Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	newbase	end	tum_allele1	tum_allele2	start	effect_idx	newbase_idx	pat_idx	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	gene_idx	context_and_effect	context65	categ_idx	trackpos	categ	gene	chr	pos	type	classification	ref_allele	patient	DistBetween_Mutations	Distance_to_LT_end	Distance_to_RT_end	Strain_Mutation_ID	Dataset_Mutation_ID	Complex_ID	Complex_Size	StrainCluster_ID	Dataset_Cluster_ID	Distance_Between_Clusters	Cluster_Size_Mutations	Cluster_Size_Complexes	Cluster_Length	Cluster_Coordination	Content_of_non_coordinated_cluster	Cluster_Pvalue
MMEL1	79258	broad.mit.edu;hgsc.bcm.edu	37	1	2530196	2530196	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	2530196	G	C	2530196	3	2	1	1	0	0	0	0	1	0	0	0	9653	962	34	4	1316	4	MMEL1	1	2530196	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08		2530196	246720425	1	1											
C1orf158	93190	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12820749	12820749	+	Silent	SNP	G	G	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	12820749	G	A	12820749	2	1	1	1	0	0	0	0	0	0	0	1	2009	962	34	2		2	C1orf158	1	12820749	Silent	SNP	G	TCGA-A3-3311-01A-01D-0966-08	10290553	12820749	236429872	2	2											
PDE4B	5142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	66798124	66798124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	66798124	G	A	66798124	3	1	1	1	0	0	0	0	1	0	0	0	11647	1116	39	1	952	1	PDE4B	1	66798124	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	53977375	66798124	182452497	3	3											
FCRL4	83417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	157556209	157556209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	157556209	G	A	157556209	3	1	1	1	0	0	0	0	1	0	0	0	5804	1232	43	2	691	2	FCRL4	1	157556209	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	90758085	157556209	91694412	4	4											
KIF21B	23046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200954092	200954092	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	200954092	T	A	200954092	3	1	1	1	0	0	0	0	1	0	0	0	8296	1435	50	5	1208	5	KIF21B	1	200954092	Missense_Mutation	SNP	T	TCGA-A3-3311-01A-01D-0966-08	43397883	200954092	48296529	5	5											
CYB5R1	51706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	202932260	202932260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	202932260	C	T	202932260	3	4	1	1	0	0	0	0	1	0	0	0	4128	922	32	2	246	2	CYB5R1	1	202932260	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08	1978168	202932260	46318361	6	6											
OPTC	26254	broad.mit.edu;hgsc.bcm.edu	37	1	203465362	203465362	+	Missense_Mutation	SNP	G	G	A	rs140125203		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	203465362	G	A	203465362	3	1	1	1	0	0	0	0	1	0	0	0	10895	1059	37	1	231	1	OPTC	1	203465362	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	533102	203465362	45785259	7	7											
PROX1	5629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	214170133	214170133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	214170133	G	A	214170133	3	1	1	1	0	0	0	0	1	0	0	0	12570	1319	46	2	257	2	PROX1	1	214170133	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	10704771	214170133	35080488	8	8											
CDC42BPA	8476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	227213828	227213828	+	Silent	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	227213828	C	T	227213828	2	4	1	1	0	0	0	0	0	0	0	1	3074	465	17	2		2	CDC42BPA	1	227213828	Silent	SNP	C	TCGA-A3-3311-01A-01D-0966-08	13043695	227213828	22036793	9	9											
TTC15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	3391616	3391616	+	Silent	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	3391616	C	T	3391616	2	4	1	1	0	0	0	0	0	0	0	1	16694	564	20	2		2	TTC15	2	3391616	Silent	SNP	C	TCGA-A3-3311-01A-01D-0966-08		3391616	239807757	10	10											
DHX57	90957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	39075474	39075474	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	-	39075474	C	-	39075474	7	5	1	1	0	1	0	1	0	0	0	0	4515	710	25	0	2119	0	DHX57	2	39075474	Frame_Shift_Del	DEL	C	TCGA-A3-3311-01A-01D-0966-08	35683858	39075474	204123899	11	11											
CNNM3	26505	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	97483238	97483238	+	Silent	SNP	A	A	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	97483238	A	C	97483238	2	2	1	1	0	0	0	0	0	0	0	1	3616	318	11	5		5	CNNM3	2	97483238	Silent	SNP	A	TCGA-A3-3311-01A-01D-0966-08	58407764	97483238	145716135	12	12											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179399168	179399168	+	Silent	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	179399168	C	T	179399168	2	4	1	1	0	0	0	0	0	0	0	1	16747	854	30	2		2	TTN	2	179399168	Silent	SNP	C	TCGA-A3-3311-01A-01D-0966-08	81915930	179399168	63800205	13	13											
ACCN4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220396729	220396729	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	220396729	C	G	220396729	3	3	1	1	0	0	0	0	1	0	0	0	131	536	19	4	1125	4	ACCN4	2	220396729	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08	40997561	220396729	22802644	14	14											
SETMAR	6419	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	4355062	4355062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	4355062	A	G	4355062	3	3	1	1	0	0	0	0	1	0	0	0	14153	391	14	3	643	3	SETMAR	3	4355062	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08		4355062	193667368	15	15											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu	37	3	47059132	47059132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	47059132	C	T	47059132	3	4	1	1	0	0	0	0	1	0	0	0	14144	768	27	1	173	1	SETD2	3	47059132	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08	42704070	47059132	150963298	16	16											
NICN1	84276	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49466658	49466658	+	Silent	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	49466658	C	T	49466658	2	4	1	1	0	0	0	0	0	0	0	1	10420	593	21	2		2	NICN1	3	49466658	Silent	SNP	C	TCGA-A3-3311-01A-01D-0966-08	2407526	49466658	148555772	17	17											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52598242	52598242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	52598242	A	C	52598242	3	2	1	1	0	0	0	0	1	0	0	0	11498	157	6	5	1233	5	PBRM1	3	52598242	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08	3131584	52598242	145424188	18	18											
MBD4	8930	hgsc.bcm.edu	37	3	129152947	129152950	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	-	129152950	TTCT	-	129152947	7	5	1	1	0	1	0	1	0	0	0	0	9353	1608	56	0	528	0	MBD4	3	129152947	Frame_Shift_Del	DEL	TTCT	TCGA-A3-3311-01A-01D-0966-08	76554705	129152947	68869483	19	19											
ECT2	1894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	172480526	172480526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	172480526	T	C	172480526	3	2	1	1	0	0	0	0	1	0	0	0	4903	1638	57	3	872	3	ECT2	3	172480526	Missense_Mutation	SNP	T	TCGA-A3-3311-01A-01D-0966-08	43327579	172480526	25541904	20	20											
CCKAR	886	hgsc.bcm.edu;ucsc.edu	37	4	26483745	26483745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	26483745	C	A	26483745	3	1	1	1	0	0	0	0	1	0	0	0	2882	594	21	4	488	4	CCKAR	4	26483745	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08		26483745	164670531	21	21											
THAP9	79725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83839153	83839153	+	Silent	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	83839153	C	T	83839153	2	4	1	1	0	0	0	0	0	0	0	1	15863	813	29	2		2	THAP9	4	83839153	Silent	SNP	C	TCGA-A3-3311-01A-01D-0966-08	57355408	83839153	107315123	22	22											
FGF2	2247	hgsc.bcm.edu;ucsc.edu	37	4	123813456	123813456	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	-	123813456	G	-	123813456	7	5	1	1	0	1	0	1	0	0	0	0	5855	1377	48	0	782	0	FGF2	4	123813456	Frame_Shift_Del	DEL	G	TCGA-A3-3311-01A-01D-0966-08	39974303	123813456	67340820	23	23											
C4orf51	646603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	146650343	146650343	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	146650343	G	C	146650343	3	2	1	1	0	0	0	0	1	0	0	0	2279	1261	44	4	403	4	C4orf51	4	146650343	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	22836887	146650343	44503933	24	24											
GOLPH3	64083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32126354	32126354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	32126354	C	A	32126354	3	1	1	1	0	0	0	0	1	0	0	0	6575	680	24	4	39	4	GOLPH3	5	32126354	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08		32126354	148788906	25	25											
LIFR	3977	broad.mit.edu;hgsc.bcm.edu	37	5	38484964	38484964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	38484964	C	A	38484964	3	1	1	1	0	0	0	0	1	0	0	0	8787	855	30	4	801	4	LIFR	5	38484964	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08	6358610	38484964	142430296	26	26											
WDR36	134430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	110428228	110428228	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	110428228	A	T	110428228	3	4	1	1	0	0	0	0	1	0	0	0	17302	43	2	5	244	5	WDR36	5	110428228	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08	71943264	110428228	70487032	27	27											
CPNE5	57699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36730739	36730739	+	Silent	SNP	A	A	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	36730739	A	G	36730739	2	3	1	1	0	0	0	0	0	0	0	1	3817	40	2	3		3	CPNE5	6	36730739	Silent	SNP	A	TCGA-A3-3311-01A-01D-0966-08		36730739	134384328	28	28											
MAP3K7	6885	broad.mit.edu;hgsc.bcm.edu	37	6	91228282	91228282	+	Splice_Site	SNP	C	C	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	91228282	C	A	91228282	5	1	1	1	0	0	0	0	0	0	1	0	9262	811	28	4	304	4	MAP3K7	6	91228282	Splice_Site	SNP	C	TCGA-A3-3311-01A-01D-0966-08	54497543	91228282	79886785	29	29											
GPR126	57211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	142737063	142737063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	142737063	G	T	142737063	3	4	1	1	0	0	0	0	1	0	0	0	6647	1319	46	4	2878	4	GPR126	6	142737063	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	51508781	142737063	28378004	30	30											
INTS1	26173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	1539240	1539240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	1539240	C	T	1539240	3	4	1	1	0	0	0	0	1	0	0	0	7782	652	23	1	6031	1	INTS1	7	1539240	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08		1539240	157599423	31	31											
KDELR2	11014	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	6502730	6502730	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	6502730	C	G	6502730	3	3	1	1	0	0	0	0	1	0	0	0	8127	652	23	4	136	4	KDELR2	7	6502730	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08	4963490	6502730	152635933	32	32											
CDK13	8621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	40085608	40085608	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	40085608	A	T	40085608	3	4	1	1	0	0	0	0	1	0	0	0	3131	449	16	5	2549	5	CDK13	7	40085608	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08	33582878	40085608	119053055	33	33											
ZMIZ2	83637	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	44805139	44805139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	44805139	C	A	44805139	3	1	1	1	0	0	0	0	1	0	0	0	17709	739	26	4	2261	4	ZMIZ2	7	44805139	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08	4719531	44805139	114333524	34	34											
PTPRZ1	5803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	121653811	121653811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	121653811	G	A	121653811	3	1	1	1	0	0	0	0	1	0	0	0	12827	1319	46	2	4757	2	PTPRZ1	7	121653811	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	76848672	121653811	37484852	35	35											
TRPV5	56302	broad.mit.edu;hgsc.bcm.edu	37	7	142626641	142626641	+	Silent	SNP	G	G	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	142626641	G	A	142626641	2	1	1	1	0	0	0	0	0	0	0	1	16611	1048	37	1		1	TRPV5	7	142626641	Silent	SNP	G	TCGA-A3-3311-01A-01D-0966-08	20972830	142626641	16512022	36	36											
CSMD1	64478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	4495044	4495044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	4495044	C	A	4495044	3	1	1	1	0	0	0	0	1	0	0	0	3946	739	26	4	10661	4	CSMD1	8	4495044	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08		4495044	141868978	37	37											
ELP3	55140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	27970578	27970578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	27970578	G	A	27970578	3	1	1	1	0	0	0	0	1	0	0	0	5083	1377	48	2	531	2	ELP3	8	27970578	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	23475534	27970578	118393444	38	38											
PLEKHA2	59339	hgsc.bcm.edu	37	8	38827186	38827186	+	Frame_Shift_Del	DEL	C	C	-	rs139752038	bycluster;by1000genomes	TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	-	38827186	C	-	38827186	7	5	1	1	0	1	0	1	0	0	0	0	12063	739	26	0	1205	0	PLEKHA2	8	38827186	Frame_Shift_Del	DEL	C	TCGA-A3-3311-01A-01D-0966-08	10856608	38827186	107536836	39	39											
PXDNL	137902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	52359592	52359592	+	Silent	SNP	C	C	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	52359592	C	A	52359592	2	1	1	1	0	0	0	0	0	0	0	1	12861	465	17	4		4	PXDNL	8	52359592	Silent	SNP	C	TCGA-A3-3311-01A-01D-0966-08	13532406	52359592	94004430	40	40											
SULF1	23213	hgsc.bcm.edu;ucsc.edu	37	8	70515859	70515861	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	-	70515861	AAT	-	70515859	7	5	1	1	0	1	0	1	0	0	0	0	15382	11	1	0	1245	0	SULF1	8	70515859	In_Frame_Del	DEL	AAT	TCGA-A3-3311-01A-01D-0966-08	18156267	70515859	75848163	41	41											
ZCCHC6	79670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	88938317	88938317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	88938317	G	A	88938317	3	1	1	1	0	0	0	0	1	0	0	0	17604	1294	45	2	2199	2	ZCCHC6	9	88938317	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08		88938317	52275114	42	42											
CERCAM	51148	broad.mit.edu	37	9	131196482	131196482	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	131196482	T	T	131196482	3	4	1	1	0	0	0	0	1	0	0	0	3268	991	35	4	1343	4	CERCAM	9	131196482	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	42258165	131196482	10016949	43	43	1	2									
CERCAM	51148	broad.mit.edu	37	9	131196483	131196483	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	131196483	T	T	131196483	3	4	1	1	0	0	0	0	1	0	0	0	3268	1203	42	4	1344	4	CERCAM	9	131196483	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08	1	131196483	10016948	44	44	1	2									
CARD9	64170	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139266450	139266450	+	Silent	SNP	G	G	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	139266450	G	C	139266450	2	2	1	1	0	0	0	0	0	0	0	1	2654	987	35	4		4	CARD9	9	139266450	Silent	SNP	G	TCGA-A3-3311-01A-01D-0966-08	8069967	139266450	1946981	45	45											
CAMK1D	57118	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	12833177	12833177	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	12833177	A	C	12833177	3	2	1	1	0	0	0	0	1	0	0	0	2599	247	9	5	608	5	CAMK1D	10	12833177	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08		12833177	122701570	46	46											
C10orf68	79741	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	33134530	33134530	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	33134530	A	C	33134530	3	2	1	1	0	0	0	0	1	0	0	0	1615	159	6	5	1275	5	C10orf68	10	33134530	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08	20301353	33134530	102400217	47	47											
ITGB1	3688	hgsc.bcm.edu	37	10	33199253	33199258	+	In_Frame_Del	DEL	CAGGAT	CAGGAT	-	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	CAGGAT	CAGGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	-	33199258	CAGGAT	-	33199253	7	5	1	1	0	1	0	1	0	0	0	0	7897	478	17	0	584	0	ITGB1	10	33199253	In_Frame_Del	DEL	CAGGAT	TCGA-A3-3311-01A-01D-0966-08	64723	33199253	102335494	48	48											
AMICA1	120425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118068750	118068750	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	118068750	T	G	118068750	3	3	1	1	0	0	0	0	1	0	0	0	574	1841	64	5	228	5	AMICA1	11	118068750	Missense_Mutation	SNP	T	TCGA-A3-3311-01A-01D-0966-08		118068750	16937766	49	49											
KLRC1	3821	broad.mit.edu;hgsc.bcm.edu	37	12	10599220	10599220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	10599220	A	C	10599220	3	2	1	1	0	0	0	0	1	0	0	0	8422	420	15	5	73	5	KLRC1	12	10599220	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08		10599220	123252675	50	50											
XRCC6BP1	91419	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	58340855	58340855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	58340855	C	A	58340855	3	1	1	1	0	0	0	0	1	0	0	0	17470	913	32	4	321	4	XRCC6BP1	12	58340855	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08	47741635	58340855	75511040	51	51											
EEA1	8411	hgsc.bcm.edu;ucsc.edu	37	12	93205170	93205170	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	-	93205170	G	-	93205170	7	5	1	1	0	1	0	1	0	0	0	0	4923	1319	46	0	2203	0	EEA1	12	93205170	Frame_Shift_Del	DEL	G	TCGA-A3-3311-01A-01D-0966-08	34864315	93205170	40646725	52	52											
TPTE2	93492	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	20039633	20039633	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	20039633	C	G	20039633	3	3	1	1	0	0	0	0	1	0	0	0	16443	913	32	4	1036	4	TPTE2	13	20039633	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08		20039633	95130245	53	53											
BRCA2	675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32915021	32915021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	32915021	A	G	32915021	3	3	1	1	0	0	0	0	1	0	0	0	1501	217	8	3	6567	3	BRCA2	13	32915021	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08	12875388	32915021	82254857	54	54											
CTDSPL2	51496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	44751276	44751276	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	44751276	A	T	44751276	4	4	1	1	0	0	0	0	0	1	0	0	4008	180	7	5	66	5	CTDSPL2	15	44751276	Nonsense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08		44751276	57780116	55	55											
SPG11	80208	hgsc.bcm.edu	37	15	44858098	44858099	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	44858099	-	G	44858098	7	5	1	1	0	1	1	0	0	0	0	0	15053	768	27	0	390	0	SPG11	15	44858098	Frame_Shift_Ins	INS	-	TCGA-A3-3311-01A-01D-0966-08	106822	44858098	57673294	56	56											
FANCI	55215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89837084	89837084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	89837084	T	C	89837084	3	2	1	1	0	0	0	0	1	0	0	0	5676	1493	52	3	2398	3	FANCI	15	89837084	Missense_Mutation	SNP	T	TCGA-A3-3311-01A-01D-0966-08	44978986	89837084	12694308	57	57											
FBXL16	146330	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	745593	745593	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	C	745593	G	C	745593	3	2	1	1	0	0	0	0	1	0	0	0	5719	1000	35	4	491	4	FBXL16	16	745593	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08		745593	89609160	58	58											
WSCD1	23302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	6021491	6021491	+	Missense_Mutation	SNP	G	G	A	rs112285134	by1000genomes	TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	A	6021491	G	A	6021491	3	1	1	1	0	0	0	0	1	0	0	0	17418	1087	38	1	1384	1	WSCD1	17	6021491	Missense_Mutation	SNP	G	TCGA-A3-3311-01A-01D-0966-08		6021491	75173719	59	59											
ERAL1	26284	hgsc.bcm.edu	37	17	27182058	27182059	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	27182059	-	G	27182058	7	5	1	1	0	1	1	0	0	0	0	0	5204	1567	55	0	8	0	ERAL1	17	27182058	Frame_Shift_Ins	INS	-	TCGA-A3-3311-01A-01D-0966-08	21160567	27182058	54013152	60	60											
AZI1	22994	hgsc.bcm.edu;ucsc.edu	37	17	79168674	79168677	+	Frame_Shift_Del	DEL	GACA	GACA	-	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	GACA	GACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	-	79168677	GACA	-	79168674	7	5	1	1	0	1	0	1	0	0	0	0	1240	1161	41	0	1167	0	AZI1	17	79168674	Frame_Shift_Del	DEL	GACA	TCGA-A3-3311-01A-01D-0966-08	51986616	79168674	2026536	61	61											
ATP5A1	498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	43666148	43666148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	43666148	C	T	43666148	3	4	1	1	0	0	0	0	1	0	0	0	1147	884	31	1	313	1	ATP5A1	18	43666148	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08		43666148	34411100	62	62											
PGLYRP2	114770	broad.mit.edu;hgsc.bcm.edu	37	19	15587107	15587107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	15587107	A	T	15587107	3	4	1	1	0	0	0	0	1	0	0	0	11801	188	7	5	1372	5	PGLYRP2	19	15587107	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08		15587107	43541876	63	63											
ZNF493	284443	broad.mit.edu;hgsc.bcm.edu	37	19	21607620	21607620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	21607620	A	G	21607620	3	3	1	1	0	0	0	0	1	0	0	0	17956	14	1	3	2236	3	ZNF493	19	21607620	Missense_Mutation	SNP	A	TCGA-A3-3311-01A-01D-0966-08	6020513	21607620	37521363	64	64											
RPS21	6227	hgsc.bcm.edu	37	20	60962917	60962918	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	G	60962918	-	G	60962917	7	5	1	1	0	1	1	0	0	0	0	0	13646	179	7	0	143	0	RPS21	20	60962917	Frame_Shift_Ins	INS	-	TCGA-A3-3311-01A-01D-0966-08		60962917	2062603	65	65											
TLR7	51284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	12906241	12906241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	12906241	C	T	12906241	3	4	1	1	0	0	0	0	1	0	0	0	15968	594	21	2	2620	2	TLR7	23	12906241	Missense_Mutation	SNP	C	TCGA-A3-3311-01A-01D-0966-08		12906241	142364319	66	66											
IKBKG	8517	broad.mit.edu	37	X	153770607	153770607	+	Silent	SNP	G	T	T	novel		TCGA-A3-3311-01A-01D-0966-08	TCGA-A3-3311-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c095b70-9a64-48b0-8a1c-45dd00a70019	9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf	T	153770607	T	T	153770607	2	4	1	1	0	0	0	0	0	0	0	1	7620	1219	43	4		4	IKBKG	23	153770607	Silent	SNP	G	TCGA-A3-3311-01A-01D-0966-08	140864366	153770607	1499953	67	67											
PRDM16	63976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	3102700	3102700	+	Missense_Mutation	SNP	G	G	A	rs183153140	by1000genomes	TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	A	3102700	G	A	3102700	3	1	2	1	0	0	0	0	1	0	0	0	12467	1145	40	1	55	1	PRDM16	1	3102700	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08		3102700	246147921	1	68											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu	37	1	39934334	39934334	+	Silent	SNP	C	C	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	39934334	C	T	39934334	2	4	2	1	0	0	0	0	0	0	0	1	9151	639	23	1		1	MACF1	1	39934334	Silent	SNP	C	TCGA-A3-3316-01A-01D-0966-08	36831634	39934334	209316287	2	69											
C1orf114	57821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169391358	169391358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	G	169391358	A	G	169391358	3	3	2	1	0	0	0	0	1	0	0	0	1989	246	9	3	1231	3	C1orf114	1	169391358	Missense_Mutation	SNP	A	TCGA-A3-3316-01A-01D-0966-08	129457024	169391358	79859263	3	70											
CRB1	23418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197390735	197390735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	A	197390735	G	A	197390735	3	1	2	1	0	0	0	0	1	0	0	0	3850	1087	38	1	1799	1	CRB1	1	197390735	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08	27999377	197390735	51859886	4	71											
ZC3H11A	9877	broad.mit.edu;hgsc.bcm.edu	37	1	203816426	203816426	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	A	203816426	C	A	203816426	4	1	2	1	0	0	0	0	0	1	0	0	17572	838	29	4	1199	4	ZC3H11A	1	203816426	Nonsense_Mutation	SNP	C	TCGA-A3-3316-01A-01D-0966-08	6425691	203816426	45434195	5	72											
EPHX1	2052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	226032237	226032237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	226032237	T	C	226032237	3	2	2	1	0	0	0	0	1	0	0	0	5181	1551	54	3	1105	3	EPHX1	1	226032237	Missense_Mutation	SNP	T	TCGA-A3-3316-01A-01D-0966-08	22215811	226032237	23218384	6	73											
EFCAB2	84288	broad.mit.edu;hgsc.bcm.edu	37	1	245222709	245222709	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	245222709	G	C	245222709	3	2	2	1	0	0	0	0	1	0	0	0	4936	1252	44	4	142	4	EFCAB2	1	245222709	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08	19190472	245222709	4027912	7	74											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52588839	52588839	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	-	52588839	G	-	52588839	7	5	2	1	0	1	0	1	0	0	0	0	11498	1000	35	0	575	0	PBRM1	3	52588839	Frame_Shift_Del	DEL	G	TCGA-A3-3316-01A-01D-0966-08		52588839	145433591	8	75											
KIAA2018	205717	broad.mit.edu;hgsc.bcm.edu	37	3	113379013	113379013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	113379013	T	C	113379013	3	2	2	1	0	0	0	0	1	0	0	0	8275	1406	49	3	5225	3	KIAA2018	3	113379013	Missense_Mutation	SNP	T	TCGA-A3-3316-01A-01D-0966-08	60790174	113379013	84643417	9	76											
ATP13A4	84239	broad.mit.edu;hgsc.bcm.edu	37	3	193177001	193177001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	G	193177001	A	G	193177001	3	3	2	1	0	0	0	0	1	0	0	0	1126	72	3	3	2115	3	ATP13A4	3	193177001	Missense_Mutation	SNP	A	TCGA-A3-3316-01A-01D-0966-08	79797988	193177001	4845429	10	77											
ZDHHC19	131540	broad.mit.edu	37	3	195934301	195934301	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	-	195934301	-	-	195934301	7	5	2	1	0	1	0	1	0	0	0	0	17621	536	19	0	286	0	ZDHHC19	3	195934301	Frame_Shift_Del	DEL	C	TCGA-A3-3316-01A-01D-0966-08	2757300	195934301	2088129	11	78											
RASGEF1B	153020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	82355851	82355851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	G	82355851	A	G	82355851	3	3	2	1	0	0	0	0	1	0	0	0	13083	101	4	3	295	3	RASGEF1B	4	82355851	Missense_Mutation	SNP	A	TCGA-A3-3316-01A-01D-0966-08		82355851	108798425	12	79											
FGA	2243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	155507521	155507521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	155507521	G	T	155507521	3	4	2	1	0	0	0	0	1	0	0	0	5837	1261	44	4	1592	4	FGA	4	155507521	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08	73151670	155507521	35646755	13	80											
GUCY1A3	2982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	156632326	156632326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	156632326	G	C	156632326	3	2	2	1	0	0	0	0	1	0	0	0	6901	1116	39	4	1023	4	GUCY1A3	4	156632326	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08	1124805	156632326	34521950	14	81											
NNT	23530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	43677827	43677827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	A	43677827	G	A	43677827	3	1	2	1	0	0	0	0	1	0	0	0	10517	1217	42	2	2865	2	NNT	5	43677827	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08		43677827	137237433	15	82											
ABCB5	340273	hgsc.bcm.edu;ucsc.edu	37	7	20785034	20785034	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	-	20785034	C	-	20785034	7	5	2	1	0	1	0	1	0	0	0	0	44	845	30	0	3541	0	ABCB5	7	20785034	Frame_Shift_Del	DEL	C	TCGA-A3-3316-01A-01D-0966-08		20785034	138353629	16	83											
DNAH11	8701	broad.mit.edu	37	7	21908580	21908580	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	21908580	C	C	21908580	3	2	2	1	0	0	0	0	1	0	0	0	4601	1783	62	3	12250	3	DNAH11	7	21908580	Missense_Mutation	SNP	T	TCGA-A3-3316-01A-01D-0966-08	1123546	21908580	137230083	17	84											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	48556346	48556346	+	Silent	SNP	C	C	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	48556346	C	T	48556346	2	4	2	1	0	0	0	0	0	0	0	1	31	680	24	2		2	ABCA13	7	48556346	Silent	SNP	C	TCGA-A3-3316-01A-01D-0966-08	26647766	48556346	110582317	18	85											
CLDN4	1364	broad.mit.edu;ucsc.edu	37	7	73246086	73246086	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	G	73246086	G	G	73246086	3	3	2	1	0	0	0	0	1	0	0	0	3489	1673	58	5	557	5	CLDN4	7	73246086	Missense_Mutation	SNP	T	TCGA-A3-3316-01A-01D-0966-08	24689740	73246086	85892577	19	86											
HSPA5	3309	broad.mit.edu;hgsc.bcm.edu	37	9	127998975	127998975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	127998975	T	C	127998975	3	2	2	1	0	0	0	0	1	0	0	0	7421	1792	62	3	107	3	HSPA5	9	127998975	Missense_Mutation	SNP	T	TCGA-A3-3316-01A-01D-0966-08		127998975	13214456	20	87											
ARID5B	84159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	63851221	63851221	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	63851221	A	C	63851221	3	2	2	1	0	0	0	0	1	0	0	0	922	246	9	5	2037	5	ARID5B	10	63851221	Missense_Mutation	SNP	A	TCGA-A3-3316-01A-01D-0966-08		63851221	71683526	21	88											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	89711891	89711891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	A	89711891	G	A	89711891	3	1	2	1	0	0	0	0	1	0	0	0	12748	1029	36	2	531	2	PTEN	10	89711891	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08	25860670	89711891	45822856	22	89											
FANCF	2188	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	22646829	22646829	+	Silent	SNP	C	C	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	22646829	C	T	22646829	2	4	2	1	0	0	0	0	0	0	0	1	5674	680	24	2		2	FANCF	11	22646829	Silent	SNP	C	TCGA-A3-3316-01A-01D-0966-08		22646829	112359687	23	90											
GLYATL1	92292	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	58711084	58711084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	58711084	G	C	58711084	3	2	2	1	0	0	0	0	1	0	0	0	6487	1252	44	4	99	4	GLYATL1	11	58711084	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08	36064255	58711084	76295432	24	91											
SPTBN2	6712	broad.mit.edu	37	11	66472256	66472256	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	A	66472256	A	A	66472256	4	1	2	1	0	0	0	0	0	1	0	0	15132	864	30	4	4777	4	SPTBN2	11	66472256	Nonsense_Mutation	SNP	C	TCGA-A3-3316-01A-01D-0966-08	7761172	66472256	68534260	25	92											
CUL5	8065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	107974931	107974931	+	Silent	SNP	A	A	G	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	G	107974931	A	G	107974931	2	3	2	1	0	0	0	0	0	0	0	1	4061	11	1	3		3	CUL5	11	107974931	Silent	SNP	A	TCGA-A3-3316-01A-01D-0966-08	41502675	107974931	27031585	26	93											
RIMBP2	23504	broad.mit.edu;ucsc.edu	37	12	130926846	130926846	+	Missense_Mutation	SNP	C	T	T	rs141970284		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	130926846	T	T	130926846	3	4	2	1	0	0	0	0	1	0	0	0	13376	536	19	1	2206	1	RIMBP2	12	130926846	Missense_Mutation	SNP	C	TCGA-A3-3316-01A-01D-0966-08		130926846	2925049	27	94											
MTMR10	54893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	31282988	31282988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	31282988	A	C	31282988	3	2	2	1	0	0	0	0	1	0	0	0	9946	72	3	5	2280	5	MTMR10	15	31282988	Missense_Mutation	SNP	A	TCGA-A3-3316-01A-01D-0966-08		31282988	71248404	28	95											
SPTBN5	51332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42173407	42173407	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	G	42173407	C	G	42173407	3	3	2	1	0	0	0	0	1	0	0	0	15134	855	30	4	8765	4	SPTBN5	15	42173407	Missense_Mutation	SNP	C	TCGA-A3-3316-01A-01D-0966-08	10890419	42173407	60357985	29	96											
GRIN2A	2903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	9857569	9857569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	9857569	G	T	9857569	3	4	2	1	0	0	0	0	1	0	0	0	6786	1299	45	4	566	4	GRIN2A	16	9857569	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08		9857569	80497184	30	97											
MLX	6945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40720575	40720575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	40720575	C	T	40720575	3	4	2	1	0	0	0	0	1	0	0	0	9642	478	17	2	339	2	MLX	17	40720575	Missense_Mutation	SNP	C	TCGA-A3-3316-01A-01D-0966-08		40720575	40474635	31	98											
CD300E	342510	broad.mit.edu;hgsc.bcm.edu	37	17	72610086	72610086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	72610086	C	T	72610086	3	4	2	1	0	0	0	0	1	0	0	0	3000	864	30	2	150	2	CD300E	17	72610086	Missense_Mutation	SNP	C	TCGA-A3-3316-01A-01D-0966-08	31889511	72610086	8585124	32	99											
SMCHD1	23347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	2722637	2722637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	G	2722637	A	G	2722637	3	3	2	1	0	0	0	0	1	0	0	0	14801	333	12	3	2657	3	SMCHD1	18	2722637	Missense_Mutation	SNP	A	TCGA-A3-3316-01A-01D-0966-08		2722637	75354611	33	100											
LRRC30	339291	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	7232028	7232028	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	-	7232028	A	-	7232028	7	5	2	1	0	1	0	1	0	0	0	0	8992	131	5	0	894	0	LRRC30	18	7232028	Frame_Shift_Del	DEL	A	TCGA-A3-3316-01A-01D-0966-08	4509391	7232028	70845220	34	101											
DSG1	1828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	28934518	28934518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	28934518	C	T	28934518	4	4	2	1	0	0	0	0	0	1	0	0	4778	827	29	2	2417	2	DSG1	18	28934518	Nonsense_Mutation	SNP	C	TCGA-A3-3316-01A-01D-0966-08	21702490	28934518	49142730	35	102											
DSG2	1829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	29116293	29116293	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	29116293	G	C	29116293	3	2	2	1	0	0	0	0	1	0	0	0	4779	943	33	4	1594	4	DSG2	18	29116293	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08	181775	29116293	48960955	36	103											
CYP4F12	66002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15794430	15794430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	A	15794430	G	A	15794430	3	1	2	1	0	0	0	0	1	0	0	0	4189	1203	42	2	797	2	CYP4F12	19	15794430	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08		15794430	43334553	37	104											
IGFL4	444882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46543533	46543533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	46543533	C	T	46543533	3	4	2	1	0	0	0	0	1	0	0	0	7596	710	25	2	170	2	IGFL4	19	46543533	Missense_Mutation	SNP	C	TCGA-A3-3316-01A-01D-0966-08	30749103	46543533	12585450	38	105											
PEG3	5178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57335855	57335855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	57335855	A	T	57335855	3	4	2	1	0	0	0	0	1	0	0	0	11727	101	4	5		5	PEG3	19	57335855	Missense_Mutation	SNP	A	TCGA-A3-3316-01A-01D-0966-08	10792322	57335855	1793128	39	106											
SELO	83642	hgsc.bcm.edu	37	22	50655685	50655686	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	C	50655686	-	C	50655685	7	5	2	1	0	1	1	0	0	0	0	0	14031	1203	42	0	1931	0	SELO	22	50655685	Frame_Shift_Ins	INS	-	TCGA-A3-3316-01A-01D-0966-08		50655685	648881	40	107											
ZNF280C	55609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129343630	129343630	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	T	129343630	A	T	129343630	3	4	2	1	0	0	0	0	1	0	0	0	17828	304	11	5	190	5	ZNF280C	23	129343630	Missense_Mutation	SNP	A	TCGA-A3-3316-01A-01D-0966-08		129343630	25926930	41	108	2	2									
ZNF280C	55609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129343631	129343631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3316-01A-01D-0966-08	TCGA-A3-3316-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1241cff-4071-482e-be5b-adb9c46a480a	57bb209a-9a43-48f4-8183-8350bee49508	A	129343631	G	A	129343631	3	1	2	1	0	0	0	0	1	0	0	0	17828	942	33	2	191	2	ZNF280C	23	129343631	Missense_Mutation	SNP	G	TCGA-A3-3316-01A-01D-0966-08	1	129343631	25926929	42	109	2	2									
DMAP1	55929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44684379	44684379	+	Silent	SNP	A	A	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	44684379	A	T	44684379	2	4	3	1	0	0	0	0	0	0	0	1	4578	262	10	5		5	DMAP1	1	44684379	Silent	SNP	A	TCGA-A3-3317-01A-01D-0966-08		44684379	204566242	1	110											
DOCK7	85440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	63084419	63084419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	63084419	T	C	63084419	3	2	3	1	0	0	0	0	1	0	0	0	4694	1551	54	3	4833	3	DOCK7	1	63084419	Missense_Mutation	SNP	T	TCGA-A3-3317-01A-01D-0966-08	18400040	63084419	186166202	2	111											
LMO4	8543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	87805242	87805242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	87805242	G	C	87805242	3	2	3	1	0	0	0	0	1	0	0	0	8861	1319	46	4	266	4	LMO4	1	87805242	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	24720823	87805242	161445379	3	112											
HIST2H2BE	8349	hgsc.bcm.edu	37	1	149857934	149857936	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	-	149857936	TTG	-	149857934	7	5	3	1	0	1	0	1	0	0	0	0	7186	1609	56	0	127	0	HIST2H2BE	1	149857934	In_Frame_Del	DEL	TTG	TCGA-A3-3317-01A-01D-0966-08	62052692	149857934	99392687	4	113											
SELENBP1	8991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151337664	151337664	+	Splice_Site	SNP	C	C	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	151337664	C	G	151337664	5	3	3	1	0	0	0	0	0	0	1	0	14027	521	18	4	292	4	SELENBP1	1	151337664	Splice_Site	SNP	C	TCGA-A3-3317-01A-01D-0966-08	1479730	151337664	97912957	5	114											
C1orf114	57821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169391155	169391155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	169391155	A	C	169391155	3	2	3	1	0	0	0	0	1	0	0	0	1989	14	1	5	1028	5	C1orf114	1	169391155	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08	18053491	169391155	79859466	6	115											
CHIT1	1118	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203186906	203186906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	203186906	C	T	203186906	3	4	3	1	0	0	0	0	1	0	0	0	3348	623	22	2	291	2	CHIT1	1	203186906	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	33795751	203186906	46063715	7	116											
PREPL	9581	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44554022	44554022	+	Silent	SNP	T	T	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	44554022	T	A	44554022	2	1	3	1	0	0	0	0	0	0	0	1	12485	1741	61	5		5	PREPL	2	44554022	Silent	SNP	T	TCGA-A3-3317-01A-01D-0966-08		44554022	198645351	8	117											
SMEK2	57223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	55813757	55813757	+	Silent	SNP	T	T	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	55813757	T	A	55813757	2	1	3	1	0	0	0	0	0	0	0	1	14807	1741	61	5		5	SMEK2	2	55813757	Silent	SNP	T	TCGA-A3-3317-01A-01D-0966-08	11259735	55813757	187385616	9	118											
ANKRD36	375248	broad.mit.edu;hgsc.bcm.edu	37	2	97784175	97784175	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	97784175	A	T	97784175	3	4	3	1	0	0	0	0	1	0	0	0	665	159	6	5	417	5	ANKRD36	2	97784175	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08	41970418	97784175	145415198	10	119											
ST6GAL2	84620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	107460218	107460218	+	Silent	SNP	C	C	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	107460218	C	G	107460218	2	3	3	1	0	0	0	0	0	0	0	1	15234	610	22	4		4	ST6GAL2	2	107460218	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08	9676043	107460218	135739155	11	120											
RIF1	55183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152320194	152320194	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	152320194	A	C	152320194	3	2	3	1	0	0	0	0	1	0	0	0	13372	101	4	5	4274	5	RIF1	2	152320194	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08	44859976	152320194	90879179	12	121											
CHRNA1	1134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	175612868	175612868	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	175612868	A	T	175612868	4	4	3	1	0	0	0	0	0	1	0	0	3383	372	13	5	19	5	CHRNA1	2	175612868	Nonsense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08	23292674	175612868	67586505	13	122											
PECR	55825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	216908708	216908708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	216908708	G	A	216908708	3	1	3	1	0	0	0	0	1	0	0	0	11724	1174	41	2	174	2	PECR	2	216908708	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	41295840	216908708	26290665	14	123											
ZFAND2B	130617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220072989	220072989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	220072989	T	C	220072989	3	2	3	1	0	0	0	0	1	0	0	0	17640	1435	50	3	464	3	ZFAND2B	2	220072989	Missense_Mutation	SNP	T	TCGA-A3-3317-01A-01D-0966-08	3164281	220072989	23126384	15	124											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52438515	52438515	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	52438515	C	A	52438515	4	1	3	1	0	0	0	0	0	1	0	0	1311	835	29	4	1009	4	BAP1	3	52438515	Nonsense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08		52438515	145583915	16	125											
SAMD7	344658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	169644942	169644942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	169644942	C	A	169644942	3	1	3	1	0	0	0	0	1	0	0	0	13837	623	22	4	906	4	SAMD7	3	169644942	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	117206427	169644942	28377488	17	126											
DOK7	285489	hgsc.bcm.edu;ucsc.edu	37	4	3487325	3487325	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	-	3487325	T	-	3487325	7	5	3	1	0	1	0	1	0	0	0	0	4704	1580	55	0	610	0	DOK7	4	3487325	Frame_Shift_Del	DEL	T	TCGA-A3-3317-01A-01D-0966-08		3487325	187666951	18	127											
ENPEP	2028	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	111463966	111463966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	111463966	C	T	111463966	3	4	3	1	0	0	0	0	1	0	0	0	5130	826	29	2	1913	2	ENPEP	4	111463966	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	107976641	111463966	79690310	19	128											
SPCS3	60559	broad.mit.edu	37	4	177248330	177248330	+	Silent	SNP	C	T	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	177248330	T	T	177248330	2	4	3	1	0	0	0	0	0	0	0	1	15037	842	30	2		2	SPCS3	4	177248330	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08	65784364	177248330	13905946	20	129											
TTC33	23548	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	40716581	40716581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	40716581	A	C	40716581	3	2	3	1	0	0	0	0	1	0	0	0	16714	391	14	5	337	5	TTC33	5	40716581	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08		40716581	140198679	21	130											
ITGA1	3672	broad.mit.edu	37	5	52221113	52221113	+	Silent	SNP	C	G	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	52221113	G	G	52221113	2	3	3	1	0	0	0	0	0	0	0	1	7879	668	24	4		4	ITGA1	5	52221113	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08	11504532	52221113	128694147	22	131											
ARSB	411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	78076227	78076227	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	78076227	C	T	78076227	4	4	3	1	0	0	0	0	0	1	0	0	988	595	21	2	10	2	ARSB	5	78076227	Nonsense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	25855114	78076227	102839033	23	132											
ERAP1	51752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	96139528	96139528	+	Silent	SNP	G	G	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	96139528	G	A	96139528	2	1	3	1	0	0	0	0	0	0	0	1	5205	1310	46	2		2	ERAP1	5	96139528	Silent	SNP	G	TCGA-A3-3317-01A-01D-0966-08	18063301	96139528	84775732	24	133											
PDLIM4	8572	broad.mit.edu;hgsc.bcm.edu	37	5	131607572	131607572	+	Silent	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	131607572	C	T	131607572	2	4	3	1	0	0	0	0	0	0	0	1	11689	639	23	1		1	PDLIM4	5	131607572	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08	35468044	131607572	49307688	25	134											
PCDHA5	56143	broad.mit.edu;hgsc.bcm.edu	37	5	140202644	140202644	+	Silent	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	140202644	C	T	140202644	2	4	3	1	0	0	0	0	0	0	0	1	11534	535	19	1		1	PCDHA5	5	140202644	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08	8595072	140202644	40712616	26	135											
PROP1	5626	broad.mit.edu;hgsc.bcm.edu	37	5	177421243	177421243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	177421243	C	T	177421243	3	4	3	1	0	0	0	0	1	0	0	0	12567	652	23	1	482	1	PROP1	5	177421243	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	37218599	177421243	3494017	27	136											
WDR46	9277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33248690	33248690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	33248690	G	A	33248690	3	1	3	1	0	0	0	0	1	0	0	0	17311	1029	36	2	662	2	WDR46	6	33248690	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08		33248690	137866377	28	137	3	2									
WDR46	9277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33248691	33248691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	33248691	T	A	33248691	3	1	3	1	0	0	0	0	1	0	0	0	17311	1696	59	5	663	5	WDR46	6	33248691	Missense_Mutation	SNP	T	TCGA-A3-3317-01A-01D-0966-08	1	33248691	137866376	29	138	3	2									
KIFC1	3833	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33374604	33374604	+	Silent	SNP	G	G	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	33374604	G	T	33374604	2	4	3	1	0	0	0	0	0	0	0	1	8319	1335	47	4		4	KIFC1	6	33374604	Silent	SNP	G	TCGA-A3-3317-01A-01D-0966-08	125913	33374604	137740463	30	139											
LPA	4018	broad.mit.edu	37	6	161032706	161032706	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	161032706	A	A	161032706	4	1	3	1	0	0	0	0	0	1	0	0	8910	603	21	4	3727	4	LPA	6	161032706	Nonsense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	127658102	161032706	10082361	31	140											
RAC1	5879	broad.mit.edu	37	7	6442071	6442071	+	Silent	SNP	G	C	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	6442071	C	C	6442071	2	2	3	1	0	0	0	0	0	0	0	1	12987	1364	48	4		4	RAC1	7	6442071	Silent	SNP	G	TCGA-A3-3317-01A-01D-0966-08		6442071	152696592	32	141											
ZNF12	7559	broad.mit.edu;hgsc.bcm.edu	37	7	6731607	6731607	+	Silent	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	6731607	C	T	6731607	2	4	3	1	0	0	0	0	0	0	0	1	17730	912	32	2		2	ZNF12	7	6731607	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08	289536	6731607	152407056	33	142											
PODXL	5420	hgsc.bcm.edu	37	7	131241055	131241055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	131241055	A	G	131241055	3	3	3	1	0	0	0	0	1	0	0	0	12187	275	10	3	1648	3	PODXL	7	131241055	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08	124509448	131241055	27897608	34	143											
TUSC3	7991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	15531300	15531300	+	Silent	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	15531300	C	T	15531300	2	4	3	1	0	0	0	0	0	0	0	1	16790	845	30	2		2	TUSC3	8	15531300	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08		15531300	130832722	35	144											
NOTCH1	4851	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139410507	139410507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	139410507	C	T	139410507	3	4	3	1	0	0	0	0	1	0	0	0	10554	478	17	2	6172	2	NOTCH1	9	139410507	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08		139410507	1802924	36	145											
C10orf76	79591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	103750317	103750317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	103750317	T	C	103750317	3	2	3	1	0	0	0	0	1	0	0	0	1618	1435	50	3	704	3	C10orf76	10	103750317	Missense_Mutation	SNP	T	TCGA-A3-3317-01A-01D-0966-08		103750317	31784430	37	146											
VENTX	27287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	135053527	135053527	+	Missense_Mutation	SNP	C	C	A	rs150065198	byfrequency;alternate_allele	TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	135053527	C	A	135053527	3	1	3	1	0	0	0	0	1	0	0	0	17165	768	27	4	504	4	VENTX	10	135053527	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	31303210	135053527	481220	38	147											
CARS	833	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	3050597	3050597	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	3050597	G	C	3050597	3	2	3	1	0	0	0	0	1	0	0	0	2659	1174	41	4	1689	4	CARS	11	3050597	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08		3050597	131955919	39	148											
SLC6A5	9152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	20676346	20676346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	20676346	C	T	20676346	3	4	3	1	0	0	0	0	1	0	0	0	14700	623	22	2	2388	2	SLC6A5	11	20676346	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	17625749	20676346	114330170	40	149	4	2									
SLC6A5	9152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	20676347	20676347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	20676347	C	T	20676347	3	4	3	1	0	0	0	0	1	0	0	0	14700	623	22	2	2389	2	SLC6A5	11	20676347	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	1	20676347	114330169	41	150	4	2									
ACCS	84680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	44096169	44096169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	44096169	G	A	44096169	3	1	3	1	0	0	0	0	1	0	0	0	133	1175	41	2	441	2	ACCS	11	44096169	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	23419822	44096169	90910347	42	151											
GIF	2694	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	59611470	59611470	+	Silent	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	59611470	C	T	59611470	2	4	3	1	0	0	0	0	0	0	0	1	6383	639	23	1		1	GIF	11	59611470	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08	15515301	59611470	75395046	43	152											
ATG2A	23130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64673943	64673943	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	64673943	G	A	64673943	4	1	3	1	0	0	0	0	0	1	0	0	1093	1299	45	2	2854	2	ATG2A	11	64673943	Nonsense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	5062473	64673943	70332573	44	153											
ACCN2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	50453582	50453582	+	Silent	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	50453582	C	T	50453582	2	4	3	1	0	0	0	0	0	0	0	1	129	796	28	2		2	ACCN2	12	50453582	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08		50453582	83398313	45	154											
TBC1D15	64786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	72278663	72278663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	72278663	A	G	72278663	3	3	3	1	0	0	0	0	1	0	0	0	15616	72	3	3	558	3	TBC1D15	12	72278663	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08	21825081	72278663	61573232	46	155											
FARP1	10160	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	99098408	99098408	+	Silent	SNP	G	G	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	99098408	G	A	99098408	2	1	3	1	0	0	0	0	0	0	0	1	5683	962	34	2		2	FARP1	13	99098408	Silent	SNP	G	TCGA-A3-3317-01A-01D-0966-08		99098408	16071470	47	156											
PCCA	5095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	100925589	100925589	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	100925589	A	T	100925589	3	4	3	1	0	0	0	0	1	0	0	0	11511	391	14	5	1100	5	PCCA	13	100925589	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08	1827181	100925589	14244289	48	157											
IPO4	79711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24657425	24657425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	24657425	G	C	24657425	3	2	3	1	0	0	0	0	1	0	0	0	7802	1377	48	4	3078	4	IPO4	14	24657425	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08		24657425	82692115	49	158											
TINF2	26277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24710922	24710922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	24710922	G	T	24710922	3	4	3	1	0	0	0	0	1	0	0	0	15935	1328	46	4	1029	4	TINF2	14	24710922	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	53497	24710922	82638618	50	159											
AKAP6	9472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	33068660	33068660	+	Silent	SNP	T	T	A	rs144892695	alternate_allele	TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	33068660	T	A	33068660	2	1	3	1	0	0	0	0	0	0	0	1	455	1567	55	5		5	AKAP6	14	33068660	Silent	SNP	T	TCGA-A3-3317-01A-01D-0966-08	8357738	33068660	74280880	51	160											
SLC8A3	6547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	70633975	70633975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	70633975	C	T	70633975	3	4	3	1	0	0	0	0	1	0	0	0	14721	884	31	1	1757	1	SLC8A3	14	70633975	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	37565315	70633975	36715565	52	161											
AMN	81693	broad.mit.edu	37	14	103389067	103389067	+	Silent	SNP	C	T	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	103389067	T	T	103389067	2	4	3	1	0	0	0	0	0	0	0	1	580	782	27	1		1	AMN	14	103389067	Silent	SNP	C	TCGA-A3-3317-01A-01D-0966-08	32755092	103389067	3960473	53	162											
HERC2	8924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	28514431	28514431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	28514431	C	A	28514431	3	1	3	1	0	0	0	0	1	0	0	0	7065	739	26	4	13427	4	HERC2	15	28514431	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08		28514431	74016961	54	163											
EIF2AK4	440275	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40299227	40299227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	40299227	C	G	40299227	3	3	3	1	0	0	0	0	1	0	0	0	5001	710	25	4	3462	4	EIF2AK4	15	40299227	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	11784796	40299227	62232165	55	164											
LINGO1	84894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	77906716	77906716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	77906716	G	T	77906716	3	4	3	1	0	0	0	0	1	0	0	0	8821	1252	44	4	333	4	LINGO1	15	77906716	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	37607489	77906716	24624676	56	165											
DNAJA3	9093	hgsc.bcm.edu;ucsc.edu	37	16	4504893	4504893	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	-	4504893	T	-	4504893	7	5	3	1	0	1	0	1	0	0	0	0	4615	1609	56	0	1463	0	DNAJA3	16	4504893	Frame_Shift_Del	DEL	T	TCGA-A3-3317-01A-01D-0966-08		4504893	85849860	57	166											
C16orf71	146562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4794979	4794979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	4794979	C	T	4794979	3	4	3	1	0	0	0	0	1	0	0	0	1832	623	22	2	1028	2	C16orf71	16	4794979	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	290086	4794979	85559774	58	167											
DNAH3	55567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	21033334	21033334	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	21033334	T	G	21033334	3	3	3	1	0	0	0	0	1	0	0	0	4605	1696	59	5	6706	5	DNAH3	16	21033334	Missense_Mutation	SNP	T	TCGA-A3-3317-01A-01D-0966-08	16238355	21033334	69321419	59	168											
CDH8	1006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	61689382	61689382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	61689382	A	C	61689382	3	2	3	1	0	0	0	0	1	0	0	0	3118	131	5	5	509	5	CDH8	16	61689382	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08	40656048	61689382	28665371	60	169											
MTHFSD	64779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	86565766	86565766	+	Silent	SNP	G	G	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	86565766	G	T	86565766	2	4	3	1	0	0	0	0	0	0	0	1	9940	1086	38	4		4	MTHFSD	16	86565766	Silent	SNP	G	TCGA-A3-3317-01A-01D-0966-08	24876384	86565766	3788987	61	170											
KIF1C	10749	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4926964	4926964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	4926964	C	G	4926964	3	3	3	1	0	0	0	0	1	0	0	0	8292	711	25	4	2912	4	KIF1C	17	4926964	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08		4926964	76268246	62	171											
PRPSAP1	5635	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74324943	74324943	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	74324943	C	G	74324943	3	3	3	1	0	0	0	0	1	0	0	0	12591	637	22	4	537	4	PRPSAP1	17	74324943	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	69397979	74324943	6870267	63	172											
CBX8	57332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	77768913	77768913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	77768913	G	C	77768913	3	2	3	1	0	0	0	0	1	0	0	0	2726	971	34	4	457	4	CBX8	17	77768913	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	3443970	77768913	3426297	64	173											
FASN	2194	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	80041257	80041257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	80041257	G	T	80041257	3	4	3	1	0	0	0	0	1	0	0	0	5690	1020	36	4	2197	4	FASN	17	80041257	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	2272344	80041257	1153953	65	174											
DSC2	1824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	28651758	28651758	+	Silent	SNP	A	A	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	28651758	A	G	28651758	2	3	3	1	0	0	0	0	0	0	0	1	4768	224	8	3		3	DSC2	18	28651758	Silent	SNP	A	TCGA-A3-3317-01A-01D-0966-08		28651758	49425490	66	175											
MBD1	4152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	47799982	47799982	+	Silent	SNP	A	A	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	47799982	A	T	47799982	2	4	3	1	0	0	0	0	0	0	0	1	9349	175	7	5		5	MBD1	18	47799982	Silent	SNP	A	TCGA-A3-3317-01A-01D-0966-08	19148224	47799982	30277266	67	176											
KDM4B	23030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	5137677	5137677	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	5137677	A	T	5137677	3	4	3	1	0	0	0	0	1	0	0	0	8136	159	6	5	2489	5	KDM4B	19	5137677	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08		5137677	53991306	68	177											
TNPO2	30000	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12813644	12813644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	12813644	T	A	12813644	3	1	3	1	0	0	0	0	1	0	0	0	16348	1838	64	5	415	5	TNPO2	19	12813644	Missense_Mutation	SNP	T	TCGA-A3-3317-01A-01D-0966-08	7675967	12813644	46315339	69	178											
CILP2	148113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19653420	19653420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	19653420	G	A	19653420	3	1	3	1	0	0	0	0	1	0	0	0	3432	1117	39	1	847	1	CILP2	19	19653420	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	6839776	19653420	39475563	70	179											
LRFN3	79414	broad.mit.edu;hgsc.bcm.edu	37	19	36430547	36430547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	36430547	G	C	36430547	3	2	3	1	0	0	0	0	1	0	0	0	8946	1145	40	4	222	4	LRFN3	19	36430547	Missense_Mutation	SNP	G	TCGA-A3-3317-01A-01D-0966-08	16777127	36430547	22698436	71	180											
LYPD5	284348	broad.mit.edu	37	19	44303017	44303017	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	A	44303017	A	A	44303017	3	1	3	1	0	0	0	0	1	0	0	0	9120	1667	58	5	450	5	LYPD5	19	44303017	Missense_Mutation	SNP	T	TCGA-A3-3317-01A-01D-0966-08	7872470	44303017	14825966	72	181											
PPP5C	5536	hgsc.bcm.edu;ucsc.edu	37	19	46888136	46888136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	46888136	C	G	46888136	3	3	3	1	0	0	0	0	1	0	0	0	12416	680	24	4	900	4	PPP5C	19	46888136	Missense_Mutation	SNP	C	TCGA-A3-3317-01A-01D-0966-08	2585119	46888136	12240847	73	182											
PLAC4	191585	broad.mit.edu	37	21	42551343	42551343	+	Silent	SNP	G	C	C	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	C	42551343	C	C	42551343	2	2	3	1	0	0	0	0	0	0	0	1	12021	1277	45	4		4	PLAC4	21	42551343	Silent	SNP	G	TCGA-A3-3317-01A-01D-0966-08		42551343	5578552	74	183											
TRAPPC10	7109	broad.mit.edu;ucsc.edu	37	21	45522670	45522670	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	T	45522670	T	T	45522670	3	4	3	1	0	0	0	0	1	0	0	0	16469	188	7	5	3444	5	TRAPPC10	21	45522670	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08	2971327	45522670	2607225	75	184											
BMX	660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	15549469	15549469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3317-01A-01D-0966-08	TCGA-A3-3317-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd12847f-695b-4b97-9a56-a4a1ddc58ec4	02b0790a-61a7-4917-be68-533c397b2e6b	G	15549469	A	G	15549469	3	3	3	1	0	0	0	0	1	0	0	0	1473	449	16	3	996	3	BMX	23	15549469	Missense_Mutation	SNP	A	TCGA-A3-3317-01A-01D-0966-08		15549469	139721091	76	185											
HMGN2	3151	broad.mit.edu	37	1	26801118	26801118	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	26801118	A	A	26801118	3	1	4	1	0	0	0	0	1	0	0	0	7242	1232	43	2	215	2	HMGN2	1	26801118	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08		26801118	222449503	1	186											
SGIP1	84251	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67101650	67101650	+	Silent	SNP	C	C	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	67101650	C	T	67101650	2	4	4	1	0	0	0	0	0	0	0	1	14219	668	24	2		2	SGIP1	1	67101650	Silent	SNP	C	TCGA-A3-3322-01A-01D-0966-08	40300532	67101650	182148971	2	187											
IL12RB2	3595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67861487	67861487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	67861487	G	C	67861487	3	2	4	1	0	0	0	0	1	0	0	0	7634	991	35	4	2362	4	IL12RB2	1	67861487	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08	759837	67861487	181389134	3	188											
HIST2H2BF	440689	broad.mit.edu	37	1	149398908	149398908	+	RNA	SNP	G	C	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	149398908	C	C	149398908	1	2	4	0	1	0	0	0	0	0	0	0	7187	1145	40	4		4	HIST2H2BF	1	149398908	RNA	SNP	G	TCGA-A3-3322-01A-01D-0966-08	81537421	149398908	99851713	4	189											
NUP210L	91181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154027277	154027277	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	154027277	T	G	154027277	3	3	4	1	0	0	0	0	1	0	0	0	10768	1841	64	5	2462	5	NUP210L	1	154027277	Missense_Mutation	SNP	T	TCGA-A3-3322-01A-01D-0966-08	4628369	154027277	95223344	5	190	5	2									
NUP210L	91181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154027278	154027278	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	154027278	T	A	154027278	4	1	4	1	0	0	0	0	0	1	0	0	10768	1792	62	5	2463	5	NUP210L	1	154027278	Nonsense_Mutation	SNP	T	TCGA-A3-3322-01A-01D-0966-08	1	154027278	95223343	6	191	5	2									
LAD1	3898	broad.mit.edu;ucsc.edu	37	1	201354880	201354880	+	Silent	SNP	T	G	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	201354880	G	G	201354880	2	3	4	1	0	0	0	0	0	0	0	1	8606	1770	62	5		5	LAD1	1	201354880	Silent	SNP	T	TCGA-A3-3322-01A-01D-0966-08	47327602	201354880	47895741	7	192	6	2									
LAD1	3898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201354881	201354881	+	Missense_Mutation	SNP	C	C	A	rs143101113	alternate_allele	TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	201354881	C	A	201354881	3	1	4	1	0	0	0	0	1	0	0	0	8606	884	31	4	502	4	LAD1	1	201354881	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	1	201354881	47895740	8	193	6	2									
LYST	1130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	235922372	235922372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	235922372	G	A	235922372	3	1	4	1	0	0	0	0	1	0	0	0	9135	1116	39	1	4748	1	LYST	1	235922372	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08	34567491	235922372	13328249	9	194											
AKT3	10000	broad.mit.edu	37	1	243859018	243859018	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	243859018	A	A	243859018	3	1	4	1	0	0	0	0	1	0	0	0	481	869	30	4	1488	4	AKT3	1	243859018	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	7936646	243859018	5391603	10	195											
COLEC11	78989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	3691555	3691555	+	Silent	SNP	C	C	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	3691555	C	T	3691555	2	4	4	1	0	0	0	0	0	0	0	1	3713	581	21	2		2	COLEC11	2	3691555	Silent	SNP	C	TCGA-A3-3322-01A-01D-0966-08		3691555	239507818	11	196											
NRBP1	29959	broad.mit.edu;ucsc.edu	37	2	27663340	27663340	+	Silent	SNP	C	A	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	27663340	A	A	27663340	2	1	4	1	0	0	0	0	0	0	0	1	10649	845	30	4		4	NRBP1	2	27663340	Silent	SNP	C	TCGA-A3-3322-01A-01D-0966-08	23971785	27663340	215536033	12	197											
MTA3	57504	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	42909669	42909669	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	42909669	C	G	42909669	3	3	4	1	0	0	0	0	1	0	0	0	9917	796	28	4	865	4	MTA3	2	42909669	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	15246329	42909669	200289704	13	198											
MSH6	2956	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	48032817	48032817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	48032817	C	A	48032817	3	1	4	1	0	0	0	0	1	0	0	0	9881	710	25	4	3643	4	MSH6	2	48032817	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	5123148	48032817	195166556	14	199											
MPHOSPH10	10199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	71368393	71368393	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	71368393	C	G	71368393	3	3	4	1	0	0	0	0	1	0	0	0	9732	681	24	4	1366	4	MPHOSPH10	2	71368393	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	23335576	71368393	171830980	15	200											
SFXN5	94097	hgsc.bcm.edu	37	2	73188297	73188298	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	73188298	-	G	73188297	7	5	4	1	0	1	1	0	0	0	0	0	14211	188	7	0	122	0	SFXN5	2	73188297	Frame_Shift_Ins	INS	-	TCGA-A3-3322-01A-01D-0966-08	1819904	73188297	170011076	16	201											
RAPH1	65059	broad.mit.edu;hgsc.bcm.edu	37	2	204356027	204356027	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	204356027	T	G	204356027	3	3	4	1	0	0	0	0	1	0	0	0	13063	1821	63	5	3835	5	RAPH1	2	204356027	Missense_Mutation	SNP	T	TCGA-A3-3322-01A-01D-0966-08	131167730	204356027	38843346	17	202											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52610585	52610585	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	-	52610585	T	-	52610585	7	5	4	1	0	1	0	1	0	0	0	0	11498	1606	56	0	1273	0	PBRM1	3	52610585	Frame_Shift_Del	DEL	T	TCGA-A3-3322-01A-01D-0966-08		52610585	145411845	18	203											
ZNF654	55279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	88189697	88189697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	88189697	A	G	88189697	3	3	4	1	0	0	0	0	1	0	0	0	18079	333	12	3	1239	3	ZNF654	3	88189697	Missense_Mutation	SNP	A	TCGA-A3-3322-01A-01D-0966-08	35579112	88189697	109832733	19	204											
NIT2	56954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	100058770	100058770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	100058770	C	G	100058770	3	3	4	1	0	0	0	0	1	0	0	0	10441	913	32	4	248	4	NIT2	3	100058770	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	11869073	100058770	97963660	20	205											
ENPEP	2028	broad.mit.edu;ucsc.edu	37	4	111409738	111409745	+	Frame_Shift_Del	DEL	AATCTTTT	-	-	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	AATCTTTT	AATCTTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	-	111409745	-	-	111409738	7	5	4	1	0	1	0	1	0	0	0	0	5130	14	1	0	692	0	ENPEP	4	111409738	Frame_Shift_Del	DEL	AATCTTTT	TCGA-A3-3322-01A-01D-0966-08		111409738	79744538	21	206											
RPS3A	6189	broad.mit.edu;hgsc.bcm.edu	37	4	152022142	152022142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	152022142	G	A	152022142	3	1	4	1	0	0	0	0	1	0	0	0	13657	1261	44	2	192	2	RPS3A	4	152022142	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08	40612404	152022142	39132134	22	207											
SLC23A1	9963	broad.mit.edu	37	5	138715429	138715429	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	138715429	T	T	138715429	3	4	4	1	0	0	0	0	1	0	0	0	14475	1319	46	4	961	4	SLC23A1	5	138715429	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08		138715429	42199831	23	208											
HIST1H2AJ	8331	broad.mit.edu	37	6	27782408	27782408	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	27782408	G	G	27782408	3	3	4	1	0	0	0	0	1	0	0	0	7143	1606	56	5	279	5	HIST1H2AJ	6	27782408	Missense_Mutation	SNP	T	TCGA-A3-3322-01A-01D-0966-08		27782408	143332659	24	209											
HLA-F	3134	broad.mit.edu;hgsc.bcm.edu	37	6	29694668	29694668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	29694668	G	A	29694668	3	1	4	1	0	0	0	0	1	0	0	0	7218	1029	36	2	1080	2	HLA-F	6	29694668	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08	1912260	29694668	141420399	25	210											
BAT2	0	broad.mit.edu	37	6	31599818	31599818	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	31599818	C	C	31599818	3	2	4	1	0	0	0	0	1	0	0	0	1319	304	11	5	3426	5	BAT2	6	31599818	Missense_Mutation	SNP	A	TCGA-A3-3322-01A-01D-0966-08	1905150	31599818	139515249	26	211											
PRIM2	5558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	57185310	57185310	+	Silent	SNP	C	C	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	57185310	C	T	57185310	2	4	4	1	0	0	0	0	0	0	0	1	12501	518	18	2		2	PRIM2	6	57185310	Silent	SNP	C	TCGA-A3-3322-01A-01D-0966-08	25585492	57185310	113929757	27	212											
MICALL2	79778	broad.mit.edu	37	7	1487214	1487214	+	Silent	SNP	C	T	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	1487214	T	T	1487214	2	4	4	1	0	0	0	0	0	0	0	1	9581	912	32	2		2	MICALL2	7	1487214	Silent	SNP	C	TCGA-A3-3322-01A-01D-0966-08		1487214	157651449	28	213											
VPS41	27072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	38816289	38816289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	38816289	G	A	38816289	3	1	4	1	0	0	0	0	1	0	0	0	17222	1294	45	2	1768	2	VPS41	7	38816289	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08	37329075	38816289	120322374	29	214											
SGCE	8910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94257637	94257637	+	Silent	SNP	T	T	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	94257637	T	A	94257637	2	1	4	1	0	0	0	0	0	0	0	1	14215	1799	63	5		5	SGCE	7	94257637	Silent	SNP	T	TCGA-A3-3322-01A-01D-0966-08	55441348	94257637	64881026	30	215											
ZNF467	168544	hgsc.bcm.edu	37	7	149462196	149462196	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	149462196	G	C	149462196	3	2	4	1	0	0	0	0	1	0	0	0	17939	1252	44	4	396	4	ZNF467	7	149462196	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08	55204559	149462196	9676467	31	216											
SDR16C5	195814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	57219234	57219234	+	Splice_Site	SNP	C	C	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	57219234	C	T	57219234	5	4	4	1	0	0	0	0	0	0	1	0	13984	521	18	2	230	2	SDR16C5	8	57219234	Splice_Site	SNP	C	TCGA-A3-3322-01A-01D-0966-08		57219234	89144788	32	217											
ENPP2	5168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	120569905	120569905	+	Silent	SNP	T	T	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	120569905	T	C	120569905	2	2	4	1	0	0	0	0	0	0	0	1	5132	1509	53	3		3	ENPP2	8	120569905	Silent	SNP	T	TCGA-A3-3322-01A-01D-0966-08	63350671	120569905	25794117	33	218											
ADCY8	114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	131896886	131896886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	131896886	C	T	131896886	3	4	4	1	0	0	0	0	1	0	0	0	300	652	23	1	1766	1	ADCY8	8	131896886	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	11326981	131896886	14467136	34	219											
PPAPDC2	403313	hgsc.bcm.edu	37	9	4662602	4662603	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	4662603	-	G	4662602	7	5	4	1	0	1	1	0	0	0	0	0	12302	768	27	0	229	0	PPAPDC2	9	4662602	Frame_Shift_Ins	INS	-	TCGA-A3-3322-01A-01D-0966-08		4662602	136550829	35	220											
ZBTB26	57684	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125681478	125681478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	125681478	C	A	125681478	3	1	4	1	0	0	0	0	1	0	0	0	17545	681	24	4	593	4	ZBTB26	9	125681478	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	121018876	125681478	15531953	36	221											
YME1L1	10730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	27431334	27431334	+	Missense_Mutation	SNP	C	C	G	rs143591480		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	27431334	C	G	27431334	3	3	4	1	0	0	0	0	1	0	0	0	17499	913	32	4	1802	4	YME1L1	10	27431334	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08		27431334	108103413	37	222											
TACC2	10579	hgsc.bcm.edu;ucsc.edu	37	10	123844479	123844479	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	-	123844479	C	-	123844479	7	5	4	1	0	1	0	1	0	0	0	0	15514	739	26	0	2474	0	TACC2	10	123844479	Frame_Shift_Del	DEL	C	TCGA-A3-3322-01A-01D-0966-08	96413145	123844479	11690268	38	223											
TTC12	54970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	113194723	113194723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	113194723	A	C	113194723	3	2	4	1	0	0	0	0	1	0	0	0	16691	246	9	5	240	5	TTC12	11	113194723	Missense_Mutation	SNP	A	TCGA-A3-3322-01A-01D-0966-08		113194723	21811793	39	224											
FAM55D	0	broad.mit.edu;hgsc.bcm.edu	37	11	114451052	114451052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	114451052	C	T	114451052	3	4	4	1	0	0	0	0	1	0	0	0	5594	565	20	2	741	2	FAM55D	11	114451052	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	1256329	114451052	20555464	40	225											
HSP90B1	7184	broad.mit.edu	37	12	104332226	104332226	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	104332226	G	G	104332226	3	3	4	1	0	0	0	0	1	0	0	0	7410	15	1	3	990	3	HSP90B1	12	104332226	Missense_Mutation	SNP	A	TCGA-A3-3322-01A-01D-0966-08		104332226	29519669	41	226											
HHIPL1	84439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	100129224	100129224	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	100129224	C	G	100129224	3	3	4	1	0	0	0	0	1	0	0	0	7100	855	30	4	1536	4	HHIPL1	14	100129224	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08		100129224	7220316	42	227											
PPP1R13B	23368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	104208221	104208222	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	104208222	-	G	104208221	7	5	4	1	0	1	1	0	0	0	0	0	12367	1799	63	0	1572	0	PPP1R13B	14	104208221	Frame_Shift_Ins	INS	-	TCGA-A3-3322-01A-01D-0966-08	4078997	104208221	3141319	43	228											
KIAA1024	23251	hgsc.bcm.edu;ucsc.edu	37	15	79749416	79749416	+	Silent	SNP	C	C	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	79749416	C	T	79749416	2	4	4	1	0	0	0	0	0	0	0	1	8212	477	17	2		2	KIAA1024	15	79749416	Silent	SNP	C	TCGA-A3-3322-01A-01D-0966-08		79749416	22781976	44	229											
TSC2	7249	broad.mit.edu;hgsc.bcm.edu	37	16	2132493	2132493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	2132493	G	A	2132493	3	1	4	1	0	0	0	0	1	0	0	0	16618	1145	40	1	3993	1	TSC2	16	2132493	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08		2132493	88222260	45	230											
GAS8	2622	broad.mit.edu	37	16	90099333	90099333	+	Splice_Site	SNP	G	A	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	90099333	A	A	90099333	5	1	4	1	0	0	0	0	0	0	1	0	6258	1275	44	2	510	2	GAS8	16	90099333	Splice_Site	SNP	G	TCGA-A3-3322-01A-01D-0966-08	87966840	90099333	255420	46	231											
C17orf75	64149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30665271	30665271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	30665271	T	G	30665271	3	3	4	1	0	0	0	0	1	0	0	0	1882	1490	52	5	771	5	C17orf75	17	30665271	Missense_Mutation	SNP	T	TCGA-A3-3322-01A-01D-0966-08		30665271	50529939	47	232											
CDK12	51755	broad.mit.edu;ucsc.edu	37	17	37650846	37650846	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	37650846	A	A	37650846	3	1	4	1	0	0	0	0	1	0	0	0	3130	1145	40	1	2336	1	CDK12	17	37650846	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08	6985575	37650846	43544364	48	233											
CNTNAP1	8506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40844591	40844591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	40844591	G	C	40844591	3	2	4	1	0	0	0	0	1	0	0	0	3648	1291	45	4	2671	4	CNTNAP1	17	40844591	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08	3193745	40844591	40350619	49	234											
HELZ	9931	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	65184580	65184580	+	Silent	SNP	T	T	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	65184580	T	C	65184580	2	2	4	1	0	0	0	0	0	0	0	1	7056	1838	64	3		3	HELZ	17	65184580	Silent	SNP	T	TCGA-A3-3322-01A-01D-0966-08	24339989	65184580	16010630	50	235											
DLGAP1	9229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	3502638	3502638	+	Silent	SNP	A	A	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	3502638	A	G	3502638	2	3	4	1	0	0	0	0	0	0	0	1	4561	407	15	3		3	DLGAP1	18	3502638	Silent	SNP	A	TCGA-A3-3322-01A-01D-0966-08		3502638	74574610	51	236											
ZCCHC2	54877	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	60241796	60241796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	G	60241796	A	G	60241796	3	3	4	1	0	0	0	0	1	0	0	0	17599	159	6	3	2532	3	ZCCHC2	18	60241796	Missense_Mutation	SNP	A	TCGA-A3-3322-01A-01D-0966-08	56739158	60241796	17835452	52	237											
CDH19	28513	hgsc.bcm.edu;ucsc.edu	37	18	64235860	64235860	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	-	64235860	T	-	64235860	7	5	4	1	0	1	0	1	0	0	0	0	3106	1617	56	0	2075	0	CDH19	18	64235860	Frame_Shift_Del	DEL	T	TCGA-A3-3322-01A-01D-0966-08	3994064	64235860	13841388	53	238											
SMARCA4	6597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11098575	11098575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	11098575	G	C	11098575	3	2	4	1	0	0	0	0	1	0	0	0	14783	1175	41	4	1111	4	SMARCA4	19	11098575	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08		11098575	48030408	54	239											
ZNF615	284370	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52496685	52496685	+	Silent	SNP	G	G	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	52496685	G	A	52496685	2	1	4	1	0	0	0	0	0	0	0	1	18052	958	34	2		2	ZNF615	19	52496685	Silent	SNP	G	TCGA-A3-3322-01A-01D-0966-08	41398110	52496685	6632298	55	240											
ZNF616	90317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52618981	52618981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	52618981	C	T	52618981	3	4	4	1	0	0	0	0	1	0	0	0	18053	884	31	1	913	1	ZNF616	19	52618981	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08	122296	52618981	6510002	56	241											
ZNF551	90233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58198816	58198816	+	Silent	SNP	T	T	C	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	C	58198816	T	C	58198816	2	2	4	1	0	0	0	0	0	0	0	1	17995	1442	50	3		3	ZNF551	19	58198816	Silent	SNP	T	TCGA-A3-3322-01A-01D-0966-08	5579835	58198816	930167	57	242											
PCNT	5116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47769001	47769001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	47769001	C	A	47769001	3	1	4	1	0	0	0	0	1	0	0	0	11597	827	29	4	1134	4	PCNT	21	47769001	Missense_Mutation	SNP	C	TCGA-A3-3322-01A-01D-0966-08		47769001	360894	58	243											
CERK	64781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	47116101	47116101	+	Silent	SNP	G	G	A	novel		TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	A	47116101	G	A	47116101	2	1	4	1	0	0	0	0	0	0	0	1	3269	1020	36	2		2	CERK	22	47116101	Silent	SNP	G	TCGA-A3-3322-01A-01D-0966-08		47116101	4188465	59	244											
TMEM187	8269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153247610	153247610	+	Missense_Mutation	SNP	G	G	T	rs139864308	bycluster;byfrequency;by1000genomes	TCGA-A3-3322-01A-01D-0966-08	TCGA-A3-3322-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f82a369-12e0-4c62-9319-35856c2ef8d5	6a5969e6-52fc-42b9-8b42-41b9da41f6b3	T	153247610	G	T	153247610	3	4	4	1	0	0	0	0	1	0	0	0	16121	1145	40	4	99	4	TMEM187	23	153247610	Missense_Mutation	SNP	G	TCGA-A3-3322-01A-01D-0966-08		153247610	2022950	60	245											
VHL	7428	hgsc.bcm.edu	37	3	10183844	10183844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3322-01A-01W-0898-10	TCGA-A3-3322-11A-01W-0898-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	954f4f72-3f27-45f5-ae17-1c9f59001b65	c36d4bf1-5b0f-425f-a1cb-990ed388747c	T	10183844	A	T	10183844	3	4	5	1	0	0	0	0	1	0	0	0	17174	159	6	5	315	5	VHL	3	10183844	Missense_Mutation	SNP	A	TCGA-A3-3322-01A-01W-0898-10		10183844	187838586	1	246											
DNAJB4	11080	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78481792	78481792	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	C	78481792	G	C	78481792	3	2	6	1	0	0	0	0	1	0	0	0	4624	942	33	4	885	4	DNAJB4	1	78481792	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08		78481792	170768829	1	247											
GBP1	2633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	89523725	89523725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	89523725	C	T	89523725	3	4	6	1	0	0	0	0	1	0	0	0	6280	565	20	2	978	2	GBP1	1	89523725	Missense_Mutation	SNP	C	TCGA-A3-3323-01A-01D-0966-08	11041933	89523725	159726896	2	248											
OLFML3	56944	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	114523687	114523687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	114523687	G	A	114523687	3	1	6	1	0	0	0	0	1	0	0	0	10866	942	33	2	527	2	OLFML3	1	114523687	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08	24999962	114523687	134726934	3	249											
PTPRC	5788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	198687389	198687389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	198687389	C	A	198687389	3	1	6	1	0	0	0	0	1	0	0	0	12810	854	30	4	1672	4	PTPRC	1	198687389	Missense_Mutation	SNP	C	TCGA-A3-3323-01A-01D-0966-08	84163702	198687389	50563232	4	250											
USH2A	7399	hgsc.bcm.edu;ucsc.edu	37	1	216051167	216051168	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	216051168	-	T	216051167	7	5	6	1	0	1	1	0	0	0	0	0	17048	913	32	0	7114	0	USH2A	1	216051167	Frame_Shift_Ins	INS	-	TCGA-A3-3323-01A-01D-0966-08	17363778	216051167	33199454	5	251											
C1orf198	84886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	230991424	230991424	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	230991424	C	T	230991424	4	4	6	1	0	0	0	0	0	1	0	0	2028	595	21	2	621	2	C1orf198	1	230991424	Nonsense_Mutation	SNP	C	TCGA-A3-3323-01A-01D-0966-08	14940257	230991424	18259197	6	252											
PSD4	23550	hgsc.bcm.edu	37	2	113940101	113940101	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	C	113940101	A	C	113940101	3	2	6	1	0	0	0	0	1	0	0	0	12659	275	10	5	70	5	PSD4	2	113940101	Missense_Mutation	SNP	A	TCGA-A3-3323-01A-01D-0966-08		113940101	129259272	7	253											
MCM6	4175	broad.mit.edu;hgsc.bcm.edu	37	2	136633848	136633848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	136633848	A	T	136633848	3	4	6	1	0	0	0	0	1	0	0	0	9398	43	2	5	2445	5	MCM6	2	136633848	Missense_Mutation	SNP	A	TCGA-A3-3323-01A-01D-0966-08	22693747	136633848	106565525	8	254											
SLC4A3	6508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220493280	220493280	+	Missense_Mutation	SNP	C	C	T	rs150796797	byfrequency	TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	220493280	C	T	220493280	3	4	6	1	0	0	0	0	1	0	0	0	14668	759	27	1	211	1	SLC4A3	2	220493280	Missense_Mutation	SNP	C	TCGA-A3-3323-01A-01D-0966-08	83859432	220493280	22706093	9	255											
SCN5A	6331	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38622777	38622777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	C	38622777	T	C	38622777	3	2	6	1	0	0	0	0	1	0	0	0	13935	1725	60	3	3225	3	SCN5A	3	38622777	Missense_Mutation	SNP	T	TCGA-A3-3323-01A-01D-0966-08		38622777	159399653	10	256											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52685756	52685756	+	Splice_Site	SNP	A	A	G	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	G	52685756	A	G	52685756	5	3	6	1	0	0	0	0	0	0	1	0	11498	405	14	3	4284	3	PBRM1	3	52685756	Splice_Site	SNP	A	TCGA-A3-3323-01A-01D-0966-08	14062979	52685756	145336674	11	257											
POPDC2	64091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	119378938	119378938	+	Silent	SNP	G	G	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	119378938	G	A	119378938	2	1	6	1	0	0	0	0	0	0	0	1	12262	929	33	2		2	POPDC2	3	119378938	Silent	SNP	G	TCGA-A3-3323-01A-01D-0966-08	66693182	119378938	78643492	12	258											
LRRC33	375387	hgsc.bcm.edu;ucsc.edu	37	3	196386769	196386775	+	Frame_Shift_Del	DEL	CCTCAGC	CCTCAGC	-	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	CCTCAGC	CCTCAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	-	196386775	CCTCAGC	-	196386769	7	5	6	1	0	1	0	1	0	0	0	0	8995	738	26	0	261	0	LRRC33	3	196386769	Frame_Shift_Del	DEL	CCTCAGC	TCGA-A3-3323-01A-01D-0966-08	77007831	196386769	1635661	13	259											
ATP10D	57205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	47538705	47538705	+	Silent	SNP	C	C	G	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	G	47538705	C	G	47538705	2	3	6	1	0	0	0	0	0	0	0	1	1118	900	32	4		4	ATP10D	4	47538705	Silent	SNP	C	TCGA-A3-3323-01A-01D-0966-08		47538705	143615571	14	260											
NKD2	85409	broad.mit.edu;ucsc.edu	37	5	1032288	1032288	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	C	1032288	C	C	1032288	3	2	6	1	0	0	0	0	1	0	0	0	10449	131	5	5	177	5	NKD2	5	1032288	Missense_Mutation	SNP	A	TCGA-A3-3323-01A-01D-0966-08		1032288	179882972	15	261											
HSPA9	3313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137902359	137902359	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	137902359	C	A	137902359	4	1	6	1	0	0	0	0	0	1	0	0	7424	864	30	4	1147	4	HSPA9	5	137902359	Nonsense_Mutation	SNP	C	TCGA-A3-3323-01A-01D-0966-08	136870071	137902359	43012901	16	262											
ARAP3	64411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141051674	141051674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	141051674	C	A	141051674	3	1	6	1	0	0	0	0	1	0	0	0	840	478	17	4	3150	4	ARAP3	5	141051674	Missense_Mutation	SNP	C	TCGA-A3-3323-01A-01D-0966-08	3149315	141051674	39863586	17	263											
SLC39A7	7922	hgsc.bcm.edu;ucsc.edu	37	6	33169301	33169307	+	Frame_Shift_Del	DEL	CCATGGC	CCATGGC	-	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	CCATGGC	CCATGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	-	33169307	CCATGGC	-	33169301	7	5	6	1	0	1	0	1	0	0	0	0	14636	738	26	0	281	0	SLC39A7	6	33169301	Frame_Shift_Del	DEL	CCATGGC	TCGA-A3-3323-01A-01D-0966-08		33169301	137945766	18	264											
BYSL	705	broad.mit.edu	37	6	41889389	41889389	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	41889389	T	T	41889389	3	4	6	1	0	0	0	0	1	0	0	0	1578	1116	39	4	91	4	BYSL	6	41889389	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08	8720088	41889389	129225678	19	265											
SLC29A4	222962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	5330777	5330777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	5330777	G	A	5330777	3	1	6	1	0	0	0	0	1	0	0	0	14550	1290	45	2	334	2	SLC29A4	7	5330777	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08		5330777	153807886	20	266											
HECW1	23072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	43484071	43484071	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	43484071	G	T	43484071	4	4	6	1	0	0	0	0	0	1	0	0	7049	1233	43	4	1334	4	HECW1	7	43484071	Nonsense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08	38153294	43484071	115654592	21	267											
MRPS24	64951	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	43906364	43906364	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	C	43906364	A	C	43906364	3	2	6	1	0	0	0	0	1	0	0	0	9842	11	1	5	69	5	MRPS24	7	43906364	Missense_Mutation	SNP	A	TCGA-A3-3323-01A-01D-0966-08	422293	43906364	115232299	22	268											
MUC17	140453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100686874	100686874	+	Silent	SNP	T	T	G	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	G	100686874	T	G	100686874	2	3	6	1	0	0	0	0	0	0	0	1	9981	1538	54	5		5	MUC17	7	100686874	Silent	SNP	T	TCGA-A3-3323-01A-01D-0966-08	56780510	100686874	58451789	23	269											
RELN	5649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	103130250	103130250	+	Silent	SNP	G	G	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	103130250	G	T	103130250	2	4	6	1	0	0	0	0	0	0	0	1	13233	929	33	4		4	RELN	7	103130250	Silent	SNP	G	TCGA-A3-3323-01A-01D-0966-08	2443376	103130250	56008413	24	270											
WNT2	7472	broad.mit.edu;hgsc.bcm.edu	37	7	116963052	116963052	+	RNA	SNP	C	C	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	116963052	C	A	116963052	1	1	6	0	1	0	0	0	0	0	0	0	17398	638	22	4		4	WNT2	7	116963052	RNA	SNP	C	TCGA-A3-3323-01A-01D-0966-08	13832802	116963052	42175611	25	271											
ZNF800	168850	broad.mit.edu	37	7	127014261	127014261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	127014261	A	A	127014261	3	1	6	1	0	0	0	0	1	0	0	0	18181	1377	48	2	873	2	ZNF800	7	127014261	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08	10051209	127014261	32124402	26	272											
C7orf45	136263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129847772	129847772	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	G	129847772	T	G	129847772	3	3	6	1	0	0	0	0	1	0	0	0	2397	1493	52	5	24	5	C7orf45	7	129847772	Missense_Mutation	SNP	T	TCGA-A3-3323-01A-01D-0966-08	2833511	129847772	29290891	27	273											
TRPV5	56302	hgsc.bcm.edu;ucsc.edu	37	7	142609708	142609708	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	-	142609708	G	-	142609708	7	5	6	1	0	1	0	1	0	0	0	0	16611	1335	47	0	473	0	TRPV5	7	142609708	Frame_Shift_Del	DEL	G	TCGA-A3-3323-01A-01D-0966-08	12761936	142609708	16528955	28	274											
AP3M2	10947	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	42015561	42015561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	42015561	G	A	42015561	3	1	6	1	0	0	0	0	1	0	0	0	748	1059	37	1	382	1	AP3M2	8	42015561	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08		42015561	104348461	29	275											
TRPM6	140803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	77417087	77417087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	77417087	T	A	77417087	3	1	6	1	0	0	0	0	1	0	0	0	16602	1609	56	5	4428	5	TRPM6	9	77417087	Missense_Mutation	SNP	T	TCGA-A3-3323-01A-01D-0966-08		77417087	63796344	30	276											
PSAT1	29968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	80923397	80923397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	80923397	G	A	80923397	3	1	6	1	0	0	0	0	1	0	0	0	12654	1145	40	1	660	1	PSAT1	9	80923397	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08	3506310	80923397	60290034	31	277											
FAM73B	84895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131804663	131804663	+	Silent	SNP	C	C	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	131804663	C	T	131804663	2	4	6	1	0	0	0	0	0	0	0	1	5625	610	22	2		2	FAM73B	9	131804663	Silent	SNP	C	TCGA-A3-3323-01A-01D-0966-08	50881266	131804663	9408768	32	278											
ITGA5	3678	broad.mit.edu;hgsc.bcm.edu	37	12	54798566	54798566	+	Silent	SNP	C	C	G	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	G	54798566	C	G	54798566	2	3	6	1	0	0	0	0	0	0	0	1	7886	465	17	4		4	ITGA5	12	54798566	Silent	SNP	C	TCGA-A3-3323-01A-01D-0966-08		54798566	79053329	33	279											
MBD6	114785	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57920770	57920770	+	Silent	SNP	T	T	G	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	G	57920770	T	G	57920770	2	3	6	1	0	0	0	0	0	0	0	1	9355	1596	56	5		5	MBD6	12	57920770	Silent	SNP	T	TCGA-A3-3323-01A-01D-0966-08	3122204	57920770	75931125	34	280											
CIT	11113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	120196473	120196473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	120196473	G	A	120196473	3	1	6	1	0	0	0	0	1	0	0	0	3440	1174	41	2	3868	2	CIT	12	120196473	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08	62275703	120196473	13655422	35	281											
DNAH10	196385	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124420000	124420000	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	C	124420000	G	C	124420000	3	2	6	1	0	0	0	0	1	0	0	0	4600	1174	41	4	13698	4	DNAH10	12	124420000	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08	4223527	124420000	9431895	36	282											
EP400	57634	broad.mit.edu	37	12	132445443	132445443	+	Silent	SNP	A	C	C	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	C	132445443	C	C	132445443	2	2	6	1	0	0	0	0	0	0	0	1	5151	146	6	5		5	EP400	12	132445443	Silent	SNP	A	TCGA-A3-3323-01A-01D-0966-08	8025443	132445443	1406452	37	283											
GOLGA5	9950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	93301996	93301996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	G	93301996	A	G	93301996	3	3	6	1	0	0	0	0	1	0	0	0	6563	101	4	3	2076	3	GOLGA5	14	93301996	Missense_Mutation	SNP	A	TCGA-A3-3323-01A-01D-0966-08		93301996	14047544	38	284											
DLL4	54567	broad.mit.edu	37	15	41222315	41222315	+	Splice_Site	SNP	G	T	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	41222315	T	T	41222315	5	4	6	1	0	0	0	0	0	0	1	0	4570	1275	44	4	343	4	DLL4	15	41222315	Splice_Site	SNP	G	TCGA-A3-3323-01A-01D-0966-08		41222315	61309077	39	285											
CCNB2	9133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59407028	59407028	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	59407028	C	T	59407028	4	4	6	1	0	0	0	0	0	1	0	0	2915	711	25	2	568	2	CCNB2	15	59407028	Nonsense_Mutation	SNP	C	TCGA-A3-3323-01A-01D-0966-08	18184713	59407028	43124364	40	286											
RPL4	6124	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	66795006	66795006	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	66795006	T	A	66795006	3	1	6	1	0	0	0	0	1	0	0	0	13608	1638	57	5	946	5	RPL4	15	66795006	Missense_Mutation	SNP	T	TCGA-A3-3323-01A-01D-0966-08	7387978	66795006	35736386	41	287											
GOLGA6A	342096	broad.mit.edu	37	15	74365099	74365099	+	Silent	SNP	C	A	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	74365099	A	A	74365099	2	1	6	1	0	0	0	0	0	0	0	1	6564	581	21	4		4	GOLGA6A	15	74365099	Silent	SNP	C	TCGA-A3-3323-01A-01D-0966-08	7570093	74365099	28166293	42	288											
KLHL25	64410	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	86312287	86312287	+	Missense_Mutation	SNP	C	C	T	rs142937016		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	86312287	C	T	86312287	3	4	6	1	0	0	0	0	1	0	0	0	8387	797	28	2	1018	2	KLHL25	15	86312287	Missense_Mutation	SNP	C	TCGA-A3-3323-01A-01D-0966-08	11947188	86312287	16219105	43	289											
TMEM8A	58986	hgsc.bcm.edu	37	16	422040	422041	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	G	422041	-	G	422040	7	5	6	1	0	1	1	0	0	0	0	0	16226	188	7	0	56	0	TMEM8A	16	422040	Frame_Shift_Ins	INS	-	TCGA-A3-3323-01A-01D-0966-08		422040	89932713	44	290											
CRYM	1428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	21272606	21272606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	21272606	G	T	21272606	3	4	6	1	0	0	0	0	1	0	0	0	3923	1020	36	4	103	4	CRYM	16	21272606	Missense_Mutation	SNP	G	TCGA-A3-3323-01A-01D-0966-08	20850566	21272606	69082147	45	291											
USP22	23326	broad.mit.edu;ucsc.edu	37	17	20931913	20931913	+	Silent	SNP	G	A	A	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	A	20931913	A	A	20931913	2	1	6	1	0	0	0	0	0	0	0	1	17066	1049	37	1		1	USP22	17	20931913	Silent	SNP	G	TCGA-A3-3323-01A-01D-0966-08		20931913	60263297	46	292											
AFG3L2	10939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	12367034	12367034	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	T	12367034	A	T	12367034	4	4	6	1	0	0	0	0	0	1	0	0	360	131	5	5	1963	5	AFG3L2	18	12367034	Nonsense_Mutation	SNP	A	TCGA-A3-3323-01A-01D-0966-08		12367034	65710214	47	293											
SERPINB13	5275	hgsc.bcm.edu;ucsc.edu	37	18	61255961	61255961	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	-	61255961	G	-	61255961	7	5	6	1	0	1	0	1	0	0	0	0	14113	933	33	0	62	0	SERPINB13	18	61255961	Frame_Shift_Del	DEL	G	TCGA-A3-3323-01A-01D-0966-08	48888927	61255961	16821287	48	294											
ZNF653	115950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11596575	11596575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	C	11596575	T	C	11596575	3	2	6	1	0	0	0	0	1	0	0	0	18078	1493	52	3	393	3	ZNF653	19	11596575	Missense_Mutation	SNP	T	TCGA-A3-3323-01A-01D-0966-08		11596575	47532408	49	295											
ZFP82	284406	hgsc.bcm.edu;ucsc.edu	37	19	36884285	36884292	+	Frame_Shift_Del	DEL	AAAGGCCT	AAAGGCCT	-	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	AAAGGCCT	AAAGGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	-	36884292	AAAGGCCT	-	36884285	7	5	6	1	0	1	0	1	0	0	0	0	17665	11	1	0	645	0	ZFP82	19	36884285	Frame_Shift_Del	DEL	AAAGGCCT	TCGA-A3-3323-01A-01D-0966-08	25287710	36884285	22244698	50	296											
TTYH1	57348	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54942314	54942314	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3323-01A-01D-0966-08	TCGA-A3-3323-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21c50574-7496-4be5-b723-1fdb980fb208	2c1405f2-a53e-43b2-843e-eebbfe8074fe	G	54942314	C	G	54942314	3	3	6	1	0	0	0	0	1	0	0	0	16751	478	17	4	1108	4	TTYH1	19	54942314	Missense_Mutation	SNP	C	TCGA-A3-3323-01A-01D-0966-08	18058029	54942314	4186669	51	297											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu	37	1	19505691	19505691	+	Silent	SNP	T	T	C	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	C	19505691	T	C	19505691	2	2	7	1	0	0	0	0	0	0	0	1	16916	1538	54	3		3	UBR4	1	19505691	Silent	SNP	T	TCGA-A3-3326-01A-01D-0966-08		19505691	229744930	1	298											
AIM1L	55057	hgsc.bcm.edu	37	1	26672402	26672403	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	26672403	-	G	26672402	7	5	7	1	0	1	1	0	0	0	0	0	431	203	7	0		0	AIM1L	1	26672402	Frame_Shift_Ins	INS	-	TCGA-A3-3326-01A-01D-0966-08	7166711	26672402	222578219	2	299											
SERINC2	347735	hgsc.bcm.edu	37	1	31902299	31902300	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	31902300	-	G	31902299	7	5	7	1	0	1	1	0	0	0	0	0	14093	175	7	0	957	0	SERINC2	1	31902299	Frame_Shift_Ins	INS	-	TCGA-A3-3326-01A-01D-0966-08	5229897	31902299	217348322	3	300											
BTF3L4	91408	broad.mit.edu;hgsc.bcm.edu	37	1	52552415	52552415	+	Silent	SNP	G	G	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	52552415	G	A	52552415	2	1	7	1	0	0	0	0	0	0	0	1	1554	933	33	2		2	BTF3L4	1	52552415	Silent	SNP	G	TCGA-A3-3326-01A-01D-0966-08	20650116	52552415	196698206	4	301											
LCE1E	353135	hgsc.bcm.edu	37	1	152760113	152760115	+	In_Frame_Del	DEL	ACT	ACT	-	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	-	152760115	ACT	-	152760113	7	5	7	1	0	1	0	1	0	0	0	0	8670	159	6	0	340	0	LCE1E	1	152760113	In_Frame_Del	DEL	ACT	TCGA-A3-3326-01A-01D-0966-08	100207698	152760113	96490508	5	302											
DCST2	127579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154995893	154995893	+	Silent	SNP	G	G	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	154995893	G	A	154995893	2	1	7	1	0	0	0	0	0	0	0	1	4305	987	35	2		2	DCST2	1	154995893	Silent	SNP	G	TCGA-A3-3326-01A-01D-0966-08	2235780	154995893	94254728	6	303											
GON4L	54856	broad.mit.edu;hgsc.bcm.edu	37	1	155721637	155721637	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	C	155721637	G	C	155721637	3	2	7	1	0	0	0	0	1	0	0	0	6579	1261	44	4	236	4	GON4L	1	155721637	Missense_Mutation	SNP	G	TCGA-A3-3326-01A-01D-0966-08	725744	155721637	93528984	7	304											
PAPPA2	60676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	176659299	176659299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	C	176659299	T	C	176659299	3	2	7	1	0	0	0	0	1	0	0	0	11440	1754	61	3	2178	3	PAPPA2	1	176659299	Missense_Mutation	SNP	T	TCGA-A3-3326-01A-01D-0966-08	20937662	176659299	72591322	8	305											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179593688	179593688	+	Silent	SNP	A	A	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	179593688	A	G	179593688	2	3	7	1	0	0	0	0	0	0	0	1	16747	156	6	3		3	TTN	2	179593688	Silent	SNP	A	TCGA-A3-3326-01A-01D-0966-08		179593688	63605685	9	306											
COL5A2	1290	hgsc.bcm.edu;ucsc.edu	37	2	189925460	189925464	+	Frame_Shift_Del	DEL	TCACC	TCACC	-	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	TCACC	TCACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	-	189925464	TCACC	-	189925460	7	5	7	1	0	1	0	1	0	0	0	0	3699	1435	50	0	2514	0	COL5A2	2	189925460	Frame_Shift_Del	DEL	TCACC	TCGA-A3-3326-01A-01D-0966-08	10331772	189925460	53273913	10	307											
COL4A3	1285	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228176506	228176506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	228176506	C	T	228176506	3	4	7	1	0	0	0	0	1	0	0	0	3693	739	26	2	5139	2	COL4A3	2	228176506	Missense_Mutation	SNP	C	TCGA-A3-3326-01A-01D-0966-08	38251046	228176506	15022867	11	308											
NGLY1	55768	broad.mit.edu;hgsc.bcm.edu	37	3	25824816	25824816	+	Silent	SNP	C	C	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	25824816	C	T	25824816	2	4	7	1	0	0	0	0	0	0	0	1	10405	912	32	2		2	NGLY1	3	25824816	Silent	SNP	C	TCGA-A3-3326-01A-01D-0966-08		25824816	172197614	12	309											
BSN	8927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49690033	49690033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	49690033	G	A	49690033	3	1	7	1	0	0	0	0	1	0	0	0	1532	1145	40	1	3062	1	BSN	3	49690033	Missense_Mutation	SNP	G	TCGA-A3-3326-01A-01D-0966-08	23865217	49690033	148332397	13	310											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52597379	52597379	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	-	52597379	C	-	52597379	7	5	7	1	0	1	0	1	0	0	0	0	11498	521	18	0	922	0	PBRM1	3	52597379	Frame_Shift_Del	DEL	C	TCGA-A3-3326-01A-01D-0966-08	2907346	52597379	145425051	14	311											
MYH15	22989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	108205348	108205348	+	Silent	SNP	G	G	C	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	C	108205348	G	C	108205348	2	2	7	1	0	0	0	0	0	0	0	1	10041	987	35	4		4	MYH15	3	108205348	Silent	SNP	G	TCGA-A3-3326-01A-01D-0966-08	55607969	108205348	89817082	15	312											
KPNA1	3836	broad.mit.edu;ucsc.edu	37	3	122160886	122160886	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	C	122160886	C	C	122160886	3	2	7	1	0	0	0	0	1	0	0	0	8436	1594	55	3	641	3	KPNA1	3	122160886	Missense_Mutation	SNP	T	TCGA-A3-3326-01A-01D-0966-08	13955538	122160886	75861544	16	313											
CDH10	1008	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	24491776	24491776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	24491776	C	T	24491776	3	4	7	1	0	0	0	0	1	0	0	0	3098	710	25	2	589	2	CDH10	5	24491776	Missense_Mutation	SNP	C	TCGA-A3-3326-01A-01D-0966-08		24491776	156423484	17	314											
KDM3B	51780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137708520	137708520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	137708520	G	T	137708520	3	4	7	1	0	0	0	0	1	0	0	0	8134	1357	47	4	356	4	KDM3B	5	137708520	Missense_Mutation	SNP	G	TCGA-A3-3326-01A-01D-0966-08	113216744	137708520	43206740	18	315											
FAT2	2196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150945790	150945790	+	Silent	SNP	T	T	C	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	C	150945790	T	C	150945790	2	2	7	1	0	0	0	0	0	0	0	1	5697	1606	56	3		3	FAT2	5	150945790	Silent	SNP	T	TCGA-A3-3326-01A-01D-0966-08	13237270	150945790	29969470	19	316											
MAK	4117	hgsc.bcm.edu	37	6	10796273	10796274	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	10796274	-	G	10796273	7	5	7	1	0	1	1	0	0	0	0	0	9204	755	27	0	794	0	MAK	6	10796273	Frame_Shift_Ins	INS	-	TCGA-A3-3326-01A-01D-0966-08		10796273	160318794	20	317											
NRSN1	140767	hgsc.bcm.edu;ucsc.edu	37	6	24145877	24145877	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	-	24145877	T	-	24145877	7	5	7	1	0	1	0	1	0	0	0	0	10669	1490	52	0	297	0	NRSN1	6	24145877	Frame_Shift_Del	DEL	T	TCGA-A3-3326-01A-01D-0966-08	13349604	24145877	146969190	21	318											
RPL10A	4736	hgsc.bcm.edu	37	6	35437244	35437247	+	Frame_Shift_Del	DEL	CCCA	CCCA	-	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	CCCA	CCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	-	35437247	CCCA	-	35437244	7	5	7	1	0	1	0	1	0	0	0	0	13568	623	22	0	262	0	RPL10A	6	35437244	Frame_Shift_Del	DEL	CCCA	TCGA-A3-3326-01A-01D-0966-08	11291367	35437244	135677823	22	319											
TBCC	6903	broad.mit.edu;hgsc.bcm.edu	37	6	42713803	42713803	+	Silent	SNP	G	G	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	42713803	G	A	42713803	2	1	7	1	0	0	0	0	0	0	0	1	15643	1103	39	1		1	TBCC	6	42713803	Silent	SNP	G	TCGA-A3-3326-01A-01D-0966-08	7276559	42713803	128401264	23	320											
ME1	4199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	83963360	83963360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	83963360	C	T	83963360	3	4	7	1	0	0	0	0	1	0	0	0	9424	826	29	2	948	2	ME1	6	83963360	Missense_Mutation	SNP	C	TCGA-A3-3326-01A-01D-0966-08	41249557	83963360	87151707	24	321											
TMEM181	57583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	159029391	159029391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	159029391	G	A	159029391	3	1	7	1	0	0	0	0	1	0	0	0	16112	1261	44	2	1145	2	TMEM181	6	159029391	Missense_Mutation	SNP	G	TCGA-A3-3326-01A-01D-0966-08	75066031	159029391	12085676	25	322											
TMEM195	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	15405181	15405181	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	-	15405181	A	-	15405181	7	5	7	1	0	1	0	1	0	0	0	0	16129	262	10	0	124	0	TMEM195	7	15405181	Frame_Shift_Del	DEL	A	TCGA-A3-3326-01A-01D-0966-08		15405181	143733482	26	323											
ZNF679	168417	broad.mit.edu;ucsc.edu	37	7	63726378	63726378	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	63726378	A	A	63726378	3	1	7	1	0	0	0	0	1	0	0	0	18098	1838	64	5	381	5	ZNF679	7	63726378	Missense_Mutation	SNP	T	TCGA-A3-3326-01A-01D-0966-08	48321197	63726378	95412285	27	324											
TRPV6	55503	broad.mit.edu;ucsc.edu	37	7	142572835	142572835	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	142572835	G	G	142572835	3	3	7	1	0	0	0	0	1	0	0	0	16612	391	14	3	1000	3	TRPV6	7	142572835	Missense_Mutation	SNP	A	TCGA-A3-3326-01A-01D-0966-08	78846457	142572835	16565828	28	325											
ZNF425	155054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	148801994	148801994	+	Silent	SNP	C	C	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	148801994	C	G	148801994	2	3	7	1	0	0	0	0	0	0	0	1	17911	697	25	4		4	ZNF425	7	148801994	Silent	SNP	C	TCGA-A3-3326-01A-01D-0966-08	6229159	148801994	10336669	29	326											
ABP1	26	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150554284	150554284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	150554284	C	A	150554284	3	1	7	1	0	0	0	0	1	0	0	0	98	912	32	4	728	4	ABP1	7	150554284	Missense_Mutation	SNP	C	TCGA-A3-3326-01A-01D-0966-08	1752290	150554284	8584379	30	327											
BLK	640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	11412944	11412944	+	Silent	SNP	C	C	G	rs149756811	alternate_allele	TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	11412944	C	G	11412944	2	3	7	1	0	0	0	0	0	0	0	1	1444	813	29	4		4	BLK	8	11412944	Silent	SNP	C	TCGA-A3-3326-01A-01D-0966-08		11412944	134951078	31	328											
FAM135B	51059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	139190851	139190851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	139190851	G	T	139190851	3	4	7	1	0	0	0	0	1	0	0	0	5453	1261	44	4	3308	4	FAM135B	8	139190851	Missense_Mutation	SNP	G	TCGA-A3-3326-01A-01D-0966-08	127777907	139190851	7173171	32	329											
INSC	387755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	15170770	15170770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	15170770	G	A	15170770	3	1	7	1	0	0	0	0	1	0	0	0	7771	1261	44	2	197	2	INSC	11	15170770	Missense_Mutation	SNP	G	TCGA-A3-3326-01A-01D-0966-08		15170770	119835746	33	330											
WT1	7490	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32421532	32421532	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	32421532	A	T	32421532	3	4	7	1	0	0	0	0	1	0	0	0	17420	449	16	5	513	5	WT1	11	32421532	Missense_Mutation	SNP	A	TCGA-A3-3326-01A-01D-0966-08	17250762	32421532	102584984	34	331											
ZFP91	80829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	58384897	58384897	+	Silent	SNP	C	C	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	58384897	C	A	58384897	2	1	7	1	0	0	0	0	0	0	0	1	17667	697	25	4		4	ZFP91	11	58384897	Silent	SNP	C	TCGA-A3-3326-01A-01D-0966-08	25963365	58384897	76621619	35	332											
MS4A3	932	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	59837676	59837676	+	Splice_Site	SNP	G	G	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	59837676	G	A	59837676	5	1	7	1	0	0	0	0	0	0	1	0	9868	1014	35	2	637	2	MS4A3	11	59837676	Splice_Site	SNP	G	TCGA-A3-3326-01A-01D-0966-08	1452779	59837676	75168840	36	333											
HSPA8	3312	broad.mit.edu;hgsc.bcm.edu	37	11	122930668	122930668	+	Silent	SNP	A	A	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	122930668	A	G	122930668	2	3	7	1	0	0	0	0	0	0	0	1	7423	407	15	3		3	HSPA8	11	122930668	Silent	SNP	A	TCGA-A3-3326-01A-01D-0966-08	63092992	122930668	12075848	37	334											
ARHGAP32	9743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	128839969	128839969	+	Silent	SNP	C	C	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	128839969	C	T	128839969	2	4	7	1	0	0	0	0	0	0	0	1	881	912	32	2		2	ARHGAP32	11	128839969	Silent	SNP	C	TCGA-A3-3326-01A-01D-0966-08	5909301	128839969	6166547	38	335											
PML	5371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	74336686	74336686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	74336686	C	G	74336686	3	3	7	1	0	0	0	0	1	0	0	0	12142	854	30	4	3037	4	PML	15	74336686	Missense_Mutation	SNP	C	TCGA-A3-3326-01A-01D-0966-08		74336686	28194706	39	336											
NAT15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3533548	3533548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	C	3533548	T	C	3533548	3	2	7	1	0	0	0	0	1	0	0	0	10183	1609	56	3	537	3	NAT15	16	3533548	Missense_Mutation	SNP	T	TCGA-A3-3326-01A-01D-0966-08		3533548	86821205	40	337	7	2									
NAT15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3533549	3533549	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	3533549	T	A	3533549	3	1	7	1	0	0	0	0	1	0	0	0	10183	1783	62	5	538	5	NAT15	16	3533549	Missense_Mutation	SNP	T	TCGA-A3-3326-01A-01D-0966-08	1	3533549	86821204	41	338	7	2									
ANKS4B	257629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	21261382	21261382	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	21261382	C	G	21261382	4	3	7	1	0	0	0	0	0	1	0	0	691	489	17	4	501	4	ANKS4B	16	21261382	Nonsense_Mutation	SNP	C	TCGA-A3-3326-01A-01D-0966-08	17727833	21261382	69093371	42	339											
GTF3C1	2975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	27497454	27497454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	27497454	C	A	27497454	3	1	7	1	0	0	0	0	1	0	0	0	6879	797	28	4	2663	4	GTF3C1	16	27497454	Missense_Mutation	SNP	C	TCGA-A3-3326-01A-01D-0966-08	6236072	27497454	62857299	43	340											
CHST4	10164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71570851	71570851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	71570851	C	T	71570851	3	4	7	1	0	0	0	0	1	0	0	0	3408	710	25	2	273	2	CHST4	16	71570851	Missense_Mutation	SNP	C	TCGA-A3-3326-01A-01D-0966-08	44073397	71570851	18783902	44	341											
SMCR8	140775	broad.mit.edu;ucsc.edu	37	17	18219186	18219186	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	18219186	G	G	18219186	3	3	7	1	0	0	0	0	1	0	0	0	14805	304	11	3	85	3	SMCR8	17	18219186	Missense_Mutation	SNP	A	TCGA-A3-3326-01A-01D-0966-08		18219186	62976024	45	342											
CYTSB	0	broad.mit.edu;ucsc.edu	37	17	20108270	20108270	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	20108270	G	G	20108270	3	3	7	1	0	0	0	0	1	0	0	0	4212	43	2	3	962	3	CYTSB	17	20108270	Missense_Mutation	SNP	A	TCGA-A3-3326-01A-01D-0966-08	1889084	20108270	61086940	46	343											
CNTNAP1	8506	broad.mit.edu;hgsc.bcm.edu	37	17	40836243	40836243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	40836243	A	G	40836243	3	3	7	1	0	0	0	0	1	0	0	0	3648	43	2	3	369	3	CNTNAP1	17	40836243	Missense_Mutation	SNP	A	TCGA-A3-3326-01A-01D-0966-08	20727973	40836243	40358967	47	344											
MKS1	54903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56285343	56285343	+	Silent	SNP	A	A	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	56285343	A	G	56285343	2	3	7	1	0	0	0	0	0	0	0	1	9616	175	7	3		3	MKS1	17	56285343	Silent	SNP	A	TCGA-A3-3326-01A-01D-0966-08	15449100	56285343	24909867	48	345											
CACNG4	27092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	65021007	65021007	+	Silent	SNP	C	C	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	65021007	C	T	65021007	2	4	7	1	0	0	0	0	0	0	0	1	2561	845	30	2		2	CACNG4	17	65021007	Silent	SNP	C	TCGA-A3-3326-01A-01D-0966-08	8735664	65021007	16174203	49	346											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	6966196	6966196	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	6966196	T	A	6966196	3	1	7	1	0	0	0	0	1	0	0	0	8612	1754	61	5	2287	5	LAMA1	18	6966196	Missense_Mutation	SNP	T	TCGA-A3-3326-01A-01D-0966-08		6966196	71111052	50	347											
ME2	4200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	48439249	48439249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	C	48439249	A	C	48439249	3	2	7	1	0	0	0	0	1	0	0	0	9425	359	13	5	331	5	ME2	18	48439249	Missense_Mutation	SNP	A	TCGA-A3-3326-01A-01D-0966-08	41473053	48439249	29637999	51	348											
MAST3	23031	broad.mit.edu	37	19	18234143	18234143	+	Silent	SNP	C	A	A	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	A	18234143	A	A	18234143	2	1	7	1	0	0	0	0	0	0	0	1	9333	755	27	4		4	MAST3	19	18234143	Silent	SNP	C	TCGA-A3-3326-01A-01D-0966-08		18234143	40894840	52	349											
CD22	933	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	35827039	35827039	+	Silent	SNP	G	G	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	35827039	G	T	35827039	2	4	7	1	0	0	0	0	0	0	0	1	2987	1045	37	4		4	CD22	19	35827039	Silent	SNP	G	TCGA-A3-3326-01A-01D-0966-08	17592896	35827039	23301944	53	350											
ZNF773	374928	broad.mit.edu;hgsc.bcm.edu	37	19	58018037	58018037	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	58018037	A	T	58018037	4	4	7	1	0	0	0	0	0	1	0	0	18158	131	5	5	588	5	ZNF773	19	58018037	Nonsense_Mutation	SNP	A	TCGA-A3-3326-01A-01D-0966-08	22190998	58018037	1110946	54	351											
ZNFX1	57169	hgsc.bcm.edu;ucsc.edu	37	20	47864087	47864093	+	Frame_Shift_Del	DEL	AGGCCAG	AGGCCAG	-	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	AGGCCAG	AGGCCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	-	47864093	AGGCCAG	-	47864087	7	5	7	1	0	1	0	1	0	0	0	0	18217	188	7	0	286	0	ZNFX1	20	47864087	Frame_Shift_Del	DEL	AGGCCAG	TCGA-A3-3326-01A-01D-0966-08		47864087	15161433	55	352											
CTCFL	140690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	56099123	56099123	+	Silent	SNP	A	A	G	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	G	56099123	A	G	56099123	2	3	7	1	0	0	0	0	0	0	0	1	4003	40	2	3		3	CTCFL	20	56099123	Silent	SNP	A	TCGA-A3-3326-01A-01D-0966-08	8235036	56099123	6926397	56	353											
PCK1	5105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	56138150	56138150	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	-	56138150	G	-	56138150	7	5	7	1	0	1	0	1	0	0	0	0	11588	942	33	0	691	0	PCK1	20	56138150	Frame_Shift_Del	DEL	G	TCGA-A3-3326-01A-01D-0966-08	39027	56138150	6887370	57	354											
BACH1	571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	30714928	30714928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3326-01A-01D-0966-08	TCGA-A3-3326-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60ed222b-cd0c-4bc5-acd0-39f207be3289	51796640-6ad6-4052-94c3-fa285e430708	T	30714928	G	T	30714928	3	4	7	1	0	0	0	0	1	0	0	0	1283	1261	44	4	1999	4	BACH1	21	30714928	Missense_Mutation	SNP	G	TCGA-A3-3326-01A-01D-0966-08		30714928	17414967	58	355											
PTCHD2	57540	broad.mit.edu	37	1	11561899	11561899	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	11561899	G	A	11561899	3	1	8	1	0	0	0	0	1	0	0	0	12743	1058	37	1	852	1	PTCHD2	1	11561899	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08		11561899	237688722	1	356											
RBBP4	5928	broad.mit.edu	37	1	33138433	33138433	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	33138433	C	T	33138433	2	4	8	1	0	0	0	0	0	0	0	1	13114	668	24	2		2	RBBP4	1	33138433	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	21576534	33138433	216112188	2	357											
CSF3R	1441	broad.mit.edu	37	1	36937914	36937914	+	Missense_Mutation	SNP	G	G	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	36937914	G	C	36937914	3	2	8	1	0	0	0	0	1	0	0	0	3939	1145	40	4	1818	4	CSF3R	1	36937914	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	3799481	36937914	212312707	3	358											
AHCYL1	10768	broad.mit.edu	37	1	110562247	110562247	+	Splice_Site	SNP	G	G	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	110562247	G	C	110562247	5	2	8	1	0	0	0	0	0	0	1	0	410	1362	47	4	1522	4	AHCYL1	1	110562247	Splice_Site	SNP	G	TCGA-A3-3331-01A-01W-0886-08	73624333	110562247	138688374	4	359											
LINGO4	339398	broad.mit.edu	37	1	151775111	151775111	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	151775111	G	A	151775111	3	1	8	1	0	0	0	0	1	0	0	0	8824	1261	44	2	1715	2	LINGO4	1	151775111	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	41212864	151775111	97475510	5	360											
FLG	2312	broad.mit.edu	37	1	152279034	152279035	+	In_Frame_Ins	INS	-	-	TGC			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	TGC	152279035	-	TGC	152279034	7	5	8	1	0	1	1	0	0	0	0	0	5929	1020	36	0	3861	0	FLG	1	152279034	In_Frame_Ins	INS	-	TCGA-A3-3331-01A-01W-0886-08	503923	152279034	96971587	6	361											
FLG	2312	broad.mit.edu	37	1	152285496	152285496	+	Silent	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	152285496	G	A	152285496	2	1	8	1	0	0	0	0	0	0	0	1	5929	1194	42	2		2	FLG	1	152285496	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08	6462	152285496	96965125	7	362											
FLG2	388698	broad.mit.edu	37	1	152327047	152327047	+	Missense_Mutation	SNP	C	C	T	rs140245320	byFrequency	TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	152327047	C	T	152327047	3	4	8	1	0	0	0	0	1	0	0	0	5930	536	19	1	3964	1	FLG2	1	152327047	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	41551	152327047	96923574	8	363											
CD1C	911	broad.mit.edu	37	1	158260923	158260923	+	Splice_Site	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	158260923	G	A	158260923	5	1	8	1	0	0	0	0	0	0	1	0	2978	985	34	2	67	2	CD1C	1	158260923	Splice_Site	SNP	G	TCGA-A3-3331-01A-01W-0886-08	5933876	158260923	90989698	9	364											
OR10J5	127385	broad.mit.edu	37	1	159505525	159505525	+	Silent	SNP	A	A	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	159505525	A	G	159505525	2	3	8	1	0	0	0	0	0	0	0	1	10919	407	15	3		3	OR10J5	1	159505525	Silent	SNP	A	TCGA-A3-3331-01A-01W-0886-08	1244602	159505525	89745096	10	365											
C1orf192	257177	broad.mit.edu	37	1	161335453	161335453	+	Missense_Mutation	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	161335453	G	T	161335453	3	4	8	1	0	0	0	0	1	0	0	0	2026	1203	42	4	330	4	C1orf192	1	161335453	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	1829928	161335453	87915168	11	366											
PPP1R12B	4660	broad.mit.edu	37	1	202398007	202398007	+	Missense_Mutation	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	202398007	G	T	202398007	3	4	8	1	0	0	0	0	1	0	0	0	12365	1290	45	4	893	4	PPP1R12B	1	202398007	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	41062554	202398007	46852614	12	367											
ZNF670	93474	broad.mit.edu	37	1	247200916	247200916	+	Silent	SNP	T	T	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	247200916	T	C	247200916	2	2	8	1	0	0	0	0	0	0	0	1	18089	1722	60	3		3	ZNF670	1	247200916	Silent	SNP	T	TCGA-A3-3331-01A-01W-0886-08	44802909	247200916	2049705	13	368											
RNASEH1	246243	broad.mit.edu	37	2	3604393	3604393	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	3604393	G	A	3604393	3	1	8	1	0	0	0	0	1	0	0	0	13424	1116	39	1	658	1	RNASEH1	2	3604393	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08		3604393	239594980	14	369											
HADHB	3032	broad.mit.edu	37	2	26486289	26486289	+	Missense_Mutation	SNP	A	A	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	26486289	A	T	26486289	3	4	8	1	0	0	0	0	1	0	0	0	6951	449	16	5	161	5	HADHB	2	26486289	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	22881896	26486289	216713084	15	370											
SLC5A6	8884	broad.mit.edu	37	2	27429383	27429383	+	Missense_Mutation	SNP	A	A	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	27429383	A	T	27429383	3	4	8	1	0	0	0	0	1	0	0	0	14682	159	6	5	1480	5	SLC5A6	2	27429383	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	943094	27429383	215769990	16	371											
BIRC6	57448	broad.mit.edu	37	2	32664671	32664671	+	Missense_Mutation	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	32664671	G	T	32664671	3	4	8	1	0	0	0	0	1	0	0	0	1438	1377	48	4	3789	4	BIRC6	2	32664671	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	5235288	32664671	210534702	17	372											
RTN4	57142	broad.mit.edu	37	2	55214633	55214633	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	55214633	G	A	55214633	3	1	8	1	0	0	0	0	1	0	0	0	13741	1348	47	2	387	2	RTN4	2	55214633	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	22549962	55214633	187984740	18	373											
ADD2	119	broad.mit.edu	37	2	70919544	70919544	+	Silent	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	70919544	G	T	70919544	2	4	8	1	0	0	0	0	0	0	0	1	305	1335	47	4		4	ADD2	2	70919544	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08	15704911	70919544	172279829	19	374											
POTEE	445582	broad.mit.edu	37	2	132020982	132020982	+	Missense_Mutation	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	132020982	C	T	132020982	3	4	8	1	0	0	0	0	1	0	0	0	12271	759	27	1	2012	1	POTEE	2	132020982	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	61101438	132020982	111178391	20	375											
ACVR1C	130399	broad.mit.edu	37	2	158395204	158395204	+	Missense_Mutation	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	158395204	C	T	158395204	3	4	8	1	0	0	0	0	1	0	0	0	222	864	30	2	252	2	ACVR1C	2	158395204	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	26374222	158395204	84804169	21	376											
LRP2	4036	broad.mit.edu	37	2	170135904	170135904	+	Missense_Mutation	SNP	T	T	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	170135904	T	G	170135904	3	3	8	1	0	0	0	0	1	0	0	0	8963	1493	52	5	12696	5	LRP2	2	170135904	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	11740700	170135904	73063469	22	377											
CASP8	841	broad.mit.edu	37	2	202137391	202137391	+	Missense_Mutation	SNP	A	A	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	202137391	A	G	202137391	3	3	8	1	0	0	0	0	1	0	0	0	2679	247	9	3	733	3	CASP8	2	202137391	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	32001487	202137391	41061982	23	378											
MAP2	4133	broad.mit.edu	37	2	210559316	210559317	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	210559317	-	A	210559316	7	5	8	1	0	1	1	0	0	0	0	0	9242	1291	45	0	2436	0	MAP2	2	210559316	Frame_Shift_Ins	INS	-	TCGA-A3-3331-01A-01W-0886-08	8421925	210559316	32640057	24	379											
SLC23A3	151295	broad.mit.edu	37	2	220026737	220026737	+	Missense_Mutation	SNP	T	T	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	220026737	T	A	220026737	3	1	8	1	0	0	0	0	1	0	0	0	14477	1435	50	5	109	5	SLC23A3	2	220026737	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	9467421	220026737	23172636	25	380											
THAP4	51078	broad.mit.edu	37	2	242572694	242572694	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	242572694	G	A	242572694	3	1	8	1	0	0	0	0	1	0	0	0	15858	1116	39	1	883	1	THAP4	2	242572694	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	22545957	242572694	626679	26	381											
THAP4	51078	broad.mit.edu	37	2	242572757	242572757	+	Missense_Mutation	SNP	C	C	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	242572757	C	G	242572757	3	3	8	1	0	0	0	0	1	0	0	0	15858	797	28	4	946	4	THAP4	2	242572757	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	63	242572757	626616	27	382											
ITPR1	3708	broad.mit.edu	37	3	4706866	4706866	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	4706866	C	T	4706866	2	4	8	1	0	0	0	0	0	0	0	1	7927	726	26	2		2	ITPR1	3	4706866	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08		4706866	193315564	28	383											
VHL	7428	broad.mit.edu	37	3	10188198	10188198	+	Splice_Site	SNP	G	G	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	10188198	G	C	10188198	5	2	8	1	0	0	0	0	0	0	1	0	17174	1275	44	4	347	4	VHL	3	10188198	Splice_Site	SNP	G	TCGA-A3-3331-01A-01W-0886-08	5481332	10188198	187834232	29	384											
SEC13	6396	broad.mit.edu	37	3	10345822	10345822	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	10345822	G	A	10345822	3	1	8	1	0	0	0	0	1	0	0	0	13993	1203	42	2	233	2	SEC13	3	10345822	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	157624	10345822	187676608	30	385											
PBRM1	55193	broad.mit.edu	37	3	52637659	52637659	+	Missense_Mutation	SNP	A	A	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	52637659	A	C	52637659	3	2	8	1	0	0	0	0	1	0	0	0	11498	72	3	5	2299	5	PBRM1	3	52637659	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	42291837	52637659	145384771	31	386											
PVRL3	25945	broad.mit.edu	37	3	110852894	110852894	+	Silent	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	110852894	G	A	110852894	2	1	8	1	0	0	0	0	0	0	0	1	12854	1020	36	2		2	PVRL3	3	110852894	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08	58215235	110852894	87169536	32	387											
SEC62	7095	broad.mit.edu	37	3	169710808	169710808	+	Missense_Mutation	SNP	A	A	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	169710808	A	C	169710808	3	2	8	1	0	0	0	0	1	0	0	0	14017	246	9	5	1187	5	SEC62	3	169710808	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	58857914	169710808	28311622	33	388											
CNGA1	1259	broad.mit.edu	37	4	47938619	47938619	+	Missense_Mutation	SNP	T	T	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	47938619	T	A	47938619	3	1	8	1	0	0	0	0	1	0	0	0	3598	1551	54	5	184	5	CNGA1	4	47938619	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08		47938619	143215657	34	389											
TMPRSS11F	389208	broad.mit.edu	37	4	68934474	68934474	+	Missense_Mutation	SNP	A	A	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	68934474	A	G	68934474	3	3	8	1	0	0	0	0	1	0	0	0	16255	101	4	3	715	3	TMPRSS11F	4	68934474	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	20995855	68934474	122219802	35	390											
ANKRD17	26057	broad.mit.edu	37	4	74043222	74043222	+	Missense_Mutation	SNP	T	T	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	74043222	T	G	74043222	3	3	8	1	0	0	0	0	1	0	0	0	646	1435	50	5	7521	5	ANKRD17	4	74043222	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	5108748	74043222	117111054	36	391											
PKD2	5311	broad.mit.edu	37	4	88983082	88983082	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	88983082	G	A	88983082	3	1	8	1	0	0	0	0	1	0	0	0	11973	1290	45	2	2082	2	PKD2	4	88983082	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	14939860	88983082	102171194	37	392	8	2									
PKD2	5311	broad.mit.edu	37	4	88983083	88983083	+	Missense_Mutation	SNP	A	A	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	88983083	A	T	88983083	3	4	8	1	0	0	0	0	1	0	0	0	11973	333	12	5	2083	5	PKD2	4	88983083	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	1	88983083	102171193	38	393	8	2									
GRID2	2895	broad.mit.edu	37	4	94031946	94031946	+	Missense_Mutation	SNP	A	A	G	rs61745072	byFrequency	TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	94031946	A	G	94031946	3	3	8	1	0	0	0	0	1	0	0	0	6779	101	4	3	591	3	GRID2	4	94031946	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	5048863	94031946	97122330	39	394											
DCHS2	54798	broad.mit.edu	37	4	155157334	155157334	+	Missense_Mutation	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	155157334	G	T	155157334	3	4	8	1	0	0	0	0	1	0	0	0	4290	942	33	4	1649	4	DCHS2	4	155157334	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	61125388	155157334	35996942	40	395											
AADAT	51166	broad.mit.edu	37	4	170991760	170991760	+	Missense_Mutation	SNP	T	T	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	170991760	T	C	170991760	3	2	8	1	0	0	0	0	1	0	0	0	14	1638	57	3	611	3	AADAT	4	170991760	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	15834426	170991760	20162516	41	396											
DNAH5	1767	broad.mit.edu	37	5	13883076	13883076	+	Silent	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	13883076	G	T	13883076	2	4	8	1	0	0	0	0	0	0	0	1	4606	1103	39	4		4	DNAH5	5	13883076	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08		13883076	167032184	42	397											
ERBB2IP	55914	broad.mit.edu	37	5	65350722	65350722	+	Silent	SNP	T	T	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	65350722	T	A	65350722	2	1	8	1	0	0	0	0	0	0	0	1	5209	1770	62	5		5	ERBB2IP	5	65350722	Silent	SNP	T	TCGA-A3-3331-01A-01W-0886-08	51467646	65350722	115564538	43	398											
GFRA3	2676	broad.mit.edu	37	5	137593617	137593617	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	137593617	C	A	137593617	3	1	8	1	0	0	0	0	1	0	0	0	6356	710	25	4	726	4	GFRA3	5	137593617	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	72242895	137593617	43321643	44	399											
PCDHA13	56136	broad.mit.edu	37	5	140262083	140262083	+	Missense_Mutation	SNP	T	T	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	140262083	T	A	140262083	3	1	8	1	0	0	0	0	1	0	0	0	11530	1638	57	5	232	5	PCDHA13	5	140262083	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	2668466	140262083	40653177	45	400											
TCERG1	10915	broad.mit.edu	37	5	145838725	145838725	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	145838725	C	T	145838725	2	4	8	1	0	0	0	0	0	0	0	1	15697	610	22	2		2	TCERG1	5	145838725	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	5576642	145838725	35076535	46	401											
GPX3	2878	broad.mit.edu	37	5	150407073	150407073	+	Missense_Mutation	SNP	A	A	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	150407073	A	T	150407073	3	4	8	1	0	0	0	0	1	0	0	0	6748	14	1	5	454	5	GPX3	5	150407073	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	4568348	150407073	30508187	47	402											
ITK	3702	broad.mit.edu	37	5	156650008	156650008	+	Missense_Mutation	SNP	G	G	C	rs142038079	byFrequency	TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	156650008	G	C	156650008	3	2	8	1	0	0	0	0	1	0	0	0	7916	1029	36	4	653	4	ITK	5	156650008	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	6242935	156650008	24265252	48	403											
NKAPL	222698	broad.mit.edu	37	6	28227518	28227518	+	Silent	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	28227518	G	A	28227518	2	1	8	1	0	0	0	0	0	0	0	1	10447	991	35	2		2	NKAPL	6	28227518	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08		28227518	142887549	49	404											
C2	717	broad.mit.edu	37	6	31902109	31902109	+	Silent	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	31902109	C	A	31902109	2	1	8	1	0	0	0	0	0	0	0	1	2076	754	26	4		4	C2	6	31902109	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	3674591	31902109	139212958	50	405											
DNAH8	1769	broad.mit.edu	37	6	38793935	38793935	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	38793935	C	A	38793935	3	1	8	1	0	0	0	0	1	0	0	0	4609	652	23	4	3298	4	DNAH8	6	38793935	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	6891826	38793935	132321132	51	406											
TDRD6	221400	broad.mit.edu	37	6	46658406	46658406	+	Silent	SNP	C	C	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	46658406	C	G	46658406	2	3	8	1	0	0	0	0	0	0	0	1	15746	813	29	4		4	TDRD6	6	46658406	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	7864471	46658406	124456661	52	407											
RWDD2A	112611	broad.mit.edu	37	6	83904237	83904237	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	-	83904237	T	-	83904237	7	5	8	1	0	1	0	1	0	0	0	0	13768	1725	60	0	69	0	RWDD2A	6	83904237	Frame_Shift_Del	DEL	T	TCGA-A3-3331-01A-01W-0886-08	37245831	83904237	87210830	53	408											
GPNMB	10457	broad.mit.edu	37	7	23306177	23306177	+	Missense_Mutation	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	23306177	G	T	23306177	3	4	8	1	0	0	0	0	1	0	0	0	6627	1290	45	4	1122	4	GPNMB	7	23306177	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08		23306177	135832486	54	409											
COBL	23242	broad.mit.edu	37	7	51096418	51096418	+	Missense_Mutation	SNP	G	G	A	rs150697717	byFrequency	TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	51096418	G	A	51096418	3	1	8	1	0	0	0	0	1	0	0	0	3655	1232	43	2	1426	2	COBL	7	51096418	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	27790241	51096418	108042245	55	410											
SPAM1	6677	broad.mit.edu	37	7	123599588	123599588	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	123599588	C	A	123599588	4	1	8	1	0	0	0	0	0	1	0	0	14999	489	17	4	1105	4	SPAM1	7	123599588	Nonsense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	72503170	123599588	35539075	56	411											
DUSP26	78986	broad.mit.edu	37	8	33449703	33449703	+	Missense_Mutation	SNP	C	C	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	33449703	C	G	33449703	3	3	8	1	0	0	0	0	1	0	0	0	4825	739	26	4	175	4	DUSP26	8	33449703	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08		33449703	112914319	57	412											
CSMD3	114788	broad.mit.edu	37	8	113694819	113694826	+	Frame_Shift_Del	DEL	TGCATTGA	TGCATTGA	-			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	-	113694826	TGCATTGA	-	113694819	7	5	8	1	0	1	0	1	0	0	0	0	3948	1683	59	0	8818	0	CSMD3	8	113694819	Frame_Shift_Del	DEL	TGCATTGA	TCGA-A3-3331-01A-01W-0886-08	80245116	113694819	32669203	58	413											
EFR3A	23167	broad.mit.edu	37	8	132998475	132998475	+	Missense_Mutation	SNP	T	T	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	132998475	T	A	132998475	3	1	8	1	0	0	0	0	1	0	0	0	4960	1841	64	5	1970	5	EFR3A	8	132998475	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	19303656	132998475	13365547	59	414											
ZNF623	9831	broad.mit.edu	37	8	144733541	144733541	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	144733541	C	A	144733541	3	1	8	1	0	0	0	0	1	0	0	0	18059	478	17	4	1501	4	ZNF623	8	144733541	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	11735066	144733541	1630481	60	415											
NAA35	60560	broad.mit.edu	37	9	88624791	88624791	+	Missense_Mutation	SNP	A	A	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	88624791	A	G	88624791	3	3	8	1	0	0	0	0	1	0	0	0	10130	449	16	3	1289	3	NAA35	9	88624791	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08		88624791	52588640	61	416											
ZNF510	22869	broad.mit.edu	37	9	99521470	99521470	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	99521470	C	A	99521470	4	1	8	1	0	0	0	0	0	1	0	0	17966	835	29	4	413	4	ZNF510	9	99521470	Nonsense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	10896679	99521470	41691961	62	417											
ZNF79	7633	broad.mit.edu	37	9	130206485	130206485	+	Missense_Mutation	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	130206485	C	T	130206485	3	4	8	1	0	0	0	0	1	0	0	0	18173	681	24	2	524	2	ZNF79	9	130206485	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	30685015	130206485	11006946	63	418											
LYZL1	84569	broad.mit.edu	37	10	29580865	29580865	+	Silent	SNP	T	T	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	29580865	T	A	29580865	2	1	8	1	0	0	0	0	0	0	0	1	9138	1538	54	5		5	LYZL1	10	29580865	Silent	SNP	T	TCGA-A3-3331-01A-01W-0886-08		29580865	105953882	64	419											
KIAA1462	57608	broad.mit.edu	37	10	30315600	30315600	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	-	30315600	A	-	30315600	7	5	8	1	0	1	0	1	0	0	0	0	8241	127	5	0	610	0	KIAA1462	10	30315600	Frame_Shift_Del	DEL	A	TCGA-A3-3331-01A-01W-0886-08	734735	30315600	105219147	65	420											
HPS6	79803	broad.mit.edu	37	10	103826147	103826147	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	103826147	G	T	103826147	4	4	8	1	0	0	0	0	0	1	0	0	7350	1175	41	4	918	4	HPS6	10	103826147	Nonsense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	73510547	103826147	31708600	66	421											
NRAP	4892	broad.mit.edu	37	10	115422479	115422479	+	Missense_Mutation	SNP	A	A	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	115422479	A	C	115422479	3	2	8	1	0	0	0	0	1	0	0	0	10645	98	4	5	5138	5	NRAP	10	115422479	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	11596332	115422479	20112268	67	422											
EIF3A	8661	broad.mit.edu	37	10	120801997	120801997	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	120801997	G	A	120801997	3	1	8	1	0	0	0	0	1	0	0	0	5014	1087	38	1	1129	1	EIF3A	10	120801997	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	5379518	120801997	14732750	68	423											
PSMD13	5719	broad.mit.edu	37	11	251910	251910	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	251910	C	T	251910	4	4	8	1	0	0	0	0	0	1	0	0	12706	711	25	2	1136	2	PSMD13	11	251910	Nonsense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08		251910	134754606	69	424											
OR52I2	143502	broad.mit.edu	37	11	4608123	4608123	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	4608123	G	A	4608123	3	1	8	1	0	0	0	0	1	0	0	0	11128	1319	46	2	83	2	OR52I2	11	4608123	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	4356213	4608123	130398393	70	425											
MRGPRX3	117195	broad.mit.edu	37	11	18159679	18159679	+	Missense_Mutation	SNP	G	G	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	18159679	G	C	18159679	3	2	8	1	0	0	0	0	1	0	0	0	9775	991	35	4	932	4	MRGPRX3	11	18159679	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	13551556	18159679	116846837	71	426											
TTC17	55761	broad.mit.edu	37	11	43465114	43465114	+	Missense_Mutation	SNP	G	G	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	43465114	G	C	43465114	3	2	8	1	0	0	0	0	1	0	0	0	16696	942	33	4	2557	4	TTC17	11	43465114	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	25305435	43465114	91541402	72	427											
CKAP5	9793	broad.mit.edu	37	11	46786750	46786750	+	Missense_Mutation	SNP	T	T	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	46786750	T	A	46786750	3	1	8	1	0	0	0	0	1	0	0	0	3447	1490	52	5	2698	5	CKAP5	11	46786750	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	3321636	46786750	88219766	73	428											
OR4C15	81309	broad.mit.edu	37	11	55322748	55322748	+	Missense_Mutation	SNP	A	A	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	55322748	A	T	55322748	3	4	8	1	0	0	0	0	1	0	0	0	11055	11	1	5	968	5	OR4C15	11	55322748	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	8535998	55322748	79683768	74	429											
PATL1	219988	broad.mit.edu	37	11	59425092	59425092	+	Missense_Mutation	SNP	T	T	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	59425092	T	C	59425092	3	2	8	1	0	0	0	0	1	0	0	0	11482	1725	60	3	1840	3	PATL1	11	59425092	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	4102344	59425092	75581424	75	430											
HNRNPUL2	221092	broad.mit.edu	37	11	62491447	62491447	+	Silent	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	62491447	C	A	62491447	2	1	8	1	0	0	0	0	0	0	0	1	7282	697	25	4		4	HNRNPUL2	11	62491447	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	3066355	62491447	72515069	76	431											
PRCP	5547	broad.mit.edu	37	11	82550318	82550319	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	-	82550319	CA	-	82550318	7	5	8	1	0	1	0	1	0	0	0	0	12459	581	21	0	431	0	PRCP	11	82550318	Frame_Shift_Del	DEL	CA	TCGA-A3-3331-01A-01W-0886-08	20058871	82550318	52456198	77	432											
TYR	7299	broad.mit.edu	37	11	88911925	88911925	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	88911925	C	A	88911925	3	1	8	1	0	0	0	0	1	0	0	0	16825	912	32	4	806	4	TYR	11	88911925	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	6361607	88911925	46094591	78	433											
ZBTB44	29068	broad.mit.edu	37	11	130131510	130131510	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	130131510	C	A	130131510	4	1	8	1	0	0	0	0	0	1	0	0	17557	922	32	4	1122	4	ZBTB44	11	130131510	Nonsense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	41219585	130131510	4875006	79	434											
B4GALNT3	283358	broad.mit.edu	37	12	658990	658990	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	658990	C	T	658990	2	4	8	1	0	0	0	0	0	0	0	1	1268	738	26	2		2	B4GALNT3	12	658990	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08		658990	133192905	80	435											
WNK1	65125	broad.mit.edu	37	12	1009828	1009828	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	1009828	C	A	1009828	3	1	8	1	0	0	0	0	1	0	0	0	17389	594	21	4	8239	4	WNK1	12	1009828	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	350838	1009828	132842067	81	436											
CACNA1C	775	broad.mit.edu	37	12	2800282	2800282	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	2800282	G	T	2800282	4	4	8	1	0	0	0	0	0	1	0	0	2542	943	33	4	7229	4	CACNA1C	12	2800282	Nonsense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	1790454	2800282	131051613	82	437											
SLCO1C1	53919	broad.mit.edu	37	12	20874920	20874920	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	20874920	G	A	20874920	3	1	8	1	0	0	0	0	1	0	0	0	14738	942	33	2	984	2	SLCO1C1	12	20874920	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	18074638	20874920	112976975	83	438	9	2									
SLCO1C1	53919	broad.mit.edu	37	12	20874921	20874921	+	Missense_Mutation	SNP	A	A	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	20874921	A	G	20874921	3	3	8	1	0	0	0	0	1	0	0	0	14738	333	12	3	985	3	SLCO1C1	12	20874921	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	1	20874921	112976974	84	439	9	2									
ESPL1	9700	broad.mit.edu	37	12	53683289	53683289	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	53683289	G	A	53683289	3	1	8	1	0	0	0	0	1	0	0	0	5255	1087	38	1	5106	1	ESPL1	12	53683289	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	32808368	53683289	80168606	85	440											
CD63	967	broad.mit.edu	37	12	56120509	56120509	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	56120509	G	A	56120509	3	1	8	1	0	0	0	0	1	0	0	0	3031	1059	37	1	331	1	CD63	12	56120509	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	2437220	56120509	77731386	86	441											
MBD6	114785	broad.mit.edu	37	12	57918128	57918128	+	Silent	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	57918128	G	T	57918128	2	4	8	1	0	0	0	0	0	0	0	1	9355	1219	43	4		4	MBD6	12	57918128	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08	1797619	57918128	75933767	87	442											
GRIP1	23426	broad.mit.edu	37	12	66838418	66838418	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	66838418	G	A	66838418	4	1	8	1	0	0	0	0	0	1	0	0	6794	1124	39	1	1805	1	GRIP1	12	66838418	Nonsense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	8920290	66838418	67013477	88	443											
SPIC	121599	broad.mit.edu	37	12	101876667	101876668	+	Frame_Shift_Ins	INS	-	-	G	rs140414335	byFrequency	TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	101876668	-	G	101876667	7	5	8	1	0	1	1	0	0	0	0	0	15063	72	3	0	316	0	SPIC	12	101876667	Frame_Shift_Ins	INS	-	TCGA-A3-3331-01A-01W-0886-08	35038249	101876667	31975228	89	444											
CCDC63	160762	broad.mit.edu	37	12	111318996	111318996	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	111318996	G	A	111318996	3	1	8	1	0	0	0	0	1	0	0	0	2836	1058	37	1	771	1	CCDC63	12	111318996	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	9442329	111318996	22532899	90	445											
OGFOD2	79676	broad.mit.edu	37	12	123463114	123463114	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	123463114	G	A	123463114	3	1	8	1	0	0	0	0	1	0	0	0	10849	1116	39	1	363	1	OGFOD2	12	123463114	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	12144118	123463114	10388781	91	446											
ALG11	440138	broad.mit.edu	37	13	52598423	52598423	+	Missense_Mutation	SNP	A	A	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	52598423	A	T	52598423	3	4	8	1	0	0	0	0	1	0	0	0	513	72	3	5	567	5	ALG11	13	52598423	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08		52598423	62571455	92	447											
IPO5	3843	broad.mit.edu	37	13	98671935	98671935	+	Silent	SNP	C	C	A	rs145166442		TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	98671935	C	A	98671935	2	1	8	1	0	0	0	0	0	0	0	1	7803	816	29	4		4	IPO5	13	98671935	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	46073512	98671935	16497943	93	448											
TMCO3	55002	broad.mit.edu	37	13	114150116	114150116	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	114150116	G	A	114150116	3	1	8	1	0	0	0	0	1	0	0	0	16009	1319	46	2	222	2	TMCO3	13	114150116	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	15478181	114150116	1019762	94	449											
SPTB	6710	broad.mit.edu	37	14	65240106	65240106	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	65240106	C	T	65240106	2	4	8	1	0	0	0	0	0	0	0	1	15130	796	28	2		2	SPTB	14	65240106	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08		65240106	42109434	95	450											
ZFYVE26	23503	broad.mit.edu	37	14	68274334	68274334	+	Silent	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	68274334	G	T	68274334	2	4	8	1	0	0	0	0	0	0	0	1	17680	1086	38	4		4	ZFYVE26	14	68274334	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08	3034228	68274334	39075206	96	451											
SIPA1L1	26037	broad.mit.edu	37	14	72054754	72054755	+	Frame_Shift_Ins	INS	-	-	C	rs12884638	byFrequency	TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	72054755	-	C	72054754	7	5	8	1	0	1	1	0	0	0	0	0	14342	262	10	0	167	0	SIPA1L1	14	72054754	Frame_Shift_Ins	INS	-	TCGA-A3-3331-01A-01W-0886-08	3780420	72054754	35294786	97	452											
DYNC1H1	1778	broad.mit.edu	37	14	102510938	102510938	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	-	102510938	G	-	102510938	7	5	8	1	0	1	0	1	0	0	0	0	4843	991	35	0	13195	0	DYNC1H1	14	102510938	Frame_Shift_Del	DEL	G	TCGA-A3-3331-01A-01W-0886-08	30456184	102510938	4838602	98	453											
EIF3J	8669	broad.mit.edu	37	15	44853257	44853257	+	Silent	SNP	A	A	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	44853257	A	T	44853257	2	4	8	1	0	0	0	0	0	0	0	1	5022	291	11	5		5	EIF3J	15	44853257	Silent	SNP	A	TCGA-A3-3331-01A-01W-0886-08		44853257	57678135	99	454											
DUOX2	50506	broad.mit.edu	37	15	45389452	45389452	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	45389452	C	T	45389452	2	4	8	1	0	0	0	0	0	0	0	1	4803	639	23	1		1	DUOX2	15	45389452	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	536195	45389452	57141940	100	455											
CCNB2	9133	broad.mit.edu	37	15	59409486	59409486	+	Silent	SNP	T	T	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	59409486	T	C	59409486	2	2	8	1	0	0	0	0	0	0	0	1	2915	1471	51	3		3	CCNB2	15	59409486	Silent	SNP	T	TCGA-A3-3331-01A-01W-0886-08	14020034	59409486	43121906	101	456											
NR2F2	7026	broad.mit.edu	37	15	96877541	96877541	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	96877541	G	A	96877541	3	1	8	1	0	0	0	0	1	0	0	0	10635	1203	42	2	732	2	NR2F2	15	96877541	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	37468055	96877541	5653851	102	457											
IL32	9235	broad.mit.edu	37	16	3119294	3119294	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	3119294	C	A	3119294	3	1	8	1	0	0	0	0	1	0	0	0	7699	623	22	4	527	4	IL32	16	3119294	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08		3119294	87235459	103	458											
TEKT5	146279	broad.mit.edu	37	16	10721462	10721462	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	-	10721462	G	-	10721462	7	5	8	1	0	1	0	1	0	0	0	0	15768	1116	39	0	25	0	TEKT5	16	10721462	Frame_Shift_Del	DEL	G	TCGA-A3-3331-01A-01W-0886-08	7602168	10721462	79633291	104	459											
TXNDC11	51061	broad.mit.edu	37	16	11785336	11785336	+	Silent	SNP	T	T	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	11785336	T	C	11785336	2	2	8	1	0	0	0	0	0	0	0	1	16804	1567	55	3		3	TXNDC11	16	11785336	Silent	SNP	T	TCGA-A3-3331-01A-01W-0886-08	1063874	11785336	78569417	105	460											
CPPED1	55313	broad.mit.edu	37	16	12798724	12798725	+	Frame_Shift_Ins	INS	-	-	G	rs145004672	by1000genomes	TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	12798725	-	G	12798724	7	5	8	1	0	1	1	0	0	0	0	0	3824	536	19	0	480	0	CPPED1	16	12798724	Frame_Shift_Ins	INS	-	TCGA-A3-3331-01A-01W-0886-08	1013388	12798724	77556029	106	461											
NFATC3	4775	broad.mit.edu	37	16	68160421	68160421	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	68160421	G	A	68160421	3	1	8	1	0	0	0	0	1	0	0	0	10371	1029	36	2	1319	2	NFATC3	16	68160421	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	55361697	68160421	22194332	107	462											
MLYCD	23417	broad.mit.edu	37	16	83948731	83948731	+	Missense_Mutation	SNP	G	G	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	83948731	G	C	83948731	3	2	8	1	0	0	0	0	1	0	0	0	9645	933	33	4	1137	4	MLYCD	16	83948731	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	15788310	83948731	6406022	108	463											
ALOXE3	59344	broad.mit.edu	37	17	8000098	8000098	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	8000098	C	T	8000098	2	4	8	1	0	0	0	0	0	0	0	1	542	796	28	2		2	ALOXE3	17	8000098	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08		8000098	73195112	109	464											
SLC13A2	9058	broad.mit.edu	37	17	26818764	26818764	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	26818764	G	A	26818764	3	1	8	1	0	0	0	0	1	0	0	0	14405	1116	39	1	941	1	SLC13A2	17	26818764	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	18818666	26818764	54376446	110	465											
TIAF1	9220	broad.mit.edu	37	17	27400913	27400913	+	Missense_Mutation	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	27400913	C	T	27400913	3	4	8	1	0	0	0	0	1	0	0	0	15900	507	18	2	46	2	TIAF1	17	27400913	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	582149	27400913	53794297	111	466											
TMIGD1	388364	broad.mit.edu	37	17	28651878	28651878	+	Nonsense_Mutation	SNP	G	G	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	28651878	G	C	28651878	4	2	8	1	0	0	0	0	0	1	0	0	16242	1294	45	4	208	4	TMIGD1	17	28651878	Nonsense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	1250965	28651878	52543332	112	467											
SLFN5	162394	broad.mit.edu	37	17	33591512	33591512	+	Silent	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	33591512	C	A	33591512	2	1	8	1	0	0	0	0	0	0	0	1	14750	784	28	4		4	SLFN5	17	33591512	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	4939634	33591512	47603698	113	468											
FZD2	2535	broad.mit.edu	37	17	42636477	42636477	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	42636477	C	A	42636477	3	1	8	1	0	0	0	0	1	0	0	0	6137	507	18	4	1423	4	FZD2	17	42636477	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	9044965	42636477	38558733	114	469											
SPOP	8405	broad.mit.edu	37	17	47688691	47688691	+	Missense_Mutation	SNP	G	G	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	47688691	G	C	47688691	3	2	8	1	0	0	0	0	1	0	0	0	15096	963	34	4	535	4	SPOP	17	47688691	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	5052214	47688691	33506519	115	470											
AKAP1	8165	broad.mit.edu	37	17	55183914	55183914	+	Silent	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	55183914	G	T	55183914	2	4	8	1	0	0	0	0	0	0	0	1	445	1306	46	4		4	AKAP1	17	55183914	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08	7495223	55183914	26011296	116	471											
DNAH17	8632	broad.mit.edu	37	17	76475152	76475152	+	Missense_Mutation	SNP	C	C	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	76475152	C	G	76475152	3	3	8	1	0	0	0	0	1	0	0	0	4603	564	20	4	5565	4	DNAH17	17	76475152	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	21291238	76475152	4720058	117	472											
CCBE1	147372	broad.mit.edu	37	18	57106799	57106799	+	Silent	SNP	C	C	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	57106799	C	G	57106799	2	3	8	1	0	0	0	0	0	0	0	1	2733	610	22	4		4	CCBE1	18	57106799	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08		57106799	20970449	118	473											
MAST1	22983	broad.mit.edu	37	19	12962788	12962788	+	Missense_Mutation	SNP	C	C	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	12962788	C	G	12962788	3	3	8	1	0	0	0	0	1	0	0	0	9331	565	20	4	845	4	MAST1	19	12962788	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08		12962788	46166195	119	474											
GMIP	51291	broad.mit.edu	37	19	19746264	19746264	+	Missense_Mutation	SNP	T	T	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	19746264	T	C	19746264	3	2	8	1	0	0	0	0	1	0	0	0	6498	1551	54	3	1420	3	GMIP	19	19746264	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	6783476	19746264	39382719	120	475											
ZNF708	7562	broad.mit.edu	37	19	21492129	21492129	+	Missense_Mutation	SNP	T	T	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	21492129	T	A	21492129	3	1	8	1	0	0	0	0	1	0	0	0	18124	1754	61	5	1554	5	ZNF708	19	21492129	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	1745865	21492129	37636854	121	476											
LIPE	3991	broad.mit.edu	37	19	42930774	42930774	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	42930774	C	T	42930774	2	4	8	1	0	0	0	0	0	0	0	1	8828	523	19	1		1	LIPE	19	42930774	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	21438645	42930774	16198209	122	477											
PSG7	5676	broad.mit.edu	37	19	43439883	43439883	+	RNA	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	43439883	G	T	43439883	1	4	8	0	1	0	0	0	0	0	0	0	12670	1357	47	4		4	PSG7	19	43439883	RNA	SNP	G	TCGA-A3-3331-01A-01W-0886-08	509109	43439883	15689100	123	478											
DMWD	1762	broad.mit.edu	37	19	46294225	46294225	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	46294225	C	A	46294225	3	1	8	1	0	0	0	0	1	0	0	0	4595	797	28	4	1478	4	DMWD	19	46294225	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	2854342	46294225	12834758	124	479											
NLRP8	126205	broad.mit.edu	37	19	56473528	56473528	+	Missense_Mutation	SNP	G	G	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	56473528	G	C	56473528	3	2	8	1	0	0	0	0	1	0	0	0	10490	1029	36	4	2152	4	NLRP8	19	56473528	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	10179303	56473528	2655455	125	480											
SIRPA	140885	broad.mit.edu	37	20	1902132	1902132	+	Silent	SNP	A	A	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	1902132	A	T	1902132	2	4	8	1	0	0	0	0	0	0	0	1	14345	146	6	5		5	SIRPA	20	1902132	Silent	SNP	A	TCGA-A3-3331-01A-01W-0886-08		1902132	61123388	126	481											
SLC23A2	9962	broad.mit.edu	37	20	4864398	4864398	+	Silent	SNP	T	T	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	4864398	T	G	4864398	2	3	8	1	0	0	0	0	0	0	0	1	14476	1625	57	5		5	SLC23A2	20	4864398	Silent	SNP	T	TCGA-A3-3331-01A-01W-0886-08	2962266	4864398	58161122	127	482											
MCM8	84515	broad.mit.edu	37	20	5933143	5933143	+	Silent	SNP	A	A	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	5933143	A	C	5933143	2	2	8	1	0	0	0	0	0	0	0	1	9400	204	8	5		5	MCM8	20	5933143	Silent	SNP	A	TCGA-A3-3331-01A-01W-0886-08	1068745	5933143	57092377	128	483											
PLCB1	23236	broad.mit.edu	37	20	8703023	8703023	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	8703023	C	T	8703023	2	4	8	1	0	0	0	0	0	0	0	1	12034	535	19	1		1	PLCB1	20	8703023	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	2769880	8703023	54322497	129	484											
SNAP25	6616	broad.mit.edu	37	20	10258335	10258335	+	Silent	SNP	G	G	A	rs147866099	byFrequency	TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	10258335	G	A	10258335	2	1	8	1	0	0	0	0	0	0	0	1	14843	1074	38	1		1	SNAP25	20	10258335	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08	1555312	10258335	52767185	130	485											
TOX2	84969	broad.mit.edu	37	20	42635213	42635213	+	Silent	SNP	C	C	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	42635213	C	T	42635213	2	4	8	1	0	0	0	0	0	0	0	1	16390	535	19	1		1	TOX2	20	42635213	Silent	SNP	C	TCGA-A3-3331-01A-01W-0886-08	32376878	42635213	20390307	131	486											
CECR1	51816	broad.mit.edu	37	22	17662759	17662760	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	17662760	-	C	17662759	7	5	8	1	0	1	1	0	0	0	0	0	3207	1435	50	0	150	0	CECR1	22	17662759	Frame_Shift_Ins	INS	-	TCGA-A3-3331-01A-01W-0886-08		17662759	33641807	132	487											
DGCR2	9993	broad.mit.edu	37	22	19055739	19055739	+	Splice_Site	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	19055739	C	A	19055739	5	1	8	1	0	0	0	0	0	0	1	0	4463	927	32	4	1482	4	DGCR2	22	19055739	Splice_Site	SNP	C	TCGA-A3-3331-01A-01W-0886-08	1392980	19055739	32248827	133	488											
LARGE	9215	broad.mit.edu	37	22	33670592	33670592	+	Silent	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	33670592	G	A	33670592	2	1	8	1	0	0	0	0	0	0	0	1	8634	962	34	2		2	LARGE	22	33670592	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08	14614853	33670592	17633974	134	489											
EFCAB6	64800	broad.mit.edu	37	22	43924839	43924839	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	43924839	C	A	43924839	3	1	8	1	0	0	0	0	1	0	0	0	4941	797	28	4	109	4	EFCAB6	22	43924839	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	10254247	43924839	7379727	135	490											
NHS	4810	broad.mit.edu	37	X	17745772	17745772	+	Silent	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	17745772	G	A	17745772	2	1	8	1	0	0	0	0	0	0	0	1	10418	1074	38	1		1	NHS	23	17745772	Silent	SNP	G	TCGA-A3-3331-01A-01W-0886-08		17745772	137524788	136	491											
MAGEB6	158809	broad.mit.edu	37	X	26212243	26212243	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	26212243	C	A	26212243	3	1	8	1	0	0	0	0	1	0	0	0	9186	855	30	4	282	4	MAGEB6	23	26212243	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	8466471	26212243	129058317	137	492											
MID1IP1	58526	broad.mit.edu	37	X	38664687	38664687	+	Missense_Mutation	SNP	G	G	T			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	T	38664687	G	T	38664687	3	4	8	1	0	0	0	0	1	0	0	0	9584	1087	38	4	490	4	MID1IP1	23	38664687	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	12452444	38664687	116605873	138	493											
DGKK	139189	broad.mit.edu	37	X	50129521	50129521	+	RNA	SNP	T	T	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	50129521	T	A	50129521	1	1	8	0	1	0	0	0	0	0	0	0	4474	1638	57	5		5	DGKK	23	50129521	RNA	SNP	T	TCGA-A3-3331-01A-01W-0886-08	11464834	50129521	105141039	139	494											
KDM5C	8242	broad.mit.edu	37	X	53222170	53222170	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	53222170	C	A	53222170	3	1	8	1	0	0	0	0	1	0	0	0	8142	796	28	4	122	4	KDM5C	23	53222170	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	3092649	53222170	102048390	140	495											
HUWE1	10075	broad.mit.edu	37	X	53564526	53564526	+	Missense_Mutation	SNP	T	T	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	53564526	T	G	53564526	3	3	8	1	0	0	0	0	1	0	0	0	7468	1609	56	5	1024	5	HUWE1	23	53564526	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	342356	53564526	101706034	141	496											
ZC4H2	55906	broad.mit.edu	37	X	64137703	64137703	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	64137703	G	A	64137703	3	1	8	1	0	0	0	0	1	0	0	0	17590	1174	41	2	62	2	ZC4H2	23	64137703	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	10573177	64137703	91132857	142	497											
KIF4A	24137	broad.mit.edu	37	X	69624620	69624620	+	Missense_Mutation	SNP	A	A	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	69624620	A	G	69624620	3	3	8	1	0	0	0	0	1	0	0	0	8310	304	11	3	2940	3	KIF4A	23	69624620	Missense_Mutation	SNP	A	TCGA-A3-3331-01A-01W-0886-08	5486917	69624620	85645940	143	498											
TBX22	50945	broad.mit.edu	37	X	79286340	79286340	+	Missense_Mutation	SNP	T	T	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	79286340	T	G	79286340	3	3	8	1	0	0	0	0	1	0	0	0	15670	1432	50	5	1323	5	TBX22	23	79286340	Missense_Mutation	SNP	T	TCGA-A3-3331-01A-01W-0886-08	9661720	79286340	75984220	144	499											
COL4A5	1287	broad.mit.edu	37	X	107834821	107834822	+	Frame_Shift_Ins	INS	-	-	C	rs104886321		TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	107834822	-	C	107834821	7	5	8	1	0	1	1	0	0	0	0	0	3696	1203	42	0	1452	0	COL4A5	23	107834821	Frame_Shift_Ins	INS	-	TCGA-A3-3331-01A-01W-0886-08	28548481	107834821	47435739	145	500											
COL4A5	1287	broad.mit.edu	37	X	107930823	107930823	+	Missense_Mutation	SNP	C	C	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	107930823	C	G	107930823	3	3	8	1	0	0	0	0	1	0	0	0	3696	478	17	4	4606	4	COL4A5	23	107930823	Missense_Mutation	SNP	C	TCGA-A3-3331-01A-01W-0886-08	96002	107930823	47339737	146	501											
LAMP2	3920	broad.mit.edu	37	X	119575704	119575705	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	G	119575705	-	G	119575704	7	5	8	1	0	1	1	0	0	0	0	0	8625	188	7	0	557	0	LAMP2	23	119575704	Frame_Shift_Ins	INS	-	TCGA-A3-3331-01A-01W-0886-08	11644881	119575704	35694856	147	502											
IDS	3423	broad.mit.edu	37	X	148564298	148564298	+	Silent	SNP	A	A	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	148564298	A	C	148564298	2	2	8	1	0	0	0	0	0	0	0	1	7510	1	1	5		5	IDS	23	148564298	Silent	SNP	A	TCGA-A3-3331-01A-01W-0886-08	28988594	148564298	6706262	148	503											
PASD1	139135	broad.mit.edu	37	X	150842424	150842425	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	C	150842425	-	C	150842424	7	5	8	1	0	1	1	0	0	0	0	0	11478	1190	42	0	1995	0	PASD1	23	150842424	Frame_Shift_Ins	INS	-	TCGA-A3-3331-01A-01W-0886-08	2278126	150842424	4428136	149	504											
CNGA2	1260	broad.mit.edu	37	X	150912423	150912423	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	150912423	G	A	150912423	3	1	8	1	0	0	0	0	1	0	0	0	3599	1087	38	1	1470	1	CNGA2	23	150912423	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	69999	150912423	4358137	150	505											
CNGA2	1260	broad.mit.edu	37	X	150912764	150912764	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3331-01A-01W-0886-08	TCGA-A3-3331-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c765f5-8226-4c2a-b6c5-8fe71013ea7b	3f126344-bcdc-485e-b31b-7656298aa2d6	A	150912764	G	A	150912764	3	1	8	1	0	0	0	0	1	0	0	0	3599	1145	40	1	1811	1	CNGA2	23	150912764	Missense_Mutation	SNP	G	TCGA-A3-3331-01A-01W-0886-08	341	150912764	4357796	151	506											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11177096	11177096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	T	11177096	C	T	11177096	3	4	9	1	0	0	0	0	1	0	0	0	9961	478	17	2	704	2	MTOR	1	11177096	Missense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10		11177096	238073525	1	507											
USP48	84196	broad.mit.edu;ucsc.edu	37	1	22032266	22032266	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	G	22032266	G	G	22032266	3	3	9	1	0	0	0	0	1	0	0	0	17091	623	22	4	805	4	USP48	1	22032266	Missense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10	10855170	22032266	227218355	2	508											
THEM5	284486	broad.mit.edu	37	1	151820746	151820746	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	G	151820746	G	G	151820746	3	3	9	1	0	0	0	0	1	0	0	0	15871	739	26	4	268	4	THEM5	1	151820746	Missense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10	129788480	151820746	97429875	3	509											
PLEKHA6	22874	broad.mit.edu;ucsc.edu	37	1	204236640	204236640	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	204236640	A	A	204236640	3	1	9	1	0	0	0	0	1	0	0	0	12067	508	18	4	2975	4	PLEKHA6	1	204236640	Missense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10	52415894	204236640	45013981	4	510											
FAM110C	642273	broad.mit.edu	37	2	46063	46063	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	46063	A	A	46063	3	1	9	1	0	0	0	0	1	0	0	0	5402	1783	62	5	650	5	FAM110C	2	46063	Missense_Mutation	SNP	T	TCGA-A3-3347-01A-02D-1386-10		46063	243153310	5	511											
PER2	8864	broad.mit.edu;ucsc.edu	37	2	239181739	239181739	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	T	239181739	T	T	239181739	3	4	9	1	0	0	0	0	1	0	0	0	11737	43	2	5	3301	5	PER2	2	239181739	Missense_Mutation	SNP	A	TCGA-A3-3347-01A-02D-1386-10	239135676	239181739	4017634	6	512											
ITIH4	3700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52858939	52858939	+	Silent	SNP	G	G	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	52858939	G	A	52858939	2	1	9	1	0	0	0	0	0	0	0	1	7913	1103	39	1		1	ITIH4	3	52858939	Silent	SNP	G	TCGA-A3-3347-01A-02D-1386-10		52858939	145163491	7	513											
BOC	91653	broad.mit.edu	37	3	112993348	112993348	+	Nonsense_Mutation	SNP	C	G	G	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	G	112993348	G	G	112993348	4	3	9	1	0	0	0	0	0	1	0	0	1481	838	29	4	1387	4	BOC	3	112993348	Nonsense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10	60134409	112993348	85029082	8	514											
EIF2A	83939	broad.mit.edu;ucsc.edu	37	3	150264607	150264607	+	Silent	SNP	G	C	C	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	C	150264607	C	C	150264607	2	2	9	1	0	0	0	0	0	0	0	1	4997	1074	38	4		4	EIF2A	3	150264607	Silent	SNP	G	TCGA-A3-3347-01A-02D-1386-10	37271259	150264607	47757823	9	515											
C3orf70	285382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184801259	184801259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	C	184801259	T	C	184801259	3	2	9	1	0	0	0	0	1	0	0	0	2244	1435	50	3	467	3	C3orf70	3	184801259	Missense_Mutation	SNP	T	TCGA-A3-3347-01A-02D-1386-10	34536652	184801259	13221171	10	516											
QRFPR	84109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	122250674	122250674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	C	122250674	T	C	122250674	3	2	9	1	0	0	0	0	1	0	0	0	12891	1493	52	3	208	3	QRFPR	4	122250674	Missense_Mutation	SNP	T	TCGA-A3-3347-01A-02D-1386-10		122250674	68903602	11	517											
PCDHGA1	56114	broad.mit.edu;ucsc.edu	37	5	140712672	140712672	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	C	140712672	C	C	140712672	3	2	9	1	0	0	0	0	1	0	0	0	11557	1014	35	4	2423	4	PCDHGA1	5	140712672	Missense_Mutation	SNP	G	TCGA-A3-3347-01A-02D-1386-10		140712672	40202588	12	518											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56506875	56506875	+	Missense_Mutation	SNP	C	C	T	rs183335254	by1000genomes;alternate_allele	TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	T	56506875	C	T	56506875	3	4	9	1	0	0	0	0	1	0	0	0	4785	565	20	2	20197	2	DST	6	56506875	Missense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10		56506875	114608192	13	519											
GIMAP8	155038	hgsc.bcm.edu;ucsc.edu	37	7	150174278	150174278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	150174278	G	A	150174278	3	1	9	1	0	0	0	0	1	0	0	0	6392	1203	42	2	1422	2	GIMAP8	7	150174278	Missense_Mutation	SNP	G	TCGA-A3-3347-01A-02D-1386-10		150174278	8964385	14	520											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113392679	113392679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	113392679	G	A	113392679	3	1	9	1	0	0	0	0	1	0	0	0	3948	1377	48	2	5221	2	CSMD3	8	113392679	Missense_Mutation	SNP	G	TCGA-A3-3347-01A-02D-1386-10		113392679	32971343	15	521											
FAM83H	286077	broad.mit.edu	37	8	144810219	144810219	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	T	144810219	T	T	144810219	3	4	9	1	0	0	0	0	1	0	0	0	5647	739	26	2	2131	2	FAM83H	8	144810219	Missense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10	31417540	144810219	1553803	16	522											
TLL2	7093	broad.mit.edu;ucsc.edu	37	10	98133425	98133425	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	G	98133425	G	G	98133425	3	3	9	1	0	0	0	0	1	0	0	0	15958	1580	55	5	469	5	TLL2	10	98133425	Missense_Mutation	SNP	T	TCGA-A3-3347-01A-02D-1386-10		98133425	37401322	17	523											
ABCC2	1244	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	101552068	101552068	+	Silent	SNP	A	A	G	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	G	101552068	A	G	101552068	2	3	9	1	0	0	0	0	0	0	0	1	53	175	7	3		3	ABCC2	10	101552068	Silent	SNP	A	TCGA-A3-3347-01A-02D-1386-10	3418643	101552068	33982679	18	524											
TRIM21	6737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4411235	4411235	+	Silent	SNP	G	G	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	4411235	G	A	4411235	2	1	9	1	0	0	0	0	0	0	0	1	16507	1256	44	2		2	TRIM21	11	4411235	Silent	SNP	G	TCGA-A3-3347-01A-02D-1386-10		4411235	130595281	19	525											
OR51B4	79339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5322438	5322438	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	G	5322438	C	G	5322438	3	3	9	1	0	0	0	0	1	0	0	0	11097	565	20	4	196	4	OR51B4	11	5322438	Missense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10	911203	5322438	129684078	20	526											
CCDC88B	283234	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64111336	64111336	+	Silent	SNP	C	C	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	64111336	C	A	64111336	2	1	9	1	0	0	0	0	0	0	0	1	2866	643	23	4		4	CCDC88B	11	64111336	Silent	SNP	C	TCGA-A3-3347-01A-02D-1386-10	58788898	64111336	70895180	21	527											
OR2AT4	341152	broad.mit.edu;ucsc.edu	37	11	74800063	74800063	+	Silent	SNP	G	C	C	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	C	74800063	C	C	74800063	2	2	9	1	0	0	0	0	0	0	0	1	10994	1306	46	4		4	OR2AT4	11	74800063	Silent	SNP	G	TCGA-A3-3347-01A-02D-1386-10	10688727	74800063	60206453	22	528											
DSCAML1	57453	broad.mit.edu	37	11	117299207	117299208	+	Frame_Shift_Del	DEL	CT	-	-	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	-	117299208	-	-	117299207	7	5	9	1	0	1	0	1	0	0	0	0	4771	797	28	0	166	0	DSCAML1	11	117299207	Frame_Shift_Del	DEL	CT	TCGA-A3-3347-01A-02D-1386-10	42499144	117299207	17707309	23	529											
PCNX	22990	broad.mit.edu;ucsc.edu	37	14	71462632	71462632	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	G	71462632	G	G	71462632	3	3	9	1	0	0	0	0	1	0	0	0	11598	535	19	4	2649	4	PCNX	14	71462632	Missense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10		71462632	35886908	24	530											
PAFAH1B1	5048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	2570313	2570313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	2570313	G	A	2570313	3	1	9	1	0	0	0	0	1	0	0	0	11391	1291	45	2	234	2	PAFAH1B1	17	2570313	Missense_Mutation	SNP	G	TCGA-A3-3347-01A-02D-1386-10		2570313	78624897	25	531											
DERL2	51009	hgsc.bcm.edu;ucsc.edu	37	17	5383897	5383897	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	-	5383897	A	-	5383897	7	5	9	1	0	1	0	1	0	0	0	0	4449	127	5	0	398	0	DERL2	17	5383897	Frame_Shift_Del	DEL	A	TCGA-A3-3347-01A-02D-1386-10	2813584	5383897	75811313	26	532											
MED24	9862	broad.mit.edu;ucsc.edu	37	17	38182523	38182523	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	C	38182523	C	C	38182523	3	2	9	1	0	0	0	0	1	0	0	0	9449	72	3	5	1130	5	MED24	17	38182523	Missense_Mutation	SNP	A	TCGA-A3-3347-01A-02D-1386-10	32798626	38182523	43012687	27	533											
STAT5B	6777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40371847	40371847	+	Silent	SNP	C	C	T	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	T	40371847	C	T	40371847	2	4	9	1	0	0	0	0	0	0	0	1	15281	755	27	1		1	STAT5B	17	40371847	Silent	SNP	C	TCGA-A3-3347-01A-02D-1386-10	2189324	40371847	40823363	28	534											
ST6GALNAC1	55808	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74622132	74622132	+	Silent	SNP	C	C	T	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	T	74622132	C	T	74622132	2	4	9	1	0	0	0	0	0	0	0	1	15235	506	18	2		2	ST6GALNAC1	17	74622132	Silent	SNP	C	TCGA-A3-3347-01A-02D-1386-10	34250285	74622132	6573078	29	535											
SF3A2	8175	broad.mit.edu	37	19	2245452	2245452	+	Silent	SNP	C	A	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	2245452	A	A	2245452	2	1	9	1	0	0	0	0	0	0	0	1	14160	760	27	4		4	SF3A2	19	2245452	Silent	SNP	C	TCGA-A3-3347-01A-02D-1386-10		2245452	56883531	30	536											
CHAF1A	10036	broad.mit.edu;ucsc.edu	37	19	4433326	4433326	+	Silent	SNP	C	T	T	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	T	4433326	T	T	4433326	2	4	9	1	0	0	0	0	0	0	0	1	3313	506	18	2		2	CHAF1A	19	4433326	Silent	SNP	C	TCGA-A3-3347-01A-02D-1386-10	2187874	4433326	54695657	31	537											
GRIK5	2901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42507514	42507514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	42507514	C	A	42507514	3	1	9	1	0	0	0	0	1	0	0	0	6784	508	18	4	466	4	GRIK5	19	42507514	Missense_Mutation	SNP	C	TCGA-A3-3347-01A-02D-1386-10	38074188	42507514	16621469	32	538											
CARD10	29775	broad.mit.edu;ucsc.edu	37	22	37893039	37893039	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	G	37893039	G	G	37893039	3	3	9	1	0	0	0	0	1	0	0	0	2646	217	8	3	1200	3	CARD10	22	37893039	Missense_Mutation	SNP	A	TCGA-A3-3347-01A-02D-1386-10		37893039	13411527	33	539											
PLA2G6	8398	broad.mit.edu	37	22	38516843	38516843	+	Silent	SNP	G	A	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	38516843	A	A	38516843	2	1	9	1	0	0	0	0	0	0	0	1	12015	1140	40	1		1	PLA2G6	22	38516843	Silent	SNP	G	TCGA-A3-3347-01A-02D-1386-10	623804	38516843	12787723	34	540											
MAGED1	9500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	51638670	51638670	+	Silent	SNP	G	G	A	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	A	51638670	G	A	51638670	2	1	9	1	0	0	0	0	0	0	0	1	9190	991	35	2		2	MAGED1	23	51638670	Silent	SNP	G	TCGA-A3-3347-01A-02D-1386-10		51638670	103631890	35	541											
KLF8	11279	broad.mit.edu;hgsc.bcm.edu	37	X	56295819	56295819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3347-01A-02D-1386-10	TCGA-A3-3347-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f4a6bd7-16ff-4689-b41d-c5fabb87823b	faae36b9-3b70-4f6c-bc9b-45dbf2114b52	C	56295819	G	C	56295819	3	2	9	1	0	0	0	0	1	0	0	0	8359	1290	45	4	669	4	KLF8	23	56295819	Missense_Mutation	SNP	G	TCGA-A3-3347-01A-02D-1386-10	4657149	56295819	98974741	36	542											
CYP4B1	1580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	47279221	47279221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	47279221	C	T	47279221	3	4	10	1	0	0	0	0	1	0	0	0	4187	768	27	1	581	1	CYP4B1	1	47279221	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10		47279221	201971400	1	543											
DDAH1	23576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	85817252	85817252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	C	85817252	A	C	85817252	3	2	10	1	0	0	0	0	1	0	0	0	4323	11	1	5	459	5	DDAH1	1	85817252	Missense_Mutation	SNP	A	TCGA-A3-3349-01A-01D-1251-10	38538031	85817252	163433369	2	544											
AGL	178	broad.mit.edu;ucsc.edu	37	1	100368332	100368332	+	Missense_Mutation	SNP	C	G	G	rs113994131	alternate_allele	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	G	100368332	G	G	100368332	3	3	10	1	0	0	0	0	1	0	0	0	384	876	31	4	3853	4	AGL	1	100368332	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10	14551080	100368332	148882289	3	545											
DCAF6	55827	broad.mit.edu;ucsc.edu	37	1	168034953	168034953	+	Silent	SNP	A	T	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	168034953	T	T	168034953	2	4	10	1	0	0	0	0	0	0	0	1	4276	349	13	5		5	DCAF6	1	168034953	Silent	SNP	A	TCGA-A3-3349-01A-01D-1251-10	67666621	168034953	81215668	4	546											
THADA	63892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	43801938	43801938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	C	43801938	G	C	43801938	3	2	10	1	0	0	0	0	1	0	0	0	15852	1252	44	4	4707	4	THADA	2	43801938	Missense_Mutation	SNP	G	TCGA-A3-3349-01A-01D-1251-10		43801938	199397435	5	547											
NRXN1	9378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	50723141	50723141	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	C	50723141	A	C	50723141	3	2	10	1	0	0	0	0	1	0	0	0	10672	159	6	5	1850	5	NRXN1	2	50723141	Missense_Mutation	SNP	A	TCGA-A3-3349-01A-01D-1251-10	6921203	50723141	192476232	6	548											
AFTPH	54812	hgsc.bcm.edu;ucsc.edu	37	2	64808374	64808374	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	-	64808374	G	-	64808374	7	5	10	1	0	1	0	1	0	0	0	0	364	1290	45	0	2532	0	AFTPH	2	64808374	Frame_Shift_Del	DEL	G	TCGA-A3-3349-01A-01D-1251-10	14085233	64808374	178390999	7	549											
ARPC2	10109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219093573	219093573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	219093573	G	T	219093573	3	4	10	1	0	0	0	0	1	0	0	0	971	1014	35	4	232	4	ARPC2	2	219093573	Missense_Mutation	SNP	G	TCGA-A3-3349-01A-01D-1251-10	154285199	219093573	24105800	8	550											
COL6A3	1293	broad.mit.edu	37	2	238280926	238280926	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	238280926	T	T	238280926	3	4	10	1	0	0	0	0	1	0	0	0	3703	623	22	2	5990	2	COL6A3	2	238280926	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10	19187353	238280926	4918447	9	551											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191540	10191540	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	-	10191540	T	-	10191540	7	5	10	1	0	1	0	1	0	0	0	0	17174	1580	55	0	543	0	VHL	3	10191540	Frame_Shift_Del	DEL	T	TCGA-A3-3349-01A-01D-1251-10		10191540	187830890	10	552											
GALNTL2	117248	broad.mit.edu;ucsc.edu	37	3	16237362	16237362	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	G	16237362	G	G	16237362	3	3	10	1	0	0	0	0	1	0	0	0	6229	159	6	3	641	3	GALNTL2	3	16237362	Missense_Mutation	SNP	A	TCGA-A3-3349-01A-01D-1251-10	6045822	16237362	181785068	11	553											
PODXL2	50512	hgsc.bcm.edu;ucsc.edu	37	3	127390442	127390442	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	-	127390442	A	-	127390442	7	5	10	1	0	1	0	1	0	0	0	0	12188	131	5	0	1617	0	PODXL2	3	127390442	Frame_Shift_Del	DEL	A	TCGA-A3-3349-01A-01D-1251-10	111153080	127390442	70631988	12	554											
IQCG	84223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	197652965	197652965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	A	197652965	C	A	197652965	3	1	10	1	0	0	0	0	1	0	0	0	7817	855	30	4	699	4	IQCG	3	197652965	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10	70262523	197652965	369465	13	555											
TEC	100124696	hgsc.bcm.edu;ucsc.edu	37	4	48147535	48147535	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	-	48147535	A	-	48147535	7	5	10	1	0	1	0	1	0	0	0	0	15754	127	5	0	776	0	TEC	4	48147535	Frame_Shift_Del	DEL	A	TCGA-A3-3349-01A-01D-1251-10		48147535	143006741	14	556											
ADAMTS12	81792	broad.mit.edu;ucsc.edu	37	5	33683970	33683970	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	33683970	T	T	33683970	3	4	10	1	0	0	0	0	1	0	0	0	257	826	29	2	4043	2	ADAMTS12	5	33683970	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10		33683970	147231290	15	557											
MSX2	4488	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	174156377	174156377	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	174156377	A	T	174156377	4	4	10	1	0	0	0	0	0	1	0	0	9903	64	3	5	601	5	MSX2	5	174156377	Nonsense_Mutation	SNP	A	TCGA-A3-3349-01A-01D-1251-10	140472407	174156377	6758883	16	558											
C6orf97	0	broad.mit.edu;hgsc.bcm.edu	37	6	151894314	151894314	+	Silent	SNP	G	G	A	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	A	151894314	G	A	151894314	2	1	10	1	0	0	0	0	0	0	0	1	2376	1306	46	2		2	C6orf97	6	151894314	Silent	SNP	G	TCGA-A3-3349-01A-01D-1251-10		151894314	19220753	17	559											
PMS2	5395	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	6042192	6042192	+	Silent	SNP	A	A	G	rs35650314		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	G	6042192	A	G	6042192	2	3	10	1	0	0	0	0	0	0	0	1	12150	358	13	3		3	PMS2	7	6042192	Silent	SNP	A	TCGA-A3-3349-01A-01D-1251-10		6042192	153096471	18	560											
CHRNA2	1135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	27321118	27321118	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	G	27321118	C	G	27321118	3	3	10	1	0	0	0	0	1	0	0	0	3385	710	25	4	755	4	CHRNA2	8	27321118	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10		27321118	119042904	19	561											
CRISPLD1	83690	broad.mit.edu;ucsc.edu	37	8	75927084	75927084	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	75927084	T	T	75927084	3	4	10	1	0	0	0	0	1	0	0	0	3884	759	27	1	682	1	CRISPLD1	8	75927084	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10	48605966	75927084	70436938	20	562											
RGS3	5998	broad.mit.edu;ucsc.edu	37	9	116267783	116267783	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	C	116267783	C	C	116267783	3	2	10	1	0	0	0	0	1	0	0	0	13319	1058	37	4	1142	4	RGS3	9	116267783	Missense_Mutation	SNP	G	TCGA-A3-3349-01A-01D-1251-10		116267783	24945648	21	563											
ACSL5	51703	hgsc.bcm.edu;ucsc.edu	37	10	114164332	114164332	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	114164332	A	T	114164332	3	4	10	1	0	0	0	0	1	0	0	0	180	202	7	5	511	5	ACSL5	10	114164332	Missense_Mutation	SNP	A	TCGA-A3-3349-01A-01D-1251-10		114164332	21370415	22	564											
TRIM21	6737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4411299	4411299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	4411299	C	T	4411299	3	4	10	1	0	0	0	0	1	0	0	0	16507	478	17	2	1110	2	TRIM21	11	4411299	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10		4411299	130595217	23	565											
ABTB2	25841	hgsc.bcm.edu	37	11	34174107	34174107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	34174107	G	T	34174107	3	4	10	1	0	0	0	0	1	0	0	0	103	991	35	4	176	4	ABTB2	11	34174107	Missense_Mutation	SNP	G	TCGA-A3-3349-01A-01D-1251-10	29762808	34174107	100832409	24	566											
BEST1	7439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61730491	61730491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	C	61730491	T	C	61730491	3	2	10	1	0	0	0	0	1	0	0	0	1404	1522	53	3	1899	3	BEST1	11	61730491	Missense_Mutation	SNP	T	TCGA-A3-3349-01A-01D-1251-10	27556384	61730491	73276025	25	567											
SYT12	91683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66807536	66807536	+	Silent	SNP	G	G	A	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	A	66807536	G	A	66807536	2	1	10	1	0	0	0	0	0	0	0	1	15480	1020	36	2		2	SYT12	11	66807536	Silent	SNP	G	TCGA-A3-3349-01A-01D-1251-10	5077045	66807536	68198980	26	568											
ACAD10	80724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	112193484	112193484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	A	112193484	G	A	112193484	3	1	10	1	0	0	0	0	1	0	0	0	108	1174	41	2	3145	2	ACAD10	12	112193484	Missense_Mutation	SNP	G	TCGA-A3-3349-01A-01D-1251-10		112193484	21658411	27	569											
C14orf174	0	broad.mit.edu	37	14	77844367	77844367	+	Silent	SNP	A	G	G	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	G	77844367	G	G	77844367	2	3	10	1	0	0	0	0	0	0	0	1	1761	69	3	3		3	C14orf174	14	77844367	Silent	SNP	A	TCGA-A3-3349-01A-01D-1251-10		77844367	29505173	28	570											
ZFHX3	463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	72829790	72829790	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	G	72829790	T	G	72829790	3	3	10	1	0	0	0	0	1	0	0	0	17646	1493	52	5	4328	5	ZFHX3	16	72829790	Missense_Mutation	SNP	T	TCGA-A3-3349-01A-01D-1251-10		72829790	17524963	29	571											
ERBB2	2064	broad.mit.edu	37	17	37883729	37883729	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	G	37883729	G	G	37883729	3	3	10	1	0	0	0	0	1	0	0	0	5208	304	11	3	3443	3	ERBB2	17	37883729	Missense_Mutation	SNP	A	TCGA-A3-3349-01A-01D-1251-10		37883729	43311481	30	572											
SCPEP1	59342	hgsc.bcm.edu;ucsc.edu	37	17	55072362	55072362	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	-	55072362	C	-	55072362	7	5	10	1	0	1	0	1	0	0	0	0	13948	507	18	0	666	0	SCPEP1	17	55072362	Frame_Shift_Del	DEL	C	TCGA-A3-3349-01A-01D-1251-10	17188633	55072362	26122848	31	573											
BCAS3	54828	broad.mit.edu;ucsc.edu	37	17	59155722	59155722	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	G	59155722	G	G	59155722	3	3	10	1	0	0	0	0	1	0	0	0	1352	217	8	3	2286	3	BCAS3	17	59155722	Missense_Mutation	SNP	A	TCGA-A3-3349-01A-01D-1251-10	4083360	59155722	22039488	32	574											
USP36	57602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76795062	76795062	+	Silent	SNP	A	A	C	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	C	76795062	A	C	76795062	2	2	10	1	0	0	0	0	0	0	0	1	17079	407	15	5		5	USP36	17	76795062	Silent	SNP	A	TCGA-A3-3349-01A-01D-1251-10	17639340	76795062	4400148	33	575											
ATP5A1	498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	43668204	43668204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	A	43668204	C	A	43668204	3	1	10	1	0	0	0	0	1	0	0	0	1147	826	29	4	1019	4	ATP5A1	18	43668204	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10		43668204	34409044	34	576											
LRRC8E	80131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7964495	7964495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	C	7964495	T	C	7964495	3	2	10	1	0	0	0	0	1	0	0	0	9032	1783	62	3	1094	3	LRRC8E	19	7964495	Missense_Mutation	SNP	T	TCGA-A3-3349-01A-01D-1251-10		7964495	51164488	35	577											
RGL3	57139	broad.mit.edu	37	19	11529441	11529441	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	-	11529441	-	-	11529441	7	5	10	1	0	1	0	1	0	0	0	0	13291	507	18	0	2169	0	RGL3	19	11529441	Frame_Shift_Del	DEL	C	TCGA-A3-3349-01A-01D-1251-10	3564946	11529441	47599542	36	578											
EPS8L1	54869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55597327	55597327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	55597327	C	T	55597327	3	4	10	1	0	0	0	0	1	0	0	0	5197	759	27	1	1610	1	EPS8L1	19	55597327	Missense_Mutation	SNP	C	TCGA-A3-3349-01A-01D-1251-10	44067886	55597327	3531656	37	579											
SIRPG	55423	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	1616066	1616066	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	1616066	A	T	1616066	3	4	10	1	0	0	0	0	1	0	0	0	14349	188	7	5	243	5	SIRPG	20	1616066	Missense_Mutation	SNP	A	TCGA-A3-3349-01A-01D-1251-10		1616066	61409454	38	580											
RGL4	266747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24034361	24034361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2b257f6-9cb5-4598-89c7-f0b55e24dbb3	aa4a92b2-92ab-48d5-a8e5-9e84319e1799	T	24034361	G	T	24034361	3	4	10	1	0	0	0	0	1	0	0	0	13292	991	35	4	146	4	RGL4	22	24034361	Missense_Mutation	SNP	G	TCGA-A3-3349-01A-01D-1251-10		24034361	27270205	39	581											
AK2	204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33487201	33487201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	33487201	G	T	33487201	3	4	11	1	0	0	0	0	1	0	0	0	440	1319	46	4	421	4	AK2	1	33487201	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08		33487201	215763420	1	582											
TMEM48	55706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54262374	54262374	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	54262374	A	C	54262374	3	2	11	1	0	0	0	0	1	0	0	0	16184	446	16	5	476	5	TMEM48	1	54262374	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	20775173	54262374	194988247	2	583											
C1orf56	54964	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151021076	151021076	+	Silent	SNP	A	A	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	151021076	A	G	151021076	2	3	11	1	0	0	0	0	0	0	0	1	2050	40	2	3		3	C1orf56	1	151021076	Silent	SNP	A	TCGA-A3-3357-01A-02D-1421-08	96758702	151021076	98229545	3	584											
FCRL3	115352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	157650775	157650775	+	Silent	SNP	G	G	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	157650775	G	A	157650775	2	1	11	1	0	0	0	0	0	0	0	1	5803	1310	46	2		2	FCRL3	1	157650775	Silent	SNP	G	TCGA-A3-3357-01A-02D-1421-08	6629699	157650775	91599846	4	585											
SELL	6402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169677787	169677787	+	Silent	SNP	A	A	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	169677787	A	T	169677787	2	4	11	1	0	0	0	0	0	0	0	1	14029	59	3	5		5	SELL	1	169677787	Silent	SNP	A	TCGA-A3-3357-01A-02D-1421-08	12027012	169677787	79572834	5	586											
TNR	7143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	175299227	175299227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	175299227	C	A	175299227	3	1	11	1	0	0	0	0	1	0	0	0	16350	797	28	4	312	4	TNR	1	175299227	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	5621440	175299227	73951394	6	587											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186064396	186064396	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	186064396	C	G	186064396	4	3	11	1	0	0	0	0	0	1	0	0	7227	838	29	4	10586	4	HMCN1	1	186064396	Nonsense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	10765169	186064396	63186225	7	588											
TAF1A	9015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	222743918	222743918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	222743918	T	C	222743918	3	2	11	1	0	0	0	0	1	0	0	0	15531	1493	52	3	682	3	TAF1A	1	222743918	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	36679522	222743918	26506703	8	589											
ZNF496	84838	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247463962	247463962	+	Silent	SNP	G	G	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	247463962	G	C	247463962	2	2	11	1	0	0	0	0	0	0	0	1	17957	1306	46	4		4	ZNF496	1	247463962	Silent	SNP	G	TCGA-A3-3357-01A-02D-1421-08	24720044	247463962	1786659	9	590											
GCC2	9648	hgsc.bcm.edu;ucsc.edu	37	2	109104197	109104197	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	-	109104197	G	-	109104197	7	5	11	1	0	1	0	1	0	0	0	0	6293	1029	36	0	4039	0	GCC2	2	109104197	Frame_Shift_Del	DEL	G	TCGA-A3-3357-01A-02D-1421-08		109104197	134095176	10	591											
IFIH1	64135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	163144684	163144684	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	163144684	T	G	163144684	3	3	11	1	0	0	0	0	1	0	0	0	7527	1606	56	5	2069	5	IFIH1	2	163144684	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	54040487	163144684	80054689	11	592											
XIRP2	129446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	168104032	168104032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	168104032	A	G	168104032	3	3	11	1	0	0	0	0	1	0	0	0	17442	412	15	3	6160	3	XIRP2	2	168104032	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	4959348	168104032	75095341	12	593											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179466064	179466064	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	179466064	G	A	179466064	4	1	11	1	0	0	0	0	0	1	0	0	16747	1095	38	1	52337	1	TTN	2	179466064	Nonsense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	11362032	179466064	63733309	13	594											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179571302	179571302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	179571302	C	A	179571302	3	1	11	1	0	0	0	0	1	0	0	0	16747	594	21	4	75274	4	TTN	2	179571302	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	105238	179571302	63628071	14	595											
OBFC2A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	192546733	192546733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	192546733	A	C	192546733	3	2	11	1	0	0	0	0	1	0	0	0	10815	15	1	5	302	5	OBFC2A	2	192546733	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	12975431	192546733	50652640	15	596											
COL4A4	1286	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	227919340	227919340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	227919340	G	T	227919340	3	4	11	1	0	0	0	0	1	0	0	0	3695	1174	41	4	2314	4	COL4A4	2	227919340	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	35372607	227919340	15280033	16	597											
GIGYF2	26058	hgsc.bcm.edu;ucsc.edu	37	2	233708765	233708767	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	-	233708767	CAG	-	233708765	7	5	11	1	0	1	0	1	0	0	0	0	6385	595	21	0	3055	0	GIGYF2	2	233708765	In_Frame_Del	DEL	CAG	TCGA-A3-3357-01A-02D-1421-08	5789425	233708765	9490608	17	598											
RFTN1	23180	broad.mit.edu;ucsc.edu	37	3	16535237	16535237	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	16535237	A	A	16535237	3	1	11	1	0	0	0	0	1	0	0	0	13271	565	20	4	1632	4	RFTN1	3	16535237	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08		16535237	181487193	18	599											
ARHGAP31	57514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	119099820	119099820	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	119099820	C	G	119099820	3	3	11	1	0	0	0	0	1	0	0	0	880	855	30	4	432	4	ARHGAP31	3	119099820	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	102564583	119099820	78922610	19	600											
COPG	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128986841	128986841	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	128986841	G	C	128986841	3	2	11	1	0	0	0	0	1	0	0	0	3733	1175	41	4	1668	4	COPG	3	128986841	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	9887021	128986841	69035589	20	601											
COL6A5	256076	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130162331	130162331	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	130162331	C	G	130162331	3	3	11	1	0	0	0	0	1	0	0	0	3704	827	29	4	6637	4	COL6A5	3	130162331	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	1175490	130162331	67860099	21	602											
TBL1XR1	79718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	176768295	176768295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	176768295	C	A	176768295	3	1	11	1	0	0	0	0	1	0	0	0	15652	856	30	4	1057	4	TBL1XR1	3	176768295	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	46605964	176768295	21254135	22	603											
PIK3CA	5290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	178952090	178952090	+	Missense_Mutation	SNP	G	G	C	rs121913277	bycluster	TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	178952090	G	C	178952090	3	2	11	1	0	0	0	0	1	0	0	0	11920	1348	47	4	3223	4	PIK3CA	3	178952090	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	2183795	178952090	19070340	23	604											
EIF4A2	1974	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186505363	186505363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	186505363	C	T	186505363	3	4	11	1	0	0	0	0	1	0	0	0	5027	565	20	2	1023	2	EIF4A2	3	186505363	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	7553273	186505363	11517067	24	605											
OPA1	4976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	193366636	193366636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	193366636	T	C	193366636	3	2	11	1	0	0	0	0	1	0	0	0	10878	1580	55	3	2070	3	OPA1	3	193366636	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	6861273	193366636	4655794	25	606											
RNF4	6047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	2515531	2515531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	2515531	C	A	2515531	3	1	11	1	0	0	0	0	1	0	0	0	13505	506	18	4	584	4	RNF4	4	2515531	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08		2515531	188638745	26	607											
SEPSECS	51091	broad.mit.edu	37	4	25160704	25160704	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	25160704	C	C	25160704	3	2	11	1	0	0	0	0	1	0	0	0	14071	1435	50	3	1405	3	SEPSECS	4	25160704	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	22645173	25160704	165993572	27	608											
RFC1	5981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	39324978	39324978	+	Silent	SNP	T	T	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	39324978	T	C	39324978	2	2	11	1	0	0	0	0	0	0	0	1	13257	1606	56	3		3	RFC1	4	39324978	Silent	SNP	T	TCGA-A3-3357-01A-02D-1421-08	14164274	39324978	151829298	28	609											
FIP1L1	81608	hgsc.bcm.edu;ucsc.edu	37	4	54256754	54256755	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	AG	54256755	-	AG	54256754	7	5	11	1	0	1	1	0	0	0	0	0	5903	1638	57	0	490	0	FIP1L1	4	54256754	Frame_Shift_Ins	INS	-	TCGA-A3-3357-01A-02D-1421-08	14931776	54256754	136897522	29	610											
CEP135	9662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	56890684	56890684	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	56890684	A	C	56890684	3	2	11	1	0	0	0	0	1	0	0	0	3249	304	11	5	3432	5	CEP135	4	56890684	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	2633930	56890684	134263592	30	611											
HELQ	113510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	84374451	84374451	+	Silent	SNP	A	A	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	84374451	A	C	84374451	2	2	11	1	0	0	0	0	0	0	0	1	7054	59	3	5		5	HELQ	4	84374451	Silent	SNP	A	TCGA-A3-3357-01A-02D-1421-08	27483767	84374451	106779825	31	612											
ADAMTS12	81792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33751536	33751536	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	-	33751536	T	-	33751536	7	5	11	1	0	1	0	1	0	0	0	0	257	1725	60	0	4265	0	ADAMTS12	5	33751536	Frame_Shift_Del	DEL	T	TCGA-A3-3357-01A-02D-1421-08		33751536	147163724	32	613											
GCNT4	51301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	74325838	74325838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	74325838	T	G	74325838	3	3	11	1	0	0	0	0	1	0	0	0	6310	1763	61	5	1340	5	GCNT4	5	74325838	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	40574302	74325838	106589422	33	614											
FCHSD1	89848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141025713	141025713	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	141025713	C	A	141025713	4	1	11	1	0	0	0	0	0	1	0	0	5796	864	30	4	1018	4	FCHSD1	5	141025713	Nonsense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	66699875	141025713	39889547	34	615											
PCDH1	5097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141243421	141243421	+	Silent	SNP	G	G	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	141243421	G	A	141243421	2	1	11	1	0	0	0	0	0	0	0	1	11513	1161	41	2		2	PCDH1	5	141243421	Silent	SNP	G	TCGA-A3-3357-01A-02D-1421-08	217708	141243421	39671839	35	616											
DPYSL3	1809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	146792202	146792202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	146792202	A	G	146792202	3	3	11	1	0	0	0	0	1	0	0	0	4750	43	2	3	1158	3	DPYSL3	5	146792202	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	5548781	146792202	34123058	36	617											
SH3TC2	79628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	148406556	148406556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	148406556	C	G	148406556	3	3	11	1	0	0	0	0	1	0	0	0	14275	680	24	4	1155	4	SH3TC2	5	148406556	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	1614354	148406556	32508704	37	618											
FBXW11	23291	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	171299957	171299957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	171299957	A	G	171299957	3	3	11	1	0	0	0	0	1	0	0	0	5771	304	11	3	448	3	FBXW11	5	171299957	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	22893401	171299957	9615303	38	619											
KIAA0319	9856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	24547467	24547467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	24547467	C	G	24547467	3	3	11	1	0	0	0	0	1	0	0	0	8175	681	24	4	77	4	KIAA0319	6	24547467	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08		24547467	146567600	39	620											
COL9A1	1297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	71004163	71004163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	71004163	C	T	71004163	3	4	11	1	0	0	0	0	1	0	0	0	3709	855	30	2	2574	2	COL9A1	6	71004163	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	46456696	71004163	100110904	40	621											
ZUFSP	221302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	116987929	116987929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	116987929	T	G	116987929	3	3	11	1	0	0	0	0	1	0	0	0	18258	1850	64	5	1345	5	ZUFSP	6	116987929	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	45983766	116987929	54127138	41	622											
FOXK1	221937	broad.mit.edu;hgsc.bcm.edu	37	7	4794095	4794095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	4794095	C	T	4794095	3	4	11	1	0	0	0	0	1	0	0	0	6021	623	22	2	762	2	FOXK1	7	4794095	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08		4794095	154344568	42	623											
SP4	6671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	21469100	21469100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	21469100	C	T	21469100	3	4	11	1	0	0	0	0	1	0	0	0	14979	739	26	2	327	2	SP4	7	21469100	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	16675005	21469100	137669563	43	624											
TAX1BP1	8887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	27868314	27868314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	27868314	T	A	27868314	3	1	11	1	0	0	0	0	1	0	0	0	15606	1493	52	5	2298	5	TAX1BP1	7	27868314	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	6399214	27868314	131270349	44	625											
CLIP2	7461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	73790732	73790732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	73790732	G	T	73790732	3	4	11	1	0	0	0	0	1	0	0	0	3535	1310	46	4	2035	4	CLIP2	7	73790732	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	45922418	73790732	85347931	45	626											
KRIT1	889	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	91842561	91842561	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	91842561	A	T	91842561	3	4	11	1	0	0	0	0	1	0	0	0	8452	159	6	5	249	5	KRIT1	7	91842561	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	18051829	91842561	67296102	46	627											
WASL	8976	broad.mit.edu;ucsc.edu	37	7	123329154	123329154	+	Silent	SNP	T	C	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	123329154	C	C	123329154	2	2	11	1	0	0	0	0	0	0	0	1	17268	1770	62	3		3	WASL	7	123329154	Silent	SNP	T	TCGA-A3-3357-01A-02D-1421-08	31486593	123329154	35809509	47	628											
EPHA1	2041	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	143096499	143096499	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	-	143096499	A	-	143096499	7	5	11	1	0	1	0	1	0	0	0	0	5167	407	15	0	2143	0	EPHA1	7	143096499	Frame_Shift_Del	DEL	A	TCGA-A3-3357-01A-02D-1421-08	19767345	143096499	16042164	48	629											
WHSC1L1	54904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38189086	38189086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	38189086	C	A	38189086	3	1	11	1	0	0	0	0	1	0	0	0	17375	478	17	4	3552	4	WHSC1L1	8	38189086	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08		38189086	108174936	49	630											
FRMD3	257019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	85950490	85950490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	85950490	G	T	85950490	3	4	11	1	0	0	0	0	1	0	0	0	6057	1165	41	4	1292	4	FRMD3	9	85950490	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08		85950490	55262941	50	631											
DAPK1	1612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	90255297	90255297	+	Silent	SNP	T	T	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	90255297	T	C	90255297	2	2	11	1	0	0	0	0	0	0	0	1	4237	1461	51	3		3	DAPK1	9	90255297	Silent	SNP	T	TCGA-A3-3357-01A-02D-1421-08	4304807	90255297	50958134	51	632											
ODF2	4957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131256864	131256864	+	Silent	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	131256864	C	T	131256864	2	4	11	1	0	0	0	0	0	0	0	1	10834	796	28	2		2	ODF2	9	131256864	Silent	SNP	C	TCGA-A3-3357-01A-02D-1421-08	41001567	131256864	9956567	52	633											
NEBL	10529	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	21076186	21076186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	21076186	T	C	21076186	3	2	11	1	0	0	0	0	1	0	0	0	10310	1638	57	3	239	3	NEBL	10	21076186	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08		21076186	114458561	53	634											
ERCC6	2074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	50678573	50678573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	50678573	C	T	50678573	3	4	11	1	0	0	0	0	1	0	0	0	5219	835	29	2	1064	2	ERCC6	10	50678573	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	29602387	50678573	84856174	54	635											
JMJD1C	221037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	64954117	64954117	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	64954117	C	G	64954117	3	3	11	1	0	0	0	0	1	0	0	0	7957	595	21	4	2011	4	JMJD1C	10	64954117	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	14275544	64954117	70580630	55	636											
OR2AG1	144125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6806547	6806547	+	Silent	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	6806547	C	T	6806547	2	4	11	1	0	0	0	0	0	0	0	1	10991	668	24	2		2	OR2AG1	11	6806547	Silent	SNP	C	TCGA-A3-3357-01A-02D-1421-08		6806547	128199969	56	637											
CCDC73	493860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32657351	32657351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	32657351	T	C	32657351	3	2	11	1	0	0	0	0	1	0	0	0	2848	1493	52	3	2183	3	CCDC73	11	32657351	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	25850804	32657351	102349165	57	638											
SLC29A2	3177	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66136951	66136951	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	66136951	C	G	66136951	3	3	11	1	0	0	0	0	1	0	0	0	14548	797	28	4	1246	4	SLC29A2	11	66136951	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	33479600	66136951	68869565	58	639											
IL18BP	10068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	71711432	71711432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	71711432	C	T	71711432	3	4	11	1	0	0	0	0	1	0	0	0	7653	594	21	2	70	2	IL18BP	11	71711432	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	5574481	71711432	63295084	59	640											
FAM55B	0	broad.mit.edu;ucsc.edu	37	11	114568953	114568953	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	114568953	T	T	114568953	3	4	11	1	0	0	0	0	1	0	0	0	5592	159	6	5	329	5	FAM55B	11	114568953	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	42857521	114568953	20437563	60	641											
C3AR1	719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	8212018	8212018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	8212018	T	A	8212018	3	1	11	1	0	0	0	0	1	0	0	0	2207	1406	49	5	688	5	C3AR1	12	8212018	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08		8212018	125639877	61	642											
SYT10	341359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	33579108	33579108	+	Silent	SNP	C	C	T	rs111713819		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	33579108	C	T	33579108	2	4	11	1	0	0	0	0	0	0	0	1	15478	697	25	2		2	SYT10	12	33579108	Silent	SNP	C	TCGA-A3-3357-01A-02D-1421-08	25367090	33579108	100272787	62	643											
POC1B	282809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	89885862	89885862	+	Silent	SNP	A	A	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	89885862	A	G	89885862	2	3	11	1	0	0	0	0	0	0	0	1	12183	446	16	3		3	POC1B	12	89885862	Silent	SNP	A	TCGA-A3-3357-01A-02D-1421-08	56306754	89885862	43966033	63	644											
C12orf48	0	hgsc.bcm.edu	37	12	102559621	102559621	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	-	102559621	G	-	102559621	7	5	11	1	0	1	0	1	0	0	0	0	1694	1290	45	0	552	0	C12orf48	12	102559621	Frame_Shift_Del	DEL	G	TCGA-A3-3357-01A-02D-1421-08	12673759	102559621	31292274	64	645											
ACACB	32	broad.mit.edu;hgsc.bcm.edu	37	12	109660697	109660697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	109660697	T	C	109660697	3	2	11	1	0	0	0	0	1	0	0	0	107	1725	60	3	3870	3	ACACB	12	109660697	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	7101076	109660697	24191198	65	646											
UBE3B	89910	broad.mit.edu;hgsc.bcm.edu	37	12	109935725	109935725	+	Silent	SNP	T	T	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	109935725	T	C	109935725	2	2	11	1	0	0	0	0	0	0	0	1	16892	1567	55	3		3	UBE3B	12	109935725	Silent	SNP	T	TCGA-A3-3357-01A-02D-1421-08	275028	109935725	23916170	66	647											
DCT	1638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	95092274	95092274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	95092274	G	C	95092274	3	2	11	1	0	0	0	0	1	0	0	0	4306	1020	36	4	125	4	DCT	13	95092274	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08		95092274	20077604	67	648											
CCNB1IP1	57820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	20779855	20779855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	20779855	C	T	20779855	3	4	11	1	0	0	0	0	1	0	0	0	2914	913	32	2	149	2	CCNB1IP1	14	20779855	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08		20779855	86569685	68	649											
PCNX	22990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	71479737	71479737	+	Silent	SNP	G	G	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	71479737	G	A	71479737	2	1	11	1	0	0	0	0	0	0	0	1	11598	1281	45	2		2	PCNX	14	71479737	Silent	SNP	G	TCGA-A3-3357-01A-02D-1421-08	50699882	71479737	35869803	69	650											
RBM25	58517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	73570036	73570036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	73570036	G	C	73570036	3	2	11	1	0	0	0	0	1	0	0	0	13138	1058	37	4	1038	4	RBM25	14	73570036	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	2090299	73570036	33779504	70	651											
FLRT2	23768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	86088731	86088731	+	Silent	SNP	G	G	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	86088731	G	T	86088731	2	4	11	1	0	0	0	0	0	0	0	1	5946	1277	45	4		4	FLRT2	14	86088731	Silent	SNP	G	TCGA-A3-3357-01A-02D-1421-08	12518695	86088731	21260809	71	652											
RIN3	79890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	93118453	93118453	+	Silent	SNP	C	C	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	93118453	C	A	93118453	2	1	11	1	0	0	0	0	0	0	0	1	13386	610	22	4		4	RIN3	14	93118453	Silent	SNP	C	TCGA-A3-3357-01A-02D-1421-08	7029722	93118453	14231087	72	653											
ATP8B4	79895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	50336887	50336887	+	Silent	SNP	T	T	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	50336887	T	A	50336887	2	1	11	1	0	0	0	0	0	0	0	1	1197	1741	61	5		5	ATP8B4	15	50336887	Silent	SNP	T	TCGA-A3-3357-01A-02D-1421-08		50336887	52194505	73	654											
HERC1	8925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63950916	63950916	+	Silent	SNP	A	A	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	63950916	A	T	63950916	2	4	11	1	0	0	0	0	0	0	0	1	7064	57	2	5		5	HERC1	15	63950916	Silent	SNP	A	TCGA-A3-3357-01A-02D-1421-08	13614029	63950916	38580476	74	655											
IREB2	3658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	78765670	78765670	+	Missense_Mutation	SNP	G	G	T	rs149685388	alternate_allele	TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	78765670	G	T	78765670	3	4	11	1	0	0	0	0	1	0	0	0	7833	1348	47	4	1000	4	IREB2	15	78765670	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	14814754	78765670	23765722	75	656											
MYH11	4629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15854414	15854414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	15854414	C	A	15854414	3	1	11	1	0	0	0	0	1	0	0	0	10038	797	28	4	4846	4	MYH11	16	15854414	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08		15854414	74500339	76	657											
MYLK3	91807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	46743538	46743538	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	46743538	A	T	46743538	3	4	11	1	0	0	0	0	1	0	0	0	10065	446	16	5	154	5	MYLK3	16	46743538	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	30889124	46743538	43611215	77	658											
RPGRIP1L	23322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	53692370	53692370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	53692370	C	G	53692370	3	3	11	1	0	0	0	0	1	0	0	0	13563	826	29	4	2654	4	RPGRIP1L	16	53692370	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	6948832	53692370	36662383	78	659											
FBXO31	79791	broad.mit.edu;hgsc.bcm.edu	37	16	87394002	87394002	+	RNA	SNP	A	A	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	87394002	A	T	87394002	1	4	11	0	1	0	0	0	0	0	0	0	5748	87	3	5		5	FBXO31	16	87394002	RNA	SNP	A	TCGA-A3-3357-01A-02D-1421-08	33701632	87394002	2960751	79	660											
C17orf68	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8141397	8141397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	8141397	G	A	8141397	3	1	11	1	0	0	0	0	1	0	0	0	1878	1000	35	2	3134	2	C17orf68	17	8141397	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08		8141397	73053813	80	661											
NCOR1	9611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	15961009	15961009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	15961009	G	T	15961009	3	4	11	1	0	0	0	0	1	0	0	0	10242	1328	46	4	1139	4	NCOR1	17	15961009	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	7819612	15961009	65234201	81	662											
SLFN11	91607	broad.mit.edu;hgsc.bcm.edu	37	17	33689790	33689790	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	33689790	T	G	33689790	3	3	11	1	0	0	0	0	1	0	0	0	14746	1841	64	5	1684	5	SLFN11	17	33689790	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	17728781	33689790	47505420	82	663											
PLXDC1	57125	broad.mit.edu	37	17	37265509	37265509	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	37265509	A	A	37265509	4	1	11	1	0	0	0	0	0	1	0	0	12124	1328	46	2	1159	2	PLXDC1	17	37265509	Nonsense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	3575719	37265509	43929701	83	664											
TUBG1	7283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40764111	40764111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	40764111	G	A	40764111	3	1	11	1	0	0	0	0	1	0	0	0	16776	1174	41	2	363	2	TUBG1	17	40764111	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	3498602	40764111	40431099	84	665											
IMP5	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	43923235	43923235	+	Silent	SNP	G	G	A	rs140813443	bycluster;by1000genomes	TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	43923235	G	A	43923235	2	1	11	1	0	0	0	0	0	0	0	1	7728	1074	38	1		1	IMP5	17	43923235	Silent	SNP	G	TCGA-A3-3357-01A-02D-1421-08	3159124	43923235	37271975	85	666											
PAF1	54623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39880356	39880356	+	Silent	SNP	A	A	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	39880356	A	G	39880356	2	3	11	1	0	0	0	0	0	0	0	1	11390	214	8	3		3	PAF1	19	39880356	Silent	SNP	A	TCGA-A3-3357-01A-02D-1421-08		39880356	19248627	86	667											
ZNF284	342909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44589959	44589959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	44589959	G	A	44589959	3	1	11	1	0	0	0	0	1	0	0	0	17833	1291	45	2	342	2	ZNF284	19	44589959	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	4709603	44589959	14539024	87	668											
SPHK2	56848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49129392	49129392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	49129392	C	T	49129392	3	4	11	1	0	0	0	0	1	0	0	0	15059	739	26	2	290	2	SPHK2	19	49129392	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	4539433	49129392	9999591	88	669											
SYT3	84258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51140596	51140596	+	Silent	SNP	G	G	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	51140596	G	T	51140596	2	4	11	1	0	0	0	0	0	0	0	1	15487	1124	39	4		4	SYT3	19	51140596	Silent	SNP	G	TCGA-A3-3357-01A-02D-1421-08	2011204	51140596	7988387	89	670											
ZNF610	162963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52869689	52869689	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	A	52869689	T	A	52869689	3	1	11	1	0	0	0	0	1	0	0	0	18048	1841	64	5	1072	5	ZNF610	19	52869689	Missense_Mutation	SNP	T	TCGA-A3-3357-01A-02D-1421-08	1729093	52869689	6259294	90	671											
SYT5	6861	broad.mit.edu	37	19	55686593	55686593	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	55686593	T	T	55686593	3	4	11	1	0	0	0	0	1	0	0	0	15489	991	35	4	521	4	SYT5	19	55686593	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	2816904	55686593	3442390	91	672											
C20orf141	128653	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2795845	2795845	+	Silent	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	2795845	C	T	2795845	2	4	11	1	0	0	0	0	0	0	0	1	2091	805	28	2		2	C20orf141	20	2795845	Silent	SNP	C	TCGA-A3-3357-01A-02D-1421-08		2795845	60229675	92	673											
KIF16B	55614	broad.mit.edu;hgsc.bcm.edu	37	20	16316573	16316573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	16316573	C	T	16316573	3	4	11	1	0	0	0	0	1	0	0	0	8285	922	32	2	256	2	KIF16B	20	16316573	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08	13520728	16316573	46708947	93	674	10	2									
KIF16B	55614	broad.mit.edu;hgsc.bcm.edu	37	20	16316574	16316574	+	Silent	SNP	T	T	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	16316574	T	G	16316574	2	3	11	1	0	0	0	0	0	0	0	1	8285	1567	55	5		5	KIF16B	20	16316574	Silent	SNP	T	TCGA-A3-3357-01A-02D-1421-08	1	16316574	46708946	94	675	10	2									
GGT7	2686	broad.mit.edu;hgsc.bcm.edu	37	20	33433135	33433135	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	33433135	A	C	33433135	3	2	11	1	0	0	0	0	1	0	0	0	6371	188	7	5	7	5	GGT7	20	33433135	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	17116561	33433135	29592385	95	676											
BRWD1	54014	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	40636400	40636400	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	G	40636400	C	G	40636400	3	3	11	1	0	0	0	0	1	0	0	0	1527	739	26	4	5434	4	BRWD1	21	40636400	Missense_Mutation	SNP	C	TCGA-A3-3357-01A-02D-1421-08		40636400	7493495	96	677											
TOM1	10043	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	35719146	35719146	+	Silent	SNP	T	T	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	35719146	T	C	35719146	2	2	11	1	0	0	0	0	0	0	0	1	16363	1461	51	3		3	TOM1	22	35719146	Silent	SNP	T	TCGA-A3-3357-01A-02D-1421-08		35719146	15585420	97	678											
TNRC6B	23112	broad.mit.edu	37	22	40662297	40662297	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	C	40662297	C	C	40662297	3	2	11	1	0	0	0	0	1	0	0	0	16353	304	11	5	2202	5	TNRC6B	22	40662297	Missense_Mutation	SNP	A	TCGA-A3-3357-01A-02D-1421-08	4943151	40662297	10642269	98	679											
TCF20	6942	broad.mit.edu;ucsc.edu	37	22	42607966	42607966	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3357-01A-02D-1421-08	TCGA-A3-3357-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db6f5ad9-ae6e-4689-b146-f733f8352c54	48b92145-0704-4f2e-aebf-fcbff040dfe1	T	42607966	T	T	42607966	3	4	11	1	0	0	0	0	1	0	0	0	15702	1328	46	4	2574	4	TCF20	22	42607966	Missense_Mutation	SNP	G	TCGA-A3-3357-01A-02D-1421-08	1945669	42607966	8696600	99	680											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16255505	16255505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	16255505	C	T	16255505	3	4	12	1	0	0	0	0	1	0	0	0	15050	739	26	2	2812	2	SPEN	1	16255505	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10		16255505	232995116	1	681											
CDC7	8317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	91978791	91978791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	91978791	C	T	91978791	3	4	12	1	0	0	0	0	1	0	0	0	3086	855	30	2	771	2	CDC7	1	91978791	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	75723286	91978791	157271830	2	682											
PIP5K1A	8394	hgsc.bcm.edu	37	1	151206687	151206687	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	-	151206687	C	-	151206687	7	5	12	1	0	1	0	1	0	0	0	0	11946	506	18	0	684	0	PIP5K1A	1	151206687	Frame_Shift_Del	DEL	C	TCGA-A3-3358-01A-01D-1534-10	59227896	151206687	98043934	3	683											
SPTA1	6708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158609713	158609713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	158609713	G	A	158609713	3	1	12	1	0	0	0	0	1	0	0	0	15128	1058	37	1	2513	1	SPTA1	1	158609713	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	7403026	158609713	90640908	4	684											
C1orf129	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	170914714	170914714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	170914714	C	T	170914714	3	4	12	1	0	0	0	0	1	0	0	0	1998	594	21	2	19	2	C1orf129	1	170914714	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	12305001	170914714	78335907	5	685											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	185985179	185985179	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	185985179	G	T	185985179	4	4	12	1	0	0	0	0	0	1	0	0	7227	1349	47	4	5125	4	HMCN1	1	185985179	Nonsense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	15070465	185985179	63265442	6	686											
KIF21B	23046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200943295	200943295	+	Silent	SNP	G	G	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	200943295	G	A	200943295	2	1	12	1	0	0	0	0	0	0	0	1	8296	1140	40	1		1	KIF21B	1	200943295	Silent	SNP	G	TCGA-A3-3358-01A-01D-1534-10	14958116	200943295	48307326	7	687											
NENF	29937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	212619210	212619210	+	Silent	SNP	G	G	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	212619210	G	A	212619210	2	1	12	1	0	0	0	0	0	0	0	1	10342	991	35	2		2	NENF	1	212619210	Silent	SNP	G	TCGA-A3-3358-01A-01D-1534-10	11675915	212619210	36631411	8	688											
PPPDE1	0	broad.mit.edu	37	1	244868992	244868992	+	Silent	SNP	A	G	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	244868992	G	G	244868992	2	3	12	1	0	0	0	0	0	0	0	1	12418	40	2	3		3	PPPDE1	1	244868992	Silent	SNP	A	TCGA-A3-3358-01A-01D-1534-10	32249782	244868992	4381629	9	689											
OR6F1	343169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247875599	247875599	+	Missense_Mutation	SNP	G	G	T	rs144440883	byfrequency;alternate_allele	TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	247875599	G	T	247875599	3	4	12	1	0	0	0	0	1	0	0	0	11208	1049	37	4	471	4	OR6F1	1	247875599	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	3006607	247875599	1375022	10	690											
YIPF4	84272	broad.mit.edu;ucsc.edu	37	2	32517399	32517399	+	Silent	SNP	A	G	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	32517399	G	G	32517399	2	3	12	1	0	0	0	0	0	0	0	1	17492	204	8	3		3	YIPF4	2	32517399	Silent	SNP	A	TCGA-A3-3358-01A-01D-1534-10		32517399	210681974	11	691											
TMEM150A	129303	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	85828190	85828190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	85828190	C	T	85828190	3	4	12	1	0	0	0	0	1	0	0	0	16079	681	24	2	681	2	TMEM150A	2	85828190	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	53310791	85828190	157371183	12	692											
ERCC3	2071	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128036918	128036918	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	128036918	C	A	128036918	4	1	12	1	0	0	0	0	0	1	0	0	5216	864	30	4	811	4	ERCC3	2	128036918	Nonsense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	42208728	128036918	115162455	13	693											
GPD2	2820	broad.mit.edu;ucsc.edu	37	2	157426664	157426664	+	Silent	SNP	G	A	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	157426664	A	A	157426664	2	1	12	1	0	0	0	0	0	0	0	1	6613	1277	45	2		2	GPD2	2	157426664	Silent	SNP	G	TCGA-A3-3358-01A-01D-1534-10	29389746	157426664	85772709	14	694											
C2orf67	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	210889861	210889861	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	210889861	C	T	210889861	4	4	12	1	0	0	0	0	0	1	0	0	2188	595	21	2	444	2	C2orf67	2	210889861	Nonsense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	53463197	210889861	32309512	15	695											
FN1	2335	broad.mit.edu;ucsc.edu	37	2	216274775	216274775	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	C	216274775	C	C	216274775	3	2	12	1	0	0	0	0	1	0	0	0	5969	1280	45	4	5561	4	FN1	2	216274775	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	5384914	216274775	26924598	16	696											
SETD2	29072	broad.mit.edu;ucsc.edu	37	3	47079269	47079269	+	Splice_Site	SNP	T	A	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	47079269	A	A	47079269	5	1	12	1	0	0	0	0	0	0	1	0	14144	1536	53	5	473	5	SETD2	3	47079269	Splice_Site	SNP	T	TCGA-A3-3358-01A-01D-1534-10		47079269	150943161	17	697											
FRAS1	80144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	79420893	79420893	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	C	79420893	A	C	79420893	3	2	12	1	0	0	0	0	1	0	0	0	6049	246	9	5	9451	5	FRAS1	4	79420893	Missense_Mutation	SNP	A	TCGA-A3-3358-01A-01D-1534-10		79420893	111733383	18	698											
ANXA10	11199	broad.mit.edu;ucsc.edu	37	4	169085402	169085402	+	Silent	SNP	T	C	C	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	C	169085402	C	C	169085402	2	2	12	1	0	0	0	0	0	0	0	1	715	1461	51	3		3	ANXA10	4	169085402	Silent	SNP	T	TCGA-A3-3358-01A-01D-1534-10	89664509	169085402	22068874	19	699											
CSNK1G3	1456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	122923847	122923847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	122923847	G	T	122923847	3	4	12	1	0	0	0	0	1	0	0	0	3958	1014	35	4	781	4	CSNK1G3	5	122923847	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10		122923847	57991413	20	700											
PCDHB5	26167	broad.mit.edu;hgsc.bcm.edu	37	5	140517263	140517263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	140517263	C	A	140517263	3	1	12	1	0	0	0	0	1	0	0	0	11552	564	20	4	2249	4	PCDHB5	5	140517263	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	17593416	140517263	40397997	21	701											
HLA-C	3107	hgsc.bcm.edu	37	6	31238126	31238126	+	Silent	SNP	G	G	A	rs79295030		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	31238126	G	A	31238126	2	1	12	1	0	0	0	0	0	0	0	1	7204	1103	39	1		1	HLA-C	6	31238126	Silent	SNP	G	TCGA-A3-3358-01A-01D-1534-10		31238126	139876941	22	702											
HTR1E	3354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	87725923	87725923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	87725923	C	T	87725923	3	4	12	1	0	0	0	0	1	0	0	0	7446	536	19	1	873	1	HTR1E	6	87725923	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	56487797	87725923	83389144	23	703											
EPM2A	7957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	145948647	145948647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	145948647	G	T	145948647	3	4	12	1	0	0	0	0	1	0	0	0	5185	1203	42	4	132	4	EPM2A	6	145948647	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	58222724	145948647	25166420	24	704											
TYW1	55253	broad.mit.edu	37	7	66582492	66582492	+	Silent	SNP	C	T	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	66582492	T	T	66582492	2	4	12	1	0	0	0	0	0	0	0	1	16830	796	28	2		2	TYW1	7	66582492	Silent	SNP	C	TCGA-A3-3358-01A-01D-1534-10		66582492	92556171	25	705											
MCM7	4176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99695276	99695276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	99695276	C	T	99695276	3	4	12	1	0	0	0	0	1	0	0	0	9399	652	23	1	1109	1	MCM7	7	99695276	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	33112784	99695276	59443387	26	706											
DENND2A	27147	broad.mit.edu	37	7	140301430	140301430	+	Silent	SNP	A	C	C	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	C	140301430	C	C	140301430	2	2	12	1	0	0	0	0	0	0	0	1	4431	30	2	5		5	DENND2A	7	140301430	Silent	SNP	A	TCGA-A3-3358-01A-01D-1534-10	40606154	140301430	18837233	27	707											
CHMP7	91782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	23116262	23116262	+	Silent	SNP	G	G	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	23116262	G	A	23116262	2	1	12	1	0	0	0	0	0	0	0	1	3363	991	35	2		2	CHMP7	8	23116262	Silent	SNP	G	TCGA-A3-3358-01A-01D-1534-10		23116262	123247760	28	708											
CCL27	10850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	34662409	34662409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	34662409	G	T	34662409	3	4	12	1	0	0	0	0	1	0	0	0	2901	1165	41	4	271	4	CCL27	9	34662409	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10		34662409	106551022	29	709											
KIAA0913	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75545700	75545700	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	75545700	T	G	75545700	3	3	12	1	0	0	0	0	1	0	0	0	8207	1841	64	5	66	5	KIAA0913	10	75545700	Missense_Mutation	SNP	T	TCGA-A3-3358-01A-01D-1534-10		75545700	59989047	30	710											
CPXM2	119587	broad.mit.edu	37	10	125651046	125651046	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	125651046	T	T	125651046	3	4	12	1	0	0	0	0	1	0	0	0	3840	864	30	2	2196	2	CPXM2	10	125651046	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	50105346	125651046	9883701	31	711											
BCCIP	56647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	127520153	127520153	+	Silent	SNP	T	T	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	127520153	T	G	127520153	2	3	12	1	0	0	0	0	0	0	0	1	1356	1538	54	5		5	BCCIP	10	127520153	Silent	SNP	T	TCGA-A3-3358-01A-01D-1534-10	1869107	127520153	8014594	32	712											
MICAL2	9645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	12278355	12278355	+	Silent	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	12278355	C	T	12278355	2	4	12	1	0	0	0	0	0	0	0	1	9577	610	22	2		2	MICAL2	11	12278355	Silent	SNP	C	TCGA-A3-3358-01A-01D-1534-10		12278355	122728161	33	713											
MRPL48	51642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	73555925	73555925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	73555925	A	G	73555925	3	3	12	1	0	0	0	0	1	0	0	0	9819	101	4	3	293	3	MRPL48	11	73555925	Missense_Mutation	SNP	A	TCGA-A3-3358-01A-01D-1534-10	61277570	73555925	61450591	34	714											
CSDA	8531	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10865871	10865871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	10865871	G	A	10865871	3	1	12	1	0	0	0	0	1	0	0	0	3929	971	34	2	626	2	CSDA	12	10865871	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10		10865871	122986024	35	715											
FAM71C	196472	broad.mit.edu;ucsc.edu	37	12	100042248	100042248	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	C	100042248	C	C	100042248	3	2	12	1	0	0	0	0	1	0	0	0	5616	1000	35	4	298	4	FAM71C	12	100042248	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	89176377	100042248	33809647	36	716											
NUAK1	9891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	106466600	106466600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	C	106466600	T	C	106466600	3	2	12	1	0	0	0	0	1	0	0	0	10719	1812	63	3	1396	3	NUAK1	12	106466600	Missense_Mutation	SNP	T	TCGA-A3-3358-01A-01D-1534-10	6424352	106466600	27385295	37	717											
LMO7	4008	hgsc.bcm.edu;ucsc.edu	37	13	76427480	76427480	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	-	76427480	C	-	76427480	7	5	12	1	0	1	0	1	0	0	0	0	8862	738	26	0	4887	0	LMO7	13	76427480	Frame_Shift_Del	DEL	C	TCGA-A3-3358-01A-01D-1534-10		76427480	38742398	38	718											
G2E3	55632	broad.mit.edu;hgsc.bcm.edu	37	14	31074726	31074726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	31074726	T	G	31074726	3	3	12	1	0	0	0	0	1	0	0	0	6147	1751	61	5	1064	5	G2E3	14	31074726	Missense_Mutation	SNP	T	TCGA-A3-3358-01A-01D-1534-10		31074726	76274814	39	719											
YLPM1	56252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75248651	75248651	+	Silent	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	75248651	C	T	75248651	2	4	12	1	0	0	0	0	0	0	0	1	17498	610	22	2		2	YLPM1	14	75248651	Silent	SNP	C	TCGA-A3-3358-01A-01D-1534-10	44173925	75248651	32100889	40	720											
GLDN	342035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51692438	51692438	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	51692438	T	A	51692438	3	1	12	1	0	0	0	0	1	0	0	0	6441	1461	51	5	893	5	GLDN	15	51692438	Missense_Mutation	SNP	T	TCGA-A3-3358-01A-01D-1534-10		51692438	50838954	41	721											
CPEB1	64506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	83221251	83221251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	C	83221251	G	C	83221251	3	2	12	1	0	0	0	0	1	0	0	0	3802	1194	42	4	526	4	CPEB1	15	83221251	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	31528813	83221251	19310141	42	722											
FAM57B	83723	broad.mit.edu	37	16	30036624	30036624	+	Silent	SNP	G	A	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	30036624	A	A	30036624	2	1	12	1	0	0	0	0	0	0	0	1	5596	1252	44	2		2	FAM57B	16	30036624	Silent	SNP	G	TCGA-A3-3358-01A-01D-1534-10		30036624	60318129	43	723											
SLC12A4	6560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67983803	67983803	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	67983803	C	G	67983803	3	3	12	1	0	0	0	0	1	0	0	0	14398	507	18	4	1657	4	SLC12A4	16	67983803	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	37947179	67983803	22370950	44	724	11	2									
SLC12A4	6560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67983804	67983804	+	Missense_Mutation	SNP	C	C	A	rs184951084	by1000genomes	TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	67983804	C	A	67983804	3	1	12	1	0	0	0	0	1	0	0	0	14398	680	24	4	1658	4	SLC12A4	16	67983804	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	1	67983804	22370949	45	725	11	2									
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11583161	11583161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	11583161	G	T	11583161	3	4	12	1	0	0	0	0	1	0	0	0	4610	933	33	4	3511	4	DNAH9	17	11583161	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10		11583161	69612049	46	726											
LLGL1	3996	broad.mit.edu;ucsc.edu	37	17	18141525	18141526	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	18141526	A	A	18141525	7	5	12	1	0	1	1	0	0	0	0	0	8840	709	25	0	2107	0	LLGL1	17	18141525	Frame_Shift_Ins	INS	-	TCGA-A3-3358-01A-01D-1534-10	6558364	18141525	63053685	47	727											
SSH2	85464	hgsc.bcm.edu;ucsc.edu	37	17	27958639	27958642	+	Frame_Shift_Del	DEL	CTGA	CTGA	-	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	CTGA	CTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	-	27958642	CTGA	-	27958639	7	5	12	1	0	1	0	1	0	0	0	0	15197	680	24	0	783	0	SSH2	17	27958639	Frame_Shift_Del	DEL	CTGA	TCGA-A3-3358-01A-01D-1534-10	9817114	27958639	53236571	48	728											
UNC45B	146862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33495265	33495265	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	33495265	T	G	33495265	3	3	12	1	0	0	0	0	1	0	0	0	17001	1435	50	5	1371	5	UNC45B	17	33495265	Missense_Mutation	SNP	T	TCGA-A3-3358-01A-01D-1534-10	5536626	33495265	47699945	49	729											
PCGF2	7703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36892363	36892363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	36892363	A	T	36892363	3	4	12	1	0	0	0	0	1	0	0	0	11582	420	15	5	405	5	PCGF2	17	36892363	Missense_Mutation	SNP	A	TCGA-A3-3358-01A-01D-1534-10	3397098	36892363	44302847	50	730											
CCDC45	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62512882	62512882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	62512882	C	A	62512882	3	1	12	1	0	0	0	0	1	0	0	0	2818	536	19	4	427	4	CCDC45	17	62512882	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	25620519	62512882	18682328	51	731											
EXOC7	23265	broad.mit.edu	37	17	74093949	74093949	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	74093949	A	A	74093949	3	1	12	1	0	0	0	0	1	0	0	0	5312	1319	46	2	1703	2	EXOC7	17	74093949	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	11581067	74093949	7101261	52	732											
SETBP1	26040	broad.mit.edu;hgsc.bcm.edu	37	18	42530495	42530495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	42530495	C	T	42530495	3	4	12	1	0	0	0	0	1	0	0	0	14142	838	29	2	1393	2	SETBP1	18	42530495	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10		42530495	35546753	53	733											
GPX4	2879	broad.mit.edu;ucsc.edu	37	19	1106418	1106418	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	C	1106418	C	C	1106418	3	2	12	1	0	0	0	0	1	0	0	0	6749	1203	42	4	764	4	GPX4	19	1106418	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10		1106418	58022565	54	734	12	2									
GPX4	2879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1106419	1106419	+	Silent	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	1106419	C	T	1106419	2	4	12	1	0	0	0	0	0	0	0	1	6749	796	28	2		2	GPX4	19	1106419	Silent	SNP	C	TCGA-A3-3358-01A-01D-1534-10	1	1106419	58022564	55	735	12	2									
UHRF1	29128	broad.mit.edu;hgsc.bcm.edu	37	19	4950899	4950899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	4950899	A	G	4950899	3	3	12	1	0	0	0	0	1	0	0	0	16979	72	3	3	1794	3	UHRF1	19	4950899	Missense_Mutation	SNP	A	TCGA-A3-3358-01A-01D-1534-10	3844480	4950899	54178084	56	736											
UNC13A	23025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17756598	17756598	+	Silent	SNP	G	G	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	17756598	G	A	17756598	2	1	12	1	0	0	0	0	0	0	0	1	16996	1136	40	1		1	UNC13A	19	17756598	Silent	SNP	G	TCGA-A3-3358-01A-01D-1534-10	12805699	17756598	41372385	57	737											
ZNF429	353088	broad.mit.edu;hgsc.bcm.edu	37	19	21720845	21720845	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	21720845	A	T	21720845	3	4	12	1	0	0	0	0	1	0	0	0	17914	333	12	5	2004	5	ZNF429	19	21720845	Missense_Mutation	SNP	A	TCGA-A3-3358-01A-01D-1534-10	3964247	21720845	37408138	58	738											
RAB4B	53916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41286335	41286335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	41286335	G	A	41286335	3	1	12	1	0	0	0	0	1	0	0	0	12960	1116	39	1	153	1	RAB4B	19	41286335	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	19565490	41286335	17842648	59	739			1	1		2	2	16	G		3.391773e-05
RAB4B	53916	broad.mit.edu;ucsc.edu	37	19	41286350	41286350	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	41286350	T	T	41286350	3	4	12	1	0	0	0	0	1	0	0	0	12960	1261	44	4	168	4	RAB4B	19	41286350	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	15	41286350	17842633	60	740			1	1		2	2	16	G		3.391773e-05
PSG5	5673	broad.mit.edu;hgsc.bcm.edu	37	19	43680096	43680096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	C	43680096	G	C	43680096	3	2	12	1	0	0	0	0	1	0	0	0	12668	1377	48	4	384	4	PSG5	19	43680096	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	2393746	43680096	15448887	61	741											
A1BG	1	broad.mit.edu	37	19	58863915	58863915	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	58863915	T	T	58863915	4	4	12	1	0	0	0	0	0	1	0	0	1	131	5	5	1160	5	A1BG	19	58863915	Nonsense_Mutation	SNP	A	TCGA-A3-3358-01A-01D-1534-10	15183819	58863915	265068	62	742											
SUN5	140732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31572986	31572986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	31572986	C	T	31572986	3	4	12	1	0	0	0	0	1	0	0	0	15406	594	21	2	244	2	SUN5	20	31572986	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10		31572986	31452534	63	743											
ZNF512B	57473	broad.mit.edu;hgsc.bcm.edu	37	20	62596015	62596015	+	Silent	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	62596015	C	T	62596015	2	4	12	1	0	0	0	0	0	0	0	1	17969	912	32	2		2	ZNF512B	20	62596015	Silent	SNP	C	TCGA-A3-3358-01A-01D-1534-10	31023029	62596015	429505	64	744											
PKNOX1	5316	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	44427621	44427621	+	Silent	SNP	A	A	G	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	G	44427621	A	G	44427621	2	3	12	1	0	0	0	0	0	0	0	1	11989	359	13	3		3	PKNOX1	21	44427621	Silent	SNP	A	TCGA-A3-3358-01A-01D-1534-10		44427621	3702274	65	745											
MAGEB10	139422	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	27840135	27840135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	27840135	C	A	27840135	3	1	12	1	0	0	0	0	1	0	0	0	9180	710	25	4	714	4	MAGEB10	23	27840135	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10		27840135	127430425	66	746											
WAS	7454	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48544489	48544489	+	Silent	SNP	A	A	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	48544489	A	T	48544489	2	4	12	1	0	0	0	0	0	0	0	1	17263	146	6	5		5	WAS	23	48544489	Silent	SNP	A	TCGA-A3-3358-01A-01D-1534-10	20704354	48544489	106726071	67	747											
WNK3	65267	hgsc.bcm.edu;ucsc.edu	37	X	54276546	54276546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	54276546	G	T	54276546	4	4	12	1	0	0	0	0	0	1	0	0	17391	1294	45	4	2844	4	WNK3	23	54276546	Nonsense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	5732057	54276546	100994014	68	748											
ERCC6L	54821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	71426172	71426172	+	Silent	SNP	T	T	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	71426172	T	A	71426172	2	1	12	1	0	0	0	0	0	0	0	1	5220	1799	63	5		5	ERCC6L	23	71426172	Silent	SNP	T	TCGA-A3-3358-01A-01D-1534-10	17149626	71426172	83844388	69	749											
ATRX	546	broad.mit.edu	37	X	76777788	76777788	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	76777788	T	T	76777788	3	4	12	1	0	0	0	0	1	0	0	0	1208	1174	41	4	566	4	ATRX	23	76777788	Missense_Mutation	SNP	G	TCGA-A3-3358-01A-01D-1534-10	5351616	76777788	78492772	70	750											
GPC3	2719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	132834052	132834052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	A	132834052	C	A	132834052	3	1	12	1	0	0	0	0	1	0	0	0	6606	739	26	4	725	4	GPC3	23	132834052	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	56056264	132834052	22436508	71	751											
ZNF75D	7626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	134427883	134427883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3358-01A-01D-1534-10	TCGA-A3-3358-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fd42afa7-6f0f-48e8-a947-bb9c9f4770ef	a7a2b9c5-641d-4644-99d2-a4beeac3aa0e	T	134427883	C	T	134427883	3	4	12	1	0	0	0	0	1	0	0	0	18146	661	23	1	1368	1	ZNF75D	23	134427883	Missense_Mutation	SNP	C	TCGA-A3-3358-01A-01D-1534-10	1593831	134427883	20842677	72	752											
KIAA0467	0	broad.mit.edu;ucsc.edu	37	1	43897031	43897031	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	43897031	T	T	43897031	3	4	13	1	0	0	0	0	1	0	0	0	8185	594	21	2	2381	2	KIAA0467	1	43897031	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10		43897031	205353590	1	753											
CYP2J2	1573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	60359336	60359336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	60359336	A	T	60359336	3	4	13	1	0	0	0	0	1	0	0	0	4174	43	2	5	16	5	CYP2J2	1	60359336	Missense_Mutation	SNP	A	TCGA-A3-3362-01A-02D-1386-10	16462305	60359336	188891285	2	754											
ILF2	3608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153637769	153637769	+	Silent	SNP	A	A	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	153637769	A	G	153637769	2	3	13	1	0	0	0	0	0	0	0	1	7718	59	3	3		3	ILF2	1	153637769	Silent	SNP	A	TCGA-A3-3362-01A-02D-1386-10	93278433	153637769	95612852	3	755											
NUP210L	91181	broad.mit.edu;ucsc.edu	37	1	154031095	154031095	+	Silent	SNP	T	A	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	154031095	A	A	154031095	2	1	13	1	0	0	0	0	0	0	0	1	10768	1567	55	5		5	NUP210L	1	154031095	Silent	SNP	T	TCGA-A3-3362-01A-02D-1386-10	393326	154031095	95219526	4	756											
TAF5L	27097	broad.mit.edu;hgsc.bcm.edu	37	1	229738474	229738474	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	229738474	T	G	229738474	3	3	13	1	0	0	0	0	1	0	0	0	15541	1580	55	5	1343	5	TAF5L	1	229738474	Missense_Mutation	SNP	T	TCGA-A3-3362-01A-02D-1386-10	75707379	229738474	19512147	5	757											
HPCAL1	3241	broad.mit.edu	37	2	10560058	10560058	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	10560058	A	A	10560058	3	1	13	1	0	0	0	0	1	0	0	0	7337	1116	39	1	177	1	HPCAL1	2	10560058	Missense_Mutation	SNP	G	TCGA-A3-3362-01A-02D-1386-10		10560058	232639315	6	758											
SCN9A	6335	hgsc.bcm.edu;ucsc.edu	37	2	167055463	167055463	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	-	167055463	T	-	167055463	7	5	13	1	0	1	0	1	0	0	0	0	13938	1464	51	0	284	0	SCN9A	2	167055463	Frame_Shift_Del	DEL	T	TCGA-A3-3362-01A-02D-1386-10	156495405	167055463	76143910	7	759											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179468975	179468975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	179468975	A	G	179468975	3	3	13	1	0	0	0	0	1	0	0	0	16747	449	16	3	53578	3	TTN	2	179468975	Missense_Mutation	SNP	A	TCGA-A3-3362-01A-02D-1386-10	12413512	179468975	63730398	8	760											
NHEJ1	79840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219942000	219942000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	219942000	G	A	219942000	3	1	13	1	0	0	0	0	1	0	0	0	10409	1232	43	2	114	2	NHEJ1	2	219942000	Missense_Mutation	SNP	G	TCGA-A3-3362-01A-02D-1386-10	40473025	219942000	23257373	9	761											
SPHKAP	80309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228882779	228882779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	228882779	C	T	228882779	3	4	13	1	0	0	0	0	1	0	0	0	15060	864	30	2	2335	2	SPHKAP	2	228882779	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10	8940779	228882779	14316594	10	762											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10188321	10188321	+	Splice_Site	SNP	G	C	C	rs5030814	bycluster	TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	C	10188321	C	C	10188321	5	2	13	1	0	0	0	0	0	0	1	0	17174	1275	44	4	470	4	VHL	3	10188321	Splice_Site	SNP	G	TCGA-A3-3362-01A-02D-1386-10		10188321	187834109	11	763											
LAMB2	3913	broad.mit.edu	37	3	49168474	49168474	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	C	49168474	C	C	49168474	3	2	13	1	0	0	0	0	1	0	0	0	8618	1406	49	3	4676	3	LAMB2	3	49168474	Missense_Mutation	SNP	T	TCGA-A3-3362-01A-02D-1386-10	38980153	49168474	148853956	12	764											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52649414	52649414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	52649414	C	A	52649414	3	1	13	1	0	0	0	0	1	0	0	0	11498	739	26	4	3087	4	PBRM1	3	52649414	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10	3480940	52649414	145373016	13	765											
IGSF10	285313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	151160939	151160939	+	Silent	SNP	A	A	C	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	C	151160939	A	C	151160939	2	2	13	1	0	0	0	0	0	0	0	1	7604	349	13	5		5	IGSF10	3	151160939	Silent	SNP	A	TCGA-A3-3362-01A-02D-1386-10	98511525	151160939	46861491	14	766											
KCNAB1	7881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	156009745	156009745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	156009745	G	T	156009745	3	4	13	1	0	0	0	0	1	0	0	0	8016	1348	47	4	576	4	KCNAB1	3	156009745	Missense_Mutation	SNP	G	TCGA-A3-3362-01A-02D-1386-10	4848806	156009745	42012685	15	767											
MUC4	4585	hgsc.bcm.edu	37	3	195507129	195507129	+	Silent	SNP	G	G	T	rs74201433	byfrequency;by1000genomes	TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	195507129	G	T	195507129	2	4	13	1	0	0	0	0	0	0	0	1	9985	1335	47	4		4	MUC4	3	195507129	Silent	SNP	G	TCGA-A3-3362-01A-02D-1386-10	39497384	195507129	2515301	16	768											
LPHN3	23284	hgsc.bcm.edu	37	4	62936198	62936198	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	-	62936198	C	-	62936198	7	5	13	1	0	1	0	1	0	0	0	0	8924	855	30	0	4072	0	LPHN3	4	62936198	Frame_Shift_Del	DEL	C	TCGA-A3-3362-01A-02D-1386-10		62936198	128218078	17	769											
HSPA4L	22824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	128729255	128729255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	128729255	A	T	128729255	3	4	13	1	0	0	0	0	1	0	0	0	7420	217	8	5	1391	5	HSPA4L	4	128729255	Missense_Mutation	SNP	A	TCGA-A3-3362-01A-02D-1386-10	65793057	128729255	62425021	18	770											
PAIP1	10605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	43555944	43555944	+	Silent	SNP	A	A	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	43555944	A	T	43555944	2	4	13	1	0	0	0	0	0	0	0	1	11403	59	3	5		5	PAIP1	5	43555944	Silent	SNP	A	TCGA-A3-3362-01A-02D-1386-10		43555944	137359316	19	771											
LNPEP	4012	broad.mit.edu	37	5	96350753	96350753	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	96350753	G	G	96350753	3	3	13	1	0	0	0	0	1	0	0	0	8871	43	2	3	2380	3	LNPEP	5	96350753	Missense_Mutation	SNP	A	TCGA-A3-3362-01A-02D-1386-10	52794809	96350753	84564507	20	772											
MCC	4163	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	112458491	112458491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	112458491	T	G	112458491	3	3	13	1	0	0	0	0	1	0	0	0	9380	1783	62	5	2198	5	MCC	5	112458491	Missense_Mutation	SNP	T	TCGA-A3-3362-01A-02D-1386-10	16107738	112458491	68456769	21	773											
YTHDC2	64848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	112899071	112899071	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	112899071	A	T	112899071	3	4	13	1	0	0	0	0	1	0	0	0	17509	260	9	5	2398	5	YTHDC2	5	112899071	Missense_Mutation	SNP	A	TCGA-A3-3362-01A-02D-1386-10	440580	112899071	68016189	22	774											
SKIV2L	6499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	31928300	31928300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	31928300	C	T	31928300	3	4	13	1	0	0	0	0	1	0	0	0	14372	594	21	2	464	2	SKIV2L	6	31928300	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10		31928300	139186767	23	775											
MCM3	4172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	52129392	52129392	+	Silent	SNP	G	G	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	52129392	G	A	52129392	2	1	13	1	0	0	0	0	0	0	0	1	9394	1277	45	2		2	MCM3	6	52129392	Silent	SNP	G	TCGA-A3-3362-01A-02D-1386-10	20201092	52129392	118985675	24	776											
C7orf46	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23728936	23728936	+	Silent	SNP	C	C	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	23728936	C	T	23728936	2	4	13	1	0	0	0	0	0	0	0	1	2398	581	21	2		2	C7orf46	7	23728936	Silent	SNP	C	TCGA-A3-3362-01A-02D-1386-10		23728936	135409727	25	777											
SPDYE6	729597	broad.mit.edu	37	7	101991206	101991206	+	Silent	SNP	G	A	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	101991206	A	A	101991206	2	1	13	1	0	0	0	0	0	0	0	1	15045	987	35	2		2	SPDYE6	7	101991206	Silent	SNP	G	TCGA-A3-3362-01A-02D-1386-10	78262270	101991206	57147457	26	778											
POT1	25913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	124487019	124487019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	124487019	C	A	124487019	3	1	13	1	0	0	0	0	1	0	0	0	12267	913	32	4	953	4	POT1	7	124487019	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10	22495813	124487019	34651644	27	779											
UHRF2	115426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	6420988	6420988	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	6420988	C	G	6420988	3	3	13	1	0	0	0	0	1	0	0	0	16982	681	24	4	236	4	UHRF2	9	6420988	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10		6420988	134792443	28	780											
TLN1	7094	broad.mit.edu;ucsc.edu	37	9	35704041	35704041	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	35704041	T	T	35704041	3	4	13	1	0	0	0	0	1	0	0	0	15959	826	29	2	1495	2	TLN1	9	35704041	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10	29283053	35704041	105509390	29	781											
CNTNAP3	79937	hgsc.bcm.edu	37	9	39103777	39103777	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	-	39103777	G	-	39103777	7	5	13	1	0	1	0	1	0	0	0	0	3650	991	35	0	1402	0	CNTNAP3	9	39103777	Frame_Shift_Del	DEL	G	TCGA-A3-3362-01A-02D-1386-10	3399736	39103777	102109654	30	782											
ZNF483	158399	hgsc.bcm.edu;ucsc.edu	37	9	114305026	114305026	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	-	114305026	A	-	114305026	7	5	13	1	0	1	0	1	0	0	0	0	17948	246	9	0	1829	0	ZNF483	9	114305026	Frame_Shift_Del	DEL	A	TCGA-A3-3362-01A-02D-1386-10	75201249	114305026	26908405	31	783											
DDX50	79009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70670871	70670871	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	70670871	C	G	70670871	3	3	13	1	0	0	0	0	1	0	0	0	4370	855	30	4	522	4	DDX50	10	70670871	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10		70670871	64863876	32	784											
NKX2-3	159296	broad.mit.edu	37	10	101294877	101294877	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	101294877	A	A	101294877	3	1	13	1	0	0	0	0	1	0	0	0	10458	1087	38	1	500	1	NKX2-3	10	101294877	Missense_Mutation	SNP	G	TCGA-A3-3362-01A-02D-1386-10	30624006	101294877	34239870	33	785											
FZD4	8322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	86662562	86662562	+	Silent	SNP	G	G	C	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	C	86662562	G	C	86662562	2	2	13	1	0	0	0	0	0	0	0	1	6139	987	35	4		4	FZD4	11	86662562	Silent	SNP	G	TCGA-A3-3362-01A-02D-1386-10		86662562	48343954	34	786											
CAPRIN2	65981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	30868061	30868061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	30868061	C	T	30868061	3	4	13	1	0	0	0	0	1	0	0	0	2638	826	29	2	917	2	CAPRIN2	12	30868061	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10		30868061	102983834	35	787											
ACVR1B	91	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52374878	52374878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	C	52374878	T	C	52374878	3	2	13	1	0	0	0	0	1	0	0	0	221	1493	52	3	720	3	ACVR1B	12	52374878	Missense_Mutation	SNP	T	TCGA-A3-3362-01A-02D-1386-10	21506817	52374878	81477017	36	788											
OR10A7	121364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55614840	55614840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	55614840	A	T	55614840	3	4	13	1	0	0	0	0	1	0	0	0	10902	246	9	5	34	5	OR10A7	12	55614840	Missense_Mutation	SNP	A	TCGA-A3-3362-01A-02D-1386-10	3239962	55614840	78237055	37	789											
R3HDM2	22864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57648628	57648628	+	Silent	SNP	C	C	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	57648628	C	G	57648628	2	3	13	1	0	0	0	0	0	0	0	1	12901	813	29	4		4	R3HDM2	12	57648628	Silent	SNP	C	TCGA-A3-3362-01A-02D-1386-10	2033788	57648628	76203267	38	790											
SLC5A8	160728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	101584327	101584327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	101584327	A	G	101584327	3	3	13	1	0	0	0	0	1	0	0	0	14684	246	9	3	1120	3	SLC5A8	12	101584327	Missense_Mutation	SNP	A	TCGA-A3-3362-01A-02D-1386-10	43935699	101584327	32267568	39	791											
TMEM55B	90809	broad.mit.edu	37	14	20927414	20927414	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	20927414	A	A	20927414	3	1	13	1	0	0	0	0	1	0	0	0	16194	710	25	4	200	4	TMEM55B	14	20927414	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10		20927414	86422126	40	792											
AHNAK2	113146	broad.mit.edu	37	14	105413709	105413709	+	Silent	SNP	G	T	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	105413709	T	T	105413709	2	4	13	1	0	0	0	0	0	0	0	1	415	1335	47	4		4	AHNAK2	14	105413709	Silent	SNP	G	TCGA-A3-3362-01A-02D-1386-10	84486295	105413709	1935831	41	793											
CTDSPL2	51496	broad.mit.edu;ucsc.edu	37	15	44776439	44776439	+	Silent	SNP	T	G	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	44776439	G	G	44776439	2	3	13	1	0	0	0	0	0	0	0	1	4008	1596	56	5		5	CTDSPL2	15	44776439	Silent	SNP	T	TCGA-A3-3362-01A-02D-1386-10		44776439	57754953	42	794											
AKAP13	11214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	86279333	86279333	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	86279333	A	T	86279333	3	4	13	1	0	0	0	0	1	0	0	0	449	362	13	5	7721	5	AKAP13	15	86279333	Missense_Mutation	SNP	A	TCGA-A3-3362-01A-02D-1386-10	41502894	86279333	16252059	43	795											
PAQR4	124222	broad.mit.edu	37	16	3021699	3021699	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	3021699	T	T	3021699	3	4	13	1	0	0	0	0	1	0	0	0	11444	1116	39	4	582	4	PAQR4	16	3021699	Missense_Mutation	SNP	G	TCGA-A3-3362-01A-02D-1386-10		3021699	87333054	44	796											
C17orf53	78995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42225574	42225574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	42225574	C	T	42225574	3	4	13	1	0	0	0	0	1	0	0	0	1864	478	17	2	413	2	C17orf53	17	42225574	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10		42225574	38969636	45	797											
C17orf80	55028	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	71232490	71232490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	71232490	T	G	71232490	3	3	13	1	0	0	0	0	1	0	0	0	1887	1435	50	5	871	5	C17orf80	17	71232490	Missense_Mutation	SNP	T	TCGA-A3-3362-01A-02D-1386-10	29006916	71232490	9962720	46	798											
OR10H4	126541	hgsc.bcm.edu;ucsc.edu	37	19	16060085	16060085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	16060085	C	A	16060085	3	1	13	1	0	0	0	0	1	0	0	0	10915	594	21	4	270	4	OR10H4	19	16060085	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10		16060085	43068898	47	799											
ZNF91	7644	broad.mit.edu	37	19	23543539	23543539	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	23543539	A	A	23543539	3	1	13	1	0	0	0	0	1	0	0	0	18212	594	21	4	1337	4	ZNF91	19	23543539	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10	7483454	23543539	35585444	48	800											
GYS1	2997	broad.mit.edu;ucsc.edu	37	19	49477487	49477487	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	C	49477487	C	C	49477487	3	2	13	1	0	0	0	0	1	0	0	0	6919	1000	35	4	701	4	GYS1	19	49477487	Missense_Mutation	SNP	G	TCGA-A3-3362-01A-02D-1386-10	25933948	49477487	9651496	49	801											
CBFA2T2	9139	broad.mit.edu	37	20	32198915	32198915	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	G	32198915	G	G	32198915	3	3	13	1	0	0	0	0	1	0	0	0	2699	43	2	3	269	3	CBFA2T2	20	32198915	Missense_Mutation	SNP	A	TCGA-A3-3362-01A-02D-1386-10		32198915	30826605	50	802											
COL6A1	1291	broad.mit.edu	37	21	47409686	47409686	+	Silent	SNP	G	T	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	47409686	T	T	47409686	2	4	13	1	0	0	0	0	0	0	0	1	3701	1219	43	4		4	COL6A1	21	47409686	Silent	SNP	G	TCGA-A3-3362-01A-02D-1386-10		47409686	720209	51	803											
FAM47B	170062	broad.mit.edu	37	X	34961787	34961787	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	T	34961787	T	T	34961787	3	4	13	1	0	0	0	0	1	0	0	0	5577	768	27	1	841	1	FAM47B	23	34961787	Missense_Mutation	SNP	C	TCGA-A3-3362-01A-02D-1386-10		34961787	120308773	52	804											
COL4A6	1288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107457373	107457373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3362-01A-02D-1386-10	TCGA-A3-3362-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	03c9042a-0206-4f12-b444-62f435140e8d	0ec37c53-395f-4201-92d3-fbaa43f84e51	A	107457373	G	A	107457373	3	1	13	1	0	0	0	0	1	0	0	0	3697	1000	35	2	4822	2	COL4A6	23	107457373	Missense_Mutation	SNP	G	TCGA-A3-3362-01A-02D-1386-10	72495586	107457373	47813187	53	805											
RERE	473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	8419828	8419828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	8419828	G	A	8419828	3	1	14	1	0	0	0	0	1	0	0	0	13244	1087	38	1	1106	1	RERE	1	8419828	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08		8419828	240830793	1	806											
BTF3L4	91408	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	52525496	52525496	+	RNA	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	52525496	T	C	52525496	1	2	14	0	1	0	0	0	0	0	0	0	1554	1798	62	3		3	BTF3L4	1	52525496	RNA	SNP	T	TCGA-A3-3363-01A-01D-0966-08	44105668	52525496	196725125	2	807											
WLS	79971	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	68611602	68611602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	68611602	T	C	68611602	3	2	14	1	0	0	0	0	1	0	0	0	17388	1792	62	3	539	3	WLS	1	68611602	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08	16086106	68611602	180639019	3	808											
CDC14A	8556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100964760	100964760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	100964760	G	A	100964760	3	1	14	1	0	0	0	0	1	0	0	0	3058	1058	37	1	1770	1	CDC14A	1	100964760	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	32353158	100964760	148285861	4	809											
ANKRD34A	284615	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	145474166	145474166	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	145474166	C	G	145474166	3	3	14	1	0	0	0	0	1	0	0	0	662	680	24	4	840	4	ANKRD34A	1	145474166	Missense_Mutation	SNP	C	TCGA-A3-3363-01A-01D-0966-08	44509406	145474166	103776455	5	810											
SETDB1	9869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150923430	150923430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	150923430	T	C	150923430	3	2	14	1	0	0	0	0	1	0	0	0	14151	1580	55	3	2123	3	SETDB1	1	150923430	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08	5449264	150923430	98327191	6	811											
IGSF9	57549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	159897631	159897631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	159897631	G	A	159897631	3	1	14	1	0	0	0	0	1	0	0	0	7612	1232	43	2	270	2	IGSF9	1	159897631	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	8974201	159897631	89352990	7	812											
OBSCN	84033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	228400286	228400286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	228400286	G	A	228400286	3	1	14	1	0	0	0	0	1	0	0	0	10819	1059	37	1	804	1	OBSCN	1	228400286	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	68502655	228400286	20850335	8	813											
RHOB	388	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	20647327	20647327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	20647327	A	G	20647327	3	3	14	1	0	0	0	0	1	0	0	0	13345	391	14	3	103	3	RHOB	2	20647327	Missense_Mutation	SNP	A	TCGA-A3-3363-01A-01D-0966-08		20647327	222552046	9	814											
TP53I3	9540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24307066	24307066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	24307066	A	G	24307066	3	3	14	1	0	0	0	0	1	0	0	0	16399	372	13	3	887	3	TP53I3	2	24307066	Missense_Mutation	SNP	A	TCGA-A3-3363-01A-01D-0966-08	3659739	24307066	218892307	10	815											
TMEM214	54867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27258869	27258869	+	Silent	SNP	C	C	T	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	T	27258869	C	T	27258869	2	4	14	1	0	0	0	0	0	0	0	1	16149	845	30	2		2	TMEM214	2	27258869	Silent	SNP	C	TCGA-A3-3363-01A-01D-0966-08	2951803	27258869	215940504	11	816											
GPR155	151556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	175301104	175301104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	175301104	C	A	175301104	3	1	14	1	0	0	0	0	1	0	0	0	6667	826	29	4	263	4	GPR155	2	175301104	Missense_Mutation	SNP	C	TCGA-A3-3363-01A-01D-0966-08	148042235	175301104	67898269	12	817											
DNAH7	56171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	196729403	196729403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	196729403	T	C	196729403	3	2	14	1	0	0	0	0	1	0	0	0	4608	1493	52	3	5198	3	DNAH7	2	196729403	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08	21428299	196729403	46469970	13	818											
DNAH1	25981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52387249	52387249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	52387249	T	C	52387249	3	2	14	1	0	0	0	0	1	0	0	0	4599	1580	55	3	3228	3	DNAH1	3	52387249	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08		52387249	145635181	14	819											
CACNA1D	776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	53845394	53845394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	53845394	G	C	53845394	3	2	14	1	0	0	0	0	1	0	0	0	2543	991	35	4	6809	4	CACNA1D	3	53845394	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	1458145	53845394	144177036	15	820											
ZNF732	654254	broad.mit.edu;ucsc.edu	37	4	265156	265156	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	265156	C	C	265156	3	2	14	1	0	0	0	0	1	0	0	0	18135	1029	36	4	271	4	ZNF732	4	265156	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08		265156	190889120	16	821											
ADAMTS12	81792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33576716	33576716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	33576716	G	A	33576716	3	1	14	1	0	0	0	0	1	0	0	0	257	1203	42	2	1393	2	ADAMTS12	5	33576716	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08		33576716	147338544	17	822											
PCDHA6	56142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140209828	140209828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	140209828	T	C	140209828	3	2	14	1	0	0	0	0	1	0	0	0	11535	1638	57	3	2154	3	PCDHA6	5	140209828	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08	106633112	140209828	40705432	18	823											
HIST1H4E	8367	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	26205069	26205069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	26205069	T	C	26205069	3	2	14	1	0	0	0	0	1	0	0	0	7176	1696	59	3	199	3	HIST1H4E	6	26205069	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08		26205069	144909998	19	824											
TUBB	203068	hgsc.bcm.edu;ucsc.edu	37	6	30691536	30691543	+	Frame_Shift_Del	DEL	ATGAGTGG	ATGAGTGG	-	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	ATGAGTGG	ATGAGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	-	30691543	ATGAGTGG	-	30691536	7	5	14	1	0	1	0	1	0	0	0	0	16764	217	8	0	711	0	TUBB	6	30691536	Frame_Shift_Del	DEL	ATGAGTGG	TCGA-A3-3363-01A-01D-0966-08	4486467	30691536	140423531	20	825											
UNC5CL	222643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	41002736	41002736	+	Silent	SNP	A	A	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	41002736	A	G	41002736	2	3	14	1	0	0	0	0	0	0	0	1	17006	233	9	3		3	UNC5CL	6	41002736	Silent	SNP	A	TCGA-A3-3363-01A-01D-0966-08	10311200	41002736	130112331	21	826											
GPR110	266977	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46977033	46977033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	T	46977033	A	T	46977033	3	4	14	1	0	0	0	0	1	0	0	0	6634	449	16	5	614	5	GPR110	6	46977033	Missense_Mutation	SNP	A	TCGA-A3-3363-01A-01D-0966-08	5974297	46977033	124138034	22	827											
RBM16	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	155123148	155123148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	155123148	C	A	155123148	3	1	14	1	0	0	0	0	1	0	0	0	13131	623	22	4	676	4	RBM16	6	155123148	Missense_Mutation	SNP	C	TCGA-A3-3363-01A-01D-0966-08	108146115	155123148	15991919	23	828											
ARID1B	57492	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	157511244	157511244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	157511244	G	A	157511244	3	1	14	1	0	0	0	0	1	0	0	0	914	1290	45	2	3820	2	ARID1B	6	157511244	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	2388096	157511244	13603823	24	829											
COL1A2	1278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94055151	94055151	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	94055151	T	A	94055151	3	1	14	1	0	0	0	0	1	0	0	0	3680	1461	51	5	3099	5	COL1A2	7	94055151	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08		94055151	65083512	25	830											
NRCAM	4897	hgsc.bcm.edu	37	7	107848033	107848033	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	T	107848033	G	T	107848033	4	4	14	1	0	0	0	0	0	1	0	0	10651	1311	46	4	2882	4	NRCAM	7	107848033	Nonsense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	13792882	107848033	51290630	26	831											
RBM28	55131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127965927	127965927	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	127965927	A	C	127965927	3	2	14	1	0	0	0	0	1	0	0	0	13141	43	2	5	1168	5	RBM28	7	127965927	Missense_Mutation	SNP	A	TCGA-A3-3363-01A-01D-0966-08	20117894	127965927	31172736	27	832											
ATG9B	285973	broad.mit.edu	37	7	150715068	150715068	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	150715068	A	A	150715068	3	1	14	1	0	0	0	0	1	0	0	0	1103	1058	37	1	855	1	ATG9B	7	150715068	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	22749141	150715068	8423595	28	833											
LRRCC1	85444	broad.mit.edu;hgsc.bcm.edu	37	8	86019572	86019572	+	Silent	SNP	G	G	T	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	T	86019572	G	T	86019572	2	4	14	1	0	0	0	0	0	0	0	1	9033	1335	47	4		4	LRRCC1	8	86019572	Silent	SNP	G	TCGA-A3-3363-01A-01D-0966-08		86019572	60344450	29	834											
FREM1	158326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	14846003	14846003	+	Silent	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	14846003	G	A	14846003	2	1	14	1	0	0	0	0	0	0	0	1	6051	962	34	2		2	FREM1	9	14846003	Silent	SNP	G	TCGA-A3-3363-01A-01D-0966-08		14846003	126367428	30	835											
CREB3	10488	broad.mit.edu;ucsc.edu	37	9	35736669	35736669	+	Silent	SNP	A	G	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	35736669	G	G	35736669	2	3	14	1	0	0	0	0	0	0	0	1	3857	320	12	3		3	CREB3	9	35736669	Silent	SNP	A	TCGA-A3-3363-01A-01D-0966-08	20890666	35736669	105476762	31	836											
VAV2	7410	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136649535	136649535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	136649535	T	C	136649535	3	2	14	1	0	0	0	0	1	0	0	0	17144	1725	60	3	1150	3	VAV2	9	136649535	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08	100912866	136649535	4563896	32	837											
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	17110165	17110165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	17110165	A	G	17110165	3	3	14	1	0	0	0	0	1	0	0	0	4053	188	7	3	8153	3	CUBN	10	17110165	Missense_Mutation	SNP	A	TCGA-A3-3363-01A-01D-0966-08		17110165	118424582	33	838											
PLCE1	51196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96043555	96043555	+	Silent	SNP	C	C	T	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	T	96043555	C	T	96043555	2	4	14	1	0	0	0	0	0	0	0	1	12041	912	32	2		2	PLCE1	10	96043555	Silent	SNP	C	TCGA-A3-3363-01A-01D-0966-08	78933390	96043555	39491192	34	839											
MUC2	4583	broad.mit.edu	37	11	1093448	1093448	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	1093448	A	A	1093448	3	1	14	1	0	0	0	0	1	0	0	0	9982	507	18	4	5385	4	MUC2	11	1093448	Missense_Mutation	SNP	C	TCGA-A3-3363-01A-01D-0966-08		1093448	133913068	35	840											
NUCB2	4925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	17351711	17351711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	17351711	T	C	17351711	3	2	14	1	0	0	0	0	1	0	0	0	10726	1522	53	3	1078	3	NUCB2	11	17351711	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08	16258263	17351711	117654805	36	841											
DYRK4	8798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	4702286	4702286	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	T	4702286	A	T	4702286	3	4	14	1	0	0	0	0	1	0	0	0	4860	98	4	5	243	5	DYRK4	12	4702286	Missense_Mutation	SNP	A	TCGA-A3-3363-01A-01D-0966-08		4702286	129149609	37	842											
LOH12CR1	118426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	12618552	12618552	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	T	12618552	C	T	12618552	4	4	14	1	0	0	0	0	0	1	0	0	8898	711	25	2	447	2	LOH12CR1	12	12618552	Nonsense_Mutation	SNP	C	TCGA-A3-3363-01A-01D-0966-08	7916266	12618552	121233343	38	843											
PLEKHA9	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	45568052	45568052	+	RNA	SNP	T	T	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	45568052	T	C	45568052	1	2	14	0	1	0	0	0	0	0	0	0	12070	1493	52	3		3	PLEKHA9	12	45568052	RNA	SNP	T	TCGA-A3-3363-01A-01D-0966-08	32949500	45568052	88283843	39	844											
GOLGA3	2802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133384990	133384990	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	133384990	T	G	133384990	3	3	14	1	0	0	0	0	1	0	0	0	6561	1609	56	5	4049	5	GOLGA3	12	133384990	Missense_Mutation	SNP	T	TCGA-A3-3363-01A-01D-0966-08	87816938	133384990	466905	40	845											
LMO7	4008	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	76335071	76335071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	76335071	A	G	76335071	3	3	14	1	0	0	0	0	1	0	0	0	8862	362	13	3	388	3	LMO7	13	76335071	Missense_Mutation	SNP	A	TCGA-A3-3363-01A-01D-0966-08		76335071	38834807	41	846											
CHD8	57680	broad.mit.edu;hgsc.bcm.edu	37	14	21873953	21873953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	21873953	A	G	21873953	3	3	14	1	0	0	0	0	1	0	0	0	3333	246	9	3	4863	3	CHD8	14	21873953	Missense_Mutation	SNP	A	TCGA-A3-3363-01A-01D-0966-08		21873953	85475587	42	847											
KIAA0247	9766	broad.mit.edu;hgsc.bcm.edu	37	14	70170292	70170292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	70170292	G	A	70170292	3	1	14	1	0	0	0	0	1	0	0	0	8172	971	34	2	308	2	KIAA0247	14	70170292	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	48296339	70170292	37179248	43	848											
ARHGAP11A	9824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	32928531	32928531	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	-	32928531	G	-	32928531	7	5	14	1	0	1	0	1	0	0	0	0	863	1377	48	0	1626	0	ARHGAP11A	15	32928531	Frame_Shift_Del	DEL	G	TCGA-A3-3363-01A-01D-0966-08		32928531	69602861	44	849											
ANPEP	290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90349564	90349564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	T	90349564	G	T	90349564	3	4	14	1	0	0	0	0	1	0	0	0	710	1174	41	4	2732	4	ANPEP	15	90349564	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	57421033	90349564	12181828	45	850											
MPG	4350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	133207	133207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	133207	G	A	133207	3	1	14	1	0	0	0	0	1	0	0	0	9731	1145	40	1	510	1	MPG	16	133207	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08		133207	90221546	46	851											
CNOT1	23019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58589212	58589212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	58589212	G	C	58589212	3	2	14	1	0	0	0	0	1	0	0	0	3619	1000	35	4	4634	4	CNOT1	16	58589212	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08	58456005	58589212	31765541	47	852											
PFAS	5198	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8168629	8168629	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	C	8168629	G	C	8168629	3	2	14	1	0	0	0	0	1	0	0	0	11761	1183	41	4	2374	4	PFAS	17	8168629	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08		8168629	73026581	48	853											
AKAP8L	26993	broad.mit.edu;hgsc.bcm.edu	37	19	15491165	15491165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	T	15491165	C	T	15491165	3	4	14	1	0	0	0	0	1	0	0	0	458	623	22	2	235	2	AKAP8L	19	15491165	Missense_Mutation	SNP	C	TCGA-A3-3363-01A-01D-0966-08		15491165	43637818	49	854											
PRODH2	58510	broad.mit.edu;ucsc.edu	37	19	36303703	36303703	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	G	36303703	G	G	36303703	3	3	14	1	0	0	0	0	1	0	0	0	12559	304	11	3	1417	3	PRODH2	19	36303703	Missense_Mutation	SNP	A	TCGA-A3-3363-01A-01D-0966-08	20812538	36303703	22825280	50	855											
SRC	6714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	36024642	36024642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3363-01A-01D-0966-08	TCGA-A3-3363-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	34dac639-c2e5-447d-99c5-c6a3e15538fe	fecea611-a48c-4eb9-bd43-c8f829d9ddaf	A	36024642	G	A	36024642	3	1	14	1	0	0	0	0	1	0	0	0	15146	1174	41	2	649	2	SRC	20	36024642	Missense_Mutation	SNP	G	TCGA-A3-3363-01A-01D-0966-08		36024642	27000878	51	856											
DNAJC16	23341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	15855691	15855691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	C	15855691	T	C	15855691	3	2	15	1	0	0	0	0	1	0	0	0	4637	1406	49	3	93	3	DNAJC16	1	15855691	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08		15855691	233394930	1	857											
CYP4A11	1579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	47403749	47403749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	47403749	A	G	47403749	3	3	15	1	0	0	0	0	1	0	0	0	4185	188	7	3	1347	3	CYP4A11	1	47403749	Missense_Mutation	SNP	A	TCGA-A3-3365-01A-01D-0966-08	31548058	47403749	201846872	2	858											
BCAN	63827	hgsc.bcm.edu;ucsc.edu	37	1	156627509	156627509	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	-	156627509	C	-	156627509	7	5	15	1	0	1	0	1	0	0	0	0	1345	507	18	0	2364	0	BCAN	1	156627509	Frame_Shift_Del	DEL	C	TCGA-A3-3365-01A-01D-0966-08	109223760	156627509	92623112	3	859											
SIPA1L2	57568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	232650730	232650730	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	232650730	C	G	232650730	3	3	15	1	0	0	0	0	1	0	0	0	14343	565	20	4	4896	4	SIPA1L2	1	232650730	Missense_Mutation	SNP	C	TCGA-A3-3365-01A-01D-0966-08	76023221	232650730	16599891	4	860											
RTN4	57142	broad.mit.edu;ucsc.edu	37	2	55253832	55253832	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	55253832	G	G	55253832	3	3	15	1	0	0	0	0	1	0	0	0	13741	1725	60	5	2241	5	RTN4	2	55253832	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08		55253832	187945541	5	861											
EN1	2019	broad.mit.edu	37	2	119604102	119604103	+	Frame_Shift_Del	DEL	CG	-	-	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	-	119604103	-	-	119604102	7	5	15	1	0	1	0	1	0	0	0	0	5111	639	23	0	544	0	EN1	2	119604102	Frame_Shift_Del	DEL	CG	TCGA-A3-3365-01A-01D-0966-08	64350270	119604102	123595271	6	862											
FN1	2335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	216236992	216236992	+	Silent	SNP	C	C	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	A	216236992	C	A	216236992	2	1	15	1	0	0	0	0	0	0	0	1	5969	494	18	4		4	FN1	2	216236992	Silent	SNP	C	TCGA-A3-3365-01A-01D-0966-08	96632890	216236992	26962381	7	863											
PSMD6	9861	broad.mit.edu;hgsc.bcm.edu	37	3	64007994	64007994	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	64007994	T	G	64007994	3	3	15	1	0	0	0	0	1	0	0	0	12712	1623	56	5	846	5	PSMD6	3	64007994	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08		64007994	134014436	8	864											
SLC9A9	285195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	143297454	143297454	+	Silent	SNP	C	C	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	A	143297454	C	A	143297454	2	1	15	1	0	0	0	0	0	0	0	1	14734	494	18	4		4	SLC9A9	3	143297454	Silent	SNP	C	TCGA-A3-3365-01A-01D-0966-08	79289460	143297454	54724976	9	865											
GAK	2580	broad.mit.edu;ucsc.edu	37	4	843678	843678	+	Splice_Site	SNP	A	G	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	843678	G	G	843678	5	3	15	1	0	0	0	0	0	0	1	0	6202	173	6	3	107	3	GAK	4	843678	Splice_Site	SNP	A	TCGA-A3-3365-01A-01D-0966-08		843678	190310598	10	866											
GAK	2580	hgsc.bcm.edu	37	4	884397	884397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	C	884397	T	C	884397	3	2	15	1	0	0	0	0	1	0	0	0	6202	1493	52	3	3007	3	GAK	4	884397	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08	40719	884397	190269879	11	867											
COPS4	51138	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83970374	83970374	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	A	83970374	C	A	83970374	4	1	15	1	0	0	0	0	0	1	0	0	3737	718	25	4	220	4	COPS4	4	83970374	Nonsense_Mutation	SNP	C	TCGA-A3-3365-01A-01D-0966-08	83085977	83970374	107183902	12	868											
PTPN13	5783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87653571	87653571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	C	87653571	T	C	87653571	3	2	15	1	0	0	0	0	1	0	0	0	12793	1725	60	3	1665	3	PTPN13	4	87653571	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08	3683197	87653571	103500705	13	869											
ADAMTS16	170690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	5209271	5209271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	T	5209271	A	T	5209271	3	4	15	1	0	0	0	0	1	0	0	0	261	14	1	5	1555	5	ADAMTS16	5	5209271	Missense_Mutation	SNP	A	TCGA-A3-3365-01A-01D-0966-08		5209271	175705989	14	870											
MYO10	4651	broad.mit.edu	37	5	16671643	16671643	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	C	16671643	C	C	16671643	3	2	15	1	0	0	0	0	1	0	0	0	10069	1203	42	4	874	4	MYO10	5	16671643	Missense_Mutation	SNP	G	TCGA-A3-3365-01A-01D-0966-08	11462372	16671643	164243617	15	871											
CAMLG	819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134079711	134079711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	T	134079711	C	T	134079711	3	4	15	1	0	0	0	0	1	0	0	0	2611	768	27	1	678	1	CAMLG	5	134079711	Missense_Mutation	SNP	C	TCGA-A3-3365-01A-01D-0966-08	117408068	134079711	46835549	16	872											
PCDHGC5	56097	broad.mit.edu;ucsc.edu	37	5	140869551	140869551	+	Silent	SNP	T	A	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	A	140869551	A	A	140869551	2	1	15	1	0	0	0	0	0	0	0	1	11578	1683	59	5		5	PCDHGC5	5	140869551	Silent	SNP	T	TCGA-A3-3365-01A-01D-0966-08	6789840	140869551	40045709	17	873											
JAKMIP2	9832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147009293	147009293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	147009293	T	G	147009293	3	3	15	1	0	0	0	0	1	0	0	0	7948	1435	50	5	568	5	JAKMIP2	5	147009293	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08	6139742	147009293	33905967	18	874											
ZNF292	23036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	87966445	87966445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	A	87966445	T	A	87966445	3	1	15	1	0	0	0	0	1	0	0	0	17838	1696	59	5	3128	5	ZNF292	6	87966445	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08		87966445	83148622	19	875											
GPR126	57211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	142691426	142691426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	A	142691426	G	A	142691426	3	1	15	1	0	0	0	0	1	0	0	0	6647	971	34	2	579	2	GPR126	6	142691426	Missense_Mutation	SNP	G	TCGA-A3-3365-01A-01D-0966-08	54724981	142691426	28423641	20	876											
BAZ1B	9031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	72856668	72856668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	72856668	A	G	72856668	3	3	15	1	0	0	0	0	1	0	0	0	1330	159	6	3	145	3	BAZ1B	7	72856668	Missense_Mutation	SNP	A	TCGA-A3-3365-01A-01D-0966-08		72856668	86281995	21	877											
ZAN	7455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100361427	100361427	+	Splice_Site	SNP	A	A	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	100361427	A	G	100361427	5	3	15	1	0	0	0	0	0	0	1	0	17525	202	7	3	4063	3	ZAN	7	100361427	Splice_Site	SNP	A	TCGA-A3-3365-01A-01D-0966-08	27504759	100361427	58777236	22	878											
NFIB	4781	hgsc.bcm.edu;ucsc.edu	37	9	14307384	14307385	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	-	14307385	CT	-	14307384	7	5	15	1	0	1	0	1	0	0	0	0	10378	797	28	0	1128	0	NFIB	9	14307384	Frame_Shift_Del	DEL	CT	TCGA-A3-3365-01A-01D-0966-08		14307384	126906047	23	879											
CBARA1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	74128087	74128087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	74128087	A	G	74128087	3	3	15	1	0	0	0	0	1	0	0	0	2698	101	4	3	137	3	CBARA1	10	74128087	Missense_Mutation	SNP	A	TCGA-A3-3365-01A-01D-0966-08		74128087	61406660	24	880											
ANKRD42	338699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	82905759	82905759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	T	82905759	C	T	82905759	3	4	15	1	0	0	0	0	1	0	0	0	670	565	20	2	49	2	ANKRD42	11	82905759	Missense_Mutation	SNP	C	TCGA-A3-3365-01A-01D-0966-08		82905759	52100757	25	881											
SIK2	23235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111591712	111591712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	C	111591712	A	C	111591712	3	2	15	1	0	0	0	0	1	0	0	0	14331	101	4	5	1916	5	SIK2	11	111591712	Missense_Mutation	SNP	A	TCGA-A3-3365-01A-01D-0966-08	28685953	111591712	23414804	26	882											
MLL2	8085	broad.mit.edu;ucsc.edu	37	12	49447312	49447312	+	Silent	SNP	G	A	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	A	49447312	A	A	49447312	2	1	15	1	0	0	0	0	0	0	0	1	9628	1219	43	2		2	MLL2	12	49447312	Silent	SNP	G	TCGA-A3-3365-01A-01D-0966-08		49447312	84404583	27	883	13	2									
MLL2	8085	broad.mit.edu;ucsc.edu	37	12	49447313	49447313	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq;PacBio			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	T	49447313	T	T	49447313	3	4	15	1	0	0	0	0	1	0	0	0	9628	1203	42	4	16024	4	MLL2	12	49447313	Missense_Mutation	SNP	G	TCGA-A3-3365-01A-01D-0966-08	1	49447313	84404582	28	884	13	2									
EFHA1	221154	broad.mit.edu	37	13	22067484	22067484	+	Silent	SNP	T	C	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	C	22067484	C	C	22067484	2	2	15	1	0	0	0	0	0	0	0	1	4945	1722	60	3		3	EFHA1	13	22067484	Silent	SNP	T	TCGA-A3-3365-01A-01D-0966-08		22067484	93102394	29	885											
BRCA2	675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32910986	32910986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	A	32910986	G	A	32910986	3	1	15	1	0	0	0	0	1	0	0	0	1501	1291	45	2	2532	2	BRCA2	13	32910986	Missense_Mutation	SNP	G	TCGA-A3-3365-01A-01D-0966-08	10843502	32910986	82258892	30	886											
ITM2B	9445	hgsc.bcm.edu	37	13	48835350	48835350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	48835350	T	G	48835350	3	3	15	1	0	0	0	0	1	0	0	0	7920	1493	52	5	813	5	ITM2B	13	48835350	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08	15924364	48835350	66334528	31	887											
JKAMP	51528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	59954452	59954452	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	59954452	C	G	59954452	3	3	15	1	0	0	0	0	1	0	0	0	7956	855	30	4	167	4	JKAMP	14	59954452	Missense_Mutation	SNP	C	TCGA-A3-3365-01A-01D-0966-08		59954452	47395088	32	888											
GSPT1	2935	broad.mit.edu	37	16	11984971	11984971	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	-	11984971	-	-	11984971	7	5	15	1	0	1	0	1	0	0	0	0	6833	1608	56	0	1229	0	GSPT1	16	11984971	Frame_Shift_Del	DEL	T	TCGA-A3-3365-01A-01D-0966-08		11984971	78369782	33	889											
JUP	3728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39919273	39919273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	39919273	T	G	39919273	3	3	15	1	0	0	0	0	1	0	0	0	7979	1792	62	5	806	5	JUP	17	39919273	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08		39919273	41275937	34	890											
SGCA	6442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48252717	48252717	+	Silent	SNP	C	C	G	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	G	48252717	C	G	48252717	2	3	15	1	0	0	0	0	0	0	0	1	14212	581	21	4		4	SGCA	17	48252717	Silent	SNP	C	TCGA-A3-3365-01A-01D-0966-08	8333444	48252717	32942493	35	891											
CBLC	23624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45284600	45284600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	C	45284600	G	C	45284600	3	2	15	1	0	0	0	0	1	0	0	0	2704	1145	40	4	647	4	CBLC	19	45284600	Missense_Mutation	SNP	G	TCGA-A3-3365-01A-01D-0966-08		45284600	13844383	36	892											
ZNF324B	388569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58967919	58967919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	A	58967919	C	A	58967919	3	1	15	1	0	0	0	0	1	0	0	0	17857	738	26	4	1618	4	ZNF324B	19	58967919	Missense_Mutation	SNP	C	TCGA-A3-3365-01A-01D-0966-08	13683319	58967919	161064	37	893											
VAPB	9217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	57015985	57015985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	C	57015985	T	C	57015985	3	2	15	1	0	0	0	0	1	0	0	0	17134	1493	52	3	437	3	VAPB	20	57015985	Missense_Mutation	SNP	T	TCGA-A3-3365-01A-01D-0966-08		57015985	6009535	38	894											
BID	637	broad.mit.edu;hgsc.bcm.edu	37	22	18220987	18220987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	C	18220987	G	C	18220987	3	2	15	1	0	0	0	0	1	0	0	0	1430	1368	48	4	223	4	BID	22	18220987	Missense_Mutation	SNP	G	TCGA-A3-3365-01A-01D-0966-08		18220987	33083579	39	895											
L1CAM	3897	broad.mit.edu	37	X	153135050	153135050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3365-01A-01D-0966-08	TCGA-A3-3365-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5062d743-a97a-4586-9567-19eeae9aceca	36b9ccc1-3562-4b95-92ce-4bc4ea3f3d81	T	153135050	T	T	153135050	3	4	15	1	0	0	0	0	1	0	0	0	8595	826	29	2	2657	2	L1CAM	23	153135050	Missense_Mutation	SNP	C	TCGA-A3-3365-01A-01D-0966-08		153135050	2135510	40	896											
VHL	7428	hgsc.bcm.edu	37	3	10183872	10183872	+	Splice_Site	SNP	G	G	A	novel		TCGA-A3-3365-01A-01W-0898-10	TCGA-A3-3365-11A-01W-0898-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq	.	.	PacBio RS	7dba232b-ab48-41ce-a119-dc32fca0bc02	50cddd20-179b-4139-8615-1ea1213d84b4	A	10183872	G	A	10183872	5	1	16	1	0	0	0	0	0	0	1	0	17174	1275	44	2	343	2	VHL	3	10183872	Splice_Site	SNP	G	TCGA-A3-3365-01A-01W-0898-10		10183872	187838558	1	897											
RPL22	6146	broad.mit.edu;hgsc.bcm.edu	37	1	6246862	6246862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	6246862	A	G	6246862	3	3	17	1	0	0	0	0	1	0	0	0	13581	304	11	3	133	3	RPL22	1	6246862	Missense_Mutation	SNP	A	TCGA-A3-3367-01A-02D-1421-08		6246862	243003759	1	898											
EPHA2	1969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16458586	16458586	+	Silent	SNP	G	G	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	16458586	G	A	16458586	2	1	17	1	0	0	0	0	0	0	0	1	5169	1136	40	1		1	EPHA2	1	16458586	Silent	SNP	G	TCGA-A3-3367-01A-02D-1421-08	10211724	16458586	232792035	2	899											
SNX7	51375	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	99156689	99156689	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	99156689	T	A	99156689	3	1	17	1	0	0	0	0	1	0	0	0	14920	1783	62	5	432	5	SNX7	1	99156689	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08	82698103	99156689	150093932	3	900											
OLFML3	56944	hgsc.bcm.edu	37	1	114522961	114522962	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	114522962	-	G	114522961	7	5	17	1	0	1	1	0	0	0	0	0	10866	1580	55	0	128	0	OLFML3	1	114522961	Frame_Shift_Ins	INS	-	TCGA-A3-3367-01A-02D-1421-08	15366272	114522961	134727660	4	901											
RC3H1	149041	hgsc.bcm.edu;ucsc.edu	37	1	173950062	173950074	+	Frame_Shift_Del	DEL	GAGTCATGTTCTC	GAGTCATGTTCTC	-	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	GAGTCATGTTCTC	GAGTCATGTTCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	-	173950074	GAGTCATGTTCTC	-	173950062	7	5	17	1	0	1	0	1	0	0	0	0	13179	1174	41	0	2607	0	RC3H1	1	173950062	Frame_Shift_Del	DEL	GAGTCATGTTCTC	TCGA-A3-3367-01A-02D-1421-08	59427101	173950062	75300559	5	902											
KIF21B	23046	hgsc.bcm.edu;ucsc.edu	37	1	200956041	200956046	+	In_Frame_Del	DEL	CTAGGG	CTAGGG	-	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	CTAGGG	CTAGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	-	200956046	CTAGGG	-	200956041	7	5	17	1	0	1	0	1	0	0	0	0	8296	681	24	0	1290	0	KIF21B	1	200956041	In_Frame_Del	DEL	CTAGGG	TCGA-A3-3367-01A-02D-1421-08	27005979	200956041	48294580	6	903											
SRP9	6726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	225971002	225971002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	225971002	G	A	225971002	3	1	17	1	0	0	0	0	1	0	0	0	15170	1217	42	2	79	2	SRP9	1	225971002	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08	25014961	225971002	23279619	7	904											
ZP4	57829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	238048491	238048491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	238048491	C	A	238048491	3	1	17	1	0	0	0	0	1	0	0	0	18230	565	20	4	353	4	ZP4	1	238048491	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	12077489	238048491	11202130	8	905											
GREB1	9687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11772090	11772090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	11772090	A	G	11772090	3	3	17	1	0	0	0	0	1	0	0	0	6767	217	8	3	4877	3	GREB1	2	11772090	Missense_Mutation	SNP	A	TCGA-A3-3367-01A-02D-1421-08		11772090	231427283	9	906											
CHRNA1	1134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	175614794	175614794	+	Silent	SNP	A	A	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	175614794	A	G	175614794	2	3	17	1	0	0	0	0	0	0	0	1	3383	126	5	3		3	CHRNA1	2	175614794	Silent	SNP	A	TCGA-A3-3367-01A-02D-1421-08	163842704	175614794	67584579	10	907											
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238249699	238249699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	238249699	C	T	238249699	3	4	17	1	0	0	0	0	1	0	0	0	3703	594	21	2	1701	2	COL6A3	2	238249699	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	62634905	238249699	4949674	11	908											
CXCR6	10663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	45988808	45988808	+	Silent	SNP	C	C	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	45988808	C	T	45988808	2	4	17	1	0	0	0	0	0	0	0	1	4097	680	24	2		2	CXCR6	3	45988808	Silent	SNP	C	TCGA-A3-3367-01A-02D-1421-08		45988808	152033622	12	909											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52651339	52651339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	52651339	A	G	52651339	3	3	17	1	0	0	0	0	1	0	0	0	11498	217	8	3	3211	3	PBRM1	3	52651339	Missense_Mutation	SNP	A	TCGA-A3-3367-01A-02D-1421-08	6662531	52651339	145371091	13	910											
COL6A6	131873	hgsc.bcm.edu;ucsc.edu	37	3	130286060	130286063	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	GAAA	GAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	-	130286063	GAAA	-	130286060	7	5	17	1	0	1	0	1	0	0	0	0	3705	1281	45	0	1811	0	COL6A6	3	130286060	Frame_Shift_Del	DEL	GAAA	TCGA-A3-3367-01A-02D-1421-08	77634721	130286060	67736370	14	911											
MME	4311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	154862150	154862150	+	Silent	SNP	C	C	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	154862150	C	A	154862150	2	1	17	1	0	0	0	0	0	0	0	1	9652	871	31	4		4	MME	3	154862150	Silent	SNP	C	TCGA-A3-3367-01A-02D-1421-08	24576090	154862150	43160280	15	912											
UGT2A3	79799	broad.mit.edu;hgsc.bcm.edu	37	4	69817503	69817503	+	RNA	SNP	T	T	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	69817503	T	A	69817503	1	1	17	0	1	0	0	0	0	0	0	0	16967	1450	50	5		5	UGT2A3	4	69817503	RNA	SNP	T	TCGA-A3-3367-01A-02D-1421-08		69817503	121336773	16	913											
NUDT6	11162	broad.mit.edu	37	4	123843511	123843511	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	123843511	T	T	123843511	3	4	17	1	0	0	0	0	1	0	0	0	10750	768	27	1	753	1	NUDT6	4	123843511	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	54026008	123843511	67310765	17	914											
IL3	3562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131396700	131396700	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	131396700	T	A	131396700	3	1	17	1	0	0	0	0	1	0	0	0	7696	1478	51	5	209	5	IL3	5	131396700	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08		131396700	49518560	18	915											
PPP2R2B	5521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	146236091	146236091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	146236091	T	A	146236091	3	1	17	1	0	0	0	0	1	0	0	0	12395	1406	49	5	1326	5	PPP2R2B	5	146236091	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08	14839391	146236091	34679169	19	916											
GM2A	2760	broad.mit.edu	37	5	150646946	150646946	+	Silent	SNP	C	T	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	150646946	T	T	150646946	2	4	17	1	0	0	0	0	0	0	0	1	6491	767	27	1		1	GM2A	5	150646946	Silent	SNP	C	TCGA-A3-3367-01A-02D-1421-08	4410855	150646946	30268314	20	917											
C6orf222	389384	broad.mit.edu;ucsc.edu	37	6	36294388	36294388	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	36294388	T	T	36294388	3	4	17	1	0	0	0	0	1	0	0	0	2358	623	22	2	1055	2	C6orf222	6	36294388	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08		36294388	134820679	21	918											
BACH2	60468	broad.mit.edu	37	6	90660625	90660625	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	90660625	A	A	90660625	3	1	17	1	0	0	0	0	1	0	0	0	1284	680	24	4	1337	4	BACH2	6	90660625	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	54366237	90660625	80454442	22	919											
MCHR2	84539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	100395756	100395756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	100395756	G	T	100395756	3	4	17	1	0	0	0	0	1	0	0	0	9390	1357	47	4	764	4	MCHR2	6	100395756	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08	9735131	100395756	70719311	23	920											
STAG3L2	442582	broad.mit.edu	37	7	74299903	74299903	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	-	74299903	-	-	74299903	7	5	17	1	0	1	0	1	0	0	0	0	15257	797	28	0	22	0	STAG3L2	7	74299903	Frame_Shift_Del	DEL	C	TCGA-A3-3367-01A-02D-1421-08		74299903	84838760	24	921											
MTUS1	57509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17612685	17612685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	17612685	G	T	17612685	3	4	17	1	0	0	0	0	1	0	0	0	9972	1174	41	4	3555	4	MTUS1	8	17612685	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08		17612685	128751337	25	922											
CLVS1	157807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	62212689	62212689	+	Silent	SNP	C	C	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	62212689	C	T	62212689	2	4	17	1	0	0	0	0	0	0	0	1	3573	726	26	2		2	CLVS1	8	62212689	Silent	SNP	C	TCGA-A3-3367-01A-02D-1421-08	44600004	62212689	84151333	26	923											
FAM82B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	87500826	87500826	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	87500826	C	G	87500826	3	3	17	1	0	0	0	0	1	0	0	0	5639	855	30	4	686	4	FAM82B	8	87500826	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	25288137	87500826	58863196	27	924											
KLHL38	340359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	124664647	124664647	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	124664647	C	G	124664647	3	3	17	1	0	0	0	0	1	0	0	0	8397	864	30	4	1237	4	KLHL38	8	124664647	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	37163821	124664647	21699375	28	925											
FAM75A6	0	broad.mit.edu	37	9	43627074	43627074	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	C	43627074	C	C	43627074	3	2	17	1	0	0	0	0	1	0	0	0	5629	1696	59	3	2422	3	FAM75A6	9	43627074	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08		43627074	97586357	29	926											
GBGT1	26301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136029294	136029294	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	136029294	C	G	136029294	3	3	17	1	0	0	0	0	1	0	0	0	6279	564	20	4	333	4	GBGT1	9	136029294	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	92402220	136029294	5184137	30	927											
ATP5C1	509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	7839091	7839091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	7839091	G	T	7839091	3	4	17	1	0	0	0	0	1	0	0	0	1149	1058	37	4	183	4	ATP5C1	10	7839091	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08		7839091	127695656	31	928											
ARMC4	55130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	28233812	28233812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	28233812	G	T	28233812	3	4	17	1	0	0	0	0	1	0	0	0	953	1203	42	4	1708	4	ARMC4	10	28233812	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08	20394721	28233812	107300935	32	929											
JMJD1C	221037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	64936178	64936178	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	64936178	T	A	64936178	3	1	17	1	0	0	0	0	1	0	0	0	7957	1812	63	5	354	5	JMJD1C	10	64936178	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08	36702366	64936178	70598569	33	930											
CDH23	64072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	73544690	73544690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	73544690	C	T	73544690	3	4	17	1	0	0	0	0	1	0	0	0	3110	623	22	2	6056	2	CDH23	10	73544690	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	8608512	73544690	61990057	34	931											
ABCC8	6833	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	17418564	17418564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	17418564	C	G	17418564	3	3	17	1	0	0	0	0	1	0	0	0	58	913	32	4	755	4	ABCC8	11	17418564	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08		17418564	117587952	35	932											
CAT	847	hgsc.bcm.edu;ucsc.edu	37	11	34489943	34489946	+	Frame_Shift_Del	DEL	GTGA	GTGA	-	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	GTGA	GTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	-	34489946	GTGA	-	34489943	7	5	17	1	0	1	0	1	0	0	0	0	2688	1275	44	0	1477	0	CAT	11	34489943	Frame_Shift_Del	DEL	GTGA	TCGA-A3-3367-01A-02D-1421-08	17071379	34489943	100516573	36	933											
FNBP4	23360	hgsc.bcm.edu	37	11	47774573	47774573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	47774573	G	A	47774573	3	1	17	1	0	0	0	0	1	0	0	0	5974	1203	42	2	2577	2	FNBP4	11	47774573	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08	13284630	47774573	87231943	37	934											
GANAB	23193	broad.mit.edu;ucsc.edu	37	11	62396249	62396249	+	Silent	SNP	A	G	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	62396249	G	G	62396249	2	3	17	1	0	0	0	0	0	0	0	1	6240	175	7	3		3	GANAB	11	62396249	Silent	SNP	A	TCGA-A3-3367-01A-02D-1421-08	14621676	62396249	72610267	38	935											
SLC22A8	9376	hgsc.bcm.edu;ucsc.edu	37	11	62762194	62762195	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	62762195	-	A	62762194	7	5	17	1	0	1	1	0	0	0	0	0	14473	1406	49	0	608	0	SLC22A8	11	62762194	Frame_Shift_Ins	INS	-	TCGA-A3-3367-01A-02D-1421-08	365945	62762194	72244322	39	936											
ANO1	55107	broad.mit.edu;ucsc.edu	37	11	70017113	70017113	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	70017113	A	A	70017113	3	1	17	1	0	0	0	0	1	0	0	0	695	1058	37	1	2404	1	ANO1	11	70017113	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08	7254919	70017113	64989403	40	937											
ANO1	55107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	70031793	70031793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	70031793	G	A	70031793	3	1	17	1	0	0	0	0	1	0	0	0	695	1145	40	1	2784	1	ANO1	11	70031793	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08	14680	70031793	64974723	41	938											
MAP6	4135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	75298336	75298336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	C	75298336	T	C	75298336	3	2	17	1	0	0	0	0	1	0	0	0	9271	1493	52	3	235	3	MAP6	11	75298336	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08	5266543	75298336	59708180	42	939											
EXPH5	23086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108381263	108381263	+	Silent	SNP	G	G	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	108381263	G	A	108381263	2	1	17	1	0	0	0	0	0	0	0	1	5324	1310	46	2		2	EXPH5	11	108381263	Silent	SNP	G	TCGA-A3-3367-01A-02D-1421-08	33082927	108381263	26625253	43	940											
LAYN	143903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111431066	111431066	+	Silent	SNP	G	G	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	111431066	G	A	111431066	2	1	17	1	0	0	0	0	0	0	0	1	8656	1277	45	2		2	LAYN	11	111431066	Silent	SNP	G	TCGA-A3-3367-01A-02D-1421-08	3049803	111431066	23575450	44	941											
GPHN	10243	hgsc.bcm.edu;ucsc.edu	37	14	67390942	67390943	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	C	67390943	-	C	67390942	7	5	17	1	0	1	1	0	0	0	0	0	6617	1667	58	0	791	0	GPHN	14	67390942	Frame_Shift_Ins	INS	-	TCGA-A3-3367-01A-02D-1421-08		67390942	39958598	45	942											
PGF	5228	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75416059	75416059	+	Splice_Site	SNP	C	C	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	75416059	C	T	75416059	5	4	17	1	0	0	0	0	0	0	1	0	11795	521	18	2	216	2	PGF	14	75416059	Splice_Site	SNP	C	TCGA-A3-3367-01A-02D-1421-08	8025117	75416059	31933481	46	943											
ONECUT1	3175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	53081592	53081592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	53081592	G	T	53081592	3	4	17	1	0	0	0	0	1	0	0	0	10875	1000	35	4	915	4	ONECUT1	15	53081592	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08		53081592	49449800	47	944											
SH2D7	646892	broad.mit.edu	37	15	78393441	78393441	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	78393441	T	T	78393441	3	4	17	1	0	0	0	0	1	0	0	0	14252	1165	41	4	864	4	SH2D7	15	78393441	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08	25311849	78393441	24137951	48	945											
NMRAL1	57407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4511892	4511892	+	Silent	SNP	G	G	A	rs1043380		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	4511892	G	A	4511892	2	1	17	1	0	0	0	0	0	0	0	1	10508	933	33	2		2	NMRAL1	16	4511892	Silent	SNP	G	TCGA-A3-3367-01A-02D-1421-08		4511892	85842861	49	946											
DNAH3	55567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	21147728	21147728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	21147728	G	A	21147728	3	1	17	1	0	0	0	0	1	0	0	0	4605	1145	40	1	11774	1	DNAH3	16	21147728	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08	16635836	21147728	69207025	50	947											
CHRNB1	1140	hgsc.bcm.edu;ucsc.edu	37	17	7350241	7350245	+	Frame_Shift_Del	DEL	TGACG	TGACG	-	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	TGACG	TGACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	-	7350245	TGACG	-	7350241	7	5	17	1	0	1	0	1	0	0	0	0	3392	1567	55	0	347	0	CHRNB1	17	7350241	Frame_Shift_Del	DEL	TGACG	TCGA-A3-3367-01A-02D-1421-08		7350241	73844969	51	948											
ALOX15B	247	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7942501	7942501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	7942501	A	G	7942501	3	3	17	1	0	0	0	0	1	0	0	0	539	159	6	3	30	3	ALOX15B	17	7942501	Missense_Mutation	SNP	A	TCGA-A3-3367-01A-02D-1421-08	592260	7942501	73252709	52	949											
PIRT	644139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10728814	10728814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	10728814	T	A	10728814	3	1	17	1	0	0	0	0	1	0	0	0	11952	1783	62	5	268	5	PIRT	17	10728814	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08	2786313	10728814	70466396	53	950											
AOC3	8639	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41004871	41004871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	41004871	C	A	41004871	3	1	17	1	0	0	0	0	1	0	0	0	728	565	20	4	1513	4	AOC3	17	41004871	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	30276057	41004871	40190339	54	951											
DBF4B	80174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42828502	42828502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	42828502	G	A	42828502	3	1	17	1	0	0	0	0	1	0	0	0	4251	1319	46	2	1828	2	DBF4B	17	42828502	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08	1823631	42828502	38366708	55	952											
ROCK1	6093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	18549140	18549140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	18549140	T	G	18549140	3	3	17	1	0	0	0	0	1	0	0	0	13530	1606	56	5	1254	5	ROCK1	18	18549140	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08		18549140	59528108	56	953											
DSG1	1828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	28898303	28898303	+	Missense_Mutation	SNP	A	A	G	rs141269991	byfrequency;alternate_allele	TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	28898303	A	G	28898303	3	3	17	1	0	0	0	0	1	0	0	0	4778	217	8	3	42	3	DSG1	18	28898303	Missense_Mutation	SNP	A	TCGA-A3-3367-01A-02D-1421-08	10349163	28898303	49178945	57	954											
CDH7	1005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	63547734	63547734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	63547734	T	A	63547734	3	1	17	1	0	0	0	0	1	0	0	0	3117	1461	51	5	2004	5	CDH7	18	63547734	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08	34649431	63547734	14529514	58	955											
HMHA1	23526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1074198	1074198	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	1074198	A	T	1074198	3	4	17	1	0	0	0	0	1	0	0	0	7247	217	8	5	912	5	HMHA1	19	1074198	Missense_Mutation	SNP	A	TCGA-A3-3367-01A-02D-1421-08		1074198	58054785	59	956											
ZNF333	84449	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14829357	14829357	+	Silent	SNP	C	C	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	14829357	C	T	14829357	2	4	17	1	0	0	0	0	0	0	0	1	17862	668	24	2		2	ZNF333	19	14829357	Silent	SNP	C	TCGA-A3-3367-01A-02D-1421-08	13755159	14829357	44299626	60	957											
NDUFA13	51079	broad.mit.edu	37	19	19627139	19627139	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	19627139	T	T	19627139	3	4	17	1	0	0	0	0	1	0	0	0	10270	893	31	1	94	1	NDUFA13	19	19627139	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	4797782	19627139	39501844	61	958											
ZNF91	7644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	23545331	23545331	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	23545331	C	G	23545331	3	3	17	1	0	0	0	0	1	0	0	0	18212	912	32	4	3129	4	ZNF91	19	23545331	Missense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	3918192	23545331	35583652	62	959											
NUP62	23636	hgsc.bcm.edu	37	19	50411672	50411673	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	50411673	-	G	50411672	7	5	17	1	0	1	1	0	0	0	0	0	10775	768	27	0	179	0	NUP62	19	50411672	Frame_Shift_Ins	INS	-	TCGA-A3-3367-01A-02D-1421-08	26866341	50411672	8717311	63	960											
SIGLEC8	27181	hgsc.bcm.edu;ucsc.edu	37	19	51957520	51957520	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	-	51957520	C	-	51957520	7	5	17	1	0	1	0	1	0	0	0	0	14327	855	30	0	309	0	SIGLEC8	19	51957520	Frame_Shift_Del	DEL	C	TCGA-A3-3367-01A-02D-1421-08	1545848	51957520	7171463	64	961											
NLRP9	338321	broad.mit.edu;hgsc.bcm.edu	37	19	56244059	56244059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	56244059	T	A	56244059	3	1	17	1	0	0	0	0	1	0	0	0	10491	1609	56	5	1869	5	NLRP9	19	56244059	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08	4286539	56244059	2884924	65	962											
ZNF584	201514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58921394	58921394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	58921394	T	G	58921394	3	3	17	1	0	0	0	0	1	0	0	0	18028	1461	51	5	111	5	ZNF584	19	58921394	Missense_Mutation	SNP	T	TCGA-A3-3367-01A-02D-1421-08	2677335	58921394	207589	66	963											
RASSF2	9770	broad.mit.edu	37	20	4771138	4771138	+	Missense_Mutation	SNP	G	A	A	rs147789166	bycluster;by1000genomes	TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	4771138	A	A	4771138	3	1	17	1	0	0	0	0	1	0	0	0	13099	1145	40	1	508	1	RASSF2	20	4771138	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08		4771138	58254382	67	964											
ZNF341	84905	broad.mit.edu;hgsc.bcm.edu	37	20	32379290	32379290	+	Silent	SNP	C	C	T	rs148919836		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	32379290	C	T	32379290	2	4	17	1	0	0	0	0	0	0	0	1	17869	871	31	1		1	ZNF341	20	32379290	Silent	SNP	C	TCGA-A3-3367-01A-02D-1421-08	27608152	32379290	30646230	68	965											
MYT1	4661	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62850364	62850364	+	Silent	SNP	G	G	A	rs142303893		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	62850364	G	A	62850364	2	1	17	1	0	0	0	0	0	0	0	1	10113	1045	37	1		1	MYT1	20	62850364	Silent	SNP	G	TCGA-A3-3367-01A-02D-1421-08	30471074	62850364	175156	69	966											
GNB1L	54584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	19776236	19776236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	T	19776236	G	T	19776236	3	4	17	1	0	0	0	0	1	0	0	0	6523	1319	46	4	7	4	GNB1L	22	19776236	Missense_Mutation	SNP	G	TCGA-A3-3367-01A-02D-1421-08		19776236	31528330	70	967											
MYH9	4627	broad.mit.edu;ucsc.edu	37	22	36723503	36723504	+	Splice_Site	INS	-	A	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	36723504	A	A	36723503	8	5	17	1	0	1	1	0	0	0	1	0	10049	1769	61	0		0	MYH9	22	36723503	Splice_Site	INS	-	TCGA-A3-3367-01A-02D-1421-08	16947267	36723503	14581063	71	968											
SH3KBP1	30011	hgsc.bcm.edu	37	X	19560246	19560247	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	G	19560247	-	G	19560246	7	5	17	1	0	1	1	0	0	0	0	0	14268	1567	55	0	320	0	SH3KBP1	23	19560246	Frame_Shift_Ins	INS	-	TCGA-A3-3367-01A-02D-1421-08		19560246	135710314	72	969											
KLHL15	80311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	24006422	24006422	+	Silent	SNP	C	C	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	24006422	C	A	24006422	2	1	17	1	0	0	0	0	0	0	0	1	8378	871	31	4		4	KLHL15	23	24006422	Silent	SNP	C	TCGA-A3-3367-01A-02D-1421-08	4446176	24006422	131264138	73	970											
FRMD7	90167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	131234681	131234681	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3367-01A-02D-1421-08	TCGA-A3-3367-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	83a091b9-35cc-4f3b-9d5f-d699b79ac421	c0f55242-222d-4d61-bc5e-389f605e31bf	A	131234681	C	A	131234681	4	1	17	1	0	0	0	0	0	1	0	0	6062	864	30	4	2067	4	FRMD7	23	131234681	Nonsense_Mutation	SNP	C	TCGA-A3-3367-01A-02D-1421-08	107228259	131234681	24035879	74	971											
PRDX1	5052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	45984673	45984673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	G	45984673	A	G	45984673	3	3	18	1	0	0	0	0	1	0	0	0	12474	72	3	3	576	3	PRDX1	1	45984673	Missense_Mutation	SNP	A	TCGA-A3-3370-01A-02D-1421-08		45984673	203265948	1	972											
LRRC8B	23507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	90049715	90049715	+	Silent	SNP	C	C	T	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	90049715	C	T	90049715	2	4	18	1	0	0	0	0	0	0	0	1	9029	845	30	2		2	LRRC8B	1	90049715	Silent	SNP	C	TCGA-A3-3370-01A-02D-1421-08	44065042	90049715	159200906	2	973											
C2orf78	388960	broad.mit.edu;ucsc.edu	37	2	74043728	74043728	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	C	74043728	C	C	74043728	3	2	18	1	0	0	0	0	1	0	0	0	2197	130	5	5	2388	5	C2orf78	2	74043728	Missense_Mutation	SNP	A	TCGA-A3-3370-01A-02D-1421-08		74043728	169155645	3	974											
ZNF2	7549	hgsc.bcm.edu;ucsc.edu	37	2	95847736	95847736	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	-	95847736	A	-	95847736	7	5	18	1	0	1	0	1	0	0	0	0	17772	217	8	0	1177	0	ZNF2	2	95847736	Frame_Shift_Del	DEL	A	TCGA-A3-3370-01A-02D-1421-08	21804008	95847736	147351637	4	975											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141143576	141143576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	C	141143576	T	C	141143576	3	2	18	1	0	0	0	0	1	0	0	0	8962	1763	61	3	3482	3	LRP1B	2	141143576	Missense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08	45295840	141143576	102055797	5	976											
ALS2	57679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	202590152	202590152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	C	202590152	T	C	202590152	3	2	18	1	0	0	0	0	1	0	0	0	550	1821	63	3	1759	3	ALS2	2	202590152	Missense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08	61446576	202590152	40609221	6	977											
OSBPL10	114884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	31774806	31774806	+	Silent	SNP	G	G	T	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	31774806	G	T	31774806	2	4	18	1	0	0	0	0	0	0	0	1	11282	987	35	4		4	OSBPL10	3	31774806	Silent	SNP	G	TCGA-A3-3370-01A-02D-1421-08		31774806	166247624	7	978											
TBCK	93627	broad.mit.edu;hgsc.bcm.edu	37	4	107157650	107157650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	107157650	C	T	107157650	3	4	18	1	0	0	0	0	1	0	0	0	15648	797	28	2	1486	2	TBCK	4	107157650	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08		107157650	83996626	8	979											
SLC25A4	291	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	186066922	186066922	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	G	186066922	C	G	186066922	3	3	18	1	0	0	0	0	1	0	0	0	14517	681	24	4	618	4	SLC25A4	4	186066922	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08	78909272	186066922	5087354	9	980											
SNX18	112574	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	53814577	53814577	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	53814577	T	A	53814577	4	1	18	1	0	0	0	0	0	1	0	0	14902	1471	51	5	797	5	SNX18	5	53814577	Nonsense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08		53814577	127100683	10	981											
CRHBP	1393	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	76249908	76249908	+	Missense_Mutation	SNP	C	C	T	rs79810800		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	76249908	C	T	76249908	3	4	18	1	0	0	0	0	1	0	0	0	3872	652	23	1	240	1	CRHBP	5	76249908	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08	22435331	76249908	104665352	11	982											
SLC23A1	9963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	138707793	138707793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	138707793	C	A	138707793	3	1	18	1	0	0	0	0	1	0	0	0	14475	565	20	4	101	4	SLC23A1	5	138707793	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08	62457885	138707793	42207467	12	983											
PI16	221476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36922553	36922553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	36922553	G	T	36922553	3	4	18	1	0	0	0	0	1	0	0	0	11876	1029	36	4	19	4	PI16	6	36922553	Missense_Mutation	SNP	G	TCGA-A3-3370-01A-02D-1421-08		36922553	134192514	13	984											
REPS1	85021	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	139233902	139233902	+	Silent	SNP	C	C	T	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	139233902	C	T	139233902	2	4	18	1	0	0	0	0	0	0	0	1	13241	666	23	1		1	REPS1	6	139233902	Silent	SNP	C	TCGA-A3-3370-01A-02D-1421-08	102311349	139233902	31881165	14	985											
DDC	1644	broad.mit.edu	37	7	50607651	50607651	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	C	50607651	C	C	50607651	3	2	18	1	0	0	0	0	1	0	0	0	4327	1464	51	3	1213	3	DDC	7	50607651	Missense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08		50607651	108531012	15	986											
ABP1	26	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150554402	150554402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	C	150554402	T	C	150554402	3	2	18	1	0	0	0	0	1	0	0	0	98	1609	56	3	846	3	ABP1	7	150554402	Missense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08	99946751	150554402	8584261	16	987											
MLL3	58508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151879304	151879304	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	G	151879304	C	G	151879304	3	3	18	1	0	0	0	0	1	0	0	0	9629	565	20	4	9190	4	MLL3	7	151879304	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08	1324902	151879304	7259359	17	988											
MRPL15	29088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	55055338	55055338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	55055338	G	A	55055338	3	1	18	1	0	0	0	0	1	0	0	0	9787	942	33	2	559	2	MRPL15	8	55055338	Missense_Mutation	SNP	G	TCGA-A3-3370-01A-02D-1421-08		55055338	91308684	18	989											
CAMSAP1	157922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	138703212	138703212	+	Silent	SNP	G	G	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	138703212	G	A	138703212	2	1	18	1	0	0	0	0	0	0	0	1	2613	1252	44	2		2	CAMSAP1	9	138703212	Silent	SNP	G	TCGA-A3-3370-01A-02D-1421-08		138703212	2510219	19	990											
RSU1	6251	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	16737058	16737058	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	16737058	T	A	16737058	3	1	18	1	0	0	0	0	1	0	0	0	13729	1464	51	5	146	5	RSU1	10	16737058	Missense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08		16737058	118797689	20	991											
SORBS1	10580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	97135759	97135759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	G	97135759	A	G	97135759	3	3	18	1	0	0	0	0	1	0	0	0	14940	101	4	3	2294	3	SORBS1	10	97135759	Missense_Mutation	SNP	A	TCGA-A3-3370-01A-02D-1421-08	80398701	97135759	38398988	21	992											
COMMD9	29099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	36302301	36302301	+	Silent	SNP	T	T	G	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	G	36302301	T	G	36302301	2	3	18	1	0	0	0	0	0	0	0	1	3725	1451	51	5		5	COMMD9	11	36302301	Silent	SNP	T	TCGA-A3-3370-01A-02D-1421-08		36302301	98704215	22	993											
BTG1	694	broad.mit.edu;hgsc.bcm.edu	37	12	92539272	92539272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	92539272	C	T	92539272	3	4	18	1	0	0	0	0	1	0	0	0	1555	893	31	1	483	1	BTG1	12	92539272	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08		92539272	41312623	23	994											
POLE	5426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133220012	133220012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	G	133220012	C	G	133220012	3	3	18	1	0	0	0	0	1	0	0	0	12203	564	20	4	2499	4	POLE	12	133220012	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08	40680740	133220012	631883	24	995											
OR4K1	79544	broad.mit.edu;hgsc.bcm.edu	37	14	20403973	20403973	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	20403973	T	A	20403973	3	1	18	1	0	0	0	0	1	0	0	0	11074	1783	62	5	150	5	OR4K1	14	20403973	Missense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08		20403973	86945567	25	996											
OR4K1	79544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	20404157	20404157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	G	20404157	A	G	20404157	3	3	18	1	0	0	0	0	1	0	0	0	11074	304	11	3	334	3	OR4K1	14	20404157	Missense_Mutation	SNP	A	TCGA-A3-3370-01A-02D-1421-08	184	20404157	86945383	26	997											
AMN	81693	broad.mit.edu	37	14	103394801	103394801	+	Silent	SNP	A	T	T	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	103394801	T	T	103394801	2	4	18	1	0	0	0	0	0	0	0	1	580	291	11	5		5	AMN	14	103394801	Silent	SNP	A	TCGA-A3-3370-01A-02D-1421-08	82990644	103394801	3954739	27	998											
AP4E1	23431	hgsc.bcm.edu;ucsc.edu	37	15	51276219	51276221	+	Frame_Shift_Del	DEL	TTC	TTC	-	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	-	51276221	TTC	-	51276219	7	5	18	1	0	1	0	1	0	0	0	0	752	1739	60	0	2029	0	AP4E1	15	51276219	Frame_Shift_Del	DEL	TTC	TCGA-A3-3370-01A-02D-1421-08		51276219	51255173	28	999											
DMXL2	23312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51837940	51837940	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	C	51837940	A	C	51837940	4	2	18	1	0	0	0	0	0	1	0	0	4597	372	13	5	8487	5	DMXL2	15	51837940	Nonsense_Mutation	SNP	A	TCGA-A3-3370-01A-02D-1421-08	561721	51837940	50693452	29	1000											
LYSMD4	145748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	100269538	100269538	+	Silent	SNP	C	C	T	rs150607972		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	100269538	C	T	100269538	2	4	18	1	0	0	0	0	0	0	0	1	9134	813	29	2		2	LYSMD4	15	100269538	Silent	SNP	C	TCGA-A3-3370-01A-02D-1421-08	48431598	100269538	2261854	30	1001											
CACNG3	10368	broad.mit.edu;ucsc.edu	37	16	24268220	24268220	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	24268220	A	A	24268220	3	1	18	1	0	0	0	0	1	0	0	0	2560	1291	45	2	147	2	CACNG3	16	24268220	Missense_Mutation	SNP	G	TCGA-A3-3370-01A-02D-1421-08		24268220	66086533	31	1002											
NLRC5	84166	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57060312	57060312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	G	57060312	C	G	57060312	3	3	18	1	0	0	0	0	1	0	0	0	10477	797	28	4	1471	4	NLRC5	16	57060312	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08	32792092	57060312	33294441	32	1003											
SLFN11	91607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33679558	33679558	+	Silent	SNP	T	T	C	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	C	33679558	T	C	33679558	2	2	18	1	0	0	0	0	0	0	0	1	14746	1451	51	3		3	SLFN11	17	33679558	Silent	SNP	T	TCGA-A3-3370-01A-02D-1421-08		33679558	47515652	33	1004											
AOC2	314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40997011	40997011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	C	40997011	T	C	40997011	3	2	18	1	0	0	0	0	1	0	0	0	727	1435	50	3	370	3	AOC2	17	40997011	Missense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08	7317453	40997011	40198199	34	1005											
CLTC	1213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57737836	57737836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	57737836	G	A	57737836	3	1	18	1	0	0	0	0	1	0	0	0	3568	1203	42	2	1080	2	CLTC	17	57737836	Missense_Mutation	SNP	G	TCGA-A3-3370-01A-02D-1421-08	16740825	57737836	23457374	35	1006											
CCDC40	55036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78059827	78059827	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	78059827	T	A	78059827	3	1	18	1	0	0	0	0	1	0	0	0	2814	1609	56	5	2315	5	CCDC40	17	78059827	Missense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08	20321991	78059827	3135383	36	1007											
PAX1	5075	broad.mit.edu	37	20	21690005	21690005	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	T	21690005	T	T	21690005	3	4	18	1	0	0	0	0	1	0	0	0	11485	768	27	1	1219	1	PAX1	20	21690005	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08		21690005	41335515	37	1008											
SLC2A10	81031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	45355557	45355557	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	45355557	T	A	45355557	3	1	18	1	0	0	0	0	1	0	0	0	14552	1783	62	5	1353	5	SLC2A10	20	45355557	Missense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08	23665552	45355557	17669963	38	1009											
TIAM1	7074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	32638828	32638828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	32638828	G	A	32638828	3	1	18	1	0	0	0	0	1	0	0	0	15902	1174	41	2	4414	2	TIAM1	21	32638828	Missense_Mutation	SNP	G	TCGA-A3-3370-01A-02D-1421-08		32638828	15491067	39	1010											
SFRS15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	33043798	33043798	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	33043798	T	A	33043798	4	1	18	1	0	0	0	0	0	1	0	0	14184	1850	64	5	89	5	SFRS15	21	33043798	Nonsense_Mutation	SNP	T	TCGA-A3-3370-01A-02D-1421-08	404970	33043798	15086097	40	1011											
USP9X	8239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	41091721	41091721	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	G	41091721	C	G	41091721	3	3	18	1	0	0	0	0	1	0	0	0	17102	479	17	4	7831	4	USP9X	23	41091721	Missense_Mutation	SNP	C	TCGA-A3-3370-01A-02D-1421-08		41091721	114178839	41	1012											
MSN	4478	broad.mit.edu	37	X	64958995	64958995	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3370-01A-02D-1421-08	TCGA-A3-3370-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	21ce7121-87b4-4686-9bf6-aff71d8b2223	969705aa-a77d-4084-a692-59819d33068e	A	64958995	A	A	64958995	3	1	18	1	0	0	0	0	1	0	0	0	9892	1087	38	1	1554	1	MSN	23	64958995	Missense_Mutation	SNP	G	TCGA-A3-3370-01A-02D-1421-08	23867274	64958995	90311565	42	1013											
CD101	9398	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	117564261	117564261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	117564261	T	C	117564261	3	2	19	1	0	0	0	0	1	0	0	0	2964	1406	49	3	2110	3	CD101	1	117564261	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08		117564261	131686360	1	1014											
C1orf156	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169762230	169762230	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	169762230	T	G	169762230	3	3	19	1	0	0	0	0	1	0	0	0	2008	1406	49	5	515	5	C1orf156	1	169762230	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08	52197969	169762230	79488391	2	1015											
TMEM206	55248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	212538685	212538685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	212538685	G	T	212538685	3	4	19	1	0	0	0	0	1	0	0	0	16143	942	33	4	131	4	TMEM206	1	212538685	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08	42776455	212538685	36711936	3	1016											
NOL10	79954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	10811743	10811743	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	-	10811743	G	-	10811743	7	5	19	1	0	1	0	1	0	0	0	0	10527	1348	47	0	1729	0	NOL10	2	10811743	Frame_Shift_Del	DEL	G	TCGA-A3-3373-01A-02D-1421-08		10811743	232387630	4	1017											
SLC8A1	6546	broad.mit.edu;hgsc.bcm.edu	37	2	40342426	40342426	+	Silent	SNP	G	G	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	40342426	G	A	40342426	2	1	19	1	0	0	0	0	0	0	0	1	14719	1219	43	2		2	SLC8A1	2	40342426	Silent	SNP	G	TCGA-A3-3373-01A-02D-1421-08	29530683	40342426	202856947	5	1018											
EHBP1	23301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	63169917	63169917	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	63169917	G	A	63169917	4	1	19	1	0	0	0	0	0	1	0	0	4977	1357	47	2	1397	2	EHBP1	2	63169917	Nonsense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08	22827491	63169917	180029456	6	1019											
MBD5	55777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	149227852	149227852	+	Silent	SNP	T	T	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	149227852	T	G	149227852	2	3	19	1	0	0	0	0	0	0	0	1	9354	1799	63	5		5	MBD5	2	149227852	Silent	SNP	T	TCGA-A3-3373-01A-02D-1421-08	86057935	149227852	93971521	7	1020											
SCN1A	6323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	166898839	166898839	+	Silent	SNP	T	T	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	166898839	T	C	166898839	2	2	19	1	0	0	0	0	0	0	0	1	13927	1799	63	3		3	SCN1A	2	166898839	Silent	SNP	T	TCGA-A3-3373-01A-02D-1421-08	17670987	166898839	76300534	8	1021											
MAP2	4133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	210561004	210561004	+	Silent	SNP	C	C	T	rs147926728		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	210561004	C	T	210561004	2	4	19	1	0	0	0	0	0	0	0	1	9242	535	19	1		1	MAP2	2	210561004	Silent	SNP	C	TCGA-A3-3373-01A-02D-1421-08	43662165	210561004	32638369	9	1022											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183794	10183794	+	Nonsense_Mutation	SNP	G	G	A	rs119103277	alternate_allele	TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	10183794	G	A	10183794	4	1	19	1	0	0	0	0	0	1	0	0	17174	1357	47	2	265	2	VHL	3	10183794	Nonsense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08		10183794	187838636	10	1023											
CYP8B1	1582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	42917124	42917124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	42917124	G	C	42917124	3	2	19	1	0	0	0	0	1	0	0	0	4200	1261	44	4	1324	4	CYP8B1	3	42917124	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08	32733330	42917124	155105306	11	1024											
SLC25A20	788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48900024	48900024	+	Silent	SNP	C	C	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	48900024	C	T	48900024	2	4	19	1	0	0	0	0	0	0	0	1	14496	564	20	2		2	SLC25A20	3	48900024	Silent	SNP	C	TCGA-A3-3373-01A-02D-1421-08	5982900	48900024	149122406	12	1025											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52682446	52682446	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	52682446	T	A	52682446	4	1	19	1	0	0	0	0	0	1	0	0	11498	1821	63	5	4269	5	PBRM1	3	52682446	Nonsense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08	3782422	52682446	145339984	13	1026											
C3orf63	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	56667576	56667576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	56667576	C	A	56667576	3	1	19	1	0	0	0	0	1	0	0	0	2241	709	25	4	1857	4	C3orf63	3	56667576	Missense_Mutation	SNP	C	TCGA-A3-3373-01A-02D-1421-08	3985130	56667576	141354854	14	1027											
SLC15A2	6565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121647359	121647359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	121647359	A	C	121647359	3	2	19	1	0	0	0	0	1	0	0	0	14412	101	4	5	1356	5	SLC15A2	3	121647359	Missense_Mutation	SNP	A	TCGA-A3-3373-01A-02D-1421-08	64979783	121647359	76375071	15	1028											
TFDP2	7029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	141697381	141697381	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	141697381	T	G	141697381	3	3	19	1	0	0	0	0	1	0	0	0	15810	1725	60	5	871	5	TFDP2	3	141697381	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08	20050022	141697381	56325049	16	1029											
ATP13A3	79572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	194149610	194149610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	194149610	T	A	194149610	3	1	19	1	0	0	0	0	1	0	0	0	1125	1464	51	5	793	5	ATP13A3	3	194149610	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08	52452229	194149610	3872820	17	1030											
SH3TC1	54436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	8224578	8224578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	8224578	C	T	8224578	3	4	19	1	0	0	0	0	1	0	0	0	14274	768	27	1	1158	1	SH3TC1	4	8224578	Missense_Mutation	SNP	C	TCGA-A3-3373-01A-02D-1421-08		8224578	182929698	18	1031											
UGT2B11	10720	broad.mit.edu;hgsc.bcm.edu	37	4	70066177	70066177	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	70066177	T	G	70066177	3	3	19	1	0	0	0	0	1	0	0	0	16969	1609	56	5	22	5	UGT2B11	4	70066177	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08	61841599	70066177	121088099	19	1032											
FNIP2	57600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	159750366	159750366	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	159750366	C	G	159750366	3	3	19	1	0	0	0	0	1	0	0	0	5983	855	30	4	380	4	FNIP2	4	159750366	Missense_Mutation	SNP	C	TCGA-A3-3373-01A-02D-1421-08	89684189	159750366	31403910	20	1033											
TARS	6897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33467768	33467768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	33467768	G	T	33467768	3	4	19	1	0	0	0	0	1	0	0	0	15571	962	34	4	2201	4	TARS	5	33467768	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08		33467768	147447492	21	1034											
SLC38A9	153129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	54965131	54965131	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	54965131	T	G	54965131	3	3	19	1	0	0	0	0	1	0	0	0	14624	1493	52	5	1274	5	SLC38A9	5	54965131	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08	21497363	54965131	125950129	22	1035											
ELOVL2	54898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	11005769	11005769	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	11005769	T	G	11005769	3	3	19	1	0	0	0	0	1	0	0	0	5076	1464	51	5	823	5	ELOVL2	6	11005769	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08		11005769	160109298	23	1036											
CTGF	1490	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	132270523	132270523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	132270523	C	T	132270523	3	4	19	1	0	0	0	0	1	0	0	0	4010	893	31	1	122	1	CTGF	6	132270523	Missense_Mutation	SNP	C	TCGA-A3-3373-01A-02D-1421-08	121264754	132270523	38844544	24	1037											
UTRN	7402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	144806603	144806603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	144806603	A	G	144806603	3	3	19	1	0	0	0	0	1	0	0	0	17115	72	3	3	3876	3	UTRN	6	144806603	Missense_Mutation	SNP	A	TCGA-A3-3373-01A-02D-1421-08	12536080	144806603	26308464	25	1038											
POM121C	100101267	broad.mit.edu;hgsc.bcm.edu	37	7	75066894	75066894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	75066894	A	G	75066894	3	3	19	1	0	0	0	0	1	0	0	0	12247	304	11	3	2620	3	POM121C	7	75066894	Missense_Mutation	SNP	A	TCGA-A3-3373-01A-02D-1421-08		75066894	84071769	26	1039											
MFHAS1	9258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	8749927	8749927	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	8749927	G	C	8749927	3	2	19	1	0	0	0	0	1	0	0	0	9528	1252	44	4	2528	4	MFHAS1	8	8749927	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08		8749927	137614095	27	1040											
TRIM32	22954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	119460981	119460981	+	Silent	SNP	T	T	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	119460981	T	C	119460981	2	2	19	1	0	0	0	0	0	0	0	1	16518	1741	61	3		3	TRIM32	9	119460981	Silent	SNP	T	TCGA-A3-3373-01A-02D-1421-08		119460981	21752450	28	1041											
TLR4	7099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	120476405	120476405	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	120476405	T	A	120476405	3	1	19	1	0	0	0	0	1	0	0	0	15965	1638	57	5	2009	5	TLR4	9	120476405	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08	1015424	120476405	20737026	29	1042											
VAV2	7410	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136642527	136642527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	136642527	C	T	136642527	3	4	19	1	0	0	0	0	1	0	0	0	17144	710	25	2	719	2	VAV2	9	136642527	Missense_Mutation	SNP	C	TCGA-A3-3373-01A-02D-1421-08	16166122	136642527	4570904	30	1043											
TNKS2	80351	hgsc.bcm.edu;ucsc.edu	37	10	93622703	93622703	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	-	93622703	G	-	93622703	7	5	19	1	0	1	0	1	0	0	0	0	16333	1291	45	0	3554	0	TNKS2	10	93622703	Frame_Shift_Del	DEL	G	TCGA-A3-3373-01A-02D-1421-08		93622703	41912044	31	1044											
AFAP1L2	84632	hgsc.bcm.edu;ucsc.edu	37	10	116075322	116075322	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	-	116075322	A	-	116075322	7	5	19	1	0	1	0	1	0	0	0	0	355	233	9	0	1903	0	AFAP1L2	10	116075322	Frame_Shift_Del	DEL	A	TCGA-A3-3373-01A-02D-1421-08	22452619	116075322	19459425	32	1045											
EIF3A	8661	broad.mit.edu;hgsc.bcm.edu	37	10	120801706	120801706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	120801706	G	A	120801706	3	1	19	1	0	0	0	0	1	0	0	0	5014	1232	43	2	838	2	EIF3A	10	120801706	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08	4726384	120801706	14733041	33	1046	14	2									
EIF3A	8661	broad.mit.edu;hgsc.bcm.edu	37	10	120801712	120801712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	120801712	C	T	120801712	3	4	19	1	0	0	0	0	1	0	0	0	5014	652	23	1	844	1	EIF3A	10	120801712	Missense_Mutation	SNP	C	TCGA-A3-3373-01A-02D-1421-08	6	120801712	14733035	34	1047	14	2									
SYT7	9066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61323583	61323583	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	61323583	C	G	61323583	3	3	19	1	0	0	0	0	1	0	0	0	15491	768	27	4	1115	4	SYT7	11	61323583	Missense_Mutation	SNP	C	TCGA-A3-3373-01A-02D-1421-08		61323583	73682933	35	1048											
PICALM	8301	hgsc.bcm.edu;ucsc.edu	37	11	85742542	85742550	+	In_Frame_Del	DEL	GTAATGAGA	GTAATGAGA	-	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	GTAATGAGA	GTAATGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	-	85742550	GTAATGAGA	-	85742542	7	5	19	1	0	1	0	1	0	0	0	0	11887	1377	48	0	1820	0	PICALM	11	85742542	In_Frame_Del	DEL	GTAATGAGA	TCGA-A3-3373-01A-02D-1421-08	24418959	85742542	49263974	36	1049											
ATF7IP	55729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14578241	14578241	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	14578241	T	G	14578241	3	3	19	1	0	0	0	0	1	0	0	0	1087	1432	50	5	1394	5	ATF7IP	12	14578241	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08		14578241	119273654	37	1050											
SRGAP1	57522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	64536075	64536075	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	64536075	G	C	64536075	3	2	19	1	0	0	0	0	1	0	0	0	15157	1188	41	4	2967	4	SRGAP1	12	64536075	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08	49957834	64536075	69315820	38	1051											
EEA1	8411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	93210026	93210026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	93210026	T	G	93210026	3	3	19	1	0	0	0	0	1	0	0	0	4923	1841	64	5	2416	5	EEA1	12	93210026	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08	28673951	93210026	40641869	39	1052											
SLC46A3	283537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	29287320	29287320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	29287320	G	A	29287320	3	1	19	1	0	0	0	0	1	0	0	0	14659	1294	45	2	858	2	SLC46A3	13	29287320	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08		29287320	85882558	40	1053											
C14orf126	0	broad.mit.edu;hgsc.bcm.edu	37	14	31917639	31917639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	31917639	T	A	31917639	3	1	19	1	0	0	0	0	1	0	0	0	1745	1841	64	5	307	5	C14orf126	14	31917639	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08		31917639	75431901	41	1054											
DAAM1	23002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	59835514	59835514	+	Silent	SNP	A	A	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	59835514	A	G	59835514	2	3	19	1	0	0	0	0	0	0	0	1	4217	40	2	3		3	DAAM1	14	59835514	Silent	SNP	A	TCGA-A3-3373-01A-02D-1421-08	27917875	59835514	47514026	42	1055											
DYNC1H1	1778	broad.mit.edu	37	14	102431128	102431132	+	Frame_Shift_Del	DEL	CTGCG	-	-	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	CTGCG	CTGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	-	102431132	-	-	102431128	7	5	19	1	0	1	0	1	0	0	0	0	4843	680	24	0	102	0	DYNC1H1	14	102431128	Frame_Shift_Del	DEL	CTGCG	TCGA-A3-3373-01A-02D-1421-08	42595614	102431128	4918412	43	1056											
KIF26A	26153	broad.mit.edu	37	14	104643367	104643367	+	Silent	SNP	G	A	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	104643367	A	A	104643367	2	1	19	1	0	0	0	0	0	0	0	1	8301	1223	43	2		2	KIF26A	14	104643367	Silent	SNP	G	TCGA-A3-3373-01A-02D-1421-08	2212239	104643367	2706173	44	1057											
AQP9	366	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	58471498	58471498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	58471498	C	T	58471498	3	4	19	1	0	0	0	0	1	0	0	0	833	855	30	2	685	2	AQP9	15	58471498	Missense_Mutation	SNP	C	TCGA-A3-3373-01A-02D-1421-08		58471498	44059894	45	1058											
MAPK8IP3	23162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1793404	1793404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	1793404	G	A	1793404	3	1	19	1	0	0	0	0	1	0	0	0	9293	1203	42	2	689	2	MAPK8IP3	16	1793404	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08		1793404	88561349	46	1059											
TUFM	7284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28857318	28857318	+	Silent	SNP	G	G	A	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	A	28857318	G	A	28857318	2	1	19	1	0	0	0	0	0	0	0	1	16783	1140	40	1		1	TUFM	16	28857318	Silent	SNP	G	TCGA-A3-3373-01A-02D-1421-08	27063914	28857318	61497435	47	1060											
EIF5A	1984	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7214802	7214802	+	Splice_Site	SNP	T	T	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	7214802	T	C	7214802	5	2	19	1	0	0	0	0	0	0	1	0	5043	1652	57	3	508	3	EIF5A	17	7214802	Splice_Site	SNP	T	TCGA-A3-3373-01A-02D-1421-08		7214802	73980408	48	1061											
CHAF1A	10036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4408962	4408962	+	Missense_Mutation	SNP	G	G	T	rs61729782	alternate_allele	TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	4408962	G	T	4408962	3	4	19	1	0	0	0	0	1	0	0	0	3313	1058	37	4	176	4	CHAF1A	19	4408962	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08		4408962	54720021	49	1062											
PLIN4	729359	hgsc.bcm.edu	37	19	4511539	4511539	+	Missense_Mutation	SNP	C	C	G	rs111868968	bycluster;byfrequency;alternate_allele	TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	4511539	C	G	4511539	3	3	19	1	0	0	0	0	1	0	0	0	12099	680	24	4	1698	4	PLIN4	19	4511539	Missense_Mutation	SNP	C	TCGA-A3-3373-01A-02D-1421-08	102577	4511539	54617444	50	1063											
JOSD2	126119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51010902	51010902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	51010902	G	T	51010902	3	4	19	1	0	0	0	0	1	0	0	0	7966	1020	36	4	377	4	JOSD2	19	51010902	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08	46499363	51010902	8118081	51	1064											
PRPF31	26121	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54625914	54625914	+	Silent	SNP	A	A	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	54625914	A	C	54625914	2	2	19	1	0	0	0	0	0	0	0	1	12576	296	11	5		5	PRPF31	19	54625914	Silent	SNP	A	TCGA-A3-3373-01A-02D-1421-08	3615012	54625914	4503069	52	1065											
SIRPD	128646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	1532510	1532510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	1532510	A	G	1532510	3	3	19	1	0	0	0	0	1	0	0	0	14348	14	1	3	357	3	SIRPD	20	1532510	Missense_Mutation	SNP	A	TCGA-A3-3373-01A-02D-1421-08		1532510	61493010	53	1066											
RBM12	10137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34242653	34242653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	G	34242653	A	G	34242653	3	3	19	1	0	0	0	0	1	0	0	0	13126	333	12	3	2210	3	RBM12	20	34242653	Missense_Mutation	SNP	A	TCGA-A3-3373-01A-02D-1421-08	32710143	34242653	28782867	54	1067											
R3HDML	140902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	42965937	42965937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	42965937	T	C	42965937	3	2	19	1	0	0	0	0	1	0	0	0	12902	1580	55	3	142	3	R3HDML	20	42965937	Missense_Mutation	SNP	T	TCGA-A3-3373-01A-02D-1421-08	8723284	42965937	20059583	55	1068											
NCOA3	8202	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	46256718	46256718	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	T	46256718	A	T	46256718	3	4	19	1	0	0	0	0	1	0	0	0	10237	243	9	5	796	5	NCOA3	20	46256718	Missense_Mutation	SNP	A	TCGA-A3-3373-01A-02D-1421-08	3290781	46256718	16768802	56	1069											
DMD	1756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	32862975	32862975	+	Silent	SNP	T	T	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	32862975	T	C	32862975	2	2	19	1	0	0	0	0	0	0	0	1	4582	1799	63	3		3	DMD	23	32862975	Silent	SNP	T	TCGA-A3-3373-01A-02D-1421-08		32862975	122407585	57	1070											
DIAPH2	1730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	96369939	96369939	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3373-01A-02D-1421-08	TCGA-A3-3373-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cbaac72-ca6e-4c4b-a016-1836959344c8	0cc2be61-ac32-46b9-864f-1092faa4f1c8	C	96369939	G	C	96369939	3	2	19	1	0	0	0	0	1	0	0	0	4521	1174	41	4	2646	4	DIAPH2	23	96369939	Missense_Mutation	SNP	G	TCGA-A3-3373-01A-02D-1421-08	63506964	96369939	58900621	58	1071											
IGSF3	3321	broad.mit.edu	37	1	117142736	117142736	+	Missense_Mutation	SNP	A	A	G	rs138851517		TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	G	117142736	A	G	117142736	3	3	20	1	0	0	0	0	1	0	0	0	7608	333	12	3	1748	3	IGSF3	1	117142736	Missense_Mutation	SNP	A	TCGA-A3-3374-01A-01D-0966-08		117142736	132107885	1	1072											
NAV1	89796	broad.mit.edu	37	1	201772738	201772738	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	A	201772738	C	A	201772738	3	1	20	1	0	0	0	0	1	0	0	0	10190	479	17	4	3654	4	NAV1	1	201772738	Missense_Mutation	SNP	C	TCGA-A3-3374-01A-01D-0966-08	84630002	201772738	47477883	2	1073											
CAPN2	824	broad.mit.edu	37	1	223954130	223954130	+	Silent	SNP	A	A	C			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	C	223954130	A	C	223954130	2	2	20	1	0	0	0	0	0	0	0	1	2629	407	15	5		5	CAPN2	1	223954130	Silent	SNP	A	TCGA-A3-3374-01A-01D-0966-08	22181392	223954130	25296491	3	1074											
GREB1	9687	broad.mit.edu	37	2	11774455	11774455	+	Silent	SNP	C	C	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	T	11774455	C	T	11774455	2	4	20	1	0	0	0	0	0	0	0	1	6767	535	19	1		1	GREB1	2	11774455	Silent	SNP	C	TCGA-A3-3374-01A-01D-0966-08		11774455	231424918	4	1075											
SUSD5	26032	broad.mit.edu	37	3	33195040	33195040	+	Missense_Mutation	SNP	C	C	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	A	33195040	C	A	33195040	3	1	20	1	0	0	0	0	1	0	0	0	15423	565	20	4	809	4	SUSD5	3	33195040	Missense_Mutation	SNP	C	TCGA-A3-3374-01A-01D-0966-08		33195040	164827390	5	1076											
KIAA1143	57456	broad.mit.edu	37	3	44794950	44794950	+	Silent	SNP	T	T	C			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	C	44794950	T	C	44794950	2	2	20	1	0	0	0	0	0	0	0	1	8216	1799	63	3		3	KIAA1143	3	44794950	Silent	SNP	T	TCGA-A3-3374-01A-01D-0966-08	11599910	44794950	153227480	6	1077											
MST1	4485	broad.mit.edu	37	3	49725275	49725279	+	Frame_Shift_Del	DEL	GTGCT	GTGCT	-			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	5ce74ef1-1c9a-4ede-a0d3-1c1f6b2c6856	-	49725279	GTGCT	-	49725275	7	5	20	1	0	1	0	1	0	0	0	0	9897	1252	44	0	2095	0	MST1	3	49725275	Frame_Shift_Del	DEL	GTGCT	TCGA-A3-3374-01A-01D-0966-08	4930325	49725275	148297155	7	1078											
TEX264	51368	broad.mit.edu	37	3	51708285	51708285	+	Splice_Site	SNP	A	A	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	T	51708285	A	T	51708285	5	4	20	1	0	0	0	0	0	0	1	0	15795	202	7	5		5	TEX264	3	51708285	Splice_Site	SNP	A	TCGA-A3-3374-01A-01D-0966-08	1983010	51708285	146314145	8	1079											
POLQ	10721	broad.mit.edu	37	3	121238716	121238723	+	Splice_Site	DEL	ACCTACTG	ACCTACTG	-			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	-	121238723	ACCTACTG	-	121238716	8	5	20	1	0	1	0	1	0	0	1	0	12215	405	14	0	6390	0	POLQ	3	121238716	Splice_Site	DEL	ACCTACTG	TCGA-A3-3374-01A-01D-0966-08	69530431	121238716	76783714	9	1080											
TMEM108	66000	broad.mit.edu	37	3	133098622	133098622	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	A	133098622	G	A	133098622	3	1	20	1	0	0	0	0	1	0	0	0	16036	1059	37	1	73	1	TMEM108	3	133098622	Missense_Mutation	SNP	G	TCGA-A3-3374-01A-01D-0966-08	11859906	133098622	64923808	10	1081											
EHHADH	1962	broad.mit.edu	37	3	184953206	184953206	+	Missense_Mutation	SNP	T	T	C			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	C	184953206	T	C	184953206	3	2	20	1	0	0	0	0	1	0	0	0	4984	1638	57	3	1968	3	EHHADH	3	184953206	Missense_Mutation	SNP	T	TCGA-A3-3374-01A-01D-0966-08	51854584	184953206	13069224	11	1082											
MAP3K13	9175	broad.mit.edu	37	3	185198109	185198109	+	Missense_Mutation	SNP	G	G	C			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	C	185198109	G	C	185198109	3	2	20	1	0	0	0	0	1	0	0	0	9254	1029	36	4	2637	4	MAP3K13	3	185198109	Missense_Mutation	SNP	G	TCGA-A3-3374-01A-01D-0966-08	244903	185198109	12824321	12	1083											
HERC6	55008	broad.mit.edu	37	4	89334236	89334236	+	Missense_Mutation	SNP	C	C	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	T	89334236	C	T	89334236	3	4	20	1	0	0	0	0	1	0	0	0	7069	536	19	1	1219	1	HERC6	4	89334236	Missense_Mutation	SNP	C	TCGA-A3-3374-01A-01D-0966-08		89334236	101820040	13	1084											
GRIA1	2890	broad.mit.edu	37	5	153190646	153190646	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	A	153190646	G	A	153190646	3	1	20	1	0	0	0	0	1	0	0	0	6774	1087	38	1	2763	1	GRIA1	5	153190646	Missense_Mutation	SNP	G	TCGA-A3-3374-01A-01D-0966-08		153190646	27724614	14	1085											
FLT4	2324	broad.mit.edu	37	5	180058747	180058748	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	5ce74ef1-1c9a-4ede-a0d3-1c1f6b2c6856	G	180058748	-	G	180058747	7	5	20	1	0	1	1	0	0	0	0	0	5951	871	31	0	4125	0	FLT4	5	180058747	Frame_Shift_Ins	INS	-	TCGA-A3-3374-01A-01D-0966-08	26868101	180058747	856513	15	1086											
SYNE1	23345	broad.mit.edu	37	6	152749365	152749365	+	Missense_Mutation	SNP	C	C	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	T	152749365	C	T	152749365	3	4	20	1	0	0	0	0	1	0	0	0	15457	864	30	2	21955	2	SYNE1	6	152749365	Missense_Mutation	SNP	C	TCGA-A3-3374-01A-01D-0966-08		152749365	18365702	16	1087											
PNPLA8	50640	broad.mit.edu	37	7	108155503	108155504	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	5ce74ef1-1c9a-4ede-a0d3-1c1f6b2c6856	C	108155504	-	C	108155503	7	5	20	1	0	1	1	0	0	0	0	0	12178	40	2	0	1951	0	PNPLA8	7	108155503	Frame_Shift_Ins	INS	-	TCGA-A3-3374-01A-01D-0966-08		108155503	50983160	17	1088											
CPA5	93979	broad.mit.edu	37	7	130008311	130008311	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	A	130008311	G	A	130008311	3	1	20	1	0	0	0	0	1	0	0	0	3795	971	34	2	1226	2	CPA5	7	130008311	Missense_Mutation	SNP	G	TCGA-A3-3374-01A-01D-0966-08	21852808	130008311	29130352	18	1089											
BLK	640	broad.mit.edu	37	8	11412980	11412980	+	Silent	SNP	C	C	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	A	11412980	C	A	11412980	2	1	20	1	0	0	0	0	0	0	0	1	1444	755	27	4		4	BLK	8	11412980	Silent	SNP	C	TCGA-A3-3374-01A-01D-0966-08		11412980	134951042	19	1090											
ANGPT1	284	broad.mit.edu	37	8	108276471	108276471	+	Silent	SNP	T	T	C			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	C	108276471	T	C	108276471	2	2	20	1	0	0	0	0	0	0	0	1	610	1490	52	3		3	ANGPT1	8	108276471	Silent	SNP	T	TCGA-A3-3374-01A-01D-0966-08	96863491	108276471	38087551	20	1091											
TRMT12	55039	broad.mit.edu	37	8	125463612	125463612	+	Missense_Mutation	SNP	C	C	G			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	G	125463612	C	G	125463612	3	3	20	1	0	0	0	0	1	0	0	0	16576	854	30	4	446	4	TRMT12	8	125463612	Missense_Mutation	SNP	C	TCGA-A3-3374-01A-01D-0966-08	17187141	125463612	20900410	21	1092											
EPPK1	83481	broad.mit.edu	37	8	144940615	144940615	+	Silent	SNP	G	G	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	5ce74ef1-1c9a-4ede-a0d3-1c1f6b2c6856	A	144940615	G	A	144940615	2	1	20	1	0	0	0	0	0	0	0	1	5192	1103	39	1		1	EPPK1	8	144940615	Silent	SNP	G	TCGA-A3-3374-01A-01D-0966-08	19477003	144940615	1423407	22	1093											
SETX	23064	broad.mit.edu	37	9	135158714	135158714	+	Silent	SNP	T	T	C			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	C	135158714	T	C	135158714	2	2	20	1	0	0	0	0	0	0	0	1	14154	1635	57	3		3	SETX	9	135158714	Silent	SNP	T	TCGA-A3-3374-01A-01D-0966-08		135158714	6054717	23	1094											
DCLRE1C	64421	broad.mit.edu	37	10	14950897	14950897	+	Missense_Mutation	SNP	G	G	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	A	14950897	G	A	14950897	3	1	20	1	0	0	0	0	1	0	0	0	4298	1029	36	2	493	2	DCLRE1C	10	14950897	Missense_Mutation	SNP	G	TCGA-A3-3374-01A-01D-0966-08		14950897	120583850	24	1095											
SORCS3	22986	broad.mit.edu	37	10	106976771	106976771	+	Silent	SNP	C	C	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	T	106976771	C	T	106976771	2	4	20	1	0	0	0	0	0	0	0	1	14945	874	31	1		1	SORCS3	10	106976771	Silent	SNP	C	TCGA-A3-3374-01A-01D-0966-08	92025874	106976771	28557976	25	1096											
MON2	23041	broad.mit.edu	37	12	62918364	62918364	+	Silent	SNP	C	C	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	5ce74ef1-1c9a-4ede-a0d3-1c1f6b2c6856	A	62918364	C	A	62918364	2	1	20	1	0	0	0	0	0	0	0	1	9707	528	19	4		4	MON2	12	62918364	Silent	SNP	C	TCGA-A3-3374-01A-01D-0966-08		62918364	70933531	26	1097											
SLC25A21	89874	broad.mit.edu	37	14	37194883	37194883	+	Splice_Site	SNP	C	C	G			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	G	37194883	C	G	37194883	5	3	20	1	0	0	0	0	0	0	1	0	14497	927	32	4	594	4	SLC25A21	14	37194883	Splice_Site	SNP	C	TCGA-A3-3374-01A-01D-0966-08		37194883	70154657	27	1098											
OCA2	4948	broad.mit.edu	37	15	28230277	28230277	+	Missense_Mutation	SNP	C	C	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	T	28230277	C	T	28230277	3	4	20	1	0	0	0	0	1	0	0	0	10822	768	27	1	1267	1	OCA2	15	28230277	Missense_Mutation	SNP	C	TCGA-A3-3374-01A-01D-0966-08		28230277	74301115	28	1099											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42127000	42127000	+	Missense_Mutation	SNP	C	C	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	T	42127000	C	T	42127000	3	4	20	1	0	0	0	0	1	0	0	0	7962	643	23	1	133	1	JMJD7-PLA2G4B	15	42127000	Missense_Mutation	SNP	C	TCGA-A3-3374-01A-01D-0966-08	13896723	42127000	60404392	29	1100											
VPS13C	54832	broad.mit.edu	37	15	62254983	62254984	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	A	62254984	-	A	62254983	7	5	20	1	0	1	1	0	0	0	0	0	17203	478	17	0	8101	0	VPS13C	15	62254983	Frame_Shift_Ins	INS	-	TCGA-A3-3374-01A-01D-0966-08	20127983	62254983	40276409	30	1101											
FES	2242	broad.mit.edu	37	15	91436556	91436557	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	5ce74ef1-1c9a-4ede-a0d3-1c1f6b2c6856	C	91436557	-	C	91436556	7	5	20	1	0	1	1	0	0	0	0	0	5827	1203	42	0	2015	0	FES	15	91436556	Frame_Shift_Ins	INS	-	TCGA-A3-3374-01A-01D-0966-08	29181573	91436556	11094836	31	1102											
TUSC5	286753	broad.mit.edu	37	17	1183365	1183365	+	Missense_Mutation	SNP	C	C	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	T	1183365	C	T	1183365	3	4	20	1	0	0	0	0	1	0	0	0	16791	739	26	2	72	2	TUSC5	17	1183365	Missense_Mutation	SNP	C	TCGA-A3-3374-01A-01D-0966-08		1183365	80011845	32	1103											
MYO19	80179	broad.mit.edu	37	17	34861237	34861237	+	Missense_Mutation	SNP	G	G	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	T	34861237	G	T	34861237	3	4	20	1	0	0	0	0	1	0	0	0	10074	1020	36	4	1140	4	MYO19	17	34861237	Missense_Mutation	SNP	G	TCGA-A3-3374-01A-01D-0966-08	33677872	34861237	46333973	33	1104											
DHX40	79665	broad.mit.edu	37	17	57663568	57663568	+	Silent	SNP	A	A	G	rs2697395	by1000genomes	TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	G	57663568	A	G	57663568	2	3	20	1	0	0	0	0	0	0	0	1	4514	40	2	3		3	DHX40	17	57663568	Silent	SNP	A	TCGA-A3-3374-01A-01D-0966-08	22802331	57663568	23531642	34	1105											
LILRA1	11024	broad.mit.edu	37	19	55106130	55106130	+	Splice_Site	SNP	G	G	A			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	A	55106130	G	A	55106130	5	1	20	1	0	0	0	0	0	0	1	0	8791	1246	43	2	81	2	LILRA1	19	55106130	Splice_Site	SNP	G	TCGA-A3-3374-01A-01D-0966-08		55106130	4022853	35	1106											
COL18A1	80781	broad.mit.edu	37	21	46924414	46924422	+	In_Frame_Del	DEL	CCCGGCCCC	CCCGGCCCC	-	rs72301048		TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	-	46924422	CCCGGCCCC	-	46924414	7	5	20	1	0	1	0	1	0	0	0	0	3677	739	26	0	4301	0	COL18A1	21	46924414	In_Frame_Del	DEL	CCCGGCCCC	TCGA-A3-3374-01A-01D-0966-08		46924414	1205481	36	1107											
EIF3L	51386	broad.mit.edu	37	22	38247400	38247400	+	Silent	SNP	T	T	C			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	7f666874-05ea-4988-937b-d122344f4ea6	C	38247400	T	C	38247400	2	2	20	1	0	0	0	0	0	0	0	1	5024	1838	64	3		3	EIF3L	22	38247400	Silent	SNP	T	TCGA-A3-3374-01A-01D-0966-08		38247400	13057166	37	1108											
PPP1R3F	89801	broad.mit.edu	37	X	49142980	49142980	+	Missense_Mutation	SNP	G	G	T			TCGA-A3-3374-01A-01D-0966-08	TCGA-A3-3374-11A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7dd73a6-693a-41e7-bbe7-fcf3d752ddb3	5ce74ef1-1c9a-4ede-a0d3-1c1f6b2c6856	T	49142980	G	T	49142980	3	4	20	1	0	0	0	0	1	0	0	0	12385	1261	44	4	1842	4	PPP1R3F	23	49142980	Missense_Mutation	SNP	G	TCGA-A3-3374-01A-01D-0966-08		49142980	106127580	38	1109											
SPEN	23013	broad.mit.edu	37	1	16257104	16257104	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	16257104	G	G	16257104	3	3	21	1	0	0	0	0	1	0	0	0	15050	1435	50	5	4411	5	SPEN	1	16257104	Missense_Mutation	SNP	T	TCGA-A3-3376-01A-02D-1421-08		16257104	232993517	1	1110											
SDHB	6390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	17350478	17350478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	17350478	A	G	17350478	3	3	21	1	0	0	0	0	1	0	0	0	13978	43	2	3	222	3	SDHB	1	17350478	Missense_Mutation	SNP	A	TCGA-A3-3376-01A-02D-1421-08	1093374	17350478	231900143	2	1111											
EPHA10	284656	broad.mit.edu	37	1	38227126	38227126	+	Silent	SNP	G	T	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	38227126	T	T	38227126	2	4	21	1	0	0	0	0	0	0	0	1	5168	1190	42	4		4	EPHA10	1	38227126	Silent	SNP	G	TCGA-A3-3376-01A-02D-1421-08	20876648	38227126	211023495	3	1112											
NEGR1	257194	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	72400804	72400804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	72400804	G	T	72400804	3	4	21	1	0	0	0	0	1	0	0	0	10324	1299	45	4	721	4	NEGR1	1	72400804	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08	34173678	72400804	176849817	4	1113											
HIAT1	64645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100546150	100546150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	100546150	A	C	100546150	3	2	21	1	0	0	0	0	1	0	0	0	7104	363	13	5	1243	5	HIAT1	1	100546150	Missense_Mutation	SNP	A	TCGA-A3-3376-01A-02D-1421-08	28145346	100546150	148704471	5	1114											
C1orf162	128346	broad.mit.edu;ucsc.edu	37	1	112019442	112019442	+	Silent	SNP	A	C	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	112019442	C	C	112019442	2	2	21	1	0	0	0	0	0	0	0	1	2012	175	7	5		5	C1orf162	1	112019442	Silent	SNP	A	TCGA-A3-3376-01A-02D-1421-08	11473292	112019442	137231179	6	1115											
TATDN3	128387	hgsc.bcm.edu;ucsc.edu	37	1	212981154	212981154	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	-	212981154	C	-	212981154	7	5	21	1	0	1	0	1	0	0	0	0	15605	912	32	0	594	0	TATDN3	1	212981154	Frame_Shift_Del	DEL	C	TCGA-A3-3376-01A-02D-1421-08	100961712	212981154	36269467	7	1116											
RAPGEF4	11069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	173879257	173879257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	173879257	G	A	173879257	3	1	21	1	0	0	0	0	1	0	0	0	13059	1000	35	2	1810	2	RAPGEF4	2	173879257	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08		173879257	69320116	8	1117											
VHL	7428	broad.mit.edu	37	3	10183872	10183872	+	Splice_Site	SNP	G	C	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina GAIIx	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	10183872	C	C	10183872	5	2	21	1	0	0	0	0	0	0	1	0	17174	1275	44	4	343	4	VHL	3	10183872	Splice_Site	SNP	G	TCGA-A3-3376-01A-02D-1421-08		10183872	187838558	9	1118											
LEPREL1	55214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	189689771	189689771	+	Silent	SNP	G	G	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	189689771	G	T	189689771	2	4	21	1	0	0	0	0	0	0	0	1	8737	1277	45	4		4	LEPREL1	3	189689771	Silent	SNP	G	TCGA-A3-3376-01A-02D-1421-08	179505899	189689771	8332659	10	1119											
PIK3R1	5295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	67590479	67590479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	67590479	G	T	67590479	3	4	21	1	0	0	0	0	1	0	0	0	11925	1145	40	4	1713	4	PIK3R1	5	67590479	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08		67590479	113324781	11	1120											
AP3B1	8546	hgsc.bcm.edu	37	5	77396836	77396838	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	-	77396838	TTC	-	77396836	7	5	21	1	0	1	0	1	0	0	0	0	744	1841	64	0	901	0	AP3B1	5	77396836	In_Frame_Del	DEL	TTC	TCGA-A3-3376-01A-02D-1421-08	9806357	77396836	103518424	12	1121											
DOPEY1	23033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	83823121	83823121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	83823121	T	C	83823121	3	2	21	1	0	0	0	0	1	0	0	0	4709	1841	64	3	779	3	DOPEY1	6	83823121	Missense_Mutation	SNP	T	TCGA-A3-3376-01A-02D-1421-08		83823121	87291946	13	1122											
EPHA7	2045	broad.mit.edu;hgsc.bcm.edu	37	6	93969181	93969181	+	Silent	SNP	G	G	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	93969181	G	C	93969181	2	2	21	1	0	0	0	0	0	0	0	1	5174	1335	47	4		4	EPHA7	6	93969181	Silent	SNP	G	TCGA-A3-3376-01A-02D-1421-08	10146060	93969181	77145886	14	1123											
QRSL1	55278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	107088233	107088233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	107088233	G	A	107088233	3	1	21	1	0	0	0	0	1	0	0	0	12894	1203	42	2	40	2	QRSL1	6	107088233	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08	13119052	107088233	64026834	15	1124											
TNRC18	84629	broad.mit.edu	37	7	5347894	5347894	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	5347894	G	G	5347894	3	3	21	1	0	0	0	0	1	0	0	0	16351	159	6	3	160	3	TNRC18	7	5347894	Missense_Mutation	SNP	A	TCGA-A3-3376-01A-02D-1421-08		5347894	153790769	16	1125											
ANKIB1	54467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92027912	92027912	+	Silent	SNP	C	C	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	92027912	C	A	92027912	2	1	21	1	0	0	0	0	0	0	0	1	630	816	29	4		4	ANKIB1	7	92027912	Silent	SNP	C	TCGA-A3-3376-01A-02D-1421-08	86680018	92027912	67110751	17	1126											
LMTK2	22853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	97822827	97822827	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	97822827	C	G	97822827	3	3	21	1	0	0	0	0	1	0	0	0	8866	565	20	4	3092	4	LMTK2	7	97822827	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08	5794915	97822827	61315836	18	1127											
MLL5	55904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	104749515	104749515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	104749515	T	C	104749515	3	2	21	1	0	0	0	0	1	0	0	0	9631	1580	55	3	3677	3	MLL5	7	104749515	Missense_Mutation	SNP	T	TCGA-A3-3376-01A-02D-1421-08	6926688	104749515	54389148	19	1128											
MLL3	58508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151873357	151873357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	151873357	G	T	151873357	3	4	21	1	0	0	0	0	1	0	0	0	9629	1299	45	4	5642	4	MLL3	7	151873357	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08	47123842	151873357	7265306	20	1129											
LSM1	27257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38029515	38029515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	38029515	A	G	38029515	3	3	21	1	0	0	0	0	1	0	0	0	9057	72	3	3	330	3	LSM1	8	38029515	Missense_Mutation	SNP	A	TCGA-A3-3376-01A-02D-1421-08		38029515	108334507	21	1130											
E2F5	1875	broad.mit.edu	37	8	86119690	86119690	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	86119690	A	A	86119690	3	1	21	1	0	0	0	0	1	0	0	0	4872	913	32	4	599	4	E2F5	8	86119690	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08	48090175	86119690	60244332	22	1131											
KLF10	7071	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	103663602	103663602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	103663602	C	T	103663602	3	4	21	1	0	0	0	0	1	0	0	0	8345	478	17	2	492	2	KLF10	8	103663602	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08	17543912	103663602	42700420	23	1132											
DOCK8	81704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	406989	406989	+	Silent	SNP	T	T	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	406989	T	A	406989	2	1	21	1	0	0	0	0	0	0	0	1	4695	1596	56	5		5	DOCK8	9	406989	Silent	SNP	T	TCGA-A3-3376-01A-02D-1421-08		406989	140806442	24	1133											
ZNF510	22869	broad.mit.edu;ucsc.edu	37	9	99538291	99538291	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	99538291	A	A	99538291	3	1	21	1	0	0	0	0	1	0	0	0	17966	710	25	4	2010	4	ZNF510	9	99538291	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08	99131302	99538291	41675140	25	1134											
SLC25A25	114789	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130868093	130868093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	130868093	G	A	130868093	3	1	21	1	0	0	0	0	1	0	0	0	14501	1116	39	1	1241	1	SLC25A25	9	130868093	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08	31329802	130868093	10345338	26	1135											
CCDC3	83643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	12940511	12940511	+	Missense_Mutation	SNP	G	G	T	rs150259960	alternate_allele	TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	12940511	G	T	12940511	3	4	21	1	0	0	0	0	1	0	0	0	2806	962	34	4	98	4	CCDC3	10	12940511	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08		12940511	122594236	27	1136											
SFXN2	118980	broad.mit.edu;hgsc.bcm.edu	37	10	104489089	104489089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	104489089	T	C	104489089	3	2	21	1	0	0	0	0	1	0	0	0	14208	1783	62	3	459	3	SFXN2	10	104489089	Missense_Mutation	SNP	T	TCGA-A3-3376-01A-02D-1421-08	91548578	104489089	31045658	28	1137											
SORCS1	114815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	108366996	108366996	+	Silent	SNP	A	A	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	108366996	A	G	108366996	2	3	21	1	0	0	0	0	0	0	0	1	14943	175	7	3		3	SORCS1	10	108366996	Silent	SNP	A	TCGA-A3-3376-01A-02D-1421-08	3877907	108366996	27167751	29	1138											
HBE1	3046	broad.mit.edu	37	11	5291073	5291073	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	5291073	A	A	5291073	3	1	21	1	0	0	0	0	1	0	0	0	6987	856	30	4	407	4	HBE1	11	5291073	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08		5291073	129715443	30	1139											
SLC6A5	9152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	20629130	20629130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	20629130	T	C	20629130	3	2	21	1	0	0	0	0	1	0	0	0	14700	1522	53	3	935	3	SLC6A5	11	20629130	Missense_Mutation	SNP	T	TCGA-A3-3376-01A-02D-1421-08	15338057	20629130	114377386	31	1140											
PTPRJ	5795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	48166241	48166241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	48166241	G	A	48166241	3	1	21	1	0	0	0	0	1	0	0	0	12817	1319	46	2	2649	2	PTPRJ	11	48166241	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08	27537111	48166241	86840275	32	1141											
PPP2R5B	5526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64695788	64695788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	64695788	G	A	64695788	3	1	21	1	0	0	0	0	1	0	0	0	12403	1291	45	2	631	2	PPP2R5B	11	64695788	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08	16529547	64695788	70310728	33	1142											
DIXDC1	85458	hgsc.bcm.edu	37	11	111865799	111865800	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	111865800	-	G	111865799	7	5	21	1	0	1	1	0	0	0	0	0	4543	175	7	0	1578	0	DIXDC1	11	111865799	Frame_Shift_Ins	INS	-	TCGA-A3-3376-01A-02D-1421-08	47170011	111865799	23140717	34	1143											
SOAT2	8435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53512684	53512684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	53512684	G	T	53512684	3	4	21	1	0	0	0	0	1	0	0	0	14924	1377	48	4	908	4	SOAT2	12	53512684	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08		53512684	80339211	35	1144	15	2									
SOAT2	8435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53512685	53512685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	53512685	T	G	53512685	3	3	21	1	0	0	0	0	1	0	0	0	14924	1667	58	5	909	5	SOAT2	12	53512685	Missense_Mutation	SNP	T	TCGA-A3-3376-01A-02D-1421-08	1	53512685	80339210	36	1145	15	2									
CDC16	8881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	115004884	115004884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	115004884	T	G	115004884	3	3	21	1	0	0	0	0	1	0	0	0	3060	1403	49	5	318	5	CDC16	13	115004884	Missense_Mutation	SNP	T	TCGA-A3-3376-01A-02D-1421-08		115004884	164994	37	1146											
C14orf39	317761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	60928115	60928115	+	Silent	SNP	C	C	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	60928115	C	T	60928115	2	4	21	1	0	0	0	0	0	0	0	1	1774	912	32	2		2	C14orf39	14	60928115	Silent	SNP	C	TCGA-A3-3376-01A-02D-1421-08		60928115	46421425	38	1147	16	2									
C14orf39	317761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	60928116	60928116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	60928116	T	C	60928116	3	2	21	1	0	0	0	0	1	0	0	0	1774	1580	55	3	714	3	C14orf39	14	60928116	Missense_Mutation	SNP	T	TCGA-A3-3376-01A-02D-1421-08	1	60928116	46421424	39	1148	16	2									
UBR1	197131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43317589	43317589	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	C	43317589	G	C	43317589	3	2	21	1	0	0	0	0	1	0	0	0	16913	1368	48	4	2771	4	UBR1	15	43317589	Missense_Mutation	SNP	G	TCGA-A3-3376-01A-02D-1421-08		43317589	59213803	40	1149											
DENND4A	10260	broad.mit.edu;hgsc.bcm.edu	37	15	65983198	65983198	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	65983198	C	G	65983198	3	3	21	1	0	0	0	0	1	0	0	0	4435	681	24	4	2033	4	DENND4A	15	65983198	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08	22665609	65983198	36548194	41	1150											
CYLD	1540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	50783997	50783997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	50783997	C	A	50783997	3	1	21	1	0	0	0	0	1	0	0	0	4145	855	30	4	390	4	CYLD	16	50783997	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08		50783997	39570756	42	1151											
FAM96B	51647	broad.mit.edu;hgsc.bcm.edu	37	16	66966160	66966160	+	Silent	SNP	C	C	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	66966160	C	T	66966160	2	4	21	1	0	0	0	0	0	0	0	1	5662	581	21	2		2	FAM96B	16	66966160	Silent	SNP	C	TCGA-A3-3376-01A-02D-1421-08	16182163	66966160	23388593	43	1152											
NUP85	79902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73204674	73204674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	73204674	C	T	73204674	3	4	21	1	0	0	0	0	1	0	0	0	10777	594	21	2	92	2	NUP85	17	73204674	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08		73204674	7990536	44	1153											
KIAA0195	9772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73488654	73488654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	73488654	T	A	73488654	3	1	21	1	0	0	0	0	1	0	0	0	8167	1551	54	5	1750	5	KIAA0195	17	73488654	Missense_Mutation	SNP	T	TCGA-A3-3376-01A-02D-1421-08	283980	73488654	7706556	45	1154											
SPIB	6689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50926246	50926246	+	Silent	SNP	C	C	A	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	A	50926246	C	A	50926246	2	1	21	1	0	0	0	0	0	0	0	1	15062	610	22	4		4	SPIB	19	50926246	Silent	SNP	C	TCGA-A3-3376-01A-02D-1421-08		50926246	8202737	46	1155											
TOX2	84969	broad.mit.edu;hgsc.bcm.edu	37	20	42680130	42680130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	42680130	C	T	42680130	3	4	21	1	0	0	0	0	1	0	0	0	16390	768	27	1	740	1	TOX2	20	42680130	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08		42680130	20345390	47	1156											
SEMG2	6407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	43850086	43850086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	43850086	C	T	43850086	3	4	21	1	0	0	0	0	1	0	0	0	14058	710	25	2	58	2	SEMG2	20	43850086	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08	1169956	43850086	19175434	48	1157											
STMN3	50861	broad.mit.edu;hgsc.bcm.edu	37	20	62275107	62275107	+	Splice_Site	SNP	G	G	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	62275107	G	T	62275107	5	4	21	1	0	0	0	0	0	0	1	0	15322	1333	46	4	261	4	STMN3	20	62275107	Splice_Site	SNP	G	TCGA-A3-3376-01A-02D-1421-08	18425021	62275107	750413	49	1158											
DYRK1A	1859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	38845082	38845082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	38845082	A	G	38845082	3	3	21	1	0	0	0	0	1	0	0	0	4856	217	8	3	113	3	DYRK1A	21	38845082	Missense_Mutation	SNP	A	TCGA-A3-3376-01A-02D-1421-08		38845082	9284813	50	1159											
DYRK1A	1859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	38862648	38862648	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	38862648	C	G	38862648	3	3	21	1	0	0	0	0	1	0	0	0	4856	594	21	4	858	4	DYRK1A	21	38862648	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08	17566	38862648	9267247	51	1160											
CCT8L2	150160	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	17073177	17073177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	G	17073177	C	G	17073177	3	3	21	1	0	0	0	0	1	0	0	0	2963	740	26	4	1413	4	CCT8L2	22	17073177	Missense_Mutation	SNP	C	TCGA-A3-3376-01A-02D-1421-08		17073177	34231389	52	1161											
TEX13A	56157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	104464656	104464656	+	Silent	SNP	C	C	T	novel		TCGA-A3-3376-01A-02D-1421-08	TCGA-A3-3376-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31031387-393f-4bf9-ba87-cfe7330afc13	030e8c64-a55c-4996-9372-ad45846be7c0	T	104464656	C	T	104464656	2	4	21	1	0	0	0	0	0	0	0	1	15788	912	32	2		2	TEX13A	23	104464656	Silent	SNP	C	TCGA-A3-3376-01A-02D-1421-08		104464656	50805904	53	1162											
CYB5RL	606495	broad.mit.edu	37	1	54661136	54661136	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	54661136	T	T	54661136	3	4	22	1	0	0	0	0	1	0	0	0	4132	1357	47	4	817	4	CYB5RL	1	54661136	Missense_Mutation	SNP	G	TCGA-A3-3380-01A-01D-0966-08		54661136	194589485	1	1163											
PRCC	5546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156767110	156767110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	156767110	C	A	156767110	3	1	22	1	0	0	0	0	1	0	0	0	12457	595	21	4	1388	4	PRCC	1	156767110	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08	102105974	156767110	92483511	2	1164											
PROKR1	10887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	68882419	68882419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	68882419	C	T	68882419	3	4	22	1	0	0	0	0	1	0	0	0	12562	768	27	1	899	1	PROKR1	2	68882419	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08		68882419	174316954	3	1165											
DQX1	165545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	74745642	74745642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	74745642	C	T	74745642	3	4	22	1	0	0	0	0	1	0	0	0	4753	594	21	2	72	2	DQX1	2	74745642	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08	5863223	74745642	168453731	4	1166											
IDH1	3417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	209104723	209104723	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	C	209104723	A	C	209104723	4	2	22	1	0	0	0	0	0	1	0	0	7501	224	8	5	401	5	IDH1	2	209104723	Nonsense_Mutation	SNP	A	TCGA-A3-3380-01A-01D-0966-08	134359081	209104723	34094650	5	1167											
C2orf67	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	211018808	211018808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	211018808	G	T	211018808	3	4	22	1	0	0	0	0	1	0	0	0	2188	1386	48	4	2520	4	C2orf67	2	211018808	Missense_Mutation	SNP	G	TCGA-A3-3380-01A-01D-0966-08	1914085	211018808	32180565	6	1168											
VHL	7428	hgsc.bcm.edu	37	3	10183851	10183851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	C	10183851	G	C	10183851	3	2	22	1	0	0	0	0	1	0	0	0	17174	1087	38	4	322	4	VHL	3	10183851	Missense_Mutation	SNP	G	TCGA-A3-3380-01A-01D-0966-08		10183851	187838579	7	1169											
ZBTB49	166793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	4322531	4322531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	4322531	C	A	4322531	3	1	22	1	0	0	0	0	1	0	0	0	17562	796	28	4	1812	4	ZBTB49	4	4322531	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08		4322531	186831745	8	1170											
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	5462929	5462929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	5462929	T	G	5462929	3	3	22	1	0	0	0	0	1	0	0	0	8209	1406	49	5	3532	5	KIAA0947	5	5462929	Missense_Mutation	SNP	T	TCGA-A3-3380-01A-01D-0966-08		5462929	175452331	9	1171											
ISOC1	51015	broad.mit.edu	37	5	128430566	128430566	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	128430566	A	A	128430566	3	1	22	1	0	0	0	0	1	0	0	0	7869	768	27	4	109	4	ISOC1	5	128430566	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08	122967637	128430566	52484694	10	1172											
PCDHGA3	56112	broad.mit.edu	37	5	140725628	140725628	+	Silent	SNP	C	G	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	140725628	G	G	140725628	2	3	22	1	0	0	0	0	0	0	0	1	11562	697	25	4		4	PCDHGA3	5	140725628	Silent	SNP	C	TCGA-A3-3380-01A-01D-0966-08	12295062	140725628	40189632	11	1173											
B3GAT2	135152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	71665632	71665632	+	Silent	SNP	C	C	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	71665632	C	T	71665632	2	4	22	1	0	0	0	0	0	0	0	1	1254	697	25	2		2	B3GAT2	6	71665632	Silent	SNP	C	TCGA-A3-3380-01A-01D-0966-08		71665632	99449435	12	1174											
PTPN12	5782	hgsc.bcm.edu;ucsc.edu	37	7	77256343	77256343	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	-	77256343	T	-	77256343	7	5	22	1	0	1	0	1	0	0	0	0	12792	1722	60	0	1397	0	PTPN12	7	77256343	Frame_Shift_Del	DEL	T	TCGA-A3-3380-01A-01D-0966-08		77256343	81882320	13	1175											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82583288	82583288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	82583288	C	A	82583288	3	1	22	1	0	0	0	0	1	0	0	0	11590	680	24	4	8548	4	PCLO	7	82583288	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08	5326945	82583288	76555375	14	1176											
CTSB	1508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	11703250	11703250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	11703250	C	T	11703250	3	4	22	1	0	0	0	0	1	0	0	0	4032	768	27	1	185	1	CTSB	8	11703250	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08		11703250	134660772	15	1177											
PLAG1	5324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	57080032	57080032	+	Silent	SNP	G	G	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	57080032	G	T	57080032	2	4	22	1	0	0	0	0	0	0	0	1	12025	1219	43	4		4	PLAG1	8	57080032	Silent	SNP	G	TCGA-A3-3380-01A-01D-0966-08	45376782	57080032	89283990	16	1178											
KCNK18	338567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	118969176	118969176	+	Missense_Mutation	SNP	G	G	A	rs139101102		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	118969176	G	A	118969176	3	1	22	1	0	0	0	0	1	0	0	0	8072	1087	38	1	531	1	KCNK18	10	118969176	Missense_Mutation	SNP	G	TCGA-A3-3380-01A-01D-0966-08		118969176	16565571	17	1179											
OR4C13	283092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	49974717	49974717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	49974717	C	T	49974717	3	4	22	1	0	0	0	0	1	0	0	0	11054	855	30	2	745	2	OR4C13	11	49974717	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08		49974717	85031799	18	1180											
C2CD3	26005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	73850649	73850649	+	Splice_Site	SNP	C	C	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	73850649	C	T	73850649	5	4	22	1	0	0	0	0	0	0	1	0	2156	521	18	2	5295	2	C2CD3	11	73850649	Splice_Site	SNP	C	TCGA-A3-3380-01A-01D-0966-08	23875932	73850649	61155867	19	1181											
LPCAT3	10162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7087581	7087581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	7087581	A	G	7087581	3	3	22	1	0	0	0	0	1	0	0	0	8919	159	6	3	517	3	LPCAT3	12	7087581	Missense_Mutation	SNP	A	TCGA-A3-3380-01A-01D-0966-08		7087581	126764314	20	1182											
CLSTN3	9746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7288076	7288076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	7288076	G	T	7288076	3	4	22	1	0	0	0	0	1	0	0	0	3565	933	33	4	551	4	CLSTN3	12	7288076	Missense_Mutation	SNP	G	TCGA-A3-3380-01A-01D-0966-08	200495	7288076	126563819	21	1183	17	2									
CLSTN3	9746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7288077	7288077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	7288077	A	G	7288077	3	3	22	1	0	0	0	0	1	0	0	0	3565	333	12	3	552	3	CLSTN3	12	7288077	Missense_Mutation	SNP	A	TCGA-A3-3380-01A-01D-0966-08	1	7288077	126563818	22	1184	17	2									
GRIN2B	2904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	13769424	13769424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	13769424	C	A	13769424	3	1	22	1	0	0	0	0	1	0	0	0	6787	854	30	4	3197	4	GRIN2B	12	13769424	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08	6481347	13769424	120082471	23	1185											
OR10AD1	121275	hgsc.bcm.edu	37	12	48596138	48596139	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	48596139	-	G	48596138	7	5	22	1	0	1	1	0	0	0	0	0	10903	1580	55	0	19	0	OR10AD1	12	48596138	Frame_Shift_Ins	INS	-	TCGA-A3-3380-01A-01D-0966-08	34826714	48596138	85255757	24	1186											
RND1	27289	hgsc.bcm.edu	37	12	49259528	49259529	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	49259529	-	G	49259528	7	5	22	1	0	1	1	0	0	0	0	0	13432	1580	55	0	695	0	RND1	12	49259528	Frame_Shift_Ins	INS	-	TCGA-A3-3380-01A-01D-0966-08	663390	49259528	84592367	25	1187											
KCNRG	283518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	50594550	50594550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	50594550	A	G	50594550	3	3	22	1	0	0	0	0	1	0	0	0	8094	304	11	3	887	3	KCNRG	13	50594550	Missense_Mutation	SNP	A	TCGA-A3-3380-01A-01D-0966-08		50594550	64575328	26	1188											
OR10G2	26534	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	22102295	22102295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	C	22102295	G	C	22102295	3	2	22	1	0	0	0	0	1	0	0	0	10906	1261	44	4	231	4	OR10G2	14	22102295	Missense_Mutation	SNP	G	TCGA-A3-3380-01A-01D-0966-08		22102295	85247245	27	1189											
RNF151	146310	broad.mit.edu	37	16	2018623	2018623	+	Silent	SNP	C	A	A	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	2018623	A	A	2018623	2	1	22	1	0	0	0	0	0	0	0	1	13465	784	28	4		4	RNF151	16	2018623	Silent	SNP	C	TCGA-A3-3380-01A-01D-0966-08		2018623	88336130	28	1190											
PKD1	5310	broad.mit.edu	37	16	2168149	2168149	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	2168149	G	G	2168149	3	3	22	1	0	0	0	0	1	0	0	0	11970	661	23	4	12235	4	PKD1	16	2168149	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08	149526	2168149	88186604	29	1191											
ACSF3	197322	broad.mit.edu;hgsc.bcm.edu	37	16	89167563	89167563	+	Silent	SNP	G	G	A	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	89167563	G	A	89167563	2	1	22	1	0	0	0	0	0	0	0	1	176	1103	39	1		1	ACSF3	16	89167563	Silent	SNP	G	TCGA-A3-3380-01A-01D-0966-08	86999414	89167563	1187190	30	1192											
ACLY	47	broad.mit.edu;hgsc.bcm.edu	37	17	40049295	40049295	+	Missense_Mutation	SNP	T	T	G	rs144101604	alternate_allele	TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	40049295	T	G	40049295	3	3	22	1	0	0	0	0	1	0	0	0	143	1638	57	5	1773	5	ACLY	17	40049295	Missense_Mutation	SNP	T	TCGA-A3-3380-01A-01D-0966-08		40049295	41145915	31	1193											
SPAG9	9043	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	49098649	49098649	+	Silent	SNP	T	T	C	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	C	49098649	T	C	49098649	2	2	22	1	0	0	0	0	0	0	0	1	14998	1799	63	3		3	SPAG9	17	49098649	Silent	SNP	T	TCGA-A3-3380-01A-01D-0966-08	9049354	49098649	32096561	32	1194											
CNDP1	84735	broad.mit.edu	37	18	72201786	72201786	+	Translation_Start_Site	SNP	G	A	A	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	72201786	A	A	72201786	1	1	22	1	0	0	0	0	0	0	0	0	3595	1160	40	1		1	CNDP1	18	72201786	Translation_Start_Site	SNP	G	TCGA-A3-3380-01A-01D-0966-08		72201786	5875462	33	1195											
WIZ	58525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15537959	15537959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	A	15537959	C	A	15537959	3	1	22	1	0	0	0	0	1	0	0	0	17387	912	32	4	1489	4	WIZ	19	15537959	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08		15537959	43591024	34	1196											
ZNF836	162962	broad.mit.edu;hgsc.bcm.edu	37	19	52658790	52658790	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	C	52658790	G	C	52658790	3	2	22	1	0	0	0	0	1	0	0	0	18199	1174	41	4	666	4	ZNF836	19	52658790	Missense_Mutation	SNP	G	TCGA-A3-3380-01A-01D-0966-08	37120831	52658790	6470193	35	1197											
TOB2	10766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	41832382	41832382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	41832382	A	G	41832382	3	3	22	1	0	0	0	0	1	0	0	0	16360	304	11	3	70	3	TOB2	22	41832382	Missense_Mutation	SNP	A	TCGA-A3-3380-01A-01D-0966-08		41832382	9472184	36	1198											
SBF1	6305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50893343	50893343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	50893343	C	T	50893343	3	4	22	1	0	0	0	0	1	0	0	0	13871	681	24	2	997	2	SBF1	22	50893343	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08	9060961	50893343	411223	37	1199											
PRICKLE3	4007	hgsc.bcm.edu	37	X	49032303	49032304	+	In_Frame_Ins	INS	-	-	GTGATG	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	GTGATG	49032304	-	GTGATG	49032303	7	5	22	1	0	1	1	0	0	0	0	0	12498	1812	63	0	284	0	PRICKLE3	23	49032303	In_Frame_Ins	INS	-	TCGA-A3-3380-01A-01D-0966-08		49032303	106238257	38	1200											
FGD1	2245	broad.mit.edu	37	X	54491893	54491893	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	54491893	T	T	54491893	3	4	22	1	0	0	0	0	1	0	0	0	5839	855	30	2	1302	2	FGD1	23	54491893	Missense_Mutation	SNP	C	TCGA-A3-3380-01A-01D-0966-08	5459590	54491893	100778667	39	1201											
ZXDB	158586	broad.mit.edu	37	X	57619421	57619421	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	G	57619421	G	G	57619421	3	3	22	1	0	0	0	0	1	0	0	0	18263	275	10	3	942	3	ZXDB	23	57619421	Missense_Mutation	SNP	A	TCGA-A3-3380-01A-01D-0966-08	3127528	57619421	97651139	40	1202											
ABCD1	215	broad.mit.edu	37	X	153008982	153008982	+	Silent	SNP	C	T	T	novel		TCGA-A3-3380-01A-01D-0966-08	TCGA-A3-3380-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	269d4e2a-a425-4fde-bb51-5880f7f8b2b9	2664fe7c-61ae-40cc-9411-7b4cd795169a	T	153008982	T	T	153008982	2	4	22	1	0	0	0	0	0	0	0	1	60	755	27	1		1	ABCD1	23	153008982	Silent	SNP	C	TCGA-A3-3380-01A-01D-0966-08	95389561	153008982	2261578	41	1203											
CTPS	0	hgsc.bcm.edu	37	1	41471734	41471734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	G	41471734	A	G	41471734	3	3	23	1	0	0	0	0	1	0	0	0	4024	391	14	3	1310	3	CTPS	1	41471734	Missense_Mutation	SNP	A	TCGA-A3-3383-01A-01D-0966-08		41471734	207778887	1	1204											
TRIM33	51592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	114967253	114967253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	114967253	C	A	114967253	3	1	23	1	0	0	0	0	1	0	0	0	16519	739	26	4	1607	4	TRIM33	1	114967253	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	73495519	114967253	134283368	2	1205											
GRHL1	29841	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	10101473	10101473	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	C	10101473	G	C	10101473	3	2	23	1	0	0	0	0	1	0	0	0	6770	1290	45	4	591	4	GRHL1	2	10101473	Missense_Mutation	SNP	G	TCGA-A3-3383-01A-01D-0966-08		10101473	233097900	3	1206											
TMEM214	54867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27256957	27256957	+	Silent	SNP	C	C	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	27256957	C	A	27256957	2	1	23	1	0	0	0	0	0	0	0	1	16149	610	22	4		4	TMEM214	2	27256957	Silent	SNP	C	TCGA-A3-3383-01A-01D-0966-08	17155484	27256957	215942416	4	1207											
PPM1B	5495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44457623	44457623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	G	44457623	T	G	44457623	3	3	23	1	0	0	0	0	1	0	0	0	12346	1432	50	5	1257	5	PPM1B	2	44457623	Missense_Mutation	SNP	T	TCGA-A3-3383-01A-01D-0966-08	17200666	44457623	198741750	5	1208											
UXS1	80146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	106717553	106717553	+	Silent	SNP	C	C	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	106717553	C	A	106717553	2	1	23	1	0	0	0	0	0	0	0	1	17121	581	21	4		4	UXS1	2	106717553	Silent	SNP	C	TCGA-A3-3383-01A-01D-0966-08	62259930	106717553	136481820	6	1209											
RBM43	375287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152112099	152112099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	C	152112099	T	C	152112099	3	2	23	1	0	0	0	0	1	0	0	0	13150	1396	49	3	923	3	RBM43	2	152112099	Missense_Mutation	SNP	T	TCGA-A3-3383-01A-01D-0966-08	45394546	152112099	91087274	7	1210											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191488	10191488	+	Nonsense_Mutation	SNP	C	C	T	rs5030818	bycluster	TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	10191488	C	T	10191488	4	4	23	1	0	0	0	0	0	1	0	0	17174	760	27	1	491	1	VHL	3	10191488	Nonsense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08		10191488	187830942	8	1211											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47162162	47162162	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	47162162	G	A	47162162	4	1	23	1	0	0	0	0	0	1	0	0	14144	1066	37	1	3806	1	SETD2	3	47162162	Nonsense_Mutation	SNP	G	TCGA-A3-3383-01A-01D-0966-08	36970674	47162162	150860268	9	1212											
COPB2	9276	hgsc.bcm.edu;ucsc.edu	37	3	139090606	139090606	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	-	139090606	A	-	139090606	7	5	23	1	0	1	0	1	0	0	0	0	3731	127	5	0	1608	0	COPB2	3	139090606	Frame_Shift_Del	DEL	A	TCGA-A3-3383-01A-01D-0966-08	91928444	139090606	58931824	10	1213											
MAEA	10296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	1305934	1305934	+	Silent	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	1305934	C	T	1305934	2	4	23	1	0	0	0	0	0	0	0	1	9160	767	27	1		1	MAEA	4	1305934	Silent	SNP	C	TCGA-A3-3383-01A-01D-0966-08		1305934	189848342	11	1214											
GRPEL1	80273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	7062876	7062876	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	7062876	G	A	7062876	4	1	23	1	0	0	0	0	0	1	0	0	6813	1386	48	2	290	2	GRPEL1	4	7062876	Nonsense_Mutation	SNP	G	TCGA-A3-3383-01A-01D-0966-08	5756942	7062876	184091400	12	1215											
SLIT2	9353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	20599967	20599967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	20599967	G	A	20599967	3	1	23	1	0	0	0	0	1	0	0	0	14753	1145	40	1	3771	1	SLIT2	4	20599967	Missense_Mutation	SNP	G	TCGA-A3-3383-01A-01D-0966-08	13537091	20599967	170554309	13	1216											
PITX2	5308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	111539589	111539589	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	111539589	A	T	111539589	3	4	23	1	0	0	0	0	1	0	0	0	11962	304	11	5	311	5	PITX2	4	111539589	Missense_Mutation	SNP	A	TCGA-A3-3383-01A-01D-0966-08	90939622	111539589	79614687	14	1217											
NUP153	9972	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	17662260	17662260	+	Silent	SNP	T	T	C	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	C	17662260	T	C	17662260	2	2	23	1	0	0	0	0	0	0	0	1	10762	1722	60	3		3	NUP153	6	17662260	Silent	SNP	T	TCGA-A3-3383-01A-01D-0966-08		17662260	153452807	15	1218											
ZKSCAN3	80317	hgsc.bcm.edu;ucsc.edu	37	6	28334004	28334004	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	-	28334004	T	-	28334004	7	5	23	1	0	1	0	1	0	0	0	0	17700	1493	52	0	1577	0	ZKSCAN3	6	28334004	Frame_Shift_Del	DEL	T	TCGA-A3-3383-01A-01D-0966-08	10671744	28334004	142781063	16	1219											
COL11A2	1302	broad.mit.edu;hgsc.bcm.edu	37	6	33140387	33140387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	33140387	C	A	33140387	3	1	23	1	0	0	0	0	1	0	0	0	3670	623	22	4	2504	4	COL11A2	6	33140387	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	4806383	33140387	137974680	17	1220											
WDR46	9277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33254931	33254931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	33254931	C	T	33254931	3	4	23	1	0	0	0	0	1	0	0	0	17311	594	21	2	908	2	WDR46	6	33254931	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	114544	33254931	137860136	18	1221											
ASCC3	10973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	101095127	101095127	+	Silent	SNP	C	C	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	101095127	C	A	101095127	2	1	23	1	0	0	0	0	0	0	0	1	1033	813	29	4		4	ASCC3	6	101095127	Silent	SNP	C	TCGA-A3-3383-01A-01D-0966-08	67840196	101095127	70019940	19	1222											
AIM1	202	hgsc.bcm.edu;ucsc.edu	37	6	107011654	107011655	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	-	107011655	TG	-	107011654	7	5	23	1	0	1	0	1	0	0	0	0	430	1580	55	0	5004	0	AIM1	6	107011654	Frame_Shift_Del	DEL	TG	TCGA-A3-3383-01A-01D-0966-08	5916527	107011654	64103413	20	1223											
POM121C	100101267	broad.mit.edu;ucsc.edu	37	7	75054987	75054987	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	G	75054987	G	G	75054987	3	3	23	1	0	0	0	0	1	0	0	0	12247	922	32	4	2414	4	POM121C	7	75054987	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08		75054987	84083676	21	1224											
DOCK4	9732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	111555908	111555908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	111555908	C	T	111555908	3	4	23	1	0	0	0	0	1	0	0	0	4691	681	24	2	4942	2	DOCK4	7	111555908	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	36500921	111555908	47582755	22	1225											
NUP205	23165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	135307659	135307659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	135307659	C	T	135307659	3	4	23	1	0	0	0	0	1	0	0	0	10766	826	29	2	4587	2	NUP205	7	135307659	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	23751751	135307659	23831004	23	1226											
PTGES	9536	broad.mit.edu	37	9	132502051	132502051	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	C	132502051	C	C	132502051	3	2	23	1	0	0	0	0	1	0	0	0	12757	188	7	5	164	5	PTGES	9	132502051	Missense_Mutation	SNP	A	TCGA-A3-3383-01A-01D-0966-08		132502051	8711380	24	1227											
TAF3	83860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	8006092	8006092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	8006092	G	T	8006092	3	4	23	1	0	0	0	0	1	0	0	0	15537	1377	48	4	629	4	TAF3	10	8006092	Missense_Mutation	SNP	G	TCGA-A3-3383-01A-01D-0966-08		8006092	127528655	25	1228											
GPR158	57512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	25887796	25887796	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	C	25887796	A	C	25887796	3	2	23	1	0	0	0	0	1	0	0	0	6670	217	8	5	3283	5	GPR158	10	25887796	Missense_Mutation	SNP	A	TCGA-A3-3383-01A-01D-0966-08	17881704	25887796	109646951	26	1229											
RHOBTB1	9886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	62670706	62670706	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	62670706	A	T	62670706	3	4	23	1	0	0	0	0	1	0	0	0	13346	246	9	5	1887	5	RHOBTB1	10	62670706	Missense_Mutation	SNP	A	TCGA-A3-3383-01A-01D-0966-08	36782910	62670706	72864041	27	1230											
DNAJB12	54788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	74100574	74100574	+	Silent	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	74100574	C	T	74100574	2	4	23	1	0	0	0	0	0	0	0	1	4619	738	26	2		2	DNAJB12	10	74100574	Silent	SNP	C	TCGA-A3-3383-01A-01D-0966-08	11429868	74100574	61434173	28	1231											
GRID1	2894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	87966299	87966299	+	Silent	SNP	G	G	C	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	C	87966299	G	C	87966299	2	2	23	1	0	0	0	0	0	0	0	1	6778	929	33	4		4	GRID1	10	87966299	Silent	SNP	G	TCGA-A3-3383-01A-01D-0966-08	13865725	87966299	47568448	29	1232											
B4GALNT4	338707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	375649	375649	+	Silent	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	375649	C	T	375649	2	4	23	1	0	0	0	0	0	0	0	1	1269	668	24	2		2	B4GALNT4	11	375649	Silent	SNP	C	TCGA-A3-3383-01A-01D-0966-08		375649	134630867	30	1233											
TRIM3	10612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6479378	6479378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	6479378	C	T	6479378	3	4	23	1	0	0	0	0	1	0	0	0	16516	826	29	2	1994	2	TRIM3	11	6479378	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	6103729	6479378	128527138	31	1234											
CSTF3	1479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	33123767	33123767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	33123767	C	T	33123767	3	4	23	1	0	0	0	0	1	0	0	0	3988	797	28	2	1419	2	CSTF3	11	33123767	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	26644389	33123767	101882749	32	1235											
PCF11	51585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	82877725	82877725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	G	82877725	A	G	82877725	3	3	23	1	0	0	0	0	1	0	0	0	11580	64	3	3	1804	3	PCF11	11	82877725	Missense_Mutation	SNP	A	TCGA-A3-3383-01A-01D-0966-08	49753958	82877725	52128791	33	1236											
OR8G1	26494	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124121146	124121146	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	124121146	A	T	124121146	3	4	23	1	0	0	0	0	1	0	0	0	11241	420	15	5	726	5	OR8G1	11	124121146	Missense_Mutation	SNP	A	TCGA-A3-3383-01A-01D-0966-08	41243421	124121146	10885370	34	1237	18	2									
OR8G1	26494	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124121147	124121147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	124121147	G	A	124121147	3	1	23	1	0	0	0	0	1	0	0	0	11241	971	34	2	727	2	OR8G1	11	124121147	Missense_Mutation	SNP	G	TCGA-A3-3383-01A-01D-0966-08	1	124121147	10885369	35	1238	18	2									
STYK1	55359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10783738	10783738	+	Silent	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	10783738	C	T	10783738	2	4	23	1	0	0	0	0	0	0	0	1	15371	912	32	2		2	STYK1	12	10783738	Silent	SNP	C	TCGA-A3-3383-01A-01D-0966-08		10783738	123068157	36	1239											
ITPR2	3709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	26848561	26848561	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	C	26848561	G	C	26848561	3	2	23	1	0	0	0	0	1	0	0	0	7928	1203	42	4	7323	4	ITPR2	12	26848561	Missense_Mutation	SNP	G	TCGA-A3-3383-01A-01D-0966-08	16064823	26848561	107003334	37	1240	19	2									
ITPR2	3709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	26848562	26848562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	26848562	C	T	26848562	3	4	23	1	0	0	0	0	1	0	0	0	7928	710	25	2	7324	2	ITPR2	12	26848562	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	1	26848562	107003333	38	1241	19	2									
WDR66	144406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	122369710	122369710	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	122369710	A	T	122369710	3	4	23	1	0	0	0	0	1	0	0	0	17329	246	9	5	816	5	WDR66	12	122369710	Missense_Mutation	SNP	A	TCGA-A3-3383-01A-01D-0966-08	95521148	122369710	11482185	39	1242											
BUB1B	701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40505655	40505655	+	Silent	SNP	G	G	A	rs146821149	alternate_allele	TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	40505655	G	A	40505655	2	1	23	1	0	0	0	0	0	0	0	1	1573	1252	44	2		2	BUB1B	15	40505655	Silent	SNP	G	TCGA-A3-3383-01A-01D-0966-08		40505655	62025737	40	1243											
CORO7	79585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4412076	4412076	+	Silent	SNP	G	G	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	4412076	G	T	4412076	2	4	23	1	0	0	0	0	0	0	0	1	3761	1335	47	4		4	CORO7	16	4412076	Silent	SNP	G	TCGA-A3-3383-01A-01D-0966-08		4412076	85942677	41	1244											
RBBP6	5930	broad.mit.edu;hgsc.bcm.edu	37	16	24564874	24564874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	24564874	C	A	24564874	3	1	23	1	0	0	0	0	1	0	0	0	13116	478	17	4	412	4	RBBP6	16	24564874	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	20152798	24564874	65789879	42	1245											
ZNF646	9726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31089750	31089751	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	31089751	-	T	31089750	7	5	23	1	0	1	1	0	0	0	0	0	18074	101	4	0	2107	0	ZNF646	16	31089750	Frame_Shift_Ins	INS	-	TCGA-A3-3383-01A-01D-0966-08	6524876	31089750	59265003	43	1246											
MYH2	4620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10442759	10442759	+	Splice_Site	SNP	A	A	G	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	G	10442759	A	G	10442759	5	3	23	1	0	0	0	0	0	0	1	0	10042	405	14	3	4669	3	MYH2	17	10442759	Splice_Site	SNP	A	TCGA-A3-3383-01A-01D-0966-08		10442759	70752451	44	1247											
ACLY	47	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40028034	40028034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	40028034	C	T	40028034	3	4	23	1	0	0	0	0	1	0	0	0	143	797	28	2	480	2	ACLY	17	40028034	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	29585275	40028034	41167176	45	1248											
COL5A3	50509	broad.mit.edu	37	19	10116808	10116808	+	Missense_Mutation	SNP	C	T	T	rs144021089	byfrequency	TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	10116808	T	T	10116808	3	4	23	1	0	0	0	0	1	0	0	0	3700	652	23	1	5313	1	COL5A3	19	10116808	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08		10116808	49012175	46	1249											
LDLR	3949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11224382	11224382	+	Silent	SNP	G	G	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	11224382	G	A	11224382	2	1	23	1	0	0	0	0	0	0	0	1	8711	1132	40	1		1	LDLR	19	11224382	Silent	SNP	G	TCGA-A3-3383-01A-01D-0966-08	1107574	11224382	47904601	47	1250											
WDR83	84292	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12783897	12783897	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	A	12783897	T	A	12783897	3	1	23	1	0	0	0	0	1	0	0	0	17344	1551	54	5	676	5	WDR83	19	12783897	Missense_Mutation	SNP	T	TCGA-A3-3383-01A-01D-0966-08	1559515	12783897	46345086	48	1251											
SIPA1L3	23094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38573642	38573642	+	Silent	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	38573642	C	T	38573642	2	4	23	1	0	0	0	0	0	0	0	1	14344	581	21	2		2	SIPA1L3	19	38573642	Silent	SNP	C	TCGA-A3-3383-01A-01D-0966-08	25789745	38573642	20555341	49	1252											
ZNF600	162966	hgsc.bcm.edu;ucsc.edu	37	19	53270877	53270877	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	-	53270877	A	-	53270877	7	5	23	1	0	1	0	1	0	0	0	0	18042	126	5	0	2040	0	ZNF600	19	53270877	Frame_Shift_Del	DEL	A	TCGA-A3-3383-01A-01D-0966-08	14697235	53270877	5858106	50	1253											
FCAR	2204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55399613	55399613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	55399613	C	T	55399613	3	4	23	1	0	0	0	0	1	0	0	0	5780	623	22	2	615	2	FCAR	19	55399613	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08	2128736	55399613	3729370	51	1254											
EYA2	2139	hgsc.bcm.edu;ucsc.edu	37	20	45771755	45771757	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	-	45771757	GCA	-	45771755	7	5	23	1	0	1	0	1	0	0	0	0	5331	1319	46	0	980	0	EYA2	20	45771755	In_Frame_Del	DEL	GCA	TCGA-A3-3383-01A-01D-0966-08		45771755	17253765	52	1255											
NCAPH2	29781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50954874	50954874	+	Splice_Site	SNP	A	A	C	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	C	50954874	A	C	50954874	5	2	23	1	0	0	0	0	0	0	1	0	10217	202	7	5	113	5	NCAPH2	22	50954874	Splice_Site	SNP	A	TCGA-A3-3383-01A-01D-0966-08		50954874	349692	53	1256											
SHROOM2	357	broad.mit.edu;hgsc.bcm.edu	37	X	9914789	9914789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3383-01A-01D-0966-08	TCGA-A3-3383-11A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ea06f57-c7fa-4881-b9c0-dd3f9c1c4ca0	c1c63fb7-47c4-4d5c-ad01-6a51f605475e	T	9914789	C	T	9914789	3	4	23	1	0	0	0	0	1	0	0	0	14307	652	23	1	4701	1	SHROOM2	23	9914789	Missense_Mutation	SNP	C	TCGA-A3-3383-01A-01D-0966-08		9914789	145355771	54	1257											
FAM40A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110589317	110589317	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	110589317	A	C	110589317	3	2	24	1	0	0	0	0	1	0	0	0	5567	333	12	5	1482	5	FAM40A	1	110589317	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08		110589317	138661304	1	1258											
SLC6A17	388662	broad.mit.edu;ucsc.edu	37	1	110709707	110709708	+	Frame_Shift_Del	DEL	GG	-	-	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	-	110709708	-	-	110709707	7	5	24	1	0	1	0	1	0	0	0	0	14693	991	35	0	158	0	SLC6A17	1	110709707	Frame_Shift_Del	DEL	GG	TCGA-A3-3385-01A-02D-1421-08	120390	110709707	138540914	2	1259											
ASH1L	55870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155308160	155308160	+	Silent	SNP	G	G	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	155308160	G	C	155308160	2	2	24	1	0	0	0	0	0	0	0	1	1041	958	34	4		4	ASH1L	1	155308160	Silent	SNP	G	TCGA-A3-3385-01A-02D-1421-08	44598453	155308160	93942461	3	1260											
TBX19	9095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	168269666	168269666	+	Silent	SNP	C	C	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	168269666	C	T	168269666	2	4	24	1	0	0	0	0	0	0	0	1	15666	506	18	2		2	TBX19	1	168269666	Silent	SNP	C	TCGA-A3-3385-01A-02D-1421-08	12961506	168269666	80980955	4	1261											
DDX59	83479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200617572	200617572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	200617572	G	A	200617572	3	1	24	1	0	0	0	0	1	0	0	0	4378	1348	47	2	276	2	DDX59	1	200617572	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	32347906	200617572	48633049	5	1262											
TIMM17A	10440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201926640	201926640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	201926640	G	T	201926640	3	4	24	1	0	0	0	0	1	0	0	0	15920	1188	41	4	138	4	TIMM17A	1	201926640	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	1309068	201926640	47323981	6	1263											
MSH2	4436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	47703619	47703619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	47703619	T	C	47703619	3	2	24	1	0	0	0	0	1	0	0	0	9877	1580	55	3	2169	3	MSH2	2	47703619	Missense_Mutation	SNP	T	TCGA-A3-3385-01A-02D-1421-08		47703619	195495754	7	1264											
VPS54	51542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	64196097	64196097	+	Silent	SNP	T	T	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	64196097	T	A	64196097	2	1	24	1	0	0	0	0	0	0	0	1	17228	1625	57	5		5	VPS54	2	64196097	Silent	SNP	T	TCGA-A3-3385-01A-02D-1421-08	16492478	64196097	179003276	8	1265											
TGFBRAP1	9392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	105914998	105914998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	105914998	T	C	105914998	3	2	24	1	0	0	0	0	1	0	0	0	15836	1763	61	3	1769	3	TGFBRAP1	2	105914998	Missense_Mutation	SNP	T	TCGA-A3-3385-01A-02D-1421-08	41718901	105914998	137284375	9	1266											
DPP10	57628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	116485484	116485484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	116485484	T	A	116485484	3	1	24	1	0	0	0	0	1	0	0	0	4729	1751	61	5	870	5	DPP10	2	116485484	Missense_Mutation	SNP	T	TCGA-A3-3385-01A-02D-1421-08	10570486	116485484	126713889	10	1267	20	2									
DPP10	57628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	116485485	116485485	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	116485485	A	C	116485485	3	2	24	1	0	0	0	0	1	0	0	0	4729	362	13	5	871	5	DPP10	2	116485485	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08	1	116485485	126713888	11	1268	20	2									
ZEB2	9839	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	145157350	145157350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	145157350	G	T	145157350	3	4	24	1	0	0	0	0	1	0	0	0	17636	1368	48	4	2252	4	ZEB2	2	145157350	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	28671865	145157350	98042023	12	1269											
CWC22	57703	hgsc.bcm.edu	37	2	180851432	180851432	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	180851432	T	A	180851432	3	1	24	1	0	0	0	0	1	0	0	0	4070	1464	51	5	2598	5	CWC22	2	180851432	Missense_Mutation	SNP	T	TCGA-A3-3385-01A-02D-1421-08	35694082	180851432	62347941	13	1270											
SPHKAP	80309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228881372	228881372	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	G	228881372	C	G	228881372	3	3	24	1	0	0	0	0	1	0	0	0	15060	913	32	4	928	4	SPHKAP	2	228881372	Missense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08	48029940	228881372	14318001	14	1271											
VHL	7428	broad.mit.edu	37	3	10183829	10183830	+	Frame_Shift_Del	DEL	AC	-	-	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq;PacBio			Illumina GAIIx	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	-	10183830	-	-	10183829	7	5	24	1	0	1	0	1	0	0	0	0	17174	43	2	0	300	0	VHL	3	10183829	Frame_Shift_Del	DEL	AC	TCGA-A3-3385-01A-02D-1421-08		10183829	187838601	15	1272											
CAPN7	23473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	15292631	15292631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	15292631	T	A	15292631	3	1	24	1	0	0	0	0	1	0	0	0	2633	1841	64	5	2388	5	CAPN7	3	15292631	Missense_Mutation	SNP	T	TCGA-A3-3385-01A-02D-1421-08	5108802	15292631	182729799	16	1273											
TPPP	11076	broad.mit.edu;hgsc.bcm.edu	37	5	678108	678108	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	678108	G	T	678108	4	4	24	1	0	0	0	0	0	1	0	0	16425	1059	37	4	603	4	TPPP	5	678108	Nonsense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08		678108	180237152	17	1274											
LMBRD2	92255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	36117868	36117868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	36117868	G	A	36117868	3	1	24	1	0	0	0	0	1	0	0	0	8850	1319	46	2	852	2	LMBRD2	5	36117868	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	35439760	36117868	144797392	18	1275											
NIPBL	25836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	37006527	37006527	+	Silent	SNP	G	G	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	37006527	G	A	37006527	2	1	24	1	0	0	0	0	0	0	0	1	10435	1103	39	1		1	NIPBL	5	37006527	Silent	SNP	G	TCGA-A3-3385-01A-02D-1421-08	888659	37006527	143908733	19	1276											
RICTOR	253260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	38955727	38955727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	38955727	C	T	38955727	3	4	24	1	0	0	0	0	1	0	0	0	13371	507	18	2	2599	2	RICTOR	5	38955727	Missense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08	1949200	38955727	141959533	20	1277											
C5orf44	80006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	64933559	64933559	+	Silent	SNP	C	C	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	64933559	C	T	64933559	2	4	24	1	0	0	0	0	0	0	0	1	2305	816	29	2		2	C5orf44	5	64933559	Silent	SNP	C	TCGA-A3-3385-01A-02D-1421-08	25977832	64933559	115981701	21	1278											
PCDHGB4	8641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140768184	140768184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	140768184	G	C	140768184	3	2	24	1	0	0	0	0	1	0	0	0	11572	942	33	4	735	4	PCDHGB4	5	140768184	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	75834625	140768184	40147076	22	1279											
BEND6	221336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56883335	56883335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	56883335	G	T	56883335	3	4	24	1	0	0	0	0	1	0	0	0	1402	1174	41	4	847	4	BEND6	6	56883335	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08		56883335	114231732	23	1280											
C6orf221	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	74073548	74073548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	74073548	C	T	74073548	3	4	24	1	0	0	0	0	1	0	0	0	2357	884	31	1	629	1	C6orf221	6	74073548	Missense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08	17190213	74073548	97041519	24	1281											
LCA5	167691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	80203392	80203392	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	80203392	C	A	80203392	4	1	24	1	0	0	0	0	0	1	0	0	8663	835	29	4	1317	4	LCA5	6	80203392	Nonsense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08	6129844	80203392	90911675	25	1282											
HACE1	57531	broad.mit.edu;hgsc.bcm.edu	37	6	105192486	105192486	+	Splice_Site	SNP	C	C	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	105192486	C	A	105192486	5	1	24	1	0	0	0	0	0	0	1	0	6947	695	24	4	402	4	HACE1	6	105192486	Splice_Site	SNP	C	TCGA-A3-3385-01A-02D-1421-08	24989094	105192486	65922581	26	1283											
LAMA2	3908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	129663519	129663519	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	129663519	G	C	129663519	3	2	24	1	0	0	0	0	1	0	0	0	8613	1377	48	4	4461	4	LAMA2	6	129663519	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	24471033	129663519	41451548	27	1284											
EPB41L2	2037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	131190764	131190764	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	131190764	A	C	131190764	3	2	24	1	0	0	0	0	1	0	0	0	5155	43	2	5	491	5	EPB41L2	6	131190764	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08	1527245	131190764	39924303	28	1285											
HERPUD2	64224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	35678058	35678058	+	Silent	SNP	C	C	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	35678058	C	A	35678058	2	1	24	1	0	0	0	0	0	0	0	1	7071	726	26	4		4	HERPUD2	7	35678058	Silent	SNP	C	TCGA-A3-3385-01A-02D-1421-08		35678058	123460605	29	1286											
BAZ1B	9031	broad.mit.edu;hgsc.bcm.edu	37	7	72892732	72892732	+	Silent	SNP	C	C	G	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	G	72892732	C	G	72892732	2	3	24	1	0	0	0	0	0	0	0	1	1330	813	29	4		4	BAZ1B	7	72892732	Silent	SNP	C	TCGA-A3-3385-01A-02D-1421-08	37214674	72892732	86245931	30	1287											
ZSCAN21	7589	hgsc.bcm.edu;ucsc.edu	37	7	99661552	99661552	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	-	99661552	A	-	99661552	7	5	24	1	0	1	0	1	0	0	0	0	18245	246	9	0	744	0	ZSCAN21	7	99661552	Frame_Shift_Del	DEL	A	TCGA-A3-3385-01A-02D-1421-08	26768820	99661552	59477111	31	1288											
TFEC	22797	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	115624462	115624462	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	115624462	G	C	115624462	3	2	24	1	0	0	0	0	1	0	0	0	15814	942	33	4	1037	4	TFEC	7	115624462	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	15962910	115624462	43514201	32	1289											
KIF13B	23303	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	29018370	29018370	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	-	29018370	C	-	29018370	7	5	24	1	0	1	0	1	0	0	0	0	8282	796	28	0	4308	0	KIF13B	8	29018370	Frame_Shift_Del	DEL	C	TCGA-A3-3385-01A-02D-1421-08		29018370	117345652	33	1290											
FGFR1	2260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38314935	38314935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	38314935	C	A	38314935	3	1	24	1	0	0	0	0	1	0	0	0	5870	624	22	4	2817	4	FGFR1	8	38314935	Missense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08	9296565	38314935	108049087	34	1291											
PENK	5179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	57353861	57353861	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	G	57353861	T	G	57353861	3	3	24	1	0	0	0	0	1	0	0	0	11734	1838	64	5	33	5	PENK	8	57353861	Missense_Mutation	SNP	T	TCGA-A3-3385-01A-02D-1421-08	19038926	57353861	89010161	35	1292											
ZFAND1	79752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	82626242	82626242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	G	82626242	A	G	82626242	3	3	24	1	0	0	0	0	1	0	0	0	17638	217	8	3	475	3	ZFAND1	8	82626242	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08	25272381	82626242	63737780	36	1293											
RNF20	56254	broad.mit.edu	37	9	104324630	104324630	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	104324630	C	C	104324630	3	2	24	1	0	0	0	0	1	0	0	0	13486	159	6	5	2928	5	RNF20	9	104324630	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08		104324630	36888801	37	1294											
NOTCH1	4851	broad.mit.edu	37	9	139396756	139396756	+	Silent	SNP	C	A	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	139396756	A	A	139396756	2	1	24	1	0	0	0	0	0	0	0	1	10554	610	22	4		4	NOTCH1	9	139396756	Silent	SNP	C	TCGA-A3-3385-01A-02D-1421-08	35072126	139396756	1816675	38	1295											
SVIL	6840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	29769552	29769552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	29769552	T	C	29769552	3	2	24	1	0	0	0	0	1	0	0	0	15433	1406	49	3	1393	3	SVIL	10	29769552	Missense_Mutation	SNP	T	TCGA-A3-3385-01A-02D-1421-08		29769552	105765195	39	1296											
SIRT1	23411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	69676090	69676091	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	69676091	-	A	69676090	7	5	24	1	0	1	1	0	0	0	0	0	14350	1291	45	0	2018	0	SIRT1	10	69676090	Frame_Shift_Ins	INS	-	TCGA-A3-3385-01A-02D-1421-08	39906538	69676090	65858657	40	1297											
NLRP10	338322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	7981799	7981799	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	7981799	A	C	7981799	3	2	24	1	0	0	0	0	1	0	0	0	10479	98	4	5	611	5	NLRP10	11	7981799	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08		7981799	127024717	41	1298											
DEPDC4	120863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100660755	100660755	+	Silent	SNP	G	G	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	100660755	G	A	100660755	2	1	24	1	0	0	0	0	0	0	0	1	4443	962	34	2		2	DEPDC4	12	100660755	Silent	SNP	G	TCGA-A3-3385-01A-02D-1421-08		100660755	33191140	42	1299											
NCOR2	9612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124858994	124858994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	124858994	C	T	124858994	3	4	24	1	0	0	0	0	1	0	0	0	10243	623	22	2	5501	2	NCOR2	12	124858994	Missense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08	24198239	124858994	8992901	43	1300											
SCARB1	949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	125267275	125267275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	G	125267275	A	G	125267275	3	3	24	1	0	0	0	0	1	0	0	0	13894	217	8	3	173	3	SCARB1	12	125267275	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08	408281	125267275	8584620	44	1301											
SHISA2	387914	hgsc.bcm.edu	37	13	26624935	26624935	+	Missense_Mutation	SNP	C	C	T	rs111516934	bycluster;byfrequency;by1000genomes	TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	26624935	C	T	26624935	3	4	24	1	0	0	0	0	1	0	0	0	14293	739	26	2	716	2	SHISA2	13	26624935	Missense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08		26624935	88544943	45	1302											
NDRG2	57447	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21486946	21486946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	21486946	G	T	21486946	3	4	24	1	0	0	0	0	1	0	0	0	10259	1252	44	4	346	4	NDRG2	14	21486946	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08		21486946	85862594	46	1303											
GTF2A1	2957	broad.mit.edu;hgsc.bcm.edu	37	14	81659180	81659180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	81659180	G	T	81659180	3	4	24	1	0	0	0	0	1	0	0	0	6859	962	34	4	526	4	GTF2A1	14	81659180	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	60172234	81659180	25690360	47	1304											
C15orf52	388115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40628801	40628801	+	Silent	SNP	C	C	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	40628801	C	T	40628801	2	4	24	1	0	0	0	0	0	0	0	1	1802	680	24	2		2	C15orf52	15	40628801	Silent	SNP	C	TCGA-A3-3385-01A-02D-1421-08		40628801	61902591	48	1305											
TNK1	8711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7291994	7291994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	7291994	G	A	7291994	3	1	24	1	0	0	0	0	1	0	0	0	16329	1058	37	1	1785	1	TNK1	17	7291994	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08		7291994	73903216	49	1306											
MYH2	4620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10447217	10447217	+	Splice_Site	SNP	A	A	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	10447217	A	T	10447217	5	4	24	1	0	0	0	0	0	0	1	0	10042	173	6	5	5311	5	MYH2	17	10447217	Splice_Site	SNP	A	TCGA-A3-3385-01A-02D-1421-08	3155223	10447217	70747993	50	1307											
MYH3	4621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10535182	10535182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	10535182	G	A	10535182	3	1	24	1	0	0	0	0	1	0	0	0	10043	1087	38	1	742	1	MYH3	17	10535182	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	87965	10535182	70660028	51	1308											
ERBB2	2064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37876087	37876087	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	37876087	G	C	37876087	3	2	24	1	0	0	0	0	1	0	0	0	5208	1014	35	4	2008	4	ERBB2	17	37876087	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	27340905	37876087	43319123	52	1309											
MIDN	90007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1257108	1257108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	1257108	C	T	1257108	3	4	24	1	0	0	0	0	1	0	0	0	9586	652	23	1	1270	1	MIDN	19	1257108	Missense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08		1257108	57871875	53	1310											
NOTCH3	4854	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15298087	15298087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	15298087	C	A	15298087	3	1	24	1	0	0	0	0	1	0	0	0	10557	594	21	4	5388	4	NOTCH3	19	15298087	Missense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08	14040979	15298087	43830896	54	1311											
ZFP82	284406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36884269	36884269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	C	36884269	G	C	36884269	3	2	24	1	0	0	0	0	1	0	0	0	17665	942	33	4	629	4	ZFP82	19	36884269	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	21586182	36884269	22244714	55	1312											
ZNF260	339324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37005751	37005751	+	Silent	SNP	A	A	G	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	G	37005751	A	G	37005751	2	3	24	1	0	0	0	0	0	0	0	1	17814	446	16	3		3	ZNF260	19	37005751	Silent	SNP	A	TCGA-A3-3385-01A-02D-1421-08	121482	37005751	22123232	56	1313											
PRX	57716	broad.mit.edu	37	19	40900148	40900148	+	Silent	SNP	G	T	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	40900148	T	T	40900148	2	4	24	1	0	0	0	0	0	0	0	1	12652	1115	39	4		4	PRX	19	40900148	Silent	SNP	G	TCGA-A3-3385-01A-02D-1421-08	3894397	40900148	18228835	57	1314											
GPR4	2828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46094848	46094848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	46094848	A	T	46094848	3	4	24	1	0	0	0	0	1	0	0	0	6701	72	3	5	815	5	GPR4	19	46094848	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08	5194700	46094848	13034135	58	1315											
CCDC9	26093	hgsc.bcm.edu	37	19	47774666	47774668	+	In_Frame_Del	DEL	GAG	GAG	-	rs138370983	bycluster;by1000genomes	TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	-	47774668	GAG	-	47774666	7	5	24	1	0	1	0	1	0	0	0	0	2869	1291	45	0	1369	0	CCDC9	19	47774666	In_Frame_Del	DEL	GAG	TCGA-A3-3385-01A-02D-1421-08	1679818	47774666	11354317	59	1316											
TUBB1	81027	broad.mit.edu;ucsc.edu	37	20	57598805	57598805	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	57598805	T	T	57598805	3	4	24	1	0	0	0	0	1	0	0	0	16765	304	11	5	337	5	TUBB1	20	57598805	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08		57598805	5426715	60	1317											
ZDHHC8	29801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	20127299	20127299	+	Silent	SNP	C	C	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	20127299	C	A	20127299	2	1	24	1	0	0	0	0	0	0	0	1	17633	784	28	4		4	ZDHHC8	22	20127299	Silent	SNP	C	TCGA-A3-3385-01A-02D-1421-08		20127299	31177267	61	1318											
HMGXB4	10042	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	35659854	35659854	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	-	35659854	T	-	35659854	7	5	24	1	0	1	0	1	0	0	0	0	7246	1490	52	0	256	0	HMGXB4	22	35659854	Frame_Shift_Del	DEL	T	TCGA-A3-3385-01A-02D-1421-08	15532555	35659854	15644712	62	1319											
LDOC1L	84247	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	44893405	44893405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	44893405	C	T	44893405	3	4	24	1	0	0	0	0	1	0	0	0	8717	797	28	2	691	2	LDOC1L	22	44893405	Missense_Mutation	SNP	C	TCGA-A3-3385-01A-02D-1421-08	9233551	44893405	6411161	63	1320											
MAP7D2	256714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	20081684	20081684	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	A	20081684	G	A	20081684	4	1	24	1	0	0	0	0	0	1	0	0	9275	1328	46	2	2157	2	MAP7D2	23	20081684	Nonsense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08		20081684	135188876	64	1321											
GPR174	84636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	78427224	78427224	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	-	78427224	A	-	78427224	7	5	24	1	0	1	0	1	0	0	0	0	6679	349	13	0	722	0	GPR174	23	78427224	Frame_Shift_Del	DEL	A	TCGA-A3-3385-01A-02D-1421-08	58345540	78427224	76843336	65	1322											
ZCCHC12	170261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	117960298	117960298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	117960298	G	T	117960298	3	4	24	1	0	0	0	0	1	0	0	0	17593	1029	36	4	1093	4	ZCCHC12	23	117960298	Missense_Mutation	SNP	G	TCGA-A3-3385-01A-02D-1421-08	39533074	117960298	37310262	66	1323											
PRRG3	79057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	150868604	150868604	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A3-3385-01A-02D-1421-08	TCGA-A3-3385-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0eb5edde-0ee0-4fc9-bc23-3015fc05258b	dad5faae-e650-4b72-8baa-5a7f732a136d	T	150868604	A	T	150868604	3	4	24	1	0	0	0	0	1	0	0	0	12617	69	3	5	150	5	PRRG3	23	150868604	Missense_Mutation	SNP	A	TCGA-A3-3385-01A-02D-1421-08	32908306	150868604	4401956	67	1324											
PPP1R13B	23368	hgsc.bcm.edu	37	14	104206456	104206456	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3385-01A-02W-1475-10	TCGA-A3-3385-11A-01W-1475-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	b1764a44-9403-49f3-bc2b-058664033927	d39be864-eb2d-4c56-8179-a567e6ad49c0	-	104206456	T	-	104206456	7	5	25	1	0	1	0	1	0	0	0	0	12367	1493	52	0	999	0	PPP1R13B	14	104206456	Frame_Shift_Del	DEL	T	TCGA-A3-3385-01A-02W-1475-10		104206456	3143084	1	1325											
UBE2J2	118424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	1198752	1198752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	1198752	C	T	1198752	3	4	26	1	0	0	0	0	1	0	0	0	16873	884	31	1	653	1	UBE2J2	1	1198752	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10		1198752	248051869	1	1326											
UBE4B	10277	broad.mit.edu;ucsc.edu	37	1	10221342	10221342	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	10221342	T	T	10221342	3	4	26	1	0	0	0	0	1	0	0	0	16895	643	23	1	3286	1	UBE4B	1	10221342	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	9022590	10221342	239029279	2	1327											
PADI6	353238	broad.mit.edu;ucsc.edu	37	1	17720899	17720899	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	17720899	A	A	17720899	3	1	26	1	0	0	0	0	1	0	0	0	11388	1232	43	2	1329	2	PADI6	1	17720899	Missense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10	7499557	17720899	231529722	3	1328											
AHDC1	27245	broad.mit.edu;ucsc.edu	37	1	27874531	27874531	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	27874531	T	T	27874531	3	4	26	1	0	0	0	0	1	0	0	0	412	884	31	1	719	1	AHDC1	1	27874531	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	10153632	27874531	221376090	4	1329											
ZSCAN20	7579	broad.mit.edu;ucsc.edu	37	1	33960693	33960693	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	33960693	G	G	33960693	3	3	26	1	0	0	0	0	1	0	0	0	18244	159	6	3	2775	3	ZSCAN20	1	33960693	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	6086162	33960693	215289928	5	1330											
C1orf94	84970	broad.mit.edu;ucsc.edu	37	1	34684328	34684328	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	34684328	G	G	34684328	3	3	26	1	0	0	0	0	1	0	0	0	2073	449	16	3	1789	3	C1orf94	1	34684328	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	723635	34684328	214566293	6	1331											
ZMYM1	79830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35578915	35578915	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	35578915	T	A	35578915	3	1	26	1	0	0	0	0	1	0	0	0	17711	1841	64	5	1518	5	ZMYM1	1	35578915	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	894587	35578915	213671706	7	1332											
CSF3R	1441	broad.mit.edu;ucsc.edu	37	1	36939104	36939104	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	36939104	G	G	36939104	3	3	26	1	0	0	0	0	1	0	0	0	3939	595	21	4	2143	4	CSF3R	1	36939104	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	1360189	36939104	212311517	8	1333											
GJA9	81025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39340771	39340771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	39340771	A	C	39340771	3	2	26	1	0	0	0	0	1	0	0	0	6413	246	9	5	551	5	GJA9	1	39340771	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	2401667	39340771	209909850	9	1334											
ZNF684	127396	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	41012841	41012841	+	Silent	SNP	T	T	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	41012841	T	C	41012841	2	2	26	1	0	0	0	0	0	0	0	1	18103	1413	49	3		3	ZNF684	1	41012841	Silent	SNP	T	TCGA-A3-3387-01A-01D-1534-10	1672070	41012841	208237780	10	1335											
DOCK7	85440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62979390	62979390	+	Silent	SNP	A	A	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	62979390	A	G	62979390	2	3	26	1	0	0	0	0	0	0	0	1	4694	456	16	3		3	DOCK7	1	62979390	Silent	SNP	A	TCGA-A3-3387-01A-01D-1534-10	21966549	62979390	186271231	11	1336											
INSRR	3645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156814334	156814334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	156814334	T	C	156814334	3	2	26	1	0	0	0	0	1	0	0	0	7781	1638	57	3	1271	3	INSRR	1	156814334	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	93834944	156814334	92436287	12	1337											
C1orf129	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	170985418	170985418	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	170985418	A	C	170985418	3	2	26	1	0	0	0	0	1	0	0	0	1998	131	5	5	2037	5	C1orf129	1	170985418	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	14171084	170985418	78265203	13	1338											
HMCN1	83872	broad.mit.edu	37	1	185964002	185964002	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	185964002	T	T	185964002	3	4	26	1	0	0	0	0	1	0	0	0	7227	301	11	5	3655	5	HMCN1	1	185964002	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	14978584	185964002	63286619	14	1339											
PGBD5	79605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	230461073	230461073	+	Silent	SNP	G	G	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	230461073	G	A	230461073	2	1	26	1	0	0	0	0	0	0	0	1	11791	1140	40	1		1	PGBD5	1	230461073	Silent	SNP	G	TCGA-A3-3387-01A-01D-1534-10	44497071	230461073	18789548	15	1340											
SNTG2	54221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1094047	1094047	+	Silent	SNP	T	T	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	1094047	T	G	1094047	2	3	26	1	0	0	0	0	0	0	0	1	14888	1567	55	5		5	SNTG2	2	1094047	Silent	SNP	T	TCGA-A3-3387-01A-01D-1534-10		1094047	242105326	16	1341											
VSNL1	7447	broad.mit.edu;ucsc.edu	37	2	17773470	17773470	+	Silent	SNP	A	G	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	17773470	G	G	17773470	2	3	26	1	0	0	0	0	0	0	0	1	17239	349	13	3		3	VSNL1	2	17773470	Silent	SNP	A	TCGA-A3-3387-01A-01D-1534-10	16679423	17773470	225425903	17	1342											
ABI2	10152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	204267389	204267389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	204267389	C	A	204267389	3	1	26	1	0	0	0	0	1	0	0	0	89	681	24	4	949	4	ABI2	2	204267389	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	186493919	204267389	38931984	18	1343											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643561	52643561	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	52643561	G	A	52643561	4	1	26	1	0	0	0	0	0	1	0	0	11498	1299	45	2	2625	2	PBRM1	3	52643561	Nonsense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10		52643561	145378869	19	1344											
CASR	846	broad.mit.edu;hgsc.bcm.edu	37	3	122003164	122003164	+	Missense_Mutation	SNP	T	T	A	rs104893701	bycluster;alternate_allele	TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	122003164	T	A	122003164	3	1	26	1	0	0	0	0	1	0	0	0	2684	1783	62	5	2415	5	CASR	3	122003164	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	69359603	122003164	76019266	20	1345											
PARP14	54625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	122418640	122418640	+	Silent	SNP	A	A	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	122418640	A	T	122418640	2	4	26	1	0	0	0	0	0	0	0	1	11465	352	13	5		5	PARP14	3	122418640	Silent	SNP	A	TCGA-A3-3387-01A-01D-1534-10	415476	122418640	75603790	21	1346											
SLC33A1	9197	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	155571204	155571204	+	Missense_Mutation	SNP	T	T	A	rs148999356	alternate_allele	TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	155571204	T	A	155571204	3	1	26	1	0	0	0	0	1	0	0	0	14579	1464	51	5	1090	5	SLC33A1	3	155571204	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	33152564	155571204	42451226	22	1347											
LAMP3	27074	broad.mit.edu;ucsc.edu	37	3	182871951	182871951	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	182871951	C	C	182871951	3	2	26	1	0	0	0	0	1	0	0	0	8626	1725	60	3	992	3	LAMP3	3	182871951	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	27300747	182871951	15150479	23	1348											
BCL6	604	broad.mit.edu	37	3	187446247	187446247	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	187446247	A	A	187446247	4	1	26	1	0	0	0	0	0	1	0	0	1376	1299	45	2	699	2	BCL6	3	187446247	Nonsense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10	4574296	187446247	10576183	24	1349											
MUC4	4585	hgsc.bcm.edu	37	3	195513158	195513158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	195513158	C	A	195513158	3	1	26	1	0	0	0	0	1	0	0	0	9985	884	31	4		4	MUC4	3	195513158	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	8066911	195513158	2509272	25	1350											
C3orf34	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	196434643	196434643	+	Nonsense_Mutation	SNP	C	C	A	rs139813132	by1000genomes;alternate_allele	TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	196434643	C	A	196434643	4	1	26	1	0	0	0	0	0	1	0	0	2226	864	30	4	224	4	C3orf34	3	196434643	Nonsense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	921485	196434643	1587787	26	1351											
CPLX1	10815	broad.mit.edu	37	4	780370	780370	+	Silent	SNP	C	T	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	780370	T	T	780370	2	4	26	1	0	0	0	0	0	0	0	1	3806	680	24	2		2	CPLX1	4	780370	Silent	SNP	C	TCGA-A3-3387-01A-01D-1534-10		780370	190373906	27	1352											
PDE5A	8654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	120442144	120442144	+	Silent	SNP	A	A	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	120442144	A	G	120442144	2	3	26	1	0	0	0	0	0	0	0	1	11651	214	8	3		3	PDE5A	4	120442144	Silent	SNP	A	TCGA-A3-3387-01A-01D-1534-10	119661774	120442144	70712132	28	1353											
ACCN5	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	156757933	156757933	+	Missense_Mutation	SNP	T	T	G	rs142739848	alternate_allele	TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	156757933	T	G	156757933	3	3	26	1	0	0	0	0	1	0	0	0	132	1490	52	5	386	5	ACCN5	4	156757933	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	36315789	156757933	34396343	29	1354											
TRIO	7204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	14497119	14497119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	14497119	C	A	14497119	3	1	26	1	0	0	0	0	1	0	0	0	16564	913	32	4	8210	4	TRIO	5	14497119	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10		14497119	166418141	30	1355											
RANBP3L	202151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	36255599	36255599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	36255599	C	A	36255599	3	1	26	1	0	0	0	0	1	0	0	0	13043	826	29	4	416	4	RANBP3L	5	36255599	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	21758480	36255599	144659661	31	1356											
HEATR7B2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	41045851	41045851	+	Silent	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	41045851	C	T	41045851	2	4	26	1	0	0	0	0	0	0	0	1	7042	912	32	2		2	HEATR7B2	5	41045851	Silent	SNP	C	TCGA-A3-3387-01A-01D-1534-10	4790252	41045851	139869409	32	1357											
CDC25C	995	broad.mit.edu	37	5	137621505	137621505	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	137621505	A	A	137621505	3	1	26	1	0	0	0	0	1	0	0	0	3066	710	25	4	127	4	CDC25C	5	137621505	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	96575654	137621505	43293755	33	1358											
ANKHD1	54882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139876554	139876554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	139876554	G	T	139876554	3	4	26	1	0	0	0	0	1	0	0	0	628	1261	44	4	2859	4	ANKHD1	5	139876554	Missense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10	2255049	139876554	41038706	34	1359											
CRISP1	167	broad.mit.edu;ucsc.edu	37	6	49819726	49819726	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	49819726	T	T	49819726	3	4	26	1	0	0	0	0	1	0	0	0	3881	1368	48	4	590	4	CRISP1	6	49819726	Missense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10		49819726	121295341	35	1360											
EEF1A1	1915	broad.mit.edu;hgsc.bcm.edu	37	6	74227570	74227570	+	Missense_Mutation	SNP	A	A	T	rs11556678	alternate_allele	TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	74227570	A	T	74227570	3	4	26	1	0	0	0	0	1	0	0	0	4925	275	10	5	40	5	EEF1A1	6	74227570	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	24407844	74227570	96887497	36	1361											
ROS1	6098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	117674152	117674152	+	Splice_Site	SNP	C	C	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	117674152	C	A	117674152	5	1	26	1	0	0	0	0	0	0	1	0	13544	521	18	4	2793	4	ROS1	6	117674152	Splice_Site	SNP	C	TCGA-A3-3387-01A-01D-1534-10	43446582	117674152	53440915	37	1362											
ECT2L	345930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	139206666	139206666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	139206666	C	A	139206666	3	1	26	1	0	0	0	0	1	0	0	0	4904	854	30	4	2110	4	ECT2L	6	139206666	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	21532514	139206666	31908401	38	1363											
RAET1E	135250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	150210680	150210680	+	Silent	SNP	G	G	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	150210680	G	A	150210680	2	1	26	1	0	0	0	0	0	0	0	1	13012	1335	47	2		2	RAET1E	6	150210680	Silent	SNP	G	TCGA-A3-3387-01A-01D-1534-10	11004014	150210680	20904387	39	1364											
HECW1	23072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	43548639	43548639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	43548639	G	T	43548639	3	4	26	1	0	0	0	0	1	0	0	0	7049	1174	41	4	4024	4	HECW1	7	43548639	Missense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10		43548639	115590024	40	1365											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	48353926	48353926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	48353926	C	A	48353926	3	1	26	1	0	0	0	0	1	0	0	0	31	913	32	4	9710	4	ABCA13	7	48353926	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	4805287	48353926	110784737	41	1366											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82545945	82545945	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	82545945	T	G	82545945	3	3	26	1	0	0	0	0	1	0	0	0	11590	1551	54	5	4164	5	PCLO	7	82545945	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	34192019	82545945	76592718	42	1367											
ZNF804B	219578	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	88965798	88965798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	88965798	C	T	88965798	3	4	26	1	0	0	0	0	1	0	0	0	18183	710	25	2	3516	2	ZNF804B	7	88965798	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	6419853	88965798	70172865	43	1368											
CLEC2L	154790	broad.mit.edu;ucsc.edu	37	7	139221070	139221070	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	139221070	C	C	139221070	3	2	26	1	0	0	0	0	1	0	0	0	3511	217	8	5	247	5	CLEC2L	7	139221070	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	50255272	139221070	19917593	44	1369											
MKRN1	23608	broad.mit.edu;hgsc.bcm.edu	37	7	140155662	140155662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	140155662	A	G	140155662	3	3	26	1	0	0	0	0	1	0	0	0	9613	101	4	3	435	3	MKRN1	7	140155662	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	934592	140155662	18983001	45	1370											
CUL1	8454	hgsc.bcm.edu;ucsc.edu	37	7	148486899	148486899	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	-	148486899	C	-	148486899	7	5	26	1	0	1	0	1	0	0	0	0	4056	478	17	0	1709	0	CUL1	7	148486899	Frame_Shift_Del	DEL	C	TCGA-A3-3387-01A-01D-1534-10	8331237	148486899	10651764	46	1371											
TRAM1	23471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	71508498	71508498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	71508498	G	A	71508498	3	1	26	1	0	0	0	0	1	0	0	0	16463	1159	40	1	667	1	TRAM1	8	71508498	Missense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10		71508498	74855524	47	1372											
TG	7038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	133911118	133911118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	133911118	C	A	133911118	3	1	26	1	0	0	0	0	1	0	0	0	15825	594	21	4	3347	4	TG	8	133911118	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	62402620	133911118	12452904	48	1373											
KIAA1432	57589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	5763718	5763718	+	Silent	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	5763718	C	T	5763718	2	4	26	1	0	0	0	0	0	0	0	1	8240	854	30	2		2	KIAA1432	9	5763718	Silent	SNP	C	TCGA-A3-3387-01A-01D-1534-10		5763718	135449713	49	1374											
GOLM1	51280	broad.mit.edu;ucsc.edu	37	9	88648293	88648293	+	Silent	SNP	G	A	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	88648293	A	A	88648293	2	1	26	1	0	0	0	0	0	0	0	1	6574	1020	36	2		2	GOLM1	9	88648293	Silent	SNP	G	TCGA-A3-3387-01A-01D-1534-10	82884575	88648293	52565138	50	1375											
GPSM1	26086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139228923	139228923	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	139228923	G	C	139228923	3	2	26	1	0	0	0	0	1	0	0	0	6741	943	33	4	94	4	GPSM1	9	139228923	Missense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10	50580630	139228923	1984508	51	1376											
PTCHD3	374308	broad.mit.edu	37	10	27702296	27702296	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	27702296	G	G	27702296	3	3	26	1	0	0	0	0	1	0	0	0	12744	304	11	3	1435	3	PTCHD3	10	27702296	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10		27702296	107832451	52	1377											
ZDHHC6	64429	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	114201991	114201991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	114201991	A	G	114201991	3	3	26	1	0	0	0	0	1	0	0	0	17631	14	1	3	795	3	ZDHHC6	10	114201991	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	86499695	114201991	21332756	53	1378											
OR5D18	219438	hgsc.bcm.edu;ucsc.edu	37	11	55587894	55587896	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	-	55587896	CAA	-	55587894	7	5	26	1	0	1	0	1	0	0	0	0	11164	581	21	0	791	0	OR5D18	11	55587894	In_Frame_Del	DEL	CAA	TCGA-A3-3387-01A-01D-1534-10		55587894	79418622	54	1379											
APOA5	116519	hgsc.bcm.edu;ucsc.edu	37	11	116660943	116660944	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	116660944	-	C	116660943	7	5	26	1	0	1	1	0	0	0	0	0	784	1306	46	0	102	0	APOA5	11	116660943	Frame_Shift_Ins	INS	-	TCGA-A3-3387-01A-01D-1534-10	61073049	116660943	18345573	55	1380											
SLC6A12	6539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	300301	300301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	300301	C	T	300301	3	4	26	1	0	0	0	0	1	0	0	0	14688	739	26	2	70	2	SLC6A12	12	300301	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10		300301	133551594	56	1381											
SLC6A13	6540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	336752	336752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	336752	T	C	336752	3	2	26	1	0	0	0	0	1	0	0	0	14689	1609	56	3	926	3	SLC6A13	12	336752	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	36451	336752	133515143	57	1382											
MANSC1	54682	hgsc.bcm.edu;ucsc.edu	37	12	12491487	12491487	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	-	12491487	T	-	12491487	7	5	26	1	0	1	0	1	0	0	0	0	9231	1606	56	0	1072	0	MANSC1	12	12491487	Frame_Shift_Del	DEL	T	TCGA-A3-3387-01A-01D-1534-10	12154735	12491487	121360408	58	1383											
GRIN2B	2904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	13906469	13906469	+	Silent	SNP	C	C	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	13906469	C	A	13906469	2	1	26	1	0	0	0	0	0	0	0	1	6787	610	22	4		4	GRIN2B	12	13906469	Silent	SNP	C	TCGA-A3-3387-01A-01D-1534-10	1414982	13906469	119945426	59	1384	21	2									
GRIN2B	2904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	13906470	13906470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	13906470	C	T	13906470	3	4	26	1	0	0	0	0	1	0	0	0	6787	623	22	2	3707	2	GRIN2B	12	13906470	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	1	13906470	119945425	60	1385	21	2									
UBC	7316	broad.mit.edu;hgsc.bcm.edu	37	12	125397153	125397153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	125397153	T	C	125397153	3	2	26	1	0	0	0	0	1	0	0	0	16854	1667	58	3	896	3	UBC	12	125397153	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	111490683	125397153	8454742	61	1386											
COL4A1	1282	broad.mit.edu	37	13	110833684	110833684	+	Silent	SNP	C	T	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	110833684	T	T	110833684	2	4	26	1	0	0	0	0	0	0	0	1	3691	639	23	1		1	COL4A1	13	110833684	Silent	SNP	C	TCGA-A3-3387-01A-01D-1534-10		110833684	4336194	62	1387											
PSMB5	5693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23504076	23504076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	23504076	G	T	23504076	3	4	26	1	0	0	0	0	1	0	0	0	12690	1078	38	4	877	4	PSMB5	14	23504076	Missense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10		23504076	83845464	63	1388											
JAG2	3714	broad.mit.edu	37	14	105624079	105624079	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	105624079	A	A	105624079	4	1	26	1	0	0	0	0	0	1	0	0	7942	864	30	4	3373	4	JAG2	14	105624079	Nonsense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	82120003	105624079	1725461	64	1389											
AKAP13	11214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	86123604	86123604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	86123604	A	G	86123604	3	3	26	1	0	0	0	0	1	0	0	0	449	101	4	3	2327	3	AKAP13	15	86123604	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10		86123604	16407788	65	1390											
ZC3H7A	29066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	11845212	11845212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	11845212	G	C	11845212	3	2	26	1	0	0	0	0	1	0	0	0	17584	1020	36	4	42	4	ZC3H7A	16	11845212	Missense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10		11845212	78509541	66	1391											
RSL1D1	26156	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	11935566	11935566	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	11935566	T	G	11935566	3	3	26	1	0	0	0	0	1	0	0	0	13713	1754	61	5	643	5	RSL1D1	16	11935566	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	90354	11935566	78419187	67	1392											
ZC3H18	124245	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	88690383	88690383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	88690383	C	T	88690383	3	4	26	1	0	0	0	0	1	0	0	0	17580	893	31	1	1849	1	ZC3H18	16	88690383	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	76754817	88690383	1664370	68	1393											
FANCA	2175	broad.mit.edu;ucsc.edu	37	16	89836339	89836339	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	89836339	T	T	89836339	3	4	26	1	0	0	0	0	1	0	0	0	5669	623	22	2	2029	2	FANCA	16	89836339	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10	1145956	89836339	518414	69	1394											
MYH13	8735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10261145	10261145	+	Splice_Site	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	10261145	C	T	10261145	5	4	26	1	0	0	0	0	0	0	1	0	10039	695	24	2	5307	2	MYH13	17	10261145	Splice_Site	SNP	C	TCGA-A3-3387-01A-01D-1534-10		10261145	70934065	70	1395											
HEXIM1	10614	broad.mit.edu	37	17	43226612	43226612	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	43226612	C	C	43226612	3	2	26	1	0	0	0	0	1	0	0	0	7083	391	14	5	57	5	HEXIM1	17	43226612	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	32965467	43226612	37968598	71	1396											
DSEL	92126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	65181609	65181609	+	Silent	SNP	A	A	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	65181609	A	T	65181609	2	4	26	1	0	0	0	0	0	0	0	1	4777	291	11	5		5	DSEL	18	65181609	Silent	SNP	A	TCGA-A3-3387-01A-01D-1534-10		65181609	12895639	72	1397											
TUBB4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6496076	6496076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	6496076	G	T	6496076	3	4	26	1	0	0	0	0	1	0	0	0	16770	1174	41	4	904	4	TUBB4	19	6496076	Missense_Mutation	SNP	G	TCGA-A3-3387-01A-01D-1534-10		6496076	52632907	73	1398											
FAM187B	148109	broad.mit.edu	37	19	35716084	35716084	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	-	35716084	-	-	35716084	7	5	26	1	0	1	0	1	0	0	0	0	5517	991	35	0	359	0	FAM187B	19	35716084	Frame_Shift_Del	DEL	G	TCGA-A3-3387-01A-01D-1534-10	29220008	35716084	23412899	74	1399											
ZNF570	148268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37975663	37975663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	G	37975663	A	G	37975663	3	3	26	1	0	0	0	0	1	0	0	0	18014	217	8	3	1153	3	ZNF570	19	37975663	Missense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	2259579	37975663	21153320	75	1400											
PSG11	5680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	43519423	43519423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	C	43519423	T	C	43519423	3	2	26	1	0	0	0	0	1	0	0	0	12664	1580	55	3	206	3	PSG11	19	43519423	Missense_Mutation	SNP	T	TCGA-A3-3387-01A-01D-1534-10	5543760	43519423	15609560	76	1401											
ZFP112	7771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44833539	44833539	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	44833539	A	T	44833539	4	4	26	1	0	0	0	0	0	1	0	0	17650	456	16	5	1956	5	ZFP112	19	44833539	Nonsense_Mutation	SNP	A	TCGA-A3-3387-01A-01D-1534-10	1314116	44833539	14295444	77	1402											
PCNA	5111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	5099285	5099285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	5099285	C	T	5099285	3	4	26	1	0	0	0	0	1	0	0	0	11595	855	30	2	443	2	PCNA	20	5099285	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10		5099285	57926235	78	1403											
BAGE2	85319	broad.mit.edu	37	21	11026722	11026722	+	Splice_Site	SNP	C	A	A	rs2698612		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	A	11026722	A	A	11026722	5	1	26	1	0	0	0	0	0	0	1	0	1292	521	18	4		4	BAGE2	21	11026722	Splice_Site	SNP	C	TCGA-A3-3387-01A-01D-1534-10		11026722	37103173	79	1404											
MICAL3	57553	broad.mit.edu;ucsc.edu	37	22	18382309	18382309	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	18382309	T	T	18382309	3	4	26	1	0	0	0	0	1	0	0	0	9578	826	29	2	5996	2	MICAL3	22	18382309	Missense_Mutation	SNP	C	TCGA-A3-3387-01A-01D-1534-10		18382309	32922257	80	1405											
GPR64	10149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	19026097	19026097	+	Splice_Site	SNP	C	C	T	novel		TCGA-A3-3387-01A-01D-1534-10	TCGA-A3-3387-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e9e149ff-79e0-48f9-9262-1fbbad865e77	e6bb2386-fa1d-4b73-b853-ce904e1fd667	T	19026097	C	T	19026097	5	4	26	1	0	0	0	0	0	0	1	0	6712	521	18	2	1530	2	GPR64	23	19026097	Splice_Site	SNP	C	TCGA-A3-3387-01A-01D-1534-10		19026097	136244463	81	1406											
WDR64	128025	hgsc.bcm.edu	37	1	241875146	241875146	+	Silent	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	241875146	T	C	241875146	2	2	27	1	0	0	0	0	0	0	0	1	17327	1838	64	3		3	WDR64	1	241875146	Silent	SNP	T	TCGA-A4-7286-01A-11D-2136-08		241875146	7375475	1	1407											
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24991159	24991159	+	Silent	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	24991159	C	T	24991159	2	4	27	1	0	0	0	0	0	0	0	1	10235	680	24	2		2	NCOA1	2	24991159	Silent	SNP	C	TCGA-A4-7286-01A-11D-2136-08		24991159	218208214	2	1408											
RTKN	6242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74657398	74657398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	74657398	A	G	74657398	3	3	27	1	0	0	0	0	1	0	0	0	13735	72	3	3	1197	3	RTKN	2	74657398	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	49666239	74657398	168541975	3	1409											
SPOPL	339745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	139308572	139308572	+	Silent	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	139308572	A	G	139308572	2	3	27	1	0	0	0	0	0	0	0	1	15097	117	5	3		3	SPOPL	2	139308572	Silent	SNP	A	TCGA-A4-7286-01A-11D-2136-08	64651174	139308572	103890801	4	1410											
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	143718222	143718222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	143718222	C	G	143718222	3	3	27	1	0	0	0	0	1	0	0	0	8594	845	30	4	638	4	KYNU	2	143718222	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	4409650	143718222	99481151	5	1411											
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160665004	160665004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	160665004	T	C	160665004	3	2	27	1	0	0	0	0	1	0	0	0	9106	1725	60	3	402	3	LY75	2	160665004	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	16946782	160665004	82534369	6	1412											
ABCA12	26154	broad.mit.edu;bcgsc.ca	37	2	215821466	215821466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	215821466	T	C	215821466	3	2	27	1	0	0	0	0	1	0	0	0	30	1406	49	3	1681	3	ABCA12	2	215821466	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	55156462	215821466	27377907	7	1413											
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	38159473	38159473	+	Silent	SNP	A	A	G	rs201702862		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	38159473	A	G	38159473	2	3	27	1	0	0	0	0	0	0	0	1	4554	175	7	3		3	DLEC1	3	38159473	Silent	SNP	A	TCGA-A4-7286-01A-11D-2136-08		38159473	159862957	8	1414											
RGS12	6002	hgsc.bcm.edu;broad.mit.edu	37	4	3441324	3441324	+	Silent	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	3441324	T	C	3441324	2	2	27	1	0	0	0	0	0	0	0	1	13308	1538	54	3		3	RGS12	4	3441324	Silent	SNP	T	TCGA-A4-7286-01A-11D-2136-08		3441324	187712952	9	1415											
CCNG2	901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	78082688	78082688	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	78082688	C	T	78082688	4	4	27	1	0	0	0	0	0	1	0	0	2926	644	23	1	597	1	CCNG2	4	78082688	Nonsense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	74641364	78082688	113071588	10	1416											
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119952706	119952706	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	119952706	A	T	119952706	3	4	27	1	0	0	0	0	1	0	0	0	15469	362	13	5	2790	5	SYNPO2	4	119952706	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	41870018	119952706	71201570	11	1417											
MAML3	55534	hgsc.bcm.edu	37	4	140811126	140811126	+	Silent	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	140811126	C	T	140811126	2	4	27	1	0	0	0	0	0	0	0	1	9214	796	28	2		2	MAML3	4	140811126	Silent	SNP	C	TCGA-A4-7286-01A-11D-2136-08	20858420	140811126	50343150	12	1418											
FTMT	94033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121188229	121188229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	121188229	G	A	121188229	3	1	27	1	0	0	0	0	1	0	0	0	6092	1058	37	1	573	1	FTMT	5	121188229	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08		121188229	59727031	13	1419											
TRIM52	84851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180687083	180687083	+	Silent	SNP	G	G	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	180687083	G	T	180687083	2	4	27	1	0	0	0	0	0	0	0	1	16539	1335	47	4		4	TRIM52	5	180687083	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	59498854	180687083	228177	14	1420											
MEOX2	4223	hgsc.bcm.edu	37	7	15725794	15725794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	15725794	G	C	15725794	3	2	27	1	0	0	0	0	1	0	0	0	9481	1252	44	4	692	4	MEOX2	7	15725794	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08		15725794	143412869	15	1421			1	2		2	2	16	G		2.568066e-05
MEOX2	4223	hgsc.bcm.edu	37	7	15725809	15725809	+	Silent	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	15725809	G	A	15725809	2	1	27	1	0	0	0	0	0	0	0	1	9481	1252	44	2		2	MEOX2	7	15725809	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	15	15725809	143412854	16	1422			1	2		2	2	16	G		2.568066e-05
FKBP9	11328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	33014881	33014881	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	-	33014881	C	-	33014881	7	5	27	1	0	1	0	1	0	0	0	0	5922	507	18	0	465	0	FKBP9	7	33014881	Frame_Shift_Del	DEL	C	TCGA-A4-7286-01A-11D-2136-08	17289072	33014881	126123782	17	1423											
DDX56	54606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44607797	44607797	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	44607797	T	G	44607797	3	3	27	1	0	0	0	0	1	0	0	0	4376	1667	58	5	246	5	DDX56	7	44607797	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	11592916	44607797	114530866	18	1424											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	103234873	103234873	+	Silent	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	103234873	G	C	103234873	2	2	27	1	0	0	0	0	0	0	0	1	13233	1103	39	4		4	RELN	7	103234873	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	58627076	103234873	55903790	19	1425											
CFTR	1080	hgsc.bcm.edu	37	7	117174330	117174330	+	Missense_Mutation	SNP	A	A	G	rs200885306		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	117174330	A	G	117174330	3	3	27	1	0	0	0	0	1	0	0	0	3296	289	10	3	508	3	CFTR	7	117174330	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	13939457	117174330	41964333	20	1426											
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10388999	10388999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	10388999	C	G	10388999	3	3	27	1	0	0	0	0	1	0	0	0	12644	623	22	4	552	4	PRSS55	8	10388999	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08		10388999	135975023	21	1427											
TRHR	7201	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	110131438	110131438	+	Silent	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	110131438	G	A	110131438	2	1	27	1	0	0	0	0	0	0	0	1	16492	1103	39	1		1	TRHR	8	110131438	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	99742439	110131438	36232584	22	1428											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139790649	139790649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	139790649	C	T	139790649	3	4	27	1	0	0	0	0	1	0	0	0	3683	637	22	2	3379	2	COL22A1	8	139790649	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	29659211	139790649	6573373	23	1429											
UHRF2	115426	hgsc.bcm.edu	37	9	6493920	6493920	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	6493920	C	G	6493920	3	3	27	1	0	0	0	0	1	0	0	0	16982	478	17	4	1630	4	UHRF2	9	6493920	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08		6493920	134719511	24	1430											
ANKS6	203286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101533259	101533259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	101533259	A	T	101533259	3	4	27	1	0	0	0	0	1	0	0	0	692	72	3	5	748	5	ANKS6	9	101533259	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	95039339	101533259	39680172	25	1431											
ALG2	85365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101980774	101980774	+	Silent	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	101980774	G	A	101980774	2	1	27	1	0	0	0	0	0	0	0	1	519	1280	45	2		2	ALG2	9	101980774	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	447515	101980774	39232657	26	1432											
PCDH15	65217	broad.mit.edu;bcgsc.ca	37	10	55617003	55617003	+	Silent	SNP	C	C	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	55617003	C	A	55617003	2	1	27	1	0	0	0	0	0	0	0	1	11518	581	21	4		4	PCDH15	10	55617003	Silent	SNP	C	TCGA-A4-7286-01A-11D-2136-08		55617003	79917744	27	1433											
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129245700	129245700	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	129245700	T	A	129245700	3	1	27	1	0	0	0	0	1	0	0	0	4686	1667	58	5	5595	5	DOCK1	10	129245700	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	73628697	129245700	6289047	28	1434											
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	6281226	6281226	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	6281226	G	C	6281226	3	2	27	1	0	0	0	0	1	0	0	0	2883	1087	38	4	70	4	CCKBR	11	6281226	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08		6281226	128725290	29	1435											
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	22363111	22363112	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	-	22363112	GA	-	22363111	7	5	27	1	0	1	0	1	0	0	0	0	14434	1059	37	0	130	0	SLC17A6	11	22363111	Frame_Shift_Del	DEL	GA	TCGA-A4-7286-01A-11D-2136-08	16081885	22363111	112643405	30	1436											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46920187	46920187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	46920187	T	A	46920187	3	1	27	1	0	0	0	0	1	0	0	0	8966	1580	55	5	5127	5	LRP4	11	46920187	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	24557076	46920187	88086329	31	1437											
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	15784493	15784493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	15784493	C	A	15784493	3	1	27	1	0	0	0	0	1	0	0	0	5196	797	28	4	557	4	EPS8	12	15784493	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08		15784493	118067402	32	1438											
INHBC	3626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57828750	57828750	+	Silent	SNP	A	A	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	57828750	A	C	57828750	2	2	27	1	0	0	0	0	0	0	0	1	7750	175	7	5		5	INHBC	12	57828750	Silent	SNP	A	TCGA-A4-7286-01A-11D-2136-08	42044257	57828750	76023145	33	1439											
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105428135	105428135	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	105428135	A	C	105428135	3	2	27	1	0	0	0	0	1	0	0	0	495	126	5	5	604	5	ALDH1L2	12	105428135	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	47599385	105428135	28423760	34	1440											
MORN3	283385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	122107353	122107353	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	-	122107353	G	-	122107353	7	5	27	1	0	1	0	1	0	0	0	0	9716	991	35	0	705	0	MORN3	12	122107353	Frame_Shift_Del	DEL	G	TCGA-A4-7286-01A-11D-2136-08	16679218	122107353	11744542	35	1441											
RNF6	6049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	26788332	26788332	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	26788332	T	A	26788332	3	1	27	1	0	0	0	0	1	0	0	0	13511	1580	55	5	374	5	RNF6	13	26788332	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08		26788332	88381546	36	1442											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20857434	20857434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	20857434	C	T	20857434	3	4	27	1	0	0	0	0	1	0	0	0	15771	826	29	2	5551	2	TEP1	14	20857434	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08		20857434	86492106	37	1443											
SYNE2	23224	hgsc.bcm.edu	37	14	64520135	64520135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	64520135	A	G	64520135	3	3	27	1	0	0	0	0	1	0	0	0	15458	352	13	3	9690	3	SYNE2	14	64520135	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	43662701	64520135	42829405	38	1444											
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	25959389	25959389	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	25959389	C	G	25959389	5	3	27	1	0	0	0	0	0	0	1	0	1116	695	24	4	2771	4	ATP10A	15	25959389	Splice_Site	SNP	C	TCGA-A4-7286-01A-11D-2136-08		25959389	76572003	39	1445											
ALDH3A2	224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19575183	19575183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	19575183	T	A	19575183	3	1	27	1	0	0	0	0	1	0	0	0	498	1493	52	5	1391	5	ALDH3A2	17	19575183	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08		19575183	61620027	40	1446											
PROCA1	147011	hgsc.bcm.edu;bcgsc.ca	37	17	27038593	27038593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	27038593	C	T	27038593	3	4	27	1	0	0	0	0	1	0	0	0	12556	710	25	2	940	2	PROCA1	17	27038593	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	7463410	27038593	54156617	41	1447											
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	77079593	77079593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	77079593	C	G	77079593	3	3	27	1	0	0	0	0	1	0	0	0	5120	623	22	4	1206	4	ENGASE	17	77079593	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	50041000	77079593	4115617	42	1448											
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79094952	79094952	+	Silent	SNP	A	A	T	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	T	79094952	A	T	79094952	2	4	27	1	0	0	0	0	0	0	0	1	26	175	7	5		5	AATK	17	79094952	Silent	SNP	A	TCGA-A4-7286-01A-11D-2136-08	2015359	79094952	2100258	43	1449											
ZNF208	7757	hgsc.bcm.edu	37	19	22154841	22154841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	22154841	T	C	22154841	3	2	27	1	0	0	0	0	1	0	0	0	17778	1792	62	3	851	3	ZNF208	19	22154841	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08		22154841	36974142	44	1450											
FCGRT	2217	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	50017180	50017180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	50017180	T	C	50017180	3	2	27	1	0	0	0	0	1	0	0	0	5793	1551	54	3	121	3	FCGRT	19	50017180	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	27862339	50017180	9111803	45	1451											
PCSK2	5126	hgsc.bcm.edu	37	20	17462695	17462695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	17462695	A	G	17462695	3	3	27	1	0	0	0	0	1	0	0	0	11608	72	3	3	1943	3	PCSK2	20	17462695	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08		17462695	45562825	46	1452											
CSRP2BP	57325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	18142850	18142850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	18142850	C	G	18142850	3	3	27	1	0	0	0	0	1	0	0	0	3970	855	30	4	1087	4	CSRP2BP	20	18142850	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	680155	18142850	44882670	47	1453											
HM13	81502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30137040	30137040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	A	30137040	G	A	30137040	3	1	27	1	0	0	0	0	1	0	0	0	7224	1203	42	2	660	2	HM13	20	30137040	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08	11994190	30137040	32888480	48	1454											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40080522	40080522	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	G	40080522	C	G	40080522	3	3	27	1	0	0	0	0	1	0	0	0	3331	595	21	4	4744	4	CHD6	20	40080522	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	9943482	40080522	22944998	49	1455											
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49367023	49367023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	49367023	T	C	49367023	3	2	27	1	0	0	0	0	1	0	0	0	11453	1477	51	3	1127	3	PARD6B	20	49367023	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	9286501	49367023	13658497	50	1456											
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62648174	62648174	+	Silent	SNP	T	T	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	62648174	T	C	62648174	2	2	27	1	0	0	0	0	0	0	0	1	12584	1403	49	3		3	PRPF6	20	62648174	Silent	SNP	T	TCGA-A4-7286-01A-11D-2136-08	13281151	62648174	377346	51	1457											
EDA	1896	hgsc.bcm.edu	37	X	69243092	69243092	+	Splice_Site	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	69243092	G	C	69243092	5	2	27	1	0	0	0	0	0	0	1	0	4905	1275	44	4	673	4	EDA	23	69243092	Splice_Site	SNP	G	TCGA-A4-7286-01A-11D-2136-08		69243092	86027468	52	1458											
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102004858	102004858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	C	102004858	G	C	102004858	3	2	27	1	0	0	0	0	1	0	0	0	1420	1377	48	4	937	4	BHLHB9	23	102004858	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08	32761766	102004858	53265702	53	1459											
PLA2G2D	26279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20440719	20440719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	20440719	C	T	20440719	3	4	28	1	0	0	0	0	1	0	0	0	12004	478	17	2	115	2	PLA2G2D	1	20440719	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		20440719	228809902	1	1460											
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100327977	100327977	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	G	100327977	C	G	100327977	4	3	28	1	0	0	0	0	0	1	0	0	384	838	29	4	537	4	AGL	1	100327977	Nonsense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	79887258	100327977	148922644	2	1461											
RPRD2	23248	hgsc.bcm.edu	37	1	150415711	150415711	+	Silent	SNP	T	T	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	150415711	T	C	150415711	2	2	28	1	0	0	0	0	0	0	0	1	13630	1509	53	3		3	RPRD2	1	150415711	Silent	SNP	T	TCGA-A4-7287-01A-11D-2136-08	50087734	150415711	98834910	3	1462											
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156843561	156843561	+	Silent	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	156843561	C	T	156843561	2	4	28	1	0	0	0	0	0	0	0	1	10713	825	29	2		2	NTRK1	1	156843561	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08	6427850	156843561	92407060	4	1463											
GORAB	92344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	170501324	170501324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	170501324	C	T	170501324	3	4	28	1	0	0	0	0	1	0	0	0	6581	768	27	1	37	1	GORAB	1	170501324	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	13657763	170501324	78749297	5	1464											
RGS21	431704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	192321246	192321246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	192321246	C	A	192321246	3	1	28	1	0	0	0	0	1	0	0	0	13317	739	26	4	168	4	RGS21	1	192321246	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	21819922	192321246	56929375	6	1465											
CDC73	79577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	193099338	193099338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	193099338	G	A	193099338	3	1	28	1	0	0	0	0	1	0	0	0	3087	1058	37	1	282	1	CDC73	1	193099338	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	778092	193099338	56151283	7	1466											
SNRPE	6635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203832834	203832835	+	Missense_Mutation	DNP	GG	GG	AA	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	AA	203832835	GG	AA	203832834	3	1	28	1	0	0	0	0	1	0	0	0	14880	1116	39	1	135	1	SNRPE	1	203832834	Missense_Mutation	DNP	GG	TCGA-A4-7287-01A-11D-2136-08	10733496	203832834	45417787	8	1467											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	225599084	225599084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	225599084	A	T	225599084	3	4	28	1	0	0	0	0	1	0	0	0	8659	127	5	5	728	5	LBR	1	225599084	Missense_Mutation	SNP	A	TCGA-A4-7287-01A-11D-2136-08	21766250	225599084	23651537	9	1468											
CCDC85A	114800	broad.mit.edu	37	2	56420491	56420491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	56420491	G	A	56420491	3	1	28	1	0	0	0	0	1	0	0	0	2861	1117	39	1	1162	1	CCDC85A	2	56420491	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		56420491	186778882	10	1469											
TMEM150A	129303	ucsc.edu	37	2	85828227	85828227	+	Silent	SNP	G	G	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	85828227	G	T	85828227	2	4	28	1	0	0	0	0	0	0	0	1	16079	987	35	4		4	TMEM150A	2	85828227	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	29407736	85828227	157371146	11	1470											
DLEC1	9940	hgsc.bcm.edu	37	3	38149133	38149133	+	Missense_Mutation	SNP	G	G	A	rs141938666		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	38149133	G	A	38149133	3	1	28	1	0	0	0	0	1	0	0	0	4554	1261	44	2	3001	2	DLEC1	3	38149133	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		38149133	159873297	12	1471											
HYAL1	3373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50340364	50340364	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	50340364	G	C	50340364	3	2	28	1	0	0	0	0	1	0	0	0	7470	932	33	4	1295	4	HYAL1	3	50340364	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	12191231	50340364	147682066	13	1472											
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	167170764	167170764	+	Silent	SNP	G	G	A	rs140665807		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	167170764	G	A	167170764	2	1	28	1	0	0	0	0	0	0	0	1	14132	1103	39	1		1	SERPINI2	3	167170764	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	116830400	167170764	30851666	14	1473											
DCK	1633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71892401	71892401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	71892401	C	A	71892401	3	1	28	1	0	0	0	0	1	0	0	0	4292	827	29	4	707	4	DCK	4	71892401	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		71892401	119261875	15	1474											
PDE5A	8654	hgsc.bcm.edu	37	4	120486567	120486567	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	120486567	T	C	120486567	5	2	28	1	0	0	0	0	0	0	1	0	11651	1536	53	3	1793	3	PDE5A	4	120486567	Splice_Site	SNP	T	TCGA-A4-7287-01A-11D-2136-08	48594166	120486567	70667709	16	1475											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126371574	126371574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	126371574	G	A	126371574	3	1	28	1	0	0	0	0	1	0	0	0	5699	1000	35	2	9437	2	FAT4	4	126371574	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	5885007	126371574	64782702	17	1476											
PCDHA6	56142	broad.mit.edu;bcgsc.ca	37	5	140209735	140209735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	140209735	G	A	140209735	3	1	28	1	0	0	0	0	1	0	0	0	11535	1087	38	1	2061	1	PCDHA6	5	140209735	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		140209735	40705525	18	1477											
HIST1H4C	8364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26104205	26104205	+	Silent	SNP	C	C	G	rs139978722	byfrequency;alternate_allele	TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	G	26104205	C	G	26104205	2	3	28	1	0	0	0	0	0	0	0	1	7174	784	28	4		4	HIST1H4C	6	26104205	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08		26104205	145010862	19	1478											
CFB	629	bcgsc.ca	37	6	31919751	31919751	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	G	31919751	C	G	31919751	3	3	28	1	0	0	0	0	1	0	0	0	3280	827	29	4	2309	4	CFB	6	31919751	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	5815546	31919751	139195316	20	1479											
TFEB	7942	ucsc.edu	37	6	41658862	41658862	+	Silent	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	41658862	G	A	41658862	2	1	28	1	0	0	0	0	0	0	0	1	15813	1277	45	2		2	TFEB	6	41658862	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	9739111	41658862	129456205	21	1480											
CRISP3	10321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49696475	49696475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	49696475	C	T	49696475	3	4	28	1	0	0	0	0	1	0	0	0	3883	739	26	2	35	2	CRISP3	6	49696475	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	8037613	49696475	121418592	22	1481											
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70990561	70990561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	70990561	G	A	70990561	3	1	28	1	0	0	0	0	1	0	0	0	3709	1116	39	1	1952	1	COL9A1	6	70990561	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	21294086	70990561	100124506	23	1482											
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76660465	76660465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	76660465	G	C	76660465	3	2	28	1	0	0	0	0	1	0	0	0	7735	933	33	4	775	4	IMPG1	6	76660465	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	5669904	76660465	94454602	24	1483			1	3		4	3	172	N	G	5.642439e-08
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76660529	76660529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	76660529	G	A	76660529	3	1	28	1	0	0	0	0	1	0	0	0	7735	942	33	2	839	2	IMPG1	6	76660529	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	64	76660529	94454538	25	1484	22	2	1	3		4	3	172	N	G	5.642439e-08
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76660533	76660533	+	Silent	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	76660533	G	A	76660533	2	1	28	1	0	0	0	0	0	0	0	1	7735	933	33	2		2	IMPG1	6	76660533	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	4	76660533	94454534	26	1485	22	2	1	3		4	3	172	N	G	5.642439e-08
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76660636	76660636	+	Silent	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	76660636	G	A	76660636	2	1	28	1	0	0	0	0	0	0	0	1	7735	1280	45	2		2	IMPG1	6	76660636	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	103	76660636	94454431	27	1486			1	3		4	3	172	N	G	5.642439e-08
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	112454683	112454683	+	Silent	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	112454683	G	C	112454683	2	2	28	1	0	0	0	0	0	0	0	1	8615	1277	45	4		4	LAMA4	6	112454683	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	35794047	112454683	58660384	28	1487											
MSRA	4482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	9912062	9912062	+	Silent	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	9912062	C	T	9912062	2	4	28	1	0	0	0	0	0	0	0	1	9894	842	30	2		2	MSRA	8	9912062	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08		9912062	136451960	29	1488			2	4		2	2	42	C		8.078689e-05
MSRA	4482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	9912103	9912103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	9912103	C	T	9912103	3	4	28	1	0	0	0	0	1	0	0	0	9894	893	31	1	79	1	MSRA	8	9912103	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	41	9912103	136451919	30	1489			2	4		2	2	42	C		8.078689e-05
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	37730588	37730589	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	G	37730589	-	G	37730588	7	5	28	1	0	1	1	0	0	0	0	0	12906	304	11	0	2131	0	RAB11FIP1	8	37730588	Frame_Shift_Ins	INS	-	TCGA-A4-7287-01A-11D-2136-08	27818485	37730588	108633434	31	1490											
ZNF189	7743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104170234	104170234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	104170234	G	C	104170234	3	2	28	1	0	0	0	0	1	0	0	0	17766	1291	45	4	194	4	ZNF189	9	104170234	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		104170234	37043197	32	1491											
KIAA0368	23392	hgsc.bcm.edu	37	9	114148697	114148697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	114148697	T	C	114148697	3	2	28	1	0	0	0	0	1	0	0	0	8178	1763	61	3	2108	3	KIAA0368	9	114148697	Missense_Mutation	SNP	T	TCGA-A4-7287-01A-11D-2136-08	9978463	114148697	27064734	33	1492											
TSC1	7248	broad.mit.edu;bcgsc.ca	37	9	135796822	135796826	+	Frame_Shift_Del	DEL	GGCTA	GGCTA	-	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	GGCTA	GGCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	-	135796826	GGCTA	-	135796822	7	5	28	1	0	1	0	1	0	0	0	0	16617	1362	47	0	2893	0	TSC1	9	135796822	Frame_Shift_Del	DEL	GGCTA	TCGA-A4-7287-01A-11D-2136-08	21648125	135796822	5416609	34	1493											
ITGB1	3688	hgsc.bcm.edu	37	10	33212557	33212557	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	33212557	G	C	33212557	3	2	28	1	0	0	0	0	1	0	0	0	7897	1386	48	4	1776	4	ITGB1	10	33212557	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		33212557	102322190	35	1494											
EXOC6	54536	hgsc.bcm.edu	37	10	94700514	94700514	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	94700514	G	C	94700514	3	2	28	1	0	0	0	0	1	0	0	0	5310	1290	45	4	1383	4	EXOC6	10	94700514	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	61487957	94700514	40834233	36	1495											
OR10Q1	219960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57996225	57996225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	57996225	C	T	57996225	3	4	28	1	0	0	0	0	1	0	0	0	10923	826	29	2	840	2	OR10Q1	11	57996225	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		57996225	77010291	37	1496											
PDGFD	80310	hgsc.bcm.edu	37	11	103797648	103797648	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	103797648	A	T	103797648	3	4	28	1	0	0	0	0	1	0	0	0	11667	391	14	5	141	5	PDGFD	11	103797648	Missense_Mutation	SNP	A	TCGA-A4-7287-01A-11D-2136-08	45801423	103797648	31208868	38	1497											
PFDN5	5204	hgsc.bcm.edu	37	12	53689653	53689653	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	G	53689653	C	G	53689653	3	3	28	1	0	0	0	0	1	0	0	0	11765	827	29	4	109	4	PFDN5	12	53689653	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		53689653	80162242	39	1498											
ZNF385A	25946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54764720	54764720	+	Silent	SNP	T	T	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	54764720	T	C	54764720	2	2	28	1	0	0	0	0	0	0	0	1	17888	1722	60	3		3	ZNF385A	12	54764720	Silent	SNP	T	TCGA-A4-7287-01A-11D-2136-08	1075067	54764720	79087175	40	1499											
PHLDA1	22822	hgsc.bcm.edu	37	12	76424937	76424937	+	Silent	SNP	T	T	C	rs76176478	bycluster	TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	76424937	T	C	76424937	2	2	28	1	0	0	0	0	0	0	0	1	11855	1722	60	3		3	PHLDA1	12	76424937	Silent	SNP	T	TCGA-A4-7287-01A-11D-2136-08	21660217	76424937	57426958	41	1500											
C12orf74	338809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	93100691	93100691	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	G	93100691	C	G	93100691	3	3	28	1	0	0	0	0	1	0	0	0	1716	913	32	4	286	4	C12orf74	12	93100691	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	16675754	93100691	40751204	42	1501											
HS3ST6	64711	hgsc.bcm.edu	37	16	1962102	1962102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	1962102	T	C	1962102	3	2	28	1	0	0	0	0	1	0	0	0	7376	1667	58	3	514	3	HS3ST6	16	1962102	Missense_Mutation	SNP	T	TCGA-A4-7287-01A-11D-2136-08		1962102	88392651	43	1502											
SUZ12	23512	hgsc.bcm.edu	37	17	30323881	30323881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	G	30323881	A	G	30323881	3	3	28	1	0	0	0	0	1	0	0	0	15428	217	8	3	1917	3	SUZ12	17	30323881	Missense_Mutation	SNP	A	TCGA-A4-7287-01A-11D-2136-08		30323881	50871329	44	1503											
COASY	80347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40717244	40717244	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	40717244	G	T	40717244	5	4	28	1	0	0	0	0	0	0	1	0	3654	956	33	4	1415	4	COASY	17	40717244	Splice_Site	SNP	G	TCGA-A4-7287-01A-11D-2136-08	10393363	40717244	40477966	45	1504											
AOC2	314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40997487	40997487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	40997487	G	C	40997487	3	2	28	1	0	0	0	0	1	0	0	0	727	1029	36	4	846	4	AOC2	17	40997487	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	280243	40997487	40197723	46	1505											
MAPT	4137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	44101444	44101444	+	Silent	SNP	C	C	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	G	44101444	C	G	44101444	2	3	28	1	0	0	0	0	0	0	0	1	9304	900	32	4		4	MAPT	17	44101444	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08	3103957	44101444	37093766	47	1506											
TYMS	7298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	662242	662242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	G	662242	A	G	662242	3	3	28	1	0	0	0	0	1	0	0	0	16824	180	7	3	386	3	TYMS	18	662242	Missense_Mutation	SNP	A	TCGA-A4-7287-01A-11D-2136-08		662242	77415006	48	1507											
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2616466	2616466	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	2616466	G	C	2616466	3	2	28	1	0	0	0	0	1	0	0	0	10249	1290	45	4	1884	4	NDC80	18	2616466	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	1954224	2616466	75460782	49	1508											
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2616517	2616517	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	2616517	G	C	2616517	3	2	28	1	0	0	0	0	1	0	0	0	10249	943	33	4	1935	4	NDC80	18	2616517	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	51	2616517	75460731	50	1509											
SEMA6B	10501	hgsc.bcm.edu	37	19	4544313	4544313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	4544313	T	C	4544313	3	2	28	1	0	0	0	0	1	0	0	0	14053	1551	54	3	703	3	SEMA6B	19	4544313	Missense_Mutation	SNP	T	TCGA-A4-7287-01A-11D-2136-08		4544313	54584670	51	1510											
FBXW9	84261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12800616	12800616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	12800616	G	A	12800616	3	1	28	1	0	0	0	0	1	0	0	0	5778	1319	46	2	287	2	FBXW9	19	12800616	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	8256303	12800616	46328367	52	1511											
KLHL26	55295	broad.mit.edu	37	19	18778682	18778682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	18778682	G	A	18778682	3	1	28	1	0	0	0	0	1	0	0	0	8388	1203	42	2	485	2	KLHL26	19	18778682	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	5978066	18778682	40350301	53	1512											
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	43967294	43967300	+	Frame_Shift_Del	DEL	GTTGCCG	GTTGCCG	-	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	GTTGCCG	GTTGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	-	43967300	GTTGCCG	-	43967294	7	5	28	1	0	1	0	1	0	0	0	0	9118	1136	40	0	520	0	LYPD3	19	43967294	Frame_Shift_Del	DEL	GTTGCCG	TCGA-A4-7287-01A-11D-2136-08	25188612	43967294	15161689	54	1513											
SIRPG	55423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1615980	1615980	+	Silent	SNP	C	C	A	rs147655438	alternate_allele	TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	1615980	C	A	1615980	2	1	28	1	0	0	0	0	0	0	0	1	14349	639	23	4		4	SIRPG	20	1615980	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08		1615980	61409540	55	1514											
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	62642850	62642850	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	62642850	G	C	62642850	3	2	28	1	0	0	0	0	1	0	0	0	12584	1183	41	4	1560	4	PRPF6	20	62642850	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	61026870	62642850	382670	56	1515											
FTCD	10841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47571511	47571511	+	Silent	SNP	G	G	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	47571511	G	T	47571511	2	4	28	1	0	0	0	0	0	0	0	1	6088	1048	37	4		4	FTCD	21	47571511	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08		47571511	558384	57	1516											
DGCR2	9993	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19028613	19028613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	19028613	C	T	19028613	3	4	28	1	0	0	0	0	1	0	0	0	4463	893	31	1	306	1	DGCR2	22	19028613	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		19028613	32275953	58	1517											
CXorf21	80231	bcgsc.ca	37	X	30578342	30578342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	30578342	G	T	30578342	3	4	28	1	0	0	0	0	1	0	0	0	4103	1174	41	4	778	4	CXorf21	23	30578342	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		30578342	124692218	59	1518											
MSN	4478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	64936758	64936758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	C	64936758	G	C	64936758	3	2	28	1	0	0	0	0	1	0	0	0	9892	1290	45	4	97	4	MSN	23	64936758	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	34358416	64936758	90333802	60	1519											
OGT	8473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70782731	70782731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	T	70782731	C	T	70782731	3	4	28	1	0	0	0	0	1	0	0	0	10854	768	27	1	2074	1	OGT	23	70782731	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	5845973	70782731	84487829	61	1520											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123197834	123197834	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	A	123197834	C	A	123197834	4	1	28	1	0	0	0	0	0	1	0	0	15255	838	29	4	2028	4	STAG2	23	123197834	Nonsense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	52415103	123197834	32072726	62	1521											
DDI2	84301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15957021	15957021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	15957021	C	T	15957021	3	4	29	1	0	0	0	0	1	0	0	0	4331	594	21	2	480	2	DDI2	1	15957021	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08		15957021	233293600	1	1522											
GALE	2582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24124297	24124297	+	Missense_Mutation	SNP	G	G	T	rs141583863	alternate_allele	TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	24124297	G	T	24124297	3	4	29	1	0	0	0	0	1	0	0	0	6209	1232	43	4	658	4	GALE	1	24124297	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	8167276	24124297	225126324	2	1523											
NUDC	10726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27250638	27250638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	27250638	A	G	27250638	3	3	29	1	0	0	0	0	1	0	0	0	10728	246	9	3	146	3	NUDC	1	27250638	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	3126341	27250638	221999983	3	1524											
DOCK7	85440	hgsc.bcm.edu;bcgsc.ca	37	1	63119666	63119666	+	Silent	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	63119666	T	C	63119666	2	2	29	1	0	0	0	0	0	0	0	1	4694	1625	57	3		3	DOCK7	1	63119666	Silent	SNP	T	TCGA-A4-7288-01A-11D-2136-08	35869028	63119666	186130955	4	1525											
CTH	1491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70877247	70877247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	70877247	G	C	70877247	3	2	29	1	0	0	0	0	1	0	0	0	4011	1232	43	4	151	4	CTH	1	70877247	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	7757581	70877247	178373374	5	1526											
DNTTIP2	30836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94337674	94337674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	94337674	C	A	94337674	3	1	29	1	0	0	0	0	1	0	0	0	4684	913	32	4	261	4	DNTTIP2	1	94337674	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	23460427	94337674	154912947	6	1527											
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150936790	150936790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	150936790	G	A	150936790	3	1	29	1	0	0	0	0	1	0	0	0	14151	1175	41	2	3908	2	SETDB1	1	150936790	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	56599116	150936790	98313831	7	1528											
SLC27A3	11000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153752431	153752431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	153752431	A	T	153752431	3	4	29	1	0	0	0	0	1	0	0	0	14540	159	6	5	2184	5	SLC27A3	1	153752431	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	2815641	153752431	95498190	8	1529											
DDX59	83479	hgsc.bcm.edu;broad.mit.edu	37	1	200635600	200635600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	200635600	G	C	200635600	3	2	29	1	0	0	0	0	1	0	0	0	4378	1232	43	4	1618	4	DDX59	1	200635600	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	46883169	200635600	48615021	9	1530											
BTG2	7832	broad.mit.edu	37	1	203274779	203274779	+	Silent	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	203274779	C	T	203274779	2	4	29	1	0	0	0	0	0	0	0	1	1556	639	23	1		1	BTG2	1	203274779	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08	2639179	203274779	45975842	10	1531											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	109383218	109383218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	109383218	A	C	109383218	3	2	29	1	0	0	0	0	1	0	0	0	13041	333	12	5	6301	5	RANBP2	2	109383218	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08		109383218	133816155	11	1532											
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152319615	152319615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	152319615	C	A	152319615	3	1	29	1	0	0	0	0	1	0	0	0	13372	913	32	4	3695	4	RIF1	2	152319615	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	42936397	152319615	90879758	12	1533											
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	185802128	185802128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	185802128	G	C	185802128	3	2	29	1	0	0	0	0	1	0	0	0	18182	1290	45	4	2019	4	ZNF804A	2	185802128	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	33482513	185802128	57397245	13	1534											
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198001337	198001337	+	Silent	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	198001337	C	A	198001337	2	1	29	1	0	0	0	0	0	0	0	1	672	610	22	4		4	ANKRD44	2	198001337	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08	12199209	198001337	45198036	14	1535											
RBM44	375316	hgsc.bcm.edu	37	2	238726834	238726834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	238726834	A	G	238726834	3	3	29	1	0	0	0	0	1	0	0	0	13151	410	15	3	1281	3	RBM44	2	238726834	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	40725497	238726834	4472539	15	1536											
DCP1A	55802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	53376261	53376261	+	Silent	SNP	G	G	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	53376261	G	T	53376261	2	4	29	1	0	0	0	0	0	0	0	1	4300	1066	37	4		4	DCP1A	3	53376261	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08		53376261	144646169	16	1537											
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108703606	108703606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	108703606	C	T	108703606	3	4	29	1	0	0	0	0	1	0	0	0	9708	478	17	2	697	2	MORC1	3	108703606	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	55327345	108703606	89318824	17	1538											
PLOD2	5352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	145803003	145803003	+	Silent	SNP	A	A	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	145803003	A	T	145803003	2	4	29	1	0	0	0	0	0	0	0	1	12109	117	5	5		5	PLOD2	3	145803003	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	37099397	145803003	52219427	18	1539											
TBL1XR1	79718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	176767825	176767825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	176767825	T	C	176767825	3	2	29	1	0	0	0	0	1	0	0	0	15652	1435	50	3	922	3	TBL1XR1	3	176767825	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08	30964822	176767825	21254605	19	1540											
MAP3K13	9175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185191375	185191375	+	Silent	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	185191375	G	A	185191375	2	1	29	1	0	0	0	0	0	0	0	1	9254	1161	41	2		2	MAP3K13	3	185191375	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08	8423550	185191375	12831055	20	1541											
AHSG	197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186335047	186335047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	186335047	G	A	186335047	3	1	29	1	0	0	0	0	1	0	0	0	420	1261	44	2	495	2	AHSG	3	186335047	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	1143672	186335047	11687383	21	1542											
COMMD8	54951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	47462160	47462160	+	Splice_Site	DEL	C	C	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	-	47462160	C	-	47462160	8	5	29	1	0	1	0	1	0	0	1	0	3724	521	18	0	344	0	COMMD8	4	47462160	Splice_Site	DEL	C	TCGA-A4-7288-01A-11D-2136-08		47462160	143692116	22	1543	23	3									
COMMD8	54951	hgsc.bcm.edu	37	4	47462161	47462163	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	-	47462163	CTC	-	47462161	7	5	29	1	0	1	0	1	0	0	0	0	3724	695	24	0	345	0	COMMD8	4	47462161	In_Frame_Del	DEL	CTC	TCGA-A4-7288-01A-11D-2136-08	1	47462161	143692115	23	1544	23	3									
COMMD8	54951	hgsc.bcm.edu;bcgsc.ca	37	4	47462163	47462163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	47462163	C	T	47462163	3	4	29	1	0	0	0	0	1	0	0	0	3724	922	32	2	347	2	COMMD8	4	47462163	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	2	47462163	143692113	24	1545	23	3									
CEP135	9662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	56847415	56847423	+	In_Frame_Del	DEL	TAAGAAAGG	TAAGAAAGG	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	TAAGAAAGG	TAAGAAAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	-	56847423	TAAGAAAGG	-	56847415	7	5	29	1	0	1	0	1	0	0	0	0	3249	1522	53	0	1695	0	CEP135	4	56847415	In_Frame_Del	DEL	TAAGAAAGG	TCGA-A4-7288-01A-11D-2136-08	9385252	56847415	134306861	25	1546											
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57204741	57204741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	57204741	A	G	57204741	3	3	29	1	0	0	0	0	1	0	0	0	22	333	12	3	176	3	AASDH	4	57204741	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	357326	57204741	133949535	26	1547											
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	106156045	106156045	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	106156045	T	A	106156045	3	1	29	1	0	0	0	0	1	0	0	0	15782	1609	56	5	948	5	TET2	4	106156045	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08	48951304	106156045	84998231	27	1548											
LARP1B	55132	hgsc.bcm.edu	37	4	128999004	128999004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	128999004	A	G	128999004	3	3	29	1	0	0	0	0	1	0	0	0	8636	72	3	3	110	3	LARP1B	4	128999004	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	22842959	128999004	62155272	28	1549											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1064225	1064225	+	Silent	SNP	C	C	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	1064225	C	G	1064225	2	3	29	1	0	0	0	0	0	0	0	1	14401	697	25	4		4	SLC12A7	5	1064225	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08		1064225	179851035	29	1550											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72192301	72192301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	72192301	A	G	72192301	3	3	29	1	0	0	0	0	1	0	0	0	16347	439	16	3	2234	3	TNPO1	5	72192301	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	71128076	72192301	108722959	30	1551											
TCERG1	10915	hgsc.bcm.edu	37	5	145838583	145838583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	145838583	A	G	145838583	3	3	29	1	0	0	0	0	1	0	0	0	15697	188	7	3	589	3	TCERG1	5	145838583	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	73646282	145838583	35076677	31	1552											
SCGN	10590	hgsc.bcm.edu;broad.mit.edu	37	6	25701512	25701512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	25701512	A	T	25701512	3	4	29	1	0	0	0	0	1	0	0	0	13916	11	1	5	822	5	SCGN	6	25701512	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08		25701512	145413555	32	1553											
TRAF3IP2	10758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111912700	111912700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	111912700	G	T	111912700	3	4	29	1	0	0	0	0	1	0	0	0	16453	1145	40	4	1139	4	TRAF3IP2	6	111912700	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	86211188	111912700	59202367	33	1554											
POM121	9883	hgsc.bcm.edu;broad.mit.edu	37	7	72416770	72416770	+	Silent	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	72416770	G	A	72416770	2	1	29	1	0	0	0	0	0	0	0	1	12246	1020	36	2		2	POM121	7	72416770	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08		72416770	86721893	34	1555											
PCLO	27445	bcgsc.ca	37	7	82784463	82784463	+	Silent	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	82784463	C	T	82784463	2	4	29	1	0	0	0	0	0	0	0	1	11590	796	28	2		2	PCLO	7	82784463	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08	10367693	82784463	76354200	35	1556											
PDIA4	9601	broad.mit.edu	37	7	148702375	148702375	+	Silent	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	148702375	C	T	148702375	2	4	29	1	0	0	0	0	0	0	0	1	11677	610	22	2		2	PDIA4	7	148702375	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08	65917912	148702375	10436288	36	1557											
ZDHHC2	51201	broad.mit.edu	37	8	17043867	17043867	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	-	17043867	T	-	17043867	7	5	29	1	0	1	0	1	0	0	0	0	17622	1609	56	0	195	0	ZDHHC2	8	17043867	Frame_Shift_Del	DEL	T	TCGA-A4-7288-01A-11D-2136-08		17043867	129320155	37	1558											
LPL	4023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	19816813	19816813	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	19816813	G	C	19816813	3	2	29	1	0	0	0	0	1	0	0	0	8928	1029	36	4	1087	4	LPL	8	19816813	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	2772946	19816813	126547209	38	1559											
PLEKHA2	59339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	38810172	38810172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	38810172	C	A	38810172	3	1	29	1	0	0	0	0	1	0	0	0	12063	884	31	4	678	4	PLEKHA2	8	38810172	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	18993359	38810172	107553850	39	1560											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	55540098	55540099	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	55540099	-	T	55540098	7	5	29	1	0	1	1	0	0	0	0	0	13545	1029	36	0	3666	0	RP1	8	55540098	Frame_Shift_Ins	INS	-	TCGA-A4-7288-01A-11D-2136-08	16729926	55540098	90823924	40	1561											
NBN	4683	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	90960111	90960111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	90960111	C	T	90960111	3	4	29	1	0	0	0	0	1	0	0	0	10198	835	29	2	429	2	NBN	8	90960111	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	35420013	90960111	55403911	41	1562											
AQP7	364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33385805	33385805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	33385805	G	T	33385805	3	4	29	1	0	0	0	0	1	0	0	0	831	1252	44	4	451	4	AQP7	9	33385805	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08		33385805	107827626	42	1563											
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	50530974	50530974	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	-	50530974	G	-	50530974	7	5	29	1	0	1	0	1	0	0	0	0	1616	1306	46	0	386	0	C10orf71	10	50530974	Frame_Shift_Del	DEL	G	TCGA-A4-7288-01A-11D-2136-08		50530974	85003773	43	1564											
SIGIRR	59307	broad.mit.edu;bcgsc.ca	37	11	406878	406878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	406878	G	T	406878	3	4	29	1	0	0	0	0	1	0	0	0	14317	991	35	4	400	4	SIGIRR	11	406878	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08		406878	134599638	44	1565											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1075662	1075662	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	1075662	C	G	1075662	3	3	29	1	0	0	0	0	1	0	0	0	9982	644	23	4	94	4	MUC2	11	1075662	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	668784	1075662	133930854	45	1566											
MUC5B	727897	hgsc.bcm.edu	37	11	1268402	1268402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	1268402	G	A	1268402	3	1	29	1	0	0	0	0	1	0	0	0	9986	971	34	2	10423	2	MUC5B	11	1268402	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	192740	1268402	133738114	46	1567											
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26725402	26725402	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	26725402	A	G	26725402	2	3	29	1	0	0	0	0	0	0	0	1	14677	214	8	3		3	SLC5A12	11	26725402	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	25457000	26725402	108281114	47	1568											
TCP11L1	55346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33083137	33083137	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	33083137	G	C	33083137	3	2	29	1	0	0	0	0	1	0	0	0	15726	1020	36	4	859	4	TCP11L1	11	33083137	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	6357735	33083137	101923379	48	1569											
NDUFS3	4722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47605943	47605943	+	Silent	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	47605943	G	A	47605943	2	1	29	1	0	0	0	0	0	0	0	1	10300	1277	45	2		2	NDUFS3	11	47605943	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08	14522806	47605943	87400573	49	1570											
ATL3	25923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	63403801	63403802	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	63403802	-	A	63403801	7	5	29	1	0	1	1	0	0	0	0	0	1108	710	25	0	789	0	ATL3	11	63403801	Frame_Shift_Ins	INS	-	TCGA-A4-7288-01A-11D-2136-08	15797858	63403801	71602715	50	1571											
CCDC67	159989	hgsc.bcm.edu	37	11	93122277	93122277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	93122277	A	G	93122277	3	3	29	1	0	0	0	0	1	0	0	0	2841	15	1	3	1057	3	CCDC67	11	93122277	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	29718476	93122277	41884239	51	1572											
CNTN5	53942	hgsc.bcm.edu	37	11	99690467	99690467	+	Missense_Mutation	SNP	A	A	C	rs202073412	alternate_allele	TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	99690467	A	C	99690467	3	2	29	1	0	0	0	0	1	0	0	0	3646	449	16	5	254	5	CNTN5	11	99690467	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	6568190	99690467	35316049	52	1573											
ATP5L	10632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118272388	118272388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	118272388	A	G	118272388	3	3	29	1	0	0	0	0	1	0	0	0	1160	130	5	3	10	3	ATP5L	11	118272388	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	18581921	118272388	16734128	53	1574											
TMEM45B	120224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	129724698	129724698	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	129724698	A	G	129724698	2	3	29	1	0	0	0	0	0	0	0	1	16182	175	7	3		3	TMEM45B	11	129724698	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	11452310	129724698	5281818	54	1575											
IFFO1	25900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6649694	6649694	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	6649694	A	G	6649694	2	3	29	1	0	0	0	0	0	0	0	1	7517	175	7	3		3	IFFO1	12	6649694	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08		6649694	127202201	55	1576											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46285793	46285793	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	46285793	G	A	46285793	5	1	29	1	0	0	0	0	0	0	1	0	915	1014	35	2	5131	2	ARID2	12	46285793	Splice_Site	SNP	G	TCGA-A4-7288-01A-11D-2136-08	39636099	46285793	87566102	56	1577											
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53685605	53685605	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	53685605	A	G	53685605	2	3	29	1	0	0	0	0	0	0	0	1	5255	175	7	3		3	ESPL1	12	53685605	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	7399812	53685605	80166290	57	1578											
LHX5	64211	hgsc.bcm.edu	37	12	113909129	113909129	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	113909129	A	G	113909129	5	3	29	1	0	0	0	0	0	0	1	0	8781	405	14	3	1053	3	LHX5	12	113909129	Splice_Site	SNP	A	TCGA-A4-7288-01A-11D-2136-08	60223524	113909129	19942766	58	1579											
ALG5	29880	broad.mit.edu	37	13	37539814	37539814	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	37539814	C	T	37539814	4	4	29	1	0	0	0	0	0	1	0	0	521	595	21	2	315	2	ALG5	13	37539814	Nonsense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08		37539814	77630064	59	1580											
HNRNPC	3183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21679712	21679713	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	-	21679713	AT	-	21679712	7	5	29	1	0	1	0	1	0	0	0	0	7269	214	8	0	238	0	HNRNPC	14	21679712	Frame_Shift_Del	DEL	AT	TCGA-A4-7288-01A-11D-2136-08		21679712	85669828	60	1581											
RAB2B	84932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21931921	21931921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	21931921	A	G	21931921	3	3	29	1	0	0	0	0	1	0	0	0	12931	420	15	3	294	3	RAB2B	14	21931921	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	252209	21931921	85417619	61	1582											
PCK2	5106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24568928	24568928	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	24568928	A	C	24568928	3	2	29	1	0	0	0	0	1	0	0	0	11589	86	3	5	1036	5	PCK2	14	24568928	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	2637007	24568928	82780612	62	1583											
C14orf183	196913	hgsc.bcm.edu	37	14	50550535	50550535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	50550535	C	G	50550535	3	3	29	1	0	0	0	0	1	0	0	0	1768	595	21	4	168	4	C14orf183	14	50550535	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	25981607	50550535	56799005	63	1584											
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	52494036	52494036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	52494036	C	T	52494036	3	4	29	1	0	0	0	0	1	0	0	0	10422	835	29	2	1614	2	NID2	14	52494036	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	1943501	52494036	54855504	64	1585											
PPM1A	5494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	60750192	60750192	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	60750192	A	T	60750192	3	4	29	1	0	0	0	0	1	0	0	0	12345	272	10	5	996	5	PPM1A	14	60750192	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	8256156	60750192	46599348	65	1586											
EML5	161436	hgsc.bcm.edu	37	14	89178771	89178771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	89178771	T	C	89178771	3	2	29	1	0	0	0	0	1	0	0	0	5102	1667	58	3	4568	3	EML5	14	89178771	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08	28428579	89178771	18170769	66	1587											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43299483	43299483	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	43299483	C	A	43299483	5	1	29	1	0	0	0	0	0	0	1	0	16913	811	28	4	2112	4	UBR1	15	43299483	Splice_Site	SNP	C	TCGA-A4-7288-01A-11D-2136-08		43299483	59231909	67	1588											
PARP6	56965	broad.mit.edu;bcgsc.ca	37	15	72556908	72556908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	72556908	A	G	72556908	3	3	29	1	0	0	0	0	1	0	0	0	11471	72	3	3	1577	3	PARP6	15	72556908	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	29257425	72556908	29974484	68	1589											
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90634783	90634783	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	90634783	A	G	90634783	5	3	29	1	0	0	0	0	0	0	1	0	7502	405	14	3	1189	3	IDH2	15	90634783	Splice_Site	SNP	A	TCGA-A4-7288-01A-11D-2136-08	18077875	90634783	11896609	69	1590											
RAB40C	57799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	677608	677608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	677608	T	C	677608	3	2	29	1	0	0	0	0	1	0	0	0	12955	1580	55	3	854	3	RAB40C	16	677608	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08		677608	89677145	70	1591											
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	22926750	22926750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	22926750	G	A	22926750	3	1	29	1	0	0	0	0	1	0	0	0	7371	1058	37	1	977	1	HS3ST2	16	22926750	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	22249142	22926750	67428003	71	1592											
PRSS8	5652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31144179	31144179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	31144179	A	G	31144179	3	3	29	1	0	0	0	0	1	0	0	0	12645	333	12	3	681	3	PRSS8	16	31144179	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	8217429	31144179	59210574	72	1593											
ABCC11	85320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48249161	48249161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	48249161	A	G	48249161	3	3	29	1	0	0	0	0	1	0	0	0	51	101	4	3	3194	3	ABCC11	16	48249161	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	17104982	48249161	42105592	73	1594											
INPP5K	51763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1400005	1400005	+	Silent	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	1400005	G	C	1400005	2	2	29	1	0	0	0	0	0	0	0	1	7767	987	35	4		4	INPP5K	17	1400005	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08		1400005	79795205	74	1595											
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40048661	40048661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	40048661	C	A	40048661	3	1	29	1	0	0	0	0	1	0	0	0	143	912	32	4	1720	4	ACLY	17	40048661	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	38648656	40048661	41146549	75	1596											
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42158172	42158172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	42158172	C	A	42158172	3	1	29	1	0	0	0	0	1	0	0	0	7017	826	29	4	710	4	HDAC5	17	42158172	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	2109511	42158172	39037038	76	1597											
AFG3L2	10939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12358734	12358734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	12358734	T	C	12358734	3	2	29	1	0	0	0	0	1	0	0	0	360	1464	51	3	1472	3	AFG3L2	18	12358734	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08		12358734	65718514	77	1598											
APC2	10297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1468067	1468067	+	Silent	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	1468067	C	T	1468067	2	4	29	1	0	0	0	0	0	0	0	1	764	639	23	1		1	APC2	19	1468067	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08		1468067	57660916	78	1599											
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13249116	13249116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	13249116	A	G	13249116	3	3	29	1	0	0	0	0	1	0	0	0	10142	188	7	3	1498	3	NACC1	19	13249116	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	11781049	13249116	45879867	79	1600											
ADCK4	79934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41220537	41220537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	41220537	T	C	41220537	3	2	29	1	0	0	0	0	1	0	0	0	290	1493	52	3	1689	3	ADCK4	19	41220537	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08	27971421	41220537	17908446	80	1601											
PRR12	57479	hgsc.bcm.edu	37	19	50119185	50119185	+	Missense_Mutation	SNP	C	C	G	rs200319638		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	50119185	C	G	50119185	3	3	29	1	0	0	0	0	1	0	0	0	12594	759	27	4	5240	4	PRR12	19	50119185	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	8898648	50119185	9009798	81	1602											
ZNF347	84671	hgsc.bcm.edu	37	19	53643807	53643807	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	53643807	A	G	53643807	2	3	29	1	0	0	0	0	0	0	0	1	17873	242	9	3		3	ZNF347	19	53643807	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	3524622	53643807	5485176	82	1603	24	3	1	5		5	3	310	N	G_C_A	4.019707e-07
ZNF347	84671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	53643811	53643811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	53643811	C	G	53643811	3	3	29	1	0	0	0	0	1	0	0	0	17873	855	30	4	253	4	ZNF347	19	53643811	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	4	53643811	5485172	83	1604	24	3	1	5		5	3	310	N	G_C_A	4.019707e-07
ZNF347	84671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	53643814	53643814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	53643814	C	T	53643814	3	4	29	1	0	0	0	0	1	0	0	0	17873	652	23	1	256	1	ZNF347	19	53643814	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	3	53643814	5485169	84	1605	24	3	1	5		5	3	310	N	G_C_A	4.019707e-07
ZNF347	84671	hgsc.bcm.edu	37	19	53644104	53644104	+	Silent	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	53644104	G	C	53644104	2	2	29	1	0	0	0	0	0	0	0	1	17873	1306	46	4		4	ZNF347	19	53644104	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08	290	53644104	5484879	85	1606			1	5		5	3	310	N	G_C_A	4.019707e-07
ZNF347	84671	hgsc.bcm.edu	37	19	53644116	53644116	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	53644116	A	G	53644116	2	3	29	1	0	0	0	0	0	0	0	1	17873	389	14	3		3	ZNF347	19	53644116	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	12	53644116	5484867	86	1607			1	5		5	3	310	N	G_C_A	4.019707e-07
RBBP9	10741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	18471080	18471080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	18471080	G	A	18471080	3	1	29	1	0	0	0	0	1	0	0	0	13119	1087	38	1	275	1	RBBP9	20	18471080	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08		18471080	44554440	87	1608											
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25201971	25201971	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	A	25201971	T	A	25201971	5	1	29	1	0	0	0	0	0	0	1	0	5145	1652	57	5	1092	5	ENTPD6	20	25201971	Splice_Site	SNP	T	TCGA-A4-7288-01A-11D-2136-08	6730891	25201971	37823549	88	1609											
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42208647	42208647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	42208647	A	G	42208647	3	3	29	1	0	0	0	0	1	0	0	0	14222	352	13	3	1107	3	SGK2	20	42208647	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	17006676	42208647	20816873	89	1610											
CDH22	64405	broad.mit.edu	37	20	44806642	44806642	+	Missense_Mutation	SNP	C	C	T	rs144477780		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	T	44806642	C	T	44806642	3	4	29	1	0	0	0	0	1	0	0	0	3109	768	27	1	636	1	CDH22	20	44806642	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	2597995	44806642	18218878	90	1611											
LIMK2	3985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31655910	31655910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	C	31655910	T	C	31655910	3	2	29	1	0	0	0	0	1	0	0	0	8809	1464	51	3	473	3	LIMK2	22	31655910	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08		31655910	19648656	91	1612											
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38482355	38482355	+	Missense_Mutation	SNP	C	C	G	rs113792005		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	38482355	C	G	38482355	3	3	29	1	0	0	0	0	1	0	0	0	1303	768	27	4	240	4	BAIAP2L2	22	38482355	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	6826445	38482355	12822211	92	1613											
PLA2G6	8398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	38536176	38536176	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	-	38536176	G	-	38536176	7	5	29	1	0	1	0	1	0	0	0	0	12015	985	34	0	1862	0	PLA2G6	22	38536176	Frame_Shift_Del	DEL	G	TCGA-A4-7288-01A-11D-2136-08	53821	38536176	12768390	93	1614											
TBC1D22A	25771	hgsc.bcm.edu	37	22	47507402	47507402	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	G	47507402	A	G	47507402	5	3	29	1	0	0	0	0	0	0	1	0	15623	434	15	3	1374	3	TBC1D22A	22	47507402	Splice_Site	SNP	A	TCGA-A4-7288-01A-11D-2136-08	8971226	47507402	3797164	94	1615											
CHD5	26038	ucsc.edu	37	1	6211114	6211114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	6211114	C	A	6211114	3	1	30	1	0	0	0	0	1	0	0	0	3330	912	32	4	5032	4	CHD5	1	6211114	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08		6211114	243039507	1	1616											
CLCA2	9635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	86890015	86890015	+	Silent	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	86890015	C	T	86890015	2	4	30	1	0	0	0	0	0	0	0	1	3460	680	24	2		2	CLCA2	1	86890015	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08	80678901	86890015	162360606	2	1617											
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154574741	154574741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	154574741	A	G	154574741	3	3	30	1	0	0	0	0	1	0	0	0	281	72	3	3	3359	3	ADAR	1	154574741	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	67684726	154574741	94675880	3	1618											
HDGF	3068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156715103	156715104	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	156715104	-	A	156715103	7	5	30	1	0	1	1	0	0	0	0	0	7025	1049	37	0	592	0	HDGF	1	156715103	Frame_Shift_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08	2140362	156715103	92535518	4	1619											
CCT7	10574	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73471795	73471796	+	Nonsense_Mutation	DNP	GC	GC	TT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	TT	73471796	GC	TT	73471795	4	4	30	1	0	0	0	0	0	1	0	0	2961	1306	46	4	592	4	CCT7	2	73471795	Nonsense_Mutation	DNP	GC	TCGA-A4-7583-01A-11D-2136-08		73471795	169727578	5	1620											
TBC1D8	11138	hgsc.bcm.edu	37	2	101706726	101706726	+	Silent	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	101706726	G	C	101706726	2	2	30	1	0	0	0	0	0	0	0	1	15637	1335	47	4		4	TBC1D8	2	101706726	Silent	SNP	G	TCGA-A4-7583-01A-11D-2136-08	28234931	101706726	141492647	6	1621											
GORASP2	26003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171806790	171806790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	171806790	T	C	171806790	3	2	30	1	0	0	0	0	1	0	0	0	6583	1667	58	3	439	3	GORASP2	2	171806790	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	70100064	171806790	71392583	7	1622											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179411556	179411556	+	Silent	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	179411556	A	G	179411556	2	3	30	1	0	0	0	0	0	0	0	1	16747	214	8	3		3	TTN	2	179411556	Silent	SNP	A	TCGA-A4-7583-01A-11D-2136-08	7604766	179411556	63787817	8	1623											
SF3B1	23451	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	198269882	198269882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	198269882	G	C	198269882	3	2	30	1	0	0	0	0	1	0	0	0	14162	1377	48	4	2517	4	SF3B1	2	198269882	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	18858326	198269882	44929491	9	1624											
SATB2	23314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	200193570	200193570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	200193570	C	A	200193570	3	1	30	1	0	0	0	0	1	0	0	0	13867	565	20	4	980	4	SATB2	2	200193570	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	1923688	200193570	43005803	10	1625											
NOP58	51602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203155146	203155146	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	203155146	T	C	203155146	2	2	30	1	0	0	0	0	0	0	0	1	10547	1403	49	3		3	NOP58	2	203155146	Silent	SNP	T	TCGA-A4-7583-01A-11D-2136-08	2961576	203155146	40044227	11	1626											
DALRD3	55152	broad.mit.edu	37	3	49055671	49055671	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	-	49055671	G	-	49055671	7	5	30	1	0	1	0	1	0	0	0	0	4231	1103	39	0	1429	0	DALRD3	3	49055671	Frame_Shift_Del	DEL	G	TCGA-A4-7583-01A-11D-2136-08		49055671	148966759	12	1627											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52588791	52588791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	52588791	G	T	52588791	3	4	30	1	0	0	0	0	1	0	0	0	11498	1261	44	4	527	4	PBRM1	3	52588791	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	3533120	52588791	145433639	13	1628											
IL17RB	55540	hgsc.bcm.edu	37	3	53891719	53891719	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	53891719	T	C	53891719	5	2	30	1	0	0	0	0	0	0	1	0	7647	1652	57	3	779	3	IL17RB	3	53891719	Splice_Site	SNP	T	TCGA-A4-7583-01A-11D-2136-08	1302928	53891719	144130711	14	1629											
ADCY5	111	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123010068	123010068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	123010068	C	T	123010068	3	4	30	1	0	0	0	0	1	0	0	0	297	478	17	2	582	2	ADCY5	3	123010068	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	69118349	123010068	75012362	15	1630											
CLDN18	51208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137742626	137742626	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	137742626	A	T	137742626	3	4	30	1	0	0	0	0	1	0	0	0	3481	43	2	5	577	5	CLDN18	3	137742626	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	14732558	137742626	60279804	16	1631											
TMEM41A	90407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185209397	185209397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	185209397	T	A	185209397	3	1	30	1	0	0	0	0	1	0	0	0	16176	1490	52	5	75	5	TMEM41A	3	185209397	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	47466771	185209397	12813033	17	1632											
ZNF718	255403	hgsc.bcm.edu	37	4	154974	154974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	154974	G	C	154974	3	2	30	1	0	0	0	0	1	0	0	0	18132	1349	47	4	513	4	ZNF718	4	154974	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		154974	190999302	18	1633											
NOP14	8602	ucsc.edu	37	4	2945921	2945921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	2945921	C	A	2945921	3	1	30	1	0	0	0	0	1	0	0	0	10543	680	24	4	827	4	NOP14	4	2945921	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	2790947	2945921	188208355	19	1634											
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	15989284	15989287	+	Frame_Shift_Del	DEL	ACCA	ACCA	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	ACCA	ACCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	-	15989287	ACCA	-	15989284	7	5	30	1	0	1	0	1	0	0	0	0	12565	405	14	0	497	0	PROM1	4	15989284	Frame_Shift_Del	DEL	ACCA	TCGA-A4-7583-01A-11D-2136-08	13043363	15989284	175164992	20	1635											
ATP10D	57205	broad.mit.edu	37	4	47538506	47538506	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	47538506	C	A	47538506	2	1	30	1	0	0	0	0	0	0	0	1	1118	639	23	4		4	ATP10D	4	47538506	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08	31549222	47538506	143615770	21	1636											
SLC10A6	345274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87749228	87749228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	87749228	G	C	87749228	3	2	30	1	0	0	0	0	1	0	0	0	14391	933	33	4	466	4	SLC10A6	4	87749228	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	40210722	87749228	103405048	22	1637											
CAMK2D	817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114434488	114434488	+	Silent	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	114434488	G	A	114434488	2	1	30	1	0	0	0	0	0	0	0	1	2603	933	33	2		2	CAMK2D	4	114434488	Silent	SNP	G	TCGA-A4-7583-01A-11D-2136-08	26685260	114434488	76719788	23	1638											
TLR3	7098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187004092	187004092	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	187004092	A	C	187004092	3	2	30	1	0	0	0	0	1	0	0	0	15964	363	13	5	1262	5	TLR3	4	187004092	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	72569604	187004092	4150184	24	1639											
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32403408	32403408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	32403408	G	A	32403408	3	1	30	1	0	0	0	0	1	0	0	0	17671	1294	45	2	1957	2	ZFR	5	32403408	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		32403408	148511852	25	1640											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	67576767	67576767	+	Silent	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	67576767	T	G	67576767	2	3	30	1	0	0	0	0	0	0	0	1	11925	1567	55	5		5	PIK3R1	5	67576767	Silent	SNP	T	TCGA-A4-7583-01A-11D-2136-08	35173359	67576767	113338493	26	1641											
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78975410	78975410	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	78975410	G	C	78975410	3	2	30	1	0	0	0	0	1	0	0	0	11431	1029	36	4	1263	4	PAPD4	5	78975410	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	11398643	78975410	101939850	27	1642											
SLIT3	6586	hgsc.bcm.edu	37	5	168112858	168112858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	168112858	T	C	168112858	3	2	30	1	0	0	0	0	1	0	0	0	14754	1725	60	3	1206	3	SLIT3	5	168112858	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	89137448	168112858	12802402	28	1643											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	66204808	66204808	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	66204808	T	G	66204808	3	3	30	1	0	0	0	0	1	0	0	0	5334	1841	64	5	9060	5	EYS	6	66204808	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08		66204808	104910259	29	1644											
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110746234	110746234	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	110746234	C	A	110746234	4	1	30	1	0	0	0	0	0	1	0	0	14460	922	32	4	161	4	SLC22A16	6	110746234	Nonsense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	44541426	110746234	60368833	30	1645											
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	13971323	13971323	+	Silent	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	13971323	C	G	13971323	2	3	30	1	0	0	0	0	0	0	0	1	5279	871	31	4		4	ETV1	7	13971323	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08		13971323	145167340	31	1646											
SUN3	256979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48035693	48035693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	48035693	C	T	48035693	3	4	30	1	0	0	0	0	1	0	0	0	15405	797	28	2	461	2	SUN3	7	48035693	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	34064370	48035693	111102970	32	1647											
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92151473	92151473	+	Silent	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	92151473	A	G	92151473	2	3	30	1	0	0	0	0	0	0	0	1	11742	214	8	3		3	PEX1	7	92151473	Silent	SNP	A	TCGA-A4-7583-01A-11D-2136-08	44115780	92151473	66987190	33	1648											
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	15508312	15508312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	15508312	G	A	15508312	3	1	30	1	0	0	0	0	1	0	0	0	16790	1145	40	1	425	1	TUSC3	8	15508312	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		15508312	130855710	34	1649											
PSD3	23362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	18430149	18430149	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	18430149	T	A	18430149	3	1	30	1	0	0	0	0	1	0	0	0	12658	1838	64	5	482	5	PSD3	8	18430149	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	2921837	18430149	127933873	35	1650											
TRIM35	23087	broad.mit.edu;bcgsc.ca	37	8	27168425	27168425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	27168425	G	T	27168425	3	4	30	1	0	0	0	0	1	0	0	0	16521	1000	35	4	1177	4	TRIM35	8	27168425	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	8738276	27168425	119195597	36	1651											
ZNF395	55893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28206721	28206721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	28206721	T	C	28206721	3	2	30	1	0	0	0	0	1	0	0	0	17893	1580	55	3	198	3	ZNF395	8	28206721	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	1038296	28206721	118157301	37	1652											
DGAT1	8694	hgsc.bcm.edu	37	8	145542536	145542536	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	145542536	T	G	145542536	3	3	30	1	0	0	0	0	1	0	0	0	4459	1609	56	5	1145	5	DGAT1	8	145542536	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	117335815	145542536	821486	38	1653											
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	34622092	34622092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	34622092	C	T	34622092	3	4	30	1	0	0	0	0	1	0	0	0	918	594	21	2	182	2	ARID3C	9	34622092	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08		34622092	106591339	39	1654											
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35547391	35547391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	35547391	G	C	35547391	3	2	30	1	0	0	0	0	1	0	0	0	13764	1319	46	4	875	4	RUSC2	9	35547391	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	925299	35547391	105666040	40	1655											
NANS	54187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100840514	100840514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	100840514	A	G	100840514	3	3	30	1	0	0	0	0	1	0	0	0	10162	275	10	3	502	3	NANS	9	100840514	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	65293123	100840514	40372917	41	1656											
DOLK	22845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131708944	131708945	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	131708945	-	G	131708944	7	5	30	1	0	1	1	0	0	0	0	0	4705	813	29	0	981	0	DOLK	9	131708944	Frame_Shift_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08	30868430	131708944	9504487	42	1657											
THNSL1	79896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	25312238	25312238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	25312238	C	T	25312238	3	4	30	1	0	0	0	0	1	0	0	0	15874	710	25	2	88	2	THNSL1	10	25312238	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08		25312238	110222509	43	1658											
OR4A5	81318	hgsc.bcm.edu	37	11	51411515	51411515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	51411515	G	A	51411515	3	1	30	1	0	0	0	0	1	0	0	0	11050	971	34	2	70	2	OR4A5	11	51411515	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		51411515	83595001	44	1659											
MYO7A	4647	broad.mit.edu	37	11	76888670	76888670	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	76888670	A	T	76888670	3	4	30	1	0	0	0	0	1	0	0	0	10089	217	8	5	2333	5	MYO7A	11	76888670	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	25477155	76888670	58117846	45	1660											
CCDC84	338657	broad.mit.edu;ucsc.edu	37	11	118869166	118869166	+	Silent	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	118869166	C	T	118869166	2	4	30	1	0	0	0	0	0	0	0	1	2860	755	27	1		1	CCDC84	11	118869166	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08	41980496	118869166	16137350	46	1661											
TULP3	7289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	3048537	3048537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	3048537	A	C	3048537	3	2	30	1	0	0	0	0	1	0	0	0	16787	43	2	5	1298	5	TULP3	12	3048537	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08		3048537	130803358	47	1662											
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112183962	112183962	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	112183962	T	C	112183962	2	2	30	1	0	0	0	0	0	0	0	1	108	1567	55	3		3	ACAD10	12	112183962	Silent	SNP	T	TCGA-A4-7583-01A-11D-2136-08	109135425	112183962	21667933	48	1663											
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	114523928	114523928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	114523928	T	C	114523928	3	2	30	1	0	0	0	0	1	0	0	0	6256	1725	60	3	94	3	GAS6	13	114523928	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08		114523928	645950	49	1664											
RBM23	55147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23374814	23374814	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	23374814	C	G	23374814	5	3	30	1	0	0	0	0	0	0	1	0	13136	521	18	4	899	4	RBM23	14	23374814	Splice_Site	SNP	C	TCGA-A4-7583-01A-11D-2136-08		23374814	83974726	50	1665											
MYEF2	50804	ucsc.edu	37	15	48446066	48446066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	48446066	C	T	48446066	3	4	30	1	0	0	0	0	1	0	0	0	10031	855	30	2	824	2	MYEF2	15	48446066	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08		48446066	54085326	51	1666											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18840922	18840922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	18840922	G	T	18840922	3	4	30	1	0	0	0	0	1	0	0	0	14808	962	34	4	1736	4	SMG1	16	18840922	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		18840922	71513831	52	1667											
FTSJD1	55783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71317552	71317552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	71317552	C	T	71317552	3	4	30	1	0	0	0	0	1	0	0	0	6097	922	32	2	44	2	FTSJD1	16	71317552	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	52476630	71317552	19037201	53	1668											
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81990321	81990321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	81990321	T	G	81990321	3	3	30	1	0	0	0	0	1	0	0	0	12043	1551	54	5	3714	5	PLCG2	16	81990321	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	10672769	81990321	8364432	54	1669											
ZNHIT3	9326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34849806	34849806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	34849806	A	G	34849806	3	3	30	1	0	0	0	0	1	0	0	0	18220	333	12	3	256	3	ZNHIT3	17	34849806	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08		34849806	46345404	55	1670											
DLX3	1747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48072053	48072053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	48072053	G	C	48072053	3	2	30	1	0	0	0	0	1	0	0	0	4574	1203	42	4	565	4	DLX3	17	48072053	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	13222247	48072053	33123157	56	1671											
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80885835	80885835	+	Silent	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	80885835	G	C	80885835	2	2	30	1	0	0	0	0	0	0	0	1	15645	1161	41	4		4	TBCD	17	80885835	Silent	SNP	G	TCGA-A4-7583-01A-11D-2136-08	32813782	80885835	309375	57	1672											
NPC1	4864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21128030	21128030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	21128030	G	T	21128030	3	4	30	1	0	0	0	0	1	0	0	0	10577	1000	35	4	2199	4	NPC1	18	21128030	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		21128030	56949218	58	1673											
RNF165	494470	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	44013351	44013353	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	-	44013353	CCC	-	44013351	7	5	30	1	0	1	0	1	0	0	0	0	13469	507	18	0	266	0	RNF165	18	44013351	In_Frame_Del	DEL	CCC	TCGA-A4-7583-01A-11D-2136-08	22885321	44013351	34063897	59	1674	25	2									
RNF165	494470	hgsc.bcm.edu;bcgsc.ca	37	18	44013357	44013357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	44013357	A	G	44013357	3	3	30	1	0	0	0	0	1	0	0	0	13469	188	7	3	272	3	RNF165	18	44013357	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	6	44013357	34063891	60	1675	25	2									
GRIN3B	116444	hgsc.bcm.edu	37	19	1005500	1005500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	1005500	T	C	1005500	3	2	30	1	0	0	0	0	1	0	0	0	6791	1667	58	3	2010	3	GRIN3B	19	1005500	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08		1005500	58123483	61	1676											
GPX4	2879	ucsc.edu;bcgsc.ca	37	19	1106396	1106396	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	1106396	C	G	1106396	3	3	30	1	0	0	0	0	1	0	0	0	6749	478	17	4	742	4	GPX4	19	1106396	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	100896	1106396	58022587	62	1677											
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11216253	11216253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	11216253	A	C	11216253	3	2	30	1	0	0	0	0	1	0	0	0	8711	275	10	5	685	5	LDLR	19	11216253	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	10109857	11216253	47912730	63	1678											
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16339616	16339616	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	16339616	C	G	16339616	3	3	30	1	0	0	0	0	1	0	0	0	734	477	17	4	998	4	AP1M1	19	16339616	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	5123363	16339616	42789367	64	1679											
MAST3	23031	broad.mit.edu;bcgsc.ca	37	19	18254602	18254603	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	CT	18254603	-	CT	18254602	7	5	30	1	0	1	1	0	0	0	0	0	9333	855	30	0	2364	0	MAST3	19	18254602	Frame_Shift_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08	1914986	18254602	40874381	65	1680											
ZNF99	7652	broad.mit.edu	37	19	22941129	22941129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	22941129	T	G	22941129	3	3	30	1	0	0	0	0	1	0	0	0	18216	1763	61	5	1815	5	ZNF99	19	22941129	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	4686527	22941129	36187854	66	1681			1	6		2	2	26	N	T_C	6.702679e-05
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu	37	19	22941154	22941154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	22941154	C	G	22941154	3	3	30	1	0	0	0	0	1	0	0	0	18216	796	28	4	1840	4	ZNF99	19	22941154	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	25	22941154	36187829	67	1682			1	6		2	2	26	N	T_C	6.702679e-05
SAMD4B	55095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39868382	39868391	+	Frame_Shift_Del	DEL	TCCCACTGAT	TCCCACTGAT	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	TCCCACTGAT	TCCCACTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	-	39868391	TCCCACTGAT	-	39868382	7	5	30	1	0	1	0	1	0	0	0	0	13835	1538	54	0	1384	0	SAMD4B	19	39868382	Frame_Shift_Del	DEL	TCCCACTGAT	TCGA-A4-7583-01A-11D-2136-08	16927228	39868382	19260601	68	1683											
IRF2BP1	26145	ucsc.edu	37	19	46388582	46388582	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	46388582	G	A	46388582	4	1	30	1	0	0	0	0	0	1	0	0	7836	1095	38	1	1307	1	IRF2BP1	19	46388582	Nonsense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	6520200	46388582	12740401	69	1684											
NOVA2	4858	broad.mit.edu;bcgsc.ca	37	19	46443735	46443735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	46443735	A	G	46443735	3	3	30	1	0	0	0	0	1	0	0	0	10562	362	13	3	617	3	NOVA2	19	46443735	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	55153	46443735	12685248	70	1685											
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3102965	3102965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	3102965	G	A	3102965	3	1	30	1	0	0	0	0	1	0	0	0	16906	1348	47	2	1317	2	UBOX5	20	3102965	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		3102965	59922555	71	1686											
HAO1	54363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	7886831	7886832	+	In_Frame_Ins	INS	-	-	TTT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	TTT	7886832	-	TTT	7886831	7	5	30	1	0	1	1	0	0	0	0	0	6958	98	4	0	441	0	HAO1	20	7886831	In_Frame_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08	4783866	7886831	55138689	72	1687											
NFATC2	4773	ucsc.edu	37	20	50049132	50049132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	A	50049132	G	A	50049132	3	1	30	1	0	0	0	0	1	0	0	0	10369	1116	39	1	639	1	NFATC2	20	50049132	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	42162301	50049132	12976388	73	1688											
BCAS1	8537	bcgsc.ca	37	20	52645037	52645037	+	Missense_Mutation	SNP	T	T	C	rs143209009		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	52645037	T	C	52645037	3	2	30	1	0	0	0	0	1	0	0	0	1350	1609	56	3	1173	3	BCAS1	20	52645037	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	2595905	52645037	10380483	74	1689											
TAF4	6874	hgsc.bcm.edu	37	20	60585136	60585136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	60585136	A	G	60585136	3	3	30	1	0	0	0	0	1	0	0	0	15538	391	14	3	1578	3	TAF4	20	60585136	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	7940099	60585136	2440384	75	1690											
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37418117	37418117	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	37418117	T	C	37418117	2	2	30	1	0	0	0	0	0	0	0	1	14146	1548	54	3		3	SETD4	21	37418117	Silent	SNP	T	TCGA-A4-7583-01A-11D-2136-08		37418117	10711778	76	1691											
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44841223	44841223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	C	44841223	T	C	44841223	3	2	30	1	0	0	0	0	1	0	0	0	14330	1609	56	3	1863	3	SIK1	21	44841223	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	7423106	44841223	3288672	77	1692											
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46911142	46911143	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	AT	46911143	GA	AT	46911142	3	1	30	1	0	0	0	0	1	0	0	0	3677	942	33	2	3512	2	COL18A1	21	46911142	Missense_Mutation	DNP	GA	TCGA-A4-7583-01A-11D-2136-08	2069919	46911142	1218753	78	1693											
PHF21B	112885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45312440	45312440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	45312440	G	T	45312440	3	4	30	1	0	0	0	0	1	0	0	0	11841	1232	43	4	1351	4	PHF21B	22	45312440	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		45312440	5992126	79	1694											
GAGE2A	729447	broad.mit.edu	37	X	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT	rs33925578		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	TAT	49208296	-	TAT	49208295	7	5	30	1	0	1	1	0	0	0	0	0	6197	668	24	0	236	0	GAGE2A	23	49208295	In_Frame_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08		49208295	106062265	80	1695											
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	86773063	86773063	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	86773063	C	G	86773063	3	3	30	1	0	0	0	0	1	0	0	0	8398	913	32	4	169	4	KLHL4	23	86773063	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	37564768	86773063	68497497	81	1696											
NRK	203447	broad.mit.edu	37	X	105167297	105167297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	105167297	A	G	105167297	3	3	30	1	0	0	0	0	1	0	0	0	10662	333	12	3	2868	3	NRK	23	105167297	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	18394234	105167297	50103263	82	1697											
GLUD2	2747	ucsc.edu	37	X	120182120	120182120	+	Silent	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	T	120182120	C	T	120182120	2	4	30	1	0	0	0	0	0	0	0	1	6484	639	23	1		1	GLUD2	23	120182120	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08	15014823	120182120	35088440	83	1698											
CDR1	1038	hgsc.bcm.edu	37	X	139866440	139866440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	G	139866440	A	G	139866440	3	3	30	1	0	0	0	0	1	0	0	0	3173	391	14	3	700	3	CDR1	23	139866440	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	19684320	139866440	15404120	84	1699											
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1248497	1248497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	1248497	A	G	1248497	3	3	31	1	0	0	0	0	1	0	0	0	3829	217	8	3	781	3	CPSF3L	1	1248497	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08		1248497	248002124	1	1700											
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	2430213	2430213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	2430213	A	G	2430213	3	3	31	1	0	0	0	0	1	0	0	0	12045	217	8	3	2450	3	PLCH2	1	2430213	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	1181716	2430213	246820408	2	1701											
KIAA1522	57648	broad.mit.edu	37	1	33237860	33237860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	33237860	G	A	33237860	3	1	31	1	0	0	0	0	1	0	0	0	8245	1087	38	1	3102	1	KIAA1522	1	33237860	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	30807647	33237860	216012761	3	1702											
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34329977	34329977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	34329977	C	T	34329977	3	4	31	1	0	0	0	0	1	0	0	0	7235	739	26	2	187	2	HMGB4	1	34329977	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	1092117	34329977	214920644	4	1703											
SFPQ	6421	broad.mit.edu	37	1	35658464	35658464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	35658464	G	T	35658464	3	4	31	1	0	0	0	0	1	0	0	0	14173	1261	44	4	1976	4	SFPQ	1	35658464	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	1328487	35658464	213592157	5	1704											
SSBP3	23648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	54870254	54870254	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	54870254	C	T	54870254	4	4	31	1	0	0	0	0	0	1	0	0	15193	508	18	2	1044	2	SSBP3	1	54870254	Nonsense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	19211790	54870254	194380367	6	1705											
LIX1L	128077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145497429	145497430	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	145497430	-	T	145497429	7	5	31	1	0	1	1	0	0	0	0	0	8839	333	12	0	648	0	LIX1L	1	145497429	Frame_Shift_Ins	INS	-	TCGA-A4-7584-01A-11D-2136-08	90627175	145497429	103753192	7	1706											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186083139	186083139	+	Silent	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	186083139	G	A	186083139	2	1	31	1	0	0	0	0	0	0	0	1	7227	933	33	2		2	HMCN1	1	186083139	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08	40585710	186083139	63167482	8	1707											
PROM2	150696	hgsc.bcm.edu	37	2	95952306	95952306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	95952306	A	G	95952306	3	3	31	1	0	0	0	0	1	0	0	0	12566	188	7	3	2093	3	PROM2	2	95952306	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08		95952306	147247067	9	1708											
GCC2	9648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109109239	109109239	+	Silent	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	109109239	C	T	109109239	2	4	31	1	0	0	0	0	0	0	0	1	6293	581	21	2		2	GCC2	2	109109239	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	13156933	109109239	134090134	10	1709											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179611391	179611391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	179611391	G	C	179611391	3	2	31	1	0	0	0	0	1	0	0	0	16747	1299	45	4	94561	4	TTN	2	179611391	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	70502152	179611391	63587982	11	1710											
GPR1	2825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207040930	207040930	+	Silent	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	207040930	G	A	207040930	2	1	31	1	0	0	0	0	0	0	0	1	6628	933	33	2		2	GPR1	2	207040930	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08	27429539	207040930	36158443	12	1711											
RBM44	375316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238722326	238722326	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	238722326	G	T	238722326	5	4	31	1	0	0	0	0	0	0	1	0	13151	1275	44	4	79	4	RBM44	2	238722326	Splice_Site	SNP	G	TCGA-A4-7584-01A-11D-2136-08	31681396	238722326	4477047	13	1712											
GORASP1	64689	hgsc.bcm.edu	37	3	39148980	39148980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	39148980	T	C	39148980	3	2	31	1	0	0	0	0	1	0	0	0	6582	1696	59	3	1305	3	GORASP1	3	39148980	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08		39148980	158873450	14	1713											
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51697207	51697207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	51697207	C	G	51697207	3	3	31	1	0	0	0	0	1	0	0	0	13007	855	30	4	4257	4	RAD54L2	3	51697207	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	12548227	51697207	146325223	15	1714											
MITF	4286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69928532	69928532	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	69928532	A	T	69928532	4	4	31	1	0	0	0	0	0	1	0	0	9603	363	13	5	523	5	MITF	3	69928532	Nonsense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	18231325	69928532	128093898	16	1715											
AP2M1	1173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183898969	183898969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	183898969	T	C	183898969	3	2	31	1	0	0	0	0	1	0	0	0	742	1725	60	3	681	3	AP2M1	3	183898969	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	113970437	183898969	14123461	17	1716											
FIP1L1	81608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	54266007	54266007	+	Splice_Site	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	54266007	G	C	54266007	5	2	31	1	0	0	0	0	0	0	1	0	5903	1275	44	4	854	4	FIP1L1	4	54266007	Splice_Site	SNP	G	TCGA-A4-7584-01A-11D-2136-08		54266007	136888269	18	1717											
PLRG1	5356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155465648	155465648	+	Silent	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	155465648	T	C	155465648	2	2	31	1	0	0	0	0	0	0	0	1	12113	1606	56	3		3	PLRG1	4	155465648	Silent	SNP	T	TCGA-A4-7584-01A-11D-2136-08	101199641	155465648	35688628	19	1718											
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	95761622	95761622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	95761622	C	G	95761622	3	3	31	1	0	0	0	0	1	0	0	0	11607	835	29	4	2011	4	PCSK1	5	95761622	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08		95761622	85153638	20	1719											
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156590018	156590018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	156590018	G	C	156590018	3	2	31	1	0	0	0	0	1	0	0	0	5615	1203	42	4	563	4	FAM71B	5	156590018	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	60828396	156590018	24325242	21	1720											
C6orf136	221545	broad.mit.edu	37	6	30615105	30615105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	30615105	A	G	30615105	3	3	31	1	0	0	0	0	1	0	0	0	2333	295	11	3	99	3	C6orf136	6	30615105	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08		30615105	140499962	22	1721											
BAK1	578	hgsc.bcm.edu;broad.mit.edu	37	6	33543199	33543199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	33543199	G	A	33543199	3	1	31	1	0	0	0	0	1	0	0	0	1305	1144	40	1	421	1	BAK1	6	33543199	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	2928094	33543199	137571868	23	1722											
BAI3	577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	69666026	69666027	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	69666027	-	A	69666026	7	5	31	1	0	1	1	0	0	0	0	0	1300	1059	37	0	1324	0	BAI3	6	69666026	Frame_Shift_Ins	INS	-	TCGA-A4-7584-01A-11D-2136-08	36122827	69666026	101449041	24	1723											
DDO	8528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110734538	110734538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	110734538	G	A	110734538	3	1	31	1	0	0	0	0	1	0	0	0	4336	1261	44	2	913	2	DDO	6	110734538	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	41068512	110734538	60380529	25	1724											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152631610	152631610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	152631610	G	A	152631610	3	1	31	1	0	0	0	0	1	0	0	0	15457	1203	42	2	9758	2	SYNE1	6	152631610	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	41897072	152631610	18483457	26	1725											
CYP2W1	54905	hgsc.bcm.edu	37	7	1024913	1024913	+	Missense_Mutation	SNP	G	G	C	rs143596553		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	1024913	G	C	1024913	3	2	31	1	0	0	0	0	1	0	0	0	4178	1261	44	4	613	4	CYP2W1	7	1024913	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		1024913	158113750	27	1726											
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5568977	5568977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	5568977	T	C	5568977	3	2	31	1	0	0	0	0	1	0	0	0	193	1551	54	3	965	3	ACTB	7	5568977	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	4544064	5568977	153569686	28	1727											
ANKMY2	57037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	16650259	16650260	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	CT	16650260	TC	CT	16650259	3	2	31	1	0	0	0	0	1	0	0	0	635	1792	62	3	684	3	ANKMY2	7	16650259	Missense_Mutation	DNP	TC	TCGA-A4-7584-01A-11D-2136-08	11081282	16650259	142488404	29	1728											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82584714	82584714	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	82584714	T	A	82584714	3	1	31	1	0	0	0	0	1	0	0	0	11590	1464	51	5	9974	5	PCLO	7	82584714	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	65934455	82584714	76553949	30	1729											
WDR91	29062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134871027	134871027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	134871027	A	T	134871027	3	4	31	1	0	0	0	0	1	0	0	0	17350	420	15	5	127	5	WDR91	7	134871027	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	52286313	134871027	24267636	31	1730											
EFR3A	23167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	132968018	132968018	+	Silent	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	132968018	C	T	132968018	2	4	31	1	0	0	0	0	0	0	0	1	4960	697	25	2		2	EFR3A	8	132968018	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08		132968018	13396004	32	1731											
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132623219	132623219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	132623219	T	C	132623219	3	2	31	1	0	0	0	0	1	0	0	0	17064	1551	54	3	352	3	USP20	9	132623219	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08		132623219	8590212	33	1732											
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5139704	5139704	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	5139704	G	C	5139704	3	2	31	1	0	0	0	0	1	0	0	0	471	1377	48	4	341	4	AKR1C3	10	5139704	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		5139704	130395043	34	1733											
TACR2	6865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71175766	71175766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	71175766	A	T	71175766	3	4	31	1	0	0	0	0	1	0	0	0	15518	246	9	5	902	5	TACR2	10	71175766	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	66036062	71175766	64358981	35	1734											
MRPL17	63875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6703594	6703594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	6703594	G	A	6703594	3	1	31	1	0	0	0	0	1	0	0	0	9789	1232	43	2	248	2	MRPL17	11	6703594	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		6703594	128302922	36	1735											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102987369	102987369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	102987369	T	C	102987369	3	2	31	1	0	0	0	0	1	0	0	0	4848	1638	57	3	710	3	DYNC2H1	11	102987369	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	96283775	102987369	32019147	37	1736											
FDXACB1	91893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111749725	111749725	+	Silent	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	111749725	A	G	111749725	2	3	31	1	0	0	0	0	0	0	0	1	5813	330	12	3		3	FDXACB1	11	111749725	Silent	SNP	A	TCGA-A4-7584-01A-11D-2136-08	8762356	111749725	23256791	38	1737											
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	12483592	12483592	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	-	12483592	T	-	12483592	7	5	31	1	0	1	0	1	0	0	0	0	9231	1493	52	0	634	0	MANSC1	12	12483592	Frame_Shift_Del	DEL	T	TCGA-A4-7584-01A-11D-2136-08		12483592	121368303	39	1738											
GUCY2C	2984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14772233	14772233	+	Silent	SNP	A	A	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	14772233	A	C	14772233	2	2	31	1	0	0	0	0	0	0	0	1	6903	175	7	5		5	GUCY2C	12	14772233	Silent	SNP	A	TCGA-A4-7584-01A-11D-2136-08	2288641	14772233	119079662	40	1739											
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41316146	41316146	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	41316146	C	T	41316146	4	4	31	1	0	0	0	0	0	1	0	0	3642	479	17	2	330	2	CNTN1	12	41316146	Nonsense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	26543913	41316146	92535749	41	1740											
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57975209	57975209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	57975209	C	T	57975209	3	4	31	1	0	0	0	0	1	0	0	0	8312	643	23	1	2865	1	KIF5A	12	57975209	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	16659063	57975209	75876686	42	1741											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	78604234	78604234	+	Silent	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	78604234	C	T	78604234	2	4	31	1	0	0	0	0	0	0	0	1	10192	776	27	1		1	NAV3	12	78604234	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	20629025	78604234	55247661	43	1742											
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105527569	105527569	+	Silent	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	105527569	C	G	105527569	2	3	31	1	0	0	0	0	0	0	0	1	8213	900	32	4		4	KIAA1033	12	105527569	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	26923335	105527569	28324326	44	1743											
ABCB9	23457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123429030	123429030	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	-	123429030	A	-	123429030	7	5	31	1	0	1	0	1	0	0	0	0	48	420	15	0	1036	0	ABCB9	12	123429030	Frame_Shift_Del	DEL	A	TCGA-A4-7584-01A-11D-2136-08	17901461	123429030	10422865	45	1744											
KCTD4	386618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	45768535	45768535	+	Silent	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	45768535	G	A	45768535	2	1	31	1	0	0	0	0	0	0	0	1	8118	1368	48	2		2	KCTD4	13	45768535	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08		45768535	69401343	46	1745											
VRK1	7443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	97321567	97321567	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	97321567	T	A	97321567	3	1	31	1	0	0	0	0	1	0	0	0	17231	1606	56	5	609	5	VRK1	14	97321567	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08		97321567	10027973	47	1746											
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	45453182	45453182	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	-	45453182	C	-	45453182	7	5	31	1	0	1	0	1	0	0	0	0	4802	739	26	0	3960	0	DUOX1	15	45453182	Frame_Shift_Del	DEL	C	TCGA-A4-7584-01A-11D-2136-08		45453182	57078210	48	1747											
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45456067	45456068	+	Missense_Mutation	DNP	GT	GT	TA	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	TA	45456068	GT	TA	45456067	3	4	31	1	0	0	0	0	1	0	0	0	4802	1145	40	4	4610	4	DUOX1	15	45456067	Missense_Mutation	DNP	GT	TCGA-A4-7584-01A-11D-2136-08	2885	45456067	57075325	49	1748											
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64791991	64791991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	64791991	T	C	64791991	3	2	31	1	0	0	0	0	1	0	0	0	18047	1551	54	3	375	3	ZNF609	15	64791991	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	19335924	64791991	37739401	50	1749											
CLCN7	1186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1505793	1505793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	1505793	C	T	1505793	3	4	31	1	0	0	0	0	1	0	0	0	3470	623	22	2	1557	2	CLCN7	16	1505793	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08		1505793	88848960	51	1750											
TEKT5	146279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	10721483	10721483	+	Missense_Mutation	SNP	C	C	T	rs200414450		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	10721483	C	T	10721483	3	4	31	1	0	0	0	0	1	0	0	0	15768	536	19	1	46	1	TEKT5	16	10721483	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	9215690	10721483	79633270	52	1751											
EEF2K	29904	ucsc.edu	37	16	22295229	22295229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	22295229	C	T	22295229	3	4	31	1	0	0	0	0	1	0	0	0	4932	710	25	2	2156	2	EEF2K	16	22295229	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	11573746	22295229	68059524	53	1752											
CIAPIN1	57019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57463170	57463170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	57463170	C	T	57463170	3	4	31	1	0	0	0	0	1	0	0	0	3421	768	27	1	91	1	CIAPIN1	16	57463170	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	35167941	57463170	32891583	54	1753											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7727461	7727461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	7727461	G	A	7727461	3	1	31	1	0	0	0	0	1	0	0	0	4604	1058	37	1	11799	1	DNAH2	17	7727461	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		7727461	73467749	55	1754											
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28407885	28407885	+	Silent	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	28407885	G	C	28407885	2	2	31	1	0	0	0	0	0	0	0	1	4940	1335	47	4		4	EFCAB5	17	28407885	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08	20680424	28407885	52787325	56	1755											
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39622089	39622090	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	39622090	-	C	39622089	7	5	31	1	0	1	1	0	0	0	0	0	8475	1667	58	0	722	0	KRT32	17	39622089	Frame_Shift_Ins	INS	-	TCGA-A4-7584-01A-11D-2136-08	11214204	39622089	41573121	57	1756											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65214853	65214853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	65214853	T	G	65214853	3	3	31	1	0	0	0	0	1	0	0	0	7056	1783	62	5	5880	5	HELZ	17	65214853	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	25592764	65214853	15980357	58	1757											
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	71199203	71199203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	71199203	C	A	71199203	3	1	31	1	0	0	0	0	1	0	0	0	3659	739	26	4	2168	4	COG1	17	71199203	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	5984350	71199203	9996007	59	1758											
FDXR	2232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72861043	72861043	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	72861043	A	C	72861043	3	2	31	1	0	0	0	0	1	0	0	0	5814	333	12	5	879	5	FDXR	17	72861043	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	1661840	72861043	8334167	60	1759											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	73752854	73752855	+	In_Frame_Ins	INS	-	-	GCTGCA	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	GCTGCA	73752855	-	GCTGCA	73752854	7	5	31	1	0	1	1	0	0	0	0	0	7904	893	31	0	5272	0	ITGB4	17	73752854	In_Frame_Ins	INS	-	TCGA-A4-7584-01A-11D-2136-08	891811	73752854	7442356	61	1760											
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2913257	2913257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	2913257	G	T	2913257	3	4	31	1	0	0	0	0	1	0	0	0	5096	1232	43	4	3047	4	EMILIN2	18	2913257	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		2913257	75163991	62	1761											
SS18	6760	broad.mit.edu	37	18	23670482	23670483	+	Missense_Mutation	DNP	GA	GA	AG	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	AG	23670483	GA	AG	23670482	3	1	31	1	0	0	0	0	1	0	0	0	15187	1174	41	2	1248	2	SS18	18	23670482	Missense_Mutation	DNP	GA	TCGA-A4-7584-01A-11D-2136-08	20757225	23670482	54406766	63	1762											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9059472	9059472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	9059472	G	T	9059472	3	4	31	1	0	0	0	0	1	0	0	0	9980	1203	42	4	15877	4	MUC16	19	9059472	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		9059472	50069511	64	1763											
ZNF317	57693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9271676	9271676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	9271676	G	A	9271676	3	1	31	1	0	0	0	0	1	0	0	0	17847	1232	43	2	1377	2	ZNF317	19	9271676	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	212204	9271676	49857307	65	1764											
C19orf57	79173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13996869	13996869	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	13996869	C	G	13996869	5	3	31	1	0	0	0	0	0	0	1	0	1941	811	28	4	253	4	C19orf57	19	13996869	Splice_Site	SNP	C	TCGA-A4-7584-01A-11D-2136-08	4725193	13996869	45132114	66	1765											
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35828752	35828752	+	Silent	SNP	C	C	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	35828752	C	T	35828752	2	4	31	1	0	0	0	0	0	0	0	1	2987	506	18	2		2	CD22	19	35828752	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	21831883	35828752	23300231	67	1766											
EXOC3L2	90332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	45720794	45720794	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	-	45720794	G	-	45720794	7	5	31	1	0	1	0	1	0	0	0	0	5307	1115	39	0	430	0	EXOC3L2	19	45720794	Frame_Shift_Del	DEL	G	TCGA-A4-7584-01A-11D-2136-08	9892042	45720794	13408189	68	1767											
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50161552	50161552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	50161552	A	C	50161552	3	2	31	1	0	0	0	0	1	0	0	0	13881	131	5	5	3873	5	SCAF1	19	50161552	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	4440758	50161552	8967431	69	1768											
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55144006	55144006	+	Silent	SNP	C	C	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	55144006	C	A	55144006	2	1	31	1	0	0	0	0	0	0	0	1	8797	784	28	4		4	LILRB1	19	55144006	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	4982454	55144006	3984977	70	1769											
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57839968	57839968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	57839968	G	A	57839968	3	1	31	1	0	0	0	0	1	0	0	0	17988	1319	46	2	1152	2	ZNF543	19	57839968	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	2695962	57839968	1289015	71	1770											
GDF5	8200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34021936	34021936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	34021936	G	T	34021936	3	4	31	1	0	0	0	0	1	0	0	0	6323	971	34	4	232	4	GDF5	20	34021936	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		34021936	29003584	72	1771											
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44578919	44578919	+	Silent	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	44578919	G	C	44578919	2	2	31	1	0	0	0	0	0	0	0	1	17864	1219	43	4		4	ZNF335	20	44578919	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08	10556983	44578919	18446601	73	1772											
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49366295	49366295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	49366295	A	G	49366295	3	3	31	1	0	0	0	0	1	0	0	0	11453	217	8	3	399	3	PARD6B	20	49366295	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	4787376	49366295	13659225	74	1773											
BAGE	574	hgsc.bcm.edu	37	21	11097541	11097541	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	A	11097541	C	A	11097541	5	1	31	1	0	0	0	0	0	0	1	0	1291	579	20	4	1	4	BAGE	21	11097541	Splice_Site	SNP	C	TCGA-A4-7584-01A-11D-2136-08		11097541	37032354	75	1774											
GAL3ST1	9514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30951203	30951203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	G	30951203	C	G	30951203	3	3	31	1	0	0	0	0	1	0	0	0	6204	710	25	4	266	4	GAL3ST1	22	30951203	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08		30951203	20353363	76	1775											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37914027	37914027	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	C	37914027	G	C	37914027	3	2	31	1	0	0	0	0	1	0	0	0	2646	1281	45	4	2850	4	CARD10	22	37914027	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	6962824	37914027	13390539	77	1776											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	44870257	44870257	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	-	44870257	T	-	44870257	7	5	31	1	0	1	0	1	0	0	0	0	8144	1493	52	0	454	0	KDM6A	23	44870257	Frame_Shift_Del	DEL	T	TCGA-A4-7584-01A-11D-2136-08		44870257	110400303	78	1777											
MPP1	4354	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	154033610	154033610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	T	154033610	G	T	154033610	3	4	31	1	0	0	0	0	1	0	0	0	9740	1310	46	4	1425	4	MPP1	23	154033610	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	109163353	154033610	1236950	79	1778											
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	2160390	C	G	2160390	3	3	32	1	0	0	0	0	1	0	0	0	14370	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08		2160390	247090231	1	1779											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32207416	32207416	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	32207416	C	A	32207416	4	1	32	1	0	0	0	0	0	1	0	0	1299	835	29	4	3287	4	BAI2	1	32207416	Nonsense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	30047026	32207416	217043205	2	1780											
TOE1	114034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45808095	45808095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	45808095	C	G	45808095	3	3	32	1	0	0	0	0	1	0	0	0	16361	680	24	4	554	4	TOE1	1	45808095	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	13600679	45808095	203442526	3	1781											
CCDC17	149483	broad.mit.edu	37	1	46086774	46086774	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	46086774	G	T	46086774	4	4	32	1	0	0	0	0	0	1	0	0	2795	1294	45	4	480	4	CCDC17	1	46086774	Nonsense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	278679	46086774	203163847	4	1782											
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	82456455	82456455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	82456455	C	G	82456455	3	3	32	1	0	0	0	0	1	0	0	0	8923	912	32	4	3912	4	LPHN2	1	82456455	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	36369681	82456455	166794166	5	1783											
C1orf51	148523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150259000	150259000	+	Silent	SNP	T	T	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	150259000	T	A	150259000	2	1	32	1	0	0	0	0	0	0	0	1	2045	1538	54	5		5	C1orf51	1	150259000	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08	67802545	150259000	98991621	6	1784											
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153924520	153924520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	153924520	C	A	153924520	3	1	32	1	0	0	0	0	1	0	0	0	3902	739	26	4	1130	4	CRTC2	1	153924520	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	3665520	153924520	95326101	7	1785											
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	162344114	162344114	+	Silent	SNP	T	T	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	162344114	T	C	162344114	2	2	32	1	0	0	0	0	0	0	0	1	1986	1741	61	3		3	C1orf111	1	162344114	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08	8419594	162344114	86906507	8	1786											
IVNS1ABP	10625	hgsc.bcm.edu	37	1	185278246	185278246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	185278246	A	G	185278246	3	3	32	1	0	0	0	0	1	0	0	0	7937	372	13	3	1806	3	IVNS1ABP	1	185278246	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	22934132	185278246	63972375	9	1787											
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	190067269	190067269	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	190067269	A	T	190067269	4	4	32	1	0	0	0	0	0	1	0	0	5601	131	5	5	124	5	FAM5C	1	190067269	Nonsense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	4789023	190067269	59183352	10	1788											
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu	37	1	198704382	198704382	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	198704382	G	A	198704382	5	1	32	1	0	0	0	0	0	0	1	0	12810	1391	48	2	2495	2	PTPRC	1	198704382	Splice_Site	SNP	G	TCGA-A4-7585-01A-11D-2136-08	8637113	198704382	50546239	11	1789											
URB2	9816	broad.mit.edu	37	1	229771589	229771589	+	Missense_Mutation	SNP	G	G	A	rs139241970		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	229771589	G	A	229771589	3	1	32	1	0	0	0	0	1	0	0	0	17037	1087	38	1	1239	1	URB2	1	229771589	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	31067207	229771589	19479032	12	1790											
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	10016047	10016047	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	10016047	G	C	10016047	3	2	32	1	0	0	0	0	1	0	0	0	15532	1175	41	4	633	4	TAF1B	2	10016047	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08		10016047	233183326	13	1791											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27460276	27460276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	27460276	G	A	27460276	3	1	32	1	0	0	0	0	1	0	0	0	2567	1175	41	2	4536	2	CAD	2	27460276	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	17444229	27460276	215739097	14	1792											
TSGA10	80705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99720473	99720473	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	99720473	C	A	99720473	4	1	32	1	0	0	0	0	0	1	0	0	16629	893	31	4	1576	4	TSGA10	2	99720473	Nonsense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	72260197	99720473	143478900	15	1793											
LCT	3938	broad.mit.edu;bcgsc.ca	37	2	136566494	136566494	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	136566494	T	-	136566494	7	5	32	1	0	1	0	1	0	0	0	0	8700	1606	56	0	2400	0	LCT	2	136566494	Frame_Shift_Del	DEL	T	TCGA-A4-7585-01A-11D-2136-08	36846021	136566494	106632879	16	1794											
DARS	1615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	136736937	136736937	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	136736937	C	A	136736937	5	1	32	1	0	0	0	0	0	0	1	0	4243	927	32	4	1437	4	DARS	2	136736937	Splice_Site	SNP	C	TCGA-A4-7585-01A-11D-2136-08	170443	136736937	106462436	17	1795											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	138169186	138169186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	138169186	C	A	138169186	3	1	32	1	0	0	0	0	1	0	0	0	15892	709	25	4	2660	4	THSD7B	2	138169186	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	1432249	138169186	105030187	18	1796											
KIF5C	3800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	149835496	149835496	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	149835496	C	T	149835496	4	4	32	1	0	0	0	0	0	1	0	0	8314	827	29	2	1326	2	KIF5C	2	149835496	Nonsense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	11666310	149835496	93363877	19	1797											
TTN	7273	bcgsc.ca	37	2	179449124	179449124	+	Silent	SNP	T	T	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	179449124	T	C	179449124	2	2	32	1	0	0	0	0	0	0	0	1	16747	1490	52	3		3	TTN	2	179449124	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08	29613628	179449124	63750249	20	1798											
SESTD1	91404	bcgsc.ca	37	2	180041254	180041254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	180041254	T	G	180041254	3	3	32	1	0	0	0	0	1	0	0	0	14140	1609	56	5	1974	5	SESTD1	2	180041254	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	592130	180041254	63158119	21	1799											
USP37	57695	hgsc.bcm.edu;bcgsc.ca	37	2	219328058	219328058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	219328058	A	G	219328058	3	3	32	1	0	0	0	0	1	0	0	0	17080	304	11	3	461	3	USP37	2	219328058	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	39286804	219328058	23871315	22	1800											
PTPRN	5798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220161767	220161767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	220161767	A	C	220161767	3	2	32	1	0	0	0	0	1	0	0	0	12820	188	7	5	799	5	PTPRN	2	220161767	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	833709	220161767	23037606	23	1801											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238275884	238275884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	238275884	T	C	238275884	3	2	32	1	0	0	0	0	1	0	0	0	3703	1725	60	3	4723	3	COL6A3	2	238275884	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	18114117	238275884	4923489	24	1802											
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9512542	9512542	+	Silent	SNP	T	T	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	9512542	T	C	9512542	2	2	32	1	0	0	0	0	0	0	0	1	14147	1606	56	3		3	SETD5	3	9512542	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08		9512542	188509888	25	1803											
CAPN7	23473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	15262464	15262464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	15262464	C	T	15262464	3	4	32	1	0	0	0	0	1	0	0	0	2633	478	17	2	632	2	CAPN7	3	15262464	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	5749922	15262464	182759966	26	1804											
EXOSC7	23016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45048921	45048921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	45048921	C	T	45048921	3	4	32	1	0	0	0	0	1	0	0	0	5321	875	31	1	651	1	EXOSC7	3	45048921	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	29786457	45048921	152973509	27	1805											
TREX1	11277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48508760	48508760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	48508760	A	T	48508760	3	4	32	1	0	0	0	0	1	0	0	0	16488	159	6	5	873	5	TREX1	3	48508760	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	3459839	48508760	149513670	28	1806											
VPS8	23355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184700420	184700420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	184700420	C	T	184700420	3	4	32	1	0	0	0	0	1	0	0	0	17230	826	29	2	3641	2	VPS8	3	184700420	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	136191660	184700420	13322010	29	1807											
IDUA	3425	hgsc.bcm.edu	37	4	980971	980971	+	Missense_Mutation	SNP	T	T	G	rs10794537		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	980971	T	G	980971	3	3	32	1	0	0	0	0	1	0	0	0	7511	1461	51	5	101	5	IDUA	4	980971	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08		980971	190173305	30	1808											
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89042889	89042889	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	89042889	A	C	89042889	3	2	32	1	0	0	0	0	1	0	0	0	69	449	16	5	1424	5	ABCG2	4	89042889	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	88061918	89042889	102111387	31	1809											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123156097	123156097	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	123156097	G	T	123156097	4	4	32	1	0	0	0	0	0	1	0	0	8215	943	33	4	3591	4	KIAA1109	4	123156097	Nonsense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	34113208	123156097	67998179	32	1810											
PCDH18	54510	broad.mit.edu;bcgsc.ca	37	4	138452043	138452043	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	138452043	A	-	138452043	7	5	32	1	0	1	0	1	0	0	0	0	11520	214	8	0	2223	0	PCDH18	4	138452043	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08	15295946	138452043	52702233	33	1811											
FASTKD3	79072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7867621	7867621	+	Silent	SNP	A	A	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	7867621	A	G	7867621	2	3	32	1	0	0	0	0	0	0	0	1	5694	291	11	3		3	FASTKD3	5	7867621	Silent	SNP	A	TCGA-A4-7585-01A-11D-2136-08		7867621	173047639	34	1812											
ADAMTS6	11174	hgsc.bcm.edu	37	5	64537954	64537954	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	64537954	T	G	64537954	3	3	32	1	0	0	0	0	1	0	0	0	270	1406	49	5	1487	5	ADAMTS6	5	64537954	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	56670333	64537954	116377306	35	1813											
SPATA9	83890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94994451	94994451	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	94994451	C	G	94994451	3	3	32	1	0	0	0	0	1	0	0	0	15028	681	24	4	127	4	SPATA9	5	94994451	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	30456497	94994451	85920809	36	1814											
SEC24A	10802	broad.mit.edu;bcgsc.ca	37	5	133997149	133997160	+	In_Frame_Del	DEL	CTCACAAACAAA	CTCACAAACAAA	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	CTCACAAACAAA	CTCACAAACAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	133997160	CTCACAAACAAA	-	133997149	7	5	32	1	0	1	0	1	0	0	0	0	14007	668	24	0	444	0	SEC24A	5	133997149	In_Frame_Del	DEL	CTCACAAACAAA	TCGA-A4-7585-01A-11D-2136-08	39002698	133997149	46918111	37	1815											
SLC36A2	153201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150701645	150701645	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	150701645	A	T	150701645	3	4	32	1	0	0	0	0	1	0	0	0	14607	188	7	5	317	5	SLC36A2	5	150701645	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	16704496	150701645	30213615	38	1816											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169463529	169463529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	169463529	A	G	169463529	3	3	32	1	0	0	0	0	1	0	0	0	4689	14	1	3	3777	3	DOCK2	5	169463529	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	18761884	169463529	11451731	39	1817											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176696648	176696648	+	Silent	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	176696648	C	T	176696648	2	4	32	1	0	0	0	0	0	0	0	1	10676	477	17	2		2	NSD1	5	176696648	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	7233119	176696648	4218612	40	1818											
FAM50B	26240	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	3850443	3850443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	3850443	C	T	3850443	3	4	32	1	0	0	0	0	1	0	0	0	5585	768	27	1	400	1	FAM50B	6	3850443	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08		3850443	167264624	41	1819											
SLC35B3	51000	hgsc.bcm.edu	37	6	8413926	8413926	+	Silent	SNP	T	T	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	8413926	T	C	8413926	2	2	32	1	0	0	0	0	0	0	0	1	14590	1393	49	3		3	SLC35B3	6	8413926	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08	4563483	8413926	162701141	42	1820											
ATXN1	6310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	16327407	16327407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	16327407	G	A	16327407	3	1	32	1	0	0	0	0	1	0	0	0	1209	1115	39	1	1320	1	ATXN1	6	16327407	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	7913481	16327407	154787660	43	1821											
CLPS	1208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	35765001	35765001	+	Missense_Mutation	SNP	C	C	G	rs140966197	byfrequency;alternate_allele	TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	35765001	C	G	35765001	3	3	32	1	0	0	0	0	1	0	0	0	3555	652	23	4	285	4	CLPS	6	35765001	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	19437594	35765001	135350066	44	1822											
MRPL2	51069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43023646	43023646	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	43023646	A	C	43023646	3	2	32	1	0	0	0	0	1	0	0	0	9792	333	12	5	309	5	MRPL2	6	43023646	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	7258645	43023646	128091421	45	1823											
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76412443	76412443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	76412443	G	A	76412443	3	1	32	1	0	0	0	0	1	0	0	0	14063	1319	46	2	2445	2	SENP6	6	76412443	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	33388797	76412443	94702624	46	1824											
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	146234630	146234630	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	146234630	C	G	146234630	3	3	32	1	0	0	0	0	1	0	0	0	14304	884	31	4	786	4	SHPRH	6	146234630	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	69822187	146234630	24880437	47	1825											
LPA	4018	broad.mit.edu;bcgsc.ca	37	6	161027563	161027563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	161027563	C	T	161027563	3	4	32	1	0	0	0	0	1	0	0	0	8910	536	19	1	3483	1	LPA	6	161027563	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	14792933	161027563	10087504	48	1826											
FAM188B	84182	hgsc.bcm.edu	37	7	30893077	30893077	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	30893077	T	C	30893077	5	2	32	1	0	0	0	0	0	0	1	0	5519	1652	57	3	1725	3	FAM188B	7	30893077	Splice_Site	SNP	T	TCGA-A4-7585-01A-11D-2136-08		30893077	128245586	49	1827											
KIAA0895	23366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	36396613	36396613	+	Silent	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	36396613	G	A	36396613	2	1	32	1	0	0	0	0	0	0	0	1	8204	1281	45	2		2	KIAA0895	7	36396613	Silent	SNP	G	TCGA-A4-7585-01A-11D-2136-08	5503536	36396613	122742050	50	1828											
VPS41	27072	broad.mit.edu;bcgsc.ca	37	7	38783049	38783049	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	38783049	T	A	38783049	3	1	32	1	0	0	0	0	1	0	0	0	17222	1435	50	5	513	5	VPS41	7	38783049	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	2386436	38783049	120355614	51	1829											
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	43918082	43918082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	43918082	A	C	43918082	3	2	32	1	0	0	0	0	1	0	0	0	17038	101	4	5	1819	5	URGCP	7	43918082	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	5135033	43918082	115220581	52	1830											
ABCA13	154664	broad.mit.edu	37	7	48315672	48315672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	48315672	G	A	48315672	3	1	32	1	0	0	0	0	1	0	0	0	31	1174	41	2	6304	2	ABCA13	7	48315672	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	4397590	48315672	110822991	53	1831											
ABCA13	154664	broad.mit.edu;bcgsc.ca	37	7	48317816	48317817	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	48317817	-	T	48317816	7	5	32	1	0	1	1	0	0	0	0	0	31	1029	36	0	6924	0	ABCA13	7	48317816	Frame_Shift_Ins	INS	-	TCGA-A4-7585-01A-11D-2136-08	2144	48317816	110820847	54	1832											
LIMK1	3984	bcgsc.ca	37	7	73535525	73535525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	73535525	G	A	73535525	3	1	32	1	0	0	0	0	1	0	0	0	8808	1203	42	2	1900	2	LIMK1	7	73535525	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	25217709	73535525	85603138	55	1833											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	103629656	103629656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	103629656	C	T	103629656	3	4	32	1	0	0	0	0	1	0	0	0	13233	594	21	2	10494	2	RELN	7	103629656	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	30094131	103629656	55509007	56	1834											
CNOT4	4850	hgsc.bcm.edu;bcgsc.ca	37	7	135080545	135080545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	135080545	A	G	135080545	3	3	32	1	0	0	0	0	1	0	0	0	3623	275	10	3	1075	3	CNOT4	7	135080545	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	31450889	135080545	24058118	57	1835											
KIAA1549	57670	broad.mit.edu;ucsc.edu	37	7	138602635	138602635	+	Silent	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	138602635	C	T	138602635	2	4	32	1	0	0	0	0	0	0	0	1	8251	523	19	1		1	KIAA1549	7	138602635	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	3522090	138602635	20536028	58	1836											
POLB	5423	broad.mit.edu;bcgsc.ca	37	8	42213041	42213041	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	42213041	A	-	42213041	7	5	32	1	0	1	0	1	0	0	0	0	12196	243	9	0	404	0	POLB	8	42213041	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08		42213041	104150981	59	1837											
CHD7	55636	hgsc.bcm.edu	37	8	61761115	61761115	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	61761115	A	C	61761115	3	2	32	1	0	0	0	0	1	0	0	0	3332	246	9	5	5342	5	CHD7	8	61761115	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	19548074	61761115	84602907	60	1838											
TRPA1	8989	hgsc.bcm.edu	37	8	72950286	72950286	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	72950286	A	C	72950286	3	2	32	1	0	0	0	0	1	0	0	0	16589	130	5	5	1074	5	TRPA1	8	72950286	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	11189171	72950286	73413736	61	1839											
HAS2	3037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	122641473	122641473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	122641473	A	T	122641473	3	4	32	1	0	0	0	0	1	0	0	0	6969	359	13	5	1562	5	HAS2	8	122641473	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	49691187	122641473	23722549	62	1840											
ZBTB43	23099	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	129595385	129595385	+	Silent	SNP	G	G	T	rs34266321	byfrequency;alternate_allele	TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	129595385	G	T	129595385	2	4	32	1	0	0	0	0	0	0	0	1	17556	1132	40	4		4	ZBTB43	9	129595385	Silent	SNP	G	TCGA-A4-7585-01A-11D-2136-08		129595385	11618046	63	1841											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137734002	137734002	+	Splice_Site	SNP	G	G	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	137734002	G	C	137734002	5	2	32	1	0	0	0	0	0	0	1	0	3698	956	33	4	5632	4	COL5A1	9	137734002	Splice_Site	SNP	G	TCGA-A4-7585-01A-11D-2136-08	8138617	137734002	3479429	64	1842											
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103898442	103898442	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	103898442	A	-	103898442	7	5	32	1	0	1	0	1	0	0	0	0	12420	130	5	0	419	0	PPRC1	10	103898442	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08		103898442	31636305	65	1843											
HTRA1	5654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124273843	124273843	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	124273843	A	T	124273843	3	4	32	1	0	0	0	0	1	0	0	0	7460	333	12	5	1445	5	HTRA1	10	124273843	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	20375401	124273843	11260904	66	1844											
FAR1	84188	hgsc.bcm.edu	37	11	13743391	13743391	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	13743391	C	G	13743391	3	3	32	1	0	0	0	0	1	0	0	0	5681	506	18	4	1276	4	FAR1	11	13743391	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08		13743391	121263125	67	1845											
ARAP1	116985	broad.mit.edu	37	11	72399555	72399555	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	72399555	T	-	72399555	7	5	32	1	0	1	0	1	0	0	0	0	838	1406	49	0	357	0	ARAP1	11	72399555	Frame_Shift_Del	DEL	T	TCGA-A4-7585-01A-11D-2136-08	58656164	72399555	62606961	68	1846											
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	120980039	120980039	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	120980039	A	-	120980039	7	5	32	1	0	1	0	1	0	0	0	0	15759	233	9	0	328	0	TECTA	11	120980039	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08	48580484	120980039	14026477	69	1847											
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41327590	41327590	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	41327590	A	C	41327590	3	2	32	1	0	0	0	0	1	0	0	0	3642	130	5	5	925	5	CNTN1	12	41327590	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08		41327590	92524305	70	1848											
PDZRN4	29951	hgsc.bcm.edu	37	12	41582619	41582619	+	Missense_Mutation	SNP	G	G	A	rs74955204		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	41582619	G	A	41582619	3	1	32	1	0	0	0	0	1	0	0	0	11717	1232	43	2	364	2	PDZRN4	12	41582619	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	255029	41582619	92269276	71	1849											
KRT77	374454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53097170	53097170	+	Silent	SNP	G	G	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	53097170	G	T	53097170	2	4	32	1	0	0	0	0	0	0	0	1	8497	1086	38	4		4	KRT77	12	53097170	Silent	SNP	G	TCGA-A4-7585-01A-11D-2136-08	11514551	53097170	80754725	72	1850											
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57499083	57499083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	57499083	C	A	57499083	3	1	32	1	0	0	0	0	1	0	0	0	15282	912	32	4	1747	4	STAT6	12	57499083	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	4401913	57499083	76352812	73	1851											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120599294	120599294	+	Silent	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	120599294	C	T	120599294	2	4	32	1	0	0	0	0	0	0	0	1	6306	695	24	2		2	GCN1L1	12	120599294	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	63100211	120599294	13252601	74	1852											
MYO16	23026	hgsc.bcm.edu	37	13	109793009	109793009	+	Silent	SNP	C	C	T	rs141423536		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	109793009	C	T	109793009	2	4	32	1	0	0	0	0	0	0	0	1	10071	506	18	2		2	MYO16	13	109793009	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08		109793009	5376869	75	1853											
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35871629	35871629	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	35871629	A	T	35871629	3	4	32	1	0	0	0	0	1	0	0	0	10384	275	10	5	84	5	NFKBIA	14	35871629	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08		35871629	71477911	76	1854											
SLC39A9	55334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69866098	69866098	+	Silent	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	69866098	C	T	69866098	2	4	32	1	0	0	0	0	0	0	0	1	14638	825	29	2		2	SLC39A9	14	69866098	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	33994469	69866098	37483442	77	1855											
ATP10A	57194	broad.mit.edu	37	15	25953155	25953155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	25953155	G	A	25953155	3	1	32	1	0	0	0	0	1	0	0	0	1116	1203	42	2	1996	2	ATP10A	15	25953155	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08		25953155	76578237	78	1856											
SLC28A2	9153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45561728	45561728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	45561728	A	C	45561728	3	2	32	1	0	0	0	0	1	0	0	0	14545	333	12	5	1611	5	SLC28A2	15	45561728	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	19608573	45561728	56969664	79	1857											
MTFMT	123263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65295424	65295424	+	Silent	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	65295424	A	C	65295424	2	2	32	1	0	0	0	0	0	0	0	1	9931	117	5	5		5	MTFMT	15	65295424	Silent	SNP	A	TCGA-A4-7585-01A-11D-2136-08	19733696	65295424	37235968	80	1858											
C15orf27	123591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	76484312	76484312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	76484312	G	A	76484312	3	1	32	1	0	0	0	0	1	0	0	0	1790	1291	45	2	802	2	C15orf27	15	76484312	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	11188888	76484312	26047080	81	1859											
ANPEP	290	broad.mit.edu	37	15	90349269	90349269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	90349269	G	C	90349269	3	2	32	1	0	0	0	0	1	0	0	0	710	1049	37	4	2437	4	ANPEP	15	90349269	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	13864957	90349269	12182123	82	1860											
CIITA	4261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	10992818	10992818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	10992818	T	C	10992818	3	2	32	1	0	0	0	0	1	0	0	0	3430	1464	51	3	413	3	CIITA	16	10992818	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08		10992818	79361935	83	1861											
ABCC11	85320	hgsc.bcm.edu;broad.mit.edu	37	16	48230229	48230229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	48230229	G	A	48230229	3	1	32	1	0	0	0	0	1	0	0	0	51	1116	39	1	1882	1	ABCC11	16	48230229	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	37237411	48230229	42124524	84	1862											
GAN	8139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81411103	81411103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	81411103	C	T	81411103	3	4	32	1	0	0	0	0	1	0	0	0	6239	884	31	1	1738	1	GAN	16	81411103	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	33180874	81411103	8943650	85	1863											
HSDL1	83693	hgsc.bcm.edu;broad.mit.edu	37	16	84158328	84158328	+	Silent	SNP	A	A	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	84158328	A	C	84158328	2	2	32	1	0	0	0	0	0	0	0	1	7400	1	1	5		5	HSDL1	16	84158328	Silent	SNP	A	TCGA-A4-7585-01A-11D-2136-08	2747225	84158328	6196425	86	1864											
NLE1	54475	broad.mit.edu	37	17	33464163	33464163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	33464163	G	A	33464163	3	1	32	1	0	0	0	0	1	0	0	0	10467	1086	38	1	800	1	NLE1	17	33464163	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08		33464163	47731047	87	1865											
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39726126	39726126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	39726126	C	A	39726126	3	1	32	1	0	0	0	0	1	0	0	0	8508	912	32	4	1024	4	KRT9	17	39726126	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	6261963	39726126	41469084	88	1866											
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48692731	48692732	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	48692732	GC	-	48692731	7	5	32	1	0	1	0	1	0	0	0	0	2546	1319	46	0	5142	0	CACNA1G	17	48692731	Frame_Shift_Del	DEL	GC	TCGA-A4-7585-01A-11D-2136-08	8966605	48692731	32502479	89	1867											
PPM1D	8493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58740446	58740446	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	58740446	G	T	58740446	4	4	32	1	0	0	0	0	0	1	0	0	12347	943	33	4	1373	4	PPM1D	17	58740446	Nonsense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	10047715	58740446	22454764	90	1868											
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	17	66928478	66928478	+	Missense_Mutation	SNP	T	T	C	rs149928780		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	66928478	T	C	66928478	3	2	32	1	0	0	0	0	1	0	0	0	38	1608	56	3	4129	3	ABCA8	17	66928478	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	8188032	66928478	14266732	91	1869											
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67304486	67304486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	67304486	C	G	67304486	3	3	32	1	0	0	0	0	1	0	0	0	35	739	26	4	4575	4	ABCA5	17	67304486	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	376008	67304486	13890724	92	1870											
TNRC6C	57690	broad.mit.edu	37	17	76046980	76046980	+	Frame_Shift_Del	DEL	A	A	-	rs71717398		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	76046980	A	-	76046980	7	5	32	1	0	1	0	1	0	0	0	0	16354	247	9	0	1839	0	TNRC6C	17	76046980	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08	8742494	76046980	5148230	93	1871											
GAA	2548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	78085893	78085894	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	78085894	CC	-	78085893	7	5	32	1	0	1	0	1	0	0	0	0	6154	855	30	0	1790	0	GAA	17	78085893	Frame_Shift_Del	DEL	CC	TCGA-A4-7585-01A-11D-2136-08	2038913	78085893	3109317	94	1872											
CCDC57	284001	hgsc.bcm.edu	37	17	80115741	80115741	+	Silent	SNP	C	C	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	80115741	C	T	80115741	2	4	32	1	0	0	0	0	0	0	0	1	2829	796	28	2		2	CCDC57	17	80115741	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	2029848	80115741	1079469	95	1873											
PTPRS	5802	broad.mit.edu;bcgsc.ca	37	19	5231542	5231542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	5231542	T	A	5231542	3	1	32	1	0	0	0	0	1	0	0	0	12824	1783	62	5	4012	5	PTPRS	19	5231542	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08		5231542	53897441	96	1874											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	23926507	23926507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	23926507	C	G	23926507	3	3	32	1	0	0	0	0	1	0	0	0	18100	912	32	4	96	4	ZNF681	19	23926507	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	18694965	23926507	35202476	97	1875											
SUPT5H	6829	hgsc.bcm.edu	37	19	39960028	39960028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	39960028	A	G	39960028	3	3	32	1	0	0	0	0	1	0	0	0	15411	304	11	3	1422	3	SUPT5H	19	39960028	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	16033521	39960028	19168955	98	1876											
POU2F2	5452	hgsc.bcm.edu	37	19	42599440	42599440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	42599440	T	C	42599440	3	2	32	1	0	0	0	0	1	0	0	0	12279	1406	49	3	326	3	POU2F2	19	42599440	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	2639412	42599440	16529543	99	1877											
SLC23A2	9962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	4855238	4855238	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	T	4855238	A	T	4855238	3	4	32	1	0	0	0	0	1	0	0	0	14476	188	7	5	1055	5	SLC23A2	20	4855238	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08		4855238	58170282	100	1878											
BFSP1	631	hgsc.bcm.edu	37	20	17511868	17511869	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	AA	17511869	GC	AA	17511868	3	1	32	1	0	0	0	0	1	0	0	0	1415	971	34	2	1922	2	BFSP1	20	17511868	Missense_Mutation	DNP	GC	TCGA-A4-7585-01A-11D-2136-08	12656630	17511868	45513652	101	1879											
ATP9A	10079	hgsc.bcm.edu	37	20	50221537	50221537	+	Silent	SNP	C	C	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	50221537	C	G	50221537	2	3	32	1	0	0	0	0	0	0	0	1	1198	755	27	4		4	ATP9A	20	50221537	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	32709669	50221537	12803983	102	1880											
ATP9A	10079	hgsc.bcm.edu	37	20	50224072	50224072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	50224072	A	G	50224072	3	3	32	1	0	0	0	0	1	0	0	0	1198	420	15	3	358	3	ATP9A	20	50224072	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	2535	50224072	12801448	103	1881											
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35239577	35239577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	35239577	C	A	35239577	3	1	32	1	0	0	0	0	1	0	0	0	7933	913	32	4	4247	4	ITSN1	21	35239577	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08		35239577	12890318	104	1882											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26423002	26423002	+	Silent	SNP	C	C	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	26423002	C	G	26423002	2	3	32	1	0	0	0	0	0	0	0	1	10073	900	32	4		4	MYO18B	22	26423002	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08		26423002	24881564	105	1883											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46653660	46653660	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	46653660	T	G	46653660	3	3	32	1	0	0	0	0	1	0	0	0	11977	1812	63	5	1205	5	PKDREJ	22	46653660	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	20230658	46653660	4650906	106	1884											
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	23411958	23411959	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	23411959	-	G	23411958	7	5	32	1	0	1	1	0	0	0	0	0	12742	1493	52	0	2333	0	PTCHD1	23	23411958	Frame_Shift_Ins	INS	-	TCGA-A4-7585-01A-11D-2136-08		23411958	131858602	107	1885											
MAGEB4	4115	hgsc.bcm.edu	37	X	30260477	30260477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	30260477	G	C	30260477	3	2	32	1	0	0	0	0	1	0	0	0	9185	1377	48	4	227	4	MAGEB4	23	30260477	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	6848519	30260477	125010083	108	1886											
SMC1A	8243	broad.mit.edu;bcgsc.ca	37	X	53442034	53442036	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	-	53442036	ATC	-	53442034	7	5	32	1	0	1	0	1	0	0	0	0	14794	333	12	0	3603	0	SMC1A	23	53442034	In_Frame_Del	DEL	ATC	TCGA-A4-7585-01A-11D-2136-08	23181557	53442034	101828526	109	1887											
DACH2	117154	hgsc.bcm.edu	37	X	86087132	86087132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	G	86087132	A	G	86087132	3	3	32	1	0	0	0	0	1	0	0	0	4223	101	4	3	1829	3	DACH2	23	86087132	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	32645098	86087132	69183428	110	1888											
ARHGEF6	9459	broad.mit.edu	37	X	135754263	135754263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	C	135754263	G	C	135754263	3	2	32	1	0	0	0	0	1	0	0	0	910	1174	41	4	291	4	ARHGEF6	23	135754263	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	49667131	135754263	19516297	111	1889											
FMR1	2332	hgsc.bcm.edu;bcgsc.ca	37	X	147011651	147011651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	A	147011651	T	A	147011651	3	1	32	1	0	0	0	0	1	0	0	0	5967	1435	50	5	544	5	FMR1	23	147011651	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	11257388	147011651	8258909	112	1890											
TMEM200B	399474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	29447533	29447533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	29447533	G	A	29447533	3	1	33	1	0	0	0	0	1	0	0	0	16136	1000	35	2	119	2	TMEM200B	1	29447533	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08		29447533	219803088	1	1891											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94548962	94548962	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	94548962	G	A	94548962	2	1	33	1	0	0	0	0	0	0	0	1	34	1280	45	2		2	ABCA4	1	94548962	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08	65101429	94548962	154701659	2	1892											
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114402065	114402065	+	Silent	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	114402065	A	G	114402065	2	3	33	1	0	0	0	0	0	0	0	1	12800	407	15	3		3	PTPN22	1	114402065	Silent	SNP	A	TCGA-A4-7732-01A-11D-2136-08	19853103	114402065	134848556	3	1893											
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152382377	152382391	+	In_Frame_Del	DEL	TCAGGGTTGCTCACT	TCAGGGTTGCTCACT	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TCAGGGTTGCTCACT	TCAGGGTTGCTCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	-	152382391	TCAGGGTTGCTCACT	-	152382377	7	5	33	1	0	1	0	1	0	0	0	0	3894	1551	54	0	310	0	CRNN	1	152382377	In_Frame_Del	DEL	TCAGGGTTGCTCACT	TCGA-A4-7732-01A-11D-2136-08	37980312	152382377	96868244	4	1894											
RPS6KC1	26750	hgsc.bcm.edu	37	1	213244385	213244385	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	213244385	T	C	213244385	5	2	33	1	0	0	0	0	0	0	1	0	13671	1652	57	3	149	3	RPS6KC1	1	213244385	Splice_Site	SNP	T	TCGA-A4-7732-01A-11D-2136-08	60862008	213244385	36006236	5	1895											
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233134020	233134020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	233134020	G	A	233134020	3	1	33	1	0	0	0	0	1	0	0	0	11599	1174	41	2	657	2	PCNXL2	1	233134020	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	19889635	233134020	16116601	6	1896											
PCNXL2	80003	hgsc.bcm.edu	37	1	233225880	233225880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	233225880	T	C	233225880	3	2	33	1	0	0	0	0	1	0	0	0	11599	1551	54	3	2458	3	PCNXL2	1	233225880	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	91860	233225880	16024741	7	1897											
PREB	10113	bcgsc.ca	37	2	27355508	27355521	+	Frame_Shift_Del	DEL	TGGGTCCATTTTCT	TGGGTCCATTTTCT	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TGGGTCCATTTTCT	TGGGTCCATTTTCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	-	27355521	TGGGTCCATTTTCT	-	27355508	7	5	33	1	0	1	0	1	0	0	0	0	12480	1696	59	0	558	0	PREB	2	27355508	Frame_Shift_Del	DEL	TGGGTCCATTTTCT	TCGA-A4-7732-01A-11D-2136-08		27355508	215843865	8	1898											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	61454345	61454345	+	Silent	SNP	A	A	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	61454345	A	C	61454345	2	2	33	1	0	0	0	0	0	0	0	1	17077	117	5	5		5	USP34	2	61454345	Silent	SNP	A	TCGA-A4-7732-01A-11D-2136-08	34098837	61454345	181745028	9	1899											
NCAPH	23397	bcgsc.ca	37	2	97017653	97017654	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	TT	97017654	GA	TT	97017653	3	4	33	1	0	0	0	0	1	0	0	0	10216	1174	41	4	831	4	NCAPH	2	97017653	Missense_Mutation	DNP	GA	TCGA-A4-7732-01A-11D-2136-08	35563308	97017653	146181720	10	1900	26	2									
NCAPH	23397	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	97017659	97017669	+	Frame_Shift_Del	DEL	AGAAGTGAACT	AGAAGTGAACT	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	AGAAGTGAACT	AGAAGTGAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	-	97017669	AGAAGTGAACT	-	97017659	7	5	33	1	0	1	0	1	0	0	0	0	10216	180	7	0	837	0	NCAPH	2	97017659	Frame_Shift_Del	DEL	AGAAGTGAACT	TCGA-A4-7732-01A-11D-2136-08	6	97017659	146181714	11	1901	26	2									
IL1R1	3554	hgsc.bcm.edu	37	2	102792833	102792833	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	102792833	G	C	102792833	3	2	33	1	0	0	0	0	1	0	0	0	7665	1291	45	4	1362	4	IL1R1	2	102792833	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	5775174	102792833	140406540	12	1902											
HNMT	3176	hgsc.bcm.edu;broad.mit.edu	37	2	138771361	138771361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	138771361	C	A	138771361	3	1	33	1	0	0	0	0	1	0	0	0	7262	477	17	4	780	4	HNMT	2	138771361	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	35978528	138771361	104428012	13	1903											
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166210795	166210795	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	166210795	A	C	166210795	3	2	33	1	0	0	0	0	1	0	0	0	13929	333	12	5	3171	5	SCN2A	2	166210795	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	27439434	166210795	76988578	14	1904											
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178936278	178936278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	178936278	G	T	178936278	3	4	33	1	0	0	0	0	1	0	0	0	11638	1145	40	4	1994	4	PDE11A	2	178936278	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	12725483	178936278	64263095	15	1905											
MARS2	92935	hgsc.bcm.edu;broad.mit.edu	37	2	198571900	198571900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	198571900	C	T	198571900	3	4	33	1	0	0	0	0	1	0	0	0	9324	594	21	2	1773	2	MARS2	2	198571900	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	19635622	198571900	44627473	16	1906											
PRKCD	5580	ucsc.edu	37	3	53212505	53212505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	53212505	G	A	53212505	3	1	33	1	0	0	0	0	1	0	0	0	12519	1203	42	2	69	2	PRKCD	3	53212505	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08		53212505	144809925	17	1907											
PARP9	83666	hgsc.bcm.edu	37	3	122259457	122259457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	122259457	T	C	122259457	3	2	33	1	0	0	0	0	1	0	0	0	11473	1580	55	3	901	3	PARP9	3	122259457	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	69046952	122259457	75762973	18	1908											
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	197427622	197427622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	197427622	C	G	197427622	3	3	33	1	0	0	0	0	1	0	0	0	8169	681	24	4	1900	4	KIAA0226	3	197427622	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	75168165	197427622	594808	19	1909											
UGT2A3	79799	broad.mit.edu	37	4	69817176	69817177	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	AA	69817177	-	AA	69817176	7	5	33	1	0	1	1	0	0	0	0	0	16967	1403	49	0	1304	0	UGT2A3	4	69817176	Frame_Shift_Ins	INS	-	TCGA-A4-7732-01A-11D-2136-08		69817176	121337100	20	1910											
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	14387672	14387672	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	-	14387672	T	-	14387672	7	5	33	1	0	1	0	1	0	0	0	0	16564	1538	54	0	3782	0	TRIO	5	14387672	Frame_Shift_Del	DEL	T	TCGA-A4-7732-01A-11D-2136-08		14387672	166527588	21	1911											
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140798373	140798373	+	Missense_Mutation	SNP	C	C	G	rs200530054	alternate_allele	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	140798373	C	G	140798373	3	3	33	1	0	0	0	0	1	0	0	0	11575	536	19	4	949	4	PCDHGB7	5	140798373	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	126410701	140798373	40116887	22	1912											
ARHGEF37	389337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149006787	149006787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	149006787	A	G	149006787	3	3	33	1	0	0	0	0	1	0	0	0	906	43	2	3	1651	3	ARHGEF37	5	149006787	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	8208414	149006787	31908473	23	1913											
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27222771	27222771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	27222771	C	T	27222771	3	4	33	1	0	0	0	0	1	0	0	0	12626	478	17	2	1379	2	PRSS16	6	27222771	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		27222771	143892296	24	1914											
HIST1H1B	3009	broad.mit.edu	37	6	27835118	27835118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	27835118	C	A	27835118	3	1	33	1	0	0	0	0	1	0	0	0	7130	797	28	4	494	4	HIST1H1B	6	27835118	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	612347	27835118	143279949	25	1915											
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31779708	31779708	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	31779708	G	A	31779708	2	1	33	1	0	0	0	0	0	0	0	1	7417	1306	46	2		2	HSPA1L	6	31779708	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08	3944590	31779708	139335359	26	1916											
CD109	135228	hgsc.bcm.edu	37	6	74524713	74524713	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	74524713	G	C	74524713	3	2	33	1	0	0	0	0	1	0	0	0	2965	1377	48	4	3896	4	CD109	6	74524713	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	42745005	74524713	96590354	27	1917											
SP8	221833	hgsc.bcm.edu	37	7	20824445	20824445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	20824445	C	T	20824445	3	4	33	1	0	0	0	0	1	0	0	0	14983	739	26	2	539	2	SP8	7	20824445	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		20824445	138314218	28	1918											
WBSCR17	64409	broad.mit.edu;bcgsc.ca	37	7	71142235	71142235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	71142235	G	A	71142235	3	1	33	1	0	0	0	0	1	0	0	0	17276	1232	43	2	1478	2	WBSCR17	7	71142235	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	50317790	71142235	87996428	29	1919											
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103029857	103029857	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	103029857	G	A	103029857	2	1	33	1	0	0	0	0	0	0	0	1	14533	1335	47	2		2	SLC26A5	7	103029857	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08	31887622	103029857	56108806	30	1920											
PODXL	5420	hgsc.bcm.edu	37	7	131241089	131241089	+	Silent	SNP	C	C	T	rs116656523		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	131241089	C	T	131241089	2	4	33	1	0	0	0	0	0	0	0	1	12187	697	25	2		2	PODXL	7	131241089	Silent	SNP	C	TCGA-A4-7732-01A-11D-2136-08	28211232	131241089	27897574	31	1921											
ZNF707	286075	broad.mit.edu	37	8	144776267	144776267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	144776267	G	A	144776267	3	1	33	1	0	0	0	0	1	0	0	0	18123	1087	38	1	697	1	ZNF707	8	144776267	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08		144776267	1587755	32	1922											
MAPK15	225689	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144801161	144801161	+	Splice_Site	SNP	A	A	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	144801161	A	T	144801161	5	4	33	1	0	0	0	0	0	0	1	0	9284	202	7	5	438	5	MAPK15	8	144801161	Splice_Site	SNP	A	TCGA-A4-7732-01A-11D-2136-08	24894	144801161	1562861	33	1923											
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4585458	4585458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	4585458	T	C	4585458	3	2	33	1	0	0	0	0	1	0	0	0	14444	1609	56	3	1521	3	SLC1A1	9	4585458	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08		4585458	136627973	34	1924											
APTX	54840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32988092	32988092	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	32988092	T	A	32988092	4	1	33	1	0	0	0	0	0	1	0	0	820	1821	63	5	892	5	APTX	9	32988092	Nonsense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	28402634	32988092	108225339	35	1925											
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	98268787	98268787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	98268787	C	T	98268787	3	4	33	1	0	0	0	0	1	0	0	0	12740	739	26	2	4135	2	PTCH1	9	98268787	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	65280695	98268787	42944644	36	1926											
ZMYND11	10771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	287963	287963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	287963	A	G	287963	3	3	33	1	0	0	0	0	1	0	0	0	17718	381	14	3	868	3	ZMYND11	10	287963	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08		287963	135246784	37	1927											
PLXDC2	84898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	20357165	20357165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	20357165	G	A	20357165	3	1	33	1	0	0	0	0	1	0	0	0	12125	1116	39	1	552	1	PLXDC2	10	20357165	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	20069202	20357165	115177582	38	1928											
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103900396	103900396	+	Missense_Mutation	SNP	G	G	A	rs17847386		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	103900396	G	A	103900396	3	1	33	1	0	0	0	0	1	0	0	0	12420	1145	40	1	2149	1	PPRC1	10	103900396	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	83543231	103900396	31634351	39	1929											
COPB1	1315	hgsc.bcm.edu	37	11	14510132	14510132	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	14510132	T	C	14510132	5	2	33	1	0	0	0	0	0	0	1	0	3730	1536	53	3	2324	3	COPB1	11	14510132	Splice_Site	SNP	T	TCGA-A4-7732-01A-11D-2136-08		14510132	120496384	40	1930											
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26743059	26743059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	26743059	A	G	26743059	3	3	33	1	0	0	0	0	1	0	0	0	14677	188	7	3	1713	3	SLC5A12	11	26743059	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	12232927	26743059	108263457	41	1931											
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57177469	57177469	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	57177469	T	G	57177469	3	3	33	1	0	0	0	0	1	0	0	0	14647	1464	51	5	301	5	SLC43A3	11	57177469	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	30434410	57177469	77829047	42	1932											
USP28	57646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113705056	113705056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	113705056	G	C	113705056	3	2	33	1	0	0	0	0	1	0	0	0	17070	956	33	4	2777	4	USP28	11	113705056	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	56527587	113705056	21301460	43	1933											
SIDT2	51092	broad.mit.edu;bcgsc.ca	37	11	117063308	117063308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	117063308	G	A	117063308	3	1	33	1	0	0	0	0	1	0	0	0	14316	1087	38	1	2082	1	SIDT2	11	117063308	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	3358252	117063308	17943208	44	1934											
DPAGT1	1798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118969112	118969112	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	118969112	C	T	118969112	5	4	33	1	0	0	0	0	0	0	1	0	4712	521	18	2	517	2	DPAGT1	11	118969112	Splice_Site	SNP	C	TCGA-A4-7732-01A-11D-2136-08	1905804	118969112	16037404	45	1935											
TFCP2	7024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51495806	51495806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	51495806	C	T	51495806	3	4	33	1	0	0	0	0	1	0	0	0	15807	739	26	2	465	2	TFCP2	12	51495806	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		51495806	82356089	46	1936											
SLC39A5	283375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56626598	56626598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	56626598	A	G	56626598	3	3	33	1	0	0	0	0	1	0	0	0	14634	275	10	3	419	3	SLC39A5	12	56626598	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	5130792	56626598	77225297	47	1937											
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57864354	57864354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	57864354	C	T	57864354	3	4	33	1	0	0	0	0	1	0	0	0	6444	875	31	1	1873	1	GLI1	12	57864354	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	1237756	57864354	75987541	48	1938											
CCDC41	51134	hgsc.bcm.edu	37	12	94769760	94769760	+	Missense_Mutation	SNP	G	G	A	rs79068264		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	94769760	G	A	94769760	3	1	33	1	0	0	0	0	1	0	0	0	2815	1145	40	1	1310	1	CCDC41	12	94769760	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	36905406	94769760	39082135	49	1939											
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41894809	41894809	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	41894809	A	T	41894809	3	4	33	1	0	0	0	0	1	0	0	0	10126	217	8	5	265	5	NAA16	13	41894809	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08		41894809	73275069	50	1940											
SEC23A	10484	broad.mit.edu;bcgsc.ca	37	14	39514526	39514526	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	-	39514526	A	-	39514526	7	5	33	1	0	1	0	1	0	0	0	0	14004	359	13	0	577	0	SEC23A	14	39514526	Frame_Shift_Del	DEL	A	TCGA-A4-7732-01A-11D-2136-08		39514526	67835014	51	1941											
MDGA2	161357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	47351354	47351354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	47351354	G	T	47351354	3	4	33	1	0	0	0	0	1	0	0	0	9414	1377	48	4	796	4	MDGA2	14	47351354	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	7836828	47351354	59998186	52	1942											
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu	37	14	90528673	90528673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	90528673	G	A	90528673	3	1	33	1	0	0	0	0	1	0	0	0	8068	1175	41	2	126	2	KCNK13	14	90528673	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	43177319	90528673	16820867	53	1943											
DYNC1H1	1778	broad.mit.edu	37	14	102483550	102483550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	102483550	G	T	102483550	3	4	33	1	0	0	0	0	1	0	0	0	4843	1212	42	4	8128	4	DYNC1H1	14	102483550	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	11954877	102483550	4865990	54	1944											
TECPR2	9895	broad.mit.edu	37	14	102910132	102910132	+	Silent	SNP	G	G	A	rs202209194	alternate_allele	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	102910132	G	A	102910132	2	1	33	1	0	0	0	0	0	0	0	1	15756	1103	39	1		1	TECPR2	14	102910132	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08	426582	102910132	4439408	55	1945											
MAPKBP1	23005	ucsc.edu;bcgsc.ca	37	15	42117531	42117531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	42117531	G	A	42117531	3	1	33	1	0	0	0	0	1	0	0	0	9299	971	34	2	4564	2	MAPKBP1	15	42117531	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08		42117531	60413861	56	1946											
PKD1	5310	hgsc.bcm.edu;broad.mit.edu	37	16	2155927	2155927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	2155927	C	G	2155927	3	3	33	1	0	0	0	0	1	0	0	0	11970	652	23	4	5217	4	PKD1	16	2155927	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		2155927	88198826	57	1947											
PRSS21	10942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2868950	2868950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	2868950	G	T	2868950	3	4	33	1	0	0	0	0	1	0	0	0	12628	1232	43	4	544	4	PRSS21	16	2868950	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	713023	2868950	87485803	58	1948											
RRN3	54700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	15159184	15159184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	15159184	T	C	15159184	3	2	33	1	0	0	0	0	1	0	0	0	13697	1493	52	3	369	3	RRN3	16	15159184	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	12290234	15159184	75195569	59	1949											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	11772554	11772554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	11772554	C	T	11772554	3	4	33	1	0	0	0	0	1	0	0	0	4610	855	30	2	10239	2	DNAH9	17	11772554	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		11772554	69422656	60	1950											
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305911	39305911	+	Missense_Mutation	SNP	G	G	A	rs141058010		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	39305911	G	A	39305911	3	1	33	1	0	0	0	0	1	0	0	0	8561	1116	39	1	440	1	KRTAP4-5	17	39305911	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	27533357	39305911	41889299	61	1951											
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	73096278	73096278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	73096278	G	T	73096278	3	4	33	1	0	0	0	0	1	0	0	0	14424	1377	48	4	530	4	SLC16A5	17	73096278	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	33790367	73096278	8098932	62	1952											
FAM108A1	81926	hgsc.bcm.edu	37	19	1881550	1881550	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	1881550	G	A	1881550	2	1	33	1	0	0	0	0	0	0	0	1	5395	962	34	2		2	FAM108A1	19	1881550	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08		1881550	57247433	63	1953											
MUC16	94025	broad.mit.edu	37	19	9088433	9088433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	9088433	C	T	9088433	3	4	33	1	0	0	0	0	1	0	0	0	9980	797	28	2	40477	2	MUC16	19	9088433	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	7206883	9088433	50040550	64	1954											
ZNF439	90594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	11978986	11978986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	11978986	T	C	11978986	3	2	33	1	0	0	0	0	1	0	0	0	17923	1667	58	3	1112	3	ZNF439	19	11978986	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	2890553	11978986	47149997	65	1955											
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44680650	44680650	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	-	44680650	T	-	44680650	7	5	33	1	0	1	0	1	0	0	0	0	17792	1725	60	0	1303	0	ZNF226	19	44680650	Frame_Shift_Del	DEL	T	TCGA-A4-7732-01A-11D-2136-08	32701664	44680650	14448333	66	1956											
ZNF285	26974	hgsc.bcm.edu	37	19	44892065	44892065	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	44892065	A	C	44892065	3	2	33	1	0	0	0	0	1	0	0	0	17834	10	1	5	1434	5	ZNF285	19	44892065	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	211415	44892065	14236918	67	1957											
KPTN	11133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	47987312	47987312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	47987312	C	T	47987312	3	4	33	1	0	0	0	0	1	0	0	0	8444	652	23	1	1252	1	KPTN	19	47987312	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	3095247	47987312	11141671	68	1958											
SHANK1	50944	broad.mit.edu	37	19	51171508	51171508	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	-	51171508	C	-	51171508	7	5	33	1	0	1	0	1	0	0	0	0	14277	507	18	0	2784	0	SHANK1	19	51171508	Frame_Shift_Del	DEL	C	TCGA-A4-7732-01A-11D-2136-08	3184196	51171508	7957475	69	1959											
LILRB4	11006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55176288	55176288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	55176288	G	A	55176288	3	1	33	1	0	0	0	0	1	0	0	0	8800	1145	40	1	712	1	LILRB4	19	55176288	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	4004780	55176288	3952695	70	1960											
NLRP13	126204	hgsc.bcm.edu	37	19	56416341	56416341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	G	56416341	A	G	56416341	3	3	33	1	0	0	0	0	1	0	0	0	10482	188	7	3	560	3	NLRP13	19	56416341	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	1240053	56416341	2712642	71	1961											
MKKS	8195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	10385928	10385928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	10385928	C	A	10385928	3	1	33	1	0	0	0	0	1	0	0	0	9607	593	21	4	36	4	MKKS	20	10385928	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		10385928	52639592	72	1962											
LAMA5	3911	hgsc.bcm.edu	37	20	60891744	60891744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	60891744	T	C	60891744	3	2	33	1	0	0	0	0	1	0	0	0	8616	1580	55	3	3444	3	LAMA5	20	60891744	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	50505816	60891744	2133776	73	1963											
GYG2	8908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2772026	2772026	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	A	2772026	T	A	2772026	3	1	33	1	0	0	0	0	1	0	0	0	6913	1435	50	5	262	5	GYG2	23	2772026	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08		2772026	152498534	74	1964											
SYP	6855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	49050637	49050638	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	-	49050638	TG	-	49050637	7	5	33	1	0	1	0	1	0	0	0	0	15473	1821	63	0	544	0	SYP	23	49050637	Frame_Shift_Del	DEL	TG	TCGA-A4-7732-01A-11D-2136-08	46278611	49050637	106219923	75	1965	27	2									
SYP	6855	bcgsc.ca	37	X	49050639	49050639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	C	49050639	T	C	49050639	3	2	33	1	0	0	0	0	1	0	0	0	15473	1725	60	3	546	3	SYP	23	49050639	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	2	49050639	106219921	76	1966	27	2									
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71829514	71829514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	T	71829514	C	T	71829514	3	4	33	1	0	0	0	0	1	0	0	0	11850	565	20	2	1145	2	PHKA1	23	71829514	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	22778875	71829514	83441046	77	1967											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19181066	19181066	+	Missense_Mutation	SNP	C	C	T	rs201197024		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	19181066	C	T	19181066	3	4	34	1	0	0	0	0	1	0	0	0	15575	768	27	1	1637	1	TAS1R2	1	19181066	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08		19181066	230069555	1	1968											
SLC35D1	23169	hgsc.bcm.edu	37	1	67515474	67515474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	67515474	A	G	67515474	3	3	34	1	0	0	0	0	1	0	0	0	14594	391	14	3	571	3	SLC35D1	1	67515474	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	48334408	67515474	181735147	2	1969											
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	91406116	91406116	+	Silent	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	91406116	G	A	91406116	2	1	34	1	0	0	0	0	0	0	0	1	18072	1281	45	2		2	ZNF644	1	91406116	Silent	SNP	G	TCGA-A4-7734-01A-11D-2136-08	23890642	91406116	157844505	3	1970											
KCND3	3752	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	112524716	112524716	+	Silent	SNP	C	C	T	rs35131566	byfrequency;alternate_allele	TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	112524716	C	T	112524716	2	4	34	1	0	0	0	0	0	0	0	1	8027	639	23	1		1	KCND3	1	112524716	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	21118600	112524716	136725905	4	1971											
YY1AP1	55249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155638446	155638446	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	155638446	A	T	155638446	3	4	34	1	0	0	0	0	1	0	0	0	17520	217	8	5	1413	5	YY1AP1	1	155638446	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	43113730	155638446	93612175	5	1972											
PVRL4	81607	hgsc.bcm.edu;bcgsc.ca	37	1	161049405	161049405	+	Silent	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	161049405	C	T	161049405	2	4	34	1	0	0	0	0	0	0	0	1	12855	680	24	2		2	PVRL4	1	161049405	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	5410959	161049405	88201216	6	1973											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21251317	21251317	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	21251317	G	A	21251317	4	1	34	1	0	0	0	0	0	1	0	0	785	1386	48	2	12048	2	APOB	2	21251317	Nonsense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08		21251317	221948056	7	1974											
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	173352903	173352903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	173352903	C	A	173352903	3	1	34	1	0	0	0	0	1	0	0	0	7887	711	25	4	2526	4	ITGA6	2	173352903	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08	152101586	173352903	69846470	8	1975											
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	180310448	180310448	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	-	180310448	T	-	180310448	7	5	34	1	0	1	0	1	0	0	0	0	17889	1722	60	0	503	0	ZNF385B	2	180310448	Frame_Shift_Del	DEL	T	TCGA-A4-7734-01A-11D-2136-08	6957545	180310448	62888925	9	1976											
OBSL1	23363	broad.mit.edu	37	2	220435527	220435528	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	220435528	-	C	220435527	7	5	34	1	0	1	1	0	0	0	0	0	10820	1087	38	0	5498	0	OBSL1	2	220435527	Frame_Shift_Ins	INS	-	TCGA-A4-7734-01A-11D-2136-08	40125079	220435527	22763846	10	1977											
TOP2B	7155	broad.mit.edu	37	3	25678710	25678710	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	-	25678710	T	-	25678710	7	5	34	1	0	1	0	1	0	0	0	0	16378	1609	56	0	4369	0	TOP2B	3	25678710	Frame_Shift_Del	DEL	T	TCGA-A4-7734-01A-11D-2136-08		25678710	172343720	11	1978											
NEK10	152110	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	27297798	27297799	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	AT	27297799	GA	AT	27297798	3	1	34	1	0	0	0	0	1	0	0	0	10329	1164	41	2	67	2	NEK10	3	27297798	Missense_Mutation	DNP	GA	TCGA-A4-7734-01A-11D-2136-08	1619088	27297798	170724632	12	1979											
HTR3D	200909	ucsc.edu	37	3	183756414	183756414	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	183756414	T	A	183756414	5	1	34	1	0	0	0	0	0	0	1	0	7454	1710	59	5	1333	5	HTR3D	3	183756414	Splice_Site	SNP	T	TCGA-A4-7734-01A-11D-2136-08	156458616	183756414	14266016	13	1980											
HERC5	51191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89410409	89410409	+	Silent	SNP	C	C	G	rs141289100	byfrequency;alternate_allele	TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	89410409	C	G	89410409	2	3	34	1	0	0	0	0	0	0	0	1	7068	813	29	4		4	HERC5	4	89410409	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08		89410409	101743867	14	1981											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126411930	126411930	+	Silent	SNP	C	C	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	126411930	C	A	126411930	2	1	34	1	0	0	0	0	0	0	0	1	5699	845	30	4		4	FAT4	4	126411930	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	37001521	126411930	64742346	15	1982											
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	6620336	6620336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	6620336	C	T	6620336	3	4	34	1	0	0	0	0	1	0	0	0	10685	797	28	2	1657	2	NSUN2	5	6620336	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08		6620336	174294924	16	1983											
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72378596	72378596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	72378596	A	C	72378596	3	2	34	1	0	0	0	0	1	0	0	0	5795	246	9	5	2283	5	FCHO2	5	72378596	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	65758260	72378596	108536664	17	1984											
AP3B1	8546	hgsc.bcm.edu	37	5	77406161	77406161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	77406161	T	C	77406161	3	2	34	1	0	0	0	0	1	0	0	0	744	1551	54	3	1049	3	AP3B1	5	77406161	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	5027565	77406161	103509099	18	1985											
SLC12A2	6558	hgsc.bcm.edu	37	5	127419881	127419881	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	127419881	A	C	127419881	3	2	34	1	0	0	0	0	1	0	0	0	14396	304	11	5	237	5	SLC12A2	5	127419881	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	50013720	127419881	53495379	19	1986											
HSPA4	3308	hgsc.bcm.edu	37	5	132425377	132425377	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	132425377	T	C	132425377	2	2	34	1	0	0	0	0	0	0	0	1	7419	1432	50	3		3	HSPA4	5	132425377	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08	5005496	132425377	48489883	20	1987											
CAMK2A	815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149644564	149644564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	149644564	C	G	149644564	3	3	34	1	0	0	0	0	1	0	0	0	2601	864	30	4	1365	4	CAMK2A	5	149644564	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08	17219187	149644564	31270696	21	1988											
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	17796913	17796913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	17796913	T	G	17796913	3	3	34	1	0	0	0	0	1	0	0	0	8281	1725	60	5	2581	5	KIF13A	6	17796913	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08		17796913	153318154	22	1989											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56463337	56463337	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	56463337	T	C	56463337	2	2	34	1	0	0	0	0	0	0	0	1	4785	1567	55	3		3	DST	6	56463337	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08	38666424	56463337	114651730	23	1990											
TYW1	55253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66514966	66514966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	66514966	G	T	66514966	3	4	34	1	0	0	0	0	1	0	0	0	16830	1348	47	4	1045	4	TYW1	7	66514966	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08		66514966	92623697	24	1991											
VPS37D	155382	broad.mit.edu	37	7	73083913	73083921	+	Frame_Shift_Del	DEL	GCGACTGGG	GCGACTGGG	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	GCGACTGGG	GCGACTGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	-	73083921	GCGACTGGG	-	73083913	7	5	34	1	0	1	0	1	0	0	0	0	17220	962	34	0	309	0	VPS37D	7	73083913	Frame_Shift_Del	DEL	GCGACTGGG	TCGA-A4-7734-01A-11D-2136-08	6568947	73083913	86054750	25	1992											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116423433	116423433	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	116423433	T	A	116423433	3	1	34	1	0	0	0	0	1	0	0	0	9492	1693	59	5	3832	5	MET	7	116423433	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	43339520	116423433	42715230	26	1993											
SPAM1	6677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	123599995	123599995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	123599995	T	A	123599995	3	1	34	1	0	0	0	0	1	0	0	0	14999	1609	56	5	1512	5	SPAM1	7	123599995	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	7176562	123599995	35538668	27	1994											
SHH	6469	hgsc.bcm.edu	37	7	155595634	155595634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	155595634	T	C	155595634	3	2	34	1	0	0	0	0	1	0	0	0	14292	1551	54	3	43	3	SHH	7	155595634	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	31995639	155595634	3543029	28	1995											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110420393	110420393	+	Silent	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	110420393	G	C	110420393	2	2	34	1	0	0	0	0	0	0	0	1	11979	1161	41	4		4	PKHD1L1	8	110420393	Silent	SNP	G	TCGA-A4-7734-01A-11D-2136-08		110420393	35943629	29	1996											
VPS28	51160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145651588	145651588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	145651588	G	T	145651588	3	4	34	1	0	0	0	0	1	0	0	0	17211	1000	35	4	770	4	VPS28	8	145651588	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	35231195	145651588	712434	30	1997											
CNTLN	54875	hgsc.bcm.edu	37	9	17394561	17394561	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	17394561	T	C	17394561	2	2	34	1	0	0	0	0	0	0	0	1	3641	1596	56	3		3	CNTLN	9	17394561	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08		17394561	123818870	31	1998											
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	72913102	72913102	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	72913102	G	C	72913102	3	2	34	1	0	0	0	0	1	0	0	0	14799	1058	37	4	1308	4	SMC5	9	72913102	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	55518541	72913102	68300329	32	1999											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79981712	79981712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	79981712	A	C	79981712	3	2	34	1	0	0	0	0	1	0	0	0	17201	333	12	5	8637	5	VPS13A	9	79981712	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	7068610	79981712	61231719	33	2000											
PDCL	5082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125582792	125582792	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	125582792	G	A	125582792	4	1	34	1	0	0	0	0	0	1	0	0	11633	1328	46	2	431	2	PDCL	9	125582792	Nonsense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	45601080	125582792	15630639	34	2001											
SLC2A8	29988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130167105	130167105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	130167105	A	G	130167105	3	3	34	1	0	0	0	0	1	0	0	0	14564	217	8	3	1015	3	SLC2A8	9	130167105	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	4584313	130167105	11046326	35	2002											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17127627	17127627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	17127627	T	G	17127627	3	3	34	1	0	0	0	0	1	0	0	0	4053	1606	56	5	9000	5	CUBN	10	17127627	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08		17127627	118407120	36	2003											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	63852307	63852307	+	Silent	SNP	C	C	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	63852307	C	A	63852307	2	1	34	1	0	0	0	0	0	0	0	1	922	643	23	4		4	ARID5B	10	63852307	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	46724680	63852307	71682440	37	2004											
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48181586	48181586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	48181586	T	A	48181586	3	1	34	1	0	0	0	0	1	0	0	0	12817	1490	52	5	3638	5	PTPRJ	11	48181586	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08		48181586	86824930	38	2005											
CAPN1	823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64974118	64974118	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	64974118	T	G	64974118	3	3	34	1	0	0	0	0	1	0	0	0	2624	1783	62	5	1584	5	CAPN1	11	64974118	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	16792532	64974118	70032398	39	2006											
RNF26	79102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119206410	119206410	+	Missense_Mutation	SNP	G	G	A	rs200033048		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	119206410	G	A	119206410	3	1	34	1	0	0	0	0	1	0	0	0	13499	971	34	2	580	2	RNF26	11	119206410	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	54232292	119206410	15800106	40	2007											
H2AFJ	55766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14927594	14927594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	14927594	C	G	14927594	3	3	34	1	0	0	0	0	1	0	0	0	6933	680	24	4	192	4	H2AFJ	12	14927594	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08		14927594	118924301	41	2008											
MRPS35	60488	hgsc.bcm.edu	37	12	27877051	27877051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	27877051	G	C	27877051	3	2	34	1	0	0	0	0	1	0	0	0	9851	1290	45	4	472	4	MRPS35	12	27877051	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	12949457	27877051	105974844	42	2009											
CPM	1368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	69326479	69326479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	69326479	T	A	69326479	3	1	34	1	0	0	0	0	1	0	0	0	3810	1580	55	5	1224	5	CPM	12	69326479	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	41449428	69326479	64525416	43	2010											
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	89744677	89744677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	89744677	A	G	89744677	3	3	34	1	0	0	0	0	1	0	0	0	4831	304	11	3	627	3	DUSP6	12	89744677	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	20418198	89744677	44107218	44	2011											
PRPF39	55015	hgsc.bcm.edu	37	14	45579918	45579918	+	Silent	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	45579918	A	G	45579918	2	3	34	1	0	0	0	0	0	0	0	1	12579	98	4	3		3	PRPF39	14	45579918	Silent	SNP	A	TCGA-A4-7734-01A-11D-2136-08		45579918	61769622	45	2012											
ABCD4	5826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74756774	74756774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	74756774	G	T	74756774	3	4	34	1	0	0	0	0	1	0	0	0	63	991	35	4	473	4	ABCD4	14	74756774	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	29176856	74756774	32592766	46	2013											
GABRG3	2567	hgsc.bcm.edu	37	15	27271931	27271931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	27271931	A	G	27271931	3	3	34	1	0	0	0	0	1	0	0	0	6180	449	16	3	243	3	GABRG3	15	27271931	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08		27271931	75259461	47	2014											
FSIP1	161835	hgsc.bcm.edu	37	15	40034075	40034075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	40034075	A	G	40034075	3	3	34	1	0	0	0	0	1	0	0	0	6081	72	3	3	1187	3	FSIP1	15	40034075	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	12762144	40034075	62497317	48	2015											
NEDD4	4734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	56208931	56208934	+	Frame_Shift_Del	DEL	CATG	CATG	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	CATG	CATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	-	56208934	CATG	-	56208931	7	5	34	1	0	1	0	1	0	0	0	0	10317	478	17	0	3960	0	NEDD4	15	56208931	Frame_Shift_Del	DEL	CATG	TCGA-A4-7734-01A-11D-2136-08	16174856	56208931	46322461	49	2016											
PPIB	5479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64454355	64454355	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	64454355	T	C	64454355	5	2	34	1	0	0	0	0	0	0	1	0	12329	1594	55	3	532	3	PPIB	15	64454355	Splice_Site	SNP	T	TCGA-A4-7734-01A-11D-2136-08	8245424	64454355	38077037	50	2017											
ULK3	25989	hgsc.bcm.edu	37	15	75132966	75132966	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	75132966	T	C	75132966	2	2	34	1	0	0	0	0	0	0	0	1	16989	1722	60	3		3	ULK3	15	75132966	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08	10678611	75132966	27398426	51	2018											
CORO1A	11151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30198546	30198547	+	Splice_Site	INS	-	-	GA	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	GA	30198547	-	GA	30198546	8	5	34	1	0	1	1	0	0	0	1	0	3755	1710	59	0	652	0	CORO1A	16	30198546	Splice_Site	INS	-	TCGA-A4-7734-01A-11D-2136-08		30198546	60156207	52	2019											
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57719830	57719830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	57719830	C	T	57719830	3	4	34	1	0	0	0	0	1	0	0	0	6727	855	30	2	1574	2	GPR97	16	57719830	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08	27521284	57719830	32634923	53	2020											
KIFC3	3801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57806198	57806198	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	57806198	T	C	57806198	2	2	34	1	0	0	0	0	0	0	0	1	8321	1509	53	3		3	KIFC3	16	57806198	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08	86368	57806198	32548555	54	2021											
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1370772	1370772	+	Splice_Site	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	1370772	A	C	1370772	5	2	34	1	0	0	0	0	0	0	1	0	10077	173	6	5	136	5	MYO1C	17	1370772	Splice_Site	SNP	A	TCGA-A4-7734-01A-11D-2136-08		1370772	79824438	55	2022											
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48818486	48818486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	48818486	T	C	48818486	3	2	34	1	0	0	0	0	1	0	0	0	9091	1464	51	3	244	3	LUC7L3	17	48818486	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	47447714	48818486	32376724	56	2023											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57724783	57724783	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	57724783	A	T	57724783	3	4	34	1	0	0	0	0	1	0	0	0	3568	43	2	5	285	5	CLTC	17	57724783	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	8906297	57724783	23470427	57	2024											
BAHCC1	57597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79425869	79425869	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	79425869	G	T	79425869	4	4	34	1	0	0	0	0	0	1	0	0	1296	1175	41	4	5388	4	BAHCC1	17	79425869	Nonsense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	21701086	79425869	1769341	58	2025											
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36606528	36606528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	36606528	C	G	36606528	3	3	34	1	0	0	0	0	1	0	0	0	15642	854	30	4	68	4	TBCB	19	36606528	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08		36606528	22522455	59	2026											
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42795453	42795453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	42795453	G	A	42795453	3	1	34	1	0	0	0	0	1	0	0	0	3426	971	34	2	2571	2	CIC	19	42795453	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	6188925	42795453	16333530	60	2027											
MYH14	79784	broad.mit.edu;ucsc.edu	37	19	50783389	50783389	+	Silent	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	T	50783389	C	T	50783389	2	4	34	1	0	0	0	0	0	0	0	1	10040	535	19	1		1	MYH14	19	50783389	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	7987936	50783389	8345594	61	2028											
TUBB1	81027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57597910	57597910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	57597910	T	C	57597910	3	2	34	1	0	0	0	0	1	0	0	0	16765	1464	51	3	74	3	TUBB1	20	57597910	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08		57597910	5427610	62	2029											
SON	6651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	34927198	34927198	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	-	34927198	A	-	34927198	7	5	34	1	0	1	0	1	0	0	0	0	14939	117	5	0	5671	0	SON	21	34927198	Frame_Shift_Del	DEL	A	TCGA-A4-7734-01A-11D-2136-08		34927198	13202697	63	2030											
RIPK4	54101	broad.mit.edu	37	21	43166867	43166867	+	Silent	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	C	43166867	G	C	43166867	2	2	34	1	0	0	0	0	0	0	0	1	13396	1103	39	4		4	RIPK4	21	43166867	Silent	SNP	G	TCGA-A4-7734-01A-11D-2136-08	8239669	43166867	4963028	64	2031											
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43963563	43963563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	A	43963563	G	A	43963563	3	1	34	1	0	0	0	0	1	0	0	0	14610	1232	43	2	607	2	SLC37A1	21	43963563	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	796696	43963563	4166332	65	2032											
KLHL34	257240	hgsc.bcm.edu	37	X	21675434	21675434	+	Missense_Mutation	SNP	A	A	G	rs145604187		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	G	21675434	A	G	21675434	3	3	34	1	0	0	0	0	1	0	0	0	8394	131	5	3	1465	3	KLHL34	23	21675434	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08		21675434	133595126	66	2033											
GPR174	84636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	78427128	78427128	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	-	78427128	G	-	78427128	7	5	34	1	0	1	0	1	0	0	0	0	6679	1103	39	0	626	0	GPR174	23	78427128	Frame_Shift_Del	DEL	G	TCGA-A4-7734-01A-11D-2136-08	56751694	78427128	76843432	67	2034											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11184573	11184573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	11184573	G	T	11184573	3	4	35	1	0	0	0	0	1	0	0	0	9961	942	33	4	1053	4	MTOR	1	11184573	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08		11184573	238066048	1	2035											
BEST4	266675	hgsc.bcm.edu	37	1	45252159	45252159	+	Missense_Mutation	SNP	T	T	C	rs41306591		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	C	45252159	T	C	45252159	3	2	35	1	0	0	0	0	1	0	0	0	1407	1696	59	3	992	3	BEST4	1	45252159	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08	34067586	45252159	203998462	2	2036											
TRIM33	51592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114948195	114948195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	114948195	G	A	114948195	3	1	35	1	0	0	0	0	1	0	0	0	16519	1319	46	2	802	2	TRIM33	1	114948195	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	69696036	114948195	134302426	3	2037											
OBSCN	84033	hgsc.bcm.edu	37	1	228467538	228467538	+	Silent	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	228467538	C	G	228467538	2	3	35	1	0	0	0	0	0	0	0	1	10819	813	29	4		4	OBSCN	1	228467538	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08	113519343	228467538	20783083	4	2038											
RYR2	6262	hgsc.bcm.edu	37	1	237804221	237804221	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	237804221	C	G	237804221	3	3	35	1	0	0	0	0	1	0	0	0	13782	477	17	4	7326	4	RYR2	1	237804221	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	9336683	237804221	11446400	5	2039											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21224920	21224921	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	21224921	-	G	21224920	7	5	35	1	0	1	1	0	0	0	0	0	785	1567	55	0	321	0	APOB	2	21224920	Frame_Shift_Ins	INS	-	TCGA-A4-7828-01A-11D-2136-08		21224920	221974453	6	2040											
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	169938176	169938176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	169938176	G	A	169938176	3	1	35	1	0	0	0	0	1	0	0	0	4500	1290	45	2	87	2	DHRS9	2	169938176	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	148713256	169938176	73261197	7	2041											
CDCA7	83879	bcgsc.ca	37	2	174231883	174231883	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	174231883	G	A	174231883	4	1	35	1	0	0	0	0	0	1	0	0	3092	1212	42	2	1225	2	CDCA7	2	174231883	Nonsense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	4293707	174231883	68967490	8	2042											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu	37	2	197781305	197781305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	197781305	C	A	197781305	3	1	35	1	0	0	0	0	1	0	0	0	11784	739	26	4	2554	4	PGAP1	2	197781305	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	23549422	197781305	45418068	9	2043											
SPAG16	79582	hgsc.bcm.edu	37	2	214204970	214204970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	C	214204970	A	C	214204970	3	2	35	1	0	0	0	0	1	0	0	0	14991	43	2	5	658	5	SPAG16	2	214204970	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	16423665	214204970	28994403	10	2044											
CLCN2	1181	hgsc.bcm.edu	37	3	184075764	184075764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	184075764	G	A	184075764	3	1	35	1	0	0	0	0	1	0	0	0	3465	1203	42	2	2175	2	CLCN2	3	184075764	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08		184075764	13946666	11	2045											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	57888371	57888373	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	-	57888373	AAG	-	57888371	7	5	35	1	0	1	0	1	0	0	0	0	12222	130	5	0	2544	0	POLR2B	4	57888371	In_Frame_Del	DEL	AAG	TCGA-A4-7828-01A-11D-2136-08		57888371	133265905	12	2046											
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	52366069	52366069	+	Silent	SNP	C	C	G	rs142557473	alternate_allele	TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	52366069	C	G	52366069	2	3	35	1	0	0	0	0	0	0	0	1	7882	639	23	4		4	ITGA2	5	52366069	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		52366069	128549191	13	2047											
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79034426	79034426	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	-	79034426	G	-	79034426	7	5	35	1	0	1	0	1	0	0	0	0	3592	1000	35	0	9844	0	CMYA5	5	79034426	Frame_Shift_Del	DEL	G	TCGA-A4-7828-01A-11D-2136-08	26668357	79034426	101880834	14	2048											
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797258	128797258	+	Silent	SNP	G	G	C	rs147557427		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	C	128797258	G	C	128797258	2	2	35	1	0	0	0	0	0	0	0	1	264	1306	46	4		4	ADAMTS19	5	128797258	Silent	SNP	G	TCGA-A4-7828-01A-11D-2136-08	49762832	128797258	52118002	15	2049											
ANKHD1	54882	hgsc.bcm.edu	37	5	139828840	139828840	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	139828840	C	G	139828840	3	3	35	1	0	0	0	0	1	0	0	0	628	827	29	4	1218	4	ANKHD1	5	139828840	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	11031582	139828840	41086420	16	2050											
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140307713	140307713	+	Silent	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	140307713	A	G	140307713	2	3	35	1	0	0	0	0	0	0	0	1	11539	69	3	3		3	PCDHAC1	5	140307713	Silent	SNP	A	TCGA-A4-7828-01A-11D-2136-08	478873	140307713	40607547	17	2051											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169446069	169446069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	169446069	A	G	169446069	3	3	35	1	0	0	0	0	1	0	0	0	4689	275	10	3	3468	3	DOCK2	5	169446069	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	29138356	169446069	11469191	18	2052											
PKIB	5570	hgsc.bcm.edu	37	6	123022647	123022647	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	C	123022647	T	C	123022647	5	2	35	1	0	0	0	0	0	0	1	0	11981	1653	57	3		3	PKIB	6	123022647	Splice_Site	SNP	T	TCGA-A4-7828-01A-11D-2136-08		123022647	48092420	19	2053											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47944905	47944905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	47944905	T	A	47944905	3	1	35	1	0	0	0	0	1	0	0	0	11971	1841	64	5	7197	5	PKD1L1	7	47944905	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08		47944905	111193758	20	2054											
ZKSCAN5	23660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99129235	99129235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	99129235	G	A	99129235	3	1	35	1	0	0	0	0	1	0	0	0	17702	1029	36	2	1905	2	ZKSCAN5	7	99129235	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	51184330	99129235	60009428	21	2055											
VGF	7425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100806695	100806695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	100806695	T	A	100806695	3	1	35	1	0	0	0	0	1	0	0	0	17169	1551	54	5	421	5	VGF	7	100806695	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08	1677460	100806695	58331968	22	2056											
TBXAS1	6916	hgsc.bcm.edu;bcgsc.ca	37	7	139719838	139719838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	C	139719838	T	C	139719838	3	2	35	1	0	0	0	0	1	0	0	0	15676	1535	53	3	1736	3	TBXAS1	7	139719838	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08	38913143	139719838	19418825	23	2057											
CPA6	57094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	68397000	68397000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	68397000	G	A	68397000	3	1	35	1	0	0	0	0	1	0	0	0	3796	1232	43	2	672	2	CPA6	8	68397000	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08		68397000	77967022	24	2058											
WNK2	65268	hgsc.bcm.edu	37	9	96055159	96055159	+	Silent	SNP	C	C	T	rs56125631	bycluster	TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	96055159	C	T	96055159	2	4	35	1	0	0	0	0	0	0	0	1	17390	639	23	1		1	WNK2	9	96055159	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		96055159	45158272	25	2059											
CCDC7	221016	broad.mit.edu	37	10	32854549	32854549	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	32854549	G	T	32854549	5	4	35	1	0	0	0	0	0	0	1	0	2844	1275	44	4	1252	4	CCDC7	10	32854549	Splice_Site	SNP	G	TCGA-A4-7828-01A-11D-2136-08		32854549	102680198	26	2060											
GPRIN2	9721	hgsc.bcm.edu	37	10	46999189	46999190	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	-	46999190	CA	-	46999189	7	5	35	1	0	1	0	1	0	0	0	0	6737	697	25	0	311	0	GPRIN2	10	46999189	Frame_Shift_Del	DEL	CA	TCGA-A4-7828-01A-11D-2136-08	14144640	46999189	88535558	27	2061											
ZNF488	118738	broad.mit.edu	37	10	48371023	48371023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	48371023	G	T	48371023	3	4	35	1	0	0	0	0	1	0	0	0	17952	971	34	4	493	4	ZNF488	10	48371023	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	1371834	48371023	87163724	28	2062											
C10orf137	26098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	127442312	127442312	+	Missense_Mutation	SNP	A	A	G	rs199695348		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	127442312	A	G	127442312	3	3	35	1	0	0	0	0	1	0	0	0	1596	101	4	3	3431	3	C10orf137	10	127442312	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	79071289	127442312	8092435	29	2063											
MUC5B	727897	hgsc.bcm.edu	37	11	1268488	1268488	+	Missense_Mutation	SNP	C	C	T	rs200106077		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	1268488	C	T	1268488	3	4	35	1	0	0	0	0	1	0	0	0	9986	739	26	2	10509	2	MUC5B	11	1268488	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08		1268488	133738028	30	2064											
TCN1	6947	bcgsc.ca	37	11	59622265	59622265	+	Silent	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	59622265	A	G	59622265	2	3	35	1	0	0	0	0	0	0	0	1	15718	291	11	3		3	TCN1	11	59622265	Silent	SNP	A	TCGA-A4-7828-01A-11D-2136-08	58353777	59622265	75384251	31	2065											
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74883496	74883496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	C	74883496	G	C	74883496	3	2	35	1	0	0	0	0	1	0	0	0	14740	1261	44	4	880	4	SLCO2B1	11	74883496	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	15261231	74883496	60123020	32	2066											
ARHGEF12	23365	broad.mit.edu	37	11	120300474	120300474	+	Silent	SNP	C	C	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	120300474	C	T	120300474	2	4	35	1	0	0	0	0	0	0	0	1	897	845	30	2		2	ARHGEF12	11	120300474	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08	45416978	120300474	14706042	33	2067											
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54857070	54857070	+	Silent	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	54857070	A	G	54857070	2	3	35	1	0	0	0	0	0	0	0	1	6893	214	8	3		3	GTSF1	12	54857070	Silent	SNP	A	TCGA-A4-7828-01A-11D-2136-08		54857070	78994825	34	2068											
AGAP2	116986	hgsc.bcm.edu	37	12	58120409	58120409	+	Missense_Mutation	SNP	C	C	T	rs199546118		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	58120409	C	T	58120409	3	4	35	1	0	0	0	0	1	0	0	0	368	768	27	1	77	1	AGAP2	12	58120409	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	3263339	58120409	75731486	35	2069											
NAV3	89795	hgsc.bcm.edu	37	12	78574710	78574710	+	Silent	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	78574710	A	G	78574710	2	3	35	1	0	0	0	0	0	0	0	1	10192	175	7	3		3	NAV3	12	78574710	Silent	SNP	A	TCGA-A4-7828-01A-11D-2136-08	20454301	78574710	55277185	36	2070											
SHISA2	387914	hgsc.bcm.edu	37	13	26625047	26625047	+	Silent	SNP	G	G	A	rs4770911		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	26625047	G	A	26625047	2	1	35	1	0	0	0	0	0	0	0	1	14293	962	34	2		2	SHISA2	13	26625047	Silent	SNP	G	TCGA-A4-7828-01A-11D-2136-08		26625047	88544831	37	2071											
FRY	10129	bcgsc.ca	37	13	32811616	32811616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	32811616	G	A	32811616	3	1	35	1	0	0	0	0	1	0	0	0	6070	1087	38	1	6085	1	FRY	13	32811616	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	6186569	32811616	82358262	38	2072											
MYH6	4624	hgsc.bcm.edu;broad.mit.edu	37	14	23859655	23859655	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	23859655	C	G	23859655	3	3	35	1	0	0	0	0	1	0	0	0	10045	753	26	4	2532	4	MYH6	14	23859655	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08		23859655	83489885	39	2073											
COCH	1690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31353851	31353851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	C	31353851	A	C	31353851	3	2	35	1	0	0	0	0	1	0	0	0	3658	101	4	5	752	5	COCH	14	31353851	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	7494196	31353851	75995689	40	2074											
TUBGCP5	114791	broad.mit.edu;bcgsc.ca	37	15	22872435	22872444	+	Frame_Shift_Del	DEL	AAACTGCCAT	AAACTGCCAT	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AAACTGCCAT	AAACTGCCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	-	22872444	AAACTGCCAT	-	22872435	7	5	35	1	0	1	0	1	0	0	0	0	16781	11	1	0	3050	0	TUBGCP5	15	22872435	Frame_Shift_Del	DEL	AAACTGCCAT	TCGA-A4-7828-01A-11D-2136-08		22872435	79658957	41	2075											
TRAF7	84231	hgsc.bcm.edu	37	16	2222231	2222231	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	2222231	T	G	2222231	3	3	35	1	0	0	0	0	1	0	0	0	16458	1696	59	5	541	5	TRAF7	16	2222231	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08		2222231	88132522	42	2076											
CCDC64B	146439	hgsc.bcm.edu	37	16	3081004	3081004	+	Nonsense_Mutation	SNP	G	G	A	rs199875074		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	3081004	G	A	3081004	4	1	35	1	0	0	0	0	0	1	0	0	2838	1095	38	1	1128	1	CCDC64B	16	3081004	Nonsense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	858773	3081004	87273749	43	2077											
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48734448	48734448	+	Silent	SNP	C	C	T	rs139452504		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	48734448	C	T	48734448	2	4	35	1	0	0	0	0	0	0	0	1	54	755	27	1		1	ABCC3	17	48734448	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		48734448	32460762	44	2078											
SPAG9	9043	broad.mit.edu	37	17	49063070	49063071	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	-	49063071	AA	-	49063070	7	5	35	1	0	1	0	1	0	0	0	0	14998	242	9	0	988	0	SPAG9	17	49063070	Frame_Shift_Del	DEL	AA	TCGA-A4-7828-01A-11D-2136-08	328622	49063070	32132140	45	2079											
EPX	8288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56281634	56281634	+	Silent	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	56281634	G	A	56281634	2	1	35	1	0	0	0	0	0	0	0	1	5202	1277	45	2		2	EPX	17	56281634	Silent	SNP	G	TCGA-A4-7828-01A-11D-2136-08	7218564	56281634	24913576	46	2080											
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80129603	80129603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	80129603	C	G	80129603	3	3	35	1	0	0	0	0	1	0	0	0	2829	797	28	4	915	4	CCDC57	17	80129603	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	23847969	80129603	1065607	47	2081											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	5416056	5416056	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	5416056	T	A	5416056	3	1	35	1	0	0	0	0	1	0	0	0	5156	1812	63	5	1475	5	EPB41L3	18	5416056	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08		5416056	72661192	48	2082											
PRAM1	84106	hgsc.bcm.edu	37	19	8563524	8563524	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	8563524	C	A	8563524	4	1	35	1	0	0	0	0	0	1	0	0	12433	893	31	4	877	4	PRAM1	19	8563524	Nonsense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08		8563524	50565459	49	2083											
TMEM205	374882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11453637	11453637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	11453637	G	T	11453637	3	4	35	1	0	0	0	0	1	0	0	0	16142	1357	47	4	149	4	TMEM205	19	11453637	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	2890113	11453637	47675346	50	2084											
ANO8	57719	hgsc.bcm.edu	37	19	17439378	17439378	+	Missense_Mutation	SNP	G	G	A	rs73511896		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	17439378	G	A	17439378	3	1	35	1	0	0	0	0	1	0	0	0	703	1000	35	2	1903	2	ANO8	19	17439378	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	5985741	17439378	41689605	51	2085											
CACNG8	59283	hgsc.bcm.edu	37	19	54485464	54485464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	54485464	C	G	54485464	3	3	35	1	0	0	0	0	1	0	0	0	2565	825	29	4	653	4	CACNG8	19	54485464	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	37046086	54485464	4643519	52	2086											
ISOC2	79763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55966664	55966664	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	55966664	G	A	55966664	4	1	35	1	0	0	0	0	0	1	0	0	7870	1328	46	2	247	2	ISOC2	19	55966664	Nonsense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	1481200	55966664	3162319	53	2087											
DHX35	60625	bcgsc.ca	37	20	37623476	37623476	+	Silent	SNP	C	C	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	37623476	C	A	37623476	2	1	35	1	0	0	0	0	0	0	0	1	4510	760	27	4		4	DHX35	20	37623476	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		37623476	25402044	54	2088											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	41306544	41306544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	41306544	G	T	41306544	3	4	35	1	0	0	0	0	1	0	0	0	12825	1116	39	4	3371	4	PTPRT	20	41306544	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	3683068	41306544	21718976	55	2089											
TMEM189	387521	hgsc.bcm.edu	37	20	48770156	48770156	+	Missense_Mutation	SNP	A	A	C	rs2026757		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	C	48770156	A	C	48770156	3	2	35	1	0	0	0	0	1	0	0	0	16123	188	7	5	817	5	TMEM189	20	48770156	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	7463612	48770156	14255364	56	2090											
MYT1	4661	broad.mit.edu	37	20	62851191	62851191	+	Silent	SNP	C	C	T	rs117853857		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	62851191	C	T	62851191	2	4	35	1	0	0	0	0	0	0	0	1	10113	535	19	1		1	MYT1	20	62851191	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08	14081035	62851191	174329	57	2091											
FLJ44635	0	ucsc.edu	37	X	71379997	71379997	+	Silent	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	71379997	C	G	71379997	2	3	35	1	0	0	0	0	0	0	0	1	5938	697	25	4		4	FLJ44635	23	71379997	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		71379997	83890563	58	2092											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	109695056	109695056	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	-	109695056	G	-	109695056	7	5	35	1	0	1	0	1	0	0	0	0	13287	942	33	0	1213	0	RGAG1	23	109695056	Frame_Shift_Del	DEL	G	TCGA-A4-7828-01A-11D-2136-08	38315059	109695056	45575504	59	2093	28	2									
RGAG1	57529	bcgsc.ca	37	X	109695057	109695057	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	109695057	A	T	109695057	3	4	35	1	0	0	0	0	1	0	0	0	13287	301	11	5	1214	5	RGAG1	23	109695057	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	1	109695057	45575503	60	2094	28	2									
MBNL3	55796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	131540269	131540269	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	131540269	T	A	131540269	3	1	35	1	0	0	0	0	1	0	0	0	9362	1812	63	5	824	5	MBNL3	23	131540269	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08	21845212	131540269	23730291	61	2095											
CDR1	1038	hgsc.bcm.edu	37	X	139866440	139866440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	G	139866440	A	G	139866440	3	3	35	1	0	0	0	0	1	0	0	0	3173	391	14	3	700	3	CDR1	23	139866440	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	8326171	139866440	15404120	62	2096											
SLC6A8	6535	broad.mit.edu	37	X	152960547	152960547	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	T	152960547	C	T	152960547	4	4	35	1	0	0	0	0	0	1	0	0	14703	595	21	2	1836	2	SLC6A8	23	152960547	Nonsense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	13094107	152960547	2310013	63	2097											
ATP6AP1	537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153657422	153657422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	A	153657422	C	A	153657422	3	1	35	1	0	0	0	0	1	0	0	0	1165	826	29	4	196	4	ATP6AP1	23	153657422	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	696875	153657422	1613138	64	2098											
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3342300	3342300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	3342300	A	G	3342300	3	3	36	1	0	0	0	0	1	0	0	0	12467	159	6	3	3145	3	PRDM16	1	3342300	Missense_Mutation	SNP	A	TCGA-A4-7915-01A-11D-2201-08		3342300	245908321	1	2099											
TAS1R1	80835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6639491	6639491	+	Silent	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	6639491	C	T	6639491	2	4	36	1	0	0	0	0	0	0	0	1	15574	594	21	2		2	TAS1R1	1	6639491	Silent	SNP	C	TCGA-A4-7915-01A-11D-2201-08	3297191	6639491	242611130	2	2100											
COL8A2	1296	hgsc.bcm.edu;bcgsc.ca	37	1	36564488	36564488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	36564488	T	C	36564488	3	2	36	1	0	0	0	0	1	0	0	0	3708	1551	54	3	1321	3	COL8A2	1	36564488	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08	29924997	36564488	212686133	3	2101											
MACF1	23499	hgsc.bcm.edu	37	1	39908528	39908528	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	39908528	C	G	39908528	4	3	36	1	0	0	0	0	0	1	0	0	9151	838	29	4	19515	4	MACF1	1	39908528	Nonsense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	3344040	39908528	209342093	4	2102											
NPR1	4881	hgsc.bcm.edu	37	1	153651704	153651704	+	Silent	SNP	A	A	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	153651704	A	G	153651704	2	3	36	1	0	0	0	0	0	0	0	1	10601	378	14	3		3	NPR1	1	153651704	Silent	SNP	A	TCGA-A4-7915-01A-11D-2201-08	113743176	153651704	95598917	5	2103											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176809321	176809321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	176809321	G	A	176809321	3	1	36	1	0	0	0	0	1	0	0	0	11440	942	33	2	5350	2	PAPPA2	1	176809321	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	23157617	176809321	72441300	6	2104											
RYR2	6262	broad.mit.edu;bcgsc.ca	37	1	237604652	237604652	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	237604652	G	C	237604652	3	2	36	1	0	0	0	0	1	0	0	0	13782	942	33	4	1089	4	RYR2	1	237604652	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	60795331	237604652	11645969	7	2105											
GREB1	9687	broad.mit.edu;bcgsc.ca	37	2	11716612	11716612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	11716612	T	A	11716612	3	1	36	1	0	0	0	0	1	0	0	0	6767	1461	51	5	602	5	GREB1	2	11716612	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08		11716612	231482761	8	2106											
GRM2	2912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51750001	51750001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	51750001	C	T	51750001	3	4	36	1	0	0	0	0	1	0	0	0	6804	681	24	2	2222	2	GRM2	3	51750001	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		51750001	146272429	9	2107											
PBRM1	55193	hgsc.bcm.edu	37	3	52678740	52678740	+	Silent	SNP	A	A	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	52678740	A	G	52678740	2	3	36	1	0	0	0	0	0	0	0	1	11498	407	15	3		3	PBRM1	3	52678740	Silent	SNP	A	TCGA-A4-7915-01A-11D-2201-08	928739	52678740	145343690	10	2108											
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	62477094	62477096	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	-	62477096	AAC	-	62477094	7	5	36	1	0	1	0	1	0	0	0	0	2572	349	13	0	1155	0	CADPS	3	62477094	In_Frame_Del	DEL	AAC	TCGA-A4-7915-01A-11D-2201-08	9798354	62477094	135545336	11	2109											
LMOD3	56203	hgsc.bcm.edu	37	3	69169080	69169080	+	Silent	SNP	T	T	C	rs111848977		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	69169080	T	C	69169080	2	2	36	1	0	0	0	0	0	0	0	1	8865	1838	64	3		3	LMOD3	3	69169080	Silent	SNP	T	TCGA-A4-7915-01A-11D-2201-08	6691986	69169080	128853350	12	2110											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113376859	113376859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	113376859	C	A	113376859	3	1	36	1	0	0	0	0	1	0	0	0	8275	710	25	4	3071	4	KIAA2018	3	113376859	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	44207779	113376859	84645571	13	2111											
MUC20	200958	hgsc.bcm.edu	37	3	195456549	195456549	+	Missense_Mutation	SNP	T	T	C	rs201857816		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	195456549	T	C	195456549	3	2	36	1	0	0	0	0	1	0	0	0	9983	1580	55	3	1501	3	MUC20	3	195456549	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08	82079690	195456549	2565881	14	2112											
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123305047	123305047	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	123305047	C	G	123305047	3	3	36	1	0	0	0	0	1	0	0	0	231	855	30	4	465	4	ADAD1	4	123305047	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		123305047	67849229	15	2113											
PGBD1	84547	broad.mit.edu;bcgsc.ca	37	6	28269463	28269463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	28269463	C	T	28269463	3	4	36	1	0	0	0	0	1	0	0	0	11787	797	28	2	1854	2	PGBD1	6	28269463	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		28269463	142845604	16	2114											
SLC35D3	340146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	137245376	137245376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	137245376	G	A	137245376	3	1	36	1	0	0	0	0	1	0	0	0	14596	1087	38	1	799	1	SLC35D3	6	137245376	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	108975913	137245376	33869691	17	2115											
IFNGR1	3459	broad.mit.edu;bcgsc.ca	37	6	137519461	137519461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	137519461	C	A	137519461	3	1	36	1	0	0	0	0	1	0	0	0	7556	768	27	4	296	4	IFNGR1	6	137519461	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	274085	137519461	33595606	18	2116											
RP9	6100	broad.mit.edu	37	7	33136131	33136131	+	Silent	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	33136131	G	A	33136131	2	1	36	1	0	0	0	0	0	0	0	1	13548	1368	48	2		2	RP9	7	33136131	Silent	SNP	G	TCGA-A4-7915-01A-11D-2201-08		33136131	126002532	19	2117											
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107572810	107572810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	107572810	G	A	107572810	3	1	36	1	0	0	0	0	1	0	0	0	8617	1261	44	2	1187	2	LAMB1	7	107572810	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	74436679	107572810	51565853	20	2118											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121653581	121653581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	121653581	G	T	121653581	3	4	36	1	0	0	0	0	1	0	0	0	12827	1029	36	4	4527	4	PTPRZ1	7	121653581	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	14080771	121653581	37485082	21	2119											
SHH	6469	hgsc.bcm.edu	37	7	155596098	155596098	+	Silent	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	155596098	G	A	155596098	2	1	36	1	0	0	0	0	0	0	0	1	14292	1103	39	1		1	SHH	7	155596098	Silent	SNP	G	TCGA-A4-7915-01A-11D-2201-08	33942517	155596098	3542565	22	2120											
SCARA5	286133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27737097	27737097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	27737097	C	T	27737097	3	4	36	1	0	0	0	0	1	0	0	0	13893	884	31	1	155	1	SCARA5	8	27737097	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		27737097	118626925	23	2121											
RAD21	5885	broad.mit.edu;bcgsc.ca	37	8	117862960	117862960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	117862960	G	A	117862960	3	1	36	1	0	0	0	0	1	0	0	0	12994	1348	47	2	390	2	RAD21	8	117862960	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	90125863	117862960	28501062	24	2122											
FBXL6	26233	hgsc.bcm.edu	37	8	145581950	145581950	+	Missense_Mutation	SNP	C	C	G	rs200282665		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	145581950	C	G	145581950	3	3	36	1	0	0	0	0	1	0	0	0	5730	739	26	4	1497	4	FBXL6	8	145581950	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	27718990	145581950	782072	25	2123											
CCIN	881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	36170395	36170395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	36170395	C	T	36170395	3	4	36	1	0	0	0	0	1	0	0	0	2880	797	28	2	898	2	CCIN	9	36170395	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		36170395	105043036	26	2124											
USP20	10868	hgsc.bcm.edu	37	9	132625508	132625508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	132625508	C	T	132625508	3	4	36	1	0	0	0	0	1	0	0	0	17064	768	27	1	567	1	USP20	9	132625508	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	96455113	132625508	8587923	27	2125											
CDH23	64072	hgsc.bcm.edu	37	10	73454012	73454012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	73454012	C	G	73454012	3	3	36	1	0	0	0	0	1	0	0	0	3110	739	26	4	2590	4	CDH23	10	73454012	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		73454012	62080735	28	2126											
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89501012	89501012	+	Silent	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	89501012	C	T	89501012	2	4	36	1	0	0	0	0	0	0	0	1	11442	564	20	2		2	PAPSS2	10	89501012	Silent	SNP	C	TCGA-A4-7915-01A-11D-2201-08	16047000	89501012	46033735	29	2127											
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	22294380	22294380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	22294380	C	A	22294380	3	1	36	1	0	0	0	0	1	0	0	0	700	855	30	4	2154	4	ANO5	11	22294380	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		22294380	112712136	30	2128											
HSD17B12	51144	hgsc.bcm.edu	37	11	43837920	43837920	+	Silent	SNP	T	T	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	43837920	T	C	43837920	2	2	36	1	0	0	0	0	0	0	0	1	7388	1742	61	3		3	HSD17B12	11	43837920	Silent	SNP	T	TCGA-A4-7915-01A-11D-2201-08	21543540	43837920	91168596	31	2129											
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63679913	63679913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	63679913	C	A	63679913	3	1	36	1	0	0	0	0	1	0	0	0	13196	652	23	4	458	4	RCOR2	11	63679913	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	19841993	63679913	71326603	32	2130											
EHBP1L1	254102	hgsc.bcm.edu	37	11	65346571	65346571	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	65346571	G	C	65346571	3	2	36	1	0	0	0	0	1	0	0	0	4978	1261	44	4	133	4	EHBP1L1	11	65346571	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	1666658	65346571	69659945	33	2131											
RBM4B	83759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66444485	66444485	+	Silent	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	66444485	G	A	66444485	2	1	36	1	0	0	0	0	0	0	0	1	13155	1049	37	1		1	RBM4B	11	66444485	Silent	SNP	G	TCGA-A4-7915-01A-11D-2201-08	1097914	66444485	68562031	34	2132											
SLC36A4	120103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92917687	92917687	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	92917687	C	A	92917687	5	1	36	1	0	0	0	0	0	0	1	0	14609	927	32	4	1371	4	SLC36A4	11	92917687	Splice_Site	SNP	C	TCGA-A4-7915-01A-11D-2201-08	26473202	92917687	42088829	35	2133											
TEP1	7011	broad.mit.edu;bcgsc.ca	37	14	20840924	20840924	+	Silent	SNP	T	T	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	20840924	T	C	20840924	2	2	36	1	0	0	0	0	0	0	0	1	15771	1722	60	3		3	TEP1	14	20840924	Silent	SNP	T	TCGA-A4-7915-01A-11D-2201-08		20840924	86508616	36	2134											
SLC9A3R2	9351	hgsc.bcm.edu	37	16	2077090	2077090	+	Missense_Mutation	SNP	G	G	C	rs73496087		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	2077090	G	C	2077090	3	2	36	1	0	0	0	0	1	0	0	0	14728	933	33	4	86	4	SLC9A3R2	16	2077090	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08		2077090	88277663	37	2135											
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30490672	30490672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	30490672	G	A	30490672	3	1	36	1	0	0	0	0	1	0	0	0	7893	942	33	2	488	2	ITGAL	16	30490672	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	28413582	30490672	59864081	38	2136											
DNAJA2	10294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	47005807	47005807	+	Splice_Site	DEL	C	C	-	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	-	47005807	C	-	47005807	8	5	36	1	0	1	0	1	0	0	1	0	4614	579	20	0	1131	0	DNAJA2	16	47005807	Splice_Site	DEL	C	TCGA-A4-7915-01A-11D-2201-08	16515135	47005807	43348946	39	2137											
MMP15	4324	hgsc.bcm.edu	37	16	58079306	58079306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	58079306	C	T	58079306	3	4	36	1	0	0	0	0	1	0	0	0	9661	536	19	1	2004	1	MMP15	16	58079306	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	11073499	58079306	32275447	40	2138											
KRT10	3858	hgsc.bcm.edu	37	17	38975327	38975327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	38975327	T	G	38975327	3	3	36	1	0	0	0	0	1	0	0	0	8455	1696	59	5	302	5	KRT10	17	38975327	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08		38975327	42219883	41	2139											
C17orf82	388407	hgsc.bcm.edu	37	17	59489911	59489911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	59489911	G	C	59489911	3	2	36	1	0	0	0	0	1	0	0	0	1889	1203	42	4	577	4	C17orf82	17	59489911	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	20514584	59489911	21705299	42	2140											
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2951317	2951317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	2951317	G	T	2951317	3	4	36	1	0	0	0	0	1	0	0	0	8926	1000	35	4	2432	4	LPIN2	18	2951317	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08		2951317	75125931	43	2141											
JSRP1	126306	hgsc.bcm.edu	37	19	2253780	2253780	+	Missense_Mutation	SNP	A	A	G	rs10426549		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	2253780	A	G	2253780	3	3	36	1	0	0	0	0	1	0	0	0	7973	275	10	3	732	3	JSRP1	19	2253780	Missense_Mutation	SNP	A	TCGA-A4-7915-01A-11D-2201-08		2253780	56875203	44	2142											
MRPL54	116541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3762750	3762750	+	Missense_Mutation	SNP	G	G	T	rs200308520		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	3762750	G	T	3762750	3	4	36	1	0	0	0	0	1	0	0	0	9825	1203	42	4	54	4	MRPL54	19	3762750	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	1508970	3762750	55366233	45	2143											
SHD	56961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4290585	4290585	+	Silent	SNP	C	C	T	rs111268424		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	T	4290585	C	T	4290585	2	4	36	1	0	0	0	0	0	0	0	1	14288	639	23	1		1	SHD	19	4290585	Silent	SNP	C	TCGA-A4-7915-01A-11D-2201-08	527835	4290585	54838398	46	2144											
SPTBN4	57731	hgsc.bcm.edu	37	19	41025619	41025619	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	41025619	C	G	41025619	3	3	36	1	0	0	0	0	1	0	0	0	15133	768	27	4	3273	4	SPTBN4	19	41025619	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	36735034	41025619	18103364	47	2145											
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	47422875	47422875	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	-	47422875	C	-	47422875	7	5	36	1	0	1	0	1	0	0	0	0	6802	827	29	0	945	0	ARHGAP35	19	47422875	Frame_Shift_Del	DEL	C	TCGA-A4-7915-01A-11D-2201-08	6397256	47422875	11706108	48	2146											
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	48945880	T	C	48945880	2	2	36	1	0	0	0	0	0	0	0	1	6789	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-A4-7915-01A-11D-2201-08	1523005	48945880	10183103	49	2147											
TP53RK	112858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	45315804	45315804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	C	45315804	T	C	45315804	3	2	36	1	0	0	0	0	1	0	0	0	16402	1783	62	3	415	3	TP53RK	20	45315804	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08		45315804	17709716	50	2148											
KDELR3	11015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38877225	38877225	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	A	38877225	G	A	38877225	4	1	36	1	0	0	0	0	0	1	0	0	8128	1183	41	2	374	2	KDELR3	22	38877225	Nonsense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08		38877225	12427341	51	2149											
MAP7D3	79649	broad.mit.edu	37	X	135312676	135312676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	G	135312676	A	G	135312676	3	3	36	1	0	0	0	0	1	0	0	0	9276	362	13	3	1048	3	MAP7D3	23	135312676	Missense_Mutation	SNP	A	TCGA-A4-7915-01A-11D-2201-08		135312676	19957884	52	2150											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8674682	8674682	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	8674682	A	T	8674682	3	4	37	1	0	0	0	0	1	0	0	0	13244	304	11	5	4320	5	RERE	1	8674682	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		8674682	240575939	1	2151											
TNFRSF1B	7133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12266986	12266986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	12266986	C	T	12266986	3	4	37	1	0	0	0	0	1	0	0	0	16306	838	29	2	1333	2	TNFRSF1B	1	12266986	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	3592304	12266986	236983635	2	2152											
AGMAT	79814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15909721	15909721	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	15909721	T	A	15909721	3	1	37	1	0	0	0	0	1	0	0	0	385	1493	52	5	640	5	AGMAT	1	15909721	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	3642735	15909721	233340900	3	2153											
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	48713171	48713171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	48713171	C	T	48713171	3	4	37	1	0	0	0	0	1	0	0	0	14685	681	24	2	2135	2	SLC5A9	1	48713171	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	32803450	48713171	200537450	4	2154											
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53287171	53287171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	53287171	A	G	53287171	3	3	37	1	0	0	0	0	1	0	0	0	18265	14	1	3	2159	3	ZYG11B	1	53287171	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	4574000	53287171	195963450	5	2155											
USP24	23358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	55612677	55612677	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	55612677	A	G	55612677	2	3	37	1	0	0	0	0	0	0	0	1	17067	340	12	3		3	USP24	1	55612677	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	2325506	55612677	193637944	6	2156											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62365295	62365295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	62365295	C	T	62365295	3	4	37	1	0	0	0	0	1	0	0	0	7738	855	30	2	3258	2	INADL	1	62365295	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	6752618	62365295	186885326	7	2157											
HIST2H2BE	8349	broad.mit.edu	37	1	149858178	149858178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	149858178	C	T	149858178	3	4	37	1	0	0	0	0	1	0	0	0	7186	739	26	2	371	2	HIST2H2BE	1	149858178	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	87492883	149858178	99392443	8	2158											
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152082279	152082279	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	152082279	C	T	152082279	2	4	37	1	0	0	0	0	0	0	0	1	15712	738	26	2		2	TCHH	1	152082279	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	2224101	152082279	97168342	9	2159											
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154841688	154841688	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	154841688	G	A	154841688	2	1	37	1	0	0	0	0	0	0	0	1	8087	1310	46	2		2	KCNN3	1	154841688	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	2759409	154841688	94408933	10	2160											
EFNA1	1942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155104075	155104075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	155104075	A	G	155104075	3	3	37	1	0	0	0	0	1	0	0	0	4952	72	3	3	359	3	EFNA1	1	155104075	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	262387	155104075	94146546	11	2161											
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44139638	44139638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	44139638	A	G	44139638	3	3	37	1	0	0	0	0	1	0	0	0	8972	420	15	3	1012	3	LRPPRC	2	44139638	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		44139638	199059735	12	2162											
MTHFD2	10797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74441208	74441208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	74441208	G	A	74441208	3	1	37	1	0	0	0	0	1	0	0	0	9936	1029	36	2	922	2	MTHFD2	2	74441208	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	30301570	74441208	168758165	13	2163											
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102849533	102849533	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	102849533	C	T	102849533	4	4	37	1	0	0	0	0	0	1	0	0	7671	479	17	2	1280	2	IL1RL2	2	102849533	Nonsense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	28408325	102849533	140349840	14	2164											
IL1RN	3557	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113885204	113885204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	113885204	G	A	113885204	3	1	37	1	0	0	0	0	1	0	0	0	7672	1348	47	2	86	2	IL1RN	2	113885204	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	11035671	113885204	129314169	15	2165											
KIF5C	3800	hgsc.bcm.edu	37	2	149850958	149850958	+	Silent	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	149850958	G	C	149850958	2	2	37	1	0	0	0	0	0	0	0	1	8314	1277	45	4		4	KIF5C	2	149850958	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	35965754	149850958	93348415	16	2166											
PSMD14	10213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	162227815	162227815	+	Silent	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	162227815	T	C	162227815	2	2	37	1	0	0	0	0	0	0	0	1	12707	1771	62	3		3	PSMD14	2	162227815	Silent	SNP	T	TCGA-A4-7996-01A-11D-2201-08	12376857	162227815	80971558	17	2167											
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	189898818	189898819	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	TT	189898819	-	TT	189898818	7	5	37	1	0	1	1	0	0	0	0	0	3699	101	4	0	25	0	COL5A2	2	189898818	Frame_Shift_Ins	INS	-	TCGA-A4-7996-01A-11D-2201-08	27671003	189898818	53300555	18	2168											
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204039877	204039877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	204039877	A	T	204039877	3	4	37	1	0	0	0	0	1	0	0	0	10195	14	1	5	6402	5	NBEAL1	2	204039877	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	14141059	204039877	39159496	19	2169											
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220099806	220099806	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	220099806	C	-	220099806	7	5	37	1	0	1	0	1	0	0	0	0	693	739	26	0	1497	0	ANKZF1	2	220099806	Frame_Shift_Del	DEL	C	TCGA-A4-7996-01A-11D-2201-08	16059929	220099806	23099567	20	2170											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233660917	233660917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	233660917	A	G	233660917	3	3	37	1	0	0	0	0	1	0	0	0	6385	188	7	3	1741	3	GIGYF2	2	233660917	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	13561111	233660917	9538456	21	2171											
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46307340	46307340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	46307340	A	G	46307340	3	3	37	1	0	0	0	0	1	0	0	0	2944	188	7	3	760	3	CCR3	3	46307340	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		46307340	151715090	22	2172											
PLXNB1	5364	ucsc.edu	37	3	48447207	48447207	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	48447207	T	C	48447207	5	2	37	1	0	0	0	0	0	0	1	0	12130	1536	53	3	188	3	PLXNB1	3	48447207	Splice_Site	SNP	T	TCGA-A4-7996-01A-11D-2201-08	2139867	48447207	149575223	23	2173											
GNAI2	2771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50294280	50294280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	50294280	A	C	50294280	3	2	37	1	0	0	0	0	1	0	0	0	6512	304	11	5	752	5	GNAI2	3	50294280	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	1847073	50294280	147728150	24	2174											
KIAA2018	205717	hgsc.bcm.edu	37	3	113376113	113376113	+	Silent	SNP	C	C	T	rs62265537		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	113376113	C	T	113376113	2	4	37	1	0	0	0	0	0	0	0	1	8275	796	28	2		2	KIAA2018	3	113376113	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	63081833	113376113	84646317	25	2175											
ZXDC	79364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	126194470	126194470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	126194470	T	C	126194470	3	2	37	1	0	0	0	0	1	0	0	0	18264	1783	62	3	2383	3	ZXDC	3	126194470	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	12818357	126194470	71827960	26	2176											
C4orf36	132989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87809274	87809274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	87809274	A	T	87809274	3	4	37	1	0	0	0	0	1	0	0	0	2268	231	8	5	141	5	C4orf36	4	87809274	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		87809274	103345002	27	2177											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	128812805	128812805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	128812805	C	A	128812805	3	1	37	1	0	0	0	0	1	0	0	0	12105	477	17	4	2041	4	PLK4	4	128812805	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	41003531	128812805	62341471	28	2178											
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153896859	153896859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	153896859	G	A	153896859	3	1	37	1	0	0	0	0	1	0	0	0	5883	1348	47	2	2458	2	FHDC1	4	153896859	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	25084054	153896859	37257417	29	2179											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1074691	1074691	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	1074691	T	G	1074691	3	3	37	1	0	0	0	0	1	0	0	0	14401	1609	56	5	1224	5	SLC12A7	5	1074691	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08		1074691	179840569	30	2180											
PCDHA11	56138	hgsc.bcm.edu;bcgsc.ca	37	5	140250097	140250097	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	140250097	G	C	140250097	3	2	37	1	0	0	0	0	1	0	0	0	11528	1203	42	4	1411	4	PCDHA11	5	140250097	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	139175406	140250097	40665163	31	2181											
MAT2B	27430	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	162940576	162940577	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	162940577	-	A	162940576	7	5	37	1	0	1	1	0	0	0	0	0	9338	478	17	0	318	0	MAT2B	5	162940576	Frame_Shift_Ins	INS	-	TCGA-A4-7996-01A-11D-2201-08	22690479	162940576	17974684	32	2182											
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	175843340	175843342	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	175843342	AGA	-	175843340	7	5	37	1	0	1	0	1	0	0	0	0	3567	304	11	0	688	0	CLTB	5	175843340	In_Frame_Del	DEL	AGA	TCGA-A4-7996-01A-11D-2201-08	12902764	175843340	5071920	33	2183											
F12	2161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176831350	176831350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	176831350	A	G	176831350	3	3	37	1	0	0	0	0	1	0	0	0	5341	391	14	3	1006	3	F12	5	176831350	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	988010	176831350	4083910	34	2184											
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31927082	31927082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	31927082	C	A	31927082	3	1	37	1	0	0	0	0	1	0	0	0	14372	623	22	4	37	4	SKIV2L	6	31927082	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08		31927082	139187985	35	2185											
CYP21A2	1589	broad.mit.edu;bcgsc.ca	37	6	32007842	32007846	+	Frame_Shift_Del	DEL	CAGCC	CAGCC	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	CAGCC	CAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	32007846	CAGCC	-	32007842	7	5	37	1	0	1	0	1	0	0	0	0	4155	711	25	0	2346	0	CYP21A2	6	32007842	Frame_Shift_Del	DEL	CAGCC	TCGA-A4-7996-01A-11D-2201-08	80760	32007842	139107225	36	2186											
AGPAT1	10554	broad.mit.edu	37	6	32139261	32139268	+	Frame_Shift_Del	DEL	GCCACAAA	GCCACAAA	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GCCACAAA	GCCACAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	32139268	GCCACAAA	-	32139261	7	5	37	1	0	1	0	1	0	0	0	0	386	1203	42	0	862	0	AGPAT1	6	32139261	Frame_Shift_Del	DEL	GCCACAAA	TCGA-A4-7996-01A-11D-2201-08	131419	32139261	138975806	37	2187											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51930865	51930865	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	51930865	A	G	51930865	2	3	37	1	0	0	0	0	0	0	0	1	11978	175	7	3		3	PKHD1	6	51930865	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	19791604	51930865	119184202	38	2188											
PARK2	5071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	162864432	162864432	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	162864432	C	T	162864432	2	4	37	1	0	0	0	0	0	0	0	1	11456	680	24	2		2	PARK2	6	162864432	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	110933567	162864432	8250635	39	2189											
FSCN1	6624	hgsc.bcm.edu;broad.mit.edu	37	7	5633277	5633277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	5633277	G	A	5633277	3	1	37	1	0	0	0	0	1	0	0	0	6074	971	34	2	712	2	FSCN1	7	5633277	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08		5633277	153505386	40	2190											
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	24727063	24727075	+	Frame_Shift_Del	DEL	GACTTGAAGAAAA	GACTTGAAGAAAA	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GACTTGAAGAAAA	GACTTGAAGAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	24727075	GACTTGAAGAAAA	-	24727063	7	5	37	1	0	1	0	1	0	0	0	0	9745	1290	45	0	1495	0	MPP6	7	24727063	Frame_Shift_Del	DEL	GACTTGAAGAAAA	TCGA-A4-7996-01A-11D-2201-08	19093786	24727063	134411600	41	2191											
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	44807159	44807159	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	44807159	G	-	44807159	7	5	37	1	0	1	0	1	0	0	0	0	17709	1339	47	0	2770	0	ZMIZ2	7	44807159	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	20080096	44807159	114331504	42	2192											
RELN	5649	broad.mit.edu	37	7	103159949	103159949	+	Silent	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	103159949	T	C	103159949	2	2	37	1	0	0	0	0	0	0	0	1	13233	1403	49	3		3	RELN	7	103159949	Silent	SNP	T	TCGA-A4-7996-01A-11D-2201-08	58352790	103159949	55978714	43	2193											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	111555869	111555869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	111555869	G	A	111555869	3	1	37	1	0	0	0	0	1	0	0	0	4691	1377	48	2	4903	2	DOCK4	7	111555869	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	8395920	111555869	47582794	44	2194											
ABP1	26	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150553627	150553627	+	Silent	SNP	G	G	C	rs186258416	alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	150553627	G	C	150553627	2	2	37	1	0	0	0	0	0	0	0	1	98	1103	39	4		4	ABP1	7	150553627	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	38997758	150553627	8585036	45	2195											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28991695	28991695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	28991695	C	G	28991695	3	3	37	1	0	0	0	0	1	0	0	0	8282	796	28	4	2910	4	KIF13B	8	28991695	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08		28991695	117372327	46	2196											
RB1CC1	9821	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53570007	53570007	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	53570007	C	T	53570007	2	4	37	1	0	0	0	0	0	0	0	1	13112	813	29	2		2	RB1CC1	8	53570007	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	24578312	53570007	92794015	47	2197											
C8orf46	254778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	67405943	67405943	+	Silent	SNP	T	T	A	rs139160272	byfrequency;alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	67405943	T	A	67405943	2	1	37	1	0	0	0	0	0	0	0	1	2433	1771	62	5		5	C8orf46	8	67405943	Silent	SNP	T	TCGA-A4-7996-01A-11D-2201-08	13835936	67405943	78958079	48	2198											
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	141449171	141449172	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	141449172	TT	-	141449171	7	5	37	1	0	1	0	1	0	0	0	0	16477	1493	52	0	2820	0	TRAPPC9	8	141449171	Frame_Shift_Del	DEL	TT	TCGA-A4-7996-01A-11D-2201-08	74043228	141449171	4914851	49	2199											
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	2718279	2718279	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	2718279	C	T	2718279	2	4	37	1	0	0	0	0	0	0	0	1	8102	784	28	2		2	KCNV2	9	2718279	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08		2718279	138495152	50	2200											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35699405	35699405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	35699405	C	A	35699405	3	1	37	1	0	0	0	0	1	0	0	0	15959	796	28	4	831	4	TLN1	9	35699405	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	32981126	35699405	105514026	51	2201											
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	127572163	127572163	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	127572163	C	T	127572163	2	4	37	1	0	0	0	0	0	0	0	1	10864	576	20	2		2	OLFML2A	9	127572163	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	91872758	127572163	13641268	52	2202											
CCBL1	883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131607633	131607633	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	131607633	A	T	131607633	3	4	37	1	0	0	0	0	1	0	0	0	2734	202	7	5	1264	5	CCBL1	9	131607633	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	4035470	131607633	9605798	53	2203											
PTCHD3	374308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27687708	27687708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	27687708	A	G	27687708	3	3	37	1	0	0	0	0	1	0	0	0	12744	72	3	3	488	3	PTCHD3	10	27687708	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		27687708	107847039	54	2204											
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	51585156	51585156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	51585156	G	T	51585156	3	4	37	1	0	0	0	0	1	0	0	0	10238	1290	45	4	1333	4	NCOA4	10	51585156	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	23897448	51585156	83949591	55	2205											
SLC29A3	55315	broad.mit.edu	37	10	73111339	73111339	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	73111339	T	A	73111339	3	1	37	1	0	0	0	0	1	0	0	0	14549	1667	58	5	418	5	SLC29A3	10	73111339	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	21526183	73111339	62423408	56	2206											
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88259986	88259986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	88259986	C	A	88259986	3	1	37	1	0	0	0	0	1	0	0	0	17260	912	32	4	2626	4	WAPAL	10	88259986	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	15148647	88259986	47274761	57	2207											
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89503313	89503313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	89503313	C	T	89503313	3	4	37	1	0	0	0	0	1	0	0	0	11442	797	28	2	1448	2	PAPSS2	10	89503313	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	1243327	89503313	46031434	58	2208											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89717645	89717646	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	89717646	AT	-	89717645	7	5	37	1	0	1	0	1	0	0	0	0	12748	333	12	0	696	0	PTEN	10	89717645	Frame_Shift_Del	DEL	AT	TCGA-A4-7996-01A-11D-2201-08	214332	89717645	45817102	59	2209											
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	101606844	101606844	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	101606844	G	-	101606844	7	5	37	1	0	1	0	1	0	0	0	0	53	1348	47	0	4391	0	ABCC2	10	101606844	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	11889199	101606844	33927903	60	2210											
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	127455343	127455343	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	127455343	T	-	127455343	7	5	37	1	0	1	0	1	0	0	0	0	9667	1609	56	0	115	0	MMP21	10	127455343	Frame_Shift_Del	DEL	T	TCGA-A4-7996-01A-11D-2201-08	25848499	127455343	8079404	61	2211											
DOCK1	1793	ucsc.edu;bcgsc.ca	37	10	129209146	129209146	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	129209146	G	A	129209146	2	1	37	1	0	0	0	0	0	0	0	1	4686	1190	42	2		2	DOCK1	10	129209146	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	1753803	129209146	6325601	62	2212											
OR52K1	390036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4510932	4510932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	4510932	C	T	4510932	3	4	37	1	0	0	0	0	1	0	0	0	11130	652	23	1	804	1	OR52K1	11	4510932	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08		4510932	130495584	63	2213											
DENND5A	23258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	9173965	9173965	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	9173965	G	-	9173965	7	5	37	1	0	1	0	1	0	0	0	0	4438	991	35	0	1446	0	DENND5A	11	9173965	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	4663033	9173965	125832551	64	2214											
USP47	55031	hgsc.bcm.edu;broad.mit.edu	37	11	11942036	11942036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	11942036	G	T	11942036	3	4	37	1	0	0	0	0	1	0	0	0	17090	942	33	4	1043	4	USP47	11	11942036	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	2768071	11942036	123064480	65	2215											
DDB1	1642	broad.mit.edu	37	11	61081866	61081866	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	61081866	G	A	61081866	2	1	37	1	0	0	0	0	0	0	0	1	4325	987	35	2		2	DDB1	11	61081866	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	49139830	61081866	73924650	66	2216											
SLC25A45	283130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65144060	65144060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	65144060	T	C	65144060	3	2	37	1	0	0	0	0	1	0	0	0	14523	1435	50	3	185	3	SLC25A45	11	65144060	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	4062194	65144060	69862456	67	2217											
RELA	5970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65423175	65423175	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	65423175	A	G	65423175	2	3	37	1	0	0	0	0	0	0	0	1	13229	59	3	3		3	RELA	11	65423175	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	279115	65423175	69583341	68	2218											
ANO1	55107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	69951883	69951883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	69951883	C	T	69951883	3	4	37	1	0	0	0	0	1	0	0	0	695	643	23	1	754	1	ANO1	11	69951883	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	4528708	69951883	65054633	69	2219											
MAML2	84441	hgsc.bcm.edu	37	11	95825431	95825431	+	Silent	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	95825431	T	C	95825431	2	2	37	1	0	0	0	0	0	0	0	1	9213	1722	60	3		3	MAML2	11	95825431	Silent	SNP	T	TCGA-A4-7996-01A-11D-2201-08	25873548	95825431	39181085	70	2220											
ZC3H12C	85463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	110007683	110007683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	110007683	T	C	110007683	3	2	37	1	0	0	0	0	1	0	0	0	17575	1493	52	3	323	3	ZC3H12C	11	110007683	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	14182252	110007683	24998833	71	2221											
DRD2	1813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113295344	113295344	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	113295344	A	G	113295344	2	3	37	1	0	0	0	0	0	0	0	1	4759	214	8	3		3	DRD2	11	113295344	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	3287661	113295344	21711172	72	2222											
TMEM120B	144404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122190050	122190050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	122190050	G	A	122190050	3	1	37	1	0	0	0	0	1	0	0	0	16046	1059	37	1	400	1	TMEM120B	12	122190050	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08		122190050	11661845	73	2223											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102500785	102500785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	102500785	A	G	102500785	3	3	37	1	0	0	0	0	1	0	0	0	4843	130	5	3	10972	3	DYNC1H1	14	102500785	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		102500785	4848755	74	2224											
CALML4	91860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68489823	68489823	+	Missense_Mutation	SNP	G	G	A	rs201056051		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	68489823	G	A	68489823	3	1	37	1	0	0	0	0	1	0	0	0	2590	1086	38	1	150	1	CALML4	15	68489823	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08		68489823	34041569	75	2225											
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	88679229	88679229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	88679229	G	C	88679229	3	2	37	1	0	0	0	0	1	0	0	0	10715	962	34	4	2021	4	NTRK3	15	88679229	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	20189406	88679229	13852163	76	2226											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89398462	89398462	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	89398462	C	T	89398462	2	4	37	1	0	0	0	0	0	0	0	1	117	825	29	2		2	ACAN	15	89398462	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	719233	89398462	13132930	77	2227											
RHCG	51458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90026327	90026327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	90026327	T	C	90026327	3	2	37	1	0	0	0	0	1	0	0	0	13339	1783	62	3	978	3	RHCG	15	90026327	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	627865	90026327	12505065	78	2228											
BAIAP3	8938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1398015	1398021	+	Frame_Shift_Del	DEL	ACTTGTG	ACTTGTG	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	ACTTGTG	ACTTGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	1398021	ACTTGTG	-	1398015	7	5	37	1	0	1	0	1	0	0	0	0	1304	391	14	0	3377	0	BAIAP3	16	1398015	Frame_Shift_Del	DEL	ACTTGTG	TCGA-A4-7996-01A-11D-2201-08		1398015	88956738	79	2229	29	2									
BAIAP3	8938	hgsc.bcm.edu	37	16	1398016	1398016	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	1398016	C	G	1398016	4	3	37	1	0	0	0	0	0	1	0	0	1304	576	20	4	3378	4	BAIAP3	16	1398016	Nonsense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	1	1398016	88956737	80	2230	29	2									
PRSS22	64063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2905588	2905589	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	AT	2905589	GC	AT	2905588	3	1	37	1	0	0	0	0	1	0	0	0	12629	1310	46	2	419	2	PRSS22	16	2905588	Missense_Mutation	DNP	GC	TCGA-A4-7996-01A-11D-2201-08	1507572	2905588	87449165	81	2231											
ZNF200	7752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3274128	3274128	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	3274128	G	-	3274128	7	5	37	1	0	1	0	1	0	0	0	0	17774	1116	39	0	239	0	ZNF200	16	3274128	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	368540	3274128	87080625	82	2232											
PSMB10	5699	hgsc.bcm.edu	37	16	67970649	67970649	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	67970649	G	C	67970649	3	2	37	1	0	0	0	0	1	0	0	0	12685	962	34	4	849	4	PSMB10	16	67970649	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	64696521	67970649	22384104	83	2233											
TRAF4	9618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27074242	27074243	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	27074243	-	C	27074242	7	5	37	1	0	1	1	0	0	0	0	0	16455	1783	62	0	161	0	TRAF4	17	27074242	Frame_Shift_Ins	INS	-	TCGA-A4-7996-01A-11D-2201-08		27074242	54120968	84	2234											
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27975326	27975326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	27975326	C	A	27975326	3	1	37	1	0	0	0	0	1	0	0	0	15197	594	21	4	3101	4	SSH2	17	27975326	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	901084	27975326	53219884	85	2235											
WIPF2	147179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38416825	38416825	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	38416825	G	A	38416825	2	1	37	1	0	0	0	0	0	0	0	1	17380	962	34	2		2	WIPF2	17	38416825	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	10441499	38416825	42778385	86	2236											
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39191010	39191010	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	39191010	A	T	39191010	3	4	37	1	0	0	0	0	1	0	0	0	8510	304	11	5	443	5	KRTAP1-3	17	39191010	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	774185	39191010	42004200	87	2237											
CDC27	996	hgsc.bcm.edu	37	17	45249300	45249300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	45249300	A	C	45249300	3	2	37	1	0	0	0	0	1	0	0	0	3068	41	2	5	2326	5	CDC27	17	45249300	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	6058290	45249300	35945910	88	2238											
TLK2	11011	hgsc.bcm.edu	37	17	60650591	60650591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	60650591	A	G	60650591	3	3	37	1	0	0	0	0	1	0	0	0	15956	352	13	3	1026	3	TLK2	17	60650591	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	15401291	60650591	20544619	89	2239											
MBD1	4152	hgsc.bcm.edu;broad.mit.edu	37	18	47800703	47800703	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	47800703	C	T	47800703	2	4	37	1	0	0	0	0	0	0	0	1	9349	726	26	2		2	MBD1	18	47800703	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08		47800703	30276545	90	2240											
ZNF516	9658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74154041	74154041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	74154041	C	T	74154041	3	4	37	1	0	0	0	0	1	0	0	0	17972	864	30	2	2542	2	ZNF516	18	74154041	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	26353338	74154041	3923207	91	2241											
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7810714	7810714	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	A	7810714	G	A	7810714	2	1	37	1	0	0	0	0	0	0	0	1	2986	932	33	2		2	CD209	19	7810714	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08		7810714	51318269	92	2242											
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15350519	15350519	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	15350519	C	T	15350519	2	4	37	1	0	0	0	0	0	0	0	1	1506	796	28	2		2	BRD4	19	15350519	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	7539805	15350519	43778464	93	2243											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40419757	40419757	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	40419757	A	G	40419757	2	3	37	1	0	0	0	0	0	0	0	1	5785	446	16	3		3	FCGBP	19	40419757	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	25069238	40419757	18709226	94	2244											
HRC	3270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49658077	49658077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	49658077	C	G	49658077	3	3	37	1	0	0	0	0	1	0	0	0	7359	835	29	4	1705	4	HRC	19	49658077	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	9238320	49658077	9470906	95	2245											
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53762787	53762787	+	Nonsense_Mutation	SNP	C	C	T	rs150108993		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	T	53762787	C	T	53762787	4	4	37	1	0	0	0	0	0	1	0	0	17191	528	19	1	1161	1	VN1R2	19	53762787	Nonsense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	4104710	53762787	5366196	96	2246											
SLC24A3	57419	hgsc.bcm.edu;ucsc.edu	37	20	19679325	19679325	+	Splice_Site	SNP	G	G	C	rs201062990	alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	C	19679325	G	C	19679325	5	2	37	1	0	0	0	0	0	0	1	0	14480	1159	40	4	1778	4	SLC24A3	20	19679325	Splice_Site	SNP	G	TCGA-A4-7996-01A-11D-2201-08		19679325	43346195	97	2247											
MOCS3	27304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49576203	49576203	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	49576203	T	G	49576203	3	3	37	1	0	0	0	0	1	0	0	0	9699	1821	63	5	826	5	MOCS3	20	49576203	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	29896878	49576203	13449317	98	2248											
NFATC2	4773	broad.mit.edu	37	20	50092014	50092014	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	50092014	T	G	50092014	3	3	37	1	0	0	0	0	1	0	0	0	10369	1821	63	5	1337	5	NFATC2	20	50092014	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	515811	50092014	12933506	99	2249											
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19965495	19965495	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	19965495	C	G	19965495	3	3	37	1	0	0	0	0	1	0	0	0	1003	855	30	4	1252	4	ARVCF	22	19965495	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08		19965495	31339071	100	2250											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	46655720	46655720	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	46655720	G	-	46655720	7	5	37	1	0	1	0	1	0	0	0	0	11977	1000	35	0	3265	0	PKDREJ	22	46655720	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	26690225	46655720	4648846	101	2251											
TRAPPC2	6399	hgsc.bcm.edu	37	X	13732606	13732606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	13732606	A	G	13732606	3	3	37	1	0	0	0	0	1	0	0	0	16470	362	13	3	83	3	TRAPPC2	23	13732606	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		13732606	141537954	102	2252											
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	73815805	73815805	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	-	73815805	T	-	73815805	7	5	37	1	0	1	0	1	0	0	0	0	13403	1725	60	0	1878	0	RLIM	23	73815805	Frame_Shift_Del	DEL	T	TCGA-A4-7996-01A-11D-2201-08	60083199	73815805	81454755	103	2253											
GLUD2	2747	ucsc.edu	37	X	120182436	120182436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	G	120182436	A	G	120182436	3	3	37	1	0	0	0	0	1	0	0	0	6484	412	15	3	900	3	GLUD2	23	120182436	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	46366631	120182436	35088124	104	2254											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8422892	8422892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	8422892	G	T	8422892	3	4	38	1	0	0	0	0	1	0	0	0	13244	1145	40	4	2979	4	RERE	1	8422892	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08		8422892	240827729	1	2255											
UQCRHL	0	ucsc.edu	37	1	16133912	16133912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	16133912	T	C	16133912	3	2	38	1	0	0	0	0	1	0	0	0	17035	1609	56	3	46	3	UQCRHL	1	16133912	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	7711020	16133912	233116709	2	2256											
SPEN	23013	broad.mit.edu	37	1	16203085	16203085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	16203085	C	A	16203085	3	1	38	1	0	0	0	0	1	0	0	0	15050	507	18	4	803	4	SPEN	1	16203085	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	69173	16203085	233047536	3	2257											
MAST2	23139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46290209	46290209	+	Silent	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	46290209	T	C	46290209	2	2	38	1	0	0	0	0	0	0	0	1	9332	1461	51	3		3	MAST2	1	46290209	Silent	SNP	T	TCGA-A4-7997-01A-11D-2201-08	30087124	46290209	202960412	4	2258											
WDR3	10885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	118502024	118502024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	118502024	A	G	118502024	3	3	38	1	0	0	0	0	1	0	0	0	17297	72	3	3	2888	3	WDR3	1	118502024	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	72211815	118502024	130748597	5	2259											
PDZK1	5174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145761288	145761288	+	Silent	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	145761288	T	C	145761288	2	2	38	1	0	0	0	0	0	0	0	1	11714	1403	49	3		3	PDZK1	1	145761288	Silent	SNP	T	TCGA-A4-7997-01A-11D-2201-08	27259264	145761288	103489333	6	2260											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155491175	155491175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	155491175	C	T	155491175	3	4	38	1	0	0	0	0	1	0	0	0	1041	864	30	2	8866	2	ASH1L	1	155491175	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	9729887	155491175	93759446	7	2261											
TOR1AIP2	163590	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	179834038	179834038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	179834038	C	A	179834038	3	1	38	1	0	0	0	0	1	0	0	0	16385	623	22	4	1554	4	TOR1AIP2	1	179834038	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	24342863	179834038	69416583	8	2262											
SLC41A1	254428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205770146	205770146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	205770146	C	T	205770146	3	4	38	1	0	0	0	0	1	0	0	0	14642	565	20	2	1162	2	SLC41A1	1	205770146	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	25936108	205770146	43480475	9	2263											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207109097	207109097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	207109097	C	T	207109097	3	4	38	1	0	0	0	0	1	0	0	0	11904	710	25	2	1210	2	PIGR	1	207109097	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	1338951	207109097	42141524	10	2264											
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209974723	209974723	+	Silent	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	209974723	G	A	209974723	2	1	38	1	0	0	0	0	0	0	0	1	7841	987	35	2		2	IRF6	1	209974723	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	2865626	209974723	39275898	11	2265											
LEFTY2	7044	hgsc.bcm.edu;broad.mit.edu	37	1	226127230	226127230	+	Silent	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	226127230	G	A	226127230	2	1	38	1	0	0	0	0	0	0	0	1	8723	962	34	2		2	LEFTY2	1	226127230	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	16152507	226127230	23123391	12	2266											
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	231472205	231472205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	231472205	C	A	231472205	3	1	38	1	0	0	0	0	1	0	0	0	5313	796	28	4	894	4	EXOC8	1	231472205	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	5344975	231472205	17778416	13	2267											
IRF2BP2	359948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	234744251	234744251	+	Silent	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	234744251	G	T	234744251	2	4	38	1	0	0	0	0	0	0	0	1	7837	1219	43	4		4	IRF2BP2	1	234744251	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	3272046	234744251	14506370	14	2268											
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	26533773	26533773	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	-	26533773	C	-	26533773	7	5	38	1	0	1	0	1	0	0	0	0	6637	726	26	0	517	0	GPR113	2	26533773	Frame_Shift_Del	DEL	C	TCGA-A4-7997-01A-11D-2201-08		26533773	216665600	15	2269											
OTOF	9381	ucsc.edu;bcgsc.ca	37	2	26700635	26700635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	26700635	G	C	26700635	3	2	38	1	0	0	0	0	1	0	0	0	11310	1348	47	4	4093	4	OTOF	2	26700635	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	166862	26700635	216498738	16	2270											
C2orf73	129852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54587528	54587528	+	Silent	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	54587528	G	T	54587528	2	4	38	1	0	0	0	0	0	0	0	1	2194	1364	48	4		4	C2orf73	2	54587528	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	27886893	54587528	188611845	17	2271											
ZAP70	7535	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	98341626	98341626	+	Missense_Mutation	SNP	C	C	A	rs56404668	byfrequency;alternate_allele	TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	98341626	C	A	98341626	3	1	38	1	0	0	0	0	1	0	0	0	17526	535	19	4	480	4	ZAP70	2	98341626	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	43754098	98341626	144857747	18	2272											
SUMF1	285362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	4490972	4490972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	4490972	A	C	4490972	3	2	38	1	0	0	0	0	1	0	0	0	15397	159	6	5	655	5	SUMF1	3	4490972	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08		4490972	193531458	19	2273											
ANO10	55129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	43618738	43618738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	43618738	T	A	43618738	3	1	38	1	0	0	0	0	1	0	0	0	696	1638	57	5	1406	5	ANO10	3	43618738	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	39127766	43618738	154403692	20	2274											
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56787577	56787577	+	Silent	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	56787577	G	C	56787577	2	2	38	1	0	0	0	0	0	0	0	1	904	1219	43	4		4	ARHGEF3	3	56787577	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	13168839	56787577	141234853	21	2275											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	69096768	69096770	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	-	69096770	GAA	-	69096768	7	5	38	1	0	1	0	1	0	0	0	0	16240	1294	45	0	2257	0	TMF1	3	69096768	In_Frame_Del	DEL	GAA	TCGA-A4-7997-01A-11D-2201-08	12309191	69096768	128925662	22	2276											
FRMD4B	23150	hgsc.bcm.edu	37	3	69336931	69336931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	69336931	A	G	69336931	3	3	38	1	0	0	0	0	1	0	0	0	6059	246	9	3	2707	3	FRMD4B	3	69336931	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	240163	69336931	128685499	23	2277											
EAF2	55840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121591418	121591418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	121591418	G	A	121591418	3	1	38	1	0	0	0	0	1	0	0	0	4878	1290	45	2	537	2	EAF2	3	121591418	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	52254487	121591418	76431012	24	2278											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130287032	130287032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	130287032	G	A	130287032	3	1	38	1	0	0	0	0	1	0	0	0	3705	1261	44	2	2003	2	COL6A6	3	130287032	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	8695614	130287032	67735398	25	2279											
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148930432	148930432	+	Missense_Mutation	SNP	T	T	C	rs141532762		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	148930432	T	C	148930432	3	2	38	1	0	0	0	0	1	0	0	0	3789	1406	49	3	3069	3	CP	3	148930432	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	18643400	148930432	49091998	26	2280											
CLCN2	1181	hgsc.bcm.edu;broad.mit.edu	37	3	184071155	184071155	+	Silent	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	184071155	C	A	184071155	2	1	38	1	0	0	0	0	0	0	0	1	3465	610	22	4		4	CLCN2	3	184071155	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08	35140723	184071155	13951275	27	2281											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3156098	3156098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	3156098	C	A	3156098	3	1	38	1	0	0	0	0	1	0	0	0	7464	479	17	4	3683	4	HTT	4	3156098	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08		3156098	187998178	28	2282											
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	65180367	65180367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	65180367	G	A	65180367	3	1	38	1	0	0	0	0	1	0	0	0	15758	1391	48	2	573	2	TECRL	4	65180367	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	62024269	65180367	125973909	29	2283											
SEPT11	55752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	77941678	77941678	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	77941678	T	G	77941678	3	3	38	1	0	0	0	0	1	0	0	0	14074	1841	64	5	834	5	SEPT11	4	77941678	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	12761311	77941678	113212598	30	2284											
LARP1B	55132	hgsc.bcm.edu	37	4	128998994	128998994	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	128998994	A	C	128998994	3	2	38	1	0	0	0	0	1	0	0	0	8636	15	1	5	100	5	LARP1B	4	128998994	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	51057316	128998994	62155282	31	2285											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36984988	36984988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	36984988	A	T	36984988	3	4	38	1	0	0	0	0	1	0	0	0	10435	246	9	5	1740	5	NIPBL	5	36984988	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08		36984988	143930272	32	2286											
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	142416823	142416823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	142416823	A	G	142416823	3	3	38	1	0	0	0	0	1	0	0	0	875	180	7	3	1257	3	ARHGAP26	5	142416823	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	105431835	142416823	38498437	33	2287											
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147000262	147000262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	147000262	G	T	147000262	3	4	38	1	0	0	0	0	1	0	0	0	7948	1020	36	4	339	4	JAKMIP2	5	147000262	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	4583439	147000262	33914998	34	2288											
SPDEF	25803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	34512076	34512076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	34512076	G	T	34512076	3	4	38	1	0	0	0	0	1	0	0	0	15038	1328	46	4	870	4	SPDEF	6	34512076	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08		34512076	136602991	35	2289											
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	158288583	158288583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	158288583	G	A	158288583	3	1	38	1	0	0	0	0	1	0	0	0	14922	1116	39	1	23	1	SNX9	6	158288583	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	123776507	158288583	12826484	36	2290											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116417463	116417463	+	Missense_Mutation	SNP	C	C	T	rs121913244		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	116417463	C	T	116417463	3	4	38	1	0	0	0	0	1	0	0	0	9492	826	29	2	3392	2	MET	7	116417463	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08		116417463	42721200	37	2291											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117365303	117365303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	117365303	G	C	117365303	3	2	38	1	0	0	0	0	1	0	0	0	4047	942	33	4	951	4	CTTNBP2	7	117365303	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	947840	117365303	41773360	38	2292											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151917756	151917756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	151917756	C	A	151917756	3	1	38	1	0	0	0	0	1	0	0	0	9629	912	32	4	11319	4	MLL3	7	151917756	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	34552453	151917756	7220907	39	2293											
RP1L1	94137	broad.mit.edu	37	8	10470573	10470573	+	Silent	SNP	C	C	T	rs73201157		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	10470573	C	T	10470573	2	4	38	1	0	0	0	0	0	0	0	1	13546	622	22	2		2	RP1L1	8	10470573	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08		10470573	135893449	40	2294											
FAM160B2	64760	broad.mit.edu	37	8	21953846	21953847	+	Splice_Site	DEL	AG	AG	-	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	-	21953847	AG	-	21953846	8	5	38	1	0	1	0	1	0	0	1	0	5475	434	15	0	133	0	FAM160B2	8	21953846	Splice_Site	DEL	AG	TCGA-A4-7997-01A-11D-2201-08	11483273	21953846	124410176	41	2295											
IDO2	169355	hgsc.bcm.edu	37	8	39862889	39862889	+	Silent	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	39862889	T	C	39862889	2	2	38	1	0	0	0	0	0	0	0	1	7509	1780	62	3		3	IDO2	8	39862889	Silent	SNP	T	TCGA-A4-7997-01A-11D-2201-08	17909043	39862889	106501133	42	2296											
CDH17	1015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95201459	95201459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	95201459	A	C	95201459	3	2	38	1	0	0	0	0	1	0	0	0	3104	101	4	5	2456	5	CDH17	8	95201459	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	55338570	95201459	51162563	43	2297											
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	16419221	16419221	+	Silent	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	16419221	A	G	16419221	2	3	38	1	0	0	0	0	0	0	0	1	1475	291	11	3		3	BNC2	9	16419221	Silent	SNP	A	TCGA-A4-7997-01A-11D-2201-08		16419221	124794210	44	2298											
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104449145	104449145	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	104449145	C	G	104449145	3	3	38	1	0	0	0	0	1	0	0	0	6790	623	22	4	2342	4	GRIN3A	9	104449145	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	88029924	104449145	36764286	45	2299											
SH2D3C	10044	hgsc.bcm.edu	37	9	130501166	130501166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	130501166	G	C	130501166	3	2	38	1	0	0	0	0	1	0	0	0	14247	1281	45	4	144	4	SH2D3C	9	130501166	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	26052021	130501166	10712265	46	2300											
MASTL	84930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27459483	27459483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	27459483	T	C	27459483	3	2	38	1	0	0	0	0	1	0	0	0	9335	1609	56	3	1625	3	MASTL	10	27459483	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		27459483	108075264	47	2301											
UNC5B	219699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	73055666	73055666	+	Silent	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	73055666	C	T	73055666	2	4	38	1	0	0	0	0	0	0	0	1	17004	842	30	2		2	UNC5B	10	73055666	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08	45596183	73055666	62479081	48	2302											
FUT11	170384	hgsc.bcm.edu	37	10	75532345	75532345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	75532345	T	C	75532345	3	2	38	1	0	0	0	0	1	0	0	0	6110	1522	53	3	256	3	FUT11	10	75532345	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	2476679	75532345	60002402	49	2303											
SEMA4G	57715	broad.mit.edu	37	10	102732887	102732887	+	Silent	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	102732887	G	A	102732887	2	1	38	1	0	0	0	0	0	0	0	1	14049	985	34	2		2	SEMA4G	10	102732887	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	27200542	102732887	32801860	50	2304											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17124313	17124313	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	17124313	A	C	17124313	3	2	38	1	0	0	0	0	1	0	0	0	11916	157	6	5	1353	5	PIK3C2A	11	17124313	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08		17124313	117882203	51	2305											
PLAC1L	219990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59811100	59811100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	59811100	G	A	59811100	3	1	38	1	0	0	0	0	1	0	0	0	12020	1290	45	2	229	2	PLAC1L	11	59811100	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	42686787	59811100	75195416	52	2306											
ENDOD1	23052	hgsc.bcm.edu;broad.mit.edu	37	11	94823276	94823276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	94823276	C	T	94823276	3	4	38	1	0	0	0	0	1	0	0	0	5116	797	28	2	187	2	ENDOD1	11	94823276	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	35012176	94823276	40183240	53	2307											
MMP8	4317	hgsc.bcm.edu	37	11	102589165	102589165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	102589165	T	C	102589165	3	2	38	1	0	0	0	0	1	0	0	0	9675	1435	50	3	663	3	MMP8	11	102589165	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	7765889	102589165	32417351	54	2308											
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108155202	108155202	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	108155202	T	C	108155202	5	2	38	1	0	0	0	0	0	0	1	0	1109	1652	57	3	4093	3	ATM	11	108155202	Splice_Site	SNP	T	TCGA-A4-7997-01A-11D-2201-08	5566037	108155202	26851314	55	2309											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6138619	6138619	+	Silent	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	6138619	G	A	6138619	2	1	38	1	0	0	0	0	0	0	0	1	17258	1020	36	2		2	VWF	12	6138619	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08		6138619	127713276	56	2310											
LRRC23	10233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7014840	7014840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	7014840	G	C	7014840	3	2	38	1	0	0	0	0	1	0	0	0	8985	1174	41	4	45	4	LRRC23	12	7014840	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	876221	7014840	126837055	57	2311											
C12orf39	80763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21679409	21679409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	21679409	G	A	21679409	3	1	38	1	0	0	0	0	1	0	0	0	1686	1290	45	2	5	2	C12orf39	12	21679409	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	14664569	21679409	112172486	58	2312											
CMAS	55907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	22218064	22218064	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	22218064	T	A	22218064	3	1	38	1	0	0	0	0	1	0	0	0	3577	1696	59	5	1154	5	CMAS	12	22218064	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	538655	22218064	111633831	59	2313											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49416134	49416134	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	49416134	A	C	49416134	3	2	38	1	0	0	0	0	1	0	0	0	9628	330	12	5	284	5	MLL2	12	49416134	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	27198070	49416134	84435761	60	2314											
CLIP1	6249	broad.mit.edu	37	12	122812693	122812694	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	122812694	-	T	122812693	7	5	38	1	0	1	1	0	0	0	0	0	3534	1377	48	0	1306	0	CLIP1	12	122812693	Frame_Shift_Ins	INS	-	TCGA-A4-7997-01A-11D-2201-08	73396559	122812693	11039202	61	2315											
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132405713	132405713	+	Silent	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	132405713	C	G	132405713	2	3	38	1	0	0	0	0	0	0	0	1	16987	610	22	4		4	ULK1	12	132405713	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08	9593020	132405713	1446182	62	2316											
SSTR1	6751	hgsc.bcm.edu	37	14	38678657	38678657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	38678657	C	G	38678657	3	3	38	1	0	0	0	0	1	0	0	0	15209	776	27	4	65	4	SSTR1	14	38678657	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08		38678657	68670883	63	2317											
EXOC5	10640	broad.mit.edu	37	14	57702498	57702498	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	-	57702498	A	-	57702498	7	5	38	1	0	1	0	1	0	0	0	0	5309	359	13	0	1574	0	EXOC5	14	57702498	Frame_Shift_Del	DEL	A	TCGA-A4-7997-01A-11D-2201-08	19023841	57702498	49647042	64	2318											
ARID4A	5926	hgsc.bcm.edu	37	14	58827678	58827678	+	Silent	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	58827678	G	T	58827678	2	4	38	1	0	0	0	0	0	0	0	1	919	1219	43	4		4	ARID4A	14	58827678	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	1125180	58827678	48521862	65	2319	30	2									
ARID4A	5926	hgsc.bcm.edu	37	14	58827680	58827680	+	Missense_Mutation	SNP	G	G	C	rs145426502	alternate_allele	TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	58827680	G	C	58827680	3	2	38	1	0	0	0	0	1	0	0	0	919	1174	41	4	2070	4	ARID4A	14	58827680	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	2	58827680	48521860	66	2320	30	2									
ARHGAP11A	9824	hgsc.bcm.edu;bcgsc.ca	37	15	32916475	32916475	+	Silent	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	32916475	C	T	32916475	2	4	38	1	0	0	0	0	0	0	0	1	863	842	30	2		2	ARHGAP11A	15	32916475	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08		32916475	69614917	67	2321											
CDAN1	146059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43023981	43023981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	43023981	C	T	43023981	3	4	38	1	0	0	0	0	1	0	0	0	3056	893	31	1	2179	1	CDAN1	15	43023981	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	10107506	43023981	59507411	68	2322											
GNB5	10681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52446239	52446239	+	Silent	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	52446239	C	T	52446239	2	4	38	1	0	0	0	0	0	0	0	1	6528	726	26	2		2	GNB5	15	52446239	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08	9422258	52446239	50085153	69	2323											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64021464	64021464	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	64021464	C	T	64021464	4	4	38	1	0	0	0	0	0	1	0	0	7064	595	21	2	11712	2	HERC1	15	64021464	Nonsense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	11575225	64021464	38509928	70	2324											
SYNM	23336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	99672333	99672333	+	Silent	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	99672333	G	T	99672333	2	4	38	1	0	0	0	0	0	0	0	1	15467	1335	47	4		4	SYNM	15	99672333	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	35650869	99672333	2859059	71	2325											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	396884	396884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	396884	T	G	396884	3	3	38	1	0	0	0	0	1	0	0	0	1236	1792	62	5	2486	5	AXIN1	16	396884	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		396884	89957869	72	2326											
HAGH	3029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1869997	1869997	+	Silent	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	1869997	A	G	1869997	2	3	38	1	0	0	0	0	0	0	0	1	6952	214	8	3		3	HAGH	16	1869997	Silent	SNP	A	TCGA-A4-7997-01A-11D-2201-08	1473113	1869997	88484756	73	2327											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3807907	3807907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	3807907	G	A	3807907	3	1	38	1	0	0	0	0	1	0	0	0	3863	1377	48	2	3872	2	CREBBP	16	3807907	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	1937910	3807907	86546846	74	2328											
GLYR1	84656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4895118	4895118	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	4895118	C	G	4895118	3	3	38	1	0	0	0	0	1	0	0	0	6490	661	23	4	1605	4	GLYR1	16	4895118	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	1087211	4895118	85459635	75	2329											
PDXDC1	23042	hgsc.bcm.edu;broad.mit.edu	37	16	15122744	15122744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	15122744	T	G	15122744	3	3	38	1	0	0	0	0	1	0	0	0	11703	1841	64	5	1272	5	PDXDC1	16	15122744	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	10227626	15122744	75232009	76	2330											
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23646368	23646368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	23646368	G	A	23646368	3	1	38	1	0	0	0	0	1	0	0	0	11413	942	33	2	2101	2	PALB2	16	23646368	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	8523624	23646368	66708385	77	2331											
CENPT	80152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67863889	67863889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	67863889	T	A	67863889	3	1	38	1	0	0	0	0	1	0	0	0	3244	1783	62	5	740	5	CENPT	16	67863889	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	44217521	67863889	22490864	78	2332											
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7755333	7755333	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	7755333	G	C	7755333	3	2	38	1	0	0	0	0	1	0	0	0	8145	1270	44	4	4288	4	KDM6B	17	7755333	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08		7755333	73439877	79	2333											
KRT33A	3883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39505660	39505660	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	39505660	C	G	39505660	3	3	38	1	0	0	0	0	1	0	0	0	8476	912	32	4	869	4	KRT33A	17	39505660	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	31750327	39505660	41689550	80	2334											
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45916322	45916322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	45916322	C	A	45916322	3	1	38	1	0	0	0	0	1	0	0	0	13952	739	26	4	704	4	SCRN2	17	45916322	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	6410662	45916322	35278888	81	2335											
AATK	9625	broad.mit.edu	37	17	79094413	79094413	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	79094413	A	C	79094413	3	2	38	1	0	0	0	0	1	0	0	0	26	188	7	5	817	5	AATK	17	79094413	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	33178091	79094413	2100797	82	2336											
NARF	26502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80443450	80443450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	80443450	G	A	80443450	3	1	38	1	0	0	0	0	1	0	0	0	10174	1058	37	1	1229	1	NARF	17	80443450	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	1349037	80443450	751760	83	2337											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	5394764	5394764	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	5394764	T	G	5394764	3	3	38	1	0	0	0	0	1	0	0	0	5156	1841	64	5	85	5	EPB41L3	18	5394764	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		5394764	72682484	84	2338											
MEP1B	4225	broad.mit.edu;bcgsc.ca	37	18	29787415	29787415	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	-	29787415	A	-	29787415	7	5	38	1	0	1	0	1	0	0	0	0	9483	246	9	0	778	0	MEP1B	18	29787415	Frame_Shift_Del	DEL	A	TCGA-A4-7997-01A-11D-2201-08	24392651	29787415	48289833	85	2339											
STK11	6794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1223168	1223168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	1223168	C	T	1223168	3	4	38	1	0	0	0	0	1	0	0	0	15299	739	26	2	1135	2	STK11	19	1223168	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08		1223168	57905815	86	2340											
ZNF433	163059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12126384	12126384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	12126384	G	T	12126384	3	4	38	1	0	0	0	0	1	0	0	0	17919	942	33	4	727	4	ZNF433	19	12126384	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	10903216	12126384	47002599	87	2341											
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18368726	18368726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	18368726	C	G	18368726	3	3	38	1	0	0	0	0	1	0	0	0	8258	739	26	4	739	4	KIAA1683	19	18368726	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	6242342	18368726	40760257	88	2342											
ZNF681	148213	hgsc.bcm.edu	37	19	23927139	23927139	+	Missense_Mutation	SNP	T	T	G	rs76432318	alternate_allele	TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	23927139	T	G	23927139	3	3	38	1	0	0	0	0	1	0	0	0	18100	1821	63	5	728	5	ZNF681	19	23927139	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	5558413	23927139	35201844	89	2343											
U2AF2	11338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56180114	56180114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	56180114	G	A	56180114	3	1	38	1	0	0	0	0	1	0	0	0	16835	1232	43	2	935	2	U2AF2	19	56180114	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	32252975	56180114	2948869	90	2344											
TBC1D20	128637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	419913	419913	+	Silent	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	419913	G	T	419913	2	4	38	1	0	0	0	0	0	0	0	1	15621	1161	41	4		4	TBC1D20	20	419913	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08		419913	62605607	91	2345											
FAM65C	140876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49219116	49219116	+	Silent	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	49219116	G	A	49219116	2	1	38	1	0	0	0	0	0	0	0	1	5608	1277	45	2		2	FAM65C	20	49219116	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	48799203	49219116	13806404	92	2346											
CYP24A1	1591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	52773943	52773943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	52773943	T	C	52773943	3	2	38	1	0	0	0	0	1	0	0	0	4156	1464	51	3	134	3	CYP24A1	20	52773943	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	3554827	52773943	10251577	93	2347											
LIME1	54923	broad.mit.edu	37	20	62369217	62369217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	T	62369217	C	T	62369217	3	4	38	1	0	0	0	0	1	0	0	0	8807	759	27	1	148	1	LIME1	20	62369217	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	9595274	62369217	656303	94	2348											
APP	351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	27348294	27348294	+	Silent	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	27348294	A	C	27348294	2	2	38	1	0	0	0	0	0	0	0	1	815	407	15	5		5	APP	21	27348294	Silent	SNP	A	TCGA-A4-7997-01A-11D-2201-08		27348294	20781601	95	2349											
COL18A1	80781	hgsc.bcm.edu	37	21	46930115	46930115	+	Silent	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	A	46930115	G	A	46930115	2	1	38	1	0	0	0	0	0	0	0	1	3677	991	35	2		2	COL18A1	21	46930115	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	19581821	46930115	1199780	96	2350											
TRIOBP	11078	hgsc.bcm.edu	37	22	38150890	38150890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	C	38150890	T	C	38150890	3	2	38	1	0	0	0	0	1	0	0	0	16565	1551	54	3	5615	3	TRIOBP	22	38150890	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		38150890	13153676	97	2351											
ARAF	369	hgsc.bcm.edu	37	X	47426120	47426120	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	47426120	T	G	47426120	3	3	38	1	0	0	0	0	1	0	0	0	837	1667	58	5	662	5	ARAF	23	47426120	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		47426120	107844440	98	2352											
TRO	7216	hgsc.bcm.edu	37	X	54948719	54948719	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	G	54948719	T	G	54948719	3	3	38	1	0	0	0	0	1	0	0	0	16586	1493	52	5	42	5	TRO	23	54948719	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	7522599	54948719	100321841	99	2353											
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	24416117	24416117	+	Missense_Mutation	SNP	C	C	G	rs201031583	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	24416117	C	G	24416117	3	3	39	1	0	0	0	0	1	0	0	0	10100	710	25	4	2884	4	MYOM3	1	24416117	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08		24416117	224834504	1	2354											
L1TD1	54596	hgsc.bcm.edu	37	1	62675665	62675665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	62675665	G	A	62675665	3	1	39	1	0	0	0	0	1	0	0	0	8596	1175	41	2	1225	2	L1TD1	1	62675665	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	38259548	62675665	186574956	2	2355											
RBM15	64783	broad.mit.edu	37	1	110883162	110883162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	110883162	G	T	110883162	3	4	39	1	0	0	0	0	1	0	0	0	13129	1232	43	4	1137	4	RBM15	1	110883162	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	48207497	110883162	138367459	3	2356											
NBPF9	400818	broad.mit.edu	37	1	144615252	144615252	+	Missense_Mutation	SNP	T	T	A	rs79161030	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	144615252	T	A	144615252	3	1	39	1	0	0	0	0	1	0	0	0	10206	1464	51	5	124	5	NBPF9	1	144615252	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	33732090	144615252	104635369	4	2357											
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145532515	145532515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	145532515	G	A	145532515	3	1	39	1	0	0	0	0	1	0	0	0	7880	942	33	2	1002	2	ITGA10	1	145532515	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	917263	145532515	103718106	5	2358											
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151109386	151109386	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	151109386	C	T	151109386	2	4	39	1	0	0	0	0	0	0	0	1	14054	813	29	2		2	SEMA6C	1	151109386	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	5576871	151109386	98141235	6	2359											
HRNR	388697	hgsc.bcm.edu	37	1	152190382	152190382	+	Missense_Mutation	SNP	A	A	C	rs76749074		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	152190382	A	C	152190382	3	2	39	1	0	0	0	0	1	0	0	0	7366	98	4	5	4833	5	HRNR	1	152190382	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	1080996	152190382	97060239	7	2360											
PEAR1	375033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156877993	156877993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	156877993	C	T	156877993	3	4	39	1	0	0	0	0	1	0	0	0	11719	652	23	1	1006	1	PEAR1	1	156877993	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	4687611	156877993	92372628	8	2361											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167096129	167096129	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	167096129	A	G	167096129	2	3	39	1	0	0	0	0	0	0	0	1	4826	175	7	3		3	DUSP27	1	167096129	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10218136	167096129	82154492	9	2362											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169100749	169100768	+	Frame_Shift_Del	DEL	CGTTTTCAGGGACGTTTTGA	CGTTTTCAGGGACGTTTTGA	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	CGTTTTCAGGGACGTTTTGA	CGTTTTCAGGGACGTTTTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	-	169100768	CGTTTTCAGGGACGTTTTGA	-	169100749	7	5	39	1	0	1	0	1	0	0	0	0	1132	652	23	0	890	0	ATP1B1	1	169100749	Frame_Shift_Del	DEL	CGTTTTCAGGGACGTTTTGA	TCGA-A4-8098-01A-11D-2396-08	2004620	169100749	80149872	10	2363											
C1orf112	55732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169806133	169806133	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	169806133	C	T	169806133	2	4	39	1	0	0	0	0	0	0	0	1	1987	668	24	2		2	C1orf112	1	169806133	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	705384	169806133	79444488	11	2364											
PPFIA4	8497	hgsc.bcm.edu	37	1	203025587	203025587	+	Silent	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	203025587	C	A	203025587	2	1	39	1	0	0	0	0	0	0	0	1	12319	759	27	4		4	PPFIA4	1	203025587	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	33219454	203025587	46225034	12	2365											
PLEKHA6	22874	hgsc.bcm.edu	37	1	204219693	204219693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	204219693	A	G	204219693	3	3	39	1	0	0	0	0	1	0	0	0	12067	372	13	3	1624	3	PLEKHA6	1	204219693	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	1194106	204219693	45030928	13	2366											
OTOF	9381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	26693573	26693574	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	26693574	-	C	26693573	7	5	39	1	0	1	1	0	0	0	0	0	11310	1551	54	0	2327	0	OTOF	2	26693573	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08		26693573	216505800	14	2367											
MAPRE3	22924	bcgsc.ca	37	2	27248500	27248500	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	27248500	C	T	27248500	2	4	39	1	0	0	0	0	0	0	0	1	9303	726	26	2		2	MAPRE3	2	27248500	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	554927	27248500	215950873	15	2368											
EIF2AK2	5610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37365711	37365711	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	37365711	G	A	37365711	2	1	39	1	0	0	0	0	0	0	0	1	4999	987	35	2		2	EIF2AK2	2	37365711	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	10117211	37365711	205833662	16	2369											
ATOH8	84913	hgsc.bcm.edu	37	2	85981696	85981696	+	Silent	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	85981696	G	T	85981696	2	4	39	1	0	0	0	0	0	0	0	1	1114	1074	38	4		4	ATOH8	2	85981696	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	48615985	85981696	157217677	17	2370											
GPAT2	150763	hgsc.bcm.edu	37	2	96687959	96687959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	96687959	A	T	96687959	3	4	39	1	0	0	0	0	1	0	0	0	6596	188	7	5	55	5	GPAT2	2	96687959	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10706263	96687959	146511414	18	2371											
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97428127	97428127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	97428127	A	G	97428127	3	3	39	1	0	0	0	0	1	0	0	0	3617	304	11	3	1393	3	CNNM4	2	97428127	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	740168	97428127	145771246	19	2372											
TMEM131	23505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	98413329	98413329	+	Silent	SNP	T	T	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	98413329	T	A	98413329	2	1	39	1	0	0	0	0	0	0	0	1	16056	1451	51	5		5	TMEM131	2	98413329	Silent	SNP	T	TCGA-A4-8098-01A-11D-2396-08	985202	98413329	144786044	20	2373											
RGPD3	653489	broad.mit.edu;bcgsc.ca	37	2	107032393	107032393	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	107032393	G	A	107032393	2	1	39	1	0	0	0	0	0	0	0	1	13300	1277	45	2		2	RGPD3	2	107032393	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	8619064	107032393	136166980	21	2374											
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	158115698	158115699	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	158115699	-	T	158115698	7	5	39	1	0	1	1	0	0	0	0	0	6223	668	24	0	1106	0	GALNT5	2	158115698	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	51083305	158115698	85083675	22	2375											
TTN	7273	hgsc.bcm.edu	37	2	179460425	179460425	+	Missense_Mutation	SNP	T	T	A	rs201541213		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	179460425	T	A	179460425	3	1	39	1	0	0	0	0	1	0	0	0	16747	1406	49	5	50595	5	TTN	2	179460425	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	21344727	179460425	63738948	23	2376											
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238280361	238280361	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	238280361	C	T	238280361	2	4	39	1	0	0	0	0	0	0	0	1	3703	523	19	1		1	COL6A3	2	238280361	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	58819936	238280361	4919012	24	2377											
CAPN7	23473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	15288921	15288921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	15288921	A	G	15288921	3	3	39	1	0	0	0	0	1	0	0	0	2633	449	16	3	2235	3	CAPN7	3	15288921	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08		15288921	182733509	25	2378											
ARPP21	10777	bcgsc.ca	37	3	35756938	35756938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	35756938	G	T	35756938	3	4	39	1	0	0	0	0	1	0	0	0	978	1319	46	4	956	4	ARPP21	3	35756938	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	20468017	35756938	162265492	26	2379											
ACAA1	30	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38168151	38168151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	38168151	T	G	38168151	3	3	39	1	0	0	0	0	1	0	0	0	104	1435	50	5	627	5	ACAA1	3	38168151	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	2411213	38168151	159854279	27	2380											
TGM4	7047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	44926858	44926858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	44926858	G	T	44926858	3	4	39	1	0	0	0	0	1	0	0	0	15844	1087	38	4	67	4	TGM4	3	44926858	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	6758707	44926858	153095572	28	2381											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47127778	47127778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	47127778	C	A	47127778	3	1	39	1	0	0	0	0	1	0	0	0	14144	564	20	4	2434	4	SETD2	3	47127778	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	2200920	47127778	150894652	29	2382											
CADPS	8618	hgsc.bcm.edu	37	3	62499343	62499343	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	62499343	A	G	62499343	2	3	39	1	0	0	0	0	0	0	0	1	2572	69	3	3		3	CADPS	3	62499343	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	15371565	62499343	135523087	30	2383											
ZNF595	152687	bcgsc.ca	37	4	86145	86145	+	RNA	SNP	A	A	G	rs200927625		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	86145	A	G	86145	1	3	39	0	1	0	0	0	0	0	0	0	18037	381	14	3		3	ZNF595	4	86145	RNA	SNP	A	TCGA-A4-8098-01A-11D-2396-08		86145	191068131	31	2384											
TMEM175	84286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	947053	947053	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	947053	C	G	947053	3	3	39	1	0	0	0	0	1	0	0	0	16103	912	32	4	564	4	TMEM175	4	947053	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	860908	947053	190207223	32	2385											
DRD5	1816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	9784197	9784197	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	9784197	A	T	9784197	3	4	39	1	0	0	0	0	1	0	0	0	4762	179	7	5	546	5	DRD5	4	9784197	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	8837144	9784197	181370079	33	2386											
TMPRSS11F	389208	hgsc.bcm.edu	37	4	68939702	68939702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	68939702	G	C	68939702	3	2	39	1	0	0	0	0	1	0	0	0	16255	942	33	4	1036	4	TMPRSS11F	4	68939702	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	59155505	68939702	122214574	34	2387											
MRPL1	65008	hgsc.bcm.edu	37	4	78804410	78804411	+	Missense_Mutation	DNP	CA	CA	AC	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	AC	78804411	CA	AC	78804410	3	1	39	1	0	0	0	0	1	0	0	0	9781	478	17	4	168	4	MRPL1	4	78804410	Missense_Mutation	DNP	CA	TCGA-A4-8098-01A-11D-2396-08	9864708	78804410	112349866	35	2388											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114232517	114232517	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	114232517	T	A	114232517	3	1	39	1	0	0	0	0	1	0	0	0	621	1490	52	5	2774	5	ANK2	4	114232517	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	35428107	114232517	76921759	36	2389											
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122825594	122825594	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	122825594	A	C	122825594	3	2	39	1	0	0	0	0	1	0	0	0	16591	330	12	5	649	5	TRPC3	4	122825594	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	8593077	122825594	68328682	37	2390											
SPOCK3	50859	hgsc.bcm.edu	37	4	167656109	167656109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	167656109	T	C	167656109	3	2	39	1	0	0	0	0	1	0	0	0	15093	1435	50	3	40	3	SPOCK3	4	167656109	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	44830515	167656109	23498167	38	2391											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	175898831	175898832	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	175898832	-	A	175898831	7	5	39	1	0	1	1	0	0	0	0	0	247	1175	41	0	2157	0	ADAM29	4	175898831	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	8242722	175898831	15255445	39	2392											
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10411600	10411600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	10411600	G	A	10411600	3	1	39	1	0	0	0	0	1	0	0	0	9312	1232	43	2	1921	2	MARCH6	5	10411600	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08		10411600	170503660	40	2393											
CENPH	64946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	68505552	68505552	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	-	68505552	A	-	68505552	7	5	39	1	0	1	0	1	0	0	0	0	3234	363	13	0	704	0	CENPH	5	68505552	Frame_Shift_Del	DEL	A	TCGA-A4-8098-01A-11D-2396-08	58093952	68505552	112409708	41	2394											
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74026107	74026107	+	Silent	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	74026107	G	T	74026107	2	4	39	1	0	0	0	0	0	0	0	1	6349	1164	41	4		4	GFM2	5	74026107	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	5520555	74026107	106889153	42	2395											
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74981182	74981182	+	Silent	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	74981182	G	C	74981182	2	2	39	1	0	0	0	0	0	0	0	1	12184	1219	43	4		4	POC5	5	74981182	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	955075	74981182	105934078	43	2396											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	80160742	80160743	+	Frame_Shift_Ins	INS	-	-	GAAA	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	GAAA	80160743	-	GAAA	80160742	7	5	39	1	0	1	1	0	0	0	0	0	9878	1461	51	0	3197	0	MSH3	5	80160742	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	5179560	80160742	100754518	44	2397											
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	98195710	98195710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	98195710	T	C	98195710	3	2	39	1	0	0	0	0	1	0	0	0	3325	1406	49	3	658	3	CHD1	5	98195710	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	18034968	98195710	82719550	45	2398											
GIN1	54826	hgsc.bcm.edu	37	5	102442521	102442521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	102442521	G	A	102442521	3	1	39	1	0	0	0	0	1	0	0	0	6393	1348	47	2	1360	2	GIN1	5	102442521	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	4246811	102442521	78472739	46	2399											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140724210	140724210	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	140724210	A	T	140724210	4	4	39	1	0	0	0	0	0	1	0	0	11562	247	9	5	612	5	PCDHGA3	5	140724210	Nonsense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	38281689	140724210	40191050	47	2400											
PCDH1	5097	hgsc.bcm.edu	37	5	141233788	141233788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	141233788	C	T	141233788	3	4	39	1	0	0	0	0	1	0	0	0	11513	652	23	1	184	1	PCDH1	5	141233788	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	509578	141233788	39681472	48	2401											
MAML1	9794	hgsc.bcm.edu	37	5	179160185	179160185	+	Silent	SNP	C	C	T	rs76621265		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	179160185	C	T	179160185	2	4	39	1	0	0	0	0	0	0	0	1	9212	726	26	2		2	MAML1	5	179160185	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	37926397	179160185	1755075	49	2402											
SLC26A8	116369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	35923086	35923086	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	-	35923086	T	-	35923086	7	5	39	1	0	1	0	1	0	0	0	0	14536	1725	60	0	853	0	SLC26A8	6	35923086	Frame_Shift_Del	DEL	T	TCGA-A4-8098-01A-11D-2396-08		35923086	135191981	50	2403											
SLC22A7	10864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43266249	43266249	+	Silent	SNP	G	G	A	rs140596352	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	43266249	G	A	43266249	2	1	39	1	0	0	0	0	0	0	0	1	14472	1306	46	2		2	SLC22A7	6	43266249	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	7343163	43266249	127848818	51	2404											
LRRC1	55227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53660212	53660212	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	53660212	A	T	53660212	3	4	39	1	0	0	0	0	1	0	0	0	8973	318	11	5	160	5	LRRC1	6	53660212	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10393963	53660212	117454855	52	2405											
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	74407130	74407130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	74407130	T	C	74407130	3	2	39	1	0	0	0	0	1	0	0	0	2965	1725	60	3	88	3	CD109	6	74407130	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	20746918	74407130	96707937	53	2406											
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	79724879	79724879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	79724879	G	A	79724879	3	1	39	1	0	0	0	0	1	0	0	0	11849	942	33	2	4125	2	PHIP	6	79724879	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	5317749	79724879	91390188	54	2407											
TNRC18	84629	broad.mit.edu	37	7	5396802	5396803	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	5396803	-	G	5396802	7	5	39	1	0	1	1	0	0	0	0	0	16351	1821	63	0	4027	0	TNRC18	7	5396802	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08		5396802	153741861	55	2408											
DNAH11	8701	broad.mit.edu;bcgsc.ca	37	7	21908512	21908512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	21908512	G	T	21908512	3	4	39	1	0	0	0	0	1	0	0	0	4601	1174	41	4	12182	4	DNAH11	7	21908512	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	16511710	21908512	137230151	56	2409											
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23306207	23306207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	23306207	C	A	23306207	3	1	39	1	0	0	0	0	1	0	0	0	6627	594	21	4	1152	4	GPNMB	7	23306207	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	1397695	23306207	135832456	57	2410											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	42063171	42063171	+	Missense_Mutation	SNP	C	C	T	rs35488756	byfrequency;alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	42063171	C	T	42063171	3	4	39	1	0	0	0	0	1	0	0	0	6446	681	24	2	3373	2	GLI3	7	42063171	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	18756964	42063171	117075492	58	2411											
CLIP2	7461	broad.mit.edu	37	7	73790237	73790239	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	-	73790239	GTC	-	73790237	7	5	39	1	0	1	0	1	0	0	0	0	3535	1020	36	0	1540	0	CLIP2	7	73790237	In_Frame_Del	DEL	GTC	TCGA-A4-8098-01A-11D-2396-08	31727066	73790237	85348426	59	2412											
PILRA	29992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99971777	99971777	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	99971777	T	G	99971777	3	3	39	1	0	0	0	0	1	0	0	0	11932	1580	55	5	181	5	PILRA	7	99971777	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	26181540	99971777	59166886	60	2413											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121651018	121651018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	121651018	G	C	121651018	3	2	39	1	0	0	0	0	1	0	0	0	12827	943	33	4	1964	4	PTPRZ1	7	121651018	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	21679241	121651018	37487645	61	2414											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	71039066	71039067	+	Frame_Shift_Ins	INS	-	-	AAAC	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	AAAC	71039067	-	AAAC	71039066	7	5	39	1	0	1	1	0	0	0	0	0	10236	1174	41	0	516	0	NCOA2	8	71039066	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08		71039066	75324956	62	2415											
DENND3	22898	hgsc.bcm.edu	37	8	142146788	142146788	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	142146788	C	G	142146788	3	3	39	1	0	0	0	0	1	0	0	0	4434	711	25	4	45	4	DENND3	8	142146788	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	71107722	142146788	4217234	63	2416											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144942527	144942527	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	144942527	C	G	144942527	3	3	39	1	0	0	0	0	1	0	0	0	5192	855	30	4	2371	4	EPPK1	8	144942527	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	2795739	144942527	1421495	64	2417											
DNM1	1759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130985083	130985083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	130985083	T	A	130985083	3	1	39	1	0	0	0	0	1	0	0	0	4672	1461	51	5	1174	5	DNM1	9	130985083	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08		130985083	10228348	65	2418											
ADAMTS13	11093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136305499	136305499	+	Silent	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	136305499	G	T	136305499	2	4	39	1	0	0	0	0	0	0	0	1	258	1161	41	4		4	ADAMTS13	9	136305499	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	5320416	136305499	4907932	66	2419											
NOTCH1	4851	hgsc.bcm.edu	37	9	139391440	139391440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	139391440	C	T	139391440	3	4	39	1	0	0	0	0	1	0	0	0	10554	739	26	2	920	2	NOTCH1	9	139391440	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	3085941	139391440	1821991	67	2420											
SLC18A3	6572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50819621	50819621	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	50819621	G	C	50819621	3	2	39	1	0	0	0	0	1	0	0	0	14440	1232	43	4	837	4	SLC18A3	10	50819621	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08		50819621	84715126	68	2421											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70450862	70450862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	70450862	T	G	70450862	3	3	39	1	0	0	0	0	1	0	0	0	15781	1493	52	5	5744	5	TET1	10	70450862	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	19631241	70450862	65083885	69	2422											
H2AFY2	55506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71868875	71868875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	71868875	C	A	71868875	3	1	39	1	0	0	0	0	1	0	0	0	6937	479	17	4	891	4	H2AFY2	10	71868875	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	1418013	71868875	63665872	70	2423											
TRIM8	81603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104415049	104415049	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	104415049	G	A	104415049	2	1	39	1	0	0	0	0	0	0	0	1	16560	1103	39	1		1	TRIM8	10	104415049	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	32546174	104415049	31119698	71	2424											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115372127	115372127	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	115372127	C	G	115372127	3	3	39	1	0	0	0	0	1	0	0	0	10645	768	27	4	1880	4	NRAP	10	115372127	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	10957078	115372127	20162620	72	2425											
UEVLD	55293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18568448	18568448	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	-	18568448	G	-	18568448	7	5	39	1	0	1	0	1	0	0	0	0	16945	991	35	0	570	0	UEVLD	11	18568448	Frame_Shift_Del	DEL	G	TCGA-A4-8098-01A-11D-2396-08		18568448	116438068	73	2426											
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	21594920	21594920	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	21594920	A	T	21594920	3	4	39	1	0	0	0	0	1	0	0	0	10340	333	12	5	2421	5	NELL1	11	21594920	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	3026472	21594920	113411596	74	2427											
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	27412675	27412676	+	In_Frame_Ins	INS	-	-	AAG	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	AAG	27412676	-	AAG	27412675	7	5	39	1	0	1	1	0	0	0	0	0	8763	835	29	0	2548	0	LGR4	11	27412675	In_Frame_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	5817755	27412675	107593841	75	2428											
IMMP1L	196294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	31482191	31482191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	31482191	T	C	31482191	3	2	39	1	0	0	0	0	1	0	0	0	7723	1464	51	3	340	3	IMMP1L	11	31482191	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	4069516	31482191	103524325	76	2429											
CCDC73	493860	hgsc.bcm.edu	37	11	32676507	32676507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	32676507	T	C	32676507	3	2	39	1	0	0	0	0	1	0	0	0	2848	1606	56	3	2618	3	CCDC73	11	32676507	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	1194316	32676507	102330009	77	2430											
PRR5L	79899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	36472765	36472765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	36472765	C	T	36472765	3	4	39	1	0	0	0	0	1	0	0	0	12612	826	29	2	624	2	PRR5L	11	36472765	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	3796258	36472765	98533751	78	2431											
CKAP5	9793	broad.mit.edu	37	11	46804912	46804912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	46804912	A	G	46804912	3	3	39	1	0	0	0	0	1	0	0	0	3447	275	10	3	4045	3	CKAP5	11	46804912	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10332147	46804912	88201604	79	2432											
GSTP1	2950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67352235	67352235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	67352235	G	A	67352235	3	1	39	1	0	0	0	0	1	0	0	0	6851	1087	38	1	238	1	GSTP1	11	67352235	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	20547323	67352235	67654281	80	2433											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877724	82877724	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	82877724	A	G	82877724	2	3	39	1	0	0	0	0	0	0	0	1	11580	11	1	3		3	PCF11	11	82877724	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	15525489	82877724	52128792	81	2434											
PCF11	51585	hgsc.bcm.edu	37	11	82878487	82878487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	82878487	A	G	82878487	3	3	39	1	0	0	0	0	1	0	0	0	11580	391	14	3	2058	3	PCF11	11	82878487	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	763	82878487	52128029	82	2435											
PCSK7	9159	hgsc.bcm.edu	37	11	117077797	117077797	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	117077797	G	A	117077797	2	1	39	1	0	0	0	0	0	0	0	1	11612	1280	45	2		2	PCSK7	11	117077797	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	34199310	117077797	17928719	83	2436											
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128840894	128840894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	128840894	C	T	128840894	3	4	39	1	0	0	0	0	1	0	0	0	881	652	23	1	2095	1	ARHGAP32	11	128840894	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	11763097	128840894	6165622	84	2437											
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4737430	4737430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	4737430	T	G	4737430	3	3	39	1	0	0	0	0	1	0	0	0	452	1841	64	5	1931	5	AKAP3	12	4737430	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08		4737430	129114465	85	2438											
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54856511	54856511	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	54856511	T	A	54856511	5	1	39	1	0	0	0	0	0	0	1	0	6893	1594	55	5	276	5	GTSF1	12	54856511	Splice_Site	SNP	T	TCGA-A4-8098-01A-11D-2396-08	50119081	54856511	78995384	86	2439											
WIF1	11197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	65460514	65460514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	65460514	G	T	65460514	3	4	39	1	0	0	0	0	1	0	0	0	17378	1000	35	4	522	4	WIF1	12	65460514	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	10604003	65460514	68391381	87	2440											
DDX51	317781	hgsc.bcm.edu	37	12	132628412	132628412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	132628412	C	T	132628412	3	4	39	1	0	0	0	0	1	0	0	0	4371	797	28	2	1709	2	DDX51	12	132628412	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	67167898	132628412	1223483	88	2441											
PARP4	143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25029240	25029240	+	Silent	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	25029240	T	C	25029240	2	2	39	1	0	0	0	0	0	0	0	1	11470	1451	51	3		3	PARP4	13	25029240	Silent	SNP	T	TCGA-A4-8098-01A-11D-2396-08		25029240	90140638	89	2442											
CPB2	1361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	46658419	46658419	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	46658419	A	C	46658419	3	2	39	1	0	0	0	0	1	0	0	0	3799	11	1	5	1097	5	CPB2	13	46658419	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	21629179	46658419	68511459	90	2443											
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24032848	24032848	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	24032848	C	T	24032848	5	4	39	1	0	0	0	0	0	0	1	0	733	695	24	2	1165	2	AP1G2	14	24032848	Splice_Site	SNP	C	TCGA-A4-8098-01A-11D-2396-08		24032848	83316692	91	2444											
TGM1	7051	hgsc.bcm.edu	37	14	24718666	24718666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	24718666	G	T	24718666	3	4	39	1	0	0	0	0	1	0	0	0	15841	962	34	4	150	4	TGM1	14	24718666	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	685818	24718666	82630874	92	2445											
NEK9	91754	hgsc.bcm.edu	37	14	75593497	75593497	+	Missense_Mutation	SNP	C	C	G	rs78524303		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	75593497	C	G	75593497	3	3	39	1	0	0	0	0	1	0	0	0	10338	739	26	4	2899	4	NEK9	14	75593497	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	50874831	75593497	31756043	93	2446											
AHNAK2	113146	ucsc.edu	37	14	105410343	105410343	+	Silent	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	105410343	C	A	105410343	2	1	39	1	0	0	0	0	0	0	0	1	415	465	17	4		4	AHNAK2	14	105410343	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	29816846	105410343	1939197	94	2447											
SERINC4	619189	ucsc.edu;bcgsc.ca	37	15	44090645	44090645	+	Silent	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	44090645	A	T	44090645	2	4	39	1	0	0	0	0	0	0	0	1	14095	261	9	5		5	SERINC4	15	44090645	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08		44090645	58440747	95	2448											
CSPG4	1464	hgsc.bcm.edu	37	15	75985432	75985432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	75985432	C	A	75985432	3	1	39	1	0	0	0	0	1	0	0	0	3962	796	28	4	6773	4	CSPG4	15	75985432	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	31894787	75985432	26545960	96	2449											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101529603	101529603	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	101529603	A	G	101529603	2	3	39	1	0	0	0	0	0	0	0	1	9039	202	7	3		3	LRRK1	15	101529603	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	25544171	101529603	1001789	97	2450											
RAB11FIP3	9727	hgsc.bcm.edu	37	16	570232	570232	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	570232	C	T	570232	2	4	39	1	0	0	0	0	0	0	0	1	12908	755	27	1		1	RAB11FIP3	16	570232	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08		570232	89784521	98	2451											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15880497	15880497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	15880497	G	T	15880497	3	4	39	1	0	0	0	0	1	0	0	0	10038	1377	48	4	5503	4	MYH11	16	15880497	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	15310265	15880497	74474256	99	2452											
ARL6IP1	23204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18810023	18810023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	18810023	A	G	18810023	3	3	39	1	0	0	0	0	1	0	0	0	942	202	7	3	461	3	ARL6IP1	16	18810023	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	2929526	18810023	71544730	100	2453											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	18882177	18882177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	18882177	G	A	18882177	3	1	39	1	0	0	0	0	1	0	0	0	14808	1319	46	2	8837	2	SMG1	16	18882177	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	72154	18882177	71472576	101	2454											
SEPHS2	22928	broad.mit.edu	37	16	30456699	30456699	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	30456699	A	T	30456699	3	4	39	1	0	0	0	0	1	0	0	0	14068	333	12	5	1000	5	SEPHS2	16	30456699	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	11574522	30456699	59898054	102	2455											
PRSS53	339105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31098021	31098021	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	31098021	C	T	31098021	2	4	39	1	0	0	0	0	0	0	0	1	12642	796	28	2		2	PRSS53	16	31098021	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	641322	31098021	59256732	103	2456											
OGFOD1	55239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	56485680	56485680	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	56485680	T	C	56485680	5	2	39	1	0	0	0	0	0	0	1	0	10848	1652	57	3	158	3	OGFOD1	16	56485680	Splice_Site	SNP	T	TCGA-A4-8098-01A-11D-2396-08	25387659	56485680	33869073	104	2457											
DDX19B	11269	hgsc.bcm.edu	37	16	70346536	70346536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	70346536	G	C	70346536	3	2	39	1	0	0	0	0	1	0	0	0	4349	943	33	4	88	4	DDX19B	16	70346536	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	13860856	70346536	20008217	105	2458											
TXNL4B	54957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72120699	72120699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	72120699	G	T	72120699	3	4	39	1	0	0	0	0	1	0	0	0	16818	942	33	4	166	4	TXNL4B	16	72120699	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	1774163	72120699	18234054	106	2459											
HSBP1	3281	hgsc.bcm.edu	37	16	83842931	83842931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	83842931	T	C	83842931	3	2	39	1	0	0	0	0	1	0	0	0	7380	1493	52	3	144	3	HSBP1	16	83842931	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	11722232	83842931	6511822	107	2460											
SLC2A4	6517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7189210	7189210	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	7189210	G	C	7189210	3	2	39	1	0	0	0	0	1	0	0	0	14559	1232	43	4	1347	4	SLC2A4	17	7189210	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08		7189210	74006000	108	2461											
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7399344	7399344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	7399344	C	G	7399344	3	3	39	1	0	0	0	0	1	0	0	0	12221	623	22	4	184	4	POLR2A	17	7399344	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	210134	7399344	73795866	109	2462											
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu	37	17	34077159	34077159	+	Silent	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	34077159	G	C	34077159	2	2	39	1	0	0	0	0	0	0	0	1	6254	1103	39	4		4	GAS2L2	17	34077159	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	26677815	34077159	47118051	110	2463											
TAF15	8148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34172014	34172014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	34172014	G	T	34172014	3	4	39	1	0	0	0	0	1	0	0	0	15530	1000	35	4	1769	4	TAF15	17	34172014	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	94855	34172014	47023196	111	2464											
RPRML	388394	hgsc.bcm.edu;broad.mit.edu	37	17	45056017	45056017	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	45056017	C	T	45056017	2	4	39	1	0	0	0	0	0	0	0	1	13632	465	17	2		2	RPRML	17	45056017	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	10884003	45056017	36139193	112	2465											
LRRC46	90506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45914207	45914207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	45914207	G	A	45914207	3	1	39	1	0	0	0	0	1	0	0	0	9010	1319	46	2	717	2	LRRC46	17	45914207	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	858190	45914207	35281003	113	2466											
ACSF2	80221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48549793	48549793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	48549793	G	A	48549793	3	1	39	1	0	0	0	0	1	0	0	0	175	1116	39	1	1374	1	ACSF2	17	48549793	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	2635586	48549793	32645417	114	2467											
PITPNC1	26207	hgsc.bcm.edu;broad.mit.edu	37	17	65665781	65665781	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	65665781	T	C	65665781	5	2	39	1	0	0	0	0	0	0	1	0	11956	1652	57	3	646	3	PITPNC1	17	65665781	Splice_Site	SNP	T	TCGA-A4-8098-01A-11D-2396-08	17115988	65665781	15529429	115	2468											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76491997	76491997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	76491997	C	G	76491997	3	3	39	1	0	0	0	0	1	0	0	0	4603	661	23	4	7701	4	DNAH17	17	76491997	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	10826216	76491997	4703213	116	2469											
GNAL	2774	hgsc.bcm.edu	37	18	11689823	11689823	+	Silent	SNP	G	G	A	rs181443061		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	11689823	G	A	11689823	2	1	39	1	0	0	0	0	0	0	0	1	6514	991	35	2		2	GNAL	18	11689823	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08		11689823	66387425	117	2470											
TJP3	27134	ucsc.edu	37	19	3730391	3730391	+	Silent	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	3730391	C	G	3730391	2	3	39	1	0	0	0	0	0	0	0	1	15943	581	21	4		4	TJP3	19	3730391	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08		3730391	55398592	118	2471											
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7615223	7615223	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	7615223	G	A	7615223	2	1	39	1	0	0	0	0	0	0	0	1	12176	1074	38	1		1	PNPLA6	19	7615223	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	3884832	7615223	51513760	119	2472											
STXBP2	6813	hgsc.bcm.edu	37	19	7712339	7712339	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	7712339	G	C	7712339	3	2	39	1	0	0	0	0	1	0	0	0	15365	933	33	4	1708	4	STXBP2	19	7712339	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	97116	7712339	51416644	120	2473											
JUNB	3726	hgsc.bcm.edu;broad.mit.edu	37	19	12902787	12902787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	12902787	T	C	12902787	3	2	39	1	0	0	0	0	1	0	0	0	7977	1522	53	3	204	3	JUNB	19	12902787	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	5190448	12902787	46226196	121	2474											
ZNF681	148213	hgsc.bcm.edu	37	19	23927139	23927139	+	Missense_Mutation	SNP	T	T	G	rs76432318	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	23927139	T	G	23927139	3	3	39	1	0	0	0	0	1	0	0	0	18100	1821	63	5	728	5	ZNF681	19	23927139	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	11024352	23927139	35201844	122	2475											
LSM14A	26065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34712486	34712486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	34712486	G	T	34712486	3	4	39	1	0	0	0	0	1	0	0	0	9061	1145	40	4	1245	4	LSM14A	19	34712486	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	10785347	34712486	24416497	123	2476											
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38572702	38572702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	38572702	T	C	38572702	3	2	39	1	0	0	0	0	1	0	0	0	14344	1609	56	3	499	3	SIPA1L3	19	38572702	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	3860216	38572702	20556281	124	2477											
SPTBN4	57731	hgsc.bcm.edu	37	19	41018832	41018832	+	Silent	SNP	A	A	G	rs814533		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	41018832	A	G	41018832	2	3	39	1	0	0	0	0	0	0	0	1	15133	291	11	3		3	SPTBN4	19	41018832	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	2446130	41018832	18110151	125	2478											
FKRP	79147	hgsc.bcm.edu	37	19	47259238	47259238	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	47259238	G	A	47259238	2	1	39	1	0	0	0	0	0	0	0	1	5924	1020	36	2		2	FKRP	19	47259238	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	6240406	47259238	11869745	126	2479											
RUVBL2	10856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49510337	49510337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	49510337	T	C	49510337	3	2	39	1	0	0	0	0	1	0	0	0	13766	1551	54	3	346	3	RUVBL2	19	49510337	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	2251099	49510337	9618646	127	2480											
SYT3	84258	hgsc.bcm.edu	37	19	51133415	51133415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	51133415	G	A	51133415	3	1	39	1	0	0	0	0	1	0	0	0	15487	1203	42	2	1108	2	SYT3	19	51133415	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	1623078	51133415	7995568	128	2481											
ADRA1D	146	hgsc.bcm.edu	37	20	4229281	4229281	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	4229281	A	G	4229281	2	3	39	1	0	0	0	0	0	0	0	1	336	349	13	3		3	ADRA1D	20	4229281	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08		4229281	58796239	129	2482											
MYL9	10398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35177592	35177592	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	35177592	C	T	35177592	2	4	39	1	0	0	0	0	0	0	0	1	10061	564	20	2		2	MYL9	20	35177592	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	30948311	35177592	27847928	130	2483											
TGIF2	60436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	35219568	35219569	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	35219569	-	A	35219568	7	5	39	1	0	1	1	0	0	0	0	0	15838	1175	41	0	454	0	TGIF2	20	35219568	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	41976	35219568	27805952	131	2484											
RRP1	8568	hgsc.bcm.edu	37	21	45209575	45209575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	45209575	A	G	45209575	3	3	39	1	0	0	0	0	1	0	0	0	13698	188	7	3	67	3	RRP1	21	45209575	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08		45209575	2920320	132	2485											
TPST2	8459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26937461	26937461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	A	26937461	G	A	26937461	3	1	39	1	0	0	0	0	1	0	0	0	16440	1086	38	1	1013	1	TPST2	22	26937461	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08		26937461	24367105	133	2486											
NF2	4771	broad.mit.edu	37	22	30069467	30069470	+	Frame_Shift_Del	DEL	AGAG	AGAG	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	AGAG	AGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	-	30069470	AGAG	-	30069467	7	5	39	1	0	1	0	1	0	0	0	0	10364	175	7	0	1378	0	NF2	22	30069467	Frame_Shift_Del	DEL	AGAG	TCGA-A4-8098-01A-11D-2396-08	3132006	30069467	21235099	134	2487											
RFPL2	10739	hgsc.bcm.edu	37	22	32598365	32598365	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	32598365	C	G	32598365	3	3	39	1	0	0	0	0	1	0	0	0	13267	478	17	4	1160	4	RFPL2	22	32598365	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	2528898	32598365	18706201	135	2488											
UBA1	7317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47069022	47069022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	47069022	T	G	47069022	3	3	39	1	0	0	0	0	1	0	0	0	16839	1710	59	5	2001	5	UBA1	23	47069022	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08		47069022	108201538	136	2489											
FAAH2	158584	hgsc.bcm.edu	37	X	57313330	57313330	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	G	57313330	A	G	57313330	2	3	39	1	0	0	0	0	0	0	0	1	5358	407	15	3		3	FAAH2	23	57313330	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10244308	57313330	97957230	137	2490											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	123211859	123211862	+	Frame_Shift_Del	DEL	AGAT	AGAT	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	AGAT	AGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	-	123211862	AGAT	-	123211859	7	5	39	1	0	1	0	1	0	0	0	0	15255	188	7	0	2824	0	STAG2	23	123211859	Frame_Shift_Del	DEL	AGAT	TCGA-A4-8098-01A-11D-2396-08	65898529	123211859	32058701	138	2491											
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153037078	153037078	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	C	153037078	G	C	153037078	3	2	39	1	0	0	0	0	1	0	0	0	12132	1175	41	4	2653	4	PLXNB3	23	153037078	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	29825219	153037078	2233482	139	2492											
PLXNB3	5365	hgsc.bcm.edu	37	X	153037467	153037467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	T	153037467	C	T	153037467	3	4	39	1	0	0	0	0	1	0	0	0	12132	739	26	2	2838	2	PLXNB3	23	153037467	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	389	153037467	2233093	140	2493											
ARHGEF10L	55160	bcgsc.ca	37	1	17939552	17939552	+	Splice_Site	SNP	G	G	T	rs76330277	alternate_allele	TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	17939552	G	T	17939552	5	4	40	1	0	0	0	0	0	0	1	0	895	985	34	4	635	4	ARHGEF10L	1	17939552	Splice_Site	SNP	G	TCGA-A4-8310-01A-11D-2396-08		17939552	231311069	1	2494											
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	23779230	23779231	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	GG	23779231	-	GG	23779230	7	5	40	1	0	1	1	0	0	0	0	0	1012	188	7	0	2439	0	ASAP3	1	23779230	Frame_Shift_Ins	INS	-	TCGA-A4-8310-01A-11D-2396-08	5839678	23779230	225471391	2	2495											
LDLRAP1	26119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	25889193	25889193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	25889193	A	G	25889193	3	3	40	1	0	0	0	0	1	0	0	0	8715	188	7	3	536	3	LDLRAP1	1	25889193	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	2109963	25889193	223361428	3	2496											
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	89325567	89325567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	89325567	T	C	89325567	3	2	40	1	0	0	0	0	1	0	0	0	6862	1841	64	3	429	3	GTF2B	1	89325567	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	63436374	89325567	159925054	4	2497											
CCDC18	343099	hgsc.bcm.edu;broad.mit.edu	37	1	93680444	93680444	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	-	93680444	C	-	93680444	7	5	40	1	0	1	0	1	0	0	0	0	2796	797	28	0	2040	0	CCDC18	1	93680444	Frame_Shift_Del	DEL	C	TCGA-A4-8310-01A-11D-2396-08	4354877	93680444	155570177	5	2498											
TARS2	80222	hgsc.bcm.edu	37	1	150469382	150469382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	150469382	A	T	150469382	3	4	40	1	0	0	0	0	1	0	0	0	15572	179	7	5	1052	5	TARS2	1	150469382	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	56788938	150469382	98781239	6	2499											
GOLPH3L	55204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150634375	150634375	+	Silent	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	150634375	A	T	150634375	2	4	40	1	0	0	0	0	0	0	0	1	6576	146	6	5		5	GOLPH3L	1	150634375	Silent	SNP	A	TCGA-A4-8310-01A-11D-2396-08	164993	150634375	98616246	7	2500											
RPTN	126638	broad.mit.edu	37	1	152127881	152127884	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	TGTC	TGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	-	152127884	TGTC	-	152127881	7	5	40	1	0	1	0	1	0	0	0	0	13677	1812	63	0	664	0	RPTN	1	152127881	Frame_Shift_Del	DEL	TGTC	TCGA-A4-8310-01A-11D-2396-08	1493506	152127881	97122740	8	2501											
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153915526	153915526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	153915526	A	T	153915526	3	4	40	1	0	0	0	0	1	0	0	0	4436	188	7	5	4196	5	DENND4B	1	153915526	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	1787645	153915526	95335095	9	2502											
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	190068039	190068039	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	190068039	G	C	190068039	3	2	40	1	0	0	0	0	1	0	0	0	5601	1194	42	4	894	4	FAM5C	1	190068039	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	36152513	190068039	59182582	10	2503											
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233190130	233190130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	233190130	T	C	233190130	3	2	40	1	0	0	0	0	1	0	0	0	11599	1725	60	3	2218	3	PCNXL2	1	233190130	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	43122091	233190130	16060491	11	2504											
TEKT4	150483	ucsc.edu;bcgsc.ca	37	2	95540716	95540716	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	95540716	G	A	95540716	2	1	40	1	0	0	0	0	0	0	0	1	15767	1248	44	2		2	TEKT4	2	95540716	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08		95540716	147658657	12	2505											
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133721438	133721438	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	133721438	T	G	133721438	3	3	40	1	0	0	0	0	1	0	0	0	10230	1609	56	5	5347	5	NCKAP5	2	133721438	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	38180722	133721438	109477935	13	2506											
ACMSD	130013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	135659397	135659398	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	135659398	-	T	135659397	7	5	40	1	0	1	1	0	0	0	0	0	144	204	8	0	1016	0	ACMSD	2	135659397	Frame_Shift_Ins	INS	-	TCGA-A4-8310-01A-11D-2396-08	1937959	135659397	107539976	14	2507											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	148677893	148677893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	148677893	G	A	148677893	3	1	40	1	0	0	0	0	1	0	0	0	223	1319	46	2	1087	2	ACVR2A	2	148677893	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	13018496	148677893	94521480	15	2508											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	152482148	152482148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	152482148	A	G	152482148	3	3	40	1	0	0	0	0	1	0	0	0	10309	372	13	3	15782	3	NEB	2	152482148	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	3804255	152482148	90717225	16	2509											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	182778659	182778659	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	182778659	A	T	182778659	3	4	40	1	0	0	0	0	1	0	0	0	15195	202	7	5	1612	5	SSFA2	2	182778659	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	30296511	182778659	60420714	17	2510											
ICOS	29851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204822592	204822592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	204822592	A	C	204822592	3	2	40	1	0	0	0	0	1	0	0	0	7493	14	1	5	586	5	ICOS	2	204822592	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	22043933	204822592	38376781	18	2511											
ACADL	33	hgsc.bcm.edu	37	2	211068079	211068079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	211068079	A	C	211068079	3	2	40	1	0	0	0	0	1	0	0	0	112	127	5	5	348	5	ACADL	2	211068079	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	6245487	211068079	32131294	19	2512											
DNPEP	23549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220239739	220239739	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	220239739	G	A	220239739	2	1	40	1	0	0	0	0	0	0	0	1	4681	1277	45	2		2	DNPEP	2	220239739	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	9171660	220239739	22959634	20	2513											
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121433805	121433805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	121433805	G	A	121433805	3	1	40	1	0	0	0	0	1	0	0	0	6572	1174	41	2	8539	2	GOLGB1	3	121433805	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08		121433805	76588625	21	2514											
ZIC1	7545	hgsc.bcm.edu	37	3	147128606	147128606	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	147128606	C	G	147128606	3	3	40	1	0	0	0	0	1	0	0	0	17690	739	26	4	709	4	ZIC1	3	147128606	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	25694801	147128606	50893824	22	2515											
TNIP2	79155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2746482	2746482	+	Missense_Mutation	SNP	G	G	A	rs150823075		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	2746482	G	A	2746482	3	1	40	1	0	0	0	0	1	0	0	0	16327	1087	38	1	453	1	TNIP2	4	2746482	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08		2746482	188407794	23	2516											
DCUN1D4	23142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	52765463	52765463	+	Silent	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	52765463	T	C	52765463	2	2	40	1	0	0	0	0	0	0	0	1	4318	1403	49	3		3	DCUN1D4	4	52765463	Silent	SNP	T	TCGA-A4-8310-01A-11D-2396-08	50018981	52765463	138388813	24	2517											
PDE5A	8654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	120446828	120446828	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	120446828	T	A	120446828	3	1	40	1	0	0	0	0	1	0	0	0	11651	1580	55	5	1012	5	PDE5A	4	120446828	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	67681365	120446828	70707448	25	2518											
TBC1D9	23158	hgsc.bcm.edu	37	4	141590820	141590820	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	141590820	G	T	141590820	2	4	40	1	0	0	0	0	0	0	0	1	15639	1086	38	4		4	TBC1D9	4	141590820	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	21143992	141590820	49563456	26	2519											
HMGB2	3148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	174254247	174254247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	174254247	T	C	174254247	3	2	40	1	0	0	0	0	1	0	0	0	7233	1609	56	3	372	3	HMGB2	4	174254247	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	32663427	174254247	16900029	27	2520											
SNX25	83891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186188140	186188140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	186188140	G	A	186188140	3	1	40	1	0	0	0	0	1	0	0	0	14909	1175	41	2	444	2	SNX25	4	186188140	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	11933893	186188140	4966136	28	2521											
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1323010	1323010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	1323010	T	C	1323010	3	2	40	1	0	0	0	0	1	0	0	0	3557	1493	52	3	339	3	CLPTM1L	5	1323010	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		1323010	179592250	29	2522											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5240027	5240027	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	5240027	C	G	5240027	3	3	40	1	0	0	0	0	1	0	0	0	261	564	20	4	2574	4	ADAMTS16	5	5240027	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	3917017	5240027	175675233	30	2523											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32059458	32059458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	32059458	C	A	32059458	3	1	40	1	0	0	0	0	1	0	0	0	11708	680	24	4	2360	4	PDZD2	5	32059458	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	26819431	32059458	148855802	31	2524											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37181023	37181023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	37181023	C	T	37181023	3	4	40	1	0	0	0	0	1	0	0	0	2303	565	20	2	4191	2	C5orf42	5	37181023	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	5121565	37181023	143734237	32	2525											
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	39390645	39390645	+	Silent	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	39390645	A	G	39390645	2	3	40	1	0	0	0	0	0	0	0	1	4220	10	1	3		3	DAB2	5	39390645	Silent	SNP	A	TCGA-A4-8310-01A-11D-2396-08	2209622	39390645	141524615	33	2526											
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	39394411	39394411	+	Silent	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	39394411	T	C	39394411	2	2	40	1	0	0	0	0	0	0	0	1	4220	1606	56	3		3	DAB2	5	39394411	Silent	SNP	T	TCGA-A4-8310-01A-11D-2396-08	3766	39394411	141520849	34	2527											
PLK2	10769	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	57753133	57753133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	57753133	C	T	57753133	3	4	40	1	0	0	0	0	1	0	0	0	12103	797	28	2	1206	2	PLK2	5	57753133	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	18358722	57753133	123162127	35	2528											
GPR98	84059	hgsc.bcm.edu	37	5	89949707	89949707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	89949707	A	G	89949707	3	3	40	1	0	0	0	0	1	0	0	0	6728	391	14	3	4394	3	GPR98	5	89949707	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	32196574	89949707	90965553	36	2529											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	127641530	127641530	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	127641530	G	C	127641530	3	2	40	1	0	0	0	0	1	0	0	0	5710	962	34	4	3297	4	FBN2	5	127641530	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	37691823	127641530	53273730	37	2530											
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178987050	178987050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	178987050	A	G	178987050	3	3	40	1	0	0	0	0	1	0	0	0	13751	304	11	3	341	3	RUFY1	5	178987050	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	51345520	178987050	1928210	38	2531											
KIF13A	63971	hgsc.bcm.edu	37	6	17771374	17771374	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	17771374	C	G	17771374	3	3	40	1	0	0	0	0	1	0	0	0	8281	922	32	4	898	4	KIF13A	6	17771374	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08		17771374	153343693	39	2532											
DDAH2	23564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31696435	31696435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	31696435	C	T	31696435	3	4	40	1	0	0	0	0	1	0	0	0	4324	536	19	1	492	1	DDAH2	6	31696435	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	13925061	31696435	139418632	40	2533											
GSTA1	2938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52658943	52658943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	52658943	A	G	52658943	3	3	40	1	0	0	0	0	1	0	0	0	6837	420	15	3	286	3	GSTA1	6	52658943	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	20962508	52658943	118456124	41	2534											
KCNQ5	56479	hgsc.bcm.edu	37	6	73332281	73332281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	73332281	C	G	73332281	3	3	40	1	0	0	0	0	1	0	0	0	8093	507	18	4	366	4	KCNQ5	6	73332281	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	20673338	73332281	97782786	42	2535											
IBTK	25998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	82904254	82904254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	82904254	T	G	82904254	3	3	40	1	0	0	0	0	1	0	0	0	7483	1406	49	5	809	5	IBTK	6	82904254	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	9571973	82904254	88210813	43	2536											
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	97562031	97562031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	97562031	G	T	97562031	3	4	40	1	0	0	0	0	1	0	0	0	8393	1377	48	4	1022	4	KLHL32	6	97562031	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	14657777	97562031	73553036	44	2537											
USP45	85015	hgsc.bcm.edu	37	6	99956502	99956502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	99956502	A	G	99956502	3	3	40	1	0	0	0	0	1	0	0	0	17088	304	11	3	2251	3	USP45	6	99956502	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	2394471	99956502	71158565	45	2538											
RGS17	26575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153332802	153332802	+	Silent	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	153332802	A	T	153332802	2	4	40	1	0	0	0	0	0	0	0	1	13312	59	3	5		5	RGS17	6	153332802	Silent	SNP	A	TCGA-A4-8310-01A-11D-2396-08	53376300	153332802	17782265	46	2539											
PPIA	5478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44839397	44839397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	44839397	G	T	44839397	3	4	40	1	0	0	0	0	1	0	0	0	12323	1348	47	4	300	4	PPIA	7	44839397	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08		44839397	114299266	47	2540											
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	148495672	148495672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	148495672	T	C	148495672	3	2	40	1	0	0	0	0	1	0	0	0	4056	1764	61	3	2113	3	CUL1	7	148495672	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	103656275	148495672	10642991	48	2541											
MLL3	58508	hgsc.bcm.edu	37	7	151945349	151945349	+	Nonsense_Mutation	SNP	T	T	A	rs201039690		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	151945349	T	A	151945349	4	1	40	1	0	0	0	0	0	1	0	0	9629	1850	64	5	12749	5	MLL3	7	151945349	Nonsense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	3449677	151945349	7193314	49	2542											
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu	37	8	8654999	8654999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	8654999	C	G	8654999	3	3	40	1	0	0	0	0	1	0	0	0	9528	864	30	4	165	4	MFHAS1	8	8654999	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08		8654999	137709023	50	2543											
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17419589	17419589	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	17419589	G	A	17419589	2	1	40	1	0	0	0	0	0	0	0	1	14710	962	34	2		2	SLC7A2	8	17419589	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	8764590	17419589	128944433	51	2544											
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	126085409	126085409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	126085409	T	G	126085409	3	3	40	1	0	0	0	0	1	0	0	0	8168	1464	51	5	2427	5	KIAA0196	8	126085409	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	108665820	126085409	20278613	52	2545											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu	37	8	132052526	132052526	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	132052526	G	A	132052526	2	1	40	1	0	0	0	0	0	0	0	1	300	1164	41	2		2	ADCY8	8	132052526	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	5967117	132052526	14311496	53	2546											
BAI1	575	hgsc.bcm.edu;broad.mit.edu	37	8	143623373	143623373	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	143623373	G	C	143623373	3	2	40	1	0	0	0	0	1	0	0	0	1298	1059	37	4	3884	4	BAI1	8	143623373	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	11570847	143623373	2740649	54	2547											
CYP11B1	1584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143957217	143957217	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	143957217	G	A	143957217	2	1	40	1	0	0	0	0	0	0	0	1	4147	1194	42	2		2	CYP11B1	8	143957217	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	333844	143957217	2406805	55	2548											
NFX1	4799	bcgsc.ca	37	9	33307212	33307212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	33307212	T	C	33307212	3	2	40	1	0	0	0	0	1	0	0	0	10394	1696	59	3	1309	3	NFX1	9	33307212	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		33307212	107906219	56	2549											
TRPM3	80036	hgsc.bcm.edu	37	9	73255487	73255487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	73255487	G	C	73255487	3	2	40	1	0	0	0	0	1	0	0	0	16599	1328	46	4	3792	4	TRPM3	9	73255487	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	39948275	73255487	67957944	57	2550											
PCSK5	5125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	78953204	78953204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	78953204	T	C	78953204	3	2	40	1	0	0	0	0	1	0	0	0	11610	1711	59	3		3	PCSK5	9	78953204	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	5697717	78953204	62260227	58	2551											
HNRNPK	3190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86587099	86587099	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	86587099	G	T	86587099	2	4	40	1	0	0	0	0	0	0	0	1	7276	1335	47	4		4	HNRNPK	9	86587099	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	7633895	86587099	54626332	59	2552											
FNBP1	23048	hgsc.bcm.edu	37	9	132719674	132719674	+	Missense_Mutation	SNP	C	C	G	rs200418146	alternate_allele	TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	132719674	C	G	132719674	3	3	40	1	0	0	0	0	1	0	0	0	5972	768	27	4	1423	4	FNBP1	9	132719674	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	46132575	132719674	8493757	60	2553											
SNAPC4	6621	hgsc.bcm.edu;broad.mit.edu	37	9	139272475	139272475	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	139272475	G	T	139272475	2	4	40	1	0	0	0	0	0	0	0	1	14850	1219	43	4		4	SNAPC4	9	139272475	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	6552801	139272475	1940956	61	2554											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17157562	17157562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	17157562	A	G	17157562	3	3	40	1	0	0	0	0	1	0	0	0	4053	159	6	3	10487	3	CUBN	10	17157562	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08		17157562	118377185	62	2555											
MYO3A	53904	hgsc.bcm.edu	37	10	26459400	26459400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	26459400	C	A	26459400	3	1	40	1	0	0	0	0	1	0	0	0	10083	477	17	4	3436	4	MYO3A	10	26459400	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	9301838	26459400	109075347	63	2556											
HECTD2	143279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	93252242	93252243	+	Splice_Site	INS	-	-	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	93252243	-	T	93252242	8	5	40	1	0	1	1	0	0	0	1	0	7047	1275	44	0	1507	0	HECTD2	10	93252242	Splice_Site	INS	-	TCGA-A4-8310-01A-11D-2396-08	66792842	93252242	42282505	64	2557											
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	94239044	94239044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	94239044	T	C	94239044	3	2	40	1	0	0	0	0	1	0	0	0	7500	1406	49	3	1229	3	IDE	10	94239044	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	986802	94239044	41295703	65	2558											
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62782340	62782340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	62782340	T	C	62782340	3	2	40	1	0	0	0	0	1	0	0	0	14473	1464	51	3	1577	3	SLC22A8	11	62782340	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		62782340	72224176	66	2559											
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67263727	67263727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	67263727	T	C	67263727	3	2	40	1	0	0	0	0	1	0	0	0	11957	1792	62	3	1535	3	PITPNM1	11	67263727	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	4481387	67263727	67742789	67	2560											
PCF11	51585	hgsc.bcm.edu	37	11	82877237	82877237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	82877237	A	G	82877237	3	3	40	1	0	0	0	0	1	0	0	0	11580	304	11	3	1316	3	PCF11	11	82877237	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	15613510	82877237	52129279	68	2561											
ALG9	79796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111715419	111715419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	111715419	A	G	111715419	3	3	40	1	0	0	0	0	1	0	0	0	524	101	4	3	961	3	ALG9	11	111715419	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	28838182	111715419	23291097	69	2562											
CACNA1C	775	hgsc.bcm.edu	37	12	2795428	2795428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	2795428	A	G	2795428	3	3	40	1	0	0	0	0	1	0	0	0	2542	217	8	3	6664	3	CACNA1C	12	2795428	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08		2795428	131056467	70	2563											
NCAPD2	9918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6638743	6638743	+	Silent	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	6638743	C	A	6638743	2	1	40	1	0	0	0	0	0	0	0	1	10212	759	27	4		4	NCAPD2	12	6638743	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	3843315	6638743	127213152	71	2564											
OS9	10956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	58087952	58087952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	58087952	C	T	58087952	3	4	40	1	0	0	0	0	1	0	0	0	11279	768	27	1	10	1	OS9	12	58087952	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	51449209	58087952	75763943	72	2565											
ESD	2098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	47345616	47345616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	47345616	A	G	47345616	3	3	40	1	0	0	0	0	1	0	0	0	5252	420	15	3	68	3	ESD	13	47345616	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08		47345616	67824262	73	2566											
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52511445	52511445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	52511445	T	G	52511445	3	3	40	1	0	0	0	0	1	0	0	0	1191	1435	50	5	421	5	ATP7B	13	52511445	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	5165829	52511445	62658433	74	2567											
STK24	8428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	99114124	99114125	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	99114125	-	C	99114124	7	5	40	1	0	1	1	0	0	0	0	0	15305	1306	46	0	354	0	STK24	13	99114124	Frame_Shift_Ins	INS	-	TCGA-A4-8310-01A-11D-2396-08	46602679	99114124	16055754	75	2568											
BAZ1A	11177	hgsc.bcm.edu	37	14	35270380	35270380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	35270380	T	G	35270380	3	3	40	1	0	0	0	0	1	0	0	0	1329	1841	64	5	3869	5	BAZ1A	14	35270380	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		35270380	72079160	76	2569											
SERPINA10	51156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94756790	94756790	+	Silent	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	94756790	C	T	94756790	2	4	40	1	0	0	0	0	0	0	0	1	14100	680	24	2		2	SERPINA10	14	94756790	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	59486410	94756790	12592750	77	2570											
MYO1E	4643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	59515313	59515313	+	Silent	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	59515313	C	G	59515313	2	3	40	1	0	0	0	0	0	0	0	1	10079	581	21	4		4	MYO1E	15	59515313	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08		59515313	43016079	78	2571											
RORA	6095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	60849084	60849084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	60849084	T	C	60849084	3	2	40	1	0	0	0	0	1	0	0	0	13541	1783	62	3	1447	3	RORA	15	60849084	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	1333771	60849084	41682308	79	2572											
DENND4A	10260	hgsc.bcm.edu	37	15	66010115	66010115	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	66010115	C	G	66010115	5	3	40	1	0	0	0	0	0	0	1	0	4435	521	18	4	3996	4	DENND4A	15	66010115	Splice_Site	SNP	C	TCGA-A4-8310-01A-11D-2396-08	5161031	66010115	36521277	80	2573											
C15orf39	56905	bcgsc.ca	37	15	75499127	75499127	+	Silent	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	75499127	C	A	75499127	2	1	40	1	0	0	0	0	0	0	0	1	1795	668	24	4		4	C15orf39	15	75499127	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	9489012	75499127	27032265	81	2574											
GFER	2671	hgsc.bcm.edu	37	16	2034408	2034408	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	2034408	G	C	2034408	3	2	40	1	0	0	0	0	1	0	0	0	6345	991	35	4	191	4	GFER	16	2034408	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08		2034408	88320345	82	2575			1	7		3	3	1560	N	T_G_A	1.418864e-05
GFER	2671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2035934	2035934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	2035934	A	C	2035934	3	2	40	1	0	0	0	0	1	0	0	0	6345	130	5	5	533	5	GFER	16	2035934	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	1526	2035934	88318819	83	2576			1	7		3	3	1560	N	T_G_A	1.418864e-05
GFER	2671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2035967	2035967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	2035967	T	A	2035967	3	1	40	1	0	0	0	0	1	0	0	0	6345	1609	56	5	566	5	GFER	16	2035967	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	33	2035967	88318786	84	2577			1	7		3	3	1560	N	T_G_A	1.418864e-05
BFAR	51283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14755823	14755823	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	14755823	G	T	14755823	2	4	40	1	0	0	0	0	0	0	0	1	1414	1364	48	4		4	BFAR	16	14755823	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	12719856	14755823	75598930	85	2578											
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	17202725	17202725	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	17202725	C	A	17202725	4	1	40	1	0	0	0	0	0	1	0	0	17475	864	30	4	176	4	XYLT1	16	17202725	Nonsense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	2446902	17202725	73152028	86	2579											
SLC12A4	6560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67982000	67982000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	67982000	G	A	67982000	3	1	40	1	0	0	0	0	1	0	0	0	14398	1261	44	2	1490	2	SLC12A4	16	67982000	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	50779275	67982000	22372753	87	2580											
CNTNAP4	85445	bcgsc.ca	37	16	76389341	76389341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	76389341	G	C	76389341	3	2	40	1	0	0	0	0	1	0	0	0	3651	971	34	4	346	4	CNTNAP4	16	76389341	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	8407341	76389341	13965412	88	2581											
NDEL1	81565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8350137	8350137	+	Silent	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	8350137	T	C	8350137	2	2	40	1	0	0	0	0	0	0	0	1	10251	1664	58	3		3	NDEL1	17	8350137	Silent	SNP	T	TCGA-A4-8310-01A-11D-2396-08		8350137	72845073	89	2582											
SLFN12	55106	bcgsc.ca	37	17	33749975	33749975	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	33749975	C	A	33749975	4	1	40	1	0	0	0	0	0	1	0	0	14747	922	32	4	1675	4	SLFN12	17	33749975	Nonsense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	25399838	33749975	47445235	90	2583											
IGFBP4	3487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38612795	38612795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	38612795	A	G	38612795	3	3	40	1	0	0	0	0	1	0	0	0	7588	304	11	3	751	3	IGFBP4	17	38612795	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	4862820	38612795	42582415	91	2584											
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40025023	40025023	+	Silent	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	40025023	T	C	40025023	2	2	40	1	0	0	0	0	0	0	0	1	143	1490	52	3		3	ACLY	17	40025023	Silent	SNP	T	TCGA-A4-8310-01A-11D-2396-08	1412228	40025023	41170187	92	2585											
NACA2	342538	ucsc.edu	37	17	59668191	59668191	+	Silent	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	59668191	C	T	59668191	2	4	40	1	0	0	0	0	0	0	0	1	10141	639	23	1		1	NACA2	17	59668191	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	19643168	59668191	21527019	93	2586											
CSNK1D	1453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80202675	80202675	+	Silent	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	80202675	C	T	80202675	2	4	40	1	0	0	0	0	0	0	0	1	3954	564	20	2		2	CSNK1D	17	80202675	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	20534484	80202675	992535	94	2587											
DSG3	1830	hgsc.bcm.edu	37	18	29054160	29054160	+	Silent	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	29054160	A	G	29054160	2	3	40	1	0	0	0	0	0	0	0	1	4780	291	11	3		3	DSG3	18	29054160	Silent	SNP	A	TCGA-A4-8310-01A-11D-2396-08		29054160	49023088	95	2588											
SETBP1	26040	hgsc.bcm.edu	37	18	42532691	42532691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	42532691	A	G	42532691	3	3	40	1	0	0	0	0	1	0	0	0	14142	188	7	3	3589	3	SETBP1	18	42532691	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	13478531	42532691	35544557	96	2589											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11132430	11132430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	11132430	A	T	11132430	3	4	40	1	0	0	0	0	1	0	0	0	14783	69	3	5	2716	5	SMARCA4	19	11132430	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08		11132430	47996553	97	2590											
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31375212	31375212	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	31375212	G	A	31375212	2	1	40	1	0	0	0	0	0	0	0	1	4679	1074	38	1		1	DNMT3B	20	31375212	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08		31375212	31650308	98	2591											
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33330861	33330861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	C	33330861	T	C	33330861	3	2	40	1	0	0	0	0	1	0	0	0	10240	1559	54	3	3012	3	NCOA6	20	33330861	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	1955649	33330861	29694659	99	2592											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47628617	47628617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	47628617	C	A	47628617	3	1	40	1	0	0	0	0	1	0	0	0	853	681	24	4	4024	4	ARFGEF2	20	47628617	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	14297756	47628617	15396903	100	2593											
MYO18B	84700	hgsc.bcm.edu	37	22	26166902	26166902	+	Missense_Mutation	SNP	T	T	A	rs201482451		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	A	26166902	T	A	26166902	3	1	40	1	0	0	0	0	1	0	0	0	10073	1493	52	5	1661	5	MYO18B	22	26166902	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		26166902	25137664	101	2594											
APOL6	80830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36055131	36055131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	36055131	C	G	36055131	3	3	40	1	0	0	0	0	1	0	0	0	810	913	32	4	526	4	APOL6	22	36055131	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	9888229	36055131	15249435	102	2595											
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	39932880	39932880	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	39932880	G	T	39932880	2	4	40	1	0	0	0	0	0	0	0	1	1386	1219	43	4		4	BCOR	23	39932880	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08		39932880	115337680	103	2596											
CXorf38	159013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	40506303	40506303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	G	40506303	A	G	40506303	3	3	40	1	0	0	0	0	1	0	0	0	4109	188	7	3	672	3	CXorf38	23	40506303	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	573423	40506303	114764257	104	2597											
GJB1	2705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70444364	70444364	+	Silent	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	70444364	C	T	70444364	2	4	40	1	0	0	0	0	0	0	0	1	6414	639	23	1		1	GJB1	23	70444364	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	29938061	70444364	84826196	105	2598											
PASD1	139135	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	150828200	150828200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	T	150828200	G	T	150828200	3	4	40	1	0	0	0	0	1	0	0	0	11478	1319	46	4	767	4	PASD1	23	150828200	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	80383836	150828200	4442360	106	2599											
HES4	57801	hgsc.bcm.edu	37	1	934488	934488	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	934488	C	G	934488	3	3	41	1	0	0	0	0	1	0	0	0	7075	681	24	4	52	4	HES4	1	934488	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08		934488	248316133	1	2600											
PEX14	5195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10678475	10678475	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	10678475	G	A	10678475	5	1	41	1	0	0	0	0	0	0	1	0	11749	1275	44	2	403	2	PEX14	1	10678475	Splice_Site	SNP	G	TCGA-A4-8311-01A-11D-2396-08	9743987	10678475	238572146	2	2601											
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52961169	52961169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	52961169	T	C	52961169	3	2	41	1	0	0	0	0	1	0	0	0	17592	1406	49	3	3841	3	ZCCHC11	1	52961169	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	42282694	52961169	196289452	3	2602											
LEPR	3953	hgsc.bcm.edu	37	1	66087101	66087101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	66087101	T	C	66087101	3	2	41	1	0	0	0	0	1	0	0	0	8735	1783	62	3	2619	3	LEPR	1	66087101	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	13125932	66087101	183163520	4	2603											
ABCA4	24	hgsc.bcm.edu	37	1	94485270	94485270	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	94485270	G	C	94485270	3	2	41	1	0	0	0	0	1	0	0	0	34	933	33	4	1817	4	ABCA4	1	94485270	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	28398169	94485270	154765351	5	2604											
GPR161	23432	hgsc.bcm.edu	37	1	168066462	168066462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	168066462	G	A	168066462	3	1	41	1	0	0	0	0	1	0	0	0	6672	971	34	2	1222	2	GPR161	1	168066462	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	73581192	168066462	81184159	6	2605											
GALNT2	2590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230372159	230372159	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	230372159	C	T	230372159	2	4	41	1	0	0	0	0	0	0	0	1	6220	709	25	2		2	GALNT2	1	230372159	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	62305697	230372159	18878462	7	2606											
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	8872073	8872073	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	-	8872073	A	-	8872073	7	5	41	1	0	1	0	1	0	0	0	0	8278	246	9	0	1226	0	KIDINS220	2	8872073	Frame_Shift_Del	DEL	A	TCGA-A4-8311-01A-11D-2396-08		8872073	234327300	8	2607											
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	45616665	45616665	+	Silent	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	45616665	G	C	45616665	2	2	41	1	0	0	0	0	0	0	0	1	15145	1306	46	4		4	SRBD1	2	45616665	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	36744592	45616665	197582708	9	2608											
ZNF514	84874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95815137	95815137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	95815137	A	C	95815137	3	2	41	1	0	0	0	0	1	0	0	0	17971	101	4	5	113	5	ZNF514	2	95815137	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	50198472	95815137	147384236	10	2609											
SF3B1	23451	hgsc.bcm.edu	37	2	198266726	198266726	+	Missense_Mutation	SNP	G	G	T	rs78164940		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	198266726	G	T	198266726	3	4	41	1	0	0	0	0	1	0	0	0	14162	1116	39	4	1752	4	SF3B1	2	198266726	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	102451589	198266726	44932647	11	2610											
UGT1A3	54659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	234638329	234638329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	234638329	A	G	234638329	3	3	41	1	0	0	0	0	1	0	0	0	16958	188	7	3	559	3	UGT1A3	2	234638329	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	36371603	234638329	8561044	12	2611											
SCLY	51540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	238990470	238990470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	238990470	T	C	238990470	3	2	41	1	0	0	0	0	1	0	0	0	13920	1493	52	3	623	3	SCLY	2	238990470	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	4352141	238990470	4208903	13	2612											
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	15751227	15751227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	15751227	T	C	15751227	3	2	41	1	0	0	0	0	1	0	0	0	656	1841	64	3	1961	3	ANKRD28	3	15751227	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08		15751227	182271203	14	2613											
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45780273	45780273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	45780273	G	A	45780273	3	1	41	1	0	0	0	0	1	0	0	0	13816	1188	41	2	1547	2	SACM1L	3	45780273	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	30029046	45780273	152242157	15	2614											
PDZRN3	23024	hgsc.bcm.edu	37	3	73673578	73673578	+	Silent	SNP	G	G	C	rs6763344		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	73673578	G	C	73673578	2	2	41	1	0	0	0	0	0	0	0	1	11716	987	35	4		4	PDZRN3	3	73673578	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	27893305	73673578	124348852	16	2615											
ACPL2	92370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	140979087	140979087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	140979087	C	A	140979087	3	1	41	1	0	0	0	0	1	0	0	0	166	680	24	4	72	4	ACPL2	3	140979087	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	67305509	140979087	57043343	17	2616											
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	437056	437056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	437056	A	G	437056	3	3	41	1	0	0	0	0	1	0	0	0	18134	40	2	3	1575	3	ZNF721	4	437056	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08		437056	190717220	18	2617											
SLC26A1	10861	hgsc.bcm.edu;broad.mit.edu	37	4	983983	983983	+	Silent	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	983983	T	C	983983	2	2	41	1	0	0	0	0	0	0	0	1	14527	1451	51	3		3	SLC26A1	4	983983	Silent	SNP	T	TCGA-A4-8311-01A-11D-2396-08	546927	983983	190170293	19	2618											
SH3BP2	6452	broad.mit.edu	37	4	2824661	2824661	+	Splice_Site	DEL	G	G	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	-	2824661	G	-	2824661	8	5	41	1	0	1	0	1	0	0	1	0	14258	1014	35	0	401	0	SH3BP2	4	2824661	Splice_Site	DEL	G	TCGA-A4-8311-01A-11D-2396-08	1840678	2824661	188329615	20	2619	31	2									
SH3BP2	6452	hgsc.bcm.edu;bcgsc.ca	37	4	2824664	2824664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	2824664	C	T	2824664	3	4	41	1	0	0	0	0	1	0	0	0	14258	739	26	2	404	2	SH3BP2	4	2824664	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	3	2824664	188329612	21	2620	31	2									
MFSD10	10227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2934166	2934166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	2934166	A	G	2934166	3	3	41	1	0	0	0	0	1	0	0	0	9535	217	8	3	794	3	MFSD10	4	2934166	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	109502	2934166	188220110	22	2621											
SEC24D	9871	bcgsc.ca	37	4	119666217	119666217	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	119666217	T	A	119666217	5	1	41	1	0	0	0	0	0	0	1	0	14010	1536	53	5	1432	5	SEC24D	4	119666217	Splice_Site	SNP	T	TCGA-A4-8311-01A-11D-2396-08	116732051	119666217	71488059	23	2622											
TKTL2	84076	hgsc.bcm.edu	37	4	164394649	164394649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	164394649	C	A	164394649	3	1	41	1	0	0	0	0	1	0	0	0	15948	710	25	4	1646	4	TKTL2	4	164394649	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	44728432	164394649	26759627	24	2623											
ZFR	51663	hgsc.bcm.edu	37	5	32407029	32407029	+	Silent	SNP	A	A	T	rs139769264		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	32407029	A	T	32407029	2	4	41	1	0	0	0	0	0	0	0	1	17671	175	7	5		5	ZFR	5	32407029	Silent	SNP	A	TCGA-A4-8311-01A-11D-2396-08		32407029	148508231	25	2624											
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	101834204	101834204	+	Silent	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	101834204	C	A	101834204	2	1	41	1	0	0	0	0	0	0	0	1	14745	697	25	4		4	SLCO6A1	5	101834204	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	69427175	101834204	79081056	26	2625											
IL9	3578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	135228124	135228124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	135228124	T	C	135228124	3	2	41	1	0	0	0	0	1	0	0	0	7714	1493	52	3	47	3	IL9	5	135228124	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	33393920	135228124	45687136	27	2626											
SLC35A4	113829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139947279	139947279	+	Silent	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	139947279	T	A	139947279	2	1	41	1	0	0	0	0	0	0	0	1	14586	1567	55	5		5	SLC35A4	5	139947279	Silent	SNP	T	TCGA-A4-8311-01A-11D-2396-08	4719155	139947279	40967981	28	2627											
TREM2	54209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41129014	41129014	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	41129014	C	T	41129014	2	4	41	1	0	0	0	0	0	0	0	1	16483	581	21	2		2	TREM2	6	41129014	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08		41129014	129986053	29	2628											
TJAP1	93643	hgsc.bcm.edu	37	6	43466779	43466779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	43466779	G	C	43466779	3	2	41	1	0	0	0	0	1	0	0	0	15940	1203	42	4	42	4	TJAP1	6	43466779	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	2337765	43466779	127648288	30	2629											
LCA5	167691	hgsc.bcm.edu	37	6	80197555	80197555	+	Silent	SNP	C	C	T	rs141642284		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	80197555	C	T	80197555	2	4	41	1	0	0	0	0	0	0	0	1	8663	796	28	2		2	LCA5	6	80197555	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	36730776	80197555	90917512	31	2630											
TMEM120A	83862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75617074	75617074	+	Missense_Mutation	SNP	C	C	T	rs201249328		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	75617074	C	T	75617074	3	4	41	1	0	0	0	0	1	0	0	0	16045	652	23	1	301	1	TMEM120A	7	75617074	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08		75617074	83521589	32	2631											
WDR91	29062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134873248	134873248	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	134873248	C	T	134873248	2	4	41	1	0	0	0	0	0	0	0	1	17350	680	24	2		2	WDR91	7	134873248	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	59256174	134873248	24265415	33	2632											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48744423	48744423	+	Silent	SNP	G	G	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	48744423	G	T	48744423	2	4	41	1	0	0	0	0	0	0	0	1	12531	1277	45	4		4	PRKDC	8	48744423	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		48744423	97619599	34	2633											
VCPIP1	80124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	67577113	67577113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	67577113	A	G	67577113	3	3	41	1	0	0	0	0	1	0	0	0	17153	72	3	3	1599	3	VCPIP1	8	67577113	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	18832690	67577113	78786909	35	2634											
TAF2	6873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	120816142	120816142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	120816142	G	A	120816142	3	1	41	1	0	0	0	0	1	0	0	0	15536	942	33	2	3151	2	TAF2	8	120816142	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	53239029	120816142	25547880	36	2635											
TNFSF15	9966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117552848	117552848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	117552848	G	A	117552848	3	1	41	1	0	0	0	0	1	0	0	0	16320	1000	35	2	119	2	TNFSF15	9	117552848	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08		117552848	23660583	37	2636											
TNC	3371	hgsc.bcm.edu	37	9	117853282	117853282	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	117853282	G	C	117853282	3	2	41	1	0	0	0	0	1	0	0	0	16282	1299	45	4	6697	4	TNC	9	117853282	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	300434	117853282	23360149	38	2637											
PIP5KL1	138429	hgsc.bcm.edu;broad.mit.edu	37	9	130684238	130684238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	130684238	C	T	130684238	3	4	41	1	0	0	0	0	1	0	0	0	11949	652	23	1	115	1	PIP5KL1	9	130684238	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	12830956	130684238	10529193	39	2638											
C9orf69	90120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139008421	139008421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	139008421	C	T	139008421	3	4	41	1	0	0	0	0	1	0	0	0	2494	768	27	1	11	1	C9orf69	9	139008421	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	8324183	139008421	2205010	40	2639											
TMEM72	643236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	45429133	45429133	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	45429133	G	C	45429133	3	2	41	1	0	0	0	0	1	0	0	0	16213	1212	42	4	272	4	TMEM72	10	45429133	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08		45429133	90105614	41	2640											
PDZD8	118987	hgsc.bcm.edu	37	10	119049810	119049814	+	Frame_Shift_Del	DEL	AGACG	AGACG	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	AGACG	AGACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	-	119049814	AGACG	-	119049810	7	5	41	1	0	1	0	1	0	0	0	0	11712	72	3	0	2324	0	PDZD8	10	119049810	Frame_Shift_Del	DEL	AGACG	TCGA-A4-8311-01A-11D-2396-08	73620677	119049810	16484937	42	2641											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1275533	1275533	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	1275533	G	C	1275533	3	2	41	1	0	0	0	0	1	0	0	0	9986	1348	47	4	15572	4	MUC5B	11	1275533	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08		1275533	133730983	43	2642											
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	63273900	63273900	+	Silent	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	63273900	G	C	63273900	2	2	41	1	0	0	0	0	0	0	0	1	8746	1045	37	4		4	LGALS12	11	63273900	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	61998367	63273900	71732616	44	2643											
CATSPER1	117144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65788966	65788966	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	65788966	C	T	65788966	5	4	41	1	0	0	0	0	0	0	1	0	2689	521	18	2	686	2	CATSPER1	11	65788966	Splice_Site	SNP	C	TCGA-A4-8311-01A-11D-2396-08	2515066	65788966	69217550	45	2644											
C11orf52	91894	hgsc.bcm.edu	37	11	111796415	111796415	+	Missense_Mutation	SNP	C	C	G	rs202170534		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	111796415	C	G	111796415	3	3	41	1	0	0	0	0	1	0	0	0	1649	479	17	4	119	4	C11orf52	11	111796415	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	46007449	111796415	23210101	46	2645											
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118771983	118771983	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	118771983	C	T	118771983	2	4	41	1	0	0	0	0	0	0	0	1	1382	912	32	2		2	BCL9L	11	118771983	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	6975568	118771983	16234533	47	2646											
CBL	867	bcgsc.ca	37	11	119156157	119156157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	119156157	C	T	119156157	3	4	41	1	0	0	0	0	1	0	0	0	2702	855	30	2	1864	2	CBL	11	119156157	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	384174	119156157	15850359	48	2647											
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120352127	120352127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	120352127	G	T	120352127	3	4	41	1	0	0	0	0	1	0	0	0	897	1203	42	4	4550	4	ARHGEF12	11	120352127	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	1195970	120352127	14654389	49	2648											
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50847454	50847454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	50847454	T	C	50847454	3	2	41	1	0	0	0	0	1	0	0	0	8637	1594	55	3	1050	3	LARP4	12	50847454	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08		50847454	83004441	50	2649											
GRASP	160622	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52401016	52401016	+	Silent	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	52401016	C	A	52401016	2	1	41	1	0	0	0	0	0	0	0	1	6762	871	31	4		4	GRASP	12	52401016	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	1553562	52401016	81450879	51	2650											
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	58208351	58208351	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	-	58208351	G	-	58208351	7	5	41	1	0	1	0	1	0	0	0	0	11519	1103	39	0	1673	0	PCDH17	13	58208351	Frame_Shift_Del	DEL	G	TCGA-A4-8311-01A-11D-2396-08		58208351	56961527	52	2651											
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	64914978	64914979	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	-	64914979	AA	-	64914978	7	5	41	1	0	1	0	1	0	0	0	0	9934	130	5	0	2312	0	MTHFD1	14	64914978	Frame_Shift_Del	DEL	AA	TCGA-A4-8311-01A-11D-2396-08		64914978	42434562	53	2652											
YY1	7528	bcgsc.ca	37	14	100705945	100705945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	100705945	C	T	100705945	3	4	41	1	0	0	0	0	1	0	0	0	17519	768	27	1	366	1	YY1	14	100705945	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	35790967	100705945	6643595	54	2653											
TYRO3	7301	hgsc.bcm.edu	37	15	41864763	41864763	+	Splice_Site	SNP	G	G	A	rs200965082		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	41864763	G	A	41864763	5	1	41	1	0	0	0	0	0	0	1	0	16826	1391	48	2	1934	2	TYRO3	15	41864763	Splice_Site	SNP	G	TCGA-A4-8311-01A-11D-2396-08		41864763	60666629	55	2654											
MAPK6	5597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52338881	52338881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	52338881	A	G	52338881	3	3	41	1	0	0	0	0	1	0	0	0	9288	333	12	3	226	3	MAPK6	15	52338881	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	10474118	52338881	50192511	56	2655											
SLTM	79811	hgsc.bcm.edu	37	15	59186365	59186365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	59186365	T	C	59186365	3	2	41	1	0	0	0	0	1	0	0	0	14767	1493	52	3	1743	3	SLTM	15	59186365	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	6847484	59186365	43345027	57	2656											
RAB11FIP3	9727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	568988	568988	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	568988	G	A	568988	2	1	41	1	0	0	0	0	0	0	0	1	12908	1074	38	1		1	RAB11FIP3	16	568988	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		568988	89785765	58	2657											
MRPS34	65993	hgsc.bcm.edu	37	16	1822947	1822947	+	Silent	SNP	C	C	G	rs1076695		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	1822947	C	G	1822947	2	3	41	1	0	0	0	0	0	0	0	1	9850	697	25	4		4	MRPS34	16	1822947	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	1253959	1822947	88531806	59	2658											
ZNF263	10127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3339974	3339974	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	-	3339974	T	-	3339974	7	5	41	1	0	1	0	1	0	0	0	0	17815	1522	53	0	1490	0	ZNF263	16	3339974	Frame_Shift_Del	DEL	T	TCGA-A4-8311-01A-11D-2396-08	1517027	3339974	87014779	60	2659											
PPP4C	5531	hgsc.bcm.edu	37	16	30087732	30087732	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	30087732	G	C	30087732	3	2	41	1	0	0	0	0	1	0	0	0	12412	1059	37	4	36	4	PPP4C	16	30087732	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	26747758	30087732	60267021	61	2660											
ALOX15	246	hgsc.bcm.edu	37	17	4542864	4542864	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	4542864	G	A	4542864	2	1	41	1	0	0	0	0	0	0	0	1	538	1306	46	2		2	ALOX15	17	4542864	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		4542864	76652346	62	2661											
ULK2	9706	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	19770705	19770705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	19770705	T	A	19770705	3	1	41	1	0	0	0	0	1	0	0	0	16988	1638	57	5	3192	5	ULK2	17	19770705	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	15227841	19770705	61424505	63	2662											
EVI2A	2123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29645740	29645740	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	29645740	A	T	29645740	3	4	41	1	0	0	0	0	1	0	0	0	5289	246	9	5	422	5	EVI2A	17	29645740	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	9875035	29645740	51549470	64	2663											
HNF1B	6928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36099582	36099582	+	Silent	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	36099582	T	C	36099582	2	2	41	1	0	0	0	0	0	0	0	1	7259	1722	60	3		3	HNF1B	17	36099582	Silent	SNP	T	TCGA-A4-8311-01A-11D-2396-08	6453842	36099582	45095628	65	2664											
KRT26	353288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38926071	38926071	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	38926071	C	A	38926071	4	1	41	1	0	0	0	0	0	1	0	0	8470	835	29	4	518	4	KRT26	17	38926071	Nonsense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	2826489	38926071	42269139	66	2665											
NARF	26502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80443514	80443514	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	80443514	C	T	80443514	2	4	41	1	0	0	0	0	0	0	0	1	10174	842	30	2		2	NARF	17	80443514	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	41517443	80443514	751696	67	2666											
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29788204	29788204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	29788204	A	T	29788204	3	4	41	1	0	0	0	0	1	0	0	0	9483	304	11	5	923	5	MEP1B	18	29788204	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08		29788204	48289044	68	2667											
PQLC1	80148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	77679262	77679262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	77679262	A	T	77679262	3	4	41	1	0	0	0	0	1	0	0	0	12428	188	7	5	293	5	PQLC1	18	77679262	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	47891058	77679262	397986	69	2668											
ABCA7	10347	hgsc.bcm.edu	37	19	1046944	1046944	+	Missense_Mutation	SNP	C	C	G	rs144979723	byfrequency;alternate_allele	TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	1046944	C	G	1046944	3	3	41	1	0	0	0	0	1	0	0	0	37	768	27	4	1816	4	ABCA7	19	1046944	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08		1046944	58082039	70	2669											
TMPRSS9	360200	hgsc.bcm.edu	37	19	2416797	2416797	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	2416797	G	A	2416797	2	1	41	1	0	0	0	0	0	0	0	1	16265	991	35	2		2	TMPRSS9	19	2416797	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	1369853	2416797	56712186	71	2670											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9077786	9077786	+	Silent	SNP	G	G	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	9077786	G	T	9077786	2	4	41	1	0	0	0	0	0	0	0	1	9980	1280	45	4		4	MUC16	19	9077786	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	6660989	9077786	50051197	72	2671											
ANGPTL6	83854	broad.mit.edu	37	19	10206815	10206815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	10206815	C	T	10206815	3	4	41	1	0	0	0	0	1	0	0	0	618	768	27	1	1007	1	ANGPTL6	19	10206815	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	1129029	10206815	48922168	73	2672											
MAST3	23031	hgsc.bcm.edu	37	19	18257754	18257754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	18257754	G	A	18257754	3	1	41	1	0	0	0	0	1	0	0	0	9333	1087	38	1	3237	1	MAST3	19	18257754	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	8050939	18257754	40871229	74	2673											
LMTK3	114783	hgsc.bcm.edu;broad.mit.edu	37	19	49000760	49000760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	49000760	G	A	49000760	3	1	41	1	0	0	0	0	1	0	0	0	8867	1145	40	1	836	1	LMTK3	19	49000760	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	30743006	49000760	10128223	75	2674											
LENG9	94059	hgsc.bcm.edu	37	19	54974538	54974538	+	Missense_Mutation	SNP	C	C	T	rs202206879		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	54974538	C	T	54974538	3	4	41	1	0	0	0	0	1	0	0	0	8732	652	23	1	1271	1	LENG9	19	54974538	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	5973778	54974538	4154445	76	2675											
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32026771	32026771	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	32026771	G	A	32026771	2	1	41	1	0	0	0	0	0	0	0	1	14884	1252	44	2		2	SNTA1	20	32026771	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		32026771	30998749	77	2676											
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37153507	37153507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	37153507	C	A	37153507	3	1	41	1	0	0	0	0	1	0	0	0	13028	681	24	4	1744	4	RALGAPB	20	37153507	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	5126736	37153507	25872013	78	2677											
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	46291842	46291842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	46291842	T	A	46291842	3	1	41	1	0	0	0	0	1	0	0	0	15383	1638	57	5	290	5	SULF2	20	46291842	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	9138335	46291842	16733678	79	2678											
DDX27	55661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	47835928	47835928	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	C	47835928	A	C	47835928	3	2	41	1	0	0	0	0	1	0	0	0	4356	11	1	5	38	5	DDX27	20	47835928	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	1544086	47835928	15189592	80	2679											
CRYAA	1409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44589374	44589374	+	Silent	SNP	C	C	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	44589374	C	G	44589374	2	3	41	1	0	0	0	0	0	0	0	1	3907	639	23	4		4	CRYAA	21	44589374	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08		44589374	3540521	81	2680											
DIP2A	23181	hgsc.bcm.edu	37	21	47958481	47958481	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	47958481	G	A	47958481	2	1	41	1	0	0	0	0	0	0	0	1	4529	1306	46	2		2	DIP2A	21	47958481	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	3369107	47958481	171414	82	2681											
MED15	51586	hgsc.bcm.edu	37	22	20920816	20920816	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	20920816	G	A	20920816	2	1	41	1	0	0	0	0	0	0	0	1	9440	962	34	2		2	MED15	22	20920816	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		20920816	30383750	83	2682											
UQCR10	29796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30163434	30163434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	30163434	G	A	30163434	3	1	41	1	0	0	0	0	1	0	0	0	17028	1087	38	1	49	1	UQCR10	22	30163434	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	9242618	30163434	21141132	84	2683											
SEC14L3	266629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30866522	30866522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	T	30866522	A	T	30866522	3	4	41	1	0	0	0	0	1	0	0	0	13996	214	8	5	1144	5	SEC14L3	22	30866522	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	703088	30866522	20438044	85	2684											
SUN2	25777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39138452	39138452	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	39138452	G	A	39138452	2	1	41	1	0	0	0	0	0	0	0	1	15404	933	33	2		2	SUN2	22	39138452	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	8271930	39138452	12166114	86	2685											
TMEM27	57393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	15682860	15682860	+	Silent	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	15682860	A	G	15682860	2	3	41	1	0	0	0	0	0	0	0	1	16164	214	8	3		3	TMEM27	23	15682860	Silent	SNP	A	TCGA-A4-8311-01A-11D-2396-08		15682860	139587700	87	2686											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122756985	122756985	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	A	122756985	T	A	122756985	3	1	41	1	0	0	0	0	1	0	0	0	15877	1841	64	5	1168	5	THOC2	23	122756985	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	107074125	122756985	32513575	88	2687											
FLNA	2316	hgsc.bcm.edu	37	X	153592962	153592962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	G	153592962	C	G	153592962	3	3	41	1	0	0	0	0	1	0	0	0	5940	893	31	4	6133	4	FLNA	23	153592962	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	30835977	153592962	1677598	89	2688											
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271914	45271914	+	Missense_Mutation	SNP	C	C	A	rs17886308		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	45271914	C	A	45271914	3	1	42	1	0	0	0	0	1	0	0	0	15733	884	31	4	242	4	TCTEX1D4	1	45271914	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08		45271914	203978707	1	2689											
AKR1A1	10327	hgsc.bcm.edu	37	1	46033809	46033809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	G	46033809	A	G	46033809	3	3	42	1	0	0	0	0	1	0	0	0	465	275	10	3	526	3	AKR1A1	1	46033809	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	761895	46033809	203216812	2	2690											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167097085	167097085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	167097085	A	C	167097085	3	2	42	1	0	0	0	0	1	0	0	0	4826	14	1	5	2735	5	DUSP27	1	167097085	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	121063276	167097085	82153536	3	2691											
C1orf106	55765	hgsc.bcm.edu	37	1	200860815	200860815	+	Silent	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	G	200860815	A	G	200860815	2	3	42	1	0	0	0	0	0	0	0	1	1982	301	11	3		3	C1orf106	1	200860815	Silent	SNP	A	TCGA-A4-8312-01A-11D-2396-08	33763730	200860815	48389806	4	2692											
IRF2BP2	359948	hgsc.bcm.edu	37	1	234744215	234744215	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	234744215	G	A	234744215	2	1	42	1	0	0	0	0	0	0	0	1	7837	1136	40	1		1	IRF2BP2	1	234744215	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	33883400	234744215	14506406	5	2693											
HOXD1	3231	hgsc.bcm.edu	37	2	177053728	177053728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	177053728	G	C	177053728	3	2	42	1	0	0	0	0	1	0	0	0	7325	1203	42	4	201	4	HOXD1	2	177053728	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08		177053728	66145645	6	2694											
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217279802	217279802	+	Silent	SNP	C	C	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	G	217279802	C	G	217279802	2	3	42	1	0	0	0	0	0	0	0	1	14786	668	24	4		4	SMARCAL1	2	217279802	Silent	SNP	C	TCGA-A4-8312-01A-11D-2396-08	40226074	217279802	25919571	7	2695											
DNAH1	25981	hgsc.bcm.edu	37	3	52431781	52431781	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	52431781	T	A	52431781	3	1	42	1	0	0	0	0	1	0	0	0	4599	1580	55	5	12136	5	DNAH1	3	52431781	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08		52431781	145590649	8	2696											
VPS8	23355	hgsc.bcm.edu	37	3	184717520	184717520	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	G	184717520	C	G	184717520	3	3	42	1	0	0	0	0	1	0	0	0	17230	477	17	4	4043	4	VPS8	3	184717520	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	132285739	184717520	13304910	9	2697											
LYRM7	90624	hgsc.bcm.edu	37	5	130517930	130517930	+	Missense_Mutation	SNP	A	A	C	rs200336982		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	130517930	A	C	130517930	3	2	42	1	0	0	0	0	1	0	0	0	9130	101	4	5	110	5	LYRM7	5	130517930	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08		130517930	50397330	10	2698											
ANXA6	309	hgsc.bcm.edu	37	5	150518240	150518240	+	Nonsense_Mutation	SNP	G	G	T	rs188111044	by1000genomes;alternate_allele	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	150518240	G	T	150518240	4	4	42	1	0	0	0	0	0	1	0	0	722	1072	37	4	1792	4	ANXA6	5	150518240	Nonsense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08	20000310	150518240	30397020	11	2699											
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu	37	6	36842542	36842542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	36842542	C	T	36842542	3	4	42	1	0	0	0	0	1	0	0	0	12336	739	26	2	509	2	PPIL1	6	36842542	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08		36842542	134272525	12	2700											
TYW1	55253	hgsc.bcm.edu	37	7	66474575	66474575	+	Silent	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	66474575	C	T	66474575	2	4	42	1	0	0	0	0	0	0	0	1	16830	883	31	1		1	TYW1	7	66474575	Silent	SNP	C	TCGA-A4-8312-01A-11D-2396-08		66474575	92664088	13	2701											
SEMA3E	9723	hgsc.bcm.edu	37	7	83023612	83023612	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	G	83023612	C	G	83023612	5	3	42	1	0	0	0	0	0	0	1	0	14041	521	18	4	846	4	SEMA3E	7	83023612	Splice_Site	SNP	C	TCGA-A4-8312-01A-11D-2396-08	16549037	83023612	76115051	14	2702											
MBLAC1	255374	hgsc.bcm.edu	37	7	99725439	99725439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	99725439	G	A	99725439	3	1	42	1	0	0	0	0	1	0	0	0	9358	1117	39	1	423	1	MBLAC1	7	99725439	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08	16701827	99725439	59413224	15	2703											
FBXW2	26190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123527053	123527053	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	123527053	G	A	123527053	2	1	42	1	0	0	0	0	0	0	0	1	5773	1368	48	2		2	FBXW2	9	123527053	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08		123527053	17686378	16	2704											
TAF10	6881	hgsc.bcm.edu	37	11	6632632	6632632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	G	6632632	A	G	6632632	3	3	42	1	0	0	0	0	1	0	0	0	15526	304	11	3	229	3	TAF10	11	6632632	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08		6632632	128373884	17	2705											
LRFN4	78999	hgsc.bcm.edu	37	11	66627272	66627272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	66627272	T	A	66627272	3	1	42	1	0	0	0	0	1	0	0	0	8947	1580	55	5	1520	5	LRFN4	11	66627272	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08	59994640	66627272	68379244	18	2706											
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102826393	102826393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	102826393	C	A	102826393	3	1	42	1	0	0	0	0	1	0	0	0	9659	856	30	4	1413	4	MMP13	11	102826393	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	36199121	102826393	32180123	19	2707											
GRAMD1B	57476	hgsc.bcm.edu	37	11	123448255	123448255	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	123448255	G	A	123448255	2	1	42	1	0	0	0	0	0	0	0	1	6755	1020	36	2		2	GRAMD1B	11	123448255	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	20621862	123448255	11558261	20	2708											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu	37	12	2614092	2614092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	2614092	G	T	2614092	3	4	42	1	0	0	0	0	1	0	0	0	2542	1261	44	4	1336	4	CACNA1C	12	2614092	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08		2614092	131237803	21	2709											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	25398284	C	T	25398284	3	4	42	1	0	0	0	0	1	0	0	0	8445	507	18	2	671	2	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	22784192	25398284	108453611	22	2710											
BICD1	636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	32491723	32491724	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	-	32491724	AT	-	32491723	7	5	42	1	0	1	0	1	0	0	0	0	1428	98	4	0	2604	0	BICD1	12	32491723	Frame_Shift_Del	DEL	AT	TCGA-A4-8312-01A-11D-2396-08	7093439	32491723	101360172	23	2711											
TUBA1B	10376	hgsc.bcm.edu	37	12	49522587	49522587	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	49522587	G	A	49522587	2	1	42	1	0	0	0	0	0	0	0	1	16756	1335	47	2		2	TUBA1B	12	49522587	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	17030864	49522587	84329308	24	2712											
RAD9B	144715	hgsc.bcm.edu	37	12	110960047	110960047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	110960047	A	C	110960047	3	2	42	1	0	0	0	0	1	0	0	0	13009	14	1	5	994	5	RAD9B	12	110960047	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	61437460	110960047	22891848	25	2713											
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	29599704	29599704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	29599704	C	T	29599704	3	4	42	1	0	0	0	0	1	0	0	0	9973	893	31	1	901	1	MTUS2	13	29599704	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08		29599704	85570174	26	2714											
NYNRIN	57523	hgsc.bcm.edu	37	14	24879003	24879003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	24879003	T	C	24879003	3	2	42	1	0	0	0	0	1	0	0	0	10803	1638	57	3	2013	3	NYNRIN	14	24879003	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08		24879003	82470537	27	2715											
ARHGAP5	394	hgsc.bcm.edu	37	14	32561433	32561433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	G	32561433	A	G	32561433	3	3	42	1	0	0	0	0	1	0	0	0	886	391	14	3	1560	3	ARHGAP5	14	32561433	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	7682430	32561433	74788107	28	2716											
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70527578	70527578	+	Silent	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	70527578	C	T	70527578	2	4	42	1	0	0	0	0	0	0	0	1	14721	871	31	1		1	SLC8A3	14	70527578	Silent	SNP	C	TCGA-A4-8312-01A-11D-2396-08	37966145	70527578	36821962	29	2717											
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	92470654	92470654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	92470654	T	A	92470654	3	1	42	1	0	0	0	0	1	0	0	0	16567	1606	56	5	2317	5	TRIP11	14	92470654	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08	21943076	92470654	14878886	30	2718											
ADSSL1	122622	hgsc.bcm.edu	37	14	105196230	105196230	+	Missense_Mutation	SNP	A	A	G	rs80097179	byfrequency;alternate_allele	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	G	105196230	A	G	105196230	3	3	42	1	0	0	0	0	1	0	0	0	348	217	8	3	199	3	ADSSL1	14	105196230	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	12725576	105196230	2153310	31	2719											
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25972305	25972305	+	Splice_Site	SNP	A	A	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	25972305	A	T	25972305	5	4	42	1	0	0	0	0	0	0	1	0	1116	405	14	5	3722	5	ATP10A	15	25972305	Splice_Site	SNP	A	TCGA-A4-8312-01A-11D-2396-08		25972305	76559087	32	2720											
AMDHD2	51005	hgsc.bcm.edu	37	16	2580428	2580428	+	Nonsense_Mutation	SNP	C	C	T	rs141294706		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	2580428	C	T	2580428	4	4	42	1	0	0	0	0	0	1	0	0	568	885	31	1	1533	1	AMDHD2	16	2580428	Nonsense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08		2580428	87774325	33	2721											
SMG1	23049	hgsc.bcm.edu	37	16	18849419	18849419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	18849419	G	C	18849419	3	2	42	1	0	0	0	0	1	0	0	0	14808	1328	46	4	3731	4	SMG1	16	18849419	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08	16268991	18849419	71505334	34	2722											
LOC100132247	0	broad.mit.edu	37	16	22545578	22545580	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	ATA	ATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	-	22545580	ATA	-	22545578	7	5	42	1	0	1	0	1	0	0	0	0	8875	333	12	0	1300	0	LOC100132247	16	22545578	In_Frame_Del	DEL	ATA	TCGA-A4-8312-01A-11D-2396-08	3696159	22545578	67809175	35	2723											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30718524	30718524	+	Silent	SNP	G	G	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	30718524	G	T	30718524	2	4	42	1	0	0	0	0	0	0	0	1	15147	1161	41	4		4	SRCAP	16	30718524	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	8172946	30718524	59636229	36	2724											
SRCAP	10847	bcgsc.ca	37	16	30727477	30727477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	30727477	T	C	30727477	3	2	42	1	0	0	0	0	1	0	0	0	15147	1551	54	3	2642	3	SRCAP	16	30727477	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08	8953	30727477	59627276	37	2725											
TBC1D29	26083	hgsc.bcm.edu	37	17	28890334	28890334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	28890334	G	A	28890334	3	1	42	1	0	0	0	0	1	0	0	0	15630	1000	35	2	362	2	TBC1D29	17	28890334	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08		28890334	52304876	38	2726											
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34261844	34261844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	34261844	C	T	34261844	3	4	42	1	0	0	0	0	1	0	0	0	9141	681	24	2	47	2	LYZL6	17	34261844	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	5371510	34261844	46933366	39	2727											
CDC27	996	hgsc.bcm.edu	37	17	45234324	45234324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	45234324	C	T	45234324	3	4	42	1	0	0	0	0	1	0	0	0	3068	884	31	1	1747	1	CDC27	17	45234324	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	10972480	45234324	35960886	40	2728											
PHOSPHO1	162466	broad.mit.edu	37	17	47302352	47302352	+	Silent	SNP	G	G	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	47302352	G	T	47302352	2	4	42	1	0	0	0	0	0	0	0	1	11863	1103	39	4		4	PHOSPHO1	17	47302352	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	2068028	47302352	33892858	41	2729											
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48600413	48600413	+	Silent	SNP	A	A	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	48600413	A	T	48600413	2	4	42	1	0	0	0	0	0	0	0	1	10026	262	10	5		5	MYCBPAP	17	48600413	Silent	SNP	A	TCGA-A4-8312-01A-11D-2396-08	1298061	48600413	32594797	42	2730											
GRIN2D	2906	ucsc.edu;bcgsc.ca	37	19	48908457	48908457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	A	48908457	G	A	48908457	3	1	42	1	0	0	0	0	1	0	0	0	6789	1203	42	2	938	2	GRIN2D	19	48908457	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08		48908457	10220526	43	2731											
ZNF497	162968	hgsc.bcm.edu	37	19	58867849	58867849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	58867849	G	C	58867849	3	2	42	1	0	0	0	0	1	0	0	0	17958	1203	42	4	347	4	ZNF497	19	58867849	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08	9959392	58867849	261134	44	2732											
SLMO2	51012	hgsc.bcm.edu	37	20	57611524	57611524	+	Splice_Site	SNP	A	A	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	57611524	A	C	57611524	5	2	42	1	0	0	0	0	0	0	1	0	14764	405	14	5	125	5	SLMO2	20	57611524	Splice_Site	SNP	A	TCGA-A4-8312-01A-11D-2396-08		57611524	5413996	45	2733											
SLMO2	51012	hgsc.bcm.edu	37	20	57611629	57611629	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	T	57611629	C	T	57611629	5	4	42	1	0	0	0	0	0	0	1	0	14764	927	32	2	230	2	SLMO2	20	57611629	Splice_Site	SNP	C	TCGA-A4-8312-01A-11D-2396-08	105	57611629	5413891	46	2734											
PHKA2	5256	bcgsc.ca	37	X	18972370	18972370	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	G	18972370	A	G	18972370	5	3	42	1	0	0	0	0	0	0	1	0	11851	405	14	3	3596	3	PHKA2	23	18972370	Splice_Site	SNP	A	TCGA-A4-8312-01A-11D-2396-08		18972370	136298190	47	2735											
RNF128	79589	hgsc.bcm.edu	37	X	106031218	106031218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C	106031218	T	C	106031218	3	2	42	1	0	0	0	0	1	0	0	0	13449	1435	50	3	1299	3	RNF128	23	106031218	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08	87058848	106031218	49239342	48	2736											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27107195	27107195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	27107195	C	A	27107195	4	1	43	1	0	0	0	0	0	1	0	0	913	838	29	4	6884	4	ARID1A	1	27107195	Nonsense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08		27107195	222143426	1	2737											
AMY1C	278	hgsc.bcm.edu	37	1	104231690	104231691	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	104231691	-	A	104231690	7	5	43	1	0	1	1	0	0	0	0	0	593	1165	41	0	1883	0	AMY1C	1	104231690	Frame_Shift_Ins	INS	-	TCGA-A4-8515-01A-11D-2396-08	77124495	104231690	145018931	2	2738											
C1orf194	127003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109649721	109649721	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	109649721	G	A	109649721	2	1	43	1	0	0	0	0	0	0	0	1	2027	1165	41	2		2	C1orf194	1	109649721	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	5418031	109649721	139600900	3	2739											
RFX5	5993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151314667	151314667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	151314667	G	T	151314667	3	4	43	1	0	0	0	0	1	0	0	0	13279	1232	43	4	8	4	RFX5	1	151314667	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	41664946	151314667	97935954	4	2740											
ASH1L	55870	broad.mit.edu	37	1	155324299	155324299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	155324299	T	C	155324299	3	2	43	1	0	0	0	0	1	0	0	0	1041	1493	52	3	1768	3	ASH1L	1	155324299	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	4009632	155324299	93926322	5	2741											
CENPL	91687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	173772191	173772191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	173772191	G	T	173772191	3	4	43	1	0	0	0	0	1	0	0	0	3238	1165	41	4	169	4	CENPL	1	173772191	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	18447892	173772191	75478430	6	2742											
PIK3C2B	5287	bcgsc.ca	37	1	204412626	204412626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	204412626	C	A	204412626	3	1	43	1	0	0	0	0	1	0	0	0	11917	564	20	4	1997	4	PIK3C2B	1	204412626	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	30640435	204412626	44837995	7	2743											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216017693	216017693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	216017693	A	T	216017693	3	4	43	1	0	0	0	0	1	0	0	0	17048	214	8	5	6515	5	USH2A	1	216017693	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	11605067	216017693	33232928	8	2744											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232650317	232650317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	232650317	G	A	232650317	3	1	43	1	0	0	0	0	1	0	0	0	14343	1116	39	1	4483	1	SIPA1L2	1	232650317	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	16632624	232650317	16600304	9	2745											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	29297095	29297096	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	29297096	-	A	29297095	7	5	43	1	0	1	1	0	0	0	0	0	2193	1741	61	0	3841	0	C2orf71	2	29297095	Frame_Shift_Ins	INS	-	TCGA-A4-8515-01A-11D-2396-08		29297095	213902278	10	2746											
PELI1	57162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	64323347	64323347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	64323347	G	A	64323347	3	1	43	1	0	0	0	0	1	0	0	0	11728	1174	41	2	662	2	PELI1	2	64323347	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	35026252	64323347	178876026	11	2747											
NCK2	8440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	106498221	106498221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	106498221	A	G	106498221	3	3	43	1	0	0	0	0	1	0	0	0	10227	217	8	3	670	3	NCK2	2	106498221	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	42174874	106498221	136701152	12	2748											
ZC3H6	376940	ucsc.edu	37	2	113069433	113069433	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	113069433	G	A	113069433	2	1	43	1	0	0	0	0	0	0	0	1	17583	1045	37	1		1	ZC3H6	2	113069433	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	6571212	113069433	130129940	13	2749											
CCDC108	255101	bcgsc.ca	37	2	219886565	219886565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	219886565	T	G	219886565	3	3	43	1	0	0	0	0	1	0	0	0	2745	1696	59	5	2782	5	CCDC108	2	219886565	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	106817132	219886565	23312808	14	2750											
COL4A4	1286	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	227872789	227872789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	227872789	A	G	227872789	3	3	43	1	0	0	0	0	1	0	0	0	3695	333	12	3	326	3	COL4A4	2	227872789	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	7986224	227872789	15326584	15	2751											
RAD18	56852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	8955405	8955406	+	Splice_Site	INS	-	-	TG	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	TG	8955406	-	TG	8955405	8	5	43	1	0	1	1	0	0	0	1	0	12993	811	28	0	622	0	RAD18	3	8955405	Splice_Site	INS	-	TCGA-A4-8515-01A-11D-2396-08		8955405	189067025	16	2752											
IQSEC1	9922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12957106	12957106	+	Silent	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	12957106	C	T	12957106	2	4	43	1	0	0	0	0	0	0	0	1	7824	581	21	2		2	IQSEC1	3	12957106	Silent	SNP	C	TCGA-A4-8515-01A-11D-2396-08	4001701	12957106	185065324	17	2753											
GOLGA4	2803	broad.mit.edu;bcgsc.ca	37	3	37369907	37369907	+	Silent	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	37369907	A	G	37369907	2	3	43	1	0	0	0	0	0	0	0	1	6562	289	10	3		3	GOLGA4	3	37369907	Silent	SNP	A	TCGA-A4-8515-01A-11D-2396-08	24412801	37369907	160652523	18	2754											
PLXNB1	5364	bcgsc.ca	37	3	48451952	48451952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	48451952	A	C	48451952	3	2	43	1	0	0	0	0	1	0	0	0	12130	159	6	5	1011	5	PLXNB1	3	48451952	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	11082045	48451952	149570478	19	2755											
MASP1	5648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	187009418	187009418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	187009418	C	G	187009418	3	3	43	1	0	0	0	0	1	0	0	0	9329	826	29	4	3105	4	MASP1	3	187009418	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	138557466	187009418	11013012	20	2756											
UGDH	7358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39515753	39515753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	39515753	A	G	39515753	3	3	43	1	0	0	0	0	1	0	0	0	16952	246	9	3	1310	3	UGDH	4	39515753	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08		39515753	151638523	21	2757											
NAF1	92345	broad.mit.edu	37	4	164050124	164050124	+	Silent	SNP	T	T	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	164050124	T	G	164050124	2	3	43	1	0	0	0	0	0	0	0	1	10147	1683	59	5		5	NAF1	4	164050124	Silent	SNP	T	TCGA-A4-8515-01A-11D-2396-08	124534371	164050124	27104152	22	2758											
CCDC110	256309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186380257	186380257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	186380257	C	A	186380257	3	1	43	1	0	0	0	0	1	0	0	0	2749	565	20	4	1025	4	CCDC110	4	186380257	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	22330133	186380257	4774019	23	2759											
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186545386	186545386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	186545386	G	T	186545386	3	4	43	1	0	0	0	0	1	0	0	0	14941	1165	41	4	2153	4	SORBS2	4	186545386	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	165129	186545386	4608890	24	2760											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	7886796	7886796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	7886796	A	G	7886796	3	3	43	1	0	0	0	0	1	0	0	0	9968	101	4	3	1237	3	MTRR	5	7886796	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08		7886796	173028464	25	2761											
P4HA2	8974	broad.mit.edu	37	5	131546092	131546092	+	Silent	SNP	G	G	T	rs147510145		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	131546092	G	T	131546092	2	4	43	1	0	0	0	0	0	0	0	1	11364	1103	39	4		4	P4HA2	5	131546092	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	123659296	131546092	49369168	26	2762											
HLA-B	3106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31323288	31323288	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	31323288	G	-	31323288	7	5	43	1	0	1	0	1	0	0	0	0	7203	1000	35	0	403	0	HLA-B	6	31323288	Frame_Shift_Del	DEL	G	TCGA-A4-8515-01A-11D-2396-08		31323288	139791779	27	2763											
FAM46A	55603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	82461655	82461655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	82461655	C	A	82461655	3	1	43	1	0	0	0	0	1	0	0	0	5572	624	22	4	1132	4	FAM46A	6	82461655	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	51138367	82461655	88653412	28	2764											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90411386	90411386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	90411386	T	A	90411386	3	1	43	1	0	0	0	0	1	0	0	0	9422	1783	62	5	8664	5	MDN1	6	90411386	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	7949731	90411386	80703681	29	2765											
ECHDC1	55862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	127611395	127611395	+	Silent	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	127611395	T	C	127611395	2	2	43	1	0	0	0	0	0	0	0	1	4895	1432	50	3		3	ECHDC1	6	127611395	Silent	SNP	T	TCGA-A4-8515-01A-11D-2396-08	37200009	127611395	43503672	30	2766											
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	159401839	159401839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	159401839	C	T	159401839	3	4	43	1	0	0	0	0	1	0	0	0	13718	855	30	2	442	2	RSPH3	6	159401839	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	31790444	159401839	11713228	31	2767											
TMEM184A	202915	broad.mit.edu	37	7	1586662	1586663	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	GCC	1586663	-	GCC	1586662	7	5	43	1	0	1	1	0	0	0	0	0	16116	1580	55	0	77	0	TMEM184A	7	1586662	In_Frame_Ins	INS	-	TCGA-A4-8515-01A-11D-2396-08		1586662	157552001	32	2768											
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6639468	6639468	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	6639468	A	T	6639468	3	4	43	1	0	0	0	0	1	0	0	0	2383	217	8	5	603	5	C7orf26	7	6639468	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	5052806	6639468	152499195	33	2769											
HDAC9	9734	broad.mit.edu;bcgsc.ca	37	7	18625059	18625059	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	18625059	C	T	18625059	4	4	43	1	0	0	0	0	0	1	0	0	7021	595	21	2	184	2	HDAC9	7	18625059	Nonsense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	11985591	18625059	140513604	34	2770											
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	35707133	35707133	+	Silent	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	35707133	A	G	35707133	2	3	43	1	0	0	0	0	0	0	0	1	7071	30	2	3		3	HERPUD2	7	35707133	Silent	SNP	A	TCGA-A4-8515-01A-11D-2396-08	17082074	35707133	123431530	35	2771											
EPHB4	2050	broad.mit.edu;bcgsc.ca	37	7	100404084	100404104	+	In_Frame_Del	DEL	CATCACCTCCCACATCACAAT	CATCACCTCCCACATCACAAT	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	CATCACCTCCCACATCACAAT	CATCACCTCCCACATCACAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	100404104	CATCACCTCCCACATCACAAT	-	100404084	7	5	43	1	0	1	0	1	0	0	0	0	5179	478	17	0	537	0	EPHB4	7	100404084	In_Frame_Del	DEL	CATCACCTCCCACATCACAAT	TCGA-A4-8515-01A-11D-2396-08	64696951	100404084	58734579	36	2772											
MUC17	140453	broad.mit.edu	37	7	100681919	100681919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	100681919	C	T	100681919	3	4	43	1	0	0	0	0	1	0	0	0	9981	739	26	2	7232	2	MUC17	7	100681919	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	277835	100681919	58456744	37	2773											
PCMTD1	115294	broad.mit.edu	37	8	52733204	52733204	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	52733204	C	G	52733204	3	3	43	1	0	0	0	0	1	0	0	0	11593	826	29	4	296	4	PCMTD1	8	52733204	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08		52733204	93630818	38	2774											
NSMAF	8439	broad.mit.edu	37	8	59498243	59498243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	59498243	G	T	59498243	3	4	43	1	0	0	0	0	1	0	0	0	10681	1319	46	4	134	4	NSMAF	8	59498243	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	6765039	59498243	86865779	39	2775											
WWP1	11059	ucsc.edu	37	8	87392964	87392964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	87392964	C	A	87392964	3	1	43	1	0	0	0	0	1	0	0	0	17427	739	26	4	86	4	WWP1	8	87392964	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	27894721	87392964	58971058	40	2776											
TAF1L	138474	bcgsc.ca	37	9	32635283	32635283	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	32635283	A	C	32635283	3	2	43	1	0	0	0	0	1	0	0	0	15535	159	6	5	5189	5	TAF1L	9	32635283	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08		32635283	108578148	41	2777											
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35560975	35560975	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	35560975	G	A	35560975	2	1	43	1	0	0	0	0	0	0	0	1	13764	1277	45	2		2	RUSC2	9	35560975	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	2925692	35560975	105652456	42	2778											
TRIM14	9830	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	100862406	100862406	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	100862406	A	-	100862406	7	5	43	1	0	1	0	1	0	0	0	0	16501	246	9	0	1000	0	TRIM14	9	100862406	Frame_Shift_Del	DEL	A	TCGA-A4-8515-01A-11D-2396-08	65301431	100862406	40351025	43	2779											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128117063	128117063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	128117063	G	A	128117063	3	1	43	1	0	0	0	0	1	0	0	0	6246	1377	48	2	3867	2	GAPVD1	9	128117063	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	27254657	128117063	13096368	44	2780											
ARRDC1	92714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140508526	140508526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	140508526	C	A	140508526	3	1	43	1	0	0	0	0	1	0	0	0	982	796	28	4	496	4	ARRDC1	9	140508526	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	12391463	140508526	704905	45	2781											
UNC5B	219699	bcgsc.ca	37	10	73050759	73050759	+	Missense_Mutation	SNP	T	T	G	rs117156661		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	73050759	T	G	73050759	3	3	43	1	0	0	0	0	1	0	0	0	17004	1696	59	5	1221	5	UNC5B	10	73050759	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08		73050759	62483988	46	2782											
GBF1	8729	bcgsc.ca	37	10	104120011	104120011	+	Silent	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	104120011	T	C	104120011	2	2	43	1	0	0	0	0	0	0	0	1	6278	1432	50	3		3	GBF1	10	104120011	Silent	SNP	T	TCGA-A4-8515-01A-11D-2396-08	31069252	104120011	31414736	47	2783											
CDHR5	53841	broad.mit.edu	37	11	618807	618807	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	618807	G	-	618807	7	5	43	1	0	1	0	1	0	0	0	0	3124	1335	47	0	797	0	CDHR5	11	618807	Frame_Shift_Del	DEL	G	TCGA-A4-8515-01A-11D-2396-08		618807	134387709	48	2784											
NAV2	89797	broad.mit.edu	37	11	19954837	19954837	+	Silent	SNP	G	G	A	rs143560669		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	19954837	G	A	19954837	2	1	43	1	0	0	0	0	0	0	0	1	10191	1074	38	1		1	NAV2	11	19954837	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	19336030	19954837	115051679	49	2785											
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47745663	47745663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	47745663	G	T	47745663	3	4	43	1	0	0	0	0	1	0	0	0	5974	1377	48	4	688	4	FNBP4	11	47745663	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	27790826	47745663	87260853	50	2786	32	2									
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47745665	47745665	+	Silent	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	47745665	A	G	47745665	2	3	43	1	0	0	0	0	0	0	0	1	5974	407	15	3		3	FNBP4	11	47745665	Silent	SNP	A	TCGA-A4-8515-01A-11D-2396-08	2	47745665	87260851	51	2787	32	2									
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48142761	48142761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	48142761	A	G	48142761	3	3	43	1	0	0	0	0	1	0	0	0	12817	159	6	3	573	3	PTPRJ	11	48142761	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	397096	48142761	86863755	52	2788											
GAB2	9846	bcgsc.ca	37	11	77937657	77937657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	77937657	C	G	77937657	3	3	43	1	0	0	0	0	1	0	0	0	6156	768	27	4	997	4	GAB2	11	77937657	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	29794896	77937657	57068859	53	2789											
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113103986	113103986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	113103986	G	T	113103986	3	4	43	1	0	0	0	0	1	0	0	0	10209	1357	47	4	1691	4	NCAM1	11	113103986	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	35166329	113103986	21902530	54	2790											
CADM1	23705	bcgsc.ca	37	11	115049423	115049423	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	115049423	A	C	115049423	3	2	43	1	0	0	0	0	1	0	0	0	2568	159	6	5	185	5	CADM1	11	115049423	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	1945437	115049423	19957093	55	2791											
CEP164	22897	bcgsc.ca	37	11	117280516	117280516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	117280516	A	C	117280516	3	2	43	1	0	0	0	0	1	0	0	0	3251	159	6	5	4041	5	CEP164	11	117280516	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	2231093	117280516	17726000	56	2792											
PUS3	83480	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	125765906	125765922	+	Frame_Shift_Del	DEL	TCTCTTCAATGGTATTA	TCTCTTCAATGGTATTA	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	TCTCTTCAATGGTATTA	TCTCTTCAATGGTATTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	125765922	TCTCTTCAATGGTATTA	-	125765906	7	5	43	1	0	1	0	1	0	0	0	0	12845	1792	62	0	1183	0	PUS3	11	125765906	Frame_Shift_Del	DEL	TCTCTTCAATGGTATTA	TCGA-A4-8515-01A-11D-2396-08	8485390	125765906	9240610	57	2793											
LAG3	3902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6886460	6886460	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	6886460	C	G	6886460	3	3	43	1	0	0	0	0	1	0	0	0	8607	855	30	4	1110	4	LAG3	12	6886460	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08		6886460	126965435	58	2794											
PRB4	5545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11461501	11461501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	11461501	C	A	11461501	3	1	43	1	0	0	0	0	1	0	0	0	12455	855	30	4	331	4	PRB4	12	11461501	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	4575041	11461501	122390394	59	2795											
KRR1	11103	hgsc.bcm.edu	37	12	75900389	75900560	+	Frame_Shift_Del	DEL	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	75900560	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	-	75900389	7	5	43	1	0	1	0	1	0	0	0	0	8453	753	26	0	779	0	KRR1	12	75900389	Frame_Shift_Del	DEL	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	TCGA-A4-8515-01A-11D-2396-08	64438888	75900389	57951506	60	2796											
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	83290130	83290130	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	83290130	G	A	83290130	2	1	43	1	0	0	0	0	0	0	0	1	16273	1364	48	2		2	TMTC2	12	83290130	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	7389741	83290130	50561765	61	2797											
BTG1	694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	92537939	92537939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	92537939	T	C	92537939	3	2	43	1	0	0	0	0	1	0	0	0	1555	1580	55	3	86	3	BTG1	12	92537939	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	9247809	92537939	41313956	62	2798											
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	94976205	94976205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	94976205	T	A	94976205	3	1	43	1	0	0	0	0	1	0	0	0	16006	1609	56	5	1257	5	TMCC3	12	94976205	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	2438266	94976205	38875690	63	2799											
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	95886864	95886865	+	Missense_Mutation	DNP	CT	CT	AG	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	AG	95886865	CT	AG	95886864	3	1	43	1	0	0	0	0	1	0	0	0	55	695	24	4	3607	4	ABCC4	13	95886864	Missense_Mutation	DNP	CT	TCGA-A4-8515-01A-11D-2396-08		95886864	19283014	64	2800											
TMCO3	55002	bcgsc.ca	37	13	114188424	114188425	+	In_Frame_Ins	INS	-	-	TTTTTTTTTTTT	rs141899812	bycluster;by1000genomes;alternate_allele	TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	TTTTTTTTTTTT	114188425	-	TTTTTTTTTTTT	114188424	7	5	43	1	0	1	1	0	0	0	0	0	16009	1261	44	0	1438	0	TMCO3	13	114188424	In_Frame_Ins	INS	-	TCGA-A4-8515-01A-11D-2396-08	18301560	114188424	981454	65	2801											
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	66031104	66031104	+	Silent	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	66031104	A	G	66031104	2	3	43	1	0	0	0	0	0	0	0	1	4435	446	16	3		3	DENND4A	15	66031104	Silent	SNP	A	TCGA-A4-8515-01A-11D-2396-08		66031104	36500288	66	2802											
SENP8	123228	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	72432229	72432229	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	72432229	G	-	72432229	7	5	43	1	0	1	0	1	0	0	0	0	14065	971	34	0	267	0	SENP8	15	72432229	Frame_Shift_Del	DEL	G	TCGA-A4-8515-01A-11D-2396-08	6401125	72432229	30099163	67	2803											
C15orf59	388135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74032301	74032301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	74032301	A	T	74032301	3	4	43	1	0	0	0	0	1	0	0	0	1809	188	7	5	46	5	C15orf59	15	74032301	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	1600072	74032301	28499091	68	2804											
ACSM1	116285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20682868	20682868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	20682868	G	T	20682868	3	4	43	1	0	0	0	0	1	0	0	0	182	1232	43	4	1036	4	ACSM1	16	20682868	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08		20682868	69671885	69	2805											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1633711	1633711	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	1633711	G	A	1633711	2	1	43	1	0	0	0	0	0	0	0	1	17342	962	34	2		2	WDR81	17	1633711	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08		1633711	79561499	70	2806											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	3924472	3924472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	3924472	T	-	3924472	7	5	43	1	0	1	0	1	0	0	0	0	18267	1609	56	0	1574	0	ZZEF1	17	3924472	Frame_Shift_Del	DEL	T	TCGA-A4-8515-01A-11D-2396-08	2290761	3924472	77270738	71	2807											
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4445915	4445915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	4445915	T	C	4445915	3	2	43	1	0	0	0	0	1	0	0	0	10015	1696	59	3	1036	3	MYBBP1A	17	4445915	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	521443	4445915	76749295	72	2808											
ALOX15B	247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7948982	7948982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	7948982	C	T	7948982	3	4	43	1	0	0	0	0	1	0	0	0	539	623	22	2	1208	2	ALOX15B	17	7948982	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	3503067	7948982	73246228	73	2809											
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10433386	10433386	+	Silent	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	10433386	G	A	10433386	2	1	43	1	0	0	0	0	0	0	0	1	10042	1103	39	1		1	MYH2	17	10433386	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	2484404	10433386	70761824	74	2810											
TRIM37	4591	broad.mit.edu;bcgsc.ca	37	17	57078973	57078974	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	57078974	TG	-	57078973	7	5	43	1	0	1	0	1	0	0	0	0	16523	1580	55	0	112	0	TRIM37	17	57078973	Frame_Shift_Del	DEL	TG	TCGA-A4-8515-01A-11D-2396-08	46645587	57078973	24116237	75	2811											
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61561775	61561775	+	Silent	SNP	G	G	C	rs137910205	alternate_allele	TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	61561775	G	C	61561775	2	2	43	1	0	0	0	0	0	0	0	1	136	1074	38	4		4	ACE	17	61561775	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	4482802	61561775	19633435	76	2812											
SMCHD1	23347	broad.mit.edu	37	18	2666935	2666935	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	2666935	C	-	2666935	7	5	43	1	0	1	0	1	0	0	0	0	14801	797	28	0	339	0	SMCHD1	18	2666935	Frame_Shift_Del	DEL	C	TCGA-A4-8515-01A-11D-2396-08		2666935	75410313	77	2813											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	5406855	5406855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	5406855	T	C	5406855	3	2	43	1	0	0	0	0	1	0	0	0	5156	1609	56	3	1021	3	EPB41L3	18	5406855	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	2739920	5406855	72670393	78	2814											
CABLES1	91768	broad.mit.edu	37	18	20716015	20716023	+	In_Frame_Del	DEL	GGCGCCGGC	GGCGCCGGC	-	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	GGCGCCGGC	GGCGCCGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	-	20716023	GGCGCCGGC	-	20716015	7	5	43	1	0	1	0	1	0	0	0	0	2531	1232	43	0	291	0	CABLES1	18	20716015	In_Frame_Del	DEL	GGCGCCGGC	TCGA-A4-8515-01A-11D-2396-08	15309160	20716015	57361233	79	2815											
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28660278	28660278	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	C	28660278	A	C	28660278	3	2	43	1	0	0	0	0	1	0	0	0	4768	101	4	5	1469	5	DSC2	18	28660278	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	7944263	28660278	49416970	80	2816											
ICAM5	7087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10403449	10403449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	10403449	A	G	10403449	3	3	43	1	0	0	0	0	1	0	0	0	7490	246	9	3	1141	3	ICAM5	19	10403449	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08		10403449	48725534	81	2817											
ZSWIM4	65249	ucsc.edu	37	19	13919690	13919690	+	Silent	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	13919690	C	A	13919690	2	1	43	1	0	0	0	0	0	0	0	1	18255	581	21	4		4	ZSWIM4	19	13919690	Silent	SNP	C	TCGA-A4-8515-01A-11D-2396-08	3516241	13919690	45209293	82	2818											
PEG3	5178	broad.mit.edu	37	19	57326548	57326548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	57326548	C	A	57326548	3	1	43	1	0	0	0	0	1	0	0	0	11727	478	17	4	1508	4	PEG3	19	57326548	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	43406858	57326548	1802435	83	2819											
CPNE1	8904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34215310	34215310	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	34215310	G	T	34215310	4	4	43	1	0	0	0	0	0	1	0	0	3813	1256	44	4	497	4	CPNE1	20	34215310	Nonsense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08		34215310	28810210	84	2820											
ROMO1	140823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34288799	34288799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	G	34288799	A	G	34288799	3	3	43	1	0	0	0	0	1	0	0	0	13535	217	8	3	217	3	ROMO1	20	34288799	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	73489	34288799	28736721	85	2821											
TAF4	6874	hgsc.bcm.edu	37	20	60639811	60639811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	60639811	C	A	60639811	3	1	43	1	0	0	0	0	1	0	0	0	15538	680	24	4	2261	4	TAF4	20	60639811	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	26351012	60639811	2385709	86	2822											
SON	6651	hgsc.bcm.edu	37	21	34948684	34948684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	34948684	G	A	34948684	3	1	43	1	0	0	0	0	1	0	0	0	14939	1174	41	2	7540	2	SON	21	34948684	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08		34948684	13181211	87	2823											
ZXDB	158586	hgsc.bcm.edu	37	X	57618845	57618845	+	Missense_Mutation	SNP	G	G	A	rs199513692		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	A	57618845	G	A	57618845	3	1	43	1	0	0	0	0	1	0	0	0	18263	1059	37	1	366	1	ZXDB	23	57618845	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08		57618845	97651715	88	2824											
GLUD2	2747	ucsc.edu	37	X	120182120	120182120	+	Silent	SNP	C	C	T	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	T	120182120	C	T	120182120	2	4	43	1	0	0	0	0	0	0	0	1	6484	639	23	1		1	GLUD2	23	120182120	Silent	SNP	C	TCGA-A4-8515-01A-11D-2396-08	62563275	120182120	35088440	89	2825											
SDC3	9672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31347253	31347253	+	Silent	SNP	G	G	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	31347253	G	T	31347253	2	4	44	1	0	0	0	0	0	0	0	1	13966	1335	47	4		4	SDC3	1	31347253	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08		31347253	217903368	1	2826											
PPIE	10450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40211152	40211152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	40211152	G	A	40211152	3	1	44	1	0	0	0	0	1	0	0	0	12332	1377	48	2	516	2	PPIE	1	40211152	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	8863899	40211152	209039469	2	2827											
CAP1	10487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40536545	40536545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	40536545	C	T	40536545	3	4	44	1	0	0	0	0	1	0	0	0	2621	478	17	2	1280	2	CAP1	1	40536545	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	325393	40536545	208714076	3	2828											
NRD1	4898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52256297	52256297	+	Nonsense_Mutation	SNP	C	C	A	rs147279713	alternate_allele	TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	52256297	C	A	52256297	4	1	44	1	0	0	0	0	0	1	0	0	10652	864	30	4	391	4	NRD1	1	52256297	Nonsense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	11719752	52256297	196994324	4	2829											
PRMT6	55170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	107600260	107600260	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	107600260	C	-	107600260	7	5	44	1	0	1	0	1	0	0	0	0	12550	855	30	0	925	0	PRMT6	1	107600260	Frame_Shift_Del	DEL	C	TCGA-A4-8517-01A-11D-2396-08	55343963	107600260	141650361	5	2830											
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110561173	110561173	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	110561173	G	A	110561173	5	1	44	1	0	0	0	0	0	0	1	0	410	956	33	2	1268	2	AHCYL1	1	110561173	Splice_Site	SNP	G	TCGA-A4-8517-01A-11D-2396-08	2960913	110561173	138689448	6	2831											
POLR3C	10623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145592731	145592731	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	145592731	G	-	145592731	7	5	44	1	0	1	0	1	0	0	0	0	12237	991	35	0	44	0	POLR3C	1	145592731	Frame_Shift_Del	DEL	G	TCGA-A4-8517-01A-11D-2396-08	35031558	145592731	103657890	7	2832											
SF3B4	10262	broad.mit.edu	37	1	149897857	149897857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	149897857	G	A	149897857	3	1	44	1	0	0	0	0	1	0	0	0	14166	1203	42	2	502	2	SF3B4	1	149897857	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	4305126	149897857	99352764	8	2833											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152188167	152188167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	152188167	A	G	152188167	3	3	44	1	0	0	0	0	1	0	0	0	7366	449	16	3	2618	3	HRNR	1	152188167	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	2290310	152188167	97062454	9	2834											
COPA	1314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160305059	160305059	+	Silent	SNP	A	A	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	160305059	A	G	160305059	2	3	44	1	0	0	0	0	0	0	0	1	3729	98	4	3		3	COPA	1	160305059	Silent	SNP	A	TCGA-A4-8517-01A-11D-2396-08	8116892	160305059	88945562	10	2835											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	9515054	9515054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	9515054	T	C	9515054	3	2	44	1	0	0	0	0	1	0	0	0	1011	1435	50	3	1793	3	ASAP2	2	9515054	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08		9515054	233684319	11	2836											
TCF23	150921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27373231	27373231	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	27373231	A	T	27373231	4	4	44	1	0	0	0	0	0	1	0	0	15704	131	5	5	469	5	TCF23	2	27373231	Nonsense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	17858177	27373231	215826142	12	2837											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54852000	54852000	+	Silent	SNP	C	C	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	54852000	C	T	54852000	2	4	44	1	0	0	0	0	0	0	0	1	15131	813	29	2		2	SPTBN1	2	54852000	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	27478769	54852000	188347373	13	2838											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109380509	109380509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	109380509	T	G	109380509	3	3	44	1	0	0	0	0	1	0	0	0	13041	1609	56	5	3592	5	RANBP2	2	109380509	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	54528509	109380509	133818864	14	2839											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141816463	141816463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	141816463	G	C	141816463	3	2	44	1	0	0	0	0	1	0	0	0	8962	1029	36	4	12734	4	LRP1B	2	141816463	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	32435954	141816463	101382910	15	2840			1	8		2	2	14	N	G_A	3.98936e-05
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141816476	141816476	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	141816476	A	T	141816476	3	4	44	1	0	0	0	0	1	0	0	0	8962	362	13	5	12747	5	LRP1B	2	141816476	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	13	141816476	101382897	16	2841			1	8		2	2	14	N	G_A	3.98936e-05
FBXO36	130888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	230861514	230861516	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	230861516	AAT	-	230861514	7	5	44	1	0	1	0	1	0	0	0	0	5752	130	5	0	263	0	FBXO36	2	230861514	In_Frame_Del	DEL	AAT	TCGA-A4-8517-01A-11D-2396-08	89045038	230861514	12337859	17	2842											
HYAL2	8692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50357591	50357591	+	Silent	SNP	C	C	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	50357591	C	T	50357591	2	4	44	1	0	0	0	0	0	0	0	1	7471	842	30	2		2	HYAL2	3	50357591	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08		50357591	147664839	18	2843											
CACNA1D	776	broad.mit.edu	37	3	53808687	53808687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	53808687	C	T	53808687	3	4	44	1	0	0	0	0	1	0	0	0	2543	768	27	1	4490	1	CACNA1D	3	53808687	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	3451096	53808687	144213743	19	2844											
MITF	4286	ucsc.edu	37	3	69988280	69988280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	69988280	C	T	69988280	3	4	44	1	0	0	0	0	1	0	0	0	9603	710	25	2	849	2	MITF	3	69988280	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	16179593	69988280	128034150	20	2845											
CEP63	80254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	134267996	134267996	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	134267996	A	-	134267996	7	5	44	1	0	1	0	1	0	0	0	0	3259	246	9	0	1194	0	CEP63	3	134267996	Frame_Shift_Del	DEL	A	TCGA-A4-8517-01A-11D-2396-08	64279716	134267996	63754434	21	2846											
MFN1	55669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179076735	179076735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	179076735	A	C	179076735	3	2	44	1	0	0	0	0	1	0	0	0	9530	333	12	5	366	5	MFN1	3	179076735	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	44808739	179076735	18945695	22	2847											
USP13	8975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179426711	179426711	+	Silent	SNP	C	C	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	179426711	C	A	179426711	2	1	44	1	0	0	0	0	0	0	0	1	17056	639	23	4		4	USP13	3	179426711	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	349976	179426711	18595719	23	2848											
CPN2	1370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194062198	194062198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	194062198	G	T	194062198	3	4	44	1	0	0	0	0	1	0	0	0	3812	1328	46	4	407	4	CPN2	3	194062198	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	14635487	194062198	3960232	24	2849											
ODAM	54959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	71064324	71064324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	71064324	T	A	71064324	3	1	44	1	0	0	0	0	1	0	0	0	10831	1464	51	5	422	5	ODAM	4	71064324	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08		71064324	120089952	25	2850											
SLC4A4	8671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	72429564	72429564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	72429564	A	G	72429564	3	3	44	1	0	0	0	0	1	0	0	0	14669	217	8	3	3365	3	SLC4A4	4	72429564	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	1365240	72429564	118724712	26	2851											
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	77661360	77661360	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	77661360	G	-	77661360	7	5	44	1	0	1	0	1	0	0	0	0	14308	1335	47	0	2052	0	SHROOM3	4	77661360	Frame_Shift_Del	DEL	G	TCGA-A4-8517-01A-11D-2396-08	5231796	77661360	113492916	27	2852											
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122724130	122724130	+	Silent	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	122724130	G	A	122724130	2	1	44	1	0	0	0	0	0	0	0	1	5323	1020	36	2		2	EXOSC9	4	122724130	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	45062770	122724130	68430146	28	2853											
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	70813231	70813231	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	70813231	T	A	70813231	3	1	44	1	0	0	0	0	1	0	0	0	1395	1696	59	5	5029	5	BDP1	5	70813231	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08		70813231	110102029	29	2854											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82836395	82836395	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	82836395	A	T	82836395	3	4	44	1	0	0	0	0	1	0	0	0	17150	179	7	5	7599	5	VCAN	5	82836395	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	12023164	82836395	98078865	30	2855											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140724915	140724915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	140724915	A	C	140724915	3	2	44	1	0	0	0	0	1	0	0	0	11562	159	6	5	1317	5	PCDHGA3	5	140724915	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	57888520	140724915	40190345	31	2856	33	2									
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140724920	140724920	+	Silent	SNP	G	G	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	140724920	G	T	140724920	2	4	44	1	0	0	0	0	0	0	0	1	11562	1306	46	4		4	PCDHGA3	5	140724920	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	5	140724920	40190340	32	2857	33	2									
TNIP1	10318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150444534	150444534	+	Silent	SNP	C	C	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	150444534	C	G	150444534	2	3	44	1	0	0	0	0	0	0	0	1	16326	842	30	4		4	TNIP1	5	150444534	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	9719614	150444534	30470726	33	2858											
WWC1	23286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167833322	167833322	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	167833322	A	C	167833322	3	2	44	1	0	0	0	0	1	0	0	0	17423	333	12	5	732	5	WWC1	5	167833322	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	17388788	167833322	13081938	34	2859											
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30865203	30865203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	30865203	C	A	30865203	3	1	44	1	0	0	0	0	1	0	0	0	4338	594	21	4	2117	4	DDR1	6	30865203	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08		30865203	140249864	35	2860											
KIFC1	3833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33365943	33365943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	33365943	G	T	33365943	3	4	44	1	0	0	0	0	1	0	0	0	8319	1014	35	4	156	4	KIFC1	6	33365943	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	2500740	33365943	137749124	36	2861											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43153712	43153713	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	CT	43153713	TC	CT	43153712	3	2	44	1	0	0	0	0	1	0	0	0	4063	1783	62	3	780	3	CUL9	6	43153712	Missense_Mutation	DNP	TC	TCGA-A4-8517-01A-11D-2396-08	9787769	43153712	127961355	37	2862											
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151117019	151117019	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	151117019	T	G	151117019	3	3	44	1	0	0	0	0	1	0	0	0	12075	1638	57	5	624	5	PLEKHG1	6	151117019	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	107963307	151117019	19998048	38	2863											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168349109	168349109	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	168349109	A	T	168349109	3	4	44	1	0	0	0	0	1	0	0	0	9636	246	9	5	3871	5	MLLT4	6	168349109	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	17232090	168349109	2765958	39	2864											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44747234	44747234	+	Silent	SNP	T	T	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	44747234	T	C	44747234	2	2	44	1	0	0	0	0	0	0	0	1	10846	1461	51	3		3	OGDH	7	44747234	Silent	SNP	T	TCGA-A4-8517-01A-11D-2396-08		44747234	114391429	40	2865											
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu	37	7	73932549	73932549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	73932549	G	A	73932549	3	1	44	1	0	0	0	0	1	0	0	0	6875	1232	43	2	516	2	GTF2IRD1	7	73932549	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	29185315	73932549	85206114	41	2866											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149502569	149502569	+	Silent	SNP	C	C	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	149502569	C	A	149502569	2	1	44	1	0	0	0	0	0	0	0	1	15201	726	26	4		4	SSPO	7	149502569	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	75570020	149502569	9636094	42	2867											
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	156963038	156963038	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	156963038	T	A	156963038	4	1	44	1	0	0	0	0	0	1	0	0	16893	1821	63	5	250	5	UBE3C	7	156963038	Nonsense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	7460469	156963038	2175625	43	2868											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28991587	28991587	+	Silent	SNP	C	C	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	28991587	C	T	28991587	2	4	44	1	0	0	0	0	0	0	0	1	8282	755	27	1		1	KIF13B	8	28991587	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08		28991587	117372435	44	2869											
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	32467853	32467868	+	Frame_Shift_Del	DEL	AGGTGGCAATCAGAAT	AGGTGGCAATCAGAAT	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	AGGTGGCAATCAGAAT	AGGTGGCAATCAGAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	32467868	AGGTGGCAATCAGAAT	-	32467853	7	5	44	1	0	1	0	1	0	0	0	0	4377	304	11	0	701	0	DDX58	9	32467853	Frame_Shift_Del	DEL	AGGTGGCAATCAGAAT	TCGA-A4-8517-01A-11D-2396-08		32467853	108745578	45	2870											
SPTLC1	10558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	94821490	94821490	+	Silent	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	94821490	G	A	94821490	2	1	44	1	0	0	0	0	0	0	0	1	15135	1020	36	2		2	SPTLC1	9	94821490	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	62353637	94821490	46391941	46	2871											
OR1L8	138881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125330116	125330116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	125330116	C	T	125330116	3	4	44	1	0	0	0	0	1	0	0	0	10974	710	25	2	292	2	OR1L8	9	125330116	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	30508626	125330116	15883315	47	2872											
RBM17	84991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	6157469	6157469	+	Missense_Mutation	SNP	T	T	C	rs200401715		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	6157469	T	C	6157469	3	2	44	1	0	0	0	0	1	0	0	0	13132	1841	64	3	1198	3	RBM17	10	6157469	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08		6157469	129377278	48	2873											
NUDT5	11164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12226925	12226925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	12226925	C	G	12226925	3	3	44	1	0	0	0	0	1	0	0	0	10749	835	29	4	597	4	NUDT5	10	12226925	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	6069456	12226925	123307822	49	2874											
HSPA14	51182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	14896200	14896200	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	14896200	T	A	14896200	3	1	44	1	0	0	0	0	1	0	0	0	7414	1783	62	5	845	5	HSPA14	10	14896200	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	2669275	14896200	120638547	50	2875											
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61112192	61112192	+	Silent	SNP	C	C	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	61112192	C	A	61112192	2	1	44	1	0	0	0	0	0	0	0	1	5458	581	21	4		4	FAM13C	10	61112192	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	46215992	61112192	74422555	51	2876											
CPEB3	22849	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	93999658	93999658	+	Silent	SNP	A	A	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	93999658	A	C	93999658	2	2	44	1	0	0	0	0	0	0	0	1	3804	59	3	5		5	CPEB3	10	93999658	Silent	SNP	A	TCGA-A4-8517-01A-11D-2396-08	32887466	93999658	41535089	52	2877											
TLL2	7093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	98145849	98145849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	98145849	G	C	98145849	3	2	44	1	0	0	0	0	1	0	0	0	15958	1174	41	4	1099	4	TLL2	10	98145849	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	4146191	98145849	37388898	53	2878											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104139057	104139057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	104139057	A	G	104139057	3	3	44	1	0	0	0	0	1	0	0	0	6278	159	6	3	4638	3	GBF1	10	104139057	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	5993208	104139057	31395690	54	2879											
OR5M3	219482	broad.mit.edu	37	11	56237295	56237295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	56237295	G	A	56237295	3	1	44	1	0	0	0	0	1	0	0	0	11182	1087	38	1	246	1	OR5M3	11	56237295	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08		56237295	78769221	55	2880											
LRRC55	219527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56949791	56949792	+	Missense_Mutation	DNP	AA	AA	TC	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	TC	56949792	AA	TC	56949791	3	4	44	1	0	0	0	0	1	0	0	0	9018	130	5	5	426	5	LRRC55	11	56949791	Missense_Mutation	DNP	AA	TCGA-A4-8517-01A-11D-2396-08	712496	56949791	78056725	56	2881											
PGA3	643834	hgsc.bcm.edu	37	11	60975055	60975055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	60975055	A	G	60975055	3	3	44	1	0	0	0	0	1	0	0	0	11778	217	8	3	438	3	PGA3	11	60975055	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	4025264	60975055	74031461	57	2882											
ALDH3B1	221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67787234	67787234	+	Silent	SNP	A	A	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	67787234	A	T	67787234	2	4	44	1	0	0	0	0	0	0	0	1	499	407	15	5		5	ALDH3B1	11	67787234	Silent	SNP	A	TCGA-A4-8517-01A-11D-2396-08	6812179	67787234	67219282	58	2883											
RAB38	23682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	87908439	87908439	+	Silent	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	87908439	G	A	87908439	2	1	44	1	0	0	0	0	0	0	0	1	12941	1256	44	2		2	RAB38	11	87908439	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	20121205	87908439	47098077	59	2884											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117308640	117308640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	117308640	T	C	117308640	3	2	44	1	0	0	0	0	1	0	0	0	4771	1551	54	3	1794	3	DSCAML1	11	117308640	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	29400201	117308640	17697876	60	2885											
FOXJ2	55810	broad.mit.edu	37	12	8200558	8200560	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	8200560	CAG	-	8200558	7	5	44	1	0	1	0	1	0	0	0	0	6019	479	17	0	920	0	FOXJ2	12	8200558	In_Frame_Del	DEL	CAG	TCGA-A4-8517-01A-11D-2396-08		8200558	125651337	61	2886											
ARF3	377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49334777	49334777	+	Silent	SNP	T	T	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	49334777	T	C	49334777	2	2	44	1	0	0	0	0	0	0	0	1	845	1393	49	3		3	ARF3	12	49334777	Silent	SNP	T	TCGA-A4-8517-01A-11D-2396-08	41134219	49334777	84517118	62	2887											
KCNH3	23416	broad.mit.edu	37	12	49951572	49951572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	49951572	G	A	49951572	3	1	44	1	0	0	0	0	1	0	0	0	8040	1087	38	1	3146	1	KCNH3	12	49951572	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	616795	49951572	83900323	63	2888											
CHD8	57680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21870158	21870158	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	21870158	G	-	21870158	7	5	44	1	0	1	0	1	0	0	0	0	3333	1335	47	0	3801	0	CHD8	14	21870158	Frame_Shift_Del	DEL	G	TCGA-A4-8517-01A-11D-2396-08		21870158	85479382	64	2889											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64633956	64633956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	64633956	T	A	64633956	3	1	44	1	0	0	0	0	1	0	0	0	15458	1461	51	5	16969	5	SYNE2	14	64633956	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	42763798	64633956	42715584	65	2890											
FBLN5	10516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	92349359	92349359	+	Silent	SNP	G	G	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	92349359	G	T	92349359	2	4	44	1	0	0	0	0	0	0	0	1	5707	1306	46	4		4	FBLN5	14	92349359	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	27715403	92349359	15000181	66	2891											
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42462024	42462024	+	Silent	SNP	G	G	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	42462024	G	T	42462024	2	4	44	1	0	0	0	0	0	0	0	1	17221	1335	47	4		4	VPS39	15	42462024	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08		42462024	60069368	67	2892											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	76726602	76726603	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	TA	76726603	-	TA	76726602	7	5	44	1	0	1	1	0	0	0	0	0	13891	1841	64	0	1102	0	SCAPER	15	76726602	Frame_Shift_Ins	INS	-	TCGA-A4-8517-01A-11D-2396-08	34264578	76726602	25804790	68	2893											
AGPHD1	123688	hgsc.bcm.edu;broad.mit.edu	37	15	78807316	78807316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	78807316	G	A	78807316	3	1	44	1	0	0	0	0	1	0	0	0	393	1203	42	2	350	2	AGPHD1	15	78807316	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	2080714	78807316	23724076	69	2894											
POLG	5428	hgsc.bcm.edu;broad.mit.edu	37	15	89865055	89865055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	89865055	T	C	89865055	3	2	44	1	0	0	0	0	1	0	0	0	12207	1406	49	3	1241	3	POLG	15	89865055	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	11057739	89865055	12666337	70	2895											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	18856931	18856931	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	18856931	C	-	18856931	7	5	44	1	0	1	0	1	0	0	0	0	14808	825	29	0	5046	0	SMG1	16	18856931	Frame_Shift_Del	DEL	C	TCGA-A4-8517-01A-11D-2396-08		18856931	71497822	71	2896											
LOC100132247	0	broad.mit.edu	37	16	22545580	22545585	+	In_Frame_Del	DEL	AATCTC	AATCTC	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	AATCTC	AATCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	22545585	AATCTC	-	22545580	7	5	44	1	0	1	0	1	0	0	0	0	8875	362	13	0	1302	0	LOC100132247	16	22545580	In_Frame_Del	DEL	AATCTC	TCGA-A4-8517-01A-11D-2396-08	3688649	22545580	67809173	72	2897											
NOL3	8996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67208730	67208730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	67208730	G	A	67208730	3	1	44	1	0	0	0	0	1	0	0	0	10530	1175	41	2	508	2	NOL3	16	67208730	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	44663150	67208730	23146023	73	2898											
CDYL2	124359	hgsc.bcm.edu;broad.mit.edu	37	16	80654830	80654830	+	Silent	SNP	G	G	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	80654830	G	T	80654830	2	4	44	1	0	0	0	0	0	0	0	1	3188	1280	45	4		4	CDYL2	16	80654830	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	13446100	80654830	9699923	74	2899											
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84228709	84228709	+	Silent	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	84228709	G	A	84228709	2	1	44	1	0	0	0	0	0	0	0	1	232	1132	40	1		1	ADAD2	16	84228709	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	3573879	84228709	6126044	75	2900											
C17orf62	79415	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	80405459	80405459	+	Missense_Mutation	SNP	C	C	T	rs142773924		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	80405459	C	T	80405459	3	4	44	1	0	0	0	0	1	0	0	0	1872	661	23	1	459	1	C17orf62	17	80405459	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08		80405459	789751	76	2901											
NCLN	56926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	3192650	3192650	+	Missense_Mutation	SNP	G	G	A	rs200277850		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	3192650	G	A	3192650	3	1	44	1	0	0	0	0	1	0	0	0	10234	1145	40	1	373	1	NCLN	19	3192650	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08		3192650	55936333	77	2902											
PIP5K1C	23396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	3653310	3653310	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	-	3653310	T	-	3653310	7	5	44	1	0	1	0	1	0	0	0	0	11948	1609	56	0	1155	0	PIP5K1C	19	3653310	Frame_Shift_Del	DEL	T	TCGA-A4-8517-01A-11D-2396-08	460660	3653310	55475673	78	2903											
ZNF709	163051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12576137	12576137	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	12576137	T	G	12576137	3	3	44	1	0	0	0	0	1	0	0	0	18125	1783	62	5	1330	5	ZNF709	19	12576137	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	8922827	12576137	46552846	79	2904											
PKN1	5585	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14581037	14581037	+	Missense_Mutation	SNP	G	G	T	rs149980109	alternate_allele	TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	14581037	G	T	14581037	3	4	44	1	0	0	0	0	1	0	0	0	11986	1261	44	4	2473	4	PKN1	19	14581037	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	2004900	14581037	44547946	80	2905											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15303027	15303027	+	Silent	SNP	G	G	T	rs116044239	by1000genomes;alternate_allele	TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	15303027	G	T	15303027	2	4	44	1	0	0	0	0	0	0	0	1	10557	958	34	4		4	NOTCH3	19	15303027	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	721990	15303027	43825956	81	2906											
CLIP3	25999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36515358	36515358	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	36515358	A	C	36515358	3	2	44	1	0	0	0	0	1	0	0	0	3536	330	12	5	817	5	CLIP3	19	36515358	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	21212331	36515358	22613625	82	2907											
CHMP2A	27243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	59063432	59063433	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	59063433	-	T	59063432	7	5	44	1	0	1	1	0	0	0	0	0	3356	835	29	0	211	0	CHMP2A	19	59063432	Frame_Shift_Ins	INS	-	TCGA-A4-8517-01A-11D-2396-08	22548074	59063432	65551	83	2908											
PYGB	5834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25271238	25271238	+	Missense_Mutation	SNP	G	G	A	rs139162483		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	25271238	G	A	25271238	3	1	44	1	0	0	0	0	1	0	0	0	12873	1145	40	1	2011	1	PYGB	20	25271238	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08		25271238	37754282	84	2909											
KIF3B	9371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30897803	30897803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	30897803	G	A	30897803	3	1	44	1	0	0	0	0	1	0	0	0	8308	1291	45	2	225	2	KIF3B	20	30897803	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	5626565	30897803	32127717	85	2910											
SDC4	6385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43959164	43959164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	43959164	C	A	43959164	3	1	44	1	0	0	0	0	1	0	0	0	13967	623	22	4	317	4	SDC4	20	43959164	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	13061361	43959164	19066356	86	2911											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47628619	47628619	+	Silent	SNP	C	C	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	47628619	C	A	47628619	2	1	44	1	0	0	0	0	0	0	0	1	853	875	31	4		4	ARFGEF2	20	47628619	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	3669455	47628619	15396901	87	2912											
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	58569544	58569544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	58569544	G	C	58569544	3	2	44	1	0	0	0	0	1	0	0	0	3112	1246	43	4	1708	4	CDH26	20	58569544	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	10940925	58569544	4455976	88	2913											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22849618	22849618	+	Missense_Mutation	SNP	A	A	G	rs201923816		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	22849618	A	G	22849618	3	3	44	1	0	0	0	0	1	0	0	0	10210	363	13	3	1961	3	NCAM2	21	22849618	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08		22849618	25280277	89	2914											
MRPL40	64976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19423455	19423455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	19423455	G	T	19423455	3	4	44	1	0	0	0	0	1	0	0	0	9811	991	35	4	605	4	MRPL40	22	19423455	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08		19423455	31881111	90	2915											
KLHL22	84861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	20796432	20796432	+	Silent	SNP	G	G	C	rs149300605	alternate_allele	TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	C	20796432	G	C	20796432	2	2	44	1	0	0	0	0	0	0	0	1	8384	1103	39	4		4	KLHL22	22	20796432	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	1372977	20796432	30508134	91	2916											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46765598	46765598	+	Silent	SNP	A	A	G	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	G	46765598	A	G	46765598	2	3	44	1	0	0	0	0	0	0	0	1	3223	175	7	3		3	CELSR1	22	46765598	Silent	SNP	A	TCGA-A4-8517-01A-11D-2396-08	25969166	46765598	4538968	92	2917											
MIOX	55586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50926723	50926723	+	Silent	SNP	G	G	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	50926723	G	T	50926723	2	4	44	1	0	0	0	0	0	0	0	1	9597	1190	42	4		4	MIOX	22	50926723	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	4161125	50926723	377843	93	2918											
NXT2	55916	hgsc.bcm.edu;broad.mit.edu	37	X	108780250	108780250	+	Silent	SNP	G	G	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	108780250	G	A	108780250	2	1	44	1	0	0	0	0	0	0	0	1	10802	1362	47	2		2	NXT2	23	108780250	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08		108780250	46490310	94	2919											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122755201	122755201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	A	122755201	T	A	122755201	3	1	44	1	0	0	0	0	1	0	0	0	15877	1490	52	5	790	5	THOC2	23	122755201	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	13974951	122755201	32515359	95	2920											
RBMX	27316	hgsc.bcm.edu	37	X	135960073	135960073	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	T	135960073	C	T	135960073	5	4	44	1	0	0	0	0	0	0	1	0	13164	521	18	2	865	2	RBMX	23	135960073	Splice_Site	SNP	C	TCGA-A4-8517-01A-11D-2396-08	13204872	135960073	19310487	96	2921											
ARHGEF10L	55160	hgsc.bcm.edu	37	1	18023490	18023490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	18023490	C	G	18023490	3	3	45	1	0	0	0	0	1	0	0	0	895	710	25	4	3565	4	ARHGEF10L	1	18023490	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		18023490	231227131	1	2922											
IL22RA1	58985	bcgsc.ca	37	1	24447843	24447843	+	Missense_Mutation	SNP	G	G	T	rs75716137		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	24447843	G	T	24447843	3	4	45	1	0	0	0	0	1	0	0	0	7680	1299	45	4	551	4	IL22RA1	1	24447843	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	6424353	24447843	224802778	2	2923											
PPCS	79717	bcgsc.ca	37	1	42922310	42922310	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	42922310	G	C	42922310	3	2	45	1	0	0	0	0	1	0	0	0	12312	1087	38	4	76	4	PPCS	1	42922310	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	18474467	42922310	206328311	3	2924											
PTPRF	5792	bcgsc.ca	37	1	44070598	44070598	+	Missense_Mutation	SNP	C	C	T	rs147874335		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	44070598	C	T	44070598	3	4	45	1	0	0	0	0	1	0	0	0	12814	768	27	1	3120	1	PTPRF	1	44070598	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	1148288	44070598	205180023	4	2925											
KIAA1324	57535	bcgsc.ca	37	1	109735398	109735398	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	109735398	A	C	109735398	3	2	45	1	0	0	0	0	1	0	0	0	8230	43	2	5	1903	5	KIAA1324	1	109735398	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	65664800	109735398	139515223	5	2926											
KCNC4	3749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110774916	110774916	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	110774916	G	A	110774916	2	1	45	1	0	0	0	0	0	0	0	1	8024	1364	48	2		2	KCNC4	1	110774916	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	1039518	110774916	138475705	6	2927											
DENND2D	79961	hgsc.bcm.edu	37	1	111739853	111739853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	111739853	A	G	111739853	3	3	45	1	0	0	0	0	1	0	0	0	4433	72	3	3	998	3	DENND2D	1	111739853	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	964937	111739853	137510768	7	2928											
VANGL1	81839	bcgsc.ca	37	1	116226631	116226631	+	Nonsense_Mutation	SNP	C	C	A	rs74117015		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	116226631	C	A	116226631	4	1	45	1	0	0	0	0	0	1	0	0	17131	838	29	4	1031	4	VANGL1	1	116226631	Nonsense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	4486778	116226631	133023990	8	2929											
NBPF14	25832	hgsc.bcm.edu	37	1	148015634	148015634	+	Missense_Mutation	SNP	T	T	C	rs200156420		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	148015634	T	C	148015634	3	2	45	1	0	0	0	0	1	0	0	0	10201	1754	61	3	1828	3	NBPF14	1	148015634	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	31789003	148015634	101234987	9	2930											
ZNF687	57592	bcgsc.ca	37	1	151263397	151263397	+	Missense_Mutation	SNP	G	G	T	rs77014701		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	151263397	G	T	151263397	3	4	45	1	0	0	0	0	1	0	0	0	18104	1368	48	4	3456	4	ZNF687	1	151263397	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	3247763	151263397	97987224	10	2931											
LINGO4	339398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151774638	151774638	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	151774638	C	G	151774638	3	3	45	1	0	0	0	0	1	0	0	0	8824	564	20	4	1242	4	LINGO4	1	151774638	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	511241	151774638	97475983	11	2932											
CACNA1S	779	bcgsc.ca	37	1	201017805	201017805	+	Missense_Mutation	SNP	A	A	C	rs79011683		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	201017805	A	C	201017805	3	2	45	1	0	0	0	0	1	0	0	0	2549	159	6	5	1311	5	CACNA1S	1	201017805	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	49243167	201017805	48232816	12	2933											
OBSCN	84033	bcgsc.ca	37	1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	228430947	C	G	228430947	3	3	45	1	0	0	0	0	1	0	0	0	10819	739	26	4	3027	4	OBSCN	1	228430947	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	27413142	228430947	20819674	13	2934											
OBSCN	84033	bcgsc.ca	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	228434292	C	G	228434292	3	3	45	1	0	0	0	0	1	0	0	0	10819	739	26	4	3867	4	OBSCN	1	228434292	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	3345	228434292	20816329	14	2935											
OBSCN	84033	bcgsc.ca	37	1	228487735	228487735	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	228487735	C	G	228487735	3	3	45	1	0	0	0	0	1	0	0	0	10819	725	25	4		4	OBSCN	1	228487735	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	53443	228487735	20762886	15	2936											
ABCB10	23456	hgsc.bcm.edu	37	1	229685147	229685147	+	Missense_Mutation	SNP	G	G	C	rs138482043	byfrequency;alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	229685147	G	C	229685147	3	2	45	1	0	0	0	0	1	0	0	0	41	932	33	4	1712	4	ABCB10	1	229685147	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	1197412	229685147	19565474	16	2937											
EXO1	9156	bcgsc.ca	37	1	242020734	242020734	+	Missense_Mutation	SNP	C	C	A	rs78172944		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	242020734	C	A	242020734	3	1	45	1	0	0	0	0	1	0	0	0	5302	711	25	4	507	4	EXO1	1	242020734	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	12335587	242020734	7229887	17	2938											
PLB1	151056	hgsc.bcm.edu	37	2	28772929	28772929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	28772929	A	G	28772929	3	3	45	1	0	0	0	0	1	0	0	0	12031	188	7	3	1156	3	PLB1	2	28772929	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		28772929	214426444	18	2939											
GALM	130589	bcgsc.ca	37	2	38908566	38908566	+	Missense_Mutation	SNP	C	C	A	rs74917735		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	38908566	C	A	38908566	3	1	45	1	0	0	0	0	1	0	0	0	6212	479	17	4	500	4	GALM	2	38908566	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	10135637	38908566	204290807	19	2940											
ABCG5	64240	hgsc.bcm.edu	37	2	44049984	44049984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	44049984	A	G	44049984	3	3	45	1	0	0	0	0	1	0	0	0	71	304	11	3	556	3	ABCG5	2	44049984	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	5141418	44049984	199149389	20	2941											
SLC16A14	151473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	230910735	230910735	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	230910735	G	A	230910735	2	1	45	1	0	0	0	0	0	0	0	1	14420	1164	41	2		2	SLC16A14	2	230910735	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	186860751	230910735	12288638	21	2942											
AGAP1	116987	hgsc.bcm.edu	37	2	236839507	236839507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	236839507	G	A	236839507	3	1	45	1	0	0	0	0	1	0	0	0	366	1029	36	2	1469	2	AGAP1	2	236839507	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	5928772	236839507	6359866	22	2943											
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu	37	3	19389246	19389246	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	19389246	G	A	19389246	2	1	45	1	0	0	0	0	0	0	0	1	8045	1103	39	1		1	KCNH8	3	19389246	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08		19389246	178633184	23	2944											
USP19	10869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	49148785	49148785	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	-	49148785	C	-	49148785	7	5	45	1	0	1	0	1	0	0	0	0	17062	494	18	0	1058	0	USP19	3	49148785	Frame_Shift_Del	DEL	C	TCGA-A4-8518-01A-11D-2396-08	29759539	49148785	148873645	24	2945											
KIAA2018	205717	hgsc.bcm.edu	37	3	113376113	113376113	+	Silent	SNP	C	C	T	rs62265537		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	113376113	C	T	113376113	2	4	45	1	0	0	0	0	0	0	0	1	8275	796	28	2		2	KIAA2018	3	113376113	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	64227328	113376113	84646317	25	2946											
AP2M1	1173	bcgsc.ca	37	3	183898702	183898702	+	Silent	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	183898702	T	G	183898702	2	3	45	1	0	0	0	0	0	0	0	1	742	1638	57	5		5	AP2M1	3	183898702	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	70522589	183898702	14123728	26	2947											
KIAA0226	9711	bcgsc.ca	37	3	197410204	197410204	+	Missense_Mutation	SNP	C	C	A	rs80094312		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	197410204	C	A	197410204	3	1	45	1	0	0	0	0	1	0	0	0	8169	478	17	4	996	4	KIAA0226	3	197410204	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	13511502	197410204	612226	27	2948											
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	197687183	197687183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	197687183	T	A	197687183	3	1	45	1	0	0	0	0	1	0	0	0	8854	1580	55	5	93	5	LMLN	3	197687183	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	276979	197687183	335247	28	2949											
ANAPC4	29945	bcgsc.ca	37	4	25398292	25398292	+	Silent	SNP	G	G	C	rs34015658	byfrequency;alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	25398292	G	C	25398292	2	2	45	1	0	0	0	0	0	0	0	1	604	1103	39	4		4	ANAPC4	4	25398292	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08		25398292	165755984	29	2950											
SLC10A7	84068	hgsc.bcm.edu	37	4	147363940	147363940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	147363940	A	G	147363940	3	3	45	1	0	0	0	0	1	0	0	0	14392	14	1	3	669	3	SLC10A7	4	147363940	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	121965648	147363940	43790336	30	2951											
CMYA5	202333	bcgsc.ca	37	5	79029464	79029464	+	Missense_Mutation	SNP	G	G	A	rs74757618		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	79029464	G	A	79029464	3	1	45	1	0	0	0	0	1	0	0	0	3592	942	33	2	4882	2	CMYA5	5	79029464	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08		79029464	101885796	31	2952	34	2									
CMYA5	202333	bcgsc.ca	37	5	79029466	79029466	+	Missense_Mutation	SNP	C	C	A	rs79207557		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	79029466	C	A	79029466	3	1	45	1	0	0	0	0	1	0	0	0	3592	477	17	4	4884	4	CMYA5	5	79029466	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	2	79029466	101885794	32	2953	34	2									
BRD8	10902	bcgsc.ca	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	137503737	C	A	137503737	3	1	45	1	0	0	0	0	1	0	0	0	1508	594	21	4	3174	4	BRD8	5	137503737	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	58474271	137503737	43411523	33	2954											
NRG2	9542	hgsc.bcm.edu	37	5	139422525	139422525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	139422525	C	T	139422525	3	4	45	1	0	0	0	0	1	0	0	0	10655	652	23	1	2553	1	NRG2	5	139422525	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	1918788	139422525	41492735	34	2955											
FAT2	2196	bcgsc.ca	37	5	150948147	150948147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	150948147	T	G	150948147	3	3	45	1	0	0	0	0	1	0	0	0	5697	1696	59	5	12795	5	FAT2	5	150948147	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	11525622	150948147	29967113	35	2956											
C6orf222	389384	bcgsc.ca	37	6	36294451	36294451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	36294451	G	T	36294451	3	4	45	1	0	0	0	0	1	0	0	0	2358	1377	48	4	1118	4	C6orf222	6	36294451	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08		36294451	134820616	36	2957											
PIM1	5292	bcgsc.ca	37	6	37139029	37139029	+	Silent	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	37139029	C	G	37139029	2	3	45	1	0	0	0	0	0	0	0	1	11934	639	23	4		4	PIM1	6	37139029	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	844578	37139029	133976038	37	2958											
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39161945	39161945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	39161945	C	T	39161945	3	4	45	1	0	0	0	0	1	0	0	0	8076	666	23	1	873	1	KCNK5	6	39161945	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	2022916	39161945	131953122	38	2959											
YIPF3	25844	hgsc.bcm.edu	37	6	43481182	43481182	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	43481182	G	C	43481182	3	2	45	1	0	0	0	0	1	0	0	0	17491	1319	46	4	623	4	YIPF3	6	43481182	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	4319237	43481182	127633885	39	2960											
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46658247	46658247	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	46658247	C	G	46658247	3	3	45	1	0	0	0	0	1	0	0	0	15746	477	17	4	2384	4	TDRD6	6	46658247	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	3177065	46658247	124456820	40	2961											
ULBP1	80329	bcgsc.ca	37	6	150290454	150290454	+	Nonsense_Mutation	SNP	G	G	T	rs75999880		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	150290454	G	T	150290454	4	4	45	1	0	0	0	0	0	1	0	0	16984	1291	45	4	593	4	ULBP1	6	150290454	Nonsense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	103632207	150290454	20824613	41	2962											
FBXO24	26261	bcgsc.ca	37	7	100192051	100192051	+	Missense_Mutation	SNP	A	A	C	rs200752657		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	100192051	A	C	100192051	3	2	45	1	0	0	0	0	1	0	0	0	5742	275	10	5	1018	5	FBXO24	7	100192051	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		100192051	58946612	42	2963											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	68995502	68995502	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	68995502	A	T	68995502	3	4	45	1	0	0	0	0	1	0	0	0	12487	333	12	5	1976	5	PREX2	8	68995502	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		68995502	77368520	43	2964											
ASPN	54829	hgsc.bcm.edu	37	9	95237063	95237063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	95237063	A	T	95237063	3	4	45	1	0	0	0	0	1	0	0	0	1057	214	8	5	1053	5	ASPN	9	95237063	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		95237063	45976368	44	2965											
FAM120A	23196	bcgsc.ca	37	9	96326681	96326681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	96326681	G	C	96326681	3	2	45	1	0	0	0	0	1	0	0	0	5419	1223	43	4	3286	4	FAM120A	9	96326681	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	1089618	96326681	44886750	45	2966											
SLC25A25	114789	bcgsc.ca	37	9	130854243	130854243	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	130854243	A	C	130854243	3	2	45	1	0	0	0	0	1	0	0	0	14501	159	6	5	361	5	SLC25A25	9	130854243	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	34527562	130854243	10359188	46	2967											
ZER1	10444	hgsc.bcm.edu	37	9	131515582	131515582	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	131515582	C	G	131515582	3	3	45	1	0	0	0	0	1	0	0	0	17637	710	25	4	1745	4	ZER1	9	131515582	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	661339	131515582	9697849	47	2968											
PDE6C	5146	hgsc.bcm.edu	37	10	95396764	95396764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	95396764	A	G	95396764	3	3	45	1	0	0	0	0	1	0	0	0	11654	247	9	3	1468	3	PDE6C	10	95396764	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		95396764	40137983	48	2969											
DNMBP	23268	bcgsc.ca	37	10	101646368	101646368	+	Missense_Mutation	SNP	C	C	A	rs201493282		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	101646368	C	A	101646368	3	1	45	1	0	0	0	0	1	0	0	0	4676	478	17	4	1446	4	DNMBP	10	101646368	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	6249604	101646368	33888379	49	2970											
MUC5B	727897	hgsc.bcm.edu	37	11	1258389	1258389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	1258389	T	G	1258389	3	3	45	1	0	0	0	0	1	0	0	0	9986	1551	54	5	3399	5	MUC5B	11	1258389	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08		1258389	133748127	50	2971											
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10626061	10626061	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	10626061	C	G	10626061	3	3	45	1	0	0	0	0	1	0	0	0	9860	913	32	4	1140	4	MRVI1	11	10626061	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	9367672	10626061	124380455	51	2972											
USH1C	10083	bcgsc.ca	37	11	17542427	17542427	+	Silent	SNP	G	G	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	17542427	G	T	17542427	2	4	45	1	0	0	0	0	0	0	0	1	17046	1306	46	4		4	USH1C	11	17542427	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	6916366	17542427	117464089	52	2973	35	2									
USH1C	10083	bcgsc.ca	37	11	17542436	17542436	+	Silent	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	17542436	T	G	17542436	2	3	45	1	0	0	0	0	0	0	0	1	17046	1625	57	5		5	USH1C	11	17542436	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	9	17542436	117464080	53	2974	35	2									
MAML2	84441	hgsc.bcm.edu	37	11	95825431	95825431	+	Silent	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	95825431	T	C	95825431	2	2	45	1	0	0	0	0	0	0	0	1	9213	1722	60	3		3	MAML2	11	95825431	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	78282995	95825431	39181085	54	2975											
PPHLN1	51535	hgsc.bcm.edu	37	12	42840394	42840394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	42840394	G	C	42840394	3	2	45	1	0	0	0	0	1	0	0	0	12322	1188	41	4	1607	4	PPHLN1	12	42840394	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08		42840394	91011501	55	2976											
KRT1	3848	bcgsc.ca	37	12	53069392	53069392	+	Missense_Mutation	SNP	G	G	T	rs75007002		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	53069392	G	T	53069392	3	4	45	1	0	0	0	0	1	0	0	0	8454	1377	48	4	418	4	KRT1	12	53069392	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	10228998	53069392	80782503	56	2977											
ANAPC7	51434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110813921	110813921	+	Silent	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	110813921	T	C	110813921	2	2	45	1	0	0	0	0	0	0	0	1	606	1509	53	3		3	ANAPC7	12	110813921	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	57744529	110813921	23037974	57	2978											
BRAP	8315	bcgsc.ca	37	12	112098449	112098449	+	Silent	SNP	G	G	C	rs201734278		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	112098449	G	C	112098449	2	2	45	1	0	0	0	0	0	0	0	1	1499	1103	39	4		4	BRAP	12	112098449	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	1284528	112098449	21753446	58	2979											
DNAH10	196385	hgsc.bcm.edu	37	12	124414245	124414245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	124414245	A	G	124414245	3	3	45	1	0	0	0	0	1	0	0	0	4600	14	1	3	12479	3	DNAH10	12	124414245	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	12315796	124414245	9437650	59	2980											
SHISA2	387914	hgsc.bcm.edu	37	13	26625047	26625047	+	Silent	SNP	G	G	A	rs4770911		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	26625047	G	A	26625047	2	1	45	1	0	0	0	0	0	0	0	1	14293	962	34	2		2	SHISA2	13	26625047	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08		26625047	88544831	60	2981											
MYO16	23026	hgsc.bcm.edu	37	13	109792825	109792825	+	Missense_Mutation	SNP	C	C	T	rs199777754		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	109792825	C	T	109792825	3	4	45	1	0	0	0	0	1	0	0	0	10071	768	27	1	4321	1	MYO16	13	109792825	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	83167778	109792825	5377053	61	2982											
SQRDL	58472	bcgsc.ca	37	15	45968443	45968443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	45968443	C	G	45968443	3	3	45	1	0	0	0	0	1	0	0	0	15141	644	23	4	817	4	SQRDL	15	45968443	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		45968443	56562949	62	2983											
DMXL2	23312	bcgsc.ca	37	15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	51766637	C	A	51766637	3	1	45	1	0	0	0	0	1	0	0	0	4597	710	25	4	2060	4	DMXL2	15	51766637	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	5798194	51766637	50764755	63	2984											
CCNB2	9133	bcgsc.ca	37	15	59406999	59406999	+	Missense_Mutation	SNP	T	T	G	rs200615810		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	59406999	T	G	59406999	3	3	45	1	0	0	0	0	1	0	0	0	2915	1638	57	5	539	5	CCNB2	15	59406999	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	7640362	59406999	43124393	64	2985											
TRIP4	9325	hgsc.bcm.edu	37	15	64692969	64692969	+	Silent	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	64692969	T	C	64692969	2	2	45	1	0	0	0	0	0	0	0	1	16570	1838	64	3		3	TRIP4	15	64692969	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	5285970	64692969	37838423	65	2986											
AKAP13	11214	bcgsc.ca	37	15	86287035	86287035	+	Missense_Mutation	SNP	A	A	C	rs79101360		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	86287035	A	C	86287035	3	2	45	1	0	0	0	0	1	0	0	0	449	43	2	5	8579	5	AKAP13	15	86287035	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	21594066	86287035	16244357	66	2987											
PKD1	5310	hgsc.bcm.edu	37	16	2164808	2164808	+	Missense_Mutation	SNP	C	C	T	rs55931801		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	2164808	C	T	2164808	3	4	45	1	0	0	0	0	1	0	0	0	11970	652	23	1	10839	1	PKD1	16	2164808	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		2164808	88189945	67	2988											
MYLK3	91807	bcgsc.ca	37	16	46744687	46744687	+	Missense_Mutation	SNP	G	G	A	rs200890698		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	46744687	G	A	46744687	3	1	45	1	0	0	0	0	1	0	0	0	10065	1174	41	2	342	2	MYLK3	16	46744687	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	44579879	46744687	43610066	68	2989											
FLII	2314	hgsc.bcm.edu	37	17	18154306	18154306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	18154306	A	G	18154306	3	3	45	1	0	0	0	0	1	0	0	0	5932	304	11	3	2255	3	FLII	17	18154306	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		18154306	63040904	69	2990											
ITGB3	3690	hgsc.bcm.edu	37	17	45361999	45361999	+	Missense_Mutation	SNP	C	C	A	rs202100960		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	45361999	C	A	45361999	3	1	45	1	0	0	0	0	1	0	0	0	7902	477	17	4	566	4	ITGB3	17	45361999	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	27207693	45361999	35833211	70	2991											
SPATA20	64847	bcgsc.ca	37	17	48628511	48628511	+	Silent	SNP	C	C	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	48628511	C	A	48628511	2	1	45	1	0	0	0	0	0	0	0	1	15018	581	21	4		4	SPATA20	17	48628511	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	3266512	48628511	32566699	71	2992											
HELZ	9931	hgsc.bcm.edu	37	17	65212033	65212033	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	65212033	C	G	65212033	3	3	45	1	0	0	0	0	1	0	0	0	7056	826	29	4	5715	4	HELZ	17	65212033	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	16583522	65212033	15983177	72	2993											
FADS6	283985	hgsc.bcm.edu	37	17	72878831	72878831	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	72878831	C	G	72878831	3	3	45	1	0	0	0	0	1	0	0	0	5372	797	28	4	701	4	FADS6	17	72878831	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	7666798	72878831	8316379	73	2994											
FOXK2	3607	hgsc.bcm.edu	37	17	80559303	80559303	+	Silent	SNP	C	C	A	rs201366286	alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	80559303	C	A	80559303	2	1	45	1	0	0	0	0	0	0	0	1	6022	755	27	4		4	FOXK2	17	80559303	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	7680472	80559303	635907	74	2995											
POTEC	388468	bcgsc.ca	37	18	14533088	14533088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	14533088	C	T	14533088	3	4	45	1	0	0	0	0	1	0	0	0	12269	922	32	2	629	2	POTEC	18	14533088	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		14533088	63544160	75	2996											
SBNO2	22904	hgsc.bcm.edu	37	19	1122146	1122146	+	Missense_Mutation	SNP	C	C	G	rs192343149		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	1122146	C	G	1122146	3	3	45	1	0	0	0	0	1	0	0	0	13876	893	31	4	3047	4	SBNO2	19	1122146	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		1122146	58006837	76	2997											
DOT1L	84444	hgsc.bcm.edu	37	19	2193778	2193778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	2193778	C	T	2193778	3	4	45	1	0	0	0	0	1	0	0	0	4711	768	27	1	606	1	DOT1L	19	2193778	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	1071632	2193778	56935205	77	2998											
PTPRS	5802	hgsc.bcm.edu	37	19	5220167	5220167	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	5220167	T	A	5220167	5	1	45	1	0	0	0	0	0	0	1	0	12824	1594	55	5	2366	5	PTPRS	19	5220167	Splice_Site	SNP	T	TCGA-A4-8518-01A-11D-2396-08	3026389	5220167	53908816	78	2999											
DNMT1	1786	bcgsc.ca	37	19	10270719	10270719	+	Missense_Mutation	SNP	C	C	G	rs201945078		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	10270719	C	G	10270719	3	3	45	1	0	0	0	0	1	0	0	0	4677	768	27	4	3942	4	DNMT1	19	10270719	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	5050552	10270719	48858264	79	3000											
CDC37	11140	bcgsc.ca	37	19	10506724	10506724	+	Silent	SNP	G	G	C	rs140896014	byfrequency;alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	10506724	G	C	10506724	2	2	45	1	0	0	0	0	0	0	0	1	3070	1103	39	4		4	CDC37	19	10506724	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	236005	10506724	48622259	80	3001											
C19orf44	84167	bcgsc.ca	37	19	16614154	16614154	+	Missense_Mutation	SNP	C	C	G	rs202132782		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	16614154	C	G	16614154	3	3	45	1	0	0	0	0	1	0	0	0	1929	535	19	4	1044	4	C19orf44	19	16614154	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	6107430	16614154	42514829	81	3002											
GDF15	9518	bcgsc.ca	37	19	18499106	18499106	+	Silent	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	18499106	A	G	18499106	2	3	45	1	0	0	0	0	0	0	0	1	6320	320	12	3		3	GDF15	19	18499106	Silent	SNP	A	TCGA-A4-8518-01A-11D-2396-08	1884952	18499106	40629877	82	3003											
PHLDB3	653583	hgsc.bcm.edu	37	19	43991217	43991217	+	Missense_Mutation	SNP	C	C	T	rs138387298		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	43991217	C	T	43991217	3	4	45	1	0	0	0	0	1	0	0	0	11860	797	28	2	742	2	PHLDB3	19	43991217	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	25492111	43991217	15137766	83	3004											
PVRL2	5819	bcgsc.ca	37	19	45381871	45381871	+	Silent	SNP	T	T	C	rs199691943		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	45381871	T	C	45381871	2	2	45	1	0	0	0	0	0	0	0	1	12853	1471	51	3		3	PVRL2	19	45381871	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	1390654	45381871	13747112	84	3005											
AP2A1	160	broad.mit.edu	37	19	50305818	50305818	+	Silent	SNP	C	C	T	rs200480269		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	50305818	C	T	50305818	2	4	45	1	0	0	0	0	0	0	0	1	739	738	26	2		2	AP2A1	19	50305818	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	4923947	50305818	8823165	85	3006											
PTPRT	11122	bcgsc.ca	37	20	40710579	40710579	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	40710579	G	A	40710579	2	1	45	1	0	0	0	0	0	0	0	1	12825	1136	40	1		1	PTPRT	20	40710579	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08		40710579	22314941	86	3007											
KCNE2	9992	hgsc.bcm.edu	37	21	35743147	35743147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	35743147	T	C	35743147	3	2	45	1	0	0	0	0	1	0	0	0	8030	1593	55	3	372	3	KCNE2	21	35743147	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08		35743147	12386748	87	3008											
BAIAP2L2	80115	ucsc.edu	37	22	38483204	38483204	+	Missense_Mutation	SNP	C	C	T	rs201090429		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	T	38483204	C	T	38483204	3	4	45	1	0	0	0	0	1	0	0	0	1303	536	19	1	419	1	BAIAP2L2	22	38483204	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		38483204	12821362	88	3009											
PCDH19	57526	hgsc.bcm.edu	37	X	99661616	99661616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	C	99661616	G	C	99661616	3	2	45	1	0	0	0	0	1	0	0	0	11521	932	33	4	1490	4	PCDH19	23	99661616	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08		99661616	55608944	89	3010											
KCNE1L	23630	bcgsc.ca	37	X	108868162	108868163	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	AA	108868163	CC	AA	108868162	3	1	45	1	0	0	0	0	1	0	0	0	8029	623	22	4	344	4	KCNE1L	23	108868162	Missense_Mutation	DNP	CC	TCGA-A4-8518-01A-11D-2396-08	9206546	108868162	46402398	90	3011											
PRRG3	79057	hgsc.bcm.edu	37	X	150869296	150869296	+	Silent	SNP	C	C	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	A	150869296	C	A	150869296	2	1	45	1	0	0	0	0	0	0	0	1	12617	875	31	4		4	PRRG3	23	150869296	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	42001134	150869296	4401264	91	3012											
FATE1	89885	bcgsc.ca	37	X	150891105	150891105	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	G	150891105	T	G	150891105	4	3	45	1	0	0	0	0	0	1	0	0	5700	1471	51	5	444	5	FATE1	23	150891105	Nonsense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	21809	150891105	4379455	92	3013											
SSU72	29101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1480325	1480325	+	Silent	SNP	C	C	T	rs138912153	alternate_allele	TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	1480325	C	T	1480325	2	4	46	1	0	0	0	0	0	0	0	1	15214	726	26	2		2	SSU72	1	1480325	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08		1480325	247770296	1	3014											
TMEM52	339456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1849335	1849335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	1849335	G	T	1849335	3	4	46	1	0	0	0	0	1	0	0	0	16190	1232	43	4	17	4	TMEM52	1	1849335	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	369010	1849335	247401286	2	3015											
CELA3B	23436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22310247	22310247	+	Silent	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	22310247	C	T	22310247	2	4	46	1	0	0	0	0	0	0	0	1	3216	871	31	1		1	CELA3B	1	22310247	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08	20460912	22310247	226940374	3	3016											
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	23759922	23759922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	23759922	T	A	23759922	3	1	46	1	0	0	0	0	1	0	0	0	1012	1551	54	5	608	5	ASAP3	1	23759922	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	1449675	23759922	225490699	4	3017											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33985175	33985175	+	Silent	SNP	T	T	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	33985175	T	A	33985175	2	1	46	1	0	0	0	0	0	0	0	1	3947	1567	55	5		5	CSMD2	1	33985175	Silent	SNP	T	TCGA-A4-8630-01A-11D-2396-08	10225253	33985175	215265446	5	3018											
YBX1	4904	hgsc.bcm.edu	37	1	43166452	43166452	+	Silent	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	43166452	G	A	43166452	2	1	46	1	0	0	0	0	0	0	0	1	17481	1246	43	2		2	YBX1	1	43166452	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	9181277	43166452	206084169	6	3019											
IGSF3	3321	hgsc.bcm.edu	37	1	117122273	117122273	+	Silent	SNP	G	G	A	rs114783166		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	117122273	G	A	117122273	2	1	46	1	0	0	0	0	0	0	0	1	7608	1136	40	1		1	IGSF3	1	117122273	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	73955821	117122273	132128348	7	3020											
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117618867	117618867	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	117618867	C	G	117618867	3	3	46	1	0	0	0	0	1	0	0	0	16731	845	30	4	1363	4	TTF2	1	117618867	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	496594	117618867	131631754	8	3021											
S100A3	6274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153520171	153520171	+	Missense_Mutation	SNP	G	G	C	rs199928185		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	153520171	G	C	153520171	3	2	46	1	0	0	0	0	1	0	0	0	13792	1232	43	4	16	4	S100A3	1	153520171	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	35901304	153520171	95730450	9	3022											
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156221203	156221203	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	-	156221203	G	-	156221203	7	5	46	1	0	1	0	1	0	0	0	0	14809	1319	46	0	243	0	SMG5	1	156221203	Frame_Shift_Del	DEL	G	TCGA-A4-8630-01A-11D-2396-08	2701032	156221203	93029418	10	3023											
TRIM11	81559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228584695	228584695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	228584695	G	T	228584695	3	4	46	1	0	0	0	0	1	0	0	0	16499	1261	44	4	602	4	TRIM11	1	228584695	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	72363492	228584695	20665926	11	3024											
AGBL5	60509	hgsc.bcm.edu	37	2	27291528	27291528	+	Silent	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	27291528	A	G	27291528	2	3	46	1	0	0	0	0	0	0	0	1	378	291	11	3		3	AGBL5	2	27291528	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08		27291528	215907845	12	3025											
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	40405590	40405590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	40405590	T	C	40405590	3	2	46	1	0	0	0	0	1	0	0	0	14719	1792	62	3	1213	3	SLC8A1	2	40405590	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	13114062	40405590	202793783	13	3026											
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48049436	48049436	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	48049436	A	C	48049436	3	2	46	1	0	0	0	0	1	0	0	0	5734	98	4	5	1294	5	FBXO11	2	48049436	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08	7643846	48049436	195149937	14	3027											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179429832	179429834	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	-	179429834	AAT	-	179429832	7	5	46	1	0	1	0	1	0	0	0	0	16747	126	5	0	27100	0	TTN	2	179429832	In_Frame_Del	DEL	AAT	TCGA-A4-8630-01A-11D-2396-08	131380396	179429832	63769541	15	3028											
CTLA4	1493	hgsc.bcm.edu	37	2	204735645	204735645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	204735645	T	C	204735645	3	2	46	1	0	0	0	0	1	0	0	0	4013	1493	52	3	452	3	CTLA4	2	204735645	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	25305813	204735645	38463728	16	3029											
VGLL4	9686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	11600049	11600049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	11600049	G	A	11600049	3	1	46	1	0	0	0	0	1	0	0	0	17173	1174	41	2	22	2	VGLL4	3	11600049	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08		11600049	186422381	17	3030											
B4GALT4	8702	bcgsc.ca	37	3	118945881	118945881	+	Silent	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	118945881	C	T	118945881	2	4	46	1	0	0	0	0	0	0	0	1	1273	912	32	2		2	B4GALT4	3	118945881	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08	107345832	118945881	79076549	18	3031											
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124487860	124487860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	124487860	C	T	124487860	3	4	46	1	0	0	0	0	1	0	0	0	7905	666	23	1	398	1	ITGB5	3	124487860	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	5541979	124487860	73534570	19	3032											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1807787	1807787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	1807787	A	G	1807787	3	3	46	1	0	0	0	0	1	0	0	0	5874	179	7	3	2051	3	FGFR3	4	1807787	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08		1807787	189346489	20	3033											
SLAIN2	57606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48384849	48384849	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	48384849	T	A	48384849	3	1	46	1	0	0	0	0	1	0	0	0	14379	1696	59	5	1145	5	SLAIN2	4	48384849	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	46577062	48384849	142769427	21	3034											
MANBA	4126	hgsc.bcm.edu	37	4	103590185	103590185	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	103590185	C	G	103590185	3	3	46	1	0	0	0	0	1	0	0	0	9226	710	25	4	1419	4	MANBA	4	103590185	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	55205336	103590185	87564091	22	3035											
TBCK	93627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	106967781	106967781	+	Silent	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	106967781	G	A	106967781	2	1	46	1	0	0	0	0	0	0	0	1	15648	1306	46	2		2	TBCK	4	106967781	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	3377596	106967781	84186495	23	3036											
LARP7	51574	hgsc.bcm.edu	37	4	113578403	113578403	+	Silent	SNP	T	T	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	113578403	T	C	113578403	2	2	46	1	0	0	0	0	0	0	0	1	8640	1739	60	3		3	LARP7	4	113578403	Silent	SNP	T	TCGA-A4-8630-01A-11D-2396-08	6610622	113578403	77575873	24	3037											
FRG1	2483	hgsc.bcm.edu;broad.mit.edu	37	4	190874221	190874221	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	190874221	A	G	190874221	5	3	46	1	0	0	0	0	0	0	1	0	6053	434	15	3	272	3	FRG1	4	190874221	Splice_Site	SNP	A	TCGA-A4-8630-01A-11D-2396-08	77295818	190874221	280055	25	3038											
SLC6A19	340024	hgsc.bcm.edu	37	5	1210657	1210657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	1210657	C	A	1210657	3	1	46	1	0	0	0	0	1	0	0	0	14695	912	32	4	452	4	SLC6A19	5	1210657	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		1210657	179704603	26	3039											
JMY	133746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	78610483	78610483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	78610483	C	T	78610483	3	4	46	1	0	0	0	0	1	0	0	0	7964	594	21	2	2502	2	JMY	5	78610483	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	77399826	78610483	102304777	27	3040											
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	129241299	129241299	+	Silent	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	129241299	C	T	129241299	2	4	46	1	0	0	0	0	0	0	0	1	3415	755	27	1		1	CHSY3	5	129241299	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08	50630816	129241299	51673961	28	3041											
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131953819	131953819	+	Silent	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	131953819	A	G	131953819	2	3	46	1	0	0	0	0	0	0	0	1	12997	204	8	3		3	RAD50	5	131953819	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08	2712520	131953819	48961441	29	3042											
ZNF346	23567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176471535	176471535	+	Splice_Site	SNP	G	G	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	176471535	G	C	176471535	5	2	46	1	0	0	0	0	0	0	1	0	17872	1275	44	4	532	4	ZNF346	5	176471535	Splice_Site	SNP	G	TCGA-A4-8630-01A-11D-2396-08	44517716	176471535	4443725	30	3043											
CDYL	9425	hgsc.bcm.edu	37	6	4891972	4891972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	4891972	A	G	4891972	3	3	46	1	0	0	0	0	1	0	0	0	3187	14	1	3	56	3	CDYL	6	4891972	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08		4891972	166223095	31	3044											
TAP1	6890	broad.mit.edu;bcgsc.ca	37	6	32813531	32813531	+	Missense_Mutation	SNP	C	C	G	rs200753447		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	32813531	C	G	32813531	3	3	46	1	0	0	0	0	1	0	0	0	15562	652	23	4	178	4	TAP1	6	32813531	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	27921559	32813531	138301536	32	3045											
TIAM2	26230	bcgsc.ca	37	6	155566798	155566798	+	Silent	SNP	G	G	A	rs201618143		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	155566798	G	A	155566798	2	1	46	1	0	0	0	0	0	0	0	1	15903	1103	39	1		1	TIAM2	6	155566798	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	122753267	155566798	15548269	33	3046											
WDR27	253769	hgsc.bcm.edu	37	6	170047892	170047892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	170047892	C	T	170047892	3	4	46	1	0	0	0	0	1	0	0	0	17296	536	19	1	979	1	WDR27	6	170047892	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	14481094	170047892	1067175	34	3047											
AMPH	273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	38431574	38431574	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	-	38431574	A	-	38431574	7	5	46	1	0	1	0	1	0	0	0	0	588	214	8	0	446	0	AMPH	7	38431574	Frame_Shift_Del	DEL	A	TCGA-A4-8630-01A-11D-2396-08		38431574	120707089	35	3048											
ASNS	440	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	97482647	97482647	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	-	97482647	C	-	97482647	7	5	46	1	0	1	0	1	0	0	0	0	1048	477	17	0	407	0	ASNS	7	97482647	Frame_Shift_Del	DEL	C	TCGA-A4-8630-01A-11D-2396-08	59051073	97482647	61656016	36	3049											
ZC3HAV1	56829	hgsc.bcm.edu	37	7	138738764	138738764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	138738764	C	A	138738764	3	1	46	1	0	0	0	0	1	0	0	0	17587	912	32	4	455	4	ZC3HAV1	7	138738764	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	41256117	138738764	20399899	37	3050											
SGK223	0	hgsc.bcm.edu;broad.mit.edu	37	8	8176328	8176328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	8176328	C	T	8176328	3	4	46	1	0	0	0	0	1	0	0	0	14223	739	26	2	655	2	SGK223	8	8176328	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		8176328	138187694	38	3051											
ADAM7	8756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	24339727	24339728	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	TA	24339728	-	TA	24339727	7	5	46	1	0	1	1	0	0	0	0	0	251	564	20	0	812	0	ADAM7	8	24339727	Frame_Shift_Ins	INS	-	TCGA-A4-8630-01A-11D-2396-08	16163399	24339727	122024295	39	3052											
B4GALT1	2683	bcgsc.ca	37	9	33135275	33135275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	33135275	C	T	33135275	3	4	46	1	0	0	0	0	1	0	0	0	1270	652	23	1	656	1	B4GALT1	9	33135275	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		33135275	108078156	40	3053											
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88284416	88284416	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	88284416	T	G	88284416	3	3	46	1	0	0	0	0	1	0	0	0	400	1783	62	5	2990	5	AGTPBP1	9	88284416	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	55149141	88284416	52929015	41	3054											
CCBL1	883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131597888	131597888	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	131597888	T	A	131597888	3	1	46	1	0	0	0	0	1	0	0	0	2734	1638	57	5	370	5	CCBL1	9	131597888	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	43313472	131597888	9615543	42	3055											
LRRC8A	56262	hgsc.bcm.edu	37	9	131670920	131670920	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	131670920	G	T	131670920	4	4	46	1	0	0	0	0	0	1	0	0	9028	1291	45	4	1479	4	LRRC8A	9	131670920	Nonsense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	73032	131670920	9542511	43	3056											
NFKB2	4791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104158555	104158555	+	Missense_Mutation	SNP	G	G	A	rs45580031	alternate_allele	TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	104158555	G	A	104158555	3	1	46	1	0	0	0	0	1	0	0	0	10383	1116	39	1	1093	1	NFKB2	10	104158555	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08		104158555	31376192	44	3057											
SMC3	9126	hgsc.bcm.edu	37	10	112342364	112342364	+	Silent	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	112342364	A	G	112342364	2	3	46	1	0	0	0	0	0	0	0	1	14797	359	13	3		3	SMC3	10	112342364	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08	8183809	112342364	23192383	45	3058											
TCERG1L	256536	broad.mit.edu	37	10	133058651	133058651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	133058651	C	T	133058651	3	4	46	1	0	0	0	0	1	0	0	0	15698	768	27	1	1069	1	TCERG1L	10	133058651	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	20716287	133058651	2476096	46	3059											
TMEM132A	54972	hgsc.bcm.edu	37	11	60702116	60702116	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	60702116	C	G	60702116	3	3	46	1	0	0	0	0	1	0	0	0	16057	564	20	4	1753	4	TMEM132A	11	60702116	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		60702116	74304400	47	3060											
CTSC	1075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	88045694	88045694	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	88045694	G	C	88045694	3	2	46	1	0	0	0	0	1	0	0	0	4033	1029	36	4	1064	4	CTSC	11	88045694	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	27343578	88045694	46960822	48	3061											
MAML2	84441	hgsc.bcm.edu	37	11	95825424	95825424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	95825424	G	T	95825424	3	4	46	1	0	0	0	0	1	0	0	0	9213	1386	48	4	1715	4	MAML2	11	95825424	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	7779730	95825424	39181092	49	3062											
ROBO3	64221	hgsc.bcm.edu	37	11	124739923	124739923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	124739923	C	T	124739923	3	4	46	1	0	0	0	0	1	0	0	0	13528	768	27	1	739	1	ROBO3	11	124739923	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	28914499	124739923	10266593	50	3063											
FGF6	2251	hgsc.bcm.edu	37	12	4554425	4554425	+	Silent	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	4554425	G	A	4554425	2	1	46	1	0	0	0	0	0	0	0	1	5863	1190	42	2		2	FGF6	12	4554425	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08		4554425	129297470	51	3064											
DIP2B	57609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	51102296	51102296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	51102296	C	A	51102296	3	1	46	1	0	0	0	0	1	0	0	0	4530	681	24	4	2686	4	DIP2B	12	51102296	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	46547871	51102296	82749599	52	3065											
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51450186	51450186	+	Silent	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	51450186	G	A	51450186	2	1	46	1	0	0	0	0	0	0	0	1	8743	1281	45	2		2	LETMD1	12	51450186	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	347890	51450186	82401709	53	3066											
OR6C1	390321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55714436	55714436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	55714436	A	G	55714436	3	3	46	1	0	0	0	0	1	0	0	0	11197	275	10	3	55	3	OR6C1	12	55714436	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08	4264250	55714436	78137459	54	3067											
STAB2	55576	hgsc.bcm.edu	37	12	104139037	104139037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	104139037	T	C	104139037	3	2	46	1	0	0	0	0	1	0	0	0	15250	1551	54	3	6344	3	STAB2	12	104139037	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	48424601	104139037	29712858	55	3068											
NCOR2	9612	hgsc.bcm.edu	37	12	124887102	124887102	+	Silent	SNP	C	C	T	rs7488825		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	124887102	C	T	124887102	2	4	46	1	0	0	0	0	0	0	0	1	10243	796	28	2		2	NCOR2	12	124887102	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08	20748065	124887102	8964793	56	3069											
TDRD3	81550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	61034625	61034625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	61034625	G	A	61034625	3	1	46	1	0	0	0	0	1	0	0	0	15744	1348	47	2	318	2	TDRD3	13	61034625	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08		61034625	54135253	57	3070											
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21821646	21821648	+	Frame_Shift_Del	DEL	CCT	CCT	-	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	-	21821648	CCT	-	21821646	7	5	46	1	0	1	0	1	0	0	0	0	15408	521	18	0	152	0	SUPT16H	14	21821646	Frame_Shift_Del	DEL	CCT	TCGA-A4-8630-01A-11D-2396-08		21821646	85527894	58	3071											
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	36104756	36104756	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	36104756	G	C	36104756	3	2	46	1	0	0	0	0	1	0	0	0	13026	1261	44	4	2096	4	RALGAPA1	14	36104756	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	14283110	36104756	71244784	59	3072											
PSMC6	5706	hgsc.bcm.edu	37	14	53194309	53194309	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	53194309	T	G	53194309	3	3	46	1	0	0	0	0	1	0	0	0	12701	1667	58	5	1240	5	PSMC6	14	53194309	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	17089553	53194309	54155231	60	3073											
UBE3A	7337	hgsc.bcm.edu	37	15	25615995	25615995	+	Silent	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	25615995	A	G	25615995	2	3	46	1	0	0	0	0	0	0	0	1	16891	59	3	3		3	UBE3A	15	25615995	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08		25615995	76915397	61	3074											
MGA	23269	hgsc.bcm.edu	37	15	42041519	42041519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	42041519	C	G	42041519	3	3	46	1	0	0	0	0	1	0	0	0	9547	913	32	4	5776	4	MGA	15	42041519	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	16425524	42041519	60489873	62	3075											
DUOXA2	405753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45410080	45410080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	45410080	C	A	45410080	3	1	46	1	0	0	0	0	1	0	0	0	4805	564	20	4	958	4	DUOXA2	15	45410080	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	3368561	45410080	57121312	63	3076											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72172105	72172105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	72172105	T	C	72172105	3	2	46	1	0	0	0	0	1	0	0	0	10091	1783	62	3	2002	3	MYO9A	15	72172105	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	26762025	72172105	30359287	64	3077											
TMEM204	79652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1604905	1604905	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	1604905	A	T	1604905	3	4	46	1	0	0	0	0	1	0	0	0	16141	217	8	5	569	5	TMEM204	16	1604905	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08		1604905	88749848	65	3078											
SCNN1B	6338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23387095	23387095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	23387095	C	T	23387095	3	4	46	1	0	0	0	0	1	0	0	0	13941	652	23	1	1215	1	SCNN1B	16	23387095	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	21782190	23387095	66967658	66	3079											
ELMO3	79767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67236622	67236622	+	Silent	SNP	T	T	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	67236622	T	A	67236622	2	1	46	1	0	0	0	0	0	0	0	1	5069	1596	56	5		5	ELMO3	16	67236622	Silent	SNP	T	TCGA-A4-8630-01A-11D-2396-08	43849527	67236622	23118131	67	3080											
DEF8	54849	hgsc.bcm.edu;broad.mit.edu	37	16	90023966	90023966	+	Silent	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	90023966	G	A	90023966	2	1	46	1	0	0	0	0	0	0	0	1	4389	991	35	2		2	DEF8	16	90023966	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	22787344	90023966	330787	68	3081											
TEKT1	83659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	6703554	6703554	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	6703554	C	A	6703554	5	1	46	1	0	0	0	0	0	0	1	0	15764	927	32	4	211	4	TEKT1	17	6703554	Splice_Site	SNP	C	TCGA-A4-8630-01A-11D-2396-08		6703554	74491656	69	3082											
POLR2A	5430	bcgsc.ca	37	17	7402776	7402776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	7402776	G	A	7402776	3	1	46	1	0	0	0	0	1	0	0	0	12221	1087	38	1	1675	1	POLR2A	17	7402776	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	699222	7402776	73792434	70	3083											
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17701717	17701717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	17701717	G	A	17701717	3	1	46	1	0	0	0	0	1	0	0	0	13020	1203	42	2	5457	2	RAI1	17	17701717	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	10298941	17701717	63493493	71	3084											
ALDH3A2	224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19566808	19566808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	19566808	A	G	19566808	3	3	46	1	0	0	0	0	1	0	0	0	498	217	8	3	1129	3	ALDH3A2	17	19566808	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08	1865091	19566808	61628402	72	3085											
TAF15	8148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34171754	34171754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	34171754	G	A	34171754	3	1	46	1	0	0	0	0	1	0	0	0	15530	1261	44	2	1509	2	TAF15	17	34171754	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	14604946	34171754	47023456	73	3086											
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305510	39305510	+	Silent	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	39305510	G	A	39305510	2	1	46	1	0	0	0	0	0	0	0	1	8561	1195	42	2		2	KRTAP4-5	17	39305510	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	5133756	39305510	41889700	74	3087											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65074431	65074431	+	Silent	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	65074431	G	A	65074431	2	1	46	1	0	0	0	0	0	0	0	1	7056	929	33	2		2	HELZ	17	65074431	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	25768921	65074431	16120779	75	3088											
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2718194	2718194	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	2718194	C	T	2718194	4	4	46	1	0	0	0	0	0	1	0	0	14801	827	29	2	2369	2	SMCHD1	18	2718194	Nonsense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		2718194	75359054	76	3089											
TCF4	6925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	52921812	52921812	+	Silent	SNP	A	A	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	52921812	A	G	52921812	2	3	46	1	0	0	0	0	0	0	0	1	15707	126	5	3		3	TCF4	18	52921812	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08	50203618	52921812	25155436	77	3090											
APC2	10297	hgsc.bcm.edu	37	19	1460857	1460857	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	1460857	G	T	1460857	5	4	46	1	0	0	0	0	0	0	1	0	764	1275	44	4	1564	4	APC2	19	1460857	Splice_Site	SNP	G	TCGA-A4-8630-01A-11D-2396-08		1460857	57668126	78	3091											
KHSRP	8570	hgsc.bcm.edu	37	19	6420477	6420477	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	6420477	G	C	6420477	4	2	46	1	0	0	0	0	0	1	0	0	8158	1294	45	4	1768	4	KHSRP	19	6420477	Nonsense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	4959620	6420477	52708506	79	3092											
FBN3	84467	hgsc.bcm.edu	37	19	8203361	8203361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	8203361	C	A	8203361	3	1	46	1	0	0	0	0	1	0	0	0	5711	710	25	4	7700	4	FBN3	19	8203361	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	1782884	8203361	50925622	80	3093											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9056220	9056220	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	9056220	G	C	9056220	3	2	46	1	0	0	0	0	1	0	0	0	9980	1377	48	4	12625	4	MUC16	19	9056220	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	852859	9056220	50072763	81	3094											
ZNF93	81931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	20044771	20044771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	T	20044771	C	T	20044771	3	4	46	1	0	0	0	0	1	0	0	0	18214	565	20	2	1021	2	ZNF93	19	20044771	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	10988551	20044771	39084212	82	3095											
ZNF585A	199704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37642652	37642653	+	Missense_Mutation	DNP	GC	GC	TA	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	TA	37642653	GC	TA	37642652	3	4	46	1	0	0	0	0	1	0	0	0	18029	1203	42	4	164	4	ZNF585A	19	37642652	Missense_Mutation	DNP	GC	TCGA-A4-8630-01A-11D-2396-08	17597881	37642652	21486331	83	3096											
KCNB1	3745	hgsc.bcm.edu	37	20	48098853	48098853	+	Silent	SNP	C	C	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	48098853	C	G	48098853	2	3	46	1	0	0	0	0	0	0	0	1	8019	755	27	4		4	KCNB1	20	48098853	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08		48098853	14926667	84	3097											
SYNJ1	8867	hgsc.bcm.edu	37	21	34029042	34029042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	34029042	T	C	34029042	3	2	46	1	0	0	0	0	1	0	0	0	15464	1551	54	3	2044	3	SYNJ1	21	34029042	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08		34029042	14100853	85	3098											
DNMT3L	29947	hgsc.bcm.edu	37	21	45668957	45668957	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	45668957	G	C	45668957	3	2	46	1	0	0	0	0	1	0	0	0	4680	1174	41	4	224	4	DNMT3L	21	45668957	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	11639915	45668957	2460938	86	3099											
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50903300	50903300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	A	50903300	G	A	50903300	3	1	46	1	0	0	0	0	1	0	0	0	13871	1232	43	2	4418	2	SBF1	22	50903300	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08		50903300	401266	87	3100											
GPR64	10149	hgsc.bcm.edu	37	X	19026233	19026233	+	Silent	SNP	C	C	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	19026233	C	G	19026233	2	3	46	1	0	0	0	0	0	0	0	1	6712	581	21	4		4	GPR64	23	19026233	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08		19026233	136244327	88	3101											
RPS6KA3	6197	hgsc.bcm.edu	37	X	20206637	20206637	+	Silent	SNP	T	T	C	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	C	20206637	T	C	20206637	2	2	46	1	0	0	0	0	0	0	0	1	13665	1606	56	3		3	RPS6KA3	23	20206637	Silent	SNP	T	TCGA-A4-8630-01A-11D-2396-08	1180404	20206637	135063923	89	3102											
COL4A6	1288	hgsc.bcm.edu	37	X	107447618	107447618	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	G	107447618	C	G	107447618	3	3	46	1	0	0	0	0	1	0	0	0	3697	797	28	4	4496	4	COL4A6	23	107447618	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	87240981	107447618	47822942	90	3103											
PLCH2	9651	broad.mit.edu	37	1	2426375	2426375	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	2426375	C	T	2426375	2	4	47	1	0	0	0	0	0	0	0	1	12045	912	32	2		2	PLCH2	1	2426375	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		2426375	246824246	1	3104											
NPHP4	261734	broad.mit.edu	37	1	5927943	5927943	+	Missense_Mutation	SNP	G	G	C	rs139767853	alternate_allele	TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	5927943	G	C	5927943	3	2	47	1	0	0	0	0	1	0	0	0	10588	1087	38	4	979	4	NPHP4	1	5927943	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	3501568	5927943	243322678	2	3105											
H6PD	9563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9324818	9324818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	9324818	A	G	9324818	3	3	47	1	0	0	0	0	1	0	0	0	6943	159	6	3	2280	3	H6PD	1	9324818	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	3396875	9324818	239925803	3	3106											
DHRS3	9249	broad.mit.edu;ucsc.edu	37	1	12628411	12628411	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	12628411	T	C	12628411	2	2	47	1	0	0	0	0	0	0	0	1	4493	1567	55	3		3	DHRS3	1	12628411	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	3303593	12628411	236622210	4	3107											
SCP2	6342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53416459	53416459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	53416459	C	T	53416459	3	4	47	1	0	0	0	0	1	0	0	0	13947	826	29	2	246	2	SCP2	1	53416459	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	40788048	53416459	195834162	5	3108											
PODN	127435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53535630	53535630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	53535630	G	T	53535630	3	4	47	1	0	0	0	0	1	0	0	0	12185	1116	39	4	253	4	PODN	1	53535630	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	119171	53535630	195714991	6	3109											
WLS	79971	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	68697907	68697910	+	Frame_Shift_Del	DEL	TTTG	TTTG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TTTG	TTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	68697910	TTTG	-	68697907	7	5	47	1	0	1	0	1	0	0	0	0	17388	1493	52	0	1723	0	WLS	1	68697907	Frame_Shift_Del	DEL	TTTG	TCGA-A4-A48D-01A-11D-A25F-10	15162277	68697907	180552714	7	3110											
NEXN	91624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78395127	78395127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	78395127	G	C	78395127	3	2	47	1	0	0	0	0	1	0	0	0	10362	943	33	4	1021	4	NEXN	1	78395127	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	9697220	78395127	170855494	8	3111											
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110734657	110734657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	110734657	G	A	110734657	3	1	47	1	0	0	0	0	1	0	0	0	14693	1232	43	2	950	2	SLC6A17	1	110734657	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	32339530	110734657	138515964	9	3112											
SLC16A4	9122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110921516	110921516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	110921516	C	A	110921516	3	1	47	1	0	0	0	0	1	0	0	0	14423	623	22	4	490	4	SLC16A4	1	110921516	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	186859	110921516	138329105	10	3113											
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151261140	151261140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	151261140	T	G	151261140	3	3	47	1	0	0	0	0	1	0	0	0	18104	1551	54	5	2258	5	ZNF687	1	151261140	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	40339624	151261140	97989481	11	3114											
ADAR	103	broad.mit.edu	37	1	154574370	154574370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	154574370	C	A	154574370	3	1	47	1	0	0	0	0	1	0	0	0	281	797	28	4	2988	4	ADAR	1	154574370	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	3313230	154574370	94676251	12	3115											
DCST1	149095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155015935	155015935	+	Silent	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	155015935	G	T	155015935	2	4	47	1	0	0	0	0	0	0	0	1	4304	1335	47	4		4	DCST1	1	155015935	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	441565	155015935	94234686	13	3116											
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167825476	167825476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	167825476	C	T	167825476	3	4	47	1	0	0	0	0	1	0	0	0	293	565	20	2	2802	2	ADCY10	1	167825476	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	12809541	167825476	81425145	14	3117											
KCNT2	343450	broad.mit.edu;bcgsc.ca	37	1	196227503	196227503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	196227503	C	T	196227503	3	4	47	1	0	0	0	0	1	0	0	0	8099	652	23	1	387	1	KCNT2	1	196227503	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	28402027	196227503	53023118	15	3118											
ASPM	259266	ucsc.edu;bcgsc.ca	37	1	197069639	197069639	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	197069639	G	A	197069639	2	1	47	1	0	0	0	0	0	0	0	1	1056	1280	45	2		2	ASPM	1	197069639	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	842136	197069639	52180982	16	3119											
CHI3L1	1116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203151959	203151959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	203151959	T	C	203151959	3	2	47	1	0	0	0	0	1	0	0	0	3342	1850	64	3	684	3	CHI3L1	1	203151959	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	6082320	203151959	46098662	17	3120											
CENPF	1063	broad.mit.edu	37	1	214820384	214820384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	214820384	G	A	214820384	3	1	47	1	0	0	0	0	1	0	0	0	3233	1291	45	2	7517	2	CENPF	1	214820384	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	11668425	214820384	34430237	18	3121											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21227463	21227463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	21227463	T	C	21227463	3	2	47	1	0	0	0	0	1	0	0	0	785	1406	49	3	1830	3	APOB	2	21227463	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10		21227463	221971910	19	3122											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29295663	29295663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	29295663	G	A	29295663	3	1	47	1	0	0	0	0	1	0	0	0	2193	1232	43	2	2409	2	C2orf71	2	29295663	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	8068200	29295663	213903710	20	3123											
BAZ2B	29994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160206728	160206728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	160206728	C	T	160206728	3	4	47	1	0	0	0	0	1	0	0	0	1332	922	32	2	2192	2	BAZ2B	2	160206728	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	130911065	160206728	82992645	21	3124											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170012842	170012842	+	Silent	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	170012842	G	T	170012842	2	4	47	1	0	0	0	0	0	0	0	1	8963	929	33	4		4	LRP2	2	170012842	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	9806114	170012842	73186531	22	3125											
USP37	57695	broad.mit.edu;bcgsc.ca	37	2	219330816	219330816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	219330816	C	T	219330816	3	4	47	1	0	0	0	0	1	0	0	0	17080	826	29	2	580	2	USP37	2	219330816	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	49317974	219330816	23868557	23	3126											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	233676027	233676029	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	233676029	CTT	-	233676027	7	5	47	1	0	1	0	1	0	0	0	0	6385	565	20	0	2100	0	GIGYF2	2	233676027	In_Frame_Del	DEL	CTT	TCGA-A4-A48D-01A-11D-A25F-10	14345211	233676027	9523346	24	3127											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	4878618	4878618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	4878618	A	C	4878618	3	2	47	1	0	0	0	0	1	0	0	0	7927	202	7	5	8423	5	ITPR1	3	4878618	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		4878618	193143812	25	3128											
NUP210	23225	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13399893	13399893	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	13399893	G	A	13399893	2	1	47	1	0	0	0	0	0	0	0	1	10767	1277	45	2		2	NUP210	3	13399893	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	8521275	13399893	184622537	26	3129											
SH3BP5	9467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	15298471	15298471	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	15298471	G	A	15298471	2	1	47	1	0	0	0	0	0	0	0	1	14260	991	35	2		2	SH3BP5	3	15298471	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	1898578	15298471	182723959	27	3130											
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	15765925	15765925	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	15765925	G	A	15765925	2	1	47	1	0	0	0	0	0	0	0	1	656	1280	45	2		2	ANKRD28	3	15765925	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	467454	15765925	182256505	28	3131											
SLC22A13	9390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38316203	38316203	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	38316203	T	C	38316203	2	2	47	1	0	0	0	0	0	0	0	1	14457	1567	55	3		3	SLC22A13	3	38316203	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	22550278	38316203	159706227	29	3132											
SCN10A	6336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38755540	38755540	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	38755540	A	C	38755540	3	2	47	1	0	0	0	0	1	0	0	0	13925	188	7	5	2185	5	SCN10A	3	38755540	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	439337	38755540	159266890	30	3133											
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	42577629	42577629	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	42577629	C	T	42577629	2	4	47	1	0	0	0	0	0	0	0	1	17181	755	27	1		1	VIPR1	3	42577629	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	3822089	42577629	155444801	31	3134											
FLNB	2317	broad.mit.edu;bcgsc.ca	37	3	58154281	58154281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	58154281	A	G	58154281	3	3	47	1	0	0	0	0	1	0	0	0	5941	391	14	3	7584	3	FLNB	3	58154281	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	15576652	58154281	139868149	32	3135											
ROPN1	54763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123695737	123695737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	123695737	C	G	123695737	3	3	47	1	0	0	0	0	1	0	0	0	13536	835	29	4	446	4	ROPN1	3	123695737	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	65541456	123695737	74326693	33	3136											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154855893	154855893	+	Silent	SNP	T	T	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	154855893	T	A	154855893	2	1	47	1	0	0	0	0	0	0	0	1	9652	1596	56	5		5	MME	3	154855893	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	31160156	154855893	43166537	34	3137											
MUC4	4585	bcgsc.ca	37	3	195510995	195510995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	195510995	C	T	195510995	3	4	47	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195510995	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	40655102	195510995	2511435	35	3138											
MUC4	4585	bcgsc.ca	37	3	195515374	195515374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	195515374	G	T	195515374	3	4	47	1	0	0	0	0	1	0	0	0	9985	1000	35	4		4	MUC4	3	195515374	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	4379	195515374	2507056	36	3139											
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	22436990	22436990	+	Missense_Mutation	SNP	C	C	G	rs146147575		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	22436990	C	G	22436990	3	3	47	1	0	0	0	0	1	0	0	0	6646	478	17	4	2618	4	GPR125	4	22436990	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		22436990	168717286	37	3140											
TMEM156	80008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	38988027	38988027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	38988027	T	A	38988027	3	1	47	1	0	0	0	0	1	0	0	0	16085	1841	64	5	146	5	TMEM156	4	38988027	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	16551037	38988027	152166249	38	3141											
CLOCK	9575	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56301748	56301748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	56301748	A	G	56301748	3	3	47	1	0	0	0	0	1	0	0	0	3551	304	11	3	169	3	CLOCK	4	56301748	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	17313721	56301748	134852528	39	3142											
PPP3CA	5530	broad.mit.edu;bcgsc.ca	37	4	102030234	102030236	+	Frame_Shift_Del	DEL	AAC	AAC	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	102030236	AAC	-	102030234	7	5	47	1	0	1	0	1	0	0	0	0	12407	28	1	0	1352	0	PPP3CA	4	102030234	Frame_Shift_Del	DEL	AAC	TCGA-A4-A48D-01A-11D-A25F-10	45728486	102030234	89124042	40	3143											
HSPA4L	22824	broad.mit.edu;bcgsc.ca	37	4	128726257	128726266	+	Frame_Shift_Del	DEL	GAAATTGTAG	GAAATTGTAG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GAAATTGTAG	GAAATTGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	128726266	GAAATTGTAG	-	128726257	7	5	47	1	0	1	0	1	0	0	0	0	7420	943	33	0	1049	0	HSPA4L	4	128726257	Frame_Shift_Del	DEL	GAAATTGTAG	TCGA-A4-A48D-01A-11D-A25F-10	26696023	128726257	62428019	41	3144											
TBC1D9	23158	broad.mit.edu;bcgsc.ca	37	4	141590874	141590874	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	141590874	G	A	141590874	2	1	47	1	0	0	0	0	0	0	0	1	15639	991	35	2		2	TBC1D9	4	141590874	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	12864617	141590874	49563402	42	3145											
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153691183	153691183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	153691183	C	T	153691183	3	4	47	1	0	0	0	0	1	0	0	0	15910	797	28	2	568	2	TIGD4	4	153691183	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	12100309	153691183	37463093	43	3146											
FASTKD3	79072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7867846	7867846	+	Silent	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	7867846	A	G	7867846	2	3	47	1	0	0	0	0	0	0	0	1	5694	40	2	3		3	FASTKD3	5	7867846	Silent	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		7867846	173047414	44	3147											
CDH9	1007	broad.mit.edu	37	5	26988231	26988231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	26988231	G	T	26988231	3	4	47	1	0	0	0	0	1	0	0	0	3119	1368	48	4	2203	4	CDH9	5	26988231	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	19120385	26988231	153927029	45	3148											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37017244	37017247	+	Frame_Shift_Del	DEL	ATAG	ATAG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	ATAG	ATAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	37017247	ATAG	-	37017244	7	5	47	1	0	1	0	1	0	0	0	0	10435	449	16	0	4990	0	NIPBL	5	37017244	Frame_Shift_Del	DEL	ATAG	TCGA-A4-A48D-01A-11D-A25F-10	10029013	37017244	143898016	46	3149											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66449317	66449318	+	Missense_Mutation	DNP	CA	CA	AT	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	AT	66449318	CA	AT	66449317	3	1	47	1	0	0	0	0	1	0	0	0	9334	710	25	4	3789	4	MAST4	5	66449317	Missense_Mutation	DNP	CA	TCGA-A4-A48D-01A-11D-A25F-10	29432073	66449317	114465943	47	3150											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82808190	82808191	+	Missense_Mutation	DNP	CA	CA	GC	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	GC	82808191	CA	GC	82808190	3	3	47	1	0	0	0	0	1	0	0	0	17150	709	25	4	1035	4	VCAN	5	82808190	Missense_Mutation	DNP	CA	TCGA-A4-A48D-01A-11D-A25F-10	16358873	82808190	98107070	48	3151											
GPR98	84059	broad.mit.edu	37	5	89971181	89971181	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	89971181	C	T	89971181	2	4	47	1	0	0	0	0	0	0	0	1	6728	845	30	2		2	GPR98	5	89971181	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	7162991	89971181	90944079	49	3152											
GIN1	54826	broad.mit.edu	37	5	102432357	102432357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	102432357	G	C	102432357	3	2	47	1	0	0	0	0	1	0	0	0	6393	1020	36	4	394	4	GIN1	5	102432357	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	12461176	102432357	78482903	50	3153											
TXNDC15	79770	broad.mit.edu;bcgsc.ca	37	5	134223683	134223688	+	In_Frame_Del	DEL	TGGCGC	TGGCGC	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TGGCGC	TGGCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	134223688	TGGCGC	-	134223683	7	5	47	1	0	1	0	1	0	0	0	0	16806	1461	51	0	408	0	TXNDC15	5	134223683	In_Frame_Del	DEL	TGGCGC	TCGA-A4-A48D-01A-11D-A25F-10	31791326	134223683	46691577	51	3154											
WNT8A	7478	broad.mit.edu	37	5	137426733	137426733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	137426733	G	T	137426733	3	4	47	1	0	0	0	0	1	0	0	0	17408	1319	46	4	1049	4	WNT8A	5	137426733	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	3203050	137426733	43488527	52	3155											
BRD8	10902	broad.mit.edu;bcgsc.ca	37	5	137506838	137506838	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	137506838	C	-	137506838	7	5	47	1	0	1	0	1	0	0	0	0	1508	507	18	0	3838	0	BRD8	5	137506838	Frame_Shift_Del	DEL	C	TCGA-A4-A48D-01A-11D-A25F-10	80105	137506838	43408422	53	3156											
NMUR2	56923	broad.mit.edu;bcgsc.ca	37	5	151784506	151784506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	151784506	C	A	151784506	3	1	47	1	0	0	0	0	1	0	0	0	10514	478	17	4	1094	4	NMUR2	5	151784506	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	14277668	151784506	29130754	54	3157											
HUS1B	135458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	656335	656335	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	656335	A	T	656335	3	4	47	1	0	0	0	0	1	0	0	0	7467	14	1	5	230	5	HUS1B	6	656335	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		656335	170458732	55	3158											
SERPINB6	5269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	2948772	2948772	+	Silent	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	2948772	C	A	2948772	2	1	47	1	0	0	0	0	0	0	0	1	14118	581	21	4		4	SERPINB6	6	2948772	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	2292437	2948772	168166295	56	3159											
RHAG	6005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49586991	49586991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	49586991	C	T	49586991	3	4	47	1	0	0	0	0	1	0	0	0	13328	507	18	2	1023	2	RHAG	6	49586991	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	46638219	49586991	121528076	57	3160											
CD164	8763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	109690201	109690201	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	109690201	C	T	109690201	2	4	47	1	0	0	0	0	0	0	0	1	2971	813	29	2		2	CD164	6	109690201	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	60103210	109690201	61424866	58	3161											
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	158330822	158330822	+	Silent	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	158330822	T	G	158330822	2	3	47	1	0	0	0	0	0	0	0	1	14922	1594	55	5		5	SNX9	6	158330822	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	48640621	158330822	12784245	59	3162											
MICALL2	79778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1478499	1478499	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	1478499	T	G	1478499	3	3	47	1	0	0	0	0	1	0	0	0	9581	1841	64	5	647	5	MICALL2	7	1478499	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10		1478499	157660164	60	3163											
HIBADH	11112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27582616	27582616	+	Silent	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	27582616	C	G	27582616	2	3	47	1	0	0	0	0	0	0	0	1	7106	581	21	4		4	HIBADH	7	27582616	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	26104117	27582616	131556047	61	3164											
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	43508701	43508701	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	43508701	A	-	43508701	7	5	47	1	0	1	0	1	0	0	0	0	7049	233	9	0	3150	0	HECW1	7	43508701	Frame_Shift_Del	DEL	A	TCGA-A4-A48D-01A-11D-A25F-10	15926085	43508701	115629962	62	3165											
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99434139	99434139	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	99434139	T	-	99434139	7	5	47	1	0	1	0	1	0	0	0	0	4181	1596	56	0	141	0	CYP3A43	7	99434139	Frame_Shift_Del	DEL	T	TCGA-A4-A48D-01A-11D-A25F-10	55925438	99434139	59704524	63	3166											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100344177	100344177	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	100344177	C	T	100344177	2	4	47	1	0	0	0	0	0	0	0	1	17525	842	30	2		2	ZAN	7	100344177	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	910038	100344177	58794486	64	3167											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	113519562	113519562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	113519562	T	C	113519562	3	2	47	1	0	0	0	0	1	0	0	0	12381	1850	64	3	1787	3	PPP1R3A	7	113519562	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	13175385	113519562	45619101	65	3168											
CTTNBP2	83992	bcgsc.ca	37	7	117375372	117375372	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	117375372	C	T	117375372	2	4	47	1	0	0	0	0	0	0	0	1	4047	593	21	2		2	CTTNBP2	7	117375372	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	3855810	117375372	41763291	66	3169											
PAXIP1	22976	broad.mit.edu	37	7	154754041	154754041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	154754041	C	T	154754041	3	4	47	1	0	0	0	0	1	0	0	0	11494	478	17	2	1140	2	PAXIP1	7	154754041	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	37378669	154754041	4384622	67	3170											
PTPRN2	5799	broad.mit.edu;bcgsc.ca	37	7	157369349	157369349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	157369349	G	C	157369349	3	2	47	1	0	0	0	0	1	0	0	0	12821	1252	44	4	328	4	PTPRN2	7	157369349	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	2615308	157369349	1769314	68	3171											
MTMR9	66036	broad.mit.edu	37	8	11180146	11180146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	11180146	G	A	11180146	3	1	47	1	0	0	0	0	1	0	0	0	9957	1145	40	1	1537	1	MTMR9	8	11180146	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10		11180146	135183876	69	3172											
DEFB136	613210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11831570	11831570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	11831570	G	A	11831570	3	1	47	1	0	0	0	0	1	0	0	0	4422	1203	42	2	125	2	DEFB136	8	11831570	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	651424	11831570	134532452	70	3173											
SCARA3	51435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	27516084	27516084	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	27516084	C	T	27516084	4	4	47	1	0	0	0	0	0	1	0	0	13892	711	25	2	415	2	SCARA3	8	27516084	Nonsense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	15684514	27516084	118847938	71	3174											
KCNU1	157855	broad.mit.edu	37	8	36703123	36703123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	36703123	C	A	36703123	3	1	47	1	0	0	0	0	1	0	0	0	8100	479	17	4	1795	4	KCNU1	8	36703123	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	9187039	36703123	109660899	72	3175											
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	37730035	37730036	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	37730036	-	T	37730035	7	5	47	1	0	1	1	0	0	0	0	0	12906	797	28	0	1578	0	RAB11FIP1	8	37730035	Frame_Shift_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	1026912	37730035	108633987	73	3176											
HNF4G	3174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	76463728	76463728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	76463728	A	G	76463728	3	3	47	1	0	0	0	0	1	0	0	0	7261	202	7	3	472	3	HNF4G	8	76463728	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	38733693	76463728	69900294	74	3177											
CA1	759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	86250502	86250502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	86250502	C	T	86250502	3	4	47	1	0	0	0	0	1	0	0	0	2512	835	29	2	595	2	CA1	8	86250502	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	9786774	86250502	60113520	75	3178											
DECR1	1666	hgsc.bcm.edu;bcgsc.ca	37	8	91029497	91029498	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	91029498	-	A	91029497	7	5	47	1	0	1	1	0	0	0	0	0	4384	1261	44	0	221	0	DECR1	8	91029497	Frame_Shift_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	4778995	91029497	55334525	76	3179											
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101076121	101076121	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	101076121	C	G	101076121	3	3	47	1	0	0	0	0	1	0	0	0	13318	913	32	4	2999	4	RGS22	8	101076121	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	10046624	101076121	45287901	77	3180											
ZNF572	137209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	125988719	125988719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	125988719	A	C	125988719	3	2	47	1	0	0	0	0	1	0	0	0	18016	246	9	5	215	5	ZNF572	8	125988719	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	24912598	125988719	20375303	78	3181											
KCNK9	51305	broad.mit.edu;bcgsc.ca	37	8	140631226	140631231	+	In_Frame_Del	DEL	TGTTCA	TGTTCA	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TGTTCA	TGTTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	140631231	TGTTCA	-	140631226	7	5	47	1	0	1	0	1	0	0	0	0	8079	1696	59	0	728	0	KCNK9	8	140631226	In_Frame_Del	DEL	TGTTCA	TCGA-A4-A48D-01A-11D-A25F-10	14642507	140631226	5732796	79	3182											
ZNF251	90987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145947050	145947050	+	Silent	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	145947050	A	T	145947050	2	4	47	1	0	0	0	0	0	0	0	1	17808	10	1	5		5	ZNF251	8	145947050	Silent	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	5315824	145947050	416972	80	3183											
TLN1	7094	broad.mit.edu	37	9	35704480	35704480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	35704480	C	T	35704480	3	4	47	1	0	0	0	0	1	0	0	0	15959	739	26	2	1781	2	TLN1	9	35704480	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		35704480	105508951	81	3184											
BAAT	570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104125253	104125253	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	104125253	T	C	104125253	2	2	47	1	0	0	0	0	0	0	0	1	1280	1625	57	3		3	BAAT	9	104125253	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	68420773	104125253	37088178	82	3185											
GPR107	57720	broad.mit.edu;bcgsc.ca	37	9	132845879	132845879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	132845879	A	G	132845879	3	3	47	1	0	0	0	0	1	0	0	0	6630	15	1	3	584	3	GPR107	9	132845879	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	28720626	132845879	8367552	83	3186											
ANK3	288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61829526	61829526	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	61829526	A	C	61829526	3	2	47	1	0	0	0	0	1	0	0	0	622	333	12	5	2361	5	ANK3	10	61829526	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		61829526	73705221	84	3187											
NUDT13	25961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74884990	74884990	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	74884990	T	G	74884990	3	3	47	1	0	0	0	0	1	0	0	0	10736	1522	53	5	598	5	NUDT13	10	74884990	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	13055464	74884990	60649757	85	3188											
MAT1A	4143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	82039973	82039973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	82039973	G	T	82039973	3	4	47	1	0	0	0	0	1	0	0	0	9336	1087	38	4	702	4	MAT1A	10	82039973	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	7154983	82039973	53494774	86	3189											
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	83635455	83635455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	83635455	C	G	83635455	3	3	47	1	0	0	0	0	1	0	0	0	10656	913	32	4	361	4	NRG3	10	83635455	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	1595482	83635455	51899292	87	3190											
LRIT2	340745	ucsc.edu;bcgsc.ca	37	10	85984556	85984556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	85984556	A	T	85984556	3	4	47	1	0	0	0	0	1	0	0	0	8955	304	11	5	1235	5	LRIT2	10	85984556	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	2349101	85984556	49550191	88	3191											
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88681453	88681453	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	88681453	G	A	88681453	5	1	47	1	0	0	0	0	0	0	1	0	1469	1275	44	2	1377	2	BMPR1A	10	88681453	Splice_Site	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	2696897	88681453	46853294	89	3192											
CDHR5	53841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	621148	621148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	621148	T	C	621148	3	2	47	1	0	0	0	0	1	0	0	0	3124	1696	59	3	1852	3	CDHR5	11	621148	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10		621148	134385368	90	3193											
MUC2	4583	broad.mit.edu	37	11	1093271	1093271	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	1093271	C	G	1093271	3	3	47	1	0	0	0	0	1	0	0	0	9982	478	17	4	5208	4	MUC2	11	1093271	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	472123	1093271	133913245	91	3194											
MUC5B	727897	broad.mit.edu	37	11	1268538	1268538	+	Silent	SNP	G	G	A	rs74447707		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	1268538	G	A	1268538	2	1	47	1	0	0	0	0	0	0	0	1	9986	1103	39	1		1	MUC5B	11	1268538	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	175267	1268538	133737978	92	3195											
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5510196	5510196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	5510196	T	C	5510196	3	2	47	1	0	0	0	0	1	0	0	0	11121	1493	52	3	262	3	OR52D1	11	5510196	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	4241658	5510196	129496320	93	3196											
SUV420H1	51111	broad.mit.edu	37	11	67925405	67925405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	67925405	C	A	67925405	3	1	47	1	0	0	0	0	1	0	0	0	15426	565	20	4	253	4	SUV420H1	11	67925405	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	62415209	67925405	67081111	94	3197											
MRPL21	219927	broad.mit.edu	37	11	68660882	68660883	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	68660883	-	T	68660882	7	5	47	1	0	1	1	0	0	0	0	0	9794	796	28	0	191	0	MRPL21	11	68660882	Frame_Shift_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	735477	68660882	66345634	95	3198											
PRSS23	11098	broad.mit.edu	37	11	86519059	86519059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	86519059	G	A	86519059	3	1	47	1	0	0	0	0	1	0	0	0	12630	1058	37	1	376	1	PRSS23	11	86519059	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	17858177	86519059	48487457	96	3199											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108381937	108381941	+	Frame_Shift_Del	DEL	CTTCT	CTTCT	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CTTCT	CTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	108381941	CTTCT	-	108381937	7	5	47	1	0	1	0	1	0	0	0	0	5324	565	20	0	1676	0	EXPH5	11	108381937	Frame_Shift_Del	DEL	CTTCT	TCGA-A4-A48D-01A-11D-A25F-10	21862878	108381937	26624579	97	3200											
SIK3	23387	broad.mit.edu	37	11	116729111	116729111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	116729111	G	A	116729111	3	1	47	1	0	0	0	0	1	0	0	0	14332	1115	39	1	1055	1	SIK3	11	116729111	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	8347174	116729111	18277405	98	3201											
SIK3	23387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	116741113	116741113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	116741113	A	G	116741113	3	3	47	1	0	0	0	0	1	0	0	0	14332	159	6	3	2263	3	SIK3	11	116741113	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	12002	116741113	18265403	99	3202											
USP5	8078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6974373	6974374	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	6974374	TG	-	6974373	7	5	47	1	0	1	0	1	0	0	0	0	17093	1464	51	0	2518	0	USP5	12	6974373	Frame_Shift_Del	DEL	TG	TCGA-A4-A48D-01A-11D-A25F-10		6974373	126877522	100	3203											
ATF7IP	55729	broad.mit.edu;bcgsc.ca	37	12	14577475	14577475	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	14577475	C	G	14577475	3	3	47	1	0	0	0	0	1	0	0	0	1087	623	22	4	628	4	ATF7IP	12	14577475	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	7603102	14577475	119274420	101	3204											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40713882	40713882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	40713882	A	T	40713882	3	4	47	1	0	0	0	0	1	0	0	0	9040	98	4	5	5054	5	LRRK2	12	40713882	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	26136407	40713882	93138013	102	3205											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40745358	40745358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	40745358	T	A	40745358	3	1	47	1	0	0	0	0	1	0	0	0	9040	1490	52	5	6573	5	LRRK2	12	40745358	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	31476	40745358	93106537	103	3206											
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53225246	53225246	+	Silent	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	53225246	C	A	53225246	2	1	47	1	0	0	0	0	0	0	0	1	8499	842	30	4		4	KRT79	12	53225246	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	12479888	53225246	80626649	104	3207											
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56827702	56827703	+	Frame_Shift_Ins	INS	-	-	CACG	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	CACG	56827703	-	CACG	56827702	7	5	47	1	0	1	1	0	0	0	0	0	15916	1792	62	0	3628	0	TIMELESS	12	56827702	Frame_Shift_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	3602456	56827702	77024193	105	3208											
GPR182	11318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57389791	57389791	+	Silent	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	57389791	C	G	57389791	2	3	47	1	0	0	0	0	0	0	0	1	6684	900	32	4		4	GPR182	12	57389791	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	562089	57389791	76462104	106	3209											
KIF5A	3798	broad.mit.edu	37	12	57965901	57965901	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	57965901	C	T	57965901	4	4	47	1	0	0	0	0	0	1	0	0	8312	711	25	2	1474	2	KIF5A	12	57965901	Nonsense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	576110	57965901	75885994	107	3210											
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	126138829	126138830	+	In_Frame_Ins	INS	-	-	CAA	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	CAA	126138830	-	CAA	126138829	7	5	47	1	0	1	1	0	0	0	0	0	16058	1203	42	0	2844	0	TMEM132B	12	126138829	In_Frame_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	68172928	126138829	7713066	108	3211											
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21163994	21163994	+	Silent	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	21163994	T	C	21163994	2	2	47	1	0	0	0	0	0	0	0	1	7573	1509	53	3		3	IFT88	13	21163994	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10		21163994	94005884	109	3212											
USP12	219333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	27664060	27664060	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	27664060	A	T	27664060	3	4	47	1	0	0	0	0	1	0	0	0	17055	362	13	5	434	5	USP12	13	27664060	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	6500066	27664060	87505818	110	3213											
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	60686191	60686191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	60686191	T	C	60686191	3	2	47	1	0	0	0	0	1	0	0	0	4522	1850	64	3	3362	3	DIAPH3	13	60686191	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	33022131	60686191	54483687	111	3214											
SAV1	60485	broad.mit.edu	37	14	51132275	51132275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	51132275	G	A	51132275	3	1	47	1	0	0	0	0	1	0	0	0	13869	1174	41	2	1010	2	SAV1	14	51132275	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10		51132275	56217265	112	3215											
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	39886356	39886356	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	39886356	C	A	39886356	4	1	47	1	0	0	0	0	0	1	0	0	15865	489	17	4	3398	4	THBS1	15	39886356	Nonsense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		39886356	62645036	113	3216											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72190908	72190908	+	Silent	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	72190908	A	G	72190908	2	3	47	1	0	0	0	0	0	0	0	1	10091	175	7	3		3	MYO9A	15	72190908	Silent	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	32304552	72190908	30340484	114	3217											
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74912367	74912371	+	Frame_Shift_Del	DEL	ACCAG	ACCAG	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	ACCAG	ACCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	74912371	ACCAG	-	74912367	7	5	47	1	0	1	0	1	0	0	0	0	3540	391	14	0	624	0	CLK3	15	74912367	Frame_Shift_Del	DEL	ACCAG	TCGA-A4-A48D-01A-11D-A25F-10	2721459	74912367	27619025	115	3218											
NUBP2	10101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1837701	1837701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	1837701	G	T	1837701	3	4	47	1	0	0	0	0	1	0	0	0	10723	1058	37	4	372	4	NUBP2	16	1837701	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10		1837701	88517052	116	3219											
OR1F1	4992	broad.mit.edu	37	16	3254884	3254884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	3254884	G	T	3254884	3	4	47	1	0	0	0	0	1	0	0	0	10963	1319	46	4	640	4	OR1F1	16	3254884	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	1417183	3254884	87099869	117	3220											
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4557884	4557884	+	Silent	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	4557884	G	T	4557884	2	4	47	1	0	0	0	0	0	0	0	1	7251	1306	46	4		4	HMOX2	16	4557884	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	1303000	4557884	85796869	118	3221											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18861438	18861438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	18861438	T	C	18861438	3	2	47	1	0	0	0	0	1	0	0	0	14808	1435	50	3	5807	3	SMG1	16	18861438	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	14303554	18861438	71493315	119	3222											
ACSM2B	348158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20559488	20559488	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	20559488	G	A	20559488	4	1	47	1	0	0	0	0	0	1	0	0	184	1386	48	2	767	2	ACSM2B	16	20559488	Nonsense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	1698050	20559488	69795265	120	3223											
LOC100132247	0	broad.mit.edu	37	16	22545744	22545755	+	In_Frame_Del	DEL	TCCACCCTCAGC	TCCACCCTCAGC	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TCCACCCTCAGC	TCCACCCTCAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	22545755	TCCACCCTCAGC	-	22545744	7	5	47	1	0	1	0	1	0	0	0	0	8875	1770	62	0	1466	0	LOC100132247	16	22545744	In_Frame_Del	DEL	TCCACCCTCAGC	TCGA-A4-A48D-01A-11D-A25F-10	1986256	22545744	67809009	121	3224											
SLC7A6OS	84138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68338097	68338097	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	68338097	C	G	68338097	3	3	47	1	0	0	0	0	1	0	0	0	14715	564	20	4	431	4	SLC7A6OS	16	68338097	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	45792353	68338097	22016656	122	3225											
KLHDC4	54758	broad.mit.edu	37	16	87764193	87764193	+	Silent	SNP	T	T	C	rs191241806		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	87764193	T	C	87764193	2	2	47	1	0	0	0	0	0	0	0	1	8365	1490	52	3		3	KLHDC4	16	87764193	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	19426096	87764193	2590560	123	3226											
BANP	54971	hgsc.bcm.edu	37	16	88105728	88105728	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	88105728	G	A	88105728	2	1	47	1	0	0	0	0	0	0	0	1	1310	1103	39	1		1	BANP	16	88105728	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	341535	88105728	2249025	124	3227											
SMCR8	140775	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18226353	18226353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	18226353	A	T	18226353	3	4	47	1	0	0	0	0	1	0	0	0	14805	275	10	5	2789	5	SMCR8	17	18226353	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		18226353	62968857	125	3228											
AKAP1	8165	broad.mit.edu	37	17	55183277	55183277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	55183277	C	T	55183277	3	4	47	1	0	0	0	0	1	0	0	0	445	855	30	2	454	2	AKAP1	17	55183277	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	36956924	55183277	26011933	126	3229											
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2703754	2703754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	2703754	A	C	2703754	3	2	47	1	0	0	0	0	1	0	0	0	14801	333	12	5	1762	5	SMCHD1	18	2703754	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		2703754	75373494	127	3230											
PIK3C3	5289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	39542509	39542509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	39542509	C	A	39542509	3	1	47	1	0	0	0	0	1	0	0	0	11919	595	21	4	323	4	PIK3C3	18	39542509	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	36838755	39542509	38534739	128	3231											
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8642191	8642191	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	8642191	C	G	8642191	3	3	47	1	0	0	0	0	1	0	0	0	10080	608	21	4	3405	4	MYO1F	19	8642191	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		8642191	50486792	129	3232											
ZNF101	94039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	19790040	19790040	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	-	19790040	A	-	19790040	7	5	47	1	0	1	0	1	0	0	0	0	17726	246	9	0	256	0	ZNF101	19	19790040	Frame_Shift_Del	DEL	A	TCGA-A4-A48D-01A-11D-A25F-10	11147849	19790040	39338943	130	3233											
GAPDHS	26330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36029207	36029207	+	Splice_Site	SNP	A	A	C	rs111871741	alternate_allele	TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	C	36029207	A	C	36029207	5	2	47	1	0	0	0	0	0	0	1	0	6244	202	7	5	254	5	GAPDHS	19	36029207	Splice_Site	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	16239167	36029207	23099776	131	3234											
LRRC4B	94030	bcgsc.ca	37	19	51022541	51022541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	51022541	G	T	51022541	3	4	47	1	0	0	0	0	1	0	0	0	9014	1368	48	4	1716	4	LRRC4B	19	51022541	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	14993334	51022541	8106442	132	3235											
SRC	6714	broad.mit.edu	37	20	36026154	36026154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	36026154	G	T	36026154	3	4	47	1	0	0	0	0	1	0	0	0	15146	962	34	4	778	4	SRC	20	36026154	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10		36026154	26999366	133	3236											
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42310472	42310472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	G	42310472	A	G	42310472	3	3	47	1	0	0	0	0	1	0	0	0	10017	247	9	3	173	3	MYBL2	20	42310472	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	6284318	42310472	20715048	134	3237											
SGSM3	27352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40800334	40800334	+	Silent	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	40800334	C	T	40800334	2	4	47	1	0	0	0	0	0	0	0	1	14237	680	24	2		2	SGSM3	22	40800334	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		40800334	10504232	135	3238											
SGSM3	27352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40802147	40802147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	40802147	C	T	40802147	3	4	47	1	0	0	0	0	1	0	0	0	14237	797	28	2	910	2	SGSM3	22	40802147	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	1813	40802147	10502419	136	3239											
MKL1	57591	broad.mit.edu;bcgsc.ca	37	22	40825749	40825750	+	Missense_Mutation	DNP	GA	GA	AG	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	AG	40825750	GA	AG	40825749	3	1	47	1	0	0	0	0	1	0	0	0	9608	1161	41	2	2669	2	MKL1	22	40825749	Missense_Mutation	DNP	GA	TCGA-A4-A48D-01A-11D-A25F-10	23602	40825749	10478817	137	3240											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44922715	44922716	+	Nonsense_Mutation	DNP	GG	GG	TA	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	TA	44922716	GG	TA	44922715	4	4	47	1	0	0	0	0	0	1	0	0	8144	1348	47	4	1638	4	KDM6A	23	44922715	Nonsense_Mutation	DNP	GG	TCGA-A4-A48D-01A-11D-A25F-10		44922715	110347845	138	3241											
RAB41	347517	bcgsc.ca	37	X	69502407	69502407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	T	69502407	G	T	69502407	3	4	47	1	0	0	0	0	1	0	0	0	12956	1087	38	4	152	4	RAB41	23	69502407	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	24579692	69502407	85768153	139	3242											
IRS4	8471	ucsc.edu	37	X	107977151	107977151	+	Silent	SNP	G	G	A	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	A	107977151	G	A	107977151	2	1	47	1	0	0	0	0	0	0	0	1	7849	1024	36	2		2	IRS4	23	107977151	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	38474744	107977151	47293409	140	3243											
KIAA1751	85452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	1891408	1891409	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	-	1891409	GC	-	1891408	7	5	48	1	0	1	0	1	0	0	0	0	8263	1203	42	0	548	0	KIAA1751	1	1891408	Frame_Shift_Del	DEL	GC	TCGA-A4-A4ZT-01A-11D-A26P-10		1891408	247359213	1	3244											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19524166	19524172	+	Frame_Shift_Del	DEL	ATTACGA	ATTACGA	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	ATTACGA	ATTACGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	-	19524172	ATTACGA	-	19524166	7	5	48	1	0	1	0	1	0	0	0	0	16916	214	8	0	15060	0	UBR4	1	19524166	Frame_Shift_Del	DEL	ATTACGA	TCGA-A4-A4ZT-01A-11D-A26P-10	17632758	19524166	229726455	2	3245											
SPOCD1	90853	hgsc.bcm.edu	37	1	32266188	32266191	+	Frame_Shift_Del	DEL	CCAG	CCAG	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	CCAG	CCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	-	32266191	CCAG	-	32266188	7	5	48	1	0	1	0	1	0	0	0	0	15090	623	22	0	2246	0	SPOCD1	1	32266188	Frame_Shift_Del	DEL	CCAG	TCGA-A4-A4ZT-01A-11D-A26P-10	12742022	32266188	216984433	3	3246											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34052133	34052133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	34052133	T	A	34052133	3	1	48	1	0	0	0	0	1	0	0	0	3947	1580	55	5	3527	5	CSMD2	1	34052133	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	1785945	34052133	215198488	4	3247											
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39878312	39878312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	39878312	C	T	39878312	3	4	48	1	0	0	0	0	1	0	0	0	8199	838	29	2	2377	2	KIAA0754	1	39878312	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	5826179	39878312	209372309	5	3248											
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109265207	109265229	+	Frame_Shift_Del	DEL	GAAAACTGGTATGTAAACAAGAG	GAAAACTGGTATGTAAACAAGAG	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GAAAACTGGTATGTAAACAAGAG	GAAAACTGGTATGTAAACAAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	-	109265229	GAAAACTGGTATGTAAACAAGAG	-	109265207	7	5	48	1	0	1	0	1	0	0	0	0	5980	1277	45	0	867	0	FNDC7	1	109265207	Frame_Shift_Del	DEL	GAAAACTGGTATGTAAACAAGAG	TCGA-A4-A4ZT-01A-11D-A26P-10	69386895	109265207	139985414	6	3249											
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109338856	109338856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	C	109338856	G	C	109338856	3	2	48	1	0	0	0	0	1	0	0	0	15366	1188	41	4	1165	4	STXBP3	1	109338856	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	73649	109338856	139911765	7	3250											
ATP6V1B1	525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	71188132	71188132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	71188132	A	T	71188132	3	4	48	1	0	0	0	0	1	0	0	0	1178	217	8	5	693	5	ATP6V1B1	2	71188132	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		71188132	172011241	8	3251											
CCDC74A	90557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	132290624	132290624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	132290624	A	G	132290624	3	3	48	1	0	0	0	0	1	0	0	0	2849	72	3	3	1015	3	CCDC74A	2	132290624	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	61102492	132290624	110908749	9	3252											
METTL8	79828	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	172195861	172195862	+	Missense_Mutation	DNP	GA	GA	AG	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	AG	172195862	GA	AG	172195861	3	1	48	1	0	0	0	0	1	0	0	0	9514	1174	41	2	812	2	METTL8	2	172195861	Missense_Mutation	DNP	GA	TCGA-A4-A4ZT-01A-11D-A26P-10	39905237	172195861	71003512	10	3253											
PTPRN	5798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220161482	220161482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	220161482	C	T	220161482	3	4	48	1	0	0	0	0	1	0	0	0	12820	768	27	1	672	1	PTPRN	2	220161482	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	47965621	220161482	23037891	11	3254											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225688235	225688235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	225688235	C	T	225688235	3	4	48	1	0	0	0	0	1	0	0	0	4687	536	19	1	3510	1	DOCK10	2	225688235	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	5526753	225688235	17511138	12	3255											
SP140L	93349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231264856	231264856	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	231264856	T	A	231264856	3	1	48	1	0	0	0	0	1	0	0	0	14976	1461	51	5	1270	5	SP140L	2	231264856	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	5576621	231264856	11934517	13	3256											
OXTR	5021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	8809352	8809352	+	Silent	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	8809352	G	T	8809352	2	4	48	1	0	0	0	0	0	0	0	1	11345	932	33	4		4	OXTR	3	8809352	Silent	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		8809352	189213078	14	3257											
FNDC3B	64778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171969140	171969140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	171969140	T	A	171969140	3	1	48	1	0	0	0	0	1	0	0	0	5977	1435	50	5	617	5	FNDC3B	3	171969140	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	163159788	171969140	26053290	15	3258											
PARL	55486	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183558378	183558378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	183558378	A	G	183558378	3	3	48	1	0	0	0	0	1	0	0	0	11458	449	16	3	347	3	PARL	3	183558378	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	11589238	183558378	14464052	16	3259											
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	10099338	10099338	+	Silent	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	10099338	A	G	10099338	2	3	48	1	0	0	0	0	0	0	0	1	17284	126	5	3		3	WDR1	4	10099338	Silent	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		10099338	181054938	17	3260											
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68536260	68536261	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	68536261	-	T	68536260	7	5	48	1	0	1	1	0	0	0	0	0	16844	1049	37	0	2665	0	UBA6	4	68536260	Frame_Shift_Ins	INS	-	TCGA-A4-A4ZT-01A-11D-A26P-10	58436922	68536260	122618016	18	3261	36	2									
UBA6	55236	hgsc.bcm.edu	37	4	68536261	68536261	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	-	68536261	A	-	68536261	7	5	48	1	0	1	0	1	0	0	0	0	16844	246	9	0	2666	0	UBA6	4	68536261	Frame_Shift_Del	DEL	A	TCGA-A4-A4ZT-01A-11D-A26P-10	1	68536261	122618015	19	3262	36	2									
FAM13A	10144	bcgsc.ca	37	4	89772288	89772288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	89772288	A	G	89772288	3	3	48	1	0	0	0	0	1	0	0	0	5456	188	7	3	2286	3	FAM13A	4	89772288	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	21236027	89772288	101381988	20	3263											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114277121	114277121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	114277121	C	A	114277121	3	1	48	1	0	0	0	0	1	0	0	0	621	477	17	4	7562	4	ANK2	4	114277121	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	24504833	114277121	76877155	21	3264											
AHRR	57491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	353963	353963	+	Silent	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	353963	C	T	353963	2	4	48	1	0	0	0	0	0	0	0	1	417	796	28	2		2	AHRR	5	353963	Silent	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10		353963	180561297	22	3265											
LIX1	167410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	96443096	96443096	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	96443096	C	A	96443096	4	1	48	1	0	0	0	0	0	1	0	0	8838	864	30	4	509	4	LIX1	5	96443096	Nonsense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	96089133	96443096	84472164	23	3266											
HIST1H2BN	8341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27806755	27806755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	27806755	G	A	27806755	3	1	48	1	0	0	0	0	1	0	0	0	7160	1175	41	2	318	2	HIST1H2BN	6	27806755	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		27806755	143308312	24	3267											
PPP1R10	5514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30572781	30572781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	30572781	G	A	30572781	3	1	48	1	0	0	0	0	1	0	0	0	12362	1145	40	1	1918	1	PPP1R10	6	30572781	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	2766026	30572781	140542286	25	3268											
UNC5CL	222643	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	40999454	40999454	+	Missense_Mutation	SNP	T	T	A	rs145811250	byfrequency;alternate_allele	TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	40999454	T	A	40999454	3	1	48	1	0	0	0	0	1	0	0	0	17006	1493	52	5	487	5	UNC5CL	6	40999454	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	10426673	40999454	130115613	26	3269											
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5567473	5567473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	5567473	A	G	5567473	3	3	48	1	0	0	0	0	1	0	0	0	193	333	12	3	97	3	ACTB	7	5567473	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		5567473	153571190	27	3270											
AGK	55750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141352597	141352597	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	C	141352597	G	C	141352597	3	2	48	1	0	0	0	0	1	0	0	0	383	1203	42	4	1200	4	AGK	7	141352597	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	135785124	141352597	17786066	28	3271											
ENPP2	5168	bcgsc.ca	37	8	120628549	120628549	+	Silent	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	120628549	G	T	120628549	2	4	48	1	0	0	0	0	0	0	0	1	5132	1095	38	4		4	ENPP2	8	120628549	Silent	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		120628549	25735473	29	3272											
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131735460	131735460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	131735460	A	G	131735460	3	3	48	1	0	0	0	0	1	0	0	0	10765	217	8	3	1181	3	NUP188	9	131735460	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		131735460	9477971	30	3273											
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	43659419	G	T	43659419	3	4	48	1	0	0	0	0	1	0	0	0	3941	1281	45	4	1100	4	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		43659419	91875328	31	3274											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	61832051	61832054	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	-	61832054	TTGT	-	61832051	7	5	48	1	0	1	0	1	0	0	0	0	622	1493	52	0	4886	0	ANK3	10	61832051	Frame_Shift_Del	DEL	TTGT	TCGA-A4-A4ZT-01A-11D-A26P-10	18172632	61832051	73702696	32	3275	37	3									
ANK3	288	hgsc.bcm.edu	37	10	61832052	61832061	+	Frame_Shift_Del	DEL	TGTTAGTGGC	TGTTAGTGGC	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	TGTTAGTGGC	TGTTAGTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	-	61832061	TGTTAGTGGC	-	61832052	7	5	48	1	0	1	0	1	0	0	0	0	622	1812	63	0	4887	0	ANK3	10	61832052	Frame_Shift_Del	DEL	TGTTAGTGGC	TCGA-A4-A4ZT-01A-11D-A26P-10	1	61832052	73702695	33	3276	37	3									
ANK3	288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	61832057	61832061	+	Frame_Shift_Del	DEL	GTGGC	GTGGC	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GTGGC	GTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	-	61832061	GTGGC	-	61832057	7	5	48	1	0	1	0	1	0	0	0	0	622	1029	36	0	4892	0	ANK3	10	61832057	Frame_Shift_Del	DEL	GTGGC	TCGA-A4-A4ZT-01A-11D-A26P-10	5	61832057	73702690	34	3277	37	3									
AIFM2	84883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71874678	71874678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	71874678	G	A	71874678	3	1	48	1	0	0	0	0	1	0	0	0	427	1116	39	1	161	1	AIFM2	10	71874678	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	10042621	71874678	63660069	35	3278											
FERMT3	83706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63990576	63990576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	63990576	G	T	63990576	3	4	48	1	0	0	0	0	1	0	0	0	5826	1087	38	4	1789	4	FERMT3	11	63990576	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		63990576	71015940	36	3279											
SLCO1B3	28234	ucsc.edu	37	12	21030729	21030729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	21030729	A	G	21030729	3	3	48	1	0	0	0	0	1	0	0	0	14737	217	8	3	1024	3	SLCO1B3	12	21030729	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		21030729	112821166	37	3280											
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56814422	56814422	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	56814422	T	G	56814422	3	3	48	1	0	0	0	0	1	0	0	0	15916	1606	56	5	483	5	TIMELESS	12	56814422	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	35783693	56814422	77037473	38	3281											
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85279278	85279278	+	Silent	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	85279278	A	G	85279278	2	3	48	1	0	0	0	0	0	0	0	1	14691	291	11	3		3	SLC6A15	12	85279278	Silent	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	28464856	85279278	48572617	39	3282											
GOLGA3	2802	broad.mit.edu	37	12	133359035	133359035	+	Silent	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	133359035	C	T	133359035	2	4	48	1	0	0	0	0	0	0	0	1	6561	680	24	2		2	GOLGA3	12	133359035	Silent	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	48079757	133359035	492860	40	3283											
TUBGCP3	10426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113140459	113140459	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	113140459	C	G	113140459	3	3	48	1	0	0	0	0	1	0	0	0	16779	536	19	4	155	4	TUBGCP3	13	113140459	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10		113140459	2029419	41	3284											
PRKD1	5587	bcgsc.ca	37	14	30068292	30068292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	30068292	C	T	30068292	3	4	48	1	0	0	0	0	1	0	0	0	12528	536	19	1	647	1	PRKD1	14	30068292	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10		30068292	77281248	42	3285											
LTK	4058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41798200	41798200	+	Silent	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	41798200	G	T	41798200	2	4	48	1	0	0	0	0	0	0	0	1	9087	1219	43	4		4	LTK	15	41798200	Silent	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		41798200	60733192	43	3286											
CHTF18	63922	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	839242	839242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	839242	G	T	839242	3	4	48	1	0	0	0	0	1	0	0	0	3416	1261	44	4	329	4	CHTF18	16	839242	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		839242	89515511	44	3287											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18849889	18849889	+	Silent	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	18849889	A	G	18849889	2	3	48	1	0	0	0	0	0	0	0	1	14808	214	8	3		3	SMG1	16	18849889	Silent	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	18010647	18849889	71504864	45	3288											
CCDC113	29070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58292369	58292370	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	CT	58292370	GG	CT	58292369	3	2	48	1	0	0	0	0	1	0	0	0	2752	1232	43	4	502	4	CCDC113	16	58292369	Missense_Mutation	DNP	GG	TCGA-A4-A4ZT-01A-11D-A26P-10	39442480	58292369	32062384	46	3289											
PRDM7	11105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90127013	90127013	+	Silent	SNP	C	C	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	90127013	C	A	90127013	2	1	48	1	0	0	0	0	0	0	0	1	12471	610	22	4		4	PRDM7	16	90127013	Silent	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	31834644	90127013	227740	47	3290											
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4872081	4872081	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	4872081	T	A	4872081	3	1	48	1	0	0	0	0	1	0	0	0	2616	1609	56	5	83	5	CAMTA2	17	4872081	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10		4872081	76323129	48	3291											
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27958364	27958364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	27958364	C	T	27958364	3	4	48	1	0	0	0	0	1	0	0	0	15197	768	27	1	508	1	SSH2	17	27958364	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	23086283	27958364	53236846	49	3292											
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33772567	33772567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	C	33772567	T	C	33772567	3	2	48	1	0	0	0	0	1	0	0	0	14749	1559	54	3	2576	3	SLFN13	17	33772567	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	5814203	33772567	47422643	50	3293											
LASP1	3927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37070728	37070728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	37070728	G	A	37070728	3	1	48	1	0	0	0	0	1	0	0	0	8644	1246	43	2	526	2	LASP1	17	37070728	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	3298161	37070728	44124482	51	3294											
KRT35	3886	hgsc.bcm.edu	37	17	39633816	39633816	+	Missense_Mutation	SNP	A	A	C	rs200529540		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	C	39633816	A	C	39633816	3	2	48	1	0	0	0	0	1	0	0	0	8479	159	6	5	201	5	KRT35	17	39633816	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	2563088	39633816	41561394	52	3295											
KRT13	3860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39661375	39661375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	39661375	T	A	39661375	3	1	48	1	0	0	0	0	1	0	0	0	8457	1580	55	5	980	5	KRT13	17	39661375	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	27559	39661375	41533835	53	3296											
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45918192	45918192	+	Silent	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	45918192	A	G	45918192	2	3	48	1	0	0	0	0	0	0	0	1	13952	175	7	3		3	SCRN2	17	45918192	Silent	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	6256817	45918192	35277018	54	3297											
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	2130440	2130440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	2130440	G	A	2130440	3	1	48	1	0	0	0	0	1	0	0	0	746	1115	39	1	3160	1	AP3D1	19	2130440	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		2130440	56998543	55	3298											
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12639471	12639471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	12639471	G	T	12639471	3	4	48	1	0	0	0	0	1	0	0	0	18007	1029	36	4	1630	4	ZNF564	19	12639471	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	10509031	12639471	46489512	56	3299											
ZNF493	284443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21606232	21606232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	C	21606232	A	C	21606232	3	2	48	1	0	0	0	0	1	0	0	0	17956	243	9	5	848	5	ZNF493	19	21606232	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	8966761	21606232	37522751	57	3300											
ACSS1	84532	broad.mit.edu;bcgsc.ca	37	20	25028726	25028755	+	In_Frame_Del	DEL	GGTGATCCTCACTTCCGTTCCAGGCTCATC	GGTGATCCTCACTTCCGTTCCAGGCTCATC	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GGTGATCCTCACTTCCGTTCCAGGCTCATC	GGTGATCCTCACTTCCGTTCCAGGCTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	-	25028755	GGTGATCCTCACTTCCGTTCCAGGCTCATC	-	25028726	7	5	48	1	0	1	0	1	0	0	0	0	188	987	35	0	1695	0	ACSS1	20	25028726	In_Frame_Del	DEL	GGTGATCCTCACTTCCGTTCCAGGCTCATC	TCGA-A4-A4ZT-01A-11D-A26P-10		25028726	37996794	58	3301											
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	51871576	51871576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	51871576	G	A	51871576	3	1	48	1	0	0	0	0	1	0	0	0	16636	971	34	2	1585	2	TSHZ2	20	51871576	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	26842850	51871576	11153944	59	3302											
IFNAR1	3454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34725063	34725063	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	A	34725063	G	A	34725063	5	1	48	1	0	0	0	0	0	0	1	0	7551	956	33	2	1177	2	IFNAR1	21	34725063	Splice_Site	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		34725063	13404832	60	3303											
TRIOBP	11078	hgsc.bcm.edu	37	22	38119757	38119757	+	Missense_Mutation	SNP	A	A	T	rs199535040		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	38119757	A	T	38119757	3	4	48	1	0	0	0	0	1	0	0	0	16565	40	2	5	1212	5	TRIOBP	22	38119757	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		38119757	13184809	61	3304											
SMC1B	27127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45748333	45748333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	T	45748333	G	T	45748333	3	4	48	1	0	0	0	0	1	0	0	0	14795	1368	48	4	300	4	SMC1B	22	45748333	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	7628576	45748333	5556233	62	3305											
TIMM17B	10245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48751030	48751031	+	Missense_Mutation	DNP	GC	GC	CT	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	CT	48751031	GC	CT	48751030	3	2	48	1	0	0	0	0	1	0	0	0	15921	962	34	4	21	4	TIMM17B	23	48751030	Missense_Mutation	DNP	GC	TCGA-A4-A4ZT-01A-11D-A26P-10		48751030	106519530	63	3306											
PNMA3	29944	broad.mit.edu	37	X	152226011	152226011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	G	152226011	A	G	152226011	3	3	48	1	0	0	0	0	1	0	0	0	12162	246	9	3	601	3	PNMA3	23	152226011	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	103474981	152226011	3044549	64	3307											
H6PD	9563	hgsc.bcm.edu	37	1	9324338	9324338	+	Missense_Mutation	SNP	G	G	A	rs200978401		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	9324338	G	A	9324338	3	1	49	1	0	0	0	0	1	0	0	0	6943	1145	40	1	1800	1	H6PD	1	9324338	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		9324338	239926283	1	3308											
PRAMEF12	390999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12835789	12835789	+	Nonsense_Mutation	SNP	C	C	T	rs201386508	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	12835789	C	T	12835789	4	4	49	1	0	0	0	0	0	1	0	0	12438	528	19	1	397	1	PRAMEF12	1	12835789	Nonsense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	3511451	12835789	236414832	2	3309											
ARHGEF10L	55160	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17907127	17907127	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	17907127	G	T	17907127	4	4	49	1	0	0	0	0	0	1	0	0	895	1014	35	4	39	4	ARHGEF10L	1	17907127	Nonsense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	5071338	17907127	231343494	3	3310											
MYCL1	4610	hgsc.bcm.edu	37	1	40366677	40366677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	40366677	C	T	40366677	3	4	49	1	0	0	0	0	1	0	0	0	10027	768	27	1	797	1	MYCL1	1	40366677	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	22459550	40366677	208883944	4	3311											
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu	37	1	47905224	47905224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	47905224	G	A	47905224	3	1	49	1	0	0	0	0	1	0	0	0	6004	1116	39	1	1419	1	FOXD2	1	47905224	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	7538547	47905224	201345397	5	3312											
C1orf51	148523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150256865	150256882	+	In_Frame_Del	DEL	ATGGACAGGATCCAGCGT	ATGGACAGGATCCAGCGT	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	ATGGACAGGATCCAGCGT	ATGGACAGGATCCAGCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	150256882	ATGGACAGGATCCAGCGT	-	150256865	7	5	49	1	0	1	0	1	0	0	0	0	2045	101	4	0	482	0	C1orf51	1	150256865	In_Frame_Del	DEL	ATGGACAGGATCCAGCGT	TCGA-A4-A57E-01A-11D-A26P-10	102351641	150256865	98993756	6	3313											
PRUNE	58497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151001408	151001408	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	151001408	A	-	151001408	7	5	49	1	0	1	0	1	0	0	0	0	12650	146	6	0	947	0	PRUNE	1	151001408	Frame_Shift_Del	DEL	A	TCGA-A4-A57E-01A-11D-A26P-10	744543	151001408	98249213	7	3314											
IVL	3713	broad.mit.edu	37	1	152883242	152883242	+	Silent	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	152883242	T	G	152883242	2	3	49	1	0	0	0	0	0	0	0	1	7936	1509	53	5		5	IVL	1	152883242	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	1881834	152883242	96367379	8	3315											
PRDX6	9588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173454563	173454563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	173454563	A	G	173454563	3	3	49	1	0	0	0	0	1	0	0	0	12479	411	15	3	326	3	PRDX6	1	173454563	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	20571321	173454563	75796058	9	3316											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232600607	232600607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	232600607	C	G	232600607	3	3	49	1	0	0	0	0	1	0	0	0	14343	622	22	4	2429	4	SIPA1L2	1	232600607	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	59146044	232600607	16650014	10	3317											
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1241762	1241763	+	Missense_Mutation	DNP	CA	CA	AT	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	AT	1241763	CA	AT	1241762	3	1	49	1	0	0	0	0	1	0	0	0	14888	581	21	4	860	4	SNTG2	2	1241762	Missense_Mutation	DNP	CA	TCGA-A4-A57E-01A-11D-A26P-10		1241762	241957611	11	3318											
IL1A	3552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113540317	113540317	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	113540317	G	T	113540317	2	4	49	1	0	0	0	0	0	0	0	1	7657	1335	47	4		4	IL1A	2	113540317	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	112298555	113540317	129659056	12	3319											
SLC35F5	80255	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	114487016	114487016	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	114487016	A	C	114487016	3	2	49	1	0	0	0	0	1	0	0	0	14605	391	14	5	539	5	SLC35F5	2	114487016	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	946699	114487016	128712357	13	3320											
FAM168B	130074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131812937	131812937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	131812937	G	A	131812937	3	1	49	1	0	0	0	0	1	0	0	0	5490	1000	35	2	212	2	FAM168B	2	131812937	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	17325921	131812937	111386436	14	3321											
CLK1	1195	broad.mit.edu;bcgsc.ca	37	2	201719790	201719790	+	Silent	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	201719790	T	G	201719790	2	3	49	1	0	0	0	0	0	0	0	1	3538	1451	51	5		5	CLK1	2	201719790	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	69906853	201719790	41479583	15	3322											
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204304798	204304798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	204304798	C	G	204304798	3	3	49	1	0	0	0	0	1	0	0	0	13063	603	21	4	641	4	RAPH1	2	204304798	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	2585008	204304798	38894575	16	3323											
ZDBF2	57683	broad.mit.edu	37	2	207169686	207169686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	207169686	A	G	207169686	3	3	49	1	0	0	0	0	1	0	0	0	17611	188	7	3	444	3	ZDBF2	2	207169686	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	2864888	207169686	36029687	17	3324											
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220072714	220072714	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	220072714	C	T	220072714	2	4	49	1	0	0	0	0	0	0	0	1	17640	564	20	2		2	ZFAND2B	2	220072714	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	12903028	220072714	23126659	18	3325											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225422463	225422463	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	225422463	T	G	225422463	3	3	49	1	0	0	0	0	1	0	0	0	4058	1780	62	5	2189	5	CUL3	2	225422463	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	5349749	225422463	17776910	19	3326											
KIF1A	547	hgsc.bcm.edu;bcgsc.ca	37	2	241658528	241658528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	241658528	G	-	241658528	7	5	49	1	0	1	0	1	0	0	0	0	8290	987	35	0	278	0	KIF1A	2	241658528	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	16236065	241658528	1540845	20	3327											
CMTM7	112616	hgsc.bcm.edu	37	3	32433539	32433539	+	Silent	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	32433539	G	C	32433539	2	2	49	1	0	0	0	0	0	0	0	1	3590	1306	46	4		4	CMTM7	3	32433539	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		32433539	165588891	21	3328											
FAIM	55179	ucsc.edu	37	3	138340383	138340383	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	138340383	T	A	138340383	5	1	49	1	0	0	0	0	0	0	1	0	5379	1652	57	5	269	5	FAIM	3	138340383	Splice_Site	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	105906844	138340383	59682047	22	3329											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55570036	55570036	+	Silent	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	55570036	C	G	55570036	2	3	49	1	0	0	0	0	0	0	0	1	8336	813	29	4		4	KIT	4	55570036	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		55570036	135584240	23	3330											
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	73148995	73148995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	73148995	C	T	73148995	3	4	49	1	0	0	0	0	1	0	0	0	267	565	20	2	145	2	ADAMTS3	4	73148995	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	17578959	73148995	118005281	24	3331											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118451949	118451949	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	118451949	A	T	118451949	3	4	49	1	0	0	0	0	1	0	0	0	4596	101	4	5	687	5	DMXL1	5	118451949	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10		118451949	62463311	25	3332											
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141035313	141035313	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	141035313	G	C	141035313	3	2	49	1	0	0	0	0	1	0	0	0	840	1328	46	4	661	4	ARAP3	5	141035313	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	22583364	141035313	39879947	26	3333											
PCDH12	51294	hgsc.bcm.edu;bcgsc.ca	37	5	141334867	141334868	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	141334868	-	A	141334867	7	5	49	1	0	1	1	0	0	0	0	0	11517	1281	45	0	1020	0	PCDH12	5	141334867	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	299554	141334867	39580393	27	3334											
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178567002	178567002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	178567002	G	A	178567002	3	1	49	1	0	0	0	0	1	0	0	0	265	1000	35	2	2019	2	ADAMTS2	5	178567002	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	37232135	178567002	2348258	28	3335											
GCM2	9247	broad.mit.edu	37	6	10877442	10877442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	10877442	T	G	10877442	3	3	49	1	0	0	0	0	1	0	0	0	6305	1696	59	5	1262	5	GCM2	6	10877442	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10		10877442	160237625	29	3336											
ABT1	29777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26597328	26597328	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	26597328	A	T	26597328	4	4	49	1	0	0	0	0	0	1	0	0	101	131	5	5	120	5	ABT1	6	26597328	Nonsense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	15719886	26597328	144517739	30	3337											
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	55925556	55925557	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	55925557	-	A	55925556	7	5	49	1	0	1	1	0	0	0	0	0	3682	710	25	0	499	0	COL21A1	6	55925556	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	29328228	55925556	115189511	31	3338											
ZNF451	26036	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	56966590	56966590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	56966590	C	T	56966590	3	4	49	1	0	0	0	0	1	0	0	0	17934	754	26	2		2	ZNF451	6	56966590	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	1041034	56966590	114148477	32	3339											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	129766960	129766960	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	129766960	C	T	129766960	2	4	49	1	0	0	0	0	0	0	0	1	8613	581	21	2		2	LAMA2	6	129766960	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	72800370	129766960	41348107	33	3340											
TAAR9	134860	broad.mit.edu	37	6	132859485	132859485	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	132859485	C	T	132859485	2	4	49	1	0	0	0	0	0	0	0	1	15506	535	19	1		1	TAAR9	6	132859485	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	3092525	132859485	38255582	34	3341											
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139235873	139235873	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	139235873	G	T	139235873	2	4	49	1	0	0	0	0	0	0	0	1	13241	1219	43	4		4	REPS1	6	139235873	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	6376388	139235873	31879194	35	3342											
MEOX2	4223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	15725867	15725867	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	15725867	G	C	15725867	3	2	49	1	0	0	0	0	1	0	0	0	9481	1232	43	4	765	4	MEOX2	7	15725867	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		15725867	143412796	36	3343											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	18975517	18975517	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	18975517	C	T	18975517	2	4	49	1	0	0	0	0	0	0	0	1	7021	581	21	2		2	HDAC9	7	18975517	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	3249650	18975517	140163146	37	3344											
NEUROD6	63974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31377935	31377935	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	31377935	G	A	31377935	2	1	49	1	0	0	0	0	0	0	0	1	10358	1140	40	1		1	NEUROD6	7	31377935	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	12402418	31377935	127760728	38	3345											
SAMD9L	219285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92764048	92764048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	92764048	A	T	92764048	3	4	49	1	0	0	0	0	1	0	0	0	13840	449	16	5	3521	5	SAMD9L	7	92764048	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	61386113	92764048	66374615	39	3346											
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	92953019	92953019	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	92953019	A	T	92953019	3	4	49	1	0	0	0	0	1	0	0	0	2769	449	16	5	2076	5	CCDC132	7	92953019	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	188971	92953019	66185644	40	3347											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100676808	100676808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	100676808	A	G	100676808	3	3	49	1	0	0	0	0	1	0	0	0	9981	304	11	3	2121	3	MUC17	7	100676808	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	7723789	100676808	58461855	41	3348											
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu	37	7	142606703	142606703	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	142606703	G	A	142606703	2	1	49	1	0	0	0	0	0	0	0	1	16611	1103	39	1		1	TRPV5	7	142606703	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	41929895	142606703	16531960	42	3349											
DCAF13	25879	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	104432588	104432588	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	104432588	A	C	104432588	3	2	49	1	0	0	0	0	1	0	0	0	4268	14	1	5	629	5	DCAF13	8	104432588	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10		104432588	41931434	43	3350											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139707076	139707076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	139707076	C	T	139707076	3	4	49	1	0	0	0	0	1	0	0	0	3683	623	22	2	2373	2	COL22A1	8	139707076	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	35274488	139707076	6656946	44	3351											
TOP1MT	116447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144397926	144397926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	144397926	G	C	144397926	3	2	49	1	0	0	0	0	1	0	0	0	16376	1368	48	4	293	4	TOP1MT	8	144397926	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	4690850	144397926	1966096	45	3352											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	138649177	138649177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	138649177	C	G	138649177	3	3	49	1	0	0	0	0	1	0	0	0	8098	623	22	4	743	4	KCNT1	9	138649177	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		138649177	2564254	46	3353											
GPRIN2	9721	hgsc.bcm.edu	37	10	46999193	46999193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	46999193	G	A	46999193	3	1	49	1	0	0	0	0	1	0	0	0	6737	1290	45	2	315	2	GPRIN2	10	46999193	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		46999193	88535554	47	3354											
JMJD1C	221037	broad.mit.edu	37	10	64973409	64973409	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	64973409	G	-	64973409	7	5	49	1	0	1	0	1	0	0	0	0	7957	1357	47	0	5180	0	JMJD1C	10	64973409	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	17974216	64973409	70561338	48	3355											
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118357347	118357347	+	Silent	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	118357347	T	C	118357347	2	2	49	1	0	0	0	0	0	0	0	1	12157	1432	50	3		3	PNLIPRP1	10	118357347	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	53383938	118357347	17177400	49	3356											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1094686	1094686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	1094686	C	T	1094686	3	4	49	1	0	0	0	0	1	0	0	0	9982	536	19	1	5888	1	MUC2	11	1094686	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		1094686	133911830	50	3357											
MUC5B	727897	broad.mit.edu	37	11	1271547	1271547	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	1271547	A	-	1271547	7	5	49	1	0	1	0	1	0	0	0	0	9986	146	6	0	13568	0	MUC5B	11	1271547	Frame_Shift_Del	DEL	A	TCGA-A4-A57E-01A-11D-A26P-10	176861	1271547	133734969	51	3358											
MRGPRX3	117195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18159591	18159591	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	18159591	G	-	18159591	7	5	49	1	0	1	0	1	0	0	0	0	9775	1145	40	0	844	0	MRGPRX3	11	18159591	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	16888044	18159591	116846925	52	3359											
ABTB2	25841	hgsc.bcm.edu	37	11	34378951	34378951	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	34378951	G	T	34378951	2	4	49	1	0	0	0	0	0	0	0	1	103	1363	47	4		4	ABTB2	11	34378951	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	16219360	34378951	100627565	53	3360											
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	48347236	48347236	+	Silent	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	48347236	C	T	48347236	2	4	49	1	0	0	0	0	0	0	0	1	11057	576	20	2		2	OR4C3	11	48347236	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	13968285	48347236	86659280	54	3361											
RPS6KA4	8986	hgsc.bcm.edu	37	11	64136019	64136019	+	Missense_Mutation	SNP	G	G	A	rs199674030		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	64136019	G	A	64136019	3	1	49	1	0	0	0	0	1	0	0	0	13666	1087	38	1	1322	1	RPS6KA4	11	64136019	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	15788783	64136019	70870497	55	3362											
ALDH3B1	221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67789010	67789010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	67789010	G	T	67789010	3	4	49	1	0	0	0	0	1	0	0	0	499	1377	48	4	640	4	ALDH3B1	11	67789010	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	3652991	67789010	67217506	56	3363											
FGF19	9965	broad.mit.edu	37	11	69514314	69514314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	69514314	C	T	69514314	3	4	49	1	0	0	0	0	1	0	0	0	5854	893	31	1	287	1	FGF19	11	69514314	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	1725304	69514314	65492202	57	3364											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108384826	108384826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	108384826	C	T	108384826	3	4	49	1	0	0	0	0	1	0	0	0	5324	661	23	1	4565	1	EXPH5	11	108384826	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	38870512	108384826	26621690	58	3365											
ABCG4	64137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119027153	119027153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	119027153	G	T	119027153	3	4	49	1	0	0	0	0	1	0	0	0	70	1377	48	4	823	4	ABCG4	11	119027153	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	10642327	119027153	15979363	59	3366											
GAPDH	2597	ucsc.edu	37	12	6645958	6645958	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	6645958	T	C	6645958	5	2	49	1	0	0	0	0	0	0	1	0	6243	1710	59	3	248	3	GAPDH	12	6645958	Splice_Site	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10		6645958	127205937	60	3367											
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	18435382	18435382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	18435382	G	A	18435382	3	1	49	1	0	0	0	0	1	0	0	0	11918	943	33	2	369	2	PIK3C2G	12	18435382	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	11789424	18435382	115416513	61	3368											
PKP2	5318	hgsc.bcm.edu;broad.mit.edu	37	12	33031889	33031889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	33031889	G	A	33031889	3	1	49	1	0	0	0	0	1	0	0	0	11992	1116	39	1	2396	1	PKP2	12	33031889	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	14596507	33031889	100820006	62	3369											
KRT86	3892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52700004	52700004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	52700004	A	G	52700004	3	3	49	1	0	0	0	0	1	0	0	0	8507	72	3	3	1213	3	KRT86	12	52700004	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	19668115	52700004	81151891	63	3370											
CYP27B1	1594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	58158227	58158227	+	Missense_Mutation	SNP	G	G	A	rs142446425	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	58158227	G	A	58158227	3	1	49	1	0	0	0	0	1	0	0	0	4161	1203	42	2	472	2	CYP27B1	12	58158227	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	5458223	58158227	75693668	64	3371											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	64491125	64491125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	64491125	G	C	64491125	3	2	49	1	0	0	0	0	1	0	0	0	15157	1175	41	4	1841	4	SRGAP1	12	64491125	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	6332898	64491125	69360770	65	3372											
TBX5	6910	hgsc.bcm.edu	37	12	114841566	114841566	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	114841566	G	A	114841566	2	1	49	1	0	0	0	0	0	0	0	1	15673	1281	45	2		2	TBX5	12	114841566	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	50350441	114841566	19010329	66	3373											
LRRC43	254050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122669246	122669246	+	Silent	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	122669246	T	C	122669246	2	2	49	1	0	0	0	0	0	0	0	1	9008	1490	52	3		3	LRRC43	12	122669246	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	7827680	122669246	11182649	67	3374											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124335495	124335495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	124335495	G	A	124335495	3	1	49	1	0	0	0	0	1	0	0	0	4600	1116	39	1	5943	1	DNAH10	12	124335495	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	1666249	124335495	9516400	68	3375											
BRI3BP	140707	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125509696	125509696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	125509696	G	T	125509696	3	4	49	1	0	0	0	0	1	0	0	0	1515	1357	47	4	486	4	BRI3BP	12	125509696	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	1174201	125509696	8342199	69	3376											
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	75923415	75923415	+	Silent	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	75923415	C	A	75923415	2	1	49	1	0	0	0	0	0	0	0	1	15634	813	29	4		4	TBC1D4	13	75923415	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		75923415	39246463	70	3377											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20846267	20846267	+	Silent	SNP	G	G	C	rs201698574	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	20846267	G	C	20846267	2	2	49	1	0	0	0	0	0	0	0	1	15771	987	35	4		4	TEP1	14	20846267	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		20846267	86503273	71	3378											
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	63447729	63447729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	63447729	G	A	63447729	3	1	49	1	0	0	0	0	1	0	0	0	8042	1145	40	1	2221	1	KCNH5	14	63447729	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	42601462	63447729	43901811	72	3379											
GALC	2581	hgsc.bcm.edu;broad.mit.edu	37	14	88454869	88454870	+	Splice_Site	INS	-	-	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	88454870	-	A	88454869	8	5	49	1	0	1	1	0	0	0	1	0	6208	1536	53	0	1990	0	GALC	14	88454869	Splice_Site	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	25007140	88454869	18894671	73	3380											
RIN3	79890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	93117951	93117952	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	93117952	-	T	93117951	7	5	49	1	0	1	1	0	0	0	0	0	13386	681	24	0	579	0	RIN3	14	93117951	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	4663082	93117951	14231589	74	3381											
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	101350131	101350136	+	In_Frame_Del	DEL	TCGTTG	TCGTTG	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TCGTTG	TCGTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	101350136	TCGTTG	-	101350131	7	5	49	1	0	1	0	1	0	0	0	0	13737	1551	54	0	3085	0	RTL1	14	101350131	In_Frame_Del	DEL	TCGTTG	TCGA-A4-A57E-01A-11D-A26P-10	8232180	101350131	5999409	75	3382	38	2									
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	101350138	101350138	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	101350138	G	-	101350138	7	5	49	1	0	1	0	1	0	0	0	0	13737	971	34	0	3092	0	RTL1	14	101350138	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	7	101350138	5999402	76	3383	38	2									
ARHGAP11A	9824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	32929467	32929467	+	Silent	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	32929467	T	C	32929467	2	2	49	1	0	0	0	0	0	0	0	1	863	1741	61	3		3	ARHGAP11A	15	32929467	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10		32929467	69601925	77	3384											
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35275620	35275620	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	35275620	T	A	35275620	3	1	49	1	0	0	0	0	1	0	0	0	18155	1812	63	5	2063	5	ZNF770	15	35275620	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	2346153	35275620	67255772	78	3385											
PRTG	283659	broad.mit.edu;bcgsc.ca	37	15	55931987	55931988	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	55931988	-	C	55931987	7	5	49	1	0	1	1	0	0	0	0	0	12648	1696	59	0	1307	0	PRTG	15	55931987	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	20656367	55931987	46599405	79	3386	39	3									
PRTG	283659	ucsc.edu	37	15	55931988	55931988	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	55931988	G	C	55931988	3	2	49	1	0	0	0	0	1	0	0	0	12648	1348	47	4	1308	4	PRTG	15	55931988	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	1	55931988	46599404	80	3387	39	3									
PRTG	283659	hgsc.bcm.edu	37	15	55931991	55931992	+	Frame_Shift_Ins	INS	-	-	TGGTGGG	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	TGGTGGG	55931992	-	TGGTGGG	55931991	7	5	49	1	0	1	1	0	0	0	0	0	12648	1261	44	0	1311	0	PRTG	15	55931991	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	3	55931991	46599401	81	3388	39	3									
DNAH3	55567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21156633	21156633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	21156633	G	A	21156633	3	1	49	1	0	0	0	0	1	0	0	0	4605	1232	43	2	12272	2	DNAH3	16	21156633	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		21156633	69198120	82	3389											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27473632	27473632	+	Missense_Mutation	SNP	C	C	T	rs143019604		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	27473632	C	T	27473632	3	4	49	1	0	0	0	0	1	0	0	0	6879	536	19	1	237	1	GTF3C1	16	27473632	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	6316999	27473632	62881121	83	3390											
ARMC5	79798	hgsc.bcm.edu	37	16	31473812	31473812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	31473812	G	A	31473812	3	1	49	1	0	0	0	0	1	0	0	0	954	1116	39	1	954	1	ARMC5	16	31473812	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	4000180	31473812	58880941	84	3391											
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71779166	71779166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	G	71779166	T	G	71779166	3	3	49	1	0	0	0	0	1	0	0	0	732	1435	50	5	608	5	AP1G1	16	71779166	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	40305354	71779166	18575587	85	3392											
MLKL	197259	bcgsc.ca	37	16	74716659	74716659	+	Silent	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	74716659	G	T	74716659	2	4	49	1	0	0	0	0	0	0	0	1	9626	1277	45	4		4	MLKL	16	74716659	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	2937493	74716659	15638094	86	3393											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1630298	1630298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	1630298	C	T	1630298	3	4	49	1	0	0	0	0	1	0	0	0	17342	855	30	2	2109	2	WDR81	17	1630298	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		1630298	79564912	87	3394											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	G	C	rs28934573	bycluster;alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	7577559	G	C	7577559	3	2	49	1	0	0	0	0	1	0	0	0	16393	1174	41	4	568	4	TP53	17	7577559	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	5947261	7577559	73617651	88	3395											
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27958146	27958146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	27958146	T	C	27958146	3	2	49	1	0	0	0	0	1	0	0	0	15197	1725	60	3	290	3	SSH2	17	27958146	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	20380587	27958146	53237064	89	3396											
SAMD14	201191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48191564	48191565	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	48191565	TG	-	48191564	7	5	49	1	0	1	0	1	0	0	0	0	13832	1580	55	0	336	0	SAMD14	17	48191564	Frame_Shift_Del	DEL	TG	TCGA-A4-A57E-01A-11D-A26P-10	20233418	48191564	33003646	90	3397											
CSHL1	1444	bcgsc.ca	37	17	61988556	61988556	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	61988556	T	A	61988556	3	1	49	1	0	0	0	0	1	0	0	0	3944	1493	52	5	687	5	CSHL1	17	61988556	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	13796992	61988556	19206654	91	3398											
SBNO2	22904	hgsc.bcm.edu	37	19	1132140	1132140	+	Silent	SNP	G	G	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	1132140	G	A	1132140	2	1	49	1	0	0	0	0	0	0	0	1	13876	1103	39	1		1	SBNO2	19	1132140	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		1132140	57996843	92	3399											
REXO1	57455	hgsc.bcm.edu	37	19	1827197	1827197	+	Missense_Mutation	SNP	C	C	T	rs78977406		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	1827197	C	T	1827197	3	4	49	1	0	0	0	0	1	0	0	0	13254	768	27	1	2134	1	REXO1	19	1827197	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	695057	1827197	57301786	93	3400											
TPM4	7171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	16199862	16199862	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	-	16199862	G	-	16199862	7	5	49	1	0	1	0	1	0	0	0	0	16420	1348	47	0	729	0	TPM4	19	16199862	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	14372665	16199862	42929121	94	3401											
YJEFN3	374887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19640278	19640278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	19640278	G	T	19640278	3	4	49	1	0	0	0	0	1	0	0	0	17496	1020	36	4	171	4	YJEFN3	19	19640278	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	3440416	19640278	39488705	95	3402											
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31769063	31769063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	31769063	C	T	31769063	3	4	49	1	0	0	0	0	1	0	0	0	16637	623	22	2	1613	2	TSHZ3	19	31769063	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	12128785	31769063	27359920	96	3403											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39019255	39019255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	39019255	A	T	39019255	3	4	49	1	0	0	0	0	1	0	0	0	13781	217	8	5	11252	5	RYR1	19	39019255	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	7250192	39019255	20109728	97	3404											
MED25	81857	broad.mit.edu	37	19	50333366	50333366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	50333366	G	C	50333366	3	2	49	1	0	0	0	0	1	0	0	0	9450	1203	42	4	736	4	MED25	19	50333366	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	11314111	50333366	8795617	98	3405											
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50918079	50918079	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	50918079	T	A	50918079	3	1	49	1	0	0	0	0	1	0	0	0	12197	1783	62	5	2470	5	POLD1	19	50918079	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	584713	50918079	8210904	99	3406											
ZNF548	147694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57908473	57908473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	T	57908473	C	T	57908473	3	4	49	1	0	0	0	0	1	0	0	0	17992	681	24	2	119	2	ZNF548	19	57908473	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	6990394	57908473	1220510	100	3407											
PAK7	57144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9525075	9525076	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	AT	9525076	CC	AT	9525075	3	1	49	1	0	0	0	0	1	0	0	0	11412	507	18	4	361	4	PAK7	20	9525075	Missense_Mutation	DNP	CC	TCGA-A4-A57E-01A-11D-A26P-10		9525075	53500445	101	3408											
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	36869309	36869309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	36869309	C	A	36869309	3	1	49	1	0	0	0	0	1	0	0	0	8264	912	32	4	2426	4	KIAA1755	20	36869309	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	27344234	36869309	26156211	102	3409											
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42199308	42199308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	42199308	T	C	42199308	3	2	49	1	0	0	0	0	1	0	0	0	14222	1725	60	3	614	3	SGK2	20	42199308	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	5329999	42199308	20826212	103	3410											
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42289163	42289163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	A	42289163	C	A	42289163	3	1	49	1	0	0	0	0	1	0	0	0	15154	710	25	4	2297	4	SREBF2	22	42289163	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		42289163	9015403	104	3411											
MED14	9282	broad.mit.edu	37	X	40586008	40586008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	C	40586008	T	C	40586008	3	2	49	1	0	0	0	0	1	0	0	0	9439	1783	62	3	4142	3	MED14	23	40586008	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10		40586008	114684552	105	3412											
TAS1R1	80835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6639633	6639633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	6639633	G	A	6639633	3	1	50	1	0	0	0	0	1	0	0	0	15574	1116	39	1	2537	1	TAS1R1	1	6639633	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		6639633	242610988	1	3413											
NOTCH2	4853	bcgsc.ca	37	1	120539926	120539926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	C	120539926	G	C	120539926	3	2	50	1	0	0	0	0	1	0	0	0	10555	991	35	4	7094	4	NOTCH2	1	120539926	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	113900293	120539926	128710695	2	3414											
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151785765	151785765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	151785765	G	A	151785765	3	1	50	1	0	0	0	0	1	0	0	0	13543	1145	40	1	448	1	RORC	1	151785765	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	31245839	151785765	97464856	3	3415											
FASLG	356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	172634980	172634980	+	Missense_Mutation	SNP	A	A	G	rs111238176		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	172634980	A	G	172634980	3	3	50	1	0	0	0	0	1	0	0	0	5689	333	12	3	684	3	FASLG	1	172634980	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	20849215	172634980	76615641	4	3416											
SEC16B	89866	broad.mit.edu	37	1	177902408	177902408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	177902408	G	T	177902408	3	4	50	1	0	0	0	0	1	0	0	0	14000	1203	42	4	438	4	SEC16B	1	177902408	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	5267428	177902408	71348213	5	3417											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207112530	207112530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	207112530	A	G	207112530	3	3	50	1	0	0	0	0	1	0	0	0	11904	420	15	3	2008	3	PIGR	1	207112530	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	29210122	207112530	42138091	6	3418											
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220324630	220324630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	220324630	A	G	220324630	3	3	50	1	0	0	0	0	1	0	0	0	12949	101	4	3	40	3	RAB3GAP2	1	220324630	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	13212100	220324630	28925991	7	3419											
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	231931003	231931003	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	-	231931003	A	-	231931003	7	5	50	1	0	1	0	1	0	0	0	0	4540	352	13	0	2049	0	DISC1	1	231931003	Frame_Shift_Del	DEL	A	TCGA-A4-A5DU-01A-11D-A28G-10	11606373	231931003	17319618	8	3420											
GALNT14	79623	broad.mit.edu	37	2	31154974	31154974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	31154974	G	T	31154974	3	4	50	1	0	0	0	0	1	0	0	0	6219	1232	43	4	664	4	GALNT14	2	31154974	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		31154974	212044399	9	3421											
PPM1B	5495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44457731	44457731	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	C	44457731	T	C	44457731	2	2	50	1	0	0	0	0	0	0	0	1	12346	1596	56	3		3	PPM1B	2	44457731	Silent	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10	13302757	44457731	198741642	10	3422											
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	45879246	45879246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	C	45879246	G	C	45879246	3	2	50	1	0	0	0	0	1	0	0	0	12521	1029	36	4	9	4	PRKCE	2	45879246	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	1421515	45879246	197320127	11	3423											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215865727	215865727	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	C	215865727	G	C	215865727	3	2	50	1	0	0	0	0	1	0	0	0	30	1174	41	4	5034	4	ABCA12	2	215865727	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	169986481	215865727	27333646	12	3424											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218713569	218713569	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	218713569	C	G	218713569	3	3	50	1	0	0	0	0	1	0	0	0	16355	825	29	4	3979	4	TNS1	2	218713569	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	2847842	218713569	24485804	13	3425											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52526011	52526011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	52526011	C	T	52526011	3	4	50	1	0	0	0	0	1	0	0	0	10439	594	21	2	4110	2	NISCH	3	52526011	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		52526011	145496419	14	3426											
ZNF721	170960	hgsc.bcm.edu;bcgsc.ca	37	4	436799	436801	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	-	436801	GAG	-	436799	7	5	50	1	0	1	0	1	0	0	0	0	18134	1294	45	0	1318	0	ZNF721	4	436799	In_Frame_Del	DEL	GAG	TCGA-A4-A5DU-01A-11D-A28G-10		436799	190717477	15	3427											
CC2D2A	57545	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	15552558	15552558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	15552558	A	G	15552558	3	3	50	1	0	0	0	0	1	0	0	0	2730	420	15	3	2562	3	CC2D2A	4	15552558	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	15115759	15552558	175601718	16	3428											
DSPP	1834	hgsc.bcm.edu	37	4	88537224	88537232	+	In_Frame_Del	DEL	ACAGCAGCA	ACAGCAGCA	-	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	ACAGCAGCA	ACAGCAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	-	88537232	ACAGCAGCA	-	88537224	7	5	50	1	0	1	0	1	0	0	0	0	4784	275	10	0	3424	0	DSPP	4	88537224	In_Frame_Del	DEL	ACAGCAGCA	TCGA-A4-A5DU-01A-11D-A28G-10	72984666	88537224	102617052	17	3429											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	55237637	55237637	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	55237637	T	A	55237637	3	1	50	1	0	0	0	0	1	0	0	0	7710	1493	52	5	730	5	IL6ST	5	55237637	Missense_Mutation	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10		55237637	125677623	18	3430											
ZNF474	133923	broad.mit.edu	37	5	121487938	121487938	+	Missense_Mutation	SNP	C	C	T	rs143759385	byfrequency;alternate_allele	TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	121487938	C	T	121487938	3	4	50	1	0	0	0	0	1	0	0	0	17944	623	22	2	255	2	ZNF474	5	121487938	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	66250301	121487938	59427322	19	3431											
FHL5	9457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	97051597	97051597	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	97051597	A	G	97051597	2	3	50	1	0	0	0	0	0	0	0	1	5888	436	16	3		3	FHL5	6	97051597	Silent	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10		97051597	74063470	20	3432											
TNRC18	84629	hgsc.bcm.edu	37	7	5372499	5372499	+	Silent	SNP	C	C	T	rs113405524		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	5372499	C	T	5372499	2	4	50	1	0	0	0	0	0	0	0	1	16351	680	24	2		2	TNRC18	7	5372499	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		5372499	153766164	21	3433											
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44796552	44796552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	44796552	G	A	44796552	3	1	50	1	0	0	0	0	1	0	0	0	17709	1232	43	2	182	2	ZMIZ2	7	44796552	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	39424053	44796552	114342111	22	3434											
AUTS2	26053	broad.mit.edu;bcgsc.ca	37	7	70229864	70229864	+	Silent	SNP	C	C	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	70229864	C	G	70229864	2	3	50	1	0	0	0	0	0	0	0	1	1225	610	22	4		4	AUTS2	7	70229864	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	25433312	70229864	88908799	23	3435											
PON2	5445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95040981	95040981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	95040981	G	T	95040981	3	4	50	1	0	0	0	0	1	0	0	0	12256	1377	48	4	606	4	PON2	7	95040981	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	24811117	95040981	64097682	24	3436											
SLC35B4	84912	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	133984905	133984905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	C	133984905	T	C	133984905	3	2	50	1	0	0	0	0	1	0	0	0	14591	1507	52	3	415	3	SLC35B4	7	133984905	Missense_Mutation	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10	38943924	133984905	25153758	25	3437											
PDP1	54704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	94934633	94934633	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	94934633	C	T	94934633	4	4	50	1	0	0	0	0	0	1	0	0	11692	827	29	2	529	2	PDP1	8	94934633	Nonsense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		94934633	51429389	26	3438											
VPS13B	157680	broad.mit.edu	37	8	100729543	100729543	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	100729543	C	G	100729543	3	3	50	1	0	0	0	0	1	0	0	0	17202	594	21	4	7010	4	VPS13B	8	100729543	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	5794910	100729543	45634479	27	3439											
ENPP2	5168	broad.mit.edu;bcgsc.ca	37	8	120580455	120580455	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	120580455	G	A	120580455	2	1	50	1	0	0	0	0	0	0	0	1	5132	1165	41	2		2	ENPP2	8	120580455	Silent	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	19850912	120580455	25783567	28	3440											
NOTCH1	4851	broad.mit.edu	37	9	139417461	139417462	+	Frame_Shift_Ins	INS	-	-	G	rs146350322	by1000genomes;alternate_allele	TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	139417462	-	G	139417461	7	5	50	1	0	1	1	0	0	0	0	0	10554	188	7	0	7208	0	NOTCH1	9	139417461	Frame_Shift_Ins	INS	-	TCGA-A4-A5DU-01A-11D-A28G-10		139417461	1795970	29	3441											
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70670106	70670106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	70670106	C	A	70670106	3	1	50	1	0	0	0	0	1	0	0	0	4370	681	24	4	438	4	DDX50	10	70670106	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		70670106	64864641	30	3442											
SLC5A12	159963	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26720060	26720060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	26720060	C	A	26720060	3	1	50	1	0	0	0	0	1	0	0	0	14677	623	22	4	1048	4	SLC5A12	11	26720060	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		26720060	108286456	31	3443											
INCENP	3619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61897408	61897408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	61897408	G	A	61897408	3	1	50	1	0	0	0	0	1	0	0	0	7740	1203	42	2	419	2	INCENP	11	61897408	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	35177348	61897408	73109108	32	3444											
PDE2A	5138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72293520	72293520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	72293520	G	T	72293520	3	4	50	1	0	0	0	0	1	0	0	0	11643	1232	43	4	1050	4	PDE2A	11	72293520	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	10396112	72293520	62712996	33	3445											
SSPN	8082	hgsc.bcm.edu	37	12	26348668	26348668	+	Silent	SNP	C	C	G	rs200655450		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	26348668	C	G	26348668	2	3	50	1	0	0	0	0	0	0	0	1	15200	639	23	4		4	SSPN	12	26348668	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		26348668	107503227	34	3446											
SLC25A3	5250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	98995295	98995295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	98995295	T	A	98995295	3	1	50	1	0	0	0	0	1	0	0	0	14506	1722	60	5	1230	5	SLC25A3	12	98995295	Missense_Mutation	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10	72646627	98995295	34856600	35	3447											
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21793036	21793036	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	21793036	C	T	21793036	2	4	50	1	0	0	0	0	0	0	0	1	13562	610	22	2		2	RPGRIP1	14	21793036	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		21793036	85556504	36	3448											
POMT2	29954	broad.mit.edu;bcgsc.ca	37	14	77769260	77769260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	77769260	A	G	77769260	3	3	50	1	0	0	0	0	1	0	0	0	12253	391	14	3	1746	3	POMT2	14	77769260	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	55976224	77769260	29580280	37	3449											
FAM98B	283742	hgsc.bcm.edu	37	15	38776827	38776827	+	Silent	SNP	T	T	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	38776827	T	A	38776827	2	1	50	1	0	0	0	0	0	0	0	1	5664	1683	59	5		5	FAM98B	15	38776827	Silent	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10		38776827	63754565	38	3450											
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	81181040	81181040	+	Splice_Site	SNP	A	A	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	81181040	A	T	81181040	5	4	50	1	0	0	0	0	0	0	1	0	8220	202	7	5	893	5	KIAA1199	15	81181040	Splice_Site	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	42404213	81181040	21350352	39	3451											
SETD6	79918	broad.mit.edu	37	16	58549753	58549753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	58549753	G	T	58549753	3	4	50	1	0	0	0	0	1	0	0	0	14148	1319	46	4	92	4	SETD6	16	58549753	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		58549753	31805000	40	3452											
GLTPD2	388323	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4693110	4693110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	G	4693110	A	G	4693110	3	3	50	1	0	0	0	0	1	0	0	0	6480	72	3	3	409	3	GLTPD2	17	4693110	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10		4693110	76502100	41	3453											
KDM6B	23135	broad.mit.edu	37	17	7751756	7751756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	7751756	C	T	7751756	3	4	50	1	0	0	0	0	1	0	0	0	8145	710	25	2	2180	2	KDM6B	17	7751756	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	3058646	7751756	73443454	42	3454											
TRIM25	7706	bcgsc.ca	37	17	54990934	54990934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	54990934	G	A	54990934	3	1	50	1	0	0	0	0	1	0	0	0	16511	1203	42	2	1512	2	TRIM25	17	54990934	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	47239178	54990934	26204276	43	3455											
SETBP1	26040	broad.mit.edu	37	18	42281356	42281356	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	42281356	C	T	42281356	2	4	50	1	0	0	0	0	0	0	0	1	14142	755	27	1		1	SETBP1	18	42281356	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		42281356	35795892	44	3456											
CDC37	11140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10506875	10506875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	10506875	C	T	10506875	3	4	50	1	0	0	0	0	1	0	0	0	3070	652	23	1	1057	1	CDC37	19	10506875	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		10506875	48622108	45	3457											
GATA5	140628	hgsc.bcm.edu	37	20	61050059	61050059	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	61050059	G	T	61050059	2	4	50	1	0	0	0	0	0	0	0	1	6264	987	35	4		4	GATA5	20	61050059	Silent	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		61050059	1975461	46	3458											
COL20A1	57642	broad.mit.edu	37	20	61945126	61945126	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	T	61945126	G	T	61945126	2	4	50	1	0	0	0	0	0	0	0	1	3681	1335	47	4		4	COL20A1	20	61945126	Silent	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	895067	61945126	1080394	47	3459											
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	A	29885562	G	A	29885562	3	1	50	1	0	0	0	0	1	0	0	0	10321	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		29885562	21419004	48	3460											
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41911896	41911896	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	C	41911896	T	C	41911896	2	2	50	1	0	0	0	0	0	0	0	1	147	1567	55	3		3	ACO2	22	41911896	Silent	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10	12026334	41911896	9392670	49	3461											
BRCC3	79184	broad.mit.edu;bcgsc.ca	37	X	154299904	154299904	+	Silent	SNP	A	A	C	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	C	154299904	A	C	154299904	2	2	50	1	0	0	0	0	0	0	0	1	1502	349	13	5		5	BRCC3	23	154299904	Silent	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10		154299904	970656	50	3462											
PRKCZ	5590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2066777	2066777	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	2066777	C	T	2066777	2	4	51	1	0	0	0	0	0	0	0	1	12527	784	28	2		2	PRKCZ	1	2066777	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10		2066777	247183844	1	3463											
CAP1	10487	bcgsc.ca	37	1	40535490	40535491	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	G	40535491	-	G	40535490	7	5	51	1	0	1	1	0	0	0	0	0	2621	528	19	0	967	0	CAP1	1	40535490	Frame_Shift_Ins	INS	-	TCGA-A4-A5XZ-01A-11D-A31X-10	38468713	40535490	208715131	2	3464											
LRRC8C	84230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90180077	90180077	+	Missense_Mutation	SNP	A	A	G	rs113075842		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	G	90180077	A	G	90180077	3	3	51	1	0	0	0	0	1	0	0	0	9030	159	6	3	1954	3	LRRC8C	1	90180077	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	49644587	90180077	159070544	3	3465											
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	91403569	91403569	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	91403569	G	T	91403569	4	4	51	1	0	0	0	0	0	1	0	0	18072	1294	45	4	834	4	ZNF644	1	91403569	Nonsense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	1223492	91403569	157847052	4	3466											
ADORA3	140	broad.mit.edu	37	1	112026372	112026372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	112026372	G	T	112026372	3	4	51	1	0	0	0	0	1	0	0	0	329	1368	48	4	66	4	ADORA3	1	112026372	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	20622803	112026372	137224249	5	3467											
ZC3H11A	9877	hgsc.bcm.edu	37	1	203787783	203787786	+	Frame_Shift_Del	DEL	GACA	GACA	-	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	GACA	GACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	-	203787786	GACA	-	203787783	7	5	51	1	0	1	0	1	0	0	0	0	17572	1058	37	0	146	0	ZC3H11A	1	203787783	Frame_Shift_Del	DEL	GACA	TCGA-A4-A5XZ-01A-11D-A31X-10	91761411	203787783	45462838	6	3468											
SUSD4	55061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223536686	223536686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	223536686	T	C	223536686	3	2	51	1	0	0	0	0	1	0	0	0	15422	1559	54	3	1575	3	SUSD4	1	223536686	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	19748903	223536686	25713935	7	3469											
SNAP47	116841	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	227935595	227935595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	227935595	T	A	227935595	3	1	51	1	0	0	0	0	1	0	0	0	14845	1406	49	5	299	5	SNAP47	1	227935595	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	4398909	227935595	21315026	8	3470											
FAM98A	25940	broad.mit.edu	37	2	33810281	33810281	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	33810281	T	C	33810281	2	2	51	1	0	0	0	0	0	0	0	1	5663	1538	54	3		3	FAM98A	2	33810281	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10		33810281	209389092	9	3471											
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	71036918	71036918	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	71036918	G	A	71036918	2	1	51	1	0	0	0	0	0	0	0	1	3518	987	35	2		2	CLEC4F	2	71036918	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	37226637	71036918	172162455	10	3472											
RMND5A	64795	broad.mit.edu;bcgsc.ca	37	2	86947925	86947925	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	86947925	G	A	86947925	2	1	51	1	0	0	0	0	0	0	0	1	13410	933	33	2		2	RMND5A	2	86947925	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	15911007	86947925	156251448	11	3473											
SCN3A	6328	ucsc.edu;bcgsc.ca	37	2	165948982	165948982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	G	165948982	A	G	165948982	3	3	51	1	0	0	0	0	1	0	0	0	13931	333	12	3	1421	3	SCN3A	2	165948982	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	79001057	165948982	77250391	12	3474											
SCN1A	6323	ucsc.edu;bcgsc.ca	37	2	166892799	166892799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	166892799	G	A	166892799	3	1	51	1	0	0	0	0	1	0	0	0	13927	1174	41	2	2885	2	SCN1A	2	166892799	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	943817	166892799	76306574	13	3475											
SPEG	10290	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220342479	220342479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	220342479	T	C	220342479	3	2	51	1	0	0	0	0	1	0	0	0	15048	1609	56	3	4892	3	SPEG	2	220342479	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	53449680	220342479	22856894	14	3476											
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	241696843	C	A	241696843	3	1	51	1	0	0	0	0	1	0	0	0	8290	696	24	4		4	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	21354364	241696843	1502530	15	3477											
PASK	23178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242082279	242082279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	242082279	G	T	242082279	3	4	51	1	0	0	0	0	1	0	0	0	11479	1029	36	4	3870	4	PASK	2	242082279	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	385436	242082279	1117094	16	3478											
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242196033	242196033	+	Silent	SNP	T	T	C	rs200251201		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	242196033	T	C	242196033	2	2	51	1	0	0	0	0	0	0	0	1	7032	1635	57	3		3	HDLBP	2	242196033	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	113754	242196033	1003340	17	3479											
CELSR3	1951	bcgsc.ca	37	3	48692763	48692763	+	Silent	SNP	T	T	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	48692763	T	A	48692763	2	1	51	1	0	0	0	0	0	0	0	1	3225	1567	55	5		5	CELSR3	3	48692763	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10		48692763	149329667	18	3480											
BSN	8927	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49689059	49689059	+	Silent	SNP	C	C	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	49689059	C	A	49689059	2	1	51	1	0	0	0	0	0	0	0	1	1532	903	32	4		4	BSN	3	49689059	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	996296	49689059	148333371	19	3481											
ACOX2	8309	hgsc.bcm.edu;bcgsc.ca	37	3	58519841	58519842	+	Frame_Shift_Ins	INS	-	-	TATATTT	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	TATATTT	58519842	-	TATATTT	58519841	7	5	51	1	0	1	1	0	0	0	0	0	159	1377	48	0	1738	0	ACOX2	3	58519841	Frame_Shift_Ins	INS	-	TCGA-A4-A5XZ-01A-11D-A31X-10	8830782	58519841	139502589	20	3482											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	85851274	85851274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	85851274	G	C	85851274	3	2	51	1	0	0	0	0	1	0	0	0	2569	1290	45	4	216	4	CADM2	3	85851274	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	27331433	85851274	112171156	21	3483											
PROS1	5627	broad.mit.edu	37	3	93646100	93646100	+	Silent	SNP	C	C	T	rs6121	by1000genomes;alternate_allele	TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	93646100	C	T	93646100	2	4	51	1	0	0	0	0	0	0	0	1	12568	639	23	1		1	PROS1	3	93646100	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	7794826	93646100	104376330	22	3484											
ALDH1L1	10840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	125826081	125826081	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	125826081	A	C	125826081	3	2	51	1	0	0	0	0	1	0	0	0	494	72	3	5	364	5	ALDH1L1	3	125826081	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	32179981	125826081	72196349	23	3485											
PRKCI	5584	bcgsc.ca	37	3	170002334	170002334	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	170002334	T	C	170002334	2	2	51	1	0	0	0	0	0	0	0	1	12524	1490	52	3		3	PRKCI	3	170002334	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	44176253	170002334	28020096	24	3486											
HTT	3064	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3230734	3230734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	3230734	T	C	3230734	3	2	51	1	0	0	0	0	1	0	0	0	7464	1435	50	3	8341	3	HTT	4	3230734	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10		3230734	187923542	25	3487											
DDX60L	91351	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	169382991	169382991	+	Silent	SNP	C	C	T	rs17612630	byfrequency;alternate_allele	TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	169382991	C	T	169382991	2	4	51	1	0	0	0	0	0	0	0	1	4381	523	19	1		1	DDX60L	4	169382991	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	166152257	169382991	21771285	26	3488											
SLC12A7	10723	broad.mit.edu	37	5	1087140	1087140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	1087140	A	C	1087140	3	2	51	1	0	0	0	0	1	0	0	0	14401	275	10	5	2774	5	SLC12A7	5	1087140	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		1087140	179828120	27	3489											
LIFR	3977	bcgsc.ca	37	5	38506175	38506175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	38506175	A	C	38506175	3	2	51	1	0	0	0	0	1	0	0	0	8787	28	1	5	2218	5	LIFR	5	38506175	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	37419035	38506175	142409085	28	3490											
IK	3550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140034136	140034136	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	140034136	A	C	140034136	3	2	51	1	0	0	0	0	1	0	0	0	7615	69	3	5	581	5	IK	5	140034136	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	101527961	140034136	40881124	29	3491											
PCDHA12	56137	broad.mit.edu	37	5	140256291	140256291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	140256291	G	A	140256291	3	1	51	1	0	0	0	0	1	0	0	0	11529	1087	38	1	1236	1	PCDHA12	5	140256291	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	222155	140256291	40658969	30	3492											
PCDHGA11	56105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140800833	140800833	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	140800833	G	A	140800833	2	1	51	1	0	0	0	0	0	0	0	1	11559	1306	46	2		2	PCDHGA11	5	140800833	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	544542	140800833	40114427	31	3493											
CDKAL1	54901	broad.mit.edu;bcgsc.ca	37	6	20739778	20739778	+	Missense_Mutation	SNP	G	G	C	rs139954896	alternate_allele	TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	20739778	G	C	20739778	3	2	51	1	0	0	0	0	1	0	0	0	3154	1145	40	4	414	4	CDKAL1	6	20739778	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		20739778	150375289	32	3494											
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41059422	41059422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	41059422	G	A	41059422	3	1	51	1	0	0	0	0	1	0	0	0	10396	1000	35	2	725	2	NFYA	6	41059422	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	20319644	41059422	130055645	33	3495											
YIPF3	25844	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43483379	43483379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	-	43483379	T	-	43483379	7	5	51	1	0	1	0	1	0	0	0	0	17491	1464	51	0	731	0	YIPF3	6	43483379	Frame_Shift_Del	DEL	T	TCGA-A4-A5XZ-01A-11D-A31X-10	2423957	43483379	127631688	34	3496											
FTSJ2	29960	bcgsc.ca	37	7	2275155	2275155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	2275155	G	T	2275155	3	4	51	1	0	0	0	0	1	0	0	0	6095	1290	45	4	401	4	FTSJ2	7	2275155	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		2275155	156863508	35	3497											
NOD1	10392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	30492406	30492406	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	30492406	G	A	30492406	2	1	51	1	0	0	0	0	0	0	0	1	10523	1335	47	2		2	NOD1	7	30492406	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	28217251	30492406	128646257	36	3498											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	44747231	44747232	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	44747232	-	A	44747231	7	5	51	1	0	1	1	0	0	0	0	0	10846	581	21	0	3102	0	OGDH	7	44747231	Frame_Shift_Ins	INS	-	TCGA-A4-A5XZ-01A-11D-A31X-10	14254825	44747231	114391432	37	3499											
ZNF273	10793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	64388953	64388953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	G	64388953	C	G	64388953	3	3	51	1	0	0	0	0	1	0	0	0	17820	565	20	4	1261	4	ZNF273	7	64388953	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	19641722	64388953	94749710	38	3500											
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87049331	87049331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	87049331	T	C	87049331	3	2	51	1	0	0	0	0	1	0	0	0	43	1763	61	3	1523	3	ABCB4	7	87049331	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	22660378	87049331	72089332	39	3501											
GIGYF1	64599	bcgsc.ca	37	7	100279776	100279776	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	100279776	C	T	100279776	2	4	51	1	0	0	0	0	0	0	0	1	6384	755	27	1		1	GIGYF1	7	100279776	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	13230445	100279776	58858887	40	3502											
SRRT	51593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100485329	100485329	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	100485329	T	C	100485329	2	2	51	1	0	0	0	0	0	0	0	1	15184	1567	55	3		3	SRRT	7	100485329	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	205553	100485329	58653334	41	3503											
PPP2CB	5516	bcgsc.ca	37	8	30651447	30651447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	30651447	G	C	30651447	3	2	51	1	0	0	0	0	1	0	0	0	12391	1357	47	4	217	4	PPP2CB	8	30651447	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		30651447	115712575	42	3504											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48809814	48809814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	G	48809814	C	G	48809814	3	3	51	1	0	0	0	0	1	0	0	0	12531	507	18	4	9108	4	PRKDC	8	48809814	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	18158367	48809814	97554208	43	3505											
ST18	9705	broad.mit.edu	37	8	53077753	53077753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	53077753	G	T	53077753	3	4	51	1	0	0	0	0	1	0	0	0	15224	1174	41	4	1966	4	ST18	8	53077753	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	4267939	53077753	93286269	44	3506											
RB1CC1	9821	bcgsc.ca	37	8	53569322	53569322	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	53569322	G	A	53569322	4	1	51	1	0	0	0	0	0	1	0	0	13112	1386	48	2	1757	2	RB1CC1	8	53569322	Nonsense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	491569	53569322	92794700	45	3507											
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	49659052	49659052	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	G	49659052	C	G	49659052	3	3	51	1	0	0	0	0	1	0	0	0	872	864	30	4	984	4	ARHGAP22	10	49659052	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10		49659052	85875695	46	3508											
DNA2	1763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70209856	70209856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	70209856	T	C	70209856	3	2	51	1	0	0	0	0	1	0	0	0	4598	1725	60	3	2378	3	DNA2	10	70209856	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	20550804	70209856	65324891	47	3509											
ZNF408	79797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46726233	46726233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	46726233	A	C	46726233	3	2	51	1	0	0	0	0	1	0	0	0	17900	188	7	5	1033	5	ZNF408	11	46726233	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		46726233	88280283	48	3510											
PPP1CA	5499	ucsc.edu;bcgsc.ca	37	11	67168351	67168351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	67168351	A	C	67168351	3	2	51	1	0	0	0	0	1	0	0	0	12359	14	1	5	785	5	PPP1CA	11	67168351	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	20442118	67168351	67838165	49	3511											
CAPN5	726	broad.mit.edu	37	11	76823693	76823693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	76823693	G	A	76823693	3	1	51	1	0	0	0	0	1	0	0	0	2631	1203	42	2	366	2	CAPN5	11	76823693	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	9655342	76823693	58182823	50	3512											
MAML2	84441	broad.mit.edu	37	11	95825221	95825221	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	95825221	C	T	95825221	2	4	51	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825221	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	19001528	95825221	39181295	51	3513											
GRIA4	2893	bcgsc.ca	37	11	105623882	105623882	+	Silent	SNP	A	A	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	105623882	A	T	105623882	2	4	51	1	0	0	0	0	0	0	0	1	6777	146	6	5		5	GRIA4	11	105623882	Silent	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	9798661	105623882	29382634	52	3514											
DDN	23109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49390815	49390815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	49390815	A	T	49390815	3	4	51	1	0	0	0	0	1	0	0	0	4335	159	6	5	295	5	DDN	12	49390815	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		49390815	84461080	53	3515											
LRIG3	121227	broad.mit.edu	37	12	59274493	59274493	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	59274493	G	A	59274493	2	1	51	1	0	0	0	0	0	0	0	1	8953	1074	38	1		1	LRIG3	12	59274493	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	9883678	59274493	74577402	54	3516											
LYZ	4069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	69743944	69743944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	69743944	G	T	69743944	3	4	51	1	0	0	0	0	1	0	0	0	9137	1319	46	4	199	4	LYZ	12	69743944	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	10469451	69743944	64107951	55	3517											
ATP2B1	490	hgsc.bcm.edu;bcgsc.ca	37	12	89992987	89992988	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	AA	89992988	-	AA	89992987	7	5	51	1	0	1	1	0	0	0	0	0	1139	1519	53	0	570	0	ATP2B1	12	89992987	Frame_Shift_Ins	INS	-	TCGA-A4-A5XZ-01A-11D-A31X-10	20249043	89992987	43858908	56	3518											
THSD1	55901	hgsc.bcm.edu;bcgsc.ca	37	13	52971551	52971551	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	-	52971551	G	-	52971551	7	5	51	1	0	1	0	1	0	0	0	0	15889	1335	47	0	1733	0	THSD1	13	52971551	Frame_Shift_Del	DEL	G	TCGA-A4-A5XZ-01A-11D-A31X-10		52971551	62198327	57	3519											
ZIC2	7546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	100635322	100635322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	100635322	G	A	100635322	3	1	51	1	0	0	0	0	1	0	0	0	17691	1319	46	2	1006	2	ZIC2	13	100635322	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	47663771	100635322	14534556	58	3520											
SCFD1	23256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31175075	31175075	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	31175075	A	T	31175075	3	4	51	1	0	0	0	0	1	0	0	0	13902	391	14	5	1607	5	SCFD1	14	31175075	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		31175075	76174465	59	3521											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68252617	68252617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	68252617	C	T	68252617	3	4	51	1	0	0	0	0	1	0	0	0	17680	913	32	2	4457	2	ZFYVE26	14	68252617	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	37077542	68252617	39096923	60	3522											
EXD2	55218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69697234	69697234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	69697234	G	C	69697234	3	2	51	1	0	0	0	0	1	0	0	0	5300	933	33	4	267	4	EXD2	14	69697234	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	1444617	69697234	37652306	61	3523											
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70989617	70989617	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	70989617	A	C	70989617	3	2	51	1	0	0	0	0	1	0	0	0	242	188	7	5	326	5	ADAM20	14	70989617	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	1292383	70989617	36359923	62	3524											
BCL2L10	10017	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	52404725	52404725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	52404725	A	T	52404725	3	4	51	1	0	0	0	0	1	0	0	0	1368	420	15	5	423	5	BCL2L10	15	52404725	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		52404725	50126667	63	3525											
ULK3	25989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75132623	75132623	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	75132623	C	T	75132623	2	4	51	1	0	0	0	0	0	0	0	1	16989	506	18	2		2	ULK3	15	75132623	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	22727898	75132623	27398769	64	3526											
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3063765	3063765	+	Silent	SNP	C	C	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	3063765	C	A	3063765	2	1	51	1	0	0	0	0	0	0	0	1	3494	845	30	4		4	CLDN9	16	3063765	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10		3063765	87290988	65	3527											
FOXN1	8456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	26851949	26851949	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	-	26851949	C	-	26851949	7	5	51	1	0	1	0	1	0	0	0	0	6026	842	30	0	558	0	FOXN1	17	26851949	Frame_Shift_Del	DEL	C	TCGA-A4-A5XZ-01A-11D-A31X-10		26851949	54343261	66	3528											
RPL19	6143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37358657	37358657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	37358657	C	T	37358657	3	4	51	1	0	0	0	0	1	0	0	0	13579	507	18	2	210	2	RPL19	17	37358657	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	10506708	37358657	43836553	67	3529											
KRT35	3886	bcgsc.ca	37	17	39636925	39636925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	39636925	G	T	39636925	3	4	51	1	0	0	0	0	1	0	0	0	8479	1000	35	4	970	4	KRT35	17	39636925	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	2278268	39636925	41558285	68	3530											
TOB1	10140	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48941072	48941072	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	48941072	T	A	48941072	3	1	51	1	0	0	0	0	1	0	0	0	16359	1493	52	5	734	5	TOB1	17	48941072	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	9304147	48941072	32254138	69	3531											
DDX5	1655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62496852	62496852	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	62496852	G	C	62496852	3	2	51	1	0	0	0	0	1	0	0	0	4369	1000	35	4	596	4	DDX5	17	62496852	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	13555780	62496852	18698358	70	3532											
MGAT5B	146664	broad.mit.edu	37	17	74944059	74944059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	74944059	G	T	74944059	3	4	51	1	0	0	0	0	1	0	0	0	9556	1203	42	4	2228	4	MGAT5B	17	74944059	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	12447207	74944059	6251151	71	3533											
DNAH17	8632	bcgsc.ca	37	17	76565539	76565539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	76565539	C	T	76565539	3	4	51	1	0	0	0	0	1	0	0	0	4603	739	26	2	12569	2	DNAH17	17	76565539	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	1621480	76565539	4629671	72	3534											
RAB31	11031	broad.mit.edu	37	18	9815181	9815181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	9815181	G	T	9815181	3	4	51	1	0	0	0	0	1	0	0	0	12933	1348	47	4	360	4	RAB31	18	9815181	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		9815181	68262067	73	3535											
POLRMT	5442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	623528	623528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	623528	T	C	623528	3	2	51	1	0	0	0	0	1	0	0	0	12245	1464	51	3	2540	3	POLRMT	19	623528	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10		623528	58505455	74	3536											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610566	10610566	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	10610566	G	T	10610566	2	4	51	1	0	0	0	0	0	0	0	1	8148	1306	46	4		4	KEAP1	19	10610566	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	9987038	10610566	48518417	75	3537											
RFX1	5989	broad.mit.edu;ucsc.edu	37	19	14080923	14080923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	C	14080923	T	C	14080923	3	2	51	1	0	0	0	0	1	0	0	0	13275	1638	57	3	1608	3	RFX1	19	14080923	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	3470357	14080923	45048060	76	3538											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36229181	36229181	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	G	36229181	A	G	36229181	5	3	51	1	0	0	0	0	0	0	1	0	9630	202	7	3	8017	3	MLL4	19	36229181	Splice_Site	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	22148258	36229181	22899802	77	3539											
CEACAM16	388551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45211204	45211204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	45211204	G	A	45211204	3	1	51	1	0	0	0	0	1	0	0	0	3190	1145	40	1	1030	1	CEACAM16	19	45211204	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	8982023	45211204	13917779	78	3540											
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61467549	61467549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	61467549	G	T	61467549	3	4	51	1	0	0	0	0	1	0	0	0	3711	1058	37	4	1522	4	COL9A3	20	61467549	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		61467549	1557971	79	3541											
GABPA	2551	bcgsc.ca	37	21	27130324	27130324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	A	27130324	C	A	27130324	3	1	51	1	0	0	0	0	1	0	0	0	6164	623	22	4	575	4	GABPA	21	27130324	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10		27130324	20999571	80	3542											
DIP2A	23181	bcgsc.ca	37	21	47961748	47961748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	T	47961748	G	T	47961748	3	4	51	1	0	0	0	0	1	0	0	0	4529	1174	41	4	2186	4	DIP2A	21	47961748	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	20831424	47961748	168147	81	3543											
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	39932148	39932148	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	G	39932148	A	G	39932148	2	3	51	1	0	0	0	0	0	0	0	1	1386	175	7	3		3	BCOR	23	39932148	Silent	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		39932148	115338412	82	3544											
H6PD	9563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9305536	9305536	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	9305536	C	T	9305536	2	4	52	1	0	0	0	0	0	0	0	1	6943	912	32	2		2	H6PD	1	9305536	Silent	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		9305536	239945085	1	3545											
KANK4	163782	bcgsc.ca	37	1	62740357	62740357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	62740357	A	-	62740357	7	5	52	1	0	1	0	1	0	0	0	0	7986	131	5	0	2600	0	KANK4	1	62740357	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	53434821	62740357	186510264	2	3546	40	2									
KANK4	163782	bcgsc.ca	37	1	62740358	62740358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	62740358	A	T	62740358	3	4	52	1	0	0	0	0	1	0	0	0	7986	40	2	5	2601	5	KANK4	1	62740358	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	1	62740358	186510263	3	3547	40	2									
RABGGTB	5876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	76253203	76253203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	76253203	A	G	76253203	3	3	52	1	0	0	0	0	1	0	0	0	12981	449	16	3	31	3	RABGGTB	1	76253203	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	13512845	76253203	172997418	4	3548											
OVGP1	5016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111957940	111957940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	111957940	A	C	111957940	3	2	52	1	0	0	0	0	1	0	0	0	11332	101	4	5	857	5	OVGP1	1	111957940	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	35704737	111957940	137292681	5	3549											
NOTCH2	4853	bcgsc.ca	37	1	120506375	120506375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	120506375	G	T	120506375	4	4	52	1	0	0	0	0	0	1	0	0	10555	1195	42	4	5774	4	NOTCH2	1	120506375	Nonsense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	8548435	120506375	128744246	6	3550											
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156294858	156294858	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	156294858	A	G	156294858	2	3	52	1	0	0	0	0	0	0	0	1	2956	175	7	3		3	CCT3	1	156294858	Silent	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	35788483	156294858	92955763	7	3551											
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	222705394	222705394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	222705394	C	T	222705394	3	4	52	1	0	0	0	0	1	0	0	0	7101	710	25	2	553	2	HHIPL2	1	222705394	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	66410536	222705394	26545227	8	3552											
C1orf95	375057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226784625	226784625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	226784625	G	A	226784625	3	1	52	1	0	0	0	0	1	0	0	0	2074	1145	40	1	331	1	C1orf95	1	226784625	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	4079231	226784625	22465996	9	3553											
FANCL	55120	broad.mit.edu	37	2	58386912	58386912	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	58386912	T	C	58386912	2	2	52	1	0	0	0	0	0	0	0	1	5677	1770	62	3		3	FANCL	2	58386912	Silent	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10		58386912	184812461	10	3554											
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	80136916	80136916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	80136916	T	C	80136916	3	2	52	1	0	0	0	0	1	0	0	0	4015	1464	51	3		3	CTNNA2	2	80136916	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	21750004	80136916	163062457	11	3555											
DLX2	1746	broad.mit.edu	37	2	172967129	172967131	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	172967131	GCT	-	172967129	7	5	52	1	0	1	0	1	0	0	0	0	4573	1194	42	0	860	0	DLX2	2	172967129	In_Frame_Del	DEL	GCT	TCGA-A4-A5Y0-01A-11D-A31X-10	92830213	172967129	70232244	12	3556											
ZNF804A	91752	hgsc.bcm.edu	37	2	185802216	185802216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	185802216	T	C	185802216	3	2	52	1	0	0	0	0	1	0	0	0	18182	1406	49	3	2107	3	ZNF804A	2	185802216	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	12835087	185802216	57397157	13	3557											
TFPI	7035	broad.mit.edu	37	2	188332481	188332481	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	188332481	T	-	188332481	7	5	52	1	0	1	0	1	0	0	0	0	15820	1623	56	0	115	0	TFPI	2	188332481	Frame_Shift_Del	DEL	T	TCGA-A4-A5Y0-01A-11D-A31X-10	2530265	188332481	54866892	14	3558											
WDR75	84128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190306269	190306269	+	Missense_Mutation	SNP	G	G	C	rs201125667		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	190306269	G	C	190306269	3	2	52	1	0	0	0	0	1	0	0	0	17337	1281	45	4	53	4	WDR75	2	190306269	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	1973788	190306269	52893104	15	3559											
FAM117B	150864	broad.mit.edu	37	2	203500041	203500043	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	203500043	AGC	-	203500041	7	5	52	1	0	1	0	1	0	0	0	0	5414	72	3	0	133	0	FAM117B	2	203500041	In_Frame_Del	DEL	AGC	TCGA-A4-A5Y0-01A-11D-A31X-10	13193772	203500041	39699332	16	3560											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225362540	225362540	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	225362540	C	G	225362540	3	3	52	1	0	0	0	0	1	0	0	0	4058	884	31	4	689	4	CUL3	2	225362540	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	21862499	225362540	17836833	17	3561											
TRIP12	9320	bcgsc.ca	37	2	230675639	230675639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	230675639	C	T	230675639	3	4	52	1	0	0	0	0	1	0	0	0	16568	478	17	2	4056	2	TRIP12	2	230675639	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	5313099	230675639	12523734	18	3562											
ULK4	54986	hgsc.bcm.edu;bcgsc.ca	37	3	41795965	41795965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	41795965	T	-	41795965	7	5	52	1	0	1	0	1	0	0	0	0	16990	1493	52	0	1682	0	ULK4	3	41795965	Frame_Shift_Del	DEL	T	TCGA-A4-A5Y0-01A-11D-A31X-10		41795965	156226465	19	3563											
CISH	1154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50645901	50645901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	50645901	C	A	50645901	3	1	52	1	0	0	0	0	1	0	0	0	3439	680	24	4	640	4	CISH	3	50645901	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	8849936	50645901	147376529	20	3564											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52380547	52380547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	52380547	C	A	52380547	3	1	52	1	0	0	0	0	1	0	0	0	4599	738	26	4	1754	4	DNAH1	3	52380547	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	1734646	52380547	145641883	21	3565											
IL17RB	55540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	53886139	53886147	+	In_Frame_Del	DEL	CCCTCTGGT	CCCTCTGGT	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	CCCTCTGGT	CCCTCTGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	53886147	CCCTCTGGT	-	53886139	7	5	52	1	0	1	0	1	0	0	0	0	7647	507	18	0	354	0	IL17RB	3	53886139	In_Frame_Del	DEL	CCCTCTGGT	TCGA-A4-A5Y0-01A-11D-A31X-10	1505592	53886139	144136291	22	3566											
A4GNT	51146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137849689	137849689	+	Splice_Site	SNP	A	A	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	137849689	A	C	137849689	5	2	52	1	0	0	0	0	0	0	1	0	7	405	14	5	620	5	A4GNT	3	137849689	Splice_Site	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	83963550	137849689	60172741	23	3567											
PLS1	5357	ucsc.edu;bcgsc.ca	37	3	142403182	142403182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	142403182	A	G	142403182	3	3	52	1	0	0	0	0	1	0	0	0	12114	391	14	3	859	3	PLS1	3	142403182	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	4553493	142403182	55619248	24	3568											
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	170020905	170020905	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	170020905	A	-	170020905	7	5	52	1	0	1	0	1	0	0	0	0	12524	246	9	0	1851	0	PRKCI	3	170020905	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	27617723	170020905	28001525	25	3569											
ACTL6A	86	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179298770	179298770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	179298770	G	T	179298770	4	4	52	1	0	0	0	0	0	1	0	0	198	1001	35	4	957	4	ACTL6A	3	179298770	Nonsense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	9277865	179298770	18723660	26	3570											
KLB	152831	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39435920	39435920	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	39435920	G	T	39435920	4	4	52	1	0	0	0	0	0	1	0	0	8339	1059	37	4	922	4	KLB	4	39435920	Nonsense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		39435920	151718356	27	3571											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	85722839	85722839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	85722839	C	A	85722839	3	1	52	1	0	0	0	0	1	0	0	0	17282	884	31	4	8002	4	WDFY3	4	85722839	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	46286919	85722839	105431437	28	3572											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33534943	33534943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	33534943	C	A	33534943	3	1	52	1	0	0	0	0	1	0	0	0	257	565	20	4	191	4	ADAMTS12	5	33534943	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		33534943	147380317	29	3573											
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140605127	140605127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	140605127	G	A	140605127	3	1	52	1	0	0	0	0	1	0	0	0	11546	1058	37	1	2052	1	PCDHB14	5	140605127	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	107070184	140605127	40310133	30	3574											
CD83	9308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	14133946	14133946	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	14133946	C	-	14133946	7	5	52	1	0	1	0	1	0	0	0	0	3043	797	28	0	463	0	CD83	6	14133946	Frame_Shift_Del	DEL	C	TCGA-A4-A5Y0-01A-11D-A31X-10		14133946	156981121	31	3575											
E2F3	1871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	20490451	20490451	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	20490451	C	G	20490451	3	3	52	1	0	0	0	0	1	0	0	0	4870	506	18	4	1214	4	E2F3	6	20490451	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	6356505	20490451	150624616	32	3576											
HLA-A	3105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29910554	29910554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	29910554	T	G	29910554	3	3	52	1	0	0	0	0	1	0	0	0	7202	1841	64	5	100	5	HLA-A	6	29910554	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	9420103	29910554	141204513	33	3577											
BRD2	6046	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	32944714	32944714	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	32944714	G	A	32944714	5	1	52	1	0	0	0	0	0	0	1	0	1504	1275	44	2	1223	2	BRD2	6	32944714	Splice_Site	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	3034160	32944714	138170353	34	3578											
CAPN11	11131	broad.mit.edu	37	6	44148401	44148401	+	Splice_Site	SNP	T	T	G	rs200836901	alternate_allele	TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	44148401	T	G	44148401	5	3	52	1	0	0	0	0	0	0	1	0	2626	1710	59	5	1810	5	CAPN11	6	44148401	Splice_Site	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	11203687	44148401	126966666	35	3579											
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90392973	90392973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	90392973	T	G	90392973	3	3	52	1	0	0	0	0	1	0	0	0	9422	1821	63	5	4930	5	MDN1	6	90392973	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	46244572	90392973	80722094	36	3580											
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	101075824	101075824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	101075824	C	A	101075824	3	1	52	1	0	0	0	0	1	0	0	0	1033	884	31	4	2253	4	ASCC3	6	101075824	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	10682851	101075824	70039243	37	3581											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107807453	107807453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	107807453	T	C	107807453	3	2	52	1	0	0	0	0	1	0	0	0	10651	1493	52	3	581	3	NRCAM	7	107807453	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10		107807453	51331210	38	3582											
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142750247	142750247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	142750247	G	C	142750247	3	2	52	1	0	0	0	0	1	0	0	0	11218	991	35	4	812	4	OR6V1	7	142750247	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	34942794	142750247	16388416	39	3583											
DNAJB6	10049	broad.mit.edu;bcgsc.ca	37	7	157177601	157177601	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	157177601	T	C	157177601	2	2	52	1	0	0	0	0	0	0	0	1	4626	1596	56	3		3	DNAJB6	7	157177601	Silent	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	14427354	157177601	1961062	40	3584			1	9		2	2	12	N	T_C	2.878169e-05
DNAJB6	10049	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157177612	157177612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	157177612	C	T	157177612	3	4	52	1	0	0	0	0	1	0	0	0	4626	855	30	2	552	2	DNAJB6	7	157177612	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	11	157177612	1961051	41	3585			1	9		2	2	12	N	T_C	2.878169e-05
SNAI2	6591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	49833817	49833817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	49833817	C	G	49833817	3	3	52	1	0	0	0	0	1	0	0	0	14840	768	27	4	810	4	SNAI2	8	49833817	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		49833817	96530205	42	3586											
MTSS1	9788	hgsc.bcm.edu;bcgsc.ca	37	8	125570101	125570101	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	125570101	A	-	125570101	7	5	52	1	0	1	0	1	0	0	0	0	9969	246	9	0	1232	0	MTSS1	8	125570101	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	75736284	125570101	20793921	43	3587											
RFX3	5991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	3301560	3301560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	3301560	G	A	3301560	3	1	52	1	0	0	0	0	1	0	0	0	13277	942	33	2	1922	2	RFX3	9	3301560	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		3301560	137911871	44	3588											
RASEF	158158	broad.mit.edu;bcgsc.ca	37	9	85637283	85637283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	85637283	T	G	85637283	3	3	52	1	0	0	0	0	1	0	0	0	13081	1435	50	5	1645	5	RASEF	9	85637283	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	82335723	85637283	55576148	45	3589											
EXOSC2	23404	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	133579154	133579154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	133579154	A	-	133579154	7	5	52	1	0	1	0	1	0	0	0	0	5317	304	11	0	909	0	EXOSC2	9	133579154	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	47941871	133579154	7634277	46	3590											
CYP26C1	340665	broad.mit.edu	37	10	94828244	94828244	+	Silent	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	94828244	C	A	94828244	2	1	52	1	0	0	0	0	0	0	0	1	4159	755	27	4		4	CYP26C1	10	94828244	Silent	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		94828244	40706503	47	3591											
MUC5B	727897	hgsc.bcm.edu	37	11	1276776	1276776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	1276776	G	T	1276776	3	4	52	1	0	0	0	0	1	0	0	0	9986	1116	39	4	16209	4	MUC5B	11	1276776	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		1276776	133729740	48	3592											
OSBPL5	114879	ucsc.edu	37	11	3143330	3143330	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	3143330	T	C	3143330	5	2	52	1	0	0	0	0	0	0	1	0	11287	1594	55	3	2412	3	OSBPL5	11	3143330	Splice_Site	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	1866554	3143330	131863186	49	3593											
DTX4	23220	ucsc.edu;bcgsc.ca	37	11	58949824	58949824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	58949824	C	T	58949824	3	4	52	1	0	0	0	0	1	0	0	0	4799	739	26	2	830	2	DTX4	11	58949824	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	55806494	58949824	76056692	50	3594											
SF3B2	10992	broad.mit.edu;bcgsc.ca	37	11	65826742	65826742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	65826742	C	T	65826742	3	4	52	1	0	0	0	0	1	0	0	0	14164	739	26	2	1295	2	SF3B2	11	65826742	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	6876918	65826742	69179774	51	3595											
VPS26B	112936	broad.mit.edu;bcgsc.ca	37	11	134095054	134095054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	134095054	A	T	134095054	3	4	52	1	0	0	0	0	1	0	0	0	17210	246	9	5	40	5	VPS26B	11	134095054	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	68268312	134095054	911462	52	3596											
WNT10B	7480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49362081	49362081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	49362081	G	T	49362081	3	4	52	1	0	0	0	0	1	0	0	0	17395	1174	41	4	818	4	WNT10B	12	49362081	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		49362081	84489814	53	3597											
BAZ2A	11176	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57006901	57006901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	57006901	T	A	57006901	3	1	52	1	0	0	0	0	1	0	0	0	1331	1754	61	5	4778	5	BAZ2A	12	57006901	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	7644820	57006901	76844994	54	3598											
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	83251132	83251132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	83251132	G	T	83251132	3	4	52	1	0	0	0	0	1	0	0	0	16273	1116	39	4	433	4	TMTC2	12	83251132	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	26244231	83251132	50600763	55	3599											
FOXA1	3169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38060788	38060788	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	38060788	A	T	38060788	3	4	52	1	0	0	0	0	1	0	0	0	5996	304	11	5	221	5	FOXA1	14	38060788	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10		38060788	69288752	56	3600											
C14orf169	79697	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73959009	73959009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	73959009	G	A	73959009	3	1	52	1	0	0	0	0	1	0	0	0	1760	1277	45	2	1289	2	C14orf169	14	73959009	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	35898221	73959009	33390531	57	3601											
C15orf56	644809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40544920	40544920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	40544920	C	T	40544920	3	4	52	1	0	0	0	0	1	0	0	0	1806	884	31	1	323	1	C15orf56	15	40544920	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		40544920	61986472	58	3602											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40914359	40914359	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	40914359	A	-	40914359	7	5	52	1	0	1	0	1	0	0	0	0	2665	188	7	0	2013	0	CASC5	15	40914359	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	369439	40914359	61617033	59	3603											
EME2	197342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1826070	1826070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	1826070	C	T	1826070	3	4	52	1	0	0	0	0	1	0	0	0	5091	782	27	1	1196	1	EME2	16	1826070	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		1826070	88528683	60	3604											
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2369834	2369834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	2369834	G	C	2369834	3	2	52	1	0	0	0	0	1	0	0	0	33	1164	41	4	4597	4	ABCA3	16	2369834	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	543764	2369834	87984919	61	3605											
ADCY9	115	hgsc.bcm.edu;bcgsc.ca	37	16	4042307	4042307	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	4042307	C	-	4042307	7	5	52	1	0	1	0	1	0	0	0	0	301	864	30	0	2042	0	ADCY9	16	4042307	Frame_Shift_Del	DEL	C	TCGA-A4-A5Y0-01A-11D-A31X-10	1672473	4042307	86312446	62	3606											
PRM3	58531	hgsc.bcm.edu	37	16	11367405	11367405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	11367405	G	C	11367405	3	2	52	1	0	0	0	0	1	0	0	0	12544	1368	48	4	264	4	PRM3	16	11367405	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	7325098	11367405	78987348	63	3607											
DCTPP1	79077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30435583	30435583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	30435583	A	T	30435583	3	4	52	1	0	0	0	0	1	0	0	0	4314	188	7	5	32	5	DCTPP1	16	30435583	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	19068178	30435583	59919170	64	3608											
DHX38	9785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72142801	72142801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	72142801	C	T	72142801	3	4	52	1	0	0	0	0	1	0	0	0	4513	826	29	2	3448	2	DHX38	16	72142801	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	41707218	72142801	18211952	65	3609											
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10215392	10215392	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	-	10215392	A	-	10215392	7	5	52	1	0	1	0	1	0	0	0	0	10039	289	10	0	1489	0	MYH13	17	10215392	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10		10215392	70979818	66	3610											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15971431	15971431	+	Silent	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	15971431	T	G	15971431	2	3	52	1	0	0	0	0	0	0	0	1	10242	1799	63	5		5	NCOR1	17	15971431	Silent	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	5756039	15971431	65223779	67	3611											
CCR7	1236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38711306	38711306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	38711306	G	T	38711306	3	4	52	1	0	0	0	0	1	0	0	0	2948	1165	41	4	315	4	CCR7	17	38711306	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	22739875	38711306	42483904	68	3612											
SLC4A1	6521	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42335911	42335911	+	Silent	SNP	T	T	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	42335911	T	A	42335911	2	1	52	1	0	0	0	0	0	0	0	1	14663	1509	53	5		5	SLC4A1	17	42335911	Silent	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	3624605	42335911	38859299	69	3613											
PPP1R9B	84687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48216644	48216644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	48216644	T	C	48216644	3	2	52	1	0	0	0	0	1	0	0	0	12389	1580	55	3	412	3	PPP1R9B	17	48216644	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	5880733	48216644	32978566	70	3614											
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	51901648	51901648	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	51901648	C	T	51901648	2	4	52	1	0	0	0	0	0	0	0	1	8305	813	29	2		2	KIF2B	17	51901648	Silent	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	3685004	51901648	29293562	71	3615											
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61613115	61613115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	61613115	A	G	61613115	3	3	52	1	0	0	0	0	1	0	0	0	8043	449	16	3	1209	3	KCNH6	17	61613115	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	9711467	61613115	19582095	72	3616											
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	6992669	6992669	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	6992669	G	A	6992669	2	1	52	1	0	0	0	0	0	0	0	1	8612	1020	36	2		2	LAMA1	18	6992669	Silent	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		6992669	71084579	73	3617											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9257703	9257703	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	9257703	C	G	9257703	3	3	52	1	0	0	0	0	1	0	0	0	640	827	29	4	4468	4	ANKRD12	18	9257703	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	2265034	9257703	68819545	74	3618											
MBP	4155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74700845	74700845	+	Silent	SNP	C	C	T	rs112511603		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	74700845	C	T	74700845	2	4	52	1	0	0	0	0	0	0	0	1	9366	523	19	1		1	MBP	18	74700845	Silent	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	65443142	74700845	3376403	75	3619											
ZNF43	7594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21990696	21990696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	21990696	A	T	21990696	3	4	52	1	0	0	0	0	1	0	0	0	17915	14	1	5	290	5	ZNF43	19	21990696	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10		21990696	37138287	76	3620											
FBXO46	23403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46215847	46215847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	C	46215847	T	C	46215847	3	2	52	1	0	0	0	0	1	0	0	0	5762	1821	63	3	908	3	FBXO46	19	46215847	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	24225151	46215847	12913136	77	3621											
EDN3	1908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57876603	57876603	+	Missense_Mutation	SNP	G	G	T	rs457651	alternate_allele	TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	T	57876603	G	T	57876603	3	4	52	1	0	0	0	0	1	0	0	0	4920	1232	43	4	197	4	EDN3	20	57876603	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		57876603	5148917	78	3622											
AR	367	hgsc.bcm.edu	37	X	66765207	66765208	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	AG	66765208	GC	AG	66765207	3	1	52	1	0	0	0	0	1	0	0	0	836	962	34	2	221	2	AR	23	66765207	Missense_Mutation	DNP	GC	TCGA-A4-A5Y0-01A-11D-A31X-10		66765207	88505353	79	3623											
GLUD2	2747	ucsc.edu	37	X	120183026	120183026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	120183026	T	G	120183026	3	3	52	1	0	0	0	0	1	0	0	0	6484	1635	57	5	1490	5	GLUD2	23	120183026	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	53417819	120183026	35087534	80	3624											
ATP11C	286410	broad.mit.edu;bcgsc.ca	37	X	138857091	138857091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	G	138857091	C	G	138857091	3	3	52	1	0	0	0	0	1	0	0	0	1121	912	32	4	1526	4	ATP11C	23	138857091	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	18674065	138857091	16413469	81	3625											
CNGA2	1260	bcgsc.ca	37	X	150912596	150912596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	A	150912596	C	A	150912596	3	1	52	1	0	0	0	0	1	0	0	0	3599	652	23	4	1643	4	CNGA2	23	150912596	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	12055505	150912596	4357964	82	3626											
KLHL17	339451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	898747	898748	+	Missense_Mutation	DNP	GG	GG	AA	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	AA	898748	GG	AA	898747	3	1	53	1	0	0	0	0	1	0	0	0	8379	1335	47	2	1248	2	KLHL17	1	898747	Missense_Mutation	DNP	GG	TCGA-A4-A5Y1-01A-11D-A28G-10		898747	248351874	1	3627											
TMEM51	55092	broad.mit.edu	37	1	15541888	15541888	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	15541888	A	C	15541888	3	2	53	1	0	0	0	0	1	0	0	0	16189	159	6	5	307	5	TMEM51	1	15541888	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	14643141	15541888	233708733	2	3628											
FGGY	55277	hgsc.bcm.edu;bcgsc.ca	37	1	60019871	60019884	+	Frame_Shift_Del	DEL	TCTGTGGAACGTCT	TCTGTGGAACGTCT	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	TCTGTGGAACGTCT	TCTGTGGAACGTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	-	60019884	TCTGTGGAACGTCT	-	60019871	7	5	53	1	0	1	0	1	0	0	0	0	5878	1435	50	0	901	0	FGGY	1	60019871	Frame_Shift_Del	DEL	TCTGTGGAACGTCT	TCGA-A4-A5Y1-01A-11D-A28G-10	44477983	60019871	189230750	3	3629											
CD53	963	broad.mit.edu	37	1	111440473	111440473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	111440473	C	A	111440473	3	1	53	1	0	0	0	0	1	0	0	0	3025	680	24	4	569	4	CD53	1	111440473	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	51420602	111440473	137810148	4	3630											
CD1C	911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158261919	158261919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	158261919	G	A	158261919	3	1	53	1	0	0	0	0	1	0	0	0	2978	1174	41	2	384	2	CD1C	1	158261919	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	46821446	158261919	90988702	5	3631											
TMEM9	252839	ucsc.edu;bcgsc.ca	37	1	201104800	201104800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	201104800	C	T	201104800	3	4	53	1	0	0	0	0	1	0	0	0	16229	710	25	2	12	2	TMEM9	1	201104800	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	42842881	201104800	48145821	6	3632											
NVL	4931	bcgsc.ca	37	1	224468833	224468833	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	224468833	G	A	224468833	2	1	53	1	0	0	0	0	0	0	0	1	10787	1020	36	2		2	NVL	1	224468833	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	23364033	224468833	24781788	7	3633											
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17847696	17847696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	17847696	T	G	17847696	3	3	53	1	0	0	0	0	1	0	0	0	14800	1812	63	5	131	5	SMC6	2	17847696	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10		17847696	225351677	8	3634											
IFIH1	64135	ucsc.edu	37	2	163139080	163139080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	163139080	G	T	163139080	3	4	53	1	0	0	0	0	1	0	0	0	7527	962	34	4	2019	4	IFIH1	2	163139080	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	145291384	163139080	80060293	9	3635											
ITGA6	3655	hgsc.bcm.edu	37	2	173352476	173352476	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	-	173352476	A	-	173352476	7	5	53	1	0	1	0	1	0	0	0	0	7887	359	13	0	2331	0	ITGA6	2	173352476	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y1-01A-11D-A28G-10	10213396	173352476	69846897	10	3636											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179547441	179547441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	179547441	T	G	179547441	3	3	53	1	0	0	0	0	1	0	0	0	16747	1464	51	5	71364	5	TTN	2	179547441	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	6194965	179547441	63651932	11	3637											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	182765617	182765618	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	182765618	-	T	182765617	7	5	53	1	0	1	1	0	0	0	0	0	15195	101	4	0	724	0	SSFA2	2	182765617	Frame_Shift_Ins	INS	-	TCGA-A4-A5Y1-01A-11D-A28G-10	3218176	182765617	60433756	12	3638											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	186671593	186671593	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	186671593	C	T	186671593	4	4	53	1	0	0	0	0	0	1	0	0	6082	827	29	2	17893	2	FSIP2	2	186671593	Nonsense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	3905976	186671593	56527780	13	3639											
TNP1	7141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217724631	217724631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	217724631	G	A	217724631	3	1	53	1	0	0	0	0	1	0	0	0	16345	1144	40	1	48	1	TNP1	2	217724631	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	31053038	217724631	25474742	14	3640											
AGFG1	3267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228399580	228399580	+	Silent	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	228399580	C	G	228399580	2	3	53	1	0	0	0	0	0	0	0	1	380	784	28	4		4	AGFG1	2	228399580	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	10674949	228399580	14799793	15	3641											
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	235943690	235943690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	235943690	C	T	235943690	3	4	53	1	0	0	0	0	1	0	0	0	14259	681	24	2	46	2	SH3BP4	2	235943690	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	7544110	235943690	7255683	16	3642											
IQSEC1	9922	broad.mit.edu	37	3	12949941	12949941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	12949941	A	T	12949941	3	4	53	1	0	0	0	0	1	0	0	0	7824	188	7	5	743	5	IQSEC1	3	12949941	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10		12949941	185072489	17	3643											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47098859	47098859	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	-	47098859	G	-	47098859	7	5	53	1	0	1	0	1	0	0	0	0	14144	1328	46	0	1307	0	SETD2	3	47098859	Frame_Shift_Del	DEL	G	TCGA-A4-A5Y1-01A-11D-A28G-10	34148918	47098859	150923571	18	3644	41	2									
SETD2	29072	bcgsc.ca	37	3	47098860	47098860	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	47098860	C	T	47098860	2	4	53	1	0	0	0	0	0	0	0	1	14144	796	28	2		2	SETD2	3	47098860	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	1	47098860	150923570	19	3645	41	2									
ARMC8	25852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	137964017	137964040	+	In_Frame_Del	DEL	CGGAAGAAGGTGAGTCTGGGAGAG	CGGAAGAAGGTGAGTCTGGGAGAG	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	CGGAAGAAGGTGAGTCTGGGAGAG	CGGAAGAAGGTGAGTCTGGGAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	-	137964040	CGGAAGAAGGTGAGTCTGGGAGAG	-	137964017	7	5	53	1	0	1	0	1	0	0	0	0	957	643	23	0	1130	0	ARMC8	3	137964017	In_Frame_Del	DEL	CGGAAGAAGGTGAGTCTGGGAGAG	TCGA-A4-A5Y1-01A-11D-A28G-10	90865157	137964017	60058413	20	3646											
ATP1B3	483	bcgsc.ca	37	3	141626058	141626058	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	141626058	T	C	141626058	2	2	53	1	0	0	0	0	0	0	0	1	1134	1635	57	3		3	ATP1B3	3	141626058	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	3662041	141626058	56396372	21	3647											
GPR87	53836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151012432	151012432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	151012432	A	T	151012432	3	4	53	1	0	0	0	0	1	0	0	0	6723	275	10	5	478	5	GPR87	3	151012432	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	9386374	151012432	47009998	22	3648											
SENP5	205564	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196612951	196612952	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	196612952	-	T	196612951	7	5	53	1	0	1	1	0	0	0	0	0	14062	913	32	0	901	0	SENP5	3	196612951	Frame_Shift_Ins	INS	-	TCGA-A4-A5Y1-01A-11D-A28G-10	45600519	196612951	1409479	23	3649											
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	39851206	39851213	+	Frame_Shift_Del	DEL	CTTCATAA	CTTCATAA	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	CTTCATAA	CTTCATAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	-	39851213	CTTCATAA	-	39851206	7	5	53	1	0	1	0	1	0	0	0	0	11698	912	32	0	888	0	PDS5A	4	39851206	Frame_Shift_Del	DEL	CTTCATAA	TCGA-A4-A5Y1-01A-11D-A28G-10		39851206	151303070	24	3650	42	2									
PDS5A	23244	bcgsc.ca	37	4	39851214	39851214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	39851214	A	G	39851214	3	3	53	1	0	0	0	0	1	0	0	0	11698	72	3	3	896	3	PDS5A	4	39851214	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	8	39851214	151303062	25	3651	42	2									
SLC10A4	201780	hgsc.bcm.edu	37	4	48485850	48485850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	48485850	C	G	48485850	3	3	53	1	0	0	0	0	1	0	0	0	14389	623	22	4	274	4	SLC10A4	4	48485850	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	8634636	48485850	142668426	26	3652											
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	56502304	G	T	56502304	3	4	53	1	0	0	0	0	1	0	0	0	10512	1087	38	4	504	4	NMU	4	56502304	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	8016454	56502304	134651972	27	3653											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123260393	123260393	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	123260393	T	A	123260393	3	1	53	1	0	0	0	0	1	0	0	0	8215	1638	57	5	12460	5	KIAA1109	4	123260393	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	66758089	123260393	67893883	28	3654											
NKD2	85409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1033498	1033498	+	Missense_Mutation	SNP	G	G	A	rs144426465		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	1033498	G	A	1033498	3	1	53	1	0	0	0	0	1	0	0	0	10449	1087	38	1	232	1	NKD2	5	1033498	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		1033498	179881762	29	3655											
DEPDC1B	55789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	59893587	59893587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	59893587	C	T	59893587	3	4	53	1	0	0	0	0	1	0	0	0	4442	884	31	1	10	1	DEPDC1B	5	59893587	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	58860089	59893587	121021673	30	3656											
AP3B1	8546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	77521385	77521385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	77521385	A	C	77521385	3	2	53	1	0	0	0	0	1	0	0	0	744	72	3	5	2788	5	AP3B1	5	77521385	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	17627798	77521385	103393875	31	3657											
IK	3550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140037217	140037217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	140037217	C	T	140037217	3	4	53	1	0	0	0	0	1	0	0	0	7615	652	23	1	918	1	IK	5	140037217	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	62515832	140037217	40878043	32	3658											
PCDHB6	56130	broad.mit.edu	37	5	140531290	140531290	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	140531290	C	T	140531290	2	4	53	1	0	0	0	0	0	0	0	1	11553	813	29	2		2	PCDHB6	5	140531290	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	494073	140531290	40383970	33	3659											
PCDHGB3	56102	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140751665	140751665	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	140751665	G	A	140751665	2	1	53	1	0	0	0	0	0	0	0	1	11571	1190	42	2		2	PCDHGB3	5	140751665	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	220375	140751665	40163595	34	3660											
NMUR2	56923	broad.mit.edu	37	5	151775087	151775088	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	AT	151775088	GA	AT	151775087	3	1	53	1	0	0	0	0	1	0	0	0	10514	933	33	2	385	2	NMUR2	5	151775087	Missense_Mutation	DNP	GA	TCGA-A4-A5Y1-01A-11D-A28G-10	11023422	151775087	29140173	35	3661											
FAM65B	9750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24836059	24836059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	24836059	C	T	24836059	3	4	53	1	0	0	0	0	1	0	0	0	5607	835	29	2	1095	2	FAM65B	6	24836059	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		24836059	146279008	36	3662											
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26056096	26056096	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	26056096	T	C	26056096	2	2	53	1	0	0	0	0	0	0	0	1	7131	1838	64	3		3	HIST1H1C	6	26056096	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	1220037	26056096	145058971	37	3663											
GRM4	2914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	34059858	34059858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	34059858	C	T	34059858	3	4	53	1	0	0	0	0	1	0	0	0	6806	768	27	1	2236	1	GRM4	6	34059858	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	8003762	34059858	137055209	38	3664											
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103050896	103050896	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	103050896	G	C	103050896	3	2	53	1	0	0	0	0	1	0	0	0	14533	1174	41	4	1660	4	SLC26A5	7	103050896	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		103050896	56087767	39	3665											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131887415	131887415	+	Missense_Mutation	SNP	C	C	T	rs201337636		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	131887415	C	T	131887415	3	4	53	1	0	0	0	0	1	0	0	0	12129	768	27	1	3192	1	PLXNA4	7	131887415	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	28836519	131887415	27251248	40	3666											
EIF4EBP1	1978	bcgsc.ca	37	8	37914734	37914734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	37914734	G	A	37914734	3	1	53	1	0	0	0	0	1	0	0	0	5034	971	34	2	287	2	EIF4EBP1	8	37914734	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		37914734	108449288	41	3667											
STAU2	27067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	74464271	74464271	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	74464271	A	G	74464271	2	3	53	1	0	0	0	0	0	0	0	1	15285	108	4	3		3	STAU2	8	74464271	Silent	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	36549537	74464271	71899751	42	3668											
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	15468982	15468982	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	-	15468982	G	-	15468982	7	5	53	1	0	1	0	1	0	0	0	0	12673	1368	48	0	429	0	PSIP1	9	15468982	Frame_Shift_Del	DEL	G	TCGA-A4-A5Y1-01A-11D-A28G-10		15468982	125744449	43	3669											
OR13F1	138805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107267461	107267461	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	107267461	T	G	107267461	3	3	53	1	0	0	0	0	1	0	0	0	10948	1742	61	5	920	5	OR13F1	9	107267461	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	91798479	107267461	33945970	44	3670											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131379924	131379924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	131379924	A	G	131379924	3	3	53	1	0	0	0	0	1	0	0	0	15129	72	3	3	5525	3	SPTAN1	9	131379924	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	24112463	131379924	9833507	45	3671											
EHMT1	79813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140710514	140710514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	140710514	G	A	140710514	3	1	53	1	0	0	0	0	1	0	0	0	4985	1014	35	2	3513	2	EHMT1	9	140710514	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	9330590	140710514	502917	46	3672											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17169853	17169853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	17169853	C	A	17169853	3	1	53	1	0	0	0	0	1	0	0	0	4053	565	20	4	10808	4	CUBN	10	17169853	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		17169853	118364894	47	3673											
SLC25A28	81894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101370968	101370968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	101370968	T	A	101370968	3	1	53	1	0	0	0	0	1	0	0	0	14504	1667	58	5	365	5	SLC25A28	10	101370968	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	84201115	101370968	34163779	48	3674											
VAX1	11023	hgsc.bcm.edu	37	10	118893699	118893699	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	118893699	C	T	118893699	2	4	53	1	0	0	0	0	0	0	0	1	17146	697	25	2		2	VAX1	10	118893699	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	17522731	118893699	16641048	49	3675											
PDZD8	118987	broad.mit.edu	37	10	119044855	119044855	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	119044855	G	A	119044855	2	1	53	1	0	0	0	0	0	0	0	1	11712	1190	42	2		2	PDZD8	10	119044855	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	151156	119044855	16489892	50	3676											
MUC2	4583	broad.mit.edu	37	11	1092950	1092950	+	Missense_Mutation	SNP	C	C	T	rs199605832		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	1092950	C	T	1092950	3	4	53	1	0	0	0	0	1	0	0	0	9982	565	20	2	4887	2	MUC2	11	1092950	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		1092950	133913566	51	3677											
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	1253980	A	G	1253980	3	3	53	1	0	0	0	0	1	0	0	0	9986	275	10	3	2120	3	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	161030	1253980	133752536	52	3678											
KCNQ1	3784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2798240	2798240	+	Silent	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	2798240	C	G	2798240	2	3	53	1	0	0	0	0	0	0	0	1	8089	668	24	4		4	KCNQ1	11	2798240	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	1544260	2798240	132208276	53	3679											
SOX6	55553	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	16010773	16010773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	16010773	C	A	16010773	3	1	53	1	0	0	0	0	1	0	0	0	14968	565	20	4	762	4	SOX6	11	16010773	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	13212533	16010773	118995743	54	3680											
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	30032894	30032894	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	30032894	T	C	30032894	2	2	53	1	0	0	0	0	0	0	0	1	8012	1780	62	3		3	KCNA4	11	30032894	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	14022121	30032894	104973622	55	3681											
TRIM44	54765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	35684955	35684956	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	35684956	-	T	35684955	7	5	53	1	0	1	1	0	0	0	0	0	16531	1029	36	0	298	0	TRIM44	11	35684955	Frame_Shift_Ins	INS	-	TCGA-A4-A5Y1-01A-11D-A28G-10	5652061	35684955	99321561	56	3682											
AMBRA1	55626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46419222	46419222	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	46419222	G	A	46419222	2	1	53	1	0	0	0	0	0	0	0	1	565	1190	42	2		2	AMBRA1	11	46419222	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	10734267	46419222	88587294	57	3683											
C12orf39	80763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21680692	21680692	+	Silent	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	21680692	G	C	21680692	2	2	53	1	0	0	0	0	0	0	0	1	1686	1161	41	4		4	C12orf39	12	21680692	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		21680692	112171203	58	3684											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49436945	49436945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	49436945	G	A	49436945	3	1	53	1	0	0	0	0	1	0	0	0	9628	1319	46	2	11175	2	MLL2	12	49436945	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	27756253	49436945	84414950	59	3685											
MDM1	56890	ucsc.edu;bcgsc.ca	37	12	68715135	68715135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	68715135	G	A	68715135	3	1	53	1	0	0	0	0	1	0	0	0	9419	1203	42	2	1179	2	MDM1	12	68715135	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	19278190	68715135	65136760	60	3686											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23886422	23886422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	23886422	C	T	23886422	3	4	53	1	0	0	0	0	1	0	0	0	10046	768	27	1	1384	1	MYH7	14	23886422	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		23886422	83463118	61	3687											
NFKBIA	4792	broad.mit.edu	37	14	35871853	35871853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	35871853	C	T	35871853	3	4	53	1	0	0	0	0	1	0	0	0	10384	652	23	1	308	1	NFKBIA	14	35871853	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	11985431	35871853	71477687	62	3688											
ABHD12B	145447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51368558	51368558	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	51368558	C	T	51368558	2	4	53	1	0	0	0	0	0	0	0	1	77	477	17	2		2	ABHD12B	14	51368558	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	15496705	51368558	55980982	63	3689											
MPP5	64398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67787027	67787027	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	67787027	T	C	67787027	2	2	53	1	0	0	0	0	0	0	0	1	9744	1606	56	3		3	MPP5	14	67787027	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	16418469	67787027	39562513	64	3690											
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75248111	75248111	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	75248111	G	A	75248111	4	1	53	1	0	0	0	0	0	1	0	0	17498	1241	43	2	1379	2	YLPM1	14	75248111	Nonsense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	7461084	75248111	32101429	65	3691											
CATSPERB	79820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	92195753	92195753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	92195753	T	C	92195753	3	2	53	1	0	0	0	0	1	0	0	0	2693	1406	49	3	3383	3	CATSPERB	14	92195753	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	16947642	92195753	15153787	66	3692											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40913801	40913801	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	40913801	A	T	40913801	4	4	53	1	0	0	0	0	0	1	0	0	2665	296	11	5	1455	5	CASC5	15	40913801	Nonsense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10		40913801	61617591	67	3693											
RNF111	54778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	59344604	59344604	+	Missense_Mutation	SNP	G	G	T	rs137923008	byfrequency;alternate_allele	TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	59344604	G	T	59344604	3	4	53	1	0	0	0	0	1	0	0	0	13438	933	33	4	987	4	RNF111	15	59344604	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	18430803	59344604	43186788	68	3694											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62155703	62155703	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	62155703	C	A	62155703	4	1	53	1	0	0	0	0	0	1	0	0	17203	922	32	4	389	4	VPS13C	15	62155703	Nonsense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	2811099	62155703	40375689	69	3695											
PIAS1	8554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68434644	68434644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	68434644	A	G	68434644	3	3	53	1	0	0	0	0	1	0	0	0	11882	131	5	3	585	3	PIAS1	15	68434644	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	6278941	68434644	34096748	70	3696											
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	81517938	81517938	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	81517938	A	G	81517938	2	3	53	1	0	0	0	0	0	0	0	1	7640	204	8	3		3	IL16	15	81517938	Silent	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	13083294	81517938	21013454	71	3697											
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89856164	89856164	+	Silent	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	89856164	A	T	89856164	2	4	53	1	0	0	0	0	0	0	0	1	5676	291	11	5		5	FANCI	15	89856164	Silent	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	8338226	89856164	12675228	72	3698											
C16orf11	146325	hgsc.bcm.edu	37	16	614703	614703	+	Missense_Mutation	SNP	G	G	C	rs199532631		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	614703	G	C	614703	3	2	53	1	0	0	0	0	1	0	0	0	1812	1357	47	4	1118	4	C16orf11	16	614703	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		614703	89740050	73	3699											
BAIAP3	8938	bcgsc.ca	37	16	1397801	1397801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	1397801	C	A	1397801	3	1	53	1	0	0	0	0	1	0	0	0	1304	680	24	4	3231	4	BAIAP3	16	1397801	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	783098	1397801	88956952	74	3700											
FAHD1	81889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1877593	1877593	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	1877593	G	T	1877593	2	4	53	1	0	0	0	0	0	0	0	1	5376	1335	47	4		4	FAHD1	16	1877593	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	479792	1877593	88477160	75	3701											
PKD1	5310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2153522	2153522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	2153522	T	C	2153522	3	2	53	1	0	0	0	0	1	0	0	0	11970	1696	59	3	4471	3	PKD1	16	2153522	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	275929	2153522	88201231	76	3702											
PDXDC1	23042	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15127164	15127164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	15127164	C	T	15127164	3	4	53	1	0	0	0	0	1	0	0	0	11703	681	24	2	1794	2	PDXDC1	16	15127164	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	12973642	15127164	75227589	77	3703											
CMTM4	146223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	66670440	66670440	+	Silent	SNP	T	T	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	66670440	T	A	66670440	2	1	53	1	0	0	0	0	0	0	0	1	3587	1451	51	5		5	CMTM4	16	66670440	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	51543276	66670440	23684313	78	3704											
PRDM7	11105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90127007	90127007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	90127007	A	T	90127007	3	4	53	1	0	0	0	0	1	0	0	0	12471	214	8	5	511	5	PRDM7	16	90127007	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	23456567	90127007	227746	79	3705											
SHPK	23729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3514081	3514081	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	3514081	G	T	3514081	2	4	53	1	0	0	0	0	0	0	0	1	14303	1124	39	4		4	SHPK	17	3514081	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		3514081	77681129	80	3706											
P2RX1	5023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3808622	3808622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	3808622	G	C	3808622	3	2	53	1	0	0	0	0	1	0	0	0	11346	1078	38	4	1066	4	P2RX1	17	3808622	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	294541	3808622	77386588	81	3707											
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4873373	4873373	+	Missense_Mutation	SNP	G	G	A	rs189574616		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	4873373	G	A	4873373	3	1	53	1	0	0	0	0	1	0	0	0	2616	1203	42	2	669	2	CAMTA2	17	4873373	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	1064751	4873373	76321837	82	3708											
TP53I13	90313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27899239	27899239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	27899239	C	G	27899239	3	3	53	1	0	0	0	0	1	0	0	0	16398	913	32	4	615	4	TP53I13	17	27899239	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	23025866	27899239	53295971	83	3709											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29220519	29220519	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	29220519	A	T	29220519	4	4	53	1	0	0	0	0	0	1	0	0	1076	247	9	5	4730	5	ATAD5	17	29220519	Nonsense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	1321280	29220519	51974691	84	3710											
C17orf64	124773	broad.mit.edu	37	17	58499974	58499975	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	58499975	-	G	58499974	7	5	53	1	0	1	1	0	0	0	0	0	1874	69	3	0	23	0	C17orf64	17	58499974	Frame_Shift_Ins	INS	-	TCGA-A4-A5Y1-01A-11D-A28G-10	29279455	58499974	22695236	85	3711											
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	20606136	20606136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	20606136	C	G	20606136	3	3	53	1	0	0	0	0	1	0	0	0	13118	681	24	4	2697	4	RBBP8	18	20606136	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		20606136	57471112	86	3712											
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1481811	1481811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	1481811	G	A	1481811	3	1	53	1	0	0	0	0	1	0	0	0	11609	1116	39	1	56	1	PCSK4	19	1481811	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		1481811	57647172	87	3713											
NRTN	4902	hgsc.bcm.edu	37	19	5827909	5827909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	5827909	G	A	5827909	3	1	53	1	0	0	0	0	1	0	0	0	10671	1059	37	1	325	1	NRTN	19	5827909	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	4346098	5827909	53301074	88	3714											
MED26	9441	bcgsc.ca	37	19	16688124	16688124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	16688124	G	C	16688124	3	2	53	1	0	0	0	0	1	0	0	0	9451	991	35	4	1289	4	MED26	19	16688124	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	10860215	16688124	42440859	89	3715											
GAPDHS	26330	hgsc.bcm.edu	37	19	36033313	36033313	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	36033313	T	C	36033313	5	2	53	1	0	0	0	0	0	0	1	0	6244	1652	57	3	560	3	GAPDHS	19	36033313	Splice_Site	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	19345189	36033313	23095670	90	3716											
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36606539	36606539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	36606539	A	T	36606539	3	4	53	1	0	0	0	0	1	0	0	0	15642	72	3	5	79	5	TBCB	19	36606539	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	573226	36606539	22522444	91	3717											
FBL	2091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40330915	40330915	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	40330915	G	A	40330915	2	1	53	1	0	0	0	0	0	0	0	1	5703	1161	41	2		2	FBL	19	40330915	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	3724376	40330915	18798068	92	3718											
KLK5	25818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51451945	51451945	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	G	51451945	T	G	51451945	3	3	53	1	0	0	0	0	1	0	0	0	8414	1435	50	5	212	5	KLK5	19	51451945	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	11121030	51451945	7677038	93	3719											
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	58385793	C	T	58385793	3	4	53	1	0	0	0	0	1	0	0	0	18188	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	6933848	58385793	743190	94	3720	43	2									
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	TT	58385799	CC	TT	58385798	3	4	53	1	0	0	0	0	1	0	0	0	18188	842	30	2	1611	2	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-A4-A5Y1-01A-11D-A28G-10	5	58385798	743185	95	3721	43	2									
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	17417493	17417493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	17417493	C	T	17417493	3	4	53	1	0	0	0	0	1	0	0	0	11608	797	28	2	880	2	PCSK2	20	17417493	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		17417493	45608027	96	3722											
CST3	1471	hgsc.bcm.edu	37	20	23618488	23618488	+	Silent	SNP	G	G	A	rs1055084		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	A	23618488	G	A	23618488	2	1	53	1	0	0	0	0	0	0	0	1	3975	1219	43	2		2	CST3	20	23618488	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	6200995	23618488	39407032	97	3723											
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62859303	62859303	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	62859303	A	T	62859303	3	4	53	1	0	0	0	0	1	0	0	0	10113	72	3	5	2716	5	MYT1	20	62859303	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	39240815	62859303	166217	98	3724											
KRTAP26-1	388818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31691828	31691828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	31691828	G	C	31691828	3	2	53	1	0	0	0	0	1	0	0	0	8550	942	33	4	110	4	KRTAP26-1	21	31691828	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		31691828	16438067	99	3725											
ZNF280A	129025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22869192	22869192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	C	22869192	T	C	22869192	3	2	53	1	0	0	0	0	1	0	0	0	17826	1464	51	3	869	3	ZNF280A	22	22869192	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10		22869192	28435374	100	3726											
SELO	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50649114	50649114	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	50649114	C	T	50649114	2	4	53	1	0	0	0	0	0	0	0	1	14031	489	17	2		2	SELO	22	50649114	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	27779922	50649114	655452	101	3727											
CSF2RA	1438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1407702	1407702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	1407702	G	T	1407702	3	4	53	1	0	0	0	0	1	0	0	0	3936	1174	41	4	408	4	CSF2RA	23	1407702	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		1407702	153862858	102	3728											
FRMPD4	9758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	12708337	12708337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	12708337	G	T	12708337	3	4	53	1	0	0	0	0	1	0	0	0	6066	933	33	4	735	4	FRMPD4	23	12708337	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	11300635	12708337	142562223	103	3729											
NAA10	8260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153198018	153198018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	153198018	C	T	153198018	3	4	53	1	0	0	0	0	1	0	0	0	10123	478	17	2	528	2	NAA10	23	153198018	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	140489681	153198018	2072542	104	3730											
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153700940	153700940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	T	153700940	C	T	153700940	3	4	53	1	0	0	0	0	1	0	0	0	12128	536	19	1	5654	1	PLXNA3	23	153700940	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	502922	153700940	1569620	105	3731											
AGRN	375790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	987003	987003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	987003	C	A	987003	3	1	54	1	0	0	0	0	1	0	0	0	397	912	32	4	5667	4	AGRN	1	987003	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10		987003	248263618	1	3732											
KLHL21	9903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6659179	6659179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	6659179	T	C	6659179	3	2	54	1	0	0	0	0	1	0	0	0	8383	1667	58	3	450	3	KLHL21	1	6659179	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	5672176	6659179	242591442	2	3733											
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38343988	38343988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	38343988	A	G	38343988	3	3	54	1	0	0	0	0	1	0	0	0	7762	159	6	3	1228	3	INPP5B	1	38343988	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	31684809	38343988	210906633	3	3734											
ACOT11	26027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	55059680	55059687	+	Frame_Shift_Del	DEL	GCCACCTT	GCCACCTT	-	rs35306628	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GCCACCTT	GCCACCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	-	55059687	GCCACCTT	-	55059680	7	5	54	1	0	1	0	1	0	0	0	0	149	1203	42	0	457	0	ACOT11	1	55059680	Frame_Shift_Del	DEL	GCCACCTT	TCGA-A4-A6HP-01A-11D-A31X-10	16715692	55059680	194190941	4	3735											
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78959108	78959108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	78959108	T	C	78959108	3	2	54	1	0	0	0	0	1	0	0	0	12760	1609	56	3	682	3	PTGFR	1	78959108	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	23899428	78959108	170291513	5	3736	44	2									
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78959111	78959111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	78959111	T	C	78959111	3	2	54	1	0	0	0	0	1	0	0	0	12760	1764	61	3	685	3	PTGFR	1	78959111	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	3	78959111	170291510	6	3737	44	2									
SLC6A17	388662	hgsc.bcm.edu	37	1	110740214	110740214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	110740214	A	G	110740214	3	3	54	1	0	0	0	0	1	0	0	0	14693	72	3	3	1846	3	SLC6A17	1	110740214	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	31781103	110740214	138510407	7	3738											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144874782	144874782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	144874782	C	T	144874782	3	4	54	1	0	0	0	0	1	0	0	0	11650	797	28	2	2274	2	PDE4DIP	1	144874782	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	34134568	144874782	104375839	8	3739											
CELF3	11189	hgsc.bcm.edu	37	1	151678722	151678722	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	151678722	T	C	151678722	2	2	54	1	0	0	0	0	0	0	0	1	3219	1722	60	3		3	CELF3	1	151678722	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	6803940	151678722	97571899	9	3740											
ASPM	259266	broad.mit.edu	37	1	197111690	197111690	+	Silent	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	197111690	G	T	197111690	2	4	54	1	0	0	0	0	0	0	0	1	1056	987	35	4		4	ASPM	1	197111690	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	45432968	197111690	52138931	10	3741											
RNPEP	6051	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	201958580	201958590	+	Frame_Shift_Del	DEL	TTCCAGATGTG	TTCCAGATGTG	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	TTCCAGATGTG	TTCCAGATGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	-	201958590	TTCCAGATGTG	-	201958580	7	5	54	1	0	1	0	1	0	0	0	0	13522	1609	56	0	668	0	RNPEP	1	201958580	Frame_Shift_Del	DEL	TTCCAGATGTG	TCGA-A4-A6HP-01A-11D-A31X-10	4846890	201958580	47292041	11	3742											
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207881585	207881586	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	TG	207881586	GC	TG	207881585	3	4	54	1	0	0	0	0	1	0	0	0	3843	971	34	4	1429	4	CR1L	1	207881585	Missense_Mutation	DNP	GC	TCGA-A4-A6HP-01A-11D-A31X-10	5923005	207881585	41369036	12	3743											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228520936	228520936	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	228520936	G	C	228520936	3	2	54	1	0	0	0	0	1	0	0	0	10819	991	35	4	15994	4	OBSCN	1	228520936	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	20639351	228520936	20729685	13	3744											
FMN2	56776	broad.mit.edu	37	1	240371139	240371139	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	240371139	C	T	240371139	2	4	54	1	0	0	0	0	0	0	0	1	5957	610	22	2		2	FMN2	1	240371139	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	11850203	240371139	8879482	14	3745											
OR2T29	343563	broad.mit.edu	37	1	248722428	248722429	+	Frame_Shift_Ins	INS	-	-	CG	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	CG	248722429	-	CG	248722428	7	5	54	1	0	1	1	0	0	0	0	0	11029	217	8	0	586	0	OR2T29	1	248722428	Frame_Shift_Ins	INS	-	TCGA-A4-A6HP-01A-11D-A31X-10	8351289	248722428	528193	15	3746											
RTN4	57142	broad.mit.edu	37	2	55277140	55277140	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	-	55277140	G	-	55277140	7	5	54	1	0	1	0	1	0	0	0	0	13741	1103	39	0	3355	0	RTN4	2	55277140	Frame_Shift_Del	DEL	G	TCGA-A4-A6HP-01A-11D-A31X-10		55277140	187922233	16	3747											
ANXA4	307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70039804	70039804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	70039804	A	T	70039804	3	4	54	1	0	0	0	0	1	0	0	0	720	101	4	5	523	5	ANXA4	2	70039804	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	14762664	70039804	173159569	17	3748											
MPHOSPH10	10199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	71360588	71360588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	71360588	T	G	71360588	3	3	54	1	0	0	0	0	1	0	0	0	9732	1406	49	5	656	5	MPHOSPH10	2	71360588	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	1320784	71360588	171838785	18	3749											
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86371557	86371557	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	86371557	T	A	86371557	3	1	54	1	0	0	0	0	1	0	0	0	7725	1551	54	5	169	5	IMMT	2	86371557	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	15010969	86371557	156827816	19	3750											
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	130912744	130912744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	130912744	G	A	130912744	3	1	54	1	0	0	0	0	1	0	0	0	14820	1232	43	2	1129	2	SMPD4	2	130912744	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	44541187	130912744	112286629	20	3751											
XIRP2	129446	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168103277	168103277	+	Missense_Mutation	SNP	T	T	A	rs200235198	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	168103277	T	A	168103277	3	1	54	1	0	0	0	0	1	0	0	0	17442	1580	55	5	5405	5	XIRP2	2	168103277	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	37190533	168103277	75096096	21	3752											
DNAJC10	54431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	183594619	183594619	+	Silent	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	183594619	G	T	183594619	2	4	54	1	0	0	0	0	0	0	0	1	4631	1277	45	4		4	DNAJC10	2	183594619	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	15491342	183594619	59604754	22	3753											
SF3B1	23451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198285205	198285205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	198285205	T	A	198285205	3	1	54	1	0	0	0	0	1	0	0	0	14162	1609	56	5	3664	5	SF3B1	2	198285205	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	14690586	198285205	44914168	23	3754	45	2									
SF3B1	23451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198285207	198285207	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	198285207	T	C	198285207	2	2	54	1	0	0	0	0	0	0	0	1	14162	1838	64	3		3	SF3B1	2	198285207	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	2	198285207	44914166	24	3755	45	2									
HSPE1	3336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198365881	198365881	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	198365881	A	G	198365881	2	3	54	1	0	0	0	0	0	0	0	1	7436	291	11	3		3	HSPE1	2	198365881	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	80674	198365881	44833492	25	3756											
NIF3L1	60491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201768315	201768315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	201768315	C	A	201768315	3	1	54	1	0	0	0	0	1	0	0	0	10423	681	24	4	1070	4	NIF3L1	2	201768315	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	3402434	201768315	41431058	26	3757											
RNF25	64320	broad.mit.edu	37	2	219529245	219529245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	219529245	G	A	219529245	3	1	54	1	0	0	0	0	1	0	0	0	13498	1087	38	1	568	1	RNF25	2	219529245	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	17760930	219529245	23670128	27	3758											
UGT1A9	54600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	234580827	234580828	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	234580828	-	T	234580827	7	5	54	1	0	1	1	0	0	0	0	0	16964	680	24	0	249	0	UGT1A9	2	234580827	Frame_Shift_Ins	INS	-	TCGA-A4-A6HP-01A-11D-A31X-10	15051582	234580827	8618546	28	3759											
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47374712	47374713	+	Missense_Mutation	DNP	GC	GC	TA	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	TA	47374713	GC	TA	47374712	3	4	54	1	0	0	0	0	1	0	0	0	8380	962	34	4	684	4	KLHL18	3	47374712	Missense_Mutation	DNP	GC	TCGA-A4-A6HP-01A-11D-A31X-10		47374712	150647718	29	3760											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69072460	69072460	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	69072460	T	C	69072460	2	2	54	1	0	0	0	0	0	0	0	1	16240	1838	64	3		3	TMF1	3	69072460	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	21697748	69072460	128949970	30	3761											
BBX	56987	broad.mit.edu	37	3	107492048	107492048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	107492048	G	A	107492048	3	1	54	1	0	0	0	0	1	0	0	0	1343	1087	38	1	1510	1	BBX	3	107492048	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	38419588	107492048	90530382	31	3762											
NDUFB4	4710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	120320001	120320001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	120320001	A	G	120320001	3	3	54	1	0	0	0	0	1	0	0	0	10290	101	4	3	230	3	NDUFB4	3	120320001	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	12827953	120320001	77702429	32	3763											
NMD3	51068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160964158	160964158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	160964158	C	T	160964158	3	4	54	1	0	0	0	0	1	0	0	0	10495	913	32	2	1094	2	NMD3	3	160964158	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	40644157	160964158	37058272	33	3764											
PARL	55486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	183602604	183602604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	183602604	A	G	183602604	3	3	54	1	0	0	0	0	1	0	0	0	11458	188	7	3	1148	3	PARL	3	183602604	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	22638446	183602604	14419826	34	3765											
MUC4	4585	hgsc.bcm.edu	37	3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T	rs11915935		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	195505787	C	T	195505787	3	4	54	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195505787	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	11903183	195505787	2516643	35	3766	46	2	1	10		5	4	12185	N	T_G_C	1.652918e-05
MUC4	4585	hgsc.bcm.edu	37	3	195505790	195505790	+	Missense_Mutation	SNP	G	G	C	rs11928301	byhapmap	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	195505790	G	C	195505790	3	2	54	1	0	0	0	0	1	0	0	0	9985	1290	45	4		4	MUC4	3	195505790	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	3	195505790	2516640	36	3767	46	2	1	10		5	4	12185	N	T_G_C	1.652918e-05
MUC4	4585	broad.mit.edu	37	3	195515038	195515038	+	Missense_Mutation	SNP	G	G	A	rs201206859		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	195515038	G	A	195515038	3	1	54	1	0	0	0	0	1	0	0	0	9985	1000	35	2		2	MUC4	3	195515038	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	9248	195515038	2507392	37	3768			1	10		5	4	12185	N	T_G_C	1.652918e-05
MUC4	4585	broad.mit.edu	37	3	195515052	195515052	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	195515052	G	C	195515052	3	2	54	1	0	0	0	0	1	0	0	0	9985	1136	40	4		4	MUC4	3	195515052	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	14	195515052	2507378	38	3769			1	10		5	4	12185	N	T_G_C	1.652918e-05
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195517971	195517971	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	195517971	T	A	195517971	3	1	54	1	0	0	0	0	1	0	0	0	9985	1838	64	5		5	MUC4	3	195517971	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	2919	195517971	2504459	39	3770			1	10		5	4	12185	N	T_G_C	1.652918e-05
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	436719	436719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	436719	A	G	436719	3	3	54	1	0	0	0	0	1	0	0	0	18134	246	9	3	1238	3	ZNF721	4	436719	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		436719	190717557	40	3771											
ALPK1	80216	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113303701	113303701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	113303701	A	T	113303701	3	4	54	1	0	0	0	0	1	0	0	0	544	188	7	5	275	5	ALPK1	4	113303701	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	112866982	113303701	77850575	41	3772											
TMEM192	201931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	166000935	166000935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	166000935	G	T	166000935	3	4	54	1	0	0	0	0	1	0	0	0	16127	991	35	4	128	4	TMEM192	4	166000935	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	52697234	166000935	25153341	42	3773											
PPARGC1B	133522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149213062	149213062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	149213062	G	A	149213062	3	1	54	1	0	0	0	0	1	0	0	0	12308	1145	40	1	1451	1	PPARGC1B	5	149213062	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		149213062	31702198	43	3774											
GALNT10	55568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153755929	153755929	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	153755929	C	T	153755929	4	4	54	1	0	0	0	0	0	1	0	0	6215	644	23	1	679	1	GALNT10	5	153755929	Nonsense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	4542867	153755929	27159331	44	3775											
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	173317154	173317154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	173317154	T	G	173317154	3	3	54	1	0	0	0	0	1	0	0	0	3805	1722	60	5	420	5	CPEB4	5	173317154	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	19561225	173317154	7598106	45	3776											
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176018324	176018324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	176018324	G	A	176018324	3	1	54	1	0	0	0	0	1	0	0	0	3121	1130	39	1	3763	1	CDHR2	5	176018324	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	2701170	176018324	4896936	46	3777											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7583589	7583589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	7583589	G	A	7583589	3	1	54	1	0	0	0	0	1	0	0	0	4783	1261	44	2	6188	2	DSP	6	7583589	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		7583589	163531478	47	3778											
TMEM170B	100113407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	11575733	11575733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	11575733	G	T	11575733	3	4	54	1	0	0	0	0	1	0	0	0	16099	1203	42	4	348	4	TMEM170B	6	11575733	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	3992144	11575733	159539334	48	3779											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	73017054	73017055	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	-	73017055	AT	-	73017054	7	5	54	1	0	1	0	1	0	0	0	0	13380	333	12	0	4213	0	RIMS1	6	73017054	Frame_Shift_Del	DEL	AT	TCGA-A4-A6HP-01A-11D-A31X-10	61441321	73017054	98098013	49	3780											
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139135653	139135653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	139135653	T	C	139135653	3	2	54	1	0	0	0	0	1	0	0	0	4904	1406	49	3	98	3	ECT2L	6	139135653	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	66118599	139135653	31979414	50	3781											
CITED2	10370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139694869	139694869	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	139694869	A	G	139694869	2	3	54	1	0	0	0	0	0	0	0	1	3442	214	8	3		3	CITED2	6	139694869	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	559216	139694869	31420198	51	3782											
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	4841357	4841357	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	4841357	G	A	4841357	2	1	54	1	0	0	0	0	0	0	0	1	13010	1074	38	1		1	RADIL	7	4841357	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		4841357	154297306	52	3783											
ZAN	7455	broad.mit.edu	37	7	100349675	100349675	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	100349675	T	C	100349675	2	2	54	1	0	0	0	0	0	0	0	1	17525	1829	64	3		3	ZAN	7	100349675	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	95508318	100349675	58788988	53	3784											
ZAN	7455	broad.mit.edu	37	7	100350033	100350033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	100350033	T	C	100350033	3	2	54	1	0	0	0	0	1	0	0	0	17525	1551	54	3	2355	3	ZAN	7	100350033	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	358	100350033	58788630	54	3785											
RINT1	60561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	105189036	105189036	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	-	105189036	A	-	105189036	7	5	54	1	0	1	0	1	0	0	0	0	13389	246	9	0	901	0	RINT1	7	105189036	Frame_Shift_Del	DEL	A	TCGA-A4-A6HP-01A-11D-A31X-10	4839003	105189036	53949627	55	3786											
KEL	3792	broad.mit.edu	37	7	142640923	142640923	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	142640923	C	T	142640923	2	4	54	1	0	0	0	0	0	0	0	1	8149	494	18	2		2	KEL	7	142640923	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	37451887	142640923	16497740	56	3787											
SPAG11B	10407	bcgsc.ca	37	8	7308688	7308688	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	7308688	G	T	7308688	4	4	54	1	0	0	0	0	0	1	0	0	14990	1294	45	4	276	4	SPAG11B	8	7308688	Nonsense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		7308688	139055334	57	3788											
TNKS	8658	broad.mit.edu	37	8	9605598	9605598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	9605598	C	T	9605598	3	4	54	1	0	0	0	0	1	0	0	0	16331	768	27	1	2778	1	TNKS	8	9605598	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	2296910	9605598	136758424	58	3789											
SGK196	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42977953	42977953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	42977953	A	G	42977953	3	3	54	1	0	0	0	0	1	0	0	0	14221	304	11	3	992	3	SGK196	8	42977953	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	33372355	42977953	103386069	59	3790											
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124992806	124992806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	124992806	G	A	124992806	3	1	54	1	0	0	0	0	1	0	0	0	5822	1175	41	2	1203	2	FER1L6	8	124992806	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	82014853	124992806	21371216	60	3791											
AQP3	360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	33443353	33443354	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	33443354	-	A	33443353	7	5	54	1	0	1	1	0	0	0	0	0	827	933	33	0	555	0	AQP3	9	33443353	Frame_Shift_Ins	INS	-	TCGA-A4-A6HP-01A-11D-A31X-10		33443353	107770078	61	3792											
ZBTB5	9925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37441549	37441549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	37441549	G	T	37441549	3	4	54	1	0	0	0	0	1	0	0	0	17563	991	35	4	1037	4	ZBTB5	9	37441549	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	3998196	37441549	103771882	62	3793											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107578436	107578436	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	107578436	C	T	107578436	2	4	54	1	0	0	0	0	0	0	0	1	28	871	31	1		1	ABCA1	9	107578436	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	70136887	107578436	33634995	63	3794											
PTPN3	5774	broad.mit.edu	37	9	112185015	112185015	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	112185015	A	G	112185015	2	3	54	1	0	0	0	0	0	0	0	1	12802	291	11	3		3	PTPN3	9	112185015	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	4606579	112185015	29028416	64	3795											
COQ4	51117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131095205	131095205	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	131095205	G	A	131095205	2	1	54	1	0	0	0	0	0	0	0	1	3749	1045	37	1		1	COQ4	9	131095205	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	18910190	131095205	10118226	65	3796											
SURF2	6835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136227264	136227264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	136227264	G	T	136227264	3	4	54	1	0	0	0	0	1	0	0	0	15416	1000	35	4	659	4	SURF2	9	136227264	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	5132059	136227264	4986167	66	3797											
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139407915	139407915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	139407915	G	T	139407915	3	4	54	1	0	0	0	0	1	0	0	0	10554	1000	35	4	5469	4	NOTCH1	9	139407915	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	3180651	139407915	1805516	67	3798											
BMS1	9790	broad.mit.edu;bcgsc.ca	37	10	43294061	43294061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	43294061	G	T	43294061	3	4	54	1	0	0	0	0	1	0	0	0	1472	1241	43	4	2277	4	BMS1	10	43294061	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		43294061	92240686	68	3799											
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98741939	98741939	+	Silent	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	98741939	T	G	98741939	2	3	54	1	0	0	0	0	0	0	0	1	1591	1538	54	5		5	C10orf12	10	98741939	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	55447878	98741939	36792808	69	3800											
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103906723	103906723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	103906723	G	A	103906723	3	1	54	1	0	0	0	0	1	0	0	0	12420	1087	38	1	4008	1	PPRC1	10	103906723	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	5164784	103906723	31628024	70	3801											
PDCD4	27250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112655819	112655819	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	112655819	A	G	112655819	2	3	54	1	0	0	0	0	0	0	0	1	11628	40	2	3		3	PDCD4	10	112655819	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	8749096	112655819	22878928	71	3802											
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63065116	63065116	+	Silent	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	63065116	A	T	63065116	2	4	54	1	0	0	0	0	0	0	0	1	14454	291	11	5		5	SLC22A10	11	63065116	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		63065116	71941400	72	3803											
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63071636	63071636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	63071636	A	G	63071636	3	3	54	1	0	0	0	0	1	0	0	0	14454	391	14	3	1372	3	SLC22A10	11	63071636	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	6520	63071636	71934880	73	3804											
UNC93B1	81622	broad.mit.edu	37	11	67763107	67763107	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	67763107	A	G	67763107	2	3	54	1	0	0	0	0	0	0	0	1	17009	156	6	3		3	UNC93B1	11	67763107	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	4691471	67763107	67243409	74	3805											
MAML2	84441	broad.mit.edu	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	95825254	C	T	95825254	2	4	54	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825254	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	28062147	95825254	39181262	75	3806											
NPAT	4863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108043550	108043550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	108043550	C	T	108043550	3	4	54	1	0	0	0	0	1	0	0	0	10573	826	29	2	2146	2	NPAT	11	108043550	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	12218296	108043550	26962966	76	3807											
BCL9L	283149	hgsc.bcm.edu	37	11	118773516	118773516	+	Silent	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	118773516	C	A	118773516	2	1	54	1	0	0	0	0	0	0	0	1	1382	639	23	4		4	BCL9L	11	118773516	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	10729966	118773516	16233000	77	3808											
RECQL	5965	broad.mit.edu	37	12	21630777	21630777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	21630777	G	T	21630777	3	4	54	1	0	0	0	0	1	0	0	0	13214	1029	36	4	1158	4	RECQL	12	21630777	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		21630777	112221118	78	3809											
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	23757377	23757377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	23757377	A	G	23757377	3	3	54	1	0	0	0	0	1	0	0	0	14967	333	12	3	1221	3	SOX5	12	23757377	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	2126600	23757377	110094518	79	3810											
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49168249	49168249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	49168249	G	A	49168249	3	1	54	1	0	0	0	0	1	0	0	0	298	1319	46	2	1323	2	ADCY6	12	49168249	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	25410872	49168249	84683646	80	3811											
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54447788	54447788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	54447788	T	A	54447788	3	1	54	1	0	0	0	0	1	0	0	0	7320	1522	53	5	84	5	HOXC4	12	54447788	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	5279539	54447788	79404107	81	3812											
NAB2	4665	broad.mit.edu	37	12	57485520	57485520	+	Silent	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	57485520	T	G	57485520	2	3	54	1	0	0	0	0	0	0	0	1	10139	1683	59	5		5	NAB2	12	57485520	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	3037732	57485520	76366375	82	3813											
TPH2	121278	broad.mit.edu	37	12	72425407	72425407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	72425407	G	A	72425407	3	1	54	1	0	0	0	0	1	0	0	0	16414	1174	41	2	1447	2	TPH2	12	72425407	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	14939887	72425407	61426488	83	3814											
RNF10	9921	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120984362	120984362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	120984362	C	A	120984362	3	1	54	1	0	0	0	0	1	0	0	0	13435	709	25	4	318	4	RNF10	12	120984362	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	48558955	120984362	12867533	84	3815											
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	131471648	131471648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	131471648	T	G	131471648	3	3	54	1	0	0	0	0	1	0	0	0	6650	1812	63	5	521	5	GPR133	12	131471648	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	10487286	131471648	2380247	85	3816											
COG6	57511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	40251678	40251678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	40251678	A	G	40251678	3	3	54	1	0	0	0	0	1	0	0	0	3664	304	11	3	520	3	COG6	13	40251678	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		40251678	74918200	86	3817											
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	98667795	98667795	+	Silent	SNP	A	A	T	rs61750357	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	98667795	A	T	98667795	2	4	54	1	0	0	0	0	0	0	0	1	7803	349	13	5		5	IPO5	13	98667795	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	58416117	98667795	16502083	87	3818											
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu	37	13	113474213	113474213	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	113474213	G	A	113474213	5	1	54	1	0	0	0	0	0	0	1	0	1119	1014	35	2	704	2	ATP11A	13	113474213	Splice_Site	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	14806418	113474213	1695665	88	3819											
LTBP2	4053	broad.mit.edu;ucsc.edu	37	14	74970233	74970233	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	74970233	G	A	74970233	2	1	54	1	0	0	0	0	0	0	0	1	9081	1311	46	2		2	LTBP2	14	74970233	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		74970233	32379307	89	3820											
ZSCAN29	146050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43653718	43653718	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	43653718	T	C	43653718	2	2	54	1	0	0	0	0	0	0	0	1	18248	1722	60	3		3	ZSCAN29	15	43653718	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10		43653718	58877674	90	3821											
FAM154B	283726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	82575198	82575198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	82575198	C	A	82575198	3	1	54	1	0	0	0	0	1	0	0	0	5468	478	17	4	1002	4	FAM154B	15	82575198	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	38921480	82575198	19956194	91	3822											
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85407685	85407685	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	85407685	G	A	85407685	2	1	54	1	0	0	0	0	0	0	0	1	546	1364	48	2		2	ALPK3	15	85407685	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	2832487	85407685	17123707	92	3823											
NDUFB10	4716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2011289	2011289	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	2011289	A	T	2011289	3	4	54	1	0	0	0	0	1	0	0	0	10286	275	10	5	272	5	NDUFB10	16	2011289	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		2011289	88343464	93	3824											
TRAP1	10131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	3712967	3712967	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	3712967	G	A	3712967	2	1	54	1	0	0	0	0	0	0	0	1	16467	1130	39	1		1	TRAP1	16	3712967	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	1701678	3712967	86641786	94	3825											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	3980188	3980189	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	3980189	-	T	3980188	7	5	54	1	0	1	1	0	0	0	0	0	18267	565	20	0	5944	0	ZZEF1	17	3980188	Frame_Shift_Ins	INS	-	TCGA-A4-A6HP-01A-11D-A31X-10		3980188	77215022	95	3826											
KDM6B	23135	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7748926	7748926	+	Silent	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	7748926	C	A	7748926	2	1	54	1	0	0	0	0	0	0	0	1	8145	610	22	4		4	KDM6B	17	7748926	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	3768738	7748926	73446284	96	3827											
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	12898190	12898190	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	12898190	A	G	12898190	2	3	54	1	0	0	0	0	0	0	0	1	5049	273	10	3		3	ELAC2	17	12898190	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	5149264	12898190	68297020	97	3828											
TBC1D28	254272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18541949	18541949	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	18541949	A	G	18541949	2	3	54	1	0	0	0	0	0	0	0	1	15629	456	16	3		3	TBC1D28	17	18541949	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	5643759	18541949	62653261	98	3829											
MSL1	339287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38282491	38282491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	38282491	A	G	38282491	3	3	54	1	0	0	0	0	1	0	0	0	9884	43	2	3	37	3	MSL1	17	38282491	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	19740542	38282491	42912719	99	3830											
HOXB9	3219	broad.mit.edu	37	17	46703276	46703277	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	CT	46703277	TC	CT	46703276	3	2	54	1	0	0	0	0	1	0	0	0	7315	1551	54	3	404	3	HOXB9	17	46703276	Missense_Mutation	DNP	TC	TCGA-A4-A6HP-01A-11D-A31X-10	8420785	46703276	34491934	100	3831											
C17orf64	124773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58503225	58503225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	58503225	G	A	58503225	3	1	54	1	0	0	0	0	1	0	0	0	1874	1174	41	2	139	2	C17orf64	17	58503225	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	11799949	58503225	22691985	101	3832											
FHOD3	80206	broad.mit.edu	37	18	34261469	34261469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	34261469	A	G	34261469	3	3	54	1	0	0	0	0	1	0	0	0	5890	295	11	3	1427	3	FHOD3	18	34261469	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		34261469	43815779	102	3833											
PIAS2	9063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44416377	44416377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	44416377	G	A	44416377	3	1	54	1	0	0	0	0	1	0	0	0	11883	1261	44	2	819	2	PIAS2	18	44416377	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	10154908	44416377	33660871	103	3834											
PRAM1	84106	ucsc.edu	37	19	8555985	8555985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	8555985	T	C	8555985	3	2	54	1	0	0	0	0	1	0	0	0	12433	1594	55	3	403	3	PRAM1	19	8555985	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10		8555985	50572998	104	3835											
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15226103	15226103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	15226103	A	G	15226103	3	3	54	1	0	0	0	0	1	0	0	0	7722	101	4	3	43	3	ILVBL	19	15226103	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	6670118	15226103	43902880	105	3836											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31040126	31040126	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	31040126	C	G	31040126	3	3	54	1	0	0	0	0	1	0	0	0	17986	477	17	4	3610	4	ZNF536	19	31040126	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	15814023	31040126	28088857	106	3837											
ZNF146	7705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36727612	36727612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	36727612	C	A	36727612	3	1	54	1	0	0	0	0	1	0	0	0	17745	506	18	4	272	4	ZNF146	19	36727612	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	5687486	36727612	22401371	107	3838											
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu	37	19	47569625	47569625	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	-	47569625	G	-	47569625	7	5	54	1	0	1	0	1	0	0	0	0	17582	987	35	0	15	0	ZC3H4	19	47569625	Frame_Shift_Del	DEL	G	TCGA-A4-A6HP-01A-11D-A31X-10	10842013	47569625	11559358	108	3839											
GYS1	2997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49485593	49485593	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	49485593	A	G	49485593	2	3	54	1	0	0	0	0	0	0	0	1	6919	359	13	3		3	GYS1	19	49485593	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	1915968	49485593	9643390	109	3840											
TMEM86B	255043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55740079	55740079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	55740079	T	C	55740079	3	2	54	1	0	0	0	0	1	0	0	0	16221	1792	62	3	661	3	TMEM86B	19	55740079	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	6254486	55740079	3388904	110	3841											
POLR3F	10621	broad.mit.edu	37	20	18448195	18448195	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	18448195	G	A	18448195	2	1	54	1	0	0	0	0	0	0	0	1	12240	1103	39	1		1	POLR3F	20	18448195	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		18448195	44577325	111	3842											
HM13	81502	ucsc.edu;bcgsc.ca	37	20	30156952	30156952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	30156952	C	T	30156952	3	4	54	1	0	0	0	0	1	0	0	0	7224	768	27	1	1332	1	HM13	20	30156952	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	11708757	30156952	32868568	112	3843											
AHCY	191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32878681	32878681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	T	32878681	C	T	32878681	3	4	54	1	0	0	0	0	1	0	0	0	409	913	32	2	696	2	AHCY	20	32878681	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	2721729	32878681	30146839	113	3844											
KIAA1755	85449	broad.mit.edu	37	20	36874404	36874404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	36874404	T	C	36874404	3	2	54	1	0	0	0	0	1	0	0	0	8264	1435	50	3	3526	3	KIAA1755	20	36874404	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	3995723	36874404	26151116	114	3845											
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	45217868	45217868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	45217868	A	G	45217868	3	3	54	1	0	0	0	0	1	0	0	0	14406	449	16	3	889	3	SLC13A3	20	45217868	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	8343464	45217868	17807652	115	3846											
C21orf33	8209	broad.mit.edu;bcgsc.ca	37	21	45563146	45563146	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	45563146	T	G	45563146	3	3	54	1	0	0	0	0	1	0	0	0	2127	1696	59	5	603	5	C21orf33	21	45563146	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10		45563146	2566749	116	3847											
COL18A1	80781	broad.mit.edu	37	21	46911183	46911183	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	-	46911183	C	-	46911183	7	5	54	1	0	1	0	1	0	0	0	0	3677	726	26	0	3553	0	COL18A1	21	46911183	Frame_Shift_Del	DEL	C	TCGA-A4-A6HP-01A-11D-A31X-10	1348037	46911183	1218712	117	3848											
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30403186	30403186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	30403186	A	C	30403186	3	2	54	1	0	0	0	0	1	0	0	0	9952	217	8	5	785	5	MTMR3	22	30403186	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		30403186	20901380	118	3849											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37898635	37898635	+	Silent	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	37898635	C	G	37898635	2	3	54	1	0	0	0	0	0	0	0	1	2646	610	22	4		4	CARD10	22	37898635	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	7495449	37898635	13405931	119	3850											
PNPLA4	8228	broad.mit.edu	37	X	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	G	7868821	A	G	7868821	3	3	54	1	0	0	0	0	1	0	0	0	12174	72	3	3	97	3	PNPLA4	23	7868821	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		7868821	147401739	120	3851											
FAM122C	159091	broad.mit.edu	37	X	133941690	133941690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	A	133941690	G	A	133941690	3	1	54	1	0	0	0	0	1	0	0	0	5425	1203	42	2	176	2	FAM122C	23	133941690	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	126072869	133941690	21328870	121	3852											
SLC6A8	6535	broad.mit.edu	37	X	152958793	152958793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	C	152958793	T	C	152958793	3	2	54	1	0	0	0	0	1	0	0	0	14703	1522	53	3	1010	3	SLC6A8	23	152958793	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	19017103	152958793	2311767	122	3853											
HDAC1	3065	hgsc.bcm.edu;ucsc.edu	37	1	32797118	32797118	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	32797118	C	G	32797118	3	3	55	1	0	0	0	0	1	0	0	0	7011	825	29	4	1061	4	HDAC1	1	32797118	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10		32797118	216453503	1	3854											
CYP2J2	1573	hgsc.bcm.edu	37	1	60392210	60392210	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	60392210	A	T	60392210	3	4	55	1	0	0	0	0	1	0	0	0	4174	202	7	5	1335	5	CYP2J2	1	60392210	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	27595092	60392210	188858411	2	3855											
TARBP1	6894	hgsc.bcm.edu	37	1	234553902	234553902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	234553902	T	C	234553902	3	2	55	1	0	0	0	0	1	0	0	0	15567	1512	53	3	1268	3	TARBP1	1	234553902	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	174161692	234553902	14696719	3	3856											
ANAPC1	64682	hgsc.bcm.edu;ucsc.edu	37	2	112638368	112638370	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	-	112638370	ATC	-	112638368	7	5	55	1	0	1	0	1	0	0	0	0	598	101	4	0	5987	0	ANAPC1	2	112638368	In_Frame_Del	DEL	ATC	TCGA-AK-3425-01A-02D-1361-10		112638368	130561005	4	3857											
BIN1	274	hgsc.bcm.edu	37	2	127808049	127808049	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	127808049	A	C	127808049	3	2	55	1	0	0	0	0	1	0	0	0	1432	304	11	5	167	5	BIN1	2	127808049	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	15169681	127808049	115391324	5	3858											
DNAH7	56171	hgsc.bcm.edu	37	2	196753531	196753531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	196753531	G	A	196753531	3	1	55	1	0	0	0	0	1	0	0	0	4608	1232	43	2	6989	2	DNAH7	2	196753531	Missense_Mutation	SNP	G	TCGA-AK-3425-01A-02D-1361-10	68945482	196753531	46445842	6	3859											
GLB1L	79411	hgsc.bcm.edu	37	2	220102299	220102299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	220102299	A	G	220102299	3	3	55	1	0	0	0	0	1	0	0	0	6435	304	11	3	348	3	GLB1L	2	220102299	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	23348768	220102299	23097074	7	3860											
PBRM1	55193	ucsc.edu	37	3	52676048	52676048	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	C	-	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	-	52676048	C	-	52676048	7	5	55	1	0	1	0	1	0	0	0	0	11498	565	20	0	3975	0	PBRM1	3	52676048	Frame_Shift_Del	DEL	C	TCGA-AK-3425-01A-02D-1361-10		52676048	145346382	8	3861											
SI	6476	hgsc.bcm.edu;ucsc.edu	37	3	164741459	164741459	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	164741459	G	A	164741459	4	1	55	1	0	0	0	0	0	1	0	0	14310	1357	47	2	2577	2	SI	3	164741459	Nonsense_Mutation	SNP	G	TCGA-AK-3425-01A-02D-1361-10	112065411	164741459	33280971	9	3862											
GYPA	2993	hgsc.bcm.edu	37	4	145038027	145038027	+	Missense_Mutation	SNP	C	C	T	rs146754148	bycluster;byfrequency;by1000genomes	TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	145038027	C	T	145038027	3	4	55	1	0	0	0	0	1	0	0	0	6915	652	23	1	127	1	GYPA	4	145038027	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10		145038027	46116249	10	3863											
KIAA1430	57587	hgsc.bcm.edu;ucsc.edu	37	4	186085307	186085307	+	Silent	SNP	C	C	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	186085307	C	A	186085307	2	1	55	1	0	0	0	0	0	0	0	1	8239	813	29	4		4	KIAA1430	4	186085307	Silent	SNP	C	TCGA-AK-3425-01A-02D-1361-10	41047280	186085307	5068969	11	3864											
IL6ST	3572	hgsc.bcm.edu	37	5	55264141	55264141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	55264141	T	C	55264141	3	2	55	1	0	0	0	0	1	0	0	0	7710	1725	60	3	2354	3	IL6ST	5	55264141	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10		55264141	125651119	12	3865											
SLU7	10569	hgsc.bcm.edu	37	5	159840612	159840612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	159840612	C	T	159840612	3	4	55	1	0	0	0	0	1	0	0	0	14768	603	21	2	1387	2	SLU7	5	159840612	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	104576471	159840612	21074648	13	3866											
FLT4	2324	hgsc.bcm.edu	37	5	180053263	180053263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	180053263	T	A	180053263	3	1	55	1	0	0	0	0	1	0	0	0	5951	1638	57	5	3081	5	FLT4	5	180053263	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	20212651	180053263	861997	14	3867											
FTSJD2	23070	hgsc.bcm.edu	37	6	37429369	37429369	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	37429369	C	G	37429369	3	3	55	1	0	0	0	0	1	0	0	0	6098	709	25	4	1178	4	FTSJD2	6	37429369	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10		37429369	133685698	15	3868											
SLC22A7	10864	hgsc.bcm.edu	37	6	43271898	43271898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	43271898	T	C	43271898	3	2	55	1	0	0	0	0	1	0	0	0	14472	1580	55	3	1542	3	SLC22A7	6	43271898	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	5842529	43271898	127843169	16	3869											
CD2AP	23607	hgsc.bcm.edu	37	6	47541956	47541956	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	47541956	G	C	47541956	3	2	55	1	0	0	0	0	1	0	0	0	2996	1029	36	4	720	4	CD2AP	6	47541956	Missense_Mutation	SNP	G	TCGA-AK-3425-01A-02D-1361-10	4270058	47541956	123573111	17	3870											
SERAC1	84947	hgsc.bcm.edu	37	6	158565367	158565367	+	Silent	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	158565367	A	G	158565367	2	3	55	1	0	0	0	0	0	0	0	1	14087	11	1	3		3	SERAC1	6	158565367	Silent	SNP	A	TCGA-AK-3425-01A-02D-1361-10	111023411	158565367	12549700	18	3871											
STK31	56164	hgsc.bcm.edu;ucsc.edu	37	7	23821077	23821077	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	23821077	G	T	23821077	4	4	55	1	0	0	0	0	0	1	0	0	15308	943	33	4	2067	4	STK31	7	23821077	Nonsense_Mutation	SNP	G	TCGA-AK-3425-01A-02D-1361-10		23821077	135317586	19	3872											
SMO	6608	hgsc.bcm.edu	37	7	128849218	128849218	+	Silent	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	128849218	C	G	128849218	2	3	55	1	0	0	0	0	0	0	0	1	14813	697	25	4		4	SMO	7	128849218	Silent	SNP	C	TCGA-AK-3425-01A-02D-1361-10	105028141	128849218	30289445	20	3873											
TSGA14	0	hgsc.bcm.edu;ucsc.edu	37	7	130056770	130056770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	130056770	C	G	130056770	3	3	55	1	0	0	0	0	1	0	0	0	16632	912	32	4	1022	4	TSGA14	7	130056770	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	1207552	130056770	29081893	21	3874											
KIAA1549	57670	hgsc.bcm.edu;ucsc.edu	37	7	138556052	138556052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	138556052	G	A	138556052	3	1	55	1	0	0	0	0	1	0	0	0	8251	1319	46	2	1482	2	KIAA1549	7	138556052	Missense_Mutation	SNP	G	TCGA-AK-3425-01A-02D-1361-10	8499282	138556052	20582611	22	3875											
FAM115C	285966	hgsc.bcm.edu	37	7	143400301	143400301	+	Missense_Mutation	SNP	A	G	G	rs80035595		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	143400301	G	G	143400301	3	3	55	1	0	0	0	0	1	0	0	0	5410	391	14	3	216	3	FAM115C	7	143400301	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	4844249	143400301	15738362	23	3876											
NUB1	51667	hgsc.bcm.edu;ucsc.edu	37	7	151042440	151042440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	151042440	C	A	151042440	3	1	55	1	0	0	0	0	1	0	0	0	10721	710	25	4	7	4	NUB1	7	151042440	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	7642139	151042440	8096223	24	3877											
PSD3	23362	hgsc.bcm.edu	37	8	18662356	18662356	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	18662356	T	G	18662356	3	3	55	1	0	0	0	0	1	0	0	0	12658	1696	59	5	1504	5	PSD3	8	18662356	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10		18662356	127701666	25	3878											
CCDC25	55246	hgsc.bcm.edu;ucsc.edu	37	8	27622729	27622729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	27622729	T	C	27622729	3	2	55	1	0	0	0	0	1	0	0	0	2802	1841	64	3	590	3	CCDC25	8	27622729	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	8960373	27622729	118741293	26	3879											
ECM2	1842	hgsc.bcm.edu	37	9	95267851	95267851	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	95267851	A	T	95267851	3	4	55	1	0	0	0	0	1	0	0	0	4900	359	13	5	687	5	ECM2	9	95267851	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10		95267851	45945580	27	3880											
OLFM1	10439	hgsc.bcm.edu	37	9	137982084	137982084	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	137982084	C	G	137982084	3	3	55	1	0	0	0	0	1	0	0	0	10859	913	32	4	146	4	OLFM1	9	137982084	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	42714233	137982084	3231347	28	3881											
DNTT	1791	hgsc.bcm.edu	37	10	98064300	98064300	+	Missense_Mutation	SNP	C	C	G	rs148791733	byfrequency;alternate_allele	TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	98064300	C	G	98064300	3	3	55	1	0	0	0	0	1	0	0	0	4682	507	18	4	48	4	DNTT	10	98064300	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10		98064300	37470447	29	3882											
C10orf118	55088	hgsc.bcm.edu;ucsc.edu	37	10	115895715	115895715	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	115895715	C	G	115895715	3	3	55	1	0	0	0	0	1	0	0	0	1589	864	30	4	1281	4	C10orf118	10	115895715	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	17831415	115895715	19639032	30	3883											
MUC6	4588	hgsc.bcm.edu	37	11	1016991	1016991	+	Missense_Mutation	SNP	T	T	G	rs74788171	bycluster;byfrequency	TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	1016991	T	G	1016991	3	3	55	1	0	0	0	0	1	0	0	0	9987	1725	60	5	1521	5	MUC6	11	1016991	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10		1016991	133989525	31	3884											
STIM1	6786	hgsc.bcm.edu;ucsc.edu	37	11	3988829	3988829	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	3988829	C	G	3988829	3	3	55	1	0	0	0	0	1	0	0	0	15295	565	20	4	193	4	STIM1	11	3988829	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	2971838	3988829	131017687	32	3885											
OR52R1	119695	hgsc.bcm.edu	37	11	4825594	4825594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	4825594	C	G	4825594	3	3	55	1	0	0	0	0	1	0	0	0	11138	623	22	4	933	4	OR52R1	11	4825594	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	836765	4825594	130180922	33	3886											
EIF4G2	1982	hgsc.bcm.edu	37	11	10825488	10825488	+	Silent	SNP	A	A	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	10825488	A	C	10825488	2	2	55	1	0	0	0	0	0	0	0	1	5039	117	5	5		5	EIF4G2	11	10825488	Silent	SNP	A	TCGA-AK-3425-01A-02D-1361-10	5999894	10825488	124181028	34	3887											
EXT2	2132	hgsc.bcm.edu	37	11	44130770	44130770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	44130770	T	G	44130770	3	3	55	1	0	0	0	0	1	0	0	0	5326	1821	63	5	672	5	EXT2	11	44130770	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	33305282	44130770	90875746	35	3888											
ITPR2	3709	hgsc.bcm.edu;ucsc.edu	37	12	26703220	26703220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	26703220	A	G	26703220	3	3	55	1	0	0	0	0	1	0	0	0	7928	372	13	3	3156	3	ITPR2	12	26703220	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10		26703220	107148675	36	3889											
DIP2B	57609	hgsc.bcm.edu	37	12	51072503	51072503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	51072503	C	G	51072503	3	3	55	1	0	0	0	0	1	0	0	0	4530	711	25	4	988	4	DIP2B	12	51072503	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	24369283	51072503	82779392	37	3890											
CPSF6	11052	hgsc.bcm.edu;ucsc.edu	37	12	69644959	69644959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	69644959	A	G	69644959	3	3	55	1	0	0	0	0	1	0	0	0	3831	439	16	3	117	3	CPSF6	12	69644959	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	18572456	69644959	64206936	38	3891											
PPP1R12A	4659	hgsc.bcm.edu;ucsc.edu	37	12	80214666	80214666	+	Silent	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	80214666	A	G	80214666	2	3	55	1	0	0	0	0	0	0	0	1	12364	126	5	3		3	PPP1R12A	12	80214666	Silent	SNP	A	TCGA-AK-3425-01A-02D-1361-10	10569707	80214666	53637229	39	3892											
OAS1	4938	hgsc.bcm.edu;ucsc.edu	37	12	113357353	113357353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	113357353	C	T	113357353	3	4	55	1	0	0	0	0	1	0	0	0	10806	681	24	2	1277	2	OAS1	12	113357353	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	33142687	113357353	20494542	40	3893											
FBXW8	26259	hgsc.bcm.edu	37	12	117448164	117448164	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	117448164	T	A	117448164	3	1	55	1	0	0	0	0	1	0	0	0	5777	1606	56	5	1306	5	FBXW8	12	117448164	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	4090811	117448164	16403731	41	3894											
RFC5	5985	hgsc.bcm.edu;ucsc.edu	37	12	118462688	118462688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	118462688	T	A	118462688	3	1	55	1	0	0	0	0	1	0	0	0	13261	1580	55	5	482	5	RFC5	12	118462688	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	1014524	118462688	15389207	42	3895											
PCDH17	27253	hgsc.bcm.edu;ucsc.edu	37	13	58299308	58299308	+	Silent	SNP	G	G	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	58299308	G	A	58299308	2	1	55	1	0	0	0	0	0	0	0	1	11519	962	34	2		2	PCDH17	13	58299308	Silent	SNP	G	TCGA-AK-3425-01A-02D-1361-10		58299308	56870570	43	3896											
DIAPH3	81624	hgsc.bcm.edu	37	13	60616944	60616944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	60616944	T	G	60616944	3	3	55	1	0	0	0	0	1	0	0	0	4522	1609	56	5	3191	5	DIAPH3	13	60616944	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	2317636	60616944	54552934	44	3897											
PELI2	57161	hgsc.bcm.edu	37	14	56746421	56746421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	56746421	A	G	56746421	3	3	55	1	0	0	0	0	1	0	0	0	11729	449	16	3	245	3	PELI2	14	56746421	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10		56746421	50603119	45	3898											
AHNAK2	113146	hgsc.bcm.edu	37	14	105406727	105406727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	105406727	A	G	105406727	3	3	55	1	0	0	0	0	1	0	0	0	415	72	3	3	2330	3	AHNAK2	14	105406727	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	48660306	105406727	1942813	46	3899											
MAGEL2	54551	hgsc.bcm.edu;ucsc.edu	37	15	23890714	23890714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	23890714	T	C	23890714	3	2	55	1	0	0	0	0	1	0	0	0	9196	1406	49	3	1577	3	MAGEL2	15	23890714	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10		23890714	78640678	47	3900											
APBA2	321	hgsc.bcm.edu;ucsc.edu	37	15	29385399	29385399	+	Silent	SNP	G	G	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	29385399	G	T	29385399	2	4	55	1	0	0	0	0	0	0	0	1	757	1074	38	4		4	APBA2	15	29385399	Silent	SNP	G	TCGA-AK-3425-01A-02D-1361-10	5494685	29385399	73145993	48	3901											
TP53BP1	7158	hgsc.bcm.edu	37	15	43738686	43738686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	43738686	G	A	43738686	3	1	55	1	0	0	0	0	1	0	0	0	16395	942	33	2	3054	2	TP53BP1	15	43738686	Missense_Mutation	SNP	G	TCGA-AK-3425-01A-02D-1361-10	14353287	43738686	58792706	49	3902											
AP3B2	8120	hgsc.bcm.edu	37	15	83332659	83332660	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	83332660	-	A	83332659	7	5	55	1	0	1	1	0	0	0	0	0	745	1294	45	0	1007	0	AP3B2	15	83332659	Frame_Shift_Ins	INS	-	TCGA-AK-3425-01A-02D-1361-10	39593973	83332659	19198733	50	3903											
LRRK1	79705	hgsc.bcm.edu	37	15	101595297	101595297	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	101595297	G	T	101595297	4	4	55	1	0	0	0	0	0	1	0	0	9039	1175	41	4	4303	4	LRRK1	15	101595297	Nonsense_Mutation	SNP	G	TCGA-AK-3425-01A-02D-1361-10	18262638	101595297	936095	51	3904											
ATP2A1	487	hgsc.bcm.edu	37	16	28909647	28909647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	28909647	G	T	28909647	3	4	55	1	0	0	0	0	1	0	0	0	1136	1203	42	4	1693	4	ATP2A1	16	28909647	Missense_Mutation	SNP	G	TCGA-AK-3425-01A-02D-1361-10		28909647	61445106	52	3905											
ITGAL	3683	hgsc.bcm.edu	37	16	30495168	30495168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	30495168	A	G	30495168	3	3	55	1	0	0	0	0	1	0	0	0	7893	304	11	3	773	3	ITGAL	16	30495168	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	1585521	30495168	59859585	53	3906											
CNOT1	23019	hgsc.bcm.edu	37	16	58577565	58577565	+	Silent	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	58577565	A	G	58577565	2	3	55	1	0	0	0	0	0	0	0	1	3619	59	3	3		3	CNOT1	16	58577565	Silent	SNP	A	TCGA-AK-3425-01A-02D-1361-10	28082397	58577565	31777188	54	3907											
TMEM102	284114	hgsc.bcm.edu	37	17	7339626	7339626	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	7339626	G	C	7339626	3	2	55	1	0	0	0	0	1	0	0	0	16029	1087	38	4	334	4	TMEM102	17	7339626	Missense_Mutation	SNP	G	TCGA-AK-3425-01A-02D-1361-10		7339626	73855584	55	3908											
USP43	124739	hgsc.bcm.edu	37	17	9631914	9631916	+	In_Frame_Del	DEL	GGG	GGG	-	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	GGG	GGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	-	9631916	GGG	-	9631914	7	5	55	1	0	1	0	1	0	0	0	0	17086	991	35	0	3037	0	USP43	17	9631914	In_Frame_Del	DEL	GGG	TCGA-AK-3425-01A-02D-1361-10	2292288	9631914	71563296	56	3909											
PHF12	57649	hgsc.bcm.edu	37	17	27233226	27233226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	27233226	A	G	27233226	3	3	55	1	0	0	0	0	1	0	0	0	11830	159	6	3	28	3	PHF12	17	27233226	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	17601312	27233226	53961984	57	3910											
AP2B1	163	hgsc.bcm.edu;ucsc.edu	37	17	33921080	33921080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	33921080	A	C	33921080	3	2	55	1	0	0	0	0	1	0	0	0	741	363	13	5	33	5	AP2B1	17	33921080	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	6687854	33921080	47274130	58	3911											
HELZ	9931	hgsc.bcm.edu;ucsc.edu	37	17	65110477	65110477	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	65110477	A	C	65110477	3	2	55	1	0	0	0	0	1	0	0	0	7056	101	4	5	1971	5	HELZ	17	65110477	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	31189397	65110477	16084733	59	3912											
SPIRE1	56907	hgsc.bcm.edu	37	18	12454459	12454459	+	Silent	SNP	T	T	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	12454459	T	C	12454459	2	2	55	1	0	0	0	0	0	0	0	1	15083	1490	52	3		3	SPIRE1	18	12454459	Silent	SNP	T	TCGA-AK-3425-01A-02D-1361-10		12454459	65622789	60	3913											
FECH	2235	hgsc.bcm.edu;ucsc.edu	37	18	55238682	55238682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	55238682	C	A	55238682	3	1	55	1	0	0	0	0	1	0	0	0	5815	856	30	4	898	4	FECH	18	55238682	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	42784223	55238682	22838566	61	3914											
ALPK2	115701	hgsc.bcm.edu;ucsc.edu	37	18	56171280	56171280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	56171280	C	A	56171280	3	1	55	1	0	0	0	0	1	0	0	0	545	855	30	4	394	4	ALPK2	18	56171280	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	932598	56171280	21905968	62	3915											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9057886	9057886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	9057886	C	G	9057886	3	3	55	1	0	0	0	0	1	0	0	0	9980	478	17	4	14291	4	MUC16	19	9057886	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10		9057886	50071097	63	3916											
KANK2	25959	hgsc.bcm.edu;ucsc.edu	37	19	11277265	11277265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	C	11277265	T	C	11277265	3	2	55	1	0	0	0	0	1	0	0	0	7984	1551	54	3	34	3	KANK2	19	11277265	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	2219379	11277265	47851718	64	3917											
CYP4F12	66002	hgsc.bcm.edu;ucsc.edu	37	19	15794425	15794425	+	Missense_Mutation	SNP	A	A	G	rs116788636	byfrequency;by1000genomes	TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	15794425	A	G	15794425	3	3	55	1	0	0	0	0	1	0	0	0	4189	159	6	3	792	3	CYP4F12	19	15794425	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10	4517160	15794425	43334558	65	3918											
ZNF682	91120	hgsc.bcm.edu;ucsc.edu	37	19	20117844	20117844	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	20117844	T	A	20117844	3	1	55	1	0	0	0	0	1	0	0	0	18101	1841	64	5	1033	5	ZNF682	19	20117844	Missense_Mutation	SNP	T	TCGA-AK-3425-01A-02D-1361-10	4323419	20117844	39011139	66	3919											
FBXO27	126433	hgsc.bcm.edu;ucsc.edu	37	19	39517640	39517640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	39517640	C	T	39517640	3	4	55	1	0	0	0	0	1	0	0	0	5744	855	30	2	281	2	FBXO27	19	39517640	Missense_Mutation	SNP	C	TCGA-AK-3425-01A-02D-1361-10	19399796	39517640	19611343	67	3920											
ZNF845	91664	hgsc.bcm.edu	37	19	53856496	53856496	+	Silent	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	53856496	A	G	53856496	2	3	55	1	0	0	0	0	0	0	0	1	18203	11	1	3		3	ZNF845	19	53856496	Silent	SNP	A	TCGA-AK-3425-01A-02D-1361-10	14338856	53856496	5272487	68	3921											
ZNF337	26152	hgsc.bcm.edu	37	20	25655968	25655968	+	Silent	SNP	C	C	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	25655968	C	T	25655968	2	4	55	1	0	0	0	0	0	0	0	1	17865	610	22	2		2	ZNF337	20	25655968	Silent	SNP	C	TCGA-AK-3425-01A-02D-1361-10		25655968	37369552	69	3922											
TRPM2	7226	hgsc.bcm.edu	37	21	45798894	45798894	+	Silent	SNP	C	C	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	45798894	C	A	45798894	2	1	55	1	0	0	0	0	0	0	0	1	16598	581	21	4		4	TRPM2	21	45798894	Silent	SNP	C	TCGA-AK-3425-01A-02D-1361-10		45798894	2331001	70	3923											
MICAL3	57553	hgsc.bcm.edu	37	22	18389489	18389489	+	Silent	SNP	C	C	T	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	T	18389489	C	T	18389489	2	4	55	1	0	0	0	0	0	0	0	1	9578	680	24	2		2	MICAL3	22	18389489	Silent	SNP	C	TCGA-AK-3425-01A-02D-1361-10		18389489	32915077	71	3924											
SLC7A4	6545	hgsc.bcm.edu	37	22	21385634	21385634	+	Silent	SNP	G	G	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	21385634	G	A	21385634	2	1	55	1	0	0	0	0	0	0	0	1	14712	1136	40	1		1	SLC7A4	22	21385634	Silent	SNP	G	TCGA-AK-3425-01A-02D-1361-10	2996145	21385634	29918932	72	3925											
SMARCB1	6598	hgsc.bcm.edu	37	22	24159114	24159114	+	Silent	SNP	C	C	A	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	A	24159114	C	A	24159114	2	1	55	1	0	0	0	0	0	0	0	1	14787	813	29	4		4	SMARCB1	22	24159114	Silent	SNP	C	TCGA-AK-3425-01A-02D-1361-10	2773480	24159114	27145452	73	3926											
CCDC120	90060	hgsc.bcm.edu	37	X	48919829	48919829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	48919829	A	G	48919829	3	3	55	1	0	0	0	0	1	0	0	0	2758	333	12	3	24	3	CCDC120	23	48919829	Missense_Mutation	SNP	A	TCGA-AK-3425-01A-02D-1361-10		48919829	106350731	74	3927											
ACSL4	2182	hgsc.bcm.edu;ucsc.edu	37	X	108912271	108912271	+	Silent	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	108912271	A	G	108912271	2	3	55	1	0	0	0	0	0	0	0	1	179	1	1	3		3	ACSL4	23	108912271	Silent	SNP	A	TCGA-AK-3425-01A-02D-1361-10	59992442	108912271	46358289	75	3928											
CXorf66	347487	hgsc.bcm.edu	37	X	139038424	139038424	+	Silent	SNP	A	A	G	novel		TCGA-AK-3425-01A-02D-1361-10	TCGA-AK-3425-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a806567e-5877-4a25-964b-34fd55c2dc53	0d33d80e-21da-45e8-b3bc-1b9084b8043a	G	139038424	A	G	139038424	2	3	55	1	0	0	0	0	0	0	0	1	4120	291	11	3		3	CXorf66	23	139038424	Silent	SNP	A	TCGA-AK-3425-01A-02D-1361-10	30126153	139038424	16232136	76	3929											
BRDT	676	broad.mit.edu	37	1	92430268	92430268	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	T	92430268	G	T	92430268	4	4	56	1	0	0	0	0	0	1	0	0	1510	943	33	4	283	4	BRDT	1	92430268	Nonsense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08		92430268	156820353	1	3930											
IL1RL2	8808	broad.mit.edu	37	2	102849529	102849529	+	Missense_Mutation	SNP	G	G	C			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	C	102849529	G	C	102849529	3	2	56	1	0	0	0	0	1	0	0	0	7671	933	33	4	1276	4	IL1RL2	2	102849529	Missense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08		102849529	140349844	2	3931											
CKAP2L	150468	broad.mit.edu	37	2	113514753	113514755	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	-	113514755	AAC	-	113514753	7	5	56	1	0	1	0	1	0	0	0	0	3445	1	1	0	2066	0	CKAP2L	2	113514753	In_Frame_Del	DEL	AAC	TCGA-AK-3427-01A-01D-0966-08	10665224	113514753	129684620	3	3932											
SPHKAP	80309	broad.mit.edu	37	2	228883378	228883378	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	T	228883378	C	T	228883378	3	4	56	1	0	0	0	0	1	0	0	0	15060	507	18	2	2934	2	SPHKAP	2	228883378	Missense_Mutation	SNP	C	TCGA-AK-3427-01A-01D-0966-08	115368625	228883378	14315995	4	3933											
CAPN10	11132	broad.mit.edu	37	2	241534490	241534490	+	Silent	SNP	C	C	A			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	A	241534490	C	A	241534490	2	1	56	1	0	0	0	0	0	0	0	1	2625	726	26	4		4	CAPN10	2	241534490	Silent	SNP	C	TCGA-AK-3427-01A-01D-0966-08	12651112	241534490	1664883	5	3934											
TRNT1	51095	broad.mit.edu	37	3	3170805	3170805	+	Silent	SNP	A	A	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	T	3170805	A	T	3170805	2	4	56	1	0	0	0	0	0	0	0	1	16585	436	16	5		5	TRNT1	3	3170805	Silent	SNP	A	TCGA-AK-3427-01A-01D-0966-08		3170805	194851625	6	3935											
SFRP2	6423	broad.mit.edu	37	4	154702608	154702608	+	Missense_Mutation	SNP	A	A	C			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	C	154702608	A	C	154702608	3	2	56	1	0	0	0	0	1	0	0	0	14175	159	6	5	8	5	SFRP2	4	154702608	Missense_Mutation	SNP	A	TCGA-AK-3427-01A-01D-0966-08		154702608	36451668	7	3936											
NDUFAF2	91942	broad.mit.edu	37	5	60241050	60241050	+	Translation_Start_Site	SNP	G	G	A			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	268e24ba-3b04-4f38-b63e-927ff8bc62d3	A	60241050	G	A	60241050	1	1	56	1	0	0	0	0	0	0	0	0	10282	1102	38	1		1	NDUFAF2	5	60241050	Translation_Start_Site	SNP	G	TCGA-AK-3427-01A-01D-0966-08		60241050	120674210	8	3937											
PCDHB16	57717	broad.mit.edu	37	5	140563385	140563386	+	Frame_Shift_Ins	INS	-	-	A	rs115003049	byFrequency	TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	A	140563386	-	A	140563385	7	5	56	1	0	1	1	0	0	0	0	0	11548	1413	49	0	1253	0	PCDHB16	5	140563385	Frame_Shift_Ins	INS	-	TCGA-AK-3427-01A-01D-0966-08	80322335	140563385	40351875	9	3938											
ZNF12	7559	broad.mit.edu	37	7	6731556	6731556	+	Missense_Mutation	SNP	G	G	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	T	6731556	G	T	6731556	3	4	56	1	0	0	0	0	1	0	0	0	17730	1252	44	4	1080	4	ZNF12	7	6731556	Missense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08		6731556	152407107	10	3939											
AUTS2	26053	broad.mit.edu	37	7	70255667	70255667	+	Missense_Mutation	SNP	G	G	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	T	70255667	G	T	70255667	3	4	56	1	0	0	0	0	1	0	0	0	1225	1310	46	4	3684	4	AUTS2	7	70255667	Missense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08	63524111	70255667	88882996	11	3940											
MUC17	140453	broad.mit.edu	37	7	100686235	100686235	+	Missense_Mutation	SNP	G	G	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	T	100686235	G	T	100686235	3	4	56	1	0	0	0	0	1	0	0	0	9981	1310	46	4	11548	4	MUC17	7	100686235	Missense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08	30430568	100686235	58452428	12	3941											
LAMB1	3912	broad.mit.edu	37	7	107592482	107592482	+	Missense_Mutation	SNP	G	G	C			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	C	107592482	G	C	107592482	3	2	56	1	0	0	0	0	1	0	0	0	8617	971	34	4	2142	4	LAMB1	7	107592482	Missense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08	6906247	107592482	51546181	13	3942											
PFKP	5214	broad.mit.edu	37	10	3172134	3172134	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	A	3172134	G	A	3172134	3	1	56	1	0	0	0	0	1	0	0	0	11773	1087	38	1	1873	1	PFKP	10	3172134	Missense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08		3172134	132362613	14	3943											
FAM35A	54537	broad.mit.edu	37	10	88946959	88946959	+	Splice_Site	SNP	T	T	G			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	G	88946959	T	G	88946959	5	3	56	1	0	0	0	0	0	0	1	0	5560	1652	57	5	2332	5	FAM35A	10	88946959	Splice_Site	SNP	T	TCGA-AK-3427-01A-01D-0966-08	85774825	88946959	46587788	15	3944											
PTEN	5728	broad.mit.edu	37	10	89720860	89720860	+	Missense_Mutation	SNP	T	T	A			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	A	89720860	T	A	89720860	3	1	56	1	0	0	0	0	1	0	0	0	12748	1838	64	5	1041	5	PTEN	10	89720860	Missense_Mutation	SNP	T	TCGA-AK-3427-01A-01D-0966-08	773901	89720860	45813887	16	3945											
TDRD1	56165	broad.mit.edu	37	10	115973808	115973808	+	Missense_Mutation	SNP	T	T	C			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	C	115973808	T	C	115973808	3	2	56	1	0	0	0	0	1	0	0	0	15742	1638	57	3	2205	3	TDRD1	10	115973808	Missense_Mutation	SNP	T	TCGA-AK-3427-01A-01D-0966-08	26252948	115973808	19560939	17	3946											
CHST1	8534	broad.mit.edu	37	11	45671742	45671742	+	Missense_Mutation	SNP	G	G	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	T	45671742	G	T	45671742	3	4	56	1	0	0	0	0	1	0	0	0	3399	1078	38	4	507	4	CHST1	11	45671742	Missense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08		45671742	89334774	18	3947											
SLC22A6	9356	broad.mit.edu	37	11	62744726	62744726	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	T	62744726	C	T	62744726	3	4	56	1	0	0	0	0	1	0	0	0	14471	782	27	1	204	1	SLC22A6	11	62744726	Missense_Mutation	SNP	C	TCGA-AK-3427-01A-01D-0966-08	17072984	62744726	72261790	19	3948											
EMG1	10436	broad.mit.edu	37	12	7080212	7080213	+	RNA	INS	-	-	C	rs36063533		TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	268e24ba-3b04-4f38-b63e-927ff8bc62d3	C	7080213	-	C	7080212	6	5	56	0	1	1	1	0	0	0	0	0	5092	1722	60	0		0	EMG1	12	7080212	RNA	INS	-	TCGA-AK-3427-01A-01D-0966-08		7080212	126771683	20	3949											
FGD6	55785	broad.mit.edu	37	12	95535270	95535270	+	Missense_Mutation	SNP	G	G	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	T	95535270	G	T	95535270	3	4	56	1	0	0	0	0	1	0	0	0	5844	1261	44	4	1625	4	FGD6	12	95535270	Missense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08	88455058	95535270	38316625	21	3950											
SYNJ2BP	55333	broad.mit.edu	37	14	70855304	70855304	+	Silent	SNP	G	G	A			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	A	70855304	G	A	70855304	2	1	56	1	0	0	0	0	0	0	0	1	15466	1045	37	1		1	SYNJ2BP	14	70855304	Silent	SNP	G	TCGA-AK-3427-01A-01D-0966-08		70855304	36494236	22	3951											
FLRT2	23768	broad.mit.edu	37	14	86088696	86088696	+	Silent	SNP	C	C	A	rs148371022		TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	9e4da18c-4db7-424b-bdda-f4135cc43dfd	A	86088696	C	A	86088696	2	1	56	1	0	0	0	0	0	0	0	1	5946	527	19	4		4	FLRT2	14	86088696	Silent	SNP	C	TCGA-AK-3427-01A-01D-0966-08	15233392	86088696	21260844	23	3952											
TRPV2	51393	broad.mit.edu	37	17	16335490	16335492	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	268e24ba-3b04-4f38-b63e-927ff8bc62d3	-	16335492	TGC	-	16335490	7	5	56	1	0	1	0	1	0	0	0	0	16608	1696	59	0	1907	0	TRPV2	17	16335490	In_Frame_Del	DEL	TGC	TCGA-AK-3427-01A-01D-0966-08		16335490	64859720	24	3953											
OLFM2	93145	broad.mit.edu	37	19	9965171	9965171	+	Silent	SNP	C	C	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	268e24ba-3b04-4f38-b63e-927ff8bc62d3	T	9965171	C	T	9965171	2	4	56	1	0	0	0	0	0	0	0	1	10860	755	27	1		1	OLFM2	19	9965171	Silent	SNP	C	TCGA-AK-3427-01A-01D-0966-08		9965171	49163812	25	3954											
HSPA12B	116835	broad.mit.edu	37	20	3726646	3726646	+	Missense_Mutation	SNP	G	G	T			TCGA-AK-3427-01A-01D-0966-08	TCGA-AK-3427-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e82dec65-35c3-47c4-b569-f7c39720a474	268e24ba-3b04-4f38-b63e-927ff8bc62d3	T	3726646	G	T	3726646	3	4	56	1	0	0	0	0	1	0	0	0	7412	971	34	4	665	4	HSPA12B	20	3726646	Missense_Mutation	SNP	G	TCGA-AK-3427-01A-01D-0966-08		3726646	59298874	26	3955											
KIAA1751	85452	hgsc.bcm.edu	37	1	1897857	1897857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	1897857	C	A	1897857	4	1	57	1	0	0	0	0	0	1	0	0	8263	835	29	4	962	4	KIAA1751	1	1897857	Nonsense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10		1897857	247352764	1	3956											
PADI2	11240	hgsc.bcm.edu;ucsc.edu	37	1	17396596	17396596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	17396596	A	C	17396596	3	2	57	1	0	0	0	0	1	0	0	0	11385	246	9	5	254	5	PADI2	1	17396596	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	15498739	17396596	231854025	2	3957											
MECR	51102	hgsc.bcm.edu	37	1	29528533	29528533	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	29528533	G	C	29528533	3	2	57	1	0	0	0	0	1	0	0	0	9431	1368	48	4	463	4	MECR	1	29528533	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10	12131937	29528533	219722088	3	3958											
ZMYM1	79830	hgsc.bcm.edu	37	1	35570190	35570190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	35570190	A	C	35570190	3	2	57	1	0	0	0	0	1	0	0	0	17711	40	2	5	645	5	ZMYM1	1	35570190	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	6041657	35570190	213680431	4	3959											
EIF2C1	26523	hgsc.bcm.edu	37	1	36372708	36372708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	36372708	A	C	36372708	3	2	57	1	0	0	0	0	1	0	0	0	5007	275	10	5	1616	5	EIF2C1	1	36372708	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	802518	36372708	212877913	5	3960											
GIPC2	54810	hgsc.bcm.edu	37	1	78601425	78601425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	78601425	T	C	78601425	3	2	57	1	0	0	0	0	1	0	0	0	6400	1477	51	3	968	3	GIPC2	1	78601425	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10	42228717	78601425	170649196	6	3961											
GBP5	115362	hgsc.bcm.edu;ucsc.edu	37	1	89732723	89732723	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	89732723	C	G	89732723	3	3	57	1	0	0	0	0	1	0	0	0	6284	913	32	4	1246	4	GBP5	1	89732723	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	11131298	89732723	159517898	7	3962											
CCDC18	343099	hgsc.bcm.edu;ucsc.edu	37	1	93672797	93672798	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	93672798	-	A	93672797	7	5	57	1	0	1	1	0	0	0	0	0	2796	942	33	0	1439	0	CCDC18	1	93672797	Frame_Shift_Ins	INS	-	TCGA-AK-3428-01A-02D-1361-10	3940074	93672797	155577824	8	3963											
SARS	6301	hgsc.bcm.edu;ucsc.edu	37	1	109773533	109773533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	109773533	G	T	109773533	3	4	57	1	0	0	0	0	1	0	0	0	13857	1290	45	4	499	4	SARS	1	109773533	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10	16100736	109773533	139477088	9	3964											
PDE4DIP	9659	hgsc.bcm.edu	37	1	144906486	144906486	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	144906486	G	A	144906486	4	1	57	1	0	0	0	0	0	1	0	0	11650	1328	46	2	4787	2	PDE4DIP	1	144906486	Nonsense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10	35132953	144906486	104344135	10	3965											
TDRKH	11022	hgsc.bcm.edu;ucsc.edu	37	1	151751697	151751697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	151751697	C	T	151751697	3	4	57	1	0	0	0	0	1	0	0	0	15749	536	19	1	1278	1	TDRKH	1	151751697	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	6845211	151751697	97498924	11	3966											
POGK	57645	hgsc.bcm.edu	37	1	166818812	166818812	+	Silent	SNP	G	G	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	166818812	G	T	166818812	2	4	57	1	0	0	0	0	0	0	0	1	12192	1103	39	4		4	POGK	1	166818812	Silent	SNP	G	TCGA-AK-3428-01A-02D-1361-10	15067115	166818812	82431809	12	3967											
TAF1A	9015	hgsc.bcm.edu;ucsc.edu	37	1	222736578	222736578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	222736578	C	T	222736578	3	4	57	1	0	0	0	0	1	0	0	0	15531	855	30	2	342	2	TAF1A	1	222736578	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	55917766	222736578	26514043	13	3968											
OR2T27	403239	hgsc.bcm.edu	37	1	248814052	248814052	+	Missense_Mutation	SNP	T	T	A	rs61834486	bycluster	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	248814052	T	A	248814052	3	1	57	1	0	0	0	0	1	0	0	0	11028	1609	56	5	822	5	OR2T27	1	248814052	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10	26077474	248814052	436569	14	3969											
SMC6	79677	hgsc.bcm.edu	37	2	17922877	17922877	+	Splice_Site	SNP	A	A	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	17922877	A	G	17922877	5	3	57	1	0	0	0	0	0	0	1	0	14800	405	14	3	3135	3	SMC6	2	17922877	Splice_Site	SNP	A	TCGA-AK-3428-01A-02D-1361-10		17922877	225276496	15	3970											
HADHB	3032	hgsc.bcm.edu;ucsc.edu	37	2	26505782	26505782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	26505782	G	A	26505782	3	1	57	1	0	0	0	0	1	0	0	0	6951	1203	42	2	1041	2	HADHB	2	26505782	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10	8582905	26505782	216693591	16	3971											
NCAPH	23397	hgsc.bcm.edu;ucsc.edu	37	2	97020027	97020027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	97020027	G	A	97020027	3	1	57	1	0	0	0	0	1	0	0	0	10216	1232	43	2	1143	2	NCAPH	2	97020027	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10	70514245	97020027	146179346	17	3972											
UXS1	80146	hgsc.bcm.edu;ucsc.edu	37	2	106729163	106729163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	106729163	A	G	106729163	3	3	57	1	0	0	0	0	1	0	0	0	17121	217	8	3	483	3	UXS1	2	106729163	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	9709136	106729163	136470210	18	3973											
TTN	7273	hgsc.bcm.edu	37	2	179429258	179429258	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	179429258	T	G	179429258	3	3	57	1	0	0	0	0	1	0	0	0	16747	1821	63	5	26526	5	TTN	2	179429258	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10	72700095	179429258	63770115	19	3974											
ZNF385B	151126	hgsc.bcm.edu;ucsc.edu	37	2	180310276	180310276	+	Splice_Site	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	180310276	C	T	180310276	5	4	57	1	0	0	0	0	0	0	1	0	17889	521	18	2	331	2	ZNF385B	2	180310276	Splice_Site	SNP	C	TCGA-AK-3428-01A-02D-1361-10	881018	180310276	62889097	20	3975											
C2orf80	389073	hgsc.bcm.edu	37	2	209051692	209051692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	209051692	T	C	209051692	3	2	57	1	0	0	0	0	1	0	0	0	2199	1850	64	3	594	3	C2orf80	2	209051692	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10	28741416	209051692	34147681	21	3976											
STK11IP	114790	hgsc.bcm.edu	37	2	220466798	220466798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	220466798	C	A	220466798	3	1	57	1	0	0	0	0	1	0	0	0	15300	710	25	4	482	4	STK11IP	2	220466798	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	11415106	220466798	22732575	22	3977											
ITIH1	3697	hgsc.bcm.edu;ucsc.edu	37	3	52825566	52825566	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	52825566	C	G	52825566	3	3	57	1	0	0	0	0	1	0	0	0	7910	913	32	4	2610	4	ITIH1	3	52825566	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10		52825566	145196864	23	3978											
DNAH12	201625	hgsc.bcm.edu	37	3	57488136	57488136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	57488136	T	G	57488136	3	3	57	1	0	0	0	0	1	0	0	0	4602	1783	62	5	8364	5	DNAH12	3	57488136	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10	4662570	57488136	140534294	24	3979											
MAN2B2	23324	hgsc.bcm.edu	37	4	6588812	6588812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	6588812	A	G	6588812	3	3	57	1	0	0	0	0	1	0	0	0	9224	159	6	3	495	3	MAN2B2	4	6588812	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10		6588812	184565464	25	3980											
GSTCD	79807	hgsc.bcm.edu	37	4	106766678	106766678	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	106766678	A	C	106766678	3	2	57	1	0	0	0	0	1	0	0	0	6842	217	8	5	1888	5	GSTCD	4	106766678	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	100177866	106766678	84387598	26	3981											
FAT4	79633	hgsc.bcm.edu	37	4	126336940	126336940	+	Silent	SNP	A	A	C	rs192467233	by1000genomes;alternate_allele	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	126336940	A	C	126336940	2	2	57	1	0	0	0	0	0	0	0	1	5699	146	6	5		5	FAT4	4	126336940	Silent	SNP	A	TCGA-AK-3428-01A-02D-1361-10	19570262	126336940	64817336	27	3982											
DEPDC1B	55789	hgsc.bcm.edu	37	5	59982922	59982922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	59982922	G	C	59982922	3	2	57	1	0	0	0	0	1	0	0	0	4442	1299	45	4	1448	4	DEPDC1B	5	59982922	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10		59982922	120932338	28	3983											
PCDHB7	56129	hgsc.bcm.edu	37	5	140553822	140553822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	140553822	C	A	140553822	3	1	57	1	0	0	0	0	1	0	0	0	11554	623	22	4	1408	4	PCDHB7	5	140553822	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	80570900	140553822	40361438	29	3984											
TNIP1	10318	hgsc.bcm.edu;ucsc.edu	37	5	150422134	150422134	+	Silent	SNP	G	G	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	150422134	G	C	150422134	2	2	57	1	0	0	0	0	0	0	0	1	16326	1161	41	4		4	TNIP1	5	150422134	Silent	SNP	G	TCGA-AK-3428-01A-02D-1361-10	9868312	150422134	30493126	30	3985											
SERPINB1	1992	hgsc.bcm.edu	37	6	2834179	2834179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	2834179	T	C	2834179	3	2	57	1	0	0	0	0	1	0	0	0	14109	1783	62	3	340	3	SERPINB1	6	2834179	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10		2834179	168280888	31	3986											
DNAH8	1769	hgsc.bcm.edu;ucsc.edu	37	6	38994431	38994431	+	Silent	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	38994431	G	A	38994431	2	1	57	1	0	0	0	0	0	0	0	1	4609	1132	40	1		1	DNAH8	6	38994431	Silent	SNP	G	TCGA-AK-3428-01A-02D-1361-10	36160252	38994431	132120636	32	3987											
CUL9	23113	hgsc.bcm.edu	37	6	43174214	43174214	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	43174214	T	G	43174214	3	3	57	1	0	0	0	0	1	0	0	0	4063	1461	51	5	5276	5	CUL9	6	43174214	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10	4179783	43174214	127940853	33	3988											
RHAG	6005	hgsc.bcm.edu	37	6	49587014	49587014	+	Silent	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	49587014	C	T	49587014	2	4	57	1	0	0	0	0	0	0	0	1	13328	912	32	2		2	RHAG	6	49587014	Silent	SNP	C	TCGA-AK-3428-01A-02D-1361-10	6412800	49587014	121528053	34	3989											
CRHR2	1395	hgsc.bcm.edu;ucsc.edu	37	7	30706864	30706864	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	30706864	C	A	30706864	4	1	57	1	0	0	0	0	0	1	0	0	3874	835	29	4	980	4	CRHR2	7	30706864	Nonsense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10		30706864	128431799	35	3990											
POP7	10248	hgsc.bcm.edu	37	7	100304816	100304816	+	Silent	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	100304816	G	A	100304816	2	1	57	1	0	0	0	0	0	0	0	1	12261	1277	45	2		2	POP7	7	100304816	Silent	SNP	G	TCGA-AK-3428-01A-02D-1361-10	69597952	100304816	58833847	36	3991											
GPR37	2861	hgsc.bcm.edu;ucsc.edu	37	7	124404891	124404891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	124404891	G	A	124404891	3	1	57	1	0	0	0	0	1	0	0	0	6698	1377	48	2	1709	2	GPR37	7	124404891	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10	24100075	124404891	34733772	37	3992											
KIAA1549	57670	hgsc.bcm.edu;ucsc.edu	37	7	138595936	138595936	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	138595936	T	G	138595936	3	3	57	1	0	0	0	0	1	0	0	0	8251	1841	64	5	2819	5	KIAA1549	7	138595936	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10	14191045	138595936	20542727	38	3993											
NRG1	3084	hgsc.bcm.edu;ucsc.edu	37	8	32600253	32600253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	32600253	T	A	32600253	3	1	57	1	0	0	0	0	1	0	0	0	10654	1652	57	5	2261	5	NRG1	8	32600253	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10		32600253	113763769	39	3994											
ADAM9	8754	hgsc.bcm.edu;ucsc.edu	37	8	38869228	38869228	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	38869228	A	T	38869228	3	4	57	1	0	0	0	0	1	0	0	0	253	63	3	5	257	5	ADAM9	8	38869228	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	6268975	38869228	107494794	40	3995											
TGS1	96764	hgsc.bcm.edu	37	8	56711602	56711602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	56711602	A	C	56711602	3	2	57	1	0	0	0	0	1	0	0	0	15849	15	1	5	1702	5	TGS1	8	56711602	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	17842374	56711602	89652420	41	3996											
ZFPM2	23414	hgsc.bcm.edu;ucsc.edu	37	8	106815608	106815608	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	106815608	C	G	106815608	3	3	57	1	0	0	0	0	1	0	0	0	17670	479	17	4	3328	4	ZFPM2	8	106815608	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	50104006	106815608	39548414	42	3997											
ZHX1	11244	hgsc.bcm.edu	37	8	124267674	124267674	+	Silent	SNP	A	A	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	124267674	A	G	124267674	2	3	57	1	0	0	0	0	0	0	0	1	17687	1	1	3		3	ZHX1	8	124267674	Silent	SNP	A	TCGA-AK-3428-01A-02D-1361-10	17452066	124267674	22096348	43	3998											
SVEP1	79987	hgsc.bcm.edu	37	9	113169538	113169538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	113169538	A	G	113169538	3	3	57	1	0	0	0	0	1	0	0	0	15432	275	10	3	2417	3	SVEP1	9	113169538	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10		113169538	28043893	44	3999											
PDCD11	22984	hgsc.bcm.edu;ucsc.edu	37	10	105164925	105164925	+	Silent	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	105164925	C	T	105164925	2	4	57	1	0	0	0	0	0	0	0	1	11624	610	22	2		2	PDCD11	10	105164925	Silent	SNP	C	TCGA-AK-3428-01A-02D-1361-10		105164925	30369822	45	4000											
DHX32	55760	hgsc.bcm.edu;ucsc.edu	37	10	127548370	127548370	+	Silent	SNP	G	G	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	127548370	G	C	127548370	2	2	57	1	0	0	0	0	0	0	0	1	4507	987	35	4		4	DHX32	10	127548370	Silent	SNP	G	TCGA-AK-3428-01A-02D-1361-10	22383445	127548370	7986377	46	4001											
SOX6	55553	hgsc.bcm.edu	37	11	16010675	16010675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	16010675	G	A	16010675	3	1	57	1	0	0	0	0	1	0	0	0	14968	1116	39	1	664	1	SOX6	11	16010675	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10		16010675	118995841	47	4002											
HINFP	25988	hgsc.bcm.edu	37	11	119005189	119005189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	119005189	C	T	119005189	3	4	57	1	0	0	0	0	1	0	0	0	7117	594	21	2	1569	2	HINFP	11	119005189	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	102994514	119005189	16001327	48	4003											
LRMP	4033	hgsc.bcm.edu;ucsc.edu	37	12	25232386	25232386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	25232386	A	G	25232386	3	3	57	1	0	0	0	0	1	0	0	0	8957	352	13	3	136	3	LRMP	12	25232386	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10		25232386	108619509	49	4004											
KLHDC5	57542	hgsc.bcm.edu	37	12	27950786	27950786	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	27950786	A	T	27950786	3	4	57	1	0	0	0	0	1	0	0	0	8366	304	11	5	1215	5	KLHDC5	12	27950786	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	2718400	27950786	105901109	50	4005											
UNG	7374	hgsc.bcm.edu;ucsc.edu	37	12	109541417	109541417	+	Splice_Site	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	109541417	G	A	109541417	5	1	57	1	0	0	0	0	0	0	1	0	17011	1275	44	2	929	2	UNG	12	109541417	Splice_Site	SNP	G	TCGA-AK-3428-01A-02D-1361-10	81590631	109541417	24310478	51	4006											
ACAD10	80724	hgsc.bcm.edu	37	12	112186271	112186271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	112186271	A	T	112186271	3	4	57	1	0	0	0	0	1	0	0	0	108	333	12	5	2795	5	ACAD10	12	112186271	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	2644854	112186271	21665624	52	4007											
HSPH1	10808	hgsc.bcm.edu	37	13	31711636	31711636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	31711636	A	C	31711636	3	2	57	1	0	0	0	0	1	0	0	0	7438	43	2	5	184	5	HSPH1	13	31711636	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10		31711636	83458242	53	4008											
KIAA1409	0	hgsc.bcm.edu	37	14	93994955	93994955	+	Silent	SNP	T	T	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	93994955	T	C	93994955	2	2	57	1	0	0	0	0	0	0	0	1	8237	1722	60	3		3	KIAA1409	14	93994955	Silent	SNP	T	TCGA-AK-3428-01A-02D-1361-10		93994955	13354585	54	4009											
DUOX2	50506	hgsc.bcm.edu;ucsc.edu	37	15	45388135	45388135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	45388135	G	A	45388135	3	1	57	1	0	0	0	0	1	0	0	0	4803	1232	43	2	695	2	DUOX2	15	45388135	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10		45388135	57143257	55	4010											
CHSY1	22856	hgsc.bcm.edu;ucsc.edu	37	15	101717750	101717750	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	101717750	C	G	101717750	3	3	57	1	0	0	0	0	1	0	0	0	3414	478	17	4	160	4	CHSY1	15	101717750	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	56329615	101717750	813642	56	4011											
SEZ6L2	26470	hgsc.bcm.edu;ucsc.edu	37	16	29884668	29884668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	29884668	G	T	29884668	3	4	57	1	0	0	0	0	1	0	0	0	14157	942	33	4	410	4	SEZ6L2	16	29884668	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10		29884668	60470085	57	4012											
WWOX	51741	hgsc.bcm.edu;ucsc.edu	37	16	78466519	78466519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	78466519	G	T	78466519	3	4	57	1	0	0	0	0	1	0	0	0	17426	1145	40	4	1018	4	WWOX	16	78466519	Missense_Mutation	SNP	G	TCGA-AK-3428-01A-02D-1361-10	48581851	78466519	11888234	58	4013											
GLP2R	9340	hgsc.bcm.edu;ucsc.edu	37	17	9745863	9745863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	9745863	C	T	9745863	3	4	57	1	0	0	0	0	1	0	0	0	6460	536	19	1	448	1	GLP2R	17	9745863	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10		9745863	71449347	59	4014											
TRIM16	10626	hgsc.bcm.edu	37	17	15539426	15539426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	15539426	C	T	15539426	3	4	57	1	0	0	0	0	1	0	0	0	16503	681	24	2	937	2	TRIM16	17	15539426	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	5793563	15539426	65655784	60	4015											
FLII	2314	hgsc.bcm.edu;ucsc.edu	37	17	18156764	18156764	+	Silent	SNP	A	A	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	18156764	A	T	18156764	2	4	57	1	0	0	0	0	0	0	0	1	5932	10	1	5		5	FLII	17	18156764	Silent	SNP	A	TCGA-AK-3428-01A-02D-1361-10	2617338	18156764	63038446	61	4016											
ELP2	55250	hgsc.bcm.edu	37	18	33709981	33709981	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	33709981	A	T	33709981	4	4	57	1	0	0	0	0	0	1	0	0	5082	180	7	5	87	5	ELP2	18	33709981	Nonsense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10		33709981	44367267	62	4017											
SH3GL1	6455	hgsc.bcm.edu	37	19	4363421	4363421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	4363421	T	C	4363421	3	2	57	1	0	0	0	0	1	0	0	0	14263	1638	57	3	448	3	SH3GL1	19	4363421	Missense_Mutation	SNP	T	TCGA-AK-3428-01A-02D-1361-10		4363421	54765562	63	4018											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9074828	9074828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	9074828	C	T	9074828	3	4	57	1	0	0	0	0	1	0	0	0	9980	478	17	2	31233	2	MUC16	19	9074828	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	4711407	9074828	50054155	64	4019											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9091029	9091029	+	Silent	SNP	T	T	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	9091029	T	C	9091029	2	2	57	1	0	0	0	0	0	0	0	1	9980	1422	50	3		3	MUC16	19	9091029	Silent	SNP	T	TCGA-AK-3428-01A-02D-1361-10	16201	9091029	50037954	65	4020											
BRD4	23476	hgsc.bcm.edu;ucsc.edu	37	19	15360094	15360095	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	-	15360095	GG	-	15360094	7	5	57	1	0	1	0	1	0	0	0	0	1506	987	35	0	1973	0	BRD4	19	15360094	Frame_Shift_Del	DEL	GG	TCGA-AK-3428-01A-02D-1361-10	6269065	15360094	43768889	66	4021											
CYP4F11	57834	hgsc.bcm.edu	37	19	16035643	16035643	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	16035643	A	C	16035643	3	2	57	1	0	0	0	0	1	0	0	0	4188	14	1	5	1031	5	CYP4F11	19	16035643	Missense_Mutation	SNP	A	TCGA-AK-3428-01A-02D-1361-10	675549	16035643	43093340	67	4022											
PDE4C	5143	hgsc.bcm.edu	37	19	18329004	18329004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	18329004	C	T	18329004	3	4	57	1	0	0	0	0	1	0	0	0	11648	884	31	1	873	1	PDE4C	19	18329004	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	2293361	18329004	40799979	68	4023											
MKKS	8195	hgsc.bcm.edu;ucsc.edu	37	20	10393758	10393758	+	Silent	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	10393758	G	A	10393758	2	1	57	1	0	0	0	0	0	0	0	1	9607	987	35	2		2	MKKS	20	10393758	Silent	SNP	G	TCGA-AK-3428-01A-02D-1361-10		10393758	52631762	69	4024											
DHX35	60625	hgsc.bcm.edu	37	20	37597791	37597791	+	Silent	SNP	G	G	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	37597791	G	T	37597791	2	4	57	1	0	0	0	0	0	0	0	1	4510	1103	39	4		4	DHX35	20	37597791	Silent	SNP	G	TCGA-AK-3428-01A-02D-1361-10	27204033	37597791	25427729	70	4025											
CHD6	84181	hgsc.bcm.edu;ucsc.edu	37	20	40081483	40081483	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	G	40081483	C	G	40081483	3	3	57	1	0	0	0	0	1	0	0	0	3331	884	31	4	4995	4	CHD6	20	40081483	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	2483692	40081483	22944037	71	4026											
EIF4ENIF1	56478	hgsc.bcm.edu;ucsc.edu	37	22	31851207	31851207	+	Silent	SNP	A	A	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	31851207	A	T	31851207	2	4	57	1	0	0	0	0	0	0	0	1	5037	10	1	5		5	EIF4ENIF1	22	31851207	Silent	SNP	A	TCGA-AK-3428-01A-02D-1361-10		31851207	19453359	72	4027											
EP300	2033	hgsc.bcm.edu;ucsc.edu	37	22	41536219	41536219	+	Silent	SNP	T	T	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	41536219	T	C	41536219	2	2	57	1	0	0	0	0	0	0	0	1	5150	1538	54	3		3	EP300	22	41536219	Silent	SNP	T	TCGA-AK-3428-01A-02D-1361-10	9685012	41536219	9768347	73	4028											
TUBGCP6	85378	hgsc.bcm.edu;ucsc.edu	37	22	50665215	50665215	+	Silent	SNP	C	C	T	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	T	50665215	C	T	50665215	2	4	57	1	0	0	0	0	0	0	0	1	16782	796	28	2		2	TUBGCP6	22	50665215	Silent	SNP	C	TCGA-AK-3428-01A-02D-1361-10	9128996	50665215	639351	74	4029											
EIF2S3	1968	hgsc.bcm.edu;ucsc.edu	37	X	24086218	24086218	+	Silent	SNP	T	T	C	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	C	24086218	T	C	24086218	2	2	57	1	0	0	0	0	0	0	0	1	5013	1654	58	3		3	EIF2S3	23	24086218	Silent	SNP	T	TCGA-AK-3428-01A-02D-1361-10		24086218	131184342	75	4030											
TRMT2B	79979	hgsc.bcm.edu;ucsc.edu	37	X	100265618	100265618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	100265618	C	A	100265618	3	1	57	1	0	0	0	0	1	0	0	0	16578	477	17	4	51	4	TRMT2B	23	100265618	Missense_Mutation	SNP	C	TCGA-AK-3428-01A-02D-1361-10	76179400	100265618	55004942	76	4031											
COL4A5	1287	hgsc.bcm.edu;ucsc.edu	37	X	107930860	107930860	+	Silent	SNP	G	G	A	novel		TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6fc3e193-399a-4434-9aef-8eab73ad7b4d	621bf83f-cd42-415e-92df-6f77ac4ccbbc	A	107930860	G	A	107930860	2	1	57	1	0	0	0	0	0	0	0	1	3696	991	35	2		2	COL4A5	23	107930860	Silent	SNP	G	TCGA-AK-3428-01A-02D-1361-10	7665242	107930860	47339700	77	4032											
DVL1	1855	broad.mit.edu	37	1	1275427	1275427	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	1275427	A	A	1275427	3	1	58	1	0	0	0	0	1	0	0	0	4837	478	17	4	1144	4	DVL1	1	1275427	Missense_Mutation	SNP	C	TCGA-AK-3429-01A-02D-1386-10		1275427	247975194	1	4033											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu	37	1	11319454	11319454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	G	11319454	C	G	11319454	3	3	58	1	0	0	0	0	1	0	0	0	9961	661	23	4	7864	4	MTOR	1	11319454	Missense_Mutation	SNP	C	TCGA-AK-3429-01A-02D-1386-10	10044027	11319454	237931167	2	4034											
PRAMEF6	440561	broad.mit.edu	37	1	13001258	13001258	+	Missense_Mutation	SNP	C	T	T	rs3927874		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	T	13001258	T	T	13001258	3	4	58	1	0	0	0	0	1	0	0	0	12448	913	32	2	1013	2	PRAMEF6	1	13001258	Missense_Mutation	SNP	C	TCGA-AK-3429-01A-02D-1386-10	1681804	13001258	236249363	3	4035											
PRDM2	7799	hgsc.bcm.edu	37	1	14075880	14075880	+	Silent	SNP	C	C	T	rs75417771	bycluster;byfrequency;by1000genomes	TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	T	14075880	C	T	14075880	2	4	58	1	0	0	0	0	0	0	0	1	12468	680	24	2		2	PRDM2	1	14075880	Silent	SNP	C	TCGA-AK-3429-01A-02D-1386-10	1074622	14075880	235174741	4	4036											
DEM1	0	broad.mit.edu;ucsc.edu	37	1	40980259	40980259	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	G	40980259	G	G	40980259	3	3	58	1	0	0	0	0	1	0	0	0	4427	1551	54	5	45	5	DEM1	1	40980259	Missense_Mutation	SNP	T	TCGA-AK-3429-01A-02D-1386-10	26904379	40980259	208270362	5	4037											
NAB1	4664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	191524231	191524231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	T	191524231	C	T	191524231	3	4	58	1	0	0	0	0	1	0	0	0	10138	855	30	2	331	2	NAB1	2	191524231	Missense_Mutation	SNP	C	TCGA-AK-3429-01A-02D-1386-10		191524231	51675142	6	4038											
SETD2	29072	broad.mit.edu	37	3	47058513	47058513	+	3'UTR	SNP	G	A	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	47058513	A	A	47058513	1	1	58	0	1	0	0	0	0	0	0	0	14144	1015	35	2		2	SETD2	3	47058513	3'UTR	SNP	G	TCGA-AK-3429-01A-02D-1386-10		47058513	150963917	7	4039											
GATA2	2624	broad.mit.edu	37	3	128205185	128205185	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	-	128205185	-	-	128205185	7	5	58	1	0	1	0	1	0	0	0	0	6261	1116	39	0	1202	0	GATA2	3	128205185	Frame_Shift_Del	DEL	G	TCGA-AK-3429-01A-02D-1386-10	81146672	128205185	69817245	8	4040											
XRN1	54464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	142037709	142037709	+	Silent	SNP	A	A	G	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	G	142037709	A	G	142037709	2	3	58	1	0	0	0	0	0	0	0	1	17471	69	3	3		3	XRN1	3	142037709	Silent	SNP	A	TCGA-AK-3429-01A-02D-1386-10	13832524	142037709	55984721	9	4041											
MUC4	4585	hgsc.bcm.edu	37	3	195513694	195513694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	195513694	G	A	195513694	3	1	58	1	0	0	0	0	1	0	0	0	9985	1000	35	2		2	MUC4	3	195513694	Missense_Mutation	SNP	G	TCGA-AK-3429-01A-02D-1386-10	53475985	195513694	2508736	10	4042											
TRPC7	57113	broad.mit.edu;hgsc.bcm.edu	37	5	135692564	135692564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	135692564	G	A	135692564	3	1	58	1	0	0	0	0	1	0	0	0	16596	1087	38	1	2120	1	TRPC7	5	135692564	Missense_Mutation	SNP	G	TCGA-AK-3429-01A-02D-1386-10		135692564	45222696	11	4043											
SGK1	6446	hgsc.bcm.edu;ucsc.edu	37	6	134495942	134495943	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	-	134495943	TC	-	134495942	7	5	58	1	0	1	0	1	0	0	0	0	14220	1667	58	0	1339	0	SGK1	6	134495942	Frame_Shift_Del	DEL	TC	TCGA-AK-3429-01A-02D-1386-10		134495942	36619125	12	4044											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82580448	82580448	+	Silent	SNP	C	C	T	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	T	82580448	C	T	82580448	2	4	58	1	0	0	0	0	0	0	0	1	11590	639	23	1		1	PCLO	7	82580448	Silent	SNP	C	TCGA-AK-3429-01A-02D-1386-10		82580448	76558215	13	4045											
ANGPT1	284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	108334357	108334357	+	Splice_Site	SNP	C	C	G	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	G	108334357	C	G	108334357	5	3	58	1	0	0	0	0	0	0	1	0	610	579	20	4	945	4	ANGPT1	8	108334357	Splice_Site	SNP	C	TCGA-AK-3429-01A-02D-1386-10		108334357	38029665	14	4046											
RECQL4	9401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145737152	145737152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	145737152	C	A	145737152	3	1	58	1	0	0	0	0	1	0	0	0	13215	680	24	4	220	4	RECQL4	8	145737152	Missense_Mutation	SNP	C	TCGA-AK-3429-01A-02D-1386-10	37402795	145737152	626870	15	4047											
C9orf93	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	15777711	15777711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	G	15777711	A	G	15777711	3	3	58	1	0	0	0	0	1	0	0	0	2508	179	7	3	2855	3	C9orf93	9	15777711	Missense_Mutation	SNP	A	TCGA-AK-3429-01A-02D-1386-10		15777711	125435720	16	4048											
NOL8	55035	hgsc.bcm.edu;ucsc.edu	37	9	95069939	95069939	+	RNA	SNP	T	T	C	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	C	95069939	T	C	95069939	1	2	58	0	1	0	0	0	0	0	0	0	10534	1624	56	3		3	NOL8	9	95069939	RNA	SNP	T	TCGA-AK-3429-01A-02D-1386-10	79292228	95069939	46143492	17	4049											
DBC1	1620	broad.mit.edu;hgsc.bcm.edu	37	9	121929960	121929960	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	121929960	T	A	121929960	3	1	58	1	0	0	0	0	1	0	0	0	4249	1406	49	5	601	5	DBC1	9	121929960	Missense_Mutation	SNP	T	TCGA-AK-3429-01A-02D-1386-10	26860021	121929960	19283471	18	4050											
C11orf57	55216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111946306	111946306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	111946306	G	A	111946306	3	1	58	1	0	0	0	0	1	0	0	0	1652	1116	39	1	10	1	C11orf57	11	111946306	Missense_Mutation	SNP	G	TCGA-AK-3429-01A-02D-1386-10		111946306	23060210	19	4051											
NOP2	4839	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6669891	6669891	+	Silent	SNP	G	G	T	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	T	6669891	G	T	6669891	2	4	58	1	0	0	0	0	0	0	0	1	10545	1335	47	4		4	NOP2	12	6669891	Silent	SNP	G	TCGA-AK-3429-01A-02D-1386-10		6669891	127182004	20	4052											
NCOR2	9612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124841254	124841254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	124841254	G	A	124841254	3	1	58	1	0	0	0	0	1	0	0	0	10243	1232	43	2	4469	2	NCOR2	12	124841254	Missense_Mutation	SNP	G	TCGA-AK-3429-01A-02D-1386-10	118171363	124841254	9010641	21	4053											
ATP12A	479	broad.mit.edu;ucsc.edu	37	13	25276072	25276072	+	Splice_Site	SNP	G	T	T	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	T	25276072	T	T	25276072	5	4	58	1	0	0	0	0	0	0	1	0	1122	1014	35	4	1953	4	ATP12A	13	25276072	Splice_Site	SNP	G	TCGA-AK-3429-01A-02D-1386-10		25276072	89893806	22	4054											
FLT3	2322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	28608527	28608527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	T	28608527	G	T	28608527	3	4	58	1	0	0	0	0	1	0	0	0	5949	1357	47	4	1414	4	FLT3	13	28608527	Missense_Mutation	SNP	G	TCGA-AK-3429-01A-02D-1386-10	3332455	28608527	86561351	23	4055											
HERC2	8924	broad.mit.edu;ucsc.edu	37	15	28446698	28446698	+	Silent	SNP	A	G	G	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	G	28446698	G	G	28446698	2	3	58	1	0	0	0	0	0	0	0	1	7065	407	15	3		3	HERC2	15	28446698	Silent	SNP	A	TCGA-AK-3429-01A-02D-1386-10		28446698	74084694	24	4056											
UBR1	197131	broad.mit.edu;ucsc.edu	37	15	43299453	43299453	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	C	43299453	C	C	43299453	3	2	58	1	0	0	0	0	1	0	0	0	16913	101	4	5	2082	5	UBR1	15	43299453	Missense_Mutation	SNP	A	TCGA-AK-3429-01A-02D-1386-10	14852755	43299453	59231939	25	4057											
SYNM	23336	broad.mit.edu;ucsc.edu	37	15	99670374	99670374	+	Silent	SNP	T	C	C	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	C	99670374	C	C	99670374	2	2	58	1	0	0	0	0	0	0	0	1	15467	1567	55	3		3	SYNM	15	99670374	Silent	SNP	T	TCGA-AK-3429-01A-02D-1386-10	56370921	99670374	2861018	26	4058											
RUNDC2A	0	broad.mit.edu;ucsc.edu	37	16	12142415	12142415	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	C	12142415	C	C	12142415	3	2	58	1	0	0	0	0	1	0	0	0	13756	1435	50	3	712	3	RUNDC2A	16	12142415	Missense_Mutation	SNP	T	TCGA-AK-3429-01A-02D-1386-10		12142415	78212338	27	4059											
METT10D	0	broad.mit.edu;hgsc.bcm.edu	37	17	2323872	2323872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	2323872	G	A	2323872	3	1	58	1	0	0	0	0	1	0	0	0	9497	1174	41	2	611	2	METT10D	17	2323872	Missense_Mutation	SNP	G	TCGA-AK-3429-01A-02D-1386-10		2323872	78871338	28	4060											
ADNP2	22850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	77894266	77894266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	77894266	C	A	77894266	3	1	58	1	0	0	0	0	1	0	0	0	324	623	22	4	980	4	ADNP2	18	77894266	Missense_Mutation	SNP	C	TCGA-AK-3429-01A-02D-1386-10		77894266	182982	29	4061											
LRRC8E	80131	broad.mit.edu	37	19	7964517	7964517	+	Silent	SNP	C	T	T	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	T	7964517	T	T	7964517	2	4	58	1	0	0	0	0	0	0	0	1	9032	874	31	1		1	LRRC8E	19	7964517	Silent	SNP	C	TCGA-AK-3429-01A-02D-1386-10		7964517	51164466	30	4062											
DDA1	79016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17425185	17425185	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	A	17425185	C	A	17425185	4	1	58	1	0	0	0	0	0	1	0	0	4322	518	18	4	133	4	DDA1	19	17425185	Nonsense_Mutation	SNP	C	TCGA-AK-3429-01A-02D-1386-10	9460668	17425185	41703798	31	4063											
ZNF43	7594	broad.mit.edu	37	19	21992038	21992038	+	Silent	SNP	A	G	G	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	G	21992038	G	G	21992038	2	3	58	1	0	0	0	0	0	0	0	1	17915	359	13	3		3	ZNF43	19	21992038	Silent	SNP	A	TCGA-AK-3429-01A-02D-1386-10	4566853	21992038	37136945	32	4064											
PCK1	5105	hgsc.bcm.edu;ucsc.edu	37	20	56138155	56138157	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	ATC	ATC	ATC	-	ATC	ATC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	-	56138157	ATC	-	56138155	7	5	58	1	0	1	0	1	0	0	0	0	11588	333	12	0	696	0	PCK1	20	56138155	In_Frame_Del	DEL	ATC	TCGA-AK-3429-01A-02D-1386-10		56138155	6887365	33	4065											
FAM3A	60343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153736831	153736831	+	Silent	SNP	C	C	T	novel		TCGA-AK-3429-01A-02D-1386-10	TCGA-AK-3429-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fa51dce9-2101-4af7-9280-4bad56b6848e	e287ef35-f81a-4d6f-a4d7-13871b8bf821	T	153736831	C	T	153736831	2	4	58	1	0	0	0	0	0	0	0	1	5563	726	26	2		2	FAM3A	23	153736831	Silent	SNP	C	TCGA-AK-3429-01A-02D-1386-10		153736831	1533729	34	4066											
KIAA1751	85452	broad.mit.edu;ucsc.edu	37	1	1919956	1919956	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	1919956	A	A	1919956	3	1	59	1	0	0	0	0	1	0	0	0	8263	912	32	4	2057	4	KIAA1751	1	1919956	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10		1919956	247330665	1	4067											
NBPF1	55672	broad.mit.edu;hgsc.bcm.edu	37	1	16913638	16913638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	16913638	T	G	16913638	3	3	59	1	0	0	0	0	1	0	0	0	10199	1464	51	5	2815	5	NBPF1	1	16913638	Missense_Mutation	SNP	T	TCGA-AK-3430-01A-01D-1251-10	14993682	16913638	232336983	2	4068											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19499967	19499967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	19499967	C	A	19499967	3	1	59	1	0	0	0	0	1	0	0	0	16916	652	23	4	12756	4	UBR4	1	19499967	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	2586329	19499967	229750654	3	4069											
ZCCHC17	51538	hgsc.bcm.edu;ucsc.edu	37	1	31836865	31836884	+	Frame_Shift_Del	DEL	AATTTTCTTTTCAGGAGAAG	AATTTTCTTTTCAGGAGAAG	-	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	AATTTTCTTTTCAGGAGAAG	AATTTTCTTTTCAGGAGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	-	31836884	AATTTTCTTTTCAGGAGAAG	-	31836865	7	5	59	1	0	1	0	1	0	0	0	0	17597	29	1	0		0	ZCCHC17	1	31836865	Frame_Shift_Del	DEL	AATTTTCTTTTCAGGAGAAG	TCGA-AK-3430-01A-01D-1251-10	12336898	31836865	217413756	4	4070											
SGIP1	84251	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67147913	67147913	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	-	67147913	T	-	67147913	7	5	59	1	0	1	0	1	0	0	0	0	14219	1490	52	0	1234	0	SGIP1	1	67147913	Frame_Shift_Del	DEL	T	TCGA-AK-3430-01A-01D-1251-10	35311048	67147913	182102708	5	4071											
WDR77	79084	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111990200	111990200	+	Splice_Site	SNP	T	T	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	111990200	T	A	111990200	5	1	59	1	0	0	0	0	0	0	1	0	17339	1594	55	5	760	5	WDR77	1	111990200	Splice_Site	SNP	T	TCGA-AK-3430-01A-01D-1251-10	44842287	111990200	137260421	6	4072											
ROBLD3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156025137	156025137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	156025137	A	C	156025137	3	2	59	1	0	0	0	0	1	0	0	0	13525	43	2	5	158	5	ROBLD3	1	156025137	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10	44034937	156025137	93225484	7	4073											
TDRD5	163589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	179620176	179620176	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	179620176	G	C	179620176	3	2	59	1	0	0	0	0	1	0	0	0	15745	1377	48	4	2017	4	TDRD5	1	179620176	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	23595039	179620176	69630445	8	4074											
PTPRC	5788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	198723495	198723495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	198723495	G	T	198723495	3	4	59	1	0	0	0	0	1	0	0	0	12810	971	34	4	3734	4	PTPRC	1	198723495	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	19103319	198723495	50527126	9	4075											
USH2A	7399	hgsc.bcm.edu;ucsc.edu	37	1	215823997	215823998	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	215823998	-	T	215823997	7	5	59	1	0	1	1	0	0	0	0	0	17048	796	28	0	1360	0	USH2A	1	215823997	Frame_Shift_Ins	INS	-	TCGA-AK-3430-01A-01D-1251-10	17100502	215823997	33426624	10	4076											
ITSN2	50618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24469086	24469086	+	Silent	SNP	A	A	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	24469086	A	G	24469086	2	3	59	1	0	0	0	0	0	0	0	1	7934	98	4	3		3	ITSN2	2	24469086	Silent	SNP	A	TCGA-AK-3430-01A-01D-1251-10		24469086	218730287	11	4077											
ITGB6	3694	broad.mit.edu;ucsc.edu	37	2	160983104	160983104	+	Missense_Mutation	SNP	C	A	A	rs143914557		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	160983104	A	A	160983104	3	1	59	1	0	0	0	0	1	0	0	0	7906	884	31	4	717	4	ITGB6	2	160983104	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	136514018	160983104	82216269	12	4078											
DHX15	1665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	24572443	24572443	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	24572443	G	A	24572443	4	1	59	1	0	0	0	0	0	1	0	0	4503	1095	38	1	1900	1	DHX15	4	24572443	Nonsense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10		24572443	166581833	13	4079	47	2									
DHX15	1665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	24572444	24572444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	24572444	C	T	24572444	3	4	59	1	0	0	0	0	1	0	0	0	4503	710	25	2	1901	2	DHX15	4	24572444	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	1	24572444	166581832	14	4080	47	2									
EGF	1950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	110909739	110909739	+	Splice_Site	SNP	G	G	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	110909739	G	T	110909739	5	4	59	1	0	0	0	0	0	0	1	0	4964	956	33	4	2678	4	EGF	4	110909739	Splice_Site	SNP	G	TCGA-AK-3430-01A-01D-1251-10	86337295	110909739	80244537	15	4081											
C4orf31	0	broad.mit.edu;ucsc.edu	37	4	121958431	121958431	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	121958431	A	A	121958431	3	1	59	1	0	0	0	0	1	0	0	0	2263	565	20	4	1015	4	C4orf31	4	121958431	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	11048692	121958431	69195845	16	4082											
C5orf42	65250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	37168941	37168941	+	Silent	SNP	T	T	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	37168941	T	C	37168941	2	2	59	1	0	0	0	0	0	0	0	1	2303	1490	52	3		3	C5orf42	5	37168941	Silent	SNP	T	TCGA-AK-3430-01A-01D-1251-10		37168941	143746319	17	4083											
CD180	4064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66479407	66479407	+	Silent	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	66479407	G	A	66479407	2	1	59	1	0	0	0	0	0	0	0	1	2974	962	34	2		2	CD180	5	66479407	Silent	SNP	G	TCGA-AK-3430-01A-01D-1251-10	29310466	66479407	114435853	18	4084											
JMY	133746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	78573870	78573870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	78573870	G	A	78573870	3	1	59	1	0	0	0	0	1	0	0	0	7964	1290	45	2	1176	2	JMY	5	78573870	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	12094463	78573870	102341390	19	4085											
SHROOM1	134549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	132160424	132160424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	132160424	G	A	132160424	3	1	59	1	0	0	0	0	1	0	0	0	14306	1261	44	2	1454	2	SHROOM1	5	132160424	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	53586554	132160424	48754836	20	4086											
PCDHB3	56132	hgsc.bcm.edu	37	5	140481633	140481633	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	-	140481633	C	-	140481633	7	5	59	1	0	1	0	1	0	0	0	0	11550	739	26	0	1402	0	PCDHB3	5	140481633	Frame_Shift_Del	DEL	C	TCGA-AK-3430-01A-01D-1251-10	8321209	140481633	40433627	21	4087											
PPARGC1B	133522	broad.mit.edu;hgsc.bcm.edu	37	5	149212567	149212567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	149212567	C	T	149212567	3	4	59	1	0	0	0	0	1	0	0	0	12308	739	26	2	956	2	PPARGC1B	5	149212567	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	8730934	149212567	31702693	22	4088											
EBF1	1879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	158250251	158250251	+	Silent	SNP	A	A	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	158250251	A	G	158250251	2	3	59	1	0	0	0	0	0	0	0	1	4882	98	4	3		3	EBF1	5	158250251	Silent	SNP	A	TCGA-AK-3430-01A-01D-1251-10	9037684	158250251	22665009	23	4089											
UBLCP1	134510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	158710292	158710292	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	158710292	A	C	158710292	3	2	59	1	0	0	0	0	1	0	0	0	16903	131	5	5	908	5	UBLCP1	5	158710292	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10	460041	158710292	22204968	24	4090											
SLC17A3	10786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	25850134	25850134	+	Silent	SNP	A	A	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	25850134	A	G	25850134	2	3	59	1	0	0	0	0	0	0	0	1	14431	98	4	3		3	SLC17A3	6	25850134	Silent	SNP	A	TCGA-AK-3430-01A-01D-1251-10		25850134	145264933	25	4091											
IL6	3569	hgsc.bcm.edu;ucsc.edu	37	7	22771126	22771126	+	Silent	SNP	T	T	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	22771126	T	G	22771126	2	3	59	1	0	0	0	0	0	0	0	1	7708	1538	54	5		5	IL6	7	22771126	Silent	SNP	T	TCGA-AK-3430-01A-01D-1251-10		22771126	136367537	26	4092											
PTPN12	5782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	77256021	77256021	+	Splice_Site	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	77256021	G	A	77256021	5	1	59	1	0	0	0	0	0	0	1	0	12792	1043	36	2	1075	2	PTPN12	7	77256021	Splice_Site	SNP	G	TCGA-AK-3430-01A-01D-1251-10	54484895	77256021	81882642	27	4093											
CNTNAP2	26047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	147336210	147336210	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	147336210	G	A	147336210	4	1	59	1	0	0	0	0	0	1	0	0	3649	1357	47	2	1960	2	CNTNAP2	7	147336210	Nonsense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	70080189	147336210	11802453	28	4094											
LONRF1	91694	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	12592860	12592860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	12592860	T	G	12592860	3	3	59	1	0	0	0	0	1	0	0	0	8901	1783	62	5	844	5	LONRF1	8	12592860	Missense_Mutation	SNP	T	TCGA-AK-3430-01A-01D-1251-10		12592860	133771162	29	4095											
MSR1	4481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	15977930	15977930	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	15977930	G	C	15977930	3	2	59	1	0	0	0	0	1	0	0	0	9893	1386	48	4	144	4	MSR1	8	15977930	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	3385070	15977930	130386092	30	4096											
CHD7	55636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	61763106	61763106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	61763106	G	A	61763106	3	1	59	1	0	0	0	0	1	0	0	0	3332	1058	37	1	5557	1	CHD7	8	61763106	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	45785176	61763106	84600916	31	4097											
SYBU	55638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110587762	110587762	+	Silent	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	110587762	G	A	110587762	2	1	59	1	0	0	0	0	0	0	0	1	15439	1252	44	2		2	SYBU	8	110587762	Silent	SNP	G	TCGA-AK-3430-01A-01D-1251-10	48824656	110587762	35776260	32	4098											
ZMYND11	10771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	225962	225962	+	Silent	SNP	T	T	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	225962	T	C	225962	2	2	59	1	0	0	0	0	0	0	0	1	17718	1838	64	3		3	ZMYND11	10	225962	Silent	SNP	T	TCGA-AK-3430-01A-01D-1251-10		225962	135308785	33	4099											
DRGX	644168	broad.mit.edu;ucsc.edu	37	10	50574424	50574424	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	50574424	A	A	50574424	3	1	59	1	0	0	0	0	1	0	0	0	4765	623	22	4	265	4	DRGX	10	50574424	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	50348462	50574424	84960323	34	4100											
CDHR1	92211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	85960393	85960393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	85960393	G	T	85960393	3	4	59	1	0	0	0	0	1	0	0	0	3120	1319	46	4	497	4	CDHR1	10	85960393	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	35385969	85960393	49574354	35	4101											
EXOC6	54536	hgsc.bcm.edu;ucsc.edu	37	10	94669364	94669364	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	94669364	A	C	94669364	3	2	59	1	0	0	0	0	1	0	0	0	5310	11	1	5	751	5	EXOC6	10	94669364	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10	8708971	94669364	40865383	36	4102											
LRP4	4038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	46898361	46898361	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	46898361	T	G	46898361	3	3	59	1	0	0	0	0	1	0	0	0	8966	1580	55	5	2479	5	LRP4	11	46898361	Missense_Mutation	SNP	T	TCGA-AK-3430-01A-01D-1251-10		46898361	88108155	37	4103											
ZFP91	80829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	58381764	58381764	+	Silent	SNP	A	A	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	58381764	A	G	58381764	2	3	59	1	0	0	0	0	0	0	0	1	17667	262	10	3		3	ZFP91	11	58381764	Silent	SNP	A	TCGA-AK-3430-01A-01D-1251-10	11483403	58381764	76624752	38	4104											
POLD3	10714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	74340306	74340306	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	-	74340306	A	-	74340306	7	5	59	1	0	1	0	1	0	0	0	0	12199	246	9	0	978	0	POLD3	11	74340306	Frame_Shift_Del	DEL	A	TCGA-AK-3430-01A-01D-1251-10	15958542	74340306	60666210	39	4105											
SLCO2B1	11309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	74876867	74876867	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	-	74876867	T	-	74876867	7	5	59	1	0	1	0	1	0	0	0	0	14740	1500	52	0	335	0	SLCO2B1	11	74876867	Frame_Shift_Del	DEL	T	TCGA-AK-3430-01A-01D-1251-10	536561	74876867	60129649	40	4106											
BCO2	83875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	112072899	112072899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	112072899	G	C	112072899	3	2	59	1	0	0	0	0	1	0	0	0	1385	1175	41	4	1210	4	BCO2	11	112072899	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	37196032	112072899	22933617	41	4107											
HYOU1	10525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118916498	118916498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	118916498	C	A	118916498	3	1	59	1	0	0	0	0	1	0	0	0	7477	855	30	4	74	4	HYOU1	11	118916498	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	6843599	118916498	16090018	42	4108											
OR10G4	390264	broad.mit.edu;hgsc.bcm.edu	37	11	123886795	123886795	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	123886795	C	T	123886795	4	4	59	1	0	0	0	0	0	1	0	0	10908	595	21	2	516	2	OR10G4	11	123886795	Nonsense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	4970297	123886795	11119721	43	4109											
MLL2	8085	broad.mit.edu;hgsc.bcm.edu	37	12	49444844	49444844	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	49444844	G	T	49444844	4	4	59	1	0	0	0	0	0	1	0	0	9628	1195	42	4	14171	4	MLL2	12	49444844	Nonsense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10		49444844	84407051	44	4110											
PDE1B	5153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54967242	54967242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	54967242	A	T	54967242	3	4	59	1	0	0	0	0	1	0	0	0	11641	130	5	5	1027	5	PDE1B	12	54967242	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10	5522398	54967242	78884653	45	4111											
RASSF9	9182	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	86199472	86199472	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	86199472	C	A	86199472	4	1	59	1	0	0	0	0	0	1	0	0	13106	835	29	4	995	4	RASSF9	12	86199472	Nonsense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	31232230	86199472	47652423	46	4112											
FREM2	341640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	39452971	39452971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	39452971	A	G	39452971	3	3	59	1	0	0	0	0	1	0	0	0	6052	131	5	3	8953	3	FREM2	13	39452971	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10		39452971	75716907	47	4113											
TPP2	7174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	103275378	103275378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	103275378	G	T	103275378	3	4	59	1	0	0	0	0	1	0	0	0	16424	1377	48	4	794	4	TPP2	13	103275378	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	63822407	103275378	11894500	48	4114											
RPGRIP1	57096	hgsc.bcm.edu;ucsc.edu	37	14	21793467	21793467	+	Silent	SNP	G	G	A	rs35207255	bycluster;by1000genomes	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	21793467	G	A	21793467	2	1	59	1	0	0	0	0	0	0	0	1	13562	1132	40	1		1	RPGRIP1	14	21793467	Silent	SNP	G	TCGA-AK-3430-01A-01D-1251-10		21793467	85556073	49	4115											
PRKD1	5587	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	30132916	30132916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	30132916	C	T	30132916	3	4	59	1	0	0	0	0	1	0	0	0	12528	835	29	2	2113	2	PRKD1	14	30132916	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	8339449	30132916	77216624	50	4116											
STON2	85439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	81736986	81736986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	81736986	G	A	81736986	3	1	59	1	0	0	0	0	1	0	0	0	15330	971	34	2	78	2	STON2	14	81736986	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	51604070	81736986	25612554	51	4117	48	2									
STON2	85439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	81736987	81736987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	81736987	C	T	81736987	3	4	59	1	0	0	0	0	1	0	0	0	15330	710	25	2	79	2	STON2	14	81736987	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	1	81736987	25612553	52	4118	48	2									
FBN1	2200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	48764807	48764807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	48764807	C	A	48764807	3	1	59	1	0	0	0	0	1	0	0	0	5709	855	30	4	4466	4	FBN1	15	48764807	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10		48764807	53766585	53	4119											
KIF22	3835	broad.mit.edu;hgsc.bcm.edu	37	16	29810383	29810383	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	-	29810383	A	-	29810383	7	5	59	1	0	1	0	1	0	0	0	0	8297	247	9	0	655	0	KIF22	16	29810383	Frame_Shift_Del	DEL	A	TCGA-AK-3430-01A-01D-1251-10		29810383	60544370	54	4120											
RAB11FIP4	84440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29857420	29857420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	29857420	A	G	29857420	3	3	59	1	0	0	0	0	1	0	0	0	12909	43	2	3	1784	3	RAB11FIP4	17	29857420	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10		29857420	51337790	55	4121											
GGNBP2	79893	hgsc.bcm.edu;ucsc.edu	37	17	34913158	34913158	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	-	34913158	C	-	34913158	7	5	59	1	0	1	0	1	0	0	0	0	6366	478	17	0	420	0	GGNBP2	17	34913158	Frame_Shift_Del	DEL	C	TCGA-AK-3430-01A-01D-1251-10	5055738	34913158	46282052	56	4122											
HAP1	9001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39889026	39889026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	39889026	G	A	39889026	3	1	59	1	0	0	0	0	1	0	0	0	6960	1348	47	2	1429	2	HAP1	17	39889026	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	4975868	39889026	41306184	57	4123											
MTMR4	9110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56581545	56581546	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	GT	56581546	-	GT	56581545	7	5	59	1	0	1	1	0	0	0	0	0	9953	652	23	0	2089	0	MTMR4	17	56581545	Frame_Shift_Ins	INS	-	TCGA-AK-3430-01A-01D-1251-10	16692519	56581545	24613665	58	4124											
LONP1	9361	broad.mit.edu;hgsc.bcm.edu	37	19	5699170	5699170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	5699170	A	T	5699170	3	4	59	1	0	0	0	0	1	0	0	0	8899	333	12	5	1362	5	LONP1	19	5699170	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10		5699170	53429813	59	4125											
TMEM145	284339	hgsc.bcm.edu;ucsc.edu	37	19	42821885	42821886	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	AC	42821886	-	AC	42821885	7	5	59	1	0	1	1	0	0	0	0	0	16071	1638	57	0	971	0	TMEM145	19	42821885	Frame_Shift_Ins	INS	-	TCGA-AK-3430-01A-01D-1251-10	37122715	42821885	16307098	60	4126											
CYTH2	9266	broad.mit.edu	37	19	48977567	48977567	+	Silent	SNP	C	T	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	48977567	T	T	48977567	2	4	59	1	0	0	0	0	0	0	0	1	4206	680	24	2		2	CYTH2	19	48977567	Silent	SNP	C	TCGA-AK-3430-01A-01D-1251-10	6155682	48977567	10151416	61	4127											
KIR3DL3	100133046	broad.mit.edu	37	19	55239272	55239272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	55239272	T	T	55239272	3	4	59	1	0	0	0	0	1	0	0	0	8329	623	22	2	565	2	KIR3DL3	19	55239272	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	6261705	55239272	3889711	62	4128											
ZNF548	147694	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57910589	57910590	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	57910590	-	T	57910589	7	5	59	1	0	1	1	0	0	0	0	0	17992	179	7	0	984	0	ZNF548	19	57910589	Frame_Shift_Ins	INS	-	TCGA-AK-3430-01A-01D-1251-10	2671317	57910589	1218394	63	4129											
ZNF343	79175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2464292	2464292	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	-	2464292	A	-	2464292	7	5	59	1	0	1	0	1	0	0	0	0	17870	130	5	0	488	0	ZNF343	20	2464292	Frame_Shift_Del	DEL	A	TCGA-AK-3430-01A-01D-1251-10		2464292	60561228	64	4130											
C20orf94	0	broad.mit.edu;hgsc.bcm.edu	37	20	10603312	10603312	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	10603312	A	C	10603312	3	2	59	1	0	0	0	0	1	0	0	0	2123	14	1	5	538	5	C20orf94	20	10603312	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10	8139020	10603312	52422208	65	4131											
NKX2-2	4821	broad.mit.edu	37	20	21493005	21493005	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	-	21493005	-	-	21493005	7	5	59	1	0	1	0	1	0	0	0	0	10457	1306	46	0	447	0	NKX2-2	20	21493005	Frame_Shift_Del	DEL	G	TCGA-AK-3430-01A-01D-1251-10	10889693	21493005	41532515	66	4132											
GNAS	2778	broad.mit.edu	37	20	57429460	57429460	+	Silent	SNP	C	A	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	57429460	A	A	57429460	2	1	59	1	0	0	0	0	0	0	0	1	6517	623	22	4		4	GNAS	20	57429460	Silent	SNP	C	TCGA-AK-3430-01A-01D-1251-10	35936455	57429460	5596060	67	4133											
TMPRSS15	5651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	19725219	19725219	+	Splice_Site	SNP	C	C	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	19725219	C	A	19725219	5	1	59	1	0	0	0	0	0	0	1	0	16258	521	18	4	1951	4	TMPRSS15	21	19725219	Splice_Site	SNP	C	TCGA-AK-3430-01A-01D-1251-10		19725219	28404676	68	4134											
GAB4	128954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	17472966	17472966	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	17472966	C	G	17472966	3	3	59	1	0	0	0	0	1	0	0	0	6158	768	27	4	1485	4	GAB4	22	17472966	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10		17472966	33831600	69	4135											
IGLL1	3543	broad.mit.edu;ucsc.edu	37	22	23915501	23915501	+	Silent	SNP	G	A	A	rs1064418	bycluster;byfrequency	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	23915501	A	A	23915501	2	1	59	1	0	0	0	0	0	0	0	1	7600	1136	40	1		1	IGLL1	22	23915501	Silent	SNP	G	TCGA-AK-3430-01A-01D-1251-10	6442535	23915501	27389065	70	4136											
SGSM1	129049	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	25282686	25282686	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	C	25282686	A	C	25282686	3	2	59	1	0	0	0	0	1	0	0	0	14235	11	1	5	1992	5	SGSM1	22	25282686	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10	1367185	25282686	26021880	71	4137											
HDAC10	83933	broad.mit.edu	37	22	50689480	50689480	+	Translation_Start_Site	SNP	C	A	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	50689480	A	A	50689480	1	1	59	1	0	0	0	0	0	0	0	0	7012	696	24	4		4	HDAC10	22	50689480	Translation_Start_Site	SNP	C	TCGA-AK-3430-01A-01D-1251-10	25406794	50689480	615086	72	4138											
EGFL6	25975	broad.mit.edu;hgsc.bcm.edu	37	X	13636139	13636139	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	13636139	A	T	13636139	3	4	59	1	0	0	0	0	1	0	0	0	4965	217	8	5	1099	5	EGFL6	23	13636139	Missense_Mutation	SNP	A	TCGA-AK-3430-01A-01D-1251-10		13636139	141634421	73	4139											
SHROOM4	57477	hgsc.bcm.edu	37	X	50350758	50350759	+	In_Frame_Ins	INS	-	-	TGCTGCTGCTGT	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	TGCTGCTGCTGT	50350759	-	TGCTGCTGCTGT	50350758	7	5	59	1	0	1	1	0	0	0	0	0	14309	912	32	0	1113	0	SHROOM4	23	50350758	In_Frame_Ins	INS	-	TCGA-AK-3430-01A-01D-1251-10	36714619	50350758	104919802	74	4140											
KDM5C	8242	hgsc.bcm.edu	37	X	53223905	53223905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	53223905	C	T	53223905	3	4	59	1	0	0	0	0	1	0	0	0	8142	864	30	2	1342	2	KDM5C	23	53223905	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	2873147	53223905	102046655	75	4141											
BHLHB9	80823	broad.mit.edu;hgsc.bcm.edu	37	X	102004560	102004560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	A	102004560	G	A	102004560	3	1	59	1	0	0	0	0	1	0	0	0	1420	1174	41	2	639	2	BHLHB9	23	102004560	Missense_Mutation	SNP	G	TCGA-AK-3430-01A-01D-1251-10	48780655	102004560	53266000	76	4142											
HCFC1	3054	hgsc.bcm.edu	37	X	153222971	153222972	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	G	153222972	-	G	153222971	7	5	59	1	0	1	1	0	0	0	0	0	6998	188	7	0	4016	0	HCFC1	23	153222971	Frame_Shift_Ins	INS	-	TCGA-AK-3430-01A-01D-1251-10	51218411	153222971	2047589	77	4143											
RAB39B	116442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	154490261	154490261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d9a311d-7ca1-4021-95dc-0d6716917938	239a2754-4a2e-48d1-89eb-3c91161fb67e	T	154490261	C	T	154490261	3	4	59	1	0	0	0	0	1	0	0	0	12943	710	25	2	176	2	RAB39B	23	154490261	Missense_Mutation	SNP	C	TCGA-AK-3430-01A-01D-1251-10	1267290	154490261	780299	78	4144											
VHL	7428	hgsc.bcm.edu	37	3	10183746	10183746	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AK-3430-01A-01W-1244-10	TCGA-AK-3430-10A-01W-1244-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	e06607ae-d7b1-4109-9e18-f42b3cc518e2	012aa7b4-8d61-4f85-9a3a-64cdb9f62ac0	-	10183746	C	-	10183746	7	5	60	1	0	1	0	1	0	0	0	0	17174	855	30	0	217	0	VHL	3	10183746	Frame_Shift_Del	DEL	C	TCGA-AK-3430-01A-01W-1244-10		10183746	187838684	1	4145											
MED18	54797	hgsc.bcm.edu;ucsc.edu	37	1	28657186	28657186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	28657186	C	A	28657186	3	1	61	1	0	0	0	0	1	0	0	0	9443	855	30	4	15	4	MED18	1	28657186	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10		28657186	220593435	1	4146											
AK5	26289	hgsc.bcm.edu	37	1	77759516	77759516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	77759516	G	T	77759516	3	4	61	1	0	0	0	0	1	0	0	0	443	1290	45	4	296	4	AK5	1	77759516	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	49102330	77759516	171491105	2	4147											
GBP4	115361	hgsc.bcm.edu;ucsc.edu	37	1	89656967	89656967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	89656967	T	A	89656967	3	1	61	1	0	0	0	0	1	0	0	0	6283	1551	54	5	1053	5	GBP4	1	89656967	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10	11897451	89656967	159593654	3	4148											
CCDC18	343099	hgsc.bcm.edu	37	1	93672722	93672722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	93672722	A	C	93672722	3	2	61	1	0	0	0	0	1	0	0	0	2796	14	1	5	1364	5	CCDC18	1	93672722	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	4015755	93672722	155577899	4	4149											
C1orf161	0	hgsc.bcm.edu	37	1	116670806	116670806	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	116670806	G	A	116670806	4	1	61	1	0	0	0	0	0	1	0	0	2011	1357	47	2	719	2	C1orf161	1	116670806	Nonsense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	22998084	116670806	132579815	5	4150											
PDE4DIP	9659	hgsc.bcm.edu	37	1	144864284	144864284	+	Silent	SNP	C	C	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	144864284	C	G	144864284	2	3	61	1	0	0	0	0	0	0	0	1	11650	465	17	4		4	PDE4DIP	1	144864284	Silent	SNP	C	TCGA-AK-3431-01A-02D-1361-10	28193478	144864284	104386337	6	4151											
NCSTN	23385	hgsc.bcm.edu	37	1	160313253	160313253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	160313253	T	A	160313253	3	1	61	1	0	0	0	0	1	0	0	0	10248	1841	64	5	69	5	NCSTN	1	160313253	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10	15448969	160313253	88937368	7	4152											
PIK3C2B	5287	hgsc.bcm.edu	37	1	204399130	204399130	+	Silent	SNP	T	T	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	204399130	T	G	204399130	2	3	61	1	0	0	0	0	0	0	0	1	11917	1538	54	5		5	PIK3C2B	1	204399130	Silent	SNP	T	TCGA-AK-3431-01A-02D-1361-10	44085877	204399130	44851491	8	4153											
LPIN1	23175	hgsc.bcm.edu;ucsc.edu	37	2	11932122	11932122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	11932122	C	T	11932122	3	4	61	1	0	0	0	0	1	0	0	0	8925	478	17	2	1730	2	LPIN1	2	11932122	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10		11932122	231267251	9	4154											
ZC3H6	376940	hgsc.bcm.edu;ucsc.edu	37	2	113080286	113080286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	113080286	A	G	113080286	3	3	61	1	0	0	0	0	1	0	0	0	17583	15	1	3	1181	3	ZC3H6	2	113080286	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	101148164	113080286	130119087	10	4155											
ZNF804A	91752	hgsc.bcm.edu;ucsc.edu	37	2	185800961	185800961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	185800961	C	A	185800961	3	1	61	1	0	0	0	0	1	0	0	0	18182	855	30	4	852	4	ZNF804A	2	185800961	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10	72720675	185800961	57398412	11	4156											
MOBKL3	0	hgsc.bcm.edu	37	2	198380863	198380863	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	198380863	A	T	198380863	3	4	61	1	0	0	0	0	1	0	0	0	9694	72	3	5	55	5	MOBKL3	2	198380863	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	12579902	198380863	44818510	12	4157											
STRADB	55437	hgsc.bcm.edu;ucsc.edu	37	2	202340447	202340447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	202340447	A	T	202340447	3	4	61	1	0	0	0	0	1	0	0	0	15337	130	5	5	552	5	STRADB	2	202340447	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	3959584	202340447	40858926	13	4158											
ZNF142	7701	hgsc.bcm.edu;ucsc.edu	37	2	219508795	219508795	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	219508795	G	C	219508795	3	2	61	1	0	0	0	0	1	0	0	0	17743	1319	46	4	2631	4	ZNF142	2	219508795	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	17168348	219508795	23690578	14	4159											
SETD2	29072	ucsc.edu	37	3	47058655	47058661	+	Frame_Shift_Del	DEL	CTTGGTT	CTTGGTT	-	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	CTTGGTT	CTTGGTT	CTTGGTT	-	CTTGGTT	CTTGGTT	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	-	47058661	CTTGGTT	-	47058655	7	5	61	1	0	1	0	1	0	0	0	0	14144	680	24	0	75	0	SETD2	3	47058655	Frame_Shift_Del	DEL	CTTGGTT	TCGA-AK-3431-01A-02D-1361-10		47058655	150963775	15	4160											
ATRIP	84126	hgsc.bcm.edu	37	3	48506401	48506401	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	48506401	G	T	48506401	4	4	61	1	0	0	0	0	0	1	0	0	1205	1175	41	4	2273	4	ATRIP	3	48506401	Nonsense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	1447746	48506401	149516029	16	4161											
PBRM1	55193	ucsc.edu	37	3	52702574	52702574	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	A	-	A	A	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	-	52702574	A	-	52702574	7	5	61	1	0	1	0	1	0	0	0	0	11498	214	8	0	4688	0	PBRM1	3	52702574	Frame_Shift_Del	DEL	A	TCGA-AK-3431-01A-02D-1361-10	4196173	52702574	145319856	17	4162											
CHDH	55349	hgsc.bcm.edu;ucsc.edu	37	3	53851850	53851850	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	53851850	T	G	53851850	3	3	61	1	0	0	0	0	1	0	0	0	3335	1841	64	5	49	5	CHDH	3	53851850	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10	1149276	53851850	144170580	18	4163											
CCDC80	151887	hgsc.bcm.edu;ucsc.edu	37	3	112357946	112357946	+	Silent	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	112357946	G	T	112357946	2	4	61	1	0	0	0	0	0	0	0	1	2856	1048	37	4		4	CCDC80	3	112357946	Silent	SNP	G	TCGA-AK-3431-01A-02D-1361-10	58506096	112357946	85664484	19	4164											
FETUB	26998	hgsc.bcm.edu;ucsc.edu	37	3	186370105	186370105	+	Silent	SNP	T	T	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	186370105	T	G	186370105	2	3	61	1	0	0	0	0	0	0	0	1	5828	1770	62	5		5	FETUB	3	186370105	Silent	SNP	T	TCGA-AK-3431-01A-02D-1361-10	74012159	186370105	11652325	20	4165											
PDE6B	5158	hgsc.bcm.edu;ucsc.edu	37	4	628559	628559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	628559	G	T	628559	3	4	61	1	0	0	0	0	1	0	0	0	11653	1203	42	4	568	4	PDE6B	4	628559	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10		628559	190525717	21	4166											
CMYA5	202333	hgsc.bcm.edu;ucsc.edu	37	5	79031960	79031960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	79031960	G	T	79031960	3	4	61	1	0	0	0	0	1	0	0	0	3592	942	33	4	7378	4	CMYA5	5	79031960	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10		79031960	101883300	22	4167											
FBXO9	26268	hgsc.bcm.edu	37	6	52945852	52945852	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	52945852	A	C	52945852	3	2	61	1	0	0	0	0	1	0	0	0	5769	14	1	5	549	5	FBXO9	6	52945852	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10		52945852	118169215	23	4168											
FAM184A	79632	hgsc.bcm.edu	37	6	119399382	119399382	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	119399382	T	G	119399382	3	3	61	1	0	0	0	0	1	0	0	0	5515	1580	55	5	3411	5	FAM184A	6	119399382	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10	66453530	119399382	51715685	24	4169											
PEX3	8504	hgsc.bcm.edu;ucsc.edu	37	6	143780242	143780242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	143780242	T	C	143780242	3	2	61	1	0	0	0	0	1	0	0	0	11754	1406	49	3	100	3	PEX3	6	143780242	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10	24380860	143780242	27334825	25	4170											
CARD11	84433	hgsc.bcm.edu;ucsc.edu	37	7	2951854	2951854	+	Silent	SNP	G	G	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	2951854	G	A	2951854	2	1	61	1	0	0	0	0	0	0	0	1	2647	1136	40	1		1	CARD11	7	2951854	Silent	SNP	G	TCGA-AK-3431-01A-02D-1361-10		2951854	156186809	26	4171											
SNX13	23161	hgsc.bcm.edu;ucsc.edu	37	7	17915357	17915357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	17915357	C	A	17915357	3	1	61	1	0	0	0	0	1	0	0	0	14897	739	26	4	2460	4	SNX13	7	17915357	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10	14963503	17915357	141223306	27	4172											
DMTF1	9988	hgsc.bcm.edu;ucsc.edu	37	7	86802901	86802901	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	86802901	A	T	86802901	3	4	61	1	0	0	0	0	1	0	0	0	4594	69	3	5	392	5	DMTF1	7	86802901	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	68887544	86802901	72335762	28	4173											
GTPBP10	85865	hgsc.bcm.edu;ucsc.edu	37	7	89983809	89983809	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	89983809	G	C	89983809	3	2	61	1	0	0	0	0	1	0	0	0	6886	1291	45	4	275	4	GTPBP10	7	89983809	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	3180908	89983809	69154854	29	4174											
SLC12A9	56996	hgsc.bcm.edu	37	7	100459532	100459532	+	Silent	SNP	C	C	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	100459532	C	T	100459532	2	4	61	1	0	0	0	0	0	0	0	1	14403	898	31	1		1	SLC12A9	7	100459532	Silent	SNP	C	TCGA-AK-3431-01A-02D-1361-10	10475723	100459532	58679131	30	4175											
KIAA1549	57670	hgsc.bcm.edu;ucsc.edu	37	7	138603070	138603070	+	Silent	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	138603070	G	T	138603070	2	4	61	1	0	0	0	0	0	0	0	1	8251	1335	47	4		4	KIAA1549	7	138603070	Silent	SNP	G	TCGA-AK-3431-01A-02D-1361-10	38143538	138603070	20535593	31	4176											
CNTNAP2	26047	hgsc.bcm.edu;ucsc.edu	37	7	147869410	147869410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	147869410	G	T	147869410	3	4	61	1	0	0	0	0	1	0	0	0	3649	991	35	4	2920	4	CNTNAP2	7	147869410	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	9266340	147869410	11269253	32	4177											
MYOM2	9172	hgsc.bcm.edu	37	8	2064039	2064039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	2064039	T	C	2064039	3	2	61	1	0	0	0	0	1	0	0	0	10099	1725	60	3	3457	3	MYOM2	8	2064039	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10		2064039	144299983	33	4178											
ADHFE1	137872	hgsc.bcm.edu	37	8	67380563	67380563	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	67380563	T	A	67380563	3	1	61	1	0	0	0	0	1	0	0	0	314	1809	63	5	1434	5	ADHFE1	8	67380563	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10	65316524	67380563	78983459	34	4179											
CNBD1	168975	hgsc.bcm.edu;ucsc.edu	37	8	87878755	87878755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	87878755	T	C	87878755	3	2	61	1	0	0	0	0	1	0	0	0	3593	1821	63	3	34	3	CNBD1	8	87878755	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10	20498192	87878755	58485267	35	4180											
DCAF13	25879	hgsc.bcm.edu	37	8	104444937	104444937	+	Silent	SNP	T	T	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	104444937	T	C	104444937	2	2	61	1	0	0	0	0	0	0	0	1	4268	1596	56	3		3	DCAF13	8	104444937	Silent	SNP	T	TCGA-AK-3431-01A-02D-1361-10	16566182	104444937	41919085	36	4181											
SNAPC3	6619	hgsc.bcm.edu;ucsc.edu	37	9	15453105	15453105	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	15453105	A	T	15453105	3	4	61	1	0	0	0	0	1	0	0	0	14849	69	3	5	908	5	SNAPC3	9	15453105	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10		15453105	125760326	37	4182											
IFNA8	3445	hgsc.bcm.edu	37	9	21409246	21409246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	21409246	G	C	21409246	3	2	61	1	0	0	0	0	1	0	0	0	7550	1377	48	4	73	4	IFNA8	9	21409246	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	5956141	21409246	119804185	38	4183											
C9orf153	389766	hgsc.bcm.edu;ucsc.edu	37	9	88844486	88844486	+	Silent	SNP	C	C	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	88844486	C	T	88844486	2	4	61	1	0	0	0	0	0	0	0	1	2466	680	24	2		2	C9orf153	9	88844486	Silent	SNP	C	TCGA-AK-3431-01A-02D-1361-10	67435240	88844486	52368945	39	4184											
CEP110	0	hgsc.bcm.edu;ucsc.edu	37	9	123930585	123930585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	123930585	C	G	123930585	3	3	61	1	0	0	0	0	1	0	0	0	3247	478	17	4	6198	4	CEP110	9	123930585	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10	35086099	123930585	17282846	40	4185											
CERCAM	51148	hgsc.bcm.edu	37	9	131185208	131185208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	131185208	G	A	131185208	3	1	61	1	0	0	0	0	1	0	0	0	3268	1377	48	2	265	2	CERCAM	9	131185208	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	7254623	131185208	10028223	41	4186											
ARHGAP12	94134	hgsc.bcm.edu;ucsc.edu	37	10	32098041	32098041	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	32098041	A	C	32098041	3	2	61	1	0	0	0	0	1	0	0	0	865	131	5	5	408	5	ARHGAP12	10	32098041	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10		32098041	103436706	42	4187											
UNC5B	219699	hgsc.bcm.edu	37	10	73057821	73057821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	73057821	G	A	73057821	3	1	61	1	0	0	0	0	1	0	0	0	17004	1377	48	2	2708	2	UNC5B	10	73057821	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	40959780	73057821	62476926	43	4188											
POLR3A	11128	hgsc.bcm.edu	37	10	79781733	79781733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	79781733	A	C	79781733	3	2	61	1	0	0	0	0	1	0	0	0	12235	98	4	5	3339	5	POLR3A	10	79781733	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	6723912	79781733	55753014	44	4189											
RAB11FIP2	22841	hgsc.bcm.edu;ucsc.edu	37	10	119798634	119798634	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	119798634	A	C	119798634	3	2	61	1	0	0	0	0	1	0	0	0	12907	333	12	5	436	5	RAB11FIP2	10	119798634	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	40016901	119798634	15736113	45	4190											
USH1C	10083	hgsc.bcm.edu;ucsc.edu	37	11	17523523	17523523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	17523523	A	G	17523523	3	3	61	1	0	0	0	0	1	0	0	0	17046	246	9	3	538	3	USH1C	11	17523523	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10		17523523	117482993	46	4191											
DDB1	1642	hgsc.bcm.edu	37	11	61081149	61081149	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	61081149	A	C	61081149	3	2	61	1	0	0	0	0	1	0	0	0	4325	11	1	5	1579	5	DDB1	11	61081149	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	43557626	61081149	73925367	47	4192											
FERMT3	83706	hgsc.bcm.edu	37	11	63979193	63979193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	63979193	T	G	63979193	3	3	61	1	0	0	0	0	1	0	0	0	5826	1522	53	5	778	5	FERMT3	11	63979193	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10	2898044	63979193	71027323	48	4193											
SYTL2	54843	hgsc.bcm.edu;ucsc.edu	37	11	85435949	85435949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	85435949	C	A	85435949	3	1	61	1	0	0	0	0	1	0	0	0	15495	622	22	4	2319	4	SYTL2	11	85435949	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10	21456756	85435949	49570567	49	4194											
DYNC2H1	79659	hgsc.bcm.edu;ucsc.edu	37	11	102991435	102991435	+	Silent	SNP	G	G	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	102991435	G	C	102991435	2	2	61	1	0	0	0	0	0	0	0	1	4848	1103	39	4		4	DYNC2H1	11	102991435	Silent	SNP	G	TCGA-AK-3431-01A-02D-1361-10	17555486	102991435	32015081	50	4195											
BCAT1	586	hgsc.bcm.edu;ucsc.edu	37	12	24985748	24985748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	24985748	G	T	24985748	3	4	61	1	0	0	0	0	1	0	0	0	1354	1377	48	4	219	4	BCAT1	12	24985748	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10		24985748	108866147	51	4196											
C12orf50	160419	hgsc.bcm.edu	37	12	88388466	88388466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	88388466	A	G	88388466	3	3	61	1	0	0	0	0	1	0	0	0	1697	449	16	3	736	3	C12orf50	12	88388466	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	63402718	88388466	45463429	52	4197											
FREM2	341640	hgsc.bcm.edu;ucsc.edu	37	13	39265788	39265788	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	39265788	A	C	39265788	3	2	61	1	0	0	0	0	1	0	0	0	6052	14	1	5	4309	5	FREM2	13	39265788	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10		39265788	75904090	53	4198											
MYO1E	4643	hgsc.bcm.edu	37	15	59528837	59528837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	59528837	T	C	59528837	3	2	61	1	0	0	0	0	1	0	0	0	10079	1821	63	3	3055	3	MYO1E	15	59528837	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10		59528837	43002555	54	4199											
VPS13C	54832	hgsc.bcm.edu	37	15	62238606	62238606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	62238606	A	G	62238606	3	3	61	1	0	0	0	0	1	0	0	0	17203	217	8	3	6577	3	VPS13C	15	62238606	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	2709769	62238606	40292786	55	4200											
BAIAP3	8938	hgsc.bcm.edu	37	16	1394310	1394310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	1394310	G	T	1394310	3	4	61	1	0	0	0	0	1	0	0	0	1304	1203	42	4	1765	4	BAIAP3	16	1394310	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10		1394310	88960443	56	4201											
SRRM2	23524	hgsc.bcm.edu	37	16	2816400	2816400	+	Silent	SNP	G	G	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	2816400	G	A	2816400	2	1	61	1	0	0	0	0	0	0	0	1	15181	1252	44	2		2	SRRM2	16	2816400	Silent	SNP	G	TCGA-AK-3431-01A-02D-1361-10	1422090	2816400	87538353	57	4202											
NFATC3	4775	hgsc.bcm.edu;ucsc.edu	37	16	68200896	68200896	+	Silent	SNP	A	A	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	68200896	A	T	68200896	2	4	61	1	0	0	0	0	0	0	0	1	10371	410	15	5		5	NFATC3	16	68200896	Silent	SNP	A	TCGA-AK-3431-01A-02D-1361-10	65384496	68200896	22153857	58	4203											
NFAT5	10725	hgsc.bcm.edu	37	16	69726498	69726498	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	69726498	C	G	69726498	3	3	61	1	0	0	0	0	1	0	0	0	10367	595	21	4	2820	4	NFAT5	16	69726498	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10	1525602	69726498	20628255	59	4204											
C16orf55	124045	hgsc.bcm.edu	37	16	89735835	89735835	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	89735835	A	C	89735835	3	2	61	1	0	0	0	0	1	0	0	0	1822	275	10	5	360	5	C16orf55	16	89735835	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	20009337	89735835	618918	60	4205											
SLFN5	162394	hgsc.bcm.edu;ucsc.edu	37	17	33586478	33586478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	33586478	G	T	33586478	3	4	61	1	0	0	0	0	1	0	0	0	14750	1348	47	4	771	4	SLFN5	17	33586478	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10		33586478	47608732	61	4206											
SDK2	54549	hgsc.bcm.edu	37	17	71418510	71418510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	71418510	C	T	71418510	3	4	61	1	0	0	0	0	1	0	0	0	13982	739	26	2	4681	2	SDK2	17	71418510	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10	37832032	71418510	9776700	62	4207											
NDC80	10403	hgsc.bcm.edu	37	18	2587917	2587917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	2587917	A	G	2587917	3	3	61	1	0	0	0	0	1	0	0	0	10249	14	1	3	784	3	NDC80	18	2587917	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10		2587917	75489331	63	4208											
CD97	976	hgsc.bcm.edu;ucsc.edu	37	19	14512530	14512530	+	Missense_Mutation	SNP	A	A	G	rs145167749	byfrequency	TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	14512530	A	G	14512530	3	3	61	1	0	0	0	0	1	0	0	0	3051	217	8	3	1183	3	CD97	19	14512530	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10		14512530	44616453	64	4209											
ERCC2	2068	hgsc.bcm.edu	37	19	45872351	45872351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	45872351	C	T	45872351	3	4	61	1	0	0	0	0	1	0	0	0	5215	739	26	2	2263	2	ERCC2	19	45872351	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10	31359821	45872351	13256632	65	4210											
ZNF577	84765	hgsc.bcm.edu;ucsc.edu	37	19	52376920	52376920	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	52376920	G	C	52376920	3	2	61	1	0	0	0	0	1	0	0	0	18021	942	33	4	1138	4	ZNF577	19	52376920	Missense_Mutation	SNP	G	TCGA-AK-3431-01A-02D-1361-10	6504569	52376920	6752063	66	4211											
C20orf30	0	hgsc.bcm.edu	37	20	5081570	5081570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	5081570	T	C	5081570	3	2	61	1	0	0	0	0	1	0	0	0	2112	1667	58	3	136	3	C20orf30	20	5081570	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10		5081570	57943950	67	4212											
C20orf26	26074	hgsc.bcm.edu;ucsc.edu	37	20	20269500	20269500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	20269500	A	G	20269500	3	3	61	1	0	0	0	0	1	0	0	0	2108	333	12	3	3162	3	C20orf26	20	20269500	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10	15187930	20269500	42756020	68	4213											
NCOA6	23054	hgsc.bcm.edu	37	20	33356290	33356290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	33356290	C	T	33356290	3	4	61	1	0	0	0	0	1	0	0	0	10240	855	30	2	5744	2	NCOA6	20	33356290	Missense_Mutation	SNP	C	TCGA-AK-3431-01A-02D-1361-10	13086790	33356290	29669230	69	4214											
TAF4	6874	hgsc.bcm.edu	37	20	60551323	60551323	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	A	60551323	T	A	60551323	3	1	61	1	0	0	0	0	1	0	0	0	15538	1838	64	5	102	5	TAF4	20	60551323	Missense_Mutation	SNP	T	TCGA-AK-3431-01A-02D-1361-10	27195033	60551323	2474197	70	4215											
MICAL3	57553	hgsc.bcm.edu	37	22	18389489	18389489	+	Silent	SNP	C	C	T	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	T	18389489	C	T	18389489	2	4	61	1	0	0	0	0	0	0	0	1	9578	680	24	2		2	MICAL3	22	18389489	Silent	SNP	C	TCGA-AK-3431-01A-02D-1361-10		18389489	32915077	71	4216											
MTMR3	8897	hgsc.bcm.edu	37	22	30403925	30403925	+	Silent	SNP	T	T	C	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	C	30403925	T	C	30403925	2	2	61	1	0	0	0	0	0	0	0	1	9952	1838	64	3		3	MTMR3	22	30403925	Silent	SNP	T	TCGA-AK-3431-01A-02D-1361-10	12014436	30403925	20900641	72	4217											
PLXNA3	55558	hgsc.bcm.edu;ucsc.edu	37	X	153699964	153699964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3431-01A-02D-1361-10	TCGA-AK-3431-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3edc98c2-fa19-4304-b755-eaa3c7977058	bcfea68f-0d4d-44f2-8d20-41bd03b717cb	G	153699964	A	G	153699964	3	3	61	1	0	0	0	0	1	0	0	0	12128	159	6	3	5625	3	PLXNA3	23	153699964	Missense_Mutation	SNP	A	TCGA-AK-3431-01A-02D-1361-10		153699964	1570596	73	4218											
KIAA1751	85452	hgsc.bcm.edu	37	1	1897857	1897857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	1897857	C	A	1897857	4	1	62	1	0	0	0	0	0	1	0	0	8263	835	29	4	962	4	KIAA1751	1	1897857	Nonsense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10		1897857	247352764	1	4219											
TCEA3	6920	hgsc.bcm.edu;ucsc.edu	37	1	23751094	23751094	+	Silent	SNP	G	G	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	23751094	G	A	23751094	2	1	62	1	0	0	0	0	0	0	0	1	15681	1335	47	2		2	TCEA3	1	23751094	Silent	SNP	G	TCGA-AK-3434-01A-02D-1361-10	21853237	23751094	225499527	2	4220											
PDE4DIP	9659	hgsc.bcm.edu	37	1	144864284	144864284	+	Silent	SNP	C	C	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	144864284	C	G	144864284	2	3	62	1	0	0	0	0	0	0	0	1	11650	465	17	4		4	PDE4DIP	1	144864284	Silent	SNP	C	TCGA-AK-3434-01A-02D-1361-10	121113190	144864284	104386337	3	4221											
ANKRD35	148741	hgsc.bcm.edu	37	1	145562502	145562504	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	-	145562504	GGC	-	145562502	7	5	62	1	0	1	0	1	0	0	0	0	664	1219	43	0	2228	0	ANKRD35	1	145562502	In_Frame_Del	DEL	GGC	TCGA-AK-3434-01A-02D-1361-10	698218	145562502	103688119	4	4222											
DISP1	84976	hgsc.bcm.edu	37	1	223116653	223116653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	223116653	A	G	223116653	3	3	62	1	0	0	0	0	1	0	0	0	4541	130	5	3	490	3	DISP1	1	223116653	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	77554151	223116653	26133968	5	4223											
PDIA6	10130	hgsc.bcm.edu;ucsc.edu	37	2	10924442	10924442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	10924442	T	A	10924442	3	1	62	1	0	0	0	0	1	0	0	0	11679	1551	54	5	61	5	PDIA6	2	10924442	Missense_Mutation	SNP	T	TCGA-AK-3434-01A-02D-1361-10		10924442	232274931	6	4224											
NCOA1	8648	hgsc.bcm.edu;ucsc.edu	37	2	24933874	24933874	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	24933874	T	G	24933874	3	3	62	1	0	0	0	0	1	0	0	0	10235	1702	59	5	2531	5	NCOA1	2	24933874	Missense_Mutation	SNP	T	TCGA-AK-3434-01A-02D-1361-10	14009432	24933874	218265499	7	4225											
OTOF	9381	hgsc.bcm.edu	37	2	26687848	26687848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	26687848	T	G	26687848	3	3	62	1	0	0	0	0	1	0	0	0	11310	1667	58	5	1361	5	OTOF	2	26687848	Missense_Mutation	SNP	T	TCGA-AK-3434-01A-02D-1361-10	1753974	26687848	216511525	8	4226											
MAT2A	4144	hgsc.bcm.edu;ucsc.edu	37	2	85768223	85768223	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	85768223	A	C	85768223	3	2	62	1	0	0	0	0	1	0	0	0	9337	101	4	5	115	5	MAT2A	2	85768223	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	59080375	85768223	157431150	9	4227											
SNRNP200	23020	hgsc.bcm.edu;ucsc.edu	37	2	96959208	96959208	+	Silent	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	96959208	A	G	96959208	2	3	62	1	0	0	0	0	0	0	0	1	14865	69	3	3		3	SNRNP200	2	96959208	Silent	SNP	A	TCGA-AK-3434-01A-02D-1361-10	11190985	96959208	146240165	10	4228											
ITGA6	3655	hgsc.bcm.edu;ucsc.edu	37	2	173349850	173349850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	173349850	A	T	173349850	3	4	62	1	0	0	0	0	1	0	0	0	7887	347	12	5	1762	5	ITGA6	2	173349850	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	76390642	173349850	69849523	11	4229											
SLC4A3	6508	hgsc.bcm.edu	37	2	220497112	220497112	+	Silent	SNP	T	T	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	220497112	T	C	220497112	2	2	62	1	0	0	0	0	0	0	0	1	14668	1799	63	3		3	SLC4A3	2	220497112	Silent	SNP	T	TCGA-AK-3434-01A-02D-1361-10	47147262	220497112	22702261	12	4230											
KIAA1486	0	hgsc.bcm.edu	37	2	226273688	226273688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	226273688	A	G	226273688	3	3	62	1	0	0	0	0	1	0	0	0	8244	449	16	3	94	3	KIAA1486	2	226273688	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	5776576	226273688	16925685	13	4231											
MTERFD2	130916	hgsc.bcm.edu;ucsc.edu	37	2	242038907	242038907	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	242038907	A	T	242038907	3	4	62	1	0	0	0	0	1	0	0	0	9927	159	6	5	733	5	MTERFD2	2	242038907	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	15765219	242038907	1160466	14	4232											
NR2C2	7182	hgsc.bcm.edu;ucsc.edu	37	3	15076190	15076190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	15076190	A	C	15076190	3	2	62	1	0	0	0	0	1	0	0	0	10630	159	6	5	1345	5	NR2C2	3	15076190	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10		15076190	182946240	15	4233											
KBTBD5	0	hgsc.bcm.edu	37	3	42727420	42727420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	42727420	T	A	42727420	3	1	62	1	0	0	0	0	1	0	0	0	8003	1838	64	5	312	5	KBTBD5	3	42727420	Missense_Mutation	SNP	T	TCGA-AK-3434-01A-02D-1361-10	27651230	42727420	155295010	16	4234											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52610695	52610695	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	52610695	G	A	52610695	4	1	62	1	0	0	0	0	0	1	0	0	11498	1066	37	1	1383	1	PBRM1	3	52610695	Nonsense_Mutation	SNP	G	TCGA-AK-3434-01A-02D-1361-10	9883275	52610695	145411735	17	4235											
MUC4	4585	hgsc.bcm.edu	37	3	195509374	195509374	+	Missense_Mutation	SNP	T	T	G	rs62282479		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	195509374	T	G	195509374	3	3	62	1	0	0	0	0	1	0	0	0	9985	1464	51	5		5	MUC4	3	195509374	Missense_Mutation	SNP	T	TCGA-AK-3434-01A-02D-1361-10	142898679	195509374	2513056	18	4236											
TBC1D14	57533	hgsc.bcm.edu	37	4	7012491	7012491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	7012491	A	G	7012491	3	3	62	1	0	0	0	0	1	0	0	0	15615	412	15	3	1675	3	TBC1D14	4	7012491	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10		7012491	184141785	19	4237											
TMEM33	55161	hgsc.bcm.edu	37	4	41941346	41941346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	41941346	A	G	41941346	3	3	62	1	0	0	0	0	1	0	0	0	16168	188	7	3	284	3	TMEM33	4	41941346	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	34928855	41941346	149212930	20	4238											
GUF1	60558	hgsc.bcm.edu	37	4	44700675	44700675	+	Silent	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	44700675	C	T	44700675	2	4	62	1	0	0	0	0	0	0	0	1	6906	912	32	2		2	GUF1	4	44700675	Silent	SNP	C	TCGA-AK-3434-01A-02D-1361-10	2759329	44700675	146453601	21	4239											
NUDT9	53343	hgsc.bcm.edu;ucsc.edu	37	4	88359433	88359433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	88359433	A	C	88359433	3	2	62	1	0	0	0	0	1	0	0	0	10753	72	3	5	362	5	NUDT9	4	88359433	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	43658758	88359433	102794843	22	4240											
TRIM2	23321	hgsc.bcm.edu;ucsc.edu	37	4	154197264	154197264	+	Silent	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	154197264	C	T	154197264	2	4	62	1	0	0	0	0	0	0	0	1	16506	747	26	2		2	TRIM2	4	154197264	Silent	SNP	C	TCGA-AK-3434-01A-02D-1361-10	65837831	154197264	36957012	23	4241											
KIF2A	3796	hgsc.bcm.edu	37	5	61659522	61659522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	61659522	A	C	61659522	3	2	62	1	0	0	0	0	1	0	0	0	8304	260	9	5	1317	5	KIF2A	5	61659522	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10		61659522	119255738	24	4242											
MAN2A1	4124	hgsc.bcm.edu;ucsc.edu	37	5	109049281	109049281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	109049281	A	G	109049281	3	3	62	1	0	0	0	0	1	0	0	0	9221	362	13	3	202	3	MAN2A1	5	109049281	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	47389759	109049281	71865979	25	4243											
NUDCD2	134492	hgsc.bcm.edu;ucsc.edu	37	5	162881024	162881024	+	Silent	SNP	G	G	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	162881024	G	T	162881024	2	4	62	1	0	0	0	0	0	0	0	1	10730	932	33	4		4	NUDCD2	5	162881024	Silent	SNP	G	TCGA-AK-3434-01A-02D-1361-10	53831743	162881024	18034236	26	4244											
ADAMTS2	9509	hgsc.bcm.edu	37	5	178559878	178559878	+	Silent	SNP	G	G	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	178559878	G	A	178559878	2	1	62	1	0	0	0	0	0	0	0	1	265	1048	37	1		1	ADAMTS2	5	178559878	Silent	SNP	G	TCGA-AK-3434-01A-02D-1361-10	15678854	178559878	2355382	27	4245											
RASGEF1C	255426	hgsc.bcm.edu	37	5	179555487	179555487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	179555487	C	T	179555487	3	4	62	1	0	0	0	0	1	0	0	0	13084	797	28	2	878	2	RASGEF1C	5	179555487	Missense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10	995609	179555487	1359773	28	4246											
RPP21	79897	hgsc.bcm.edu	37	6	30314294	30314294	+	Silent	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	30314294	C	T	30314294	2	4	62	1	0	0	0	0	0	0	0	1	13623	900	32	2		2	RPP21	6	30314294	Silent	SNP	C	TCGA-AK-3434-01A-02D-1361-10		30314294	140800773	29	4247											
TDRD6	221400	hgsc.bcm.edu	37	6	46659688	46659688	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	46659688	A	C	46659688	3	2	62	1	0	0	0	0	1	0	0	0	15746	391	14	5	3825	5	TDRD6	6	46659688	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	16345394	46659688	124455379	30	4248											
SFRS18	0	hgsc.bcm.edu	37	6	99860572	99860572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	99860572	T	A	99860572	3	1	62	1	0	0	0	0	1	0	0	0	14187	1838	64	5	2321	5	SFRS18	6	99860572	Missense_Mutation	SNP	T	TCGA-AK-3434-01A-02D-1361-10	53200884	99860572	71254495	31	4249											
SMPD2	6610	hgsc.bcm.edu	37	6	109764751	109764751	+	Silent	SNP	G	G	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	109764751	G	T	109764751	2	4	62	1	0	0	0	0	0	0	0	1	14818	1306	46	4		4	SMPD2	6	109764751	Silent	SNP	G	TCGA-AK-3434-01A-02D-1361-10	9904179	109764751	61350316	32	4250											
LAMA2	3908	hgsc.bcm.edu	37	6	129796548	129796548	+	Splice_Site	SNP	T	T	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	129796548	T	C	129796548	5	2	62	1	0	0	0	0	0	0	1	0	8613	1652	57	3	7663	3	LAMA2	6	129796548	Splice_Site	SNP	T	TCGA-AK-3434-01A-02D-1361-10	20031797	129796548	41318519	33	4251											
ECT2L	345930	hgsc.bcm.edu;ucsc.edu	37	6	139222225	139222225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	139222225	G	A	139222225	3	1	62	1	0	0	0	0	1	0	0	0	4904	1116	39	1	2629	1	ECT2L	6	139222225	Missense_Mutation	SNP	G	TCGA-AK-3434-01A-02D-1361-10	9425677	139222225	31892842	34	4252											
MLLT4	4301	hgsc.bcm.edu	37	6	168271097	168271097	+	Silent	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	168271097	A	G	168271097	2	3	62	1	0	0	0	0	0	0	0	1	9636	407	15	3		3	MLLT4	6	168271097	Silent	SNP	A	TCGA-AK-3434-01A-02D-1361-10	29048872	168271097	2843970	35	4253											
MCPH1	79648	hgsc.bcm.edu	37	8	6312675	6312675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	6312675	A	G	6312675	3	3	62	1	0	0	0	0	1	0	0	0	9405	412	15	3	1879	3	MCPH1	8	6312675	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10		6312675	140051347	36	4254											
ZHX2	22882	hgsc.bcm.edu	37	8	123964182	123964182	+	Silent	SNP	T	T	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	123964182	T	A	123964182	2	1	62	1	0	0	0	0	0	0	0	1	17688	1742	61	5		5	ZHX2	8	123964182	Silent	SNP	T	TCGA-AK-3434-01A-02D-1361-10	117651507	123964182	22399840	37	4255											
PCDH15	65217	hgsc.bcm.edu	37	10	55849761	55849761	+	Silent	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	55849761	A	G	55849761	2	3	62	1	0	0	0	0	0	0	0	1	11518	1	1	3		3	PCDH15	10	55849761	Silent	SNP	A	TCGA-AK-3434-01A-02D-1361-10		55849761	79684986	38	4256											
RBP4	5950	hgsc.bcm.edu	37	10	95353602	95353602	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	95353602	C	G	95353602	3	3	62	1	0	0	0	0	1	0	0	0	13171	564	20	4	67	4	RBP4	10	95353602	Missense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10	39503841	95353602	40181145	39	4257											
MUC2	4583	hgsc.bcm.edu	37	11	1092238	1092238	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	1092238	C	T	1092238	4	4	62	1	0	0	0	0	0	1	0	0	9982	595	21	2	4175	2	MUC2	11	1092238	Nonsense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10		1092238	133914278	40	4258											
TYR	7299	hgsc.bcm.edu;ucsc.edu	37	11	88911155	88911155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	88911155	A	T	88911155	3	4	62	1	0	0	0	0	1	0	0	0	16825	304	11	5	36	5	TYR	11	88911155	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	87818917	88911155	46095361	41	4259											
ALKBH8	91801	hgsc.bcm.edu;ucsc.edu	37	11	107375723	107375723	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	107375723	G	C	107375723	3	2	62	1	0	0	0	0	1	0	0	0	533	1020	36	4	342	4	ALKBH8	11	107375723	Missense_Mutation	SNP	G	TCGA-AK-3434-01A-02D-1361-10	18464568	107375723	27630793	42	4260											
CRTAM	56253	hgsc.bcm.edu;ucsc.edu	37	11	122733210	122733210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	122733210	A	G	122733210	3	3	62	1	0	0	0	0	1	0	0	0	3899	14	1	3	713	3	CRTAM	11	122733210	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	15357487	122733210	12273306	43	4261											
FAIM2	23017	hgsc.bcm.edu	37	12	50284501	50284501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	50284501	G	T	50284501	3	4	62	1	0	0	0	0	1	0	0	0	5380	1319	46	4	484	4	FAIM2	12	50284501	Missense_Mutation	SNP	G	TCGA-AK-3434-01A-02D-1361-10		50284501	83567394	44	4262											
SLC4A8	9498	hgsc.bcm.edu	37	12	51851247	51851247	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	51851247	C	G	51851247	3	3	62	1	0	0	0	0	1	0	0	0	14672	477	17	4	709	4	SLC4A8	12	51851247	Missense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10	1566746	51851247	82000648	45	4263											
STAT2	6773	hgsc.bcm.edu	37	12	56744656	56744656	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	56744656	G	A	56744656	4	1	62	1	0	0	0	0	0	1	0	0	15277	1357	47	2	1560	2	STAT2	12	56744656	Nonsense_Mutation	SNP	G	TCGA-AK-3434-01A-02D-1361-10	4893409	56744656	77107239	46	4264											
GOLGA3	2802	hgsc.bcm.edu	37	12	133393164	133393164	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	133393164	G	C	133393164	3	2	62	1	0	0	0	0	1	0	0	0	6561	942	33	4	4354	4	GOLGA3	12	133393164	Missense_Mutation	SNP	G	TCGA-AK-3434-01A-02D-1361-10	76648508	133393164	458731	47	4265											
CCNA1	8900	hgsc.bcm.edu	37	13	37015358	37015358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	37015358	A	G	37015358	3	3	62	1	0	0	0	0	1	0	0	0	2911	72	3	3	1228	3	CCNA1	13	37015358	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10		37015358	78154520	48	4266											
SYNE2	23224	hgsc.bcm.edu	37	14	64554560	64554560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	64554560	C	A	64554560	3	1	62	1	0	0	0	0	1	0	0	0	15458	827	29	4	11882	4	SYNE2	14	64554560	Missense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10		64554560	42794980	49	4267											
CHRNA7	1139	hgsc.bcm.edu	37	15	32449875	32449876	+	Frame_Shift_Del	DEL	TG	TG	-	rs67158670	bycluster;byfrequency	TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	-	32449876	TG	-	32449875	7	5	62	1	0	1	0	1	0	0	0	0	3390	1580	55	0	519	0	CHRNA7	15	32449875	Frame_Shift_Del	DEL	TG	TCGA-AK-3434-01A-02D-1361-10		32449875	70081517	50	4268											
FAM82A2	0	hgsc.bcm.edu	37	15	41037298	41037298	+	Silent	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	41037298	C	T	41037298	2	4	62	1	0	0	0	0	0	0	0	1	5638	680	24	2		2	FAM82A2	15	41037298	Silent	SNP	C	TCGA-AK-3434-01A-02D-1361-10	8587423	41037298	61494094	51	4269											
LCMT2	9836	hgsc.bcm.edu;ucsc.edu	37	15	43621583	43621583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	43621583	C	T	43621583	3	4	62	1	0	0	0	0	1	0	0	0	8686	536	19	1	959	1	LCMT2	15	43621583	Missense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10	2584285	43621583	58909809	52	4270											
ZKSCAN2	342357	hgsc.bcm.edu;ucsc.edu	37	16	25264266	25264266	+	Splice_Site	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	25264266	C	T	25264266	5	4	62	1	0	0	0	0	0	0	1	0	17699	521	18	2	2244	2	ZKSCAN2	16	25264266	Splice_Site	SNP	C	TCGA-AK-3434-01A-02D-1361-10		25264266	65090487	53	4271											
CNTNAP4	85445	hgsc.bcm.edu;ucsc.edu	37	16	76482716	76482716	+	Missense_Mutation	SNP	C	C	A	rs139295295	by1000genomes;alternate_allele	TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	76482716	C	A	76482716	3	1	62	1	0	0	0	0	1	0	0	0	3651	738	26	4	830	4	CNTNAP4	16	76482716	Missense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10	51218450	76482716	13872037	54	4272											
C16orf55	124045	hgsc.bcm.edu	37	16	89735835	89735835	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	89735835	A	C	89735835	3	2	62	1	0	0	0	0	1	0	0	0	1822	275	10	5	360	5	C16orf55	16	89735835	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	13253119	89735835	618918	55	4273											
VTN	7448	hgsc.bcm.edu;ucsc.edu	37	17	26697201	26697201	+	Silent	SNP	G	G	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	26697201	G	T	26697201	2	4	62	1	0	0	0	0	0	0	0	1	17249	1277	45	4		4	VTN	17	26697201	Silent	SNP	G	TCGA-AK-3434-01A-02D-1361-10		26697201	54498009	56	4274											
KCNH4	23415	hgsc.bcm.edu	37	17	40327694	40327694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	40327694	G	T	40327694	3	4	62	1	0	0	0	0	1	0	0	0	8041	1000	35	4	2207	4	KCNH4	17	40327694	Missense_Mutation	SNP	G	TCGA-AK-3434-01A-02D-1361-10	13630493	40327694	40867516	57	4275											
C1QL1	10882	hgsc.bcm.edu	37	17	43037729	43037729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	43037729	C	T	43037729	3	4	62	1	0	0	0	0	1	0	0	0	1960	739	26	2	176	2	C1QL1	17	43037729	Missense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10	2710035	43037729	38157481	58	4276											
ABCA8	10351	hgsc.bcm.edu	37	17	66933090	66933090	+	Splice_Site	SNP	A	A	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	66933090	A	G	66933090	5	3	62	1	0	0	0	0	0	0	1	0	38	405	14	3	4417	3	ABCA8	17	66933090	Splice_Site	SNP	A	TCGA-AK-3434-01A-02D-1361-10	23895361	66933090	14262120	59	4277											
GRIN2C	2905	hgsc.bcm.edu	37	17	72842988	72842988	+	Silent	SNP	G	G	A	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	72842988	G	A	72842988	2	1	62	1	0	0	0	0	0	0	0	1	6788	1368	48	2		2	GRIN2C	17	72842988	Silent	SNP	G	TCGA-AK-3434-01A-02D-1361-10	5909898	72842988	8352222	60	4278											
MOCOS	55034	hgsc.bcm.edu	37	18	33848514	33848514	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	33848514	C	G	33848514	3	3	62	1	0	0	0	0	1	0	0	0	9696	680	24	4	2591	4	MOCOS	18	33848514	Missense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10		33848514	44228734	61	4279											
KLK10	5655	hgsc.bcm.edu	37	19	51519366	51519366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	51519366	C	T	51519366	3	4	62	1	0	0	0	0	1	0	0	0	8405	632	22	2	526	2	KLK10	19	51519366	Missense_Mutation	SNP	C	TCGA-AK-3434-01A-02D-1361-10		51519366	7609617	62	4280											
SYNJ1	8867	hgsc.bcm.edu;ucsc.edu	37	21	34053894	34053894	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	34053894	T	G	34053894	3	3	62	1	0	0	0	0	1	0	0	0	15464	1812	63	5	3578	5	SYNJ1	21	34053894	Missense_Mutation	SNP	T	TCGA-AK-3434-01A-02D-1361-10		34053894	14076001	63	4281											
SGSM3	27352	hgsc.bcm.edu;ucsc.edu	37	22	40803848	40803848	+	Splice_Site	SNP	G	G	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	40803848	G	C	40803848	5	2	62	1	0	0	0	0	0	0	1	0	14237	1275	44	4	1630	4	SGSM3	22	40803848	Splice_Site	SNP	G	TCGA-AK-3434-01A-02D-1361-10		40803848	10500718	64	4282											
SREBF2	6721	hgsc.bcm.edu	37	22	42269953	42269953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	42269953	A	T	42269953	3	4	62	1	0	0	0	0	1	0	0	0	15154	14	1	5	1037	5	SREBF2	22	42269953	Missense_Mutation	SNP	A	TCGA-AK-3434-01A-02D-1361-10	1466105	42269953	9034613	65	4283											
TCF20	6942	hgsc.bcm.edu;ucsc.edu	37	22	42609902	42609902	+	Silent	SNP	G	G	T	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	T	42609902	G	T	42609902	2	4	62	1	0	0	0	0	0	0	0	1	15702	1161	41	4		4	TCF20	22	42609902	Silent	SNP	G	TCGA-AK-3434-01A-02D-1361-10	339949	42609902	8694664	66	4284											
RPGR	6103	hgsc.bcm.edu;ucsc.edu	37	X	38180284	38180284	+	Silent	SNP	T	T	G	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	G	38180284	T	G	38180284	2	3	62	1	0	0	0	0	0	0	0	1	13561	1799	63	5		5	RPGR	23	38180284	Silent	SNP	T	TCGA-AK-3434-01A-02D-1361-10		38180284	117090276	67	4285											
ALAS2	212	hgsc.bcm.edu	37	X	55051156	55051156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	C	55051156	T	C	55051156	3	2	62	1	0	0	0	0	1	0	0	0	485	1609	56	3	1500	3	ALAS2	23	55051156	Missense_Mutation	SNP	T	TCGA-AK-3434-01A-02D-1361-10	16870872	55051156	100219404	68	4286											
CXorf40B	541578	hgsc.bcm.edu;ucsc.edu	37	X	149100904	149100904	+	Missense_Mutation	SNP	G	G	A	rs151337313	byfrequency	TCGA-AK-3434-01A-02D-1361-10	TCGA-AK-3434-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d2b9053e-2461-4bd1-b205-ae2c7b9c5289	d2ac612a-347f-4541-b95d-973e85021530	A	149100904	G	A	149100904	3	1	62	1	0	0	0	0	1	0	0	0	4111	1319	46	2	145	2	CXorf40B	23	149100904	Missense_Mutation	SNP	G	TCGA-AK-3434-01A-02D-1361-10	94049748	149100904	6169656	69	4287											
ATAD3C	219293	hgsc.bcm.edu	37	1	1391612	1391612	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	-	1391612	C	-	1391612	7	5	63	1	0	1	0	1	0	0	0	0	1075	739	26	0	598	0	ATAD3C	1	1391612	Frame_Shift_Del	DEL	C	TCGA-AK-3436-01A-02D-1386-10		1391612	247859009	1	4288											
RCC2	55920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	17739593	17739593	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	17739593	C	T	17739593	4	4	63	1	0	0	0	0	0	1	0	0	13187	595	21	2	295	2	RCC2	1	17739593	Nonsense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10	16347981	17739593	231511028	2	4289											
INADL	10207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62288675	62288675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	G	62288675	A	G	62288675	3	3	63	1	0	0	0	0	1	0	0	0	7738	217	8	3	1796	3	INADL	1	62288675	Missense_Mutation	SNP	A	TCGA-AK-3436-01A-02D-1386-10	44549082	62288675	186961946	3	4290											
ELTD1	64123	broad.mit.edu;ucsc.edu	37	1	79387470	79387470	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	C	79387470	C	C	79387470	3	2	63	1	0	0	0	0	1	0	0	0	5086	289	10	5	1015	5	ELTD1	1	79387470	Missense_Mutation	SNP	A	TCGA-AK-3436-01A-02D-1386-10	17098795	79387470	169863151	4	4291											
PGLYRP3	114771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153271694	153271694	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	153271694	G	A	153271694	4	1	63	1	0	0	0	0	0	1	0	0	11802	1357	47	2	291	2	PGLYRP3	1	153271694	Nonsense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	73884224	153271694	95978927	5	4292											
ASH1L	55870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155449218	155449218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	155449218	G	A	155449218	3	1	63	1	0	0	0	0	1	0	0	0	1041	1029	36	2	5555	2	ASH1L	1	155449218	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	2177524	155449218	93801403	6	4293											
NRXN1	9378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	50149352	50149352	+	Silent	SNP	T	T	A	rs55923848	bycluster;byfrequency;alternate_allele	TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	50149352	T	A	50149352	2	1	63	1	0	0	0	0	0	0	0	1	10672	1567	55	5		5	NRXN1	2	50149352	Silent	SNP	T	TCGA-AK-3436-01A-02D-1386-10		50149352	193050021	7	4294											
SNRNP27	11017	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	70122252	70122252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	70122252	C	T	70122252	3	4	63	1	0	0	0	0	1	0	0	0	14867	643	23	1	67	1	SNRNP27	2	70122252	Missense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10	19972900	70122252	173077121	8	4295											
STAMBP	10617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	74087228	74087228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	C	74087228	T	C	74087228	3	2	63	1	0	0	0	0	1	0	0	0	15262	1580	55	3	1198	3	STAMBP	2	74087228	Missense_Mutation	SNP	T	TCGA-AK-3436-01A-02D-1386-10	3964976	74087228	169112145	9	4296											
SLC9A2	6549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	103281704	103281704	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	G	103281704	C	G	103281704	3	3	63	1	0	0	0	0	1	0	0	0	14725	565	20	4	909	4	SLC9A2	2	103281704	Missense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10	29194476	103281704	139917669	10	4297											
UBR3	130507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170885902	170885902	+	Silent	SNP	T	T	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	170885902	T	A	170885902	2	1	63	1	0	0	0	0	0	0	0	1	16915	1800	63	5		5	UBR3	2	170885902	Silent	SNP	T	TCGA-AK-3436-01A-02D-1386-10	67604198	170885902	72313471	11	4298											
PDE11A	50940	hgsc.bcm.edu	37	2	178936994	178936994	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	-	178936994	A	-	178936994	7	5	63	1	0	1	0	1	0	0	0	0	11638	378	14	0	2710	0	PDE11A	2	178936994	Frame_Shift_Del	DEL	A	TCGA-AK-3436-01A-02D-1386-10	8051092	178936994	64262379	12	4299											
AOX1	316	broad.mit.edu;ucsc.edu	37	2	201533423	201533423	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	201533423	T	T	201533423	3	4	63	1	0	0	0	0	1	0	0	0	729	1261	44	4	3825	4	AOX1	2	201533423	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	22596429	201533423	41665950	13	4300											
IDH1	3417	broad.mit.edu;ucsc.edu	37	2	209108295	209108295	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	G	209108295	G	G	209108295	3	3	63	1	0	0	0	0	1	0	0	0	7501	1812	63	5	710	5	IDH1	2	209108295	Missense_Mutation	SNP	T	TCGA-AK-3436-01A-02D-1386-10	7574872	209108295	34091078	14	4301											
C2orf67	0	broad.mit.edu;ucsc.edu	37	2	210889826	210889826	+	Splice_Site	SNP	G	A	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	210889826	A	A	210889826	5	1	63	1	0	0	0	0	0	0	1	0	2188	1333	46	2	409	2	C2orf67	2	210889826	Splice_Site	SNP	G	TCGA-AK-3436-01A-02D-1386-10	1781531	210889826	32309547	15	4302											
ALPPL2	251	hgsc.bcm.edu	37	2	233271669	233271669	+	Missense_Mutation	SNP	C	C	T	rs41415150		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	233271669	C	T	233271669	3	4	63	1	0	0	0	0	1	0	0	0	549	594	21	2	67	2	ALPPL2	2	233271669	Missense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10	22381843	233271669	9927704	16	4303											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52621464	52621464	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	52621464	G	A	52621464	4	1	63	1	0	0	0	0	0	1	0	0	11498	1153	40	1	1920	1	PBRM1	3	52621464	Nonsense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10		52621464	145400966	17	4304											
CLRN1	7401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	150659493	150659493	+	Silent	SNP	G	G	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	150659493	G	T	150659493	2	4	63	1	0	0	0	0	0	0	0	1	3559	929	33	4		4	CLRN1	3	150659493	Silent	SNP	G	TCGA-AK-3436-01A-02D-1386-10	98038029	150659493	47362937	18	4305											
TRIM59	286827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	160156326	160156326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	C	160156326	G	C	160156326	3	2	63	1	0	0	0	0	1	0	0	0	16544	1299	45	4	569	4	TRIM59	3	160156326	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	9496833	160156326	37866104	19	4306											
MUC4	4585	broad.mit.edu	37	3	195510192	195510192	+	Silent	SNP	A	C	C	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	C	195510192	C	C	195510192	2	2	63	1	0	0	0	0	0	0	0	1	9985	233	9	5		5	MUC4	3	195510192	Silent	SNP	A	TCGA-AK-3436-01A-02D-1386-10	35353866	195510192	2512238	20	4307	49	2									
MUC4	4585	broad.mit.edu	37	3	195510194	195510194	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	C	195510194	C	C	195510194	3	2	63	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195510194	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	2	195510194	2512236	21	4308	49	2									
UBE2D3	7323	broad.mit.edu;ucsc.edu	37	4	103723780	103723780	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	103723780	A	A	103723780	4	1	63	1	0	0	0	0	0	1	0	0	16862	1299	45	2	376	2	UBE2D3	4	103723780	Nonsense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10		103723780	87430496	22	4309											
PAPSS1	9061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	108608293	108608293	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	C	108608293	A	C	108608293	4	2	63	1	0	0	0	0	0	1	0	0	11441	372	13	5	1458	5	PAPSS1	4	108608293	Nonsense_Mutation	SNP	A	TCGA-AK-3436-01A-02D-1386-10	4884513	108608293	82545983	23	4310											
TMEM154	201799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	153564272	153564272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	153564272	A	T	153564272	3	4	63	1	0	0	0	0	1	0	0	0	16083	72	3	5	117	5	TMEM154	4	153564272	Missense_Mutation	SNP	A	TCGA-AK-3436-01A-02D-1386-10	44955979	153564272	37590004	24	4311											
FNIP2	57600	broad.mit.edu;ucsc.edu	37	4	159789371	159789371	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	159789371	A	A	159789371	3	1	63	1	0	0	0	0	1	0	0	0	5983	913	32	4	1633	4	FNIP2	4	159789371	Missense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10	6225099	159789371	31364905	25	4312											
CDH12	1010	broad.mit.edu;ucsc.edu	37	5	21760751	21760751	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	21760751	T	T	21760751	3	4	63	1	0	0	0	0	1	0	0	0	3100	942	33	4	847	4	CDH12	5	21760751	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10		21760751	159154509	26	4313											
URGCP	55665	broad.mit.edu;hgsc.bcm.edu	37	7	43918173	43918173	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	G	43918173	C	G	43918173	3	3	63	1	0	0	0	0	1	0	0	0	17038	855	30	4	1910	4	URGCP	7	43918173	Missense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10		43918173	115220490	27	4314											
PHTF2	57157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	77469587	77469587	+	Silent	SNP	C	C	G	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	G	77469587	C	G	77469587	2	3	63	1	0	0	0	0	0	0	0	1	11870	813	29	4		4	PHTF2	7	77469587	Silent	SNP	C	TCGA-AK-3436-01A-02D-1386-10	33551414	77469587	81669076	28	4315											
ANGPT1	284	broad.mit.edu;hgsc.bcm.edu	37	8	108348486	108348486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	108348486	G	T	108348486	3	4	63	1	0	0	0	0	1	0	0	0	610	1029	36	4	1057	4	ANGPT1	8	108348486	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10		108348486	38015536	29	4316											
NET1	10276	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	5494480	5494480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	5494480	C	T	5494480	3	4	63	1	0	0	0	0	1	0	0	0	10345	527	19	1	638	1	NET1	10	5494480	Missense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10		5494480	130040267	30	4317											
CUEDC2	79004	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	104184284	104184284	+	Silent	SNP	T	T	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	104184284	T	A	104184284	2	1	63	1	0	0	0	0	0	0	0	1	4055	1567	55	5		5	CUEDC2	10	104184284	Silent	SNP	T	TCGA-AK-3436-01A-02D-1386-10	98689804	104184284	31350463	31	4318											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92088147	92088147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	C	92088147	T	C	92088147	3	2	63	1	0	0	0	0	1	0	0	0	5698	1812	63	3	2871	3	FAT3	11	92088147	Missense_Mutation	SNP	T	TCGA-AK-3436-01A-02D-1386-10		92088147	42918369	32	4319											
KRT6B	3854	broad.mit.edu;hgsc.bcm.edu	37	12	52842629	52842629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	52842629	C	A	52842629	3	1	63	1	0	0	0	0	1	0	0	0	8488	796	28	4	510	4	KRT6B	12	52842629	Missense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10		52842629	81009266	33	4320											
LRP1	4035	broad.mit.edu;hgsc.bcm.edu	37	12	57577934	57577934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	57577934	G	A	57577934	3	1	63	1	0	0	0	0	1	0	0	0	8958	1087	38	1	6142	1	LRP1	12	57577934	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	4735305	57577934	76273961	34	4321											
NAV3	89795	broad.mit.edu;ucsc.edu	37	12	78392214	78392214	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	78392214	A	A	78392214	3	1	63	1	0	0	0	0	1	0	0	0	10192	1290	45	2	864	2	NAV3	12	78392214	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	20814280	78392214	55459681	35	4322											
ATXN2	6311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	111923629	111923629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	111923629	G	A	111923629	3	1	63	1	0	0	0	0	1	0	0	0	1211	1319	46	2	1152	2	ATXN2	12	111923629	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	33531415	111923629	21928266	36	4323											
SPPL3	121665	broad.mit.edu;ucsc.edu	37	12	121206288	121206288	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	121206288	T	T	121206288	3	4	63	1	0	0	0	0	1	0	0	0	15102	101	4	5	557	5	SPPL3	12	121206288	Missense_Mutation	SNP	A	TCGA-AK-3436-01A-02D-1386-10	9282659	121206288	12645607	37	4324											
RSRC2	65117	broad.mit.edu;ucsc.edu	37	12	123003401	123003401	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	123003401	T	T	123003401	3	4	63	1	0	0	0	0	1	0	0	0	13728	942	33	4	949	4	RSRC2	12	123003401	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	1797113	123003401	10848494	38	4325											
FREM2	341640	broad.mit.edu;ucsc.edu	37	13	39451341	39451341	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	G	39451341	G	G	39451341	3	3	63	1	0	0	0	0	1	0	0	0	6052	217	8	3	8714	3	FREM2	13	39451341	Missense_Mutation	SNP	A	TCGA-AK-3436-01A-02D-1386-10		39451341	75718537	39	4326											
STK24	8428	hgsc.bcm.edu;ucsc.edu	37	13	99118770	99118771	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	99118771	-	A	99118770	7	5	63	1	0	1	1	0	0	0	0	0	15305	681	24	0	676	0	STK24	13	99118770	Frame_Shift_Ins	INS	-	TCGA-AK-3436-01A-02D-1386-10	59667429	99118770	16051108	40	4327											
TCF12	6938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	57458628	57458628	+	Silent	SNP	C	C	A	rs147522860	alternate_allele	TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	57458628	C	A	57458628	2	1	63	1	0	0	0	0	0	0	0	1	15699	610	22	4		4	TCF12	15	57458628	Silent	SNP	C	TCGA-AK-3436-01A-02D-1386-10		57458628	45072764	41	4328											
FAH	2184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	80452758	80452758	+	Silent	SNP	C	C	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	80452758	C	T	80452758	2	4	63	1	0	0	0	0	0	0	0	1	5375	825	29	2		2	FAH	15	80452758	Silent	SNP	C	TCGA-AK-3436-01A-02D-1386-10	22994130	80452758	22078634	42	4329											
MSLNL	401827	hgsc.bcm.edu	37	16	830807	830829	+	Frame_Shift_Del	DEL	AGCTGTGTGCACGGGTAGGTGAA	AGCTGTGTGCACGGGTAGGTGAA	-	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	AGCTGTGTGCACGGGTAGGTGAA	AGCTGTGTGCACGGGTAGGTGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	-	830829	AGCTGTGTGCACGGGTAGGTGAA	-	830807	7	5	63	1	0	1	0	1	0	0	0	0	9889	188	7	0	3023	0	MSLNL	16	830807	Frame_Shift_Del	DEL	AGCTGTGTGCACGGGTAGGTGAA	TCGA-AK-3436-01A-02D-1386-10		830807	89523946	43	4330											
MYH1	4619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10408350	10408350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	10408350	C	T	10408350	3	4	63	1	0	0	0	0	1	0	0	0	10036	536	19	1	3427	1	MYH1	17	10408350	Missense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10		10408350	70786860	44	4331											
MYH1	4619	broad.mit.edu;hgsc.bcm.edu	37	17	10409332	10409332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	C	10409332	G	C	10409332	3	2	63	1	0	0	0	0	1	0	0	0	10036	1174	41	4	3858	4	MYH1	17	10409332	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	982	10409332	70785878	45	4332											
RPL19	6143	hgsc.bcm.edu	37	17	37360844	37360844	+	Silent	SNP	G	G	A	rs72823350	bycluster;by1000genomes	TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	37360844	G	A	37360844	2	1	63	1	0	0	0	0	0	0	0	1	13579	991	35	2		2	RPL19	17	37360844	Silent	SNP	G	TCGA-AK-3436-01A-02D-1386-10	26951512	37360844	43834366	46	4333											
KRTAP9-4	85280	hgsc.bcm.edu	37	17	39406343	39406343	+	Missense_Mutation	SNP	A	A	G	rs76766237		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	G	39406343	A	G	39406343	3	3	63	1	0	0	0	0	1	0	0	0	8582	43	2	3	373	3	KRTAP9-4	17	39406343	Missense_Mutation	SNP	A	TCGA-AK-3436-01A-02D-1386-10	2045499	39406343	41788867	47	4334											
ZNF519	162655	hgsc.bcm.edu	37	18	14105166	14105249	+	In_Frame_Del	DEL	TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT	TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT	-	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT	TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	-	14105249	TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT	-	14105166	7	5	63	1	0	1	0	1	0	0	0	0	17976	1609	56	0	253	0	ZNF519	18	14105166	In_Frame_Del	DEL	TTCTCTCCAGTATGGATTCTTTGATGTCGAGTAAGGTGTGAGCCCCTGTTAAAGGCTTTGCCACATTCTTTACATTTGAAGTGT	TCGA-AK-3436-01A-02D-1386-10		14105166	63972082	48	4335											
OR7D4	125958	broad.mit.edu;hgsc.bcm.edu	37	19	9325393	9325393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	9325393	C	T	9325393	3	4	63	1	0	0	0	0	1	0	0	0	11227	623	22	2	821	2	OR7D4	19	9325393	Missense_Mutation	SNP	C	TCGA-AK-3436-01A-02D-1386-10		9325393	49803590	49	4336											
SIGLEC5	8778	hgsc.bcm.edu	37	19	52131256	52131257	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	G	52131257	-	G	52131256	7	5	63	1	0	1	1	0	0	0	0	0	14324	175	7	0	847	0	SIGLEC5	19	52131256	Frame_Shift_Ins	INS	-	TCGA-AK-3436-01A-02D-1386-10	42805863	52131256	6997727	50	4337											
C19orf51	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55670934	55670934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	55670934	G	T	55670934	3	4	63	1	0	0	0	0	1	0	0	0	1935	1319	46	4	428	4	C19orf51	19	55670934	Missense_Mutation	SNP	G	TCGA-AK-3436-01A-02D-1386-10	3539678	55670934	3458049	51	4338											
SYT5	6861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55686305	55686305	+	Silent	SNP	G	G	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	55686305	G	A	55686305	2	1	63	1	0	0	0	0	0	0	0	1	15489	1103	39	1		1	SYT5	19	55686305	Silent	SNP	G	TCGA-AK-3436-01A-02D-1386-10	15371	55686305	3442678	52	4339											
B4GALT5	9334	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	48273175	48273175	+	Silent	SNP	G	G	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	48273175	G	A	48273175	2	1	63	1	0	0	0	0	0	0	0	1	1274	1048	37	1		1	B4GALT5	20	48273175	Silent	SNP	G	TCGA-AK-3436-01A-02D-1386-10		48273175	14752345	53	4340											
RBM11	54033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	15592035	15592035	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	T	15592035	A	T	15592035	3	4	63	1	0	0	0	0	1	0	0	0	13125	188	7	5	254	5	RBM11	21	15592035	Missense_Mutation	SNP	A	TCGA-AK-3436-01A-02D-1386-10		15592035	32537860	54	4341											
CELSR1	9620	hgsc.bcm.edu	37	22	46759085	46759111	+	Frame_Shift_Del	DEL	CTGATGGTTCAAATTGAAGTTTCATTA	CTGATGGTTCAAATTGAAGTTTCATTA	-	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	CTGATGGTTCAAATTGAAGTTTCATTA	CTGATGGTTCAAATTGAAGTTTCATTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	-	46759111	CTGATGGTTCAAATTGAAGTTTCATTA	-	46759085	7	5	63	1	0	1	0	1	0	0	0	0	3223	695	24	0	13	0	CELSR1	22	46759085	Frame_Shift_Del	DEL	CTGATGGTTCAAATTGAAGTTTCATTA	TCGA-AK-3436-01A-02D-1386-10		46759085	4545481	55	4342											
PPP1R3F	89801	broad.mit.edu;hgsc.bcm.edu	37	X	49143162	49143162	+	Silent	SNP	G	G	A	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	A	49143162	G	A	49143162	2	1	63	1	0	0	0	0	0	0	0	1	12385	1161	41	2		2	PPP1R3F	23	49143162	Silent	SNP	G	TCGA-AK-3436-01A-02D-1386-10		49143162	106127398	56	4343											
XIAP	331	broad.mit.edu	37	X	123025168	123025168	+	Splice_Site	SNP	T	C	C	novel		TCGA-AK-3436-01A-02D-1386-10	TCGA-AK-3436-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	714cd118-7f2b-47a5-83f6-41b20674ad03	593c9ff9-5933-4eed-9477-3c0fa7c9dc95	C	123025168	C	C	123025168	5	2	63	1	0	0	0	0	0	0	1	0	17440	1652	57	3	1068	3	XIAP	23	123025168	Splice_Site	SNP	T	TCGA-AK-3436-01A-02D-1386-10	73882006	123025168	32245392	57	4344											
ZMYM6	9204	broad.mit.edu	37	1	35476132	35476132	+	Missense_Mutation	SNP	C	C	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	35476132	C	A	35476132	3	1	64	1	0	0	0	0	1	0	0	0	17716	739	26	4	2597	4	ZMYM6	1	35476132	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08		35476132	213774489	1	4345											
PRKACB	5567	broad.mit.edu	37	1	84700917	84700917	+	Missense_Mutation	SNP	G	G	C			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	C	84700917	G	C	84700917	3	2	64	1	0	0	0	0	1	0	0	0	12508	1290	45	4	1227	4	PRKACB	1	84700917	Missense_Mutation	SNP	G	TCGA-AK-3440-01A-01D-0966-08	49224785	84700917	164549704	2	4346											
XPC	7508	broad.mit.edu	37	3	14220061	14220061	+	Missense_Mutation	SNP	C	C	G			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	G	14220061	C	G	14220061	3	3	64	1	0	0	0	0	1	0	0	0	17453	652	23	4	1827	4	XPC	3	14220061	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08		14220061	183802369	3	4347											
ANXA3	306	broad.mit.edu	37	4	79522703	79522703	+	Missense_Mutation	SNP	G	G	T			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	T	79522703	G	T	79522703	3	4	64	1	0	0	0	0	1	0	0	0	719	942	33	4	808	4	ANXA3	4	79522703	Missense_Mutation	SNP	G	TCGA-AK-3440-01A-01D-0966-08		79522703	111631573	4	4348											
GRM6	2916	broad.mit.edu	37	5	178410177	178410177	+	Missense_Mutation	SNP	C	C	T	rs151103990	byFrequency	TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	T	178410177	C	T	178410177	3	4	64	1	0	0	0	0	1	0	0	0	6808	536	19	1	471	1	GRM6	5	178410177	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08		178410177	2505083	5	4349											
ZKSCAN4	387032	broad.mit.edu	37	6	28219931	28219931	+	Translation_Start_Site	SNP	G	G	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	28219931	G	A	28219931	1	1	64	1	0	0	0	0	0	0	0	0	17701	1160	40	1		1	ZKSCAN4	6	28219931	Translation_Start_Site	SNP	G	TCGA-AK-3440-01A-01D-0966-08		28219931	142895136	6	4350											
C6orf222	389384	broad.mit.edu	37	6	36298372	36298372	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	T	36298372	C	T	36298372	4	4	64	1	0	0	0	0	0	1	0	0	2358	624	22	2	1906	2	C6orf222	6	36298372	Nonsense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08	8078441	36298372	134816695	7	4351											
RSPH3	83861	broad.mit.edu	37	6	159420497	159420497	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	T	159420497	C	T	159420497	3	4	64	1	0	0	0	0	1	0	0	0	13718	768	27	1	1202	1	RSPH3	6	159420497	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08	123122125	159420497	11694570	8	4352											
SLC12A9	56996	broad.mit.edu	37	7	100459450	100459451	+	Frame_Shift_Ins	INS	-	-	C	rs143756205	byFrequency	TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	C	100459451	-	C	100459450	7	5	64	1	0	1	1	0	0	0	0	0	14403	1203	42	0	1670	0	SLC12A9	7	100459450	Frame_Shift_Ins	INS	-	TCGA-AK-3440-01A-01D-0966-08		100459450	58679213	9	4353											
ASAP1	50807	broad.mit.edu	37	8	131127939	131127939	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	T	131127939	C	T	131127939	3	4	64	1	0	0	0	0	1	0	0	0	1010	536	19	1	1314	1	ASAP1	8	131127939	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08		131127939	15236083	10	4354											
TRPM3	80036	broad.mit.edu	37	9	73206031	73206031	+	Missense_Mutation	SNP	C	C	G			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	G	73206031	C	G	73206031	3	3	64	1	0	0	0	0	1	0	0	0	16599	864	30	4	2040	4	TRPM3	9	73206031	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08		73206031	68007400	11	4355											
ZNF79	7633	broad.mit.edu	37	9	130206998	130207012	+	In_Frame_Del	DEL	AGGCCTTCAGTTACT	AGGCCTTCAGTTACT	-			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	-	130207012	AGGCCTTCAGTTACT	-	130206998	7	5	64	1	0	1	0	1	0	0	0	0	18173	72	3	0	1037	0	ZNF79	9	130206998	In_Frame_Del	DEL	AGGCCTTCAGTTACT	TCGA-AK-3440-01A-01D-0966-08	57000967	130206998	11006433	12	4356											
ZNF79	7633	broad.mit.edu	37	9	130207131	130207131	+	Silent	SNP	T	T	C			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	C	130207131	T	C	130207131	2	2	64	1	0	0	0	0	0	0	0	1	18173	1567	55	3		3	ZNF79	9	130207131	Silent	SNP	T	TCGA-AK-3440-01A-01D-0966-08	133	130207131	11006300	13	4357	50	2									
ZNF79	7633	broad.mit.edu	37	9	130207140	130207140	+	Silent	SNP	A	A	G			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	G	130207140	A	G	130207140	2	3	64	1	0	0	0	0	0	0	0	1	18173	40	2	3		3	ZNF79	9	130207140	Silent	SNP	A	TCGA-AK-3440-01A-01D-0966-08	9	130207140	11006291	14	4358	50	2									
ELP4	26610	broad.mit.edu	37	11	31616324	31616324	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	T	31616324	C	T	31616324	3	4	64	1	0	0	0	0	1	0	0	0	5084	594	21	2	403	2	ELP4	11	31616324	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08		31616324	103390192	15	4359											
EMG1	10436	broad.mit.edu	37	12	7080212	7080213	+	RNA	INS	-	-	C	rs36063533		TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	3b3941ea-74eb-48e4-929b-a4dc00eabd1c	C	7080213	-	C	7080212	6	5	64	0	1	1	1	0	0	0	0	0	5092	1722	60	0		0	EMG1	12	7080212	RNA	INS	-	TCGA-AK-3440-01A-01D-0966-08		7080212	126771683	16	4360											
KIF5A	3798	broad.mit.edu	37	12	57972099	57972099	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	57972099	G	A	57972099	3	1	64	1	0	0	0	0	1	0	0	0	8312	1175	41	2	2602	2	KIF5A	12	57972099	Missense_Mutation	SNP	G	TCGA-AK-3440-01A-01D-0966-08	50891887	57972099	75879796	17	4361											
TSC22D1	8848	broad.mit.edu	37	13	45148706	45148708	+	In_Frame_Del	DEL	TGC	TGC	-	rs112613609		TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	3b3941ea-74eb-48e4-929b-a4dc00eabd1c	-	45148708	TGC	-	45148706	7	5	64	1	0	1	0	1	0	0	0	0	16619	1812	63	0	1857	0	TSC22D1	13	45148706	In_Frame_Del	DEL	TGC	TCGA-AK-3440-01A-01D-0966-08		45148706	70021172	18	4362											
SLITRK1	114798	broad.mit.edu	37	13	84454064	84454064	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	84454064	G	A	84454064	3	1	64	1	0	0	0	0	1	0	0	0	14755	1348	47	2	515	2	SLITRK1	13	84454064	Missense_Mutation	SNP	G	TCGA-AK-3440-01A-01D-0966-08	39305358	84454064	30715814	19	4363											
GABRG3	2567	broad.mit.edu	37	15	27777970	27777970	+	Silent	SNP	C	C	T			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	T	27777970	C	T	27777970	2	4	64	1	0	0	0	0	0	0	0	1	6180	854	30	2		2	GABRG3	15	27777970	Silent	SNP	C	TCGA-AK-3440-01A-01D-0966-08		27777970	74753422	20	4364											
HERC2	8924	broad.mit.edu	37	15	28491151	28491151	+	Silent	SNP	G	G	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	28491151	G	A	28491151	2	1	64	1	0	0	0	0	0	0	0	1	7065	1277	45	2		2	HERC2	15	28491151	Silent	SNP	G	TCGA-AK-3440-01A-01D-0966-08	713181	28491151	74040241	21	4365											
ABCC11	85320	broad.mit.edu	37	16	48218462	48218462	+	Missense_Mutation	SNP	C	C	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	48218462	C	A	48218462	3	1	64	1	0	0	0	0	1	0	0	0	51	738	26	4	1033	4	ABCC11	16	48218462	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08		48218462	42136291	22	4366	51	2									
ABCC11	85320	broad.mit.edu	37	16	48218463	48218463	+	Missense_Mutation	SNP	C	C	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	48218463	C	A	48218463	3	1	64	1	0	0	0	0	1	0	0	0	51	681	24	4	1034	4	ABCC11	16	48218463	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08	1	48218463	42136290	23	4367	51	2									
TAT	6898	broad.mit.edu	37	16	71610149	71610149	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	T	71610149	C	T	71610149	3	4	64	1	0	0	0	0	1	0	0	0	15602	884	31	1	1238	1	TAT	16	71610149	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08	23391686	71610149	18744604	24	4368											
MON1B	22879	broad.mit.edu	37	16	77228709	77228710	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	3b3941ea-74eb-48e4-929b-a4dc00eabd1c	G	77228710	-	G	77228709	7	5	64	1	0	1	1	0	0	0	0	0	9706	768	27	0	963	0	MON1B	16	77228709	Frame_Shift_Ins	INS	-	TCGA-AK-3440-01A-01D-0966-08	5618560	77228709	13126044	25	4369											
TP53	7157	broad.mit.edu	37	17	7579699	7579699	+	Splice_Site	SNP	C	C	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	7579699	C	A	7579699	5	1	64	1	0	0	0	0	0	0	1	0	16393	521	18	4	1209	4	TP53	17	7579699	Splice_Site	SNP	C	TCGA-AK-3440-01A-01D-0966-08		7579699	73615511	26	4370											
DUSP3	1845	broad.mit.edu	37	17	41852151	41852152	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	-	41852152	TG	-	41852151	7	5	64	1	0	1	0	1	0	0	0	0	4828	1580	55	0	284	0	DUSP3	17	41852151	Frame_Shift_Del	DEL	TG	TCGA-AK-3440-01A-01D-0966-08	34272452	41852151	39343059	27	4371											
LRP3	4037	broad.mit.edu	37	19	33696466	33696467	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	3b3941ea-74eb-48e4-929b-a4dc00eabd1c	C	33696467	-	C	33696466	7	5	64	1	0	1	1	0	0	0	0	0	8965	1551	54	0	808	0	LRP3	19	33696466	Frame_Shift_Ins	INS	-	TCGA-AK-3440-01A-01D-0966-08		33696466	25432517	28	4372											
LTBP4	8425	broad.mit.edu	37	19	41133075	41133075	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	41133075	G	A	41133075	3	1	64	1	0	0	0	0	1	0	0	0	9083	1087	38	1	4796	1	LTBP4	19	41133075	Missense_Mutation	SNP	G	TCGA-AK-3440-01A-01D-0966-08	7436609	41133075	17995908	29	4373											
BCL2L12	83596	broad.mit.edu	37	19	50169227	50169227	+	Silent	SNP	G	G	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	50169227	G	A	50169227	2	1	64	1	0	0	0	0	0	0	0	1	1370	1306	46	2		2	BCL2L12	19	50169227	Silent	SNP	G	TCGA-AK-3440-01A-01D-0966-08	9036152	50169227	8959756	30	4374											
ZNF628	89887	broad.mit.edu	37	19	55993042	55993042	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	-	55993042	C	-	55993042	7	5	64	1	0	1	0	1	0	0	0	0	18064	855	30	0	472	0	ZNF628	19	55993042	Frame_Shift_Del	DEL	C	TCGA-AK-3440-01A-01D-0966-08	5823815	55993042	3135941	31	4375											
CST9L	128821	broad.mit.edu	37	20	23545640	23545640	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	23545640	G	A	23545640	3	1	64	1	0	0	0	0	1	0	0	0	3982	1232	43	2	58	2	CST9L	20	23545640	Missense_Mutation	SNP	G	TCGA-AK-3440-01A-01D-0966-08		23545640	39479880	32	4376											
GEMIN8	54960	broad.mit.edu	37	X	14038421	14038421	+	Missense_Mutation	SNP	C	C	A			TCGA-AK-3440-01A-01D-0966-08	TCGA-AK-3440-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	877aacee-3600-4c18-840f-62a3956018b9	fd7a1e36-3c3b-4817-be33-3ce1f442bb7b	A	14038421	C	A	14038421	3	1	64	1	0	0	0	0	1	0	0	0	6341	595	21	4	488	4	GEMIN8	23	14038421	Missense_Mutation	SNP	C	TCGA-AK-3440-01A-01D-0966-08		14038421	141232139	33	4377											
BMP10	27302	broad.mit.edu	37	2	69093688	69093688	+	Missense_Mutation	SNP	G	G	A	rs141935259		TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	A	69093688	G	A	69093688	3	1	65	1	0	0	0	0	1	0	0	0	1457	1116	39	1	928	1	BMP10	2	69093688	Missense_Mutation	SNP	G	TCGA-AK-3443-01A-01D-0966-08		69093688	174105685	1	4378											
SPEG	10290	broad.mit.edu	37	2	220307861	220307861	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	A	220307861	G	A	220307861	3	1	65	1	0	0	0	0	1	0	0	0	15048	1073	37	1		1	SPEG	2	220307861	Missense_Mutation	SNP	G	TCGA-AK-3443-01A-01D-0966-08	151214173	220307861	22891512	2	4379											
ANO10	55129	broad.mit.edu	37	3	43642047	43642047	+	Silent	SNP	A	A	G			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	G	43642047	A	G	43642047	2	3	65	1	0	0	0	0	0	0	0	1	696	40	2	3		3	ANO10	3	43642047	Silent	SNP	A	TCGA-AK-3443-01A-01D-0966-08		43642047	154380383	3	4380											
SEMA3B	7869	broad.mit.edu	37	3	50314241	50314241	+	RNA	DEL	T	T	-			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	-	50314241	T	-	50314241	6	5	65	0	1	1	0	1	0	0	0	0	14038	1682	58	0		0	SEMA3B	3	50314241	RNA	DEL	T	TCGA-AK-3443-01A-01D-0966-08	6672194	50314241	147708189	4	4381											
PCDHB3	56132	broad.mit.edu	37	5	140482593	140482593	+	Missense_Mutation	SNP	C	C	A			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	A	140482593	C	A	140482593	3	1	65	1	0	0	0	0	1	0	0	0	11550	623	22	4	2362	4	PCDHB3	5	140482593	Missense_Mutation	SNP	C	TCGA-AK-3443-01A-01D-0966-08		140482593	40432667	5	4382											
KIAA0408	9729	broad.mit.edu	37	6	127768325	127768329	+	Frame_Shift_Del	DEL	TTCTG	TTCTG	-			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	-	127768329	TTCTG	-	127768325	7	5	65	1	0	1	0	1	0	0	0	0	8181	1841	64	0	953	0	KIAA0408	6	127768325	Frame_Shift_Del	DEL	TTCTG	TCGA-AK-3443-01A-01D-0966-08		127768325	43346742	6	4383											
TNKS	8658	broad.mit.edu	37	8	9413576	9413577	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	e9f65a55-337b-4a82-a85a-b0f9a68f599d	C	9413577	-	C	9413576	7	5	65	1	0	1	1	0	0	0	0	0	16331	275	10	0	129	0	TNKS	8	9413576	Frame_Shift_Ins	INS	-	TCGA-AK-3443-01A-01D-0966-08		9413576	136950446	7	4384											
LZTS1	11178	broad.mit.edu	37	8	20107349	20107349	+	Missense_Mutation	SNP	G	G	A	rs146878421		TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	A	20107349	G	A	20107349	3	1	65	1	0	0	0	0	1	0	0	0	9145	1087	38	1	119	1	LZTS1	8	20107349	Missense_Mutation	SNP	G	TCGA-AK-3443-01A-01D-0966-08	10693773	20107349	126256673	8	4385											
CHRM4	1132	broad.mit.edu	37	11	46407118	46407118	+	Silent	SNP	C	C	T			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	T	46407118	C	T	46407118	2	4	65	1	0	0	0	0	0	0	0	1	3381	755	27	1		1	CHRM4	11	46407118	Silent	SNP	C	TCGA-AK-3443-01A-01D-0966-08		46407118	88599398	9	4386											
C12orf43	64897	broad.mit.edu	37	12	121442108	121442109	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	e9f65a55-337b-4a82-a85a-b0f9a68f599d	G	121442109	-	G	121442108	7	5	65	1	0	1	1	0	0	0	0	0	1691	1696	59	0	155	0	C12orf43	12	121442108	Frame_Shift_Ins	INS	-	TCGA-AK-3443-01A-01D-0966-08		121442108	12409787	10	4387											
SOS2	6655	broad.mit.edu	37	14	50626628	50626628	+	Missense_Mutation	SNP	T	T	C			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	C	50626628	T	C	50626628	3	2	65	1	0	0	0	0	1	0	0	0	14950	1464	51	3	2681	3	SOS2	14	50626628	Missense_Mutation	SNP	T	TCGA-AK-3443-01A-01D-0966-08		50626628	56722912	11	4388											
HS3ST2	9956	broad.mit.edu	37	16	22826356	22826356	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	T	22826356	C	T	22826356	3	4	65	1	0	0	0	0	1	0	0	0	7371	739	26	2	427	2	HS3ST2	16	22826356	Missense_Mutation	SNP	C	TCGA-AK-3443-01A-01D-0966-08		22826356	67528397	12	4389											
PKD1L2	114780	broad.mit.edu	37	16	81190482	81190482	+	RNA	SNP	G	G	A			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	A	81190482	G	A	81190482	1	1	65	0	1	0	0	0	0	0	0	0	11972	1136	40	1		1	PKD1L2	16	81190482	RNA	SNP	G	TCGA-AK-3443-01A-01D-0966-08	58364126	81190482	9164271	13	4390											
GPS1	2873	broad.mit.edu	37	17	80014617	80014617	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	A	80014617	G	A	80014617	3	1	65	1	0	0	0	0	1	0	0	0	6739	1029	36	2	1440	2	GPS1	17	80014617	Missense_Mutation	SNP	G	TCGA-AK-3443-01A-01D-0966-08		80014617	1180593	14	4391											
MTMR3	8897	broad.mit.edu	37	22	30384486	30384486	+	Missense_Mutation	SNP	A	A	G			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	G	30384486	A	G	30384486	3	3	65	1	0	0	0	0	1	0	0	0	9952	410	15	3	242	3	MTMR3	22	30384486	Missense_Mutation	SNP	A	TCGA-AK-3443-01A-01D-0966-08		30384486	20920080	15	4392											
PLA2G6	8398	broad.mit.edu	37	22	38536025	38536025	+	Missense_Mutation	SNP	T	T	G			TCGA-AK-3443-01A-01D-0966-08	TCGA-AK-3443-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3dc72bb8-02a6-41b1-a6d6-5c275a82f89b	b5d14d5a-4207-450e-9edb-106ab50ecbc7	G	38536025	T	G	38536025	3	3	65	1	0	0	0	0	1	0	0	0	12015	1638	57	5	1711	5	PLA2G6	22	38536025	Missense_Mutation	SNP	T	TCGA-AK-3443-01A-01D-0966-08	8151539	38536025	12768541	16	4393											
SLC2A7	155184	hgsc.bcm.edu;ucsc.edu	37	1	9083076	9083076	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	9083076	T	G	9083076	3	3	66	1	0	0	0	0	1	0	0	0	14563	1609	56	5	1366	5	SLC2A7	1	9083076	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10		9083076	240167545	1	4394											
AKR7A3	22977	hgsc.bcm.edu	37	1	19612806	19612806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	19612806	C	T	19612806	3	4	66	1	0	0	0	0	1	0	0	0	476	652	23	1	744	1	AKR7A3	1	19612806	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	10529730	19612806	229637815	2	4395											
PTAFR	5724	hgsc.bcm.edu	37	1	28476738	28476738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	28476738	G	C	28476738	3	2	66	1	0	0	0	0	1	0	0	0	12733	1310	46	4	237	4	PTAFR	1	28476738	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	8863932	28476738	220773883	3	4396											
TIE1	7075	hgsc.bcm.edu;ucsc.edu	37	1	43770962	43770962	+	Silent	SNP	T	T	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	43770962	T	G	43770962	2	3	66	1	0	0	0	0	0	0	0	1	15905	1828	64	5		5	TIE1	1	43770962	Silent	SNP	T	TCGA-AK-3445-01A-02D-1361-10	15294224	43770962	205479659	4	4397											
MMACHC	25974	hgsc.bcm.edu	37	1	45966075	45966075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	45966075	A	C	45966075	3	2	66	1	0	0	0	0	1	0	0	0	9648	391	14	5	73	5	MMACHC	1	45966075	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	2195113	45966075	203284546	5	4398											
RBM15	64783	hgsc.bcm.edu	37	1	110883662	110883662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	110883662	T	G	110883662	3	3	66	1	0	0	0	0	1	0	0	0	13129	1490	52	5	1637	5	RBM15	1	110883662	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	64917587	110883662	138366959	6	4399											
CHI3L2	1117	hgsc.bcm.edu	37	1	111773534	111773534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	111773534	C	T	111773534	3	4	66	1	0	0	0	0	1	0	0	0	3343	797	28	2	251	2	CHI3L2	1	111773534	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	889872	111773534	137477087	7	4400											
DISP1	84976	hgsc.bcm.edu;ucsc.edu	37	1	223116621	223116621	+	Silent	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	223116621	G	A	223116621	2	1	66	1	0	0	0	0	0	0	0	1	4541	1132	40	1		1	DISP1	1	223116621	Silent	SNP	G	TCGA-AK-3445-01A-02D-1361-10	111343087	223116621	26134000	8	4401											
KIF26B	55083	hgsc.bcm.edu	37	1	245850299	245850299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	245850299	C	A	245850299	3	1	66	1	0	0	0	0	1	0	0	0	8302	477	17	4	4060	4	KIF26B	1	245850299	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	22733678	245850299	3400322	9	4402											
OR1C1	26188	hgsc.bcm.edu;ucsc.edu	37	1	247921568	247921568	+	Silent	SNP	C	C	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	247921568	C	A	247921568	2	1	66	1	0	0	0	0	0	0	0	1	10959	871	31	4		4	OR1C1	1	247921568	Silent	SNP	C	TCGA-AK-3445-01A-02D-1361-10	2071269	247921568	1329053	10	4403											
GREB1	9687	hgsc.bcm.edu	37	2	11725903	11725903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	11725903	C	A	11725903	3	1	66	1	0	0	0	0	1	0	0	0	6767	855	30	4	1061	4	GREB1	2	11725903	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10		11725903	231473470	11	4404											
ADCY3	109	hgsc.bcm.edu	37	2	25141268	25141268	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	25141268	A	T	25141268	3	4	66	1	0	0	0	0	1	0	0	0	295	304	11	5	2929	5	ADCY3	2	25141268	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	13415365	25141268	218058105	12	4405											
TMEM17	200728	hgsc.bcm.edu	37	2	62733189	62733189	+	Missense_Mutation	SNP	C	C	T	rs17854454	bycluster;byfrequency;by1000genomes	TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	62733189	C	T	62733189	3	4	66	1	0	0	0	0	1	0	0	0	16097	652	23	1	536	1	TMEM17	2	62733189	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	37591921	62733189	180466184	13	4406											
TRIM43	129868	hgsc.bcm.edu;ucsc.edu	37	2	96260870	96260870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	96260870	G	A	96260870	3	1	66	1	0	0	0	0	1	0	0	0	16530	1233	43	2	490	2	TRIM43	2	96260870	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	33527681	96260870	146938503	14	4407											
TGFBRAP1	9392	hgsc.bcm.edu;ucsc.edu	37	2	105889469	105889469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	105889469	T	A	105889469	3	1	66	1	0	0	0	0	1	0	0	0	15836	1606	56	5	779	5	TGFBRAP1	2	105889469	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	9628599	105889469	137309904	15	4408											
STAT1	6772	hgsc.bcm.edu;ucsc.edu	37	2	191874614	191874614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	191874614	T	A	191874614	3	1	66	1	0	0	0	0	1	0	0	0	15276	1783	62	5	2232	5	STAT1	2	191874614	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	85985145	191874614	51324759	16	4409											
DNAH7	56171	hgsc.bcm.edu;ucsc.edu	37	2	196753009	196753009	+	Silent	SNP	C	C	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	196753009	C	T	196753009	2	4	66	1	0	0	0	0	0	0	0	1	4608	639	23	1		1	DNAH7	2	196753009	Silent	SNP	C	TCGA-AK-3445-01A-02D-1361-10	4878395	196753009	46446364	17	4410											
ESPNL	339768	hgsc.bcm.edu	37	2	239038912	239038912	+	Silent	SNP	T	T	C	rs57813708	bycluster;byfrequency;by1000genomes	TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	239038912	T	C	239038912	2	2	66	1	0	0	0	0	0	0	0	1	5257	1770	62	3		3	ESPNL	2	239038912	Silent	SNP	T	TCGA-AK-3445-01A-02D-1361-10	42285903	239038912	4160461	18	4411											
ARPP21	10777	hgsc.bcm.edu;ucsc.edu	37	3	35835347	35835347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	35835347	T	G	35835347	3	3	66	1	0	0	0	0	1	0	0	0	978	1580	55	5	2419	5	ARPP21	3	35835347	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10		35835347	162187083	19	4412											
PLXNB1	5364	hgsc.bcm.edu;ucsc.edu	37	3	48457028	48457028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	48457028	T	C	48457028	3	2	66	1	0	0	0	0	1	0	0	0	12130	1725	60	3	2729	3	PLXNB1	3	48457028	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	12621681	48457028	149565402	20	4413											
NPRL2	10641	hgsc.bcm.edu	37	3	50387111	50387111	+	Silent	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	50387111	A	G	50387111	2	3	66	1	0	0	0	0	0	0	0	1	10604	340	12	3		3	NPRL2	3	50387111	Silent	SNP	A	TCGA-AK-3445-01A-02D-1361-10	1930083	50387111	147635319	21	4414											
PBRM1	55193	hgsc.bcm.edu	37	3	52668676	52668676	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	52668676	T	A	52668676	4	1	66	1	0	0	0	0	0	1	0	0	11498	1792	62	5	3737	5	PBRM1	3	52668676	Nonsense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	2281565	52668676	145353754	22	4415											
ITIH3	3699	hgsc.bcm.edu	37	3	52833444	52833444	+	Silent	SNP	T	T	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	52833444	T	C	52833444	2	2	66	1	0	0	0	0	0	0	0	1	7912	1509	53	3		3	ITIH3	3	52833444	Silent	SNP	T	TCGA-AK-3445-01A-02D-1361-10	164768	52833444	145188986	23	4416											
MAGI1	9223	hgsc.bcm.edu	37	3	65415780	65415780	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	65415780	A	C	65415780	3	2	66	1	0	0	0	0	1	0	0	0	9197	11	1	5	3088	5	MAGI1	3	65415780	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	12582336	65415780	132606650	24	4417											
COPB2	9276	hgsc.bcm.edu	37	3	139085577	139085577	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	139085577	G	C	139085577	3	2	66	1	0	0	0	0	1	0	0	0	3731	971	34	4	1035	4	COPB2	3	139085577	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	73669797	139085577	58936853	25	4418											
LRRIQ4	344657	hgsc.bcm.edu	37	3	169540305	169540305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	169540305	A	G	169540305	3	3	66	1	0	0	0	0	1	0	0	0	9038	14	1	3	598	3	LRRIQ4	3	169540305	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	30454728	169540305	28482125	26	4419											
MUC4	4585	hgsc.bcm.edu	37	3	195509459	195509459	+	Missense_Mutation	SNP	T	T	C	rs71187738	alternate_allele	TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	195509459	T	C	195509459	3	2	66	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195509459	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	25969154	195509459	2512971	27	4420											
FGFR3	2261	hgsc.bcm.edu	37	4	1808389	1808389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	1808389	C	A	1808389	3	1	66	1	0	0	0	0	1	0	0	0	5874	623	22	4	2360	4	FGFR3	4	1808389	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10		1808389	189345887	28	4421											
ARAP2	116984	hgsc.bcm.edu	37	4	36118735	36118735	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	36118735	A	T	36118735	4	4	66	1	0	0	0	0	0	1	0	0	839	372	13	5	1164	5	ARAP2	4	36118735	Nonsense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	34310346	36118735	155035541	29	4422											
FAT4	79633	hgsc.bcm.edu	37	4	126400930	126400930	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	126400930	C	G	126400930	3	3	66	1	0	0	0	0	1	0	0	0	5699	623	22	4	12562	4	FAT4	4	126400930	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	90282195	126400930	64753346	30	4423											
GTF2H2	2966	hgsc.bcm.edu	37	5	70343884	70343884	+	Missense_Mutation	SNP	C	C	G	rs162956	byfrequency	TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	70343884	C	G	70343884	3	3	66	1	0	0	0	0	1	0	0	0	6868	478	17	4	505	4	GTF2H2	5	70343884	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10		70343884	110571376	31	4424											
CDKL3	51265	hgsc.bcm.edu	37	5	133644047	133644047	+	Silent	SNP	A	A	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	133644047	A	C	133644047	2	2	66	1	0	0	0	0	0	0	0	1	3157	117	5	5		5	CDKL3	5	133644047	Silent	SNP	A	TCGA-AK-3445-01A-02D-1361-10	63300163	133644047	47271213	32	4425											
EGR1	1958	hgsc.bcm.edu	37	5	137803671	137803671	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	137803671	C	G	137803671	3	3	66	1	0	0	0	0	1	0	0	0	4973	709	25	4	1539	4	EGR1	5	137803671	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	4159624	137803671	43111589	33	4426											
PAIP2	51247	hgsc.bcm.edu	37	5	138699539	138699539	+	Silent	SNP	T	T	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	138699539	T	C	138699539	2	2	66	1	0	0	0	0	0	0	0	1	11404	1654	58	3		3	PAIP2	5	138699539	Silent	SNP	T	TCGA-AK-3445-01A-02D-1361-10	895868	138699539	42215721	34	4427											
SLC34A1	6569	hgsc.bcm.edu;ucsc.edu	37	5	176813287	176813287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	176813287	A	G	176813287	3	3	66	1	0	0	0	0	1	0	0	0	14580	159	6	3	335	3	SLC34A1	5	176813287	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	38113748	176813287	4101973	35	4428											
GNL1	2794	hgsc.bcm.edu	37	6	30520388	30520388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	30520388	T	G	30520388	3	3	66	1	0	0	0	0	1	0	0	0	6542	1696	59	5	888	5	GNL1	6	30520388	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10		30520388	140594679	36	4429											
SCUBE3	222663	hgsc.bcm.edu	37	6	35210009	35210009	+	Silent	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	35210009	G	A	35210009	2	1	66	1	0	0	0	0	0	0	0	1	13959	1219	43	2		2	SCUBE3	6	35210009	Silent	SNP	G	TCGA-AK-3445-01A-02D-1361-10	4689621	35210009	135905058	37	4430											
TTBK1	84630	hgsc.bcm.edu	37	6	43251671	43251671	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	43251671	T	T	43251671	3	4	66	1	0	0	0	0	1	0	0	0	16688	159	6	5	3243	5	TTBK1	6	43251671	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	8041662	43251671	127863396	38	4431											
SMPD2	6610	hgsc.bcm.edu	37	6	109762784	109762784	+	Silent	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	109762784	G	A	109762784	2	1	66	1	0	0	0	0	0	0	0	1	14818	1277	45	2		2	SMPD2	6	109762784	Silent	SNP	G	TCGA-AK-3445-01A-02D-1361-10	66511113	109762784	61352283	39	4432											
ECHDC1	55862	hgsc.bcm.edu;ucsc.edu	37	6	127611269	127611269	+	Silent	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	127611269	A	G	127611269	2	3	66	1	0	0	0	0	0	0	0	1	4895	291	11	3		3	ECHDC1	6	127611269	Silent	SNP	A	TCGA-AK-3445-01A-02D-1361-10	17848485	127611269	43503798	40	4433											
ICA1	3382	hgsc.bcm.edu	37	7	8167605	8167605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	8167605	T	A	8167605	3	1	66	1	0	0	0	0	1	0	0	0	7484	1406	49	5	231	5	ICA1	7	8167605	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10		8167605	150971058	41	4434											
PHKG1	5260	hgsc.bcm.edu;ucsc.edu	37	7	56156620	56156620	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	56156620	C	G	56156620	3	3	66	1	0	0	0	0	1	0	0	0	11853	680	24	4	1184	4	PHKG1	7	56156620	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	47989015	56156620	102982043	42	4435											
PEX1	5189	hgsc.bcm.edu	37	7	92147480	92147480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	92147480	T	A	92147480	3	1	66	1	0	0	0	0	1	0	0	0	11742	1722	60	5	3488	5	PEX1	7	92147480	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	35990860	92147480	66991183	43	4436											
MGAM	8972	hgsc.bcm.edu;ucsc.edu	37	7	141755356	141755356	+	Splice_Site	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	141755356	A	G	141755356	5	3	66	1	0	0	0	0	0	0	1	0	9548	202	7	3	3419	3	MGAM	7	141755356	Splice_Site	SNP	A	TCGA-AK-3445-01A-02D-1361-10	49607876	141755356	17383307	44	4437											
ZDHHC2	51201	hgsc.bcm.edu	37	8	17067950	17067950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	17067950	A	G	17067950	3	3	66	1	0	0	0	0	1	0	0	0	17622	130	5	3	949	3	ZDHHC2	8	17067950	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10		17067950	129296072	45	4438											
INTS9	55756	hgsc.bcm.edu	37	8	28645359	28645359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	28645359	A	C	28645359	3	2	66	1	0	0	0	0	1	0	0	0	7792	14	1	5	919	5	INTS9	8	28645359	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	11577409	28645359	117718663	46	4439											
RUNX1T1	862	hgsc.bcm.edu	37	8	92972623	92972623	+	Silent	SNP	G	G	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	92972623	G	T	92972623	2	4	66	1	0	0	0	0	0	0	0	1	13760	1219	43	4		4	RUNX1T1	8	92972623	Silent	SNP	G	TCGA-AK-3445-01A-02D-1361-10	64327264	92972623	53391399	47	4440											
KIAA1429	25962	hgsc.bcm.edu	37	8	95518778	95518778	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	95518778	T	G	95518778	3	3	66	1	0	0	0	0	1	0	0	0	8238	1780	62	5	1427	5	KIAA1429	8	95518778	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	2546155	95518778	50845244	48	4441											
PABPC1	26986	hgsc.bcm.edu	37	8	101717834	101717834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	101717834	T	C	101717834	3	2	66	1	0	0	0	0	1	0	0	0	11370	1551	54	3	252	3	PABPC1	8	101717834	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	6199056	101717834	44646188	49	4442											
KANK1	23189	hgsc.bcm.edu;ucsc.edu	37	9	745201	745201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	745201	C	A	745201	3	1	66	1	0	0	0	0	1	0	0	0	7983	913	32	4	4067	4	KANK1	9	745201	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10		745201	140468230	50	4443											
C9orf5	0	hgsc.bcm.edu	37	9	111798562	111798562	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	111798562	T	G	111798562	3	3	66	1	0	0	0	0	1	0	0	0	2488	1821	63	5	328	5	C9orf5	9	111798562	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	111053361	111798562	29414869	51	4444											
RGS3	5998	hgsc.bcm.edu;ucsc.edu	37	9	116291500	116291500	+	Splice_Site	SNP	G	G	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	116291500	G	C	116291500	5	2	66	1	0	0	0	0	0	0	1	0	13319	1014	35	4	2081	4	RGS3	9	116291500	Splice_Site	SNP	G	TCGA-AK-3445-01A-02D-1361-10	4492938	116291500	24921931	52	4445											
KIAA1217	56243	hgsc.bcm.edu	37	10	24832825	24832825	+	Silent	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	24832825	G	A	24832825	2	1	66	1	0	0	0	0	0	0	0	1	8223	962	34	2		2	KIAA1217	10	24832825	Silent	SNP	G	TCGA-AK-3445-01A-02D-1361-10		24832825	110701922	53	4446											
BMS1	9790	hgsc.bcm.edu;ucsc.edu	37	10	43293976	43293976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	43293976	G	A	43293976	3	1	66	1	0	0	0	0	1	0	0	0	1472	1145	40	1	2192	1	BMS1	10	43293976	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	18461151	43293976	92240771	54	4447											
TACR2	6865	hgsc.bcm.edu	37	10	71164734	71164734	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	71164734	T	G	71164734	3	3	66	1	0	0	0	0	1	0	0	0	15518	1812	63	5	155	5	TACR2	10	71164734	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	27870758	71164734	64370013	55	4448											
UNC5B	219699	hgsc.bcm.edu	37	10	73044586	73044586	+	Silent	SNP	C	C	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	73044586	C	T	73044586	2	4	66	1	0	0	0	0	0	0	0	1	17004	581	21	2		2	UNC5B	10	73044586	Silent	SNP	C	TCGA-AK-3445-01A-02D-1361-10	1879852	73044586	62490161	56	4449											
ANKRD1	27063	hgsc.bcm.edu	37	10	92675943	92675943	+	Silent	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	92675943	A	T	92675943	2	4	66	1	0	0	0	0	0	0	0	1	637	358	13	5		5	ANKRD1	10	92675943	Silent	SNP	A	TCGA-AK-3445-01A-02D-1361-10	19631357	92675943	42858804	57	4450											
GPR120	0	hgsc.bcm.edu;ucsc.edu	37	10	95347225	95347225	+	Silent	SNP	C	C	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	95347225	C	T	95347225	2	4	66	1	0	0	0	0	0	0	0	1	6643	610	22	2		2	GPR120	10	95347225	Silent	SNP	C	TCGA-AK-3445-01A-02D-1361-10	2671282	95347225	40187522	58	4451											
APIP	51074	hgsc.bcm.edu	37	11	34909860	34909860	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	34909860	A	T	34909860	4	4	66	1	0	0	0	0	0	1	0	0	774	389	14	5	299	5	APIP	11	34909860	Nonsense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10		34909860	100096656	59	4452											
CKAP5	9793	hgsc.bcm.edu	37	11	46804895	46804895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	46804895	T	A	46804895	3	1	66	1	0	0	0	0	1	0	0	0	3447	1838	64	5	4028	5	CKAP5	11	46804895	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	11895035	46804895	88201621	60	4453											
GLYAT	10249	hgsc.bcm.edu;ucsc.edu	37	11	58482811	58482811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	58482811	A	G	58482811	3	3	66	1	0	0	0	0	1	0	0	0	6486	159	6	3	743	3	GLYAT	11	58482811	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	11677916	58482811	76523705	61	4454											
SHANK2	22941	hgsc.bcm.edu;ucsc.edu	37	11	70331568	70331568	+	Silent	SNP	C	C	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	70331568	C	T	70331568	2	4	66	1	0	0	0	0	0	0	0	1	14278	912	32	2		2	SHANK2	11	70331568	Silent	SNP	C	TCGA-AK-3445-01A-02D-1361-10	11848757	70331568	64674948	62	4455											
PCF11	51585	hgsc.bcm.edu;ucsc.edu	37	11	82877339	82877339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	82877339	A	G	82877339	3	3	66	1	0	0	0	0	1	0	0	0	11580	188	7	3	1418	3	PCF11	11	82877339	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	12545771	82877339	52129177	63	4456											
OR6M1	390261	hgsc.bcm.edu;ucsc.edu	37	11	123676859	123676859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	123676859	G	T	123676859	3	4	66	1	0	0	0	0	1	0	0	0	11212	933	33	4	745	4	OR6M1	11	123676859	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	40799520	123676859	11329657	64	4457											
TP53AIP1	63970	hgsc.bcm.edu	37	11	128807594	128807594	+	Silent	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	128807594	A	T	128807594	2	4	66	1	0	0	0	0	0	0	0	1	16394	291	11	5		5	TP53AIP1	11	128807594	Silent	SNP	A	TCGA-AK-3445-01A-02D-1361-10	5130735	128807594	6198922	65	4458											
ZNF641	121274	hgsc.bcm.edu;ucsc.edu	37	12	48737149	48737149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	48737149	G	C	48737149	3	2	66	1	0	0	0	0	1	0	0	0	18069	1280	45	4	396	4	ZNF641	12	48737149	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10		48737149	85114746	66	4459											
RHEBL1	121268	hgsc.bcm.edu	37	12	49463534	49463534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	49463534	A	C	49463534	3	2	66	1	0	0	0	0	1	0	0	0	13342	304	11	5	548	5	RHEBL1	12	49463534	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	726385	49463534	84388361	67	4460											
KCNH3	23416	hgsc.bcm.edu;ucsc.edu	37	12	49950162	49950162	+	Silent	SNP	T	T	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	49950162	T	C	49950162	2	2	66	1	0	0	0	0	0	0	0	1	8040	1461	51	3		3	KCNH3	12	49950162	Silent	SNP	T	TCGA-AK-3445-01A-02D-1361-10	486628	49950162	83901733	68	4461											
HIGD1C	613227	hgsc.bcm.edu	37	12	51354786	51354786	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	51354786	C	G	51354786	3	3	66	1	0	0	0	0	1	0	0	0	7115	913	32	4	136	4	HIGD1C	12	51354786	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	1404624	51354786	82497109	69	4462											
SLC4A8	9498	hgsc.bcm.edu	37	12	51851247	51851247	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	51851247	C	G	51851247	3	3	66	1	0	0	0	0	1	0	0	0	14672	477	17	4	709	4	SLC4A8	12	51851247	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	496461	51851247	82000648	70	4463											
IL22	50616	hgsc.bcm.edu	37	12	68647211	68647211	+	Silent	SNP	T	T	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	68647211	T	C	68647211	2	2	66	1	0	0	0	0	0	0	0	1	7679	1490	52	3		3	IL22	12	68647211	Silent	SNP	T	TCGA-AK-3445-01A-02D-1361-10	16795964	68647211	65204684	71	4464											
NUPL1	9818	hgsc.bcm.edu;ucsc.edu	37	13	25876007	25876007	+	Silent	SNP	G	G	C	rs112477650	bycluster;byfrequency;by1000genomes	TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	25876007	G	C	25876007	2	2	66	1	0	0	0	0	0	0	0	1	10781	1103	39	4		4	NUPL1	13	25876007	Silent	SNP	G	TCGA-AK-3445-01A-02D-1361-10		25876007	89293871	72	4465											
CCNA1	8900	hgsc.bcm.edu;ucsc.edu	37	13	37012826	37012826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	37012826	A	C	37012826	3	2	66	1	0	0	0	0	1	0	0	0	2911	217	8	5	733	5	CCNA1	13	37012826	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	11136819	37012826	78157052	73	4466											
C13orf30	0	hgsc.bcm.edu	37	13	43358245	43358245	+	Silent	SNP	T	T	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	43358245	T	C	43358245	2	2	66	1	0	0	0	0	0	0	0	1	1727	1770	62	3		3	C13orf30	13	43358245	Silent	SNP	T	TCGA-AK-3445-01A-02D-1361-10	6345419	43358245	71811633	74	4467											
LRCH1	23143	hgsc.bcm.edu;ucsc.edu	37	13	47279242	47279242	+	Silent	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	47279242	A	T	47279242	2	4	66	1	0	0	0	0	0	0	0	1	8939	436	16	5		5	LRCH1	13	47279242	Silent	SNP	A	TCGA-AK-3445-01A-02D-1361-10	3920997	47279242	67890636	75	4468											
FNDC3A	22862	hgsc.bcm.edu;ucsc.edu	37	13	49775997	49775997	+	Missense_Mutation	SNP	A	A	G	rs45604939	bycluster;byfrequency;by1000genomes	TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	49775997	A	G	49775997	3	3	66	1	0	0	0	0	1	0	0	0	5976	43	2	3	3150	3	FNDC3A	13	49775997	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	2496755	49775997	65393881	76	4469											
PHF11	51131	hgsc.bcm.edu;ucsc.edu	37	13	50100561	50100561	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	50100561	T	G	50100561	3	3	66	1	0	0	0	0	1	0	0	0	11829	1490	52	5	842	5	PHF11	13	50100561	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	324564	50100561	65069317	77	4470											
ATP7B	540	hgsc.bcm.edu	37	13	52509781	52509781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	52509781	C	T	52509781	3	4	66	1	0	0	0	0	1	0	0	0	1191	739	26	2	333	2	ATP7B	13	52509781	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	2409220	52509781	62660097	78	4471											
TDRD3	81550	hgsc.bcm.edu;ucsc.edu	37	13	61084777	61084777	+	Silent	SNP	C	C	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	61084777	C	T	61084777	2	4	66	1	0	0	0	0	0	0	0	1	15744	697	25	2		2	TDRD3	13	61084777	Silent	SNP	C	TCGA-AK-3445-01A-02D-1361-10	8574996	61084777	54085101	79	4472											
TBC1D4	9882	hgsc.bcm.edu;ucsc.edu	37	13	75936579	75936579	+	Silent	SNP	G	G	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	75936579	G	C	75936579	2	2	66	1	0	0	0	0	0	0	0	1	15634	1277	45	4		4	TBC1D4	13	75936579	Silent	SNP	G	TCGA-AK-3445-01A-02D-1361-10	14851802	75936579	39233299	80	4473											
WDR89	112840	hgsc.bcm.edu	37	14	64065889	64065889	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	64065889	A	C	64065889	3	2	66	1	0	0	0	0	1	0	0	0	17348	11	1	5	395	5	WDR89	14	64065889	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10		64065889	43283651	81	4474											
TRPM1	4308	hgsc.bcm.edu	37	15	31294459	31294459	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	31294459	A	T	31294459	3	4	66	1	0	0	0	0	1	0	0	0	16597	246	9	5	437	5	TRPM1	15	31294459	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10		31294459	71236933	82	4475											
IQCH	64799	hgsc.bcm.edu;ucsc.edu	37	15	67553613	67553613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	67553613	C	A	67553613	3	1	66	1	0	0	0	0	1	0	0	0	7818	594	21	4	61	4	IQCH	15	67553613	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	36259154	67553613	34977779	83	4476											
UBN1	29855	hgsc.bcm.edu	37	16	4923048	4923048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	4923048	A	T	4923048	3	4	66	1	0	0	0	0	1	0	0	0	16904	449	16	5	1824	5	UBN1	16	4923048	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10		4923048	85431705	84	4477											
PDZD9	255762	hgsc.bcm.edu;ucsc.edu	37	16	22000067	22000067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	22000067	G	A	22000067	3	1	66	1	0	0	0	0	1	0	0	0	11713	1029	36	2	545	2	PDZD9	16	22000067	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	17077019	22000067	68354686	85	4478											
ZNF771	51333	hgsc.bcm.edu	37	16	30419384	30419384	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	30419384	G	C	30419384	3	2	66	1	0	0	0	0	1	0	0	0	18156	1059	37	4	12	4	ZNF771	16	30419384	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	8419317	30419384	59935369	86	4479											
CHD9	80205	hgsc.bcm.edu;ucsc.edu	37	16	53352213	53352213	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	53352213	A	C	53352213	3	2	66	1	0	0	0	0	1	0	0	0	3334	69	3	5	7768	5	CHD9	16	53352213	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	22932829	53352213	37002540	87	4480											
FHOD1	29109	hgsc.bcm.edu	37	16	67272131	67272131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	67272131	T	A	67272131	3	1	66	1	0	0	0	0	1	0	0	0	5889	1696	59	5	3045	5	FHOD1	16	67272131	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	13919918	67272131	23082622	88	4481											
PRPF8	10594	hgsc.bcm.edu;ucsc.edu	37	17	1559949	1559949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	1559949	G	A	1559949	3	1	66	1	0	0	0	0	1	0	0	0	12585	1348	47	2	1431	2	PRPF8	17	1559949	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10		1559949	79635261	89	4482											
USP6	9098	hgsc.bcm.edu	37	17	5033964	5033964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	5033964	G	A	5033964	3	1	66	1	0	0	0	0	1	0	0	0	17098	1145	40	1	146	1	USP6	17	5033964	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	3474015	5033964	76161246	90	4483											
MYO15A	51168	hgsc.bcm.edu;ucsc.edu	37	17	18082103	18082103	+	Silent	SNP	G	G	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	18082103	G	C	18082103	2	2	66	1	0	0	0	0	0	0	0	1	10070	1335	47	4		4	MYO15A	17	18082103	Silent	SNP	G	TCGA-AK-3445-01A-02D-1361-10	13048139	18082103	63113107	91	4484											
EME1	146956	hgsc.bcm.edu;ucsc.edu	37	17	48456247	48456247	+	Missense_Mutation	SNP	A	A	T	rs186599955	by1000genomes	TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	48456247	A	T	48456247	3	4	66	1	0	0	0	0	1	0	0	0	5090	14	1	5	1117	5	EME1	17	48456247	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	30374144	48456247	32738963	92	4485											
MRC2	9902	hgsc.bcm.edu;ucsc.edu	37	17	60769793	60769793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	60769793	T	A	60769793	3	1	66	1	0	0	0	0	1	0	0	0	9765	1464	51	5	4539	5	MRC2	17	60769793	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	12313546	60769793	20425417	93	4486											
USP36	57602	hgsc.bcm.edu;ucsc.edu	37	17	76824985	76824985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	76824985	G	T	76824985	3	4	66	1	0	0	0	0	1	0	0	0	17079	991	35	4	2855	4	USP36	17	76824985	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	16055192	76824985	4370225	94	4487											
KIAA1012	0	hgsc.bcm.edu;ucsc.edu	37	18	29488925	29488925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	29488925	G	T	29488925	3	4	66	1	0	0	0	0	1	0	0	0	8211	1174	41	4	3485	4	KIAA1012	18	29488925	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10		29488925	48588323	95	4488											
PEX11G	92960	hgsc.bcm.edu	37	19	7550828	7550828	+	Missense_Mutation	SNP	G	G	C	rs139507247		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	7550828	G	C	7550828	3	2	66	1	0	0	0	0	1	0	0	0	11746	933	33	4	596	4	PEX11G	19	7550828	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10		7550828	51578155	96	4489											
GALP	85569	hgsc.bcm.edu	37	19	56693586	56693586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	56693586	C	A	56693586	3	1	66	1	0	0	0	0	1	0	0	0	6233	479	17	4	192	4	GALP	19	56693586	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	49142758	56693586	2435397	97	4490											
ZNF547	284306	hgsc.bcm.edu;ucsc.edu	37	19	57889395	57889395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	57889395	C	A	57889395	3	1	66	1	0	0	0	0	1	0	0	0	17991	739	26	4	1061	4	ZNF547	19	57889395	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	1195809	57889395	1239588	98	4491											
TMC2	117532	hgsc.bcm.edu;ucsc.edu	37	20	2577820	2577820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	2577820	G	T	2577820	3	4	66	1	0	0	0	0	1	0	0	0	15997	971	34	4	1138	4	TMC2	20	2577820	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10		2577820	60447700	99	4492											
FASTKD5	60493	hgsc.bcm.edu;ucsc.edu	37	20	3129208	3129208	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	3129208	A	T	3129208	3	4	66	1	0	0	0	0	1	0	0	0	5695	188	7	5	1789	5	FASTKD5	20	3129208	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	551388	3129208	59896312	100	4493											
PROKR2	128674	hgsc.bcm.edu	37	20	5294732	5294732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	5294732	A	G	5294732	3	3	66	1	0	0	0	0	1	0	0	0	12563	188	7	3	877	3	PROKR2	20	5294732	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	2165524	5294732	57730788	101	4494											
OSBPL2	9885	hgsc.bcm.edu	37	20	60859155	60859155	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	60859155	T	A	60859155	3	1	66	1	0	0	0	0	1	0	0	0	11285	1406	49	5	960	5	OSBPL2	20	60859155	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	55564423	60859155	2166365	102	4495											
PRDM15	63977	hgsc.bcm.edu	37	21	43240050	43240050	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	43240050	C	G	43240050	3	3	66	1	0	0	0	0	1	0	0	0	12466	912	32	4	1305	4	PRDM15	21	43240050	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10		43240050	4889845	103	4496											
ZNF295	0	hgsc.bcm.edu	37	21	43412175	43412175	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	43412175	T	A	43412175	3	1	66	1	0	0	0	0	1	0	0	0	17839	1841	64	5	1174	5	ZNF295	21	43412175	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	172125	43412175	4717720	104	4497											
UPB1	51733	hgsc.bcm.edu	37	22	24916410	24916410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	G	24916410	A	G	24916410	3	3	66	1	0	0	0	0	1	0	0	0	17014	159	6	3	873	3	UPB1	22	24916410	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10		24916410	26388156	105	4498											
CSF2RB	1439	hgsc.bcm.edu;ucsc.edu	37	22	37326520	37326520	+	Silent	SNP	T	T	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	37326520	T	C	37326520	2	2	66	1	0	0	0	0	0	0	0	1	3937	1809	63	3		3	CSF2RB	22	37326520	Silent	SNP	T	TCGA-AK-3445-01A-02D-1361-10	12410110	37326520	13978046	106	4499											
CSF2RA	1438	hgsc.bcm.edu	37	X	1407729	1407729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	C	1407729	G	C	1407729	3	2	66	1	0	0	0	0	1	0	0	0	3936	1232	43	4	435	4	CSF2RA	23	1407729	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10		1407729	153862831	107	4500											
FAAH2	158584	hgsc.bcm.edu	37	X	57313272	57313272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	57313272	T	A	57313272	3	1	66	1	0	0	0	0	1	0	0	0	5358	1841	64	5	16	5	FAAH2	23	57313272	Missense_Mutation	SNP	T	TCGA-AK-3445-01A-02D-1361-10	55905543	57313272	97957288	108	4501											
AMOT	154796	hgsc.bcm.edu	37	X	112048196	112048196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	112048196	C	A	112048196	3	1	66	1	0	0	0	0	1	0	0	0	582	680	24	4	1527	4	AMOT	23	112048196	Missense_Mutation	SNP	C	TCGA-AK-3445-01A-02D-1361-10	54734924	112048196	43222364	109	4502											
ZDHHC9	51114	hgsc.bcm.edu;ucsc.edu	37	X	128946779	128946779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	128946779	A	T	128946779	3	4	66	1	0	0	0	0	1	0	0	0	17634	101	4	5	418	5	ZDHHC9	23	128946779	Missense_Mutation	SNP	A	TCGA-AK-3445-01A-02D-1361-10	16898583	128946779	26323781	110	4503											
MAGEA4	4103	hgsc.bcm.edu;ucsc.edu	37	X	151092605	151092605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3445-01A-02D-1361-10	TCGA-AK-3445-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	86a1ec02-2857-4a51-ab98-ffdfe76908d7	1dbf1726-2813-45cc-b2d5-7f57d57a1028	A	151092605	G	A	151092605	3	1	66	1	0	0	0	0	1	0	0	0	9175	1059	37	1	471	1	MAGEA4	23	151092605	Missense_Mutation	SNP	G	TCGA-AK-3445-01A-02D-1361-10	22145826	151092605	4177955	111	4504											
VHL	7428	hgsc.bcm.edu	37	3	10183817	10183817	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AK-3445-01A-02W-1359-10	TCGA-AK-3445-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	e787f715-4ee4-406a-aba0-f83a2c48726f	1dbf1726-2813-45cc-b2d5-7f57d57a1028	T	10183817	C	T	10183817	4	4	67	1	0	0	0	0	0	1	0	0	17174	711	25	2	288	2	VHL	3	10183817	Nonsense_Mutation	SNP	C	TCGA-AK-3445-01A-02W-1359-10		10183817	187838613	1	4505											
NBPF1	55672	hgsc.bcm.edu	37	1	16890598	16890598	+	Missense_Mutation	SNP	T	T	A	rs71228893	alternate_allele	TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	16890598	T	A	16890598	3	1	68	1	0	0	0	0	1	0	0	0	10199	1638	57	5	163	5	NBPF1	1	16890598	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10		16890598	232360023	1	4506											
NBPF3	84224	hgsc.bcm.edu	37	1	21809750	21809750	+	Silent	SNP	T	C	C	rs2651399	bycluster;byfrequency;bysubmitter	TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	21809750	C	C	21809750	2	2	68	1	0	0	0	0	0	0	0	1	10204	1413	49	3		3	NBPF3	1	21809750	Silent	SNP	T	TCGA-AK-3450-01A-02D-1361-10	4919152	21809750	227440871	2	4507											
PLK3	1263	hgsc.bcm.edu	37	1	45268708	45268708	+	Silent	SNP	C	C	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	45268708	C	T	45268708	2	4	68	1	0	0	0	0	0	0	0	1	12104	489	17	2		2	PLK3	1	45268708	Silent	SNP	C	TCGA-AK-3450-01A-02D-1361-10	23458958	45268708	203981913	3	4508											
DAB1	1600	hgsc.bcm.edu	37	1	57491680	57491680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	57491680	T	G	57491680	3	3	68	1	0	0	0	0	1	0	0	0	4219	1696	59	5	927	5	DAB1	1	57491680	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	12222972	57491680	191758941	4	4509											
SLC44A5	204962	hgsc.bcm.edu	37	1	75805277	75805277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	75805277	C	A	75805277	3	1	68	1	0	0	0	0	1	0	0	0	14652	478	17	4	2263	4	SLC44A5	1	75805277	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10	18313597	75805277	173445344	5	4510											
ASH1L	55870	hgsc.bcm.edu;ucsc.edu	37	1	155449150	155449150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	155449150	G	A	155449150	3	1	68	1	0	0	0	0	1	0	0	0	1041	1174	41	2	5487	2	ASH1L	1	155449150	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	79643873	155449150	93801471	6	4511											
TOMM40L	84134	hgsc.bcm.edu	37	1	161198049	161198049	+	Silent	SNP	G	G	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	161198049	G	A	161198049	2	1	68	1	0	0	0	0	0	0	0	1	16371	1190	42	2		2	TOMM40L	1	161198049	Silent	SNP	G	TCGA-AK-3450-01A-02D-1361-10	5748899	161198049	88052572	7	4512											
TNN	63923	hgsc.bcm.edu	37	1	175054573	175054573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	175054573	G	C	175054573	3	2	68	1	0	0	0	0	1	0	0	0	16335	1261	44	4	1285	4	TNN	1	175054573	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	13856524	175054573	74196048	8	4513											
RNASEL	6041	hgsc.bcm.edu	37	1	182555819	182555819	+	Silent	SNP	G	G	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	182555819	G	A	182555819	2	1	68	1	0	0	0	0	0	0	0	1	13429	1161	41	2		2	RNASEL	1	182555819	Silent	SNP	G	TCGA-AK-3450-01A-02D-1361-10	7501246	182555819	66694802	9	4514											
PTPN14	5784	hgsc.bcm.edu;ucsc.edu	37	1	214557759	214557759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	214557759	G	A	214557759	3	1	68	1	0	0	0	0	1	0	0	0	12794	1348	47	2	2152	2	PTPN14	1	214557759	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	32001940	214557759	34692862	10	4515											
OR2T29	343563	hgsc.bcm.edu	37	1	248722671	248722671	+	Missense_Mutation	SNP	T	T	A	rs9439338	bycluster	TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	248722671	T	A	248722671	3	1	68	1	0	0	0	0	1	0	0	0	11029	1609	56	5	829	5	OR2T29	1	248722671	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	34164912	248722671	527950	11	4516											
OR2T35	403244	hgsc.bcm.edu;ucsc.edu	37	1	248801912	248801912	+	Silent	SNP	C	C	G	rs1770044	byfrequency	TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	248801912	C	G	248801912	2	3	68	1	0	0	0	0	0	0	0	1	11033	465	17	4		4	OR2T35	1	248801912	Silent	SNP	C	TCGA-AK-3450-01A-02D-1361-10	79241	248801912	448709	12	4517											
COL3A1	1281	hgsc.bcm.edu	37	2	189863429	189863429	+	Silent	SNP	A	A	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	189863429	A	G	189863429	2	3	68	1	0	0	0	0	0	0	0	1	3690	291	11	3		3	COL3A1	2	189863429	Silent	SNP	A	TCGA-AK-3450-01A-02D-1361-10		189863429	53335944	13	4518											
MPP4	58538	hgsc.bcm.edu;ucsc.edu	37	2	202549860	202549860	+	Silent	SNP	G	G	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	202549860	G	T	202549860	2	4	68	1	0	0	0	0	0	0	0	1	9743	1335	47	4		4	MPP4	2	202549860	Silent	SNP	G	TCGA-AK-3450-01A-02D-1361-10	12686431	202549860	40649513	14	4519											
CRYGA	1418	hgsc.bcm.edu;ucsc.edu	37	2	209028271	209028271	+	Splice_Site	SNP	C	C	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	209028271	C	T	209028271	5	4	68	1	0	0	0	0	0	0	1	0	3916	521	18	2	526	2	CRYGA	2	209028271	Splice_Site	SNP	C	TCGA-AK-3450-01A-02D-1361-10	6478411	209028271	34171102	15	4520											
NDUFA10	4705	hgsc.bcm.edu	37	2	240958036	240958036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	240958036	G	C	240958036	3	2	68	1	0	0	0	0	1	0	0	0	10267	1087	38	4	614	4	NDUFA10	2	240958036	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	31929765	240958036	2241337	16	4521											
SETD5	55209	hgsc.bcm.edu;ucsc.edu	37	3	9517397	9517397	+	Silent	SNP	A	A	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	9517397	A	C	9517397	2	2	68	1	0	0	0	0	0	0	0	1	14147	146	6	5		5	SETD5	3	9517397	Silent	SNP	A	TCGA-AK-3450-01A-02D-1361-10		9517397	188505033	17	4522											
MUC4	4585	hgsc.bcm.edu	37	3	195507950	195507950	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	195507950	C	G	195507950	3	3	68	1	0	0	0	0	1	0	0	0	9985	826	29	4		4	MUC4	3	195507950	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10	185990553	195507950	2514480	18	4523											
OTOP1	133060	hgsc.bcm.edu	37	4	4199808	4199808	+	Silent	SNP	C	C	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	4199808	C	T	4199808	2	4	68	1	0	0	0	0	0	0	0	1	11312	564	20	2		2	OTOP1	4	4199808	Silent	SNP	C	TCGA-AK-3450-01A-02D-1361-10		4199808	186954468	19	4524											
LYAR	55646	hgsc.bcm.edu	37	4	4285456	4285456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	4285456	G	T	4285456	3	4	68	1	0	0	0	0	1	0	0	0	9110	1377	48	4	1157	4	LYAR	4	4285456	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	85648	4285456	186868820	20	4525											
FRYL	285527	hgsc.bcm.edu	37	4	48530033	48530033	+	Silent	SNP	C	C	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	48530033	C	G	48530033	2	3	68	1	0	0	0	0	0	0	0	1	6071	697	25	4		4	FRYL	4	48530033	Silent	SNP	C	TCGA-AK-3450-01A-02D-1361-10	44244577	48530033	142624243	21	4526											
LRRC66	339977	hgsc.bcm.edu	37	4	52861963	52861963	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	52861963	A	C	52861963	3	2	68	1	0	0	0	0	1	0	0	0	9025	159	6	5	1421	5	LRRC66	4	52861963	Missense_Mutation	SNP	A	TCGA-AK-3450-01A-02D-1361-10	4331930	52861963	138292313	22	4527											
KIT	3815	hgsc.bcm.edu	37	4	55593646	55593646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	55593646	T	A	55593646	3	1	68	1	0	0	0	0	1	0	0	0	8336	1406	49	5	1754	5	KIT	4	55593646	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	2731683	55593646	135560630	23	4528											
LPHN3	23284	hgsc.bcm.edu;ucsc.edu	37	4	62936168	62936168	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	62936168	C	G	62936168	3	3	68	1	0	0	0	0	1	0	0	0	8924	680	24	4	4042	4	LPHN3	4	62936168	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10	7342522	62936168	128218108	24	4529											
USP53	54532	hgsc.bcm.edu;ucsc.edu	37	4	120214163	120214163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	120214163	T	A	120214163	3	1	68	1	0	0	0	0	1	0	0	0	17096	1841	64	5	3077	5	USP53	4	120214163	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	57277995	120214163	70940113	25	4530											
ZFP42	132625	hgsc.bcm.edu;ucsc.edu	37	4	188923991	188923991	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	188923991	G	C	188923991	3	2	68	1	0	0	0	0	1	0	0	0	17662	933	33	4	32	4	ZFP42	4	188923991	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	68709828	188923991	2230285	26	4531											
HEATR7B2	0	hgsc.bcm.edu	37	5	41039597	41039597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	41039597	G	A	41039597	3	1	68	1	0	0	0	0	1	0	0	0	7042	942	33	2	2835	2	HEATR7B2	5	41039597	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10		41039597	139875663	27	4532											
THBS4	7060	hgsc.bcm.edu	37	5	79351746	79351746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	79351746	A	G	79351746	3	3	68	1	0	0	0	0	1	0	0	0	15868	391	14	3	441	3	THBS4	5	79351746	Missense_Mutation	SNP	A	TCGA-AK-3450-01A-02D-1361-10	38312149	79351746	101563514	28	4533											
SPATA9	83890	hgsc.bcm.edu	37	5	94994526	94994526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	94994526	C	A	94994526	3	1	68	1	0	0	0	0	1	0	0	0	15028	478	17	4	202	4	SPATA9	5	94994526	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10	15642780	94994526	85920734	29	4534											
FBXO38	81545	hgsc.bcm.edu	37	5	147821561	147821561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	147821561	C	A	147821561	3	1	68	1	0	0	0	0	1	0	0	0	5753	479	17	4	3500	4	FBXO38	5	147821561	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10	52827035	147821561	33093699	30	4535											
EHMT2	10919	hgsc.bcm.edu	37	6	31851591	31851591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	31851591	G	C	31851591	3	2	68	1	0	0	0	0	1	0	0	0	4986	1348	47	4	752	4	EHMT2	6	31851591	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10		31851591	139263476	31	4536											
SYNGAP1	8831	hgsc.bcm.edu	37	6	33411251	33411251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	33411251	C	A	33411251	3	1	68	1	0	0	0	0	1	0	0	0	15459	477	17	4	2980	4	SYNGAP1	6	33411251	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10	1559660	33411251	137703816	32	4537											
TULP4	56995	hgsc.bcm.edu;ucsc.edu	37	6	158873196	158873196	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	158873196	A	T	158873196	3	4	68	1	0	0	0	0	1	0	0	0	16788	188	7	5	773	5	TULP4	6	158873196	Missense_Mutation	SNP	A	TCGA-AK-3450-01A-02D-1361-10	125461945	158873196	12241871	33	4538											
DGKB	1607	hgsc.bcm.edu;ucsc.edu	37	7	14880860	14880860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	14880860	A	G	14880860	3	3	68	1	0	0	0	0	1	0	0	0	4468	304	11	3	2500	3	DGKB	7	14880860	Missense_Mutation	SNP	A	TCGA-AK-3450-01A-02D-1361-10		14880860	144257803	34	4539											
TRA2A	29896	hgsc.bcm.edu;ucsc.edu	37	7	23545398	23545398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	23545398	T	C	23545398	3	2	68	1	0	0	0	0	1	0	0	0	16445	1530	53	3	51	3	TRA2A	7	23545398	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	8664538	23545398	135593265	35	4540											
BMPER	168667	hgsc.bcm.edu	37	7	34118573	34118573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	34118573	T	C	34118573	3	2	68	1	0	0	0	0	1	0	0	0	1468	1551	54	3	1229	3	BMPER	7	34118573	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	10573175	34118573	125020090	36	4541											
PTPN12	5782	hgsc.bcm.edu	37	7	77256330	77256330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	77256330	A	G	77256330	3	3	68	1	0	0	0	0	1	0	0	0	12792	304	11	3	1384	3	PTPN12	7	77256330	Missense_Mutation	SNP	A	TCGA-AK-3450-01A-02D-1361-10	43137757	77256330	81882333	37	4542											
PUS7	54517	hgsc.bcm.edu	37	7	105135690	105135690	+	Silent	SNP	T	T	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	105135690	T	C	105135690	2	2	68	1	0	0	0	0	0	0	0	1	12846	1722	60	3		3	PUS7	7	105135690	Silent	SNP	T	TCGA-AK-3450-01A-02D-1361-10	27879360	105135690	54002973	38	4543											
RHEB	6009	hgsc.bcm.edu	37	7	151188050	151188050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	151188050	A	G	151188050	3	3	68	1	0	0	0	0	1	0	0	0	13341	420	15	3	479	3	RHEB	7	151188050	Missense_Mutation	SNP	A	TCGA-AK-3450-01A-02D-1361-10	46052360	151188050	7950613	39	4544											
GFRA2	2675	hgsc.bcm.edu	37	8	21560322	21560322	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	21560322	C	G	21560322	3	3	68	1	0	0	0	0	1	0	0	0	6355	478	17	4	193	4	GFRA2	8	21560322	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10		21560322	124803700	40	4545											
MAK16	84549	hgsc.bcm.edu	37	8	33346635	33346635	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	-	33346635	A	-	33346635	7	5	68	1	0	1	0	1	0	0	0	0	9205	412	15	0	388	0	MAK16	8	33346635	Frame_Shift_Del	DEL	A	TCGA-AK-3450-01A-02D-1361-10	11786313	33346635	113017387	41	4546											
ATP6V1H	51606	hgsc.bcm.edu	37	8	54727237	54727237	+	Silent	SNP	A	A	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	54727237	A	G	54727237	2	3	68	1	0	0	0	0	0	0	0	1	1189	291	11	3		3	ATP6V1H	8	54727237	Silent	SNP	A	TCGA-AK-3450-01A-02D-1361-10	21380602	54727237	91636785	42	4547											
DNAI1	27019	hgsc.bcm.edu	37	9	34514473	34514473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	34514473	T	C	34514473	3	2	68	1	0	0	0	0	1	0	0	0	4611	1406	49	3	1717	3	DNAI1	9	34514473	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10		34514473	106698958	43	4548											
RALGDS	5900	hgsc.bcm.edu	37	9	135985694	135985694	+	Silent	SNP	C	C	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	135985694	C	A	135985694	2	1	68	1	0	0	0	0	0	0	0	1	13029	697	25	4		4	RALGDS	9	135985694	Silent	SNP	C	TCGA-AK-3450-01A-02D-1361-10	101471221	135985694	5227737	44	4549											
KCNMA1	3778	hgsc.bcm.edu	37	10	78647067	78647067	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	-	78647067	T	-	78647067	7	5	68	1	0	1	0	1	0	0	0	0	8080	1551	54	0	75	0	KCNMA1	10	78647067	Frame_Shift_Del	DEL	T	TCGA-AK-3450-01A-02D-1361-10		78647067	56887680	45	4550											
LIPJ	142910	hgsc.bcm.edu	37	10	90356597	90356597	+	Silent	SNP	C	C	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	90356597	C	T	90356597	2	4	68	1	0	0	0	0	0	0	0	1	8833	825	29	2		2	LIPJ	10	90356597	Silent	SNP	C	TCGA-AK-3450-01A-02D-1361-10	11709530	90356597	45178150	46	4551											
DNMBP	23268	hgsc.bcm.edu;ucsc.edu	37	10	101728908	101728908	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	101728908	T	G	101728908	3	3	68	1	0	0	0	0	1	0	0	0	4676	1696	59	5	4561	5	DNMBP	10	101728908	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	11372311	101728908	33805839	47	4552											
METTL10	399818	hgsc.bcm.edu;ucsc.edu	37	10	126477708	126477708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	126477708	C	T	126477708	3	4	68	1	0	0	0	0	1	0	0	0	9501	826	29	2	700	2	METTL10	10	126477708	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10	24748800	126477708	9057039	48	4553											
STK33	65975	hgsc.bcm.edu	37	11	8457118	8457118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	8457118	C	T	8457118	3	4	68	1	0	0	0	0	1	0	0	0	15312	478	17	2	487	2	STK33	11	8457118	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10		8457118	126549398	49	4554											
SOX6	55553	hgsc.bcm.edu	37	11	16010638	16010639	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	-	16010639	GG	-	16010638	7	5	68	1	0	1	0	1	0	0	0	0	14968	1348	47	0	627	0	SOX6	11	16010638	Frame_Shift_Del	DEL	GG	TCGA-AK-3450-01A-02D-1361-10	7553520	16010638	118995878	50	4555											
ABTB2	25841	hgsc.bcm.edu	37	11	34186251	34186251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	34186251	G	A	34186251	3	1	68	1	0	0	0	0	1	0	0	0	103	1294	45	2	1143	2	ABTB2	11	34186251	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	18175613	34186251	100820265	51	4556											
PRDM10	56980	hgsc.bcm.edu;ucsc.edu	37	11	129772385	129772385	+	Silent	SNP	T	T	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	129772385	T	C	129772385	2	2	68	1	0	0	0	0	0	0	0	1	12461	1490	52	3		3	PRDM10	11	129772385	Silent	SNP	T	TCGA-AK-3450-01A-02D-1361-10	95586134	129772385	5234131	52	4557											
RAD51AP1	10635	hgsc.bcm.edu;ucsc.edu	37	12	4655496	4655496	+	Silent	SNP	C	C	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	4655496	C	T	4655496	2	4	68	1	0	0	0	0	0	0	0	1	12999	900	32	2		2	RAD51AP1	12	4655496	Silent	SNP	C	TCGA-AK-3450-01A-02D-1361-10		4655496	129196399	53	4558											
THAP2	83591	hgsc.bcm.edu	37	12	72068032	72068032	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	72068032	C	G	72068032	3	3	68	1	0	0	0	0	1	0	0	0	15856	768	27	4	127	4	THAP2	12	72068032	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10	67412536	72068032	61783863	54	4559											
C12orf63	374467	hgsc.bcm.edu	37	12	97102553	97102553	+	Silent	SNP	G	G	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	97102553	G	A	97102553	2	1	68	1	0	0	0	0	0	0	0	1	1708	933	33	2		2	C12orf63	12	97102553	Silent	SNP	G	TCGA-AK-3450-01A-02D-1361-10	25034521	97102553	36749342	55	4560											
DNAH10	196385	hgsc.bcm.edu;ucsc.edu	37	12	124416393	124416393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	124416393	G	T	124416393	3	4	68	1	0	0	0	0	1	0	0	0	4600	1014	35	4	13067	4	DNAH10	12	124416393	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	27313840	124416393	9435502	56	4561											
C13orf1	0	hgsc.bcm.edu	37	13	50505170	50505170	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	50505170	G	C	50505170	3	2	68	1	0	0	0	0	1	0	0	0	1719	1281	45	4	399	4	C13orf1	13	50505170	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10		50505170	64664708	57	4562											
MYO16	23026	hgsc.bcm.edu	37	13	109318342	109318342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	109318342	G	C	109318342	3	2	68	1	0	0	0	0	1	0	0	0	10071	1087	38	4	73	4	MYO16	13	109318342	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	58813172	109318342	5851536	58	4563											
DHRS4L2	317749	hgsc.bcm.edu;ucsc.edu	37	14	24464310	24464310	+	Missense_Mutation	SNP	C	C	A	rs61999853	bycluster;byfrequency;by1000genomes	TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	24464310	C	A	24464310	3	1	68	1	0	0	0	0	1	0	0	0	4496	680	24	4	386	4	DHRS4L2	14	24464310	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10		24464310	82885230	59	4564											
NIN	51199	hgsc.bcm.edu	37	14	51206109	51206109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	51206109	G	C	51206109	3	2	68	1	0	0	0	0	1	0	0	0	10424	1386	48	4	1028	4	NIN	14	51206109	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10	26741799	51206109	56143431	60	4565											
CATSPERB	79820	hgsc.bcm.edu	37	14	92074657	92074657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	92074657	T	G	92074657	3	3	68	1	0	0	0	0	1	0	0	0	2693	1725	60	5	684	5	CATSPERB	14	92074657	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	40868548	92074657	15274883	61	4566											
HERC2	8924	hgsc.bcm.edu;ucsc.edu	37	15	28420762	28420762	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	28420762	C	G	28420762	3	3	68	1	0	0	0	0	1	0	0	0	7065	536	19	4	4897	4	HERC2	15	28420762	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10		28420762	74110630	62	4567											
NUSAP1	51203	hgsc.bcm.edu	37	15	41650369	41650369	+	Silent	SNP	T	T	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	41650369	T	C	41650369	2	2	68	1	0	0	0	0	0	0	0	1	10785	1538	54	3		3	NUSAP1	15	41650369	Silent	SNP	T	TCGA-AK-3450-01A-02D-1361-10	13229607	41650369	60881023	63	4568											
BLM	641	hgsc.bcm.edu	37	15	91306293	91306293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	91306293	T	A	91306293	3	1	68	1	0	0	0	0	1	0	0	0	1445	1403	49	5	2006	5	BLM	15	91306293	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	49655924	91306293	11225099	64	4569											
SRRM2	23524	hgsc.bcm.edu	37	16	2807932	2807932	+	Silent	SNP	T	T	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	2807932	T	C	2807932	2	2	68	1	0	0	0	0	0	0	0	1	15181	1538	54	3		3	SRRM2	16	2807932	Silent	SNP	T	TCGA-AK-3450-01A-02D-1361-10		2807932	87546821	65	4570											
TNFRSF17	608	hgsc.bcm.edu;ucsc.edu	37	16	12061465	12061465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	12061465	A	C	12061465	3	2	68	1	0	0	0	0	1	0	0	0	16302	15	1	5	326	5	TNFRSF17	16	12061465	Missense_Mutation	SNP	A	TCGA-AK-3450-01A-02D-1361-10	9253533	12061465	78293288	66	4571											
SALL1	6299	hgsc.bcm.edu	37	16	51174659	51174659	+	Silent	SNP	G	G	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	51174659	G	A	51174659	2	1	68	1	0	0	0	0	0	0	0	1	13823	933	33	2		2	SALL1	16	51174659	Silent	SNP	G	TCGA-AK-3450-01A-02D-1361-10	39113194	51174659	39180094	67	4572											
TMEM132E	124842	hgsc.bcm.edu	37	17	32961826	32961826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	32961826	G	A	32961826	3	1	68	1	0	0	0	0	1	0	0	0	16060	1116	39	1	1457	1	TMEM132E	17	32961826	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10		32961826	48233384	68	4573											
MAP2K6	5608	hgsc.bcm.edu	37	17	67537827	67537827	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	67537827	T	G	67537827	3	3	68	1	0	0	0	0	1	0	0	0	9248	1841	64	5	984	5	MAP2K6	17	67537827	Missense_Mutation	SNP	T	TCGA-AK-3450-01A-02D-1361-10	34576001	67537827	13657383	69	4574											
L3MBTL4	91133	hgsc.bcm.edu;ucsc.edu	37	18	5960153	5960153	+	Silent	SNP	C	C	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	5960153	C	G	5960153	2	3	68	1	0	0	0	0	0	0	0	1	8601	581	21	4		4	L3MBTL4	18	5960153	Silent	SNP	C	TCGA-AK-3450-01A-02D-1361-10		5960153	72117095	70	4575											
SLC25A23	79085	hgsc.bcm.edu;ucsc.edu	37	19	6444252	6444252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	A	6444252	C	A	6444252	3	1	68	1	0	0	0	0	1	0	0	0	14499	536	19	4	282	4	SLC25A23	19	6444252	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10		6444252	52684731	71	4576											
SPAG4	6676	hgsc.bcm.edu	37	20	34208697	34208697	+	Splice_Site	SNP	T	T	G	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	G	34208697	T	G	34208697	5	3	68	1	0	0	0	0	0	0	1	0	14993	1710	59	5	1211	5	SPAG4	20	34208697	Splice_Site	SNP	T	TCGA-AK-3450-01A-02D-1361-10		34208697	28816823	72	4577											
ZNF217	7764	hgsc.bcm.edu	37	20	52192307	52192307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	52192307	C	T	52192307	3	4	68	1	0	0	0	0	1	0	0	0	17784	478	17	2	158	2	ZNF217	20	52192307	Missense_Mutation	SNP	C	TCGA-AK-3450-01A-02D-1361-10	17983610	52192307	10833213	73	4578											
SEC14L3	266629	hgsc.bcm.edu;ucsc.edu	37	22	30866555	30866555	+	Silent	SNP	G	G	T	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	T	30866555	G	T	30866555	2	4	68	1	0	0	0	0	0	0	0	1	13996	1161	41	4		4	SEC14L3	22	30866555	Silent	SNP	G	TCGA-AK-3450-01A-02D-1361-10		30866555	20438011	74	4579											
USP26	83844	hgsc.bcm.edu;ucsc.edu	37	X	132160053	132160053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3450-01A-02D-1361-10	TCGA-AK-3450-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	1e9e638b-f766-4e2a-bfa1-b63721920186	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	132160053	G	C	132160053	3	2	68	1	0	0	0	0	1	0	0	0	17069	1165	41	4	548	4	USP26	23	132160053	Missense_Mutation	SNP	G	TCGA-AK-3450-01A-02D-1361-10		132160053	23110507	75	4580											
VHL	7428	hgsc.bcm.edu	37	3	10183873	10183873	+	Splice_Site	SNP	T	T	C	novel		TCGA-AK-3450-01A-02W-1359-10	TCGA-AK-3450-10A-01D-1361-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	ea3eb63e-3ce6-4865-8c38-1e20a4fba26e	309f8d72-a55d-4b31-bd5a-18a624cf2347	C	10183873	T	C	10183873	5	2	69	1	0	0	0	0	0	0	1	0	17174	1652	57	3	344	3	VHL	3	10183873	Splice_Site	SNP	T	TCGA-AK-3450-01A-02W-1359-10		10183873	187838557	1	4581											
ZMYM1	79830	broad.mit.edu;hgsc.bcm.edu	37	1	35578967	35578967	+	Silent	SNP	G	G	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	35578967	G	A	35578967	2	1	70	1	0	0	0	0	0	0	0	1	17711	962	34	2		2	ZMYM1	1	35578967	Silent	SNP	G	TCGA-AK-3451-01A-02D-1251-10		35578967	213671654	1	4582											
FAM183A	440585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43616487	43616487	+	Silent	SNP	A	A	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	43616487	A	C	43616487	2	2	70	1	0	0	0	0	0	0	0	1	5514	175	7	5		5	FAM183A	1	43616487	Silent	SNP	A	TCGA-AK-3451-01A-02D-1251-10	8037520	43616487	205634134	2	4583											
CYP4A11	1579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	47402390	47402390	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	47402390	A	C	47402390	4	2	70	1	0	0	0	0	0	1	0	0	4185	224	8	5	1139	5	CYP4A11	1	47402390	Nonsense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	3785903	47402390	201848231	3	4584											
SCP2	6342	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	53516318	53516318	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	53516318	T	A	53516318	3	1	70	1	0	0	0	0	1	0	0	0	13947	1464	51	5	1672	5	SCP2	1	53516318	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	6113928	53516318	195734303	4	4585											
LRRC8D	55144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	90400298	90400298	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	-	90400298	T	-	90400298	7	5	70	1	0	1	0	1	0	0	0	0	9031	1500	52	0	1673	0	LRRC8D	1	90400298	Frame_Shift_Del	DEL	T	TCGA-AK-3451-01A-02D-1251-10	36883980	90400298	158850323	5	4586											
EVI5	7813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	93089777	93089777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	93089777	C	T	93089777	3	4	70	1	0	0	0	0	1	0	0	0	5291	922	32	2	717	2	EVI5	1	93089777	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	2689479	93089777	156160844	6	4587											
KCNT2	343450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	196250087	196250087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	196250087	C	A	196250087	3	1	70	1	0	0	0	0	1	0	0	0	8099	913	32	4	610	4	KCNT2	1	196250087	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	103160310	196250087	53000534	7	4588											
KIF21B	23046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200960791	200960791	+	Silent	SNP	G	G	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	200960791	G	T	200960791	2	4	70	1	0	0	0	0	0	0	0	1	8296	1219	43	4		4	KIF21B	1	200960791	Silent	SNP	G	TCGA-AK-3451-01A-02D-1251-10	4710704	200960791	48289830	8	4589											
URB2	9816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	229773365	229773365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	229773365	G	A	229773365	3	1	70	1	0	0	0	0	1	0	0	0	17037	1232	43	2	3015	2	URB2	1	229773365	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	28812574	229773365	19477256	9	4590											
SEMA4F	10505	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	74902021	74902021	+	Silent	SNP	G	G	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	74902021	G	T	74902021	2	4	70	1	0	0	0	0	0	0	0	1	14048	1219	43	4		4	SEMA4F	2	74902021	Silent	SNP	G	TCGA-AK-3451-01A-02D-1251-10		74902021	168297352	10	4591											
TSGA10	80705	broad.mit.edu;hgsc.bcm.edu	37	2	99725301	99725301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	99725301	C	T	99725301	3	4	70	1	0	0	0	0	1	0	0	0	16629	835	29	2	1951	2	TSGA10	2	99725301	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	24823280	99725301	143474072	11	4592											
GALNT5	11227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	158114785	158114785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	158114785	G	A	158114785	3	1	70	1	0	0	0	0	1	0	0	0	6223	1174	41	2	193	2	GALNT5	2	158114785	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	58389484	158114785	85084588	12	4593											
XIRP2	129446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	167760143	167760143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	167760143	G	T	167760143	3	4	70	1	0	0	0	0	1	0	0	0	17442	1029	36	4	153	4	XIRP2	2	167760143	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	9645358	167760143	75439230	13	4594											
SPC25	57405	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	169745777	169745777	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	169745777	T	G	169745777	3	3	70	1	0	0	0	0	1	0	0	0	15034	1783	62	5	536	5	SPC25	2	169745777	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	1985634	169745777	73453596	14	4595											
ITGA6	3655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	173352130	173352130	+	Silent	SNP	G	G	A	rs141344340		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	173352130	G	A	173352130	2	1	70	1	0	0	0	0	0	0	0	1	7887	1132	40	1		1	ITGA6	2	173352130	Silent	SNP	G	TCGA-AK-3451-01A-02D-1251-10	3606353	173352130	69847243	15	4596											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179582267	179582267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	179582267	G	A	179582267	3	1	70	1	0	0	0	0	1	0	0	0	16747	1203	42	2	79299	2	TTN	2	179582267	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	6230137	179582267	63617106	16	4597											
AOX1	316	hgsc.bcm.edu;ucsc.edu	37	2	201533350	201533350	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	-	201533350	T	-	201533350	7	5	70	1	0	1	0	1	0	0	0	0	729	1493	52	0	3752	0	AOX1	2	201533350	Frame_Shift_Del	DEL	T	TCGA-AK-3451-01A-02D-1251-10	21951083	201533350	41666023	17	4598											
CCDC108	255101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219900064	219900064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	219900064	T	G	219900064	3	3	70	1	0	0	0	0	1	0	0	0	2745	1580	55	5	5369	5	CCDC108	2	219900064	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	18366714	219900064	23299309	18	4599											
SPHKAP	80309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228883640	228883640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	228883640	T	C	228883640	3	2	70	1	0	0	0	0	1	0	0	0	15060	1783	62	3	3196	3	SPHKAP	2	228883640	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	8983576	228883640	14315733	19	4600											
UGT1A7	54577	broad.mit.edu	37	2	234591037	234591037	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	234591037	A	A	234591037	3	1	70	1	0	0	0	0	1	0	0	0	16962	1319	46	2	456	2	UGT1A7	2	234591037	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	5707397	234591037	8608336	20	4601											
UGT1A7	54577	broad.mit.edu;hgsc.bcm.edu	37	2	234591142	234591142	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	234591142	C	G	234591142	3	3	70	1	0	0	0	0	1	0	0	0	16962	913	32	4	561	4	UGT1A7	2	234591142	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	105	234591142	8608231	21	4602											
RFTN1	23180	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	16368331	16368331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	16368331	T	C	16368331	3	2	70	1	0	0	0	0	1	0	0	0	13271	1406	49	3	549	3	RFTN1	3	16368331	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10		16368331	181654099	22	4603											
NEK10	152110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	27332981	27332982	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	AA	27332982	-	AA	27332981	7	5	70	1	0	1	1	0	0	0	0	0	10329	1403	49	0	700	0	NEK10	3	27332981	Frame_Shift_Ins	INS	-	TCGA-AK-3451-01A-02D-1251-10	10964650	27332981	170689449	23	4604											
PLXNB1	5364	broad.mit.edu	37	3	48463743	48463743	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	48463743	T	T	48463743	3	4	70	1	0	0	0	0	1	0	0	0	12130	1310	46	4	5127	4	PLXNB1	3	48463743	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	21130762	48463743	149558687	24	4605											
MST1R	4486	broad.mit.edu	37	3	49940468	49940476	+	In_Frame_Del	DEL	CCTTGCTCA	-	-	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	CCTTGCTCA	CCTTGCTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	-	49940476	-	-	49940468	7	5	70	1	0	1	0	1	0	0	0	0	9898	739	26	0	3707	0	MST1R	3	49940468	In_Frame_Del	DEL	CCTTGCTCA	TCGA-AK-3451-01A-02D-1251-10	1476725	49940468	148081962	25	4606											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52442521	52442521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	52442521	T	C	52442521	3	2	70	1	0	0	0	0	1	0	0	0	1311	1435	50	3	2021	3	BAP1	3	52442521	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	2502053	52442521	145579909	26	4607											
PTPRG	5793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	62258667	62258667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	62258667	C	G	62258667	3	3	70	1	0	0	0	0	1	0	0	0	12815	796	28	4	3315	4	PTPRG	3	62258667	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	9816146	62258667	135763763	27	4608											
DPPA2	151871	hgsc.bcm.edu;ucsc.edu	37	3	109031461	109031461	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	-	109031461	C	-	109031461	7	5	70	1	0	1	0	1	0	0	0	0	4736	864	30	0	808	0	DPPA2	3	109031461	Frame_Shift_Del	DEL	C	TCGA-AK-3451-01A-02D-1251-10	46772794	109031461	88990969	28	4609											
MME	4311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	154856020	154856020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	154856020	G	T	154856020	3	4	70	1	0	0	0	0	1	0	0	0	9652	1319	46	4	880	4	MME	3	154856020	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	45824559	154856020	43166410	29	4610	52	2									
MME	4311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	154856021	154856021	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	154856021	C	G	154856021	3	3	70	1	0	0	0	0	1	0	0	0	9652	739	26	4	881	4	MME	3	154856021	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	1	154856021	43166409	30	4611	52	2									
MUC4	4585	broad.mit.edu	37	3	195507059	195507059	+	Missense_Mutation	SNP	T	C	C	rs76367261		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	195507059	C	C	195507059	3	2	70	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195507059	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	40651038	195507059	2515371	31	4612											
CTNND2	1501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	11018139	11018139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	11018139	G	T	11018139	3	4	70	1	0	0	0	0	1	0	0	0	4022	1299	45	4	666	4	CTNND2	5	11018139	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10		11018139	169897121	32	4613											
MTMR12	54545	broad.mit.edu;hgsc.bcm.edu	37	5	32242165	32242165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	32242165	A	G	32242165	3	3	70	1	0	0	0	0	1	0	0	0	9948	372	13	3	1094	3	MTMR12	5	32242165	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	21224026	32242165	148673095	33	4614											
AFF4	27125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	132270528	132270528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	132270528	T	C	132270528	3	2	70	1	0	0	0	0	1	0	0	0	359	1493	52	3	3338	3	AFF4	5	132270528	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	100028363	132270528	48644732	34	4615											
PCDHA12	56137	broad.mit.edu	37	5	140256584	140256584	+	Silent	SNP	G	A	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	140256584	A	A	140256584	2	1	70	1	0	0	0	0	0	0	0	1	11529	1103	39	1		1	PCDHA12	5	140256584	Silent	SNP	G	TCGA-AK-3451-01A-02D-1251-10	7986056	140256584	40658676	35	4616											
GEMIN5	25929	hgsc.bcm.edu;ucsc.edu	37	5	154287300	154287300	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	-	154287300	A	-	154287300	7	5	70	1	0	1	0	1	0	0	0	0	6338	131	5	0	2332	0	GEMIN5	5	154287300	Frame_Shift_Del	DEL	A	TCGA-AK-3451-01A-02D-1251-10	14030716	154287300	26627960	36	4617											
GABRG2	2566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	161524855	161524855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	161524855	A	G	161524855	3	3	70	1	0	0	0	0	1	0	0	0	6179	391	14	3	553	3	GABRG2	5	161524855	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	7237555	161524855	19390405	37	4618											
CYP21A2	1589	broad.mit.edu	37	6	32006526	32006526	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	32006526	A	A	32006526	3	1	70	1	0	0	0	0	1	0	0	0	4155	507	18	4	1757	4	CYP21A2	6	32006526	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10		32006526	139108541	38	4619											
IGF2R	3482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160468352	160468352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	160468352	G	A	160468352	3	1	70	1	0	0	0	0	1	0	0	0	7583	1203	42	2	2275	2	IGF2R	6	160468352	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	128461826	160468352	10646715	39	4620											
CARD11	84433	broad.mit.edu;ucsc.edu	37	7	2954892	2954892	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	2954892	C	C	2954892	3	2	70	1	0	0	0	0	1	0	0	0	2647	971	34	4	666	4	CARD11	7	2954892	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10		2954892	156183771	40	4621											
DDC	1644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	50611748	50611748	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	50611748	C	G	50611748	3	3	70	1	0	0	0	0	1	0	0	0	4327	912	32	4	1458	4	DDC	7	50611748	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	47656856	50611748	108526915	41	4622											
C7orf23	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	86826037	86826037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	86826037	A	T	86826037	3	4	70	1	0	0	0	0	1	0	0	0	2381	14	1	5	88	5	C7orf23	7	86826037	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	36214289	86826037	72312626	42	4623											
CAPZA2	830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	116556165	116556165	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	116556165	A	T	116556165	3	4	70	1	0	0	0	0	1	0	0	0	2643	14	1	5	743	5	CAPZA2	7	116556165	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	29730128	116556165	42582498	43	4624											
FAM71F1	84691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	128358917	128358917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	128358917	T	C	128358917	3	2	70	1	0	0	0	0	1	0	0	0	5619	1638	57	3	477	3	FAM71F1	7	128358917	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	11802752	128358917	30779746	44	4625											
NAT1	9	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	18079815	18079815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	18079815	A	T	18079815	3	4	70	1	0	0	0	0	1	0	0	0	10180	159	6	5	455	5	NAT1	8	18079815	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10		18079815	128284207	45	4626											
HOOK3	84376	broad.mit.edu;ucsc.edu	37	8	42828459	42828459	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	42828459	A	A	42828459	3	1	70	1	0	0	0	0	1	0	0	0	7291	1059	37	1	1196	1	HOOK3	8	42828459	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	24748644	42828459	103535563	46	4627											
PKHD1L1	93035	hgsc.bcm.edu;ucsc.edu	37	8	110523095	110523095	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	-	110523095	G	-	110523095	7	5	70	1	0	1	0	1	0	0	0	0	11979	1291	45	0	11767	0	PKHD1L1	8	110523095	Frame_Shift_Del	DEL	G	TCGA-AK-3451-01A-02D-1251-10	67694636	110523095	35840927	47	4628											
SLC18A3	6572	broad.mit.edu;ucsc.edu	37	10	50819157	50819157	+	Missense_Mutation	SNP	T	G	G	rs142721677	alternate_allele	TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	50819157	G	G	50819157	3	3	70	1	0	0	0	0	1	0	0	0	14440	1435	50	5	373	5	SLC18A3	10	50819157	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10		50819157	84715590	48	4629											
KIF20B	9585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	91469205	91469205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	91469205	T	G	91469205	3	3	70	1	0	0	0	0	1	0	0	0	8294	1783	62	5	348	5	KIF20B	10	91469205	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	40650048	91469205	44065542	49	4630											
AFAP1L2	84632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	116082996	116082996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	116082996	T	G	116082996	3	3	70	1	0	0	0	0	1	0	0	0	355	1464	51	5	2176	5	AFAP1L2	10	116082996	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	24613791	116082996	19451751	50	4631											
MUC2	4583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1097746	1097746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	1097746	C	T	1097746	3	4	70	1	0	0	0	0	1	0	0	0	9982	855	30	2	6973	2	MUC2	11	1097746	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10		1097746	133908770	51	4632											
TSPAN32	10077	hgsc.bcm.edu;ucsc.edu	37	11	2329985	2329985	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	2329985	T	A	2329985	3	1	70	1	0	0	0	0	1	0	0	0	16659	1580	55	5	313	5	TSPAN32	11	2329985	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	1232239	2329985	132676531	52	4633											
ZDHHC5	25921	broad.mit.edu;ucsc.edu	37	11	57440598	57440598	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	57440598	A	A	57440598	3	1	70	1	0	0	0	0	1	0	0	0	17630	709	25	4	38	4	ZDHHC5	11	57440598	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	55110613	57440598	77565918	53	4634											
PRPF19	27339	broad.mit.edu;ucsc.edu	37	11	60658678	60658678	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	60658678	A	A	60658678	3	1	70	1	0	0	0	0	1	0	0	0	12574	1294	45	2	43	2	PRPF19	11	60658678	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	3218080	60658678	74347838	54	4635											
KDM4D	55693	broad.mit.edu;hgsc.bcm.edu	37	11	94730799	94730799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	94730799	A	G	94730799	3	3	70	1	0	0	0	0	1	0	0	0	8138	130	5	3	265	3	KDM4D	11	94730799	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	34072121	94730799	40275717	55	4636											
ALKBH8	91801	hgsc.bcm.edu;ucsc.edu	37	11	107375782	107375782	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	-	107375782	T	-	107375782	7	5	70	1	0	1	0	1	0	0	0	0	533	1580	55	0	401	0	ALKBH8	11	107375782	Frame_Shift_Del	DEL	T	TCGA-AK-3451-01A-02D-1251-10	12644983	107375782	27630734	56	4637											
ABCG4	64137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119031335	119031335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	119031335	C	A	119031335	3	1	70	1	0	0	0	0	1	0	0	0	70	680	24	4	1734	4	ABCG4	11	119031335	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	11655553	119031335	15975181	57	4638											
OR8B12	219858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124413242	124413242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	124413242	G	T	124413242	3	4	70	1	0	0	0	0	1	0	0	0	11233	933	33	4	625	4	OR8B12	11	124413242	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	5381907	124413242	10593274	58	4639											
CLEC9A	283420	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10217396	10217396	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	10217396	G	C	10217396	3	2	70	1	0	0	0	0	1	0	0	0	3524	991	35	4	555	4	CLEC9A	12	10217396	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10		10217396	123634499	59	4640											
ZNF641	121274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48737147	48737147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	48737147	C	T	48737147	3	4	70	1	0	0	0	0	1	0	0	0	18069	681	24	2	394	2	ZNF641	12	48737147	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	38519751	48737147	85114748	60	4641											
MBD6	114785	broad.mit.edu;ucsc.edu	37	12	57921633	57921633	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	57921633	T	T	57921633	3	4	70	1	0	0	0	0	1	0	0	0	9355	1290	45	4	2265	4	MBD6	12	57921633	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	9184486	57921633	75930262	61	4642											
CAND1	55832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	67700071	67700071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	67700071	G	A	67700071	3	1	70	1	0	0	0	0	1	0	0	0	2617	971	34	2	2661	2	CAND1	12	67700071	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	9778438	67700071	66151824	62	4643											
DYRK2	8445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	68052356	68052356	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	68052356	A	C	68052356	3	2	70	1	0	0	0	0	1	0	0	0	4858	159	6	5	1679	5	DYRK2	12	68052356	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	352285	68052356	65799539	63	4644											
STX2	2054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	131311785	131311785	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	131311785	C	G	131311785	3	3	70	1	0	0	0	0	1	0	0	0	15357	565	20	4	926	4	STX2	12	131311785	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	63259429	131311785	2540110	64	4645											
NBEA	26960	broad.mit.edu	37	13	35738588	35738588	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	35738588	G	G	35738588	3	3	70	1	0	0	0	0	1	0	0	0	10194	43	2	3	4269	3	NBEA	13	35738588	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10		35738588	79431290	65	4646											
KIAA0564	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	42263606	42263606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	42263606	G	T	42263606	3	4	70	1	0	0	0	0	1	0	0	0	8192	1299	45	4	1750	4	KIAA0564	13	42263606	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02D-1251-10	6525018	42263606	72906272	66	4647											
RBM23	55147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23371499	23371499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	23371499	C	A	23371499	3	1	70	1	0	0	0	0	1	0	0	0	13136	796	28	4	312	4	RBM23	14	23371499	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10		23371499	83978041	67	4648											
PIAS1	8554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	68445966	68445966	+	Silent	SNP	C	C	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	68445966	C	T	68445966	2	4	70	1	0	0	0	0	0	0	0	1	11882	668	24	2		2	PIAS1	15	68445966	Silent	SNP	C	TCGA-AK-3451-01A-02D-1251-10		68445966	34085426	68	4649											
PKD1	5310	broad.mit.edu;hgsc.bcm.edu	37	16	2158399	2158399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	2158399	C	A	2158399	3	1	70	1	0	0	0	0	1	0	0	0	11970	507	18	4	6270	4	PKD1	16	2158399	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10		2158399	88196354	69	4650	53	2									
PKD1	5310	broad.mit.edu;hgsc.bcm.edu	37	16	2158400	2158400	+	Silent	SNP	C	C	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	2158400	C	A	2158400	2	1	70	1	0	0	0	0	0	0	0	1	11970	581	21	4		4	PKD1	16	2158400	Silent	SNP	C	TCGA-AK-3451-01A-02D-1251-10	1	2158400	88196353	70	4651	53	2									
OR1F1	4992	hgsc.bcm.edu;ucsc.edu	37	16	3254418	3254418	+	Missense_Mutation	SNP	C	C	A	rs61731432	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	3254418	C	A	3254418	3	1	70	1	0	0	0	0	1	0	0	0	10963	623	22	4	174	4	OR1F1	16	3254418	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	1096018	3254418	87100335	71	4652											
KARS	3735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	75678248	75678248	+	Silent	SNP	G	G	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	75678248	G	A	75678248	2	1	70	1	0	0	0	0	0	0	0	1	7987	1020	36	2		2	KARS	16	75678248	Silent	SNP	G	TCGA-AK-3451-01A-02D-1251-10	72423830	75678248	14676505	72	4653											
CHD3	1107	broad.mit.edu;ucsc.edu	37	17	7805978	7805978	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	7805978	A	A	7805978	4	1	70	1	0	0	0	0	0	1	0	0	3328	489	17	4	3666	4	CHD3	17	7805978	Nonsense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10		7805978	73389232	73	4654											
ABHD15	116236	broad.mit.edu	37	17	27893483	27893483	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	27893483	G	G	27893483	3	3	70	1	0	0	0	0	1	0	0	0	81	623	22	4	912	4	ABHD15	17	27893483	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	20087505	27893483	53301727	74	4655											
CCDC40	55036	broad.mit.edu	37	17	78039368	78039368	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	78039368	G	G	78039368	3	3	70	1	0	0	0	0	1	0	0	0	2814	652	23	4	1563	4	CCDC40	17	78039368	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10	50145885	78039368	3155842	75	4656											
CCDC40	55036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78058619	78058619	+	Silent	SNP	C	C	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	78058619	C	T	78058619	2	4	70	1	0	0	0	0	0	0	0	1	2814	535	19	1		1	CCDC40	17	78058619	Silent	SNP	C	TCGA-AK-3451-01A-02D-1251-10	19251	78058619	3136591	76	4657											
RNF213	57674	broad.mit.edu;hgsc.bcm.edu	37	17	78337077	78337077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	78337077	A	C	78337077	3	2	70	1	0	0	0	0	1	0	0	0	13490	246	9	5	12004	5	RNF213	17	78337077	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	278458	78337077	2858133	77	4658	54	2									
RNF213	57674	broad.mit.edu	37	17	78337081	78337081	+	Silent	SNP	C	G	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	78337081	G	G	78337081	2	3	70	1	0	0	0	0	0	0	0	1	13490	610	22	4		4	RNF213	17	78337081	Silent	SNP	C	TCGA-AK-3451-01A-02D-1251-10	4	78337081	2858129	78	4659	54	2									
PTPRM	5797	broad.mit.edu;ucsc.edu	37	18	8113697	8113697	+	Silent	SNP	T	A	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	8113697	A	A	8113697	2	1	70	1	0	0	0	0	0	0	0	1	12819	1538	54	5		5	PTPRM	18	8113697	Silent	SNP	T	TCGA-AK-3451-01A-02D-1251-10		8113697	69963551	79	4660											
CDH19	28513	hgsc.bcm.edu;ucsc.edu	37	18	64211271	64211273	+	In_Frame_Del	DEL	GGG	GGG	-	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	GGG	GGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	-	64211273	GGG	-	64211271	7	5	70	1	0	1	0	1	0	0	0	0	3106	1348	47	0	1191	0	CDH19	18	64211271	In_Frame_Del	DEL	GGG	TCGA-AK-3451-01A-02D-1251-10	56097574	64211271	13865977	80	4661											
RINL	126432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39362295	39362295	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	39362295	T	G	39362295	3	3	70	1	0	0	0	0	1	0	0	0	13388	1783	62	5	1285	5	RINL	19	39362295	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10		39362295	19766688	81	4662											
ZNF224	7767	broad.mit.edu;hgsc.bcm.edu	37	19	44610924	44610924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	44610924	A	G	44610924	3	3	70	1	0	0	0	0	1	0	0	0	17790	449	16	3	625	3	ZNF224	19	44610924	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	5248629	44610924	14518059	82	4663											
ZNF235	9310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44792129	44792129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	44792129	A	T	44792129	3	4	70	1	0	0	0	0	1	0	0	0	17800	449	16	5	761	5	ZNF235	19	44792129	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10	181205	44792129	14336854	83	4664											
ERCC1	2067	hgsc.bcm.edu	37	19	45916986	45916986	+	Silent	SNP	G	G	T	rs3212976	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	T	45916986	G	T	45916986	2	4	70	1	0	0	0	0	0	0	0	1	5214	1048	37	4		4	ERCC1	19	45916986	Silent	SNP	G	TCGA-AK-3451-01A-02D-1251-10	1124857	45916986	13211997	84	4665											
RALGAPA2	57186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	20493446	20493446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	C	20493446	A	C	20493446	3	2	70	1	0	0	0	0	1	0	0	0	13027	98	4	5	1086	5	RALGAPA2	20	20493446	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10		20493446	42532074	85	4666											
ADAMTS1	9510	hgsc.bcm.edu;ucsc.edu	37	21	28213405	28213407	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	-	28213407	CAT	-	28213405	7	5	70	1	0	1	0	1	0	0	0	0	255	594	21	0	1637	0	ADAMTS1	21	28213405	In_Frame_Del	DEL	CAT	TCGA-AK-3451-01A-02D-1251-10		28213405	19916490	86	4667											
EWSR1	2130	broad.mit.edu;ucsc.edu	37	22	29668371	29668371	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	29668371	G	G	29668371	3	3	70	1	0	0	0	0	1	0	0	0	5298	391	14	3	63	3	EWSR1	22	29668371	Missense_Mutation	SNP	A	TCGA-AK-3451-01A-02D-1251-10		29668371	21636195	87	4668											
NEFH	4744	hgsc.bcm.edu	37	22	29885580	29885581	+	In_Frame_Ins	INS	-	-	AGGCCAAGTCCCCTGAGA	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	AGGCCAAGTCCCCTGAGA	29885581	-	AGGCCAAGTCCCCTGAGA	29885580	7	5	70	1	0	1	1	0	0	0	0	0	10321	247	9	0	1965	0	NEFH	22	29885580	In_Frame_Ins	INS	-	TCGA-AK-3451-01A-02D-1251-10	217209	29885580	21418986	88	4669											
SYTL5	94122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	37984722	37984722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	A	37984722	C	A	37984722	3	1	70	1	0	0	0	0	1	0	0	0	15498	477	17	4	2141	4	SYTL5	23	37984722	Missense_Mutation	SNP	C	TCGA-AK-3451-01A-02D-1251-10		37984722	117285838	89	4670											
MED14	9282	broad.mit.edu;hgsc.bcm.edu	37	X	40568603	40568603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3451-01A-02D-1251-10	TCGA-AK-3451-10A-01D-1251-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5e77e3d0-35a7-4555-a0b4-236630d71f61	f9333599-d814-44d9-a58f-9c6fb78b15d1	G	40568603	T	G	40568603	3	3	70	1	0	0	0	0	1	0	0	0	9439	1841	64	5	3170	5	MED14	23	40568603	Missense_Mutation	SNP	T	TCGA-AK-3451-01A-02D-1251-10	2583881	40568603	114701957	90	4671											
VHL	7428	hgsc.bcm.edu	37	3	10183646	10183646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3451-01A-02W-1244-10	TCGA-AK-3451-10A-01W-1244-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	5a465db8-051b-4d67-960b-5adc49b55fd9	a3aaf8f7-1dee-45f5-81da-6fceecc116c8	A	10183646	G	A	10183646	3	1	71	1	0	0	0	0	1	0	0	0	17174	1116	39	1	117	1	VHL	3	10183646	Missense_Mutation	SNP	G	TCGA-AK-3451-01A-02W-1244-10		10183646	187838784	1	4672			1	11		2	2	90	N	G	5.749937e-06
VHL	7428	hgsc.bcm.edu	37	3	10183735	10183735	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AK-3451-01A-02W-1244-10	TCGA-AK-3451-10A-01W-1244-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	5a465db8-051b-4d67-960b-5adc49b55fd9	a3aaf8f7-1dee-45f5-81da-6fceecc116c8	-	10183735	G	-	10183735	7	5	71	1	0	1	0	1	0	0	0	0	17174	1074	38	0	206	0	VHL	3	10183735	Frame_Shift_Del	DEL	G	TCGA-AK-3451-01A-02W-1244-10	89	10183735	187838695	2	4673			1	11		2	2	90	N	G	5.749937e-06
ZCCHC17	51538	broad.mit.edu	37	1	31836952	31836952	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	31836952	G	A	31836952	3	1	72	1	0	0	0	0	1	0	0	0	17597	1203	42	2	664	2	ZCCHC17	1	31836952	Missense_Mutation	SNP	G	TCGA-AK-3453-01A-01D-0966-08		31836952	217413669	1	4674											
HRNR	388697	broad.mit.edu	37	1	152191466	152191466	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	152191466	C	T	152191466	3	4	72	1	0	0	0	0	1	0	0	0	7366	768	27	1	5917	1	HRNR	1	152191466	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08	120354514	152191466	97059155	2	4675											
WDR26	80232	broad.mit.edu	37	1	224592221	224592221	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	224592221	C	T	224592221	3	4	72	1	0	0	0	0	1	0	0	0	17295	536	19	1	803	1	WDR26	1	224592221	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08	72400755	224592221	24658400	3	4676											
IRF2BP2	359948	broad.mit.edu	37	1	234743195	234743197	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	-	234743197	TCC	-	234743195	7	5	72	1	0	1	0	1	0	0	0	0	7837	1654	58	0	315	0	IRF2BP2	1	234743195	In_Frame_Del	DEL	TCC	TCGA-AK-3453-01A-01D-0966-08	10150974	234743195	14507426	4	4677											
ARHGAP25	9938	broad.mit.edu	37	2	69034497	69034497	+	Missense_Mutation	SNP	T	T	C			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	C	69034497	T	C	69034497	3	2	72	1	0	0	0	0	1	0	0	0	874	1725	60	3	617	3	ARHGAP25	2	69034497	Missense_Mutation	SNP	T	TCGA-AK-3453-01A-01D-0966-08		69034497	174164876	5	4678											
AFF3	3899	broad.mit.edu	37	2	100199272	100199272	+	Silent	SNP	G	G	A	rs148546971		TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	100199272	G	A	100199272	2	1	72	1	0	0	0	0	0	0	0	1	358	1074	38	1		1	AFF3	2	100199272	Silent	SNP	G	TCGA-AK-3453-01A-01D-0966-08	31164775	100199272	143000101	6	4679											
PAX3	5077	broad.mit.edu	37	2	223066658	223066658	+	Silent	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	223066658	C	T	223066658	2	4	72	1	0	0	0	0	0	0	0	1	11487	796	28	2		2	PAX3	2	223066658	Silent	SNP	C	TCGA-AK-3453-01A-01D-0966-08	122867386	223066658	20132715	7	4680											
COL8A1	1295	broad.mit.edu	37	3	99514149	99514149	+	Silent	SNP	T	T	G	rs144636435		TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	G	99514149	T	G	99514149	2	3	72	1	0	0	0	0	0	0	0	1	3707	1683	59	5		5	COL8A1	3	99514149	Silent	SNP	T	TCGA-AK-3453-01A-01D-0966-08		99514149	98508281	8	4681											
OSBPL11	114885	broad.mit.edu	37	3	125271258	125271258	+	Missense_Mutation	SNP	C	C	A			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	125271258	C	A	125271258	3	1	72	1	0	0	0	0	1	0	0	0	11283	797	28	4	842	4	OSBPL11	3	125271258	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08	25757109	125271258	72751172	9	4682											
ARRDC3	57561	broad.mit.edu	37	5	90667241	90667243	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	-	90667243	ATC	-	90667241	7	5	72	1	0	1	0	1	0	0	0	0	984	446	16	0	27	0	ARRDC3	5	90667241	In_Frame_Del	DEL	ATC	TCGA-AK-3453-01A-01D-0966-08		90667241	90248019	10	4683											
PCDHA7	56141	broad.mit.edu	37	5	140215597	140215597	+	Silent	SNP	G	G	A			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	140215597	G	A	140215597	2	1	72	1	0	0	0	0	0	0	0	1	11536	1074	38	1		1	PCDHA7	5	140215597	Silent	SNP	G	TCGA-AK-3453-01A-01D-0966-08	49548356	140215597	40699663	11	4684											
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	140553994	G	T	140553994	2	4	72	1	0	0	0	0	0	0	0	1	11554	1132	40	4		4	PCDHB7	5	140553994	Silent	SNP	G	TCGA-AK-3453-01A-01D-0966-08	338397	140553994	40361266	12	4685											
SCAND3	114821	broad.mit.edu	37	6	28541173	28541173	+	Silent	SNP	G	G	A			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	28541173	G	A	28541173	2	1	72	1	0	0	0	0	0	0	0	1	13889	1335	47	2		2	SCAND3	6	28541173	Silent	SNP	G	TCGA-AK-3453-01A-01D-0966-08		28541173	142573894	13	4686											
RXRB	6257	broad.mit.edu	37	6	33166123	33166123	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	33166123	C	T	33166123	3	4	72	1	0	0	0	0	1	0	0	0	13777	739	26	2	1031	2	RXRB	6	33166123	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08	4624950	33166123	137948944	14	4687											
FGD2	221472	broad.mit.edu	37	6	36982762	36982762	+	Missense_Mutation	SNP	T	T	G			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	G	36982762	T	G	36982762	3	3	72	1	0	0	0	0	1	0	0	0	5840	1667	58	5	1007	5	FGD2	6	36982762	Missense_Mutation	SNP	T	TCGA-AK-3453-01A-01D-0966-08	3816639	36982762	134132305	15	4688											
PEX6	5190	broad.mit.edu	37	6	42946220	42946220	+	Silent	SNP	C	C	A			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	42946220	C	A	42946220	2	1	72	1	0	0	0	0	0	0	0	1	11757	465	17	4		4	PEX6	6	42946220	Silent	SNP	C	TCGA-AK-3453-01A-01D-0966-08	5963458	42946220	128168847	16	4689											
CYB5R4	51167	broad.mit.edu	37	6	84569562	84569562	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	-	84569562	G	-	84569562	7	5	72	1	0	1	0	1	0	0	0	0	4131	1116	39	0	63	0	CYB5R4	6	84569562	Frame_Shift_Del	DEL	G	TCGA-AK-3453-01A-01D-0966-08	41623342	84569562	86545505	17	4690											
CA13	377677	broad.mit.edu	37	8	86163153	86163153	+	Silent	SNP	A	A	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	86163153	A	T	86163153	2	4	72	1	0	0	0	0	0	0	0	1	2516	175	7	5		5	CA13	8	86163153	Silent	SNP	A	TCGA-AK-3453-01A-01D-0966-08		86163153	60200869	18	4691											
SUV420H1	51111	broad.mit.edu	37	11	67925230	67925230	+	Missense_Mutation	SNP	T	T	C			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	C	67925230	T	C	67925230	3	2	72	1	0	0	0	0	1	0	0	0	15426	1512	53	3	78	3	SUV420H1	11	67925230	Missense_Mutation	SNP	T	TCGA-AK-3453-01A-01D-0966-08		67925230	67081286	19	4692											
MMP3	4314	broad.mit.edu	37	11	102713276	102713276	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	102713276	C	T	102713276	3	4	72	1	0	0	0	0	1	0	0	0	9673	710	25	2	1080	2	MMP3	11	102713276	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08	34788046	102713276	32293240	20	4693											
ETV6	2120	broad.mit.edu	37	12	12022525	12022525	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	12022525	C	T	12022525	3	4	72	1	0	0	0	0	1	0	0	0	5285	652	23	1	649	1	ETV6	12	12022525	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08		12022525	121829370	21	4694											
TMOD2	29767	broad.mit.edu	37	15	52074920	52074920	+	Silent	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	52074920	C	T	52074920	2	4	72	1	0	0	0	0	0	0	0	1	16246	477	17	2		2	TMOD2	15	52074920	Silent	SNP	C	TCGA-AK-3453-01A-01D-0966-08		52074920	50456472	22	4695											
MESDC2	23184	broad.mit.edu	37	15	81282120	81282120	+	Missense_Mutation	SNP	T	T	C			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	C	81282120	T	C	81282120	3	2	72	1	0	0	0	0	1	0	0	0	9488	1579	55	3	703	3	MESDC2	15	81282120	Missense_Mutation	SNP	T	TCGA-AK-3453-01A-01D-0966-08	29207200	81282120	21249272	23	4696											
MKL2	57496	broad.mit.edu	37	16	14345845	14345845	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	14345845	C	T	14345845	3	4	72	1	0	0	0	0	1	0	0	0	9609	855	30	2	2426	2	MKL2	16	14345845	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08		14345845	76008908	24	4697											
ACAP1	9744	broad.mit.edu	37	17	7253450	7253450	+	Missense_Mutation	SNP	G	G	C			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	C	7253450	G	C	7253450	3	2	72	1	0	0	0	0	1	0	0	0	118	1087	38	4	2044	4	ACAP1	17	7253450	Missense_Mutation	SNP	G	TCGA-AK-3453-01A-01D-0966-08		7253450	73941760	25	4698											
MYH3	4621	broad.mit.edu	37	17	10543475	10543475	+	Silent	SNP	G	G	A			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	10543475	G	A	10543475	2	1	72	1	0	0	0	0	0	0	0	1	10043	1161	41	2		2	MYH3	17	10543475	Silent	SNP	G	TCGA-AK-3453-01A-01D-0966-08	3290025	10543475	70651735	26	4699											
ABCA9	10350	broad.mit.edu	37	17	67013849	67013849	+	Missense_Mutation	SNP	C	C	A			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	67013849	C	A	67013849	3	1	72	1	0	0	0	0	1	0	0	0	39	739	26	4	2101	4	ABCA9	17	67013849	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08	56470374	67013849	14181361	27	4700											
OSBPL1A	114876	broad.mit.edu	37	18	21898607	21898607	+	Silent	SNP	G	G	C			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	C	21898607	G	C	21898607	2	2	72	1	0	0	0	0	0	0	0	1	11284	1277	45	4		4	OSBPL1A	18	21898607	Silent	SNP	G	TCGA-AK-3453-01A-01D-0966-08		21898607	56178641	28	4701											
TNFSF9	8744	broad.mit.edu	37	19	6534882	6534882	+	Silent	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	6534882	C	T	6534882	2	4	72	1	0	0	0	0	0	0	0	1	16324	639	23	1		1	TNFSF9	19	6534882	Silent	SNP	C	TCGA-AK-3453-01A-01D-0966-08		6534882	52594101	29	4702											
ECSIT	51295	broad.mit.edu	37	19	11617057	11617057	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	11617057	G	A	11617057	3	1	72	1	0	0	0	0	1	0	0	0	4902	1232	43	2	61	2	ECSIT	19	11617057	Missense_Mutation	SNP	G	TCGA-AK-3453-01A-01D-0966-08	5082175	11617057	47511926	30	4703											
PGLYRP2	114770	broad.mit.edu	37	19	15586419	15586419	+	Silent	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	15586419	C	T	15586419	2	4	72	1	0	0	0	0	0	0	0	1	11801	564	20	2		2	PGLYRP2	19	15586419	Silent	SNP	C	TCGA-AK-3453-01A-01D-0966-08	3969362	15586419	43542564	31	4704											
CATSPERG	57828	broad.mit.edu	37	19	38853184	38853184	+	Missense_Mutation	SNP	G	G	C			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	C	38853184	G	C	38853184	3	2	72	1	0	0	0	0	1	0	0	0	2694	1232	43	4	2396	4	CATSPERG	19	38853184	Missense_Mutation	SNP	G	TCGA-AK-3453-01A-01D-0966-08	23266765	38853184	20275799	32	4705											
CPXM1	56265	broad.mit.edu	37	20	2775056	2775056	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	T	2775056	C	T	2775056	3	4	72	1	0	0	0	0	1	0	0	0	3839	536	19	1	223	1	CPXM1	20	2775056	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08		2775056	60250464	33	4706											
RLIM	51132	broad.mit.edu	37	X	73812620	73812620	+	Missense_Mutation	SNP	T	T	G			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	G	73812620	T	G	73812620	3	3	72	1	0	0	0	0	1	0	0	0	13403	1783	62	5	1348	5	RLIM	23	73812620	Missense_Mutation	SNP	T	TCGA-AK-3453-01A-01D-0966-08		73812620	81457940	34	4707											
NXF5	55998	broad.mit.edu	37	X	101095848	101095848	+	Missense_Mutation	SNP	C	C	A			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	A	101095848	C	A	101095848	3	1	72	1	0	0	0	0	1	0	0	0	10793	710	25	4	629	4	NXF5	23	101095848	Missense_Mutation	SNP	C	TCGA-AK-3453-01A-01D-0966-08	27283228	101095848	54174712	35	4708											
DKC1	1736	broad.mit.edu	37	X	153994193	153994193	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AK-3453-01A-01D-0966-08	TCGA-AK-3453-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e9926cc0-ce09-449c-a96e-082be656a1d7	c5f57cc9-32dc-41f5-b43e-8999e241adc4	-	153994193	G	-	153994193	7	5	72	1	0	1	0	1	0	0	0	0	4544	962	34	0	197	0	DKC1	23	153994193	Frame_Shift_Del	DEL	G	TCGA-AK-3453-01A-01D-0966-08	52898345	153994193	1276367	36	4709											
TMEM51	55092	hgsc.bcm.edu	37	1	15546034	15546034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	15546034	C	T	15546034	3	4	73	1	0	0	0	0	1	0	0	0	16189	623	22	2	563	2	TMEM51	1	15546034	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10		15546034	233704587	1	4710											
ATP13A2	23400	hgsc.bcm.edu	37	1	17331235	17331235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	17331235	C	A	17331235	3	1	73	1	0	0	0	0	1	0	0	0	1124	680	24	4	3449	4	ATP13A2	1	17331235	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10	1785201	17331235	231919386	2	4711											
THRAP3	9967	hgsc.bcm.edu	37	1	36755272	36755272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	36755272	A	G	36755272	3	3	73	1	0	0	0	0	1	0	0	0	15886	14	1	3	1662	3	THRAP3	1	36755272	Missense_Mutation	SNP	A	TCGA-AK-3454-01A-02D-1361-10	19424037	36755272	212495349	3	4712											
KIAA0754	643314	hgsc.bcm.edu;ucsc.edu	37	1	39877885	39877885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	39877885	G	A	39877885	3	1	73	1	0	0	0	0	1	0	0	0	8199	1261	44	2	1950	2	KIAA0754	1	39877885	Missense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10	3122613	39877885	209372736	4	4713											
ORC1L	0	hgsc.bcm.edu	37	1	52849148	52849148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	52849148	C	T	52849148	3	4	73	1	0	0	0	0	1	0	0	0	11268	710	25	2	648	2	ORC1L	1	52849148	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10	12971263	52849148	196401473	5	4714											
C1orf52	148423	hgsc.bcm.edu;ucsc.edu	37	1	85724326	85724326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	85724326	G	A	85724326	3	1	73	1	0	0	0	0	1	0	0	0	2046	1000	35	2	200	2	C1orf52	1	85724326	Missense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10	32875178	85724326	163526295	6	4715											
PHGDH	26227	hgsc.bcm.edu	37	1	120277939	120277939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	120277939	T	G	120277939	3	3	73	1	0	0	0	0	1	0	0	0	11848	1841	64	5	691	5	PHGDH	1	120277939	Missense_Mutation	SNP	T	TCGA-AK-3454-01A-02D-1361-10	34553613	120277939	128972682	7	4716											
ARV1	64801	hgsc.bcm.edu	37	1	231131724	231131724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	231131724	A	G	231131724	3	3	73	1	0	0	0	0	1	0	0	0	1002	101	4	3	681	3	ARV1	1	231131724	Missense_Mutation	SNP	A	TCGA-AK-3454-01A-02D-1361-10	110853785	231131724	18118897	8	4717											
STON1	11037	hgsc.bcm.edu;ucsc.edu	37	2	48807891	48807891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	48807891	T	C	48807891	3	2	73	1	0	0	0	0	1	0	0	0	15328	1580	55	3	121	3	STON1	2	48807891	Missense_Mutation	SNP	T	TCGA-AK-3454-01A-02D-1361-10		48807891	194391482	9	4718											
MRPL53	116540	hgsc.bcm.edu	37	2	74699716	74699716	+	Silent	SNP	C	C	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	74699716	C	T	74699716	2	4	73	1	0	0	0	0	0	0	0	1	9824	912	32	2		2	MRPL53	2	74699716	Silent	SNP	C	TCGA-AK-3454-01A-02D-1361-10	25891825	74699716	168499657	10	4719											
TMEM131	23505	hgsc.bcm.edu;ucsc.edu	37	2	98429106	98429106	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	98429106	A	T	98429106	3	4	73	1	0	0	0	0	1	0	0	0	16056	101	4	5	4031	5	TMEM131	2	98429106	Missense_Mutation	SNP	A	TCGA-AK-3454-01A-02D-1361-10	23729390	98429106	144770267	11	4720											
CFC1B	653275	hgsc.bcm.edu	37	2	131279423	131279423	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	131279423	A	C	131279423	3	2	73	1	0	0	0	0	1	0	0	0	3282	130	5	5	67	5	CFC1B	2	131279423	Missense_Mutation	SNP	A	TCGA-AK-3454-01A-02D-1361-10	32850317	131279423	111919950	12	4721											
NEB	4703	hgsc.bcm.edu;ucsc.edu	37	2	152347020	152347020	+	Missense_Mutation	SNP	C	C	A	rs139333406	by1000genomes;alternate_allele	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	152347020	C	A	152347020	3	1	73	1	0	0	0	0	1	0	0	0	10309	768	27	4	426	4	NEB	2	152347020	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10	21067597	152347020	90852353	13	4722											
TBR1	10716	hgsc.bcm.edu	37	2	162273245	162273245	+	Silent	SNP	T	T	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	162273245	T	G	162273245	2	3	73	1	0	0	0	0	0	0	0	1	15659	1538	54	5		5	TBR1	2	162273245	Silent	SNP	T	TCGA-AK-3454-01A-02D-1361-10	9926225	162273245	80926128	14	4723											
SOX14	8403	hgsc.bcm.edu	37	3	137483860	137483860	+	Silent	SNP	A	A	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	137483860	A	T	137483860	2	4	73	1	0	0	0	0	0	0	0	1	14958	262	10	5		5	SOX14	3	137483860	Silent	SNP	A	TCGA-AK-3454-01A-02D-1361-10		137483860	60538570	15	4724											
OTOP1	133060	hgsc.bcm.edu	37	4	4190683	4190683	+	Silent	SNP	G	G	A	rs116072164	byfrequency	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	4190683	G	A	4190683	2	1	73	1	0	0	0	0	0	0	0	1	11312	987	35	2		2	OTOP1	4	4190683	Silent	SNP	G	TCGA-AK-3454-01A-02D-1361-10		4190683	186963593	16	4725											
UGT3A1	133688	hgsc.bcm.edu	37	5	35965615	35965615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	35965615	T	C	35965615	3	2	73	1	0	0	0	0	1	0	0	0	16975	1464	51	3	953	3	UGT3A1	5	35965615	Missense_Mutation	SNP	T	TCGA-AK-3454-01A-02D-1361-10		35965615	144949645	17	4726											
NIPBL	25836	hgsc.bcm.edu;ucsc.edu	37	5	37064853	37064853	+	Silent	SNP	A	A	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	37064853	A	G	37064853	2	3	73	1	0	0	0	0	0	0	0	1	10435	40	2	3		3	NIPBL	5	37064853	Silent	SNP	A	TCGA-AK-3454-01A-02D-1361-10	1099238	37064853	143850407	18	4727											
PPP2CA	5515	hgsc.bcm.edu;ucsc.edu	37	5	133533531	133533531	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	133533531	G	A	133533531	4	1	73	1	0	0	0	0	0	1	0	0	12390	1328	46	2	71	2	PPP2CA	5	133533531	Nonsense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10	96468678	133533531	47381729	19	4728											
HMP19	51617	hgsc.bcm.edu;ucsc.edu	37	5	173534370	173534370	+	Silent	SNP	C	C	T	rs11557147	alternate_allele	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	173534370	C	T	173534370	2	4	73	1	0	0	0	0	0	0	0	1	7252	581	21	2		2	HMP19	5	173534370	Silent	SNP	C	TCGA-AK-3454-01A-02D-1361-10	40000839	173534370	7380890	20	4729											
BTNL3	10917	hgsc.bcm.edu;ucsc.edu	37	5	180429757	180429759	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	GAT	GAT	GAT	-	GAT	GAT	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	-	180429759	GAT	-	180429757	7	5	73	1	0	1	0	1	0	0	0	0	1568	1161	41	0	773	0	BTNL3	5	180429757	In_Frame_Del	DEL	GAT	TCGA-AK-3454-01A-02D-1361-10	6895387	180429757	485503	21	4730											
TXNDC5	81567	hgsc.bcm.edu;ucsc.edu	37	6	7904905	7904905	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	7904905	T	G	7904905	3	3	73	1	0	0	0	0	1	0	0	0	16811	1490	52	5	1019	5	TXNDC5	6	7904905	Missense_Mutation	SNP	T	TCGA-AK-3454-01A-02D-1361-10		7904905	163210162	22	4731											
TFEB	7942	hgsc.bcm.edu;ucsc.edu	37	6	41655521	41655521	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	41655521	C	A	41655521	4	1	73	1	0	0	0	0	0	1	0	0	15813	864	30	4	749	4	TFEB	6	41655521	Nonsense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10	33750616	41655521	129459546	23	4732											
SLC35B2	347734	hgsc.bcm.edu;ucsc.edu	37	6	44224154	44224154	+	Silent	SNP	C	C	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	44224154	C	T	44224154	2	4	73	1	0	0	0	0	0	0	0	1	14589	755	27	1		1	SLC35B2	6	44224154	Silent	SNP	C	TCGA-AK-3454-01A-02D-1361-10	2568633	44224154	126890913	24	4733											
EYS	346007	hgsc.bcm.edu	37	6	64776299	64776299	+	Silent	SNP	A	A	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	64776299	A	G	64776299	2	3	73	1	0	0	0	0	0	0	0	1	5334	291	11	3		3	EYS	6	64776299	Silent	SNP	A	TCGA-AK-3454-01A-02D-1361-10	20552145	64776299	106338768	25	4734											
BAI3	577	hgsc.bcm.edu;ucsc.edu	37	6	69943308	69943308	+	Silent	SNP	A	A	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	69943308	A	T	69943308	2	4	73	1	0	0	0	0	0	0	0	1	1300	434	15	5		5	BAI3	6	69943308	Silent	SNP	A	TCGA-AK-3454-01A-02D-1361-10	5167009	69943308	101171759	26	4735											
PHKG1	5260	hgsc.bcm.edu	37	7	56155465	56155465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	56155465	C	T	56155465	3	4	73	1	0	0	0	0	1	0	0	0	11853	536	19	1	1107	1	PHKG1	7	56155465	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10		56155465	102983198	27	4736											
MLXIPL	51085	hgsc.bcm.edu	37	7	73020298	73020298	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	73020298	G	C	73020298	3	2	73	1	0	0	0	0	1	0	0	0	9644	1368	48	4	1844	4	MLXIPL	7	73020298	Missense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10	16864833	73020298	86118365	28	4737											
ZNF596	169270	hgsc.bcm.edu;ucsc.edu	37	8	195934	195934	+	Missense_Mutation	SNP	C	C	T	rs188238096	by1000genomes	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	195934	C	T	195934	3	4	73	1	0	0	0	0	1	0	0	0	18038	478	17	2	1105	2	ZNF596	8	195934	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10		195934	146168088	29	4738											
EGR3	1960	hgsc.bcm.edu	37	8	22550417	22550417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	22550417	C	T	22550417	3	4	73	1	0	0	0	0	1	0	0	0	4975	797	28	2	1130	2	EGR3	8	22550417	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10	22354483	22550417	123813605	30	4739											
RBPMS	11030	hgsc.bcm.edu;ucsc.edu	37	8	30361883	30361883	+	Silent	SNP	A	A	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	30361883	A	G	30361883	2	3	73	1	0	0	0	0	0	0	0	1	13176	40	2	3		3	RBPMS	8	30361883	Silent	SNP	A	TCGA-AK-3454-01A-02D-1361-10	7811466	30361883	116002139	31	4740											
BICD2	23299	hgsc.bcm.edu	37	9	95481408	95481408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	95481408	T	C	95481408	3	2	73	1	0	0	0	0	1	0	0	0	1429	1850	64	3	1070	3	BICD2	9	95481408	Missense_Mutation	SNP	T	TCGA-AK-3454-01A-02D-1361-10		95481408	45732023	32	4741											
ASS1	445	hgsc.bcm.edu;ucsc.edu	37	9	133339550	133339550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	133339550	T	C	133339550	3	2	73	1	0	0	0	0	1	0	0	0	1061	1406	49	3	430	3	ASS1	9	133339550	Missense_Mutation	SNP	T	TCGA-AK-3454-01A-02D-1361-10	37858142	133339550	7873881	33	4742											
HK1	3098	hgsc.bcm.edu	37	10	71146158	71146158	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	71146158	C	G	71146158	3	3	73	1	0	0	0	0	1	0	0	0	7197	768	27	4	2147	4	HK1	10	71146158	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10		71146158	64388589	34	4743											
SLC22A6	9356	hgsc.bcm.edu;ucsc.edu	37	11	62751128	62751128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	62751128	A	G	62751128	3	3	73	1	0	0	0	0	1	0	0	0	14471	188	7	3	1214	3	SLC22A6	11	62751128	Missense_Mutation	SNP	A	TCGA-AK-3454-01A-02D-1361-10		62751128	72255388	35	4744											
PTPN6	5777	hgsc.bcm.edu	37	12	7061265	7061265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	7061265	G	A	7061265	3	1	73	1	0	0	0	0	1	0	0	0	12805	1261	44	2	279	2	PTPN6	12	7061265	Missense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10		7061265	126790630	36	4745											
PARP4	143	hgsc.bcm.edu	37	13	25044068	25044068	+	Silent	SNP	G	G	A	rs72627334		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	25044068	G	A	25044068	2	1	73	1	0	0	0	0	0	0	0	1	11470	1049	37	1		1	PARP4	13	25044068	Silent	SNP	G	TCGA-AK-3454-01A-02D-1361-10		25044068	90125810	37	4746											
PCNX	22990	hgsc.bcm.edu;ucsc.edu	37	14	71444859	71444859	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	71444859	C	G	71444859	3	3	73	1	0	0	0	0	1	0	0	0	11598	913	32	4	1827	4	PCNX	14	71444859	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10		71444859	35904681	38	4747											
WARS	7453	hgsc.bcm.edu	37	14	100801317	100801317	+	Silent	SNP	A	A	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	100801317	A	C	100801317	2	2	73	1	0	0	0	0	0	0	0	1	17261	233	9	5		5	WARS	14	100801317	Silent	SNP	A	TCGA-AK-3454-01A-02D-1361-10	29356458	100801317	6548223	39	4748											
AHNAK2	113146	hgsc.bcm.edu	37	14	105415748	105415748	+	Missense_Mutation	SNP	G	G	A	rs118171013	byfrequency;by1000genomes	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	105415748	G	A	105415748	3	1	73	1	0	0	0	0	1	0	0	0	415	1203	42	2	11351	2	AHNAK2	14	105415748	Missense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10	4614431	105415748	1933792	40	4749											
ANPEP	290	hgsc.bcm.edu	37	15	90342493	90342493	+	Silent	SNP	G	G	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	90342493	G	C	90342493	2	2	73	1	0	0	0	0	0	0	0	1	710	1335	47	4		4	ANPEP	15	90342493	Silent	SNP	G	TCGA-AK-3454-01A-02D-1361-10		90342493	12188899	41	4750											
ACSM2B	348158	hgsc.bcm.edu	37	16	20570686	20570686	+	Silent	SNP	A	A	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	20570686	A	G	20570686	2	3	73	1	0	0	0	0	0	0	0	1	184	156	6	3		3	ACSM2B	16	20570686	Silent	SNP	A	TCGA-AK-3454-01A-02D-1361-10		20570686	69784067	42	4751											
WWP2	11060	hgsc.bcm.edu	37	16	69964089	69964089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	69964089	G	C	69964089	3	2	73	1	0	0	0	0	1	0	0	0	17428	1232	43	4	1423	4	WWP2	16	69964089	Missense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10	49393403	69964089	20390664	43	4752											
ITGAE	3682	hgsc.bcm.edu;ucsc.edu	37	17	3663516	3663516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	3663516	T	C	3663516	3	2	73	1	0	0	0	0	1	0	0	0	7892	1821	63	3	2975	3	ITGAE	17	3663516	Missense_Mutation	SNP	T	TCGA-AK-3454-01A-02D-1361-10		3663516	77531694	44	4753											
EIF5A	1984	hgsc.bcm.edu;ucsc.edu	37	17	7213099	7213099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	7213099	G	T	7213099	3	4	73	1	0	0	0	0	1	0	0	0	5043	1348	47	4	241	4	EIF5A	17	7213099	Missense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10	3549583	7213099	73982111	45	4754											
KDM6B	23135	hgsc.bcm.edu	37	17	7753474	7753474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	7753474	C	A	7753474	3	1	73	1	0	0	0	0	1	0	0	0	8145	680	24	4	3690	4	KDM6B	17	7753474	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10	540375	7753474	73441736	46	4755											
SSH2	85464	hgsc.bcm.edu;ucsc.edu	37	17	28022502	28022502	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	28022502	A	T	28022502	3	4	73	1	0	0	0	0	1	0	0	0	15197	304	11	5	4068	5	SSH2	17	28022502	Missense_Mutation	SNP	A	TCGA-AK-3454-01A-02D-1361-10	20269028	28022502	53172708	47	4756											
C17orf82	388407	hgsc.bcm.edu	37	17	59489427	59489427	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	C	59489427	A	C	59489427	3	2	73	1	0	0	0	0	1	0	0	0	1889	188	7	5	93	5	C17orf82	17	59489427	Missense_Mutation	SNP	A	TCGA-AK-3454-01A-02D-1361-10	31466925	59489427	21705783	48	4757											
ZNF121	7675	hgsc.bcm.edu;ucsc.edu	37	19	9676687	9676687	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	9676687	A	T	9676687	3	4	73	1	0	0	0	0	1	0	0	0	17731	420	15	5	74	5	ZNF121	19	9676687	Missense_Mutation	SNP	A	TCGA-AK-3454-01A-02D-1361-10		9676687	49452296	49	4758											
LPPR2	64748	hgsc.bcm.edu	37	19	11473235	11473235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	11473235	A	G	11473235	3	3	73	1	0	0	0	0	1	0	0	0	8932	14	1	3	728	3	LPPR2	19	11473235	Missense_Mutation	SNP	A	TCGA-AK-3454-01A-02D-1361-10	1796548	11473235	47655748	50	4759											
KLK2	3817	hgsc.bcm.edu	37	19	51378101	51378101	+	Silent	SNP	C	C	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	51378101	C	A	51378101	2	1	73	1	0	0	0	0	0	0	0	1	8411	610	22	4		4	KLK2	19	51378101	Silent	SNP	C	TCGA-AK-3454-01A-02D-1361-10	39904866	51378101	7750882	51	4760											
ZNF417	147687	hgsc.bcm.edu	37	19	58421128	58421128	+	Missense_Mutation	SNP	C	C	T	rs3826671	bycluster	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	58421128	C	T	58421128	3	4	73	1	0	0	0	0	1	0	0	0	17906	768	27	1	1213	1	ZNF417	19	58421128	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10	7043027	58421128	707855	52	4761											
FAM83C	128876	hgsc.bcm.edu;ucsc.edu	37	20	33875700	33875700	+	Silent	SNP	G	G	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	33875700	G	A	33875700	2	1	73	1	0	0	0	0	0	0	0	1	5642	1252	44	2		2	FAM83C	20	33875700	Silent	SNP	G	TCGA-AK-3454-01A-02D-1361-10		33875700	29149820	53	4762											
AIFM3	150209	hgsc.bcm.edu;ucsc.edu	37	22	21332000	21332000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	21332000	G	A	21332000	3	1	73	1	0	0	0	0	1	0	0	0	428	1087	38	1	1366	1	AIFM3	22	21332000	Missense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10		21332000	29972566	54	4763											
RFPL2	10739	hgsc.bcm.edu	37	22	32587023	32587023	+	Silent	SNP	C	C	G	rs55974778	bycluster;by1000genomes	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	32587023	C	G	32587023	2	3	73	1	0	0	0	0	0	0	0	1	13267	639	23	4		4	RFPL2	22	32587023	Silent	SNP	C	TCGA-AK-3454-01A-02D-1361-10	11255023	32587023	18717543	55	4764											
TNRC6B	23112	hgsc.bcm.edu	37	22	40719130	40719130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	T	40719130	C	T	40719130	3	4	73	1	0	0	0	0	1	0	0	0	16353	594	21	2	5598	2	TNRC6B	22	40719130	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10	8132107	40719130	10585436	56	4765											
FRMPD4	9758	hgsc.bcm.edu	37	X	12734645	12734645	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	12734645	C	G	12734645	4	3	73	1	0	0	0	0	0	1	0	0	6066	489	17	4	2125	4	FRMPD4	23	12734645	Nonsense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10		12734645	142535915	57	4766											
TBC1D25	4943	hgsc.bcm.edu	37	X	48418768	48418768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	48418768	C	A	48418768	3	1	73	1	0	0	0	0	1	0	0	0	15627	739	26	4	1494	4	TBC1D25	23	48418768	Missense_Mutation	SNP	C	TCGA-AK-3454-01A-02D-1361-10	35684123	48418768	106851792	58	4767											
RLIM	51132	hgsc.bcm.edu;ucsc.edu	37	X	73811648	73811648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	A	73811648	G	A	73811648	3	1	73	1	0	0	0	0	1	0	0	0	13403	1294	45	2	376	2	RLIM	23	73811648	Missense_Mutation	SNP	G	TCGA-AK-3454-01A-02D-1361-10	25392880	73811648	81458912	59	4768											
NXF2	56001	hgsc.bcm.edu	37	X	101581404	101581404	+	Silent	SNP	A	G	G	rs13944	bycluster	TCGA-AK-3454-01A-02D-1361-10	TCGA-AK-3454-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ce4fe755-1381-4c6d-a2a4-5cdefe317aa8	f9afd382-cf74-4984-88a6-d035d83dd2d6	G	101581404	G	G	101581404	2	3	73	1	0	0	0	0	0	0	0	1	10790	175	7	3		3	NXF2	23	101581404	Silent	SNP	A	TCGA-AK-3454-01A-02D-1361-10	27769756	101581404	53689156	60	4769											
FPGT	8790	broad.mit.edu;ucsc.edu	37	1	74670342	74670342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	74670342	A	A	74670342	3	1	74	1	0	0	0	0	1	0	0	0	6044	1174	41	2	625	2	FPGT	1	74670342	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08		74670342	174580279	1	4770											
CASQ2	845	hgsc.bcm.edu;ucsc.edu	37	1	116243990	116243991	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	CA	116243991	-	CA	116243990	7	5	74	1	0	1	1	0	0	0	0	0	2683	962	34	0	131	0	CASQ2	1	116243990	Frame_Shift_Ins	INS	-	TCGA-AK-3455-01A-01D-0966-08	41573648	116243990	133006631	2	4771											
PIP5K1A	8394	hgsc.bcm.edu;ucsc.edu	37	1	151209067	151209068	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	-	151209068	CT	-	151209067	7	5	74	1	0	1	0	1	0	0	0	0	11946	681	24	0	1007	0	PIP5K1A	1	151209067	Frame_Shift_Del	DEL	CT	TCGA-AK-3455-01A-01D-0966-08	34965077	151209067	98041554	3	4772											
FAM58B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200183197	200183197	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	200183197	C	G	200183197	3	3	74	1	0	0	0	0	1	0	0	0	5598	623	22	4	508	4	FAM58B	1	200183197	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08	48974130	200183197	49067424	4	4773											
RPS6KC1	26750	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	213302912	213302912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	213302912	T	C	213302912	3	2	74	1	0	0	0	0	1	0	0	0	13671	1696	59	3	537	3	RPS6KC1	1	213302912	Missense_Mutation	SNP	T	TCGA-AK-3455-01A-01D-0966-08	13119715	213302912	35947709	5	4774											
PLD5	200150	broad.mit.edu;hgsc.bcm.edu	37	1	242428747	242428747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	242428747	G	T	242428747	3	4	74	1	0	0	0	0	1	0	0	0	12056	1299	45	4	1139	4	PLD5	1	242428747	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	29125835	242428747	6821874	6	4775											
KIDINS220	57498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	8871251	8871251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	8871251	T	C	8871251	3	2	74	1	0	0	0	0	1	0	0	0	8278	1493	52	3	404	3	KIDINS220	2	8871251	Missense_Mutation	SNP	T	TCGA-AK-3455-01A-01D-0966-08		8871251	234328122	7	4776											
RAD51AP2	729475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	17698328	17698328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	17698328	A	G	17698328	3	3	74	1	0	0	0	0	1	0	0	0	13000	333	12	3	2136	3	RAD51AP2	2	17698328	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	8827077	17698328	225501045	8	4777											
ANKRD36B	57730	hgsc.bcm.edu	37	2	98124519	98124519	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	-	98124519	T	-	98124519	7	5	74	1	0	1	0	1	0	0	0	0	666	1493	52	0	190	0	ANKRD36B	2	98124519	Frame_Shift_Del	DEL	T	TCGA-AK-3455-01A-01D-0966-08	80426191	98124519	145074854	9	4778											
PDK1	5163	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	173435508	173435508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	173435508	A	G	173435508	3	3	74	1	0	0	0	0	1	0	0	0	11682	449	16	3	931	3	PDK1	2	173435508	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	75310989	173435508	69763865	10	4779											
SPATS2L	26010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	201304031	201304031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	201304031	A	G	201304031	3	3	74	1	0	0	0	0	1	0	0	0	15032	333	12	3	650	3	SPATS2L	2	201304031	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	27868523	201304031	41895342	11	4780											
DOCK10	55619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	225637922	225637922	+	Silent	SNP	C	C	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	225637922	C	T	225637922	2	4	74	1	0	0	0	0	0	0	0	1	4687	581	21	2		2	DOCK10	2	225637922	Silent	SNP	C	TCGA-AK-3455-01A-01D-0966-08	24333891	225637922	17561451	12	4781											
SNED1	25992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	241989270	241989270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	241989270	A	G	241989270	3	3	74	1	0	0	0	0	1	0	0	0	14858	43	2	3	1701	3	SNED1	2	241989270	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	16351348	241989270	1210103	13	4782											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188204	10188204	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	-	10188204	T	-	10188204	7	5	74	1	0	1	0	1	0	0	0	0	17174	1609	56	0	353	0	VHL	3	10188204	Frame_Shift_Del	DEL	T	TCGA-AK-3455-01A-01D-0966-08		10188204	187834226	14	4783											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47143014	47143014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	47143014	A	G	47143014	3	3	74	1	0	0	0	0	1	0	0	0	14144	14	1	3	2801	3	SETD2	3	47143014	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	36954810	47143014	150879416	15	4784											
NFKBIZ	64332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	101570960	101570960	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	101570960	G	C	101570960	3	2	74	1	0	0	0	0	1	0	0	0	10390	933	33	4	327	4	NFKBIZ	3	101570960	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	54427946	101570960	96451470	16	4785											
MYH15	22989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	108117669	108117669	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	108117669	C	G	108117669	3	3	74	1	0	0	0	0	1	0	0	0	10041	855	30	4	860	4	MYH15	3	108117669	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08	6546709	108117669	89904761	17	4786											
PARP14	54625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	122447427	122447427	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	122447427	A	C	122447427	3	2	74	1	0	0	0	0	1	0	0	0	11465	449	16	5	5455	5	PARP14	3	122447427	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	14329758	122447427	75575003	18	4787											
SI	6476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	164767593	164767593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	164767593	G	A	164767593	3	1	74	1	0	0	0	0	1	0	0	0	14310	1348	47	2	4040	2	SI	3	164767593	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	42320166	164767593	33254837	19	4788											
TBL1XR1	79718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	176767807	176767807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	176767807	T	C	176767807	3	2	74	1	0	0	0	0	1	0	0	0	15652	1435	50	3	904	3	TBL1XR1	3	176767807	Missense_Mutation	SNP	T	TCGA-AK-3455-01A-01D-0966-08	12000214	176767807	21254623	20	4789											
PHF17	79960	broad.mit.edu;ucsc.edu	37	4	129782923	129782923	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	129782923	G	G	129782923	3	3	74	1	0	0	0	0	1	0	0	0	11835	1464	51	5	1076	5	PHF17	4	129782923	Missense_Mutation	SNP	T	TCGA-AK-3455-01A-01D-0966-08		129782923	61371353	21	4790											
CDH18	1016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	19747190	19747190	+	Silent	SNP	A	A	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	19747190	A	C	19747190	2	2	74	1	0	0	0	0	0	0	0	1	3105	291	11	5		5	CDH18	5	19747190	Silent	SNP	A	TCGA-AK-3455-01A-01D-0966-08		19747190	161168070	22	4791											
DMGDH	29958	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	78350168	78350168	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	78350168	C	G	78350168	3	3	74	1	0	0	0	0	1	0	0	0	4583	507	18	4	2273	4	DMGDH	5	78350168	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08	58602978	78350168	102565092	23	4792											
TSLP	85480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	110407687	110407687	+	Silent	SNP	C	C	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	110407687	C	T	110407687	2	4	74	1	0	0	0	0	0	0	0	1	16640	564	20	2		2	TSLP	5	110407687	Silent	SNP	C	TCGA-AK-3455-01A-01D-0966-08	32057519	110407687	70507573	24	4793											
ARHGAP26	23092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	142526819	142526819	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	142526819	A	T	142526819	3	4	74	1	0	0	0	0	1	0	0	0	875	130	5	5	1939	5	ARHGAP26	5	142526819	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	32119132	142526819	38388441	25	4794											
IP6K3	117283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33693343	33693343	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	33693343	G	C	33693343	3	2	74	1	0	0	0	0	1	0	0	0	7797	991	35	4	600	4	IP6K3	6	33693343	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08		33693343	137421724	26	4795											
UHRF1BP1	54887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	34826414	34826414	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	34826414	C	T	34826414	4	4	74	1	0	0	0	0	0	1	0	0	16980	595	21	2	2335	2	UHRF1BP1	6	34826414	Nonsense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08	1133071	34826414	136288653	27	4796											
TAAR5	9038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	132910010	132910010	+	Silent	SNP	C	C	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	132910010	C	T	132910010	2	4	74	1	0	0	0	0	0	0	0	1	15503	871	31	1		1	TAAR5	6	132910010	Silent	SNP	C	TCGA-AK-3455-01A-01D-0966-08	98083596	132910010	38205057	28	4797											
MTRF1L	54516	broad.mit.edu	37	6	153323724	153323724	+	Silent	SNP	G	A	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	153323724	A	A	153323724	2	1	74	1	0	0	0	0	0	0	0	1	9967	962	34	2		2	MTRF1L	6	153323724	Silent	SNP	G	TCGA-AK-3455-01A-01D-0966-08	20413714	153323724	17791343	29	4798											
CCDC146	57639	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	76891575	76891575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	76891575	G	T	76891575	3	4	74	1	0	0	0	0	1	0	0	0	2782	1357	47	4	1154	4	CCDC146	7	76891575	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08		76891575	82247088	30	4799											
ZNF804B	219578	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	88963296	88963296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	88963296	G	A	88963296	3	1	74	1	0	0	0	0	1	0	0	0	18183	1377	48	2	1014	2	ZNF804B	7	88963296	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	12071721	88963296	70175367	31	4800											
CUX1	1523	hgsc.bcm.edu;ucsc.edu	37	7	101844801	101844802	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	101844802	-	C	101844801	7	5	74	1	0	1	1	0	0	0	0	0	4066	159	6	0	2361	0	CUX1	7	101844801	Frame_Shift_Ins	INS	-	TCGA-AK-3455-01A-01D-0966-08	12881505	101844801	57293862	32	4801											
CUX1	1523	broad.mit.edu	37	7	101891738	101891738	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	101891738	G	G	101891738	3	3	74	1	0	0	0	0	1	0	0	0	4066	304	11	3	4095	3	CUX1	7	101891738	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	46937	101891738	57246925	33	4802											
DOCK4	9732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	111509659	111509659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	111509659	G	A	111509659	3	1	74	1	0	0	0	0	1	0	0	0	4691	1086	38	1	3948	1	DOCK4	7	111509659	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	9617921	111509659	47629004	34	4803											
C7orf58	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	120765873	120765873	+	Splice_Site	SNP	G	G	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	120765873	G	T	120765873	5	4	74	1	0	0	0	0	0	0	1	0	2407	956	33	4	1091	4	C7orf58	7	120765873	Splice_Site	SNP	G	TCGA-AK-3455-01A-01D-0966-08	9256214	120765873	38372790	35	4804											
ZFHX4	79776	broad.mit.edu;hgsc.bcm.edu	37	8	77616514	77616514	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	77616514	T	G	77616514	3	3	74	1	0	0	0	0	1	0	0	0	17647	1783	62	5	193	5	ZFHX4	8	77616514	Missense_Mutation	SNP	T	TCGA-AK-3455-01A-01D-0966-08		77616514	68747508	36	4805											
ZFPM2	23414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	106801068	106801068	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	106801068	T	G	106801068	3	3	74	1	0	0	0	0	1	0	0	0	17670	1638	57	5	677	5	ZFPM2	8	106801068	Missense_Mutation	SNP	T	TCGA-AK-3455-01A-01D-0966-08	29184554	106801068	39562954	37	4806											
ZFP37	7539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	115806234	115806234	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	115806234	C	G	115806234	3	3	74	1	0	0	0	0	1	0	0	0	17660	681	24	4	1232	4	ZFP37	9	115806234	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08		115806234	25407197	38	4807											
FCN1	2219	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	137805435	137805435	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	137805435	C	G	137805435	3	3	74	1	0	0	0	0	1	0	0	0	5798	478	17	4	668	4	FCN1	9	137805435	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08	21999201	137805435	3407996	39	4808											
CAMK2G	818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75612974	75612974	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	75612974	C	G	75612974	3	3	74	1	0	0	0	0	1	0	0	0	2604	623	22	4	1591	4	CAMK2G	10	75612974	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08		75612974	59921773	40	4809											
KCNQ1	3784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	2606466	2606466	+	Silent	SNP	C	C	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	2606466	C	T	2606466	2	4	74	1	0	0	0	0	0	0	0	1	8089	680	24	2		2	KCNQ1	11	2606466	Silent	SNP	C	TCGA-AK-3455-01A-01D-0966-08		2606466	132400050	41	4810											
DCDC1	341019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	31327871	31327871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	31327871	G	T	31327871	3	4	74	1	0	0	0	0	1	0	0	0	4286	1377	48	4	585	4	DCDC1	11	31327871	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	28721405	31327871	103678645	42	4811											
ZNF408	79797	hgsc.bcm.edu;ucsc.edu	37	11	46726914	46726914	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	-	46726914	T	-	46726914	7	5	74	1	0	1	0	1	0	0	0	0	17900	1696	59	0	1714	0	ZNF408	11	46726914	Frame_Shift_Del	DEL	T	TCGA-AK-3455-01A-01D-0966-08	15399043	46726914	88279602	43	4812											
LRP4	4038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	46916747	46916747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	46916747	G	A	46916747	3	1	74	1	0	0	0	0	1	0	0	0	8966	1144	40	1	4550	1	LRP4	11	46916747	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	189833	46916747	88089769	44	4813											
RTN3	10313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63487838	63487838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	63487838	G	A	63487838	3	1	74	1	0	0	0	0	1	0	0	0	13740	1291	45	2	1874	2	RTN3	11	63487838	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	16571091	63487838	71518678	45	4814											
AGAP2	116986	hgsc.bcm.edu;ucsc.edu	37	12	58126199	58126199	+	Missense_Mutation	SNP	G	G	A	rs138992134	alternate_allele	TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	58126199	G	A	58126199	3	1	74	1	0	0	0	0	1	0	0	0	368	1116	39	1	1849	1	AGAP2	12	58126199	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08		58126199	75725696	46	4815											
SLITRK6	84189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	86368512	86368512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	86368512	C	T	86368512	3	4	74	1	0	0	0	0	1	0	0	0	14760	855	30	2	397	2	SLITRK6	13	86368512	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08		86368512	28801366	47	4816											
GABRA5	2558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	27193284	27193284	+	Silent	SNP	C	C	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	27193284	C	A	27193284	2	1	74	1	0	0	0	0	0	0	0	1	6171	874	31	4		4	GABRA5	15	27193284	Silent	SNP	C	TCGA-AK-3455-01A-01D-0966-08		27193284	75338108	48	4817											
VPS39	23339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42479524	42479524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	42479524	G	A	42479524	3	1	74	1	0	0	0	0	1	0	0	0	17221	1087	38	1	2224	1	VPS39	15	42479524	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	15286240	42479524	60051868	49	4818											
TGM7	116179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43571460	43571460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	43571460	A	C	43571460	3	2	74	1	0	0	0	0	1	0	0	0	15847	304	11	5	450	5	TGM7	15	43571460	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	1091936	43571460	58959932	50	4819											
MAN2C1	4123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75655087	75655087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	75655087	A	G	75655087	3	3	74	1	0	0	0	0	1	0	0	0	9225	188	7	3	2409	3	MAN2C1	15	75655087	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	32083627	75655087	26876305	51	4820											
ZNF646	9726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31094339	31094339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	31094339	C	G	31094339	3	3	74	1	0	0	0	0	1	0	0	0	18074	623	22	4	5431	4	ZNF646	16	31094339	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08		31094339	59260414	52	4821											
ALOXE3	59344	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8021249	8021249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	8021249	G	T	8021249	3	4	74	1	0	0	0	0	1	0	0	0	542	1368	48	4	2135	4	ALOXE3	17	8021249	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08		8021249	73173961	53	4822											
MFSD6L	162387	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8701942	8701942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	8701942	C	T	8701942	3	4	74	1	0	0	0	0	1	0	0	0	9543	536	19	1	1267	1	MFSD6L	17	8701942	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08	680693	8701942	72493268	54	4823											
TEX14	56155	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56638955	56638955	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	C	56638955	A	C	56638955	3	2	74	1	0	0	0	0	1	0	0	0	15790	214	8	5	288	5	TEX14	17	56638955	Missense_Mutation	SNP	A	TCGA-AK-3455-01A-01D-0966-08	47937013	56638955	24556255	55	4824											
MED13	9969	hgsc.bcm.edu;ucsc.edu	37	17	60039068	60039073	+	In_Frame_Del	DEL	ATTTTA	ATTTTA	-	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	ATTTTA	ATTTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	-	60039073	ATTTTA	-	60039068	7	5	74	1	0	1	0	1	0	0	0	0	9437	333	12	0	1423	0	MED13	17	60039068	In_Frame_Del	DEL	ATTTTA	TCGA-AK-3455-01A-01D-0966-08	3400113	60039068	21156142	56	4825											
KCNJ2	3759	broad.mit.edu;ucsc.edu	37	17	68171679	68171679	+	Missense_Mutation	SNP	G	A	A	rs140147979		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	68171679	A	A	68171679	3	1	74	1	0	0	0	0	1	0	0	0	8058	1145	40	1	501	1	KCNJ2	17	68171679	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	8132611	68171679	13023531	57	4826											
METRNL	284207	hgsc.bcm.edu	37	17	81043052	81043053	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	81043053	-	G	81043052	7	5	74	1	0	1	1	0	0	0	0	0	9496	179	7	0	415	0	METRNL	17	81043052	Frame_Shift_Ins	INS	-	TCGA-AK-3455-01A-01D-0966-08	12871373	81043052	152158	58	4827											
AQP4	361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	24436385	24436385	+	Silent	SNP	T	T	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	24436385	T	A	24436385	2	1	74	1	0	0	0	0	0	0	0	1	828	1567	55	5		5	AQP4	18	24436385	Silent	SNP	T	TCGA-AK-3455-01A-01D-0966-08		24436385	53640863	59	4828											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9064631	9064631	+	Silent	SNP	G	G	A	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	A	9064631	G	A	9064631	2	1	74	1	0	0	0	0	0	0	0	1	9980	1335	47	2		2	MUC16	19	9064631	Silent	SNP	G	TCGA-AK-3455-01A-01D-0966-08		9064631	50064352	60	4829											
NLRP8	126205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56473595	56473595	+	Silent	SNP	A	A	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	56473595	A	G	56473595	2	3	74	1	0	0	0	0	0	0	0	1	10490	11	1	3		3	NLRP8	19	56473595	Silent	SNP	A	TCGA-AK-3455-01A-01D-0966-08	47408964	56473595	2655388	61	4830											
ZNF805	390980	broad.mit.edu	37	19	57764639	57764639	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	G	57764639	G	G	57764639	3	3	74	1	0	0	0	0	1	0	0	0	18184	681	24	4	466	4	ZNF805	19	57764639	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08	1291044	57764639	1364344	62	4831											
SAMHD1	25939	hgsc.bcm.edu;ucsc.edu	37	20	35563478	35563478	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	-	35563478	A	-	35563478	7	5	74	1	0	1	0	1	0	0	0	0	13841	420	15	0	1469	0	SAMHD1	20	35563478	Frame_Shift_Del	DEL	A	TCGA-AK-3455-01A-01D-0966-08		35563478	27462042	63	4832											
OGFR	11054	broad.mit.edu;hgsc.bcm.edu	37	20	61444100	61444100	+	Missense_Mutation	SNP	G	G	T	rs6122312		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	61444100	G	T	61444100	3	4	74	1	0	0	0	0	1	0	0	0	10850	971	34	4	1159	4	OGFR	20	61444100	Missense_Mutation	SNP	G	TCGA-AK-3455-01A-01D-0966-08	25880622	61444100	1581420	64	4833											
SMARCB1	6598	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24175874	24175874	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	24175874	C	T	24175874	4	4	74	1	0	0	0	0	0	1	0	0	14787	595	21	2	1132	2	SMARCB1	22	24175874	Nonsense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08		24175874	27128692	65	4834											
MAGEB16	139604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	35820494	35820494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3455-01A-01D-0966-08	TCGA-AK-3455-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3fbeeda4-a6c4-45a4-a963-dc6ca3f7e0ba	0294e2fd-2f19-4fea-9001-b3fc49f9022f	T	35820494	C	T	35820494	3	4	74	1	0	0	0	0	1	0	0	0	9181	855	30	2	183	2	MAGEB16	23	35820494	Missense_Mutation	SNP	C	TCGA-AK-3455-01A-01D-0966-08		35820494	119450066	66	4835											
TAS1R3	83756	broad.mit.edu;hgsc.bcm.edu	37	1	1268924	1268924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	1268924	T	G	1268924	3	3	75	1	0	0	0	0	1	0	0	0	15576	1667	58	5	1661	5	TAS1R3	1	1268924	Missense_Mutation	SNP	T	TCGA-AK-3456-01A-02D-1386-10		1268924	247981697	1	4836											
CTSK	1513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150778608	150778608	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	150778608	A	T	150778608	4	4	75	1	0	0	0	0	0	1	0	0	4039	224	8	5	800	5	CTSK	1	150778608	Nonsense_Mutation	SNP	A	TCGA-AK-3456-01A-02D-1386-10	149509684	150778608	98472013	2	4837											
COBLL1	22837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	165561492	165561492	+	Missense_Mutation	SNP	G	G	A	rs149060063		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	165561492	G	A	165561492	3	1	75	1	0	0	0	0	1	0	0	0	3656	1319	46	2	2412	2	COBLL1	2	165561492	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10		165561492	77637881	3	4838	55	2									
COBLL1	22837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	165561493	165561493	+	Silent	SNP	C	C	A	rs138711091	byfrequency;alternate_allele	TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	165561493	C	A	165561493	2	1	75	1	0	0	0	0	0	0	0	1	3656	755	27	4		4	COBLL1	2	165561493	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	1	165561493	77637880	4	4839	55	2									
NDUFS1	4719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	207011714	207011714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	207011714	T	G	207011714	3	3	75	1	0	0	0	0	1	0	0	0	10298	1783	62	5	1581	5	NDUFS1	2	207011714	Missense_Mutation	SNP	T	TCGA-AK-3456-01A-02D-1386-10	41450221	207011714	36187659	5	4840											
SCN11A	11280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38888542	38888542	+	Silent	SNP	G	G	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	38888542	G	T	38888542	2	4	75	1	0	0	0	0	0	0	0	1	13926	1335	47	4		4	SCN11A	3	38888542	Silent	SNP	G	TCGA-AK-3456-01A-02D-1386-10		38888542	159133888	6	4841											
KIAA2018	205717	hgsc.bcm.edu	37	3	113376125	113376125	+	Silent	SNP	C	C	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	113376125	C	T	113376125	2	4	75	1	0	0	0	0	0	0	0	1	8275	796	28	2		2	KIAA2018	3	113376125	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	74487583	113376125	84646305	7	4842											
MUC4	4585	broad.mit.edu	37	3	195506373	195506373	+	Silent	SNP	G	A	A	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	195506373	A	A	195506373	2	1	75	1	0	0	0	0	0	0	0	1	9985	1335	47	2		2	MUC4	3	195506373	Silent	SNP	G	TCGA-AK-3456-01A-02D-1386-10	82130248	195506373	2516057	8	4843											
ATP8A1	10396	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	42509034	42509034	+	Silent	SNP	G	G	A	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	42509034	G	A	42509034	2	1	75	1	0	0	0	0	0	0	0	1	1192	1072	37	1		1	ATP8A1	4	42509034	Silent	SNP	G	TCGA-AK-3456-01A-02D-1386-10		42509034	148645242	9	4844											
PDCL2	132954	broad.mit.edu	37	4	56448342	56448342	+	Silent	SNP	T	C	C	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	C	56448342	C	C	56448342	2	2	75	1	0	0	0	0	0	0	0	1	11634	1606	56	3		3	PDCL2	4	56448342	Silent	SNP	T	TCGA-AK-3456-01A-02D-1386-10	13939308	56448342	134705934	10	4845											
NHEDC2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	103947531	103947531	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	103947531	A	T	103947531	3	4	75	1	0	0	0	0	1	0	0	0	10408	43	2	5	7	5	NHEDC2	4	103947531	Missense_Mutation	SNP	A	TCGA-AK-3456-01A-02D-1386-10	47499189	103947531	87206745	11	4846											
CARD6	84674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	40843666	40843666	+	Silent	SNP	T	T	G	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	40843666	T	G	40843666	2	3	75	1	0	0	0	0	0	0	0	1	2652	1828	64	5		5	CARD6	5	40843666	Silent	SNP	T	TCGA-AK-3456-01A-02D-1386-10		40843666	140071594	12	4847											
HIVEP1	3096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	12123871	12123871	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	C	12123871	G	C	12123871	3	2	75	1	0	0	0	0	1	0	0	0	7193	933	33	4	3853	4	HIVEP1	6	12123871	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10		12123871	158991196	13	4848											
SLC29A1	2030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44197391	44197391	+	Silent	SNP	C	C	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	44197391	C	T	44197391	2	4	75	1	0	0	0	0	0	0	0	1	14547	535	19	1		1	SLC29A1	6	44197391	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	32073520	44197391	126917676	14	4849											
AARS2	57505	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44274036	44274036	+	Silent	SNP	C	C	A	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	44274036	C	A	44274036	2	1	75	1	0	0	0	0	0	0	0	1	20	726	26	4		4	AARS2	6	44274036	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	76645	44274036	126841031	15	4850											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82579567	82579567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	C	82579567	T	C	82579567	3	2	75	1	0	0	0	0	1	0	0	0	11590	1812	63	3	5188	3	PCLO	7	82579567	Missense_Mutation	SNP	T	TCGA-AK-3456-01A-02D-1386-10		82579567	76559096	16	4851											
NPTX2	4885	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	98256632	98256632	+	Silent	SNP	C	C	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	98256632	C	T	98256632	2	4	75	1	0	0	0	0	0	0	0	1	10610	755	27	1		1	NPTX2	7	98256632	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	15677065	98256632	60882031	17	4852											
SGK223	157285	hgsc.bcm.edu;ucsc.edu	37	8	8185255	8185256	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	AA	8185256	-	AA	8185255	7	5	75	1	0	1	1	0	0	0	0	0	14223	835	29	0	1179	0	SGK223	8	8185255	Frame_Shift_Ins	INS	-	TCGA-AK-3456-01A-02D-1386-10		8185255	138178767	18	4853											
COL27A1	85301	hgsc.bcm.edu	37	9	117026664	117026664	+	Silent	SNP	G	G	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	117026664	G	T	117026664	2	4	75	1	0	0	0	0	0	0	0	1	3687	1219	43	4		4	COL27A1	9	117026664	Silent	SNP	G	TCGA-AK-3456-01A-02D-1386-10		117026664	24186767	19	4854											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61831542	61831542	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	61831542	C	G	61831542	3	3	75	1	0	0	0	0	1	0	0	0	622	681	24	4	4377	4	ANK3	10	61831542	Missense_Mutation	SNP	C	TCGA-AK-3456-01A-02D-1386-10		61831542	73703205	20	4855											
DUPD1	338599	broad.mit.edu	37	10	76797800	76797800	+	Missense_Mutation	SNP	G	A	A	rs148261941	by1000genomes	TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	76797800	A	A	76797800	3	1	75	1	0	0	0	0	1	0	0	0	4806	1115	39	1	209	1	DUPD1	10	76797800	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10	14966258	76797800	58736947	21	4856											
RRP12	23223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99145673	99145673	+	Silent	SNP	C	C	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	99145673	C	T	99145673	2	4	75	1	0	0	0	0	0	0	0	1	13699	796	28	2		2	RRP12	10	99145673	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	22347873	99145673	36389074	22	4857											
LOXL4	84171	broad.mit.edu;hgsc.bcm.edu	37	10	100022771	100022771	+	Silent	SNP	C	C	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	100022771	C	T	100022771	2	4	75	1	0	0	0	0	0	0	0	1	8909	523	19	1		1	LOXL4	10	100022771	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	877098	100022771	35511976	23	4858											
ZNF215	7762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6964378	6964378	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	6964378	C	G	6964378	3	3	75	1	0	0	0	0	1	0	0	0	17783	913	32	4	558	4	ZNF215	11	6964378	Missense_Mutation	SNP	C	TCGA-AK-3456-01A-02D-1386-10		6964378	128042138	24	4859											
KRTAP5-8	57830	hgsc.bcm.edu	37	11	71249532	71249532	+	Missense_Mutation	SNP	C	C	G	rs11234084		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	71249532	C	G	71249532	3	3	75	1	0	0	0	0	1	0	0	0	8574	855	30	4	433	4	KRTAP5-8	11	71249532	Missense_Mutation	SNP	C	TCGA-AK-3456-01A-02D-1386-10	64285154	71249532	63756984	25	4860											
CEP164	22897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117263760	117263760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	117263760	G	A	117263760	3	1	75	1	0	0	0	0	1	0	0	0	3251	1232	43	2	2604	2	CEP164	11	117263760	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10	46014228	117263760	17742756	26	4861											
PRB1	5542	hgsc.bcm.edu	37	12	11506336	11506336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	11506336	G	T	11506336	3	4	75	1	0	0	0	0	1	0	0	0	12452	1348	47	4	298	4	PRB1	12	11506336	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10		11506336	122345559	27	4862											
MCRS1	10445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49954117	49954117	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	49954117	A	T	49954117	3	4	75	1	0	0	0	0	1	0	0	0	9406	246	9	5	574	5	MCRS1	12	49954117	Missense_Mutation	SNP	A	TCGA-AK-3456-01A-02D-1386-10	38447781	49954117	83897778	28	4863											
FREM2	341640	hgsc.bcm.edu	37	13	39262990	39262990	+	Silent	SNP	T	T	C	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	C	39262990	T	C	39262990	2	2	75	1	0	0	0	0	0	0	0	1	6052	1538	54	3		3	FREM2	13	39262990	Silent	SNP	T	TCGA-AK-3456-01A-02D-1386-10		39262990	75906888	29	4864	56	2									
FREM2	341640	hgsc.bcm.edu	37	13	39262991	39262991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	39262991	C	T	39262991	3	4	75	1	0	0	0	0	1	0	0	0	6052	855	30	2	1512	2	FREM2	13	39262991	Missense_Mutation	SNP	C	TCGA-AK-3456-01A-02D-1386-10	1	39262991	75906887	30	4865	56	2									
FAM70B	0	broad.mit.edu	37	13	114469190	114469190	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	114469190	T	T	114469190	3	4	75	1	0	0	0	0	1	0	0	0	5613	536	19	1	155	1	FAM70B	13	114469190	Missense_Mutation	SNP	C	TCGA-AK-3456-01A-02D-1386-10	75206199	114469190	700688	31	4866											
NYNRIN	57523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24886608	24886608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	24886608	G	A	24886608	3	1	75	1	0	0	0	0	1	0	0	0	10803	1319	46	2	5683	2	NYNRIN	14	24886608	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10		24886608	82462932	32	4867											
PTGDR	5729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	52741643	52741643	+	Silent	SNP	C	C	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	52741643	C	T	52741643	2	4	75	1	0	0	0	0	0	0	0	1	12751	738	26	2		2	PTGDR	14	52741643	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	27855035	52741643	54607897	33	4868											
ABCD4	5826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74763075	74763075	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	C	74763075	G	C	74763075	3	2	75	1	0	0	0	0	1	0	0	0	63	1116	39	4	1377	4	ABCD4	14	74763075	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10	22021432	74763075	32586465	34	4869											
DIO2	1734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	80669169	80669169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	80669169	G	A	80669169	3	1	75	1	0	0	0	0	1	0	0	0	4527	1145	40	1	140	1	DIO2	14	80669169	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10	5906094	80669169	26680371	35	4870											
SMEK1	55671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	91942217	91942217	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	C	91942217	G	C	91942217	3	2	75	1	0	0	0	0	1	0	0	0	14806	1328	46	4	1294	4	SMEK1	14	91942217	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10	11273048	91942217	15407323	36	4871											
AHNAK2	113146	hgsc.bcm.edu	37	14	105416254	105416254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	A	105416254	G	A	105416254	3	1	75	1	0	0	0	0	1	0	0	0	415	1059	37	1	11857	1	AHNAK2	14	105416254	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10	13474037	105416254	1933286	37	4872	57	2									
AHNAK2	113146	hgsc.bcm.edu	37	14	105416255	105416255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	105416255	A	T	105416255	3	4	75	1	0	0	0	0	1	0	0	0	415	304	11	5	11858	5	AHNAK2	14	105416255	Missense_Mutation	SNP	A	TCGA-AK-3456-01A-02D-1386-10	1	105416255	1933285	38	4873	57	2									
SQRDL	58472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45965852	45965852	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	45965852	T	G	45965852	3	3	75	1	0	0	0	0	1	0	0	0	15141	1490	52	5	521	5	SQRDL	15	45965852	Missense_Mutation	SNP	T	TCGA-AK-3456-01A-02D-1386-10		45965852	56565540	39	4874											
NLRC5	84166	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57088695	57088695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	57088695	C	G	57088695	3	3	75	1	0	0	0	0	1	0	0	0	10477	623	22	4	3629	4	NLRC5	16	57088695	Missense_Mutation	SNP	C	TCGA-AK-3456-01A-02D-1386-10		57088695	33266058	40	4875											
KATNB1	10300	broad.mit.edu	37	16	57775693	57775693	+	Silent	SNP	C	T	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	57775693	T	T	57775693	2	4	75	1	0	0	0	0	0	0	0	1	7994	813	29	2		2	KATNB1	16	57775693	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	686998	57775693	32579060	41	4876											
RLTPR	146206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67690372	67690372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	67690372	C	T	67690372	3	4	75	1	0	0	0	0	1	0	0	0	13407	739	26	2	3998	2	RLTPR	16	67690372	Missense_Mutation	SNP	C	TCGA-AK-3456-01A-02D-1386-10	9914679	67690372	22664381	42	4877											
ZNF844	284391	broad.mit.edu;hgsc.bcm.edu	37	19	12187458	12187458	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	12187458	A	T	12187458	3	4	75	1	0	0	0	0	1	0	0	0	18202	101	4	5	1537	5	ZNF844	19	12187458	Missense_Mutation	SNP	A	TCGA-AK-3456-01A-02D-1386-10		12187458	46941525	43	4878											
ITPKC	80271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41243662	41243662	+	Silent	SNP	C	C	T	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	T	41243662	C	T	41243662	2	4	75	1	0	0	0	0	0	0	0	1	7926	825	29	2		2	ITPKC	19	41243662	Silent	SNP	C	TCGA-AK-3456-01A-02D-1386-10	29056204	41243662	17885321	44	4879											
NUCB1	4924	broad.mit.edu;hgsc.bcm.edu	37	19	49404186	49404186	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	49404186	C	G	49404186	3	3	75	1	0	0	0	0	1	0	0	0	10725	855	30	4	135	4	NUCB1	19	49404186	Missense_Mutation	SNP	C	TCGA-AK-3456-01A-02D-1386-10	8160524	49404186	9724797	45	4880											
C21orf56	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47588323	47588323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	C	47588323	G	C	47588323	3	2	75	1	0	0	0	0	1	0	0	0	2129	1261	44	4	591	4	C21orf56	21	47588323	Missense_Mutation	SNP	G	TCGA-AK-3456-01A-02D-1386-10		47588323	541572	46	4881											
TCEAL6	158931	hgsc.bcm.edu	37	X	101396082	101396082	+	Silent	SNP	A	A	G	novel		TCGA-AK-3456-01A-02D-1386-10	TCGA-AK-3456-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d36fe1be-96a5-4001-a95e-d499a6087146	0545b2bd-bb06-4ffd-a1d1-dbc3ff486024	G	101396082	A	G	101396082	2	3	75	1	0	0	0	0	0	0	0	1	15687	146	6	3		3	TCEAL6	23	101396082	Silent	SNP	A	TCGA-AK-3456-01A-02D-1386-10		101396082	53874478	47	4882											
C1orf91	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32682463	32682463	+	Silent	SNP	A	A	T	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	T	32682463	A	T	32682463	2	4	76	1	0	0	0	0	0	0	0	1	2070	407	15	5		5	C1orf91	1	32682463	Silent	SNP	A	TCGA-AK-3458-01A-01D-1501-10		32682463	216568158	1	4883											
CYB5R1	51706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	202932810	202932810	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	C	202932810	G	C	202932810	3	2	76	1	0	0	0	0	1	0	0	0	4128	1000	35	4	324	4	CYB5R1	1	202932810	Missense_Mutation	SNP	G	TCGA-AK-3458-01A-01D-1501-10	170250347	202932810	46317811	2	4884											
PLXNA2	5362	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	208215470	208215470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	C	208215470	T	C	208215470	3	2	76	1	0	0	0	0	1	0	0	0	12127	1609	56	3	1469	3	PLXNA2	1	208215470	Missense_Mutation	SNP	T	TCGA-AK-3458-01A-01D-1501-10	5282660	208215470	41035151	3	4885											
EPHX1	2052	broad.mit.edu	37	1	226032308	226032308	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	G	226032308	G	G	226032308	3	3	76	1	0	0	0	0	1	0	0	0	5181	275	10	3	1176	3	EPHX1	1	226032308	Missense_Mutation	SNP	A	TCGA-AK-3458-01A-01D-1501-10	17816838	226032308	23218313	4	4886											
HEATR1	55127	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	236740185	236740185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	236740185	C	A	236740185	3	1	76	1	0	0	0	0	1	0	0	0	7034	564	20	4	3714	4	HEATR1	1	236740185	Missense_Mutation	SNP	C	TCGA-AK-3458-01A-01D-1501-10	10707877	236740185	12510436	5	4887											
C2orf39	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	26647271	26647271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	26647271	C	A	26647271	3	1	76	1	0	0	0	0	1	0	0	0	2166	564	20	4	503	4	C2orf39	2	26647271	Missense_Mutation	SNP	C	TCGA-AK-3458-01A-01D-1501-10		26647271	216552102	6	4888											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188203	10188205	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	-	10188205	CTT	-	10188203	7	5	76	1	0	1	0	1	0	0	0	0	17174	681	24	0	352	0	VHL	3	10188203	In_Frame_Del	DEL	CTT	TCGA-AK-3458-01A-01D-1501-10		10188203	187834227	7	4889											
PRSS45	377047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	46783933	46783933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	46783933	C	A	46783933	3	1	76	1	0	0	0	0	1	0	0	0	12639	912	32	4	96	4	PRSS45	3	46783933	Missense_Mutation	SNP	C	TCGA-AK-3458-01A-01D-1501-10	36595730	46783933	151238497	8	4890											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52620525	52620525	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	-	52620525	A	-	52620525	7	5	76	1	0	1	0	1	0	0	0	0	11498	127	5	0	1641	0	PBRM1	3	52620525	Frame_Shift_Del	DEL	A	TCGA-AK-3458-01A-01D-1501-10	5836592	52620525	145401905	9	4891											
RPL34	6164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	109543328	109543328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	109543328	G	A	109543328	3	1	76	1	0	0	0	0	1	0	0	0	13596	1319	46	2	139	2	RPL34	4	109543328	Missense_Mutation	SNP	G	TCGA-AK-3458-01A-01D-1501-10		109543328	81610948	10	4892											
ELL2	22936	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	95242241	95242241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	95242241	C	A	95242241	3	1	76	1	0	0	0	0	1	0	0	0	5065	797	28	4	1227	4	ELL2	5	95242241	Missense_Mutation	SNP	C	TCGA-AK-3458-01A-01D-1501-10		95242241	85673019	11	4893											
TIGD6	81789	broad.mit.edu;ucsc.edu	37	5	149375454	149375454	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	C	149375454	C	C	149375454	3	2	76	1	0	0	0	0	1	0	0	0	15912	1435	50	3	1111	3	TIGD6	5	149375454	Missense_Mutation	SNP	T	TCGA-AK-3458-01A-01D-1501-10	54133213	149375454	31539806	12	4894											
BTNL8	79908	broad.mit.edu;hgsc.bcm.edu	37	5	180377117	180377117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	180377117	G	A	180377117	3	1	76	1	0	0	0	0	1	0	0	0	1569	1116	39	1	1262	1	BTNL8	5	180377117	Missense_Mutation	SNP	G	TCGA-AK-3458-01A-01D-1501-10	31001663	180377117	538143	13	4895											
SLC13A4	26266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	135370372	135370372	+	Silent	SNP	C	C	T	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	T	135370372	C	T	135370372	2	4	76	1	0	0	0	0	0	0	0	1	14407	523	19	1		1	SLC13A4	7	135370372	Silent	SNP	C	TCGA-AK-3458-01A-01D-1501-10		135370372	23768291	14	4896											
PLIN2	123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	19116637	19116637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	19116637	G	A	19116637	3	1	76	1	0	0	0	0	1	0	0	0	12097	1294	45	2	394	2	PLIN2	9	19116637	Missense_Mutation	SNP	G	TCGA-AK-3458-01A-01D-1501-10		19116637	122096794	15	4897											
UBE2R2	54926	broad.mit.edu;ucsc.edu	37	9	33817901	33817901	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	T	33817901	T	T	33817901	3	4	76	1	0	0	0	0	1	0	0	0	16883	623	22	2	148	2	UBE2R2	9	33817901	Missense_Mutation	SNP	C	TCGA-AK-3458-01A-01D-1501-10	14701264	33817901	107395530	16	4898											
TNFSF15	9966	hgsc.bcm.edu;ucsc.edu	37	9	117552995	117552995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	117552995	T	A	117552995	3	1	76	1	0	0	0	0	1	0	0	0	16320	1493	52	5	266	5	TNFSF15	9	117552995	Missense_Mutation	SNP	T	TCGA-AK-3458-01A-01D-1501-10	83735094	117552995	23660436	17	4899											
GTF3C4	9329	broad.mit.edu	37	9	135555166	135555166	+	Silent	SNP	A	G	G	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	G	135555166	G	G	135555166	2	3	76	1	0	0	0	0	0	0	0	1	6882	69	3	3		3	GTF3C4	9	135555166	Silent	SNP	A	TCGA-AK-3458-01A-01D-1501-10	18002171	135555166	5658265	18	4900											
FRMPD2	143162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	49420118	49420118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	49420118	T	A	49420118	3	1	76	1	0	0	0	0	1	0	0	0	6065	1435	50	5	2507	5	FRMPD2	10	49420118	Missense_Mutation	SNP	T	TCGA-AK-3458-01A-01D-1501-10		49420118	86114629	19	4901											
PTPRCAP	5790	broad.mit.edu	37	11	67203476	67203476	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	T	67203476	T	T	67203476	3	4	76	1	0	0	0	0	1	0	0	0	12811	1348	47	4	275	4	PTPRCAP	11	67203476	Missense_Mutation	SNP	G	TCGA-AK-3458-01A-01D-1501-10		67203476	67803040	20	4902											
BTG4	54766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111368759	111368759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	G	111368759	A	G	111368759	3	3	76	1	0	0	0	0	1	0	0	0	1558	217	8	3	412	3	BTG4	11	111368759	Missense_Mutation	SNP	A	TCGA-AK-3458-01A-01D-1501-10	44165283	111368759	23637757	21	4903											
USP28	57646	broad.mit.edu;ucsc.edu	37	11	113701632	113701632	+	Silent	SNP	C	A	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	113701632	A	A	113701632	2	1	76	1	0	0	0	0	0	0	0	1	17070	697	25	4		4	USP28	11	113701632	Silent	SNP	C	TCGA-AK-3458-01A-01D-1501-10	2332873	113701632	21304884	22	4904											
TECTA	7007	hgsc.bcm.edu;ucsc.edu	37	11	121030869	121030870	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	AT	121030870	-	AT	121030869	7	5	76	1	0	1	1	0	0	0	0	0	15759	594	21	0	4769	0	TECTA	11	121030869	Frame_Shift_Ins	INS	-	TCGA-AK-3458-01A-01D-1501-10	7329237	121030869	13975647	23	4905											
PLXNC1	10154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	94673352	94673352	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	C	94673352	A	C	94673352	3	2	76	1	0	0	0	0	1	0	0	0	12133	69	3	5	3788	5	PLXNC1	12	94673352	Missense_Mutation	SNP	A	TCGA-AK-3458-01A-01D-1501-10		94673352	39178543	24	4906											
HAUS4	54930	hgsc.bcm.edu;ucsc.edu	37	14	23421803	23421806	+	Frame_Shift_Del	DEL	GTGA	GTGA	-	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	GTGA	GTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	-	23421806	GTGA	-	23421803	7	5	76	1	0	1	0	1	0	0	0	0	6975	1386	48	0	978	0	HAUS4	14	23421803	Frame_Shift_Del	DEL	GTGA	TCGA-AK-3458-01A-01D-1501-10		23421803	83927737	25	4907											
ADCK1	57143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	78365584	78365584	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	G	78365584	C	G	78365584	3	3	76	1	0	0	0	0	1	0	0	0	288	710	25	4	742	4	ADCK1	14	78365584	Missense_Mutation	SNP	C	TCGA-AK-3458-01A-01D-1501-10	54943781	78365584	28983956	26	4908											
HERC2	8924	broad.mit.edu;hgsc.bcm.edu	37	15	28515959	28515959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	28515959	G	A	28515959	3	1	76	1	0	0	0	0	1	0	0	0	7065	1348	47	2	13701	2	HERC2	15	28515959	Missense_Mutation	SNP	G	TCGA-AK-3458-01A-01D-1501-10		28515959	74015433	27	4909											
CCDC144A	9720	broad.mit.edu	37	17	16664760	16664760	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	16664760	A	A	16664760	3	1	76	1	0	0	0	0	1	0	0	0	2779	1175	41	2	3444	2	CCDC144A	17	16664760	Missense_Mutation	SNP	G	TCGA-AK-3458-01A-01D-1501-10		16664760	64530450	28	4910											
RIOK3	8780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	21043937	21043937	+	Silent	SNP	T	T	C	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	C	21043937	T	C	21043937	2	2	76	1	0	0	0	0	0	0	0	1	13392	1567	55	3		3	RIOK3	18	21043937	Silent	SNP	T	TCGA-AK-3458-01A-01D-1501-10		21043937	57033311	29	4911											
CNDP1	84735	broad.mit.edu	37	18	72234669	72234669	+	Splice_Site	SNP	G	T	T	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	T	72234669	T	T	72234669	5	4	76	1	0	0	0	0	0	0	1	0	3595	1275	44	4	779	4	CNDP1	18	72234669	Splice_Site	SNP	G	TCGA-AK-3458-01A-01D-1501-10	51190732	72234669	5842579	30	4912											
PEG3	5178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57329187	57329187	+	Silent	SNP	G	G	A	rs142177720	by1000genomes	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	A	57329187	G	A	57329187	2	1	76	1	0	0	0	0	0	0	0	1	11727	1136	40	1		1	PEG3	19	57329187	Silent	SNP	G	TCGA-AK-3458-01A-01D-1501-10		57329187	1799796	31	4913											
KDM5C	8242	broad.mit.edu;ucsc.edu	37	X	53244975	53244975	+	Splice_Site	SNP	A	G	G	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	G	53244975	G	G	53244975	5	3	76	1	0	0	0	0	0	0	1	0	8142	405	14	3	3895	3	KDM5C	23	53244975	Splice_Site	SNP	A	TCGA-AK-3458-01A-01D-1501-10		53244975	102025585	32	4914											
AMOT	154796	broad.mit.edu	37	X	112048309	112048309	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0198f3c3-78f2-4c19-90d5-c77b74044ca2	30e43131-d7aa-407d-9bed-28ae34db1b68	C	112048309	C	C	112048309	3	2	76	1	0	0	0	0	1	0	0	0	582	1357	47	4	1640	4	AMOT	23	112048309	Missense_Mutation	SNP	G	TCGA-AK-3458-01A-01D-1501-10	58803334	112048309	43222251	33	4915											
MSH4	4438	hgsc.bcm.edu	37	1	76282224	76282224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	76282224	G	T	76282224	3	4	77	1	0	0	0	0	1	0	0	0	9879	942	33	4	1004	4	MSH4	1	76282224	Missense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10		76282224	172968397	1	4916											
AP4B1	10717	hgsc.bcm.edu;ucsc.edu	37	1	114447239	114447239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	114447239	T	A	114447239	3	1	77	1	0	0	0	0	1	0	0	0	751	1580	55	5	2158	5	AP4B1	1	114447239	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10	38165015	114447239	134803382	2	4917											
NES	10763	hgsc.bcm.edu	37	1	156640157	156640157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	156640157	G	A	156640157	3	1	77	1	0	0	0	0	1	0	0	0	10344	1232	43	2	1046	2	NES	1	156640157	Missense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10	42192918	156640157	92610464	3	4918											
OLFML2B	25903	hgsc.bcm.edu;ucsc.edu	37	1	161953696	161953696	+	Silent	SNP	G	G	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	161953696	G	A	161953696	2	1	77	1	0	0	0	0	0	0	0	1	10865	1306	46	2		2	OLFML2B	1	161953696	Silent	SNP	G	TCGA-AK-3460-01A-02D-1361-10	5313539	161953696	87296925	4	4919											
RXRG	6258	hgsc.bcm.edu	37	1	165398156	165398156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	165398156	A	C	165398156	3	2	77	1	0	0	0	0	1	0	0	0	13778	69	3	5	1330	5	RXRG	1	165398156	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	3444460	165398156	83852465	5	4920											
RFWD2	64326	hgsc.bcm.edu;ucsc.edu	37	1	176132093	176132093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	176132093	C	A	176132093	3	1	77	1	0	0	0	0	1	0	0	0	13273	595	21	4	1585	4	RFWD2	1	176132093	Missense_Mutation	SNP	C	TCGA-AK-3460-01A-02D-1361-10	10733937	176132093	73118528	6	4921											
TP53BP2	7159	hgsc.bcm.edu	37	1	223986157	223986157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	223986157	G	T	223986157	3	4	77	1	0	0	0	0	1	0	0	0	16396	1357	47	4	1724	4	TP53BP2	1	223986157	Missense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10	47854064	223986157	25264464	7	4922											
THNSL2	55258	hgsc.bcm.edu	37	2	88485426	88485426	+	Silent	SNP	G	G	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	88485426	G	T	88485426	2	4	77	1	0	0	0	0	0	0	0	1	15875	1248	44	4		4	THNSL2	2	88485426	Silent	SNP	G	TCGA-AK-3460-01A-02D-1361-10		88485426	154713947	8	4923											
ZEB2	9839	hgsc.bcm.edu	37	2	145155963	145155963	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	145155963	A	C	145155963	3	2	77	1	0	0	0	0	1	0	0	0	17636	72	3	5	865	5	ZEB2	2	145155963	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	56670537	145155963	98043410	9	4924											
AOX1	316	hgsc.bcm.edu	37	2	201515874	201515874	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	201515874	A	T	201515874	3	4	77	1	0	0	0	0	1	0	0	0	729	217	8	5	3127	5	AOX1	2	201515874	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	56359911	201515874	41683499	10	4925											
FYCO1	79443	hgsc.bcm.edu	37	3	46009603	46009603	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	46009603	T	A	46009603	3	1	77	1	0	0	0	0	1	0	0	0	6132	1812	63	5	3257	5	FYCO1	3	46009603	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10		46009603	152012827	11	4926											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52621464	52621464	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	52621464	G	A	52621464	4	1	77	1	0	0	0	0	0	1	0	0	11498	1153	40	1	1920	1	PBRM1	3	52621464	Nonsense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10	6611861	52621464	145400966	12	4927											
ROBO2	6092	hgsc.bcm.edu	37	3	77626662	77626662	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	77626662	C	G	77626662	3	3	77	1	0	0	0	0	1	0	0	0	13527	913	32	4	2285	4	ROBO2	3	77626662	Missense_Mutation	SNP	C	TCGA-AK-3460-01A-02D-1361-10	25005198	77626662	120395768	13	4928											
FGFBP1	9982	hgsc.bcm.edu;ucsc.edu	37	4	15937909	15937909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	15937909	A	G	15937909	3	3	77	1	0	0	0	0	1	0	0	0	5867	43	2	3	361	3	FGFBP1	4	15937909	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10		15937909	175216367	14	4929											
PDGFRA	5156	hgsc.bcm.edu	37	4	55133800	55133800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	55133800	A	G	55133800	3	3	77	1	0	0	0	0	1	0	0	0	11668	304	11	3	1035	3	PDGFRA	4	55133800	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	39195891	55133800	136020476	15	4930											
LPHN3	23284	hgsc.bcm.edu;ucsc.edu	37	4	62849248	62849248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	62849248	G	A	62849248	3	1	77	1	0	0	0	0	1	0	0	0	8924	1116	39	1	3021	1	LPHN3	4	62849248	Missense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10	7715448	62849248	128305028	16	4931											
ENPEP	2028	hgsc.bcm.edu;ucsc.edu	37	4	111412268	111412268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	111412268	T	G	111412268	3	3	77	1	0	0	0	0	1	0	0	0	5130	1841	64	5	876	5	ENPEP	4	111412268	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10	48563020	111412268	79742008	17	4932											
STOX2	56977	hgsc.bcm.edu;ucsc.edu	37	4	184930539	184930539	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	184930539	C	A	184930539	4	1	77	1	0	0	0	0	0	1	0	0	15332	838	29	4	558	4	STOX2	4	184930539	Nonsense_Mutation	SNP	C	TCGA-AK-3460-01A-02D-1361-10	73518271	184930539	6223737	18	4933											
CCDC111	201973	hgsc.bcm.edu;ucsc.edu	37	4	185599419	185599419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	185599419	A	G	185599419	3	3	77	1	0	0	0	0	1	0	0	0	2750	449	16	3	900	3	CCDC111	4	185599419	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	668880	185599419	5554857	19	4934											
ROPN1L	83853	hgsc.bcm.edu	37	5	10461349	10461350	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	-	10461350	GG	-	10461349	7	5	77	1	0	1	0	1	0	0	0	0	13538	991	35	0	485	0	ROPN1L	5	10461349	Frame_Shift_Del	DEL	GG	TCGA-AK-3460-01A-02D-1361-10		10461349	170453911	20	4935											
GOLPH3	64083	hgsc.bcm.edu;ucsc.edu	37	5	32126658	32126658	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	32126658	A	T	32126658	3	4	77	1	0	0	0	0	1	0	0	0	6575	391	14	5	343	5	GOLPH3	5	32126658	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	21665309	32126658	148788602	21	4936											
SFRS12	0	hgsc.bcm.edu;ucsc.edu	37	5	65455094	65455094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	65455094	C	T	65455094	3	4	77	1	0	0	0	0	1	0	0	0	14180	855	30	2	353	2	SFRS12	5	65455094	Missense_Mutation	SNP	C	TCGA-AK-3460-01A-02D-1361-10	33328436	65455094	115460166	22	4937											
SLC12A2	6558	hgsc.bcm.edu;ucsc.edu	37	5	127477609	127477609	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	127477609	T	G	127477609	4	3	77	1	0	0	0	0	0	1	0	0	14396	1764	61	5	1747	5	SLC12A2	5	127477609	Nonsense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10	62022515	127477609	53437651	23	4938											
FLT4	2324	hgsc.bcm.edu	37	5	180048826	180048826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	180048826	T	C	180048826	3	2	77	1	0	0	0	0	1	0	0	0	5951	1812	63	3	2435	3	FLT4	5	180048826	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10	52571217	180048826	866434	24	4939											
ITPR3	3710	hgsc.bcm.edu	37	6	33635706	33635706	+	Silent	SNP	C	C	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	33635706	C	T	33635706	2	4	77	1	0	0	0	0	0	0	0	1	7929	668	24	2		2	ITPR3	6	33635706	Silent	SNP	C	TCGA-AK-3460-01A-02D-1361-10		33635706	137479361	25	4940											
PPARD	5467	hgsc.bcm.edu	37	6	35392338	35392338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	35392338	A	G	35392338	3	3	77	1	0	0	0	0	1	0	0	0	12305	159	6	3	895	3	PPARD	6	35392338	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	1756632	35392338	135722729	26	4941											
CUL9	23113	hgsc.bcm.edu	37	6	43174215	43174215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	43174215	G	A	43174215	3	1	77	1	0	0	0	0	1	0	0	0	4063	1319	46	2	5277	2	CUL9	6	43174215	Missense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10	7781877	43174215	127940852	27	4942											
GPR116	221395	hgsc.bcm.edu;ucsc.edu	37	6	46856140	46856140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	46856140	A	C	46856140	3	2	77	1	0	0	0	0	1	0	0	0	6640	304	11	5	3852	5	GPR116	6	46856140	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	3681925	46856140	124258927	28	4943											
KATNA1	11104	hgsc.bcm.edu	37	6	149918641	149918641	+	Splice_Site	SNP	A	A	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	149918641	A	C	149918641	5	2	77	1	0	0	0	0	0	0	1	0	7991	405	14	5	335	5	KATNA1	6	149918641	Splice_Site	SNP	A	TCGA-AK-3460-01A-02D-1361-10	103062501	149918641	21196426	29	4944											
RGS17	26575	hgsc.bcm.edu;ucsc.edu	37	6	153332893	153332894	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	153332894	-	T	153332893	7	5	77	1	0	1	1	0	0	0	0	0	13312	565	20	0	187	0	RGS17	6	153332893	Frame_Shift_Ins	INS	-	TCGA-AK-3460-01A-02D-1361-10	3414252	153332893	17782174	30	4945											
BRP44L	0	hgsc.bcm.edu	37	6	166780320	166780320	+	Silent	SNP	T	T	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	166780320	T	C	166780320	2	2	77	1	0	0	0	0	0	0	0	1	1521	1841	64	3		3	BRP44L	6	166780320	Silent	SNP	T	TCGA-AK-3460-01A-02D-1361-10	13447427	166780320	4334747	31	4946											
IQCE	23288	hgsc.bcm.edu	37	7	2632756	2632756	+	Silent	SNP	T	T	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	2632756	T	C	2632756	2	2	77	1	0	0	0	0	0	0	0	1	7813	1838	64	3		3	IQCE	7	2632756	Silent	SNP	T	TCGA-AK-3460-01A-02D-1361-10		2632756	156505907	32	4947											
TMEM196	256130	hgsc.bcm.edu;ucsc.edu	37	7	19765340	19765340	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	19765340	T	A	19765340	3	1	77	1	0	0	0	0	1	0	0	0	16130	1783	62	5	270	5	TMEM196	7	19765340	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10	17132584	19765340	139373323	33	4948											
ZNF273	10793	hgsc.bcm.edu	37	7	64388663	64388663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	64388663	T	A	64388663	3	1	77	1	0	0	0	0	1	0	0	0	17820	1490	52	5	971	5	ZNF273	7	64388663	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10	44623323	64388663	94750000	34	4949											
SLC7A2	6542	hgsc.bcm.edu;ucsc.edu	37	8	17401011	17401011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	17401011	C	A	17401011	3	1	77	1	0	0	0	0	1	0	0	0	14710	681	24	4	289	4	SLC7A2	8	17401011	Missense_Mutation	SNP	C	TCGA-AK-3460-01A-02D-1361-10		17401011	128963011	35	4950											
CSGALNACT1	55790	hgsc.bcm.edu	37	8	19263531	19263531	+	Silent	SNP	A	A	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	19263531	A	T	19263531	2	4	77	1	0	0	0	0	0	0	0	1	3940	1	1	5		5	CSGALNACT1	8	19263531	Silent	SNP	A	TCGA-AK-3460-01A-02D-1361-10	1862520	19263531	127100491	36	4951											
CDCA2	157313	hgsc.bcm.edu;ucsc.edu	37	8	25341648	25341648	+	Silent	SNP	C	C	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	25341648	C	T	25341648	2	4	77	1	0	0	0	0	0	0	0	1	3088	813	29	2		2	CDCA2	8	25341648	Silent	SNP	C	TCGA-AK-3460-01A-02D-1361-10	6078117	25341648	121022374	37	4952											
ZNF462	58499	hgsc.bcm.edu	37	9	109688141	109688141	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	109688141	T	A	109688141	3	1	77	1	0	0	0	0	1	0	0	0	17938	1551	54	5	1954	5	ZNF462	9	109688141	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10		109688141	31525290	38	4953											
C5	727	hgsc.bcm.edu	37	9	123742419	123742419	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	123742419	T	G	123742419	3	3	77	1	0	0	0	0	1	0	0	0	2282	1838	64	5	1486	5	C5	9	123742419	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10	14054278	123742419	17471012	39	4954											
FPGS	2356	hgsc.bcm.edu	37	9	130566577	130566577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	130566577	T	C	130566577	3	2	77	1	0	0	0	0	1	0	0	0	6043	1464	51	3	158	3	FPGS	9	130566577	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10	6824158	130566577	10646854	40	4955											
TUBAL3	79861	hgsc.bcm.edu;ucsc.edu	37	10	5442885	5442885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	5442885	C	T	5442885	3	4	77	1	0	0	0	0	1	0	0	0	16763	884	31	1	1183	1	TUBAL3	10	5442885	Missense_Mutation	SNP	C	TCGA-AK-3460-01A-02D-1361-10		5442885	130091862	41	4956											
SVIL	6840	hgsc.bcm.edu	37	10	29840075	29840075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	29840075	A	G	29840075	3	3	77	1	0	0	0	0	1	0	0	0	15433	217	8	3	6498	3	SVIL	10	29840075	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	24397190	29840075	105694672	42	4957											
LIPN	643418	hgsc.bcm.edu	37	10	90521220	90521220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	90521220	G	A	90521220	3	1	77	1	0	0	0	0	1	0	0	0	8835	1349	47	2	60	2	LIPN	10	90521220	Missense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10	60681145	90521220	45013527	43	4958											
LGI1	9211	hgsc.bcm.edu;ucsc.edu	37	10	95557392	95557392	+	Silent	SNP	T	T	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	95557392	T	C	95557392	2	2	77	1	0	0	0	0	0	0	0	1	8758	1413	49	3		3	LGI1	10	95557392	Silent	SNP	T	TCGA-AK-3460-01A-02D-1361-10	5036172	95557392	39977355	44	4959											
MTG1	92170	hgsc.bcm.edu;ucsc.edu	37	10	135209280	135209280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	135209280	G	A	135209280	3	1	77	1	0	0	0	0	1	0	0	0	9933	1130	39	1	182	1	MTG1	10	135209280	Missense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10	39651888	135209280	325467	45	4960											
OR5F1	338674	hgsc.bcm.edu	37	11	55761256	55761256	+	Silent	SNP	A	A	G	rs77110658	bycluster;byfrequency;by1000genomes	TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	55761256	A	G	55761256	2	3	77	1	0	0	0	0	0	0	0	1	11165	242	9	3		3	OR5F1	11	55761256	Silent	SNP	A	TCGA-AK-3460-01A-02D-1361-10		55761256	79245260	46	4961											
MED17	9440	hgsc.bcm.edu;ucsc.edu	37	11	93521254	93521254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	93521254	A	G	93521254	3	3	77	1	0	0	0	0	1	0	0	0	9442	449	16	3	344	3	MED17	11	93521254	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	37759998	93521254	41485262	47	4962											
CACNA1C	775	hgsc.bcm.edu	37	12	2719719	2719719	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	2719719	G	T	2719719	4	4	77	1	0	0	0	0	0	1	0	0	2542	1175	41	4	3853	4	CACNA1C	12	2719719	Nonsense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10		2719719	131132176	48	4963											
DIP2B	57609	hgsc.bcm.edu;ucsc.edu	37	12	51138438	51138438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	51138438	T	C	51138438	3	2	77	1	0	0	0	0	1	0	0	0	4530	1522	53	3	4697	3	DIP2B	12	51138438	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10	48418719	51138438	82713457	49	4964											
KRT2	3849	hgsc.bcm.edu	37	12	53042852	53042852	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	53042852	A	C	53042852	3	2	77	1	0	0	0	0	1	0	0	0	8464	131	5	5	1047	5	KRT2	12	53042852	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	1904414	53042852	80809043	50	4965											
ACACB	32	hgsc.bcm.edu	37	12	109661640	109661640	+	Silent	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	109661640	A	G	109661640	2	3	77	1	0	0	0	0	0	0	0	1	107	117	5	3		3	ACACB	12	109661640	Silent	SNP	A	TCGA-AK-3460-01A-02D-1361-10	56618788	109661640	24190255	51	4966											
PTPN11	5781	hgsc.bcm.edu	37	12	112893798	112893798	+	Silent	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	112893798	A	G	112893798	2	3	77	1	0	0	0	0	0	0	0	1	12791	301	11	3		3	PTPN11	12	112893798	Silent	SNP	A	TCGA-AK-3460-01A-02D-1361-10	3232158	112893798	20958097	52	4967											
PXN	5829	hgsc.bcm.edu	37	12	120650285	120650285	+	Silent	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	120650285	A	G	120650285	2	3	77	1	0	0	0	0	0	0	0	1	12865	175	7	3		3	PXN	12	120650285	Silent	SNP	A	TCGA-AK-3460-01A-02D-1361-10	7756487	120650285	13201610	53	4968											
FBXL3	26224	hgsc.bcm.edu	37	13	77581415	77581415	+	Silent	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	77581415	A	G	77581415	2	3	77	1	0	0	0	0	0	0	0	1	5727	146	6	3		3	FBXL3	13	77581415	Silent	SNP	A	TCGA-AK-3460-01A-02D-1361-10		77581415	37588463	54	4969											
KIAA0586	9786	hgsc.bcm.edu	37	14	58954742	58954742	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	58954742	C	G	58954742	3	3	77	1	0	0	0	0	1	0	0	0	8193	797	28	4	3300	4	KIAA0586	14	58954742	Missense_Mutation	SNP	C	TCGA-AK-3460-01A-02D-1361-10		58954742	48394798	55	4970											
SMEK1	55671	hgsc.bcm.edu;ucsc.edu	37	14	91937228	91937228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	91937228	C	A	91937228	3	1	77	1	0	0	0	0	1	0	0	0	14806	652	23	4	912	4	SMEK1	14	91937228	Missense_Mutation	SNP	C	TCGA-AK-3460-01A-02D-1361-10	32982486	91937228	15412312	56	4971											
UBR1	197131	hgsc.bcm.edu;ucsc.edu	37	15	43367229	43367229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	43367229	G	C	43367229	3	2	77	1	0	0	0	0	1	0	0	0	16913	1029	36	4	4949	4	UBR1	15	43367229	Missense_Mutation	SNP	G	TCGA-AK-3460-01A-02D-1361-10		43367229	59164163	57	4972											
LINGO1	84894	hgsc.bcm.edu	37	15	77907534	77907534	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	77907534	A	T	77907534	3	4	77	1	0	0	0	0	1	0	0	0	8821	391	14	5	1151	5	LINGO1	15	77907534	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	34540305	77907534	24623858	58	4973											
PSMD7	5713	hgsc.bcm.edu;ucsc.edu	37	16	74334042	74334042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	74334042	T	G	74334042	3	3	77	1	0	0	0	0	1	0	0	0	12713	1725	60	5	110	5	PSMD7	16	74334042	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10		74334042	16020711	59	4974											
ADAMTS18	170692	hgsc.bcm.edu	37	16	77398222	77398222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	77398222	A	G	77398222	3	3	77	1	0	0	0	0	1	0	0	0	263	304	11	3	2906	3	ADAMTS18	16	77398222	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	3064180	77398222	12956531	60	4975											
MAP2K3	5606	hgsc.bcm.edu	37	17	21207795	21207795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	21207795	T	G	21207795	3	3	77	1	0	0	0	0	1	0	0	0	9245	1841	64	5	656	5	MAP2K3	17	21207795	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10		21207795	59987415	61	4976											
NF1	4763	hgsc.bcm.edu	37	17	29528456	29528456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	A	G	A	A	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	29528456	A	G	29528456	3	3	77	1	0	0	0	0	1	0	0	0	10363	391	14	3	1255	3	NF1	17	29528456	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	8320661	29528456	51666754	62	4977											
CCDC45	0	hgsc.bcm.edu;ucsc.edu	37	17	62506379	62506379	+	Silent	SNP	C	C	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	62506379	C	A	62506379	2	1	77	1	0	0	0	0	0	0	0	1	2818	813	29	4		4	CCDC45	17	62506379	Silent	SNP	C	TCGA-AK-3460-01A-02D-1361-10	32977923	62506379	18688831	63	4978											
CYGB	114757	hgsc.bcm.edu	37	17	74527607	74527607	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	74527607	A	T	74527607	3	4	77	1	0	0	0	0	1	0	0	0	4141	304	11	5	274	5	CYGB	17	74527607	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	12021228	74527607	6667603	64	4979											
SAFB2	9667	hgsc.bcm.edu;ucsc.edu	37	19	5621374	5621374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	5621374	T	C	5621374	3	2	77	1	0	0	0	0	1	0	0	0	13820	1493	52	3	2721	3	SAFB2	19	5621374	Missense_Mutation	SNP	T	TCGA-AK-3460-01A-02D-1361-10		5621374	53507609	65	4980											
GPR108	56927	hgsc.bcm.edu;ucsc.edu	37	19	6731511	6731511	+	Silent	SNP	C	C	T	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	T	6731511	C	T	6731511	2	4	77	1	0	0	0	0	0	0	0	1	6631	813	29	2		2	GPR108	19	6731511	Silent	SNP	C	TCGA-AK-3460-01A-02D-1361-10	1110137	6731511	52397472	66	4981											
PPP1R15A	23645	hgsc.bcm.edu	37	19	49377208	49377208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	49377208	A	G	49377208	3	3	77	1	0	0	0	0	1	0	0	0	12373	72	3	3	720	3	PPP1R15A	19	49377208	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	42645697	49377208	9751775	67	4982											
MYH14	79784	hgsc.bcm.edu	37	19	50813031	50813033	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	-	50813033	CAG	-	50813031	7	5	77	1	0	1	0	1	0	0	0	0	10040	594	21	0	6261	0	MYH14	19	50813031	In_Frame_Del	DEL	CAG	TCGA-AK-3460-01A-02D-1361-10	1435823	50813031	8315952	68	4983											
PHACTR3	116154	hgsc.bcm.edu	37	20	58322874	58322874	+	Silent	SNP	G	G	A	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	A	58322874	G	A	58322874	2	1	77	1	0	0	0	0	0	0	0	1	11818	1335	47	2		2	PHACTR3	20	58322874	Silent	SNP	G	TCGA-AK-3460-01A-02D-1361-10		58322874	4702646	69	4984											
WDR13	64743	hgsc.bcm.edu;ucsc.edu	37	X	48462751	48462751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	C	48462751	A	C	48462751	3	2	77	1	0	0	0	0	1	0	0	0	17287	217	8	5	1276	5	WDR13	23	48462751	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10		48462751	106807809	70	4985											
RPS6KA6	27330	hgsc.bcm.edu;ucsc.edu	37	X	83320077	83320077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3460-01A-02D-1361-10	TCGA-AK-3460-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	bcd65e5d-a076-4c08-994a-78979a212d5b	40b5509c-dc6b-4999-a1ff-8218cdb5e9e2	G	83320077	A	G	83320077	3	3	77	1	0	0	0	0	1	0	0	0	13668	391	14	3	231	3	RPS6KA6	23	83320077	Missense_Mutation	SNP	A	TCGA-AK-3460-01A-02D-1361-10	34857326	83320077	71950483	71	4986											
RCC2	55920	hgsc.bcm.edu	37	1	17743003	17743003	+	Silent	SNP	T	T	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	17743003	T	A	17743003	2	1	78	1	0	0	0	0	0	0	0	1	13187	1538	54	5		5	RCC2	1	17743003	Silent	SNP	T	TCGA-AK-3461-01A-02D-1361-10		17743003	231507618	1	4987											
C1orf216	127703	hgsc.bcm.edu;ucsc.edu	37	1	36181451	36181451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	36181451	C	T	36181451	3	4	78	1	0	0	0	0	1	0	0	0	2033	864	30	2	221	2	C1orf216	1	36181451	Missense_Mutation	SNP	C	TCGA-AK-3461-01A-02D-1361-10	18438448	36181451	213069170	2	4988											
ZC3H12A	80149	hgsc.bcm.edu	37	1	37949076	37949076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	37949076	G	C	37949076	3	2	78	1	0	0	0	0	1	0	0	0	17573	971	34	4	1682	4	ZC3H12A	1	37949076	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10	1767625	37949076	211301545	3	4989											
STXBP3	6814	hgsc.bcm.edu	37	1	109325070	109325070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	109325070	A	G	109325070	3	3	78	1	0	0	0	0	1	0	0	0	15366	304	11	3	874	3	STXBP3	1	109325070	Missense_Mutation	SNP	A	TCGA-AK-3461-01A-02D-1361-10	71375994	109325070	139925551	4	4990											
TLR5	7100	hgsc.bcm.edu;ucsc.edu	37	1	223284977	223284977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	223284977	T	C	223284977	3	2	78	1	0	0	0	0	1	0	0	0	15966	1435	50	3	1183	3	TLR5	1	223284977	Missense_Mutation	SNP	T	TCGA-AK-3461-01A-02D-1361-10	113959907	223284977	25965644	5	4991											
GREB1	9687	hgsc.bcm.edu	37	2	11777871	11777871	+	Silent	SNP	G	G	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	11777871	G	A	11777871	2	1	78	1	0	0	0	0	0	0	0	1	6767	1103	39	1		1	GREB1	2	11777871	Silent	SNP	G	TCGA-AK-3461-01A-02D-1361-10		11777871	231421502	6	4992											
UGP2	7360	hgsc.bcm.edu;ucsc.edu	37	2	64083539	64083539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	64083539	T	C	64083539	3	2	78	1	0	0	0	0	1	0	0	0	16955	1551	54	3	125	3	UGP2	2	64083539	Missense_Mutation	SNP	T	TCGA-AK-3461-01A-02D-1361-10	52305668	64083539	179115834	7	4993											
AOX1	316	hgsc.bcm.edu	37	2	201474078	201474078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	201474078	A	C	201474078	3	2	78	1	0	0	0	0	1	0	0	0	729	333	12	5	1140	5	AOX1	2	201474078	Missense_Mutation	SNP	A	TCGA-AK-3461-01A-02D-1361-10	137390539	201474078	41725295	8	4994											
TRIP12	9320	hgsc.bcm.edu	37	2	230675716	230675716	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	230675716	G	A	230675716	4	1	78	1	0	0	0	0	0	1	0	0	16568	1299	45	2	4133	2	TRIP12	2	230675716	Nonsense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10	29201638	230675716	12523657	9	4995											
EFHD1	80303	hgsc.bcm.edu	37	2	233527579	233527579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	233527579	G	A	233527579	3	1	78	1	0	0	0	0	1	0	0	0	4950	1203	42	2	376	2	EFHD1	2	233527579	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10	2851863	233527579	9671794	10	4996											
ANKRD28	23243	hgsc.bcm.edu	37	3	15755032	15755032	+	Splice_Site	SNP	A	A	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	15755032	A	G	15755032	5	3	78	1	0	0	0	0	0	0	1	0	656	405	14	3	2135	3	ANKRD28	3	15755032	Splice_Site	SNP	A	TCGA-AK-3461-01A-02D-1361-10		15755032	182267398	11	4997											
DNAH12	201625	hgsc.bcm.edu	37	3	57389197	57389197	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	57389197	G	C	57389197	3	2	78	1	0	0	0	0	1	0	0	0	4602	1066	37	4	2616	4	DNAH12	3	57389197	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10	41634165	57389197	140633233	12	4998											
PVRL3	25945	hgsc.bcm.edu	37	3	110831084	110831084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	110831084	T	C	110831084	3	2	78	1	0	0	0	0	1	0	0	0	12854	1841	64	3	374	3	PVRL3	3	110831084	Missense_Mutation	SNP	T	TCGA-AK-3461-01A-02D-1361-10	53441887	110831084	87191346	13	4999											
KALRN	8997	hgsc.bcm.edu	37	3	124369683	124369683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	124369683	G	C	124369683	3	2	78	1	0	0	0	0	1	0	0	0	7982	971	34	4	5996	4	KALRN	3	124369683	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10	13538599	124369683	73652747	14	5000											
MED12L	116931	hgsc.bcm.edu	37	3	151134118	151134118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	151134118	C	T	151134118	3	4	78	1	0	0	0	0	1	0	0	0	9436	739	26	2	6373	2	MED12L	3	151134118	Missense_Mutation	SNP	C	TCGA-AK-3461-01A-02D-1361-10	26764435	151134118	46888312	15	5001											
LRRC66	339977	hgsc.bcm.edu;ucsc.edu	37	4	52862202	52862202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	52862202	T	G	52862202	3	3	78	1	0	0	0	0	1	0	0	0	9025	1696	59	5	1660	5	LRRC66	4	52862202	Missense_Mutation	SNP	T	TCGA-AK-3461-01A-02D-1361-10		52862202	138292074	16	5002											
SLC4A4	8671	hgsc.bcm.edu	37	4	72423512	72423512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	72423512	A	T	72423512	3	4	78	1	0	0	0	0	1	0	0	0	14669	301	11	5	3050	5	SLC4A4	4	72423512	Missense_Mutation	SNP	A	TCGA-AK-3461-01A-02D-1361-10	19561310	72423512	118730764	17	5003											
SYNPO2	171024	hgsc.bcm.edu	37	4	119948178	119948178	+	Silent	SNP	C	C	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	119948178	C	T	119948178	2	4	78	1	0	0	0	0	0	0	0	1	15469	842	30	2		2	SYNPO2	4	119948178	Silent	SNP	C	TCGA-AK-3461-01A-02D-1361-10	47524666	119948178	71206098	18	5004											
FAM105A	54491	hgsc.bcm.edu	37	5	14602319	14602319	+	Missense_Mutation	SNP	C	C	A	rs144733724		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	14602319	C	A	14602319	3	1	78	1	0	0	0	0	1	0	0	0	5391	826	29	4	394	4	FAM105A	5	14602319	Missense_Mutation	SNP	C	TCGA-AK-3461-01A-02D-1361-10		14602319	166312941	19	5005											
NIPBL	25836	hgsc.bcm.edu	37	5	37051934	37051934	+	Silent	SNP	C	C	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	37051934	C	T	37051934	2	4	78	1	0	0	0	0	0	0	0	1	10435	477	17	2		2	NIPBL	5	37051934	Silent	SNP	C	TCGA-AK-3461-01A-02D-1361-10	22449615	37051934	143863326	20	5006											
DNAH8	1769	hgsc.bcm.edu;ucsc.edu	37	6	38997960	38997960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	38997960	C	T	38997960	3	4	78	1	0	0	0	0	1	0	0	0	4609	623	22	2	13619	2	DNAH8	6	38997960	Missense_Mutation	SNP	C	TCGA-AK-3461-01A-02D-1361-10		38997960	132117107	21	5007											
DPY19L1	23333	hgsc.bcm.edu	37	7	35057542	35057542	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	35057542	A	C	35057542	3	2	78	1	0	0	0	0	1	0	0	0	4742	11	1	5	1963	5	DPY19L1	7	35057542	Missense_Mutation	SNP	A	TCGA-AK-3461-01A-02D-1361-10		35057542	124081121	22	5008											
GUSB	2990	hgsc.bcm.edu;ucsc.edu	37	7	65441161	65441161	+	Silent	SNP	C	C	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	65441161	C	T	65441161	2	4	78	1	0	0	0	0	0	0	0	1	6909	680	24	2		2	GUSB	7	65441161	Silent	SNP	C	TCGA-AK-3461-01A-02D-1361-10	30383619	65441161	93697502	23	5009											
COPS6	10980	hgsc.bcm.edu;ucsc.edu	37	7	99689085	99689086	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	-	99689086	CT	-	99689085	7	5	78	1	0	1	0	1	0	0	0	0	3739	797	28	0	819	0	COPS6	7	99689085	Frame_Shift_Del	DEL	CT	TCGA-AK-3461-01A-02D-1361-10	34247924	99689085	59449578	24	5010											
CNOT4	4850	hgsc.bcm.edu;ucsc.edu	37	7	135095315	135095315	+	Silent	SNP	A	A	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	135095315	A	T	135095315	2	4	78	1	0	0	0	0	0	0	0	1	3623	30	2	5		5	CNOT4	7	135095315	Silent	SNP	A	TCGA-AK-3461-01A-02D-1361-10	35406230	135095315	24043348	25	5011											
SSPO	23145	hgsc.bcm.edu;ucsc.edu	37	7	149502986	149502986	+	Silent	SNP	A	A	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	149502986	A	G	149502986	2	3	78	1	0	0	0	0	0	0	0	1	15201	117	5	3		3	SSPO	7	149502986	Silent	SNP	A	TCGA-AK-3461-01A-02D-1361-10	14407671	149502986	9635677	26	5012											
AGPAT5	55326	hgsc.bcm.edu	37	8	6588326	6588326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	6588326	G	T	6588326	3	4	78	1	0	0	0	0	1	0	0	0	390	1368	48	4	394	4	AGPAT5	8	6588326	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10		6588326	139775696	27	5013											
ZFYVE27	118813	hgsc.bcm.edu	37	10	99510142	99510142	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	99510142	A	T	99510142	3	4	78	1	0	0	0	0	1	0	0	0	17681	304	11	5	741	5	ZFYVE27	10	99510142	Missense_Mutation	SNP	A	TCGA-AK-3461-01A-02D-1361-10		99510142	36024605	28	5014											
BTRC	8945	hgsc.bcm.edu	37	10	103294568	103294568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	103294568	T	G	103294568	3	3	78	1	0	0	0	0	1	0	0	0	1571	1742	61	5	1286	5	BTRC	10	103294568	Missense_Mutation	SNP	T	TCGA-AK-3461-01A-02D-1361-10	3784426	103294568	32240179	29	5015											
PCNXL3	399909	hgsc.bcm.edu	37	11	65384727	65384727	+	Silent	SNP	C	C	T	rs12790427	bycluster;byfrequency;by1000genomes	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	65384727	C	T	65384727	2	4	78	1	0	0	0	0	0	0	0	1	11600	639	23	1		1	PCNXL3	11	65384727	Silent	SNP	C	TCGA-AK-3461-01A-02D-1361-10		65384727	69621789	30	5016											
ALDH3B2	222	hgsc.bcm.edu;ucsc.edu	37	11	67431199	67431199	+	Missense_Mutation	SNP	C	C	T	rs180859869	by1000genomes	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	67431199	C	T	67431199	3	4	78	1	0	0	0	0	1	0	0	0	500	652	23	1	258	1	ALDH3B2	11	67431199	Missense_Mutation	SNP	C	TCGA-AK-3461-01A-02D-1361-10	2046472	67431199	67575317	31	5017											
TMEM45B	120224	hgsc.bcm.edu	37	11	129728512	129728512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	129728512	G	A	129728512	3	1	78	1	0	0	0	0	1	0	0	0	16182	1349	47	2	778	2	TMEM45B	11	129728512	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10	62297313	129728512	5278004	32	5018											
NR2C1	7181	hgsc.bcm.edu	37	12	95445694	95445694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	95445694	C	A	95445694	3	1	78	1	0	0	0	0	1	0	0	0	10629	565	20	4	1108	4	NR2C1	12	95445694	Missense_Mutation	SNP	C	TCGA-AK-3461-01A-02D-1361-10		95445694	38406201	33	5019											
GLT8D2	83468	hgsc.bcm.edu	37	12	104387233	104387233	+	Missense_Mutation	SNP	T	T	C	rs145520946	bycluster;byfrequency;by1000genomes	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	104387233	T	C	104387233	3	2	78	1	0	0	0	0	1	0	0	0	6477	1493	52	3	240	3	GLT8D2	12	104387233	Missense_Mutation	SNP	T	TCGA-AK-3461-01A-02D-1361-10	8941539	104387233	29464662	34	5020											
TEP1	7011	hgsc.bcm.edu	37	14	20864870	20864870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	20864870	G	T	20864870	3	4	78	1	0	0	0	0	1	0	0	0	15771	1281	45	4	6498	4	TEP1	14	20864870	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10		20864870	86484670	35	5021											
FANCM	57697	hgsc.bcm.edu	37	14	45658098	45658098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	45658098	G	T	45658098	3	4	78	1	0	0	0	0	1	0	0	0	5678	1377	48	4	4951	4	FANCM	14	45658098	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10	24793228	45658098	61691442	36	5022											
ONECUT1	3175	hgsc.bcm.edu	37	15	53049880	53049880	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	53049880	A	T	53049880	3	4	78	1	0	0	0	0	1	0	0	0	10875	40	2	5	131	5	ONECUT1	15	53049880	Missense_Mutation	SNP	A	TCGA-AK-3461-01A-02D-1361-10		53049880	49481512	37	5023											
SPG21	51324	hgsc.bcm.edu;ucsc.edu	37	15	65266968	65266968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	65266968	T	C	65266968	3	2	78	1	0	0	0	0	1	0	0	0	15055	1406	49	3	522	3	SPG21	15	65266968	Missense_Mutation	SNP	T	TCGA-AK-3461-01A-02D-1361-10	12217088	65266968	37264424	38	5024											
SIN3A	25942	hgsc.bcm.edu	37	15	75702579	75702579	+	Silent	SNP	A	A	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	75702579	A	G	75702579	2	3	78	1	0	0	0	0	0	0	0	1	14338	98	4	3		3	SIN3A	15	75702579	Silent	SNP	A	TCGA-AK-3461-01A-02D-1361-10	10435611	75702579	26828813	39	5025											
OTOA	146183	hgsc.bcm.edu	37	16	21712268	21712268	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	21712268	C	G	21712268	3	3	78	1	0	0	0	0	1	0	0	0	11309	816	29	4	972	4	OTOA	16	21712268	Missense_Mutation	SNP	C	TCGA-AK-3461-01A-02D-1361-10		21712268	68642485	40	5026											
CSNK2A2	1459	hgsc.bcm.edu;ucsc.edu	37	16	58220677	58220677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	58220677	G	C	58220677	3	2	78	1	0	0	0	0	1	0	0	0	3960	1368	48	4	788	4	CSNK2A2	16	58220677	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10	36508409	58220677	32134076	41	5027											
USP10	9100	hgsc.bcm.edu	37	16	84773939	84773939	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	84773939	C	G	84773939	3	3	78	1	0	0	0	0	1	0	0	0	17053	912	32	4	125	4	USP10	16	84773939	Missense_Mutation	SNP	C	TCGA-AK-3461-01A-02D-1361-10	26553262	84773939	5580814	42	5028											
UBTF	7343	hgsc.bcm.edu	37	17	42286826	42286826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	42286826	A	G	42286826	3	3	78	1	0	0	0	0	1	0	0	0	16921	333	12	3	515	3	UBTF	17	42286826	Missense_Mutation	SNP	A	TCGA-AK-3461-01A-02D-1361-10		42286826	38908384	43	5029											
PPP1R9B	84687	hgsc.bcm.edu	37	17	48226734	48226734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	48226734	G	T	48226734	3	4	78	1	0	0	0	0	1	0	0	0	12389	1174	41	4	1348	4	PPP1R9B	17	48226734	Missense_Mutation	SNP	G	TCGA-AK-3461-01A-02D-1361-10	5939908	48226734	32968476	44	5030											
ABCC3	8714	hgsc.bcm.edu	37	17	48735824	48735824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	48735824	T	C	48735824	3	2	78	1	0	0	0	0	1	0	0	0	54	1841	64	3	663	3	ABCC3	17	48735824	Missense_Mutation	SNP	T	TCGA-AK-3461-01A-02D-1361-10	509090	48735824	32459386	45	5031											
TGIF1	7050	hgsc.bcm.edu	37	18	3447755	3447755	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	C	3447755	A	C	3447755	3	2	78	1	0	0	0	0	1	0	0	0	15837	11	1	5	20	5	TGIF1	18	3447755	Missense_Mutation	SNP	A	TCGA-AK-3461-01A-02D-1361-10		3447755	74629493	46	5032											
SH3GL1	6455	hgsc.bcm.edu	37	19	4363420	4363420	+	Silent	SNP	G	G	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	4363420	G	A	4363420	2	1	78	1	0	0	0	0	0	0	0	1	14263	1256	44	2		2	SH3GL1	19	4363420	Silent	SNP	G	TCGA-AK-3461-01A-02D-1361-10		4363420	54765563	47	5033											
ATP1A3	478	hgsc.bcm.edu;ucsc.edu	37	19	42473672	42473672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	42473672	A	G	42473672	3	3	78	1	0	0	0	0	1	0	0	0	1130	246	9	3	458	3	ATP1A3	19	42473672	Missense_Mutation	SNP	A	TCGA-AK-3461-01A-02D-1361-10	38110252	42473672	16655311	48	5034											
BCAM	4059	hgsc.bcm.edu	37	19	45322915	45322915	+	Silent	SNP	T	T	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	45322915	T	A	45322915	2	1	78	1	0	0	0	0	0	0	0	1	1344	1799	63	5		5	BCAM	19	45322915	Silent	SNP	T	TCGA-AK-3461-01A-02D-1361-10	2849243	45322915	13806068	49	5035											
HIF3A	64344	hgsc.bcm.edu	37	19	46828841	46828841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	46828841	T	A	46828841	3	1	78	1	0	0	0	0	1	0	0	0	7112	1551	54	5	1451	5	HIF3A	19	46828841	Missense_Mutation	SNP	T	TCGA-AK-3461-01A-02D-1361-10	1505926	46828841	12300142	50	5036											
CARD8	22900	hgsc.bcm.edu	37	19	48715114	48715114	+	Silent	SNP	C	C	A	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	A	48715114	C	A	48715114	2	1	78	1	0	0	0	0	0	0	0	1	2653	581	21	4		4	CARD8	19	48715114	Silent	SNP	C	TCGA-AK-3461-01A-02D-1361-10	1886273	48715114	10413869	51	5037											
ZNFX1	57169	hgsc.bcm.edu	37	20	47886860	47886860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	T	47886860	C	T	47886860	3	4	78	1	0	0	0	0	1	0	0	0	18217	507	18	2	4315	2	ZNFX1	20	47886860	Missense_Mutation	SNP	C	TCGA-AK-3461-01A-02D-1361-10		47886860	15138660	52	5038											
MICAL3	57553	hgsc.bcm.edu	37	22	18304890	18304890	+	Silent	SNP	A	A	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	18304890	A	G	18304890	2	3	78	1	0	0	0	0	0	0	0	1	9578	30	2	3		3	MICAL3	22	18304890	Silent	SNP	A	TCGA-AK-3461-01A-02D-1361-10		18304890	32999676	53	5039											
GTSE1	51512	hgsc.bcm.edu	37	22	46719127	46719127	+	Silent	SNP	A	A	G	novel		TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d173f94f-7c73-4d87-a536-9bb8fea88017	1db1d58a-85dc-4471-9c76-9e5d6d46aba7	G	46719127	A	G	46719127	2	3	78	1	0	0	0	0	0	0	0	1	6892	146	6	3		3	GTSE1	22	46719127	Silent	SNP	A	TCGA-AK-3461-01A-02D-1361-10	28414237	46719127	4585439	54	5040											
CAMTA1	23261	broad.mit.edu	37	1	7797351	7797351	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	7797351	G	A	7797351	3	1	79	1	0	0	0	0	1	0	0	0	2615	1145	40	1	3437	1	CAMTA1	1	7797351	Missense_Mutation	SNP	G	TCGA-AK-3465-01A-01D-0966-08		7797351	241453270	1	5041											
SLC45A1	50651	broad.mit.edu	37	1	8399610	8399610	+	Missense_Mutation	SNP	A	A	G			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	G	8399610	A	G	8399610	3	3	79	1	0	0	0	0	1	0	0	0	14653	449	16	3	1858	3	SLC45A1	1	8399610	Missense_Mutation	SNP	A	TCGA-AK-3465-01A-01D-0966-08	602259	8399610	240851011	2	5042											
C1QC	714	broad.mit.edu	37	1	22974251	22974251	+	Missense_Mutation	SNP	C	C	G			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	G	22974251	C	G	22974251	3	3	79	1	0	0	0	0	1	0	0	0	1959	855	30	4	719	4	C1QC	1	22974251	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08	14574641	22974251	226276370	3	5043											
KIAA1324	57535	broad.mit.edu	37	1	109740267	109740267	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	109740267	C	T	109740267	4	4	79	1	0	0	0	0	0	1	0	0	8230	876	31	1	2355	1	KIAA1324	1	109740267	Nonsense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08	86766016	109740267	139510354	4	5044											
RORC	6097	broad.mit.edu	37	1	151801927	151801927	+	Silent	SNP	C	C	A			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	151801927	C	A	151801927	2	1	79	1	0	0	0	0	0	0	0	1	13543	581	21	4		4	RORC	1	151801927	Silent	SNP	C	TCGA-AK-3465-01A-01D-0966-08	42061660	151801927	97448694	5	5045											
GTF3C2	2976	broad.mit.edu	37	2	27559290	27559290	+	Missense_Mutation	SNP	A	A	G			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	G	27559290	A	G	27559290	3	3	79	1	0	0	0	0	1	0	0	0	6880	14	1	3	1653	3	GTF3C2	2	27559290	Missense_Mutation	SNP	A	TCGA-AK-3465-01A-01D-0966-08		27559290	215640083	6	5046											
PRR23B	389151	broad.mit.edu	37	3	138739488	138739488	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	138739488	G	A	138739488	3	1	79	1	0	0	0	0	1	0	0	0	12605	1116	39	1	785	1	PRR23B	3	138739488	Missense_Mutation	SNP	G	TCGA-AK-3465-01A-01D-0966-08		138739488	59282942	7	5047											
ALB	213	broad.mit.edu	37	4	74270115	74270115	+	Missense_Mutation	SNP	G	G	A	rs74821926		TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	74270115	G	A	74270115	3	1	79	1	0	0	0	0	1	0	0	0	486	1058	37	1	73	1	ALB	4	74270115	Missense_Mutation	SNP	G	TCGA-AK-3465-01A-01D-0966-08		74270115	116884161	8	5048											
FNIP1	96459	broad.mit.edu	37	5	131013435	131013435	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	-	131013435	C	-	131013435	7	5	79	1	0	1	0	1	0	0	0	0	5982	739	26	0	2044	0	FNIP1	5	131013435	Frame_Shift_Del	DEL	C	TCGA-AK-3465-01A-01D-0966-08		131013435	49901825	9	5049											
PCDHGB6	56100	broad.mit.edu	37	5	140789895	140789895	+	Missense_Mutation	SNP	T	T	A			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	140789895	T	A	140789895	3	1	79	1	0	0	0	0	1	0	0	0	11574	1580	55	5	2128	5	PCDHGB6	5	140789895	Missense_Mutation	SNP	T	TCGA-AK-3465-01A-01D-0966-08	9776460	140789895	40125365	10	5050											
CD109	135228	broad.mit.edu	37	6	74440152	74440152	+	Missense_Mutation	SNP	G	G	A	rs111900767		TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	74440152	G	A	74440152	3	1	79	1	0	0	0	0	1	0	0	0	2965	1087	38	1	376	1	CD109	6	74440152	Missense_Mutation	SNP	G	TCGA-AK-3465-01A-01D-0966-08		74440152	96674915	11	5051											
WDR27	253769	broad.mit.edu	37	6	170033136	170033136	+	Missense_Mutation	SNP	C	C	A			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	170033136	C	A	170033136	3	1	79	1	0	0	0	0	1	0	0	0	17296	854	30	4	463	4	WDR27	6	170033136	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08	95592984	170033136	1081931	12	5052											
RADIL	55698	broad.mit.edu	37	7	4841532	4841532	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	4841532	G	A	4841532	3	1	79	1	0	0	0	0	1	0	0	0	13010	1116	39	1	649	1	RADIL	7	4841532	Missense_Mutation	SNP	G	TCGA-AK-3465-01A-01D-0966-08		4841532	154297131	13	5053											
CRCP	27297	broad.mit.edu	37	7	65579857	65579857	+	Missense_Mutation	SNP	C	C	G			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	G	65579857	C	G	65579857	3	3	79	1	0	0	0	0	1	0	0	0	3854	796	28	4	44	4	CRCP	7	65579857	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08	60738325	65579857	93558806	14	5054											
PLXNA4	91584	broad.mit.edu	37	7	131913110	131913110	+	Missense_Mutation	SNP	C	C	T	rs143690954	by1000genomes	TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	131913110	C	T	131913110	3	4	79	1	0	0	0	0	1	0	0	0	12129	536	19	1	4069	1	PLXNA4	7	131913110	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08	66333253	131913110	27225553	15	5055											
LRRC14	9684	broad.mit.edu	37	8	145746499	145746502	+	Frame_Shift_Del	DEL	TGAG	TGAG	-			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	-	145746502	TGAG	-	145746499	7	5	79	1	0	1	0	1	0	0	0	0	8975	1567	55	0	1129	0	LRRC14	8	145746499	Frame_Shift_Del	DEL	TGAG	TCGA-AK-3465-01A-01D-0966-08		145746499	617523	16	5056											
ITIH2	3698	broad.mit.edu	37	10	7751105	7751105	+	Missense_Mutation	SNP	G	G	A	rs142420238		TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	7751105	G	A	7751105	3	1	79	1	0	0	0	0	1	0	0	0	7911	1145	40	1	327	1	ITIH2	10	7751105	Missense_Mutation	SNP	G	TCGA-AK-3465-01A-01D-0966-08		7751105	127783642	17	5057											
CCKBR	887	broad.mit.edu	37	11	6292065	6292065	+	Silent	SNP	C	C	A	rs1800843	by1000genomes	TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	6292065	C	A	6292065	2	1	79	1	0	0	0	0	0	0	0	1	2883	783	27	4		4	CCKBR	11	6292065	Silent	SNP	C	TCGA-AK-3465-01A-01D-0966-08		6292065	128714451	18	5058											
OR6Q1	219952	broad.mit.edu	37	11	57798663	57798663	+	Missense_Mutation	SNP	T	T	G			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	G	57798663	T	G	57798663	3	3	79	1	0	0	0	0	1	0	0	0	11215	1696	59	5	241	5	OR6Q1	11	57798663	Missense_Mutation	SNP	T	TCGA-AK-3465-01A-01D-0966-08	51506598	57798663	77207853	19	5059											
SCYL1	57410	broad.mit.edu	37	11	65293511	65293511	+	Silent	SNP	C	C	T			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	65293511	C	T	65293511	2	4	79	1	0	0	0	0	0	0	0	1	13960	874	31	1		1	SCYL1	11	65293511	Silent	SNP	C	TCGA-AK-3465-01A-01D-0966-08	7494848	65293511	69713005	20	5060											
PRPF40B	25766	broad.mit.edu	37	12	50025308	50025308	+	Missense_Mutation	SNP	C	C	T	rs149751647		TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	50025308	C	T	50025308	3	4	79	1	0	0	0	0	1	0	0	0	12582	768	27	1	149	1	PRPF40B	12	50025308	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08		50025308	83826587	21	5061											
NOS1	4842	broad.mit.edu	37	12	117665398	117665398	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	117665398	C	T	117665398	3	4	79	1	0	0	0	0	1	0	0	0	10548	536	19	1	878	1	NOS1	12	117665398	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08	67640090	117665398	16186497	22	5062											
TGM5	9333	broad.mit.edu	37	15	43544964	43544964	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	43544964	C	T	43544964	3	4	79	1	0	0	0	0	1	0	0	0	15845	478	17	2	1339	2	TGM5	15	43544964	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08		43544964	58986428	23	5063											
SSTR5	6755	broad.mit.edu	37	16	1129327	1129327	+	Silent	SNP	G	G	A	rs141899937		TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	1129327	G	A	1129327	2	1	79	1	0	0	0	0	0	0	0	1	15213	1074	38	1		1	SSTR5	16	1129327	Silent	SNP	G	TCGA-AK-3465-01A-01D-0966-08		1129327	89225426	24	5064											
CIITA	4261	broad.mit.edu	37	16	11001311	11001311	+	Silent	SNP	C	C	T			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	11001311	C	T	11001311	2	4	79	1	0	0	0	0	0	0	0	1	3430	639	23	1		1	CIITA	16	11001311	Silent	SNP	C	TCGA-AK-3465-01A-01D-0966-08	9871984	11001311	79353442	25	5065											
IL12RB1	3594	broad.mit.edu	37	19	18173055	18173055	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	18173055	C	T	18173055	3	4	79	1	0	0	0	0	1	0	0	0	7633	768	27	1	353	1	IL12RB1	19	18173055	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08		18173055	40955928	26	5066											
SIPA1L3	23094	broad.mit.edu	37	19	38692610	38692610	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	38692610	C	T	38692610	3	4	79	1	0	0	0	0	1	0	0	0	14344	652	23	1	5163	1	SIPA1L3	19	38692610	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08	20519555	38692610	20436373	27	5067											
SAMD4B	55095	broad.mit.edu	37	19	39868378	39868378	+	Missense_Mutation	SNP	C	C	T			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	39868378	C	T	39868378	3	4	79	1	0	0	0	0	1	0	0	0	13835	594	21	2	1380	2	SAMD4B	19	39868378	Missense_Mutation	SNP	C	TCGA-AK-3465-01A-01D-0966-08	1175768	39868378	19260605	28	5068											
ATP1A3	478	broad.mit.edu	37	19	42492233	42492233	+	Missense_Mutation	SNP	G	G	A			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	42492233	G	A	42492233	3	1	79	1	0	0	0	0	1	0	0	0	1130	1145	40	1	2909	1	ATP1A3	19	42492233	Missense_Mutation	SNP	G	TCGA-AK-3465-01A-01D-0966-08	2623855	42492233	16636750	29	5069											
TMC2	117532	broad.mit.edu	37	20	2592911	2592911	+	Silent	SNP	C	C	T	rs144876435	byFrequency	TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	2592911	C	T	2592911	2	4	79	1	0	0	0	0	0	0	0	1	15997	535	19	1		1	TMC2	20	2592911	Silent	SNP	C	TCGA-AK-3465-01A-01D-0966-08		2592911	60432609	30	5070											
ASCC2	84164	broad.mit.edu	37	22	30189476	30189476	+	Missense_Mutation	SNP	G	G	T			TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	T	30189476	G	T	30189476	3	4	79	1	0	0	0	0	1	0	0	0	1032	1203	42	4	497	4	ASCC2	22	30189476	Missense_Mutation	SNP	G	TCGA-AK-3465-01A-01D-0966-08		30189476	21115090	31	5071											
ELFN2	114794	broad.mit.edu	37	22	37770867	37770867	+	Silent	SNP	G	G	A	rs149957183		TCGA-AK-3465-01A-01D-0966-08	TCGA-AK-3465-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c54f90a1-01c2-4cde-959e-bf3219673495	2ee3db04-cb72-4a8a-a66a-bd5784f1e01f	A	37770867	G	A	37770867	2	1	79	1	0	0	0	0	0	0	0	1	5060	1136	40	1		1	ELFN2	22	37770867	Silent	SNP	G	TCGA-AK-3465-01A-01D-0966-08	7581391	37770867	13533699	32	5072											
PAFAH2	5051	hgsc.bcm.edu	37	1	26301009	26301009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	26301009	T	C	26301009	3	2	80	1	0	0	0	0	1	0	0	0	11394	1396	49	3	299	3	PAFAH2	1	26301009	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		26301009	222949612	1	5073											
UBXN11	91544	hgsc.bcm.edu	37	1	26608825	26608825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	26608825	T	C	26608825	3	2	80	1	0	0	0	0	1	0	0	0	16925	1580	55	3	38	3	UBXN11	1	26608825	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	307816	26608825	222641796	2	5074											
BAI2	576	hgsc.bcm.edu	37	1	32210251	32210251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	32210251	G	C	32210251	3	2	80	1	0	0	0	0	1	0	0	0	1299	1377	48	4	3953	4	BAI2	1	32210251	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	5601426	32210251	217040370	3	5075											
ZMPSTE24	10269	broad.mit.edu	37	1	40733505	40733505	+	Silent	SNP	A	A	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	40733505	A	G	40733505	2	3	80	1	0	0	0	0	0	0	0	1	17710	262	10	3		3	ZMPSTE24	1	40733505	Silent	SNP	A	TCGA-AL-3466-01A-01D-1252-08	8523254	40733505	208517116	4	5076											
LRP8	7804	ucsc.edu	37	1	53723084	53723084	+	Silent	SNP	T	T	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	53723084	T	G	53723084	2	3	80	1	0	0	0	0	0	0	0	1	8970	1625	57	5		5	LRP8	1	53723084	Silent	SNP	T	TCGA-AL-3466-01A-01D-1252-08	12989579	53723084	195527537	5	5077											
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	100572938	100572938	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	100572938	C	G	100572938	3	3	80	1	0	0	0	0	1	0	0	0	13863	922	32	4	683	4	SASS6	1	100572938	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	46849854	100572938	148677683	6	5078											
TARS2	80222	broad.mit.edu	37	1	150471422	150471422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	150471422	C	T	150471422	3	4	80	1	0	0	0	0	1	0	0	0	15572	739	26	2	1497	2	TARS2	1	150471422	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	49898484	150471422	98779199	7	5079											
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152127802	152127802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	152127802	T	C	152127802	3	2	80	1	0	0	0	0	1	0	0	0	13677	1628	57	3	585	3	RPTN	1	152127802	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	1656380	152127802	97122819	8	5080											
NUP210L	91181	broad.mit.edu	37	1	153991451	153991451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	153991451	C	A	153991451	3	1	80	1	0	0	0	0	1	0	0	0	10768	826	29	4	1087	4	NUP210L	1	153991451	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	1863649	153991451	95259170	9	5081											
GBA	2629	ucsc.edu	37	1	155206133	155206133	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	155206133	A	C	155206133	3	2	80	1	0	0	0	0	1	0	0	0	6273	14	1	5	499	5	GBA	1	155206133	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	1214682	155206133	94044488	10	5082											
FAM129A	116496	hgsc.bcm.edu;broad.mit.edu	37	1	184767228	184767228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	184767228	C	A	184767228	3	1	80	1	0	0	0	0	1	0	0	0	5440	826	29	4	1143	4	FAM129A	1	184767228	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	29561095	184767228	64483393	11	5083											
TPR	7175	broad.mit.edu	37	1	186327733	186327735	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	-	186327735	GAT	-	186327733	7	5	80	1	0	1	0	1	0	0	0	0	16428	942	33	0	5808	0	TPR	1	186327733	In_Frame_Del	DEL	GAT	TCGA-AL-3466-01A-01D-1252-08	1560505	186327733	62922888	12	5084											
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214557259	214557259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	214557259	T	C	214557259	3	2	80	1	0	0	0	0	1	0	0	0	12794	1783	62	3	1652	3	PTPN14	1	214557259	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	28229526	214557259	34693362	13	5085											
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	234458910	234458910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	234458910	A	T	234458910	3	4	80	1	0	0	0	0	1	0	0	0	14603	304	11	5	1424	5	SLC35F3	1	234458910	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	19901651	234458910	14791711	14	5086											
RAB11FIP5	26056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73315269	73315269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	73315269	C	T	73315269	3	4	80	1	0	0	0	0	1	0	0	0	12910	739	26	2	496	2	RAB11FIP5	2	73315269	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08		73315269	169884104	15	5087											
LCT	3938	broad.mit.edu	37	2	136575259	136575259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	136575259	G	C	136575259	3	2	80	1	0	0	0	0	1	0	0	0	8700	933	33	4	4472	4	LCT	2	136575259	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	63259990	136575259	106624114	16	5088											
SCN3A	6328	broad.mit.edu	37	2	166010994	166010994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	166010994	C	T	166010994	3	4	80	1	0	0	0	0	1	0	0	0	13931	893	31	1	4726	1	SCN3A	2	166010994	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	29435735	166010994	77188379	17	5089											
TTC30B	150737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178416990	178416990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	178416990	C	T	178416990	3	4	80	1	0	0	0	0	1	0	0	0	16711	632	22	2	1499	2	TTC30B	2	178416990	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	12405996	178416990	64782383	18	5090											
TTN	7273	broad.mit.edu	37	2	179415765	179415765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	179415765	G	A	179415765	3	1	80	1	0	0	0	0	1	0	0	0	16747	1319	46	2	16594	2	TTN	2	179415765	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	998775	179415765	63783608	19	5091											
TTLL4	9654	broad.mit.edu	37	2	219612347	219612347	+	Silent	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	219612347	C	T	219612347	2	4	80	1	0	0	0	0	0	0	0	1	16741	767	27	1		1	TTLL4	2	219612347	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08	40196582	219612347	23587026	20	5092											
FAM124B	79843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225266233	225266233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	225266233	C	T	225266233	3	4	80	1	0	0	0	0	1	0	0	0	5430	536	19	1	1213	1	FAM124B	2	225266233	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	5653886	225266233	17933140	21	5093											
COL6A3	1293	bcgsc.ca	37	2	238244962	238244962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	238244962	C	G	238244962	3	3	80	1	0	0	0	0	1	0	0	0	3703	594	21	4	772	4	COL6A3	2	238244962	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	12978729	238244962	4954411	22	5094											
EXOSC7	23016	ucsc.edu	37	3	45049021	45049021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	45049021	T	G	45049021	3	3	80	1	0	0	0	0	1	0	0	0	5321	1696	59	5	751	5	EXOSC7	3	45049021	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		45049021	152973409	23	5095											
PFKFB4	5210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48577177	48577177	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	48577177	C	A	48577177	4	1	80	1	0	0	0	0	0	1	0	0	11770	922	32	4	1043	4	PFKFB4	3	48577177	Nonsense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	3528156	48577177	149445253	24	5096											
NPRL2	10641	ucsc.edu	37	3	50385070	50385070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	50385070	T	A	50385070	3	1	80	1	0	0	0	0	1	0	0	0	10604	1838	64	5	36	5	NPRL2	3	50385070	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	1807893	50385070	147637360	25	5097											
TKT	7086	hgsc.bcm.edu;broad.mit.edu	37	3	53264627	53264627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	53264627	C	T	53264627	3	4	80	1	0	0	0	0	1	0	0	0	15946	768	27	1	946	1	TKT	3	53264627	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	2879557	53264627	144757803	26	5098											
PPP4R2	151987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	73110176	73110176	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	73110176	T	A	73110176	3	1	80	1	0	0	0	0	1	0	0	0	12414	1461	51	5	402	5	PPP4R2	3	73110176	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	19845549	73110176	124912254	27	5099											
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151072983	151072983	+	Missense_Mutation	SNP	C	C	T	rs200848773	alternate_allele	TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	151072983	C	T	151072983	3	4	80	1	0	0	0	0	1	0	0	0	9436	565	20	2	2430	2	MED12L	3	151072983	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	77962807	151072983	46949447	28	5100											
SLC6A18	348932	broad.mit.edu	37	5	1244416	1244416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	1244416	C	T	1244416	3	4	80	1	0	0	0	0	1	0	0	0	14694	739	26	2	1462	2	SLC6A18	5	1244416	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08		1244416	179670844	29	5101											
HAVCR1	26762	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	156482352	156482362	+	Frame_Shift_Del	DEL	AATAGCTTATA	AATAGCTTATA	-	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	AATAGCTTATA	AATAGCTTATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	-	156482362	AATAGCTTATA	-	156482352	7	5	80	1	0	1	0	1	0	0	0	0	6980	131	5	0	883	0	HAVCR1	5	156482352	Frame_Shift_Del	DEL	AATAGCTTATA	TCGA-AL-3466-01A-01D-1252-08	155237936	156482352	24432908	30	5102											
NSD1	64324	broad.mit.edu	37	5	176710903	176710903	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	-	176710903	T	-	176710903	7	5	80	1	0	1	0	1	0	0	0	0	10676	1609	56	0	6199	0	NSD1	5	176710903	Frame_Shift_Del	DEL	T	TCGA-AL-3466-01A-01D-1252-08	20228551	176710903	4204357	31	5103											
HIST1H2BL	8340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27775403	27775403	+	Silent	SNP	C	C	T	rs141648774	alternate_allele	TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	27775403	C	T	27775403	2	4	80	1	0	0	0	0	0	0	0	1	7158	912	32	2		2	HIST1H2BL	6	27775403	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08		27775403	143339664	32	5104											
HLA-C	3107	hgsc.bcm.edu	37	6	31239420	31239420	+	Missense_Mutation	SNP	A	A	T	rs41550619		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	31239420	A	T	31239420	3	4	80	1	0	0	0	0	1	0	0	0	7204	159	6	5	829	5	HLA-C	6	31239420	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	3464017	31239420	139875647	33	5105											
LY6G6F	259215	broad.mit.edu	37	6	31675742	31675742	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	31675742	G	A	31675742	4	1	80	1	0	0	0	0	0	1	0	0	9103	1212	42	2	487	2	LY6G6F	6	31675742	Nonsense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	436322	31675742	139439325	34	5106											
HLA-DRB5	3127	hgsc.bcm.edu	37	6	32489853	32489853	+	Silent	SNP	A	A	G	rs78961241	byfrequency;alternate_allele	TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	32489853	A	G	32489853	2	3	80	1	0	0	0	0	0	0	0	1	7216	69	3	3		3	HLA-DRB5	6	32489853	Silent	SNP	A	TCGA-AL-3466-01A-01D-1252-08	814111	32489853	138625214	35	5107											
DEFB112	245915	hgsc.bcm.edu	37	6	50011485	50011485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	50011485	T	C	50011485	3	2	80	1	0	0	0	0	1	0	0	0	4403	1522	53	3	199	3	DEFB112	6	50011485	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	17521632	50011485	121103582	36	5108											
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150698913	150698913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	150698913	G	A	150698913	3	1	80	1	0	0	0	0	1	0	0	0	10551	1145	40	1	1553	1	NOS3	7	150698913	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08		150698913	8439750	37	5109											
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	107752622	107752622	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	107752622	T	A	107752622	3	1	80	1	0	0	0	0	1	0	0	0	11341	1754	61	5	2383	5	OXR1	8	107752622	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		107752622	38611400	38	5110											
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117139726	117139726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	117139726	T	C	117139726	3	2	80	1	0	0	0	0	1	0	0	0	463	1667	58	3	4038	3	AKNA	9	117139726	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		117139726	24073705	39	5111											
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	121930244	121930244	+	Silent	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	121930244	C	T	121930244	2	4	80	1	0	0	0	0	0	0	0	1	4249	639	23	1		1	DBC1	9	121930244	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08	4790518	121930244	19283187	40	5112											
GTPBP4	23560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	1043230	1043230	+	Silent	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	1043230	G	A	1043230	2	1	80	1	0	0	0	0	0	0	0	1	6889	1020	36	2		2	GTPBP4	10	1043230	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08		1043230	134491517	41	5113											
PFKP	5214	ucsc.edu	37	10	3172124	3172124	+	Silent	SNP	A	A	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	3172124	A	G	3172124	2	3	80	1	0	0	0	0	0	0	0	1	11773	291	11	3		3	PFKP	10	3172124	Silent	SNP	A	TCGA-AL-3466-01A-01D-1252-08	2128894	3172124	132362623	42	5114											
MUC5B	727897	broad.mit.edu	37	11	1258389	1258389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	1258389	T	G	1258389	3	3	80	1	0	0	0	0	1	0	0	0	9986	1551	54	5	3399	5	MUC5B	11	1258389	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		1258389	133748127	43	5115											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17190402	17190402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	17190402	G	A	17190402	3	1	80	1	0	0	0	0	1	0	0	0	11916	1294	45	2	4301	2	PIK3C2A	11	17190402	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	15932013	17190402	117816114	44	5116											
MS4A12	54860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	60268545	60268545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	60268545	C	T	60268545	3	4	80	1	0	0	0	0	1	0	0	0	9863	710	25	2	310	2	MS4A12	11	60268545	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	43078143	60268545	74737971	45	5117											
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61026692	61026692	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	61026692	C	A	61026692	4	1	80	1	0	0	0	0	0	1	0	0	17257	835	29	4	548	4	VWCE	11	61026692	Nonsense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	758147	61026692	73979824	46	5118											
AHNAK	79026	ucsc.edu	37	11	62295728	62295728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	62295728	G	A	62295728	3	1	80	1	0	0	0	0	1	0	0	0	414	1232	43	2	11631	2	AHNAK	11	62295728	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	1269036	62295728	72710788	47	5119											
PCSK7	9159	hgsc.bcm.edu	37	11	117079626	117079626	+	Missense_Mutation	SNP	G	G	C	rs36047333	bycluster	TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	117079626	G	C	117079626	3	2	80	1	0	0	0	0	1	0	0	0	11612	1116	39	4	699	4	PCSK7	11	117079626	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	54783898	117079626	17926890	48	5120											
ESAM	90952	broad.mit.edu	37	11	124624584	124624584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	124624584	T	C	124624584	3	2	80	1	0	0	0	0	1	0	0	0	5249	1493	52	3	501	3	ESAM	11	124624584	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	7544958	124624584	10381932	49	5121											
M6PR	4074	hgsc.bcm.edu;broad.mit.edu	37	12	9096395	9096395	+	Splice_Site	SNP	A	A	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	9096395	A	G	9096395	5	3	80	1	0	0	0	0	0	0	1	0	9147	173	6	3	394	3	M6PR	12	9096395	Splice_Site	SNP	A	TCGA-AL-3466-01A-01D-1252-08		9096395	124755500	50	5122											
HEATR5A	25938	ucsc.edu	37	14	31782236	31782236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	31782236	G	A	31782236	3	1	80	1	0	0	0	0	1	0	0	0	7038	1319	46	2	1797	2	HEATR5A	14	31782236	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08		31782236	75567304	51	5123											
AHNAK2	113146	broad.mit.edu	37	14	105412623	105412623	+	Silent	SNP	A	A	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	105412623	A	G	105412623	2	3	80	1	0	0	0	0	0	0	0	1	415	175	7	3		3	AHNAK2	14	105412623	Silent	SNP	A	TCGA-AL-3466-01A-01D-1252-08	73630387	105412623	1936917	52	5124											
MEIS2	4212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	37184626	37184626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	37184626	C	A	37184626	3	1	80	1	0	0	0	0	1	0	0	0	9475	680	24	4	255	4	MEIS2	15	37184626	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08		37184626	65346766	53	5125											
RHBDL1	9028	hgsc.bcm.edu	37	16	726121	726121	+	Missense_Mutation	SNP	G	G	C	rs200482219		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	726121	G	C	726121	3	2	80	1	0	0	0	0	1	0	0	0	13334	1232	43	4	22	4	RHBDL1	16	726121	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08		726121	89628632	54	5126											
TNP2	7142	broad.mit.edu	37	16	11362955	11362955	+	Silent	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	11362955	G	A	11362955	2	1	80	1	0	0	0	0	0	0	0	1	16346	1194	42	2		2	TNP2	16	11362955	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08	10636834	11362955	78991798	55	5127											
B3GNT9	84752	hgsc.bcm.edu	37	16	67183948	67183948	+	Silent	SNP	C	C	T	rs146483793		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	67183948	C	T	67183948	2	4	80	1	0	0	0	0	0	0	0	1	1264	610	22	2		2	B3GNT9	16	67183948	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08	55820993	67183948	23170805	56	5128											
CRISPLD2	83716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	84940197	84940197	+	Silent	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	84940197	G	A	84940197	2	1	80	1	0	0	0	0	0	0	0	1	3885	1335	47	2		2	CRISPLD2	16	84940197	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08	17756249	84940197	5414556	57	5129											
ACACA	31	ucsc.edu	37	17	35487095	35487095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	35487095	T	C	35487095	3	2	80	1	0	0	0	0	1	0	0	0	106	1580	55	3	1466	3	ACACA	17	35487095	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		35487095	45708115	58	5130											
PLEKHM1	9842	broad.mit.edu	37	17	43531102	43531102	+	Missense_Mutation	SNP	A	A	G	rs2684498		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	43531102	A	G	43531102	3	3	80	1	0	0	0	0	1	0	0	0	12087	275	10	3	1078	3	PLEKHM1	17	43531102	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	8044007	43531102	37664108	59	5131											
NGFR	4804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47588006	47588006	+	Silent	SNP	G	G	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	47588006	G	T	47588006	2	4	80	1	0	0	0	0	0	0	0	1	10403	1335	47	4		4	NGFR	17	47588006	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08	4056904	47588006	33607204	60	5132											
CA10	56934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	49710848	49710848	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	49710848	A	C	49710848	3	2	80	1	0	0	0	0	1	0	0	0	2513	72	3	5	41	5	CA10	17	49710848	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	2122842	49710848	31484362	61	5133											
OR4D1	26689	broad.mit.edu	37	17	56232804	56232804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	56232804	G	A	56232804	3	1	80	1	0	0	0	0	1	0	0	0	11060	1319	46	2	292	2	OR4D1	17	56232804	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	6521956	56232804	24962406	62	5134											
COG1	9382	broad.mit.edu	37	17	71204538	71204538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	71204538	C	T	71204538	3	4	80	1	0	0	0	0	1	0	0	0	3659	536	19	1	2945	1	COG1	17	71204538	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	14971734	71204538	9990672	63	5135											
TMC8	147138	broad.mit.edu	37	17	76134728	76134757	+	In_Frame_Del	DEL	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	-	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	-	76134757	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	-	76134728	7	5	80	1	0	1	0	1	0	0	0	0	16003	1203	42	0	1788	0	TMC8	17	76134728	In_Frame_Del	DEL	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	TCGA-AL-3466-01A-01D-1252-08	4930190	76134728	5060482	64	5136											
OLFM2	93145	ucsc.edu	37	19	9968019	9968019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	9968019	A	G	9968019	3	3	80	1	0	0	0	0	1	0	0	0	10860	217	8	3	876	3	OLFM2	19	9968019	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08		9968019	49160964	65	5137											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	23926850	23926850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	23926850	G	A	23926850	3	1	80	1	0	0	0	0	1	0	0	0	18100	1029	36	2	439	2	ZNF681	19	23926850	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	13958831	23926850	35202133	66	5138											
RYR1	6261	hgsc.bcm.edu	37	19	38943527	38943527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	G	38943527	A	G	38943527	3	3	80	1	0	0	0	0	1	0	0	0	13781	304	11	3	1363	3	RYR1	19	38943527	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	15016677	38943527	20185456	67	5139											
ADCK4	79934	broad.mit.edu	37	19	41198098	41198098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	41198098	C	T	41198098	3	4	80	1	0	0	0	0	1	0	0	0	290	739	26	2	161	2	ADCK4	19	41198098	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	2254571	41198098	17930885	68	5140											
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	48945880	T	C	48945880	2	2	80	1	0	0	0	0	0	0	0	1	6789	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-AL-3466-01A-01D-1252-08	7747782	48945880	10183103	69	5141											
GFRA4	64096	hgsc.bcm.edu	37	20	3641542	3641542	+	Silent	SNP	G	G	A	rs58634535		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	3641542	G	A	3641542	2	1	80	1	0	0	0	0	0	0	0	1	6357	929	33	2		2	GFRA4	20	3641542	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08		3641542	59383978	70	5142											
THOC5	8563	ucsc.edu	37	22	29924124	29924124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	A	29924124	G	A	29924124	3	1	80	1	0	0	0	0	1	0	0	0	15880	1145	40	1	1082	1	THOC5	22	29924124	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08		29924124	21380442	71	5143											
NLGN3	54413	broad.mit.edu	37	X	70387072	70387072	+	Silent	SNP	C	C	T	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	T	70387072	C	T	70387072	2	4	80	1	0	0	0	0	0	0	0	1	10470	726	26	2		2	NLGN3	23	70387072	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08		70387072	84883488	72	5144											
HDAC8	55869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71681922	71681922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	C	71681922	G	C	71681922	3	2	80	1	0	0	0	0	1	0	0	0	7020	1066	37	4	208	4	HDAC8	23	71681922	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	1294850	71681922	83588638	73	5145											
KIF1B	23095	hgsc.bcm.edu	37	1	10336447	10336447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	G	10336447	A	G	10336447	3	3	81	1	0	0	0	0	1	0	0	0	8291	304	11	3	1047	3	KIF1B	1	10336447	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08		10336447	238914174	1	5146											
MIER1	57708	hgsc.bcm.edu	37	1	67394625	67394625	+	Silent	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	67394625	T	C	67394625	2	2	81	1	0	0	0	0	0	0	0	1	9587	1538	54	3		3	MIER1	1	67394625	Silent	SNP	T	TCGA-AL-3467-01A-01D-1252-08	57058178	67394625	181855996	2	5147											
ARHGAP29	9411	broad.mit.edu	37	1	94639430	94639431	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	A	94639431	-	A	94639430	7	5	81	1	0	1	1	0	0	0	0	0	878	478	17	0	8	0	ARHGAP29	1	94639430	Frame_Shift_Ins	INS	-	TCGA-AL-3467-01A-01D-1252-08	27244805	94639430	154611191	3	5148											
INTS7	25896	broad.mit.edu	37	1	212148638	212148638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	G	212148638	A	G	212148638	3	3	81	1	0	0	0	0	1	0	0	0	7790	420	15	3	1235	3	INTS7	1	212148638	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08	117509208	212148638	37101983	4	5149											
THSD7B	80731	broad.mit.edu	37	2	138400116	138400116	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	T	138400116	C	T	138400116	2	4	81	1	0	0	0	0	0	0	0	1	15892	747	26	2		2	THSD7B	2	138400116	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08		138400116	104799257	5	5150											
CACNB4	785	hgsc.bcm.edu	37	2	152727361	152727361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	152727361	T	C	152727361	3	2	81	1	0	0	0	0	1	0	0	0	2557	1850	64	3	981	3	CACNB4	2	152727361	Missense_Mutation	SNP	T	TCGA-AL-3467-01A-01D-1252-08	14327245	152727361	90472012	6	5151											
TMEFF2	23671	broad.mit.edu	37	2	193056717	193056717	+	Splice_Site	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	193056717	T	C	193056717	5	2	81	1	0	0	0	0	0	0	1	0	16026	1565	54	3	989	3	TMEFF2	2	193056717	Splice_Site	SNP	T	TCGA-AL-3467-01A-01D-1252-08	40329356	193056717	50142656	7	5152											
CCDC108	255101	ucsc.edu	37	2	219868976	219868976	+	Silent	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	219868976	T	C	219868976	2	2	81	1	0	0	0	0	0	0	0	1	2745	1567	55	3		3	CCDC108	2	219868976	Silent	SNP	T	TCGA-AL-3467-01A-01D-1252-08	26812259	219868976	23330397	8	5153											
AGAP1	116987	ucsc.edu	37	2	237028963	237028963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	A	237028963	G	A	237028963	3	1	81	1	0	0	0	0	1	0	0	0	366	1203	42	2	2308	2	AGAP1	2	237028963	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	17159987	237028963	6170410	9	5154											
PRRC1	133619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	126860252	126860252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	T	126860252	G	T	126860252	3	4	81	1	0	0	0	0	1	0	0	0	12614	1377	48	4	139	4	PRRC1	5	126860252	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08		126860252	54055008	10	5155											
BRD8	10902	broad.mit.edu	37	5	137506598	137506598	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	T	137506598	C	T	137506598	2	4	81	1	0	0	0	0	0	0	0	1	1508	726	26	2		2	BRD8	5	137506598	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08	10646346	137506598	43408662	11	5156											
PCDHA4	56144	broad.mit.edu	37	5	140187880	140187880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	A	140187880	G	A	140187880	3	1	81	1	0	0	0	0	1	0	0	0	11533	1087	38	1	1110	1	PCDHA4	5	140187880	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	2681282	140187880	40727380	12	5157											
KIAA0141	9812	broad.mit.edu	37	5	141304998	141304998	+	Missense_Mutation	SNP	C	C	T	rs148625091		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	T	141304998	C	T	141304998	3	4	81	1	0	0	0	0	1	0	0	0	8163	536	19	1	180	1	KIAA0141	5	141304998	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08	1117118	141304998	39610262	13	5158											
AMD1	262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111208734	111208734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	G	111208734	A	G	111208734	3	3	81	1	0	0	0	0	1	0	0	0	566	333	12	3	143	3	AMD1	6	111208734	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08		111208734	59906333	14	5159											
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	17836512	17836512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	17836512	T	C	17836512	3	2	81	1	0	0	0	0	1	0	0	0	14897	1435	50	3	317	3	SNX13	7	17836512	Missense_Mutation	SNP	T	TCGA-AL-3467-01A-01D-1252-08		17836512	141302151	15	5160											
MUC17	140453	broad.mit.edu	37	7	100676555	100676555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	T	100676555	C	T	100676555	3	4	81	1	0	0	0	0	1	0	0	0	9981	739	26	2	1868	2	MUC17	7	100676555	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08	82840043	100676555	58462108	16	5161											
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913227	bycluster	TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	T	140453136	A	T	140453136	3	4	81	1	0	0	0	0	1	0	0	0	1498	159	6	5	517	5	BRAF	7	140453136	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08	39776581	140453136	18685527	17	5162											
GYLTL1B	120071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	45948105	45948105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	45948105	A	C	45948105	3	2	81	1	0	0	0	0	1	0	0	0	6914	304	11	5	1151	5	GYLTL1B	11	45948105	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08		45948105	89058411	18	5163											
CORO1B	57175	broad.mit.edu	37	11	67206237	67206237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	67206237	G	C	67206237	3	2	81	1	0	0	0	0	1	0	0	0	3756	1203	42	4	228	4	CORO1B	11	67206237	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	21258132	67206237	67800279	19	5164											
OR8D1	283159	hgsc.bcm.edu;broad.mit.edu	37	11	124180427	124180427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	A	124180427	G	A	124180427	3	1	81	1	0	0	0	0	1	0	0	0	11238	1232	43	2	693	2	OR8D1	11	124180427	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	56974190	124180427	10826089	20	5165											
KLRB1	3820	broad.mit.edu	37	12	9754098	9754098	+	Silent	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	9754098	T	C	9754098	2	2	81	1	0	0	0	0	0	0	0	1	8421	1594	55	3		3	KLRB1	12	9754098	Silent	SNP	T	TCGA-AL-3467-01A-01D-1252-08		9754098	124097797	21	5166											
LDHB	3945	broad.mit.edu	37	12	21788543	21788543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	21788543	T	C	21788543	3	2	81	1	0	0	0	0	1	0	0	0	8708	1551	54	3	70	3	LDHB	12	21788543	Missense_Mutation	SNP	T	TCGA-AL-3467-01A-01D-1252-08	12034445	21788543	112063352	22	5167											
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24544466	24544466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	A	24544466	C	A	24544466	3	1	81	1	0	0	0	0	1	0	0	0	3818	536	19	4	784	4	CPNE6	14	24544466	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08		24544466	82805074	23	5168											
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	34263109	34263109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	G	34263109	A	G	34263109	3	3	81	1	0	0	0	0	1	0	0	0	10571	101	4	3	1253	3	NPAS3	14	34263109	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08	9718643	34263109	73086431	24	5169											
C14orf142	84520	broad.mit.edu	37	14	93670051	93670051	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	T	93670051	C	T	93670051	2	4	81	1	0	0	0	0	0	0	0	1	1749	726	26	2		2	C14orf142	14	93670051	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08	59406942	93670051	13679489	25	5170											
PIGB	9488	hgsc.bcm.edu	37	15	55626159	55626159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	A	55626159	G	A	55626159	3	1	81	1	0	0	0	0	1	0	0	0	11892	943	33	2	770	2	PIGB	15	55626159	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08		55626159	46905233	26	5171											
GCOM1	145781	broad.mit.edu	37	15	57922023	57922023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	G	57922023	C	G	57922023	3	3	81	1	0	0	0	0	1	0	0	0	6311	711	25	4	671	4	GCOM1	15	57922023	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08	2295864	57922023	44609369	27	5172											
ZSCAN10	84891	hgsc.bcm.edu	37	16	3142579	3142579	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	T	3142579	C	T	3142579	2	4	81	1	0	0	0	0	0	0	0	1	18239	680	24	2		2	ZSCAN10	16	3142579	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08		3142579	87212174	28	5173											
SRCAP	10847	hgsc.bcm.edu	37	16	30745323	30745323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	G	30745323	C	G	30745323	3	3	81	1	0	0	0	0	1	0	0	0	15147	825	29	4	6713	4	SRCAP	16	30745323	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08	27602744	30745323	59609430	29	5174											
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	61891030	61891031	+	Missense_Mutation	DNP	AG	AG	CT	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	CT	61891031	AG	CT	61891030	3	2	81	1	0	0	0	0	1	0	0	0	3118	175	7	5	1775	5	CDH8	16	61891030	Missense_Mutation	DNP	AG	TCGA-AL-3467-01A-01D-1252-08	31145707	61891030	28463723	30	5175											
ZC3H18	124245	broad.mit.edu	37	16	88694029	88694029	+	Splice_Site	SNP	G	G	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	88694029	G	C	88694029	5	2	81	1	0	0	0	0	0	0	1	0	17580	1014	35	4	2158	4	ZC3H18	16	88694029	Splice_Site	SNP	G	TCGA-AL-3467-01A-01D-1252-08	26802999	88694029	1660724	31	5176											
HIC1	3090	hgsc.bcm.edu	37	17	1960939	1960939	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	G	1960939	C	G	1960939	3	3	81	1	0	0	0	0	1	0	0	0	7108	680	24	4	1018	4	HIC1	17	1960939	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08		1960939	79234271	32	5177											
ZMYND15	84225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4645266	4645266	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	-	4645266	G	-	4645266	7	5	81	1	0	1	0	1	0	0	0	0	17720	1116	39	0	894	0	ZMYND15	17	4645266	Frame_Shift_Del	DEL	G	TCGA-AL-3467-01A-01D-1252-08	2684327	4645266	76549944	33	5178											
CDC27	996	hgsc.bcm.edu	37	17	45249350	45249350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	45249350	T	C	45249350	3	2	81	1	0	0	0	0	1	0	0	0	3068	1792	62	3	2376	3	CDC27	17	45249350	Missense_Mutation	SNP	T	TCGA-AL-3467-01A-01D-1252-08	40604084	45249350	35945860	34	5179											
TBX4	9496	hgsc.bcm.edu;broad.mit.edu	37	17	59560359	59560359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	A	59560359	G	A	59560359	3	1	81	1	0	0	0	0	1	0	0	0	15672	1058	37	1	1150	1	TBX4	17	59560359	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	14311009	59560359	21634851	35	5180											
FBXO27	126433	broad.mit.edu	37	19	39521937	39521937	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	C	39521937	G	C	39521937	3	2	81	1	0	0	0	0	1	0	0	0	5744	1328	46	4	479	4	FBXO27	19	39521937	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08		39521937	19607046	36	5181											
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu	37	22	45929662	45929662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	A	45929662	G	A	45929662	3	1	81	1	0	0	0	0	1	0	0	0	5705	1203	42	2	694	2	FBLN1	22	45929662	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08		45929662	5374904	37	5182											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu	37	22	46785299	46785299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	G	46785299	A	G	46785299	3	3	81	1	0	0	0	0	1	0	0	0	3223	304	11	3	2673	3	CELSR1	22	46785299	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08	855637	46785299	4519267	38	5183											
ARSF	416	broad.mit.edu;bcgsc.ca	37	X	3028196	3028196	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	T	3028196	C	T	3028196	2	4	81	1	0	0	0	0	0	0	0	1	991	668	24	2		2	ARSF	23	3028196	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08		3028196	152242364	39	5184											
LUZP4	51213	broad.mit.edu	37	X	114541171	114541171	+	Silent	SNP	T	T	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	A	114541171	T	A	114541171	2	1	81	1	0	0	0	0	0	0	0	1	9095	1538	54	5		5	LUZP4	23	114541171	Silent	SNP	T	TCGA-AL-3467-01A-01D-1252-08	111512975	114541171	40729389	40	5185											
GRIK3	2899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	37307384	37307384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	37307384	C	T	37307384	3	4	82	1	0	0	0	0	1	0	0	0	6782	855	30	2	1304	2	GRIK3	1	37307384	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		37307384	211943237	1	5186											
FLG	2312	broad.mit.edu	37	1	152281871	152281871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	152281871	G	T	152281871	3	4	82	1	0	0	0	0	1	0	0	0	5929	1328	46	4	6698	4	FLG	1	152281871	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	114974487	152281871	96968750	2	5187											
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153924730	153924730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	153924730	G	A	153924730	3	1	82	1	0	0	0	0	1	0	0	0	3902	1348	47	2	1340	2	CRTC2	1	153924730	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	1642859	153924730	95325891	3	5188											
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu	37	1	156593855	156593855	+	Silent	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	156593855	C	T	156593855	2	4	82	1	0	0	0	0	0	0	0	1	6962	813	29	2		2	HAPLN2	1	156593855	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	2669125	156593855	92656766	4	5189											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216073458	216073458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	216073458	C	T	216073458	3	4	82	1	0	0	0	0	1	0	0	0	17048	565	20	2	8187	2	USH2A	1	216073458	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	59479603	216073458	33177163	5	5190											
OR2T35	403244	hgsc.bcm.edu	37	1	248801928	248801928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	248801928	A	G	248801928	3	3	82	1	0	0	0	0	1	0	0	0	11033	420	15	3	343	3	OR2T35	1	248801928	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	32728470	248801928	448693	6	5191											
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	8871568	8871568	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	-	8871568	T	-	8871568	7	5	82	1	0	1	0	1	0	0	0	0	8278	1725	60	0	721	0	KIDINS220	2	8871568	Frame_Shift_Del	DEL	T	TCGA-AL-3472-01A-01D-1252-08		8871568	234327805	7	5192											
BIRC6	57448	broad.mit.edu	37	2	32660618	32660618	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	-	32660618	A	-	32660618	7	5	82	1	0	1	0	1	0	0	0	0	1438	246	9	0	3518	0	BIRC6	2	32660618	Frame_Shift_Del	DEL	A	TCGA-AL-3472-01A-01D-1252-08	23789050	32660618	210538755	8	5193											
EMX1	2016	hgsc.bcm.edu	37	2	73145299	73145299	+	Silent	SNP	C	C	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	73145299	C	G	73145299	2	3	82	1	0	0	0	0	0	0	0	1	5109	755	27	4		4	EMX1	2	73145299	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	40484681	73145299	170054074	9	5194											
TSGA10	80705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99689479	99689479	+	Splice_Site	SNP	A	A	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	99689479	A	C	99689479	5	2	82	1	0	0	0	0	0	0	1	0	16629	405	14	5	1192	5	TSGA10	2	99689479	Splice_Site	SNP	A	TCGA-AL-3472-01A-01D-1252-08	26544180	99689479	143509894	10	5195											
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	172647961	172647961	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	172647961	C	G	172647961	3	3	82	1	0	0	0	0	1	0	0	0	14487	695	24	4	467	4	SLC25A12	2	172647961	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	72958482	172647961	70551412	11	5196											
HOXD8	3234	hgsc.bcm.edu	37	2	176995295	176995295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	176995295	G	C	176995295	3	2	82	1	0	0	0	0	1	0	0	0	7332	991	35	4	203	4	HOXD8	2	176995295	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	4347334	176995295	66204078	12	5197											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198260814	198260814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	198260814	C	T	198260814	3	4	82	1	0	0	0	0	1	0	0	0	14162	536	19	1	421	1	SF3B1	2	198260814	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	21265519	198260814	44938559	13	5198											
PER2	8864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	239176835	239176850	+	Frame_Shift_Del	DEL	GGACACTGCGGAGAAG	GGACACTGCGGAGAAG	-	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	GGACACTGCGGAGAAG	GGACACTGCGGAGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	-	239176850	GGACACTGCGGAGAAG	-	239176835	7	5	82	1	0	1	0	1	0	0	0	0	11737	1115	39	0	3002	0	PER2	2	239176835	Frame_Shift_Del	DEL	GGACACTGCGGAGAAG	TCGA-AL-3472-01A-01D-1252-08	40916021	239176835	4022538	14	5199											
TRIM71	131405	hgsc.bcm.edu	37	3	32860208	32860208	+	Silent	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	32860208	C	T	32860208	2	4	82	1	0	0	0	0	0	0	0	1	16556	747	26	2		2	TRIM71	3	32860208	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08		32860208	165162222	15	5200											
ITIH3	3699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52830615	52830615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	52830615	C	T	52830615	3	4	82	1	0	0	0	0	1	0	0	0	7912	855	30	2	243	2	ITIH3	3	52830615	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	19970407	52830615	145191815	16	5201											
ZNF654	55279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	88190087	88190087	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	88190087	A	T	88190087	4	4	82	1	0	0	0	0	0	1	0	0	18079	64	3	5	1629	5	ZNF654	3	88190087	Nonsense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	35359472	88190087	109832343	17	5202											
ASTE1	28990	hgsc.bcm.edu	37	3	130743394	130743394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	130743394	G	C	130743394	3	2	82	1	0	0	0	0	1	0	0	0	1062	1377	48	4	1298	4	ASTE1	3	130743394	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	42553307	130743394	67279036	18	5203											
SI	6476	hgsc.bcm.edu	37	3	164754251	164754251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	164754251	A	G	164754251	3	3	82	1	0	0	0	0	1	0	0	0	14310	420	15	3	3150	3	SI	3	164754251	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	34010857	164754251	33268179	19	5204											
LYAR	55646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	4276342	4276342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	4276342	C	T	4276342	3	4	82	1	0	0	0	0	1	0	0	0	9110	652	23	1	571	1	LYAR	4	4276342	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		4276342	186877934	20	5205											
NSUN7	79730	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40810405	40810405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	40810405	G	C	40810405	3	2	82	1	0	0	0	0	1	0	0	0	10690	1232	43	4	1648	4	NSUN7	4	40810405	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	36534063	40810405	150343871	21	5206											
GUF1	60558	ucsc.edu	37	4	44692823	44692823	+	Silent	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	44692823	G	A	44692823	2	1	82	1	0	0	0	0	0	0	0	1	6906	1339	47	2		2	GUF1	4	44692823	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08	3882418	44692823	146461453	22	5207											
INTU	27152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	128564929	128564929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	128564929	A	G	128564929	3	3	82	1	0	0	0	0	1	0	0	0	7793	130	5	3	406	3	INTU	4	128564929	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	83872106	128564929	62589347	23	5208											
CARD6	84674	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	40853728	40853728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	40853728	G	T	40853728	3	4	82	1	0	0	0	0	1	0	0	0	2652	1357	47	4	2304	4	CARD6	5	40853728	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		40853728	140061532	24	5209											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139193773	139193773	+	Silent	SNP	T	T	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	139193773	T	C	139193773	2	2	82	1	0	0	0	0	0	0	0	1	12657	1461	51	3		3	PSD2	5	139193773	Silent	SNP	T	TCGA-AL-3472-01A-01D-1252-08	98340045	139193773	41721487	25	5210											
SLC25A2	83884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140683030	140683030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	140683030	G	A	140683030	4	1	82	1	0	0	0	0	0	1	0	0	14495	1386	48	2	506	2	SLC25A2	5	140683030	Nonsense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	1489257	140683030	40232230	26	5211											
C6orf195	154386	broad.mit.edu	37	6	2623877	2623877	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	-	2623877	A	-	2623877	7	5	82	1	0	1	0	1	0	0	0	0	2352	291	11	0	207	0	C6orf195	6	2623877	Frame_Shift_Del	DEL	A	TCGA-AL-3472-01A-01D-1252-08		2623877	168491190	27	5212											
SLC22A23	63027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	3410472	3410472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	3410472	A	T	3410472	3	4	82	1	0	0	0	0	1	0	0	0	14465	246	9	5	1229	5	SLC22A23	6	3410472	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	786595	3410472	167704595	28	5213											
RREB1	6239	hgsc.bcm.edu	37	6	7246994	7246994	+	Silent	SNP	C	C	T	rs187908583		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	7246994	C	T	7246994	2	4	82	1	0	0	0	0	0	0	0	1	13692	755	27	1		1	RREB1	6	7246994	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	3836522	7246994	163868073	29	5214											
TRIM15	89870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30140094	30140094	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	-	30140094	A	-	30140094	7	5	82	1	0	1	0	1	0	0	0	0	16502	247	9	0	1392	0	TRIM15	6	30140094	Frame_Shift_Del	DEL	A	TCGA-AL-3472-01A-01D-1252-08	22893100	30140094	140974973	30	5215											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51712728	51712728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	51712728	A	G	51712728	3	3	82	1	0	0	0	0	1	0	0	0	11978	420	15	3	4383	3	PKHD1	6	51712728	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	21572634	51712728	119402339	31	5216											
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	135732541	135732541	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	135732541	G	C	135732541	3	2	82	1	0	0	0	0	1	0	0	0	413	1029	36	4	777	4	AHI1	6	135732541	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	84019813	135732541	35382526	32	5217											
RADIL	55698	hgsc.bcm.edu;broad.mit.edu	37	7	4876021	4876021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	4876021	G	T	4876021	3	4	82	1	0	0	0	0	1	0	0	0	13010	933	33	4	2528	4	RADIL	7	4876021	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		4876021	154262642	33	5218											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116415115	116415115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	116415115	T	A	116415115	3	1	82	1	0	0	0	0	1	0	0	0	9492	1696	59	5	3317	5	MET	7	116415115	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08	111539094	116415115	42723548	34	5219											
CALD1	800	hgsc.bcm.edu	37	7	134618593	134618593	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	134618593	G	C	134618593	3	2	82	1	0	0	0	0	1	0	0	0	2583	1000	35	4	1140	4	CALD1	7	134618593	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	18203478	134618593	24520070	35	5220											
DMRT2	10655	hgsc.bcm.edu	37	9	1051930	1051930	+	Missense_Mutation	SNP	C	C	G	rs112585712		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	1051930	C	G	1051930	3	3	82	1	0	0	0	0	1	0	0	0	4588	565	20	4	319	4	DMRT2	9	1051930	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		1051930	140161501	36	5221											
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	21334413	21334413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	21334413	A	T	21334413	3	4	82	1	0	0	0	0	1	0	0	0	8403	275	10	5	1411	5	KLHL9	9	21334413	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	20282483	21334413	119879018	37	5222											
PSAT1	29968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	80942983	80942984	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	80942984	-	A	80942983	7	5	82	1	0	1	1	0	0	0	0	0	12654	595	21	0	916	0	PSAT1	9	80942983	Frame_Shift_Ins	INS	-	TCGA-AL-3472-01A-01D-1252-08	59608570	80942983	60270448	38	5223											
RPL12	6136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130213582	130213582	+	Silent	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	130213582	G	A	130213582	2	1	82	1	0	0	0	0	0	0	0	1	13571	1049	37	1		1	RPL12	9	130213582	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08	49270599	130213582	10999849	39	5224											
AKR1E2	83592	hgsc.bcm.edu	37	10	4877871	4877871	+	Missense_Mutation	SNP	C	C	A	rs149822509	byfrequency;alternate_allele	TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	4877871	C	A	4877871	3	1	82	1	0	0	0	0	1	0	0	0	474	681	24	4	343	4	AKR1E2	10	4877871	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		4877871	130656876	40	5225											
MINPP1	9562	hgsc.bcm.edu	37	10	89265100	89265100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	89265100	A	G	89265100	3	3	82	1	0	0	0	0	1	0	0	0	9595	275	10	3	430	3	MINPP1	10	89265100	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	84387229	89265100	46269647	41	5226											
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	19955397	19955397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	19955397	C	T	19955397	3	4	82	1	0	0	0	0	1	0	0	0	10191	855	30	2	1712	2	NAV2	11	19955397	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		19955397	115051119	42	5227											
FNBP4	23360	hgsc.bcm.edu	37	11	47788808	47788808	+	Silent	SNP	A	A	G	rs146921625		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	47788808	A	G	47788808	2	3	82	1	0	0	0	0	0	0	0	1	5974	378	14	3		3	FNBP4	11	47788808	Silent	SNP	A	TCGA-AL-3472-01A-01D-1252-08	27833411	47788808	87217708	43	5228											
DLG2	1740	hgsc.bcm.edu	37	11	83770383	83770383	+	Silent	SNP	T	T	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	83770383	T	C	83770383	2	2	82	1	0	0	0	0	0	0	0	1	4557	1838	64	3		3	DLG2	11	83770383	Silent	SNP	T	TCGA-AL-3472-01A-01D-1252-08	35981575	83770383	51236133	44	5229											
OR10G8	219869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123900948	123900948	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	123900948	T	G	123900948	3	3	82	1	0	0	0	0	1	0	0	0	10910	1551	54	5	621	5	OR10G8	11	123900948	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08	40130565	123900948	11105568	45	5230											
ST14	6768	hgsc.bcm.edu;broad.mit.edu	37	11	130066334	130066334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	130066334	A	G	130066334	3	3	82	1	0	0	0	0	1	0	0	0	15223	43	2	3	1252	3	ST14	11	130066334	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	6165386	130066334	4940182	46	5231											
IQSEC3	440073	hgsc.bcm.edu	37	12	176334	176334	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	176334	G	C	176334	3	2	82	1	0	0	0	0	1	0	0	0	7826	1174	41	4	288	4	IQSEC3	12	176334	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		176334	133675561	47	5232											
FGF6	2251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4554499	4554500	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	AG	4554500	CC	AG	4554499	3	1	82	1	0	0	0	0	1	0	0	0	5863	507	18	4	400	4	FGF6	12	4554499	Missense_Mutation	DNP	CC	TCGA-AL-3472-01A-01D-1252-08	4378165	4554499	129297396	48	5233											
LAG3	3902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6886462	6886462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	6886462	C	A	6886462	3	1	82	1	0	0	0	0	1	0	0	0	8607	680	24	4	1112	4	LAG3	12	6886462	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	2331963	6886462	126965433	49	5234											
LRP6	4040	hgsc.bcm.edu	37	12	12274105	12274105	+	Silent	SNP	A	A	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	12274105	A	G	12274105	2	3	82	1	0	0	0	0	0	0	0	1	8969	330	12	3		3	LRP6	12	12274105	Silent	SNP	A	TCGA-AL-3472-01A-01D-1252-08	5387643	12274105	121577790	50	5235											
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	29670368	29670368	+	Silent	SNP	A	A	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	29670368	A	G	29670368	2	3	82	1	0	0	0	0	0	0	0	1	16272	69	3	3		3	TMTC1	12	29670368	Silent	SNP	A	TCGA-AL-3472-01A-01D-1252-08	17396263	29670368	104181527	51	5236											
ALDH2	217	broad.mit.edu	37	12	112229114	112229114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	112229114	G	A	112229114	3	1	82	1	0	0	0	0	1	0	0	0	496	1203	42	2	712	2	ALDH2	12	112229114	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	82558746	112229114	21622781	52	5237											
RBM19	9904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	114397941	114397941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	114397941	C	T	114397941	3	4	82	1	0	0	0	0	1	0	0	0	13134	797	28	2	2708	2	RBM19	12	114397941	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	2168827	114397941	19453954	53	5238											
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	132393457	132393457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	132393457	G	A	132393457	3	1	82	1	0	0	0	0	1	0	0	0	16987	1087	38	1	531	1	ULK1	12	132393457	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	17995516	132393457	1458438	54	5239											
ACYP1	97	hgsc.bcm.edu	37	14	75528414	75528414	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	75528414	G	C	75528414	3	2	82	1	0	0	0	0	1	0	0	0	228	1174	41	4	250	4	ACYP1	14	75528414	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		75528414	31821126	55	5240											
CDC42BPB	9578	broad.mit.edu	37	14	103430982	103430982	+	Silent	SNP	C	C	T	rs142014338		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	103430982	C	T	103430982	2	4	82	1	0	0	0	0	0	0	0	1	3075	755	27	1		1	CDC42BPB	14	103430982	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	27902568	103430982	3918558	56	5241											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101592098	101592098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	101592098	C	A	101592098	3	1	82	1	0	0	0	0	1	0	0	0	9039	478	17	4	3712	4	LRRK1	15	101592098	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		101592098	939294	57	5242											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2814808	2814809	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	2814809	-	T	2814808	7	5	82	1	0	1	1	0	0	0	0	0	15181	101	4	0	4317	0	SRRM2	16	2814808	Frame_Shift_Ins	INS	-	TCGA-AL-3472-01A-01D-1252-08		2814808	87539945	58	5243											
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	11066855	11066855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	11066855	A	C	11066855	3	2	82	1	0	0	0	0	1	0	0	0	3502	101	4	5	687	5	CLEC16A	16	11066855	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	8252047	11066855	79287898	59	5244											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	49670867	49670867	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	49670867	C	G	49670867	3	3	82	1	0	0	0	0	1	0	0	0	17910	680	24	4	1678	4	ZNF423	16	49670867	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	38604012	49670867	40683886	60	5245											
KIAA0513	9764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	85100829	85100829	+	Missense_Mutation	SNP	C	C	T	rs148950418		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	85100829	C	T	85100829	3	4	82	1	0	0	0	0	1	0	0	0	8188	768	27	1	154	1	KIAA0513	16	85100829	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	35429962	85100829	5253924	61	5246											
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10258306	10258306	+	Silent	SNP	C	C	G	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	10258306	C	G	10258306	2	3	82	1	0	0	0	0	0	0	0	1	10039	465	17	4		4	MYH13	17	10258306	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08		10258306	70936904	62	5247											
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17080727	17080727	+	Splice_Site	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	17080727	G	A	17080727	5	1	82	1	0	0	0	0	0	0	1	0	9750	1275	44	2	3042	2	MPRIP	17	17080727	Splice_Site	SNP	G	TCGA-AL-3472-01A-01D-1252-08	6822421	17080727	64114483	63	5248											
NDUFS7	374291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1391140	1391140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	1391140	C	T	1391140	3	4	82	1	0	0	0	0	1	0	0	0	10304	652	23	1	453	1	NDUFS7	19	1391140	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		1391140	57737843	64	5249											
FAM108A1	81926	hgsc.bcm.edu	37	19	1881550	1881550	+	Silent	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	1881550	G	A	1881550	2	1	82	1	0	0	0	0	0	0	0	1	5395	962	34	2		2	FAM108A1	19	1881550	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08	490410	1881550	57247433	65	5250											
EEF2	1938	hgsc.bcm.edu;broad.mit.edu	37	19	3983291	3983293	+	Splice_Site	DEL	TGA	TGA	-	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	-	3983293	TGA	-	3983291	8	5	82	1	0	1	0	1	0	0	1	0	4931	1594	55	0	2411	0	EEF2	19	3983291	Splice_Site	DEL	TGA	TCGA-AL-3472-01A-01D-1252-08	2101741	3983291	55145692	66	5251											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9063328	9063328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	9063328	T	C	9063328	3	2	82	1	0	0	0	0	1	0	0	0	9980	1696	59	3	19733	3	MUC16	19	9063328	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08	5080037	9063328	50065655	67	5252											
GGN	199720	hgsc.bcm.edu;broad.mit.edu	37	19	38876904	38876904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	38876904	G	T	38876904	3	4	82	1	0	0	0	0	1	0	0	0	6365	1203	42	4	968	4	GGN	19	38876904	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	29813576	38876904	20252079	68	5253											
SPTBN4	57731	hgsc.bcm.edu	37	19	41018832	41018832	+	Silent	SNP	A	A	G	rs814533		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	G	41018832	A	G	41018832	2	3	82	1	0	0	0	0	0	0	0	1	15133	291	11	3		3	SPTBN4	19	41018832	Silent	SNP	A	TCGA-AL-3472-01A-01D-1252-08	2141928	41018832	18110151	69	5254											
BCAM	4059	ucsc.edu	37	19	45322837	45322837	+	Splice_Site	SNP	A	A	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	45322837	A	C	45322837	5	2	82	1	0	0	0	0	0	0	1	0	1344	202	7	5	1667	5	BCAM	19	45322837	Splice_Site	SNP	A	TCGA-AL-3472-01A-01D-1252-08	4304005	45322837	13806146	70	5255											
CGB1	114335	hgsc.bcm.edu	37	19	49538974	49538974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	49538974	G	A	49538974	3	1	82	1	0	0	0	0	1	0	0	0	3299	1174	41	2	110	2	CGB1	19	49538974	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	4216137	49538974	9590009	71	5256											
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	50102854	50102854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	50102854	C	T	50102854	3	4	82	1	0	0	0	0	1	0	0	0	12594	623	22	2	4022	2	PRR12	19	50102854	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	563880	50102854	9026129	72	5257											
IL4I1	259307	hgsc.bcm.edu	37	19	50393285	50393285	+	Missense_Mutation	SNP	T	T	C	rs200284411		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	50393285	T	C	50393285	3	2	82	1	0	0	0	0	1	0	0	0	7704	1696	59	3	361	3	IL4I1	19	50393285	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08	290431	50393285	8735698	73	5258											
NUP62	23636	broad.mit.edu	37	19	50412018	50412018	+	Silent	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	50412018	C	T	50412018	2	4	82	1	0	0	0	0	0	0	0	1	10775	726	26	2		2	NUP62	19	50412018	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	18733	50412018	8716965	74	5259											
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56459468	56459468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	56459468	G	A	56459468	3	1	82	1	0	0	0	0	1	0	0	0	10490	1203	42	2	202	2	NLRP8	19	56459468	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	6047450	56459468	2669515	75	5260											
ZNF583	147949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56934490	56934490	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	56934490	A	T	56934490	3	4	82	1	0	0	0	0	1	0	0	0	18027	14	1	5	477	5	ZNF583	19	56934490	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	475022	56934490	2194493	76	5261											
CSNK2A1	1457	hgsc.bcm.edu	37	20	470423	470423	+	Splice_Site	SNP	C	C	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	470423	C	A	470423	5	1	82	1	0	0	0	0	0	0	1	0	3959	521	18	4	471	4	CSNK2A1	20	470423	Splice_Site	SNP	C	TCGA-AL-3472-01A-01D-1252-08		470423	62555097	77	5262											
PLTP	5360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44534919	44534919	+	Silent	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	44534919	G	A	44534919	2	1	82	1	0	0	0	0	0	0	0	1	12121	1368	48	2		2	PLTP	20	44534919	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08	44064496	44534919	18490601	78	5263											
SLC12A5	57468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44670175	44670175	+	Silent	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	44670175	C	T	44670175	2	4	82	1	0	0	0	0	0	0	0	1	14399	816	29	2		2	SLC12A5	20	44670175	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	135256	44670175	18355345	79	5264											
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56140816	56140817	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	-	56140817	GA	-	56140816	7	5	82	1	0	1	0	1	0	0	0	0	11588	1059	37	0	1859	0	PCK1	20	56140816	Frame_Shift_Del	DEL	GA	TCGA-AL-3472-01A-01D-1252-08	11470641	56140816	6884704	80	5265											
KRTAP13-3	337960	hgsc.bcm.edu	37	21	31797825	31797825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	31797825	T	C	31797825	3	2	82	1	0	0	0	0	1	0	0	0	8531	1638	57	3	116	3	KRTAP13-3	21	31797825	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08		31797825	16332070	81	5266											
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	45743723	45743723	+	Silent	SNP	C	C	T	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	T	45743723	C	T	45743723	2	4	82	1	0	0	0	0	0	0	0	1	11771	845	30	2		2	PFKL	21	45743723	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	13945898	45743723	2386172	82	5267											
INPP5J	27124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31523948	31523948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	C	31523948	G	C	31523948	3	2	82	1	0	0	0	0	1	0	0	0	7766	1357	47	4	721	4	INPP5J	22	31523948	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		31523948	19780618	83	5268											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42191444	42191444	+	Silent	SNP	C	C	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	42191444	C	A	42191444	2	1	82	1	0	0	0	0	0	0	0	1	9472	900	32	4		4	MEI1	22	42191444	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	10667496	42191444	9113122	84	5269											
PJA1	64219	broad.mit.edu	37	X	68382203	68382203	+	Silent	SNP	G	G	A	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	A	68382203	G	A	68382203	2	1	82	1	0	0	0	0	0	0	0	1	11968	1103	39	1		1	PJA1	23	68382203	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08		68382203	86888357	85	5270											
CCDC27	148870	hgsc.bcm.edu	37	1	3679839	3679839	+	Silent	SNP	A	A	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	3679839	A	G	3679839	2	3	83	1	0	0	0	0	0	0	0	1	2803	69	3	3		3	CCDC27	1	3679839	Silent	SNP	A	TCGA-AL-3473-01A-01D-1252-08		3679839	245570782	1	5271											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10342493	10342493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	10342493	T	A	10342493	3	1	83	1	0	0	0	0	1	0	0	0	8291	1580	55	5	1244	5	KIF1B	1	10342493	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	6662654	10342493	238908128	2	5272											
SCMH1	22955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41503104	41503104	+	Silent	SNP	G	G	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	41503104	G	A	41503104	2	1	83	1	0	0	0	0	0	0	0	1	13921	1252	44	2		2	SCMH1	1	41503104	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	31160611	41503104	207747517	3	5273											
INADL	10207	hgsc.bcm.edu	37	1	62516665	62516665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	62516665	A	G	62516665	3	3	83	1	0	0	0	0	1	0	0	0	7738	420	15	3	4178	3	INADL	1	62516665	Missense_Mutation	SNP	A	TCGA-AL-3473-01A-01D-1252-08	21013561	62516665	186733956	4	5274											
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78959187	78959187	+	Silent	SNP	G	G	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	78959187	G	A	78959187	2	1	83	1	0	0	0	0	0	0	0	1	12760	1045	37	1		1	PTGFR	1	78959187	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	16442522	78959187	170291434	5	5275											
AGL	178	broad.mit.edu	37	1	100346330	100346330	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	100346330	T	A	100346330	3	1	83	1	0	0	0	0	1	0	0	0	384	1461	51	5	1997	5	AGL	1	100346330	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	21387143	100346330	148904291	6	5276											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113657326	113657326	+	Silent	SNP	C	C	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	113657326	C	A	113657326	2	1	83	1	0	0	0	0	0	0	0	1	8952	610	22	4		4	LRIG2	1	113657326	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	13310996	113657326	135593295	7	5277											
PEX19	5824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160253370	160253370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	160253370	C	T	160253370	3	4	83	1	0	0	0	0	1	0	0	0	11751	739	26	2	797	2	PEX19	1	160253370	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	46596044	160253370	88997251	8	5278											
FCGR2A	2212	broad.mit.edu	37	1	161475799	161475804	+	Splice_Site	DEL	TGAGTA	TGAGTA	-	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	TGAGTA	TGAGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	-	161475804	TGAGTA	-	161475799	8	5	83	1	0	1	0	1	0	0	1	0	5788	1710	59	0	114	0	FCGR2A	1	161475799	Splice_Site	DEL	TGAGTA	TCGA-AL-3473-01A-01D-1252-08	1222429	161475799	87774822	9	5279											
TMEM183B	653659	hgsc.bcm.edu	37	1	202976622	202976622	+	Missense_Mutation	SNP	G	G	T	rs199910238		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	202976622	G	T	202976622	3	4	83	1	0	0	0	0	1	0	0	0	16115	1000	35	4	31	4	TMEM183B	1	202976622	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	41500823	202976622	46273999	10	5280											
ESRRG	2104	hgsc.bcm.edu	37	1	216680501	216680501	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	216680501	T	G	216680501	3	3	83	1	0	0	0	0	1	0	0	0	5264	1783	62	5	223	5	ESRRG	1	216680501	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	13703879	216680501	32570120	11	5281											
RYR2	6262	broad.mit.edu	37	1	237713899	237713899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	237713899	G	A	237713899	3	1	83	1	0	0	0	0	1	0	0	0	13782	1058	37	1	3228	1	RYR2	1	237713899	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	21033398	237713899	11536722	12	5282											
WDR35	57539	broad.mit.edu	37	2	20175308	20175308	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	20175308	T	A	20175308	3	1	83	1	0	0	0	0	1	0	0	0	17301	1754	61	5	3084	5	WDR35	2	20175308	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		20175308	223024065	13	5283											
PUM2	23369	hgsc.bcm.edu	37	2	20511256	20511256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	20511256	T	C	20511256	3	2	83	1	0	0	0	0	1	0	0	0	12839	1768	61	3	2745	3	PUM2	2	20511256	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	335948	20511256	222688117	14	5284											
GDF7	151449	hgsc.bcm.edu	37	2	20870531	20870531	+	Silent	SNP	G	G	A	rs192407174		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	20870531	G	A	20870531	2	1	83	1	0	0	0	0	0	0	0	1	6325	1310	46	2		2	GDF7	2	20870531	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	359275	20870531	222328842	15	5285											
PEX13	5194	broad.mit.edu	37	2	61275734	61275735	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	61275735	-	G	61275734	7	5	83	1	0	1	1	0	0	0	0	0	11748	69	3	0	1055	0	PEX13	2	61275734	Frame_Shift_Ins	INS	-	TCGA-AL-3473-01A-01D-1252-08	40405203	61275734	181923639	16	5286											
ANKRD36B	57730	hgsc.bcm.edu	37	2	98128421	98128421	+	Missense_Mutation	SNP	T	T	C	rs78091509	bycluster	TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	98128421	T	C	98128421	3	2	83	1	0	0	0	0	1	0	0	0	666	1841	64	3	1181	3	ANKRD36B	2	98128421	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	36852687	98128421	145070952	17	5287											
SCN3A	6328	hgsc.bcm.edu	37	2	165947167	165947167	+	Silent	SNP	G	G	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	165947167	G	C	165947167	2	2	83	1	0	0	0	0	0	0	0	1	13931	1161	41	4		4	SCN3A	2	165947167	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	67818746	165947167	77252206	18	5288											
LRP2	4036	broad.mit.edu;ucsc.edu	37	2	170029726	170029726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	170029726	C	T	170029726	3	4	83	1	0	0	0	0	1	0	0	0	8963	710	25	2	3036	2	LRP2	2	170029726	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	4082559	170029726	73169647	19	5289											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228882137	228882137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	228882137	C	T	228882137	3	4	83	1	0	0	0	0	1	0	0	0	15060	835	29	2	1693	2	SPHKAP	2	228882137	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	58852411	228882137	14317236	20	5290											
VHL	7428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	10188203	10188204	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	10188204	-	T	10188203	7	5	83	1	0	1	1	0	0	0	0	0	17174	681	24	0	352	0	VHL	3	10188203	Frame_Shift_Ins	INS	-	TCGA-AL-3473-01A-01D-1252-08		10188203	187834227	21	5291											
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	25832524	25832524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	25832524	C	A	25832524	3	1	83	1	0	0	0	0	1	0	0	0	11342	680	24	4	15	4	OXSM	3	25832524	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	15644321	25832524	172189906	22	5292											
LAMB2	3913	broad.mit.edu	37	3	49167097	49167098	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	-	49167098	GG	-	49167097	7	5	83	1	0	1	0	1	0	0	0	0	8618	1335	47	0	4026	0	LAMB2	3	49167097	Frame_Shift_Del	DEL	GG	TCGA-AL-3473-01A-01D-1252-08	23334573	49167097	148855333	23	5293											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52437889	52437889	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	-	52437889	C	-	52437889	7	5	83	1	0	1	0	1	0	0	0	0	1311	842	30	0	937	0	BAP1	3	52437889	Frame_Shift_Del	DEL	C	TCGA-AL-3473-01A-01D-1252-08	3270792	52437889	145584541	24	5294											
SPATA12	353324	hgsc.bcm.edu	37	3	57108279	57108279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	57108279	T	C	57108279	3	2	83	1	0	0	0	0	1	0	0	0	15011	1406	49	3	559	3	SPATA12	3	57108279	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	4670390	57108279	140914151	25	5295											
PROS1	5627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	93624723	93624723	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	93624723	C	G	93624723	3	3	83	1	0	0	0	0	1	0	0	0	12568	855	30	4	1564	4	PROS1	3	93624723	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	36516444	93624723	104397707	26	5296											
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121341915	121341915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	121341915	C	T	121341915	3	4	83	1	0	0	0	0	1	0	0	0	5756	739	26	2	1645	2	FBXO40	3	121341915	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	27717192	121341915	76680515	27	5297											
INTU	27152	hgsc.bcm.edu	37	4	128608920	128608920	+	Silent	SNP	T	T	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	128608920	T	C	128608920	2	2	83	1	0	0	0	0	0	0	0	1	7793	1490	52	3		3	INTU	4	128608920	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08		128608920	62545356	28	5298											
ITGA1	3672	hgsc.bcm.edu	37	5	52223476	52223476	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	52223476	C	G	52223476	3	3	83	1	0	0	0	0	1	0	0	0	7879	854	30	4	2754	4	ITGA1	5	52223476	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08		52223476	128691784	29	5299											
GPBP1	65056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	56542173	56542173	+	Silent	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	56542173	T	A	56542173	2	1	83	1	0	0	0	0	0	0	0	1	6602	1742	61	5		5	GPBP1	5	56542173	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08	4318697	56542173	124373087	30	5300											
MAST4	375449	hgsc.bcm.edu	37	5	66432458	66432458	+	Silent	SNP	C	C	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	66432458	C	G	66432458	2	3	83	1	0	0	0	0	0	0	0	1	9334	842	30	4		4	MAST4	5	66432458	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	9890285	66432458	114482802	31	5301											
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140188710	140188710	+	Silent	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	140188710	C	T	140188710	2	4	83	1	0	0	0	0	0	0	0	1	11533	726	26	2		2	PCDHA4	5	140188710	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	73756252	140188710	40726550	32	5302											
LAMA2	3908	broad.mit.edu	37	6	129670492	129670492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	129670492	G	A	129670492	3	1	83	1	0	0	0	0	1	0	0	0	8613	1203	42	2	4608	2	LAMA2	6	129670492	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08		129670492	41444575	33	5303											
STXBP5	134957	broad.mit.edu	37	6	147637421	147637421	+	Silent	SNP	G	G	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	147637421	G	A	147637421	2	1	83	1	0	0	0	0	0	0	0	1	15368	962	34	2		2	STXBP5	6	147637421	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	17966929	147637421	23477646	34	5304											
NOD1	10392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	30472766	30472766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	30472766	A	G	30472766	3	3	83	1	0	0	0	0	1	0	0	0	10523	159	6	3	222	3	NOD1	7	30472766	Missense_Mutation	SNP	A	TCGA-AL-3473-01A-01D-1252-08		30472766	128665897	35	5305											
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	35674964	35674964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	35674964	G	T	35674964	3	4	83	1	0	0	0	0	1	0	0	0	7071	1348	47	4	510	4	HERPUD2	7	35674964	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	5202198	35674964	123463699	36	5306											
NAPEPLD	222236	broad.mit.edu	37	7	102769017	102769017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	102769017	C	T	102769017	4	4	83	1	0	0	0	0	0	1	0	0	10170	740	26	2	990	2	NAPEPLD	7	102769017	Nonsense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	67094053	102769017	56369646	37	5307											
SSPO	23145	hgsc.bcm.edu	37	7	149487608	149487608	+	Splice_Site	SNP	T	T	G	rs1635798		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	149487608	T	G	149487608	5	3	83	1	0	0	0	0	0	0	1	0	15201	1739	60	5	5044	5	SSPO	7	149487608	Splice_Site	SNP	T	TCGA-AL-3473-01A-01D-1252-08	46718591	149487608	9651055	38	5308											
KIAA1967	57805	broad.mit.edu;bcgsc.ca	37	8	22474942	22474942	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	-	22474942	G	-	22474942	7	5	83	1	0	1	0	1	0	0	0	0	8272	1348	47	0	1909	0	KIAA1967	8	22474942	Frame_Shift_Del	DEL	G	TCGA-AL-3473-01A-01D-1252-08		22474942	123889080	39	5309											
GAS1	2619	hgsc.bcm.edu	37	9	89560846	89560846	+	Silent	SNP	C	C	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	89560846	C	G	89560846	2	3	83	1	0	0	0	0	0	0	0	1	6251	755	27	4		4	GAS1	9	89560846	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08		89560846	51652585	40	5310											
OR1L4	254973	hgsc.bcm.edu	37	9	125486286	125486286	+	Silent	SNP	T	T	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	125486286	T	C	125486286	2	2	83	1	0	0	0	0	0	0	0	1	10972	1413	49	3		3	OR1L4	9	125486286	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08	35925440	125486286	15727145	41	5311											
PITRM1	10531	broad.mit.edu;bcgsc.ca	37	10	3199645	3199645	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	-	3199645	A	-	3199645	7	5	83	1	0	1	0	1	0	0	0	0	11960	127	5	0	1848	0	PITRM1	10	3199645	Frame_Shift_Del	DEL	A	TCGA-AL-3473-01A-01D-1252-08		3199645	132335102	42	5312											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	32560793	32560793	+	Silent	SNP	A	A	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	32560793	A	G	32560793	2	3	83	1	0	0	0	0	0	0	0	1	5162	446	16	3		3	EPC1	10	32560793	Silent	SNP	A	TCGA-AL-3473-01A-01D-1252-08	29361148	32560793	102973954	43	5313											
CUEDC2	79004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104184514	104184514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	104184514	C	T	104184514	3	4	83	1	0	0	0	0	1	0	0	0	4055	623	22	2	781	2	CUEDC2	10	104184514	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	71623721	104184514	31350233	44	5314											
SORCS3	22986	hgsc.bcm.edu	37	10	107022222	107022222	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	107022222	G	C	107022222	3	2	83	1	0	0	0	0	1	0	0	0	14945	1174	41	4	3679	4	SORCS3	10	107022222	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	2837708	107022222	28512525	45	5315											
HTRA1	5654	broad.mit.edu	37	10	124273765	124273765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	124273765	G	A	124273765	3	1	83	1	0	0	0	0	1	0	0	0	7460	1087	38	1	1367	1	HTRA1	10	124273765	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	17251543	124273765	11260982	46	5316											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1104253	1104253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	1104253	G	A	1104253	3	1	83	1	0	0	0	0	1	0	0	0	9982	1232	43	2	8630	2	MUC2	11	1104253	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08		1104253	133902263	47	5317											
MRGPRX3	117195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18159638	18159638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	18159638	G	A	18159638	3	1	83	1	0	0	0	0	1	0	0	0	9775	1174	41	2	891	2	MRGPRX3	11	18159638	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	17055385	18159638	116846878	48	5318											
SNX15	29907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64802325	64802325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	64802325	T	G	64802325	3	3	83	1	0	0	0	0	1	0	0	0	14899	1841	64	5	277	5	SNX15	11	64802325	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	46642687	64802325	70204191	49	5319											
GDPD5	81544	broad.mit.edu	37	11	75146590	75146591	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	75146591	-	G	75146590	7	5	83	1	0	1	1	0	0	0	0	0	6334	1580	55	0	41	0	GDPD5	11	75146590	Frame_Shift_Ins	INS	-	TCGA-AL-3473-01A-01D-1252-08	10344265	75146590	59859926	50	5320											
BIRC3	330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102206814	102206814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	102206814	T	G	102206814	3	3	83	1	0	0	0	0	1	0	0	0	1436	1725	60	5	1464	5	BIRC3	11	102206814	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	27060224	102206814	32799702	51	5321											
CASP1	834	broad.mit.edu;ucsc.edu	37	11	104903803	104903803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	104903803	A	T	104903803	3	4	83	1	0	0	0	0	1	0	0	0	2670	246	9	5	917	5	CASP1	11	104903803	Missense_Mutation	SNP	A	TCGA-AL-3473-01A-01D-1252-08	2696989	104903803	30102713	52	5322											
OR8G5	219865	hgsc.bcm.edu	37	11	124135727	124135727	+	Silent	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	124135727	C	T	124135727	2	4	83	1	0	0	0	0	0	0	0	1	11243	610	22	2		2	OR8G5	11	124135727	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	19231924	124135727	10870789	53	5323											
PKNOX2	63876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	125280693	125280693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	125280693	C	T	125280693	3	4	83	1	0	0	0	0	1	0	0	0	11990	652	23	1	759	1	PKNOX2	11	125280693	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	1144966	125280693	9725823	54	5324											
SNX19	399979	ucsc.edu	37	11	130785010	130785010	+	Silent	SNP	T	T	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	130785010	T	G	130785010	2	3	83	1	0	0	0	0	0	0	0	1	14903	1683	59	5		5	SNX19	11	130785010	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08	5504317	130785010	4221506	55	5325											
WNK1	65125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	978188	978188	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	978188	T	A	978188	3	1	83	1	0	0	0	0	1	0	0	0	17389	1783	62	5	3589	5	WNK1	12	978188	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		978188	132873707	56	5326											
CD27	939	hgsc.bcm.edu;broad.mit.edu	37	12	6554287	6554287	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	6554287	T	A	6554287	3	1	83	1	0	0	0	0	1	0	0	0	2992	1580	55	5	28	5	CD27	12	6554287	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	5576099	6554287	127297608	57	5327											
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	24102509	24102509	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	24102509	C	G	24102509	3	3	83	1	0	0	0	0	1	0	0	0	14967	680	24	4	2334	4	SOX5	12	24102509	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	17548222	24102509	109749386	58	5328											
DDX11	1663	hgsc.bcm.edu	37	12	31242981	31242981	+	Silent	SNP	C	C	A	rs3892690		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	31242981	C	A	31242981	2	1	83	1	0	0	0	0	0	0	0	1	4345	643	23	4		4	DDX11	12	31242981	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	7140472	31242981	102608914	59	5329											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu	37	12	64377805	64377805	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	64377805	T	A	64377805	3	1	83	1	0	0	0	0	1	0	0	0	15157	1580	55	5	152	5	SRGAP1	12	64377805	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	33134824	64377805	69474090	60	5330											
SLC35E3	55508	hgsc.bcm.edu	37	12	69140471	69140471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	69140471	T	C	69140471	3	2	83	1	0	0	0	0	1	0	0	0	14599	1580	55	3	316	3	SLC35E3	12	69140471	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	4762666	69140471	64711424	61	5331											
MYBPC1	4604	broad.mit.edu	37	12	102046970	102046970	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	102046970	G	T	102046970	4	4	83	1	0	0	0	0	0	1	0	0	10018	1291	45	4	1781	4	MYBPC1	12	102046970	Nonsense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	32906499	102046970	31804925	62	5332											
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	52485956	52485956	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	52485956	A	C	52485956	3	2	83	1	0	0	0	0	1	0	0	0	10422	391	14	5	1312	5	NID2	14	52485956	Missense_Mutation	SNP	A	TCGA-AL-3473-01A-01D-1252-08		52485956	54863584	63	5333											
RAB27A	5873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	55516128	55516128	+	Silent	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	55516128	T	A	55516128	2	1	83	1	0	0	0	0	0	0	0	1	12927	1509	53	5		5	RAB27A	15	55516128	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08		55516128	47015264	64	5334											
PIGQ	9091	broad.mit.edu	37	16	624651	624651	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	624651	T	G	624651	3	3	83	1	0	0	0	0	1	0	0	0	11903	1667	58	5	579	5	PIGQ	16	624651	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		624651	89730102	65	5335											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	2059674	T	C	2059674	3	2	83	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	1435023	2059674	88295079	66	5336											
RNPS1	10921	broad.mit.edu	37	16	2313224	2313224	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	2313224	T	G	2313224	3	3	83	1	0	0	0	0	1	0	0	0	13524	1580	55	5	645	5	RNPS1	16	2313224	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	253550	2313224	88041529	67	5337											
TMC7	79905	hgsc.bcm.edu;broad.mit.edu	37	16	19073098	19073098	+	Splice_Site	SNP	A	A	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	19073098	A	T	19073098	5	4	83	1	0	0	0	0	0	0	1	0	16002	434	15	5	2167	5	TMC7	16	19073098	Splice_Site	SNP	A	TCGA-AL-3473-01A-01D-1252-08	16759874	19073098	71281655	68	5338											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21080893	21080893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	21080893	C	T	21080893	3	4	83	1	0	0	0	0	1	0	0	0	4605	768	27	1	9285	1	DNAH3	16	21080893	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	2007795	21080893	69273860	69	5339											
TMEM107	84314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8079579	8079579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	8079579	G	T	8079579	3	4	83	1	0	0	0	0	1	0	0	0	16035	1232	43	4	434	4	TMEM107	17	8079579	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08		8079579	73115631	70	5340											
PSMC3IP	29893	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40726133	40726133	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	40726133	G	T	40726133	4	4	83	1	0	0	0	0	0	1	0	0	12698	1195	42	4	352	4	PSMC3IP	17	40726133	Nonsense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	32646554	40726133	40469077	71	5341											
TMEM106A	113277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41365849	41365849	+	Silent	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	41365849	C	T	41365849	2	4	83	1	0	0	0	0	0	0	0	1	16032	796	28	2		2	TMEM106A	17	41365849	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	639716	41365849	39829361	72	5342											
CDC27	996	hgsc.bcm.edu	37	17	45247409	45247409	+	Splice_Site	SNP	C	C	T	rs78111769		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	45247409	C	T	45247409	5	4	83	1	0	0	0	0	0	0	1	0	3068	695	24	2	2305	2	CDC27	17	45247409	Splice_Site	SNP	C	TCGA-AL-3473-01A-01D-1252-08	3881560	45247409	35947801	73	5343											
PHB	5245	broad.mit.edu	37	17	47486482	47486483	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	-	47486483	CT	-	47486482	7	5	83	1	0	1	0	1	0	0	0	0	11821	796	28	0	398	0	PHB	17	47486482	Frame_Shift_Del	DEL	CT	TCGA-AL-3473-01A-01D-1252-08	2239073	47486482	33708728	74	5344											
ME2	4200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	48442562	48442562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	48442562	C	G	48442562	3	3	83	1	0	0	0	0	1	0	0	0	9425	477	17	4	431	4	ME2	18	48442562	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08		48442562	29634686	75	5345											
MUC16	94025	broad.mit.edu	37	19	9067237	9067237	+	Missense_Mutation	SNP	T	T	G	rs201826382		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	9067237	T	G	9067237	3	3	83	1	0	0	0	0	1	0	0	0	9980	1696	59	5	23642	5	MUC16	19	9067237	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		9067237	50061746	76	5346											
SLC25A42	284439	broad.mit.edu	37	19	19221630	19221630	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	-	19221630	T	-	19221630	7	5	83	1	0	1	0	1	0	0	0	0	14520	1435	50	0	928	0	SLC25A42	19	19221630	Frame_Shift_Del	DEL	T	TCGA-AL-3473-01A-01D-1252-08	10154393	19221630	39907353	77	5347											
APLP1	333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36362560	36362560	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	36362560	T	A	36362560	4	1	83	1	0	0	0	0	0	1	0	0	778	1764	61	5	602	5	APLP1	19	36362560	Nonsense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	17140930	36362560	22766423	78	5348											
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36582178	36582178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	36582178	C	T	36582178	3	4	83	1	0	0	0	0	1	0	0	0	17325	893	31	1	2177	1	WDR62	19	36582178	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	219618	36582178	22546805	79	5349											
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu	37	19	37678072	37678072	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	37678072	T	A	37678072	3	1	83	1	0	0	0	0	1	0	0	0	18030	1493	52	5	1946	5	ZNF585B	19	37678072	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	1095894	37678072	21450911	80	5350											
ZNF320	162967	broad.mit.edu	37	19	53385207	53385207	+	Silent	SNP	A	A	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	53385207	A	G	53385207	2	3	83	1	0	0	0	0	0	0	0	1	17851	98	4	3		3	ZNF320	19	53385207	Silent	SNP	A	TCGA-AL-3473-01A-01D-1252-08	15707135	53385207	5743776	81	5351											
PLK1S1	55857	broad.mit.edu;ucsc.edu	37	20	21143713	21143713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	21143713	C	T	21143713	3	4	83	1	0	0	0	0	1	0	0	0	12102	739	26	2	1287	2	PLK1S1	20	21143713	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08		21143713	41881807	82	5352											
XRN2	22803	hgsc.bcm.edu	37	20	21367553	21367553	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	21367553	C	G	21367553	3	3	83	1	0	0	0	0	1	0	0	0	17472	507	18	4	2810	4	XRN2	20	21367553	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	223840	21367553	41657967	83	5353											
MYH7B	57644	broad.mit.edu;bcgsc.ca	37	20	33577862	33577862	+	Silent	SNP	C	C	T	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	T	33577862	C	T	33577862	2	4	83	1	0	0	0	0	0	0	0	1	10047	680	24	2		2	MYH7B	20	33577862	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	12210309	33577862	29447658	84	5354											
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47675025	47675025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	47675025	C	A	47675025	3	1	83	1	0	0	0	0	1	0	0	0	3932	711	25	4	27	4	CSE1L	20	47675025	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	14097163	47675025	15350495	85	5355											
ZNF512B	57473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62598869	62598870	+	Missense_Mutation	DNP	CG	CG	AA	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	AA	62598870	CG	AA	62598869	3	1	83	1	0	0	0	0	1	0	0	0	17969	639	23	4	2609	4	ZNF512B	20	62598869	Missense_Mutation	DNP	CG	TCGA-AL-3473-01A-01D-1252-08	14923844	62598869	426651	86	5356											
DSCAM	1826	broad.mit.edu;bcgsc.ca	37	21	41447083	41447083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	41447083	T	C	41447083	3	2	83	1	0	0	0	0	1	0	0	0	4770	1725	60	3	1297	3	DSCAM	21	41447083	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		41447083	6682812	87	5357											
TRIOBP	11078	broad.mit.edu	37	22	38129406	38129406	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	-	38129406	C	-	38129406	7	5	83	1	0	1	0	1	0	0	0	0	16565	739	26	0	4071	0	TRIOBP	22	38129406	Frame_Shift_Del	DEL	C	TCGA-AL-3473-01A-01D-1252-08		38129406	13175160	88	5358											
RLIM	51132	hgsc.bcm.edu	37	X	73811841	73811841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	C	73811841	T	C	73811841	3	2	83	1	0	0	0	0	1	0	0	0	13403	1406	49	3	569	3	RLIM	23	73811841	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		73811841	81458719	89	5359											
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	107433650	107433650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	G	107433650	T	G	107433650	3	3	83	1	0	0	0	0	1	0	0	0	3697	1606	56	5	3778	5	COL4A6	23	107433650	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	33621809	107433650	47836910	90	5360											
FLNA	2316	ucsc.edu	37	X	153588776	153588776	+	Silent	SNP	G	G	A	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	A	153588776	G	A	153588776	2	1	83	1	0	0	0	0	0	0	0	1	5940	1103	39	1		1	FLNA	23	153588776	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	46155126	153588776	1681784	91	5361											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8415616	8415616	+	Silent	SNP	G	G	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	8415616	G	T	8415616	2	4	84	1	0	0	0	0	0	0	0	1	13244	1335	47	4		4	RERE	1	8415616	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08		8415616	240835005	1	5362											
TSPAN2	10100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115601516	115601516	+	Silent	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	115601516	G	A	115601516	2	1	84	1	0	0	0	0	0	0	0	1	16656	987	35	2		2	TSPAN2	1	115601516	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08	107185900	115601516	133649105	2	5363											
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183885638	183885638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	183885638	G	C	183885638	3	2	84	1	0	0	0	0	1	0	0	0	13289	1000	35	4	1974	4	RGL1	1	183885638	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	68284122	183885638	65364983	3	5364											
BIRC6	57448	hgsc.bcm.edu	37	2	32664736	32664736	+	Silent	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	32664736	T	C	32664736	2	2	84	1	0	0	0	0	0	0	0	1	1438	1509	53	3		3	BIRC6	2	32664736	Silent	SNP	T	TCGA-AL-7173-01A-11D-2136-08		32664736	210534637	4	5365											
ZFP36L2	678	hgsc.bcm.edu	37	2	43451957	43451957	+	Missense_Mutation	SNP	G	G	A	rs149290349		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	43451957	G	A	43451957	3	1	84	1	0	0	0	0	1	0	0	0	17659	971	34	2	502	2	ZFP36L2	2	43451957	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	10787221	43451957	199747416	5	5366											
ANKRD36B	57730	hgsc.bcm.edu	37	2	98177298	98177298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	98177298	C	G	98177298	3	3	84	1	0	0	0	0	1	0	0	0	666	912	32	4	3420	4	ANKRD36B	2	98177298	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	54725341	98177298	145022075	6	5367											
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	180016091	180016091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	180016091	T	A	180016091	3	1	84	1	0	0	0	0	1	0	0	0	14140	1667	58	5	1745	5	SESTD1	2	180016091	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	81838793	180016091	63183282	7	5368											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225422410	225422410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	225422410	A	G	225422410	3	3	84	1	0	0	0	0	1	0	0	0	4058	420	15	3	2136	3	CUL3	2	225422410	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	45406319	225422410	17776963	8	5369											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	225449722	225449722	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	225449722	G	T	225449722	4	4	84	1	0	0	0	0	0	1	0	0	4058	1059	37	4	2365	4	CUL3	2	225449722	Nonsense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	27312	225449722	17749651	9	5370											
CRBN	51185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	3209360	3209360	+	Silent	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	3209360	T	C	3209360	2	2	84	1	0	0	0	0	0	0	0	1	3853	1548	54	3		3	CRBN	3	3209360	Silent	SNP	T	TCGA-AL-7173-01A-11D-2136-08		3209360	194813070	10	5371											
CAPN7	23473	hgsc.bcm.edu	37	3	15288291	15288291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	15288291	T	C	15288291	3	2	84	1	0	0	0	0	1	0	0	0	2633	1764	61	3	2133	3	CAPN7	3	15288291	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	12078931	15288291	182734139	11	5372											
ACAD9	28976	hgsc.bcm.edu	37	3	128612493	128612493	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	128612493	G	C	128612493	3	2	84	1	0	0	0	0	1	0	0	0	111	943	33	4	350	4	ACAD9	3	128612493	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	113324202	128612493	69409937	12	5373											
COMMD2	51122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	149468478	149468478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	149468478	C	T	149468478	3	4	84	1	0	0	0	0	1	0	0	0	3718	884	31	1	218	1	COMMD2	3	149468478	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	20855985	149468478	48553952	13	5374											
FETUB	26998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186362554	186362554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	186362554	A	G	186362554	3	3	84	1	0	0	0	0	1	0	0	0	5828	333	12	3	453	3	FETUB	3	186362554	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	36894076	186362554	11659876	14	5375											
ST6GAL1	6480	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	186790685	186790685	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	-	186790685	G	-	186790685	7	5	84	1	0	1	0	1	0	0	0	0	15233	1001	35	0	764	0	ST6GAL1	3	186790685	Frame_Shift_Del	DEL	G	TCGA-AL-7173-01A-11D-2136-08	428131	186790685	11231745	15	5376											
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	110865158	110865158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	110865158	A	T	110865158	3	4	84	1	0	0	0	0	1	0	0	0	4964	72	3	5	684	5	EGF	4	110865158	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08		110865158	80289118	16	5377											
INPP4B	8821	hgsc.bcm.edu	37	4	143159034	143159034	+	Silent	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	143159034	A	G	143159034	2	3	84	1	0	0	0	0	0	0	0	1	7760	358	13	3		3	INPP4B	4	143159034	Silent	SNP	A	TCGA-AL-7173-01A-11D-2136-08	32293876	143159034	47995242	17	5378											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37187887	37187887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	37187887	G	C	37187887	3	2	84	1	0	0	0	0	1	0	0	0	2303	1174	41	4	5848	4	C5orf42	5	37187887	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08		37187887	143727373	18	5379											
C7	730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	40964972	40964972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	40964972	C	G	40964972	3	3	84	1	0	0	0	0	1	0	0	0	2377	827	29	4	1933	4	C7	5	40964972	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	3777085	40964972	139950288	19	5380											
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	52204750	52204750	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	-	52204750	T	-	52204750	7	5	84	1	0	1	0	1	0	0	0	0	7879	1493	52	0	1528	0	ITGA1	5	52204750	Frame_Shift_Del	DEL	T	TCGA-AL-7173-01A-11D-2136-08	11239778	52204750	128710510	20	5381											
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	145552256	145552256	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	-	145552256	T	-	145552256	7	5	84	1	0	1	0	1	0	0	0	0	8641	1490	52	0	3443	0	LARS	5	145552256	Frame_Shift_Del	DEL	T	TCGA-AL-7173-01A-11D-2136-08	93347506	145552256	35363004	21	5382											
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147510840	147510840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	147510840	G	C	147510840	3	2	84	1	0	0	0	0	1	0	0	0	15074	942	33	4	3211	4	SPINK5	5	147510840	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	1958584	147510840	33404420	22	5383											
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	6	57246849	57246850	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	TT	57246850	GG	TT	57246849	3	4	84	1	0	0	0	0	1	0	0	0	12501	1335	47	4	598	4	PRIM2	6	57246849	Missense_Mutation	DNP	GG	TCGA-AL-7173-01A-11D-2136-08		57246849	113868218	23	5384											
HOXA1	3198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27134334	27134334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	27134334	C	T	27134334	3	4	84	1	0	0	0	0	1	0	0	0	7295	864	30	2	278	2	HOXA1	7	27134334	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		27134334	132004329	24	5385											
GTF2I	2969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	74146900	74146900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	74146900	G	C	74146900	3	2	84	1	0	0	0	0	1	0	0	0	6874	1001	35	4	1255	4	GTF2I	7	74146900	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	47012566	74146900	84991763	25	5386											
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	78131031	78131031	+	Silent	SNP	C	C	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	78131031	C	A	78131031	2	1	84	1	0	0	0	0	0	0	0	1	9198	465	17	4		4	MAGI2	7	78131031	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	3984131	78131031	81007632	26	5387											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82763823	82763823	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	82763823	C	G	82763823	3	3	84	1	0	0	0	0	1	0	0	0	11590	797	28	4	12494	4	PCLO	7	82763823	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	4632792	82763823	76374840	27	5388											
CYP3A7	1551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99328744	99328744	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	99328744	T	A	99328744	4	1	84	1	0	0	0	0	0	1	0	0	4183	1792	62	5	1456	5	CYP3A7	7	99328744	Nonsense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	16564921	99328744	59809919	28	5389											
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	101845410	101845410	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	101845410	A	T	101845410	3	4	84	1	0	0	0	0	1	0	0	0	4066	159	6	5	2970	5	CUX1	7	101845410	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	2516666	101845410	57293253	29	5390											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116417463	116417463	+	Missense_Mutation	SNP	C	C	T	rs121913244		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	116417463	C	T	116417463	3	4	84	1	0	0	0	0	1	0	0	0	9492	826	29	2	3392	2	MET	7	116417463	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	14572053	116417463	42721200	30	5391											
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142658089	142658089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	142658089	C	A	142658089	3	1	84	1	0	0	0	0	1	0	0	0	8149	855	30	4	1936	4	KEL	7	142658089	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	26240626	142658089	16480574	31	5392											
OR2A7	401427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	143956670	143956670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	143956670	C	T	143956670	3	4	84	1	0	0	0	0	1	0	0	0	10989	536	19	1	883	1	OR2A7	7	143956670	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	1298581	143956670	15181993	32	5393											
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101152996	101152996	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	101152996	C	G	101152996	3	3	84	1	0	0	0	0	1	0	0	0	5759	855	30	4	656	4	FBXO43	8	101152996	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		101152996	45211026	33	5394											
CPSF1	29894	hgsc.bcm.edu	37	8	145626922	145626922	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	145626922	C	G	145626922	3	3	84	1	0	0	0	0	1	0	0	0	3826	710	25	4	4263	4	CPSF1	8	145626922	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	44473926	145626922	737100	34	5395											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	14801824	14801824	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	14801824	C	G	14801824	3	3	84	1	0	0	0	0	1	0	0	0	6051	478	17	4	3141	4	FREM1	9	14801824	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		14801824	126411607	35	5396											
FCN1	2219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137801883	137801883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	137801883	G	C	137801883	3	2	84	1	0	0	0	0	1	0	0	0	5798	933	33	4	242	4	FCN1	9	137801883	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	123000059	137801883	3411548	36	5397											
LHX3	8022	ucsc.edu	37	9	139091693	139091693	+	Silent	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	139091693	C	T	139091693	2	4	84	1	0	0	0	0	0	0	0	1	8779	581	21	2		2	LHX3	9	139091693	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	1289810	139091693	2121738	37	5398											
PLAU	5328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	75672687	75672687	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	75672687	T	A	75672687	3	1	84	1	0	0	0	0	1	0	0	0	12029	1667	58	5	251	5	PLAU	10	75672687	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		75672687	59862060	38	5399											
RRP8	23378	ucsc.edu	37	11	6622569	6622569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	6622569	C	T	6622569	3	4	84	1	0	0	0	0	1	0	0	0	13703	739	26	2	663	2	RRP8	11	6622569	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		6622569	128383947	39	5400											
WDR74	54663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62606983	62606983	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	62606983	C	G	62606983	3	3	84	1	0	0	0	0	1	0	0	0	17336	825	29	4	1141	4	WDR74	11	62606983	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	55984414	62606983	72399533	40	5401											
ESRRA	2101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64074935	64074935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	64074935	C	A	64074935	3	1	84	1	0	0	0	0	1	0	0	0	5262	855	30	4	286	4	ESRRA	11	64074935	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	1467952	64074935	70931581	41	5402											
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74915493	74915493	+	Silent	SNP	C	C	T	rs192050675		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	74915493	C	T	74915493	2	4	84	1	0	0	0	0	0	0	0	1	14740	883	31	1		1	SLCO2B1	11	74915493	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	10840558	74915493	60091023	42	5403											
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102822873	102822873	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	102822873	C	G	102822873	3	3	84	1	0	0	0	0	1	0	0	0	9659	835	29	4	772	4	MMP13	11	102822873	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	27907380	102822873	32183643	43	5404											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2910328	2910328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	2910328	G	A	2910328	3	1	84	1	0	0	0	0	1	0	0	0	5917	1233	43	2	1112	2	FKBP4	12	2910328	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08		2910328	130941567	44	5405											
LRRC23	10233	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	7023220	7023220	+	Silent	SNP	A	A	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	7023220	A	C	7023220	2	2	84	1	0	0	0	0	0	0	0	1	8985	175	7	5		5	LRRC23	12	7023220	Silent	SNP	A	TCGA-AL-7173-01A-11D-2136-08	4112892	7023220	126828675	45	5406											
CD163	9332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	7640255	7640255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	7640255	G	A	7640255	3	1	84	1	0	0	0	0	1	0	0	0	2969	1058	37	1	1756	1	CD163	12	7640255	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	617035	7640255	126211640	46	5407											
MARCH9	92979	hgsc.bcm.edu	37	12	58149446	58149446	+	Silent	SNP	C	C	T	rs1689582		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	58149446	C	T	58149446	2	4	84	1	0	0	0	0	0	0	0	1	9315	784	28	2		2	MARCH9	12	58149446	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	50509191	58149446	75702449	47	5408											
KERA	11081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	91449805	91449805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	91449805	G	C	91449805	3	2	84	1	0	0	0	0	1	0	0	0	8150	1261	44	4	812	4	KERA	12	91449805	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	33300359	91449805	42402090	48	5409											
SH2B3	10019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111885276	111885276	+	Silent	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	111885276	G	A	111885276	2	1	84	1	0	0	0	0	0	0	0	1	14242	1364	48	2		2	SH2B3	12	111885276	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08	20435471	111885276	21966619	49	5410											
DDX54	79039	hgsc.bcm.edu	37	12	113596868	113596868	+	Silent	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	113596868	G	C	113596868	2	2	84	1	0	0	0	0	0	0	0	1	4374	1190	42	4		4	DDX54	12	113596868	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08	1711592	113596868	20255027	50	5411											
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113610194	113610194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	113610194	A	G	113610194	3	3	84	1	0	0	0	0	1	0	0	0	4374	72	3	3	1445	3	DDX54	12	113610194	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	13326	113610194	20241701	51	5412											
CDK8	1024	broad.mit.edu;bcgsc.ca	37	13	26975735	26975736	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	-	26975736	GG	-	26975735	7	5	84	1	0	1	0	1	0	0	0	0	3152	1349	47	0	1289	0	CDK8	13	26975735	Frame_Shift_Del	DEL	GG	TCGA-AL-7173-01A-11D-2136-08		26975735	88194143	52	5413	58	2									
CDK8	1024	hgsc.bcm.edu;bcgsc.ca	37	13	26975738	26975738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	26975738	C	A	26975738	3	1	84	1	0	0	0	0	1	0	0	0	3152	565	20	4	1292	4	CDK8	13	26975738	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	3	26975738	88194140	53	5414	58	2									
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	60566699	60566699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	60566699	T	A	60566699	3	1	84	1	0	0	0	0	1	0	0	0	4522	1464	51	5	2644	5	DIAPH3	13	60566699	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	33590961	60566699	54603179	54	5415											
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24545747	24545747	+	Silent	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	24545747	G	A	24545747	2	1	84	1	0	0	0	0	0	0	0	1	3818	1103	39	1		1	CPNE6	14	24545747	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08		24545747	82803793	55	5416											
PAK6	56924	hgsc.bcm.edu	37	15	40557188	40557188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	40557188	A	G	40557188	3	3	84	1	0	0	0	0	1	0	0	0	11411	247	9	3	204	3	PAK6	15	40557188	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08		40557188	61974204	56	5417											
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65214185	65214185	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	-	65214185	A	-	65214185	7	5	84	1	0	1	0	1	0	0	0	0	624	349	13	0	347	0	ANKDD1A	15	65214185	Frame_Shift_Del	DEL	A	TCGA-AL-7173-01A-11D-2136-08	24656997	65214185	37317207	57	5418											
SEMA7A	8482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74708932	74708932	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	74708932	A	C	74708932	3	2	84	1	0	0	0	0	1	0	0	0	14056	159	6	5	1247	5	SEMA7A	15	74708932	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	9494747	74708932	27822460	58	5419											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	49670185	49670185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	49670185	T	C	49670185	3	2	84	1	0	0	0	0	1	0	0	0	17910	1464	51	3	996	3	ZNF423	16	49670185	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		49670185	40684568	59	5420											
PER1	5187	broad.mit.edu	37	17	8047060	8047060	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	8047060	T	G	8047060	3	3	84	1	0	0	0	0	1	0	0	0	11736	1696	59	5	1296	5	PER1	17	8047060	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		8047060	73148150	60	5421											
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18150655	18150655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	18150655	A	C	18150655	3	2	84	1	0	0	0	0	1	0	0	0	5932	246	9	5	1345	5	FLII	17	18150655	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	10103595	18150655	63044555	61	5422											
TAF15	8148	broad.mit.edu;bcgsc.ca	37	17	34149828	34149828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	34149828	C	T	34149828	3	4	84	1	0	0	0	0	1	0	0	0	15530	594	21	2	497	2	TAF15	17	34149828	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	15999173	34149828	47045382	62	5423											
ZPBP2	124626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38027753	38027753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	38027753	T	C	38027753	3	2	84	1	0	0	0	0	1	0	0	0	18232	1580	55	3	295	3	ZPBP2	17	38027753	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	3877925	38027753	43167457	63	5424											
TIMP2	7077	broad.mit.edu;bcgsc.ca	37	17	76867041	76867047	+	Frame_Shift_Del	DEL	GGGGGCC	GGGGGCC	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	GGGGGCC	GGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	-	76867047	GGGGGCC	-	76867041	7	5	84	1	0	1	0	1	0	0	0	0	15930	987	35	0	395	0	TIMP2	17	76867041	Frame_Shift_Del	DEL	GGGGGCC	TCGA-AL-7173-01A-11D-2136-08	38839288	76867041	4328169	64	5425											
PLVAP	83483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17476968	17476968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	17476968	T	C	17476968	3	2	84	1	0	0	0	0	1	0	0	0	12123	1464	51	3	942	3	PLVAP	19	17476968	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		17476968	41652015	65	5426											
APLP1	333	ucsc.edu	37	19	36361805	36361805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	36361805	C	T	36361805	3	4	84	1	0	0	0	0	1	0	0	0	778	652	23	1	309	1	APLP1	19	36361805	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	18884837	36361805	22767178	66	5427											
ZNF780A	284323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40581903	40581903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	40581903	G	C	40581903	3	2	84	1	0	0	0	0	1	0	0	0	18164	1000	35	4	1610	4	ZNF780A	19	40581903	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	4220098	40581903	18547080	67	5428											
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55449434	55449434	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	55449434	T	A	55449434	3	1	84	1	0	0	0	0	1	0	0	0	10489	1696	59	5	1034	5	NLRP7	19	55449434	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	14867531	55449434	3679549	68	5429											
NCOA5	57727	bcgsc.ca	37	20	44697260	44697260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	44697260	T	C	44697260	3	2	84	1	0	0	0	0	1	0	0	0	10239	1667	58	3	1376	3	NCOA5	20	44697260	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		44697260	18328260	69	5430											
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61982183	61982183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	61982183	T	C	61982183	3	2	84	1	0	0	0	0	1	0	0	0	3387	1464	51	3	1311	3	CHRNA4	20	61982183	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	17284923	61982183	1043337	70	5431											
ARFRP1	10139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62333531	62333531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	62333531	G	C	62333531	3	2	84	1	0	0	0	0	1	0	0	0	856	1020	36	4	322	4	ARFRP1	20	62333531	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	351348	62333531	691989	71	5432											
ZDHHC8	29801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	20130720	20130720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	20130720	C	T	20130720	3	4	84	1	0	0	0	0	1	0	0	0	17633	652	23	1	1605	1	ZDHHC8	22	20130720	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		20130720	31173846	72	5433											
PPIL2	23759	hgsc.bcm.edu	37	22	22039049	22039049	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	22039049	G	C	22039049	3	2	84	1	0	0	0	0	1	0	0	0	12337	933	33	4	599	4	PPIL2	22	22039049	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	1908329	22039049	29265517	73	5434											
MGAT3	4248	hgsc.bcm.edu;broad.mit.edu	37	22	39883780	39883780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	39883780	C	G	39883780	3	3	84	1	0	0	0	0	1	0	0	0	9551	855	30	4	430	4	MGAT3	22	39883780	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	17844731	39883780	11420786	74	5435											
ADSL	158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40745897	40745897	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	A	40745897	T	A	40745897	3	1	84	1	0	0	0	0	1	0	0	0	346	1435	50	5	221	5	ADSL	22	40745897	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	862117	40745897	10558669	75	5436											
PARVG	64098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	44581694	44581694	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	44581694	A	T	44581694	3	4	84	1	0	0	0	0	1	0	0	0	11477	72	3	5	92	5	PARVG	22	44581694	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	3835797	44581694	6722872	76	5437											
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50684494	50684494	+	Silent	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	G	50684494	A	G	50684494	2	3	84	1	0	0	0	0	0	0	0	1	7012	69	3	3		3	HDAC10	22	50684494	Silent	SNP	A	TCGA-AL-7173-01A-11D-2136-08	6102800	50684494	620072	77	5438											
PRKX	5613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	3544550	3544550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	3544550	G	C	3544550	3	2	84	1	0	0	0	0	1	0	0	0	12537	1000	35	4	367	4	PRKX	23	3544550	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08		3544550	151726010	78	5439											
KIAA2022	340533	broad.mit.edu	37	X	73961092	73961092	+	Silent	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	T	73961092	C	T	73961092	2	4	84	1	0	0	0	0	0	0	0	1	8276	680	24	2		2	KIAA2022	23	73961092	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	70416542	73961092	81309468	79	5440											
SYTL4	94121	hgsc.bcm.edu	37	X	99945081	99945081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	C	99945081	T	C	99945081	3	2	84	1	0	0	0	0	1	0	0	0	15497	1579	55	3	1256	3	SYTL4	23	99945081	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	25983989	99945081	55325479	80	5441											
SKI	6497	broad.mit.edu	37	1	2235396	2235397	+	Frame_Shift_Ins	INS	-	-	G	rs150033567	byFrequency	TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	4d253e9a-9140-4429-b6ee-974f840c42cb	G	2235397	-	G	2235396	7	5	85	1	0	1	1	0	0	0	0	0	14370	639	23	0	1343	0	SKI	1	2235396	Frame_Shift_Ins	INS	-	TCGA-AS-3777-01A-01D-0966-08		2235396	247015225	1	5442											
CD2	914	broad.mit.edu	37	1	117303238	117303238	+	Missense_Mutation	SNP	G	G	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	4d253e9a-9140-4429-b6ee-974f840c42cb	T	117303238	G	T	117303238	3	4	85	1	0	0	0	0	1	0	0	0	2981	962	34	4	607	4	CD2	1	117303238	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08	115067842	117303238	131947383	2	5443											
ARNT	405	broad.mit.edu	37	1	150804293	150804293	+	Splice_Site	SNP	C	C	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	150804293	C	T	150804293	5	4	85	1	0	0	0	0	0	0	1	0	965	521	18	2	1465	2	ARNT	1	150804293	Splice_Site	SNP	C	TCGA-AS-3777-01A-01D-0966-08	33501055	150804293	98446328	3	5444											
NUP210L	91181	broad.mit.edu	37	1	154067513	154067513	+	Silent	SNP	C	C	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	154067513	C	T	154067513	2	4	85	1	0	0	0	0	0	0	0	1	10768	639	23	1		1	NUP210L	1	154067513	Silent	SNP	C	TCGA-AS-3777-01A-01D-0966-08	3263220	154067513	95183108	4	5445											
MNDA	4332	broad.mit.edu	37	1	158815659	158815659	+	Missense_Mutation	SNP	T	T	C			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	C	158815659	T	C	158815659	3	2	85	1	0	0	0	0	1	0	0	0	9683	1435	50	3	867	3	MNDA	1	158815659	Missense_Mutation	SNP	T	TCGA-AS-3777-01A-01D-0966-08	4748146	158815659	90434962	5	5446											
NID1	4811	broad.mit.edu	37	1	236212062	236212062	+	Silent	SNP	G	G	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	236212062	G	A	236212062	2	1	85	1	0	0	0	0	0	0	0	1	10421	1078	38	1		1	NID1	1	236212062	Silent	SNP	G	TCGA-AS-3777-01A-01D-0966-08	77396403	236212062	13038559	6	5447											
QPCT	25797	broad.mit.edu	37	2	37586796	37586796	+	Missense_Mutation	SNP	C	C	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	37586796	C	T	37586796	3	4	85	1	0	0	0	0	1	0	0	0	12887	623	22	2	351	2	QPCT	2	37586796	Missense_Mutation	SNP	C	TCGA-AS-3777-01A-01D-0966-08		37586796	205612577	7	5448											
PELI1	57162	broad.mit.edu	37	2	64323337	64323337	+	Silent	SNP	T	T	C			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	C	64323337	T	C	64323337	2	2	85	1	0	0	0	0	0	0	0	1	11728	1770	62	3		3	PELI1	2	64323337	Silent	SNP	T	TCGA-AS-3777-01A-01D-0966-08	26736541	64323337	178876036	8	5449											
ARHGAP25	9938	broad.mit.edu	37	2	69046326	69046326	+	Missense_Mutation	SNP	G	G	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	69046326	G	A	69046326	3	1	85	1	0	0	0	0	1	0	0	0	874	1174	41	2	1149	2	ARHGAP25	2	69046326	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08	4722989	69046326	174153047	9	5450											
SCN1A	6323	broad.mit.edu	37	2	166903319	166903321	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	-	166903321	CTG	-	166903319	7	5	85	1	0	1	0	1	0	0	0	0	13927	912	32	0	4763	0	SCN1A	2	166903319	In_Frame_Del	DEL	CTG	TCGA-AS-3777-01A-01D-0966-08	97856993	166903319	76296054	10	5451											
ANKRD28	23243	broad.mit.edu	37	3	15726732	15726732	+	Splice_Site	SNP	C	C	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	15726732	C	A	15726732	5	1	85	1	0	0	0	0	0	0	1	0	656	521	18	4	893	4	ANKRD28	3	15726732	Splice_Site	SNP	C	TCGA-AS-3777-01A-01D-0966-08		15726732	182295698	11	5452											
RAB43	339122	broad.mit.edu	37	3	128840237	128840237	+	Silent	SNP	C	C	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	128840237	C	A	128840237	2	1	85	1	0	0	0	0	0	0	0	1	12958	523	19	4		4	RAB43	3	128840237	Silent	SNP	C	TCGA-AS-3777-01A-01D-0966-08	113113505	128840237	69182193	12	5453											
TFRC	7037	broad.mit.edu	37	3	195778819	195778819	+	Missense_Mutation	SNP	C	C	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	195778819	C	A	195778819	3	1	85	1	0	0	0	0	1	0	0	0	15824	564	20	4	9	4	TFRC	3	195778819	Missense_Mutation	SNP	C	TCGA-AS-3777-01A-01D-0966-08	66938582	195778819	2243611	13	5454											
ARAP2	116984	broad.mit.edu	37	4	36069579	36069579	+	Missense_Mutation	SNP	G	G	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	36069579	G	A	36069579	3	1	85	1	0	0	0	0	1	0	0	0	839	1144	40	1	53	1	ARAP2	4	36069579	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08		36069579	155084697	14	5455											
SLC12A2	6558	broad.mit.edu	37	5	127486938	127486938	+	Missense_Mutation	SNP	C	C	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	127486938	C	T	127486938	3	4	85	1	0	0	0	0	1	0	0	0	14396	768	27	1	2167	1	SLC12A2	5	127486938	Missense_Mutation	SNP	C	TCGA-AS-3777-01A-01D-0966-08		127486938	53428322	15	5456											
C6orf10	10665	broad.mit.edu	37	6	32260989	32260989	+	Silent	SNP	T	T	C			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	C	32260989	T	C	32260989	2	2	85	1	0	0	0	0	0	0	0	1	2319	1606	56	3		3	C6orf10	6	32260989	Silent	SNP	T	TCGA-AS-3777-01A-01D-0966-08		32260989	138854078	16	5457											
DEPDC7	91614	broad.mit.edu	37	11	33050304	33050304	+	Missense_Mutation	SNP	G	G	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	33050304	G	T	33050304	3	4	85	1	0	0	0	0	1	0	0	0	4446	1174	41	4	812	4	DEPDC7	11	33050304	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08		33050304	101956212	17	5458											
AHNAK	79026	broad.mit.edu	37	11	62291443	62291443	+	Missense_Mutation	SNP	G	G	C			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	C	62291443	G	C	62291443	3	2	85	1	0	0	0	0	1	0	0	0	414	1281	45	4	7346	4	AHNAK	11	62291443	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08	29241139	62291443	72715073	18	5459											
DSCAML1	57453	broad.mit.edu	37	11	117392010	117392010	+	Missense_Mutation	SNP	G	G	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	117392010	G	A	117392010	3	1	85	1	0	0	0	0	1	0	0	0	4771	1058	37	1	5225	1	DSCAML1	11	117392010	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08	55100567	117392010	17614506	19	5460											
TECTA	7007	broad.mit.edu	37	11	120984322	120984322	+	Missense_Mutation	SNP	G	G	A	rs150098939	byFrequency	TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	120984322	G	A	120984322	3	1	85	1	0	0	0	0	1	0	0	0	15759	1059	37	1	703	1	TECTA	11	120984322	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08	3592312	120984322	14022194	20	5461											
EMG1	10436	broad.mit.edu	37	12	7080212	7080213	+	RNA	INS	-	-	C	rs36063533		TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	4d253e9a-9140-4429-b6ee-974f840c42cb	C	7080213	-	C	7080212	6	5	85	0	1	1	1	0	0	0	0	0	5092	1722	60	0		0	EMG1	12	7080212	RNA	INS	-	TCGA-AS-3777-01A-01D-0966-08		7080212	126771683	21	5462											
KRT85	3891	broad.mit.edu	37	12	52760942	52760942	+	Missense_Mutation	SNP	C	C	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	52760942	C	T	52760942	3	4	85	1	0	0	0	0	1	0	0	0	8506	768	27	1	1311	1	KRT85	12	52760942	Missense_Mutation	SNP	C	TCGA-AS-3777-01A-01D-0966-08	45680730	52760942	81090953	22	5463											
ITGA5	3678	broad.mit.edu	37	12	54797447	54797447	+	Missense_Mutation	SNP	C	C	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	54797447	C	T	54797447	3	4	85	1	0	0	0	0	1	0	0	0	7886	739	26	2	1467	2	ITGA5	12	54797447	Missense_Mutation	SNP	C	TCGA-AS-3777-01A-01D-0966-08	2036505	54797447	79054448	23	5464											
UBC	7316	broad.mit.edu	37	12	125398295	125398296	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	-	125398296	AG	-	125398295	7	5	85	1	0	1	0	1	0	0	0	0	16854	188	7	0	2038	0	UBC	12	125398295	Frame_Shift_Del	DEL	AG	TCGA-AS-3777-01A-01D-0966-08	70600848	125398295	8453600	24	5465											
FREM2	341640	broad.mit.edu	37	13	39265811	39265811	+	Silent	SNP	C	C	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	39265811	C	T	39265811	2	4	85	1	0	0	0	0	0	0	0	1	6052	564	20	2		2	FREM2	13	39265811	Silent	SNP	C	TCGA-AS-3777-01A-01D-0966-08		39265811	75904067	25	5466											
MYO16	23026	broad.mit.edu	37	13	109379873	109379873	+	Missense_Mutation	SNP	C	C	T	rs150729745	by1000genomes	TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	109379873	C	T	109379873	3	4	85	1	0	0	0	0	1	0	0	0	10071	536	19	1	393	1	MYO16	13	109379873	Missense_Mutation	SNP	C	TCGA-AS-3777-01A-01D-0966-08	70114062	109379873	5790005	26	5467											
MAX	4149	broad.mit.edu	37	14	65544756	65544756	+	Splice_Site	SNP	T	T	C			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	C	65544756	T	C	65544756	5	2	85	1	0	0	0	0	0	0	1	0	9346	1594	55	3	536	3	MAX	14	65544756	Splice_Site	SNP	T	TCGA-AS-3777-01A-01D-0966-08		65544756	41804784	27	5468											
ARMC5	79798	broad.mit.edu	37	16	31476071	31476071	+	Missense_Mutation	SNP	A	A	C			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	4d253e9a-9140-4429-b6ee-974f840c42cb	C	31476071	A	C	31476071	3	2	85	1	0	0	0	0	1	0	0	0	954	43	2	5	1741	5	ARMC5	16	31476071	Missense_Mutation	SNP	A	TCGA-AS-3777-01A-01D-0966-08		31476071	58878682	28	5469											
SCARF1	8578	broad.mit.edu	37	17	1548956	1548957	+	In_Frame_Ins	INS	-	-	AGC	rs142617742	by1000genomes	TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01W-0886-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	4d253e9a-9140-4429-b6ee-974f840c42cb	AGC	1548957	-	AGC	1548956	7	5	85	1	0	1	1	0	0	0	0	0	13896	929	33	0	2500	0	SCARF1	17	1548956	In_Frame_Ins	INS	-	TCGA-AS-3777-01A-01D-0966-08		1548956	79646254	29	5470											
MYH2	4620	broad.mit.edu	37	17	10435042	10435042	+	Missense_Mutation	SNP	G	G	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	10435042	G	A	10435042	3	1	85	1	0	0	0	0	1	0	0	0	10042	1029	36	2	3296	2	MYH2	17	10435042	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08	8886086	10435042	70760168	30	5471											
NUFIP2	57532	broad.mit.edu	37	17	27620806	27620808	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	-	27620808	TTC	-	27620806	7	5	85	1	0	1	0	1	0	0	0	0	10756	1841	64	0	1831	0	NUFIP2	17	27620806	In_Frame_Del	DEL	TTC	TCGA-AS-3777-01A-01D-0966-08	17185764	27620806	53574404	31	5472											
TRIM37	4591	broad.mit.edu	37	17	57125063	57125063	+	Missense_Mutation	SNP	C	C	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	57125063	C	A	57125063	3	1	85	1	0	0	0	0	1	0	0	0	16523	826	29	4	1290	4	TRIM37	17	57125063	Missense_Mutation	SNP	C	TCGA-AS-3777-01A-01D-0966-08	29504257	57125063	24070147	32	5473											
SERPINB3	6317	broad.mit.edu	37	18	61324536	61324537	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	61324537	-	T	61324536	7	5	85	1	0	1	1	0	0	0	0	0	14115	913	32	0	604	0	SERPINB3	18	61324536	Frame_Shift_Ins	INS	-	TCGA-AS-3777-01A-01D-0966-08		61324536	16752712	33	5474											
SALL3	27164	broad.mit.edu	37	18	76753036	76753036	+	Missense_Mutation	SNP	G	G	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	76753036	G	A	76753036	3	1	85	1	0	0	0	0	1	0	0	0	13825	1232	43	2	1051	2	SALL3	18	76753036	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08	15428500	76753036	1324212	34	5475											
ADNP2	22850	broad.mit.edu	37	18	77895551	77895552	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	T	77895552	-	T	77895551	7	5	85	1	0	1	1	0	0	0	0	0	324	1377	48	0	2265	0	ADNP2	18	77895551	Frame_Shift_Ins	INS	-	TCGA-AS-3777-01A-01D-0966-08	1142515	77895551	181697	35	5476											
ATP9A	10079	broad.mit.edu	37	20	50226667	50226667	+	Missense_Mutation	SNP	G	G	C			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	C	50226667	G	C	50226667	3	2	85	1	0	0	0	0	1	0	0	0	1198	1000	35	4	554	4	ATP9A	20	50226667	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08		50226667	12798853	36	5477											
CXorf22	170063	broad.mit.edu	37	X	35969399	35969399	+	Missense_Mutation	SNP	G	G	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	35969399	G	A	35969399	3	1	85	1	0	0	0	0	1	0	0	0	4104	1319	46	2	826	2	CXorf22	23	35969399	Missense_Mutation	SNP	G	TCGA-AS-3777-01A-01D-0966-08		35969399	119301161	37	5478											
ALG13	79868	broad.mit.edu	37	X	111002972	111002972	+	Silent	SNP	G	G	A			TCGA-AS-3777-01A-01D-0966-08	TCGA-AS-3777-10A-01D-0966-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b771fd10-af27-4da6-aa24-7ecc2d1474e0	05cc3865-125d-4c09-b63a-b177ff676e78	A	111002972	G	A	111002972	2	1	85	1	0	0	0	0	0	0	0	1	515	1045	37	1		1	ALG13	23	111002972	Silent	SNP	G	TCGA-AS-3777-01A-01D-0966-08	75033573	111002972	44267588	38	5479											
ZMYM4	9202	broad.mit.edu	37	1	35836039	35836039	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	35836039	A	A	35836039	4	1	86	1	0	0	0	0	0	1	0	0	17714	838	29	4	1018	4	ZMYM4	1	35836039	Nonsense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08		35836039	213414582	1	5480	59	2									
ZMYM4	9202	broad.mit.edu;hgsc.bcm.edu	37	1	35836041	35836041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	35836041	G	T	35836041	3	4	86	1	0	0	0	0	1	0	0	0	17714	1029	36	4	1020	4	ZMYM4	1	35836041	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08	2	35836041	213414580	2	5481	59	2									
THRAP3	9967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36755101	36755101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	36755101	C	T	36755101	3	4	86	1	0	0	0	0	1	0	0	0	15886	913	32	2	1491	2	THRAP3	1	36755101	Missense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08	919060	36755101	212495520	3	5482											
SARS	6301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109772058	109772058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	109772058	A	G	109772058	3	3	86	1	0	0	0	0	1	0	0	0	13857	14	1	3	325	3	SARS	1	109772058	Missense_Mutation	SNP	A	TCGA-AS-3778-01A-01D-0966-08	73016957	109772058	139478563	4	5483											
RUSC1	23623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155300229	155300229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	155300229	G	T	155300229	3	4	86	1	0	0	0	0	1	0	0	0	13763	942	33	4	2741	4	RUSC1	1	155300229	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08	45528171	155300229	93950392	5	5484											
ZBTB41	360023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197168567	197168567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	197168567	T	C	197168567	3	2	86	1	0	0	0	0	1	0	0	0	17555	1551	54	3	1732	3	ZBTB41	1	197168567	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08	41868338	197168567	52082054	6	5485											
PPP1R15B	84919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	204378920	204378920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	204378920	T	A	204378920	3	1	86	1	0	0	0	0	1	0	0	0	12374	1606	56	5	529	5	PPP1R15B	1	204378920	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08	7210353	204378920	44871701	7	5486											
ITPKB	3707	broad.mit.edu;hgsc.bcm.edu	37	1	226834969	226834969	+	Silent	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	226834969	G	A	226834969	2	1	86	1	0	0	0	0	0	0	0	1	7925	1256	44	2		2	ITPKB	1	226834969	Silent	SNP	G	TCGA-AS-3778-01A-01D-0966-08	22456049	226834969	22415652	8	5487											
EHD3	30845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	31484489	31484489	+	Silent	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	31484489	G	A	31484489	2	1	86	1	0	0	0	0	0	0	0	1	4981	962	34	2		2	EHD3	2	31484489	Silent	SNP	G	TCGA-AS-3778-01A-01D-0966-08		31484489	211714884	9	5488											
CTNNA2	1496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	80136837	80136837	+	Silent	SNP	C	C	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	80136837	C	A	80136837	2	1	86	1	0	0	0	0	0	0	0	1	4015	760	27	4		4	CTNNA2	2	80136837	Silent	SNP	C	TCGA-AS-3778-01A-01D-0966-08	48652348	80136837	163062536	10	5489											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188268	10188269	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	10188269	-	C	10188268	7	5	86	1	0	1	1	0	0	0	0	0	17174	1306	46	0	417	0	VHL	3	10188268	Frame_Shift_Ins	INS	-	TCGA-AS-3778-01A-01D-0966-08		10188268	187834162	11	5490											
XPC	7508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	14200007	14200007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	14200007	T	A	14200007	3	1	86	1	0	0	0	0	1	0	0	0	17453	1435	50	5		5	XPC	3	14200007	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08	4011739	14200007	183822423	12	5491											
STAG1	10274	hgsc.bcm.edu;ucsc.edu	37	3	136141378	136141379	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	-	136141379	AC	-	136141378	7	5	86	1	0	1	0	1	0	0	0	0	15254	388	14	0	1929	0	STAG1	3	136141378	Frame_Shift_Del	DEL	AC	TCGA-AS-3778-01A-01D-0966-08	121941371	136141378	61881052	13	5492											
BCHE	590	hgsc.bcm.edu;ucsc.edu	37	3	165547909	165547915	+	Frame_Shift_Del	DEL	CTTCATT	CTTCATT	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	CTTCATT	CTTCATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	-	165547915	CTTCATT	-	165547909	7	5	86	1	0	1	0	1	0	0	0	0	1358	797	28	0	907	0	BCHE	3	165547909	Frame_Shift_Del	DEL	CTTCATT	TCGA-AS-3778-01A-01D-0966-08	29406531	165547909	32474521	14	5493											
PCDHB7	56129	broad.mit.edu;hgsc.bcm.edu	37	5	140554161	140554161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	140554161	C	T	140554161	3	4	86	1	0	0	0	0	1	0	0	0	11554	652	23	1	1747	1	PCDHB7	5	140554161	Missense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08		140554161	40361099	15	5494											
GPR115	221393	hgsc.bcm.edu;ucsc.edu	37	6	47680115	47680115	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	-	47680115	T	-	47680115	7	5	86	1	0	1	0	1	0	0	0	0	6639	1609	56	0	337	0	GPR115	6	47680115	Frame_Shift_Del	DEL	T	TCGA-AS-3778-01A-01D-0966-08		47680115	123434952	16	5495											
PKHD1	5314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	51935825	51935825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	51935825	G	T	51935825	3	4	86	1	0	0	0	0	1	0	0	0	11978	1348	47	4	11853	4	PKHD1	6	51935825	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08	4255710	51935825	119179242	17	5496											
TBX18	9096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	85447027	85447027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	85447027	G	T	85447027	3	4	86	1	0	0	0	0	1	0	0	0	15665	1165	41	4	627	4	TBX18	6	85447027	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08	33511202	85447027	85668040	18	5497											
RAET1G	353091	broad.mit.edu;hgsc.bcm.edu	37	6	150240312	150240312	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	150240312	T	A	150240312	3	1	86	1	0	0	0	0	1	0	0	0	13013	1780	62	5	518	5	RAET1G	6	150240312	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08	64793285	150240312	20874755	19	5498											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152711518	152711518	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	152711518	A	T	152711518	3	4	86	1	0	0	0	0	1	0	0	0	15457	69	3	5	18768	5	SYNE1	6	152711518	Missense_Mutation	SNP	A	TCGA-AS-3778-01A-01D-0966-08	2471206	152711518	18403549	20	5499											
MIOS	54468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	7636022	7636022	+	Silent	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	7636022	C	T	7636022	2	4	86	1	0	0	0	0	0	0	0	1	9596	784	28	2		2	MIOS	7	7636022	Silent	SNP	C	TCGA-AS-3778-01A-01D-0966-08		7636022	151502641	21	5500											
DPY19L1	23333	broad.mit.edu;hgsc.bcm.edu	37	7	34981390	34981390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	34981390	A	G	34981390	3	3	86	1	0	0	0	0	1	0	0	0	4742	333	12	3	590	3	DPY19L1	7	34981390	Missense_Mutation	SNP	A	TCGA-AS-3778-01A-01D-0966-08	27345368	34981390	124157273	22	5501											
LMOD2	442721	broad.mit.edu	37	7	123302309	123302309	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	123302309	A	A	123302309	3	1	86	1	0	0	0	0	1	0	0	0	8864	477	17	4	675	4	LMOD2	7	123302309	Missense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08	88320919	123302309	35836354	23	5502											
NOS3	4846	broad.mit.edu	37	7	150693876	150693876	+	Silent	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	150693876	A	A	150693876	2	1	86	1	0	0	0	0	0	0	0	1	10551	759	27	4		4	NOS3	7	150693876	Silent	SNP	C	TCGA-AS-3778-01A-01D-0966-08	27391567	150693876	8444787	24	5503											
VPS13B	157680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	100887766	100887766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	100887766	G	T	100887766	3	4	86	1	0	0	0	0	1	0	0	0	17202	1261	44	4	12377	4	VPS13B	8	100887766	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08		100887766	45476256	25	5504											
PKHD1L1	93035	broad.mit.edu	37	8	110441591	110441591	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	110441591	T	T	110441591	3	4	86	1	0	0	0	0	1	0	0	0	11979	1174	41	4	3125	4	PKHD1L1	8	110441591	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08	9553825	110441591	35922431	26	5505											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	114448936	114448936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	114448936	C	A	114448936	3	1	86	1	0	0	0	0	1	0	0	0	3948	536	19	4	11321	4	CSMD3	8	114448936	Missense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08	4007345	114448936	31915086	27	5506											
LRRC19	64922	hgsc.bcm.edu	37	9	26998211	26998211	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	-	26998211	T	-	26998211	7	5	86	1	0	1	0	1	0	0	0	0	8982	1493	52	0	1014	0	LRRC19	9	26998211	Frame_Shift_Del	DEL	T	TCGA-AS-3778-01A-01D-0966-08		26998211	114215220	28	5507											
SVIL	6840	hgsc.bcm.edu;ucsc.edu	37	10	29762797	29762805	+	In_Frame_Del	DEL	CGTCATCAG	CGTCATCAG	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	CGTCATCAG	CGTCATCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	-	29762805	CGTCATCAG	-	29762797	7	5	86	1	0	1	0	1	0	0	0	0	15433	639	23	0	1181	0	SVIL	10	29762797	In_Frame_Del	DEL	CGTCATCAG	TCGA-AS-3778-01A-01D-0966-08		29762797	105771950	29	5508											
ZFYVE27	118813	hgsc.bcm.edu;ucsc.edu	37	10	99504492	99504499	+	Frame_Shift_Del	DEL	GGTACTCA	GGTACTCA	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	GGTACTCA	GGTACTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	-	99504499	GGTACTCA	-	99504492	7	5	86	1	0	1	0	1	0	0	0	0	17681	1357	47	0	285	0	ZFYVE27	10	99504492	Frame_Shift_Del	DEL	GGTACTCA	TCGA-AS-3778-01A-01D-0966-08	69741695	99504492	36030255	30	5509											
SMC3	9126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	112356197	112356197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	112356197	T	G	112356197	3	3	86	1	0	0	0	0	1	0	0	0	14797	1754	61	5	2079	5	SMC3	10	112356197	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08	12851705	112356197	23178550	31	5510											
KCNC1	3746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	17793714	17793714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	17793714	T	C	17793714	3	2	86	1	0	0	0	0	1	0	0	0	8021	1435	50	3	1079	3	KCNC1	11	17793714	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08		17793714	117212802	32	5511											
FNBP4	23360	broad.mit.edu	37	11	47738988	47738988	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	47738988	A	A	47738988	3	1	86	1	0	0	0	0	1	0	0	0	5974	739	26	4	17	4	FNBP4	11	47738988	Missense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08	29945274	47738988	87267528	33	5512	60	2									
FNBP4	23360	broad.mit.edu	37	11	47738989	47738989	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	47738989	T	T	47738989	3	4	86	1	0	0	0	0	1	0	0	0	5974	594	21	2	18	2	FNBP4	11	47738989	Missense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08	1	47738989	87267527	34	5513	60	2									
RASGRP2	10235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64507132	64507132	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	64507132	G	C	64507132	3	2	86	1	0	0	0	0	1	0	0	0	13088	1280	45	4	1197	4	RASGRP2	11	64507132	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08	16768143	64507132	70499384	35	5514											
PCNXL3	399909	broad.mit.edu;hgsc.bcm.edu	37	11	65392741	65392741	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	65392741	A	T	65392741	3	4	86	1	0	0	0	0	1	0	0	0	11600	159	6	5	3085	5	PCNXL3	11	65392741	Missense_Mutation	SNP	A	TCGA-AS-3778-01A-01D-0966-08	885609	65392741	69613775	36	5515											
CSDA	8531	hgsc.bcm.edu	37	12	10862578	10862579	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	10862579	-	C	10862578	7	5	86	1	0	1	1	0	0	0	0	0	3929	43	2	0	425	0	CSDA	12	10862578	Frame_Shift_Ins	INS	-	TCGA-AS-3778-01A-01D-0966-08		10862578	122989317	37	5516											
KRT76	51350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53162498	53162498	+	Silent	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	53162498	C	T	53162498	2	4	86	1	0	0	0	0	0	0	0	1	8496	837	29	2		2	KRT76	12	53162498	Silent	SNP	C	TCGA-AS-3778-01A-01D-0966-08	42299920	53162498	80689397	38	5517											
KRT4	3851	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53207418	53207418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	53207418	T	C	53207418	3	2	86	1	0	0	0	0	1	0	0	0	8484	1609	56	3	1173	3	KRT4	12	53207418	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08	44920	53207418	80644477	39	5518											
XPOT	11260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	64827305	64827305	+	Silent	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	64827305	C	T	64827305	2	4	86	1	0	0	0	0	0	0	0	1	17462	711	25	2		2	XPOT	12	64827305	Silent	SNP	C	TCGA-AS-3778-01A-01D-0966-08	11619887	64827305	69024590	40	5519											
TRHDE	29953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	73056887	73056887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	73056887	C	T	73056887	3	4	86	1	0	0	0	0	1	0	0	0	16491	797	28	2	3061	2	TRHDE	12	73056887	Missense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08	8229582	73056887	60795008	41	5520											
NOS1	4842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117681127	117681127	+	Silent	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	117681127	C	T	117681127	2	4	86	1	0	0	0	0	0	0	0	1	10548	581	21	2		2	NOS1	12	117681127	Silent	SNP	C	TCGA-AS-3778-01A-01D-0966-08	44624240	117681127	16170768	42	5521											
NCOR2	9612	broad.mit.edu;ucsc.edu	37	12	124968161	124968161	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	124968161	A	A	124968161	3	1	86	1	0	0	0	0	1	0	0	0	10243	855	30	4	7356	4	NCOR2	12	124968161	Missense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08	7287034	124968161	8883734	43	5522											
POLE	5426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133219900	133219900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	133219900	G	C	133219900	3	2	86	1	0	0	0	0	1	0	0	0	12203	932	33	4	2459	4	POLE	12	133219900	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08	8251739	133219900	631995	44	5523											
NYNRIN	57523	hgsc.bcm.edu;ucsc.edu	37	14	24885703	24885708	+	In_Frame_Del	DEL	GCAGGA	GCAGGA	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	GCAGGA	GCAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	-	24885708	GCAGGA	-	24885703	7	5	86	1	0	1	0	1	0	0	0	0	10803	1319	46	0	4778	0	NYNRIN	14	24885703	In_Frame_Del	DEL	GCAGGA	TCGA-AS-3778-01A-01D-0966-08		24885703	82463837	45	5524											
RPS29	6235	broad.mit.edu;hgsc.bcm.edu	37	14	50053045	50053045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	50053045	T	C	50053045	3	2	86	1	0	0	0	0	1	0	0	0	13655	1638	57	3	208	3	RPS29	14	50053045	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08	25167342	50053045	57296495	46	5525											
DLGAP5	9787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55625310	55625310	+	Silent	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	55625310	T	C	55625310	2	2	86	1	0	0	0	0	0	0	0	1	4565	1799	63	3		3	DLGAP5	14	55625310	Silent	SNP	T	TCGA-AS-3778-01A-01D-0966-08	5572265	55625310	51724230	47	5526											
C14orf149	0	hgsc.bcm.edu;ucsc.edu	37	14	59939728	59939729	+	Frame_Shift_Ins	INS	-	-	ATAAA	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	ATAAA	59939729	-	ATAAA	59939728	7	5	86	1	0	1	1	0	0	0	0	0	1754	1744	61	0	48	0	C14orf149	14	59939728	Frame_Shift_Ins	INS	-	TCGA-AS-3778-01A-01D-0966-08	4314418	59939728	47409812	48	5527											
DYNC1H1	1778	broad.mit.edu;hgsc.bcm.edu	37	14	102466737	102466737	+	Splice_Site	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	102466737	G	A	102466737	5	1	86	1	0	0	0	0	0	0	1	0	4843	1275	44	2	4145	2	DYNC1H1	14	102466737	Splice_Site	SNP	G	TCGA-AS-3778-01A-01D-0966-08	42527009	102466737	4882803	49	5528											
RPUSD2	27079	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40866017	40866017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	40866017	G	C	40866017	3	2	86	1	0	0	0	0	1	0	0	0	13680	1000	35	4	1205	4	RPUSD2	15	40866017	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08		40866017	61665375	50	5529											
GCOM1	145781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	57913819	57913819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	57913819	T	C	57913819	3	2	86	1	0	0	0	0	1	0	0	0	6311	1821	63	3	346	3	GCOM1	15	57913819	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08	17047802	57913819	44617573	51	5530											
TLN2	83660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63030443	63030443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	63030443	A	G	63030443	3	3	86	1	0	0	0	0	1	0	0	0	15960	362	13	3	3704	3	TLN2	15	63030443	Missense_Mutation	SNP	A	TCGA-AS-3778-01A-01D-0966-08	5116624	63030443	39500949	52	5531											
MEF2A	4205	broad.mit.edu	37	15	100252892	100252892	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	-	100252892	-	-	100252892	7	5	86	1	0	1	0	1	0	0	0	0	9462	117	5	0	1614	0	MEF2A	15	100252892	Frame_Shift_Del	DEL	A	TCGA-AS-3778-01A-01D-0966-08	37222449	100252892	2278500	53	5532											
PHLPP2	23035	broad.mit.edu;ucsc.edu	37	16	71682850	71682850	+	Silent	SNP	A	G	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	71682850	G	G	71682850	2	3	86	1	0	0	0	0	0	0	0	1	11862	175	7	3		3	PHLPP2	16	71682850	Silent	SNP	A	TCGA-AS-3778-01A-01D-0966-08		71682850	18671903	54	5533											
CHRNE	1145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4804298	4804298	+	Silent	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	4804298	G	A	4804298	2	1	86	1	0	0	0	0	0	0	0	1	3397	1165	41	2		2	CHRNE	17	4804298	Silent	SNP	G	TCGA-AS-3778-01A-01D-0966-08		4804298	76390912	55	5534											
GUCY2D	3000	broad.mit.edu;ucsc.edu	37	17	7909785	7909785	+	Silent	SNP	T	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	7909785	A	A	7909785	2	1	86	1	0	0	0	0	0	0	0	1	6904	1567	55	5		5	GUCY2D	17	7909785	Silent	SNP	T	TCGA-AS-3778-01A-01D-0966-08	3105487	7909785	73285425	56	5535											
SRCIN1	80725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36708271	36708271	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	C	36708271	A	C	36708271	3	2	86	1	0	0	0	0	1	0	0	0	15148	72	3	5	997	5	SRCIN1	17	36708271	Missense_Mutation	SNP	A	TCGA-AS-3778-01A-01D-0966-08	28798486	36708271	44486939	57	5536											
UTP18	51096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	49340732	49340732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	49340732	A	G	49340732	3	3	86	1	0	0	0	0	1	0	0	0	17110	333	12	3	446	3	UTP18	17	49340732	Missense_Mutation	SNP	A	TCGA-AS-3778-01A-01D-0966-08	12632461	49340732	31854478	58	5537											
CLTC	1213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57733326	57733327	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	57733327	-	T	57733326	7	5	86	1	0	1	1	0	0	0	0	0	3568	101	4	0	929	0	CLTC	17	57733326	Frame_Shift_Ins	INS	-	TCGA-AS-3778-01A-01D-0966-08	8392594	57733326	23461884	59	5538											
SLC26A11	284129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78196561	78196561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	78196561	C	G	78196561	3	3	86	1	0	0	0	0	1	0	0	0	14529	912	32	4	348	4	SLC26A11	17	78196561	Missense_Mutation	SNP	C	TCGA-AS-3778-01A-01D-0966-08	20463235	78196561	2998649	60	5539											
CASP14	23581	broad.mit.edu	37	19	15164766	15164766	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	15164766	T	T	15164766	4	4	86	1	0	0	0	0	0	1	0	0	2672	1001	35	4	410	4	CASP14	19	15164766	Nonsense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08		15164766	43964217	61	5540											
SLC7A10	56301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	33702235	33702235	+	Splice_Site	SNP	C	C	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	33702235	C	G	33702235	5	3	86	1	0	0	0	0	0	0	1	0	14706	927	32	4	679	4	SLC7A10	19	33702235	Splice_Site	SNP	C	TCGA-AS-3778-01A-01D-0966-08	18537469	33702235	25426748	62	5541											
CYTH2	9266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	48977501	48977501	+	Missense_Mutation	SNP	G	G	A	rs1804728	alternate_allele	TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	48977501	G	A	48977501	3	1	86	1	0	0	0	0	1	0	0	0	4206	1377	48	2	636	2	CYTH2	19	48977501	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08	15275266	48977501	10151482	63	5542											
ACSS1	84532	broad.mit.edu	37	20	25038626	25038633	+	Frame_Shift_Del	DEL	GCCGCCCT	-	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	GCCGCCCT	GCCGCCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	-	25038633	-	-	25038626	7	5	86	1	0	1	0	1	0	0	0	0	188	1203	42	0	2012	0	ACSS1	20	25038626	Frame_Shift_Del	DEL	GCCGCCCT	TCGA-AS-3778-01A-01D-0966-08		25038626	37986894	64	5543											
KIF3B	9371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30918079	30918079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	A	30918079	G	A	30918079	3	1	86	1	0	0	0	0	1	0	0	0	8308	1319	46	2	2130	2	KIF3B	20	30918079	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08	5879453	30918079	32107441	65	5544											
KCNQ2	3785	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62038115	62038115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	62038115	A	G	62038115	3	3	86	1	0	0	0	0	1	0	0	0	8090	101	4	3	121	3	KCNQ2	20	62038115	Missense_Mutation	SNP	A	TCGA-AS-3778-01A-01D-0966-08	31120036	62038115	987405	66	5545											
PLA2G6	8398	broad.mit.edu	37	22	38536025	38536025	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	G	38536025	G	G	38536025	3	3	86	1	0	0	0	0	1	0	0	0	12015	1638	57	5	1711	5	PLA2G6	22	38536025	Missense_Mutation	SNP	T	TCGA-AS-3778-01A-01D-0966-08		38536025	12768541	67	5546											
CT47B1	643311	broad.mit.edu	37	X	120009111	120009111	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	T	120009111	T	T	120009111	3	4	86	1	0	0	0	0	1	0	0	0	3991	1136	40	4	493	4	CT47B1	23	120009111	Missense_Mutation	SNP	G	TCGA-AS-3778-01A-01D-0966-08		120009111	35261449	68	5547											
RBMX	27316	hgsc.bcm.edu	37	X	135956571	135956572	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	GG	135956572	-	GG	135956571	7	5	86	1	0	1	1	0	0	0	0	0	13164	1451	51	0	328	0	RBMX	23	135956571	Frame_Shift_Ins	INS	-	TCGA-AS-3778-01A-01D-0966-08	15947460	135956571	19313989	69	5548											
WDR65	149465	hgsc.bcm.edu;bcgsc.ca	37	1	43685098	43685098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	43685098	A	G	43685098	3	3	87	1	0	0	0	0	1	0	0	0	17328	116	4	3		3	WDR65	1	43685098	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		43685098	205565523	1	5549											
SPATA6	54558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	48918785	48918785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	48918785	C	T	48918785	3	4	87	1	0	0	0	0	1	0	0	0	15025	536	19	1	1444	1	SPATA6	1	48918785	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	5233687	48918785	200331836	2	5550											
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	89352944	89352944	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	89352944	C	G	89352944	3	3	87	1	0	0	0	0	1	0	0	0	6862	695	24	4	850	4	GTF2B	1	89352944	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	40434159	89352944	159897677	3	5551											
C1orf146	388649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	92707844	92707844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	92707844	A	C	92707844	3	2	87	1	0	0	0	0	1	0	0	0	2005	101	4	5	148	5	C1orf146	1	92707844	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	3354900	92707844	156542777	4	5552											
AMPD2	271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110170816	110170816	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	110170816	C	G	110170816	3	3	87	1	0	0	0	0	1	0	0	0	586	652	23	4	1433	4	AMPD2	1	110170816	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	17462972	110170816	139079805	5	5553											
ZNF697	90874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120165395	120165395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	120165395	G	A	120165395	3	1	87	1	0	0	0	0	1	0	0	0	18112	1087	38	1	70	1	ZNF697	1	120165395	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	9994579	120165395	129085226	6	5554											
CREG1	8804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167515417	167515417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	167515417	T	A	167515417	3	1	87	1	0	0	0	0	1	0	0	0	3866	1406	49	5	90	5	CREG1	1	167515417	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	47350022	167515417	81735204	7	5555											
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37455042	37455042	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	37455042	T	A	37455042	3	1	87	1	0	0	0	0	1	0	0	0	3206	1841	64	5	1930	5	CEBPZ	2	37455042	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10		37455042	205744331	8	5556											
GCC2	9648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109087879	109087879	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	109087879	T	A	109087879	3	1	87	1	0	0	0	0	1	0	0	0	6293	1722	60	5	2116	5	GCC2	2	109087879	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	71632837	109087879	134111494	9	5557											
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	159459582	159459582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	159459582	C	A	159459582	3	1	87	1	0	0	0	0	1	0	0	0	11994	811	28	4	256	4	PKP4	2	159459582	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	50371703	159459582	83739791	10	5558											
GPR155	151556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	175331330	175331330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	175331330	A	G	175331330	3	3	87	1	0	0	0	0	1	0	0	0	6667	131	5	3	1448	3	GPR155	2	175331330	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	15871748	175331330	67868043	11	5559											
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203972839	203972839	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	203972839	G	A	203972839	4	1	87	1	0	0	0	0	0	1	0	0	10195	1357	47	2	1836	2	NBEAL1	2	203972839	Nonsense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	28641509	203972839	39226534	12	5560											
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219222408	219222408	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	219222408	C	T	219222408	2	4	87	1	0	0	0	0	0	0	0	1	2183	668	24	2		2	C2orf62	2	219222408	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	15249569	219222408	23976965	13	5561											
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49161312	49161312	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	49161312	G	C	49161312	3	2	87	1	0	0	0	0	1	0	0	0	8618	1328	46	4	1786	4	LAMB2	3	49161312	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10		49161312	148861118	14	5562											
MST1	4485	broad.mit.edu	37	3	49723112	49723112	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	-	49723112	T	-	49723112	7	5	87	1	0	1	0	1	0	0	0	0	9897	1725	60	0	905	0	MST1	3	49723112	Frame_Shift_Del	DEL	T	TCGA-AT-A5NU-01A-11D-A28G-10	561800	49723112	148299318	15	5563											
CRYBG3	131544	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97595925	97595925	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	97595925	A	T	97595925	4	4	87	1	0	0	0	0	0	1	0	0	3915	131	5	5	45	5	CRYBG3	3	97595925	Nonsense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	47872813	97595925	100426505	16	5564											
PARP15	165631	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122354765	122354765	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	122354765	C	T	122354765	4	4	87	1	0	0	0	0	0	1	0	0	11466	760	27	1	1970	1	PARP15	3	122354765	Nonsense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	24758840	122354765	75667665	17	5565											
EHHADH	1962	ucsc.edu	37	3	184935956	184935956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	184935956	T	A	184935956	3	1	87	1	0	0	0	0	1	0	0	0	4984	1783	62	5	1647	5	EHHADH	3	184935956	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	62581191	184935956	13086474	18	5566											
MUC4	4585	bcgsc.ca	37	3	195515038	195515038	+	Missense_Mutation	SNP	G	G	A	rs201206859		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	195515038	G	A	195515038	3	1	87	1	0	0	0	0	1	0	0	0	9985	1000	35	2		2	MUC4	3	195515038	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	10579082	195515038	2507392	19	5567											
MUC4	4585	bcgsc.ca	37	3	195515134	195515134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	195515134	G	T	195515134	3	4	87	1	0	0	0	0	1	0	0	0	9985	1000	35	4		4	MUC4	3	195515134	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	96	195515134	2507296	20	5568											
MAEA	10296	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1316285	1316285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	1316285	G	T	1316285	3	4	87	1	0	0	0	0	1	0	0	0	9160	933	33	4	587	4	MAEA	4	1316285	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10		1316285	189837991	21	5569											
SLIT2	9353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	20535255	20535255	+	Silent	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	20535255	T	A	20535255	2	1	87	1	0	0	0	0	0	0	0	1	14753	1683	59	5		5	SLIT2	4	20535255	Silent	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	19218970	20535255	170619021	22	5570											
CCDC149	91050	broad.mit.edu	37	4	24810216	24810216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	24810216	A	C	24810216	3	2	87	1	0	0	0	0	1	0	0	0	2785	188	7	5	208	5	CCDC149	4	24810216	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	4274961	24810216	166344060	23	5571											
DSPP	1834	bcgsc.ca	37	4	88536614	88536614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	88536614	A	G	88536614	3	3	87	1	0	0	0	0	1	0	0	0	4784	130	5	3	2814	3	DSPP	4	88536614	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	63726398	88536614	102617662	24	5572											
ANAPC10	10393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	145916549	145916549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	145916549	G	T	145916549	3	4	87	1	0	0	0	0	1	0	0	0	599	1281	45	4	27	4	ANAPC10	4	145916549	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	57379935	145916549	45237727	25	5573											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	33658354	33658354	+	Silent	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	33658354	A	G	33658354	2	3	87	1	0	0	0	0	0	0	0	1	257	40	2	3		3	ADAMTS12	5	33658354	Silent	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		33658354	147256906	26	5574											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90281309	90281309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	90281309	C	T	90281309	3	4	87	1	0	0	0	0	1	0	0	0	6728	838	29	2	18460	2	GPR98	5	90281309	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	56622955	90281309	90633951	27	5575											
PHF15	23338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	133895661	133895661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	133895661	C	A	133895661	3	1	87	1	0	0	0	0	1	0	0	0	11833	564	20	4	467	4	PHF15	5	133895661	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	43614352	133895661	47019599	28	5576											
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	135561911	135561911	+	Silent	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	135561911	T	A	135561911	2	1	87	1	0	0	0	0	0	0	0	1	16596	1538	54	5		5	TRPC7	5	135561911	Silent	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	1666250	135561911	45353349	29	5577											
HSPA9	3313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	137903216	137903216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	137903216	T	C	137903216	3	2	87	1	0	0	0	0	1	0	0	0	7424	1493	52	3	1439	3	HSPA9	5	137903216	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	2341305	137903216	43012044	30	5578											
PCDHA2	56146	hgsc.bcm.edu	37	5	140176265	140176265	+	Silent	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	140176265	C	A	140176265	2	1	87	1	0	0	0	0	0	0	0	1	11531	639	23	4		4	PCDHA2	5	140176265	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	2273049	140176265	40738995	31	5579											
DIAPH1	1729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140953451	140953451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	140953451	G	T	140953451	3	4	87	1	0	0	0	0	1	0	0	0	4520	1174	41	4	1904	4	DIAPH1	5	140953451	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	777186	140953451	39961809	32	5580											
PCYOX1L	78991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	148747898	148747898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	148747898	A	T	148747898	3	4	87	1	0	0	0	0	1	0	0	0	11616	188	7	5	1188	5	PCYOX1L	5	148747898	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	7794447	148747898	32167362	33	5581											
RARS	5917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167937680	167937680	+	Nonsense_Mutation	SNP	G	G	T	rs148161788	alternate_allele	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	167937680	G	T	167937680	4	4	87	1	0	0	0	0	0	1	0	0	13071	943	33	4	1487	4	RARS	5	167937680	Nonsense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	19189782	167937680	12977580	34	5582											
DDX41	51428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176943307	176943307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	176943307	G	C	176943307	3	2	87	1	0	0	0	0	1	0	0	0	4363	1000	35	4	1648	4	DDX41	5	176943307	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	9005627	176943307	3971953	35	5583											
DCDC2	51473	hgsc.bcm.edu	37	6	24357769	24357769	+	Silent	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	24357769	A	T	24357769	2	4	87	1	0	0	0	0	0	0	0	1	4287	175	7	5		5	DCDC2	6	24357769	Silent	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		24357769	146757298	36	5584											
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	40399589	40399589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	40399589	G	T	40399589	3	4	87	1	0	0	0	0	1	0	0	0	8945	1232	43	4	1113	4	LRFN2	6	40399589	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	16041820	40399589	130715478	37	5585											
BVES	11149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	105563684	105563684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	105563684	G	A	105563684	3	1	87	1	0	0	0	0	1	0	0	0	1577	1377	48	2	255	2	BVES	6	105563684	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	65164095	105563684	65551383	38	5586											
CITED2	10370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	139694300	139694309	+	Frame_Shift_Del	DEL	CACACGAAGT	CACACGAAGT	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	CACACGAAGT	CACACGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	-	139694309	CACACGAAGT	-	139694300	7	5	87	1	0	1	0	1	0	0	0	0	3442	710	25	0	34	0	CITED2	6	139694300	Frame_Shift_Del	DEL	CACACGAAGT	TCGA-AT-A5NU-01A-11D-A28G-10	34130616	139694300	31420767	39	5587											
ARPC1B	10095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	98988630	98988630	+	Silent	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	98988630	A	G	98988630	2	3	87	1	0	0	0	0	0	0	0	1	970	378	14	3		3	ARPC1B	7	98988630	Silent	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		98988630	60150033	40	5588											
FBXL13	222235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102553614	102553614	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	102553614	G	A	102553614	2	1	87	1	0	0	0	0	0	0	0	1	5716	1281	45	2		2	FBXL13	7	102553614	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	3564984	102553614	56585049	41	5589											
LAMB1	3912	broad.mit.edu;bcgsc.ca	37	7	107599767	107599767	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	107599767	C	G	107599767	3	3	87	1	0	0	0	0	1	0	0	0	8617	768	27	4	2803	4	LAMB1	7	107599767	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	5046153	107599767	51538896	42	5590											
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107605061	107605061	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	107605061	G	C	107605061	3	2	87	1	0	0	0	0	1	0	0	0	8617	1000	35	4	3810	4	LAMB1	7	107605061	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	5294	107605061	51533602	43	5591											
KEL	3792	broad.mit.edu;bcgsc.ca	37	7	142640932	142640932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	142640932	G	T	142640932	3	4	87	1	0	0	0	0	1	0	0	0	8149	962	34	4	692	4	KEL	7	142640932	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	35035871	142640932	16497731	44	5592											
ASAH1	427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	17916973	17916973	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	-	17916973	T	-	17916973	7	5	87	1	0	1	0	1	0	0	0	0	1006	1681	58	0	281	0	ASAH1	8	17916973	Frame_Shift_Del	DEL	T	TCGA-AT-A5NU-01A-11D-A28G-10		17916973	128447049	45	5593											
STMN4	81551	broad.mit.edu	37	8	27097616	27097616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	-	27097616	G	-	27097616	7	5	87	1	0	1	0	1	0	0	0	0	15323	1357	47	0	195	0	STMN4	8	27097616	Frame_Shift_Del	DEL	G	TCGA-AT-A5NU-01A-11D-A28G-10	9180643	27097616	119266406	46	5594											
CRH	1392	hgsc.bcm.edu	37	8	67089641	67089641	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	67089641	C	T	67089641	2	4	87	1	0	0	0	0	0	0	0	1	3871	755	27	1		1	CRH	8	67089641	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	39992025	67089641	79274381	47	5595											
FAM83H	286077	broad.mit.edu	37	8	144808646	144808646	+	Silent	SNP	T	T	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	144808646	T	C	144808646	2	2	87	1	0	0	0	0	0	0	0	1	5647	1722	60	3		3	FAM83H	8	144808646	Silent	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	77719005	144808646	1555376	48	5596											
OPTN	10133	hgsc.bcm.edu;bcgsc.ca	37	10	13160980	13160981	+	Frame_Shift_Ins	INS	-	-	AAGGG	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	AAGGG	13160981	-	AAGGG	13160980	7	5	87	1	0	1	1	0	0	0	0	0	10896	1522	53	0	737	0	OPTN	10	13160980	Frame_Shift_Ins	INS	-	TCGA-AT-A5NU-01A-11D-A28G-10		13160980	122373767	49	5597											
FAM178A	55719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102675796	102675796	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	102675796	C	T	102675796	4	4	87	1	0	0	0	0	0	1	0	0	5507	479	17	2	187	2	FAM178A	10	102675796	Nonsense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	89514816	102675796	32858951	50	5598											
FBXL15	79176	broad.mit.edu	37	10	104182716	104182717	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	104182717	-	G	104182716	7	5	87	1	0	1	1	0	0	0	0	0	5718	768	27	0	883	0	FBXL15	10	104182716	Frame_Shift_Ins	INS	-	TCGA-AT-A5NU-01A-11D-A28G-10	1506920	104182716	31352031	51	5599											
TDRD1	56165	broad.mit.edu;bcgsc.ca	37	10	115964520	115964520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	115964520	G	A	115964520	3	1	87	1	0	0	0	0	1	0	0	0	15742	1000	35	2	1199	2	TDRD1	10	115964520	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	11781804	115964520	19570227	52	5600											
WDR11	55717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	122665493	122665493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	122665493	T	A	122665493	3	1	87	1	0	0	0	0	1	0	0	0	17285	1551	54	5	3503	5	WDR11	10	122665493	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	6700973	122665493	12869254	53	5601											
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	56000572	56000573	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	-	56000573	AA	-	56000572	7	5	87	1	0	1	0	1	0	0	0	0	11189	359	13	0	988	0	OR5T2	11	56000572	Frame_Shift_Del	DEL	AA	TCGA-AT-A5NU-01A-11D-A28G-10		56000572	79005944	54	5602											
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64603951	64603963	+	Frame_Shift_Del	DEL	CCAGCTGGGGGCC	CCAGCTGGGGGCC	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	CCAGCTGGGGGCC	CCAGCTGGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	-	64603963	CCAGCTGGGGGCC	-	64603951	7	5	87	1	0	1	0	1	0	0	0	0	3076	507	18	0	3323	0	CDC42BPG	11	64603951	Frame_Shift_Del	DEL	CCAGCTGGGGGCC	TCGA-AT-A5NU-01A-11D-A28G-10	8603379	64603951	70402565	55	5603											
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67817430	67817430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	67817430	A	G	67817430	3	3	87	1	0	0	0	0	1	0	0	0	15715	318	11	3	2077	3	TCIRG1	11	67817430	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	3213479	67817430	67189086	56	5604											
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	89868775	89868775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	89868775	A	G	89868775	3	3	87	1	0	0	0	0	1	0	0	0	10135	217	8	3	137	3	NAALAD2	11	89868775	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	22051345	89868775	45137741	57	5605											
MFSD5	84975	broad.mit.edu	37	12	53647798	53647798	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	53647798	C	T	53647798	2	4	87	1	0	0	0	0	0	0	0	1	9541	842	30	2		2	MFSD5	12	53647798	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10		53647798	80204097	58	5606											
NT5DC3	51559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104182695	104182695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	104182695	G	C	104182695	3	2	87	1	0	0	0	0	1	0	0	0	10699	1000	35	4	644	4	NT5DC3	12	104182695	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	50534897	104182695	29669200	59	5607											
NKX2-1	7080	hgsc.bcm.edu	37	14	36988288	36988288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	36988288	C	A	36988288	3	1	87	1	0	0	0	0	1	0	0	0	10456	739	26	4	848	4	NKX2-1	14	36988288	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10		36988288	70361252	60	5608											
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	58796735	58796735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	58796735	A	C	58796735	3	2	87	1	0	0	0	0	1	0	0	0	919	72	3	5	792	5	ARID4A	14	58796735	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	21808447	58796735	48552805	61	5609											
TTC8	123016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89338717	89338717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	89338717	C	T	89338717	3	4	87	1	0	0	0	0	1	0	0	0	16726	797	28	2	1318	2	TTC8	14	89338717	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	30541982	89338717	18010823	62	5610											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31342655	31342655	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	31342655	A	T	31342655	3	4	87	1	0	0	0	0	1	0	0	0	16597	159	6	5	3551	5	TRPM1	15	31342655	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		31342655	71188737	63	5611											
AQR	9716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35189882	35189882	+	Silent	SNP	T	T	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	35189882	T	G	35189882	2	3	87	1	0	0	0	0	0	0	0	1	835	1770	62	5		5	AQR	15	35189882	Silent	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	3847227	35189882	67341510	64	5612											
SMAD3	4088	broad.mit.edu	37	15	67473652	67473652	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	67473652	C	T	67473652	2	4	87	1	0	0	0	0	0	0	0	1	14772	871	31	1		1	SMAD3	15	67473652	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	32283770	67473652	35057740	65	5613											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	2059674	T	C	2059674	3	2	87	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10		2059674	88295079	66	5614											
PKD1	5310	ucsc.edu	37	16	2168072	2168072	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	2168072	G	A	2168072	2	1	87	1	0	0	0	0	0	0	0	1	11970	1049	37	1		1	PKD1	16	2168072	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	108398	2168072	88186681	67	5615											
TEKT5	146279	broad.mit.edu	37	16	10788448	10788448	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	-	10788448	C	-	10788448	7	5	87	1	0	1	0	1	0	0	0	0	15768	855	30	0	1202	0	TEKT5	16	10788448	Frame_Shift_Del	DEL	C	TCGA-AT-A5NU-01A-11D-A28G-10	8620376	10788448	79566305	68	5616											
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	64981793	64981793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	64981793	A	G	64981793	3	3	87	1	0	0	0	0	1	0	0	0	3099	391	14	3	290	3	CDH11	16	64981793	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	54193345	64981793	25372960	69	5617											
RLTPR	146206	ucsc.edu;bcgsc.ca	37	16	67690142	67690142	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	67690142	G	C	67690142	3	2	87	1	0	0	0	0	1	0	0	0	13407	1174	41	4	3888	4	RLTPR	16	67690142	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	2708349	67690142	22664611	70	5618											
LCAT	3931	broad.mit.edu	37	16	67976298	67976298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	67976298	C	A	67976298	3	1	87	1	0	0	0	0	1	0	0	0	8665	739	26	4	614	4	LCAT	16	67976298	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	286156	67976298	22378455	71	5619											
SERPINF1	5176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1679947	1679953	+	Frame_Shift_Del	DEL	GAGAACT	GAGAACT	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	GAGAACT	GAGAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	-	1679953	GAGAACT	-	1679947	7	5	87	1	0	1	0	1	0	0	0	0	14127	1058	37	0	930	0	SERPINF1	17	1679947	Frame_Shift_Del	DEL	GAGAACT	TCGA-AT-A5NU-01A-11D-A28G-10		1679947	79515263	72	5620											
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	9501596	9501596	+	Silent	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	9501596	C	A	9501596	2	1	87	1	0	0	0	0	0	0	0	1	17288	903	32	4		4	WDR16	17	9501596	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	7821649	9501596	71693614	73	5621											
TMEM99	147184	broad.mit.edu	37	17	38992526	38992526	+	Splice_Site	SNP	T	T	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	38992526	T	G	38992526	5	3	87	1	0	0	0	0	0	0	1	0	16238	1855	64	5		5	TMEM99	17	38992526	Splice_Site	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	29490930	38992526	42202684	74	5622											
ACE	1636	broad.mit.edu	37	17	61566074	61566074	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	61566074	C	T	61566074	4	4	87	1	0	0	0	0	0	1	0	0	136	760	27	1	2636	1	ACE	17	61566074	Nonsense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	22573548	61566074	19629136	75	5623											
SAP30BP	29115	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73702116	73702116	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	73702116	G	C	73702116	3	2	87	1	0	0	0	0	1	0	0	0	13847	1203	42	4	727	4	SAP30BP	17	73702116	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	12136042	73702116	7493094	76	5624											
MFSD11	79157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74738356	74738356	+	Splice_Site	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	74738356	G	A	74738356	5	1	87	1	0	0	0	0	0	0	1	0	9536	1275	44	2	456	2	MFSD11	17	74738356	Splice_Site	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	1036240	74738356	6456854	77	5625											
CABLES1	91768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	20768825	20768825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	20768825	C	T	20768825	3	4	87	1	0	0	0	0	1	0	0	0	2531	913	32	2	929	2	CABLES1	18	20768825	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10		20768825	57308423	78	5626											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1041554	1041554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	1041554	A	T	1041554	3	4	87	1	0	0	0	0	1	0	0	0	37	217	8	5	118	5	ABCA7	19	1041554	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		1041554	58087429	79	5627											
ADAMTSL5	339366	hgsc.bcm.edu	37	19	1506086	1506086	+	Silent	SNP	G	G	A	rs186786015		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	1506086	G	A	1506086	2	1	87	1	0	0	0	0	0	0	0	1	278	1103	39	1		1	ADAMTSL5	19	1506086	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	464532	1506086	57622897	80	5628											
EVI5L	115704	hgsc.bcm.edu	37	19	7927064	7927064	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	7927064	C	T	7927064	2	4	87	1	0	0	0	0	0	0	0	1	5292	755	27	1		1	EVI5L	19	7927064	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	6420978	7927064	51201919	81	5629											
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31768208	31768208	+	Missense_Mutation	SNP	C	C	T	rs201694059	alternate_allele	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	31768208	C	T	31768208	3	4	87	1	0	0	0	0	1	0	0	0	16637	536	19	1	758	1	TSHZ3	19	31768208	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	23841144	31768208	27360775	82	5630											
ZNF181	339318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35231657	35231657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	35231657	T	C	35231657	3	2	87	1	0	0	0	0	1	0	0	0	17761	1406	49	3	385	3	ZNF181	19	35231657	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	3463449	35231657	23897326	83	5631											
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38850108	38850108	+	Splice_Site	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	38850108	A	T	38850108	5	4	87	1	0	0	0	0	0	0	1	0	2694	202	7	5	1545	5	CATSPERG	19	38850108	Splice_Site	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	3618451	38850108	20278875	84	5632											
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39966780	39966780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	39966780	G	C	39966780	3	2	87	1	0	0	0	0	1	0	0	0	15411	962	34	4	3194	4	SUPT5H	19	39966780	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	1116672	39966780	19162203	85	5633											
PPM1N	147699	broad.mit.edu	37	19	46002036	46002036	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	46002036	C	T	46002036	2	4	87	1	0	0	0	0	0	0	0	1	12356	871	31	1		1	PPM1N	19	46002036	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	6035256	46002036	13126947	86	5634											
CCDC9	26093	hgsc.bcm.edu	37	19	47763935	47763935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	47763935	G	A	47763935	3	1	87	1	0	0	0	0	1	0	0	0	2869	1000	35	2	315	2	CCDC9	19	47763935	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	1761899	47763935	11365048	87	5635											
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205552	48205552	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	48205552	C	T	48205552	2	4	87	1	0	0	0	0	0	0	0	1	6481	668	24	2		2	GLTSCR1	19	48205552	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	441617	48205552	10923431	88	5636											
OLIG1	116448	hgsc.bcm.edu	37	21	34442850	34442850	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	34442850	G	C	34442850	3	2	87	1	0	0	0	0	1	0	0	0	10867	1175	41	4	300	4	OLIG1	21	34442850	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10		34442850	13687045	89	5637											
KRTAP10-1	386677	hgsc.bcm.edu	37	21	45959197	45959197	+	Silent	SNP	G	G	A	rs200623181		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	45959197	G	A	45959197	2	1	87	1	0	0	0	0	0	0	0	1	8512	1190	42	2		2	KRTAP10-1	21	45959197	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	11516347	45959197	2170698	90	5638											
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu	37	21	45978023	45978023	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	45978023	G	A	45978023	2	1	87	1	0	0	0	0	0	0	0	1	8517	987	35	2		2	KRTAP10-3	21	45978023	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	18826	45978023	2151872	91	5639											
SEC14L2	23541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30818390	30818391	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	30818391	-	A	30818390	7	5	87	1	0	1	1	0	0	0	0	0	13995	1045	37	0	1350	0	SEC14L2	22	30818390	Frame_Shift_Ins	INS	-	TCGA-AT-A5NU-01A-11D-A28G-10		30818390	20486176	92	5640											
EIF3L	51386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38273745	38273745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	38273745	G	A	38273745	3	1	87	1	0	0	0	0	1	0	0	0	5024	1145	40	1	1184	1	EIF3L	22	38273745	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	7455355	38273745	13030821	93	5641											
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40283710	40283710	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	C	40283710	A	C	40283710	3	2	87	1	0	0	0	0	1	0	0	0	5139	304	11	5	1804	5	ENTHD1	22	40283710	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	2009965	40283710	11020856	94	5642											
CENPM	79019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42339699	42339699	+	Missense_Mutation	SNP	C	C	T	rs138744954		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	42339699	C	T	42339699	3	4	87	1	0	0	0	0	1	0	0	0	3239	652	23	1	273	1	CENPM	22	42339699	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	2055989	42339699	8964867	95	5643											
MCAT	27349	hgsc.bcm.edu	37	22	43539309	43539309	+	Missense_Mutation	SNP	C	C	A	rs200527554		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	43539309	C	A	43539309	3	1	87	1	0	0	0	0	1	0	0	0	9379	768	27	4	1142	4	MCAT	22	43539309	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	1199610	43539309	7765257	96	5644											
FAM47A	158724	bcgsc.ca	37	X	34148842	34148842	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	A	34148842	G	A	34148842	2	1	87	1	0	0	0	0	0	0	0	1	5576	958	34	2		2	FAM47A	23	34148842	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10		34148842	121121718	97	5645											
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48676773	48676773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	48676773	A	G	48676773	3	3	87	1	0	0	0	0	1	0	0	0	7018	275	10	3	2223	3	HDAC6	23	48676773	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	14527931	48676773	106593787	98	5646											
SERPINA7	6906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	105280775	105280775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	G	105280775	A	G	105280775	3	3	87	1	0	0	0	0	1	0	0	0	14107	101	4	3	988	3	SERPINA7	23	105280775	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	56604002	105280775	49989785	99	5647											
RENBP	5973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153200984	153200985	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	T	153200985	-	T	153200984	7	5	87	1	0	1	1	0	0	0	0	0	13238	922	32	0	168	0	RENBP	23	153200984	Frame_Shift_Ins	INS	-	TCGA-AT-A5NU-01A-11D-A28G-10	47920209	153200984	2069576	100	5648											
GMEB1	10691	hgsc.bcm.edu;ucsc.edu	37	1	29018200	29018200	+	Silent	SNP	A	A	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	29018200	A	T	29018200	2	4	88	1	0	0	0	0	0	0	0	1	6494	233	9	5		5	GMEB1	1	29018200	Silent	SNP	A	TCGA-B0-4690-01A-01D-1361-10		29018200	220232421	1	5649											
SLC44A5	204962	hgsc.bcm.edu	37	1	75805277	75805277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	75805277	C	A	75805277	3	1	88	1	0	0	0	0	1	0	0	0	14652	478	17	4	2263	4	SLC44A5	1	75805277	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	46787077	75805277	173445344	2	5650											
ATXN7L2	127002	hgsc.bcm.edu	37	1	110029637	110029637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	110029637	C	A	110029637	3	1	88	1	0	0	0	0	1	0	0	0	1217	478	17	4	321	4	ATXN7L2	1	110029637	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	34224360	110029637	139220984	3	5651											
ATP6V1B1	525	hgsc.bcm.edu	37	2	71186165	71186165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	71186165	T	C	71186165	3	2	88	1	0	0	0	0	1	0	0	0	1178	1551	54	3	403	3	ATP6V1B1	2	71186165	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10		71186165	172013208	4	5652											
BIN1	274	hgsc.bcm.edu	37	2	127808049	127808049	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	127808049	A	T	127808049	3	4	88	1	0	0	0	0	1	0	0	0	1432	304	11	5	167	5	BIN1	2	127808049	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10	56621884	127808049	115391324	5	5653											
BZW1	9689	hgsc.bcm.edu;ucsc.edu	37	2	201678003	201678003	+	Silent	SNP	A	A	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	201678003	A	G	201678003	2	3	88	1	0	0	0	0	0	0	0	1	1580	318	11	3		3	BZW1	2	201678003	Silent	SNP	A	TCGA-B0-4690-01A-01D-1361-10	73869954	201678003	41521370	6	5654											
SGPP2	130367	hgsc.bcm.edu	37	2	223386613	223386613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	223386613	C	T	223386613	3	4	88	1	0	0	0	0	1	0	0	0	14233	768	27	1	516	1	SGPP2	2	223386613	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	21708610	223386613	19812760	7	5655											
SETD5	55209	hgsc.bcm.edu;ucsc.edu	37	3	9515023	9515023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	9515023	G	T	9515023	3	4	88	1	0	0	0	0	1	0	0	0	14147	1232	43	4	3369	4	SETD5	3	9515023	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10		9515023	188507407	8	5656											
RRP9	9136	hgsc.bcm.edu	37	3	51972151	51972151	+	Silent	SNP	C	C	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	51972151	C	G	51972151	2	3	88	1	0	0	0	0	0	0	0	1	13704	697	25	4		4	RRP9	3	51972151	Silent	SNP	C	TCGA-B0-4690-01A-01D-1361-10	42457128	51972151	146050279	9	5657											
C3orf63	0	hgsc.bcm.edu;ucsc.edu	37	3	56662597	56662597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	56662597	A	G	56662597	3	3	88	1	0	0	0	0	1	0	0	0	2241	43	2	3	1303	3	C3orf63	3	56662597	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10	4690446	56662597	141359833	10	5658											
GPR128	84873	hgsc.bcm.edu	37	3	100349643	100349643	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	100349643	T	A	100349643	3	1	88	1	0	0	0	0	1	0	0	0	6648	1403	49	5	334	5	GPR128	3	100349643	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10	43687046	100349643	97672787	11	5659											
SOX14	8403	hgsc.bcm.edu;ucsc.edu	37	3	137483822	137483822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	137483822	G	A	137483822	3	1	88	1	0	0	0	0	1	0	0	0	14958	1087	38	1	198	1	SOX14	3	137483822	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10	37134179	137483822	60538608	12	5660											
MED12L	116931	hgsc.bcm.edu	37	3	151134118	151134118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	151134118	C	T	151134118	3	4	88	1	0	0	0	0	1	0	0	0	9436	739	26	2	6373	2	MED12L	3	151134118	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	13650296	151134118	46888312	13	5661											
HELQ	113510	hgsc.bcm.edu	37	4	84376821	84376821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	84376821	C	G	84376821	3	3	88	1	0	0	0	0	1	0	0	0	7054	768	27	4	3351	4	HELQ	4	84376821	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10		84376821	106777455	14	5662											
TTC23L	153657	hgsc.bcm.edu	37	5	34867107	34867107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	34867107	A	T	34867107	3	4	88	1	0	0	0	0	1	0	0	0	16703	391	14	5	795	5	TTC23L	5	34867107	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10		34867107	146048153	15	5663											
CENPH	64946	hgsc.bcm.edu	37	5	68505568	68505568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	68505568	A	G	68505568	3	3	88	1	0	0	0	0	1	0	0	0	3234	304	11	3	720	3	CENPH	5	68505568	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10	33638461	68505568	112409692	16	5664											
SPATA9	83890	hgsc.bcm.edu	37	5	94994526	94994526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	94994526	C	A	94994526	3	1	88	1	0	0	0	0	1	0	0	0	15028	478	17	4	202	4	SPATA9	5	94994526	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	26488958	94994526	85920734	17	5665											
ADAMTS19	171019	hgsc.bcm.edu	37	5	128994340	128994340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	128994340	C	T	128994340	3	4	88	1	0	0	0	0	1	0	0	0	264	913	32	2	2375	2	ADAMTS19	5	128994340	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	33999814	128994340	51920920	18	5666											
FBXO38	81545	hgsc.bcm.edu	37	5	147821566	147821566	+	Silent	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	147821566	G	T	147821566	2	4	88	1	0	0	0	0	0	0	0	1	5753	1364	48	4		4	FBXO38	5	147821566	Silent	SNP	G	TCGA-B0-4690-01A-01D-1361-10	18827226	147821566	33093694	19	5667											
DOK3	79930	hgsc.bcm.edu	37	5	176932106	176932107	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	-	176932107	TG	-	176932106	7	5	88	1	0	1	0	1	0	0	0	0	4700	1567	55	0	1308	0	DOK3	5	176932106	Frame_Shift_Del	DEL	TG	TCGA-B0-4690-01A-01D-1361-10	29110540	176932106	3983154	20	5668											
ZNF192	0	hgsc.bcm.edu	37	6	28116327	28116327	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	28116327	G	T	28116327	4	4	88	1	0	0	0	0	0	1	0	0	17768	943	33	4	144	4	ZNF192	6	28116327	Nonsense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10		28116327	142998740	21	5669											
CUL9	23113	hgsc.bcm.edu	37	6	43154085	43154085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	43154085	G	T	43154085	3	4	88	1	0	0	0	0	1	0	0	0	4063	933	33	4	1153	4	CUL9	6	43154085	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10	15037758	43154085	127960982	22	5670											
C6orf138	0	hgsc.bcm.edu	37	6	47846493	47846493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	47846493	T	C	47846493	3	2	88	1	0	0	0	0	1	0	0	0	2334	1551	54	3	457	3	C6orf138	6	47846493	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10	4692408	47846493	123268574	23	5671											
ZNF292	23036	hgsc.bcm.edu	37	6	87970404	87970404	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	87970404	G	T	87970404	4	4	88	1	0	0	0	0	0	1	0	0	17838	943	33	4	7087	4	ZNF292	6	87970404	Nonsense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10	40123911	87970404	83144663	24	5672											
LAMA4	3910	hgsc.bcm.edu	37	6	112455692	112455692	+	Silent	SNP	A	A	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	112455692	A	G	112455692	2	3	88	1	0	0	0	0	0	0	0	1	8615	291	11	3		3	LAMA4	6	112455692	Silent	SNP	A	TCGA-B0-4690-01A-01D-1361-10	24485288	112455692	58659375	25	5673											
C7orf28B	0	hgsc.bcm.edu	37	7	6844681	6844681	+	Missense_Mutation	SNP	C	C	T	rs8058		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	6844681	C	T	6844681	3	4	88	1	0	0	0	0	1	0	0	0	2386	478	17	2	470	2	C7orf28B	7	6844681	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10		6844681	152293982	26	5674											
POR	5447	hgsc.bcm.edu;ucsc.edu	37	7	75615694	75615695	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	75615695	-	T	75615694	7	5	88	1	0	1	1	0	0	0	0	0	12264	912	32	0	1996	0	POR	7	75615694	Frame_Shift_Ins	INS	-	TCGA-B0-4690-01A-01D-1361-10	68771013	75615694	83522969	27	5675											
PRSS37	136242	hgsc.bcm.edu	37	7	141536964	141536964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	141536964	T	G	141536964	3	3	88	1	0	0	0	0	1	0	0	0	12636	1696	59	5	200	5	PRSS37	7	141536964	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10	65921270	141536964	17601699	28	5676											
PSD3	23362	hgsc.bcm.edu	37	8	18662356	18662356	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	18662356	T	G	18662356	3	3	88	1	0	0	0	0	1	0	0	0	12658	1696	59	5	1504	5	PSD3	8	18662356	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10		18662356	127701666	29	5677											
PGCP	0	hgsc.bcm.edu;ucsc.edu	37	8	97892231	97892231	+	Missense_Mutation	SNP	C	C	A	rs149951331	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	97892231	C	A	97892231	3	1	88	1	0	0	0	0	1	0	0	0	11793	479	17	4	857	4	PGCP	8	97892231	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	79229875	97892231	48471791	30	5678											
FAM135B	51059	hgsc.bcm.edu;ucsc.edu	37	8	139180173	139180173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	139180173	A	G	139180173	3	3	88	1	0	0	0	0	1	0	0	0	5453	333	12	3	3033	3	FAM135B	8	139180173	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10	41287942	139180173	7183849	31	5679											
CTSL1	1514	hgsc.bcm.edu	37	9	90344590	90344590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	90344590	G	T	90344590	3	4	88	1	0	0	0	0	1	0	0	0	4040	1377	48	4	742	4	CTSL1	9	90344590	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10		90344590	50868841	32	5680											
C9orf91	203197	hgsc.bcm.edu;ucsc.edu	37	9	117386654	117386654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	117386654	C	T	117386654	3	4	88	1	0	0	0	0	1	0	0	0	2507	565	20	2	137	2	C9orf91	9	117386654	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	27042064	117386654	23826777	33	5681											
TNFSF8	944	hgsc.bcm.edu	37	9	117692493	117692493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	117692493	G	T	117692493	3	4	88	1	0	0	0	0	1	0	0	0	16323	991	35	4	629	4	TNFSF8	9	117692493	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10	305839	117692493	23520938	34	5682											
SFMBT2	57713	hgsc.bcm.edu	37	10	7212905	7212905	+	Silent	SNP	C	C	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	7212905	C	T	7212905	2	4	88	1	0	0	0	0	0	0	0	1	14171	912	32	2		2	SFMBT2	10	7212905	Silent	SNP	C	TCGA-B0-4690-01A-01D-1361-10		7212905	128321842	35	5683											
NSUN6	221078	hgsc.bcm.edu	37	10	18837163	18837163	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	18837163	C	G	18837163	3	3	88	1	0	0	0	0	1	0	0	0	10689	507	18	4	342	4	NSUN6	10	18837163	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	11624258	18837163	116697584	36	5684											
PCDH15	65217	hgsc.bcm.edu	37	10	55582369	55582369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	55582369	C	A	55582369	3	1	88	1	0	0	0	0	1	0	0	0	11518	478	17	4	2360	4	PCDH15	10	55582369	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	36745206	55582369	79952378	37	5685											
DNMBP	23268	hgsc.bcm.edu	37	10	101728908	101728908	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	101728908	T	G	101728908	3	3	88	1	0	0	0	0	1	0	0	0	4676	1696	59	5	4561	5	DNMBP	10	101728908	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10	46146539	101728908	33805839	38	5686											
DHX32	55760	hgsc.bcm.edu;ucsc.edu	37	10	127530464	127530464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	127530464	T	C	127530464	3	2	88	1	0	0	0	0	1	0	0	0	4507	1406	49	3	860	3	DHX32	10	127530464	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10	25801556	127530464	8004283	39	5687											
SNX15	29907	hgsc.bcm.edu	37	11	64799919	64799919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	64799919	G	A	64799919	3	1	88	1	0	0	0	0	1	0	0	0	14899	1116	39	1	162	1	SNX15	11	64799919	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10		64799919	70206597	40	5688											
GDPD4	220032	hgsc.bcm.edu;ucsc.edu	37	11	76969447	76969447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	76969447	C	A	76969447	3	1	88	1	0	0	0	0	1	0	0	0	6333	595	21	4	742	4	GDPD4	11	76969447	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	12169528	76969447	58037069	41	5689											
ALG8	79053	hgsc.bcm.edu	37	11	77850613	77850613	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	77850613	T	G	77850613	3	3	88	1	0	0	0	0	1	0	0	0	523	1696	59	5	1669	5	ALG8	11	77850613	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10	881166	77850613	57155903	42	5690											
ATM	472	ucsc.edu	37	11	108183185	108183185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	T	C	T	T	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	108183185	T	C	108183185	3	2	88	1	0	0	0	0	1	0	0	0	1109	1821	63	3	6120	3	ATM	11	108183185	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10	30332572	108183185	26823331	43	5691											
DSCAML1	57453	hgsc.bcm.edu	37	11	117351250	117351250	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	117351250	A	C	117351250	3	2	88	1	0	0	0	0	1	0	0	0	4771	159	6	5	3548	5	DSCAML1	11	117351250	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10	9168065	117351250	17655266	44	5692											
CACNA1C	775	hgsc.bcm.edu;ucsc.edu	37	12	2702386	2702386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	2702386	G	C	2702386	3	2	88	1	0	0	0	0	1	0	0	0	2542	991	35	4	2720	4	CACNA1C	12	2702386	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10		2702386	131149509	45	5693											
DDX47	51202	hgsc.bcm.edu	37	12	12974952	12974952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	12974952	A	G	12974952	3	3	88	1	0	0	0	0	1	0	0	0	4367	296	11	3	514	3	DDX47	12	12974952	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10	10272566	12974952	120876943	46	5694											
GYS2	2998	hgsc.bcm.edu;ucsc.edu	37	12	21711188	21711188	+	Silent	SNP	G	G	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	21711188	G	A	21711188	2	1	88	1	0	0	0	0	0	0	0	1	6920	1164	41	2		2	GYS2	12	21711188	Silent	SNP	G	TCGA-B0-4690-01A-01D-1361-10	8736236	21711188	112140707	47	5695											
OVCH1	341350	hgsc.bcm.edu	37	12	29597203	29597203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	29597203	G	T	29597203	3	4	88	1	0	0	0	0	1	0	0	0	11330	1368	48	4	532	4	OVCH1	12	29597203	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10	7886015	29597203	104254692	48	5696											
NR2C1	7181	hgsc.bcm.edu	37	12	95445691	95445691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	95445691	G	T	95445691	3	4	88	1	0	0	0	0	1	0	0	0	10629	1377	48	4	1105	4	NR2C1	12	95445691	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10	65848488	95445691	38406204	49	5697											
ALDH2	217	hgsc.bcm.edu	37	12	112228280	112228280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	112228280	G	C	112228280	3	2	88	1	0	0	0	0	1	0	0	0	496	971	34	4	617	4	ALDH2	12	112228280	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10	16782589	112228280	21623615	50	5698											
CCDC62	84660	hgsc.bcm.edu	37	12	123285867	123285867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	123285867	G	T	123285867	3	4	88	1	0	0	0	0	1	0	0	0	2835	1377	48	4	1208	4	CCDC62	12	123285867	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10	11057587	123285867	10566028	51	5699											
GRTP1	79774	hgsc.bcm.edu	37	13	113978880	113978880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	113978880	C	T	113978880	3	4	88	1	0	0	0	0	1	0	0	0	6817	922	32	2	80	2	GRTP1	13	113978880	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10		113978880	1190998	52	5700											
PLIN1	5346	hgsc.bcm.edu	37	15	90212792	90212792	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	90212792	A	T	90212792	3	4	88	1	0	0	0	0	1	0	0	0	12096	217	8	5	874	5	PLIN1	15	90212792	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10		90212792	12318600	53	5701											
AXIN1	8312	hgsc.bcm.edu	37	16	347908	347908	+	Missense_Mutation	SNP	C	C	T	rs146189916		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	347908	C	T	347908	3	4	88	1	0	0	0	0	1	0	0	0	1236	884	31	1	1014	1	AXIN1	16	347908	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10		347908	90006845	54	5702											
APOB48R	0	hgsc.bcm.edu	37	16	28509409	28509409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	28509409	T	C	28509409	3	2	88	1	0	0	0	0	1	0	0	0	786	1551	54	3	2950	3	APOB48R	16	28509409	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10	28161501	28509409	61845344	55	5703											
SALL1	6299	hgsc.bcm.edu	37	16	51174659	51174659	+	Silent	SNP	G	G	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	51174659	G	A	51174659	2	1	88	1	0	0	0	0	0	0	0	1	13823	933	33	2		2	SALL1	16	51174659	Silent	SNP	G	TCGA-B0-4690-01A-01D-1361-10	22665250	51174659	39180094	56	5704											
GINS3	64785	hgsc.bcm.edu	37	16	58437164	58437165	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	-	58437165	TA	-	58437164	7	5	88	1	0	1	0	1	0	0	0	0	6396	1522	53	0	476	0	GINS3	16	58437164	Frame_Shift_Del	DEL	TA	TCGA-B0-4690-01A-01D-1361-10	7262505	58437164	31917589	57	5705											
ABCA9	10350	hgsc.bcm.edu;ucsc.edu	37	17	67039701	67039701	+	Silent	SNP	G	G	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	67039701	G	C	67039701	2	2	88	1	0	0	0	0	0	0	0	1	39	1277	45	4		4	ABCA9	17	67039701	Silent	SNP	G	TCGA-B0-4690-01A-01D-1361-10		67039701	14155509	58	5706											
LAMA1	284217	hgsc.bcm.edu	37	18	7023198	7023198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	7023198	A	C	7023198	3	2	88	1	0	0	0	0	1	0	0	0	8612	246	9	5	6741	5	LAMA1	18	7023198	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10		7023198	71054050	59	5707											
TWSG1	57045	hgsc.bcm.edu	37	18	9399343	9399343	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	9399343	G	A	9399343	5	1	88	1	0	0	0	0	0	0	1	0	16797	956	33	2	504	2	TWSG1	18	9399343	Splice_Site	SNP	G	TCGA-B0-4690-01A-01D-1361-10	2376145	9399343	68677905	60	5708											
NFIX	4784	hgsc.bcm.edu	37	19	13189496	13189496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	13189496	C	T	13189496	3	4	88	1	0	0	0	0	1	0	0	0	10381	652	23	1	1051	1	NFIX	19	13189496	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10		13189496	45939487	61	5709											
ZNF780B	163131	hgsc.bcm.edu	37	19	40542428	40542428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	40542428	A	G	40542428	3	3	88	1	0	0	0	0	1	0	0	0	18165	304	11	3	2167	3	ZNF780B	19	40542428	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10	27352932	40542428	18586555	62	5710											
C20orf7	0	hgsc.bcm.edu	37	20	13797851	13797851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	13797851	C	A	13797851	3	1	88	1	0	0	0	0	1	0	0	0	2117	479	17	4	1095	4	C20orf7	20	13797851	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10		13797851	49227669	63	5711											
RBBP9	10741	hgsc.bcm.edu	37	20	18477770	18477770	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	-	18477770	T	-	18477770	7	5	88	1	0	1	0	1	0	0	0	0	13119	1538	54	0	538	0	RBBP9	20	18477770	Frame_Shift_Del	DEL	T	TCGA-B0-4690-01A-01D-1361-10	4679919	18477770	44547750	64	5712											
CEP250	11190	hgsc.bcm.edu;ucsc.edu	37	20	34050332	34050332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	34050332	A	G	34050332	3	3	88	1	0	0	0	0	1	0	0	0	3254	304	11	3	142	3	CEP250	20	34050332	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10	15572562	34050332	28975188	65	5713											
ZNF831	128611	hgsc.bcm.edu	37	20	57782030	57782030	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	57782030	C	G	57782030	3	3	88	1	0	0	0	0	1	0	0	0	18197	760	27	4	3956	4	ZNF831	20	57782030	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	23731698	57782030	5243490	66	5714											
BCL2L13	23786	hgsc.bcm.edu	37	22	18210157	18210157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	A	18210157	G	A	18210157	3	1	88	1	0	0	0	0	1	0	0	0	1371	1232	43	2	1337	2	BCL2L13	22	18210157	Missense_Mutation	SNP	G	TCGA-B0-4690-01A-01D-1361-10		18210157	33094409	67	5715											
SRRD	402055	hgsc.bcm.edu	37	22	26886035	26886035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	26886035	A	C	26886035	3	2	88	1	0	0	0	0	1	0	0	0	15179	304	11	5	653	5	SRRD	22	26886035	Missense_Mutation	SNP	A	TCGA-B0-4690-01A-01D-1361-10	8675878	26886035	24418531	68	5716											
MN1	4330	hgsc.bcm.edu	37	22	28146982	28146982	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	G	28146982	C	G	28146982	3	3	88	1	0	0	0	0	1	0	0	0	9680	884	31	4	82	4	MN1	22	28146982	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10	1260947	28146982	23157584	69	5717											
SEPT3	55964	hgsc.bcm.edu	37	22	42388735	42388735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	C	42388735	T	C	42388735	3	2	88	1	0	0	0	0	1	0	0	0	14078	1551	54	3	863	3	SEPT3	22	42388735	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01D-1361-10	14241753	42388735	8915831	70	5718											
ZCCHC12	170261	hgsc.bcm.edu	37	X	117959578	117959578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4690-01A-01D-1361-10	TCGA-B0-4690-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c850b39-135b-40e7-a23f-89b210cf8c0c	4478e8fc-6432-477e-8de5-3f15d3e0ad44	T	117959578	C	T	117959578	3	4	88	1	0	0	0	0	1	0	0	0	17593	913	32	2	373	2	ZCCHC12	23	117959578	Missense_Mutation	SNP	C	TCGA-B0-4690-01A-01D-1361-10		117959578	37310982	71	5719											
VHL	7428	hgsc.bcm.edu	37	3	10183857	10183857	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4690-01A-01W-1359-10	TCGA-B0-4690-11A-01W-1359-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	3d37e399-27f4-4e5c-ad28-263eeafa5f07	d61e871d-a7b0-4dd2-9e71-19b3bb6033e9	A	10183857	T	A	10183857	3	1	89	1	0	0	0	0	1	0	0	0	17174	1435	50	5	328	5	VHL	3	10183857	Missense_Mutation	SNP	T	TCGA-B0-4690-01A-01W-1359-10		10183857	187838573	1	5720											
GNL2	29889	hgsc.bcm.edu	37	1	38056444	38056444	+	Missense_Mutation	SNP	T	T	G	rs112315084		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	38056444	T	G	38056444	3	3	90	1	0	0	0	0	1	0	0	0	6543	1841	64	5	2000	5	GNL2	1	38056444	Missense_Mutation	SNP	T	TCGA-B0-4691-01A-01D-1361-10		38056444	211194177	1	5721											
ZNF642	0	hgsc.bcm.edu	37	1	40945114	40945114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	40945114	G	T	40945114	3	4	90	1	0	0	0	0	1	0	0	0	18070	991	35	4	83	4	ZNF642	1	40945114	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	2888670	40945114	208305507	2	5722											
KANK4	163782	hgsc.bcm.edu	37	1	62740019	62740019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	62740019	A	G	62740019	3	3	90	1	0	0	0	0	1	0	0	0	7986	304	11	3	2262	3	KANK4	1	62740019	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	21794905	62740019	186510602	3	5723											
BCL10	8915	hgsc.bcm.edu	37	1	85736490	85736490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	85736490	C	G	85736490	3	3	90	1	0	0	0	0	1	0	0	0	1362	835	29	4	552	4	BCL10	1	85736490	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	22996471	85736490	163514131	4	5724											
NTNG1	22854	hgsc.bcm.edu	37	1	107867021	107867021	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	107867021	A	T	107867021	3	4	90	1	0	0	0	0	1	0	0	0	10711	159	6	5	370	5	NTNG1	1	107867021	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	22130531	107867021	141383600	5	5725											
NOTCH2	4853	hgsc.bcm.edu;ucsc.edu	37	1	120539837	120539837	+	Silent	SNP	T	T	C	rs1616532	bycluster;byfrequency	TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	120539837	T	C	120539837	2	2	90	1	0	0	0	0	0	0	0	1	10555	1490	52	3		3	NOTCH2	1	120539837	Silent	SNP	T	TCGA-B0-4691-01A-01D-1361-10	12672816	120539837	128710784	6	5726											
ITGA10	8515	hgsc.bcm.edu	37	1	145532550	145532550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	145532550	T	C	145532550	3	2	90	1	0	0	0	0	1	0	0	0	7880	1841	64	3	1037	3	ITGA10	1	145532550	Missense_Mutation	SNP	T	TCGA-B0-4691-01A-01D-1361-10	24992713	145532550	103718071	7	5727											
TDRD10	126668	hgsc.bcm.edu;ucsc.edu	37	1	154517301	154517301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	154517301	G	T	154517301	3	4	90	1	0	0	0	0	1	0	0	0	15743	1241	43	4	866	4	TDRD10	1	154517301	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	8984751	154517301	94733320	8	5728											
IL24	11009	hgsc.bcm.edu;ucsc.edu	37	1	207072689	207072689	+	Silent	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	207072689	G	A	207072689	2	1	90	1	0	0	0	0	0	0	0	1	7684	1045	37	1		1	IL24	1	207072689	Silent	SNP	G	TCGA-B0-4691-01A-01D-1361-10	52555388	207072689	42177932	9	5729											
EPHX1	2052	hgsc.bcm.edu	37	1	226027044	226027044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	226027044	C	A	226027044	3	1	90	1	0	0	0	0	1	0	0	0	5181	623	22	4	733	4	EPHX1	1	226027044	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	18954355	226027044	23223577	10	5730											
GPR113	165082	hgsc.bcm.edu	37	2	26540932	26540932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	26540932	C	T	26540932	3	4	90	1	0	0	0	0	1	0	0	0	6637	623	22	2	3138	2	GPR113	2	26540932	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10		26540932	216658441	11	5731											
WDR43	23160	hgsc.bcm.edu	37	2	29164351	29164351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	29164351	G	T	29164351	3	4	90	1	0	0	0	0	1	0	0	0	17307	1232	43	4	1703	4	WDR43	2	29164351	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	2623419	29164351	214035022	12	5732											
XPO1	7514	hgsc.bcm.edu	37	2	61717806	61717806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	61717806	A	G	61717806	3	3	90	1	0	0	0	0	1	0	0	0	17457	159	6	3	1258	3	XPO1	2	61717806	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	32553455	61717806	181481567	13	5733											
DUSP11	8446	hgsc.bcm.edu	37	2	74001019	74001019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	74001019	A	G	74001019	3	3	90	1	0	0	0	0	1	0	0	0	4813	101	4	3	675	3	DUSP11	2	74001019	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	12283213	74001019	169198354	14	5734											
ZC3H6	376940	hgsc.bcm.edu	37	2	113089834	113089834	+	Silent	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	113089834	A	G	113089834	2	3	90	1	0	0	0	0	0	0	0	1	17583	146	6	3		3	ZC3H6	2	113089834	Silent	SNP	A	TCGA-B0-4691-01A-01D-1361-10	39088815	113089834	130109539	15	5735											
PSD4	23550	hgsc.bcm.edu	37	2	113942954	113942954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	113942954	C	T	113942954	3	4	90	1	0	0	0	0	1	0	0	0	12659	623	22	2	1196	2	PSD4	2	113942954	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	853120	113942954	129256419	16	5736											
SP3	6670	hgsc.bcm.edu	37	2	174819867	174819867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	174819867	G	A	174819867	3	1	90	1	0	0	0	0	1	0	0	0	14978	942	33	2	988	2	SP3	2	174819867	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	60876913	174819867	68379506	17	5737											
NAB1	4664	hgsc.bcm.edu	37	2	191524675	191524675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	191524675	G	T	191524675	3	4	90	1	0	0	0	0	1	0	0	0	10138	942	33	4	775	4	NAB1	2	191524675	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	16704808	191524675	51674698	18	5738											
MARS2	92935	hgsc.bcm.edu	37	2	198571043	198571043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	198571043	C	A	198571043	3	1	90	1	0	0	0	0	1	0	0	0	9324	913	32	4	916	4	MARS2	2	198571043	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	7046368	198571043	44628330	19	5739											
ALS2	57679	hgsc.bcm.edu	37	2	202593234	202593234	+	Splice_Site	SNP	C	C	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	202593234	C	G	202593234	5	3	90	1	0	0	0	0	0	0	1	0	550	521	18	4	2211	4	ALS2	2	202593234	Splice_Site	SNP	C	TCGA-B0-4691-01A-01D-1361-10	4022191	202593234	40606139	20	5740											
ZDBF2	57683	hgsc.bcm.edu	37	2	207170632	207170632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	207170632	G	T	207170632	3	4	90	1	0	0	0	0	1	0	0	0	17611	1339	47	4	1390	4	ZDBF2	2	207170632	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	4577398	207170632	36028741	21	5741											
ANO7	50636	hgsc.bcm.edu	37	2	242154264	242154264	+	Silent	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	242154264	G	A	242154264	2	1	90	1	0	0	0	0	0	0	0	1	702	1335	47	2		2	ANO7	2	242154264	Silent	SNP	G	TCGA-B0-4691-01A-01D-1361-10	34983632	242154264	1045109	22	5742											
TMEM111	0	hgsc.bcm.edu	37	3	10011439	10011439	+	Silent	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	10011439	G	A	10011439	2	1	90	1	0	0	0	0	0	0	0	1	16040	1335	47	2		2	TMEM111	3	10011439	Silent	SNP	G	TCGA-B0-4691-01A-01D-1361-10		10011439	188010991	23	5743											
HDAC11	79885	hgsc.bcm.edu;ucsc.edu	37	3	13522780	13522780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	13522780	G	C	13522780	3	2	90	1	0	0	0	0	1	0	0	0	7013	943	33	4	43	4	HDAC11	3	13522780	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	3511341	13522780	184499650	24	5744											
RNF123	63891	hgsc.bcm.edu	37	3	49737755	49737755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	49737755	G	T	49737755	3	4	90	1	0	0	0	0	1	0	0	0	13446	991	35	4	1126	4	RNF123	3	49737755	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	36214975	49737755	148284675	25	5745											
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52441470	52441470	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	52441470	C	A	52441470	4	1	90	1	0	0	0	0	0	1	0	0	1311	690	24	4	1855	4	BAP1	3	52441470	Nonsense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	2703715	52441470	145580960	26	5746											
CHDH	55349	hgsc.bcm.edu;ucsc.edu	37	3	53853013	53853013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	53853013	C	T	53853013	3	4	90	1	0	0	0	0	1	0	0	0	3335	710	25	2	474	2	CHDH	3	53853013	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	1411543	53853013	144169417	27	5747											
FLNB	2317	hgsc.bcm.edu	37	3	58088038	58088038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	58088038	G	T	58088038	3	4	90	1	0	0	0	0	1	0	0	0	5941	1232	43	4	1488	4	FLNB	3	58088038	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	4235025	58088038	139934392	28	5748											
RG9MTD1	0	hgsc.bcm.edu	37	3	101284157	101284157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	101284157	C	A	101284157	3	1	90	1	0	0	0	0	1	0	0	0	13284	912	32	4	534	4	RG9MTD1	3	101284157	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	43196119	101284157	96738273	29	5749											
ARHGAP31	57514	hgsc.bcm.edu	37	3	119134491	119134491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	119134491	A	G	119134491	3	3	90	1	0	0	0	0	1	0	0	0	880	43	2	3	3761	3	ARHGAP31	3	119134491	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	17850334	119134491	78887939	30	5750											
CLSTN2	64084	hgsc.bcm.edu	37	3	140281788	140281788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	140281788	T	C	140281788	3	2	90	1	0	0	0	0	1	0	0	0	3564	1783	62	3	2402	3	CLSTN2	3	140281788	Missense_Mutation	SNP	T	TCGA-B0-4691-01A-01D-1361-10	21147297	140281788	57740642	31	5751											
TBC1D1	23216	hgsc.bcm.edu	37	4	38016542	38016542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	38016542	A	G	38016542	3	3	90	1	0	0	0	0	1	0	0	0	15609	159	6	3	836	3	TBC1D1	4	38016542	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10		38016542	153137734	32	5752											
EXOC1	55763	hgsc.bcm.edu	37	4	56738088	56738088	+	Silent	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	56738088	A	G	56738088	2	3	90	1	0	0	0	0	0	0	0	1	5303	272	10	3		3	EXOC1	4	56738088	Silent	SNP	A	TCGA-B0-4691-01A-01D-1361-10	18721546	56738088	134416188	33	5753											
LPHN3	23284	hgsc.bcm.edu;ucsc.edu	37	4	62935947	62935947	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	62935947	T	A	62935947	3	1	90	1	0	0	0	0	1	0	0	0	8924	1406	49	5	3821	5	LPHN3	4	62935947	Missense_Mutation	SNP	T	TCGA-B0-4691-01A-01D-1361-10	6197859	62935947	128218329	34	5754											
SYNPO2	171024	hgsc.bcm.edu;ucsc.edu	37	4	119978853	119978853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	119978853	C	T	119978853	3	4	90	1	0	0	0	0	1	0	0	0	15469	855	30	2	3680	2	SYNPO2	4	119978853	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	57042906	119978853	71175423	35	5755											
CCDC110	256309	hgsc.bcm.edu	37	4	186380243	186380243	+	Missense_Mutation	SNP	A	A	C	rs59319722	bycluster;byfrequency;by1000genomes	TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	186380243	A	C	186380243	3	2	90	1	0	0	0	0	1	0	0	0	2749	449	16	5	1011	5	CCDC110	4	186380243	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	66401390	186380243	4774033	36	5756											
GPR98	84059	hgsc.bcm.edu;ucsc.edu	37	5	90144583	90144583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	90144583	G	A	90144583	3	1	90	1	0	0	0	0	1	0	0	0	6728	1291	45	2	17463	2	GPR98	5	90144583	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10		90144583	90770677	37	5757											
RAD50	10111	hgsc.bcm.edu;ucsc.edu	37	5	131973813	131973813	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	131973813	T	G	131973813	3	3	90	1	0	0	0	0	1	0	0	0	12997	1461	51	5	3606	5	RAD50	5	131973813	Missense_Mutation	SNP	T	TCGA-B0-4691-01A-01D-1361-10	41829230	131973813	48941447	38	5758											
FLT4	2324	hgsc.bcm.edu;ucsc.edu	37	5	180057623	180057623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	180057623	C	T	180057623	3	4	90	1	0	0	0	0	1	0	0	0	5951	710	25	2	3879	2	FLT4	5	180057623	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	48083810	180057623	857637	39	5759											
HSPA1L	3305	hgsc.bcm.edu	37	6	31778695	31778695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	31778695	A	G	31778695	3	3	90	1	0	0	0	0	1	0	0	0	7417	72	3	3	874	3	HSPA1L	6	31778695	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10		31778695	139336372	40	5760											
LRRC1	55227	hgsc.bcm.edu	37	6	53787551	53787551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	53787551	A	G	53787551	3	3	90	1	0	0	0	0	1	0	0	0	8973	304	11	3	1589	3	LRRC1	6	53787551	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	22008856	53787551	117327516	41	5761											
ZNF292	23036	hgsc.bcm.edu	37	6	87970404	87970404	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	87970404	G	T	87970404	4	4	90	1	0	0	0	0	0	1	0	0	17838	943	33	4	7087	4	ZNF292	6	87970404	Nonsense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	34182853	87970404	83144663	42	5762											
USP45	85015	hgsc.bcm.edu	37	6	99924089	99924089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	99924089	T	C	99924089	3	2	90	1	0	0	0	0	1	0	0	0	17088	1435	50	3	1621	3	USP45	6	99924089	Missense_Mutation	SNP	T	TCGA-B0-4691-01A-01D-1361-10	11953685	99924089	71190978	43	5763											
CTTNBP2	83992	hgsc.bcm.edu	37	7	117431331	117431331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	117431331	G	T	117431331	3	4	90	1	0	0	0	0	1	0	0	0	4047	1000	35	4	3152	4	CTTNBP2	7	117431331	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10		117431331	41707332	44	5764											
TRPV6	55503	hgsc.bcm.edu	37	7	142571254	142571254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	142571254	C	A	142571254	3	1	90	1	0	0	0	0	1	0	0	0	16612	623	22	4	454	4	TRPV6	7	142571254	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	25139923	142571254	16567409	45	5765											
PIP	5304	hgsc.bcm.edu	37	7	142832380	142832380	+	Silent	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	142832380	A	G	142832380	2	3	90	1	0	0	0	0	0	0	0	1	11942	69	3	3		3	PIP	7	142832380	Silent	SNP	A	TCGA-B0-4691-01A-01D-1361-10	261126	142832380	16306283	46	5766											
EZH2	2146	hgsc.bcm.edu	37	7	148512045	148512045	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	148512045	G	A	148512045	4	1	90	1	0	0	0	0	0	1	0	0	5336	1386	48	2	650	2	EZH2	7	148512045	Nonsense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	5679665	148512045	10626618	47	5767											
ZNF777	27153	hgsc.bcm.edu;ucsc.edu	37	7	149133877	149133877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	149133877	G	T	149133877	3	4	90	1	0	0	0	0	1	0	0	0	18162	1136	40	4	1375	4	ZNF777	7	149133877	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	621832	149133877	10004786	48	5768											
PRKAG2	51422	hgsc.bcm.edu;ucsc.edu	37	7	151483611	151483611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	151483611	G	A	151483611	3	1	90	1	0	0	0	0	1	0	0	0	12511	1203	42	2	1638	2	PRKAG2	7	151483611	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	2349734	151483611	7655052	49	5769											
CSMD1	64478	hgsc.bcm.edu	37	8	3265502	3265502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	3265502	C	A	3265502	3	1	90	1	0	0	0	0	1	0	0	0	3946	739	26	4	8932	4	CSMD1	8	3265502	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10		3265502	143098520	50	5770											
RLN1	6013	hgsc.bcm.edu	37	9	5339628	5339629	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	-	5339629	AC	-	5339628	7	5	90	1	0	1	0	1	0	0	0	0	13404	43	2	0	446	0	RLN1	9	5339628	Frame_Shift_Del	DEL	AC	TCGA-B0-4691-01A-01D-1361-10		5339628	135873803	51	5771											
RALGDS	5900	hgsc.bcm.edu	37	9	135985694	135985694	+	Silent	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	135985694	C	A	135985694	2	1	90	1	0	0	0	0	0	0	0	1	13029	697	25	4		4	RALGDS	9	135985694	Silent	SNP	C	TCGA-B0-4691-01A-01D-1361-10	130646066	135985694	5227737	52	5772											
PITRM1	10531	hgsc.bcm.edu;ucsc.edu	37	10	3200259	3200259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	3200259	A	G	3200259	3	3	90	1	0	0	0	0	1	0	0	0	11960	449	16	3	1958	3	PITRM1	10	3200259	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10		3200259	132334488	53	5773											
HSPA14	51182	hgsc.bcm.edu;ucsc.edu	37	10	14893312	14893312	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	14893312	A	T	14893312	3	4	90	1	0	0	0	0	1	0	0	0	7414	391	14	5	588	5	HSPA14	10	14893312	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	11693053	14893312	120641435	54	5774											
P4HA1	5033	hgsc.bcm.edu;ucsc.edu	37	10	74806681	74806681	+	Splice_Site	SNP	A	A	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	74806681	A	C	74806681	5	2	90	1	0	0	0	0	0	0	1	0	11363	405	14	5	632	5	P4HA1	10	74806681	Splice_Site	SNP	A	TCGA-B0-4691-01A-01D-1361-10	59913369	74806681	60728066	55	5775											
MMS19	64210	hgsc.bcm.edu	37	10	99220744	99220744	+	Silent	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	99220744	G	A	99220744	2	1	90	1	0	0	0	0	0	0	0	1	9679	991	35	2		2	MMS19	10	99220744	Silent	SNP	G	TCGA-B0-4691-01A-01D-1361-10	24414063	99220744	36314003	56	5776											
MKI67	4288	hgsc.bcm.edu	37	10	129903530	129903530	+	Missense_Mutation	SNP	C	C	T	rs139058203	alternate_allele	TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	129903530	C	T	129903530	3	4	90	1	0	0	0	0	1	0	0	0	9605	922	32	2	3208	2	MKI67	10	129903530	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	30682786	129903530	5631217	57	5777											
COPB1	1315	hgsc.bcm.edu;ucsc.edu	37	11	14510041	14510041	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	14510041	A	C	14510041	4	2	90	1	0	0	0	0	0	1	0	0	3730	456	16	5	2233	5	COPB1	11	14510041	Nonsense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10		14510041	120496475	58	5778											
GTF2H1	2965	hgsc.bcm.edu	37	11	18359819	18359819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	18359819	C	A	18359819	3	1	90	1	0	0	0	0	1	0	0	0	6867	912	32	4	521	4	GTF2H1	11	18359819	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	3849778	18359819	116646697	59	5779											
DYNC2H1	79659	hgsc.bcm.edu	37	11	103025274	103025274	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	103025274	T	G	103025274	3	3	90	1	0	0	0	0	1	0	0	0	4848	1609	56	5	3487	5	DYNC2H1	11	103025274	Missense_Mutation	SNP	T	TCGA-B0-4691-01A-01D-1361-10	84665455	103025274	31981242	60	5780											
SORL1	6653	hgsc.bcm.edu;ucsc.edu	37	11	121498365	121498365	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	121498365	G	C	121498365	3	2	90	1	0	0	0	0	1	0	0	0	14947	1319	46	4	6652	4	SORL1	11	121498365	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	18473091	121498365	13508151	61	5781											
GRAMD1B	57476	hgsc.bcm.edu	37	11	123477468	123477468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	123477468	C	A	123477468	3	1	90	1	0	0	0	0	1	0	0	0	6755	623	22	4	1084	4	GRAMD1B	11	123477468	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	1979103	123477468	11529048	62	5782											
OR10G7	390265	hgsc.bcm.edu	37	11	123909172	123909172	+	Silent	SNP	G	G	A	rs78239494		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	123909172	G	A	123909172	2	1	90	1	0	0	0	0	0	0	0	1	10909	1136	40	1		1	OR10G7	11	123909172	Silent	SNP	G	TCGA-B0-4691-01A-01D-1361-10	431704	123909172	11097344	63	5783											
PLEKHA5	54477	hgsc.bcm.edu	37	12	19440437	19440437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	19440437	C	A	19440437	3	1	90	1	0	0	0	0	1	0	0	0	12066	739	26	4	1838	4	PLEKHA5	12	19440437	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10		19440437	114411458	64	5784											
FAM113B	0	hgsc.bcm.edu	37	12	47630058	47630058	+	Silent	SNP	T	T	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	47630058	T	A	47630058	2	1	90	1	0	0	0	0	0	0	0	1	5406	1654	58	5		5	FAM113B	12	47630058	Silent	SNP	T	TCGA-B0-4691-01A-01D-1361-10	28189621	47630058	86221837	65	5785											
ITGB7	3695	hgsc.bcm.edu	37	12	53586257	53586257	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	53586257	G	C	53586257	3	2	90	1	0	0	0	0	1	0	0	0	7907	1203	42	4	396	4	ITGB7	12	53586257	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	5956199	53586257	80265638	66	5786											
LRRIQ1	84125	hgsc.bcm.edu;ucsc.edu	37	12	85439805	85439805	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	85439805	C	G	85439805	3	3	90	1	0	0	0	0	1	0	0	0	9036	913	32	4	358	4	LRRIQ1	12	85439805	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	31853548	85439805	48412090	67	5787											
P2RX2	22953	hgsc.bcm.edu	37	12	133198303	133198303	+	Silent	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	133198303	C	A	133198303	2	1	90	1	0	0	0	0	0	0	0	1	11347	668	24	4		4	P2RX2	12	133198303	Silent	SNP	C	TCGA-B0-4691-01A-01D-1361-10	47758498	133198303	653592	68	5788											
C1QTNF9	338872	hgsc.bcm.edu	37	13	24895240	24895240	+	Silent	SNP	G	G	A	rs3751354	bycluster;byfrequency	TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	24895240	G	A	24895240	2	1	90	1	0	0	0	0	0	0	0	1	1972	991	35	2		2	C1QTNF9	13	24895240	Silent	SNP	G	TCGA-B0-4691-01A-01D-1361-10		24895240	90274638	69	5789											
FRY	10129	hgsc.bcm.edu	37	13	32836597	32836597	+	Silent	SNP	T	T	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	32836597	T	C	32836597	2	2	90	1	0	0	0	0	0	0	0	1	6070	1829	64	3		3	FRY	13	32836597	Silent	SNP	T	TCGA-B0-4691-01A-01D-1361-10	7941357	32836597	82333281	70	5790											
KIAA0564	0	hgsc.bcm.edu	37	13	42460952	42460952	+	Silent	SNP	C	C	T	rs138269345	by1000genomes;alternate_allele	TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	42460952	C	T	42460952	2	4	90	1	0	0	0	0	0	0	0	1	8192	477	17	2		2	KIAA0564	13	42460952	Silent	SNP	C	TCGA-B0-4691-01A-01D-1361-10	9624355	42460952	72708926	71	5791											
MYCBP2	23077	hgsc.bcm.edu;ucsc.edu	37	13	77669615	77669615	+	Silent	SNP	T	T	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	77669615	T	C	77669615	2	2	90	1	0	0	0	0	0	0	0	1	10025	1722	60	3		3	MYCBP2	13	77669615	Silent	SNP	T	TCGA-B0-4691-01A-01D-1361-10	35208663	77669615	37500263	72	5792											
COL4A2	1284	hgsc.bcm.edu	37	13	111156500	111156500	+	Missense_Mutation	SNP	C	C	T	rs139124960		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	111156500	C	T	111156500	3	4	90	1	0	0	0	0	1	0	0	0	3692	652	23	1	4465	1	COL4A2	13	111156500	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	33486885	111156500	4013378	73	5793											
DHRS4L1	728635	hgsc.bcm.edu	37	14	24513063	24513063	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	24513063	A	C	24513063	3	2	90	1	0	0	0	0	1	0	0	0	4495	246	9	5	418	5	DHRS4L1	14	24513063	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10		24513063	82836477	74	5794											
PNN	5411	hgsc.bcm.edu	37	14	39650383	39650383	+	Silent	SNP	C	C	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	39650383	C	T	39650383	2	4	90	1	0	0	0	0	0	0	0	1	12167	610	22	2		2	PNN	14	39650383	Silent	SNP	C	TCGA-B0-4691-01A-01D-1361-10	15137320	39650383	67699157	75	5795											
CDAN1	146059	hgsc.bcm.edu	37	15	43017754	43017754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	43017754	G	A	43017754	3	1	90	1	0	0	0	0	1	0	0	0	3056	1116	39	1	312	1	CDAN1	15	43017754	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10		43017754	59513638	76	5796											
ONECUT1	3175	hgsc.bcm.edu	37	15	53049880	53049880	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	53049880	A	T	53049880	3	4	90	1	0	0	0	0	1	0	0	0	10875	40	2	5	131	5	ONECUT1	15	53049880	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	10032126	53049880	49481512	77	5797											
HERC1	8925	hgsc.bcm.edu	37	15	63932415	63932415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	63932415	A	G	63932415	3	3	90	1	0	0	0	0	1	0	0	0	7064	14	1	3	2820	3	HERC1	15	63932415	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	10882535	63932415	38598977	78	5798											
SLC28A1	9154	hgsc.bcm.edu	37	15	85451987	85451987	+	Silent	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	85451987	G	T	85451987	2	4	90	1	0	0	0	0	0	0	0	1	14544	1364	48	4		4	SLC28A1	15	85451987	Silent	SNP	G	TCGA-B0-4691-01A-01D-1361-10	21519572	85451987	17079405	79	5799											
CHD2	1106	hgsc.bcm.edu;ucsc.edu	37	15	93567834	93567834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	93567834	C	A	93567834	3	1	90	1	0	0	0	0	1	0	0	0	3327	855	30	4	5540	4	CHD2	15	93567834	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	8115847	93567834	8963558	80	5800											
LRRK1	79705	hgsc.bcm.edu	37	15	101595284	101595284	+	Silent	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	101595284	C	A	101595284	2	1	90	1	0	0	0	0	0	0	0	1	9039	610	22	4		4	LRRK1	15	101595284	Silent	SNP	C	TCGA-B0-4691-01A-01D-1361-10	8027450	101595284	936108	81	5801											
PHKB	5257	hgsc.bcm.edu;ucsc.edu	37	16	47622841	47622841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	47622841	G	A	47622841	3	1	90	1	0	0	0	0	1	0	0	0	11852	1319	46	2	993	2	PHKB	16	47622841	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10		47622841	42731912	82	5802											
SCARF1	8578	hgsc.bcm.edu	37	17	1538815	1538815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	1538815	G	A	1538815	3	1	90	1	0	0	0	0	1	0	0	0	13896	1116	39	1	766	1	SCARF1	17	1538815	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10		1538815	79656395	83	5803											
PNMT	5409	hgsc.bcm.edu	37	17	37826360	37826360	+	Silent	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	37826360	A	G	37826360	2	3	90	1	0	0	0	0	0	0	0	1	12166	175	7	3		3	PNMT	17	37826360	Silent	SNP	A	TCGA-B0-4691-01A-01D-1361-10	36287545	37826360	43368850	84	5804											
TNS4	84951	hgsc.bcm.edu;ucsc.edu	37	17	38643651	38643651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	38643651	T	A	38643651	3	1	90	1	0	0	0	0	1	0	0	0	16357	1609	56	5	1262	5	TNS4	17	38643651	Missense_Mutation	SNP	T	TCGA-B0-4691-01A-01D-1361-10	817291	38643651	42551559	85	5805											
PSME3	10197	hgsc.bcm.edu	37	17	40990734	40990734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	40990734	G	A	40990734	3	1	90	1	0	0	0	0	1	0	0	0	12718	1377	48	2	457	2	PSME3	17	40990734	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	2347083	40990734	40204476	86	5806											
TMUB2	79089	hgsc.bcm.edu	37	17	42265113	42265113	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	42265113	T	C	42265113	5	2	90	1	0	0	0	0	0	0	1	0	16277	1652	57	3	39	3	TMUB2	17	42265113	Splice_Site	SNP	T	TCGA-B0-4691-01A-01D-1361-10	1274379	42265113	38930097	87	5807											
MED13	9969	hgsc.bcm.edu	37	17	60023848	60023848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	60023848	A	T	60023848	3	4	90	1	0	0	0	0	1	0	0	0	9437	14	1	5	22	5	MED13	17	60023848	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	17758735	60023848	21171362	88	5808											
HEXDC	284004	hgsc.bcm.edu	37	17	80391635	80391635	+	Silent	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	80391635	C	A	80391635	2	1	90	1	0	0	0	0	0	0	0	1	7082	581	21	4		4	HEXDC	17	80391635	Silent	SNP	C	TCGA-B0-4691-01A-01D-1361-10	20367787	80391635	803575	89	5809											
MYOM1	8736	hgsc.bcm.edu;ucsc.edu	37	18	3154964	3154964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	3154964	G	T	3154964	3	4	90	1	0	0	0	0	1	0	0	0	10098	942	33	4	3545	4	MYOM1	18	3154964	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10		3154964	74922284	90	5810											
SPIRE1	56907	hgsc.bcm.edu;ucsc.edu	37	18	12463349	12463349	+	Splice_Site	SNP	C	C	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	12463349	C	G	12463349	5	3	90	1	0	0	0	0	0	0	1	0	15083	492	17	4	655	4	SPIRE1	18	12463349	Splice_Site	SNP	C	TCGA-B0-4691-01A-01D-1361-10	9308385	12463349	65613899	91	5811											
ASXL3	80816	hgsc.bcm.edu;ucsc.edu	37	18	31311982	31311982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	31311982	A	T	31311982	3	4	90	1	0	0	0	0	1	0	0	0	1068	98	4	5	964	5	ASXL3	18	31311982	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	18848633	31311982	46765266	92	5812											
NOL4	8715	hgsc.bcm.edu;ucsc.edu	37	18	31538245	31538245	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	31538245	A	T	31538245	3	4	90	1	0	0	0	0	1	0	0	0	10531	214	8	5	742	5	NOL4	18	31538245	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	226263	31538245	46539003	93	5813											
MYO5B	4645	hgsc.bcm.edu;ucsc.edu	37	18	47518664	47518664	+	Silent	SNP	G	G	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	47518664	G	C	47518664	2	2	90	1	0	0	0	0	0	0	0	1	10086	929	33	4		4	MYO5B	18	47518664	Silent	SNP	G	TCGA-B0-4691-01A-01D-1361-10	15980419	47518664	30558584	94	5814											
ANGPTL4	51129	hgsc.bcm.edu;ucsc.edu	37	19	8438683	8438683	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	8438683	C	G	8438683	3	3	90	1	0	0	0	0	1	0	0	0	616	903	32	4	1160	4	ANGPTL4	19	8438683	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10		8438683	50690300	95	5815											
DOCK6	57572	hgsc.bcm.edu;ucsc.edu	37	19	11314960	11314960	+	Silent	SNP	G	G	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	11314960	G	A	11314960	2	1	90	1	0	0	0	0	0	0	0	1	4693	1335	47	2		2	DOCK6	19	11314960	Silent	SNP	G	TCGA-B0-4691-01A-01D-1361-10	2876277	11314960	47814023	96	5816											
SYCE2	256126	hgsc.bcm.edu	37	19	13011345	13011345	+	Silent	SNP	A	A	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	13011345	A	G	13011345	2	3	90	1	0	0	0	0	0	0	0	1	15441	11	1	3		3	SYCE2	19	13011345	Silent	SNP	A	TCGA-B0-4691-01A-01D-1361-10	1696385	13011345	46117638	97	5817											
DNAJB1	3337	hgsc.bcm.edu	37	19	14627478	14627478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	14627478	G	C	14627478	3	2	90	1	0	0	0	0	1	0	0	0	4617	1066	37	4	438	4	DNAJB1	19	14627478	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	1616133	14627478	44501505	98	5818											
TMEM38A	79041	hgsc.bcm.edu	37	19	16793274	16793274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	16793274	G	C	16793274	3	2	90	1	0	0	0	0	1	0	0	0	16171	1058	37	4	523	4	TMEM38A	19	16793274	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	2165796	16793274	42335709	99	5819											
PLAUR	5329	hgsc.bcm.edu	37	19	44153251	44153251	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	44153251	A	T	44153251	3	4	90	1	0	0	0	0	1	0	0	0	12030	304	11	5	308	5	PLAUR	19	44153251	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	27359977	44153251	14975732	100	5820											
SIGLEC12	89858	hgsc.bcm.edu;ucsc.edu	37	19	52001300	52001300	+	Silent	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	52001300	C	A	52001300	2	1	90	1	0	0	0	0	0	0	0	1	14321	813	29	4		4	SIGLEC12	19	52001300	Silent	SNP	C	TCGA-B0-4691-01A-01D-1361-10	7848049	52001300	7127683	101	5821											
LILRA1	11024	hgsc.bcm.edu	37	19	55106622	55106622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	55106622	G	T	55106622	3	4	90	1	0	0	0	0	1	0	0	0	8791	1232	43	4	430	4	LILRA1	19	55106622	Missense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	3105322	55106622	4022361	102	5822											
ZNF544	27300	hgsc.bcm.edu	37	19	58772926	58772926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	58772926	A	C	58772926	3	2	90	1	0	0	0	0	1	0	0	0	17989	243	9	5	968	5	ZNF544	19	58772926	Missense_Mutation	SNP	A	TCGA-B0-4691-01A-01D-1361-10	3666304	58772926	356057	103	5823											
ZNFX1	57169	hgsc.bcm.edu;ucsc.edu	37	20	47874148	47874148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	G	47874148	C	G	47874148	3	3	90	1	0	0	0	0	1	0	0	0	18217	922	32	4	3314	4	ZNFX1	20	47874148	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10		47874148	15151372	104	5824											
SETD4	54093	hgsc.bcm.edu;ucsc.edu	37	21	37416207	37416207	+	Silent	SNP	C	C	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	37416207	C	T	37416207	2	4	90	1	0	0	0	0	0	0	0	1	14146	871	31	1		1	SETD4	21	37416207	Silent	SNP	C	TCGA-B0-4691-01A-01D-1361-10		37416207	10713688	105	5825											
ARSF	416	hgsc.bcm.edu	37	X	3007543	3007543	+	Silent	SNP	T	T	C	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	C	3007543	T	C	3007543	2	2	90	1	0	0	0	0	0	0	0	1	991	1635	57	3		3	ARSF	23	3007543	Silent	SNP	T	TCGA-B0-4691-01A-01D-1361-10		3007543	152263017	106	5826											
DIAPH2	1730	hgsc.bcm.edu	37	X	96212938	96212938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	96212938	C	T	96212938	3	4	90	1	0	0	0	0	1	0	0	0	4521	855	30	2	1788	2	DIAPH2	23	96212938	Missense_Mutation	SNP	C	TCGA-B0-4691-01A-01D-1361-10	93205395	96212938	59057622	107	5827											
TMEM164	84187	hgsc.bcm.edu	37	X	109247114	109247114	+	Silent	SNP	C	C	A	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	A	109247114	C	A	109247114	2	1	90	1	0	0	0	0	0	0	0	1	16091	759	27	4		4	TMEM164	23	109247114	Silent	SNP	C	TCGA-B0-4691-01A-01D-1361-10	13034176	109247114	46023446	108	5828											
BCORL1	63035	hgsc.bcm.edu	37	X	129148822	129148822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4691-01A-01D-1361-10	TCGA-B0-4691-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	349d9df2-d3d8-46ba-b3d6-f34692b1f9fd	dd70d55f-aea5-4de6-89bf-e4e6cd32f2f3	T	129148822	G	T	129148822	4	4	90	1	0	0	0	0	0	1	0	0	1387	1059	37	4	2084	4	BCORL1	23	129148822	Nonsense_Mutation	SNP	G	TCGA-B0-4691-01A-01D-1361-10	19901708	129148822	26121738	109	5829											
AURKAIP1	54998	hgsc.bcm.edu	37	1	1309259	1309259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	1309259	C	A	1309259	3	1	91	1	0	0	0	0	1	0	0	0	1222	738	26	4	81	4	AURKAIP1	1	1309259	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10		1309259	247941362	1	5830											
SPSB1	80176	hgsc.bcm.edu;ucsc.edu	37	1	9416577	9416577	+	Silent	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	9416577	G	A	9416577	2	1	91	1	0	0	0	0	0	0	0	1	15124	1364	48	2		2	SPSB1	1	9416577	Silent	SNP	G	TCGA-B0-4693-01A-01D-1361-10	8107318	9416577	239834044	2	5831											
GJB4	127534	hgsc.bcm.edu;ucsc.edu	37	1	35226981	35226981	+	Silent	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	35226981	G	A	35226981	2	1	91	1	0	0	0	0	0	0	0	1	6417	991	35	2		2	GJB4	1	35226981	Silent	SNP	G	TCGA-B0-4693-01A-01D-1361-10	25810404	35226981	214023640	3	5832											
MAP7D1	55700	hgsc.bcm.edu	37	1	36644627	36644627	+	Splice_Site	SNP	G	G	A	rs111254290	alternate_allele	TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	36644627	G	A	36644627	5	1	91	1	0	0	0	0	0	0	1	0	9274	1275	44	2	2177	2	MAP7D1	1	36644627	Splice_Site	SNP	G	TCGA-B0-4693-01A-01D-1361-10	1417646	36644627	212605994	4	5833											
CTTNBP2NL	55917	hgsc.bcm.edu;ucsc.edu	37	1	112997122	112997122	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	112997122	G	T	112997122	4	4	91	1	0	0	0	0	0	1	0	0	4048	1291	45	4	392	4	CTTNBP2NL	1	112997122	Nonsense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	76352495	112997122	136253499	5	5834											
CRNN	49860	hgsc.bcm.edu	37	1	152384629	152384629	+	Silent	SNP	C	C	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	152384629	C	T	152384629	2	4	91	1	0	0	0	0	0	0	0	1	3894	755	27	1		1	CRNN	1	152384629	Silent	SNP	C	TCGA-B0-4693-01A-01D-1361-10	39387507	152384629	96865992	6	5835											
ZBTB37	84614	hgsc.bcm.edu;ucsc.edu	37	1	173854955	173854955	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	173854955	T	A	173854955	3	1	91	1	0	0	0	0	1	0	0	0	17550	1667	58	5	1278	5	ZBTB37	1	173854955	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	21470326	173854955	75395666	7	5836											
PLA2G4A	5321	hgsc.bcm.edu	37	1	186916003	186916003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	186916003	G	T	186916003	3	4	91	1	0	0	0	0	1	0	0	0	12008	1377	48	4	1216	4	PLA2G4A	1	186916003	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	13061048	186916003	62334618	8	5837											
TFB2M	64216	hgsc.bcm.edu	37	1	246720752	246720752	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	246720752	T	G	246720752	3	3	91	1	0	0	0	0	1	0	0	0	15806	1850	64	5	727	5	TFB2M	1	246720752	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	59804749	246720752	2529869	9	5838											
PREB	10113	hgsc.bcm.edu;ucsc.edu	37	2	27355147	27355147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	27355147	G	T	27355147	3	4	91	1	0	0	0	0	1	0	0	0	12480	1000	35	4	392	4	PREB	2	27355147	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10		27355147	215844226	10	5839											
NEB	4703	hgsc.bcm.edu	37	2	152554080	152554080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	152554080	A	G	152554080	3	3	91	1	0	0	0	0	1	0	0	0	10309	43	2	3	25127	3	NEB	2	152554080	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10	125198933	152554080	90645293	11	5840											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179401198	179401198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	179401198	T	A	179401198	3	1	91	1	0	0	0	0	1	0	0	0	16747	1841	64	5	7727	5	TTN	2	179401198	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	26847118	179401198	63798175	12	5841											
DNAJC10	54431	hgsc.bcm.edu;ucsc.edu	37	2	183640093	183640093	+	Silent	SNP	T	T	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	183640093	T	C	183640093	2	2	91	1	0	0	0	0	0	0	0	1	4631	1567	55	3		3	DNAJC10	2	183640093	Silent	SNP	T	TCGA-B0-4693-01A-01D-1361-10	4238895	183640093	59559280	13	5842											
SATB2	23314	hgsc.bcm.edu	37	2	200193590	200193590	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	200193590	G	C	200193590	3	2	91	1	0	0	0	0	1	0	0	0	13867	1377	48	4	1000	4	SATB2	2	200193590	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	16553497	200193590	43005783	14	5843											
PAX3	5077	hgsc.bcm.edu;ucsc.edu	37	2	223066781	223066781	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	223066781	G	C	223066781	3	2	91	1	0	0	0	0	1	0	0	0	11487	1252	44	4	255	4	PAX3	2	223066781	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	22873191	223066781	20132592	15	5844											
SLC16A14	151473	hgsc.bcm.edu;ucsc.edu	37	2	230914571	230914571	+	Silent	SNP	C	C	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	230914571	C	G	230914571	2	3	91	1	0	0	0	0	0	0	0	1	14420	871	31	4		4	SLC16A14	2	230914571	Silent	SNP	C	TCGA-B0-4693-01A-01D-1361-10	7847790	230914571	12284802	16	5845											
C3orf10	0	hgsc.bcm.edu;ucsc.edu	37	3	10167959	10167959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	10167959	A	C	10167959	3	2	91	1	0	0	0	0	1	0	0	0	2209	15	1	5	218	5	C3orf10	3	10167959	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10		10167959	187854471	17	5846											
MLH1	4292	hgsc.bcm.edu;ucsc.edu	37	3	37067407	37067407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	37067407	G	A	37067407	3	1	91	1	0	0	0	0	1	0	0	0	9624	1029	36	2	1364	2	MLH1	3	37067407	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	26899448	37067407	160955023	18	5847											
RBM6	10180	hgsc.bcm.edu;ucsc.edu	37	3	50006037	50006037	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	50006037	T	A	50006037	3	1	91	1	0	0	0	0	1	0	0	0	13157	1780	62	5	1185	5	RBM6	3	50006037	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	12938630	50006037	148016393	19	5848											
ADAMTS9	56999	hgsc.bcm.edu	37	3	64607988	64607988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	64607988	T	G	64607988	3	3	91	1	0	0	0	0	1	0	0	0	273	1850	64	5	3323	5	ADAMTS9	3	64607988	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	14601951	64607988	133414442	20	5849											
ARHGAP31	57514	hgsc.bcm.edu	37	3	119133104	119133104	+	Silent	SNP	T	T	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	119133104	T	C	119133104	2	2	91	1	0	0	0	0	0	0	0	1	880	1432	50	3		3	ARHGAP31	3	119133104	Silent	SNP	T	TCGA-B0-4693-01A-01D-1361-10	54525116	119133104	78889326	21	5850											
PIK3CA	5290	hgsc.bcm.edu;ucsc.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	178936091	G	A	178936091	3	1	91	1	0	0	0	0	1	0	0	0	11920	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	59802987	178936091	19086339	22	5851											
IL1RAP	3556	hgsc.bcm.edu;ucsc.edu	37	3	190322001	190322001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	190322001	T	G	190322001	3	3	91	1	0	0	0	0	1	0	0	0	7667	1841	64	5	155	5	IL1RAP	3	190322001	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	11385910	190322001	7700429	23	5852											
TBC1D19	55296	hgsc.bcm.edu;ucsc.edu	37	4	26640457	26640457	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	26640457	G	A	26640457	5	1	91	1	0	0	0	0	0	0	1	0	15619	1275	44	2	456	2	TBC1D19	4	26640457	Splice_Site	SNP	G	TCGA-B0-4693-01A-01D-1361-10		26640457	164513819	24	5853											
NFXL1	152518	hgsc.bcm.edu;ucsc.edu	37	4	47877157	47877157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	47877157	A	G	47877157	3	3	91	1	0	0	0	0	1	0	0	0	10395	391	14	3	526	3	NFXL1	4	47877157	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10	21236700	47877157	143277119	25	5854											
NFXL1	152518	hgsc.bcm.edu;ucsc.edu	37	4	47877194	47877194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	47877194	C	T	47877194	3	4	91	1	0	0	0	0	1	0	0	0	10395	710	25	2	563	2	NFXL1	4	47877194	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	37	47877194	143277082	26	5855											
DDIT4L	115265	hgsc.bcm.edu	37	4	101109221	101109221	+	Silent	SNP	C	C	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	101109221	C	A	101109221	2	1	91	1	0	0	0	0	0	0	0	1	4334	465	17	4		4	DDIT4L	4	101109221	Silent	SNP	C	TCGA-B0-4693-01A-01D-1361-10	53232027	101109221	90045055	27	5856											
AHRR	57491	hgsc.bcm.edu	37	5	413518	413518	+	Silent	SNP	A	A	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	413518	A	G	413518	2	3	91	1	0	0	0	0	0	0	0	1	417	117	5	3		3	AHRR	5	413518	Silent	SNP	A	TCGA-B0-4693-01A-01D-1361-10		413518	180501742	28	5857											
DNAH5	1767	hgsc.bcm.edu;ucsc.edu	37	5	13793789	13793789	+	Missense_Mutation	SNP	T	T	C	rs139797525		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	13793789	T	C	13793789	3	2	91	1	0	0	0	0	1	0	0	0	4606	1754	61	3	5939	3	DNAH5	5	13793789	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	13380271	13793789	167121471	29	5858											
ZFR	51663	hgsc.bcm.edu	37	5	32390431	32390431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	32390431	C	T	32390431	3	4	91	1	0	0	0	0	1	0	0	0	17671	681	24	2	1168	2	ZFR	5	32390431	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	18596642	32390431	148524829	30	5859											
FYB	2533	hgsc.bcm.edu	37	5	39137714	39137714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	39137714	C	G	39137714	3	3	91	1	0	0	0	0	1	0	0	0	6131	912	32	4	1038	4	FYB	5	39137714	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	6747283	39137714	141777546	31	5860											
MAP1B	4131	hgsc.bcm.edu;ucsc.edu	37	5	71495734	71495734	+	Silent	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	71495734	G	A	71495734	2	1	91	1	0	0	0	0	0	0	0	1	9235	1103	39	1		1	MAP1B	5	71495734	Silent	SNP	G	TCGA-B0-4693-01A-01D-1361-10	32358020	71495734	109419526	32	5861											
ST8SIA4	7903	hgsc.bcm.edu;ucsc.edu	37	5	100192026	100192026	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	100192026	G	T	100192026	4	4	91	1	0	0	0	0	0	1	0	0	15246	1294	45	4	509	4	ST8SIA4	5	100192026	Nonsense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	28696292	100192026	80723234	33	5862											
PCDHB11	56125	hgsc.bcm.edu;ucsc.edu	37	5	140580452	140580452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	140580452	A	G	140580452	3	3	91	1	0	0	0	0	1	0	0	0	11543	420	15	3	1107	3	PCDHB11	5	140580452	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10	40388426	140580452	40334808	34	5863											
FAM83B	222584	hgsc.bcm.edu;ucsc.edu	37	6	54791190	54791190	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	54791190	A	T	54791190	3	4	91	1	0	0	0	0	1	0	0	0	5641	449	16	5	472	5	FAM83B	6	54791190	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10		54791190	116323877	35	5864											
COL21A1	81578	hgsc.bcm.edu;ucsc.edu	37	6	55942327	55942327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	55942327	C	A	55942327	3	1	91	1	0	0	0	0	1	0	0	0	3682	695	24	4	1068	4	COL21A1	6	55942327	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	1151137	55942327	115172740	36	5865											
MANEA	79694	hgsc.bcm.edu	37	6	96053922	96053922	+	Missense_Mutation	SNP	T	T	A	rs35772543	bycluster;byfrequency;by1000genomes	TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	96053922	T	A	96053922	3	1	91	1	0	0	0	0	1	0	0	0	9228	1493	52	5	1044	5	MANEA	6	96053922	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	40111595	96053922	75061145	37	5866											
MACC1	346389	hgsc.bcm.edu	37	7	20199087	20199087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	20199087	A	T	20199087	3	4	91	1	0	0	0	0	1	0	0	0	9150	330	12	5	1673	5	MACC1	7	20199087	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10		20199087	138939576	38	5867											
PTPN12	5782	hgsc.bcm.edu;ucsc.edu	37	7	77256100	77256100	+	Silent	SNP	T	T	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	77256100	T	G	77256100	2	3	91	1	0	0	0	0	0	0	0	1	12792	1596	56	5		5	PTPN12	7	77256100	Silent	SNP	T	TCGA-B0-4693-01A-01D-1361-10	57057013	77256100	81882563	39	5868											
C7orf61	402573	hgsc.bcm.edu;ucsc.edu	37	7	100061219	100061219	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	100061219	G	A	100061219	4	1	91	1	0	0	0	0	0	1	0	0	2410	1357	47	2	474	2	C7orf61	7	100061219	Nonsense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	22805119	100061219	59077444	40	5869											
SPAG11A	653423	hgsc.bcm.edu	37	8	7706329	7706329	+	Missense_Mutation	SNP	C	C	T	rs78995392	byfrequency	TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	7706329	C	T	7706329	3	4	91	1	0	0	0	0	1	0	0	0	14989	527	19	1	184	1	SPAG11A	8	7706329	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10		7706329	138657693	41	5870											
UBR5	51366	hgsc.bcm.edu;ucsc.edu	37	8	103266717	103266717	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	103266717	G	T	103266717	4	4	91	1	0	0	0	0	0	1	0	0	16917	1294	45	4	190	4	UBR5	8	103266717	Nonsense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	95560388	103266717	43097305	42	5871											
PKHD1L1	93035	hgsc.bcm.edu;ucsc.edu	37	8	110464467	110464467	+	Silent	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	110464467	T	A	110464467	2	1	91	1	0	0	0	0	0	0	0	1	11979	1538	54	5		5	PKHD1L1	8	110464467	Silent	SNP	T	TCGA-B0-4693-01A-01D-1361-10	7197750	110464467	35899555	43	5872											
NCBP1	4686	hgsc.bcm.edu;ucsc.edu	37	9	100409780	100409780	+	Silent	SNP	C	C	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	100409780	C	T	100409780	2	4	91	1	0	0	0	0	0	0	0	1	10218	726	26	2		2	NCBP1	9	100409780	Silent	SNP	C	TCGA-B0-4693-01A-01D-1361-10		100409780	40803651	44	5873											
EXOSC2	23404	hgsc.bcm.edu	37	9	133578519	133578519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	133578519	T	A	133578519	3	1	91	1	0	0	0	0	1	0	0	0	5317	1580	55	5	782	5	EXOSC2	9	133578519	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	33168739	133578519	7634912	45	5874											
LAMC3	10319	hgsc.bcm.edu	37	9	133928345	133928345	+	Silent	SNP	C	C	T	rs12349966	bycluster;byfrequency;by1000genomes	TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	133928345	C	T	133928345	2	4	91	1	0	0	0	0	0	0	0	1	8623	738	26	2		2	LAMC3	9	133928345	Silent	SNP	C	TCGA-B0-4693-01A-01D-1361-10	349826	133928345	7285086	46	5875											
FAM78A	286336	hgsc.bcm.edu	37	9	134136486	134136486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	134136486	C	A	134136486	3	1	91	1	0	0	0	0	1	0	0	0	5633	595	21	4	280	4	FAM78A	9	134136486	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	208141	134136486	7076945	47	5876											
PITRM1	10531	hgsc.bcm.edu	37	10	3187802	3187802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	3187802	G	T	3187802	3	4	91	1	0	0	0	0	1	0	0	0	11960	1232	43	4	698	4	PITRM1	10	3187802	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10		3187802	132346945	48	5877											
CDH23	64072	hgsc.bcm.edu	37	10	73483833	73483833	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	73483833	T	A	73483833	3	1	91	1	0	0	0	0	1	0	0	0	3110	1841	64	5	3818	5	CDH23	10	73483833	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	70296031	73483833	62050914	49	5878											
HBB	3043	hgsc.bcm.edu	37	11	5247865	5247865	+	Missense_Mutation	SNP	A	A	C	rs35693898	bycluster;alternate_allele	TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	5247865	A	C	5247865	3	2	91	1	0	0	0	0	1	0	0	0	6985	14	1	5	194	5	HBB	11	5247865	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10		5247865	129758651	50	5879											
SLC39A13	91252	hgsc.bcm.edu	37	11	47434010	47434010	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	47434010	A	T	47434010	3	4	91	1	0	0	0	0	1	0	0	0	14629	275	10	5	539	5	SLC39A13	11	47434010	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10	42186145	47434010	87572506	51	5880											
DHCR7	1717	hgsc.bcm.edu	37	11	71152418	71152418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	71152418	T	C	71152418	3	2	91	1	0	0	0	0	1	0	0	0	4479	1841	64	3	962	3	DHCR7	11	71152418	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	23718408	71152418	63854098	52	5881											
KCTD21	283219	hgsc.bcm.edu;ucsc.edu	37	11	77885169	77885169	+	Silent	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	77885169	G	A	77885169	2	1	91	1	0	0	0	0	0	0	0	1	8116	1281	45	2		2	KCTD21	11	77885169	Silent	SNP	G	TCGA-B0-4693-01A-01D-1361-10	6732751	77885169	57121347	53	5882											
CCDC82	79780	hgsc.bcm.edu	37	11	96104275	96104275	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	96104275	T	A	96104275	4	1	91	1	0	0	0	0	0	1	0	0	2858	1850	64	5	539	5	CCDC82	11	96104275	Nonsense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	18219106	96104275	38902241	54	5883											
ATM	472	hgsc.bcm.edu;ucsc.edu	37	11	108153496	108153496	+	Silent	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	108153496	T	A	108153496	2	1	91	1	0	0	0	0	0	0	0	1	1109	1538	54	5		5	ATM	11	108153496	Silent	SNP	T	TCGA-B0-4693-01A-01D-1361-10	12049221	108153496	26853020	55	5884											
USP28	57646	hgsc.bcm.edu	37	11	113684670	113684670	+	Missense_Mutation	SNP	C	C	A	rs137875806		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	113684670	C	A	113684670	3	1	91	1	0	0	0	0	1	0	0	0	17070	912	32	4	1597	4	USP28	11	113684670	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	5531174	113684670	21321846	56	5885											
B4GALNT3	283358	hgsc.bcm.edu;ucsc.edu	37	12	657254	657254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	657254	C	A	657254	3	1	91	1	0	0	0	0	1	0	0	0	1268	594	21	4	802	4	B4GALNT3	12	657254	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10		657254	133194641	57	5886											
PTPRO	5800	hgsc.bcm.edu	37	12	15661567	15661567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	15661567	T	G	15661567	3	3	91	1	0	0	0	0	1	0	0	0	12822	1838	64	5	1356	5	PTPRO	12	15661567	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	15004313	15661567	118190328	58	5887											
MFSD5	84975	hgsc.bcm.edu	37	12	53647204	53647204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	53647204	G	T	53647204	3	4	91	1	0	0	0	0	1	0	0	0	9541	1183	41	4	912	4	MFSD5	12	53647204	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	37985637	53647204	80204691	59	5888											
ITGA5	3678	hgsc.bcm.edu;ucsc.edu	37	12	54798984	54798984	+	Silent	SNP	G	G	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	54798984	G	T	54798984	2	4	91	1	0	0	0	0	0	0	0	1	7886	1219	43	4		4	ITGA5	12	54798984	Silent	SNP	G	TCGA-B0-4693-01A-01D-1361-10	1151780	54798984	79052911	60	5889											
CDK2	1017	hgsc.bcm.edu	37	12	56363324	56363324	+	Silent	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	56363324	G	A	56363324	2	1	91	1	0	0	0	0	0	0	0	1	3138	1335	47	2		2	CDK2	12	56363324	Silent	SNP	G	TCGA-B0-4693-01A-01D-1361-10	1564340	56363324	77488571	61	5890											
WSCD2	9671	hgsc.bcm.edu;ucsc.edu	37	12	108641973	108641973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	108641973	C	A	108641973	3	1	91	1	0	0	0	0	1	0	0	0	17419	564	20	4	1581	4	WSCD2	12	108641973	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	52278649	108641973	25209922	62	5891											
DDX54	79039	hgsc.bcm.edu	37	12	113603616	113603616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	113603616	G	A	113603616	3	1	91	1	0	0	0	0	1	0	0	0	4374	1232	43	2	1044	2	DDX54	12	113603616	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	4961643	113603616	20248279	63	5892											
CLIP1	6249	hgsc.bcm.edu;ucsc.edu	37	12	122812834	122812834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	122812834	C	G	122812834	3	3	91	1	0	0	0	0	1	0	0	0	3534	922	32	4	1353	4	CLIP1	12	122812834	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	9209218	122812834	11039061	64	5893											
SOHLH2	54937	hgsc.bcm.edu	37	13	36767945	36767945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	36767945	T	A	36767945	3	1	91	1	0	0	0	0	1	0	0	0	14937	1841	64	5	990	5	SOHLH2	13	36767945	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10		36767945	78401933	65	5894											
FOXO1	2308	hgsc.bcm.edu	37	13	41134062	41134062	+	Silent	SNP	A	A	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	41134062	A	G	41134062	2	3	91	1	0	0	0	0	0	0	0	1	6030	446	16	3		3	FOXO1	13	41134062	Silent	SNP	A	TCGA-B0-4693-01A-01D-1361-10	4366117	41134062	74035816	66	5895											
SLITRK6	84189	hgsc.bcm.edu;ucsc.edu	37	13	86370165	86370165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	86370165	T	G	86370165	3	3	91	1	0	0	0	0	1	0	0	0	14760	1725	60	5	2050	5	SLITRK6	13	86370165	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	45236103	86370165	28799713	67	5896											
ADAM21	8747	hgsc.bcm.edu	37	14	70925438	70925438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	70925438	C	T	70925438	3	4	91	1	0	0	0	0	1	0	0	0	243	768	27	1	1224	1	ADAM21	14	70925438	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10		70925438	36424102	68	5897											
SORD	6652	hgsc.bcm.edu	37	15	45364534	45364534	+	Missense_Mutation	SNP	A	A	C	rs930337	bycluster;bysubmitter	TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	45364534	A	C	45364534	3	2	91	1	0	0	0	0	1	0	0	0	14946	43	2	5	836	5	SORD	15	45364534	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10		45364534	57166858	69	5898											
NOMO2	283820	hgsc.bcm.edu	37	16	18544484	18544484	+	Missense_Mutation	SNP	C	C	T	rs453341	bycluster;by2hit2allele;byhapmap	TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	18544484	C	T	18544484	3	4	91	1	0	0	0	0	1	0	0	0	10539	652	23	1	2653	1	NOMO2	16	18544484	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10		18544484	71810269	70	5899											
N4BP1	9683	hgsc.bcm.edu;ucsc.edu	37	16	48596217	48596217	+	Silent	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	48596217	G	A	48596217	2	1	91	1	0	0	0	0	0	0	0	1	10116	933	33	2		2	N4BP1	16	48596217	Silent	SNP	G	TCGA-B0-4693-01A-01D-1361-10	30051733	48596217	41758536	71	5900											
NUP93	9688	hgsc.bcm.edu;ucsc.edu	37	16	56871614	56871614	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	56871614	A	C	56871614	3	2	91	1	0	0	0	0	1	0	0	0	10779	43	2	5	2060	5	NUP93	16	56871614	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10	8275397	56871614	33483139	72	5901											
TCF25	22980	hgsc.bcm.edu	37	16	89977623	89977623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	89977623	G	A	89977623	3	1	91	1	0	0	0	0	1	0	0	0	15705	1291	45	2	2078	2	TCF25	16	89977623	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	33106009	89977623	377130	73	5902											
USP6	9098	hgsc.bcm.edu;ucsc.edu	37	17	5048736	5048736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	5048736	A	G	5048736	3	3	91	1	0	0	0	0	1	0	0	0	17098	449	16	3	2099	3	USP6	17	5048736	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10		5048736	76146474	74	5903											
TXNDC17	84817	hgsc.bcm.edu;ucsc.edu	37	17	6545596	6545596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	6545596	A	C	6545596	3	2	91	1	0	0	0	0	1	0	0	0	16808	243	9	5	265	5	TXNDC17	17	6545596	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10	1496860	6545596	74649614	75	5904											
STARD3	10948	hgsc.bcm.edu;ucsc.edu	37	17	37816464	37816464	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	37816464	G	T	37816464	4	4	91	1	0	0	0	0	0	1	0	0	15269	1188	41	4	843	4	STARD3	17	37816464	Nonsense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	31270868	37816464	43378746	76	5905											
DHX40	79665	hgsc.bcm.edu	37	17	57656854	57656854	+	Silent	SNP	C	C	T	rs2697409		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	57656854	C	T	57656854	2	4	91	1	0	0	0	0	0	0	0	1	4514	883	31	1		1	DHX40	17	57656854	Silent	SNP	C	TCGA-B0-4693-01A-01D-1361-10	19840390	57656854	23538356	77	5906											
TLK2	11011	hgsc.bcm.edu	37	17	60689867	60689867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	60689867	C	A	60689867	3	1	91	1	0	0	0	0	1	0	0	0	15956	623	22	4	2276	4	TLK2	17	60689867	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	3033013	60689867	20505343	78	5907											
CD300E	342510	hgsc.bcm.edu	37	17	72619748	72619748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	72619748	G	A	72619748	3	1	91	1	0	0	0	0	1	0	0	0	3000	1232	43	2	620	2	CD300E	17	72619748	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10	11929881	72619748	8575462	79	5908											
HEXDC	284004	hgsc.bcm.edu	37	17	80399717	80399717	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	80399717	A	C	80399717	3	2	91	1	0	0	0	0	1	0	0	0	7082	72	3	5	1332	5	HEXDC	17	80399717	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10	7779969	80399717	795493	80	5909											
CLUL1	27098	hgsc.bcm.edu	37	18	644931	644931	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	644931	G	C	644931	3	2	91	1	0	0	0	0	1	0	0	0	3572	1001	35	4	1257	4	CLUL1	18	644931	Missense_Mutation	SNP	G	TCGA-B0-4693-01A-01D-1361-10		644931	77432317	81	5910											
CABYR	26256	hgsc.bcm.edu	37	18	21735912	21735912	+	Silent	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	21735912	T	A	21735912	2	1	91	1	0	0	0	0	0	0	0	1	2538	1509	53	5		5	CABYR	18	21735912	Silent	SNP	T	TCGA-B0-4693-01A-01D-1361-10	21090981	21735912	56341336	82	5911											
MOCOS	55034	hgsc.bcm.edu	37	18	33848526	33848526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	33848526	T	C	33848526	3	2	91	1	0	0	0	0	1	0	0	0	9696	1435	50	3	2603	3	MOCOS	18	33848526	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	12112614	33848526	44228722	83	5912											
FAM69C	125704	hgsc.bcm.edu	37	18	72103854	72103854	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	72103854	T	A	72103854	3	1	91	1	0	0	0	0	1	0	0	0	5611	1783	62	5	121	5	FAM69C	18	72103854	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	38255328	72103854	5973394	84	5913											
ZFR2	23217	hgsc.bcm.edu	37	19	3833722	3833722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	3833722	A	T	3833722	3	4	91	1	0	0	0	0	1	0	0	0	17672	391	14	5	2568	5	ZFR2	19	3833722	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10		3833722	55295261	85	5914											
RANBP3	8498	hgsc.bcm.edu	37	19	5923257	5923257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	5923257	A	C	5923257	3	2	91	1	0	0	0	0	1	0	0	0	13042	131	5	5	566	5	RANBP3	19	5923257	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10	2089535	5923257	53205726	86	5915											
TRIP10	9322	hgsc.bcm.edu	37	19	6744909	6744909	+	Silent	SNP	C	C	T	rs62125119	bycluster;byfrequency;by1000genomes	TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	6744909	C	T	6744909	2	4	91	1	0	0	0	0	0	0	0	1	16566	639	23	1		1	TRIP10	19	6744909	Silent	SNP	C	TCGA-B0-4693-01A-01D-1361-10	821652	6744909	52384074	87	5916											
BEST2	54831	hgsc.bcm.edu	37	19	12867047	12867047	+	Silent	SNP	C	C	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	12867047	C	T	12867047	2	4	91	1	0	0	0	0	0	0	0	1	1405	489	17	2		2	BEST2	19	12867047	Silent	SNP	C	TCGA-B0-4693-01A-01D-1361-10	6122138	12867047	46261936	88	5917											
KPTN	11133	hgsc.bcm.edu	37	19	47980067	47980067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	47980067	T	C	47980067	3	2	91	1	0	0	0	0	1	0	0	0	8444	1406	49	3	330	3	KPTN	19	47980067	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10	35113020	47980067	11148916	89	5918											
RASIP1	54922	hgsc.bcm.edu	37	19	49224073	49224073	+	Silent	SNP	G	G	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	49224073	G	C	49224073	2	2	91	1	0	0	0	0	0	0	0	1	13091	1103	39	4		4	RASIP1	19	49224073	Silent	SNP	G	TCGA-B0-4693-01A-01D-1361-10	1244006	49224073	9904910	90	5919											
PYGB	5834	hgsc.bcm.edu;ucsc.edu	37	20	25260932	25260932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	C	25260932	T	C	25260932	3	2	91	1	0	0	0	0	1	0	0	0	12873	1406	49	3	1161	3	PYGB	20	25260932	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10		25260932	37764588	91	5920											
GGT7	2686	hgsc.bcm.edu	37	20	33437824	33437824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	T	33437824	C	T	33437824	3	4	91	1	0	0	0	0	1	0	0	0	6371	826	29	2	231	2	GGT7	20	33437824	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	8176892	33437824	29587696	92	5921											
MYH7B	57644	hgsc.bcm.edu	37	20	33567548	33567548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	33567548	C	A	33567548	3	1	91	1	0	0	0	0	1	0	0	0	10047	680	24	4	427	4	MYH7B	20	33567548	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	129724	33567548	29457972	93	5922											
C20orf132	0	hgsc.bcm.edu	37	20	35752076	35752077	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	-	35752077	CA	-	35752076	7	5	91	1	0	1	0	1	0	0	0	0	2088	826	29	0	1256	0	C20orf132	20	35752076	Frame_Shift_Del	DEL	CA	TCGA-B0-4693-01A-01D-1361-10	2184528	35752076	27273444	94	5923											
L3MBTL	0	hgsc.bcm.edu	37	20	42162041	42162041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	42162041	C	A	42162041	3	1	91	1	0	0	0	0	1	0	0	0	8598	623	22	4	1264	4	L3MBTL	20	42162041	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10	6409965	42162041	20863479	95	5924											
TMPRSS2	7113	hgsc.bcm.edu	37	21	42861492	42861492	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	42861492	C	G	42861492	3	3	91	1	0	0	0	0	1	0	0	0	16259	825	29	4	1255	4	TMPRSS2	21	42861492	Missense_Mutation	SNP	C	TCGA-B0-4693-01A-01D-1361-10		42861492	5268403	96	5925											
AIFM3	150209	hgsc.bcm.edu	37	22	21332205	21332205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	21332205	T	A	21332205	3	1	91	1	0	0	0	0	1	0	0	0	428	1841	64	5	1464	5	AIFM3	22	21332205	Missense_Mutation	SNP	T	TCGA-B0-4693-01A-01D-1361-10		21332205	29972361	97	5926											
GPR112	139378	hgsc.bcm.edu	37	X	135498624	135498624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	135498624	A	G	135498624	3	3	91	1	0	0	0	0	1	0	0	0	6636	131	5	3	9307	3	GPR112	23	135498624	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10		135498624	19771936	98	5927											
CDR1	1038	hgsc.bcm.edu;ucsc.edu	37	X	139865947	139865947	+	Silent	SNP	G	G	A	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	A	139865947	G	A	139865947	2	1	91	1	0	0	0	0	0	0	0	1	3173	932	33	2		2	CDR1	23	139865947	Silent	SNP	G	TCGA-B0-4693-01A-01D-1361-10	4367323	139865947	15404613	99	5928											
G6PD	2539	hgsc.bcm.edu	37	X	153763534	153763534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4693-01A-01D-1361-10	TCGA-B0-4693-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a4700126-bb06-4618-9aa9-555139e4403a	819dd79c-b4d5-49c4-9b60-4c652ab13a5f	G	153763534	A	G	153763534	3	3	91	1	0	0	0	0	1	0	0	0	6153	391	14	3	1249	3	G6PD	23	153763534	Missense_Mutation	SNP	A	TCGA-B0-4693-01A-01D-1361-10	13897587	153763534	1507026	100	5929											
RCC2	55920	hgsc.bcm.edu	37	1	17743003	17743003	+	Silent	SNP	T	T	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	17743003	T	A	17743003	2	1	92	1	0	0	0	0	0	0	0	1	13187	1538	54	5		5	RCC2	1	17743003	Silent	SNP	T	TCGA-B0-4694-01A-01D-1361-10		17743003	231507618	1	5930											
THBS3	7059	hgsc.bcm.edu	37	1	155174663	155174663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	155174663	T	A	155174663	3	1	92	1	0	0	0	0	1	0	0	0	15867	1551	54	5	2321	5	THBS3	1	155174663	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10	137431660	155174663	94075958	2	5931											
GON4L	54856	hgsc.bcm.edu	37	1	155735259	155735259	+	Silent	SNP	T	T	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	155735259	T	C	155735259	2	2	92	1	0	0	0	0	0	0	0	1	6579	1838	64	3		3	GON4L	1	155735259	Silent	SNP	T	TCGA-B0-4694-01A-01D-1361-10	560596	155735259	93515362	3	5932											
FCRLB	127943	hgsc.bcm.edu	37	1	161693269	161693269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	161693269	G	T	161693269	3	4	92	1	0	0	0	0	1	0	0	0	5808	962	34	4	175	4	FCRLB	1	161693269	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	5958010	161693269	87557352	4	5933											
XPR1	9213	hgsc.bcm.edu;ucsc.edu	37	1	180651511	180651511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	180651511	C	A	180651511	3	1	92	1	0	0	0	0	1	0	0	0	17463	796	28	4	91	4	XPR1	1	180651511	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10	18958242	180651511	68599110	5	5934											
PROX1	5629	hgsc.bcm.edu	37	1	214170552	214170552	+	Missense_Mutation	SNP	T	T	A	rs146788962	alternate_allele	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	214170552	T	A	214170552	3	1	92	1	0	0	0	0	1	0	0	0	12570	1725	60	5	676	5	PROX1	1	214170552	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10	33519041	214170552	35080069	6	5935											
PLB1	151056	hgsc.bcm.edu;ucsc.edu	37	2	28812901	28812901	+	Silent	SNP	T	T	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	28812901	T	C	28812901	2	2	92	1	0	0	0	0	0	0	0	1	12031	1654	58	3		3	PLB1	2	28812901	Silent	SNP	T	TCGA-B0-4694-01A-01D-1361-10		28812901	214386472	7	5936											
NFU1	27247	hgsc.bcm.edu	37	2	69650833	69650833	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	69650833	A	C	69650833	3	2	92	1	0	0	0	0	1	0	0	0	10393	242	9	5	605	5	NFU1	2	69650833	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	40837932	69650833	173548540	8	5937											
KIAA1310	0	hgsc.bcm.edu;ucsc.edu	37	2	97278654	97278654	+	Silent	SNP	A	A	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	97278654	A	G	97278654	2	3	92	1	0	0	0	0	0	0	0	1	8229	291	11	3		3	KIAA1310	2	97278654	Silent	SNP	A	TCGA-B0-4694-01A-01D-1361-10	27627821	97278654	145920719	9	5938											
FER1L5	90342	hgsc.bcm.edu;ucsc.edu	37	2	97366098	97366098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	97366098	G	A	97366098	3	1	92	1	0	0	0	0	1	0	0	0	5821	1233	43	2	5215	2	FER1L5	2	97366098	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	87444	97366098	145833275	10	5939											
ALS2CR11	151254	hgsc.bcm.edu	37	2	202352345	202352345	+	Missense_Mutation	SNP	C	C	A	rs149841146	alternate_allele	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	202352345	C	A	202352345	3	1	92	1	0	0	0	0	1	0	0	0	552	913	32	4	13	4	ALS2CR11	2	202352345	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10	104986247	202352345	40847028	11	5940											
GNAI2	2771	hgsc.bcm.edu	37	3	50295032	50295032	+	Silent	SNP	C	C	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	50295032	C	T	50295032	2	4	92	1	0	0	0	0	0	0	0	1	6512	776	27	1		1	GNAI2	3	50295032	Silent	SNP	C	TCGA-B0-4694-01A-01D-1361-10		50295032	147727398	12	5941											
DCP1A	55802	hgsc.bcm.edu;ucsc.edu	37	3	53326738	53326738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	53326738	A	C	53326738	3	2	92	1	0	0	0	0	1	0	0	0	4300	214	8	5	1020	5	DCP1A	3	53326738	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	3031706	53326738	144695692	13	5942											
WDR5B	54554	hgsc.bcm.edu	37	3	122133767	122133767	+	Silent	SNP	T	T	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	122133767	T	C	122133767	2	2	92	1	0	0	0	0	0	0	0	1	17321	1838	64	3		3	WDR5B	3	122133767	Silent	SNP	T	TCGA-B0-4694-01A-01D-1361-10	68807029	122133767	75888663	14	5943											
ARMC8	25852	hgsc.bcm.edu;ucsc.edu	37	3	137963939	137963939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	137963939	G	A	137963939	3	1	92	1	0	0	0	0	1	0	0	0	957	1290	45	2	1052	2	ARMC8	3	137963939	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	15830172	137963939	60058491	15	5944											
IGSF10	285313	hgsc.bcm.edu	37	3	151164336	151164336	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	151164336	A	C	151164336	3	2	92	1	0	0	0	0	1	0	0	0	7604	449	16	5	4498	5	IGSF10	3	151164336	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	13200397	151164336	46858094	16	5945											
LRRC15	131578	hgsc.bcm.edu	37	3	194080112	194080112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	194080112	G	A	194080112	3	1	92	1	0	0	0	0	1	0	0	0	8977	1174	41	2	88	2	LRRC15	3	194080112	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	42915776	194080112	3942318	17	5946											
ANKRD56	0	hgsc.bcm.edu	37	4	77817362	77817362	+	Silent	SNP	T	T	C	rs2703131	bycluster;byfrequency;by1000genomes	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	77817362	T	C	77817362	2	2	92	1	0	0	0	0	0	0	0	1	682	1403	49	3		3	ANKRD56	4	77817362	Silent	SNP	T	TCGA-B0-4694-01A-01D-1361-10		77817362	113336914	18	5947											
GALNT7	51809	hgsc.bcm.edu	37	4	174219388	174219388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	174219388	A	G	174219388	3	3	92	1	0	0	0	0	1	0	0	0	6225	14	1	3	1110	3	GALNT7	4	174219388	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	96402026	174219388	16934888	19	5948											
DDX4	54514	hgsc.bcm.edu;ucsc.edu	37	5	55109576	55109576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	55109576	A	C	55109576	3	2	92	1	0	0	0	0	1	0	0	0	4362	14	1	5	1802	5	DDX4	5	55109576	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10		55109576	125805684	20	5949											
IL4	3565	hgsc.bcm.edu	37	5	132018257	132018257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	132018257	A	G	132018257	3	3	92	1	0	0	0	0	1	0	0	0	7703	14	1	3	454	3	IL4	5	132018257	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	76908681	132018257	48897003	21	5950											
TCERG1	10915	hgsc.bcm.edu	37	5	145862191	145862191	+	Silent	SNP	A	A	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	145862191	A	G	145862191	2	3	92	1	0	0	0	0	0	0	0	1	15697	69	3	3		3	TCERG1	5	145862191	Silent	SNP	A	TCGA-B0-4694-01A-01D-1361-10	13843934	145862191	35053069	22	5951											
NDST1	3340	hgsc.bcm.edu	37	5	149921139	149921139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	149921139	G	T	149921139	3	4	92	1	0	0	0	0	1	0	0	0	10262	1319	46	4	1787	4	NDST1	5	149921139	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	4058948	149921139	30994121	23	5952											
FAM65B	9750	hgsc.bcm.edu	37	6	24828489	24828489	+	Silent	SNP	C	C	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	24828489	C	T	24828489	2	4	92	1	0	0	0	0	0	0	0	1	5607	610	22	2		2	FAM65B	6	24828489	Silent	SNP	C	TCGA-B0-4694-01A-01D-1361-10		24828489	146286578	24	5953											
HIST1H2BD	3017	hgsc.bcm.edu	37	6	26158751	26158751	+	Silent	SNP	C	C	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	26158751	C	T	26158751	2	4	92	1	0	0	0	0	0	0	0	1	7150	639	23	1		1	HIST1H2BD	6	26158751	Silent	SNP	C	TCGA-B0-4694-01A-01D-1361-10	1330262	26158751	144956316	25	5954											
PRPH2	5961	hgsc.bcm.edu	37	6	42690020	42690020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	42690020	T	C	42690020	3	2	92	1	0	0	0	0	1	0	0	0	12587	1812	63	3	999	3	PRPH2	6	42690020	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10	16531269	42690020	128425047	26	5955											
GPR31	2853	hgsc.bcm.edu	37	6	167570628	167570628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	167570628	A	G	167570628	3	3	92	1	0	0	0	0	1	0	0	0	6694	14	1	3	270	3	GPR31	6	167570628	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	124880608	167570628	3544439	27	5956											
RABL5	64792	hgsc.bcm.edu	37	7	100959746	100959746	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	100959746	T	G	100959746	3	3	92	1	0	0	0	0	1	0	0	0	12986	1696	59	5	281	5	RABL5	7	100959746	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10		100959746	58178917	28	5957											
JHDM1D	80853	hgsc.bcm.edu	37	7	139826594	139826594	+	Missense_Mutation	SNP	A	A	G	rs182952796	by1000genomes	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	139826594	A	G	139826594	3	3	92	1	0	0	0	0	1	0	0	0	7955	449	16	3	2154	3	JHDM1D	7	139826594	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	38866848	139826594	19312069	29	5958											
RARRES2	5919	hgsc.bcm.edu	37	7	150037576	150037576	+	Silent	SNP	C	C	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	150037576	C	A	150037576	2	1	92	1	0	0	0	0	0	0	0	1	13069	755	27	4		4	RARRES2	7	150037576	Silent	SNP	C	TCGA-B0-4694-01A-01D-1361-10	10210982	150037576	9101087	30	5959											
ADAM18	8749	hgsc.bcm.edu	37	8	39537679	39537679	+	Silent	SNP	C	C	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	39537679	C	G	39537679	2	3	92	1	0	0	0	0	0	0	0	1	239	668	24	4		4	ADAM18	8	39537679	Silent	SNP	C	TCGA-B0-4694-01A-01D-1361-10		39537679	106826343	31	5960											
CHRNA6	8973	hgsc.bcm.edu;ucsc.edu	37	8	42611131	42611131	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	42611131	A	C	42611131	3	2	92	1	0	0	0	0	1	0	0	0	3389	72	3	5	281	5	CHRNA6	8	42611131	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	3073452	42611131	103752891	32	5961											
ZNF250	58500	hgsc.bcm.edu;ucsc.edu	37	8	146107413	146107413	+	Silent	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	146107413	G	A	146107413	2	1	92	1	0	0	0	0	0	0	0	1	17807	1103	39	1		1	ZNF250	8	146107413	Silent	SNP	G	TCGA-B0-4694-01A-01D-1361-10	103496282	146107413	256609	33	5962											
NOL6	65083	hgsc.bcm.edu	37	9	33463856	33463856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	33463856	C	T	33463856	3	4	92	1	0	0	0	0	1	0	0	0	10532	594	21	2	489	2	NOL6	9	33463856	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10		33463856	107749575	34	5963											
ASPN	54829	hgsc.bcm.edu;ucsc.edu	37	9	95233022	95233022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	95233022	T	C	95233022	3	2	92	1	0	0	0	0	1	0	0	0	1057	1493	52	3	850	3	ASPN	9	95233022	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10	61769166	95233022	45980409	35	5964											
WNK2	65268	hgsc.bcm.edu	37	9	96002138	96002138	+	Silent	SNP	C	C	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	96002138	C	T	96002138	2	4	92	1	0	0	0	0	0	0	0	1	17390	874	31	1		1	WNK2	9	96002138	Silent	SNP	C	TCGA-B0-4694-01A-01D-1361-10	769116	96002138	45211293	36	5965											
KIAA0368	23392	hgsc.bcm.edu;ucsc.edu	37	9	114133030	114133030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	114133030	C	T	114133030	3	4	92	1	0	0	0	0	1	0	0	0	8178	797	28	2	794	2	KIAA0368	9	114133030	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10	18130892	114133030	27080401	37	5966											
ZNF483	158399	hgsc.bcm.edu;ucsc.edu	37	9	114305082	114305082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	114305082	A	C	114305082	3	2	92	1	0	0	0	0	1	0	0	0	17948	333	12	5	1885	5	ZNF483	9	114305082	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	172052	114305082	26908349	38	5967											
SETX	23064	hgsc.bcm.edu;ucsc.edu	37	9	135203821	135203821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	135203821	C	T	135203821	3	4	92	1	0	0	0	0	1	0	0	0	14154	565	20	2	4937	2	SETX	9	135203821	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10	20898739	135203821	6009610	39	5968											
AKR1C1	1645	hgsc.bcm.edu;ucsc.edu	37	10	5009193	5009193	+	Silent	SNP	T	T	C	rs11548049	bycluster;byfrequency	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	5009193	T	C	5009193	2	2	92	1	0	0	0	0	0	0	0	1	469	1490	52	3		3	AKR1C1	10	5009193	Silent	SNP	T	TCGA-B0-4694-01A-01D-1361-10		5009193	130525554	40	5969											
TAF3	83860	hgsc.bcm.edu	37	10	8055709	8055709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	8055709	G	A	8055709	3	1	92	1	0	0	0	0	1	0	0	0	15537	1232	43	2	2606	2	TAF3	10	8055709	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	3046516	8055709	127479038	41	5970											
LRIT1	26103	hgsc.bcm.edu	37	10	85992243	85992243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	85992243	C	A	85992243	3	1	92	1	0	0	0	0	1	0	0	0	8954	623	22	4	563	4	LRIT1	10	85992243	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10	77936534	85992243	49542504	42	5971											
PTEN	5728	hgsc.bcm.edu	37	10	89692884	89692884	+	Missense_Mutation	SNP	A	A	T	rs121909222	alternate_allele	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	89692884	A	T	89692884	3	4	92	1	0	0	0	0	1	0	0	0	12748	159	6	5	386	5	PTEN	10	89692884	Missense_Mutation	SNP	A	TCGA-B0-4694-01A-01D-1361-10	3700641	89692884	45841863	43	5972											
BHLHE41	79365	hgsc.bcm.edu	37	12	26277067	26277067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	26277067	C	T	26277067	3	4	92	1	0	0	0	0	1	0	0	0	1424	913	32	2	1288	2	BHLHE41	12	26277067	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10		26277067	107574828	44	5973											
SLC4A8	9498	hgsc.bcm.edu	37	12	51868167	51868167	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	51868167	T	A	51868167	3	1	92	1	0	0	0	0	1	0	0	0	14672	1551	54	5	2004	5	SLC4A8	12	51868167	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10	25591100	51868167	81983728	45	5974											
ATF7	11016	hgsc.bcm.edu;ucsc.edu	37	12	53937186	53937186	+	Silent	SNP	C	C	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	53937186	C	G	53937186	2	3	92	1	0	0	0	0	0	0	0	1	1086	581	21	4		4	ATF7	12	53937186	Silent	SNP	C	TCGA-B0-4694-01A-01D-1361-10	2069019	53937186	79914709	46	5975											
KSR2	283455	hgsc.bcm.edu	37	12	118105409	118105409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	118105409	G	T	118105409	3	4	92	1	0	0	0	0	1	0	0	0	8589	962	34	4	1875	4	KSR2	12	118105409	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	64168223	118105409	15746486	47	5976											
CENPJ	55835	hgsc.bcm.edu;ucsc.edu	37	13	25457359	25457359	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	25457359	C	G	25457359	3	3	92	1	0	0	0	0	1	0	0	0	3236	565	20	4	47	4	CENPJ	13	25457359	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10		25457359	89712519	48	5977											
CENPJ	55835	hgsc.bcm.edu	37	13	25486101	25486101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	25486101	C	A	25486101	3	1	92	1	0	0	0	0	1	0	0	0	3236	623	22	4	3525	4	CENPJ	13	25486101	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10	28742	25486101	89683777	49	5978											
RNASE1	6035	hgsc.bcm.edu	37	14	21270037	21270037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	21270037	G	A	21270037	3	1	92	1	0	0	0	0	1	0	0	0	13412	1377	48	2	283	2	RNASE1	14	21270037	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10		21270037	86079503	50	5979											
SEC23A	10484	hgsc.bcm.edu;ucsc.edu	37	14	39555078	39555078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	39555078	T	C	39555078	3	2	92	1	0	0	0	0	1	0	0	0	14004	1493	52	3	1637	3	SEC23A	14	39555078	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10	18285041	39555078	67794462	51	5980											
KTN1	3895	hgsc.bcm.edu;ucsc.edu	37	14	56137506	56137506	+	Silent	SNP	T	T	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	56137506	T	A	56137506	2	1	92	1	0	0	0	0	0	0	0	1	8592	1596	56	5		5	KTN1	14	56137506	Silent	SNP	T	TCGA-B0-4694-01A-01D-1361-10	16582428	56137506	51212034	52	5981											
LARP6	55323	hgsc.bcm.edu	37	15	71125110	71125110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	71125110	C	G	71125110	3	3	92	1	0	0	0	0	1	0	0	0	8639	565	20	4	722	4	LARP6	15	71125110	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10		71125110	31406282	53	5982											
SGK269	0	hgsc.bcm.edu	37	15	77406808	77406808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	77406808	C	A	77406808	3	1	92	1	0	0	0	0	1	0	0	0	14224	710	25	4	313	4	SGK269	15	77406808	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10	6281698	77406808	25124584	54	5983											
UQCRC2	7385	hgsc.bcm.edu	37	16	21982911	21982911	+	Silent	SNP	T	T	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	21982911	T	C	21982911	2	2	92	1	0	0	0	0	0	0	0	1	17032	1838	64	3		3	UQCRC2	16	21982911	Silent	SNP	T	TCGA-B0-4694-01A-01D-1361-10		21982911	68371842	55	5984											
MMP2	4313	hgsc.bcm.edu;ucsc.edu	37	16	55519658	55519658	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	55519658	G	C	55519658	3	2	92	1	0	0	0	0	1	0	0	0	9665	991	35	4	826	4	MMP2	16	55519658	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	33536747	55519658	34835095	56	5985											
SLC12A3	6559	hgsc.bcm.edu;ucsc.edu	37	16	56938335	56938335	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	56938335	T	G	56938335	3	3	92	1	0	0	0	0	1	0	0	0	14397	1493	52	5	3010	5	SLC12A3	16	56938335	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10	1418677	56938335	33416418	57	5986											
FAM57A	79850	hgsc.bcm.edu;ucsc.edu	37	17	641269	641269	+	Silent	SNP	C	C	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	641269	C	A	641269	2	1	92	1	0	0	0	0	0	0	0	1	5595	842	30	4		4	FAM57A	17	641269	Silent	SNP	C	TCGA-B0-4694-01A-01D-1361-10		641269	80553941	58	5987											
ZMYND15	84225	hgsc.bcm.edu	37	17	4645276	4645276	+	Silent	SNP	T	T	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	4645276	T	C	4645276	2	2	92	1	0	0	0	0	0	0	0	1	17720	1654	58	3		3	ZMYND15	17	4645276	Silent	SNP	T	TCGA-B0-4694-01A-01D-1361-10	4004007	4645276	76549934	59	5988											
NF1	4763	hgsc.bcm.edu;ucsc.edu	37	17	29665755	29665755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	29665755	T	C	29665755	3	2	92	1	0	0	0	0	1	0	0	0	10363	1754	61	3	7096	3	NF1	17	29665755	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10	25020479	29665755	51529455	60	5989											
NLE1	54475	hgsc.bcm.edu	37	17	33463419	33463419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	33463419	G	C	33463419	3	2	92	1	0	0	0	0	1	0	0	0	10467	971	34	4	555	4	NLE1	17	33463419	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	3797664	33463419	47731791	61	5990											
VPS25	84313	hgsc.bcm.edu	37	17	40925801	40925801	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	40925801	C	G	40925801	3	3	92	1	0	0	0	0	1	0	0	0	17208	893	31	4	110	4	VPS25	17	40925801	Missense_Mutation	SNP	C	TCGA-B0-4694-01A-01D-1361-10	7462382	40925801	40269409	62	5991											
GPATCH8	23131	hgsc.bcm.edu;ucsc.edu	37	17	42475564	42475564	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	42475564	G	C	42475564	3	2	92	1	0	0	0	0	1	0	0	0	6601	1377	48	4	631	4	GPATCH8	17	42475564	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	1549763	42475564	38719646	63	5992											
ACE	1636	hgsc.bcm.edu;ucsc.edu	37	17	61557828	61557828	+	Silent	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	61557828	G	A	61557828	2	1	92	1	0	0	0	0	0	0	0	1	136	1306	46	2		2	ACE	17	61557828	Silent	SNP	G	TCGA-B0-4694-01A-01D-1361-10	19082264	61557828	19637382	64	5993											
SLC16A6	9120	hgsc.bcm.edu;ucsc.edu	37	17	66268860	66268860	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	66268860	T	A	66268860	3	1	92	1	0	0	0	0	1	0	0	0	14425	1812	63	5	1158	5	SLC16A6	17	66268860	Missense_Mutation	SNP	T	TCGA-B0-4694-01A-01D-1361-10	4711032	66268860	14926350	65	5994											
LAMA1	284217	hgsc.bcm.edu;ucsc.edu	37	18	7008502	7008502	+	Silent	SNP	C	C	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	7008502	C	T	7008502	2	4	92	1	0	0	0	0	0	0	0	1	8612	581	21	2		2	LAMA1	18	7008502	Silent	SNP	C	TCGA-B0-4694-01A-01D-1361-10		7008502	71068746	66	5995											
C18orf55	0	hgsc.bcm.edu	37	18	71825486	71825486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	71825486	G	A	71825486	3	1	92	1	0	0	0	0	1	0	0	0	1907	1174	41	2	635	2	C18orf55	18	71825486	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	64816984	71825486	6251762	67	5996											
IL12RB1	3594	hgsc.bcm.edu	37	19	18174754	18174754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	18174754	G	A	18174754	3	1	92	1	0	0	0	0	1	0	0	0	7633	1145	40	1	458	1	IL12RB1	19	18174754	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10		18174754	40954229	68	5997											
WDR62	284403	hgsc.bcm.edu	37	19	36575625	36575625	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	36575625	G	T	36575625	4	4	92	1	0	0	0	0	0	1	0	0	17325	1175	41	4	1667	4	WDR62	19	36575625	Nonsense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	18400871	36575625	22553358	69	5998											
ZNF787	126208	hgsc.bcm.edu;ucsc.edu	37	19	56614566	56614566	+	Silent	SNP	G	G	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	56614566	G	C	56614566	2	2	92	1	0	0	0	0	0	0	0	1	18171	987	35	4		4	ZNF787	19	56614566	Silent	SNP	G	TCGA-B0-4694-01A-01D-1361-10	20038941	56614566	2514417	70	5999											
DDX27	55661	hgsc.bcm.edu	37	20	47835898	47835898	+	Silent	SNP	A	A	G	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	G	47835898	A	G	47835898	2	3	92	1	0	0	0	0	0	0	0	1	4356	378	14	3		3	DDX27	20	47835898	Silent	SNP	A	TCGA-B0-4694-01A-01D-1361-10		47835898	15189622	71	6000											
SLC7A4	6545	hgsc.bcm.edu;ucsc.edu	37	22	21383473	21383473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	T	21383473	G	T	21383473	3	4	92	1	0	0	0	0	1	0	0	0	14712	1252	44	4	132	4	SLC7A4	22	21383473	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10		21383473	29921093	72	6001											
PLA2G6	8398	hgsc.bcm.edu;ucsc.edu	37	22	38509556	38509556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	38509556	G	A	38509556	3	1	92	1	0	0	0	0	1	0	0	0	12015	1232	43	2	292	2	PLA2G6	22	38509556	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	17126083	38509556	12795010	73	6002											
POLDIP3	84271	hgsc.bcm.edu;ucsc.edu	37	22	42992326	42992326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	42992326	G	C	42992326	3	2	92	1	0	0	0	0	1	0	0	0	12202	942	33	4	606	4	POLDIP3	22	42992326	Missense_Mutation	SNP	G	TCGA-B0-4694-01A-01D-1361-10	4482770	42992326	8312240	74	6003											
FRMPD4	9758	hgsc.bcm.edu;ucsc.edu	37	X	12736245	12736245	+	Silent	SNP	G	G	C	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	C	12736245	G	C	12736245	2	2	92	1	0	0	0	0	0	0	0	1	6066	1161	41	4		4	FRMPD4	23	12736245	Silent	SNP	G	TCGA-B0-4694-01A-01D-1361-10		12736245	142534315	75	6004											
KDM5C	8242	ucsc.edu	37	X	53240028	53240031	+	Frame_Shift_Del	DEL	GGTA	GGTA	-	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	GGTA	GGTA	GGTA	-	GGTA	GGTA	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	-	53240031	GGTA	-	53240028	7	5	92	1	0	1	0	1	0	0	0	0	8142	1335	47	0	3431	0	KDM5C	23	53240028	Frame_Shift_Del	DEL	GGTA	TCGA-B0-4694-01A-01D-1361-10	40503783	53240028	102030532	76	6005											
L1CAM	3897	hgsc.bcm.edu	37	X	153131183	153131183	+	Silent	SNP	G	G	A	novel		TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	41bb1730-882b-4f39-9152-fbb07c030941	5aa17238-3462-4d47-b59d-459418de9e98	A	153131183	G	A	153131183	2	1	92	1	0	0	0	0	0	0	0	1	8595	1277	45	2		2	L1CAM	23	153131183	Silent	SNP	G	TCGA-B0-4694-01A-01D-1361-10	99891155	153131183	2139377	77	6006											
NPHS2	7827	hgsc.bcm.edu	37	1	179521759	179521759	+	Silent	SNP	C	C	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	179521759	C	A	179521759	2	1	93	1	0	0	0	0	0	0	0	1	10590	755	27	4		4	NPHS2	1	179521759	Silent	SNP	C	TCGA-B0-4697-01A-01D-1361-10		179521759	69728862	1	6007											
C1orf65	164127	hgsc.bcm.edu	37	1	223568115	223568115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	223568115	G	T	223568115	3	4	93	1	0	0	0	0	1	0	0	0	2057	1116	39	4	1300	4	C1orf65	1	223568115	Missense_Mutation	SNP	G	TCGA-B0-4697-01A-01D-1361-10	44046356	223568115	25682506	2	6008											
RHOB	388	hgsc.bcm.edu	37	2	20647607	20647607	+	Silent	SNP	C	C	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	20647607	C	A	20647607	2	1	93	1	0	0	0	0	0	0	0	1	13345	842	30	4		4	RHOB	2	20647607	Silent	SNP	C	TCGA-B0-4697-01A-01D-1361-10		20647607	222551766	3	6009											
SPTBN1	6711	hgsc.bcm.edu	37	2	54753688	54753688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	54753688	A	T	54753688	3	4	93	1	0	0	0	0	1	0	0	0	15131	217	8	5	135	5	SPTBN1	2	54753688	Missense_Mutation	SNP	A	TCGA-B0-4697-01A-01D-1361-10	34106081	54753688	188445685	4	6010											
SULT1C2	6819	hgsc.bcm.edu	37	2	108910186	108910186	+	Silent	SNP	G	G	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	108910186	G	T	108910186	2	4	93	1	0	0	0	0	0	0	0	1	15389	1306	46	4		4	SULT1C2	2	108910186	Silent	SNP	G	TCGA-B0-4697-01A-01D-1361-10	54156498	108910186	134289187	5	6011											
PRKRA	8575	hgsc.bcm.edu	37	2	179307992	179307992	+	Splice_Site	SNP	A	A	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	179307992	A	T	179307992	5	4	93	1	0	0	0	0	0	0	1	0	12534	405	14	5	441	5	PRKRA	2	179307992	Splice_Site	SNP	A	TCGA-B0-4697-01A-01D-1361-10	70397806	179307992	63891381	6	6012											
ZNF385D	79750	hgsc.bcm.edu	37	3	21706406	21706406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	21706406	G	T	21706406	3	4	93	1	0	0	0	0	1	0	0	0	17890	1319	46	4	1078	4	ZNF385D	3	21706406	Missense_Mutation	SNP	G	TCGA-B0-4697-01A-01D-1361-10		21706406	176316024	7	6013											
MST1	4485	hgsc.bcm.edu	37	3	49725086	49725086	+	Silent	SNP	G	G	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	49725086	G	A	49725086	2	1	93	1	0	0	0	0	0	0	0	1	9897	1136	40	1		1	MST1	3	49725086	Silent	SNP	G	TCGA-B0-4697-01A-01D-1361-10	28018680	49725086	148297344	8	6014											
PRKCD	5580	hgsc.bcm.edu	37	3	53213676	53213676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	53213676	C	A	53213676	3	1	93	1	0	0	0	0	1	0	0	0	12519	768	27	4	205	4	PRKCD	3	53213676	Missense_Mutation	SNP	C	TCGA-B0-4697-01A-01D-1361-10	3488590	53213676	144808754	9	6015											
SLC15A2	6565	hgsc.bcm.edu	37	3	121613338	121613338	+	Silent	SNP	G	G	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	121613338	G	A	121613338	2	1	93	1	0	0	0	0	0	0	0	1	14412	933	33	2		2	SLC15A2	3	121613338	Silent	SNP	G	TCGA-B0-4697-01A-01D-1361-10	68399662	121613338	76409092	10	6016											
SH3TC1	54436	hgsc.bcm.edu	37	4	8229881	8229881	+	Silent	SNP	A	A	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	8229881	A	T	8229881	2	4	93	1	0	0	0	0	0	0	0	1	14274	291	11	5		5	SH3TC1	4	8229881	Silent	SNP	A	TCGA-B0-4697-01A-01D-1361-10		8229881	182924395	11	6017											
ANXA6	309	hgsc.bcm.edu	37	5	150514009	150514009	+	Silent	SNP	G	G	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	150514009	G	A	150514009	2	1	93	1	0	0	0	0	0	0	0	1	722	1252	44	2		2	ANXA6	5	150514009	Silent	SNP	G	TCGA-B0-4697-01A-01D-1361-10		150514009	30401251	12	6018											
TSPAN17	26262	hgsc.bcm.edu	37	5	176084585	176084585	+	Silent	SNP	G	G	A	rs150851795		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	176084585	G	A	176084585	2	1	93	1	0	0	0	0	0	0	0	1	16653	1103	39	1		1	TSPAN17	5	176084585	Silent	SNP	G	TCGA-B0-4697-01A-01D-1361-10	25570576	176084585	4830675	13	6019											
CUL9	23113	hgsc.bcm.edu	37	6	43174214	43174214	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	G	43174214	T	G	43174214	3	3	93	1	0	0	0	0	1	0	0	0	4063	1461	51	5	5276	5	CUL9	6	43174214	Missense_Mutation	SNP	T	TCGA-B0-4697-01A-01D-1361-10		43174214	127940853	14	6020											
ELN	2006	hgsc.bcm.edu	37	7	73471995	73471995	+	Silent	SNP	T	T	C	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	C	73471995	T	C	73471995	2	2	93	1	0	0	0	0	0	0	0	1	5073	1567	55	3		3	ELN	7	73471995	Silent	SNP	T	TCGA-B0-4697-01A-01D-1361-10		73471995	85666668	15	6021											
GRM8	2918	hgsc.bcm.edu	37	7	126883113	126883113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	126883113	C	A	126883113	3	1	93	1	0	0	0	0	1	0	0	0	6810	623	22	4	2670	4	GRM8	7	126883113	Missense_Mutation	SNP	C	TCGA-B0-4697-01A-01D-1361-10	53411118	126883113	32255550	16	6022											
SH2D4A	63898	hgsc.bcm.edu	37	8	19252099	19252099	+	Silent	SNP	C	C	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	19252099	C	T	19252099	2	4	93	1	0	0	0	0	0	0	0	1	14248	900	32	2		2	SH2D4A	8	19252099	Silent	SNP	C	TCGA-B0-4697-01A-01D-1361-10		19252099	127111923	17	6023											
VCPIP1	80124	hgsc.bcm.edu	37	8	67576661	67576661	+	Silent	SNP	T	T	G	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	G	67576661	T	G	67576661	2	3	93	1	0	0	0	0	0	0	0	1	17153	1588	55	5		5	VCPIP1	8	67576661	Silent	SNP	T	TCGA-B0-4697-01A-01D-1361-10	48324562	67576661	78787361	18	6024											
PABPC1	26986	hgsc.bcm.edu	37	8	101725374	101725374	+	Missense_Mutation	SNP	T	T	C	rs72681440	bycluster	TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	C	101725374	T	C	101725374	3	2	93	1	0	0	0	0	1	0	0	0	11370	1609	56	3	1271	3	PABPC1	8	101725374	Missense_Mutation	SNP	T	TCGA-B0-4697-01A-01D-1361-10	34148713	101725374	44638648	19	6025											
BTRC	8945	hgsc.bcm.edu;ucsc.edu	37	10	103294568	103294568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	G	103294568	T	G	103294568	3	3	93	1	0	0	0	0	1	0	0	0	1571	1742	61	5	1286	5	BTRC	10	103294568	Missense_Mutation	SNP	T	TCGA-B0-4697-01A-01D-1361-10		103294568	32240179	20	6026											
KRTAP5-1	387264	hgsc.bcm.edu	37	11	1606138	1606138	+	Silent	SNP	T	T	G	rs80025267	bycluster;byfrequency;by1000genomes	TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	G	1606138	T	G	1606138	2	3	93	1	0	0	0	0	0	0	0	1	8565	1422	50	5		5	KRTAP5-1	11	1606138	Silent	SNP	T	TCGA-B0-4697-01A-01D-1361-10		1606138	133400378	21	6027											
DNHD1	144132	hgsc.bcm.edu	37	11	6578588	6578588	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	C	6578588	A	C	6578588	3	2	93	1	0	0	0	0	1	0	0	0	4670	159	6	5	8162	5	DNHD1	11	6578588	Missense_Mutation	SNP	A	TCGA-B0-4697-01A-01D-1361-10	4972450	6578588	128427928	22	6028											
PITPNM1	9600	hgsc.bcm.edu	37	11	67269466	67269466	+	Silent	SNP	T	T	C	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	C	67269466	T	C	67269466	2	2	93	1	0	0	0	0	0	0	0	1	11957	1538	54	3		3	PITPNM1	11	67269466	Silent	SNP	T	TCGA-B0-4697-01A-01D-1361-10	60690878	67269466	67737050	23	6029											
ACAD8	27034	hgsc.bcm.edu	37	11	134131683	134131683	+	Silent	SNP	C	C	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	134131683	C	T	134131683	2	4	93	1	0	0	0	0	0	0	0	1	110	796	28	2		2	ACAD8	11	134131683	Silent	SNP	C	TCGA-B0-4697-01A-01D-1361-10	66862217	134131683	874833	24	6030											
GXYLT1	283464	hgsc.bcm.edu	37	12	42491287	42491287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	C	42491287	T	C	42491287	3	2	93	1	0	0	0	0	1	0	0	0	6910	1435	50	3	212	3	GXYLT1	12	42491287	Missense_Mutation	SNP	T	TCGA-B0-4697-01A-01D-1361-10		42491287	91360608	25	6031											
USP15	9958	hgsc.bcm.edu	37	12	62777762	62777762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	62777762	G	T	62777762	3	4	93	1	0	0	0	0	1	0	0	0	17058	942	33	4	1178	4	USP15	12	62777762	Missense_Mutation	SNP	G	TCGA-B0-4697-01A-01D-1361-10	20286475	62777762	71074133	26	6032											
ZFYVE26	23503	hgsc.bcm.edu	37	14	68251809	68251809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	G	68251809	C	G	68251809	3	3	93	1	0	0	0	0	1	0	0	0	17680	710	25	4	4225	4	ZFYVE26	14	68251809	Missense_Mutation	SNP	C	TCGA-B0-4697-01A-01D-1361-10		68251809	39097731	27	6033											
CCDC33	80125	hgsc.bcm.edu;ucsc.edu	37	15	74625025	74625025	+	Missense_Mutation	SNP	C	C	T	rs146131430		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	74625025	C	T	74625025	3	4	93	1	0	0	0	0	1	0	0	0	2808	623	22	2	1912	2	CCDC33	15	74625025	Missense_Mutation	SNP	C	TCGA-B0-4697-01A-01D-1361-10		74625025	27906367	28	6034											
SIAH1	6477	hgsc.bcm.edu	37	16	48396058	48396058	+	Silent	SNP	T	T	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	48396058	T	A	48396058	2	1	93	1	0	0	0	0	0	0	0	1	14312	1625	57	5		5	SIAH1	16	48396058	Silent	SNP	T	TCGA-B0-4697-01A-01D-1361-10		48396058	41958695	29	6035											
TOM1L2	146691	hgsc.bcm.edu	37	17	17772713	17772713	+	Silent	SNP	G	G	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	17772713	G	A	17772713	2	1	93	1	0	0	0	0	0	0	0	1	16365	1277	45	2		2	TOM1L2	17	17772713	Silent	SNP	G	TCGA-B0-4697-01A-01D-1361-10		17772713	63422497	30	6036											
DHX40	79665	hgsc.bcm.edu	37	17	57676168	57676168	+	Silent	SNP	T	T	C	rs139117700	byfrequency	TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	C	57676168	T	C	57676168	2	2	93	1	0	0	0	0	0	0	0	1	4514	1461	51	3		3	DHX40	17	57676168	Silent	SNP	T	TCGA-B0-4697-01A-01D-1361-10	39903455	57676168	23519042	31	6037											
CHMP1B	57132	hgsc.bcm.edu	37	18	11851896	11851896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	11851896	C	T	11851896	3	4	93	1	0	0	0	0	1	0	0	0	3355	536	19	1	388	1	CHMP1B	18	11851896	Missense_Mutation	SNP	C	TCGA-B0-4697-01A-01D-1361-10		11851896	66225352	32	6038											
MOCOS	55034	hgsc.bcm.edu	37	18	33848526	33848526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	C	33848526	T	C	33848526	3	2	93	1	0	0	0	0	1	0	0	0	9696	1435	50	3	2603	3	MOCOS	18	33848526	Missense_Mutation	SNP	T	TCGA-B0-4697-01A-01D-1361-10	21996630	33848526	44228722	33	6039											
STK11	6794	hgsc.bcm.edu	37	19	1220429	1220429	+	Silent	SNP	C	C	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	1220429	C	T	1220429	2	4	93	1	0	0	0	0	0	0	0	1	15299	477	17	2		2	STK11	19	1220429	Silent	SNP	C	TCGA-B0-4697-01A-01D-1361-10		1220429	57908554	34	6040											
ANKRD24	170961	hgsc.bcm.edu	37	19	4200138	4200138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	4200138	G	A	4200138	3	1	93	1	0	0	0	0	1	0	0	0	653	1348	47	2	327	2	ANKRD24	19	4200138	Missense_Mutation	SNP	G	TCGA-B0-4697-01A-01D-1361-10	2979709	4200138	54928845	35	6041											
KLK10	5655	hgsc.bcm.edu	37	19	51519365	51519365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	51519365	C	A	51519365	3	1	93	1	0	0	0	0	1	0	0	0	8405	855	30	4	525	4	KLK10	19	51519365	Missense_Mutation	SNP	C	TCGA-B0-4697-01A-01D-1361-10	47319227	51519365	7609618	36	6042											
ZNF578	147660	hgsc.bcm.edu	37	19	53014787	53014787	+	Missense_Mutation	SNP	A	A	G	rs35356792	bycluster;byfrequency;by1000genomes	TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	G	53014787	A	G	53014787	3	3	93	1	0	0	0	0	1	0	0	0	18022	43	2	3	1163	3	ZNF578	19	53014787	Missense_Mutation	SNP	A	TCGA-B0-4697-01A-01D-1361-10	1495422	53014787	6114196	37	6043											
DDX27	55661	hgsc.bcm.edu;ucsc.edu	37	20	47835943	47835943	+	Silent	SNP	A	A	G	rs139847823	alternate_allele	TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	G	47835943	A	G	47835943	2	3	93	1	0	0	0	0	0	0	0	1	4356	262	10	3		3	DDX27	20	47835943	Silent	SNP	A	TCGA-B0-4697-01A-01D-1361-10		47835943	15189577	38	6044											
TFF2	7032	hgsc.bcm.edu	37	21	43771056	43771056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	43771056	C	A	43771056	3	1	93	1	0	0	0	0	1	0	0	0	15816	884	31	4	394	4	TFF2	21	43771056	Missense_Mutation	SNP	C	TCGA-B0-4697-01A-01D-1361-10		43771056	4358839	39	6045											
TAB1	10454	hgsc.bcm.edu	37	22	39826038	39826038	+	Silent	SNP	C	C	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	39826038	C	A	39826038	2	1	93	1	0	0	0	0	0	0	0	1	15507	610	22	4		4	TAB1	22	39826038	Silent	SNP	C	TCGA-B0-4697-01A-01D-1361-10		39826038	11478528	40	6046											
ARAF	369	hgsc.bcm.edu	37	X	47428171	47428171	+	Silent	SNP	A	A	T	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	T	47428171	A	T	47428171	2	4	93	1	0	0	0	0	0	0	0	1	837	320	12	5		5	ARAF	23	47428171	Silent	SNP	A	TCGA-B0-4697-01A-01D-1361-10		47428171	107842389	41	6047											
CFP	5199	hgsc.bcm.edu	37	X	47489070	47489070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4697-01A-01D-1361-10	TCGA-B0-4697-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ea00776-e949-4f43-a9d7-5c722cc5afaf	c6fb9835-49b2-4762-b302-f8f7e050f43c	A	47489070	G	A	47489070	3	1	93	1	0	0	0	0	1	0	0	0	3295	1294	45	2	1361	2	CFP	23	47489070	Missense_Mutation	SNP	G	TCGA-B0-4697-01A-01D-1361-10	60899	47489070	107781490	42	6048											
AHDC1	27245	broad.mit.edu	37	1	27874970	27874970	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	27874970	T	T	27874970	4	4	94	1	0	0	0	0	0	1	0	0	412	856	30	2	1158	2	AHDC1	1	27874970	Nonsense_Mutation	SNP	C	TCGA-B0-4700-01A-02D-1534-10		27874970	221375651	1	6049											
GPR148	344561	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	131486857	131486857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	131486857	C	T	131486857	3	4	94	1	0	0	0	0	1	0	0	0	6660	739	26	2	135	2	GPR148	2	131486857	Missense_Mutation	SNP	C	TCGA-B0-4700-01A-02D-1534-10		131486857	111712516	2	6050											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188197	10188197	+	Splice_Site	SNP	G	G	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	10188197	G	T	10188197	5	4	94	1	0	0	0	0	0	0	1	0	17174	1014	35	4	346	4	VHL	3	10188197	Splice_Site	SNP	G	TCGA-B0-4700-01A-02D-1534-10		10188197	187834233	3	6051											
STAG1	10274	broad.mit.edu;ucsc.edu	37	3	136062774	136062774	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	A	136062774	A	A	136062774	4	1	94	1	0	0	0	0	0	1	0	0	15254	1386	48	2	450	2	STAG1	3	136062774	Nonsense_Mutation	SNP	G	TCGA-B0-4700-01A-02D-1534-10	125874577	136062774	61959656	4	6052											
MYO10	4651	broad.mit.edu	37	5	16675008	16675008	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	16675008	T	T	16675008	3	4	94	1	0	0	0	0	1	0	0	0	10069	991	35	4	1286	4	MYO10	5	16675008	Missense_Mutation	SNP	G	TCGA-B0-4700-01A-02D-1534-10		16675008	164240252	5	6053											
FAM153A	285596	broad.mit.edu;hgsc.bcm.edu	37	5	177166139	177166139	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	A	177166139	C	A	177166139	5	1	94	1	0	0	0	0	0	0	1	0	5464	695	24	4	674	4	FAM153A	5	177166139	Splice_Site	SNP	C	TCGA-B0-4700-01A-02D-1534-10	160491131	177166139	3749121	6	6054											
TAAR5	9038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	132910004	132910004	+	Silent	SNP	G	G	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	132910004	G	T	132910004	2	4	94	1	0	0	0	0	0	0	0	1	15503	1045	37	4		4	TAAR5	6	132910004	Silent	SNP	G	TCGA-B0-4700-01A-02D-1534-10		132910004	38205063	7	6055											
OR2F2	135948	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	143633180	143633180	+	Silent	SNP	G	G	A	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	A	143633180	G	A	143633180	2	1	94	1	0	0	0	0	0	0	0	1	11004	1277	45	2		2	OR2F2	7	143633180	Silent	SNP	G	TCGA-B0-4700-01A-02D-1534-10		143633180	15505483	8	6056											
OR13C8	138802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	107332250	107332250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	107332250	G	T	107332250	3	4	94	1	0	0	0	0	1	0	0	0	10945	1377	48	4	804	4	OR13C8	9	107332250	Missense_Mutation	SNP	G	TCGA-B0-4700-01A-02D-1534-10		107332250	33881181	9	6057											
OR51L1	119682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5020987	5020987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	A	5020987	G	A	5020987	3	1	94	1	0	0	0	0	1	0	0	0	11109	1348	47	2	777	2	OR51L1	11	5020987	Missense_Mutation	SNP	G	TCGA-B0-4700-01A-02D-1534-10		5020987	129985529	10	6058											
OR52E8	390079	broad.mit.edu;hgsc.bcm.edu	37	11	5878479	5878479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	5878479	C	T	5878479	3	4	94	1	0	0	0	0	1	0	0	0	11125	681	24	2	501	2	OR52E8	11	5878479	Missense_Mutation	SNP	C	TCGA-B0-4700-01A-02D-1534-10	857492	5878479	129128037	11	6059											
WNT5B	81029	broad.mit.edu	37	12	1755046	1755046	+	Silent	SNP	C	T	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	1755046	T	T	1755046	2	4	94	1	0	0	0	0	0	0	0	1	17404	639	23	1		1	WNT5B	12	1755046	Silent	SNP	C	TCGA-B0-4700-01A-02D-1534-10		1755046	132096849	12	6060											
BICD1	636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32490734	32490734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	A	32490734	G	A	32490734	3	1	94	1	0	0	0	0	1	0	0	0	1428	1348	47	2	2580	2	BICD1	12	32490734	Missense_Mutation	SNP	G	TCGA-B0-4700-01A-02D-1534-10	30735688	32490734	101361161	13	6061											
AMN	81693	broad.mit.edu	37	14	103396005	103396005	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	-	103396005	-	-	103396005	7	5	94	1	0	1	0	1	0	0	0	0	580	1310	46	0	804	0	AMN	14	103396005	Frame_Shift_Del	DEL	G	TCGA-B0-4700-01A-02D-1534-10		103396005	3953535	14	6062											
IL4R	3566	broad.mit.edu;hgsc.bcm.edu	37	16	27367167	27367167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	A	27367167	G	A	27367167	3	1	94	1	0	0	0	0	1	0	0	0	7705	1145	40	1	749	1	IL4R	16	27367167	Missense_Mutation	SNP	G	TCGA-B0-4700-01A-02D-1534-10		27367167	62987586	15	6063											
SULT1A2	6799	broad.mit.edu;hgsc.bcm.edu	37	16	28607132	28607132	+	Silent	SNP	G	G	A	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	A	28607132	G	A	28607132	2	1	94	1	0	0	0	0	0	0	0	1	15385	1252	44	2		2	SULT1A2	16	28607132	Silent	SNP	G	TCGA-B0-4700-01A-02D-1534-10	1239965	28607132	61747621	16	6064											
DAZAP1	26528	hgsc.bcm.edu	37	19	1432568	1432569	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	C	1432569	-	C	1432568	7	5	94	1	0	1	1	0	0	0	0	0	4246	1770	62	0	969	0	DAZAP1	19	1432568	Frame_Shift_Ins	INS	-	TCGA-B0-4700-01A-02D-1534-10		1432568	57696415	17	6065											
ETHE1	23474	hgsc.bcm.edu	37	19	44030464	44030465	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	G	44030465	-	G	44030464	7	5	94	1	0	1	1	0	0	0	0	0	5274	639	23	0	520	0	ETHE1	19	44030464	Frame_Shift_Ins	INS	-	TCGA-B0-4700-01A-02D-1534-10	42597896	44030464	15098519	18	6066											
TRPC4AP	26133	broad.mit.edu;ucsc.edu	37	20	33596526	33596526	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	G	33596526	G	G	33596526	3	3	94	1	0	0	0	0	1	0	0	0	16593	622	22	4	885	4	TRPC4AP	20	33596526	Missense_Mutation	SNP	C	TCGA-B0-4700-01A-02D-1534-10		33596526	29428994	19	6067											
MOCS3	27304	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	49576093	49576093	+	Silent	SNP	C	C	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	49576093	C	T	49576093	2	4	94	1	0	0	0	0	0	0	0	1	9699	564	20	2		2	MOCS3	20	49576093	Silent	SNP	C	TCGA-B0-4700-01A-02D-1534-10	15979567	49576093	13449427	20	6068											
RAB22A	57403	broad.mit.edu	37	20	56886167	56886167	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	A	56886167	A	A	56886167	3	1	94	1	0	0	0	0	1	0	0	0	12922	506	18	4	111	4	RAB22A	20	56886167	Missense_Mutation	SNP	C	TCGA-B0-4700-01A-02D-1534-10	7310074	56886167	6139353	21	6069											
CACNA1F	778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	49072841	49072841	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	49072841	C	T	49072841	5	4	94	1	0	0	0	0	0	0	1	0	2545	550	19	1	2751	1	CACNA1F	23	49072841	Splice_Site	SNP	C	TCGA-B0-4700-01A-02D-1534-10		49072841	106197719	22	6070											
TAF7L	54457	hgsc.bcm.edu	37	X	100531461	100531461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	C	100531461	A	C	100531461	3	2	94	1	0	0	0	0	1	0	0	0	15545	214	8	5	399	5	TAF7L	23	100531461	Missense_Mutation	SNP	A	TCGA-B0-4700-01A-02D-1534-10	51458620	100531461	54739099	23	6071											
STAG2	10735	broad.mit.edu	37	X	123191777	123191777	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	G	123191777	G	G	123191777	3	3	94	1	0	0	0	0	1	0	0	0	15255	855	30	4	1416	4	STAG2	23	123191777	Missense_Mutation	SNP	C	TCGA-B0-4700-01A-02D-1534-10	22660316	123191777	32078783	24	6072											
FMR1	2332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	147014114	147014114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	T	147014114	G	T	147014114	3	4	94	1	0	0	0	0	1	0	0	0	5967	1014	35	4	831	4	FMR1	23	147014114	Missense_Mutation	SNP	G	TCGA-B0-4700-01A-02D-1534-10	23822337	147014114	8256446	25	6073											
MECP2	4204	broad.mit.edu;ucsc.edu	37	X	153296886	153296886	+	Silent	SNP	G	C	C	rs61748385		TCGA-B0-4700-01A-02D-1534-10	TCGA-B0-4700-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	32cb433f-359c-44c3-b2df-d2a64df90175	19aa82fd-3e4f-4313-bd96-53da79284a94	C	153296886	C	C	153296886	2	2	94	1	0	0	0	0	0	0	0	1	9430	987	35	4		4	MECP2	23	153296886	Silent	SNP	G	TCGA-B0-4700-01A-02D-1534-10	6282772	153296886	1973674	26	6074											
KCNAB2	8514	hgsc.bcm.edu	37	1	6101899	6101899	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	6101899	A	C	6101899	3	2	95	1	0	0	0	0	1	0	0	0	8017	449	16	5	92	5	KCNAB2	1	6101899	Missense_Mutation	SNP	A	TCGA-B0-4703-01A-01D-1361-10		6101899	243148722	1	6075											
GJA4	2701	hgsc.bcm.edu	37	1	35259857	35259857	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	35259857	C	T	35259857	4	4	95	1	0	0	0	0	0	1	0	0	6410	595	21	2	45	2	GJA4	1	35259857	Nonsense_Mutation	SNP	C	TCGA-B0-4703-01A-01D-1361-10	29157958	35259857	213990764	2	6076											
MCOLN3	55283	hgsc.bcm.edu	37	1	85494842	85494842	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	85494842	A	T	85494842	4	4	95	1	0	0	0	0	0	1	0	0	9404	372	13	5	910	5	MCOLN3	1	85494842	Nonsense_Mutation	SNP	A	TCGA-B0-4703-01A-01D-1361-10	50234985	85494842	163755779	3	6077											
GSTM1	2944	hgsc.bcm.edu	37	1	110233138	110233138	+	Missense_Mutation	SNP	G	G	C	rs74837985	by1000genomes	TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	110233138	G	C	110233138	3	2	95	1	0	0	0	0	1	0	0	0	6844	1020	36	4	545	4	GSTM1	1	110233138	Missense_Mutation	SNP	G	TCGA-B0-4703-01A-01D-1361-10	24738296	110233138	139017483	4	6078											
NTRK1	4914	hgsc.bcm.edu	37	1	156843698	156843698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	156843698	T	C	156843698	3	2	95	1	0	0	0	0	1	0	0	0	10713	1464	51	3	1284	3	NTRK1	1	156843698	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10	46610560	156843698	92406923	5	6079											
PPFIA4	8497	hgsc.bcm.edu	37	1	203033069	203033069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	203033069	G	T	203033069	3	4	95	1	0	0	0	0	1	0	0	0	12319	1319	46	4	1516	4	PPFIA4	1	203033069	Missense_Mutation	SNP	G	TCGA-B0-4703-01A-01D-1361-10	46189371	203033069	46217552	6	6080											
PSEN2	5664	hgsc.bcm.edu	37	1	227076706	227076706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	227076706	C	A	227076706	3	1	95	1	0	0	0	0	1	0	0	0	12661	594	21	4	761	4	PSEN2	1	227076706	Missense_Mutation	SNP	C	TCGA-B0-4703-01A-01D-1361-10	24043637	227076706	22173915	7	6081											
ALK	238	hgsc.bcm.edu	37	2	29443697	29443697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	G	29443697	A	G	29443697	3	3	95	1	0	0	0	0	1	0	0	0	525	101	4	3	1370	3	ALK	2	29443697	Missense_Mutation	SNP	A	TCGA-B0-4703-01A-01D-1361-10		29443697	213755676	8	6082											
ANKRD53	79998	hgsc.bcm.edu	37	2	71212405	71212405	+	Missense_Mutation	SNP	T	T	C	rs61732279	bycluster;byfrequency;by1000genomes	TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	71212405	T	C	71212405	3	2	95	1	0	0	0	0	1	0	0	0	679	1580	55	3	1721	3	ANKRD53	2	71212405	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10	41768708	71212405	171986968	9	6083											
CHRNA1	1134	hgsc.bcm.edu;ucsc.edu	37	2	175614777	175614777	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	175614777	A	C	175614777	3	2	95	1	0	0	0	0	1	0	0	0	3383	246	9	5	486	5	CHRNA1	2	175614777	Missense_Mutation	SNP	A	TCGA-B0-4703-01A-01D-1361-10	104402372	175614777	67584596	10	6084											
NBEAL1	65065	hgsc.bcm.edu	37	2	203976709	203976709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	203976709	T	C	203976709	3	2	95	1	0	0	0	0	1	0	0	0	10195	1406	49	3	2057	3	NBEAL1	2	203976709	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10	28361932	203976709	39222664	11	6085											
C2orf67	0	hgsc.bcm.edu	37	2	211018604	211018604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	211018604	G	A	211018604	3	1	95	1	0	0	0	0	1	0	0	0	2188	1029	36	2	2316	2	C2orf67	2	211018604	Missense_Mutation	SNP	G	TCGA-B0-4703-01A-01D-1361-10	7041895	211018604	32180769	12	6086											
SETD2	29072	ucsc.edu	37	3	47125222	47125222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	47125222	C	A	47125222	3	1	95	1	0	0	0	0	1	0	0	0	14144	856	30	4	1686	4	SETD2	3	47125222	Missense_Mutation	SNP	C	TCGA-B0-4703-01A-01D-1361-10		47125222	150897208	13	6087											
DNAH1	25981	hgsc.bcm.edu	37	3	52418904	52418904	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	52418904	G	T	52418904	4	4	95	1	0	0	0	0	0	1	0	0	4599	1175	41	4	8631	4	DNAH1	3	52418904	Nonsense_Mutation	SNP	G	TCGA-B0-4703-01A-01D-1361-10	5293682	52418904	145603526	14	6088											
BAP1	8314	ucsc.edu	37	3	52443728	52443728	+	Splice_Site	SNP	A	A	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	A	C	A	A	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	52443728	A	C	52443728	5	2	95	1	0	0	0	0	0	0	1	0	1311	405	14	5	2184	5	BAP1	3	52443728	Splice_Site	SNP	A	TCGA-B0-4703-01A-01D-1361-10	24824	52443728	145578702	15	6089											
SGEF	0	hgsc.bcm.edu;ucsc.edu	37	3	153912433	153912433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	153912433	A	C	153912433	3	2	95	1	0	0	0	0	1	0	0	0	14218	289	10	5	1801	5	SGEF	3	153912433	Missense_Mutation	SNP	A	TCGA-B0-4703-01A-01D-1361-10	101468705	153912433	44109997	16	6090											
RSPH10B	222967	hgsc.bcm.edu	37	7	6000354	6000354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	6000354	C	T	6000354	3	4	95	1	0	0	0	0	1	0	0	0	13716	652	23	1	2135	1	RSPH10B	7	6000354	Missense_Mutation	SNP	C	TCGA-B0-4703-01A-01D-1361-10		6000354	153138309	17	6091											
RSPH10B2	728194	hgsc.bcm.edu	37	7	6816032	6816032	+	Silent	SNP	T	T	C	rs17853307		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	6816032	T	C	6816032	2	2	95	1	0	0	0	0	0	0	0	1	13717	1829	64	3		3	RSPH10B2	7	6816032	Silent	SNP	T	TCGA-B0-4703-01A-01D-1361-10	815678	6816032	152322631	18	6092											
DBNL	28988	hgsc.bcm.edu	37	7	44098492	44098493	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	CC	44098493	-	CC	44098492	7	5	95	1	0	1	1	0	0	0	0	0	4257	1783	62	0	806	0	DBNL	7	44098492	Frame_Shift_Ins	INS	-	TCGA-B0-4703-01A-01D-1361-10	37282460	44098492	115040171	19	6093											
ZPBP	11055	hgsc.bcm.edu	37	7	50057912	50057912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	G	50057912	A	G	50057912	3	3	95	1	0	0	0	0	1	0	0	0	18231	57	2	3	360	3	ZPBP	7	50057912	Missense_Mutation	SNP	A	TCGA-B0-4703-01A-01D-1361-10	5959420	50057912	109080751	20	6094											
ZNF273	10793	hgsc.bcm.edu;ucsc.edu	37	7	64388663	64388663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	64388663	T	A	64388663	3	1	95	1	0	0	0	0	1	0	0	0	17820	1490	52	5	971	5	ZNF273	7	64388663	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10	14330751	64388663	94750000	21	6095											
UBR5	51366	hgsc.bcm.edu	37	8	103266717	103266717	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	103266717	G	T	103266717	4	4	95	1	0	0	0	0	0	1	0	0	16917	1294	45	4	190	4	UBR5	8	103266717	Nonsense_Mutation	SNP	G	TCGA-B0-4703-01A-01D-1361-10		103266717	43097305	22	6096											
TATDN1	83940	hgsc.bcm.edu	37	8	125516567	125516567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	G	125516567	T	G	125516567	3	3	95	1	0	0	0	0	1	0	0	0	15603	1821	63	5	371	5	TATDN1	8	125516567	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10	22249850	125516567	20847455	23	6097											
FAM120A	23196	hgsc.bcm.edu	37	9	96320124	96320124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	G	96320124	A	G	96320124	3	3	95	1	0	0	0	0	1	0	0	0	5419	131	5	3	2554	3	FAM120A	9	96320124	Missense_Mutation	SNP	A	TCGA-B0-4703-01A-01D-1361-10		96320124	44893307	24	6098											
OLFML2A	169611	hgsc.bcm.edu;ucsc.edu	37	9	127566584	127566584	+	Silent	SNP	C	C	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	127566584	C	T	127566584	2	4	95	1	0	0	0	0	0	0	0	1	10864	581	21	2		2	OLFML2A	9	127566584	Silent	SNP	C	TCGA-B0-4703-01A-01D-1361-10	31246460	127566584	13646847	25	6099											
PCSK7	9159	hgsc.bcm.edu	37	11	117076875	117076875	+	Silent	SNP	G	G	A	rs62001039	byfrequency	TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	117076875	G	A	117076875	2	1	95	1	0	0	0	0	0	0	0	1	11612	1136	40	1		1	PCSK7	11	117076875	Silent	SNP	G	TCGA-B0-4703-01A-01D-1361-10		117076875	17929641	26	6100											
PTPRR	5801	hgsc.bcm.edu	37	12	71314149	71314149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	71314149	G	C	71314149	3	2	95	1	0	0	0	0	1	0	0	0	12823	1232	43	4	2007	4	PTPRR	12	71314149	Missense_Mutation	SNP	G	TCGA-B0-4703-01A-01D-1361-10		71314149	62537746	27	6101											
IKBIP	121457	hgsc.bcm.edu	37	12	99007637	99007637	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	99007637	A	T	99007637	3	4	95	1	0	0	0	0	1	0	0	0	7616	14	1	5	277	5	IKBIP	12	99007637	Missense_Mutation	SNP	A	TCGA-B0-4703-01A-01D-1361-10	27693488	99007637	34844258	28	6102											
NCOR2	9612	hgsc.bcm.edu	37	12	124817812	124817812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	124817812	T	C	124817812	3	2	95	1	0	0	0	0	1	0	0	0	10243	1841	64	3	949	3	NCOR2	12	124817812	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10	25810175	124817812	9034083	29	6103											
SLITRK5	26050	hgsc.bcm.edu;ucsc.edu	37	13	88329682	88329682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	88329682	T	C	88329682	3	2	95	1	0	0	0	0	1	0	0	0	14759	1696	59	3	2041	3	SLITRK5	13	88329682	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10		88329682	26840196	30	6104											
SNAPC1	6617	hgsc.bcm.edu;ucsc.edu	37	14	62249031	62249031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	62249031	C	A	62249031	3	1	95	1	0	0	0	0	1	0	0	0	14847	827	29	4	922	4	SNAPC1	14	62249031	Missense_Mutation	SNP	C	TCGA-B0-4703-01A-01D-1361-10		62249031	45100509	31	6105											
UBR7	55148	hgsc.bcm.edu;ucsc.edu	37	14	93678384	93678384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	93678384	G	A	93678384	3	1	95	1	0	0	0	0	1	0	0	0	16918	971	34	2	366	2	UBR7	14	93678384	Missense_Mutation	SNP	G	TCGA-B0-4703-01A-01D-1361-10	31429353	93678384	13671156	32	6106											
KIAA1370	0	hgsc.bcm.edu;ucsc.edu	37	15	52897437	52897437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	52897437	T	C	52897437	3	2	95	1	0	0	0	0	1	0	0	0	8233	1638	57	3	905	3	KIAA1370	15	52897437	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10		52897437	49633955	33	6107											
FSD2	123722	hgsc.bcm.edu	37	15	83438529	83438529	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	83438529	A	C	83438529	3	2	95	1	0	0	0	0	1	0	0	0	6078	304	11	5	898	5	FSD2	15	83438529	Missense_Mutation	SNP	A	TCGA-B0-4703-01A-01D-1361-10	30541092	83438529	19092863	34	6108											
ACSM2B	348158	hgsc.bcm.edu	37	16	20576048	20576048	+	Silent	SNP	C	C	A	rs78729855	bycluster	TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	20576048	C	A	20576048	2	1	95	1	0	0	0	0	0	0	0	1	184	697	25	4		4	ACSM2B	16	20576048	Silent	SNP	C	TCGA-B0-4703-01A-01D-1361-10		20576048	69778705	35	6109											
ACSM1	116285	hgsc.bcm.edu;ucsc.edu	37	16	20696630	20696630	+	Silent	SNP	G	G	A	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	20696630	G	A	20696630	2	1	95	1	0	0	0	0	0	0	0	1	182	1190	42	2		2	ACSM1	16	20696630	Silent	SNP	G	TCGA-B0-4703-01A-01D-1361-10	120582	20696630	69658123	36	6110											
TP53	7157	ucsc.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652	bycluster	TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	7577538	C	T	7577538	3	4	95	1	0	0	0	0	1	0	0	0	16393	652	23	1	547	1	TP53	17	7577538	Missense_Mutation	SNP	C	TCGA-B0-4703-01A-01D-1361-10		7577538	73617672	37	6111											
CD209	30835	hgsc.bcm.edu	37	19	7808097	7808097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	7808097	G	A	7808097	3	1	95	1	0	0	0	0	1	0	0	0	2986	1232	43	2	175	2	CD209	19	7808097	Missense_Mutation	SNP	G	TCGA-B0-4703-01A-01D-1361-10		7808097	51320886	38	6112											
DNMT1	1786	hgsc.bcm.edu	37	19	10273416	10273416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	C	10273416	T	C	10273416	3	2	95	1	0	0	0	0	1	0	0	0	4677	1841	64	3	4079	3	DNMT1	19	10273416	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10	2465319	10273416	48855567	39	6113											
MAP4K1	11184	hgsc.bcm.edu	37	19	39108207	39108207	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	39108207	C	T	39108207	5	4	95	1	0	0	0	0	0	0	1	0	9266	521	18	2	2529	2	MAP4K1	19	39108207	Splice_Site	SNP	C	TCGA-B0-4703-01A-01D-1361-10	28834791	39108207	20020776	40	6114											
TP53TG5	27296	hgsc.bcm.edu	37	20	44002597	44002597	+	Missense_Mutation	SNP	G	G	A	rs2231628	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	44002597	G	A	44002597	3	1	95	1	0	0	0	0	1	0	0	0	16403	1348	47	2	53	2	TP53TG5	20	44002597	Missense_Mutation	SNP	G	TCGA-B0-4703-01A-01D-1361-10		44002597	19022923	41	6115											
GGA1	26088	hgsc.bcm.edu	37	22	38027029	38027029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	T	38027029	C	T	38027029	3	4	95	1	0	0	0	0	1	0	0	0	6359	623	22	2	1571	2	GGA1	22	38027029	Missense_Mutation	SNP	C	TCGA-B0-4703-01A-01D-1361-10		38027029	13277537	42	6116											
ZBTB33	10009	hgsc.bcm.edu	37	X	119388522	119388522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4703-01A-01D-1361-10	TCGA-B0-4703-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	14e3b48e-8013-44a9-aa0d-5a7d385e53c4	4c79ff8a-cd9d-485b-a012-26bb206d018c	A	119388522	T	A	119388522	3	1	95	1	0	0	0	0	1	0	0	0	17548	1838	64	5	1254	5	ZBTB33	23	119388522	Missense_Mutation	SNP	T	TCGA-B0-4703-01A-01D-1361-10		119388522	35882038	43	6117											
VHL	7428	hgsc.bcm.edu	37	3	10183863	10183863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4703-01A-01W-1359-10	TCGA-B0-4703-11A-01W-1359-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	7de1248d-d072-482c-b2c0-3101aebf3c9d	0fbd7142-f929-46d1-bb7a-1d50350da63b	A	10183863	G	A	10183863	3	1	96	1	0	0	0	0	1	0	0	0	17174	971	34	2	334	2	VHL	3	10183863	Missense_Mutation	SNP	G	TCGA-B0-4703-01A-01W-1359-10		10183863	187838567	1	6118											
TPRG1L	127262	broad.mit.edu;hgsc.bcm.edu	37	1	3545080	3545080	+	Silent	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	3545080	C	T	3545080	2	4	97	1	0	0	0	0	0	0	0	1	16431	813	29	2		2	TPRG1L	1	3545080	Silent	SNP	C	TCGA-B0-4706-01A-01D-1501-10		3545080	245705541	1	6119											
ZMYM1	79830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35580687	35580687	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	35580687	T	A	35580687	3	1	97	1	0	0	0	0	1	0	0	0	17711	1551	54	5	3290	5	ZMYM1	1	35580687	Missense_Mutation	SNP	T	TCGA-B0-4706-01A-01D-1501-10	32035607	35580687	213669934	2	6120	61	2									
ZMYM1	79830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35580688	35580688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	35580688	C	T	35580688	3	4	97	1	0	0	0	0	1	0	0	0	17711	838	29	2	3291	2	ZMYM1	1	35580688	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	1	35580688	213669933	3	6121	61	2									
NTRK1	4914	broad.mit.edu	37	1	156843581	156843581	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	156843581	A	A	156843581	3	1	97	1	0	0	0	0	1	0	0	0	10713	710	25	4	1167	4	NTRK1	1	156843581	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	121262893	156843581	92407040	4	6122											
SPTBN1	6711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	54871514	54871514	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	-	54871514	A	-	54871514	7	5	97	1	0	1	0	1	0	0	0	0	15131	247	9	0	4247	0	SPTBN1	2	54871514	Frame_Shift_Del	DEL	A	TCGA-B0-4706-01A-01D-1501-10		54871514	188327859	5	6123											
MRPS5	64969	broad.mit.edu;hgsc.bcm.edu	37	2	95773989	95773989	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	95773989	C	A	95773989	4	1	97	1	0	0	0	0	0	1	0	0	9853	864	30	4	756	4	MRPS5	2	95773989	Nonsense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	40902475	95773989	147425384	6	6124											
FAM123C	0	broad.mit.edu	37	2	131520998	131520998	+	Silent	SNP	G	A	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	131520998	A	A	131520998	2	1	97	1	0	0	0	0	0	0	0	1	5428	1103	39	1		1	FAM123C	2	131520998	Silent	SNP	G	TCGA-B0-4706-01A-01D-1501-10	35747009	131520998	111678375	7	6125											
DNAJC10	54431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	183623959	183623959	+	Silent	SNP	T	T	C	rs140227116	bycluster;by1000genomes	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	C	183623959	T	C	183623959	2	2	97	1	0	0	0	0	0	0	0	1	4631	1490	52	3		3	DNAJC10	2	183623959	Silent	SNP	T	TCGA-B0-4706-01A-01D-1501-10	52102961	183623959	59575414	8	6126											
GAL3ST2	64090	broad.mit.edu;hgsc.bcm.edu	37	2	242741353	242741353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	242741353	G	T	242741353	3	4	97	1	0	0	0	0	1	0	0	0	6205	1232	43	4	287	4	GAL3ST2	2	242741353	Missense_Mutation	SNP	G	TCGA-B0-4706-01A-01D-1501-10	59117394	242741353	458020	9	6127											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191501	10191501	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	10191501	T	A	10191501	3	1	97	1	0	0	0	0	1	0	0	0	17174	1725	60	5	504	5	VHL	3	10191501	Missense_Mutation	SNP	T	TCGA-B0-4706-01A-01D-1501-10		10191501	187830929	10	6128											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47108557	47108557	+	Intron	SNP	T	T	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	47108557	T	A	47108557	1	1	97	0	1	0	0	0	0	0	0	0	14144	1537	53	5		5	SETD2	3	47108557	Intron	SNP	T	TCGA-B0-4706-01A-01D-1501-10	36917056	47108557	150913873	11	6129											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52598097	52598102	+	In_Frame_Del	DEL	TAGCAG	TAGCAG	-	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	TAGCAG	TAGCAG	TAGCAG	-	TAGCAG	TAGCAG	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	-	52598102	TAGCAG	-	52598097	7	5	97	1	0	1	0	1	0	0	0	0	11498	1763	61	0	1088	0	PBRM1	3	52598097	In_Frame_Del	DEL	TAGCAG	TCGA-B0-4706-01A-01D-1501-10	5489540	52598097	145424333	12	6130											
MUC4	4585	hgsc.bcm.edu	37	3	195508415	195508462	+	In_Frame_Del	DEL	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	-	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	-	195508462	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	-	195508415	7	5	97	1	0	1	0	1	0	0	0	0	9985	1203	42	0		0	MUC4	3	195508415	In_Frame_Del	DEL	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	TCGA-B0-4706-01A-01D-1501-10	142910318	195508415	2514015	13	6131											
NCAPG	64151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	17826669	17826670	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	-	17826670	AA	-	17826669	7	5	97	1	0	1	0	1	0	0	0	0	10214	247	9	0	1500	0	NCAPG	4	17826669	Frame_Shift_Del	DEL	AA	TCGA-B0-4706-01A-01D-1501-10		17826669	173327607	14	6132											
NPNT	255743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	106863727	106863727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	106863727	C	A	106863727	3	1	97	1	0	0	0	0	1	0	0	0	10597	507	18	4	1206	4	NPNT	4	106863727	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	89037058	106863727	84290549	15	6133											
DCHS2	54798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	155156296	155156296	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	G	155156296	C	G	155156296	3	3	97	1	0	0	0	0	1	0	0	0	4290	681	24	4	611	4	DCHS2	4	155156296	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	48292569	155156296	35997980	16	6134											
HEATR7B2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	41012760	41012760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	C	41012760	G	C	41012760	3	2	97	1	0	0	0	0	1	0	0	0	7042	1252	44	4	1749	4	HEATR7B2	5	41012760	Missense_Mutation	SNP	G	TCGA-B0-4706-01A-01D-1501-10		41012760	139902500	17	6135											
IQGAP2	10788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	75866461	75866461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	75866461	G	T	75866461	3	4	97	1	0	0	0	0	1	0	0	0	7822	1348	47	4	374	4	IQGAP2	5	75866461	Missense_Mutation	SNP	G	TCGA-B0-4706-01A-01D-1501-10	34853701	75866461	105048799	18	6136											
ATF6B	1388	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	32084267	32084267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	32084267	C	T	32084267	3	4	97	1	0	0	0	0	1	0	0	0	1085	594	21	2	247	2	ATF6B	6	32084267	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10		32084267	139030800	19	6137											
SNX14	57231	hgsc.bcm.edu	37	6	86303401	86303401	+	Silent	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	86303401	C	T	86303401	2	4	97	1	0	0	0	0	0	0	0	1	14898	813	29	2		2	SNX14	6	86303401	Silent	SNP	C	TCGA-B0-4706-01A-01D-1501-10	54219134	86303401	84811666	20	6138											
SEMA3E	9723	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	83021907	83021907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	83021907	C	A	83021907	3	1	97	1	0	0	0	0	1	0	0	0	14041	710	25	4	712	4	SEMA3E	7	83021907	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10		83021907	76116756	21	6139											
CTTNBP2	83992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	117417736	117417736	+	Silent	SNP	A	A	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	117417736	A	T	117417736	2	4	97	1	0	0	0	0	0	0	0	1	4047	291	11	5		5	CTTNBP2	7	117417736	Silent	SNP	A	TCGA-B0-4706-01A-01D-1501-10	34395829	117417736	41720927	22	6140											
TYRP1	7306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	12698513	12698513	+	Silent	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	12698513	C	T	12698513	2	4	97	1	0	0	0	0	0	0	0	1	16828	900	32	2		2	TYRP1	9	12698513	Silent	SNP	C	TCGA-B0-4706-01A-01D-1501-10		12698513	128514918	23	6141											
LCN12	286256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139849846	139849846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	C	139849846	T	C	139849846	3	2	97	1	0	0	0	0	1	0	0	0	8689	1580	55	3	596	3	LCN12	9	139849846	Missense_Mutation	SNP	T	TCGA-B0-4706-01A-01D-1501-10	127151333	139849846	1363585	24	6142											
C9orf173	441476	broad.mit.edu	37	9	140147247	140147247	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	140147247	A	A	140147247	3	1	97	1	0	0	0	0	1	0	0	0	2474	1203	42	2	644	2	C9orf173	9	140147247	Missense_Mutation	SNP	G	TCGA-B0-4706-01A-01D-1501-10	297401	140147247	1066184	25	6143											
KIAA1279	26128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70748679	70748679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	70748679	G	A	70748679	3	1	97	1	0	0	0	0	1	0	0	0	8228	1175	41	2	93	2	KIAA1279	10	70748679	Missense_Mutation	SNP	G	TCGA-B0-4706-01A-01D-1501-10		70748679	64786068	26	6144											
AIFM2	84883	broad.mit.edu	37	10	71874016	71874016	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	71874016	A	A	71874016	3	1	97	1	0	0	0	0	1	0	0	0	427	739	26	4	85	4	AIFM2	10	71874016	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	1125337	71874016	63660731	27	6145											
C10orf27	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	72541707	72541707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	C	72541707	T	C	72541707	3	2	97	1	0	0	0	0	1	0	0	0	1602	1435	50	3	960	3	C10orf27	10	72541707	Missense_Mutation	SNP	T	TCGA-B0-4706-01A-01D-1501-10	667691	72541707	62993040	28	6146											
GBF1	8729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	104111129	104111129	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	104111129	C	T	104111129	4	4	97	1	0	0	0	0	0	1	0	0	6278	827	29	2	426	2	GBF1	10	104111129	Nonsense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	31569422	104111129	31423618	29	6147											
MKI67	4288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	129911780	129911780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	C	129911780	G	C	129911780	3	2	97	1	0	0	0	0	1	0	0	0	9605	1174	41	4	8235	4	MKI67	10	129911780	Missense_Mutation	SNP	G	TCGA-B0-4706-01A-01D-1501-10	25800651	129911780	5622967	30	6148											
NUMA1	4926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	71735322	71735322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	C	71735322	T	C	71735322	3	2	97	1	0	0	0	0	1	0	0	0	10757	1580	55	3	6233	3	NUMA1	11	71735322	Missense_Mutation	SNP	T	TCGA-B0-4706-01A-01D-1501-10		71735322	63271194	31	6149											
PKP2	5318	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32975511	32975511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	32975511	C	T	32975511	3	4	97	1	0	0	0	0	1	0	0	0	11992	922	32	2	808	2	PKP2	12	32975511	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10		32975511	100876384	32	6150											
HOXC8	3224	hgsc.bcm.edu;ucsc.edu	37	12	54403321	54403328	+	Frame_Shift_Del	DEL	GCCTCCAA	GCCTCCAA	-	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	GCCTCCAA	GCCTCCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	-	54403328	GCCTCCAA	-	54403321	7	5	97	1	0	1	0	1	0	0	0	0	7323	1087	38	0	255	0	HOXC8	12	54403321	Frame_Shift_Del	DEL	GCCTCCAA	TCGA-B0-4706-01A-01D-1501-10	21427810	54403321	79448574	33	6151											
LRP1	4035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57554852	57554852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	C	57554852	T	C	57554852	3	2	97	1	0	0	0	0	1	0	0	0	8958	1783	62	3	2206	3	LRP1	12	57554852	Missense_Mutation	SNP	T	TCGA-B0-4706-01A-01D-1501-10	3151531	57554852	76297043	34	6152											
DGKH	160851	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	42773767	42773767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	42773767	C	T	42773767	3	4	97	1	0	0	0	0	1	0	0	0	4472	838	29	2	2425	2	DGKH	13	42773767	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10		42773767	72396111	35	6153											
SETD3	84193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	99932102	99932102	+	Missense_Mutation	SNP	G	G	A	rs186182372	by1000genomes;alternate_allele	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	99932102	G	A	99932102	3	1	97	1	0	0	0	0	1	0	0	0	14145	1029	36	2	1837	2	SETD3	14	99932102	Missense_Mutation	SNP	G	TCGA-B0-4706-01A-01D-1501-10		99932102	7417438	36	6154											
ZSCAN29	146050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43653850	43653850	+	Silent	SNP	A	A	G	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	G	43653850	A	G	43653850	2	3	97	1	0	0	0	0	0	0	0	1	18248	127	5	3		3	ZSCAN29	15	43653850	Silent	SNP	A	TCGA-B0-4706-01A-01D-1501-10		43653850	58877542	37	6155											
FBXO22	26263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	76222396	76222396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	76222396	T	A	76222396	3	1	97	1	0	0	0	0	1	0	0	0	5741	1667	58	5	822	5	FBXO22	15	76222396	Missense_Mutation	SNP	T	TCGA-B0-4706-01A-01D-1501-10	32568546	76222396	26308996	38	6156											
SCAPER	49855	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	77059317	77059317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	G	77059317	A	G	77059317	3	3	97	1	0	0	0	0	1	0	0	0	13891	101	4	3	2929	3	SCAPER	15	77059317	Missense_Mutation	SNP	A	TCGA-B0-4706-01A-01D-1501-10	836921	77059317	25472075	39	6157											
MAN2A2	4122	broad.mit.edu	37	15	91454153	91454153	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	C	91454153	C	C	91454153	3	2	97	1	0	0	0	0	1	0	0	0	9222	275	10	5	1879	5	MAN2A2	15	91454153	Missense_Mutation	SNP	A	TCGA-B0-4706-01A-01D-1501-10	14394836	91454153	11077239	40	6158											
FZR1	51343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3533336	3533336	+	Silent	SNP	G	G	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	3533336	G	A	3533336	2	1	97	1	0	0	0	0	0	0	0	1	6145	1020	36	2		2	FZR1	19	3533336	Silent	SNP	G	TCGA-B0-4706-01A-01D-1501-10		3533336	55595647	41	6159											
ALKBH7	84266	broad.mit.edu	37	19	6374925	6374925	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	6374925	A	A	6374925	3	1	97	1	0	0	0	0	1	0	0	0	532	652	23	4	621	4	ALKBH7	19	6374925	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	2841589	6374925	52754058	42	6160											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9089041	9089041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	9089041	C	A	9089041	3	1	97	1	0	0	0	0	1	0	0	0	9980	565	20	4	41085	4	MUC16	19	9089041	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	2714116	9089041	50039942	43	6161											
DKKL1	27120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49869088	49869088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	49869088	G	T	49869088	3	4	97	1	0	0	0	0	1	0	0	0	4550	933	33	4	377	4	DKKL1	19	49869088	Missense_Mutation	SNP	G	TCGA-B0-4706-01A-01D-1501-10	40780047	49869088	9259895	44	6162											
KLK10	5655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51518692	51518692	+	Missense_Mutation	SNP	C	C	T	rs142960865		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	51518692	C	T	51518692	3	4	97	1	0	0	0	0	1	0	0	0	8405	652	23	1	179	1	KLK10	19	51518692	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	1649604	51518692	7610291	45	6163											
GPCPD1	56261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	5559074	5559074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	C	5559074	T	C	5559074	3	2	97	1	0	0	0	0	1	0	0	0	6610	1628	57	3	1413	3	GPCPD1	20	5559074	Missense_Mutation	SNP	T	TCGA-B0-4706-01A-01D-1501-10		5559074	57466446	46	6164											
ACTR5	79913	broad.mit.edu;hgsc.bcm.edu	37	20	37383750	37383750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	G	37383750	A	G	37383750	3	3	97	1	0	0	0	0	1	0	0	0	215	101	4	3	940	3	ACTR5	20	37383750	Missense_Mutation	SNP	A	TCGA-B0-4706-01A-01D-1501-10	31824676	37383750	25641770	47	6165											
KRTAP10-6	386674	broad.mit.edu	37	21	46011526	46011526	+	Silent	SNP	T	A	A	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	A	46011526	A	A	46011526	2	1	97	1	0	0	0	0	0	0	0	1	8520	1451	51	5		5	KRTAP10-6	21	46011526	Silent	SNP	T	TCGA-B0-4706-01A-01D-1501-10		46011526	2118369	48	6166											
NEFH	4744	hgsc.bcm.edu	37	22	29885575	29885576	+	In_Frame_Ins	INS	-	-	TGAGAAGGCCAAGTCCCC	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	TGAGAAGGCCAAGTCCCC	29885576	-	TGAGAAGGCCAAGTCCCC	29885575	7	5	97	1	0	1	1	0	0	0	0	0	10321	681	24	0	1960	0	NEFH	22	29885575	In_Frame_Ins	INS	-	TCGA-B0-4706-01A-01D-1501-10		29885575	21418991	49	6167											
TCF20	6942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42607162	42607162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	42607162	C	T	42607162	3	4	97	1	0	0	0	0	1	0	0	0	15702	826	29	2	1770	2	TCF20	22	42607162	Missense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10	12721587	42607162	8697404	50	6168											
MAGEB4	4115	broad.mit.edu;hgsc.bcm.edu	37	X	30260747	30260747	+	Silent	SNP	C	C	G	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	G	30260747	C	G	30260747	2	3	97	1	0	0	0	0	0	0	0	1	9185	668	24	4		4	MAGEB4	23	30260747	Silent	SNP	C	TCGA-B0-4706-01A-01D-1501-10		30260747	125009813	51	6169											
ZFY	7544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	Y	2829144	2829144	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	040fdd9b-db76-4357-9aed-77a8cbde058d	c9228cb8-9a17-422d-b984-881a1cd1c4e8	T	2829144	C	T	2829144	4	4	97	1	0	0	0	0	0	1	0	0	17674	827	29	2	97	2	ZFY	24	2829144	Nonsense_Mutation	SNP	C	TCGA-B0-4706-01A-01D-1501-10		2829144	56544422	52	6170											
CATSPER4	378807	hgsc.bcm.edu	37	1	26527920	26527920	+	Silent	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	26527920	G	C	26527920	2	2	98	1	0	0	0	0	0	0	0	1	2692	1045	37	4		4	CATSPER4	1	26527920	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10		26527920	222722701	1	6171											
THRAP3	9967	hgsc.bcm.edu	37	1	36755272	36755272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	36755272	A	G	36755272	3	3	98	1	0	0	0	0	1	0	0	0	15886	14	1	3	1662	3	THRAP3	1	36755272	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	10227352	36755272	212495349	2	6172											
ORC1L	0	hgsc.bcm.edu	37	1	52847347	52847347	+	Silent	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	52847347	A	G	52847347	2	3	98	1	0	0	0	0	0	0	0	1	11268	127	5	3		3	ORC1L	1	52847347	Silent	SNP	A	TCGA-B0-4707-01A-01D-1361-10	16092075	52847347	196403274	3	6173											
PRKACB	5567	hgsc.bcm.edu	37	1	84544032	84544032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	84544032	G	T	84544032	3	4	98	1	0	0	0	0	1	0	0	0	12508	933	33	4	26	4	PRKACB	1	84544032	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	31696685	84544032	164706589	4	6174											
DPH5	51611	hgsc.bcm.edu;ucsc.edu	37	1	101487262	101487262	+	Silent	SNP	T	T	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	101487262	T	A	101487262	2	1	98	1	0	0	0	0	0	0	0	1	4725	1567	55	5		5	DPH5	1	101487262	Silent	SNP	T	TCGA-B0-4707-01A-01D-1361-10	16943230	101487262	147763359	5	6175											
CSDE1	7812	hgsc.bcm.edu	37	1	115276689	115276689	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	115276689	A	T	115276689	3	4	98	1	0	0	0	0	1	0	0	0	3931	14	1	5	1816	5	CSDE1	1	115276689	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	13789427	115276689	133973932	6	6176											
NES	10763	hgsc.bcm.edu	37	1	156642149	156642149	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	156642149	C	G	156642149	3	3	98	1	0	0	0	0	1	0	0	0	10344	478	17	4	3038	4	NES	1	156642149	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	41365460	156642149	92608472	7	6177											
CEP350	9857	hgsc.bcm.edu;ucsc.edu	37	1	180065296	180065296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	180065296	C	T	180065296	3	4	98	1	0	0	0	0	1	0	0	0	3256	855	30	2	9181	2	CEP350	1	180065296	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	23423147	180065296	69185325	8	6178											
MOSC1	0	hgsc.bcm.edu;ucsc.edu	37	1	220978582	220978582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	220978582	A	G	220978582	3	3	98	1	0	0	0	0	1	0	0	0	9720	217	8	3	875	3	MOSC1	1	220978582	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	40913286	220978582	28272039	9	6179											
GREB1	9687	hgsc.bcm.edu	37	2	11725903	11725903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	11725903	C	A	11725903	3	1	98	1	0	0	0	0	1	0	0	0	6767	855	30	4	1061	4	GREB1	2	11725903	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10		11725903	231473470	10	6180											
C2orf70	339778	hgsc.bcm.edu	37	2	26800423	26800423	+	Missense_Mutation	SNP	G	G	A	rs182524035	by1000genomes	TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	26800423	G	A	26800423	3	1	98	1	0	0	0	0	1	0	0	0	2192	1232	43	2	398	2	C2orf70	2	26800423	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	15074520	26800423	216398950	11	6181											
HEATR5B	54497	hgsc.bcm.edu	37	2	37297442	37297442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	37297442	T	A	37297442	3	1	98	1	0	0	0	0	1	0	0	0	7039	1751	61	5	5477	5	HEATR5B	2	37297442	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	10497019	37297442	205901931	12	6182											
PLEKHH2	130271	hgsc.bcm.edu;ucsc.edu	37	2	43969891	43969891	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	43969891	G	C	43969891	3	2	98	1	0	0	0	0	1	0	0	0	12084	1174	41	4	3315	4	PLEKHH2	2	43969891	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	6672449	43969891	199229482	13	6183											
SCTR	6344	hgsc.bcm.edu;ucsc.edu	37	2	120221705	120221705	+	Silent	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	120221705	G	A	120221705	2	1	98	1	0	0	0	0	0	0	0	1	13956	1219	43	2		2	SCTR	2	120221705	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10	76251814	120221705	122977668	14	6184											
ZNF804A	91752	hgsc.bcm.edu;ucsc.edu	37	2	185731108	185731109	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	-	185731109	AA	-	185731108	7	5	98	1	0	1	0	1	0	0	0	0	18182	247	9	0	130	0	ZNF804A	2	185731108	Frame_Shift_Del	DEL	AA	TCGA-B0-4707-01A-01D-1361-10	65509403	185731108	57468265	15	6185											
VIL1	7429	hgsc.bcm.edu	37	2	219301349	219301349	+	Silent	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	219301349	G	A	219301349	2	1	98	1	0	0	0	0	0	0	0	1	17176	1014	35	2		2	VIL1	2	219301349	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10	33570241	219301349	23898024	16	6186											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191542	10191543	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	-	10191543	GA	-	10191542	7	5	98	1	0	1	0	1	0	0	0	0	17174	1174	41	0	545	0	VHL	3	10191542	Frame_Shift_Del	DEL	GA	TCGA-B0-4707-01A-01D-1361-10		10191542	187830888	17	6187											
CDHR4	389118	hgsc.bcm.edu	37	3	49836830	49836830	+	Silent	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	49836830	G	A	49836830	2	1	98	1	0	0	0	0	0	0	0	1	3123	1194	42	2		2	CDHR4	3	49836830	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10	39645288	49836830	148185600	18	6188											
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52442513	52442516	+	Frame_Shift_Del	DEL	TCAC	TCAC	-	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	TCAC	TCAC	TCAC	-	TCAC	TCAC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	-	52442516	TCAC	-	52442513	7	5	98	1	0	1	0	1	0	0	0	0	1311	1783	62	0	2013	0	BAP1	3	52442513	Frame_Shift_Del	DEL	TCAC	TCGA-B0-4707-01A-01D-1361-10	2605683	52442513	145579917	19	6189											
GLT8D1	55830	hgsc.bcm.edu	37	3	52730619	52730619	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	52730619	T	G	52730619	3	3	98	1	0	0	0	0	1	0	0	0	6476	1667	58	5	753	5	GLT8D1	3	52730619	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	288106	52730619	145291811	20	6190											
ALCAM	214	hgsc.bcm.edu;ucsc.edu	37	3	105269022	105269022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	105269022	T	G	105269022	3	3	98	1	0	0	0	0	1	0	0	0	487	1783	62	5	1472	5	ALCAM	3	105269022	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	52538403	105269022	92753408	21	6191											
BTLA	151888	hgsc.bcm.edu;ucsc.edu	37	3	112185075	112185075	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	112185075	T	G	112185075	3	3	98	1	0	0	0	0	1	0	0	0	1560	1838	64	5	123	5	BTLA	3	112185075	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	6916053	112185075	85837355	22	6192											
HSPBAP1	79663	hgsc.bcm.edu;ucsc.edu	37	3	122459679	122459679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	122459679	G	T	122459679	3	4	98	1	0	0	0	0	1	0	0	0	7432	1319	46	4	490	4	HSPBAP1	3	122459679	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	10274604	122459679	75562751	23	6193											
YEATS2	55689	hgsc.bcm.edu;ucsc.edu	37	3	183525823	183525823	+	Silent	SNP	G	G	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	183525823	G	T	183525823	2	4	98	1	0	0	0	0	0	0	0	1	17484	1161	41	4		4	YEATS2	3	183525823	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10	61066144	183525823	14496607	24	6194											
EPHB3	2049	hgsc.bcm.edu	37	3	184294703	184294703	+	Silent	SNP	C	C	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	184294703	C	A	184294703	2	1	98	1	0	0	0	0	0	0	0	1	5178	610	22	4		4	EPHB3	3	184294703	Silent	SNP	C	TCGA-B0-4707-01A-01D-1361-10	768880	184294703	13727727	25	6195											
EVC2	132884	hgsc.bcm.edu;ucsc.edu	37	4	5567008	5567008	+	Silent	SNP	C	C	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	5567008	C	A	5567008	2	1	98	1	0	0	0	0	0	0	0	1	5288	465	17	4		4	EVC2	4	5567008	Silent	SNP	C	TCGA-B0-4707-01A-01D-1361-10		5567008	185587268	26	6196											
TMEM156	80008	hgsc.bcm.edu	37	4	39000337	39000337	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	39000337	A	C	39000337	3	2	98	1	0	0	0	0	1	0	0	0	16085	14	1	5	629	5	TMEM156	4	39000337	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	33433329	39000337	152153939	27	6197											
IL31RA	133396	hgsc.bcm.edu	37	5	55164729	55164729	+	Silent	SNP	A	A	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	55164729	A	C	55164729	2	2	98	1	0	0	0	0	0	0	0	1	7698	296	11	5		5	IL31RA	5	55164729	Silent	SNP	A	TCGA-B0-4707-01A-01D-1361-10		55164729	125750531	28	6198											
VCAN	1462	hgsc.bcm.edu;ucsc.edu	37	5	82834378	82834378	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	82834378	T	G	82834378	3	3	98	1	0	0	0	0	1	0	0	0	17150	1838	64	5	5582	5	VCAN	5	82834378	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	27669649	82834378	98080882	29	6199											
PCDHB11	56125	hgsc.bcm.edu;ucsc.edu	37	5	140580255	140580255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	140580255	T	C	140580255	3	2	98	1	0	0	0	0	1	0	0	0	11543	1764	61	3	910	3	PCDHB11	5	140580255	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	57745877	140580255	40335005	30	6200											
DCTN4	51164	hgsc.bcm.edu;ucsc.edu	37	5	150138487	150138487	+	Silent	SNP	C	C	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	150138487	C	T	150138487	2	4	98	1	0	0	0	0	0	0	0	1	4311	755	27	1		1	DCTN4	5	150138487	Silent	SNP	C	TCGA-B0-4707-01A-01D-1361-10	9558232	150138487	30776773	31	6201											
HLA-DRB5	3127	hgsc.bcm.edu	37	6	32485527	32485527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	32485527	G	A	32485527	3	1	98	1	0	0	0	0	1	0	0	0	7216	1029	36	2	14	2	HLA-DRB5	6	32485527	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10		32485527	138629540	32	6202											
MED20	9477	hgsc.bcm.edu;ucsc.edu	37	6	41884633	41884633	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	41884633	G	C	41884633	3	2	98	1	0	0	0	0	1	0	0	0	9445	1261	44	4	591	4	MED20	6	41884633	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	9399106	41884633	129230434	33	6203											
REV3L	5980	hgsc.bcm.edu;ucsc.edu	37	6	111621271	111621271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	111621271	T	C	111621271	3	2	98	1	0	0	0	0	1	0	0	0	13253	1493	52	3	55	3	REV3L	6	111621271	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	69736638	111621271	59493796	34	6204											
FYN	2534	hgsc.bcm.edu;ucsc.edu	37	6	112017520	112017520	+	Silent	SNP	A	A	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	112017520	A	T	112017520	2	4	98	1	0	0	0	0	0	0	0	1	6133	175	7	5		5	FYN	6	112017520	Silent	SNP	A	TCGA-B0-4707-01A-01D-1361-10	396249	112017520	59097547	35	6205											
KDELR2	11014	hgsc.bcm.edu	37	7	6505900	6505900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	6505900	A	G	6505900	3	3	98	1	0	0	0	0	1	0	0	0	8127	101	4	3	415	3	KDELR2	7	6505900	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10		6505900	152632763	36	6206											
AEBP1	165	hgsc.bcm.edu;ucsc.edu	37	7	44152202	44152202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	44152202	C	A	44152202	3	1	98	1	0	0	0	0	1	0	0	0	349	623	22	4	2333	4	AEBP1	7	44152202	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	37646302	44152202	114986461	37	6207											
MLXIPL	51085	hgsc.bcm.edu	37	7	73008676	73008676	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	73008676	T	G	73008676	3	3	98	1	0	0	0	0	1	0	0	0	9644	1609	56	5	198	5	MLXIPL	7	73008676	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	28856474	73008676	86129987	38	6208											
ELN	2006	hgsc.bcm.edu;ucsc.edu	37	7	73452038	73452038	+	Silent	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	73452038	G	A	73452038	2	1	98	1	0	0	0	0	0	0	0	1	5073	1101	38	1		1	ELN	7	73452038	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10	443362	73452038	85686625	39	6209											
PCLO	27445	hgsc.bcm.edu	37	7	82474791	82474791	+	Silent	SNP	C	C	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	82474791	C	T	82474791	2	4	98	1	0	0	0	0	0	0	0	1	11590	871	31	1		1	PCLO	7	82474791	Silent	SNP	C	TCGA-B0-4707-01A-01D-1361-10	9022753	82474791	76663872	40	6210											
MUC17	140453	hgsc.bcm.edu	37	7	100684143	100684143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	100684143	C	A	100684143	3	1	98	1	0	0	0	0	1	0	0	0	9981	913	32	4	9456	4	MUC17	7	100684143	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	18209352	100684143	58454520	41	6211											
FOXP2	93986	hgsc.bcm.edu	37	7	114282645	114282645	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	114282645	G	C	114282645	3	2	98	1	0	0	0	0	1	0	0	0	6034	1174	41	4	1112	4	FOXP2	7	114282645	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	13598502	114282645	44856018	42	6212											
CSGALNACT1	55790	hgsc.bcm.edu;ucsc.edu	37	8	19263569	19263569	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	19263569	G	C	19263569	3	2	98	1	0	0	0	0	1	0	0	0	3940	933	33	4	281	4	CSGALNACT1	8	19263569	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10		19263569	127100453	43	6213											
NSMAF	8439	hgsc.bcm.edu;ucsc.edu	37	8	59515834	59515834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	59515834	C	T	59515834	3	4	98	1	0	0	0	0	1	0	0	0	10681	710	25	2	1849	2	NSMAF	8	59515834	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	40252265	59515834	86848188	44	6214											
PLEC	5339	hgsc.bcm.edu;ucsc.edu	37	8	145000956	145000956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	145000956	T	A	145000956	3	1	98	1	0	0	0	0	1	0	0	0	12059	1551	54	5	9615	5	PLEC	8	145000956	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	85485122	145000956	1363066	45	6215											
SHARPIN	81858	hgsc.bcm.edu;ucsc.edu	37	8	145154874	145154874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	145154874	C	T	145154874	3	4	98	1	0	0	0	0	1	0	0	0	14280	835	29	2	712	2	SHARPIN	8	145154874	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	153918	145154874	1209148	46	6216											
FOXH1	8928	hgsc.bcm.edu;ucsc.edu	37	8	145701057	145701057	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	145701057	T	A	145701057	3	1	98	1	0	0	0	0	1	0	0	0	6015	1638	57	5	1026	5	FOXH1	8	145701057	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	546183	145701057	662965	47	6217											
KIAA1529	0	hgsc.bcm.edu;ucsc.edu	37	9	100053695	100053695	+	Silent	SNP	C	C	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	100053695	C	G	100053695	2	3	98	1	0	0	0	0	0	0	0	1	8247	697	25	4		4	KIAA1529	9	100053695	Silent	SNP	C	TCGA-B0-4707-01A-01D-1361-10		100053695	41159736	48	6218											
AKR1C2	1646	hgsc.bcm.edu;ucsc.edu	37	10	5042784	5042784	+	Silent	SNP	G	G	A	rs13945	bycluster;byfrequency;by1000genomes	TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	5042784	G	A	5042784	2	1	98	1	0	0	0	0	0	0	0	1	470	1020	36	2		2	AKR1C2	10	5042784	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10		5042784	130491963	49	6219											
MYO3A	53904	hgsc.bcm.edu	37	10	26385321	26385321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	26385321	A	G	26385321	3	3	98	1	0	0	0	0	1	0	0	0	10083	101	4	3	1628	3	MYO3A	10	26385321	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	21342537	26385321	109149426	50	6220											
CRTAC1	55118	hgsc.bcm.edu	37	10	99642574	99642574	+	Silent	SNP	T	T	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	99642574	T	C	99642574	2	2	98	1	0	0	0	0	0	0	0	1	3898	1422	50	3		3	CRTAC1	10	99642574	Silent	SNP	T	TCGA-B0-4707-01A-01D-1361-10	73257253	99642574	35892173	51	6221											
COL17A1	1308	hgsc.bcm.edu;ucsc.edu	37	10	105792704	105792704	+	Silent	SNP	G	G	T	rs143826232	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	105792704	G	T	105792704	2	4	98	1	0	0	0	0	0	0	0	1	3676	1219	43	4		4	COL17A1	10	105792704	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10	6150130	105792704	29742043	52	6222											
FAM160B1	57700	hgsc.bcm.edu	37	10	116602698	116602698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	116602698	A	G	116602698	3	3	98	1	0	0	0	0	1	0	0	0	5474	333	12	3	551	3	FAM160B1	10	116602698	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	10809994	116602698	18932049	53	6223											
EIF3A	8661	hgsc.bcm.edu	37	10	120820287	120820287	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	120820287	T	G	120820287	3	3	98	1	0	0	0	0	1	0	0	0	5014	1841	64	5	2907	5	EIF3A	10	120820287	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	4217589	120820287	14714460	54	6224											
DUSP8	1850	hgsc.bcm.edu	37	11	1579466	1579466	+	Silent	SNP	G	G	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	1579466	G	T	1579466	2	4	98	1	0	0	0	0	0	0	0	1	4833	1277	45	4		4	DUSP8	11	1579466	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10		1579466	133427050	55	6225											
RRM1	6240	hgsc.bcm.edu;ucsc.edu	37	11	4144587	4144587	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	4144587	A	C	4144587	3	2	98	1	0	0	0	0	1	0	0	0	13694	11	1	5	1339	5	RRM1	11	4144587	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	2565121	4144587	130861929	56	6226											
ARFIP2	23647	hgsc.bcm.edu;ucsc.edu	37	11	6500117	6500117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	6500117	T	A	6500117	3	1	98	1	0	0	0	0	1	0	0	0	855	1435	50	5	653	5	ARFIP2	11	6500117	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	2355530	6500117	128506399	57	6227											
DNHD1	144132	hgsc.bcm.edu	37	11	6554304	6554304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	6554304	A	C	6554304	3	2	98	1	0	0	0	0	1	0	0	0	4670	14	1	5	2446	5	DNHD1	11	6554304	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	54187	6554304	128452212	58	6228											
PITPNM1	9600	hgsc.bcm.edu	37	11	67269868	67269868	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	67269868	C	G	67269868	3	3	98	1	0	0	0	0	1	0	0	0	11957	536	19	4	3508	4	PITPNM1	11	67269868	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	60715564	67269868	67736648	59	6229											
CCDC89	220388	hgsc.bcm.edu;ucsc.edu	37	11	85396614	85396614	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	85396614	G	C	85396614	3	2	98	1	0	0	0	0	1	0	0	0	2868	1029	36	4	568	4	CCDC89	11	85396614	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	18126746	85396614	49609902	60	6230											
FAM55D	0	hgsc.bcm.edu	37	11	114453112	114453112	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	114453112	C	G	114453112	3	3	98	1	0	0	0	0	1	0	0	0	5594	478	17	4	922	4	FAM55D	11	114453112	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	29056498	114453112	20553404	61	6231											
ACAD8	27034	hgsc.bcm.edu	37	11	134131674	134131674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	134131674	G	A	134131674	3	1	98	1	0	0	0	0	1	0	0	0	110	1203	42	2	1016	2	ACAD8	11	134131674	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	19678562	134131674	874842	62	6232											
C1RL	51279	hgsc.bcm.edu	37	12	7261734	7261734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	7261734	G	A	7261734	3	1	98	1	0	0	0	0	1	0	0	0	1975	1232	43	2	1444	2	C1RL	12	7261734	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10		7261734	126590161	63	6233											
TUBA1C	84790	hgsc.bcm.edu	37	12	49666182	49666182	+	Silent	SNP	G	G	A	rs17123575	byfrequency	TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	49666182	G	A	49666182	2	1	98	1	0	0	0	0	0	0	0	1	16757	1074	38	1		1	TUBA1C	12	49666182	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10	42404448	49666182	84185713	64	6234											
COPZ1	22818	hgsc.bcm.edu	37	12	54741560	54741560	+	Silent	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	54741560	A	G	54741560	2	3	98	1	0	0	0	0	0	0	0	1	3743	407	15	3		3	COPZ1	12	54741560	Silent	SNP	A	TCGA-B0-4707-01A-01D-1361-10	5075378	54741560	79110335	65	6235											
LRIG3	121227	hgsc.bcm.edu;ucsc.edu	37	12	59280606	59280606	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	59280606	G	C	59280606	3	2	98	1	0	0	0	0	1	0	0	0	8953	1368	48	4	2245	4	LRIG3	12	59280606	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	4539046	59280606	74571289	66	6236											
FLT1	2321	hgsc.bcm.edu;ucsc.edu	37	13	28979950	28979950	+	Silent	SNP	A	A	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	28979950	A	T	28979950	2	4	98	1	0	0	0	0	0	0	0	1	5948	291	11	5		5	FLT1	13	28979950	Silent	SNP	A	TCGA-B0-4707-01A-01D-1361-10		28979950	86189928	67	6237											
MTUS2	23281	hgsc.bcm.edu;ucsc.edu	37	13	29600572	29600572	+	Silent	SNP	C	C	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	29600572	C	G	29600572	2	3	98	1	0	0	0	0	0	0	0	1	9973	784	28	4		4	MTUS2	13	29600572	Silent	SNP	C	TCGA-B0-4707-01A-01D-1361-10	620622	29600572	85569306	68	6238											
TNFSF11	8600	hgsc.bcm.edu;ucsc.edu	37	13	43155267	43155267	+	Silent	SNP	T	T	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	43155267	T	C	43155267	2	2	98	1	0	0	0	0	0	0	0	1	16314	1432	50	3		3	TNFSF11	13	43155267	Silent	SNP	T	TCGA-B0-4707-01A-01D-1361-10	13554695	43155267	72014611	69	6239											
HECTD1	25831	hgsc.bcm.edu	37	14	31626470	31626470	+	Silent	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	31626470	A	G	31626470	2	3	98	1	0	0	0	0	0	0	0	1	7046	11	1	3		3	HECTD1	14	31626470	Silent	SNP	A	TCGA-B0-4707-01A-01D-1361-10		31626470	75723070	70	6240											
SPTBN5	51332	hgsc.bcm.edu	37	15	42165753	42165753	+	Silent	SNP	C	C	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	42165753	C	G	42165753	2	3	98	1	0	0	0	0	0	0	0	1	15134	581	21	4		4	SPTBN5	15	42165753	Silent	SNP	C	TCGA-B0-4707-01A-01D-1361-10		42165753	60365639	71	6241											
MAP2K5	5607	hgsc.bcm.edu	37	15	68099075	68099075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	68099075	A	G	68099075	3	3	98	1	0	0	0	0	1	0	0	0	9247	188	7	3	1420	3	MAP2K5	15	68099075	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	25933322	68099075	34432317	72	6242											
KIAA1199	57214	hgsc.bcm.edu;ucsc.edu	37	15	81173292	81173292	+	Silent	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	81173292	G	A	81173292	2	1	98	1	0	0	0	0	0	0	0	1	8220	1219	43	2		2	KIAA1199	15	81173292	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10	13074217	81173292	21358100	73	6243											
BNC1	646	hgsc.bcm.edu;ucsc.edu	37	15	83932843	83932843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	83932843	C	T	83932843	3	4	98	1	0	0	0	0	1	0	0	0	1474	710	25	2	1832	2	BNC1	15	83932843	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	2759551	83932843	18598549	74	6244											
NTRK3	4916	hgsc.bcm.edu;ucsc.edu	37	15	88476290	88476290	+	Silent	SNP	G	G	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	88476290	G	T	88476290	2	4	98	1	0	0	0	0	0	0	0	1	10715	1280	45	4		4	NTRK3	15	88476290	Silent	SNP	G	TCGA-B0-4707-01A-01D-1361-10	4543447	88476290	14055102	75	6245											
HMOX2	3163	hgsc.bcm.edu;ucsc.edu	37	16	4558089	4558089	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	4558089	A	T	4558089	3	4	98	1	0	0	0	0	1	0	0	0	7251	130	5	5	590	5	HMOX2	16	4558089	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10		4558089	85796664	76	6246											
BFAR	51283	hgsc.bcm.edu;ucsc.edu	37	16	14758726	14758726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	14758726	G	A	14758726	3	1	98	1	0	0	0	0	1	0	0	0	1414	1188	41	2	980	2	BFAR	16	14758726	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	10200637	14758726	75596027	77	6247											
ZNF423	23090	hgsc.bcm.edu	37	16	49670845	49670845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	49670845	C	A	49670845	3	1	98	1	0	0	0	0	1	0	0	0	17910	739	26	4	1656	4	ZNF423	16	49670845	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	34912119	49670845	40683908	78	6248											
NFAT5	10725	hgsc.bcm.edu	37	16	69726498	69726498	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	69726498	C	G	69726498	3	3	98	1	0	0	0	0	1	0	0	0	10367	595	21	4	2820	4	NFAT5	16	69726498	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	20055653	69726498	20628255	79	6249											
YWHAE	7531	hgsc.bcm.edu;ucsc.edu	37	17	1248776	1248776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	1248776	C	G	1248776	3	3	98	1	0	0	0	0	1	0	0	0	17514	922	32	4	38	4	YWHAE	17	1248776	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10		1248776	79946434	80	6250											
TAF15	8148	hgsc.bcm.edu;ucsc.edu	37	17	34171159	34171159	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	34171159	A	C	34171159	3	2	98	1	0	0	0	0	1	0	0	0	15530	101	4	5	1135	5	TAF15	17	34171159	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	32922383	34171159	47024051	81	6251											
STAC2	342667	hgsc.bcm.edu	37	17	37369807	37369807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	37369807	C	T	37369807	3	4	98	1	0	0	0	0	1	0	0	0	15252	603	21	2	301	2	STAC2	17	37369807	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	3198648	37369807	43825403	82	6252											
KRT26	353288	hgsc.bcm.edu;ucsc.edu	37	17	38925284	38925284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	38925284	A	G	38925284	3	3	98	1	0	0	0	0	1	0	0	0	8470	101	4	3	384	3	KRT26	17	38925284	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	1555477	38925284	42269926	83	6253											
ABCC3	8714	hgsc.bcm.edu	37	17	48741136	48741136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	48741136	C	G	48741136	3	3	98	1	0	0	0	0	1	0	0	0	54	796	28	4	1127	4	ABCC3	17	48741136	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	9815852	48741136	32454074	84	6254											
JMJD6	23210	hgsc.bcm.edu;ucsc.edu	37	17	74717895	74717895	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	74717895	G	C	74717895	4	2	98	1	0	0	0	0	0	1	0	0	7960	1294	45	4	338	4	JMJD6	17	74717895	Nonsense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	25976759	74717895	6477315	85	6255											
TSHZ3	57616	hgsc.bcm.edu;ucsc.edu	37	19	31770448	31770448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	31770448	C	A	31770448	3	1	98	1	0	0	0	0	1	0	0	0	16637	884	31	4	2998	4	TSHZ3	19	31770448	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10		31770448	27358535	86	6256											
PLEKHG2	64857	hgsc.bcm.edu	37	19	39911720	39911720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	39911720	G	A	39911720	3	1	98	1	0	0	0	0	1	0	0	0	12076	1261	44	2	1507	2	PLEKHG2	19	39911720	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	8141272	39911720	19217263	87	6257											
CIC	23152	hgsc.bcm.edu;ucsc.edu	37	19	42791498	42791498	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	42791498	T	A	42791498	3	1	98	1	0	0	0	0	1	0	0	0	3426	1435	50	5	493	5	CIC	19	42791498	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	2879778	42791498	16337485	88	6258											
PSG4	5672	hgsc.bcm.edu;ucsc.edu	37	19	43699379	43699379	+	Silent	SNP	T	T	C	rs3928381	by1000genomes	TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	43699379	T	C	43699379	2	2	98	1	0	0	0	0	0	0	0	1	12667	1548	54	3		3	PSG4	19	43699379	Silent	SNP	T	TCGA-B0-4707-01A-01D-1361-10	907881	43699379	15429604	89	6259											
CCDC155	147872	hgsc.bcm.edu	37	19	49913125	49913125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	49913125	G	T	49913125	3	4	98	1	0	0	0	0	1	0	0	0	2790	1232	43	4	1316	4	CCDC155	19	49913125	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	6213746	49913125	9215858	90	6260											
LENG8	114823	hgsc.bcm.edu	37	19	54969354	54969354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	54969354	G	A	54969354	3	1	98	1	0	0	0	0	1	0	0	0	8731	1377	48	2	2025	2	LENG8	19	54969354	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	5056229	54969354	4159629	91	6261											
CENPB	1059	hgsc.bcm.edu	37	20	3765902	3765902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	3765902	T	A	3765902	3	1	98	1	0	0	0	0	1	0	0	0	3229	1551	54	5	574	5	CENPB	20	3765902	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10		3765902	59259618	92	6262											
BMP2	650	hgsc.bcm.edu	37	20	6758921	6758921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	6758921	G	A	6758921	3	1	98	1	0	0	0	0	1	0	0	0	1459	1348	47	2	382	2	BMP2	20	6758921	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	2993019	6758921	56266599	93	6263											
POTED	317754	hgsc.bcm.edu;ucsc.edu	37	21	15013721	15013721	+	Missense_Mutation	SNP	A	A	G	rs2334582		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	G	15013721	A	G	15013721	3	3	98	1	0	0	0	0	1	0	0	0	12270	188	7	3	1631	3	POTED	21	15013721	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10		15013721	33116174	94	6264											
GGTLC2	91227	hgsc.bcm.edu	37	22	22989281	22989281	+	Silent	SNP	T	T	C	rs3966363	bycluster;byfrequency;by1000genomes	TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	22989281	T	C	22989281	2	2	98	1	0	0	0	0	0	0	0	1	6373	1461	51	3		3	GGTLC2	22	22989281	Silent	SNP	T	TCGA-B0-4707-01A-01D-1361-10		22989281	28315285	95	6265											
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38483174	38483174	+	Missense_Mutation	SNP	A	A	T	rs78489217	byfrequency;by1000genomes	TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	38483174	A	T	38483174	3	4	98	1	0	0	0	0	1	0	0	0	1303	275	10	5	389	5	BAIAP2L2	22	38483174	Missense_Mutation	SNP	A	TCGA-B0-4707-01A-01D-1361-10	15493893	38483174	12821392	96	6266											
APOBEC3D	140564	hgsc.bcm.edu;ucsc.edu	37	22	39421350	39421350	+	Silent	SNP	T	T	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	39421350	T	C	39421350	2	2	98	1	0	0	0	0	0	0	0	1	792	1471	51	3		3	APOBEC3D	22	39421350	Silent	SNP	T	TCGA-B0-4707-01A-01D-1361-10	938176	39421350	11883216	97	6267											
BEND2	139105	hgsc.bcm.edu	37	X	18234663	18234663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	18234663	G	T	18234663	3	4	98	1	0	0	0	0	1	0	0	0	1398	1252	44	4	2261	4	BEND2	23	18234663	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10		18234663	137035897	98	6268											
FAM47C	442444	hgsc.bcm.edu	37	X	37027645	37027645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	37027645	C	T	37027645	3	4	98	1	0	0	0	0	1	0	0	0	5578	507	18	2	1164	2	FAM47C	23	37027645	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	18792982	37027645	118242915	99	6269											
SRPX	8406	hgsc.bcm.edu;ucsc.edu	37	X	38024095	38024095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	38024095	G	C	38024095	3	2	98	1	0	0	0	0	1	0	0	0	15176	1261	44	4	838	4	SRPX	23	38024095	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	996450	38024095	117246465	100	6270											
FAM123B	0	hgsc.bcm.edu	37	X	63411177	63411177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	63411177	T	A	63411177	3	1	98	1	0	0	0	0	1	0	0	0	5427	1435	50	5	1421	5	FAM123B	23	63411177	Missense_Mutation	SNP	T	TCGA-B0-4707-01A-01D-1361-10	25387082	63411177	91859383	101	6271											
ZNF711	7552	hgsc.bcm.edu	37	X	84526414	84526414	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	C	84526414	G	C	84526414	3	2	98	1	0	0	0	0	1	0	0	0	18128	991	35	4	1892	4	ZNF711	23	84526414	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	21115237	84526414	70744146	102	6272											
PCDH11X	27328	hgsc.bcm.edu;ucsc.edu	37	X	91133589	91133589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	91133589	G	A	91133589	3	1	98	1	0	0	0	0	1	0	0	0	11515	1291	45	2	2356	2	PCDH11X	23	91133589	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	6607175	91133589	64136971	103	6273											
COL4A5	1287	hgsc.bcm.edu	37	X	107865065	107865065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	T	107865065	C	T	107865065	3	4	98	1	0	0	0	0	1	0	0	0	3696	855	30	2	2836	2	COL4A5	23	107865065	Missense_Mutation	SNP	C	TCGA-B0-4707-01A-01D-1361-10	16731476	107865065	47405495	104	6274											
FMR1NB	158521	hgsc.bcm.edu;ucsc.edu	37	X	147088324	147088324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4707-01A-01D-1361-10	TCGA-B0-4707-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	35aae57d-66e3-41e2-903c-1d690b589281	7304b89e-62e6-49ef-bcfb-385bae77ff52	A	147088324	G	A	147088324	3	1	98	1	0	0	0	0	1	0	0	0	5968	1232	43	2	510	2	FMR1NB	23	147088324	Missense_Mutation	SNP	G	TCGA-B0-4707-01A-01D-1361-10	39223259	147088324	8182236	105	6275											
CDKN2A	1029	hgsc.bcm.edu	37	9	21971000	21971000	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4707-01A-01W-1359-10	TCGA-B0-4707-11A-01W-1359-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	f63a8eac-4ea2-46a4-821d-89432eda8a8e	dec40479-9b0c-4c4c-8c39-5379b44e4fb7	A	21971000	C	A	21971000	4	1	99	1	0	0	0	0	0	1	0	0	3163	864	30	4	120	4	CDKN2A	9	21971000	Nonsense_Mutation	SNP	C	TCGA-B0-4707-01A-01W-1359-10		21971000	119242431	1	6276											
KIF1B	23095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10318553	10318553	+	Silent	SNP	C	C	T	rs141998703	bycluster;byfrequency;by1000genomes	TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	10318553	C	T	10318553	2	4	100	1	0	0	0	0	0	0	0	1	8291	639	23	1		1	KIF1B	1	10318553	Silent	SNP	C	TCGA-B0-4710-01A-01D-1501-10		10318553	238932068	1	6277											
HECTD3	79654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	45471468	45471468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	45471468	G	T	45471468	3	4	100	1	0	0	0	0	1	0	0	0	7048	962	34	4	680	4	HECTD3	1	45471468	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	35152915	45471468	203779153	2	6278											
ZYG11B	79699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	53245564	53245564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	53245564	C	A	53245564	3	1	100	1	0	0	0	0	1	0	0	0	18265	564	20	4	1005	4	ZYG11B	1	53245564	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	7774096	53245564	196005057	3	6279											
POGZ	23126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151400320	151400320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	151400320	C	T	151400320	3	4	100	1	0	0	0	0	1	0	0	0	12193	661	23	1	3241	1	POGZ	1	151400320	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	98154756	151400320	97850301	4	6280											
YY1AP1	55249	broad.mit.edu	37	1	155642422	155642422	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	155642422	G	G	155642422	3	3	100	1	0	0	0	0	1	0	0	0	17520	217	8	3	1760	3	YY1AP1	1	155642422	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10	4242102	155642422	93608199	5	6281											
TTC24	164118	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156552877	156552877	+	Silent	SNP	C	C	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	156552877	C	T	156552877	2	4	100	1	0	0	0	0	0	0	0	1	16704	738	26	2		2	TTC24	1	156552877	Silent	SNP	C	TCGA-B0-4710-01A-01D-1501-10	910455	156552877	92697744	6	6282											
USH2A	7399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	216219777	216219777	+	Silent	SNP	G	G	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	216219777	G	T	216219777	2	4	100	1	0	0	0	0	0	0	0	1	17048	1277	45	4		4	USH2A	1	216219777	Silent	SNP	G	TCGA-B0-4710-01A-01D-1501-10	59666900	216219777	33030844	7	6283											
FMN2	56776	broad.mit.edu	37	1	240370978	240370978	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	240370978	A	A	240370978	3	1	100	1	0	0	0	0	1	0	0	0	5957	855	30	4	2884	4	FMN2	1	240370978	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	24151201	240370978	8879643	8	6284											
MYT1L	23040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1927018	1927018	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	1927018	A	-	1927018	7	5	100	1	0	1	0	1	0	0	0	0	10114	130	5	0	3095	0	MYT1L	2	1927018	Frame_Shift_Del	DEL	A	TCGA-B0-4710-01A-01D-1501-10		1927018	241272355	9	6285											
MGAT4A	11320	broad.mit.edu;ucsc.edu	37	2	99272830	99272830	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	99272830	A	A	99272830	3	1	100	1	0	0	0	0	1	0	0	0	9552	1174	41	2	1043	2	MGAT4A	2	99272830	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	97345812	99272830	143926543	10	6286											
NPHP1	4867	hgsc.bcm.edu;ucsc.edu	37	2	110922107	110922107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	110922107	G	-	110922107	7	5	100	1	0	1	0	1	0	0	0	0	10586	1000	35	0	1324	0	NPHP1	2	110922107	Frame_Shift_Del	DEL	G	TCGA-B0-4710-01A-01D-1501-10	11649277	110922107	132277266	11	6287											
IL1F9	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	113736198	113736198	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	113736198	T	A	113736198	5	1	100	1	0	0	0	0	0	0	1	0	7664	1710	59	5		5	IL1F9	2	113736198	Splice_Site	SNP	T	TCGA-B0-4710-01A-01D-1501-10	2814091	113736198	129463175	12	6288											
ACVR1C	130399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	158412667	158412667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	158412667	A	G	158412667	3	3	100	1	0	0	0	0	1	0	0	0	222	391	14	3	1027	3	ACVR1C	2	158412667	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10	44676469	158412667	84786706	13	6289											
SCN9A	6335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	167055543	167055543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	G	T	G	G	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	167055543	G	T	167055543	3	4	100	1	0	0	0	0	1	0	0	0	13938	942	33	4	364	4	SCN9A	2	167055543	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	8642876	167055543	76143830	14	6290											
TRIP12	9320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	230675664	230675665	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	230675665	-	T	230675664	7	5	100	1	0	1	1	0	0	0	0	0	16568	217	8	0	4081	0	TRIP12	2	230675664	Frame_Shift_Ins	INS	-	TCGA-B0-4710-01A-01D-1501-10	63620121	230675664	12523709	15	6291											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47143045	47143045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	47143045	A	T	47143045	3	4	100	1	0	0	0	0	1	0	0	0	14144	173	6	5	2832	5	SETD2	3	47143045	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10		47143045	150879385	16	6292											
KBTBD8	84541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	67049417	67049417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	67049417	C	G	67049417	3	3	100	1	0	0	0	0	1	0	0	0	8006	913	32	4	35	4	KBTBD8	3	67049417	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	19906372	67049417	130973013	17	6293			1	12		3	3	174	C		1.095109e-07
KBTBD8	84541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	67049444	67049444	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	67049444	C	G	67049444	3	3	100	1	0	0	0	0	1	0	0	0	8006	913	32	4	62	4	KBTBD8	3	67049444	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	27	67049444	130972986	18	6294			1	12		3	3	174	C		1.095109e-07
KBTBD8	84541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	67049590	67049590	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	67049590	C	G	67049590	3	3	100	1	0	0	0	0	1	0	0	0	8006	913	32	4	208	4	KBTBD8	3	67049590	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	146	67049590	130972840	19	6295			1	12		3	3	174	C		1.095109e-07
GPR27	2850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	71804019	71804019	+	Silent	SNP	G	G	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	71804019	G	T	71804019	2	4	100	1	0	0	0	0	0	0	0	1	6692	1335	47	4		4	GPR27	3	71804019	Silent	SNP	G	TCGA-B0-4710-01A-01D-1501-10	4754429	71804019	126218411	20	6296											
CHRD	8646	broad.mit.edu	37	3	184100196	184100196	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	184100196	T	T	184100196	3	4	100	1	0	0	0	0	1	0	0	0	3374	710	25	2	745	2	CHRD	3	184100196	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	112296177	184100196	13922234	21	6297											
METAP1	23173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	99955422	99955422	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	99955422	G	T	99955422	4	4	100	1	0	0	0	0	0	1	0	0	9493	1175	41	4	218	4	METAP1	4	99955422	Nonsense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10		99955422	91198854	22	6298											
PRLR	5618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	35084671	35084671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	35084671	A	G	35084671	3	3	100	1	0	0	0	0	1	0	0	0	12541	391	14	3	1618	3	PRLR	5	35084671	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10		35084671	145830589	23	6299											
ARL15	54622	hgsc.bcm.edu;ucsc.edu	37	5	53409047	53409047	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	53409047	A	-	53409047	7	5	100	1	0	1	0	1	0	0	0	0	931	291	11	0	175	0	ARL15	5	53409047	Frame_Shift_Del	DEL	A	TCGA-B0-4710-01A-01D-1501-10	18324376	53409047	127506213	24	6300	62	2									
ARL15	54622	hgsc.bcm.edu;ucsc.edu	37	5	53409049	53409049	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	53409049	C	-	53409049	7	5	100	1	0	1	0	1	0	0	0	0	931	797	28	0	177	0	ARL15	5	53409049	Frame_Shift_Del	DEL	C	TCGA-B0-4710-01A-01D-1501-10	2	53409049	127506211	25	6301	62	2									
MBLAC2	153364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	89757120	89757120	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	89757120	A	C	89757120	3	2	100	1	0	0	0	0	1	0	0	0	9359	14	1	5	139	5	MBLAC2	5	89757120	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10	36348071	89757120	91158140	26	6302											
C5orf13	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	111310973	111310973	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	111310973	A	-	111310973	7	5	100	1	0	1	0	1	0	0	0	0	2284	130	5	0	224	0	C5orf13	5	111310973	Frame_Shift_Del	DEL	A	TCGA-B0-4710-01A-01D-1501-10	21553853	111310973	69604287	27	6303											
TCP11	6954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35087006	35087006	+	Silent	SNP	A	A	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	35087006	A	T	35087006	2	4	100	1	0	0	0	0	0	0	0	1	15725	144	5	5		5	TCP11	6	35087006	Silent	SNP	A	TCGA-B0-4710-01A-01D-1501-10		35087006	136028061	28	6304											
GSTA3	2940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	52764813	52764813	+	Silent	SNP	T	T	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	52764813	T	C	52764813	2	2	100	1	0	0	0	0	0	0	0	1	6839	1403	49	3		3	GSTA3	6	52764813	Silent	SNP	T	TCGA-B0-4710-01A-01D-1501-10	17677807	52764813	118350254	29	6305											
C7orf10	79783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	40900017	40900017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	40900017	A	G	40900017	3	3	100	1	0	0	0	0	1	0	0	0	2378	333	12	3	1302	3	C7orf10	7	40900017	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10		40900017	118238646	30	6306											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	48315960	48315961	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	48315961	-	A	48315960	7	5	100	1	0	1	1	0	0	0	0	0	31	827	29	0	6592	0	ABCA13	7	48315960	Frame_Shift_Ins	INS	-	TCGA-B0-4710-01A-01D-1501-10	7415943	48315960	110822703	31	6307											
UPK3B	80761	broad.mit.edu;hgsc.bcm.edu	37	7	76140064	76140064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	76140064	G	T	76140064	3	4	100	1	0	0	0	0	1	0	0	0	17023	1232	43	4	97	4	UPK3B	7	76140064	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	27824104	76140064	82998599	32	6308											
PEX1	5189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92136429	92136429	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	92136429	G	C	92136429	3	2	100	1	0	0	0	0	1	0	0	0	11742	1174	41	4	2229	4	PEX1	7	92136429	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	15996365	92136429	67002234	33	6309											
FAM200A	221786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99144587	99144587	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	99144587	A	C	99144587	3	2	100	1	0	0	0	0	1	0	0	0	5540	246	9	5	281	5	FAM200A	7	99144587	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10	7008158	99144587	59994076	34	6310	63	2									
FAM200A	221786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99144589	99144589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	99144589	C	T	99144589	3	4	100	1	0	0	0	0	1	0	0	0	5540	565	20	2	283	2	FAM200A	7	99144589	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	2	99144589	59994074	35	6311	63	2									
C7orf49	78996	broad.mit.edu;ucsc.edu	37	7	134853617	134853617	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	134853617	T	T	134853617	3	4	100	1	0	0	0	0	1	0	0	0	2400	1357	47	4	427	4	C7orf49	7	134853617	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	35709028	134853617	24285046	36	6312											
TRIM24	8805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	138265317	138265317	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	138265317	A	C	138265317	3	2	100	1	0	0	0	0	1	0	0	0	16510	333	12	5	2658	5	TRIM24	7	138265317	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10	3411700	138265317	20873346	37	6313											
PRSS3	5646	hgsc.bcm.edu	37	9	33799094	33799094	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	33799094	T	-	33799094	7	5	100	1	0	1	0	1	0	0	0	0	12632	1702	59	0	893	0	PRSS3	9	33799094	Frame_Shift_Del	DEL	T	TCGA-B0-4710-01A-01D-1501-10		33799094	107414337	38	6314											
FAM120A	23196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	96318810	96318810	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	96318810	C	G	96318810	3	3	100	1	0	0	0	0	1	0	0	0	5419	854	30	4	2471	4	FAM120A	9	96318810	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	62519716	96318810	44894621	39	6315											
KIAA0368	23392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	114159361	114159361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	114159361	C	A	114159361	3	1	100	1	0	0	0	0	1	0	0	0	8178	739	26	4	2898	4	KIAA0368	9	114159361	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	17840551	114159361	27054070	40	6316											
NR6A1	2649	hgsc.bcm.edu;ucsc.edu	37	9	127298262	127298262	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	127298262	T	-	127298262	7	5	100	1	0	1	0	1	0	0	0	0	10644	1580	55	0	484	0	NR6A1	9	127298262	Frame_Shift_Del	DEL	T	TCGA-B0-4710-01A-01D-1501-10	13138901	127298262	13915169	41	6317											
ARMC3	219681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	23321851	23321851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	23321851	G	C	23321851	3	2	100	1	0	0	0	0	1	0	0	0	952	1175	41	4	2374	4	ARMC3	10	23321851	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10		23321851	112212896	42	6318											
ZNF22	7570	broad.mit.edu;ucsc.edu	37	10	45499247	45499247	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	45499247	T	T	45499247	3	4	100	1	0	0	0	0	1	0	0	0	17786	1377	48	4	433	4	ZNF22	10	45499247	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	22177396	45499247	90035500	43	6319											
CDH23	64072	broad.mit.edu	37	10	73442209	73442209	+	Silent	SNP	C	T	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	73442209	T	T	73442209	2	4	100	1	0	0	0	0	0	0	0	1	3110	767	27	1		1	CDH23	10	73442209	Silent	SNP	C	TCGA-B0-4710-01A-01D-1501-10	27942962	73442209	62092538	44	6320											
ASCC1	51008	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	73912709	73912709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	73912709	C	A	73912709	3	1	100	1	0	0	0	0	1	0	0	0	1031	739	26	4	425	4	ASCC1	10	73912709	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	470500	73912709	61622038	45	6321											
CYP2R1	120227	hgsc.bcm.edu	37	11	14913615	14913616	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	14913616	-	G	14913615	7	5	100	1	0	1	1	0	0	0	0	0	4175	188	7	0	1388	0	CYP2R1	11	14913615	Frame_Shift_Ins	INS	-	TCGA-B0-4710-01A-01D-1501-10		14913615	120092901	46	6322											
CHST1	8534	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	45671655	45671655	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	45671655	G	-	45671655	7	5	100	1	0	1	0	1	0	0	0	0	3399	1335	47	0	420	0	CHST1	11	45671655	Frame_Shift_Del	DEL	G	TCGA-B0-4710-01A-01D-1501-10	30758040	45671655	89334861	47	6323											
OR5T3	390154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56020415	56020415	+	Missense_Mutation	SNP	C	C	A	rs149435695	alternate_allele	TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	56020415	C	A	56020415	3	1	100	1	0	0	0	0	1	0	0	0	11190	855	30	4	742	4	OR5T3	11	56020415	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	10348760	56020415	78986101	48	6324											
MOGAT2	80168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	75439854	75439854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	75439854	T	C	75439854	3	2	100	1	0	0	0	0	1	0	0	0	9702	1609	56	3	688	3	MOGAT2	11	75439854	Missense_Mutation	SNP	T	TCGA-B0-4710-01A-01D-1501-10	19419439	75439854	59566662	49	6325											
CLNS1A	1207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	77348740	77348742	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	77348742	AAA	-	77348740	7	5	100	1	0	1	0	1	0	0	0	0	3550	246	9	0	717	0	CLNS1A	11	77348740	In_Frame_Del	DEL	AAA	TCGA-B0-4710-01A-01D-1501-10	1908886	77348740	57657776	50	6326											
MTNR1B	4544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92714908	92714908	+	Silent	SNP	G	G	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	92714908	G	C	92714908	2	2	100	1	0	0	0	0	0	0	0	1	9959	1306	46	4		4	MTNR1B	11	92714908	Silent	SNP	G	TCGA-B0-4710-01A-01D-1501-10	15366168	92714908	42291608	51	6327											
DDX6	1656	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118635936	118635937	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	118635937	-	A	118635936	7	5	100	1	0	1	1	0	0	0	0	0	4379	1744	61	0	856	0	DDX6	11	118635936	Frame_Shift_Ins	INS	-	TCGA-B0-4710-01A-01D-1501-10	25921028	118635936	16370580	52	6328											
PLEKHA5	54477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	19436378	19436378	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	19436378	G	C	19436378	3	2	100	1	0	0	0	0	1	0	0	0	12066	1174	41	4	1502	4	PLEKHA5	12	19436378	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10		19436378	114415517	53	6329											
TRHDE	29953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	73012774	73012774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	73012774	C	A	73012774	3	1	100	1	0	0	0	0	1	0	0	0	16491	912	32	4	2340	4	TRHDE	12	73012774	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	53576396	73012774	60839121	54	6330											
ATP12A	479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25266644	25266644	+	Silent	SNP	C	C	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	25266644	C	T	25266644	2	4	100	1	0	0	0	0	0	0	0	1	1122	871	31	1		1	ATP12A	13	25266644	Silent	SNP	C	TCGA-B0-4710-01A-01D-1501-10		25266644	89903234	55	6331											
DCAF11	80344	hgsc.bcm.edu;ucsc.edu	37	14	24590696	24590697	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	AC	24590697	-	AC	24590696	7	5	100	1	0	1	1	0	0	0	0	0	4264	1522	53	0	1415	0	DCAF11	14	24590696	Frame_Shift_Ins	INS	-	TCGA-B0-4710-01A-01D-1501-10		24590696	82758844	56	6332											
AHNAK2	113146	broad.mit.edu;ucsc.edu	37	14	105420074	105420074	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	105420074	T	T	105420074	3	4	100	1	0	0	0	0	1	0	0	0	415	623	22	2	15677	2	AHNAK2	14	105420074	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	80829378	105420074	1929466	57	6333											
JAG2	3714	broad.mit.edu	37	14	105618587	105618587	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	105618587	G	G	105618587	3	3	100	1	0	0	0	0	1	0	0	0	7942	275	10	3	2970	3	JAG2	14	105618587	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10	198513	105618587	1730953	58	6334											
BRF1	2972	hgsc.bcm.edu;ucsc.edu	37	14	105684036	105684049	+	Frame_Shift_Del	DEL	ATTGATCTTGCTGG	ATTGATCTTGCTGG	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	ATTGATCTTGCTGG	ATTGATCTTGCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	105684049	ATTGATCTTGCTGG	-	105684036	7	5	100	1	0	1	0	1	0	0	0	0	1512	98	4	0	432	0	BRF1	14	105684036	Frame_Shift_Del	DEL	ATTGATCTTGCTGG	TCGA-B0-4710-01A-01D-1501-10	65449	105684036	1665504	59	6335											
ULK3	25989	hgsc.bcm.edu	37	15	75134624	75134624	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	75134624	A	-	75134624	7	5	100	1	0	1	0	1	0	0	0	0	16989	243	9	0	1238	0	ULK3	15	75134624	Frame_Shift_Del	DEL	A	TCGA-B0-4710-01A-01D-1501-10		75134624	27396768	60	6336											
SLC16A11	162515	broad.mit.edu	37	17	6946682	6946682	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	6946682	-	-	6946682	7	5	100	1	0	1	0	1	0	0	0	0	14417	1357	47	0	1208	0	SLC16A11	17	6946682	Frame_Shift_Del	DEL	G	TCGA-B0-4710-01A-01D-1501-10		6946682	74248528	61	6337											
TP53	7157	broad.mit.edu;ucsc.edu	37	17	7578211	7578211	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	7578211	T	T	7578211	3	4	100	1	0	0	0	0	1	0	0	0	16393	884	31	1	656	1	TP53	17	7578211	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	631529	7578211	73616999	62	6338											
CCDC42	146849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8638483	8638483	+	Missense_Mutation	SNP	C	C	A	rs147736220	byfrequency;alternate_allele	TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	8638483	C	A	8638483	3	1	100	1	0	0	0	0	1	0	0	0	2816	912	32	4	154	4	CCDC42	17	8638483	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	1060272	8638483	72556727	63	6339											
SCO1	6341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10596183	10596183	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	10596183	C	G	10596183	3	3	100	1	0	0	0	0	1	0	0	0	13944	855	30	4	461	4	SCO1	17	10596183	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	1957700	10596183	70599027	64	6340											
MYO19	80179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34857066	34857066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	34857066	G	T	34857066	3	4	100	1	0	0	0	0	1	0	0	0	10074	1348	47	4	842	4	MYO19	17	34857066	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	24260883	34857066	46338144	65	6341											
EFTUD2	9343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42936450	42936450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	42936450	T	C	42936450	3	2	100	1	0	0	0	0	1	0	0	0	4963	1821	63	3	998	3	EFTUD2	17	42936450	Missense_Mutation	SNP	T	TCGA-B0-4710-01A-01D-1501-10	8079384	42936450	38258760	66	6342											
DNAH17	8632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76491993	76491993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	76491993	C	T	76491993	3	4	100	1	0	0	0	0	1	0	0	0	4603	768	27	1	7697	1	DNAH17	17	76491993	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	33555543	76491993	4703217	67	6343											
WDR18	57418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	994289	994289	+	Silent	SNP	C	C	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	994289	C	T	994289	2	4	100	1	0	0	0	0	0	0	0	1	17290	816	29	2		2	WDR18	19	994289	Silent	SNP	C	TCGA-B0-4710-01A-01D-1501-10		994289	58134694	68	6344											
IFI30	10437	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18286174	18286174	+	Silent	SNP	G	G	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	18286174	G	A	18286174	2	1	100	1	0	0	0	0	0	0	0	1	7522	1020	36	2		2	IFI30	19	18286174	Silent	SNP	G	TCGA-B0-4710-01A-01D-1501-10	17291885	18286174	40842809	69	6345											
ARMC6	93436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19166161	19166161	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	19166161	G	C	19166161	3	2	100	1	0	0	0	0	1	0	0	0	955	1175	41	4	1054	4	ARMC6	19	19166161	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	879987	19166161	39962822	70	6346											
CCNE1	898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	30303636	30303636	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	30303636	G	C	30303636	3	2	100	1	0	0	0	0	1	0	0	0	2922	1087	38	4	70	4	CCNE1	19	30303636	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	11137475	30303636	28825347	71	6347	64	2									
CCNE1	898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	30303637	30303637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	30303637	C	T	30303637	3	4	100	1	0	0	0	0	1	0	0	0	2922	768	27	1	71	1	CCNE1	19	30303637	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	1	30303637	28825346	72	6348	64	2									
ZNF607	84775	hgsc.bcm.edu;ucsc.edu	37	19	38189521	38189521	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	-	38189521	G	-	38189521	7	5	100	1	0	1	0	1	0	0	0	0	18045	1000	35	0	583	0	ZNF607	19	38189521	Frame_Shift_Del	DEL	G	TCGA-B0-4710-01A-01D-1501-10	7885884	38189521	20939462	73	6349											
ZNF221	7638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44470618	44470618	+	Silent	SNP	A	A	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	44470618	A	C	44470618	2	2	100	1	0	0	0	0	0	0	0	1	17787	412	15	5		5	ZNF221	19	44470618	Silent	SNP	A	TCGA-B0-4710-01A-01D-1501-10	6281097	44470618	14658365	74	6350											
MYH14	79784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50812921	50812921	+	Silent	SNP	C	C	G	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	G	50812921	C	G	50812921	2	3	100	1	0	0	0	0	0	0	0	1	10040	610	22	4		4	MYH14	19	50812921	Silent	SNP	C	TCGA-B0-4710-01A-01D-1501-10	6342303	50812921	8316062	75	6351											
LILRA2	11027	broad.mit.edu;ucsc.edu	37	19	55085835	55085835	+	Silent	SNP	C	A	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	55085835	A	A	55085835	2	1	100	1	0	0	0	0	0	0	0	1	8792	610	22	4		4	LILRA2	19	55085835	Silent	SNP	C	TCGA-B0-4710-01A-01D-1501-10	4272914	55085835	4043148	76	6352											
FCAR	2204	broad.mit.edu;hgsc.bcm.edu	37	19	55396904	55396904	+	Missense_Mutation	SNP	C	C	T	rs143972917		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	55396904	C	T	55396904	3	4	100	1	0	0	0	0	1	0	0	0	5780	643	23	1	338	1	FCAR	19	55396904	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	311069	55396904	3732079	77	6353											
NLRP5	126206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56552314	56552314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	56552314	C	T	56552314	3	4	100	1	0	0	0	0	1	0	0	0	10487	536	19	1	2855	1	NLRP5	19	56552314	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10	1155410	56552314	2576669	78	6354											
PLCB4	5332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	9382178	9382178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	9382178	A	C	9382178	3	2	100	1	0	0	0	0	1	0	0	0	12037	14	1	5	1618	5	PLCB4	20	9382178	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10		9382178	53643342	79	6355											
MAOA	4128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	43571201	43571201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	43571201	C	T	43571201	3	4	100	1	0	0	0	0	1	0	0	0	9232	478	17	2	403	2	MAOA	23	43571201	Missense_Mutation	SNP	C	TCGA-B0-4710-01A-01D-1501-10		43571201	111699359	80	6356											
ZMYM3	9203	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	70467240	70467240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	70467240	G	T	70467240	3	4	100	1	0	0	0	0	1	0	0	0	17713	1357	47	4	1895	4	ZMYM3	23	70467240	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	26896039	70467240	84803320	81	6357											
PABPC5	140886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	90691460	90691460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	90691460	A	C	90691460	3	2	100	1	0	0	0	0	1	0	0	0	11374	246	9	5	886	5	PABPC5	23	90691460	Missense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10	20224220	90691460	64579100	82	6358											
RPA4	29935	broad.mit.edu;hgsc.bcm.edu	37	X	96139817	96139817	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	96139817	A	T	96139817	4	4	100	1	0	0	0	0	0	1	0	0	13552	363	13	5	510	5	RPA4	23	96139817	Nonsense_Mutation	SNP	A	TCGA-B0-4710-01A-01D-1501-10	5448357	96139817	59130743	83	6359											
ARMCX2	9823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	100912452	100912452	+	Silent	SNP	G	G	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	100912452	G	A	100912452	2	1	100	1	0	0	0	0	0	0	0	1	960	1335	47	2		2	ARMCX2	23	100912452	Silent	SNP	G	TCGA-B0-4710-01A-01D-1501-10	4772635	100912452	54358108	84	6360											
MAGEC1	9947	broad.mit.edu;ucsc.edu	37	X	140996270	140996270	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	C	140996270	C	C	140996270	3	2	100	1	0	0	0	0	1	0	0	0	9187	1232	43	4	3086	4	MAGEC1	23	140996270	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	40083818	140996270	14274290	85	6361											
MAGEA10	4109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151303633	151303633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	T	151303633	G	T	151303633	3	4	100	1	0	0	0	0	1	0	0	0	9171	1203	42	4	653	4	MAGEA10	23	151303633	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	10307363	151303633	3966927	86	6362											
F8	2157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	154194857	154194857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4710-01A-01D-1501-10	TCGA-B0-4710-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab8d170-2b88-47a1-9a56-ec0007652446	a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81	A	154194857	G	A	154194857	3	1	100	1	0	0	0	0	1	0	0	0	5352	942	33	2	6044	2	F8	23	154194857	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01D-1501-10	2891224	154194857	1075703	87	6363											
VHL	7428	hgsc.bcm.edu	37	3	10183776	10183776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4710-01A-01W-1528-10	TCGA-B0-4710-11A-02W-1528-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	0a4d83b9-b7a5-4ab4-b9ca-92627f361b07	d71c3e47-a16b-4744-94f8-301369d6774b	C	10183776	G	C	10183776	3	2	101	1	0	0	0	0	1	0	0	0	17174	1087	38	4	247	4	VHL	3	10183776	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01W-1528-10		10183776	187838654	1	6364											
KDM5C	8242	hgsc.bcm.edu	37	X	53222460	53222460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4710-01A-01W-1528-10	TCGA-B0-4710-11A-02W-1528-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	0a4d83b9-b7a5-4ab4-b9ca-92627f361b07	d71c3e47-a16b-4744-94f8-301369d6774b	A	53222460	G	A	53222460	3	1	101	1	0	0	0	0	1	0	0	0	8142	1086	38	1	412	1	KDM5C	23	53222460	Missense_Mutation	SNP	G	TCGA-B0-4710-01A-01W-1528-10		53222460	102048100	2	6365											
C1orf213	148898	broad.mit.edu	37	1	23696047	23696047	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	23696047	G	G	23696047	3	3	102	1	0	0	0	0	1	0	0	0	2032	449	16	3	259	3	C1orf213	1	23696047	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10		23696047	225554574	1	6366											
PHC2	1912	hgsc.bcm.edu	37	1	33820749	33820769	+	In_Frame_Del	DEL	GGCTGCTGCTGTTGTGGCTGT	GGCTGCTGCTGTTGTGGCTGT	-	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	GGCTGCTGCTGTTGTGGCTGT	GGCTGCTGCTGTTGTGGCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	-	33820769	GGCTGCTGCTGTTGTGGCTGT	-	33820749	7	5	102	1	0	1	0	1	0	0	0	0	11824	1116	39	0	1526	0	PHC2	1	33820749	In_Frame_Del	DEL	GGCTGCTGCTGTTGTGGCTGT	TCGA-B0-4712-01A-01D-1501-10	10124702	33820749	215429872	2	6367											
C1orf173	127254	broad.mit.edu;ucsc.edu	37	1	75102000	75102000	+	Silent	SNP	G	T	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	75102000	T	T	75102000	2	4	102	1	0	0	0	0	0	0	0	1	2016	987	35	4		4	C1orf173	1	75102000	Silent	SNP	G	TCGA-B0-4712-01A-01D-1501-10	41281251	75102000	174148621	3	6368											
COL24A1	255631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	86315055	86315055	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	86315055	C	G	86315055	3	3	102	1	0	0	0	0	1	0	0	0	3685	913	32	4	1901	4	COL24A1	1	86315055	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	11213055	86315055	162935566	4	6369											
SLC16A4	9122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110921782	110921782	+	Silent	SNP	A	A	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	110921782	A	C	110921782	2	2	102	1	0	0	0	0	0	0	0	1	14423	407	15	5		5	SLC16A4	1	110921782	Silent	SNP	A	TCGA-B0-4712-01A-01D-1501-10	24606727	110921782	138328839	5	6370											
DENND2C	163259	broad.mit.edu	37	1	115151368	115151368	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	115151368	G	G	115151368	3	3	102	1	0	0	0	0	1	0	0	0	4432	420	15	3	1338	3	DENND2C	1	115151368	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10	4229586	115151368	134099253	6	6371											
PRPF3	9129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150312943	150312943	+	Silent	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	150312943	C	T	150312943	2	4	102	1	0	0	0	0	0	0	0	1	12575	813	29	2		2	PRPF3	1	150312943	Silent	SNP	C	TCGA-B0-4712-01A-01D-1501-10	35161575	150312943	98937678	7	6372											
TADA1	117143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	166833059	166833059	+	Splice_Site	SNP	A	A	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	166833059	A	T	166833059	5	4	102	1	0	0	0	0	0	0	1	0	15521	405	14	5	695	5	TADA1	1	166833059	Splice_Site	SNP	A	TCGA-B0-4712-01A-01D-1501-10	16520116	166833059	82417562	8	6373											
C1orf124	0	broad.mit.edu;hgsc.bcm.edu	37	1	231489083	231489083	+	Silent	SNP	A	A	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	231489083	A	G	231489083	2	3	102	1	0	0	0	0	0	0	0	1	1994	69	3	3		3	C1orf124	1	231489083	Silent	SNP	A	TCGA-B0-4712-01A-01D-1501-10	64656024	231489083	17761538	9	6374											
PLD5	200150	broad.mit.edu;hgsc.bcm.edu	37	1	242253369	242253369	+	Silent	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	242253369	G	A	242253369	2	1	102	1	0	0	0	0	0	0	0	1	12056	1306	46	2		2	PLD5	1	242253369	Silent	SNP	G	TCGA-B0-4712-01A-01D-1501-10	10764286	242253369	6997252	10	6375											
C2orf18	0	broad.mit.edu	37	2	27001276	27001276	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	27001276	A	A	27001276	3	1	102	1	0	0	0	0	1	0	0	0	2160	1145	40	1	1035	1	C2orf18	2	27001276	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10		27001276	216198097	11	6376											
DHX57	90957	broad.mit.edu	37	2	39088979	39088979	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	39088979	A	A	39088979	3	1	102	1	0	0	0	0	1	0	0	0	4515	521	18	4	3667	4	DHX57	2	39088979	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	12087703	39088979	204110394	12	6377											
B3GNT2	10678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	62450134	62450134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	62450134	A	G	62450134	3	3	102	1	0	0	0	0	1	0	0	0	1257	101	4	3	781	3	B3GNT2	2	62450134	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10	23361155	62450134	180749239	13	6378											
SCN2A	6326	broad.mit.edu;hgsc.bcm.edu	37	2	166201197	166201197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	166201197	G	A	166201197	3	1	102	1	0	0	0	0	1	0	0	0	13929	1116	39	1	2849	1	SCN2A	2	166201197	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	103751063	166201197	76998176	14	6379											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170028541	170028541	+	Silent	SNP	T	T	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	170028541	T	C	170028541	2	2	102	1	0	0	0	0	0	0	0	1	8963	1567	55	3		3	LRP2	2	170028541	Silent	SNP	T	TCGA-B0-4712-01A-01D-1501-10	3827344	170028541	73170832	15	6380											
TTN	7273	broad.mit.edu;ucsc.edu	37	2	179575503	179575503	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	179575503	T	T	179575503	3	4	102	1	0	0	0	0	1	0	0	0	16747	661	23	1	76268	1	TTN	2	179575503	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	9546962	179575503	63623870	16	6381											
CFLAR	8837	broad.mit.edu;hgsc.bcm.edu	37	2	202025389	202025389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	202025389	A	G	202025389	3	3	102	1	0	0	0	0	1	0	0	0	3294	333	12	3	1122	3	CFLAR	2	202025389	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10	22449886	202025389	41173984	17	6382											
NCL	4691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	232322358	232322358	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	232322358	C	G	232322358	3	3	102	1	0	0	0	0	1	0	0	0	10233	856	30	4	713	4	NCL	2	232322358	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	30296969	232322358	10877015	18	6383											
TTLL3	26140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9868880	9868880	+	Silent	SNP	T	T	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	9868880	T	C	9868880	2	2	102	1	0	0	0	0	0	0	0	1	16740	1413	49	3		3	TTLL3	3	9868880	Silent	SNP	T	TCGA-B0-4712-01A-01D-1501-10		9868880	188153550	19	6384											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10191570	10191570	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	10191570	G	G	10191570	3	3	102	1	0	0	0	0	1	0	0	0	17174	1580	55	5	573	5	VHL	3	10191570	Missense_Mutation	SNP	T	TCGA-B0-4712-01A-01D-1501-10	322690	10191570	187830860	20	6385											
SETD2	29072	broad.mit.edu;ucsc.edu	37	3	47165360	47165360	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	47165360	A	A	47165360	4	1	102	1	0	0	0	0	0	1	0	0	14144	1328	46	2	7004	2	SETD2	3	47165360	Nonsense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	36973790	47165360	150857070	21	6386	65	2									
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47165361	47165361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	47165361	C	G	47165361	3	3	102	1	0	0	0	0	1	0	0	0	14144	796	28	4	7005	4	SETD2	3	47165361	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	1	47165361	150857069	22	6387	65	2									
WDR52	55779	broad.mit.edu;ucsc.edu	37	3	113022837	113022837	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	113022837	G	G	113022837	3	3	102	1	0	0	0	0	1	0	0	0	17316	1841	64	5	577	5	WDR52	3	113022837	Missense_Mutation	SNP	T	TCGA-B0-4712-01A-01D-1501-10	65857476	113022837	84999593	23	6388											
ARGFX	503582	broad.mit.edu;hgsc.bcm.edu	37	3	121305227	121305227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	121305227	C	G	121305227	3	3	102	1	0	0	0	0	1	0	0	0	859	855	30	4	742	4	ARGFX	3	121305227	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	8282390	121305227	76717203	24	6389											
GOLGB1	2804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121412704	121412704	+	Silent	SNP	A	A	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	121412704	A	G	121412704	2	3	102	1	0	0	0	0	0	0	0	1	6572	214	8	3		3	GOLGB1	3	121412704	Silent	SNP	A	TCGA-B0-4712-01A-01D-1501-10	107477	121412704	76609726	25	6390											
SLC15A2	6565	broad.mit.edu;hgsc.bcm.edu	37	3	121613330	121613330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	121613330	C	G	121613330	3	3	102	1	0	0	0	0	1	0	0	0	14412	855	30	4	9	4	SLC15A2	3	121613330	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	200626	121613330	76409100	26	6391											
MYLK	4638	broad.mit.edu;hgsc.bcm.edu	37	3	123418999	123418999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	123418999	C	T	123418999	3	4	102	1	0	0	0	0	1	0	0	0	10063	913	32	2	2496	2	MYLK	3	123418999	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	1805669	123418999	74603431	27	6392											
COL6A6	131873	broad.mit.edu;hgsc.bcm.edu	37	3	130380932	130380932	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	130380932	C	G	130380932	3	3	102	1	0	0	0	0	1	0	0	0	3705	738	26	4	6416	4	COL6A6	3	130380932	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	6961933	130380932	67641498	28	6393											
P2RY12	64805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	151056476	151056476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	151056476	A	G	151056476	3	3	102	1	0	0	0	0	1	0	0	0	11356	333	12	3	874	3	P2RY12	3	151056476	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10	20675544	151056476	46965954	29	6394											
MUC4	4585	broad.mit.edu	37	3	195507324	195507324	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	195507324	C	C	195507324	3	2	102	1	0	0	0	0	1	0	0	0	9985	1368	48	4		4	MUC4	3	195507324	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	44450848	195507324	2515106	30	6395											
MUC4	4585	broad.mit.edu	37	3	195509127	195509127	+	Silent	SNP	A	G	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	195509127	G	G	195509127	2	3	102	1	0	0	0	0	0	0	0	1	9985	407	15	3		3	MUC4	3	195509127	Silent	SNP	A	TCGA-B0-4712-01A-01D-1501-10	1803	195509127	2513303	31	6396											
HTRA3	94031	broad.mit.edu	37	4	8288470	8288470	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	8288470	G	G	8288470	3	3	102	1	0	0	0	0	1	0	0	0	7462	275	10	3	678	3	HTRA3	4	8288470	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10		8288470	182865806	32	6397											
FRYL	285527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	48525026	48525026	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	48525026	G	C	48525026	3	2	102	1	0	0	0	0	1	0	0	0	6071	963	34	4	1672	4	FRYL	4	48525026	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	40236556	48525026	142629250	33	6398											
KDR	3791	broad.mit.edu;hgsc.bcm.edu	37	4	55973949	55973949	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	55973949	A	C	55973949	3	2	102	1	0	0	0	0	1	0	0	0	8146	333	12	5	2787	5	KDR	4	55973949	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10	7448923	55973949	135180327	34	6399											
REST	5978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	57797456	57797456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	57797456	C	T	57797456	3	4	102	1	0	0	0	0	1	0	0	0	13247	855	30	2	2442	2	REST	4	57797456	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	1823507	57797456	133356820	35	6400											
RAP1GDS1	5910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	99355174	99355174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	99355174	G	A	99355174	3	1	102	1	0	0	0	0	1	0	0	0	13052	971	34	2	1581	2	RAP1GDS1	4	99355174	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	41557718	99355174	91799102	36	6401	66	2									
RAP1GDS1	5910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	99355175	99355175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	99355175	C	G	99355175	3	3	102	1	0	0	0	0	1	0	0	0	13052	797	28	4	1582	4	RAP1GDS1	4	99355175	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	1	99355175	91799101	37	6402	66	2									
UTP15	84135	broad.mit.edu;ucsc.edu	37	5	72864335	72864335	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	72864335	A	A	72864335	3	1	102	1	0	0	0	0	1	0	0	0	17109	1348	47	2	284	2	UTP15	5	72864335	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10		72864335	108050925	38	6403											
CHSY3	337876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	129520692	129520692	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	129520692	G	C	129520692	3	2	102	1	0	0	0	0	1	0	0	0	3415	933	33	4	1867	4	CHSY3	5	129520692	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	56656357	129520692	51394568	39	6404											
FNIP1	96459	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131042127	131042127	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	131042127	C	G	131042127	3	3	102	1	0	0	0	0	1	0	0	0	5982	593	21	4	2649	4	FNIP1	5	131042127	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	1521435	131042127	49873133	40	6405											
SPRY4	81848	hgsc.bcm.edu	37	5	141694415	141694415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	141694415	G	A	141694415	3	1	102	1	0	0	0	0	1	0	0	0	15120	1348	47	2	644	2	SPRY4	5	141694415	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	10652288	141694415	39220845	41	6406											
CSF1R	1436	broad.mit.edu;hgsc.bcm.edu	37	5	149449864	149449864	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	149449864	G	T	149449864	4	4	102	1	0	0	0	0	0	1	0	0	3934	1275	44	4	1774	4	CSF1R	5	149449864	Nonsense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	7755449	149449864	31465396	42	6407											
NSD1	64324	broad.mit.edu;ucsc.edu	37	5	176636690	176636690	+	Silent	SNP	G	A	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	176636690	A	A	176636690	2	1	102	1	0	0	0	0	0	0	0	1	10676	1020	36	2		2	NSD1	5	176636690	Silent	SNP	G	TCGA-B0-4712-01A-01D-1501-10	27186826	176636690	4278570	43	6408											
OSBPL3	26031	hgsc.bcm.edu;ucsc.edu	37	7	24839885	24839885	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	-	24839885	C	-	24839885	7	5	102	1	0	1	0	1	0	0	0	0	11286	826	29	0	86	0	OSBPL3	7	24839885	Frame_Shift_Del	DEL	C	TCGA-B0-4712-01A-01D-1501-10		24839885	134298778	44	6409											
MRPL32	64983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	42974658	42974658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	42974658	G	A	42974658	3	1	102	1	0	0	0	0	1	0	0	0	9802	1203	42	2	241	2	MRPL32	7	42974658	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	18134773	42974658	116164005	45	6410											
PRKAR2B	5577	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	106799894	106799894	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	106799894	C	G	106799894	3	3	102	1	0	0	0	0	1	0	0	0	12516	724	25	4	1166	4	PRKAR2B	7	106799894	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	63825236	106799894	52338769	46	6411											
LRRC4	64101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127669258	127669258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	127669258	G	A	127669258	3	1	102	1	0	0	0	0	1	0	0	0	9004	1145	40	1	529	1	LRRC4	7	127669258	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	20869364	127669258	31469405	47	6412											
TNPO3	23534	broad.mit.edu;ucsc.edu	37	7	128607436	128607436	+	Missense_Mutation	SNP	C	A	A	rs188168905	by1000genomes;alternate_allele	TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	128607436	A	A	128607436	3	1	102	1	0	0	0	0	1	0	0	0	16349	884	31	4	170	4	TNPO3	7	128607436	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	938178	128607436	30531227	48	6413											
CSMD1	64478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	3253877	3253877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	3253877	G	A	3253877	3	1	102	1	0	0	0	0	1	0	0	0	3946	1261	44	2	8478	2	CSMD1	8	3253877	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10		3253877	143110145	49	6414											
PRDM14	63978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	70978469	70978469	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	70978469	C	A	70978469	5	1	102	1	0	0	0	0	0	0	1	0	12465	521	18	4	547	4	PRDM14	8	70978469	Splice_Site	SNP	C	TCGA-B0-4712-01A-01D-1501-10	67724592	70978469	75385553	50	6415											
TAF2	6873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	120814248	120814248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	120814248	A	G	120814248	3	3	102	1	0	0	0	0	1	0	0	0	15536	43	2	3	3105	3	TAF2	8	120814248	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10	49835779	120814248	25549774	51	6416											
COL22A1	169044	broad.mit.edu;hgsc.bcm.edu	37	8	139824101	139824101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	139824101	C	T	139824101	3	4	102	1	0	0	0	0	1	0	0	0	3683	681	24	2	3718	2	COL22A1	8	139824101	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	19009853	139824101	6539921	52	6417											
IL33	90865	broad.mit.edu;ucsc.edu	37	9	6252967	6252967	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	6252967	C	C	6252967	3	2	102	1	0	0	0	0	1	0	0	0	7700	942	33	4	459	4	IL33	9	6252967	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10		6252967	134960464	53	6418											
C9orf93	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	15724841	15724841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	15724841	G	A	15724841	3	1	102	1	0	0	0	0	1	0	0	0	2508	1058	37	1	1609	1	C9orf93	9	15724841	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	9471874	15724841	125488590	54	6419											
AQP7	364	hgsc.bcm.edu	37	9	33395108	33395108	+	Silent	SNP	G	G	A	rs2381003	byfrequency	TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	33395108	G	A	33395108	2	1	102	1	0	0	0	0	0	0	0	1	831	991	35	2		2	AQP7	9	33395108	Silent	SNP	G	TCGA-B0-4712-01A-01D-1501-10	17670267	33395108	107818323	55	6420											
SMC2	10592	broad.mit.edu;ucsc.edu	37	9	106864804	106864804	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	106864804	A	A	106864804	3	1	102	1	0	0	0	0	1	0	0	0	14796	912	32	4	1000	4	SMC2	9	106864804	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	73469696	106864804	34348627	56	6421											
CDK5RAP2	55755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123205921	123205921	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	123205921	T	A	123205921	3	1	102	1	0	0	0	0	1	0	0	0	3148	1435	50	5	2620	5	CDK5RAP2	9	123205921	Missense_Mutation	SNP	T	TCGA-B0-4712-01A-01D-1501-10	16341117	123205921	18007510	57	6422											
DIP2C	22982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	390776	390776	+	Silent	SNP	G	G	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	390776	G	T	390776	2	4	102	1	0	0	0	0	0	0	0	1	4531	1335	47	4		4	DIP2C	10	390776	Silent	SNP	G	TCGA-B0-4712-01A-01D-1501-10		390776	135143971	58	6423											
NRBF2	29982	hgsc.bcm.edu	37	10	64913306	64913306	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	-	64913306	T	-	64913306	7	5	102	1	0	1	0	1	0	0	0	0	10648	1403	49	0	206	0	NRBF2	10	64913306	Frame_Shift_Del	DEL	T	TCGA-B0-4712-01A-01D-1501-10	64522530	64913306	70621441	59	6424											
CRTAC1	55118	hgsc.bcm.edu	37	10	99683108	99683108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	99683108	C	A	99683108	3	1	102	1	0	0	0	0	1	0	0	0	3898	624	22	4	1562	4	CRTAC1	10	99683108	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	34769802	99683108	35851639	60	6425											
ATRNL1	26033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	116881513	116881513	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	116881513	G	C	116881513	3	2	102	1	0	0	0	0	1	0	0	0	1207	971	34	4	438	4	ATRNL1	10	116881513	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	17198405	116881513	18653234	61	6426											
DMBT1	1755	hgsc.bcm.edu	37	10	124345866	124345866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	124345866	G	C	124345866	3	2	102	1	0	0	0	0	1	0	0	0	4579	1348	47	4	1812	4	DMBT1	10	124345866	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	7464353	124345866	11188881	62	6427											
MUC6	4588	broad.mit.edu	37	11	1021245	1021245	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	1021245	T	T	1021245	3	4	102	1	0	0	0	0	1	0	0	0	9987	884	31	1	3788	1	MUC6	11	1021245	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10		1021245	133985271	63	6428											
OR51T1	401665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4903717	4903717	+	Silent	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	4903717	C	T	4903717	2	4	102	1	0	0	0	0	0	0	0	1	11113	816	29	2		2	OR51T1	11	4903717	Silent	SNP	C	TCGA-B0-4712-01A-01D-1501-10	3882472	4903717	130102799	64	6429											
SLC17A6	57084	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	22364813	22364813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	22364813	C	A	22364813	3	1	102	1	0	0	0	0	1	0	0	0	14434	506	18	4	370	4	SLC17A6	11	22364813	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	17461096	22364813	112641703	65	6430											
GLYAT	10249	broad.mit.edu;ucsc.edu	37	11	58477555	58477555	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	58477555	A	A	58477555	3	1	102	1	0	0	0	0	1	0	0	0	6486	681	24	4	319	4	GLYAT	11	58477555	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	36112742	58477555	76528961	66	6431											
MS4A6E	245802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60102420	60102420	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	60102420	G	C	60102420	3	2	102	1	0	0	0	0	1	0	0	0	9872	1377	48	4	54	4	MS4A6E	11	60102420	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	1624865	60102420	74904096	67	6432											
MTA2	9219	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62362921	62362921	+	Missense_Mutation	SNP	C	C	T	rs139421444		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	62362921	C	T	62362921	3	4	102	1	0	0	0	0	1	0	0	0	9916	565	20	2	728	2	MTA2	11	62362921	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	2260501	62362921	72643595	68	6433											
NNMT	4837	broad.mit.edu;hgsc.bcm.edu	37	11	114183068	114183068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	114183068	G	C	114183068	3	2	102	1	0	0	0	0	1	0	0	0	10516	943	33	4	674	4	NNMT	11	114183068	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	51820147	114183068	20823448	69	6434											
SLC6A12	6539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	319083	319083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	319083	T	C	319083	3	2	102	1	0	0	0	0	1	0	0	0	14688	1792	62	3	1830	3	SLC6A12	12	319083	Missense_Mutation	SNP	T	TCGA-B0-4712-01A-01D-1501-10		319083	133532812	70	6435											
UHRF1BP1L	23074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100478292	100478292	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	100478292	T	A	100478292	3	1	102	1	0	0	0	0	1	0	0	0	16981	1841	64	5	3216	5	UHRF1BP1L	12	100478292	Missense_Mutation	SNP	T	TCGA-B0-4712-01A-01D-1501-10	100159209	100478292	33373603	71	6436											
SLC17A8	246213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100813894	100813894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	100813894	C	T	100813894	3	4	102	1	0	0	0	0	1	0	0	0	14436	478	17	2	1773	2	SLC17A8	12	100813894	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	335602	100813894	33038001	72	6437											
NT5DC3	51559	broad.mit.edu;hgsc.bcm.edu	37	12	104208888	104208888	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	104208888	A	C	104208888	3	2	102	1	0	0	0	0	1	0	0	0	10699	246	9	5	1478	5	NT5DC3	12	104208888	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10	3394994	104208888	29643007	73	6438											
STARD13	90627	broad.mit.edu;hgsc.bcm.edu	37	13	33684212	33684212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	33684212	G	T	33684212	3	4	102	1	0	0	0	0	1	0	0	0	15268	1232	43	4	508	4	STARD13	13	33684212	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10		33684212	81485666	74	6439											
SUGT1	10910	broad.mit.edu;hgsc.bcm.edu	37	13	53231666	53231666	+	Splice_Site	SNP	G	G	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	53231666	G	C	53231666	5	2	102	1	0	0	0	0	0	0	1	0	15381	1014	35	4	106	4	SUGT1	13	53231666	Splice_Site	SNP	G	TCGA-B0-4712-01A-01D-1501-10	19547454	53231666	61938212	75	6440											
DOCK9	23348	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	99505670	99505670	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	99505670	A	T	99505670	3	4	102	1	0	0	0	0	1	0	0	0	4696	217	8	5	2352	5	DOCK9	13	99505670	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10	46274004	99505670	15664208	76	6441											
OR4N2	390429	broad.mit.edu	37	14	20296229	20296229	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	20296229	A	A	20296229	3	1	102	1	0	0	0	0	1	0	0	0	11084	565	20	4	624	4	OR4N2	14	20296229	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10		20296229	87053311	77	6442											
ATP5S	27109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	50779730	50779730	+	RNA	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	50779730	C	T	50779730	1	4	102	0	1	0	0	0	0	0	0	0	1163	493	17	2		2	ATP5S	14	50779730	RNA	SNP	C	TCGA-B0-4712-01A-01D-1501-10	30483501	50779730	56569810	78	6443											
FBXO34	55030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55817459	55817459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	55817459	G	T	55817459	3	4	102	1	0	0	0	0	1	0	0	0	5751	991	35	4	353	4	FBXO34	14	55817459	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	5037729	55817459	51532081	79	6444											
WARS	7453	broad.mit.edu	37	14	100809696	100809696	+	Silent	SNP	A	G	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	100809696	G	G	100809696	2	3	102	1	0	0	0	0	0	0	0	1	17261	175	7	3		3	WARS	14	100809696	Silent	SNP	A	TCGA-B0-4712-01A-01D-1501-10	44992237	100809696	6539844	80	6445											
TECPR2	9895	broad.mit.edu;hgsc.bcm.edu	37	14	102916037	102916037	+	Silent	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	102916037	G	A	102916037	2	1	102	1	0	0	0	0	0	0	0	1	15756	1103	39	1		1	TECPR2	14	102916037	Silent	SNP	G	TCGA-B0-4712-01A-01D-1501-10	2106341	102916037	4433503	81	6446											
DLL4	54567	broad.mit.edu;hgsc.bcm.edu	37	15	41223809	41223809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	41223809	G	A	41223809	3	1	102	1	0	0	0	0	1	0	0	0	4570	1087	38	1	517	1	DLL4	15	41223809	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10		41223809	61307583	82	6447											
PIF1	80119	hgsc.bcm.edu	37	15	65114484	65114484	+	Silent	SNP	G	G	A	rs8031690	bycluster;byfrequency;by1000genomes	TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	65114484	G	A	65114484	2	1	102	1	0	0	0	0	0	0	0	1	11890	1335	47	2		2	PIF1	15	65114484	Silent	SNP	G	TCGA-B0-4712-01A-01D-1501-10	23890675	65114484	37416908	83	6448											
TSC2	7249	hgsc.bcm.edu;ucsc.edu	37	16	2112006	2112006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	2112006	G	T	2112006	3	4	102	1	0	0	0	0	1	0	0	0	16618	1194	42	4	1296	4	TSC2	16	2112006	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10		2112006	88242747	84	6449											
HIRIP3	8479	broad.mit.edu;hgsc.bcm.edu	37	16	30006027	30006027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	30006027	G	A	30006027	3	1	102	1	0	0	0	0	1	0	0	0	7128	1144	40	1	1247	1	HIRIP3	16	30006027	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	27894021	30006027	60348726	85	6450											
NLRC5	84166	hgsc.bcm.edu;ucsc.edu	37	16	57065327	57065327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	57065327	T	G	57065327	3	3	102	1	0	0	0	0	1	0	0	0	10477	1551	54	5	2463	5	NLRC5	16	57065327	Missense_Mutation	SNP	T	TCGA-B0-4712-01A-01D-1501-10	27059300	57065327	33289426	86	6451											
CHD3	1107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7797756	7797756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	7797756	G	A	7797756	3	1	102	1	0	0	0	0	1	0	0	0	3328	1116	39	1	1410	1	CHD3	17	7797756	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10		7797756	73397454	87	6452											
C17orf104	284071	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42745374	42745374	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	42745374	T	G	42745374	3	3	102	1	0	0	0	0	1	0	0	0	1853	1783	62	5	2113	5	C17orf104	17	42745374	Missense_Mutation	SNP	T	TCGA-B0-4712-01A-01D-1501-10	34947618	42745374	38449836	88	6453											
EMILIN2	84034	broad.mit.edu;hgsc.bcm.edu	37	18	2891708	2891708	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	2891708	C	G	2891708	4	3	102	1	0	0	0	0	0	1	0	0	5096	838	29	4	1597	4	EMILIN2	18	2891708	Nonsense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10		2891708	75185540	89	6454											
DNMT1	1786	broad.mit.edu	37	19	10257171	10257171	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	10257171	G	G	10257171	3	3	102	1	0	0	0	0	1	0	0	0	4677	1551	54	5	2204	5	DNMT1	19	10257171	Missense_Mutation	SNP	T	TCGA-B0-4712-01A-01D-1501-10		10257171	48871812	90	6455											
EMR3	84658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14758037	14758037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	14758037	C	T	14758037	3	4	102	1	0	0	0	0	1	0	0	0	5108	536	19	1	1156	1	EMR3	19	14758037	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	4500866	14758037	44370946	91	6456											
OR7A10	390892	hgsc.bcm.edu	37	19	14952560	14952560	+	Missense_Mutation	SNP	G	G	T	rs12985894	bycluster;byfrequency;by1000genomes	TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	14952560	G	T	14952560	3	4	102	1	0	0	0	0	1	0	0	0	11221	971	34	4	803	4	OR7A10	19	14952560	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	194523	14952560	44176423	92	6457											
OR1I1	126370	hgsc.bcm.edu;ucsc.edu	37	19	15198241	15198241	+	Missense_Mutation	SNP	G	G	A	rs75278395	bycluster;byfrequency;by1000genomes	TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	15198241	G	A	15198241	3	1	102	1	0	0	0	0	1	0	0	0	10965	1087	38	1	367	1	OR1I1	19	15198241	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	245681	15198241	43930742	93	6458											
ZNF208	7757	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	22170044	22170044	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	22170044	C	G	22170044	3	3	102	1	0	0	0	0	1	0	0	0	17778	913	32	4	3650	4	ZNF208	19	22170044	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	6971803	22170044	36958939	94	6459											
PSMC4	5704	hgsc.bcm.edu	37	19	40480501	40480501	+	Silent	SNP	C	C	T	rs11542840	bycluster;byfrequency;by1000genomes	TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	40480501	C	T	40480501	2	4	102	1	0	0	0	0	0	0	0	1	12699	639	23	1		1	PSMC4	19	40480501	Silent	SNP	C	TCGA-B0-4712-01A-01D-1501-10	18310457	40480501	18648482	95	6460											
GRWD1	83743	broad.mit.edu;hgsc.bcm.edu	37	19	48954349	48954349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	48954349	C	T	48954349	3	4	102	1	0	0	0	0	1	0	0	0	6818	623	22	2	906	2	GRWD1	19	48954349	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	8473848	48954349	10174634	96	6461											
AP2A1	160	broad.mit.edu;hgsc.bcm.edu	37	19	50309986	50309986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	50309986	C	A	50309986	3	1	102	1	0	0	0	0	1	0	0	0	739	680	24	4	2999	4	AP2A1	19	50309986	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10	1355637	50309986	8818997	97	6462											
LILRB4	11006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55177763	55177763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	55177763	G	A	55177763	3	1	102	1	0	0	0	0	1	0	0	0	8800	1000	35	2	977	2	LILRB4	19	55177763	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10	4867777	55177763	3951220	98	6463											
ZNF544	27300	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58772269	58772269	+	Silent	SNP	T	T	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	58772269	T	C	58772269	2	2	102	1	0	0	0	0	0	0	0	1	17989	1509	53	3		3	ZNF544	19	58772269	Silent	SNP	T	TCGA-B0-4712-01A-01D-1501-10	3594506	58772269	356714	99	6464											
C20orf194	25943	broad.mit.edu;hgsc.bcm.edu	37	20	3355713	3355713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	T	3355713	C	T	3355713	3	4	102	1	0	0	0	0	1	0	0	0	2101	913	32	2	3196	2	C20orf194	20	3355713	Missense_Mutation	SNP	C	TCGA-B0-4712-01A-01D-1501-10		3355713	59669807	100	6465											
ARFGEF2	10564	hgsc.bcm.edu;ucsc.edu	37	20	47601976	47601982	+	Frame_Shift_Del	DEL	CAAGGTT	CAAGGTT	-	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	CAAGGTT	CAAGGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	-	47601982	CAAGGTT	-	47601976	7	5	102	1	0	1	0	1	0	0	0	0	853	710	25	0	2164	0	ARFGEF2	20	47601976	Frame_Shift_Del	DEL	CAAGGTT	TCGA-B0-4712-01A-01D-1501-10	44246263	47601976	15423544	101	6466											
PI4KA	5297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21192985	21192985	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	C	21192985	A	C	21192985	3	2	102	1	0	0	0	0	1	0	0	0	11880	246	9	5	6333	5	PI4KA	22	21192985	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10		21192985	30111581	102	6467											
CDX4	1046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	72673463	72673463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	A	72673463	G	A	72673463	3	1	102	1	0	0	0	0	1	0	0	0	3186	943	33	2	619	2	CDX4	23	72673463	Missense_Mutation	SNP	G	TCGA-B0-4712-01A-01D-1501-10		72673463	82597097	103	6468											
RBMX	27316	hgsc.bcm.edu	37	X	135957716	135957716	+	Missense_Mutation	SNP	A	A	G	rs142284545	byfrequency	TCGA-B0-4712-01A-01D-1501-10	TCGA-B0-4712-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	032b33f8-ff79-47de-8cb2-d744eab8bd1a	b7ef4bb0-2d50-47f1-80df-3aae8da90df4	G	135957716	A	G	135957716	3	3	102	1	0	0	0	0	1	0	0	0	13164	227	8	3	676	3	RBMX	23	135957716	Missense_Mutation	SNP	A	TCGA-B0-4712-01A-01D-1501-10	63284253	135957716	19312844	104	6469											
ATP13A2	23400	hgsc.bcm.edu;ucsc.edu	37	1	17332192	17332192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	17332192	G	A	17332192	3	1	103	1	0	0	0	0	1	0	0	0	1124	1294	45	2	3798	2	ATP13A2	1	17332192	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10		17332192	231918429	1	6470											
KCNN3	3782	hgsc.bcm.edu	37	1	154705507	154705507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	154705507	T	G	154705507	3	3	103	1	0	0	0	0	1	0	0	0	8087	1841	64	5	653	5	KCNN3	1	154705507	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10	137373315	154705507	94545114	2	6471											
INSRR	3645	hgsc.bcm.edu	37	1	156823640	156823640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	156823640	G	T	156823640	3	4	103	1	0	0	0	0	1	0	0	0	7781	1232	43	4	3435	4	INSRR	1	156823640	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10	2118133	156823640	92426981	3	6472											
DHX9	1660	hgsc.bcm.edu;ucsc.edu	37	1	182841491	182841491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	182841491	T	G	182841491	3	3	103	1	0	0	0	0	1	0	0	0	4518	1638	57	5	1631	5	DHX9	1	182841491	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10	26017851	182841491	66409130	4	6473											
SLC45A3	85414	hgsc.bcm.edu	37	1	205631992	205631992	+	Silent	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	205631992	C	A	205631992	2	1	103	1	0	0	0	0	0	0	0	1	14655	639	23	4		4	SLC45A3	1	205631992	Silent	SNP	C	TCGA-B0-4713-01A-01D-1361-10	22790501	205631992	43618629	5	6474											
FMN2	56776	hgsc.bcm.edu	37	1	240256745	240256745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	240256745	C	T	240256745	3	4	103	1	0	0	0	0	1	0	0	0	5957	759	27	1	1338	1	FMN2	1	240256745	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	34624753	240256745	8993876	6	6475											
LTBP1	4052	hgsc.bcm.edu	37	2	33412083	33412083	+	Silent	SNP	G	G	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	33412083	G	T	33412083	2	4	103	1	0	0	0	0	0	0	0	1	9080	1161	41	4		4	LTBP1	2	33412083	Silent	SNP	G	TCGA-B0-4713-01A-01D-1361-10		33412083	209787290	7	6476											
LRPPRC	10128	hgsc.bcm.edu	37	2	44190792	44190792	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	44190792	C	A	44190792	4	1	103	1	0	0	0	0	0	1	0	0	8972	864	30	4	2869	4	LRPPRC	2	44190792	Nonsense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	10778709	44190792	199008581	8	6477											
C2orf65	130951	hgsc.bcm.edu;ucsc.edu	37	2	74787365	74787365	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	74787365	T	G	74787365	3	3	103	1	0	0	0	0	1	0	0	0	2186	1838	64	5	269	5	C2orf65	2	74787365	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10	30596573	74787365	168412008	9	6478											
ITPRIPL1	150771	hgsc.bcm.edu;ucsc.edu	37	2	96993827	96993827	+	Silent	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	96993827	G	A	96993827	2	1	103	1	0	0	0	0	0	0	0	1	7931	962	34	2		2	ITPRIPL1	2	96993827	Silent	SNP	G	TCGA-B0-4713-01A-01D-1361-10	22206462	96993827	146205546	10	6479											
IFIH1	64135	hgsc.bcm.edu;ucsc.edu	37	2	163150172	163150172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	163150172	T	C	163150172	3	2	103	1	0	0	0	0	1	0	0	0	7527	1667	58	3	2353	3	IFIH1	2	163150172	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10	66156345	163150172	80049201	11	6480											
SCN7A	6332	hgsc.bcm.edu;ucsc.edu	37	2	167262931	167262931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	167262931	G	A	167262931	3	1	103	1	0	0	0	0	1	0	0	0	13936	1203	42	2	844	2	SCN7A	2	167262931	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10	4112759	167262931	75936442	12	6481											
ZDBF2	57683	hgsc.bcm.edu;ucsc.edu	37	2	207171516	207171516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	207171516	A	T	207171516	3	4	103	1	0	0	0	0	1	0	0	0	17611	275	10	5	2274	5	ZDBF2	2	207171516	Missense_Mutation	SNP	A	TCGA-B0-4713-01A-01D-1361-10	39908585	207171516	36027857	13	6482											
ERBB4	2066	hgsc.bcm.edu;ucsc.edu	37	2	212530139	212530139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	212530139	G	T	212530139	3	4	103	1	0	0	0	0	1	0	0	0	5211	1174	41	4	2202	4	ERBB4	2	212530139	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10	5358623	212530139	30669234	14	6483											
STK11IP	114790	hgsc.bcm.edu	37	2	220466798	220466798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	220466798	C	A	220466798	3	1	103	1	0	0	0	0	1	0	0	0	15300	710	25	4	482	4	STK11IP	2	220466798	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	7936659	220466798	22732575	15	6484											
SLC16A14	151473	hgsc.bcm.edu	37	2	230923815	230923815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	230923815	A	G	230923815	3	3	103	1	0	0	0	0	1	0	0	0	14420	449	16	3	1294	3	SLC16A14	2	230923815	Missense_Mutation	SNP	A	TCGA-B0-4713-01A-01D-1361-10	10457017	230923815	12275558	16	6485											
VHL	7428	hgsc.bcm.edu	37	3	10183734	10183734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01W-1359-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	130b417a-452b-41fc-b2d9-50b221ecc0d2	84f4e51b-ab14-48f2-a230-bb5c15195caa	A	10183734	C	A	10183734	4	1	103	1	0	0	0	0	0	1	0	0	17174	893	31	4	205	4	VHL	3	10183734	Nonsense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10		10183734	187838696	17	6486											
SCN10A	6336	hgsc.bcm.edu;ucsc.edu	37	3	38797358	38797358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	38797358	C	T	38797358	3	4	103	1	0	0	0	0	1	0	0	0	13925	913	32	2	4560	2	SCN10A	3	38797358	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	28613624	38797358	159225072	18	6487											
PTH1R	5745	hgsc.bcm.edu	37	3	46939910	46939910	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	46939910	T	A	46939910	3	1	103	1	0	0	0	0	1	0	0	0	12769	1551	54	5	608	5	PTH1R	3	46939910	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10	8142552	46939910	151082520	19	6488											
BAP1	8314	ucsc.edu	37	3	52443729	52443729	+	Splice_Site	SNP	C	C	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	C	G	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	52443729	C	G	52443729	5	3	103	1	0	0	0	0	0	0	1	0	1311	521	18	4	2185	4	BAP1	3	52443729	Splice_Site	SNP	C	TCGA-B0-4713-01A-01D-1361-10	5503819	52443729	145578701	20	6489											
ROBO2	6092	hgsc.bcm.edu	37	3	77626662	77626662	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	77626662	C	G	77626662	3	3	103	1	0	0	0	0	1	0	0	0	13527	913	32	4	2285	4	ROBO2	3	77626662	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	25182933	77626662	120395768	21	6490											
CCDC14	64770	hgsc.bcm.edu;ucsc.edu	37	3	123663774	123663774	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	123663774	A	C	123663774	3	2	103	1	0	0	0	0	1	0	0	0	2775	391	14	5	1472	5	CCDC14	3	123663774	Missense_Mutation	SNP	A	TCGA-B0-4713-01A-01D-1361-10	46037112	123663774	74358656	22	6491											
ARFIP1	27236	hgsc.bcm.edu;ucsc.edu	37	4	153784771	153784771	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	153784771	C	A	153784771	4	1	103	1	0	0	0	0	0	1	0	0	854	838	29	4	113	4	ARFIP1	4	153784771	Nonsense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10		153784771	37369505	23	6492											
ETF1	2107	hgsc.bcm.edu	37	5	137853329	137853329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	137853329	T	C	137853329	3	2	103	1	0	0	0	0	1	0	0	0	5270	1609	56	3	1022	3	ETF1	5	137853329	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10		137853329	43061931	24	6493											
PCYOX1L	78991	hgsc.bcm.edu	37	5	148747050	148747050	+	Silent	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	148747050	C	A	148747050	2	1	103	1	0	0	0	0	0	0	0	1	11616	610	22	4		4	PCYOX1L	5	148747050	Silent	SNP	C	TCGA-B0-4713-01A-01D-1361-10	10893721	148747050	32168210	25	6494											
ITK	3702	hgsc.bcm.edu;ucsc.edu	37	5	156641211	156641215	+	Frame_Shift_Del	DEL	ATAAT	ATAAT	-	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	ATAAT	ATAAT	ATAAT	-	ATAAT	ATAAT	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	-	156641215	ATAAT	-	156641211	7	5	103	1	0	1	0	1	0	0	0	0	7916	101	4	0	349	0	ITK	5	156641211	Frame_Shift_Del	DEL	ATAAT	TCGA-B0-4713-01A-01D-1361-10	7894161	156641211	24274049	26	6495											
KIAA0319	9856	hgsc.bcm.edu	37	6	24596479	24596479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	24596479	C	A	24596479	3	1	103	1	0	0	0	0	1	0	0	0	8175	825	29	4	2871	4	KIAA0319	6	24596479	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10		24596479	146518588	27	6496											
CUL9	23113	hgsc.bcm.edu	37	6	43174224	43174224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	43174224	C	T	43174224	3	4	103	1	0	0	0	0	1	0	0	0	4063	652	23	1	5286	1	CUL9	6	43174224	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	18577745	43174224	127940843	28	6497											
TRDN	10345	hgsc.bcm.edu;ucsc.edu	37	6	123539746	123539746	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	123539746	T	G	123539746	3	3	103	1	0	0	0	0	1	0	0	0	16480	1848	64	5	3	5	TRDN	6	123539746	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10	80365522	123539746	47575321	29	6498											
SYNE1	23345	hgsc.bcm.edu;ucsc.edu	37	6	152621860	152621860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	152621860	C	A	152621860	3	1	103	1	0	0	0	0	1	0	0	0	15457	680	24	4	9084	4	SYNE1	6	152621860	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	29082114	152621860	18493207	30	6499											
EIF2AK1	27102	hgsc.bcm.edu	37	7	6068611	6068611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	6068611	A	G	6068611	3	3	103	1	0	0	0	0	1	0	0	0	4998	14	1	3	523	3	EIF2AK1	7	6068611	Missense_Mutation	SNP	A	TCGA-B0-4713-01A-01D-1361-10		6068611	153070052	31	6500											
ABCA13	154664	hgsc.bcm.edu;ucsc.edu	37	7	48654937	48654937	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	48654937	T	A	48654937	3	1	103	1	0	0	0	0	1	0	0	0	31	1783	62	5	14864	5	ABCA13	7	48654937	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10	42586326	48654937	110483726	32	6501											
TMEM66	51669	hgsc.bcm.edu;ucsc.edu	37	8	29931544	29931544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	29931544	G	A	29931544	3	1	103	1	0	0	0	0	1	0	0	0	16207	971	34	2	908	2	TMEM66	8	29931544	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10		29931544	116432478	33	6502											
PGCP	0	hgsc.bcm.edu;ucsc.edu	37	8	97892144	97892144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	97892144	A	C	97892144	3	2	103	1	0	0	0	0	1	0	0	0	11793	217	8	5	770	5	PGCP	8	97892144	Missense_Mutation	SNP	A	TCGA-B0-4713-01A-01D-1361-10	67960600	97892144	48471878	34	6503											
BAI1	575	hgsc.bcm.edu	37	8	143570438	143570438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	143570438	A	C	143570438	3	2	103	1	0	0	0	0	1	0	0	0	1298	391	14	5	2549	5	BAI1	8	143570438	Missense_Mutation	SNP	A	TCGA-B0-4713-01A-01D-1361-10	45678294	143570438	2793584	35	6504											
SCRIB	23513	hgsc.bcm.edu;ucsc.edu	37	8	144877694	144877694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	144877694	G	T	144877694	3	4	103	1	0	0	0	0	1	0	0	0	13950	1232	43	4	1409	4	SCRIB	8	144877694	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10	1307256	144877694	1486328	36	6505											
PTCH1	5727	hgsc.bcm.edu;ucsc.edu	37	9	98240433	98240433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	98240433	T	G	98240433	3	3	103	1	0	0	0	0	1	0	0	0	12740	1838	64	5	3152	5	PTCH1	9	98240433	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10		98240433	42972998	37	6506											
NEBL	10529	hgsc.bcm.edu;ucsc.edu	37	10	21098771	21098771	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	21098771	C	G	21098771	3	3	103	1	0	0	0	0	1	0	0	0	10310	913	32	4	485	4	NEBL	10	21098771	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10		21098771	114435976	38	6507											
OR51S1	119692	hgsc.bcm.edu	37	11	4870047	4870047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	4870047	G	A	4870047	3	1	103	1	0	0	0	0	1	0	0	0	11112	1319	46	2	582	2	OR51S1	11	4870047	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10		4870047	130136469	39	6508											
TRIM6	117854	hgsc.bcm.edu	37	11	5632213	5632213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	5632213	G	A	5632213	3	1	103	1	0	0	0	0	1	0	0	0	16545	1232	43	2	1222	2	TRIM6	11	5632213	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10	762166	5632213	129374303	40	6509											
GIF	2694	hgsc.bcm.edu	37	11	59610539	59610539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	59610539	G	A	59610539	3	1	103	1	0	0	0	0	1	0	0	0	6383	1174	41	2	949	2	GIF	11	59610539	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10	53978326	59610539	75395977	41	6510											
RIN1	9610	hgsc.bcm.edu	37	11	66100041	66100041	+	Silent	SNP	A	A	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	66100041	A	C	66100041	2	2	103	1	0	0	0	0	0	0	0	1	13384	175	7	5		5	RIN1	11	66100041	Silent	SNP	A	TCGA-B0-4713-01A-01D-1361-10	6489502	66100041	68906475	42	6511											
RSF1	51773	hgsc.bcm.edu;ucsc.edu	37	11	77378369	77378369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	77378369	C	T	77378369	3	4	103	1	0	0	0	0	1	0	0	0	13712	835	29	2	410	2	RSF1	11	77378369	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	11278328	77378369	57628147	43	6512											
OR8D2	283160	hgsc.bcm.edu;ucsc.edu	37	11	124189235	124189235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	124189235	G	T	124189235	3	4	103	1	0	0	0	0	1	0	0	0	11239	1174	41	4	79	4	OR8D2	11	124189235	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10	46810866	124189235	10817281	44	6513											
TRHDE	29953	hgsc.bcm.edu	37	12	73056937	73056937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	73056937	G	A	73056937	3	1	103	1	0	0	0	0	1	0	0	0	16491	1059	37	1	3111	1	TRHDE	12	73056937	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10		73056937	60794958	45	6514											
PAH	5053	hgsc.bcm.edu;ucsc.edu	37	12	103246684	103246684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	103246684	A	G	103246684	3	3	103	1	0	0	0	0	1	0	0	0	11401	304	11	3	635	3	PAH	12	103246684	Missense_Mutation	SNP	A	TCGA-B0-4713-01A-01D-1361-10	30189747	103246684	30605211	46	6515											
MDGA2	161357	hgsc.bcm.edu;ucsc.edu	37	14	47613397	47613397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	47613397	G	A	47613397	3	1	103	1	0	0	0	0	1	0	0	0	9414	1000	35	2	2457	2	MDGA2	14	47613397	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10		47613397	59736143	47	6516											
GPHN	10243	hgsc.bcm.edu	37	14	67647611	67647611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	67647611	A	G	67647611	3	3	103	1	0	0	0	0	1	0	0	0	6617	159	6	3	2357	3	GPHN	14	67647611	Missense_Mutation	SNP	A	TCGA-B0-4713-01A-01D-1361-10	20034214	67647611	39701929	48	6517											
EML5	161436	hgsc.bcm.edu	37	14	89202868	89202868	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	89202868	G	C	89202868	3	2	103	1	0	0	0	0	1	0	0	0	5102	933	33	4	5192	4	EML5	14	89202868	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10	21555257	89202868	18146672	49	6518											
C14orf79	122616	hgsc.bcm.edu;ucsc.edu	37	14	105452999	105452999	+	Silent	SNP	T	T	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	105452999	T	C	105452999	2	2	103	1	0	0	0	0	0	0	0	1	1782	1596	56	3		3	C14orf79	14	105452999	Silent	SNP	T	TCGA-B0-4713-01A-01D-1361-10	16250131	105452999	1896541	50	6519											
ALDH1A3	220	hgsc.bcm.edu	37	15	101440802	101440802	+	Silent	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	101440802	C	A	101440802	2	1	103	1	0	0	0	0	0	0	0	1	492	610	22	4		4	ALDH1A3	15	101440802	Silent	SNP	C	TCGA-B0-4713-01A-01D-1361-10		101440802	1090590	51	6520											
PRRT2	112476	hgsc.bcm.edu	37	16	29825764	29825764	+	Silent	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	29825764	C	A	29825764	2	1	103	1	0	0	0	0	0	0	0	1	12620	668	24	4		4	PRRT2	16	29825764	Silent	SNP	C	TCGA-B0-4713-01A-01D-1361-10		29825764	60528989	52	6521											
NDRG4	65009	hgsc.bcm.edu	37	16	58542877	58542877	+	Silent	SNP	C	C	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	58542877	C	T	58542877	2	4	103	1	0	0	0	0	0	0	0	1	10261	564	20	2		2	NDRG4	16	58542877	Silent	SNP	C	TCGA-B0-4713-01A-01D-1361-10	28717113	58542877	31811876	53	6522											
FAM64A	54478	hgsc.bcm.edu	37	17	6348463	6348464	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	-	6348464	CG	-	6348463	7	5	103	1	0	1	0	1	0	0	0	0	5605	639	23	0	35	0	FAM64A	17	6348463	Frame_Shift_Del	DEL	CG	TCGA-B0-4713-01A-01D-1361-10		6348463	74846747	54	6523											
SYNRG	11276	hgsc.bcm.edu;ucsc.edu	37	17	35937592	35937592	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	G	35937592	T	G	35937592	3	3	103	1	0	0	0	0	1	0	0	0	15472	1792	62	5	3372	5	SYNRG	17	35937592	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10	29589129	35937592	45257618	55	6524											
SLC4A1	6521	hgsc.bcm.edu	37	17	42328876	42328876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	42328876	T	C	42328876	3	2	103	1	0	0	0	0	1	0	0	0	14663	1696	59	3	355	3	SLC4A1	17	42328876	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10	6391284	42328876	38866334	56	6525											
EME1	146956	hgsc.bcm.edu;ucsc.edu	37	17	48458125	48458125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	48458125	C	T	48458125	3	4	103	1	0	0	0	0	1	0	0	0	5090	811	28	2	1607	2	EME1	17	48458125	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	6129249	48458125	32737085	57	6526											
INSR	3643	hgsc.bcm.edu;ucsc.edu	37	19	7141807	7141807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	7141807	C	T	7141807	3	4	103	1	0	0	0	0	1	0	0	0	7780	594	21	2	1625	2	INSR	19	7141807	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10		7141807	51987176	58	6527											
ZNF493	284443	hgsc.bcm.edu	37	19	21606276	21606277	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	21606277	-	A	21606276	7	5	103	1	0	1	1	0	0	0	0	0	17956	478	17	0	892	0	ZNF493	19	21606276	Frame_Shift_Ins	INS	-	TCGA-B0-4713-01A-01D-1361-10	14464469	21606276	37522707	59	6528											
ZNF329	79673	hgsc.bcm.edu	37	19	58640668	58640668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	58640668	C	A	58640668	3	1	103	1	0	0	0	0	1	0	0	0	17859	507	18	4	1426	4	ZNF329	19	58640668	Missense_Mutation	SNP	C	TCGA-B0-4713-01A-01D-1361-10	37034392	58640668	488315	60	6529											
C20orf30	0	hgsc.bcm.edu	37	20	5081570	5081570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	5081570	T	C	5081570	3	2	103	1	0	0	0	0	1	0	0	0	2112	1667	58	3	136	3	C20orf30	20	5081570	Missense_Mutation	SNP	T	TCGA-B0-4713-01A-01D-1361-10		5081570	57943950	61	6530											
PROKR2	128674	hgsc.bcm.edu	37	20	5294761	5294761	+	Silent	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	5294761	G	A	5294761	2	1	103	1	0	0	0	0	0	0	0	1	12563	1306	46	2		2	PROKR2	20	5294761	Silent	SNP	G	TCGA-B0-4713-01A-01D-1361-10	213191	5294761	57730759	62	6531											
DSN1	79980	hgsc.bcm.edu	37	20	35395179	35395179	+	Silent	SNP	T	T	C	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	C	35395179	T	C	35395179	2	2	103	1	0	0	0	0	0	0	0	1	4782	1548	54	3		3	DSN1	20	35395179	Silent	SNP	T	TCGA-B0-4713-01A-01D-1361-10	30100418	35395179	27630341	63	6532											
ADAMTS5	11096	hgsc.bcm.edu;ucsc.edu	37	21	28327065	28327065	+	Silent	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	28327065	G	A	28327065	2	1	103	1	0	0	0	0	0	0	0	1	269	1136	40	1		1	ADAMTS5	21	28327065	Silent	SNP	G	TCGA-B0-4713-01A-01D-1361-10		28327065	19802830	64	6533											
ARHGAP6	395	hgsc.bcm.edu;ucsc.edu	37	X	11196235	11196235	+	Silent	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	11196235	G	A	11196235	2	1	103	1	0	0	0	0	0	0	0	1	887	1310	46	2		2	ARHGAP6	23	11196235	Silent	SNP	G	TCGA-B0-4713-01A-01D-1361-10		11196235	144074325	65	6534											
HUWE1	10075	hgsc.bcm.edu;ucsc.edu	37	X	53578289	53578289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	T	53578289	G	T	53578289	3	4	103	1	0	0	0	0	1	0	0	0	7468	1174	41	4	4174	4	HUWE1	23	53578289	Missense_Mutation	SNP	G	TCGA-B0-4713-01A-01D-1361-10	42382054	53578289	101692271	66	6535											
PCDH19	57526	hgsc.bcm.edu;ucsc.edu	37	X	99551677	99551677	+	Silent	SNP	G	G	A	novel		TCGA-B0-4713-01A-01D-1361-10	TCGA-B0-4713-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	130b417a-452b-41fc-b2d9-50b221ecc0d2	5a17a19b-3c02-4270-b730-1ab654e6120f	A	99551677	G	A	99551677	2	1	103	1	0	0	0	0	0	0	0	1	11521	1049	37	1		1	PCDH19	23	99551677	Silent	SNP	G	TCGA-B0-4713-01A-01D-1361-10	45973388	99551677	55718883	67	6536											
HIVEP3	59269	hgsc.bcm.edu;ucsc.edu	37	1	42045820	42045821	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	-	42045821	CT	-	42045820	7	5	104	1	0	1	0	1	0	0	0	0	7195	797	28	0	2595	0	HIVEP3	1	42045820	Frame_Shift_Del	DEL	CT	TCGA-B0-4714-01A-01D-1361-10		42045820	207204801	1	6537											
STIL	6491	hgsc.bcm.edu	37	1	47728583	47728583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	47728583	C	A	47728583	3	1	104	1	0	0	0	0	1	0	0	0	15294	855	30	4	1057	4	STIL	1	47728583	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	5682763	47728583	201522038	2	6538											
ELAVL4	1996	hgsc.bcm.edu;ucsc.edu	37	1	50610784	50610784	+	Silent	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	50610784	G	A	50610784	2	1	104	1	0	0	0	0	0	0	0	1	5054	933	33	2		2	ELAVL4	1	50610784	Silent	SNP	G	TCGA-B0-4714-01A-01D-1361-10	2882201	50610784	198639837	3	6539											
GJA8	2703	hgsc.bcm.edu	37	1	147380453	147380453	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	147380453	C	G	147380453	3	3	104	1	0	0	0	0	1	0	0	0	6412	652	23	4	373	4	GJA8	1	147380453	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	96769669	147380453	101870168	4	6540											
DEDD	9191	hgsc.bcm.edu;ucsc.edu	37	1	161094111	161094111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	161094111	G	A	161094111	3	1	104	1	0	0	0	0	1	0	0	0	4386	1000	35	2	830	2	DEDD	1	161094111	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10	13713658	161094111	88156510	5	6541											
SELE	6401	hgsc.bcm.edu	37	1	169701931	169701931	+	Silent	SNP	G	G	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	169701931	G	C	169701931	2	2	104	1	0	0	0	0	0	0	0	1	14026	929	33	4		4	SELE	1	169701931	Silent	SNP	G	TCGA-B0-4714-01A-01D-1361-10	8607820	169701931	79548690	6	6542											
WNT9A	7483	hgsc.bcm.edu	37	1	228113202	228113202	+	Silent	SNP	G	G	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	228113202	G	T	228113202	2	4	104	1	0	0	0	0	0	0	0	1	17410	1219	43	4		4	WNT9A	1	228113202	Silent	SNP	G	TCGA-B0-4714-01A-01D-1361-10	58411271	228113202	21137419	7	6543											
SDCCAG8	10806	hgsc.bcm.edu;ucsc.edu	37	1	243480195	243480195	+	Silent	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	243480195	G	A	243480195	2	1	104	1	0	0	0	0	0	0	0	1	13972	1014	35	2		2	SDCCAG8	1	243480195	Silent	SNP	G	TCGA-B0-4714-01A-01D-1361-10	15366993	243480195	5770426	8	6544											
XDH	7498	hgsc.bcm.edu	37	2	31598370	31598370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	31598370	T	C	31598370	3	2	104	1	0	0	0	0	1	0	0	0	17438	1551	54	3	2611	3	XDH	2	31598370	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10		31598370	211601003	9	6545											
PREPL	9581	hgsc.bcm.edu;ucsc.edu	37	2	44549924	44549924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	44549924	A	G	44549924	3	3	104	1	0	0	0	0	1	0	0	0	12485	362	13	3	229	3	PREPL	2	44549924	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10	12951554	44549924	198649449	10	6546											
C2orf42	54980	hgsc.bcm.edu	37	2	70408353	70408354	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	-	70408354	AA	-	70408353	7	5	104	1	0	1	0	1	0	0	0	0	2168	127	5	0	991	0	C2orf42	2	70408353	Frame_Shift_Del	DEL	AA	TCGA-B0-4714-01A-01D-1361-10	25858429	70408353	172791020	11	6547											
LONRF2	164832	hgsc.bcm.edu	37	2	100903525	100903525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	100903525	C	T	100903525	3	4	104	1	0	0	0	0	1	0	0	0	8902	521	18	2	351	2	LONRF2	2	100903525	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	30495172	100903525	142295848	12	6548											
DDX18	8886	hgsc.bcm.edu;ucsc.edu	37	2	118578857	118578857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	118578857	C	T	118578857	3	4	104	1	0	0	0	0	1	0	0	0	4347	594	21	2	649	2	DDX18	2	118578857	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	17675332	118578857	124620516	13	6549											
MCM6	4175	hgsc.bcm.edu;ucsc.edu	37	2	136608981	136608981	+	Silent	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	136608981	G	A	136608981	2	1	104	1	0	0	0	0	0	0	0	1	9398	963	34	2		2	MCM6	2	136608981	Silent	SNP	G	TCGA-B0-4714-01A-01D-1361-10	18030124	136608981	106590392	14	6550											
BAZ2B	29994	hgsc.bcm.edu;ucsc.edu	37	2	160285736	160285736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	160285736	C	G	160285736	3	3	104	1	0	0	0	0	1	0	0	0	1332	835	29	4	4384	4	BAZ2B	2	160285736	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	23676755	160285736	82913637	15	6551											
NCL	4691	hgsc.bcm.edu	37	2	232325415	232325417	+	In_Frame_Del	DEL	TCA	TCA	-	rs139777351	bycluster;by1000genomes	TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	-	232325417	TCA	-	232325415	7	5	104	1	0	1	0	1	0	0	0	0	10233	1783	62	0	1400	0	NCL	2	232325415	In_Frame_Del	DEL	TCA	TCGA-B0-4714-01A-01D-1361-10	72039679	232325415	10873958	16	6552											
CACNA2D2	9254	hgsc.bcm.edu	37	3	50513581	50513581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	50513581	G	A	50513581	3	1	104	1	0	0	0	0	1	0	0	0	2551	1086	38	1	3354	1	CACNA2D2	3	50513581	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10		50513581	147508849	17	6553											
CADM2	253559	hgsc.bcm.edu	37	3	85851255	85851255	+	Silent	SNP	A	A	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	85851255	A	C	85851255	2	2	104	1	0	0	0	0	0	0	0	1	2569	117	5	5		5	CADM2	3	85851255	Silent	SNP	A	TCGA-B0-4714-01A-01D-1361-10	35337674	85851255	112171175	18	6554											
IFT57	55081	hgsc.bcm.edu;ucsc.edu	37	3	107910441	107910441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	107910441	T	C	107910441	3	2	104	1	0	0	0	0	1	0	0	0	7569	1435	50	3	609	3	IFT57	3	107910441	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	22059186	107910441	90111989	19	6555											
ITGB5	3693	hgsc.bcm.edu	37	3	124527981	124527981	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	124527981	A	C	124527981	3	2	104	1	0	0	0	0	1	0	0	0	7905	131	5	5	1276	5	ITGB5	3	124527981	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10	16617540	124527981	73494449	20	6556											
KPNA4	3840	hgsc.bcm.edu;ucsc.edu	37	3	160249299	160249299	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	160249299	T	G	160249299	3	3	104	1	0	0	0	0	1	0	0	0	8439	1850	64	5	1279	5	KPNA4	3	160249299	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	35721318	160249299	37773131	21	6557											
C3orf21	0	hgsc.bcm.edu;ucsc.edu	37	3	194790608	194790612	+	Frame_Shift_Del	DEL	CCATG	CCATG	-	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	CCATG	CCATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	-	194790612	CCATG	-	194790608	7	5	104	1	0	1	0	1	0	0	0	0	2216	864	30	0	167	0	C3orf21	3	194790608	Frame_Shift_Del	DEL	CCATG	TCGA-B0-4714-01A-01D-1361-10	34541309	194790608	3231822	22	6558											
C4orf44	0	hgsc.bcm.edu	37	4	3254960	3254960	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	3254960	A	C	3254960	3	2	104	1	0	0	0	0	1	0	0	0	2274	304	11	5	353	5	C4orf44	4	3254960	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10		3254960	187899316	23	6559											
LIMCH1	22998	hgsc.bcm.edu;ucsc.edu	37	4	41694356	41694356	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	41694356	C	G	41694356	3	3	104	1	0	0	0	0	1	0	0	0	8804	876	31	4	3311	4	LIMCH1	4	41694356	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	38439396	41694356	149459920	24	6560											
LRRC66	339977	hgsc.bcm.edu;ucsc.edu	37	4	52864031	52864031	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	52864031	G	C	52864031	3	2	104	1	0	0	0	0	1	0	0	0	9025	933	33	4	1911	4	LRRC66	4	52864031	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10	11169675	52864031	138290245	25	6561											
SV2C	22987	hgsc.bcm.edu;ucsc.edu	37	5	75490777	75490777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	75490777	C	A	75490777	3	1	104	1	0	0	0	0	1	0	0	0	15431	768	27	4	620	4	SV2C	5	75490777	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10		75490777	105424483	26	6562											
SLC23A1	9963	hgsc.bcm.edu;ucsc.edu	37	5	138717642	138717642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	138717642	T	C	138717642	3	2	104	1	0	0	0	0	1	0	0	0	14475	1464	51	3	1609	3	SLC23A1	5	138717642	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	63226865	138717642	42197618	27	6563											
YIPF5	81555	hgsc.bcm.edu;ucsc.edu	37	5	143541805	143541805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	143541805	G	C	143541805	3	2	104	1	0	0	0	0	1	0	0	0	17493	962	34	4	193	4	YIPF5	5	143541805	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10	4824163	143541805	37373455	28	6564											
RAB24	53917	hgsc.bcm.edu;ucsc.edu	37	5	176729429	176729429	+	Silent	SNP	C	C	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	176729429	C	A	176729429	2	1	104	1	0	0	0	0	0	0	0	1	12924	581	21	4		4	RAB24	5	176729429	Silent	SNP	C	TCGA-B0-4714-01A-01D-1361-10	33187624	176729429	4185831	29	6565											
HIST1H3H	8357	hgsc.bcm.edu;ucsc.edu	37	6	27778219	27778219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	27778219	A	C	27778219	3	2	104	1	0	0	0	0	1	0	0	0	7169	72	3	5	370	5	HIST1H3H	6	27778219	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10		27778219	143336848	30	6566											
ZNF318	24149	hgsc.bcm.edu;ucsc.edu	37	6	43308576	43308576	+	Silent	SNP	A	A	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	43308576	A	T	43308576	2	4	104	1	0	0	0	0	0	0	0	1	17848	10	1	5		5	ZNF318	6	43308576	Silent	SNP	A	TCGA-B0-4714-01A-01D-1361-10	15530357	43308576	127806491	31	6567											
COL21A1	81578	hgsc.bcm.edu;ucsc.edu	37	6	55939040	55939040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	55939040	G	A	55939040	3	1	104	1	0	0	0	0	1	0	0	0	3682	1116	39	1	962	1	COL21A1	6	55939040	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10	12630464	55939040	115176027	32	6568											
EPB41L2	2037	hgsc.bcm.edu	37	6	131186756	131186756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	131186756	C	T	131186756	3	4	104	1	0	0	0	0	1	0	0	0	5155	594	21	2	280	2	EPB41L2	6	131186756	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	75247716	131186756	39928311	33	6569											
UNC93A	54346	hgsc.bcm.edu	37	6	167728774	167728774	+	Missense_Mutation	SNP	T	T	C	rs79485532	bycluster	TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	167728774	T	C	167728774	3	2	104	1	0	0	0	0	1	0	0	0	17008	1464	51	3	1238	3	UNC93A	6	167728774	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	36542018	167728774	3386293	34	6570											
DNAH11	8701	hgsc.bcm.edu	37	7	21765574	21765574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	21765574	T	A	21765574	3	1	104	1	0	0	0	0	1	0	0	0	4601	1841	64	5	7612	5	DNAH11	7	21765574	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10		21765574	137373089	35	6571											
CASD1	64921	hgsc.bcm.edu;ucsc.edu	37	7	94163037	94163037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	94163037	A	G	94163037	3	3	104	1	0	0	0	0	1	0	0	0	2666	449	16	3	577	3	CASD1	7	94163037	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10	72397463	94163037	64975626	36	6572											
MSR1	4481	hgsc.bcm.edu;ucsc.edu	37	8	16026149	16026149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	16026149	G	T	16026149	3	4	104	1	0	0	0	0	1	0	0	0	9893	1299	45	4	983	4	MSR1	8	16026149	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10		16026149	130337873	37	6573											
ATP6V0D2	245972	hgsc.bcm.edu	37	8	87153748	87153748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	87153748	A	T	87153748	3	4	104	1	0	0	0	0	1	0	0	0	1174	14	1	5	565	5	ATP6V0D2	8	87153748	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10	71127599	87153748	59210274	38	6574											
RAPGEF1	2889	hgsc.bcm.edu;ucsc.edu	37	9	134514117	134514117	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	134514117	A	T	134514117	3	4	104	1	0	0	0	0	1	0	0	0	13056	275	10	5	2808	5	RAPGEF1	9	134514117	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10		134514117	6699314	39	6575											
FBXW5	54461	hgsc.bcm.edu	37	9	139837370	139837370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	139837370	G	A	139837370	3	1	104	1	0	0	0	0	1	0	0	0	5775	1059	37	1	1347	1	FBXW5	9	139837370	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10	5323253	139837370	1376061	40	6576											
WAC	51322	hgsc.bcm.edu;ucsc.edu	37	10	28872359	28872359	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	28872359	C	G	28872359	3	3	104	1	0	0	0	0	1	0	0	0	17259	477	17	4	320	4	WAC	10	28872359	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10		28872359	106662388	41	6577											
PCDH15	65217	hgsc.bcm.edu	37	10	55566692	55566692	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	55566692	T	G	55566692	3	3	104	1	0	0	0	0	1	0	0	0	11518	1850	64	5	356	5	PCDH15	10	55566692	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	26694333	55566692	79968055	42	6578											
TECTB	6975	hgsc.bcm.edu	37	10	114063068	114063068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	114063068	T	C	114063068	3	2	104	1	0	0	0	0	1	0	0	0	15760	1419	49	3	1026	3	TECTB	10	114063068	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	58496376	114063068	21471679	43	6579											
CDHR5	53841	hgsc.bcm.edu	37	11	618013	618013	+	Missense_Mutation	SNP	C	C	T	rs7108757	bycluster;byfrequency;by1000genomes	TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	618013	C	T	618013	3	4	104	1	0	0	0	0	1	0	0	0	3124	768	27	1	486	1	CDHR5	11	618013	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10		618013	134388503	44	6580											
NAT10	55226	hgsc.bcm.edu	37	11	34160752	34160752	+	Silent	SNP	A	A	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	34160752	A	T	34160752	2	4	104	1	0	0	0	0	0	0	0	1	10181	291	11	5		5	NAT10	11	34160752	Silent	SNP	A	TCGA-B0-4714-01A-01D-1361-10	33542739	34160752	100845764	45	6581											
CCDC82	79780	hgsc.bcm.edu	37	11	96104275	96104275	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	96104275	T	A	96104275	4	1	104	1	0	0	0	0	0	1	0	0	2858	1850	64	5	539	5	CCDC82	11	96104275	Nonsense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	61943523	96104275	38902241	46	6582											
BIRC2	329	hgsc.bcm.edu;ucsc.edu	37	11	102239106	102239106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	102239106	C	A	102239106	3	1	104	1	0	0	0	0	1	0	0	0	1435	913	32	4	1211	4	BIRC2	11	102239106	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	6134831	102239106	32767410	47	6583											
DDX6	1656	hgsc.bcm.edu;ucsc.edu	37	11	118638975	118638975	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	118638975	A	C	118638975	3	2	104	1	0	0	0	0	1	0	0	0	4379	101	4	5	1032	5	DDX6	11	118638975	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10	16399869	118638975	16367541	48	6584											
ITFG2	55846	hgsc.bcm.edu;ucsc.edu	37	12	2932068	2932068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	2932068	T	C	2932068	3	2	104	1	0	0	0	0	1	0	0	0	7877	1609	56	3	1095	3	ITFG2	12	2932068	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10		2932068	130919827	49	6585											
PZP	5858	hgsc.bcm.edu	37	12	9318749	9318749	+	Silent	SNP	A	A	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	9318749	A	G	9318749	2	3	104	1	0	0	0	0	0	0	0	1	12882	456	16	3		3	PZP	12	9318749	Silent	SNP	A	TCGA-B0-4714-01A-01D-1361-10	6386681	9318749	124533146	50	6586											
PIK3C2G	5288	hgsc.bcm.edu;ucsc.edu	37	12	18552697	18552697	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	18552697	A	T	18552697	3	4	104	1	0	0	0	0	1	0	0	0	11918	246	9	5	2162	5	PIK3C2G	12	18552697	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10	9233948	18552697	115299198	51	6587											
DENND5B	160518	hgsc.bcm.edu;ucsc.edu	37	12	31540692	31540692	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	31540692	A	T	31540692	3	4	104	1	0	0	0	0	1	0	0	0	4439	98	4	5	158	5	DENND5B	12	31540692	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10	12987995	31540692	102311203	52	6588											
FREM2	341640	hgsc.bcm.edu	37	13	39425218	39425218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	39425218	C	T	39425218	3	4	104	1	0	0	0	0	1	0	0	0	6052	913	32	2	6753	2	FREM2	13	39425218	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10		39425218	75744660	53	6589											
TTLL5	23093	hgsc.bcm.edu;ucsc.edu	37	14	76238174	76238174	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	76238174	G	C	76238174	3	2	104	1	0	0	0	0	1	0	0	0	16742	1203	42	4	2191	4	TTLL5	14	76238174	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10		76238174	31111366	54	6590											
PRTG	283659	hgsc.bcm.edu;ucsc.edu	37	15	55912246	55912246	+	Silent	SNP	C	C	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	55912246	C	G	55912246	2	3	104	1	0	0	0	0	0	0	0	1	12648	465	17	4		4	PRTG	15	55912246	Silent	SNP	C	TCGA-B0-4714-01A-01D-1361-10		55912246	46619146	55	6591											
UBFD1	56061	hgsc.bcm.edu	37	16	23573998	23573998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	23573998	A	G	23573998	3	3	104	1	0	0	0	0	1	0	0	0	16896	14	1	3	701	3	UBFD1	16	23573998	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10		23573998	66780755	56	6592											
ALDOA	226	hgsc.bcm.edu;ucsc.edu	37	16	30080933	30080933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	30080933	T	G	30080933	3	3	104	1	0	0	0	0	1	0	0	0	507	1461	51	5	760	5	ALDOA	16	30080933	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	6506935	30080933	60273820	57	6593											
CNOT1	23019	hgsc.bcm.edu	37	16	58589196	58589196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	58589196	C	T	58589196	3	4	104	1	0	0	0	0	1	0	0	0	3619	478	17	2	4618	2	CNOT1	16	58589196	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	28508263	58589196	31765557	58	6594											
CDH1	999	hgsc.bcm.edu;ucsc.edu	37	16	68862122	68862122	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	68862122	T	A	68862122	3	1	104	1	0	0	0	0	1	0	0	0	3097	1667	58	5	2264	5	CDH1	16	68862122	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	10272926	68862122	21492631	59	6595											
PLD2	5338	hgsc.bcm.edu	37	17	4711105	4711105	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	4711105	A	T	4711105	3	4	104	1	0	0	0	0	1	0	0	0	12053	275	10	5	40	5	PLD2	17	4711105	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10		4711105	76484105	60	6596											
PLD2	5338	hgsc.bcm.edu;ucsc.edu	37	17	4722784	4722784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	4722784	T	C	4722784	3	2	104	1	0	0	0	0	1	0	0	0	12053	1580	55	3	2455	3	PLD2	17	4722784	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	11679	4722784	76472426	61	6597											
SAT2	112483	hgsc.bcm.edu	37	17	7529914	7529914	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	7529914	A	C	7529914	3	2	104	1	0	0	0	0	1	0	0	0	13865	188	7	5	152	5	SAT2	17	7529914	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10	2807130	7529914	73665296	62	6598											
SOCS7	30837	hgsc.bcm.edu	37	17	36523866	36523866	+	Silent	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	36523866	T	C	36523866	2	2	104	1	0	0	0	0	0	0	0	1	14932	1712	60	3		3	SOCS7	17	36523866	Silent	SNP	T	TCGA-B0-4714-01A-01D-1361-10	28993952	36523866	44671344	63	6599											
KRT15	3866	hgsc.bcm.edu	37	17	39672246	39672246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	39672246	T	C	39672246	3	2	104	1	0	0	0	0	1	0	0	0	8459	1841	64	3	469	3	KRT15	17	39672246	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	3148380	39672246	41522964	64	6600											
C17orf46	0	hgsc.bcm.edu;ucsc.edu	37	17	43333216	43333216	+	Silent	SNP	G	G	T	rs148278717	alternate_allele	TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	43333216	G	T	43333216	2	4	104	1	0	0	0	0	0	0	0	1	1859	1103	39	4		4	C17orf46	17	43333216	Silent	SNP	G	TCGA-B0-4714-01A-01D-1361-10	3660970	43333216	37861994	65	6601											
MBTD1	54799	hgsc.bcm.edu;ucsc.edu	37	17	49281212	49281212	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	49281212	A	C	49281212	3	2	104	1	0	0	0	0	1	0	0	0	9367	246	9	5	1247	5	MBTD1	17	49281212	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10	5947996	49281212	31913998	66	6602											
SERPINB4	6318	hgsc.bcm.edu	37	18	61306561	61306561	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	61306561	G	C	61306561	3	2	104	1	0	0	0	0	1	0	0	0	14116	942	33	4	554	4	SERPINB4	18	61306561	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10		61306561	16770687	67	6603											
INSR	3643	hgsc.bcm.edu	37	19	7184487	7184487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	7184487	A	G	7184487	3	3	104	1	0	0	0	0	1	0	0	0	7780	391	14	3	3414	3	INSR	19	7184487	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10		7184487	51944496	68	6604											
CEBPA	1050	hgsc.bcm.edu	37	19	33792421	33792421	+	Silent	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	33792421	G	A	33792421	2	1	104	1	0	0	0	0	0	0	0	1	3201	1074	38	1		1	CEBPA	19	33792421	Silent	SNP	G	TCGA-B0-4714-01A-01D-1361-10	26607934	33792421	25336562	69	6605											
RASGRP4	115727	hgsc.bcm.edu	37	19	38907761	38907761	+	Silent	SNP	C	C	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	38907761	C	A	38907761	2	1	104	1	0	0	0	0	0	0	0	1	13090	610	22	4		4	RASGRP4	19	38907761	Silent	SNP	C	TCGA-B0-4714-01A-01D-1361-10	5115340	38907761	20221222	70	6606											
LTBP4	8425	hgsc.bcm.edu	37	19	41119376	41119376	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	41119376	C	G	41119376	3	3	104	1	0	0	0	0	1	0	0	0	9083	855	30	4	3070	4	LTBP4	19	41119376	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10	2211615	41119376	18009607	71	6607											
ELSPBP1	64100	hgsc.bcm.edu;ucsc.edu	37	19	48523091	48523091	+	Silent	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	48523091	G	A	48523091	2	1	104	1	0	0	0	0	0	0	0	1	5085	933	33	2		2	ELSPBP1	19	48523091	Silent	SNP	G	TCGA-B0-4714-01A-01D-1361-10	7403715	48523091	10605892	72	6608											
SLC27A5	10998	hgsc.bcm.edu;ucsc.edu	37	19	59012065	59012065	+	Silent	SNP	C	C	T	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	T	59012065	C	T	59012065	2	4	104	1	0	0	0	0	0	0	0	1	14542	680	24	2		2	SLC27A5	19	59012065	Silent	SNP	C	TCGA-B0-4714-01A-01D-1361-10	10488974	59012065	116918	73	6609											
PROCR	10544	hgsc.bcm.edu	37	20	33764589	33764589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	G	33764589	C	G	33764589	3	3	104	1	0	0	0	0	1	0	0	0	12557	854	30	4	704	4	PROCR	20	33764589	Missense_Mutation	SNP	C	TCGA-B0-4714-01A-01D-1361-10		33764589	29260931	74	6610											
PCNT	5116	hgsc.bcm.edu	37	21	47831209	47831209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	47831209	A	C	47831209	3	2	104	1	0	0	0	0	1	0	0	0	11597	130	5	5	5332	5	PCNT	21	47831209	Missense_Mutation	SNP	A	TCGA-B0-4714-01A-01D-1361-10		47831209	298686	75	6611											
GPR173	54328	hgsc.bcm.edu	37	X	53106687	53106687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	53106687	T	C	53106687	3	2	104	1	0	0	0	0	1	0	0	0	6678	1841	64	3	886	3	GPR173	23	53106687	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10		53106687	102163873	76	6612											
KIAA1210	57481	hgsc.bcm.edu	37	X	118284272	118284272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	118284272	G	A	118284272	3	1	104	1	0	0	0	0	1	0	0	0	8221	1232	43	2	4914	2	KIAA1210	23	118284272	Missense_Mutation	SNP	G	TCGA-B0-4714-01A-01D-1361-10	65177585	118284272	36986288	77	6613											
BCAP31	10134	hgsc.bcm.edu	37	X	152981069	152981069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	C	152981069	T	C	152981069	3	2	104	1	0	0	0	0	1	0	0	0	1347	1551	54	3	491	3	BCAP31	23	152981069	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01D-1361-10	34696797	152981069	2289491	78	6614											
UTY	7404	hgsc.bcm.edu	37	Y	15467194	15467195	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-4714-01A-01D-1361-10	TCGA-B0-4714-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cbfc24fd-bbd6-4015-a74c-3ed78c416869	a6f5f871-a525-49e2-93a9-681b49b38934	A	15467195	-	A	15467194	7	5	104	1	0	1	1	0	0	0	0	0	17119	478	17	0	2903	0	UTY	24	15467194	Frame_Shift_Ins	INS	-	TCGA-B0-4714-01A-01D-1361-10		15467194	43906372	79	6615											
VHL	7428	hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	A	rs5030807	bycluster	TCGA-B0-4714-01A-01W-1359-10	TCGA-B0-4714-11A-01D-2279-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	c67e9881-26a3-412e-aeb4-059d410183a1	0f9e3ab6-6f54-4b0a-9f8a-c1f0b29f1c7d	A	10183797	T	A	10183797	3	1	105	1	0	0	0	0	1	0	0	0	17174	1551	54	5	268	5	VHL	3	10183797	Missense_Mutation	SNP	T	TCGA-B0-4714-01A-01W-1359-10		10183797	187838633	1	6616											
C1orf201	0	hgsc.bcm.edu;ucsc.edu	37	1	24710488	24710488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	24710488	A	T	24710488	3	4	106	1	0	0	0	0	1	0	0	0	2029	446	16	5	833	5	C1orf201	1	24710488	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10		24710488	224540133	1	6617											
NBPF7	343505	hgsc.bcm.edu	37	1	120384017	120384017	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	120384017	A	T	120384017	3	4	106	1	0	0	0	0	1	0	0	0	10205	304	11	5	743	5	NBPF7	1	120384017	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	95673529	120384017	128866604	2	6618											
PARP1	142	hgsc.bcm.edu	37	1	226566974	226566974	+	Silent	SNP	T	T	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	226566974	T	A	226566974	2	1	106	1	0	0	0	0	0	0	0	1	11461	1681	58	5		5	PARP1	1	226566974	Silent	SNP	T	TCGA-B0-4718-01A-01D-1361-10	106182957	226566974	22683647	3	6619											
SIPA1L2	57568	hgsc.bcm.edu	37	1	232650234	232650234	+	Silent	SNP	T	T	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	232650234	T	G	232650234	2	3	106	1	0	0	0	0	0	0	0	1	14343	1567	55	5		5	SIPA1L2	1	232650234	Silent	SNP	T	TCGA-B0-4718-01A-01D-1361-10	6083260	232650234	16600387	4	6620											
THADA	63892	hgsc.bcm.edu;ucsc.edu	37	2	43735802	43735802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	43735802	A	C	43735802	3	2	106	1	0	0	0	0	1	0	0	0	15852	242	9	5	2433	5	THADA	2	43735802	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10		43735802	199463571	5	6621											
USP34	9736	hgsc.bcm.edu;ucsc.edu	37	2	61441707	61441707	+	Silent	SNP	G	G	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	61441707	G	A	61441707	2	1	106	1	0	0	0	0	0	0	0	1	17077	991	35	2		2	USP34	2	61441707	Silent	SNP	G	TCGA-B0-4718-01A-01D-1361-10	17705905	61441707	181757666	6	6622											
CCDC93	54520	hgsc.bcm.edu;ucsc.edu	37	2	118732771	118732771	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	118732771	G	C	118732771	3	2	106	1	0	0	0	0	1	0	0	0	2874	971	34	4	1216	4	CCDC93	2	118732771	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	57291064	118732771	124466602	7	6623			1	13		2	2	27	G		6.046966e-05
CCDC93	54520	hgsc.bcm.edu;ucsc.edu	37	2	118732797	118732797	+	Silent	SNP	G	G	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	118732797	G	T	118732797	2	4	106	1	0	0	0	0	0	0	0	1	2874	1219	43	4		4	CCDC93	2	118732797	Silent	SNP	G	TCGA-B0-4718-01A-01D-1361-10	26	118732797	124466576	8	6624			1	13		2	2	27	G		6.046966e-05
GLI2	2736	hgsc.bcm.edu	37	2	121708840	121708840	+	Silent	SNP	C	C	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	121708840	C	T	121708840	2	4	106	1	0	0	0	0	0	0	0	1	6445	738	26	2		2	GLI2	2	121708840	Silent	SNP	C	TCGA-B0-4718-01A-01D-1361-10	2976043	121708840	121490533	9	6625											
CYBRD1	79901	hgsc.bcm.edu	37	2	172409900	172409900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	172409900	T	C	172409900	3	2	106	1	0	0	0	0	1	0	0	0	4136	1841	64	3	457	3	CYBRD1	2	172409900	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10	50701060	172409900	70789473	10	6626											
ABCA12	26154	hgsc.bcm.edu	37	2	215845228	215845228	+	Silent	SNP	G	G	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	215845228	G	A	215845228	2	1	106	1	0	0	0	0	0	0	0	1	30	1252	44	2		2	ABCA12	2	215845228	Silent	SNP	G	TCGA-B0-4718-01A-01D-1361-10	43435328	215845228	27354145	11	6627											
C3orf10	0	hgsc.bcm.edu	37	3	10167959	10167959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	10167959	A	C	10167959	3	2	106	1	0	0	0	0	1	0	0	0	2209	15	1	5	218	5	C3orf10	3	10167959	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10		10167959	187854471	12	6628											
SETD2	29072	hgsc.bcm.edu	37	3	47155365	47155365	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	47155365	C	A	47155365	5	1	106	1	0	0	0	0	0	0	1	0	14144	550	19	4	3046	4	SETD2	3	47155365	Splice_Site	SNP	C	TCGA-B0-4718-01A-01D-1361-10	36987406	47155365	150867065	13	6629											
PBRM1	55193	ucsc.edu	37	3	52643806	52643806	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	T	-	T	T	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	-	52643806	T	-	52643806	7	5	106	1	0	1	0	1	0	0	0	0	11498	1406	49	0	2870	0	PBRM1	3	52643806	Frame_Shift_Del	DEL	T	TCGA-B0-4718-01A-01D-1361-10	5488441	52643806	145378624	14	6630											
SLC25A26	115286	hgsc.bcm.edu	37	3	66428112	66428112	+	Splice_Site	SNP	A	A	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	66428112	A	C	66428112	5	2	106	1	0	0	0	0	0	0	1	0	14502	434	15	5	546	5	SLC25A26	3	66428112	Splice_Site	SNP	A	TCGA-B0-4718-01A-01D-1361-10	13784306	66428112	131594318	15	6631											
POLQ	10721	hgsc.bcm.edu	37	3	121158955	121158955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	121158955	G	T	121158955	3	4	106	1	0	0	0	0	1	0	0	0	12215	1299	45	4	515	4	POLQ	3	121158955	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	54730843	121158955	76863475	16	6632											
ZBBX	79740	hgsc.bcm.edu	37	3	166960361	166960361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	166960361	T	C	166960361	3	2	106	1	0	0	0	0	1	0	0	0	17528	1744	61	3	202	3	ZBBX	3	166960361	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10	45801406	166960361	31062069	17	6633											
SLC25A4	291	hgsc.bcm.edu	37	4	186067039	186067039	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	186067039	C	G	186067039	3	3	106	1	0	0	0	0	1	0	0	0	14517	855	30	4	735	4	SLC25A4	4	186067039	Missense_Mutation	SNP	C	TCGA-B0-4718-01A-01D-1361-10		186067039	5087237	18	6634											
AHRR	57491	hgsc.bcm.edu;ucsc.edu	37	5	413518	413518	+	Silent	SNP	A	A	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	413518	A	G	413518	2	3	106	1	0	0	0	0	0	0	0	1	417	117	5	3		3	AHRR	5	413518	Silent	SNP	A	TCGA-B0-4718-01A-01D-1361-10		413518	180501742	19	6635											
GRIA1	2890	hgsc.bcm.edu;ucsc.edu	37	5	153149729	153149729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	153149729	G	A	153149729	3	1	106	1	0	0	0	0	1	0	0	0	6774	1014	35	2	2074	2	GRIA1	5	153149729	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	152736211	153149729	27765531	20	6636											
FGFR4	2264	hgsc.bcm.edu;ucsc.edu	37	5	176516674	176516674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	176516674	C	T	176516674	3	4	106	1	0	0	0	0	1	0	0	0	5875	739	26	2	73	2	FGFR4	5	176516674	Missense_Mutation	SNP	C	TCGA-B0-4718-01A-01D-1361-10	23366945	176516674	4398586	21	6637											
LRRC16A	55604	hgsc.bcm.edu;ucsc.edu	37	6	25538187	25538187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	25538187	G	T	25538187	3	4	106	1	0	0	0	0	1	0	0	0	8978	1319	46	4	2270	4	LRRC16A	6	25538187	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10		25538187	145576880	22	6638											
PTK7	5754	hgsc.bcm.edu;ucsc.edu	37	6	43109480	43109480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	43109480	G	T	43109480	3	4	106	1	0	0	0	0	1	0	0	0	12776	1087	38	4	1735	4	PTK7	6	43109480	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	17571293	43109480	128005587	23	6639											
SAMD3	154075	hgsc.bcm.edu;ucsc.edu	37	6	130505739	130505739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	130505739	C	A	130505739	3	1	106	1	0	0	0	0	1	0	0	0	13833	797	28	4	1193	4	SAMD3	6	130505739	Missense_Mutation	SNP	C	TCGA-B0-4718-01A-01D-1361-10	87396259	130505739	40609328	24	6640											
C6orf211	79624	hgsc.bcm.edu	37	6	151790069	151790069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	151790069	C	T	151790069	3	4	106	1	0	0	0	0	1	0	0	0	2356	855	30	2	1168	2	C6orf211	6	151790069	Missense_Mutation	SNP	C	TCGA-B0-4718-01A-01D-1361-10	21284330	151790069	19324998	25	6641											
POM121C	100101267	hgsc.bcm.edu	37	7	75055733	75055733	+	Silent	SNP	G	G	C	rs2429596		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	75055733	G	C	75055733	2	2	106	1	0	0	0	0	0	0	0	1	12247	929	33	4		4	POM121C	7	75055733	Silent	SNP	G	TCGA-B0-4718-01A-01D-1361-10		75055733	84082930	26	6642											
CBLL1	79872	hgsc.bcm.edu;ucsc.edu	37	7	107393906	107393906	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	107393906	C	G	107393906	3	3	106	1	0	0	0	0	1	0	0	0	2705	796	28	4	242	4	CBLL1	7	107393906	Missense_Mutation	SNP	C	TCGA-B0-4718-01A-01D-1361-10	32338173	107393906	51744757	27	6643											
LPL	4023	hgsc.bcm.edu;ucsc.edu	37	8	19819627	19819627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	19819627	G	A	19819627	3	1	106	1	0	0	0	0	1	0	0	0	8928	1275	44	2	1358	2	LPL	8	19819627	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10		19819627	126544395	28	6644											
PLAT	5327	hgsc.bcm.edu;ucsc.edu	37	8	42046557	42046557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	42046557	A	G	42046557	3	3	106	1	0	0	0	0	1	0	0	0	12028	449	16	3	1584	3	PLAT	8	42046557	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	22226930	42046557	104317465	29	6645											
CDK20	23552	hgsc.bcm.edu	37	9	90585696	90585696	+	Silent	SNP	G	G	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	90585696	G	T	90585696	2	4	106	1	0	0	0	0	0	0	0	1	3139	1335	47	4		4	CDK20	9	90585696	Silent	SNP	G	TCGA-B0-4718-01A-01D-1361-10		90585696	50627735	30	6646											
PTCH1	5727	hgsc.bcm.edu	37	9	98231217	98231217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	98231217	G	T	98231217	3	4	106	1	0	0	0	0	1	0	0	0	12740	1232	43	4	2317	4	PTCH1	9	98231217	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	7645521	98231217	42982214	31	6647											
ROD1	0	hgsc.bcm.edu;ucsc.edu	37	9	114993689	114993689	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	114993689	A	C	114993689	3	2	106	1	0	0	0	0	1	0	0	0	13532	333	12	5	569	5	ROD1	9	114993689	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	16762472	114993689	26219742	32	6648											
PARD3	56288	hgsc.bcm.edu;ucsc.edu	37	10	34671492	34671492	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	34671492	T	A	34671492	3	1	106	1	0	0	0	0	1	0	0	0	11450	1550	54	5	2798	5	PARD3	10	34671492	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10		34671492	100863255	33	6649											
ATRNL1	26033	hgsc.bcm.edu;ucsc.edu	37	10	117075206	117075206	+	Silent	SNP	C	C	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	117075206	C	T	117075206	2	4	106	1	0	0	0	0	0	0	0	1	1207	581	21	2		2	ATRNL1	10	117075206	Silent	SNP	C	TCGA-B0-4718-01A-01D-1361-10	82403714	117075206	18459541	34	6650											
DMBT1	1755	hgsc.bcm.edu	37	10	124358420	124358420	+	Silent	SNP	C	C	G	rs2277242	bycluster;byfrequency;by1000genomes	TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	124358420	C	G	124358420	2	3	106	1	0	0	0	0	0	0	0	1	4579	871	31	4		4	DMBT1	10	124358420	Silent	SNP	C	TCGA-B0-4718-01A-01D-1361-10	7283214	124358420	11176327	35	6651											
CHID1	66005	hgsc.bcm.edu;ucsc.edu	37	11	902972	902972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	902972	T	C	902972	3	2	106	1	0	0	0	0	1	0	0	0	3347	1406	49	3	974	3	CHID1	11	902972	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10		902972	134103544	36	6652											
DNHD1	144132	hgsc.bcm.edu	37	11	6584780	6584780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	6584780	G	A	6584780	3	1	106	1	0	0	0	0	1	0	0	0	4670	1291	45	2	9957	2	DNHD1	11	6584780	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	5681808	6584780	128421736	37	6653											
USH1C	10083	hgsc.bcm.edu	37	11	17523513	17523513	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	17523513	A	C	17523513	4	2	106	1	0	0	0	0	0	1	0	0	17046	224	8	5	528	5	USH1C	11	17523513	Nonsense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	10938733	17523513	117483003	38	6654											
FSHB	2488	hgsc.bcm.edu;ucsc.edu	37	11	30253599	30253599	+	Silent	SNP	C	C	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	30253599	C	T	30253599	2	4	106	1	0	0	0	0	0	0	0	1	6079	805	28	2		2	FSHB	11	30253599	Silent	SNP	C	TCGA-B0-4718-01A-01D-1361-10	12730086	30253599	104752917	39	6655											
VWCE	220001	hgsc.bcm.edu	37	11	61053852	61053852	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	61053852	C	G	61053852	3	3	106	1	0	0	0	0	1	0	0	0	17257	922	32	4	2456	4	VWCE	11	61053852	Missense_Mutation	SNP	C	TCGA-B0-4718-01A-01D-1361-10	30800253	61053852	73952664	40	6656											
CLEC1A	51267	hgsc.bcm.edu	37	12	10225998	10225998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	10225998	A	G	10225998	3	3	106	1	0	0	0	0	1	0	0	0	3507	275	10	3	294	3	CLEC1A	12	10225998	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10		10225998	123625897	41	6657											
BCL2L14	79370	hgsc.bcm.edu;ucsc.edu	37	12	12232325	12232325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	12232325	A	T	12232325	3	4	106	1	0	0	0	0	1	0	0	0	1372	391	14	5	88	5	BCL2L14	12	12232325	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	2006327	12232325	121619570	42	6658											
PRPF40B	25766	hgsc.bcm.edu;ucsc.edu	37	12	50029153	50029153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	50029153	C	T	50029153	3	4	106	1	0	0	0	0	1	0	0	0	12582	710	25	2	1156	2	PRPF40B	12	50029153	Missense_Mutation	SNP	C	TCGA-B0-4718-01A-01D-1361-10	37796828	50029153	83822742	43	6659											
XRCC6BP1	91419	hgsc.bcm.edu;ucsc.edu	37	12	58347427	58347427	+	Silent	SNP	C	C	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	58347427	C	T	58347427	2	4	106	1	0	0	0	0	0	0	0	1	17470	813	29	2		2	XRCC6BP1	12	58347427	Silent	SNP	C	TCGA-B0-4718-01A-01D-1361-10	8318274	58347427	75504468	44	6660											
E2F7	144455	hgsc.bcm.edu;ucsc.edu	37	12	77426862	77426862	+	Silent	SNP	A	A	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	77426862	A	G	77426862	2	3	106	1	0	0	0	0	0	0	0	1	4874	175	7	3		3	E2F7	12	77426862	Silent	SNP	A	TCGA-B0-4718-01A-01D-1361-10	19079435	77426862	56425033	45	6661											
E2F7	144455	hgsc.bcm.edu;ucsc.edu	37	12	77427723	77427723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	77427723	T	C	77427723	3	2	106	1	0	0	0	0	1	0	0	0	4874	1464	51	3	1536	3	E2F7	12	77427723	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10	861	77427723	56424172	46	6662											
ANAPC7	51434	hgsc.bcm.edu	37	12	110820691	110820691	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	110820691	A	T	110820691	3	4	106	1	0	0	0	0	1	0	0	0	606	14	1	5	829	5	ANAPC7	12	110820691	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	33392968	110820691	23031204	47	6663											
GPR133	283383	hgsc.bcm.edu;ucsc.edu	37	12	131488769	131488769	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	131488769	T	A	131488769	3	1	106	1	0	0	0	0	1	0	0	0	6650	1783	62	5	1225	5	GPR133	12	131488769	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10	20668078	131488769	2363126	48	6664											
EP400	57634	hgsc.bcm.edu	37	12	132512584	132512584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	132512584	A	G	132512584	3	3	106	1	0	0	0	0	1	0	0	0	5151	14	1	3	5231	3	EP400	12	132512584	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	1023815	132512584	1339311	49	6665											
PARP4	143	hgsc.bcm.edu;ucsc.edu	37	13	25074499	25074499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	25074499	C	T	25074499	3	4	106	1	0	0	0	0	1	0	0	0	11470	710	25	2	4942	2	PARP4	13	25074499	Missense_Mutation	SNP	C	TCGA-B0-4718-01A-01D-1361-10		25074499	90095379	50	6666											
RNF17	56163	hgsc.bcm.edu;ucsc.edu	37	13	25367463	25367463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	25367463	A	T	25367463	3	4	106	1	0	0	0	0	1	0	0	0	13474	101	4	5	1257	5	RNF17	13	25367463	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	292964	25367463	89802415	51	6667											
TMEM62	80021	hgsc.bcm.edu;ucsc.edu	37	15	43476766	43476766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	43476766	A	C	43476766	3	2	106	1	0	0	0	0	1	0	0	0	16201	11	1	5	1968	5	TMEM62	15	43476766	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10		43476766	59054626	52	6668											
COG7	91949	hgsc.bcm.edu;ucsc.edu	37	16	23417539	23417539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	23417539	G	A	23417539	3	1	106	1	0	0	0	0	1	0	0	0	3665	1232	43	2	816	2	COG7	16	23417539	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10		23417539	66937214	53	6669											
ARHGAP17	55114	hgsc.bcm.edu	37	16	24960732	24960732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	24960732	T	A	24960732	3	1	106	1	0	0	0	0	1	0	0	0	867	1754	61	5	1557	5	ARHGAP17	16	24960732	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10	1543193	24960732	65394021	54	6670											
NFAT5	10725	hgsc.bcm.edu	37	16	69727924	69727924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	69727924	T	C	69727924	3	2	106	1	0	0	0	0	1	0	0	0	10367	1464	51	3	4246	3	NFAT5	16	69727924	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10	44767192	69727924	20626829	55	6671											
RHBDL3	162494	hgsc.bcm.edu	37	17	30621399	30621399	+	Silent	SNP	T	T	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	30621399	T	G	30621399	2	3	106	1	0	0	0	0	0	0	0	1	13336	1828	64	5		5	RHBDL3	17	30621399	Silent	SNP	T	TCGA-B0-4718-01A-01D-1361-10		30621399	50573811	56	6672											
MED24	9862	hgsc.bcm.edu;ucsc.edu	37	17	38176135	38176135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	38176135	G	T	38176135	3	4	106	1	0	0	0	0	1	0	0	0	9449	1232	43	4	221	4	MED24	17	38176135	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	7554736	38176135	43019075	57	6673											
SGCA	6442	hgsc.bcm.edu	37	17	48245918	48245918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	48245918	A	G	48245918	3	3	106	1	0	0	0	0	1	0	0	0	14212	304	11	3	587	3	SGCA	17	48245918	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	10069783	48245918	32949292	58	6674											
DHX40	79665	hgsc.bcm.edu	37	17	57656854	57656854	+	Silent	SNP	C	C	T	rs2697409		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	57656854	C	T	57656854	2	4	106	1	0	0	0	0	0	0	0	1	4514	883	31	1		1	DHX40	17	57656854	Silent	SNP	C	TCGA-B0-4718-01A-01D-1361-10	9410936	57656854	23538356	59	6675											
FTSJ3	117246	hgsc.bcm.edu	37	17	61899416	61899416	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	61899416	G	C	61899416	3	2	106	1	0	0	0	0	1	0	0	0	6096	942	33	4	1172	4	FTSJ3	17	61899416	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	4242562	61899416	19295794	60	6676											
CHMP1B	57132	hgsc.bcm.edu;ucsc.edu	37	18	11851688	11851688	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	11851688	A	C	11851688	3	2	106	1	0	0	0	0	1	0	0	0	3355	246	9	5	180	5	CHMP1B	18	11851688	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10		11851688	66225560	61	6677											
SERPINB13	5275	hgsc.bcm.edu	37	18	61264230	61264230	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	61264230	G	A	61264230	4	1	106	1	0	0	0	0	0	1	0	0	14113	1357	47	2	835	2	SERPINB13	18	61264230	Nonsense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	49412542	61264230	16813018	62	6678											
ADNP2	22850	hgsc.bcm.edu;ucsc.edu	37	18	77894041	77894041	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	77894041	T	G	77894041	3	3	106	1	0	0	0	0	1	0	0	0	324	1435	50	5	755	5	ADNP2	18	77894041	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10	16629811	77894041	183207	63	6679											
DIRAS1	148252	hgsc.bcm.edu	37	19	2717570	2717570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	2717570	C	A	2717570	3	1	106	1	0	0	0	0	1	0	0	0	4532	623	22	4	365	4	DIRAS1	19	2717570	Missense_Mutation	SNP	C	TCGA-B0-4718-01A-01D-1361-10		2717570	56411413	64	6680											
SLC25A23	79085	hgsc.bcm.edu	37	19	6454351	6454351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	6454351	A	G	6454351	3	3	106	1	0	0	0	0	1	0	0	0	14499	43	2	3	648	3	SLC25A23	19	6454351	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	3736781	6454351	52674632	65	6681											
PRX	57716	hgsc.bcm.edu	37	19	40902613	40902613	+	Missense_Mutation	SNP	G	G	A	rs150582069		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	40902613	G	A	40902613	3	1	106	1	0	0	0	0	1	0	0	0	12652	1116	39	1	2743	1	PRX	19	40902613	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10	34448262	40902613	18226370	66	6682											
RALGAPA2	57186	hgsc.bcm.edu;ucsc.edu	37	20	20486076	20486076	+	Silent	SNP	A	A	G	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	20486076	A	G	20486076	2	3	106	1	0	0	0	0	0	0	0	1	13027	127	5	3		3	RALGAPA2	20	20486076	Silent	SNP	A	TCGA-B0-4718-01A-01D-1361-10		20486076	42539444	67	6683											
CHRNA4	1137	hgsc.bcm.edu	37	20	61981763	61981763	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	T	61981763	A	T	61981763	3	4	106	1	0	0	0	0	1	0	0	0	3387	304	11	5	891	5	CHRNA4	20	61981763	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10	41495687	61981763	1043757	68	6684											
POTED	317754	hgsc.bcm.edu	37	21	15013735	15013735	+	Missense_Mutation	SNP	A	A	G	rs9980783	bycluster	TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	G	15013735	A	G	15013735	3	3	106	1	0	0	0	0	1	0	0	0	12270	217	8	3	1645	3	POTED	21	15013735	Missense_Mutation	SNP	A	TCGA-B0-4718-01A-01D-1361-10		15013735	33116160	69	6685											
ARVCF	421	hgsc.bcm.edu;ucsc.edu	37	22	19969473	19969473	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	19969473	G	C	19969473	3	2	106	1	0	0	0	0	1	0	0	0	1003	1115	39	4	2600	4	ARVCF	22	19969473	Missense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10		19969473	31335093	70	6686											
SRRD	402055	hgsc.bcm.edu;ucsc.edu	37	22	26884408	26884408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	C	26884408	T	C	26884408	3	2	106	1	0	0	0	0	1	0	0	0	15179	1493	52	3	577	3	SRRD	22	26884408	Missense_Mutation	SNP	T	TCGA-B0-4718-01A-01D-1361-10	6914935	26884408	24420158	71	6687											
KDM5C	8242	hgsc.bcm.edu	37	X	53230752	53230752	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4718-01A-01D-1361-10	TCGA-B0-4718-11A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	698af929-547a-47d9-b7b6-3c096b1b3c75	d427b9ce-b2aa-4b47-97d5-0a74096d4e02	A	53230752	G	A	53230752	4	1	106	1	0	0	0	0	0	1	0	0	8142	1153	40	1	2791	1	KDM5C	23	53230752	Nonsense_Mutation	SNP	G	TCGA-B0-4718-01A-01D-1361-10		53230752	102039808	72	6688											
CCDC27	148870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	3669160	3669160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	3669160	C	A	3669160	3	1	107	1	0	0	0	0	1	0	0	0	2803	913	32	4	117	4	CCDC27	1	3669160	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10		3669160	245581461	1	6689											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11184589	11184589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	11184589	C	G	11184589	3	3	107	1	0	0	0	0	1	0	0	0	9961	739	26	4	1069	4	MTOR	1	11184589	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	7515429	11184589	238066032	2	6690											
COL11A1	1301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	103468818	103468818	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	103468818	G	A	103468818	4	1	107	1	0	0	0	0	0	1	0	0	3669	1153	40	1	3657	1	COL11A1	1	103468818	Nonsense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	92284229	103468818	145781803	3	6691											
TXNIP	10628	broad.mit.edu	37	1	145440928	145440928	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	145440928	G	G	145440928	3	3	107	1	0	0	0	0	1	0	0	0	16815	855	30	4	1041	4	TXNIP	1	145440928	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	41972110	145440928	103809693	4	6692											
FAM49A	81553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	16742257	16742257	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	16742257	C	T	16742257	5	4	107	1	0	0	0	0	0	0	1	0	5582	550	19	1	276	1	FAM49A	2	16742257	Splice_Site	SNP	C	TCGA-B0-4810-01A-01D-1501-10		16742257	226457116	5	6693											
MGAT5	4249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	135107382	135107382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	135107382	G	A	135107382	3	1	107	1	0	0	0	0	1	0	0	0	9555	1319	46	2	1153	2	MGAT5	2	135107382	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	118365125	135107382	108091991	6	6694											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141135789	141135789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	141135789	C	A	141135789	3	1	107	1	0	0	0	0	1	0	0	0	8962	595	21	4	3297	4	LRP1B	2	141135789	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	6028407	141135789	102063584	7	6695											
CLK1	1195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	201721415	201721415	+	Silent	SNP	T	T	C	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	C	201721415	T	C	201721415	2	2	107	1	0	0	0	0	0	0	0	1	3538	1606	56	3		3	CLK1	2	201721415	Silent	SNP	T	TCGA-B0-4810-01A-01D-1501-10	60585626	201721415	41477958	8	6696											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188224	10188224	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	-	10188224	G	-	10188224	7	5	107	1	0	1	0	1	0	0	0	0	17174	1000	35	0	373	0	VHL	3	10188224	Frame_Shift_Del	DEL	G	TCGA-B0-4810-01A-01D-1501-10		10188224	187834206	9	6697											
CCDC13	152206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	42781196	42781196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	42781196	G	T	42781196	3	4	107	1	0	0	0	0	1	0	0	0	2767	1261	44	4	1085	4	CCDC13	3	42781196	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	32592972	42781196	155241234	10	6698											
GRM2	2912	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	51749554	51749555	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	-	51749555	TT	-	51749554	7	5	107	1	0	1	0	1	0	0	0	0	6804	1609	56	0	1775	0	GRM2	3	51749554	Frame_Shift_Del	DEL	TT	TCGA-B0-4810-01A-01D-1501-10	8968358	51749554	146272876	11	6699											
ANAPC4	29945	hgsc.bcm.edu;ucsc.edu	37	4	25418164	25418164	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	-	25418164	A	-	25418164	7	5	107	1	0	1	0	1	0	0	0	0	604	417	15	0	2121	0	ANAPC4	4	25418164	Frame_Shift_Del	DEL	A	TCGA-B0-4810-01A-01D-1501-10		25418164	165736112	12	6700											
ART3	419	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77003637	77003637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	77003637	C	T	77003637	3	4	107	1	0	0	0	0	1	0	0	0	998	681	24	2	736	2	ART3	4	77003637	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	51585473	77003637	114150639	13	6701											
BMP2K	55589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	79831928	79831928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	79831928	G	T	79831928	3	4	107	1	0	0	0	0	1	0	0	0	1460	1290	45	4	2327	4	BMP2K	4	79831928	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	2828291	79831928	111322348	14	6702											
NHEDC2	0	broad.mit.edu;ucsc.edu	37	4	103971409	103971409	+	Silent	SNP	A	G	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	103971409	G	G	103971409	2	3	107	1	0	0	0	0	0	0	0	1	10408	262	10	3		3	NHEDC2	4	103971409	Silent	SNP	A	TCGA-B0-4810-01A-01D-1501-10	24139481	103971409	87182867	15	6703											
ANKRD50	57182	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	125590855	125590855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	C	125590855	T	C	125590855	3	2	107	1	0	0	0	0	1	0	0	0	677	1559	54	3	716	3	ANKRD50	4	125590855	Missense_Mutation	SNP	T	TCGA-B0-4810-01A-01D-1501-10	21619446	125590855	65563421	16	6704											
NEK1	4750	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	170510619	170510619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	170510619	C	T	170510619	3	4	107	1	0	0	0	0	1	0	0	0	10328	855	30	2	3449	2	NEK1	4	170510619	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	44919764	170510619	20643657	17	6705											
SHROOM1	134549	broad.mit.edu;ucsc.edu	37	5	132158628	132158628	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	132158628	T	T	132158628	3	4	107	1	0	0	0	0	1	0	0	0	14306	855	30	2	143	2	SHROOM1	5	132158628	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10		132158628	48756632	18	6706	67	2									
SHROOM1	134549	broad.mit.edu;ucsc.edu	37	5	132158629	132158629	+	Silent	SNP	C	A	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	132158629	A	A	132158629	2	1	107	1	0	0	0	0	0	0	0	1	14306	581	21	4		4	SHROOM1	5	132158629	Silent	SNP	C	TCGA-B0-4810-01A-01D-1501-10	1	132158629	48756631	19	6707	67	2									
FAM114A2	10827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	153390869	153390869	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	153390869	A	T	153390869	3	4	107	1	0	0	0	0	1	0	0	0	5408	14	1	5	616	5	FAM114A2	5	153390869	Missense_Mutation	SNP	A	TCGA-B0-4810-01A-01D-1501-10	21232240	153390869	27524391	20	6708											
IFNGR1	3459	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	137519168	137519168	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	137519168	T	A	137519168	3	1	107	1	0	0	0	0	1	0	0	0	7556	1564	54	5	3	5	IFNGR1	6	137519168	Missense_Mutation	SNP	T	TCGA-B0-4810-01A-01D-1501-10		137519168	33595899	21	6709											
NT5C3	51251	broad.mit.edu;hgsc.bcm.edu	37	7	33054375	33054375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	33054375	T	G	33054375	3	3	107	1	0	0	0	0	1	0	0	0	10695	1606	56	5	36	5	NT5C3	7	33054375	Missense_Mutation	SNP	T	TCGA-B0-4810-01A-01D-1501-10		33054375	126084288	22	6710											
MLL3	58508	hgsc.bcm.edu	37	7	151921164	151921167	+	Frame_Shift_Del	DEL	AGGA	AGGA	-	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	AGGA	AGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	-	151921167	AGGA	-	151921164	7	5	107	1	0	1	0	1	0	0	0	0	9629	188	7	0	11636	0	MLL3	7	151921164	Frame_Shift_Del	DEL	AGGA	TCGA-B0-4810-01A-01D-1501-10	118866789	151921164	7217499	23	6711											
XKR6	286046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	10782233	10782233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	10782233	C	T	10782233	3	4	107	1	0	0	0	0	1	0	0	0	17447	768	27	1	1061	1	XKR6	8	10782233	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10		10782233	135581789	24	6712											
RP1	6101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	55542355	55542355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	55542355	C	A	55542355	3	1	107	1	0	0	0	0	1	0	0	0	13545	477	17	4	5923	4	RP1	8	55542355	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	44760122	55542355	90821667	25	6713											
VPS13B	157680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	100711812	100711812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	100711812	G	T	100711812	3	4	107	1	0	0	0	0	1	0	0	0	17202	1174	41	4	6513	4	VPS13B	8	100711812	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	45169457	100711812	45652210	26	6714											
DSCC1	79075	broad.mit.edu;ucsc.edu	37	8	120865431	120865431	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	120865431	T	T	120865431	3	4	107	1	0	0	0	0	1	0	0	0	4772	1136	40	4	1006	4	DSCC1	8	120865431	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	20153619	120865431	25498591	27	6715											
KIAA1045	23349	broad.mit.edu	37	9	34971509	34971509	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	34971509	G	G	34971509	3	3	107	1	0	0	0	0	1	0	0	0	8214	304	11	3	216	3	KIAA1045	9	34971509	Missense_Mutation	SNP	A	TCGA-B0-4810-01A-01D-1501-10		34971509	106241922	28	6716											
C10orf18	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	5789390	5789390	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	5789390	G	T	5789390	4	4	107	1	0	0	0	0	0	1	0	0	1598	943	33	4	4052	4	C10orf18	10	5789390	Nonsense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10		5789390	129745357	29	6717											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	10	89725043	89725043	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	89725043	G	A	89725043	5	1	107	1	0	0	0	0	0	0	1	0	12748	1014	35	2	1060	2	PTEN	10	89725043	Splice_Site	SNP	G	TCGA-B0-4810-01A-01D-1501-10	83935653	89725043	45809704	30	6718											
CCDC73	493860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32635626	32635626	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	32635626	T	G	32635626	3	3	107	1	0	0	0	0	1	0	0	0	2848	1838	64	5	1013	5	CCDC73	11	32635626	Missense_Mutation	SNP	T	TCGA-B0-4810-01A-01D-1501-10		32635626	102370890	31	6719											
OR4C6	219432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55432900	55432900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	55432900	G	T	55432900	3	4	107	1	0	0	0	0	1	0	0	0	11059	933	33	4	260	4	OR4C6	11	55432900	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	22797274	55432900	79573616	32	6720											
PYGM	5837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64527310	64527310	+	Missense_Mutation	SNP	C	C	T	rs145881639	byfrequency	TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	64527310	C	T	64527310	3	4	107	1	0	0	0	0	1	0	0	0	12875	652	23	1	2547	1	PYGM	11	64527310	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	9094410	64527310	70479206	33	6721											
LRP5	4041	broad.mit.edu;hgsc.bcm.edu	37	11	68216349	68216349	+	Silent	SNP	C	C	T	rs112415702	bycluster	TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	68216349	C	T	68216349	2	4	107	1	0	0	0	0	0	0	0	1	8967	767	27	1		1	LRP5	11	68216349	Silent	SNP	C	TCGA-B0-4810-01A-01D-1501-10	3689039	68216349	66790167	34	6722											
PRB3	5544	broad.mit.edu	37	12	11420779	11420779	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	11420779	A	A	11420779	3	1	107	1	0	0	0	0	1	0	0	0	12454	1116	39	1	533	1	PRB3	12	11420779	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10		11420779	122431116	35	6723											
DENND5B	160518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	31540556	31540556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	31540556	A	T	31540556	3	4	107	1	0	0	0	0	1	0	0	0	4439	333	12	5	22	5	DENND5B	12	31540556	Missense_Mutation	SNP	A	TCGA-B0-4810-01A-01D-1501-10	20119777	31540556	102311339	36	6724											
PRICKLE1	144165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	42864091	42864091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	42864091	C	G	42864091	3	3	107	1	0	0	0	0	1	0	0	0	12496	652	23	4	2316	4	PRICKLE1	12	42864091	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	11323535	42864091	90987804	37	6725											
KCNMB4	27345	hgsc.bcm.edu	37	12	70760617	70760617	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	-	70760617	T	-	70760617	7	5	107	1	0	1	0	1	0	0	0	0	8084	1609	56	0	105	0	KCNMB4	12	70760617	Frame_Shift_Del	DEL	T	TCGA-B0-4810-01A-01D-1501-10	27896526	70760617	63091278	38	6726	68	2									
KCNMB4	27345	hgsc.bcm.edu	37	12	70760620	70760621	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	-	70760621	GG	-	70760620	7	5	107	1	0	1	0	1	0	0	0	0	8084	1116	39	0	108	0	KCNMB4	12	70760620	Frame_Shift_Del	DEL	GG	TCGA-B0-4810-01A-01D-1501-10	3	70760620	63091275	39	6727	68	2									
NOS1	4842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117728169	117728169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	117728169	G	T	117728169	3	4	107	1	0	0	0	0	1	0	0	0	10548	1165	41	4	3493	4	NOS1	12	117728169	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	46967549	117728169	16123726	40	6728											
ATP8A2	51761	broad.mit.edu;ucsc.edu	37	13	26125480	26125480	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	26125480	A	A	26125480	4	1	107	1	0	0	0	0	0	1	0	0	1193	838	29	4	938	4	ATP8A2	13	26125480	Nonsense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10		26125480	89044398	41	6729											
CDX2	1045	broad.mit.edu	37	13	28542693	28542693	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	-	28542693	-	-	28542693	7	5	107	1	0	1	0	1	0	0	0	0	3185	768	27	0	502	0	CDX2	13	28542693	Frame_Shift_Del	DEL	C	TCGA-B0-4810-01A-01D-1501-10	2417213	28542693	86627185	42	6730											
MED4	29079	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	48651403	48651403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	C	48651403	T	C	48651403	3	2	107	1	0	0	0	0	1	0	0	0	9457	1435	50	3	131	3	MED4	13	48651403	Missense_Mutation	SNP	T	TCGA-B0-4810-01A-01D-1501-10	20108710	48651403	66518475	43	6731											
ARHGAP5	394	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	32560363	32560363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	32560363	T	G	32560363	3	3	107	1	0	0	0	0	1	0	0	0	886	1493	52	5	490	5	ARHGAP5	14	32560363	Missense_Mutation	SNP	T	TCGA-B0-4810-01A-01D-1501-10		32560363	74789177	44	6732											
MDGA2	161357	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	47613333	47613333	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	47613333	A	T	47613333	4	4	107	1	0	0	0	0	0	1	0	0	9414	131	5	5	2393	5	MDGA2	14	47613333	Nonsense_Mutation	SNP	A	TCGA-B0-4810-01A-01D-1501-10	15052970	47613333	59736207	45	6733											
SLC5A11	115584	broad.mit.edu;ucsc.edu	37	16	24918068	24918068	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	C	24918068	C	C	24918068	3	2	107	1	0	0	0	0	1	0	0	0	14676	1580	55	3	1135	3	SLC5A11	16	24918068	Missense_Mutation	SNP	T	TCGA-B0-4810-01A-01D-1501-10		24918068	65436685	46	6734											
FHOD1	29109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67264547	67264547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	67264547	G	T	67264547	3	4	107	1	0	0	0	0	1	0	0	0	5889	1116	39	4	699	4	FHOD1	16	67264547	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	42346479	67264547	23090206	47	6735											
NLRP1	22861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5462474	5462474	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	5462474	C	T	5462474	4	4	107	1	0	0	0	0	0	1	0	0	10478	624	22	2	3010	2	NLRP1	17	5462474	Nonsense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10		5462474	75732736	48	6736											
SHMT1	6470	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18250958	18250958	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	18250958	T	A	18250958	3	1	107	1	0	0	0	0	1	0	0	0	14298	1725	60	5	1112	5	SHMT1	17	18250958	Missense_Mutation	SNP	T	TCGA-B0-4810-01A-01D-1501-10	12788484	18250958	62944252	49	6737											
SLC4A1	6521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42335974	42335974	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	-	42335974	G	-	42335974	7	5	107	1	0	1	0	1	0	0	0	0	14663	987	35	0	1885	0	SLC4A1	17	42335974	Frame_Shift_Del	DEL	G	TCGA-B0-4810-01A-01D-1501-10	24085016	42335974	38859236	50	6738											
OR4D2	124538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56247641	56247641	+	Missense_Mutation	SNP	G	G	A	rs149114670		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	56247641	G	A	56247641	3	1	107	1	0	0	0	0	1	0	0	0	11063	1145	40	1	627	1	OR4D2	17	56247641	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	13911667	56247641	24947569	51	6739											
TCF4	6925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	52937099	52937099	+	Silent	SNP	G	G	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	52937099	G	A	52937099	2	1	107	1	0	0	0	0	0	0	0	1	15707	987	35	2		2	TCF4	18	52937099	Silent	SNP	G	TCGA-B0-4810-01A-01D-1501-10		52937099	25140149	52	6740											
TNFSF14	8740	broad.mit.edu	37	19	6665221	6665221	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	6665221	A	A	6665221	3	1	107	1	0	0	0	0	1	0	0	0	16319	507	18	4	287	4	TNFSF14	19	6665221	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10		6665221	52463762	53	6741											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9085732	9085732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	9085732	G	A	9085732	3	1	107	1	0	0	0	0	1	0	0	0	9980	942	33	2	37776	2	MUC16	19	9085732	Missense_Mutation	SNP	G	TCGA-B0-4810-01A-01D-1501-10	2420511	9085732	50043251	54	6742											
OR1I1	126370	broad.mit.edu	37	19	15198934	15198934	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	15198934	G	G	15198934	3	3	107	1	0	0	0	0	1	0	0	0	10965	275	10	3	1060	3	OR1I1	19	15198934	Missense_Mutation	SNP	A	TCGA-B0-4810-01A-01D-1501-10	6113202	15198934	43930049	55	6743											
AKAP8	10270	broad.mit.edu;ucsc.edu	37	19	15465831	15465831	+	Silent	SNP	T	C	C	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	C	15465831	C	C	15465831	2	2	107	1	0	0	0	0	0	0	0	1	457	1567	55	3		3	AKAP8	19	15465831	Silent	SNP	T	TCGA-B0-4810-01A-01D-1501-10	266897	15465831	43663152	56	6744											
PIK3R2	5296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18278085	18278085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	18278085	C	A	18278085	3	1	107	1	0	0	0	0	1	0	0	0	11926	711	25	4	1751	4	PIK3R2	19	18278085	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	2812254	18278085	40850898	57	6745											
RPL18	6141	broad.mit.edu;hgsc.bcm.edu	37	19	49121088	49121088	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	49121088	T	G	49121088	3	3	107	1	0	0	0	0	1	0	0	0	13577	1551	54	5	540	5	RPL18	19	49121088	Missense_Mutation	SNP	T	TCGA-B0-4810-01A-01D-1501-10	30843003	49121088	10007895	58	6746											
COMT	1312	broad.mit.edu;ucsc.edu	37	22	19956115	19956115	+	Silent	SNP	A	G	G	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	G	19956115	G	G	19956115	2	3	107	1	0	0	0	0	0	0	0	1	3727	175	7	3		3	COMT	22	19956115	Silent	SNP	A	TCGA-B0-4810-01A-01D-1501-10		19956115	31348451	59	6747											
FAM9A	171482	broad.mit.edu;hgsc.bcm.edu	37	X	8763259	8763259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	8763259	C	T	8763259	3	4	107	1	0	0	0	0	1	0	0	0	5666	864	30	2	319	2	FAM9A	23	8763259	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10		8763259	146507301	60	6748											
BMX	660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	15540571	15540571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	A	15540571	C	A	15540571	3	1	107	1	0	0	0	0	1	0	0	0	1473	595	21	4	635	4	BMX	23	15540571	Missense_Mutation	SNP	C	TCGA-B0-4810-01A-01D-1501-10	6777312	15540571	139729989	61	6749											
RPGR	6103	hgsc.bcm.edu	37	X	38145180	38145180	+	Silent	SNP	C	C	T	rs139462910	byfrequency	TCGA-B0-4810-01A-01D-1501-10	TCGA-B0-4810-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e014eeeb-c48e-42bb-a683-93299087a3cf	0ca418e3-1de1-40b8-bd40-cb8f47bc0658	T	38145180	C	T	38145180	2	4	107	1	0	0	0	0	0	0	0	1	13561	680	24	2		2	RPGR	23	38145180	Silent	SNP	C	TCGA-B0-4810-01A-01D-1501-10	22604609	38145180	117125380	62	6750											
IPO13	9670	broad.mit.edu	37	1	44433044	44433044	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	44433044	T	T	44433044	3	4	108	1	0	0	0	0	1	0	0	0	7801	1087	38	4	2745	4	IPO13	1	44433044	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10		44433044	204817577	1	6751											
MOBKL2C	0	broad.mit.edu	37	1	47075867	47075867	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	47075867	T	T	47075867	3	4	108	1	0	0	0	0	1	0	0	0	9693	246	9	5	230	5	MOBKL2C	1	47075867	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10	2642823	47075867	202174754	2	6752											
NOTCH2	4853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	120497758	120497758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	120497758	G	A	120497758	3	1	108	1	0	0	0	0	1	0	0	0	10555	1195	42	2	5379	2	NOTCH2	1	120497758	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	73421891	120497758	128752863	3	6753											
FLG2	388698	hgsc.bcm.edu;ucsc.edu	37	1	152327665	152327670	+	In_Frame_Del	DEL	CCCGAA	CCCGAA	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	CCCGAA	CCCGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	152327670	CCCGAA	-	152327665	7	5	108	1	0	1	0	1	0	0	0	0	5930	855	30	0	4582	0	FLG2	1	152327665	In_Frame_Del	DEL	CCCGAA	TCGA-B0-4811-01A-01D-1501-10	31829907	152327665	96922956	4	6754											
GATAD2B	57459	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153782691	153782691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	153782691	G	A	153782691	3	1	108	1	0	0	0	0	1	0	0	0	6268	1174	41	2	41	2	GATAD2B	1	153782691	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	1455026	153782691	95467930	5	6755											
C1orf114	57821	hgsc.bcm.edu;ucsc.edu	37	1	169394116	169394117	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	169394117	-	C	169394116	7	5	108	1	0	1	1	0	0	0	0	0	1989	1435	50	0	1496	0	C1orf114	1	169394116	Frame_Shift_Ins	INS	-	TCGA-B0-4811-01A-01D-1501-10	15611425	169394116	79856505	6	6756											
USH2A	7399	hgsc.bcm.edu;ucsc.edu	37	1	216595674	216595674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	216595674	T	-	216595674	7	5	108	1	0	1	0	1	0	0	0	0	17048	1493	52	0	15901	0	USH2A	1	216595674	Frame_Shift_Del	DEL	T	TCGA-B0-4811-01A-01D-1501-10	47201558	216595674	32654947	7	6757											
ZNF496	84838	broad.mit.edu;ucsc.edu	37	1	247463877	247463877	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	247463877	C	C	247463877	3	2	108	1	0	0	0	0	1	0	0	0	17957	1116	39	4	59	4	ZNF496	1	247463877	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	30868203	247463877	1786744	8	6758											
GREB1	9687	broad.mit.edu;hgsc.bcm.edu	37	2	11767208	11767208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	11767208	T	A	11767208	3	1	108	1	0	0	0	0	1	0	0	0	6767	1464	51	5	4629	5	GREB1	2	11767208	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10		11767208	231432165	9	6759											
ADCY3	109	broad.mit.edu;ucsc.edu	37	2	25050900	25050900	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	25050900	T	T	25050900	3	4	108	1	0	0	0	0	1	0	0	0	295	188	7	5	1167	5	ADCY3	2	25050900	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10	13283692	25050900	218148473	10	6760											
PAPOLG	64895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61021866	61021866	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	61021866	T	-	61021866	7	5	108	1	0	1	0	1	0	0	0	0	11438	1493	52	0	2089	0	PAPOLG	2	61021866	Frame_Shift_Del	DEL	T	TCGA-B0-4811-01A-01D-1501-10	35970966	61021866	182177507	11	6761											
ALMS1	7840	broad.mit.edu	37	2	73680749	73680749	+	Silent	SNP	A	G	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	73680749	G	G	73680749	2	3	108	1	0	0	0	0	0	0	0	1	535	69	3	3		3	ALMS1	2	73680749	Silent	SNP	A	TCGA-B0-4811-01A-01D-1501-10	12658883	73680749	169518624	12	6762											
REV1	51455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	100055089	100055089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	100055089	C	G	100055089	3	3	108	1	0	0	0	0	1	0	0	0	13252	681	24	4	2640	4	REV1	2	100055089	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	26374340	100055089	143144284	13	6763											
CKAP2L	150468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	113509843	113509843	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	113509843	C	A	113509843	5	1	108	1	0	0	0	0	0	0	1	0	3445	521	18	4	654	4	CKAP2L	2	113509843	Splice_Site	SNP	C	TCGA-B0-4811-01A-01D-1501-10	13454754	113509843	129689530	14	6764											
SCTR	6344	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	120204412	120204412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	120204412	A	G	120204412	3	3	108	1	0	0	0	0	1	0	0	0	13956	420	15	3	271	3	SCTR	2	120204412	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10	6694569	120204412	122994961	15	6765											
MGAT5	4249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	135012082	135012082	+	Silent	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	135012082	G	A	135012082	2	1	108	1	0	0	0	0	0	0	0	1	9555	962	34	2		2	MGAT5	2	135012082	Silent	SNP	G	TCGA-B0-4811-01A-01D-1501-10	14807670	135012082	108187291	16	6766											
BAZ2B	29994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160245882	160245882	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	160245882	C	G	160245882	3	3	108	1	0	0	0	0	1	0	0	0	1332	835	29	4	3384	4	BAZ2B	2	160245882	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	25233800	160245882	82953491	17	6767											
KCNH7	90134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	163241253	163241253	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	163241253	T	G	163241253	3	3	108	1	0	0	0	0	1	0	0	0	8044	1838	64	5	699	5	KCNH7	2	163241253	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	2995371	163241253	79958120	18	6768											
ABCB11	8647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	169869900	169869900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	169869900	T	C	169869900	3	2	108	1	0	0	0	0	1	0	0	0	42	1406	49	3	3790	3	ABCB11	2	169869900	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	6628647	169869900	73329473	19	6769											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179516214	179516219	+	In_Frame_Del	DEL	CACCAG	CACCAG	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	CACCAG	CACCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	179516219	CACCAG	-	179516214	7	5	108	1	0	1	0	1	0	0	0	0	16747	581	21	0	68382	0	TTN	2	179516214	In_Frame_Del	DEL	CACCAG	TCGA-B0-4811-01A-01D-1501-10	9646314	179516214	63683159	20	6770											
USP37	57695	broad.mit.edu;ucsc.edu	37	2	219353073	219353073	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	219353073	T	T	219353073	3	4	108	1	0	0	0	0	1	0	0	0	17080	1348	47	4	1443	4	USP37	2	219353073	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	39836859	219353073	23846300	21	6771											
RNF25	64320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219532706	219532706	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	219532706	T	C	219532706	5	2	108	1	0	0	0	0	0	0	1	0	13498	1594	55	3	1117	3	RNF25	2	219532706	Splice_Site	SNP	T	TCGA-B0-4811-01A-01D-1501-10	179633	219532706	23666667	22	6772											
UGT1A7	54577	broad.mit.edu;hgsc.bcm.edu	37	2	234591121	234591121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	234591121	G	A	234591121	3	1	108	1	0	0	0	0	1	0	0	0	16962	1000	35	2	540	2	UGT1A7	2	234591121	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	15058415	234591121	8608252	23	6773											
ZNF621	285268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	40574189	40574189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	40574189	C	A	40574189	3	1	108	1	0	0	0	0	1	0	0	0	18057	827	29	4	942	4	ZNF621	3	40574189	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10		40574189	157448241	24	6774											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47127749	47127749	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	47127749	A	-	47127749	7	5	108	1	0	1	0	1	0	0	0	0	14144	131	5	0	2405	0	SETD2	3	47127749	Frame_Shift_Del	DEL	A	TCGA-B0-4811-01A-01D-1501-10	6553560	47127749	150894681	25	6775											
PLXNB1	5364	broad.mit.edu	37	3	48461366	48461366	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	48461366	G	G	48461366	3	3	108	1	0	0	0	0	1	0	0	0	12130	826	29	4	4190	4	PLXNB1	3	48461366	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	1333617	48461366	149561064	26	6776											
WDR52	55779	broad.mit.edu	37	3	113128137	113128137	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	113128137	G	G	113128137	3	3	108	1	0	0	0	0	1	0	0	0	17316	72	3	3	4989	3	WDR52	3	113128137	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10	64666771	113128137	84894293	27	6777											
PIK3R4	30849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130452841	130452841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	130452841	T	A	130452841	3	1	108	1	0	0	0	0	1	0	0	0	11928	1783	62	5	3143	5	PIK3R4	3	130452841	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	17324704	130452841	67569589	28	6778											
TBC1D1	23216	broad.mit.edu;ucsc.edu	37	4	38023333	38023333	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	38023333	T	T	38023333	3	4	108	1	0	0	0	0	1	0	0	0	15609	333	12	5	1222	5	TBC1D1	4	38023333	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10		38023333	153130943	29	6779											
TECRL	253017	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	65147225	65147225	+	Silent	SNP	A	A	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	65147225	A	G	65147225	2	3	108	1	0	0	0	0	0	0	0	1	15758	11	1	3		3	TECRL	4	65147225	Silent	SNP	A	TCGA-B0-4811-01A-01D-1501-10	27123892	65147225	126007051	30	6780											
NUDT12	83594	hgsc.bcm.edu;ucsc.edu	37	5	102894735	102894736	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	CAG	102894736	-	CAG	102894735	7	5	108	1	0	1	1	0	0	0	0	0	10735	507	18	0	767	0	NUDT12	5	102894735	In_Frame_Ins	INS	-	TCGA-B0-4811-01A-01D-1501-10		102894735	78020525	31	6781											
PCDHB6	56130	hgsc.bcm.edu;ucsc.edu	37	5	140529900	140529900	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	140529900	T	-	140529900	7	5	108	1	0	1	0	1	0	0	0	0	11553	1609	56	0	64	0	PCDHB6	5	140529900	Frame_Shift_Del	DEL	T	TCGA-B0-4811-01A-01D-1501-10	37635165	140529900	40385360	32	6782											
TREML1	340205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	41117371	41117371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	41117371	G	T	41117371	3	4	108	1	0	0	0	0	1	0	0	0	16484	1174	41	4	30	4	TREML1	6	41117371	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10		41117371	129997696	33	6783											
SLC35B2	347734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44224429	44224429	+	Silent	SNP	C	C	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	44224429	C	T	44224429	2	4	108	1	0	0	0	0	0	0	0	1	14589	581	21	2		2	SLC35B2	6	44224429	Silent	SNP	C	TCGA-B0-4811-01A-01D-1501-10	3107058	44224429	126890638	34	6784											
COL12A1	1303	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	75864169	75864169	+	Silent	SNP	G	G	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	75864169	G	C	75864169	2	2	108	1	0	0	0	0	0	0	0	1	3671	1219	43	4		4	COL12A1	6	75864169	Silent	SNP	G	TCGA-B0-4811-01A-01D-1501-10	31639740	75864169	95250898	35	6785											
CTAGE9	643854	hgsc.bcm.edu	37	6	132032041	132032041	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	132032041	A	-	132032041	7	5	108	1	0	1	0	1	0	0	0	0	3998	243	9	0	2220	0	CTAGE9	6	132032041	Frame_Shift_Del	DEL	A	TCGA-B0-4811-01A-01D-1501-10	56167872	132032041	39083026	36	6786											
RAET1E	135250	broad.mit.edu	37	6	150211277	150211277	+	Silent	SNP	A	G	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	150211277	G	G	150211277	2	3	108	1	0	0	0	0	0	0	0	1	13012	262	10	3		3	RAET1E	6	150211277	Silent	SNP	A	TCGA-B0-4811-01A-01D-1501-10	18179236	150211277	20903790	37	6787											
C6orf118	168090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	165715542	165715542	+	Missense_Mutation	SNP	C	C	T	rs143539145		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	165715542	C	T	165715542	3	4	108	1	0	0	0	0	1	0	0	0	2325	768	27	1	1172	1	C6orf118	6	165715542	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	15504265	165715542	5399525	38	6788											
CALD1	800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134618404	134618404	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	134618404	T	G	134618404	3	3	108	1	0	0	0	0	1	0	0	0	2583	1493	52	5	951	5	CALD1	7	134618404	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10		134618404	24520259	39	6789											
CLCN1	1180	hgsc.bcm.edu;ucsc.edu	37	7	143048913	143048913	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	143048913	C	-	143048913	7	5	108	1	0	1	0	1	0	0	0	0	3464	855	30	0	2912	0	CLCN1	7	143048913	Frame_Shift_Del	DEL	C	TCGA-B0-4811-01A-01D-1501-10	8430509	143048913	16089750	40	6790											
PABPC1	26986	broad.mit.edu;hgsc.bcm.edu	37	8	101725345	101725345	+	Silent	SNP	T	T	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	101725345	T	G	101725345	2	3	108	1	0	0	0	0	0	0	0	1	11370	1741	61	5		5	PABPC1	8	101725345	Silent	SNP	T	TCGA-B0-4811-01A-01D-1501-10		101725345	44638677	41	6791			1	14		2	2	22	T		7.868742e-05
PABPC1	26986	broad.mit.edu;hgsc.bcm.edu	37	8	101725366	101725366	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	101725366	T	A	101725366	3	1	108	1	0	0	0	0	1	0	0	0	11370	1490	52	5	1263	5	PABPC1	8	101725366	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	21	101725366	44638656	42	6792			1	14		2	2	22	T		7.868742e-05
TM7SF4	0	broad.mit.edu;ucsc.edu	37	8	105361373	105361373	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	105361373	G	G	105361373	3	3	108	1	0	0	0	0	1	0	0	0	15988	391	14	3	595	3	TM7SF4	8	105361373	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10	3636007	105361373	41002649	43	6793											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113349913	113349913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	113349913	A	C	113349913	3	2	108	1	0	0	0	0	1	0	0	0	3948	14	1	5	4539	5	CSMD3	8	113349913	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10	7988540	113349913	33014109	44	6794											
ASAP1	50807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	131136342	131136342	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	131136342	C	G	131136342	3	3	108	1	0	0	0	0	1	0	0	0	1010	912	32	4	1917	4	ASAP1	8	131136342	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	17786429	131136342	15227680	45	6795											
TG	7038	broad.mit.edu;ucsc.edu	37	8	134030154	134030154	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	134030154	T	T	134030154	3	4	108	1	0	0	0	0	1	0	0	0	15825	855	30	2	6844	2	TG	8	134030154	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	2893812	134030154	12333868	46	6796											
EEF1D	1936	broad.mit.edu;hgsc.bcm.edu	37	8	144668953	144668953	+	Silent	SNP	T	T	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	144668953	T	A	144668953	2	1	108	1	0	0	0	0	0	0	0	1	4928	1567	55	5		5	EEF1D	8	144668953	Silent	SNP	T	TCGA-B0-4811-01A-01D-1501-10	10638799	144668953	1695069	47	6797											
PARP10	84875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145059205	145059205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	145059205	G	A	145059205	3	1	108	1	0	0	0	0	1	0	0	0	11462	1377	48	2	2140	2	PARP10	8	145059205	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	390252	145059205	1304817	48	6798											
TJP2	9414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	71855060	71855060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	71855060	A	G	71855060	3	3	108	1	0	0	0	0	1	0	0	0	15942	391	14	3	2786	3	TJP2	9	71855060	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10		71855060	69358371	49	6799											
GRIN3A	116443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	104499650	104499650	+	Silent	SNP	G	G	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	104499650	G	T	104499650	2	4	108	1	0	0	0	0	0	0	0	1	6790	1074	38	4		4	GRIN3A	9	104499650	Silent	SNP	G	TCGA-B0-4811-01A-01D-1501-10	32644590	104499650	36713781	50	6800											
SLC44A1	23446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	108147762	108147762	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	108147762	T	A	108147762	3	1	108	1	0	0	0	0	1	0	0	0	14648	1490	52	5	1987	5	SLC44A1	9	108147762	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	3648112	108147762	33065669	51	6801											
PKN3	29941	broad.mit.edu;ucsc.edu	37	9	131480826	131480826	+	Splice_Site	SNP	A	C	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	131480826	C	C	131480826	5	2	108	1	0	0	0	0	0	0	1	0	11988	202	7	5	2117	5	PKN3	9	131480826	Splice_Site	SNP	A	TCGA-B0-4811-01A-01D-1501-10	23333064	131480826	9732605	52	6802											
ADAMTSL2	9719	broad.mit.edu;ucsc.edu	37	9	136412244	136412244	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	136412244	C	C	136412244	3	2	108	1	0	0	0	0	1	0	0	0	275	1696	59	3	878	3	ADAMTSL2	9	136412244	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	4931418	136412244	4801187	53	6803											
IDI1	3422	hgsc.bcm.edu;ucsc.edu	37	10	1088643	1088643	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	1088643	T	-	1088643	7	5	108	1	0	1	0	1	0	0	0	0	7506	1609	56	0	396	0	IDI1	10	1088643	Frame_Shift_Del	DEL	T	TCGA-B0-4811-01A-01D-1501-10		1088643	134446104	54	6804											
ITGB1	3688	broad.mit.edu;hgsc.bcm.edu	37	10	33199330	33199330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	33199330	G	A	33199330	3	1	108	1	0	0	0	0	1	0	0	0	7897	1377	48	2	661	2	ITGB1	10	33199330	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	32110687	33199330	102335417	55	6805											
INSC	387755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	15267524	15267524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	15267524	G	A	15267524	3	1	108	1	0	0	0	0	1	0	0	0	7771	1261	44	2	1728	2	INSC	11	15267524	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10		15267524	119738992	56	6806											
NAV2	89797	broad.mit.edu;ucsc.edu	37	11	20078104	20078104	+	Silent	SNP	C	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	20078104	T	T	20078104	2	4	108	1	0	0	0	0	0	0	0	1	10191	580	20	2		2	NAV2	11	20078104	Silent	SNP	C	TCGA-B0-4811-01A-01D-1501-10	4810580	20078104	114928412	57	6807											
MUC15	143662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	26582750	26582750	+	Silent	SNP	C	C	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	26582750	C	T	26582750	2	4	108	1	0	0	0	0	0	0	0	1	9979	639	23	1		1	MUC15	11	26582750	Silent	SNP	C	TCGA-B0-4811-01A-01D-1501-10	6504646	26582750	108423766	58	6808											
DGKZ	8525	broad.mit.edu	37	11	46388175	46388175	+	Silent	SNP	G	A	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	46388175	A	A	46388175	2	1	108	1	0	0	0	0	0	0	0	1	4476	991	35	2		2	DGKZ	11	46388175	Silent	SNP	G	TCGA-B0-4811-01A-01D-1501-10	19805425	46388175	88618341	59	6809											
DPF2	5977	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65113420	65113420	+	Silent	SNP	A	A	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	65113420	A	C	65113420	2	2	108	1	0	0	0	0	0	0	0	1	4719	320	12	5		5	DPF2	11	65113420	Silent	SNP	A	TCGA-B0-4811-01A-01D-1501-10	18725245	65113420	69893096	60	6810											
GPR83	10888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	94113463	94113463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	94113463	G	A	94113463	3	1	108	1	0	0	0	0	1	0	0	0	6720	1232	43	2	151	2	GPR83	11	94113463	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	29000043	94113463	40893053	61	6811											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	103057148	103057148	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	103057148	G	C	103057148	3	2	108	1	0	0	0	0	1	0	0	0	4848	1000	35	4	6977	4	DYNC2H1	11	103057148	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	8943685	103057148	31949368	62	6812											
SLC2A14	144195	broad.mit.edu;hgsc.bcm.edu	37	12	7967042	7967042	+	Missense_Mutation	SNP	C	C	T	rs140568143	byfrequency	TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	7967042	C	T	7967042	3	4	108	1	0	0	0	0	1	0	0	0	14556	536	19	1	133	1	SLC2A14	12	7967042	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10		7967042	125884853	63	6813											
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49436557	49436557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	49436557	T	C	49436557	3	2	108	1	0	0	0	0	1	0	0	0	9628	1580	55	3	10980	3	MLL2	12	49436557	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	41469515	49436557	84415338	64	6814	69	2									
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49436558	49436558	+	Silent	SNP	G	G	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	49436558	G	C	49436558	2	2	108	1	0	0	0	0	0	0	0	1	9628	1306	46	4		4	MLL2	12	49436558	Silent	SNP	G	TCGA-B0-4811-01A-01D-1501-10	1	49436558	84415337	65	6815	69	2									
LMBR1L	55716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49495927	49495927	+	Silent	SNP	A	A	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	49495927	A	G	49495927	2	3	108	1	0	0	0	0	0	0	0	1	8848	407	15	3		3	LMBR1L	12	49495927	Silent	SNP	A	TCGA-B0-4811-01A-01D-1501-10	59369	49495927	84355968	66	6816											
NR4A1	3164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52448382	52448382	+	Silent	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	52448382	G	A	52448382	2	1	108	1	0	0	0	0	0	0	0	1	10639	1132	40	1		1	NR4A1	12	52448382	Silent	SNP	G	TCGA-B0-4811-01A-01D-1501-10	2952455	52448382	81403513	67	6817											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53685805	53685805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	53685805	T	C	53685805	3	2	108	1	0	0	0	0	1	0	0	0	5255	1551	54	3	5831	3	ESPL1	12	53685805	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	1237423	53685805	80166090	68	6818											
NR2C1	7181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	95422176	95422176	+	Silent	SNP	T	T	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	95422176	T	C	95422176	2	2	108	1	0	0	0	0	0	0	0	1	10629	1625	57	3		3	NR2C1	12	95422176	Silent	SNP	T	TCGA-B0-4811-01A-01D-1501-10	41736371	95422176	38429719	69	6819											
PSMA6	5687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	35777199	35777199	+	Splice_Site	SNP	G	G	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	35777199	G	C	35777199	5	2	108	1	0	0	0	0	0	0	1	0	12681	956	33	4	82	4	PSMA6	14	35777199	Splice_Site	SNP	G	TCGA-B0-4811-01A-01D-1501-10		35777199	71572341	70	6820											
NEK9	91754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75553771	75553771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	75553771	T	C	75553771	3	2	108	1	0	0	0	0	1	0	0	0	10338	1435	50	3	180	3	NEK9	14	75553771	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	39776572	75553771	31795769	71	6821											
SEMA6D	80031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	48063502	48063502	+	Silent	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	48063502	G	A	48063502	2	1	108	1	0	0	0	0	0	0	0	1	14055	1045	37	1		1	SEMA6D	15	48063502	Silent	SNP	G	TCGA-B0-4811-01A-01D-1501-10		48063502	54467890	72	6822											
VPS13C	54832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	62254726	62254726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	62254726	T	C	62254726	3	2	108	1	0	0	0	0	1	0	0	0	17203	1744	61	3	8050	3	VPS13C	15	62254726	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	14191224	62254726	40276666	73	6823											
ALPK3	57538	hgsc.bcm.edu;ucsc.edu	37	15	85407697	85407697	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	85407697	C	-	85407697	7	5	108	1	0	1	0	1	0	0	0	0	546	518	18	0	5176	0	ALPK3	15	85407697	Frame_Shift_Del	DEL	C	TCGA-B0-4811-01A-01D-1501-10	23152971	85407697	17123695	74	6824											
OR4F6	390648	hgsc.bcm.edu;ucsc.edu	37	15	102346601	102346601	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	102346601	A	-	102346601	7	5	108	1	0	1	0	1	0	0	0	0	11073	247	9	0	681	0	OR4F6	15	102346601	Frame_Shift_Del	DEL	A	TCGA-B0-4811-01A-01D-1501-10	16938904	102346601	184791	75	6825											
HN1L	90861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1735538	1735538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	1735538	T	G	1735538	3	3	108	1	0	0	0	0	1	0	0	0	7257	1841	64	5	149	5	HN1L	16	1735538	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10		1735538	88619215	76	6826											
FAM18A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	10864178	10864178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	10864178	C	A	10864178	3	1	108	1	0	0	0	0	1	0	0	0	5522	507	18	4	52	4	FAM18A	16	10864178	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	9128640	10864178	79490575	77	6827											
QPRT	23475	broad.mit.edu;ucsc.edu	37	16	29706503	29706503	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	29706503	C	C	29706503	3	2	108	1	0	0	0	0	1	0	0	0	12889	1087	38	4	538	4	QPRT	16	29706503	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	18842325	29706503	60648250	78	6828											
SEPHS2	22928	broad.mit.edu;ucsc.edu	37	16	30456187	30456187	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	30456187	G	G	30456187	3	3	108	1	0	0	0	0	1	0	0	0	14068	420	15	3	488	3	SEPHS2	16	30456187	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10	749684	30456187	59898566	79	6829											
PRR14	78994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30667486	30667486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	30667486	G	A	30667486	3	1	108	1	0	0	0	0	1	0	0	0	12596	1261	44	2	1654	2	PRR14	16	30667486	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	211299	30667486	59687267	80	6830											
IRX6	79190	broad.mit.edu	37	16	55362619	55362619	+	Silent	SNP	T	C	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	55362619	C	C	55362619	2	2	108	1	0	0	0	0	0	0	0	1	7855	1567	55	3		3	IRX6	16	55362619	Silent	SNP	T	TCGA-B0-4811-01A-01D-1501-10	24695133	55362619	34992134	81	6831											
CDH8	1006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	61854956	61854956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	61854956	C	G	61854956	3	3	108	1	0	0	0	0	1	0	0	0	3118	680	24	4	1530	4	CDH8	16	61854956	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	6492337	61854956	28499797	82	6832											
ESRP2	80004	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68264909	68264909	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	68264909	G	C	68264909	3	2	108	1	0	0	0	0	1	0	0	0	5261	1261	44	4	432	4	ESRP2	16	68264909	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	6409953	68264909	22089844	83	6833											
FTSJD1	55783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71318090	71318090	+	Silent	SNP	T	T	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	71318090	T	A	71318090	2	1	108	1	0	0	0	0	0	0	0	1	6097	1744	61	5		5	FTSJD1	16	71318090	Silent	SNP	T	TCGA-B0-4811-01A-01D-1501-10	3053181	71318090	19036663	84	6834											
PRPF8	10594	broad.mit.edu;ucsc.edu	37	17	1564002	1564002	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	1564002	A	A	1564002	3	1	108	1	0	0	0	0	1	0	0	0	12585	1493	52	5	2439	5	PRPF8	17	1564002	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10		1564002	79631208	85	6835											
VMO1	284013	broad.mit.edu	37	17	4689557	4689557	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	4689557	T	T	4689557	3	4	108	1	0	0	0	0	1	0	0	0	17189	652	23	1	563	1	VMO1	17	4689557	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	3125555	4689557	76505653	86	6836											
CAMTA2	23125	broad.mit.edu;ucsc.edu	37	17	4877038	4877038	+	Silent	SNP	T	C	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	4877038	C	C	4877038	2	2	108	1	0	0	0	0	0	0	0	1	2616	1606	56	3		3	CAMTA2	17	4877038	Silent	SNP	T	TCGA-B0-4811-01A-01D-1501-10	187481	4877038	76318172	87	6837											
ZNF232	7775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5009701	5009701	+	Silent	SNP	A	A	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	5009701	A	G	5009701	2	3	108	1	0	0	0	0	0	0	0	1	17797	175	7	3		3	ZNF232	17	5009701	Silent	SNP	A	TCGA-B0-4811-01A-01D-1501-10	132663	5009701	76185509	88	6838											
MYH1	4619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10404734	10404734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	10404734	G	A	10404734	3	1	108	1	0	0	0	0	1	0	0	0	10036	1174	41	2	2444	2	MYH1	17	10404734	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	5395033	10404734	70790476	89	6839											
SLC5A10	125206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18863863	18863863	+	Silent	SNP	C	C	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	18863863	C	T	18863863	2	4	108	1	0	0	0	0	0	0	0	1	14675	874	31	1		1	SLC5A10	17	18863863	Silent	SNP	C	TCGA-B0-4811-01A-01D-1501-10	8459129	18863863	62331347	90	6840											
MYO18A	399687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27438508	27438508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	27438508	C	A	27438508	3	1	108	1	0	0	0	0	1	0	0	0	10072	595	21	4	3434	4	MYO18A	17	27438508	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	8574645	27438508	53756702	91	6841			2	15		2	2	13	N	T_C	4.4965e-05
MYO18A	399687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27438520	27438520	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	27438520	T	G	27438520	3	3	108	1	0	0	0	0	1	0	0	0	10072	1493	52	5	3446	5	MYO18A	17	27438520	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	12	27438520	53756690	92	6842			2	15		2	2	13	N	T_C	4.4965e-05
TAF15	8148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34147197	34147197	+	Silent	SNP	T	T	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	34147197	T	C	34147197	2	2	108	1	0	0	0	0	0	0	0	1	15530	1490	52	3		3	TAF15	17	34147197	Silent	SNP	T	TCGA-B0-4811-01A-01D-1501-10	6708677	34147197	47048013	93	6843											
COASY	80347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40715165	40715165	+	Silent	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	40715165	G	A	40715165	2	1	108	1	0	0	0	0	0	0	0	1	3654	1194	42	2		2	COASY	17	40715165	Silent	SNP	G	TCGA-B0-4811-01A-01D-1501-10	6567968	40715165	40480045	94	6844											
TMUB2	79089	broad.mit.edu	37	17	42266658	42266658	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	42266658	A	A	42266658	3	1	108	1	0	0	0	0	1	0	0	0	16277	855	30	4	310	4	TMUB2	17	42266658	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	1551493	42266658	38928552	95	6845											
CLTC	1213	broad.mit.edu;ucsc.edu	37	17	57746161	57746161	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	57746161	T	T	57746161	3	4	108	1	0	0	0	0	1	0	0	0	3568	217	8	5	2206	5	CLTC	17	57746161	Missense_Mutation	SNP	A	TCGA-B0-4811-01A-01D-1501-10	15479503	57746161	23449049	96	6846											
RAC3	5881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	79990881	79990881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	79990881	C	T	79990881	3	4	108	1	0	0	0	0	1	0	0	0	12989	739	26	2	298	2	RAC3	17	79990881	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	22244720	79990881	1204329	97	6847											
EPB41L3	23136	broad.mit.edu;hgsc.bcm.edu	37	18	5396318	5396318	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	5396318	T	A	5396318	3	1	108	1	0	0	0	0	1	0	0	0	5156	1609	56	5	424	5	EPB41L3	18	5396318	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10		5396318	72680930	98	6848											
FAM59A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	29847906	29847906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	29847906	C	A	29847906	3	1	108	1	0	0	0	0	1	0	0	0	5599	680	24	4	75	4	FAM59A	18	29847906	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	24451588	29847906	48229342	99	6849											
SERPINB8	5271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	61654390	61654390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	61654390	G	A	61654390	3	1	108	1	0	0	0	0	1	0	0	0	14120	1261	44	2	1038	2	SERPINB8	18	61654390	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	31806484	61654390	16422858	100	6850											
MUC16	94025	hgsc.bcm.edu	37	19	9048364	9048369	+	In_Frame_Del	DEL	AGTTGG	AGTTGG	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	AGTTGG	AGTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	9048369	AGTTGG	-	9048364	7	5	108	1	0	1	0	1	0	0	0	0	9980	175	7	0	10576	0	MUC16	19	9048364	In_Frame_Del	DEL	AGTTGG	TCGA-B0-4811-01A-01D-1501-10		9048364	50080619	101	6851											
ZNF799	90576	broad.mit.edu;hgsc.bcm.edu	37	19	12501322	12501322	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	12501322	A	-	12501322	7	5	108	1	0	1	0	1	0	0	0	0	18178	127	5	0	45	0	ZNF799	19	12501322	Frame_Shift_Del	DEL	A	TCGA-B0-4811-01A-01D-1501-10	3452958	12501322	46627661	102	6852											
SLC27A1	376497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17611618	17611618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	17611618	G	T	17611618	3	4	108	1	0	0	0	0	1	0	0	0	14538	991	35	4	1607	4	SLC27A1	19	17611618	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	5110296	17611618	41517365	103	6853											
PDE4C	5143	broad.mit.edu	37	19	18322678	18322678	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	18322678	A	A	18322678	3	1	108	1	0	0	0	0	1	0	0	0	11648	1145	40	1	464	1	PDE4C	19	18322678	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	711060	18322678	40806305	104	6854											
ZNF345	25850	hgsc.bcm.edu	37	19	37368165	37368166	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	37368166	-	T	37368165	7	5	108	1	0	1	1	0	0	0	0	0	17871	507	18	0	435	0	ZNF345	19	37368165	Frame_Shift_Ins	INS	-	TCGA-B0-4811-01A-01D-1501-10	19045487	37368165	21760818	105	6855	70	2									
ZNF345	25850	hgsc.bcm.edu	37	19	37368169	37368169	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	-	37368169	A	-	37368169	7	5	108	1	0	1	0	1	0	0	0	0	17871	449	16	0	439	0	ZNF345	19	37368169	Frame_Shift_Del	DEL	A	TCGA-B0-4811-01A-01D-1501-10	4	37368169	21760814	106	6856	70	2									
LENG9	94059	broad.mit.edu;ucsc.edu	37	19	54973869	54973869	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	54973869	C	C	54973869	3	2	108	1	0	0	0	0	1	0	0	0	8732	1203	42	4	602	4	LENG9	19	54973869	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	17605700	54973869	4155114	107	6857											
ZNF256	10172	broad.mit.edu	37	19	58453894	58453894	+	Silent	SNP	T	A	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	58453894	A	A	58453894	2	1	108	1	0	0	0	0	0	0	0	1	17811	1396	49	5		5	ZNF256	19	58453894	Silent	SNP	T	TCGA-B0-4811-01A-01D-1501-10	3480025	58453894	675089	108	6858	71	2									
ZNF256	10172	broad.mit.edu	37	19	58453896	58453896	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	G	58453896	G	G	58453896	3	3	108	1	0	0	0	0	1	0	0	0	17811	1435	50	5	1607	5	ZNF256	19	58453896	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	2	58453896	675087	109	6859	71	2									
ANGPT4	51378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	896710	896710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	896710	G	A	896710	3	1	108	1	0	0	0	0	1	0	0	0	612	1203	42	2	1399	2	ANGPT4	20	896710	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10		896710	62128810	110	6860											
GZF1	64412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	23345603	23345603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	23345603	G	T	23345603	3	4	108	1	0	0	0	0	1	0	0	0	6921	942	33	4	585	4	GZF1	20	23345603	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	22448893	23345603	39679917	111	6861											
PDRG1	81572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30538174	30538174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	30538174	G	A	30538174	3	1	108	1	0	0	0	0	1	0	0	0	11697	1029	36	2	313	2	PDRG1	20	30538174	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10	7192571	30538174	32487346	112	6862											
ARFGEF2	10564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47604916	47604916	+	Silent	SNP	C	C	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	47604916	C	T	47604916	2	4	108	1	0	0	0	0	0	0	0	1	853	477	17	2		2	ARFGEF2	20	47604916	Silent	SNP	C	TCGA-B0-4811-01A-01D-1501-10	17066742	47604916	15420604	113	6863											
LAMA5	3911	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	60895846	60895846	+	Silent	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	60895846	G	A	60895846	2	1	108	1	0	0	0	0	0	0	0	1	8616	1335	47	2		2	LAMA5	20	60895846	Silent	SNP	G	TCGA-B0-4811-01A-01D-1501-10	13290930	60895846	2129674	114	6864											
MCM3AP	8888	broad.mit.edu;ucsc.edu	37	21	47685911	47685911	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	47685911	A	A	47685911	3	1	108	1	0	0	0	0	1	0	0	0	9395	1783	62	5	3055	5	MCM3AP	21	47685911	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10		47685911	443984	115	6865											
IL2RB	3560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	37539570	37539570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	A	37539570	G	A	37539570	3	1	108	1	0	0	0	0	1	0	0	0	7694	1116	39	1	1493	1	IL2RB	22	37539570	Missense_Mutation	SNP	G	TCGA-B0-4811-01A-01D-1501-10		37539570	13764996	116	6866											
EP300	2033	broad.mit.edu;ucsc.edu	37	22	41573737	41573737	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	C	41573737	C	C	41573737	3	2	108	1	0	0	0	0	1	0	0	0	5150	1667	58	3	6144	3	EP300	22	41573737	Missense_Mutation	SNP	T	TCGA-B0-4811-01A-01D-1501-10	4034167	41573737	9730829	117	6867											
DCAF8L2	347442	broad.mit.edu	37	X	27765420	27765421	+	In_Frame_Ins	INS	-	ATACAA	ATACAA	rs34350719	alternate_allele	TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	ATACAA	27765421	ATACAA	ATACAA	27765420	7	5	108	1	0	1	1	0	0	0	0	0	4280	991	35	0	410	0	DCAF8L2	23	27765420	In_Frame_Ins	INS	-	TCGA-B0-4811-01A-01D-1501-10		27765420	127505140	118	6868											
COL4A6	1288	broad.mit.edu	37	X	107400258	107400258	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4811-01A-01D-1501-10	TCGA-B0-4811-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a46182dc-2481-4911-9f6b-9532666f9f8c	96a5756f-57e4-4f88-9a51-b92d406a578a	T	107400258	T	T	107400258	3	4	108	1	0	0	0	0	1	0	0	0	3697	768	27	1	31	1	COL4A6	23	107400258	Missense_Mutation	SNP	C	TCGA-B0-4811-01A-01D-1501-10	79634838	107400258	47870302	119	6869											
FCRL5	83416	hgsc.bcm.edu;ucsc.edu	37	1	157490914	157490914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	157490914	G	A	157490914	3	1	109	1	0	0	0	0	1	0	0	0	5805	1087	38	1	553	1	FCRL5	1	157490914	Missense_Mutation	SNP	G	TCGA-B0-4813-01A-01D-1361-10		157490914	91759707	1	6870											
TRMT61B	55006	hgsc.bcm.edu	37	2	29093128	29093128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	29093128	A	G	29093128	3	3	109	1	0	0	0	0	1	0	0	0	16582	159	6	3	1445	3	TRMT61B	2	29093128	Missense_Mutation	SNP	A	TCGA-B0-4813-01A-01D-1361-10		29093128	214106245	2	6871											
REL	5966	hgsc.bcm.edu	37	2	61147174	61147174	+	Splice_Site	SNP	A	A	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	61147174	A	C	61147174	5	2	109	1	0	0	0	0	0	0	1	0	13228	202	7	5	882	5	REL	2	61147174	Splice_Site	SNP	A	TCGA-B0-4813-01A-01D-1361-10	32054046	61147174	182052199	3	6872											
FABP1	2168	hgsc.bcm.edu	37	2	88427489	88427489	+	Silent	SNP	T	T	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	88427489	T	C	88427489	2	2	109	1	0	0	0	0	0	0	0	1	5359	1606	56	3		3	FABP1	2	88427489	Silent	SNP	T	TCGA-B0-4813-01A-01D-1361-10	27280315	88427489	154771884	4	6873											
CHST10	9486	hgsc.bcm.edu;ucsc.edu	37	2	101009958	101009958	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	101009958	C	A	101009958	4	1	109	1	0	0	0	0	0	1	0	0	3400	835	29	4	254	4	CHST10	2	101009958	Nonsense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	12582469	101009958	142189415	5	6874											
PSD4	23550	hgsc.bcm.edu	37	2	113940963	113940963	+	Silent	SNP	T	T	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	113940963	T	G	113940963	2	3	109	1	0	0	0	0	0	0	0	1	12659	1567	55	5		5	PSD4	2	113940963	Silent	SNP	T	TCGA-B0-4813-01A-01D-1361-10	12931005	113940963	129258410	6	6875											
PROC	5624	hgsc.bcm.edu;ucsc.edu	37	2	128178989	128178989	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	128178989	G	C	128178989	3	2	109	1	0	0	0	0	1	0	0	0	12555	991	35	4	207	4	PROC	2	128178989	Missense_Mutation	SNP	G	TCGA-B0-4813-01A-01D-1361-10	14238026	128178989	115020384	7	6876											
CCDC150	284992	hgsc.bcm.edu;ucsc.edu	37	2	197530388	197530388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	197530388	T	C	197530388	3	2	109	1	0	0	0	0	1	0	0	0	2787	1696	59	3	765	3	CCDC150	2	197530388	Missense_Mutation	SNP	T	TCGA-B0-4813-01A-01D-1361-10	69351399	197530388	45668985	8	6877											
AOX1	316	hgsc.bcm.edu	37	2	201474083	201474083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	201474083	G	A	201474083	3	1	109	1	0	0	0	0	1	0	0	0	729	942	33	2	1145	2	AOX1	2	201474083	Missense_Mutation	SNP	G	TCGA-B0-4813-01A-01D-1361-10	3943695	201474083	41725290	9	6878											
PIKFYVE	200576	hgsc.bcm.edu	37	2	209190805	209190805	+	Silent	SNP	C	C	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	209190805	C	A	209190805	2	1	109	1	0	0	0	0	0	0	0	1	11931	842	30	4		4	PIKFYVE	2	209190805	Silent	SNP	C	TCGA-B0-4813-01A-01D-1361-10	7716722	209190805	34008568	10	6879											
IQCB1	9657	hgsc.bcm.edu	37	3	121544945	121544945	+	Silent	SNP	G	G	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	121544945	G	A	121544945	2	1	109	1	0	0	0	0	0	0	0	1	7810	933	33	2		2	IQCB1	3	121544945	Silent	SNP	G	TCGA-B0-4813-01A-01D-1361-10		121544945	76477485	11	6880											
COL6A5	256076	hgsc.bcm.edu	37	3	130095639	130095639	+	Silent	SNP	A	A	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	130095639	A	G	130095639	2	3	109	1	0	0	0	0	0	0	0	1	3704	349	13	3		3	COL6A5	3	130095639	Silent	SNP	A	TCGA-B0-4813-01A-01D-1361-10	8550694	130095639	67926791	12	6881											
GAK	2580	hgsc.bcm.edu	37	4	860311	860311	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	860311	C	G	860311	3	3	109	1	0	0	0	0	1	0	0	0	6202	594	21	4	1079	4	GAK	4	860311	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10		860311	190293965	13	6882											
LIAS	11019	hgsc.bcm.edu;ucsc.edu	37	4	39469138	39469138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	39469138	G	T	39469138	3	4	109	1	0	0	0	0	1	0	0	0	8785	1188	41	4	635	4	LIAS	4	39469138	Missense_Mutation	SNP	G	TCGA-B0-4813-01A-01D-1361-10	38608827	39469138	151685138	14	6883											
LPHN3	23284	hgsc.bcm.edu;ucsc.edu	37	4	62801740	62801740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	62801740	C	A	62801740	3	1	109	1	0	0	0	0	1	0	0	0	8924	507	18	4	2238	4	LPHN3	4	62801740	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	23332602	62801740	128352536	15	6884											
MAP9	79884	hgsc.bcm.edu	37	4	156276291	156276291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	156276291	C	A	156276291	3	1	109	1	0	0	0	0	1	0	0	0	9277	478	17	4	651	4	MAP9	4	156276291	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	93474551	156276291	34877985	16	6885											
HAPLN1	1404	hgsc.bcm.edu	37	5	82937598	82937598	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	82937598	A	T	82937598	3	4	109	1	0	0	0	0	1	0	0	0	6961	14	1	5	286	5	HAPLN1	5	82937598	Missense_Mutation	SNP	A	TCGA-B0-4813-01A-01D-1361-10		82937598	97977662	17	6886											
PDSS2	57107	hgsc.bcm.edu	37	6	107655456	107655456	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	-	107655456	C	-	107655456	7	5	109	1	0	1	0	1	0	0	0	0	11701	797	28	0	850	0	PDSS2	6	107655456	Frame_Shift_Del	DEL	C	TCGA-B0-4813-01A-01D-1361-10		107655456	63459611	18	6887											
MTHFD1L	25902	hgsc.bcm.edu;ucsc.edu	37	6	151358209	151358209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	151358209	C	T	151358209	3	4	109	1	0	0	0	0	1	0	0	0	9935	643	23	1	2905	1	MTHFD1L	6	151358209	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	43702753	151358209	19756858	19	6888											
LPA	4018	hgsc.bcm.edu	37	6	161027525	161027525	+	Silent	SNP	C	C	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	161027525	C	T	161027525	2	4	109	1	0	0	0	0	0	0	0	1	8910	680	24	2		2	LPA	6	161027525	Silent	SNP	C	TCGA-B0-4813-01A-01D-1361-10	9669316	161027525	10087542	20	6889											
THBS2	7058	hgsc.bcm.edu;ucsc.edu	37	6	169649025	169649025	+	Silent	SNP	G	G	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	169649025	G	T	169649025	2	4	109	1	0	0	0	0	0	0	0	1	15866	1280	45	4		4	THBS2	6	169649025	Silent	SNP	G	TCGA-B0-4813-01A-01D-1361-10	8621500	169649025	1466042	21	6890											
RADIL	55698	hgsc.bcm.edu;ucsc.edu	37	7	4839090	4839090	+	Silent	SNP	G	G	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	4839090	G	A	4839090	2	1	109	1	0	0	0	0	0	0	0	1	13010	1074	38	1		1	RADIL	7	4839090	Silent	SNP	G	TCGA-B0-4813-01A-01D-1361-10		4839090	154299573	22	6891											
MYO1G	64005	hgsc.bcm.edu	37	7	45009718	45009718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	45009718	T	A	45009718	3	1	109	1	0	0	0	0	1	0	0	0	10081	1609	56	5	1855	5	MYO1G	7	45009718	Missense_Mutation	SNP	T	TCGA-B0-4813-01A-01D-1361-10	40170628	45009718	114128945	23	6892											
SLC25A13	10165	hgsc.bcm.edu	37	7	95799395	95799395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	95799395	A	G	95799395	3	3	109	1	0	0	0	0	1	0	0	0	14488	246	9	3	778	3	SLC25A13	7	95799395	Missense_Mutation	SNP	A	TCGA-B0-4813-01A-01D-1361-10	50789677	95799395	63339268	24	6893											
SPAM1	6677	hgsc.bcm.edu	37	7	123594531	123594531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	123594531	T	A	123594531	3	1	109	1	0	0	0	0	1	0	0	0	14999	1406	49	5	909	5	SPAM1	7	123594531	Missense_Mutation	SNP	T	TCGA-B0-4813-01A-01D-1361-10	27795136	123594531	35544132	25	6894											
CHD7	55636	hgsc.bcm.edu	37	8	61763833	61763833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	61763833	T	C	61763833	3	2	109	1	0	0	0	0	1	0	0	0	3332	1783	62	3	5726	3	CHD7	8	61763833	Missense_Mutation	SNP	T	TCGA-B0-4813-01A-01D-1361-10		61763833	84600189	26	6895											
FER1L6	654463	hgsc.bcm.edu;ucsc.edu	37	8	124987507	124987507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	124987507	C	A	124987507	3	1	109	1	0	0	0	0	1	0	0	0	5822	507	18	4	670	4	FER1L6	8	124987507	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	63223674	124987507	21376515	27	6896											
PHF20L1	51105	hgsc.bcm.edu	37	8	133816091	133816091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	133816091	G	A	133816091	3	1	109	1	0	0	0	0	1	0	0	0	11839	1319	46	2	557	2	PHF20L1	8	133816091	Missense_Mutation	SNP	G	TCGA-B0-4813-01A-01D-1361-10	8828584	133816091	12547931	28	6897											
SVIL	6840	hgsc.bcm.edu	37	10	29840075	29840075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	29840075	A	G	29840075	3	3	109	1	0	0	0	0	1	0	0	0	15433	217	8	3	6498	3	SVIL	10	29840075	Missense_Mutation	SNP	A	TCGA-B0-4813-01A-01D-1361-10		29840075	105694672	29	6898											
KCNMA1	3778	hgsc.bcm.edu;ucsc.edu	37	10	78669819	78669819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	78669819	C	T	78669819	3	4	109	1	0	0	0	0	1	0	0	0	8080	884	31	1	703	1	KCNMA1	10	78669819	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	48829744	78669819	56864928	30	6899											
SYT12	91683	hgsc.bcm.edu;ucsc.edu	37	11	66811136	66811136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	66811136	T	G	66811136	3	3	109	1	0	0	0	0	1	0	0	0	15480	1609	56	5	663	5	SYT12	11	66811136	Missense_Mutation	SNP	T	TCGA-B0-4813-01A-01D-1361-10		66811136	68195380	31	6900											
CNTN1	1272	hgsc.bcm.edu	37	12	41327530	41327530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	41327530	C	A	41327530	3	1	109	1	0	0	0	0	1	0	0	0	3642	912	32	4	865	4	CNTN1	12	41327530	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10		41327530	92524365	32	6901											
SLC16A7	9194	hgsc.bcm.edu	37	12	60165123	60165123	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	60165123	T	G	60165123	3	3	109	1	0	0	0	0	1	0	0	0	14426	1551	54	5	347	5	SLC16A7	12	60165123	Missense_Mutation	SNP	T	TCGA-B0-4813-01A-01D-1361-10	18837593	60165123	73686772	33	6902											
BEST3	144453	hgsc.bcm.edu;ucsc.edu	37	12	70048909	70048909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	70048909	G	T	70048909	3	4	109	1	0	0	0	0	1	0	0	0	1406	1165	41	4	225	4	BEST3	12	70048909	Missense_Mutation	SNP	G	TCGA-B0-4813-01A-01D-1361-10	9883786	70048909	63802986	34	6903											
RBM19	9904	hgsc.bcm.edu;ucsc.edu	37	12	114380203	114380203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	114380203	C	T	114380203	3	4	109	1	0	0	0	0	1	0	0	0	13134	623	22	2	1263	2	RBM19	12	114380203	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	44331294	114380203	19471692	35	6904											
NOS1	4842	hgsc.bcm.edu	37	12	117662919	117662919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	117662919	C	A	117662919	3	1	109	1	0	0	0	0	1	0	0	0	10548	652	23	4	596	4	NOS1	12	117662919	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	3282716	117662919	16188976	36	6905											
SYNE2	23224	hgsc.bcm.edu;ucsc.edu	37	14	64496675	64496675	+	Silent	SNP	A	A	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	64496675	A	G	64496675	2	3	109	1	0	0	0	0	0	0	0	1	15458	175	7	3		3	SYNE2	14	64496675	Silent	SNP	A	TCGA-B0-4813-01A-01D-1361-10		64496675	42852865	37	6906											
KIAA0284	0	hgsc.bcm.edu;ucsc.edu	37	14	105356097	105356097	+	Splice_Site	SNP	T	T	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	105356097	T	G	105356097	5	3	109	1	0	0	0	0	0	0	1	0	8173	1710	59	5	3926	5	KIAA0284	14	105356097	Splice_Site	SNP	T	TCGA-B0-4813-01A-01D-1361-10	40859422	105356097	1993443	38	6907											
GABRB3	2562	hgsc.bcm.edu;ucsc.edu	37	15	26812770	26812770	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	26812770	A	C	26812770	3	2	109	1	0	0	0	0	1	0	0	0	6175	72	3	5	640	5	GABRB3	15	26812770	Missense_Mutation	SNP	A	TCGA-B0-4813-01A-01D-1361-10		26812770	75718622	39	6908											
GATM	2628	hgsc.bcm.edu;ucsc.edu	37	15	45654362	45654362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	45654362	T	C	45654362	3	2	109	1	0	0	0	0	1	0	0	0	6270	1464	51	3	58	3	GATM	15	45654362	Missense_Mutation	SNP	T	TCGA-B0-4813-01A-01D-1361-10	18841592	45654362	56877030	40	6909											
RNPS1	10921	hgsc.bcm.edu;ucsc.edu	37	16	2314218	2314218	+	Silent	SNP	G	G	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	2314218	G	C	2314218	2	2	109	1	0	0	0	0	0	0	0	1	13524	1219	43	4		4	RNPS1	16	2314218	Silent	SNP	G	TCGA-B0-4813-01A-01D-1361-10		2314218	88040535	41	6910											
PRKAR1A	5573	hgsc.bcm.edu;ucsc.edu	37	17	66511547	66511547	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	66511547	T	A	66511547	3	1	109	1	0	0	0	0	1	0	0	0	12513	1667	58	5	9	5	PRKAR1A	17	66511547	Missense_Mutation	SNP	T	TCGA-B0-4813-01A-01D-1361-10		66511547	14683663	42	6911											
MOCOS	55034	hgsc.bcm.edu	37	18	33793366	33793366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	33793366	G	A	33793366	3	1	109	1	0	0	0	0	1	0	0	0	9696	1058	37	1	1282	1	MOCOS	18	33793366	Missense_Mutation	SNP	G	TCGA-B0-4813-01A-01D-1361-10		33793366	44283882	43	6912											
DCC	1630	hgsc.bcm.edu;ucsc.edu	37	18	50923805	50923805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	50923805	C	T	50923805	3	4	109	1	0	0	0	0	1	0	0	0	4284	536	19	1	2886	1	DCC	18	50923805	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	17130439	50923805	27153443	44	6913											
ZFR2	23217	hgsc.bcm.edu	37	19	3833722	3833722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	3833722	A	T	3833722	3	4	109	1	0	0	0	0	1	0	0	0	17672	391	14	5	2568	5	ZFR2	19	3833722	Missense_Mutation	SNP	A	TCGA-B0-4813-01A-01D-1361-10		3833722	55295261	45	6914											
ZNF791	163049	hgsc.bcm.edu;ucsc.edu	37	19	12739350	12739350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	12739350	C	T	12739350	3	4	109	1	0	0	0	0	1	0	0	0	18175	913	32	2	1021	2	ZNF791	19	12739350	Missense_Mutation	SNP	C	TCGA-B0-4813-01A-01D-1361-10	8905628	12739350	46389633	46	6915											
PDE4C	5143	hgsc.bcm.edu	37	19	18327573	18327573	+	Missense_Mutation	SNP	A	A	T	rs144273719	alternate_allele	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	18327573	A	T	18327573	3	4	109	1	0	0	0	0	1	0	0	0	11648	188	7	5	691	5	PDE4C	19	18327573	Missense_Mutation	SNP	A	TCGA-B0-4813-01A-01D-1361-10	5588223	18327573	40801410	47	6916											
ZNF100	163227	hgsc.bcm.edu	37	19	21910451	21910451	+	Silent	SNP	A	A	C	rs75062026		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	21910451	A	C	21910451	2	2	109	1	0	0	0	0	0	0	0	1	17725	291	11	5		5	ZNF100	19	21910451	Silent	SNP	A	TCGA-B0-4813-01A-01D-1361-10	3582878	21910451	37218532	48	6917											
ZNF574	64763	hgsc.bcm.edu	37	19	42584386	42584386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	42584386	T	G	42584386	3	3	109	1	0	0	0	0	1	0	0	0	18018	1551	54	5	1630	5	ZNF574	19	42584386	Missense_Mutation	SNP	T	TCGA-B0-4813-01A-01D-1361-10	20673935	42584386	16544597	49	6918											
SLC4A11	83959	hgsc.bcm.edu	37	20	3210301	3210301	+	Silent	SNP	G	G	A	rs41281860	bycluster;byfrequency;by1000genomes	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	A	3210301	G	A	3210301	2	1	109	1	0	0	0	0	0	0	0	1	14665	1136	40	1		1	SLC4A11	20	3210301	Silent	SNP	G	TCGA-B0-4813-01A-01D-1361-10		3210301	59815219	50	6919											
PLCB1	23236	hgsc.bcm.edu;ucsc.edu	37	20	8713925	8713925	+	Silent	SNP	C	C	T	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	T	8713925	C	T	8713925	2	4	109	1	0	0	0	0	0	0	0	1	12034	535	19	1		1	PLCB1	20	8713925	Silent	SNP	C	TCGA-B0-4813-01A-01D-1361-10	5503624	8713925	54311595	51	6920											
KRTAP10-8	386681	hgsc.bcm.edu	37	21	46032305	46032305	+	Silent	SNP	T	T	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	46032305	T	C	46032305	2	2	109	1	0	0	0	0	0	0	0	1	8522	1596	56	3		3	KRTAP10-8	21	46032305	Silent	SNP	T	TCGA-B0-4813-01A-01D-1361-10		46032305	2097590	52	6921											
USP18	11274	hgsc.bcm.edu	37	22	18655999	18655999	+	Missense_Mutation	SNP	A	A	G	rs61731585	bycluster;byfrequency	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	18655999	A	G	18655999	3	3	109	1	0	0	0	0	1	0	0	0	17061	101	4	3	1004	3	USP18	22	18655999	Missense_Mutation	SNP	A	TCGA-B0-4813-01A-01D-1361-10		18655999	32648567	53	6922											
CYTH4	27128	hgsc.bcm.edu	37	22	37708130	37708130	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	37708130	G	C	37708130	3	2	109	1	0	0	0	0	1	0	0	0	4208	1116	39	4	1073	4	CYTH4	22	37708130	Missense_Mutation	SNP	G	TCGA-B0-4813-01A-01D-1361-10	19052131	37708130	13596436	54	6923											
PLXNB2	23654	hgsc.bcm.edu;ucsc.edu	37	22	50720489	50720489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	50720489	A	G	50720489	3	3	109	1	0	0	0	0	1	0	0	0	12131	43	2	3	2449	3	PLXNB2	22	50720489	Missense_Mutation	SNP	A	TCGA-B0-4813-01A-01D-1361-10	13012359	50720489	584077	55	6924											
ASMTL	8623	hgsc.bcm.edu	37	X	1546876	1546876	+	Silent	SNP	A	A	G	rs5948863	bycluster;by1000genomes	TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	G	1546876	A	G	1546876	2	3	109	1	0	0	0	0	0	0	0	1	1046	262	10	3		3	ASMTL	23	1546876	Silent	SNP	A	TCGA-B0-4813-01A-01D-1361-10		1546876	153723684	56	6925											
ARSD	414	hgsc.bcm.edu	37	X	2836007	2836007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4813-01A-01D-1361-10	TCGA-B0-4813-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f7a67b2e-6b62-4251-9053-87bf0abb15ef	168bd71c-e04a-41fb-96ce-65bf61c867c6	C	2836007	G	C	2836007	3	2	109	1	0	0	0	0	1	0	0	0	989	1203	42	4	1257	4	ARSD	23	2836007	Missense_Mutation	SNP	G	TCGA-B0-4813-01A-01D-1361-10	1289131	2836007	152434553	57	6926											
TP73	7161	hgsc.bcm.edu	37	1	3624323	3624323	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	3624323	C	T	3624323	4	4	110	1	0	0	0	0	0	1	0	0	16405	711	25	2	450	2	TP73	1	3624323	Nonsense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10		3624323	245626298	1	6927											
CATSPER4	378807	hgsc.bcm.edu;ucsc.edu	37	1	26520358	26520358	+	Silent	SNP	T	T	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	26520358	T	C	26520358	2	2	110	1	0	0	0	0	0	0	0	1	2692	1461	51	3		3	CATSPER4	1	26520358	Silent	SNP	T	TCGA-B0-4814-01A-01D-1361-10	22896035	26520358	222730263	2	6928											
RLF	6018	hgsc.bcm.edu	37	1	40627266	40627266	+	Silent	SNP	G	G	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	40627266	G	C	40627266	2	2	110	1	0	0	0	0	0	0	0	1	13402	1364	48	4		4	RLF	1	40627266	Silent	SNP	G	TCGA-B0-4814-01A-01D-1361-10	14106908	40627266	208623355	3	6929											
ZNF687	57592	hgsc.bcm.edu;ucsc.edu	37	1	151261955	151261955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	G	151261955	T	G	151261955	3	3	110	1	0	0	0	0	1	0	0	0	18104	1841	64	5	2587	5	ZNF687	1	151261955	Missense_Mutation	SNP	T	TCGA-B0-4814-01A-01D-1361-10	110634689	151261955	97988666	4	6930											
BCAN	63827	hgsc.bcm.edu	37	1	156626162	156626162	+	Silent	SNP	G	G	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	156626162	G	T	156626162	2	4	110	1	0	0	0	0	0	0	0	1	1345	1219	43	4		4	BCAN	1	156626162	Silent	SNP	G	TCGA-B0-4814-01A-01D-1361-10	5364207	156626162	92624459	5	6931											
CDK18	5129	hgsc.bcm.edu;ucsc.edu	37	1	205494268	205494268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	205494268	C	T	205494268	3	4	110	1	0	0	0	0	1	0	0	0	3136	840	29	2	505	2	CDK18	1	205494268	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10	48868106	205494268	43756353	6	6932											
FAM72A	729533	hgsc.bcm.edu	37	1	206153974	206153974	+	Missense_Mutation	SNP	T	T	C	rs3196187		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	206153974	T	C	206153974	3	2	110	1	0	0	0	0	1	0	0	0	5621	1812	63	3	387	3	FAM72A	1	206153974	Missense_Mutation	SNP	T	TCGA-B0-4814-01A-01D-1361-10	659706	206153974	43096647	7	6933											
OR2T29	343563	hgsc.bcm.edu	37	1	248722722	248722722	+	Missense_Mutation	SNP	T	T	C	rs1629363	bycluster;by2hit2allele	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	248722722	T	C	248722722	3	2	110	1	0	0	0	0	1	0	0	0	11029	1812	63	3	880	3	OR2T29	1	248722722	Missense_Mutation	SNP	T	TCGA-B0-4814-01A-01D-1361-10	42568748	248722722	527899	8	6934											
APOB	338	hgsc.bcm.edu;ucsc.edu	37	2	21224845	21224845	+	Silent	SNP	C	C	A	rs138421941	byfrequency;alternate_allele	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	21224845	C	A	21224845	2	1	110	1	0	0	0	0	0	0	0	1	785	871	31	4		4	APOB	2	21224845	Silent	SNP	C	TCGA-B0-4814-01A-01D-1361-10		21224845	221974528	9	6935											
IL18R1	8809	hgsc.bcm.edu;ucsc.edu	37	2	103013085	103013085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	103013085	A	C	103013085	3	2	110	1	0	0	0	0	1	0	0	0	7654	40	2	5	1403	5	IL18R1	2	103013085	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10	81788240	103013085	140186288	10	6936											
COBLL1	22837	hgsc.bcm.edu	37	2	165560994	165560994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	165560994	A	T	165560994	3	4	110	1	0	0	0	0	1	0	0	0	3656	156	6	5	2343	5	COBLL1	2	165560994	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10	62547909	165560994	77638379	11	6937											
DNAJC10	54431	hgsc.bcm.edu	37	2	183622513	183622513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	183622513	G	A	183622513	3	1	110	1	0	0	0	0	1	0	0	0	4631	942	33	2	1970	2	DNAJC10	2	183622513	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10	18061519	183622513	59576860	12	6938											
ABI2	10152	hgsc.bcm.edu;ucsc.edu	37	2	204259531	204259531	+	Silent	SNP	G	G	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	204259531	G	T	204259531	2	4	110	1	0	0	0	0	0	0	0	1	89	1277	45	4		4	ABI2	2	204259531	Silent	SNP	G	TCGA-B0-4814-01A-01D-1361-10	20637018	204259531	38939842	13	6939											
MAP2	4133	hgsc.bcm.edu;ucsc.edu	37	2	210559008	210559008	+	Missense_Mutation	SNP	C	C	T	rs146432517		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	210559008	C	T	210559008	3	4	110	1	0	0	0	0	1	0	0	0	9242	652	23	1	2128	1	MAP2	2	210559008	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10	6299477	210559008	32640365	14	6940											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188321	10188321	+	Splice_Site	SNP	G	G	T	rs5030814	bycluster;alternate_allele	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	10188321	G	T	10188321	5	4	110	1	0	0	0	0	0	0	1	0	17174	1275	44	4	470	4	VHL	3	10188321	Splice_Site	SNP	G	TCGA-B0-4814-01A-01D-1361-10		10188321	187834109	15	6941											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47162268	47162269	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	AT	AT	AT	-	AT	AT	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	-	47162269	AT	-	47162268	7	5	110	1	0	1	0	1	0	0	0	0	14144	340	12	0	3912	0	SETD2	3	47162268	Frame_Shift_Del	DEL	AT	TCGA-B0-4814-01A-01D-1361-10	36973947	47162268	150860162	16	6942											
POLQ	10721	hgsc.bcm.edu	37	3	121207099	121207099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	121207099	T	A	121207099	3	1	110	1	0	0	0	0	1	0	0	0	12215	1783	62	5	3153	5	POLQ	3	121207099	Missense_Mutation	SNP	T	TCGA-B0-4814-01A-01D-1361-10	74044831	121207099	76815331	17	6943											
SLCO2A1	6578	hgsc.bcm.edu	37	3	133674025	133674025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	133674025	C	T	133674025	3	4	110	1	0	0	0	0	1	0	0	0	14739	768	27	1	1565	1	SLCO2A1	3	133674025	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10	12466926	133674025	64348405	18	6944											
GK2	2712	hgsc.bcm.edu	37	4	80328113	80328113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	80328113	G	T	80328113	3	4	110	1	0	0	0	0	1	0	0	0	6428	1020	36	4	423	4	GK2	4	80328113	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10		80328113	110826163	19	6945											
HELQ	113510	hgsc.bcm.edu;ucsc.edu	37	4	84362515	84362515	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	84362515	A	C	84362515	4	2	110	1	0	0	0	0	0	1	0	0	7054	224	8	5	1748	5	HELQ	4	84362515	Nonsense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10	4034402	84362515	106791761	20	6946											
PAPD7	11044	hgsc.bcm.edu;ucsc.edu	37	5	6749688	6749688	+	Silent	SNP	C	C	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	6749688	C	A	6749688	2	1	110	1	0	0	0	0	0	0	0	1	11433	816	29	4		4	PAPD7	5	6749688	Silent	SNP	C	TCGA-B0-4814-01A-01D-1361-10		6749688	174165572	21	6947											
NNT	23530	hgsc.bcm.edu;ucsc.edu	37	5	43659277	43659277	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	43659277	T	A	43659277	3	1	110	1	0	0	0	0	1	0	0	0	10517	1696	59	5	2521	5	NNT	5	43659277	Missense_Mutation	SNP	T	TCGA-B0-4814-01A-01D-1361-10	36909589	43659277	137255983	22	6948											
EDIL3	10085	hgsc.bcm.edu	37	5	83402558	83402558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	83402558	T	C	83402558	3	2	110	1	0	0	0	0	1	0	0	0	4917	1812	63	3	906	3	EDIL3	5	83402558	Missense_Mutation	SNP	T	TCGA-B0-4814-01A-01D-1361-10	39743281	83402558	97512702	23	6949											
BRD8	10902	hgsc.bcm.edu	37	5	137488285	137488285	+	Silent	SNP	T	T	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	137488285	T	C	137488285	2	2	110	1	0	0	0	0	0	0	0	1	1508	1838	64	3		3	BRD8	5	137488285	Silent	SNP	T	TCGA-B0-4814-01A-01D-1361-10	54085727	137488285	43426975	24	6950											
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	37	5	139864831	139864831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	G	139864831	A	G	139864831	3	3	110	1	0	0	0	0	1	0	0	0	629	131	5	3	2042	3	ANKHD1-EIF4EBP3	5	139864831	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10	2376546	139864831	41050429	25	6951											
UIMC1	51720	hgsc.bcm.edu	37	5	176338345	176338345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	176338345	C	A	176338345	3	1	110	1	0	0	0	0	1	0	0	0	16983	623	22	4	536	4	UIMC1	5	176338345	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10	36473514	176338345	4576915	26	6952											
SIRT5	23408	hgsc.bcm.edu	37	6	13601129	13601129	+	Missense_Mutation	SNP	G	G	A	rs146449652		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	13601129	G	A	13601129	3	1	110	1	0	0	0	0	1	0	0	0	14354	1145	40	1	831	1	SIRT5	6	13601129	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10		13601129	157513938	27	6953											
THBS2	7058	hgsc.bcm.edu;ucsc.edu	37	6	169634863	169634863	+	Silent	SNP	C	C	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	169634863	C	T	169634863	2	4	110	1	0	0	0	0	0	0	0	1	15866	796	28	2		2	THBS2	6	169634863	Silent	SNP	C	TCGA-B0-4814-01A-01D-1361-10	156033734	169634863	1480204	28	6954											
KCNU1	157855	hgsc.bcm.edu;ucsc.edu	37	8	36694387	36694387	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	36694387	G	C	36694387	3	2	110	1	0	0	0	0	1	0	0	0	8100	1174	41	4	1496	4	KCNU1	8	36694387	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10		36694387	109669635	29	6955											
FER1L6	654463	hgsc.bcm.edu	37	8	125015549	125015549	+	Silent	SNP	C	C	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	125015549	C	T	125015549	2	4	110	1	0	0	0	0	0	0	0	1	5822	581	21	2		2	FER1L6	8	125015549	Silent	SNP	C	TCGA-B0-4814-01A-01D-1361-10	88321162	125015549	21348473	30	6956											
C9orf131	138724	hgsc.bcm.edu;ucsc.edu	37	9	35043871	35043871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	35043871	A	C	35043871	3	2	110	1	0	0	0	0	1	0	0	0	2459	98	4	5	1267	5	C9orf131	9	35043871	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10		35043871	106169560	31	6957											
VPS13A	23230	hgsc.bcm.edu	37	9	79910474	79910474	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	79910474	T	A	79910474	3	1	110	1	0	0	0	0	1	0	0	0	17201	1841	64	5	3654	5	VPS13A	9	79910474	Missense_Mutation	SNP	T	TCGA-B0-4814-01A-01D-1361-10	44866603	79910474	61302957	32	6958											
ZCCHC6	79670	hgsc.bcm.edu;ucsc.edu	37	9	88903626	88903626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	88903626	T	C	88903626	3	2	110	1	0	0	0	0	1	0	0	0	17604	1841	64	3	37	3	ZCCHC6	9	88903626	Missense_Mutation	SNP	T	TCGA-B0-4814-01A-01D-1361-10	8993152	88903626	52309805	33	6959											
PTCH1	5727	hgsc.bcm.edu	37	9	98240363	98240363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	98240363	G	T	98240363	3	4	110	1	0	0	0	0	1	0	0	0	12740	1116	39	4	3082	4	PTCH1	9	98240363	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10	9336737	98240363	42973068	34	6960											
ASTN2	23245	hgsc.bcm.edu	37	9	119976858	119976858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	119976858	C	A	119976858	3	1	110	1	0	0	0	0	1	0	0	0	1065	652	23	4	3384	4	ASTN2	9	119976858	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10	21736495	119976858	21236573	35	6961											
ZNF248	57209	hgsc.bcm.edu;ucsc.edu	37	10	38121983	38121983	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	38121983	A	T	38121983	3	4	110	1	0	0	0	0	1	0	0	0	17805	11	1	5	1443	5	ZNF248	10	38121983	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10		38121983	97412764	36	6962											
TPP1	1200	hgsc.bcm.edu	37	11	6638044	6638044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	6638044	C	T	6638044	3	4	110	1	0	0	0	0	1	0	0	0	16423	768	27	1	985	1	TPP1	11	6638044	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10		6638044	128368472	37	6963											
ABTB2	25841	hgsc.bcm.edu	37	11	34175904	34175904	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	34175904	A	T	34175904	3	4	110	1	0	0	0	0	1	0	0	0	103	43	2	5	297	5	ABTB2	11	34175904	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10	27537860	34175904	100830612	38	6964											
COMMD9	29099	hgsc.bcm.edu;ucsc.edu	37	11	36298648	36298648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	36298648	C	A	36298648	3	1	110	1	0	0	0	0	1	0	0	0	3725	739	26	4	265	4	COMMD9	11	36298648	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10	2122744	36298648	98707868	39	6965											
NOX4	50507	hgsc.bcm.edu	37	11	89088168	89088168	+	Silent	SNP	G	G	A	rs75735530	bycluster;byfrequency;by1000genomes	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	89088168	G	A	89088168	2	1	110	1	0	0	0	0	0	0	0	1	10565	1103	39	1		1	NOX4	11	89088168	Silent	SNP	G	TCGA-B0-4814-01A-01D-1361-10	52789520	89088168	45918348	40	6966											
ITGB7	3695	hgsc.bcm.edu	37	12	53591327	53591327	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	G	53591327	C	G	53591327	3	3	110	1	0	0	0	0	1	0	0	0	7907	623	22	4	1920	4	ITGB7	12	53591327	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10		53591327	80260568	41	6967											
NR2C1	7181	hgsc.bcm.edu;ucsc.edu	37	12	95452258	95452258	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	95452258	A	T	95452258	3	4	110	1	0	0	0	0	1	0	0	0	10629	98	4	5	1557	5	NR2C1	12	95452258	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10	41860931	95452258	38399637	42	6968											
OAS1	4938	hgsc.bcm.edu;ucsc.edu	37	12	113348901	113348901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	G	113348901	A	G	113348901	3	3	110	1	0	0	0	0	1	0	0	0	10806	72	3	3	525	3	OAS1	12	113348901	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10	17896643	113348901	20502994	43	6969											
EAPP	55837	hgsc.bcm.edu;ucsc.edu	37	14	34985595	34985595	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	34985595	G	C	34985595	3	2	110	1	0	0	0	0	1	0	0	0	4879	1029	36	4	82	4	EAPP	14	34985595	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10		34985595	72363945	44	6970											
UNC13C	440279	hgsc.bcm.edu	37	15	54435838	54435838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	54435838	G	T	54435838	3	4	110	1	0	0	0	0	1	0	0	0	16998	1290	45	4	3038	4	UNC13C	15	54435838	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10		54435838	48095554	45	6971											
ACAN	176	hgsc.bcm.edu	37	15	89398671	89398671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	89398671	G	A	89398671	3	1	110	1	0	0	0	0	1	0	0	0	117	1232	43	2	2897	2	ACAN	15	89398671	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10	34962833	89398671	13132721	46	6972											
BTBD12	0	hgsc.bcm.edu;ucsc.edu	37	16	3652234	3652234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	3652234	C	T	3652234	3	4	110	1	0	0	0	0	1	0	0	0	1542	507	18	2	4717	2	BTBD12	16	3652234	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10		3652234	86702519	47	6973											
ERCC4	2072	hgsc.bcm.edu	37	16	14015889	14015889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	G	14015889	A	G	14015889	3	3	110	1	0	0	0	0	1	0	0	0	5217	318	11	3	215	3	ERCC4	16	14015889	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10	10363655	14015889	76338864	48	6974											
WWP2	11060	hgsc.bcm.edu	37	16	69964089	69964089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	69964089	G	C	69964089	3	2	110	1	0	0	0	0	1	0	0	0	17428	1232	43	4	1423	4	WWP2	16	69964089	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10	55948200	69964089	20390664	49	6975											
CCDC144B	284047	hgsc.bcm.edu;ucsc.edu	37	17	18486814	18486815	+	Frame_Shift_Ins	INS	-	-	T	rs71208410		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	18486815	-	T	18486814	7	5	110	1	0	1	1	0	0	0	0	0	2780	623	22	0	52	0	CCDC144B	17	18486814	Frame_Shift_Ins	INS	-	TCGA-B0-4814-01A-01D-1361-10		18486814	62708396	50	6976											
FAM18B	0	hgsc.bcm.edu	37	17	18694277	18694277	+	Missense_Mutation	SNP	G	G	A	rs61075345	bycluster;by1000genomes	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	18694277	G	A	18694277	3	1	110	1	0	0	0	0	1	0	0	0	5523	1232	43	2	174	2	FAM18B	17	18694277	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10	207463	18694277	62500933	51	6977											
EFCAB3	146779	hgsc.bcm.edu;ucsc.edu	37	17	60484560	60484560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	G	60484560	A	G	60484560	3	3	110	1	0	0	0	0	1	0	0	0	4937	275	10	3	1048	3	EFCAB3	17	60484560	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10	41790283	60484560	20710650	52	6978											
SDK2	54549	hgsc.bcm.edu	37	17	71361527	71361527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	71361527	G	T	71361527	3	4	110	1	0	0	0	0	1	0	0	0	13982	1078	38	4	1375	4	SDK2	17	71361527	Missense_Mutation	SNP	G	TCGA-B0-4814-01A-01D-1361-10	10876967	71361527	9833683	53	6979											
TTYH2	94015	hgsc.bcm.edu;ucsc.edu	37	17	72256287	72256287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	72256287	C	T	72256287	3	4	110	1	0	0	0	0	1	0	0	0	16752	739	26	2	1598	2	TTYH2	17	72256287	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10	894760	72256287	8938923	54	6980											
CELF4	56853	hgsc.bcm.edu	37	18	35145518	35145518	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	35145518	A	T	35145518	3	4	110	1	0	0	0	0	1	0	0	0	3220	156	6	5	1421	5	CELF4	18	35145518	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10		35145518	42931730	55	6981											
DCC	1630	hgsc.bcm.edu;ucsc.edu	37	18	50918089	50918089	+	Silent	SNP	C	C	G	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	G	50918089	C	G	50918089	2	3	110	1	0	0	0	0	0	0	0	1	4284	900	32	4		4	DCC	18	50918089	Silent	SNP	C	TCGA-B0-4814-01A-01D-1361-10	15772571	50918089	27159159	56	6982											
RANBP3	8498	hgsc.bcm.edu	37	19	5923257	5923257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	5923257	A	C	5923257	3	2	110	1	0	0	0	0	1	0	0	0	13042	131	5	5	566	5	RANBP3	19	5923257	Missense_Mutation	SNP	A	TCGA-B0-4814-01A-01D-1361-10		5923257	53205726	57	6983											
ILVBL	10994	hgsc.bcm.edu	37	19	15228699	15228699	+	Silent	SNP	A	A	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	15228699	A	T	15228699	2	4	110	1	0	0	0	0	0	0	0	1	7722	175	7	5		5	ILVBL	19	15228699	Silent	SNP	A	TCGA-B0-4814-01A-01D-1361-10	9305442	15228699	43900284	58	6984											
ZNF43	7594	hgsc.bcm.edu	37	19	21992281	21992281	+	Silent	SNP	A	A	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	21992281	A	C	21992281	2	2	110	1	0	0	0	0	0	0	0	1	17915	233	9	5		5	ZNF43	19	21992281	Silent	SNP	A	TCGA-B0-4814-01A-01D-1361-10	6763582	21992281	37136702	59	6985											
CCDC114	93233	hgsc.bcm.edu	37	19	48809521	48809521	+	Silent	SNP	G	G	A	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	A	48809521	G	A	48809521	2	1	110	1	0	0	0	0	0	0	0	1	2753	1140	40	1		1	CCDC114	19	48809521	Silent	SNP	G	TCGA-B0-4814-01A-01D-1361-10	26817240	48809521	10319462	60	6986											
ZNF304	57343	hgsc.bcm.edu	37	19	57867886	57867886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	57867886	T	C	57867886	3	2	110	1	0	0	0	0	1	0	0	0	17845	1522	53	3	659	3	ZNF304	19	57867886	Missense_Mutation	SNP	T	TCGA-B0-4814-01A-01D-1361-10	9058365	57867886	1261097	61	6987											
PIGT	51604	hgsc.bcm.edu	37	20	44054403	44054403	+	Silent	SNP	A	A	C	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	44054403	A	C	44054403	2	2	110	1	0	0	0	0	0	0	0	1	11906	175	7	5		5	PIGT	20	44054403	Silent	SNP	A	TCGA-B0-4814-01A-01D-1361-10		44054403	18971117	62	6988											
DSCAM	1826	hgsc.bcm.edu	37	21	41516473	41516474	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	T	41516474	-	T	41516473	7	5	110	1	0	1	1	0	0	0	0	0	4770	1252	44	0	2902	0	DSCAM	21	41516473	Frame_Shift_Ins	INS	-	TCGA-B0-4814-01A-01D-1361-10		41516473	6613422	63	6989											
AIFM3	150209	hgsc.bcm.edu;ucsc.edu	37	22	21331182	21331182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	G	21331182	C	G	21331182	3	3	110	1	0	0	0	0	1	0	0	0	428	912	32	4	1237	4	AIFM3	22	21331182	Missense_Mutation	SNP	C	TCGA-B0-4814-01A-01D-1361-10		21331182	29973384	64	6990											
EWSR1	2130	hgsc.bcm.edu	37	22	29694787	29694787	+	Silent	SNP	A	A	G	novel		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	G	29694787	A	G	29694787	2	3	110	1	0	0	0	0	0	0	0	1	5298	301	11	3		3	EWSR1	22	29694787	Silent	SNP	A	TCGA-B0-4814-01A-01D-1361-10	8363605	29694787	21609779	65	6991											
MTMR3	8897	hgsc.bcm.edu	37	22	30408372	30408372	+	Silent	SNP	T	T	C	rs147773147		TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	434bfcd7-ba14-4ace-8e0d-e78592f0af0d	c063ccb3-5795-44c6-b655-45560b9cd982	C	30408372	T	C	30408372	2	2	110	1	0	0	0	0	0	0	0	1	9952	1799	63	3		3	MTMR3	22	30408372	Silent	SNP	T	TCGA-B0-4814-01A-01D-1361-10	713585	30408372	20896194	66	6992											
EXOSC10	5394	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11128077	11128077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	11128077	C	G	11128077	3	3	111	1	0	0	0	0	1	0	0	0	5316	855	30	4	50	4	EXOSC10	1	11128077	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10		11128077	238122544	1	6993											
FAM54B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26153147	26153147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	26153147	C	A	26153147	3	1	111	1	0	0	0	0	1	0	0	0	5590	681	24	4	295	4	FAM54B	1	26153147	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	15025070	26153147	223097474	2	6994											
TMEM59	9528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54506474	54506474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	54506474	A	C	54506474	3	2	111	1	0	0	0	0	1	0	0	0	16197	14	1	5	321	5	TMEM59	1	54506474	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	28353327	54506474	194744147	3	6995											
JUN	3725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	59247909	59247909	+	Silent	SNP	G	G	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	59247909	G	C	59247909	2	2	111	1	0	0	0	0	0	0	0	1	7976	1219	43	4		4	JUN	1	59247909	Silent	SNP	G	TCGA-B0-4815-01A-01D-1501-10	4741435	59247909	190002712	4	6996											
CCDC18	343099	hgsc.bcm.edu;ucsc.edu	37	1	93657661	93657661	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	93657661	G	C	93657661	3	2	111	1	0	0	0	0	1	0	0	0	2796	1281	45	4	939	4	CCDC18	1	93657661	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10	34409752	93657661	155592960	5	6997											
ARHGEF2	9181	broad.mit.edu	37	1	155932492	155932492	+	Silent	SNP	C	G	G	rs75834511	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	155932492	G	G	155932492	2	3	111	1	0	0	0	0	0	0	0	1	903	639	23	4		4	ARHGEF2	1	155932492	Silent	SNP	C	TCGA-B0-4815-01A-01D-1501-10	62274831	155932492	93318129	6	6998											
OR10J5	127385	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	159505240	159505240	+	Silent	SNP	A	A	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	159505240	A	C	159505240	2	2	111	1	0	0	0	0	0	0	0	1	10919	1	1	5		5	OR10J5	1	159505240	Silent	SNP	A	TCGA-B0-4815-01A-01D-1501-10	3572748	159505240	89745381	7	6999											
SLC9A11	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	173526501	173526501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	173526501	C	T	173526501	3	4	111	1	0	0	0	0	1	0	0	0	14724	884	31	1	2257	1	SLC9A11	1	173526501	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	14021261	173526501	75724120	8	7000											
CDC73	79577	broad.mit.edu;ucsc.edu	37	1	193181526	193181526	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	193181526	A	A	193181526	3	1	111	1	0	0	0	0	1	0	0	0	3087	1058	37	1	1123	1	CDC73	1	193181526	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10	19655025	193181526	56069095	9	7001											
RBBP5	5929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205084987	205084987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	205084987	T	C	205084987	3	2	111	1	0	0	0	0	1	0	0	0	13115	1565	54	3	1624	3	RBBP5	1	205084987	Missense_Mutation	SNP	T	TCGA-B0-4815-01A-01D-1501-10	11903461	205084987	44165634	10	7002											
C4BPA	722	broad.mit.edu;ucsc.edu	37	1	207304992	207304992	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	207304992	T	T	207304992	3	4	111	1	0	0	0	0	1	0	0	0	2251	652	23	1	1017	1	C4BPA	1	207304992	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	2220005	207304992	41945629	11	7003											
SLC35F3	148641	broad.mit.edu;ucsc.edu	37	1	234458836	234458836	+	Silent	SNP	C	T	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	234458836	T	T	234458836	2	4	111	1	0	0	0	0	0	0	0	1	14603	842	30	2		2	SLC35F3	1	234458836	Silent	SNP	C	TCGA-B0-4815-01A-01D-1501-10	27153844	234458836	14791785	12	7004											
C2orf89	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	85066361	85066361	+	Silent	SNP	G	G	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	85066361	G	T	85066361	2	4	111	1	0	0	0	0	0	0	0	1	2205	932	33	4		4	C2orf89	2	85066361	Silent	SNP	G	TCGA-B0-4815-01A-01D-1501-10		85066361	158133012	13	7005											
PAX8	7849	broad.mit.edu	37	2	113999705	113999705	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	113999705	A	A	113999705	3	1	111	1	0	0	0	0	1	0	0	0	11492	1232	43	2	774	2	PAX8	2	113999705	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10	28933344	113999705	129199668	14	7006											
POTEF	728378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	130832626	130832626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	130832626	C	T	130832626	3	4	111	1	0	0	0	0	1	0	0	0	12272	893	31	1	812	1	POTEF	2	130832626	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	16832921	130832626	112366747	15	7007											
BAZ2B	29994	broad.mit.edu;ucsc.edu	37	2	160206389	160206389	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	160206389	C	C	160206389	3	2	111	1	0	0	0	0	1	0	0	0	1332	1153	40	4	1853	4	BAZ2B	2	160206389	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10	29373763	160206389	82992984	16	7008											
SLC19A3	80704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228563604	228563604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	228563604	T	G	228563604	3	3	111	1	0	0	0	0	1	0	0	0	14443	1841	64	5	679	5	SLC19A3	2	228563604	Missense_Mutation	SNP	T	TCGA-B0-4815-01A-01D-1501-10	68357215	228563604	14635769	17	7009											
IL17RC	84818	hgsc.bcm.edu;ucsc.edu	37	3	9965582	9965582	+	Missense_Mutation	SNP	G	G	A	rs75692599	bycluster;byfrequency;by1000genomes	TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	9965582	G	A	9965582	3	1	111	1	0	0	0	0	1	0	0	0	7648	1145	40	1	883	1	IL17RC	3	9965582	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10		9965582	188056848	18	7010											
FGD5	152273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	14862883	14862883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	14862883	G	A	14862883	3	1	111	1	0	0	0	0	1	0	0	0	5843	1087	38	1	2307	1	FGD5	3	14862883	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10	4897301	14862883	183159547	19	7011											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52668807	52668807	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	52668807	G	C	52668807	4	2	111	1	0	0	0	0	0	1	0	0	11498	1294	45	4	3868	4	PBRM1	3	52668807	Nonsense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10	37805924	52668807	145353623	20	7012											
MFSD1	64747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	158545109	158545109	+	Silent	SNP	A	A	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	158545109	A	T	158545109	2	4	111	1	0	0	0	0	0	0	0	1	9534	352	13	5		5	MFSD1	3	158545109	Silent	SNP	A	TCGA-B0-4815-01A-01D-1501-10	105876302	158545109	39477321	21	7013											
CCDC149	91050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	24810062	24810062	+	Silent	SNP	G	G	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	24810062	G	A	24810062	2	1	111	1	0	0	0	0	0	0	0	1	2785	1136	40	1		1	CCDC149	4	24810062	Silent	SNP	G	TCGA-B0-4815-01A-01D-1501-10		24810062	166344214	22	7014											
LGI2	55203	broad.mit.edu;ucsc.edu	37	4	25032128	25032128	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	25032128	G	G	25032128	3	3	111	1	0	0	0	0	1	0	0	0	8759	333	12	3	1481	3	LGI2	4	25032128	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	222066	25032128	166122148	23	7015											
UGT2A3	79799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	69817431	69817431	+	Silent	SNP	G	G	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	69817431	G	A	69817431	2	1	111	1	0	0	0	0	0	0	0	1	16967	933	33	2		2	UGT2A3	4	69817431	Silent	SNP	G	TCGA-B0-4815-01A-01D-1501-10	44785303	69817431	121336845	24	7016											
SLC9A3	6550	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	482713	482713	+	Silent	SNP	G	G	A	rs150200197		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	482713	G	A	482713	2	1	111	1	0	0	0	0	0	0	0	1	14726	991	35	2		2	SLC9A3	5	482713	Silent	SNP	G	TCGA-B0-4815-01A-01D-1501-10		482713	180432547	25	7017											
MED10	84246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	6372701	6372701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	6372701	A	T	6372701	3	4	111	1	0	0	0	0	1	0	0	0	9433	188	7	5	88	5	MED10	5	6372701	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	5889988	6372701	174542559	26	7018											
CDC20B	166979	broad.mit.edu;hgsc.bcm.edu	37	5	54415634	54415634	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	54415634	A	C	54415634	3	2	111	1	0	0	0	0	1	0	0	0	3062	14	1	5	113	5	CDC20B	5	54415634	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	48042933	54415634	126499626	27	7019											
IQGAP2	10788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	75932958	75932958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	75932958	C	T	75932958	3	4	111	1	0	0	0	0	1	0	0	0	7822	838	29	2	1942	2	IQGAP2	5	75932958	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	21517324	75932958	104982302	28	7020											
PKD2L2	27039	broad.mit.edu;hgsc.bcm.edu	37	5	137257415	137257415	+	Silent	SNP	T	T	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	137257415	T	G	137257415	2	3	111	1	0	0	0	0	0	0	0	1	11975	1596	56	5		5	PKD2L2	5	137257415	Silent	SNP	T	TCGA-B0-4815-01A-01D-1501-10	61324457	137257415	43657845	29	7021											
GABRA1	2554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	161277823	161277823	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	161277823	A	T	161277823	4	4	111	1	0	0	0	0	0	1	0	0	6167	247	9	5	9	5	GABRA1	5	161277823	Nonsense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	24020408	161277823	19637437	30	7022											
GTPBP2	54676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43592732	43592732	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	43592732	A	T	43592732	3	4	111	1	0	0	0	0	1	0	0	0	6887	246	9	5	1063	5	GTPBP2	6	43592732	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10		43592732	127522335	31	7023											
GSTA2	2939	broad.mit.edu;hgsc.bcm.edu	37	6	52622679	52622679	+	Silent	SNP	G	G	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	52622679	G	A	52622679	2	1	111	1	0	0	0	0	0	0	0	1	6838	991	35	2		2	GSTA2	6	52622679	Silent	SNP	G	TCGA-B0-4815-01A-01D-1501-10	9029947	52622679	118492388	32	7024											
FIG4	9896	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	110053850	110053850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	110053850	A	G	110053850	3	3	111	1	0	0	0	0	1	0	0	0	5895	101	4	3	475	3	FIG4	6	110053850	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	57431171	110053850	61061217	33	7025											
ROS1	6098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	117665413	117665413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	117665413	A	T	117665413	3	4	111	1	0	0	0	0	1	0	0	0	13544	188	7	5	2777	5	ROS1	6	117665413	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	7611563	117665413	53449654	34	7026											
TAAR2	9287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	132938953	132938953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	132938953	A	G	132938953	3	3	111	1	0	0	0	0	1	0	0	0	15502	101	4	3	667	3	TAAR2	6	132938953	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	15273540	132938953	38176114	35	7027											
MAP3K5	4217	broad.mit.edu;ucsc.edu	37	6	136932484	136932484	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	136932484	A	A	136932484	3	1	111	1	0	0	0	0	1	0	0	0	9260	912	32	4	1719	4	MAP3K5	6	136932484	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	3993531	136932484	34182583	36	7028											
MICALL2	79778	broad.mit.edu;ucsc.edu	37	7	1478560	1478560	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	1478560	A	A	1478560	3	1	111	1	0	0	0	0	1	0	0	0	9581	971	34	2	708	2	MICALL2	7	1478560	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10		1478560	157660103	37	7029											
GTF2IRD1	9569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	73973274	73973274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	73973274	C	A	73973274	3	1	111	1	0	0	0	0	1	0	0	0	6875	796	28	4	2314	4	GTF2IRD1	7	73973274	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	72494714	73973274	85165389	38	7030											
RHBDD2	57414	broad.mit.edu;ucsc.edu	37	7	75517559	75517559	+	Silent	SNP	C	T	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	75517559	T	T	75517559	2	4	111	1	0	0	0	0	0	0	0	1	13330	697	25	2		2	RHBDD2	7	75517559	Silent	SNP	C	TCGA-B0-4815-01A-01D-1501-10	1544285	75517559	83621104	39	7031											
KRIT1	889	broad.mit.edu;ucsc.edu	37	7	91855963	91855963	+	Silent	SNP	T	C	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	91855963	C	C	91855963	2	2	111	1	0	0	0	0	0	0	0	1	8452	1519	53	3		3	KRIT1	7	91855963	Silent	SNP	T	TCGA-B0-4815-01A-01D-1501-10	16338404	91855963	67282700	40	7032											
SLC26A5	375611	hgsc.bcm.edu;ucsc.edu	37	7	103018052	103018052	+	Silent	SNP	C	C	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	103018052	C	A	103018052	2	1	111	1	0	0	0	0	0	0	0	1	14533	581	21	4		4	SLC26A5	7	103018052	Silent	SNP	C	TCGA-B0-4815-01A-01D-1501-10	11162089	103018052	56120611	41	7033											
MGAM	8972	broad.mit.edu	37	7	141762388	141762388	+	Silent	SNP	C	T	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	141762388	T	T	141762388	2	4	111	1	0	0	0	0	0	0	0	1	9548	668	24	2		2	MGAM	7	141762388	Silent	SNP	C	TCGA-B0-4815-01A-01D-1501-10	38744336	141762388	17376275	42	7034											
NDRG1	10397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	134270635	134270635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	134270635	C	T	134270635	3	4	111	1	0	0	0	0	1	0	0	0	10258	681	24	2	800	2	NDRG1	8	134270635	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10		134270635	12093387	43	7035											
KIAA0368	23392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	114184459	114184459	+	Silent	SNP	A	A	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	114184459	A	T	114184459	2	4	111	1	0	0	0	0	0	0	0	1	8178	407	15	5		5	KIAA0368	9	114184459	Silent	SNP	A	TCGA-B0-4815-01A-01D-1501-10		114184459	27028972	44	7036											
ENTPD2	954	broad.mit.edu	37	9	139944970	139944970	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	-	139944970	-	-	139944970	7	5	111	1	0	1	0	1	0	0	0	0	5141	963	34	0	708	0	ENTPD2	9	139944970	Frame_Shift_Del	DEL	G	TCGA-B0-4815-01A-01D-1501-10	25760511	139944970	1268461	45	7037											
C10orf76	79591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	103789421	103789421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	103789421	A	G	103789421	3	3	111	1	0	0	0	0	1	0	0	0	1618	72	3	3	1769	3	C10orf76	10	103789421	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10		103789421	31745326	46	7038											
NRXN2	9379	broad.mit.edu;ucsc.edu	37	11	64427892	64427892	+	Silent	SNP	T	G	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	64427892	G	G	64427892	2	3	111	1	0	0	0	0	0	0	0	1	10673	1654	58	5		5	NRXN2	11	64427892	Silent	SNP	T	TCGA-B0-4815-01A-01D-1501-10		64427892	70578624	47	7039											
B3GNT6	192134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	76750646	76750646	+	Silent	SNP	C	C	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	76750646	C	T	76750646	2	4	111	1	0	0	0	0	0	0	0	1	1261	842	30	2		2	B3GNT6	11	76750646	Silent	SNP	C	TCGA-B0-4815-01A-01D-1501-10	12322754	76750646	58255870	48	7040											
CD3E	916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118185183	118185183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	118185183	C	A	118185183	3	1	111	1	0	0	0	0	1	0	0	0	3013	507	18	4	567	4	CD3E	11	118185183	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	41434537	118185183	16821333	49	7041	72	2									
CD3E	916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118185184	118185184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	118185184	C	T	118185184	3	4	111	1	0	0	0	0	1	0	0	0	3013	594	21	2	568	2	CD3E	11	118185184	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	1	118185184	16821332	50	7042	72	2									
MCAM	4162	broad.mit.edu	37	11	119187759	119187761	+	In_Frame_Del	DEL	CAG	-	-	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	-	119187761	-	-	119187759	7	5	111	1	0	1	0	1	0	0	0	0	9375	478	17	0	1951	0	MCAM	11	119187759	In_Frame_Del	DEL	CAG	TCGA-B0-4815-01A-01D-1501-10	1002575	119187759	15818757	51	7043											
TMEM117	84216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	44537365	44537365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	44537365	G	A	44537365	3	1	111	1	0	0	0	0	1	0	0	0	16043	1291	45	2	458	2	TMEM117	12	44537365	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10		44537365	89314530	52	7044											
KRT79	338785	broad.mit.edu;ucsc.edu	37	12	53216799	53216799	+	Splice_Site	SNP	C	T	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	53216799	T	T	53216799	5	4	111	1	0	0	0	0	0	0	1	0	8499	521	18	2	251	2	KRT79	12	53216799	Splice_Site	SNP	C	TCGA-B0-4815-01A-01D-1501-10	8679434	53216799	80635096	53	7045											
ZNF740	283337	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53579212	53579212	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	53579212	T	G	53579212	3	3	111	1	0	0	0	0	1	0	0	0	18140	1461	51	5	211	5	ZNF740	12	53579212	Missense_Mutation	SNP	T	TCGA-B0-4815-01A-01D-1501-10	362413	53579212	80272683	54	7046											
P2RX4	5025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121655012	121655012	+	Silent	SNP	C	C	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	121655012	C	T	121655012	2	4	111	1	0	0	0	0	0	0	0	1	11349	755	27	1		1	P2RX4	12	121655012	Silent	SNP	C	TCGA-B0-4815-01A-01D-1501-10	68075800	121655012	12196883	55	7047											
PSMB11	122706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23511574	23511574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	23511574	C	A	23511574	3	1	111	1	0	0	0	0	1	0	0	0	12686	739	26	4	142	4	PSMB11	14	23511574	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10		23511574	83837966	56	7048											
MAP4K5	11183	hgsc.bcm.edu;ucsc.edu	37	14	50904202	50904202	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	-	50904202	C	-	50904202	7	5	111	1	0	1	0	1	0	0	0	0	9270	478	17	0	698	0	MAP4K5	14	50904202	Frame_Shift_Del	DEL	C	TCGA-B0-4815-01A-01D-1501-10	27392628	50904202	56445338	57	7049											
SPRED1	161742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	38643311	38643311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	38643311	T	C	38643311	3	2	111	1	0	0	0	0	1	0	0	0	15104	1522	53	3	807	3	SPRED1	15	38643311	Missense_Mutation	SNP	T	TCGA-B0-4815-01A-01D-1501-10		38643311	63888081	58	7050											
AAGAB	79719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	67524205	67524205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	67524205	C	T	67524205	3	4	111	1	0	0	0	0	1	0	0	0	15	884	31	1	489	1	AAGAB	15	67524205	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	28880894	67524205	35007187	59	7051											
PGPEP1L	145814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	99511748	99511748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	99511748	C	T	99511748	3	4	111	1	0	0	0	0	1	0	0	0	11811	893	31	1	44	1	PGPEP1L	15	99511748	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	31987543	99511748	3019644	60	7052											
ZNF629	23361	hgsc.bcm.edu;ucsc.edu	37	16	30794783	30794783	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	30794783	G	C	30794783	3	2	111	1	0	0	0	0	1	0	0	0	18065	1232	43	4	1747	4	ZNF629	16	30794783	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10		30794783	59559970	61	7053											
PABPN1L	390748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	88931430	88931430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	88931430	C	A	88931430	3	1	111	1	0	0	0	0	1	0	0	0	11376	637	22	4	318	4	PABPN1L	16	88931430	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	58136647	88931430	1423323	62	7054											
WDR81	124997	broad.mit.edu;hgsc.bcm.edu	37	17	1633695	1633695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	1633695	G	T	1633695	3	4	111	1	0	0	0	0	1	0	0	0	17342	1087	38	4	3757	4	WDR81	17	1633695	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10		1633695	79561515	63	7055											
FBXO39	162517	broad.mit.edu;ucsc.edu	37	17	6684202	6684202	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	6684202	C	C	6684202	3	2	111	1	0	0	0	0	1	0	0	0	5754	159	6	5	1017	5	FBXO39	17	6684202	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	5050507	6684202	74511008	64	7056											
ACACA	31	broad.mit.edu;ucsc.edu	37	17	35487038	35487038	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	35487038	G	G	35487038	3	3	111	1	0	0	0	0	1	0	0	0	106	43	2	3	1409	3	ACACA	17	35487038	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	28802836	35487038	45708172	65	7057											
ATP8B3	148229	broad.mit.edu	37	19	1792020	1792020	+	Missense_Mutation	SNP	G	A	A	rs185225335	by1000genomes	TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	1792020	A	A	1792020	3	1	111	1	0	0	0	0	1	0	0	0	1196	1115	39	1	1806	1	ATP8B3	19	1792020	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10		1792020	57336963	66	7058											
ZNF846	162993	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9868360	9868360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	9868360	G	C	9868360	3	2	111	1	0	0	0	0	1	0	0	0	18204	942	33	4	212	4	ZNF846	19	9868360	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10	8076340	9868360	49260623	67	7059											
KEAP1	9817	broad.mit.edu;ucsc.edu	37	19	10599946	10599946	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	10599946	G	G	10599946	3	3	111	1	0	0	0	0	1	0	0	0	8148	159	6	3	252	3	KEAP1	19	10599946	Missense_Mutation	SNP	A	TCGA-B0-4815-01A-01D-1501-10	731586	10599946	48529037	68	7060											
PRKACA	5566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14204026	14204026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	14204026	C	G	14204026	3	3	111	1	0	0	0	0	1	0	0	0	12507	564	20	4	105	4	PRKACA	19	14204026	Missense_Mutation	SNP	C	TCGA-B0-4815-01A-01D-1501-10	3604080	14204026	44924957	69	7061											
CHD6	84181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	40126106	40126106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	C	40126106	T	C	40126106	3	2	111	1	0	0	0	0	1	0	0	0	3331	1551	54	3	7257	3	CHD6	20	40126106	Missense_Mutation	SNP	T	TCGA-B0-4815-01A-01D-1501-10		40126106	22899414	70	7062											
C21orf59	56683	hgsc.bcm.edu;ucsc.edu	37	21	33979947	33979947	+	RNA	SNP	A	A	G	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	G	33979947	A	G	33979947	1	3	111	0	1	0	0	0	0	0	0	0	2132	377	13	3		3	C21orf59	21	33979947	RNA	SNP	A	TCGA-B0-4815-01A-01D-1501-10		33979947	14149948	71	7063											
SCARF2	91179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	20783904	20783904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	A	20783904	G	A	20783904	3	1	111	1	0	0	0	0	1	0	0	0	13897	1087	38	1	1285	1	SCARF2	22	20783904	Missense_Mutation	SNP	G	TCGA-B0-4815-01A-01D-1501-10		20783904	30520662	72	7064											
DGKK	139189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	50147057	50147057	+	Silent	SNP	G	G	T	novel		TCGA-B0-4815-01A-01D-1501-10	TCGA-B0-4815-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe091054-41d3-44fa-86a2-fad3ae58423f	6a44057f-671c-497d-b694-512161943617	T	50147057	G	T	50147057	2	4	111	1	0	0	0	0	0	0	0	1	4474	1280	45	4		4	DGKK	23	50147057	Silent	SNP	G	TCGA-B0-4815-01A-01D-1501-10		50147057	105123503	73	7065											
MACF1	23499	broad.mit.edu;ucsc.edu	37	1	39919424	39919424	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	39919424	A	A	39919424	3	1	112	1	0	0	0	0	1	0	0	0	9151	971	34	2	21096	2	MACF1	1	39919424	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10		39919424	209331197	1	7066	73	2									
MACF1	23499	broad.mit.edu;ucsc.edu	37	1	39919425	39919425	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	39919425	T	T	39919425	3	4	112	1	0	0	0	0	1	0	0	0	9151	710	25	2	21097	2	MACF1	1	39919425	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	1	39919425	209331196	2	7067	73	2									
KANK4	163782	broad.mit.edu	37	1	62740313	62740313	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	62740313	T	T	62740313	3	4	112	1	0	0	0	0	1	0	0	0	7986	603	21	2	2556	2	KANK4	1	62740313	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	22820888	62740313	186510308	3	7068											
WDR78	79819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67340463	67340463	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	67340463	C	T	67340463	5	4	112	1	0	0	0	0	0	0	1	0	17340	550	19	1	1854	1	WDR78	1	67340463	Splice_Site	SNP	C	TCGA-B0-4816-01A-01D-1501-10	4600150	67340463	181910158	4	7069											
FUBP1	8880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78425928	78425928	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	C	78425928	G	C	78425928	3	2	112	1	0	0	0	0	1	0	0	0	6099	971	34	4	437	4	FUBP1	1	78425928	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10	11085465	78425928	170824693	5	7070											
LPHN2	23266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	82372717	82372717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	82372717	C	A	82372717	3	1	112	1	0	0	0	0	1	0	0	0	8923	797	28	4	95	4	LPHN2	1	82372717	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	3946789	82372717	166877904	6	7071											
TGFBR3	7049	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	92184975	92184975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	92184975	C	A	92184975	3	1	112	1	0	0	0	0	1	0	0	0	15835	710	25	4	1127	4	TGFBR3	1	92184975	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	9812258	92184975	157065646	7	7072											
LRIG2	9860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	113633959	113633959	+	Silent	SNP	T	T	C	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	C	113633959	T	C	113633959	2	2	112	1	0	0	0	0	0	0	0	1	8952	1722	60	3		3	LRIG2	1	113633959	Silent	SNP	T	TCGA-B0-4816-01A-01D-1501-10	21448984	113633959	135616662	8	7073											
RYR2	6262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	237947442	237947442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	237947442	C	T	237947442	3	4	112	1	0	0	0	0	1	0	0	0	13782	536	19	1	12788	1	RYR2	1	237947442	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	124313483	237947442	11303179	9	7074											
THADA	63892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	43805654	43805654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	43805654	A	T	43805654	3	4	112	1	0	0	0	0	1	0	0	0	15852	11	1	5	5167	5	THADA	2	43805654	Missense_Mutation	SNP	A	TCGA-B0-4816-01A-01D-1501-10		43805654	199393719	10	7075											
DQX1	165545	broad.mit.edu;ucsc.edu	37	2	74746760	74746760	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	C	74746760	C	C	74746760	3	2	112	1	0	0	0	0	1	0	0	0	4753	69	3	5	436	5	DQX1	2	74746760	Missense_Mutation	SNP	A	TCGA-B0-4816-01A-01D-1501-10	30941106	74746760	168452613	11	7076											
SF3B1	23451	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	198260796	198260796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	198260796	C	A	198260796	3	1	112	1	0	0	0	0	1	0	0	0	14162	913	32	4	403	4	SF3B1	2	198260796	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	123514036	198260796	44938577	12	7077											
ALPI	248	broad.mit.edu;ucsc.edu	37	2	233322764	233322764	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	233322764	A	A	233322764	3	1	112	1	0	0	0	0	1	0	0	0	543	623	22	4	943	4	ALPI	2	233322764	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	35061968	233322764	9876609	13	7078											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52637689	52637689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	52637689	C	A	52637689	3	1	112	1	0	0	0	0	1	0	0	0	11498	536	19	4	2329	4	PBRM1	3	52637689	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10		52637689	145384741	14	7079											
BOD1L	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	13610222	13610222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	13610222	T	A	13610222	3	1	112	1	0	0	0	0	1	0	0	0	1483	1606	56	5	7557	5	BOD1L	4	13610222	Missense_Mutation	SNP	T	TCGA-B0-4816-01A-01D-1501-10		13610222	177544054	15	7080											
SEL1L3	23231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	25819801	25819801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	25819801	G	T	25819801	3	4	112	1	0	0	0	0	1	0	0	0	14025	1232	43	4	1939	4	SEL1L3	4	25819801	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10	12209579	25819801	165334475	16	7081											
RBPJ	3516	broad.mit.edu;ucsc.edu	37	4	26432360	26432360	+	Missense_Mutation	SNP	C	G	G	rs1064382	alternate_allele	TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	G	26432360	G	G	26432360	3	3	112	1	0	0	0	0	1	0	0	0	13174	644	23	4	1339	4	RBPJ	4	26432360	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	612559	26432360	164721916	17	7082											
KLB	152831	broad.mit.edu;hgsc.bcm.edu	37	4	39436298	39436298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	39436298	G	T	39436298	3	4	112	1	0	0	0	0	1	0	0	0	8339	1203	42	4	1300	4	KLB	4	39436298	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10	13003938	39436298	151717978	18	7083											
PTPN13	5783	broad.mit.edu;ucsc.edu	37	4	87643378	87643378	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	C	87643378	C	C	87643378	3	2	112	1	0	0	0	0	1	0	0	0	12793	43	2	5	1433	5	PTPN13	4	87643378	Missense_Mutation	SNP	A	TCGA-B0-4816-01A-01D-1501-10	48207080	87643378	103510898	19	7084											
SPEF2	79925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	35759818	35759818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	C	35759818	T	C	35759818	3	2	112	1	0	0	0	0	1	0	0	0	15047	1609	56	3	3736	3	SPEF2	5	35759818	Missense_Mutation	SNP	T	TCGA-B0-4816-01A-01D-1501-10		35759818	145155442	20	7085											
RAB3C	115827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	57913493	57913493	+	Silent	SNP	G	G	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	57913493	G	A	57913493	2	1	112	1	0	0	0	0	0	0	0	1	12946	1252	44	2		2	RAB3C	5	57913493	Silent	SNP	G	TCGA-B0-4816-01A-01D-1501-10	22153675	57913493	123001767	21	7086											
NSA2	10412	broad.mit.edu;hgsc.bcm.edu	37	5	74069762	74069762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	74069762	G	A	74069762	3	1	112	1	0	0	0	0	1	0	0	0	10675	1348	47	2	610	2	NSA2	5	74069762	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10	16156269	74069762	106845498	22	7087											
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127700355	127700355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	127700355	C	A	127700355	3	1	112	1	0	0	0	0	1	0	0	0	5710	507	18	4	6564	4	FBN2	5	127700355	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	53630593	127700355	53214905	23	7088											
RAD50	10111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131894990	131894990	+	Silent	SNP	T	T	C	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	C	131894990	T	C	131894990	2	2	112	1	0	0	0	0	0	0	0	1	12997	1673	58	3		3	RAD50	5	131894990	Silent	SNP	T	TCGA-B0-4816-01A-01D-1501-10	4194635	131894990	49020270	24	7089											
FAT2	2196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150948482	150948482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	150948482	G	A	150948482	3	1	112	1	0	0	0	0	1	0	0	0	5697	1203	42	2	13130	2	FAT2	5	150948482	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10	19053492	150948482	29966778	25	7090											
FKBPL	63943	broad.mit.edu;ucsc.edu	37	6	32097100	32097100	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	C	32097100	C	C	32097100	3	2	112	1	0	0	0	0	1	0	0	0	5923	1551	54	3	595	3	FKBPL	6	32097100	Missense_Mutation	SNP	T	TCGA-B0-4816-01A-01D-1501-10		32097100	139017967	26	7091											
PKHD1	5314	hgsc.bcm.edu;ucsc.edu	37	6	51777241	51777241	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	51777241	T	A	51777241	3	1	112	1	0	0	0	0	1	0	0	0	11978	1606	56	5	6128	5	PKHD1	6	51777241	Missense_Mutation	SNP	T	TCGA-B0-4816-01A-01D-1501-10	19680141	51777241	119337826	27	7092											
MTO1	25821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	74192199	74192199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	74192199	A	T	74192199	3	4	112	1	0	0	0	0	1	0	0	0	9960	130	5	5	1730	5	MTO1	6	74192199	Missense_Mutation	SNP	A	TCGA-B0-4816-01A-01D-1501-10	22414958	74192199	96922868	28	7093											
SEC63	11231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	108204350	108204350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	108204350	C	T	108204350	3	4	112	1	0	0	0	0	1	0	0	0	14018	869	30	2	627	2	SEC63	6	108204350	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	34012151	108204350	62910717	29	7094											
HOXA2	3199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	27140542	27140542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	27140542	C	T	27140542	3	4	112	1	0	0	0	0	1	0	0	0	7299	826	29	2	200	2	HOXA2	7	27140542	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10		27140542	131998121	30	7095											
SND1	27044	hgsc.bcm.edu;ucsc.edu	37	7	127343341	127343341	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	-	127343341	C	-	127343341	7	5	112	1	0	1	0	1	0	0	0	0	14857	747	26	0	830	0	SND1	7	127343341	Frame_Shift_Del	DEL	C	TCGA-B0-4816-01A-01D-1501-10	100202799	127343341	31795322	31	7096											
RBM28	55131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127950874	127950874	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	G	127950874	C	G	127950874	3	3	112	1	0	0	0	0	1	0	0	0	13141	912	32	4	27	4	RBM28	7	127950874	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	607533	127950874	31187789	32	7097											
FAM160B2	64760	broad.mit.edu;ucsc.edu	37	8	21951993	21951994	+	Frame_Shift_Del	DEL	TG	-	-	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	-	21951994	-	-	21951993	7	5	112	1	0	1	0	1	0	0	0	0	5475	1580	55	0	94	0	FAM160B2	8	21951993	Frame_Shift_Del	DEL	TG	TCGA-B0-4816-01A-01D-1501-10		21951993	124412029	33	7098											
NDUFB6	4712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32571008	32571008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	32571008	C	A	32571008	3	1	112	1	0	0	0	0	1	0	0	0	10292	478	17	4	175	4	NDUFB6	9	32571008	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10		32571008	108642423	34	7099											
ZNF169	169841	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	97062172	97062172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	97062172	C	T	97062172	3	4	112	1	0	0	0	0	1	0	0	0	17754	768	27	1	346	1	ZNF169	9	97062172	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	64491164	97062172	44151259	35	7100											
FKTN	2218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	108363427	108363427	+	Missense_Mutation	SNP	G	G	A	rs146951171	byfrequency	TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	108363427	G	A	108363427	3	1	112	1	0	0	0	0	1	0	0	0	5926	1159	40	1	177	1	FKTN	9	108363427	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10	11301255	108363427	32850004	36	7101											
ITIH5	80760	broad.mit.edu	37	10	7621991	7621991	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	G	7621991	G	G	7621991	3	3	112	1	0	0	0	0	1	0	0	0	7914	681	24	4	1830	4	ITIH5	10	7621991	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10		7621991	127912756	37	7102											
ANKRD26	22852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	27324608	27324608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	C	27324608	A	C	27324608	3	2	112	1	0	0	0	0	1	0	0	0	654	420	15	5	2405	5	ANKRD26	10	27324608	Missense_Mutation	SNP	A	TCGA-B0-4816-01A-01D-1501-10	19702617	27324608	108210139	38	7103											
ZNF33A	7581	hgsc.bcm.edu	37	10	38343924	38343924	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	-	38343924	C	-	38343924	7	5	112	1	0	1	0	1	0	0	0	0	17866	913	32	0	886	0	ZNF33A	10	38343924	Frame_Shift_Del	DEL	C	TCGA-B0-4816-01A-01D-1501-10	11019316	38343924	97190823	39	7104											
PANK1	53354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	91344174	91344174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	91344174	C	A	91344174	3	1	112	1	0	0	0	0	1	0	0	0	11423	826	29	4	14	4	PANK1	10	91344174	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	53000250	91344174	44190573	40	7105											
BTAF1	9044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	93784687	93784687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	G	93784687	A	G	93784687	3	3	112	1	0	0	0	0	1	0	0	0	1538	188	7	3	5176	3	BTAF1	10	93784687	Missense_Mutation	SNP	A	TCGA-B0-4816-01A-01D-1501-10	2440513	93784687	41750060	41	7106											
SEMA4G	57715	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	102738875	102738875	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	102738875	A	T	102738875	3	4	112	1	0	0	0	0	1	0	0	0	14049	72	3	5	860	5	SEMA4G	10	102738875	Missense_Mutation	SNP	A	TCGA-B0-4816-01A-01D-1501-10	8954188	102738875	32795872	42	7107											
OR51D1	390038	hgsc.bcm.edu;ucsc.edu	37	11	4661043	4661044	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	CC	4661044	-	CC	4661043	7	5	112	1	0	1	1	0	0	0	0	0	11100	1667	58	0	25	0	OR51D1	11	4661043	Frame_Shift_Ins	INS	-	TCGA-B0-4816-01A-01D-1501-10		4661043	130345473	43	7108											
DNHD1	144132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6592961	6592961	+	Silent	SNP	C	C	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	6592961	C	T	6592961	2	4	112	1	0	0	0	0	0	0	0	1	4670	668	24	2		2	DNHD1	11	6592961	Silent	SNP	C	TCGA-B0-4816-01A-01D-1501-10	1931918	6592961	128413555	44	7109											
NXF1	10482	broad.mit.edu;ucsc.edu	37	11	62569079	62569079	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	G	62569079	G	G	62569079	3	3	112	1	0	0	0	0	1	0	0	0	10789	594	21	4	1310	4	NXF1	11	62569079	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	55976118	62569079	72437437	45	7110											
CD163L1	283316	broad.mit.edu;ucsc.edu	37	12	7527159	7527159	+	Silent	SNP	C	T	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	7527159	T	T	7527159	2	4	112	1	0	0	0	0	0	0	0	1	2970	726	26	2		2	CD163L1	12	7527159	Silent	SNP	C	TCGA-B0-4816-01A-01D-1501-10		7527159	126324736	46	7111											
RIMBP2	23504	broad.mit.edu	37	12	130926698	130926698	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	130926698	A	A	130926698	3	1	112	1	0	0	0	0	1	0	0	0	13376	1145	40	1	2058	1	RIMBP2	12	130926698	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10	123399539	130926698	2925197	47	7112											
TECPR2	9895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	102906859	102906859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	102906859	G	A	102906859	3	1	112	1	0	0	0	0	1	0	0	0	15756	1059	37	1	2703	1	TECPR2	14	102906859	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10		102906859	4442681	48	7113											
PPIB	5479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	64448267	64448267	+	Silent	SNP	G	G	A	rs143287832		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	64448267	G	A	64448267	2	1	112	1	0	0	0	0	0	0	0	1	12329	1079	38	1		1	PPIB	15	64448267	Silent	SNP	G	TCGA-B0-4816-01A-01D-1501-10		64448267	38083125	49	7114	74	2									
PPIB	5479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	64448268	64448268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	64448268	C	T	64448268	3	4	112	1	0	0	0	0	1	0	0	0	12329	710	25	2	49	2	PPIB	15	64448268	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	1	64448268	38083124	50	7115	74	2									
ZZEF1	23140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3945845	3945845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	3945845	C	T	3945845	3	4	112	1	0	0	0	0	1	0	0	0	18267	565	20	2	2769	2	ZZEF1	17	3945845	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10		3945845	77249365	51	7116											
NEURL4	84461	hgsc.bcm.edu;ucsc.edu	37	17	7222420	7222420	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	-	7222420	T	-	7222420	7	5	112	1	0	1	0	1	0	0	0	0	10354	1722	60	0	1087	0	NEURL4	17	7222420	Frame_Shift_Del	DEL	T	TCGA-B0-4816-01A-01D-1501-10	3276575	7222420	73972790	52	7117											
MAP3K14	9020	hgsc.bcm.edu;ucsc.edu	37	17	43368049	43368049	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	-	43368049	T	-	43368049	7	5	112	1	0	1	0	1	0	0	0	0	9255	1722	60	0	2839	0	MAP3K14	17	43368049	Frame_Shift_Del	DEL	T	TCGA-B0-4816-01A-01D-1501-10	36145629	43368049	37827161	53	7118											
TMEM100	55273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	53798317	53798317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	G	53798317	C	G	53798317	3	3	112	1	0	0	0	0	1	0	0	0	16027	835	29	4	293	4	TMEM100	17	53798317	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10	10430268	53798317	27396893	54	7119											
ZNF57	126295	broad.mit.edu;hgsc.bcm.edu	37	19	2917940	2917940	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	T	2917940	A	T	2917940	3	4	112	1	0	0	0	0	1	0	0	0	18013	101	4	5	1335	5	ZNF57	19	2917940	Missense_Mutation	SNP	A	TCGA-B0-4816-01A-01D-1501-10		2917940	56211043	55	7120											
GMIP	51291	broad.mit.edu	37	19	19744707	19744708	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	19744708	A	A	19744707	7	5	112	1	0	1	1	0	0	0	0	0	6498	1232	43	0	547	0	GMIP	19	19744707	Frame_Shift_Ins	INS	-	TCGA-B0-4816-01A-01D-1501-10	16826767	19744707	39384276	56	7121											
ZNF829	374899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37382715	37382715	+	Silent	SNP	A	A	G	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	G	37382715	A	G	37382715	2	3	112	1	0	0	0	0	0	0	0	1	18194	389	14	3		3	ZNF829	19	37382715	Silent	SNP	A	TCGA-B0-4816-01A-01D-1501-10	17638008	37382715	21746268	57	7122											
LTBP4	8425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41105107	41105107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	41105107	G	A	41105107	3	1	112	1	0	0	0	0	1	0	0	0	9083	1319	46	2	177	2	LTBP4	19	41105107	Missense_Mutation	SNP	G	TCGA-B0-4816-01A-01D-1501-10	3722392	41105107	18023876	58	7123											
C20orf7	0	hgsc.bcm.edu	37	20	13769227	13769227	+	RNA	SNP	T	T	C	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	C	13769227	T	C	13769227	1	2	112	0	1	0	0	0	0	0	0	0	2117	1856	64	3		3	C20orf7	20	13769227	RNA	SNP	T	TCGA-B0-4816-01A-01D-1501-10		13769227	49256293	59	7124											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53239736	53239736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	A	53239736	C	A	53239736	3	1	112	1	0	0	0	0	1	0	0	0	8142	594	21	4	3234	4	KDM5C	23	53239736	Missense_Mutation	SNP	C	TCGA-B0-4816-01A-01D-1501-10		53239736	102030824	60	7125											
CYLC1	1538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	83128364	83128364	+	Silent	SNP	A	A	G	novel		TCGA-B0-4816-01A-01D-1501-10	TCGA-B0-4816-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa690c54-aeb4-4aa8-ae5a-5119cdfcf7cf	7a97955f-563e-41e5-b450-2af011108d71	G	83128364	A	G	83128364	2	3	112	1	0	0	0	0	0	0	0	1	4143	117	5	3		3	CYLC1	23	83128364	Silent	SNP	A	TCGA-B0-4816-01A-01D-1501-10	29888628	83128364	72142196	61	7126											
VHL	7428	hgsc.bcm.edu	37	3	10183755	10183755	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4816-01A-01W-1528-10	TCGA-B0-4816-11A-02W-1528-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	d5ee9c73-2794-4e3c-bcaa-9d6b3bd63024	076ea472-3ea0-410f-b24f-f2e5659e0b90	-	10183755	T	-	10183755	7	5	113	1	0	1	0	1	0	0	0	0	17174	1435	50	0	226	0	VHL	3	10183755	Frame_Shift_Del	DEL	T	TCGA-B0-4816-01A-01W-1528-10		10183755	187838675	1	7127											
ATAD3C	219293	hgsc.bcm.edu	37	1	1391244	1391244	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	1391244	G	C	1391244	3	2	114	1	0	0	0	0	1	0	0	0	1075	1000	35	4	534	4	ATAD3C	1	1391244	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10		1391244	247859377	1	7128											
ANKRD35	148741	hgsc.bcm.edu	37	1	145566760	145566760	+	Silent	SNP	T	T	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	145566760	T	C	145566760	2	2	114	1	0	0	0	0	0	0	0	1	664	1799	63	3		3	ANKRD35	1	145566760	Silent	SNP	T	TCGA-B0-4817-01A-01D-1361-10	144175516	145566760	103683861	2	7129											
FAM129A	116496	hgsc.bcm.edu	37	1	184859343	184859343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	184859343	C	A	184859343	3	1	114	1	0	0	0	0	1	0	0	0	5440	855	30	4	2498	4	FAM129A	1	184859343	Missense_Mutation	SNP	C	TCGA-B0-4817-01A-01D-1361-10	39292583	184859343	64391278	3	7130											
IRF2BP2	359948	hgsc.bcm.edu;ucsc.edu	37	1	234743339	234743339	+	Silent	SNP	C	C	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	234743339	C	A	234743339	2	1	114	1	0	0	0	0	0	0	0	1	7837	610	22	4		4	IRF2BP2	1	234743339	Silent	SNP	C	TCGA-B0-4817-01A-01D-1361-10	49883996	234743339	14507282	4	7131											
CDC42EP3	10602	hgsc.bcm.edu;ucsc.edu	37	2	37873389	37873389	+	Silent	SNP	T	T	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	37873389	T	A	37873389	2	1	114	1	0	0	0	0	0	0	0	1	3079	1422	50	5		5	CDC42EP3	2	37873389	Silent	SNP	T	TCGA-B0-4817-01A-01D-1361-10		37873389	205325984	5	7132											
SSFA2	6744	hgsc.bcm.edu	37	2	182765606	182765606	+	Silent	SNP	A	A	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	182765606	A	T	182765606	2	4	114	1	0	0	0	0	0	0	0	1	15195	407	15	5		5	SSFA2	2	182765606	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10	144892217	182765606	60433767	6	7133											
ALPI	248	hgsc.bcm.edu	37	2	233322958	233322958	+	Silent	SNP	T	T	C	rs41265121	bycluster;byfrequency;by1000genomes	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	233322958	T	C	233322958	2	2	114	1	0	0	0	0	0	0	0	1	543	1683	59	3		3	ALPI	2	233322958	Silent	SNP	T	TCGA-B0-4817-01A-01D-1361-10	50557352	233322958	9876415	7	7134											
ZNF619	285267	hgsc.bcm.edu	37	3	40528385	40528385	+	Silent	SNP	A	A	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	40528385	A	T	40528385	2	4	114	1	0	0	0	0	0	0	0	1	18055	262	10	5		5	ZNF619	3	40528385	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10		40528385	157494045	8	7135											
PTPN23	25930	hgsc.bcm.edu	37	3	47449932	47449932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	47449932	C	A	47449932	3	1	114	1	0	0	0	0	1	0	0	0	12801	913	32	4	1340	4	PTPN23	3	47449932	Missense_Mutation	SNP	C	TCGA-B0-4817-01A-01D-1361-10	6921547	47449932	150572498	9	7136											
DOCK3	1795	hgsc.bcm.edu	37	3	51400103	51400103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	51400103	G	A	51400103	3	1	114	1	0	0	0	0	1	0	0	0	4690	1058	37	1	5485	1	DOCK3	3	51400103	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10	3950171	51400103	146622327	10	7137											
XRN1	54464	hgsc.bcm.edu;ucsc.edu	37	3	142051287	142051287	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	142051287	T	A	142051287	3	1	114	1	0	0	0	0	1	0	0	0	17471	1838	64	5	999	5	XRN1	3	142051287	Missense_Mutation	SNP	T	TCGA-B0-4817-01A-01D-1361-10	90651184	142051287	55971143	11	7138											
ATP13A5	344905	hgsc.bcm.edu;ucsc.edu	37	3	193036861	193036861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	193036861	G	A	193036861	3	1	114	1	0	0	0	0	1	0	0	0	1127	1145	40	1	1758	1	ATP13A5	3	193036861	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10	50985574	193036861	4985569	12	7139											
JAKMIP1	152789	hgsc.bcm.edu	37	4	6087193	6087193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	6087193	T	C	6087193	3	2	114	1	0	0	0	0	1	0	0	0	7947	1551	54	3	1854	3	JAKMIP1	4	6087193	Missense_Mutation	SNP	T	TCGA-B0-4817-01A-01D-1361-10		6087193	185067083	13	7140											
SAP30	8819	hgsc.bcm.edu	37	4	174292632	174292632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	174292632	T	C	174292632	3	2	114	1	0	0	0	0	1	0	0	0	13846	1435	50	3	301	3	SAP30	4	174292632	Missense_Mutation	SNP	T	TCGA-B0-4817-01A-01D-1361-10	168205439	174292632	16861644	14	7141											
MGC42105	0	hgsc.bcm.edu	37	5	43280310	43280310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	43280310	A	G	43280310	3	3	114	1	0	0	0	0	1	0	0	0	9559	217	8	3	800	3	MGC42105	5	43280310	Missense_Mutation	SNP	A	TCGA-B0-4817-01A-01D-1361-10		43280310	137634950	15	7142											
PWWP2A	114825	hgsc.bcm.edu	37	5	159520688	159520688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	159520688	A	T	159520688	3	4	114	1	0	0	0	0	1	0	0	0	12858	446	16	5	1444	5	PWWP2A	5	159520688	Missense_Mutation	SNP	A	TCGA-B0-4817-01A-01D-1361-10	116240378	159520688	21394572	16	7143											
MOCS1	4337	hgsc.bcm.edu	37	6	39893450	39893450	+	Silent	SNP	A	A	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	39893450	A	T	39893450	2	4	114	1	0	0	0	0	0	0	0	1	9697	349	13	5		5	MOCS1	6	39893450	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10		39893450	131221617	17	7144											
RIMS1	22999	hgsc.bcm.edu	37	6	73000565	73000565	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	73000565	G	A	73000565	5	1	114	1	0	0	0	0	0	0	1	0	13380	1275	44	2	3999	2	RIMS1	6	73000565	Splice_Site	SNP	G	TCGA-B0-4817-01A-01D-1361-10	33107115	73000565	98114502	18	7145											
SFRS18	0	hgsc.bcm.edu	37	6	99848473	99848473	+	Silent	SNP	A	A	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	99848473	A	T	99848473	2	4	114	1	0	0	0	0	0	0	0	1	14187	291	11	5		5	SFRS18	6	99848473	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10	26847908	99848473	71266594	19	7146											
NKAIN2	154215	hgsc.bcm.edu;ucsc.edu	37	6	124979433	124979433	+	Silent	SNP	C	C	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	124979433	C	T	124979433	2	4	114	1	0	0	0	0	0	0	0	1	10443	564	20	2		2	NKAIN2	6	124979433	Silent	SNP	C	TCGA-B0-4817-01A-01D-1361-10	25130960	124979433	46135634	20	7147											
FKBP9	11328	hgsc.bcm.edu	37	7	33039811	33039811	+	Silent	SNP	C	C	T	rs79110989		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	33039811	C	T	33039811	2	4	114	1	0	0	0	0	0	0	0	1	5922	776	27	1		1	FKBP9	7	33039811	Silent	SNP	C	TCGA-B0-4817-01A-01D-1361-10		33039811	126098852	21	7148											
GTF2I	2969	hgsc.bcm.edu;ucsc.edu	37	7	74129238	74129238	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	74129238	T	C	74129238	5	2	114	1	0	0	0	0	0	0	1	0	6874	1652	57	3	859	3	GTF2I	7	74129238	Splice_Site	SNP	T	TCGA-B0-4817-01A-01D-1361-10	41089427	74129238	85009425	22	7149											
C7orf58	0	hgsc.bcm.edu;ucsc.edu	37	7	120907350	120907350	+	Silent	SNP	A	A	G	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	120907350	A	G	120907350	2	3	114	1	0	0	0	0	0	0	0	1	2407	359	13	3		3	C7orf58	7	120907350	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10	46778112	120907350	38231313	23	7150											
EZH2	2146	hgsc.bcm.edu;ucsc.edu	37	7	148506483	148506483	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	148506483	C	T	148506483	5	4	114	1	0	0	0	0	0	0	1	0	5336	927	32	2	238	2	EZH2	7	148506483	Splice_Site	SNP	C	TCGA-B0-4817-01A-01D-1361-10	27599133	148506483	10632180	24	7151											
SSPO	23145	hgsc.bcm.edu	37	7	149516805	149516805	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	149516805	G	A	149516805	5	1	114	1	0	0	0	0	0	0	1	0	15201	1043	36	2	12339	2	SSPO	7	149516805	Splice_Site	SNP	G	TCGA-B0-4817-01A-01D-1361-10	1010322	149516805	9621858	25	7152											
ACTR3B	57180	hgsc.bcm.edu	37	7	152522195	152522195	+	Silent	SNP	C	C	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	152522195	C	T	152522195	2	4	114	1	0	0	0	0	0	0	0	1	213	726	26	2		2	ACTR3B	7	152522195	Silent	SNP	C	TCGA-B0-4817-01A-01D-1361-10	3005390	152522195	6616468	26	7153											
ESYT2	57488	hgsc.bcm.edu	37	7	158529819	158529819	+	Silent	SNP	A	A	G	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	158529819	A	G	158529819	2	3	114	1	0	0	0	0	0	0	0	1	5267	108	4	3		3	ESYT2	7	158529819	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10	6007624	158529819	608844	27	7154											
NRG1	3084	hgsc.bcm.edu	37	8	32621790	32621790	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	32621790	G	C	32621790	3	2	114	1	0	0	0	0	1	0	0	0	10654	1029	36	4	3564	4	NRG1	8	32621790	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10		32621790	113742232	28	7155											
C9orf82	0	hgsc.bcm.edu;ucsc.edu	37	9	26861129	26861129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	26861129	A	C	26861129	3	2	114	1	0	0	0	0	1	0	0	0	2501	333	12	5	419	5	C9orf82	9	26861129	Missense_Mutation	SNP	A	TCGA-B0-4817-01A-01D-1361-10		26861129	114352302	29	7156											
CH25H	9023	hgsc.bcm.edu;ucsc.edu	37	10	90966472	90966472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	90966472	A	T	90966472	3	4	114	1	0	0	0	0	1	0	0	0	3309	304	11	5	244	5	CH25H	10	90966472	Missense_Mutation	SNP	A	TCGA-B0-4817-01A-01D-1361-10		90966472	44568275	30	7157											
OR10A3	26496	hgsc.bcm.edu;ucsc.edu	37	11	7960851	7960851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	7960851	A	C	7960851	3	2	114	1	0	0	0	0	1	0	0	0	10898	14	1	5	730	5	OR10A3	11	7960851	Missense_Mutation	SNP	A	TCGA-B0-4817-01A-01D-1361-10		7960851	127045665	31	7158											
LRP4	4038	hgsc.bcm.edu	37	11	46914588	46914588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	46914588	G	A	46914588	3	1	114	1	0	0	0	0	1	0	0	0	8966	1115	39	1	4188	1	LRP4	11	46914588	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10	38953737	46914588	88091928	32	7159											
SIAE	54414	hgsc.bcm.edu;ucsc.edu	37	11	124509622	124509622	+	Missense_Mutation	SNP	C	C	A	rs146397917	alternate_allele	TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	124509622	C	A	124509622	3	1	114	1	0	0	0	0	1	0	0	0	14311	913	32	4	475	4	SIAE	11	124509622	Missense_Mutation	SNP	C	TCGA-B0-4817-01A-01D-1361-10	77595034	124509622	10496894	33	7160											
PAN2	9924	hgsc.bcm.edu	37	12	56720445	56720445	+	Silent	SNP	T	T	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	56720445	T	C	56720445	2	2	114	1	0	0	0	0	0	0	0	1	11421	1683	59	3		3	PAN2	12	56720445	Silent	SNP	T	TCGA-B0-4817-01A-01D-1361-10		56720445	77131450	34	7161											
NXPH4	11247	hgsc.bcm.edu	37	12	57619000	57619000	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	57619000	A	T	57619000	3	4	114	1	0	0	0	0	1	0	0	0	10800	246	9	5	403	5	NXPH4	12	57619000	Missense_Mutation	SNP	A	TCGA-B0-4817-01A-01D-1361-10	898555	57619000	76232895	35	7162											
SHMT2	6472	hgsc.bcm.edu;ucsc.edu	37	12	57625269	57625269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	57625269	C	A	57625269	3	1	114	1	0	0	0	0	1	0	0	0	14299	912	32	4	247	4	SHMT2	12	57625269	Missense_Mutation	SNP	C	TCGA-B0-4817-01A-01D-1361-10	6269	57625269	76226626	36	7163											
PRDM4	11108	hgsc.bcm.edu	37	12	108147767	108147767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	108147767	T	G	108147767	3	3	114	1	0	0	0	0	1	0	0	0	12469	1841	64	5	2176	5	PRDM4	12	108147767	Missense_Mutation	SNP	T	TCGA-B0-4817-01A-01D-1361-10	50522498	108147767	25704128	37	7164											
KCTD10	83892	hgsc.bcm.edu	37	12	109907503	109907503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	109907503	A	T	109907503	3	4	114	1	0	0	0	0	1	0	0	0	8104	304	11	5	931	5	KCTD10	12	109907503	Missense_Mutation	SNP	A	TCGA-B0-4817-01A-01D-1361-10	1759736	109907503	23944392	38	7165											
ZFYVE26	23503	hgsc.bcm.edu	37	14	68251809	68251809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	68251809	C	A	68251809	3	1	114	1	0	0	0	0	1	0	0	0	17680	710	25	4	4225	4	ZFYVE26	14	68251809	Missense_Mutation	SNP	C	TCGA-B0-4817-01A-01D-1361-10		68251809	39097731	39	7166											
PLA2G4B	100137049	hgsc.bcm.edu;ucsc.edu	37	15	42133008	42133008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	42133008	G	A	42133008	3	1	114	1	0	0	0	0	1	0	0	0	12009	1261	44	2	270	2	PLA2G4B	15	42133008	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10		42133008	60398384	40	7167											
DUOX1	53905	hgsc.bcm.edu	37	15	45440634	45440634	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	45440634	T	A	45440634	3	1	114	1	0	0	0	0	1	0	0	0	4802	1551	54	5	2885	5	DUOX1	15	45440634	Missense_Mutation	SNP	T	TCGA-B0-4817-01A-01D-1361-10	3307626	45440634	57090758	41	7168											
SCG3	29106	hgsc.bcm.edu	37	15	51975597	51975597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	51975597	C	A	51975597	3	1	114	1	0	0	0	0	1	0	0	0	13905	564	20	4	377	4	SCG3	15	51975597	Missense_Mutation	SNP	C	TCGA-B0-4817-01A-01D-1361-10	6534963	51975597	50555795	42	7169											
LRRK1	79705	hgsc.bcm.edu	37	15	101593136	101593136	+	Silent	SNP	G	G	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	101593136	G	T	101593136	2	4	114	1	0	0	0	0	0	0	0	1	9039	1335	47	4		4	LRRK1	15	101593136	Silent	SNP	G	TCGA-B0-4817-01A-01D-1361-10	49617539	101593136	938256	43	7170											
NOMO2	283820	hgsc.bcm.edu	37	16	18528574	18528574	+	Silent	SNP	A	A	G	rs1062415		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	18528574	A	G	18528574	2	3	114	1	0	0	0	0	0	0	0	1	10539	156	6	3		3	NOMO2	16	18528574	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10		18528574	71826179	44	7171											
PPP4C	5531	hgsc.bcm.edu	37	16	30096007	30096007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	30096007	A	G	30096007	3	3	114	1	0	0	0	0	1	0	0	0	12412	304	11	3	651	3	PPP4C	16	30096007	Missense_Mutation	SNP	A	TCGA-B0-4817-01A-01D-1361-10	11567433	30096007	60258746	45	7172											
DEF8	54849	hgsc.bcm.edu	37	16	90025607	90025607	+	Silent	SNP	A	A	G	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	90025607	A	G	90025607	2	3	114	1	0	0	0	0	0	0	0	1	4389	11	1	3		3	DEF8	16	90025607	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10	59929600	90025607	329146	46	7173											
STAT5B	6777	hgsc.bcm.edu	37	17	40375493	40375493	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	C	40375493	G	C	40375493	3	2	114	1	0	0	0	0	1	0	0	0	15281	1020	36	4	1966	4	STAT5B	17	40375493	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10		40375493	40819717	47	7174											
RGS9	8787	hgsc.bcm.edu	37	17	63221255	63221255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	63221255	C	T	63221255	3	4	114	1	0	0	0	0	1	0	0	0	13326	643	23	1	1668	1	RGS9	17	63221255	Missense_Mutation	SNP	C	TCGA-B0-4817-01A-01D-1361-10	22845762	63221255	17973955	48	7175											
SMARCA4	6597	hgsc.bcm.edu	37	19	11144113	11144113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	11144113	G	T	11144113	3	4	114	1	0	0	0	0	1	0	0	0	14783	1116	39	4	3792	4	SMARCA4	19	11144113	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10		11144113	47984870	49	7176											
UBA2	10054	hgsc.bcm.edu	37	19	34935995	34935995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	34935995	C	A	34935995	3	1	114	1	0	0	0	0	1	0	0	0	16840	565	20	4	770	4	UBA2	19	34935995	Missense_Mutation	SNP	C	TCGA-B0-4817-01A-01D-1361-10	23791882	34935995	24192988	50	7177											
ATP4A	495	hgsc.bcm.edu	37	19	36049926	36049927	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	-	36049927	GA	-	36049926	7	5	114	1	0	1	0	1	0	0	0	0	1145	1164	41	0	1943	0	ATP4A	19	36049926	Frame_Shift_Del	DEL	GA	TCGA-B0-4817-01A-01D-1361-10	1113931	36049926	23079057	51	7178											
ZNF780B	163131	hgsc.bcm.edu;ucsc.edu	37	19	40540306	40540306	+	Silent	SNP	G	G	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	40540306	G	A	40540306	2	1	114	1	0	0	0	0	0	0	0	1	18165	1280	45	2		2	ZNF780B	19	40540306	Silent	SNP	G	TCGA-B0-4817-01A-01D-1361-10	4490380	40540306	18588677	52	7179											
ZNF329	79673	hgsc.bcm.edu;ucsc.edu	37	19	58639319	58639319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	58639319	T	G	58639319	3	3	114	1	0	0	0	0	1	0	0	0	17859	1850	64	5	77	5	ZNF329	19	58639319	Missense_Mutation	SNP	T	TCGA-B0-4817-01A-01D-1361-10	18099013	58639319	489664	53	7180											
PCIF1	63935	hgsc.bcm.edu	37	20	44572023	44572023	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	44572023	T	A	44572023	3	1	114	1	0	0	0	0	1	0	0	0	11587	1841	64	5	892	5	PCIF1	20	44572023	Missense_Mutation	SNP	T	TCGA-B0-4817-01A-01D-1361-10		44572023	18453497	54	7181											
WDR13	64743	hgsc.bcm.edu	37	X	48458031	48458031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	48458031	G	T	48458031	3	4	114	1	0	0	0	0	1	0	0	0	17287	1232	43	4	463	4	WDR13	23	48458031	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10		48458031	106812529	55	7182											
RLIM	51132	hgsc.bcm.edu	37	X	73811648	73811648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	73811648	G	A	73811648	3	1	114	1	0	0	0	0	1	0	0	0	13403	1294	45	2	376	2	RLIM	23	73811648	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10	25353617	73811648	81458912	56	7183											
APOOL	139322	hgsc.bcm.edu;ucsc.edu	37	X	84310894	84310894	+	Silent	SNP	A	A	G	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	84310894	A	G	84310894	2	3	114	1	0	0	0	0	0	0	0	1	814	175	7	3		3	APOOL	23	84310894	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10	10499246	84310894	70959666	57	7184											
TCEAL3	85012	hgsc.bcm.edu;ucsc.edu	37	X	102864442	102864442	+	Silent	SNP	A	A	G	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	G	102864442	A	G	102864442	2	3	114	1	0	0	0	0	0	0	0	1	15684	69	3	3		3	TCEAL3	23	102864442	Silent	SNP	A	TCGA-B0-4817-01A-01D-1361-10	18553548	102864442	52406118	58	7185											
DOCK11	139818	hgsc.bcm.edu	37	X	117707902	117707902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	T	117707902	G	T	117707902	3	4	114	1	0	0	0	0	1	0	0	0	4688	1029	36	4	1356	4	DOCK11	23	117707902	Missense_Mutation	SNP	G	TCGA-B0-4817-01A-01D-1361-10	14843460	117707902	37562658	59	7186											
ACTRT1	139741	hgsc.bcm.edu	37	X	127185630	127185630	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	A	127185630	T	A	127185630	3	1	114	1	0	0	0	0	1	0	0	0	218	1550	54	5	578	5	ACTRT1	23	127185630	Missense_Mutation	SNP	T	TCGA-B0-4817-01A-01D-1361-10	9477728	127185630	28084930	60	7187											
GPR50	9248	hgsc.bcm.edu	37	X	150349562	150349562	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4817-01A-01D-1361-10	TCGA-B0-4817-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	304941d8-b999-4192-91d7-517f468c4156	27a4c2a2-b90f-4046-b6ca-373e91ba70f3	-	150349562	A	-	150349562	7	5	114	1	0	1	0	1	0	0	0	0	6704	159	6	0	1513	0	GPR50	23	150349562	Frame_Shift_Del	DEL	A	TCGA-B0-4817-01A-01D-1361-10	23163932	150349562	4920998	61	7188											
CASZ1	54897	broad.mit.edu	37	1	10699617	10699618	+	Frame_Shift_Ins	INS	-	AA	AA	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	AA	10699618	AA	AA	10699617	7	5	115	1	0	1	1	0	0	0	0	0	2687	1078	38	0	621	0	CASZ1	1	10699617	Frame_Shift_Ins	INS	-	TCGA-B0-4818-01A-01D-1501-10		10699617	238551004	1	7189											
CCBL2	56267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	89454019	89454019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	89454019	C	A	89454019	3	1	115	1	0	0	0	0	1	0	0	0	2735	912	32	4	1401	4	CCBL2	1	89454019	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	78754402	89454019	159796602	2	7190											
SORT1	6272	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109884661	109884661	+	Silent	SNP	T	T	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	109884661	T	C	109884661	2	2	115	1	0	0	0	0	0	0	0	1	14948	1393	49	3		3	SORT1	1	109884661	Silent	SNP	T	TCGA-B0-4818-01A-01D-1501-10	20430642	109884661	139365960	3	7191											
HAO2	51179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	119923771	119923771	+	Silent	SNP	T	T	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	119923771	T	C	119923771	2	2	115	1	0	0	0	0	0	0	0	1	6959	1538	54	3		3	HAO2	1	119923771	Silent	SNP	T	TCGA-B0-4818-01A-01D-1501-10	10039110	119923771	129326850	4	7192											
NOS1AP	9722	broad.mit.edu	37	1	162040040	162040040	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	162040040	A	A	162040040	3	1	115	1	0	0	0	0	1	0	0	0	10549	1087	38	1	75	1	NOS1AP	1	162040040	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	42116269	162040040	87210581	5	7193											
FMO2	2327	hgsc.bcm.edu;ucsc.edu	37	1	171174636	171174637	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	171174637	-	A	171174636	7	5	115	1	0	1	1	0	0	0	0	0	5962	1464	51	0	1068	0	FMO2	1	171174636	Frame_Shift_Ins	INS	-	TCGA-B0-4818-01A-01D-1501-10	9134596	171174636	78075985	6	7194											
HMCN1	83872	hgsc.bcm.edu;ucsc.edu	37	1	186114885	186114885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	186114885	T	C	186114885	3	2	115	1	0	0	0	0	1	0	0	0	7227	1710	59	3	14808	3	HMCN1	1	186114885	Missense_Mutation	SNP	T	TCGA-B0-4818-01A-01D-1501-10	14940249	186114885	63135736	7	7195											
RYR2	6262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	237947723	237947723	+	Silent	SNP	C	C	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	237947723	C	T	237947723	2	4	115	1	0	0	0	0	0	0	0	1	13782	581	21	2		2	RYR2	1	237947723	Silent	SNP	C	TCGA-B0-4818-01A-01D-1501-10	51832838	237947723	11302898	8	7196											
CEP68	23177	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	65298597	65298597	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	65298597	A	T	65298597	3	4	115	1	0	0	0	0	1	0	0	0	3260	275	10	5	373	5	CEP68	2	65298597	Missense_Mutation	SNP	A	TCGA-B0-4818-01A-01D-1501-10		65298597	177900776	9	7197											
EXOC6B	23233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	72411218	72411218	+	Silent	SNP	C	C	G	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	G	72411218	C	G	72411218	2	3	115	1	0	0	0	0	0	0	0	1	5311	813	29	4		4	EXOC6B	2	72411218	Silent	SNP	C	TCGA-B0-4818-01A-01D-1501-10	7112621	72411218	170788155	10	7198											
TBC1D8	11138	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	101624288	101624288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	101624288	A	T	101624288	3	4	115	1	0	0	0	0	1	0	0	0	15637	69	3	5	8	5	TBC1D8	2	101624288	Missense_Mutation	SNP	A	TCGA-B0-4818-01A-01D-1501-10	29213070	101624288	141575085	11	7199											
R3HDM1	23518	broad.mit.edu;hgsc.bcm.edu	37	2	136418887	136418887	+	Silent	SNP	T	T	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	136418887	T	A	136418887	2	1	115	1	0	0	0	0	0	0	0	1	12900	1538	54	5		5	R3HDM1	2	136418887	Silent	SNP	T	TCGA-B0-4818-01A-01D-1501-10	34794599	136418887	106780486	12	7200	75	2									
R3HDM1	23518	broad.mit.edu;hgsc.bcm.edu	37	2	136418888	136418888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	136418888	C	A	136418888	3	1	115	1	0	0	0	0	1	0	0	0	12900	827	29	4	2034	4	R3HDM1	2	136418888	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	1	136418888	106780485	13	7201	75	2									
ITGA6	3655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	173354378	173354378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	G	173354378	A	G	173354378	3	3	115	1	0	0	0	0	1	0	0	0	7887	246	9	3	2749	3	ITGA6	2	173354378	Missense_Mutation	SNP	A	TCGA-B0-4818-01A-01D-1501-10	36935490	173354378	69844995	14	7202											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179438104	179438111	+	Frame_Shift_Del	DEL	CTTCCACC	CTTCCACC	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	CTTCCACC	CTTCCACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	179438111	CTTCCACC	-	179438104	7	5	115	1	0	1	0	1	0	0	0	0	16747	565	20	0	35372	0	TTN	2	179438104	Frame_Shift_Del	DEL	CTTCCACC	TCGA-B0-4818-01A-01D-1501-10	6083726	179438104	63761269	15	7203											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179472591	179472591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	179472591	T	-	179472591	7	5	115	1	0	1	0	1	0	0	0	0	16747	1722	60	0	55118	0	TTN	2	179472591	Frame_Shift_Del	DEL	T	TCGA-B0-4818-01A-01D-1501-10	34487	179472591	63726782	16	7204											
NEUROD1	4760	hgsc.bcm.edu	37	2	182542656	182542657	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	182542657	-	C	182542656	7	5	115	1	0	1	1	0	0	0	0	0	10355	1203	42	0	142	0	NEUROD1	2	182542656	Frame_Shift_Ins	INS	-	TCGA-B0-4818-01A-01D-1501-10	3070065	182542656	60656717	17	7205											
ABCB6	10058	broad.mit.edu;ucsc.edu	37	2	220075789	220075789	+	Silent	SNP	G	C	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	220075789	C	C	220075789	2	2	115	1	0	0	0	0	0	0	0	1	45	1219	43	4		4	ABCB6	2	220075789	Silent	SNP	G	TCGA-B0-4818-01A-01D-1501-10	37533133	220075789	23123584	18	7206											
OBSL1	23363	broad.mit.edu	37	2	220435111	220435111	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	220435111	-	-	220435111	7	5	115	1	0	1	0	1	0	0	0	0	10820	864	30	0	5082	0	OBSL1	2	220435111	Frame_Shift_Del	DEL	C	TCGA-B0-4818-01A-01D-1501-10	359322	220435111	22764262	19	7207											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191645	10191646	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	10191646	-	T	10191645	7	5	115	1	0	1	1	0	0	0	0	0	17174	333	12	0	648	0	VHL	3	10191645	Frame_Shift_Ins	INS	-	TCGA-B0-4818-01A-01D-1501-10		10191645	187830785	20	7208											
PBRM1	55193	broad.mit.edu;ucsc.edu	37	3	52637738	52637738	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	52637738	T	T	52637738	3	4	115	1	0	0	0	0	1	0	0	0	11498	922	32	2	2378	2	PBRM1	3	52637738	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	42446093	52637738	145384692	21	7209	76	2									
PBRM1	55193	broad.mit.edu;ucsc.edu	37	3	52637740	52637740	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	52637740	T	T	52637740	4	4	115	1	0	0	0	0	0	1	0	0	11498	1294	45	4	2380	4	PBRM1	3	52637740	Nonsense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	2	52637740	145384690	22	7210	76	2									
GPR128	84873	broad.mit.edu;ucsc.edu	37	3	100356181	100356181	+	Silent	SNP	C	T	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	100356181	T	T	100356181	2	4	115	1	0	0	0	0	0	0	0	1	6648	842	30	2		2	GPR128	3	100356181	Silent	SNP	C	TCGA-B0-4818-01A-01D-1501-10	47718441	100356181	97666249	23	7211											
PTPLB	201562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	123301066	123301066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	G	123301066	A	G	123301066	3	3	115	1	0	0	0	0	1	0	0	0	12788	372	13	3	522	3	PTPLB	3	123301066	Missense_Mutation	SNP	A	TCGA-B0-4818-01A-01D-1501-10	22944885	123301066	74721364	24	7212											
BFSP2	8419	broad.mit.edu	37	3	133119014	133119014	+	Silent	SNP	G	A	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	133119014	A	A	133119014	2	1	115	1	0	0	0	0	0	0	0	1	1416	1190	42	2		2	BFSP2	3	133119014	Silent	SNP	G	TCGA-B0-4818-01A-01D-1501-10	9817948	133119014	64903416	25	7213											
EHHADH	1962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184947235	184947235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	184947235	C	T	184947235	3	4	115	1	0	0	0	0	1	0	0	0	4984	826	29	2	1739	2	EHHADH	3	184947235	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	51828221	184947235	13075195	26	7214											
LPP	4026	broad.mit.edu;hgsc.bcm.edu	37	3	188426055	188426055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	188426055	G	T	188426055	3	4	115	1	0	0	0	0	1	0	0	0	8930	1246	43	4	1132	4	LPP	3	188426055	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	3478820	188426055	9596375	27	7215											
PIGG	54872	broad.mit.edu;ucsc.edu	37	4	520921	520921	+	Silent	SNP	G	A	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	520921	A	A	520921	2	1	115	1	0	0	0	0	0	0	0	1	11895	991	35	2		2	PIGG	4	520921	Silent	SNP	G	TCGA-B0-4818-01A-01D-1501-10		520921	190633355	28	7216											
SEPT11	55752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77949832	77949832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	G	77949832	A	G	77949832	3	3	115	1	0	0	0	0	1	0	0	0	14074	188	7	3	1034	3	SEPT11	4	77949832	Missense_Mutation	SNP	A	TCGA-B0-4818-01A-01D-1501-10	77428911	77949832	113204444	29	7217											
C5orf23	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32789575	32789575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	32789575	G	T	32789575	3	4	115	1	0	0	0	0	1	0	0	0	2288	1000	35	4	70	4	C5orf23	5	32789575	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10		32789575	148125685	30	7218											
SNCAIP	9627	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	121759046	121759046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	121759046	C	T	121759046	3	4	115	1	0	0	0	0	1	0	0	0	14854	710	25	2	624	2	SNCAIP	5	121759046	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	88969471	121759046	59156214	31	7219											
SOX30	11063	broad.mit.edu;hgsc.bcm.edu	37	5	157078237	157078237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	157078237	T	C	157078237	3	2	115	1	0	0	0	0	1	0	0	0	14965	1435	50	3	1431	3	SOX30	5	157078237	Missense_Mutation	SNP	T	TCGA-B0-4818-01A-01D-1501-10	35319191	157078237	23837023	32	7220											
HIST1H1C	3006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	26056217	26056217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	26056217	G	A	26056217	3	1	115	1	0	0	0	0	1	0	0	0	7131	1116	39	1	205	1	HIST1H1C	6	26056217	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10		26056217	145058850	33	7221											
VEGFA	7422	broad.mit.edu	37	6	43742101	43742101	+	Silent	SNP	A	G	G	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	G	43742101	G	G	43742101	2	3	115	1	0	0	0	0	0	0	0	1	17162	175	7	3		3	VEGFA	6	43742101	Silent	SNP	A	TCGA-B0-4818-01A-01D-1501-10	17685884	43742101	127372966	34	7222											
C6orf97	0	hgsc.bcm.edu	37	6	151936781	151936781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	151936781	A	C	151936781	3	2	115	1	0	0	0	0	1	0	0	0	2376	98	4	5	1952	5	C6orf97	6	151936781	Missense_Mutation	SNP	A	TCGA-B0-4818-01A-01D-1501-10	108194680	151936781	19178286	35	7223											
BZW2	28969	broad.mit.edu;ucsc.edu	37	7	16720980	16720980	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	16720980	A	A	16720980	3	1	115	1	0	0	0	0	1	0	0	0	1581	1377	48	2	300	2	BZW2	7	16720980	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10		16720980	142417683	36	7224											
MFHAS1	9258	broad.mit.edu	37	8	8749266	8749266	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	8749266	-	-	8749266	7	5	115	1	0	1	0	1	0	0	0	0	9528	864	30	0	1867	0	MFHAS1	8	8749266	Frame_Shift_Del	DEL	C	TCGA-B0-4818-01A-01D-1501-10		8749266	137614756	37	7225											
PTDSS1	9791	broad.mit.edu;ucsc.edu	37	8	97316399	97316399	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	97316399	A	A	97316399	3	1	115	1	0	0	0	0	1	0	0	0	12746	1435	50	5	910	5	PTDSS1	8	97316399	Missense_Mutation	SNP	T	TCGA-B0-4818-01A-01D-1501-10	88567133	97316399	49047623	38	7226											
MPDZ	8777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	13224388	13224388	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	13224388	G	C	13224388	3	2	115	1	0	0	0	0	1	0	0	0	9729	1280	45	4	5919	4	MPDZ	9	13224388	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10		13224388	127989043	39	7227											
TOPORS	10210	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32543675	32543675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	32543675	G	A	32543675	3	1	115	1	0	0	0	0	1	0	0	0	16382	971	34	2	2293	2	TOPORS	9	32543675	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	19319287	32543675	108669756	40	7228											
C9orf64	84267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	86571091	86571091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	G	86571091	C	G	86571091	3	3	115	1	0	0	0	0	1	0	0	0	2491	797	28	4	716	4	C9orf64	9	86571091	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	54027416	86571091	54642340	41	7229											
TDRD7	23424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	100234634	100234634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	100234634	G	C	100234634	3	2	115	1	0	0	0	0	1	0	0	0	15747	1349	47	4	1835	4	TDRD7	9	100234634	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	13663543	100234634	40978797	42	7230	77	2									
TDRD7	23424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	100234635	100234635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	100234635	G	T	100234635	3	4	115	1	0	0	0	0	1	0	0	0	15747	1174	41	4	1836	4	TDRD7	9	100234635	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	1	100234635	40978796	43	7231	77	2									
TNC	3371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	117840320	117840320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	117840320	G	T	117840320	3	4	115	1	0	0	0	0	1	0	0	0	16282	1174	41	4	4117	4	TNC	9	117840320	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	17605685	117840320	23373111	44	7232											
AGAP7	653268	broad.mit.edu;hgsc.bcm.edu	37	10	51464817	51464817	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	51464817	T	A	51464817	4	1	115	1	0	0	0	0	0	1	0	0	373	1821	63	5	356	5	AGAP7	10	51464817	Nonsense_Mutation	SNP	T	TCGA-B0-4818-01A-01D-1501-10		51464817	84069930	45	7233											
SLC16A9	220963	hgsc.bcm.edu	37	10	61412636	61412653	+	In_Frame_Del	DEL	CCTCCCAGCAGGACGCAG	CCTCCCAGCAGGACGCAG	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	CCTCCCAGCAGGACGCAG	CCTCCCAGCAGGACGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	61412653	CCTCCCAGCAGGACGCAG	-	61412636	7	5	115	1	0	1	0	1	0	0	0	0	14428	507	18	0	109	0	SLC16A9	10	61412636	In_Frame_Del	DEL	CCTCCCAGCAGGACGCAG	TCGA-B0-4818-01A-01D-1501-10	9947819	61412636	74122111	46	7234											
C10orf118	55088	hgsc.bcm.edu;ucsc.edu	37	10	115894782	115894782	+	Silent	SNP	T	T	A	rs112902585	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	115894782	T	A	115894782	2	1	115	1	0	0	0	0	0	0	0	1	1589	1567	55	5		5	C10orf118	10	115894782	Silent	SNP	T	TCGA-B0-4818-01A-01D-1501-10	54482146	115894782	19639965	47	7235											
NUP98	4928	broad.mit.edu;ucsc.edu	37	11	3700799	3700799	+	Silent	SNP	G	A	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	3700799	A	A	3700799	2	1	115	1	0	0	0	0	0	0	0	1	10780	1161	41	2		2	NUP98	11	3700799	Silent	SNP	G	TCGA-B0-4818-01A-01D-1501-10		3700799	131305717	48	7236											
TCP11L1	55346	hgsc.bcm.edu;ucsc.edu	37	11	33065367	33065367	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	33065367	A	-	33065367	7	5	115	1	0	1	0	1	0	0	0	0	15726	117	5	0	50	0	TCP11L1	11	33065367	Frame_Shift_Del	DEL	A	TCGA-B0-4818-01A-01D-1501-10	29364568	33065367	101941149	49	7237											
OR4C12	283093	broad.mit.edu;hgsc.bcm.edu	37	11	50003804	50003804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	50003804	C	A	50003804	3	1	115	1	0	0	0	0	1	0	0	0	11053	564	20	4	699	4	OR4C12	11	50003804	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	16938437	50003804	85002712	50	7238											
PLEKHA5	54477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	19514587	19514587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	19514587	A	T	19514587	3	4	115	1	0	0	0	0	1	0	0	0	12066	11	1	5	3465	5	PLEKHA5	12	19514587	Missense_Mutation	SNP	A	TCGA-B0-4818-01A-01D-1501-10		19514587	114337308	51	7239											
CCDC65	85478	hgsc.bcm.edu;ucsc.edu	37	12	49312242	49312242	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	49312242	T	-	49312242	7	5	115	1	0	1	0	1	0	0	0	0	2839	1406	49	0	812	0	CCDC65	12	49312242	Frame_Shift_Del	DEL	T	TCGA-B0-4818-01A-01D-1501-10	29797655	49312242	84539653	52	7240											
CRYL1	51084	broad.mit.edu;ucsc.edu	37	13	21063530	21063530	+	Silent	SNP	T	C	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	21063530	C	C	21063530	2	2	115	1	0	0	0	0	0	0	0	1	3922	1509	53	3		3	CRYL1	13	21063530	Silent	SNP	T	TCGA-B0-4818-01A-01D-1501-10		21063530	94106348	53	7241											
C13orf18	0	broad.mit.edu;ucsc.edu	37	13	46919715	46919715	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	46919715	C	C	46919715	3	2	115	1	0	0	0	0	1	0	0	0	1722	1580	55	3	348	3	C13orf18	13	46919715	Missense_Mutation	SNP	T	TCGA-B0-4818-01A-01D-1501-10	25856185	46919715	68250163	54	7242											
FAM179B	23116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	45433557	45433557	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	45433557	T	A	45433557	3	1	115	1	0	0	0	0	1	0	0	0	5510	1580	55	5	1935	5	FAM179B	14	45433557	Missense_Mutation	SNP	T	TCGA-B0-4818-01A-01D-1501-10		45433557	61915983	55	7243											
HERC2	8924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	28436294	28436294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	28436294	C	A	28436294	3	1	115	1	0	0	0	0	1	0	0	0	7065	478	17	4	6116	4	HERC2	15	28436294	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10		28436294	74095098	56	7244											
UBR1	197131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43360146	43360146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	43360146	C	T	43360146	3	4	115	1	0	0	0	0	1	0	0	0	16913	826	29	2	4669	2	UBR1	15	43360146	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	14923852	43360146	59171246	57	7245											
CELF6	60677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	72579669	72579669	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	72579669	T	A	72579669	3	1	115	1	0	0	0	0	1	0	0	0	3222	1838	64	5	66	5	CELF6	15	72579669	Missense_Mutation	SNP	T	TCGA-B0-4818-01A-01D-1501-10	29219523	72579669	29951723	58	7246											
KLHL25	64410	broad.mit.edu	37	15	86312584	86312584	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	G	86312584	G	G	86312584	3	3	115	1	0	0	0	0	1	0	0	0	8387	217	8	3	1315	3	KLHL25	15	86312584	Missense_Mutation	SNP	A	TCGA-B0-4818-01A-01D-1501-10	13732915	86312584	16218808	59	7247											
ACSM3	6296	hgsc.bcm.edu;ucsc.edu	37	16	20803368	20803369	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	AA	20803369	-	AA	20803368	7	5	115	1	0	1	1	0	0	0	0	0	185	1413	49	0	1502	0	ACSM3	16	20803368	Frame_Shift_Ins	INS	-	TCGA-B0-4818-01A-01D-1501-10		20803368	69551385	60	7248											
SRCAP	10847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30747584	30747584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	30747584	G	T	30747584	3	4	115	1	0	0	0	0	1	0	0	0	15147	1261	44	4	6911	4	SRCAP	16	30747584	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	9944216	30747584	59607169	61	7249											
GPT2	84706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	46950590	46950590	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	46950590	G	T	46950590	4	4	115	1	0	0	0	0	0	1	0	0	6745	1175	41	4	893	4	GPT2	16	46950590	Nonsense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	16203006	46950590	43404163	62	7250											
CEP76	79959	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	12697299	12697299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	12697299	G	A	12697299	3	1	115	1	0	0	0	0	1	0	0	0	3263	1294	45	2	1382	2	CEP76	18	12697299	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10		12697299	65379949	63	7251											
SS18	6760	hgsc.bcm.edu;ucsc.edu	37	18	23632629	23632629	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	23632629	T	-	23632629	7	5	115	1	0	1	0	1	0	0	0	0	15187	1725	60	0	718	0	SS18	18	23632629	Frame_Shift_Del	DEL	T	TCGA-B0-4818-01A-01D-1501-10	10935330	23632629	54444619	64	7252											
ST8SIA3	51046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	55027490	55027490	+	Silent	SNP	T	T	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	55027490	T	A	55027490	2	1	115	1	0	0	0	0	0	0	0	1	15245	1538	54	5		5	ST8SIA3	18	55027490	Silent	SNP	T	TCGA-B0-4818-01A-01D-1501-10	31394861	55027490	23049758	65	7253											
ZNF536	9745	broad.mit.edu	37	19	30935867	30935867	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	30935867	-	-	30935867	7	5	115	1	0	1	0	1	0	0	0	0	17986	1335	47	0	1400	0	ZNF536	19	30935867	Frame_Shift_Del	DEL	G	TCGA-B0-4818-01A-01D-1501-10		30935867	28193116	66	7254											
C19orf46	0	broad.mit.edu;ucsc.edu	37	19	36494533	36494533	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	G	36494533	G	G	36494533	3	3	115	1	0	0	0	0	1	0	0	0	1931	681	24	4	209	4	C19orf46	19	36494533	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	5558666	36494533	22634450	67	7255											
TMEM145	284339	broad.mit.edu;ucsc.edu	37	19	42821063	42821063	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	C	42821063	C	C	42821063	3	2	115	1	0	0	0	0	1	0	0	0	16071	391	14	5	890	5	TMEM145	19	42821063	Missense_Mutation	SNP	A	TCGA-B0-4818-01A-01D-1501-10	6326530	42821063	16307920	68	7256											
PROKR2	128674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	5294646	5294646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	5294646	C	A	5294646	3	1	115	1	0	0	0	0	1	0	0	0	12563	594	21	4	791	4	PROKR2	20	5294646	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10		5294646	57730874	69	7257											
SLC5A3	6526	hgsc.bcm.edu;ucsc.edu	37	21	35468377	35468377	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	-	35468377	C	-	35468377	7	5	115	1	0	1	0	1	0	0	0	0	14679	826	29	0	882	0	SLC5A3	21	35468377	Frame_Shift_Del	DEL	C	TCGA-B0-4818-01A-01D-1501-10		35468377	12661518	70	7258											
EFHC2	80258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	44108155	44108155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	44108155	G	T	44108155	3	4	115	1	0	0	0	0	1	0	0	0	4949	1348	47	4	1423	4	EFHC2	23	44108155	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10		44108155	111162405	71	7259											
FAAH2	158584	hgsc.bcm.edu;ucsc.edu	37	X	57367784	57367784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	57367784	G	A	57367784	3	1	115	1	0	0	0	0	1	0	0	0	5358	1319	46	2	721	2	FAAH2	23	57367784	Missense_Mutation	SNP	G	TCGA-B0-4818-01A-01D-1501-10	13259629	57367784	97902776	72	7260											
UTP14A	10813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129045756	129045756	+	Silent	SNP	A	A	T	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	T	129045756	A	T	129045756	2	4	115	1	0	0	0	0	0	0	0	1	17107	407	15	5		5	UTP14A	23	129045756	Silent	SNP	A	TCGA-B0-4818-01A-01D-1501-10	71677972	129045756	26224804	73	7261											
FGF13	2258	broad.mit.edu;ucsc.edu	37	X	137793084	137793084	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4818-01A-01D-1501-10	TCGA-B0-4818-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	213bf382-c2ca-45d4-95ae-329e6653620f	c7fb63a2-c509-4f88-bfcd-53adc064c740	A	137793084	A	A	137793084	3	1	115	1	0	0	0	0	1	0	0	0	5849	478	17	4	675	4	FGF13	23	137793084	Missense_Mutation	SNP	C	TCGA-B0-4818-01A-01D-1501-10	8747328	137793084	17477476	74	7262											
KIF1B	23095	hgsc.bcm.edu;ucsc.edu	37	1	10397234	10397234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	10397234	G	A	10397234	3	1	116	1	0	0	0	0	1	0	0	0	8291	943	33	2	4689	2	KIF1B	1	10397234	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10		10397234	238853387	1	7263											
PRAMEF12	390999	hgsc.bcm.edu	37	1	12835193	12835193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	12835193	C	A	12835193	3	1	116	1	0	0	0	0	1	0	0	0	12438	825	29	4	185	4	PRAMEF12	1	12835193	Missense_Mutation	SNP	C	TCGA-B0-4819-01A-01D-1361-10	2437959	12835193	236415428	2	7264											
FAM167B	84734	hgsc.bcm.edu	37	1	32713083	32713083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	32713083	G	A	32713083	3	1	116	1	0	0	0	0	1	0	0	0	5488	1232	43	2	63	2	FAM167B	1	32713083	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	19877890	32713083	216537538	3	7265											
MACF1	23499	hgsc.bcm.edu	37	1	39900149	39900149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	39900149	G	A	39900149	3	1	116	1	0	0	0	0	1	0	0	0	9151	1319	46	2	17848	2	MACF1	1	39900149	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	7187066	39900149	209350472	4	7266											
TRIM45	80263	hgsc.bcm.edu	37	1	117660996	117660996	+	Silent	SNP	C	C	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	117660996	C	T	117660996	2	4	116	1	0	0	0	0	0	0	0	1	16532	796	28	2		2	TRIM45	1	117660996	Silent	SNP	C	TCGA-B0-4819-01A-01D-1361-10	77760847	117660996	131589625	5	7267											
FAM78B	149297	hgsc.bcm.edu	37	1	166135418	166135418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	G	166135418	A	G	166135418	3	3	116	1	0	0	0	0	1	0	0	0	5634	159	6	3	725	3	FAM78B	1	166135418	Missense_Mutation	SNP	A	TCGA-B0-4819-01A-01D-1361-10	48474422	166135418	83115203	6	7268											
CLK1	1195	hgsc.bcm.edu	37	2	201718657	201718657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	G	201718657	C	G	201718657	3	3	116	1	0	0	0	0	1	0	0	0	3538	913	32	4	182	4	CLK1	2	201718657	Missense_Mutation	SNP	C	TCGA-B0-4819-01A-01D-1361-10		201718657	41480716	7	7269											
PLEKHM3	389072	hgsc.bcm.edu	37	2	208795801	208795801	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	208795801	C	A	208795801	4	1	116	1	0	0	0	0	0	1	0	0	12089	922	32	4	566	4	PLEKHM3	2	208795801	Nonsense_Mutation	SNP	C	TCGA-B0-4819-01A-01D-1361-10	7077144	208795801	34403572	8	7270											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191470	10191470	+	Splice_Site	SNP	G	G	A	rs5030817		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	10191470	G	A	10191470	5	1	116	1	0	0	0	0	0	0	1	0	17174	1043	36	2	473	2	VHL	3	10191470	Splice_Site	SNP	G	TCGA-B0-4819-01A-01D-1361-10		10191470	187830960	9	7271											
SCN10A	6336	hgsc.bcm.edu;ucsc.edu	37	3	38798643	38798643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	38798643	G	A	38798643	3	1	116	1	0	0	0	0	1	0	0	0	13925	1232	43	2	4992	2	SCN10A	3	38798643	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	28607173	38798643	159223787	10	7272											
DHX30	22907	hgsc.bcm.edu;ucsc.edu	37	3	47891146	47891146	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	47891146	G	A	47891146	4	1	116	1	0	0	0	0	0	1	0	0	4506	1357	47	2	3303	2	DHX30	3	47891146	Nonsense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	9092503	47891146	150131284	11	7273											
SST	6750	hgsc.bcm.edu	37	3	187388007	187388007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	187388007	C	T	187388007	3	4	116	1	0	0	0	0	1	0	0	0	15208	768	27	1	285	1	SST	3	187388007	Missense_Mutation	SNP	C	TCGA-B0-4819-01A-01D-1361-10	139496861	187388007	10634423	12	7274											
MUC4	4585	hgsc.bcm.edu	37	3	195506704	195506704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	C	195506704	T	C	195506704	3	2	116	1	0	0	0	0	1	0	0	0	9985	1435	50	3		3	MUC4	3	195506704	Missense_Mutation	SNP	T	TCGA-B0-4819-01A-01D-1361-10	8118697	195506704	2515726	13	7275											
GRXCR1	389207	hgsc.bcm.edu;ucsc.edu	37	4	42895568	42895568	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	42895568	A	T	42895568	3	4	116	1	0	0	0	0	1	0	0	0	6819	243	9	5	287	5	GRXCR1	4	42895568	Missense_Mutation	SNP	A	TCGA-B0-4819-01A-01D-1361-10		42895568	148258708	14	7276											
GALNT7	51809	hgsc.bcm.edu	37	4	174223217	174223217	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	C	174223217	G	C	174223217	3	2	116	1	0	0	0	0	1	0	0	0	6225	1233	43	4	1194	4	GALNT7	4	174223217	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	131327649	174223217	16931059	15	7277											
RAPGEF6	51735	hgsc.bcm.edu;ucsc.edu	37	5	130788816	130788816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	130788816	G	T	130788816	3	4	116	1	0	0	0	0	1	0	0	0	13061	1174	41	4	2169	4	RAPGEF6	5	130788816	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10		130788816	50126444	16	7278											
ANKRD43	0	hgsc.bcm.edu;ucsc.edu	37	5	132150878	132150878	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	C	132150878	G	C	132150878	3	2	116	1	0	0	0	0	1	0	0	0	671	1261	44	4	1567	4	ANKRD43	5	132150878	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	1362062	132150878	48764382	17	7279											
ARAP3	64411	hgsc.bcm.edu	37	5	141046056	141046056	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	141046056	G	T	141046056	4	4	116	1	0	0	0	0	0	1	0	0	840	1294	45	4	2195	4	ARAP3	5	141046056	Nonsense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	8895178	141046056	39869204	18	7280											
C5orf25	0	hgsc.bcm.edu	37	5	175740819	175740819	+	Silent	SNP	T	T	G	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	G	175740819	T	G	175740819	2	3	116	1	0	0	0	0	0	0	0	1	2290	1828	64	5		5	C5orf25	5	175740819	Silent	SNP	T	TCGA-B0-4819-01A-01D-1361-10	34694763	175740819	5174441	19	7281											
HLA-C	3107	hgsc.bcm.edu	37	6	31237786	31237786	+	Silent	SNP	A	A	T	rs41556617	bycluster	TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	31237786	A	T	31237786	2	4	116	1	0	0	0	0	0	0	0	1	7204	117	5	5		5	HLA-C	6	31237786	Silent	SNP	A	TCGA-B0-4819-01A-01D-1361-10		31237786	139877281	20	7282											
ZNF704	619279	hgsc.bcm.edu;ucsc.edu	37	8	81577134	81577134	+	Silent	SNP	G	G	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	81577134	G	T	81577134	2	4	116	1	0	0	0	0	0	0	0	1	18119	1335	47	4		4	ZNF704	8	81577134	Silent	SNP	G	TCGA-B0-4819-01A-01D-1361-10		81577134	64786888	21	7283											
SPAG1	6674	hgsc.bcm.edu	37	8	101196265	101196265	+	Silent	SNP	A	A	G	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	G	101196265	A	G	101196265	2	3	116	1	0	0	0	0	0	0	0	1	14988	11	1	3		3	SPAG1	8	101196265	Silent	SNP	A	TCGA-B0-4819-01A-01D-1361-10	19619131	101196265	45167757	22	7284											
SEMA4D	10507	hgsc.bcm.edu	37	9	92017852	92017852	+	Silent	SNP	C	C	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	92017852	C	T	92017852	2	4	116	1	0	0	0	0	0	0	0	1	14047	477	17	2		2	SEMA4D	9	92017852	Silent	SNP	C	TCGA-B0-4819-01A-01D-1361-10		92017852	49195579	23	7285											
PTCH1	5727	hgsc.bcm.edu	37	9	98239880	98239880	+	Silent	SNP	T	T	C	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	C	98239880	T	C	98239880	2	2	116	1	0	0	0	0	0	0	0	1	12740	1654	58	3		3	PTCH1	9	98239880	Silent	SNP	T	TCGA-B0-4819-01A-01D-1361-10	6222028	98239880	42973551	24	7286											
ALOX5	240	hgsc.bcm.edu	37	10	45935953	45935953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	45935953	A	T	45935953	3	4	116	1	0	0	0	0	1	0	0	0	540	101	4	5	1087	5	ALOX5	10	45935953	Missense_Mutation	SNP	A	TCGA-B0-4819-01A-01D-1361-10		45935953	89598794	25	7287											
GLYAT	10249	hgsc.bcm.edu	37	11	58482866	58482866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	58482866	C	T	58482866	3	4	116	1	0	0	0	0	1	0	0	0	6486	603	21	2	798	2	GLYAT	11	58482866	Missense_Mutation	SNP	C	TCGA-B0-4819-01A-01D-1361-10		58482866	76523650	26	7288											
HEPHL1	341208	hgsc.bcm.edu	37	11	93754553	93754553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	93754553	G	T	93754553	3	4	116	1	0	0	0	0	1	0	0	0	7062	971	34	4	21	4	HEPHL1	11	93754553	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	35271687	93754553	41251963	27	7289											
ATP2A2	488	hgsc.bcm.edu	37	12	110778549	110778549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	110778549	C	T	110778549	3	4	116	1	0	0	0	0	1	0	0	0	1137	710	25	2	1901	2	ATP2A2	12	110778549	Missense_Mutation	SNP	C	TCGA-B0-4819-01A-01D-1361-10		110778549	23073346	28	7290											
DHX37	57647	hgsc.bcm.edu	37	12	125448980	125448980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	125448980	C	T	125448980	3	4	116	1	0	0	0	0	1	0	0	0	4512	797	28	2	1520	2	DHX37	12	125448980	Missense_Mutation	SNP	C	TCGA-B0-4819-01A-01D-1361-10	14670431	125448980	8402915	29	7291											
ZBTB25	7597	hgsc.bcm.edu	37	14	64953924	64953924	+	Missense_Mutation	SNP	G	G	T	rs142507817	alternate_allele	TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	64953924	G	T	64953924	3	4	116	1	0	0	0	0	1	0	0	0	17544	942	33	4	286	4	ZBTB25	14	64953924	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10		64953924	42395616	30	7292											
SPESP1	246777	hgsc.bcm.edu	37	15	69237966	69237966	+	Silent	SNP	A	A	G	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	G	69237966	A	G	69237966	2	3	116	1	0	0	0	0	0	0	0	1	15052	11	1	3		3	SPESP1	15	69237966	Silent	SNP	A	TCGA-B0-4819-01A-01D-1361-10		69237966	33293426	31	7293											
BLM	641	hgsc.bcm.edu	37	15	91306293	91306293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	91306293	T	A	91306293	3	1	116	1	0	0	0	0	1	0	0	0	1445	1403	49	5	2006	5	BLM	15	91306293	Missense_Mutation	SNP	T	TCGA-B0-4819-01A-01D-1361-10	22068327	91306293	11225099	32	7294											
IFT140	9742	hgsc.bcm.edu	37	16	1636198	1636198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	1636198	G	A	1636198	3	1	116	1	0	0	0	0	1	0	0	0	7563	1319	46	2	3388	2	IFT140	16	1636198	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10		1636198	88718555	33	7295											
ATF7IP2	80063	hgsc.bcm.edu;ucsc.edu	37	16	10525097	10525097	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	G	10525097	C	G	10525097	4	3	116	1	0	0	0	0	0	1	0	0	1088	838	29	4	622	4	ATF7IP2	16	10525097	Nonsense_Mutation	SNP	C	TCGA-B0-4819-01A-01D-1361-10	8888899	10525097	79829656	34	7296											
NFATC3	4775	hgsc.bcm.edu	37	16	68225473	68225473	+	Silent	SNP	C	C	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	68225473	C	T	68225473	2	4	116	1	0	0	0	0	0	0	0	1	10371	581	21	2		2	NFATC3	16	68225473	Silent	SNP	C	TCGA-B0-4819-01A-01D-1361-10	57700376	68225473	22129280	35	7297											
ADAMTS18	170692	hgsc.bcm.edu	37	16	77468336	77468336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	G	77468336	C	G	77468336	3	3	116	1	0	0	0	0	1	0	0	0	263	652	23	4	3596	4	ADAMTS18	16	77468336	Missense_Mutation	SNP	C	TCGA-B0-4819-01A-01D-1361-10	9242863	77468336	12886417	36	7298											
YWHAE	7531	hgsc.bcm.edu	37	17	1257623	1257623	+	Silent	SNP	A	A	G	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	G	1257623	A	G	1257623	2	3	116	1	0	0	0	0	0	0	0	1	17514	127	5	3		3	YWHAE	17	1257623	Silent	SNP	A	TCGA-B0-4819-01A-01D-1361-10		1257623	79937587	37	7299											
PITPNM3	83394	hgsc.bcm.edu	37	17	6367535	6367535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	C	6367535	G	C	6367535	3	2	116	1	0	0	0	0	1	0	0	0	11959	1232	43	4	833	4	PITPNM3	17	6367535	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	5109912	6367535	74827675	38	7300											
USP32	84669	hgsc.bcm.edu;ucsc.edu	37	17	58343414	58343414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	A	58343414	G	A	58343414	3	1	116	1	0	0	0	0	1	0	0	0	17075	942	33	2	4072	2	USP32	17	58343414	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10	51975879	58343414	22851796	39	7301											
SLC38A10	124565	hgsc.bcm.edu	37	17	79268692	79268692	+	Silent	SNP	C	C	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	79268692	C	T	79268692	2	4	116	1	0	0	0	0	0	0	0	1	14615	726	26	2		2	SLC38A10	17	79268692	Silent	SNP	C	TCGA-B0-4819-01A-01D-1361-10	20925278	79268692	1926518	40	7302											
DNMT1	1786	hgsc.bcm.edu	37	19	10244940	10244940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	G	10244940	A	G	10244940	3	3	116	1	0	0	0	0	1	0	0	0	4677	131	5	3	89	3	DNMT1	19	10244940	Missense_Mutation	SNP	A	TCGA-B0-4819-01A-01D-1361-10		10244940	48884043	41	7303											
NWD1	284434	hgsc.bcm.edu;ucsc.edu	37	19	16875873	16875873	+	Silent	SNP	C	C	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	16875873	C	T	16875873	2	4	116	1	0	0	0	0	0	0	0	1	10788	697	25	2		2	NWD1	19	16875873	Silent	SNP	C	TCGA-B0-4819-01A-01D-1361-10	6630933	16875873	42253110	42	7304											
TGM6	343641	hgsc.bcm.edu	37	20	2375966	2375966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	2375966	G	T	2375966	3	4	116	1	0	0	0	0	1	0	0	0	15846	971	34	4	318	4	TGM6	20	2375966	Missense_Mutation	SNP	G	TCGA-B0-4819-01A-01D-1361-10		2375966	60649554	43	7305											
LSS	4047	hgsc.bcm.edu	37	21	47642638	47642638	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4819-01A-01D-1361-10	TCGA-B0-4819-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5df3f4f0-5000-42a2-9e85-c3b0e93eae49	d02a7555-9cad-43ac-883c-031847eba9e2	T	47642638	A	T	47642638	3	4	116	1	0	0	0	0	1	0	0	0	9072	130	5	5	1940	5	LSS	21	47642638	Missense_Mutation	SNP	A	TCGA-B0-4819-01A-01D-1361-10		47642638	487257	44	7306											
C1orf63	57035	hgsc.bcm.edu	37	1	25569164	25569164	+	Silent	SNP	A	A	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	25569164	A	C	25569164	2	2	117	1	0	0	0	0	0	0	0	1	2055	407	15	5		5	C1orf63	1	25569164	Silent	SNP	A	TCGA-B0-4822-01A-01D-1361-10		25569164	223681457	1	7307											
WDTC1	23038	hgsc.bcm.edu	37	1	27587572	27587572	+	Silent	SNP	C	C	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	27587572	C	T	27587572	2	4	117	1	0	0	0	0	0	0	0	1	17354	506	18	2		2	WDTC1	1	27587572	Silent	SNP	C	TCGA-B0-4822-01A-01D-1361-10	2018408	27587572	221663049	2	7308											
C1orf173	127254	hgsc.bcm.edu	37	1	75037497	75037497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	75037497	G	C	75037497	3	2	117	1	0	0	0	0	1	0	0	0	2016	1368	48	4	699	4	C1orf173	1	75037497	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10	47449925	75037497	174213124	3	7309											
ABCB10	23456	hgsc.bcm.edu	37	1	229683267	229683267	+	Silent	SNP	A	A	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	229683267	A	T	229683267	2	4	117	1	0	0	0	0	0	0	0	1	41	59	3	5		5	ABCB10	1	229683267	Silent	SNP	A	TCGA-B0-4822-01A-01D-1361-10	154645770	229683267	19567354	4	7310											
RGS7	6000	hgsc.bcm.edu	37	1	240976981	240976981	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	240976981	A	C	240976981	3	2	117	1	0	0	0	0	1	0	0	0	13323	131	5	5	594	5	RGS7	1	240976981	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	11293714	240976981	8273640	5	7311											
SAP130	79595	hgsc.bcm.edu	37	2	128707901	128707901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	128707901	A	G	128707901	3	3	117	1	0	0	0	0	1	0	0	0	13844	420	15	3	689	3	SAP130	2	128707901	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10		128707901	114491472	6	7312											
GORASP2	26003	hgsc.bcm.edu	37	2	171804897	171804897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	171804897	A	T	171804897	3	4	117	1	0	0	0	0	1	0	0	0	6583	304	11	5	107	5	GORASP2	2	171804897	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	43096996	171804897	71394476	7	7313											
CWC22	57703	hgsc.bcm.edu	37	2	180815323	180815323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	180815323	C	G	180815323	3	3	117	1	0	0	0	0	1	0	0	0	4070	826	29	4	678	4	CWC22	2	180815323	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	9010426	180815323	62384050	8	7314											
INO80D	54891	hgsc.bcm.edu	37	2	206892941	206892941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	206892941	A	T	206892941	3	4	117	1	0	0	0	0	1	0	0	0	7756	217	8	5	1915	5	INO80D	2	206892941	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	26077618	206892941	36306432	9	7315											
KLF7	8609	hgsc.bcm.edu	37	2	207988751	207988751	+	Silent	SNP	G	G	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	207988751	G	A	207988751	2	1	117	1	0	0	0	0	0	0	0	1	8358	1306	46	2		2	KLF7	2	207988751	Silent	SNP	G	TCGA-B0-4822-01A-01D-1361-10	1095810	207988751	35210622	10	7316											
ABCA12	26154	hgsc.bcm.edu	37	2	215821424	215821424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	215821424	T	C	215821424	3	2	117	1	0	0	0	0	1	0	0	0	30	1812	63	3	1639	3	ABCA12	2	215821424	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	7832673	215821424	27377949	11	7317											
GIGYF2	26058	hgsc.bcm.edu	37	2	233697652	233697652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	233697652	C	A	233697652	3	1	117	1	0	0	0	0	1	0	0	0	6385	710	25	4	2763	4	GIGYF2	2	233697652	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	17876228	233697652	9501721	12	7318											
FGD5	152273	hgsc.bcm.edu	37	3	14963963	14963963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	14963963	C	A	14963963	3	1	117	1	0	0	0	0	1	0	0	0	5843	680	24	4	3773	4	FGD5	3	14963963	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10		14963963	183058467	13	7319											
LYZL4	131375	hgsc.bcm.edu	37	3	42438812	42438812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	42438812	C	A	42438812	3	1	117	1	0	0	0	0	1	0	0	0	9140	652	23	4	58	4	LYZL4	3	42438812	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	27474849	42438812	155583618	14	7320											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47158203	47158203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	47158203	C	T	47158203	3	4	117	1	0	0	0	0	1	0	0	0	14144	478	17	2	3270	2	SETD2	3	47158203	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	4719391	47158203	150864227	15	7321											
NCKIPSD	51517	hgsc.bcm.edu	37	3	48720358	48720358	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	48720358	G	C	48720358	3	2	117	1	0	0	0	0	1	0	0	0	10232	991	35	4	1957	4	NCKIPSD	3	48720358	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10	1562155	48720358	149302072	16	7322											
MST1R	4486	hgsc.bcm.edu;ucsc.edu	37	3	49936537	49936537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	49936537	T	C	49936537	3	2	117	1	0	0	0	0	1	0	0	0	9898	1464	51	3	2888	3	MST1R	3	49936537	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	1216179	49936537	148085893	17	7323											
PBRM1	55193	ucsc.edu	37	3	52598101	52598102	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	-	52598102	AG	-	52598101	7	5	117	1	0	1	0	1	0	0	0	0	11498	175	7	0	1092	0	PBRM1	3	52598101	Frame_Shift_Del	DEL	AG	TCGA-B0-4822-01A-01D-1361-10	2661564	52598101	145424329	18	7324											
BOC	91653	hgsc.bcm.edu	37	3	112998788	112998788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	112998788	T	C	112998788	3	2	117	1	0	0	0	0	1	0	0	0	1481	1696	59	3	2180	3	BOC	3	112998788	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	60400687	112998788	85023642	19	7325											
B4GALT4	8702	hgsc.bcm.edu	37	3	118945777	118945779	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	-	118945779	TGT	-	118945777	7	5	117	1	0	1	0	1	0	0	0	0	1273	1580	55	0	689	0	B4GALT4	3	118945777	In_Frame_Del	DEL	TGT	TCGA-B0-4822-01A-01D-1361-10	5946989	118945777	79076653	20	7326											
GPR125	166647	hgsc.bcm.edu;ucsc.edu	37	4	22394274	22394274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	22394274	G	C	22394274	3	2	117	1	0	0	0	0	1	0	0	0	6646	1020	36	4	1456	4	GPR125	4	22394274	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10		22394274	168760002	21	7327											
PAQR3	152559	hgsc.bcm.edu	37	4	79847693	79847693	+	Silent	SNP	A	A	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	79847693	A	T	79847693	2	4	117	1	0	0	0	0	0	0	0	1	11443	126	5	5		5	PAQR3	4	79847693	Silent	SNP	A	TCGA-B0-4822-01A-01D-1361-10	57453419	79847693	111306583	22	7328											
ANK2	287	hgsc.bcm.edu	37	4	114179539	114179539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	114179539	A	G	114179539	3	3	117	1	0	0	0	0	1	0	0	0	621	43	2	3	1433	3	ANK2	4	114179539	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	34331846	114179539	76974737	23	7329											
LNPEP	4012	hgsc.bcm.edu;ucsc.edu	37	5	96320855	96320855	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	96320855	T	G	96320855	3	3	117	1	0	0	0	0	1	0	0	0	8871	1841	64	5	942	5	LNPEP	5	96320855	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10		96320855	84594405	24	7330											
SLC22A4	6583	hgsc.bcm.edu	37	5	131662999	131662999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	131662999	T	C	131662999	3	2	117	1	0	0	0	0	1	0	0	0	14469	1406	49	3	872	3	SLC22A4	5	131662999	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	35342144	131662999	49252261	25	7331											
PCDHGA12	26025	hgsc.bcm.edu	37	5	140812569	140812570	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	-	140812570	CT	-	140812569	7	5	117	1	0	1	0	1	0	0	0	0	11560	797	28	0	2245	0	PCDHGA12	5	140812569	Frame_Shift_Del	DEL	CT	TCGA-B0-4822-01A-01D-1361-10	9149570	140812569	40102691	26	7332											
TCERG1	10915	hgsc.bcm.edu	37	5	145862191	145862191	+	Silent	SNP	A	A	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	145862191	A	G	145862191	2	3	117	1	0	0	0	0	0	0	0	1	15697	69	3	3		3	TCERG1	5	145862191	Silent	SNP	A	TCGA-B0-4822-01A-01D-1361-10	5049622	145862191	35053069	27	7333											
HAVCR2	84868	hgsc.bcm.edu;ucsc.edu	37	5	156514240	156514240	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	156514240	G	T	156514240	4	4	117	1	0	0	0	0	0	1	0	0	6981	1294	45	4	130	4	HAVCR2	5	156514240	Nonsense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10	10652049	156514240	24401020	28	7334											
KIAA0408	9729	hgsc.bcm.edu;ucsc.edu	37	6	127767753	127767753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	127767753	C	T	127767753	3	4	117	1	0	0	0	0	1	0	0	0	8181	835	29	2	381	2	KIAA0408	6	127767753	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10		127767753	43347314	29	7335											
ULBP3	79465	hgsc.bcm.edu	37	6	150386572	150386572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	150386572	T	C	150386572	3	2	117	1	0	0	0	0	1	0	0	0	16986	1667	58	3	151	3	ULBP3	6	150386572	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	22618819	150386572	20728495	30	7336											
RSPH10B2	728194	hgsc.bcm.edu	37	7	6820999	6820999	+	Missense_Mutation	SNP	G	G	A	rs17853305		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	6820999	G	A	6820999	3	1	117	1	0	0	0	0	1	0	0	0	13717	1290	45	2	4389	2	RSPH10B2	7	6820999	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10		6820999	152317664	31	7337											
TMEM196	256130	hgsc.bcm.edu	37	7	19765295	19765295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	19765295	A	G	19765295	3	3	117	1	0	0	0	0	1	0	0	0	16130	449	16	3	225	3	TMEM196	7	19765295	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	12944296	19765295	139373368	32	7338											
EGFR	1956	hgsc.bcm.edu	37	7	55223609	55223609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	55223609	T	C	55223609	3	2	117	1	0	0	0	0	1	0	0	0	4969	1696	59	3	1006	3	EGFR	7	55223609	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	35458314	55223609	103915054	33	7339											
ZNF655	79027	hgsc.bcm.edu	37	7	99170266	99170266	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	99170266	A	T	99170266	3	4	117	1	0	0	0	0	1	0	0	0	18080	14	1	5	1072	5	ZNF655	7	99170266	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	43946657	99170266	59968397	34	7340											
LAMB4	22798	hgsc.bcm.edu	37	7	107748183	107748183	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	107748183	C	G	107748183	3	3	117	1	0	0	0	0	1	0	0	0	8620	913	32	4	4917	4	LAMB4	7	107748183	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	8577917	107748183	51390480	35	7341											
PTPRZ1	5803	hgsc.bcm.edu	37	7	121678852	121678852	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	121678852	T	G	121678852	3	3	117	1	0	0	0	0	1	0	0	0	12827	1580	55	5	5485	5	PTPRZ1	7	121678852	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	13930669	121678852	37459811	36	7342											
RNF148	378925	hgsc.bcm.edu	37	7	122341888	122341888	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	122341888	T	A	122341888	3	1	117	1	0	0	0	0	1	0	0	0	13462	1761	61	5	4	5	RNF148	7	122341888	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	663036	122341888	36796775	37	7343											
SLC4A2	6522	hgsc.bcm.edu	37	7	150772527	150772527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	150772527	G	T	150772527	3	4	117	1	0	0	0	0	1	0	0	0	14667	1232	43	4	3307	4	SLC4A2	7	150772527	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10	28430639	150772527	8366136	38	7344											
CNGB3	54714	hgsc.bcm.edu	37	8	87590984	87590984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	87590984	A	G	87590984	3	3	117	1	0	0	0	0	1	0	0	0	3603	304	11	3	401	3	CNGB3	8	87590984	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10		87590984	58773038	39	7345											
IFNB1	3456	hgsc.bcm.edu	37	9	21077712	21077712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	21077712	G	A	21077712	3	1	117	1	0	0	0	0	1	0	0	0	7553	1000	35	2	410	2	IFNB1	9	21077712	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10		21077712	120135719	40	7346											
PRUNE2	158471	hgsc.bcm.edu;ucsc.edu	37	9	79465427	79465427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	79465427	T	A	79465427	3	1	117	1	0	0	0	0	1	0	0	0	12651	1435	50	5	9038	5	PRUNE2	9	79465427	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	58387715	79465427	61748004	41	7347											
USP6NL	9712	hgsc.bcm.edu	37	10	11505110	11505110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	11505110	T	G	11505110	3	3	117	1	0	0	0	0	1	0	0	0	17099	1841	64	5	673	5	USP6NL	10	11505110	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10		11505110	124029637	42	7348											
ARHGAP22	58504	hgsc.bcm.edu;ucsc.edu	37	10	49763529	49763529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	49763529	G	A	49763529	3	1	117	1	0	0	0	0	1	0	0	0	872	1319	46	2	1827	2	ARHGAP22	10	49763529	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10	38258419	49763529	85771218	43	7349											
PCDH15	65217	hgsc.bcm.edu	37	10	55582369	55582369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	55582369	C	A	55582369	3	1	117	1	0	0	0	0	1	0	0	0	11518	478	17	4	2360	4	PCDH15	10	55582369	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	5818840	55582369	79952378	44	7350											
HECTD2	143279	hgsc.bcm.edu	37	10	93185116	93185116	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	93185116	G	C	93185116	3	2	117	1	0	0	0	0	1	0	0	0	7047	1319	46	4	223	4	HECTD2	10	93185116	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10	37602747	93185116	42349631	45	7351											
TALDO1	6888	hgsc.bcm.edu	37	11	755932	755932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	755932	G	T	755932	3	4	117	1	0	0	0	0	1	0	0	0	15555	1203	42	4	157	4	TALDO1	11	755932	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10		755932	134250584	46	7352											
OR10A3	26496	hgsc.bcm.edu	37	11	7960851	7960851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	7960851	A	C	7960851	3	2	117	1	0	0	0	0	1	0	0	0	10898	14	1	5	730	5	OR10A3	11	7960851	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	7204919	7960851	127045665	47	7353											
OR10Q1	219960	hgsc.bcm.edu	37	11	57996084	57996084	+	Silent	SNP	G	G	A	rs61902844	bycluster;byfrequency;by1000genomes	TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	57996084	G	A	57996084	2	1	117	1	0	0	0	0	0	0	0	1	10923	1368	48	2		2	OR10Q1	11	57996084	Silent	SNP	G	TCGA-B0-4822-01A-01D-1361-10	50035233	57996084	77010432	48	7354											
CDC42BPG	55561	hgsc.bcm.edu	37	11	64602848	64602848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	64602848	T	C	64602848	3	2	117	1	0	0	0	0	1	0	0	0	3076	1841	64	3	2819	3	CDC42BPG	11	64602848	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10	6606764	64602848	70403668	49	7355											
RBM4	5936	hgsc.bcm.edu	37	11	66407209	66407209	+	Silent	SNP	G	G	T	rs61747408		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	66407209	G	T	66407209	2	4	117	1	0	0	0	0	0	0	0	1	13147	1306	46	4		4	RBM4	11	66407209	Silent	SNP	G	TCGA-B0-4822-01A-01D-1361-10	1804361	66407209	68599307	50	7356											
GRM5	2915	hgsc.bcm.edu	37	11	88780946	88780946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	88780946	G	A	88780946	3	1	117	1	0	0	0	0	1	0	0	0	6807	1116	39	1	3579	1	GRM5	11	88780946	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10	22373737	88780946	46225570	51	7357											
NCAPD3	23310	hgsc.bcm.edu	37	11	134051037	134051037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	134051037	C	T	134051037	3	4	117	1	0	0	0	0	1	0	0	0	10213	893	31	1	2066	1	NCAPD3	11	134051037	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	45270091	134051037	955479	52	7358											
C3AR1	719	hgsc.bcm.edu;ucsc.edu	37	12	8211783	8211783	+	Silent	SNP	G	G	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	8211783	G	A	8211783	2	1	117	1	0	0	0	0	0	0	0	1	2207	1045	37	1		1	C3AR1	12	8211783	Silent	SNP	G	TCGA-B0-4822-01A-01D-1361-10		8211783	125640112	53	7359											
ABCC9	10060	hgsc.bcm.edu	37	12	21997480	21997480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	21997480	A	C	21997480	3	2	117	1	0	0	0	0	1	0	0	0	59	127	5	5	1591	5	ABCC9	12	21997480	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	13785697	21997480	111854415	54	7360											
RAPGEF3	10411	hgsc.bcm.edu	37	12	48143214	48143214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	48143214	A	C	48143214	3	2	117	1	0	0	0	0	1	0	0	0	13058	14	1	5	1847	5	RAPGEF3	12	48143214	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	26145734	48143214	85708681	55	7361											
MLL2	8085	hgsc.bcm.edu	37	12	49442450	49442450	+	Missense_Mutation	SNP	G	G	T	rs1368572	bycluster;alternate_allele	TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	49442450	G	T	49442450	3	4	117	1	0	0	0	0	1	0	0	0	9628	991	35	4	12658	4	MLL2	12	49442450	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10	1299236	49442450	84409445	56	7362											
CIT	11113	hgsc.bcm.edu	37	12	120189889	120189889	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	120189889	G	C	120189889	3	2	117	1	0	0	0	0	1	0	0	0	3440	1377	48	4	3443	4	CIT	12	120189889	Missense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10	70747439	120189889	13662006	57	7363											
FLT1	2321	hgsc.bcm.edu	37	13	28886155	28886155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	28886155	T	G	28886155	3	3	117	1	0	0	0	0	1	0	0	0	5948	1435	50	5	569	5	FLT1	13	28886155	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10		28886155	86283723	58	7364											
PTGDR	5729	hgsc.bcm.edu	37	14	52735100	52735100	+	Nonsense_Mutation	SNP	G	G	T	rs139745811	alternate_allele	TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	52735100	G	T	52735100	4	4	117	1	0	0	0	0	0	1	0	0	12751	1059	37	4	570	4	PTGDR	14	52735100	Nonsense_Mutation	SNP	G	TCGA-B0-4822-01A-01D-1361-10		52735100	54614440	59	7365											
MTMR10	54893	hgsc.bcm.edu;ucsc.edu	37	15	31266580	31266580	+	Silent	SNP	A	A	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	31266580	A	G	31266580	2	3	117	1	0	0	0	0	0	0	0	1	9946	108	4	3		3	MTMR10	15	31266580	Silent	SNP	A	TCGA-B0-4822-01A-01D-1361-10		31266580	71264812	60	7366											
IGF1R	3480	hgsc.bcm.edu;ucsc.edu	37	15	99482570	99482570	+	Silent	SNP	T	T	C	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	C	99482570	T	C	99482570	2	2	117	1	0	0	0	0	0	0	0	1	7578	1490	52	3		3	IGF1R	15	99482570	Silent	SNP	T	TCGA-B0-4822-01A-01D-1361-10	68215990	99482570	3048822	61	7367											
CHSY1	22856	hgsc.bcm.edu	37	15	101719144	101719144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	101719144	C	A	101719144	3	1	117	1	0	0	0	0	1	0	0	0	3414	680	24	4	1554	4	CHSY1	15	101719144	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	2236574	101719144	812248	62	7368											
SIAH1	6477	hgsc.bcm.edu;ucsc.edu	37	16	48396058	48396058	+	Silent	SNP	T	T	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	48396058	T	A	48396058	2	1	117	1	0	0	0	0	0	0	0	1	14312	1625	57	5		5	SIAH1	16	48396058	Silent	SNP	T	TCGA-B0-4822-01A-01D-1361-10		48396058	41958695	63	7369											
USP32	84669	hgsc.bcm.edu	37	17	58348760	58348760	+	Silent	SNP	C	C	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	58348760	C	T	58348760	2	4	117	1	0	0	0	0	0	0	0	1	17075	912	32	2		2	USP32	17	58348760	Silent	SNP	C	TCGA-B0-4822-01A-01D-1361-10		58348760	22846450	64	7370											
PSMC5	5705	hgsc.bcm.edu	37	17	61906877	61906877	+	Silent	SNP	A	A	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	61906877	A	G	61906877	2	3	117	1	0	0	0	0	0	0	0	1	12700	11	1	3		3	PSMC5	17	61906877	Silent	SNP	A	TCGA-B0-4822-01A-01D-1361-10	3558117	61906877	19288333	65	7371											
CD300E	342510	hgsc.bcm.edu	37	17	72613554	72613554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	G	72613554	A	G	72613554	3	3	117	1	0	0	0	0	1	0	0	0	3000	304	11	3	538	3	CD300E	17	72613554	Missense_Mutation	SNP	A	TCGA-B0-4822-01A-01D-1361-10	10706677	72613554	8581656	66	7372											
TSHZ1	10194	hgsc.bcm.edu;ucsc.edu	37	18	73000294	73000294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	73000294	C	A	73000294	3	1	117	1	0	0	0	0	1	0	0	0	16635	827	29	4	2799	4	TSHZ1	18	73000294	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10		73000294	5076954	67	7373											
SRC	6714	hgsc.bcm.edu	37	20	36028584	36028584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	T	36028584	C	T	36028584	3	4	117	1	0	0	0	0	1	0	0	0	15146	739	26	2	952	2	SRC	20	36028584	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10		36028584	26996936	68	7374											
ZNF831	128611	hgsc.bcm.edu	37	20	57769303	57769303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	57769303	C	A	57769303	3	1	117	1	0	0	0	0	1	0	0	0	18197	884	31	4	3231	4	ZNF831	20	57769303	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	21740719	57769303	5256217	69	7375											
TTLL1	25809	hgsc.bcm.edu;ucsc.edu	37	22	43464514	43464514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	43464514	C	A	43464514	3	1	117	1	0	0	0	0	1	0	0	0	16734	856	30	4	894	4	TTLL1	22	43464514	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10		43464514	7840052	70	7376											
ZNF673	0	hgsc.bcm.edu;ucsc.edu	37	X	46332256	46332256	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	46332256	T	A	46332256	3	1	117	1	0	0	0	0	1	0	0	0	18092	1493	52	5	387	5	ZNF673	23	46332256	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01D-1361-10		46332256	108938304	71	7377											
CCNB3	85417	hgsc.bcm.edu	37	X	50052464	50052464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4822-01A-01D-1361-10	TCGA-B0-4822-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	f324c16b-40e7-4f30-b25e-d37ff5c4df60	b21d75ea-9540-4570-91e9-aa16a362ec29	A	50052464	C	A	50052464	3	1	117	1	0	0	0	0	1	0	0	0	2916	855	30	4	1309	4	CCNB3	23	50052464	Missense_Mutation	SNP	C	TCGA-B0-4822-01A-01D-1361-10	3720208	50052464	105218096	72	7378											
VHL	7428	hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	A	rs5030807	bycluster	TCGA-B0-4822-01A-01W-1359-10	TCGA-B0-4822-11A-01W-1359-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	fb40db0a-2dc7-4bb4-83e8-dde7422ad257	292bd8b7-b79c-475d-b7e0-b5549a8886d4	A	10183797	T	A	10183797	3	1	118	1	0	0	0	0	1	0	0	0	17174	1551	54	5	268	5	VHL	3	10183797	Missense_Mutation	SNP	T	TCGA-B0-4822-01A-01W-1359-10		10183797	187838633	1	7379											
SDF4	51150	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	1153053	1153053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	1153053	T	C	1153053	3	2	119	1	0	0	0	0	1	0	0	0	13975	1464	51	3	164	3	SDF4	1	1153053	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08		1153053	248097568	1	7380											
VPS13D	55187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12409404	12409404	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	12409404	T	G	12409404	3	3	119	1	0	0	0	0	1	0	0	0	17204	1464	51	5	9582	5	VPS13D	1	12409404	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	11256351	12409404	236841217	2	7381											
TMEM54	113452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33360935	33360935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	33360935	G	A	33360935	3	1	119	1	0	0	0	0	1	0	0	0	16192	1203	42	2	111	2	TMEM54	1	33360935	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	20951531	33360935	215889686	3	7382											
EIF2C1	26523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36372683	36372683	+	Silent	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	36372683	C	T	36372683	2	4	119	1	0	0	0	0	0	0	0	1	5007	813	29	2		2	EIF2C1	1	36372683	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	3011748	36372683	212877938	4	7383											
PTPRF	5792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44085866	44085866	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	44085866	C	G	44085866	3	3	119	1	0	0	0	0	1	0	0	0	12814	796	28	4	5322	4	PTPRF	1	44085866	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	7713183	44085866	205164755	5	7384											
DOCK7	85440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	63021612	63021612	+	Missense_Mutation	SNP	C	C	T	rs78144896	bycluster;by1000genomes;alternate_allele	TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	63021612	C	T	63021612	3	4	119	1	0	0	0	0	1	0	0	0	4694	884	31	1	3965	1	DOCK7	1	63021612	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	18935746	63021612	186229009	6	7385											
PRG4	23572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186275897	186275897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	186275897	A	G	186275897	3	3	119	1	0	0	0	0	1	0	0	0	12491	304	11	3	1068	3	PRG4	1	186275897	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	123254285	186275897	62974724	7	7386											
USH2A	7399	broad.mit.edu;hgsc.bcm.edu	37	1	215820889	215820889	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	215820889	C	T	215820889	4	4	119	1	0	0	0	0	0	1	0	0	17048	856	30	2	866	2	USH2A	1	215820889	Nonsense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	29544992	215820889	33429732	8	7387											
RRP15	51018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	218458677	218458677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	218458677	G	C	218458677	3	2	119	1	0	0	0	0	1	0	0	0	13700	1174	41	4	21	4	RRP15	1	218458677	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	2637788	218458677	30791944	9	7388											
PXDN	7837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1647244	1647244	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	1647244	C	G	1647244	3	3	119	1	0	0	0	0	1	0	0	0	12860	652	23	4	611	4	PXDN	2	1647244	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08		1647244	241552129	10	7389											
ABHD1	84696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27346840	27346840	+	Silent	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	27346840	C	G	27346840	2	3	119	1	0	0	0	0	0	0	0	1	73	610	22	4		4	ABHD1	2	27346840	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	25699596	27346840	215852533	11	7390											
RPIA	22934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	89036070	89036070	+	Silent	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	89036070	C	T	89036070	2	4	119	1	0	0	0	0	0	0	0	1	13566	871	31	1		1	RPIA	2	89036070	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	61689230	89036070	154163303	12	7391											
THSD7B	80731	hgsc.bcm.edu;ucsc.edu	37	2	138208421	138208421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	138208421	T	G	138208421	3	3	119	1	0	0	0	0	1	0	0	0	15892	1493	52	5	2927	5	THSD7B	2	138208421	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	49172351	138208421	104990952	13	7392											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179481863	179481863	+	Silent	SNP	G	G	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	179481863	G	T	179481863	2	4	119	1	0	0	0	0	0	0	0	1	16747	1103	39	4		4	TTN	2	179481863	Silent	SNP	G	TCGA-B0-4823-01A-02D-1421-08	41273442	179481863	63717510	14	7393											
TFPI	7035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	188349545	188349545	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	188349545	T	G	188349545	3	3	119	1	0	0	0	0	1	0	0	0	15820	1606	56	5	534	5	TFPI	2	188349545	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	8867682	188349545	54849828	15	7394											
DNAH7	56171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	196753118	196753118	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	196753118	A	T	196753118	4	4	119	1	0	0	0	0	0	1	0	0	4608	372	13	5	6936	5	DNAH7	2	196753118	Nonsense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	8403573	196753118	46446255	16	7395											
DOCK10	55619	broad.mit.edu	37	2	225661099	225661099	+	Silent	SNP	T	C	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	225661099	C	C	225661099	2	2	119	1	0	0	0	0	0	0	0	1	4687	1538	54	3		3	DOCK10	2	225661099	Silent	SNP	T	TCGA-B0-4823-01A-02D-1421-08	28907981	225661099	17538274	17	7396											
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238267874	238267874	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	238267874	C	G	238267874	3	3	119	1	0	0	0	0	1	0	0	0	3703	855	30	4	3308	4	COL6A3	2	238267874	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	12606775	238267874	4931499	18	7397											
SNED1	25992	broad.mit.edu	37	2	241976725	241976725	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	241976725	T	T	241976725	3	4	119	1	0	0	0	0	1	0	0	0	14858	652	23	1	1022	1	SNED1	2	241976725	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	3708851	241976725	1222648	19	7398											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188204	10188205	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	-	10188205	TT	-	10188204	7	5	119	1	0	1	0	1	0	0	0	0	17174	1609	56	0	353	0	VHL	3	10188204	Frame_Shift_Del	DEL	TT	TCGA-B0-4823-01A-02D-1421-08		10188204	187834226	20	7399											
MCM2	4171	hgsc.bcm.edu	37	3	127323892	127323893	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	127323893	-	G	127323892	7	5	119	1	0	1	1	0	0	0	0	0	9393	768	27	0	580	0	MCM2	3	127323892	Frame_Shift_Ins	INS	-	TCGA-B0-4823-01A-02D-1421-08	117135688	127323892	70698538	21	7400											
MCM2	4171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	127325478	127325478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	127325478	C	A	127325478	3	1	119	1	0	0	0	0	1	0	0	0	9393	652	23	4	941	4	MCM2	3	127325478	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	1586	127325478	70696952	22	7401											
MECOM	2122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	168802758	168802758	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	168802758	C	T	168802758	4	4	119	1	0	0	0	0	0	1	0	0	9429	595	21	2	64	2	MECOM	3	168802758	Nonsense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	41477280	168802758	29219672	23	7402											
EIF4G1	1981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184049133	184049133	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	184049133	G	C	184049133	3	2	119	1	0	0	0	0	1	0	0	0	5038	1261	44	4	4347	4	EIF4G1	3	184049133	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	15246375	184049133	13973297	24	7403											
C3orf59	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	192516184	192516184	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	192516184	T	A	192516184	3	1	119	1	0	0	0	0	1	0	0	0	2239	1490	52	5	12	5	C3orf59	3	192516184	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	8467051	192516184	5506246	25	7404											
CD38	952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	15818217	15818217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	15818217	A	G	15818217	3	3	119	1	0	0	0	0	1	0	0	0	3011	449	16	3	323	3	CD38	4	15818217	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08		15818217	175336059	26	7405											
UGT2A1	10941	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	70464995	70464995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	70464995	A	C	70464995	3	2	119	1	0	0	0	0	1	0	0	0	16965	131	5	5	770	5	UGT2A1	4	70464995	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	54646778	70464995	120689281	27	7406											
SHROOM3	57619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77677855	77677855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	77677855	G	A	77677855	3	1	119	1	0	0	0	0	1	0	0	0	14308	1029	36	2	4993	2	SHROOM3	4	77677855	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	7212860	77677855	113476421	28	7407											
SCLT1	132320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	129812271	129812271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	129812271	T	G	129812271	3	3	119	1	0	0	0	0	1	0	0	0	13919	1722	60	5	227	5	SCLT1	4	129812271	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	52134416	129812271	61342005	29	7408											
ELF2	1998	broad.mit.edu;hgsc.bcm.edu	37	4	139980658	139980658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	139980658	T	C	139980658	3	2	119	1	0	0	0	0	1	0	0	0	5056	1725	60	3	524	3	ELF2	4	139980658	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	10168387	139980658	51173618	30	7409											
SLC12A7	10723	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	1073766	1073766	+	Silent	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	1073766	C	T	1073766	2	4	119	1	0	0	0	0	0	0	0	1	14401	680	24	2		2	SLC12A7	5	1073766	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08		1073766	179841494	31	7410											
C5orf22	55322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	31538683	31538683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	31538683	G	T	31538683	3	4	119	1	0	0	0	0	1	0	0	0	2287	1319	46	4	708	4	C5orf22	5	31538683	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	30464917	31538683	149376577	32	7411											
MCCC2	64087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	70928000	70928000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	70928000	A	G	70928000	3	3	119	1	0	0	0	0	1	0	0	0	9382	333	12	3	821	3	MCCC2	5	70928000	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	39389317	70928000	109987260	33	7412											
AFF4	27125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	132228042	132228042	+	Silent	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	132228042	C	T	132228042	2	4	119	1	0	0	0	0	0	0	0	1	359	726	26	2		2	AFF4	5	132228042	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	61300042	132228042	48687218	34	7413											
PCDHGA10	56106	hgsc.bcm.edu	37	5	140795208	140795209	+	Frame_Shift_Ins	INS	-	-	A	rs113784532		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	140795209	-	A	140795208	7	5	119	1	0	1	1	0	0	0	0	0	11558	1741	61	0	2468	0	PCDHGA10	5	140795208	Frame_Shift_Ins	INS	-	TCGA-B0-4823-01A-02D-1421-08	8567166	140795208	40120052	35	7414											
GALNT10	55568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	153755895	153755895	+	Silent	SNP	T	T	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	153755895	T	G	153755895	2	3	119	1	0	0	0	0	0	0	0	1	6215	1770	62	5		5	GALNT10	5	153755895	Silent	SNP	T	TCGA-B0-4823-01A-02D-1421-08	12960687	153755895	27159365	36	7415											
KIF13A	63971	hgsc.bcm.edu;ucsc.edu	37	6	17764666	17764666	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	-	17764666	G	-	17764666	7	5	119	1	0	1	0	1	0	0	0	0	8281	1294	45	0	353	0	KIF13A	6	17764666	Frame_Shift_Del	DEL	G	TCGA-B0-4823-01A-02D-1421-08		17764666	153350401	37	7416											
MTCH1	23787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36938212	36938212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	36938212	A	G	36938212	3	3	119	1	0	0	0	0	1	0	0	0	9920	43	2	3	189	3	MTCH1	6	36938212	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	19173546	36938212	134176855	38	7417											
TRDN	10345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	123545248	123545248	+	Silent	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	123545248	C	T	123545248	2	4	119	1	0	0	0	0	0	0	0	1	16480	912	32	2		2	TRDN	6	123545248	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	86607036	123545248	47569819	39	7418											
ECHDC1	55862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	127652111	127652111	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	-	127652111	T	-	127652111	7	5	119	1	0	1	0	1	0	0	0	0	4895	1567	55	0	862	0	ECHDC1	6	127652111	Frame_Shift_Del	DEL	T	TCGA-B0-4823-01A-02D-1421-08	4106863	127652111	43462956	40	7419											
EPB41L2	2037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	131179363	131179363	+	Silent	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	131179363	C	T	131179363	2	4	119	1	0	0	0	0	0	0	0	1	5155	622	22	2		2	EPB41L2	6	131179363	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	3527252	131179363	39935704	41	7420											
PPIL4	85313	broad.mit.edu;hgsc.bcm.edu	37	6	149838586	149838586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	149838586	C	A	149838586	3	1	119	1	0	0	0	0	1	0	0	0	12339	521	18	4	507	4	PPIL4	6	149838586	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	18659223	149838586	21276481	42	7421											
NUPL2	11097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23240190	23240190	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	23240190	T	A	23240190	3	1	119	1	0	0	0	0	1	0	0	0	10782	1403	49	5	1124	5	NUPL2	7	23240190	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08		23240190	135898473	43	7422											
NOD1	10392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	30486629	30486629	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	30486629	A	T	30486629	3	4	119	1	0	0	0	0	1	0	0	0	10523	391	14	5	566	5	NOD1	7	30486629	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	7246439	30486629	128652034	44	7423											
PSMA2	5683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	42964387	42964387	+	Silent	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	42964387	C	A	42964387	2	1	119	1	0	0	0	0	0	0	0	1	12677	697	25	4		4	PSMA2	7	42964387	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	12477758	42964387	116174276	45	7424											
MAGI2	9863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	79082436	79082436	+	Silent	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	79082436	C	A	79082436	2	1	119	1	0	0	0	0	0	0	0	1	9198	581	21	4		4	MAGI2	7	79082436	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	36118049	79082436	80056227	46	7425											
C7orf63	79846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	89937153	89937153	+	Silent	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	89937153	C	T	89937153	2	4	119	1	0	0	0	0	0	0	0	1	2411	535	19	1		1	C7orf63	7	89937153	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	10854717	89937153	69201510	47	7426											
ZC3HC1	51530	hgsc.bcm.edu;ucsc.edu	37	7	129663471	129663471	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	-	129663471	G	-	129663471	7	5	119	1	0	1	0	1	0	0	0	0	17589	1335	47	0	407	0	ZC3HC1	7	129663471	Frame_Shift_Del	DEL	G	TCGA-B0-4823-01A-02D-1421-08	39726318	129663471	29475192	48	7427											
ACCN3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150748965	150748965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	150748965	C	T	150748965	3	4	119	1	0	0	0	0	1	0	0	0	130	739	26	2	1309	2	ACCN3	7	150748965	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	21085494	150748965	8389698	49	7428											
INSIG1	3638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	155094505	155094505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	155094505	A	G	155094505	3	3	119	1	0	0	0	0	1	0	0	0	7772	449	16	3	767	3	INSIG1	7	155094505	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	4345540	155094505	4044158	50	7429											
CDCA2	157313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	25325823	25325823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	25325823	C	A	25325823	3	1	119	1	0	0	0	0	1	0	0	0	3088	913	32	4	647	4	CDCA2	8	25325823	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08		25325823	121038199	51	7430											
IDO2	169355	broad.mit.edu;hgsc.bcm.edu	37	8	39836668	39836668	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	39836668	G	C	39836668	3	2	119	1	0	0	0	0	1	0	0	0	7509	1261	44	4	331	4	IDO2	8	39836668	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	14510845	39836668	106527354	52	7431											
ANK1	286	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	41552240	41552240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	41552240	A	C	41552240	3	2	119	1	0	0	0	0	1	0	0	0	620	217	8	5	2834	5	ANK1	8	41552240	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	1715572	41552240	104811782	53	7432											
CHD7	55636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	61761689	61761689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	61761689	C	A	61761689	3	1	119	1	0	0	0	0	1	0	0	0	3332	681	24	4	5474	4	CHD7	8	61761689	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	20209449	61761689	84602333	54	7433											
TSNARE1	203062	broad.mit.edu	37	8	143425602	143425602	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	143425602	T	T	143425602	3	4	119	1	0	0	0	0	1	0	0	0	16642	1232	43	4	1111	4	TSNARE1	8	143425602	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	81663913	143425602	2938420	55	7434											
DGAT1	8694	broad.mit.edu;hgsc.bcm.edu	37	8	145540325	145540325	+	Silent	SNP	G	G	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	145540325	G	C	145540325	2	2	119	1	0	0	0	0	0	0	0	1	4459	1306	46	4		4	DGAT1	8	145540325	Silent	SNP	G	TCGA-B0-4823-01A-02D-1421-08	2114723	145540325	823697	56	7435											
RMI1	80010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	86616068	86616068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	86616068	G	T	86616068	3	4	119	1	0	0	0	0	1	0	0	0	13408	1357	47	4	169	4	RMI1	9	86616068	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08		86616068	54597363	57	7436	78	2									
RMI1	80010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	86616070	86616070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	86616070	C	T	86616070	3	4	119	1	0	0	0	0	1	0	0	0	13408	797	28	2	171	2	RMI1	9	86616070	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	2	86616070	54597361	58	7437	78	2									
ABCA1	19	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	107651383	107651383	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	107651383	A	T	107651383	3	4	119	1	0	0	0	0	1	0	0	0	28	231	8	5	6817	5	ABCA1	9	107651383	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	21035313	107651383	33562048	59	7438											
SEC16A	9919	hgsc.bcm.edu;ucsc.edu	37	9	139369004	139369006	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	-	139369006	TTT	-	139369004	7	5	119	1	0	1	0	1	0	0	0	0	13999	1609	56	0	4129	0	SEC16A	9	139369004	In_Frame_Del	DEL	TTT	TCGA-B0-4823-01A-02D-1421-08	31717621	139369004	1844427	60	7439											
C9orf86	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139722995	139722995	+	Silent	SNP	G	G	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	139722995	G	A	139722995	2	1	119	1	0	0	0	0	0	0	0	1	2504	991	35	2		2	C9orf86	9	139722995	Silent	SNP	G	TCGA-B0-4823-01A-02D-1421-08	353991	139722995	1490436	61	7440											
MAN1B1	11253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	140002045	140002045	+	Silent	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	140002045	C	T	140002045	2	4	119	1	0	0	0	0	0	0	0	1	9219	755	27	1		1	MAN1B1	9	140002045	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	279050	140002045	1211386	62	7441											
FBXO18	84893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	5948166	5948166	+	Silent	SNP	T	T	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	5948166	T	C	5948166	2	2	119	1	0	0	0	0	0	0	0	1	5738	1693	59	3		3	FBXO18	10	5948166	Silent	SNP	T	TCGA-B0-4823-01A-02D-1421-08		5948166	129586581	63	7442											
MYO3A	53904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	26414398	26414398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	26414398	G	A	26414398	3	1	119	1	0	0	0	0	1	0	0	0	10083	1001	35	2	2041	2	MYO3A	10	26414398	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	20466232	26414398	109120349	64	7443											
ANKRD26	22852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	27301965	27301967	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	-	27301967	GTG	-	27301965	7	5	119	1	0	1	0	1	0	0	0	0	654	1029	36	0	345	0	ANKRD26	10	27301965	In_Frame_Del	DEL	GTG	TCGA-B0-4823-01A-02D-1421-08	887567	27301965	108232782	65	7444											
PPRC1	23082	broad.mit.edu;hgsc.bcm.edu	37	10	103899302	103899302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	103899302	T	A	103899302	3	1	119	1	0	0	0	0	1	0	0	0	12420	1580	55	5	1055	5	PPRC1	10	103899302	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	76597337	103899302	31635445	66	7445											
SLC22A10	387775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63059039	63059039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	63059039	C	A	63059039	3	1	119	1	0	0	0	0	1	0	0	0	14454	564	20	4	436	4	SLC22A10	11	63059039	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08		63059039	71947477	67	7446											
RCOR2	283248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63682222	63682222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	63682222	T	C	63682222	3	2	119	1	0	0	0	0	1	0	0	0	13196	1696	59	3	1218	3	RCOR2	11	63682222	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	623183	63682222	71324294	68	7447											
PRDX5	25824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64088367	64088367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	64088367	T	G	64088367	3	3	119	1	0	0	0	0	1	0	0	0	12478	1609	56	5	483	5	PRDX5	11	64088367	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	406145	64088367	70918149	69	7448											
CCDC88B	283234	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64111946	64111946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	64111946	G	T	64111946	3	4	119	1	0	0	0	0	1	0	0	0	2866	1232	43	4	1987	4	CCDC88B	11	64111946	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	23579	64111946	70894570	70	7449											
MMP12	4321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	102742668	102742668	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	102742668	G	C	102742668	3	2	119	1	0	0	0	0	1	0	0	0	9658	1377	48	4	1078	4	MMP12	11	102742668	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	38630722	102742668	32263848	71	7450											
CARD17	440068	hgsc.bcm.edu;ucsc.edu	37	11	104971490	104971490	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	-	104971490	C	-	104971490	7	5	119	1	0	1	0	1	0	0	0	0	2650	912	32	0	316	0	CARD17	11	104971490	Frame_Shift_Del	DEL	C	TCGA-B0-4823-01A-02D-1421-08	2228822	104971490	30035026	72	7451											
ZW10	9183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	113607443	113607443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	113607443	G	T	113607443	3	4	119	1	0	0	0	0	1	0	0	0	18259	1368	48	4	229	4	ZW10	11	113607443	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	8635953	113607443	21399073	73	7452											
CCDC77	84318	broad.mit.edu;ucsc.edu	37	12	518533	518533	+	Splice_Site	DEL	G	-	-	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	-	518533	-	-	518533	8	5	119	1	0	1	0	1	0	0	1	0	2853	1014	35	0		0	CCDC77	12	518533	Splice_Site	DEL	G	TCGA-B0-4823-01A-02D-1421-08		518533	133333362	74	7453											
A2ML1	144568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9000255	9000255	+	Silent	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	9000255	C	A	9000255	2	1	119	1	0	0	0	0	0	0	0	1	5	900	32	4		4	A2ML1	12	9000255	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	8481722	9000255	124851640	75	7454											
PZP	5858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9316306	9316306	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	9316306	C	G	9316306	3	3	119	1	0	0	0	0	1	0	0	0	12882	912	32	4	1818	4	PZP	12	9316306	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	316051	9316306	124535589	76	7455											
PLBD1	79887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14689601	14689601	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	14689601	T	A	14689601	3	1	119	1	0	0	0	0	1	0	0	0	12032	1435	50	5	1087	5	PLBD1	12	14689601	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	5373295	14689601	119162294	77	7456											
ACVR1B	91	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52374824	52374824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	52374824	T	A	52374824	3	1	119	1	0	0	0	0	1	0	0	0	221	1725	60	5	666	5	ACVR1B	12	52374824	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	37685223	52374824	81477071	78	7457											
KRT74	121391	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52967395	52967395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	52967395	T	A	52967395	3	1	119	1	0	0	0	0	1	0	0	0	8494	1493	52	5	1458	5	KRT74	12	52967395	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08	592571	52967395	80884500	79	7458	79	2									
KRT74	121391	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52967397	52967397	+	Silent	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	52967397	C	A	52967397	2	1	119	1	0	0	0	0	0	0	0	1	8494	842	30	4		4	KRT74	12	52967397	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	2	52967397	80884498	80	7459	79	2									
TENC1	23371	broad.mit.edu;ucsc.edu	37	12	53453510	53453510	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	53453510	C	C	53453510	3	2	119	1	0	0	0	0	1	0	0	0	15770	933	33	4	2264	4	TENC1	12	53453510	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	486113	53453510	80398385	81	7460											
PRR13	54458	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53837461	53837461	+	Silent	SNP	A	A	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	53837461	A	G	53837461	2	3	119	1	0	0	0	0	0	0	0	1	12595	175	7	3		3	PRR13	12	53837461	Silent	SNP	A	TCGA-B0-4823-01A-02D-1421-08	383951	53837461	80014434	82	7461											
MON2	23041	hgsc.bcm.edu;ucsc.edu	37	12	62892790	62892790	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	-	62892790	T	-	62892790	7	5	119	1	0	1	0	1	0	0	0	0	9707	1725	60	0	545	0	MON2	12	62892790	Frame_Shift_Del	DEL	T	TCGA-B0-4823-01A-02D-1421-08	9055329	62892790	70959105	83	7462											
LTA4H	4048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	96421288	96421288	+	Silent	SNP	A	A	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	96421288	A	G	96421288	2	3	119	1	0	0	0	0	0	0	0	1	9076	291	11	3		3	LTA4H	12	96421288	Silent	SNP	A	TCGA-B0-4823-01A-02D-1421-08	33528498	96421288	37430607	84	7463											
ZMYM2	7750	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	20567391	20567391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	20567391	T	A	20567391	3	1	119	1	0	0	0	0	1	0	0	0	17712	1725	60	5	181	5	ZMYM2	13	20567391	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08		20567391	94602487	85	7464											
GRTP1	79774	broad.mit.edu;ucsc.edu	37	13	114018185	114018185	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	114018185	A	A	114018185	3	1	119	1	0	0	0	0	1	0	0	0	6817	884	31	4	965	4	GRTP1	13	114018185	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	93450794	114018185	1151693	86	7465											
MYH6	4624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23872974	23872974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	23872974	C	T	23872974	3	4	119	1	0	0	0	0	1	0	0	0	10045	681	24	2	5194	2	MYH6	14	23872974	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08		23872974	83476566	87	7466											
SIX6	4990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	60977812	60977812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	60977812	C	G	60977812	3	3	119	1	0	0	0	0	1	0	0	0	14364	711	25	4	589	4	SIX6	14	60977812	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	37104838	60977812	46371728	88	7467											
ENTPD5	957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74454758	74454758	+	Silent	SNP	A	A	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	74454758	A	G	74454758	2	3	119	1	0	0	0	0	0	0	0	1	5144	157	6	3		3	ENTPD5	14	74454758	Silent	SNP	A	TCGA-B0-4823-01A-02D-1421-08	13476946	74454758	32894782	89	7468											
AHNAK2	113146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	105416511	105416511	+	Silent	SNP	G	G	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	105416511	G	C	105416511	2	2	119	1	0	0	0	0	0	0	0	1	415	1219	43	4		4	AHNAK2	14	105416511	Silent	SNP	G	TCGA-B0-4823-01A-02D-1421-08	30961753	105416511	1933029	90	7469											
MTA1	9112	broad.mit.edu	37	14	105930474	105930474	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	105930474	C	C	105930474	3	2	119	1	0	0	0	0	1	0	0	0	9915	933	33	4	1232	4	MTA1	14	105930474	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	513963	105930474	1419066	91	7470											
PSMA4	5685	broad.mit.edu	37	15	78838990	78838990	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	78838990	G	G	78838990	3	3	119	1	0	0	0	0	1	0	0	0	12679	1435	50	5	607	5	PSMA4	15	78838990	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08		78838990	23692402	92	7471											
ALPK3	57538	broad.mit.edu;ucsc.edu	37	15	85360311	85360311	+	Silent	SNP	G	T	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	85360311	T	T	85360311	2	4	119	1	0	0	0	0	0	0	0	1	546	1161	41	4		4	ALPK3	15	85360311	Silent	SNP	G	TCGA-B0-4823-01A-02D-1421-08	6521321	85360311	17171081	93	7472											
PRC1	9055	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91517903	91517903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	91517903	A	T	91517903	3	4	119	1	0	0	0	0	1	0	0	0	12456	14	1	5	624	5	PRC1	15	91517903	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	6157592	91517903	11013489	94	7473											
ABCC11	85320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	48256589	48256589	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	48256589	T	A	48256589	3	1	119	1	0	0	0	0	1	0	0	0	51	1579	55	5	3551	5	ABCC11	16	48256589	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08		48256589	42098164	95	7474											
NLRC5	84166	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57104485	57104485	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	57104485	C	G	57104485	3	3	119	1	0	0	0	0	1	0	0	0	10477	768	27	4	4764	4	NLRC5	16	57104485	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	8847896	57104485	33250268	96	7475											
DUS2L	54920	hgsc.bcm.edu;ucsc.edu	37	16	68112666	68112666	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	68112666	A	C	68112666	3	2	119	1	0	0	0	0	1	0	0	0	4808	14	1	5	1317	5	DUS2L	16	68112666	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	11008181	68112666	22242087	97	7476											
PLA2G15	23659	broad.mit.edu;hgsc.bcm.edu	37	16	68283194	68283194	+	Silent	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	68283194	C	T	68283194	2	4	119	1	0	0	0	0	0	0	0	1	11999	869	30	2		2	PLA2G15	16	68283194	Silent	SNP	C	TCGA-B0-4823-01A-02D-1421-08	170528	68283194	22071559	98	7477											
PIGL	9487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	16120578	16120578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	16120578	T	C	16120578	3	2	119	1	0	0	0	0	1	0	0	0	11898	1667	58	3	40	3	PIGL	17	16120578	Missense_Mutation	SNP	T	TCGA-B0-4823-01A-02D-1421-08		16120578	65074632	99	7478											
THRA	7067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38243108	38243108	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	38243108	T	A	38243108	5	1	119	1	0	0	0	0	0	0	1	0	15885	1710	59	5	747	5	THRA	17	38243108	Splice_Site	SNP	T	TCGA-B0-4823-01A-02D-1421-08	22122530	38243108	42952102	100	7479											
STAT3	6774	broad.mit.edu;hgsc.bcm.edu	37	17	40476790	40476790	+	Silent	SNP	G	G	A	rs1064115	bycluster;alternate_allele	TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	40476790	G	A	40476790	2	1	119	1	0	0	0	0	0	0	0	1	15278	987	35	2		2	STAT3	17	40476790	Silent	SNP	G	TCGA-B0-4823-01A-02D-1421-08	2233682	40476790	40718420	101	7480											
FMNL1	752	broad.mit.edu;hgsc.bcm.edu	37	17	43318890	43318890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	43318890	C	A	43318890	3	1	119	1	0	0	0	0	1	0	0	0	5958	912	32	4	1528	4	FMNL1	17	43318890	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	2842100	43318890	37876320	102	7481											
SAMD14	201191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48191795	48191795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	48191795	G	T	48191795	3	4	119	1	0	0	0	0	1	0	0	0	13832	991	35	4	521	4	SAMD14	17	48191795	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	4872905	48191795	33003415	103	7482											
BPTF	2186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	65909128	65909128	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	65909128	A	T	65909128	4	4	119	1	0	0	0	0	0	1	0	0	1497	15	1	5	5556	5	BPTF	17	65909128	Nonsense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	17717333	65909128	15286082	104	7483											
CDH2	1000	hgsc.bcm.edu	37	18	25570227	25570228	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	25570228	-	C	25570227	7	5	119	1	0	1	1	0	0	0	0	0	3107	1232	43	0	1316	0	CDH2	18	25570227	Frame_Shift_Ins	INS	-	TCGA-B0-4823-01A-02D-1421-08		25570227	52507021	105	7484											
ASXL3	80816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	31311969	31311969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	31311969	C	G	31311969	3	3	119	1	0	0	0	0	1	0	0	0	1068	797	28	4	951	4	ASXL3	18	31311969	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	5741742	31311969	46765279	106	7485											
CELF4	56853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	34833794	34833794	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	34833794	C	G	34833794	3	3	119	1	0	0	0	0	1	0	0	0	3220	913	32	4	23	4	CELF4	18	34833794	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	3521825	34833794	43243454	107	7486											
ZNF77	58492	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2934740	2934740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	2934740	G	C	2934740	3	2	119	1	0	0	0	0	1	0	0	0	18154	1000	35	4	1256	4	ZNF77	19	2934740	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08		2934740	56194243	108	7487											
SMARCA4	6597	hgsc.bcm.edu;ucsc.edu	37	19	11100029	11100030	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	GAA	11100030	-	GAA	11100029	7	5	119	1	0	1	1	0	0	0	0	0	14783	1799	63	0	1177	0	SMARCA4	19	11100029	In_Frame_Ins	INS	-	TCGA-B0-4823-01A-02D-1421-08	8165289	11100029	48028954	109	7488											
CHERP	10523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	16634081	16634081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	16634081	G	T	16634081	3	4	119	1	0	0	0	0	1	0	0	0	3338	1348	47	4	1016	4	CHERP	19	16634081	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	5534052	16634081	42494902	110	7489											
NOP56	10528	hgsc.bcm.edu	37	20	2637724	2637724	+	RNA	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	2637724	C	G	2637724	1	3	119	0	1	0	0	0	0	0	0	0	10546	609	21	4		4	NOP56	20	2637724	RNA	SNP	C	TCGA-B0-4823-01A-02D-1421-08		2637724	60387796	111	7490											
SIGLEC1	6614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3677901	3677901	+	Silent	SNP	G	G	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	3677901	G	C	3677901	2	2	119	1	0	0	0	0	0	0	0	1	14318	1306	46	4		4	SIGLEC1	20	3677901	Silent	SNP	G	TCGA-B0-4823-01A-02D-1421-08	1040177	3677901	59347619	112	7491											
HCK	3055	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30671834	30671834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	30671834	G	A	30671834	3	1	119	1	0	0	0	0	1	0	0	0	7001	1174	41	2	702	2	HCK	20	30671834	Missense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	26993933	30671834	32353686	113	7492											
DNMT3B	1789	hgsc.bcm.edu;ucsc.edu	37	20	31386266	31386266	+	Silent	SNP	G	G	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	31386266	G	T	31386266	2	4	119	1	0	0	0	0	0	0	0	1	4679	1275	44	4		4	DNMT3B	20	31386266	Silent	SNP	G	TCGA-B0-4823-01A-02D-1421-08	714432	31386266	31639254	114	7493											
MAP1LC3A	84557	broad.mit.edu;hgsc.bcm.edu	37	20	33147238	33147238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	33147238	G	T	33147238	4	4	119	1	0	0	0	0	0	1	0	0	9237	1059	37	4	250	4	MAP1LC3A	20	33147238	Nonsense_Mutation	SNP	G	TCGA-B0-4823-01A-02D-1421-08	1760972	33147238	29878282	115	7494											
SLC32A1	140679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	37356752	37356752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	T	37356752	C	T	37356752	3	4	119	1	0	0	0	0	1	0	0	0	14578	797	28	2	1054	2	SLC32A1	20	37356752	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08	4209514	37356752	25668768	116	7495											
RNF114	55905	hgsc.bcm.edu;ucsc.edu	37	20	48561952	48561952	+	Missense_Mutation	SNP	A	A	G	rs143932352	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	48561952	A	G	48561952	3	3	119	1	0	0	0	0	1	0	0	0	13442	391	14	3	335	3	RNF114	20	48561952	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08	11205200	48561952	14463568	117	7496											
KRTAP10-4	386672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	45993662	45993662	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	G	45993662	C	G	45993662	3	3	119	1	0	0	0	0	1	0	0	0	8518	796	28	4	29	4	KRTAP10-4	21	45993662	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08		45993662	2136233	118	7497											
FBXO7	25793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	32875201	32875201	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	C	32875201	A	C	32875201	3	2	119	1	0	0	0	0	1	0	0	0	5767	130	5	5	403	5	FBXO7	22	32875201	Missense_Mutation	SNP	A	TCGA-B0-4823-01A-02D-1421-08		32875201	18429365	119	7498											
FIGF	2277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	15402054	15402054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	15402054	C	A	15402054	3	1	119	1	0	0	0	0	1	0	0	0	5896	624	22	4	1077	4	FIGF	23	15402054	Missense_Mutation	SNP	C	TCGA-B0-4823-01A-02D-1421-08		15402054	139868506	120	7499											
HDAC6	10013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48681371	48681371	+	Silent	SNP	G	G	A	novel		TCGA-B0-4823-01A-02D-1421-08	TCGA-B0-4823-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9f790e7e-3475-4242-82fc-cbdd461ce5ef	48a6852a-43e1-453d-a792-b46e6d01e275	A	48681371	G	A	48681371	2	1	119	1	0	0	0	0	0	0	0	1	7018	991	35	2		2	HDAC6	23	48681371	Silent	SNP	G	TCGA-B0-4823-01A-02D-1421-08	33279317	48681371	106589189	121	7500											
SPOCD1	90853	hgsc.bcm.edu	37	1	32280241	32280241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	32280241	G	T	32280241	3	4	120	1	0	0	0	0	1	0	0	0	15090	1232	43	4	3016	4	SPOCD1	1	32280241	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10		32280241	216970380	1	7501											
CSMD2	114784	hgsc.bcm.edu;ucsc.edu	37	1	34166201	34166201	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	34166201	A	C	34166201	3	2	120	1	0	0	0	0	1	0	0	0	3947	11	1	5	7122	5	CSMD2	1	34166201	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	1885960	34166201	215084420	2	7502											
RLF	6018	hgsc.bcm.edu;ucsc.edu	37	1	40702738	40702738	+	Silent	SNP	T	T	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	40702738	T	G	40702738	2	3	120	1	0	0	0	0	0	0	0	1	13402	1828	64	5		5	RLF	1	40702738	Silent	SNP	T	TCGA-B0-4824-01A-01D-1361-10	6536537	40702738	208547883	3	7503											
TAF13	6884	hgsc.bcm.edu	37	1	109617620	109617620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	109617620	A	T	109617620	3	4	120	1	0	0	0	0	1	0	0	0	15529	14	1	5	291	5	TAF13	1	109617620	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	68914882	109617620	139633001	4	7504											
SYT6	148281	hgsc.bcm.edu	37	1	114640500	114640500	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	114640500	C	T	114640500	5	4	120	1	0	0	0	0	0	0	1	0	15490	927	32	2	176	2	SYT6	1	114640500	Splice_Site	SNP	C	TCGA-B0-4824-01A-01D-1361-10	5022880	114640500	134610121	5	7505											
PDE4DIP	9659	hgsc.bcm.edu	37	1	144868085	144868085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	144868085	T	A	144868085	3	1	120	1	0	0	0	0	1	0	0	0	11650	1580	55	5	1734	5	PDE4DIP	1	144868085	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	30227585	144868085	104382536	6	7506											
FLG	2312	hgsc.bcm.edu;ucsc.edu	37	1	152284057	152284057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	152284057	G	T	152284057	3	4	120	1	0	0	0	0	1	0	0	0	5929	1174	41	4	8884	4	FLG	1	152284057	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	7415972	152284057	96966564	7	7507											
TDRD10	126668	hgsc.bcm.edu	37	1	154517301	154517301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	154517301	G	T	154517301	3	4	120	1	0	0	0	0	1	0	0	0	15743	1241	43	4	866	4	TDRD10	1	154517301	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	2233244	154517301	94733320	8	7508											
THBS3	7059	hgsc.bcm.edu	37	1	155166922	155166922	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	155166922	A	T	155166922	3	4	120	1	0	0	0	0	1	0	0	0	15867	188	7	5	300	5	THBS3	1	155166922	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	649621	155166922	94083699	9	7509											
PIK3C2B	5287	hgsc.bcm.edu	37	1	204397328	204397328	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	204397328	G	C	204397328	3	2	120	1	0	0	0	0	1	0	0	0	11917	933	33	4	501	4	PIK3C2B	1	204397328	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	49230406	204397328	44853293	10	7510											
NUAK2	81788	hgsc.bcm.edu;ucsc.edu	37	1	205280933	205280933	+	Silent	SNP	C	C	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	205280933	C	A	205280933	2	1	120	1	0	0	0	0	0	0	0	1	10720	842	30	4		4	NUAK2	1	205280933	Silent	SNP	C	TCGA-B0-4824-01A-01D-1361-10	883605	205280933	43969688	11	7511											
KCNK2	3776	hgsc.bcm.edu	37	1	215259812	215259812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	215259812	A	T	215259812	3	4	120	1	0	0	0	0	1	0	0	0	8073	304	11	5	197	5	KCNK2	1	215259812	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	9978879	215259812	33990809	12	7512											
TGFB2	7042	hgsc.bcm.edu	37	1	218578652	218578652	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	218578652	A	T	218578652	3	4	120	1	0	0	0	0	1	0	0	0	15830	246	9	5	582	5	TGFB2	1	218578652	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	3318840	218578652	30671969	13	7513											
EPRS	2058	hgsc.bcm.edu	37	1	220174554	220174554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	220174554	G	T	220174554	3	4	120	1	0	0	0	0	1	0	0	0	5193	1174	41	4	2495	4	EPRS	1	220174554	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	1595902	220174554	29076067	14	7514											
OR2T29	343563	hgsc.bcm.edu	37	1	248722108	248722108	+	Missense_Mutation	SNP	C	C	T	rs1981236		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	248722108	C	T	248722108	3	4	120	1	0	0	0	0	1	0	0	0	11029	536	19	1	266	1	OR2T29	1	248722108	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10	28547554	248722108	528513	15	7515											
APOB	338	hgsc.bcm.edu;ucsc.edu	37	2	21234327	21234327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	21234327	C	A	21234327	3	1	120	1	0	0	0	0	1	0	0	0	785	710	25	4	8294	4	APOB	2	21234327	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10		21234327	221965046	16	7516											
SOS1	6654	hgsc.bcm.edu	37	2	39214679	39214679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	39214679	C	G	39214679	3	3	120	1	0	0	0	0	1	0	0	0	14949	478	17	4	564	4	SOS1	2	39214679	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10	17980352	39214679	203984694	17	7517											
SMEK2	57223	hgsc.bcm.edu	37	2	55804449	55804449	+	Splice_Site	SNP	A	A	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	55804449	A	T	55804449	5	4	120	1	0	0	0	0	0	0	1	0	14807	405	14	5	969	5	SMEK2	2	55804449	Splice_Site	SNP	A	TCGA-B0-4824-01A-01D-1361-10	16589770	55804449	187394924	18	7518											
USP34	9736	hgsc.bcm.edu	37	2	61571101	61571101	+	Silent	SNP	T	T	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	61571101	T	C	61571101	2	2	120	1	0	0	0	0	0	0	0	1	17077	1799	63	3		3	USP34	2	61571101	Silent	SNP	T	TCGA-B0-4824-01A-01D-1361-10	5766652	61571101	181628272	19	7519											
GFPT1	2673	hgsc.bcm.edu;ucsc.edu	37	2	69565625	69565625	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	69565625	T	G	69565625	3	3	120	1	0	0	0	0	1	0	0	0	6352	1841	64	5	851	5	GFPT1	2	69565625	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	7994524	69565625	173633748	20	7520											
DCTN1	1639	hgsc.bcm.edu	37	2	74605251	74605251	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	74605251	A	C	74605251	3	2	120	1	0	0	0	0	1	0	0	0	4308	14	1	5	3817	5	DCTN1	2	74605251	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	5039626	74605251	168594122	21	7521											
CTNNA2	1496	hgsc.bcm.edu;ucsc.edu	37	2	80101323	80101323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	80101323	C	T	80101323	3	4	120	1	0	0	0	0	1	0	0	0	4015	536	19	1	725	1	CTNNA2	2	80101323	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10	5496072	80101323	163098050	22	7522											
GLS	2744	hgsc.bcm.edu;ucsc.edu	37	2	191759912	191759912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	191759912	G	T	191759912	3	4	120	1	0	0	0	0	1	0	0	0	6470	942	33	4	427	4	GLS	2	191759912	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	111658589	191759912	51439461	23	7523											
C2orf60	0	hgsc.bcm.edu;ucsc.edu	37	2	200797973	200797973	+	Silent	SNP	A	A	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	200797973	A	G	200797973	2	3	120	1	0	0	0	0	0	0	0	1	2181	175	7	3		3	C2orf60	2	200797973	Silent	SNP	A	TCGA-B0-4824-01A-01D-1361-10	9038061	200797973	42401400	24	7524											
TOP2B	7155	hgsc.bcm.edu	37	3	25678779	25678779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	25678779	T	G	25678779	3	3	120	1	0	0	0	0	1	0	0	0	16378	1841	64	5	4438	5	TOP2B	3	25678779	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10		25678779	172343651	25	7525											
ARPP21	10777	hgsc.bcm.edu	37	3	35780926	35780926	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	35780926	C	T	35780926	4	4	120	1	0	0	0	0	0	1	0	0	978	595	21	2	1833	2	ARPP21	3	35780926	Nonsense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10	10102147	35780926	162241504	26	7526											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52682447	52682447	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	52682447	G	C	52682447	4	2	120	1	0	0	0	0	0	1	0	0	11498	1372	48	4	4270	4	PBRM1	3	52682447	Nonsense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	16901521	52682447	145339983	27	7527											
KLF15	28999	hgsc.bcm.edu	37	3	126070874	126070874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	126070874	G	T	126070874	3	4	120	1	0	0	0	0	1	0	0	0	8350	1203	42	4	366	4	KLF15	3	126070874	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	73388427	126070874	71951556	28	7528											
ARMC8	25852	hgsc.bcm.edu	37	3	138014726	138014726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	138014726	C	A	138014726	3	1	120	1	0	0	0	0	1	0	0	0	957	680	24	4	2124	4	ARMC8	3	138014726	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10	11943852	138014726	60007704	29	7529											
SLC33A1	9197	hgsc.bcm.edu;ucsc.edu	37	3	155547678	155547678	+	Silent	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	155547678	G	A	155547678	2	1	120	1	0	0	0	0	0	0	0	1	14579	1310	46	2		2	SLC33A1	3	155547678	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10	17532952	155547678	42474752	30	7530											
PIK3CA	5290	hgsc.bcm.edu;ucsc.edu	37	3	178916827	178916827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	178916827	A	G	178916827	3	3	120	1	0	0	0	0	1	0	0	0	11920	72	3	3	216	3	PIK3CA	3	178916827	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	23369149	178916827	19105603	31	7531											
MUC4	4585	hgsc.bcm.edu	37	3	195509443	195509443	+	Missense_Mutation	SNP	A	A	G	rs74585045		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	195509443	A	G	195509443	3	3	120	1	0	0	0	0	1	0	0	0	9985	449	16	3		3	MUC4	3	195509443	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	16592616	195509443	2512987	32	7532											
SEL1L3	23231	hgsc.bcm.edu;ucsc.edu	37	4	25834645	25834645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	25834645	C	T	25834645	3	4	120	1	0	0	0	0	1	0	0	0	14025	884	31	1	2408	1	SEL1L3	4	25834645	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10		25834645	165319631	33	7533											
GABRB1	2560	hgsc.bcm.edu;ucsc.edu	37	4	47033727	47033727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	47033727	C	G	47033727	3	3	120	1	0	0	0	0	1	0	0	0	6173	507	18	4	61	4	GABRB1	4	47033727	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10	21199082	47033727	144120549	34	7534											
PCDH10	57575	hgsc.bcm.edu	37	4	134071622	134071622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	134071622	G	T	134071622	3	4	120	1	0	0	0	0	1	0	0	0	11514	933	33	4	329	4	PCDH10	4	134071622	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	87037895	134071622	57082654	35	7535											
NPY1R	4886	hgsc.bcm.edu	37	4	164247020	164247020	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	164247020	A	C	164247020	3	2	120	1	0	0	0	0	1	0	0	0	10615	10	1	5	475	5	NPY1R	4	164247020	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	30175398	164247020	26907256	36	7536											
TKTL2	84076	hgsc.bcm.edu;ucsc.edu	37	4	164394547	164394547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	164394547	G	T	164394547	3	4	120	1	0	0	0	0	1	0	0	0	15948	1232	43	4	1544	4	TKTL2	4	164394547	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	147527	164394547	26759729	37	7537											
MYO10	4651	hgsc.bcm.edu	37	5	16668521	16668521	+	Silent	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	16668521	G	T	16668521	2	4	120	1	0	0	0	0	0	0	0	1	10069	929	33	4		4	MYO10	5	16668521	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10		16668521	164246739	38	7538											
MCCC2	64087	hgsc.bcm.edu	37	5	70922483	70922483	+	Missense_Mutation	SNP	G	G	A	rs277995	alternate_allele	TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	70922483	G	A	70922483	3	1	120	1	0	0	0	0	1	0	0	0	9382	1203	42	2	667	2	MCCC2	5	70922483	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	54253962	70922483	109992777	39	7539											
MAP1B	4131	hgsc.bcm.edu	37	5	71492078	71492078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	71492078	G	A	71492078	3	1	120	1	0	0	0	0	1	0	0	0	9235	1087	38	1	2914	1	MAP1B	5	71492078	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	569595	71492078	109423182	40	7540											
GPR98	84059	hgsc.bcm.edu;ucsc.edu	37	5	89989909	89989909	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	89989909	G	C	89989909	3	2	120	1	0	0	0	0	1	0	0	0	6728	1175	41	4	7466	4	GPR98	5	89989909	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	18497831	89989909	90925351	41	7541											
SEC24A	10802	hgsc.bcm.edu;ucsc.edu	37	5	134033690	134033690	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	134033690	A	T	134033690	4	4	120	1	0	0	0	0	0	1	0	0	14007	296	11	5	2267	5	SEC24A	5	134033690	Nonsense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	44043781	134033690	46881570	42	7542											
KIAA0319	9856	hgsc.bcm.edu	37	6	24596606	24596606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	24596606	T	C	24596606	3	2	120	1	0	0	0	0	1	0	0	0	8175	1406	49	3	2998	3	KIAA0319	6	24596606	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10		24596606	146518461	43	7543											
SYNGAP1	8831	hgsc.bcm.edu;ucsc.edu	37	6	33408632	33408632	+	Silent	SNP	G	G	A	rs77934848	byfrequency;by1000genomes	TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	33408632	G	A	33408632	2	1	120	1	0	0	0	0	0	0	0	1	15459	1045	37	1		1	SYNGAP1	6	33408632	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10	8812026	33408632	137706435	44	7544											
FRS3	10817	hgsc.bcm.edu	37	6	41740607	41740607	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	41740607	T	A	41740607	3	1	120	1	0	0	0	0	1	0	0	0	6069	1551	54	5	1146	5	FRS3	6	41740607	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	8331975	41740607	129374460	45	7545											
TAF8	129685	hgsc.bcm.edu;ucsc.edu	37	6	42044898	42044898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	42044898	G	T	42044898	3	4	120	1	0	0	0	0	1	0	0	0	15546	1232	43	4	871	4	TAF8	6	42044898	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	304291	42044898	129070169	46	7546											
MEP1A	4224	hgsc.bcm.edu	37	6	46787323	46787323	+	Silent	SNP	A	A	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	46787323	A	G	46787323	2	3	120	1	0	0	0	0	0	0	0	1	9482	320	12	3		3	MEP1A	6	46787323	Silent	SNP	A	TCGA-B0-4824-01A-01D-1361-10	4742425	46787323	124327744	47	7547											
CARD11	84433	hgsc.bcm.edu	37	7	2949760	2949760	+	Silent	SNP	T	T	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	2949760	T	G	2949760	2	3	120	1	0	0	0	0	0	0	0	1	2647	1617	56	5		5	CARD11	7	2949760	Silent	SNP	T	TCGA-B0-4824-01A-01D-1361-10		2949760	156188903	48	7548											
WBSCR17	64409	hgsc.bcm.edu	37	7	71130461	71130461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	71130461	G	T	71130461	3	4	120	1	0	0	0	0	1	0	0	0	17276	933	33	4	1172	4	WBSCR17	7	71130461	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	68180701	71130461	88008202	49	7549											
POM121C	100101267	hgsc.bcm.edu	37	7	75055733	75055733	+	Silent	SNP	G	G	C	rs2429596		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	75055733	G	C	75055733	2	2	120	1	0	0	0	0	0	0	0	1	12247	929	33	4		4	POM121C	7	75055733	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10	3925272	75055733	84082930	50	7550											
AASS	10157	hgsc.bcm.edu	37	7	121721615	121721615	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	121721615	A	T	121721615	4	4	120	1	0	0	0	0	0	1	0	0	24	372	13	5	581	5	AASS	7	121721615	Nonsense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	46665882	121721615	37417048	51	7551											
ZMAT4	79698	hgsc.bcm.edu	37	8	40683123	40683123	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	40683123	A	C	40683123	3	2	120	1	0	0	0	0	1	0	0	0	17706	304	11	5	640	5	ZMAT4	8	40683123	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10		40683123	105680899	52	7552											
CHRNA6	8973	hgsc.bcm.edu	37	8	42611309	42611309	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	42611309	A	C	42611309	3	2	120	1	0	0	0	0	1	0	0	0	3389	14	1	5	459	5	CHRNA6	8	42611309	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	1928186	42611309	103752713	53	7553											
SLCO5A1	81796	hgsc.bcm.edu	37	8	70744113	70744113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	70744113	A	C	70744113	3	2	120	1	0	0	0	0	1	0	0	0	14744	11	1	5	1786	5	SLCO5A1	8	70744113	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	28132804	70744113	75619909	54	7554											
PKHD1L1	93035	hgsc.bcm.edu;ucsc.edu	37	8	110447494	110447494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	110447494	G	A	110447494	3	1	120	1	0	0	0	0	1	0	0	0	11979	1174	41	2	3530	2	PKHD1L1	8	110447494	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	39703381	110447494	35916528	55	7555											
KHDRBS3	10656	hgsc.bcm.edu;ucsc.edu	37	8	136533552	136533552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	136533552	T	C	136533552	3	2	120	1	0	0	0	0	1	0	0	0	8155	1464	51	3	167	3	KHDRBS3	8	136533552	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	26086058	136533552	9830470	56	7556											
UBAP2	55833	hgsc.bcm.edu	37	9	33986813	33986813	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	33986813	A	C	33986813	3	2	120	1	0	0	0	0	1	0	0	0	16849	126	5	5	2990	5	UBAP2	9	33986813	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10		33986813	107226618	57	7557											
ZNF618	114991	hgsc.bcm.edu	37	9	116810945	116810945	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	116810945	T	G	116810945	3	3	120	1	0	0	0	0	1	0	0	0	18054	1838	64	5	1138	5	ZNF618	9	116810945	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	82824132	116810945	24402486	58	7558											
COL5A1	1289	hgsc.bcm.edu	37	9	137717654	137717654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	137717654	T	A	137717654	3	1	120	1	0	0	0	0	1	0	0	0	3698	1432	50	5	5221	5	COL5A1	9	137717654	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	20906709	137717654	3495777	59	7559											
AKR1E2	83592	hgsc.bcm.edu;ucsc.edu	37	10	4873024	4873024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	4873024	T	C	4873024	3	2	120	1	0	0	0	0	1	0	0	0	474	1493	52	3	203	3	AKR1E2	10	4873024	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10		4873024	130661723	60	7560											
CACNB2	783	hgsc.bcm.edu	37	10	18629864	18629864	+	Silent	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	18629864	C	T	18629864	2	4	120	1	0	0	0	0	0	0	0	1	2555	477	17	2		2	CACNB2	10	18629864	Silent	SNP	C	TCGA-B0-4824-01A-01D-1361-10	13756840	18629864	116904883	61	7561											
MYO3A	53904	hgsc.bcm.edu;ucsc.edu	37	10	26491897	26491897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	26491897	G	C	26491897	3	2	120	1	0	0	0	0	1	0	0	0	10083	1233	43	4	4717	4	MYO3A	10	26491897	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	7862033	26491897	109042850	62	7562											
KIF5B	3799	hgsc.bcm.edu;ucsc.edu	37	10	32304512	32304512	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	32304512	A	C	32304512	3	2	120	1	0	0	0	0	1	0	0	0	8313	14	1	5	58	5	KIF5B	10	32304512	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	5812615	32304512	103230235	63	7563											
ARHGAP19	84986	hgsc.bcm.edu;ucsc.edu	37	10	99025627	99025628	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	-	99025628	GA	-	99025627	7	5	120	1	0	1	0	1	0	0	0	0	869	1277	45	0	1216	0	ARHGAP19	10	99025627	Frame_Shift_Del	DEL	GA	TCGA-B0-4824-01A-01D-1361-10	66721115	99025627	36509120	64	7564											
USH1C	10083	hgsc.bcm.edu;ucsc.edu	37	11	17544782	17544782	+	Silent	SNP	C	C	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	17544782	C	A	17544782	2	1	120	1	0	0	0	0	0	0	0	1	17046	813	29	4		4	USH1C	11	17544782	Silent	SNP	C	TCGA-B0-4824-01A-01D-1361-10		17544782	117461734	65	7565											
KCNK4	50801	hgsc.bcm.edu	37	11	64065101	64065101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	64065101	G	T	64065101	3	4	120	1	0	0	0	0	1	0	0	0	8075	1145	40	4	651	4	KCNK4	11	64065101	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	46520319	64065101	70941415	66	7566											
FCHSD2	9873	hgsc.bcm.edu	37	11	72600920	72600920	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	72600920	G	C	72600920	3	2	120	1	0	0	0	0	1	0	0	0	5797	1203	42	4	1267	4	FCHSD2	11	72600920	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	8535819	72600920	62405596	67	7567											
GRAMD1B	57476	hgsc.bcm.edu	37	11	123477468	123477468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	123477468	C	A	123477468	3	1	120	1	0	0	0	0	1	0	0	0	6755	623	22	4	1084	4	GRAMD1B	11	123477468	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10	50876548	123477468	11529048	68	7568											
CHD4	1108	hgsc.bcm.edu;ucsc.edu	37	12	6692033	6692033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	6692033	C	T	6692033	3	4	120	1	0	0	0	0	1	0	0	0	3329	536	19	1	1573	1	CHD4	12	6692033	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10		6692033	127159862	69	7569											
PRB1	5542	hgsc.bcm.edu	37	12	11506669	11506669	+	Missense_Mutation	SNP	G	G	T	rs74903687	bycluster;byfrequency;by1000genomes	TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	11506669	G	T	11506669	3	4	120	1	0	0	0	0	1	0	0	0	12452	1348	47	4	631	4	PRB1	12	11506669	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	4814636	11506669	122345226	70	7570											
UBE3B	89910	hgsc.bcm.edu;ucsc.edu	37	12	109961798	109961798	+	Missense_Mutation	SNP	G	G	A	rs150941198		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	109961798	G	A	109961798	3	1	120	1	0	0	0	0	1	0	0	0	16892	1145	40	1	2458	1	UBE3B	12	109961798	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	98455129	109961798	23890097	71	7571											
RNF17	56163	hgsc.bcm.edu	37	13	25367296	25367296	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	25367296	C	G	25367296	3	3	120	1	0	0	0	0	1	0	0	0	13474	913	32	4	1090	4	RNF17	13	25367296	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10		25367296	89802582	72	7572											
SMAD9	4093	hgsc.bcm.edu	37	13	37422885	37422885	+	Silent	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	37422885	C	T	37422885	2	4	120	1	0	0	0	0	0	0	0	1	14777	726	26	2		2	SMAD9	13	37422885	Silent	SNP	C	TCGA-B0-4824-01A-01D-1361-10	12055589	37422885	77746993	73	7573											
PCNX	22990	hgsc.bcm.edu;ucsc.edu	37	14	71443721	71443721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	71443721	C	T	71443721	3	4	120	1	0	0	0	0	1	0	0	0	11598	739	26	2	689	2	PCNX	14	71443721	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10		71443721	35905819	74	7574											
KIAA1737	85457	hgsc.bcm.edu	37	14	77580149	77580149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	77580149	G	T	77580149	3	4	120	1	0	0	0	0	1	0	0	0	8262	1232	43	4	698	4	KIAA1737	14	77580149	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	6136428	77580149	29769391	75	7575											
AHSA1	10598	hgsc.bcm.edu;ucsc.edu	37	14	77935550	77935550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	77935550	G	T	77935550	3	4	120	1	0	0	0	0	1	0	0	0	418	991	35	4	1009	4	AHSA1	14	77935550	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	355401	77935550	29413990	76	7576											
TDP1	55775	hgsc.bcm.edu;ucsc.edu	37	14	90459807	90459807	+	Silent	SNP	T	T	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	90459807	T	C	90459807	2	2	120	1	0	0	0	0	0	0	0	1	15740	1800	63	3		3	TDP1	14	90459807	Silent	SNP	T	TCGA-B0-4824-01A-01D-1361-10	12524257	90459807	16889733	77	7577											
AQR	9716	hgsc.bcm.edu	37	15	35196655	35196655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	35196655	A	G	35196655	3	3	120	1	0	0	0	0	1	0	0	0	835	14	1	3	2642	3	AQR	15	35196655	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10		35196655	67334737	78	7578											
TGM5	9333	hgsc.bcm.edu	37	15	43525886	43525886	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	43525886	C	A	43525886	5	1	120	1	0	0	0	0	0	0	1	0	15845	695	24	4	295	4	TGM5	15	43525886	Splice_Site	SNP	C	TCGA-B0-4824-01A-01D-1361-10	8329231	43525886	59005506	79	7579											
TP53BP1	7158	hgsc.bcm.edu	37	15	43714119	43714119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	43714119	T	C	43714119	3	2	120	1	0	0	0	0	1	0	0	0	16395	1841	64	3	1939	3	TP53BP1	15	43714119	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	188233	43714119	58817273	80	7580											
CHRNB4	1143	hgsc.bcm.edu	37	15	78921843	78921843	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	78921843	G	C	78921843	3	2	120	1	0	0	0	0	1	0	0	0	3395	932	33	4	700	4	CHRNB4	15	78921843	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	35207724	78921843	23609549	81	7581											
ANPEP	290	hgsc.bcm.edu	37	15	90347747	90347747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	90347747	G	T	90347747	3	4	120	1	0	0	0	0	1	0	0	0	710	1368	48	4	1972	4	ANPEP	15	90347747	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	11425904	90347747	12183645	82	7582											
ATPAF2	91647	hgsc.bcm.edu	37	17	17929671	17929671	+	Silent	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	17929671	G	T	17929671	2	4	120	1	0	0	0	0	0	0	0	1	1201	1164	41	4		4	ATPAF2	17	17929671	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10		17929671	63265539	83	7583											
EPN2	22905	hgsc.bcm.edu	37	17	19232882	19232882	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	19232882	G	T	19232882	4	4	120	1	0	0	0	0	0	1	0	0	5188	1291	45	4	1359	4	EPN2	17	19232882	Nonsense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	1303211	19232882	61962328	84	7584											
ATAD5	79915	hgsc.bcm.edu	37	17	29161255	29161255	+	Silent	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	29161255	G	A	29161255	2	1	120	1	0	0	0	0	0	0	0	1	1076	1223	43	2		2	ATAD5	17	29161255	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10	9928373	29161255	52033955	85	7585											
BRCA1	672	hgsc.bcm.edu	37	17	41246254	41246254	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	41246254	G	C	41246254	3	2	120	1	0	0	0	0	1	0	0	0	1500	1020	36	4	4423	4	BRCA1	17	41246254	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	12084999	41246254	39948956	86	7586											
TBX4	9496	hgsc.bcm.edu	37	17	59560732	59560732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	59560732	C	T	59560732	3	4	120	1	0	0	0	0	1	0	0	0	15672	623	22	2	1523	2	TBX4	17	59560732	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10	18314478	59560732	21634478	87	7587											
PSMC5	5705	hgsc.bcm.edu	37	17	61906877	61906877	+	Silent	SNP	A	A	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	61906877	A	G	61906877	2	3	120	1	0	0	0	0	0	0	0	1	12700	11	1	3		3	PSMC5	17	61906877	Silent	SNP	A	TCGA-B0-4824-01A-01D-1361-10	2346145	61906877	19288333	88	7588											
ABCA5	23461	hgsc.bcm.edu;ucsc.edu	37	17	67243707	67243707	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	67243707	G	A	67243707	4	1	120	1	0	0	0	0	0	1	0	0	35	1153	40	1	32	1	ABCA5	17	67243707	Nonsense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	5336830	67243707	13951503	89	7589											
CLUL1	27098	hgsc.bcm.edu	37	18	644931	644931	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	644931	G	C	644931	3	2	120	1	0	0	0	0	1	0	0	0	3572	1001	35	4	1257	4	CLUL1	18	644931	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10		644931	77432317	90	7590											
C18orf10	0	hgsc.bcm.edu	37	18	34376768	34376768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	34376768	T	C	34376768	3	2	120	1	0	0	0	0	1	0	0	0	1897	1564	54	3	3	3	C18orf10	18	34376768	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	33731837	34376768	43700480	91	7591											
SLC14A2	8170	hgsc.bcm.edu	37	18	43258985	43258985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	43258985	C	G	43258985	3	3	120	1	0	0	0	0	1	0	0	0	14410	913	32	4	2628	4	SLC14A2	18	43258985	Missense_Mutation	SNP	C	TCGA-B0-4824-01A-01D-1361-10	8882217	43258985	34818263	92	7592											
ARID3A	1820	hgsc.bcm.edu	37	19	964302	964302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	964302	T	C	964302	3	2	120	1	0	0	0	0	1	0	0	0	916	1464	51	3	835	3	ARID3A	19	964302	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10		964302	58164681	93	7593											
ZNF98	148198	hgsc.bcm.edu	37	19	22574818	22574818	+	Missense_Mutation	SNP	T	T	C	rs78213198	byfrequency	TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	C	22574818	T	C	22574818	3	2	120	1	0	0	0	0	1	0	0	0	18215	1821	63	3	503	3	ZNF98	19	22574818	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	21610516	22574818	36554165	94	7594											
WDR88	126248	hgsc.bcm.edu;ucsc.edu	37	19	33663257	33663257	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	33663257	A	T	33663257	3	4	120	1	0	0	0	0	1	0	0	0	17347	411	15	5	1191	5	WDR88	19	33663257	Missense_Mutation	SNP	A	TCGA-B0-4824-01A-01D-1361-10	11088439	33663257	25465726	95	7595											
PRR12	57479	hgsc.bcm.edu	37	19	50117833	50117833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	50117833	T	G	50117833	3	3	120	1	0	0	0	0	1	0	0	0	12594	1667	58	5	4843	5	PRR12	19	50117833	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	16454576	50117833	9011150	96	7596											
KLK6	5653	hgsc.bcm.edu;ucsc.edu	37	19	51462555	51462555	+	Silent	SNP	C	C	T	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	T	51462555	C	T	51462555	2	4	120	1	0	0	0	0	0	0	0	1	8415	755	27	1		1	KLK6	19	51462555	Silent	SNP	C	TCGA-B0-4824-01A-01D-1361-10	1344722	51462555	7666428	97	7597											
ZNF587	84914	hgsc.bcm.edu;ucsc.edu	37	19	58370766	58370766	+	Missense_Mutation	SNP	G	G	A	rs77577775	bycluster;byfrequency	TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	58370766	G	A	58370766	3	1	120	1	0	0	0	0	1	0	0	0	18032	1377	48	2	996	2	ZNF587	19	58370766	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	6908211	58370766	758217	98	7598											
PLCB4	5332	hgsc.bcm.edu	37	20	9288474	9288474	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	9288474	T	A	9288474	3	1	120	1	0	0	0	0	1	0	0	0	12037	1754	61	5	15	5	PLCB4	20	9288474	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10		9288474	53737046	99	7599											
ZNFX1	57169	hgsc.bcm.edu	37	20	47865261	47865261	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	47865261	T	G	47865261	3	3	120	1	0	0	0	0	1	0	0	0	18217	1850	64	5	1460	5	ZNFX1	20	47865261	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	38576787	47865261	15160259	100	7600											
KRTAP13-3	337960	hgsc.bcm.edu	37	21	31797889	31797889	+	Silent	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	31797889	G	A	31797889	2	1	120	1	0	0	0	0	0	0	0	1	8531	1335	47	2		2	KRTAP13-3	21	31797889	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10		31797889	16332006	101	7601											
TUBGCP6	85378	hgsc.bcm.edu;ucsc.edu	37	22	50664352	50664352	+	Silent	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	50664352	G	A	50664352	2	1	120	1	0	0	0	0	0	0	0	1	16782	1136	40	1		1	TUBGCP6	22	50664352	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10		50664352	640214	102	7602											
CSF2RA	1438	hgsc.bcm.edu	37	X	1409284	1409284	+	Silent	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	1409284	G	A	1409284	2	1	120	1	0	0	0	0	0	0	0	1	3936	1335	47	2		2	CSF2RA	23	1409284	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10		1409284	153861276	103	7603											
CXorf65	158830	hgsc.bcm.edu;ucsc.edu	37	X	70326251	70326251	+	Silent	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	70326251	G	A	70326251	2	1	120	1	0	0	0	0	0	0	0	1	4119	1335	47	2		2	CXorf65	23	70326251	Silent	SNP	G	TCGA-B0-4824-01A-01D-1361-10	68916967	70326251	84944309	104	7604											
ZMYM3	9203	hgsc.bcm.edu	37	X	70469018	70469018	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	G	70469018	T	G	70469018	3	3	120	1	0	0	0	0	1	0	0	0	17713	1855	64	5	2712	5	ZMYM3	23	70469018	Missense_Mutation	SNP	T	TCGA-B0-4824-01A-01D-1361-10	142767	70469018	84801542	105	7605											
ODZ1	0	hgsc.bcm.edu	37	X	123519821	123519821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4824-01A-01D-1361-10	TCGA-B0-4824-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0f5a1bd-2c51-4f33-b9c3-c9cb4811904c	f36b4f93-3673-4b9e-9bdf-284cf01a05f2	A	123519821	G	A	123519821	3	1	120	1	0	0	0	0	1	0	0	0	10841	1087	38	1	2432	1	ODZ1	23	123519821	Missense_Mutation	SNP	G	TCGA-B0-4824-01A-01D-1361-10	53050803	123519821	31750739	106	7606											
VHL	7428	hgsc.bcm.edu	37	3	10183725	10183725	+	Nonsense_Mutation	SNP	C	C	A	rs5030826		TCGA-B0-4824-01A-01W-1359-10	TCGA-B0-4824-11A-01D-2279-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	7161a7de-b571-4937-a5a9-d869dd975912	52b4edfa-cd2c-4197-ad0c-be9c465f7f35	A	10183725	C	A	10183725	4	1	121	1	0	0	0	0	0	1	0	0	17174	893	31	4	196	4	VHL	3	10183725	Nonsense_Mutation	SNP	C	TCGA-B0-4824-01A-01W-1359-10		10183725	187838705	1	7607											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11188164	11188164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	11188164	G	T	11188164	3	4	122	1	0	0	0	0	1	0	0	0	9961	1377	48	4	1783	4	MTOR	1	11188164	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08		11188164	238062457	1	7608											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16259441	16259441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	16259441	C	T	16259441	3	4	122	1	0	0	0	0	1	0	0	0	15050	507	18	2	6748	2	SPEN	1	16259441	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	5071277	16259441	232991180	2	7609											
KIAA0467	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43905719	43905719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	43905719	G	A	43905719	3	1	122	1	0	0	0	0	1	0	0	0	8185	1014	35	2	4647	2	KIAA0467	1	43905719	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	27646278	43905719	205344902	3	7610											
PRUNE	58497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151001376	151001376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	151001376	C	T	151001376	3	4	122	1	0	0	0	0	1	0	0	0	12650	759	27	1	915	1	PRUNE	1	151001376	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	107095657	151001376	98249245	4	7611											
TDRKH	11022	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151751219	151751219	+	Silent	SNP	A	A	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	151751219	A	G	151751219	2	3	122	1	0	0	0	0	0	0	0	1	15749	156	6	3		3	TDRKH	1	151751219	Silent	SNP	A	TCGA-B0-4827-01A-02D-1421-08	749843	151751219	97499402	5	7612											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186136027	186136027	+	Missense_Mutation	SNP	G	G	A	rs150494959	byfrequency	TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	186136027	G	A	186136027	3	1	122	1	0	0	0	0	1	0	0	0	7227	1145	40	1	15925	1	HMCN1	1	186136027	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	34384808	186136027	63114594	6	7613											
KIDINS220	57498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	8919170	8919170	+	Silent	SNP	G	G	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	8919170	G	T	8919170	2	4	122	1	0	0	0	0	0	0	0	1	8278	1057	37	4		4	KIDINS220	2	8919170	Silent	SNP	G	TCGA-B0-4827-01A-02D-1421-08		8919170	234280203	7	7614											
ASXL2	55252	broad.mit.edu;hgsc.bcm.edu	37	2	26029201	26029201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	26029201	G	A	26029201	3	1	122	1	0	0	0	0	1	0	0	0	1067	1029	36	2	4198	2	ASXL2	2	26029201	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	17110031	26029201	217170172	8	7615											
NFU1	27247	hgsc.bcm.edu;ucsc.edu	37	2	69650750	69650751	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	69650751	-	T	69650750	7	5	122	1	0	1	1	0	0	0	0	0	10393	1232	43	0	522	0	NFU1	2	69650750	Frame_Shift_Ins	INS	-	TCGA-B0-4827-01A-02D-1421-08	43621549	69650750	173548623	9	7616											
SCN2A	6326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	166183424	166183424	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	166183424	T	G	166183424	3	3	122	1	0	0	0	0	1	0	0	0	13929	1490	52	5	2221	5	SCN2A	2	166183424	Missense_Mutation	SNP	T	TCGA-B0-4827-01A-02D-1421-08	96532674	166183424	77015949	10	7617											
ZDBF2	57683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	207170060	207170060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	207170060	G	T	207170060	3	4	122	1	0	0	0	0	1	0	0	0	17611	1261	44	4	818	4	ZDBF2	2	207170060	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	40986636	207170060	36029313	11	7618											
MSL3L2	0	broad.mit.edu;ucsc.edu	37	2	234775439	234775439	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	234775439	A	A	234775439	3	1	122	1	0	0	0	0	1	0	0	0	9887	1638	57	5	671	5	MSL3L2	2	234775439	Missense_Mutation	SNP	T	TCGA-B0-4827-01A-02D-1421-08	27605379	234775439	8423934	12	7619											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191479	10191479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	10191479	C	G	10191479	3	3	122	1	0	0	0	0	1	0	0	0	17174	912	32	4	482	4	VHL	3	10191479	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08		10191479	187830951	13	7620											
CCDC51	79714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48474087	48474087	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	48474087	G	C	48474087	3	2	122	1	0	0	0	0	1	0	0	0	2823	1328	46	4	272	4	CCDC51	3	48474087	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	38282608	48474087	149548343	14	7621	80	2									
CCDC51	79714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48474088	48474088	+	Silent	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	48474088	C	T	48474088	2	4	122	1	0	0	0	0	0	0	0	1	2823	796	28	2		2	CCDC51	3	48474088	Silent	SNP	C	TCGA-B0-4827-01A-02D-1421-08	1	48474088	149548342	15	7622	80	2									
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52439864	52439864	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	-	52439864	T	-	52439864	7	5	122	1	0	1	0	1	0	0	0	0	1311	1551	54	0	1373	0	BAP1	3	52439864	Frame_Shift_Del	DEL	T	TCGA-B0-4827-01A-02D-1421-08	3965776	52439864	145582566	16	7623											
CACNA1D	776	broad.mit.edu;hgsc.bcm.edu	37	3	53845422	53845422	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	53845422	A	T	53845422	3	4	122	1	0	0	0	0	1	0	0	0	2543	159	6	5	6837	5	CACNA1D	3	53845422	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	1405558	53845422	144177008	17	7624											
SLC7A14	57709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	170185029	170185029	+	Silent	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	170185029	G	A	170185029	2	1	122	1	0	0	0	0	0	0	0	1	14709	1140	40	1		1	SLC7A14	3	170185029	Silent	SNP	G	TCGA-B0-4827-01A-02D-1421-08	116339607	170185029	27837401	18	7625											
VPS8	23355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184689536	184689536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	184689536	G	A	184689536	3	1	122	1	0	0	0	0	1	0	0	0	17230	1145	40	1	3566	1	VPS8	3	184689536	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	14504507	184689536	13332894	19	7626											
NDST4	64579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	115769372	115769372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	115769372	A	C	115769372	3	2	122	1	0	0	0	0	1	0	0	0	10265	202	7	5	703	5	NDST4	4	115769372	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08		115769372	75384904	20	7627											
TRIM2	23321	broad.mit.edu;hgsc.bcm.edu	37	4	154216562	154216562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	154216562	C	A	154216562	3	1	122	1	0	0	0	0	1	0	0	0	16506	507	18	4	906	4	TRIM2	4	154216562	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	38447190	154216562	36937714	21	7628											
SNX25	83891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	186188308	186188308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	186188308	A	T	186188308	3	4	122	1	0	0	0	0	1	0	0	0	14909	86	3	5	612	5	SNX25	4	186188308	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	31971746	186188308	4965968	22	7629											
CCDC125	202243	hgsc.bcm.edu;ucsc.edu	37	5	68607025	68607025	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	-	68607025	C	-	68607025	7	5	122	1	0	1	0	1	0	0	0	0	2763	922	32	0	1198	0	CCDC125	5	68607025	Frame_Shift_Del	DEL	C	TCGA-B0-4827-01A-02D-1421-08		68607025	112308235	23	7630											
FCHO2	115548	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	72333026	72333026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	72333026	A	G	72333026	3	3	122	1	0	0	0	0	1	0	0	0	5795	15	1	3	936	3	FCHO2	5	72333026	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	3726001	72333026	108582234	24	7631											
MDN1	23195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90388338	90388338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	90388338	A	C	90388338	3	2	122	1	0	0	0	0	1	0	0	0	9422	14	1	5	4510	5	MDN1	6	90388338	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08		90388338	80726729	25	7632											
ROS1	6098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	117677884	117677884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	117677884	G	T	117677884	3	4	122	1	0	0	0	0	1	0	0	0	13544	1348	47	4	3070	4	ROS1	6	117677884	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	27289546	117677884	53437183	26	7633											
CARD11	84433	broad.mit.edu;ucsc.edu	37	7	2946320	2946320	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	2946320	C	C	2946320	3	2	122	1	0	0	0	0	1	0	0	0	2647	1048	37	4	51	4	CARD11	7	2946320	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08		2946320	156192343	27	7634											
PHF14	9678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	11078422	11078422	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	11078422	T	G	11078422	3	3	122	1	0	0	0	0	1	0	0	0	11832	1461	51	5	2058	5	PHF14	7	11078422	Missense_Mutation	SNP	T	TCGA-B0-4827-01A-02D-1421-08	8132102	11078422	148060241	28	7635											
C7orf63	79846	hgsc.bcm.edu;ucsc.edu	37	7	89891285	89891285	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	-	89891285	T	-	89891285	7	5	122	1	0	1	0	1	0	0	0	0	2411	1493	52	0	285	0	C7orf63	7	89891285	Frame_Shift_Del	DEL	T	TCGA-B0-4827-01A-02D-1421-08	78812863	89891285	69247378	29	7636											
AKAP9	10142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	91668040	91668040	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	91668040	C	G	91668040	4	3	122	1	0	0	0	0	0	1	0	0	459	838	29	4	4712	4	AKAP9	7	91668040	Nonsense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	1776755	91668040	67470623	30	7637											
C7orf58	0	broad.mit.edu;hgsc.bcm.edu	37	7	120911339	120911339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	120911339	G	A	120911339	3	1	122	1	0	0	0	0	1	0	0	0	2407	1043	36	2	2851	2	C7orf58	7	120911339	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	29243299	120911339	38227324	31	7638											
EPHB6	2051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	142568043	142568043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	142568043	T	G	142568043	3	3	122	1	0	0	0	0	1	0	0	0	5180	1821	63	5	2738	5	EPHB6	7	142568043	Missense_Mutation	SNP	T	TCGA-B0-4827-01A-02D-1421-08	21656704	142568043	16570620	32	7639											
KCNB2	9312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	73848635	73848635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	73848635	T	C	73848635	3	2	122	1	0	0	0	0	1	0	0	0	8020	1493	52	3	1051	3	KCNB2	8	73848635	Missense_Mutation	SNP	T	TCGA-B0-4827-01A-02D-1421-08		73848635	72515387	33	7640											
RANBP6	26953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	6013437	6013437	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	6013437	T	G	6013437	3	3	122	1	0	0	0	0	1	0	0	0	13044	1464	51	5	1150	5	RANBP6	9	6013437	Missense_Mutation	SNP	T	TCGA-B0-4827-01A-02D-1421-08		6013437	135199994	34	7641											
FANCG	2189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35078167	35078167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	35078167	A	T	35078167	3	4	122	1	0	0	0	0	1	0	0	0	5675	69	3	5	1431	5	FANCG	9	35078167	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	29064730	35078167	106135264	35	7642											
RNF38	152006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	36376116	36376116	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	36376116	A	T	36376116	3	4	122	1	0	0	0	0	1	0	0	0	13503	446	16	5	1416	5	RNF38	9	36376116	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	1297949	36376116	104837315	36	7643											
TMOD1	7111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	100286582	100286582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	100286582	G	A	100286582	3	1	122	1	0	0	0	0	1	0	0	0	16245	1174	41	2	114	2	TMOD1	9	100286582	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	63910466	100286582	40926849	37	7644											
GOLGA1	2800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	127690521	127690521	+	Silent	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	127690521	G	A	127690521	2	1	122	1	0	0	0	0	0	0	0	1	6558	1335	47	2		2	GOLGA1	9	127690521	Silent	SNP	G	TCGA-B0-4827-01A-02D-1421-08	27403939	127690521	13522910	38	7645											
LCN1	3933	broad.mit.edu	37	9	138416709	138416709	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	138416709	G	G	138416709	3	3	122	1	0	0	0	0	1	0	0	0	8687	304	11	3	455	3	LCN1	9	138416709	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	10726188	138416709	2796722	39	7646											
BTAF1	9044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	93768666	93768666	+	Silent	SNP	T	T	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	93768666	T	G	93768666	2	3	122	1	0	0	0	0	0	0	0	1	1538	1596	56	5		5	BTAF1	10	93768666	Silent	SNP	T	TCGA-B0-4827-01A-02D-1421-08		93768666	41766081	40	7647											
ACTR1A	10121	hgsc.bcm.edu	37	10	104248835	104248859	+	Frame_Shift_Del	DEL	AATGAAGATGTCGCCTTCAAGGGCT	AATGAAGATGTCGCCTTCAAGGGCT	-	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	AATGAAGATGTCGCCTTCAAGGGCT	AATGAAGATGTCGCCTTCAAGGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	-	104248859	AATGAAGATGTCGCCTTCAAGGGCT	-	104248835	7	5	122	1	0	1	0	1	0	0	0	0	209	126	5	0	992	0	ACTR1A	10	104248835	Frame_Shift_Del	DEL	AATGAAGATGTCGCCTTCAAGGGCT	TCGA-B0-4827-01A-02D-1421-08	10480169	104248835	31285912	41	7648											
ABLIM1	3983	hgsc.bcm.edu	37	10	116417921	116417922	+	Frame_Shift_Ins	INS	-	-	AAAA	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	AAAA	116417922	-	AAAA	116417921	7	5	122	1	0	1	1	0	0	0	0	0	94	477	17	0	2473	0	ABLIM1	10	116417921	Frame_Shift_Ins	INS	-	TCGA-B0-4827-01A-02D-1421-08	12169086	116417921	19116826	42	7649											
CLRN3	119467	hgsc.bcm.edu;ucsc.edu	37	10	129676520	129676523	+	Frame_Shift_Del	DEL	TATT	TATT	-	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	TATT	TATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	-	129676523	TATT	-	129676520	7	5	122	1	0	1	0	1	0	0	0	0	3561	1406	49	0	110	0	CLRN3	10	129676520	Frame_Shift_Del	DEL	TATT	TCGA-B0-4827-01A-02D-1421-08	13258599	129676520	5858227	43	7650											
OR51T1	401665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4903629	4903629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	4903629	C	T	4903629	3	4	122	1	0	0	0	0	1	0	0	0	11113	565	20	2	583	2	OR51T1	11	4903629	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08		4903629	130102887	44	7651											
OR10A4	283297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6897950	6897950	+	Silent	SNP	T	T	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	6897950	T	G	6897950	2	3	122	1	0	0	0	0	0	0	0	1	10899	1770	62	5		5	OR10A4	11	6897950	Silent	SNP	T	TCGA-B0-4827-01A-02D-1421-08	1994321	6897950	128108566	45	7652											
C11orf41	0	broad.mit.edu;hgsc.bcm.edu	37	11	33566496	33566496	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	33566496	C	G	33566496	3	3	122	1	0	0	0	0	1	0	0	0	1642	478	17	4	2090	4	C11orf41	11	33566496	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	26668546	33566496	101440020	46	7653											
ABTB2	25841	hgsc.bcm.edu	37	11	34378374	34378374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	34378374	C	A	34378374	3	1	122	1	0	0	0	0	1	0	0	0	103	826	29	4	2388	4	ABTB2	11	34378374	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	811878	34378374	100628142	47	7654											
TNKS1BP1	85456	broad.mit.edu;ucsc.edu	37	11	57076184	57076184	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	57076184	T	T	57076184	3	4	122	1	0	0	0	0	1	0	0	0	16332	420	15	5	1212	5	TNKS1BP1	11	57076184	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	22697810	57076184	77930332	48	7655											
AAAS	8086	broad.mit.edu	37	12	53708552	53708552	+	Silent	SNP	A	T	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	53708552	T	T	53708552	2	4	122	1	0	0	0	0	0	0	0	1	8	146	6	5		5	AAAS	12	53708552	Silent	SNP	A	TCGA-B0-4827-01A-02D-1421-08		53708552	80143343	49	7656											
CD63	967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56121064	56121064	+	Silent	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	56121064	G	A	56121064	2	1	122	1	0	0	0	0	0	0	0	1	3031	1335	47	2		2	CD63	12	56121064	Silent	SNP	G	TCGA-B0-4827-01A-02D-1421-08	2412512	56121064	77730831	50	7657											
IRAK3	11213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	66638963	66638963	+	Missense_Mutation	SNP	G	G	A	rs146885838		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	66638963	G	A	66638963	3	1	122	1	0	0	0	0	1	0	0	0	7831	1116	39	1	1277	1	IRAK3	12	66638963	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	10517899	66638963	67212932	51	7658											
NT5DC3	51559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104171814	104171814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	104171814	G	T	104171814	3	4	122	1	0	0	0	0	1	0	0	0	10699	1165	41	4	210	4	NT5DC3	12	104171814	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	37532851	104171814	29680081	52	7659											
MYO1H	283446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	109826583	109826583	+	Silent	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	109826583	C	T	109826583	2	4	122	1	0	0	0	0	0	0	0	1	10082	535	19	1		1	MYO1H	12	109826583	Silent	SNP	C	TCGA-B0-4827-01A-02D-1421-08	5654769	109826583	24025312	53	7660											
NOS1	4842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117672492	117672492	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	117672492	A	T	117672492	3	4	122	1	0	0	0	0	1	0	0	0	10548	188	7	5	1227	5	NOS1	12	117672492	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	7845909	117672492	16179403	54	7661											
RNF10	9921	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121002894	121002894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	121002894	G	T	121002894	3	4	122	1	0	0	0	0	1	0	0	0	13435	942	33	4	1727	4	RNF10	12	121002894	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	3330402	121002894	12849001	55	7662											
ATP12A	479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25281239	25281239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	25281239	G	A	25281239	3	1	122	1	0	0	0	0	1	0	0	0	1122	1232	43	2	2328	2	ATP12A	13	25281239	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08		25281239	89888639	56	7663											
ALG5	29880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	37567752	37567752	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	37567752	G	C	37567752	3	2	122	1	0	0	0	0	1	0	0	0	521	1299	45	4	659	4	ALG5	13	37567752	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	12286513	37567752	77602126	57	7664											
FNTB	2342	broad.mit.edu;hgsc.bcm.edu	37	14	65511120	65511120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	65511120	C	T	65511120	3	4	122	1	0	0	0	0	1	0	0	0	5985	768	27	1	948	1	FNTB	14	65511120	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08		65511120	41838420	58	7665											
ABCD4	5826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74757105	74757105	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	74757105	C	G	74757105	3	3	122	1	0	0	0	0	1	0	0	0	63	855	30	4	636	4	ABCD4	14	74757105	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	9245985	74757105	32592435	59	7666											
PPIP5K1	9677	broad.mit.edu	37	15	43873430	43873430	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	43873430	G	G	43873430	3	3	122	1	0	0	0	0	1	0	0	0	12342	14	1	3	3583	3	PPIP5K1	15	43873430	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08		43873430	58657962	60	7667											
PARP6	56965	broad.mit.edu;hgsc.bcm.edu	37	15	72542434	72542434	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	72542434	C	T	72542434	5	4	122	1	0	0	0	0	0	0	1	0	11471	579	20	2	498	2	PARP6	15	72542434	Splice_Site	SNP	C	TCGA-B0-4827-01A-02D-1421-08	28669004	72542434	29988958	61	7668											
DCUN1D3	123879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	20871576	20871576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	20871576	A	G	20871576	3	3	122	1	0	0	0	0	1	0	0	0	4317	420	15	3	371	3	DCUN1D3	16	20871576	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08		20871576	69483177	62	7669											
SRCAP	10847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30734516	30734516	+	Silent	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	30734516	C	T	30734516	2	4	122	1	0	0	0	0	0	0	0	1	15147	813	29	2		2	SRCAP	16	30734516	Silent	SNP	C	TCGA-B0-4827-01A-02D-1421-08	9862940	30734516	59620237	63	7670											
LPCAT2	54947	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	55565881	55565881	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	55565881	A	T	55565881	3	4	122	1	0	0	0	0	1	0	0	0	8918	14	1	5	716	5	LPCAT2	16	55565881	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	24831365	55565881	34788872	64	7671											
RANBP10	57610	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67778202	67778202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	67778202	C	T	67778202	3	4	122	1	0	0	0	0	1	0	0	0	13039	739	26	2	1349	2	RANBP10	16	67778202	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	12212321	67778202	22576551	65	7672											
NFATC3	4775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68208354	68208354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	68208354	A	G	68208354	3	3	122	1	0	0	0	0	1	0	0	0	10371	101	4	3	1874	3	NFATC3	16	68208354	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	430152	68208354	22146399	66	7673											
POLR2A	5430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7405412	7405412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	7405412	T	C	7405412	3	2	122	1	0	0	0	0	1	0	0	0	12221	1493	52	3	2601	3	POLR2A	17	7405412	Missense_Mutation	SNP	T	TCGA-B0-4827-01A-02D-1421-08		7405412	73789798	67	7674											
MYH3	4621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10535165	10535165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	10535165	C	A	10535165	3	1	122	1	0	0	0	0	1	0	0	0	10043	855	30	4	725	4	MYH3	17	10535165	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	3129753	10535165	70660045	68	7675											
RGS9	8787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	63149596	63149596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	63149596	C	A	63149596	3	1	122	1	0	0	0	0	1	0	0	0	13326	506	18	4	120	4	RGS9	17	63149596	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	52614431	63149596	18045614	69	7676											
NOL11	25926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	65735643	65735643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	65735643	G	C	65735643	3	2	122	1	0	0	0	0	1	0	0	0	10528	1020	36	4	1916	4	NOL11	17	65735643	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	2586047	65735643	15459567	70	7677											
WIPI1	55062	broad.mit.edu;hgsc.bcm.edu	37	17	66422217	66422217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	66422217	G	A	66422217	3	1	122	1	0	0	0	0	1	0	0	0	17382	1014	35	2	56	2	WIPI1	17	66422217	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	686574	66422217	14772993	71	7678											
ABCA10	10349	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	67189998	67189998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	67189998	A	T	67189998	3	4	122	1	0	0	0	0	1	0	0	0	29	14	1	5	3261	5	ABCA10	17	67189998	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	767781	67189998	14005212	72	7679											
TSEN54	283989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73519837	73519837	+	Silent	SNP	C	C	G	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	G	73519837	C	G	73519837	2	3	122	1	0	0	0	0	0	0	0	1	16626	668	24	4		4	TSEN54	17	73519837	Silent	SNP	C	TCGA-B0-4827-01A-02D-1421-08	6329839	73519837	7675373	73	7680											
THEG	51298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	362387	362387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	362387	T	A	362387	3	1	122	1	0	0	0	0	1	0	0	0	15869	1435	50	5	190	5	THEG	19	362387	Missense_Mutation	SNP	T	TCGA-B0-4827-01A-02D-1421-08		362387	58766596	74	7681											
C19orf21	126353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	757806	757806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	757806	C	T	757806	3	4	122	1	0	0	0	0	1	0	0	0	1915	507	18	2	862	2	C19orf21	19	757806	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	395419	757806	58371177	75	7682											
ATP8B3	148229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1807166	1807166	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	1807166	C	T	1807166	5	4	122	1	0	0	0	0	0	0	1	0	1196	521	18	2	3430	2	ATP8B3	19	1807166	Splice_Site	SNP	C	TCGA-B0-4827-01A-02D-1421-08	1049360	1807166	57321817	76	7683											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9066745	9066745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	9066745	G	T	9066745	3	4	122	1	0	0	0	0	1	0	0	0	9980	1386	48	4	23150	4	MUC16	19	9066745	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08	7259579	9066745	50062238	77	7684											
OR10H2	26538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15839672	15839672	+	Silent	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	15839672	C	T	15839672	2	4	122	1	0	0	0	0	0	0	0	1	10913	610	22	2		2	OR10H2	19	15839672	Silent	SNP	C	TCGA-B0-4827-01A-02D-1421-08	6772927	15839672	43289311	78	7685											
RINL	126432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39360340	39360340	+	Silent	SNP	G	G	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	39360340	G	C	39360340	2	2	122	1	0	0	0	0	0	0	0	1	13388	1219	43	4		4	RINL	19	39360340	Silent	SNP	G	TCGA-B0-4827-01A-02D-1421-08	23520668	39360340	19768643	79	7686											
AKT2	208	broad.mit.edu	37	19	40742001	40742001	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	40742001	C	C	40742001	3	2	122	1	0	0	0	0	1	0	0	0	480	1667	58	3	490	3	AKT2	19	40742001	Missense_Mutation	SNP	T	TCGA-B0-4827-01A-02D-1421-08	1381661	40742001	18386982	80	7687											
CYP2A13	1553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41594410	41594410	+	Silent	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	41594410	C	T	41594410	2	4	122	1	0	0	0	0	0	0	0	1	4163	796	28	2		2	CYP2A13	19	41594410	Silent	SNP	C	TCGA-B0-4827-01A-02D-1421-08	852409	41594410	17534573	81	7688											
C20orf196	149840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	5843933	5843933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	5843933	G	T	5843933	3	4	122	1	0	0	0	0	1	0	0	0	2103	1203	42	4	448	4	C20orf196	20	5843933	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08		5843933	57181587	82	7689											
PLCG1	5335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39798840	39798840	+	Silent	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	39798840	C	T	39798840	2	4	122	1	0	0	0	0	0	0	0	1	12042	639	23	1		1	PLCG1	20	39798840	Silent	SNP	C	TCGA-B0-4827-01A-02D-1421-08	33954907	39798840	23226680	83	7690											
SAMD10	140700	broad.mit.edu	37	20	62607109	62607109	+	Silent	SNP	C	T	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	62607109	T	T	62607109	2	4	122	1	0	0	0	0	0	0	0	1	13828	697	25	2		2	SAMD10	20	62607109	Silent	SNP	C	TCGA-B0-4827-01A-02D-1421-08	22808269	62607109	418411	84	7691											
CBR3	874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37518699	37518699	+	Silent	SNP	C	C	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	37518699	C	A	37518699	2	1	122	1	0	0	0	0	0	0	0	1	2711	816	29	4		4	CBR3	21	37518699	Silent	SNP	C	TCGA-B0-4827-01A-02D-1421-08		37518699	10611196	85	7692											
ZFX	7543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	24228654	24228654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	24228654	G	A	24228654	3	1	122	1	0	0	0	0	1	0	0	0	17673	1059	37	1	1664	1	ZFX	23	24228654	Missense_Mutation	SNP	G	TCGA-B0-4827-01A-02D-1421-08		24228654	131041906	86	7693											
HDX	139324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	83724059	83724059	+	Silent	SNP	T	T	C	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	C	83724059	T	C	83724059	2	2	122	1	0	0	0	0	0	0	0	1	7033	1567	55	3		3	HDX	23	83724059	Silent	SNP	T	TCGA-B0-4827-01A-02D-1421-08	59495405	83724059	71546501	87	7694											
TBC1D8B	54885	broad.mit.edu;hgsc.bcm.edu	37	X	106092530	106092530	+	Silent	SNP	G	G	A	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	A	106092530	G	A	106092530	2	1	122	1	0	0	0	0	0	0	0	1	15638	933	33	2		2	TBC1D8B	23	106092530	Silent	SNP	G	TCGA-B0-4827-01A-02D-1421-08	22368471	106092530	49178030	88	7695											
GPR112	139378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135431578	135431578	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	135431578	A	T	135431578	3	4	122	1	0	0	0	0	1	0	0	0	6636	130	5	5	5723	5	GPR112	23	135431578	Missense_Mutation	SNP	A	TCGA-B0-4827-01A-02D-1421-08	29339048	135431578	19838982	89	7696											
MAGEC1	9947	broad.mit.edu;hgsc.bcm.edu	37	X	140994211	140994211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	140994211	C	T	140994211	3	4	122	1	0	0	0	0	1	0	0	0	9187	855	30	2	1027	2	MAGEC1	23	140994211	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	5562633	140994211	14276349	90	7697											
GABRE	2564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151123279	151123279	+	Missense_Mutation	SNP	C	C	T	rs80186670	bycluster;byfrequency	TCGA-B0-4827-01A-02D-1421-08	TCGA-B0-4827-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02f83f9a-4e4d-44f3-8d67-b4fc2d35102b	bb38d638-fc05-4d25-bbb9-180592399803	T	151123279	C	T	151123279	3	4	122	1	0	0	0	0	1	0	0	0	6177	768	27	1	109	1	GABRE	23	151123279	Missense_Mutation	SNP	C	TCGA-B0-4827-01A-02D-1421-08	10129068	151123279	4147281	91	7698											
PRAMEF7	441871	hgsc.bcm.edu	37	1	12980127	12980127	+	Missense_Mutation	SNP	C	T	T	rs1832597	bycluster;byfrequency	TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	12980127	T	T	12980127	3	4	123	1	0	0	0	0	1	0	0	0	12449	652	23	1	1329	1	PRAMEF7	1	12980127	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10		12980127	236270494	1	7699											
SRRM1	10250	hgsc.bcm.edu	37	1	24995884	24995884	+	Silent	SNP	C	C	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	24995884	C	G	24995884	2	3	123	1	0	0	0	0	0	0	0	1	15180	610	22	4		4	SRRM1	1	24995884	Silent	SNP	C	TCGA-B0-4828-01A-01D-1361-10	12015757	24995884	224254737	2	7700											
ZNHIT6	54680	hgsc.bcm.edu;ucsc.edu	37	1	86123567	86123567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	86123567	C	G	86123567	3	3	123	1	0	0	0	0	1	0	0	0	18221	825	29	4	85	4	ZNHIT6	1	86123567	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	61127683	86123567	163127054	3	7701	81	2									
ZNHIT6	54680	hgsc.bcm.edu;ucsc.edu	37	1	86123569	86123569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	86123569	A	T	86123569	3	4	123	1	0	0	0	0	1	0	0	0	18221	98	4	5	87	5	ZNHIT6	1	86123569	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	2	86123569	163127052	4	7702	81	2									
HIAT1	64645	hgsc.bcm.edu;ucsc.edu	37	1	100503799	100503799	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	100503799	G	C	100503799	3	2	123	1	0	0	0	0	1	0	0	0	7104	1232	43	4	13	4	HIAT1	1	100503799	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	14380230	100503799	148746822	5	7703											
OTUD7B	56957	hgsc.bcm.edu;ucsc.edu	37	1	149921598	149921598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	149921598	C	T	149921598	3	4	123	1	0	0	0	0	1	0	0	0	11326	768	27	1	1490	1	OTUD7B	1	149921598	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	49417799	149921598	99329023	6	7704											
USP21	27005	hgsc.bcm.edu;ucsc.edu	37	1	161134659	161134660	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	161134660	-	A	161134659	7	5	123	1	0	1	1	0	0	0	0	0	17065	816	29	0	1457	0	USP21	1	161134659	Frame_Shift_Ins	INS	-	TCGA-B0-4828-01A-01D-1361-10	11213061	161134659	88115962	7	7705											
PLEKHA6	22874	hgsc.bcm.edu	37	1	204242841	204242841	+	Silent	SNP	T	T	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	204242841	T	C	204242841	2	2	123	1	0	0	0	0	0	0	0	1	12067	1567	55	3		3	PLEKHA6	1	204242841	Silent	SNP	T	TCGA-B0-4828-01A-01D-1361-10	43108182	204242841	45007780	8	7706											
SMC6	79677	hgsc.bcm.edu;ucsc.edu	37	2	17877627	17877627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	17877627	T	G	17877627	3	3	123	1	0	0	0	0	1	0	0	0	14800	1850	64	5	842	5	SMC6	2	17877627	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10		17877627	225321746	9	7707											
SDC1	6382	hgsc.bcm.edu;ucsc.edu	37	2	20402566	20402566	+	Silent	SNP	G	G	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	20402566	G	C	20402566	2	2	123	1	0	0	0	0	0	0	0	1	13964	987	35	4		4	SDC1	2	20402566	Silent	SNP	G	TCGA-B0-4828-01A-01D-1361-10	2524939	20402566	222796807	10	7708											
HS1BP3	64342	hgsc.bcm.edu;ucsc.edu	37	2	20824634	20824634	+	Silent	SNP	T	T	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	20824634	T	C	20824634	2	2	123	1	0	0	0	0	0	0	0	1	7368	1722	60	3		3	HS1BP3	2	20824634	Silent	SNP	T	TCGA-B0-4828-01A-01D-1361-10	422068	20824634	222374739	11	7709											
LOXL3	84695	hgsc.bcm.edu;ucsc.edu	37	2	74763244	74763244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	74763244	C	T	74763244	3	4	123	1	0	0	0	0	1	0	0	0	8908	710	25	2	1166	2	LOXL3	2	74763244	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	53938610	74763244	168436129	12	7710											
LY75	4065	hgsc.bcm.edu	37	2	160697359	160697359	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	160697359	C	A	160697359	4	1	123	1	0	0	0	0	0	1	0	0	9106	864	30	4	1824	4	LY75	2	160697359	Nonsense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	85934115	160697359	82502014	13	7711											
GLS	2744	hgsc.bcm.edu	37	2	191792046	191792046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	191792046	A	C	191792046	3	2	123	1	0	0	0	0	1	0	0	0	6470	69	3	5	1309	5	GLS	2	191792046	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	31094687	191792046	51407327	14	7712											
MDH1B	130752	hgsc.bcm.edu	37	2	207619861	207619861	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	207619861	A	C	207619861	3	2	123	1	0	0	0	0	1	0	0	0	9416	391	14	5	806	5	MDH1B	2	207619861	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	15827815	207619861	35579512	15	7713											
SLC16A14	151473	hgsc.bcm.edu	37	2	230911157	230911157	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	230911157	G	C	230911157	3	2	123	1	0	0	0	0	1	0	0	0	14420	991	35	4	855	4	SLC16A14	2	230911157	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	23291296	230911157	12288216	16	7714											
VHL	7428	ucsc.edu	37	3	10188197	10188197	+	Splice_Site	SNP	G	G	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	G	C	G	G	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	10188197	G	C	10188197	5	2	123	1	0	0	0	0	0	0	1	0	17174	1014	35	4	346	4	VHL	3	10188197	Splice_Site	SNP	G	TCGA-B0-4828-01A-01D-1361-10		10188197	187834233	17	7715											
PBRM1	55193	hgsc.bcm.edu	37	3	52651528	52651528	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	52651528	A	C	52651528	3	2	123	1	0	0	0	0	1	0	0	0	11498	217	8	5	3400	5	PBRM1	3	52651528	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	42463331	52651528	145370902	18	7716											
KIAA2018	205717	hgsc.bcm.edu	37	3	113379781	113379782	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	-	113379782	CA	-	113379781	7	5	123	1	0	1	0	1	0	0	0	0	8275	594	21	0	5993	0	KIAA2018	3	113379781	Frame_Shift_Del	DEL	CA	TCGA-B0-4828-01A-01D-1361-10	60728253	113379781	84642649	19	7717											
PCCB	5096	hgsc.bcm.edu	37	3	136012687	136012687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	136012687	G	C	136012687	3	2	123	1	0	0	0	0	1	0	0	0	11512	933	33	4	834	4	PCCB	3	136012687	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	22632906	136012687	62009743	20	7718											
SI	6476	hgsc.bcm.edu	37	3	164776805	164776805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	164776805	G	T	164776805	3	4	123	1	0	0	0	0	1	0	0	0	14310	1368	48	4	4287	4	SI	3	164776805	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	28764118	164776805	33245625	21	7719											
LRRC15	131578	hgsc.bcm.edu	37	3	194081358	194081358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	194081358	G	T	194081358	3	4	123	1	0	0	0	0	1	0	0	0	8977	1328	46	4	1334	4	LRRC15	3	194081358	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	29304553	194081358	3941072	22	7720											
TET2	54790	hgsc.bcm.edu;ucsc.edu	37	4	106156048	106156048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	106156048	C	A	106156048	3	1	123	1	0	0	0	0	1	0	0	0	15782	827	29	4	951	4	TET2	4	106156048	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10		106156048	84998228	23	7721											
GSTCD	79807	hgsc.bcm.edu	37	4	106638847	106638847	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	106638847	T	G	106638847	3	3	123	1	0	0	0	0	1	0	0	0	6842	1435	50	5	79	5	GSTCD	4	106638847	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	482799	106638847	84515429	24	7722											
ODZ3	0	hgsc.bcm.edu	37	4	183601821	183601821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	183601821	G	T	183601821	3	4	123	1	0	0	0	0	1	0	0	0	10843	1232	43	4	1799	4	ODZ3	4	183601821	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	76962974	183601821	7552455	25	7723											
DNAH5	1767	hgsc.bcm.edu;ucsc.edu	37	5	13922428	13922428	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	13922428	A	C	13922428	3	2	123	1	0	0	0	0	1	0	0	0	4606	14	1	5	13726	5	DNAH5	5	13922428	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10		13922428	166992832	26	7724											
FAM105A	54491	hgsc.bcm.edu	37	5	14602319	14602319	+	Missense_Mutation	SNP	C	C	A	rs144733724		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	14602319	C	A	14602319	3	1	123	1	0	0	0	0	1	0	0	0	5391	826	29	4	394	4	FAM105A	5	14602319	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	679891	14602319	166312941	27	7725											
CDH18	1016	hgsc.bcm.edu;ucsc.edu	37	5	19747281	19747281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	19747281	C	T	19747281	3	4	123	1	0	0	0	0	1	0	0	0	3105	623	22	2	2119	2	CDH18	5	19747281	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	5144962	19747281	161167979	28	7726											
AP3B1	8546	hgsc.bcm.edu	37	5	77316582	77316582	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	77316582	G	A	77316582	4	1	123	1	0	0	0	0	0	1	0	0	744	1299	45	2	370	2	AP3B1	5	77316582	Nonsense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	57569301	77316582	103598678	29	7727											
GNPDA1	10007	hgsc.bcm.edu	37	5	141391485	141391485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	141391485	A	T	141391485	3	4	123	1	0	0	0	0	1	0	0	0	6549	304	11	5	777	5	GNPDA1	5	141391485	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	64074903	141391485	39523775	30	7728											
BTNL8	79908	hgsc.bcm.edu	37	5	180377470	180377470	+	Missense_Mutation	SNP	G	G	A	rs113820381	by1000genomes	TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	180377470	G	A	180377470	3	1	123	1	0	0	0	0	1	0	0	0	1569	1319	46	2	1615	2	BTNL8	5	180377470	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	38985985	180377470	537790	31	7729											
TDRD6	221400	hgsc.bcm.edu	37	6	46656689	46656689	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	46656689	A	C	46656689	3	2	123	1	0	0	0	0	1	0	0	0	15746	304	11	5	826	5	TDRD6	6	46656689	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10		46656689	124458378	32	7730											
HIVEP2	3097	hgsc.bcm.edu;ucsc.edu	37	6	143091371	143091371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	143091371	G	A	143091371	3	1	123	1	0	0	0	0	1	0	0	0	7194	942	33	2	2859	2	HIVEP2	6	143091371	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	96434682	143091371	28023696	33	7731											
SYNJ2	8871	hgsc.bcm.edu	37	6	158499241	158499241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	158499241	A	C	158499241	3	2	123	1	0	0	0	0	1	0	0	0	15465	14	1	5	2565	5	SYNJ2	6	158499241	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	15407870	158499241	12615826	34	7732											
SYTL3	94120	hgsc.bcm.edu	37	6	159166676	159166676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	159166676	G	T	159166676	3	4	123	1	0	0	0	0	1	0	0	0	15496	933	33	4	842	4	SYTL3	6	159166676	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	667435	159166676	11948391	35	7733											
TCP10	6953	hgsc.bcm.edu	37	6	167791530	167791530	+	Missense_Mutation	SNP	G	G	C	rs56018421	bycluster	TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	167791530	G	C	167791530	3	2	123	1	0	0	0	0	1	0	0	0	15722	1368	48	4	670	4	TCP10	6	167791530	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	8624854	167791530	3323537	36	7734											
MLLT4	4301	hgsc.bcm.edu	37	6	168273013	168273013	+	Silent	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	168273013	A	T	168273013	2	4	123	1	0	0	0	0	0	0	0	1	9636	262	10	5		5	MLLT4	6	168273013	Silent	SNP	A	TCGA-B0-4828-01A-01D-1361-10	481483	168273013	2842054	37	7735											
ADCYAP1R1	117	hgsc.bcm.edu;ucsc.edu	37	7	31121334	31121334	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	31121334	C	G	31121334	3	3	123	1	0	0	0	0	1	0	0	0	303	913	32	4	311	4	ADCYAP1R1	7	31121334	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10		31121334	128017329	38	7736											
TXNDC3	0	hgsc.bcm.edu;ucsc.edu	37	7	37903001	37903001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	37903001	C	T	37903001	3	4	123	1	0	0	0	0	1	0	0	0	16810	855	30	2	413	2	TXNDC3	7	37903001	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	6781667	37903001	121235662	39	7737											
ZNF716	441234	hgsc.bcm.edu;ucsc.edu	37	7	57528629	57528629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	57528629	C	A	57528629	3	1	123	1	0	0	0	0	1	0	0	0	18131	477	17	4	476	4	ZNF716	7	57528629	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	19625628	57528629	101610034	40	7738											
GIGYF1	64599	hgsc.bcm.edu	37	7	100282980	100282980	+	Silent	SNP	G	G	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	100282980	G	A	100282980	2	1	123	1	0	0	0	0	0	0	0	1	6384	1219	43	2		2	GIGYF1	7	100282980	Silent	SNP	G	TCGA-B0-4828-01A-01D-1361-10	42754351	100282980	58855683	41	7739											
SLC4A2	6522	hgsc.bcm.edu	37	7	150769065	150769065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	150769065	C	T	150769065	3	4	123	1	0	0	0	0	1	0	0	0	14667	652	23	1	2435	1	SLC4A2	7	150769065	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	50486085	150769065	8369598	42	7740											
EBF2	64641	hgsc.bcm.edu;ucsc.edu	37	8	25744374	25744374	+	Silent	SNP	T	T	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	25744374	T	C	25744374	2	2	123	1	0	0	0	0	0	0	0	1	4883	1548	54	3		3	EBF2	8	25744374	Silent	SNP	T	TCGA-B0-4828-01A-01D-1361-10		25744374	120619648	43	7741											
PXDNL	137902	hgsc.bcm.edu;ucsc.edu	37	8	52320891	52320891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	52320891	T	A	52320891	3	1	123	1	0	0	0	0	1	0	0	0	12861	1667	58	5	1126	5	PXDNL	8	52320891	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	26576517	52320891	94043131	44	7742											
LAPTM4B	55353	hgsc.bcm.edu	37	8	98817636	98817636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	98817636	A	G	98817636	3	3	123	1	0	0	0	0	1	0	0	0	8632	188	7	3	434	3	LAPTM4B	8	98817636	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	46496745	98817636	47546386	45	7743											
PKHD1L1	93035	hgsc.bcm.edu;ucsc.edu	37	8	110464467	110464467	+	Silent	SNP	T	T	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	110464467	T	A	110464467	2	1	123	1	0	0	0	0	0	0	0	1	11979	1538	54	5		5	PKHD1L1	8	110464467	Silent	SNP	T	TCGA-B0-4828-01A-01D-1361-10	11646831	110464467	35899555	46	7744											
SAMD12	401474	hgsc.bcm.edu;ucsc.edu	37	8	119452167	119452167	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	119452167	G	C	119452167	3	2	123	1	0	0	0	0	1	0	0	0	13830	933	33	4	414	4	SAMD12	8	119452167	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	8987700	119452167	26911855	47	7745											
C9orf82	0	hgsc.bcm.edu	37	9	26842572	26842572	+	Silent	SNP	G	G	A	rs146970170	byfrequency	TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	26842572	G	A	26842572	2	1	123	1	0	0	0	0	0	0	0	1	2501	1136	40	1		1	C9orf82	9	26842572	Silent	SNP	G	TCGA-B0-4828-01A-01D-1361-10		26842572	114370859	48	7746											
FLJ46321	0	hgsc.bcm.edu	37	9	84608502	84608502	+	Silent	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	84608502	A	T	84608502	2	4	123	1	0	0	0	0	0	0	0	1	5939	117	5	5		5	FLJ46321	9	84608502	Silent	SNP	A	TCGA-B0-4828-01A-01D-1361-10	57765930	84608502	56604929	49	7747											
SPTLC1	10558	hgsc.bcm.edu	37	9	94843154	94843154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	94843154	T	C	94843154	3	2	123	1	0	0	0	0	1	0	0	0	15135	1763	61	3	1126	3	SPTLC1	9	94843154	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	10234652	94843154	46370277	50	7748											
ZNF782	158431	hgsc.bcm.edu;ucsc.edu	37	9	99580432	99580432	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	99580432	T	A	99580432	4	1	123	1	0	0	0	0	0	1	0	0	18167	1850	64	5	230	5	ZNF782	9	99580432	Nonsense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	4737278	99580432	41632999	51	7749											
PHF19	26147	hgsc.bcm.edu	37	9	123620470	123620470	+	Missense_Mutation	SNP	G	G	C	rs150031973	byfrequency;alternate_allele	TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	123620470	G	C	123620470	3	2	123	1	0	0	0	0	1	0	0	0	11836	1232	43	4	251	4	PHF19	9	123620470	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	24040038	123620470	17592961	52	7750											
FAM129B	64855	hgsc.bcm.edu;ucsc.edu	37	9	130294041	130294041	+	Silent	SNP	G	G	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	130294041	G	A	130294041	2	1	123	1	0	0	0	0	0	0	0	1	5441	1164	41	2		2	FAM129B	9	130294041	Silent	SNP	G	TCGA-B0-4828-01A-01D-1361-10	6673571	130294041	10919390	53	7751											
SLC39A12	221074	hgsc.bcm.edu	37	10	18280180	18280180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	18280180	G	A	18280180	3	1	123	1	0	0	0	0	1	0	0	0	14628	1174	41	2	1396	2	SLC39A12	10	18280180	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10		18280180	117254567	54	7752											
ZNF488	118738	hgsc.bcm.edu;ucsc.edu	37	10	48371284	48371284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	48371284	C	T	48371284	3	4	123	1	0	0	0	0	1	0	0	0	17952	623	22	2	754	2	ZNF488	10	48371284	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	30091104	48371284	87163463	55	7753											
CDH23	64072	hgsc.bcm.edu	37	10	73483833	73483833	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	73483833	T	A	73483833	3	1	123	1	0	0	0	0	1	0	0	0	3110	1841	64	5	3818	5	CDH23	10	73483833	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	25112549	73483833	62050914	56	7754											
C10orf82	143379	hgsc.bcm.edu;ucsc.edu	37	10	118424301	118424301	+	Silent	SNP	G	G	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	118424301	G	A	118424301	2	1	123	1	0	0	0	0	0	0	0	1	1622	1335	47	2		2	C10orf82	10	118424301	Silent	SNP	G	TCGA-B0-4828-01A-01D-1361-10	44940468	118424301	17110446	57	7755											
HSPA12A	259217	hgsc.bcm.edu;ucsc.edu	37	10	118435938	118435938	+	Silent	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	118435938	C	T	118435938	2	4	123	1	0	0	0	0	0	0	0	1	7411	871	31	1		1	HSPA12A	10	118435938	Silent	SNP	C	TCGA-B0-4828-01A-01D-1361-10	11637	118435938	17098809	58	7756											
OVCH2	341277	hgsc.bcm.edu;ucsc.edu	37	11	7713157	7713157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	7713157	C	T	7713157	3	4	123	1	0	0	0	0	1	0	0	0	11331	884	31	1	218	1	OVCH2	11	7713157	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10		7713157	127293359	59	7757											
SAA1	6288	hgsc.bcm.edu;ucsc.edu	37	11	18291358	18291358	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	18291358	G	C	18291358	3	2	123	1	0	0	0	0	1	0	0	0	13811	942	33	4	335	4	SAA1	11	18291358	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	10578201	18291358	116715158	60	7758											
RPUSD4	84881	hgsc.bcm.edu	37	11	126080885	126080885	+	Silent	SNP	T	T	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	126080885	T	A	126080885	2	1	123	1	0	0	0	0	0	0	0	1	13682	1538	54	5		5	RPUSD4	11	126080885	Silent	SNP	T	TCGA-B0-4828-01A-01D-1361-10	107789527	126080885	8925631	61	7759											
CAPRIN2	65981	hgsc.bcm.edu;ucsc.edu	37	12	30872063	30872063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	30872063	T	A	30872063	3	1	123	1	0	0	0	0	1	0	0	0	2638	1609	56	5	1162	5	CAPRIN2	12	30872063	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10		30872063	102979832	62	7760											
INHBE	83729	hgsc.bcm.edu;ucsc.edu	37	12	57850460	57850460	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	57850460	C	G	57850460	3	3	123	1	0	0	0	0	1	0	0	0	7751	854	30	4	888	4	INHBE	12	57850460	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	26978397	57850460	76001435	63	7761											
LRIG3	121227	hgsc.bcm.edu;ucsc.edu	37	12	59271294	59271294	+	Silent	SNP	C	C	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	59271294	C	A	59271294	2	1	123	1	0	0	0	0	0	0	0	1	8953	581	21	4		4	LRIG3	12	59271294	Silent	SNP	C	TCGA-B0-4828-01A-01D-1361-10	1420834	59271294	74580601	64	7762											
E2F7	144455	hgsc.bcm.edu;ucsc.edu	37	12	77417897	77417897	+	Silent	SNP	G	G	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	77417897	G	T	77417897	2	4	123	1	0	0	0	0	0	0	0	1	4874	1306	46	4		4	E2F7	12	77417897	Silent	SNP	G	TCGA-B0-4828-01A-01D-1361-10	18146603	77417897	56433998	65	7763											
LTA4H	4048	hgsc.bcm.edu	37	12	96421314	96421314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	96421314	A	G	96421314	3	3	123	1	0	0	0	0	1	0	0	0	9076	14	1	3	1584	3	LTA4H	12	96421314	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	19003417	96421314	37430581	66	7764											
NEDD1	121441	hgsc.bcm.edu	37	12	97303545	97303545	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	97303545	A	T	97303545	3	4	123	1	0	0	0	0	1	0	0	0	10316	246	9	5	35	5	NEDD1	12	97303545	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	882231	97303545	36548350	67	7765											
RNF17	56163	hgsc.bcm.edu	37	13	25367296	25367296	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	25367296	C	G	25367296	3	3	123	1	0	0	0	0	1	0	0	0	13474	913	32	4	1090	4	RNF17	13	25367296	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10		25367296	89802582	68	7766											
FREM2	341640	hgsc.bcm.edu	37	13	39264018	39264018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	39264018	T	C	39264018	3	2	123	1	0	0	0	0	1	0	0	0	6052	1435	50	3	2539	3	FREM2	13	39264018	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	13896722	39264018	75905860	69	7767											
KTN1	3895	hgsc.bcm.edu;ucsc.edu	37	14	56103977	56103977	+	Silent	SNP	A	A	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	56103977	A	G	56103977	2	3	123	1	0	0	0	0	0	0	0	1	8592	175	7	3		3	KTN1	14	56103977	Silent	SNP	A	TCGA-B0-4828-01A-01D-1361-10		56103977	51245563	70	7768											
ZFYVE26	23503	hgsc.bcm.edu	37	14	68229089	68229089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	68229089	T	C	68229089	3	2	123	1	0	0	0	0	1	0	0	0	17680	1464	51	3	1455	3	ZFYVE26	14	68229089	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	12125112	68229089	39120451	71	7769											
BRF1	2972	hgsc.bcm.edu	37	14	105695184	105695184	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	105695184	T	G	105695184	3	3	123	1	0	0	0	0	1	0	0	0	1512	1841	64	5	1320	5	BRF1	14	105695184	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	37466095	105695184	1654356	72	7770											
DISP2	85455	hgsc.bcm.edu	37	15	40661375	40661375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	40661375	T	C	40661375	3	2	123	1	0	0	0	0	1	0	0	0	4542	1841	64	3	3092	3	DISP2	15	40661375	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10		40661375	61870017	73	7771											
LCMT2	9836	hgsc.bcm.edu	37	15	43621544	43621544	+	Silent	SNP	G	G	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	43621544	G	T	43621544	2	4	123	1	0	0	0	0	0	0	0	1	8686	1086	38	4		4	LCMT2	15	43621544	Silent	SNP	G	TCGA-B0-4828-01A-01D-1361-10	2960169	43621544	58909848	74	7772											
LMAN1L	79748	hgsc.bcm.edu;ucsc.edu	37	15	75115023	75115023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	75115023	C	G	75115023	3	3	123	1	0	0	0	0	1	0	0	0	8844	565	20	4	1214	4	LMAN1L	15	75115023	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	31493479	75115023	27416369	75	7773											
TPSB2	64499	hgsc.bcm.edu	37	16	1278744	1278744	+	Missense_Mutation	SNP	C	C	T	rs62012862	bycluster;byfrequency;by1000genomes	TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	1278744	C	T	1278744	3	4	123	1	0	0	0	0	1	0	0	0	16436	739	26	2	97	2	TPSB2	16	1278744	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10		1278744	89076009	76	7774											
UQCRC2	7385	hgsc.bcm.edu	37	16	21974117	21974117	+	Missense_Mutation	SNP	C	C	T	rs139500759	by1000genomes;alternate_allele	TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	21974117	C	T	21974117	3	4	123	1	0	0	0	0	1	0	0	0	17032	478	17	2	447	2	UQCRC2	16	21974117	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	20695373	21974117	68380636	77	7775											
SF3B3	23450	hgsc.bcm.edu;ucsc.edu	37	16	70605091	70605091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	70605091	T	A	70605091	3	1	123	1	0	0	0	0	1	0	0	0	14165	1609	56	5	3596	5	SF3B3	16	70605091	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	48630974	70605091	19749662	78	7776											
MARVELD3	91862	hgsc.bcm.edu	37	16	71663303	71663303	+	Silent	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	71663303	C	T	71663303	2	4	123	1	0	0	0	0	0	0	0	1	9326	610	22	2		2	MARVELD3	16	71663303	Silent	SNP	C	TCGA-B0-4828-01A-01D-1361-10	1058212	71663303	18691450	79	7777											
ALOX15B	247	hgsc.bcm.edu;ucsc.edu	37	17	7945736	7945736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	7945736	G	T	7945736	3	4	123	1	0	0	0	0	1	0	0	0	539	1029	36	4	513	4	ALOX15B	17	7945736	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10		7945736	73249474	80	7778											
GAS2L2	246176	hgsc.bcm.edu	37	17	34071950	34071950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	34071950	G	T	34071950	3	4	123	1	0	0	0	0	1	0	0	0	6254	1232	43	4	80	4	GAS2L2	17	34071950	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	26126214	34071950	47123260	81	7779											
ACSF2	80221	hgsc.bcm.edu;ucsc.edu	37	17	48549808	48549808	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	48549808	A	T	48549808	3	4	123	1	0	0	0	0	1	0	0	0	175	304	11	5	1389	5	ACSF2	17	48549808	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	14477858	48549808	32645402	82	7780											
CACNA1G	8913	hgsc.bcm.edu	37	17	48680508	48680508	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	48680508	A	T	48680508	3	4	123	1	0	0	0	0	1	0	0	0	2546	333	12	5	4199	5	CACNA1G	17	48680508	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	130700	48680508	32514702	83	7781											
ABCA9	10350	hgsc.bcm.edu	37	17	67016618	67016618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	67016618	A	T	67016618	3	4	123	1	0	0	0	0	1	0	0	0	39	156	6	5	2447	5	ABCA9	17	67016618	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	18336110	67016618	14178592	84	7782											
ASXL3	80816	hgsc.bcm.edu	37	18	31324446	31324446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	31324446	C	A	31324446	3	1	123	1	0	0	0	0	1	0	0	0	1068	710	25	4	4680	4	ASXL3	18	31324446	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10		31324446	46752802	85	7783											
CXXC1	30827	hgsc.bcm.edu	37	18	47810394	47810394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	47810394	T	A	47810394	3	1	123	1	0	0	0	0	1	0	0	0	4099	1609	56	5	711	5	CXXC1	18	47810394	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	16485948	47810394	30266854	86	7784											
LONP1	9361	hgsc.bcm.edu	37	19	5693589	5693589	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	5693589	A	T	5693589	3	4	123	1	0	0	0	0	1	0	0	0	8899	304	11	5	379	5	LONP1	19	5693589	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10		5693589	53435394	87	7785											
OR7G3	390883	hgsc.bcm.edu;ucsc.edu	37	19	9237030	9237030	+	Silent	SNP	C	C	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	9237030	C	A	9237030	2	1	123	1	0	0	0	0	0	0	0	1	11231	465	17	4		4	OR7G3	19	9237030	Silent	SNP	C	TCGA-B0-4828-01A-01D-1361-10	3543441	9237030	49891953	88	7786											
NTN5	126147	hgsc.bcm.edu	37	19	49167834	49167834	+	Splice_Site	SNP	A	A	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	49167834	A	G	49167834	5	3	123	1	0	0	0	0	0	0	1	0	10710	173	6	3	667	3	NTN5	19	49167834	Splice_Site	SNP	A	TCGA-B0-4828-01A-01D-1361-10	39930804	49167834	9961149	89	7787											
MYH14	79784	hgsc.bcm.edu	37	19	50762505	50762505	+	Silent	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	50762505	C	T	50762505	2	4	123	1	0	0	0	0	0	0	0	1	10040	854	30	2		2	MYH14	19	50762505	Silent	SNP	C	TCGA-B0-4828-01A-01D-1361-10	1594671	50762505	8366478	90	7788											
ZNF587	84914	hgsc.bcm.edu	37	19	58370298	58370298	+	Missense_Mutation	SNP	G	G	A	rs3826671	bycluster	TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	58370298	G	A	58370298	3	1	123	1	0	0	0	0	1	0	0	0	18032	1087	38	1	528	1	ZNF587	19	58370298	Missense_Mutation	SNP	G	TCGA-B0-4828-01A-01D-1361-10	7607793	58370298	758685	91	7789											
C20orf107	0	hgsc.bcm.edu	37	20	55108625	55108625	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	55108625	A	C	55108625	3	2	123	1	0	0	0	0	1	0	0	0	2079	11	1	5	230	5	C20orf107	20	55108625	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10		55108625	7916895	92	7790											
IFNGR2	3460	hgsc.bcm.edu	37	21	34809269	34809269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	34809269	A	T	34809269	3	4	123	1	0	0	0	0	1	0	0	0	7557	259	9	5	1040	5	IFNGR2	21	34809269	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10		34809269	13320626	93	7791											
COL6A1	1291	hgsc.bcm.edu	37	21	47422537	47422537	+	Silent	SNP	C	C	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	47422537	C	A	47422537	2	1	123	1	0	0	0	0	0	0	0	1	3701	643	23	4		4	COL6A1	21	47422537	Silent	SNP	C	TCGA-B0-4828-01A-01D-1361-10	12613268	47422537	707358	94	7792											
TOB2	10766	hgsc.bcm.edu	37	22	41832415	41832415	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	41832415	A	T	41832415	3	4	123	1	0	0	0	0	1	0	0	0	16360	304	11	5	103	5	TOB2	22	41832415	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10		41832415	9472151	95	7793											
POLDIP3	84271	hgsc.bcm.edu	37	22	42988071	42988071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	42988071	C	A	42988071	3	1	123	1	0	0	0	0	1	0	0	0	12202	623	22	4	366	4	POLDIP3	22	42988071	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	1155656	42988071	8316495	96	7794											
USP11	8237	hgsc.bcm.edu	37	X	47100845	47100845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	47100845	T	A	47100845	3	1	123	1	0	0	0	0	1	0	0	0	17054	1783	62	5	1175	5	USP11	23	47100845	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10		47100845	108169715	97	7795											
GPR173	54328	hgsc.bcm.edu	37	X	53106303	53106303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	53106303	T	G	53106303	3	3	123	1	0	0	0	0	1	0	0	0	6678	1841	64	5	502	5	GPR173	23	53106303	Missense_Mutation	SNP	T	TCGA-B0-4828-01A-01D-1361-10	6005458	53106303	102164257	98	7796											
KDM5C	8242	hgsc.bcm.edu	37	X	53245090	53245090	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	A	53245090	C	A	53245090	4	1	123	1	0	0	0	0	0	1	0	0	8142	864	30	4	4010	4	KDM5C	23	53245090	Nonsense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	138787	53245090	102025470	99	7797											
KIF4A	24137	hgsc.bcm.edu	37	X	69637742	69637742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	T	69637742	C	T	69637742	3	4	123	1	0	0	0	0	1	0	0	0	8310	855	30	2	3370	2	KIF4A	23	69637742	Missense_Mutation	SNP	C	TCGA-B0-4828-01A-01D-1361-10	16392652	69637742	85632818	100	7798											
BRWD3	254065	hgsc.bcm.edu;ucsc.edu	37	X	79939596	79939596	+	Silent	SNP	T	T	C	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	C	79939596	T	C	79939596	2	2	123	1	0	0	0	0	0	0	0	1	1528	1770	62	3		3	BRWD3	23	79939596	Silent	SNP	T	TCGA-B0-4828-01A-01D-1361-10	10301854	79939596	75330964	101	7799											
SLC6A8	6535	hgsc.bcm.edu	37	X	152957540	152957540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4828-01A-01D-1361-10	TCGA-B0-4828-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c2e7f8c5-12bc-45e8-8407-9a39b54f5a4d	ac585f57-7f5d-4217-9022-a618a644f8f7	G	152957540	A	G	152957540	3	3	123	1	0	0	0	0	1	0	0	0	14703	72	3	3	769	3	SLC6A8	23	152957540	Missense_Mutation	SNP	A	TCGA-B0-4828-01A-01D-1361-10	73017944	152957540	2313020	102	7800											
CCDC28B	79140	hgsc.bcm.edu	37	1	32669934	32669936	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	-	32669936	AGA	-	32669934	7	5	124	1	0	1	0	1	0	0	0	0	2805	188	7	0	489	0	CCDC28B	1	32669934	In_Frame_Del	DEL	AGA	TCGA-B0-4833-01A-01D-1373-10		32669934	216580687	1	7801											
GNG12	55970	hgsc.bcm.edu;ucsc.edu	37	1	68173341	68173341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	68173341	T	C	68173341	3	2	124	1	0	0	0	0	1	0	0	0	6532	1493	52	3	197	3	GNG12	1	68173341	Missense_Mutation	SNP	T	TCGA-B0-4833-01A-01D-1373-10	35503407	68173341	181077280	2	7802											
ZZZ3	26009	hgsc.bcm.edu;ucsc.edu	37	1	78097613	78097613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	78097613	T	C	78097613	3	2	124	1	0	0	0	0	1	0	0	0	18268	1696	59	3	1328	3	ZZZ3	1	78097613	Missense_Mutation	SNP	T	TCGA-B0-4833-01A-01D-1373-10	9924272	78097613	171153008	3	7803											
USP33	23032	hgsc.bcm.edu;ucsc.edu	37	1	78183671	78183671	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	78183671	G	C	78183671	3	2	124	1	0	0	0	0	1	0	0	0	17076	1261	44	4	980	4	USP33	1	78183671	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	86058	78183671	171066950	4	7804											
NDUFS2	4720	hgsc.bcm.edu	37	1	161183974	161183974	+	Silent	SNP	A	A	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	161183974	A	T	161183974	2	4	124	1	0	0	0	0	0	0	0	1	10299	407	15	5		5	NDUFS2	1	161183974	Silent	SNP	A	TCGA-B0-4833-01A-01D-1373-10	83000303	161183974	88066647	5	7805											
RCOR3	55758	hgsc.bcm.edu;ucsc.edu	37	1	211451524	211451524	+	Silent	SNP	G	G	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	211451524	G	A	211451524	2	1	124	1	0	0	0	0	0	0	0	1	13197	1165	41	2		2	RCOR3	1	211451524	Silent	SNP	G	TCGA-B0-4833-01A-01D-1373-10	50267550	211451524	37799097	6	7806											
RBM34	23029	hgsc.bcm.edu	37	1	235324285	235324285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	235324285	C	A	235324285	3	1	124	1	0	0	0	0	1	0	0	0	13144	681	24	4	1202	4	RBM34	1	235324285	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10	23872761	235324285	13926336	7	7807											
CENPA	1058	hgsc.bcm.edu;ucsc.edu	37	2	27015010	27015010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	27015010	C	A	27015010	3	1	124	1	0	0	0	0	1	0	0	0	3228	594	21	4	118	4	CENPA	2	27015010	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		27015010	216184363	8	7808											
XPO1	7514	hgsc.bcm.edu;ucsc.edu	37	2	61753621	61753621	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	G	61753621	C	G	61753621	3	3	124	1	0	0	0	0	1	0	0	0	17457	680	24	4	3145	4	XPO1	2	61753621	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10	34738611	61753621	181445752	9	7809											
EIF2AK3	9451	hgsc.bcm.edu;ucsc.edu	37	2	88892812	88892812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	88892812	C	T	88892812	3	4	124	1	0	0	0	0	1	0	0	0	5000	661	23	1	2661	1	EIF2AK3	2	88892812	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10	27139191	88892812	154306561	10	7810											
CNGA3	1261	hgsc.bcm.edu;ucsc.edu	37	2	99013013	99013013	+	Silent	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	99013013	C	T	99013013	2	4	124	1	0	0	0	0	0	0	0	1	3600	842	30	2		2	CNGA3	2	99013013	Silent	SNP	C	TCGA-B0-4833-01A-01D-1373-10	10120201	99013013	144186360	11	7811											
MGAT5	4249	hgsc.bcm.edu;ucsc.edu	37	2	135160678	135160678	+	Silent	SNP	G	G	A	rs148494322	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	135160678	G	A	135160678	2	1	124	1	0	0	0	0	0	0	0	1	9555	1219	43	2		2	MGAT5	2	135160678	Silent	SNP	G	TCGA-B0-4833-01A-01D-1373-10	36147665	135160678	108038695	12	7812											
ZRANB3	84083	hgsc.bcm.edu;ucsc.edu	37	2	135988351	135988351	+	Silent	SNP	T	T	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	135988351	T	C	135988351	2	2	124	1	0	0	0	0	0	0	0	1	18236	1548	54	3		3	ZRANB3	2	135988351	Silent	SNP	T	TCGA-B0-4833-01A-01D-1373-10	827673	135988351	107211022	13	7813											
MBD5	55777	hgsc.bcm.edu;ucsc.edu	37	2	149226840	149226840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	149226840	T	C	149226840	3	2	124	1	0	0	0	0	1	0	0	0	9354	1696	59	3	1342	3	MBD5	2	149226840	Missense_Mutation	SNP	T	TCGA-B0-4833-01A-01D-1373-10	13238489	149226840	93972533	14	7814											
NEB	4703	hgsc.bcm.edu;ucsc.edu	37	2	152580850	152580850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	152580850	G	T	152580850	3	4	124	1	0	0	0	0	1	0	0	0	10309	1261	44	4	25850	4	NEB	2	152580850	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	3354010	152580850	90618523	15	7815											
SLC4A10	57282	hgsc.bcm.edu	37	2	162799352	162799352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	162799352	G	T	162799352	3	4	124	1	0	0	0	0	1	0	0	0	14664	1357	47	4	2195	4	SLC4A10	2	162799352	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	10218502	162799352	80400021	16	7816											
HGFAC	3083	hgsc.bcm.edu	37	4	3444511	3444511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	3444511	C	T	3444511	3	4	124	1	0	0	0	0	1	0	0	0	7093	565	20	2	176	2	HGFAC	4	3444511	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		3444511	187709765	17	7817											
D4S234E	0	hgsc.bcm.edu	37	4	4389386	4389386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	4389386	G	T	4389386	3	4	124	1	0	0	0	0	1	0	0	0	4216	933	33	4	32	4	D4S234E	4	4389386	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	944875	4389386	186764890	18	7818											
C4orf19	55286	hgsc.bcm.edu;ucsc.edu	37	4	37591832	37591832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	37591832	A	C	37591832	3	2	124	1	0	0	0	0	1	0	0	0	2255	188	7	5	161	5	C4orf19	4	37591832	Missense_Mutation	SNP	A	TCGA-B0-4833-01A-01D-1373-10	33202446	37591832	153562444	19	7819											
ADH1A	124	hgsc.bcm.edu;ucsc.edu	37	4	100205772	100205772	+	Silent	SNP	T	T	G	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	G	100205772	T	G	100205772	2	3	124	1	0	0	0	0	0	0	0	1	307	1741	61	5		5	ADH1A	4	100205772	Silent	SNP	T	TCGA-B0-4833-01A-01D-1373-10	62613940	100205772	90948504	20	7820											
CCDC111	201973	hgsc.bcm.edu	37	4	185599493	185599493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	G	185599493	A	G	185599493	3	3	124	1	0	0	0	0	1	0	0	0	2750	15	1	3	974	3	CCDC111	4	185599493	Missense_Mutation	SNP	A	TCGA-B0-4833-01A-01D-1373-10	85393721	185599493	5554783	21	7821											
HSPB3	8988	hgsc.bcm.edu;ucsc.edu	37	5	53751717	53751717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	53751717	C	T	53751717	3	4	124	1	0	0	0	0	1	0	0	0	7428	797	28	2	100	2	HSPB3	5	53751717	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		53751717	127163543	22	7822											
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	37	5	139865230	139865230	+	Silent	SNP	T	T	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	T	A	T	T	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	139865230	T	A	139865230	2	1	124	1	0	0	0	0	0	0	0	1	629	1596	56	5		5	ANKHD1-EIF4EBP3	5	139865230	Silent	SNP	T	TCGA-B0-4833-01A-01D-1373-10	86113513	139865230	41050030	23	7823											
GABRG2	2566	hgsc.bcm.edu;ucsc.edu	37	5	161576189	161576189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	161576189	C	T	161576189	3	4	124	1	0	0	0	0	1	0	0	0	6179	478	17	2	1152	2	GABRG2	5	161576189	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10	21710959	161576189	19339071	24	7824											
POLH	5429	hgsc.bcm.edu;ucsc.edu	37	6	43550136	43550136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	43550136	C	A	43550136	3	1	124	1	0	0	0	0	1	0	0	0	12209	681	24	4	82	4	POLH	6	43550136	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		43550136	127564931	25	7825											
IYD	389434	hgsc.bcm.edu;ucsc.edu	37	6	150719261	150719261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	150719261	G	A	150719261	3	1	124	1	0	0	0	0	1	0	0	0	7939	1087	38	1	953	1	IYD	6	150719261	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	107169125	150719261	20395806	26	7826											
SCRN1	9805	hgsc.bcm.edu;ucsc.edu	37	7	29994903	29994903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	29994903	C	A	29994903	3	1	124	1	0	0	0	0	1	0	0	0	13951	855	30	4	1035	4	SCRN1	7	29994903	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		29994903	129143760	27	7827											
C8orf34	116328	hgsc.bcm.edu;ucsc.edu	37	8	69351754	69351754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	G	69351754	A	G	69351754	3	3	124	1	0	0	0	0	1	0	0	0	2424	352	13	3	17	3	C8orf34	8	69351754	Missense_Mutation	SNP	A	TCGA-B0-4833-01A-01D-1373-10		69351754	77012268	28	7828											
UBR5	51366	hgsc.bcm.edu	37	8	103283417	103283417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	103283417	T	C	103283417	3	2	124	1	0	0	0	0	1	0	0	0	16917	1608	56	3	1413	3	UBR5	8	103283417	Missense_Mutation	SNP	T	TCGA-B0-4833-01A-01D-1373-10	33931663	103283417	43080605	29	7829											
PHRF1	57661	hgsc.bcm.edu;ucsc.edu	37	11	611078	611078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	611078	A	C	611078	3	2	124	1	0	0	0	0	1	0	0	0	11868	188	7	5	4861	5	PHRF1	11	611078	Missense_Mutation	SNP	A	TCGA-B0-4833-01A-01D-1373-10		611078	134395438	30	7830											
NAP1L4	4676	hgsc.bcm.edu;ucsc.edu	37	11	2997279	2997279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	2997279	G	A	2997279	3	1	124	1	0	0	0	0	1	0	0	0	10166	1290	45	2	1027	2	NAP1L4	11	2997279	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	2386201	2997279	132009237	31	7831											
LUZP2	338645	hgsc.bcm.edu;ucsc.edu	37	11	24753686	24753686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	G	24753686	C	G	24753686	3	3	124	1	0	0	0	0	1	0	0	0	9094	913	32	4	213	4	LUZP2	11	24753686	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10	21756407	24753686	110252830	32	7832											
MADD	8567	hgsc.bcm.edu;ucsc.edu	37	11	47330867	47330867	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	G	47330867	T	G	47330867	3	3	124	1	0	0	0	0	1	0	0	0	9159	1493	52	5	4069	5	MADD	11	47330867	Missense_Mutation	SNP	T	TCGA-B0-4833-01A-01D-1373-10	22577181	47330867	87675649	33	7833											
MYBPC3	4607	hgsc.bcm.edu;ucsc.edu	37	11	47371574	47371574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	47371574	C	T	47371574	3	4	124	1	0	0	0	0	1	0	0	0	10020	507	18	2	3445	2	MYBPC3	11	47371574	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10	40707	47371574	87634942	34	7834											
GYS2	2998	hgsc.bcm.edu;ucsc.edu	37	12	21699315	21699315	+	Silent	SNP	T	T	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	21699315	T	A	21699315	2	1	124	1	0	0	0	0	0	0	0	1	6920	1393	49	5		5	GYS2	12	21699315	Silent	SNP	T	TCGA-B0-4833-01A-01D-1373-10		21699315	112152580	35	7835											
LIMA1	51474	hgsc.bcm.edu;ucsc.edu	37	12	50642463	50642463	+	Silent	SNP	A	A	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	50642463	A	C	50642463	2	2	124	1	0	0	0	0	0	0	0	1	8803	291	11	5		5	LIMA1	12	50642463	Silent	SNP	A	TCGA-B0-4833-01A-01D-1373-10	28943148	50642463	83209432	36	7836											
ZBTB39	9880	hgsc.bcm.edu;ucsc.edu	37	12	57396664	57396664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	57396664	C	T	57396664	3	4	124	1	0	0	0	0	1	0	0	0	17552	478	17	2	104	2	ZBTB39	12	57396664	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10	6754201	57396664	76455231	37	7837											
SLC41A2	84102	hgsc.bcm.edu;ucsc.edu	37	12	105239709	105239709	+	Silent	SNP	A	A	G	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	G	105239709	A	G	105239709	2	3	124	1	0	0	0	0	0	0	0	1	14643	407	15	3		3	SLC41A2	12	105239709	Silent	SNP	A	TCGA-B0-4833-01A-01D-1373-10	47843045	105239709	28612186	38	7838											
TMTC4	84899	hgsc.bcm.edu;ucsc.edu	37	13	101277909	101277909	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	101277909	C	T	101277909	4	4	124	1	0	0	0	0	0	1	0	0	16275	856	30	2	586	2	TMTC4	13	101277909	Nonsense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		101277909	13891969	39	7839											
FLJ10357	0	hgsc.bcm.edu;ucsc.edu	37	14	21553992	21553992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	21553992	C	A	21553992	3	1	124	1	0	0	0	0	1	0	0	0	5933	595	21	4	4179	4	FLJ10357	14	21553992	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		21553992	85795548	40	7840											
THBS1	7057	hgsc.bcm.edu	37	15	39879677	39879677	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	39879677	C	A	39879677	4	1	124	1	0	0	0	0	0	1	0	0	15865	893	31	4	1276	4	THBS1	15	39879677	Nonsense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		39879677	62651715	41	7841											
DMXL2	23312	hgsc.bcm.edu;ucsc.edu	37	15	51773209	51773209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	51773209	C	A	51773209	3	1	124	1	0	0	0	0	1	0	0	0	4597	826	29	4	3099	4	DMXL2	15	51773209	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10	11893532	51773209	50758183	42	7842											
SCG3	29106	hgsc.bcm.edu	37	15	51993432	51993432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	51993432	G	A	51993432	3	1	124	1	0	0	0	0	1	0	0	0	13905	1291	45	2	1236	2	SCG3	15	51993432	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	220223	51993432	50537960	43	7843											
CSNK1G1	53944	hgsc.bcm.edu;ucsc.edu	37	15	64472640	64472641	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	64472641	-	T	64472640	7	5	124	1	0	1	1	0	0	0	0	0	3956	1261	44	0	155	0	CSNK1G1	15	64472640	Frame_Shift_Ins	INS	-	TCGA-B0-4833-01A-01D-1373-10	12479208	64472640	38058752	44	7844											
FAM86A	196483	hgsc.bcm.edu;ucsc.edu	37	16	5143526	5143526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	5143526	C	T	5143526	3	4	124	1	0	0	0	0	1	0	0	0	5650	536	19	1	817	1	FAM86A	16	5143526	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		5143526	85211227	45	7845											
TAOK2	9344	hgsc.bcm.edu;ucsc.edu	37	16	29989603	29989603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	29989603	T	C	29989603	3	2	124	1	0	0	0	0	1	0	0	0	15560	1725	60	3	245	3	TAOK2	16	29989603	Missense_Mutation	SNP	T	TCGA-B0-4833-01A-01D-1373-10	24846077	29989603	60365150	46	7846											
MMP2	4313	hgsc.bcm.edu;ucsc.edu	37	16	55525713	55525713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	55525713	G	A	55525713	3	1	124	1	0	0	0	0	1	0	0	0	9665	1246	43	2	1218	2	MMP2	16	55525713	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	25536110	55525713	34829040	47	7847											
KARS	3735	hgsc.bcm.edu;ucsc.edu	37	16	75675563	75675563	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	75675563	T	A	75675563	4	1	124	1	0	0	0	0	0	1	0	0	7987	1792	62	5	1724	5	KARS	16	75675563	Nonsense_Mutation	SNP	T	TCGA-B0-4833-01A-01D-1373-10	20149850	75675563	14679190	48	7848											
KSR1	8844	hgsc.bcm.edu;ucsc.edu	37	17	25936231	25936231	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	25936231	T	A	25936231	3	1	124	1	0	0	0	0	1	0	0	0	8588	1406	49	5	1810	5	KSR1	17	25936231	Missense_Mutation	SNP	T	TCGA-B0-4833-01A-01D-1373-10		25936231	55258979	49	7849											
KRT35	3886	hgsc.bcm.edu;ucsc.edu	37	17	39635663	39635663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	39635663	T	C	39635663	3	2	124	1	0	0	0	0	1	0	0	0	8479	1667	58	3	740	3	KRT35	17	39635663	Missense_Mutation	SNP	T	TCGA-B0-4833-01A-01D-1373-10	13699432	39635663	41559547	50	7850											
ACLY	47	hgsc.bcm.edu;ucsc.edu	37	17	40039402	40039402	+	Silent	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	40039402	C	T	40039402	2	4	124	1	0	0	0	0	0	0	0	1	143	842	30	2		2	ACLY	17	40039402	Silent	SNP	C	TCGA-B0-4833-01A-01D-1373-10	403739	40039402	41155808	51	7851											
CA10	56934	hgsc.bcm.edu;ucsc.edu	37	17	49726559	49726559	+	Silent	SNP	T	T	G	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	G	49726559	T	G	49726559	2	3	124	1	0	0	0	0	0	0	0	1	2513	1799	63	5		5	CA10	17	49726559	Silent	SNP	T	TCGA-B0-4833-01A-01D-1373-10	9687157	49726559	31468651	52	7852											
LPPR3	79948	hgsc.bcm.edu	37	19	821530	821530	+	Silent	SNP	G	G	A	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	A	821530	G	A	821530	2	1	124	1	0	0	0	0	0	0	0	1	8933	1164	41	2		2	LPPR3	19	821530	Silent	SNP	G	TCGA-B0-4833-01A-01D-1373-10		821530	58307453	53	7853											
PIP5K1C	23396	hgsc.bcm.edu;ucsc.edu	37	19	3641752	3641752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	3641752	C	T	3641752	3	4	124	1	0	0	0	0	1	0	0	0	11948	864	30	2	284	2	PIP5K1C	19	3641752	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10	2820222	3641752	55487231	54	7854											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9059304	9059304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	9059304	G	T	9059304	3	4	124	1	0	0	0	0	1	0	0	0	9980	1261	44	4	15709	4	MUC16	19	9059304	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	5417552	9059304	50069679	55	7855											
TNPO2	30000	hgsc.bcm.edu;ucsc.edu	37	19	12829966	12829966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	12829966	G	C	12829966	3	2	124	1	0	0	0	0	1	0	0	0	16348	1000	35	4	2575	4	TNPO2	19	12829966	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	3770662	12829966	46299017	56	7856											
SMOX	54498	hgsc.bcm.edu	37	20	4158152	4158152	+	Silent	SNP	C	C	G	rs6107418	bycluster;byfrequency;by1000genomes	TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	G	4158152	C	G	4158152	2	3	124	1	0	0	0	0	0	0	0	1	14816	668	24	4		4	SMOX	20	4158152	Silent	SNP	C	TCGA-B0-4833-01A-01D-1373-10		4158152	58867368	57	7857											
C20orf79	0	hgsc.bcm.edu;ucsc.edu	37	20	18794787	18794787	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	18794787	A	T	18794787	3	4	124	1	0	0	0	0	1	0	0	0	2121	101	4	5	330	5	C20orf79	20	18794787	Missense_Mutation	SNP	A	TCGA-B0-4833-01A-01D-1373-10	14636635	18794787	44230733	58	7858											
XRN2	22803	hgsc.bcm.edu	37	20	21314823	21314823	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	C	21314823	G	C	21314823	3	2	124	1	0	0	0	0	1	0	0	0	17472	1014	35	4	1283	4	XRN2	20	21314823	Missense_Mutation	SNP	G	TCGA-B0-4833-01A-01D-1373-10	2520036	21314823	41710697	59	7859											
GAB4	128954	hgsc.bcm.edu	37	22	17472817	17472817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	17472817	C	T	17472817	3	4	124	1	0	0	0	0	1	0	0	0	6158	835	29	2	1336	2	GAB4	22	17472817	Missense_Mutation	SNP	C	TCGA-B0-4833-01A-01D-1373-10		17472817	33831749	60	7860											
CD99	4267	hgsc.bcm.edu	37	X	2640714	2640714	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	2640714	A	T	2640714	3	4	124	1	0	0	0	0	1	0	0	0	3052	86	3	5	331	5	CD99	23	2640714	Missense_Mutation	SNP	A	TCGA-B0-4833-01A-01D-1373-10		2640714	152629846	61	7861											
CD99L2	83692	hgsc.bcm.edu;ucsc.edu	37	X	149963727	149963727	+	Silent	SNP	G	G	T	novel		TCGA-B0-4833-01A-01D-1373-10	TCGA-B0-4833-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dcdaa6ac-5b93-4c10-a2e0-2833d22d6e33	1123df3c-3b31-4cbb-a882-62bf66676e1e	T	149963727	G	T	149963727	2	4	124	1	0	0	0	0	0	0	0	1	3053	1066	37	4		4	CD99L2	23	149963727	Silent	SNP	G	TCGA-B0-4833-01A-01D-1373-10	147323013	149963727	5306833	62	7862											
VHL	7428	hgsc.bcm.edu	37	3	10183749	10183750	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4833-01A-01W-1369-10	TCGA-B0-4833-11A-01W-1369-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	af3730c7-3843-41a1-ab79-9a4ad490f44f	a66c6d9c-b480-4268-882f-f99d7ff875b9	G	10183750	-	G	10183749	7	5	125	1	0	1	1	0	0	0	0	0	17174	188	7	0	220	0	VHL	3	10183749	Frame_Shift_Ins	INS	-	TCGA-B0-4833-01A-01W-1369-10		10183749	187838681	1	7863											
CHD5	26038	hgsc.bcm.edu;ucsc.edu	37	1	6228284	6228284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	T	6228284	C	T	6228284	3	4	126	1	0	0	0	0	1	0	0	0	3330	536	19	1	5891	1	CHD5	1	6228284	Missense_Mutation	SNP	C	TCGA-B0-4836-01A-01D-1373-10		6228284	243022337	1	7864											
RTCD1	0	hgsc.bcm.edu;ucsc.edu	37	1	100741273	100741273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	A	100741273	G	A	100741273	3	1	126	1	0	0	0	0	1	0	0	0	13731	1174	41	2	803	2	RTCD1	1	100741273	Missense_Mutation	SNP	G	TCGA-B0-4836-01A-01D-1373-10	94512989	100741273	148509348	2	7865											
SLC22A15	55356	hgsc.bcm.edu	37	1	116534699	116534699	+	Silent	SNP	G	G	C	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	C	116534699	G	C	116534699	2	2	126	1	0	0	0	0	0	0	0	1	14459	1074	38	4		4	SLC22A15	1	116534699	Silent	SNP	G	TCGA-B0-4836-01A-01D-1373-10	15793426	116534699	132715922	3	7866											
MAT2A	4144	hgsc.bcm.edu;ucsc.edu	37	2	85769804	85769804	+	Silent	SNP	T	T	C	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	C	85769804	T	C	85769804	2	2	126	1	0	0	0	0	0	0	0	1	9337	1596	56	3		3	MAT2A	2	85769804	Silent	SNP	T	TCGA-B0-4836-01A-01D-1373-10		85769804	157429569	4	7867											
SNED1	25992	hgsc.bcm.edu	37	2	241991875	241991875	+	Silent	SNP	G	G	A	rs57214830	bycluster;by1000genomes	TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	A	241991875	G	A	241991875	2	1	126	1	0	0	0	0	0	0	0	1	14858	1248	44	2		2	SNED1	2	241991875	Silent	SNP	G	TCGA-B0-4836-01A-01D-1373-10	156222071	241991875	1207498	5	7868											
DLEC1	9940	hgsc.bcm.edu	37	3	38139284	38139284	+	Missense_Mutation	SNP	G	G	C	rs183009787	by1000genomes;alternate_allele	TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	C	38139284	G	C	38139284	3	2	126	1	0	0	0	0	1	0	0	0	4554	1087	38	4	2685	4	DLEC1	3	38139284	Missense_Mutation	SNP	G	TCGA-B0-4836-01A-01D-1373-10		38139284	159883146	6	7869											
KBTBD12	166348	hgsc.bcm.edu;ucsc.edu	37	3	127642834	127642834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	G	127642834	C	G	127642834	3	3	126	1	0	0	0	0	1	0	0	0	7998	825	29	4	932	4	KBTBD12	3	127642834	Missense_Mutation	SNP	C	TCGA-B0-4836-01A-01D-1373-10	89503550	127642834	70379596	7	7870											
NAA15	80155	hgsc.bcm.edu;ucsc.edu	37	4	140282956	140282956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	A	140282956	G	A	140282956	3	1	126	1	0	0	0	0	1	0	0	0	10125	1174	41	2	1672	2	NAA15	4	140282956	Missense_Mutation	SNP	G	TCGA-B0-4836-01A-01D-1373-10		140282956	50871320	8	7871											
RAPGEF6	51735	hgsc.bcm.edu	37	5	130815212	130815212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	G	130815212	A	G	130815212	3	3	126	1	0	0	0	0	1	0	0	0	13061	420	15	3	3268	3	RAPGEF6	5	130815212	Missense_Mutation	SNP	A	TCGA-B0-4836-01A-01D-1373-10		130815212	50100048	9	7872											
FAM153C	653316	hgsc.bcm.edu	37	5	177473898	177473899	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	-	177473899	CT	-	177473898	7	5	126	1	0	1	0	1	0	0	0	0	5466	681	24	0	329	0	FAM153C	5	177473898	Frame_Shift_Del	DEL	CT	TCGA-B0-4836-01A-01D-1373-10	46658686	177473898	3441362	10	7873											
KIAA0240	0	hgsc.bcm.edu;ucsc.edu	37	6	42832830	42832830	+	Silent	SNP	G	G	T	rs140608307	byfrequency;alternate_allele	TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	T	42832830	G	T	42832830	2	4	126	1	0	0	0	0	0	0	0	1	8171	1074	38	4		4	KIAA0240	6	42832830	Silent	SNP	G	TCGA-B0-4836-01A-01D-1373-10		42832830	128282237	11	7874											
PKHD1	5314	hgsc.bcm.edu	37	6	51524622	51524622	+	Silent	SNP	A	A	G	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	G	51524622	A	G	51524622	2	3	126	1	0	0	0	0	0	0	0	1	11978	407	15	3		3	PKHD1	6	51524622	Silent	SNP	A	TCGA-B0-4836-01A-01D-1373-10	8691792	51524622	119590445	12	7875											
UNC93A	54346	hgsc.bcm.edu;ucsc.edu	37	6	167705042	167705042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	G	167705042	A	G	167705042	3	3	126	1	0	0	0	0	1	0	0	0	17008	449	16	3	67	3	UNC93A	6	167705042	Missense_Mutation	SNP	A	TCGA-B0-4836-01A-01D-1373-10	116180420	167705042	3410025	13	7876											
SLC18A2	6571	hgsc.bcm.edu	37	10	119029905	119029905	+	Silent	SNP	G	G	T	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	T	119029905	G	T	119029905	2	4	126	1	0	0	0	0	0	0	0	1	14439	1161	41	4		4	SLC18A2	10	119029905	Silent	SNP	G	TCGA-B0-4836-01A-01D-1373-10		119029905	16504842	14	7877											
TTC17	55761	hgsc.bcm.edu	37	11	43427495	43427495	+	Silent	SNP	A	A	C	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	C	43427495	A	C	43427495	2	2	126	1	0	0	0	0	0	0	0	1	16696	146	6	5		5	TTC17	11	43427495	Silent	SNP	A	TCGA-B0-4836-01A-01D-1373-10		43427495	91579021	15	7878											
C11orf85	283129	hgsc.bcm.edu	37	11	64717341	64717341	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	T	64717341	C	T	64717341	5	4	126	1	0	0	0	0	0	0	1	0	1670	927	32	2	447	2	C11orf85	11	64717341	Splice_Site	SNP	C	TCGA-B0-4836-01A-01D-1373-10	21289846	64717341	70289175	16	7879											
UHRF1BP1L	23074	hgsc.bcm.edu;ucsc.edu	37	12	100433530	100433530	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	G	100433530	T	G	100433530	3	3	126	1	0	0	0	0	1	0	0	0	16981	1838	64	5	283	5	UHRF1BP1L	12	100433530	Missense_Mutation	SNP	T	TCGA-B0-4836-01A-01D-1373-10		100433530	33418365	17	7880											
SLITRK6	84189	hgsc.bcm.edu;ucsc.edu	37	13	86369855	86369855	+	Silent	SNP	C	C	T	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	T	86369855	C	T	86369855	2	4	126	1	0	0	0	0	0	0	0	1	14760	680	24	2		2	SLITRK6	13	86369855	Silent	SNP	C	TCGA-B0-4836-01A-01D-1373-10		86369855	28800023	18	7881											
FSCB	84075	hgsc.bcm.edu	37	14	44973866	44973866	+	Silent	SNP	C	C	A	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	A	44973866	C	A	44973866	2	1	126	1	0	0	0	0	0	0	0	1	6073	639	23	4		4	FSCB	14	44973866	Silent	SNP	C	TCGA-B0-4836-01A-01D-1373-10		44973866	62375674	19	7882											
CIITA	4261	hgsc.bcm.edu;ucsc.edu	37	16	10997702	10997702	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	T	10997702	A	T	10997702	3	4	126	1	0	0	0	0	1	0	0	0	3430	275	10	5	921	5	CIITA	16	10997702	Missense_Mutation	SNP	A	TCGA-B0-4836-01A-01D-1373-10		10997702	79357051	20	7883											
KCTD19	146212	hgsc.bcm.edu	37	16	67327642	67327642	+	Missense_Mutation	SNP	C	C	T	rs145649592	by1000genomes	TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	T	67327642	C	T	67327642	3	4	126	1	0	0	0	0	1	0	0	0	8113	893	31	1	777	1	KCTD19	16	67327642	Missense_Mutation	SNP	C	TCGA-B0-4836-01A-01D-1373-10	56329940	67327642	23027111	21	7884											
RANGRF	29098	hgsc.bcm.edu	37	17	8193196	8193196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	G	8193196	T	G	8193196	3	3	126	1	0	0	0	0	1	0	0	0	13047	1841	64	5	609	5	RANGRF	17	8193196	Missense_Mutation	SNP	T	TCGA-B0-4836-01A-01D-1373-10		8193196	73002014	22	7885											
FLII	2314	hgsc.bcm.edu	37	17	18156613	18156613	+	Splice_Site	SNP	A	A	C	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	C	18156613	A	C	18156613	5	2	126	1	0	0	0	0	0	0	1	0	5932	173	6	5	2882	5	FLII	17	18156613	Splice_Site	SNP	A	TCGA-B0-4836-01A-01D-1373-10	9963417	18156613	63038597	23	7886											
MYCBPAP	84073	hgsc.bcm.edu;ucsc.edu	37	17	48600354	48600354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	C	48600354	A	C	48600354	3	2	126	1	0	0	0	0	1	0	0	0	10026	43	2	5	1483	5	MYCBPAP	17	48600354	Missense_Mutation	SNP	A	TCGA-B0-4836-01A-01D-1373-10	30443741	48600354	32594856	24	7887											
FAM187B	148109	hgsc.bcm.edu	37	19	35719577	35719577	+	Missense_Mutation	SNP	G	G	A	rs34873156	bycluster;byfrequency;by1000genomes	TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	A	35719577	G	A	35719577	3	1	126	1	0	0	0	0	1	0	0	0	5517	1261	44	2	1110	2	FAM187B	19	35719577	Missense_Mutation	SNP	G	TCGA-B0-4836-01A-01D-1373-10		35719577	23409406	25	7888											
ZNF343	79175	hgsc.bcm.edu;ucsc.edu	37	20	2464883	2464883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	A	2464883	T	A	2464883	3	1	126	1	0	0	0	0	1	0	0	0	17870	1812	63	5	1079	5	ZNF343	20	2464883	Missense_Mutation	SNP	T	TCGA-B0-4836-01A-01D-1373-10		2464883	60560637	26	7889											
ASMTL	8623	hgsc.bcm.edu	37	X	1537002	1537002	+	Silent	SNP	C	C	G	rs71298853	alternate_allele	TCGA-B0-4836-01A-01D-1373-10	TCGA-B0-4836-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9ae185e8-5361-48e7-932e-618ffb3fa8a4	797b658e-45e3-4663-a14d-272a16f7e321	G	1537002	C	G	1537002	2	3	126	1	0	0	0	0	0	0	0	1	1046	639	23	4		4	ASMTL	23	1537002	Silent	SNP	C	TCGA-B0-4836-01A-01D-1373-10		1537002	153733558	27	7890											
PLCH2	9651	hgsc.bcm.edu	37	1	2421272	2421272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	2421272	A	T	2421272	3	4	127	1	0	0	0	0	1	0	0	0	12045	304	11	5	1519	5	PLCH2	1	2421272	Missense_Mutation	SNP	A	TCGA-B0-4837-01A-01D-1373-10		2421272	246829349	1	7891											
CHD5	26038	hgsc.bcm.edu	37	1	6171886	6171886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	C	6171886	T	C	6171886	3	2	127	1	0	0	0	0	1	0	0	0	3330	1638	57	3	690	3	CHD5	1	6171886	Missense_Mutation	SNP	T	TCGA-B0-4837-01A-01D-1373-10	3750614	6171886	243078735	2	7892											
ABCA4	24	hgsc.bcm.edu;ucsc.edu	37	1	94568673	94568673	+	Silent	SNP	G	G	T	rs148091207	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	94568673	G	T	94568673	2	4	127	1	0	0	0	0	0	0	0	1	34	932	33	4		4	ABCA4	1	94568673	Silent	SNP	G	TCGA-B0-4837-01A-01D-1373-10	88396787	94568673	154681948	3	7893											
NRBP1	29959	hgsc.bcm.edu;ucsc.edu	37	2	27663325	27663325	+	Silent	SNP	C	C	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	27663325	C	T	27663325	2	4	127	1	0	0	0	0	0	0	0	1	10649	639	23	1		1	NRBP1	2	27663325	Silent	SNP	C	TCGA-B0-4837-01A-01D-1373-10		27663325	215536048	4	7894											
NFE2L2	4780	hgsc.bcm.edu;ucsc.edu	37	2	178098945	178098945	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	C	178098945	G	C	178098945	3	2	127	1	0	0	0	0	1	0	0	0	10375	1066	37	4	1733	4	NFE2L2	2	178098945	Missense_Mutation	SNP	G	TCGA-B0-4837-01A-01D-1373-10	150435620	178098945	65100428	5	7895											
SETD2	29072	ucsc.edu	37	3	47059132	47059132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	C	G	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	47059132	C	G	47059132	3	3	127	1	0	0	0	0	1	0	0	0	14144	768	27	4	173	4	SETD2	3	47059132	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10		47059132	150963298	6	7896											
PRKCD	5580	hgsc.bcm.edu	37	3	53219628	53219628	+	Silent	SNP	C	C	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	53219628	C	T	53219628	2	4	127	1	0	0	0	0	0	0	0	1	12519	610	22	2		2	PRKCD	3	53219628	Silent	SNP	C	TCGA-B0-4837-01A-01D-1373-10	6160496	53219628	144802802	7	7897											
MASP1	5648	hgsc.bcm.edu;ucsc.edu	37	3	186937985	186937985	+	Silent	SNP	G	G	A	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	186937985	G	A	186937985	2	1	127	1	0	0	0	0	0	0	0	1	9329	1190	42	2		2	MASP1	3	186937985	Silent	SNP	G	TCGA-B0-4837-01A-01D-1373-10	133718357	186937985	11084445	8	7898											
RGS12	6002	hgsc.bcm.edu;ucsc.edu	37	4	3432133	3432133	+	Splice_Site	SNP	G	G	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	3432133	G	T	3432133	5	4	127	1	0	0	0	0	0	0	1	0	13308	956	33	4	3685	4	RGS12	4	3432133	Splice_Site	SNP	G	TCGA-B0-4837-01A-01D-1373-10		3432133	187722143	9	7899											
KLHL5	51088	hgsc.bcm.edu;ucsc.edu	37	4	39116919	39116919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	39116919	C	T	39116919	3	4	127	1	0	0	0	0	1	0	0	0	8399	797	28	2	2218	2	KLHL5	4	39116919	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10	35684786	39116919	152037357	10	7900											
ANKRD17	26057	hgsc.bcm.edu;ucsc.edu	37	4	74021354	74021354	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	74021354	A	T	74021354	3	4	127	1	0	0	0	0	1	0	0	0	646	246	9	5	6937	5	ANKRD17	4	74021354	Missense_Mutation	SNP	A	TCGA-B0-4837-01A-01D-1373-10	34904435	74021354	117132922	11	7901											
ANK2	287	hgsc.bcm.edu	37	4	114179233	114179233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	C	114179233	T	C	114179233	3	2	127	1	0	0	0	0	1	0	0	0	621	1580	55	3	1287	3	ANK2	4	114179233	Missense_Mutation	SNP	T	TCGA-B0-4837-01A-01D-1373-10	40157879	114179233	76975043	12	7902											
DNAH5	1767	hgsc.bcm.edu;ucsc.edu	37	5	13830726	13830726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	13830726	C	A	13830726	3	1	127	1	0	0	0	0	1	0	0	0	4606	855	30	4	8009	4	DNAH5	5	13830726	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10		13830726	167084534	13	7903											
FBXO4	26272	hgsc.bcm.edu;ucsc.edu	37	5	41929897	41929897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	41929897	A	G	41929897	3	3	127	1	0	0	0	0	1	0	0	0	5755	101	4	3	534	3	FBXO4	5	41929897	Missense_Mutation	SNP	A	TCGA-B0-4837-01A-01D-1373-10	28099171	41929897	138985363	14	7904											
POLH	5429	hgsc.bcm.edu;ucsc.edu	37	6	43550779	43550779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	43550779	G	T	43550779	3	4	127	1	0	0	0	0	1	0	0	0	12209	1174	41	4	179	4	POLH	6	43550779	Missense_Mutation	SNP	G	TCGA-B0-4837-01A-01D-1373-10		43550779	127564288	15	7905											
ZNF292	23036	hgsc.bcm.edu	37	6	87966157	87966157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	87966157	T	A	87966157	3	1	127	1	0	0	0	0	1	0	0	0	17838	1696	59	5	2840	5	ZNF292	6	87966157	Missense_Mutation	SNP	T	TCGA-B0-4837-01A-01D-1373-10	44415378	87966157	83148910	16	7906											
IGFBP3	3486	hgsc.bcm.edu	37	7	45957039	45957039	+	Splice_Site	SNP	C	C	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	45957039	C	G	45957039	5	3	127	1	0	0	0	0	0	0	1	0	7587	695	24	4	484	4	IGFBP3	7	45957039	Splice_Site	SNP	C	TCGA-B0-4837-01A-01D-1373-10		45957039	113181624	17	7907											
USP17L2	377630	hgsc.bcm.edu	37	8	11995987	11995987	+	Silent	SNP	G	A	A	rs3988861	bycluster	TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	11995987	A	A	11995987	2	1	127	1	0	0	0	0	0	0	0	1	17060	991	35	2		2	USP17L2	8	11995987	Silent	SNP	G	TCGA-B0-4837-01A-01D-1373-10		11995987	134368035	18	7908											
PUF60	22827	hgsc.bcm.edu;ucsc.edu	37	8	144898831	144898831	+	Silent	SNP	G	G	C	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	C	144898831	G	C	144898831	2	2	127	1	0	0	0	0	0	0	0	1	12837	1277	45	4		4	PUF60	8	144898831	Silent	SNP	G	TCGA-B0-4837-01A-01D-1373-10	132902844	144898831	1465191	19	7909											
KIAA2026	158358	hgsc.bcm.edu;ucsc.edu	37	9	5968196	5968196	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	5968196	T	A	5968196	4	1	127	1	0	0	0	0	0	1	0	0	8277	1763	61	5	4300	5	KIAA2026	9	5968196	Nonsense_Mutation	SNP	T	TCGA-B0-4837-01A-01D-1373-10		5968196	135245235	20	7910											
TIMM23	100287932	hgsc.bcm.edu;ucsc.edu	37	10	51592504	51592504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	C	51592504	T	C	51592504	3	2	127	1	0	0	0	0	1	0	0	0	15923	1796	62	3	3	3	TIMM23	10	51592504	Missense_Mutation	SNP	T	TCGA-B0-4837-01A-01D-1373-10		51592504	83942243	21	7911											
PNLIPRP2	5408	hgsc.bcm.edu	37	10	118383462	118383463	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	118383463	-	A	118383462	7	5	127	1	0	1	1	0	0	0	0	0	12158	943	33	0	68	0	PNLIPRP2	10	118383462	Frame_Shift_Ins	INS	-	TCGA-B0-4837-01A-01D-1373-10	66790958	118383462	17151285	22	7912											
TRIM22	10346	hgsc.bcm.edu;ucsc.edu	37	11	5717667	5717667	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	5717667	C	T	5717667	4	4	127	1	0	0	0	0	0	1	0	0	16508	644	23	1	207	1	TRIM22	11	5717667	Nonsense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10		5717667	129288849	23	7913											
FAM160A2	84067	hgsc.bcm.edu	37	11	6239139	6239139	+	Silent	SNP	A	A	G	rs11040809	bycluster;byfrequency;by1000genomes	TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	6239139	A	G	6239139	2	3	127	1	0	0	0	0	0	0	0	1	5473	262	10	3		3	FAM160A2	11	6239139	Silent	SNP	A	TCGA-B0-4837-01A-01D-1373-10	521472	6239139	128767377	24	7914											
RTN3	10313	hgsc.bcm.edu;ucsc.edu	37	11	63486754	63486754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	C	63486754	A	C	63486754	3	2	127	1	0	0	0	0	1	0	0	0	13740	98	4	5	790	5	RTN3	11	63486754	Missense_Mutation	SNP	A	TCGA-B0-4837-01A-01D-1373-10	57247615	63486754	71519762	25	7915											
MMP10	4319	hgsc.bcm.edu;ucsc.edu	37	11	102650297	102650297	+	Silent	SNP	G	G	A	rs140654514	bycluster;byfrequency;by1000genomes	TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	102650297	G	A	102650297	2	1	127	1	0	0	0	0	0	0	0	1	9656	1136	40	1		1	MMP10	11	102650297	Silent	SNP	G	TCGA-B0-4837-01A-01D-1373-10	39163543	102650297	32356219	26	7916											
SORL1	6653	hgsc.bcm.edu	37	11	121483478	121483478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	C	121483478	T	C	121483478	3	2	127	1	0	0	0	0	1	0	0	0	14947	1493	52	3	5514	3	SORL1	11	121483478	Missense_Mutation	SNP	T	TCGA-B0-4837-01A-01D-1373-10	18833181	121483478	13523038	27	7917											
KIAA1467	57613	hgsc.bcm.edu;ucsc.edu	37	12	13208556	13208556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	13208556	C	G	13208556	3	3	127	1	0	0	0	0	1	0	0	0	8242	912	32	4	115	4	KIAA1467	12	13208556	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10		13208556	120643339	28	7918											
KIAA1467	57613	hgsc.bcm.edu;ucsc.edu	37	12	13224254	13224254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	13224254	C	G	13224254	3	3	127	1	0	0	0	0	1	0	0	0	8242	507	18	4	1486	4	KIAA1467	12	13224254	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10	15698	13224254	120627641	29	7919											
DBX2	440097	hgsc.bcm.edu;ucsc.edu	37	12	45429899	45429899	+	Splice_Site	SNP	T	T	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	45429899	T	G	45429899	5	3	127	1	0	0	0	0	0	0	1	0	4262	1594	55	5	629	5	DBX2	12	45429899	Splice_Site	SNP	T	TCGA-B0-4837-01A-01D-1373-10	32205645	45429899	88421996	30	7920											
ESYT1	23344	hgsc.bcm.edu;ucsc.edu	37	12	56531335	56531335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	56531335	G	A	56531335	3	1	127	1	0	0	0	0	1	0	0	0	5266	1145	40	1	2091	1	ESYT1	12	56531335	Missense_Mutation	SNP	G	TCGA-B0-4837-01A-01D-1373-10	11101436	56531335	77320560	31	7921											
TIMELESS	8914	hgsc.bcm.edu;ucsc.edu	37	12	56814823	56814823	+	Silent	SNP	C	C	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	56814823	C	G	56814823	2	3	127	1	0	0	0	0	0	0	0	1	15916	610	22	4		4	TIMELESS	12	56814823	Silent	SNP	C	TCGA-B0-4837-01A-01D-1373-10	283488	56814823	77037072	32	7922											
MYH11	4629	hgsc.bcm.edu;ucsc.edu	37	16	15932004	15932004	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	15932004	C	G	15932004	3	3	127	1	0	0	0	0	1	0	0	0	10038	536	19	4	6032	4	MYH11	16	15932004	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10		15932004	74422749	33	7923											
SYT17	51760	hgsc.bcm.edu	37	16	19195087	19195087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	19195087	T	G	19195087	3	3	127	1	0	0	0	0	1	0	0	0	15485	1783	62	5	587	5	SYT17	16	19195087	Missense_Mutation	SNP	T	TCGA-B0-4837-01A-01D-1373-10	3263083	19195087	71159666	34	7924											
CDH8	1006	hgsc.bcm.edu;ucsc.edu	37	16	61687743	61687743	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	61687743	T	G	61687743	3	3	127	1	0	0	0	0	1	0	0	0	3118	1490	52	5	234	5	CDH8	16	61687743	Missense_Mutation	SNP	T	TCGA-B0-4837-01A-01D-1373-10	42492656	61687743	28667010	35	7925											
PRPF8	10594	hgsc.bcm.edu	37	17	1584776	1584776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	C	1584776	G	C	1584776	3	2	127	1	0	0	0	0	1	0	0	0	12585	991	35	4	6297	4	PRPF8	17	1584776	Missense_Mutation	SNP	G	TCGA-B0-4837-01A-01D-1373-10		1584776	79610434	36	7926											
SPEM1	374768	hgsc.bcm.edu;ucsc.edu	37	17	7324560	7324560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	7324560	C	T	7324560	3	4	127	1	0	0	0	0	1	0	0	0	15049	623	22	2	576	2	SPEM1	17	7324560	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10	5739784	7324560	73870650	37	7927											
TNS4	84951	hgsc.bcm.edu	37	17	38652467	38652467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	38652467	G	T	38652467	3	4	127	1	0	0	0	0	1	0	0	0	16357	1386	48	4	1984	4	TNS4	17	38652467	Missense_Mutation	SNP	G	TCGA-B0-4837-01A-01D-1373-10	31327907	38652467	42542743	38	7928											
ABCC3	8714	hgsc.bcm.edu;ucsc.edu	37	17	48765029	48765029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	C	48765029	G	C	48765029	3	2	127	1	0	0	0	0	1	0	0	0	54	1020	36	4	4615	4	ABCC3	17	48765029	Missense_Mutation	SNP	G	TCGA-B0-4837-01A-01D-1373-10	10112562	48765029	32430181	39	7929											
FHOD3	80206	hgsc.bcm.edu	37	18	34191947	34191947	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	34191947	C	G	34191947	3	3	127	1	0	0	0	0	1	0	0	0	5890	912	32	4	880	4	FHOD3	18	34191947	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10		34191947	43885301	40	7930											
CCDC68	80323	hgsc.bcm.edu;ucsc.edu	37	18	52610015	52610015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	T	52610015	G	T	52610015	3	4	127	1	0	0	0	0	1	0	0	0	2842	1377	48	4	1039	4	CCDC68	18	52610015	Missense_Mutation	SNP	G	TCGA-B0-4837-01A-01D-1373-10	18418068	52610015	25467233	41	7931											
PRX	57716	hgsc.bcm.edu	37	19	40902613	40902613	+	Missense_Mutation	SNP	G	G	A	rs150582069		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	40902613	G	A	40902613	3	1	127	1	0	0	0	0	1	0	0	0	12652	1116	39	1	2743	1	PRX	19	40902613	Missense_Mutation	SNP	G	TCGA-B0-4837-01A-01D-1373-10		40902613	18226370	42	7932											
C20orf26	26074	hgsc.bcm.edu	37	20	20140084	20140084	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	G	20140084	C	G	20140084	3	3	127	1	0	0	0	0	1	0	0	0	2108	652	23	4	1056	4	C20orf26	20	20140084	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10		20140084	42885436	43	7933											
KDM5C	8242	ucsc.edu	37	X	53222653	53222656	+	Frame_Shift_Del	DEL	GGCT	GGCT	-	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	GGCT	GGCT	GGCT	-	GGCT	GGCT	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	-	53222656	GGCT	-	53222653	7	5	127	1	0	1	0	1	0	0	0	0	8142	1232	43	0	505	0	KDM5C	23	53222653	Frame_Shift_Del	DEL	GGCT	TCGA-B0-4837-01A-01D-1373-10		53222653	102047907	44	7934											
HUWE1	10075	hgsc.bcm.edu	37	X	53579772	53579772	+	Silent	SNP	T	T	A	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	53579772	T	A	53579772	2	1	127	1	0	0	0	0	0	0	0	1	7468	1799	63	5		5	HUWE1	23	53579772	Silent	SNP	T	TCGA-B0-4837-01A-01D-1373-10	357119	53579772	101690788	45	7935											
OGT	8473	hgsc.bcm.edu	37	X	70775921	70775921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4837-01A-01D-1373-10	TCGA-B0-4837-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	078b4a67-3a8a-40f4-928c-768fa3c91450	05cbbbd4-67af-4685-b4d8-80ebe715333c	A	70775921	C	A	70775921	3	1	127	1	0	0	0	0	1	0	0	0	10854	884	31	4	1072	4	OGT	23	70775921	Missense_Mutation	SNP	C	TCGA-B0-4837-01A-01D-1373-10	17196149	70775921	84494639	46	7936											
NDUFS2	4720	hgsc.bcm.edu;ucsc.edu	37	1	161183209	161183209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	C	161183209	A	C	161183209	3	2	128	1	0	0	0	0	1	0	0	0	10299	391	14	5	1198	5	NDUFS2	1	161183209	Missense_Mutation	SNP	A	TCGA-B0-4838-01A-01D-1373-10		161183209	88067412	1	7937											
BAT2L2	0	hgsc.bcm.edu;ucsc.edu	37	1	171553099	171553099	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	171553099	C	G	171553099	3	3	128	1	0	0	0	0	1	0	0	0	1321	827	29	4	7518	4	BAT2L2	1	171553099	Missense_Mutation	SNP	C	TCGA-B0-4838-01A-01D-1373-10	10369890	171553099	77697522	2	7938											
LYPLAL1	127018	hgsc.bcm.edu	37	1	219347283	219347283	+	Silent	SNP	A	A	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	219347283	A	G	219347283	2	3	128	1	0	0	0	0	0	0	0	1	9125	175	7	3		3	LYPLAL1	1	219347283	Silent	SNP	A	TCGA-B0-4838-01A-01D-1373-10	47794184	219347283	29903338	3	7939											
EPRS	2058	hgsc.bcm.edu;ucsc.edu	37	1	220153534	220153534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	220153534	C	T	220153534	3	4	128	1	0	0	0	0	1	0	0	0	5193	739	26	2	962	2	EPRS	1	220153534	Missense_Mutation	SNP	C	TCGA-B0-4838-01A-01D-1373-10	806251	220153534	29097087	4	7940											
SIPA1L2	57568	hgsc.bcm.edu;ucsc.edu	37	1	232600814	232600814	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	C	232600814	G	C	232600814	3	2	128	1	0	0	0	0	1	0	0	0	14343	1049	37	4	2636	4	SIPA1L2	1	232600814	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10	12447280	232600814	16649807	5	7941											
TANC1	85461	hgsc.bcm.edu;ucsc.edu	37	2	159992709	159992709	+	Silent	SNP	C	C	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	159992709	C	G	159992709	2	3	128	1	0	0	0	0	0	0	0	1	15556	639	23	4		4	TANC1	2	159992709	Silent	SNP	C	TCGA-B0-4838-01A-01D-1373-10		159992709	83206664	6	7942											
LTF	4057	hgsc.bcm.edu	37	3	46479585	46479585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	46479585	G	T	46479585	3	4	128	1	0	0	0	0	1	0	0	0	9086	1368	48	4	196	4	LTF	3	46479585	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10		46479585	151542845	7	7943											
PPP2R3A	5523	hgsc.bcm.edu;ucsc.edu	37	3	135820908	135820908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	135820908	A	T	135820908	3	4	128	1	0	0	0	0	1	0	0	0	12398	304	11	5	3161	5	PPP2R3A	3	135820908	Missense_Mutation	SNP	A	TCGA-B0-4838-01A-01D-1373-10	89341323	135820908	62201522	8	7944											
SPOCK1	6695	hgsc.bcm.edu	37	5	136403473	136403473	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	A	136403473	T	A	136403473	3	1	128	1	0	0	0	0	1	0	0	0	15091	1696	59	5	823	5	SPOCK1	5	136403473	Missense_Mutation	SNP	T	TCGA-B0-4838-01A-01D-1373-10		136403473	44511787	9	7945											
FAM13B	51306	hgsc.bcm.edu;ucsc.edu	37	5	137347568	137347568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	137347568	T	G	137347568	3	3	128	1	0	0	0	0	1	0	0	0	5457	1493	52	5	2456	5	FAM13B	5	137347568	Missense_Mutation	SNP	T	TCGA-B0-4838-01A-01D-1373-10	944095	137347568	43567692	10	7946											
SLC36A1	206358	hgsc.bcm.edu	37	5	150847285	150847285	+	Missense_Mutation	SNP	T	T	A	rs144783326	alternate_allele	TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	A	150847285	T	A	150847285	3	1	128	1	0	0	0	0	1	0	0	0	14606	1461	51	5	544	5	SLC36A1	5	150847285	Missense_Mutation	SNP	T	TCGA-B0-4838-01A-01D-1373-10	13499717	150847285	30067975	11	7947											
CACNA2D1	781	hgsc.bcm.edu;ucsc.edu	37	7	81594953	81594953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	81594953	C	T	81594953	3	4	128	1	0	0	0	0	1	0	0	0	2550	507	18	2	776	2	CACNA2D1	7	81594953	Missense_Mutation	SNP	C	TCGA-B0-4838-01A-01D-1373-10		81594953	77543710	12	7948											
SYPL1	6856	hgsc.bcm.edu;ucsc.edu	37	7	105739686	105739686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	105739686	C	T	105739686	3	4	128	1	0	0	0	0	1	0	0	0	15474	623	22	2	629	2	SYPL1	7	105739686	Missense_Mutation	SNP	C	TCGA-B0-4838-01A-01D-1373-10	24144733	105739686	53398977	13	7949											
PPP1R3A	5506	hgsc.bcm.edu	37	7	113518387	113518387	+	Silent	SNP	A	A	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	113518387	A	G	113518387	2	3	128	1	0	0	0	0	0	0	0	1	12381	446	16	3		3	PPP1R3A	7	113518387	Silent	SNP	A	TCGA-B0-4838-01A-01D-1373-10	7778701	113518387	45620276	14	7950											
CLEC5A	23601	hgsc.bcm.edu;ucsc.edu	37	7	141635627	141635627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	A	141635627	G	A	141635627	3	1	128	1	0	0	0	0	1	0	0	0	3521	1145	40	1	246	1	CLEC5A	7	141635627	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10	28117240	141635627	17503036	15	7951											
FGF20	26281	hgsc.bcm.edu;ucsc.edu	37	8	16850793	16850793	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	C	16850793	G	C	16850793	3	2	128	1	0	0	0	0	1	0	0	0	5856	1328	46	4	215	4	FGF20	8	16850793	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10		16850793	129513229	16	7952											
CCDC107	203260	hgsc.bcm.edu	37	9	35660625	35660625	+	Silent	SNP	C	C	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	35660625	C	T	35660625	2	4	128	1	0	0	0	0	0	0	0	1	2744	796	28	2		2	CCDC107	9	35660625	Silent	SNP	C	TCGA-B0-4838-01A-01D-1373-10		35660625	105552806	17	7953											
NAA35	60560	hgsc.bcm.edu;ucsc.edu	37	9	88631485	88631485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	88631485	A	G	88631485	3	3	128	1	0	0	0	0	1	0	0	0	10130	333	12	3	1666	3	NAA35	9	88631485	Missense_Mutation	SNP	A	TCGA-B0-4838-01A-01D-1373-10	52970860	88631485	52581946	18	7954											
CDK5RAP2	55755	hgsc.bcm.edu	37	9	123169477	123169477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	C	123169477	G	C	123169477	3	2	128	1	0	0	0	0	1	0	0	0	3148	1368	48	4	933	4	CDK5RAP2	9	123169477	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10	34537992	123169477	18043954	19	7955											
CDH23	64072	hgsc.bcm.edu;ucsc.edu	37	10	73199633	73199633	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	C	73199633	G	C	73199633	3	2	128	1	0	0	0	0	1	0	0	0	3110	1339	47	4	47	4	CDH23	10	73199633	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10		73199633	62335114	20	7956											
SMC3	9126	hgsc.bcm.edu;ucsc.edu	37	10	112328742	112328742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	112328742	A	T	112328742	3	4	128	1	0	0	0	0	1	0	0	0	14797	333	12	5	68	5	SMC3	10	112328742	Missense_Mutation	SNP	A	TCGA-B0-4838-01A-01D-1373-10	39129109	112328742	23206005	21	7957											
DUSP8	1850	hgsc.bcm.edu;ucsc.edu	37	11	1580186	1580186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	1580186	G	T	1580186	3	4	128	1	0	0	0	0	1	0	0	0	4833	1232	43	4	1423	4	DUSP8	11	1580186	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10		1580186	133426330	22	7958											
TMPRSS13	84000	hgsc.bcm.edu	37	11	117772955	117772955	+	Silent	SNP	T	T	C	rs73020481	bycluster;byfrequency;by1000genomes	TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	C	117772955	T	C	117772955	2	2	128	1	0	0	0	0	0	0	0	1	16257	1761	61	3		3	TMPRSS13	11	117772955	Silent	SNP	T	TCGA-B0-4838-01A-01D-1373-10	116192769	117772955	17233561	23	7959											
DNAJC14	85406	hgsc.bcm.edu	37	12	56221611	56221611	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	A	56221611	G	A	56221611	4	1	128	1	0	0	0	0	0	1	0	0	4635	1328	46	2	1300	2	DNAJC14	12	56221611	Nonsense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10		56221611	77630284	24	7960											
C12orf64	0	hgsc.bcm.edu;ucsc.edu	37	12	80750654	80750654	+	Silent	SNP	A	A	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	80750654	A	G	80750654	2	3	128	1	0	0	0	0	0	0	0	1	1709	69	3	3		3	C12orf64	12	80750654	Silent	SNP	A	TCGA-B0-4838-01A-01D-1373-10	24529043	80750654	53101241	25	7961											
DHX37	57647	hgsc.bcm.edu	37	12	125455876	125455876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	125455876	A	G	125455876	3	3	128	1	0	0	0	0	1	0	0	0	4512	188	7	3	2390	3	DHX37	12	125455876	Missense_Mutation	SNP	A	TCGA-B0-4838-01A-01D-1373-10	44705222	125455876	8396019	26	7962											
RIMBP2	23504	hgsc.bcm.edu;ucsc.edu	37	12	130897239	130897239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	130897239	C	T	130897239	3	4	128	1	0	0	0	0	1	0	0	0	13376	797	28	2	432	2	RIMBP2	12	130897239	Missense_Mutation	SNP	C	TCGA-B0-4838-01A-01D-1373-10	5441363	130897239	2954656	27	7963											
NBEA	26960	hgsc.bcm.edu;ucsc.edu	37	13	35758117	35758117	+	Silent	SNP	G	G	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	35758117	G	T	35758117	2	4	128	1	0	0	0	0	0	0	0	1	10194	1335	47	4		4	NBEA	13	35758117	Silent	SNP	G	TCGA-B0-4838-01A-01D-1373-10		35758117	79411761	28	7964											
OR6S1	341799	hgsc.bcm.edu;ucsc.edu	37	14	21109071	21109071	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	21109071	A	T	21109071	3	4	128	1	0	0	0	0	1	0	0	0	11216	243	9	5	219	5	OR6S1	14	21109071	Missense_Mutation	SNP	A	TCGA-B0-4838-01A-01D-1373-10		21109071	86240469	29	7965											
MTHFD1	4522	hgsc.bcm.edu;ucsc.edu	37	14	64882205	64882205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	A	64882205	G	A	64882205	3	1	128	1	0	0	0	0	1	0	0	0	9934	1377	48	2	388	2	MTHFD1	14	64882205	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10	43773134	64882205	42467335	30	7966											
POMT2	29954	hgsc.bcm.edu;ucsc.edu	37	14	77746380	77746380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	77746380	T	G	77746380	3	3	128	1	0	0	0	0	1	0	0	0	12253	1406	49	5	503	5	POMT2	14	77746380	Missense_Mutation	SNP	T	TCGA-B0-4838-01A-01D-1373-10	12864175	77746380	29603160	31	7967											
VWA3A	146177	hgsc.bcm.edu	37	16	22135024	22135024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	C	22135024	A	C	22135024	3	2	128	1	0	0	0	0	1	0	0	0	17252	15	1	5	1590	5	VWA3A	16	22135024	Missense_Mutation	SNP	A	TCGA-B0-4838-01A-01D-1373-10		22135024	68219729	32	7968											
SALL1	6299	hgsc.bcm.edu	37	16	51171109	51171109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	51171109	G	T	51171109	3	4	128	1	0	0	0	0	1	0	0	0	13823	991	35	4	89	4	SALL1	16	51171109	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10	29036085	51171109	39183644	33	7969											
CES1	1066	hgsc.bcm.edu	37	16	55862682	55862682	+	Missense_Mutation	SNP	G	G	A	rs144498758	byfrequency	TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	A	55862682	G	A	55862682	3	1	128	1	0	0	0	0	1	0	0	0	3271	1000	35	2	1501	2	CES1	16	55862682	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10	4691573	55862682	34492071	34	7970											
MYO18A	399687	hgsc.bcm.edu;ucsc.edu	37	17	27417887	27417887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	27417887	C	G	27417887	3	3	128	1	0	0	0	0	1	0	0	0	10072	864	30	4	951	4	MYO18A	17	27417887	Missense_Mutation	SNP	C	TCGA-B0-4838-01A-01D-1373-10		27417887	53777323	35	7971											
PGS1	9489	hgsc.bcm.edu;ucsc.edu	37	17	76396757	76396757	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	A	76396757	G	A	76396757	5	1	128	1	0	0	0	0	0	0	1	0	11815	1043	36	2	723	2	PGS1	17	76396757	Splice_Site	SNP	G	TCGA-B0-4838-01A-01D-1373-10	48978870	76396757	4798453	36	7972											
KIAA0802	0	hgsc.bcm.edu	37	18	8819154	8819154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	8819154	C	T	8819154	3	4	128	1	0	0	0	0	1	0	0	0	8201	893	31	1	3095	1	KIAA0802	18	8819154	Missense_Mutation	SNP	C	TCGA-B0-4838-01A-01D-1373-10		8819154	69258094	37	7973											
SGTA	6449	hgsc.bcm.edu	37	19	2769005	2769005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	G	2769005	T	G	2769005	3	3	128	1	0	0	0	0	1	0	0	0	14238	1696	59	5	919	5	SGTA	19	2769005	Missense_Mutation	SNP	T	TCGA-B0-4838-01A-01D-1373-10		2769005	56359978	38	7974											
COL5A3	50509	hgsc.bcm.edu	37	19	10071434	10071434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	C	10071434	T	C	10071434	3	2	128	1	0	0	0	0	1	0	0	0	3700	1696	59	3	261	3	COL5A3	19	10071434	Missense_Mutation	SNP	T	TCGA-B0-4838-01A-01D-1373-10	7302429	10071434	49057549	39	7975											
CD97	976	hgsc.bcm.edu	37	19	14517988	14517988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	C	14517988	A	C	14517988	3	2	128	1	0	0	0	0	1	0	0	0	3051	130	5	5	2393	5	CD97	19	14517988	Missense_Mutation	SNP	A	TCGA-B0-4838-01A-01D-1373-10	4446554	14517988	44610995	40	7976											
ZNF574	64763	hgsc.bcm.edu	37	19	42584326	42584326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	A	42584326	T	A	42584326	3	1	128	1	0	0	0	0	1	0	0	0	18018	1783	62	5	1570	5	ZNF574	19	42584326	Missense_Mutation	SNP	T	TCGA-B0-4838-01A-01D-1373-10	28066338	42584326	16544657	41	7977											
PCSK2	5126	hgsc.bcm.edu	37	20	17437054	17437054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	A	17437054	C	A	17437054	3	1	128	1	0	0	0	0	1	0	0	0	11608	623	22	4	1201	4	PCSK2	20	17437054	Missense_Mutation	SNP	C	TCGA-B0-4838-01A-01D-1373-10		17437054	45588466	42	7978											
BPI	671	hgsc.bcm.edu;ucsc.edu	37	20	36940337	36940337	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	36940337	C	T	36940337	4	4	128	1	0	0	0	0	0	1	0	0	1492	595	21	2	628	2	BPI	20	36940337	Nonsense_Mutation	SNP	C	TCGA-B0-4838-01A-01D-1373-10	19503283	36940337	26085183	43	7979											
PAGE1	8712	hgsc.bcm.edu	37	X	49454063	49454063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	49454063	A	T	49454063	3	4	128	1	0	0	0	0	1	0	0	0	11396	40	2	5	72	5	PAGE1	23	49454063	Missense_Mutation	SNP	A	TCGA-B0-4838-01A-01D-1373-10		49454063	105816497	44	7980											
F9	2158	hgsc.bcm.edu;ucsc.edu	37	X	138633386	138633386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4838-01A-01D-1373-10	TCGA-B0-4838-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6e9ffa47-f919-459c-bde8-0384d717db08	a4eff4fa-ce80-4e09-84b5-265feec77f84	T	138633386	G	T	138633386	3	4	128	1	0	0	0	0	1	0	0	0	5355	1261	44	4	708	4	F9	23	138633386	Missense_Mutation	SNP	G	TCGA-B0-4838-01A-01D-1373-10	89179323	138633386	16637174	45	7981											
C1orf135	0	hgsc.bcm.edu	37	1	26162205	26162205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	26162205	G	A	26162205	3	1	129	1	0	0	0	0	1	0	0	0	2001	1000	35	2	724	2	C1orf135	1	26162205	Missense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10		26162205	223088416	1	7982											
FRRS1	391059	hgsc.bcm.edu;ucsc.edu	37	1	100206440	100206440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	100206440	A	G	100206440	3	3	129	1	0	0	0	0	1	0	0	0	6067	101	4	3	1443	3	FRRS1	1	100206440	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10	74044235	100206440	149044181	2	7983											
RC3H1	149041	hgsc.bcm.edu;ucsc.edu	37	1	173916561	173916561	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	173916561	G	C	173916561	3	2	129	1	0	0	0	0	1	0	0	0	13179	1174	41	4	742	4	RC3H1	1	173916561	Missense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10	73710121	173916561	75334060	3	7984											
NFASC	23114	hgsc.bcm.edu;ucsc.edu	37	1	204957785	204957785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	204957785	A	T	204957785	3	4	129	1	0	0	0	0	1	0	0	0	10366	188	7	5	3113	5	NFASC	1	204957785	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10	31041224	204957785	44292836	4	7985											
USH2A	7399	hgsc.bcm.edu;ucsc.edu	37	1	216061915	216061915	+	Silent	SNP	T	T	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	216061915	T	C	216061915	2	2	129	1	0	0	0	0	0	0	0	1	17048	1451	51	3		3	USH2A	1	216061915	Silent	SNP	T	TCGA-B0-4839-01A-01D-1373-10	11104130	216061915	33188706	5	7986											
EPT1	85465	hgsc.bcm.edu;ucsc.edu	37	2	26587766	26587766	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	26587766	T	A	26587766	3	1	129	1	0	0	0	0	1	0	0	0	5201	1841	64	5	203	5	EPT1	2	26587766	Missense_Mutation	SNP	T	TCGA-B0-4839-01A-01D-1373-10		26587766	216611607	6	7987											
ARHGAP25	9938	hgsc.bcm.edu;ucsc.edu	37	2	69034512	69034512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	69034512	G	A	69034512	3	1	129	1	0	0	0	0	1	0	0	0	874	1116	39	1	632	1	ARHGAP25	2	69034512	Missense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10	42446746	69034512	174164861	7	7988											
RTKN	6242	hgsc.bcm.edu	37	2	74657145	74657145	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	74657145	A	T	74657145	3	4	129	1	0	0	0	0	1	0	0	0	13735	72	3	5	1154	5	RTKN	2	74657145	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10	5622633	74657145	168542228	8	7989											
ZC3H6	376940	hgsc.bcm.edu;ucsc.edu	37	2	113067654	113067654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	113067654	G	A	113067654	3	1	129	1	0	0	0	0	1	0	0	0	17583	971	34	2	543	2	ZC3H6	2	113067654	Missense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10	38410509	113067654	130131719	9	7990											
C2orf67	0	hgsc.bcm.edu	37	2	210896230	210896230	+	Silent	SNP	A	A	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	210896230	A	T	210896230	2	4	129	1	0	0	0	0	0	0	0	1	2188	407	15	5		5	C2orf67	2	210896230	Silent	SNP	A	TCGA-B0-4839-01A-01D-1373-10	97828576	210896230	32303143	10	7991											
SETD2	29072	hgsc.bcm.edu	37	3	47122556	47122556	+	Intron	SNP	C	C	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	47122556	C	A	47122556	1	1	129	0	1	0	0	0	0	0	0	0	14144	870	30	4		4	SETD2	3	47122556	Intron	SNP	C	TCGA-B0-4839-01A-01D-1373-10		47122556	150899874	11	7992											
NISCH	11188	hgsc.bcm.edu	37	3	52504925	52504925	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	52504925	T	A	52504925	5	1	129	1	0	0	0	0	0	0	1	0	10439	1652	57	5	425	5	NISCH	3	52504925	Splice_Site	SNP	T	TCGA-B0-4839-01A-01D-1373-10	5382369	52504925	145517505	12	7993											
STX19	415117	hgsc.bcm.edu;ucsc.edu	37	3	93733631	93733631	+	Silent	SNP	C	C	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	93733631	C	T	93733631	2	4	129	1	0	0	0	0	0	0	0	1	15354	564	20	2		2	STX19	3	93733631	Silent	SNP	C	TCGA-B0-4839-01A-01D-1373-10	41228706	93733631	104288799	13	7994											
CCDC80	151887	hgsc.bcm.edu;ucsc.edu	37	3	112357865	112357865	+	Silent	SNP	G	G	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	112357865	G	A	112357865	2	1	129	1	0	0	0	0	0	0	0	1	2856	1136	40	1		1	CCDC80	3	112357865	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10	18624234	112357865	85664565	14	7995											
PPP2R2C	5522	hgsc.bcm.edu	37	4	6374376	6374376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	6374376	T	C	6374376	3	2	129	1	0	0	0	0	1	0	0	0	12396	1435	50	3	864	3	PPP2R2C	4	6374376	Missense_Mutation	SNP	T	TCGA-B0-4839-01A-01D-1373-10		6374376	184779900	15	7996											
CWH43	80157	hgsc.bcm.edu;ucsc.edu	37	4	49005767	49005767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	49005767	C	T	49005767	3	4	129	1	0	0	0	0	1	0	0	0	4075	768	27	1	844	1	CWH43	4	49005767	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10	42631391	49005767	142148509	16	7997											
ANKRD17	26057	hgsc.bcm.edu;ucsc.edu	37	4	73986632	73986632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	73986632	A	G	73986632	3	3	129	1	0	0	0	0	1	0	0	0	646	72	3	3	4056	3	ANKRD17	4	73986632	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10	24980865	73986632	117167644	17	7998											
SDAD1	55153	hgsc.bcm.edu;ucsc.edu	37	4	76878693	76878693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	76878693	T	C	76878693	3	2	129	1	0	0	0	0	1	0	0	0	13963	1493	52	3	332	3	SDAD1	4	76878693	Missense_Mutation	SNP	T	TCGA-B0-4839-01A-01D-1373-10	2892061	76878693	114275583	18	7999											
HNRPDL	9987	hgsc.bcm.edu;ucsc.edu	37	4	83347663	83347663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	83347663	T	C	83347663	3	2	129	1	0	0	0	0	1	0	0	0	7283	1406	49	3	125	3	HNRPDL	4	83347663	Missense_Mutation	SNP	T	TCGA-B0-4839-01A-01D-1373-10	6468970	83347663	107806613	19	8000											
RANBP3L	202151	hgsc.bcm.edu;ucsc.edu	37	5	36301485	36301485	+	Silent	SNP	G	G	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	36301485	G	A	36301485	2	1	129	1	0	0	0	0	0	0	0	1	13043	991	35	2		2	RANBP3L	5	36301485	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10		36301485	144613775	20	8001											
FTMT	94033	hgsc.bcm.edu;ucsc.edu	37	5	121188165	121188165	+	Missense_Mutation	SNP	C	C	A	rs180751758	by1000genomes;alternate_allele	TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	121188165	C	A	121188165	3	1	129	1	0	0	0	0	1	0	0	0	6092	535	19	4	509	4	FTMT	5	121188165	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10	84886680	121188165	59727095	21	8002											
PPARGC1B	133522	hgsc.bcm.edu	37	5	149210396	149210396	+	Missense_Mutation	SNP	G	G	C	rs189353551	by1000genomes;alternate_allele	TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	149210396	G	C	149210396	3	2	129	1	0	0	0	0	1	0	0	0	12308	1087	38	4	553	4	PPARGC1B	5	149210396	Missense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10	28022231	149210396	31704864	22	8003											
HAND1	9421	hgsc.bcm.edu	37	5	153857038	153857038	+	Silent	SNP	C	C	G	rs34198899	bycluster;byfrequency;by1000genomes	TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	153857038	C	G	153857038	2	3	129	1	0	0	0	0	0	0	0	1	6956	842	30	4		4	HAND1	5	153857038	Silent	SNP	C	TCGA-B0-4839-01A-01D-1373-10	4646642	153857038	27058222	23	8004											
ODZ2	0	hgsc.bcm.edu	37	5	167689204	167689204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	167689204	A	C	167689204	3	2	129	1	0	0	0	0	1	0	0	0	10842	217	8	5	7801	5	ODZ2	5	167689204	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10	13832166	167689204	13226056	24	8005											
TCP11	6954	hgsc.bcm.edu;ucsc.edu	37	6	35089937	35089937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	35089937	C	G	35089937	3	3	129	1	0	0	0	0	1	0	0	0	15725	565	20	4	1000	4	TCP11	6	35089937	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10		35089937	136025130	25	8006											
FAM83B	222584	hgsc.bcm.edu	37	6	54804856	54804856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	54804856	G	T	54804856	3	4	129	1	0	0	0	0	1	0	0	0	5641	1377	48	4	1101	4	FAM83B	6	54804856	Missense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10	19714919	54804856	116310211	26	8007											
IFNGR1	3459	hgsc.bcm.edu;ucsc.edu	37	6	137519571	137519571	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	137519571	A	C	137519571	3	2	129	1	0	0	0	0	1	0	0	0	7556	159	6	5	406	5	IFNGR1	6	137519571	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10	82714715	137519571	33595496	27	8008											
ABCA13	154664	hgsc.bcm.edu	37	7	48428725	48428725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	48428725	C	A	48428725	3	1	129	1	0	0	0	0	1	0	0	0	31	477	17	4	11537	4	ABCA13	7	48428725	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10		48428725	110709938	28	8009											
STC1	6781	hgsc.bcm.edu	37	8	23702339	23702339	+	Silent	SNP	G	G	T	rs143563807	alternate_allele	TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	23702339	G	T	23702339	2	4	129	1	0	0	0	0	0	0	0	1	15287	1124	39	4		4	STC1	8	23702339	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10		23702339	122661683	29	8010											
WHSC1L1	54904	hgsc.bcm.edu;ucsc.edu	37	8	38205403	38205403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	38205403	G	T	38205403	4	4	129	1	0	0	0	0	0	1	0	0	17375	1294	45	4	4205	4	WHSC1L1	8	38205403	Nonsense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10	14503064	38205403	108158619	30	8011											
KCNK9	51305	hgsc.bcm.edu	37	8	140631095	140631095	+	Silent	SNP	G	G	A	rs192943243	by1000genomes	TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	140631095	G	A	140631095	2	1	129	1	0	0	0	0	0	0	0	1	8079	987	35	2		2	KCNK9	8	140631095	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10	102425692	140631095	5732927	31	8012											
BNC2	54796	hgsc.bcm.edu;ucsc.edu	37	9	16419303	16419303	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	16419303	C	G	16419303	3	3	129	1	0	0	0	0	1	0	0	0	1475	623	22	4	319	4	BNC2	9	16419303	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10		16419303	124794128	32	8013											
AMBP	259	hgsc.bcm.edu	37	9	116839007	116839007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	116839007	C	A	116839007	3	1	129	1	0	0	0	0	1	0	0	0	564	595	21	4	963	4	AMBP	9	116839007	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10	100419704	116839007	24374424	33	8014											
IL15RA	3601	hgsc.bcm.edu	37	10	6001726	6001726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	6001726	C	G	6001726	3	3	129	1	0	0	0	0	1	0	0	0	7639	884	31	4	208	4	IL15RA	10	6001726	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10		6001726	129533021	34	8015											
ZNF438	220929	hgsc.bcm.edu;ucsc.edu	37	10	31137593	31137593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	31137593	C	A	31137593	3	1	129	1	0	0	0	0	1	0	0	0	17922	565	20	4	753	4	ZNF438	10	31137593	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10	25135867	31137593	104397154	35	8016											
DCLRE1A	9937	hgsc.bcm.edu;ucsc.edu	37	10	115609997	115609997	+	Silent	SNP	T	T	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	115609997	T	A	115609997	2	1	129	1	0	0	0	0	0	0	0	1	4296	1567	55	5		5	DCLRE1A	10	115609997	Silent	SNP	T	TCGA-B0-4839-01A-01D-1373-10	84472404	115609997	19924750	36	8017											
NLRP10	338322	hgsc.bcm.edu	37	11	7981300	7981300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	7981300	G	A	7981300	3	1	129	1	0	0	0	0	1	0	0	0	10479	942	33	2	112	2	NLRP10	11	7981300	Missense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10		7981300	127025216	37	8018	82	2									
NLRP10	338322	hgsc.bcm.edu	37	11	7981306	7981306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	7981306	C	A	7981306	3	1	129	1	0	0	0	0	1	0	0	0	10479	478	17	4	118	4	NLRP10	11	7981306	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10	6	7981306	127025210	38	8019	82	2									
LRP4	4038	hgsc.bcm.edu	37	11	46914588	46914588	+	Silent	SNP	G	G	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	46914588	G	T	46914588	2	4	129	1	0	0	0	0	0	0	0	1	8966	1115	39	4		4	LRP4	11	46914588	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10	38933282	46914588	88091928	39	8020											
SSRP1	6749	hgsc.bcm.edu;ucsc.edu	37	11	57100524	57100524	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	57100524	T	G	57100524	3	3	129	1	0	0	0	0	1	0	0	0	15206	1783	62	5	1735	5	SSRP1	11	57100524	Missense_Mutation	SNP	T	TCGA-B0-4839-01A-01D-1373-10	10185936	57100524	77905992	40	8021											
GRIK4	2900	hgsc.bcm.edu;ucsc.edu	37	11	120833224	120833224	+	Silent	SNP	C	C	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	120833224	C	T	120833224	2	4	129	1	0	0	0	0	0	0	0	1	6783	767	27	1		1	GRIK4	11	120833224	Silent	SNP	C	TCGA-B0-4839-01A-01D-1373-10	63732700	120833224	14173292	41	8022											
HYLS1	219844	hgsc.bcm.edu;ucsc.edu	37	11	125769715	125769715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	125769715	C	T	125769715	3	4	129	1	0	0	0	0	1	0	0	0	7476	838	29	2	454	2	HYLS1	11	125769715	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10	4936491	125769715	9236801	42	8023											
KRT2	3849	hgsc.bcm.edu	37	12	53039079	53039079	+	Silent	SNP	G	G	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	53039079	G	T	53039079	2	4	129	1	0	0	0	0	0	0	0	1	8464	1335	47	4		4	KRT2	12	53039079	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10		53039079	80812816	43	8024											
ISCU	23479	hgsc.bcm.edu	37	12	108959179	108959179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	108959179	T	C	108959179	3	2	129	1	0	0	0	0	1	0	0	0	7859	1764	61	3	246	3	ISCU	12	108959179	Missense_Mutation	SNP	T	TCGA-B0-4839-01A-01D-1373-10	55920100	108959179	24892716	44	8025											
PABPC3	5042	hgsc.bcm.edu	37	13	25671755	25671755	+	Silent	SNP	G	G	A	rs116223079	byfrequency	TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	25671755	G	A	25671755	2	1	129	1	0	0	0	0	0	0	0	1	11372	1074	38	1		1	PABPC3	13	25671755	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10		25671755	89498123	45	8026	83	2									
PABPC3	5042	hgsc.bcm.edu	37	13	25671759	25671759	+	Missense_Mutation	SNP	C	C	T	rs115121649	byfrequency	TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	25671759	C	T	25671759	3	4	129	1	0	0	0	0	1	0	0	0	11372	768	27	1	1425	1	PABPC3	13	25671759	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10	4	25671759	89498119	46	8027	83	2									
CDK8	1024	hgsc.bcm.edu;ucsc.edu	37	13	26911753	26911753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	26911753	T	C	26911753	3	2	129	1	0	0	0	0	1	0	0	0	3152	1551	54	3	184	3	CDK8	13	26911753	Missense_Mutation	SNP	T	TCGA-B0-4839-01A-01D-1373-10	1239994	26911753	88258125	47	8028											
COMMD6	170622	hgsc.bcm.edu	37	13	76101979	76101979	+	Silent	SNP	G	G	A	rs77512031	bycluster;byfrequency;by1000genomes	TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	76101979	G	A	76101979	2	1	129	1	0	0	0	0	0	0	0	1	3722	1161	41	2		2	COMMD6	13	76101979	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10	49190226	76101979	39067899	48	8029											
NFATC4	4776	hgsc.bcm.edu	37	14	24842419	24842419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	24842419	A	G	24842419	3	3	129	1	0	0	0	0	1	0	0	0	10372	217	8	3	1609	3	NFATC4	14	24842419	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10		24842419	82507121	49	8030											
SNAP23	8773	hgsc.bcm.edu;ucsc.edu	37	15	42822003	42822003	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	42822003	C	T	42822003	4	4	129	1	0	0	0	0	0	1	0	0	14842	528	19	1	578	1	SNAP23	15	42822003	Nonsense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10		42822003	59709389	50	8031											
BCL2L10	10017	hgsc.bcm.edu;ucsc.edu	37	15	52402092	52402092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	52402092	A	G	52402092	3	3	129	1	0	0	0	0	1	0	0	0	1368	217	8	3	50	3	BCL2L10	15	52402092	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10	9580089	52402092	50129300	51	8032											
VPS13C	54832	hgsc.bcm.edu	37	15	62243164	62243164	+	Silent	SNP	G	G	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	62243164	G	A	62243164	2	1	129	1	0	0	0	0	0	0	0	1	17203	933	33	2		2	VPS13C	15	62243164	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10	9841072	62243164	40288228	52	8033											
BBS2	583	hgsc.bcm.edu;ucsc.edu	37	16	56535332	56535332	+	Silent	SNP	C	C	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	56535332	C	T	56535332	2	4	129	1	0	0	0	0	0	0	0	1	1338	755	27	1		1	BBS2	16	56535332	Silent	SNP	C	TCGA-B0-4839-01A-01D-1373-10		56535332	33819421	53	8034											
TPPP3	51673	hgsc.bcm.edu;ucsc.edu	37	16	67424948	67424948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	67424948	G	A	67424948	3	1	129	1	0	0	0	0	1	0	0	0	16427	1232	43	2	475	2	TPPP3	16	67424948	Missense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10	10889616	67424948	22929805	54	8035											
ZNF778	197320	hgsc.bcm.edu	37	16	89294595	89294595	+	Silent	SNP	C	C	T	rs74466939	bycluster;byfrequency;by1000genomes	TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	89294595	C	T	89294595	2	4	129	1	0	0	0	0	0	0	0	1	18163	874	31	1		1	ZNF778	16	89294595	Silent	SNP	C	TCGA-B0-4839-01A-01D-1373-10	21869647	89294595	1060158	55	8036											
FTSJ3	117246	hgsc.bcm.edu;ucsc.edu	37	17	61903958	61903958	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	61903958	A	C	61903958	3	2	129	1	0	0	0	0	1	0	0	0	6096	69	3	5	2477	5	FTSJ3	17	61903958	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10		61903958	19291252	56	8037											
TXNL1	9352	hgsc.bcm.edu	37	18	54281810	54281810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	54281810	C	A	54281810	3	1	129	1	0	0	0	0	1	0	0	0	16816	478	17	4	301	4	TXNL1	18	54281810	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10		54281810	23795438	57	8038											
ZNF532	55205	hgsc.bcm.edu;ucsc.edu	37	18	56585627	56585627	+	Silent	SNP	C	C	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	56585627	C	T	56585627	2	4	129	1	0	0	0	0	0	0	0	1	17984	506	18	2		2	ZNF532	18	56585627	Silent	SNP	C	TCGA-B0-4839-01A-01D-1373-10	2303817	56585627	21491621	58	8039											
PPAP2C	8612	hgsc.bcm.edu	37	19	287592	287592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	287592	G	A	287592	3	1	129	1	0	0	0	0	1	0	0	0	12299	1087	38	1	518	1	PPAP2C	19	287592	Missense_Mutation	SNP	G	TCGA-B0-4839-01A-01D-1373-10		287592	58841391	59	8040											
MUC16	94025	hgsc.bcm.edu	37	19	8996451	8996451	+	Silent	SNP	G	G	A	rs77062145		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	8996451	G	A	8996451	2	1	129	1	0	0	0	0	0	0	0	1	9980	1311	46	2		2	MUC16	19	8996451	Silent	SNP	G	TCGA-B0-4839-01A-01D-1373-10	8708859	8996451	50132532	60	8041											
BRD4	23476	hgsc.bcm.edu	37	19	15364972	15364972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	15364972	A	G	15364972	3	3	129	1	0	0	0	0	1	0	0	0	1506	304	11	3	1994	3	BRD4	19	15364972	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10	6368521	15364972	43764011	61	8042											
PAF1	54623	hgsc.bcm.edu;ucsc.edu	37	19	39876968	39876968	+	Missense_Mutation	SNP	C	C	T	rs145620122		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	39876968	C	T	39876968	3	4	129	1	0	0	0	0	1	0	0	0	11390	652	23	1	340	1	PAF1	19	39876968	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10	24511996	39876968	19252015	62	8043											
CDH4	1002	hgsc.bcm.edu	37	20	60348075	60348075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	C	60348075	A	C	60348075	3	2	129	1	0	0	0	0	1	0	0	0	3114	72	3	5	427	5	CDH4	20	60348075	Missense_Mutation	SNP	A	TCGA-B0-4839-01A-01D-1373-10		60348075	2677445	63	8044											
DRP2	1821	hgsc.bcm.edu	37	X	100497381	100497381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	A	100497381	T	A	100497381	3	1	129	1	0	0	0	0	1	0	0	0	4766	1609	56	5	918	5	DRP2	23	100497381	Missense_Mutation	SNP	T	TCGA-B0-4839-01A-01D-1373-10		100497381	54773179	64	8045											
GPRASP1	9737	hgsc.bcm.edu	37	X	101911560	101911560	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	G	101911560	T	G	101911560	3	3	129	1	0	0	0	0	1	0	0	0	6729	1841	64	5	2721	5	GPRASP1	23	101911560	Missense_Mutation	SNP	T	TCGA-B0-4839-01A-01D-1373-10	1414179	101911560	53359000	65	8046											
NXF3	56000	hgsc.bcm.edu	37	X	102337711	102337711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4839-01A-01D-1373-10	TCGA-B0-4839-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a957c17e-71ed-451a-aad9-a36e82313b3c	63f7be0e-4e73-4ed9-bdc1-2bacda375a40	T	102337711	C	T	102337711	3	4	129	1	0	0	0	0	1	0	0	0	10792	536	19	1	886	1	NXF3	23	102337711	Missense_Mutation	SNP	C	TCGA-B0-4839-01A-01D-1373-10	426151	102337711	52932849	66	8047											
MASP2	10747	hgsc.bcm.edu;ucsc.edu	37	1	11087333	11087333	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	11087333	T	A	11087333	3	1	130	1	0	0	0	0	1	0	0	0	9330	1783	62	5	394	5	MASP2	1	11087333	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10		11087333	238163288	1	8048											
VPS13D	55187	hgsc.bcm.edu;ucsc.edu	37	1	12401915	12401915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	12401915	T	G	12401915	3	3	130	1	0	0	0	0	1	0	0	0	17204	1841	64	5	8863	5	VPS13D	1	12401915	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	1314582	12401915	236848706	2	8049											
TIE1	7075	hgsc.bcm.edu;ucsc.edu	37	1	43777725	43777725	+	Missense_Mutation	SNP	G	G	A	rs141628049		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	43777725	G	A	43777725	3	1	130	1	0	0	0	0	1	0	0	0	15905	1145	40	1	1595	1	TIE1	1	43777725	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	31375810	43777725	205472896	3	8050											
C1orf52	148423	hgsc.bcm.edu;ucsc.edu	37	1	85718361	85718361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	85718361	G	T	85718361	3	4	130	1	0	0	0	0	1	0	0	0	2046	942	33	4	52	4	C1orf52	1	85718361	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	41940636	85718361	163532260	4	8051											
STXBP3	6814	hgsc.bcm.edu	37	1	109325070	109325070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	109325070	A	G	109325070	3	3	130	1	0	0	0	0	1	0	0	0	15366	304	11	3	874	3	STXBP3	1	109325070	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	23606709	109325070	139925551	5	8052											
KCNA10	3744	hgsc.bcm.edu;ucsc.edu	37	1	111060345	111060345	+	Silent	SNP	C	C	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	111060345	C	T	111060345	2	4	130	1	0	0	0	0	0	0	0	1	8009	755	27	1		1	KCNA10	1	111060345	Silent	SNP	C	TCGA-B0-4841-01A-01D-1361-10	1735275	111060345	138190276	6	8053											
ADAMTSL4	54507	hgsc.bcm.edu;ucsc.edu	37	1	150531786	150531786	+	Silent	SNP	C	C	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	150531786	C	A	150531786	2	1	130	1	0	0	0	0	0	0	0	1	277	697	25	4		4	ADAMTSL4	1	150531786	Silent	SNP	C	TCGA-B0-4841-01A-01D-1361-10	39471441	150531786	98718835	7	8054											
SETDB1	9869	hgsc.bcm.edu	37	1	150923098	150923098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	150923098	G	A	150923098	3	1	130	1	0	0	0	0	1	0	0	0	14151	1377	48	2	1791	2	SETDB1	1	150923098	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	391312	150923098	98327523	8	8055											
POGZ	23126	hgsc.bcm.edu	37	1	151377553	151377553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	151377553	G	T	151377553	3	4	130	1	0	0	0	0	1	0	0	0	12193	1299	45	4	278	4	POGZ	1	151377553	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	454455	151377553	97873068	9	8056											
FLG	2312	hgsc.bcm.edu	37	1	152281097	152281097	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	152281097	A	T	152281097	3	4	130	1	0	0	0	0	1	0	0	0	5929	275	10	5	5924	5	FLG	1	152281097	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	903544	152281097	96969524	10	8057											
INTS3	65123	hgsc.bcm.edu	37	1	153701140	153701140	+	Silent	SNP	A	A	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	153701140	A	C	153701140	2	2	130	1	0	0	0	0	0	0	0	1	7786	175	7	5		5	INTS3	1	153701140	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10	1420043	153701140	95549481	11	8058											
FCRL4	83417	hgsc.bcm.edu;ucsc.edu	37	1	157557715	157557715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	157557715	T	C	157557715	3	2	130	1	0	0	0	0	1	0	0	0	5804	1464	51	3	1081	3	FCRL4	1	157557715	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	3856575	157557715	91692906	12	8059											
TADA1	117143	hgsc.bcm.edu;ucsc.edu	37	1	166839078	166839078	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	166839078	G	C	166839078	3	2	130	1	0	0	0	0	1	0	0	0	15521	991	35	4	947	4	TADA1	1	166839078	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	9281363	166839078	82411543	13	8060											
PROX1	5629	hgsc.bcm.edu	37	1	214170552	214170552	+	Missense_Mutation	SNP	T	T	A	rs146788962	alternate_allele	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	214170552	T	A	214170552	3	1	130	1	0	0	0	0	1	0	0	0	12570	1725	60	5	676	5	PROX1	1	214170552	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	47331474	214170552	35080069	14	8061											
HS1BP3	64342	hgsc.bcm.edu	37	2	20838372	20838372	+	Silent	SNP	A	A	G	rs113332675		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	20838372	A	G	20838372	2	3	130	1	0	0	0	0	0	0	0	1	7368	98	4	3		3	HS1BP3	2	20838372	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10		20838372	222361001	15	8062											
USP34	9736	hgsc.bcm.edu	37	2	61571101	61571101	+	Silent	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	61571101	T	C	61571101	2	2	130	1	0	0	0	0	0	0	0	1	17077	1799	63	3		3	USP34	2	61571101	Silent	SNP	T	TCGA-B0-4841-01A-01D-1361-10	40732729	61571101	181628272	16	8063											
TTN	7273	hgsc.bcm.edu	37	2	179648812	179648812	+	Missense_Mutation	SNP	G	G	T	rs138788406	alternate_allele	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	179648812	G	T	179648812	3	4	130	1	0	0	0	0	1	0	0	0	16747	1136	40	4	108616	4	TTN	2	179648812	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	118077711	179648812	63550561	17	8064											
ADAM23	8745	hgsc.bcm.edu	37	2	207424812	207424812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	207424812	A	T	207424812	3	4	130	1	0	0	0	0	1	0	0	0	245	72	3	5	1181	5	ADAM23	2	207424812	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	27776000	207424812	35774561	18	8065											
C2orf24	0	hgsc.bcm.edu	37	2	220038162	220038162	+	Silent	SNP	T	T	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	220038162	T	A	220038162	2	1	130	1	0	0	0	0	0	0	0	1	2161	1538	54	5		5	C2orf24	2	220038162	Silent	SNP	T	TCGA-B0-4841-01A-01D-1361-10	12613350	220038162	23161211	19	8066											
CIDEC	63924	hgsc.bcm.edu	37	3	9908860	9908860	+	Silent	SNP	C	C	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	9908860	C	T	9908860	2	4	130	1	0	0	0	0	0	0	0	1	3429	680	24	2		2	CIDEC	3	9908860	Silent	SNP	C	TCGA-B0-4841-01A-01D-1361-10		9908860	188113570	20	8067											
XPC	7508	hgsc.bcm.edu	37	3	14193901	14193901	+	Silent	SNP	A	A	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	14193901	A	T	14193901	2	4	130	1	0	0	0	0	0	0	0	1	17453	291	11	5		5	XPC	3	14193901	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10	4285041	14193901	183828529	21	8068											
IL1RAP	3556	hgsc.bcm.edu;ucsc.edu	37	3	190322001	190322001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	190322001	T	G	190322001	3	3	130	1	0	0	0	0	1	0	0	0	7667	1841	64	5	155	5	IL1RAP	3	190322001	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	176128100	190322001	7700429	22	8069											
TMPRSS11F	389208	hgsc.bcm.edu	37	4	68930482	68930482	+	Silent	SNP	A	A	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	68930482	A	G	68930482	2	3	130	1	0	0	0	0	0	0	0	1	16255	1	1	3		3	TMPRSS11F	4	68930482	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10		68930482	122223794	23	8070											
UGT2B28	54490	hgsc.bcm.edu	37	4	70160277	70160277	+	Missense_Mutation	SNP	T	T	G	rs78792884		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	70160277	T	G	70160277	3	3	130	1	0	0	0	0	1	0	0	0	16972	1406	49	5	1362	5	UGT2B28	4	70160277	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	1229795	70160277	120993999	24	8071											
KLHL8	57563	hgsc.bcm.edu;ucsc.edu	37	4	88099693	88099693	+	Silent	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	88099693	G	A	88099693	2	1	130	1	0	0	0	0	0	0	0	1	8402	1368	48	2		2	KLHL8	4	88099693	Silent	SNP	G	TCGA-B0-4841-01A-01D-1361-10	17939416	88099693	103054583	25	8072											
COL25A1	84570	hgsc.bcm.edu;ucsc.edu	37	4	109790280	109790280	+	Silent	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	109790280	T	C	109790280	2	2	130	1	0	0	0	0	0	0	0	1	3686	1606	56	3		3	COL25A1	4	109790280	Silent	SNP	T	TCGA-B0-4841-01A-01D-1361-10	21690587	109790280	81363996	26	8073											
LRIT3	345193	hgsc.bcm.edu	37	4	110791088	110791090	+	In_Frame_Del	DEL	TCT	TCT	-	rs147608421	by1000genomes	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	-	110791090	TCT	-	110791088	7	5	130	1	0	1	0	1	0	0	0	0	8956	1435	50	0	1058	0	LRIT3	4	110791088	In_Frame_Del	DEL	TCT	TCGA-B0-4841-01A-01D-1361-10	1000808	110791088	80363188	27	8074											
USP53	54532	hgsc.bcm.edu;ucsc.edu	37	4	120192821	120192821	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	120192821	A	C	120192821	3	2	130	1	0	0	0	0	1	0	0	0	17096	11	1	5	1852	5	USP53	4	120192821	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	9401733	120192821	70961455	28	8075											
CCRN4L	25819	hgsc.bcm.edu;ucsc.edu	37	4	139965861	139965861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	139965861	T	C	139965861	3	2	130	1	0	0	0	0	1	0	0	0	2953	1464	51	3	539	3	CCRN4L	4	139965861	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	19773040	139965861	51188415	29	8076											
C4orf27	54969	hgsc.bcm.edu;ucsc.edu	37	4	170671701	170671701	+	Silent	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	170671701	G	A	170671701	2	1	130	1	0	0	0	0	0	0	0	1	2260	1368	48	2		2	C4orf27	4	170671701	Silent	SNP	G	TCGA-B0-4841-01A-01D-1361-10	30705840	170671701	20482575	30	8077											
SKIV2L2	23517	hgsc.bcm.edu;ucsc.edu	37	5	54645468	54645468	+	Silent	SNP	A	A	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	54645468	A	G	54645468	2	3	130	1	0	0	0	0	0	0	0	1	14373	11	1	3		3	SKIV2L2	5	54645468	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10		54645468	126269792	31	8078											
BDP1	55814	hgsc.bcm.edu;ucsc.edu	37	5	70855948	70855948	+	Silent	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	70855948	G	A	70855948	2	1	130	1	0	0	0	0	0	0	0	1	1395	1306	46	2		2	BDP1	5	70855948	Silent	SNP	G	TCGA-B0-4841-01A-01D-1361-10	16210480	70855948	110059312	32	8079											
ADAMTS19	171019	hgsc.bcm.edu	37	5	128956323	128956323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	128956323	C	A	128956323	3	1	130	1	0	0	0	0	1	0	0	0	264	506	18	4	1507	4	ADAMTS19	5	128956323	Missense_Mutation	SNP	C	TCGA-B0-4841-01A-01D-1361-10	58100375	128956323	51958937	33	8080											
FAM135A	57579	hgsc.bcm.edu;ucsc.edu	37	6	71235353	71235353	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	71235353	A	T	71235353	4	4	130	1	0	0	0	0	0	1	0	0	5452	363	13	5	2694	5	FAM135A	6	71235353	Nonsense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10		71235353	99879714	34	8081											
SNX3	8724	hgsc.bcm.edu	37	6	108533446	108533446	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	108533446	A	T	108533446	3	4	130	1	0	0	0	0	1	0	0	0	14912	330	12	5	96	5	SNX3	6	108533446	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	37298093	108533446	62581621	35	8082											
TPD52L1	7164	hgsc.bcm.edu;ucsc.edu	37	6	125569531	125569531	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	125569531	T	C	125569531	5	2	130	1	0	0	0	0	0	0	1	0	16410	1652	57	3	402	3	TPD52L1	6	125569531	Splice_Site	SNP	T	TCGA-B0-4841-01A-01D-1361-10	17036085	125569531	45545536	36	8083											
PEX3	8504	hgsc.bcm.edu;ucsc.edu	37	6	143792575	143792575	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	143792575	T	A	143792575	3	1	130	1	0	0	0	0	1	0	0	0	11754	1522	53	5	534	5	PEX3	6	143792575	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	18223044	143792575	27322492	37	8084											
TCP10L2	401285	hgsc.bcm.edu	37	6	167595371	167595371	+	Silent	SNP	T	T	C	rs2989550	bycluster	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	167595371	T	C	167595371	2	2	130	1	0	0	0	0	0	0	0	1	15724	1461	51	3		3	TCP10L2	6	167595371	Silent	SNP	T	TCGA-B0-4841-01A-01D-1361-10	23802796	167595371	3519696	38	8085											
PMS2	5395	hgsc.bcm.edu	37	7	6042131	6042131	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	6042131	A	C	6042131	3	2	130	1	0	0	0	0	1	0	0	0	12150	246	9	5	2142	5	PMS2	7	6042131	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10		6042131	153096532	39	8086											
ELMO1	9844	hgsc.bcm.edu;ucsc.edu	37	7	37311449	37311449	+	Silent	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	37311449	T	C	37311449	2	2	130	1	0	0	0	0	0	0	0	1	5067	1751	61	3		3	ELMO1	7	37311449	Silent	SNP	T	TCGA-B0-4841-01A-01D-1361-10	31269318	37311449	121827214	40	8087											
RAMP3	10268	hgsc.bcm.edu	37	7	45222989	45222989	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	45222989	A	C	45222989	3	2	130	1	0	0	0	0	1	0	0	0	13036	14	1	5	435	5	RAMP3	7	45222989	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	7911540	45222989	113915674	41	8088											
ZCWPW1	55063	hgsc.bcm.edu;ucsc.edu	37	7	100017327	100017327	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	100017327	T	A	100017327	4	1	130	1	0	0	0	0	0	1	0	0	17609	1792	62	5	1798	5	ZCWPW1	7	100017327	Nonsense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	54794338	100017327	59121336	42	8089											
ARHGEF5	7984	hgsc.bcm.edu;ucsc.edu	37	7	144070338	144070338	+	Silent	SNP	A	A	G	rs179371	bysubmitter	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	144070338	A	G	144070338	2	3	130	1	0	0	0	0	0	0	0	1	909	40	2	3		3	ARHGEF5	7	144070338	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10	44053011	144070338	15068325	43	8090											
SSPO	23145	hgsc.bcm.edu	37	7	149480201	149480201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	149480201	G	T	149480201	3	4	130	1	0	0	0	0	1	0	0	0	15201	1232	43	4	2143	4	SSPO	7	149480201	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	5409863	149480201	9658462	44	8091											
REPIN1	29803	hgsc.bcm.edu;ucsc.edu	37	7	150066808	150066808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	150066808	T	C	150066808	3	2	130	1	0	0	0	0	1	0	0	0	13240	1406	49	3	10	3	REPIN1	7	150066808	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	586607	150066808	9071855	45	8092											
HMBOX1	79618	hgsc.bcm.edu;ucsc.edu	37	8	28827803	28827803	+	Silent	SNP	C	C	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	28827803	C	T	28827803	2	4	130	1	0	0	0	0	0	0	0	1	7225	581	21	2		2	HMBOX1	8	28827803	Silent	SNP	C	TCGA-B0-4841-01A-01D-1361-10		28827803	117536219	46	8093											
RNF19A	25897	hgsc.bcm.edu;ucsc.edu	37	8	101271242	101271242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	101271242	T	C	101271242	3	2	130	1	0	0	0	0	1	0	0	0	13483	1841	64	3	461	3	RNF19A	8	101271242	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	72443439	101271242	45092780	47	8094											
GRHL2	79977	hgsc.bcm.edu;ucsc.edu	37	8	102586051	102586051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	102586051	G	C	102586051	3	2	130	1	0	0	0	0	1	0	0	0	6771	1014	35	4	912	4	GRHL2	8	102586051	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	1314809	102586051	43777971	48	8095											
TM7SF4	0	hgsc.bcm.edu	37	8	105360797	105360797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	105360797	C	A	105360797	4	1	130	1	0	0	0	0	0	1	0	0	15988	838	29	4	19	4	TM7SF4	8	105360797	Nonsense_Mutation	SNP	C	TCGA-B0-4841-01A-01D-1361-10	2774746	105360797	41003225	49	8096											
FBP1	2203	hgsc.bcm.edu	37	9	97365720	97365720	+	Silent	SNP	T	T	C	rs1769257	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	97365720	T	C	97365720	2	2	130	1	0	0	0	0	0	0	0	1	5712	1422	50	3		3	FBP1	9	97365720	Silent	SNP	T	TCGA-B0-4841-01A-01D-1361-10		97365720	43847711	50	8097											
ZNF618	114991	hgsc.bcm.edu	37	9	116770786	116770786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	116770786	G	A	116770786	3	1	130	1	0	0	0	0	1	0	0	0	18054	1174	41	2	640	2	ZNF618	9	116770786	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	19405066	116770786	24442645	51	8098											
DFNB31	25861	hgsc.bcm.edu	37	9	117168640	117168640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	117168640	G	A	117168640	3	1	130	1	0	0	0	0	1	0	0	0	4457	1145	40	1	508	1	DFNB31	9	117168640	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	397854	117168640	24044791	52	8099											
GAPVD1	26130	hgsc.bcm.edu	37	9	128086083	128086083	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	128086083	C	A	128086083	4	1	130	1	0	0	0	0	0	1	0	0	6246	838	29	4	1769	4	GAPVD1	9	128086083	Nonsense_Mutation	SNP	C	TCGA-B0-4841-01A-01D-1361-10	10917443	128086083	13127348	53	8100											
MED27	9442	hgsc.bcm.edu	37	9	134889741	134889741	+	Silent	SNP	A	A	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	134889741	A	G	134889741	2	3	130	1	0	0	0	0	0	0	0	1	9452	291	11	3		3	MED27	9	134889741	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10	6803658	134889741	6323690	54	8101											
HPSE2	60495	hgsc.bcm.edu;ucsc.edu	37	10	100503663	100503663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	100503663	T	C	100503663	3	2	130	1	0	0	0	0	1	0	0	0	7352	1725	60	3	1091	3	HPSE2	10	100503663	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10		100503663	35031084	55	8102											
HPSE2	60495	hgsc.bcm.edu	37	10	100992144	100992144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	100992144	C	G	100992144	3	3	130	1	0	0	0	0	1	0	0	0	7352	623	22	4	1451	4	HPSE2	10	100992144	Missense_Mutation	SNP	C	TCGA-B0-4841-01A-01D-1361-10	488481	100992144	34542603	56	8103											
C10orf2	56652	hgsc.bcm.edu	37	10	102748452	102748452	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	102748452	T	G	102748452	3	3	130	1	0	0	0	0	1	0	0	0	1599	1406	49	5	487	5	C10orf2	10	102748452	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	1756308	102748452	32786295	57	8104											
DMBT1	1755	hgsc.bcm.edu	37	10	124340398	124340398	+	Silent	SNP	G	G	T	rs113864071	alternate_allele	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	124340398	G	T	124340398	2	4	130	1	0	0	0	0	0	0	0	1	4579	1045	37	4		4	DMBT1	10	124340398	Silent	SNP	G	TCGA-B0-4841-01A-01D-1361-10	21591946	124340398	11194349	58	8105											
KRTAP5-1	387264	hgsc.bcm.edu	37	11	1606129	1606129	+	Silent	SNP	A	A	C	rs76191756	bycluster;byfrequency;by1000genomes	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	1606129	A	C	1606129	2	2	130	1	0	0	0	0	0	0	0	1	8565	146	6	5		5	KRTAP5-1	11	1606129	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10		1606129	133400387	59	8106											
HBB	3043	hgsc.bcm.edu	37	11	5247865	5247865	+	Missense_Mutation	SNP	A	A	C	rs35693898	bycluster;alternate_allele	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	5247865	A	C	5247865	3	2	130	1	0	0	0	0	1	0	0	0	6985	14	1	5	194	5	HBB	11	5247865	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	3641736	5247865	129758651	60	8107											
IPO7	10527	hgsc.bcm.edu;ucsc.edu	37	11	9424852	9424852	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	9424852	A	C	9424852	3	2	130	1	0	0	0	0	1	0	0	0	7804	246	9	5	106	5	IPO7	11	9424852	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	4176987	9424852	125581664	61	8108											
SAA1	6288	hgsc.bcm.edu;ucsc.edu	37	11	18288477	18288477	+	Missense_Mutation	SNP	G	G	A	rs712021	byfrequency	TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	18288477	G	A	18288477	3	1	130	1	0	0	0	0	1	0	0	0	13811	1232	43	2	45	2	SAA1	11	18288477	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	8863625	18288477	116718039	62	8109											
RTN3	10313	hgsc.bcm.edu;ucsc.edu	37	11	63486909	63486909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	63486909	G	A	63486909	3	1	130	1	0	0	0	0	1	0	0	0	13740	1029	36	2	945	2	RTN3	11	63486909	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	45198432	63486909	71519607	63	8110											
TSGA10IP	254187	hgsc.bcm.edu;ucsc.edu	37	11	65715562	65715562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	65715562	C	G	65715562	3	3	130	1	0	0	0	0	1	0	0	0	16630	565	20	4	1108	4	TSGA10IP	11	65715562	Missense_Mutation	SNP	C	TCGA-B0-4841-01A-01D-1361-10	2228653	65715562	69290954	64	8111											
NOX4	50507	hgsc.bcm.edu	37	11	89059930	89059930	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	89059930	G	C	89059930	3	2	130	1	0	0	0	0	1	0	0	0	10565	1281	45	4	9	4	NOX4	11	89059930	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	23344368	89059930	45946586	65	8112											
MAP3K12	7786	hgsc.bcm.edu	37	12	53878111	53878111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	53878111	A	G	53878111	3	3	130	1	0	0	0	0	1	0	0	0	9253	333	12	3	1532	3	MAP3K12	12	53878111	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10		53878111	79973784	66	8113											
DNAJC14	85406	hgsc.bcm.edu	37	12	56221621	56221621	+	Silent	SNP	A	A	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	56221621	A	G	56221621	2	3	130	1	0	0	0	0	0	0	0	1	4635	224	8	3		3	DNAJC14	12	56221621	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10	2343510	56221621	77630274	67	8114											
ESYT1	23344	hgsc.bcm.edu	37	12	56524688	56524688	+	Silent	SNP	A	A	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	56524688	A	T	56524688	2	4	130	1	0	0	0	0	0	0	0	1	5266	146	6	5		5	ESYT1	12	56524688	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10	303067	56524688	77327207	68	8115											
CHFR	55743	hgsc.bcm.edu	37	12	133454224	133454224	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	133454224	G	C	133454224	3	2	130	1	0	0	0	0	1	0	0	0	3339	1165	41	4	2005	4	CHFR	12	133454224	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	76929536	133454224	397671	69	8116											
PDS5B	23047	hgsc.bcm.edu	37	13	33281137	33281137	+	Silent	SNP	A	A	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	33281137	A	T	33281137	2	4	130	1	0	0	0	0	0	0	0	1	11699	117	5	5		5	PDS5B	13	33281137	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10		33281137	81888741	70	8117											
GMFB	2764	hgsc.bcm.edu;ucsc.edu	37	14	54948885	54948885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	54948885	C	T	54948885	3	4	130	1	0	0	0	0	1	0	0	0	6496	855	30	2	312	2	GMFB	14	54948885	Missense_Mutation	SNP	C	TCGA-B0-4841-01A-01D-1361-10		54948885	52400655	71	8118											
DACT1	51339	hgsc.bcm.edu	37	14	59113726	59113726	+	Silent	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	59113726	G	A	59113726	2	1	130	1	0	0	0	0	0	0	0	1	4224	1103	39	1		1	DACT1	14	59113726	Silent	SNP	G	TCGA-B0-4841-01A-01D-1361-10	4164841	59113726	48235814	72	8119											
ZBTB1	22890	hgsc.bcm.edu;ucsc.edu	37	14	64990159	64990159	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	64990159	A	C	64990159	3	2	130	1	0	0	0	0	1	0	0	0	17534	14	1	5	1939	5	ZBTB1	14	64990159	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	5876433	64990159	42359381	73	8120											
NUMB	8650	hgsc.bcm.edu;ucsc.edu	37	14	73822411	73822411	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	73822411	G	C	73822411	3	2	130	1	0	0	0	0	1	0	0	0	10758	1174	41	4	1946	4	NUMB	14	73822411	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	8832252	73822411	33527129	74	8121											
INO80	54617	hgsc.bcm.edu	37	15	41280146	41280146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	41280146	G	T	41280146	3	4	130	1	0	0	0	0	1	0	0	0	7753	1252	44	4	1101	4	INO80	15	41280146	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10		41280146	61251246	75	8122											
PKM2	0	hgsc.bcm.edu	37	15	72495427	72495427	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	72495427	C	G	72495427	3	3	130	1	0	0	0	0	1	0	0	0	11984	623	22	4	535	4	PKM2	15	72495427	Missense_Mutation	SNP	C	TCGA-B0-4841-01A-01D-1361-10	31215281	72495427	30035965	76	8123											
PRSS22	64063	hgsc.bcm.edu	37	16	2905796	2905796	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	2905796	T	G	2905796	3	3	130	1	0	0	0	0	1	0	0	0	12629	1725	60	5	627	5	PRSS22	16	2905796	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10		2905796	87448957	77	8124											
ATP2A1	487	hgsc.bcm.edu	37	16	28913193	28913193	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	28913193	T	T	28913193	3	4	130	1	0	0	0	0	1	0	0	0	1136	1348	47	4	2172	4	ATP2A1	16	28913193	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	26007397	28913193	61441560	78	8125											
TBX6	6911	hgsc.bcm.edu;ucsc.edu	37	16	30097589	30097589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	30097589	G	T	30097589	3	4	130	1	0	0	0	0	1	0	0	0	15674	1087	38	4	46	4	TBX6	16	30097589	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	1184396	30097589	60257164	79	8126											
ZNF646	9726	hgsc.bcm.edu	37	16	31089315	31089315	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	31089315	A	C	31089315	3	2	130	1	0	0	0	0	1	0	0	0	18074	14	1	5	1672	5	ZNF646	16	31089315	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	991726	31089315	59265438	80	8127											
MYH4	4622	hgsc.bcm.edu;ucsc.edu	37	17	10353952	10353952	+	Silent	SNP	C	C	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	10353952	C	T	10353952	2	4	130	1	0	0	0	0	0	0	0	1	10044	581	21	2		2	MYH4	17	10353952	Silent	SNP	C	TCGA-B0-4841-01A-01D-1361-10		10353952	70841258	81	8128											
TRIM16	10626	hgsc.bcm.edu	37	17	15539426	15539426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	15539426	C	T	15539426	3	4	130	1	0	0	0	0	1	0	0	0	16503	681	24	2	937	2	TRIM16	17	15539426	Missense_Mutation	SNP	C	TCGA-B0-4841-01A-01D-1361-10	5185474	15539426	65655784	82	8129											
KIAA0100	9703	hgsc.bcm.edu;ucsc.edu	37	17	26966630	26966630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	26966630	C	T	26966630	3	4	130	1	0	0	0	0	1	0	0	0	8161	768	27	1	5781	1	KIAA0100	17	26966630	Missense_Mutation	SNP	C	TCGA-B0-4841-01A-01D-1361-10	11427204	26966630	54228580	83	8130											
CCL2	6347	hgsc.bcm.edu	37	17	32583304	32583304	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	32583304	G	C	32583304	3	2	130	1	0	0	0	0	1	0	0	0	2893	1000	35	4	146	4	CCL2	17	32583304	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	5616674	32583304	48611906	84	8131											
AP2B1	163	hgsc.bcm.edu	37	17	33951514	33951514	+	Silent	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	33951514	G	A	33951514	2	1	130	1	0	0	0	0	0	0	0	1	741	1277	45	2		2	AP2B1	17	33951514	Silent	SNP	G	TCGA-B0-4841-01A-01D-1361-10	1368210	33951514	47243696	85	8132											
MPO	4353	hgsc.bcm.edu	37	17	56351014	56351014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	56351014	T	C	56351014	3	2	130	1	0	0	0	0	1	0	0	0	9739	1667	58	3	871	3	MPO	17	56351014	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	22399500	56351014	24844196	86	8133											
METTL2A	339175	hgsc.bcm.edu	37	17	60501288	60501288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	60501288	G	T	60501288	3	4	130	1	0	0	0	0	1	0	0	0	9506	1319	46	4	27	4	METTL2A	17	60501288	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	4150274	60501288	20693922	87	8134											
ASXL3	80816	hgsc.bcm.edu;ucsc.edu	37	18	31319454	31319454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	31319454	T	G	31319454	3	3	130	1	0	0	0	0	1	0	0	0	1068	1667	58	5	2128	5	ASXL3	18	31319454	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10		31319454	46757794	88	8135											
SERPINB7	8710	hgsc.bcm.edu	37	18	61471602	61471602	+	Silent	SNP	A	A	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	61471602	A	G	61471602	2	3	130	1	0	0	0	0	0	0	0	1	14119	301	11	3		3	SERPINB7	18	61471602	Silent	SNP	A	TCGA-B0-4841-01A-01D-1361-10	30152148	61471602	16605646	89	8136											
ZNF823	55552	hgsc.bcm.edu;ucsc.edu	37	19	11833073	11833073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	11833073	T	A	11833073	3	1	130	1	0	0	0	0	1	0	0	0	18191	1580	55	5	560	5	ZNF823	19	11833073	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10		11833073	47295910	90	8137											
RFX1	5989	hgsc.bcm.edu	37	19	14104647	14104647	+	Silent	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	14104647	T	C	14104647	2	2	130	1	0	0	0	0	0	0	0	1	13275	1683	59	3		3	RFX1	19	14104647	Silent	SNP	T	TCGA-B0-4841-01A-01D-1361-10	2271574	14104647	45024336	91	8138											
GATAD2A	54815	hgsc.bcm.edu	37	19	19616156	19616156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	19616156	G	T	19616156	3	4	130	1	0	0	0	0	1	0	0	0	6267	1232	43	4	1817	4	GATAD2A	19	19616156	Missense_Mutation	SNP	G	TCGA-B0-4841-01A-01D-1361-10	5511509	19616156	39512827	92	8139											
TSHZ3	57616	hgsc.bcm.edu	37	19	31770083	31770083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	G	31770083	A	G	31770083	3	3	130	1	0	0	0	0	1	0	0	0	16637	304	11	3	2633	3	TSHZ3	19	31770083	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	12153927	31770083	27358900	93	8140											
C20orf71	0	hgsc.bcm.edu;ucsc.edu	37	20	31815351	31815351	+	Silent	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	31815351	G	A	31815351	2	1	130	1	0	0	0	0	0	0	0	1	2119	991	35	2		2	C20orf71	20	31815351	Silent	SNP	G	TCGA-B0-4841-01A-01D-1361-10		31815351	31210169	94	8141											
RBM39	9584	hgsc.bcm.edu	37	20	34292616	34292616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	34292616	T	C	34292616	3	2	130	1	0	0	0	0	1	0	0	0	13146	1493	52	3	134	3	RBM39	20	34292616	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	2477265	34292616	28732904	95	8142											
ZFP64	55734	hgsc.bcm.edu	37	20	50768804	50768804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	50768804	T	C	50768804	3	2	130	1	0	0	0	0	1	0	0	0	17664	1696	59	3	1313	3	ZFP64	20	50768804	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	16476188	50768804	12256716	96	8143											
MAPK1	5594	hgsc.bcm.edu;ucsc.edu	37	22	22142570	22142570	+	Silent	SNP	G	G	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	22142570	G	A	22142570	2	1	130	1	0	0	0	0	0	0	0	1	9278	962	34	2		2	MAPK1	22	22142570	Silent	SNP	G	TCGA-B0-4841-01A-01D-1361-10		22142570	29161996	97	8144											
SEZ6L	23544	hgsc.bcm.edu	37	22	26688760	26688760	+	Silent	SNP	G	G	T	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	T	26688760	G	T	26688760	2	4	130	1	0	0	0	0	0	0	0	1	14156	1103	39	4		4	SEZ6L	22	26688760	Silent	SNP	G	TCGA-B0-4841-01A-01D-1361-10	4546190	26688760	24615806	98	8145											
PATZ1	23598	hgsc.bcm.edu	37	22	31741483	31741483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	A	31741483	T	A	31741483	3	1	130	1	0	0	0	0	1	0	0	0	11483	1841	64	5	2260	5	PATZ1	22	31741483	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	5052723	31741483	19563083	99	8146											
SFI1	9814	hgsc.bcm.edu	37	22	31998685	31998685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	31998685	A	C	31998685	3	2	130	1	0	0	0	0	1	0	0	0	14169	11	1	5	1781	5	SFI1	22	31998685	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10	257202	31998685	19305881	100	8147											
FBXO7	25793	hgsc.bcm.edu;ucsc.edu	37	22	32894289	32894290	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	-	32894290	AT	-	32894289	7	5	130	1	0	1	0	1	0	0	0	0	5767	98	4	0	1416	0	FBXO7	22	32894289	Frame_Shift_Del	DEL	AT	TCGA-B0-4841-01A-01D-1361-10	895604	32894289	18410277	101	8148											
GPR174	84636	hgsc.bcm.edu;ucsc.edu	37	X	78426650	78426650	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	78426650	A	C	78426650	3	2	130	1	0	0	0	0	1	0	0	0	6679	14	1	5	148	5	GPR174	23	78426650	Missense_Mutation	SNP	A	TCGA-B0-4841-01A-01D-1361-10		78426650	76843910	102	8149											
FAM50A	9130	hgsc.bcm.edu	37	X	153674014	153674014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4841-01A-01D-1361-10	TCGA-B0-4841-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	cd70430c-c9de-4d59-b72c-50e471dbbebb	9542799b-552f-42d3-aa1f-cadfeeffb85d	C	153674014	T	C	153674014	3	2	130	1	0	0	0	0	1	0	0	0	5584	1725	60	3	151	3	FAM50A	23	153674014	Missense_Mutation	SNP	T	TCGA-B0-4841-01A-01D-1361-10	75247364	153674014	1596546	103	8150											
EBNA1BP2	10969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43637236	43637236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	43637236	C	A	43637236	3	1	131	1	0	0	0	0	1	0	0	0	4887	912	32	4	711	4	EBNA1BP2	1	43637236	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08		43637236	205613385	1	8151											
FLG2	388698	broad.mit.edu;ucsc.edu	37	1	152324635	152324635	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	152324635	A	A	152324635	3	1	131	1	0	0	0	0	1	0	0	0	5930	681	24	4	1552	4	FLG2	1	152324635	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	108687399	152324635	96925986	2	8152											
ARHGAP30	257106	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161018362	161018362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	161018362	C	T	161018362	3	4	131	1	0	0	0	0	1	0	0	0	879	594	21	2	860	2	ARHGAP30	1	161018362	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	8693727	161018362	88232259	3	8153											
CNTN2	6900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205041696	205041696	+	Silent	SNP	A	A	C	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	C	205041696	A	C	205041696	2	2	131	1	0	0	0	0	0	0	0	1	3643	233	9	5		5	CNTN2	1	205041696	Silent	SNP	A	TCGA-B0-4842-01A-02D-1421-08	44023334	205041696	44208925	4	8154											
DISP1	84976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223178568	223178568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	C	223178568	T	C	223178568	3	2	131	1	0	0	0	0	1	0	0	0	4541	1522	53	3	3855	3	DISP1	1	223178568	Missense_Mutation	SNP	T	TCGA-B0-4842-01A-02D-1421-08	18136872	223178568	26072053	5	8155											
PYCR2	29920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	226109762	226109762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	226109762	C	A	226109762	3	1	131	1	0	0	0	0	1	0	0	0	12869	796	28	4	642	4	PYCR2	1	226109762	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	2931194	226109762	23140859	6	8156											
PXDN	7837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1664726	1664726	+	Silent	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	1664726	G	A	1664726	2	1	131	1	0	0	0	0	0	0	0	1	12860	1136	40	1		1	PXDN	2	1664726	Silent	SNP	G	TCGA-B0-4842-01A-02D-1421-08		1664726	241534647	7	8157											
NRBP1	29959	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27663740	27663740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	27663740	C	T	27663740	3	4	131	1	0	0	0	0	1	0	0	0	10649	478	17	2	1312	2	NRBP1	2	27663740	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	25999014	27663740	215535633	8	8158											
NRXN1	9378	broad.mit.edu	37	2	50724852	50724852	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	50724852	G	G	50724852	3	3	131	1	0	0	0	0	1	0	0	0	10672	521	18	4	2328	4	NRXN1	2	50724852	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	23061112	50724852	192474521	9	8159											
SPTBN1	6711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	54883108	54883108	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	54883108	G	T	54883108	4	4	131	1	0	0	0	0	0	1	0	0	15131	1175	41	4	6242	4	SPTBN1	2	54883108	Nonsense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	4158256	54883108	188316265	10	8160											
VHL	7428	broad.mit.edu	37	3	10191470	10191470	+	Splice_Site	SNP	G	A	A	rs5030817		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	10191470	A	A	10191470	5	1	131	1	0	0	0	0	0	0	1	0	17174	1043	36	2	473	2	VHL	3	10191470	Splice_Site	SNP	G	TCGA-B0-4842-01A-02D-1421-08		10191470	187830960	11	8161											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52439306	52439306	+	Silent	SNP	A	A	C	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	C	52439306	A	C	52439306	2	2	131	1	0	0	0	0	0	0	0	1	1311	146	6	5		5	BAP1	3	52439306	Silent	SNP	A	TCGA-B0-4842-01A-02D-1421-08	42247836	52439306	145583124	12	8162											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52620674	52620674	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	52620674	G	A	52620674	4	1	131	1	0	0	0	0	0	1	0	0	11498	1124	39	1	1790	1	PBRM1	3	52620674	Nonsense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	181368	52620674	145401756	13	8163											
IGSF10	285313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	151165112	151165112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	151165112	G	A	151165112	3	1	131	1	0	0	0	0	1	0	0	0	7604	1261	44	2	5274	2	IGSF10	3	151165112	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	98544438	151165112	46857318	14	8164											
DHX36	170506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	154018456	154018456	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	154018456	T	A	154018456	3	1	131	1	0	0	0	0	1	0	0	0	4511	1783	62	5	1698	5	DHX36	3	154018456	Missense_Mutation	SNP	T	TCGA-B0-4842-01A-02D-1421-08	2853344	154018456	44003974	15	8165											
MFSD1	64747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	158523240	158523240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	158523240	G	T	158523240	3	4	131	1	0	0	0	0	1	0	0	0	9534	1281	45	4	463	4	MFSD1	3	158523240	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	4504784	158523240	39499190	16	8166											
ATP13A5	344905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	193007828	193007828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	193007828	G	T	193007828	3	4	131	1	0	0	0	0	1	0	0	0	1127	1232	43	4	805	4	ATP13A5	3	193007828	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	34484588	193007828	5014602	17	8167											
NOP14	8602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	2955338	2955338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	C	2955338	T	C	2955338	3	2	131	1	0	0	0	0	1	0	0	0	10543	1551	54	3	1982	3	NOP14	4	2955338	Missense_Mutation	SNP	T	TCGA-B0-4842-01A-02D-1421-08		2955338	188198938	18	8168											
ANKRD50	57182	broad.mit.edu;ucsc.edu	37	4	125590998	125590998	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	125590998	G	G	125590998	3	3	131	1	0	0	0	0	1	0	0	0	677	1435	50	5	859	5	ANKRD50	4	125590998	Missense_Mutation	SNP	T	TCGA-B0-4842-01A-02D-1421-08	122635660	125590998	65563278	19	8169											
TERT	7015	broad.mit.edu	37	5	1255447	1255447	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	1255447	T	T	1255447	3	4	131	1	0	0	0	0	1	0	0	0	15776	826	29	2	298	2	TERT	5	1255447	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08		1255447	179659813	20	8170											
LIFR	3977	hgsc.bcm.edu;ucsc.edu	37	5	38486023	38486023	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	-	38486023	C	-	38486023	7	5	131	1	0	1	0	1	0	0	0	0	8787	710	25	0	914	0	LIFR	5	38486023	Frame_Shift_Del	DEL	C	TCGA-B0-4842-01A-02D-1421-08	37230576	38486023	142429237	21	8171											
HEATR7B2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	41064635	41064635	+	Silent	SNP	G	G	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	41064635	G	T	41064635	2	4	131	1	0	0	0	0	0	0	0	1	7042	1277	45	4		4	HEATR7B2	5	41064635	Silent	SNP	G	TCGA-B0-4842-01A-02D-1421-08	2578612	41064635	139850625	22	8172											
SV2C	22987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	75427933	75427933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	75427933	C	T	75427933	3	4	131	1	0	0	0	0	1	0	0	0	15431	643	23	1	360	1	SV2C	5	75427933	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	34363298	75427933	105487327	23	8173											
ACSL6	23305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131323842	131323842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	131323842	G	T	131323842	3	4	131	1	0	0	0	0	1	0	0	0	181	1174	41	4	1580	4	ACSL6	5	131323842	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	55895909	131323842	49591418	24	8174											
PCDHA13	56136	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140263639	140263639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	140263639	G	A	140263639	3	1	131	1	0	0	0	0	1	0	0	0	11530	1087	38	1	1788	1	PCDHA13	5	140263639	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	8939797	140263639	40651621	25	8175											
RBM27	54439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	145610355	145610355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	C	145610355	T	C	145610355	3	2	131	1	0	0	0	0	1	0	0	0	13140	1696	59	3	747	3	RBM27	5	145610355	Missense_Mutation	SNP	T	TCGA-B0-4842-01A-02D-1421-08	5346716	145610355	35304905	26	8176	84	2									
RBM27	54439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	145610357	145610357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	145610357	A	T	145610357	3	4	131	1	0	0	0	0	1	0	0	0	13140	333	12	5	749	5	RBM27	5	145610357	Missense_Mutation	SNP	A	TCGA-B0-4842-01A-02D-1421-08	2	145610357	35304903	27	8177	84	2									
HLA-E	3133	broad.mit.edu;hgsc.bcm.edu	37	6	30457316	30457316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	30457316	A	G	30457316	3	3	131	1	0	0	0	0	1	0	0	0	7217	333	12	3	10	3	HLA-E	6	30457316	Missense_Mutation	SNP	A	TCGA-B0-4842-01A-02D-1421-08		30457316	140657751	28	8178											
ABRA	137735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	107773573	107773573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	107773573	G	A	107773573	3	1	131	1	0	0	0	0	1	0	0	0	100	1377	48	2	311	2	ABRA	8	107773573	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08		107773573	38590449	29	8179	85	3									
ABRA	137735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	107773580	107773580	+	Silent	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	107773580	G	A	107773580	2	1	131	1	0	0	0	0	0	0	0	1	100	1219	43	2		2	ABRA	8	107773580	Silent	SNP	G	TCGA-B0-4842-01A-02D-1421-08	7	107773580	38590442	30	8180	85	3									
ABRA	137735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	107773583	107773583	+	Silent	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	107773583	G	A	107773583	2	1	131	1	0	0	0	0	0	0	0	1	100	1335	47	2		2	ABRA	8	107773583	Silent	SNP	G	TCGA-B0-4842-01A-02D-1421-08	3	107773583	38590439	31	8181	85	3									
ANKRD20A1	84210	hgsc.bcm.edu	37	9	67938638	67938641	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	TACT	TACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	-	67938641	TACT	-	67938638	7	5	131	1	0	1	0	1	0	0	0	0	648	1406	49	0	795	0	ANKRD20A1	9	67938638	Frame_Shift_Del	DEL	TACT	TCGA-B0-4842-01A-02D-1421-08		67938638	73274793	32	8182											
TSC1	7248	hgsc.bcm.edu;ucsc.edu	37	9	135782693	135782693	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	-	135782693	C	-	135782693	7	5	131	1	0	1	0	1	0	0	0	0	16617	855	30	0	2210	0	TSC1	9	135782693	Frame_Shift_Del	DEL	C	TCGA-B0-4842-01A-02D-1421-08	67844055	135782693	5430738	33	8183											
OR51F1	256892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4790883	4790883	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	4790883	A	T	4790883	3	4	131	1	0	0	0	0	1	0	0	0	11103	43	2	5	676	5	OR51F1	11	4790883	Missense_Mutation	SNP	A	TCGA-B0-4842-01A-02D-1421-08		4790883	130215633	34	8184											
NELL1	4745	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	21250960	21250960	+	Silent	SNP	C	C	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	21250960	C	T	21250960	2	4	131	1	0	0	0	0	0	0	0	1	10340	668	24	2		2	NELL1	11	21250960	Silent	SNP	C	TCGA-B0-4842-01A-02D-1421-08	16460077	21250960	113755556	35	8185											
LARP4	113251	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	50821653	50821653	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	50821653	T	A	50821653	3	1	131	1	0	0	0	0	1	0	0	0	8637	1812	63	5	133	5	LARP4	12	50821653	Missense_Mutation	SNP	T	TCGA-B0-4842-01A-02D-1421-08		50821653	83030242	36	8186											
LETMD1	25875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	51450212	51450212	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	51450212	C	G	51450212	3	3	131	1	0	0	0	0	1	0	0	0	8743	565	20	4	868	4	LETMD1	12	51450212	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	628559	51450212	82401683	37	8187											
DNAH10	196385	broad.mit.edu;hgsc.bcm.edu	37	12	124371778	124371778	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	124371778	C	G	124371778	3	3	131	1	0	0	0	0	1	0	0	0	4600	477	17	4	8761	4	DNAH10	12	124371778	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	72921566	124371778	9480117	38	8188											
KLHL1	57626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	70681442	70681442	+	Silent	SNP	C	C	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	70681442	C	A	70681442	2	1	131	1	0	0	0	0	0	0	0	1	8372	697	25	4		4	KLHL1	13	70681442	Silent	SNP	C	TCGA-B0-4842-01A-02D-1421-08		70681442	44488436	39	8189											
MEFV	4210	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3304667	3304667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	3304667	G	A	3304667	3	1	131	1	0	0	0	0	1	0	0	0	9466	1116	39	1	1980	1	MEFV	16	3304667	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08		3304667	87050086	40	8190											
MVP	9961	broad.mit.edu	37	16	29853112	29853112	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	29853112	A	A	29853112	3	1	131	1	0	0	0	0	1	0	0	0	10003	739	26	4	1417	4	MVP	16	29853112	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	26548445	29853112	60501641	41	8191											
ZNF646	9726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31087733	31087733	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	31087733	C	G	31087733	3	3	131	1	0	0	0	0	1	0	0	0	18074	797	28	4	90	4	ZNF646	16	31087733	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	1234621	31087733	59267020	42	8192											
PDP2	57546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	66919397	66919397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	66919397	G	A	66919397	3	1	131	1	0	0	0	0	1	0	0	0	11693	1174	41	2	1212	2	PDP2	16	66919397	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	35831664	66919397	23435356	43	8193											
INPP5K	51763	hgsc.bcm.edu	37	17	1401343	1401344	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	1401344	-	G	1401343	7	5	131	1	0	1	1	0	0	0	0	0	7767	884	31	0	516	0	INPP5K	17	1401343	Frame_Shift_Ins	INS	-	TCGA-B0-4842-01A-02D-1421-08		1401343	79793867	44	8194											
ASGR2	433	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7010447	7010447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	7010447	C	A	7010447	3	1	131	1	0	0	0	0	1	0	0	0	1040	536	19	4	412	4	ASGR2	17	7010447	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	5609104	7010447	74184763	45	8195											
NCOR1	9611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	15964798	15964798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	15964798	A	G	15964798	3	3	131	1	0	0	0	0	1	0	0	0	10242	449	16	3	1564	3	NCOR1	17	15964798	Missense_Mutation	SNP	A	TCGA-B0-4842-01A-02D-1421-08	8954351	15964798	65230412	46	8196											
HEXDC	284004	broad.mit.edu;ucsc.edu	37	17	80394586	80394586	+	Silent	SNP	C	T	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	80394586	T	T	80394586	2	4	131	1	0	0	0	0	0	0	0	1	7082	489	17	2		2	HEXDC	17	80394586	Silent	SNP	C	TCGA-B0-4842-01A-02D-1421-08	64429788	80394586	800624	47	8197											
RTTN	25914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	67776858	67776858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	67776858	A	G	67776858	3	3	131	1	0	0	0	0	1	0	0	0	13750	188	7	3	2989	3	RTTN	18	67776858	Missense_Mutation	SNP	A	TCGA-B0-4842-01A-02D-1421-08		67776858	10300390	48	8198											
CSNK1G2	1455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1980183	1980183	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	1980183	C	A	1980183	4	1	131	1	0	0	0	0	0	1	0	0	3957	893	31	4	1271	4	CSNK1G2	19	1980183	Nonsense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08		1980183	57148800	49	8199											
ZNF91	7644	broad.mit.edu;hgsc.bcm.edu	37	19	23543382	23543382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	T	23543382	C	T	23543382	3	4	131	1	0	0	0	0	1	0	0	0	18212	478	17	2	1180	2	ZNF91	19	23543382	Missense_Mutation	SNP	C	TCGA-B0-4842-01A-02D-1421-08	21563199	23543382	35585601	50	8200											
DMPK	1760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46281778	46281778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	46281778	G	A	46281778	3	1	131	1	0	0	0	0	1	0	0	0	4586	1059	37	1	1386	1	DMPK	19	46281778	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	22738396	46281778	12847205	51	8201											
CACNA1I	8911	broad.mit.edu;ucsc.edu	37	22	40075845	40075845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	40075845	A	A	40075845	3	1	131	1	0	0	0	0	1	0	0	0	2548	1319	46	2	5643	2	CACNA1I	22	40075845	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08		40075845	11228721	52	8202											
ALG12	79087	hgsc.bcm.edu	37	22	50297496	50297497	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	50297497	-	G	50297496	7	5	131	1	0	1	1	0	0	0	0	0	514	652	23	0	13	0	ALG12	22	50297496	Frame_Shift_Ins	INS	-	TCGA-B0-4842-01A-02D-1421-08	10221651	50297496	1007070	53	8203											
SH3KBP1	30011	hgsc.bcm.edu	37	X	19560246	19560247	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	19560247	-	G	19560246	7	5	131	1	0	1	1	0	0	0	0	0	14268	1567	55	0	320	0	SH3KBP1	23	19560246	Frame_Shift_Ins	INS	-	TCGA-B0-4842-01A-02D-1421-08		19560246	135710314	54	8204											
TAF1	6872	broad.mit.edu;hgsc.bcm.edu	37	X	70613248	70613248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	70613248	G	A	70613248	3	1	131	1	0	0	0	0	1	0	0	0	15525	1145	40	1	3291	1	TAF1	23	70613248	Missense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	51053002	70613248	84657312	55	8205											
ZNF75D	7626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	134427942	134427942	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	G	134427942	T	G	134427942	3	3	131	1	0	0	0	0	1	0	0	0	18146	1493	52	5	1427	5	ZNF75D	23	134427942	Missense_Mutation	SNP	T	TCGA-B0-4842-01A-02D-1421-08	63814694	134427942	20842618	56	8206											
MCF2	4168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	138713618	138713618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	138713618	T	A	138713618	3	1	131	1	0	0	0	0	1	0	0	0	9385	1812	63	5	2725	5	MCF2	23	138713618	Missense_Mutation	SNP	T	TCGA-B0-4842-01A-02D-1421-08	4285676	138713618	16556942	57	8207											
IRAK1	3654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153283528	153283528	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4842-01A-02D-1421-08	TCGA-B0-4842-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ae765ade-6a06-439c-a1cd-67222a70f44e	fc3394f3-58d8-4886-9c72-d6a8f56887df	A	153283528	G	A	153283528	4	1	131	1	0	0	0	0	0	1	0	0	7828	1299	45	2	1332	2	IRAK1	23	153283528	Nonsense_Mutation	SNP	G	TCGA-B0-4842-01A-02D-1421-08	14569910	153283528	1987032	58	8208											
KIF1B	23095	hgsc.bcm.edu	37	1	10318706	10318706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	10318706	A	C	10318706	3	2	132	1	0	0	0	0	1	0	0	0	8291	11	1	5	349	5	KIF1B	1	10318706	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10		10318706	238931915	1	8209											
SSX2IP	117178	hgsc.bcm.edu;ucsc.edu	37	1	85117601	85117601	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	85117601	G	C	85117601	4	2	132	1	0	0	0	0	0	1	0	0	15216	1294	45	4	387	4	SSX2IP	1	85117601	Nonsense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	74798895	85117601	164133020	2	8210											
MCOLN3	55283	hgsc.bcm.edu	37	1	85487844	85487844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	85487844	G	T	85487844	3	4	132	1	0	0	0	0	1	0	0	0	9404	1232	43	4	444	4	MCOLN3	1	85487844	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	370243	85487844	163762777	3	8211											
ARNT	405	hgsc.bcm.edu	37	1	150789853	150789853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	150789853	C	G	150789853	3	3	132	1	0	0	0	0	1	0	0	0	965	797	28	4	835	4	ARNT	1	150789853	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	65302009	150789853	98460768	4	8212											
CGN	57530	hgsc.bcm.edu;ucsc.edu	37	1	151498197	151498197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	151498197	C	T	151498197	3	4	132	1	0	0	0	0	1	0	0	0	3305	838	29	2	1724	2	CGN	1	151498197	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	708344	151498197	97752424	5	8213											
TDRD5	163589	hgsc.bcm.edu;ucsc.edu	37	1	179561765	179561765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	179561765	G	T	179561765	3	4	132	1	0	0	0	0	1	0	0	0	15745	962	34	4	17	4	TDRD5	1	179561765	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	28063568	179561765	69688856	6	8214											
PTGS2	5743	hgsc.bcm.edu;ucsc.edu	37	1	186646028	186646028	+	Silent	SNP	G	G	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	186646028	G	A	186646028	2	1	132	1	0	0	0	0	0	0	0	1	12767	1140	40	1		1	PTGS2	1	186646028	Silent	SNP	G	TCGA-B0-4843-01A-01D-1361-10	7084263	186646028	62604593	7	8215											
PROX1	5629	hgsc.bcm.edu	37	1	214170598	214170598	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	214170598	A	T	214170598	3	4	132	1	0	0	0	0	1	0	0	0	12570	40	2	5	722	5	PROX1	1	214170598	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	27524570	214170598	35080023	8	8216											
OR2T34	127068	hgsc.bcm.edu	37	1	248737664	248737664	+	Missense_Mutation	SNP	C	C	T	rs147489167	byfrequency	TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	248737664	C	T	248737664	3	4	132	1	0	0	0	0	1	0	0	0	11032	710	25	2	565	2	OR2T34	1	248737664	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	34567066	248737664	512957	9	8217											
LRP2	4036	hgsc.bcm.edu;ucsc.edu	37	2	170027076	170027076	+	Missense_Mutation	SNP	C	C	A	rs71430659	alternate_allele	TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	170027076	C	A	170027076	3	1	132	1	0	0	0	0	1	0	0	0	8963	913	32	4	2686	4	LRP2	2	170027076	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10		170027076	73172297	10	8218											
COL4A3	1285	hgsc.bcm.edu	37	2	228131178	228131178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	228131178	C	T	228131178	3	4	132	1	0	0	0	0	1	0	0	0	3693	594	21	2	1447	2	COL4A3	2	228131178	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	58104102	228131178	15068195	11	8219											
C3orf67	200844	hgsc.bcm.edu	37	3	58739534	58739534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	58739534	T	G	58739534	3	3	132	1	0	0	0	0	1	0	0	0	2243	1551	54	5	158	5	C3orf67	3	58739534	Missense_Mutation	SNP	T	TCGA-B0-4843-01A-01D-1361-10		58739534	139282896	12	8220											
KIAA0226	9711	hgsc.bcm.edu;ucsc.edu	37	3	197427934	197427934	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	197427934	G	A	197427934	4	1	132	1	0	0	0	0	0	1	0	0	8169	1299	45	2	2212	2	KIAA0226	3	197427934	Nonsense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	138688400	197427934	594496	13	8221											
UGT3A1	133688	hgsc.bcm.edu;ucsc.edu	37	5	35988576	35988576	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	35988576	G	C	35988576	3	2	132	1	0	0	0	0	1	0	0	0	16975	1299	45	4	1505	4	UGT3A1	5	35988576	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10		35988576	144926684	14	8222											
MRPS36	92259	hgsc.bcm.edu;ucsc.edu	37	5	68522165	68522165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	68522165	G	A	68522165	3	1	132	1	0	0	0	0	1	0	0	0	9852	1275	44	2	49	2	MRPS36	5	68522165	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	32533589	68522165	112393095	15	8223											
GPR98	84059	hgsc.bcm.edu	37	5	89999583	89999583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	89999583	A	T	89999583	3	4	132	1	0	0	0	0	1	0	0	0	6728	362	13	5	8395	5	GPR98	5	89999583	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	21477418	89999583	90915677	16	8224											
ARRDC3	57561	hgsc.bcm.edu;ucsc.edu	37	5	90671371	90671371	+	Silent	SNP	T	T	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	90671371	T	C	90671371	2	2	132	1	0	0	0	0	0	0	0	1	984	1799	63	3		3	ARRDC3	5	90671371	Silent	SNP	T	TCGA-B0-4843-01A-01D-1361-10	671788	90671371	90243889	17	8225											
APC	324	hgsc.bcm.edu	37	5	112177363	112177363	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	112177363	C	G	112177363	3	3	132	1	0	0	0	0	1	0	0	0	763	477	17	4	6130	4	APC	5	112177363	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	21505992	112177363	68737897	18	8226											
SLC4A9	83697	hgsc.bcm.edu	37	5	139747071	139747071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	139747071	G	A	139747071	3	1	132	1	0	0	0	0	1	0	0	0	14673	1203	42	2	2138	2	SLC4A9	5	139747071	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	27569708	139747071	41168189	19	8227											
AFAP1L1	134265	hgsc.bcm.edu	37	5	148685879	148685879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	148685879	C	A	148685879	3	1	132	1	0	0	0	0	1	0	0	0	354	738	26	4	469	4	AFAP1L1	5	148685879	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	8938808	148685879	32229381	20	8228											
ZNF192	0	hgsc.bcm.edu	37	6	28116332	28116332	+	Silent	SNP	G	G	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	28116332	G	A	28116332	2	1	132	1	0	0	0	0	0	0	0	1	17768	1364	48	2		2	ZNF192	6	28116332	Silent	SNP	G	TCGA-B0-4843-01A-01D-1361-10		28116332	142998735	21	8229											
CDC5L	988	hgsc.bcm.edu	37	6	44414438	44414438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	44414438	C	A	44414438	4	1	132	1	0	0	0	0	0	1	0	0	3084	838	29	4	2461	4	CDC5L	6	44414438	Nonsense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	16298106	44414438	126700629	22	8230											
GPR115	221393	hgsc.bcm.edu;ucsc.edu	37	6	47681783	47681783	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	47681783	G	C	47681783	3	2	132	1	0	0	0	0	1	0	0	0	6639	942	33	4	820	4	GPR115	6	47681783	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	3267345	47681783	123433284	23	8231											
CD109	135228	hgsc.bcm.edu;ucsc.edu	37	6	74407205	74407205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	74407205	C	A	74407205	3	1	132	1	0	0	0	0	1	0	0	0	2965	623	22	4	163	4	CD109	6	74407205	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	26725422	74407205	96707862	24	8232											
CD109	135228	hgsc.bcm.edu	37	6	74517871	74517871	+	Silent	SNP	C	C	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	74517871	C	T	74517871	2	4	132	1	0	0	0	0	0	0	0	1	2965	477	17	2		2	CD109	6	74517871	Silent	SNP	C	TCGA-B0-4843-01A-01D-1361-10	110666	74517871	96597196	25	8233											
BVES	11149	hgsc.bcm.edu;ucsc.edu	37	6	105549032	105549032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	105549032	C	A	105549032	3	1	132	1	0	0	0	0	1	0	0	0	1577	797	28	4	71	4	BVES	6	105549032	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	31031161	105549032	65566035	26	8234											
SERAC1	84947	hgsc.bcm.edu	37	6	158565367	158565367	+	Silent	SNP	A	A	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	158565367	A	G	158565367	2	3	132	1	0	0	0	0	0	0	0	1	14087	11	1	3		3	SERAC1	6	158565367	Silent	SNP	A	TCGA-B0-4843-01A-01D-1361-10	53016335	158565367	12549700	27	8235											
STARD3NL	83930	hgsc.bcm.edu;ucsc.edu	37	7	38256830	38256830	+	Silent	SNP	T	T	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	38256830	T	A	38256830	2	1	132	1	0	0	0	0	0	0	0	1	15270	1829	64	5		5	STARD3NL	7	38256830	Silent	SNP	T	TCGA-B0-4843-01A-01D-1361-10		38256830	120881833	28	8236											
PION	54103	hgsc.bcm.edu	37	7	76955572	76955572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	76955572	A	T	76955572	3	4	132	1	0	0	0	0	1	0	0	0	11941	304	11	5	816	5	PION	7	76955572	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	38698742	76955572	82183091	29	8237											
MAGI2	9863	hgsc.bcm.edu;ucsc.edu	37	7	78119122	78119122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	78119122	C	T	78119122	3	4	132	1	0	0	0	0	1	0	0	0	9198	884	31	1	3434	1	MAGI2	7	78119122	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	1163550	78119122	81019541	30	8238											
CSGALNACT1	55790	hgsc.bcm.edu	37	8	19263574	19263574	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	19263574	A	C	19263574	3	2	132	1	0	0	0	0	1	0	0	0	3940	14	1	5	286	5	CSGALNACT1	8	19263574	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10		19263574	127100448	31	8239											
STAU2	27067	hgsc.bcm.edu	37	8	74515976	74515976	+	Silent	SNP	T	T	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	74515976	T	C	74515976	2	2	132	1	0	0	0	0	0	0	0	1	15285	1538	54	3		3	STAU2	8	74515976	Silent	SNP	T	TCGA-B0-4843-01A-01D-1361-10	55252402	74515976	71848046	32	8240											
LINGO2	158038	hgsc.bcm.edu;ucsc.edu	37	9	27948987	27948987	+	Silent	SNP	A	A	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	27948987	A	C	27948987	2	2	132	1	0	0	0	0	0	0	0	1	8822	233	9	5		5	LINGO2	9	27948987	Silent	SNP	A	TCGA-B0-4843-01A-01D-1361-10		27948987	113264444	33	8241											
KIF27	55582	hgsc.bcm.edu;ucsc.edu	37	9	86502010	86502010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	86502010	G	A	86502010	3	1	132	1	0	0	0	0	1	0	0	0	8303	1029	36	2	2060	2	KIF27	9	86502010	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	58553023	86502010	54711421	34	8242											
C9orf79	0	hgsc.bcm.edu	37	9	90498959	90498959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	90498959	A	G	90498959	3	3	132	1	0	0	0	0	1	0	0	0	2499	14	1	3	368	3	C9orf79	9	90498959	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	3996949	90498959	50714472	35	8243											
CDK5RAP2	55755	hgsc.bcm.edu	37	9	123307998	123307998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	123307998	T	C	123307998	3	2	132	1	0	0	0	0	1	0	0	0	3148	1841	64	3	5440	3	CDK5RAP2	9	123307998	Missense_Mutation	SNP	T	TCGA-B0-4843-01A-01D-1361-10	32809039	123307998	17905433	36	8244											
PTEN	5728	ucsc.edu	37	10	89685305	89685306	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	-	-	-	A	-	-	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	89685306	-	A	89685305	7	5	132	1	0	1	1	0	0	0	0	0	12748	1406	49	0	210	0	PTEN	10	89685305	Frame_Shift_Ins	INS	-	TCGA-B0-4843-01A-01D-1361-10		89685305	45849442	37	8245											
CYB5R2	51700	hgsc.bcm.edu;ucsc.edu	37	11	7686754	7686754	+	Missense_Mutation	SNP	C	C	T	rs112522871	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	7686754	C	T	7686754	3	4	132	1	0	0	0	0	1	0	0	0	4129	536	19	1	152	1	CYB5R2	11	7686754	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10		7686754	127319762	38	8246											
PDHX	8050	hgsc.bcm.edu;ucsc.edu	37	11	35016578	35016578	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	35016578	A	C	35016578	3	2	132	1	0	0	0	0	1	0	0	0	11674	69	3	5	1526	5	PDHX	11	35016578	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	27329824	35016578	99989938	39	8247											
CD82	3732	hgsc.bcm.edu	37	11	44640632	44640632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	44640632	C	T	44640632	3	4	132	1	0	0	0	0	1	0	0	0	3042	643	23	1	790	1	CD82	11	44640632	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	9624054	44640632	90365884	40	8248											
GPR152	390212	hgsc.bcm.edu;ucsc.edu	37	11	67218864	67218864	+	Silent	SNP	G	G	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	67218864	G	A	67218864	2	1	132	1	0	0	0	0	0	0	0	1	6665	1252	44	2		2	GPR152	11	67218864	Silent	SNP	G	TCGA-B0-4843-01A-01D-1361-10	22578232	67218864	67787652	41	8249											
MPZL3	196264	hgsc.bcm.edu	37	11	118106270	118106270	+	Silent	SNP	A	A	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	118106270	A	G	118106270	2	3	132	1	0	0	0	0	0	0	0	1	9758	1	1	3		3	MPZL3	11	118106270	Silent	SNP	A	TCGA-B0-4843-01A-01D-1361-10	50887406	118106270	16900246	42	8250											
LRRK2	120892	hgsc.bcm.edu;ucsc.edu	37	12	40758835	40758835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	40758835	T	G	40758835	3	3	132	1	0	0	0	0	1	0	0	0	9040	1464	51	5	7567	5	LRRK2	12	40758835	Missense_Mutation	SNP	T	TCGA-B0-4843-01A-01D-1361-10		40758835	93093060	43	8251											
MLL2	8085	hgsc.bcm.edu	37	12	49442448	49442448	+	Silent	SNP	T	T	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	49442448	T	C	49442448	2	2	132	1	0	0	0	0	0	0	0	1	9628	1741	61	3		3	MLL2	12	49442448	Silent	SNP	T	TCGA-B0-4843-01A-01D-1361-10	8683613	49442448	84409447	44	8252											
DNAJC14	85406	hgsc.bcm.edu	37	12	56221611	56221611	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	56221611	G	A	56221611	4	1	132	1	0	0	0	0	0	1	0	0	4635	1328	46	2	1300	2	DNAJC14	12	56221611	Nonsense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	6779163	56221611	77630284	45	8253											
PLEKHG7	440107	hgsc.bcm.edu	37	12	93147906	93147906	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	93147906	C	G	93147906	3	3	132	1	0	0	0	0	1	0	0	0	12082	594	21	4	374	4	PLEKHG7	12	93147906	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	36926295	93147906	40703989	46	8254											
C12orf51	0	hgsc.bcm.edu	37	12	112616787	112616787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	112616787	G	A	112616787	3	1	132	1	0	0	0	0	1	0	0	0	1698	1086	38	1	1997	1	C12orf51	12	112616787	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	19468881	112616787	21235108	47	8255											
MSI1	4440	hgsc.bcm.edu;ucsc.edu	37	12	120805824	120805824	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	120805824	A	C	120805824	3	2	132	1	0	0	0	0	1	0	0	0	9882	304	11	5	878	5	MSI1	12	120805824	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	8189037	120805824	13046071	48	8256											
TGM1	7051	hgsc.bcm.edu	37	14	24724346	24724346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	24724346	C	G	24724346	3	3	132	1	0	0	0	0	1	0	0	0	15841	855	30	4	710	4	TGM1	14	24724346	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10		24724346	82625194	49	8257											
YLPM1	56252	hgsc.bcm.edu	37	14	75266224	75266224	+	Silent	SNP	T	T	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	75266224	T	A	75266224	2	1	132	1	0	0	0	0	0	0	0	1	17498	1567	55	5		5	YLPM1	14	75266224	Silent	SNP	T	TCGA-B0-4843-01A-01D-1361-10	50541878	75266224	32083316	50	8258											
RIN3	79890	hgsc.bcm.edu	37	14	93118739	93118739	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	93118739	C	G	93118739	3	3	132	1	0	0	0	0	1	0	0	0	13386	796	28	4	1367	4	RIN3	14	93118739	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	17852515	93118739	14230801	51	8259											
SERPINA12	145264	hgsc.bcm.edu;ucsc.edu	37	14	94964183	94964183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	94964183	T	G	94964183	3	3	132	1	0	0	0	0	1	0	0	0	14102	1838	64	5	708	5	SERPINA12	14	94964183	Missense_Mutation	SNP	T	TCGA-B0-4843-01A-01D-1361-10	1845444	94964183	12385357	52	8260											
DYNC1H1	1778	hgsc.bcm.edu;ucsc.edu	37	14	102505179	102505179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	102505179	C	T	102505179	3	4	132	1	0	0	0	0	1	0	0	0	4843	565	20	2	11434	2	DYNC1H1	14	102505179	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	7540996	102505179	4844361	53	8261											
DISP2	85455	hgsc.bcm.edu;ucsc.edu	37	15	40661375	40661375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	40661375	T	C	40661375	3	2	132	1	0	0	0	0	1	0	0	0	4542	1841	64	3	3092	3	DISP2	15	40661375	Missense_Mutation	SNP	T	TCGA-B0-4843-01A-01D-1361-10		40661375	61870017	54	8262											
LEO1	123169	hgsc.bcm.edu;ucsc.edu	37	15	52242167	52242167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	52242167	A	G	52242167	3	3	132	1	0	0	0	0	1	0	0	0	8733	246	9	3	376	3	LEO1	15	52242167	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	11580792	52242167	50289225	55	8263											
ZNF598	90850	hgsc.bcm.edu	37	16	2050421	2050421	+	Silent	SNP	T	T	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	2050421	T	C	2050421	2	2	132	1	0	0	0	0	0	0	0	1	18040	1567	55	3		3	ZNF598	16	2050421	Silent	SNP	T	TCGA-B0-4843-01A-01D-1361-10		2050421	88304332	56	8264											
UQCRC2	7385	hgsc.bcm.edu	37	16	21982911	21982911	+	Silent	SNP	T	T	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	21982911	T	C	21982911	2	2	132	1	0	0	0	0	0	0	0	1	17032	1838	64	3		3	UQCRC2	16	21982911	Silent	SNP	T	TCGA-B0-4843-01A-01D-1361-10	19932490	21982911	68371842	57	8265											
NEURL4	84461	hgsc.bcm.edu	37	17	7224230	7224230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	7224230	C	T	7224230	3	4	132	1	0	0	0	0	1	0	0	0	10354	565	20	2	1351	2	NEURL4	17	7224230	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10		7224230	73970980	58	8266											
LGALS9C	654346	hgsc.bcm.edu;ucsc.edu	37	17	18387268	18387268	+	Missense_Mutation	SNP	G	G	C	rs1682207	bycluster	TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	18387268	G	C	18387268	3	2	132	1	0	0	0	0	1	0	0	0	8757	1319	46	4	125	4	LGALS9C	17	18387268	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10	11163038	18387268	62807942	59	8267											
PCGF2	7703	hgsc.bcm.edu	37	17	36895856	36895856	+	Silent	SNP	C	C	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	36895856	C	T	36895856	2	4	132	1	0	0	0	0	0	0	0	1	11582	726	26	2		2	PCGF2	17	36895856	Silent	SNP	C	TCGA-B0-4843-01A-01D-1361-10	18508588	36895856	44299354	60	8268											
HELZ	9931	hgsc.bcm.edu	37	17	65119196	65119196	+	Silent	SNP	A	A	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	65119196	A	G	65119196	2	3	132	1	0	0	0	0	0	0	0	1	7056	11	1	3		3	HELZ	17	65119196	Silent	SNP	A	TCGA-B0-4843-01A-01D-1361-10	28223340	65119196	16076014	61	8269											
CD300LB	124599	hgsc.bcm.edu	37	17	72527588	72527588	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	72527588	A	T	72527588	3	4	132	1	0	0	0	0	1	0	0	0	3001	159	6	5	719	5	CD300LB	17	72527588	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	7408392	72527588	8667622	62	8270											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9074004	9074004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	9074004	G	T	9074004	3	4	132	1	0	0	0	0	1	0	0	0	9980	942	33	4	30409	4	MUC16	19	9074004	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10		9074004	50054979	63	8271											
SMARCA4	6597	hgsc.bcm.edu	37	19	11145750	11145750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	11145750	C	A	11145750	3	1	132	1	0	0	0	0	1	0	0	0	14783	855	30	4	4222	4	SMARCA4	19	11145750	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	2071746	11145750	47983233	64	8272											
ZNF43	7594	hgsc.bcm.edu;ucsc.edu	37	19	21992281	21992281	+	Silent	SNP	A	A	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	21992281	A	C	21992281	2	2	132	1	0	0	0	0	0	0	0	1	17915	233	9	5		5	ZNF43	19	21992281	Silent	SNP	A	TCGA-B0-4843-01A-01D-1361-10	10846531	21992281	37136702	65	8273											
CEACAM5	1048	hgsc.bcm.edu	37	19	42213868	42213868	+	Missense_Mutation	SNP	A	A	G	rs34155934	bycluster;byfrequency;by1000genomes	TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	42213868	A	G	42213868	3	3	132	1	0	0	0	0	1	0	0	0	3197	217	8	3	340	3	CEACAM5	19	42213868	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	20221587	42213868	16915115	66	8274											
EXOC3L2	90332	hgsc.bcm.edu;ucsc.edu	37	19	45731306	45731306	+	Silent	SNP	T	T	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	45731306	T	C	45731306	2	2	132	1	0	0	0	0	0	0	0	1	5307	1683	59	3		3	EXOC3L2	19	45731306	Silent	SNP	T	TCGA-B0-4843-01A-01D-1361-10	3517438	45731306	13397677	67	8275											
RALGAPB	57148	hgsc.bcm.edu;ucsc.edu	37	20	37146211	37146211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	37146211	C	G	37146211	3	3	132	1	0	0	0	0	1	0	0	0	13028	827	29	4	1140	4	RALGAPB	20	37146211	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10		37146211	25879309	68	8276											
DPM1	8813	hgsc.bcm.edu	37	20	49574946	49574946	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	49574946	T	A	49574946	3	1	132	1	0	0	0	0	1	0	0	0	4726	1783	62	5	703	5	DPM1	20	49574946	Missense_Mutation	SNP	T	TCGA-B0-4843-01A-01D-1361-10	12428735	49574946	13450574	69	8277											
BACH1	571	hgsc.bcm.edu	37	21	30714963	30714963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	30714963	G	T	30714963	3	4	132	1	0	0	0	0	1	0	0	0	1283	1290	45	4	2034	4	BACH1	21	30714963	Missense_Mutation	SNP	G	TCGA-B0-4843-01A-01D-1361-10		30714963	17414932	70	8278											
KRTAP12-3	386683	hgsc.bcm.edu	37	21	46078132	46078132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	46078132	C	A	46078132	3	1	132	1	0	0	0	0	1	0	0	0	8527	623	22	4	238	4	KRTAP12-3	21	46078132	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	15363169	46078132	2051763	71	8279											
GSTT2B	653689	hgsc.bcm.edu	37	22	24300634	24300634	+	Silent	SNP	G	G	T	rs56104230	bycluster;byfrequency;by1000genomes	TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	T	24300634	G	T	24300634	2	4	132	1	0	0	0	0	0	0	0	1	6854	1219	43	4		4	GSTT2B	22	24300634	Silent	SNP	G	TCGA-B0-4843-01A-01D-1361-10		24300634	27003932	72	8280											
PIWIL3	440822	hgsc.bcm.edu	37	22	25145728	25145728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	A	25145728	C	A	25145728	3	1	132	1	0	0	0	0	1	0	0	0	11966	595	21	4	1548	4	PIWIL3	22	25145728	Missense_Mutation	SNP	C	TCGA-B0-4843-01A-01D-1361-10	845094	25145728	26158838	73	8281											
ASB12	142689	hgsc.bcm.edu	37	X	63445177	63445177	+	Silent	SNP	A	A	G	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	G	63445177	A	G	63445177	2	3	132	1	0	0	0	0	0	0	0	1	1016	330	12	3		3	ASB12	23	63445177	Silent	SNP	A	TCGA-B0-4843-01A-01D-1361-10		63445177	91825383	74	8282											
LRCH2	57631	hgsc.bcm.edu	37	X	114357118	114357118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	114357118	T	C	114357118	3	2	132	1	0	0	0	0	1	0	0	0	8940	1435	50	3	155	3	LRCH2	23	114357118	Missense_Mutation	SNP	T	TCGA-B0-4843-01A-01D-1361-10	50911941	114357118	40913442	75	8283											
MAGEC1	9947	hgsc.bcm.edu	37	X	140994462	140994462	+	Missense_Mutation	SNP	A	C	C	rs56675069	bycluster;byfrequency	TCGA-B0-4843-01A-01D-1361-10	TCGA-B0-4843-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dab75789-3305-4d47-b00e-b3d101f5614e	4a57ef39-f6e4-46d0-8f85-610742d1c89e	C	140994462	C	C	140994462	3	2	132	1	0	0	0	0	1	0	0	0	9187	388	14	5	1278	5	MAGEC1	23	140994462	Missense_Mutation	SNP	A	TCGA-B0-4843-01A-01D-1361-10	26637344	140994462	14276098	76	8284											
ENO1	2023	hgsc.bcm.edu	37	1	8925490	8925490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	8925490	A	G	8925490	3	3	133	1	0	0	0	0	1	0	0	0	5123	159	6	3	605	3	ENO1	1	8925490	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10		8925490	240325131	1	8285											
ALDH4A1	8659	hgsc.bcm.edu	37	1	19212058	19212058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	19212058	A	G	19212058	3	3	133	1	0	0	0	0	1	0	0	0	501	101	4	3	1373	3	ALDH4A1	1	19212058	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10	10286568	19212058	230038563	2	8286											
ZMPSTE24	10269	hgsc.bcm.edu;ucsc.edu	37	1	40735725	40735725	+	Silent	SNP	C	C	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	40735725	C	T	40735725	2	4	133	1	0	0	0	0	0	0	0	1	17710	912	32	2		2	ZMPSTE24	1	40735725	Silent	SNP	C	TCGA-B0-4844-01A-01D-1361-10	21523667	40735725	208514896	3	8287											
DOCK7	85440	hgsc.bcm.edu;ucsc.edu	37	1	62954615	62954615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	62954615	A	G	62954615	3	3	133	1	0	0	0	0	1	0	0	0	4694	101	4	3	975	3	DOCK7	1	62954615	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10	22218890	62954615	186296006	4	8288											
MOV10	4343	hgsc.bcm.edu	37	1	113234325	113234325	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	C	113234325	G	C	113234325	3	2	133	1	0	0	0	0	1	0	0	0	9725	1232	43	4	893	4	MOV10	1	113234325	Missense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10	50279710	113234325	136016296	5	8289											
IQGAP3	128239	hgsc.bcm.edu;ucsc.edu	37	1	156501004	156501009	+	In_Frame_Del	DEL	TGGAAC	TGGAAC	-	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	TGGAAC	TGGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	-	156501009	TGGAAC	-	156501004	7	5	133	1	0	1	0	1	0	0	0	0	7823	1464	51	0	780	0	IQGAP3	1	156501004	In_Frame_Del	DEL	TGGAAC	TCGA-B0-4844-01A-01D-1361-10	43266679	156501004	92749617	6	8290											
ATF6	22926	hgsc.bcm.edu;ucsc.edu	37	1	161762092	161762092	+	Silent	SNP	C	C	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	161762092	C	T	161762092	2	4	133	1	0	0	0	0	0	0	0	1	1084	816	29	2		2	ATF6	1	161762092	Silent	SNP	C	TCGA-B0-4844-01A-01D-1361-10	5261088	161762092	87488529	7	8291											
OLFML2B	25903	hgsc.bcm.edu	37	1	161993198	161993198	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	161993198	A	T	161993198	3	4	133	1	0	0	0	0	1	0	0	0	10865	43	2	5	2261	5	OLFML2B	1	161993198	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10	231106	161993198	87257423	8	8292											
RPS27A	6233	hgsc.bcm.edu;ucsc.edu	37	2	55462091	55462091	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	55462091	A	T	55462091	3	4	133	1	0	0	0	0	1	0	0	0	13652	449	16	5	328	5	RPS27A	2	55462091	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10		55462091	187737282	9	8293											
ZC3H6	376940	hgsc.bcm.edu;ucsc.edu	37	2	113060908	113060908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	113060908	T	A	113060908	3	1	133	1	0	0	0	0	1	0	0	0	17583	1754	61	5	326	5	ZC3H6	2	113060908	Missense_Mutation	SNP	T	TCGA-B0-4844-01A-01D-1361-10	57598817	113060908	130138465	10	8294											
TTN	7273	hgsc.bcm.edu	37	2	179614187	179614187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	C	179614187	T	C	179614187	3	2	133	1	0	0	0	0	1	0	0	0	16747	1667	58	3	97357	3	TTN	2	179614187	Missense_Mutation	SNP	T	TCGA-B0-4844-01A-01D-1361-10	66553279	179614187	63585186	11	8295											
FRZB	2487	hgsc.bcm.edu;ucsc.edu	37	2	183730988	183730988	+	Missense_Mutation	SNP	A	A	T	rs139461108	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	183730988	A	T	183730988	3	4	133	1	0	0	0	0	1	0	0	0	6072	101	4	5	708	5	FRZB	2	183730988	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10	4116801	183730988	59468385	12	8296											
PARP9	83666	hgsc.bcm.edu	37	3	122277192	122277192	+	Silent	SNP	G	G	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	122277192	G	T	122277192	2	4	133	1	0	0	0	0	0	0	0	1	11473	1161	41	4		4	PARP9	3	122277192	Silent	SNP	G	TCGA-B0-4844-01A-01D-1361-10		122277192	75745238	13	8297											
HLTF	6596	hgsc.bcm.edu	37	3	148766680	148766680	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	148766680	A	T	148766680	3	4	133	1	0	0	0	0	1	0	0	0	7222	69	3	5	1343	5	HLTF	3	148766680	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10	26489488	148766680	49255750	14	8298											
WDR49	151790	hgsc.bcm.edu	37	3	167250750	167250750	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	167250750	T	G	167250750	3	3	133	1	0	0	0	0	1	0	0	0	17314	1783	62	5	1211	5	WDR49	3	167250750	Missense_Mutation	SNP	T	TCGA-B0-4844-01A-01D-1361-10	18484070	167250750	30771680	15	8299											
GRIA2	2891	hgsc.bcm.edu	37	4	158257863	158257863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	158257863	G	A	158257863	3	1	133	1	0	0	0	0	1	0	0	0	6775	1261	44	2	1850	2	GRIA2	4	158257863	Missense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10		158257863	32896413	16	8300											
TMEM161B	153396	hgsc.bcm.edu	37	5	87516401	87516401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	87516401	A	G	87516401	3	3	133	1	0	0	0	0	1	0	0	0	16089	420	15	3	1070	3	TMEM161B	5	87516401	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10		87516401	93398859	17	8301											
SEPT8	23176	hgsc.bcm.edu;ucsc.edu	37	5	132096903	132096903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	132096903	C	A	132096903	3	1	133	1	0	0	0	0	1	0	0	0	14083	854	30	4	501	4	SEPT8	5	132096903	Missense_Mutation	SNP	C	TCGA-B0-4844-01A-01D-1361-10	44580502	132096903	48818357	18	8302											
SYNE1	23345	hgsc.bcm.edu;ucsc.edu	37	6	152779924	152779924	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	152779924	G	A	152779924	4	1	133	1	0	0	0	0	0	1	0	0	15457	1386	48	2	24430	2	SYNE1	6	152779924	Nonsense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10		152779924	18335143	19	8303											
TTLL2	83887	hgsc.bcm.edu	37	6	167753863	167753863	+	Silent	SNP	T	T	C	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	C	167753863	T	C	167753863	2	2	133	1	0	0	0	0	0	0	0	1	16739	1838	64	3		3	TTLL2	6	167753863	Silent	SNP	T	TCGA-B0-4844-01A-01D-1361-10	14973939	167753863	3361204	20	8304											
DBNL	28988	hgsc.bcm.edu	37	7	44099692	44099692	+	Missense_Mutation	SNP	C	C	A	rs151003280	alternate_allele	TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	44099692	C	A	44099692	3	1	133	1	0	0	0	0	1	0	0	0	4257	827	29	4	1166	4	DBNL	7	44099692	Missense_Mutation	SNP	C	TCGA-B0-4844-01A-01D-1361-10		44099692	115038971	21	8305											
ASB15	142685	hgsc.bcm.edu;ucsc.edu	37	7	123257653	123257653	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	123257653	G	T	123257653	4	4	133	1	0	0	0	0	0	1	0	0	1019	1175	41	4	327	4	ASB15	7	123257653	Nonsense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10	79157961	123257653	35881010	22	8306											
TACC1	6867	hgsc.bcm.edu;ucsc.edu	37	8	38684806	38684806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	38684806	G	A	38684806	3	1	133	1	0	0	0	0	1	0	0	0	15513	1000	35	2	1591	2	TACC1	8	38684806	Missense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10		38684806	107679216	23	8307											
RCL1	10171	hgsc.bcm.edu;ucsc.edu	37	9	4849485	4849485	+	Silent	SNP	A	A	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	4849485	A	G	4849485	2	3	133	1	0	0	0	0	0	0	0	1	13191	378	14	3		3	RCL1	9	4849485	Silent	SNP	A	TCGA-B0-4844-01A-01D-1361-10		4849485	136363946	24	8308											
NOTCH1	4851	hgsc.bcm.edu	37	9	139409100	139409100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	139409100	C	A	139409100	3	1	133	1	0	0	0	0	1	0	0	0	10554	623	22	4	5686	4	NOTCH1	9	139409100	Missense_Mutation	SNP	C	TCGA-B0-4844-01A-01D-1361-10	134559615	139409100	1804331	25	8309											
TBC1D12	23232	hgsc.bcm.edu	37	10	96281773	96281773	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	96281773	T	A	96281773	3	1	133	1	0	0	0	0	1	0	0	0	15613	1841	64	5	1861	5	TBC1D12	10	96281773	Missense_Mutation	SNP	T	TCGA-B0-4844-01A-01D-1361-10		96281773	39252974	26	8310											
DPYSL4	10570	hgsc.bcm.edu;ucsc.edu	37	10	134013907	134013907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	134013907	G	A	134013907	3	1	133	1	0	0	0	0	1	0	0	0	4751	1116	39	1	893	1	DPYSL4	10	134013907	Missense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10	37732134	134013907	1520840	27	8311											
OR10W1	81341	hgsc.bcm.edu;ucsc.edu	37	11	58035202	58035202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	58035202	T	G	58035202	3	3	133	1	0	0	0	0	1	0	0	0	10928	1838	64	5	792	5	OR10W1	11	58035202	Missense_Mutation	SNP	T	TCGA-B0-4844-01A-01D-1361-10		58035202	76971314	28	8312											
CTSW	1521	hgsc.bcm.edu	37	11	65650835	65650835	+	Silent	SNP	T	T	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	65650835	T	A	65650835	2	1	133	1	0	0	0	0	0	0	0	1	4044	1538	54	5		5	CTSW	11	65650835	Silent	SNP	T	TCGA-B0-4844-01A-01D-1361-10	7615633	65650835	69355681	29	8313											
RBM14	10432	hgsc.bcm.edu	37	11	66392256	66392256	+	Silent	SNP	C	C	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	66392256	C	T	66392256	2	4	133	1	0	0	0	0	0	0	0	1	13128	726	26	2		2	RBM14	11	66392256	Silent	SNP	C	TCGA-B0-4844-01A-01D-1361-10	741421	66392256	68614260	30	8314											
CCDC83	220047	hgsc.bcm.edu;ucsc.edu	37	11	85630410	85630410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	85630410	C	T	85630410	3	4	133	1	0	0	0	0	1	0	0	0	2859	623	22	2	1234	2	CCDC83	11	85630410	Missense_Mutation	SNP	C	TCGA-B0-4844-01A-01D-1361-10	19238154	85630410	49376106	31	8315											
CACNA1C	775	hgsc.bcm.edu	37	12	2786309	2786310	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	-	2786310	GT	-	2786309	7	5	133	1	0	1	0	1	0	0	0	0	2542	1020	36	0	5419	0	CACNA1C	12	2786309	Frame_Shift_Del	DEL	GT	TCGA-B0-4844-01A-01D-1361-10		2786309	131065586	32	8316											
LIN7A	8825	hgsc.bcm.edu	37	12	81239680	81239680	+	Silent	SNP	G	G	C	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	C	81239680	G	C	81239680	2	2	133	1	0	0	0	0	0	0	0	1	8817	1219	43	4		4	LIN7A	12	81239680	Silent	SNP	G	TCGA-B0-4844-01A-01D-1361-10	78453371	81239680	52612215	33	8317											
SPATA13	221178	hgsc.bcm.edu	37	13	24860482	24860482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	24860482	G	T	24860482	3	4	133	1	0	0	0	0	1	0	0	0	15012	1357	47	4	2450	4	SPATA13	13	24860482	Missense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10		24860482	90309396	34	8318											
IL16	3603	hgsc.bcm.edu;ucsc.edu	37	15	81582852	81582852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	81582852	G	T	81582852	3	4	133	1	0	0	0	0	1	0	0	0	7640	1174	41	4	1429	4	IL16	15	81582852	Missense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10		81582852	20948540	35	8319											
ITGAX	3687	hgsc.bcm.edu	37	16	31373161	31373161	+	Silent	SNP	G	G	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	31373161	G	T	31373161	2	4	133	1	0	0	0	0	0	0	0	1	7896	1103	39	4		4	ITGAX	16	31373161	Silent	SNP	G	TCGA-B0-4844-01A-01D-1361-10		31373161	58981592	36	8320											
GPR179	440435	hgsc.bcm.edu;ucsc.edu	37	17	36492024	36492024	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	36492024	T	A	36492024	3	1	133	1	0	0	0	0	1	0	0	0	6681	1435	50	5	5900	5	GPR179	17	36492024	Missense_Mutation	SNP	T	TCGA-B0-4844-01A-01D-1361-10		36492024	44703186	37	8321											
LAMA3	3909	hgsc.bcm.edu;ucsc.edu	37	18	21406683	21406683	+	Silent	SNP	C	C	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	21406683	C	A	21406683	2	1	133	1	0	0	0	0	0	0	0	1	8614	842	30	4		4	LAMA3	18	21406683	Silent	SNP	C	TCGA-B0-4844-01A-01D-1361-10		21406683	56670565	38	8322											
LAMA3	3909	hgsc.bcm.edu	37	18	21470048	21470048	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	C	21470048	G	C	21470048	3	2	133	1	0	0	0	0	1	0	0	0	8614	1348	47	4	5718	4	LAMA3	18	21470048	Missense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10	63365	21470048	56607200	39	8323											
LASS4	0	hgsc.bcm.edu	37	19	8316056	8316056	+	Silent	SNP	C	C	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	8316056	C	T	8316056	2	4	133	1	0	0	0	0	0	0	0	1	8648	900	32	2		2	LASS4	19	8316056	Silent	SNP	C	TCGA-B0-4844-01A-01D-1361-10		8316056	50812927	40	8324											
GPCPD1	56261	hgsc.bcm.edu;ucsc.edu	37	20	5559154	5559154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	5559154	C	A	5559154	3	1	133	1	0	0	0	0	1	0	0	0	6610	884	31	4	1493	4	GPCPD1	20	5559154	Missense_Mutation	SNP	C	TCGA-B0-4844-01A-01D-1361-10		5559154	57466366	41	8325											
PLAGL2	5326	hgsc.bcm.edu	37	20	30785078	30785078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	30785078	T	A	30785078	3	1	133	1	0	0	0	0	1	0	0	0	12027	1638	57	5	826	5	PLAGL2	20	30785078	Missense_Mutation	SNP	T	TCGA-B0-4844-01A-01D-1361-10	25225924	30785078	32240442	42	8326											
SAMHD1	25939	hgsc.bcm.edu;ucsc.edu	37	20	35547821	35547821	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	35547821	G	T	35547821	4	4	133	1	0	0	0	0	0	1	0	0	13841	963	34	4	1122	4	SAMHD1	20	35547821	Nonsense_Mutation	SNP	G	TCGA-B0-4844-01A-01D-1361-10	4762743	35547821	27477699	43	8327											
RNF160	0	hgsc.bcm.edu	37	21	30331797	30331797	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	30331797	T	G	30331797	3	3	133	1	0	0	0	0	1	0	0	0	13468	1783	62	5	2796	5	RNF160	21	30331797	Missense_Mutation	SNP	T	TCGA-B0-4844-01A-01D-1361-10		30331797	17798098	44	8328											
MICAL3	57553	hgsc.bcm.edu;ucsc.edu	37	22	18362165	18362165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	18362165	A	G	18362165	3	3	133	1	0	0	0	0	1	0	0	0	9578	449	16	3	4461	3	MICAL3	22	18362165	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10		18362165	32942401	45	8329											
USP18	11274	hgsc.bcm.edu	37	22	18640563	18640563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	T	18640563	C	T	18640563	3	4	133	1	0	0	0	0	1	0	0	0	17061	855	30	2	135	2	USP18	22	18640563	Missense_Mutation	SNP	C	TCGA-B0-4844-01A-01D-1361-10	278398	18640563	32664003	46	8330											
KDM5C	8242	hgsc.bcm.edu;ucsc.edu	37	X	53228214	53228214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	G	53228214	A	G	53228214	3	3	133	1	0	0	0	0	1	0	0	0	8142	188	7	3	2640	3	KDM5C	23	53228214	Missense_Mutation	SNP	A	TCGA-B0-4844-01A-01D-1361-10		53228214	102042346	47	8331											
LAS1L	81887	hgsc.bcm.edu	37	X	64744051	64744051	+	Silent	SNP	C	C	A	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	A	64744051	C	A	64744051	2	1	133	1	0	0	0	0	0	0	0	1	8643	755	27	4		4	LAS1L	23	64744051	Silent	SNP	C	TCGA-B0-4844-01A-01D-1361-10	11515837	64744051	90526509	48	8332											
PAK3	5063	hgsc.bcm.edu;ucsc.edu	37	X	110366370	110366370	+	Silent	SNP	T	T	C	novel		TCGA-B0-4844-01A-01D-1361-10	TCGA-B0-4844-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18380381-0840-47ff-994c-65319715a6d4	8921941b-fa48-475f-bb96-633d4b44aca0	C	110366370	T	C	110366370	2	2	133	1	0	0	0	0	0	0	0	1	11409	1538	54	3		3	PAK3	23	110366370	Silent	SNP	T	TCGA-B0-4844-01A-01D-1361-10	45622319	110366370	44904190	49	8333											
PRDM16	63976	hgsc.bcm.edu	37	1	3321338	3321338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	3321338	G	A	3321338	3	1	134	1	0	0	0	0	1	0	0	0	12467	1087	38	1	946	1	PRDM16	1	3321338	Missense_Mutation	SNP	G	TCGA-B0-4845-01A-01D-1361-10		3321338	245929283	1	8334											
LDLRAD2	401944	hgsc.bcm.edu;ucsc.edu	37	1	22148091	22148091	+	Silent	SNP	C	C	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	22148091	C	T	22148091	2	4	134	1	0	0	0	0	0	0	0	1	8713	535	19	1		1	LDLRAD2	1	22148091	Silent	SNP	C	TCGA-B0-4845-01A-01D-1361-10	18826753	22148091	227102530	2	8335											
DAB1	1600	hgsc.bcm.edu;ucsc.edu	37	1	57476856	57476856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	57476856	C	T	57476856	3	4	134	1	0	0	0	0	1	0	0	0	4219	623	22	2	141	2	DAB1	1	57476856	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	35328765	57476856	191773765	3	8336											
JAK1	3716	hgsc.bcm.edu;ucsc.edu	37	1	65335066	65335066	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	65335066	A	T	65335066	3	4	134	1	0	0	0	0	1	0	0	0	7944	217	8	5	2969	5	JAK1	1	65335066	Missense_Mutation	SNP	A	TCGA-B0-4845-01A-01D-1361-10	7858210	65335066	183915555	4	8337											
ATP1A2	477	hgsc.bcm.edu;ucsc.edu	37	1	160109458	160109458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	160109458	G	A	160109458	3	1	134	1	0	0	0	0	1	0	0	0	1129	1175	41	2	2951	2	ATP1A2	1	160109458	Missense_Mutation	SNP	G	TCGA-B0-4845-01A-01D-1361-10	94774392	160109458	89141163	5	8338											
NUF2	83540	hgsc.bcm.edu	37	1	163309266	163309266	+	Missense_Mutation	SNP	C	C	T	rs144627000		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	163309266	C	T	163309266	3	4	134	1	0	0	0	0	1	0	0	0	10754	550	19	1	631	1	NUF2	1	163309266	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	3199808	163309266	85941355	6	8339											
PROM2	150696	hgsc.bcm.edu	37	2	95947011	95947011	+	Silent	SNP	C	C	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	95947011	C	G	95947011	2	3	134	1	0	0	0	0	0	0	0	1	12566	900	32	4		4	PROM2	2	95947011	Silent	SNP	C	TCGA-B0-4845-01A-01D-1361-10		95947011	147252362	7	8340											
LONRF2	164832	hgsc.bcm.edu;ucsc.edu	37	2	100906805	100906805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	100906805	A	G	100906805	3	3	134	1	0	0	0	0	1	0	0	0	8902	101	4	3	441	3	LONRF2	2	100906805	Missense_Mutation	SNP	A	TCGA-B0-4845-01A-01D-1361-10	4959794	100906805	142292568	8	8341											
PTPN18	26469	hgsc.bcm.edu;ucsc.edu	37	2	131128530	131128530	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	131128530	T	G	131128530	3	3	134	1	0	0	0	0	1	0	0	0	12795	1435	50	5	959	5	PTPN18	2	131128530	Missense_Mutation	SNP	T	TCGA-B0-4845-01A-01D-1361-10	30221725	131128530	112070843	9	8342											
BAZ2B	29994	hgsc.bcm.edu;ucsc.edu	37	2	160289731	160289731	+	Silent	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	160289731	G	A	160289731	2	1	134	1	0	0	0	0	0	0	0	1	1332	1252	44	2		2	BAZ2B	2	160289731	Silent	SNP	G	TCGA-B0-4845-01A-01D-1361-10	29161201	160289731	82909642	10	8343											
CD302	9936	hgsc.bcm.edu;ucsc.edu	37	2	160628387	160628387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	C	160628387	T	C	160628387	3	2	134	1	0	0	0	0	1	0	0	0	3005	1493	52	3	28	3	CD302	2	160628387	Missense_Mutation	SNP	T	TCGA-B0-4845-01A-01D-1361-10	338656	160628387	82570986	11	8344											
KIF1A	547	hgsc.bcm.edu;ucsc.edu	37	2	241722488	241722488	+	Silent	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	241722488	G	A	241722488	2	1	134	1	0	0	0	0	0	0	0	1	8290	1306	46	2		2	KIF1A	2	241722488	Silent	SNP	G	TCGA-B0-4845-01A-01D-1361-10	81094101	241722488	1476885	12	8345											
NEK10	152110	hgsc.bcm.edu	37	3	27338698	27338698	+	Missense_Mutation	SNP	T	T	C	rs141057699	by1000genomes	TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	C	27338698	T	C	27338698	3	2	134	1	0	0	0	0	1	0	0	0	10329	1493	52	3	980	3	NEK10	3	27338698	Missense_Mutation	SNP	T	TCGA-B0-4845-01A-01D-1361-10		27338698	170683732	13	8346											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47144879	47144879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	47144879	C	T	47144879	3	4	134	1	0	0	0	0	1	0	0	0	14144	536	19	1	2880	1	SETD2	3	47144879	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	19806181	47144879	150877551	14	8347											
PBRM1	55193	ucsc.edu	37	3	52661376	52661387	+	Frame_Shift_Del	DEL	TTCTTCTTTGCC	TTCTTCTTTGCC	-	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	TTCTTCTTTGCC	TTCTTCTTTGCC	TTCTTCTTTGCC	-	TTCTTCTTTGCC	TTCTTCTTTGCC	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	-	52661387	TTCTTCTTTGCC	-	52661376	7	5	134	1	0	1	0	1	0	0	0	0	11498	1841	64	0	3518	0	PBRM1	3	52661376	Frame_Shift_Del	DEL	TTCTTCTTTGCC	TCGA-B0-4845-01A-01D-1361-10	5516497	52661376	145361054	15	8348			1	16		2	2	13	N	TTCTTCTTTGCC_T	2.015695e-05
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52661388	52661388	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	52661388	T	A	52661388	5	1	134	1	0	0	0	0	0	0	1	0	11498	1536	53	5	3530	5	PBRM1	3	52661388	Splice_Site	SNP	T	TCGA-B0-4845-01A-01D-1361-10	12	52661388	145361042	16	8349			1	16		2	2	13	N	TTCTTCTTTGCC_T	2.015695e-05
CPOX	1371	hgsc.bcm.edu	37	3	98311863	98311863	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	98311863	C	G	98311863	3	3	134	1	0	0	0	0	1	0	0	0	3823	680	24	4	906	4	CPOX	3	98311863	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	45650475	98311863	99710567	17	8350											
ABLIM2	84448	hgsc.bcm.edu	37	4	8108315	8108315	+	Silent	SNP	C	C	T	rs41266521	bycluster;byfrequency;by1000genomes	TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	8108315	C	T	8108315	2	4	134	1	0	0	0	0	0	0	0	1	95	639	23	1		1	ABLIM2	4	8108315	Silent	SNP	C	TCGA-B0-4845-01A-01D-1361-10		8108315	183045961	18	8351											
H2AFZ	3015	hgsc.bcm.edu;ucsc.edu	37	4	100869967	100869967	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	100869967	C	A	100869967	5	1	134	1	0	0	0	0	0	0	1	0	6938	521	18	4	68	4	H2AFZ	4	100869967	Splice_Site	SNP	C	TCGA-B0-4845-01A-01D-1361-10	92761652	100869967	90284309	19	8352											
DKK2	27123	hgsc.bcm.edu;ucsc.edu	37	4	107956637	107956637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	C	107956637	T	C	107956637	3	2	134	1	0	0	0	0	1	0	0	0	4547	1464	51	3	683	3	DKK2	4	107956637	Missense_Mutation	SNP	T	TCGA-B0-4845-01A-01D-1361-10	7086670	107956637	83197639	20	8353											
UGT8	7368	hgsc.bcm.edu;ucsc.edu	37	4	115597317	115597317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	115597317	A	T	115597317	3	4	134	1	0	0	0	0	1	0	0	0	16977	391	14	5	1517	5	UGT8	4	115597317	Missense_Mutation	SNP	A	TCGA-B0-4845-01A-01D-1361-10	7640680	115597317	75556959	21	8354											
RNF150	57484	hgsc.bcm.edu;ucsc.edu	37	4	141888943	141888943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	141888943	G	T	141888943	3	4	134	1	0	0	0	0	1	0	0	0	13464	1377	48	4	771	4	RNF150	4	141888943	Missense_Mutation	SNP	G	TCGA-B0-4845-01A-01D-1361-10	26291626	141888943	49265333	22	8355											
C4orf41	0	hgsc.bcm.edu;ucsc.edu	37	4	184615163	184615163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	184615163	C	T	184615163	3	4	134	1	0	0	0	0	1	0	0	0	2272	681	24	2	2562	2	C4orf41	4	184615163	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	42726220	184615163	6539113	23	8356											
COL19A1	1310	hgsc.bcm.edu;ucsc.edu	37	6	70852710	70852710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	70852710	G	A	70852710	3	1	134	1	0	0	0	0	1	0	0	0	3678	1377	48	2	1710	2	COL19A1	6	70852710	Missense_Mutation	SNP	G	TCGA-B0-4845-01A-01D-1361-10		70852710	100262357	24	8357											
SNX13	23161	hgsc.bcm.edu;ucsc.edu	37	7	17841262	17841262	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	17841262	C	G	17841262	3	3	134	1	0	0	0	0	1	0	0	0	14897	912	32	4	646	4	SNX13	7	17841262	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10		17841262	141297401	25	8358											
TRIL	9865	hgsc.bcm.edu;ucsc.edu	37	7	28997373	28997373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	28997373	G	A	28997373	3	1	134	1	0	0	0	0	1	0	0	0	16497	942	33	2	2149	2	TRIL	7	28997373	Missense_Mutation	SNP	G	TCGA-B0-4845-01A-01D-1361-10	11156111	28997373	130141290	26	8359											
CLDN4	1364	hgsc.bcm.edu	37	7	73245846	73245846	+	Silent	SNP	C	C	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	73245846	C	G	73245846	2	3	134	1	0	0	0	0	0	0	0	1	3489	581	21	4		4	CLDN4	7	73245846	Silent	SNP	C	TCGA-B0-4845-01A-01D-1361-10	44248473	73245846	85892817	27	8360											
TRIM56	81844	hgsc.bcm.edu	37	7	100731748	100731748	+	Silent	SNP	T	T	G	rs61730718	byfrequency;by1000genomes	TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	100731748	T	G	100731748	2	3	134	1	0	0	0	0	0	0	0	1	16542	1625	57	5		5	TRIM56	7	100731748	Silent	SNP	T	TCGA-B0-4845-01A-01D-1361-10	27485902	100731748	58406915	28	8361											
ATXN7L1	222255	hgsc.bcm.edu;ucsc.edu	37	7	105516948	105516948	+	Silent	SNP	T	T	C	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	C	105516948	T	C	105516948	2	2	134	1	0	0	0	0	0	0	0	1	1216	1567	55	3		3	ATXN7L1	7	105516948	Silent	SNP	T	TCGA-B0-4845-01A-01D-1361-10	4785200	105516948	53621715	29	8362											
DOCK4	9732	hgsc.bcm.edu	37	7	111508084	111508084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	111508084	G	T	111508084	3	4	134	1	0	0	0	0	1	0	0	0	4691	942	33	4	3788	4	DOCK4	7	111508084	Missense_Mutation	SNP	G	TCGA-B0-4845-01A-01D-1361-10	5991136	111508084	47630579	30	8363											
MCPH1	79648	hgsc.bcm.edu;ucsc.edu	37	8	6302310	6302310	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	C	6302310	G	C	6302310	3	2	134	1	0	0	0	0	1	0	0	0	9405	942	33	4	1097	4	MCPH1	8	6302310	Missense_Mutation	SNP	G	TCGA-B0-4845-01A-01D-1361-10		6302310	140061712	31	8364											
PCMTD1	115294	hgsc.bcm.edu;ucsc.edu	37	8	52773471	52773471	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	52773471	C	A	52773471	4	1	134	1	0	0	0	0	0	1	0	0	11593	690	24	4	852	4	PCMTD1	8	52773471	Nonsense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	46471161	52773471	93590551	32	8365											
NBN	4683	hgsc.bcm.edu	37	8	90983413	90983413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	90983413	C	A	90983413	3	1	134	1	0	0	0	0	1	0	0	0	10198	825	29	4	1618	4	NBN	8	90983413	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	38209942	90983413	55380609	33	8366											
KIAA1429	25962	hgsc.bcm.edu;ucsc.edu	37	8	95541534	95541534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	C	95541534	T	C	95541534	3	2	134	1	0	0	0	0	1	0	0	0	8238	1783	62	3	4920	3	KIAA1429	8	95541534	Missense_Mutation	SNP	T	TCGA-B0-4845-01A-01D-1361-10	4558121	95541534	50822488	34	8367											
MASTL	84930	hgsc.bcm.edu;ucsc.edu	37	10	27458935	27458935	+	Silent	SNP	A	A	C	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	C	27458935	A	C	27458935	2	2	134	1	0	0	0	0	0	0	0	1	9335	117	5	5		5	MASTL	10	27458935	Silent	SNP	A	TCGA-B0-4845-01A-01D-1361-10		27458935	108075812	35	8368											
ARMC4	55130	hgsc.bcm.edu;ucsc.edu	37	10	28233854	28233854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	28233854	G	A	28233854	3	1	134	1	0	0	0	0	1	0	0	0	953	1294	45	2	1750	2	ARMC4	10	28233854	Missense_Mutation	SNP	G	TCGA-B0-4845-01A-01D-1361-10	774919	28233854	107300893	36	8369											
F2	2147	hgsc.bcm.edu;ucsc.edu	37	11	46760838	46760838	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	46760838	T	G	46760838	4	3	134	1	0	0	0	0	0	1	0	0	5344	1442	50	5	1803	5	F2	11	46760838	Nonsense_Mutation	SNP	T	TCGA-B0-4845-01A-01D-1361-10		46760838	88245678	37	8370											
MAP4K2	5871	hgsc.bcm.edu;ucsc.edu	37	11	64564471	64564471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	64564471	G	T	64564471	3	4	134	1	0	0	0	0	1	0	0	0	9267	1232	43	4	1124	4	MAP4K2	11	64564471	Missense_Mutation	SNP	G	TCGA-B0-4845-01A-01D-1361-10	17803633	64564471	70442045	38	8371											
PCNXL3	399909	hgsc.bcm.edu;ucsc.edu	37	11	65396339	65396339	+	Silent	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	65396339	G	A	65396339	2	1	134	1	0	0	0	0	0	0	0	1	11600	1074	38	1		1	PCNXL3	11	65396339	Silent	SNP	G	TCGA-B0-4845-01A-01D-1361-10	831868	65396339	69610177	39	8372											
KDM5A	5927	hgsc.bcm.edu;ucsc.edu	37	12	419082	419082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	419082	T	A	419082	3	1	134	1	0	0	0	0	1	0	0	0	8140	1521	53	5	1835	5	KDM5A	12	419082	Missense_Mutation	SNP	T	TCGA-B0-4845-01A-01D-1361-10		419082	133432813	40	8373											
WNK1	65125	hgsc.bcm.edu;ucsc.edu	37	12	971279	971279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	971279	C	A	971279	3	1	134	1	0	0	0	0	1	0	0	0	17389	855	30	4	2012	4	WNK1	12	971279	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	552197	971279	132880616	41	8374											
C14orf37	145407	hgsc.bcm.edu;ucsc.edu	37	14	58471778	58471778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	58471778	C	A	58471778	3	1	134	1	0	0	0	0	1	0	0	0	1773	738	26	4	88	4	C14orf37	14	58471778	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10		58471778	48877762	42	8375											
NRXN3	9369	hgsc.bcm.edu;ucsc.edu	37	14	79432483	79432483	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	79432483	C	G	79432483	3	3	134	1	0	0	0	0	1	0	0	0	10674	738	26	4	1418	4	NRXN3	14	79432483	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	20960705	79432483	27917057	43	8376											
RAGE	0	hgsc.bcm.edu;ucsc.edu	37	14	102729952	102729952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	102729952	C	A	102729952	3	1	134	1	0	0	0	0	1	0	0	0	13019	840	29	4	1081	4	RAGE	14	102729952	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10	23297469	102729952	4619588	44	8377											
CHP	0	hgsc.bcm.edu;ucsc.edu	37	15	41571548	41571548	+	Silent	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	41571548	G	A	41571548	2	1	134	1	0	0	0	0	0	0	0	1	3368	1335	47	2		2	CHP	15	41571548	Silent	SNP	G	TCGA-B0-4845-01A-01D-1361-10		41571548	60959844	45	8378											
PIK3R6	146850	hgsc.bcm.edu;ucsc.edu	37	17	8722497	8722497	+	Silent	SNP	G	G	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	8722497	G	A	8722497	2	1	134	1	0	0	0	0	0	0	0	1	11930	1195	42	2		2	PIK3R6	17	8722497	Silent	SNP	G	TCGA-B0-4845-01A-01D-1361-10		8722497	72472713	46	8379											
EVPL	2125	hgsc.bcm.edu	37	17	74003640	74003640	+	Silent	SNP	C	C	T	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	T	74003640	C	T	74003640	2	4	134	1	0	0	0	0	0	0	0	1	5294	871	31	1		1	EVPL	17	74003640	Silent	SNP	C	TCGA-B0-4845-01A-01D-1361-10	65281143	74003640	7191570	47	8380											
MALT1	10892	hgsc.bcm.edu;ucsc.edu	37	18	56414893	56414893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	56414893	C	G	56414893	3	3	134	1	0	0	0	0	1	0	0	0	9209	681	24	4	2360	4	MALT1	18	56414893	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10		56414893	21662355	48	8381											
VN1R4	317703	hgsc.bcm.edu;ucsc.edu	37	19	53770021	53770021	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	A	53770021	T	A	53770021	4	1	134	1	0	0	0	0	0	1	0	0	17192	1792	62	5	10	5	VN1R4	19	53770021	Nonsense_Mutation	SNP	T	TCGA-B0-4845-01A-01D-1361-10		53770021	5358962	49	8382											
CDH4	1002	hgsc.bcm.edu	37	20	60498753	60498753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	60498753	A	G	60498753	3	3	134	1	0	0	0	0	1	0	0	0	3114	188	7	3	1657	3	CDH4	20	60498753	Missense_Mutation	SNP	A	TCGA-B0-4845-01A-01D-1361-10		60498753	2526767	50	8383											
BCR	613	hgsc.bcm.edu	37	22	23523338	23523338	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	23523338	C	G	23523338	3	3	134	1	0	0	0	0	1	0	0	0	1388	739	26	4	193	4	BCR	22	23523338	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10		23523338	27781228	51	8384											
TBC1D8B	54885	hgsc.bcm.edu;ucsc.edu	37	X	106116882	106116882	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4845-01A-01D-1361-10	TCGA-B0-4845-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	058df83c-1fa7-45a8-b55a-dab0cab596c1	2781b569-81d7-4f96-baaf-ca6b30b4baeb	G	106116882	C	G	106116882	3	3	134	1	0	0	0	0	1	0	0	0	15638	797	28	4	3198	4	TBC1D8B	23	106116882	Missense_Mutation	SNP	C	TCGA-B0-4845-01A-01D-1361-10		106116882	49153678	52	8385											
VHL	7428	hgsc.bcm.edu	37	3	10183794	10183794	+	Nonsense_Mutation	SNP	G	G	A	rs119103277	alternate_allele	TCGA-B0-4845-01A-01W-1359-10	TCGA-B0-4845-11A-01D-2279-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	6262bfe5-6b54-4461-a4dd-fe4d910e4164	13825051-a2a4-4f7b-af1b-fb223197630e	A	10183794	G	A	10183794	4	1	135	1	0	0	0	0	0	1	0	0	17174	1357	47	2	265	2	VHL	3	10183794	Nonsense_Mutation	SNP	G	TCGA-B0-4845-01A-01W-1359-10		10183794	187838636	1	8386											
MTOR	2475	hgsc.bcm.edu;ucsc.edu	37	1	11189847	11189847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	11189847	A	T	11189847	3	4	136	1	0	0	0	0	1	0	0	0	9961	72	3	5	2063	5	MTOR	1	11189847	Missense_Mutation	SNP	A	TCGA-B0-4846-01A-01D-1361-10		11189847	238060774	1	8387											
FAF1	11124	hgsc.bcm.edu;ucsc.edu	37	1	50941223	50941223	+	Silent	SNP	G	G	A	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	A	50941223	G	A	50941223	2	1	136	1	0	0	0	0	0	0	0	1	5373	1368	48	2		2	FAF1	1	50941223	Silent	SNP	G	TCGA-B0-4846-01A-01D-1361-10	39751376	50941223	198309398	2	8388											
PTGFR	5737	hgsc.bcm.edu;ucsc.edu	37	1	78958563	78958563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	G	78958563	C	G	78958563	3	3	136	1	0	0	0	0	1	0	0	0	12760	738	26	4	137	4	PTGFR	1	78958563	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10	28017340	78958563	170292058	3	8389											
PKN2	5586	hgsc.bcm.edu;ucsc.edu	37	1	89298945	89298945	+	Silent	SNP	T	T	C	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	C	89298945	T	C	89298945	2	2	136	1	0	0	0	0	0	0	0	1	11987	1538	54	3		3	PKN2	1	89298945	Silent	SNP	T	TCGA-B0-4846-01A-01D-1361-10	10340382	89298945	159951676	4	8390											
AMY1B	277	hgsc.bcm.edu	37	1	104238207	104238207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	G	104238207	A	G	104238207	3	3	136	1	0	0	0	0	1	0	0	0	592	304	11	3	3096	3	AMY1B	1	104238207	Missense_Mutation	SNP	A	TCGA-B0-4846-01A-01D-1361-10	14939262	104238207	145012414	5	8391											
SLC25A44	9673	hgsc.bcm.edu;ucsc.edu	37	1	156169866	156169866	+	Silent	SNP	G	G	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	156169866	G	T	156169866	2	4	136	1	0	0	0	0	0	0	0	1	14522	1248	44	4		4	SLC25A44	1	156169866	Silent	SNP	G	TCGA-B0-4846-01A-01D-1361-10	51931659	156169866	93080755	6	8392											
TNN	63923	hgsc.bcm.edu	37	1	175053032	175053032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	175053032	C	T	175053032	3	4	136	1	0	0	0	0	1	0	0	0	16335	739	26	2	1209	2	TNN	1	175053032	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10	18883166	175053032	74197589	7	8393											
MAP4K3	8491	hgsc.bcm.edu;ucsc.edu	37	2	39552914	39552914	+	Missense_Mutation	SNP	G	G	A	rs182117796	by1000genomes	TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	A	39552914	G	A	39552914	3	1	136	1	0	0	0	0	1	0	0	0	9268	1261	44	2	2016	2	MAP4K3	2	39552914	Missense_Mutation	SNP	G	TCGA-B0-4846-01A-01D-1361-10		39552914	203646459	8	8394											
BBX	56987	hgsc.bcm.edu;ucsc.edu	37	3	107429337	107429337	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	G	107429337	T	G	107429337	3	3	136	1	0	0	0	0	1	0	0	0	1343	1490	52	5	32	5	BBX	3	107429337	Missense_Mutation	SNP	T	TCGA-B0-4846-01A-01D-1361-10		107429337	90593093	9	8395											
PARP15	165631	hgsc.bcm.edu;ucsc.edu	37	3	122324838	122324838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	A	122324838	C	A	122324838	3	1	136	1	0	0	0	0	1	0	0	0	11466	797	28	4	248	4	PARP15	3	122324838	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10	14895501	122324838	75697592	10	8396											
TOPBP1	11073	hgsc.bcm.edu;ucsc.edu	37	3	133347540	133347540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	133347540	C	T	133347540	3	4	136	1	0	0	0	0	1	0	0	0	16381	797	28	2	2066	2	TOPBP1	3	133347540	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10	11022702	133347540	64674890	11	8397											
ADCY2	108	hgsc.bcm.edu;ucsc.edu	37	5	7706858	7706858	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	7706858	A	T	7706858	4	4	136	1	0	0	0	0	0	1	0	0	294	260	9	5	1141	5	ADCY2	5	7706858	Nonsense_Mutation	SNP	A	TCGA-B0-4846-01A-01D-1361-10		7706858	173208402	12	8398											
RGNEF	0	hgsc.bcm.edu;ucsc.edu	37	5	73144821	73144821	+	Silent	SNP	T	T	C	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	C	73144821	T	C	73144821	2	2	136	1	0	0	0	0	0	0	0	1	13296	1770	62	3		3	RGNEF	5	73144821	Silent	SNP	T	TCGA-B0-4846-01A-01D-1361-10	65437963	73144821	107770439	13	8399											
RIOK1	83732	hgsc.bcm.edu;ucsc.edu	37	6	7410657	7410657	+	Silent	SNP	G	G	A	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	A	7410657	G	A	7410657	2	1	136	1	0	0	0	0	0	0	0	1	13390	1248	44	2		2	RIOK1	6	7410657	Silent	SNP	G	TCGA-B0-4846-01A-01D-1361-10		7410657	163704410	14	8400											
FBXO9	26268	hgsc.bcm.edu	37	6	52957228	52957228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	52957228	G	T	52957228	3	4	136	1	0	0	0	0	1	0	0	0	5769	956	33	4	718	4	FBXO9	6	52957228	Missense_Mutation	SNP	G	TCGA-B0-4846-01A-01D-1361-10	45546571	52957228	118157839	15	8401											
C7orf11	0	hgsc.bcm.edu;ucsc.edu	37	7	40172756	40172756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	40172756	G	T	40172756	3	4	136	1	0	0	0	0	1	0	0	0	2379	1174	41	4	101	4	C7orf11	7	40172756	Missense_Mutation	SNP	G	TCGA-B0-4846-01A-01D-1361-10		40172756	118965907	16	8402											
TGS1	96764	hgsc.bcm.edu	37	8	56717519	56717519	+	Silent	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	56717519	C	T	56717519	2	4	136	1	0	0	0	0	0	0	0	1	15849	825	29	2		2	TGS1	8	56717519	Silent	SNP	C	TCGA-B0-4846-01A-01D-1361-10		56717519	89646503	17	8403											
WWP1	11059	hgsc.bcm.edu;ucsc.edu	37	8	87424056	87424056	+	Silent	SNP	T	T	C	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	C	87424056	T	C	87424056	2	2	136	1	0	0	0	0	0	0	0	1	17427	1567	55	3		3	WWP1	8	87424056	Silent	SNP	T	TCGA-B0-4846-01A-01D-1361-10	30706537	87424056	58939966	18	8404											
KIAA1797	0	hgsc.bcm.edu;ucsc.edu	37	9	20758088	20758088	+	Splice_Site	SNP	G	G	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	20758088	G	T	20758088	5	4	136	1	0	0	0	0	0	0	1	0	8265	956	33	4	410	4	KIAA1797	9	20758088	Splice_Site	SNP	G	TCGA-B0-4846-01A-01D-1361-10		20758088	120455343	19	8405											
IARS	3376	hgsc.bcm.edu;ucsc.edu	37	9	95050488	95050488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	95050488	C	T	95050488	3	4	136	1	0	0	0	0	1	0	0	0	7480	913	32	2	3720	2	IARS	9	95050488	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10	74292400	95050488	46162943	20	8406											
SUPV3L1	6832	hgsc.bcm.edu;ucsc.edu	37	10	70960220	70960220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	C	70960220	A	C	70960220	3	2	136	1	0	0	0	0	1	0	0	0	15414	15	1	5	1525	5	SUPV3L1	10	70960220	Missense_Mutation	SNP	A	TCGA-B0-4846-01A-01D-1361-10		70960220	64574527	21	8407											
FAR1	84188	hgsc.bcm.edu;ucsc.edu	37	11	13734516	13734516	+	Silent	SNP	A	A	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	13734516	A	T	13734516	2	4	136	1	0	0	0	0	0	0	0	1	5681	117	5	5		5	FAR1	11	13734516	Silent	SNP	A	TCGA-B0-4846-01A-01D-1361-10		13734516	121272000	22	8408											
FERMT3	83706	hgsc.bcm.edu;ucsc.edu	37	11	63990880	63990880	+	Silent	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	63990880	C	T	63990880	2	4	136	1	0	0	0	0	0	0	0	1	5826	854	30	2		2	FERMT3	11	63990880	Silent	SNP	C	TCGA-B0-4846-01A-01D-1361-10	50256364	63990880	71015636	23	8409											
TRIM29	23650	hgsc.bcm.edu	37	11	119996484	119996484	+	Silent	SNP	C	C	G	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	G	119996484	C	G	119996484	2	3	136	1	0	0	0	0	0	0	0	1	16515	697	25	4		4	TRIM29	11	119996484	Silent	SNP	C	TCGA-B0-4846-01A-01D-1361-10	56005604	119996484	15010032	24	8410											
VPS26B	112936	hgsc.bcm.edu	37	11	134095128	134095128	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	G	134095128	T	G	134095128	3	3	136	1	0	0	0	0	1	0	0	0	17210	1841	64	5	114	5	VPS26B	11	134095128	Missense_Mutation	SNP	T	TCGA-B0-4846-01A-01D-1361-10	14098644	134095128	911388	25	8411											
ADAMTS20	80070	hgsc.bcm.edu;ucsc.edu	37	12	43819454	43819454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	43819454	C	T	43819454	3	4	136	1	0	0	0	0	1	0	0	0	266	478	17	2	1632	2	ADAMTS20	12	43819454	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10		43819454	90032441	26	8412											
KRT75	9119	hgsc.bcm.edu	37	12	52824455	52824455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	52824455	G	T	52824455	3	4	136	1	0	0	0	0	1	0	0	0	8495	1377	48	4	770	4	KRT75	12	52824455	Missense_Mutation	SNP	G	TCGA-B0-4846-01A-01D-1361-10	9005001	52824455	81027440	27	8413											
EXOSC8	11340	hgsc.bcm.edu;ucsc.edu	37	13	37580087	37580087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	37580087	C	T	37580087	3	4	136	1	0	0	0	0	1	0	0	0	5322	838	29	2	291	2	EXOSC8	13	37580087	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10		37580087	77589791	28	8414											
SYNE2	23224	hgsc.bcm.edu;ucsc.edu	37	14	64493398	64493399	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	G	64493399	-	G	64493398	7	5	136	1	0	1	1	0	0	0	0	0	15458	477	17	0	6516	0	SYNE2	14	64493398	Frame_Shift_Ins	INS	-	TCGA-B0-4846-01A-01D-1361-10		64493398	42856142	29	8415											
DICER1	23405	hgsc.bcm.edu;ucsc.edu	37	14	95582928	95582928	+	Silent	SNP	A	A	G	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	G	95582928	A	G	95582928	2	3	136	1	0	0	0	0	0	0	0	1	4523	98	4	3		3	DICER1	14	95582928	Silent	SNP	A	TCGA-B0-4846-01A-01D-1361-10	31089530	95582928	11766612	30	8416											
C15orf27	123591	hgsc.bcm.edu;ucsc.edu	37	15	76449034	76449034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	76449034	C	T	76449034	3	4	136	1	0	0	0	0	1	0	0	0	1790	739	26	2	327	2	C15orf27	15	76449034	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10		76449034	26082358	31	8417											
NOMO2	283820	hgsc.bcm.edu	37	16	18522873	18522873	+	Silent	SNP	C	C	T	rs10085	bycluster	TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	18522873	C	T	18522873	2	4	136	1	0	0	0	0	0	0	0	1	10539	523	19	1		1	NOMO2	16	18522873	Silent	SNP	C	TCGA-B0-4846-01A-01D-1361-10		18522873	71831880	32	8418											
LONP2	83752	hgsc.bcm.edu;ucsc.edu	37	16	48385510	48385510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	G	48385510	A	G	48385510	3	3	136	1	0	0	0	0	1	0	0	0	8900	131	5	3	2414	3	LONP2	16	48385510	Missense_Mutation	SNP	A	TCGA-B0-4846-01A-01D-1361-10	29862637	48385510	41969243	33	8419											
IRX6	79190	hgsc.bcm.edu	37	16	55360271	55360271	+	Silent	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	55360271	C	T	55360271	2	4	136	1	0	0	0	0	0	0	0	1	7855	709	25	2		2	IRX6	16	55360271	Silent	SNP	C	TCGA-B0-4846-01A-01D-1361-10	6974761	55360271	34994482	34	8420											
ADAMTS18	170692	hgsc.bcm.edu;ucsc.edu	37	16	77401389	77401389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	77401389	A	T	77401389	3	4	136	1	0	0	0	0	1	0	0	0	263	391	14	5	3018	5	ADAMTS18	16	77401389	Missense_Mutation	SNP	A	TCGA-B0-4846-01A-01D-1361-10	22041118	77401389	12953364	35	8421											
ABCC3	8714	hgsc.bcm.edu;ucsc.edu	37	17	48761334	48761334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	48761334	G	T	48761334	3	4	136	1	0	0	0	0	1	0	0	0	54	1203	42	4	4173	4	ABCC3	17	48761334	Missense_Mutation	SNP	G	TCGA-B0-4846-01A-01D-1361-10		48761334	32433876	36	8422											
AKAP1	8165	hgsc.bcm.edu	37	17	55184151	55184151	+	Silent	SNP	T	T	C	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	C	55184151	T	C	55184151	2	2	136	1	0	0	0	0	0	0	0	1	445	1770	62	3		3	AKAP1	17	55184151	Silent	SNP	T	TCGA-B0-4846-01A-01D-1361-10	6422817	55184151	26011059	37	8423											
SETBP1	26040	hgsc.bcm.edu;ucsc.edu	37	18	42281648	42281648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	42281648	G	T	42281648	3	4	136	1	0	0	0	0	1	0	0	0	14142	1203	42	4	339	4	SETBP1	18	42281648	Missense_Mutation	SNP	G	TCGA-B0-4846-01A-01D-1361-10		42281648	35795600	38	8424											
CPAMD8	27151	hgsc.bcm.edu	37	19	17104239	17104239	+	Missense_Mutation	SNP	T	T	C	rs151335087	by1000genomes	TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	C	17104239	T	C	17104239	3	2	136	1	0	0	0	0	1	0	0	0	3797	1696	59	3	4528	3	CPAMD8	19	17104239	Missense_Mutation	SNP	T	TCGA-B0-4846-01A-01D-1361-10		17104239	42024744	39	8425											
PDE4C	5143	hgsc.bcm.edu	37	19	18327665	18327665	+	Silent	SNP	C	C	A	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	A	18327665	C	A	18327665	2	1	136	1	0	0	0	0	0	0	0	1	11648	581	21	4		4	PDE4C	19	18327665	Silent	SNP	C	TCGA-B0-4846-01A-01D-1361-10	1223426	18327665	40801318	40	8426											
BFSP1	631	hgsc.bcm.edu;ucsc.edu	37	20	17475631	17475631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	A	17475631	T	A	17475631	3	1	136	1	0	0	0	0	1	0	0	0	1415	1664	58	5	915	5	BFSP1	20	17475631	Missense_Mutation	SNP	T	TCGA-B0-4846-01A-01D-1361-10		17475631	45549889	41	8427											
C22orf30	0	hgsc.bcm.edu;ucsc.edu	37	22	32113207	32113207	+	Silent	SNP	C	C	G	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	G	32113207	C	G	32113207	2	3	136	1	0	0	0	0	0	0	0	1	2144	842	30	4		4	C22orf30	22	32113207	Silent	SNP	C	TCGA-B0-4846-01A-01D-1361-10		32113207	19191359	42	8428											
P2RY8	286530	hgsc.bcm.edu	37	X	1585211	1585211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	C	1585211	A	C	1585211	3	2	136	1	0	0	0	0	1	0	0	0	11362	420	15	5	842	5	P2RY8	23	1585211	Missense_Mutation	SNP	A	TCGA-B0-4846-01A-01D-1361-10		1585211	153685349	43	8429											
UPF3B	65109	hgsc.bcm.edu;ucsc.edu	37	X	118974623	118974623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	T	118974623	C	T	118974623	3	4	136	1	0	0	0	0	1	0	0	0	17018	478	17	2	635	2	UPF3B	23	118974623	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10	117389412	118974623	36295937	44	8430											
LAMP2	3920	hgsc.bcm.edu;ucsc.edu	37	X	119581775	119581775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4846-01A-01D-1361-10	TCGA-B0-4846-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	808ee2fa-13a3-49c1-9814-622ece3fad6a	0f9057ba-aca4-4d39-b624-9a8e1464beed	A	119581775	C	A	119581775	3	1	136	1	0	0	0	0	1	0	0	0	8625	855	30	4	881	4	LAMP2	23	119581775	Missense_Mutation	SNP	C	TCGA-B0-4846-01A-01D-1361-10	607152	119581775	35688785	45	8431											
LUZP1	7798	hgsc.bcm.edu;ucsc.edu	37	1	23418897	23418897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	G	23418897	A	G	23418897	3	3	137	1	0	0	0	0	1	0	0	0	9093	246	9	3	1380	3	LUZP1	1	23418897	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10		23418897	225831724	1	8432											
HS2ST1	9653	hgsc.bcm.edu	37	1	87380814	87380814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	G	87380814	A	G	87380814	3	3	137	1	0	0	0	0	1	0	0	0	7369	188	7	3	97	3	HS2ST1	1	87380814	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10	63961917	87380814	161869807	2	8433											
HCN3	57657	hgsc.bcm.edu;ucsc.edu	37	1	155256964	155256964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	G	155256964	A	G	155256964	3	3	137	1	0	0	0	0	1	0	0	0	7005	318	11	3	1504	3	HCN3	1	155256964	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10	67876150	155256964	93993657	3	8434											
ACTN2	88	hgsc.bcm.edu;ucsc.edu	37	1	236912534	236912534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	236912534	G	T	236912534	3	4	137	1	0	0	0	0	1	0	0	0	205	1377	48	4	1680	4	ACTN2	1	236912534	Missense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10	81655570	236912534	12338087	4	8435											
WDR35	57539	hgsc.bcm.edu	37	2	20133224	20133224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	20133224	T	A	20133224	3	1	137	1	0	0	0	0	1	0	0	0	17301	1667	58	5	940	5	WDR35	2	20133224	Missense_Mutation	SNP	T	TCGA-B0-4847-01A-01D-1361-10		20133224	223066149	5	8436											
PLEKHH2	130271	hgsc.bcm.edu	37	2	43991494	43991494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	43991494	C	A	43991494	3	1	137	1	0	0	0	0	1	0	0	0	12084	710	25	4	4396	4	PLEKHH2	2	43991494	Missense_Mutation	SNP	C	TCGA-B0-4847-01A-01D-1361-10	23858270	43991494	199207879	6	8437											
SNRNP27	11017	hgsc.bcm.edu;ucsc.edu	37	2	70124540	70124540	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	C	70124540	A	C	70124540	3	2	137	1	0	0	0	0	1	0	0	0	14867	11	1	5	314	5	SNRNP27	2	70124540	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10	26133046	70124540	173074833	7	8438											
BAZ2B	29994	hgsc.bcm.edu;ucsc.edu	37	2	160289486	160289486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	160289486	C	T	160289486	3	4	137	1	0	0	0	0	1	0	0	0	1332	565	20	2	4940	2	BAZ2B	2	160289486	Missense_Mutation	SNP	C	TCGA-B0-4847-01A-01D-1361-10	90164946	160289486	82909887	8	8439	86	2									
BAZ2B	29994	hgsc.bcm.edu;ucsc.edu	37	2	160289488	160289488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	160289488	A	T	160289488	3	4	137	1	0	0	0	0	1	0	0	0	1332	446	16	5	4942	5	BAZ2B	2	160289488	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10	2	160289488	82909885	9	8440	86	2									
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191572	10191572	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	10191572	G	T	10191572	4	4	137	1	0	0	0	0	0	1	0	0	17174	1175	41	4	575	4	VHL	3	10191572	Nonsense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10		10191572	187830858	10	8441											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52643328	52643328	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	52643328	C	T	52643328	5	4	137	1	0	0	0	0	0	0	1	0	11498	521	18	2	2392	2	PBRM1	3	52643328	Splice_Site	SNP	C	TCGA-B0-4847-01A-01D-1361-10	42451756	52643328	145379102	11	8442											
DZIP1L	199221	hgsc.bcm.edu;ucsc.edu	37	3	137787177	137787177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	137787177	C	T	137787177	3	4	137	1	0	0	0	0	1	0	0	0	4866	922	32	2	671	2	DZIP1L	3	137787177	Missense_Mutation	SNP	C	TCGA-B0-4847-01A-01D-1361-10	85143849	137787177	60235253	12	8443											
MUC4	4585	hgsc.bcm.edu	37	3	195510773	195510773	+	Missense_Mutation	SNP	A	A	G	rs2911272	bycluster;byfrequency	TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	G	195510773	A	G	195510773	3	3	137	1	0	0	0	0	1	0	0	0	9985	304	11	3		3	MUC4	3	195510773	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10	57723596	195510773	2511657	13	8444											
TET2	54790	hgsc.bcm.edu;ucsc.edu	37	4	106156075	106156075	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	106156075	A	T	106156075	4	4	137	1	0	0	0	0	0	1	0	0	15782	15	1	5	978	5	TET2	4	106156075	Nonsense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10		106156075	84998201	14	8445											
SLC27A6	28965	hgsc.bcm.edu;ucsc.edu	37	5	128302059	128302059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	128302059	G	A	128302059	3	1	137	1	0	0	0	0	1	0	0	0	14543	1233	43	2	231	2	SLC27A6	5	128302059	Missense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10		128302059	52613201	15	8446											
DSP	1832	hgsc.bcm.edu	37	6	7559606	7559606	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	C	7559606	A	C	7559606	3	2	137	1	0	0	0	0	1	0	0	0	4783	98	4	5	584	5	DSP	6	7559606	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10		7559606	163555461	16	8447											
FAM65B	9750	hgsc.bcm.edu;ucsc.edu	37	6	24843257	24843257	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	24843257	A	T	24843257	3	4	137	1	0	0	0	0	1	0	0	0	5607	304	11	5	1503	5	FAM65B	6	24843257	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10	17283651	24843257	146271810	17	8448											
RSPH10B	222967	hgsc.bcm.edu	37	7	5984721	5984721	+	Silent	SNP	C	C	T	rs71531348		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	5984721	C	T	5984721	2	4	137	1	0	0	0	0	0	0	0	1	13716	523	19	1		1	RSPH10B	7	5984721	Silent	SNP	C	TCGA-B0-4847-01A-01D-1361-10		5984721	153153942	18	8449											
RSPH10B2	728194	hgsc.bcm.edu	37	7	6806405	6806405	+	Missense_Mutation	SNP	T	T	C	rs71531350	bycluster	TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	C	6806405	T	C	6806405	3	2	137	1	0	0	0	0	1	0	0	0	13717	1406	49	3	3388	3	RSPH10B2	7	6806405	Missense_Mutation	SNP	T	TCGA-B0-4847-01A-01D-1361-10	821684	6806405	152332258	19	8450											
ABCA13	154664	hgsc.bcm.edu;ucsc.edu	37	7	48556371	48556371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	48556371	C	T	48556371	3	4	137	1	0	0	0	0	1	0	0	0	31	893	31	1	13726	1	ABCA13	7	48556371	Missense_Mutation	SNP	C	TCGA-B0-4847-01A-01D-1361-10	41749966	48556371	110582292	20	8451											
GRM3	2913	hgsc.bcm.edu	37	7	86416162	86416162	+	Missense_Mutation	SNP	C	C	T	rs184377536	by1000genomes	TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	86416162	C	T	86416162	3	4	137	1	0	0	0	0	1	0	0	0	6805	643	23	1	1060	1	GRM3	7	86416162	Missense_Mutation	SNP	C	TCGA-B0-4847-01A-01D-1361-10	37859791	86416162	72722501	21	8452											
EFCAB1	79645	hgsc.bcm.edu;ucsc.edu	37	8	49643118	49643118	+	Silent	SNP	A	A	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	49643118	A	T	49643118	2	4	137	1	0	0	0	0	0	0	0	1	4935	59	3	5		5	EFCAB1	8	49643118	Silent	SNP	A	TCGA-B0-4847-01A-01D-1361-10		49643118	96720904	22	8453											
KCNB2	9312	hgsc.bcm.edu	37	8	73849010	73849010	+	Missense_Mutation	SNP	G	G	A	rs140088625		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	73849010	G	A	73849010	3	1	137	1	0	0	0	0	1	0	0	0	8020	943	33	2	1426	2	KCNB2	8	73849010	Missense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10	24205892	73849010	72515012	23	8454											
SNX16	64089	hgsc.bcm.edu;ucsc.edu	37	8	82751992	82751992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	82751992	A	T	82751992	3	4	137	1	0	0	0	0	1	0	0	0	14900	14	1	5	832	5	SNX16	8	82751992	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10	8902982	82751992	63612030	24	8455											
ADCY8	114	hgsc.bcm.edu;ucsc.edu	37	8	131848556	131848556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	131848556	A	T	131848556	3	4	137	1	0	0	0	0	1	0	0	0	300	14	1	5	1141	5	ADCY8	8	131848556	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10	49096564	131848556	14515466	25	8456											
PTPN3	5774	hgsc.bcm.edu	37	9	112151594	112151594	+	Silent	SNP	G	G	C	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	C	112151594	G	C	112151594	2	2	137	1	0	0	0	0	0	0	0	1	12802	987	35	4		4	PTPN3	9	112151594	Silent	SNP	G	TCGA-B0-4847-01A-01D-1361-10		112151594	29061837	26	8457											
C5	727	hgsc.bcm.edu;ucsc.edu	37	9	123797085	123797085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	C	123797085	G	C	123797085	3	2	137	1	0	0	0	0	1	0	0	0	2282	1174	41	4	4598	4	C5	9	123797085	Missense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10	11645491	123797085	17416346	27	8458											
KRT82	3888	hgsc.bcm.edu	37	12	52797691	52797691	+	Silent	SNP	G	G	A	rs145667835		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	52797691	G	A	52797691	2	1	137	1	0	0	0	0	0	0	0	1	8503	1161	41	2		2	KRT82	12	52797691	Silent	SNP	G	TCGA-B0-4847-01A-01D-1361-10		52797691	81054204	28	8459											
LTA4H	4048	hgsc.bcm.edu	37	12	96421314	96421314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	G	96421314	A	G	96421314	3	3	137	1	0	0	0	0	1	0	0	0	9076	14	1	3	1584	3	LTA4H	12	96421314	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10	43623623	96421314	37430581	29	8460											
DNAH10	196385	hgsc.bcm.edu;ucsc.edu	37	12	124317763	124317763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	124317763	G	A	124317763	3	1	137	1	0	0	0	0	1	0	0	0	4600	1059	37	1	4396	1	DNAH10	12	124317763	Missense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10	27896449	124317763	9534132	30	8461											
KDELC1	79070	hgsc.bcm.edu;ucsc.edu	37	13	103450921	103450921	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	103450921	T	A	103450921	3	1	137	1	0	0	0	0	1	0	0	0	8124	1493	52	5	1448	5	KDELC1	13	103450921	Missense_Mutation	SNP	T	TCGA-B0-4847-01A-01D-1361-10		103450921	11718957	31	8462											
OR10G3	26533	hgsc.bcm.edu	37	14	22038056	22038056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	22038056	C	T	22038056	3	4	137	1	0	0	0	0	1	0	0	0	10907	710	25	2	124	2	OR10G3	14	22038056	Missense_Mutation	SNP	C	TCGA-B0-4847-01A-01D-1361-10		22038056	85311484	32	8463											
AHNAK2	113146	hgsc.bcm.edu	37	14	105408995	105408995	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	105408995	C	A	105408995	4	1	137	1	0	0	0	0	0	1	0	0	415	864	30	4	4598	4	AHNAK2	14	105408995	Nonsense_Mutation	SNP	C	TCGA-B0-4847-01A-01D-1361-10	83370939	105408995	1940545	33	8464											
GOLGA6A	342096	hgsc.bcm.edu	37	15	74370974	74370974	+	Silent	SNP	T	T	C	rs3869329		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	C	74370974	T	C	74370974	2	2	137	1	0	0	0	0	0	0	0	1	6564	1722	60	3		3	GOLGA6A	15	74370974	Silent	SNP	T	TCGA-B0-4847-01A-01D-1361-10		74370974	28160418	34	8465											
RASGRF1	5923	hgsc.bcm.edu;ucsc.edu	37	15	79356835	79356835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	79356835	G	T	79356835	3	4	137	1	0	0	0	0	1	0	0	0	13085	1357	47	4	3619	4	RASGRF1	15	79356835	Missense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10	4985861	79356835	23174557	35	8466											
ABCC6	368	hgsc.bcm.edu	37	16	16282704	16282704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	G	16282704	A	G	16282704	3	3	137	1	0	0	0	0	1	0	0	0	57	333	12	3	2824	3	ABCC6	16	16282704	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10		16282704	74072049	36	8467											
COG7	91949	hgsc.bcm.edu;ucsc.edu	37	16	23409386	23409386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	23409386	G	T	23409386	3	4	137	1	0	0	0	0	1	0	0	0	3665	1000	35	4	460	4	COG7	16	23409386	Missense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10	7126682	23409386	66945367	37	8468											
PALB2	79728	hgsc.bcm.edu;ucsc.edu	37	16	23634440	23634440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	G	23634440	C	G	23634440	3	3	137	1	0	0	0	0	1	0	0	0	11413	478	17	4	734	4	PALB2	16	23634440	Missense_Mutation	SNP	C	TCGA-B0-4847-01A-01D-1361-10	225054	23634440	66720313	38	8469											
MBTD1	54799	hgsc.bcm.edu;ucsc.edu	37	17	49281222	49281222	+	Silent	SNP	A	A	G	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	G	49281222	A	G	49281222	2	3	137	1	0	0	0	0	0	0	0	1	9367	446	16	3		3	MBTD1	17	49281222	Silent	SNP	A	TCGA-B0-4847-01A-01D-1361-10		49281222	31913988	39	8470											
BZRAP1	9256	hgsc.bcm.edu	37	17	56386671	56386672	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	G	56386672	-	G	56386671	7	5	137	1	0	1	1	0	0	0	0	0	1579	304	11	0	1651	0	BZRAP1	17	56386671	Frame_Shift_Ins	INS	-	TCGA-B0-4847-01A-01D-1361-10	7105449	56386671	24808539	40	8471											
EIF3G	8666	hgsc.bcm.edu;ucsc.edu	37	19	10229837	10229837	+	Silent	SNP	G	G	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	10229837	G	T	10229837	2	4	137	1	0	0	0	0	0	0	0	1	5019	1277	45	4		4	EIF3G	19	10229837	Silent	SNP	G	TCGA-B0-4847-01A-01D-1361-10		10229837	48899146	41	8472											
CNOT3	4849	hgsc.bcm.edu	37	19	54649542	54649542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	54649542	T	A	54649542	3	1	137	1	0	0	0	0	1	0	0	0	3622	1551	54	5	718	5	CNOT3	19	54649542	Missense_Mutation	SNP	T	TCGA-B0-4847-01A-01D-1361-10	44419705	54649542	4479441	42	8473											
PANK2	80025	hgsc.bcm.edu;ucsc.edu	37	20	3891254	3891254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	A	3891254	G	A	3891254	3	1	137	1	0	0	0	0	1	0	0	0	11424	1291	45	2	1022	2	PANK2	20	3891254	Missense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10		3891254	59134266	43	8474											
MYH7B	57644	hgsc.bcm.edu	37	20	33587603	33587603	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	33587603	G	T	33587603	4	4	137	1	0	0	0	0	0	1	0	0	10047	1175	41	4	4943	4	MYH7B	20	33587603	Nonsense_Mutation	SNP	G	TCGA-B0-4847-01A-01D-1361-10	29696349	33587603	29437917	44	8475											
ADAMTS1	9510	hgsc.bcm.edu;ucsc.edu	37	21	28214876	28214876	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	T	28214876	A	T	28214876	3	4	137	1	0	0	0	0	1	0	0	0	255	246	9	5	2076	5	ADAMTS1	21	28214876	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10		28214876	19915019	45	8476											
BCOR	54880	hgsc.bcm.edu	37	X	39911578	39911578	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4847-01A-01D-1361-10	TCGA-B0-4847-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfeaf113-e264-4df2-8e4f-cde34b625cad	a43f6665-39f0-460f-8b5d-2672f6adc253	C	39911578	A	C	39911578	3	2	137	1	0	0	0	0	1	0	0	0	1386	243	9	5	219	5	BCOR	23	39911578	Missense_Mutation	SNP	A	TCGA-B0-4847-01A-01D-1361-10		39911578	115358982	46	8477											
FAM54B	0	hgsc.bcm.edu	37	1	26156098	26156098	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	26156098	T	A	26156098	3	1	138	1	0	0	0	0	1	0	0	0	5590	1609	56	5	568	5	FAM54B	1	26156098	Missense_Mutation	SNP	T	TCGA-B0-4848-01A-01D-1361-10		26156098	223094523	1	8478											
OLFML2B	25903	hgsc.bcm.edu	37	1	161954034	161954034	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	G	161954034	T	G	161954034	3	3	138	1	0	0	0	0	1	0	0	0	10865	1580	55	5	572	5	OLFML2B	1	161954034	Missense_Mutation	SNP	T	TCGA-B0-4848-01A-01D-1361-10	135797936	161954034	87296587	2	8479											
C1orf74	148304	hgsc.bcm.edu;ucsc.edu	37	1	209956952	209956953	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	-	209956953	GT	-	209956952	7	5	138	1	0	1	0	1	0	0	0	0	2060	1261	44	0	785	0	C1orf74	1	209956952	Frame_Shift_Del	DEL	GT	TCGA-B0-4848-01A-01D-1361-10	48002918	209956952	39293669	3	8480											
BIN1	274	hgsc.bcm.edu;ucsc.edu	37	2	127816686	127816686	+	Missense_Mutation	SNP	A	A	C	rs141588262	alternate_allele	TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	C	127816686	A	C	127816686	3	2	138	1	0	0	0	0	1	0	0	0	1432	214	8	5	914	5	BIN1	2	127816686	Missense_Mutation	SNP	A	TCGA-B0-4848-01A-01D-1361-10		127816686	115382687	4	8481											
ANK2	287	hgsc.bcm.edu	37	4	114179539	114179539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	G	114179539	A	G	114179539	3	3	138	1	0	0	0	0	1	0	0	0	621	43	2	3	1433	3	ANK2	4	114179539	Missense_Mutation	SNP	A	TCGA-B0-4848-01A-01D-1361-10		114179539	76974737	5	8482											
GLRB	2743	hgsc.bcm.edu;ucsc.edu	37	4	158043499	158043499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	158043499	G	A	158043499	3	1	138	1	0	0	0	0	1	0	0	0	6465	1029	36	2	257	2	GLRB	4	158043499	Missense_Mutation	SNP	G	TCGA-B0-4848-01A-01D-1361-10	43863960	158043499	33110777	6	8483											
CUL9	23113	hgsc.bcm.edu;ucsc.edu	37	6	43166412	43166414	+	In_Frame_Del	DEL	GGG	GGG	-	rs141674093	bycluster;by1000genomes	TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	GGG	GGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	-	43166414	GGG	-	43166412	7	5	138	1	0	1	0	1	0	0	0	0	4063	1348	47	0	2911	0	CUL9	6	43166412	In_Frame_Del	DEL	GGG	TCGA-B0-4848-01A-01D-1361-10		43166412	127948655	7	8484											
DST	667	ucsc.edu	37	6	56394436	56394436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	T	T	T	C	T	T	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	C	56394436	T	C	56394436	3	2	138	1	0	0	0	0	1	0	0	0	4785	1638	57	3	6131	3	DST	6	56394436	Missense_Mutation	SNP	T	TCGA-B0-4848-01A-01D-1361-10	13228024	56394436	114720631	8	8485											
RBM16	0	hgsc.bcm.edu	37	6	155124697	155124697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	G	155124697	A	G	155124697	3	3	138	1	0	0	0	0	1	0	0	0	13131	333	12	3	833	3	RBM16	6	155124697	Missense_Mutation	SNP	A	TCGA-B0-4848-01A-01D-1361-10	98730261	155124697	15990370	9	8486											
C7orf46	0	hgsc.bcm.edu;ucsc.edu	37	7	23737852	23737852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	23737852	G	A	23737852	3	1	138	1	0	0	0	0	1	0	0	0	2398	1029	36	2	697	2	C7orf46	7	23737852	Missense_Mutation	SNP	G	TCGA-B0-4848-01A-01D-1361-10		23737852	135400811	10	8487											
STAG3	10734	hgsc.bcm.edu	37	7	99796170	99796170	+	Silent	SNP	C	C	T	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	T	99796170	C	T	99796170	2	4	138	1	0	0	0	0	0	0	0	1	15256	726	26	2		2	STAG3	7	99796170	Silent	SNP	C	TCGA-B0-4848-01A-01D-1361-10	76058318	99796170	59342493	11	8488											
CFTR	1080	hgsc.bcm.edu	37	7	117188815	117188818	+	Frame_Shift_Del	DEL	ATTA	ATTA	-	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	ATTA	ATTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	-	117188818	ATTA	-	117188815	7	5	138	1	0	1	0	1	0	0	0	0	3296	449	16	0	1368	0	CFTR	7	117188815	Frame_Shift_Del	DEL	ATTA	TCGA-B0-4848-01A-01D-1361-10	17392645	117188815	41949848	12	8489											
FLJ43860	0	hgsc.bcm.edu	37	8	142488777	142488777	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	T	142488777	A	T	142488777	3	4	138	1	0	0	0	0	1	0	0	0	5937	304	11	5	2856	5	FLJ43860	8	142488777	Missense_Mutation	SNP	A	TCGA-B0-4848-01A-01D-1361-10		142488777	3875245	13	8490											
GTF3C5	9328	hgsc.bcm.edu;ucsc.edu	37	9	135932247	135932247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	135932247	G	A	135932247	3	1	138	1	0	0	0	0	1	0	0	0	6883	1174	41	2	1408	2	GTF3C5	9	135932247	Missense_Mutation	SNP	G	TCGA-B0-4848-01A-01D-1361-10		135932247	5281184	14	8491											
INPP5E	56623	hgsc.bcm.edu	37	9	139324835	139324835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	139324835	C	A	139324835	3	1	138	1	0	0	0	0	1	0	0	0	7764	623	22	4	246	4	INPP5E	9	139324835	Missense_Mutation	SNP	C	TCGA-B0-4848-01A-01D-1361-10	3392588	139324835	1888596	15	8492											
OR52E8	390079	hgsc.bcm.edu;ucsc.edu	37	11	5878042	5878042	+	Silent	SNP	A	A	G	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	G	5878042	A	G	5878042	2	3	138	1	0	0	0	0	0	0	0	1	11125	224	8	3		3	OR52E8	11	5878042	Silent	SNP	A	TCGA-B0-4848-01A-01D-1361-10		5878042	129128474	16	8493											
DNHD1	144132	hgsc.bcm.edu	37	11	6592218	6592218	+	Silent	SNP	G	G	T	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	T	6592218	G	T	6592218	2	4	138	1	0	0	0	0	0	0	0	1	4670	1277	45	4		4	DNHD1	11	6592218	Silent	SNP	G	TCGA-B0-4848-01A-01D-1361-10	714176	6592218	128414298	17	8494											
SOX6	55553	hgsc.bcm.edu	37	11	16077420	16077420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	16077420	T	A	16077420	3	1	138	1	0	0	0	0	1	0	0	0	14968	1464	51	5	1427	5	SOX6	11	16077420	Missense_Mutation	SNP	T	TCGA-B0-4848-01A-01D-1361-10	9485202	16077420	118929096	18	8495											
C11orf41	0	hgsc.bcm.edu;ucsc.edu	37	11	33566672	33566672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	33566672	C	A	33566672	3	1	138	1	0	0	0	0	1	0	0	0	1642	507	18	4	2266	4	C11orf41	11	33566672	Missense_Mutation	SNP	C	TCGA-B0-4848-01A-01D-1361-10	17489252	33566672	101439844	19	8496											
MS4A3	932	hgsc.bcm.edu;ucsc.edu	37	11	59834545	59834545	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	T	59834545	A	T	59834545	3	4	138	1	0	0	0	0	1	0	0	0	9868	304	11	5	487	5	MS4A3	11	59834545	Missense_Mutation	SNP	A	TCGA-B0-4848-01A-01D-1361-10	26267873	59834545	75171971	20	8497											
ARHGEF17	9828	hgsc.bcm.edu;ucsc.edu	37	11	73022114	73022114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	T	73022114	G	T	73022114	3	4	138	1	0	0	0	0	1	0	0	0	900	1232	43	4	2433	4	ARHGEF17	11	73022114	Missense_Mutation	SNP	G	TCGA-B0-4848-01A-01D-1361-10	13187569	73022114	61984402	21	8498											
PKNOX2	63876	hgsc.bcm.edu	37	11	125300008	125300008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	G	125300008	A	G	125300008	3	3	138	1	0	0	0	0	1	0	0	0	11990	188	7	3	1197	3	PKNOX2	11	125300008	Missense_Mutation	SNP	A	TCGA-B0-4848-01A-01D-1361-10	52277894	125300008	9706508	22	8499											
TMTC1	83857	hgsc.bcm.edu;ucsc.edu	37	12	29786235	29786235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	29786235	C	A	29786235	3	1	138	1	0	0	0	0	1	0	0	0	16272	478	17	4	1727	4	TMTC1	12	29786235	Missense_Mutation	SNP	C	TCGA-B0-4848-01A-01D-1361-10		29786235	104065660	23	8500											
DNAH10	196385	hgsc.bcm.edu;ucsc.edu	37	12	124352543	124352543	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	124352543	T	A	124352543	3	1	138	1	0	0	0	0	1	0	0	0	4600	1580	55	5	7208	5	DNAH10	12	124352543	Missense_Mutation	SNP	T	TCGA-B0-4848-01A-01D-1361-10	94566308	124352543	9499352	24	8501											
GOLGA3	2802	hgsc.bcm.edu;ucsc.edu	37	12	133351772	133351772	+	Silent	SNP	C	C	T	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	T	133351772	C	T	133351772	2	4	138	1	0	0	0	0	0	0	0	1	6561	912	32	2		2	GOLGA3	12	133351772	Silent	SNP	C	TCGA-B0-4848-01A-01D-1361-10	8999229	133351772	500123	25	8502											
LMO7	4008	hgsc.bcm.edu	37	13	76195901	76195901	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	-	76195901	A	-	76195901	7	5	138	1	0	1	0	1	0	0	0	0	8862	243	9	0	74	0	LMO7	13	76195901	Frame_Shift_Del	DEL	A	TCGA-B0-4848-01A-01D-1361-10		76195901	38973977	26	8503											
FANCM	57697	hgsc.bcm.edu	37	14	45606357	45606357	+	Silent	SNP	T	T	C	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	C	45606357	T	C	45606357	2	2	138	1	0	0	0	0	0	0	0	1	5678	1828	64	3		3	FANCM	14	45606357	Silent	SNP	T	TCGA-B0-4848-01A-01D-1361-10		45606357	61743183	27	8504											
AKT1	207	hgsc.bcm.edu;ucsc.edu	37	14	105246445	105246445	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	C	105246445	A	C	105246445	3	2	138	1	0	0	0	0	1	0	0	0	478	304	11	5	1335	5	AKT1	14	105246445	Missense_Mutation	SNP	A	TCGA-B0-4848-01A-01D-1361-10	59640088	105246445	2103095	28	8505											
TTBK2	146057	hgsc.bcm.edu	37	15	43067428	43067428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	43067428	C	A	43067428	3	1	138	1	0	0	0	0	1	0	0	0	16689	913	32	4	1843	4	TTBK2	15	43067428	Missense_Mutation	SNP	C	TCGA-B0-4848-01A-01D-1361-10		43067428	59463964	29	8506											
MYO5A	4644	hgsc.bcm.edu;ucsc.edu	37	15	52720682	52720682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	C	52720682	T	C	52720682	3	2	138	1	0	0	0	0	1	0	0	0	10085	1696	59	3	5500	3	MYO5A	15	52720682	Missense_Mutation	SNP	T	TCGA-B0-4848-01A-01D-1361-10	9653254	52720682	49810710	30	8507											
COX6A2	1339	hgsc.bcm.edu;ucsc.edu	37	16	31439138	31439138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	31439138	T	A	31439138	3	1	138	1	0	0	0	0	1	0	0	0	3777	1493	52	5	46	5	COX6A2	16	31439138	Missense_Mutation	SNP	T	TCGA-B0-4848-01A-01D-1361-10		31439138	58915615	31	8508											
MYH3	4621	hgsc.bcm.edu;ucsc.edu	37	17	10541580	10541580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	10541580	G	A	10541580	3	1	138	1	0	0	0	0	1	0	0	0	10043	1087	38	1	2373	1	MYH3	17	10541580	Missense_Mutation	SNP	G	TCGA-B0-4848-01A-01D-1361-10		10541580	70653630	32	8509											
ZNF507	22847	hgsc.bcm.edu	37	19	32844300	32844300	+	Silent	SNP	C	C	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	32844300	C	A	32844300	2	1	138	1	0	0	0	0	0	0	0	1	17965	581	21	4		4	ZNF507	19	32844300	Silent	SNP	C	TCGA-B0-4848-01A-01D-1361-10		32844300	26284683	33	8510											
SUPT5H	6829	hgsc.bcm.edu	37	19	39959403	39959403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	T	39959403	G	T	39959403	3	4	138	1	0	0	0	0	1	0	0	0	15411	1232	43	4	1095	4	SUPT5H	19	39959403	Missense_Mutation	SNP	G	TCGA-B0-4848-01A-01D-1361-10	7115103	39959403	19169580	34	8511											
DHDH	27294	hgsc.bcm.edu	37	19	49447699	49447699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	49447699	G	A	49447699	3	1	138	1	0	0	0	0	1	0	0	0	4481	1319	46	2	852	2	DHDH	19	49447699	Missense_Mutation	SNP	G	TCGA-B0-4848-01A-01D-1361-10	9488296	49447699	9681284	35	8512											
KLK2	3817	hgsc.bcm.edu	37	19	51378100	51378100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	51378100	C	A	51378100	3	1	138	1	0	0	0	0	1	0	0	0	8411	623	22	4	176	4	KLK2	19	51378100	Missense_Mutation	SNP	C	TCGA-B0-4848-01A-01D-1361-10	1930401	51378100	7750883	36	8513											
SPAG4	6676	hgsc.bcm.edu;ucsc.edu	37	20	34206020	34206020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	C	34206020	G	C	34206020	3	2	138	1	0	0	0	0	1	0	0	0	14993	1232	43	4	568	4	SPAG4	20	34206020	Missense_Mutation	SNP	G	TCGA-B0-4848-01A-01D-1361-10		34206020	28819500	37	8514											
FITM2	128486	hgsc.bcm.edu;ucsc.edu	37	20	42935674	42935674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	T	42935674	A	T	42935674	3	4	138	1	0	0	0	0	1	0	0	0	5906	188	7	5	412	5	FITM2	20	42935674	Missense_Mutation	SNP	A	TCGA-B0-4848-01A-01D-1361-10	8729654	42935674	20089846	38	8515											
GRIK1	2897	hgsc.bcm.edu	37	21	31311718	31311718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	A	31311718	G	A	31311718	3	1	138	1	0	0	0	0	1	0	0	0	6780	1116	39	1	2883	1	GRIK1	21	31311718	Missense_Mutation	SNP	G	TCGA-B0-4848-01A-01D-1361-10		31311718	16818177	39	8516											
FAM47A	158724	hgsc.bcm.edu	37	X	34148257	34148257	+	Silent	SNP	A	A	T	novel		TCGA-B0-4848-01A-01D-1361-10	TCGA-B0-4848-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d00e9734-6526-46dc-87a0-db7e9a96dd53	226e2ba9-e35c-4837-8df0-77bfdf4caf40	T	34148257	A	T	34148257	2	4	138	1	0	0	0	0	0	0	0	1	5576	59	3	5		5	FAM47A	23	34148257	Silent	SNP	A	TCGA-B0-4848-01A-01D-1361-10		34148257	121122303	40	8517											
MLL2	8085	hgsc.bcm.edu	37	12	49448367	49448367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4848-01A-01W-1359-10	TCGA-B0-4848-11A-01W-1359-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	e1f8ad3f-9bbd-48b1-83bf-13972f408470	d898b6cb-2bd5-4507-ba0a-673510b19be3	T	49448367	A	T	49448367	3	4	139	1	0	0	0	0	1	0	0	0	9628	420	15	5	16477	5	MLL2	12	49448367	Missense_Mutation	SNP	A	TCGA-B0-4848-01A-01W-1359-10		49448367	84403528	1	8518											
WDR47	22911	hgsc.bcm.edu	37	1	109553950	109553950	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	109553950	A	T	109553950	3	4	140	1	0	0	0	0	1	0	0	0	17312	11	1	5	2088	5	WDR47	1	109553950	Missense_Mutation	SNP	A	TCGA-B0-4849-01A-01D-1361-10		109553950	139696671	1	8519											
GBA	2629	hgsc.bcm.edu	37	1	155209553	155209553	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	G	155209553	C	G	155209553	3	3	140	1	0	0	0	0	1	0	0	0	6273	753	26	4	1334	4	GBA	1	155209553	Missense_Mutation	SNP	C	TCGA-B0-4849-01A-01D-1361-10	45655603	155209553	94041068	2	8520											
F5	2153	hgsc.bcm.edu	37	1	169510437	169510437	+	Silent	SNP	T	T	C	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	C	169510437	T	C	169510437	2	2	140	1	0	0	0	0	0	0	0	1	5350	1722	60	3		3	F5	1	169510437	Silent	SNP	T	TCGA-B0-4849-01A-01D-1361-10	14300884	169510437	79740184	3	8521											
LAMB3	3914	hgsc.bcm.edu	37	1	209807972	209807972	+	Silent	SNP	G	G	A	rs1130667	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	A	209807972	G	A	209807972	2	1	140	1	0	0	0	0	0	0	0	1	8619	1103	39	1		1	LAMB3	1	209807972	Silent	SNP	G	TCGA-B0-4849-01A-01D-1361-10	40297535	209807972	39442649	4	8522											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52678735	52678735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	52678735	G	T	52678735	4	4	140	1	0	0	0	0	0	1	0	0	11498	1294	45	4	4108	4	PBRM1	3	52678735	Nonsense_Mutation	SNP	G	TCGA-B0-4849-01A-01D-1361-10		52678735	145343695	5	8523											
SLC4A4	8671	hgsc.bcm.edu;ucsc.edu	37	4	72338634	72338634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	C	72338634	T	C	72338634	3	2	140	1	0	0	0	0	1	0	0	0	14669	1783	62	3	2021	3	SLC4A4	4	72338634	Missense_Mutation	SNP	T	TCGA-B0-4849-01A-01D-1361-10		72338634	118815642	6	8524											
FAT4	79633	hgsc.bcm.edu;ucsc.edu	37	4	126373477	126373477	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	C	126373477	A	C	126373477	3	2	140	1	0	0	0	0	1	0	0	0	5699	101	4	5	11340	5	FAT4	4	126373477	Missense_Mutation	SNP	A	TCGA-B0-4849-01A-01D-1361-10	54034843	126373477	64780799	7	8525											
ASCC3	10973	hgsc.bcm.edu;ucsc.edu	37	6	101296058	101296058	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	C	101296058	G	C	101296058	3	2	140	1	0	0	0	0	1	0	0	0	1033	971	34	4	5997	4	ASCC3	6	101296058	Missense_Mutation	SNP	G	TCGA-B0-4849-01A-01D-1361-10		101296058	69819009	8	8526											
EGFR	1956	hgsc.bcm.edu	37	7	55259454	55259454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	A	55259454	C	A	55259454	3	1	140	1	0	0	0	0	1	0	0	0	4969	680	24	4	2858	4	EGFR	7	55259454	Missense_Mutation	SNP	C	TCGA-B0-4849-01A-01D-1361-10		55259454	103879209	9	8527											
ZNF800	168850	hgsc.bcm.edu;ucsc.edu	37	7	127017270	127017270	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	127017270	A	T	127017270	3	4	140	1	0	0	0	0	1	0	0	0	18181	420	15	5	1735	5	ZNF800	7	127017270	Missense_Mutation	SNP	A	TCGA-B0-4849-01A-01D-1361-10	71757816	127017270	32121393	10	8528											
CNTNAP2	26047	hgsc.bcm.edu;ucsc.edu	37	7	147092819	147092819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	147092819	G	T	147092819	3	4	140	1	0	0	0	0	1	0	0	0	3649	1165	41	4	1655	4	CNTNAP2	7	147092819	Missense_Mutation	SNP	G	TCGA-B0-4849-01A-01D-1361-10	20075549	147092819	12045844	11	8529											
ZNF706	51123	hgsc.bcm.edu;ucsc.edu	37	8	102213933	102213933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	C	102213933	T	C	102213933	3	2	140	1	0	0	0	0	1	0	0	0	18122	1792	62	3	201	3	ZNF706	8	102213933	Missense_Mutation	SNP	T	TCGA-B0-4849-01A-01D-1361-10		102213933	44150089	12	8530											
LRSAM1	90678	hgsc.bcm.edu;ucsc.edu	37	9	130241215	130241215	+	Silent	SNP	C	C	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	130241215	C	T	130241215	2	4	140	1	0	0	0	0	0	0	0	1	9050	477	17	2		2	LRSAM1	9	130241215	Silent	SNP	C	TCGA-B0-4849-01A-01D-1361-10		130241215	10972216	13	8531											
ZEB1	6935	hgsc.bcm.edu;ucsc.edu	37	10	31812969	31812969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	C	31812969	T	C	31812969	3	2	140	1	0	0	0	0	1	0	0	0	17635	1638	57	3	2754	3	ZEB1	10	31812969	Missense_Mutation	SNP	T	TCGA-B0-4849-01A-01D-1361-10		31812969	103721778	14	8532											
ZNF33A	7581	hgsc.bcm.edu;ucsc.edu	37	10	38343549	38343549	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	38343549	A	T	38343549	3	4	140	1	0	0	0	0	1	0	0	0	17866	72	3	5	511	5	ZNF33A	10	38343549	Missense_Mutation	SNP	A	TCGA-B0-4849-01A-01D-1361-10	6530580	38343549	97191198	15	8533											
C10orf118	55088	hgsc.bcm.edu;ucsc.edu	37	10	115891000	115891000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	G	115891000	C	G	115891000	3	3	140	1	0	0	0	0	1	0	0	0	1589	825	29	4	709	4	C10orf118	10	115891000	Missense_Mutation	SNP	C	TCGA-B0-4849-01A-01D-1361-10	77547451	115891000	19643747	16	8534			1	17		2	2	84	N	C_A	6.702673e-05
C10orf118	55088	hgsc.bcm.edu;ucsc.edu	37	10	115891083	115891083	+	Silent	SNP	A	A	G	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	G	115891083	A	G	115891083	2	3	140	1	0	0	0	0	0	0	0	1	1589	40	2	3		3	C10orf118	10	115891083	Silent	SNP	A	TCGA-B0-4849-01A-01D-1361-10	83	115891083	19643664	17	8535			1	17		2	2	84	N	C_A	6.702673e-05
EIF4G2	1982	hgsc.bcm.edu;ucsc.edu	37	11	10825559	10825559	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	A	10825559	C	A	10825559	4	1	140	1	0	0	0	0	0	1	0	0	5039	864	30	4	2194	4	EIF4G2	11	10825559	Nonsense_Mutation	SNP	C	TCGA-B0-4849-01A-01D-1361-10		10825559	124180957	18	8536											
TPH1	7166	hgsc.bcm.edu;ucsc.edu	37	11	18050851	18050851	+	Silent	SNP	G	G	A	rs150277860	bycluster;byfrequency;by1000genomes	TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	A	18050851	G	A	18050851	2	1	140	1	0	0	0	0	0	0	0	1	16413	1103	39	1		1	TPH1	11	18050851	Silent	SNP	G	TCGA-B0-4849-01A-01D-1361-10	7225292	18050851	116955665	19	8537											
CLEC12A	160364	hgsc.bcm.edu;ucsc.edu	37	12	10131627	10131627	+	Silent	SNP	C	C	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	10131627	C	T	10131627	2	4	140	1	0	0	0	0	0	0	0	1	3499	912	32	2		2	CLEC12A	12	10131627	Silent	SNP	C	TCGA-B0-4849-01A-01D-1361-10		10131627	123720268	20	8538											
KRT75	9119	hgsc.bcm.edu;ucsc.edu	37	12	52818423	52818423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	52818423	G	T	52818423	3	4	140	1	0	0	0	0	1	0	0	0	8495	991	35	4	125	4	KRT75	12	52818423	Missense_Mutation	SNP	G	TCGA-B0-4849-01A-01D-1361-10	42686796	52818423	81033472	21	8539											
TRPC4	7223	hgsc.bcm.edu;ucsc.edu	37	13	38266223	38266223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	A	38266223	C	A	38266223	3	1	140	1	0	0	0	0	1	0	0	0	16592	710	25	4	1833	4	TRPC4	13	38266223	Missense_Mutation	SNP	C	TCGA-B0-4849-01A-01D-1361-10		38266223	76903655	22	8540											
MYH13	8735	hgsc.bcm.edu	37	17	10219054	10219054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	A	10219054	G	A	10219054	4	1	140	1	0	0	0	0	0	1	0	0	10039	1357	47	2	1928	2	MYH13	17	10219054	Nonsense_Mutation	SNP	G	TCGA-B0-4849-01A-01D-1361-10		10219054	70976156	23	8541											
EMILIN2	84034	hgsc.bcm.edu	37	18	2890860	2890860	+	Silent	SNP	G	G	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	2890860	G	T	2890860	2	4	140	1	0	0	0	0	0	0	0	1	5096	1103	39	4		4	EMILIN2	18	2890860	Silent	SNP	G	TCGA-B0-4849-01A-01D-1361-10		2890860	75186388	24	8542											
VPS16	64601	hgsc.bcm.edu;ucsc.edu	37	20	2844667	2844667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4849-01A-01D-1361-10	TCGA-B0-4849-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb7a0380-5949-46c4-8f7a-c24f91eb31ff	e72cee0e-92b2-49b4-926d-1f2b0797672b	T	2844667	G	T	2844667	3	4	140	1	0	0	0	0	1	0	0	0	17205	1377	48	4	1611	4	VPS16	20	2844667	Missense_Mutation	SNP	G	TCGA-B0-4849-01A-01D-1361-10		2844667	60180853	25	8543											
MTOR	2475	broad.mit.edu;ucsc.edu	37	1	11187799	11187799	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	11187799	A	A	11187799	3	1	141	1	0	0	0	0	1	0	0	0	9961	1551	54	5	1611	5	MTOR	1	11187799	Missense_Mutation	SNP	T	TCGA-B0-4852-01A-01D-1501-10		11187799	238062822	1	8544											
BCL9	607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	147096204	147096204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	147096204	C	A	147096204	3	1	141	1	0	0	0	0	1	0	0	0	1381	913	32	4	3751	4	BCL9	1	147096204	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	135908405	147096204	102154417	2	8545											
CD1E	913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158324301	158324301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	158324301	C	A	158324301	3	1	141	1	0	0	0	0	1	0	0	0	2980	826	29	4	199	4	CD1E	1	158324301	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	11228097	158324301	90926320	3	8546											
PPP2R5A	5525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	212506854	212506854	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	212506854	T	A	212506854	3	1	141	1	0	0	0	0	1	0	0	0	12402	1609	56	5	404	5	PPP2R5A	1	212506854	Missense_Mutation	SNP	T	TCGA-B0-4852-01A-01D-1501-10	54182553	212506854	36743767	4	8547											
OTOF	9381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	26684967	26684967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	26684967	C	A	26684967	3	1	141	1	0	0	0	0	1	0	0	0	11310	826	29	4	923	4	OTOF	2	26684967	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10		26684967	216514406	5	8548											
KCNG3	170850	hgsc.bcm.edu;ucsc.edu	37	2	42671444	42671444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	42671444	A	G	42671444	3	3	141	1	0	0	0	0	1	0	0	0	8036	131	5	3	373	3	KCNG3	2	42671444	Missense_Mutation	SNP	A	TCGA-B0-4852-01A-01D-1501-10	15986477	42671444	200527929	6	8549											
AAK1	22848	broad.mit.edu;ucsc.edu	37	2	69704092	69704092	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	69704092	G	G	69704092	3	3	141	1	0	0	0	0	1	0	0	0	16	14	1	3	182	3	AAK1	2	69704092	Missense_Mutation	SNP	A	TCGA-B0-4852-01A-01D-1501-10	27032648	69704092	173495281	7	8550											
AUP1	550	broad.mit.edu;ucsc.edu	37	2	74754424	74754424	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	74754424	C	C	74754424	3	2	141	1	0	0	0	0	1	0	0	0	1220	1783	62	3	216	3	AUP1	2	74754424	Missense_Mutation	SNP	T	TCGA-B0-4852-01A-01D-1501-10	5050332	74754424	168444949	8	8551											
CD8A	925	hgsc.bcm.edu	37	2	87015623	87015623	+	RNA	SNP	G	G	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	87015623	G	A	87015623	1	1	141	0	1	0	0	0	0	0	0	0	3046	1276	44	2		2	CD8A	2	87015623	RNA	SNP	G	TCGA-B0-4852-01A-01D-1501-10	12261199	87015623	156183750	9	8552											
SCN7A	6332	broad.mit.edu;ucsc.edu	37	2	167289087	167289087	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	167289087	T	T	167289087	3	4	141	1	0	0	0	0	1	0	0	0	13936	217	8	5	2759	5	SCN7A	2	167289087	Missense_Mutation	SNP	A	TCGA-B0-4852-01A-01D-1501-10	80273464	167289087	75910286	10	8553											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179622487	179622487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	179622487	C	A	179622487	3	1	141	1	0	0	0	0	1	0	0	0	16747	681	24	4	100800	4	TTN	2	179622487	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	12333400	179622487	63576886	11	8554											
ZFAND2B	130617	broad.mit.edu;ucsc.edu	37	2	220072989	220072989	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	220072989	C	C	220072989	3	2	141	1	0	0	0	0	1	0	0	0	17640	1435	50	3	464	3	ZFAND2B	2	220072989	Missense_Mutation	SNP	T	TCGA-B0-4852-01A-01D-1501-10	40450502	220072989	23126384	12	8555											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10191469	10191469	+	Splice_Site	SNP	A	G	G	rs5030816		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	10191469	G	G	10191469	5	3	141	1	0	0	0	0	0	0	1	0	17174	202	7	3	472	3	VHL	3	10191469	Splice_Site	SNP	A	TCGA-B0-4852-01A-01D-1501-10		10191469	187830961	13	8556											
ULK4	54986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	41795894	41795895	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	41795895	-	A	41795894	7	5	141	1	0	1	1	0	0	0	0	0	16990	825	29	0	1611	0	ULK4	3	41795894	Frame_Shift_Ins	INS	-	TCGA-B0-4852-01A-01D-1501-10	31604425	41795894	156226536	14	8557											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47144873	47144873	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	47144873	A	C	47144873	3	2	141	1	0	0	0	0	1	0	0	0	14144	217	8	5	2874	5	SETD2	3	47144873	Missense_Mutation	SNP	A	TCGA-B0-4852-01A-01D-1501-10	5348979	47144873	150877557	15	8558											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52623124	52623124	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	-	52623124	T	-	52623124	7	5	141	1	0	1	0	1	0	0	0	0	11498	1464	51	0	2025	0	PBRM1	3	52623124	Frame_Shift_Del	DEL	T	TCGA-B0-4852-01A-01D-1501-10	5478251	52623124	145399306	16	8559											
HCLS1	3059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121366274	121366274	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	121366274	T	G	121366274	3	3	141	1	0	0	0	0	1	0	0	0	7002	1606	56	5	1324	5	HCLS1	3	121366274	Missense_Mutation	SNP	T	TCGA-B0-4852-01A-01D-1501-10	68743150	121366274	76656156	17	8560											
MED12L	116931	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	150874118	150874118	+	Splice_Site	SNP	G	G	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	150874118	G	T	150874118	5	4	141	1	0	0	0	0	0	0	1	0	9436	1275	44	4	745	4	MED12L	3	150874118	Splice_Site	SNP	G	TCGA-B0-4852-01A-01D-1501-10	29507844	150874118	47148312	18	8561											
ATP13A4	84239	broad.mit.edu;ucsc.edu	37	3	193158423	193158423	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	193158423	C	C	193158423	3	2	141	1	0	0	0	0	1	0	0	0	1126	98	4	5	1187	5	ATP13A4	3	193158423	Missense_Mutation	SNP	A	TCGA-B0-4852-01A-01D-1501-10	42284305	193158423	4864007	19	8562											
TEC	100124696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	48148400	48148400	+	Silent	SNP	A	A	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	48148400	A	T	48148400	2	4	141	1	0	0	0	0	0	0	0	1	15754	233	9	5		5	TEC	4	48148400	Silent	SNP	A	TCGA-B0-4852-01A-01D-1501-10		48148400	143005876	20	8563											
SEC24D	9871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	119718966	119718966	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	119718966	C	T	119718966	5	4	141	1	0	0	0	0	0	0	1	0	14010	695	24	2	2249	2	SEC24D	4	119718966	Splice_Site	SNP	C	TCGA-B0-4852-01A-01D-1501-10	71570566	119718966	71435310	21	8564											
GRIA2	2891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	158282180	158282180	+	Silent	SNP	A	A	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	158282180	A	C	158282180	2	2	141	1	0	0	0	0	0	0	0	1	6775	175	7	5		5	GRIA2	4	158282180	Silent	SNP	A	TCGA-B0-4852-01A-01D-1501-10	38563214	158282180	32872096	22	8565											
MARCH1	55016	broad.mit.edu;ucsc.edu	37	4	164450028	164450028	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	164450028	T	T	164450028	3	4	141	1	0	0	0	0	1	0	0	0	9305	1020	36	4	131	4	MARCH1	4	164450028	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	6167848	164450028	26704248	23	8566											
ADAMTS6	11174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	64483842	64483842	+	Splice_Site	SNP	C	C	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	64483842	C	G	64483842	5	3	141	1	0	0	0	0	0	0	1	0	270	521	18	4	458	4	ADAMTS6	5	64483842	Splice_Site	SNP	C	TCGA-B0-4852-01A-01D-1501-10		64483842	116431418	24	8567											
DNAH8	1769	hgsc.bcm.edu;ucsc.edu	37	6	38957910	38957910	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	-	38957910	C	-	38957910	7	5	141	1	0	1	0	1	0	0	0	0	4609	506	18	0	12859	0	DNAH8	6	38957910	Frame_Shift_Del	DEL	C	TCGA-B0-4852-01A-01D-1501-10		38957910	132157157	25	8568											
OPRM1	4988	broad.mit.edu;hgsc.bcm.edu	37	6	154412543	154412543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	154412543	G	T	154412543	3	4	141	1	0	0	0	0	1	0	0	0	10894	1058	37	4	1444	4	OPRM1	6	154412543	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	115454633	154412543	16702524	26	8569											
KLHL7	55975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23183605	23183605	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	23183605	C	G	23183605	3	3	141	1	0	0	0	0	1	0	0	0	8401	565	20	4	839	4	KLHL7	7	23183605	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10		23183605	135955058	27	8570											
WASL	8976	broad.mit.edu	37	7	123332892	123332892	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	123332892	A	A	123332892	3	1	141	1	0	0	0	0	1	0	0	0	17268	681	24	4	673	4	WASL	7	123332892	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	100149287	123332892	35805771	28	8571											
ADCK2	90956	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	140387007	140387007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	140387007	T	A	140387007	3	1	141	1	0	0	0	0	1	0	0	0	289	1783	62	5	1541	5	ADCK2	7	140387007	Missense_Mutation	SNP	T	TCGA-B0-4852-01A-01D-1501-10	17054115	140387007	18751656	29	8572											
CTSL1	1514	broad.mit.edu;hgsc.bcm.edu	37	9	90343025	90343026	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	-	90343026	AC	-	90343025	7	5	141	1	0	1	0	1	0	0	0	0	4040	40	2	0	216	0	CTSL1	9	90343025	Frame_Shift_Del	DEL	AC	TCGA-B0-4852-01A-01D-1501-10		90343025	50870406	30	8573											
CEP110	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123870184	123870184	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	123870184	A	T	123870184	4	4	141	1	0	0	0	0	0	1	0	0	3247	363	13	5	935	5	CEP110	9	123870184	Nonsense_Mutation	SNP	A	TCGA-B0-4852-01A-01D-1501-10	33527159	123870184	17343247	31	8574											
DIP2C	22982	broad.mit.edu;hgsc.bcm.edu	37	10	375486	375486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	375486	G	T	375486	3	4	141	1	0	0	0	0	1	0	0	0	4531	1232	43	4	1062	4	DIP2C	10	375486	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10		375486	135159261	32	8575											
C10orf47	0	broad.mit.edu;hgsc.bcm.edu	37	10	11894170	11894170	+	Silent	SNP	C	C	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	11894170	C	T	11894170	2	4	141	1	0	0	0	0	0	0	0	1	1607	680	24	2		2	C10orf47	10	11894170	Silent	SNP	C	TCGA-B0-4852-01A-01D-1501-10	11518684	11894170	123640577	33	8576											
CCAR1	55749	hgsc.bcm.edu;ucsc.edu	37	10	70520853	70520857	+	Frame_Shift_Del	DEL	TAAAG	TAAAG	-	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	TAAAG	TAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	-	70520857	TAAAG	-	70520853	7	5	141	1	0	1	0	1	0	0	0	0	2732	1741	61	0	2068	0	CCAR1	10	70520853	Frame_Shift_Del	DEL	TAAAG	TCGA-B0-4852-01A-01D-1501-10	58626683	70520853	65013894	34	8577											
ITPRIP	85450	hgsc.bcm.edu	37	10	106074435	106074435	+	Missense_Mutation	SNP	G	G	A	rs145628846	alternate_allele	TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	106074435	G	A	106074435	3	1	141	1	0	0	0	0	1	0	0	0	7930	1319	46	2	272	2	ITPRIP	10	106074435	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	35553582	106074435	29460312	35	8578											
NHLRC2	374354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	115664580	115664580	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	115664580	C	G	115664580	3	3	141	1	0	0	0	0	1	0	0	0	10413	623	22	4	1747	4	NHLRC2	10	115664580	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	9590145	115664580	19870167	36	8579											
BUB3	9184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	124917322	124917322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	124917322	A	G	124917322	3	3	141	1	0	0	0	0	1	0	0	0	1574	72	3	3	353	3	BUB3	10	124917322	Missense_Mutation	SNP	A	TCGA-B0-4852-01A-01D-1501-10	9252742	124917322	10617425	37	8580											
OR56A3	390083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5969272	5969272	+	Silent	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	5969272	C	A	5969272	2	1	141	1	0	0	0	0	0	0	0	1	11141	813	29	4		4	OR56A3	11	5969272	Silent	SNP	C	TCGA-B0-4852-01A-01D-1501-10		5969272	129037244	38	8581											
RRP8	23378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6621799	6621800	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	6621800	-	T	6621799	7	5	141	1	0	1	1	0	0	0	0	0	13703	565	20	0	210	0	RRP8	11	6621799	Frame_Shift_Ins	INS	-	TCGA-B0-4852-01A-01D-1501-10	652527	6621799	128384717	39	8582											
GRAMD1B	57476	hgsc.bcm.edu	37	11	123480598	123480599	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	123480599	-	C	123480598	7	5	141	1	0	1	1	0	0	0	0	0	6755	43	2	0	1370	0	GRAMD1B	11	123480598	Frame_Shift_Ins	INS	-	TCGA-B0-4852-01A-01D-1501-10	116858799	123480598	11525918	40	8583											
ADAMTS20	80070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	43769952	43769952	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	43769952	C	T	43769952	5	4	141	1	0	0	0	0	0	0	1	0	266	927	32	2	531	2	ADAMTS20	12	43769952	Splice_Site	SNP	C	TCGA-B0-4852-01A-01D-1501-10		43769952	90081943	41	8584											
AVIL	10677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	58202005	58202005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	58202005	A	G	58202005	3	3	141	1	0	0	0	0	1	0	0	0	1227	217	8	3	1333	3	AVIL	12	58202005	Missense_Mutation	SNP	A	TCGA-B0-4852-01A-01D-1501-10	14432053	58202005	75649890	42	8585											
TMCC3	57458	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	94975953	94975953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	94975953	C	A	94975953	3	1	141	1	0	0	0	0	1	0	0	0	16006	855	30	4	1005	4	TMCC3	12	94975953	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	36773948	94975953	38875942	43	8586											
NTN4	59277	hgsc.bcm.edu;ucsc.edu	37	12	96107078	96107078	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	-	96107078	G	-	96107078	7	5	141	1	0	1	0	1	0	0	0	0	10709	1306	46	0	1011	0	NTN4	12	96107078	Frame_Shift_Del	DEL	G	TCGA-B0-4852-01A-01D-1501-10	1131125	96107078	37744817	44	8587											
RBM19	9904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	114364985	114364985	+	Silent	SNP	T	T	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	114364985	T	C	114364985	2	2	141	1	0	0	0	0	0	0	0	1	13134	1567	55	3		3	RBM19	12	114364985	Silent	SNP	T	TCGA-B0-4852-01A-01D-1501-10	18257907	114364985	19486910	45	8588											
PCDH9	5101	broad.mit.edu;ucsc.edu	37	13	67801923	67801923	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	67801923	T	T	67801923	3	4	141	1	0	0	0	0	1	0	0	0	11525	1261	44	4	3079	4	PCDH9	13	67801923	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10		67801923	47367955	46	8589											
KCTD12	115207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	77459423	77459423	+	Silent	SNP	C	C	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	77459423	C	G	77459423	2	3	141	1	0	0	0	0	0	0	0	1	8106	639	23	4		4	KCTD12	13	77459423	Silent	SNP	C	TCGA-B0-4852-01A-01D-1501-10	9657500	77459423	37710455	47	8590											
SPTLC2	9517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	78045381	78045381	+	Silent	SNP	G	G	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	78045381	G	A	78045381	2	1	141	1	0	0	0	0	0	0	0	1	15136	1020	36	2		2	SPTLC2	14	78045381	Silent	SNP	G	TCGA-B0-4852-01A-01D-1501-10		78045381	29304159	48	8591											
VPS18	57617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41192166	41192166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	41192166	C	T	41192166	3	4	141	1	0	0	0	0	1	0	0	0	17206	759	27	1	1164	1	VPS18	15	41192166	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10		41192166	61339226	49	8592											
TYRO3	7301	hgsc.bcm.edu	37	15	41862436	41862436	+	Splice_Site	SNP	A	A	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	41862436	A	G	41862436	5	3	141	1	0	0	0	0	0	0	1	0	16826	434	15	3	1423	3	TYRO3	15	41862436	Splice_Site	SNP	A	TCGA-B0-4852-01A-01D-1501-10	670270	41862436	60668956	50	8593											
PLA2G4D	283748	broad.mit.edu;ucsc.edu	37	15	42386652	42386652	+	Silent	SNP	C	T	T	rs148416017		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	42386652	T	T	42386652	2	4	141	1	0	0	0	0	0	0	0	1	12011	912	32	2		2	PLA2G4D	15	42386652	Silent	SNP	C	TCGA-B0-4852-01A-01D-1501-10	524216	42386652	60144740	51	8594											
CDAN1	146059	broad.mit.edu;hgsc.bcm.edu	37	15	43021465	43021465	+	Silent	SNP	G	G	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	43021465	G	A	43021465	2	1	141	1	0	0	0	0	0	0	0	1	3056	991	35	2		2	CDAN1	15	43021465	Silent	SNP	G	TCGA-B0-4852-01A-01D-1501-10	634813	43021465	59509927	52	8595											
DMXL2	23312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51741365	51741365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	51741365	A	G	51741365	3	3	141	1	0	0	0	0	1	0	0	0	4597	420	15	3	187	3	DMXL2	15	51741365	Missense_Mutation	SNP	A	TCGA-B0-4852-01A-01D-1501-10	8719900	51741365	50790027	53	8596											
DMXL2	23312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51839582	51839582	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	51839582	C	G	51839582	3	3	141	1	0	0	0	0	1	0	0	0	4597	508	18	4	8670	4	DMXL2	15	51839582	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	98217	51839582	50691810	54	8597											
TMOD3	29766	broad.mit.edu	37	15	52213781	52213781	+	RNA	DEL	C	-	-	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	-	52213781	-	-	52213781	6	5	141	0	1	1	0	1	0	0	0	0	16247	870	30	0		0	TMOD3	15	52213781	RNA	DEL	C	TCGA-B0-4852-01A-01D-1501-10	374199	52213781	50317611	55	8598											
FLYWCH1	84256	hgsc.bcm.edu;ucsc.edu	37	16	2983285	2983286	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	-	2983286	CA	-	2983285	7	5	141	1	0	1	0	1	0	0	0	0	5954	816	29	0	958	0	FLYWCH1	16	2983285	Frame_Shift_Del	DEL	CA	TCGA-B0-4852-01A-01D-1501-10		2983285	87371468	56	8599											
OR3A2	4995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3181512	3181512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	3181512	C	A	3181512	3	1	141	1	0	0	0	0	1	0	0	0	11045	565	20	4	251	4	OR3A2	17	3181512	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10		3181512	78013698	57	8600											
ACACA	31	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	35640308	35640308	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	35640308	T	C	35640308	5	2	141	1	0	0	0	0	0	0	1	0	106	1594	55	3	6889	3	ACACA	17	35640308	Splice_Site	SNP	T	TCGA-B0-4852-01A-01D-1501-10	32458796	35640308	45554902	58	8601											
NAGS	162417	broad.mit.edu	37	17	42083124	42083124	+	Silent	SNP	T	C	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	42083124	C	C	42083124	2	2	141	1	0	0	0	0	0	0	0	1	10152	1538	54	3		3	NAGS	17	42083124	Silent	SNP	T	TCGA-B0-4852-01A-01D-1501-10	6442816	42083124	39112086	59	8602											
CLTC	1213	broad.mit.edu;ucsc.edu	37	17	57754361	57754361	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	57754361	C	C	57754361	3	2	141	1	0	0	0	0	1	0	0	0	3568	1580	55	3	2674	3	CLTC	17	57754361	Missense_Mutation	SNP	T	TCGA-B0-4852-01A-01D-1501-10	15671237	57754361	23440849	60	8603											
ACTG1	71	broad.mit.edu	37	17	79479120	79479120	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	79479120	T	T	79479120	3	4	141	1	0	0	0	0	1	0	0	0	196	739	26	2	971	2	ACTG1	17	79479120	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	21724759	79479120	1716090	61	8604											
SERPINB11	89778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	61390295	61390295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	61390295	G	C	61390295	3	2	141	1	0	0	0	0	1	0	0	0	14111	943	33	4	867	4	SERPINB11	18	61390295	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10		61390295	16686953	62	8605											
EMR3	84658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14736333	14736333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	C	14736333	T	C	14736333	3	2	141	1	0	0	0	0	1	0	0	0	5108	1821	63	3	75	3	EMR3	19	14736333	Missense_Mutation	SNP	T	TCGA-B0-4852-01A-01D-1501-10		14736333	44392650	63	8606											
ZNF570	148268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37975687	37975687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	37975687	G	T	37975687	3	4	141	1	0	0	0	0	1	0	0	0	18014	1377	48	4	1177	4	ZNF570	19	37975687	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	23239354	37975687	21153296	64	8607											
ERF	2077	broad.mit.edu;hgsc.bcm.edu	37	19	42753474	42753474	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	-	42753474	G	-	42753474	7	5	141	1	0	1	0	1	0	0	0	0	5223	971	34	0	860	0	ERF	19	42753474	Frame_Shift_Del	DEL	G	TCGA-B0-4852-01A-01D-1501-10	4777787	42753474	16375509	65	8608											
C19orf75	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51767348	51767348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	51767348	G	T	51767348	3	4	141	1	0	0	0	0	1	0	0	0	1951	1246	43	4	24	4	C19orf75	19	51767348	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	9013874	51767348	7361635	66	8609											
LILRA2	11027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55085805	55085805	+	Silent	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	55085805	C	A	55085805	2	1	141	1	0	0	0	0	0	0	0	1	8792	784	28	4		4	LILRA2	19	55085805	Silent	SNP	C	TCGA-B0-4852-01A-01D-1501-10	3318457	55085805	4043178	67	8610											
SLC13A3	64849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	45192089	45192089	+	Silent	SNP	G	G	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	45192089	G	A	45192089	2	1	141	1	0	0	0	0	0	0	0	1	14406	1048	37	1		1	SLC13A3	20	45192089	Silent	SNP	G	TCGA-B0-4852-01A-01D-1501-10		45192089	17833431	68	8611											
ZBTB46	140685	broad.mit.edu;hgsc.bcm.edu	37	20	62407316	62407316	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	62407316	C	T	62407316	5	4	141	1	0	0	0	0	0	0	1	0	17559	927	32	2	844	2	ZBTB46	20	62407316	Splice_Site	SNP	C	TCGA-B0-4852-01A-01D-1501-10	17215227	62407316	618204	69	8612											
BRWD1	54014	broad.mit.edu;ucsc.edu	37	21	40572254	40572254	+	Silent	SNP	A	G	G	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	G	40572254	G	G	40572254	2	3	141	1	0	0	0	0	0	0	0	1	1527	175	7	3		3	BRWD1	21	40572254	Silent	SNP	A	TCGA-B0-4852-01A-01D-1501-10		40572254	7557641	70	8613											
USP18	11274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	18643020	18643020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	18643020	C	A	18643020	3	1	141	1	0	0	0	0	1	0	0	0	17061	507	18	4	245	4	USP18	22	18643020	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10		18643020	32661546	71	8614											
FBLN1	2192	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45928965	45928965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	45928965	G	T	45928965	3	4	141	1	0	0	0	0	1	0	0	0	5705	1020	36	4	589	4	FBLN1	22	45928965	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	27285945	45928965	5375601	72	8615											
GLRA2	2742	broad.mit.edu;ucsc.edu	37	X	14748581	14748581	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	14748581	T	T	14748581	3	4	141	1	0	0	0	0	1	0	0	0	6462	875	31	1	1439	1	GLRA2	23	14748581	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10		14748581	140521979	73	8616											
KLHL15	80311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	24007140	24007140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	24007140	G	T	24007140	3	4	141	1	0	0	0	0	1	0	0	0	8378	1377	48	4	1105	4	KLHL15	23	24007140	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	9258559	24007140	131263420	74	8617											
UBA1	7317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	47062342	47062342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	47062342	G	A	47062342	3	1	141	1	0	0	0	0	1	0	0	0	16839	1217	42	2	1276	2	UBA1	23	47062342	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	23055202	47062342	108208218	75	8618											
PCDH11X	27328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	91137907	91137907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	91137907	C	A	91137907	3	1	141	1	0	0	0	0	1	0	0	0	11515	579	20	4	3078	4	PCDH11X	23	91137907	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	44075565	91137907	64132653	76	8619											
COL4A5	1287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107929324	107929324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	107929324	G	T	107929324	3	4	141	1	0	0	0	0	1	0	0	0	3696	1232	43	4	4455	4	COL4A5	23	107929324	Missense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	16791417	107929324	47341236	77	8620											
OCRL	4952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	128720994	128720994	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	T	128720994	C	T	128720994	4	4	141	1	0	0	0	0	0	1	0	0	10830	711	25	2	2233	2	OCRL	23	128720994	Nonsense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	20791670	128720994	26549566	78	8621											
PRRG3	79057	broad.mit.edu;hgsc.bcm.edu	37	X	150869198	150869198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	150869198	C	A	150869198	3	1	141	1	0	0	0	0	1	0	0	0	12617	623	22	4	399	4	PRRG3	23	150869198	Missense_Mutation	SNP	C	TCGA-B0-4852-01A-01D-1501-10	22148204	150869198	4401362	79	8622											
F8	2157	broad.mit.edu;ucsc.edu	37	X	154129670	154129670	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-B0-4852-01A-01D-1501-10	TCGA-B0-4852-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28dbeb57-c919-4f91-aa3c-7b8f3809011e	b19198c1-7ef5-4673-bb17-fbdce6183d7f	A	154129670	A	A	154129670	4	1	141	1	0	0	0	0	0	1	0	0	5352	1299	45	2	948	2	F8	23	154129670	Nonsense_Mutation	SNP	G	TCGA-B0-4852-01A-01D-1501-10	3260472	154129670	1140890	80	8623											
ARHGAP29	9411	broad.mit.edu	37	1	94649835	94649835	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	94649835	A	A	94649835	3	1	142	1	0	0	0	0	1	0	0	0	878	1058	37	1	1686	1	ARHGAP29	1	94649835	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08		94649835	154600786	1	8624											
INSRR	3645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156821582	156821582	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	C	156821582	T	C	156821582	5	2	142	1	0	0	0	0	0	0	1	0	7781	1536	53	3	3028	3	INSRR	1	156821582	Splice_Site	SNP	T	TCGA-B0-4945-01A-01D-1421-08	62171747	156821582	92429039	2	8625											
FCRL5	83416	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	157491077	157491077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	157491077	C	A	157491077	3	1	142	1	0	0	0	0	1	0	0	0	5805	507	18	4	716	4	FCRL5	1	157491077	Missense_Mutation	SNP	C	TCGA-B0-4945-01A-01D-1421-08	669495	157491077	91759544	3	8626											
ITPKB	3707	broad.mit.edu	37	1	226836374	226836374	+	Silent	SNP	T	C	C	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	C	226836374	C	C	226836374	2	2	142	1	0	0	0	0	0	0	0	1	7925	1594	55	3		3	ITPKB	1	226836374	Silent	SNP	T	TCGA-B0-4945-01A-01D-1421-08	69345297	226836374	22414247	4	8627											
GALNT5	11227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	158167827	158167827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	158167827	A	T	158167827	3	4	142	1	0	0	0	0	1	0	0	0	6223	11	1	5	2828	5	GALNT5	2	158167827	Missense_Mutation	SNP	A	TCGA-B0-4945-01A-01D-1421-08		158167827	85031546	5	8628											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191513	10191513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	C	10191513	T	C	10191513	3	2	142	1	0	0	0	0	1	0	0	0	17174	1522	53	3	516	3	VHL	3	10191513	Missense_Mutation	SNP	T	TCGA-B0-4945-01A-01D-1421-08		10191513	187830917	6	8629											
GRM2	2912	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	51749885	51749885	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	51749885	T	A	51749885	3	1	142	1	0	0	0	0	1	0	0	0	6804	1696	59	5	2106	5	GRM2	3	51749885	Missense_Mutation	SNP	T	TCGA-B0-4945-01A-01D-1421-08	41558372	51749885	146272545	7	8630											
SLC9A9	285195	broad.mit.edu	37	3	143567237	143567237	+	Translation_Start_Site	SNP	G	T	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	143567237	T	T	143567237	1	4	142	1	0	0	0	0	0	0	0	0	14734	1044	36	4		4	SLC9A9	3	143567237	Translation_Start_Site	SNP	G	TCGA-B0-4945-01A-01D-1421-08	91817352	143567237	54455193	8	8631											
OTOP1	133060	broad.mit.edu;hgsc.bcm.edu	37	4	4199146	4199146	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	C	4199146	A	C	4199146	3	2	142	1	0	0	0	0	1	0	0	0	11312	217	8	5	431	5	OTOP1	4	4199146	Missense_Mutation	SNP	A	TCGA-B0-4945-01A-01D-1421-08		4199146	186955130	9	8632											
LAP3	51056	broad.mit.edu	37	4	17579162	17579162	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	17579162	T	T	17579162	3	4	142	1	0	0	0	0	1	0	0	0	8630	1116	39	4	76	4	LAP3	4	17579162	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08	13380016	17579162	173575114	10	8633											
SCFD2	152579	hgsc.bcm.edu;ucsc.edu	37	4	53752026	53752026	+	Missense_Mutation	SNP	C	C	A	rs141706393	alternate_allele	TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	53752026	C	A	53752026	3	1	142	1	0	0	0	0	1	0	0	0	13903	652	23	4	212	4	SCFD2	4	53752026	Missense_Mutation	SNP	C	TCGA-B0-4945-01A-01D-1421-08	36172864	53752026	137402250	11	8634											
ADAMTS3	9508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	73175164	73175164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	73175164	G	T	73175164	3	4	142	1	0	0	0	0	1	0	0	0	267	1174	41	4	1520	4	ADAMTS3	4	73175164	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08	19423138	73175164	117979112	12	8635											
SEC31A	22872	hgsc.bcm.edu;ucsc.edu	37	4	83800058	83800058	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	-	83800058	G	-	83800058	7	5	142	1	0	1	0	1	0	0	0	0	14011	1000	35	0	3531	0	SEC31A	4	83800058	Frame_Shift_Del	DEL	G	TCGA-B0-4945-01A-01D-1421-08	10624894	83800058	107354218	13	8636											
CDKN2AIP	55602	hgsc.bcm.edu;ucsc.edu	37	4	184368249	184368249	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	-	184368249	T	-	184368249	7	5	142	1	0	1	0	1	0	0	0	0	3164	1493	52	0	1422	0	CDKN2AIP	4	184368249	Frame_Shift_Del	DEL	T	TCGA-B0-4945-01A-01D-1421-08	100568191	184368249	6786027	14	8637											
FCHSD1	89848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141027542	141027542	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	C	141027542	A	C	141027542	3	2	142	1	0	0	0	0	1	0	0	0	5796	188	7	5	1426	5	FCHSD1	5	141027542	Missense_Mutation	SNP	A	TCGA-B0-4945-01A-01D-1421-08		141027542	39887718	15	8638											
WDR46	9277	broad.mit.edu;ucsc.edu	37	6	33255942	33255942	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	G	33255942	G	G	33255942	3	3	142	1	0	0	0	0	1	0	0	0	17311	1464	51	5	1332	5	WDR46	6	33255942	Missense_Mutation	SNP	T	TCGA-B0-4945-01A-01D-1421-08		33255942	137859125	16	8639											
DAXX	1616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33288852	33288852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	33288852	G	A	33288852	3	1	142	1	0	0	0	0	1	0	0	0	4245	1116	39	1	1546	1	DAXX	6	33288852	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08	32910	33288852	137826215	17	8640											
ZNF716	441234	broad.mit.edu	37	7	57529077	57529077	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	57529077	A	A	57529077	3	1	142	1	0	0	0	0	1	0	0	0	18131	971	34	2	924	2	ZNF716	7	57529077	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08		57529077	101609586	18	8641											
CCDC132	55610	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92921015	92921015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	92921015	C	A	92921015	3	1	142	1	0	0	0	0	1	0	0	0	2769	724	25	4	1035	4	CCDC132	7	92921015	Missense_Mutation	SNP	C	TCGA-B0-4945-01A-01D-1421-08	35391938	92921015	66217648	19	8642											
COG5	10466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	106924166	106924166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	106924166	G	A	106924166	3	1	142	1	0	0	0	0	1	0	0	0	3663	971	34	2	1208	2	COG5	7	106924166	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08	14003151	106924166	52214497	20	8643											
MLL3	58508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151878457	151878457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	151878457	G	T	151878457	3	4	142	1	0	0	0	0	1	0	0	0	9629	1000	35	4	8343	4	MLL3	7	151878457	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08	44954291	151878457	7260206	21	8644											
HINT2	84681	hgsc.bcm.edu;ucsc.edu	37	9	35813449	35813451	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	-	35813451	TCT	-	35813449	7	5	142	1	0	1	0	1	0	0	0	0	7119	1667	58	0	183	0	HINT2	9	35813449	In_Frame_Del	DEL	TCT	TCGA-B0-4945-01A-01D-1421-08		35813449	105399982	22	8645											
HSPA5	3309	broad.mit.edu;hgsc.bcm.edu	37	9	128001354	128001354	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	C	128001354	G	C	128001354	3	2	142	1	0	0	0	0	1	0	0	0	7421	1029	36	4	1118	4	HSPA5	9	128001354	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08	92187905	128001354	13212077	23	8646											
AGAP6	414189	broad.mit.edu	37	10	51769499	51769499	+	Silent	SNP	C	T	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	51769499	T	T	51769499	2	4	142	1	0	0	0	0	0	0	0	1	372	506	18	2		2	AGAP6	10	51769499	Silent	SNP	C	TCGA-B0-4945-01A-01D-1421-08		51769499	83765248	24	8647											
SMC3	9126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	112340772	112340772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	112340772	A	T	112340772	3	4	142	1	0	0	0	0	1	0	0	0	14797	69	3	5	570	5	SMC3	10	112340772	Missense_Mutation	SNP	A	TCGA-B0-4945-01A-01D-1421-08	60571273	112340772	23193975	25	8648											
ZRANB1	54764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	126671767	126671767	+	Silent	SNP	G	G	A	rs75293113	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	126671767	G	A	126671767	2	1	142	1	0	0	0	0	0	0	0	1	18234	1074	38	1		1	ZRANB1	10	126671767	Silent	SNP	G	TCGA-B0-4945-01A-01D-1421-08	14330995	126671767	8862980	26	8649											
ARHGAP32	9743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	129062035	129062035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	129062035	G	A	129062035	3	1	142	1	0	0	0	0	1	0	0	0	881	942	33	2	6292	2	ARHGAP32	11	129062035	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08		129062035	5944481	27	8650											
DDX23	9416	hgsc.bcm.edu	37	12	49233688	49233689	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	G	49233689	-	G	49233688	7	5	142	1	0	1	1	0	0	0	0	0	4352	1580	55	0	2095	0	DDX23	12	49233688	Frame_Shift_Ins	INS	-	TCGA-B0-4945-01A-01D-1421-08		49233688	84618207	28	8651											
RIC8B	55188	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	107237651	107237651	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	G	107237651	C	G	107237651	3	3	142	1	0	0	0	0	1	0	0	0	13369	912	32	4	1109	4	RIC8B	12	107237651	Missense_Mutation	SNP	C	TCGA-B0-4945-01A-01D-1421-08	58003963	107237651	26614244	29	8652											
TMEM132D	121256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	129559305	129559305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	129559305	G	T	129559305	3	4	142	1	0	0	0	0	1	0	0	0	16059	1368	48	4	888	4	TMEM132D	12	129559305	Missense_Mutation	SNP	G	TCGA-B0-4945-01A-01D-1421-08	22321654	129559305	4292590	30	8653											
C14orf2	9556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	104381489	104381489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	G	104381489	A	G	104381489	3	3	142	1	0	0	0	0	1	0	0	0	1770	217	8	3	150	3	C14orf2	14	104381489	Missense_Mutation	SNP	A	TCGA-B0-4945-01A-01D-1421-08		104381489	2968051	31	8654											
PLA2G4D	283748	hgsc.bcm.edu	37	15	42363043	42363043	+	Missense_Mutation	SNP	T	T	G	rs74678783	bycluster;byfrequency;by1000genomes	TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	G	42363043	T	G	42363043	3	3	142	1	0	0	0	0	1	0	0	0	12011	1821	63	5	553	5	PLA2G4D	15	42363043	Missense_Mutation	SNP	T	TCGA-B0-4945-01A-01D-1421-08		42363043	60168349	32	8655											
MPP3	4356	broad.mit.edu	37	17	41898423	41898423	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	41898423	T	T	41898423	3	4	142	1	0	0	0	0	1	0	0	0	9742	43	2	5	1109	5	MPP3	17	41898423	Missense_Mutation	SNP	A	TCGA-B0-4945-01A-01D-1421-08		41898423	39296787	33	8656											
TCF3	6929	broad.mit.edu	37	19	1623968	1623968	+	Silent	SNP	C	T	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	1623968	T	T	1623968	2	4	142	1	0	0	0	0	0	0	0	1	15706	755	27	1		1	TCF3	19	1623968	Silent	SNP	C	TCGA-B0-4945-01A-01D-1421-08		1623968	57505015	34	8657											
UBA2	10054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	34959981	34959981	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	C	34959981	A	C	34959981	3	2	142	1	0	0	0	0	1	0	0	0	16840	333	12	5	1844	5	UBA2	19	34959981	Missense_Mutation	SNP	A	TCGA-B0-4945-01A-01D-1421-08	33336013	34959981	24169002	35	8658											
PTGIR	5739	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	47124908	47124908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	G	47124908	C	G	47124908	3	3	142	1	0	0	0	0	1	0	0	0	12762	478	17	4	374	4	PTGIR	19	47124908	Missense_Mutation	SNP	C	TCGA-B0-4945-01A-01D-1421-08	12164927	47124908	12004075	36	8659											
PABPC1L	80336	broad.mit.edu	37	20	43564119	43564119	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	A	43564119	A	A	43564119	3	1	142	1	0	0	0	0	1	0	0	0	11371	710	25	4	1574	4	PABPC1L	20	43564119	Missense_Mutation	SNP	C	TCGA-B0-4945-01A-01D-1421-08		43564119	19461401	37	8660											
RIMBP3	85376	hgsc.bcm.edu	37	22	20458121	20458122	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	C	20458122	-	C	20458121	7	5	142	1	0	1	1	0	0	0	0	0	13377	1203	42	0	1742	0	RIMBP3	22	20458121	Frame_Shift_Ins	INS	-	TCGA-B0-4945-01A-01D-1421-08		20458121	30846445	38	8661											
LIMK2	3985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	31664140	31664140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	T	31664140	C	T	31664140	3	4	142	1	0	0	0	0	1	0	0	0	8809	623	22	2	1370	2	LIMK2	22	31664140	Missense_Mutation	SNP	C	TCGA-B0-4945-01A-01D-1421-08	11206019	31664140	19640426	39	8662											
SLC7A3	84889	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	70147814	70147814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-4945-01A-01D-1421-08	TCGA-B0-4945-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9fae377f-6c63-4f47-a769-a1396fb15f56	c3df2623-db3a-4d8f-a062-5d2a7ec550a7	C	70147814	A	C	70147814	3	2	142	1	0	0	0	0	1	0	0	0	14711	275	10	5	1010	5	SLC7A3	23	70147814	Missense_Mutation	SNP	A	TCGA-B0-4945-01A-01D-1421-08		70147814	85122746	40	8663											
KDM6A	7403	hgsc.bcm.edu	37	X	44732886	44732886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1392-10	TCGA-B0-5075-11A-01D-1392-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	0807b5fd-c193-41c9-bc78-015db179bafd	a3072f6e-9882-45f3-a3f6-a4e3fa1d71f2	T	44732886	C	T	44732886	3	4	143	1	0	0	0	0	1	0	0	0	8144	768	27	1	91	1	KDM6A	23	44732886	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1392-10		44732886	110537674	1	8664											
UBE4B	10277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10163026	10163026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	10163026	A	T	10163026	3	4	144	1	0	0	0	0	1	0	0	0	16895	69	3	5	474	5	UBE4B	1	10163026	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08		10163026	239087595	1	8665											
PRAMEF4	400735	broad.mit.edu;hgsc.bcm.edu	37	1	12943139	12943139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	12943139	G	A	12943139	3	1	144	1	0	0	0	0	1	0	0	0	12447	1203	42	2	1371	2	PRAMEF4	1	12943139	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	2780113	12943139	236307482	2	8666											
COL16A1	1307	broad.mit.edu;hgsc.bcm.edu	37	1	32149718	32149718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	32149718	C	T	32149718	3	4	144	1	0	0	0	0	1	0	0	0	3675	594	21	2	2699	2	COL16A1	1	32149718	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	19206579	32149718	217100903	3	8667											
PARS2	25973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55224207	55224207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	55224207	A	G	55224207	3	3	144	1	0	0	0	0	1	0	0	0	11474	391	14	3	803	3	PARS2	1	55224207	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08	23074489	55224207	194026414	4	8668											
ANGPTL3	27329	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	63063407	63063407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	63063407	T	A	63063407	3	1	144	1	0	0	0	0	1	0	0	0	615	1609	56	5	172	5	ANGPTL3	1	63063407	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	7839200	63063407	186187214	5	8669											
LMO4	8543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	87805218	87805218	+	Splice_Site	SNP	G	G	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	87805218	G	C	87805218	5	2	144	1	0	0	0	0	0	0	1	0	8861	1014	35	4	242	4	LMO4	1	87805218	Splice_Site	SNP	G	TCGA-B0-5075-01A-01D-1462-08	24741811	87805218	161445403	6	8670											
LPPR4	9890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	99771434	99771434	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	99771434	C	G	99771434	3	3	144	1	0	0	0	0	1	0	0	0	8934	478	17	4	1186	4	LPPR4	1	99771434	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	11966216	99771434	149479187	7	8671											
SLC16A4	9122	hgsc.bcm.edu;ucsc.edu	37	1	110923620	110923623	+	Frame_Shift_Del	DEL	ATCT	ATCT	-	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	ATCT	ATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	-	110923623	ATCT	-	110923620	7	5	144	1	0	1	0	1	0	0	0	0	14423	330	12	0	973	0	SLC16A4	1	110923620	Frame_Shift_Del	DEL	ATCT	TCGA-B0-5075-01A-01D-1462-08	11152186	110923620	138327001	8	8672											
THBS3	7059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155170785	155170785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	155170785	A	T	155170785	3	4	144	1	0	0	0	0	1	0	0	0	15867	72	3	5	1463	5	THBS3	1	155170785	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08	44247165	155170785	94079836	9	8673											
LAMC2	3918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183197726	183197726	+	Silent	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	183197726	G	A	183197726	2	1	144	1	0	0	0	0	0	0	0	1	8622	1339	47	2		2	LAMC2	1	183197726	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08	28026941	183197726	66052895	10	8674											
NBAS	51594	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	15607839	15607839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	15607839	T	C	15607839	3	2	144	1	0	0	0	0	1	0	0	0	10193	1783	62	3	5288	3	NBAS	2	15607839	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08		15607839	227591534	11	8675											
ANKRD36B	57730	hgsc.bcm.edu	37	2	98165911	98165912	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	98165912	-	C	98165911	7	5	144	1	0	1	1	0	0	0	0	0	666	1783	62	0	2709	0	ANKRD36B	2	98165911	Frame_Shift_Ins	INS	-	TCGA-B0-5075-01A-01D-1462-08	82558072	98165911	145033462	12	8676											
VHL	7428	broad.mit.edu	37	3	10183864	10183865	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq;PacBio			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	10183865	A	A	10183864	7	5	144	1	0	1	1	0	0	0	0	0	17174	796	28	0	335	0	VHL	3	10183864	Frame_Shift_Ins	INS	-	TCGA-B0-5075-01A-01D-1462-08		10183864	187838566	13	8677											
TBC1D5	9779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	17279709	17279709	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	17279709	G	A	17279709	4	1	144	1	0	0	0	0	0	1	0	0	15635	1386	48	2	947	2	TBC1D5	3	17279709	Nonsense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	7095845	17279709	180742721	14	8678											
OXSR1	9943	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38294372	38294372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	38294372	G	A	38294372	3	1	144	1	0	0	0	0	1	0	0	0	11343	971	34	2	1644	2	OXSR1	3	38294372	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	21014663	38294372	159728058	15	8679											
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52439219	52439238	+	Frame_Shift_Del	DEL	GCTGCCTGGAGGCTTCACCA	GCTGCCTGGAGGCTTCACCA	-	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	GCTGCCTGGAGGCTTCACCA	GCTGCCTGGAGGCTTCACCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	-	52439238	GCTGCCTGGAGGCTTCACCA	-	52439219	7	5	144	1	0	1	0	1	0	0	0	0	1311	1310	46	0	1194	0	BAP1	3	52439219	Frame_Shift_Del	DEL	GCTGCCTGGAGGCTTCACCA	TCGA-B0-5075-01A-01D-1462-08	14144847	52439219	145583211	16	8680											
COL8A1	1295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	99513362	99513362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	99513362	G	A	99513362	3	1	144	1	0	0	0	0	1	0	0	0	3707	1203	42	2	623	2	COL8A1	3	99513362	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	47074143	99513362	98509068	17	8681											
KIAA2018	205717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113377055	113377055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	113377055	C	A	113377055	3	1	144	1	0	0	0	0	1	0	0	0	8275	622	22	4	3267	4	KIAA2018	3	113377055	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	13863693	113377055	84645375	18	8682											
PIK3R4	30849	hgsc.bcm.edu;ucsc.edu	37	3	130463485	130463487	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	-	130463487	CTC	-	130463485	7	5	144	1	0	1	0	1	0	0	0	0	11928	913	32	0	3574	0	PIK3R4	3	130463485	In_Frame_Del	DEL	CTC	TCGA-B0-5075-01A-01D-1462-08	17086430	130463485	67558945	19	8683											
UBA5	79876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	132387698	132387698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	132387698	A	G	132387698	3	3	144	1	0	0	0	0	1	0	0	0	16842	130	5	3	348	3	UBA5	3	132387698	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08	1924213	132387698	65634732	20	8684											
TFDP2	7029	hgsc.bcm.edu;ucsc.edu	37	3	141671843	141671843	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	-	141671843	G	-	141671843	7	5	144	1	0	1	0	1	0	0	0	0	15810	1000	35	0	281	0	TFDP2	3	141671843	Frame_Shift_Del	DEL	G	TCGA-B0-5075-01A-01D-1462-08	9284145	141671843	56350587	21	8685											
FETUB	26998	broad.mit.edu;ucsc.edu	37	3	186364117	186364117	+	Silent	SNP	A	T	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	186364117	T	T	186364117	2	4	144	1	0	0	0	0	0	0	0	1	5828	146	6	5		5	FETUB	3	186364117	Silent	SNP	A	TCGA-B0-5075-01A-01D-1462-08	44692274	186364117	11658313	22	8686											
IDUA	3425	broad.mit.edu	37	4	980873	980873	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	980873	G	G	980873	3	3	144	1	0	0	0	0	1	0	0	0	7511	217	8	3	3	3	IDUA	4	980873	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08		980873	190173403	23	8687											
N4BP2	55728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	40122527	40122527	+	Silent	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	40122527	C	T	40122527	2	4	144	1	0	0	0	0	0	0	0	1	10117	697	25	2		2	N4BP2	4	40122527	Silent	SNP	C	TCGA-B0-5075-01A-01D-1462-08	39141654	40122527	151031749	24	8688											
HERC5	51191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	89385020	89385020	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	89385020	T	G	89385020	3	3	144	1	0	0	0	0	1	0	0	0	7068	1751	61	5	817	5	HERC5	4	89385020	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	49262493	89385020	101769256	25	8689											
LARP1B	55132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	129043237	129043237	+	Missense_Mutation	SNP	G	G	C	rs142360155	alternate_allele	TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	129043237	G	C	129043237	3	2	144	1	0	0	0	0	1	0	0	0	8636	1116	39	4	1541	4	LARP1B	4	129043237	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	39658217	129043237	62111039	26	8690											
GPX3	2878	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150407548	150407548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	150407548	C	A	150407548	3	1	144	1	0	0	0	0	1	0	0	0	6748	652	23	4	556	4	GPX3	5	150407548	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08		150407548	30507712	27	8691											
ABCF1	23	broad.mit.edu;hgsc.bcm.edu	37	6	30548295	30548295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	30548295	A	G	30548295	3	3	144	1	0	0	0	0	1	0	0	0	65	202	7	3	707	3	ABCF1	6	30548295	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08		30548295	140566772	28	8692											
ZNF76	7629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35258122	35258122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	35258122	G	T	35258122	3	4	144	1	0	0	0	0	1	0	0	0	18147	1203	42	4	530	4	ZNF76	6	35258122	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	4709827	35258122	135856945	29	8693											
C6orf64	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	39073238	39073238	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	39073238	C	G	39073238	3	3	144	1	0	0	0	0	1	0	0	0	2371	564	20	4	33	4	C6orf64	6	39073238	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	3815116	39073238	132041829	30	8694											
ABCC10	89845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43402438	43402438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	43402438	C	T	43402438	3	4	144	1	0	0	0	0	1	0	0	0	50	739	26	2	1337	2	ABCC10	6	43402438	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	4329200	43402438	127712629	31	8695											
EPHA7	2045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	93964470	93964470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	93964470	C	A	93964470	3	1	144	1	0	0	0	0	1	0	0	0	5174	564	20	4	585	4	EPHA7	6	93964470	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	50562032	93964470	77150597	32	8696											
TIAM2	26230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	155498049	155498049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	155498049	G	A	155498049	3	1	144	1	0	0	0	0	1	0	0	0	15903	1117	39	1	2487	1	TIAM2	6	155498049	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	61533579	155498049	15617018	33	8697											
TBP	6908	hgsc.bcm.edu;ucsc.edu	37	6	170878701	170878703	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	-	170878703	GAA	-	170878701	7	5	144	1	0	1	0	1	0	0	0	0	15656	1304	45	0	697	0	TBP	6	170878701	In_Frame_Del	DEL	GAA	TCGA-B0-5075-01A-01D-1462-08	15380652	170878701	236366	34	8698											
FBXL18	80028	broad.mit.edu;ucsc.edu	37	7	5541300	5541300	+	Silent	SNP	G	A	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	5541300	A	A	5541300	2	1	144	1	0	0	0	0	0	0	0	1	5721	1024	36	2		2	FBXL18	7	5541300	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08		5541300	153597363	35	8699											
POU6F2	11281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	39247075	39247075	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	39247075	A	T	39247075	3	4	144	1	0	0	0	0	1	0	0	0	12292	217	8	5	381	5	POU6F2	7	39247075	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08	33705775	39247075	119891588	36	8700											
AMAC1L2	0	broad.mit.edu;hgsc.bcm.edu	37	8	11188632	11188632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	11188632	C	A	11188632	3	1	144	1	0	0	0	0	1	0	0	0	560	623	22	4	19	4	AMAC1L2	8	11188632	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08		11188632	135175390	37	8701											
MTUS1	57509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17612616	17612616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	17612616	G	T	17612616	3	4	144	1	0	0	0	0	1	0	0	0	9972	1377	48	4	3486	4	MTUS1	8	17612616	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	6423984	17612616	128751406	38	8702											
XPO7	23039	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	21840307	21840307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	21840307	G	C	21840307	3	2	144	1	0	0	0	0	1	0	0	0	17461	1377	48	4	1355	4	XPO7	8	21840307	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	4227691	21840307	124523715	39	8703											
VCPIP1	80124	hgsc.bcm.edu;ucsc.edu	37	8	67546975	67546980	+	In_Frame_Del	DEL	CAACTT	CAACTT	-	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	CAACTT	CAACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	-	67546980	CAACTT	-	67546975	7	5	144	1	0	1	0	1	0	0	0	0	17153	478	17	0	242	0	VCPIP1	8	67546975	In_Frame_Del	DEL	CAACTT	TCGA-B0-5075-01A-01D-1462-08	45706668	67546975	78817047	40	8704											
UQCRB	7381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	97244062	97244062	+	Silent	SNP	T	T	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	97244062	T	A	97244062	2	1	144	1	0	0	0	0	0	0	0	1	17030	1683	59	5		5	UQCRB	8	97244062	Silent	SNP	T	TCGA-B0-5075-01A-01D-1462-08	29697087	97244062	49119960	41	8705											
UBR5	51366	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	103341598	103341598	+	Silent	SNP	A	A	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	103341598	A	G	103341598	2	3	144	1	0	0	0	0	0	0	0	1	16917	291	11	3		3	UBR5	8	103341598	Silent	SNP	A	TCGA-B0-5075-01A-01D-1462-08	6097536	103341598	43022424	42	8706											
DENND3	22898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	142178354	142178354	+	Silent	SNP	C	C	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	142178354	C	A	142178354	2	1	144	1	0	0	0	0	0	0	0	1	4434	527	19	4		4	DENND3	8	142178354	Silent	SNP	C	TCGA-B0-5075-01A-01D-1462-08	38836756	142178354	4185668	43	8707											
SPATC1	375686	broad.mit.edu	37	8	145096167	145096167	+	Silent	SNP	T	G	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	145096167	G	G	145096167	2	3	144	1	0	0	0	0	0	0	0	1	15029	1683	59	5		5	SPATC1	8	145096167	Silent	SNP	T	TCGA-B0-5075-01A-01D-1462-08	2917813	145096167	1267855	44	8708											
TXN	7295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	113007067	113007067	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	113007067	C	G	113007067	3	3	144	1	0	0	0	0	1	0	0	0	16802	680	24	4	79	4	TXN	9	113007067	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08		113007067	28206364	45	8709											
AKNA	80709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	117106062	117106062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	117106062	G	T	117106062	3	4	144	1	0	0	0	0	1	0	0	0	463	1174	41	4	652	4	AKNA	9	117106062	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	4098995	117106062	24107369	46	8710											
DEC1	50514	broad.mit.edu;hgsc.bcm.edu	37	9	118163493	118163493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	118163493	A	G	118163493	3	3	144	1	0	0	0	0	1	0	0	0	4383	180	7	3	119	3	DEC1	9	118163493	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08	1057431	118163493	23049938	47	8711											
SLC2A6	11182	hgsc.bcm.edu;ucsc.edu	37	9	136340534	136340534	+	Silent	SNP	G	G	A	rs115835881	bycluster;byfrequency;by1000genomes	TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	136340534	G	A	136340534	2	1	144	1	0	0	0	0	0	0	0	1	14562	1136	40	1		1	SLC2A6	9	136340534	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08	18177041	136340534	4872897	48	8712											
GRID1	2894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	87407078	87407078	+	Silent	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	87407078	G	T	87407078	2	4	144	1	0	0	0	0	0	0	0	1	6778	1124	39	4		4	GRID1	10	87407078	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08		87407078	48127669	49	8713											
MMRN2	79812	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	88702115	88702115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	88702115	C	G	88702115	3	3	144	1	0	0	0	0	1	0	0	0	9678	623	22	4	431	4	MMRN2	10	88702115	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	1295037	88702115	46832632	50	8714											
TLL2	7093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	98273269	98273269	+	Silent	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	98273269	G	A	98273269	2	1	144	1	0	0	0	0	0	0	0	1	15958	1130	39	1		1	TLL2	10	98273269	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08	9571154	98273269	37261478	51	8715											
SFXN4	119559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	120917388	120917388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	120917388	T	G	120917388	3	3	144	1	0	0	0	0	1	0	0	0	14210	1609	56	5	575	5	SFXN4	10	120917388	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	22644119	120917388	14617359	52	8716											
WDR11	55717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	122663626	122663626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	122663626	G	A	122663626	3	1	144	1	0	0	0	0	1	0	0	0	17285	1377	48	2	3093	2	WDR11	10	122663626	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	1746238	122663626	12871121	53	8717											
MUC2	4583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1086012	1086012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	1086012	C	T	1086012	3	4	144	1	0	0	0	0	1	0	0	0	9982	536	19	1	2938	1	MUC2	11	1086012	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08		1086012	133920504	54	8718											
MUC2	4583	broad.mit.edu	37	11	1090371	1090371	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	1090371	A	A	1090371	3	1	144	1	0	0	0	0	1	0	0	0	9982	739	26	4	3773	4	MUC2	11	1090371	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	4359	1090371	133916145	55	8719											
LDHC	3948	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18460186	18460186	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	-	18460186	T	-	18460186	7	5	144	1	0	1	0	1	0	0	0	0	8709	1493	52	0	722	0	LDHC	11	18460186	Frame_Shift_Del	DEL	T	TCGA-B0-5075-01A-01D-1462-08	17369815	18460186	116546330	56	8720											
SPRYD5	0	broad.mit.edu;ucsc.edu	37	11	55653128	55653128	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	55653128	A	A	55653128	3	1	144	1	0	0	0	0	1	0	0	0	15123	1783	62	5	226	5	SPRYD5	11	55653128	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	37192942	55653128	79353388	57	8721											
SLC22A9	114571	broad.mit.edu;hgsc.bcm.edu	37	11	63175588	63175588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	63175588	G	A	63175588	3	1	144	1	0	0	0	0	1	0	0	0	14474	1319	46	2	1323	2	SLC22A9	11	63175588	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	7522460	63175588	71830928	58	8722											
TM7SF2	7108	broad.mit.edu	37	11	64879505	64879505	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	-	64879505	-	-	64879505	7	5	144	1	0	1	0	1	0	0	0	0	15986	726	26	0	20	0	TM7SF2	11	64879505	Frame_Shift_Del	DEL	C	TCGA-B0-5075-01A-01D-1462-08	1703917	64879505	70127011	59	8723											
AASDHPPT	60496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	105962108	105962108	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	105962108	A	T	105962108	3	4	144	1	0	0	0	0	1	0	0	0	23	98	4	5	611	5	AASDHPPT	11	105962108	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08	41082603	105962108	29044408	60	8724											
C12orf11	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	27059272	27059272	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	27059272	T	A	27059272	4	1	144	1	0	0	0	0	0	1	0	0	1677	1588	55	5	84	5	C12orf11	12	27059272	Nonsense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08		27059272	106792623	61	8725											
GNS	2799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	65136922	65136922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	65136922	G	A	65136922	3	1	144	1	0	0	0	0	1	0	0	0	6557	1159	40	1	903	1	GNS	12	65136922	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	38077650	65136922	68714973	62	8726											
CAND1	55832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	67696132	67696132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	67696132	G	T	67696132	3	4	144	1	0	0	0	0	1	0	0	0	2617	1290	45	4	1060	4	CAND1	12	67696132	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	2559210	67696132	66155763	63	8727											
ANKS1B	56899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	99793525	99793525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	99793525	T	C	99793525	3	2	144	1	0	0	0	0	1	0	0	0	689	1406	49	3	2454	3	ANKS1B	12	99793525	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	32097393	99793525	34058370	64	8728											
TRPV4	59341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	110240804	110240804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	110240804	T	C	110240804	3	2	144	1	0	0	0	0	1	0	0	0	16610	1638	57	3	1963	3	TRPV4	12	110240804	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	10447279	110240804	23611091	65	8729											
EBPL	84650	broad.mit.edu;hgsc.bcm.edu	37	13	50243946	50243946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	50243946	C	T	50243946	3	4	144	1	0	0	0	0	1	0	0	0	4889	536	19	1	424	1	EBPL	13	50243946	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08		50243946	64925932	66	8730	87	2									
EBPL	84650	broad.mit.edu;hgsc.bcm.edu	37	13	50243947	50243947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	50243947	G	T	50243947	3	4	144	1	0	0	0	0	1	0	0	0	4889	1136	40	4	425	4	EBPL	13	50243947	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	1	50243947	64925931	67	8731	87	2									
INSM2	84684	hgsc.bcm.edu;ucsc.edu	37	14	36005119	36005119	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	-	36005119	A	-	36005119	7	5	144	1	0	1	0	1	0	0	0	0	7779	130	5	0	1663	0	INSM2	14	36005119	Frame_Shift_Del	DEL	A	TCGA-B0-5075-01A-01D-1462-08		36005119	71344421	68	8732											
SEC23A	10484	broad.mit.edu;hgsc.bcm.edu	37	14	39511999	39511999	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	39511999	A	C	39511999	4	2	144	1	0	0	0	0	0	1	0	0	14004	340	12	5	336	5	SEC23A	14	39511999	Nonsense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08	3506880	39511999	67837541	69	8733											
JMJD7	100137047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42127085	42127085	+	Missense_Mutation	SNP	A	A	G	rs148006565		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	42127085	A	G	42127085	3	3	144	1	0	0	0	0	1	0	0	0	7961	449	16	3	218	3	JMJD7	15	42127085	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08		42127085	60404307	70	8734											
THAP10	56906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	71174954	71174954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	71174954	G	T	71174954	3	4	144	1	0	0	0	0	1	0	0	0	15854	1020	36	4	164	4	THAP10	15	71174954	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	29047869	71174954	31356438	71	8735											
CCDC33	80125	broad.mit.edu;ucsc.edu	37	15	74622668	74622668	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	74622668	A	A	74622668	3	1	144	1	0	0	0	0	1	0	0	0	2808	1232	43	2	1548	2	CCDC33	15	74622668	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	3447714	74622668	27908724	72	8736											
IL16	3603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	81601012	81601012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	81601012	C	T	81601012	3	4	144	1	0	0	0	0	1	0	0	0	7640	739	26	2	3942	2	IL16	15	81601012	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	6978344	81601012	20930380	73	8737											
RCCD1	91433	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91504264	91504264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	91504264	A	C	91504264	3	2	144	1	0	0	0	0	1	0	0	0	13188	304	11	5	981	5	RCCD1	15	91504264	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08	9903252	91504264	11027128	74	8738											
RHOT2	89941	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	720301	720301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	720301	A	G	720301	3	3	144	1	0	0	0	0	1	0	0	0	13357	217	8	3	408	3	RHOT2	16	720301	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08		720301	89634452	75	8739											
ATXN2L	11273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28841977	28841977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	28841977	G	T	28841977	3	4	144	1	0	0	0	0	1	0	0	0	1212	1261	44	4	1110	4	ATXN2L	16	28841977	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	28121676	28841977	61512776	76	8740											
DCTPP1	79077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30435760	30435760	+	Silent	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	30435760	G	A	30435760	2	1	144	1	0	0	0	0	0	0	0	1	4314	991	35	2		2	DCTPP1	16	30435760	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08	1593783	30435760	59918993	77	8741											
CYB5B	80777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69481136	69481136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	69481136	T	A	69481136	3	1	144	1	0	0	0	0	1	0	0	0	4125	1461	51	5	264	5	CYB5B	16	69481136	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	39045376	69481136	20873617	78	8742	88	3									
CYB5B	80777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69481137	69481137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	69481137	G	A	69481137	3	1	144	1	0	0	0	0	1	0	0	0	4125	1319	46	2	265	2	CYB5B	16	69481137	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	1	69481137	20873616	79	8743	88	3									
CYB5B	80777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69481138	69481138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	69481138	C	T	69481138	3	4	144	1	0	0	0	0	1	0	0	0	4125	739	26	2	266	2	CYB5B	16	69481138	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	1	69481138	20873615	80	8744	88	3									
ZC3H18	124245	broad.mit.edu;ucsc.edu	37	16	88696911	88696911	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	88696911	T	T	88696911	3	4	144	1	0	0	0	0	1	0	0	0	17580	838	29	2	2647	2	ZC3H18	16	88696911	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	19215773	88696911	1657842	81	8745											
EFCAB5	374786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	28384816	28384816	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	28384816	G	C	28384816	3	2	144	1	0	0	0	0	1	0	0	0	4940	942	33	4	2538	4	EFCAB5	17	28384816	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08		28384816	52810394	82	8746											
VAT1	10493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41168133	41168133	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	41168133	T	G	41168133	3	3	144	1	0	0	0	0	1	0	0	0	17141	1551	54	5	58	5	VAT1	17	41168133	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	12783317	41168133	40027077	83	8747											
AXIN2	8313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	63532473	63532473	+	Silent	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	63532473	G	T	63532473	2	4	144	1	0	0	0	0	0	0	0	1	1237	1306	46	4		4	AXIN2	17	63532473	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08	22364340	63532473	17662737	84	8748											
ABCA8	10351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	66878106	66878106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	66878106	C	A	66878106	3	1	144	1	0	0	0	0	1	0	0	0	38	710	25	4	1061	4	ABCA8	17	66878106	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	3345633	66878106	14317104	85	8749											
TTC39C	125488	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	21694593	21694593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	21694593	G	A	21694593	3	1	144	1	0	0	0	0	1	0	0	0	16721	1377	48	2	1086	2	TTC39C	18	21694593	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08		21694593	56382655	86	8750											
CDH2	1000	broad.mit.edu;ucsc.edu	37	18	25591824	25591824	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	25591824	A	A	25591824	4	1	144	1	0	0	0	0	0	1	0	0	3107	1299	45	2	2240	2	CDH2	18	25591824	Nonsense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08	3897231	25591824	52485424	87	8751											
ABCA7	10347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1043790	1043790	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	1043790	C	G	1043790	3	3	144	1	0	0	0	0	1	0	0	0	37	507	18	4	1031	4	ABCA7	19	1043790	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08		1043790	58085193	88	8752											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9067241	9067241	+	Silent	SNP	G	G	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	9067241	G	T	9067241	2	4	144	1	0	0	0	0	0	0	0	1	9980	1280	45	4		4	MUC16	19	9067241	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08	8023451	9067241	50061742	89	8753	89	2									
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9067242	9067242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	9067242	A	G	9067242	3	3	144	1	0	0	0	0	1	0	0	0	9980	333	12	3	23647	3	MUC16	19	9067242	Missense_Mutation	SNP	A	TCGA-B0-5075-01A-01D-1462-08	1	9067242	50061741	90	8754	89	2									
PDE4A	5141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10568586	10568586	+	Silent	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	10568586	C	T	10568586	2	4	144	1	0	0	0	0	0	0	0	1	11646	581	21	2		2	PDE4A	19	10568586	Silent	SNP	C	TCGA-B0-5075-01A-01D-1462-08	1501344	10568586	48560397	91	8755											
TNPO2	30000	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12825697	12825697	+	Silent	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	12825697	C	T	12825697	2	4	144	1	0	0	0	0	0	0	0	1	16348	564	20	2		2	TNPO2	19	12825697	Silent	SNP	C	TCGA-B0-5075-01A-01D-1462-08	2257111	12825697	46303286	92	8756											
NR2C2AP	126382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19313200	19313200	+	Silent	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	19313200	C	T	19313200	2	4	144	1	0	0	0	0	0	0	0	1	10631	680	24	2		2	NR2C2AP	19	19313200	Silent	SNP	C	TCGA-B0-5075-01A-01D-1462-08	6487503	19313200	39815783	93	8757											
GRAMD1A	57655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	35501023	35501023	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	35501023	T	G	35501023	3	3	144	1	0	0	0	0	1	0	0	0	6754	1435	50	5	371	5	GRAMD1A	19	35501023	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	16187823	35501023	23627960	94	8758											
FCGBP	8857	broad.mit.edu	37	19	40376319	40376319	+	Silent	SNP	G	A	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	40376319	A	A	40376319	2	1	144	1	0	0	0	0	0	0	0	1	5785	1024	36	2		2	FCGBP	19	40376319	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08	4875296	40376319	18752664	95	8759											
CEACAM5	1048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42221409	42221409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	42221409	T	G	42221409	3	3	144	1	0	0	0	0	1	0	0	0	3197	1551	54	5	1012	5	CEACAM5	19	42221409	Missense_Mutation	SNP	T	TCGA-B0-5075-01A-01D-1462-08	1845090	42221409	16907574	96	8760											
PLEKHA4	57664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49362923	49362923	+	Silent	SNP	A	A	C	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	C	49362923	A	C	49362923	2	2	144	1	0	0	0	0	0	0	0	1	12065	175	7	5		5	PLEKHA4	19	49362923	Silent	SNP	A	TCGA-B0-5075-01A-01D-1462-08	7141514	49362923	9766060	97	8761											
MACROD2	140733	ucsc.edu	37	20	15412103	15412103	+	Intron	SNP	A	A	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	15412103	A	T	15412103	1	4	144	0	1	0	0	0	0	0	0	0	9153	348	12	5		5	MACROD2	20	15412103	Intron	SNP	A	TCGA-B0-5075-01A-01D-1462-08		15412103	47613417	98	8762											
PIGU	128869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33245016	33245016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	33245016	C	A	33245016	3	1	144	1	0	0	0	0	1	0	0	0	11907	565	20	4	1188	4	PIGU	20	33245016	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	17832913	33245016	29780504	99	8763											
ZNF831	128611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	57766296	57766296	+	Silent	SNP	C	C	T	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	T	57766296	C	T	57766296	2	4	144	1	0	0	0	0	0	0	0	1	18197	755	27	1		1	ZNF831	20	57766296	Silent	SNP	C	TCGA-B0-5075-01A-01D-1462-08	24521280	57766296	5259224	100	8764											
ADM2	79924	broad.mit.edu	37	22	50921276	50921276	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	50921276	A	A	50921276	3	1	144	1	0	0	0	0	1	0	0	0	322	1203	42	2	397	2	ADM2	22	50921276	Missense_Mutation	SNP	G	TCGA-B0-5075-01A-01D-1462-08		50921276	383290	101	8765											
ARL13A	392509	hgsc.bcm.edu	37	X	100240888	100240889	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	G	100240889	-	G	100240888	7	5	144	1	0	1	1	0	0	0	0	0	928	175	7	0	373	0	ARL13A	23	100240888	Frame_Shift_Ins	INS	-	TCGA-B0-5075-01A-01D-1462-08		100240888	55029672	102	8766											
CAPN6	827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	110491970	110491970	+	Silent	SNP	G	G	A	novel		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	110491970	G	A	110491970	2	1	144	1	0	0	0	0	0	0	0	1	2632	1252	44	2		2	CAPN6	23	110491970	Silent	SNP	G	TCGA-B0-5075-01A-01D-1462-08	10251082	110491970	44778590	103	8767											
HPRT1	3251	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	133609298	133609298	+	Missense_Mutation	SNP	C	C	A	rs137852481		TCGA-B0-5075-01A-01D-1462-08	TCGA-B0-5075-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93237b8e-c9a1-45dd-b160-cfe97e648598	efae71ac-e747-402b-bb95-346f534076cd	A	133609298	C	A	133609298	3	1	144	1	0	0	0	0	1	0	0	0	7345	912	32	4	232	4	HPRT1	23	133609298	Missense_Mutation	SNP	C	TCGA-B0-5075-01A-01D-1462-08	23117328	133609298	21661262	104	8768											
CA14	23632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150235516	150235516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	150235516	A	G	150235516	3	3	145	1	0	0	0	0	1	0	0	0	2517	101	4	3	664	3	CA14	1	150235516	Missense_Mutation	SNP	A	TCGA-B0-5077-01A-01D-1462-08		150235516	99015105	1	8769											
MEX3A	92312	broad.mit.edu	37	1	156046832	156046832	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	156046832	A	A	156046832	3	1	145	1	0	0	0	0	1	0	0	0	9516	652	23	4	470	4	MEX3A	1	156046832	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08	5811316	156046832	93203789	2	8770											
PIGM	93183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160001252	160001252	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	160001252	A	T	160001252	3	4	145	1	0	0	0	0	1	0	0	0	11899	304	11	5	997	5	PIGM	1	160001252	Missense_Mutation	SNP	A	TCGA-B0-5077-01A-01D-1462-08	3954420	160001252	89249369	3	8771											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179642494	179642494	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	-	179642494	T	-	179642494	7	5	145	1	0	1	0	1	0	0	0	0	16747	1725	60	0	106923	0	TTN	2	179642494	Frame_Shift_Del	DEL	T	TCGA-B0-5077-01A-01D-1462-08		179642494	63556879	4	8772											
SSFA2	6744	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	182774683	182774683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	182774683	A	G	182774683	3	3	145	1	0	0	0	0	1	0	0	0	15195	391	14	3	1505	3	SSFA2	2	182774683	Missense_Mutation	SNP	A	TCGA-B0-5077-01A-01D-1462-08	3132189	182774683	60424690	5	8773											
IRS1	3667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	227661146	227661146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	227661146	G	T	227661146	3	4	145	1	0	0	0	0	1	0	0	0	7847	1174	41	4	1423	4	IRS1	2	227661146	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08	44886463	227661146	15538227	6	8774											
VHL	7428	broad.mit.edu	37	3	10183725	10183725	+	Missense_Mutation	SNP	C	G	G	rs5030826	alternate_allele	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	10183725	G	G	10183725	3	3	145	1	0	0	0	0	1	0	0	0	17174	893	31	4	196	4	VHL	3	10183725	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08		10183725	187838705	7	8775											
CELSR3	1951	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48697119	48697119	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	C	48697119	G	C	48697119	3	2	145	1	0	0	0	0	1	0	0	0	3225	932	33	4	7129	4	CELSR3	3	48697119	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08	38513394	48697119	149325311	8	8776											
QRICH1	54870	hgsc.bcm.edu	37	3	49094428	49094437	+	Frame_Shift_Del	DEL	ACAGCCTGCA	ACAGCCTGCA	-	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	ACAGCCTGCA	ACAGCCTGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	-	49094437	ACAGCCTGCA	-	49094428	7	5	145	1	0	1	0	1	0	0	0	0	12892	159	6	0	1157	0	QRICH1	3	49094428	Frame_Shift_Del	DEL	ACAGCCTGCA	TCGA-B0-5077-01A-01D-1462-08	397309	49094428	148928002	9	8777											
HYAL2	8692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	50357640	50357640	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	50357640	C	G	50357640	3	3	145	1	0	0	0	0	1	0	0	0	7471	681	24	4	1152	4	HYAL2	3	50357640	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08	1263212	50357640	147664790	10	8778											
COL6A6	131873	hgsc.bcm.edu;ucsc.edu	37	3	130287096	130287096	+	Silent	SNP	C	C	T	rs61730501	byfrequency;by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	130287096	C	T	130287096	2	4	145	1	0	0	0	0	0	0	0	1	3705	767	27	1		1	COL6A6	3	130287096	Silent	SNP	C	TCGA-B0-5077-01A-01D-1462-08	79929456	130287096	67735334	11	8779											
MRAS	22808	broad.mit.edu;ucsc.edu	37	3	138117372	138117372	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	138117372	T	T	138117372	3	4	145	1	0	0	0	0	1	0	0	0	9762	159	6	5	419	5	MRAS	3	138117372	Missense_Mutation	SNP	A	TCGA-B0-5077-01A-01D-1462-08	7830276	138117372	59905058	12	8780											
ADAM29	11086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	175898804	175898804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	175898804	G	T	175898804	3	4	145	1	0	0	0	0	1	0	0	0	247	1377	48	4	2130	4	ADAM29	4	175898804	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08		175898804	15255472	13	8781											
ADAMTS19	171019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	129015555	129015555	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	129015555	C	T	129015555	4	4	145	1	0	0	0	0	0	1	0	0	264	528	19	1	2653	1	ADAMTS19	5	129015555	Nonsense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08		129015555	51899705	14	8782											
F12	2161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176831333	176831333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	176831333	C	A	176831333	3	1	145	1	0	0	0	0	1	0	0	0	5341	564	20	4	989	4	F12	5	176831333	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08	47815778	176831333	4083927	15	8783											
DBN1	1627	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176893974	176893974	+	Silent	SNP	C	C	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	176893974	C	A	176893974	2	1	145	1	0	0	0	0	0	0	0	1	4254	726	26	4		4	DBN1	5	176893974	Silent	SNP	C	TCGA-B0-5077-01A-01D-1462-08	62641	176893974	4021286	16	8784											
TRIM41	90933	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	180651530	180651530	+	Silent	SNP	T	T	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	180651530	T	A	180651530	2	1	145	1	0	0	0	0	0	0	0	1	16528	1538	54	5		5	TRIM41	5	180651530	Silent	SNP	T	TCGA-B0-5077-01A-01D-1462-08	3757556	180651530	263730	17	8785											
TDP2	51567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	24658870	24658870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	24658870	G	A	24658870	3	1	145	1	0	0	0	0	1	0	0	0	15741	942	33	2	764	2	TDP2	6	24658870	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08		24658870	146456197	18	8786											
LRRC16A	55604	broad.mit.edu;ucsc.edu	37	6	25509937	25509937	+	Silent	SNP	C	T	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	25509937	T	T	25509937	2	4	145	1	0	0	0	0	0	0	0	1	8978	477	17	2		2	LRRC16A	6	25509937	Silent	SNP	C	TCGA-B0-5077-01A-01D-1462-08	851067	25509937	145605130	19	8787											
MDN1	23195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90513110	90513110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	90513110	T	G	90513110	3	3	145	1	0	0	0	0	1	0	0	0	9422	1435	50	5	16928	5	MDN1	6	90513110	Missense_Mutation	SNP	T	TCGA-B0-5077-01A-01D-1462-08	65003173	90513110	80601957	20	8788											
CAMK2B	816	hgsc.bcm.edu	37	7	44266158	44266159	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	44266159	-	G	44266158	7	5	145	1	0	1	1	0	0	0	0	0	2602	755	27	0	462	0	CAMK2B	7	44266158	Frame_Shift_Ins	INS	-	TCGA-B0-5077-01A-01D-1462-08		44266158	114872505	21	8789											
OR2AE1	81392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99474477	99474477	+	Silent	SNP	A	A	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	99474477	A	G	99474477	2	3	145	1	0	0	0	0	0	0	0	1	10990	108	4	3		3	OR2AE1	7	99474477	Silent	SNP	A	TCGA-B0-5077-01A-01D-1462-08	55208319	99474477	59664186	22	8790											
ZKSCAN1	7586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99631276	99631276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	C	99631276	G	C	99631276	3	2	145	1	0	0	0	0	1	0	0	0	17698	1261	44	4	1166	4	ZKSCAN1	7	99631276	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08	156799	99631276	59507387	23	8791											
TNKS	8658	broad.mit.edu;hgsc.bcm.edu	37	8	9413533	9413533	+	Silent	SNP	G	G	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	9413533	G	T	9413533	2	4	145	1	0	0	0	0	0	0	0	1	16331	1074	38	4		4	TNKS	8	9413533	Silent	SNP	G	TCGA-B0-5077-01A-01D-1462-08		9413533	136950489	24	8792											
LOXL2	4017	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	23217701	23217701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	23217701	C	T	23217701	3	4	145	1	0	0	0	0	1	0	0	0	8907	536	19	1	1939	1	LOXL2	8	23217701	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08	13804168	23217701	123146321	25	8793											
CPSF1	29894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145634429	145634429	+	Silent	SNP	G	G	C	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	C	145634429	G	C	145634429	2	2	145	1	0	0	0	0	0	0	0	1	3826	929	33	4		4	CPSF1	8	145634429	Silent	SNP	G	TCGA-B0-5077-01A-01D-1462-08	122416728	145634429	729593	26	8794											
MPDZ	8777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	13221425	13221427	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	-	13221427	TCC	-	13221425	7	5	145	1	0	1	0	1	0	0	0	0	9729	1770	62	0	5463	0	MPDZ	9	13221425	In_Frame_Del	DEL	TCC	TCGA-B0-5077-01A-01D-1462-08		13221425	127992006	27	8795											
TTC39B	158219	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	15211317	15211317	+	Silent	SNP	C	C	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	15211317	C	T	15211317	2	4	145	1	0	0	0	0	0	0	0	1	16720	680	24	2		2	TTC39B	9	15211317	Silent	SNP	C	TCGA-B0-5077-01A-01D-1462-08	1989892	15211317	126002114	28	8796											
SURF4	6836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136233529	136233529	+	Silent	SNP	G	G	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	136233529	G	A	136233529	2	1	145	1	0	0	0	0	0	0	0	1	15417	1310	46	2		2	SURF4	9	136233529	Silent	SNP	G	TCGA-B0-5077-01A-01D-1462-08	121022212	136233529	4979902	29	8797											
HTR7	3363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	92508881	92508881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	92508881	G	T	92508881	3	4	145	1	0	0	0	0	1	0	0	0	7459	1261	44	4	445	4	HTR7	10	92508881	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08		92508881	43025866	30	8798											
ZNF518A	9849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	97920188	97920188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	C	97920188	T	C	97920188	3	2	145	1	0	0	0	0	1	0	0	0	17974	1764	61	3	4111	3	ZNF518A	10	97920188	Missense_Mutation	SNP	T	TCGA-B0-5077-01A-01D-1462-08	5411307	97920188	37614559	31	8799											
KIAA1598	57698	broad.mit.edu	37	10	118645923	118645923	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	118645923	T	T	118645923	3	4	145	1	0	0	0	0	1	0	0	0	8253	893	31	1	71	1	KIAA1598	10	118645923	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08	20725735	118645923	16888824	32	8800											
UBQLNL	143630	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5537653	5537653	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	5537653	G	A	5537653	4	1	145	1	0	0	0	0	0	1	0	0	16912	1066	37	1	1412	1	UBQLNL	11	5537653	Nonsense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08		5537653	129468863	33	8801											
ANO5	203859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	22242734	22242734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	22242734	A	G	22242734	3	3	145	1	0	0	0	0	1	0	0	0	700	72	3	3	290	3	ANO5	11	22242734	Missense_Mutation	SNP	A	TCGA-B0-5077-01A-01D-1462-08	16705081	22242734	112763782	34	8802											
MADD	8567	broad.mit.edu;hgsc.bcm.edu	37	11	47336865	47336865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	C	47336865	T	C	47336865	3	2	145	1	0	0	0	0	1	0	0	0	9159	1435	50	3	4478	3	MADD	11	47336865	Missense_Mutation	SNP	T	TCGA-B0-5077-01A-01D-1462-08	25094131	47336865	87669651	35	8803											
NRXN2	9379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64434814	64434814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	C	64434814	A	C	64434814	3	2	145	1	0	0	0	0	1	0	0	0	10673	217	8	5	3761	5	NRXN2	11	64434814	Missense_Mutation	SNP	A	TCGA-B0-5077-01A-01D-1462-08	17097949	64434814	70571702	36	8804											
ARHGEF17	9828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	73066597	73066597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	C	73066597	T	C	73066597	3	2	145	1	0	0	0	0	1	0	0	0	900	1638	57	3	3487	3	ARHGEF17	11	73066597	Missense_Mutation	SNP	T	TCGA-B0-5077-01A-01D-1462-08	8631783	73066597	61939919	37	8805											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92590423	92590423	+	Silent	SNP	G	G	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	92590423	G	A	92590423	2	1	145	1	0	0	0	0	0	0	0	1	5698	1132	40	1		1	FAT3	11	92590423	Silent	SNP	G	TCGA-B0-5077-01A-01D-1462-08	19523826	92590423	42416093	38	8806											
CWC15	51503	hgsc.bcm.edu	37	11	94699507	94699508	+	Frame_Shift_Ins	INS	-	-	T	rs34805065	bycluster;by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	94699508	-	T	94699507	7	5	145	1	0	1	1	0	0	0	0	0	4069	333	12	0	184	0	CWC15	11	94699507	Frame_Shift_Ins	INS	-	TCGA-B0-5077-01A-01D-1462-08	2109084	94699507	40307009	39	8807											
CEP57	9702	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	95564238	95564238	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	95564238	A	T	95564238	4	4	145	1	0	0	0	0	0	1	0	0	3258	131	5	5	1363	5	CEP57	11	95564238	Nonsense_Mutation	SNP	A	TCGA-B0-5077-01A-01D-1462-08	864731	95564238	39442278	40	8808	90	2									
CEP57	9702	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	95564248	95564248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	C	95564248	T	C	95564248	3	2	145	1	0	0	0	0	1	0	0	0	3258	1609	56	3	1373	3	CEP57	11	95564248	Missense_Mutation	SNP	T	TCGA-B0-5077-01A-01D-1462-08	10	95564248	39442268	41	8809	90	2									
BACE1	23621	hgsc.bcm.edu;ucsc.edu	37	11	117165880	117165894	+	In_Frame_Del	DEL	GCCTTCCCAGTTGGA	GCCTTCCCAGTTGGA	-	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	GCCTTCCCAGTTGGA	GCCTTCCCAGTTGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	-	117165894	GCCTTCCCAGTTGGA	-	117165880	7	5	145	1	0	1	0	1	0	0	0	0	1281	1306	46	0	999	0	BACE1	11	117165880	In_Frame_Del	DEL	GCCTTCCCAGTTGGA	TCGA-B0-5077-01A-01D-1462-08	21601632	117165880	17840636	42	8810											
ABCG4	64137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119029566	119029566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	119029566	G	T	119029566	3	4	145	1	0	0	0	0	1	0	0	0	70	1000	35	4	1406	4	ABCG4	11	119029566	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08	1863686	119029566	15976950	43	8811											
OVCH1	341350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	29629166	29629166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	29629166	C	T	29629166	3	4	145	1	0	0	0	0	1	0	0	0	11330	652	23	1	2024	1	OVCH1	12	29629166	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08		29629166	104222729	44	8812											
MBD6	114785	hgsc.bcm.edu;ucsc.edu	37	12	57919663	57919663	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	-	57919663	G	-	57919663	7	5	145	1	0	1	0	1	0	0	0	0	9355	1335	47	0	926	0	MBD6	12	57919663	Frame_Shift_Del	DEL	G	TCGA-B0-5077-01A-01D-1462-08	28290497	57919663	75932232	45	8813	91	3									
MBD6	114785	hgsc.bcm.edu	37	12	57919667	57919667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	57919667	G	A	57919667	3	1	145	1	0	0	0	0	1	0	0	0	9355	1000	35	2	930	2	MBD6	12	57919667	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08	4	57919667	75932228	46	8814	91	3									
MBD6	114785	broad.mit.edu;hgsc.bcm.edu	37	12	57919671	57919671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	57919671	C	T	57919671	3	4	145	1	0	0	0	0	1	0	0	0	9355	739	26	2	934	2	MBD6	12	57919671	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08	4	57919671	75932224	47	8815	91	3									
NAV3	89795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	78400326	78400326	+	Silent	SNP	C	C	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	78400326	C	G	78400326	2	3	145	1	0	0	0	0	0	0	0	1	10192	581	21	4		4	NAV3	12	78400326	Silent	SNP	C	TCGA-B0-5077-01A-01D-1462-08	20480655	78400326	55451569	48	8816											
BRCA2	675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32899270	32899270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	32899270	A	G	32899270	3	3	145	1	0	0	0	0	1	0	0	0	1501	333	12	3	384	3	BRCA2	13	32899270	Missense_Mutation	SNP	A	TCGA-B0-5077-01A-01D-1462-08		32899270	82270608	49	8817											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42137191	42137191	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	42137191	A	A	42137191	3	1	145	1	0	0	0	0	1	0	0	0	7962	1059	37	1	1925	1	JMJD7-PLA2G4B	15	42137191	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08		42137191	60394201	50	8818											
TBX6	6911	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30099894	30099894	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	30099894	A	T	30099894	3	4	145	1	0	0	0	0	1	0	0	0	15674	72	3	5	515	5	TBX6	16	30099894	Missense_Mutation	SNP	A	TCGA-B0-5077-01A-01D-1462-08		30099894	60254859	51	8819											
JPH3	57338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	87677876	87677876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	87677876	G	A	87677876	3	1	145	1	0	0	0	0	1	0	0	0	7969	1203	42	2	401	2	JPH3	16	87677876	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08	57577982	87677876	2676877	52	8820											
USP43	124739	broad.mit.edu;ucsc.edu	37	17	9559806	9559806	+	Silent	SNP	A	G	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	9559806	G	G	9559806	2	3	145	1	0	0	0	0	0	0	0	1	17086	378	14	3		3	USP43	17	9559806	Silent	SNP	A	TCGA-B0-5077-01A-01D-1462-08		9559806	71635404	53	8821											
RAI1	10743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	17696713	17696713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	17696713	G	A	17696713	3	1	145	1	0	0	0	0	1	0	0	0	13020	1029	36	2	453	2	RAI1	17	17696713	Missense_Mutation	SNP	G	TCGA-B0-5077-01A-01D-1462-08	8136907	17696713	63498497	54	8822											
FAM83G	644815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18907263	18907263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	C	18907263	T	C	18907263	3	2	145	1	0	0	0	0	1	0	0	0	5646	1580	55	3	2399	3	FAM83G	17	18907263	Missense_Mutation	SNP	T	TCGA-B0-5077-01A-01D-1462-08	1210550	18907263	62287947	55	8823											
ADAT3	113179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1913029	1913029	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	G	1913029	C	G	1913029	3	3	145	1	0	0	0	0	1	0	0	0	286	893	31	4	937	4	ADAT3	19	1913029	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08		1913029	57215954	56	8824	92	2									
ADAT3	113179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1913030	1913030	+	Silent	SNP	G	G	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	1913030	G	T	1913030	2	4	145	1	0	0	0	0	0	0	0	1	286	1074	38	4		4	ADAT3	19	1913030	Silent	SNP	G	TCGA-B0-5077-01A-01D-1462-08	1	1913030	57215953	57	8825	92	2									
SLC23A2	9962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	4880292	4880292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	T	4880292	C	T	4880292	3	4	145	1	0	0	0	0	1	0	0	0	14476	623	22	2	1609	2	SLC23A2	20	4880292	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08		4880292	58145228	58	8826											
ARSH	347527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	2951181	2951181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	2951181	C	A	2951181	3	1	145	1	0	0	0	0	1	0	0	0	993	681	24	4	1478	4	ARSH	23	2951181	Missense_Mutation	SNP	C	TCGA-B0-5077-01A-01D-1462-08		2951181	152319379	59	8827											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53231127	53231127	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	A	53231127	T	A	53231127	3	1	145	1	0	0	0	0	1	0	0	0	8142	1551	54	5	3061	5	KDM5C	23	53231127	Missense_Mutation	SNP	T	TCGA-B0-5077-01A-01D-1462-08	50279946	53231127	102039433	60	8828											
LHFPL1	340596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	111874741	111874741	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	587f2bd8-952a-4f31-98e7-7654c80b8a99	7ca07cb9-f606-4911-ad93-3a3dd65a84d2	-	111874741	A	-	111874741	7	5	145	1	0	1	0	1	0	0	0	0	8771	175	7	0	96	0	LHFPL1	23	111874741	Frame_Shift_Del	DEL	A	TCGA-B0-5077-01A-01D-1462-08	58643614	111874741	43395819	61	8829											
C1QC	714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22973841	22973841	+	Silent	SNP	C	C	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	22973841	C	A	22973841	2	1	146	1	0	0	0	0	0	0	0	1	1959	581	21	4		4	C1QC	1	22973841	Silent	SNP	C	TCGA-B0-5080-01A-01D-1501-10		22973841	226276780	1	8830											
RCC1	1104	broad.mit.edu;hgsc.bcm.edu	37	1	28862846	28862846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	28862846	T	A	28862846	3	1	146	1	0	0	0	0	1	0	0	0	13186	1696	59	5	1013	5	RCC1	1	28862846	Missense_Mutation	SNP	T	TCGA-B0-5080-01A-01D-1501-10	5889005	28862846	220387775	2	8831											
CACHD1	57685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	65047954	65047954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	65047954	A	T	65047954	3	4	146	1	0	0	0	0	1	0	0	0	2539	130	5	5	234	5	CACHD1	1	65047954	Missense_Mutation	SNP	A	TCGA-B0-5080-01A-01D-1501-10	36185108	65047954	184202667	3	8832											
DDX20	11218	broad.mit.edu;ucsc.edu	37	1	112302139	112302139	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	C	112302139	C	C	112302139	3	2	146	1	0	0	0	0	1	0	0	0	4350	1435	50	3	524	3	DDX20	1	112302139	Missense_Mutation	SNP	T	TCGA-B0-5080-01A-01D-1501-10	47254185	112302139	136948482	4	8833											
FCRL4	83417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	157566118	157566118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	157566118	C	T	157566118	3	4	146	1	0	0	0	0	1	0	0	0	5804	608	21	2	1539	2	FCRL4	1	157566118	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	45263979	157566118	91684503	5	8834											
CENPF	1063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	214802408	214802408	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	214802408	A	T	214802408	3	4	146	1	0	0	0	0	1	0	0	0	3233	14	1	5	1114	5	CENPF	1	214802408	Missense_Mutation	SNP	A	TCGA-B0-5080-01A-01D-1501-10	57236290	214802408	34448213	6	8835											
GALNT2	2590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	230398728	230398728	+	Silent	SNP	T	T	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	230398728	T	A	230398728	2	1	146	1	0	0	0	0	0	0	0	1	6220	1799	63	5		5	GALNT2	1	230398728	Silent	SNP	T	TCGA-B0-5080-01A-01D-1501-10	15596320	230398728	18851893	7	8836											
APOB	338	broad.mit.edu;ucsc.edu	37	2	21256217	21256217	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	21256217	G	G	21256217	3	3	146	1	0	0	0	0	1	0	0	0	785	826	29	4	12697	4	APOB	2	21256217	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		21256217	221943156	8	8837											
LRPPRC	10128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44201856	44201856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	44201856	G	T	44201856	3	4	146	1	0	0	0	0	1	0	0	0	8972	1252	44	4	3402	4	LRPPRC	2	44201856	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10	22945639	44201856	198997517	9	8838											
PAPOLG	64895	broad.mit.edu;ucsc.edu	37	2	60987314	60987314	+	Silent	SNP	T	C	C	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	C	60987314	C	C	60987314	2	2	146	1	0	0	0	0	0	0	0	1	11438	1742	61	3		3	PAPOLG	2	60987314	Silent	SNP	T	TCGA-B0-5080-01A-01D-1501-10	16785458	60987314	182212059	10	8839											
THSD7B	80731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	138330034	138330034	+	Silent	SNP	G	G	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	138330034	G	A	138330034	2	1	146	1	0	0	0	0	0	0	0	1	15892	1174	41	2		2	THSD7B	2	138330034	Silent	SNP	G	TCGA-B0-5080-01A-01D-1501-10	77342720	138330034	104869339	11	8840											
PMS1	5378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	190738266	190738266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	190738266	A	G	190738266	3	3	146	1	0	0	0	0	1	0	0	0	12149	362	13	3	2560	3	PMS1	2	190738266	Missense_Mutation	SNP	A	TCGA-B0-5080-01A-01D-1501-10	52408232	190738266	52461107	12	8841											
DOCK10	55619	broad.mit.edu;ucsc.edu	37	2	225637922	225637922	+	Silent	SNP	C	G	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	225637922	G	G	225637922	2	3	146	1	0	0	0	0	0	0	0	1	4687	581	21	4		4	DOCK10	2	225637922	Silent	SNP	C	TCGA-B0-5080-01A-01D-1501-10	34899656	225637922	17561451	13	8842											
STX19	415117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	93733283	93733283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	93733283	T	G	93733283	3	3	146	1	0	0	0	0	1	0	0	0	15354	1780	62	5	57	5	STX19	3	93733283	Missense_Mutation	SNP	T	TCGA-B0-5080-01A-01D-1501-10		93733283	104289147	14	8843											
ABI3BP	25890	broad.mit.edu	37	3	100595388	100595388	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	100595388	G	G	100595388	3	3	146	1	0	0	0	0	1	0	0	0	91	681	24	4	2609	4	ABI3BP	3	100595388	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	6862105	100595388	97427042	15	8844											
TP63	8626	broad.mit.edu;ucsc.edu	37	3	189608582	189608582	+	Silent	SNP	T	C	C	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	C	189608582	C	C	189608582	2	2	146	1	0	0	0	0	0	0	0	1	16404	1606	56	3		3	TP63	3	189608582	Silent	SNP	T	TCGA-B0-5080-01A-01D-1501-10	89013194	189608582	8413848	16	8845											
CENPC1	1060	broad.mit.edu;hgsc.bcm.edu	37	4	68384984	68384984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	68384984	C	T	68384984	3	4	146	1	0	0	0	0	1	0	0	0	3231	565	20	2	2319	2	CENPC1	4	68384984	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		68384984	122769292	17	8846											
WDFY3	23001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	85642627	85642627	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	85642627	A	T	85642627	3	4	146	1	0	0	0	0	1	0	0	0	17282	304	11	5	3128	5	WDFY3	4	85642627	Missense_Mutation	SNP	A	TCGA-B0-5080-01A-01D-1501-10	17257643	85642627	105511649	18	8847											
SLC45A2	51151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33951772	33951772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	33951772	C	T	33951772	3	4	146	1	0	0	0	0	1	0	0	0	14654	768	27	1	576	1	SLC45A2	5	33951772	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		33951772	146963488	19	8848											
IQGAP2	10788	hgsc.bcm.edu;ucsc.edu	37	5	75886315	75886315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	-	75886315	T	-	75886315	7	5	146	1	0	1	0	1	0	0	0	0	7822	1461	51	0	753	0	IQGAP2	5	75886315	Frame_Shift_Del	DEL	T	TCGA-B0-5080-01A-01D-1501-10	41934543	75886315	105028945	20	8849											
GPR98	84059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	89986798	89986798	+	Silent	SNP	G	G	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	89986798	G	A	89986798	2	1	146	1	0	0	0	0	0	0	0	1	6728	1219	43	2		2	GPR98	5	89986798	Silent	SNP	G	TCGA-B0-5080-01A-01D-1501-10	14100483	89986798	90928462	21	8850											
PECI	0	broad.mit.edu;ucsc.edu	37	6	4117641	4117641	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	4117641	G	G	4117641	3	3	146	1	0	0	0	0	1	0	0	0	11723	680	24	4	262	4	PECI	6	4117641	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		4117641	166997426	22	8851											
DPCR1	135656	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	30919792	30919792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	30919792	C	T	30919792	3	4	146	1	0	0	0	0	1	0	0	0	4714	594	21	2	3557	2	DPCR1	6	30919792	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	26802151	30919792	140195275	23	8852											
GPR110	266977	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46977222	46977222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	46977222	G	A	46977222	3	1	146	1	0	0	0	0	1	0	0	0	6634	1145	40	1	803	1	GPR110	6	46977222	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10	16057430	46977222	124137845	24	8853											
GLI3	2737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	42003966	42003966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	C	42003966	G	C	42003966	3	2	146	1	0	0	0	0	1	0	0	0	6446	991	35	4	41	4	GLI3	7	42003966	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10		42003966	117134697	25	8854											
GRB10	2887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	50660657	50660657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	50660657	C	T	50660657	3	4	146	1	0	0	0	0	1	0	0	0	6763	739	26	2	11	2	GRB10	7	50660657	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	8656691	50660657	108478006	26	8855											
LUC7L2	51631	broad.mit.edu;ucsc.edu	37	7	139097305	139097305	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	139097305	A	A	139097305	4	1	146	1	0	0	0	0	0	1	0	0	9090	838	29	4	818	4	LUC7L2	7	139097305	Nonsense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	88436648	139097305	20041358	27	8856											
KIF13B	23303	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	29018273	29018273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	29018273	C	T	29018273	3	4	146	1	0	0	0	0	1	0	0	0	8282	835	29	2	4211	2	KIF13B	8	29018273	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		29018273	117345749	28	8857											
PCDH15	65217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	55663098	55663098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	55663098	C	A	55663098	3	1	146	1	0	0	0	0	1	0	0	0	11518	855	30	4	4112	4	PCDH15	10	55663098	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		55663098	79871649	29	8858	93	2									
PCDH15	65217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	55663099	55663099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	55663099	C	A	55663099	3	1	146	1	0	0	0	0	1	0	0	0	11518	680	24	4	4113	4	PCDH15	10	55663099	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	1	55663099	79871648	30	8859	93	2									
SLC29A3	55315	broad.mit.edu	37	10	73121852	73121852	+	Silent	SNP	G	A	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	73121852	A	A	73121852	2	1	146	1	0	0	0	0	0	0	0	1	14549	1103	39	1		1	SLC29A3	10	73121852	Silent	SNP	G	TCGA-B0-5080-01A-01D-1501-10	17458753	73121852	62412895	31	8860											
RRP12	23223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99156039	99156039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	99156039	G	T	99156039	3	4	146	1	0	0	0	0	1	0	0	0	13699	971	34	4	3632	4	RRP12	10	99156039	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10	26034187	99156039	36378708	32	8861	94	2									
RRP12	23223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99156040	99156040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	99156040	C	T	99156040	3	4	146	1	0	0	0	0	1	0	0	0	13699	710	25	2	3633	2	RRP12	10	99156040	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	1	99156040	36378707	33	8862	94	2									
CCDC73	493860	broad.mit.edu;ucsc.edu	37	11	32697453	32697453	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	32697453	T	T	32697453	3	4	146	1	0	0	0	0	1	0	0	0	2848	1290	45	4	2739	4	CCDC73	11	32697453	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10		32697453	102309063	34	8863											
SLC22A20	440044	hgsc.bcm.edu	37	11	64988531	64988531	+	RNA	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	64988531	C	T	64988531	1	4	146	0	1	0	0	0	0	0	0	0	14464	638	22	2		2	SLC22A20	11	64988531	RNA	SNP	C	TCGA-B0-5080-01A-01D-1501-10	32291078	64988531	70017985	35	8864											
SYT12	91683	broad.mit.edu;hgsc.bcm.edu	37	11	66813240	66813240	+	Silent	SNP	G	G	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	66813240	G	T	66813240	2	4	146	1	0	0	0	0	0	0	0	1	15480	1306	46	4		4	SYT12	11	66813240	Silent	SNP	G	TCGA-B0-5080-01A-01D-1501-10	1824709	66813240	68193276	36	8865											
ACSM4	341392	hgsc.bcm.edu;ucsc.edu	37	12	7459281	7459281	+	Silent	SNP	C	C	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	7459281	C	A	7459281	2	1	146	1	0	0	0	0	0	0	0	1	186	639	23	4		4	ACSM4	12	7459281	Silent	SNP	C	TCGA-B0-5080-01A-01D-1501-10		7459281	126392614	37	8866											
IRAK4	51135	broad.mit.edu	37	12	44176279	44176279	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	C	44176279	C	C	44176279	3	2	146	1	0	0	0	0	1	0	0	0	7832	1754	61	3	1141	3	IRAK4	12	44176279	Missense_Mutation	SNP	T	TCGA-B0-5080-01A-01D-1501-10	36716998	44176279	89675616	38	8867											
USP15	9958	broad.mit.edu;hgsc.bcm.edu	37	12	62798002	62798002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	C	62798002	G	C	62798002	3	2	146	1	0	0	0	0	1	0	0	0	17058	933	33	4	2788	4	USP15	12	62798002	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10	18621723	62798002	71053893	39	8868											
USP8	9101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	50791105	50791105	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	50791105	C	G	50791105	3	3	146	1	0	0	0	0	1	0	0	0	17101	564	20	4	3251	4	USP8	15	50791105	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		50791105	51740287	40	8869											
ADAMTSL3	57188	hgsc.bcm.edu	37	15	84705613	84705614	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	84705614	-	G	84705613	7	5	146	1	0	1	1	0	0	0	0	0	276	179	7	0	4953	0	ADAMTSL3	15	84705613	Frame_Shift_Ins	INS	-	TCGA-B0-5080-01A-01D-1501-10	33914508	84705613	17825779	41	8870											
CDH5	1003	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	66430033	66430033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	66430033	A	T	66430033	3	4	146	1	0	0	0	0	1	0	0	0	3115	304	11	5	1315	5	CDH5	16	66430033	Missense_Mutation	SNP	A	TCGA-B0-5080-01A-01D-1501-10		66430033	23924720	42	8871											
PIRT	644139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10728777	10728777	+	Silent	SNP	G	G	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	10728777	G	A	10728777	2	1	146	1	0	0	0	0	0	0	0	1	11952	1074	38	1		1	PIRT	17	10728777	Silent	SNP	G	TCGA-B0-5080-01A-01D-1501-10		10728777	70466433	43	8872											
ULK2	9706	broad.mit.edu;ucsc.edu	37	17	19705159	19705159	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	19705159	T	T	19705159	3	4	146	1	0	0	0	0	1	0	0	0	16988	913	32	2	1786	2	ULK2	17	19705159	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	8976382	19705159	61490051	44	8873											
TADA2A	6871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	35804809	35804809	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	35804809	T	G	35804809	3	3	146	1	0	0	0	0	1	0	0	0	15522	1490	52	5	569	5	TADA2A	17	35804809	Missense_Mutation	SNP	T	TCGA-B0-5080-01A-01D-1501-10	16099650	35804809	45390401	45	8874											
SAMD14	201191	broad.mit.edu	37	17	48191586	48191586	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	48191586	G	G	48191586	3	3	146	1	0	0	0	0	1	0	0	0	13832	362	13	3	358	3	SAMD14	17	48191586	Missense_Mutation	SNP	A	TCGA-B0-5080-01A-01D-1501-10	12386777	48191586	33003624	46	8875											
KIF19	124602	broad.mit.edu	37	17	72342609	72342609	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	72342609	T	T	72342609	3	4	146	1	0	0	0	0	1	0	0	0	8289	991	35	4	900	4	KIF19	17	72342609	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10	24151023	72342609	8852601	47	8876											
PTBP1	5725	hgsc.bcm.edu	37	19	808433	808433	+	Silent	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	808433	C	T	808433	2	4	146	1	0	0	0	0	0	0	0	1	12735	535	19	1		1	PTBP1	19	808433	Silent	SNP	C	TCGA-B0-5080-01A-01D-1501-10		808433	58320550	48	8877											
STX10	8677	broad.mit.edu	37	19	13260325	13260325	+	Silent	SNP	T	C	C	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	C	13260325	C	C	13260325	2	2	146	1	0	0	0	0	0	0	0	1	15348	1538	54	3		3	STX10	19	13260325	Silent	SNP	T	TCGA-B0-5080-01A-01D-1501-10	12451892	13260325	45868658	49	8878											
PDE4C	5143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18328978	18328978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	18328978	G	T	18328978	3	4	146	1	0	0	0	0	1	0	0	0	11648	1252	44	4	847	4	PDE4C	19	18328978	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10	5068653	18328978	40800005	50	8879											
ZNF792	126375	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	35449369	35449369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	35449369	C	T	35449369	3	4	146	1	0	0	0	0	1	0	0	0	18176	826	29	2	512	2	ZNF792	19	35449369	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	17120391	35449369	23679614	51	8880											
HNRNPUL1	11100	broad.mit.edu;ucsc.edu	37	19	41811645	41811645	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	G	41811645	G	G	41811645	3	3	146	1	0	0	0	0	1	0	0	0	7281	681	24	4	2381	4	HNRNPUL1	19	41811645	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	6362276	41811645	17317338	52	8881											
POLD1	5424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50906786	50906786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	50906786	G	A	50906786	3	1	146	1	0	0	0	0	1	0	0	0	12197	1145	40	1	1208	1	POLD1	19	50906786	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10	9095141	50906786	8222197	53	8882											
MYBPC2	4606	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50939919	50939919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	50939919	C	T	50939919	3	4	146	1	0	0	0	0	1	0	0	0	10019	652	23	1	409	1	MYBPC2	19	50939919	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	33133	50939919	8189064	54	8883											
SIGLEC8	27181	broad.mit.edu;hgsc.bcm.edu	37	19	51958703	51958703	+	Silent	SNP	G	G	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	51958703	G	A	51958703	2	1	146	1	0	0	0	0	0	0	0	1	14327	1219	43	2		2	SIGLEC8	19	51958703	Silent	SNP	G	TCGA-B0-5080-01A-01D-1501-10	1018784	51958703	7170280	55	8884											
VN1R2	317701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53762336	53762336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	53762336	C	A	53762336	3	1	146	1	0	0	0	0	1	0	0	0	17191	709	25	4	710	4	VN1R2	19	53762336	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	1803633	53762336	5366647	56	8885											
TMEM50B	757	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34841149	34841149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	34841149	C	T	34841149	3	4	146	1	0	0	0	0	1	0	0	0	16188	478	17	2	456	2	TMEM50B	21	34841149	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		34841149	13288746	57	8886											
PRDM15	63977	broad.mit.edu	37	21	43230601	43230601	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	43230601	A	A	43230601	3	1	146	1	0	0	0	0	1	0	0	0	12466	1667	58	5	880	5	PRDM15	21	43230601	Missense_Mutation	SNP	T	TCGA-B0-5080-01A-01D-1501-10	8389452	43230601	4899294	58	8887											
TCF20	6942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42609019	42609019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	42609019	C	A	42609019	3	1	146	1	0	0	0	0	1	0	0	0	15702	826	29	4	3627	4	TCF20	22	42609019	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		42609019	8695547	59	8888											
FAM118A	55007	broad.mit.edu;ucsc.edu	37	22	45726594	45726594	+	Silent	SNP	T	C	C	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	C	45726594	C	C	45726594	2	2	146	1	0	0	0	0	0	0	0	1	5415	1538	54	3		3	FAM118A	22	45726594	Silent	SNP	T	TCGA-B0-5080-01A-01D-1501-10	3117575	45726594	5577972	60	8889	95	2									
FAM118A	55007	broad.mit.edu;ucsc.edu	37	22	45726595	45726595	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	45726595	T	T	45726595	4	4	146	1	0	0	0	0	0	1	0	0	5415	827	29	2	648	2	FAM118A	22	45726595	Nonsense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10	1	45726595	5577971	61	8890	95	2									
ZCCHC5	203430	broad.mit.edu;ucsc.edu	37	X	77913714	77913714	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	77913714	A	A	77913714	3	1	146	1	0	0	0	0	1	0	0	0	17603	826	29	4	1227	4	ZCCHC5	23	77913714	Missense_Mutation	SNP	C	TCGA-B0-5080-01A-01D-1501-10		77913714	77356846	62	8891											
IGSF1	3547	broad.mit.edu;ucsc.edu	37	X	130409967	130409967	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	C	130409967	C	C	130409967	3	2	146	1	0	0	0	0	1	0	0	0	7603	1406	49	3	1170	3	IGSF1	23	130409967	Missense_Mutation	SNP	T	TCGA-B0-5080-01A-01D-1501-10	52496253	130409967	24860593	63	8892											
GPR101	83550	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	136112591	136112591	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	T	136112591	A	T	136112591	3	4	146	1	0	0	0	0	1	0	0	0	6629	420	15	5	286	5	GPR101	23	136112591	Missense_Mutation	SNP	A	TCGA-B0-5080-01A-01D-1501-10	5702624	136112591	19157969	64	8893											
HCFC1	3054	broad.mit.edu	37	X	153222975	153222975	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5080-01A-01D-1501-10	TCGA-B0-5080-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9adf0a63-1d5c-403a-9e78-cb9d62a249a4	b879cfef-694b-4868-a523-0e9e27486cd7	A	153222975	A	A	153222975	3	1	146	1	0	0	0	0	1	0	0	0	6998	1203	42	2	4020	2	HCFC1	23	153222975	Missense_Mutation	SNP	G	TCGA-B0-5080-01A-01D-1501-10	17110384	153222975	2047585	65	8894											
TEKT2	27285	broad.mit.edu	37	1	36553613	36553613	+	Silent	SNP	G	T	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	36553613	T	T	36553613	2	4	147	1	0	0	0	0	0	0	0	1	15765	1306	46	4		4	TEKT2	1	36553613	Silent	SNP	G	TCGA-B0-5081-01A-01D-1462-08		36553613	212697008	1	8895											
CD34	947	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	208062095	208062095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	208062095	C	A	208062095	3	1	147	1	0	0	0	0	1	0	0	0	3008	739	26	4	280	4	CD34	1	208062095	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08	171508482	208062095	41188526	2	8896											
USH2A	7399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	216405369	216405369	+	Silent	SNP	T	T	C	rs138484134	by1000genomes	TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	C	216405369	T	C	216405369	2	2	147	1	0	0	0	0	0	0	0	1	17048	1606	56	3		3	USH2A	1	216405369	Silent	SNP	T	TCGA-B0-5081-01A-01D-1462-08	8343274	216405369	32845252	3	8897											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179395676	179395676	+	Silent	SNP	C	C	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	179395676	C	T	179395676	2	4	147	1	0	0	0	0	0	0	0	1	16747	622	22	2		2	TTN	2	179395676	Silent	SNP	C	TCGA-B0-5081-01A-01D-1462-08		179395676	63803697	4	8898											
AQP12A	375318	broad.mit.edu;hgsc.bcm.edu	37	2	241631447	241631447	+	Silent	SNP	G	G	C	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	C	241631447	G	C	241631447	2	2	147	1	0	0	0	0	0	0	0	1	824	1219	43	4		4	AQP12A	2	241631447	Silent	SNP	G	TCGA-B0-5081-01A-01D-1462-08	62235771	241631447	1567926	5	8899											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191513	10191513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	C	10191513	T	C	10191513	3	2	147	1	0	0	0	0	1	0	0	0	17174	1522	53	3	516	3	VHL	3	10191513	Missense_Mutation	SNP	T	TCGA-B0-5081-01A-01D-1462-08		10191513	187830917	6	8900											
UBE2E2	7325	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	23541185	23541185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	C	23541185	T	C	23541185	3	2	147	1	0	0	0	0	1	0	0	0	16865	1841	64	3	324	3	UBE2E2	3	23541185	Missense_Mutation	SNP	T	TCGA-B0-5081-01A-01D-1462-08	13349672	23541185	174481245	7	8901											
SUSD5	26032	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33194429	33194429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	33194429	G	T	33194429	3	4	147	1	0	0	0	0	1	0	0	0	15423	1136	40	4	198	4	SUSD5	3	33194429	Missense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08	9653244	33194429	164828001	8	8902											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu	37	3	47163945	47163945	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	47163945	G	T	47163945	4	4	147	1	0	0	0	0	0	1	0	0	14144	1311	46	4	5589	4	SETD2	3	47163945	Nonsense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08	13969516	47163945	150858485	9	8903											
CCDC51	79714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48475152	48475152	+	Silent	SNP	A	A	G	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	G	48475152	A	G	48475152	2	3	147	1	0	0	0	0	0	0	0	1	2823	69	3	3		3	CCDC51	3	48475152	Silent	SNP	A	TCGA-B0-5081-01A-01D-1462-08	1311207	48475152	149547278	10	8904											
CCDC80	151887	broad.mit.edu;ucsc.edu	37	3	112357811	112357811	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	C	112357811	C	C	112357811	3	2	147	1	0	0	0	0	1	0	0	0	2856	1252	44	4	1938	4	CCDC80	3	112357811	Missense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08	63882659	112357811	85664619	11	8905											
COL6A6	131873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130300741	130300741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	130300741	G	A	130300741	3	1	147	1	0	0	0	0	1	0	0	0	3705	1058	37	1	3914	1	COL6A6	3	130300741	Missense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08	17942930	130300741	67721689	12	8906											
PYDC2	152138	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	191178998	191178998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	G	191178998	A	G	191178998	3	3	147	1	0	0	0	0	1	0	0	0	12872	304	11	3	49	3	PYDC2	3	191178998	Missense_Mutation	SNP	A	TCGA-B0-5081-01A-01D-1462-08	60878257	191178998	6843432	13	8907											
POLN	353497	broad.mit.edu	37	4	2073957	2073957	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	2073957	A	A	2073957	3	1	147	1	0	0	0	0	1	0	0	0	12214	623	22	4	119	4	POLN	4	2073957	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08		2073957	189080319	14	8908											
C4orf41	0	broad.mit.edu;ucsc.edu	37	4	184600619	184600619	+	Silent	SNP	T	C	C	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	C	184600619	C	C	184600619	2	2	147	1	0	0	0	0	0	0	0	1	2272	1461	51	3		3	C4orf41	4	184600619	Silent	SNP	T	TCGA-B0-5081-01A-01D-1462-08	182526662	184600619	6553657	15	8909											
IRX2	153572	broad.mit.edu	37	5	2748714	2748714	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	2748714	T	T	2748714	3	4	147	1	0	0	0	0	1	0	0	0	7851	304	11	5	315	5	IRX2	5	2748714	Missense_Mutation	SNP	A	TCGA-B0-5081-01A-01D-1462-08		2748714	178166546	16	8910											
PELO	53918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	52096856	52096856	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	G	52096856	C	G	52096856	3	3	147	1	0	0	0	0	1	0	0	0	11731	623	22	4	630	4	PELO	5	52096856	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08	49348142	52096856	128818404	17	8911											
IL6ST	3572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	55247810	55247810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	55247810	C	A	55247810	3	1	147	1	0	0	0	0	1	0	0	0	7710	855	30	4	1130	4	IL6ST	5	55247810	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08	3150954	55247810	125667450	18	8912											
TTC37	9652	broad.mit.edu;hgsc.bcm.edu	37	5	94803695	94803695	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	C	94803695	T	C	94803695	5	2	147	1	0	0	0	0	0	0	1	0	16717	1594	55	3	207	3	TTC37	5	94803695	Splice_Site	SNP	T	TCGA-B0-5081-01A-01D-1462-08	39555885	94803695	86111565	19	8913											
KLHL3	26249	broad.mit.edu;ucsc.edu	37	5	136974757	136974757	+	Silent	SNP	G	A	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	136974757	A	A	136974757	2	1	147	1	0	0	0	0	0	0	0	1	8390	1136	40	1		1	KLHL3	5	136974757	Silent	SNP	G	TCGA-B0-5081-01A-01D-1462-08	42171062	136974757	43940503	20	8914											
SENP6	26054	hgsc.bcm.edu	37	6	76369015	76369015	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	76369015	A	T	76369015	3	4	147	1	0	0	0	0	1	0	0	0	14063	69	3	5	618	5	SENP6	6	76369015	Missense_Mutation	SNP	A	TCGA-B0-5081-01A-01D-1462-08		76369015	94746052	21	8915											
CCR6	1235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	167550763	167550763	+	Missense_Mutation	SNP	G	G	A	rs113115632	alternate_allele	TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	167550763	G	A	167550763	3	1	147	1	0	0	0	0	1	0	0	0	2947	1319	46	2	1051	2	CCR6	6	167550763	Missense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08	91181748	167550763	3564304	22	8916											
CARD11	84433	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	2953040	2953040	+	Missense_Mutation	SNP	C	C	G	rs141751925	by1000genomes;alternate_allele	TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	G	2953040	C	G	2953040	3	3	147	1	0	0	0	0	1	0	0	0	2647	768	27	4	580	4	CARD11	7	2953040	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08		2953040	156185623	23	8917											
COL15A1	1306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	101824283	101824283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	101824283	C	A	101824283	3	1	147	1	0	0	0	0	1	0	0	0	3674	796	28	4	3579	4	COL15A1	9	101824283	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08		101824283	39389148	24	8918	96	2									
COL15A1	1306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	101824284	101824284	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	101824284	T	A	101824284	3	1	147	1	0	0	0	0	1	0	0	0	3674	1580	55	5	3580	5	COL15A1	9	101824284	Missense_Mutation	SNP	T	TCGA-B0-5081-01A-01D-1462-08	1	101824284	39389147	25	8919	96	2									
SVEP1	79987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	113265449	113265449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	113265449	C	A	113265449	3	1	147	1	0	0	0	0	1	0	0	0	15432	478	17	4	9535	4	SVEP1	9	113265449	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08	11441165	113265449	27947982	26	8920											
CACNA1B	774	broad.mit.edu;hgsc.bcm.edu	37	9	141015984	141015984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	141015984	G	A	141015984	3	1	147	1	0	0	0	0	1	0	0	0	2541	1116	39	1	6735	1	CACNA1B	9	141015984	Missense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08	27750535	141015984	197447	27	8921											
KIAA1462	57608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	30316404	30316404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	30316404	C	A	30316404	3	1	147	1	0	0	0	0	1	0	0	0	8241	796	28	4	1414	4	KIAA1462	10	30316404	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08		30316404	105218343	28	8922											
USP47	55031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	11964635	11964635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	11964635	G	A	11964635	3	1	147	1	0	0	0	0	1	0	0	0	17090	1291	45	2	2937	2	USP47	11	11964635	Missense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08		11964635	123041881	29	8923											
OR8J3	81168	broad.mit.edu	37	11	55904779	55904779	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	55904779	A	A	55904779	3	1	147	1	0	0	0	0	1	0	0	0	11249	652	23	4	533	4	OR8J3	11	55904779	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08	43940144	55904779	79101737	30	8924											
MRGPRD	116512	broad.mit.edu	37	11	68748065	68748065	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	C	68748065	C	C	68748065	3	2	147	1	0	0	0	0	1	0	0	0	9770	1406	49	3	577	3	MRGPRD	11	68748065	Missense_Mutation	SNP	T	TCGA-B0-5081-01A-01D-1462-08	12843286	68748065	66258451	31	8925											
OR8B8	26493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124310503	124310503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	124310503	G	T	124310503	3	4	147	1	0	0	0	0	1	0	0	0	11237	1377	48	4	459	4	OR8B8	11	124310503	Missense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08	55562438	124310503	10696013	32	8926											
CSAD	51380	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53566220	53566220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	53566220	C	T	53566220	3	4	147	1	0	0	0	0	1	0	0	0	3927	521	18	2	1275	2	CSAD	12	53566220	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08		53566220	80285675	33	8927											
MMAB	326625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	110006594	110006594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	110006594	C	T	110006594	3	4	147	1	0	0	0	0	1	0	0	0	9647	835	29	2	509	2	MMAB	12	110006594	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08	56440374	110006594	23845301	34	8928											
NIPA1	123606	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	23048907	23048907	+	Silent	SNP	C	C	G	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	G	23048907	C	G	23048907	2	3	147	1	0	0	0	0	0	0	0	1	10429	842	30	4		4	NIPA1	15	23048907	Silent	SNP	C	TCGA-B0-5081-01A-01D-1462-08		23048907	79482485	35	8929											
PLA2G4E	123745	hgsc.bcm.edu	37	15	42293414	42293414	+	Missense_Mutation	SNP	C	C	T	rs189961279	by1000genomes	TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	42293414	C	T	42293414	3	4	147	1	0	0	0	0	1	0	0	0	12012	884	31	1	2048	1	PLA2G4E	15	42293414	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08	19244507	42293414	60237978	36	8930											
RHOT2	89941	broad.mit.edu	37	16	720686	720686	+	Silent	SNP	G	A	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	720686	A	A	720686	2	1	147	1	0	0	0	0	0	0	0	1	13357	1132	40	1		1	RHOT2	16	720686	Silent	SNP	G	TCGA-B0-5081-01A-01D-1462-08		720686	89634067	37	8931											
NPW	283869	broad.mit.edu	37	16	2070178	2070178	+	Silent	SNP	C	A	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	2070178	A	A	2070178	2	1	147	1	0	0	0	0	0	0	0	1	10613	668	24	4		4	NPW	16	2070178	Silent	SNP	C	TCGA-B0-5081-01A-01D-1462-08	1349492	2070178	88284575	38	8932											
ZNF668	79759	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31073518	31073518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	31073518	C	T	31073518	3	4	147	1	0	0	0	0	1	0	0	0	18087	768	27	1	1132	1	ZNF668	16	31073518	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08	29003340	31073518	59281235	39	8933											
EDC4	23644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67909957	67909957	+	Silent	SNP	T	T	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	67909957	T	A	67909957	2	1	147	1	0	0	0	0	0	0	0	1	4910	1567	55	5		5	EDC4	16	67909957	Silent	SNP	T	TCGA-B0-5081-01A-01D-1462-08	36836439	67909957	22444796	40	8934											
POLR2A	5430	hgsc.bcm.edu	37	17	7416613	7416613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	7416613	G	A	7416613	3	1	147	1	0	0	0	0	1	0	0	0	12221	971	34	2	5144	2	POLR2A	17	7416613	Missense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08		7416613	73778597	41	8935											
LLGL1	3996	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18137246	18137246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	18137246	C	T	18137246	3	4	147	1	0	0	0	0	1	0	0	0	8840	768	27	1	565	1	LLGL1	17	18137246	Missense_Mutation	SNP	C	TCGA-B0-5081-01A-01D-1462-08	10720633	18137246	63057964	42	8936											
C18orf34	0	broad.mit.edu;hgsc.bcm.edu	37	18	30795588	30795588	+	Silent	SNP	T	T	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	30795588	T	A	30795588	2	1	147	1	0	0	0	0	0	0	0	1	1904	1744	61	5		5	C18orf34	18	30795588	Silent	SNP	T	TCGA-B0-5081-01A-01D-1462-08		30795588	47281660	43	8937											
IDH3B	3420	broad.mit.edu	37	20	2644813	2644813	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	A	2644813	A	A	2644813	3	1	147	1	0	0	0	0	1	0	0	0	7504	1116	39	1	1343	1	IDH3B	20	2644813	Missense_Mutation	SNP	G	TCGA-B0-5081-01A-01D-1462-08		2644813	60380707	44	8938											
ARSF	416	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	2990179	2990179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	2990179	A	T	2990179	3	4	147	1	0	0	0	0	1	0	0	0	991	449	16	5	130	5	ARSF	23	2990179	Missense_Mutation	SNP	A	TCGA-B0-5081-01A-01D-1462-08		2990179	152280381	45	8939											
DMD	1756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	31187596	31187596	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	T	31187596	A	T	31187596	3	4	147	1	0	0	0	0	1	0	0	0	4582	420	15	5	650	5	DMD	23	31187596	Missense_Mutation	SNP	A	TCGA-B0-5081-01A-01D-1462-08	28197417	31187596	124082964	46	8940											
NOX1	27035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	100117451	100117451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5081-01A-01D-1462-08	TCGA-B0-5081-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	71a9d096-0e27-4585-b54a-48214d83cd6c	5d95ccc5-6f79-404a-b3a7-b726c7f56d30	C	100117451	A	C	100117451	3	2	147	1	0	0	0	0	1	0	0	0	10563	14	1	5	1125	5	NOX1	23	100117451	Missense_Mutation	SNP	A	TCGA-B0-5081-01A-01D-1462-08	68929855	100117451	55153109	47	8941											
VPS13D	55187	broad.mit.edu	37	1	12381877	12381877	+	Silent	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	12381877	C	T	12381877	2	4	148	1	0	0	0	0	0	0	0	1	17204	747	26	2		2	VPS13D	1	12381877	Silent	SNP	C	TCGA-B0-5083-01A-02D-1421-08		12381877	236868744	1	8942											
CNR2	1269	broad.mit.edu	37	1	24202093	24202093	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	24202093	C	A	24202093	3	1	148	1	0	0	0	0	1	0	0	0	3634	624	22	4	1071	4	CNR2	1	24202093	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	11820216	24202093	225048528	2	8943											
SPAG17	200162	broad.mit.edu	37	1	118624114	118624114	+	Silent	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	118624114	G	A	118624114	2	1	148	1	0	0	0	0	0	0	0	1	14992	1252	44	2		2	SPAG17	1	118624114	Silent	SNP	G	TCGA-B0-5083-01A-02D-1421-08	94422021	118624114	130626507	3	8944											
LCE1B	353132	broad.mit.edu	37	1	152785009	152785009	+	Silent	SNP	C	C	T	rs151038984		TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	152785009	C	T	152785009	2	4	148	1	0	0	0	0	0	0	0	1	8667	747	26	2		2	LCE1B	1	152785009	Silent	SNP	C	TCGA-B0-5083-01A-02D-1421-08	34160895	152785009	96465612	4	8945											
PPOX	5498	broad.mit.edu	37	1	161140729	161140729	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	161140729	G	A	161140729	4	1	148	1	0	0	0	0	0	1	0	0	12358	1212	42	2	1323	2	PPOX	1	161140729	Nonsense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	8355720	161140729	88109892	5	8946											
GPR52	9293	broad.mit.edu	37	1	174417939	174417939	+	Silent	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	174417939	C	T	174417939	2	4	148	1	0	0	0	0	0	0	0	1	6705	747	26	2		2	GPR52	1	174417939	Silent	SNP	C	TCGA-B0-5083-01A-02D-1421-08	13277210	174417939	74832682	6	8947											
IL1R2	7850	broad.mit.edu	37	2	102636166	102636166	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	102636166	G	A	102636166	3	1	148	1	0	0	0	0	1	0	0	0	7666	1145	40	1	594	1	IL1R2	2	102636166	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08		102636166	140563207	7	8948											
WDR33	55339	broad.mit.edu	37	2	128471384	128471384	+	Silent	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	128471384	G	A	128471384	2	1	148	1	0	0	0	0	0	0	0	1	17299	1252	44	2		2	WDR33	2	128471384	Silent	SNP	G	TCGA-B0-5083-01A-02D-1421-08	25835218	128471384	114727989	8	8949											
ARPP21	10777	broad.mit.edu	37	3	35763134	35763134	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	35763134	C	T	35763134	4	4	148	1	0	0	0	0	0	1	0	0	978	876	31	1	1092	1	ARPP21	3	35763134	Nonsense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08		35763134	162259296	9	8950											
PTPN23	25930	broad.mit.edu	37	3	47452810	47452810	+	Silent	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	47452810	G	A	47452810	2	1	148	1	0	0	0	0	0	0	0	1	12801	1310	46	2		2	PTPN23	3	47452810	Silent	SNP	G	TCGA-B0-5083-01A-02D-1421-08	11689676	47452810	150569620	10	8951											
ATR	545	broad.mit.edu	37	3	142275326	142275326	+	Silent	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	142275326	G	A	142275326	2	1	148	1	0	0	0	0	0	0	0	1	1204	1219	43	2		2	ATR	3	142275326	Silent	SNP	G	TCGA-B0-5083-01A-02D-1421-08	94822516	142275326	55747104	11	8952											
MUC4	4585	broad.mit.edu	37	3	195516104	195516104	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	195516104	C	T	195516104	3	4	148	1	0	0	0	0	1	0	0	0	9985	603	21	2		2	MUC4	3	195516104	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	53240778	195516104	2506326	12	8953											
WHSC1	7468	broad.mit.edu	37	4	1954982	1954982	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	C	1954982	G	C	1954982	3	2	148	1	0	0	0	0	1	0	0	0	17374	1218	42	4		4	WHSC1	4	1954982	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08		1954982	189199294	13	8954	97	2									
WHSC1	7468	broad.mit.edu	37	4	1954983	1954983	+	Silent	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	1954983	C	T	1954983	2	4	148	1	0	0	0	0	0	0	0	1	17374	812	28	2		2	WHSC1	4	1954983	Silent	SNP	C	TCGA-B0-5083-01A-02D-1421-08	1	1954983	189199293	14	8955	97	2									
SEL1L3	23231	broad.mit.edu	37	4	25780777	25780777	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	25780777	C	T	25780777	3	4	148	1	0	0	0	0	1	0	0	0	14025	864	30	2	928	2	SEL1L3	4	25780777	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	23825794	25780777	165373499	15	8956											
ANK2	287	broad.mit.edu	37	4	114278292	114278292	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	114278292	C	A	114278292	3	1	148	1	0	0	0	0	1	0	0	0	621	623	22	4	8733	4	ANK2	4	114278292	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	88497515	114278292	76875984	16	8957											
TRIM23	373	broad.mit.edu	37	5	64920038	64920038	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	64920038	C	T	64920038	3	4	148	1	0	0	0	0	1	0	0	0	16509	623	22	2	1771	2	TRIM23	5	64920038	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08		64920038	115995222	17	8958											
PCDHB4	56131	broad.mit.edu	37	5	140501914	140501914	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	140501914	C	T	140501914	3	4	148	1	0	0	0	0	1	0	0	0	11551	739	26	2	336	2	PCDHB4	5	140501914	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	75581876	140501914	40413346	18	8959											
PCDHGB4	8641	broad.mit.edu	37	5	140769744	140769744	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	G	140769744	C	G	140769744	3	3	148	1	0	0	0	0	1	0	0	0	11572	680	24	4	2295	4	PCDHGB4	5	140769744	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	267830	140769744	40145516	19	8960											
SH3TC2	79628	broad.mit.edu	37	5	148427438	148427438	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	148427438	C	T	148427438	3	4	148	1	0	0	0	0	1	0	0	0	14275	768	27	1	3660	1	SH3TC2	5	148427438	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	7657694	148427438	32487822	20	8961											
FYN	2534	broad.mit.edu	37	6	112015631	112015631	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	112015631	G	A	112015631	3	1	148	1	0	0	0	0	1	0	0	0	6133	971	34	2	405	2	FYN	6	112015631	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08		112015631	59099436	21	8962											
RFX6	222546	broad.mit.edu	37	6	117248669	117248669	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	117248669	C	T	117248669	4	4	148	1	0	0	0	0	0	1	0	0	13280	595	21	2	2431	2	RFX6	6	117248669	Nonsense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	5233038	117248669	53866398	22	8963											
ABCA13	154664	broad.mit.edu	37	7	48259051	48259051	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	C	48259051	G	C	48259051	3	2	148	1	0	0	0	0	1	0	0	0	31	1174	41	4	231	4	ABCA13	7	48259051	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08		48259051	110879612	23	8964											
ZNF479	90827	broad.mit.edu	37	7	57187725	57187725	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	57187725	G	T	57187725	3	4	148	1	0	0	0	0	1	0	0	0	17945	1377	48	4	181	4	ZNF479	7	57187725	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	8928674	57187725	101950938	24	8965											
PRKDC	5591	broad.mit.edu	37	8	48839848	48839848	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	G	48839848	T	G	48839848	3	3	148	1	0	0	0	0	1	0	0	0	12531	1490	52	5	10324	5	PRKDC	8	48839848	Missense_Mutation	SNP	T	TCGA-B0-5083-01A-02D-1421-08		48839848	97524174	25	8966											
SULF1	23213	broad.mit.edu	37	8	70536394	70536394	+	Silent	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	70536394	C	T	70536394	2	4	148	1	0	0	0	0	0	0	0	1	15382	535	19	1		1	SULF1	8	70536394	Silent	SNP	C	TCGA-B0-5083-01A-02D-1421-08	21696546	70536394	75827628	26	8967											
DHTKD1	55526	broad.mit.edu	37	10	12160774	12160774	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	12160774	G	A	12160774	3	1	148	1	0	0	0	0	1	0	0	0	4502	1203	42	2	2487	2	DHTKD1	10	12160774	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08		12160774	123373973	27	8968											
C10orf54	64115	broad.mit.edu	37	10	73511020	73511020	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	C	73511020	T	C	73511020	3	2	148	1	0	0	0	0	1	0	0	0	1609	1551	54	3	13	3	C10orf54	10	73511020	Missense_Mutation	SNP	T	TCGA-B0-5083-01A-02D-1421-08	61350246	73511020	62023727	28	8969											
C10orf120	399814	broad.mit.edu	37	10	124457994	124457994	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	124457994	C	T	124457994	3	4	148	1	0	0	0	0	1	0	0	0	1592	739	26	2	748	2	C10orf120	10	124457994	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	50946974	124457994	11076753	29	8970											
DPYSL4	10570	broad.mit.edu	37	10	134016279	134016279	+	Missense_Mutation	SNP	C	C	T	rs143213280		TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	134016279	C	T	134016279	3	4	148	1	0	0	0	0	1	0	0	0	4751	875	31	1	1457	1	DPYSL4	10	134016279	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	9558285	134016279	1518468	30	8971											
PSMD13	5719	broad.mit.edu	37	11	250865	250865	+	Splice_Site	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	250865	G	A	250865	5	1	148	1	0	0	0	0	0	0	1	0	12706	1014	35	2	956	2	PSMD13	11	250865	Splice_Site	SNP	G	TCGA-B0-5083-01A-02D-1421-08		250865	134755651	31	8972											
TRIM6	117854	broad.mit.edu	37	11	5626669	5626669	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	C	5626669	G	C	5626669	3	2	148	1	0	0	0	0	1	0	0	0	16545	1175	41	4	720	4	TRIM6	11	5626669	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	5375804	5626669	129379847	32	8973											
RAG2	5897	broad.mit.edu	37	11	36614565	36614565	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	36614565	C	T	36614565	3	4	148	1	0	0	0	0	1	0	0	0	13018	478	17	2	433	2	RAG2	11	36614565	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	30987896	36614565	98391951	33	8974											
DTX4	23220	broad.mit.edu	37	11	58949292	58949292	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	58949292	G	A	58949292	3	1	148	1	0	0	0	0	1	0	0	0	4799	1058	37	1	298	1	DTX4	11	58949292	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	22334727	58949292	76057224	34	8975											
ROM1	6094	broad.mit.edu	37	11	62381766	62381778	+	Frame_Shift_Del	DEL	TGATGGGGTCCCT	TGATGGGGTCCCT	-			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	-	62381778	TGATGGGGTCCCT	-	62381766	7	5	148	1	0	1	0	1	0	0	0	0	13534	1567	55	0	633	0	ROM1	11	62381766	Frame_Shift_Del	DEL	TGATGGGGTCCCT	TCGA-B0-5083-01A-02D-1421-08	3432474	62381766	72624750	35	8976											
SUV420H1	51111	broad.mit.edu	37	11	67926348	67926348	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	67926348	G	A	67926348	3	1	148	1	0	0	0	0	1	0	0	0	15426	1203	42	2	1196	2	SUV420H1	11	67926348	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	5544582	67926348	67080168	36	8977											
CCDC89	220388	broad.mit.edu	37	11	85396245	85396245	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	85396245	G	A	85396245	3	1	148	1	0	0	0	0	1	0	0	0	2868	1087	38	1	199	1	CCDC89	11	85396245	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	17469897	85396245	49610271	37	8978											
A2M	2	broad.mit.edu	37	12	9248274	9248274	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	C	9248274	T	C	9248274	3	2	148	1	0	0	0	0	1	0	0	0	4	1609	56	3	2634	3	A2M	12	9248274	Missense_Mutation	SNP	T	TCGA-B0-5083-01A-02D-1421-08		9248274	124603621	38	8979											
PRICKLE1	144165	broad.mit.edu	37	12	42853645	42853645	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	C	42853645	T	C	42853645	3	2	148	1	0	0	0	0	1	0	0	0	12496	1609	56	3	37	3	PRICKLE1	12	42853645	Missense_Mutation	SNP	T	TCGA-B0-5083-01A-02D-1421-08	33605371	42853645	90998250	39	8980											
LGR5	8549	broad.mit.edu	37	12	71971760	71971760	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	71971760	C	T	71971760	3	4	148	1	0	0	0	0	1	0	0	0	8764	739	26	2	1318	2	LGR5	12	71971760	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	29118115	71971760	61880135	40	8981											
ZMYM2	7750	broad.mit.edu	37	13	20577188	20577188	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	20577188	G	A	20577188	3	1	148	1	0	0	0	0	1	0	0	0	17712	1174	41	2	1052	2	ZMYM2	13	20577188	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08		20577188	94592690	41	8982											
OXA1L	5018	broad.mit.edu	37	14	23239116	23239116	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	23239116	G	A	23239116	3	1	148	1	0	0	0	0	1	0	0	0	11335	1203	42	2	750	2	OXA1L	14	23239116	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08		23239116	84110424	42	8983											
TGM1	7051	broad.mit.edu	37	14	24727524	24727524	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	-	24727524	C	-	24727524	7	5	148	1	0	1	0	1	0	0	0	0	15841	507	18	0	1112	0	TGM1	14	24727524	Frame_Shift_Del	DEL	C	TCGA-B0-5083-01A-02D-1421-08	1488408	24727524	82622016	43	8984											
DDHD1	80821	broad.mit.edu	37	14	53522428	53522428	+	Missense_Mutation	SNP	C	C	T	rs143188831		TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	53522428	C	T	53522428	3	4	148	1	0	0	0	0	1	0	0	0	4328	768	27	1	523	1	DDHD1	14	53522428	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	28794904	53522428	53827112	44	8985											
SGPP1	81537	broad.mit.edu	37	14	64153040	64153040	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	G	64153040	A	G	64153040	3	3	148	1	0	0	0	0	1	0	0	0	14232	304	11	3	220	3	SGPP1	14	64153040	Missense_Mutation	SNP	A	TCGA-B0-5083-01A-02D-1421-08	10630612	64153040	43196500	45	8986											
PGF	5228	broad.mit.edu	37	14	75420625	75420625	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	75420625	C	T	75420625	3	4	148	1	0	0	0	0	1	0	0	0	11795	652	23	1	436	1	PGF	14	75420625	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	11267585	75420625	31928915	46	8987											
FLRT2	23768	broad.mit.edu	37	14	86089264	86089264	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	86089264	G	A	86089264	3	1	148	1	0	0	0	0	1	0	0	0	5946	1087	38	1	1408	1	FLRT2	14	86089264	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	10668639	86089264	21260276	47	8988											
EML1	2009	broad.mit.edu	37	14	100380607	100380607	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	100380607	G	A	100380607	3	1	148	1	0	0	0	0	1	0	0	0	5098	1203	42	2	1701	2	EML1	14	100380607	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	14291343	100380607	6968933	48	8989											
HERC2	8924	broad.mit.edu	37	15	28386944	28386944	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	28386944	C	A	28386944	3	1	148	1	0	0	0	0	1	0	0	0	7065	478	17	4	2823	4	HERC2	15	28386944	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08		28386944	74144448	49	8990											
ZG16B	124220	broad.mit.edu	37	16	2882103	2882103	+	Silent	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	2882103	G	A	2882103	2	1	148	1	0	0	0	0	0	0	0	1	17684	1045	37	1		1	ZG16B	16	2882103	Silent	SNP	G	TCGA-B0-5083-01A-02D-1421-08		2882103	87472650	50	8991											
IRX5	10265	broad.mit.edu	37	16	54966805	54966805	+	Silent	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	54966805	C	T	54966805	2	4	148	1	0	0	0	0	0	0	0	1	7854	726	26	2		2	IRX5	16	54966805	Silent	SNP	C	TCGA-B0-5083-01A-02D-1421-08	52084702	54966805	35387948	51	8992											
TMED6	146456	broad.mit.edu	37	16	69377539	69377539	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	69377539	C	T	69377539	3	4	148	1	0	0	0	0	1	0	0	0	16020	739	26	2	232	2	TMED6	16	69377539	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	14410734	69377539	20977214	52	8993											
SLC6A4	6532	broad.mit.edu	37	17	28545934	28545934	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	28545934	G	A	28545934	3	1	148	1	0	0	0	0	1	0	0	0	14699	1232	43	2	1581	2	SLC6A4	17	28545934	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08		28545934	52649276	53	8994											
RHBDL3	162494	broad.mit.edu	37	17	30643271	30643271	+	Silent	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	30643271	C	T	30643271	2	4	148	1	0	0	0	0	0	0	0	1	13336	747	26	2		2	RHBDL3	17	30643271	Silent	SNP	C	TCGA-B0-5083-01A-02D-1421-08	2097337	30643271	50551939	54	8995											
YPEL2	388403	broad.mit.edu	37	17	57466804	57466804	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	57466804	G	A	57466804	3	1	148	1	0	0	0	0	1	0	0	0	17502	1319	46	2	255	2	YPEL2	17	57466804	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	26823533	57466804	23728406	55	8996											
UHRF1	29128	broad.mit.edu	37	19	4933983	4933984	+	RNA	DEL	GC	GC	-	rs8108532		TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	-	4933984	GC	-	4933983	6	5	148	0	1	1	0	1	0	0	0	0	16979	1334	46	0		0	UHRF1	19	4933983	RNA	DEL	GC	TCGA-B0-5083-01A-02D-1421-08		4933983	54195000	56	8997											
RYR1	6261	broad.mit.edu	37	19	38946385	38946385	+	Silent	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	38946385	C	T	38946385	2	4	148	1	0	0	0	0	0	0	0	1	13781	506	18	2		2	RYR1	19	38946385	Silent	SNP	C	TCGA-B0-5083-01A-02D-1421-08	34012402	38946385	20182598	57	8998											
ZNF28	7576	broad.mit.edu	37	19	53303044	53303044	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	53303044	T	A	53303044	3	1	148	1	0	0	0	0	1	0	0	0	17825	1464	51	5	106	5	ZNF28	19	53303044	Missense_Mutation	SNP	T	TCGA-B0-5083-01A-02D-1421-08	14356659	53303044	5825939	58	8999											
ZNF28	7576	broad.mit.edu	37	19	53304169	53304169	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	53304169	C	T	53304169	3	4	148	1	0	0	0	0	1	0	0	0	17825	768	27	1	1231	1	ZNF28	19	53304169	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	1125	53304169	5824814	59	9000											
LILRB5	10990	broad.mit.edu	37	19	54754843	54754843	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	G	54754843	A	G	54754843	3	3	148	1	0	0	0	0	1	0	0	0	8801	319	11	3		3	LILRB5	19	54754843	Missense_Mutation	SNP	A	TCGA-B0-5083-01A-02D-1421-08	1450674	54754843	4374140	60	9001											
NLRP4	147945	broad.mit.edu	37	19	56370138	56370138	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	56370138	C	T	56370138	3	4	148	1	0	0	0	0	1	0	0	0	10486	739	26	2	1385	2	NLRP4	19	56370138	Missense_Mutation	SNP	C	TCGA-B0-5083-01A-02D-1421-08	1615295	56370138	2758845	61	9002											
ZNF70	7621	broad.mit.edu	37	22	24087079	24087079	+	Silent	SNP	G	G	A			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	A	24087079	G	A	24087079	2	1	148	1	0	0	0	0	0	0	0	1	18115	1335	47	2		2	ZNF70	22	24087079	Silent	SNP	G	TCGA-B0-5083-01A-02D-1421-08		24087079	27217487	62	9003											
SEZ6L	23544	broad.mit.edu	37	22	26709759	26709759	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5083-01A-02D-1421-08	TCGA-B0-5083-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f90cb64-c4b8-45b1-a734-886b758871c9	6e87b1c0-278e-4d50-b05a-ee0fdf35c21d	T	26709759	G	T	26709759	3	4	148	1	0	0	0	0	1	0	0	0	14156	1203	42	4	1940	4	SEZ6L	22	26709759	Missense_Mutation	SNP	G	TCGA-B0-5083-01A-02D-1421-08	2622680	26709759	24594807	63	9004											
HPCA	3208	broad.mit.edu	37	1	33359401	33359401	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	-	33359401	A	-	33359401	7	5	149	1	0	1	0	1	0	0	0	0	7336	131	5	0	530	0	HPCA	1	33359401	Frame_Shift_Del	DEL	A	TCGA-B0-5084-01A-01D-1462-08		33359401	215891220	1	9005											
ANKRD34A	284615	broad.mit.edu	37	1	145474332	145474332	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	145474332	G	C	145474332	3	2	149	1	0	0	0	0	1	0	0	0	662	1087	38	4	1006	4	ANKRD34A	1	145474332	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	112114931	145474332	103776289	2	9006											
ILDR2	387597	broad.mit.edu	37	1	166890437	166890437	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	166890437	G	A	166890437	3	1	149	1	0	0	0	0	1	0	0	0	7717	1087	38	1	536	1	ILDR2	1	166890437	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	21416105	166890437	82360184	3	9007											
SLC30A1	7779	broad.mit.edu	37	1	211749361	211749361	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	211749361	A	T	211749361	3	4	149	1	0	0	0	0	1	0	0	0	14566	101	4	5	634	5	SLC30A1	1	211749361	Missense_Mutation	SNP	A	TCGA-B0-5084-01A-01D-1462-08	44858924	211749361	37501260	4	9008											
CAPN2	824	broad.mit.edu	37	1	223940503	223940503	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	G	223940503	C	G	223940503	3	3	149	1	0	0	0	0	1	0	0	0	2629	913	32	4	1021	4	CAPN2	1	223940503	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08	12191142	223940503	25310118	5	9009											
POMC	5443	broad.mit.edu	37	2	25384345	25384345	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	25384345	G	A	25384345	3	1	149	1	0	0	0	0	1	0	0	0	12249	1087	38	1	398	1	POMC	2	25384345	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08		25384345	217815028	6	9010											
XIRP2	129446	broad.mit.edu	37	2	168100111	168100111	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	168100111	G	A	168100111	3	1	149	1	0	0	0	0	1	0	0	0	17442	1059	37	1	2239	1	XIRP2	2	168100111	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	142715766	168100111	75099262	7	9011											
USP37	57695	broad.mit.edu	37	2	219330803	219330803	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	219330803	T	C	219330803	3	2	149	1	0	0	0	0	1	0	0	0	17080	1580	55	3	567	3	USP37	2	219330803	Missense_Mutation	SNP	T	TCGA-B0-5084-01A-01D-1462-08	51230692	219330803	23868570	8	9012											
CAPN10	11132	broad.mit.edu	37	2	241531379	241531379	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	241531379	C	T	241531379	3	4	149	1	0	0	0	0	1	0	0	0	2625	739	26	2	514	2	CAPN10	2	241531379	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08	22200576	241531379	1667994	9	9013											
TBC1D5	9779	broad.mit.edu	37	3	17226605	17226605	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	17226605	A	C	17226605	3	2	149	1	0	0	0	0	1	0	0	0	15635	330	12	5	555	5	TBC1D5	3	17226605	Missense_Mutation	SNP	A	TCGA-B0-5084-01A-01D-1462-08		17226605	180795825	10	9014											
KCNH8	131096	broad.mit.edu	37	3	19554581	19554581	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	19554581	G	T	19554581	3	4	149	1	0	0	0	0	1	0	0	0	8045	1223	43	4	2249	4	KCNH8	3	19554581	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	2327976	19554581	178467849	11	9015											
COL6A5	256076	broad.mit.edu	37	3	130162344	130162344	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	130162344	C	T	130162344	3	4	149	1	0	0	0	0	1	0	0	0	3704	652	23	1	6650	1	COL6A5	3	130162344	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08	110607763	130162344	67860086	12	9016											
OTOL1	131149	broad.mit.edu	37	3	161220146	161220146	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	161220146	C	T	161220146	3	4	149	1	0	0	0	0	1	0	0	0	11311	652	23	1	516	1	OTOL1	3	161220146	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08	31057802	161220146	36802284	13	9017											
ETV5	2119	broad.mit.edu	37	3	185823732	185823732	+	Splice_Site	SNP	C	C	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	185823732	C	A	185823732	5	1	149	1	0	0	0	0	0	0	1	0	5284	695	24	4		4	ETV5	3	185823732	Splice_Site	SNP	C	TCGA-B0-5084-01A-01D-1462-08	24603586	185823732	12198698	14	9018											
IRX1	79192	broad.mit.edu	37	5	3599646	3599646	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	3599646	C	A	3599646	3	1	149	1	0	0	0	0	1	0	0	0	7850	768	27	4	590	4	IRX1	5	3599646	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08		3599646	177315614	15	9019											
C7	730	broad.mit.edu	37	5	40959667	40959667	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	40959667	G	A	40959667	3	1	149	1	0	0	0	0	1	0	0	0	2377	1145	40	1	1652	1	C7	5	40959667	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	37360021	40959667	139955593	16	9020											
FER	2241	broad.mit.edu	37	5	108295006	108295006	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	G	108295006	C	G	108295006	3	3	149	1	0	0	0	0	1	0	0	0	5820	816	29	4	1656	4	FER	5	108295006	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08	67335339	108295006	72620254	17	9021											
PCDHA4	56144	broad.mit.edu	37	5	140188641	140188641	+	Silent	SNP	C	C	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	140188641	C	T	140188641	2	4	149	1	0	0	0	0	0	0	0	1	11533	755	27	1		1	PCDHA4	5	140188641	Silent	SNP	C	TCGA-B0-5084-01A-01D-1462-08	31893635	140188641	40726619	18	9022											
NSD1	64324	broad.mit.edu	37	5	176637152	176637152	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	-	176637152	T	-	176637152	7	5	149	1	0	1	0	1	0	0	0	0	10676	1596	56	0	1766	0	NSD1	5	176637152	Frame_Shift_Del	DEL	T	TCGA-B0-5084-01A-01D-1462-08	36448511	176637152	4278108	19	9023											
ZNF451	26036	broad.mit.edu	37	6	57012950	57012950	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	57012950	C	A	57012950	3	1	149	1	0	0	0	0	1	0	0	0	17934	506	18	4	2105	4	ZNF451	6	57012950	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08		57012950	114102117	20	9024											
OCM	654231	broad.mit.edu	37	7	5922122	5922122	+	Splice_Site	SNP	A	A	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	5922122	A	T	5922122	5	4	149	1	0	0	0	0	0	0	1	0	10828	202	7	5	66	5	OCM	7	5922122	Splice_Site	SNP	A	TCGA-B0-5084-01A-01D-1462-08		5922122	153216541	21	9025											
RFC2	5982	broad.mit.edu	37	7	73661054	73661054	+	Silent	SNP	A	A	G			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	G	73661054	A	G	73661054	2	3	149	1	0	0	0	0	0	0	0	1	13258	291	11	3		3	RFC2	7	73661054	Silent	SNP	A	TCGA-B0-5084-01A-01D-1462-08	67738932	73661054	85477609	22	9026											
LMTK2	22853	broad.mit.edu	37	7	97833456	97833456	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	97833456	T	C	97833456	3	2	149	1	0	0	0	0	1	0	0	0	8866	1609	56	3	4491	3	LMTK2	7	97833456	Missense_Mutation	SNP	T	TCGA-B0-5084-01A-01D-1462-08	24172402	97833456	61305207	23	9027											
DOCK4	9732	broad.mit.edu	37	7	111387452	111387452	+	Silent	SNP	C	C	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	111387452	C	T	111387452	2	4	149	1	0	0	0	0	0	0	0	1	4691	912	32	2		2	DOCK4	7	111387452	Silent	SNP	C	TCGA-B0-5084-01A-01D-1462-08	13553996	111387452	47751211	24	9028											
MGAM	8972	broad.mit.edu	37	7	141732690	141732690	+	Silent	SNP	T	T	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	141732690	T	C	141732690	2	2	149	1	0	0	0	0	0	0	0	1	9548	1403	49	3		3	MGAM	7	141732690	Silent	SNP	T	TCGA-B0-5084-01A-01D-1462-08	30345238	141732690	17405973	25	9029											
EIF3E	3646	broad.mit.edu	37	8	109260914	109260914	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	109260914	C	A	109260914	3	1	149	1	0	0	0	0	1	0	0	0	5017	825	29	4	1371	4	EIF3E	8	109260914	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08		109260914	37103108	26	9030											
NOL6	65083	broad.mit.edu	37	9	33469503	33469503	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	33469503	G	A	33469503	3	1	149	1	0	0	0	0	1	0	0	0	10532	1203	42	2	2807	2	NOL6	9	33469503	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08		33469503	107743928	27	9031											
HIATL1	84641	broad.mit.edu	37	9	97209207	97209207	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	97209207	T	C	97209207	3	2	149	1	0	0	0	0	1	0	0	0	7105	1522	53	3	858	3	HIATL1	9	97209207	Missense_Mutation	SNP	T	TCGA-B0-5084-01A-01D-1462-08	63739704	97209207	44004224	28	9032											
NOTCH1	4851	broad.mit.edu	37	9	139401769	139401769	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	139401769	G	A	139401769	3	1	149	1	0	0	0	0	1	0	0	0	10554	1144	40	1	4088	1	NOTCH1	9	139401769	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	42192562	139401769	1811662	29	9033											
TACC2	10579	broad.mit.edu	37	10	123844355	123844356	+	Frame_Shift_Ins	INS	-	-	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	123844356	-	C	123844355	7	5	149	1	0	1	1	0	0	0	0	0	15514	1432	50	0	2350	0	TACC2	10	123844355	Frame_Shift_Ins	INS	-	TCGA-B0-5084-01A-01D-1462-08		123844355	11690392	30	9034											
ZBTB44	29068	broad.mit.edu	37	11	130131237	130131237	+	Silent	SNP	G	G	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	130131237	G	T	130131237	2	4	149	1	0	0	0	0	0	0	0	1	17557	1124	39	4		4	ZBTB44	11	130131237	Silent	SNP	G	TCGA-B0-5084-01A-01D-1462-08		130131237	4875279	31	9035											
CACNB3	784	broad.mit.edu	37	12	49221583	49221583	+	Silent	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	49221583	G	A	49221583	2	1	149	1	0	0	0	0	0	0	0	1	2556	1190	42	2		2	CACNB3	12	49221583	Silent	SNP	G	TCGA-B0-5084-01A-01D-1462-08		49221583	84630312	32	9036											
BIN2	51411	broad.mit.edu	37	12	51693052	51693055	+	Frame_Shift_Del	DEL	TTTG	TTTG	-			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	-	51693055	TTTG	-	51693052	7	5	149	1	0	1	0	1	0	0	0	0	1433	1606	56	0	1188	0	BIN2	12	51693052	Frame_Shift_Del	DEL	TTTG	TCGA-B0-5084-01A-01D-1462-08	2471469	51693052	82158843	33	9037											
ATP5B	506	broad.mit.edu	37	12	57037243	57037243	+	Silent	SNP	A	A	G			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	G	57037243	A	G	57037243	2	3	149	1	0	0	0	0	0	0	0	1	1148	11	1	3		3	ATP5B	12	57037243	Silent	SNP	A	TCGA-B0-5084-01A-01D-1462-08	5344191	57037243	76814652	34	9038											
OAS2	4939	broad.mit.edu	37	12	113446979	113446979	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	113446979	G	T	113446979	3	4	149	1	0	0	0	0	1	0	0	0	10807	991	35	4	2092	4	OAS2	12	113446979	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	56409736	113446979	20404916	35	9039											
AKAP11	11215	broad.mit.edu	37	13	42877012	42877012	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	42877012	A	C	42877012	3	2	149	1	0	0	0	0	1	0	0	0	447	14	1	5	4152	5	AKAP11	13	42877012	Missense_Mutation	SNP	A	TCGA-B0-5084-01A-01D-1462-08		42877012	72292866	36	9040											
COG3	83548	broad.mit.edu	37	13	46077403	46077403	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	46077403	G	A	46077403	3	1	149	1	0	0	0	0	1	0	0	0	3661	1291	45	2	1567	2	COG3	13	46077403	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	3200391	46077403	69092475	37	9041											
TMCO3	55002	broad.mit.edu	37	13	114150177	114150177	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	G	114150177	A	G	114150177	3	3	149	1	0	0	0	0	1	0	0	0	16009	159	6	3	283	3	TMCO3	13	114150177	Missense_Mutation	SNP	A	TCGA-B0-5084-01A-01D-1462-08	68072774	114150177	1019701	38	9042	98	2									
TMCO3	55002	broad.mit.edu	37	13	114150178	114150178	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	114150178	C	A	114150178	3	1	149	1	0	0	0	0	1	0	0	0	16009	477	17	4	284	4	TMCO3	13	114150178	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08	1	114150178	1019700	39	9043	98	2									
FAM161B	145483	broad.mit.edu	37	14	74407656	74407656	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	74407656	G	A	74407656	3	1	149	1	0	0	0	0	1	0	0	0	5477	1203	42	2	590	2	FAM161B	14	74407656	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08		74407656	32941884	40	9044											
SPG21	51324	broad.mit.edu	37	15	65273246	65273246	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	65273246	G	A	65273246	3	1	149	1	0	0	0	0	1	0	0	0	15055	1115	39	1	773	1	SPG21	15	65273246	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08		65273246	37258146	41	9045											
SRRM2	23524	broad.mit.edu	37	16	2815941	2815941	+	Silent	SNP	C	C	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	2815941	C	T	2815941	2	4	149	1	0	0	0	0	0	0	0	1	15181	738	26	2		2	SRRM2	16	2815941	Silent	SNP	C	TCGA-B0-5084-01A-01D-1462-08		2815941	87538812	42	9046											
CNOT1	23019	broad.mit.edu	37	16	58622799	58622799	+	Silent	SNP	C	C	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	58622799	C	T	58622799	2	4	149	1	0	0	0	0	0	0	0	1	3619	726	26	2		2	CNOT1	16	58622799	Silent	SNP	C	TCGA-B0-5084-01A-01D-1462-08	55806858	58622799	31731954	43	9047											
UNC45B	146862	broad.mit.edu	37	17	33477172	33477172	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	33477172	C	T	33477172	3	4	149	1	0	0	0	0	1	0	0	0	17001	739	26	2	321	2	UNC45B	17	33477172	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08		33477172	47718038	44	9048											
EZH1	2145	broad.mit.edu	37	17	40864465	40864465	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	40864465	C	A	40864465	3	1	149	1	0	0	0	0	1	0	0	0	5335	739	26	4	1040	4	EZH1	17	40864465	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08	7387293	40864465	40330745	45	9049											
NMT1	4836	broad.mit.edu	37	17	43163945	43163945	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	43163945	G	C	43163945	3	2	149	1	0	0	0	0	1	0	0	0	10510	1233	43	4	320	4	NMT1	17	43163945	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	2299480	43163945	38031265	46	9050											
SAFB	6294	broad.mit.edu	37	19	5641841	5641841	+	Translation_Start_Site	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	5641841	G	A	5641841	1	1	149	1	0	0	0	0	0	0	0	0	13819	1145	40	1		1	SAFB	19	5641841	Translation_Start_Site	SNP	G	TCGA-B0-5084-01A-01D-1462-08		5641841	53487142	47	9051											
CYP4F8	11283	broad.mit.edu	37	19	15730745	15730747	+	RNA	DEL	TAA	TAA	-	rs140849245		TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	-	15730747	TAA	-	15730745	6	5	149	0	1	1	0	1	0	0	0	0	4193	1653	57	0		0	CYP4F8	19	15730745	RNA	DEL	TAA	TCGA-B0-5084-01A-01D-1462-08	10088904	15730745	43398238	48	9052											
ZNF430	80264	broad.mit.edu	37	19	21239825	21239826	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	21239826	-	T	21239825	7	5	149	1	0	1	1	0	0	0	0	0	17916	98	4	0	729	0	ZNF430	19	21239825	Frame_Shift_Ins	INS	-	TCGA-B0-5084-01A-01D-1462-08	5509080	21239825	37889158	49	9053											
ZNF257	113835	broad.mit.edu	37	19	22271410	22271410	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	22271410	A	T	22271410	3	4	149	1	0	0	0	0	1	0	0	0	17812	98	4	5	872	5	ZNF257	19	22271410	Missense_Mutation	SNP	A	TCGA-B0-5084-01A-01D-1462-08	1031585	22271410	36857573	50	9054											
TMEM160	54958	broad.mit.edu	37	19	47549310	47549310	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	47549310	G	A	47549310	3	1	149	1	0	0	0	0	1	0	0	0	16087	1203	42	2	68	2	TMEM160	19	47549310	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08	25277900	47549310	11579673	51	9055											
ZNF460	10794	broad.mit.edu	37	19	57802196	57802196	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	G	57802196	A	G	57802196	3	3	149	1	0	0	0	0	1	0	0	0	17936	130	5	3	297	3	ZNF460	19	57802196	Missense_Mutation	SNP	A	TCGA-B0-5084-01A-01D-1462-08	10252886	57802196	1326787	52	9056											
ZNF606	80095	broad.mit.edu	37	19	58490863	58490863	+	Silent	SNP	A	A	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	58490863	A	C	58490863	2	2	149	1	0	0	0	0	0	0	0	1	18044	175	7	5		5	ZNF606	19	58490863	Silent	SNP	A	TCGA-B0-5084-01A-01D-1462-08	688667	58490863	638120	53	9057											
SIGLEC1	6614	broad.mit.edu	37	20	3669219	3669219	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	3669219	T	C	3669219	3	2	149	1	0	0	0	0	1	0	0	0	14318	1683	59	3	15	3	SIGLEC1	20	3669219	Missense_Mutation	SNP	T	TCGA-B0-5084-01A-01D-1462-08		3669219	59356301	54	9058											
SIK1	150094	broad.mit.edu	37	21	44838289	44838289	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	A	44838289	G	A	44838289	3	1	149	1	0	0	0	0	1	0	0	0	14330	1203	42	2	768	2	SIK1	21	44838289	Missense_Mutation	SNP	G	TCGA-B0-5084-01A-01D-1462-08		44838289	3291606	55	9059											
NF2	4771	broad.mit.edu	37	22	30035203	30035203	+	Splice_Site	SNP	T	T	G			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	G	30035203	T	G	30035203	5	3	149	1	0	0	0	0	0	0	1	0	10364	1652	57	5	375	5	NF2	22	30035203	Splice_Site	SNP	T	TCGA-B0-5084-01A-01D-1462-08		30035203	21269363	56	9060											
TAB1	10454	broad.mit.edu	37	22	39811123	39811123	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	T	39811123	C	T	39811123	3	4	149	1	0	0	0	0	1	0	0	0	15507	594	21	2	152	2	TAB1	22	39811123	Missense_Mutation	SNP	C	TCGA-B0-5084-01A-01D-1462-08	9775920	39811123	11493443	57	9061											
XK	7504	broad.mit.edu	37	X	37553617	37553617	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	C	37553617	A	C	37553617	3	2	149	1	0	0	0	0	1	0	0	0	17443	11	1	5	330	5	XK	23	37553617	Missense_Mutation	SNP	A	TCGA-B0-5084-01A-01D-1462-08		37553617	117716943	58	9062											
GAGE2A	729447	broad.mit.edu	37	X	49355892	49355893	+	Frame_Shift_Del	DEL	AC	AC	-	rs147803166	by1000genomes	TCGA-B0-5084-01A-01D-1462-08	TCGA-B0-5084-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	37304384-692f-46f7-8e4e-d8aaba14f020	fbce4ebf-8285-4ce2-884e-5993aec48ae5	-	49355893	AC	-	49355892	7	5	149	1	0	1	0	1	0	0	0	0	6197	262	10	0	1281	0	GAGE2A	23	49355892	Frame_Shift_Del	DEL	AC	TCGA-B0-5084-01A-01D-1462-08	11802275	49355892	105914668	59	9063											
KIF1B	23095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10421772	10421772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	10421772	C	T	10421772	3	4	150	1	0	0	0	0	1	0	0	0	8291	797	28	2	5690	2	KIF1B	1	10421772	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08		10421772	238828849	1	9064											
RNF186	54546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	20141319	20141319	+	Silent	SNP	G	G	C	rs138663359	alternate_allele	TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	20141319	G	C	20141319	2	2	150	1	0	0	0	0	0	0	0	1	13482	1103	39	4		4	RNF186	1	20141319	Silent	SNP	G	TCGA-B0-5085-01A-01D-1462-08	9719547	20141319	229109302	2	9065											
PTPRU	10076	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	29611375	29611375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	29611375	G	T	29611375	3	4	150	1	0	0	0	0	1	0	0	0	12826	1087	38	4	2366	4	PTPRU	1	29611375	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	9470056	29611375	219639246	3	9066											
FNDC4	64838	broad.mit.edu;hgsc.bcm.edu	37	2	27716993	27716993	+	Silent	SNP	A	A	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	27716993	A	G	27716993	2	3	150	1	0	0	0	0	0	0	0	1	5978	214	8	3		3	FNDC4	2	27716993	Silent	SNP	A	TCGA-B0-5085-01A-01D-1462-08		27716993	215482380	4	9067											
MCEE	84693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	71351338	71351338	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	71351338	C	A	71351338	4	1	150	1	0	0	0	0	0	1	0	0	9384	893	31	4	162	4	MCEE	2	71351338	Nonsense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	43634345	71351338	171848035	5	9068											
CDCA7	83879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	174223477	174223477	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	174223477	T	A	174223477	3	1	150	1	0	0	0	0	1	0	0	0	3092	1783	62	5	65	5	CDCA7	2	174223477	Missense_Mutation	SNP	T	TCGA-B0-5085-01A-01D-1462-08	102872139	174223477	68975896	6	9069											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179435668	179435668	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	179435668	G	C	179435668	3	2	150	1	0	0	0	0	1	0	0	0	16747	1029	36	4	32936	4	TTN	2	179435668	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	5212191	179435668	63763705	7	9070											
BZW1	9689	broad.mit.edu	37	2	201684787	201684787	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	201684787	C	C	201684787	3	2	150	1	0	0	0	0	1	0	0	0	1580	464	16	5		5	BZW1	2	201684787	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08	22249119	201684787	41514586	8	9071											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10183745	10183746	+	Frame_Shift_Ins	INS	-	CC	CC	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	-	-	-	CC	-	-	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	CC	10183746	CC	CC	10183745	7	5	150	1	0	1	1	0	0	0	0	0	17174	1551	54	0	216	0	VHL	3	10183745	Frame_Shift_Ins	INS	-	TCGA-B0-5085-01A-01D-1462-08		10183745	187838685	9	9072											
LAMB2	3913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49169156	49169156	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	49169156	T	A	49169156	3	1	150	1	0	0	0	0	1	0	0	0	8618	1681	58	5	5048	5	LAMB2	3	49169156	Missense_Mutation	SNP	T	TCGA-B0-5085-01A-01D-1462-08	38985411	49169156	148853274	10	9073											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643828	52643828	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	52643828	T	A	52643828	4	1	150	1	0	0	0	0	0	1	0	0	11498	1530	53	5	2892	5	PBRM1	3	52643828	Nonsense_Mutation	SNP	T	TCGA-B0-5085-01A-01D-1462-08	3474672	52643828	145378602	11	9074											
ACTR8	93973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	53908276	53908276	+	Silent	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	53908276	G	A	53908276	2	1	150	1	0	0	0	0	0	0	0	1	217	933	33	2		2	ACTR8	3	53908276	Silent	SNP	G	TCGA-B0-5085-01A-01D-1462-08	1264448	53908276	144114154	12	9075	99	2									
ACTR8	93973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	53908279	53908279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	53908279	G	A	53908279	3	1	150	1	0	0	0	0	1	0	0	0	217	942	33	2	874	2	ACTR8	3	53908279	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	3	53908279	144114151	13	9076	99	2									
RAB7A	7879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128516883	128516883	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	128516883	A	T	128516883	3	4	150	1	0	0	0	0	1	0	0	0	12967	333	12	5	157	5	RAB7A	3	128516883	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08	74608604	128516883	69505547	14	9077											
ACPL2	92370	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	141011820	141011820	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	141011820	G	T	141011820	4	4	150	1	0	0	0	0	0	1	0	0	166	1291	45	4	1234	4	ACPL2	3	141011820	Nonsense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	12494937	141011820	57010610	15	9078											
TIPARP	25976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	156421359	156421359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	156421359	T	A	156421359	3	1	150	1	0	0	0	0	1	0	0	0	15936	1667	58	5	1408	5	TIPARP	3	156421359	Missense_Mutation	SNP	T	TCGA-B0-5085-01A-01D-1462-08	15409539	156421359	41601071	16	9079											
NMD3	51068	hgsc.bcm.edu;ucsc.edu	37	3	160945064	160945064	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	-	160945064	A	-	160945064	7	5	150	1	0	1	0	1	0	0	0	0	10495	188	7	0	219	0	NMD3	3	160945064	Frame_Shift_Del	DEL	A	TCGA-B0-5085-01A-01D-1462-08	4523705	160945064	37077366	17	9080											
IL6ST	3572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	55259325	55259325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	55259325	T	C	55259325	3	2	150	1	0	0	0	0	1	0	0	0	7710	1493	52	3	2132	3	IL6ST	5	55259325	Missense_Mutation	SNP	T	TCGA-B0-5085-01A-01D-1462-08		55259325	125655935	18	9081											
MAST4	375449	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66448561	66448561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	66448561	C	G	66448561	3	3	150	1	0	0	0	0	1	0	0	0	9334	855	30	4	3620	4	MAST4	5	66448561	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	11189236	66448561	114466699	19	9082											
CD180	4064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66479404	66479404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	66479404	C	T	66479404	3	4	150	1	0	0	0	0	1	0	0	0	2974	922	32	2	722	2	CD180	5	66479404	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	30843	66479404	114435856	20	9083											
PCDHB7	56129	broad.mit.edu;hgsc.bcm.edu	37	5	140553926	140553926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	140553926	G	A	140553926	3	1	150	1	0	0	0	0	1	0	0	0	11554	1261	44	2	1512	2	PCDHB7	5	140553926	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	74074522	140553926	40361334	21	9084											
TCERG1	10915	broad.mit.edu	37	5	145878250	145878250	+	Splice_Site	SNP	G	A	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	145878250	A	A	145878250	5	1	150	1	0	0	0	0	0	0	1	0	15697	1275	44	2	2445	2	TCERG1	5	145878250	Splice_Site	SNP	G	TCGA-B0-5085-01A-01D-1462-08	5324324	145878250	35037010	22	9085											
SLC6A7	6534	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149583511	149583511	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	149583511	G	C	149583511	3	2	150	1	0	0	0	0	1	0	0	0	14702	1020	36	4	1280	4	SLC6A7	5	149583511	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	3705261	149583511	31331749	23	9086											
GABRG2	2566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	161520982	161520982	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	161520982	G	T	161520982	4	4	150	1	0	0	0	0	0	1	0	0	6179	1001	35	4	262	4	GABRG2	5	161520982	Nonsense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	11937471	161520982	19394278	24	9087											
SH3PXD2B	285590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	171789871	171789871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	171789871	C	T	171789871	3	4	150	1	0	0	0	0	1	0	0	0	14270	623	22	2	2333	2	SH3PXD2B	5	171789871	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	10268889	171789871	9125389	25	9088											
JARID2	3720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	15496611	15496611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	15496611	A	T	15496611	3	4	150	1	0	0	0	0	1	0	0	0	7952	11	1	5	1181	5	JARID2	6	15496611	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08		15496611	155618456	26	9089											
AARS2	57505	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44270802	44270802	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	44270802	C	A	44270802	5	1	150	1	0	0	0	0	0	0	1	0	20	550	19	4	729	4	AARS2	6	44270802	Splice_Site	SNP	C	TCGA-B0-5085-01A-01D-1462-08	28774191	44270802	126844265	27	9090											
ROS1	6098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	117681074	117681074	+	Silent	SNP	T	T	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	117681074	T	C	117681074	2	2	150	1	0	0	0	0	0	0	0	1	13544	1548	54	3		3	ROS1	6	117681074	Silent	SNP	T	TCGA-B0-5085-01A-01D-1462-08	73410272	117681074	53433993	28	9091											
THBS2	7058	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	169648851	169648851	+	Silent	SNP	G	G	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	169648851	G	C	169648851	2	2	150	1	0	0	0	0	0	0	0	1	15866	1277	45	4		4	THBS2	6	169648851	Silent	SNP	G	TCGA-B0-5085-01A-01D-1462-08	51967777	169648851	1466216	29	9092											
GNAI1	2770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	79764504	79764504	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	79764504	A	T	79764504	4	4	150	1	0	0	0	0	0	1	0	0	6511	131	5	5	30	5	GNAI1	7	79764504	Nonsense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08		79764504	79374159	30	9093											
RBM28	55131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127975595	127975595	+	Splice_Site	SNP	A	A	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	127975595	A	C	127975595	5	2	150	1	0	0	0	0	0	0	1	0	13141	57	2	5	1379	5	RBM28	7	127975595	Splice_Site	SNP	A	TCGA-B0-5085-01A-01D-1462-08	48211091	127975595	31163068	31	9094											
SLC4A2	6522	hgsc.bcm.edu;ucsc.edu	37	7	150771368	150771369	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	150771369	-	T	150771368	7	5	150	1	0	1	1	0	0	0	0	0	14667	912	32	0	2840	0	SLC4A2	7	150771368	Frame_Shift_Ins	INS	-	TCGA-B0-5085-01A-01D-1462-08	22795773	150771368	8367295	32	9095											
CLN8	2055	broad.mit.edu;ucsc.edu	37	8	1728427	1728427	+	Silent	SNP	C	G	G	rs145929862	alternate_allele	TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	1728427	G	G	1728427	2	3	150	1	0	0	0	0	0	0	0	1	3548	639	23	4		4	CLN8	8	1728427	Silent	SNP	C	TCGA-B0-5085-01A-01D-1462-08		1728427	144635595	33	9096											
TACC1	6867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38677391	38677391	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	38677391	A	C	38677391	3	2	150	1	0	0	0	0	1	0	0	0	15513	246	9	5	639	5	TACC1	8	38677391	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08	36948964	38677391	107686631	34	9097											
HNF4G	3174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	76456146	76456146	+	Silent	SNP	A	A	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	76456146	A	G	76456146	2	3	150	1	0	0	0	0	0	0	0	1	7261	204	8	3		3	HNF4G	8	76456146	Silent	SNP	A	TCGA-B0-5085-01A-01D-1462-08	37778755	76456146	69907876	35	9098											
ZFHX4	79776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	77617698	77617698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	77617698	G	A	77617698	3	1	150	1	0	0	0	0	1	0	0	0	17647	1175	41	2	1377	2	ZFHX4	8	77617698	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	1161552	77617698	68746324	36	9099											
GRINA	2907	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145066243	145066243	+	Silent	SNP	A	A	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	145066243	A	T	145066243	2	4	150	1	0	0	0	0	0	0	0	1	6792	146	6	5		5	GRINA	8	145066243	Silent	SNP	A	TCGA-B0-5085-01A-01D-1462-08	67448545	145066243	1297779	37	9100											
GRHPR	9380	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	37424868	37424868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	37424868	A	G	37424868	3	3	150	1	0	0	0	0	1	0	0	0	6773	333	12	3	116	3	GRHPR	9	37424868	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08		37424868	103788563	38	9101											
PNPLA7	375775	broad.mit.edu;ucsc.edu	37	9	140379177	140379178	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	140379178	A	A	140379177	7	5	150	1	0	1	1	0	0	0	0	0	12177	594	21	0	1879	0	PNPLA7	9	140379177	Frame_Shift_Ins	INS	-	TCGA-B0-5085-01A-01D-1462-08	102954309	140379177	834254	39	9102											
PRKG1	5592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	53667290	53667290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	53667290	C	T	53667290	3	4	150	1	0	0	0	0	1	0	0	0	12532	681	24	2	1010	2	PRKG1	10	53667290	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08		53667290	81867457	40	9103											
RUFY2	55680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70141061	70141061	+	Silent	SNP	A	A	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	70141061	A	G	70141061	2	3	150	1	0	0	0	0	0	0	0	1	13752	446	16	3		3	RUFY2	10	70141061	Silent	SNP	A	TCGA-B0-5085-01A-01D-1462-08	16473771	70141061	65393686	41	9104											
PSTK	118672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	124742525	124742525	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	124742525	C	T	124742525	4	4	150	1	0	0	0	0	0	1	0	0	12730	595	21	2	499	2	PSTK	10	124742525	Nonsense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	54601464	124742525	10792222	42	9105											
OR52J3	119679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5068545	5068545	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	5068545	C	T	5068545	4	4	150	1	0	0	0	0	0	1	0	0	11129	876	31	1	792	1	OR52J3	11	5068545	Nonsense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08		5068545	129937971	43	9106											
RPS13	6207	broad.mit.edu;hgsc.bcm.edu	37	11	17098784	17098784	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	17098784	A	C	17098784	3	2	150	1	0	0	0	0	1	0	0	0	13636	40	2	5	389	5	RPS13	11	17098784	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08	12030239	17098784	117907732	44	9107											
KCNC1	3746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	17793895	17793895	+	Silent	SNP	T	T	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	17793895	T	C	17793895	2	2	150	1	0	0	0	0	0	0	0	1	8021	1538	54	3		3	KCNC1	11	17793895	Silent	SNP	T	TCGA-B0-5085-01A-01D-1462-08	695111	17793895	117212621	45	9108											
VSIG2	23584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124619711	124619711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	124619711	C	T	124619711	3	4	150	1	0	0	0	0	1	0	0	0	17236	739	26	2	520	2	VSIG2	11	124619711	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	106825816	124619711	10386805	46	9109											
LRRC23	10233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7023184	7023184	+	Silent	SNP	C	C	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	7023184	C	A	7023184	2	1	150	1	0	0	0	0	0	0	0	1	8985	903	32	4		4	LRRC23	12	7023184	Silent	SNP	C	TCGA-B0-5085-01A-01D-1462-08		7023184	126828711	47	9110											
CLEC2D	29121	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9822375	9822375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	9822375	A	C	9822375	3	2	150	1	0	0	0	0	1	0	0	0	3510	98	4	5	47	5	CLEC2D	12	9822375	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08	2799191	9822375	124029520	48	9111											
PRPF40B	25766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	50037528	50037528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	50037528	A	G	50037528	3	3	150	1	0	0	0	0	1	0	0	0	12582	159	6	3	2462	3	PRPF40B	12	50037528	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08	40215153	50037528	83814367	49	9112											
PITPNM2	57605	broad.mit.edu;ucsc.edu	37	12	123488978	123488978	+	Silent	SNP	C	T	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	123488978	T	T	123488978	2	4	150	1	0	0	0	0	0	0	0	1	11958	639	23	1		1	PITPNM2	12	123488978	Silent	SNP	C	TCGA-B0-5085-01A-01D-1462-08	73451450	123488978	10362917	50	9113											
COL4A2	1284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	111102707	111102707	+	Silent	SNP	C	C	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	111102707	C	A	111102707	2	1	150	1	0	0	0	0	0	0	0	1	3692	639	23	4		4	COL4A2	13	111102707	Silent	SNP	C	TCGA-B0-5085-01A-01D-1462-08		111102707	4067171	51	9114											
MKRN3	7681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	23811752	23811752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	23811752	C	A	23811752	3	1	150	1	0	0	0	0	1	0	0	0	9615	710	25	4	825	4	MKRN3	15	23811752	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08		23811752	78719640	52	9115											
SPRED1	161742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	38616982	38616982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	38616982	A	G	38616982	3	3	150	1	0	0	0	0	1	0	0	0	15104	101	4	3	409	3	SPRED1	15	38616982	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08	14805230	38616982	63914410	53	9116											
PRM3	58531	hgsc.bcm.edu	37	16	11367390	11367401	+	In_Frame_Del	DEL	GCTGTGGCCTGG	GCTGTGGCCTGG	-	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	GCTGTGGCCTGG	GCTGTGGCCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	-	11367401	GCTGTGGCCTGG	-	11367390	7	5	150	1	0	1	0	1	0	0	0	0	12544	1310	46	0	249	0	PRM3	16	11367390	In_Frame_Del	DEL	GCTGTGGCCTGG	TCGA-B0-5085-01A-01D-1462-08		11367390	78987363	54	9117											
PAPD5	64282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	50257298	50257298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	50257298	G	A	50257298	3	1	150	1	0	0	0	0	1	0	0	0	11432	1014	35	2	1366	2	PAPD5	16	50257298	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	38889908	50257298	40097455	55	9118											
VAC14	55697	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	70816984	70816984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	70816984	T	C	70816984	3	2	150	1	0	0	0	0	1	0	0	0	17123	1792	62	3	1637	3	VAC14	16	70816984	Missense_Mutation	SNP	T	TCGA-B0-5085-01A-01D-1462-08	20559686	70816984	19537769	56	9119											
MYO15A	51168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18049342	18049342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	18049342	G	A	18049342	3	1	150	1	0	0	0	0	1	0	0	0	10070	1319	46	2	6540	2	MYO15A	17	18049342	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08		18049342	63145868	57	9120											
BTBD17	388419	broad.mit.edu;hgsc.bcm.edu	37	17	72353257	72353257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	72353257	C	T	72353257	3	4	150	1	0	0	0	0	1	0	0	0	1544	507	18	2	464	2	BTBD17	17	72353257	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	54303915	72353257	8841953	58	9121											
CDK3	1018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73998146	73998146	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	73998146	T	A	73998146	3	1	150	1	0	0	0	0	1	0	0	0	3142	1725	60	5	248	5	CDK3	17	73998146	Missense_Mutation	SNP	T	TCGA-B0-5085-01A-01D-1462-08	1644889	73998146	7197064	59	9122											
STARD6	147323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	51863590	51863590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	51863590	G	T	51863590	3	4	150	1	0	0	0	0	1	0	0	0	15273	1261	44	4	505	4	STARD6	18	51863590	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08		51863590	26213658	60	9123											
TMPRSS9	360200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2422196	2422196	+	Silent	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	2422196	G	A	2422196	2	1	150	1	0	0	0	0	0	0	0	1	16265	933	33	2		2	TMPRSS9	19	2422196	Silent	SNP	G	TCGA-B0-5085-01A-01D-1462-08		2422196	56706787	61	9124											
CRTC1	23373	broad.mit.edu;hgsc.bcm.edu	37	19	18886547	18886547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	18886547	C	A	18886547	3	1	150	1	0	0	0	0	1	0	0	0	3901	681	24	4	1711	4	CRTC1	19	18886547	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	16464351	18886547	40242436	62	9125											
SPHK2	56848	broad.mit.edu;hgsc.bcm.edu	37	19	49129225	49129225	+	Silent	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	49129225	G	A	49129225	2	1	150	1	0	0	0	0	0	0	0	1	15059	1074	38	1		1	SPHK2	19	49129225	Silent	SNP	G	TCGA-B0-5085-01A-01D-1462-08	30242678	49129225	9999758	63	9126											
TGM3	7053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2312884	2312884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	2312884	A	G	2312884	3	3	150	1	0	0	0	0	1	0	0	0	15843	217	8	3	1608	3	TGM3	20	2312884	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08		2312884	60712636	64	9127											
NFATC2	4773	broad.mit.edu;ucsc.edu	37	20	50092197	50092197	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	-	50092197	-	-	50092197	7	5	150	1	0	1	0	1	0	0	0	0	10369	985	34	0	1520	0	NFATC2	20	50092197	Frame_Shift_Del	DEL	G	TCGA-B0-5085-01A-01D-1462-08	47779313	50092197	12933323	65	9128											
GRAP2	9402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	40343157	40343157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	40343157	A	T	40343157	3	4	150	1	0	0	0	0	1	0	0	0	6761	246	9	5	49	5	GRAP2	22	40343157	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08		40343157	10961409	66	9129											
TTLL1	25809	broad.mit.edu;ucsc.edu	37	22	43464519	43464519	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	43464519	G	G	43464519	3	3	150	1	0	0	0	0	1	0	0	0	16734	1696	59	5	899	5	TTLL1	22	43464519	Missense_Mutation	SNP	T	TCGA-B0-5085-01A-01D-1462-08	3121362	43464519	7840047	67	9130											
DDX53	168400	broad.mit.edu;hgsc.bcm.edu	37	X	23018221	23018221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	23018221	G	A	23018221	3	1	150	1	0	0	0	0	1	0	0	0	4373	942	33	2	49	2	DDX53	23	23018221	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08		23018221	132252339	68	9131											
DCAF8L2	347442	broad.mit.edu;ucsc.edu	37	X	27766433	27766433	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	27766433	T	T	27766433	3	4	150	1	0	0	0	0	1	0	0	0	4280	1261	44	4	1423	4	DCAF8L2	23	27766433	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	4748212	27766433	127504127	69	9132											
DDX3X	1654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	41203496	41203496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	41203496	C	T	41203496	3	4	150	1	0	0	0	0	1	0	0	0	4360	838	29	2	907	2	DDX3X	23	41203496	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	13437063	41203496	114067064	70	9133											
PHF16	9767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	46917973	46917973	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	C	46917973	A	C	46917973	3	2	150	1	0	0	0	0	1	0	0	0	11834	247	9	5	2004	5	PHF16	23	46917973	Missense_Mutation	SNP	A	TCGA-B0-5085-01A-01D-1462-08	5714477	46917973	108352587	71	9134											
HUWE1	10075	broad.mit.edu;hgsc.bcm.edu	37	X	53674403	53674403	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	G	53674403	C	G	53674403	3	3	150	1	0	0	0	0	1	0	0	0	7468	922	32	4	13181	4	HUWE1	23	53674403	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	6756430	53674403	101596157	72	9135											
OGT	8473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	70784541	70784541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	70784541	G	A	70784541	3	1	150	1	0	0	0	0	1	0	0	0	10854	1145	40	1	2601	1	OGT	23	70784541	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	17110138	70784541	84486019	73	9136											
PHKA1	5255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	71831023	71831023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	71831023	C	A	71831023	3	1	150	1	0	0	0	0	1	0	0	0	11850	595	21	4	1334	4	PHKA1	23	71831023	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	1046482	71831023	83439537	74	9137											
LPAR4	2846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	78011131	78011131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	T	78011131	G	T	78011131	3	4	150	1	0	0	0	0	1	0	0	0	8914	1348	47	4	767	4	LPAR4	23	78011131	Missense_Mutation	SNP	G	TCGA-B0-5085-01A-01D-1462-08	6180108	78011131	77259429	75	9138											
IGSF1	3547	broad.mit.edu;ucsc.edu	37	X	130416649	130416649	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5085-01A-01D-1462-08	TCGA-B0-5085-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a36e36ee-48f3-4674-a9f3-a121a09535c5	d83d2175-b165-4ace-82d4-c72083ba8bf2	A	130416649	A	A	130416649	3	1	150	1	0	0	0	0	1	0	0	0	7603	478	17	4	3066	4	IGSF1	23	130416649	Missense_Mutation	SNP	C	TCGA-B0-5085-01A-01D-1462-08	52405518	130416649	24853911	76	9139											
MYOM3	127294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24432548	24432548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	24432548	T	C	24432548	3	2	151	1	0	0	0	0	1	0	0	0	10100	1551	54	3	4023	3	MYOM3	1	24432548	Missense_Mutation	SNP	T	TCGA-B0-5088-01A-01D-1462-08		24432548	224818073	1	9140											
GNL2	29889	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	38059398	38059398	+	Silent	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	38059398	G	A	38059398	2	1	151	1	0	0	0	0	0	0	0	1	6543	1164	41	2		2	GNL2	1	38059398	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08	13626850	38059398	211191223	2	9141											
AKNAD1	254268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109366227	109366227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	109366227	G	A	109366227	3	1	151	1	0	0	0	0	1	0	0	0	464	1174	41	2	510	2	AKNAD1	1	109366227	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	71306829	109366227	139884394	3	9142											
PSMB4	5692	hgsc.bcm.edu;ucsc.edu	37	1	151372944	151372945	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	151372945	-	T	151372944	7	5	151	1	0	1	1	0	0	0	0	0	12689	1174	41	0	384	0	PSMB4	1	151372944	Frame_Shift_Ins	INS	-	TCGA-B0-5088-01A-01D-1462-08	42006717	151372944	97877677	4	9143											
METTL13	51603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	171756920	171756920	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	171756920	C	G	171756920	3	3	151	1	0	0	0	0	1	0	0	0	9504	827	29	4	1173	4	METTL13	1	171756920	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08	20383976	171756920	77493701	5	9144											
KDM5B	10765	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	202777266	202777266	+	Silent	SNP	G	G	C	rs150129345	byfrequency;alternate_allele	TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	202777266	G	C	202777266	2	2	151	1	0	0	0	0	0	0	0	1	8141	1103	39	4		4	KDM5B	1	202777266	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08	31020346	202777266	46473355	6	9145											
LYST	1130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	235894212	235894212	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	235894212	A	C	235894212	3	2	151	1	0	0	0	0	1	0	0	0	9135	127	5	5	2498	5	LYST	1	235894212	Missense_Mutation	SNP	A	TCGA-B0-5088-01A-01D-1462-08	33116946	235894212	13356409	7	9146											
FMN2	56776	broad.mit.edu;ucsc.edu	37	1	240370625	240370625	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	240370625	G	G	240370625	3	3	151	1	0	0	0	0	1	0	0	0	5957	130	5	3	2531	3	FMN2	1	240370625	Missense_Mutation	SNP	A	TCGA-B0-5088-01A-01D-1462-08	4476413	240370625	8879996	8	9147											
KIAA1841	84542	broad.mit.edu	37	2	61336340	61336340	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	61336340	C	C	61336340	3	2	151	1	0	0	0	0	1	0	0	0	8268	1020	36	4	1707	4	KIAA1841	2	61336340	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08		61336340	181863033	9	9148											
NAGK	55577	broad.mit.edu;hgsc.bcm.edu	37	2	71299785	71299785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	71299785	A	G	71299785	3	3	151	1	0	0	0	0	1	0	0	0	10149	217	8	3	526	3	NAGK	2	71299785	Missense_Mutation	SNP	A	TCGA-B0-5088-01A-01D-1462-08	9963445	71299785	171899588	10	9149											
CCNT2	905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	135711411	135711411	+	Silent	SNP	A	A	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	135711411	A	G	135711411	2	3	151	1	0	0	0	0	0	0	0	1	2937	40	2	3		3	CCNT2	2	135711411	Silent	SNP	A	TCGA-B0-5088-01A-01D-1462-08	64411626	135711411	107487962	11	9150											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141773379	141773379	+	Silent	SNP	T	T	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	141773379	T	G	141773379	2	3	151	1	0	0	0	0	0	0	0	1	8962	1799	63	5		5	LRP1B	2	141773379	Silent	SNP	T	TCGA-B0-5088-01A-01D-1462-08	6061968	141773379	101425994	12	9151											
KBTBD10	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170371427	170371427	+	Silent	SNP	A	A	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	170371427	A	T	170371427	2	4	151	1	0	0	0	0	0	0	0	1	7997	146	6	5		5	KBTBD10	2	170371427	Silent	SNP	A	TCGA-B0-5088-01A-01D-1462-08	28598048	170371427	72827946	13	9152											
OSBPL6	114880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179253841	179253841	+	Silent	SNP	C	C	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	179253841	C	G	179253841	2	3	151	1	0	0	0	0	0	0	0	1	11288	581	21	4		4	OSBPL6	2	179253841	Silent	SNP	C	TCGA-B0-5088-01A-01D-1462-08	8882414	179253841	63945532	14	9153											
VIL1	7429	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219296898	219296898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	219296898	G	A	219296898	3	1	151	1	0	0	0	0	1	0	0	0	17176	1145	40	1	1375	1	VIL1	2	219296898	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	40043057	219296898	23902475	15	9154											
CHL1	10752	broad.mit.edu;hgsc.bcm.edu	37	3	391066	391066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	391066	C	A	391066	3	1	151	1	0	0	0	0	1	0	0	0	3351	477	17	4	903	4	CHL1	3	391066	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08		391066	197631364	16	9155											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188240	10188240	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	10188240	T	A	10188240	3	1	151	1	0	0	0	0	1	0	0	0	17174	1609	56	5	389	5	VHL	3	10188240	Missense_Mutation	SNP	T	TCGA-B0-5088-01A-01D-1462-08	9797174	10188240	187834190	17	9156											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52443866	52443866	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	52443866	C	G	52443866	3	3	151	1	0	0	0	0	1	0	0	0	1311	797	28	4	2228	4	BAP1	3	52443866	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08	42255626	52443866	145578564	18	9157											
ATXN7	6314	hgsc.bcm.edu;ucsc.edu	37	3	63973813	63973813	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	-	63973813	A	-	63973813	7	5	151	1	0	1	0	1	0	0	0	0	1215	131	5	0	1268	0	ATXN7	3	63973813	Frame_Shift_Del	DEL	A	TCGA-B0-5088-01A-01D-1462-08	11529947	63973813	134048617	19	9158											
OR5H15	403274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	97887843	97887843	+	Silent	SNP	A	A	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	97887843	A	G	97887843	2	3	151	1	0	0	0	0	0	0	0	1	11168	98	4	3		3	OR5H15	3	97887843	Silent	SNP	A	TCGA-B0-5088-01A-01D-1462-08	33914030	97887843	100134587	20	9159											
EEFSEC	60678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128060617	128060617	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	128060617	G	C	128060617	3	2	151	1	0	0	0	0	1	0	0	0	4933	1116	39	4	1346	4	EEFSEC	3	128060617	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	30172774	128060617	69961813	21	9160	100	2									
EEFSEC	60678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128060618	128060618	+	Silent	SNP	G	G	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	128060618	G	T	128060618	2	4	151	1	0	0	0	0	0	0	0	1	4933	1190	42	4		4	EEFSEC	3	128060618	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08	1	128060618	69961812	22	9161	100	2									
SLITRK3	22865	broad.mit.edu;hgsc.bcm.edu	37	3	164907318	164907318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	164907318	A	G	164907318	3	3	151	1	0	0	0	0	1	0	0	0	14757	131	5	3	1636	3	SLITRK3	3	164907318	Missense_Mutation	SNP	A	TCGA-B0-5088-01A-01D-1462-08	36846700	164907318	33115112	23	9162											
IGF2BP2	10644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	185393190	185393190	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	185393190	T	A	185393190	3	1	151	1	0	0	0	0	1	0	0	0	7581	1783	62	5	866	5	IGF2BP2	3	185393190	Missense_Mutation	SNP	T	TCGA-B0-5088-01A-01D-1462-08	20485872	185393190	12629240	24	9163											
SLIT2	9353	broad.mit.edu	37	4	20490577	20490577	+	Silent	SNP	G	A	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	20490577	A	A	20490577	2	1	151	1	0	0	0	0	0	0	0	1	14753	991	35	2		2	SLIT2	4	20490577	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08		20490577	170663699	25	9164											
PCDHA11	56138	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140248769	140248769	+	Silent	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	140248769	G	A	140248769	2	1	151	1	0	0	0	0	0	0	0	1	11528	1161	41	2		2	PCDHA11	5	140248769	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08		140248769	40666491	26	9165											
C6orf142	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	54095578	54095578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	54095578	G	T	54095578	3	4	151	1	0	0	0	0	1	0	0	0	2335	1319	46	4	1222	4	C6orf142	6	54095578	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08		54095578	117019489	27	9166											
GFRAL	389400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	55214903	55214903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	55214903	G	T	55214903	3	4	151	1	0	0	0	0	1	0	0	0	6358	991	35	4	344	4	GFRAL	6	55214903	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	1119325	55214903	115900164	28	9167											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56399926	56399926	+	Silent	SNP	T	T	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	56399926	T	C	56399926	2	2	151	1	0	0	0	0	0	0	0	1	4785	1722	60	3		3	DST	6	56399926	Silent	SNP	T	TCGA-B0-5088-01A-01D-1462-08	1185023	56399926	114715141	29	9168											
SLC22A16	85413	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	110763747	110763747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	110763747	G	T	110763747	3	4	151	1	0	0	0	0	1	0	0	0	14460	971	34	4	870	4	SLC22A16	6	110763747	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	54363821	110763747	60351320	30	9169											
ZNF789	285989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99084910	99084910	+	Silent	SNP	T	T	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	99084910	T	C	99084910	2	2	151	1	0	0	0	0	0	0	0	1	18172	1432	50	3		3	ZNF789	7	99084910	Silent	SNP	T	TCGA-B0-5088-01A-01D-1462-08		99084910	60053753	31	9170											
STAG3	10734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99811404	99811404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	99811404	T	C	99811404	3	2	151	1	0	0	0	0	1	0	0	0	15256	1764	61	3	3770	3	STAG3	7	99811404	Missense_Mutation	SNP	T	TCGA-B0-5088-01A-01D-1462-08	726494	99811404	59327259	32	9171											
FLNC	2318	broad.mit.edu;hgsc.bcm.edu	37	7	128494133	128494133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	128494133	G	A	128494133	3	1	151	1	0	0	0	0	1	0	0	0	5942	1116	39	1	6748	1	FLNC	7	128494133	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	28682729	128494133	30644530	33	9172											
PRKAG2	51422	hgsc.bcm.edu;ucsc.edu	37	7	151265857	151265862	+	In_Frame_Del	DEL	CCACTG	CCACTG	-	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	CCACTG	CCACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	-	151265862	CCACTG	-	151265857	7	5	151	1	0	1	0	1	0	0	0	0	12511	623	22	0	555	0	PRKAG2	7	151265857	In_Frame_Del	DEL	CCACTG	TCGA-B0-5088-01A-01D-1462-08	22771724	151265857	7872806	34	9173											
GPR172A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145584463	145584463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	145584463	G	A	145584463	3	1	151	1	0	0	0	0	1	0	0	0	6676	1275	44	2	1140	2	GPR172A	8	145584463	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08		145584463	779559	35	9174											
PPP1R16A	84988	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145722670	145722670	+	Silent	SNP	C	C	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	145722670	C	T	145722670	2	4	151	1	0	0	0	0	0	0	0	1	12375	610	22	2		2	PPP1R16A	8	145722670	Silent	SNP	C	TCGA-B0-5088-01A-01D-1462-08	138207	145722670	641352	36	9175											
KCNV2	169522	broad.mit.edu;hgsc.bcm.edu	37	9	2718197	2718197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	2718197	G	A	2718197	3	1	151	1	0	0	0	0	1	0	0	0	8102	1087	38	1	460	1	KCNV2	9	2718197	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08		2718197	138495234	37	9176											
MEGF9	1955	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123384993	123384993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	123384993	T	C	123384993	3	2	151	1	0	0	0	0	1	0	0	0	9471	1406	49	3	980	3	MEGF9	9	123384993	Missense_Mutation	SNP	T	TCGA-B0-5088-01A-01D-1462-08	120666796	123384993	17828438	38	9177											
C9orf114	51490	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131586388	131586388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	131586388	C	A	131586388	3	1	151	1	0	0	0	0	1	0	0	0	2451	652	23	4	265	4	C9orf114	9	131586388	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08	8201395	131586388	9627043	39	9178											
YME1L1	10730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	27437878	27437878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	27437878	T	C	27437878	3	2	151	1	0	0	0	0	1	0	0	0	17499	1580	55	3	2272	3	YME1L1	10	27437878	Missense_Mutation	SNP	T	TCGA-B0-5088-01A-01D-1462-08		27437878	108096869	40	9179											
PAPSS2	9060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	89473886	89473886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	89473886	A	G	89473886	3	3	151	1	0	0	0	0	1	0	0	0	11442	246	9	3	481	3	PAPSS2	10	89473886	Missense_Mutation	SNP	A	TCGA-B0-5088-01A-01D-1462-08	62036008	89473886	46060861	41	9180											
NSMCE4A	54780	hgsc.bcm.edu;ucsc.edu	37	10	123730567	123730569	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	-	123730569	CTT	-	123730567	7	5	151	1	0	1	0	1	0	0	0	0	10684	797	28	0	801	0	NSMCE4A	10	123730567	In_Frame_Del	DEL	CTT	TCGA-B0-5088-01A-01D-1462-08	34256681	123730567	11804180	42	9181											
CTBP2	1488	broad.mit.edu;hgsc.bcm.edu	37	10	126683133	126683133	+	Silent	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	126683133	G	A	126683133	2	1	151	1	0	0	0	0	0	0	0	1	4000	991	35	2		2	CTBP2	10	126683133	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08	2952566	126683133	8851614	43	9182											
SPRYD5	0	broad.mit.edu;ucsc.edu	37	11	55653066	55653066	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	55653066	T	T	55653066	3	4	151	1	0	0	0	0	1	0	0	0	15123	98	4	5	164	5	SPRYD5	11	55653066	Missense_Mutation	SNP	A	TCGA-B0-5088-01A-01D-1462-08		55653066	79353450	44	9183											
EXPH5	23086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108382192	108382192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	108382192	C	G	108382192	3	3	151	1	0	0	0	0	1	0	0	0	5324	739	26	4	1931	4	EXPH5	11	108382192	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08	52729126	108382192	26624324	45	9184											
ABCC9	10060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21960403	21960403	+	Silent	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	21960403	G	A	21960403	2	1	151	1	0	0	0	0	0	0	0	1	59	1277	45	2		2	ABCC9	12	21960403	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08		21960403	111891492	46	9185											
TBC1D15	64786	broad.mit.edu;hgsc.bcm.edu	37	12	72274276	72274276	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	72274276	C	G	72274276	3	3	151	1	0	0	0	0	1	0	0	0	15616	827	29	4	370	4	TBC1D15	12	72274276	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08	50313873	72274276	61577619	47	9186											
NOS1	4842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117768660	117768660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	117768660	A	G	117768660	3	3	151	1	0	0	0	0	1	0	0	0	10548	131	5	3	4201	3	NOS1	12	117768660	Missense_Mutation	SNP	A	TCGA-B0-5088-01A-01D-1462-08	45494384	117768660	16083235	48	9187											
KIAA0564	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	42361642	42361642	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	G	42361642	T	G	42361642	3	3	151	1	0	0	0	0	1	0	0	0	8192	1841	64	5	3732	5	KIAA0564	13	42361642	Missense_Mutation	SNP	T	TCGA-B0-5088-01A-01D-1462-08		42361642	72808236	49	9188											
DACT1	51339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	59113096	59113096	+	Silent	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	59113096	G	A	59113096	2	1	151	1	0	0	0	0	0	0	0	1	4224	962	34	2		2	DACT1	14	59113096	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08		59113096	48236444	50	9189											
CCNB2	9133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59406998	59406998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	59406998	G	A	59406998	3	1	151	1	0	0	0	0	1	0	0	0	2915	1261	44	2	538	2	CCNB2	15	59406998	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08		59406998	43124394	51	9190											
ARIH1	25820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	72848195	72848195	+	Silent	SNP	T	T	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	72848195	T	C	72848195	2	2	151	1	0	0	0	0	0	0	0	1	923	1509	53	3		3	ARIH1	15	72848195	Silent	SNP	T	TCGA-B0-5088-01A-01D-1462-08	13441197	72848195	29683197	52	9191											
SIN3A	25942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75682103	75682103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	75682103	C	A	75682103	3	1	151	1	0	0	0	0	1	0	0	0	14338	855	30	4	934	4	SIN3A	15	75682103	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08	2833908	75682103	26849289	53	9192											
CNTNAP1	8506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40848118	40848118	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	40848118	G	C	40848118	3	2	151	1	0	0	0	0	1	0	0	0	3648	1203	42	4	3500	4	CNTNAP1	17	40848118	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08		40848118	40347092	54	9193											
COL1A1	1277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48272628	48272628	+	Missense_Mutation	SNP	C	C	T	rs72648328	alternate_allele	TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	48272628	C	T	48272628	3	4	151	1	0	0	0	0	1	0	0	0	3679	623	22	2	3262	2	COL1A1	17	48272628	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08	7424510	48272628	32922582	55	9194											
CACNG5	27091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	64875148	64875148	+	Silent	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	64875148	G	A	64875148	2	1	151	1	0	0	0	0	0	0	0	1	2562	1277	45	2		2	CACNG5	17	64875148	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08	16602520	64875148	16320062	56	9195											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	7009293	7009293	+	Missense_Mutation	SNP	C	C	T	rs149753863	byfrequency	TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	7009293	C	T	7009293	3	4	151	1	0	0	0	0	1	0	0	0	8612	884	31	1	5429	1	LAMA1	18	7009293	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08		7009293	71067955	57	9196											
MAPK4	5596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	48190332	48190332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	48190332	G	A	48190332	3	1	151	1	0	0	0	0	1	0	0	0	9287	1203	42	2	6	2	MAPK4	18	48190332	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	41181039	48190332	29886916	58	9197											
USHBP1	83878	broad.mit.edu	37	19	17370531	17370531	+	Missense_Mutation	SNP	G	T	T	rs150046287	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	17370531	T	T	17370531	3	4	151	1	0	0	0	0	1	0	0	0	17049	1174	41	4	1364	4	USHBP1	19	17370531	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08		17370531	41758452	59	9198											
ATP1A3	478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42482093	42482093	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	C	42482093	G	C	42482093	3	2	151	1	0	0	0	0	1	0	0	0	1130	1252	44	4	1143	4	ATP1A3	19	42482093	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	25111562	42482093	16646890	60	9199											
KLK13	26085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51559929	51559929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	51559929	C	T	51559929	3	4	151	1	0	0	0	0	1	0	0	0	8408	536	19	1	88	1	KLK13	19	51559929	Missense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08	9077836	51559929	7569054	61	9200											
FAM83D	81610	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	37580732	37580732	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	37580732	C	T	37580732	4	4	151	1	0	0	0	0	0	1	0	0	5643	827	29	2	1431	2	FAM83D	20	37580732	Nonsense_Mutation	SNP	C	TCGA-B0-5088-01A-01D-1462-08		37580732	25444788	62	9201											
NRIP1	8204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	16338035	16338035	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	16338035	G	A	16338035	4	1	151	1	0	0	0	0	0	1	0	0	10659	1299	45	2	1001	2	NRIP1	21	16338035	Nonsense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08		16338035	31791860	63	9202											
SYNJ1	8867	broad.mit.edu;hgsc.bcm.edu	37	21	34066598	34066598	+	Silent	SNP	A	A	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	34066598	A	T	34066598	2	4	151	1	0	0	0	0	0	0	0	1	15464	1	1	5		5	SYNJ1	21	34066598	Silent	SNP	A	TCGA-B0-5088-01A-01D-1462-08	17728563	34066598	14063297	64	9203											
ITGB2	3689	broad.mit.edu;ucsc.edu	37	21	46321408	46321408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	46321408	A	A	46321408	3	1	151	1	0	0	0	0	1	0	0	0	7901	1130	39	1	1613	1	ITGB2	21	46321408	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	12254810	46321408	1808487	65	9204											
SCML1	6322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	17768309	17768309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	T	17768309	G	T	17768309	3	4	151	1	0	0	0	0	1	0	0	0	13922	1261	44	4	620	4	SCML1	23	17768309	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08		17768309	137502251	66	9205											
RPGR	6103	broad.mit.edu;ucsc.edu	37	X	38182653	38182653	+	Silent	SNP	G	A	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	38182653	A	A	38182653	2	1	151	1	0	0	0	0	0	0	0	1	13561	1130	39	1		1	RPGR	23	38182653	Silent	SNP	G	TCGA-B0-5088-01A-01D-1462-08	20414344	38182653	117087907	67	9206											
ZNF711	7552	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	84510342	84510342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5088-01A-01D-1462-08	TCGA-B0-5088-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56245d6-c681-44e0-9eb2-504bee3e1b32	2543d48c-413b-4ff9-8dc3-125a19829056	A	84510342	G	A	84510342	3	1	151	1	0	0	0	0	1	0	0	0	18128	1290	45	2	163	2	ZNF711	23	84510342	Missense_Mutation	SNP	G	TCGA-B0-5088-01A-01D-1462-08	46327689	84510342	70760218	68	9207											
AADACL4	343066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12711197	12711197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	12711197	T	C	12711197	3	2	152	1	0	0	0	0	1	0	0	0	13	1764	61	3	230	3	AADACL4	1	12711197	Missense_Mutation	SNP	T	TCGA-B0-5092-01A-01D-1421-08		12711197	236539424	1	9208											
ABCD3	5825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94946103	94946103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	94946103	A	G	94946103	3	3	152	1	0	0	0	0	1	0	0	0	62	352	13	3	833	3	ABCD3	1	94946103	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	82234906	94946103	154304518	2	9209											
DPYD	1806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	97564120	97564120	+	Silent	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	97564120	C	T	97564120	2	4	152	1	0	0	0	0	0	0	0	1	4747	813	29	2		2	DPYD	1	97564120	Silent	SNP	C	TCGA-B0-5092-01A-01D-1421-08	2618017	97564120	151686501	3	9210											
KCNC4	3749	broad.mit.edu;hgsc.bcm.edu	37	1	110766481	110766481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	110766481	C	T	110766481	3	4	152	1	0	0	0	0	1	0	0	0	8024	623	22	2	1580	2	KCNC4	1	110766481	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	13202361	110766481	138484140	4	9211											
LRIG2	9860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	113616152	113616152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	113616152	C	T	113616152	3	4	152	1	0	0	0	0	1	0	0	0	8952	913	32	2	126	2	LRIG2	1	113616152	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	2849671	113616152	135634469	5	9212											
SELP	6403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169565278	169565278	+	Silent	SNP	A	A	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	169565278	A	G	169565278	2	3	152	1	0	0	0	0	0	0	0	1	14032	127	5	3		3	SELP	1	169565278	Silent	SNP	A	TCGA-B0-5092-01A-01D-1421-08	55949126	169565278	79685343	6	9213											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32640716	32640716	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	32640716	C	A	32640716	4	1	152	1	0	0	0	0	0	1	0	0	1438	838	29	4	2395	4	BIRC6	2	32640716	Nonsense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08		32640716	210558657	7	9214											
ZC3H6	376940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	113074843	113074843	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	113074843	A	C	113074843	3	2	152	1	0	0	0	0	1	0	0	0	17583	15	1	5	936	5	ZC3H6	2	113074843	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	80434127	113074843	130124530	8	9215											
UGGT1	56886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128927880	128927880	+	Silent	SNP	G	G	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	128927880	G	T	128927880	2	4	152	1	0	0	0	0	0	0	0	1	16953	1045	37	4		4	UGGT1	2	128927880	Silent	SNP	G	TCGA-B0-5092-01A-01D-1421-08	15853037	128927880	114271493	9	9216											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141777522	141777522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	141777522	G	A	141777522	3	1	152	1	0	0	0	0	1	0	0	0	8962	1174	41	2	12180	2	LRP1B	2	141777522	Missense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08	12849642	141777522	101421851	10	9217											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179474417	179474417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	179474417	G	T	179474417	3	4	152	1	0	0	0	0	1	0	0	0	16747	1174	41	4	56324	4	TTN	2	179474417	Missense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08	37696895	179474417	63724956	11	9218											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52439913	52439913	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	52439913	G	A	52439913	4	1	152	1	0	0	0	0	0	1	0	0	1311	1386	48	2	1422	2	BAP1	3	52439913	Nonsense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08		52439913	145582517	12	9219											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu	37	3	52440295	52440295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	52440295	G	A	52440295	4	1	152	1	0	0	0	0	0	1	0	0	1311	1299	45	2	1468	2	BAP1	3	52440295	Nonsense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08	382	52440295	145582135	13	9220											
SORCS2	57537	broad.mit.edu;hgsc.bcm.edu	37	4	7533341	7533341	+	Silent	SNP	G	G	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	7533341	G	T	7533341	2	4	152	1	0	0	0	0	0	0	0	1	14944	1045	37	4		4	SORCS2	4	7533341	Silent	SNP	G	TCGA-B0-5092-01A-01D-1421-08		7533341	183620935	14	9221	101	2									
SORCS2	57537	broad.mit.edu	37	4	7533342	7533342	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	7533342	T	T	7533342	3	4	152	1	0	0	0	0	1	0	0	0	14944	275	10	5	644	5	SORCS2	4	7533342	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	1	7533342	183620934	15	9222	101	2									
UGT2A3	79799	broad.mit.edu;hgsc.bcm.edu	37	4	69795773	69795773	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	69795773	G	C	69795773	3	2	152	1	0	0	0	0	1	0	0	0	16967	1348	47	4	245	4	UGT2A3	4	69795773	Missense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08	62262431	69795773	121358503	16	9223											
FAT4	79633	broad.mit.edu;hgsc.bcm.edu	37	4	126398472	126398472	+	Silent	SNP	A	A	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	126398472	A	G	126398472	2	3	152	1	0	0	0	0	0	0	0	1	5699	146	6	3		3	FAT4	4	126398472	Silent	SNP	A	TCGA-B0-5092-01A-01D-1421-08	56602699	126398472	64755804	17	9224											
CDKN2AIP	55602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	184366710	184366710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	184366710	A	G	184366710	3	3	152	1	0	0	0	0	1	0	0	0	3164	363	13	3	301	3	CDKN2AIP	4	184366710	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	57968238	184366710	6787566	18	9225											
IRX1	79192	broad.mit.edu;hgsc.bcm.edu	37	5	3599934	3599934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	3599934	C	A	3599934	3	1	152	1	0	0	0	0	1	0	0	0	7850	652	23	4	878	4	IRX1	5	3599934	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08		3599934	177315326	19	9226											
TRIM23	373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	64892965	64892965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	64892965	C	T	64892965	3	4	152	1	0	0	0	0	1	0	0	0	16509	536	19	1	585	1	TRIM23	5	64892965	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	61293031	64892965	116022295	20	9227											
POC5	134359	broad.mit.edu	37	5	74981058	74981058	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	74981058	A	A	74981058	3	1	152	1	0	0	0	0	1	0	0	0	12184	710	25	4	358	4	POC5	5	74981058	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	10088093	74981058	105934202	21	9228											
GPRIN1	114787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176026768	176026768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	176026768	C	T	176026768	3	4	152	1	0	0	0	0	1	0	0	0	6736	884	31	1	2962	1	GPRIN1	5	176026768	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	101045710	176026768	4888492	22	9229											
EXOC2	55770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	532529	532529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	532529	A	G	532529	3	3	152	1	0	0	0	0	1	0	0	0	5304	304	11	3	478	3	EXOC2	6	532529	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08		532529	170582538	23	9230											
GCNT2	2651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	10529342	10529342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	10529342	A	T	10529342	3	4	152	1	0	0	0	0	1	0	0	0	6308	11	1	5	200	5	GCNT2	6	10529342	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	9996813	10529342	160585725	24	9231											
HIST1H3J	8356	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27858524	27858524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	27858524	G	A	27858524	3	1	152	1	0	0	0	0	1	0	0	0	7171	1319	46	2	367	2	HIST1H3J	6	27858524	Missense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08	17329182	27858524	143256543	25	9232											
ZNF165	7718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28053590	28053590	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	28053590	A	T	28053590	3	4	152	1	0	0	0	0	1	0	0	0	17752	246	9	5	334	5	ZNF165	6	28053590	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	195066	28053590	143061477	26	9233											
GPR63	81491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	97247000	97247000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	97247000	C	A	97247000	3	1	152	1	0	0	0	0	1	0	0	0	6711	595	21	4	655	4	GPR63	6	97247000	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	69193410	97247000	73868067	27	9234											
RAPGEF5	9771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	22165225	22165225	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	22165225	A	T	22165225	3	4	152	1	0	0	0	0	1	0	0	0	13060	43	2	5	126	5	RAPGEF5	7	22165225	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08		22165225	136973438	28	9235											
KIAA0895	23366	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	36396886	36396886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	36396886	C	A	36396886	3	1	152	1	0	0	0	0	1	0	0	0	8204	508	18	4	1090	4	KIAA0895	7	36396886	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	14231661	36396886	122741777	29	9236											
PLOD3	8985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100856398	100856398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	100856398	C	T	100856398	3	4	152	1	0	0	0	0	1	0	0	0	12110	507	18	2	1501	2	PLOD3	7	100856398	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	64459512	100856398	58282265	30	9237											
RELN	5649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	103293158	103293158	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	103293158	C	G	103293158	3	3	152	1	0	0	0	0	1	0	0	0	13233	710	25	4	8987	4	RELN	7	103293158	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	2436760	103293158	55845505	31	9238											
ST7	7982	broad.mit.edu	37	7	116870009	116870009	+	Silent	SNP	G	A	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	116870009	A	A	116870009	2	1	152	1	0	0	0	0	0	0	0	1	15241	1189	41	2		2	ST7	7	116870009	Silent	SNP	G	TCGA-B0-5092-01A-01D-1421-08	13576851	116870009	42268654	32	9239											
RP1L1	94137	broad.mit.edu;hgsc.bcm.edu	37	8	10468848	10468848	+	Silent	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	10468848	C	T	10468848	2	4	152	1	0	0	0	0	0	0	0	1	13546	610	22	2		2	RP1L1	8	10468848	Silent	SNP	C	TCGA-B0-5092-01A-01D-1421-08		10468848	135895174	33	9240											
PPAPDC1B	84513	broad.mit.edu	37	8	38125965	38125965	+	Silent	SNP	G	C	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	38125965	C	C	38125965	2	2	152	1	0	0	0	0	0	0	0	1	12301	929	33	4		4	PPAPDC1B	8	38125965	Silent	SNP	G	TCGA-B0-5092-01A-01D-1421-08	27657117	38125965	108238057	34	9241											
FGFR1	2260	broad.mit.edu;hgsc.bcm.edu	37	8	38275767	38275767	+	Missense_Mutation	SNP	C	C	G	rs121909637	alternate_allele	TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	38275767	C	G	38275767	3	3	152	1	0	0	0	0	1	0	0	0	5870	768	27	4	1095	4	FGFR1	8	38275767	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	149802	38275767	108088255	35	9242											
FAM110B	90362	broad.mit.edu	37	8	59059205	59059205	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	59059205	G	G	59059205	3	3	152	1	0	0	0	0	1	0	0	0	5401	159	6	3	418	3	FAM110B	8	59059205	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	20783438	59059205	87304817	36	9243											
PTAR1	375743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	72338284	72338284	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	72338284	A	T	72338284	3	4	152	1	0	0	0	0	1	0	0	0	12734	72	3	5	315	5	PTAR1	9	72338284	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08		72338284	68875147	37	9244											
RGS3	5998	broad.mit.edu;hgsc.bcm.edu	37	9	116346645	116346645	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	116346645	G	C	116346645	3	2	152	1	0	0	0	0	1	0	0	0	13319	943	33	4	3284	4	RGS3	9	116346645	Missense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08	44008361	116346645	24866786	38	9245											
FUBP3	8939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133485350	133485350	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	133485350	A	T	133485350	3	4	152	1	0	0	0	0	1	0	0	0	6100	188	7	5	210	5	FUBP3	9	133485350	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	17138705	133485350	7728081	39	9246											
AKR1C1	1645	broad.mit.edu;hgsc.bcm.edu	37	10	5011032	5011032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	5011032	G	T	5011032	3	4	152	1	0	0	0	0	1	0	0	0	469	942	33	4	484	4	AKR1C1	10	5011032	Missense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08		5011032	130523715	40	9247											
CAMK1D	57118	hgsc.bcm.edu;ucsc.edu	37	10	12833227	12833228	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	12833228	-	A	12833227	7	5	152	1	0	1	1	0	0	0	0	0	2599	489	17	0	658	0	CAMK1D	10	12833227	Frame_Shift_Ins	INS	-	TCGA-B0-5092-01A-01D-1421-08	7822195	12833227	122701520	41	9248											
CUZD1	50624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	124594540	124594540	+	Missense_Mutation	SNP	C	C	T	rs188322992	by1000genomes	TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	124594540	C	T	124594540	3	4	152	1	0	0	0	0	1	0	0	0	4068	536	19	1	771	1	CUZD1	10	124594540	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	111761313	124594540	10940207	42	9249											
TUB	7275	hgsc.bcm.edu	37	11	8111676	8111676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	8111676	A	T	8111676	3	4	152	1	0	0	0	0	1	0	0	0	16754	130	5	5	372	5	TUB	11	8111676	Missense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08		8111676	126894840	43	9250											
HIPK3	10114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	33363111	33363111	+	Silent	SNP	A	A	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	33363111	A	G	33363111	2	3	152	1	0	0	0	0	0	0	0	1	7125	204	8	3		3	HIPK3	11	33363111	Silent	SNP	A	TCGA-B0-5092-01A-01D-1421-08	25251435	33363111	101643405	44	9251											
SF3B2	10992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65827424	65827424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	65827424	C	T	65827424	3	4	152	1	0	0	0	0	1	0	0	0	14164	739	26	2	1623	2	SF3B2	11	65827424	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	32464313	65827424	69179092	45	9252											
FOLR4	390243	broad.mit.edu;ucsc.edu	37	11	94040428	94040428	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	94040428	A	A	94040428	3	1	152	1	0	0	0	0	1	0	0	0	5991	1319	46	2	435	2	FOLR4	11	94040428	Missense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08	28213004	94040428	40966088	46	9253											
DDX6	1656	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118656898	118656898	+	Silent	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	118656898	C	T	118656898	2	4	152	1	0	0	0	0	0	0	0	1	4379	813	29	2		2	DDX6	11	118656898	Silent	SNP	C	TCGA-B0-5092-01A-01D-1421-08	24616470	118656898	16349618	47	9254											
KLRC2	3822	broad.mit.edu;hgsc.bcm.edu	37	12	10588502	10588502	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	10588502	T	A	10588502	3	1	152	1	0	0	0	0	1	0	0	0	8423	1838	64	5	635	5	KLRC2	12	10588502	Missense_Mutation	SNP	T	TCGA-B0-5092-01A-01D-1421-08		10588502	123263393	48	9255											
NCKAP1L	3071	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54893217	54893217	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	54893217	A	T	54893217	4	4	152	1	0	0	0	0	0	1	0	0	10229	247	9	5	187	5	NCKAP1L	12	54893217	Nonsense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	44304715	54893217	78958678	49	9256											
PHLDA1	22822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	76424988	76424988	+	Silent	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	76424988	C	T	76424988	2	4	152	1	0	0	0	0	0	0	0	1	11855	726	26	2		2	PHLDA1	12	76424988	Silent	SNP	C	TCGA-B0-5092-01A-01D-1421-08	21531771	76424988	57426907	50	9257											
NT5DC3	51559	broad.mit.edu;hgsc.bcm.edu	37	12	104182685	104182685	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	104182685	C	G	104182685	3	3	152	1	0	0	0	0	1	0	0	0	10699	912	32	4	634	4	NT5DC3	12	104182685	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	27757697	104182685	29669210	51	9258											
RASAL1	8437	broad.mit.edu	37	12	113565939	113565939	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	113565939	A	A	113565939	3	1	152	1	0	0	0	0	1	0	0	0	13076	1551	54	5	2323	5	RASAL1	12	113565939	Missense_Mutation	SNP	T	TCGA-B0-5092-01A-01D-1421-08	9383254	113565939	20285956	52	9259											
CDADC1	81602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	49852533	49852533	+	Silent	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	49852533	C	T	49852533	2	4	152	1	0	0	0	0	0	0	0	1	3055	489	17	2		2	CDADC1	13	49852533	Silent	SNP	C	TCGA-B0-5092-01A-01D-1421-08		49852533	65317345	53	9260											
EIF2AK4	440275	hgsc.bcm.edu;ucsc.edu	37	15	40299258	40299258	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	-	40299258	T	-	40299258	7	5	152	1	0	1	0	1	0	0	0	0	5001	1490	52	0	3493	0	EIF2AK4	15	40299258	Frame_Shift_Del	DEL	T	TCGA-B0-5092-01A-01D-1421-08		40299258	62232134	54	9261											
TNRC6A	27327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	24788568	24788568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	24788568	G	A	24788568	3	1	152	1	0	0	0	0	1	0	0	0	16352	971	34	2	496	2	TNRC6A	16	24788568	Missense_Mutation	SNP	G	TCGA-B0-5092-01A-01D-1421-08		24788568	65566185	55	9262											
ATXN2L	11273	hgsc.bcm.edu;ucsc.edu	37	16	28847383	28847383	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	-	28847383	G	-	28847383	7	5	152	1	0	1	0	1	0	0	0	0	1212	1348	47	0	3111	0	ATXN2L	16	28847383	Frame_Shift_Del	DEL	G	TCGA-B0-5092-01A-01D-1421-08	4058815	28847383	61507370	56	9263											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7579396	7579396	+	Silent	SNP	G	G	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	7579396	G	A	7579396	2	1	152	1	0	0	0	0	0	0	0	1	16393	1161	41	2		2	TP53	17	7579396	Silent	SNP	G	TCGA-B0-5092-01A-01D-1421-08		7579396	73615814	57	9264											
SUZ12	23512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30302576	30302576	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	30302576	A	T	30302576	4	4	152	1	0	0	0	0	0	1	0	0	15428	15	1	5	693	5	SUZ12	17	30302576	Nonsense_Mutation	SNP	A	TCGA-B0-5092-01A-01D-1421-08	22723180	30302576	50892634	58	9265											
ACSF2	80221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48538731	48538731	+	Silent	SNP	G	G	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	48538731	G	C	48538731	2	2	152	1	0	0	0	0	0	0	0	1	175	1362	47	4		4	ACSF2	17	48538731	Silent	SNP	G	TCGA-B0-5092-01A-01D-1421-08	18236155	48538731	32656479	59	9266											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9065878	9065878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	9065878	T	C	9065878	3	2	152	1	0	0	0	0	1	0	0	0	9980	1580	55	3	22283	3	MUC16	19	9065878	Missense_Mutation	SNP	T	TCGA-B0-5092-01A-01D-1421-08		9065878	50063105	60	9267											
GPATCH1	55094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	33608751	33608751	+	Silent	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	33608751	C	T	33608751	2	4	152	1	0	0	0	0	0	0	0	1	6597	535	19	1		1	GPATCH1	19	33608751	Silent	SNP	C	TCGA-B0-5092-01A-01D-1421-08	24542873	33608751	25520232	61	9268											
SPEF1	25876	broad.mit.edu;hgsc.bcm.edu	37	20	3759097	3759097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	T	3759097	C	T	3759097	3	4	152	1	0	0	0	0	1	0	0	0	15046	864	30	2	144	2	SPEF1	20	3759097	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08		3759097	59266423	62	9269											
SFRS15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	33074643	33074643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	33074643	T	C	33074643	3	2	152	1	0	0	0	0	1	0	0	0	14184	1841	64	3	3136	3	SFRS15	21	33074643	Missense_Mutation	SNP	T	TCGA-B0-5092-01A-01D-1421-08		33074643	15055252	63	9270											
CBR1	873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37445149	37445149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	G	37445149	T	G	37445149	3	3	152	1	0	0	0	0	1	0	0	0	2710	1841	64	5	813	5	CBR1	21	37445149	Missense_Mutation	SNP	T	TCGA-B0-5092-01A-01D-1421-08	4370506	37445149	10684746	64	9271											
SLC5A1	6523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	32482294	32482294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	32482294	T	C	32482294	3	2	152	1	0	0	0	0	1	0	0	0	14674	1696	59	3	1147	3	SLC5A1	22	32482294	Missense_Mutation	SNP	T	TCGA-B0-5092-01A-01D-1421-08		32482294	18822272	65	9272											
TCF20	6942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42605745	42605745	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	42605745	T	A	42605745	3	1	152	1	0	0	0	0	1	0	0	0	15702	1551	54	5	353	5	TCF20	22	42605745	Missense_Mutation	SNP	T	TCGA-B0-5092-01A-01D-1421-08	10123451	42605745	8698821	66	9273	102	2									
TCF20	6942	broad.mit.edu;ucsc.edu	37	22	42605746	42605746	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	42605746	A	A	42605746	4	1	152	1	0	0	0	0	0	1	0	0	15702	835	29	4	354	4	TCF20	22	42605746	Nonsense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	1	42605746	8698820	67	9274	102	2									
FBLN1	2192	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45929741	45929741	+	Silent	SNP	G	G	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	45929741	G	A	45929741	2	1	152	1	0	0	0	0	0	0	0	1	5705	1161	41	2		2	FBLN1	22	45929741	Silent	SNP	G	TCGA-B0-5092-01A-01D-1421-08	3323995	45929741	5374825	68	9275											
WNK3	65267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	54321069	54321069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	C	54321069	T	C	54321069	3	2	152	1	0	0	0	0	1	0	0	0	17391	1783	62	3	3860	3	WNK3	23	54321069	Missense_Mutation	SNP	T	TCGA-B0-5092-01A-01D-1421-08		54321069	100949491	69	9276											
TSPAN6	7105	broad.mit.edu	37	X	99890219	99890219	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	99890219	A	A	99890219	3	1	152	1	0	0	0	0	1	0	0	0	16663	507	18	4	450	4	TSPAN6	23	99890219	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	45569150	99890219	55380341	70	9277	103	2									
TSPAN6	7105	broad.mit.edu;hgsc.bcm.edu	37	X	99890220	99890220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5092-01A-01D-1421-08	TCGA-B0-5092-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76b9d9e3-6010-4894-8435-debe95a376b5	36ee6525-023c-42c2-a752-38bc55af5aba	A	99890220	C	A	99890220	3	1	152	1	0	0	0	0	1	0	0	0	16663	593	21	4	451	4	TSPAN6	23	99890220	Missense_Mutation	SNP	C	TCGA-B0-5092-01A-01D-1421-08	1	99890220	55380340	71	9278	103	2									
PTCHD2	57540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11594491	11594491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	11594491	G	T	11594491	3	4	153	1	0	0	0	0	1	0	0	0	12743	1241	43	4	3495	4	PTCHD2	1	11594491	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08		11594491	237656130	1	9279											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19482023	19482023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	19482023	T	C	19482023	3	2	153	1	0	0	0	0	1	0	0	0	16916	1406	49	3	9595	3	UBR4	1	19482023	Missense_Mutation	SNP	T	TCGA-B0-5094-01A-01D-1421-08	7887532	19482023	229768598	2	9280											
HIVEP3	59269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	42045713	42045713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	42045713	C	T	42045713	3	4	153	1	0	0	0	0	1	0	0	0	7195	681	24	2	2488	2	HIVEP3	1	42045713	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	22563690	42045713	207204908	3	9281											
MCOLN3	55283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	85491737	85491737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	85491737	T	C	85491737	3	2	153	1	0	0	0	0	1	0	0	0	9404	1609	56	3	701	3	MCOLN3	1	85491737	Missense_Mutation	SNP	T	TCGA-B0-5094-01A-01D-1421-08	43446024	85491737	163758884	4	9282											
NOTCH2	4853	broad.mit.edu;hgsc.bcm.edu	37	1	120464896	120464896	+	Silent	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	120464896	G	A	120464896	2	1	153	1	0	0	0	0	0	0	0	1	10555	1087	38	1		1	NOTCH2	1	120464896	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08	34973159	120464896	128785725	5	9283											
NR1I3	9970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161200669	161200669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	161200669	A	T	161200669	3	4	153	1	0	0	0	0	1	0	0	0	10628	188	7	5	298	5	NR1I3	1	161200669	Missense_Mutation	SNP	A	TCGA-B0-5094-01A-01D-1421-08	40735773	161200669	88049952	6	9284											
C1orf114	57821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169391258	169391258	+	Silent	SNP	A	A	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	169391258	A	G	169391258	2	3	153	1	0	0	0	0	0	0	0	1	1989	233	9	3		3	C1orf114	1	169391258	Silent	SNP	A	TCGA-B0-5094-01A-01D-1421-08	8190589	169391258	79859363	7	9285											
RNASEL	6041	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	182551344	182551344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	182551344	A	G	182551344	3	3	153	1	0	0	0	0	1	0	0	0	13429	14	1	3	625	3	RNASEL	1	182551344	Missense_Mutation	SNP	A	TCGA-B0-5094-01A-01D-1421-08	13160086	182551344	66699277	8	9286											
LAMC2	3918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183194784	183194784	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	183194784	G	C	183194784	3	2	153	1	0	0	0	0	1	0	0	0	8622	1029	36	4	1025	4	LAMC2	1	183194784	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	643440	183194784	66055837	9	9287											
SERTAD4	56256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	210412917	210412917	+	Silent	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	210412917	G	A	210412917	2	1	153	1	0	0	0	0	0	0	0	1	14136	991	35	2		2	SERTAD4	1	210412917	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08	27218133	210412917	38837704	10	9288											
USH2A	7399	broad.mit.edu;hgsc.bcm.edu	37	1	216595423	216595423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	216595423	G	T	216595423	3	4	153	1	0	0	0	0	1	0	0	0	17048	1299	45	4	15650	4	USH2A	1	216595423	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	6182506	216595423	32655198	11	9289											
GJC2	57165	broad.mit.edu	37	1	228346349	228346349	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	228346349	T	T	228346349	3	4	153	1	0	0	0	0	1	0	0	0	6422	768	27	1	892	1	GJC2	1	228346349	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	11750926	228346349	20904272	12	9290											
CPSF3	51692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	9588441	9588441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	9588441	G	A	9588441	3	1	153	1	0	0	0	0	1	0	0	0	3828	971	34	2	1399	2	CPSF3	2	9588441	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08		9588441	233610932	13	9291											
LOXL3	84695	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	74763177	74763177	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	74763177	A	C	74763177	3	2	153	1	0	0	0	0	1	0	0	0	8908	446	16	5	1099	5	LOXL3	2	74763177	Missense_Mutation	SNP	A	TCGA-B0-5094-01A-01D-1421-08	65174736	74763177	168436196	14	9292											
RAB3GAP1	22930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	135926185	135926185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	135926185	C	A	135926185	3	1	153	1	0	0	0	0	1	0	0	0	12948	855	30	4	2899	4	RAB3GAP1	2	135926185	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	61163008	135926185	107273188	15	9293											
EVX2	344191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	176948341	176948341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	176948341	G	A	176948341	3	1	153	1	0	0	0	0	1	0	0	0	5297	942	33	2	1276	2	EVX2	2	176948341	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	41022156	176948341	66251032	16	9294											
TTN	7273	broad.mit.edu;hgsc.bcm.edu	37	2	179441300	179441300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	179441300	G	A	179441300	3	1	153	1	0	0	0	0	1	0	0	0	16747	1348	47	2	38460	2	TTN	2	179441300	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	2492959	179441300	63758073	17	9295											
CRYGB	1419	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	209007477	209007477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	209007477	G	C	209007477	3	2	153	1	0	0	0	0	1	0	0	0	3917	1232	43	4	118	4	CRYGB	2	209007477	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	29566177	209007477	34191896	18	9296											
PASK	23178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	242063382	242063382	+	Silent	SNP	G	G	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	242063382	G	C	242063382	2	2	153	1	0	0	0	0	0	0	0	1	11479	1103	39	4		4	PASK	2	242063382	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08	33055905	242063382	1135991	19	9297											
ALS2CL	259173	broad.mit.edu;ucsc.edu	37	3	46721931	46721931	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	46721931	A	A	46721931	3	1	153	1	0	0	0	0	1	0	0	0	551	855	30	4	1376	4	ALS2CL	3	46721931	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08		46721931	151300499	20	9298											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52588877	52588877	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	-	52588877	G	-	52588877	7	5	153	1	0	1	0	1	0	0	0	0	11498	1116	39	0	613	0	PBRM1	3	52588877	Frame_Shift_Del	DEL	G	TCGA-B0-5094-01A-01D-1421-08	5866946	52588877	145433553	21	9299											
ZBBX	79740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	166958709	166958709	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	166958709	T	A	166958709	5	1	153	1	0	0	0	0	0	0	1	0	17528	1594	55	5	131	5	ZBBX	3	166958709	Splice_Site	SNP	T	TCGA-B0-5094-01A-01D-1421-08	114369832	166958709	31063721	22	9300											
ACOX3	8310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	8394072	8394072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	8394072	C	T	8394072	3	4	153	1	0	0	0	0	1	0	0	0	160	652	23	1	846	1	ACOX3	4	8394072	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08		8394072	182760204	23	9301											
TLR6	10333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	38830418	38830418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	38830418	G	T	38830418	3	4	153	1	0	0	0	0	1	0	0	0	15967	1029	36	4	1717	4	TLR6	4	38830418	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	30436346	38830418	152323858	24	9302											
RFC1	5981	hgsc.bcm.edu;ucsc.edu	37	4	39328257	39328258	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	-	39328258	AA	-	39328257	7	5	153	1	0	1	0	1	0	0	0	0	13257	246	9	0	2955	0	RFC1	4	39328257	Frame_Shift_Del	DEL	AA	TCGA-B0-5094-01A-01D-1421-08	497839	39328257	151826019	25	9303											
RUFY3	22902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71634345	71634345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	71634345	T	G	71634345	3	3	153	1	0	0	0	0	1	0	0	0	13753	1490	52	5	1043	5	RUFY3	4	71634345	Missense_Mutation	SNP	T	TCGA-B0-5094-01A-01D-1421-08	32306088	71634345	119519931	26	9304											
DMGDH	29958	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	78359437	78359437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	78359437	G	T	78359437	3	4	153	1	0	0	0	0	1	0	0	0	4583	1333	46	4	2385	4	DMGDH	5	78359437	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08		78359437	102555823	27	9305											
RASA1	5921	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	86674302	86674302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	86674302	C	T	86674302	3	4	153	1	0	0	0	0	1	0	0	0	13073	826	29	2	2516	2	RASA1	5	86674302	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	8314865	86674302	94240958	28	9306											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56484745	56484745	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	56484745	C	A	56484745	4	1	153	1	0	0	0	0	0	1	0	0	4785	922	32	4	16316	4	DST	6	56484745	Nonsense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08		56484745	114630322	29	9307											
DOPEY1	23033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	83838711	83838711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	83838711	C	G	83838711	3	3	153	1	0	0	0	0	1	0	0	0	4709	827	29	4	1879	4	DOPEY1	6	83838711	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	27353966	83838711	87276356	30	9308											
THBS2	7058	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	169634969	169634969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	169634969	G	A	169634969	3	1	153	1	0	0	0	0	1	0	0	0	15866	1059	37	1	2059	1	THBS2	6	169634969	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	85796258	169634969	1480098	31	9309											
DFNA5	1687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	24758693	24758693	+	Silent	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	24758693	G	A	24758693	2	1	153	1	0	0	0	0	0	0	0	1	4456	1048	37	1		1	DFNA5	7	24758693	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08		24758693	134379970	32	9310											
CDK14	5218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	90355879	90355879	+	Splice_Site	SNP	A	A	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	90355879	A	T	90355879	5	4	153	1	0	0	0	0	0	0	1	0	3132	202	7	5	74	5	CDK14	7	90355879	Splice_Site	SNP	A	TCGA-B0-5094-01A-01D-1421-08	65597186	90355879	68782784	33	9311											
SLC25A13	10165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	95776002	95776002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	95776002	C	T	95776002	3	4	153	1	0	0	0	0	1	0	0	0	14488	681	24	2	729	2	SLC25A13	7	95776002	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	5420123	95776002	63362661	34	9312											
MYL10	93408	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	101256829	101256829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	101256829	G	A	101256829	3	1	153	1	0	0	0	0	1	0	0	0	10051	1174	41	2	77	2	MYL10	7	101256829	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	5480827	101256829	57881834	35	9313											
CHRM2	1129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	136700642	136700642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	136700642	G	A	136700642	3	1	153	1	0	0	0	0	1	0	0	0	3379	1145	40	1	1032	1	CHRM2	7	136700642	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	35443813	136700642	22438021	36	9314											
XKR4	114786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	56436707	56436707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	56436707	G	A	56436707	3	1	153	1	0	0	0	0	1	0	0	0	17445	1377	48	2	1884	2	XKR4	8	56436707	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08		56436707	89927315	37	9315											
RALYL	138046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	85774642	85774642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	85774642	G	A	85774642	3	1	153	1	0	0	0	0	1	0	0	0	13033	1290	45	2	586	2	RALYL	8	85774642	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	29337935	85774642	60589380	38	9316											
VPS13B	157680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	100515083	100515083	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	100515083	A	T	100515083	3	4	153	1	0	0	0	0	1	0	0	0	17202	40	2	5	4287	5	VPS13B	8	100515083	Missense_Mutation	SNP	A	TCGA-B0-5094-01A-01D-1421-08	14740441	100515083	45848939	39	9317											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110502193	110502193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	110502193	T	G	110502193	3	3	153	1	0	0	0	0	1	0	0	0	11979	1406	49	5	10131	5	PKHD1L1	8	110502193	Missense_Mutation	SNP	T	TCGA-B0-5094-01A-01D-1421-08	9987110	110502193	35861829	40	9318											
AMBP	259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	116840415	116840415	+	Silent	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	116840415	C	T	116840415	2	4	153	1	0	0	0	0	0	0	0	1	564	755	27	1		1	AMBP	9	116840415	Silent	SNP	C	TCGA-B0-5094-01A-01D-1421-08		116840415	24373016	41	9319											
SLC34A3	142680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	140129157	140129157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	140129157	G	A	140129157	3	1	153	1	0	0	0	0	1	0	0	0	14582	1087	38	1	1351	1	SLC34A3	9	140129157	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	23288742	140129157	1084274	42	9320											
FBXO18	84893	hgsc.bcm.edu;ucsc.edu	37	10	5953065	5953070	+	In_Frame_Del	DEL	GGAGAA	GGAGAA	-	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	GGAGAA	GGAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	-	5953070	GGAGAA	-	5953065	7	5	153	1	0	1	0	1	0	0	0	0	5738	1223	43	0	1369	0	FBXO18	10	5953065	In_Frame_Del	DEL	GGAGAA	TCGA-B0-5094-01A-01D-1421-08		5953065	129581682	43	9321											
PRKCQ	5588	hgsc.bcm.edu;ucsc.edu	37	10	6553149	6553149	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	-	6553149	C	-	6553149	7	5	153	1	0	1	0	1	0	0	0	0	12525	726	26	0	2058	0	PRKCQ	10	6553149	Frame_Shift_Del	DEL	C	TCGA-B0-5094-01A-01D-1421-08	600084	6553149	128981598	44	9322											
ARMC4	55130	hgsc.bcm.edu	37	10	28250531	28250532	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	28250532	-	A	28250531	7	5	153	1	0	1	1	0	0	0	0	0	953	1406	49	0	1826	0	ARMC4	10	28250531	Frame_Shift_Ins	INS	-	TCGA-B0-5094-01A-01D-1421-08	21697382	28250531	107284216	45	9323											
C10orf129	142827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96967148	96967148	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	96967148	G	A	96967148	4	1	153	1	0	0	0	0	0	1	0	0	1595	1357	47	2	597	2	C10orf129	10	96967148	Nonsense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	68716617	96967148	38567599	46	9324											
ODF3	113746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	199997	199997	+	Silent	SNP	T	T	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	199997	T	C	199997	2	2	153	1	0	0	0	0	0	0	0	1	10836	1567	55	3		3	ODF3	11	199997	Silent	SNP	T	TCGA-B0-5094-01A-01D-1421-08		199997	134806519	47	9325											
OR52B4	143496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4389154	4389154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	4389154	G	C	4389154	3	2	153	1	0	0	0	0	1	0	0	0	11119	1020	36	4	576	4	OR52B4	11	4389154	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	4189157	4389154	130617362	48	9326											
NR1H3	10062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47283271	47283271	+	Silent	SNP	G	G	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	47283271	G	C	47283271	2	2	153	1	0	0	0	0	0	0	0	1	10625	1045	37	4		4	NR1H3	11	47283271	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08	42894117	47283271	87723245	49	9327											
C1QTNF4	114900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47611595	47611595	+	Silent	SNP	G	G	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	47611595	G	C	47611595	2	2	153	1	0	0	0	0	0	0	0	1	1967	1335	47	4		4	C1QTNF4	11	47611595	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08	328324	47611595	87394921	50	9328											
SYT7	9066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61295625	61295625	+	Silent	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	61295625	G	A	61295625	2	1	153	1	0	0	0	0	0	0	0	1	15491	1136	40	1		1	SYT7	11	61295625	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08	13684030	61295625	73710891	51	9329											
BEST1	7439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61727371	61727371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	61727371	T	C	61727371	3	2	153	1	0	0	0	0	1	0	0	0	1404	1580	55	3	986	3	BEST1	11	61727371	Missense_Mutation	SNP	T	TCGA-B0-5094-01A-01D-1421-08	431746	61727371	73279145	52	9330											
ODZ4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	78380861	78380861	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	78380861	C	G	78380861	3	3	153	1	0	0	0	0	1	0	0	0	10844	565	20	4	1792	4	ODZ4	11	78380861	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	16653490	78380861	56625655	53	9331											
CBL	867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119168096	119168096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	119168096	C	T	119168096	3	4	153	1	0	0	0	0	1	0	0	0	2702	710	25	2	2210	2	CBL	11	119168096	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	40787235	119168096	15838420	54	9332											
TECTA	7007	broad.mit.edu	37	11	121016494	121016494	+	Silent	SNP	G	T	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	121016494	T	T	121016494	2	4	153	1	0	0	0	0	0	0	0	1	15759	1306	46	4		4	TECTA	11	121016494	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08	1848398	121016494	13990022	55	9333											
KDM5A	5927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	442697	442697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	442697	C	T	442697	3	4	153	1	0	0	0	0	1	0	0	0	8140	565	20	2	3531	2	KDM5A	12	442697	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08		442697	133409198	56	9334											
SCNN1A	6337	broad.mit.edu;hgsc.bcm.edu	37	12	6463640	6463640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	6463640	C	T	6463640	3	4	153	1	0	0	0	0	1	0	0	0	13940	536	19	1	709	1	SCNN1A	12	6463640	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	6020943	6463640	127388255	57	9335											
RIMKLB	57494	broad.mit.edu;hgsc.bcm.edu	37	12	8902521	8902521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	8902521	C	T	8902521	3	4	153	1	0	0	0	0	1	0	0	0	13379	507	18	2	245	2	RIMKLB	12	8902521	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	2438881	8902521	124949374	58	9336											
KIAA1467	57613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	13233561	13233561	+	Missense_Mutation	SNP	C	C	G	rs192853755	by1000genomes	TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	13233561	C	G	13233561	3	3	153	1	0	0	0	0	1	0	0	0	8242	903	32	4	1916	4	KIAA1467	12	13233561	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	4331040	13233561	120618334	59	9337											
CTDSP2	10106	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	58217389	58217389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	58217389	G	T	58217389	3	4	153	1	0	0	0	0	1	0	0	0	4006	1000	35	4	7	4	CTDSP2	12	58217389	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	44983828	58217389	75634506	60	9338											
LIN7A	8825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	81239638	81239638	+	Silent	SNP	A	A	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	81239638	A	T	81239638	2	4	153	1	0	0	0	0	0	0	0	1	8817	117	5	5		5	LIN7A	12	81239638	Silent	SNP	A	TCGA-B0-5094-01A-01D-1421-08	23022249	81239638	52612257	61	9339											
ANKLE2	23141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133331594	133331594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	133331594	C	G	133331594	3	3	153	1	0	0	0	0	1	0	0	0	633	835	29	4	2557	4	ANKLE2	12	133331594	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	52091956	133331594	520301	62	9340											
RALGAPA1	253959	broad.mit.edu;hgsc.bcm.edu	37	14	36104763	36104763	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	36104763	C	G	36104763	3	3	153	1	0	0	0	0	1	0	0	0	13026	594	21	4	2103	4	RALGAPA1	14	36104763	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08		36104763	71244777	63	9341											
SYNE2	23224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64568741	64568741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	64568741	C	T	64568741	3	4	153	1	0	0	0	0	1	0	0	0	15458	855	30	2	12723	2	SYNE2	14	64568741	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	28463978	64568741	42780799	64	9342											
VPS18	57617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41194909	41194909	+	Silent	SNP	G	G	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	41194909	G	T	41194909	2	4	153	1	0	0	0	0	0	0	0	1	17206	1306	46	4		4	VPS18	15	41194909	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08		41194909	61336483	65	9343											
TELO2	9894	broad.mit.edu	37	16	1557648	1557648	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	1557648	C	C	1557648	3	2	153	1	0	0	0	0	1	0	0	0	15769	188	7	5	2412	5	TELO2	16	1557648	Missense_Mutation	SNP	A	TCGA-B0-5094-01A-01D-1421-08		1557648	88797105	66	9344											
C16orf75	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	11444604	11444604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	11444604	T	C	11444604	3	2	153	1	0	0	0	0	1	0	0	0	1836	1464	51	3	407	3	C16orf75	16	11444604	Missense_Mutation	SNP	T	TCGA-B0-5094-01A-01D-1421-08	9886956	11444604	78910149	67	9345											
ATXN2L	11273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28847661	28847661	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	28847661	A	T	28847661	4	4	153	1	0	0	0	0	0	1	0	0	1212	180	7	5	3333	5	ATXN2L	16	28847661	Nonsense_Mutation	SNP	A	TCGA-B0-5094-01A-01D-1421-08	17403057	28847661	61507092	68	9346											
SALL1	6299	hgsc.bcm.edu	37	16	51175664	51175664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	51175664	T	C	51175664	3	2	153	1	0	0	0	0	1	0	0	0	13823	1580	55	3	3513	3	SALL1	16	51175664	Missense_Mutation	SNP	T	TCGA-B0-5094-01A-01D-1421-08	22328003	51175664	39179089	69	9347											
GNAO1	2775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	56309956	56309956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	56309956	G	A	56309956	3	1	153	1	0	0	0	0	1	0	0	0	6515	1203	42	2	285	2	GNAO1	16	56309956	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	5134292	56309956	34044797	70	9348											
C18orf8	29919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	21084363	21084363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	21084363	C	T	21084363	3	4	153	1	0	0	0	0	1	0	0	0	1909	565	20	2	137	2	C18orf8	18	21084363	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08		21084363	56992885	71	9349											
ABCA7	10347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1048966	1048966	+	Missense_Mutation	SNP	A	A	T	rs145106069	alternate_allele	TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	1048966	A	T	1048966	3	4	153	1	0	0	0	0	1	0	0	0	37	72	3	5	2404	5	ABCA7	19	1048966	Missense_Mutation	SNP	A	TCGA-B0-5094-01A-01D-1421-08		1048966	58080017	72	9350											
NCLN	56926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3192504	3192504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	3192504	C	T	3192504	3	4	153	1	0	0	0	0	1	0	0	0	10234	536	19	1	227	1	NCLN	19	3192504	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	2143538	3192504	55936479	73	9351											
INSR	3643	broad.mit.edu;hgsc.bcm.edu	37	19	7152929	7152929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	7152929	A	G	7152929	3	3	153	1	0	0	0	0	1	0	0	0	7780	188	7	3	2161	3	INSR	19	7152929	Missense_Mutation	SNP	A	TCGA-B0-5094-01A-01D-1421-08	3960425	7152929	51976054	74	9352											
GDF15	9518	broad.mit.edu;hgsc.bcm.edu	37	19	18499472	18499472	+	Silent	SNP	G	G	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	18499472	G	T	18499472	2	4	153	1	0	0	0	0	0	0	0	1	6320	1132	40	4		4	GDF15	19	18499472	Silent	SNP	G	TCGA-B0-5094-01A-01D-1421-08	11346543	18499472	40629511	75	9353											
PRX	57716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40900919	40900919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	40900919	C	A	40900919	3	1	153	1	0	0	0	0	1	0	0	0	12652	623	22	4	1049	4	PRX	19	40900919	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	22401447	40900919	18228064	76	9354											
B3GNT8	374907	broad.mit.edu;hgsc.bcm.edu	37	19	41931921	41931921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	41931921	C	T	41931921	3	4	153	1	0	0	0	0	1	0	0	0	1263	710	25	2	434	2	B3GNT8	19	41931921	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	1031002	41931921	17197062	77	9355											
MAFB	9935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39317054	39317054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	39317054	G	A	39317054	3	1	153	1	0	0	0	0	1	0	0	0	9165	1116	39	1	538	1	MAFB	20	39317054	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08		39317054	23708466	78	9356											
ZNFX1	57169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47886935	47886935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	C	47886935	T	C	47886935	3	2	153	1	0	0	0	0	1	0	0	0	18217	1579	55	3	4390	3	ZNFX1	20	47886935	Missense_Mutation	SNP	T	TCGA-B0-5094-01A-01D-1421-08	8569881	47886935	15138585	79	9357											
NRIP1	8204	hgsc.bcm.edu	37	21	16338779	16338779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	16338779	A	T	16338779	3	4	153	1	0	0	0	0	1	0	0	0	10659	246	9	5	1745	5	NRIP1	21	16338779	Missense_Mutation	SNP	A	TCGA-B0-5094-01A-01D-1421-08		16338779	31791116	80	9358											
RFPL3	10738	hgsc.bcm.edu	37	22	32754354	32754355	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	G	32754355	-	G	32754354	7	5	153	1	0	1	1	0	0	0	0	0	13268	1580	55	0	298	0	RFPL3	22	32754354	Frame_Shift_Ins	INS	-	TCGA-B0-5094-01A-01D-1421-08		32754354	18550212	81	9359											
KLHDC7B	113730	broad.mit.edu;hgsc.bcm.edu	37	22	50987493	50987493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	50987493	C	A	50987493	3	1	153	1	0	0	0	0	1	0	0	0	8368	623	22	4	900	4	KLHDC7B	22	50987493	Missense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08	18233139	50987493	317073	82	9360											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu	37	X	53227796	53227796	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	A	53227796	C	A	53227796	4	1	153	1	0	0	0	0	0	1	0	0	8142	922	32	4	2428	4	KDM5C	23	53227796	Nonsense_Mutation	SNP	C	TCGA-B0-5094-01A-01D-1421-08		53227796	102042764	83	9361											
AIFM1	9131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129265667	129265667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5094-01A-01D-1421-08	TCGA-B0-5094-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8b910c03-86a9-488d-80b4-1f8c214c2941	b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47	T	129265667	G	T	129265667	3	4	153	1	0	0	0	0	1	0	0	0	426	942	33	4	297	4	AIFM1	23	129265667	Missense_Mutation	SNP	G	TCGA-B0-5094-01A-01D-1421-08	76037871	129265667	26004893	84	9362											
TIE1	7075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43773140	43773140	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	43773140	G	C	43773140	3	2	154	1	0	0	0	0	1	0	0	0	15905	962	34	4	832	4	TIE1	1	43773140	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08		43773140	205477481	1	9363											
SLAMF7	57823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160719769	160719769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	G	160719769	A	G	160719769	3	3	154	1	0	0	0	0	1	0	0	0	14382	217	8	3	545	3	SLAMF7	1	160719769	Missense_Mutation	SNP	A	TCGA-B0-5095-01A-01D-1421-08	116946629	160719769	88530852	2	9364											
C1orf112	55732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169773348	169773348	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	169773348	G	C	169773348	3	2	154	1	0	0	0	0	1	0	0	0	1987	942	33	4	459	4	C1orf112	1	169773348	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	9053579	169773348	79477273	3	9365											
OR2G2	81470	broad.mit.edu;ucsc.edu	37	1	247752478	247752478	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	247752478	A	A	247752478	3	1	154	1	0	0	0	0	1	0	0	0	11005	595	21	4	819	4	OR2G2	1	247752478	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08	77979130	247752478	1498143	4	9366											
OR2W3	343171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	248059809	248059809	+	Silent	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	248059809	G	A	248059809	2	1	154	1	0	0	0	0	0	0	0	1	11040	1161	41	2		2	OR2W3	1	248059809	Silent	SNP	G	TCGA-B0-5095-01A-01D-1421-08	307331	248059809	1190812	5	9367											
CAD	790	hgsc.bcm.edu;ucsc.edu	37	2	27454852	27454853	+	In_Frame_Ins	INS	-	-	GGA	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	GGA	27454853	-	GGA	27454852	7	5	154	1	0	1	1	0	0	0	0	0	2567	1821	63	0	2471	0	CAD	2	27454852	In_Frame_Ins	INS	-	TCGA-B0-5095-01A-01D-1421-08		27454852	215744521	6	9368											
THADA	63892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	43800089	43800089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	43800089	C	A	43800089	3	1	154	1	0	0	0	0	1	0	0	0	15852	681	24	4	4197	4	THADA	2	43800089	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08	16345237	43800089	199399284	7	9369											
KLRAQ1	0	broad.mit.edu;hgsc.bcm.edu	37	2	48681713	48681713	+	RNA	SNP	T	T	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	48681713	T	C	48681713	1	2	154	0	1	0	0	0	0	0	0	0	8420	1450	50	3		3	KLRAQ1	2	48681713	RNA	SNP	T	TCGA-B0-5095-01A-01D-1421-08	4881624	48681713	194517660	8	9370											
NEB	4703	broad.mit.edu	37	2	152346999	152346999	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	152346999	T	T	152346999	3	4	154	1	0	0	0	0	1	0	0	0	10309	884	31	1	405	1	NEB	2	152346999	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08	103665286	152346999	90852374	9	9371											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10191470	10191470	+	Splice_Site	SNP	G	C	C	rs5030817	alternate_allele	TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	10191470	C	C	10191470	5	2	154	1	0	0	0	0	0	0	1	0	17174	1043	36	4	473	4	VHL	3	10191470	Splice_Site	SNP	G	TCGA-B0-5095-01A-01D-1421-08		10191470	187830960	10	9372											
FBLN2	2199	broad.mit.edu	37	3	13649672	13649672	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	G	13649672	G	G	13649672	3	3	154	1	0	0	0	0	1	0	0	0	5706	202	7	3	113	3	FBLN2	3	13649672	Missense_Mutation	SNP	A	TCGA-B0-5095-01A-01D-1421-08	3458202	13649672	184372758	11	9373											
CMC1	152100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	28361101	28361101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	G	28361101	A	G	28361101	3	3	154	1	0	0	0	0	1	0	0	0	3579	72	3	3	316	3	CMC1	3	28361101	Missense_Mutation	SNP	A	TCGA-B0-5095-01A-01D-1421-08	14711429	28361101	169661329	12	9374											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52437782	52437782	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	52437782	G	C	52437782	4	2	154	1	0	0	0	0	0	1	0	0	1311	1294	45	4	830	4	BAP1	3	52437782	Nonsense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	24076681	52437782	145584648	13	9375											
EAF2	55840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121591511	121591511	+	Silent	SNP	C	C	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	121591511	C	A	121591511	2	1	154	1	0	0	0	0	0	0	0	1	4878	668	24	4		4	EAF2	3	121591511	Silent	SNP	C	TCGA-B0-5095-01A-01D-1421-08	69153729	121591511	76430919	14	9376											
ANKRD17	26057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	73979600	73979600	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	G	73979600	C	G	73979600	3	3	154	1	0	0	0	0	1	0	0	0	646	478	17	4	3545	4	ANKRD17	4	73979600	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08		73979600	117174676	15	9377											
TMEM184C	55751	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	148545244	148545244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	148545244	G	A	148545244	3	1	154	1	0	0	0	0	1	0	0	0	16118	942	33	2	296	2	TMEM184C	4	148545244	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	74565644	148545244	42609032	16	9378											
CDKN2AIP	55602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	184367368	184367368	+	Silent	SNP	G	G	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	184367368	G	C	184367368	2	2	154	1	0	0	0	0	0	0	0	1	3164	1132	40	4		4	CDKN2AIP	4	184367368	Silent	SNP	G	TCGA-B0-5095-01A-01D-1421-08	35822124	184367368	6786908	17	9379											
GDF9	2661	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	132197841	132197841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	132197841	C	T	132197841	3	4	154	1	0	0	0	0	1	0	0	0	6326	826	29	2	563	2	GDF9	5	132197841	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08		132197841	48717419	18	9380											
GFRA3	2676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137593484	137593484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	137593484	G	A	137593484	3	1	154	1	0	0	0	0	1	0	0	0	6356	1232	43	2	593	2	GFRA3	5	137593484	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	5395643	137593484	43321776	19	9381											
NR3C1	2908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	142779613	142779613	+	Silent	SNP	A	A	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	142779613	A	C	142779613	2	2	154	1	0	0	0	0	0	0	0	1	10637	1	1	5		5	NR3C1	5	142779613	Silent	SNP	A	TCGA-B0-5095-01A-01D-1421-08	5186129	142779613	38135647	20	9382											
GABRA1	2554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	161302567	161302567	+	Silent	SNP	C	C	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	161302567	C	T	161302567	2	4	154	1	0	0	0	0	0	0	0	1	6167	811	28	2		2	GABRA1	5	161302567	Silent	SNP	C	TCGA-B0-5095-01A-01D-1421-08	18522954	161302567	19612693	21	9383											
ODZ2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	167687305	167687305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	167687305	G	A	167687305	3	1	154	1	0	0	0	0	1	0	0	0	10842	1377	48	2	7533	2	ODZ2	5	167687305	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	6384738	167687305	13227955	22	9384											
STC2	8614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	172755100	172755100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	172755100	C	A	172755100	3	1	154	1	0	0	0	0	1	0	0	0	15288	623	22	4	827	4	STC2	5	172755100	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08	5067795	172755100	8160160	23	9385											
PRELID1	27166	broad.mit.edu;hgsc.bcm.edu	37	5	176731056	176731056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	176731056	C	A	176731056	3	1	154	1	0	0	0	0	1	0	0	0	12481	711	25	4	72	4	PRELID1	5	176731056	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08	3975956	176731056	4184204	24	9386											
TBC1D9B	23061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179301968	179301968	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	179301968	A	T	179301968	3	4	154	1	0	0	0	0	1	0	0	0	15640	188	7	5	1676	5	TBC1D9B	5	179301968	Missense_Mutation	SNP	A	TCGA-B0-5095-01A-01D-1421-08	2570912	179301968	1613292	25	9387											
SLC29A1	2030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44198152	44198152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	44198152	C	T	44198152	3	4	154	1	0	0	0	0	1	0	0	0	14547	623	22	2	541	2	SLC29A1	6	44198152	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08		44198152	126916915	26	9388											
TDRD6	221400	broad.mit.edu	37	6	46656688	46656688	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	46656688	T	T	46656688	4	4	154	1	0	0	0	0	0	1	0	0	15746	1175	41	4	825	4	TDRD6	6	46656688	Nonsense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	2458536	46656688	124458379	27	9389											
FYN	2534	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	111983021	111983021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	111983021	G	T	111983021	3	4	154	1	0	0	0	0	1	0	0	0	6133	1029	36	4	82	4	FYN	6	111983021	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	65326333	111983021	59132046	28	9390											
SAMD3	154075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	130465867	130465867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	130465867	T	A	130465867	3	1	154	1	0	0	0	0	1	0	0	0	13833	1551	54	5	205	5	SAMD3	6	130465867	Missense_Mutation	SNP	T	TCGA-B0-5095-01A-01D-1421-08	18482846	130465867	40649200	29	9391											
GUSB	2990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	65439619	65439619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	65439619	C	T	65439619	3	4	154	1	0	0	0	0	1	0	0	0	6909	768	27	1	841	1	GUSB	7	65439619	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08		65439619	93699044	30	9392											
EXOC4	60412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	133689775	133689775	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	133689775	A	C	133689775	3	2	154	1	0	0	0	0	1	0	0	0	5308	333	12	5	2530	5	EXOC4	7	133689775	Missense_Mutation	SNP	A	TCGA-B0-5095-01A-01D-1421-08	68250156	133689775	25448888	31	9393											
BMP1	649	hgsc.bcm.edu	37	8	22037969	22037969	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	22037969	G	A	22037969	4	1	154	1	0	0	0	0	0	1	0	0	1456	1212	42	2	1080	2	BMP1	8	22037969	Nonsense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08		22037969	124326053	32	9394											
ESRP1	54845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	95680227	95680227	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	95680227	G	C	95680227	3	2	154	1	0	0	0	0	1	0	0	0	5260	1377	48	4	1020	4	ESRP1	8	95680227	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	73642258	95680227	50683795	33	9395											
ASB6	140459	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	132401522	132401522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	G	132401522	A	G	132401522	3	3	154	1	0	0	0	0	1	0	0	0	1027	304	11	3	807	3	ASB6	9	132401522	Missense_Mutation	SNP	A	TCGA-B0-5095-01A-01D-1421-08		132401522	8811909	34	9396											
FRMD4A	55691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	13699459	13699459	+	Silent	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	13699459	G	A	13699459	2	1	154	1	0	0	0	0	0	0	0	1	6058	1335	47	2		2	FRMD4A	10	13699459	Silent	SNP	G	TCGA-B0-5095-01A-01D-1421-08		13699459	121835288	35	9397											
ZNF438	220929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	31134379	31134379	+	Silent	SNP	T	T	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	31134379	T	C	31134379	2	2	154	1	0	0	0	0	0	0	0	1	17922	1635	57	3		3	ZNF438	10	31134379	Silent	SNP	T	TCGA-B0-5095-01A-01D-1421-08	17434920	31134379	104400368	36	9398											
TM9SF3	56889	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	98312748	98312748	+	Silent	SNP	A	A	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	98312748	A	T	98312748	2	4	154	1	0	0	0	0	0	0	0	1	15991	10	1	5		5	TM9SF3	10	98312748	Silent	SNP	A	TCGA-B0-5095-01A-01D-1421-08	67178369	98312748	37221999	37	9399											
ZRANB1	54764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	126662867	126662867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	126662867	T	A	126662867	3	1	154	1	0	0	0	0	1	0	0	0	18234	1580	55	5	1345	5	ZRANB1	10	126662867	Missense_Mutation	SNP	T	TCGA-B0-5095-01A-01D-1421-08	28350119	126662867	8871880	38	9400											
FANCF	2188	broad.mit.edu;ucsc.edu	37	11	22646676	22646676	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	22646676	C	C	22646676	3	2	154	1	0	0	0	0	1	0	0	0	5674	1368	48	4	447	4	FANCF	11	22646676	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08		22646676	112359840	39	9401											
ROM1	6094	hgsc.bcm.edu	37	11	62381083	62381083	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	-	62381083	T	-	62381083	7	5	154	1	0	1	0	1	0	0	0	0	13534	1683	59	0	332	0	ROM1	11	62381083	Frame_Shift_Del	DEL	T	TCGA-B0-5095-01A-01D-1421-08	39734407	62381083	72625433	40	9402											
PDE2A	5138	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	72300797	72300797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	72300797	G	A	72300797	3	1	154	1	0	0	0	0	1	0	0	0	11643	1174	41	2	2038	2	PDE2A	11	72300797	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	9919714	72300797	62705719	41	9403											
GDPD5	81544	broad.mit.edu	37	11	75160647	75160647	+	Silent	SNP	C	T	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	75160647	T	T	75160647	2	4	154	1	0	0	0	0	0	0	0	1	6334	755	27	1		1	GDPD5	11	75160647	Silent	SNP	C	TCGA-B0-5095-01A-01D-1421-08	2859850	75160647	59845869	42	9404											
MLL	4297	hgsc.bcm.edu;ucsc.edu	37	11	118348895	118348896	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	118348896	-	T	118348895	7	5	154	1	0	1	1	0	0	0	0	0	9627	101	4	0	3566	0	MLL	11	118348895	Frame_Shift_Ins	INS	-	TCGA-B0-5095-01A-01D-1421-08	43188248	118348895	16657621	43	9405											
KCNA1	3736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	5021702	5021702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	5021702	G	T	5021702	3	4	154	1	0	0	0	0	1	0	0	0	8008	933	33	4	1160	4	KCNA1	12	5021702	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08		5021702	128830193	44	9406											
LST-3TM12	0	broad.mit.edu;ucsc.edu	37	12	21172281	21172281	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	21172281	C	C	21172281	3	2	154	1	0	0	0	0	1	0	0	0	9073	1493	52	3	191	3	LST-3TM12	12	21172281	Missense_Mutation	SNP	T	TCGA-B0-5095-01A-01D-1421-08	16150579	21172281	112679614	45	9407											
ITPR2	3709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	26540497	26540497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	26540497	G	T	26540497	3	4	154	1	0	0	0	0	1	0	0	0	7928	1145	40	4	390	4	ITPR2	12	26540497	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	5368216	26540497	107311398	46	9408											
KRT82	3888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52788815	52788815	+	Missense_Mutation	SNP	G	G	A	rs139996519		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	52788815	G	A	52788815	3	1	154	1	0	0	0	0	1	0	0	0	8503	1086	38	1	59	1	KRT82	12	52788815	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	26248318	52788815	81063080	47	9409											
PDE1B	5153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54962995	54962995	+	Silent	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	54962995	G	A	54962995	2	1	154	1	0	0	0	0	0	0	0	1	11641	1306	46	2		2	PDE1B	12	54962995	Silent	SNP	G	TCGA-B0-5095-01A-01D-1421-08	2174180	54962995	78888900	48	9410											
MYL6B	140465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56548877	56548877	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	56548877	G	C	56548877	3	2	154	1	0	0	0	0	1	0	0	0	10059	1174	41	4	251	4	MYL6B	12	56548877	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	1585882	56548877	77303018	49	9411											
UHRF1BP1L	23074	broad.mit.edu	37	12	100496634	100496634	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	100496634	C	C	100496634	3	2	154	1	0	0	0	0	1	0	0	0	16981	1188	41	4	4242	4	UHRF1BP1L	12	100496634	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	43947757	100496634	33355261	50	9412											
MAP1LC3B2	643246	broad.mit.edu;hgsc.bcm.edu	37	12	117013990	117013990	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	-	117013990	G	-	117013990	7	5	154	1	0	1	0	1	0	0	0	0	9239	1364	48	0	245	0	MAP1LC3B2	12	117013990	Frame_Shift_Del	DEL	G	TCGA-B0-5095-01A-01D-1421-08	16517356	117013990	16837905	51	9413											
RIN3	79890	hgsc.bcm.edu;ucsc.edu	37	14	93043822	93043824	+	Frame_Shift_Del	DEL	AGT	AGT	-	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	AGT	AGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	-	93043824	AGT	-	93043822	7	5	154	1	0	1	0	1	0	0	0	0	13386	318	11	0	377	0	RIN3	14	93043822	Frame_Shift_Del	DEL	AGT	TCGA-B0-5095-01A-01D-1421-08		93043822	14305718	52	9414											
RTL1	388015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	101351082	101351082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	101351082	T	C	101351082	3	2	154	1	0	0	0	0	1	0	0	0	13737	1464	51	3	4036	3	RTL1	14	101351082	Missense_Mutation	SNP	T	TCGA-B0-5095-01A-01D-1421-08	8307260	101351082	5998458	53	9415											
PIAS1	8554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	68434675	68434675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	68434675	G	A	68434675	3	1	154	1	0	0	0	0	1	0	0	0	11882	1014	35	2	616	2	PIAS1	15	68434675	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08		68434675	34096717	54	9416											
UACA	55075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	70960389	70960389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	G	70960389	T	G	70960389	3	3	154	1	0	0	0	0	1	0	0	0	16836	1838	64	5	1632	5	UACA	15	70960389	Missense_Mutation	SNP	T	TCGA-B0-5095-01A-01D-1421-08	2525714	70960389	31571003	55	9417											
CDH8	1006	broad.mit.edu;hgsc.bcm.edu	37	16	61851427	61851427	+	Silent	SNP	C	C	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	61851427	C	A	61851427	2	1	154	1	0	0	0	0	0	0	0	1	3118	726	26	4		4	CDH8	16	61851427	Silent	SNP	C	TCGA-B0-5095-01A-01D-1421-08		61851427	28503326	56	9418											
SCARF1	8578	broad.mit.edu	37	17	1540047	1540047	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	1540047	T	T	1540047	3	4	154	1	0	0	0	0	1	0	0	0	13896	864	30	2	911	2	SCARF1	17	1540047	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08		1540047	79655163	57	9419											
SLC47A2	146802	hgsc.bcm.edu;ucsc.edu	37	17	19606416	19606416	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	-	19606416	A	-	19606416	7	5	154	1	0	1	0	1	0	0	0	0	14661	359	13	0	641	0	SLC47A2	17	19606416	Frame_Shift_Del	DEL	A	TCGA-B0-5095-01A-01D-1421-08	18066369	19606416	61588794	58	9420											
UNC45B	146862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33501331	33501331	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	33501331	G	C	33501331	3	2	154	1	0	0	0	0	1	0	0	0	17001	1319	46	4	1957	4	UNC45B	17	33501331	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	13894915	33501331	47693879	59	9421											
PRPSAP1	5635	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74307778	74307778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	74307778	C	T	74307778	3	4	154	1	0	0	0	0	1	0	0	0	12591	507	18	2	158	2	PRPSAP1	17	74307778	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08	40806447	74307778	6887432	60	9422											
NDC80	10403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	2616501	2616501	+	Silent	SNP	C	C	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	2616501	C	T	2616501	2	4	154	1	0	0	0	0	0	0	0	1	10249	900	32	2		2	NDC80	18	2616501	Silent	SNP	C	TCGA-B0-5095-01A-01D-1421-08		2616501	75460747	61	9423											
TAF4B	6875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	23872291	23872291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	23872291	G	A	23872291	3	1	154	1	0	0	0	0	1	0	0	0	15539	1349	47	2	1702	2	TAF4B	18	23872291	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	21255790	23872291	54204957	62	9424											
MOCOS	55034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	33785102	33785102	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	33785102	T	A	33785102	3	1	154	1	0	0	0	0	1	0	0	0	9696	1667	58	5	1103	5	MOCOS	18	33785102	Missense_Mutation	SNP	T	TCGA-B0-5095-01A-01D-1421-08	9912811	33785102	44292146	63	9425											
ATP8B1	5205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	55319399	55319399	+	Silent	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	55319399	G	A	55319399	2	1	154	1	0	0	0	0	0	0	0	1	1194	958	34	2		2	ATP8B1	18	55319399	Silent	SNP	G	TCGA-B0-5095-01A-01D-1421-08	21534297	55319399	22757849	64	9426											
DUS3L	56931	broad.mit.edu	37	19	5785681	5785681	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	5785681	A	A	5785681	3	1	154	1	0	0	0	0	1	0	0	0	4809	623	22	4	280	4	DUS3L	19	5785681	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08		5785681	53343302	65	9427											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9067149	9067149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	9067149	G	A	9067149	3	1	154	1	0	0	0	0	1	0	0	0	9980	1059	37	1	23554	1	MUC16	19	9067149	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	3281468	9067149	50061834	66	9428											
DNMT1	1786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10262203	10262203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	10262203	C	T	10262203	3	4	154	1	0	0	0	0	1	0	0	0	4677	826	29	2	2834	2	DNMT1	19	10262203	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08	1195054	10262203	48866780	67	9429											
ZNF625	90589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12256409	12256409	+	Silent	SNP	C	C	T	rs188764180	by1000genomes	TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	12256409	C	T	12256409	2	4	154	1	0	0	0	0	0	0	0	1	18061	523	19	1		1	ZNF625	19	12256409	Silent	SNP	C	TCGA-B0-5095-01A-01D-1421-08	1994206	12256409	46872574	68	9430											
CCDC105	126402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15132495	15132495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	G	15132495	A	G	15132495	3	3	154	1	0	0	0	0	1	0	0	0	2742	304	11	3	1127	3	CCDC105	19	15132495	Missense_Mutation	SNP	A	TCGA-B0-5095-01A-01D-1421-08	2876086	15132495	43996488	69	9431											
C19orf47	126526	broad.mit.edu;hgsc.bcm.edu	37	19	40827909	40827909	+	Silent	SNP	G	G	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	40827909	G	T	40827909	2	4	154	1	0	0	0	0	0	0	0	1	1932	1277	45	4		4	C19orf47	19	40827909	Silent	SNP	G	TCGA-B0-5095-01A-01D-1421-08	25695414	40827909	18301074	70	9432											
PLD3	23646	hgsc.bcm.edu;ucsc.edu	37	19	40876075	40876075	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	-	40876075	G	-	40876075	7	5	154	1	0	1	0	1	0	0	0	0	12054	1020	36	0	631	0	PLD3	19	40876075	Frame_Shift_Del	DEL	G	TCGA-B0-5095-01A-01D-1421-08	48166	40876075	18252908	71	9433											
ZNF530	348327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58118103	58118103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	58118103	G	C	58118103	3	2	154	1	0	0	0	0	1	0	0	0	17983	943	33	4	1220	4	ZNF530	19	58118103	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	17242028	58118103	1010880	72	9434											
NCOA3	8202	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	46277767	46277767	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	G	46277767	C	G	46277767	3	3	154	1	0	0	0	0	1	0	0	0	10237	479	17	4	3661	4	NCOA3	20	46277767	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08		46277767	16747753	73	9435											
C20orf43	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	55049773	55049773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	55049773	C	A	55049773	3	1	154	1	0	0	0	0	1	0	0	0	2114	477	17	4	214	4	C20orf43	20	55049773	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08	8772006	55049773	7975747	74	9436											
ZGPAT	84619	broad.mit.edu;ucsc.edu	37	20	62366756	62366756	+	Missense_Mutation	SNP	G	C	C	rs17855481	bycluster;alternate_allele	TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	62366756	C	C	62366756	3	2	154	1	0	0	0	0	1	0	0	0	17686	1116	39	4	1315	4	ZGPAT	20	62366756	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	7316983	62366756	658764	75	9437											
USP25	29761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	17197352	17197352	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	G	17197352	C	G	17197352	3	3	154	1	0	0	0	0	1	0	0	0	17068	681	24	4	1322	4	USP25	21	17197352	Missense_Mutation	SNP	C	TCGA-B0-5095-01A-01D-1421-08		17197352	30932543	76	9438											
UBE2L3	7332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21968852	21968852	+	RNA	SNP	C	C	T	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	T	21968852	C	T	21968852	1	4	154	0	1	0	0	0	0	0	0	0	16875	841	29	2		2	UBE2L3	22	21968852	RNA	SNP	C	TCGA-B0-5095-01A-01D-1421-08		21968852	29335714	77	9439											
DDTL	100037417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24313566	24313566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	24313566	G	A	24313566	3	1	154	1	0	0	0	0	1	0	0	0	4342	1291	45	2	386	2	DDTL	22	24313566	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	2344714	24313566	26991000	78	9440											
PKDREJ	10343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	46655753	46655753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	A	46655753	G	A	46655753	3	1	154	1	0	0	0	0	1	0	0	0	11977	1261	44	2	3298	2	PKDREJ	22	46655753	Missense_Mutation	SNP	G	TCGA-B0-5095-01A-01D-1421-08	22342187	46655753	4648813	79	9441											
MOV10L1	54456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50555733	50555733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	50555733	A	C	50555733	3	2	154	1	0	0	0	0	1	0	0	0	9726	69	3	5	1482	5	MOV10L1	22	50555733	Missense_Mutation	SNP	A	TCGA-B0-5095-01A-01D-1421-08	3899980	50555733	748833	80	9442											
KIF4A	24137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	69622533	69622533	+	Silent	SNP	T	T	C	novel		TCGA-B0-5095-01A-01D-1421-08	TCGA-B0-5095-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93c714f8-acea-4550-92fe-aad4aad65ac9	fe1f491c-9dd3-4d5b-9c51-3e3554674e99	C	69622533	T	C	69622533	2	2	154	1	0	0	0	0	0	0	0	1	8310	1500	52	3		3	KIF4A	23	69622533	Silent	SNP	T	TCGA-B0-5095-01A-01D-1421-08		69622533	85648027	81	9443											
VPS13D	55187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12423192	12423192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	12423192	C	G	12423192	3	3	155	1	0	0	0	0	1	0	0	0	17204	681	24	4	10539	4	VPS13D	1	12423192	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08		12423192	236827429	1	9444											
NFYC	4802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	41218906	41218906	+	Silent	SNP	T	T	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	41218906	T	G	41218906	2	3	155	1	0	0	0	0	0	0	0	1	10398	1538	54	5		5	NFYC	1	41218906	Silent	SNP	T	TCGA-B0-5096-01A-01D-1421-08	28795714	41218906	208031715	2	9445											
FNBP1L	54874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	93987691	93987691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	93987691	C	T	93987691	3	4	155	1	0	0	0	0	1	0	0	0	5973	550	19	1	203	1	FNBP1L	1	93987691	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	52768785	93987691	155262930	3	9446											
GNAI3	2773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110129422	110129422	+	Silent	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	110129422	C	T	110129422	2	4	155	1	0	0	0	0	0	0	0	1	6513	816	29	2		2	GNAI3	1	110129422	Silent	SNP	C	TCGA-B0-5096-01A-01D-1421-08	16141731	110129422	139121199	4	9447											
RBM15	64783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110883213	110883213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	110883213	C	T	110883213	3	4	155	1	0	0	0	0	1	0	0	0	13129	884	31	1	1188	1	RBM15	1	110883213	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	753791	110883213	138367408	5	9448											
DUSP27	92235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	167095901	167095901	+	Silent	SNP	A	A	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	167095901	A	C	167095901	2	2	155	1	0	0	0	0	0	0	0	1	4826	175	7	5		5	DUSP27	1	167095901	Silent	SNP	A	TCGA-B0-5096-01A-01D-1421-08	56212688	167095901	82154720	6	9449											
CACNA1E	777	hgsc.bcm.edu	37	1	181706671	181706672	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	181706672	-	C	181706671	7	5	155	1	0	1	1	0	0	0	0	0	2544	1203	42	0	3523	0	CACNA1E	1	181706671	Frame_Shift_Ins	INS	-	TCGA-B0-5096-01A-01D-1421-08	14610770	181706671	67543950	7	9450											
LAMB3	3914	hgsc.bcm.edu	37	1	209799286	209799286	+	Silent	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	209799286	C	T	209799286	2	4	155	1	0	0	0	0	0	0	0	1	8619	726	26	2		2	LAMB3	1	209799286	Silent	SNP	C	TCGA-B0-5096-01A-01D-1421-08	28092615	209799286	39451335	8	9451											
ZNF124	7678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247322364	247322364	+	Silent	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	247322364	G	A	247322364	2	1	155	1	0	0	0	0	0	0	0	1	17732	1368	48	2		2	ZNF124	1	247322364	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08	37523078	247322364	1928257	9	9452											
OTX1	5013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	63282664	63282664	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	63282664	G	C	63282664	3	2	155	1	0	0	0	0	1	0	0	0	11327	1319	46	4	288	4	OTX1	2	63282664	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08		63282664	179916709	10	9453											
C2orf89	0	broad.mit.edu;ucsc.edu	37	2	85097390	85097390	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	85097390	T	T	85097390	3	4	155	1	0	0	0	0	1	0	0	0	2205	864	30	2	762	2	C2orf89	2	85097390	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	21814726	85097390	158101983	11	9454											
GCC2	9648	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	109100728	109100728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	109100728	A	G	109100728	3	3	155	1	0	0	0	0	1	0	0	0	6293	101	4	3	3624	3	GCC2	2	109100728	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08	24003338	109100728	134098645	12	9455											
SLC35F5	80255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	114512805	114512805	+	Silent	SNP	A	A	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	114512805	A	C	114512805	2	2	155	1	0	0	0	0	0	0	0	1	14605	291	11	5		5	SLC35F5	2	114512805	Silent	SNP	A	TCGA-B0-5096-01A-01D-1421-08	5412077	114512805	128686568	13	9456											
PROC	5624	broad.mit.edu;hgsc.bcm.edu	37	2	128186505	128186505	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	128186505	A	C	128186505	3	2	155	1	0	0	0	0	1	0	0	0	12555	247	9	5	1399	5	PROC	2	128186505	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08	13673700	128186505	115012868	14	9457											
KCNH7	90134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	163241431	163241431	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	163241431	G	C	163241431	3	2	155	1	0	0	0	0	1	0	0	0	8044	1000	35	4	877	4	KCNH7	2	163241431	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	35054926	163241431	79957942	15	9458											
CYBRD1	79901	broad.mit.edu;hgsc.bcm.edu	37	2	172411334	172411334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	172411334	G	A	172411334	3	1	155	1	0	0	0	0	1	0	0	0	4136	1377	48	2	872	2	CYBRD1	2	172411334	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	9169903	172411334	70788039	16	9459											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179417031	179417031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	179417031	C	T	179417031	3	4	155	1	0	0	0	0	1	0	0	0	16747	855	30	2	17495	2	TTN	2	179417031	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	7005697	179417031	63782342	17	9460											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179587903	179587903	+	Silent	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	179587903	G	A	179587903	2	1	155	1	0	0	0	0	0	0	0	1	16747	1368	48	2		2	TTN	2	179587903	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08	170872	179587903	63611470	18	9461											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179665198	179665198	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	179665198	C	G	179665198	3	3	155	1	0	0	0	0	1	0	0	0	16747	680	24	4	110917	4	TTN	2	179665198	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	77295	179665198	63534175	19	9462											
SLC39A10	57181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	196545178	196545178	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	196545178	G	T	196545178	4	4	155	1	0	0	0	0	0	1	0	0	14626	943	33	4	414	4	SLC39A10	2	196545178	Nonsense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	16879980	196545178	46654195	20	9463											
USP40	55230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234431845	234431845	+	Silent	SNP	A	A	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	234431845	A	G	234431845	2	3	155	1	0	0	0	0	0	0	0	1	17084	10	1	3		3	USP40	2	234431845	Silent	SNP	A	TCGA-B0-5096-01A-01D-1421-08	37886667	234431845	8767528	21	9464											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188197	10188197	+	Splice_Site	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	10188197	G	T	10188197	5	4	155	1	0	0	0	0	0	0	1	0	17174	1014	35	4	346	4	VHL	3	10188197	Splice_Site	SNP	G	TCGA-B0-5096-01A-01D-1421-08		10188197	187834233	22	9465											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52443894	52443894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	52443894	T	C	52443894	3	2	155	1	0	0	0	0	1	0	0	0	1311	1435	50	3	2256	3	BAP1	3	52443894	Missense_Mutation	SNP	T	TCGA-B0-5096-01A-01D-1421-08	42255697	52443894	145578536	23	9466											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52651339	52651339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	52651339	A	T	52651339	3	4	155	1	0	0	0	0	1	0	0	0	11498	217	8	5	3211	5	PBRM1	3	52651339	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08	207445	52651339	145371091	24	9467											
MORC1	27136	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	108788593	108788593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	108788593	C	T	108788593	3	4	155	1	0	0	0	0	1	0	0	0	9708	681	24	2	2333	2	MORC1	3	108788593	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	56137254	108788593	89233837	25	9468											
DNAJC13	23317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	132245126	132245126	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	132245126	G	A	132245126	5	1	155	1	0	0	0	0	0	0	1	0	4634	1043	36	2	6588	2	DNAJC13	3	132245126	Splice_Site	SNP	G	TCGA-B0-5096-01A-01D-1421-08	23456533	132245126	65777304	26	9469											
A4GNT	51146	broad.mit.edu;ucsc.edu	37	3	137843327	137843327	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	137843327	C	C	137843327	3	2	155	1	0	0	0	0	1	0	0	0	7	159	6	5	224	5	A4GNT	3	137843327	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08	5598201	137843327	60179103	27	9470											
SLC9A9	285195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	142987800	142987800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	142987800	G	T	142987800	3	4	155	1	0	0	0	0	1	0	0	0	14734	1348	47	4	318	4	SLC9A9	3	142987800	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	5144473	142987800	55034630	28	9471											
OPA1	4976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	193355797	193355797	+	Silent	SNP	C	C	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	193355797	C	G	193355797	2	3	155	1	0	0	0	0	0	0	0	1	10878	610	22	4		4	OPA1	3	193355797	Silent	SNP	C	TCGA-B0-5096-01A-01D-1421-08	50367997	193355797	4666633	29	9472											
WHSC1	7468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	1920240	1920240	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	1920240	G	C	1920240	3	2	155	1	0	0	0	0	1	0	0	0	17374	1001	35	4	1314	4	WHSC1	4	1920240	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08		1920240	189234036	30	9473											
ALB	213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	74283985	74283985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	74283985	A	G	74283985	3	3	155	1	0	0	0	0	1	0	0	0	486	449	16	3	1655	3	ALB	4	74283985	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08	72363745	74283985	116870291	31	9474											
CCNI	10983	broad.mit.edu;ucsc.edu	37	4	77969663	77969663	+	Silent	SNP	G	T	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	77969663	T	T	77969663	2	4	155	1	0	0	0	0	0	0	0	1	2928	987	35	4		4	CCNI	4	77969663	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08	3685678	77969663	113184613	32	9475											
ABCG2	9429	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	89016750	89016750	+	Silent	SNP	A	A	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	89016750	A	G	89016750	2	3	155	1	0	0	0	0	0	0	0	1	69	262	10	3		3	ABCG2	4	89016750	Silent	SNP	A	TCGA-B0-5096-01A-01D-1421-08	11047087	89016750	102137526	33	9476											
GPX8	493869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	54459987	54459987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	54459987	A	G	54459987	3	3	155	1	0	0	0	0	1	0	0	0	6753	179	7	3	581	3	GPX8	5	54459987	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08		54459987	126455273	34	9477											
LARS	51520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	145557190	145557190	+	Silent	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	145557190	C	T	145557190	2	4	155	1	0	0	0	0	0	0	0	1	8641	912	32	2		2	LARS	5	145557190	Silent	SNP	C	TCGA-B0-5096-01A-01D-1421-08	91097203	145557190	35358070	35	9478											
THOC3	84321	broad.mit.edu	37	5	175387036	175387036	+	Missense_Mutation	SNP	C	T	T	rs139761351	alternate_allele	TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	175387036	T	T	175387036	3	4	155	1	0	0	0	0	1	0	0	0	15878	739	26	2	67	2	THOC3	5	175387036	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	29829846	175387036	5528224	36	9479											
SNRNP48	154007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7605680	7605680	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	7605680	G	A	7605680	4	1	155	1	0	0	0	0	0	1	0	0	14870	1357	47	2	793	2	SNRNP48	6	7605680	Nonsense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08		7605680	163509387	37	9480											
OR12D3	81797	broad.mit.edu;hgsc.bcm.edu	37	6	29342284	29342284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	29342284	G	A	29342284	3	1	155	1	0	0	0	0	1	0	0	0	10939	1174	41	2	173	2	OR12D3	6	29342284	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	21736604	29342284	141772783	38	9481											
VARS2	57176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	30884693	30884693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	30884693	G	A	30884693	3	1	155	1	0	0	0	0	1	0	0	0	17136	1261	44	2	830	2	VARS2	6	30884693	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	1542409	30884693	140230374	39	9482	104	2									
VARS2	57176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	30884694	30884694	+	Silent	SNP	T	T	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	30884694	T	C	30884694	2	2	155	1	0	0	0	0	0	0	0	1	17136	1683	59	3		3	VARS2	6	30884694	Silent	SNP	T	TCGA-B0-5096-01A-01D-1421-08	1	30884694	140230373	40	9483	104	2									
EHMT2	10919	broad.mit.edu;hgsc.bcm.edu	37	6	31855386	31855386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	31855386	T	C	31855386	3	2	155	1	0	0	0	0	1	0	0	0	4986	1580	55	3	1709	3	EHMT2	6	31855386	Missense_Mutation	SNP	T	TCGA-B0-5096-01A-01D-1421-08	970692	31855386	139259681	41	9484											
PBX2	5089	hgsc.bcm.edu	37	6	32155054	32155054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	32155054	C	T	32155054	3	4	155	1	0	0	0	0	1	0	0	0	11500	797	28	2	319	2	PBX2	6	32155054	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	299668	32155054	138960013	42	9485											
NOTCH4	4855	broad.mit.edu;hgsc.bcm.edu	37	6	32170158	32170158	+	Silent	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	32170158	C	T	32170158	2	4	155	1	0	0	0	0	0	0	0	1	10558	639	23	1		1	NOTCH4	6	32170158	Silent	SNP	C	TCGA-B0-5096-01A-01D-1421-08	15104	32170158	138944909	43	9486											
FOXP4	116113	broad.mit.edu;hgsc.bcm.edu	37	6	41554889	41554889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	41554889	C	T	41554889	3	4	155	1	0	0	0	0	1	0	0	0	6036	652	23	1	671	1	FOXP4	6	41554889	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	9384731	41554889	129560178	44	9487											
COBL	23242	hgsc.bcm.edu	37	7	51096357	51096358	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	51096358	-	T	51096357	7	5	155	1	0	1	1	0	0	0	0	0	3655	796	28	0	1365	0	COBL	7	51096357	Frame_Shift_Ins	INS	-	TCGA-B0-5096-01A-01D-1421-08		51096357	108042306	45	9488											
MLXIPL	51085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	73011232	73011232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	73011232	A	G	73011232	3	3	155	1	0	0	0	0	1	0	0	0	9644	72	3	3	956	3	MLXIPL	7	73011232	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08	21914875	73011232	86127431	46	9489											
LAMB1	3912	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107596066	107596066	+	Silent	SNP	A	A	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	107596066	A	G	107596066	2	3	155	1	0	0	0	0	0	0	0	1	8617	175	7	3		3	LAMB1	7	107596066	Silent	SNP	A	TCGA-B0-5096-01A-01D-1421-08	34584834	107596066	51542597	47	9490											
LAMB4	22798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107720165	107720165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	107720165	G	A	107720165	3	1	155	1	0	0	0	0	1	0	0	0	8620	1232	43	2	3597	2	LAMB4	7	107720165	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	124099	107720165	51418498	48	9491											
CAPZA2	830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	116533094	116533094	+	Silent	SNP	A	A	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	116533094	A	T	116533094	2	4	155	1	0	0	0	0	0	0	0	1	2643	175	7	5		5	CAPZA2	7	116533094	Silent	SNP	A	TCGA-B0-5096-01A-01D-1421-08	8812929	116533094	42605569	49	9492											
ZC3HC1	51530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129666109	129666109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	129666109	T	A	129666109	3	1	155	1	0	0	0	0	1	0	0	0	17589	1783	62	5	863	5	ZC3HC1	7	129666109	Missense_Mutation	SNP	T	TCGA-B0-5096-01A-01D-1421-08	13133015	129666109	29472554	50	9493	105	2									
ZC3HC1	51530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129666110	129666110	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	129666110	C	A	129666110	4	1	155	1	0	0	0	0	0	1	0	0	17589	835	29	4	864	4	ZC3HC1	7	129666110	Nonsense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	1	129666110	29472553	51	9494	105	2									
ERICH1	157697	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	623372	623372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	623372	T	A	623372	3	1	155	1	0	0	0	0	1	0	0	0	5232	1551	54	5	363	5	ERICH1	8	623372	Missense_Mutation	SNP	T	TCGA-B0-5096-01A-01D-1421-08		623372	145740650	52	9495											
LZTS1	11178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	20107281	20107281	+	Silent	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	20107281	C	T	20107281	2	4	155	1	0	0	0	0	0	0	0	1	9145	581	21	2		2	LZTS1	8	20107281	Silent	SNP	C	TCGA-B0-5096-01A-01D-1421-08	19483909	20107281	126256741	53	9496											
CDCA2	157313	broad.mit.edu;hgsc.bcm.edu	37	8	25364407	25364407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	25364407	G	T	25364407	3	4	155	1	0	0	0	0	1	0	0	0	3088	1261	44	4	2279	4	CDCA2	8	25364407	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	5257126	25364407	120999615	54	9497											
ASH2L	9070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	37967896	37967896	+	Splice_Site	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	37967896	G	T	37967896	5	4	155	1	0	0	0	0	0	0	1	0	1042	956	33	4	415	4	ASH2L	8	37967896	Splice_Site	SNP	G	TCGA-B0-5096-01A-01D-1421-08	12603489	37967896	108396126	55	9498											
ADAM32	203102	hgsc.bcm.edu;ucsc.edu	37	8	39103665	39103666	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	39103666	-	A	39103665	7	5	155	1	0	1	1	0	0	0	0	0	249	479	17	0	1948	0	ADAM32	8	39103665	Frame_Shift_Ins	INS	-	TCGA-B0-5096-01A-01D-1421-08	1135769	39103665	107260357	56	9499											
ZFHX4	79776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	77768068	77768068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	77768068	C	T	77768068	3	4	155	1	0	0	0	0	1	0	0	0	17647	536	19	1	8945	1	ZFHX4	8	77768068	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	38664403	77768068	68595954	57	9500											
ZHX2	22882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	123963970	123963970	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	123963970	C	G	123963970	3	3	155	1	0	0	0	0	1	0	0	0	17688	565	20	4	222	4	ZHX2	8	123963970	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	46195902	123963970	22400052	58	9501											
TAF3	83860	broad.mit.edu	37	10	8051125	8051125	+	Silent	SNP	G	T	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	8051125	T	T	8051125	2	4	155	1	0	0	0	0	0	0	0	1	15537	1074	38	4		4	TAF3	10	8051125	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08		8051125	127483622	59	9502											
MUC6	4588	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1016334	1016334	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	1016334	G	C	1016334	3	2	155	1	0	0	0	0	1	0	0	0	9987	1059	37	4	864	4	MUC6	11	1016334	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08		1016334	133990182	60	9503											
MPPED2	744	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	30557623	30557623	+	Silent	SNP	A	A	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	30557623	A	T	30557623	2	4	155	1	0	0	0	0	0	0	0	1	9749	59	3	5		5	MPPED2	11	30557623	Silent	SNP	A	TCGA-B0-5096-01A-01D-1421-08	29541289	30557623	104448893	61	9504											
CCDC86	79080	hgsc.bcm.edu	37	11	60610042	60610043	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	60610043	-	C	60610042	7	5	155	1	0	1	1	0	0	0	0	0	2863	1203	42	0	447	0	CCDC86	11	60610042	Frame_Shift_Ins	INS	-	TCGA-B0-5096-01A-01D-1421-08	30052419	60610042	74396474	62	9505											
CPSF7	79869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61188976	61188976	+	Silent	SNP	A	A	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	61188976	A	C	61188976	2	2	155	1	0	0	0	0	0	0	0	1	3832	291	11	5		5	CPSF7	11	61188976	Silent	SNP	A	TCGA-B0-5096-01A-01D-1421-08	578934	61188976	73817540	63	9506											
NAALAD2	10003	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	89907078	89907078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	89907078	G	T	89907078	3	4	155	1	0	0	0	0	1	0	0	0	10135	1310	46	4	1551	4	NAALAD2	11	89907078	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	28718102	89907078	45099438	64	9507											
OSBPL8	114882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	76786494	76786494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	76786494	A	G	76786494	3	3	155	1	0	0	0	0	1	0	0	0	11290	217	8	3	1933	3	OSBPL8	12	76786494	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08		76786494	57065401	65	9508											
CEP290	80184	hgsc.bcm.edu;ucsc.edu	37	12	88482866	88482866	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	-	88482866	T	-	88482866	7	5	155	1	0	1	0	1	0	0	0	0	3255	1490	52	0	3563	0	CEP290	12	88482866	Frame_Shift_Del	DEL	T	TCGA-B0-5096-01A-01D-1421-08	11696372	88482866	45369029	66	9509											
BDKRB1	623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	96730316	96730316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	96730316	C	G	96730316	3	3	155	1	0	0	0	0	1	0	0	0	1392	506	18	4	299	4	BDKRB1	14	96730316	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08		96730316	10619224	67	9510											
ARHGAP11B	89839	broad.mit.edu;hgsc.bcm.edu	37	15	30919056	30919056	+	Silent	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	30919056	G	T	30919056	2	4	155	1	0	0	0	0	0	0	0	1	864	1364	48	4		4	ARHGAP11B	15	30919056	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08		30919056	71612336	68	9511											
PLA2G4D	283748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42363506	42363506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	42363506	G	A	42363506	3	1	155	1	0	0	0	0	1	0	0	0	12011	1232	43	2	781	2	PLA2G4D	15	42363506	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	11444450	42363506	60167886	69	9512											
TP53BP1	7158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43748161	43748161	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	43748161	G	C	43748161	4	2	155	1	0	0	0	0	0	1	0	0	16395	1294	45	4	3356	4	TP53BP1	15	43748161	Nonsense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	1384655	43748161	58783231	70	9513											
TCF12	6938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	57565320	57565320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	57565320	G	A	57565320	3	1	155	1	0	0	0	0	1	0	0	0	15699	1087	38	1	1981	1	TCF12	15	57565320	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	13817159	57565320	44966072	71	9514											
CGNL1	84952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	57836715	57836715	+	Nonsense_Mutation	SNP	C	C	G	rs137878510	by1000genomes;alternate_allele	TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	57836715	C	G	57836715	4	3	155	1	0	0	0	0	0	1	0	0	3306	489	17	4	3478	4	CGNL1	15	57836715	Nonsense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	271395	57836715	44694677	72	9515											
HERC1	8925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63970224	63970224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	63970224	C	A	63970224	3	1	155	1	0	0	0	0	1	0	0	0	7064	681	24	4	7863	4	HERC1	15	63970224	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	6133509	63970224	38561168	73	9516											
HN1L	90861	broad.mit.edu;hgsc.bcm.edu	37	16	1748907	1748907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	1748907	G	A	1748907	3	1	155	1	0	0	0	0	1	0	0	0	7257	1058	37	1	499	1	HN1L	16	1748907	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08		1748907	88605846	74	9517											
CCNF	899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2506613	2506613	+	Silent	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	2506613	G	A	2506613	2	1	155	1	0	0	0	0	0	0	0	1	2924	991	35	2		2	CCNF	16	2506613	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08	757706	2506613	87848140	75	9518											
NLRC3	197358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3614126	3614126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	3614126	G	A	3614126	3	1	155	1	0	0	0	0	1	0	0	0	10475	1319	46	2	2450	2	NLRC3	16	3614126	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	1107513	3614126	86740627	76	9519	106	2									
NLRC3	197358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3614127	3614127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	3614127	C	T	3614127	3	4	155	1	0	0	0	0	1	0	0	0	10475	710	25	2	2451	2	NLRC3	16	3614127	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	1	3614127	86740626	77	9520	106	2									
BBS2	583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	56535341	56535341	+	Silent	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	56535341	G	A	56535341	2	1	155	1	0	0	0	0	0	0	0	1	1338	1161	41	2		2	BBS2	16	56535341	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08	52921214	56535341	33819412	78	9521											
GOT2	2806	broad.mit.edu;hgsc.bcm.edu	37	16	58757714	58757714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	58757714	T	C	58757714	3	2	155	1	0	0	0	0	1	0	0	0	6588	1493	52	3	1146	3	GOT2	16	58757714	Missense_Mutation	SNP	T	TCGA-B0-5096-01A-01D-1421-08	2222373	58757714	31597039	79	9522											
CDC27	996	broad.mit.edu;hgsc.bcm.edu	37	17	45219300	45219300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	45219300	A	T	45219300	3	4	155	1	0	0	0	0	1	0	0	0	3068	330	12	5	1036	5	CDC27	17	45219300	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08		45219300	35975910	80	9523											
DLX4	1748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48050513	48050513	+	Silent	SNP	G	G	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	48050513	G	C	48050513	2	2	155	1	0	0	0	0	0	0	0	1	4575	1045	37	4		4	DLX4	17	48050513	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08	2831213	48050513	33144697	81	9524											
FN3K	64122	hgsc.bcm.edu;ucsc.edu	37	17	80706807	80706808	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	80706808	-	G	80706807	7	5	155	1	0	1	1	0	0	0	0	0	5970	72	3	0	563	0	FN3K	17	80706807	Frame_Shift_Ins	INS	-	TCGA-B0-5096-01A-01D-1421-08	32656294	80706807	488403	82	9525											
CELF4	56853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	34855139	34855139	+	Silent	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	34855139	G	A	34855139	2	1	155	1	0	0	0	0	0	0	0	1	3220	1049	37	1		1	CELF4	18	34855139	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08		34855139	43222109	83	9526											
CCBE1	147372	hgsc.bcm.edu;ucsc.edu	37	18	57147435	57147435	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	-	57147435	C	-	57147435	7	5	155	1	0	1	0	1	0	0	0	0	2733	855	30	0	1008	0	CCBE1	18	57147435	Frame_Shift_Del	DEL	C	TCGA-B0-5096-01A-01D-1421-08	22292296	57147435	20929813	84	9527											
GAMT	2593	broad.mit.edu;hgsc.bcm.edu	37	19	1398924	1398924	+	Silent	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	1398924	G	A	1398924	2	1	155	1	0	0	0	0	0	0	0	1	6238	1280	45	2		2	GAMT	19	1398924	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08		1398924	57730059	85	9528											
EMR1	2015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6896425	6896425	+	Silent	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	6896425	C	T	6896425	2	4	155	1	0	0	0	0	0	0	0	1	5106	477	17	2		2	EMR1	19	6896425	Silent	SNP	C	TCGA-B0-5096-01A-01D-1421-08	5497501	6896425	52232558	86	9529											
SIGLEC8	27181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51961243	51961243	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	51961243	C	G	51961243	3	3	155	1	0	0	0	0	1	0	0	0	14327	856	30	4	1128	4	SIGLEC8	19	51961243	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08	45064818	51961243	7167740	87	9530											
PEG3	5178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57327461	57327461	+	Silent	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	57327461	G	T	57327461	2	4	155	1	0	0	0	0	0	0	0	1	11727	987	35	4		4	PEG3	19	57327461	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08	5366218	57327461	1801522	88	9531											
PDYN	5173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	1961113	1961113	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	1961113	A	T	1961113	4	4	155	1	0	0	0	0	0	1	0	0	11706	224	8	5	147	5	PDYN	20	1961113	Nonsense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08		1961113	61064407	89	9532											
GSS	2937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33529582	33529582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	33529582	G	T	33529582	3	4	155	1	0	0	0	0	1	0	0	0	6836	942	33	4	914	4	GSS	20	33529582	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	31568469	33529582	29495938	90	9533											
SLC37A1	54020	hgsc.bcm.edu	37	21	43962544	43962545	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	G	43962545	-	G	43962544	7	5	155	1	0	1	1	0	0	0	0	0	14610	1580	55	0	539	0	SLC37A1	21	43962544	Frame_Shift_Ins	INS	-	TCGA-B0-5096-01A-01D-1421-08		43962544	4167351	91	9534											
PKNOX1	5316	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	44448816	44448816	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	44448816	A	T	44448816	3	4	155	1	0	0	0	0	1	0	0	0	11989	217	8	5	965	5	PKNOX1	21	44448816	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08	486272	44448816	3681079	92	9535											
TXNRD2	10587	broad.mit.edu;hgsc.bcm.edu	37	22	19883099	19883099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	19883099	C	T	19883099	3	4	155	1	0	0	0	0	1	0	0	0	16820	478	17	2	822	2	TXNRD2	22	19883099	Missense_Mutation	SNP	C	TCGA-B0-5096-01A-01D-1421-08		19883099	31421467	93	9536											
CBX6	23466	hgsc.bcm.edu	37	22	39262466	39262466	+	Silent	SNP	C	C	T	rs114863931	byfrequency;by1000genomes;alternate_allele	TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	39262466	C	T	39262466	2	4	155	1	0	0	0	0	0	0	0	1	2724	755	27	1		1	CBX6	22	39262466	Silent	SNP	C	TCGA-B0-5096-01A-01D-1421-08	19379367	39262466	12042100	94	9537											
PNPLA4	8228	broad.mit.edu;hgsc.bcm.edu	37	X	7889834	7889834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	7889834	G	T	7889834	3	4	155	1	0	0	0	0	1	0	0	0	12174	1020	36	4	446	4	PNPLA4	23	7889834	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08		7889834	147380726	95	9538											
FAM9A	171482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	8764374	8764374	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	8764374	A	T	8764374	3	4	155	1	0	0	0	0	1	0	0	0	5666	446	16	5	591	5	FAM9A	23	8764374	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08	874540	8764374	146506186	96	9539											
COL4A6	1288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107431170	107431170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	A	107431170	G	A	107431170	3	1	155	1	0	0	0	0	1	0	0	0	3697	1057	37	1	3493	1	COL4A6	23	107431170	Missense_Mutation	SNP	G	TCGA-B0-5096-01A-01D-1421-08	98666796	107431170	47839390	97	9540											
COL4A5	1287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107935977	107935977	+	Splice_Site	SNP	G	G	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	107935977	G	T	107935977	5	4	155	1	0	0	0	0	0	0	1	0	3696	1014	35	4	4711	4	COL4A5	23	107935977	Splice_Site	SNP	G	TCGA-B0-5096-01A-01D-1421-08	504807	107935977	47334583	98	9541											
ATP1B4	23439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	119509282	119509282	+	Silent	SNP	C	C	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	119509282	C	T	119509282	2	4	155	1	0	0	0	0	0	0	0	1	1135	576	20	2		2	ATP1B4	23	119509282	Silent	SNP	C	TCGA-B0-5096-01A-01D-1421-08	11573305	119509282	35761278	99	9542											
CT47B1	643311	broad.mit.edu	37	X	120009345	120009345	+	Silent	SNP	G	T	T	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	T	120009345	T	T	120009345	2	4	155	1	0	0	0	0	0	0	0	1	3991	1190	42	4		4	CT47B1	23	120009345	Silent	SNP	G	TCGA-B0-5096-01A-01D-1421-08	500063	120009345	35261215	100	9543											
MTMR1	8776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	149900042	149900042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5096-01A-01D-1421-08	TCGA-B0-5096-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	261de0a2-6006-4b3b-aac0-37d9b33840aa	4f944901-bdba-4e42-8dcd-bba2dae62b7b	C	149900042	A	C	149900042	3	2	155	1	0	0	0	0	1	0	0	0	9945	333	12	5	848	5	MTMR1	23	149900042	Missense_Mutation	SNP	A	TCGA-B0-5096-01A-01D-1421-08	29890697	149900042	5370518	101	9544											
SPSB1	80176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	9415972	9415972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	9415972	G	A	9415972	3	1	156	1	0	0	0	0	1	0	0	0	15124	1000	35	2	24	2	SPSB1	1	9415972	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08		9415972	239834649	1	9545											
GCLM	2730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94370100	94370100	+	Silent	SNP	T	T	C	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	C	94370100	T	C	94370100	2	2	156	1	0	0	0	0	0	0	0	1	6303	1838	64	3		3	GCLM	1	94370100	Silent	SNP	T	TCGA-B0-5097-01A-01D-1421-08	84954128	94370100	154880521	2	9546											
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu	37	1	144865887	144865887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	C	144865887	G	C	144865887	3	2	156	1	0	0	0	0	1	0	0	0	11650	1000	35	4	1387	4	PDE4DIP	1	144865887	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	50495787	144865887	104384734	3	9547											
MAEL	84944	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	166962002	166962002	+	Silent	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	166962002	C	T	166962002	2	4	156	1	0	0	0	0	0	0	0	1	9161	842	30	2		2	MAEL	1	166962002	Silent	SNP	C	TCGA-B0-5097-01A-01D-1421-08	22096115	166962002	82288619	4	9548											
TOR3A	64222	broad.mit.edu;hgsc.bcm.edu	37	1	179057211	179057211	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	G	179057211	T	G	179057211	3	3	156	1	0	0	0	0	1	0	0	0	16388	1609	56	5	819	5	TOR3A	1	179057211	Missense_Mutation	SNP	T	TCGA-B0-5097-01A-01D-1421-08	12095209	179057211	70193410	5	9549											
WDR64	128025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	241875161	241875161	+	Silent	SNP	G	G	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	241875161	G	A	241875161	2	1	156	1	0	0	0	0	0	0	0	1	17327	991	35	2		2	WDR64	1	241875161	Silent	SNP	G	TCGA-B0-5097-01A-01D-1421-08	62817950	241875161	7375460	6	9550											
ALMS1	7840	broad.mit.edu;hgsc.bcm.edu	37	2	73677725	73677725	+	Silent	SNP	T	T	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	73677725	T	A	73677725	2	1	156	1	0	0	0	0	0	0	0	1	535	1538	54	5		5	ALMS1	2	73677725	Silent	SNP	T	TCGA-B0-5097-01A-01D-1421-08		73677725	169521648	7	9551											
ASTL	431705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	96789864	96789864	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	96789864	C	A	96789864	4	1	156	1	0	0	0	0	0	1	0	0	1063	864	30	4	277	4	ASTL	2	96789864	Nonsense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	23112139	96789864	146409509	8	9552											
NFE2L2	4780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	178098803	178098803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	178098803	C	T	178098803	3	4	156	1	0	0	0	0	1	0	0	0	10375	507	18	2	1591	2	NFE2L2	2	178098803	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	81308939	178098803	65100570	9	9553											
NAB1	4664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	191550288	191550288	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	C	191550288	G	C	191550288	3	2	156	1	0	0	0	0	1	0	0	0	10138	1368	48	4	1200	4	NAB1	2	191550288	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	13451485	191550288	51649085	10	9554											
DNAH7	56171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	196642652	196642652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	196642652	C	T	196642652	3	4	156	1	0	0	0	0	1	0	0	0	4608	565	20	2	1166	2	DNAH7	2	196642652	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	5092364	196642652	46556721	11	9555											
DOCK10	55619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	225729384	225729384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	C	225729384	A	C	225729384	3	2	156	1	0	0	0	0	1	0	0	0	4687	11	1	5	5248	5	DOCK10	2	225729384	Missense_Mutation	SNP	A	TCGA-B0-5097-01A-01D-1421-08	29086732	225729384	17469989	12	9556											
VHL	7428	broad.mit.edu	37	3	10183752	10183752	+	Missense_Mutation	SNP	T	A	A	rs5030803	alternate_allele	TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	10183752	A	A	10183752	3	1	156	1	0	0	0	0	1	0	0	0	17174	1667	58	5	223	5	VHL	3	10183752	Missense_Mutation	SNP	T	TCGA-B0-5097-01A-01D-1421-08		10183752	187838678	13	9557	107	2									
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183753	10183753	+	Silent	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	10183753	C	T	10183753	2	4	156	1	0	0	0	0	0	0	0	1	17174	813	29	2		2	VHL	3	10183753	Silent	SNP	C	TCGA-B0-5097-01A-01D-1421-08	1	10183753	187838677	14	9558	107	2									
FBLN2	2199	broad.mit.edu;ucsc.edu	37	3	13670697	13670697	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	13670697	T	T	13670697	3	4	156	1	0	0	0	0	1	0	0	0	5706	1319	46	4	1483	4	FBLN2	3	13670697	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	3486944	13670697	184351733	15	9559											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52441262	52441262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	C	52441262	A	C	52441262	3	2	156	1	0	0	0	0	1	0	0	0	1311	72	3	5	1725	5	BAP1	3	52441262	Missense_Mutation	SNP	A	TCGA-B0-5097-01A-01D-1421-08	38770565	52441262	145581168	16	9560											
EPHA3	2042	hgsc.bcm.edu;ucsc.edu	37	3	89468448	89468448	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	-	89468448	A	-	89468448	7	5	156	1	0	1	0	1	0	0	0	0	5170	246	9	0	2050	0	EPHA3	3	89468448	Frame_Shift_Del	DEL	A	TCGA-B0-5097-01A-01D-1421-08	37027186	89468448	108553982	17	9561											
POLR2H	5437	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184082991	184082991	+	Silent	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	184082991	C	T	184082991	2	4	156	1	0	0	0	0	0	0	0	1	12228	506	18	2		2	POLR2H	3	184082991	Silent	SNP	C	TCGA-B0-5097-01A-01D-1421-08	94614543	184082991	13939439	18	9562											
PIGG	54872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	515604	515604	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	515604	T	A	515604	3	1	156	1	0	0	0	0	1	0	0	0	11895	1722	60	5	1518	5	PIGG	4	515604	Missense_Mutation	SNP	T	TCGA-B0-5097-01A-01D-1421-08		515604	190638672	19	9563											
DCAF4L1	285429	broad.mit.edu;ucsc.edu	37	4	41983927	41983927	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	C	41983927	C	C	41983927	3	2	156	1	0	0	0	0	1	0	0	0	4273	159	6	5	120	5	DCAF4L1	4	41983927	Missense_Mutation	SNP	A	TCGA-B0-5097-01A-01D-1421-08	41468323	41983927	149170349	20	9564											
CLOCK	9575	broad.mit.edu;ucsc.edu	37	4	56314944	56314944	+	Splice_Site	SNP	A	G	G	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	G	56314944	G	G	56314944	5	3	156	1	0	0	0	0	0	0	1	0	3551	405	14	3	1023	3	CLOCK	4	56314944	Splice_Site	SNP	A	TCGA-B0-5097-01A-01D-1421-08	14331017	56314944	134839332	21	9565	108	2									
CLOCK	9575	broad.mit.edu;ucsc.edu	37	4	56314945	56314945	+	Splice_Site	SNP	C	A	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	56314945	A	A	56314945	5	1	156	1	0	0	0	0	0	0	1	0	3551	521	18	4	1024	4	CLOCK	4	56314945	Splice_Site	SNP	C	TCGA-B0-5097-01A-01D-1421-08	1	56314945	134839331	22	9566	108	2									
TMPRSS11D	9407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	68719845	68719845	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	68719845	G	A	68719845	4	1	156	1	0	0	0	0	0	1	0	0	16253	1299	45	2	1098	2	TMPRSS11D	4	68719845	Nonsense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	12404900	68719845	122434431	23	9567											
CD180	4064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66479940	66479940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	G	66479940	T	G	66479940	3	3	156	1	0	0	0	0	1	0	0	0	2974	1725	60	5	1258	5	CD180	5	66479940	Missense_Mutation	SNP	T	TCGA-B0-5097-01A-01D-1421-08		66479940	114435320	24	9568											
TNPO1	3842	broad.mit.edu;hgsc.bcm.edu	37	5	72185719	72185719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	G	72185719	C	G	72185719	3	3	156	1	0	0	0	0	1	0	0	0	16347	680	24	4	1690	4	TNPO1	5	72185719	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	5705779	72185719	108729541	25	9569											
ATP6AP1L	92270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	81614047	81614047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	81614047	G	T	81614047	3	4	156	1	0	0	0	0	1	0	0	0	1166	991	35	4	617	4	ATP6AP1L	5	81614047	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	9428328	81614047	99301213	26	9570											
MYOT	9499	broad.mit.edu;hgsc.bcm.edu	37	5	137213306	137213306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	137213306	C	T	137213306	3	4	156	1	0	0	0	0	1	0	0	0	10101	893	31	1	639	1	MYOT	5	137213306	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	55599259	137213306	43701954	27	9571											
KIF4B	285643	broad.mit.edu;hgsc.bcm.edu	37	5	154396598	154396598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	154396598	G	T	154396598	3	4	156	1	0	0	0	0	1	0	0	0	8311	1261	44	4	3181	4	KIF4B	5	154396598	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	17183292	154396598	26518662	28	9572											
UIMC1	51720	broad.mit.edu;hgsc.bcm.edu	37	5	176402397	176402397	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	176402397	G	A	176402397	4	1	156	1	0	0	0	0	0	1	0	0	16983	1159	40	1	1979	1	UIMC1	5	176402397	Nonsense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	22005799	176402397	4512863	29	9573											
EYS	346007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	66205260	66205260	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	66205260	T	A	66205260	3	1	156	1	0	0	0	0	1	0	0	0	5334	1696	59	5	9512	5	EYS	6	66205260	Missense_Mutation	SNP	T	TCGA-B0-5097-01A-01D-1421-08		66205260	104909807	30	9574											
SNAP91	9892	broad.mit.edu;ucsc.edu	37	6	84292066	84292066	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	-	84292066	-	-	84292066	7	5	156	1	0	1	0	1	0	0	0	0	14846	507	18	0	727	0	SNAP91	6	84292066	Frame_Shift_Del	DEL	C	TCGA-B0-5097-01A-01D-1421-08	18086806	84292066	86823001	31	9575											
TCF21	6943	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	134210722	134210722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	134210722	C	A	134210722	3	1	156	1	0	0	0	0	1	0	0	0	15703	739	26	4	189	4	TCF21	6	134210722	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	49918656	134210722	36904345	32	9576											
DNAH11	8701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	21913067	21913067	+	Silent	SNP	C	C	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	21913067	C	A	21913067	2	1	156	1	0	0	0	0	0	0	0	1	4601	623	22	4		4	DNAH11	7	21913067	Silent	SNP	C	TCGA-B0-5097-01A-01D-1421-08		21913067	137225596	33	9577											
STK31	56164	broad.mit.edu	37	7	23802525	23802525	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	23802525	T	T	23802525	3	4	156	1	0	0	0	0	1	0	0	0	15308	536	19	1	1441	1	STK31	7	23802525	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	1889458	23802525	135336138	34	9578											
HIP1	3092	broad.mit.edu	37	7	75182782	75182782	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	75182782	T	T	75182782	3	4	156	1	0	0	0	0	1	0	0	0	7121	1020	36	4	888	4	HIP1	7	75182782	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	51380257	75182782	83955881	35	9579											
ZNF655	79027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99170286	99170286	+	Silent	SNP	G	G	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	99170286	G	A	99170286	2	1	156	1	0	0	0	0	0	0	0	1	18080	933	33	2		2	ZNF655	7	99170286	Silent	SNP	G	TCGA-B0-5097-01A-01D-1421-08	23987504	99170286	59968377	36	9580											
MLL3	58508	hgsc.bcm.edu;ucsc.edu	37	7	152012275	152012275	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	-	152012275	T	-	152012275	7	5	156	1	0	1	0	1	0	0	0	0	9629	1725	60	0	14421	0	MLL3	7	152012275	Frame_Shift_Del	DEL	T	TCGA-B0-5097-01A-01D-1421-08	52841989	152012275	7126388	37	9581											
CSPP1	79848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	68084731	68084731	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	68084731	A	T	68084731	3	4	156	1	0	0	0	0	1	0	0	0	3964	72	3	5	3097	5	CSPP1	8	68084731	Missense_Mutation	SNP	A	TCGA-B0-5097-01A-01D-1421-08		68084731	78279291	38	9582											
CYP11B2	1585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	143994011	143994011	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	143994011	A	T	143994011	3	4	156	1	0	0	0	0	1	0	0	0	4148	72	3	5	186	5	CYP11B2	8	143994011	Missense_Mutation	SNP	A	TCGA-B0-5097-01A-01D-1421-08	75909280	143994011	2370011	39	9583											
SVEP1	79987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	113241933	113241933	+	Silent	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	113241933	C	T	113241933	2	4	156	1	0	0	0	0	0	0	0	1	15432	912	32	2		2	SVEP1	9	113241933	Silent	SNP	C	TCGA-B0-5097-01A-01D-1421-08		113241933	27971498	40	9584											
ALAD	210	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	116154422	116154422	+	Silent	SNP	G	G	T	rs116243288	byfrequency;alternate_allele	TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	116154422	G	T	116154422	2	4	156	1	0	0	0	0	0	0	0	1	483	1280	45	4		4	ALAD	9	116154422	Silent	SNP	G	TCGA-B0-5097-01A-01D-1421-08	2912489	116154422	25059009	41	9585											
SEC61A2	55176	broad.mit.edu;hgsc.bcm.edu	37	10	12209851	12209851	+	RNA	SNP	G	G	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	12209851	G	A	12209851	1	1	156	0	1	0	0	0	0	0	0	0	14014	1015	35	2		2	SEC61A2	10	12209851	RNA	SNP	G	TCGA-B0-5097-01A-01D-1421-08		12209851	123324896	42	9586											
C11orf84	144097	broad.mit.edu	37	11	63586459	63586459	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	63586459	A	A	63586459	3	1	156	1	0	0	0	0	1	0	0	0	1669	1175	41	2	937	2	C11orf84	11	63586459	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08		63586459	71420057	43	9587											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108202714	108202714	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	108202714	A	T	108202714	4	4	156	1	0	0	0	0	0	1	0	0	1109	64	3	5	7940	5	ATM	11	108202714	Nonsense_Mutation	SNP	A	TCGA-B0-5097-01A-01D-1421-08	44616255	108202714	26803802	44	9588											
NR1H4	9971	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100930297	100930297	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	G	100930297	C	G	100930297	3	3	156	1	0	0	0	0	1	0	0	0	10626	565	20	4	746	4	NR1H4	12	100930297	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08		100930297	32921598	45	9589											
MTUS2	23281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	29600300	29600300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	29600300	C	A	29600300	3	1	156	1	0	0	0	0	1	0	0	0	9973	623	22	4	1497	4	MTUS2	13	29600300	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08		29600300	85569578	46	9590											
COG6	57511	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	40268842	40268842	+	Silent	SNP	A	A	G	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	G	40268842	A	G	40268842	2	3	156	1	0	0	0	0	0	0	0	1	3664	98	4	3		3	COG6	13	40268842	Silent	SNP	A	TCGA-B0-5097-01A-01D-1421-08	10668542	40268842	74901036	47	9591											
SPRY2	10253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	80911095	80911095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	80911095	C	T	80911095	3	4	156	1	0	0	0	0	1	0	0	0	15118	478	17	2	205	2	SPRY2	13	80911095	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	40642253	80911095	34258783	48	9592											
FLVCR2	55640	broad.mit.edu;hgsc.bcm.edu	37	14	76045408	76045408	+	Silent	SNP	C	C	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	76045408	C	A	76045408	2	1	156	1	0	0	0	0	0	0	0	1	5953	581	21	4		4	FLVCR2	14	76045408	Silent	SNP	C	TCGA-B0-5097-01A-01D-1421-08		76045408	31304132	49	9593											
RABEP2	79874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28916276	28916276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	C	28916276	G	C	28916276	3	2	156	1	0	0	0	0	1	0	0	0	12975	1280	45	4	15	4	RABEP2	16	28916276	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08		28916276	61438477	50	9594											
SALL1	6299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	51173795	51173795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	51173795	C	T	51173795	3	4	156	1	0	0	0	0	1	0	0	0	13823	507	18	2	1644	2	SALL1	16	51173795	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	22257519	51173795	39180958	51	9595											
SMARCE1	6605	broad.mit.edu;hgsc.bcm.edu	37	17	38798730	38798730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	38798730	G	A	38798730	3	1	156	1	0	0	0	0	1	0	0	0	14793	1232	43	2	1134	2	SMARCE1	17	38798730	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08		38798730	42396480	52	9596											
SDK2	54549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	71357832	71357832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	71357832	G	T	71357832	3	4	156	1	0	0	0	0	1	0	0	0	13982	1232	43	4	1088	4	SDK2	17	71357832	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	32559102	71357832	9837378	53	9597											
TYK2	7297	broad.mit.edu;ucsc.edu	37	19	10463680	10463680	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	G	10463680	G	G	10463680	3	3	156	1	0	0	0	0	1	0	0	0	16822	1667	58	5	457	5	TYK2	19	10463680	Missense_Mutation	SNP	T	TCGA-B0-5097-01A-01D-1421-08		10463680	48665303	54	9598											
EPS15L1	58513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	16535940	16535940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	C	16535940	T	C	16535940	3	2	156	1	0	0	0	0	1	0	0	0	5195	1725	60	3	1908	3	EPS15L1	19	16535940	Missense_Mutation	SNP	T	TCGA-B0-5097-01A-01D-1421-08	6072260	16535940	42593043	55	9599											
CHERP	10523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	16630029	16630029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	16630029	G	A	16630029	3	1	156	1	0	0	0	0	1	0	0	0	3338	1116	39	1	62	1	CHERP	19	16630029	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	94089	16630029	42498954	56	9600											
SLC27A1	376497	broad.mit.edu;hgsc.bcm.edu	37	19	17611525	17611525	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	G	17611525	C	G	17611525	3	3	156	1	0	0	0	0	1	0	0	0	14538	535	19	4	1514	4	SLC27A1	19	17611525	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	981496	17611525	41517458	57	9601											
PSG3	5671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	43228148	43228148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	43228148	G	T	43228148	3	4	156	1	0	0	0	0	1	0	0	0	12666	1000	35	4	17	4	PSG3	19	43228148	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08	25616623	43228148	15900835	58	9602											
GZF1	64412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	23347703	23347703	+	Silent	SNP	C	C	T	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	T	23347703	C	T	23347703	2	4	156	1	0	0	0	0	0	0	0	1	6921	477	17	2		2	GZF1	20	23347703	Silent	SNP	C	TCGA-B0-5097-01A-01D-1421-08		23347703	39677817	59	9603											
TBC1D25	4943	broad.mit.edu;hgsc.bcm.edu	37	X	48403330	48403330	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	C	48403330	G	C	48403330	3	2	156	1	0	0	0	0	1	0	0	0	15627	1290	45	4	317	4	TBC1D25	23	48403330	Missense_Mutation	SNP	G	TCGA-B0-5097-01A-01D-1421-08		48403330	106867230	60	9604											
ALAS2	212	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	55039931	55039931	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	55039931	C	A	55039931	4	1	156	1	0	0	0	0	0	1	0	0	485	864	30	4	183	4	ALAS2	23	55039931	Nonsense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	6636601	55039931	100230629	61	9605											
TEX13A	56157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	104463697	104463697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	104463697	C	A	104463697	3	1	156	1	0	0	0	0	1	0	0	0	15788	623	22	4	54	4	TEX13A	23	104463697	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	49423766	104463697	50806863	62	9606											
AFF2	2334	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	148035250	148035250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5097-01A-01D-1421-08	TCGA-B0-5097-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3af2978e-b892-4817-be05-39f020c06b5e	18771d6c-583c-4b5c-9a3f-1b5ff0c70a17	A	148035250	C	A	148035250	3	1	156	1	0	0	0	0	1	0	0	0	357	681	24	4	1631	4	AFF2	23	148035250	Missense_Mutation	SNP	C	TCGA-B0-5097-01A-01D-1421-08	43571553	148035250	7235310	63	9607											
MMEL1	79258	broad.mit.edu	37	1	2524327	2524327	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	2524327	T	C	2524327	3	2	157	1	0	0	0	0	1	0	0	0	9653	1551	54	3	413	3	MMEL1	1	2524327	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08		2524327	246726294	1	9608											
CHD5	26038	broad.mit.edu	37	1	6211094	6211094	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	6211094	C	A	6211094	3	1	157	1	0	0	0	0	1	0	0	0	3330	681	24	4	5012	4	CHD5	1	6211094	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3686767	6211094	243039527	2	9609											
ESPN	83715	broad.mit.edu	37	1	6501114	6501114	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	6501114	G	A	6501114	3	1	157	1	0	0	0	0	1	0	0	0	5256	1261	44	2	997	2	ESPN	1	6501114	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	290020	6501114	242749507	3	9610											
PIK3CD	5293	broad.mit.edu	37	1	9781596	9781596	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	9781596	C	T	9781596	3	4	157	1	0	0	0	0	1	0	0	0	11922	643	23	1	1956	1	PIK3CD	1	9781596	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3280482	9781596	239469025	4	9611											
KIF1B	23095	broad.mit.edu	37	1	10384065	10384065	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	10384065	G	A	10384065	3	1	157	1	0	0	0	0	1	0	0	0	8291	943	33	2	3919	2	KIF1B	1	10384065	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	602469	10384065	238866556	5	9612											
MTOR	2475	broad.mit.edu	37	1	11182163	11182163	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	11182163	A	G	11182163	3	3	157	1	0	0	0	0	1	0	0	0	9961	333	12	3	1010	3	MTOR	1	11182163	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	798098	11182163	238068458	6	9613											
SPEN	23013	broad.mit.edu	37	1	16261593	16261593	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	16261593	T	C	16261593	3	2	157	1	0	0	0	0	1	0	0	0	15050	1493	52	3	8900	3	SPEN	1	16261593	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5079430	16261593	232989028	7	9614											
PAQR7	164091	broad.mit.edu	37	1	26189565	26189567	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	26189567	AGA	-	26189565	7	5	157	1	0	1	0	1	0	0	0	0	11447	304	11	0	278	0	PAQR7	1	26189565	In_Frame_Del	DEL	AGA	TCGA-B0-5098-01A-01D-1421-08	9927972	26189565	223061056	8	9615											
AHDC1	27245	broad.mit.edu	37	1	27875714	27875714	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	27875714	G	A	27875714	2	1	157	1	0	0	0	0	0	0	0	1	412	1140	40	1		1	AHDC1	1	27875714	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1686149	27875714	221374907	9	9616											
EPB41	2035	broad.mit.edu	37	1	29314068	29314068	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	29314068	A	-	29314068	7	5	157	1	0	1	0	1	0	0	0	0	5153	130	5	0	121	0	EPB41	1	29314068	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	1438354	29314068	219936553	10	9617											
TINAGL1	64129	broad.mit.edu	37	1	32050813	32050813	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	32050813	C	-	32050813	7	5	157	1	0	1	0	1	0	0	0	0	15934	739	26	0	945	0	TINAGL1	1	32050813	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	2736745	32050813	217199808	11	9618											
C1orf122	127687	broad.mit.edu	37	1	38274716	38274716	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	38274716	G	A	38274716	3	1	157	1	0	0	0	0	1	0	0	0	1992	1174	41	2	314	2	C1orf122	1	38274716	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	6223903	38274716	210975905	12	9619											
TRIT1	54802	broad.mit.edu	37	1	40307451	40307451	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	40307451	C	A	40307451	3	1	157	1	0	0	0	0	1	0	0	0	16572	681	24	4	38	4	TRIT1	1	40307451	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2032735	40307451	208943170	13	9620											
ZMYND12	84217	broad.mit.edu	37	1	42914182	42914182	+	Missense_Mutation	SNP	A	A	G	rs144825054		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	42914182	A	G	42914182	3	3	157	1	0	0	0	0	1	0	0	0	17719	391	14	3	741	3	ZMYND12	1	42914182	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2606731	42914182	206336439	14	9621											
MAST2	23139	broad.mit.edu	37	1	46500672	46500672	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	46500672	G	T	46500672	3	4	157	1	0	0	0	0	1	0	0	0	9332	1000	35	4	4445	4	MAST2	1	46500672	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3586490	46500672	202749949	15	9622											
FAAH	2166	broad.mit.edu	37	1	46871324	46871324	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	46871324	G	-	46871324	7	5	157	1	0	1	0	1	0	0	0	0	5357	1000	35	0	661	0	FAAH	1	46871324	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	370652	46871324	202379297	16	9623											
DMBX1	127343	broad.mit.edu	37	1	46972769	46972769	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	46972769	G	A	46972769	2	1	157	1	0	0	0	0	0	0	0	1	4580	962	34	2		2	DMBX1	1	46972769	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	101445	46972769	202277852	17	9624											
WLS	79971	broad.mit.edu	37	1	68614299	68614299	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	68614299	G	A	68614299	2	1	157	1	0	0	0	0	0	0	0	1	17388	1045	37	1		1	WLS	1	68614299	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	21641530	68614299	180636322	18	9625											
CELSR2	1952	broad.mit.edu	37	1	109806260	109806260	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	109806260	G	A	109806260	3	1	157	1	0	0	0	0	1	0	0	0	3224	1203	42	2	4896	2	CELSR2	1	109806260	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	41191961	109806260	139444361	19	9626											
PHTF1	10745	broad.mit.edu	37	1	114243546	114243546	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	114243546	A	G	114243546	3	3	157	1	0	0	0	0	1	0	0	0	11869	188	7	3	388	3	PHTF1	1	114243546	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	4437286	114243546	135007075	20	9627											
NGF	4803	broad.mit.edu	37	1	115829215	115829215	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	115829215	G	A	115829215	3	1	157	1	0	0	0	0	1	0	0	0	10402	1116	39	1	527	1	NGF	1	115829215	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1585669	115829215	133421406	21	9628											
PTGFRN	5738	broad.mit.edu	37	1	117491858	117491858	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	117491858	A	G	117491858	3	3	157	1	0	0	0	0	1	0	0	0	12761	15	1	3	891	3	PTGFRN	1	117491858	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1662643	117491858	131758763	22	9629											
NBPF10	100132406	broad.mit.edu	37	1	145367814	145367814	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	145367814	A	G	145367814	2	3	157	1	0	0	0	0	0	0	0	1	10200	204	8	3		3	NBPF10	1	145367814	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	27875956	145367814	103882807	23	9630											
PEX11B	8799	broad.mit.edu	37	1	145522547	145522547	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	145522547	C	T	145522547	2	4	157	1	0	0	0	0	0	0	0	1	11745	738	26	2		2	PEX11B	1	145522547	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	154733	145522547	103728074	24	9631											
ADAMTSL4	54507	broad.mit.edu	37	1	150532263	150532263	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	150532263	G	A	150532263	2	1	157	1	0	0	0	0	0	0	0	1	277	1074	38	1		1	ADAMTSL4	1	150532263	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	5009716	150532263	98718358	25	9632											
TMOD4	29765	broad.mit.edu	37	1	151147019	151147019	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	151147019	A	G	151147019	3	3	157	1	0	0	0	0	1	0	0	0	16248	217	8	3	941	3	TMOD4	1	151147019	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	614756	151147019	98103602	26	9633											
ZNF687	57592	broad.mit.edu	37	1	151259818	151259818	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	151259818	T	C	151259818	3	2	157	1	0	0	0	0	1	0	0	0	18104	1551	54	3	1053	3	ZNF687	1	151259818	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	112799	151259818	97990803	27	9634											
PI4KB	5298	broad.mit.edu	37	1	151274728	151274728	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	151274728	G	A	151274728	4	1	157	1	0	0	0	0	0	1	0	0	11881	1153	40	1	907	1	PI4KB	1	151274728	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	14910	151274728	97975893	28	9635											
PI4KB	5298	broad.mit.edu	37	1	151288484	151288484	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	151288484	G	-	151288484	7	5	157	1	0	1	0	1	0	0	0	0	11881	987	35	0	2020	0	PI4KB	1	151288484	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	13756	151288484	97962137	29	9636											
TUFT1	7286	broad.mit.edu	37	1	151535065	151535065	+	Missense_Mutation	SNP	G	G	A	rs113585307		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	151535065	G	A	151535065	3	1	157	1	0	0	0	0	1	0	0	0	16784	1203	42	2	150	2	TUFT1	1	151535065	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	246581	151535065	97715556	30	9637											
RORC	6097	broad.mit.edu	37	1	151785790	151785790	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	151785790	G	A	151785790	3	1	157	1	0	0	0	0	1	0	0	0	13543	1115	39	1	473	1	RORC	1	151785790	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	250725	151785790	97464831	31	9638											
RORC	6097	broad.mit.edu	37	1	151789698	151789698	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	151789698	G	A	151789698	2	1	157	1	0	0	0	0	0	0	0	1	13543	1140	40	1		1	RORC	1	151789698	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3908	151789698	97460923	32	9639											
SPRR3	6707	broad.mit.edu	37	1	152975911	152975911	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	152975911	A	G	152975911	3	3	157	1	0	0	0	0	1	0	0	0	15115	159	6	3	417	3	SPRR3	1	152975911	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1186213	152975911	96274710	33	9640											
DENND4B	9909	broad.mit.edu	37	1	153904719	153904719	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	153904719	G	A	153904719	2	1	157	1	0	0	0	0	0	0	0	1	4436	1190	42	2		2	DENND4B	1	153904719	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	928808	153904719	95345902	34	9641											
UBAP2L	9898	broad.mit.edu	37	1	154227752	154227752	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	154227752	C	T	154227752	2	4	157	1	0	0	0	0	0	0	0	1	16850	784	28	2		2	UBAP2L	1	154227752	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	323033	154227752	95022869	35	9642											
IL6R	3570	broad.mit.edu	37	1	154408588	154408588	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	154408588	T	C	154408588	5	2	157	1	0	0	0	0	0	0	1	0	7709	1652	57	3	973	3	IL6R	1	154408588	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	180836	154408588	94842033	36	9643											
FLAD1	80308	broad.mit.edu	37	1	154965266	154965266	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	154965266	A	G	154965266	2	3	157	1	0	0	0	0	0	0	0	1	5927	79	3	3		3	FLAD1	1	154965266	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	556678	154965266	94285355	37	9644											
DCST2	127579	broad.mit.edu	37	1	154997047	154997047	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	154997047	A	G	154997047	3	3	157	1	0	0	0	0	1	0	0	0	4305	188	7	3	698	3	DCST2	1	154997047	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	31781	154997047	94253574	38	9645											
UBQLN4	56893	broad.mit.edu	37	1	156011344	156011344	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	156011344	C	-	156011344	7	5	157	1	0	1	0	1	0	0	0	0	16911	739	26	0	228	0	UBQLN4	1	156011344	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	1014297	156011344	93239277	39	9646											
NES	10763	broad.mit.edu	37	1	156642564	156642564	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	156642564	A	G	156642564	2	3	157	1	0	0	0	0	0	0	0	1	10344	175	7	3		3	NES	1	156642564	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	631220	156642564	92608057	40	9647											
KIRREL	55243	broad.mit.edu	37	1	158064480	158064480	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	158064480	C	A	158064480	3	1	157	1	0	0	0	0	1	0	0	0	8331	652	23	4	1902	4	KIRREL	1	158064480	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1421916	158064480	91186141	41	9648											
CD1B	910	broad.mit.edu	37	1	158301156	158301156	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	158301156	G	A	158301156	3	1	157	1	0	0	0	0	1	0	0	0	2977	1377	48	2	967	2	CD1B	1	158301156	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	236676	158301156	90949465	42	9649											
COPA	1314	broad.mit.edu	37	1	160295426	160295427	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	160295427	-	T	160295426	7	5	157	1	0	1	1	0	0	0	0	0	3729	1252	44	0	3296	0	COPA	1	160295426	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	1994270	160295426	88955195	43	9650											
ARHGAP30	257106	broad.mit.edu	37	1	161026313	161026313	+	Frame_Shift_Del	DEL	A	A	-	rs17854839		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	161026313	A	-	161026313	7	5	157	1	0	1	0	1	0	0	0	0	879	127	5	0	3135	0	ARHGAP30	1	161026313	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	730887	161026313	88224308	44	9651											
FAM78B	149297	broad.mit.edu	37	1	166135352	166135352	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	166135352	T	A	166135352	3	1	157	1	0	0	0	0	1	0	0	0	5634	1609	56	5	659	5	FAM78B	1	166135352	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5109039	166135352	83115269	45	9652											
ABL2	27	broad.mit.edu	37	1	179090956	179090956	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	179090956	A	G	179090956	3	3	157	1	0	0	0	0	1	0	0	0	93	391	14	3	2891	3	ABL2	1	179090956	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	12955604	179090956	70159665	46	9653											
SOAT1	6646	broad.mit.edu	37	1	179316774	179316774	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	179316774	A	G	179316774	3	3	157	1	0	0	0	0	1	0	0	0	14923	159	6	3	1199	3	SOAT1	1	179316774	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	225818	179316774	69933847	47	9654											
RNASEL	6041	broad.mit.edu	37	1	182550456	182550456	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	182550456	G	A	182550456	2	1	157	1	0	0	0	0	0	0	0	1	13429	1103	39	1		1	RNASEL	1	182550456	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3233682	182550456	66700165	48	9655											
KCNT2	343450	broad.mit.edu	37	1	196274362	196274362	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	196274362	A	G	196274362	5	3	157	1	0	0	0	0	0	0	1	0	8099	405	14	3	838	3	KCNT2	1	196274362	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	13723906	196274362	52976259	49	9656											
NAV1	89796	broad.mit.edu	37	1	201779752	201779752	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	201779752	G	A	201779752	3	1	157	1	0	0	0	0	1	0	0	0	10190	1145	40	1	4814	1	NAV1	1	201779752	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	5505390	201779752	47470869	50	9657											
PLEKHA6	22874	broad.mit.edu	37	1	204228411	204228411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	204228411	C	-	204228411	7	5	157	1	0	1	0	1	0	0	0	0	12067	507	18	0	2224	0	PLEKHA6	1	204228411	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	2448659	204228411	45022210	51	9658											
NFASC	23114	broad.mit.edu	37	1	204948496	204948496	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	204948496	T	C	204948496	3	2	157	1	0	0	0	0	1	0	0	0	10366	1667	58	3	2135	3	NFASC	1	204948496	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	720085	204948496	44302125	52	9659											
TMCC2	9911	broad.mit.edu	37	1	205238671	205238671	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	205238671	C	-	205238671	7	5	157	1	0	1	0	1	0	0	0	0	16005	506	18	0	1351	0	TMCC2	1	205238671	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	290175	205238671	44011950	53	9660											
SLC26A9	115019	broad.mit.edu	37	1	205888081	205888081	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	205888081	C	T	205888081	3	4	157	1	0	0	0	0	1	0	0	0	14537	536	19	1	540	1	SLC26A9	1	205888081	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	649410	205888081	43362540	54	9661											
C4BPA	722	broad.mit.edu	37	1	207300202	207300202	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	207300202	A	G	207300202	3	3	157	1	0	0	0	0	1	0	0	0	2251	333	12	3	873	3	C4BPA	1	207300202	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1412121	207300202	41950419	55	9662											
CR2	1380	broad.mit.edu	37	1	207643042	207643043	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	207643043	-	T	207643042	7	5	157	1	0	1	1	0	0	0	0	0	3844	101	4	0	842	0	CR2	1	207643042	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	342840	207643042	41607579	56	9663											
MARK1	4139	broad.mit.edu	37	1	220808856	220808856	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	220808856	C	T	220808856	3	4	157	1	0	0	0	0	1	0	0	0	9319	768	27	1	1307	1	MARK1	1	220808856	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	13165814	220808856	28441765	57	9664											
NVL	4931	broad.mit.edu	37	1	224505589	224505589	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	224505589	C	T	224505589	3	4	157	1	0	0	0	0	1	0	0	0	10787	507	18	2	2479	2	NVL	1	224505589	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3696733	224505589	24745032	58	9665											
LEFTY2	7044	broad.mit.edu	37	1	226128690	226128690	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	226128690	G	A	226128690	2	1	157	1	0	0	0	0	0	0	0	1	8723	962	34	2		2	LEFTY2	1	226128690	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1623101	226128690	23121931	59	9666											
RHOU	58480	broad.mit.edu	37	1	228879349	228879349	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	228879349	G	T	228879349	3	4	157	1	0	0	0	0	1	0	0	0	13358	991	35	4	649	4	RHOU	1	228879349	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2750659	228879349	20371272	60	9667											
COG2	22796	broad.mit.edu	37	1	230805234	230805234	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	230805234	G	A	230805234	3	1	157	1	0	0	0	0	1	0	0	0	3660	1087	38	1	753	1	COG2	1	230805234	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1925885	230805234	18445387	61	9668											
SIPA1L2	57568	broad.mit.edu	37	1	232581504	232581504	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	232581504	T	C	232581504	3	2	157	1	0	0	0	0	1	0	0	0	14343	1406	49	3	2096	3	SIPA1L2	1	232581504	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1776270	232581504	16669117	62	9669											
SIPA1L2	57568	broad.mit.edu	37	1	232650521	232650521	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	232650521	G	A	232650521	3	1	157	1	0	0	0	0	1	0	0	0	14343	1319	46	2	4687	2	SIPA1L2	1	232650521	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	69017	232650521	16600100	63	9670											
CNST	163882	broad.mit.edu	37	1	246810501	246810501	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	246810501	T	C	246810501	3	2	157	1	0	0	0	0	1	0	0	0	3636	1580	55	3	1028	3	CNST	1	246810501	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	14159980	246810501	2440120	64	9671											
AHCTF1	25909	broad.mit.edu	37	1	247007131	247007131	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	247007131	T	-	247007131	7	5	157	1	0	1	0	1	0	0	0	0	408	1725	60	0	321	0	AHCTF1	1	247007131	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	196630	247007131	2243490	65	9672											
AHCTF1	25909	broad.mit.edu	37	1	247024444	247024444	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	247024444	T	C	247024444	3	2	157	1	0	0	0	0	1	0	0	0	408	1609	56	3	2943	3	AHCTF1	1	247024444	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	17313	247024444	2226177	66	9673											
OR2T34	127068	broad.mit.edu	37	1	248738032	248738034	+	In_Frame_Del	DEL	CTG	CTG	-	rs147194614		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	248738034	CTG	-	248738032	7	5	157	1	0	1	0	1	0	0	0	0	11032	912	32	0	933	0	OR2T34	1	248738032	In_Frame_Del	DEL	CTG	TCGA-B0-5098-01A-01D-1421-08	1713588	248738032	512589	67	9674											
NOL10	79954	broad.mit.edu	37	2	10729704	10729704	+	Splice_Site	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	10729704	T	-	10729704	8	5	157	1	0	1	0	1	0	0	1	0	10527	1623	56	0	486	0	NOL10	2	10729704	Splice_Site	DEL	T	TCGA-B0-5098-01A-01D-1421-08		10729704	232469669	68	9675											
SMC6	79677	broad.mit.edu	37	2	17902257	17902257	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	17902257	T	G	17902257	3	3	157	1	0	0	0	0	1	0	0	0	14800	1493	52	5	2452	5	SMC6	2	17902257	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	7172553	17902257	225297116	69	9676											
MSGN1	343930	broad.mit.edu	37	2	17998261	17998261	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	17998261	G	A	17998261	3	1	157	1	0	0	0	0	1	0	0	0	9876	1203	42	2	478	2	MSGN1	2	17998261	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	96004	17998261	225201112	70	9677											
APOB	338	broad.mit.edu	37	2	21233356	21233356	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	21233356	T	C	21233356	2	2	157	1	0	0	0	0	0	0	0	1	785	1451	51	3		3	APOB	2	21233356	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	3235095	21233356	221966017	71	9678											
ATAD2B	54454	broad.mit.edu	37	2	23977158	23977158	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	23977158	A	G	23977158	3	3	157	1	0	0	0	0	1	0	0	0	1072	159	6	3	158	3	ATAD2B	2	23977158	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2743802	23977158	219222215	72	9679											
ATAD2B	54454	broad.mit.edu	37	2	24042679	24042682	+	Frame_Shift_Del	DEL	TGAG	TGAG	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	24042682	TGAG	-	24042679	7	5	157	1	0	1	0	1	0	0	0	0	1072	1567	55	0	2219	0	ATAD2B	2	24042679	Frame_Shift_Del	DEL	TGAG	TCGA-B0-5098-01A-01D-1421-08	65521	24042679	219156694	73	9680											
TP53I3	9540	broad.mit.edu	37	2	24305872	24305872	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	24305872	G	A	24305872	4	1	157	1	0	0	0	0	0	1	0	0	16399	1299	45	2	725	2	TP53I3	2	24305872	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	263193	24305872	218893501	74	9681											
KIF3C	3797	broad.mit.edu	37	2	26203973	26203973	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	26203973	C	T	26203973	3	4	157	1	0	0	0	0	1	0	0	0	8309	652	23	1	1599	1	KIF3C	2	26203973	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1898101	26203973	216995400	75	9682											
HADHA	3030	broad.mit.edu	37	2	26416536	26416536	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	26416536	C	T	26416536	3	4	157	1	0	0	0	0	1	0	0	0	6950	478	17	2	512	2	HADHA	2	26416536	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	212563	26416536	216782837	76	9683											
MPV17	4358	broad.mit.edu	37	2	27535925	27535925	+	Missense_Mutation	SNP	C	C	A	rs140992482		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	27535925	C	A	27535925	3	1	157	1	0	0	0	0	1	0	0	0	9752	652	23	4	432	4	MPV17	2	27535925	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1119389	27535925	215663448	77	9684											
PLB1	151056	broad.mit.edu	37	2	28841245	28841245	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	28841245	C	T	28841245	2	4	157	1	0	0	0	0	0	0	0	1	12031	639	23	1		1	PLB1	2	28841245	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1305320	28841245	214358128	78	9685											
C2orf71	388939	broad.mit.edu	37	2	29294843	29294843	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	29294843	C	T	29294843	3	4	157	1	0	0	0	0	1	0	0	0	2193	710	25	2	1589	2	C2orf71	2	29294843	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	453598	29294843	213904530	79	9686											
STRN	6801	broad.mit.edu	37	2	37193392	37193392	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	37193392	A	G	37193392	3	3	157	1	0	0	0	0	1	0	0	0	15341	159	6	3	2199	3	STRN	2	37193392	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	7898549	37193392	206005981	80	9687											
HEATR5B	54497	broad.mit.edu	37	2	37291914	37291914	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	37291914	C	G	37291914	3	3	157	1	0	0	0	0	1	0	0	0	7039	478	17	4	4770	4	HEATR5B	2	37291914	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	98522	37291914	205907459	81	9688											
PRKD3	23683	broad.mit.edu	37	2	37501708	37501708	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	37501708	C	T	37501708	3	4	157	1	0	0	0	0	1	0	0	0	12530	855	30	2	1201	2	PRKD3	2	37501708	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	209794	37501708	205697665	82	9689											
THADA	63892	broad.mit.edu	37	2	43801837	43801837	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	43801837	G	A	43801837	3	1	157	1	0	0	0	0	1	0	0	0	15852	1145	40	1	4606	1	THADA	2	43801837	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	6300129	43801837	199397536	83	9690											
PLEKHH2	130271	broad.mit.edu	37	2	43973054	43973054	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	43973054	C	T	43973054	3	4	157	1	0	0	0	0	1	0	0	0	12084	681	24	2	3695	2	PLEKHH2	2	43973054	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	171217	43973054	199226319	84	9691											
LRPPRC	10128	broad.mit.edu	37	2	44145522	44145522	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	44145522	C	T	44145522	4	4	157	1	0	0	0	0	0	1	0	0	8972	595	21	2	1316	2	LRPPRC	2	44145522	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	172468	44145522	199053851	85	9692											
LRPPRC	10128	broad.mit.edu	37	2	44175571	44175571	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	44175571	A	G	44175571	3	3	157	1	0	0	0	0	1	0	0	0	8972	72	3	3	2450	3	LRPPRC	2	44175571	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	30049	44175571	199023802	86	9693											
FBXO11	80204	broad.mit.edu	37	2	48050443	48050443	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	48050443	T	-	48050443	7	5	157	1	0	1	0	1	0	0	0	0	5734	1606	56	0	1466	0	FBXO11	2	48050443	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	3874872	48050443	195148930	87	9694											
CCDC104	112942	broad.mit.edu	37	2	55749245	55749245	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	55749245	T	C	55749245	2	2	157	1	0	0	0	0	0	0	0	1	2741	1461	51	3		3	CCDC104	2	55749245	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	7698802	55749245	187450128	88	9695											
SERTAD2	9792	broad.mit.edu	37	2	64863637	64863637	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	64863637	A	G	64863637	2	3	157	1	0	0	0	0	0	0	0	1	14134	407	15	3		3	SERTAD2	2	64863637	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	9114392	64863637	178335736	89	9696											
RAB1A	5861	broad.mit.edu	37	2	65316203	65316203	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	65316203	T	C	65316203	5	2	157	1	0	0	0	0	0	0	1	0	12918	1565	54	3	335	3	RAB1A	2	65316203	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	452566	65316203	177883170	90	9697											
ADD2	119	broad.mit.edu	37	2	70910816	70910816	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	70910816	G	A	70910816	2	1	157	1	0	0	0	0	0	0	0	1	305	1103	39	1		1	ADD2	2	70910816	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	5594613	70910816	172288557	91	9698											
ATP6V1B1	525	broad.mit.edu	37	2	71189971	71189971	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	71189971	G	A	71189971	3	1	157	1	0	0	0	0	1	0	0	0	1178	1291	45	2	884	2	ATP6V1B1	2	71189971	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	279155	71189971	172009402	92	9699											
ZNF638	27332	broad.mit.edu	37	2	71654527	71654527	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	71654527	T	C	71654527	3	2	157	1	0	0	0	0	1	0	0	0	18067	1493	52	3	5618	3	ZNF638	2	71654527	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	464556	71654527	171544846	93	9700											
EXOC6B	23233	broad.mit.edu	37	2	72725651	72725651	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	72725651	A	-	72725651	7	5	157	1	0	1	0	1	0	0	0	0	5311	127	5	0	1206	0	EXOC6B	2	72725651	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	1071124	72725651	170473722	94	9701											
CTNNA2	1496	broad.mit.edu	37	2	80097023	80097023	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	80097023	A	G	80097023	3	3	157	1	0	0	0	0	1	0	0	0	4015	333	12	3	561	3	CTNNA2	2	80097023	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	7371372	80097023	163102350	95	9702											
SNRNP200	23020	broad.mit.edu	37	2	96943382	96943382	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	96943382	A	G	96943382	2	3	157	1	0	0	0	0	0	0	0	1	14865	407	15	3		3	SNRNP200	2	96943382	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	16846359	96943382	146255991	96	9703											
MAP4K4	9448	broad.mit.edu	37	2	102501664	102501664	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	102501664	T	A	102501664	3	1	157	1	0	0	0	0	1	0	0	0	9269	1435	50	5	3454	5	MAP4K4	2	102501664	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5558282	102501664	140697709	97	9704											
RANBP2	5903	broad.mit.edu	37	2	109371408	109371408	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	109371408	G	A	109371408	3	1	157	1	0	0	0	0	1	0	0	0	13041	1319	46	2	2312	2	RANBP2	2	109371408	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	6869744	109371408	133827965	98	9705											
MERTK	10461	broad.mit.edu	37	2	112751965	112751965	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	112751965	A	G	112751965	3	3	157	1	0	0	0	0	1	0	0	0	9486	439	16	3	1468	3	MERTK	2	112751965	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3380557	112751965	130447408	99	9706											
NEB	4703	broad.mit.edu	37	2	152534241	152534241	+	Silent	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	152534241	G	C	152534241	2	2	157	1	0	0	0	0	0	0	0	1	10309	958	34	4		4	NEB	2	152534241	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	39782276	152534241	90665132	100	9707											
ACVR1	90	broad.mit.edu	37	2	158630598	158630598	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	158630598	A	G	158630598	5	3	157	1	0	0	0	0	0	0	1	0	220	405	14	3	908	3	ACVR1	2	158630598	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	6096357	158630598	84568775	101	9708											
BAZ2B	29994	broad.mit.edu	37	2	160295144	160295144	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	160295144	C	A	160295144	3	1	157	1	0	0	0	0	1	0	0	0	1332	680	24	4	5663	4	BAZ2B	2	160295144	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1664546	160295144	82904229	102	9709											
SLC38A11	151258	broad.mit.edu	37	2	165768159	165768159	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	165768159	A	G	165768159	3	3	157	1	0	0	0	0	1	0	0	0	14616	14	1	3	450	3	SLC38A11	2	165768159	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	5473015	165768159	77431214	103	9710											
XIRP2	129446	broad.mit.edu	37	2	168099974	168099974	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	168099974	C	A	168099974	3	1	157	1	0	0	0	0	1	0	0	0	17442	565	20	4	2102	4	XIRP2	2	168099974	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2331815	168099974	75099399	104	9711											
LRP2	4036	broad.mit.edu	37	2	170030631	170030631	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	170030631	T	C	170030631	2	2	157	1	0	0	0	0	0	0	0	1	8963	1722	60	3		3	LRP2	2	170030631	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1930657	170030631	73168742	105	9712											
MYO3B	140469	broad.mit.edu	37	2	171092598	171092598	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	171092598	C	A	171092598	3	1	157	1	0	0	0	0	1	0	0	0	10084	681	24	4	727	4	MYO3B	2	171092598	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1061967	171092598	72106775	106	9713											
TTN	7273	broad.mit.edu	37	2	179400235	179400235	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	179400235	G	A	179400235	4	1	157	1	0	0	0	0	0	1	0	0	16747	1153	40	1	6892	1	TTN	2	179400235	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	8307637	179400235	63799138	107	9714											
TTN	7273	broad.mit.edu	37	2	179604723	179604723	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	179604723	C	A	179604723	3	1	157	1	0	0	0	0	1	0	0	0	16747	681	24	4	91552	4	TTN	2	179604723	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	204488	179604723	63594650	108	9715											
HECW2	57520	broad.mit.edu	37	2	197092917	197092917	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	197092917	G	T	197092917	3	4	157	1	0	0	0	0	1	0	0	0	7050	1232	43	4	924	4	HECW2	2	197092917	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	17488194	197092917	46106456	109	9716											
HECW2	57520	broad.mit.edu	37	2	197157345	197157345	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	197157345	T	C	197157345	3	2	157	1	0	0	0	0	1	0	0	0	7050	1783	62	3	1838	3	HECW2	2	197157345	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	64428	197157345	46042028	110	9717											
ALS2	57679	broad.mit.edu	37	2	202591542	202591542	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	202591542	T	C	202591542	2	2	157	1	0	0	0	0	0	0	0	1	550	1548	54	3		3	ALS2	2	202591542	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5434197	202591542	40607831	111	9718											
RAPH1	65059	broad.mit.edu	37	2	204304389	204304389	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	204304389	C	T	204304389	3	4	157	1	0	0	0	0	1	0	0	0	13063	884	31	1	232	1	RAPH1	2	204304389	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1712847	204304389	38894984	112	9719											
NRP2	8828	broad.mit.edu	37	2	206562300	206562300	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	206562300	G	A	206562300	3	1	157	1	0	0	0	0	1	0	0	0	10668	942	33	2	112	2	NRP2	2	206562300	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2257911	206562300	36637073	113	9720											
MYL1	4632	broad.mit.edu	37	2	211159122	211159122	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	211159122	C	G	211159122	3	3	157	1	0	0	0	0	1	0	0	0	10050	835	29	4	271	4	MYL1	2	211159122	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	4596822	211159122	32040251	114	9721											
IKZF2	22807	broad.mit.edu	37	2	214012391	214012392	+	Frame_Shift_Ins	INS	-	-	AC			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	AC	214012392	-	AC	214012391	7	5	157	1	0	1	1	0	0	0	0	0	7622	957	33	0		0	IKZF2	2	214012391	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	2853269	214012391	29186982	115	9722											
CCDC108	255101	broad.mit.edu	37	2	219900111	219900111	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	219900111	T	-	219900111	7	5	157	1	0	1	0	1	0	0	0	0	2745	1722	60	0	5416	0	CCDC108	2	219900111	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	5887720	219900111	23299262	116	9723											
DNAJB2	3300	broad.mit.edu	37	2	220149689	220149689	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	220149689	T	C	220149689	3	2	157	1	0	0	0	0	1	0	0	0	4622	1551	54	3	985	3	DNAJB2	2	220149689	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	249578	220149689	23049684	117	9724											
COL4A4	1286	broad.mit.edu	37	2	227945177	227945177	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	227945177	T	C	227945177	2	2	157	1	0	0	0	0	0	0	0	1	3695	1606	56	3		3	COL4A4	2	227945177	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	7795488	227945177	15254196	118	9725											
TRIP12	9320	broad.mit.edu	37	2	230654396	230654396	+	Silent	SNP	C	C	T	rs146874504	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	230654396	C	T	230654396	2	4	157	1	0	0	0	0	0	0	0	1	16568	523	19	1		1	TRIP12	2	230654396	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2709219	230654396	12544977	119	9726											
ITM2C	81618	broad.mit.edu	37	2	231741659	231741659	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	231741659	T	G	231741659	3	3	157	1	0	0	0	0	1	0	0	0	7921	1580	55	5	552	5	ITM2C	2	231741659	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1087263	231741659	11457714	120	9727											
PSMD1	5707	broad.mit.edu	37	2	231948335	231948335	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	231948335	A	G	231948335	3	3	157	1	0	0	0	0	1	0	0	0	12702	188	7	3	1634	3	PSMD1	2	231948335	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	206676	231948335	11251038	121	9728											
DIS3L2	129563	broad.mit.edu	37	2	233195446	233195446	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	233195446	G	T	233195446	3	4	157	1	0	0	0	0	1	0	0	0	4539	1087	38	4	2028	4	DIS3L2	2	233195446	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1247111	233195446	10003927	122	9729											
ECEL1	9427	broad.mit.edu	37	2	233347836	233347836	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	233347836	A	G	233347836	2	3	157	1	0	0	0	0	0	0	0	1	4893	214	8	3		3	ECEL1	2	233347836	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	152390	233347836	9851537	123	9730											
NGEF	25791	broad.mit.edu	37	2	233839410	233839410	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	233839410	A	G	233839410	3	3	157	1	0	0	0	0	1	0	0	0	10401	333	12	3	2108	3	NGEF	2	233839410	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	491574	233839410	9359963	124	9731											
UGT1A1	54658	broad.mit.edu	37	2	234669127	234669127	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	234669127	C	T	234669127	3	4	157	1	0	0	0	0	1	0	0	0	16956	893	31	1	196	1	UGT1A1	2	234669127	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	829717	234669127	8530246	125	9732											
SEC13	6396	broad.mit.edu	37	3	10346828	10346828	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	10346828	G	A	10346828	2	1	157	1	0	0	0	0	0	0	0	1	13993	1136	40	1		1	SEC13	3	10346828	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08		10346828	187675602	126	9733											
MLH1	4292	broad.mit.edu	37	3	37070364	37070365	+	Frame_Shift_Ins	INS	-	-	CATTAACCTCA	rs63751146		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	CATTAACCTCA	37070365	-	CATTAACCTCA	37070364	7	5	157	1	0	1	1	0	0	0	0	0	9624	1435	50	0	1549	0	MLH1	3	37070364	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	26723536	37070364	160952066	127	9734											
LRRFIP2	9209	broad.mit.edu	37	3	37125271	37125271	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	37125271	T	-	37125271	7	5	157	1	0	1	0	1	0	0	0	0	9035	1490	52	0	1071	0	LRRFIP2	3	37125271	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	54907	37125271	160897159	128	9735											
PLCD1	5333	broad.mit.edu	37	3	38050545	38050545	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	38050545	C	A	38050545	3	1	157	1	0	0	0	0	1	0	0	0	12038	623	22	4	579	4	PLCD1	3	38050545	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	925274	38050545	159971885	129	9736											
ZNF619	285267	broad.mit.edu	37	3	40524165	40524165	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	40524165	G	-	40524165	7	5	157	1	0	1	0	1	0	0	0	0	18055	1348	47	0	421	0	ZNF619	3	40524165	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	2473620	40524165	157498265	130	9737											
KIF15	56992	broad.mit.edu	37	3	44844357	44844357	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	44844357	A	G	44844357	3	3	157	1	0	0	0	0	1	0	0	0	8284	179	7	3	1615	3	KIF15	3	44844357	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	4320192	44844357	153178073	131	9738											
SETD2	29072	broad.mit.edu	37	3	47155460	47155460	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	47155460	T	G	47155460	3	3	157	1	0	0	0	0	1	0	0	0	14144	1812	63	5	3141	5	SETD2	3	47155460	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2311103	47155460	150866970	132	9739											
SMARCC1	6599	broad.mit.edu	37	3	47677513	47677513	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	47677513	T	C	47677513	5	2	157	1	0	0	0	0	0	0	1	0	14788	1594	55	3	851	3	SMARCC1	3	47677513	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	522053	47677513	150344917	133	9740											
USP19	10869	broad.mit.edu	37	3	49153190	49153190	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	49153190	A	G	49153190	2	3	157	1	0	0	0	0	0	0	0	1	17062	214	8	3		3	USP19	3	49153190	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1475677	49153190	148869240	134	9741											
CCDC36	339834	broad.mit.edu	37	3	49293670	49293670	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	49293670	A	C	49293670	3	2	157	1	0	0	0	0	1	0	0	0	2810	188	7	5	766	5	CCDC36	3	49293670	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	140480	49293670	148728760	135	9742											
MST1	4485	broad.mit.edu	37	3	49721844	49721844	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	49721844	A	G	49721844	3	3	157	1	0	0	0	0	1	0	0	0	9897	275	10	3	266	3	MST1	3	49721844	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	428174	49721844	148300586	136	9743											
RBM6	10180	broad.mit.edu	37	3	50005783	50005783	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	50005783	A	T	50005783	3	4	157	1	0	0	0	0	1	0	0	0	13157	246	9	5	931	5	RBM6	3	50005783	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	283939	50005783	148016647	137	9744											
SUCLG2	8801	broad.mit.edu	37	3	67546326	67546326	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	67546326	T	C	67546326	3	2	157	1	0	0	0	0	1	0	0	0	15377	1464	51	3	496	3	SUCLG2	3	67546326	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	17540543	67546326	130476104	138	9745											
TMF1	7110	broad.mit.edu	37	3	69088741	69088741	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	69088741	T	-	69088741	7	5	157	1	0	1	0	1	0	0	0	0	16240	1606	56	0	1541	0	TMF1	3	69088741	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	1542415	69088741	128933689	139	9746											
ROBO2	6092	broad.mit.edu	37	3	77542422	77542422	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	77542422	T	A	77542422	3	1	157	1	0	0	0	0	1	0	0	0	13527	1493	52	5	715	5	ROBO2	3	77542422	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	8453681	77542422	120480008	140	9747											
OR5K4	403278	broad.mit.edu	37	3	98072884	98072884	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	98072884	C	A	98072884	3	1	157	1	0	0	0	0	1	0	0	0	11176	912	32	4	189	4	OR5K4	3	98072884	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	20530462	98072884	99949546	141	9748											
TBC1D23	55773	broad.mit.edu	37	3	100042461	100042461	+	Silent	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	100042461	T	A	100042461	2	1	157	1	0	0	0	0	0	0	0	1	15625	1509	53	5		5	TBC1D23	3	100042461	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1969577	100042461	97979969	142	9749											
CCDC54	84692	broad.mit.edu	37	3	107096890	107096890	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	107096890	A	G	107096890	3	3	157	1	0	0	0	0	1	0	0	0	2826	381	14	3	458	3	CCDC54	3	107096890	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	7054429	107096890	90925540	143	9750											
MORC1	27136	broad.mit.edu	37	3	108836867	108836867	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	108836867	G	A	108836867	3	1	157	1	0	0	0	0	1	0	0	0	9708	1087	38	1	3026	1	MORC1	3	108836867	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1739977	108836867	89185563	144	9751											
PHLDB2	90102	broad.mit.edu	37	3	111685552	111685552	+	Splice_Site	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	111685552	T	G	111685552	5	3	157	1	0	0	0	0	0	0	1	0	11859	1652	57	5	3305	5	PHLDB2	3	111685552	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2848685	111685552	86336878	145	9752											
TAGLN3	29114	broad.mit.edu	37	3	111719762	111719762	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	111719762	C	A	111719762	2	1	157	1	0	0	0	0	0	0	0	1	15552	639	23	4		4	TAGLN3	3	111719762	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	34210	111719762	86302668	146	9753											
GPR156	165829	broad.mit.edu	37	3	119885981	119885981	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	119885981	A	G	119885981	2	3	157	1	0	0	0	0	0	0	0	1	6668	175	7	3		3	GPR156	3	119885981	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	8166219	119885981	78136449	147	9754											
KPNA1	3836	broad.mit.edu	37	3	122170886	122170886	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	122170886	G	A	122170886	3	1	157	1	0	0	0	0	1	0	0	0	8436	971	34	2	1058	2	KPNA1	3	122170886	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2284905	122170886	75851544	148	9755											
ADCY5	111	broad.mit.edu	37	3	123019001	123019001	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	123019001	C	T	123019001	3	4	157	1	0	0	0	0	1	0	0	0	297	884	31	1	947	1	ADCY5	3	123019001	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	848115	123019001	75003429	149	9756											
ADCY5	111	broad.mit.edu	37	3	123044258	123044258	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	123044258	T	C	123044258	3	2	157	1	0	0	0	0	1	0	0	0	297	1464	51	3	1842	3	ADCY5	3	123044258	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	25257	123044258	74978172	150	9757											
SLC12A8	84561	broad.mit.edu	37	3	124930170	124930170	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	124930170	C	T	124930170	2	4	157	1	0	0	0	0	0	0	0	1	14402	680	24	2		2	SLC12A8	3	124930170	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1885912	124930170	73092260	151	9758											
PLXNA1	5361	broad.mit.edu	37	3	126708217	126708217	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	126708217	C	T	126708217	2	4	157	1	0	0	0	0	0	0	0	1	12126	796	28	2		2	PLXNA1	3	126708217	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1778047	126708217	71314213	152	9759											
TMCC1	23023	broad.mit.edu	37	3	129546961	129546961	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	129546961	G	A	129546961	2	1	157	1	0	0	0	0	0	0	0	1	16004	1136	40	1		1	TMCC1	3	129546961	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2838744	129546961	68475469	153	9760											
AMOTL2	51421	broad.mit.edu	37	3	134086562	134086562	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	134086562	G	-	134086562	7	5	157	1	0	1	0	1	0	0	0	0	584	1000	35	0	1556	0	AMOTL2	3	134086562	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	4539601	134086562	63935868	154	9761											
ESYT3	83850	broad.mit.edu	37	3	138187722	138187725	+	Splice_Site	DEL	GAGT	GAGT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	138187725	GAGT	-	138187722	8	5	157	1	0	1	0	1	0	0	1	0	5268	956	33	0	1487	0	ESYT3	3	138187722	Splice_Site	DEL	GAGT	TCGA-B0-5098-01A-01D-1421-08	4101160	138187722	59834708	155	9762											
MRPS22	56945	broad.mit.edu	37	3	139062900	139062900	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	139062900	G	A	139062900	4	1	157	1	0	0	0	0	0	1	0	0	9840	1357	47	2	34	2	MRPS22	3	139062900	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	875178	139062900	58959530	156	9763											
PLSCR4	57088	broad.mit.edu	37	3	145917688	145917688	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	145917688	G	A	145917688	3	1	157	1	0	0	0	0	1	0	0	0	12119	1029	36	2	469	2	PLSCR4	3	145917688	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	6854788	145917688	52104742	157	9764											
MED12L	116931	broad.mit.edu	37	3	150908555	150908555	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	150908555	T	C	150908555	3	2	157	1	0	0	0	0	1	0	0	0	9436	1551	54	3	1855	3	MED12L	3	150908555	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	4990867	150908555	47113875	158	9765											
IGSF10	285313	broad.mit.edu	37	3	151156202	151156202	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	151156202	T	C	151156202	2	2	157	1	0	0	0	0	0	0	0	1	7604	1606	56	3		3	IGSF10	3	151156202	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	247647	151156202	46866228	159	9766											
GPR149	344758	broad.mit.edu	37	3	154146817	154146817	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	154146817	G	A	154146817	2	1	157	1	0	0	0	0	0	0	0	1	6661	1048	37	1		1	GPR149	3	154146817	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2990615	154146817	43875613	160	9767											
SERPINI1	5274	broad.mit.edu	37	3	167508322	167508322	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	167508322	A	G	167508322	3	3	157	1	0	0	0	0	1	0	0	0	14131	217	8	3	419	3	SERPINI1	3	167508322	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	13361505	167508322	30514108	161	9768											
USP13	8975	broad.mit.edu	37	3	179478997	179478997	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	179478997	C	T	179478997	2	4	157	1	0	0	0	0	0	0	0	1	17056	755	27	1		1	USP13	3	179478997	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	11970675	179478997	18543433	162	9769											
FAM131A	131408	broad.mit.edu	37	3	184062584	184062584	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	184062584	C	A	184062584	2	1	157	1	0	0	0	0	0	0	0	1	5443	610	22	4		4	FAM131A	3	184062584	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	4583587	184062584	13959846	163	9770											
LPP	4026	broad.mit.edu	37	3	188590487	188590487	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	188590487	A	G	188590487	3	3	157	1	0	0	0	0	1	0	0	0	8930	188	7	3	1676	3	LPP	3	188590487	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	4527903	188590487	9431943	164	9771											
ATP13A3	79572	broad.mit.edu	37	3	194151926	194151926	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	194151926	G	T	194151926	3	4	157	1	0	0	0	0	1	0	0	0	1125	962	34	4	1273	4	ATP13A3	3	194151926	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	5561439	194151926	3870504	165	9772											
TNK2	10188	broad.mit.edu	37	3	195595228	195595229	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	195595229	-	G	195595228	7	5	157	1	0	1	1	0	0	0	0	0	16330	755	27	0	1236	0	TNK2	3	195595228	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	1443302	195595228	2427202	166	9773											
PCYT1A	5130	broad.mit.edu	37	3	195969503	195969503	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	195969503	A	-	195969503	7	5	157	1	0	1	0	1	0	0	0	0	11617	127	5	0	624	0	PCYT1A	3	195969503	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	374275	195969503	2052927	167	9774											
NOP14	8602	broad.mit.edu	37	4	2955332	2955332	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	2955332	G	A	2955332	3	1	157	1	0	0	0	0	1	0	0	0	10543	1145	40	1	1976	1	NOP14	4	2955332	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08		2955332	188198944	168	9775											
GRK4	2868	broad.mit.edu	37	4	3015545	3015545	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	3015545	G	A	3015545	3	1	157	1	0	0	0	0	1	0	0	0	6798	1029	36	2	761	2	GRK4	4	3015545	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	60213	3015545	188138731	169	9776											
ABLIM2	84448	broad.mit.edu	37	4	8021390	8021390	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	8021390	C	T	8021390	3	4	157	1	0	0	0	0	1	0	0	0	95	536	19	1	608	1	ABLIM2	4	8021390	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	5005845	8021390	183132886	170	9777											
TLR10	81793	broad.mit.edu	37	4	38775818	38775818	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	38775818	A	G	38775818	3	3	157	1	0	0	0	0	1	0	0	0	15962	188	7	3	1045	3	TLR10	4	38775818	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	30754428	38775818	152378458	171	9778											
KIAA1211	57482	broad.mit.edu	37	4	57182200	57182200	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	57182200	G	A	57182200	2	1	157	1	0	0	0	0	0	0	0	1	8222	1132	40	1		1	KIAA1211	4	57182200	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	18406382	57182200	133972076	172	9779											
IGFBP7	3490	broad.mit.edu	37	4	57898593	57898593	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	57898593	T	-	57898593	7	5	157	1	0	1	0	1	0	0	0	0	7591	1623	56	0	28	0	IGFBP7	4	57898593	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	716393	57898593	133255683	173	9780											
IGFBP7	3490	broad.mit.edu	37	4	57898642	57898642	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	57898642	G	A	57898642	3	1	157	1	0	0	0	0	1	0	0	0	7591	1294	45	2	77	2	IGFBP7	4	57898642	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	49	57898642	133255634	174	9781											
EPHA5	2044	broad.mit.edu	37	4	66231674	66231674	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	66231674	T	C	66231674	3	2	157	1	0	0	0	0	1	0	0	0	5172	1696	59	3	1119	3	EPHA5	4	66231674	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	8333032	66231674	124922602	175	9782											
LRIT3	345193	broad.mit.edu	37	4	110791607	110791607	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	110791607	A	G	110791607	3	3	157	1	0	0	0	0	1	0	0	0	8956	159	6	3	1577	3	LRIT3	4	110791607	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	44559933	110791607	80362669	176	9783											
ANXA5	308	broad.mit.edu	37	4	122604561	122604561	+	Silent	SNP	G	G	T	rs144170580		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	122604561	G	T	122604561	2	4	157	1	0	0	0	0	0	0	0	1	721	987	35	4		4	ANXA5	4	122604561	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	11812954	122604561	68549715	177	9784											
MFSD8	256471	broad.mit.edu	37	4	128842707	128842707	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	128842707	T	C	128842707	3	2	157	1	0	0	0	0	1	0	0	0	9545	1406	49	3	242	3	MFSD8	4	128842707	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	6238146	128842707	62311569	178	9785											
INPP4B	8821	broad.mit.edu	37	4	143007357	143007357	+	Silent	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	143007357	G	T	143007357	2	4	157	1	0	0	0	0	0	0	0	1	7760	1161	41	4		4	INPP4B	4	143007357	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	14164650	143007357	48146919	179	9786											
NR3C2	4306	broad.mit.edu	37	4	149075708	149075708	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	149075708	G	A	149075708	3	1	157	1	0	0	0	0	1	0	0	0	10638	1029	36	2	615	2	NR3C2	4	149075708	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	6068351	149075708	42078568	180	9787											
FGA	2243	broad.mit.edu	37	4	155508013	155508013	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	155508013	G	A	155508013	3	1	157	1	0	0	0	0	1	0	0	0	5837	1058	37	1	2084	1	FGA	4	155508013	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	6432305	155508013	35646263	181	9788											
FAM198B	51313	broad.mit.edu	37	4	159092386	159092386	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	159092386	A	G	159092386	2	3	157	1	0	0	0	0	0	0	0	1	5533	69	3	3		3	FAM198B	4	159092386	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3584373	159092386	32061890	182	9789											
CLCN3	1182	broad.mit.edu	37	4	170625248	170625248	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	170625248	T	C	170625248	3	2	157	1	0	0	0	0	1	0	0	0	3466	1580	55	3	1697	3	CLCN3	4	170625248	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	11532862	170625248	20529028	183	9790											
ACSL1	2180	broad.mit.edu	37	4	185697722	185697722	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	185697722	T	C	185697722	3	2	157	1	0	0	0	0	1	0	0	0	177	1512	53	3	1484	3	ACSL1	4	185697722	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	15072474	185697722	5456554	184	9791											
FAT1	2195	broad.mit.edu	37	4	187540370	187540370	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	187540370	A	G	187540370	3	3	157	1	0	0	0	0	1	0	0	0	5696	188	7	3	6468	3	FAT1	4	187540370	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1842648	187540370	3613906	185	9792											
ZFP42	132625	broad.mit.edu	37	4	188924487	188924487	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	188924487	C	-	188924487	7	5	157	1	0	1	0	1	0	0	0	0	17662	739	26	0	528	0	ZFP42	4	188924487	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	1384117	188924487	2229789	186	9793											
BRD9	65980	broad.mit.edu	37	5	884146	884146	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	884146	C	T	884146	2	4	157	1	0	0	0	0	0	0	0	1	1509	639	23	1		1	BRD9	5	884146	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08		884146	180031114	187	9794											
ANKH	56172	broad.mit.edu	37	5	14713040	14713040	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	14713040	G	A	14713040	2	1	157	1	0	0	0	0	0	0	0	1	627	958	34	2		2	ANKH	5	14713040	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	13828894	14713040	166202220	188	9795											
CDH10	1008	broad.mit.edu	37	5	24488218	24488219	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	24488219	-	T	24488218	7	5	157	1	0	1	1	0	0	0	0	0	3098	922	32	0	449	0	CDH10	5	24488218	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	9775178	24488218	156427042	189	9796											
SEPP1	6414	broad.mit.edu	37	5	42801175	42801175	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	42801175	C	T	42801175	3	4	157	1	0	0	0	0	1	0	0	0	14070	797	28	2	356	2	SEPP1	5	42801175	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	18312957	42801175	138114085	190	9797											
NNT	23530	broad.mit.edu	37	5	43609438	43609438	+	Silent	SNP	T	T	A	rs143463864	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	43609438	T	A	43609438	2	1	157	1	0	0	0	0	0	0	0	1	10517	1567	55	5		5	NNT	5	43609438	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	808263	43609438	137305822	191	9798											
MAST4	375449	broad.mit.edu	37	5	66386058	66386058	+	Splice_Site	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	66386058	A	T	66386058	5	4	157	1	0	0	0	0	0	0	1	0	9334	318	11	5	984	5	MAST4	5	66386058	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	22776620	66386058	114529202	192	9799											
ZNF366	167465	broad.mit.edu	37	5	71756853	71756853	+	Silent	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	71756853	G	T	71756853	2	4	157	1	0	0	0	0	0	0	0	1	17882	1335	47	4		4	ZNF366	5	71756853	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	5370795	71756853	109158407	193	9800											
COL4A3BP	10087	broad.mit.edu	37	5	74754945	74754945	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	74754945	C	T	74754945	3	4	157	1	0	0	0	0	1	0	0	0	3694	536	19	1	1641	1	COL4A3BP	5	74754945	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2998092	74754945	106160315	194	9801											
MCTP1	79772	broad.mit.edu	37	5	94253679	94253679	+	Splice_Site	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	94253679	C	T	94253679	5	4	157	1	0	0	0	0	0	0	1	0	9407	927	32	2	1791	2	MCTP1	5	94253679	Splice_Site	SNP	C	TCGA-B0-5098-01A-01D-1421-08	19498734	94253679	86661581	195	9802											
ELL2	22936	broad.mit.edu	37	5	95226808	95226808	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	95226808	T	C	95226808	5	2	157	1	0	0	0	0	0	0	1	0	5065	1594	55	3	174	3	ELL2	5	95226808	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	973129	95226808	85688452	196	9803											
ERAP2	64167	broad.mit.edu	37	5	96251400	96251400	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	96251400	T	C	96251400	3	2	157	1	0	0	0	0	1	0	0	0	5206	1821	63	3	2732	3	ERAP2	5	96251400	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1024592	96251400	84663860	197	9804											
LNPEP	4012	broad.mit.edu	37	5	96350727	96350727	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	96350727	C	A	96350727	2	1	157	1	0	0	0	0	0	0	0	1	8871	610	22	4		4	LNPEP	5	96350727	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	99327	96350727	84564533	198	9805											
APC	324	broad.mit.edu	37	5	112176344	112176345	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	112176345	-	A	112176344	7	5	157	1	0	1	1	0	0	0	0	0	763	1291	45	0	5111	0	APC	5	112176344	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	15825617	112176344	68738916	199	9806											
KCNN2	3781	broad.mit.edu	37	5	113822745	113822745	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	113822745	A	G	113822745	5	3	157	1	0	0	0	0	0	0	1	0	8086	202	7	3	1275	3	KCNN2	5	113822745	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1646401	113822745	67092515	200	9807											
FTMT	94033	broad.mit.edu	37	5	121187789	121187789	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	121187789	C	-	121187789	7	5	157	1	0	1	0	1	0	0	0	0	6092	739	26	0	133	0	FTMT	5	121187789	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	7365044	121187789	59727471	201	9808											
FNIP1	96459	broad.mit.edu	37	5	131066705	131066706	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	131066706	TT	-	131066705	7	5	157	1	0	1	0	1	0	0	0	0	5982	1606	56	0	3318	0	FNIP1	5	131066705	Frame_Shift_Del	DEL	TT	TCGA-B0-5098-01A-01D-1421-08	9878916	131066705	49848555	202	9809											
SLC22A4	6583	broad.mit.edu	37	5	131663087	131663087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	131663087	T	-	131663087	7	5	157	1	0	1	0	1	0	0	0	0	14469	1490	52	0	960	0	SLC22A4	5	131663087	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	596382	131663087	49252173	203	9810											
FSTL4	23105	broad.mit.edu	37	5	132534947	132534947	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	132534947	C	-	132534947	7	5	157	1	0	1	0	1	0	0	0	0	6086	507	18	0	163	0	FSTL4	5	132534947	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	871860	132534947	48380313	204	9811											
SIL1	64374	broad.mit.edu	37	5	138456826	138456826	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	138456826	T	C	138456826	3	2	157	1	0	0	0	0	1	0	0	0	14334	1696	59	3	1275	3	SIL1	5	138456826	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5921879	138456826	42458434	205	9812											
ANKHD1	54882	broad.mit.edu	37	5	139889312	139889312	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	139889312	C	-	139889312	7	5	157	1	0	1	0	1	0	0	0	0	628	855	30	0	4044	0	ANKHD1	5	139889312	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	1432486	139889312	41025948	206	9813											
PCDHA2	56146	broad.mit.edu	37	5	140176930	140176930	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	140176930	T	C	140176930	3	2	157	1	0	0	0	0	1	0	0	0	11531	1638	57	3	2383	3	PCDHA2	5	140176930	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	287618	140176930	40738330	207	9814											
PCDHA11	56138	broad.mit.edu	37	5	140250117	140250117	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	140250117	T	C	140250117	3	2	157	1	0	0	0	0	1	0	0	0	11528	1667	58	3	1431	3	PCDHA11	5	140250117	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	73187	140250117	40665143	208	9815											
PCDHB7	56129	broad.mit.edu	37	5	140554720	140554720	+	Silent	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	140554720	T	A	140554720	2	1	157	1	0	0	0	0	0	0	0	1	11554	1742	61	5		5	PCDHB7	5	140554720	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	304603	140554720	40360540	209	9816	109	3									
PCDHB7	56129	broad.mit.edu	37	5	140554722	140554722	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	140554722	T	A	140554722	3	1	157	1	0	0	0	0	1	0	0	0	11554	1435	50	5	2308	5	PCDHB7	5	140554722	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2	140554722	40360538	210	9817	109	3									
PCDHB7	56129	broad.mit.edu	37	5	140554727	140554727	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	140554727	A	C	140554727	3	2	157	1	0	0	0	0	1	0	0	0	11554	130	5	5	2313	5	PCDHB7	5	140554727	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	5	140554727	40360533	211	9818	109	3									
PCDHGA3	56112	broad.mit.edu	37	5	140725001	140725001	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	140725001	A	T	140725001	3	4	157	1	0	0	0	0	1	0	0	0	11562	301	11	5	1403	5	PCDHGA3	5	140725001	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	170274	140725001	40190259	212	9819											
PCDHGA7	56108	broad.mit.edu	37	5	140762925	140762925	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	140762925	G	A	140762925	2	1	157	1	0	0	0	0	0	0	0	1	11566	1132	40	1		1	PCDHGA7	5	140762925	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	37924	140762925	40152335	213	9820											
RNF14	9604	broad.mit.edu	37	5	141357883	141357883	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	141357883	A	G	141357883	3	3	157	1	0	0	0	0	1	0	0	0	13456	131	5	3	332	3	RNF14	5	141357883	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	594958	141357883	39557377	214	9821											
ANXA6	309	broad.mit.edu	37	5	150519732	150519732	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	150519732	T	C	150519732	3	2	157	1	0	0	0	0	1	0	0	0	722	1696	59	3	2026	3	ANXA6	5	150519732	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	9161849	150519732	30395528	215	9822											
G3BP1	10146	broad.mit.edu	37	5	151183518	151183518	+	Nonsense_Mutation	SNP	C	C	T	rs140218237		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	151183518	C	T	151183518	4	4	157	1	0	0	0	0	0	1	0	0	6148	644	23	1	1309	1	G3BP1	5	151183518	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	663786	151183518	29731742	216	9823											
GLRA1	2741	broad.mit.edu	37	5	151239530	151239530	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	151239530	C	A	151239530	3	1	157	1	0	0	0	0	1	0	0	0	6461	884	31	4	1105	4	GLRA1	5	151239530	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	56012	151239530	29675730	217	9824											
GEMIN5	25929	broad.mit.edu	37	5	154268882	154268882	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	154268882	T	C	154268882	5	2	157	1	0	0	0	0	0	0	1	0	6338	1623	56	3	176	3	GEMIN5	5	154268882	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	3029352	154268882	26646378	218	9825											
CPEB4	80315	broad.mit.edu	37	5	173370038	173370038	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	173370038	A	G	173370038	3	3	157	1	0	0	0	0	1	0	0	0	3805	449	16	3	1282	3	CPEB4	5	173370038	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	19101156	173370038	7545222	219	9826											
GRK6	2870	broad.mit.edu	37	5	176868029	176868029	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	176868029	T	C	176868029	3	2	157	1	0	0	0	0	1	0	0	0	6800	1580	55	3	1710	3	GRK6	5	176868029	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	3497991	176868029	4047231	220	9827											
RMND5B	64777	broad.mit.edu	37	5	177575020	177575020	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	177575020	G	A	177575020	3	1	157	1	0	0	0	0	1	0	0	0	13411	1087	38	1	1203	1	RMND5B	5	177575020	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	706991	177575020	3340240	221	9828											
CLK4	57396	broad.mit.edu	37	5	178044364	178044364	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	178044364	T	C	178044364	2	2	157	1	0	0	0	0	0	0	0	1	3541	1538	54	3		3	CLK4	5	178044364	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	469344	178044364	2870896	222	9829											
ZNF354A	6940	broad.mit.edu	37	5	178139363	178139363	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	178139363	T	A	178139363	3	1	157	1	0	0	0	0	1	0	0	0	17876	1754	61	5	305	5	ZNF354A	5	178139363	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	94999	178139363	2775897	223	9830											
MYLK4	340156	broad.mit.edu	37	6	2689172	2689172	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	2689172	G	A	2689172	3	1	157	1	0	0	0	0	1	0	0	0	10066	1116	39	1	948	1	MYLK4	6	2689172	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08		2689172	168425895	224	9831											
RREB1	6239	broad.mit.edu	37	6	7230314	7230314	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	7230314	A	G	7230314	3	3	157	1	0	0	0	0	1	0	0	0	13692	159	6	3	2008	3	RREB1	6	7230314	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	4541142	7230314	163884753	225	9832											
CAGE1	285782	broad.mit.edu	37	6	7334269	7334269	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	7334269	T	C	7334269	2	2	157	1	0	0	0	0	0	0	0	1	2574	1606	56	3		3	CAGE1	6	7334269	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	103955	7334269	163780798	226	9833											
DSP	1832	broad.mit.edu	37	6	7583192	7583192	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	7583192	C	A	7583192	2	1	157	1	0	0	0	0	0	0	0	1	4783	874	31	4		4	DSP	6	7583192	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	248923	7583192	163531875	227	9834											
ATXN1	6310	broad.mit.edu	37	6	16328183	16328183	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	16328183	T	C	16328183	3	2	157	1	0	0	0	0	1	0	0	0	1209	1638	57	3	2096	3	ATXN1	6	16328183	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	8744991	16328183	154786884	228	9835											
MBOAT1	154141	broad.mit.edu	37	6	20151474	20151475	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	20151475	-	A	20151474	7	5	157	1	0	1	1	0	0	0	0	0	9363	478	17	0	1266	0	MBOAT1	6	20151474	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	3823291	20151474	150963593	229	9836											
CDKAL1	54901	broad.mit.edu	37	6	21231246	21231246	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	21231246	T	-	21231246	7	5	157	1	0	1	0	1	0	0	0	0	3154	1596	56	0	1770	0	CDKAL1	6	21231246	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	1079772	21231246	149883821	230	9837											
KIAA0319	9856	broad.mit.edu	37	6	24559327	24559327	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	24559327	G	A	24559327	3	1	157	1	0	0	0	0	1	0	0	0	8175	971	34	2	590	2	KIAA0319	6	24559327	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3328081	24559327	146555740	231	9838											
HIST1H2AC	8334	broad.mit.edu	37	6	26124633	26124633	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	26124633	A	G	26124633	3	3	157	1	0	0	0	0	1	0	0	0	7137	391	14	3	175	3	HIST1H2AC	6	26124633	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1565306	26124633	144990434	232	9839											
HIST1H2BJ	8970	broad.mit.edu	37	6	27100491	27100491	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	27100491	C	T	27100491	2	4	157	1	0	0	0	0	0	0	0	1	7156	680	24	2		2	HIST1H2BJ	6	27100491	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	975858	27100491	144014576	233	9840											
PPP1R10	5514	broad.mit.edu	37	6	30570264	30570266	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	30570266	GGA	-	30570264	7	5	157	1	0	1	0	1	0	0	0	0	12362	1348	47	0	668	0	PPP1R10	6	30570264	In_Frame_Del	DEL	GGA	TCGA-B0-5098-01A-01D-1421-08	3469773	30570264	140544803	234	9841											
TUBB	203068	broad.mit.edu	37	6	30691481	30691481	+	Silent	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	30691481	T	A	30691481	2	1	157	1	0	0	0	0	0	0	0	1	16764	1538	54	5		5	TUBB	6	30691481	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	121217	30691481	140423586	235	9842											
VARS	7407	broad.mit.edu	37	6	31760034	31760034	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	31760034	G	A	31760034	2	1	157	1	0	0	0	0	0	0	0	1	17135	1277	45	2		2	VARS	6	31760034	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1068553	31760034	139355033	236	9843											
ZBTB12	221527	broad.mit.edu	37	6	31868726	31868726	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	31868726	G	A	31868726	2	1	157	1	0	0	0	0	0	0	0	1	17537	1195	42	2		2	ZBTB12	6	31868726	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	108692	31868726	139246341	237	9844											
TNXB	7148	broad.mit.edu	37	6	32015543	32015543	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	32015543	C	T	32015543	3	4	157	1	0	0	0	0	1	0	0	0	16358	884	31	1	4487	1	TNXB	6	32015543	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	146817	32015543	139099524	238	9845											
TNXB	7148	broad.mit.edu	37	6	32017812	32017812	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	32017812	G	A	32017812	2	1	157	1	0	0	0	0	0	0	0	1	16358	1190	42	2		2	TNXB	6	32017812	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2269	32017812	139097255	239	9846											
LEMD2	221496	broad.mit.edu	37	6	33744975	33744975	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	33744975	G	A	33744975	3	1	157	1	0	0	0	0	1	0	0	0	8727	1057	37	1	325	1	LEMD2	6	33744975	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1727163	33744975	137370092	240	9847											
GLO1	2739	broad.mit.edu	37	6	38652183	38652183	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	38652183	G	A	38652183	3	1	157	1	0	0	0	0	1	0	0	0	6456	1087	38	1	295	1	GLO1	6	38652183	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4907208	38652183	132462884	241	9848											
TREML4	285852	broad.mit.edu	37	6	41197850	41197850	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	41197850	T	C	41197850	3	2	157	1	0	0	0	0	1	0	0	0	16486	1551	54	3	510	3	TREML4	6	41197850	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2545667	41197850	129917217	242	9849											
ZNF318	24149	broad.mit.edu	37	6	43306339	43306339	+	Silent	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	43306339	G	C	43306339	2	2	157	1	0	0	0	0	0	0	0	1	17848	1335	47	4		4	ZNF318	6	43306339	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2108489	43306339	127808728	243	9850											
TDRD6	221400	broad.mit.edu	37	6	46656745	46656745	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	46656745	G	A	46656745	3	1	157	1	0	0	0	0	1	0	0	0	15746	1000	35	2	882	2	TDRD6	6	46656745	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3350406	46656745	124458322	244	9851											
TFAP2D	83741	broad.mit.edu	37	6	50740509	50740509	+	Nonsense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	50740509	G	T	50740509	4	4	157	1	0	0	0	0	0	1	0	0	15802	1175	41	4	1321	4	TFAP2D	6	50740509	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4083764	50740509	120374558	245	9852											
KLHL31	401265	broad.mit.edu	37	6	53519514	53519514	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	53519514	T	-	53519514	7	5	157	1	0	1	0	1	0	0	0	0	8392	1493	52	0	1355	0	KLHL31	6	53519514	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	2779005	53519514	117595553	246	9853											
PHF3	23469	broad.mit.edu	37	6	64395266	64395267	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	64395267	-	A	64395266	7	5	157	1	0	1	1	0	0	0	0	0	11843	942	33	0	1653	0	PHF3	6	64395266	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	10875752	64395266	106719801	247	9854											
BAI3	577	broad.mit.edu	37	6	69949021	69949021	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	69949021	T	A	69949021	3	1	157	1	0	0	0	0	1	0	0	0	1300	1406	49	5	2787	5	BAI3	6	69949021	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5553755	69949021	101166046	248	9855											
FAM135A	57579	broad.mit.edu	37	6	71162230	71162230	+	Nonsense_Mutation	SNP	C	C	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	71162230	C	G	71162230	4	3	157	1	0	0	0	0	0	1	0	0	5452	838	29	4	119	4	FAM135A	6	71162230	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1213209	71162230	99952837	249	9856											
MYO6	4646	broad.mit.edu	37	6	76589611	76589611	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	76589611	T	C	76589611	3	2	157	1	0	0	0	0	1	0	0	0	10088	1638	57	3	2230	3	MYO6	6	76589611	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5427381	76589611	94525456	250	9857											
SNAP91	9892	broad.mit.edu	37	6	84302944	84302944	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	84302944	C	A	84302944	2	1	157	1	0	0	0	0	0	0	0	1	14846	755	27	4		4	SNAP91	6	84302944	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	7713333	84302944	86812123	251	9858											
FOXO3	2309	broad.mit.edu	37	6	108985226	108985226	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	108985226	C	T	108985226	3	4	157	1	0	0	0	0	1	0	0	0	6031	652	23	1	1196	1	FOXO3	6	108985226	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	24682282	108985226	62129841	252	9859											
REV3L	5980	broad.mit.edu	37	6	111688861	111688861	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	111688861	C	A	111688861	3	1	157	1	0	0	0	0	1	0	0	0	13253	913	32	4	3338	4	REV3L	6	111688861	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2703635	111688861	59426206	253	9860											
REV3L	5980	broad.mit.edu	37	6	111701250	111701250	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	111701250	C	T	111701250	3	4	157	1	0	0	0	0	1	0	0	0	13253	594	21	2	8091	2	REV3L	6	111701250	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	12389	111701250	59413817	254	9861											
FAM184A	79632	broad.mit.edu	37	6	119301393	119301393	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	119301393	C	T	119301393	2	4	157	1	0	0	0	0	0	0	0	1	5515	680	24	2		2	FAM184A	6	119301393	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	7600143	119301393	51813674	255	9862											
RNF217	154214	broad.mit.edu	37	6	125397823	125397823	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	125397823	A	G	125397823	2	3	157	1	0	0	0	0	0	0	0	1	13494	69	3	3		3	RNF217	6	125397823	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	6096430	125397823	45717244	256	9863											
ARHGAP18	93663	broad.mit.edu	37	6	129937433	129937434	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	129937434	-	A	129937433	7	5	157	1	0	1	1	0	0	0	0	0	868	710	25	0	1059	0	ARHGAP18	6	129937433	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	4539610	129937433	41177634	257	9864											
TAAR5	9038	broad.mit.edu	37	6	132910127	132910127	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	132910127	A	G	132910127	2	3	157	1	0	0	0	0	0	0	0	1	15503	358	13	3		3	TAAR5	6	132910127	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2972694	132910127	38204940	258	9865											
VNN2	8875	broad.mit.edu	37	6	133073887	133073887	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	133073887	T	C	133073887	5	2	157	1	0	0	0	0	0	0	1	0	17195	1652	57	3	1039	3	VNN2	6	133073887	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	163760	133073887	38041180	259	9866											
PEX7	5191	broad.mit.edu	37	6	137191121	137191121	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	137191121	T	C	137191121	3	2	157	1	0	0	0	0	1	0	0	0	11758	1522	53	3	753	3	PEX7	6	137191121	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	4117234	137191121	33923946	260	9867											
KIAA1244	57221	broad.mit.edu	37	6	138584306	138584306	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	138584306	C	T	138584306	2	4	157	1	0	0	0	0	0	0	0	1	8224	871	31	1		1	KIAA1244	6	138584306	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1393185	138584306	32530761	261	9868											
STX11	8676	broad.mit.edu	37	6	144508482	144508482	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	144508482	G	A	144508482	3	1	157	1	0	0	0	0	1	0	0	0	15349	1058	37	1	720	1	STX11	6	144508482	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	5924176	144508482	26606585	262	9869											
IYD	389434	broad.mit.edu	37	6	150690236	150690236	+	Silent	SNP	C	C	A	rs138283020	by1000genomes	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	150690236	C	A	150690236	2	1	157	1	0	0	0	0	0	0	0	1	7939	639	23	4		4	IYD	6	150690236	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	6181754	150690236	20424831	263	9870											
ESR1	2099	broad.mit.edu	37	6	152265601	152265601	+	Silent	SNP	A	A	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	152265601	A	C	152265601	2	2	157	1	0	0	0	0	0	0	0	1	5258	179	7	5		5	ESR1	6	152265601	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1575365	152265601	18849466	264	9871											
SYNE1	23345	broad.mit.edu	37	6	152542150	152542150	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	152542150	G	A	152542150	4	1	157	1	0	0	0	0	0	1	0	0	15457	1328	46	2	4890	2	SYNE1	6	152542150	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	276549	152542150	18572917	265	9872											
ARID1B	57492	broad.mit.edu	37	6	157521896	157521896	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	157521896	G	A	157521896	3	1	157	1	0	0	0	0	1	0	0	0	914	1058	37	1	4238	1	ARID1B	6	157521896	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4979746	157521896	13593171	266	9873											
SERAC1	84947	broad.mit.edu	37	6	158532468	158532468	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	158532468	T	-	158532468	7	5	157	1	0	1	0	1	0	0	0	0	14087	1609	56	0	73	0	SERAC1	6	158532468	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	1010572	158532468	12582599	267	9874											
TULP4	56995	broad.mit.edu	37	6	158923024	158923024	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	158923024	C	-	158923024	7	5	157	1	0	1	0	1	0	0	0	0	16788	855	30	0	2379	0	TULP4	6	158923024	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	390556	158923024	12192043	268	9875											
WTAP	9589	broad.mit.edu	37	6	160164822	160164822	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	160164822	A	G	160164822	3	3	157	1	0	0	0	0	1	0	0	0	17421	391	14	3	285	3	WTAP	6	160164822	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1241798	160164822	10950245	269	9876											
ZNF12	7559	broad.mit.edu	37	7	6731351	6731351	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	6731351	G	C	6731351	3	2	157	1	0	0	0	0	1	0	0	0	17730	1029	36	4	875	4	ZNF12	7	6731351	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08		6731351	152407312	270	9877											
THSD7A	221981	broad.mit.edu	37	7	11676288	11676291	+	Frame_Shift_Del	DEL	TCTT	TCTT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	11676291	TCTT	-	11676288	7	5	157	1	0	1	0	1	0	0	0	0	15891	1667	58	0	4586	0	THSD7A	7	11676288	Frame_Shift_Del	DEL	TCTT	TCGA-B0-5098-01A-01D-1421-08	4944937	11676288	147462375	271	9878											
ETV1	2115	broad.mit.edu	37	7	13971309	13971309	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	13971309	C	A	13971309	3	1	157	1	0	0	0	0	1	0	0	0	5279	855	30	4	837	4	ETV1	7	13971309	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2295021	13971309	145167354	272	9879											
PRPS1L1	221823	broad.mit.edu	37	7	18066798	18066798	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	18066798	T	C	18066798	3	2	157	1	0	0	0	0	1	0	0	0	12589	1667	58	3	352	3	PRPS1L1	7	18066798	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	4095489	18066798	141071865	273	9880											
HDAC9	9734	broad.mit.edu	37	7	18705937	18705937	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	18705937	G	A	18705937	2	1	157	1	0	0	0	0	0	0	0	1	7021	1074	38	1		1	HDAC9	7	18705937	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	639139	18705937	140432726	274	9881											
KLHL7	55975	broad.mit.edu	37	7	23191797	23191797	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	23191797	A	G	23191797	3	3	157	1	0	0	0	0	1	0	0	0	8401	130	5	3	994	3	KLHL7	7	23191797	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	4485860	23191797	135946866	275	9882											
HOXA9	3205	broad.mit.edu	37	7	27203284	27203284	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	27203284	A	G	27203284	3	3	157	1	0	0	0	0	1	0	0	0	7305	188	7	3	65	3	HOXA9	7	27203284	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	4011487	27203284	131935379	276	9883											
CRHR2	1395	broad.mit.edu	37	7	30702345	30702345	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	30702345	C	T	30702345	3	4	157	1	0	0	0	0	1	0	0	0	3874	768	27	1	601	1	CRHR2	7	30702345	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3499061	30702345	128436318	277	9884											
MRPL32	64983	broad.mit.edu	37	7	42977150	42977150	+	Missense_Mutation	SNP	G	G	A	rs146917176		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	42977150	G	A	42977150	3	1	157	1	0	0	0	0	1	0	0	0	9802	1058	37	1	552	1	MRPL32	7	42977150	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	12274805	42977150	116161513	278	9885											
POLM	27434	broad.mit.edu	37	7	44113413	44113413	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	44113413	G	T	44113413	3	4	157	1	0	0	0	0	1	0	0	0	12213	1000	35	4	213	4	POLM	7	44113413	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1136263	44113413	115025250	279	9886											
AEBP1	165	broad.mit.edu	37	7	44149825	44149825	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	44149825	A	G	44149825	3	3	157	1	0	0	0	0	1	0	0	0	349	275	10	3	1322	3	AEBP1	7	44149825	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	36412	44149825	114988838	280	9887											
AEBP1	165	broad.mit.edu	37	7	44153558	44153558	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	44153558	A	G	44153558	3	3	157	1	0	0	0	0	1	0	0	0	349	159	6	3	3257	3	AEBP1	7	44153558	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3733	44153558	114985105	281	9888											
CLDN4	1364	broad.mit.edu	37	7	73246063	73246063	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	73246063	G	-	73246063	7	5	157	1	0	1	0	1	0	0	0	0	3489	1116	39	0	534	0	CLDN4	7	73246063	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	29092505	73246063	85892600	282	9889											
GRM3	2913	broad.mit.edu	37	7	86468878	86468878	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	86468878	T	C	86468878	3	2	157	1	0	0	0	0	1	0	0	0	6805	1435	50	3	2058	3	GRM3	7	86468878	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	13222815	86468878	72669785	283	9890											
KIAA1324L	222223	broad.mit.edu	37	7	86542277	86542277	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	86542277	G	T	86542277	3	4	157	1	0	0	0	0	1	0	0	0	8231	1203	42	4	1150	4	KIAA1324L	7	86542277	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	73399	86542277	72596386	284	9891											
PPP1R9A	55607	broad.mit.edu	37	7	94539704	94539704	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	94539704	T	C	94539704	2	2	157	1	0	0	0	0	0	0	0	1	12388	1490	52	3		3	PPP1R9A	7	94539704	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	7997427	94539704	64598959	285	9892											
CNPY4	245812	broad.mit.edu	37	7	99717401	99717402	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	99717402	-	T	99717401	7	5	157	1	0	1	1	0	0	0	0	0	3632	681	24	0	36	0	CNPY4	7	99717401	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	5177697	99717401	59421262	286	9893											
SRRT	51593	broad.mit.edu	37	7	100482088	100482090	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	100482090	AAG	-	100482088	7	5	157	1	0	1	0	1	0	0	0	0	15184	14	1	0	879	0	SRRT	7	100482088	In_Frame_Del	DEL	AAG	TCGA-B0-5098-01A-01D-1421-08	764687	100482088	58656575	287	9894											
MUC17	140453	broad.mit.edu	37	7	100679747	100679747	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	100679747	A	G	100679747	3	3	157	1	0	0	0	0	1	0	0	0	9981	43	2	3	5060	3	MUC17	7	100679747	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	197659	100679747	58458916	288	9895											
RELN	5649	broad.mit.edu	37	7	103126801	103126801	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	103126801	C	T	103126801	3	4	157	1	0	0	0	0	1	0	0	0	13233	768	27	1	576	1	RELN	7	103126801	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2447054	103126801	56011862	289	9896											
NAMPT	10135	broad.mit.edu	37	7	105904030	105904030	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	105904030	T	C	105904030	2	2	157	1	0	0	0	0	0	0	0	1	10156	1606	56	3		3	NAMPT	7	105904030	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2777229	105904030	53234633	290	9897											
LAMB1	3912	broad.mit.edu	37	7	107576084	107576084	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	107576084	T	C	107576084	3	2	157	1	0	0	0	0	1	0	0	0	8617	1638	57	3	1428	3	LAMB1	7	107576084	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1672054	107576084	51562579	291	9898											
MET	4233	broad.mit.edu	37	7	116371797	116371797	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	116371797	C	T	116371797	3	4	157	1	0	0	0	0	1	0	0	0	9492	768	27	1	1282	1	MET	7	116371797	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	8795713	116371797	42766866	292	9899											
CPA1	1357	broad.mit.edu	37	7	130024430	130024430	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	130024430	C	T	130024430	2	4	157	1	0	0	0	0	0	0	0	1	3791	755	27	1		1	CPA1	7	130024430	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	13652633	130024430	29114233	293	9900											
EPHB6	2051	broad.mit.edu	37	7	142561951	142561951	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	142561951	C	T	142561951	2	4	157	1	0	0	0	0	0	0	0	1	5180	576	20	2		2	EPHB6	7	142561951	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	12537521	142561951	16576712	294	9901											
OR2A7	401427	broad.mit.edu	37	7	143956190	143956190	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	143956190	A	-	143956190	7	5	157	1	0	1	0	1	0	0	0	0	10989	130	5	0	403	0	OR2A7	7	143956190	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	1394239	143956190	15182473	295	9902											
ZNF777	27153	broad.mit.edu	37	7	149129497	149129497	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	149129497	C	T	149129497	2	4	157	1	0	0	0	0	0	0	0	1	18162	564	20	2		2	ZNF777	7	149129497	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	5173307	149129497	10009166	296	9903											
SSPO	23145	broad.mit.edu	37	7	149482799	149482799	+	RNA	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	149482799	T	C	149482799	1	2	157	0	1	0	0	0	0	0	0	0	15201	1580	55	3		3	SSPO	7	149482799	RNA	SNP	T	TCGA-B0-5098-01A-01D-1421-08	353302	149482799	9655864	297	9904											
ZNF862	643641	broad.mit.edu	37	7	149545507	149545507	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	149545507	G	C	149545507	3	2	157	1	0	0	0	0	1	0	0	0	18207	943	33	4	939	4	ZNF862	7	149545507	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	62708	149545507	9593156	298	9905											
ASB10	136371	broad.mit.edu	37	7	150883716	150883716	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	150883716	A	G	150883716	3	3	157	1	0	0	0	0	1	0	0	0	1014	188	7	3	1072	3	ASB10	7	150883716	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1338209	150883716	8254947	299	9906											
HTR5A	3361	broad.mit.edu	37	7	154863209	154863209	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	154863209	C	T	154863209	2	4	157	1	0	0	0	0	0	0	0	1	7457	547	19	1		1	HTR5A	7	154863209	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3979493	154863209	4275454	300	9907											
MYOM2	9172	broad.mit.edu	37	8	2005806	2005806	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	2005806	C	A	2005806	2	1	157	1	0	0	0	0	0	0	0	1	10099	845	30	4		4	MYOM2	8	2005806	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08		2005806	144358216	301	9908											
MYOM2	9172	broad.mit.edu	37	8	2077161	2077161	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	2077161	A	G	2077161	3	3	157	1	0	0	0	0	1	0	0	0	10099	381	14	3	3863	3	MYOM2	8	2077161	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	71355	2077161	144286861	302	9909											
CSMD1	64478	broad.mit.edu	37	8	3855604	3855604	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	3855604	G	A	3855604	2	1	157	1	0	0	0	0	0	0	0	1	3946	1074	38	1		1	CSMD1	8	3855604	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1778443	3855604	142508418	303	9910											
LONRF1	91694	broad.mit.edu	37	8	12592895	12592900	+	In_Frame_Del	DEL	GGCTCA	GGCTCA	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	12592900	GGCTCA	-	12592895	7	5	157	1	0	1	0	1	0	0	0	0	8901	1348	47	0	879	0	LONRF1	8	12592895	In_Frame_Del	DEL	GGCTCA	TCGA-B0-5098-01A-01D-1421-08	8737291	12592895	133771127	304	9911											
DLC1	10395	broad.mit.edu	37	8	13356895	13356895	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	13356895	G	A	13356895	3	1	157	1	0	0	0	0	1	0	0	0	4552	971	34	2	4053	2	DLC1	8	13356895	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	764000	13356895	133007127	305	9912											
CSGALNACT1	55790	broad.mit.edu	37	8	19363023	19363023	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	19363023	A	G	19363023	3	3	157	1	0	0	0	0	1	0	0	0	3940	188	7	3	1303	3	CSGALNACT1	8	19363023	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	6006128	19363023	127000999	306	9913											
PHYHIP	9796	broad.mit.edu	37	8	22078925	22078925	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	22078925	T	C	22078925	3	2	157	1	0	0	0	0	1	0	0	0	11873	1638	57	3	62	3	PHYHIP	8	22078925	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2715902	22078925	124285097	307	9914											
RHOBTB2	23221	broad.mit.edu	37	8	22865538	22865538	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	22865538	A	G	22865538	3	3	157	1	0	0	0	0	1	0	0	0	13347	188	7	3	1637	3	RHOBTB2	8	22865538	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	786613	22865538	123498484	308	9915											
KCTD9	54793	broad.mit.edu	37	8	25290134	25290134	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	25290134	C	A	25290134	2	1	157	1	0	0	0	0	0	0	0	1	8123	581	21	4		4	KCTD9	8	25290134	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2424596	25290134	121073888	309	9916											
KIF13B	23303	broad.mit.edu	37	8	28967545	28967545	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	28967545	C	T	28967545	3	4	157	1	0	0	0	0	1	0	0	0	8282	739	26	2	1539	2	KIF13B	8	28967545	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3677411	28967545	117396477	310	9917											
TEX15	56154	broad.mit.edu	37	8	30701622	30701622	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	30701622	T	C	30701622	3	2	157	1	0	0	0	0	1	0	0	0	15791	1763	61	3	3473	3	TEX15	8	30701622	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1734077	30701622	115662400	311	9918											
TM2D2	83877	broad.mit.edu	37	8	38848862	38848862	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	38848862	T	C	38848862	3	2	157	1	0	0	0	0	1	0	0	0	15976	1696	59	3	14	3	TM2D2	8	38848862	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	8147240	38848862	107515160	312	9919											
PLAT	5327	broad.mit.edu	37	8	42040264	42040264	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	42040264	A	G	42040264	3	3	157	1	0	0	0	0	1	0	0	0	12028	188	7	3	940	3	PLAT	8	42040264	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3191402	42040264	104323758	313	9920											
ST18	9705	broad.mit.edu	37	8	53030917	53030917	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	53030917	A	G	53030917	3	3	157	1	0	0	0	0	1	0	0	0	15224	217	8	3	315	3	ST18	8	53030917	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	10990653	53030917	93333105	314	9921											
XKR4	114786	broad.mit.edu	37	8	56436132	56436132	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	56436132	C	T	56436132	2	4	157	1	0	0	0	0	0	0	0	1	17445	883	31	1		1	XKR4	8	56436132	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3405215	56436132	89927890	315	9922											
TMEM68	137695	broad.mit.edu	37	8	56675151	56675151	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	56675151	C	T	56675151	3	4	157	1	0	0	0	0	1	0	0	0	16209	725	25	2		2	TMEM68	8	56675151	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	239019	56675151	89688871	316	9923											
ZFHX4	79776	broad.mit.edu	37	8	77617102	77617102	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	77617102	T	C	77617102	3	2	157	1	0	0	0	0	1	0	0	0	17647	1696	59	3	781	3	ZFHX4	8	77617102	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	20941951	77617102	68746920	317	9924											
ZFHX4	79776	broad.mit.edu	37	8	77775451	77775451	+	Silent	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	77775451	T	A	77775451	2	1	157	1	0	0	0	0	0	0	0	1	17647	1538	54	5		5	ZFHX4	8	77775451	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	158349	77775451	68588571	318	9925											
PAG1	55824	broad.mit.edu	37	8	81897572	81897572	+	Silent	SNP	G	G	A	rs113484085		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	81897572	G	A	81897572	2	1	157	1	0	0	0	0	0	0	0	1	11395	1140	40	1		1	PAG1	8	81897572	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4122121	81897572	64466450	319	9926											
SLC7A13	157724	broad.mit.edu	37	8	87242135	87242135	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	87242135	A	-	87242135	7	5	157	1	0	1	0	1	0	0	0	0	14708	243	9	0	1056	0	SLC7A13	8	87242135	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	5344563	87242135	59121887	320	9927											
RIPK2	8767	broad.mit.edu	37	8	90784903	90784903	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	90784903	A	G	90784903	3	3	157	1	0	0	0	0	1	0	0	0	13394	130	5	3	722	3	RIPK2	8	90784903	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3542768	90784903	55579119	321	9928											
SLC26A7	115111	broad.mit.edu	37	8	92378916	92378916	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	92378916	T	C	92378916	3	2	157	1	0	0	0	0	1	0	0	0	14535	1580	55	3	1647	3	SLC26A7	8	92378916	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1594013	92378916	53985106	322	9929											
RBM12B	389677	broad.mit.edu	37	8	94745931	94745931	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	94745931	A	G	94745931	3	3	157	1	0	0	0	0	1	0	0	0	13127	217	8	3	301	3	RBM12B	8	94745931	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2367015	94745931	51618091	323	9930											
NIPAL2	79815	broad.mit.edu	37	8	99217418	99217418	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	99217418	T	C	99217418	3	2	157	1	0	0	0	0	1	0	0	0	10432	1435	50	3	418	3	NIPAL2	8	99217418	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	4471487	99217418	47146604	324	9931											
RNF19A	25897	broad.mit.edu	37	8	101299911	101299911	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	101299911	C	T	101299911	2	4	157	1	0	0	0	0	0	0	0	1	13483	854	30	2		2	RNF19A	8	101299911	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2082493	101299911	45064111	325	9932											
UBR5	51366	broad.mit.edu	37	8	103372381	103372381	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	103372381	A	G	103372381	3	3	157	1	0	0	0	0	1	0	0	0	16917	275	10	3	8315	3	UBR5	8	103372381	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2072470	103372381	42991641	326	9933											
ZFPM2	23414	broad.mit.edu	37	8	106646501	106646501	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	106646501	C	T	106646501	2	4	157	1	0	0	0	0	0	0	0	1	17670	796	28	2		2	ZFPM2	8	106646501	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3274120	106646501	39717521	327	9934											
EXT1	2131	broad.mit.edu	37	8	119122871	119122871	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	119122871	C	A	119122871	4	1	157	1	0	0	0	0	0	1	0	0	5325	893	31	4	1869	4	EXT1	8	119122871	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	12476370	119122871	27241151	328	9935											
COL14A1	7373	broad.mit.edu	37	8	121216054	121216054	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	121216054	G	C	121216054	3	2	157	1	0	0	0	0	1	0	0	0	3673	933	33	4	1014	4	COL14A1	8	121216054	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2093183	121216054	25147968	329	9936											
TRIB1	10221	broad.mit.edu	37	8	126445606	126445606	+	Translation_Start_Site	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	126445606	G	A	126445606	1	1	157	1	0	0	0	0	0	0	0	0	16494	962	34	2		2	TRIB1	8	126445606	Translation_Start_Site	SNP	G	TCGA-B0-5098-01A-01D-1421-08	5229552	126445606	19918416	330	9937											
COL22A1	169044	broad.mit.edu	37	8	139729066	139729066	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	139729066	A	G	139729066	5	3	157	1	0	0	0	0	0	0	1	0	3683	289	10	3	2630	3	COL22A1	8	139729066	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	13283460	139729066	6634956	331	9938											
EPPK1	83481	broad.mit.edu	37	8	144941154	144941154	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	144941154	G	A	144941154	3	1	157	1	0	0	0	0	1	0	0	0	5192	1144	40	1	998	1	EPPK1	8	144941154	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	5212088	144941154	1422868	332	9939											
PLEC	5339	broad.mit.edu	37	8	144992015	144992015	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	144992015	G	A	144992015	3	1	157	1	0	0	0	0	1	0	0	0	12059	1087	38	1	1673	1	PLEC	8	144992015	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	50861	144992015	1372007	333	9940											
ERMP1	79956	broad.mit.edu	37	9	5811273	5811273	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	5811273	C	T	5811273	3	4	157	1	0	0	0	0	1	0	0	0	5238	739	26	2	1585	2	ERMP1	9	5811273	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08		5811273	135402158	334	9941											
SH3GL2	6456	broad.mit.edu	37	9	17787382	17787382	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	17787382	A	G	17787382	2	3	157	1	0	0	0	0	0	0	0	1	14264	175	7	3		3	SH3GL2	9	17787382	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	11976109	17787382	123426049	335	9942											
IFNA7	3444	broad.mit.edu	37	9	21201942	21201942	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	21201942	G	T	21201942	3	4	157	1	0	0	0	0	1	0	0	0	7549	1299	45	4	350	4	IFNA7	9	21201942	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3414560	21201942	120011489	336	9943	110	2									
IFNA7	3444	broad.mit.edu	37	9	21201943	21201943	+	Silent	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	21201943	A	T	21201943	2	4	157	1	0	0	0	0	0	0	0	1	7549	291	11	5		5	IFNA7	9	21201943	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1	21201943	120011488	337	9944	110	2									
TEK	7010	broad.mit.edu	37	9	27183560	27183560	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	27183560	T	C	27183560	2	2	157	1	0	0	0	0	0	0	0	1	15763	1509	53	3		3	TEK	9	27183560	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5981617	27183560	114029871	338	9945											
BAG1	573	broad.mit.edu	37	9	33264251	33264251	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	33264251	G	A	33264251	3	1	157	1	0	0	0	0	1	0	0	0	1286	1319	46	2	643	2	BAG1	9	33264251	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	6080691	33264251	107949180	339	9946											
KIF24	347240	broad.mit.edu	37	9	34257489	34257489	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	34257489	C	T	34257489	3	4	157	1	0	0	0	0	1	0	0	0	8299	565	20	2	2002	2	KIF24	9	34257489	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	993238	34257489	106955942	340	9947											
PIGO	84720	broad.mit.edu	37	9	35090187	35090187	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	35090187	G	A	35090187	3	1	157	1	0	0	0	0	1	0	0	0	11901	1203	42	2	336	2	PIGO	9	35090187	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	832698	35090187	106123244	341	9948											
TLN1	7094	broad.mit.edu	37	9	35714321	35714321	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	35714321	T	G	35714321	3	3	157	1	0	0	0	0	1	0	0	0	15959	1580	55	5	4726	5	TLN1	9	35714321	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	624134	35714321	105499110	342	9949											
AGTPBP1	23287	broad.mit.edu	37	9	88207490	88207490	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	88207490	C	T	88207490	2	4	157	1	0	0	0	0	0	0	0	1	400	523	19	1		1	AGTPBP1	9	88207490	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	52493169	88207490	53005941	343	9950											
NAA35	60560	broad.mit.edu	37	9	88631578	88631578	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	88631578	A	-	88631578	7	5	157	1	0	1	0	1	0	0	0	0	10130	247	9	0	1759	0	NAA35	9	88631578	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	424088	88631578	52581853	344	9951											
WNK2	65268	broad.mit.edu	37	9	96051602	96051602	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	96051602	C	T	96051602	2	4	157	1	0	0	0	0	0	0	0	1	17390	639	23	1		1	WNK2	9	96051602	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	7420024	96051602	45161829	345	9952											
FAM120A	23196	broad.mit.edu	37	9	96278286	96278286	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	96278286	G	-	96278286	7	5	157	1	0	1	0	1	0	0	0	0	5419	1000	35	0	1179	0	FAM120A	9	96278286	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	226684	96278286	44935145	346	9953											
TMEM38B	55151	broad.mit.edu	37	9	108536277	108536277	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	108536277	C	A	108536277	2	1	157	1	0	0	0	0	0	0	0	1	16172	581	21	4		4	TMEM38B	9	108536277	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	12257991	108536277	32677154	347	9954											
ZNF462	58499	broad.mit.edu	37	9	109734321	109734321	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	109734321	C	T	109734321	4	4	157	1	0	0	0	0	0	1	0	0	17938	711	25	2	6489	2	ZNF462	9	109734321	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1198044	109734321	31479110	348	9955											
TNC	3371	broad.mit.edu	37	9	117848833	117848833	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	117848833	C	A	117848833	4	1	157	1	0	0	0	0	0	1	0	0	16282	835	29	4	5532	4	TNC	9	117848833	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	8114512	117848833	23364598	349	9956											
NR6A1	2649	broad.mit.edu	37	9	127298227	127298227	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	127298227	T	C	127298227	3	2	157	1	0	0	0	0	1	0	0	0	10644	1580	55	3	449	3	NR6A1	9	127298227	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	9449394	127298227	13915204	350	9957											
ENG	2022	broad.mit.edu	37	9	130579468	130579468	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	130579468	A	G	130579468	2	3	157	1	0	0	0	0	0	0	0	1	5119	175	7	3		3	ENG	9	130579468	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3281241	130579468	10633963	351	9958											
PKN3	29941	broad.mit.edu	37	9	131482247	131482247	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	131482247	C	-	131482247	7	5	157	1	0	1	0	1	0	0	0	0	11988	739	26	0	2405	0	PKN3	9	131482247	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	902779	131482247	9731184	352	9959											
GPR107	57720	broad.mit.edu	37	9	132897302	132897302	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	132897302	A	G	132897302	5	3	157	1	0	0	0	0	0	0	1	0	6630	202	7	3	1783	3	GPR107	9	132897302	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1415055	132897302	8316129	353	9960											
C9orf96	169436	broad.mit.edu	37	9	136255356	136255356	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	136255356	T	C	136255356	3	2	157	1	0	0	0	0	1	0	0	0	2510	1580	55	3	465	3	C9orf96	9	136255356	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	3358054	136255356	4958075	354	9961											
EXD3	54932	broad.mit.edu	37	9	140243598	140243598	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	140243598	G	A	140243598	2	1	157	1	0	0	0	0	0	0	0	1	5301	1190	42	2		2	EXD3	9	140243598	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3988242	140243598	969833	355	9962											
NOXA1	10811	broad.mit.edu	37	9	140327515	140327516	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	140327516	CT	-	140327515	7	5	157	1	0	1	0	1	0	0	0	0	10567	681	24	0	873	0	NOXA1	9	140327515	Frame_Shift_Del	DEL	CT	TCGA-B0-5098-01A-01D-1421-08	83917	140327515	885916	356	9963											
UCN3	114131	broad.mit.edu	37	10	5415994	5415994	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	5415994	G	T	5415994	3	4	157	1	0	0	0	0	1	0	0	0	16941	1000	35	4	313	4	UCN3	10	5415994	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08		5415994	130118753	357	9964											
ASB13	79754	broad.mit.edu	37	10	5690974	5690974	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	5690974	G	A	5690974	3	1	157	1	0	0	0	0	1	0	0	0	1017	1203	42	2	372	2	ASB13	10	5690974	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	274980	5690974	129843773	358	9965											
FBXO18	84893	broad.mit.edu	37	10	5950982	5950982	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	5950982	A	-	5950982	7	5	157	1	0	1	0	1	0	0	0	0	5738	246	9	0	1024	0	FBXO18	10	5950982	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	260008	5950982	129583765	359	9966											
ITIH2	3698	broad.mit.edu	37	10	7777015	7777015	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	7777015	C	T	7777015	2	4	157	1	0	0	0	0	0	0	0	1	7911	796	28	2		2	ITIH2	10	7777015	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1826033	7777015	127757732	360	9967											
ITIH2	3698	broad.mit.edu	37	10	7791150	7791150	+	Splice_Site	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	7791150	G	A	7791150	5	1	157	1	0	0	0	0	0	0	1	0	7911	1246	43	2	2776	2	ITIH2	10	7791150	Splice_Site	SNP	G	TCGA-B0-5098-01A-01D-1421-08	14135	7791150	127743597	361	9968											
OLAH	55301	broad.mit.edu	37	10	15113840	15113840	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	15113840	T	A	15113840	3	1	157	1	0	0	0	0	1	0	0	0	10858	1841	64	5	804	5	OLAH	10	15113840	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	7322690	15113840	120420907	362	9969											
CUBN	8029	broad.mit.edu	37	10	17164806	17164806	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	17164806	A	G	17164806	3	3	157	1	0	0	0	0	1	0	0	0	4053	217	8	3	10538	3	CUBN	10	17164806	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2050966	17164806	118369941	363	9970											
MRC1	4360	broad.mit.edu	37	10	18122710	18122710	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	18122710	G	A	18122710	4	1	157	1	0	0	0	0	0	1	0	0	9763	1212	42	2	5225	2	MRC1	10	18122710	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	957904	18122710	117412037	364	9971											
KIF5B	3799	broad.mit.edu	37	10	32307245	32307245	+	Splice_Site	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	32307245	T	A	32307245	5	1	157	1	0	0	0	0	0	0	1	0	8313	1623	56	5	469	5	KIF5B	10	32307245	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	14184535	32307245	103227502	365	9972											
ANKRD30A	91074	broad.mit.edu	37	10	37442500	37442500	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	37442500	A	G	37442500	5	3	157	1	0	0	0	0	0	0	1	0	658	318	11	3	1590	3	ANKRD30A	10	37442500	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	5135255	37442500	98092247	366	9973											
RASGEF1A	221002	broad.mit.edu	37	10	43696217	43696217	+	Silent	SNP	C	C	T	rs61758758	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	43696217	C	T	43696217	2	4	157	1	0	0	0	0	0	0	0	1	13082	680	24	2		2	RASGEF1A	10	43696217	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	6253717	43696217	91838530	367	9974											
ZNF32	7580	broad.mit.edu	37	10	44139700	44139700	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	44139700	T	C	44139700	3	2	157	1	0	0	0	0	1	0	0	0	17850	1696	59	3	205	3	ZNF32	10	44139700	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	443483	44139700	91395047	368	9975											
MARCH8	220972	broad.mit.edu	37	10	45953840	45953840	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	45953840	A	G	45953840	2	3	157	1	0	0	0	0	0	0	0	1	9314	273	10	3		3	MARCH8	10	45953840	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1814140	45953840	89580907	369	9976											
SYT15	83849	broad.mit.edu	37	10	46963839	46963839	+	Splice_Site	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	46963839	C	T	46963839	5	4	157	1	0	0	0	0	0	0	1	0	15483	579	20	2	203	2	SYT15	10	46963839	Splice_Site	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1009999	46963839	88570908	370	9977											
GDF10	2662	broad.mit.edu	37	10	48429372	48429372	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	48429372	G	A	48429372	2	1	157	1	0	0	0	0	0	0	0	1	6318	991	35	2		2	GDF10	10	48429372	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1465533	48429372	87105375	371	9978											
NCOA4	8031	broad.mit.edu	37	10	51584973	51584973	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	51584973	G	A	51584973	3	1	157	1	0	0	0	0	1	0	0	0	10238	1377	48	2	1150	2	NCOA4	10	51584973	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3155601	51584973	83949774	372	9979											
IPMK	253430	broad.mit.edu	37	10	59956101	59956101	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	59956101	A	G	59956101	2	3	157	1	0	0	0	0	0	0	0	1	7799	330	12	3		3	IPMK	10	59956101	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	8371128	59956101	75578646	373	9980											
ANK3	288	broad.mit.edu	37	10	61967865	61967865	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	61967865	C	T	61967865	3	4	157	1	0	0	0	0	1	0	0	0	622	710	25	2	12479	2	ANK3	10	61967865	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2011764	61967865	73566882	374	9981											
H2AFY2	55506	broad.mit.edu	37	10	71868887	71868887	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	71868887	A	G	71868887	3	3	157	1	0	0	0	0	1	0	0	0	6937	275	10	3	903	3	H2AFY2	10	71868887	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	9901022	71868887	63665860	375	9982											
P4HA1	5033	broad.mit.edu	37	10	74834565	74834565	+	Splice_Site	SNP	C	C	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	74834565	C	G	74834565	5	3	157	1	0	0	0	0	0	0	1	0	11363	521	18	4	1658	4	P4HA1	10	74834565	Splice_Site	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2965678	74834565	60700182	376	9983											
DLG5	9231	broad.mit.edu	37	10	79567599	79567599	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	79567599	T	C	79567599	3	2	157	1	0	0	0	0	1	0	0	0	4560	1551	54	3	1040	3	DLG5	10	79567599	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	4733034	79567599	55967148	377	9984											
FAM35A	54537	broad.mit.edu	37	10	88911131	88911131	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	88911131	T	C	88911131	3	2	157	1	0	0	0	0	1	0	0	0	5560	1667	58	3	22	3	FAM35A	10	88911131	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	9343532	88911131	46623616	378	9985											
IFIT1B	439996	broad.mit.edu	37	10	91143311	91143311	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	91143311	T	C	91143311	2	2	157	1	0	0	0	0	0	0	0	1	7529	1606	56	3		3	IFIT1B	10	91143311	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2232180	91143311	44391436	379	9986											
HHEX	3087	broad.mit.edu	37	10	94454326	94454328	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	94454328	AAG	-	94454326	7	5	157	1	0	1	0	1	0	0	0	0	7098	14	1	0	628	0	HHEX	10	94454326	In_Frame_Del	DEL	AAG	TCGA-B0-5098-01A-01D-1421-08	3311015	94454326	41080421	380	9987											
EXOC6	54536	broad.mit.edu	37	10	94733826	94733826	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	94733826	C	T	94733826	3	4	157	1	0	0	0	0	1	0	0	0	5310	710	25	2	1950	2	EXOC6	10	94733826	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	279500	94733826	40800921	381	9988											
NOC3L	64318	broad.mit.edu	37	10	96116290	96116290	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	96116290	A	G	96116290	5	3	157	1	0	0	0	0	0	0	1	0	10521	405	14	3	1903	3	NOC3L	10	96116290	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1382464	96116290	39418457	382	9989											
PDLIM1	9124	broad.mit.edu	37	10	96998377	96998377	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	96998377	T	A	96998377	3	1	157	1	0	0	0	0	1	0	0	0	11686	1435	50	5	246	5	PDLIM1	10	96998377	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	882087	96998377	38536370	383	9990											
FAM178A	55719	broad.mit.edu	37	10	102676519	102676519	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	102676519	A	G	102676519	3	3	157	1	0	0	0	0	1	0	0	0	5507	217	8	3	387	3	FAM178A	10	102676519	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	5678142	102676519	32858228	384	9991											
DPCD	25911	broad.mit.edu	37	10	103360984	103360984	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	103360984	A	G	103360984	3	3	157	1	0	0	0	0	1	0	0	0	4713	131	5	3	309	3	DPCD	10	103360984	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	684465	103360984	32173763	385	9992											
PDCD11	22984	broad.mit.edu	37	10	105173796	105173796	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	105173796	G	C	105173796	3	2	157	1	0	0	0	0	1	0	0	0	11624	942	33	4	1293	4	PDCD11	10	105173796	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1812812	105173796	30360951	386	9993											
ATRNL1	26033	broad.mit.edu	37	10	117093811	117093811	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	117093811	T	C	117093811	2	2	157	1	0	0	0	0	0	0	0	1	1207	1403	49	3		3	ATRNL1	10	117093811	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	11920015	117093811	18440936	387	9994											
INPP5F	22876	broad.mit.edu	37	10	121571296	121571296	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	121571296	A	C	121571296	3	2	157	1	0	0	0	0	1	0	0	0	7765	246	9	5	1773	5	INPP5F	10	121571296	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	4477485	121571296	13963451	388	9995											
TACC2	10579	broad.mit.edu	37	10	123844471	123844471	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	123844471	C	T	123844471	3	4	157	1	0	0	0	0	1	0	0	0	15514	855	30	2	2466	2	TACC2	10	123844471	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2273175	123844471	11690276	389	9996											
C10orf137	26098	broad.mit.edu	37	10	127418872	127418872	+	Silent	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	127418872	A	T	127418872	2	4	157	1	0	0	0	0	0	0	0	1	1596	117	5	5		5	C10orf137	10	127418872	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3574401	127418872	8115875	390	9997	111	2									
C10orf137	26098	broad.mit.edu	37	10	127418877	127418877	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	127418877	A	T	127418877	3	4	157	1	0	0	0	0	1	0	0	0	1596	101	4	5	965	5	C10orf137	10	127418877	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	5	127418877	8115870	391	9998	111	2									
DHX32	55760	broad.mit.edu	37	10	127548334	127548336	+	In_Frame_Del	DEL	ATA	ATA	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	127548336	ATA	-	127548334	7	5	157	1	0	1	0	1	0	0	0	0	4507	224	8	0	1580	0	DHX32	10	127548334	In_Frame_Del	DEL	ATA	TCGA-B0-5098-01A-01D-1421-08	129457	127548334	7986413	392	9999											
LRRC27	80313	broad.mit.edu	37	10	134161565	134161565	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	134161565	A	G	134161565	3	3	157	1	0	0	0	0	1	0	0	0	8988	362	13	3	649	3	LRRC27	10	134161565	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	6613231	134161565	1373182	393	10000											
KNDC1	85442	broad.mit.edu	37	10	135013087	135013087	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	135013087	C	T	135013087	4	4	157	1	0	0	0	0	0	1	0	0	8433	711	25	2	2942	2	KNDC1	10	135013087	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	851522	135013087	521660	394	10001											
BET1L	51272	broad.mit.edu	37	11	205968	205968	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	205968	A	G	205968	3	3	157	1	0	0	0	0	1	0	0	0	1409	275	10	3	389	3	BET1L	11	205968	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08		205968	134800548	395	10002											
MUC6	4588	broad.mit.edu	37	11	1028224	1028224	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	1028224	A	G	1028224	5	3	157	1	0	0	0	0	0	0	1	0	9987	173	6	3	5644	3	MUC6	11	1028224	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	822256	1028224	133978292	396	10003											
KCNQ1	3784	broad.mit.edu	37	11	2609949	2609949	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	2609949	A	-	2609949	7	5	157	1	0	1	0	1	0	0	0	0	8089	247	9	0	1305	0	KCNQ1	11	2609949	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	1581725	2609949	132396567	397	10004											
HBE1	3046	broad.mit.edu	37	11	5291119	5291119	+	Translation_Start_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	5291119	A	G	5291119	1	3	157	1	0	0	0	0	0	0	0	0	6987	217	8	3		3	HBE1	11	5291119	Translation_Start_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2681170	5291119	129715397	398	10005											
OR51Q1	390061	broad.mit.edu	37	11	5444095	5444095	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	5444095	T	C	5444095	3	2	157	1	0	0	0	0	1	0	0	0	11111	1609	56	3	667	3	OR51Q1	11	5444095	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	152976	5444095	129562421	399	10006											
UBQLN3	50613	broad.mit.edu	37	11	5529517	5529517	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	5529517	A	G	5529517	2	3	157	1	0	0	0	0	0	0	0	1	16910	146	6	3		3	UBQLN3	11	5529517	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	85422	5529517	129476999	400	10007											
APBB1	322	broad.mit.edu	37	11	6431909	6431909	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	6431909	G	A	6431909	2	1	157	1	0	0	0	0	0	0	0	1	759	962	34	2		2	APBB1	11	6431909	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	902392	6431909	128574607	401	10008											
DCHS1	8642	broad.mit.edu	37	11	6646021	6646021	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	6646021	C	A	6646021	3	1	157	1	0	0	0	0	1	0	0	0	4289	652	23	4	2679	4	DCHS1	11	6646021	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	214112	6646021	128360495	402	10009											
DCHS1	8642	broad.mit.edu	37	11	6662142	6662142	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	6662142	G	-	6662142	7	5	157	1	0	1	0	1	0	0	0	0	4289	1115	39	0	9273	0	DCHS1	11	6662142	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	16121	6662142	128344374	403	10010											
NELL1	4745	broad.mit.edu	37	11	20691274	20691274	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	20691274	C	A	20691274	3	1	157	1	0	0	0	0	1	0	0	0	10340	652	23	4	7	4	NELL1	11	20691274	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	14029132	20691274	114315242	404	10011											
LUZP2	338645	broad.mit.edu	37	11	24518815	24518815	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	24518815	T	C	24518815	3	2	157	1	0	0	0	0	1	0	0	0	9094	1580	55	3	28	3	LUZP2	11	24518815	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	3827541	24518815	110487701	405	10012											
KIF18A	81930	broad.mit.edu	37	11	28116199	28116199	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	28116199	T	C	28116199	2	2	157	1	0	0	0	0	0	0	0	1	8287	1451	51	3		3	KIF18A	11	28116199	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	3597384	28116199	106890317	406	10013											
QSER1	79832	broad.mit.edu	37	11	32953741	32953741	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	32953741	C	T	32953741	4	4	157	1	0	0	0	0	0	1	0	0	12895	876	31	1	556	1	QSER1	11	32953741	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	4837542	32953741	102052775	407	10014											
QSER1	79832	broad.mit.edu	37	11	32975569	32975569	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	32975569	A	C	32975569	3	2	157	1	0	0	0	0	1	0	0	0	12895	40	2	5	3967	5	QSER1	11	32975569	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	21828	32975569	102030947	408	10015											
FBXO3	26273	broad.mit.edu	37	11	33792303	33792304	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	33792304	-	T	33792303	7	5	157	1	0	1	1	0	0	0	0	0	5746	449	16	0	1286	0	FBXO3	11	33792303	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	816734	33792303	101214213	409	10016											
ALX4	60529	broad.mit.edu	37	11	44297022	44297022	+	Missense_Mutation	SNP	C	C	T	rs104894193		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	44297022	C	T	44297022	3	4	157	1	0	0	0	0	1	0	0	0	558	652	23	1	594	1	ALX4	11	44297022	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	10504719	44297022	90709494	410	10017											
ZNF408	79797	broad.mit.edu	37	11	46726767	46726767	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	46726767	G	A	46726767	3	1	157	1	0	0	0	0	1	0	0	0	17900	1145	40	1	1567	1	ZNF408	11	46726767	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2429745	46726767	88279749	411	10018											
MADD	8567	broad.mit.edu	37	11	47305943	47305943	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	47305943	C	G	47305943	3	3	157	1	0	0	0	0	1	0	0	0	9159	478	17	4	2026	4	MADD	11	47305943	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	579176	47305943	87700573	412	10019											
TRIM48	79097	broad.mit.edu	37	11	55032522	55032522	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	55032522	T	C	55032522	3	2	157	1	0	0	0	0	1	0	0	0	16535	1493	52	3	197	3	TRIM48	11	55032522	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	7726579	55032522	79973994	413	10020											
OR4S2	219431	broad.mit.edu	37	11	55418395	55418395	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	55418395	A	G	55418395	3	3	157	1	0	0	0	0	1	0	0	0	11090	130	5	3	18	3	OR4S2	11	55418395	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	385873	55418395	79588121	414	10021											
FADS3	3995	broad.mit.edu	37	11	61644278	61644278	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	61644278	G	-	61644278	7	5	157	1	0	1	0	1	0	0	0	0	5371	1363	47	0		0	FADS3	11	61644278	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	6225883	61644278	73362238	415	10022											
BSCL2	26580	broad.mit.edu	37	11	62462149	62462149	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	62462149	A	G	62462149	3	3	157	1	0	0	0	0	1	0	0	0	1529	372	13	3	899	3	BSCL2	11	62462149	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	817871	62462149	72544367	416	10023											
HNRNPUL2	221092	broad.mit.edu	37	11	62484649	62484650	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	62484650	AA	-	62484649	7	5	157	1	0	1	0	1	0	0	0	0	7282	131	5	0	466	0	HNRNPUL2	11	62484649	Frame_Shift_Del	DEL	AA	TCGA-B0-5098-01A-01D-1421-08	22500	62484649	72521867	417	10024											
HNRNPUL2	221092	broad.mit.edu	37	11	62489666	62489666	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	62489666	A	G	62489666	3	3	157	1	0	0	0	0	1	0	0	0	7282	43	2	3	993	3	HNRNPUL2	11	62489666	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	5017	62489666	72516850	418	10025											
SLC3A2	6520	broad.mit.edu	37	11	62623778	62623778	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	62623778	G	A	62623778	3	1	157	1	0	0	0	0	1	0	0	0	14640	1145	40	1	39	1	SLC3A2	11	62623778	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	134112	62623778	72382738	419	10026											
PLCB3	5331	broad.mit.edu	37	11	64024202	64024202	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	64024202	C	A	64024202	4	1	157	1	0	0	0	0	0	1	0	0	12036	576	20	4	1016	4	PLCB3	11	64024202	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1400424	64024202	70982314	420	10027											
CCDC88B	283234	broad.mit.edu	37	11	64108789	64108789	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	64108789	G	A	64108789	3	1	157	1	0	0	0	0	1	0	0	0	2866	971	34	2	454	2	CCDC88B	11	64108789	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	84587	64108789	70897727	421	10028											
CDC42BPG	55561	broad.mit.edu	37	11	64606329	64606329	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	64606329	C	T	64606329	3	4	157	1	0	0	0	0	1	0	0	0	3076	768	27	1	3853	1	CDC42BPG	11	64606329	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	497540	64606329	70400187	422	10029											
SYVN1	84447	broad.mit.edu	37	11	64898665	64898665	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	64898665	C	T	64898665	2	4	157	1	0	0	0	0	0	0	0	1	15499	564	20	2		2	SYVN1	11	64898665	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	292336	64898665	70107851	423	10030											
NPAS4	266743	broad.mit.edu	37	11	66192164	66192164	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	66192164	T	C	66192164	2	2	157	1	0	0	0	0	0	0	0	1	10572	1461	51	3		3	NPAS4	11	66192164	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1293499	66192164	68814352	424	10031											
DPP3	10072	broad.mit.edu	37	11	66262690	66262690	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	66262690	C	T	66262690	3	4	157	1	0	0	0	0	1	0	0	0	4730	710	25	2	1449	2	DPP3	11	66262690	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	70526	66262690	68743826	425	10032											
SPTBN2	6712	broad.mit.edu	37	11	66453855	66453855	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	66453855	G	A	66453855	3	1	157	1	0	0	0	0	1	0	0	0	15132	1073	37	1		1	SPTBN2	11	66453855	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	191165	66453855	68552661	426	10033											
KDM2A	22992	broad.mit.edu	37	11	66999421	66999421	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	66999421	C	T	66999421	3	4	157	1	0	0	0	0	1	0	0	0	8131	797	28	2	1511	2	KDM2A	11	66999421	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	545566	66999421	68007095	427	10034											
ANKRD13D	338692	broad.mit.edu	37	11	67068486	67068486	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	67068486	G	A	67068486	3	1	157	1	0	0	0	0	1	0	0	0	644	1291	45	2	1141	2	ANKRD13D	11	67068486	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	69065	67068486	67938030	428	10035											
SSH3	54961	broad.mit.edu	37	11	67075160	67075160	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	67075160	C	T	67075160	3	4	157	1	0	0	0	0	1	0	0	0	15198	797	28	2	769	2	SSH3	11	67075160	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	6674	67075160	67931356	429	10036											
CORO1B	57175	broad.mit.edu	37	11	67207642	67207642	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	67207642	A	G	67207642	2	3	157	1	0	0	0	0	0	0	0	1	3756	378	14	3		3	CORO1B	11	67207642	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	132482	67207642	67798874	430	10037											
C11orf24	53838	broad.mit.edu	37	11	68029863	68029863	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	68029863	C	T	68029863	2	4	157	1	0	0	0	0	0	0	0	1	1637	523	19	1		1	C11orf24	11	68029863	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	822221	68029863	66976653	431	10038											
PAAF1	80227	broad.mit.edu	37	11	73610254	73610254	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	73610254	A	G	73610254	3	3	157	1	0	0	0	0	1	0	0	0	11369	217	8	3	364	3	PAAF1	11	73610254	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	5580391	73610254	61396262	432	10039											
ARRB1	408	broad.mit.edu	37	11	74985123	74985123	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	74985123	G	A	74985123	2	1	157	1	0	0	0	0	0	0	0	1	980	1310	46	2		2	ARRB1	11	74985123	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1374869	74985123	60021393	433	10040											
TRIM49	57093	broad.mit.edu	37	11	89537226	89537226	+	Splice_Site	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	89537226	C	-	89537226	8	5	157	1	0	1	0	1	0	0	1	0	16536	521	18	0	970	0	TRIM49	11	89537226	Splice_Site	DEL	C	TCGA-B0-5098-01A-01D-1421-08	14552103	89537226	45469290	434	10041											
MRE11A	4361	broad.mit.edu	37	11	94203744	94203744	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	94203744	C	T	94203744	3	4	157	1	0	0	0	0	1	0	0	0	9766	565	20	2	1264	2	MRE11A	11	94203744	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	4666518	94203744	40802772	435	10042											
TMPRSS4	56649	broad.mit.edu	37	11	117984053	117984053	+	Silent	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	117984053	G	T	117984053	2	4	157	1	0	0	0	0	0	0	0	1	16261	1335	47	4		4	TMPRSS4	11	117984053	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	23780309	117984053	17022463	436	10043											
DPAGT1	1798	broad.mit.edu	37	11	118971120	118971120	+	Splice_Site	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	118971120	T	G	118971120	5	3	157	1	0	0	0	0	0	0	1	0	4712	1594	55	5	755	5	DPAGT1	11	118971120	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	987067	118971120	16035396	437	10044											
ABCG4	64137	broad.mit.edu	37	11	119025497	119025497	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	119025497	G	A	119025497	2	1	157	1	0	0	0	0	0	0	0	1	70	1103	39	1		1	ABCG4	11	119025497	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	54377	119025497	15981019	438	10045											
C1QTNF5	114902	broad.mit.edu	37	11	119210050	119210050	+	Silent	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	119210050	G	C	119210050	2	2	157	1	0	0	0	0	0	0	0	1	1968	929	33	4		4	C1QTNF5	11	119210050	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	184553	119210050	15796466	439	10046											
TECTA	7007	broad.mit.edu	37	11	120976644	120976644	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	120976644	T	C	120976644	3	2	157	1	0	0	0	0	1	0	0	0	15759	1609	56	3	175	3	TECTA	11	120976644	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1766594	120976644	14029872	440	10047											
OR10G8	219869	broad.mit.edu	37	11	123900597	123900597	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	123900597	G	A	123900597	3	1	157	1	0	0	0	0	1	0	0	0	10910	1203	42	2	270	2	OR10G8	11	123900597	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2923953	123900597	11105919	441	10048			1	18		5	5	8918	N	T_G_C	8.958734e-05
OR10G7	390265	broad.mit.edu	37	11	123909233	123909233	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	123909233	G	A	123909233	3	1	157	1	0	0	0	0	1	0	0	0	10909	1261	44	2	463	2	OR10G7	11	123909233	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	8636	123909233	11097283	442	10049			1	18		5	5	8918	N	T_G_C	8.958734e-05
OR10G7	390265	broad.mit.edu	37	11	123909420	123909420	+	Missense_Mutation	SNP	C	C	T	rs147002134	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	123909420	C	T	123909420	3	4	157	1	0	0	0	0	1	0	0	0	10909	536	19	1	650	1	OR10G7	11	123909420	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	187	123909420	11097096	443	10050			1	18		5	5	8918	N	T_G_C	8.958734e-05
OR10G7	390265	broad.mit.edu	37	11	123909474	123909474	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	123909474	T	A	123909474	3	1	157	1	0	0	0	0	1	0	0	0	10909	1493	52	5	704	5	OR10G7	11	123909474	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	54	123909474	11097042	444	10051			1	18		5	5	8918	N	T_G_C	8.958734e-05
OR10G7	390265	broad.mit.edu	37	11	123909514	123909514	+	Silent	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	123909514	G	C	123909514	2	2	157	1	0	0	0	0	0	0	0	1	10909	987	35	4		4	OR10G7	11	123909514	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	40	123909514	11097002	445	10052			1	18		5	5	8918	N	T_G_C	8.958734e-05
ST3GAL4	6484	broad.mit.edu	37	11	126283516	126283516	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	126283516	T	C	126283516	2	2	157	1	0	0	0	0	0	0	0	1	15229	1471	51	3		3	ST3GAL4	11	126283516	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2374002	126283516	8723000	446	10053											
ARHGAP32	9743	broad.mit.edu	37	11	128851410	128851410	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	128851410	T	C	128851410	3	2	157	1	0	0	0	0	1	0	0	0	881	1464	51	3	4652	3	ARHGAP32	11	128851410	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2567894	128851410	6155106	447	10054											
PRDM10	56980	broad.mit.edu	37	11	129794867	129794867	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	129794867	A	G	129794867	2	3	157	1	0	0	0	0	0	0	0	1	12461	117	5	3		3	PRDM10	11	129794867	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	943457	129794867	5211649	448	10055											
ZBTB44	29068	broad.mit.edu	37	11	130131061	130131061	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	130131061	A	G	130131061	2	3	157	1	0	0	0	0	0	0	0	1	17557	126	5	3		3	ZBTB44	11	130131061	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	336194	130131061	4875455	449	10056											
SLC6A12	6539	broad.mit.edu	37	12	309834	309834	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	309834	C	-	309834	7	5	157	1	0	1	0	1	0	0	0	0	14688	507	18	0	1190	0	SLC6A12	12	309834	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08		309834	133542061	450	10057											
RAD52	5893	broad.mit.edu	37	12	1036424	1036424	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	1036424	A	G	1036424	2	3	157	1	0	0	0	0	0	0	0	1	13004	30	2	3		3	RAD52	12	1036424	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	726590	1036424	132815471	451	10058											
FBXL14	144699	broad.mit.edu	37	12	1702059	1702059	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	1702059	G	A	1702059	4	1	157	1	0	0	0	0	0	1	0	0	5717	1328	46	2	90	2	FBXL14	12	1702059	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	665635	1702059	132149836	452	10059											
DYRK4	8798	broad.mit.edu	37	12	4721810	4721810	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	4721810	G	T	4721810	3	4	157	1	0	0	0	0	1	0	0	0	4860	1000	35	4	1285	4	DYRK4	12	4721810	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3019751	4721810	129130085	453	10060											
KCNA1	3736	broad.mit.edu	37	12	5020549	5020549	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	5020549	C	T	5020549	3	4	157	1	0	0	0	0	1	0	0	0	8008	536	19	1	7	1	KCNA1	12	5020549	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	298739	5020549	128831346	454	10061											
KCNA5	3741	broad.mit.edu	37	12	5155012	5155012	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	5155012	G	-	5155012	7	5	157	1	0	1	0	1	0	0	0	0	8013	1348	47	0	1701	0	KCNA5	12	5155012	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	134463	5155012	128696883	455	10062											
VWF	7450	broad.mit.edu	37	12	6076653	6076653	+	Splice_Site	SNP	A	A	G	rs112100565		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	6076653	A	G	6076653	5	3	157	1	0	0	0	0	0	0	1	0	17258	202	7	3	579	3	VWF	12	6076653	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	921641	6076653	127775242	456	10063											
VWF	7450	broad.mit.edu	37	12	6122671	6122671	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	6122671	A	G	6122671	3	3	157	1	0	0	0	0	1	0	0	0	17258	246	9	3	2929	3	VWF	12	6122671	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	46018	6122671	127729224	457	10064											
CHD4	1108	broad.mit.edu	37	12	6710842	6710842	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	6710842	T	C	6710842	3	2	157	1	0	0	0	0	1	0	0	0	3329	1812	63	3	5353	3	CHD4	12	6710842	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	588171	6710842	127141053	458	10065											
CD4	920	broad.mit.edu	37	12	6924067	6924067	+	Silent	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	6924067	T	A	6924067	2	1	157	1	0	0	0	0	0	0	0	1	3016	1538	54	5		5	CD4	12	6924067	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	213225	6924067	126927828	459	10066											
PRB4	5545	broad.mit.edu	37	12	11461543	11461543	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	11461543	G	-	11461543	7	5	157	1	0	1	0	1	0	0	0	0	12455	1348	47	0	373	0	PRB4	12	11461543	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	4537476	11461543	122390352	460	10067											
ATF7IP	55729	broad.mit.edu	37	12	14628904	14628904	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	14628904	T	C	14628904	5	2	157	1	0	0	0	0	0	0	1	0	1087	1652	57	3	2981	3	ATF7IP	12	14628904	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	3167361	14628904	119222991	461	10068											
GUCY2C	2984	broad.mit.edu	37	12	14781652	14781652	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	14781652	T	-	14781652	7	5	157	1	0	1	0	1	0	0	0	0	6903	1725	60	0	1076	0	GUCY2C	12	14781652	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	152748	14781652	119070243	462	10069											
STK38L	23012	broad.mit.edu	37	12	27461270	27461270	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	27461270	A	G	27461270	5	3	157	1	0	0	0	0	0	0	1	0	15316	434	15	3	195	3	STK38L	12	27461270	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	12679618	27461270	106390625	463	10070											
CCDC91	55297	broad.mit.edu	37	12	28460651	28460651	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	28460651	T	C	28460651	3	2	157	1	0	0	0	0	1	0	0	0	2872	1493	52	3	563	3	CCDC91	12	28460651	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	999381	28460651	105391244	464	10071											
TMTC1	83857	broad.mit.edu	37	12	29920872	29920872	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	29920872	T	C	29920872	3	2	157	1	0	0	0	0	1	0	0	0	16272	1725	60	3	2277	3	TMTC1	12	29920872	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1460221	29920872	103931023	465	10072											
ADAMTS20	80070	broad.mit.edu	37	12	43826136	43826136	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	43826136	G	A	43826136	3	1	157	1	0	0	0	0	1	0	0	0	266	1174	41	2	2740	2	ADAMTS20	12	43826136	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	13905264	43826136	90025759	466	10073											
MCRS1	10445	broad.mit.edu	37	12	49953240	49953240	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	49953240	C	T	49953240	3	4	157	1	0	0	0	0	1	0	0	0	9406	536	19	1	322	1	MCRS1	12	49953240	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	6127104	49953240	83898655	467	10074											
PRPF40B	25766	broad.mit.edu	37	12	50031329	50031329	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	50031329	G	T	50031329	3	4	157	1	0	0	0	0	1	0	0	0	12582	971	34	4	1633	4	PRPF40B	12	50031329	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	78089	50031329	83820566	468	10075											
KRT2	3849	broad.mit.edu	37	12	53045390	53045390	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	53045390	A	G	53045390	2	3	157	1	0	0	0	0	0	0	0	1	8464	146	6	3		3	KRT2	12	53045390	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3014061	53045390	80806505	469	10076											
KRT4	3851	broad.mit.edu	37	12	53202484	53202484	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	53202484	G	T	53202484	3	4	157	1	0	0	0	0	1	0	0	0	8484	991	35	4	597	4	KRT4	12	53202484	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	157094	53202484	80649411	470	10077											
HOXC11	3227	broad.mit.edu	37	12	54367383	54367383	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	54367383	T	A	54367383	3	1	157	1	0	0	0	0	1	0	0	0	7317	1551	54	5	360	5	HOXC11	12	54367383	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1164899	54367383	79484512	471	10078											
ERBB3	2065	broad.mit.edu	37	12	56479046	56479046	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	56479046	C	T	56479046	3	4	157	1	0	0	0	0	1	0	0	0	5210	797	28	2	512	2	ERBB3	12	56479046	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2111663	56479046	77372849	472	10079											
SMARCC2	6601	broad.mit.edu	37	12	56566385	56566385	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	56566385	T	-	56566385	7	5	157	1	0	1	0	1	0	0	0	0	14789	1609	56	0	1934	0	SMARCC2	12	56566385	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	87339	56566385	77285510	473	10080											
STAT6	6778	broad.mit.edu	37	12	57498535	57498535	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	57498535	A	G	57498535	3	3	157	1	0	0	0	0	1	0	0	0	15282	188	7	3	1532	3	STAT6	12	57498535	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	932150	57498535	76353360	474	10081											
LRP1	4035	broad.mit.edu	37	12	57605026	57605026	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	57605026	C	T	57605026	2	4	157	1	0	0	0	0	0	0	0	1	8958	747	26	2		2	LRP1	12	57605026	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	106491	57605026	76246869	475	10082											
MARS	4141	broad.mit.edu	37	12	57894296	57894296	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	57894296	C	T	57894296	2	4	157	1	0	0	0	0	0	0	0	1	9323	871	31	1		1	MARS	12	57894296	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	289270	57894296	75957599	476	10083											
KIF5A	3798	broad.mit.edu	37	12	57976896	57976896	+	Silent	SNP	G	G	A	rs148434838	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	57976896	G	A	57976896	2	1	157	1	0	0	0	0	0	0	0	1	8312	1132	40	1		1	KIF5A	12	57976896	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	82600	57976896	75874999	477	10084											
DTX3	196403	broad.mit.edu	37	12	58000848	58000848	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	58000848	C	-	58000848	7	5	157	1	0	1	0	1	0	0	0	0	4797	855	30	0	208	0	DTX3	12	58000848	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	23952	58000848	75851047	478	10085											
DTX3	196403	broad.mit.edu	37	12	58001073	58001073	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	58001073	C	-	58001073	7	5	157	1	0	1	0	1	0	0	0	0	4797	855	30	0	433	0	DTX3	12	58001073	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	225	58001073	75850822	479	10086											
LRIG3	121227	broad.mit.edu	37	12	59274640	59274640	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	59274640	C	T	59274640	2	4	157	1	0	0	0	0	0	0	0	1	8953	564	20	2		2	LRIG3	12	59274640	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1273567	59274640	74577255	480	10087											
XPOT	11260	broad.mit.edu	37	12	64812734	64812734	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	64812734	T	C	64812734	3	2	157	1	0	0	0	0	1	0	0	0	17462	1638	57	3	367	3	XPOT	12	64812734	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5538094	64812734	69039161	481	10088											
MSRB3	253827	broad.mit.edu	37	12	65857074	65857074	+	Missense_Mutation	SNP	C	C	T	rs144038296	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	65857074	C	T	65857074	3	4	157	1	0	0	0	0	1	0	0	0	9896	652	23	1	653	1	MSRB3	12	65857074	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1044340	65857074	67994821	482	10089											
KRR1	11103	broad.mit.edu	37	12	75900592	75900592	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	75900592	T	G	75900592	3	3	157	1	0	0	0	0	1	0	0	0	8453	1722	60	5	814	5	KRR1	12	75900592	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	10043518	75900592	57951303	483	10090											
CSRP2	1466	broad.mit.edu	37	12	77257107	77257107	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	77257107	A	G	77257107	2	3	157	1	0	0	0	0	0	0	0	1	3969	11	1	3		3	CSRP2	12	77257107	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1356515	77257107	56594788	484	10091											
TMTC2	160335	broad.mit.edu	37	12	83444732	83444732	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	83444732	A	-	83444732	7	5	157	1	0	1	0	1	0	0	0	0	16273	117	5	0	2240	0	TMTC2	12	83444732	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	6187625	83444732	50407163	485	10092											
LRRIQ1	84125	broad.mit.edu	37	12	85521681	85521681	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	85521681	G	T	85521681	3	4	157	1	0	0	0	0	1	0	0	0	9036	1000	35	4	4149	4	LRRIQ1	12	85521681	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2076949	85521681	48330214	486	10093											
TMCC3	57458	broad.mit.edu	37	12	94975436	94975436	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	94975436	A	G	94975436	2	3	157	1	0	0	0	0	0	0	0	1	16006	224	8	3		3	TMCC3	12	94975436	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	9453755	94975436	38876459	487	10094											
APAF1	317	broad.mit.edu	37	12	99100325	99100325	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	99100325	T	C	99100325	2	2	157	1	0	0	0	0	0	0	0	1	755	1461	51	3		3	APAF1	12	99100325	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	4124889	99100325	34751570	488	10095											
UHRF1BP1L	23074	broad.mit.edu	37	12	100502181	100502181	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	100502181	T	C	100502181	3	2	157	1	0	0	0	0	1	0	0	0	16981	1754	61	3	4308	3	UHRF1BP1L	12	100502181	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1401856	100502181	33349714	489	10096											
NR1H4	9971	broad.mit.edu	37	12	100957204	100957204	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	100957204	G	A	100957204	3	1	157	1	0	0	0	0	1	0	0	0	10626	1377	48	2	1390	2	NR1H4	12	100957204	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	455023	100957204	32894691	490	10097											
SELPLG	6404	broad.mit.edu	37	12	109017315	109017315	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	109017315	C	G	109017315	3	3	157	1	0	0	0	0	1	0	0	0	14033	739	26	4	473	4	SELPLG	12	109017315	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	8060111	109017315	24834580	491	10098											
RBM19	9904	broad.mit.edu	37	12	114395588	114395588	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	114395588	T	C	114395588	5	2	157	1	0	0	0	0	0	0	1	0	13134	1565	54	3	2119	3	RBM19	12	114395588	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5378273	114395588	19456307	492	10099											
GCN1L1	10985	broad.mit.edu	37	12	120591026	120591026	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	120591026	G	-	120591026	7	5	157	1	0	1	0	1	0	0	0	0	6306	987	35	0	4066	0	GCN1L1	12	120591026	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	6195438	120591026	13260869	493	10100											
GCN1L1	10985	broad.mit.edu	37	12	120599736	120599736	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	120599736	C	G	120599736	3	3	157	1	0	0	0	0	1	0	0	0	6306	710	25	4	5877	4	GCN1L1	12	120599736	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	8710	120599736	13252159	494	10101											
LRRC43	254050	broad.mit.edu	37	12	122674785	122674785	+	Silent	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	122674785	A	T	122674785	2	4	157	1	0	0	0	0	0	0	0	1	9008	233	9	5		5	LRRC43	12	122674785	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2075049	122674785	11177110	495	10102											
KNTC1	9735	broad.mit.edu	37	12	123087702	123087702	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	123087702	G	A	123087702	2	1	157	1	0	0	0	0	0	0	0	1	8435	1074	38	1		1	KNTC1	12	123087702	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	412917	123087702	10764193	496	10103											
DHX37	57647	broad.mit.edu	37	12	125467060	125467060	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	125467060	T	G	125467060	3	3	157	1	0	0	0	0	1	0	0	0	4512	1841	64	5	3187	5	DHX37	12	125467060	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2379358	125467060	8384835	497	10104											
TMEM132D	121256	broad.mit.edu	37	12	129559558	129559558	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	129559558	G	A	129559558	3	1	157	1	0	0	0	0	1	0	0	0	16059	1145	40	1	1141	1	TMEM132D	12	129559558	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4092498	129559558	4292337	498	10105											
FZD10	11211	broad.mit.edu	37	12	130647929	130647929	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	130647929	A	G	130647929	3	3	157	1	0	0	0	0	1	0	0	0	6136	217	8	3	444	3	FZD10	12	130647929	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1088371	130647929	3203966	499	10106											
GPR133	283383	broad.mit.edu	37	12	131466593	131466593	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	131466593	T	C	131466593	3	2	157	1	0	0	0	0	1	0	0	0	6650	1551	54	3	493	3	GPR133	12	131466593	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	818664	131466593	2385302	500	10107											
EP400	57634	broad.mit.edu	37	12	132537936	132537936	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	132537936	C	-	132537936	7	5	157	1	0	1	0	1	0	0	0	0	5151	507	18	0	7685	0	EP400	12	132537936	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	1071343	132537936	1313959	501	10108											
ZMYM5	9205	broad.mit.edu	37	13	20398645	20398645	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	20398645	T	-	20398645	7	5	157	1	0	1	0	1	0	0	0	0	17715	1493	52	0	31	0	ZMYM5	13	20398645	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08		20398645	94771233	502	10109											
IFT88	8100	broad.mit.edu	37	13	21205180	21205180	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	21205180	A	-	21205180	7	5	157	1	0	1	0	1	0	0	0	0	7573	246	9	0	1414	0	IFT88	13	21205180	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	806535	21205180	93964698	503	10110											
LNX2	222484	broad.mit.edu	37	13	28155884	28155884	+	Translation_Start_Site	SNP	C	C	T	rs112460239		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	28155884	C	T	28155884	1	4	157	1	0	0	0	0	0	0	0	0	8873	551	19	1		1	LNX2	13	28155884	Translation_Start_Site	SNP	C	TCGA-B0-5098-01A-01D-1421-08	6950704	28155884	87013994	504	10111											
PAN3	255967	broad.mit.edu	37	13	28794507	28794507	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	28794507	T	C	28794507	3	2	157	1	0	0	0	0	1	0	0	0	11422	1764	61	3	1014	3	PAN3	13	28794507	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	638623	28794507	86375371	505	10112											
MTUS2	23281	broad.mit.edu	37	13	29599785	29599785	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	29599785	C	A	29599785	3	1	157	1	0	0	0	0	1	0	0	0	9973	623	22	4	982	4	MTUS2	13	29599785	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	805278	29599785	85570093	506	10113											
MTUS2	23281	broad.mit.edu	37	13	29600226	29600226	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	29600226	A	G	29600226	3	3	157	1	0	0	0	0	1	0	0	0	9973	72	3	3	1423	3	MTUS2	13	29600226	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	441	29600226	85569652	507	10114											
FREM2	341640	broad.mit.edu	37	13	39262566	39262566	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	39262566	C	A	39262566	3	1	157	1	0	0	0	0	1	0	0	0	6052	594	21	4	1087	4	FREM2	13	39262566	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	9662340	39262566	75907312	508	10115											
KBTBD6	89890	broad.mit.edu	37	13	41705364	41705364	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	41705364	C	A	41705364	3	1	157	1	0	0	0	0	1	0	0	0	8004	594	21	4	744	4	KBTBD6	13	41705364	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2442798	41705364	73464514	509	10116											
DGKH	160851	broad.mit.edu	37	13	42793830	42793830	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	42793830	T	C	42793830	2	2	157	1	0	0	0	0	0	0	0	1	4472	1509	53	3		3	DGKH	13	42793830	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1088466	42793830	72376048	510	10117											
RB1	5925	broad.mit.edu	37	13	49051536	49051536	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	49051536	A	G	49051536	2	3	157	1	0	0	0	0	0	0	0	1	13111	11	1	3		3	RB1	13	49051536	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	6257706	49051536	66118342	511	10118											
DIS3	22894	broad.mit.edu	37	13	73340159	73340159	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	73340159	T	C	73340159	3	2	157	1	0	0	0	0	1	0	0	0	4537	1464	51	3	983	3	DIS3	13	73340159	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	24288623	73340159	41829719	512	10119											
MYCBP2	23077	broad.mit.edu	37	13	77759324	77759326	+	In_Frame_Del	DEL	TAT	TAT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	77759326	TAT	-	77759324	7	5	157	1	0	1	0	1	0	0	0	0	10025	1638	57	0	9611	0	MYCBP2	13	77759324	In_Frame_Del	DEL	TAT	TCGA-B0-5098-01A-01D-1421-08	4419165	77759324	37410554	513	10120											
SLITRK6	84189	broad.mit.edu	37	13	86368261	86368261	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	86368261	C	T	86368261	3	4	157	1	0	0	0	0	1	0	0	0	14760	893	31	1	146	1	SLITRK6	13	86368261	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	8608937	86368261	28801617	514	10121											
GPR180	160897	broad.mit.edu	37	13	95264569	95264569	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	95264569	A	G	95264569	3	3	157	1	0	0	0	0	1	0	0	0	6683	449	16	3	440	3	GPR180	13	95264569	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	8896308	95264569	19905309	515	10122											
ABCC4	10257	broad.mit.edu	37	13	95822853	95822853	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	95822853	A	G	95822853	3	3	157	1	0	0	0	0	1	0	0	0	55	333	12	3	2341	3	ABCC4	13	95822853	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	558284	95822853	19347025	516	10123											
ARHGEF7	8874	broad.mit.edu	37	13	111935618	111935618	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	111935618	C	A	111935618	3	1	157	1	0	0	0	0	1	0	0	0	911	680	24	4	1987	4	ARHGEF7	13	111935618	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	16112765	111935618	3234260	517	10124											
LAMP1	3916	broad.mit.edu	37	13	113965071	113965071	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	113965071	A	-	113965071	7	5	157	1	0	1	0	1	0	0	0	0	8624	363	13	0	465	0	LAMP1	13	113965071	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	2029453	113965071	1204807	518	10125											
OR4Q3	441669	broad.mit.edu	37	14	20215693	20215693	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	20215693	T	C	20215693	3	2	157	1	0	0	0	0	1	0	0	0	11088	1493	52	3	109	3	OR4Q3	14	20215693	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08		20215693	87133847	519	10126											
THTPA	79178	broad.mit.edu	37	14	24026241	24026241	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	24026241	T	C	24026241	3	2	157	1	0	0	0	0	1	0	0	0	15893	1551	54	3	277	3	THTPA	14	24026241	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	3810548	24026241	83323299	520	10127											
DHRS4	10901	broad.mit.edu	37	14	24424296	24424296	+	Missense_Mutation	SNP	G	G	A	rs141661758		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	24424296	G	A	24424296	3	1	157	1	0	0	0	0	1	0	0	0	4494	1145	40	1	187	1	DHRS4	14	24424296	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	398055	24424296	82925244	521	10128	112	2									
DHRS4	10901	broad.mit.edu	37	14	24424297	24424297	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	24424297	T	G	24424297	3	3	157	1	0	0	0	0	1	0	0	0	4494	1667	58	5	188	5	DHRS4	14	24424297	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1	24424297	82925243	522	10129	112	2									
RNF31	55072	broad.mit.edu	37	14	24619565	24619565	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	24619565	C	T	24619565	2	4	157	1	0	0	0	0	0	0	0	1	13500	796	28	2		2	RNF31	14	24619565	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	195268	24619565	82729975	523	10130											
STRN3	29966	broad.mit.edu	37	14	31420083	31420083	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	31420083	T	A	31420083	3	1	157	1	0	0	0	0	1	0	0	0	15342	1664	58	5	1925	5	STRN3	14	31420083	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	6800518	31420083	75929457	524	10131											
SOS2	6655	broad.mit.edu	37	14	50666497	50666497	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	50666497	A	G	50666497	3	3	157	1	0	0	0	0	1	0	0	0	14950	101	4	3	3656	3	SOS2	14	50666497	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	19246414	50666497	56683043	525	10132											
BMP4	652	broad.mit.edu	37	14	54417384	54417384	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	54417384	C	T	54417384	3	4	157	1	0	0	0	0	1	0	0	0	1462	884	31	1	637	1	BMP4	14	54417384	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3750887	54417384	52932156	526	10133											
WDHD1	11169	broad.mit.edu	37	14	55411062	55411062	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	55411062	A	G	55411062	2	3	157	1	0	0	0	0	0	0	0	1	17283	175	7	3		3	WDHD1	14	55411062	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	993678	55411062	51938478	527	10134											
SPTB	6710	broad.mit.edu	37	14	65240097	65240097	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	65240097	T	C	65240097	2	2	157	1	0	0	0	0	0	0	0	1	15130	1567	55	3		3	SPTB	14	65240097	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	9829035	65240097	42109443	528	10135											
HEATR4	399671	broad.mit.edu	37	14	73987615	73987615	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	73987615	G	A	73987615	3	1	157	1	0	0	0	0	1	0	0	0	7037	1232	43	2	2130	2	HEATR4	14	73987615	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	8747518	73987615	33361925	529	10136											
TSHR	7253	broad.mit.edu	37	14	81609994	81609994	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	81609994	G	A	81609994	3	1	157	1	0	0	0	0	1	0	0	0	16634	1116	39	1	1767	1	TSHR	14	81609994	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	7622379	81609994	25739546	530	10137											
SMEK1	55671	broad.mit.edu	37	14	91927912	91927913	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	91927913	TT	-	91927912	7	5	157	1	0	1	0	1	0	0	0	0	14806	1725	60	0	305	0	SMEK1	14	91927912	Frame_Shift_Del	DEL	TT	TCGA-B0-5098-01A-01D-1421-08	10317918	91927912	15421628	531	10138											
HHIPL1	84439	broad.mit.edu	37	14	100129284	100129284	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	100129284	G	A	100129284	3	1	157	1	0	0	0	0	1	0	0	0	7100	1203	42	2	1596	2	HHIPL1	14	100129284	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	8201372	100129284	7220256	532	10139											
AHNAK2	113146	broad.mit.edu	37	14	105421090	105421090	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	105421090	A	G	105421090	3	3	157	1	0	0	0	0	1	0	0	0	415	188	7	3	16693	3	AHNAK2	14	105421090	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	5291806	105421090	1928450	533	10140											
CYFIP1	23191	broad.mit.edu	37	15	22955133	22955133	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	22955133	T	C	22955133	5	2	157	1	0	0	0	0	0	0	1	0	4139	1710	59	3	1581	3	CYFIP1	15	22955133	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08		22955133	79576259	534	10141											
ATP10A	57194	broad.mit.edu	37	15	25966975	25966975	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	25966975	A	G	25966975	2	3	157	1	0	0	0	0	0	0	0	1	1116	40	2	3		3	ATP10A	15	25966975	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3011842	25966975	76564417	535	10142											
DISP2	85455	broad.mit.edu	37	15	40661343	40661343	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	40661343	C	T	40661343	2	4	157	1	0	0	0	0	0	0	0	1	4542	871	31	1		1	DISP2	15	40661343	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	14694368	40661343	61870049	536	10143											
DNAJC17	55192	broad.mit.edu	37	15	41067229	41067231	+	Splice_Site	DEL	CTT	CTT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	41067231	CTT	-	41067229	8	5	157	1	0	1	0	1	0	0	1	0	4638	695	24	0	330	0	DNAJC17	15	41067229	Splice_Site	DEL	CTT	TCGA-B0-5098-01A-01D-1421-08	405886	41067229	61464163	537	10144											
VPS18	57617	broad.mit.edu	37	15	41192359	41192359	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	41192359	T	C	41192359	3	2	157	1	0	0	0	0	1	0	0	0	17206	1580	55	3	1357	3	VPS18	15	41192359	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	125130	41192359	61339033	538	10145											
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42132730	42132730	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	42132730	T	C	42132730	3	2	157	1	0	0	0	0	1	0	0	0	7962	1551	54	3	814	3	JMJD7-PLA2G4B	15	42132730	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	940371	42132730	60398662	539	10146											
PLA2G4D	283748	broad.mit.edu	37	15	42364521	42364521	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	42364521	A	T	42364521	3	4	157	1	0	0	0	0	1	0	0	0	12011	69	3	5	1097	5	PLA2G4D	15	42364521	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	231791	42364521	60166871	540	10147											
ZSCAN29	146050	broad.mit.edu	37	15	43656464	43656464	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	43656464	C	T	43656464	3	4	157	1	0	0	0	0	1	0	0	0	18248	835	29	2	1227	2	ZSCAN29	15	43656464	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1291943	43656464	58874928	541	10148											
SPG11	80208	broad.mit.edu	37	15	44888371	44888371	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	44888371	G	A	44888371	2	1	157	1	0	0	0	0	0	0	0	1	15053	963	34	2		2	SPG11	15	44888371	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1231907	44888371	57643021	542	10149											
CEP152	22995	broad.mit.edu	37	15	49076301	49076301	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	49076301	C	T	49076301	3	4	157	1	0	0	0	0	1	0	0	0	3250	536	19	1	3842	1	CEP152	15	49076301	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	4187930	49076301	53455091	543	10150											
USP50	373509	broad.mit.edu	37	15	50833262	50833262	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	50833262	T	C	50833262	3	2	157	1	0	0	0	0	1	0	0	0	17094	1406	49	3	376	3	USP50	15	50833262	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1756961	50833262	51698130	544	10151											
TNFAIP8L3	388121	broad.mit.edu	37	15	51397273	51397273	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	51397273	C	T	51397273	3	4	157	1	0	0	0	0	1	0	0	0	16291	739	26	2	789	2	TNFAIP8L3	15	51397273	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	564011	51397273	51134119	545	10152											
WDR72	256764	broad.mit.edu	37	15	53907852	53907852	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	53907852	T	C	53907852	3	2	157	1	0	0	0	0	1	0	0	0	17334	1522	53	3	781	3	WDR72	15	53907852	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2510579	53907852	48623540	546	10153											
PYGO1	26108	broad.mit.edu	37	15	55841138	55841138	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	55841138	T	C	55841138	2	2	157	1	0	0	0	0	0	0	0	1	12876	1567	55	3		3	PYGO1	15	55841138	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1933286	55841138	46690254	547	10154											
DENND4A	10260	broad.mit.edu	37	15	65962172	65962172	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	65962172	C	T	65962172	3	4	157	1	0	0	0	0	1	0	0	0	4435	797	28	2	1019	2	DENND4A	15	65962172	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	10121034	65962172	36569220	548	10155											
DIS3L	115752	broad.mit.edu	37	15	66618704	66618704	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	66618704	T	C	66618704	5	2	157	1	0	0	0	0	0	0	1	0	4538	1652	57	3	2249	3	DIS3L	15	66618704	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	656532	66618704	35912688	549	10156											
SNAPC5	10302	broad.mit.edu	37	15	66790065	66790065	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	66790065	A	G	66790065	3	3	157	1	0	0	0	0	1	0	0	0	14851	188	7	3	303	3	SNAPC5	15	66790065	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	171361	66790065	35741327	550	10157											
CORO2B	10391	broad.mit.edu	37	15	69011755	69011755	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	69011755	C	T	69011755	3	4	157	1	0	0	0	0	1	0	0	0	3759	623	22	2	1217	2	CORO2B	15	69011755	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2221690	69011755	33519637	551	10158											
STOML1	9399	broad.mit.edu	37	15	74281026	74281026	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	74281026	C	A	74281026	3	1	157	1	0	0	0	0	1	0	0	0	15325	797	28	4	704	4	STOML1	15	74281026	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	5269271	74281026	28250366	552	10159											
PML	5371	broad.mit.edu	37	15	74315449	74315449	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	74315449	C	T	74315449	3	4	157	1	0	0	0	0	1	0	0	0	12142	768	27	1	893	1	PML	15	74315449	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	34423	74315449	28215943	553	10160											
AGBL1	123624	broad.mit.edu	37	15	86806023	86806023	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	86806023	A	G	86806023	2	3	157	1	0	0	0	0	0	0	0	1	375	11	1	3		3	AGBL1	15	86806023	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	12490574	86806023	15725369	554	10161											
DET1	55070	broad.mit.edu	37	15	89056277	89056277	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	89056277	A	G	89056277	3	3	157	1	0	0	0	0	1	0	0	0	4452	72	3	3	98	3	DET1	15	89056277	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2250254	89056277	13475115	555	10162											
RHCG	51458	broad.mit.edu	37	15	90021181	90021181	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	90021181	C	T	90021181	3	4	157	1	0	0	0	0	1	0	0	0	13339	768	27	1	597	1	RHCG	15	90021181	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	964904	90021181	12510211	556	10163											
FES	2242	broad.mit.edu	37	15	91428282	91428282	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	91428282	T	C	91428282	3	2	157	1	0	0	0	0	1	0	0	0	5827	1609	56	3	9	3	FES	15	91428282	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1407101	91428282	11103110	557	10164											
PDIA2	64714	broad.mit.edu	37	16	336667	336667	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	336667	G	A	336667	3	1	157	1	0	0	0	0	1	0	0	0	11675	1059	37	1	1388	1	PDIA2	16	336667	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08		336667	90018086	558	10165											
TBL3	10607	broad.mit.edu	37	16	2026055	2026055	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	2026055	A	G	2026055	5	3	157	1	0	0	0	0	0	0	1	0	15655	202	7	3	1174	3	TBL3	16	2026055	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1689388	2026055	88328698	559	10166											
SYNGR3	9143	broad.mit.edu	37	16	2043042	2043042	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	2043042	G	A	2043042	3	1	157	1	0	0	0	0	1	0	0	0	15462	971	34	2	673	2	SYNGR3	16	2043042	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	16987	2043042	88311711	560	10167											
PRSS33	260429	broad.mit.edu	37	16	2834653	2834653	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	2834653	T	C	2834653	3	2	157	1	0	0	0	0	1	0	0	0	12633	1580	55	3	11	3	PRSS33	16	2834653	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	791611	2834653	87520100	561	10168											
CLDN6	9074	broad.mit.edu	37	16	3065456	3065456	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	3065456	C	-	3065456	7	5	157	1	0	1	0	1	0	0	0	0	3491	494	18	0	99	0	CLDN6	16	3065456	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	230803	3065456	87289297	562	10169											
THOC6	79228	broad.mit.edu	37	16	3076526	3076526	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	3076526	C	A	3076526	3	1	157	1	0	0	0	0	1	0	0	0	15881	681	24	4	447	4	THOC6	16	3076526	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	11070	3076526	87278227	563	10170											
PDXDC1	23042	broad.mit.edu	37	16	15126717	15126717	+	Splice_Site	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	15126717	G	T	15126717	5	4	157	1	0	0	0	0	0	0	1	0	11703	1014	35	4	1641	4	PDXDC1	16	15126717	Splice_Site	SNP	G	TCGA-B0-5098-01A-01D-1421-08	12050191	15126717	75228036	564	10171											
XYLT1	64131	broad.mit.edu	37	16	17294474	17294474	+	Silent	SNP	G	G	A	rs145318002		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	17294474	G	A	17294474	2	1	157	1	0	0	0	0	0	0	0	1	17475	1103	39	1		1	XYLT1	16	17294474	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2167757	17294474	73060279	565	10172											
IQCK	124152	broad.mit.edu	37	16	19775436	19775436	+	Splice_Site	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	19775436	T	G	19775436	5	3	157	1	0	0	0	0	0	0	1	0	7820	1710	59	5	629	5	IQCK	16	19775436	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2480962	19775436	70579317	566	10173											
IQCK	124152	broad.mit.edu	37	16	19800174	19800174	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	19800174	T	A	19800174	3	1	157	1	0	0	0	0	1	0	0	0	7820	1435	50	5	646	5	IQCK	16	19800174	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	24738	19800174	70554579	567	10174											
GP2	2813	broad.mit.edu	37	16	20327330	20327330	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	20327330	T	C	20327330	2	2	157	1	0	0	0	0	0	0	0	1	6589	1625	57	3		3	GP2	16	20327330	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	527156	20327330	70027423	568	10175											
ACSM3	6296	broad.mit.edu	37	16	20796371	20796371	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	20796371	A	-	20796371	7	5	157	1	0	1	0	1	0	0	0	0	185	246	9	0	1111	0	ACSM3	16	20796371	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	469041	20796371	69558382	569	10176											
DCUN1D3	123879	broad.mit.edu	37	16	20871211	20871211	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	20871211	A	G	20871211	2	3	157	1	0	0	0	0	0	0	0	1	4317	59	3	3		3	DCUN1D3	16	20871211	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	74840	20871211	69483542	570	10177											
CRYM	1428	broad.mit.edu	37	16	21272583	21272583	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	21272583	T	C	21272583	3	2	157	1	0	0	0	0	1	0	0	0	3923	1609	56	3	80	3	CRYM	16	21272583	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	401372	21272583	69082170	571	10178											
SLC5A11	115584	broad.mit.edu	37	16	24920260	24920260	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	24920260	A	T	24920260	3	4	157	1	0	0	0	0	1	0	0	0	14676	275	10	5	1543	5	SLC5A11	16	24920260	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3647677	24920260	65434493	572	10179											
ZNF771	51333	broad.mit.edu	37	16	30419389	30419389	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	30419389	G	A	30419389	2	1	157	1	0	0	0	0	0	0	0	1	18156	962	34	2		2	ZNF771	16	30419389	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	5499129	30419389	59935364	573	10180											
ITGAX	3687	broad.mit.edu	37	16	31374511	31374511	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	31374511	T	C	31374511	3	2	157	1	0	0	0	0	1	0	0	0	7896	1725	60	3	1580	3	ITGAX	16	31374511	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	955122	31374511	58980242	574	10181											
N4BP1	9683	broad.mit.edu	37	16	48595100	48595100	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	48595100	G	T	48595100	3	4	157	1	0	0	0	0	1	0	0	0	10116	1377	48	4	1260	4	N4BP1	16	48595100	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	17220589	48595100	41759653	575	10182											
ADCY7	113	broad.mit.edu	37	16	50328621	50328621	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	50328621	G	C	50328621	3	2	157	1	0	0	0	0	1	0	0	0	299	1261	44	4	929	4	ADCY7	16	50328621	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1733521	50328621	40026132	576	10183											
FTO	79068	broad.mit.edu	37	16	53922839	53922839	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	53922839	A	G	53922839	2	3	157	1	0	0	0	0	0	0	0	1	6093	146	6	3		3	FTO	16	53922839	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	3594218	53922839	36431914	577	10184											
CES1	1066	broad.mit.edu	37	16	55857583	55857583	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	55857583	T	A	55857583	3	1	157	1	0	0	0	0	1	0	0	0	3271	1435	50	5	1332	5	CES1	16	55857583	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1934744	55857583	34497170	578	10185											
GNAO1	2775	broad.mit.edu	37	16	56377829	56377829	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	56377829	C	T	56377829	2	4	157	1	0	0	0	0	0	0	0	1	6515	874	31	1		1	GNAO1	16	56377829	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	520246	56377829	33976924	579	10186											
NLRC5	84166	broad.mit.edu	37	16	57060873	57060873	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	57060873	C	A	57060873	3	1	157	1	0	0	0	0	1	0	0	0	10477	623	22	4	2032	4	NLRC5	16	57060873	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	683044	57060873	33293880	580	10187											
ZNF319	57567	broad.mit.edu	37	16	58031166	58031166	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	58031166	C	T	58031166	3	4	157	1	0	0	0	0	1	0	0	0	17849	768	27	1	748	1	ZNF319	16	58031166	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	970293	58031166	32323587	581	10188											
SLC7A6	9057	broad.mit.edu	37	16	68321684	68321685	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	68321685	-	G	68321684	7	5	157	1	0	1	1	0	0	0	0	0	14714	1696	59	0	565	0	SLC7A6	16	68321684	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	10290518	68321684	22033069	582	10189											
WWP2	11060	broad.mit.edu	37	16	69832614	69832614	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	69832614	C	T	69832614	3	4	157	1	0	0	0	0	1	0	0	0	17428	884	31	1	106	1	WWP2	16	69832614	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1510930	69832614	20522139	583	10190											
AP1G1	164	broad.mit.edu	37	16	71767002	71767002	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	71767002	G	T	71767002	3	4	157	1	0	0	0	0	1	0	0	0	732	933	33	4	44	4	AP1G1	16	71767002	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1934388	71767002	18587751	584	10191											
PMFBP1	83449	broad.mit.edu	37	16	72184607	72184607	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	72184607	T	C	72184607	3	2	157	1	0	0	0	0	1	0	0	0	12141	1725	60	3	2615	3	PMFBP1	16	72184607	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	417605	72184607	18170146	585	10192											
ZFHX3	463	broad.mit.edu	37	16	72845484	72845484	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	72845484	T	C	72845484	3	2	157	1	0	0	0	0	1	0	0	0	17646	1464	51	3	7271	3	ZFHX3	16	72845484	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	660877	72845484	17509269	586	10193											
ZFHX3	463	broad.mit.edu	37	16	72993580	72993580	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	72993580	G	A	72993580	2	1	157	1	0	0	0	0	0	0	0	1	17646	1074	38	1		1	ZFHX3	16	72993580	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	148096	72993580	17361173	587	10194											
ADAMTS18	170692	broad.mit.edu	37	16	77331255	77331255	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	77331255	G	A	77331255	3	1	157	1	0	0	0	0	1	0	0	0	263	1294	45	2	957	2	ADAMTS18	16	77331255	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4337675	77331255	13023498	588	10195											
ADAMTS18	170692	broad.mit.edu	37	16	77331297	77331297	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	77331297	T	C	77331297	3	2	157	1	0	0	0	0	1	0	0	0	263	1609	56	3	999	3	ADAMTS18	16	77331297	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	42	77331297	13023456	589	10196											
NECAB2	54550	broad.mit.edu	37	16	84031849	84031849	+	Missense_Mutation	SNP	G	G	A	rs147666898		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	84031849	G	A	84031849	3	1	157	1	0	0	0	0	1	0	0	0	10312	1059	37	1	927	1	NECAB2	16	84031849	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	6700552	84031849	6322904	590	10197											
ADAD2	161931	broad.mit.edu	37	16	84230327	84230327	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	84230327	T	C	84230327	3	2	157	1	0	0	0	0	1	0	0	0	232	1696	59	3	1885	3	ADAD2	16	84230327	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	198478	84230327	6124426	591	10198											
ATP2C2	9914	broad.mit.edu	37	16	84495688	84495688	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	84495688	T	C	84495688	3	2	157	1	0	0	0	0	1	0	0	0	1144	1435	50	3	2777	3	ATP2C2	16	84495688	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	265361	84495688	5859065	592	10199											
ZDHHC7	55625	broad.mit.edu	37	16	85010045	85010045	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	85010045	C	-	85010045	7	5	157	1	0	1	0	1	0	0	0	0	17632	726	26	0	99	0	ZDHHC7	16	85010045	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	514357	85010045	5344708	593	10200											
PRDM7	11105	broad.mit.edu	37	16	90142264	90142264	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	90142264	C	G	90142264	3	3	157	1	0	0	0	0	1	0	0	0	12471	922	32	4	1463	4	PRDM7	16	90142264	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	5132219	90142264	212489	594	10201											
PRPF8	10594	broad.mit.edu	37	17	1557299	1557299	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	1557299	G	A	1557299	3	1	157	1	0	0	0	0	1	0	0	0	12585	1319	46	2	1032	2	PRPF8	17	1557299	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08		1557299	79637911	595	10202											
OR3A1	4994	broad.mit.edu	37	17	3195465	3195465	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	3195465	G	T	3195465	3	4	157	1	0	0	0	0	1	0	0	0	11044	1116	39	4	539	4	OR3A1	17	3195465	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1638166	3195465	77999745	596	10203											
CAMKK1	84254	broad.mit.edu	37	17	3775908	3775908	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	3775908	T	C	3775908	3	2	157	1	0	0	0	0	1	0	0	0	2608	1667	58	3	477	3	CAMKK1	17	3775908	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	580443	3775908	77419302	597	10204											
SPNS2	124976	broad.mit.edu	37	17	4434362	4434362	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	4434362	T	C	4434362	3	2	157	1	0	0	0	0	1	0	0	0	15087	1493	52	3	758	3	SPNS2	17	4434362	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	658454	4434362	76760848	598	10205											
RABEP1	9135	broad.mit.edu	37	17	5280457	5280457	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	5280457	T	C	5280457	3	2	157	1	0	0	0	0	1	0	0	0	12974	1696	59	3	2126	3	RABEP1	17	5280457	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	846095	5280457	75914753	599	10206											
ZBTB4	57659	broad.mit.edu	37	17	7365705	7365705	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	7365705	T	C	7365705	3	2	157	1	0	0	0	0	1	0	0	0	17553	1580	55	3	449	3	ZBTB4	17	7365705	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2085248	7365705	73829505	600	10207											
TP53	7157	broad.mit.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	7578212	G	A	7578212	4	1	157	1	0	0	0	0	0	1	0	0	16393	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	212507	7578212	73616998	601	10208											
DNAH2	146754	broad.mit.edu	37	17	7728027	7728027	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	7728027	G	A	7728027	3	1	157	1	0	0	0	0	1	0	0	0	4604	1290	45	2	12137	2	DNAH2	17	7728027	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	149815	7728027	73467183	602	10209											
KDM6B	23135	broad.mit.edu	37	17	7748975	7748975	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	7748975	C	-	7748975	7	5	157	1	0	1	0	1	0	0	0	0	8145	855	30	0	105	0	KDM6B	17	7748975	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	20948	7748975	73446235	603	10210											
TRAPPC1	58485	broad.mit.edu	37	17	7834023	7834023	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	7834023	G	A	7834023	2	1	157	1	0	0	0	0	0	0	0	1	16468	1219	43	2		2	TRAPPC1	17	7834023	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	85048	7834023	73361187	604	10211											
MYH10	4628	broad.mit.edu	37	17	8409751	8409751	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	8409751	G	C	8409751	3	2	157	1	0	0	0	0	1	0	0	0	10037	1029	36	4	2820	4	MYH10	17	8409751	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	575728	8409751	72785459	605	10212											
MYH10	4628	broad.mit.edu	37	17	8421992	8421992	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	8421992	T	G	8421992	3	3	157	1	0	0	0	0	1	0	0	0	10037	1464	51	5	3654	5	MYH10	17	8421992	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	12241	8421992	72773218	606	10213											
USP43	124739	broad.mit.edu	37	17	9583621	9583621	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	9583621	C	T	9583621	3	4	157	1	0	0	0	0	1	0	0	0	17086	710	25	2	1065	2	USP43	17	9583621	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1161629	9583621	71611589	607	10214											
USP43	124739	broad.mit.edu	37	17	9631817	9631817	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	9631817	T	C	9631817	3	2	157	1	0	0	0	0	1	0	0	0	17086	1464	51	3	2940	3	USP43	17	9631817	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	48196	9631817	71563393	608	10215											
MYH8	4626	broad.mit.edu	37	17	10299971	10299971	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	10299971	T	C	10299971	3	2	157	1	0	0	0	0	1	0	0	0	10048	1551	54	3	1422	3	MYH8	17	10299971	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	668154	10299971	70895239	609	10216											
MYH8	4626	broad.mit.edu	37	17	10304593	10304593	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	10304593	T	C	10304593	5	2	157	1	0	0	0	0	0	0	1	0	10048	1449	50	3	2774	3	MYH8	17	10304593	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	4622	10304593	70890617	610	10217											
MYH4	4622	broad.mit.edu	37	17	10348583	10348583	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	10348583	C	A	10348583	4	1	157	1	0	0	0	0	0	1	0	0	10044	922	32	4	573	4	MYH4	17	10348583	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	43990	10348583	70846627	611	10218											
DNAH9	1770	broad.mit.edu	37	17	11550505	11550505	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	11550505	T	G	11550505	3	3	157	1	0	0	0	0	1	0	0	0	4610	1841	64	5	2133	5	DNAH9	17	11550505	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1201922	11550505	69644705	612	10219											
MYOCD	93649	broad.mit.edu	37	17	12626277	12626278	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	12626278	-	A	12626277	7	5	157	1	0	1	1	0	0	0	0	0	10094	1175	41	0	385	0	MYOCD	17	12626277	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	1075772	12626277	68568933	613	10220											
ELAC2	60528	broad.mit.edu	37	17	12905673	12905673	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	12905673	C	T	12905673	3	4	157	1	0	0	0	0	1	0	0	0	5049	869	30	2	1302	2	ELAC2	17	12905673	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	279396	12905673	68289537	614	10221											
PEMT	10400	broad.mit.edu	37	17	17425656	17425656	+	Silent	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	17425656	G	T	17425656	2	4	157	1	0	0	0	0	0	0	0	1	11733	987	35	4		4	PEMT	17	17425656	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4519983	17425656	63769554	615	10222											
MYO15A	51168	broad.mit.edu	37	17	18059537	18059537	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	18059537	C	T	18059537	3	4	157	1	0	0	0	0	1	0	0	0	10070	739	26	2	8670	2	MYO15A	17	18059537	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	633881	18059537	63135673	616	10223											
SMCR8	140775	broad.mit.edu	37	17	18219509	18219509	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	18219509	G	A	18219509	3	1	157	1	0	0	0	0	1	0	0	0	14805	1145	40	1	408	1	SMCR8	17	18219509	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	159972	18219509	62975701	617	10224											
SLC5A10	125206	broad.mit.edu	37	17	18916767	18916767	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	18916767	G	A	18916767	3	1	157	1	0	0	0	0	1	0	0	0	14675	1116	39	1	1113	1	SLC5A10	17	18916767	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	697258	18916767	62278443	618	10225											
MFAP4	4239	broad.mit.edu	37	17	19287984	19287984	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	19287984	T	C	19287984	3	2	157	1	0	0	0	0	1	0	0	0	9524	1638	57	3	212	3	MFAP4	17	19287984	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	371217	19287984	61907226	619	10226											
TMEM97	27346	broad.mit.edu	37	17	26653714	26653714	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	26653714	C	T	26653714	2	4	157	1	0	0	0	0	0	0	0	1	16236	610	22	2		2	TMEM97	17	26653714	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	7365730	26653714	54541496	620	10227											
NF1	4763	broad.mit.edu	37	17	29556200	29556200	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	29556200	G	A	29556200	3	1	157	1	0	0	0	0	1	0	0	0	10363	971	34	2	2710	2	NF1	17	29556200	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2902486	29556200	51639010	621	10228											
EVI2A	2123	broad.mit.edu	37	17	29647410	29647410	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	29647410	C	T	29647410	3	4	157	1	0	0	0	0	1	0	0	0	5289	739	26	2	747	2	EVI2A	17	29647410	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	91210	29647410	51547800	622	10229											
NF1	4763	broad.mit.edu	37	17	29664535	29664536	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	29664536	GA	-	29664535	7	5	157	1	0	1	0	1	0	0	0	0	10363	1291	45	0	6808	0	NF1	17	29664535	Frame_Shift_Del	DEL	GA	TCGA-B0-5098-01A-01D-1421-08	17125	29664535	51530675	623	10230											
PSMD11	5717	broad.mit.edu	37	17	30800953	30800953	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	30800953	A	G	30800953	3	3	157	1	0	0	0	0	1	0	0	0	12704	217	8	3	804	3	PSMD11	17	30800953	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1136418	30800953	50394257	624	10231											
UNC45B	146862	broad.mit.edu	37	17	33510469	33510469	+	Silent	SNP	C	C	T	rs74403538	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	33510469	C	T	33510469	2	4	157	1	0	0	0	0	0	0	0	1	17001	535	19	1		1	UNC45B	17	33510469	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2709516	33510469	47684741	625	10232											
RASL10B	91608	broad.mit.edu	37	17	34068079	34068079	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	34068079	A	G	34068079	3	3	157	1	0	0	0	0	1	0	0	0	13093	217	8	3	377	3	RASL10B	17	34068079	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	557610	34068079	47127131	626	10233											
TBC1D3B	414059	broad.mit.edu	37	17	34493433	34493433	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	34493433	G	A	34493433	3	1	157	1	0	0	0	0	1	0	0	0	15632	1294	45	2	61	2	TBC1D3B	17	34493433	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	425354	34493433	46701777	627	10234											
SRCIN1	80725	broad.mit.edu	37	17	36705381	36705381	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	36705381	G	T	36705381	3	4	157	1	0	0	0	0	1	0	0	0	15148	1116	39	4	539	4	SRCIN1	17	36705381	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2211948	36705381	44489829	628	10235											
PIP4K2B	8396	broad.mit.edu	37	17	36927421	36927421	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	36927421	G	A	36927421	2	1	157	1	0	0	0	0	0	0	0	1	11944	1136	40	1		1	PIP4K2B	17	36927421	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	222040	36927421	44267789	629	10236											
MED1	5469	broad.mit.edu	37	17	37565271	37565271	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	37565271	G	A	37565271	3	1	157	1	0	0	0	0	1	0	0	0	9432	1000	35	2	1546	2	MED1	17	37565271	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	637850	37565271	43629939	630	10237											
CDK12	51755	broad.mit.edu	37	17	37619372	37619372	+	Splice_Site	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	37619372	T	C	37619372	5	2	157	1	0	0	0	0	0	0	1	0	3130	1710	59	3	1050	3	CDK12	17	37619372	Splice_Site	SNP	T	TCGA-B0-5098-01A-01D-1421-08	54101	37619372	43575838	631	10238											
ERBB2	2064	broad.mit.edu	37	17	37882078	37882078	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	37882078	C	A	37882078	2	1	157	1	0	0	0	0	0	0	0	1	5208	581	21	4		4	ERBB2	17	37882078	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	262706	37882078	43313132	632	10239											
ACLY	47	broad.mit.edu	37	17	40049293	40049293	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	40049293	G	T	40049293	3	4	157	1	0	0	0	0	1	0	0	0	143	1232	43	4	1771	4	ACLY	17	40049293	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2167215	40049293	41145917	633	10240											
DHX58	79132	broad.mit.edu	37	17	40263345	40263345	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	40263345	G	A	40263345	2	1	157	1	0	0	0	0	0	0	0	1	4516	1194	42	2		2	DHX58	17	40263345	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	214052	40263345	40931865	634	10241											
DHX8	1659	broad.mit.edu	37	17	41582145	41582145	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	41582145	G	A	41582145	2	1	157	1	0	0	0	0	0	0	0	1	4517	962	34	2		2	DHX8	17	41582145	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1318800	41582145	39613065	635	10242											
ACBD4	79777	broad.mit.edu	37	17	43214792	43214793	+	Frame_Shift_Ins	INS	-	-	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	43214793	-	C	43214792	7	5	157	1	0	1	1	0	0	0	0	0	124	1551	54	0	491	0	ACBD4	17	43214792	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	1632647	43214792	37980418	636	10243											
NPEPPS	9520	broad.mit.edu	37	17	45669320	45669320	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	45669320	A	G	45669320	5	3	157	1	0	0	0	0	0	0	1	0	10582	202	7	3	1301	3	NPEPPS	17	45669320	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2454528	45669320	35525890	637	10244											
KPNB1	3837	broad.mit.edu	37	17	45757396	45757396	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	45757396	G	A	45757396	3	1	157	1	0	0	0	0	1	0	0	0	8442	1319	46	2	2442	2	KPNB1	17	45757396	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	88076	45757396	35437814	638	10245											
PHB	5245	broad.mit.edu	37	17	47484173	47484173	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	47484173	G	A	47484173	3	1	157	1	0	0	0	0	1	0	0	0	11821	1203	42	2	272	2	PHB	17	47484173	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1726777	47484173	33711037	639	10246											
BZRAP1	9256	broad.mit.edu	37	17	56388049	56388049	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	56388049	C	A	56388049	3	1	157	1	0	0	0	0	1	0	0	0	1579	623	22	4	2098	4	BZRAP1	17	56388049	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	8903876	56388049	24807161	640	10247											
RNF43	54894	broad.mit.edu	37	17	56492887	56492887	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	56492887	T	C	56492887	3	2	157	1	0	0	0	0	1	0	0	0	13508	1435	50	3	2335	3	RNF43	17	56492887	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	104838	56492887	24702323	641	10248											
RPS6KB1	6198	broad.mit.edu	37	17	58012656	58012656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	58012656	A	-	58012656	7	5	157	1	0	1	0	1	0	0	0	0	13669	363	13	0	1011	0	RPS6KB1	17	58012656	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	1519769	58012656	23182554	642	10249											
HEATR6	63897	broad.mit.edu	37	17	58121377	58121378	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	58121378	CT	-	58121377	7	5	157	1	0	1	0	1	0	0	0	0	7040	796	28	0	456	0	HEATR6	17	58121377	Frame_Shift_Del	DEL	CT	TCGA-B0-5098-01A-01D-1421-08	108721	58121377	23073833	643	10250											
INTS2	57508	broad.mit.edu	37	17	59999160	59999160	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	59999160	A	-	59999160	7	5	157	1	0	1	0	1	0	0	0	0	7785	246	9	0	3217	0	INTS2	17	59999160	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	1877783	59999160	21196050	644	10251											
MAP3K3	4215	broad.mit.edu	37	17	61766161	61766161	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	61766161	A	G	61766161	3	3	157	1	0	0	0	0	1	0	0	0	9258	188	7	3	926	3	MAP3K3	17	61766161	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1767001	61766161	19429049	645	10252											
STRADA	92335	broad.mit.edu	37	17	61781804	61781804	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	61781804	G	-	61781804	7	5	157	1	0	1	0	1	0	0	0	0	15336	1115	39	0	368	0	STRADA	17	61781804	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	15643	61781804	19413406	646	10253											
FTSJ3	117246	broad.mit.edu	37	17	61898462	61898462	+	Missense_Mutation	SNP	G	G	A	rs145334305		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	61898462	G	A	61898462	3	1	157	1	0	0	0	0	1	0	0	0	6096	1116	39	1	663	1	FTSJ3	17	61898462	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	116658	61898462	19296748	647	10254											
POLG2	11232	broad.mit.edu	37	17	62487033	62487033	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	62487033	G	A	62487033	2	1	157	1	0	0	0	0	0	0	0	1	12208	1190	42	2		2	POLG2	17	62487033	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	588571	62487033	18708177	648	10255											
ARSG	22901	broad.mit.edu	37	17	66397567	66397567	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	66397567	C	T	66397567	3	4	157	1	0	0	0	0	1	0	0	0	992	768	27	1	1317	1	ARSG	17	66397567	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3910534	66397567	14797643	649	10256											
UBE2O	63893	broad.mit.edu	37	17	74394955	74394957	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	74394957	GTT	-	74394955	7	5	157	1	0	1	0	1	0	0	0	0	16880	1136	40	0	2168	0	UBE2O	17	74394955	In_Frame_Del	DEL	GTT	TCGA-B0-5098-01A-01D-1421-08	7997388	74394955	6800255	650	10257											
SEC14L1	6397	broad.mit.edu	37	17	75190814	75190814	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	75190814	T	C	75190814	3	2	157	1	0	0	0	0	1	0	0	0	13994	1841	64	3	548	3	SEC14L1	17	75190814	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	795859	75190814	6004396	651	10258											
SOCS3	9021	broad.mit.edu	37	17	76354878	76354878	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	76354878	C	-	76354878	7	5	157	1	0	1	0	1	0	0	0	0	14928	739	26	0	382	0	SOCS3	17	76354878	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	1164064	76354878	4840332	652	10259											
PGS1	9489	broad.mit.edu	37	17	76388741	76388741	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	76388741	A	G	76388741	3	3	157	1	0	0	0	0	1	0	0	0	11815	217	8	3	334	3	PGS1	17	76388741	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	33863	76388741	4806469	653	10260											
DNAH17	8632	broad.mit.edu	37	17	76430163	76430163	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	76430163	C	A	76430163	3	1	157	1	0	0	0	0	1	0	0	0	4603	855	30	4	1244	4	DNAH17	17	76430163	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	41422	76430163	4765047	654	10261											
USP36	57602	broad.mit.edu	37	17	76794524	76794524	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	76794524	G	A	76794524	3	1	157	1	0	0	0	0	1	0	0	0	17079	1203	42	2	25	2	USP36	17	76794524	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	364361	76794524	4400686	655	10262											
ENPP7	339221	broad.mit.edu	37	17	77710966	77710966	+	Missense_Mutation	SNP	G	G	A	rs140556423		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	77710966	G	A	77710966	3	1	157	1	0	0	0	0	1	0	0	0	5137	1145	40	1	1167	1	ENPP7	17	77710966	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	916442	77710966	3484244	656	10263											
EIF4A3	9775	broad.mit.edu	37	17	78113889	78113889	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	78113889	A	G	78113889	2	3	157	1	0	0	0	0	0	0	0	1	5028	126	5	3		3	EIF4A3	17	78113889	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	402923	78113889	3081321	657	10264											
RPTOR	57521	broad.mit.edu	37	17	78704364	78704364	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	78704364	A	C	78704364	3	2	157	1	0	0	0	0	1	0	0	0	13678	391	14	5	530	5	RPTOR	17	78704364	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	590475	78704364	2490846	658	10265											
BAHCC1	57597	broad.mit.edu	37	17	79409727	79409727	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	79409727	A	T	79409727	3	4	157	1	0	0	0	0	1	0	0	0	1296	304	11	5	1201	5	BAHCC1	17	79409727	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	705363	79409727	1785483	659	10266											
FN3KRP	79672	broad.mit.edu	37	17	80684911	80684911	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	80684911	G	A	80684911	3	1	157	1	0	0	0	0	1	0	0	0	5971	1203	42	2	816	2	FN3KRP	17	80684911	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1275184	80684911	510299	660	10267											
ZNF750	79755	broad.mit.edu	37	17	80789303	80789303	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	80789303	C	T	80789303	3	4	157	1	0	0	0	0	1	0	0	0	18144	884	31	1	1151	1	ZNF750	17	80789303	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	104392	80789303	405907	661	10268											
ENOSF1	55556	broad.mit.edu	37	18	697349	697349	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	697349	C	T	697349	3	4	157	1	0	0	0	0	1	0	0	0	5127	478	17	2	1187	2	ENOSF1	18	697349	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08		697349	77379899	662	10269											
MYOM1	8736	broad.mit.edu	37	18	3085102	3085102	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	3085102	T	G	3085102	3	3	157	1	0	0	0	0	1	0	0	0	10098	1783	62	5	809	5	MYOM1	18	3085102	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2387753	3085102	74992146	663	10270											
LAMA1	284217	broad.mit.edu	37	18	6949184	6949184	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	6949184	C	A	6949184	2	1	157	1	0	0	0	0	0	0	0	1	8612	581	21	4		4	LAMA1	18	6949184	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3864082	6949184	71128064	664	10271											
CTAGE1	64693	broad.mit.edu	37	18	19996082	19996082	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	19996082	C	T	19996082	3	4	157	1	0	0	0	0	1	0	0	0	3994	739	26	2	548	2	CTAGE1	18	19996082	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	13046898	19996082	58081166	665	10272											
TTC39C	125488	broad.mit.edu	37	18	21710336	21710336	+	Silent	SNP	G	G	A	rs149403354	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	21710336	G	A	21710336	2	1	157	1	0	0	0	0	0	0	0	1	16721	1132	40	1		1	TTC39C	18	21710336	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1714254	21710336	56366912	666	10273											
DSC3	1825	broad.mit.edu	37	18	28598103	28598103	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	28598103	A	G	28598103	2	3	157	1	0	0	0	0	0	0	0	1	4769	214	8	3		3	DSC3	18	28598103	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	6887767	28598103	49479145	667	10274											
DSG3	1830	broad.mit.edu	37	18	29046491	29046491	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	29046491	A	G	29046491	5	3	157	1	0	0	0	0	0	0	1	0	4780	202	7	3	1452	3	DSG3	18	29046491	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	448388	29046491	49030757	668	10275											
PIK3C3	5289	broad.mit.edu	37	18	39609379	39609379	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	39609379	C	T	39609379	3	4	157	1	0	0	0	0	1	0	0	0	11919	536	19	1	1739	1	PIK3C3	18	39609379	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	10562888	39609379	38467869	669	10276											
CXXC1	30827	broad.mit.edu	37	18	47812979	47812979	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	47812979	A	G	47812979	2	3	157	1	0	0	0	0	0	0	0	1	4099	214	8	3		3	CXXC1	18	47812979	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	8203600	47812979	30264269	670	10277											
PIGN	23556	broad.mit.edu	37	18	59814310	59814310	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	59814310	T	-	59814310	7	5	157	1	0	1	0	1	0	0	0	0	11900	1606	56	0	2188	0	PIGN	18	59814310	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	12001331	59814310	18262938	671	10278											
PHLPP1	23239	broad.mit.edu	37	18	60612366	60612366	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	60612366	T	C	60612366	2	2	157	1	0	0	0	0	0	0	0	1	11861	1799	63	3		3	PHLPP1	18	60612366	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	798056	60612366	17464882	672	10279											
SERPINB13	5275	broad.mit.edu	37	18	61256926	61256926	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	61256926	A	T	61256926	3	4	157	1	0	0	0	0	1	0	0	0	14113	101	4	5	208	5	SERPINB13	18	61256926	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	644560	61256926	16820322	673	10280											
ZNF236	7776	broad.mit.edu	37	18	74587548	74587548	+	Silent	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	74587548	C	A	74587548	2	1	157	1	0	0	0	0	0	0	0	1	17801	668	24	4		4	ZNF236	18	74587548	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	13330622	74587548	3489700	674	10281											
NFATC1	4772	broad.mit.edu	37	18	77193724	77193724	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	77193724	C	A	77193724	3	1	157	1	0	0	0	0	1	0	0	0	10368	478	17	4	1474	4	NFATC1	18	77193724	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2606176	77193724	883524	675	10282											
ADNP2	22850	broad.mit.edu	37	18	77895513	77895513	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	77895513	A	-	77895513	7	5	157	1	0	1	0	1	0	0	0	0	324	349	13	0	2227	0	ADNP2	18	77895513	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	701789	77895513	181735	676	10283											
ELANE	1991	broad.mit.edu	37	19	852901	852901	+	Silent	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	852901	G	T	852901	2	4	157	1	0	0	0	0	0	0	0	1	5050	1335	47	4		4	ELANE	19	852901	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08		852901	58276082	677	10284											
CNN2	1265	broad.mit.edu	37	19	1037669	1037669	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	1037669	A	G	1037669	3	3	157	1	0	0	0	0	1	0	0	0	3612	131	5	3	726	3	CNN2	19	1037669	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	184768	1037669	58091314	678	10285											
C19orf35	374872	broad.mit.edu	37	19	2275750	2275750	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	2275750	G	A	2275750	2	1	157	1	0	0	0	0	0	0	0	1	1922	962	34	2		2	C19orf35	19	2275750	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1238081	2275750	56853233	679	10286											
ZNF57	126295	broad.mit.edu	37	19	2918270	2918270	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	2918270	A	G	2918270	3	3	157	1	0	0	0	0	1	0	0	0	18013	188	7	3	1665	3	ZNF57	19	2918270	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	642520	2918270	56210713	680	10287											
MCOLN1	57192	broad.mit.edu	37	19	7595355	7595355	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	7595355	G	A	7595355	3	1	157	1	0	0	0	0	1	0	0	0	9402	1087	38	1	1589	1	MCOLN1	19	7595355	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4677085	7595355	51533628	681	10288											
MUC16	94025	broad.mit.edu	37	19	9059693	9059701	+	In_Frame_Del	DEL	TGTGGCCTT	TGTGGCCTT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	9059701	TGTGGCCTT	-	9059693	7	5	157	1	0	1	0	1	0	0	0	0	9980	1451	51	0	16098	0	MUC16	19	9059693	In_Frame_Del	DEL	TGTGGCCTT	TCGA-B0-5098-01A-01D-1421-08	1464338	9059693	50069290	682	10289											
ZNF846	162993	broad.mit.edu	37	19	9868821	9868821	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	9868821	A	G	9868821	3	3	157	1	0	0	0	0	1	0	0	0	18204	391	14	3	673	3	ZNF846	19	9868821	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	809128	9868821	49260162	683	10290											
ILF3	3609	broad.mit.edu	37	19	10787852	10787852	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	10787852	A	G	10787852	3	3	157	1	0	0	0	0	1	0	0	0	7719	275	10	3	439	3	ILF3	19	10787852	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	919031	10787852	48341131	684	10291											
SMARCA4	6597	broad.mit.edu	37	19	11143964	11143964	+	Splice_Site	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	11143964	A	G	11143964	5	3	157	1	0	0	0	0	0	0	1	0	14783	202	7	3	3643	3	SMARCA4	19	11143964	Splice_Site	SNP	A	TCGA-B0-5098-01A-01D-1421-08	356112	11143964	47985019	685	10292											
ZNF433	163059	broad.mit.edu	37	19	12126007	12126007	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	12126007	C	A	12126007	4	1	157	1	0	0	0	0	0	1	0	0	17919	922	32	4	350	4	ZNF433	19	12126007	Nonsense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	982043	12126007	47002976	686	10293											
TRMT1	55621	broad.mit.edu	37	19	13220782	13220782	+	Silent	SNP	G	G	A	rs139341662	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	13220782	G	A	13220782	2	1	157	1	0	0	0	0	0	0	0	1	16573	1079	38	1		1	TRMT1	19	13220782	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1094775	13220782	45908201	687	10294											
DDA1	79016	broad.mit.edu	37	19	17430418	17430418	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	17430418	C	T	17430418	3	4	157	1	0	0	0	0	1	0	0	0	4322	652	23	1	280	1	DDA1	19	17430418	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	4209636	17430418	41698565	688	10295											
PDE4C	5143	broad.mit.edu	37	19	18329753	18329753	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	18329753	A	-	18329753	7	5	157	1	0	1	0	1	0	0	0	0	11648	243	9	0	1104	0	PDE4C	19	18329753	Frame_Shift_Del	DEL	A	TCGA-B0-5098-01A-01D-1421-08	899335	18329753	40799230	689	10296											
GATAD2A	54815	broad.mit.edu	37	19	19609378	19609378	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	19609378	G	A	19609378	3	1	157	1	0	0	0	0	1	0	0	0	6267	1203	42	2	1077	2	GATAD2A	19	19609378	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1279625	19609378	39519605	690	10297											
ZNF98	148198	broad.mit.edu	37	19	22574543	22574543	+	Silent	SNP	A	A	G	rs74169607		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	22574543	A	G	22574543	2	3	157	1	0	0	0	0	0	0	0	1	18215	59	3	3		3	ZNF98	19	22574543	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2965165	22574543	36554440	691	10298											
GAPDHS	26330	broad.mit.edu	37	19	36029483	36029483	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	36029483	A	G	36029483	3	3	157	1	0	0	0	0	1	0	0	0	6244	391	14	3	361	3	GAPDHS	19	36029483	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	13454940	36029483	23099500	692	10299											
ATP4A	495	broad.mit.edu	37	19	36047924	36047924	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	36047924	A	G	36047924	3	3	157	1	0	0	0	0	1	0	0	0	1145	217	8	3	1391	3	ATP4A	19	36047924	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	18441	36047924	23081059	693	10300											
RBM42	79171	broad.mit.edu	37	19	36128233	36128233	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	36128233	C	T	36128233	3	4	157	1	0	0	0	0	1	0	0	0	13149	768	27	1	1343	1	RBM42	19	36128233	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	80309	36128233	23000750	694	10301											
CLIP3	25999	broad.mit.edu	37	19	36509856	36509856	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	36509856	C	T	36509856	3	4	157	1	0	0	0	0	1	0	0	0	3536	652	23	1	540	1	CLIP3	19	36509856	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	381623	36509856	22619127	695	10302											
ZFP82	284406	broad.mit.edu	37	19	36883652	36883655	+	Frame_Shift_Del	DEL	TACA	TACA	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	36883655	TACA	-	36883652	7	5	157	1	0	1	0	1	0	0	0	0	17665	1741	61	0	12	0	ZFP82	19	36883652	Frame_Shift_Del	DEL	TACA	TCGA-B0-5098-01A-01D-1421-08	373796	36883652	22245331	696	10303											
CATSPERG	57828	broad.mit.edu	37	19	38853150	38853150	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	38853150	T	C	38853150	2	2	157	1	0	0	0	0	0	0	0	1	2694	1567	55	3		3	CATSPERG	19	38853150	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1969498	38853150	20275833	697	10304											
PLEKHG2	64857	broad.mit.edu	37	19	39914446	39914446	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	39914446	C	-	39914446	7	5	157	1	0	1	0	1	0	0	0	0	12076	842	30	0	2743	0	PLEKHG2	19	39914446	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	1061296	39914446	19214537	698	10305											
SPTBN4	57731	broad.mit.edu	37	19	41029412	41029412	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	41029412	C	T	41029412	2	4	157	1	0	0	0	0	0	0	0	1	15133	506	18	2		2	SPTBN4	19	41029412	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1114966	41029412	18099571	699	10306											
EGLN2	112398	broad.mit.edu	37	19	41307235	41307235	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	41307235	T	G	41307235	3	3	157	1	0	0	0	0	1	0	0	0	4971	1493	52	5	760	5	EGLN2	19	41307235	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	277823	41307235	17821748	700	10307											
ARHGEF1	9138	broad.mit.edu	37	19	42408499	42408499	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	42408499	C	T	42408499	3	4	157	1	0	0	0	0	1	0	0	0	893	759	27	1	2256	1	ARHGEF1	19	42408499	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1101264	42408499	16720484	701	10308											
ZNF221	7638	broad.mit.edu	37	19	44471168	44471168	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	44471168	C	A	44471168	3	1	157	1	0	0	0	0	1	0	0	0	17787	681	24	4	1528	4	ZNF221	19	44471168	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2062669	44471168	14657815	702	10309											
ZNF234	10780	broad.mit.edu	37	19	44661005	44661005	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	44661005	A	G	44661005	3	3	157	1	0	0	0	0	1	0	0	0	17799	188	7	3	850	3	ZNF234	19	44661005	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	189837	44661005	14467978	703	10310											
VASP	7408	broad.mit.edu	37	19	46021017	46021017	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	46021017	C	T	46021017	2	4	157	1	0	0	0	0	0	0	0	1	17140	738	26	2		2	VASP	19	46021017	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1360012	46021017	13107966	704	10311											
DMWD	1762	broad.mit.edu	37	19	46290079	46290079	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	46290079	C	T	46290079	2	4	157	1	0	0	0	0	0	0	0	1	4595	639	23	1		1	DMWD	19	46290079	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	269062	46290079	12838904	705	10312											
BBC3	27113	broad.mit.edu	37	19	47725155	47725155	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	47725155	C	T	47725155	3	4	157	1	0	0	0	0	1	0	0	0	1333	739	26	2	200	2	BBC3	19	47725155	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1435076	47725155	11403828	706	10313											
KPTN	11133	broad.mit.edu	37	19	47980969	47980969	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	47980969	A	C	47980969	3	2	157	1	0	0	0	0	1	0	0	0	8444	159	6	5	469	5	KPTN	19	47980969	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	255814	47980969	11148014	707	10314											
TULP2	7288	broad.mit.edu	37	19	49385360	49385360	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	49385360	T	C	49385360	3	2	157	1	0	0	0	0	1	0	0	0	16786	1638	57	3	194	3	TULP2	19	49385360	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1404391	49385360	9743623	708	10315											
GYS1	2997	broad.mit.edu	37	19	49490600	49490600	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	49490600	C	T	49490600	3	4	157	1	0	0	0	0	1	0	0	0	6919	507	18	2	1926	2	GYS1	19	49490600	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	105240	49490600	9638383	709	10316	113	2									
GYS1	2997	broad.mit.edu	37	19	49490607	49490607	+	Silent	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	49490607	A	T	49490607	2	4	157	1	0	0	0	0	0	0	0	1	6919	291	11	5		5	GYS1	19	49490607	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	7	49490607	9638376	710	10317	113	2									
PPFIA3	8541	broad.mit.edu	37	19	49641637	49641637	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	49641637	C	-	49641637	7	5	157	1	0	1	0	1	0	0	0	0	12318	507	18	0	2087	0	PPFIA3	19	49641637	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	151030	49641637	9487346	711	10318											
TBC1D17	79735	broad.mit.edu	37	19	50381462	50381465	+	Frame_Shift_Del	DEL	CTCT	CTCT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	50381465	CTCT	-	50381462	7	5	157	1	0	1	0	1	0	0	0	0	15618	564	20	0	90	0	TBC1D17	19	50381462	Frame_Shift_Del	DEL	CTCT	TCGA-B0-5098-01A-01D-1421-08	739825	50381462	8747521	712	10319											
TBC1D17	79735	broad.mit.edu	37	19	50391043	50391043	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	50391043	G	A	50391043	2	1	157	1	0	0	0	0	0	0	0	1	15618	933	33	2		2	TBC1D17	19	50391043	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	9581	50391043	8737940	713	10320											
SIGLEC11	114132	broad.mit.edu	37	19	50461598	50461598	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	50461598	G	A	50461598	2	1	157	1	0	0	0	0	0	0	0	1	14320	958	34	2		2	SIGLEC11	19	50461598	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	70555	50461598	8667385	714	10321											
MYH14	79784	broad.mit.edu	37	19	50774688	50774688	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	50774688	C	T	50774688	3	4	157	1	0	0	0	0	1	0	0	0	10040	797	28	2	3150	2	MYH14	19	50774688	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	313090	50774688	8354295	715	10322											
ZNF320	162967	broad.mit.edu	37	19	53367325	53367325	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	53367325	C	T	53367325	3	4	157	1	0	0	0	0	1	0	0	0	17851	754	26	2		2	ZNF320	19	53367325	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2592637	53367325	5761658	716	10323											
CNOT3	4849	broad.mit.edu	37	19	54651965	54651966	+	Frame_Shift_Ins	INS	-	-	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	54651966	-	C	54651965	7	5	157	1	0	1	1	0	0	0	0	0	3622	1203	42	0	1015	0	CNOT3	19	54651965	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	1284640	54651965	4477018	717	10324											
LENG8	114823	broad.mit.edu	37	19	54967841	54967841	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	54967841	G	A	54967841	3	1	157	1	0	0	0	0	1	0	0	0	8731	1029	36	2	1510	2	LENG8	19	54967841	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	315876	54967841	4161142	718	10325											
ZIK1	284307	broad.mit.edu	37	19	58096319	58096319	+	Splice_Site	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	58096319	G	A	58096319	5	1	157	1	0	0	0	0	0	0	1	0	17695	1014	35	2	39	2	ZIK1	19	58096319	Splice_Site	SNP	G	TCGA-B0-5098-01A-01D-1421-08	3128478	58096319	1032664	719	10326											
ZNF586	54807	broad.mit.edu	37	19	58290702	58290702	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	58290702	T	C	58290702	3	2	157	1	0	0	0	0	1	0	0	0	18031	1741	61	3	757	3	ZNF586	19	58290702	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	194383	58290702	838281	720	10327											
ZNF544	27300	broad.mit.edu	37	19	58772838	58772838	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	58772838	A	G	58772838	3	3	157	1	0	0	0	0	1	0	0	0	17989	72	3	3	880	3	ZNF544	19	58772838	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	482136	58772838	356145	721	10328											
PTPRA	5786	broad.mit.edu	37	20	3002826	3002826	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	3002826	T	C	3002826	3	2	157	1	0	0	0	0	1	0	0	0	12808	1580	55	3	1334	3	PTPRA	20	3002826	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08		3002826	60022694	722	10329											
C20orf194	25943	broad.mit.edu	37	20	3240664	3240664	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	3240664	T	C	3240664	3	2	157	1	0	0	0	0	1	0	0	0	2101	1763	61	3	673	3	C20orf194	20	3240664	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	237838	3240664	59784856	723	10330											
SMOX	54498	broad.mit.edu	37	20	4163091	4163091	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	4163091	T	C	4163091	3	2	157	1	0	0	0	0	1	0	0	0	14816	1580	55	3	979	3	SMOX	20	4163091	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	922427	4163091	58862429	724	10331											
LRRN4	164312	broad.mit.edu	37	20	6025250	6025250	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	6025250	G	-	6025250	7	5	157	1	0	1	0	1	0	0	0	0	9044	1000	35	0	1293	0	LRRN4	20	6025250	Frame_Shift_Del	DEL	G	TCGA-B0-5098-01A-01D-1421-08	1862159	6025250	57000270	725	10332											
MYH7B	57644	broad.mit.edu	37	20	33565798	33565798	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	33565798	G	A	33565798	3	1	157	1	0	0	0	0	1	0	0	0	10047	1029	36	2	126	2	MYH7B	20	33565798	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	27540548	33565798	29459722	726	10333											
TRPC4AP	26133	broad.mit.edu	37	20	33603887	33603887	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	33603887	T	A	33603887	3	1	157	1	0	0	0	0	1	0	0	0	16593	1667	58	5	1159	5	TRPC4AP	20	33603887	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	38089	33603887	29421633	727	10334											
FAM83C	128876	broad.mit.edu	37	20	33875605	33875605	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	33875605	G	A	33875605	3	1	157	1	0	0	0	0	1	0	0	0	5642	1000	35	2	1270	2	FAM83C	20	33875605	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	271718	33875605	29149915	728	10335											
CPNE1	8904	broad.mit.edu	37	20	34219276	34219277	+	Splice_Site	DEL	CC	CC	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	34219277	CC	-	34219276	8	5	157	1	0	1	0	1	0	0	1	0	3813	753	26	0	930	0	CPNE1	20	34219276	Splice_Site	DEL	CC	TCGA-B0-5098-01A-01D-1421-08	343671	34219276	28806244	729	10336											
NFS1	9054	broad.mit.edu	37	20	34262295	34262295	+	Silent	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	34262295	C	T	34262295	2	4	157	1	0	0	0	0	0	0	0	1	10392	680	24	2		2	NFS1	20	34262295	Silent	SNP	C	TCGA-B0-5098-01A-01D-1421-08	43019	34262295	28763225	730	10337											
VSTM2L	128434	broad.mit.edu	37	20	36572445	36572445	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	36572445	G	A	36572445	3	1	157	1	0	0	0	0	1	0	0	0	17242	1103	39	1	419	1	VSTM2L	20	36572445	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2310150	36572445	26453075	731	10338											
KIAA1755	85449	broad.mit.edu	37	20	36869844	36869844	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	36869844	G	A	36869844	3	1	157	1	0	0	0	0	1	0	0	0	8264	1203	42	2	2961	2	KIAA1755	20	36869844	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	297399	36869844	26155676	732	10339											
PPP1R16B	26051	broad.mit.edu	37	20	37547271	37547272	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	37547272	AT	-	37547271	7	5	157	1	0	1	0	1	0	0	0	0	12376	333	12	0	1704	0	PPP1R16B	20	37547271	Frame_Shift_Del	DEL	AT	TCGA-B0-5098-01A-01D-1421-08	677427	37547271	25478249	733	10340											
LPIN3	64900	broad.mit.edu	37	20	39978750	39978750	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	39978750	C	T	39978750	3	4	157	1	0	0	0	0	1	0	0	0	8927	710	25	2	837	2	LPIN3	20	39978750	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	2431479	39978750	23046770	734	10341											
CHD6	84181	broad.mit.edu	37	20	40081515	40081515	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	40081515	T	C	40081515	3	2	157	1	0	0	0	0	1	0	0	0	3331	1667	58	3	5027	3	CHD6	20	40081515	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	102765	40081515	22944005	735	10342											
PTPRT	11122	broad.mit.edu	37	20	41306678	41306678	+	Nonsense_Mutation	SNP	A	A	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	41306678	A	T	41306678	4	4	157	1	0	0	0	0	0	1	0	0	12825	340	12	5	3505	5	PTPRT	20	41306678	Nonsense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1225163	41306678	21718842	736	10343											
NCOA3	8202	broad.mit.edu	37	20	46281225	46281225	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	46281225	G	A	46281225	3	1	157	1	0	0	0	0	1	0	0	0	10237	1261	44	2	4126	2	NCOA3	20	46281225	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4974547	46281225	16744295	737	10344											
ARFGEF2	10564	broad.mit.edu	37	20	47612354	47612354	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	47612354	G	A	47612354	2	1	157	1	0	0	0	0	0	0	0	1	853	933	33	2		2	ARFGEF2	20	47612354	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1331129	47612354	15413166	738	10345											
NFATC2	4773	broad.mit.edu	37	20	50140530	50140531	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	50140531	-	G	50140530	7	5	157	1	0	1	1	0	0	0	0	0	10369	652	23	0	2611	0	NFATC2	20	50140530	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	2528176	50140530	12884990	739	10346											
ZNF217	7764	broad.mit.edu	37	20	52193033	52193033	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	52193033	G	A	52193033	3	1	157	1	0	0	0	0	1	0	0	0	17784	1116	39	1	884	1	ZNF217	20	52193033	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2052503	52193033	10832487	740	10347											
CASS4	57091	broad.mit.edu	37	20	55027381	55027381	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	55027381	G	A	55027381	4	1	157	1	0	0	0	0	0	1	0	0	2685	1270	44	2	1167	2	CASS4	20	55027381	Nonsense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2834348	55027381	7998139	741	10348											
YTHDF1	54915	broad.mit.edu	37	20	61845285	61845285	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	61845285	A	G	61845285	2	3	157	1	0	0	0	0	0	0	0	1	17510	30	2	3		3	YTHDF1	20	61845285	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	6817904	61845285	1180235	742	10349											
RBM11	54033	broad.mit.edu	37	21	15599295	15599295	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	15599295	A	G	15599295	3	3	157	1	0	0	0	0	1	0	0	0	13125	217	8	3	545	3	RBM11	21	15599295	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08		15599295	32530600	743	10350											
CCT8	10694	broad.mit.edu	37	21	30439048	30439048	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	30439048	A	G	30439048	3	3	157	1	0	0	0	0	1	0	0	0	2962	130	5	3	1073	3	CCT8	21	30439048	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	14839753	30439048	17690847	744	10351											
KRTAP19-2	337969	broad.mit.edu	37	21	31859576	31859576	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	31859576	C	A	31859576	3	1	157	1	0	0	0	0	1	0	0	0	8536	913	32	4	68	4	KRTAP19-2	21	31859576	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1420528	31859576	16270319	745	10352											
TIAM1	7074	broad.mit.edu	37	21	32492816	32492816	+	Missense_Mutation	SNP	C	C	T	rs143032407	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	32492816	C	T	32492816	3	4	157	1	0	0	0	0	1	0	0	0	15902	768	27	1	133	1	TIAM1	21	32492816	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	633240	32492816	15637079	746	10353											
TIAM1	7074	broad.mit.edu	37	21	32513436	32513436	+	Splice_Site	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	32513436	C	T	32513436	5	4	157	1	0	0	0	0	0	0	1	0	15902	695	24	2	1029	2	TIAM1	21	32513436	Splice_Site	SNP	C	TCGA-B0-5098-01A-01D-1421-08	20620	32513436	15616459	747	10354											
DOPEY2	9980	broad.mit.edu	37	21	37591690	37591690	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	37591690	T	C	37591690	2	2	157	1	0	0	0	0	0	0	0	1	4710	1838	64	3		3	DOPEY2	21	37591690	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	5078254	37591690	10538205	748	10355											
DSCAM	1826	broad.mit.edu	37	21	41416060	41416060	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	41416060	T	C	41416060	2	2	157	1	0	0	0	0	0	0	0	1	4770	1567	55	3		3	DSCAM	21	41416060	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	3824370	41416060	6713835	749	10356											
UMODL1	89766	broad.mit.edu	37	21	43519186	43519186	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	43519186	A	G	43519186	3	3	157	1	0	0	0	0	1	0	0	0	16992	188	7	3	1108	3	UMODL1	21	43519186	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2103126	43519186	4610709	750	10357											
RRP1B	23076	broad.mit.edu	37	21	45107597	45107597	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	45107597	G	A	45107597	3	1	157	1	0	0	0	0	1	0	0	0	13701	1319	46	2	1392	2	RRP1B	21	45107597	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	1588411	45107597	3022298	751	10358											
TRAPPC10	7109	broad.mit.edu	37	21	45523258	45523258	+	Missense_Mutation	SNP	G	G	A	rs138635982	byFrequency	TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	45523258	G	A	45523258	3	1	157	1	0	0	0	0	1	0	0	0	16469	971	34	2	3716	2	TRAPPC10	21	45523258	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	415661	45523258	2606637	752	10359											
TRPM2	7226	broad.mit.edu	37	21	45795728	45795728	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	45795728	G	A	45795728	3	1	157	1	0	0	0	0	1	0	0	0	16598	1087	38	1	806	1	TRPM2	21	45795728	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	272470	45795728	2334167	753	10360											
TRPM2	7226	broad.mit.edu	37	21	45819196	45819196	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	45819196	T	C	45819196	3	2	157	1	0	0	0	0	1	0	0	0	16598	1522	53	3	2134	3	TRPM2	21	45819196	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	23468	45819196	2310699	754	10361											
COL6A2	1292	broad.mit.edu	37	21	47532364	47532364	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	47532364	T	C	47532364	3	2	157	1	0	0	0	0	1	0	0	0	3702	1580	55	3	593	3	COL6A2	21	47532364	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	1713168	47532364	597531	755	10362											
GAB4	128954	broad.mit.edu	37	22	17446137	17446137	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	17446137	A	G	17446137	3	3	157	1	0	0	0	0	1	0	0	0	6158	188	7	3	430	3	GAB4	22	17446137	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08		17446137	33858429	756	10363											
SERPIND1	3053	broad.mit.edu	37	22	21140426	21140426	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	21140426	C	T	21140426	3	4	157	1	0	0	0	0	1	0	0	0	14123	739	26	2	1308	2	SERPIND1	22	21140426	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3694289	21140426	30164140	757	10364											
ZNF280B	140883	broad.mit.edu	37	22	22842771	22842771	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	22842771	T	-	22842771	7	5	157	1	0	1	0	1	0	0	0	0	17827	1493	52	0	682	0	ZNF280B	22	22842771	Frame_Shift_Del	DEL	T	TCGA-B0-5098-01A-01D-1421-08	1702345	22842771	28461795	758	10365											
NF2	4771	broad.mit.edu	37	22	30051666	30051666	+	Splice_Site	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	30051666	G	A	30051666	5	1	157	1	0	0	0	0	0	0	1	0	10364	1275	44	2	622	2	NF2	22	30051666	Splice_Site	SNP	G	TCGA-B0-5098-01A-01D-1421-08	7208895	30051666	21252900	759	10366											
DEPDC5	9681	broad.mit.edu	37	22	32188793	32188793	+	Missense_Mutation	SNP	G	G	A	rs12158711		TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	32188793	G	A	32188793	3	1	157	1	0	0	0	0	1	0	0	0	4444	942	33	2	799	2	DEPDC5	22	32188793	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	2137127	32188793	19115773	760	10367											
TRIOBP	11078	broad.mit.edu	37	22	38168624	38168624	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	38168624	C	T	38168624	3	4	157	1	0	0	0	0	1	0	0	0	16565	893	31	1	7337	1	TRIOBP	22	38168624	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	5979831	38168624	13135942	761	10368											
EIF3L	51386	broad.mit.edu	37	22	38258975	38258975	+	Splice_Site	DEL	G	G	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	38258975	G	-	38258975	8	5	157	1	0	1	0	1	0	0	1	0	5024	1014	35	0	457	0	EIF3L	22	38258975	Splice_Site	DEL	G	TCGA-B0-5098-01A-01D-1421-08	90351	38258975	13045591	762	10369											
APOBEC3D	140564	broad.mit.edu	37	22	39425422	39425422	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	39425422	A	G	39425422	2	3	157	1	0	0	0	0	0	0	0	1	792	378	14	3		3	APOBEC3D	22	39425422	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1166447	39425422	11879144	763	10370											
EP300	2033	broad.mit.edu	37	22	41574312	41574312	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	41574312	A	G	41574312	2	3	157	1	0	0	0	0	0	0	0	1	5150	175	7	3		3	EP300	22	41574312	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	2148890	41574312	9730254	764	10371											
CELSR1	9620	broad.mit.edu	37	22	46931227	46931227	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	46931227	C	-	46931227	7	5	157	1	0	1	0	1	0	0	0	0	3223	739	26	0	7343	0	CELSR1	22	46931227	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	5356915	46931227	4373339	765	10372											
ZBED4	9889	broad.mit.edu	37	22	50280639	50280639	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	50280639	C	A	50280639	3	1	157	1	0	0	0	0	1	0	0	0	17532	855	30	4	3331	4	ZBED4	22	50280639	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	3349412	50280639	1023927	766	10373											
MXRA5	25878	broad.mit.edu	37	X	3235384	3235384	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	3235384	G	A	3235384	3	1	157	1	0	0	0	0	1	0	0	0	10010	1087	38	1	2156	1	MXRA5	23	3235384	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08		3235384	152035176	767	10374											
RPGR	6103	broad.mit.edu	37	X	38145101	38145101	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	38145101	C	-	38145101	7	5	157	1	0	1	0	1	0	0	0	0	13561	864	30	0	870	0	RPGR	23	38145101	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	34909717	38145101	117125459	768	10375											
CACNA1F	778	broad.mit.edu	37	X	49071830	49071830	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	49071830	T	C	49071830	3	2	157	1	0	0	0	0	1	0	0	0	2545	1638	57	3	2574	3	CACNA1F	23	49071830	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	10926729	49071830	106198730	769	10376											
ZMYM3	9203	broad.mit.edu	37	X	70465236	70465236	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	70465236	T	C	70465236	3	2	157	1	0	0	0	0	1	0	0	0	17713	1493	52	3	1184	3	ZMYM3	23	70465236	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	21393406	70465236	84805324	770	10377											
UPRT	139596	broad.mit.edu	37	X	74520734	74520734	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	74520734	G	A	74520734	3	1	157	1	0	0	0	0	1	0	0	0	17026	1261	44	2	779	2	UPRT	23	74520734	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	4055498	74520734	80749826	771	10378											
TAF9B	51616	broad.mit.edu	37	X	77387115	77387115	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	77387115	T	C	77387115	3	2	157	1	0	0	0	0	1	0	0	0	15548	1406	49	3	11	3	TAF9B	23	77387115	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	2866381	77387115	77883445	772	10379											
PCDH11X	27328	broad.mit.edu	37	X	91090852	91090852	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	T	91090852	G	T	91090852	3	4	157	1	0	0	0	0	1	0	0	0	11515	1174	41	4	351	4	PCDH11X	23	91090852	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	13703737	91090852	64179708	773	10380											
NOX1	27035	broad.mit.edu	37	X	100103736	100103736	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	100103736	T	C	100103736	3	2	157	1	0	0	0	0	1	0	0	0	10563	1464	51	3	251	3	NOX1	23	100103736	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	9012884	100103736	55166824	774	10381											
GLA	2717	broad.mit.edu	37	X	100656700	100656700	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	100656700	G	A	100656700	3	1	157	1	0	0	0	0	1	0	0	0	6433	1203	42	2	842	2	GLA	23	100656700	Missense_Mutation	SNP	G	TCGA-B0-5098-01A-01D-1421-08	552964	100656700	54613860	775	10382											
ATG4A	115201	broad.mit.edu	37	X	107381402	107381402	+	Nonsense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	107381402	T	G	107381402	4	3	157	1	0	0	0	0	0	1	0	0	1096	1500	52	5	829	5	ATG4A	23	107381402	Nonsense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	6724702	107381402	47889158	776	10383											
GUCY2F	2986	broad.mit.edu	37	X	108631735	108631735	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	108631735	C	A	108631735	3	1	157	1	0	0	0	0	1	0	0	0	6905	884	31	4	407	4	GUCY2F	23	108631735	Missense_Mutation	SNP	C	TCGA-B0-5098-01A-01D-1421-08	1250333	108631735	46638825	777	10384											
ACSL4	2182	broad.mit.edu	37	X	108912280	108912280	+	Silent	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	108912280	A	G	108912280	2	3	157	1	0	0	0	0	0	0	0	1	179	214	8	3		3	ACSL4	23	108912280	Silent	SNP	A	TCGA-B0-5098-01A-01D-1421-08	280545	108912280	46358280	778	10385											
RHOXF1	158800	broad.mit.edu	37	X	119249701	119249701	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	119249701	T	C	119249701	2	2	157	1	0	0	0	0	0	0	0	1	13360	1683	59	3		3	RHOXF1	23	119249701	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	10337421	119249701	36020859	779	10386											
ATP1B4	23439	broad.mit.edu	37	X	119509328	119509328	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	119509328	T	G	119509328	3	3	157	1	0	0	0	0	1	0	0	0	1135	1493	52	5	682	5	ATP1B4	23	119509328	Missense_Mutation	SNP	T	TCGA-B0-5098-01A-01D-1421-08	259627	119509328	35761232	780	10387											
BCORL1	63035	broad.mit.edu	37	X	129173135	129173135	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	129173135	A	G	129173135	3	3	157	1	0	0	0	0	1	0	0	0	1387	101	4	3	4756	3	BCORL1	23	129173135	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	9663807	129173135	26097425	781	10388											
GPR112	139378	broad.mit.edu	37	X	135431755	135431755	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	135431755	A	G	135431755	3	3	157	1	0	0	0	0	1	0	0	0	6636	449	16	3	5900	3	GPR112	23	135431755	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	6258620	135431755	19838805	782	10389											
PASD1	139135	broad.mit.edu	37	X	150780186	150780186	+	Silent	SNP	T	T	C			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	C	150780186	T	C	150780186	2	2	157	1	0	0	0	0	0	0	0	1	11478	1702	59	3		3	PASD1	23	150780186	Silent	SNP	T	TCGA-B0-5098-01A-01D-1421-08	15348431	150780186	4490374	783	10390											
GABRQ	55879	broad.mit.edu	37	X	151821591	151821591	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	-	151821591	C	-	151821591	7	5	157	1	0	1	0	1	0	0	0	0	6182	747	26	0	1780	0	GABRQ	23	151821591	Frame_Shift_Del	DEL	C	TCGA-B0-5098-01A-01D-1421-08	1041405	151821591	3448969	784	10391											
IDH3G	3421	broad.mit.edu	37	X	153059774	153059774	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	153059774	A	G	153059774	3	3	157	1	0	0	0	0	1	0	0	0	7505	188	7	3	1288	3	IDH3G	23	153059774	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	1238183	153059774	2210786	785	10392											
ATP6AP1	537	broad.mit.edu	37	X	153662708	153662708	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	G	153662708	A	G	153662708	3	3	157	1	0	0	0	0	1	0	0	0	1165	275	10	3	865	3	ATP6AP1	23	153662708	Missense_Mutation	SNP	A	TCGA-B0-5098-01A-01D-1421-08	602934	153662708	1607852	786	10393											
F8	2157	broad.mit.edu	37	X	154158320	154158320	+	Silent	SNP	G	G	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	154158320	G	A	154158320	2	1	157	1	0	0	0	0	0	0	0	1	5352	1020	36	2		2	F8	23	154158320	Silent	SNP	G	TCGA-B0-5098-01A-01D-1421-08	495612	154158320	1112240	787	10394											
BRCC3	79184	broad.mit.edu	37	X	154344352	154344353	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B0-5098-01A-01D-1421-08	TCGA-B0-5098-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7d1d2022-4a61-4652-9f0c-8c92dfcb6d38	6b061e59-9fc8-4777-89ea-8887bfbba9c1	A	154344353	-	A	154344352	7	5	157	1	0	1	1	0	0	0	0	0	1502	594	21	0	678	0	BRCC3	23	154344352	Frame_Shift_Ins	INS	-	TCGA-B0-5098-01A-01D-1421-08	186032	154344352	926208	788	10395											
RAD54L	8438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46726269	46726269	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	-	46726269	C	-	46726269	7	5	158	1	0	1	0	1	0	0	0	0	13006	739	26	0	485	0	RAD54L	1	46726269	Frame_Shift_Del	DEL	C	TCGA-B0-5099-01A-01D-1421-08		46726269	202524352	1	10396											
CRYZ	1429	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	75172631	75172631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	75172631	C	T	75172631	3	4	158	1	0	0	0	0	1	0	0	0	3924	594	21	2	217	2	CRYZ	1	75172631	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	28446362	75172631	174077990	2	10397											
SASS6	163786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100575995	100575995	+	Silent	SNP	A	A	G	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	G	100575995	A	G	100575995	2	3	158	1	0	0	0	0	0	0	0	1	13863	98	4	3		3	SASS6	1	100575995	Silent	SNP	A	TCGA-B0-5099-01A-01D-1421-08	25403364	100575995	148674626	3	10398											
CADM3	57863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	159161760	159161760	+	Silent	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	159161760	G	A	159161760	2	1	158	1	0	0	0	0	0	0	0	1	2570	1335	47	2		2	CADM3	1	159161760	Silent	SNP	G	TCGA-B0-5099-01A-01D-1421-08	58585765	159161760	90088861	4	10399											
VANGL2	57216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160385972	160385972	+	Silent	SNP	G	G	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	160385972	G	C	160385972	2	2	158	1	0	0	0	0	0	0	0	1	17132	1246	43	4		4	VANGL2	1	160385972	Silent	SNP	G	TCGA-B0-5099-01A-01D-1421-08	1224212	160385972	88864649	5	10400											
CENPF	1063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	214825173	214825173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	214825173	C	T	214825173	3	4	158	1	0	0	0	0	1	0	0	0	3233	527	19	1	8158	1	CENPF	1	214825173	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	54439201	214825173	34425448	6	10401											
LGALS8	3964	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	236711354	236711354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	236711354	A	C	236711354	3	2	158	1	0	0	0	0	1	0	0	0	8754	14	1	5	1011	5	LGALS8	1	236711354	Missense_Mutation	SNP	A	TCGA-B0-5099-01A-01D-1421-08	21886181	236711354	12539267	7	10402											
CCDC88A	55704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	55570817	55570817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	G	55570817	C	G	55570817	3	3	158	1	0	0	0	0	1	0	0	0	2865	864	30	4	4399	4	CCDC88A	2	55570817	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08		55570817	187628556	8	10403											
SCN9A	6335	hgsc.bcm.edu;ucsc.edu	37	2	167060645	167060645	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	-	167060645	T	-	167060645	7	5	158	1	0	1	0	1	0	0	0	0	13938	1464	51	0	1380	0	SCN9A	2	167060645	Frame_Shift_Del	DEL	T	TCGA-B0-5099-01A-01D-1421-08	111489828	167060645	76138728	9	10404											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191482	10191482	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	-	10191482	A	-	10191482	7	5	158	1	0	1	0	1	0	0	0	0	17174	247	9	0	485	0	VHL	3	10191482	Frame_Shift_Del	DEL	A	TCGA-B0-5099-01A-01D-1421-08		10191482	187830948	10	10405											
SFMBT1	51460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52960072	52960072	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	52960072	G	C	52960072	3	2	158	1	0	0	0	0	1	0	0	0	14170	971	34	4	1542	4	SFMBT1	3	52960072	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	42768590	52960072	145062358	11	10406	114	2									
SFMBT1	51460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52960073	52960073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	52960073	C	T	52960073	3	4	158	1	0	0	0	0	1	0	0	0	14170	797	28	2	1543	2	SFMBT1	3	52960073	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	1	52960073	145062357	12	10407	114	2									
YTHDC1	91746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	69204039	69204039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	69204039	T	C	69204039	3	2	158	1	0	0	0	0	1	0	0	0	17508	1406	49	3	2155	3	YTHDC1	4	69204039	Missense_Mutation	SNP	T	TCGA-B0-5099-01A-01D-1421-08		69204039	121950237	13	10408											
PPA2	27068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	106395063	106395063	+	Missense_Mutation	SNP	G	G	A	rs142379853		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	106395063	G	A	106395063	3	1	158	1	0	0	0	0	1	0	0	0	12294	1116	39	1	907	1	PPA2	4	106395063	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	37191024	106395063	84759213	14	10409											
NPNT	255743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	106848531	106848531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	106848531	G	A	106848531	3	1	158	1	0	0	0	0	1	0	0	0	10597	1116	39	1	276	1	NPNT	4	106848531	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	453468	106848531	84305745	15	10410											
IL21	59067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	123542048	123542048	+	Missense_Mutation	SNP	C	C	T	rs141748932	bycluster;by1000genomes	TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	123542048	C	T	123542048	3	4	158	1	0	0	0	0	1	0	0	0	7677	536	19	1	389	1	IL21	4	123542048	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	16693517	123542048	67612228	16	10411											
RAI14	26064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	34757614	34757614	+	Silent	SNP	C	C	G	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	G	34757614	C	G	34757614	2	3	158	1	0	0	0	0	0	0	0	1	13021	639	23	4		4	RAI14	5	34757614	Silent	SNP	C	TCGA-B0-5099-01A-01D-1421-08		34757614	146157646	17	10412											
CCDC112	153733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	114620509	114620509	+	Missense_Mutation	SNP	G	G	A	rs187304678	by1000genomes	TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	114620509	G	A	114620509	3	1	158	1	0	0	0	0	1	0	0	0	2751	1145	40	1	1411	1	CCDC112	5	114620509	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	79862895	114620509	66294751	18	10413											
RAPGEF6	51735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	130764648	130764648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	G	130764648	T	G	130764648	3	3	158	1	0	0	0	0	1	0	0	0	13061	1580	55	5	86	5	RAPGEF6	5	130764648	Missense_Mutation	SNP	T	TCGA-B0-5099-01A-01D-1421-08	16144139	130764648	50150612	19	10414											
P4HA2	8974	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131543565	131543565	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	131543565	G	A	131543565	4	1	158	1	0	0	0	0	0	1	0	0	11364	1386	48	2	787	2	P4HA2	5	131543565	Nonsense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	778917	131543565	49371695	20	10415											
PCBD2	84105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134294744	134294744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	134294744	G	T	134294744	3	4	158	1	0	0	0	0	1	0	0	0	11506	1377	48	4	241	4	PCBD2	5	134294744	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	2751179	134294744	46620516	21	10416											
PLAC8L1	153770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	145477733	145477733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	145477733	C	T	145477733	3	4	158	1	0	0	0	0	1	0	0	0	12023	913	32	2	303	2	PLAC8L1	5	145477733	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	11182989	145477733	35437527	22	10417											
BTNL3	10917	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	180420008	180420008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	180420008	G	A	180420008	3	1	158	1	0	0	0	0	1	0	0	0	1568	1058	37	1	251	1	BTNL3	5	180420008	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	34942275	180420008	495252	23	10418											
FANCE	2178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35426171	35426171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	35426171	G	A	35426171	3	1	158	1	0	0	0	0	1	0	0	0	5673	971	34	2	1085	2	FANCE	6	35426171	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08		35426171	135688896	24	10419											
MRPS18A	55168	broad.mit.edu	37	6	43655468	43655468	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	43655468	A	A	43655468	3	1	158	1	0	0	0	0	1	0	0	0	9835	594	21	4	565	4	MRPS18A	6	43655468	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	8229297	43655468	127459599	25	10420											
HSP90AB1	3326	hgsc.bcm.edu;ucsc.edu	37	6	44219603	44219604	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	44219604	-	C	44219603	7	5	158	1	0	1	1	0	0	0	0	0	7409	1667	58	0	1474	0	HSP90AB1	6	44219603	Frame_Shift_Ins	INS	-	TCGA-B0-5099-01A-01D-1421-08	564135	44219603	126895464	26	10421											
IGF2R	3482	broad.mit.edu;ucsc.edu	37	6	160526024	160526024	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	-	160526024	-	-	160526024	7	5	158	1	0	1	0	1	0	0	0	0	7583	1000	35	0	7574	0	IGF2R	6	160526024	Frame_Shift_Del	DEL	G	TCGA-B0-5099-01A-01D-1421-08	116306421	160526024	10589043	27	10422											
TSGA14	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	130042593	130042593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	130042593	T	C	130042593	3	2	158	1	0	0	0	0	1	0	0	0	16632	1609	56	3	671	3	TSGA14	7	130042593	Missense_Mutation	SNP	T	TCGA-B0-5099-01A-01D-1421-08		130042593	29096070	28	10423											
MLL3	58508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151877175	151877175	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	151877175	G	A	151877175	4	1	158	1	0	0	0	0	0	1	0	0	9629	1386	48	2	7641	2	MLL3	7	151877175	Nonsense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	21834582	151877175	7261488	29	10424											
INTS10	55174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	19687916	19687916	+	Splice_Site	SNP	G	G	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	19687916	G	C	19687916	5	2	158	1	0	0	0	0	0	0	1	0	7783	956	33	4	1178	4	INTS10	8	19687916	Splice_Site	SNP	G	TCGA-B0-5099-01A-01D-1421-08		19687916	126676106	30	10425											
PURG	29942	hgsc.bcm.edu;ucsc.edu	37	8	30889951	30889958	+	Frame_Shift_Del	DEL	CTTCAGCT	CTTCAGCT	-	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	CTTCAGCT	CTTCAGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	-	30889958	CTTCAGCT	-	30889951	7	5	158	1	0	1	0	1	0	0	0	0	12842	680	24	0	808	0	PURG	8	30889951	Frame_Shift_Del	DEL	CTTCAGCT	TCGA-B0-5099-01A-01D-1421-08	11202035	30889951	115474071	31	10426											
MYST3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	41836218	41836218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	41836218	G	A	41836218	3	1	158	1	0	0	0	0	1	0	0	0	10111	1144	40	1	5077	1	MYST3	8	41836218	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	10946267	41836218	104527804	32	10427											
ACO1	48	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32408576	32408576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	32408576	C	A	32408576	3	1	158	1	0	0	0	0	1	0	0	0	146	855	30	4	341	4	ACO1	9	32408576	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08		32408576	108804855	33	10428											
TAF1L	138474	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32630843	32630843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	32630843	G	T	32630843	3	4	158	1	0	0	0	0	1	0	0	0	15535	1319	46	4	749	4	TAF1L	9	32630843	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	222267	32630843	108582588	34	10429	115	2									
TAF1L	138474	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32630844	32630844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	G	32630844	C	G	32630844	3	3	158	1	0	0	0	0	1	0	0	0	15535	796	28	4	750	4	TAF1L	9	32630844	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	1	32630844	108582587	35	10430	115	2									
GCNT1	2650	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	79117316	79117316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	79117316	C	T	79117316	4	4	158	1	0	0	0	0	0	1	0	0	6307	760	27	1	21	1	GCNT1	9	79117316	Nonsense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	46486472	79117316	62096115	36	10431											
ECM2	1842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95272275	95272275	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	95272275	A	C	95272275	3	2	158	1	0	0	0	0	1	0	0	0	4900	98	4	5	907	5	ECM2	9	95272275	Missense_Mutation	SNP	A	TCGA-B0-5099-01A-01D-1421-08	16154959	95272275	45941156	37	10432											
RNF20	56254	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	104316360	104316360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	104316360	G	T	104316360	3	4	158	1	0	0	0	0	1	0	0	0	13486	1348	47	4	2042	4	RNF20	9	104316360	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	9044085	104316360	36897071	38	10433											
ERCC6	2074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	50690813	50690813	+	Silent	SNP	A	A	G	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	G	50690813	A	G	50690813	2	3	158	1	0	0	0	0	0	0	0	1	5219	40	2	3		3	ERCC6	10	50690813	Silent	SNP	A	TCGA-B0-5099-01A-01D-1421-08		50690813	84843934	39	10434											
SLC15A3	51296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60709539	60709539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	60709539	C	T	60709539	3	4	158	1	0	0	0	0	1	0	0	0	14413	478	17	2	690	2	SLC15A3	11	60709539	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08		60709539	74296977	40	10435											
HSPA8	3312	broad.mit.edu;hgsc.bcm.edu	37	11	122930262	122930262	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	122930262	G	A	122930262	4	1	158	1	0	0	0	0	0	1	0	0	7423	1299	45	2	921	2	HSPA8	11	122930262	Nonsense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	62220723	122930262	12076254	41	10436	116	2									
HSPA8	3312	broad.mit.edu;hgsc.bcm.edu	37	11	122930264	122930264	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	122930264	A	T	122930264	3	4	158	1	0	0	0	0	1	0	0	0	7423	101	4	5	923	5	HSPA8	11	122930264	Missense_Mutation	SNP	A	TCGA-B0-5099-01A-01D-1421-08	2	122930264	12076252	42	10437	116	2									
TMEM45B	120224	broad.mit.edu;hgsc.bcm.edu	37	11	129728494	129728494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	129728494	G	A	129728494	3	1	158	1	0	0	0	0	1	0	0	0	16182	1117	39	1	760	1	TMEM45B	11	129728494	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	6798230	129728494	5278022	43	10438											
A2M	2	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9248168	9248168	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	9248168	A	T	9248168	3	4	158	1	0	0	0	0	1	0	0	0	4	388	14	5	2528	5	A2M	12	9248168	Missense_Mutation	SNP	A	TCGA-B0-5099-01A-01D-1421-08		9248168	124603727	44	10439											
NAV3	89795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	78400974	78400974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	78400974	G	T	78400974	3	4	158	1	0	0	0	0	1	0	0	0	10192	933	33	4	1686	4	NAV3	12	78400974	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	69152806	78400974	55450921	45	10440											
DHX37	57647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	125462030	125462030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	125462030	G	A	125462030	3	1	158	1	0	0	0	0	1	0	0	0	4512	1144	40	1	2820	1	DHX37	12	125462030	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	47061056	125462030	8389865	46	10441											
GPR180	160897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	95271760	95271762	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	-	95271762	GTT	-	95271760	7	5	158	1	0	1	0	1	0	0	0	0	6683	1029	36	0	743	0	GPR180	13	95271760	In_Frame_Del	DEL	GTT	TCGA-B0-5099-01A-01D-1421-08		95271760	19898118	47	10442											
IRF9	10379	broad.mit.edu;hgsc.bcm.edu	37	14	24635394	24635394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	24635394	T	C	24635394	3	2	158	1	0	0	0	0	1	0	0	0	7844	1667	58	3	1201	3	IRF9	14	24635394	Missense_Mutation	SNP	T	TCGA-B0-5099-01A-01D-1421-08		24635394	82714146	48	10443											
AHNAK2	113146	broad.mit.edu;hgsc.bcm.edu	37	14	105414746	105414746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	105414746	C	T	105414746	3	4	158	1	0	0	0	0	1	0	0	0	415	507	18	2	10349	2	AHNAK2	14	105414746	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	80779352	105414746	1934794	49	10444											
THBS1	7057	broad.mit.edu;hgsc.bcm.edu	37	15	39882824	39882824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	39882824	G	T	39882824	3	4	158	1	0	0	0	0	1	0	0	0	15865	1246	43	4	2303	4	THBS1	15	39882824	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08		39882824	62648568	50	10445											
SERF2	10169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	44085976	44085976	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	44085976	G	C	44085976	3	2	158	1	0	0	0	0	1	0	0	0	14089	1392	48	4		4	SERF2	15	44085976	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	4203152	44085976	58445416	51	10446											
SECISBP2L	9728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49284863	49284863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	49284863	C	T	49284863	3	4	158	1	0	0	0	0	1	0	0	0	14020	594	21	2	425	2	SECISBP2L	15	49284863	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	5198887	49284863	53246529	52	10447	117	2									
SECISBP2L	9728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49284864	49284864	+	Silent	SNP	A	A	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	49284864	A	C	49284864	2	2	158	1	0	0	0	0	0	0	0	1	14020	175	7	5		5	SECISBP2L	15	49284864	Silent	SNP	A	TCGA-B0-5099-01A-01D-1421-08	1	49284864	53246528	53	10448	117	2									
NEO1	4756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	73575304	73575304	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	73575304	G	A	73575304	5	1	158	1	0	0	0	0	0	0	1	0	10343	1014	35	2	3352	2	NEO1	15	73575304	Splice_Site	SNP	G	TCGA-B0-5099-01A-01D-1421-08	24290440	73575304	28956088	54	10449											
CNOT1	23019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58572759	58572763	+	Frame_Shift_Del	DEL	GTAGC	GTAGC	-	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	GTAGC	GTAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	-	58572763	GTAGC	-	58572759	7	5	158	1	0	1	0	1	0	0	0	0	3619	1372	48	0	2134	0	CNOT1	16	58572759	Frame_Shift_Del	DEL	GTAGC	TCGA-B0-5099-01A-01D-1421-08		58572759	31781994	55	10450											
TOM1L2	146691	broad.mit.edu;ucsc.edu	37	17	17769632	17769632	+	Silent	SNP	G	T	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	17769632	T	T	17769632	2	4	158	1	0	0	0	0	0	0	0	1	16365	929	33	4		4	TOM1L2	17	17769632	Silent	SNP	G	TCGA-B0-5099-01A-01D-1421-08		17769632	63425578	56	10451											
DHRS13	147015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27228249	27228249	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	-	27228249	A	-	27228249	7	5	158	1	0	1	0	1	0	0	0	0	4491	243	9	0	700	0	DHRS13	17	27228249	Frame_Shift_Del	DEL	A	TCGA-B0-5099-01A-01D-1421-08	9458617	27228249	53966961	57	10452											
GOSR1	9527	broad.mit.edu;hgsc.bcm.edu	37	17	28846964	28846964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	G	28846964	A	G	28846964	3	3	158	1	0	0	0	0	1	0	0	0	6584	449	16	3	583	3	GOSR1	17	28846964	Missense_Mutation	SNP	A	TCGA-B0-5099-01A-01D-1421-08	1618715	28846964	52348246	58	10453											
AP2B1	163	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33932800	33932800	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	33932800	A	T	33932800	3	4	158	1	0	0	0	0	1	0	0	0	741	333	12	5	230	5	AP2B1	17	33932800	Missense_Mutation	SNP	A	TCGA-B0-5099-01A-01D-1421-08	5085836	33932800	47262410	59	10454											
TNRC6C	57690	hgsc.bcm.edu	37	17	76083029	76083029	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	-	76083029	G	-	76083029	7	5	158	1	0	1	0	1	0	0	0	0	16354	1074	38	0	3699	0	TNRC6C	17	76083029	Frame_Shift_Del	DEL	G	TCGA-B0-5099-01A-01D-1421-08	42150229	76083029	5112181	60	10455											
ROCK1	6093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	18586538	18586538	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	18586538	T	A	18586538	3	1	158	1	0	0	0	0	1	0	0	0	13530	1635	57	5	2477	5	ROCK1	18	18586538	Missense_Mutation	SNP	T	TCGA-B0-5099-01A-01D-1421-08		18586538	59490710	61	10456											
UBXN6	80700	broad.mit.edu;hgsc.bcm.edu	37	19	4446542	4446542	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	4446542	A	C	4446542	3	2	158	1	0	0	0	0	1	0	0	0	16929	246	9	5	466	5	UBXN6	19	4446542	Missense_Mutation	SNP	A	TCGA-B0-5099-01A-01D-1421-08		4446542	54682441	62	10457											
ARRDC5	645432	broad.mit.edu;hgsc.bcm.edu	37	19	4891119	4891119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	4891119	G	A	4891119	3	1	158	1	0	0	0	0	1	0	0	0	986	942	33	2	64	2	ARRDC5	19	4891119	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08	444577	4891119	54237864	63	10458											
HPN	3249	broad.mit.edu;ucsc.edu	37	19	35540222	35540222	+	Silent	SNP	A	G	G	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	G	35540222	G	G	35540222	2	3	158	1	0	0	0	0	0	0	0	1	7343	272	10	3		3	HPN	19	35540222	Silent	SNP	A	TCGA-B0-5099-01A-01D-1421-08	30649103	35540222	23588761	64	10459											
GNAS	2778	broad.mit.edu	37	20	57428891	57428891	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	57428891	C	C	57428891	3	2	158	1	0	0	0	0	1	0	0	0	6517	1319	46	4	1315	4	GNAS	20	57428891	Missense_Mutation	SNP	G	TCGA-B0-5099-01A-01D-1421-08		57428891	5596629	65	10460											
CDH4	1002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	60499473	60499473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	60499473	C	A	60499473	3	1	158	1	0	0	0	0	1	0	0	0	3114	506	18	4	1752	4	CDH4	20	60499473	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	3070582	60499473	2526047	66	10461											
NFAM1	150372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42807545	42807546	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	C	42807546	-	C	42807545	7	5	158	1	0	1	1	0	0	0	0	0	10365	1783	62	0	513	0	NFAM1	22	42807545	Frame_Shift_Ins	INS	-	TCGA-B0-5099-01A-01D-1421-08		42807545	8497021	67	10462											
SCUBE1	80274	broad.mit.edu;hgsc.bcm.edu	37	22	43625097	43625097	+	Silent	SNP	G	G	A	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	A	43625097	G	A	43625097	2	1	158	1	0	0	0	0	0	0	0	1	13957	1140	40	1		1	SCUBE1	22	43625097	Silent	SNP	G	TCGA-B0-5099-01A-01D-1421-08	817552	43625097	7679469	68	10463											
CLCN4	1183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	10176319	10176319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	10176319	C	T	10176319	3	4	158	1	0	0	0	0	1	0	0	0	3467	768	27	1	1104	1	CLCN4	23	10176319	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08		10176319	145094241	69	10464											
CFP	5199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	47485783	47485783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	T	47485783	C	T	47485783	3	4	158	1	0	0	0	0	1	0	0	0	3295	884	31	1	345	1	CFP	23	47485783	Missense_Mutation	SNP	C	TCGA-B0-5099-01A-01D-1421-08	37309464	47485783	107784777	70	10465											
USP26	83844	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	132160271	132160271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5099-01A-01D-1421-08	TCGA-B0-5099-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3150136-ae55-49d0-9212-86728464167d	1b289013-495e-4a64-a3d1-4e5618c62f4c	G	132160271	A	G	132160271	3	3	158	1	0	0	0	0	1	0	0	0	17069	391	14	3	766	3	USP26	23	132160271	Missense_Mutation	SNP	A	TCGA-B0-5099-01A-01D-1421-08	84674488	132160271	23110289	71	10466											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu	37	1	11188177	11188177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	11188177	T	A	11188177	3	1	159	1	0	0	0	0	1	0	0	0	9961	1464	51	5	1796	5	MTOR	1	11188177	Missense_Mutation	SNP	T	TCGA-B0-5100-01A-01D-1421-08		11188177	238062444	1	10467											
APCS	325	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	159557958	159557958	+	Silent	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	159557958	G	A	159557958	2	1	159	1	0	0	0	0	0	0	0	1	767	1074	38	1		1	APCS	1	159557958	Silent	SNP	G	TCGA-B0-5100-01A-01D-1421-08	148369781	159557958	89692663	2	10468											
RYR2	6262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	237947421	237947421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	237947421	G	A	237947421	3	1	159	1	0	0	0	0	1	0	0	0	13782	1059	37	1	12767	1	RYR2	1	237947421	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08	78389463	237947421	11303200	3	10469											
NLRP3	114548	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247586613	247586613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	G	247586613	A	G	247586613	3	3	159	1	0	0	0	0	1	0	0	0	10485	304	11	3	371	3	NLRP3	1	247586613	Missense_Mutation	SNP	A	TCGA-B0-5100-01A-01D-1421-08	9639192	247586613	1664008	4	10470											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179397153	179397153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	179397153	G	A	179397153	3	1	159	1	0	0	0	0	1	0	0	0	16747	1261	44	2	3810	2	TTN	2	179397153	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08		179397153	63802220	5	10471											
ZNF385B	151126	broad.mit.edu;hgsc.bcm.edu	37	2	180308134	180308134	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	C	180308134	G	C	180308134	3	2	159	1	0	0	0	0	1	0	0	0	17889	1000	35	4	160	4	ZNF385B	2	180308134	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08	910981	180308134	62891239	6	10472											
COL4A3	1285	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228173652	228173652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	228173652	G	A	228173652	3	1	159	1	0	0	0	0	1	0	0	0	3693	1319	46	2	4694	2	COL4A3	2	228173652	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08	47865518	228173652	15025721	7	10473											
DOCK3	1795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	51198060	51198060	+	Silent	SNP	C	C	T	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	T	51198060	C	T	51198060	2	4	159	1	0	0	0	0	0	0	0	1	4690	680	24	2		2	DOCK3	3	51198060	Silent	SNP	C	TCGA-B0-5100-01A-01D-1421-08		51198060	146824370	8	10474											
CD200	4345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	112054820	112054820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	T	112054820	C	T	112054820	3	4	159	1	0	0	0	0	1	0	0	0	2982	681	24	2	49	2	CD200	3	112054820	Missense_Mutation	SNP	C	TCGA-B0-5100-01A-01D-1421-08	60856760	112054820	85967610	9	10475											
MASP1	5648	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186947662	186947662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	186947662	G	A	186947662	3	1	159	1	0	0	0	0	1	0	0	0	9329	1115	39	1	796	1	MASP1	3	186947662	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08	74892842	186947662	11074768	10	10476											
ADCY2	108	broad.mit.edu;ucsc.edu	37	5	7626320	7626320	+	Missense_Mutation	SNP	C	T	T	rs188113151	by1000genomes	TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	T	7626320	T	T	7626320	3	4	159	1	0	0	0	0	1	0	0	0	294	768	27	1	625	1	ADCY2	5	7626320	Missense_Mutation	SNP	C	TCGA-B0-5100-01A-01D-1421-08		7626320	173288940	11	10477											
CDKN2AIPNL	91368	hgsc.bcm.edu;ucsc.edu	37	5	133747410	133747410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	133747410	G	A	133747410	3	1	159	1	0	0	0	0	1	0	0	0	3165	1087	38	1	226	1	CDKN2AIPNL	5	133747410	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08	126121090	133747410	47167850	12	10478	118	2									
CDKN2AIPNL	91368	broad.mit.edu;hgsc.bcm.edu	37	5	133747411	133747411	+	Silent	SNP	C	C	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	133747411	C	A	133747411	2	1	159	1	0	0	0	0	0	0	0	1	3165	697	25	4		4	CDKN2AIPNL	5	133747411	Silent	SNP	C	TCGA-B0-5100-01A-01D-1421-08	1	133747411	47167849	13	10479	118	2									
PCDHB16	57717	broad.mit.edu;hgsc.bcm.edu	37	5	140563511	140563511	+	Silent	SNP	C	C	T	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	T	140563511	C	T	140563511	2	4	159	1	0	0	0	0	0	0	0	1	11548	883	31	1		1	PCDHB16	5	140563511	Silent	SNP	C	TCGA-B0-5100-01A-01D-1421-08	6816100	140563511	40351749	14	10480											
MRPS18B	28973	broad.mit.edu;hgsc.bcm.edu	37	6	30593435	30593435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	C	30593435	T	C	30593435	3	2	159	1	0	0	0	0	1	0	0	0	9836	1580	55	3	664	3	MRPS18B	6	30593435	Missense_Mutation	SNP	T	TCGA-B0-5100-01A-01D-1421-08		30593435	140521632	15	10481											
MAP3K4	4216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	161530934	161530934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	T	161530934	C	T	161530934	3	4	159	1	0	0	0	0	1	0	0	0	9259	652	23	1	4474	1	MAP3K4	6	161530934	Missense_Mutation	SNP	C	TCGA-B0-5100-01A-01D-1421-08	130937499	161530934	9584133	16	10482											
SMURF1	57154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	98639741	98639741	+	Silent	SNP	G	G	C	rs138664041	alternate_allele	TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	C	98639741	G	C	98639741	2	2	159	1	0	0	0	0	0	0	0	1	14832	1130	39	4		4	SMURF1	7	98639741	Silent	SNP	G	TCGA-B0-5100-01A-01D-1421-08		98639741	60498922	17	10483											
ZNHIT1	10467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100867049	100867049	+	Silent	SNP	A	A	T	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	T	100867049	A	T	100867049	2	4	159	1	0	0	0	0	0	0	0	1	18218	204	8	5		5	ZNHIT1	7	100867049	Silent	SNP	A	TCGA-B0-5100-01A-01D-1421-08	2227308	100867049	58271614	18	10484											
NOS3	4846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150698930	150698930	+	Silent	SNP	G	G	A	rs61734203	bycluster;byfrequency	TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	150698930	G	A	150698930	2	1	159	1	0	0	0	0	0	0	0	1	10551	1074	38	1		1	NOS3	7	150698930	Silent	SNP	G	TCGA-B0-5100-01A-01D-1421-08	49831881	150698930	8439733	19	10485											
UNC5D	137970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	35631934	35631934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	35631934	G	A	35631934	3	1	159	1	0	0	0	0	1	0	0	0	17007	1290	45	2	2658	2	UNC5D	8	35631934	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08		35631934	110732088	20	10486											
ASPH	444	hgsc.bcm.edu	37	8	62588723	62588724	+	In_Frame_Ins	INS	-	-	TTC	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	TTC	62588724	-	TTC	62588723	7	5	159	1	0	1	1	0	0	0	0	0	1053	1609	56	0	2553	0	ASPH	8	62588723	In_Frame_Ins	INS	-	TCGA-B0-5100-01A-01D-1421-08	26956789	62588723	83775299	21	10487											
CPSF1	29894	broad.mit.edu	37	8	145626349	145626349	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	145626349	A	A	145626349	3	1	159	1	0	0	0	0	1	0	0	0	3826	739	26	4	3955	4	CPSF1	8	145626349	Missense_Mutation	SNP	C	TCGA-B0-5100-01A-01D-1421-08	83037626	145626349	737673	22	10488											
UPF2	26019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	12071445	12071445	+	Silent	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	12071445	G	A	12071445	2	1	159	1	0	0	0	0	0	0	0	1	17016	1252	44	2		2	UPF2	10	12071445	Silent	SNP	G	TCGA-B0-5100-01A-01D-1421-08		12071445	123463302	23	10489											
TBC1D12	23232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96291127	96291127	+	Silent	SNP	A	A	G	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	G	96291127	A	G	96291127	2	3	159	1	0	0	0	0	0	0	0	1	15613	349	13	3		3	TBC1D12	10	96291127	Silent	SNP	A	TCGA-B0-5100-01A-01D-1421-08	84219682	96291127	39243620	24	10490											
PCF11	51585	broad.mit.edu;ucsc.edu	37	11	82878246	82878246	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	C	82878246	C	C	82878246	3	2	159	1	0	0	0	0	1	0	0	0	11580	1435	50	3	1919	3	PCF11	11	82878246	Missense_Mutation	SNP	T	TCGA-B0-5100-01A-01D-1421-08		82878246	52128270	25	10491											
FAM113B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	47629507	47629507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	47629507	G	A	47629507	3	1	159	1	0	0	0	0	1	0	0	0	5406	1087	38	1	663	1	FAM113B	12	47629507	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08		47629507	86222388	26	10492											
KRT83	3889	hgsc.bcm.edu	37	12	52711741	52711743	+	In_Frame_Del	DEL	CTT	CTT	-	rs149269323	by1000genomes	TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	-	52711743	CTT	-	52711741	7	5	159	1	0	1	0	1	0	0	0	0	8504	565	20	0	902	0	KRT83	12	52711741	In_Frame_Del	DEL	CTT	TCGA-B0-5100-01A-01D-1421-08	5082234	52711741	81140154	27	10493											
CNOT2	4848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	70723321	70723321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	T	70723321	G	T	70723321	3	4	159	1	0	0	0	0	1	0	0	0	3621	1377	48	4	371	4	CNOT2	12	70723321	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08	18011580	70723321	63128574	28	10494											
PCDH20	64881	broad.mit.edu;ucsc.edu	37	13	61986058	61986058	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	61986058	A	A	61986058	3	1	159	1	0	0	0	0	1	0	0	0	11522	1377	48	2	685	2	PCDH20	13	61986058	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08		61986058	53183820	29	10495											
FERMT2	10979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	53339598	53339598	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	53339598	T	A	53339598	3	1	159	1	0	0	0	0	1	0	0	0	5825	1696	59	5	911	5	FERMT2	14	53339598	Missense_Mutation	SNP	T	TCGA-B0-5100-01A-01D-1421-08		53339598	54009942	30	10496											
CYP11A1	1583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	74636237	74636237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	G	74636237	A	G	74636237	3	3	159	1	0	0	0	0	1	0	0	0	4146	246	9	3	867	3	CYP11A1	15	74636237	Missense_Mutation	SNP	A	TCGA-B0-5100-01A-01D-1421-08		74636237	27895155	31	10497											
CORO7	79585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4405287	4405287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	4405287	C	A	4405287	3	1	159	1	0	0	0	0	1	0	0	0	3761	637	22	4	13	4	CORO7	16	4405287	Missense_Mutation	SNP	C	TCGA-B0-5100-01A-01D-1421-08		4405287	85949466	32	10498											
KRTAP4-2	85291	broad.mit.edu;hgsc.bcm.edu	37	17	39334330	39334330	+	Silent	SNP	G	G	T	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	T	39334330	G	T	39334330	2	4	159	1	0	0	0	0	0	0	0	1	8558	987	35	4		4	KRTAP4-2	17	39334330	Silent	SNP	G	TCGA-B0-5100-01A-01D-1421-08		39334330	41860880	33	10499											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38949888	38949888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	38949888	G	A	38949888	3	1	159	1	0	0	0	0	1	0	0	0	13781	1087	38	1	2344	1	RYR1	19	38949888	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08		38949888	20179095	34	10500											
PCSK2	5126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	17462428	17462428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	17462428	G	A	17462428	3	1	159	1	0	0	0	0	1	0	0	0	11608	1058	37	1	1676	1	PCSK2	20	17462428	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08		17462428	45563092	35	10501											
KLF8	11279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	56310908	56310908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5100-01A-01D-1421-08	TCGA-B0-5100-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b20bd619-59c9-4e2a-8e64-7bb44eaa75ce	adfc66d6-8278-4574-890d-cb2bb82be8e5	A	56310908	G	A	56310908	3	1	159	1	0	0	0	0	1	0	0	0	8359	1145	40	1	1083	1	KLF8	23	56310908	Missense_Mutation	SNP	G	TCGA-B0-5100-01A-01D-1421-08		56310908	98959652	36	10502											
SLC25A33	84275	broad.mit.edu;hgsc.bcm.edu	37	1	9642417	9642417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	9642417	C	T	9642417	3	4	160	1	0	0	0	0	1	0	0	0	14510	768	27	1	850	1	SLC25A33	1	9642417	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08		9642417	239608204	1	10503											
ARID1A	8289	hgsc.bcm.edu	37	1	27087419	27087420	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	GG	GG	GG	-	GG	GG	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	-	27087420	GG	-	27087419	7	5	160	1	0	1	0	1	0	0	0	0	913	1000	35	0	2011	0	ARID1A	1	27087419	Frame_Shift_Del	DEL	GG	TCGA-B0-5102-01A-01D-1421-08	17445002	27087419	222163202	2	10504											
PHACTR4	65979	broad.mit.edu	37	1	28802704	28802704	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	28802704	T	T	28802704	3	4	160	1	0	0	0	0	1	0	0	0	11819	507	18	2	1583	2	PHACTR4	1	28802704	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08	1715285	28802704	220447917	3	10505											
VCAM1	7412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	101200121	101200121	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	G	101200121	T	G	101200121	3	3	160	1	0	0	0	0	1	0	0	0	17149	1667	58	5	1886	5	VCAM1	1	101200121	Missense_Mutation	SNP	T	TCGA-B0-5102-01A-01D-1421-08	72397417	101200121	148050500	4	10506											
EFNA3	1944	hgsc.bcm.edu	37	1	155057646	155057657	+	In_Frame_Del	DEL	GGGGTGGGCCCC	GGGGTGGGCCCC	-	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	GGGGTGGGCCCC	GGGGTGGGCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	-	155057657	GGGGTGGGCCCC	-	155057646	7	5	160	1	0	1	0	1	0	0	0	0	4954	1232	43	0	214	0	EFNA3	1	155057646	In_Frame_Del	DEL	GGGGTGGGCCCC	TCGA-B0-5102-01A-01D-1421-08	53857525	155057646	94192975	5	10507											
CR1	1378	broad.mit.edu;hgsc.bcm.edu	37	1	207700214	207700214	+	Missense_Mutation	SNP	G	G	C	rs56395307	alternate_allele	TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	C	207700214	G	C	207700214	3	2	160	1	0	0	0	0	1	0	0	0	3842	1203	42	4	1025	4	CR1	1	207700214	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08	52642568	207700214	41550407	6	10508											
NEB	4703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152529113	152529113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	152529113	G	T	152529113	3	4	160	1	0	0	0	0	1	0	0	0	10309	1348	47	4	22201	4	NEB	2	152529113	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08		152529113	90670260	7	10509											
VHL	7428	broad.mit.edu	37	3	10183725	10183725	+	Nonsense_Mutation	SNP	C	A	A	rs5030826		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq;PacBio			Illumina GAIIx	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	10183725	A	A	10183725	4	1	160	1	0	0	0	0	0	1	0	0	17174	893	31	4	196	4	VHL	3	10183725	Nonsense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08		10183725	187838705	8	10510											
SLITRK3	22865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	164905805	164905805	+	Silent	SNP	C	C	G	rs145516007	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	G	164905805	C	G	164905805	2	3	160	1	0	0	0	0	0	0	0	1	14757	639	23	4		4	SLITRK3	3	164905805	Silent	SNP	C	TCGA-B0-5102-01A-01D-1421-08	154722080	164905805	33116625	9	10511											
SERPINI1	5274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	167508254	167508254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	C	167508254	A	C	167508254	3	2	160	1	0	0	0	0	1	0	0	0	14131	11	1	5	351	5	SERPINI1	3	167508254	Missense_Mutation	SNP	A	TCGA-B0-5102-01A-01D-1421-08	2602449	167508254	30514176	10	10512											
TMEM155	132332	hgsc.bcm.edu;ucsc.edu	37	4	122682726	122682726	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	-	122682726	A	-	122682726	7	5	160	1	0	1	0	1	0	0	0	0	16084	131	5	0	221	0	TMEM155	4	122682726	Frame_Shift_Del	DEL	A	TCGA-B0-5102-01A-01D-1421-08		122682726	68471550	11	10513											
FBXW7	55294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	153332528	153332528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	153332528	A	T	153332528	3	4	160	1	0	0	0	0	1	0	0	0	5776	275	10	5	2155	5	FBXW7	4	153332528	Missense_Mutation	SNP	A	TCGA-B0-5102-01A-01D-1421-08	30649802	153332528	37821748	12	10514											
C4orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	184585186	184585186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	184585186	C	T	184585186	3	4	160	1	0	0	0	0	1	0	0	0	2272	797	28	2	168	2	C4orf41	4	184585186	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08	31252658	184585186	6569090	13	10515											
ALDH7A1	501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	125891622	125891622	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	125891622	C	T	125891622	5	4	160	1	0	0	0	0	0	0	1	0	504	550	19	1	553	1	ALDH7A1	5	125891622	Splice_Site	SNP	C	TCGA-B0-5102-01A-01D-1421-08		125891622	55023638	14	10516											
PCDHA5	56143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140202183	140202183	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	140202183	G	T	140202183	4	4	160	1	0	0	0	0	0	1	0	0	11534	1175	41	4	825	4	PCDHA5	5	140202183	Nonsense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08	14310561	140202183	40713077	15	10517											
PCDHAC2	56134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140347848	140347848	+	Silent	SNP	G	G	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	140347848	G	A	140347848	2	1	160	1	0	0	0	0	0	0	0	1	11540	991	35	2		2	PCDHAC2	5	140347848	Silent	SNP	G	TCGA-B0-5102-01A-01D-1421-08	145665	140347848	40567412	16	10518											
PCDHB10	56126	broad.mit.edu;hgsc.bcm.edu	37	5	140573503	140573503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	140573503	G	T	140573503	3	4	160	1	0	0	0	0	1	0	0	0	11542	1145	40	4	1380	4	PCDHB10	5	140573503	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08	225655	140573503	40341757	17	10519	119	2									
PCDHB10	56126	broad.mit.edu;hgsc.bcm.edu	37	5	140573506	140573506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	140573506	C	T	140573506	3	4	160	1	0	0	0	0	1	0	0	0	11542	652	23	1	1383	1	PCDHB10	5	140573506	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08	3	140573506	40341754	18	10520	119	2									
ZBTB12	221527	broad.mit.edu;hgsc.bcm.edu	37	6	31867889	31867889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	31867889	C	A	31867889	3	1	160	1	0	0	0	0	1	0	0	0	17537	912	32	4	189	4	ZBTB12	6	31867889	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08		31867889	139247178	19	10521											
CAPN11	11131	broad.mit.edu;hgsc.bcm.edu	37	6	44141055	44141055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	44141055	C	A	44141055	3	1	160	1	0	0	0	0	1	0	0	0	2626	623	22	4	789	4	CAPN11	6	44141055	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08	12273166	44141055	126974012	20	10522											
SENP6	26054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	76421100	76421100	+	Silent	SNP	A	A	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	76421100	A	T	76421100	2	4	160	1	0	0	0	0	0	0	0	1	14063	262	10	5		5	SENP6	6	76421100	Silent	SNP	A	TCGA-B0-5102-01A-01D-1421-08	32280045	76421100	94693967	21	10523											
PAX4	5078	hgsc.bcm.edu;ucsc.edu	37	7	127252007	127252007	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	-	127252007	A	-	127252007	7	5	160	1	0	1	0	1	0	0	0	0	11488	304	11	0	304	0	PAX4	7	127252007	Frame_Shift_Del	DEL	A	TCGA-B0-5102-01A-01D-1421-08		127252007	31886656	22	10524											
CPA2	1358	broad.mit.edu;ucsc.edu	37	7	129916502	129916502	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	129916502	T	T	129916502	3	4	160	1	0	0	0	0	1	0	0	0	3792	565	20	2	646	2	CPA2	7	129916502	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08	2664495	129916502	29222161	23	10525											
CLU	1191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	27466547	27466547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	27466547	C	T	27466547	3	4	160	1	0	0	0	0	1	0	0	0	3570	652	23	1	1223	1	CLU	8	27466547	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08		27466547	118897475	24	10526											
CDH17	1015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	95183159	95183159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	95183159	G	T	95183159	3	4	160	1	0	0	0	0	1	0	0	0	3104	1203	42	4	1704	4	CDH17	8	95183159	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08	67716612	95183159	51180863	25	10527											
SLC30A8	169026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	118184908	118184909	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	-	118184909	CC	-	118184908	7	5	160	1	0	1	0	1	0	0	0	0	14574	506	18	0	1128	0	SLC30A8	8	118184908	Frame_Shift_Del	DEL	CC	TCGA-B0-5102-01A-01D-1421-08	23001749	118184908	28179114	26	10528											
CA9	768	broad.mit.edu;hgsc.bcm.edu	37	9	35676103	35676103	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	G	35676103	C	G	35676103	3	3	160	1	0	0	0	0	1	0	0	0	2526	623	22	4	661	4	CA9	9	35676103	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08		35676103	105537328	27	10529											
COL15A1	1306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	101777786	101777786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	101777786	G	A	101777786	3	1	160	1	0	0	0	0	1	0	0	0	3674	1261	44	2	1479	2	COL15A1	9	101777786	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08	66101683	101777786	39435645	28	10530											
OR1J2	26740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125273604	125273604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	125273604	C	T	125273604	3	4	160	1	0	0	0	0	1	0	0	0	10967	623	22	2	526	2	OR1J2	9	125273604	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08	23495818	125273604	15939827	29	10531											
LCN9	392399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	138555246	138555246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	C	138555246	A	C	138555246	3	2	160	1	0	0	0	0	1	0	0	0	8694	246	9	5	81	5	LCN9	9	138555246	Missense_Mutation	SNP	A	TCGA-B0-5102-01A-01D-1421-08	13281642	138555246	2658185	30	10532											
OR52K1	390036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4510760	4510760	+	Silent	SNP	G	G	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	4510760	G	A	4510760	2	1	160	1	0	0	0	0	0	0	0	1	11130	1364	48	2		2	OR52K1	11	4510760	Silent	SNP	G	TCGA-B0-5102-01A-01D-1421-08		4510760	130495756	31	10533											
OR51V1	283111	broad.mit.edu;ucsc.edu	37	11	5221093	5221093	+	Missense_Mutation	SNP	C	T	T	rs182727082	by1000genomes	TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	5221093	T	T	5221093	3	4	160	1	0	0	0	0	1	0	0	0	11114	536	19	1	130	1	OR51V1	11	5221093	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08	710333	5221093	129785423	32	10534											
ATP2A2	488	broad.mit.edu;ucsc.edu	37	12	110720427	110720427	+	Splice_Site	SNP	G	C	C	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	C	110720427	C	C	110720427	5	2	160	1	0	0	0	0	0	0	1	0	1137	1275	44	4	143	4	ATP2A2	12	110720427	Splice_Site	SNP	G	TCGA-B0-5102-01A-01D-1421-08		110720427	23131468	33	10535											
PCDH9	5101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	67800364	67800364	+	Silent	SNP	G	G	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	67800364	G	A	67800364	2	1	160	1	0	0	0	0	0	0	0	1	11525	933	33	2		2	PCDH9	13	67800364	Silent	SNP	G	TCGA-B0-5102-01A-01D-1421-08		67800364	47369514	34	10536											
NIN	51199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	51224783	51224783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	51224783	C	T	51224783	3	4	160	1	0	0	0	0	1	0	0	0	10424	797	28	2	3640	2	NIN	14	51224783	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08		51224783	56124757	35	10537											
SPTB	6710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	65289684	65289684	+	Silent	SNP	G	G	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	65289684	G	A	65289684	2	1	160	1	0	0	0	0	0	0	0	1	15130	1219	43	2		2	SPTB	14	65289684	Silent	SNP	G	TCGA-B0-5102-01A-01D-1421-08	14064901	65289684	42059856	36	10538											
PNMA1	9240	hgsc.bcm.edu	37	14	74179715	74179716	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	G	74179716	-	G	74179715	7	5	160	1	0	1	1	0	0	0	0	0	12160	768	27	0	437	0	PNMA1	14	74179715	Frame_Shift_Ins	INS	-	TCGA-B0-5102-01A-01D-1421-08	8890031	74179715	33169825	37	10539											
MLH3	27030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75513873	75513873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	G	75513873	T	G	75513873	3	3	160	1	0	0	0	0	1	0	0	0	9625	1609	56	5	1923	5	MLH3	14	75513873	Missense_Mutation	SNP	T	TCGA-B0-5102-01A-01D-1421-08	1334158	75513873	31835667	38	10540											
DUOX2	50506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45398798	45398798	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	45398798	G	A	45398798	4	1	160	1	0	0	0	0	0	1	0	0	4803	1124	39	1	2849	1	DUOX2	15	45398798	Nonsense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08		45398798	57132594	39	10541											
SPESP1	246777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	69238414	69238414	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	C	69238414	G	C	69238414	3	2	160	1	0	0	0	0	1	0	0	0	15052	1377	48	4	547	4	SPESP1	15	69238414	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08	23839616	69238414	33292978	40	10542											
MESP2	145873	broad.mit.edu	37	15	90321551	90321551	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	90321551	A	A	90321551	3	1	160	1	0	0	0	0	1	0	0	0	9490	1232	43	2	1186	2	MESP2	15	90321551	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08	21083137	90321551	12209841	41	10543											
RHBDF1	64285	hgsc.bcm.edu	37	16	111871	111871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	111871	C	T	111871	3	4	160	1	0	0	0	0	1	0	0	0	13332	652	23	1	1478	1	RHBDF1	16	111871	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08		111871	90242882	42	10544											
TELO2	9894	broad.mit.edu;hgsc.bcm.edu	37	16	1557029	1557029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	G	1557029	A	G	1557029	3	3	160	1	0	0	0	0	1	0	0	0	15769	333	12	3	2269	3	TELO2	16	1557029	Missense_Mutation	SNP	A	TCGA-B0-5102-01A-01D-1421-08	1445158	1557029	88797724	43	10545											
KIAA0430	9665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15706525	15706525	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	C	15706525	G	C	15706525	3	2	160	1	0	0	0	0	1	0	0	0	8184	1280	45	4	1909	4	KIAA0430	16	15706525	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08	14149496	15706525	74648228	44	10546											
BRD7	29117	hgsc.bcm.edu	37	16	50383993	50383994	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	AC	50383994	-	AC	50383993	7	5	160	1	0	1	1	0	0	0	0	0	1507	14	1	0	1478	0	BRD7	16	50383993	Frame_Shift_Ins	INS	-	TCGA-B0-5102-01A-01D-1421-08	34677468	50383993	39970760	45	10547											
HYDIN	54768	broad.mit.edu;hgsc.bcm.edu	37	16	70884503	70884503	+	Silent	SNP	A	A	G	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	G	70884503	A	G	70884503	2	3	160	1	0	0	0	0	0	0	0	1	7474	11	1	3		3	HYDIN	16	70884503	Silent	SNP	A	TCGA-B0-5102-01A-01D-1421-08	20500510	70884503	19470250	46	10548											
PIK3R5	23533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8793400	8793400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	8793400	G	A	8793400	3	1	160	1	0	0	0	0	1	0	0	0	11929	1319	46	2	1989	2	PIK3R5	17	8793400	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08		8793400	72401810	47	10549											
ELSPBP1	64100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	48517560	48517560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	48517560	G	T	48517560	3	4	160	1	0	0	0	0	1	0	0	0	5085	1029	36	4	209	4	ELSPBP1	19	48517560	Missense_Mutation	SNP	G	TCGA-B0-5102-01A-01D-1421-08		48517560	10611423	48	10550											
CACNA1F	778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	49071691	49071691	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	G	49071691	T	G	49071691	3	3	160	1	0	0	0	0	1	0	0	0	2545	1783	62	5	2528	5	CACNA1F	23	49071691	Missense_Mutation	SNP	T	TCGA-B0-5102-01A-01D-1421-08		49071691	106198869	49	10551											
SMC1A	8243	hgsc.bcm.edu	37	X	53430709	53430709	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	G	53430709	C	G	53430709	3	3	160	1	0	0	0	0	1	0	0	0	14794	695	24	4	1436	4	SMC1A	23	53430709	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08	4359018	53430709	101839851	50	10552											
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76813066	76813066	+	Silent	SNP	C	C	T	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	T	76813066	C	T	76813066	2	4	160	1	0	0	0	0	0	0	0	1	1208	465	17	2		2	ATRX	23	76813066	Silent	SNP	C	TCGA-B0-5102-01A-01D-1421-08	23382357	76813066	78457494	51	10553											
GABRQ	55879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151821523	151821523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5102-01A-01D-1421-08	TCGA-B0-5102-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	abea5e3e-705a-4d2c-b207-1ab43767a19b	f74efc75-f8a0-4192-ba8c-22922fc44b5c	A	151821523	C	A	151821523	3	1	160	1	0	0	0	0	1	0	0	0	6182	681	24	4	1712	4	GABRQ	23	151821523	Missense_Mutation	SNP	C	TCGA-B0-5102-01A-01D-1421-08	75008457	151821523	3449037	52	10554											
TRIM46	80128	hgsc.bcm.edu	37	1	155150596	155150597	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	155150597	-	G	155150596	7	5	161	1	0	1	1	0	0	0	0	0	16533	1580	55	0	1050	0	TRIM46	1	155150596	Frame_Shift_Ins	INS	-	TCGA-B0-5104-01A-01D-1421-08		155150596	94100025	1	10555											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186056587	186056587	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	186056587	T	G	186056587	3	3	161	1	0	0	0	0	1	0	0	0	7227	1493	52	5	9411	5	HMCN1	1	186056587	Missense_Mutation	SNP	T	TCGA-B0-5104-01A-01D-1421-08	30905991	186056587	63194034	2	10556											
NAV1	89796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201779747	201779747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	201779747	G	A	201779747	3	1	161	1	0	0	0	0	1	0	0	0	10190	1087	38	1	4809	1	NAV1	1	201779747	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08	15723160	201779747	47470874	3	10557											
PARP1	142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	226551746	226551746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	226551746	A	G	226551746	3	3	161	1	0	0	0	0	1	0	0	0	11461	333	12	3	376	3	PARP1	1	226551746	Missense_Mutation	SNP	A	TCGA-B0-5104-01A-01D-1421-08	24771999	226551746	22698875	4	10558											
LCLAT1	253558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	30785088	30785088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	30785088	G	A	30785088	3	1	161	1	0	0	0	0	1	0	0	0	8684	1290	45	2	569	2	LCLAT1	2	30785088	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08		30785088	212414285	5	10559											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32673959	32673959	+	Silent	SNP	C	C	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	32673959	C	A	32673959	2	1	161	1	0	0	0	0	0	0	0	1	1438	842	30	4		4	BIRC6	2	32673959	Silent	SNP	C	TCGA-B0-5104-01A-01D-1421-08	1888871	32673959	210525414	6	10560											
LBX2	85474	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	74725150	74725150	+	Silent	SNP	C	C	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	74725150	C	T	74725150	2	4	161	1	0	0	0	0	0	0	0	1	8661	697	25	2		2	LBX2	2	74725150	Silent	SNP	C	TCGA-B0-5104-01A-01D-1421-08	42051191	74725150	168474223	7	10561											
DARS	1615	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	136678172	136678172	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	C	136678172	T	C	136678172	5	2	161	1	0	0	0	0	0	0	1	0	4243	1594	55	3	723	3	DARS	2	136678172	Splice_Site	SNP	T	TCGA-B0-5104-01A-01D-1421-08	61953022	136678172	106521201	8	10562											
FSIP2	401024	broad.mit.edu;hgsc.bcm.edu	37	2	186669998	186669998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	186669998	A	T	186669998	3	4	161	1	0	0	0	0	1	0	0	0	6082	246	9	5	16298	5	FSIP2	2	186669998	Missense_Mutation	SNP	A	TCGA-B0-5104-01A-01D-1421-08	49991826	186669998	56529375	9	10563											
ABCA12	26154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	215818763	215818763	+	Silent	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	215818763	G	A	215818763	2	1	161	1	0	0	0	0	0	0	0	1	30	1140	40	1		1	ABCA12	2	215818763	Silent	SNP	G	TCGA-B0-5104-01A-01D-1421-08	29148765	215818763	27380610	10	10564											
IRS1	3667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	227660084	227660084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	227660084	G	A	227660084	3	1	161	1	0	0	0	0	1	0	0	0	7847	1319	46	2	361	2	IRS1	2	227660084	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08	11841321	227660084	15539289	11	10565											
ALPP	250	broad.mit.edu	37	2	233246013	233246013	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	233246013	A	A	233246013	4	1	161	1	0	0	0	0	0	1	0	0	548	547	19	4	1283	4	ALPP	2	233246013	Nonsense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08	5585929	233246013	9953360	12	10566											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52637692	52637694	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	ATT	ATT	ATT	-	ATT	ATT	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	-	52637694	ATT	-	52637692	7	5	161	1	0	1	0	1	0	0	0	0	11498	101	4	0	2332	0	PBRM1	3	52637692	In_Frame_Del	DEL	ATT	TCGA-B0-5104-01A-01D-1421-08		52637692	145384738	13	10567											
PDE12	201626	hgsc.bcm.edu;ucsc.edu	37	3	57542938	57542938	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	-	57542938	A	-	57542938	7	5	161	1	0	1	0	1	0	0	0	0	11639	159	6	0	834	0	PDE12	3	57542938	Frame_Shift_Del	DEL	A	TCGA-B0-5104-01A-01D-1421-08	4905246	57542938	140479492	14	10568	120	2									
PDE12	201626	hgsc.bcm.edu	37	3	57542940	57542940	+	Silent	SNP	T	T	C	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	C	57542940	T	C	57542940	2	2	161	1	0	0	0	0	0	0	0	1	11639	1596	56	3		3	PDE12	3	57542940	Silent	SNP	T	TCGA-B0-5104-01A-01D-1421-08	2	57542940	140479490	15	10569	120	2									
HSD17B11	51170	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	88303419	88303419	+	Silent	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	88303419	G	A	88303419	2	1	161	1	0	0	0	0	0	0	0	1	7387	962	34	2		2	HSD17B11	4	88303419	Silent	SNP	G	TCGA-B0-5104-01A-01D-1421-08		88303419	102850857	16	10570											
EXOSC9	5393	hgsc.bcm.edu;ucsc.edu	37	4	122731151	122731151	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	-	122731151	G	-	122731151	7	5	161	1	0	1	0	1	0	0	0	0	5323	1058	37	0	661	0	EXOSC9	4	122731151	Frame_Shift_Del	DEL	G	TCGA-B0-5104-01A-01D-1421-08	34427732	122731151	68423125	17	10571											
RAPGEF2	9693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	160264133	160264133	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	C	160264133	G	C	160264133	3	2	161	1	0	0	0	0	1	0	0	0	13057	1203	42	4	2496	4	RAPGEF2	4	160264133	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08	37532982	160264133	30890143	18	10572											
CARD6	84674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	40852478	40852478	+	Silent	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	40852478	G	A	40852478	2	1	161	1	0	0	0	0	0	0	0	1	2652	991	35	2		2	CARD6	5	40852478	Silent	SNP	G	TCGA-B0-5104-01A-01D-1421-08		40852478	140062782	19	10573											
GRIA1	2890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	153077687	153077687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	153077687	C	A	153077687	3	1	161	1	0	0	0	0	1	0	0	0	6774	477	17	4	1252	4	GRIA1	5	153077687	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08	112225209	153077687	27837573	20	10574											
C6orf57	135154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	71289120	71289120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	71289120	C	T	71289120	3	4	161	1	0	0	0	0	1	0	0	0	2368	838	29	2	74	2	C6orf57	6	71289120	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08		71289120	99825947	21	10575											
EIF2AK1	27102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	6094303	6094303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	C	6094303	T	C	6094303	3	2	161	1	0	0	0	0	1	0	0	0	4998	1850	64	3	1797	3	EIF2AK1	7	6094303	Missense_Mutation	SNP	T	TCGA-B0-5104-01A-01D-1421-08		6094303	153044360	22	10576											
HDAC9	9734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	18688092	18688092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	18688092	G	T	18688092	3	4	161	1	0	0	0	0	1	0	0	0	7021	1174	41	4	1291	4	HDAC9	7	18688092	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08	12593789	18688092	140450571	23	10577											
ZKSCAN1	7586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99631582	99631582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	99631582	G	T	99631582	3	4	161	1	0	0	0	0	1	0	0	0	17698	1232	43	4	1472	4	ZKSCAN1	7	99631582	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08	80943490	99631582	59507081	24	10578											
CSGALNACT1	55790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	19297429	19297429	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	19297429	C	A	19297429	4	1	161	1	0	0	0	0	0	1	0	0	3940	835	29	4	753	4	CSGALNACT1	8	19297429	Nonsense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08		19297429	127066593	25	10579											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113358405	113358405	+	Silent	SNP	C	C	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	113358405	C	A	113358405	2	1	161	1	0	0	0	0	0	0	0	1	3948	813	29	4		4	CSMD3	8	113358405	Silent	SNP	C	TCGA-B0-5104-01A-01D-1421-08	94060976	113358405	33005617	26	10580											
ZC3H3	23144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144620458	144620458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	144620458	T	G	144620458	3	3	161	1	0	0	0	0	1	0	0	0	17581	1609	56	5	1811	5	ZC3H3	8	144620458	Missense_Mutation	SNP	T	TCGA-B0-5104-01A-01D-1421-08	31262053	144620458	1743564	27	10581											
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	16911671	16911671	+	Missense_Mutation	SNP	C	C	G	rs148491916	alternate_allele	TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	16911671	C	G	16911671	3	3	161	1	0	0	0	0	1	0	0	0	4053	797	28	4	1489	4	CUBN	10	16911671	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08		16911671	118623076	28	10582											
BMS1	9790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	43292488	43292488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	43292488	C	T	43292488	3	4	161	1	0	0	0	0	1	0	0	0	1472	838	29	2	1830	2	BMS1	10	43292488	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08	26380817	43292488	92242259	29	10583											
ERCC6	2074	hgsc.bcm.edu;ucsc.edu	37	10	50732227	50732227	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	-	50732227	C	-	50732227	7	5	161	1	0	1	0	1	0	0	0	0	5219	565	20	0	3300	0	ERCC6	10	50732227	Frame_Shift_Del	DEL	C	TCGA-B0-5104-01A-01D-1421-08	7439739	50732227	84802520	30	10584	121	2									
ERCC6	2074	hgsc.bcm.edu	37	10	50732231	50732231	+	Silent	SNP	C	C	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	50732231	C	T	50732231	2	4	161	1	0	0	0	0	0	0	0	1	5219	912	32	2		2	ERCC6	10	50732231	Silent	SNP	C	TCGA-B0-5104-01A-01D-1421-08	4	50732231	84802516	31	10585	121	2									
NRAP	4892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	115356916	115356916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	115356916	T	G	115356916	3	3	161	1	0	0	0	0	1	0	0	0	10645	1406	49	5	856	5	NRAP	10	115356916	Missense_Mutation	SNP	T	TCGA-B0-5104-01A-01D-1421-08	64624685	115356916	20177831	32	10586											
ZNF215	7762	broad.mit.edu;ucsc.edu	37	11	6977426	6977426	+	Silent	SNP	C	A	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	6977426	A	A	6977426	2	1	161	1	0	0	0	0	0	0	0	1	17783	668	24	4		4	ZNF215	11	6977426	Silent	SNP	C	TCGA-B0-5104-01A-01D-1421-08		6977426	128029090	33	10587											
C11orf30	56946	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	76256949	76256949	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	76256949	C	G	76256949	3	3	161	1	0	0	0	0	1	0	0	0	1638	796	28	4	3456	4	C11orf30	11	76256949	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08	69279523	76256949	58749567	34	10588											
DLAT	1737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111915861	111915861	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	111915861	G	A	111915861	5	1	161	1	0	0	0	0	0	0	1	0	4551	1014	35	2	1231	2	DLAT	11	111915861	Splice_Site	SNP	G	TCGA-B0-5104-01A-01D-1421-08	35658912	111915861	23090655	35	10589	122	2									
DLAT	1737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111915865	111915865	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	111915865	C	G	111915865	3	3	161	1	0	0	0	0	1	0	0	0	4551	855	30	4	1235	4	DLAT	11	111915865	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08	4	111915865	23090651	36	10590	122	2									
VWF	7450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6127762	6127762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	C	6127762	T	C	6127762	3	2	161	1	0	0	0	0	1	0	0	0	17258	1696	59	3	3719	3	VWF	12	6127762	Missense_Mutation	SNP	T	TCGA-B0-5104-01A-01D-1421-08		6127762	127724133	37	10591											
ADAMTS20	80070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	43771275	43771275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	43771275	G	A	43771275	3	1	161	1	0	0	0	0	1	0	0	0	266	1057	37	1	875	1	ADAMTS20	12	43771275	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08	37643513	43771275	90080620	38	10592											
RND1	27289	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49251928	49251928	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	49251928	A	T	49251928	3	4	161	1	0	0	0	0	1	0	0	0	13432	333	12	5	152	5	RND1	12	49251928	Missense_Mutation	SNP	A	TCGA-B0-5104-01A-01D-1421-08	5480653	49251928	84599967	39	10593											
SCYL2	55681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100704845	100704845	+	Silent	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	100704845	G	A	100704845	2	1	161	1	0	0	0	0	0	0	0	1	13961	1310	46	2		2	SCYL2	12	100704845	Silent	SNP	G	TCGA-B0-5104-01A-01D-1421-08	51452917	100704845	33147050	40	10594											
SDSL	113675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113865886	113865886	+	Silent	SNP	T	T	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	113865886	T	A	113865886	2	1	161	1	0	0	0	0	0	0	0	1	13989	1567	55	5		5	SDSL	12	113865886	Silent	SNP	T	TCGA-B0-5104-01A-01D-1421-08	13161041	113865886	19986009	41	10595											
RNASE11	122651	hgsc.bcm.edu;ucsc.edu	37	14	21052170	21052170	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	-	21052170	T	-	21052170	7	5	161	1	0	1	0	1	0	0	0	0	13414	1493	52	0	139	0	RNASE11	14	21052170	Frame_Shift_Del	DEL	T	TCGA-B0-5104-01A-01D-1421-08		21052170	86297370	42	10596											
DHRS4	10901	broad.mit.edu;hgsc.bcm.edu	37	14	24424292	24424292	+	Silent	SNP	G	G	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	24424292	G	T	24424292	2	4	161	1	0	0	0	0	0	0	0	1	4494	1335	47	4		4	DHRS4	14	24424292	Silent	SNP	G	TCGA-B0-5104-01A-01D-1421-08	3372122	24424292	82925248	43	10597											
DACT1	51339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	59112841	59112841	+	Silent	SNP	C	C	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	59112841	C	T	59112841	2	4	161	1	0	0	0	0	0	0	0	1	4224	477	17	2		2	DACT1	14	59112841	Silent	SNP	C	TCGA-B0-5104-01A-01D-1421-08	34688549	59112841	48236699	44	10598											
PSMC1	5700	broad.mit.edu	37	14	90730104	90730104	+	Silent	SNP	T	G	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	90730104	G	G	90730104	2	3	161	1	0	0	0	0	0	0	0	1	12695	1567	55	5		5	PSMC1	14	90730104	Silent	SNP	T	TCGA-B0-5104-01A-01D-1421-08	31617263	90730104	16619436	45	10599											
TGM5	9333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43525807	43525807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	43525807	C	G	43525807	3	3	161	1	0	0	0	0	1	0	0	0	15845	855	30	4	216	4	TGM5	15	43525807	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08		43525807	59005585	46	10600											
CGNL1	84952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	57816796	57816796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	57816796	G	T	57816796	3	4	161	1	0	0	0	0	1	0	0	0	3306	991	35	4	2928	4	CGNL1	15	57816796	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08	14290989	57816796	44714596	47	10601											
ADAM10	102	broad.mit.edu;ucsc.edu	37	15	58938360	58938360	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	58938360	T	T	58938360	3	4	161	1	0	0	0	0	1	0	0	0	234	681	24	2	1661	2	ADAM10	15	58938360	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08	1121564	58938360	43593032	48	10602											
CCNB2	9133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59409521	59409521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	59409521	C	T	59409521	3	4	161	1	0	0	0	0	1	0	0	0	2915	710	25	2	955	2	CCNB2	15	59409521	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08	471161	59409521	43121871	49	10603											
UBN1	29855	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4924865	4924865	+	Silent	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	4924865	G	A	4924865	2	1	161	1	0	0	0	0	0	0	0	1	16904	1074	38	1		1	UBN1	16	4924865	Silent	SNP	G	TCGA-B0-5104-01A-01D-1421-08		4924865	85429888	50	10604											
SH2B1	25970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28878735	28878735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	28878735	G	T	28878735	3	4	161	1	0	0	0	0	1	0	0	0	14240	933	33	4	1029	4	SH2B1	16	28878735	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08	23953870	28878735	61476018	51	10605											
CIAPIN1	57019	hgsc.bcm.edu	37	16	57468040	57468041	+	Frame_Shift_Ins	INS	-	-	TACA	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	TACA	57468041	-	TACA	57468040	7	5	161	1	0	1	1	0	0	0	0	0	3421	1299	45	0	486	0	CIAPIN1	16	57468040	Frame_Shift_Ins	INS	-	TCGA-B0-5104-01A-01D-1421-08	28589305	57468040	32886713	52	10606											
MYH13	8735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10225010	10225010	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	10225010	C	A	10225010	4	1	161	1	0	0	0	0	0	1	0	0	10039	893	31	4	2938	4	MYH13	17	10225010	Nonsense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08		10225010	70970200	53	10607											
MMP28	79148	broad.mit.edu	37	17	34093633	34093633	+	Silent	SNP	G	A	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	34093633	A	A	34093633	2	1	161	1	0	0	0	0	0	0	0	1	9672	1252	44	2		2	MMP28	17	34093633	Silent	SNP	G	TCGA-B0-5104-01A-01D-1421-08	23868623	34093633	47101577	54	10608											
G6PC	2538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41052960	41052960	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	41052960	T	A	41052960	3	1	161	1	0	0	0	0	1	0	0	0	6150	1754	61	5	69	5	G6PC	17	41052960	Missense_Mutation	SNP	T	TCGA-B0-5104-01A-01D-1421-08	6959327	41052960	40142250	55	10609											
PPM1E	22843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57058007	57058007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	57058007	C	T	57058007	3	4	161	1	0	0	0	0	1	0	0	0	12348	565	20	2	1909	2	PPM1E	17	57058007	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08	16005047	57058007	24137203	56	10610											
RAB37	326624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72739479	72739479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	72739479	G	T	72739479	3	4	161	1	0	0	0	0	1	0	0	0	12940	1246	43	4	687	4	RAB37	17	72739479	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08	15681472	72739479	8455731	57	10611											
TSEN54	283989	broad.mit.edu	37	17	73518055	73518055	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	73518055	G	G	73518055	3	3	161	1	0	0	0	0	1	0	0	0	16626	1783	62	5	923	5	TSEN54	17	73518055	Missense_Mutation	SNP	T	TCGA-B0-5104-01A-01D-1421-08	778576	73518055	7677155	58	10612											
DSG3	1830	broad.mit.edu;ucsc.edu	37	18	29046612	29046612	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	29046612	T	T	29046612	3	4	161	1	0	0	0	0	1	0	0	0	4780	1377	48	4	1573	4	DSG3	18	29046612	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08		29046612	49030636	59	10613											
GIPC3	126326	broad.mit.edu;hgsc.bcm.edu	37	19	3586520	3586520	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	3586520	A	T	3586520	4	4	161	1	0	0	0	0	0	1	0	0	6401	131	5	5	259	5	GIPC3	19	3586520	Nonsense_Mutation	SNP	A	TCGA-B0-5104-01A-01D-1421-08		3586520	55542463	60	10614											
TYK2	7297	broad.mit.edu;hgsc.bcm.edu	37	19	10475698	10475698	+	Silent	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	10475698	G	A	10475698	2	1	161	1	0	0	0	0	0	0	0	1	16822	1252	44	2		2	TYK2	19	10475698	Silent	SNP	G	TCGA-B0-5104-01A-01D-1421-08	6889178	10475698	48653285	61	10615											
XRN2	22803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	21336744	21336744	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	C	21336744	G	C	21336744	3	2	161	1	0	0	0	0	1	0	0	0	17472	1377	48	4	2133	4	XRN2	20	21336744	Missense_Mutation	SNP	G	TCGA-B0-5104-01A-01D-1421-08		21336744	41688776	62	10616											
TFAP2C	7022	broad.mit.edu	37	20	55206674	55206674	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	55206674	A	A	55206674	3	1	161	1	0	0	0	0	1	0	0	0	15801	535	19	4	468	4	TFAP2C	20	55206674	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08	33869930	55206674	7818846	63	10617											
SLC17A9	63910	broad.mit.edu	37	20	61594983	61594983	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	61594983	A	A	61594983	3	1	161	1	0	0	0	0	1	0	0	0	14437	1551	54	5	799	5	SLC17A9	20	61594983	Missense_Mutation	SNP	T	TCGA-B0-5104-01A-01D-1421-08	6388309	61594983	1430537	64	10618											
KCNJ15	3772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	39671523	39671523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	G	39671523	C	G	39671523	3	3	161	1	0	0	0	0	1	0	0	0	8056	913	32	4	342	4	KCNJ15	21	39671523	Missense_Mutation	SNP	C	TCGA-B0-5104-01A-01D-1421-08		39671523	8458372	65	10619											
SLC16A8	23539	broad.mit.edu;hgsc.bcm.edu	37	22	38476983	38476983	+	Silent	SNP	G	G	A	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	A	38476983	G	A	38476983	2	1	161	1	0	0	0	0	0	0	0	1	14427	1190	42	2		2	SLC16A8	22	38476983	Silent	SNP	G	TCGA-B0-5104-01A-01D-1421-08		38476983	12827583	66	10620											
OPHN1	4983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	67273543	67273543	+	Silent	SNP	C	C	T	novel		TCGA-B0-5104-01A-01D-1421-08	TCGA-B0-5104-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c93a5a8-8c37-4295-b566-cb15edd464a4	d7121c44-3327-411d-a772-ce8d49e3c031	T	67273543	C	T	67273543	2	4	161	1	0	0	0	0	0	0	0	1	10882	796	28	2		2	OPHN1	23	67273543	Silent	SNP	C	TCGA-B0-5104-01A-01D-1421-08		67273543	87997017	67	10621											
VHL	7428	hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	A	rs5030807	bycluster	TCGA-B0-5104-01A-01W-1475-10	TCGA-B0-5104-11A-01W-1475-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	614ee01f-3f1c-4241-8d9c-b6dee2649f1e	1102ff69-bd41-4e6d-9b0d-9e19bd3c3dbb	A	10183797	T	A	10183797	3	1	162	1	0	0	0	0	1	0	0	0	17174	1551	54	5	268	5	VHL	3	10183797	Missense_Mutation	SNP	T	TCGA-B0-5104-01A-01W-1475-10		10183797	187838633	1	10622											
COL8A2	1296	hgsc.bcm.edu	37	1	36563461	36563462	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	36563462	-	G	36563461	7	5	163	1	0	1	1	0	0	0	0	0	3708	1567	55	0	294	0	COL8A2	1	36563461	Frame_Shift_Ins	INS	-	TCGA-B0-5106-01A-01D-1421-08		36563461	212687160	1	10623											
ZSWIM5	57643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	45506168	45506168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	45506168	G	T	45506168	3	4	163	1	0	0	0	0	1	0	0	0	18256	1174	41	4	1937	4	ZSWIM5	1	45506168	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	8942707	45506168	203744453	2	10624											
GLIS1	148979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	53972295	53972295	+	Silent	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	53972295	G	T	53972295	2	4	163	1	0	0	0	0	0	0	0	1	6452	987	35	4		4	GLIS1	1	53972295	Silent	SNP	G	TCGA-B0-5106-01A-01D-1421-08	8466127	53972295	195278326	3	10625											
LPPR4	9890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	99771417	99771417	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	99771417	A	T	99771417	3	4	163	1	0	0	0	0	1	0	0	0	8934	301	11	5	1169	5	LPPR4	1	99771417	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	45799122	99771417	149479204	4	10626											
CDC14A	8556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100928332	100928332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	100928332	T	C	100928332	3	2	163	1	0	0	0	0	1	0	0	0	3058	1522	53	3	767	3	CDC14A	1	100928332	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	1156915	100928332	148322289	5	10627											
HBXIP	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110948984	110948984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	110948984	A	G	110948984	3	3	163	1	0	0	0	0	1	0	0	0	6995	101	4	3	234	3	HBXIP	1	110948984	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	10020652	110948984	138301637	6	10628											
GON4L	54856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155730387	155730387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	155730387	G	T	155730387	3	4	163	1	0	0	0	0	1	0	0	0	6579	1000	35	4	1801	4	GON4L	1	155730387	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	44781403	155730387	93520234	7	10629											
C1orf129	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	170965678	170965678	+	Silent	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	170965678	G	T	170965678	2	4	163	1	0	0	0	0	0	0	0	1	1998	1277	45	4		4	C1orf129	1	170965678	Silent	SNP	G	TCGA-B0-5106-01A-01D-1421-08	15235291	170965678	78284943	8	10630											
EPT1	85465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	26587787	26587787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	26587787	G	A	26587787	3	1	163	1	0	0	0	0	1	0	0	0	5201	1290	45	2	224	2	EPT1	2	26587787	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08		26587787	216611586	9	10631											
SPTBN1	6711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	54891784	54891784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	54891784	T	A	54891784	3	1	163	1	0	0	0	0	1	0	0	0	15131	1432	50	5	6941	5	SPTBN1	2	54891784	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	28303997	54891784	188307589	10	10632											
ANKRD39	51239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	97514102	97514102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	97514102	T	C	97514102	3	2	163	1	0	0	0	0	1	0	0	0	668	1609	56	3	67	3	ANKRD39	2	97514102	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	42622318	97514102	145685271	11	10633											
POTEE	445582	broad.mit.edu	37	2	131995769	131995769	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	131995769	C	C	131995769	3	2	163	1	0	0	0	0	1	0	0	0	12271	11	1	5	1230	5	POTEE	2	131995769	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	34481667	131995769	111203604	12	10634											
PLCD4	84812	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219498885	219498885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	219498885	T	C	219498885	3	2	163	1	0	0	0	0	1	0	0	0	12040	1580	55	3	1706	3	PLCD4	2	219498885	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	87503116	219498885	23700488	13	10635											
ALPI	248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	233321772	233321772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	233321772	C	A	233321772	3	1	163	1	0	0	0	0	1	0	0	0	543	739	26	4	478	4	ALPI	2	233321772	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08	13822887	233321772	9877601	14	10636											
UGT1A8	54576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234526875	234526875	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	234526875	C	A	234526875	4	1	163	1	0	0	0	0	0	1	0	0	16963	747	26	4	524	4	UGT1A8	2	234526875	Nonsense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08	1205103	234526875	8672498	15	10637											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183867	10183867	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454;Illumina Miseq;PacBio			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	10183867	C	A	10183867	4	1	163	1	0	0	0	0	0	1	0	0	17174	518	18	4	338	4	VHL	3	10183867	Nonsense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08		10183867	187838563	16	10638											
NUP210	23225	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	13429823	13429823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	13429823	T	A	13429823	3	1	163	1	0	0	0	0	1	0	0	0	10767	1464	51	5	5143	5	NUP210	3	13429823	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	3245956	13429823	184592607	17	10639											
XIRP1	165904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	39225988	39225988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	39225988	G	A	39225988	3	1	163	1	0	0	0	0	1	0	0	0	17441	1294	45	2	586	2	XIRP1	3	39225988	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	25796165	39225988	158796442	18	10640	123	2									
XIRP1	165904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	39225989	39225989	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	39225989	A	T	39225989	3	4	163	1	0	0	0	0	1	0	0	0	17441	333	12	5	587	5	XIRP1	3	39225989	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	1	39225989	158796441	19	10641	123	2									
HTT	3064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	3138012	3138012	+	Silent	SNP	A	A	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	3138012	A	G	3138012	2	3	163	1	0	0	0	0	0	0	0	1	7464	69	3	3		3	HTT	4	3138012	Silent	SNP	A	TCGA-B0-5106-01A-01D-1421-08		3138012	188016264	20	10642											
DHX15	1665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	24541862	24541862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	24541862	T	A	24541862	3	1	163	1	0	0	0	0	1	0	0	0	4503	1435	50	5	752	5	DHX15	4	24541862	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	21403850	24541862	166612414	21	10643											
NPFFR2	10886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	73013490	73013490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	73013490	G	A	73013490	3	1	163	1	0	0	0	0	1	0	0	0	10585	1348	47	2	1550	2	NPFFR2	4	73013490	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	48471628	73013490	118140786	22	10644											
TACR3	6870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	104510994	104510994	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	104510994	G	C	104510994	3	2	163	1	0	0	0	0	1	0	0	0	15519	1232	43	4	158	4	TACR3	4	104510994	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	31497504	104510994	86643282	23	10645											
PALLD	23022	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	169633073	169633073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	169633073	C	A	169633073	3	1	163	1	0	0	0	0	1	0	0	0	11414	579	20	4	1997	4	PALLD	4	169633073	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08	65122079	169633073	21521203	24	10646											
IRX1	79192	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	3599432	3599432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	3599432	C	A	3599432	3	1	163	1	0	0	0	0	1	0	0	0	7850	595	21	4	376	4	IRX1	5	3599432	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08		3599432	177315828	25	10647											
PHF15	23338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	133887864	133887864	+	Silent	SNP	T	T	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	133887864	T	C	133887864	2	2	163	1	0	0	0	0	0	0	0	1	11833	1567	55	3		3	PHF15	5	133887864	Silent	SNP	T	TCGA-B0-5106-01A-01D-1421-08	130288432	133887864	47027396	26	10648											
PCDHA5	56143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140203675	140203675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	140203675	G	T	140203675	3	4	163	1	0	0	0	0	1	0	0	0	11534	1029	36	4	2317	4	PCDHA5	5	140203675	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	6315811	140203675	40711585	27	10649											
PCDHGA10	56106	broad.mit.edu	37	5	140794506	140794506	+	Silent	SNP	C	T	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	140794506	T	T	140794506	2	4	163	1	0	0	0	0	0	0	0	1	11558	639	23	1		1	PCDHGA10	5	140794506	Silent	SNP	C	TCGA-B0-5106-01A-01D-1421-08	590831	140794506	40120754	28	10650											
MRPL22	29093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	154330404	154330404	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	154330404	A	T	154330404	3	4	163	1	0	0	0	0	1	0	0	0	9795	159	6	5	111	5	MRPL22	5	154330404	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	13535898	154330404	26584856	29	10651											
FLT4	2324	hgsc.bcm.edu;ucsc.edu	37	5	180039595	180039600	+	In_Frame_Del	DEL	TCAGCA	TCAGCA	-	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	TCAGCA	TCAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	-	180039600	TCAGCA	-	180039595	7	5	163	1	0	1	0	1	0	0	0	0	5951	1783	62	0	671	0	FLT4	5	180039595	In_Frame_Del	DEL	TCAGCA	TCGA-B0-5106-01A-01D-1421-08	25709191	180039595	875665	30	10652											
PHACTR1	221692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	13206174	13206174	+	Silent	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	13206174	G	A	13206174	2	1	163	1	0	0	0	0	0	0	0	1	11816	933	33	2		2	PHACTR1	6	13206174	Silent	SNP	G	TCGA-B0-5106-01A-01D-1421-08		13206174	157908893	31	10653											
SLC17A1	6568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	25811911	25811911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	25811911	T	A	25811911	3	1	163	1	0	0	0	0	1	0	0	0	14429	1783	62	5	434	5	SLC17A1	6	25811911	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	12605737	25811911	145303156	32	10654											
SLC44A4	80736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	31833744	31833744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	31833744	G	T	31833744	3	4	163	1	0	0	0	0	1	0	0	0	14651	1000	35	4	771	4	SLC44A4	6	31833744	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	6021833	31833744	139281323	33	10655											
CUL9	23113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43170869	43170869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	43170869	G	T	43170869	3	4	163	1	0	0	0	0	1	0	0	0	4063	971	34	4	3842	4	CUL9	6	43170869	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	11337125	43170869	127944198	34	10656											
TSPYL1	7259	hgsc.bcm.edu;ucsc.edu	37	6	116599803	116599804	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	-	116599804	TT	-	116599803	7	5	163	1	0	1	0	1	0	0	0	0	16671	1606	56	0	126	0	TSPYL1	6	116599803	Frame_Shift_Del	DEL	TT	TCGA-B0-5106-01A-01D-1421-08	73428934	116599803	54515264	35	10657											
STX7	8417	broad.mit.edu;hgsc.bcm.edu	37	6	132785212	132785212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	132785212	T	A	132785212	3	1	163	1	0	0	0	0	1	0	0	0	15362	1522	53	5	180	5	STX7	6	132785212	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	16185409	132785212	38329855	36	10658	124	2									
STX7	8417	broad.mit.edu;hgsc.bcm.edu	37	6	132785213	132785213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	132785213	A	T	132785213	3	4	163	1	0	0	0	0	1	0	0	0	15362	463	16	5	181	5	STX7	6	132785213	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	1	132785213	38329854	37	10659	124	2									
MAP7	9053	broad.mit.edu;hgsc.bcm.edu	37	6	136683700	136683700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	136683700	C	A	136683700	3	1	163	1	0	0	0	0	1	0	0	0	9273	681	24	4	867	4	MAP7	6	136683700	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08	3898487	136683700	34431367	38	10660											
UTRN	7402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	144812074	144812074	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	144812074	C	G	144812074	3	3	163	1	0	0	0	0	1	0	0	0	17115	644	23	4	4395	4	UTRN	6	144812074	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08	8128374	144812074	26302993	39	10661											
AKAP12	9590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	151670459	151670459	+	Silent	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	151670459	C	A	151670459	2	1	163	1	0	0	0	0	0	0	0	1	448	581	21	4		4	AKAP12	6	151670459	Silent	SNP	C	TCGA-B0-5106-01A-01D-1421-08	6858385	151670459	19444608	40	10662											
MRPL18	29074	broad.mit.edu	37	6	160218317	160218317	+	Splice_Site	SNP	A	C	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	160218317	C	C	160218317	5	2	163	1	0	0	0	0	0	0	1	0	9790	434	15	5	248	5	MRPL18	6	160218317	Splice_Site	SNP	A	TCGA-B0-5106-01A-01D-1421-08	8547858	160218317	10896750	41	10663											
EVX1	2128	broad.mit.edu;ucsc.edu	37	7	27282680	27282680	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	27282680	G	G	27282680	3	3	163	1	0	0	0	0	1	0	0	0	5296	912	32	4	33	4	EVX1	7	27282680	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08		27282680	131855983	42	10664											
PARP12	64761	broad.mit.edu	37	7	139741631	139741631	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	139741631	A	A	139741631	3	1	163	1	0	0	0	0	1	0	0	0	11464	710	25	4	1138	4	PARP12	7	139741631	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08	112458951	139741631	19397032	43	10665											
GIMAP8	155038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150164190	150164190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	150164190	G	A	150164190	3	1	163	1	0	0	0	0	1	0	0	0	6392	1116	39	1	406	1	GIMAP8	7	150164190	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	10422559	150164190	8974473	44	10666											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110530496	110530496	+	Silent	SNP	T	T	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	110530496	T	A	110530496	2	1	163	1	0	0	0	0	0	0	0	1	11979	1799	63	5		5	PKHD1L1	8	110530496	Silent	SNP	T	TCGA-B0-5106-01A-01D-1421-08		110530496	35833526	45	10667											
PLEC	5339	broad.mit.edu	37	8	145004392	145004392	+	Silent	SNP	G	A	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	145004392	A	A	145004392	2	1	163	1	0	0	0	0	0	0	0	1	12059	962	34	2		2	PLEC	8	145004392	Silent	SNP	G	TCGA-B0-5106-01A-01D-1421-08	34473896	145004392	1359630	46	10668											
GRHPR	9380	hgsc.bcm.edu	37	9	37424907	37424908	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	GG	37424908	-	GG	37424907	7	5	163	1	0	1	1	0	0	0	0	0	6773	768	27	0	155	0	GRHPR	9	37424907	Frame_Shift_Ins	INS	-	TCGA-B0-5106-01A-01D-1421-08		37424907	103788524	47	10669											
ZCCHC6	79670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	88960584	88960584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	88960584	C	A	88960584	3	1	163	1	0	0	0	0	1	0	0	0	17604	695	24	4	3764	4	ZCCHC6	9	88960584	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08	51535677	88960584	52252847	48	10670											
NIPSNAP3B	55335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	107528730	107528730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	107528730	T	C	107528730	3	2	163	1	0	0	0	0	1	0	0	0	10438	1609	56	3	191	3	NIPSNAP3B	9	107528730	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	18568146	107528730	33684701	49	10671											
DDX50	79009	hgsc.bcm.edu;ucsc.edu	37	10	70706119	70706128	+	Frame_Shift_Del	DEL	TGATTCCGAC	TGATTCCGAC	-	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	TGATTCCGAC	TGATTCCGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	-	70706128	TGATTCCGAC	-	70706119	7	5	163	1	0	1	0	1	0	0	0	0	4370	1461	51	0	2005	0	DDX50	10	70706119	Frame_Shift_Del	DEL	TGATTCCGAC	TCGA-B0-5106-01A-01D-1421-08		70706119	64828628	50	10672											
HECTD2	143279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	93220253	93220253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	93220253	C	T	93220253	3	4	163	1	0	0	0	0	1	0	0	0	7047	855	30	2	348	2	HECTD2	10	93220253	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08	22514134	93220253	42314494	51	10673											
NT5C2	22978	hgsc.bcm.edu;ucsc.edu	37	10	104934672	104934673	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	-	104934673	AT	-	104934672	7	5	163	1	0	1	0	1	0	0	0	0	10694	217	8	0	1709	0	NT5C2	10	104934672	Frame_Shift_Del	DEL	AT	TCGA-B0-5106-01A-01D-1421-08	11714419	104934672	30600075	52	10674											
MUC5B	727897	broad.mit.edu;hgsc.bcm.edu	37	11	1264224	1264224	+	Silent	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	1264224	C	A	1264224	2	1	163	1	0	0	0	0	0	0	0	1	9986	610	22	4		4	MUC5B	11	1264224	Silent	SNP	C	TCGA-B0-5106-01A-01D-1421-08		1264224	133742292	53	10675											
SLC3A2	6520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62650443	62650443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	62650443	A	G	62650443	3	3	163	1	0	0	0	0	1	0	0	0	14640	188	7	3	1087	3	SLC3A2	11	62650443	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	61386219	62650443	72356073	54	10676											
YAP1	10413	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	102100588	102100588	+	Silent	SNP	T	T	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	102100588	T	C	102100588	2	2	163	1	0	0	0	0	0	0	0	1	17478	1838	64	3		3	YAP1	11	102100588	Silent	SNP	T	TCGA-B0-5106-01A-01D-1421-08	39450145	102100588	32905928	55	10677											
HSPA8	3312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	122931841	122931841	+	Silent	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	122931841	G	A	122931841	2	1	163	1	0	0	0	0	0	0	0	1	7423	1335	47	2		2	HSPA8	11	122931841	Silent	SNP	G	TCGA-B0-5106-01A-01D-1421-08	20831253	122931841	12074675	56	10678											
ZBTB44	29068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	130131043	130131043	+	Silent	SNP	A	A	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	130131043	A	T	130131043	2	4	163	1	0	0	0	0	0	0	0	1	17557	175	7	5		5	ZBTB44	11	130131043	Silent	SNP	A	TCGA-B0-5106-01A-01D-1421-08	7199202	130131043	4875473	57	10679											
PTPN11	5781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	112891015	112891015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	112891015	C	T	112891015	3	4	163	1	0	0	0	0	1	0	0	0	12791	913	32	2	363	2	PTPN11	12	112891015	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08		112891015	20960880	58	10680											
SUDS3	64426	hgsc.bcm.edu	37	12	118839609	118839609	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	-	118839609	T	-	118839609	7	5	163	1	0	1	0	1	0	0	0	0	15379	1580	55	0	689	0	SUDS3	12	118839609	Frame_Shift_Del	DEL	T	TCGA-B0-5106-01A-01D-1421-08	5948594	118839609	15012286	59	10681											
PITPNM2	57605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123481921	123481921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	123481921	G	T	123481921	3	4	163	1	0	0	0	0	1	0	0	0	11958	991	35	4	2690	4	PITPNM2	12	123481921	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	4642312	123481921	10369974	60	10682											
PAN3	255967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	28844883	28844883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	28844883	C	A	28844883	3	1	163	1	0	0	0	0	1	0	0	0	11422	594	21	4	1888	4	PAN3	13	28844883	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08		28844883	86324995	61	10683											
UCHL3	7347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	76140954	76140954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	76140954	G	A	76140954	3	1	163	1	0	0	0	0	1	0	0	0	16933	1319	46	2	321	2	UCHL3	13	76140954	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	47296071	76140954	39028924	62	10684											
PSMC6	5706	broad.mit.edu;hgsc.bcm.edu	37	14	53187597	53187597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	53187597	G	A	53187597	3	1	163	1	0	0	0	0	1	0	0	0	12701	1349	47	2	880	2	PSMC6	14	53187597	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08		53187597	54161943	63	10685											
FERMT2	10979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	53417220	53417220	+	Missense_Mutation	SNP	G	G	A	rs147527926	byfrequency	TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	53417220	G	A	53417220	3	1	163	1	0	0	0	0	1	0	0	0	5825	1348	47	2	2068	2	FERMT2	14	53417220	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	229623	53417220	53932320	64	10686											
NDN	4692	broad.mit.edu;hgsc.bcm.edu	37	15	23932263	23932263	+	Silent	SNP	C	C	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	23932263	C	T	23932263	2	4	163	1	0	0	0	0	0	0	0	1	10254	523	19	1		1	NDN	15	23932263	Silent	SNP	C	TCGA-B0-5106-01A-01D-1421-08		23932263	78599129	65	10687											
LINGO1	84894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	77907673	77907673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	77907673	G	C	77907673	3	2	163	1	0	0	0	0	1	0	0	0	8821	1194	42	4	1290	4	LINGO1	15	77907673	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	53975410	77907673	24623719	66	10688											
DNAJA4	55466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	78565450	78565450	+	Silent	SNP	A	A	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	78565450	A	G	78565450	2	3	163	1	0	0	0	0	0	0	0	1	4616	378	14	3		3	DNAJA4	15	78565450	Silent	SNP	A	TCGA-B0-5106-01A-01D-1421-08	657777	78565450	23965942	67	10689											
AMDHD2	51005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2579481	2579481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	2579481	G	A	2579481	3	1	163	1	0	0	0	0	1	0	0	0	568	1145	40	1	1275	1	AMDHD2	16	2579481	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08		2579481	87775272	68	10690											
NFAT5	10725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69727140	69727140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	69727140	C	A	69727140	3	1	163	1	0	0	0	0	1	0	0	0	10367	827	29	4	3462	4	NFAT5	16	69727140	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08	67147659	69727140	20627613	69	10691											
OR1D2	4991	broad.mit.edu;hgsc.bcm.edu	37	17	2995985	2995985	+	Nonsense_Mutation	SNP	G	G	T	rs140264769		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	2995985	G	T	2995985	4	4	163	1	0	0	0	0	0	1	0	0	10960	1024	36	4	635	4	OR1D2	17	2995985	Nonsense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08		2995985	78199225	70	10692											
TIAF1	9220	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27401024	27401024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	27401024	G	T	27401024	3	4	163	1	0	0	0	0	1	0	0	0	15900	1232	43	4	157	4	TIAF1	17	27401024	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	24405039	27401024	53794186	71	10693											
TUBG1	7283	broad.mit.edu;hgsc.bcm.edu	37	17	40765980	40765980	+	Silent	SNP	C	C	T	rs145699955		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	40765980	C	T	40765980	2	4	163	1	0	0	0	0	0	0	0	1	16776	813	29	2		2	TUBG1	17	40765980	Silent	SNP	C	TCGA-B0-5106-01A-01D-1421-08	13364956	40765980	40429230	72	10694											
NAT9	26151	broad.mit.edu;ucsc.edu	37	17	72769778	72769778	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	72769778	G	G	72769778	3	3	163	1	0	0	0	0	1	0	0	0	10189	304	11	3	516	3	NAT9	17	72769778	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	32003798	72769778	8425432	73	10695											
FHOD3	80206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	34156435	34156435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	34156435	A	G	34156435	3	3	163	1	0	0	0	0	1	0	0	0	5890	449	16	3	555	3	FHOD3	18	34156435	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08		34156435	43920813	74	10696											
FHOD3	80206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	34192014	34192014	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	34192014	A	T	34192014	4	4	163	1	0	0	0	0	0	1	0	0	5890	247	9	5	947	5	FHOD3	18	34192014	Nonsense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	35579	34192014	43885234	75	10697											
CHAF1A	10036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4409322	4409322	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	4409322	C	G	4409322	3	3	163	1	0	0	0	0	1	0	0	0	3313	681	24	4	536	4	CHAF1A	19	4409322	Missense_Mutation	SNP	C	TCGA-B0-5106-01A-01D-1421-08		4409322	54719661	76	10698											
TYK2	7297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10468695	10468695	+	Silent	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	10468695	G	A	10468695	2	1	163	1	0	0	0	0	0	0	0	1	16822	1074	38	1		1	TYK2	19	10468695	Silent	SNP	G	TCGA-B0-5106-01A-01D-1421-08	6059373	10468695	48660288	77	10699											
CACNA1A	773	broad.mit.edu;hgsc.bcm.edu	37	19	13325351	13325351	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	13325351	G	A	13325351	4	1	163	1	0	0	0	0	0	1	0	0	2540	1357	47	2	1753	2	CACNA1A	19	13325351	Nonsense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	2856656	13325351	45803632	78	10700											
ZNF91	7644	hgsc.bcm.edu;ucsc.edu	37	19	23543184	23543187	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	-	23543187	GATT	-	23543184	7	5	163	1	0	1	0	1	0	0	0	0	18212	942	33	0	982	0	ZNF91	19	23543184	Frame_Shift_Del	DEL	GATT	TCGA-B0-5106-01A-01D-1421-08	10217833	23543184	35585799	79	10701											
NFKBID	84807	hgsc.bcm.edu	37	19	36387710	36387711	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	G	36387711	-	G	36387710	7	5	163	1	0	1	1	0	0	0	0	0	10386	652	23	0	793	0	NFKBID	19	36387710	Frame_Shift_Ins	INS	-	TCGA-B0-5106-01A-01D-1421-08	12844526	36387710	22741273	80	10702											
CCDC61	729440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46519960	46519960	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	46519960	A	C	46519960	3	2	163	1	0	0	0	0	1	0	0	0	2834	188	7	5	1199	5	CCDC61	19	46519960	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	10132250	46519960	12609023	81	10703											
HRC	3270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49657389	49657389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	49657389	A	T	49657389	3	4	163	1	0	0	0	0	1	0	0	0	7359	275	10	5	1017	5	HRC	19	49657389	Missense_Mutation	SNP	A	TCGA-B0-5106-01A-01D-1421-08	3137429	49657389	9471594	82	10704											
C20orf26	26074	broad.mit.edu;ucsc.edu	37	20	20123553	20123553	+	Silent	SNP	G	A	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	20123553	A	A	20123553	2	1	163	1	0	0	0	0	0	0	0	1	2108	1310	46	2		2	C20orf26	20	20123553	Silent	SNP	G	TCGA-B0-5106-01A-01D-1421-08		20123553	42901967	83	10705											
WFDC5	149708	broad.mit.edu;hgsc.bcm.edu	37	20	43739049	43739049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	43739049	G	T	43739049	3	4	163	1	0	0	0	0	1	0	0	0	17366	1000	35	4	20	4	WFDC5	20	43739049	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	23615496	43739049	19286471	84	10706											
SNAI1	6615	broad.mit.edu	37	20	48600840	48600840	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	T	48600840	T	T	48600840	3	4	163	1	0	0	0	0	1	0	0	0	14839	1203	42	4	568	4	SNAI1	20	48600840	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08	4861791	48600840	14424680	85	10707											
C20orf166	128826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	61167749	61167749	+	Silent	SNP	G	G	A	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	A	61167749	G	A	61167749	2	1	163	1	0	0	0	0	0	0	0	1	2097	962	34	2		2	C20orf166	20	61167749	Silent	SNP	G	TCGA-B0-5106-01A-01D-1421-08	12566909	61167749	1857771	86	10708											
TRIOBP	11078	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	38130449	38130449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	38130449	G	C	38130449	3	2	163	1	0	0	0	0	1	0	0	0	16565	971	34	4	4132	4	TRIOBP	22	38130449	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08		38130449	13174117	87	10709											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53239905	53239905	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	53239905	G	C	53239905	3	2	163	1	0	0	0	0	1	0	0	0	8142	963	34	4	3308	4	KDM5C	23	53239905	Missense_Mutation	SNP	G	TCGA-B0-5106-01A-01D-1421-08		53239905	102030655	88	10710											
KIAA1210	57481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	118222879	118222879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	C	118222879	T	C	118222879	3	2	163	1	0	0	0	0	1	0	0	0	8221	1608	56	3	2831	3	KIAA1210	23	118222879	Missense_Mutation	SNP	T	TCGA-B0-5106-01A-01D-1421-08	64982974	118222879	37047681	89	10711											
MBNL3	55796	hgsc.bcm.edu	37	X	131525019	131525019	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5106-01A-01D-1421-08	TCGA-B0-5106-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0e28603-7204-416d-ba3d-5377a38f677d	6d436195-d34a-4f6a-83ca-217c4489b212	-	131525019	A	-	131525019	7	5	163	1	0	1	0	1	0	0	0	0	9362	156	6	0	518	0	MBNL3	23	131525019	Frame_Shift_Del	DEL	A	TCGA-B0-5106-01A-01D-1421-08	13302140	131525019	23745541	90	10712											
RSPO1	284654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	38079542	38079542	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	38079542	C	T	38079542	4	4	164	1	0	0	0	0	0	1	0	0	13722	508	18	2	340	2	RSPO1	1	38079542	Nonsense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08		38079542	211171079	1	10713											
TXNDC12	51060	broad.mit.edu;ucsc.edu	37	1	52492991	52492991	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	52492991	A	A	52492991	4	1	164	1	0	0	0	0	0	1	0	0	16805	864	30	4	293	4	TXNDC12	1	52492991	Nonsense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08	14413449	52492991	196757630	2	10714											
SPAG17	200162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	118598450	118598450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	118598450	T	A	118598450	3	1	164	1	0	0	0	0	1	0	0	0	14992	1838	64	5	4163	5	SPAG17	1	118598450	Missense_Mutation	SNP	T	TCGA-B0-5107-01A-01D-1421-08	66105459	118598450	130652171	3	10715											
ECM1	1893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150482475	150482475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	150482475	G	A	150482475	3	1	164	1	0	0	0	0	1	0	0	0	4899	1175	41	2	315	2	ECM1	1	150482475	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	31884025	150482475	98768146	4	10716											
FCRLA	84824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161677075	161677075	+	Silent	SNP	C	C	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	161677075	C	A	161677075	2	1	164	1	0	0	0	0	0	0	0	1	5807	813	29	4		4	FCRLA	1	161677075	Silent	SNP	C	TCGA-B0-5107-01A-01D-1421-08	11194600	161677075	87573546	5	10717											
NVL	4931	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	224491542	224491542	+	Silent	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	224491542	G	A	224491542	2	1	164	1	0	0	0	0	0	0	0	1	10787	1277	45	2		2	NVL	1	224491542	Silent	SNP	G	TCGA-B0-5107-01A-01D-1421-08	62814467	224491542	24759079	6	10718											
OR2T1	26696	hgsc.bcm.edu;ucsc.edu	37	1	248569296	248569297	+	Frame_Shift_Ins	INS	-	-	TGTG	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	TGTG	248569297	-	TGTG	248569296	7	5	164	1	0	1	1	0	0	0	0	0	11023	115	4	0	3	0	OR2T1	1	248569296	Frame_Shift_Ins	INS	-	TCGA-B0-5107-01A-01D-1421-08	24077754	248569296	681325	7	10719											
CYP26B1	56603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	72359545	72359545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	72359545	G	T	72359545	3	4	164	1	0	0	0	0	1	0	0	0	4158	1165	41	4	192	4	CYP26B1	2	72359545	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08		72359545	170839828	8	10720											
RANBP2	5903	broad.mit.edu;hgsc.bcm.edu	37	2	109384143	109384143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	109384143	A	G	109384143	3	3	164	1	0	0	0	0	1	0	0	0	13041	101	4	3	7226	3	RANBP2	2	109384143	Missense_Mutation	SNP	A	TCGA-B0-5107-01A-01D-1421-08	37024598	109384143	133815230	9	10721											
NEB	4703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152352797	152352797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	A	G	A	A	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	152352797	A	G	152352797	3	3	164	1	0	0	0	0	1	0	0	0	10309	101	4	3	1138	3	NEB	2	152352797	Missense_Mutation	SNP	A	TCGA-B0-5107-01A-01D-1421-08	42968654	152352797	90846576	10	10722											
CHL1	10752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	443351	443351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	443351	C	T	443351	3	4	164	1	0	0	0	0	1	0	0	0	3351	838	29	2	3526	2	CHL1	3	443351	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08		443351	197579079	11	10723											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10183794	10183794	+	Missense_Mutation	SNP	G	G	T	rs119103277	alternate_allele	TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	10183794	G	T	10183794	3	4	164	1	0	0	0	0	1	0	0	0	17174	1357	47	4	265	4	VHL	3	10183794	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	9740443	10183794	187838636	12	10724											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu	37	3	52442512	52442512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	C	52442512	T	C	52442512	3	2	164	1	0	0	0	0	1	0	0	0	1311	1493	52	3	2012	3	BAP1	3	52442512	Missense_Mutation	SNP	T	TCGA-B0-5107-01A-01D-1421-08	42258718	52442512	145579918	13	10725											
PBRM1	55193	hgsc.bcm.edu	37	3	52676063	52676063	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	52676063	T	A	52676063	5	1	164	1	0	0	0	0	0	0	1	0	11498	1536	53	5	3990	5	PBRM1	3	52676063	Splice_Site	SNP	T	TCGA-B0-5107-01A-01D-1421-08	233551	52676063	145346367	14	10726											
ATR	545	hgsc.bcm.edu;ucsc.edu	37	3	142266605	142266605	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	-	142266605	A	-	142266605	7	5	164	1	0	1	0	1	0	0	0	0	1204	449	16	0	4743	0	ATR	3	142266605	Frame_Shift_Del	DEL	A	TCGA-B0-5107-01A-01D-1421-08	89590542	142266605	55755825	15	10727											
FGFBP1	9982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	15938034	15938034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	15938034	C	A	15938034	3	1	164	1	0	0	0	0	1	0	0	0	5867	796	28	4	486	4	FGFBP1	4	15938034	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08		15938034	175216242	16	10728											
JMY	133746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	78608277	78608277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	78608277	C	A	78608277	3	1	164	1	0	0	0	0	1	0	0	0	7964	595	21	4	2050	4	JMY	5	78608277	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08		78608277	102306983	17	10729											
GPX6	257202	hgsc.bcm.edu;ucsc.edu	37	6	28483478	28483478	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	-	28483478	G	-	28483478	7	5	164	1	0	1	0	1	0	0	0	0	6751	991	35	0	642	0	GPX6	6	28483478	Frame_Shift_Del	DEL	G	TCGA-B0-5107-01A-01D-1421-08		28483478	142631589	18	10730											
C6orf35	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	157744466	157744466	+	Silent	SNP	A	A	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	157744466	A	G	157744466	2	3	164	1	0	0	0	0	0	0	0	1	2365	214	8	3		3	C6orf35	6	157744466	Silent	SNP	A	TCGA-B0-5107-01A-01D-1421-08	129260988	157744466	13370601	19	10731											
SUN1	23353	broad.mit.edu;ucsc.edu	37	7	912892	912892	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	912892	A	A	912892	3	1	164	1	0	0	0	0	1	0	0	0	15403	1116	39	1	2539	1	SUN1	7	912892	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08		912892	158225771	20	10732											
ADAP1	11033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	939073	939073	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	C	939073	A	C	939073	3	2	164	1	0	0	0	0	1	0	0	0	279	391	14	5	286	5	ADAP1	7	939073	Missense_Mutation	SNP	A	TCGA-B0-5107-01A-01D-1421-08	26181	939073	158199590	21	10733											
ANLN	54443	broad.mit.edu	37	7	36478858	36478858	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	C	36478858	C	C	36478858	3	2	164	1	0	0	0	0	1	0	0	0	694	15	1	5	3011	5	ANLN	7	36478858	Missense_Mutation	SNP	A	TCGA-B0-5107-01A-01D-1421-08	35539785	36478858	122659805	22	10734											
CUX1	1523	hgsc.bcm.edu;ucsc.edu	37	7	101845357	101845358	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	C	101845358	-	C	101845357	7	5	164	1	0	1	1	0	0	0	0	0	4066	1667	58	0	2917	0	CUX1	7	101845357	Frame_Shift_Ins	INS	-	TCGA-B0-5107-01A-01D-1421-08	65366499	101845357	57293306	23	10735											
NRF1	4899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129297261	129297261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	129297261	G	A	129297261	3	1	164	1	0	0	0	0	1	0	0	0	10653	1029	36	2	72	2	NRF1	7	129297261	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	27451904	129297261	29841402	24	10736											
PRKDC	5591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	48694798	48694798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	48694798	C	T	48694798	3	4	164	1	0	0	0	0	1	0	0	0	12531	595	21	2	1000	2	PRKDC	8	48694798	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08		48694798	97669224	25	10737											
ZFPM2	23414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	106813890	106813890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	106813890	G	A	106813890	3	1	164	1	0	0	0	0	1	0	0	0	17670	1058	37	1	1610	1	ZFPM2	8	106813890	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	58119092	106813890	39550132	26	10738											
SMARCA2	6595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	2116050	2116050	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	2116050	G	A	2116050	5	1	164	1	0	0	0	0	0	0	1	0	14782	1275	44	2	3779	2	SMARCA2	9	2116050	Splice_Site	SNP	G	TCGA-B0-5107-01A-01D-1421-08		2116050	139097381	27	10739											
TLR4	7099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	120475390	120475390	+	Silent	SNP	T	T	C	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	C	120475390	T	C	120475390	2	2	164	1	0	0	0	0	0	0	0	1	15965	1413	49	3		3	TLR4	9	120475390	Silent	SNP	T	TCGA-B0-5107-01A-01D-1421-08	118359340	120475390	20738041	28	10740											
RABGAP1	23637	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125865394	125865394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	125865394	G	A	125865394	3	1	164	1	0	0	0	0	1	0	0	0	12977	1319	46	2	3210	2	RABGAP1	9	125865394	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	5390004	125865394	15348037	29	10741											
WDR37	22884	broad.mit.edu;hgsc.bcm.edu	37	10	1149775	1149775	+	Silent	SNP	A	A	C	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	C	1149775	A	C	1149775	2	2	164	1	0	0	0	0	0	0	0	1	17303	202	7	5		5	WDR37	10	1149775	Silent	SNP	A	TCGA-B0-5107-01A-01D-1421-08		1149775	134384972	30	10742											
CUZD1	50624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	124593448	124593448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	124593448	C	T	124593448	3	4	164	1	0	0	0	0	1	0	0	0	4068	884	31	1	440	1	CUZD1	10	124593448	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08	123443673	124593448	10941299	31	10743											
MUC5B	727897	broad.mit.edu	37	11	1268529	1268529	+	Silent	SNP	G	A	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	1268529	A	A	1268529	2	1	164	1	0	0	0	0	0	0	0	1	9986	1103	39	1		1	MUC5B	11	1268529	Silent	SNP	G	TCGA-B0-5107-01A-01D-1421-08		1268529	133737987	32	10744											
RBM14	10432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66391778	66391778	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	66391778	T	G	66391778	3	3	164	1	0	0	0	0	1	0	0	0	13128	1696	59	5	437	5	RBM14	11	66391778	Missense_Mutation	SNP	T	TCGA-B0-5107-01A-01D-1421-08	65123249	66391778	68614738	33	10745											
SHANK2	22941	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	70332433	70332433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	C	70332433	G	C	70332433	3	2	164	1	0	0	0	0	1	0	0	0	14278	1029	36	4	1592	4	SHANK2	11	70332433	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	3940655	70332433	64674083	34	10746											
NLRX1	79671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119050726	119050726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	119050726	G	A	119050726	3	1	164	1	0	0	0	0	1	0	0	0	10492	1232	43	2	2018	2	NLRX1	11	119050726	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	48718293	119050726	15955790	35	10747											
CCNT1	904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49110458	49110458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	49110458	T	G	49110458	3	3	164	1	0	0	0	0	1	0	0	0	2936	1406	49	5	2215	5	CCNT1	12	49110458	Missense_Mutation	SNP	T	TCGA-B0-5107-01A-01D-1421-08		49110458	84741437	36	10748											
WIF1	11197	hgsc.bcm.edu;ucsc.edu	37	12	65461562	65461562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	65461562	G	T	65461562	3	4	164	1	0	0	0	0	1	0	0	0	17378	1232	43	4	616	4	WIF1	12	65461562	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	16351104	65461562	68390333	37	10749											
POC1B	282809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	89885726	89885726	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	-	89885726	C	-	89885726	7	5	164	1	0	1	0	1	0	0	0	0	12183	507	18	0	1033	0	POC1B	12	89885726	Frame_Shift_Del	DEL	C	TCGA-B0-5107-01A-01D-1421-08	24424164	89885726	43966169	38	10750											
NTN4	59277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	96181160	96181161	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	-	96181161	AG	-	96181160	7	5	164	1	0	1	0	1	0	0	0	0	10709	188	7	0	1780	0	NTN4	12	96181160	Frame_Shift_Del	DEL	AG	TCGA-B0-5107-01A-01D-1421-08	6295434	96181160	37670735	39	10751											
MAB21L1	4081	broad.mit.edu;ucsc.edu	37	13	36049373	36049373	+	Silent	SNP	G	A	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	36049373	A	A	36049373	2	1	164	1	0	0	0	0	0	0	0	1	9148	1136	40	1		1	MAB21L1	13	36049373	Silent	SNP	G	TCGA-B0-5107-01A-01D-1421-08		36049373	79120505	40	10752											
CIDEB	27141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24774973	24774973	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	C	24774973	T	C	24774973	5	2	164	1	0	0	0	0	0	0	1	0	3428	1594	55	3	137	3	CIDEB	14	24774973	Splice_Site	SNP	T	TCGA-B0-5107-01A-01D-1421-08		24774973	82574567	41	10753											
ARHGAP5	394	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	32560575	32560575	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	-	32560575	A	-	32560575	7	5	164	1	0	1	0	1	0	0	0	0	886	130	5	0	702	0	ARHGAP5	14	32560575	Frame_Shift_Del	DEL	A	TCGA-B0-5107-01A-01D-1421-08	7785602	32560575	74788965	42	10754											
FLVCR2	55640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	76088434	76088434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	76088434	A	G	76088434	3	3	164	1	0	0	0	0	1	0	0	0	5953	333	12	3	688	3	FLVCR2	14	76088434	Missense_Mutation	SNP	A	TCGA-B0-5107-01A-01D-1421-08	43527859	76088434	31261106	43	10755											
CAPN3	825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42702005	42702005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	42702005	T	G	42702005	3	3	164	1	0	0	0	0	1	0	0	0	2630	1461	51	5	2135	5	CAPN3	15	42702005	Missense_Mutation	SNP	T	TCGA-B0-5107-01A-01D-1421-08		42702005	59829387	44	10756											
CPEB1	64506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	83226709	83226709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	83226709	C	A	83226709	3	1	164	1	0	0	0	0	1	0	0	0	3802	855	30	4	1329	4	CPEB1	15	83226709	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08	40524704	83226709	19304683	45	10757											
ALPK3	57538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	85406027	85406027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	85406027	G	A	85406027	3	1	164	1	0	0	0	0	1	0	0	0	546	1116	39	1	4935	1	ALPK3	15	85406027	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	2179318	85406027	17125365	46	10758											
CRK	1398	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1326915	1326915	+	Silent	SNP	A	A	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	1326915	A	G	1326915	2	3	164	1	0	0	0	0	0	0	0	1	3886	358	13	3		3	CRK	17	1326915	Silent	SNP	A	TCGA-B0-5107-01A-01D-1421-08		1326915	79868295	47	10759											
OR1A1	8383	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3119395	3119395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	3119395	C	A	3119395	3	1	164	1	0	0	0	0	1	0	0	0	10956	912	32	4	483	4	OR1A1	17	3119395	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08	1792480	3119395	78075815	48	10760											
C17orf103	256302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	21147503	21147503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	21147503	G	A	21147503	3	1	164	1	0	0	0	0	1	0	0	0	1852	1140	40	1	87	1	C17orf103	17	21147503	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	18028108	21147503	60047707	49	10761											
EVPL	2125	broad.mit.edu;hgsc.bcm.edu	37	17	74011147	74011147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	74011147	C	T	74011147	3	4	164	1	0	0	0	0	1	0	0	0	5294	652	23	1	4053	1	EVPL	17	74011147	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08	52863644	74011147	7184063	50	10762											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	7026067	7026067	+	Silent	SNP	C	C	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	7026067	C	T	7026067	2	4	164	1	0	0	0	0	0	0	0	1	8612	564	20	2		2	LAMA1	18	7026067	Silent	SNP	C	TCGA-B0-5107-01A-01D-1421-08		7026067	71051181	51	10763											
C3	718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6686809	6686809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	6686809	C	G	6686809	3	3	164	1	0	0	0	0	1	0	0	0	2206	912	32	4	1453	4	C3	19	6686809	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08		6686809	52442174	52	10764											
FBN3	84467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8165827	8165827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	8165827	C	T	8165827	3	4	164	1	0	0	0	0	1	0	0	0	5711	739	26	2	3406	2	FBN3	19	8165827	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08	1479018	8165827	50963156	53	10765											
RHPN2	85415	broad.mit.edu;hgsc.bcm.edu	37	19	33493761	33493761	+	Silent	SNP	A	A	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	33493761	A	G	33493761	2	3	164	1	0	0	0	0	0	0	0	1	13364	214	8	3		3	RHPN2	19	33493761	Silent	SNP	A	TCGA-B0-5107-01A-01D-1421-08	25327934	33493761	25635222	54	10766											
USP29	57663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57640818	57640818	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	57640818	G	T	57640818	4	4	164	1	0	0	0	0	0	1	0	0	17071	1175	41	4	777	4	USP29	19	57640818	Nonsense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	24147057	57640818	1488165	55	10767											
NPBWR2	2832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62737383	62737383	+	Missense_Mutation	SNP	C	C	T	rs140478149		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	62737383	C	T	62737383	3	4	164	1	0	0	0	0	1	0	0	0	10576	536	19	1	202	1	NPBWR2	20	62737383	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08		62737383	288137	56	10768											
TLR8	51311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	12939545	12939545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	12939545	C	A	12939545	3	1	164	1	0	0	0	0	1	0	0	0	15969	855	30	4	2392	4	TLR8	23	12939545	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08		12939545	142331015	57	10769											
NHS	4810	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	17745608	17745608	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	G	17745608	C	G	17745608	3	3	164	1	0	0	0	0	1	0	0	0	10418	855	30	4	3446	4	NHS	23	17745608	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08	4806063	17745608	137524952	58	10770											
PPEF1	5475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	18836212	18836212	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	T	18836212	C	T	18836212	4	4	164	1	0	0	0	0	0	1	0	0	12314	528	19	1	1500	1	PPEF1	23	18836212	Nonsense_Mutation	SNP	C	TCGA-B0-5107-01A-01D-1421-08	1090604	18836212	136434348	59	10771											
PHKA2	5256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	18970644	18970644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	18970644	T	A	18970644	3	1	164	1	0	0	0	0	1	0	0	0	11851	1435	50	5	3578	5	PHKA2	23	18970644	Missense_Mutation	SNP	T	TCGA-B0-5107-01A-01D-1421-08	134432	18970644	136299916	60	10772											
CPXCR1	53336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	88009260	88009260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5107-01A-01D-1421-08	TCGA-B0-5107-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2086a2e1-0451-45ba-9ca3-d4e5f61e590b	3120fe95-115c-4fea-acc0-40c37f8c24e8	A	88009260	G	A	88009260	3	1	164	1	0	0	0	0	1	0	0	0	3838	1174	41	2	847	2	CPXCR1	23	88009260	Missense_Mutation	SNP	G	TCGA-B0-5107-01A-01D-1421-08	69038616	88009260	67261300	61	10773											
VHL	7428	hgsc.bcm.edu	37	3	10183665	10183665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5107-01A-01W-1475-10	TCGA-B0-5107-11A-01W-1475-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	12ca17d1-d74d-4927-81c0-16be4ee6febc	6b3be423-aa19-4913-9a56-8e814e0edec2	T	10183665	C	T	10183665	3	4	165	1	0	0	0	0	1	0	0	0	17174	652	23	1	136	1	VHL	3	10183665	Missense_Mutation	SNP	C	TCGA-B0-5107-01A-01W-1475-10		10183665	187838765	1	10774											
EIF2B3	8891	hgsc.bcm.edu;ucsc.edu	37	1	45347334	45347334	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	-	45347334	C	-	45347334	7	5	166	1	0	1	0	1	0	0	0	0	5004	855	30	0	685	0	EIF2B3	1	45347334	Frame_Shift_Del	DEL	C	TCGA-B0-5108-01A-01D-1421-08		45347334	203903287	1	10775											
AMY2A	279	broad.mit.edu	37	1	104160101	104160101	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	104160101	A	A	104160101	4	1	166	1	0	0	0	0	0	1	0	0	594	805	28	4	41	4	AMY2A	1	104160101	Nonsense_Mutation	SNP	C	TCGA-B0-5108-01A-01D-1421-08	58812767	104160101	145090520	2	10776											
IGSF3	3321	hgsc.bcm.edu	37	1	117127342	117127343	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	117127343	-	C	117127342	7	5	166	1	0	1	1	0	0	0	0	0	7608	1203	42	0	823	0	IGSF3	1	117127342	Frame_Shift_Ins	INS	-	TCGA-B0-5108-01A-01D-1421-08	12967241	117127342	132123279	3	10777											
S100A12	6283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153346341	153346341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	153346341	C	T	153346341	3	4	166	1	0	0	0	0	1	0	0	0	13787	710	25	2	41	2	S100A12	1	153346341	Missense_Mutation	SNP	C	TCGA-B0-5108-01A-01D-1421-08	36218999	153346341	95904280	4	10778											
NTRK1	4914	hgsc.bcm.edu;ucsc.edu	37	1	156845351	156845351	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	-	156845351	C	-	156845351	7	5	166	1	0	1	0	1	0	0	0	0	10713	855	30	0	1570	0	NTRK1	1	156845351	Frame_Shift_Del	DEL	C	TCGA-B0-5108-01A-01D-1421-08	3499010	156845351	92405270	5	10779											
PTPN7	5778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	202117740	202117740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	202117740	G	C	202117740	3	2	166	1	0	0	0	0	1	0	0	0	12806	1194	42	4	9	4	PTPN7	1	202117740	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08	45272389	202117740	47132881	6	10780											
USH2A	7399	broad.mit.edu;ucsc.edu	37	1	215987118	215987118	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	215987118	C	C	215987118	3	2	166	1	0	0	0	0	1	0	0	0	17048	330	12	5	6005	5	USH2A	1	215987118	Missense_Mutation	SNP	A	TCGA-B0-5108-01A-01D-1421-08	13869378	215987118	33263503	7	10781											
CCDC104	112942	broad.mit.edu;hgsc.bcm.edu	37	2	55772134	55772134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	55772134	T	C	55772134	3	2	166	1	0	0	0	0	1	0	0	0	2741	1493	52	3	1057	3	CCDC104	2	55772134	Missense_Mutation	SNP	T	TCGA-B0-5108-01A-01D-1421-08		55772134	187427239	8	10782											
ANKRD36B	57730	broad.mit.edu	37	2	98201807	98201807	+	Silent	SNP	C	T	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	98201807	T	T	98201807	2	4	166	1	0	0	0	0	0	0	0	1	666	581	21	2		2	ANKRD36B	2	98201807	Silent	SNP	C	TCGA-B0-5108-01A-01D-1421-08	42429673	98201807	144997566	9	10783											
CWC22	57703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	180818964	180818964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	180818964	G	A	180818964	3	1	166	1	0	0	0	0	1	0	0	0	4070	1290	45	2	1089	2	CWC22	2	180818964	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08	82617157	180818964	62380409	10	10784											
PLCD4	84812	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219487602	219487602	+	Splice_Site	SNP	G	G	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	219487602	G	C	219487602	5	2	166	1	0	0	0	0	0	0	1	0	12040	1275	44	4	791	4	PLCD4	2	219487602	Splice_Site	SNP	G	TCGA-B0-5108-01A-01D-1421-08	38668638	219487602	23711771	11	10785											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188248	10188248	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	10188248	A	T	10188248	3	4	166	1	0	0	0	0	1	0	0	0	17174	362	13	5	397	5	VHL	3	10188248	Missense_Mutation	SNP	A	TCGA-B0-5108-01A-01D-1421-08		10188248	187834182	12	10786											
FLNB	2317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	58128451	58128451	+	Silent	SNP	G	G	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	58128451	G	A	58128451	2	1	166	1	0	0	0	0	0	0	0	1	5941	1132	40	1		1	FLNB	3	58128451	Silent	SNP	G	TCGA-B0-5108-01A-01D-1421-08	47940203	58128451	139893979	13	10787											
MFI2	4241	broad.mit.edu;hgsc.bcm.edu	37	3	196753618	196753618	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	G	196753618	C	G	196753618	3	3	166	1	0	0	0	0	1	0	0	0	9529	826	29	4	2256	4	MFI2	3	196753618	Missense_Mutation	SNP	C	TCGA-B0-5108-01A-01D-1421-08	138625167	196753618	1268812	14	10788											
GRID2	2895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	94547477	94547477	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	94547477	A	T	94547477	3	4	166	1	0	0	0	0	1	0	0	0	6779	449	16	5	2305	5	GRID2	4	94547477	Missense_Mutation	SNP	A	TCGA-B0-5108-01A-01D-1421-08		94547477	96606799	15	10789											
CENPE	1062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	104054940	104054940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	104054940	T	C	104054940	3	2	166	1	0	0	0	0	1	0	0	0	3232	1841	64	3	1509	3	CENPE	4	104054940	Missense_Mutation	SNP	T	TCGA-B0-5108-01A-01D-1421-08	9507463	104054940	87099336	16	10790											
CEP120	153241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	122685709	122685709	+	Silent	SNP	A	A	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	122685709	A	T	122685709	2	4	166	1	0	0	0	0	0	0	0	1	3248	117	5	5		5	CEP120	5	122685709	Silent	SNP	A	TCGA-B0-5108-01A-01D-1421-08		122685709	58229551	17	10791											
HNRNPH1	3187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179047903	179047903	+	Silent	SNP	C	C	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	179047903	C	T	179047903	2	4	166	1	0	0	0	0	0	0	0	1	7273	564	20	2		2	HNRNPH1	5	179047903	Silent	SNP	C	TCGA-B0-5108-01A-01D-1421-08	56362194	179047903	1867357	18	10792											
FAM83B	222584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	54791201	54791201	+	Silent	SNP	T	T	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	54791201	T	C	54791201	2	2	166	1	0	0	0	0	0	0	0	1	5641	1461	51	3		3	FAM83B	6	54791201	Silent	SNP	T	TCGA-B0-5108-01A-01D-1421-08		54791201	116323866	19	10793											
DST	667	broad.mit.edu	37	6	56394513	56394513	+	Silent	SNP	G	T	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	56394513	T	T	56394513	2	4	166	1	0	0	0	0	0	0	0	1	4785	1190	42	4		4	DST	6	56394513	Silent	SNP	G	TCGA-B0-5108-01A-01D-1421-08	1603312	56394513	114720554	20	10794											
LAMA4	3910	hgsc.bcm.edu;ucsc.edu	37	6	112522880	112522880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	-	112522880	T	-	112522880	7	5	166	1	0	1	0	1	0	0	0	0	8615	1490	52	0	5179	0	LAMA4	6	112522880	Frame_Shift_Del	DEL	T	TCGA-B0-5108-01A-01D-1421-08	56128367	112522880	58592187	21	10795											
RBM16	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	155153658	155153658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	155153658	C	T	155153658	3	4	166	1	0	0	0	0	1	0	0	0	13131	681	24	2	3023	2	RBM16	6	155153658	Missense_Mutation	SNP	C	TCGA-B0-5108-01A-01D-1421-08	42630778	155153658	15961409	22	10796											
ELN	2006	broad.mit.edu	37	7	73462860	73462860	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	73462860	T	T	73462860	3	4	166	1	0	0	0	0	1	0	0	0	5073	768	27	1	846	1	ELN	7	73462860	Missense_Mutation	SNP	C	TCGA-B0-5108-01A-01D-1421-08		73462860	85675803	23	10797											
FBXO43	286151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	101153613	101153613	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	101153613	G	C	101153613	3	2	166	1	0	0	0	0	1	0	0	0	5759	1377	48	4	1273	4	FBXO43	8	101153613	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08		101153613	45210409	24	10798											
UHRF2	115426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	6420934	6420934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	6420934	T	C	6420934	3	2	166	1	0	0	0	0	1	0	0	0	16982	1841	64	3	182	3	UHRF2	9	6420934	Missense_Mutation	SNP	T	TCGA-B0-5108-01A-01D-1421-08		6420934	134792497	25	10799											
PCDH15	65217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	56077194	56077194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	56077194	G	T	56077194	3	4	166	1	0	0	0	0	1	0	0	0	11518	1203	42	4	6902	4	PCDH15	10	56077194	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08		56077194	79457553	26	10800											
CD44	960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	35208449	35208449	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	35208449	T	A	35208449	5	1	166	1	0	0	0	0	0	0	1	0	3019	1652	57	5	452	5	CD44	11	35208449	Splice_Site	SNP	T	TCGA-B0-5108-01A-01D-1421-08		35208449	99798067	27	10801											
SLC22A6	9356	broad.mit.edu;hgsc.bcm.edu	37	11	62744780	62744780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	62744780	G	A	62744780	3	1	166	1	0	0	0	0	1	0	0	0	14471	971	34	2	258	2	SLC22A6	11	62744780	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08	27536331	62744780	72261736	28	10802											
SIK2	23235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111591281	111591281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	G	111591281	C	G	111591281	3	3	166	1	0	0	0	0	1	0	0	0	14331	506	18	4	1617	4	SIK2	11	111591281	Missense_Mutation	SNP	C	TCGA-B0-5108-01A-01D-1421-08	48846501	111591281	23415235	29	10803											
IGSF9B	22997	hgsc.bcm.edu	37	11	133802056	133802056	+	Silent	SNP	G	G	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	133802056	G	T	133802056	2	4	166	1	0	0	0	0	0	0	0	1	7613	1164	41	4		4	IGSF9B	11	133802056	Silent	SNP	G	TCGA-B0-5108-01A-01D-1421-08	22210775	133802056	1204460	30	10804											
PLBD1	79887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14656715	14656715	+	Silent	SNP	A	A	G	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	G	14656715	A	G	14656715	2	3	166	1	0	0	0	0	0	0	0	1	12032	446	16	3		3	PLBD1	12	14656715	Silent	SNP	A	TCGA-B0-5108-01A-01D-1421-08		14656715	119195180	31	10805											
GUCY2C	2984	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14832651	14832651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	14832651	T	A	14832651	3	1	166	1	0	0	0	0	1	0	0	0	6903	1609	56	5	2539	5	GUCY2C	12	14832651	Missense_Mutation	SNP	T	TCGA-B0-5108-01A-01D-1421-08	175936	14832651	119019244	32	10806											
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49420872	49420872	+	Silent	SNP	G	G	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	49420872	G	C	49420872	2	2	166	1	0	0	0	0	0	0	0	1	9628	1219	43	4		4	MLL2	12	49420872	Silent	SNP	G	TCGA-B0-5108-01A-01D-1421-08	34588221	49420872	84431023	33	10807											
SRGAP1	57522	hgsc.bcm.edu;ucsc.edu	37	12	64472751	64472752	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	64472752	-	C	64472751	7	5	166	1	0	1	1	0	0	0	0	0	15157	1435	50	0	1212	0	SRGAP1	12	64472751	Frame_Shift_Ins	INS	-	TCGA-B0-5108-01A-01D-1421-08	15051879	64472751	69379144	34	10808											
C12orf51	0	hgsc.bcm.edu;ucsc.edu	37	12	112650435	112650435	+	Silent	SNP	G	G	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	112650435	G	C	112650435	2	2	166	1	0	0	0	0	0	0	0	1	1698	958	34	4		4	C12orf51	12	112650435	Silent	SNP	G	TCGA-B0-5108-01A-01D-1421-08	48177684	112650435	21201460	35	10809											
FREM2	341640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	39420850	39420850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	39420850	T	C	39420850	3	2	166	1	0	0	0	0	1	0	0	0	6052	1551	54	3	6186	3	FREM2	13	39420850	Missense_Mutation	SNP	T	TCGA-B0-5108-01A-01D-1421-08		39420850	75749028	36	10810											
TGM1	7051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24731316	24731316	+	Silent	SNP	G	G	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	24731316	G	A	24731316	2	1	166	1	0	0	0	0	0	0	0	1	15841	958	34	2		2	TGM1	14	24731316	Silent	SNP	G	TCGA-B0-5108-01A-01D-1421-08		24731316	82618224	37	10811											
SOS2	6655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	50626575	50626575	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	G	50626575	T	G	50626575	3	3	166	1	0	0	0	0	1	0	0	0	14950	1667	58	5	2628	5	SOS2	14	50626575	Missense_Mutation	SNP	T	TCGA-B0-5108-01A-01D-1421-08	25895259	50626575	56722965	38	10812											
DYNC1LI2	1783	hgsc.bcm.edu	37	16	66761652	66761653	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	G	66761653	-	G	66761652	7	5	166	1	0	1	1	0	0	0	0	0	4847	1567	55	0	290	0	DYNC1LI2	16	66761652	Frame_Shift_Ins	INS	-	TCGA-B0-5108-01A-01D-1421-08		66761652	23593101	39	10813											
KRT16	3868	broad.mit.edu	37	17	39768515	39768515	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	39768515	C	C	39768515	3	2	166	1	0	0	0	0	1	0	0	0	8460	1136	40	4	1027	4	KRT16	17	39768515	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08		39768515	41426695	40	10814											
ASXL3	80816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	31318800	31318800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	31318800	G	A	31318800	3	1	166	1	0	0	0	0	1	0	0	0	1068	1291	45	2	1474	2	ASXL3	18	31318800	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08		31318800	46758448	41	10815											
APC2	10297	broad.mit.edu	37	19	1456344	1456344	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	1456344	A	A	1456344	3	1	166	1	0	0	0	0	1	0	0	0	764	623	22	4	783	4	APC2	19	1456344	Missense_Mutation	SNP	C	TCGA-B0-5108-01A-01D-1421-08		1456344	57672639	42	10816											
C3	718	broad.mit.edu	37	19	6694615	6694615	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	6694615	C	C	6694615	3	2	166	1	0	0	0	0	1	0	0	0	2206	1203	42	4	2082	4	C3	19	6694615	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08	5238271	6694615	52434368	43	10817											
ZNF302	55900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	35175869	35175869	+	Silent	SNP	A	A	G	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	G	35175869	A	G	35175869	2	3	166	1	0	0	0	0	0	0	0	1	17844	69	3	3		3	ZNF302	19	35175869	Silent	SNP	A	TCGA-B0-5108-01A-01D-1421-08	28481254	35175869	23953114	44	10818											
MEGF8	1954	hgsc.bcm.edu	37	19	42830478	42830478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	42830478	G	C	42830478	3	2	166	1	0	0	0	0	1	0	0	0	9470	1232	43	4	85	4	MEGF8	19	42830478	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08	7654609	42830478	16298505	45	10819											
ZNF528	84436	hgsc.bcm.edu;ucsc.edu	37	19	52918827	52918827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	-	52918827	A	-	52918827	7	5	166	1	0	1	0	1	0	0	0	0	17981	391	14	0	736	0	ZNF528	19	52918827	Frame_Shift_Del	DEL	A	TCGA-B0-5108-01A-01D-1421-08	10088349	52918827	6210156	46	10820											
PEG3	5178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57326087	57326087	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	57326087	A	C	57326087	3	2	166	1	0	0	0	0	1	0	0	0	11727	214	8	5	1047	5	PEG3	19	57326087	Missense_Mutation	SNP	A	TCGA-B0-5108-01A-01D-1421-08	4407260	57326087	1802896	47	10821											
PLCB4	5332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	9374306	9374306	+	Silent	SNP	G	G	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	9374306	G	T	9374306	2	4	166	1	0	0	0	0	0	0	0	1	12037	1277	45	4		4	PLCB4	20	9374306	Silent	SNP	G	TCGA-B0-5108-01A-01D-1421-08		9374306	53651214	48	10822											
NINL	22981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	25442206	25442206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	25442206	C	A	25442206	3	1	166	1	0	0	0	0	1	0	0	0	10427	796	28	4	516	4	NINL	20	25442206	Missense_Mutation	SNP	C	TCGA-B0-5108-01A-01D-1421-08	16067900	25442206	37583314	49	10823											
ASXL1	171023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31025137	31025137	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	C	31025137	G	C	31025137	3	2	166	1	0	0	0	0	1	0	0	0	1066	942	33	4	4678	4	ASXL1	20	31025137	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08	5582931	31025137	32000383	50	10824											
MIOX	55586	broad.mit.edu	37	22	50926751	50926751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	A	50926751	A	A	50926751	3	1	166	1	0	0	0	0	1	0	0	0	9597	1203	42	2	406	2	MIOX	22	50926751	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08		50926751	377815	51	10825											
KDM5C	8242	broad.mit.edu;ucsc.edu	37	X	53230876	53230877	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	53230877	T	T	53230876	7	5	166	1	0	1	1	0	0	0	0	0	8142	1024	36	0	2915	0	KDM5C	23	53230876	Frame_Shift_Ins	INS	-	TCGA-B0-5108-01A-01D-1421-08		53230876	102039684	52	10826											
BHLHB9	80823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	102005104	102005104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5108-01A-01D-1421-08	TCGA-B0-5108-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1d37af8-d2c3-4825-8e47-1a2e52e3acbb	39bbe17d-0e43-43a7-920f-88547ae97ebf	T	102005104	G	T	102005104	3	4	166	1	0	0	0	0	1	0	0	0	1420	1232	43	4	1183	4	BHLHB9	23	102005104	Missense_Mutation	SNP	G	TCGA-B0-5108-01A-01D-1421-08	48774228	102005104	53265456	53	10827											
MEGF6	1953	hgsc.bcm.edu	37	1	3413839	3413840	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	G	3413840	-	G	3413839	7	5	167	1	0	1	1	0	0	0	0	0	9469	188	7	0	1230	0	MEGF6	1	3413839	Frame_Shift_Ins	INS	-	TCGA-B0-5109-01A-02D-1421-08		3413839	245836782	1	10828											
PI4KB	5298	broad.mit.edu;hgsc.bcm.edu	37	1	151288136	151288136	+	Silent	SNP	G	G	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	151288136	G	A	151288136	2	1	167	1	0	0	0	0	0	0	0	1	11881	958	34	2		2	PI4KB	1	151288136	Silent	SNP	G	TCGA-B0-5109-01A-02D-1421-08	147874297	151288136	97962485	2	10829											
ILDR2	387597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	166908755	166908755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	166908755	C	T	166908755	3	4	167	1	0	0	0	0	1	0	0	0	7717	710	25	2	1395	2	ILDR2	1	166908755	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08	15620619	166908755	82341866	3	10830											
ZNF670	93474	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247202840	247202840	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	247202840	C	T	247202840	5	4	167	1	0	0	0	0	0	0	1	0	18089	695	24	2	1178	2	ZNF670	1	247202840	Splice_Site	SNP	C	TCGA-B0-5109-01A-02D-1421-08	80294085	247202840	2047781	4	10831											
SPHKAP	80309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228881360	228881360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	G	228881360	C	G	228881360	3	3	167	1	0	0	0	0	1	0	0	0	15060	922	32	4	916	4	SPHKAP	2	228881360	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08		228881360	14318013	5	10832											
IL17RC	84818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9960258	9960258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	9960258	G	T	9960258	3	4	167	1	0	0	0	0	1	0	0	0	7648	1029	36	4	661	4	IL17RC	3	9960258	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08		9960258	188062172	6	10833											
NPHP3	27031	broad.mit.edu;hgsc.bcm.edu	37	3	132416207	132416207	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	132416207	C	A	132416207	5	1	167	1	0	0	0	0	0	0	1	0	10587	695	24	4	2063	4	NPHP3	3	132416207	Splice_Site	SNP	C	TCGA-B0-5109-01A-02D-1421-08	122455949	132416207	65606223	7	10834											
RPL22L1	200916	broad.mit.edu;ucsc.edu	37	3	170585834	170585834	+	Silent	SNP	G	T	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	170585834	T	T	170585834	2	4	167	1	0	0	0	0	0	0	0	1	13582	1280	45	4		4	RPL22L1	3	170585834	Silent	SNP	G	TCGA-B0-5109-01A-02D-1421-08	38169627	170585834	27436596	8	10835											
CLCN2	1181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184064449	184064449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	184064449	C	T	184064449	3	4	167	1	0	0	0	0	1	0	0	0	3465	536	19	1	58	1	CLCN2	3	184064449	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08	13478615	184064449	13957981	9	10836											
FGFR3	2261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	1804696	1804696	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	1804696	C	A	1804696	4	1	167	1	0	0	0	0	0	1	0	0	5874	893	31	4	1012	4	FGFR3	4	1804696	Nonsense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08		1804696	189349580	10	10837											
GBA3	57733	broad.mit.edu;hgsc.bcm.edu	37	4	22820365	22820365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	G	22820365	A	G	22820365	3	3	167	1	0	0	0	0	1	0	0	0	6275	101	4	3	1247	3	GBA3	4	22820365	Missense_Mutation	SNP	A	TCGA-B0-5109-01A-02D-1421-08	21015669	22820365	168333911	11	10838											
PTGER4	5734	hgsc.bcm.edu;ucsc.edu	37	5	40692474	40692475	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	-	40692475	TA	-	40692474	7	5	167	1	0	1	0	1	0	0	0	0	12756	1644	57	0	1467	0	PTGER4	5	40692474	Frame_Shift_Del	DEL	TA	TCGA-B0-5109-01A-02D-1421-08		40692474	140222786	12	10839											
TRIM36	55521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	114513529	114513529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	114513529	C	T	114513529	3	4	167	1	0	0	0	0	1	0	0	0	16522	652	23	1	2369	1	TRIM36	5	114513529	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08	73821055	114513529	66401731	13	10840											
PCDHGB3	56102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140750550	140750550	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	140750550	A	T	140750550	4	4	167	1	0	0	0	0	0	1	0	0	11571	247	9	5	591	5	PCDHGB3	5	140750550	Nonsense_Mutation	SNP	A	TCGA-B0-5109-01A-02D-1421-08	26237021	140750550	40164710	14	10841											
CCNJL	79616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	159680467	159680467	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	C	159680467	G	C	159680467	3	2	167	1	0	0	0	0	1	0	0	0	2931	1232	43	4	85	4	CCNJL	5	159680467	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08	18929917	159680467	21234793	15	10842											
PNPLA1	285848	broad.mit.edu	37	6	36259314	36259314	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	36259314	T	T	36259314	3	4	167	1	0	0	0	0	1	0	0	0	12171	991	35	4	429	4	PNPLA1	6	36259314	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08		36259314	134855753	16	10843											
MAP7	9053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	136682267	136682267	+	Missense_Mutation	SNP	C	C	T	rs35107962	bycluster;byfrequency;alternate_allele	TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	136682267	C	T	136682267	3	4	167	1	0	0	0	0	1	0	0	0	9273	768	27	1	700	1	MAP7	6	136682267	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08	100422953	136682267	34432800	17	10844											
MIOS	54468	hgsc.bcm.edu;ucsc.edu	37	7	7635995	7635995	+	Silent	SNP	G	G	T	rs115055951	byfrequency;by1000genomes;alternate_allele	TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	7635995	G	T	7635995	2	4	167	1	0	0	0	0	0	0	0	1	9596	1045	37	4		4	MIOS	7	7635995	Silent	SNP	G	TCGA-B0-5109-01A-02D-1421-08		7635995	151502668	18	10845											
HNRNPA2B1	3181	hgsc.bcm.edu	37	7	26235512	26235512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	26235512	G	T	26235512	3	4	167	1	0	0	0	0	1	0	0	0	7266	1145	40	4	365	4	HNRNPA2B1	7	26235512	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08	18599517	26235512	132903151	19	10846											
IKZF1	10320	broad.mit.edu	37	7	50467716	50467716	+	Silent	SNP	C	T	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	50467716	T	T	50467716	2	4	167	1	0	0	0	0	0	0	0	1	7621	535	19	1		1	IKZF1	7	50467716	Silent	SNP	C	TCGA-B0-5109-01A-02D-1421-08	24232204	50467716	108670947	20	10847											
FKBP6	8468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	72745747	72745747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	72745747	C	T	72745747	3	4	167	1	0	0	0	0	1	0	0	0	5919	884	31	1	620	1	FKBP6	7	72745747	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08	22278031	72745747	86392916	21	10848											
ZSCAN21	7589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99662005	99662005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	99662005	G	A	99662005	3	1	167	1	0	0	0	0	1	0	0	0	18245	971	34	2	1197	2	ZSCAN21	7	99662005	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08	26916258	99662005	59476658	22	10849											
PODXL	5420	broad.mit.edu;hgsc.bcm.edu	37	7	131194328	131194328	+	Silent	SNP	C	C	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	131194328	C	T	131194328	2	4	167	1	0	0	0	0	0	0	0	1	12187	755	27	1		1	PODXL	7	131194328	Silent	SNP	C	TCGA-B0-5109-01A-02D-1421-08	31532323	131194328	27944335	23	10850											
PRKAG2	51422	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151262817	151262817	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	C	151262817	A	C	151262817	3	2	167	1	0	0	0	0	1	0	0	0	12511	159	6	5	341	5	PRKAG2	7	151262817	Missense_Mutation	SNP	A	TCGA-B0-5109-01A-02D-1421-08	20068489	151262817	7875846	24	10851											
CHD7	55636	hgsc.bcm.edu	37	8	61777948	61777948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	G	61777948	A	G	61777948	3	3	167	1	0	0	0	0	1	0	0	0	3332	101	4	3	8596	3	CHD7	8	61777948	Missense_Mutation	SNP	A	TCGA-B0-5109-01A-02D-1421-08		61777948	84586074	25	10852											
CLVS1	157807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	62212433	62212433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	62212433	G	T	62212433	3	4	167	1	0	0	0	0	1	0	0	0	3573	1357	47	4	49	4	CLVS1	8	62212433	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08	434485	62212433	84151589	26	10853											
VPS13A	23230	hgsc.bcm.edu;ucsc.edu	37	9	79908261	79908261	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	-	79908261	T	-	79908261	7	5	167	1	0	1	0	1	0	0	0	0	17201	1725	60	0	3470	0	VPS13A	9	79908261	Frame_Shift_Del	DEL	T	TCGA-B0-5109-01A-02D-1421-08		79908261	61305170	27	10854											
OMD	4958	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95177538	95177538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	95177538	C	A	95177538	3	1	167	1	0	0	0	0	1	0	0	0	10872	826	29	4	107	4	OMD	9	95177538	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08	15269277	95177538	46035893	28	10855											
ABCA1	19	broad.mit.edu;ucsc.edu	37	9	107558370	107558370	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	C	107558370	C	C	107558370	3	2	167	1	0	0	0	0	1	0	0	0	28	1078	38	4	1487	4	ABCA1	9	107558370	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08	12380832	107558370	33655061	29	10856											
SPTAN1	6709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131345086	131345086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	C	131345086	G	C	131345086	3	2	167	1	0	0	0	0	1	0	0	0	15129	1241	43	4	1814	4	SPTAN1	9	131345086	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08	23786716	131345086	9868345	30	10857											
ABCA2	20	broad.mit.edu;hgsc.bcm.edu	37	9	139909971	139909971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	139909971	C	A	139909971	3	1	167	1	0	0	0	0	1	0	0	0	32	594	21	4	3822	4	ABCA2	9	139909971	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08	8564885	139909971	1303460	31	10858											
PCDH15	65217	broad.mit.edu	37	10	55944912	55944912	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	55944912	A	A	55944912	3	1	167	1	0	0	0	0	1	0	0	0	11518	796	28	4	6152	4	PCDH15	10	55944912	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08		55944912	79589835	32	10859											
HECTD2	143279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	93258806	93258806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	93258806	G	A	93258806	3	1	167	1	0	0	0	0	1	0	0	0	7047	1377	48	2	1943	2	HECTD2	10	93258806	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08	37313894	93258806	42275941	33	10860											
IPO7	10527	broad.mit.edu;hgsc.bcm.edu	37	11	9446754	9446754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	9446754	G	A	9446754	3	1	167	1	0	0	0	0	1	0	0	0	7804	1058	37	1	1326	1	IPO7	11	9446754	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08		9446754	125559762	34	10861											
LRP5	4041	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	68125161	68125161	+	Silent	SNP	C	C	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	68125161	C	A	68125161	2	1	167	1	0	0	0	0	0	0	0	1	8967	759	27	4		4	LRP5	11	68125161	Silent	SNP	C	TCGA-B0-5109-01A-02D-1421-08	58678407	68125161	66881355	35	10862											
GPR162	27239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6936017	6936017	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	6936017	A	T	6936017	3	4	167	1	0	0	0	0	1	0	0	0	6673	246	9	5	1448	5	GPR162	12	6936017	Missense_Mutation	SNP	A	TCGA-B0-5109-01A-02D-1421-08		6936017	126915878	36	10863											
LUM	4060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	91502697	91502697	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	C	91502697	G	C	91502697	4	2	167	1	0	0	0	0	0	1	0	0	9092	1024	36	4	964	4	LUM	12	91502697	Nonsense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08	84566680	91502697	42349198	37	10864											
ANO4	121601	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	101504334	101504334	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	C	101504334	G	C	101504334	3	2	167	1	0	0	0	0	1	0	0	0	699	1014	35	4	2279	4	ANO4	12	101504334	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08	10001637	101504334	32347561	38	10865											
MYCBP2	23077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	77817235	77817235	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	G	77817235	C	G	77817235	3	3	167	1	0	0	0	0	1	0	0	0	10025	652	23	4	11716	4	MYCBP2	13	77817235	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08		77817235	37352643	39	10866											
MYH7	4625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23890215	23890215	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	23890215	A	T	23890215	3	4	167	1	0	0	0	0	1	0	0	0	10046	214	8	5	2579	5	MYH7	14	23890215	Missense_Mutation	SNP	A	TCGA-B0-5109-01A-02D-1421-08		23890215	83459325	40	10867											
ARID4A	5926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58831552	58831552	+	Silent	SNP	A	A	C	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	C	58831552	A	C	58831552	2	2	167	1	0	0	0	0	0	0	0	1	919	410	15	5		5	ARID4A	14	58831552	Silent	SNP	A	TCGA-B0-5109-01A-02D-1421-08	34941337	58831552	48517988	41	10868											
CSPG4	1464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75977757	75977757	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	C	75977757	G	C	75977757	3	2	167	1	0	0	0	0	1	0	0	0	3962	1232	43	4	2921	4	CSPG4	15	75977757	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08		75977757	26553635	42	10869											
ATF7IP2	80063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	10525162	10525162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	10525162	G	T	10525162	3	4	167	1	0	0	0	0	1	0	0	0	1088	1377	48	4	687	4	ATF7IP2	16	10525162	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08		10525162	79829591	43	10870											
DDX28	55794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68055772	68055772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	C	68055772	T	C	68055772	3	2	167	1	0	0	0	0	1	0	0	0	4357	1609	56	3	292	3	DDX28	16	68055772	Missense_Mutation	SNP	T	TCGA-B0-5109-01A-02D-1421-08	57530610	68055772	22298981	44	10871											
DNAH2	146754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7701105	7701105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	7701105	G	A	7701105	3	1	167	1	0	0	0	0	1	0	0	0	4604	1145	40	1	8394	1	DNAH2	17	7701105	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08		7701105	73494105	45	10872											
SOX9	6662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	70119701	70119701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	G	70119701	C	G	70119701	3	3	167	1	0	0	0	0	1	0	0	0	14971	507	18	4	713	4	SOX9	17	70119701	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08	62418596	70119701	11075509	46	10873											
USH1G	124590	broad.mit.edu	37	17	72919137	72919137	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	G	72919137	G	G	72919137	3	3	167	1	0	0	0	0	1	0	0	0	17047	1435	50	5	1365	5	USH1G	17	72919137	Missense_Mutation	SNP	T	TCGA-B0-5109-01A-02D-1421-08	2799436	72919137	8276073	47	10874											
SLC39A6	25800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	33689577	33689577	+	Silent	SNP	G	G	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	33689577	G	A	33689577	2	1	167	1	0	0	0	0	0	0	0	1	14635	1048	37	1		1	SLC39A6	18	33689577	Silent	SNP	G	TCGA-B0-5109-01A-02D-1421-08		33689577	44387671	48	10875											
ZNF180	7733	hgsc.bcm.edu;ucsc.edu	37	19	44982265	44982265	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	-	44982265	C	-	44982265	7	5	167	1	0	1	0	1	0	0	0	0	17760	855	30	0	1649	0	ZNF180	19	44982265	Frame_Shift_Del	DEL	C	TCGA-B0-5109-01A-02D-1421-08		44982265	14146718	49	10876											
CSE1L	1434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47682942	47682942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	47682942	C	A	47682942	3	1	167	1	0	0	0	0	1	0	0	0	3932	594	21	4	385	4	CSE1L	20	47682942	Missense_Mutation	SNP	C	TCGA-B0-5109-01A-02D-1421-08		47682942	15342578	50	10877											
RSPH1	89765	hgsc.bcm.edu;ucsc.edu	37	21	43897417	43897417	+	Silent	SNP	G	G	A	rs75626002	byfrequency	TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	43897417	G	A	43897417	2	1	167	1	0	0	0	0	0	0	0	1	13715	1136	40	1		1	RSPH1	21	43897417	Silent	SNP	G	TCGA-B0-5109-01A-02D-1421-08		43897417	4232478	51	10878											
TRIOBP	11078	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	38151617	38151617	+	Nonsense_Mutation	SNP	G	G	T	rs185078175	by1000genomes;alternate_allele	TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	T	38151617	G	T	38151617	4	4	167	1	0	0	0	0	0	1	0	0	16565	1059	37	4	5875	4	TRIOBP	22	38151617	Nonsense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08		38151617	13152949	52	10879											
CHST7	56548	broad.mit.edu	37	X	46433704	46433704	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5109-01A-02D-1421-08	TCGA-B0-5109-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58d6e408-ed00-4e1f-bffa-e73250cfe4a0	d6cfdaff-0147-415a-8b30-aaa03a3a5aee	A	46433704	A	A	46433704	3	1	167	1	0	0	0	0	1	0	0	0	3411	1203	42	2	340	2	CHST7	23	46433704	Missense_Mutation	SNP	G	TCGA-B0-5109-01A-02D-1421-08		46433704	108836856	53	10880											
AGRN	375790	broad.mit.edu	37	1	985094	985094	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	985094	-	-	985094	7	5	168	1	0	1	0	1	0	0	0	0	397	739	26	0	4765	0	AGRN	1	985094	Frame_Shift_Del	DEL	C	TCGA-B0-5110-01A-01D-1421-08		985094	248265527	1	10881											
KIAA0319L	79932	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35917273	35917273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	35917273	C	T	35917273	3	4	168	1	0	0	0	0	1	0	0	0	8176	681	24	2	1167	2	KIAA0319L	1	35917273	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	34932179	35917273	213333348	2	10882											
CLCA1	1179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	86947888	86947888	+	Silent	SNP	A	A	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	G	86947888	A	G	86947888	2	3	168	1	0	0	0	0	0	0	0	1	3459	347	12	3		3	CLCA1	1	86947888	Silent	SNP	A	TCGA-B0-5110-01A-01D-1421-08	51030615	86947888	162302733	3	10883											
PRMT6	55170	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	107599560	107599560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	107599560	C	A	107599560	3	1	168	1	0	0	0	0	1	0	0	0	12550	681	24	4	225	4	PRMT6	1	107599560	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	20651672	107599560	141651061	4	10884											
KRTCAP2	200185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155145769	155145771	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	155145771	CTA	-	155145769	7	5	168	1	0	1	0	1	0	0	0	0	8585	797	28	0	498	0	KRTCAP2	1	155145769	In_Frame_Del	DEL	CTA	TCGA-B0-5110-01A-01D-1421-08	47546209	155145769	94104852	5	10885											
GBA	2629	broad.mit.edu	37	1	155205493	155205493	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	155205493	T	T	155205493	3	4	168	1	0	0	0	0	1	0	0	0	6273	246	9	5	255	5	GBA	1	155205493	Missense_Mutation	SNP	A	TCGA-B0-5110-01A-01D-1421-08	59724	155205493	94045128	6	10886											
FAM5B	57795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	177250548	177250548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	177250548	C	T	177250548	3	4	168	1	0	0	0	0	1	0	0	0	5600	643	23	1	2262	1	FAM5B	1	177250548	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	22045055	177250548	72000073	7	10887											
SIPA1L2	57568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	232538143	232538143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	232538143	G	A	232538143	3	1	168	1	0	0	0	0	1	0	0	0	14343	1057	37	1	159	1	SIPA1L2	1	232538143	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	55287595	232538143	16712478	8	10888											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32631593	32631593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	32631593	G	A	32631593	3	1	168	1	0	0	0	0	1	0	0	0	1438	1029	36	2	1479	2	BIRC6	2	32631593	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08		32631593	210567780	9	10889											
EHBP1	23301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	63101527	63101527	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	63101527	T	A	63101527	3	1	168	1	0	0	0	0	1	0	0	0	4977	1838	64	5	1188	5	EHBP1	2	63101527	Missense_Mutation	SNP	T	TCGA-B0-5110-01A-01D-1421-08	30469934	63101527	180097846	10	10890											
KDM3A	55818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	86712976	86712976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	86712976	G	A	86712976	3	1	168	1	0	0	0	0	1	0	0	0	8133	1319	46	2	3385	2	KDM3A	2	86712976	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	23611449	86712976	156486397	11	10891											
THSD7B	80731	hgsc.bcm.edu;ucsc.edu	37	2	137917883	137917884	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	137917884	GT	-	137917883	7	5	168	1	0	1	0	1	0	0	0	0	15892	1270	44	0	1395	0	THSD7B	2	137917883	Frame_Shift_Del	DEL	GT	TCGA-B0-5110-01A-01D-1421-08	51204907	137917883	105281490	12	10892											
GLB1	2720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33093265	33093265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	33093265	A	C	33093265	3	2	168	1	0	0	0	0	1	0	0	0	6434	14	1	5	1125	5	GLB1	3	33093265	Missense_Mutation	SNP	A	TCGA-B0-5110-01A-01D-1421-08		33093265	164929165	13	10893											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52595863	52595864	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	TC	TC	TC	-	TC	TC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	52595864	TC	-	52595863	7	5	168	1	0	1	0	1	0	0	0	0	11498	1667	58	0	716	0	PBRM1	3	52595863	Frame_Shift_Del	DEL	TC	TCGA-B0-5110-01A-01D-1421-08	19502598	52595863	145426567	14	10894											
KLHL6	89857	broad.mit.edu;ucsc.edu	37	3	183211912	183211912	+	Silent	SNP	G	T	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	183211912	T	T	183211912	2	4	168	1	0	0	0	0	0	0	0	1	8400	1280	45	4		4	KLHL6	3	183211912	Silent	SNP	G	TCGA-B0-5110-01A-01D-1421-08	130616049	183211912	14810518	15	10895											
HGFAC	3083	broad.mit.edu;ucsc.edu	37	4	3446996	3446996	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	3446996	-	-	3446996	7	5	168	1	0	1	0	1	0	0	0	0	7093	855	30	0	1055	0	HGFAC	4	3446996	Frame_Shift_Del	DEL	C	TCGA-B0-5110-01A-01D-1421-08		3446996	187707280	16	10896											
MAN2B2	23324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	6611625	6611625	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	6611625	G	C	6611625	3	2	168	1	0	0	0	0	1	0	0	0	9224	1175	41	4	2157	4	MAN2B2	4	6611625	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	3164629	6611625	184542651	17	10897											
KCTD8	386617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	44450161	44450161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	44450161	T	C	44450161	3	2	168	1	0	0	0	0	1	0	0	0	8122	1609	56	3	1049	3	KCTD8	4	44450161	Missense_Mutation	SNP	T	TCGA-B0-5110-01A-01D-1421-08	37838536	44450161	146704115	18	10898											
OTUD4	54726	broad.mit.edu;hgsc.bcm.edu	37	4	146063450	146063450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	146063450	G	A	146063450	3	1	168	1	0	0	0	0	1	0	0	0	11321	1174	41	2	1640	2	OTUD4	4	146063450	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	101613289	146063450	45090826	19	10899											
CCNC	892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	100009547	100009547	+	Silent	SNP	T	T	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	100009547	T	A	100009547	2	1	168	1	0	0	0	0	0	0	0	1	2917	1451	51	5		5	CCNC	6	100009547	Silent	SNP	T	TCGA-B0-5110-01A-01D-1421-08		100009547	71105520	20	10900											
KATNA1	11104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	149944376	149944376	+	Missense_Mutation	SNP	C	C	A	rs142263647	alternate_allele	TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	149944376	C	A	149944376	3	1	168	1	0	0	0	0	1	0	0	0	7991	826	29	4	1143	4	KATNA1	6	149944376	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	49934829	149944376	21170691	21	10901											
AKAP9	10142	hgsc.bcm.edu;ucsc.edu	37	7	91708532	91708532	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	91708532	A	-	91708532	7	5	168	1	0	1	0	1	0	0	0	0	459	246	9	0	7207	0	AKAP9	7	91708532	Frame_Shift_Del	DEL	A	TCGA-B0-5110-01A-01D-1421-08		91708532	67430131	22	10902											
SOX7	83595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	10583337	10583337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	10583337	C	A	10583337	3	1	168	1	0	0	0	0	1	0	0	0	14969	507	18	4	92	4	SOX7	8	10583337	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08		10583337	135780685	23	10903											
HR	55806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	21985225	21985225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	21985225	C	A	21985225	4	1	168	1	0	0	0	0	0	1	0	0	7354	893	31	4	2907	4	HR	8	21985225	Nonsense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	11401888	21985225	124378797	24	10904											
PURG	29942	broad.mit.edu	37	8	30889379	30889379	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	G	30889379	G	G	30889379	3	3	168	1	0	0	0	0	1	0	0	0	12842	595	21	4	236	4	PURG	8	30889379	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	8904154	30889379	115474643	25	10905											
LRRCC1	85444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	86047101	86047101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	G	86047101	A	G	86047101	3	3	168	1	0	0	0	0	1	0	0	0	9033	101	4	3	2038	3	LRRCC1	8	86047101	Missense_Mutation	SNP	A	TCGA-B0-5110-01A-01D-1421-08	55157722	86047101	60316921	26	10906											
BSPRY	54836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	116132237	116132237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	116132237	C	A	116132237	3	1	168	1	0	0	0	0	1	0	0	0	1534	710	25	4	1046	4	BSPRY	9	116132237	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08		116132237	25081194	27	10907											
FAM21B	55747	hgsc.bcm.edu	37	10	47909179	47909181	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	ATA	ATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	47909181	ATA	-	47909179	7	5	168	1	0	1	0	1	0	0	0	0	5545	333	12	0	787	0	FAM21B	10	47909179	In_Frame_Del	DEL	ATA	TCGA-B0-5110-01A-01D-1421-08		47909179	87625568	28	10908											
MYOF	26509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	95076526	95076526	+	Silent	SNP	G	G	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	95076526	G	C	95076526	2	2	168	1	0	0	0	0	0	0	0	1	10096	1335	47	4		4	MYOF	10	95076526	Silent	SNP	G	TCGA-B0-5110-01A-01D-1421-08	47167347	95076526	40458221	29	10909											
PIK3AP1	118788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	98405300	98405300	+	Silent	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	98405300	G	A	98405300	2	1	168	1	0	0	0	0	0	0	0	1	11915	1277	45	2		2	PIK3AP1	10	98405300	Silent	SNP	G	TCGA-B0-5110-01A-01D-1421-08	3328774	98405300	37129447	30	10910											
C10orf62	414157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99350271	99350271	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	99350271	G	C	99350271	3	2	168	1	0	0	0	0	1	0	0	0	1613	1029	36	4	619	4	C10orf62	10	99350271	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	944971	99350271	36184476	31	10911											
ADD3	120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	111877147	111877147	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	111877147	C	T	111877147	2	4	168	1	0	0	0	0	0	0	0	1	306	726	26	2		2	ADD3	10	111877147	Silent	SNP	C	TCGA-B0-5110-01A-01D-1421-08	12526876	111877147	23657600	32	10912											
OR5D14	219436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55563209	55563209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	55563209	C	A	55563209	3	1	168	1	0	0	0	0	1	0	0	0	11162	855	30	4	180	4	OR5D14	11	55563209	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08		55563209	79443307	33	10913											
OR5T2	219464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55999686	55999686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	55999686	G	T	55999686	3	4	168	1	0	0	0	0	1	0	0	0	11189	1174	41	4	102	4	OR5T2	11	55999686	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	436477	55999686	79006830	34	10914											
ZFPL1	7542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64854837	64854837	+	Silent	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	64854837	C	A	64854837	2	1	168	1	0	0	0	0	0	0	0	1	17668	842	30	4		4	ZFPL1	11	64854837	Silent	SNP	C	TCGA-B0-5110-01A-01D-1421-08	8855151	64854837	70151679	35	10915											
OAF	220323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	120096481	120096481	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	120096481	G	T	120096481	4	4	168	1	0	0	0	0	0	1	0	0	10805	1291	45	4	349	4	OAF	11	120096481	Nonsense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	55241644	120096481	14910035	36	10916											
CCDC15	80071	hgsc.bcm.edu;ucsc.edu	37	11	124824706	124824706	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	124824706	G	-	124824706	7	5	168	1	0	1	0	1	0	0	0	0	2786	991	35	0	80	0	CCDC15	11	124824706	Frame_Shift_Del	DEL	G	TCGA-B0-5110-01A-01D-1421-08	4728225	124824706	10181810	37	10917											
FGF6	2251	broad.mit.edu	37	12	4554409	4554409	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	4554409	T	T	4554409	3	4	168	1	0	0	0	0	1	0	0	0	5863	1348	47	4	310	4	FGF6	12	4554409	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08		4554409	129297486	38	10918											
ABCC9	10060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21968702	21968702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	21968702	G	T	21968702	3	4	168	1	0	0	0	0	1	0	0	0	59	1386	48	4	801	4	ABCC9	12	21968702	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	17414293	21968702	111883193	39	10919											
BCDIN3D	144233	broad.mit.edu	37	12	50236870	50236870	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	50236870	A	A	50236870	3	1	168	1	0	0	0	0	1	0	0	0	1357	1493	52	5	885	5	BCDIN3D	12	50236870	Missense_Mutation	SNP	T	TCGA-B0-5110-01A-01D-1421-08	28268168	50236870	83615025	40	10920											
VEZT	55591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	95676229	95676229	+	Silent	SNP	A	A	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	G	95676229	A	G	95676229	2	3	168	1	0	0	0	0	0	0	0	1	17168	69	3	3		3	VEZT	12	95676229	Silent	SNP	A	TCGA-B0-5110-01A-01D-1421-08	45439359	95676229	38175666	41	10921											
OAS3	4940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113379477	113379477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	113379477	C	T	113379477	3	4	168	1	0	0	0	0	1	0	0	0	10808	652	23	1	286	1	OAS3	12	113379477	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	17703248	113379477	20472418	42	10922											
ANAPC5	51433	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121758187	121758187	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	121758187	C	A	121758187	5	1	168	1	0	0	0	0	0	0	1	0	605	521	18	4	775	4	ANAPC5	12	121758187	Splice_Site	SNP	C	TCGA-B0-5110-01A-01D-1421-08	8378710	121758187	12093708	43	10923											
HIP1R	9026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123343990	123343990	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	123343990	C	T	123343990	2	4	168	1	0	0	0	0	0	0	0	1	7122	738	26	2		2	HIP1R	12	123343990	Silent	SNP	C	TCGA-B0-5110-01A-01D-1421-08	1585803	123343990	10507905	44	10924											
SLC7A1	6541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	30098300	30098300	+	Silent	SNP	G	G	A	rs138795948	byfrequency	TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	30098300	G	A	30098300	2	1	168	1	0	0	0	0	0	0	0	1	14705	987	35	2		2	SLC7A1	13	30098300	Silent	SNP	G	TCGA-B0-5110-01A-01D-1421-08		30098300	85071578	45	10925											
C13orf23	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	39587314	39587314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	39587314	G	A	39587314	3	1	168	1	0	0	0	0	1	0	0	0	1723	1348	47	2	771	2	C13orf23	13	39587314	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	9489014	39587314	75582564	46	10926											
KBTBD7	84078	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	41767262	41767262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	41767262	G	T	41767262	3	4	168	1	0	0	0	0	1	0	0	0	8005	1290	45	4	926	4	KBTBD7	13	41767262	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	2179948	41767262	73402616	47	10927											
MYO16	23026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	109672228	109672228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	109672228	C	T	109672228	3	4	168	1	0	0	0	0	1	0	0	0	10071	478	17	2	2785	2	MYO16	13	109672228	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	67904966	109672228	5497650	48	10928											
EIF5	1983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	103802419	103802419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	103802419	T	C	103802419	3	2	168	1	0	0	0	0	1	0	0	0	5042	1725	60	3	125	3	EIF5	14	103802419	Missense_Mutation	SNP	T	TCGA-B0-5110-01A-01D-1421-08		103802419	3547121	49	10929											
TYRO3	7301	hgsc.bcm.edu	37	15	41865311	41865311	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	41865311	T	C	41865311	5	2	168	1	0	0	0	0	0	0	1	0	16826	1652	57	3	2049	3	TYRO3	15	41865311	Splice_Site	SNP	T	TCGA-B0-5110-01A-01D-1421-08		41865311	60666081	50	10930											
AGBL1	123624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	86838616	86838616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	86838616	G	C	86838616	3	2	168	1	0	0	0	0	1	0	0	0	375	1029	36	4	2271	4	AGBL1	15	86838616	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	44973305	86838616	15692776	51	10931											
ERI2	112479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	20802204	20802204	+	Silent	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	20802204	C	A	20802204	2	1	168	1	0	0	0	0	0	0	0	1	5230	610	22	4		4	ERI2	16	20802204	Silent	SNP	C	TCGA-B0-5110-01A-01D-1421-08		20802204	69552549	52	10932											
SBK1	388228	broad.mit.edu	37	16	28331871	28331871	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	28331871	T	T	28331871	3	4	168	1	0	0	0	0	1	0	0	0	13873	768	27	1	914	1	SBK1	16	28331871	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	7529667	28331871	62022882	53	10933											
SLC5A2	6524	broad.mit.edu	37	16	31496212	31496212	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	G	31496212	G	G	31496212	3	3	168	1	0	0	0	0	1	0	0	0	14678	72	3	3	281	3	SLC5A2	16	31496212	Missense_Mutation	SNP	A	TCGA-B0-5110-01A-01D-1421-08	3164341	31496212	58858541	54	10934											
CHD9	80205	hgsc.bcm.edu;ucsc.edu	37	16	53296952	53296952	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	53296952	C	-	53296952	7	5	168	1	0	1	0	1	0	0	0	0	3334	564	20	0	4337	0	CHD9	16	53296952	Frame_Shift_Del	DEL	C	TCGA-B0-5110-01A-01D-1421-08	21800740	53296952	37057801	55	10935											
AMAC1L3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7385621	7385621	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	7385621	C	T	7385621	2	4	168	1	0	0	0	0	0	0	0	1	561	912	32	2		2	AMAC1L3	17	7385621	Silent	SNP	C	TCGA-B0-5110-01A-01D-1421-08		7385621	73809589	56	10936											
C17orf68	0	hgsc.bcm.edu	37	17	8139457	8139458	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	8139458	-	T	8139457	7	5	168	1	0	1	1	0	0	0	0	0	1878	796	28	0	2729	0	C17orf68	17	8139457	Frame_Shift_Ins	INS	-	TCGA-B0-5110-01A-01D-1421-08	753836	8139457	73055753	57	10937											
MYH2	4620	hgsc.bcm.edu;ucsc.edu	37	17	10427079	10427079	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	10427079	A	-	10427079	7	5	168	1	0	1	0	1	0	0	0	0	10042	175	7	0	547	0	MYH2	17	10427079	Frame_Shift_Del	DEL	A	TCGA-B0-5110-01A-01D-1421-08	2287622	10427079	70768131	58	10938											
CACNB1	782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37333729	37333729	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	37333729	C	T	37333729	2	4	168	1	0	0	0	0	0	0	0	1	2554	639	23	1		1	CACNB1	17	37333729	Silent	SNP	C	TCGA-B0-5110-01A-01D-1421-08	26906650	37333729	43861481	59	10939											
ERBB2	2064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37866350	37866350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	37866350	G	A	37866350	3	1	168	1	0	0	0	0	1	0	0	0	5208	1377	48	2	677	2	ERBB2	17	37866350	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	532621	37866350	43328860	60	10940											
HOXB4	3214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	46654154	46654154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	46654154	C	T	46654154	3	4	168	1	0	0	0	0	1	0	0	0	7310	768	27	1	73	1	HOXB4	17	46654154	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	8787804	46654154	34541056	61	10941											
CCBE1	147372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	57136800	57136800	+	Missense_Mutation	SNP	C	C	T	rs121908251	alternate_allele	TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	57136800	C	T	57136800	3	4	168	1	0	0	0	0	1	0	0	0	2733	710	25	2	947	2	CCBE1	18	57136800	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08		57136800	20940448	62	10942											
QTRT1	81890	hgsc.bcm.edu;ucsc.edu	37	19	10818039	10818039	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	10818039	G	-	10818039	7	5	168	1	0	1	0	1	0	0	0	0	12898	1335	47	0	527	0	QTRT1	19	10818039	Frame_Shift_Del	DEL	G	TCGA-B0-5110-01A-01D-1421-08		10818039	48310944	63	10943											
OR7A10	390892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14952067	14952067	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	G	14952067	C	G	14952067	3	3	168	1	0	0	0	0	1	0	0	0	11221	507	18	4	310	4	OR7A10	19	14952067	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	4134028	14952067	44176916	64	10944											
ILVBL	10994	broad.mit.edu;hgsc.bcm.edu	37	19	15227242	15227242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	15227242	G	T	15227242	3	4	168	1	0	0	0	0	1	0	0	0	7722	1252	44	4	644	4	ILVBL	19	15227242	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01D-1421-08	275175	15227242	43901741	65	10945											
ZSCAN5A	79149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56732944	56732944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	56732944	T	C	56732944	3	2	168	1	0	0	0	0	1	0	0	0	18250	1448	50	3	3	3	ZSCAN5A	19	56732944	Missense_Mutation	SNP	T	TCGA-B0-5110-01A-01D-1421-08	41505702	56732944	2396039	66	10946											
SLC7A4	6545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21385823	21385823	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	21385823	C	T	21385823	2	4	168	1	0	0	0	0	0	0	0	1	14712	610	22	2		2	SLC7A4	22	21385823	Silent	SNP	C	TCGA-B0-5110-01A-01D-1421-08		21385823	29918743	67	10947											
MXRA5	25878	hgsc.bcm.edu;ucsc.edu	37	X	3240485	3240494	+	Frame_Shift_Del	DEL	TGGAGTGTGT	TGGAGTGTGT	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	TGGAGTGTGT	TGGAGTGTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	-	3240494	TGGAGTGTGT	-	3240485	7	5	168	1	0	1	0	1	0	0	0	0	10010	1588	55	0	5257	0	MXRA5	23	3240485	Frame_Shift_Del	DEL	TGGAGTGTGT	TCGA-B0-5110-01A-01D-1421-08		3240485	152030075	68	10948											
BEND2	139105	broad.mit.edu;ucsc.edu	37	X	18219956	18219956	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	G	18219956	G	G	18219956	3	3	168	1	0	0	0	0	1	0	0	0	1398	478	17	4	1449	4	BEND2	23	18219956	Missense_Mutation	SNP	C	TCGA-B0-5110-01A-01D-1421-08	14979471	18219956	137050604	69	10949											
PABPC5	140886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	90691350	90691350	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	T	90691350	C	T	90691350	2	4	168	1	0	0	0	0	0	0	0	1	11374	564	20	2		2	PABPC5	23	90691350	Silent	SNP	C	TCGA-B0-5110-01A-01D-1421-08	72471394	90691350	64579210	70	10950											
ODZ1	0	hgsc.bcm.edu	37	X	123654451	123654452	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	G	123654452	-	G	123654451	7	5	168	1	0	1	1	0	0	0	0	0	10841	768	27	0	5041	0	ODZ1	23	123654451	Frame_Shift_Ins	INS	-	TCGA-B0-5110-01A-01D-1421-08	32963101	123654451	31616109	71	10951											
GABRQ	55879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151818948	151818948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	C	151818948	T	C	151818948	3	2	168	1	0	0	0	0	1	0	0	0	6182	1609	56	3	832	3	GABRQ	23	151818948	Missense_Mutation	SNP	T	TCGA-B0-5110-01A-01D-1421-08	28164497	151818948	3451612	72	10952											
SLC6A8	6535	broad.mit.edu	37	X	152954167	152954167	+	Silent	SNP	C	A	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	A	152954167	A	A	152954167	2	1	168	1	0	0	0	0	0	0	0	1	14703	726	26	4		4	SLC6A8	23	152954167	Silent	SNP	C	TCGA-B0-5110-01A-01D-1421-08	1135219	152954167	2316393	73	10953											
VHL	7428	hgsc.bcm.edu	37	3	10183794	10183794	+	Missense_Mutation	SNP	G	G	T	rs119103277	alternate_allele	TCGA-B0-5110-01A-01W-1475-10	TCGA-B0-5110-11A-01W-1475-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	0399f90c-5559-4133-bb49-6c173550d76a	5f350c92-67ce-4ba9-91a3-9ea27f65a2e4	T	10183794	G	T	10183794	3	4	169	1	0	0	0	0	1	0	0	0	17174	1357	47	4	265	4	VHL	3	10183794	Missense_Mutation	SNP	G	TCGA-B0-5110-01A-01W-1475-10		10183794	187838636	1	10954											
DNALI1	7802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	38022628	38022628	+	Silent	SNP	C	C	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	38022628	C	T	38022628	2	4	170	1	0	0	0	0	0	0	0	1	4661	547	19	1		1	DNALI1	1	38022628	Silent	SNP	C	TCGA-B0-5113-01A-01D-1421-08		38022628	211227993	1	10955											
CACHD1	57685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	65143848	65143848	+	Silent	SNP	T	T	C	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	C	65143848	T	C	65143848	2	2	170	1	0	0	0	0	0	0	0	1	2539	1731	60	3		3	CACHD1	1	65143848	Silent	SNP	T	TCGA-B0-5113-01A-01D-1421-08	27121220	65143848	184106773	2	10956											
ZZZ3	26009	broad.mit.edu;hgsc.bcm.edu	37	1	78045311	78045311	+	Silent	SNP	T	T	C	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	C	78045311	T	C	78045311	2	2	170	1	0	0	0	0	0	0	0	1	18268	1838	64	3		3	ZZZ3	1	78045311	Silent	SNP	T	TCGA-B0-5113-01A-01D-1421-08	12901463	78045311	171205310	3	10957											
NEXN	91624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78383401	78383401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	78383401	C	A	78383401	3	1	170	1	0	0	0	0	1	0	0	0	10362	479	17	4	184	4	NEXN	1	78383401	Missense_Mutation	SNP	C	TCGA-B0-5113-01A-01D-1421-08	338090	78383401	170867220	4	10958											
DNTTIP2	30836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94335473	94335473	+	Silent	SNP	G	G	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	94335473	G	A	94335473	2	1	170	1	0	0	0	0	0	0	0	1	4684	1280	45	2		2	DNTTIP2	1	94335473	Silent	SNP	G	TCGA-B0-5113-01A-01D-1421-08	15952072	94335473	154915148	5	10959											
B4GALT3	8703	hgsc.bcm.edu;ucsc.edu	37	1	161141850	161141851	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	161141851	-	A	161141850	7	5	170	1	0	1	1	0	0	0	0	0	1272	1174	41	0	247	0	B4GALT3	1	161141850	Frame_Shift_Ins	INS	-	TCGA-B0-5113-01A-01D-1421-08	66806377	161141850	88108771	6	10960											
CFH	3075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	196695938	196695938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	196695938	G	A	196695938	3	1	170	1	0	0	0	0	1	0	0	0	3285	1203	42	2	2176	2	CFH	1	196695938	Missense_Mutation	SNP	G	TCGA-B0-5113-01A-01D-1421-08	35554088	196695938	52554683	7	10961											
NR5A2	2494	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200014711	200014711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	C	200014711	A	C	200014711	3	2	170	1	0	0	0	0	1	0	0	0	10643	86	3	5	476	5	NR5A2	1	200014711	Missense_Mutation	SNP	A	TCGA-B0-5113-01A-01D-1421-08	3318773	200014711	49235910	8	10962											
REG1B	5968	hgsc.bcm.edu;ucsc.edu	37	2	79314032	79314032	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	-	79314032	G	-	79314032	7	5	170	1	0	1	0	1	0	0	0	0	13224	1000	35	0	427	0	REG1B	2	79314032	Frame_Shift_Del	DEL	G	TCGA-B0-5113-01A-01D-1421-08		79314032	163885341	9	10963											
NDUFS1	4719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	206997774	206997774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	206997774	C	A	206997774	3	1	170	1	0	0	0	0	1	0	0	0	10298	913	32	4	759	4	NDUFS1	2	206997774	Missense_Mutation	SNP	C	TCGA-B0-5113-01A-01D-1421-08	127683742	206997774	36201599	10	10964											
SP140L	93349	broad.mit.edu;hgsc.bcm.edu	37	2	231254640	231254640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	231254640	G	T	231254640	3	4	170	1	0	0	0	0	1	0	0	0	14976	942	33	4	908	4	SP140L	2	231254640	Missense_Mutation	SNP	G	TCGA-B0-5113-01A-01D-1421-08	24256866	231254640	11944733	11	10965	125	2									
SP140L	93349	broad.mit.edu;hgsc.bcm.edu	37	2	231254641	231254641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	231254641	A	T	231254641	3	4	170	1	0	0	0	0	1	0	0	0	14976	243	9	5	909	5	SP140L	2	231254641	Missense_Mutation	SNP	A	TCGA-B0-5113-01A-01D-1421-08	1	231254641	11944732	12	10966	125	2									
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10191470	10191470	+	Splice_Site	SNP	G	T	T	rs5030817	alternate_allele	TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	10191470	T	T	10191470	5	4	170	1	0	0	0	0	0	0	1	0	17174	1043	36	4	473	4	VHL	3	10191470	Splice_Site	SNP	G	TCGA-B0-5113-01A-01D-1421-08		10191470	187830960	13	10967											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52621519	52621519	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	-	52621519	T	-	52621519	7	5	170	1	0	1	0	1	0	0	0	0	11498	1490	52	0	1975	0	PBRM1	3	52621519	Frame_Shift_Del	DEL	T	TCGA-B0-5113-01A-01D-1421-08	42430049	52621519	145400911	14	10968											
PKD2L2	27039	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137275829	137275829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	137275829	G	T	137275829	3	4	170	1	0	0	0	0	1	0	0	0	11975	1058	37	4	1889	4	PKD2L2	5	137275829	Missense_Mutation	SNP	G	TCGA-B0-5113-01A-01D-1421-08		137275829	43639431	15	10969											
RNF145	153830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	158603776	158603776	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	C	158603776	A	C	158603776	3	2	170	1	0	0	0	0	1	0	0	0	13460	72	3	5	1534	5	RNF145	5	158603776	Missense_Mutation	SNP	A	TCGA-B0-5113-01A-01D-1421-08	21327947	158603776	22311484	16	10970											
HIST1H2BO	8348	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27861305	27861305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	27861305	C	T	27861305	3	4	170	1	0	0	0	0	1	0	0	0	7161	739	26	2	67	2	HIST1H2BO	6	27861305	Missense_Mutation	SNP	C	TCGA-B0-5113-01A-01D-1421-08		27861305	143253762	17	10971											
COL11A2	1302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33133477	33133477	+	Silent	SNP	G	G	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	33133477	G	A	33133477	2	1	170	1	0	0	0	0	0	0	0	1	3670	1219	43	2		2	COL11A2	6	33133477	Silent	SNP	G	TCGA-B0-5113-01A-01D-1421-08	5272172	33133477	137981590	18	10972											
ZFHX4	79776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	77766976	77766976	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	G	77766976	C	G	77766976	3	3	170	1	0	0	0	0	1	0	0	0	17647	536	19	4	7853	4	ZFHX4	8	77766976	Missense_Mutation	SNP	C	TCGA-B0-5113-01A-01D-1421-08		77766976	68597046	19	10973											
ANKRD26	22852	hgsc.bcm.edu;ucsc.edu	37	10	27303499	27303499	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	-	27303499	T	-	27303499	7	5	170	1	0	1	0	1	0	0	0	0	654	1725	60	0	500	0	ANKRD26	10	27303499	Frame_Shift_Del	DEL	T	TCGA-B0-5113-01A-01D-1421-08		27303499	108231248	20	10974											
MYPN	84665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	69926368	69926368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	69926368	C	A	69926368	3	1	170	1	0	0	0	0	1	0	0	0	10105	623	22	4	1952	4	MYPN	10	69926368	Missense_Mutation	SNP	C	TCGA-B0-5113-01A-01D-1421-08	42622869	69926368	65608379	21	10975											
C11orf24	53838	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	68029634	68029634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	68029634	G	A	68029634	3	1	170	1	0	0	0	0	1	0	0	0	1637	1203	42	2	524	2	C11orf24	11	68029634	Missense_Mutation	SNP	G	TCGA-B0-5113-01A-01D-1421-08		68029634	66976882	22	10976											
ODZ4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	78412936	78412936	+	Silent	SNP	G	G	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	78412936	G	A	78412936	2	1	170	1	0	0	0	0	0	0	0	1	10844	1368	48	2		2	ODZ4	11	78412936	Silent	SNP	G	TCGA-B0-5113-01A-01D-1421-08	10383302	78412936	56593580	23	10977											
SLC6A13	6540	hgsc.bcm.edu;ucsc.edu	37	12	335652	335652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	C	335652	T	C	335652	3	2	170	1	0	0	0	0	1	0	0	0	14689	1580	55	3	872	3	SLC6A13	12	335652	Missense_Mutation	SNP	T	TCGA-B0-5113-01A-01D-1421-08		335652	133516243	24	10978											
AP4E1	23431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51216161	51216161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	51216161	G	T	51216161	3	4	170	1	0	0	0	0	1	0	0	0	752	1029	36	4	394	4	AP4E1	15	51216161	Missense_Mutation	SNP	G	TCGA-B0-5113-01A-01D-1421-08		51216161	51315231	25	10979											
AP4E1	23431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51217400	51217400	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	51217400	A	T	51217400	4	4	170	1	0	0	0	0	0	1	0	0	752	363	13	5	544	5	AP4E1	15	51217400	Nonsense_Mutation	SNP	A	TCGA-B0-5113-01A-01D-1421-08	1239	51217400	51313992	26	10980											
CBLN1	869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	49313372	49313372	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	C	49313372	G	C	49313372	3	2	170	1	0	0	0	0	1	0	0	0	2706	1020	36	4	60	4	CBLN1	16	49313372	Missense_Mutation	SNP	G	TCGA-B0-5113-01A-01D-1421-08		49313372	41041381	27	10981											
P2RX1	5023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3807223	3807223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	3807223	G	A	3807223	3	1	170	1	0	0	0	0	1	0	0	0	11346	1101	38	1	708	1	P2RX1	17	3807223	Missense_Mutation	SNP	G	TCGA-B0-5113-01A-01D-1421-08		3807223	77387987	28	10982											
C17orf49	124944	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	6919830	6919830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	G	6919830	A	G	6919830	3	3	170	1	0	0	0	0	1	0	0	0	1862	159	6	3	249	3	C17orf49	17	6919830	Missense_Mutation	SNP	A	TCGA-B0-5113-01A-01D-1421-08	3112607	6919830	74275380	29	10983											
WNT3	7473	hgsc.bcm.edu	37	17	44851096	44851097	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	G	44851097	-	G	44851096	7	5	170	1	0	1	1	0	0	0	0	0	17400	768	27	0	819	0	WNT3	17	44851096	Frame_Shift_Ins	INS	-	TCGA-B0-5113-01A-01D-1421-08	37931266	44851096	36344114	30	10984											
TMEM104	54868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72832324	72832324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	72832324	G	T	72832324	3	4	170	1	0	0	0	0	1	0	0	0	16030	1087	38	4	1023	4	TMEM104	17	72832324	Missense_Mutation	SNP	G	TCGA-B0-5113-01A-01D-1421-08	27981228	72832324	8362886	31	10985											
CYTH1	9267	broad.mit.edu;ucsc.edu	37	17	76677108	76677108	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	76677108	A	A	76677108	3	1	170	1	0	0	0	0	1	0	0	0	4205	855	30	4	300	4	CYTH1	17	76677108	Missense_Mutation	SNP	C	TCGA-B0-5113-01A-01D-1421-08	3844784	76677108	4518102	32	10986											
TUBB4	0	broad.mit.edu;hgsc.bcm.edu	37	19	6501365	6501365	+	Silent	SNP	G	G	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	6501365	G	A	6501365	2	1	170	1	0	0	0	0	0	0	0	1	16770	1103	39	1		1	TUBB4	19	6501365	Silent	SNP	G	TCGA-B0-5113-01A-01D-1421-08		6501365	52627618	33	10987											
PRR12	57479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50118189	50118189	+	Silent	SNP	C	C	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	50118189	C	T	50118189	2	4	170	1	0	0	0	0	0	0	0	1	12594	854	30	2		2	PRR12	19	50118189	Silent	SNP	C	TCGA-B0-5113-01A-01D-1421-08	43616824	50118189	9010794	34	10988											
C20orf103	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	9496942	9496942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	G	9496942	A	G	9496942	3	3	170	1	0	0	0	0	1	0	0	0	2077	295	11	3	423	3	C20orf103	20	9496942	Missense_Mutation	SNP	A	TCGA-B0-5113-01A-01D-1421-08		9496942	53528578	35	10989											
FAM83C	128876	broad.mit.edu;hgsc.bcm.edu	37	20	33875579	33875579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	T	33875579	C	T	33875579	3	4	170	1	0	0	0	0	1	0	0	0	5642	478	17	2	1244	2	FAM83C	20	33875579	Missense_Mutation	SNP	C	TCGA-B0-5113-01A-01D-1421-08	24378637	33875579	29149941	36	10990											
CACNG2	10369	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	36960524	36960524	+	Silent	SNP	G	G	A	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	A	36960524	G	A	36960524	2	1	170	1	0	0	0	0	0	0	0	1	2559	1335	47	2		2	CACNG2	22	36960524	Silent	SNP	G	TCGA-B0-5113-01A-01D-1421-08		36960524	14344042	37	10991											
ELFN2	114794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	37770000	37770000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	G	37770000	C	G	37770000	3	3	170	1	0	0	0	0	1	0	0	0	5060	912	32	4	891	4	ELFN2	22	37770000	Missense_Mutation	SNP	C	TCGA-B0-5113-01A-01D-1421-08	809476	37770000	13534566	38	10992											
GABRQ	55879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151815617	151815617	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5113-01A-01D-1421-08	TCGA-B0-5113-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64b234e0-74f6-453f-b5cb-280e01fba09b	f7b96180-6131-45d9-8a88-771bc7296cde	C	151815617	G	C	151815617	3	2	170	1	0	0	0	0	1	0	0	0	6182	1116	39	4	529	4	GABRQ	23	151815617	Missense_Mutation	SNP	G	TCGA-B0-5113-01A-01D-1421-08		151815617	3454943	39	10993											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu	37	1	39788664	39788664	+	Missense_Mutation	SNP	G	G	A	rs148253091	bycluster;by1000genomes	TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	39788664	G	A	39788664	3	1	171	1	0	0	0	0	1	0	0	0	9151	1145	40	1	4361	1	MACF1	1	39788664	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08		39788664	209461957	1	10994											
C1orf104	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155290610	155290610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	155290610	T	A	155290610	3	1	171	1	0	0	0	0	1	0	0	0	1980	1522	53	5	44	5	C1orf104	1	155290610	Missense_Mutation	SNP	T	TCGA-B0-5115-01A-01D-1421-08	115501946	155290610	93960011	2	10995											
ACTN2	88	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	236891015	236891015	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	236891015	C	T	236891015	4	4	171	1	0	0	0	0	0	1	0	0	205	644	23	1	596	1	ACTN2	1	236891015	Nonsense_Mutation	SNP	C	TCGA-B0-5115-01A-01D-1421-08	81600405	236891015	12359606	3	10996											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu	37	2	170177379	170177379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	170177379	T	C	170177379	3	2	171	1	0	0	0	0	1	0	0	0	8963	1464	51	3	14184	3	LRP2	2	170177379	Missense_Mutation	SNP	T	TCGA-B0-5115-01A-01D-1421-08		170177379	73021994	4	10997											
TMEFF2	23671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	192818523	192818523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	192818523	C	G	192818523	3	3	171	1	0	0	0	0	1	0	0	0	16026	855	30	4	222	4	TMEFF2	2	192818523	Missense_Mutation	SNP	C	TCGA-B0-5115-01A-01D-1421-08	22641144	192818523	50380850	5	10998											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188227	10188227	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	10188227	A	-	10188227	7	5	171	1	0	1	0	1	0	0	0	0	17174	275	10	0	376	0	VHL	3	10188227	Frame_Shift_Del	DEL	A	TCGA-B0-5115-01A-01D-1421-08		10188227	187834203	6	10999											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52662984	52662984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	52662984	C	A	52662984	4	1	171	1	0	0	0	0	0	1	0	0	11498	835	29	4	3607	4	PBRM1	3	52662984	Nonsense_Mutation	SNP	C	TCGA-B0-5115-01A-01D-1421-08	42474757	52662984	145359446	7	11000											
OR5K2	402135	hgsc.bcm.edu	37	3	98216592	98216592	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	98216592	T	-	98216592	7	5	171	1	0	1	0	1	0	0	0	0	11174	1580	55	0	70	0	OR5K2	3	98216592	Frame_Shift_Del	DEL	T	TCGA-B0-5115-01A-01D-1421-08	45553608	98216592	99805838	8	11001											
STXBP5L	9515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121097679	121097679	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	121097679	C	T	121097679	4	4	171	1	0	0	0	0	0	1	0	0	15369	876	31	1	2447	1	STXBP5L	3	121097679	Nonsense_Mutation	SNP	C	TCGA-B0-5115-01A-01D-1421-08	22881087	121097679	76924751	9	11002											
TTC14	151613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	180322346	180322346	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	180322346	G	C	180322346	3	2	171	1	0	0	0	0	1	0	0	0	16693	1348	47	4	670	4	TTC14	3	180322346	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	59224667	180322346	17700084	10	11003	126	2									
TTC14	151613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	180322347	180322347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	180322347	G	T	180322347	3	4	171	1	0	0	0	0	1	0	0	0	16693	1261	44	4	671	4	TTC14	3	180322347	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	1	180322347	17700083	11	11004	126	2									
MXD4	10608	broad.mit.edu;hgsc.bcm.edu	37	4	2254186	2254186	+	Silent	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	2254186	G	A	2254186	2	1	171	1	0	0	0	0	0	0	0	1	10008	1310	46	2		2	MXD4	4	2254186	Silent	SNP	G	TCGA-B0-5115-01A-01D-1421-08		2254186	188900090	12	11005											
TET2	54790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	106157368	106157368	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	106157368	C	G	106157368	3	3	171	1	0	0	0	0	1	0	0	0	15782	565	20	4	2271	4	TET2	4	106157368	Missense_Mutation	SNP	C	TCGA-B0-5115-01A-01D-1421-08	103903182	106157368	84996908	13	11006											
ALPK1	80216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	113360933	113360933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	113360933	T	C	113360933	3	2	171	1	0	0	0	0	1	0	0	0	544	1696	59	3	3489	3	ALPK1	4	113360933	Missense_Mutation	SNP	T	TCGA-B0-5115-01A-01D-1421-08	7203565	113360933	77793343	14	11007											
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	5464188	5464188	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	5464188	A	T	5464188	3	4	171	1	0	0	0	0	1	0	0	0	8209	304	11	5	4791	5	KIAA0947	5	5464188	Missense_Mutation	SNP	A	TCGA-B0-5115-01A-01D-1421-08		5464188	175451072	15	11008											
CTNND2	1501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	11346669	11346676	+	Frame_Shift_Del	DEL	GGCATTCT	GGCATTCT	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	GGCATTCT	GGCATTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	11346676	GGCATTCT	-	11346669	7	5	171	1	0	1	0	1	0	0	0	0	4022	1103	39	0	2290	0	CTNND2	5	11346669	Frame_Shift_Del	DEL	GGCATTCT	TCGA-B0-5115-01A-01D-1421-08	5882481	11346669	169568591	16	11009											
ITGA2	3673	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	52363017	52363017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	52363017	G	T	52363017	3	4	171	1	0	0	0	0	1	0	0	0	7882	933	33	4	2075	4	ITGA2	5	52363017	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	41016348	52363017	128552243	17	11010											
TRIM36	55521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	114499350	114499350	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	114499350	T	A	114499350	4	1	171	1	0	0	0	0	0	1	0	0	16522	1763	61	5	2059	5	TRIM36	5	114499350	Nonsense_Mutation	SNP	T	TCGA-B0-5115-01A-01D-1421-08	62136333	114499350	66415910	18	11011											
JAKMIP2	9832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147040551	147040551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	147040551	G	A	147040551	3	1	171	1	0	0	0	0	1	0	0	0	7948	1059	37	1	1921	1	JAKMIP2	5	147040551	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	32541201	147040551	33874709	19	11012											
SPINK5	11005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147444913	147444913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	147444913	C	T	147444913	3	4	171	1	0	0	0	0	1	0	0	0	15074	797	28	2	65	2	SPINK5	5	147444913	Missense_Mutation	SNP	C	TCGA-B0-5115-01A-01D-1421-08	404362	147444913	33470347	20	11013											
MED7	9443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	156565914	156565914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	156565914	G	T	156565914	3	4	171	1	0	0	0	0	1	0	0	0	9459	1290	45	4	176	4	MED7	5	156565914	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	9121001	156565914	24349346	21	11014											
TRIM39	56658	broad.mit.edu;hgsc.bcm.edu	37	6	30308093	30308093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	30308093	C	T	30308093	3	4	171	1	0	0	0	0	1	0	0	0	16525	594	21	2	866	2	TRIM39	6	30308093	Missense_Mutation	SNP	C	TCGA-B0-5115-01A-01D-1421-08		30308093	140806974	22	11015											
MICB	4277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	31475252	31475252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	31475252	T	A	31475252	3	1	171	1	0	0	0	0	1	0	0	0	9582	1493	52	5	986	5	MICB	6	31475252	Missense_Mutation	SNP	T	TCGA-B0-5115-01A-01D-1421-08	1167159	31475252	139639815	23	11016											
FKBPL	63943	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	32097079	32097079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	32097079	A	C	32097079	3	2	171	1	0	0	0	0	1	0	0	0	5923	449	16	5	574	5	FKBPL	6	32097079	Missense_Mutation	SNP	A	TCGA-B0-5115-01A-01D-1421-08	621827	32097079	139017988	24	11017											
DAXX	1616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33286892	33286892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	33286892	G	C	33286892	3	2	171	1	0	0	0	0	1	0	0	0	4245	1174	41	4	185	4	DAXX	6	33286892	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	1189813	33286892	137828175	25	11018											
PGC	5225	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	41712242	41712242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	41712242	A	C	41712242	3	2	171	1	0	0	0	0	1	0	0	0	11792	14	1	5	1282	5	PGC	6	41712242	Missense_Mutation	SNP	A	TCGA-B0-5115-01A-01D-1421-08	8425350	41712242	129402825	26	11019											
IQCE	23288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	2645633	2645633	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	2645633	T	A	2645633	5	1	171	1	0	0	0	0	0	0	1	0	7813	1710	59	5	1945	5	IQCE	7	2645633	Splice_Site	SNP	T	TCGA-B0-5115-01A-01D-1421-08		2645633	156493030	27	11020											
RSBN1L	222194	hgsc.bcm.edu;ucsc.edu	37	7	77379172	77379172	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	77379172	A	-	77379172	7	5	171	1	0	1	0	1	0	0	0	0	13710	295	11	0	1145	0	RSBN1L	7	77379172	Frame_Shift_Del	DEL	A	TCGA-B0-5115-01A-01D-1421-08	74733539	77379172	81759491	28	11021											
ARHGEF5	7984	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	144077075	144077075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	144077075	G	T	144077075	3	4	171	1	0	0	0	0	1	0	0	0	909	1261	44	4	4774	4	ARHGEF5	7	144077075	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	66697903	144077075	15061588	29	11022											
MLL3	58508	broad.mit.edu	37	7	151834021	151834022	+	Intron	DEL	AA	-	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	151834022	-	-	151834021	6	5	171	0	1	1	0	1	0	0	0	0	9629	145	5	0		0	MLL3	7	151834021	Intron	DEL	AA	TCGA-B0-5115-01A-01D-1421-08	7756946	151834021	7304642	30	11023											
SORBS3	10174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	22423910	22423910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	22423910	G	T	22423910	3	4	171	1	0	0	0	0	1	0	0	0	14942	1087	38	4	1049	4	SORBS3	8	22423910	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08		22423910	123940112	31	11024											
C8orf37	157657	hgsc.bcm.edu;ucsc.edu	37	8	96275957	96275962	+	In_Frame_Del	DEL	AATAAG	AATAAG	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	AATAAG	AATAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	96275962	AATAAG	-	96275957	7	5	171	1	0	1	0	1	0	0	0	0	2425	358	13	0	442	0	C8orf37	8	96275957	In_Frame_Del	DEL	AATAAG	TCGA-B0-5115-01A-01D-1421-08	73852047	96275957	50088065	32	11025											
GPR172A	0	hgsc.bcm.edu	37	8	145584534	145584535	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	145584535	-	G	145584534	7	5	171	1	0	1	1	0	0	0	0	0	6676	755	27	0	1211	0	GPR172A	8	145584534	Frame_Shift_Ins	INS	-	TCGA-B0-5115-01A-01D-1421-08	49308577	145584534	779488	33	11026											
UBAP1	51271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	34241773	34241773	+	Silent	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	34241773	C	G	34241773	2	3	171	1	0	0	0	0	0	0	0	1	16848	581	21	4		4	UBAP1	9	34241773	Silent	SNP	C	TCGA-B0-5115-01A-01D-1421-08		34241773	106971658	34	11027											
GBA2	57704	hgsc.bcm.edu;ucsc.edu	37	9	35738845	35738845	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	35738845	C	-	35738845	7	5	171	1	0	1	0	1	0	0	0	0	6274	856	30	0	956	0	GBA2	9	35738845	Frame_Shift_Del	DEL	C	TCGA-B0-5115-01A-01D-1421-08	1497072	35738845	105474586	35	11028											
SEC16A	9919	hgsc.bcm.edu	37	9	139370955	139370963	+	In_Frame_Del	DEL	AGCTCCTGA	AGCTCCTGA	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	AGCTCCTGA	AGCTCCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	139370963	AGCTCCTGA	-	139370955	7	5	171	1	0	1	0	1	0	0	0	0	13999	291	11	0	6080	0	SEC16A	9	139370955	In_Frame_Del	DEL	AGCTCCTGA	TCGA-B0-5115-01A-01D-1421-08	103632110	139370955	1842476	36	11029											
ERLIN1	10613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	101923759	101923759	+	Splice_Site	SNP	A	A	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	101923759	A	G	101923759	5	3	171	1	0	0	0	0	0	0	1	0	5234	405	14	3	405	3	ERLIN1	10	101923759	Splice_Site	SNP	A	TCGA-B0-5115-01A-01D-1421-08		101923759	33610988	37	11030											
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117374716	117374716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	117374716	A	T	117374716	3	4	171	1	0	0	0	0	1	0	0	0	4771	391	14	5	4050	5	DSCAML1	11	117374716	Missense_Mutation	SNP	A	TCGA-B0-5115-01A-01D-1421-08		117374716	17631800	38	11031	127	2									
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117374717	117374717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	117374717	C	G	117374717	3	3	171	1	0	0	0	0	1	0	0	0	4771	564	20	4	4051	4	DSCAML1	11	117374717	Missense_Mutation	SNP	C	TCGA-B0-5115-01A-01D-1421-08	1	117374717	17631799	39	11032	127	2									
PRDM10	56980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	129817095	129817095	+	Silent	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	129817095	C	T	129817095	2	4	171	1	0	0	0	0	0	0	0	1	12461	639	23	1		1	PRDM10	11	129817095	Silent	SNP	C	TCGA-B0-5115-01A-01D-1421-08	12442378	129817095	5189421	40	11033											
VWF	7450	broad.mit.edu;hgsc.bcm.edu	37	12	6127588	6127588	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	6127588	G	C	6127588	3	2	171	1	0	0	0	0	1	0	0	0	17258	962	34	4	3545	4	VWF	12	6127588	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08		6127588	127724307	41	11034											
CD163	9332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7636081	7636081	+	Silent	SNP	C	C	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	7636081	C	G	7636081	2	3	171	1	0	0	0	0	0	0	0	1	2969	871	31	4		4	CD163	12	7636081	Silent	SNP	C	TCGA-B0-5115-01A-01D-1421-08	1508493	7636081	126215814	42	11035											
WBP11	51729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14943423	14943423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	14943423	G	A	14943423	3	1	171	1	0	0	0	0	1	0	0	0	17270	1203	42	2	661	2	WBP11	12	14943423	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	7307342	14943423	118908472	43	11036											
TSPAN19	144448	broad.mit.edu	37	12	85423550	85423550	+	Frame_Shift_Del	DEL	A	-	-	rs59822389		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	85423550	-	-	85423550	7	5	171	1	0	1	0	1	0	0	0	0	16655	217	8	0	688	0	TSPAN19	12	85423550	Frame_Shift_Del	DEL	A	TCGA-B0-5115-01A-01D-1421-08	70480127	85423550	48428345	44	11037											
SART3	9733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	108920274	108920274	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	108920274	G	A	108920274	4	1	171	1	0	0	0	0	0	1	0	0	13860	1386	48	2	935	2	SART3	12	108920274	Nonsense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	23496724	108920274	24931621	45	11038											
FZD10	11211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	130649146	130649146	+	Silent	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	130649146	C	T	130649146	2	4	171	1	0	0	0	0	0	0	0	1	6136	767	27	1		1	FZD10	12	130649146	Silent	SNP	C	TCGA-B0-5115-01A-01D-1421-08	21728872	130649146	3202749	46	11039											
PKD1	5310	broad.mit.edu	37	16	2161786	2161786	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	2161786	T	T	2161786	3	4	171	1	0	0	0	0	1	0	0	0	11970	304	11	5	9657	5	PKD1	16	2161786	Missense_Mutation	SNP	A	TCGA-B0-5115-01A-01D-1421-08		2161786	88192967	47	11040											
ZC3H7A	29066	hgsc.bcm.edu;ucsc.edu	37	16	11846601	11846602	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	-	11846602	TC	-	11846601	7	5	171	1	0	1	0	1	0	0	0	0	17584	1792	62	0	273	0	ZC3H7A	16	11846601	Frame_Shift_Del	DEL	TC	TCGA-B0-5115-01A-01D-1421-08	9684815	11846601	78508152	48	11041											
LRRC36	55282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67404969	67404969	+	Silent	SNP	C	C	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	67404969	C	T	67404969	2	4	171	1	0	0	0	0	0	0	0	1	8997	680	24	2		2	LRRC36	16	67404969	Silent	SNP	C	TCGA-B0-5115-01A-01D-1421-08	55558368	67404969	22949784	49	11042											
C16orf48	0	broad.mit.edu;hgsc.bcm.edu	37	16	67697841	67697841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	67697841	T	G	67697841	3	3	171	1	0	0	0	0	1	0	0	0	1818	1623	56	5	478	5	C16orf48	16	67697841	Missense_Mutation	SNP	T	TCGA-B0-5115-01A-01D-1421-08	292872	67697841	22656912	50	11043											
GLG1	2734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	74530491	74530491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	74530491	T	C	74530491	3	2	171	1	0	0	0	0	1	0	0	0	6443	1792	62	3	2881	3	GLG1	16	74530491	Missense_Mutation	SNP	T	TCGA-B0-5115-01A-01D-1421-08	6832650	74530491	15824262	51	11044											
FAM64A	54478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	6348680	6348680	+	Missense_Mutation	SNP	G	G	A	rs151147808		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	6348680	G	A	6348680	3	1	171	1	0	0	0	0	1	0	0	0	5605	1203	42	2	252	2	FAM64A	17	6348680	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08		6348680	74846530	52	11045											
SMAD2	4087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	45368211	45368211	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	45368211	G	T	45368211	4	4	171	1	0	0	0	0	0	1	0	0	14771	1294	45	4	16	4	SMAD2	18	45368211	Nonsense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08		45368211	32709037	53	11046											
CCDC68	80323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	52575020	52575020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	52575020	G	A	52575020	3	1	171	1	0	0	0	0	1	0	0	0	2842	1377	48	2	68	2	CCDC68	18	52575020	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	7206809	52575020	25502228	54	11047											
HMHA1	23526	broad.mit.edu;ucsc.edu	37	19	1074667	1074667	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	A	1074667	A	A	1074667	3	1	171	1	0	0	0	0	1	0	0	0	7247	1725	60	5	1082	5	HMHA1	19	1074667	Missense_Mutation	SNP	T	TCGA-B0-5115-01A-01D-1421-08		1074667	58054316	55	11048											
ZNF20	7568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12243969	12243969	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	12243969	A	T	12243969	4	4	171	1	0	0	0	0	0	1	0	0	17773	157	6	5	570	5	ZNF20	19	12243969	Nonsense_Mutation	SNP	A	TCGA-B0-5115-01A-01D-1421-08	11169302	12243969	46885014	56	11049											
SIPA1L3	23094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38609984	38609984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	38609984	G	C	38609984	3	2	171	1	0	0	0	0	1	0	0	0	14344	1203	42	4	2356	4	SIPA1L3	19	38609984	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	26366015	38609984	20518999	57	11050											
ZNF432	9668	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52538204	52538204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	52538204	G	T	52538204	3	4	171	1	0	0	0	0	1	0	0	0	17918	1174	41	4	1234	4	ZNF432	19	52538204	Missense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08	13928220	52538204	6590779	58	11051											
ZNF320	162967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53384724	53384724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	C	53384724	A	C	53384724	3	2	171	1	0	0	0	0	1	0	0	0	17851	217	8	5	878	5	ZNF320	19	53384724	Missense_Mutation	SNP	A	TCGA-B0-5115-01A-01D-1421-08	846520	53384724	5744259	59	11052											
PTPN1	5770	broad.mit.edu;hgsc.bcm.edu	37	20	49196426	49196426	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	T	49196426	G	T	49196426	4	4	171	1	0	0	0	0	0	1	0	0	12790	1001	35	4	1081	4	PTPN1	20	49196426	Nonsense_Mutation	SNP	G	TCGA-B0-5115-01A-01D-1421-08		49196426	13829094	60	11053											
PEX26	55670	broad.mit.edu;ucsc.edu	37	22	18566233	18566233	+	Silent	SNP	T	G	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	18566233	G	G	18566233	2	3	171	1	0	0	0	0	0	0	0	1	11753	1567	55	5		5	PEX26	22	18566233	Silent	SNP	T	TCGA-B0-5115-01A-01D-1421-08		18566233	32738333	61	11054											
GPRASP1	9737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101911040	101911041	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5115-01A-01D-1421-08	TCGA-B0-5115-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f122b61c-d537-4456-84e8-54e541eec531	52d7031e-269c-432a-bbbb-ef02410e2412	G	101911041	-	G	101911040	7	5	171	1	0	1	1	0	0	0	0	0	6729	1461	51	0	2201	0	GPRASP1	23	101911040	Frame_Shift_Ins	INS	-	TCGA-B0-5115-01A-01D-1421-08		101911040	53359520	62	11055											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39823255	39823255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	39823255	A	G	39823255	3	3	172	1	0	0	0	0	1	0	0	0	9151	304	11	3	11756	3	MACF1	1	39823255	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08		39823255	209427366	1	11056											
ANKRD13C	81573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	70781173	70781173	+	Silent	SNP	G	G	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	70781173	G	C	70781173	2	2	172	1	0	0	0	0	0	0	0	1	643	1219	43	4		4	ANKRD13C	1	70781173	Silent	SNP	G	TCGA-B0-5116-01A-02D-1421-08	30957918	70781173	178469448	2	11057											
TSEN15	116461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	184023905	184023905	+	Silent	SNP	C	C	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	184023905	C	A	184023905	2	1	172	1	0	0	0	0	0	0	0	1	16623	842	30	4		4	TSEN15	1	184023905	Silent	SNP	C	TCGA-B0-5116-01A-02D-1421-08	113242732	184023905	65226716	3	11058											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201010703	201010703	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	201010703	C	G	201010703	3	3	172	1	0	0	0	0	1	0	0	0	2549	681	24	4	574	4	CACNA1S	1	201010703	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08	16986798	201010703	48239918	4	11059											
KIAA1383	54627	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	232942950	232942950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	232942950	G	C	232942950	3	2	172	1	0	0	0	0	1	0	0	0	8235	962	34	4	2183	4	KIAA1383	1	232942950	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	31932247	232942950	16307671	5	11060											
CLIP4	79745	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	29383260	29383260	+	Silent	SNP	C	C	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	29383260	C	T	29383260	2	4	172	1	0	0	0	0	0	0	0	1	3537	871	31	1		1	CLIP4	2	29383260	Silent	SNP	C	TCGA-B0-5116-01A-02D-1421-08		29383260	213816113	6	11061											
TACR1	6869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	75278449	75278449	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	75278449	G	T	75278449	4	4	172	1	0	0	0	0	0	1	0	0	15517	1256	44	4	374	4	TACR1	2	75278449	Nonsense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	45895189	75278449	167920924	7	11062	128	2									
TACR1	6869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	75278450	75278450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	75278450	T	A	75278450	3	1	172	1	0	0	0	0	1	0	0	0	15517	1638	57	5	375	5	TACR1	2	75278450	Missense_Mutation	SNP	T	TCGA-B0-5116-01A-02D-1421-08	1	75278450	167920923	8	11063	128	2									
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179587658	179587658	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	179587658	G	C	179587658	3	2	172	1	0	0	0	0	1	0	0	0	16747	1000	35	4	82709	4	TTN	2	179587658	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	104309208	179587658	63611715	9	11064											
CERKL	375298	hgsc.bcm.edu	37	2	182430234	182430234	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	-	182430234	C	-	182430234	7	5	172	1	0	1	0	1	0	0	0	0	3270	726	26	0	1035	0	CERKL	2	182430234	Frame_Shift_Del	DEL	C	TCGA-B0-5116-01A-02D-1421-08	2842576	182430234	60769139	10	11065											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52643368	52643389	+	Frame_Shift_Del	DEL	TGCTCTTGAAATAAATCAAGCC	TGCTCTTGAAATAAATCAAGCC	-	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	TGCTCTTGAAATAAATCAAGCC	TGCTCTTGAAATAAATCAAGCC	TGCTCTTGAAATAAATCAAGCC	-	TGCTCTTGAAATAAATCAAGCC	TGCTCTTGAAATAAATCAAGCC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	-	52643389	TGCTCTTGAAATAAATCAAGCC	-	52643368	7	5	172	1	0	1	0	1	0	0	0	0	11498	1464	51	0	2432	0	PBRM1	3	52643368	Frame_Shift_Del	DEL	TGCTCTTGAAATAAATCAAGCC	TCGA-B0-5116-01A-02D-1421-08		52643368	145379062	11	11066											
ALDH1L1	10840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	125828895	125828895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	125828895	C	T	125828895	3	4	172	1	0	0	0	0	1	0	0	0	494	652	23	1	485	1	ALDH1L1	3	125828895	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08	73185527	125828895	72193535	12	11067											
NEK11	79858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130992364	130992364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	130992364	G	A	130992364	3	1	172	1	0	0	0	0	1	0	0	0	10330	1174	41	2	1740	2	NEK11	3	130992364	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	5163469	130992364	67030066	13	11068											
REST	5978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	57798103	57798103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	57798103	A	G	57798103	3	3	172	1	0	0	0	0	1	0	0	0	13247	420	15	3	3089	3	REST	4	57798103	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08		57798103	133356173	14	11069											
PDLIM5	10611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	95583632	95583632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	95583632	G	A	95583632	3	1	172	1	0	0	0	0	1	0	0	0	11690	1290	45	2	1847	2	PDLIM5	4	95583632	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	37785529	95583632	95570644	15	11070											
INPP4B	8821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	143081662	143081662	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	-	143081662	A	-	143081662	7	5	172	1	0	1	0	1	0	0	0	0	7760	372	13	0	1402	0	INPP4B	4	143081662	Frame_Shift_Del	DEL	A	TCGA-B0-5116-01A-02D-1421-08	47498030	143081662	48072614	16	11071											
MATR3	9782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	138643267	138643267	+	Silent	SNP	T	T	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	138643267	T	C	138643267	2	2	172	1	0	0	0	0	0	0	0	1	9344	1838	64	3		3	MATR3	5	138643267	Silent	SNP	T	TCGA-B0-5116-01A-02D-1421-08		138643267	42271993	17	11072											
PTPRK	5796	broad.mit.edu;hgsc.bcm.edu	37	6	128318044	128318044	+	Splice_Site	SNP	A	A	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	128318044	A	G	128318044	5	3	172	1	0	0	0	0	0	0	1	0	12818	405	14	3	1631	3	PTPRK	6	128318044	Splice_Site	SNP	A	TCGA-B0-5116-01A-02D-1421-08		128318044	42797023	18	11073	129	2									
PTPRK	5796	broad.mit.edu	37	6	128318045	128318045	+	Splice_Site	SNP	C	T	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	128318045	T	T	128318045	5	4	172	1	0	0	0	0	0	0	1	0	12818	492	17	2	1632	2	PTPRK	6	128318045	Splice_Site	SNP	C	TCGA-B0-5116-01A-02D-1421-08	1	128318045	42797022	19	11074	129	2									
ALDH8A1	64577	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	135253987	135253987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	135253987	G	C	135253987	3	2	172	1	0	0	0	0	1	0	0	0	505	1000	35	4	699	4	ALDH8A1	6	135253987	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	6935942	135253987	35861080	20	11075											
KIAA0415	0	broad.mit.edu;ucsc.edu	37	7	4824670	4824670	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	4824670	C	C	4824670	3	2	172	1	0	0	0	0	1	0	0	0	8182	72	3	5	948	5	KIAA0415	7	4824670	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08		4824670	154313993	21	11076											
EGFR	1956	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	55269438	55269438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	55269438	G	A	55269438	3	1	172	1	0	0	0	0	1	0	0	0	4969	971	34	2	3491	2	EGFR	7	55269438	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	50444768	55269438	103869225	22	11077											
PPP1R9A	55607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94881092	94881092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	94881092	A	T	94881092	3	4	172	1	0	0	0	0	1	0	0	0	12388	11	1	5	2453	5	PPP1R9A	7	94881092	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08	39611654	94881092	64257571	23	11078											
PIK3CG	5294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	106508218	106508218	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	106508218	A	T	106508218	3	4	172	1	0	0	0	0	1	0	0	0	11923	72	3	5	214	5	PIK3CG	7	106508218	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08	11627126	106508218	52630445	24	11079											
C7orf58	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	120773891	120773891	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	120773891	A	C	120773891	3	2	172	1	0	0	0	0	1	0	0	0	2407	246	9	5	1638	5	C7orf58	7	120773891	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08	14265673	120773891	38364772	25	11080											
GTF2E2	2961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	30492585	30492585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	30492585	C	G	30492585	3	3	172	1	0	0	0	0	1	0	0	0	6864	564	20	4	677	4	GTF2E2	8	30492585	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08		30492585	115871437	26	11081											
FKBP15	23307	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	115932898	115932898	+	Silent	SNP	G	G	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	115932898	G	T	115932898	2	4	172	1	0	0	0	0	0	0	0	1	5912	1280	45	4		4	FKBP15	9	115932898	Silent	SNP	G	TCGA-B0-5116-01A-02D-1421-08		115932898	25280533	27	11082											
PDE6C	5146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	95415548	95415548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	95415548	G	A	95415548	3	1	172	1	0	0	0	0	1	0	0	0	11654	1116	39	1	2029	1	PDE6C	10	95415548	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08		95415548	40119199	28	11083											
NUP98	4928	broad.mit.edu;hgsc.bcm.edu	37	11	3797144	3797144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	3797144	C	G	3797144	3	3	172	1	0	0	0	0	1	0	0	0	10780	797	28	4	5127	4	NUP98	11	3797144	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08		3797144	131209372	29	11084											
OR51I2	390064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5475160	5475160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	5475160	G	A	5475160	3	1	172	1	0	0	0	0	1	0	0	0	11108	1319	46	2	444	2	OR51I2	11	5475160	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	1678016	5475160	129531356	30	11085											
C11orf16	56673	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	8948498	8948498	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	8948498	T	A	8948498	3	1	172	1	0	0	0	0	1	0	0	0	1633	1435	50	5	867	5	C11orf16	11	8948498	Missense_Mutation	SNP	T	TCGA-B0-5116-01A-02D-1421-08	3473338	8948498	126058018	31	11086											
SLC22A6	9356	hgsc.bcm.edu	37	11	62744692	62744693	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	62744693	-	G	62744692	7	5	172	1	0	1	1	0	0	0	0	0	14471	1580	55	0	170	0	SLC22A6	11	62744692	Frame_Shift_Ins	INS	-	TCGA-B0-5116-01A-02D-1421-08	53796194	62744692	72261824	32	11087											
KRTAP5-9	3846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	71260168	71260168	+	Silent	SNP	C	C	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	71260168	C	A	71260168	2	1	172	1	0	0	0	0	0	0	0	1	8575	610	22	4		4	KRTAP5-9	11	71260168	Silent	SNP	C	TCGA-B0-5116-01A-02D-1421-08	8515476	71260168	63746348	33	11088											
MCAM	4162	hgsc.bcm.edu;ucsc.edu	37	11	119182813	119182813	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	-	119182813	G	-	119182813	7	5	172	1	0	1	0	1	0	0	0	0	9375	987	35	0	880	0	MCAM	11	119182813	Frame_Shift_Del	DEL	G	TCGA-B0-5116-01A-02D-1421-08	47922645	119182813	15823703	34	11089											
C12orf57	113246	broad.mit.edu	37	12	7054995	7054995	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	7054995	A	A	7054995	3	1	172	1	0	0	0	0	1	0	0	0	1703	738	26	4	301	4	C12orf57	12	7054995	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08		7054995	126796900	35	11090											
EPS8	2059	hgsc.bcm.edu	37	12	15784537	15784539	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	-	15784539	GGA	-	15784537	7	5	172	1	0	1	0	1	0	0	0	0	5196	1348	47	0	601	0	EPS8	12	15784537	In_Frame_Del	DEL	GGA	TCGA-B0-5116-01A-02D-1421-08	8729542	15784537	118067358	36	11091											
ALG10	84920	hgsc.bcm.edu	37	12	34179315	34179315	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	34179315	C	A	34179315	4	1	172	1	0	0	0	0	0	1	0	0	511	838	29	4	897	4	ALG10	12	34179315	Nonsense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08	18394778	34179315	99672580	37	11092											
PPFIA2	8499	broad.mit.edu;hgsc.bcm.edu	37	12	81675111	81675111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	81675111	A	G	81675111	3	3	172	1	0	0	0	0	1	0	0	0	12317	391	14	3	660	3	PPFIA2	12	81675111	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08	47495796	81675111	52176784	38	11093											
GLT8D2	83468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104390596	104390596	+	Silent	SNP	A	A	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	104390596	A	G	104390596	2	3	172	1	0	0	0	0	0	0	0	1	6477	69	3	3		3	GLT8D2	12	104390596	Silent	SNP	A	TCGA-B0-5116-01A-02D-1421-08	22715485	104390596	29461299	39	11094											
ALKBH2	121642	broad.mit.edu	37	12	109530325	109530325	+	Silent	SNP	T	A	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	109530325	A	A	109530325	2	1	172	1	0	0	0	0	0	0	0	1	527	1509	53	5		5	ALKBH2	12	109530325	Silent	SNP	T	TCGA-B0-5116-01A-02D-1421-08	5139729	109530325	24321570	40	11095											
ALKBH2	121642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	109530381	109530381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	109530381	C	T	109530381	3	4	172	1	0	0	0	0	1	0	0	0	527	565	20	2	586	2	ALKBH2	12	109530381	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08	56	109530381	24321514	41	11096											
OR4K2	390431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	20344686	20344686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	20344686	C	G	20344686	3	3	172	1	0	0	0	0	1	0	0	0	11079	478	17	4	262	4	OR4K2	14	20344686	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08		20344686	87004854	42	11097											
OR4K1	79544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	20403917	20403917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	20403917	T	C	20403917	3	2	172	1	0	0	0	0	1	0	0	0	11074	1783	62	3	94	3	OR4K1	14	20403917	Missense_Mutation	SNP	T	TCGA-B0-5116-01A-02D-1421-08	59231	20403917	86945623	43	11098											
KCNH5	27133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	63447836	63447836	+	Silent	SNP	A	A	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	63447836	A	T	63447836	2	4	172	1	0	0	0	0	0	0	0	1	8042	233	9	5		5	KCNH5	14	63447836	Silent	SNP	A	TCGA-B0-5116-01A-02D-1421-08	43043919	63447836	43901704	44	11099											
DCAF5	8816	broad.mit.edu;hgsc.bcm.edu	37	14	69589045	69589045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	69589045	T	C	69589045	3	2	172	1	0	0	0	0	1	0	0	0	4275	1464	51	3	2613	3	DCAF5	14	69589045	Missense_Mutation	SNP	T	TCGA-B0-5116-01A-02D-1421-08	6141209	69589045	37760495	45	11100											
SPTBN5	51332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42147094	42147094	+	Silent	SNP	C	C	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	42147094	C	T	42147094	2	4	172	1	0	0	0	0	0	0	0	1	15134	593	21	2		2	SPTBN5	15	42147094	Silent	SNP	C	TCGA-B0-5116-01A-02D-1421-08		42147094	60384298	46	11101											
USP50	373509	broad.mit.edu;hgsc.bcm.edu	37	15	50833303	50833303	+	Silent	SNP	G	G	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	50833303	G	A	50833303	2	1	172	1	0	0	0	0	0	0	0	1	17094	1136	40	1		1	USP50	15	50833303	Silent	SNP	G	TCGA-B0-5116-01A-02D-1421-08	8686209	50833303	51698089	47	11102											
CORO2B	10391	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	69006276	69006276	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	-	69006276	A	-	69006276	7	5	172	1	0	1	0	1	0	0	0	0	3759	131	5	0	683	0	CORO2B	15	69006276	Frame_Shift_Del	DEL	A	TCGA-B0-5116-01A-02D-1421-08	18172973	69006276	33525116	48	11103											
RBBP6	5930	hgsc.bcm.edu;ucsc.edu	37	16	24551961	24551962	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	24551962	-	T	24551961	7	5	172	1	0	1	1	0	0	0	0	0	13116	217	8	0	16	0	RBBP6	16	24551961	Frame_Shift_Ins	INS	-	TCGA-B0-5116-01A-02D-1421-08		24551961	65802792	49	11104											
SLC12A3	6559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	56904064	56904064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	56904064	G	T	56904064	3	4	172	1	0	0	0	0	1	0	0	0	14397	1116	39	4	676	4	SLC12A3	16	56904064	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	32352103	56904064	33450689	50	11105											
CDRT1	374286	broad.mit.edu;hgsc.bcm.edu	37	17	15516051	15516051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	15516051	C	T	15516051	3	4	172	1	0	0	0	0	1	0	0	0	3176	710	25	2	1204	2	CDRT1	17	15516051	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08		15516051	65679159	51	11106											
C17orf47	284083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56620725	56620725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	56620725	G	A	56620725	3	1	172	1	0	0	0	0	1	0	0	0	1860	1029	36	2	897	2	C17orf47	17	56620725	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	41104674	56620725	24574485	52	11107											
MUC16	94025	broad.mit.edu;ucsc.edu	37	19	9077024	9077024	+	Silent	SNP	G	A	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	9077024	A	A	9077024	2	1	172	1	0	0	0	0	0	0	0	1	9980	1277	45	2		2	MUC16	19	9077024	Silent	SNP	G	TCGA-B0-5116-01A-02D-1421-08		9077024	50051959	53	11108											
ZNF561	93134	broad.mit.edu;hgsc.bcm.edu	37	19	9720930	9720930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	9720930	T	A	9720930	3	1	172	1	0	0	0	0	1	0	0	0	18004	1780	62	5	57	5	ZNF561	19	9720930	Missense_Mutation	SNP	T	TCGA-B0-5116-01A-02D-1421-08	643906	9720930	49408053	54	11109											
CHST8	64377	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	34263556	34263556	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	34263556	T	A	34263556	3	1	172	1	0	0	0	0	1	0	0	0	3412	1580	55	5	873	5	CHST8	19	34263556	Missense_Mutation	SNP	T	TCGA-B0-5116-01A-02D-1421-08	24542626	34263556	24865427	55	11110											
ATP4A	495	broad.mit.edu;ucsc.edu	37	19	36054147	36054147	+	Silent	SNP	C	T	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	36054147	T	T	36054147	2	4	172	1	0	0	0	0	0	0	0	1	1145	639	23	1		1	ATP4A	19	36054147	Silent	SNP	C	TCGA-B0-5116-01A-02D-1421-08	1790591	36054147	23074836	56	11111											
RELB	5971	broad.mit.edu;hgsc.bcm.edu	37	19	45515352	45515352	+	Silent	SNP	G	G	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	45515352	G	T	45515352	2	4	172	1	0	0	0	0	0	0	0	1	13230	1232	43	4		4	RELB	19	45515352	Silent	SNP	G	TCGA-B0-5116-01A-02D-1421-08	9461205	45515352	13613631	57	11112											
MRPS26	64949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3028493	3028493	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	3028493	G	C	3028493	3	2	172	1	0	0	0	0	1	0	0	0	9844	1000	35	4	610	4	MRPS26	20	3028493	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08		3028493	59997027	58	11113											
ACSS2	55902	broad.mit.edu	37	20	33508376	33508376	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	G	33508376	G	G	33508376	3	3	172	1	0	0	0	0	1	0	0	0	189	449	16	3	1084	3	ACSS2	20	33508376	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08	30479883	33508376	29517144	59	11114											
C21orf45	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	33642768	33642768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	33642768	A	C	33642768	3	2	172	1	0	0	0	0	1	0	0	0	2128	330	12	5	239	5	C21orf45	21	33642768	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08		33642768	14487127	60	11115											
C21orf29	0	broad.mit.edu	37	21	45950936	45950936	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	A	45950936	A	A	45950936	3	1	172	1	0	0	0	0	1	0	0	0	2126	739	26	4	1422	4	C21orf29	21	45950936	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02D-1421-08	12308168	45950936	2178959	61	11116											
SLC25A14	9016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129499647	129499647	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	129499647	A	C	129499647	3	2	172	1	0	0	0	0	1	0	0	0	14489	359	13	5	882	5	SLC25A14	23	129499647	Missense_Mutation	SNP	A	TCGA-B0-5116-01A-02D-1421-08		129499647	25770913	62	11117											
CCDC160	347475	broad.mit.edu;hgsc.bcm.edu	37	X	133379666	133379666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	T	133379666	G	T	133379666	3	4	172	1	0	0	0	0	1	0	0	0	2794	1029	36	4	838	4	CCDC160	23	133379666	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	3880019	133379666	21890894	63	11118											
MAGEC1	9947	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	140995587	140995587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5116-01A-02D-1421-08	TCGA-B0-5116-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb879135-abb3-4415-9de5-6a508b61657d	083104b4-ab47-457f-8009-1c065ce02101	C	140995587	G	C	140995587	3	2	172	1	0	0	0	0	1	0	0	0	9187	933	33	4	2403	4	MAGEC1	23	140995587	Missense_Mutation	SNP	G	TCGA-B0-5116-01A-02D-1421-08	7615921	140995587	14274973	64	11119											
VHL	7428	hgsc.bcm.edu	37	3	10183815	10183815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5116-01A-02W-1475-10	TCGA-B0-5116-11A-01W-1475-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	e393f502-8aa5-40fb-8280-a89e36fa87aa	5a6e989a-cfad-46fb-beee-fdfa7b1430bd	A	10183815	C	A	10183815	3	1	173	1	0	0	0	0	1	0	0	0	17174	652	23	4	286	4	VHL	3	10183815	Missense_Mutation	SNP	C	TCGA-B0-5116-01A-02W-1475-10		10183815	187838615	1	11120											
KCNK3	3777	broad.mit.edu	37	2	26950601	26950601	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	26950601	G	A	26950601	3	1	174	1	0	0	0	0	1	0	0	0	8074	1203	42	2	356	2	KCNK3	2	26950601	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08		26950601	216248772	1	11121											
ACTR8	93973	broad.mit.edu	37	3	53911743	53911743	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	C	53911743	A	C	53911743	3	2	174	1	0	0	0	0	1	0	0	0	217	10	1	5	1473	5	ACTR8	3	53911743	Missense_Mutation	SNP	A	TCGA-B0-5117-01A-01D-1421-08		53911743	144110687	2	11122											
WDR52	55779	broad.mit.edu	37	3	113115480	113115480	+	Missense_Mutation	SNP	G	G	A	rs145391746		TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	113115480	G	A	113115480	3	1	174	1	0	0	0	0	1	0	0	0	17316	1087	38	1	4003	1	WDR52	3	113115480	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08	59203737	113115480	84906950	3	11123											
OPA1	4976	broad.mit.edu	37	3	193384116	193384116	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	193384116	G	A	193384116	3	1	174	1	0	0	0	0	1	0	0	0	10878	1145	40	1	2920	1	OPA1	3	193384116	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08	80268636	193384116	4638314	4	11124											
MUC4	4585	broad.mit.edu	37	3	195507717	195507717	+	Silent	SNP	G	G	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	195507717	G	T	195507717	2	4	174	1	0	0	0	0	0	0	0	1	9985	1335	47	4		4	MUC4	3	195507717	Silent	SNP	G	TCGA-B0-5117-01A-01D-1421-08	2123601	195507717	2514713	5	11125											
TADA2B	93624	broad.mit.edu	37	4	7056535	7056535	+	Silent	SNP	C	C	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	7056535	C	T	7056535	2	4	174	1	0	0	0	0	0	0	0	1	15523	883	31	1		1	TADA2B	4	7056535	Silent	SNP	C	TCGA-B0-5117-01A-01D-1421-08		7056535	184097741	6	11126											
ANXA10	11199	broad.mit.edu	37	4	169108555	169108555	+	Silent	SNP	C	C	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	169108555	C	A	169108555	2	1	174	1	0	0	0	0	0	0	0	1	715	581	21	4		4	ANXA10	4	169108555	Silent	SNP	C	TCGA-B0-5117-01A-01D-1421-08	162052020	169108555	22045721	7	11127											
MTRR	4552	broad.mit.edu	37	5	7895897	7895897	+	Silent	SNP	C	C	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	7895897	C	A	7895897	2	1	174	1	0	0	0	0	0	0	0	1	9968	668	24	4		4	MTRR	5	7895897	Silent	SNP	C	TCGA-B0-5117-01A-01D-1421-08		7895897	173019363	8	11128											
VCAN	1462	broad.mit.edu	37	5	82834109	82834109	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	G	82834109	A	G	82834109	3	3	174	1	0	0	0	0	1	0	0	0	17150	391	14	3	5313	3	VCAN	5	82834109	Missense_Mutation	SNP	A	TCGA-B0-5117-01A-01D-1421-08	74938212	82834109	98081151	9	11129											
PKHD1	5314	broad.mit.edu	37	6	51929825	51929825	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	51929825	C	T	51929825	3	4	174	1	0	0	0	0	1	0	0	0	11978	536	19	1	11579	1	PKHD1	6	51929825	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08		51929825	119185242	10	11130											
HEATR2	54919	broad.mit.edu	37	7	796571	796571	+	Silent	SNP	G	G	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	796571	G	T	796571	2	4	174	1	0	0	0	0	0	0	0	1	7035	1074	38	4		4	HEATR2	7	796571	Silent	SNP	G	TCGA-B0-5117-01A-01D-1421-08		796571	158342092	11	11131											
TECPR1	25851	broad.mit.edu	37	7	97873932	97873932	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	97873932	C	T	97873932	3	4	174	1	0	0	0	0	1	0	0	0	15755	652	23	1	3103	1	TECPR1	7	97873932	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08	97077361	97873932	61264731	12	11132											
MUC17	140453	broad.mit.edu	37	7	100682390	100682390	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	100682390	C	A	100682390	3	1	174	1	0	0	0	0	1	0	0	0	9981	739	26	4	7703	4	MUC17	7	100682390	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08	2808458	100682390	58456273	13	11133											
ANK1	286	broad.mit.edu	37	8	41529890	41529890	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	41529890	G	A	41529890	3	1	174	1	0	0	0	0	1	0	0	0	620	1145	40	1	913	1	ANK1	8	41529890	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08		41529890	104834132	14	11134											
CHD7	55636	broad.mit.edu	37	8	61767019	61767019	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	61767019	C	A	61767019	3	1	174	1	0	0	0	0	1	0	0	0	3332	535	19	4	6995	4	CHD7	8	61767019	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08	20237129	61767019	84597003	15	11135											
OR13C8	138802	broad.mit.edu	37	9	107331658	107331658	+	Silent	SNP	C	C	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	107331658	C	T	107331658	2	4	174	1	0	0	0	0	0	0	0	1	10945	535	19	1		1	OR13C8	9	107331658	Silent	SNP	C	TCGA-B0-5117-01A-01D-1421-08		107331658	33881773	16	11136											
PKN3	29941	broad.mit.edu	37	9	131481983	131481983	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	131481983	G	A	131481983	3	1	174	1	0	0	0	0	1	0	0	0	11988	1116	39	1	2218	1	PKN3	9	131481983	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08	24150325	131481983	9731448	17	11137											
SARDH	1757	broad.mit.edu	37	9	136573487	136573487	+	Silent	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	136573487	G	A	136573487	2	1	174	1	0	0	0	0	0	0	0	1	13854	1140	40	1		1	SARDH	9	136573487	Silent	SNP	G	TCGA-B0-5117-01A-01D-1421-08	5091504	136573487	4639944	18	11138											
MYOF	26509	broad.mit.edu	37	10	95216640	95216640	+	Splice_Site	SNP	T	T	C			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	C	95216640	T	C	95216640	5	2	174	1	0	0	0	0	0	0	1	0	10096	1565	54	3	6254	3	MYOF	10	95216640	Splice_Site	SNP	T	TCGA-B0-5117-01A-01D-1421-08		95216640	40318107	19	11139											
SMC3	9126	broad.mit.edu	37	10	112358023	112358023	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	C	112358023	A	C	112358023	3	2	174	1	0	0	0	0	1	0	0	0	14797	188	7	5	2321	5	SMC3	10	112358023	Missense_Mutation	SNP	A	TCGA-B0-5117-01A-01D-1421-08	17141383	112358023	23176724	20	11140											
RAB11FIP2	22841	broad.mit.edu	37	10	119798885	119798885	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	G	119798885	C	G	119798885	3	3	174	1	0	0	0	0	1	0	0	0	12907	797	28	4	687	4	RAB11FIP2	10	119798885	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08	7440862	119798885	15735862	21	11141											
OR51F1	256892	broad.mit.edu	37	11	4791095	4791095	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	4791095	C	T	4791095	3	4	174	1	0	0	0	0	1	0	0	0	11103	739	26	2	888	2	OR51F1	11	4791095	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08		4791095	130215421	22	11142											
GPR137	56834	broad.mit.edu	37	11	64056826	64056826	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	64056826	C	T	64056826	3	4	174	1	0	0	0	0	1	0	0	0	6652	739	26	2	1557	2	GPR137	11	64056826	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08	59265731	64056826	70949690	23	11143											
FOLH1B	219595	broad.mit.edu	37	11	89405323	89405326	+	RNA	DEL	TTTA	TTTA	-	rs34562444		TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	-	89405326	TTTA	-	89405323	6	5	174	0	1	1	0	1	0	0	0	0	5987	1740	60	0		0	FOLH1B	11	89405323	RNA	DEL	TTTA	TCGA-B0-5117-01A-01D-1421-08	25348497	89405323	45601193	24	11144											
PPFIBP1	8496	broad.mit.edu	37	12	27787945	27787945	+	Missense_Mutation	SNP	G	G	T	rs148953958		TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	27787945	G	T	27787945	3	4	174	1	0	0	0	0	1	0	0	0	12320	1145	40	4	173	4	PPFIBP1	12	27787945	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08		27787945	106063950	25	11145											
LARP4	113251	broad.mit.edu	37	12	50831576	50831580	+	Frame_Shift_Del	DEL	TTGTA	TTGTA	-			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	-	50831580	TTGTA	-	50831576	7	5	174	1	0	1	0	1	0	0	0	0	8637	1712	60	0	616	0	LARP4	12	50831576	Frame_Shift_Del	DEL	TTGTA	TCGA-B0-5117-01A-01D-1421-08	23043631	50831576	83020319	26	11146											
NCOR2	9612	broad.mit.edu	37	12	124856836	124856837	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	G	124856837	-	G	124856836	7	5	174	1	0	1	1	0	0	0	0	0	10243	768	27	0	5141	0	NCOR2	12	124856836	Frame_Shift_Ins	INS	-	TCGA-B0-5117-01A-01D-1421-08	74025260	124856836	8995059	27	11147											
SGCG	6445	broad.mit.edu	37	13	23869612	23869612	+	Silent	SNP	G	G	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	23869612	G	T	23869612	2	4	174	1	0	0	0	0	0	0	0	1	14216	1132	40	4		4	SGCG	13	23869612	Silent	SNP	G	TCGA-B0-5117-01A-01D-1421-08		23869612	91300266	28	11148											
LCP1	3936	broad.mit.edu	37	13	46730641	46730641	+	Silent	SNP	C	C	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	46730641	C	T	46730641	2	4	174	1	0	0	0	0	0	0	0	1	8698	726	26	2		2	LCP1	13	46730641	Silent	SNP	C	TCGA-B0-5117-01A-01D-1421-08	22861029	46730641	68439237	29	11149											
NEK5	341676	broad.mit.edu	37	13	52676276	52676276	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	G	52676276	C	G	52676276	3	3	174	1	0	0	0	0	1	0	0	0	10334	825	29	4	1416	4	NEK5	13	52676276	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08	5945635	52676276	62493602	30	11150											
IGDCC3	9543	broad.mit.edu	37	15	65667723	65667723	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	65667723	C	A	65667723	4	1	174	1	0	0	0	0	0	1	0	0	7575	835	29	4	2375	4	IGDCC3	15	65667723	Nonsense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08		65667723	36863669	31	11151											
ABCC6	368	broad.mit.edu	37	16	16295884	16295884	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	16295884	C	T	16295884	3	4	174	1	0	0	0	0	1	0	0	0	57	739	26	2	3453	2	ABCC6	16	16295884	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08		16295884	74058869	32	11152											
ITGAM	3684	broad.mit.edu	37	16	31308843	31308843	+	Silent	SNP	C	C	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	31308843	C	A	31308843	2	1	174	1	0	0	0	0	0	0	0	1	7894	668	24	4		4	ITGAM	16	31308843	Silent	SNP	C	TCGA-B0-5117-01A-01D-1421-08	15012959	31308843	59045910	33	11153											
MTHFSD	64779	broad.mit.edu	37	16	86582080	86582080	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	86582080	G	A	86582080	3	1	174	1	0	0	0	0	1	0	0	0	9940	1203	42	2	830	2	MTHFSD	16	86582080	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08	55273237	86582080	3772673	34	11154											
SLC16A13	201232	broad.mit.edu	37	17	6941493	6941493	+	Silent	SNP	C	C	T			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	T	6941493	C	T	6941493	2	4	174	1	0	0	0	0	0	0	0	1	14419	883	31	1		1	SLC16A13	17	6941493	Silent	SNP	C	TCGA-B0-5117-01A-01D-1421-08		6941493	74253717	35	11155											
TP53	7157	broad.mit.edu	37	17	7578272	7578272	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	7578272	G	A	7578272	3	1	174	1	0	0	0	0	1	0	0	0	16393	1319	46	2	717	2	TP53	17	7578272	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08	636779	7578272	73616938	36	11156											
RYR1	6261	broad.mit.edu	37	19	39019676	39019676	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	39019676	G	A	39019676	3	1	174	1	0	0	0	0	1	0	0	0	13781	1087	38	1	11422	1	RYR1	19	39019676	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08		39019676	20109307	37	11157											
PRX	57716	broad.mit.edu	37	19	40901891	40901891	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	G	40901891	C	G	40901891	3	3	174	1	0	0	0	0	1	0	0	0	12652	922	32	4	2021	4	PRX	19	40901891	Missense_Mutation	SNP	C	TCGA-B0-5117-01A-01D-1421-08	1882215	40901891	18227092	38	11158											
KLK4	9622	broad.mit.edu	37	19	51412533	51412533	+	Silent	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	51412533	G	A	51412533	2	1	174	1	0	0	0	0	0	0	0	1	8413	962	34	2		2	KLK4	19	51412533	Silent	SNP	G	TCGA-B0-5117-01A-01D-1421-08	10510642	51412533	7716450	39	11159											
UQCR10	29796	broad.mit.edu	37	22	30163417	30163417	+	Silent	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	30163417	G	A	30163417	2	1	174	1	0	0	0	0	0	0	0	1	17028	1368	48	2		2	UQCR10	22	30163417	Silent	SNP	G	TCGA-B0-5117-01A-01D-1421-08		30163417	21141149	40	11160											
TTLL1	25809	broad.mit.edu	37	22	43459908	43459908	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	A	43459908	G	A	43459908	3	1	174	1	0	0	0	0	1	0	0	0	16734	1115	39	1	633	1	TTLL1	22	43459908	Missense_Mutation	SNP	G	TCGA-B0-5117-01A-01D-1421-08	13296491	43459908	7844658	41	11161											
PLP2	5355	broad.mit.edu	37	X	49028442	49028443	+	Splice_Site	INS	-	-	G			TCGA-B0-5117-01A-01D-1421-08	TCGA-B0-5117-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10dbf5bc-9cb3-4d04-806d-cf0ddcc045be	45c68b6b-0bed-424d-9a77-4f87bbaa3649	G	49028443	-	G	49028442	8	5	174	1	0	1	1	0	0	0	1	0	12112	1507	52	0	97	0	PLP2	23	49028442	Splice_Site	INS	-	TCGA-B0-5117-01A-01D-1421-08		49028442	106242118	42	11162											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu	37	1	11291426	11291426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	11291426	C	A	11291426	3	1	175	1	0	0	0	0	1	0	0	0	9961	564	20	4	5237	4	MTOR	1	11291426	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08		11291426	237959195	1	11163											
COL8A2	1296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36563552	36563552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	36563552	A	C	36563552	3	2	175	1	0	0	0	0	1	0	0	0	3708	246	9	5	385	5	COL8A2	1	36563552	Missense_Mutation	SNP	A	TCGA-B0-5119-01A-02D-1421-08	25272126	36563552	212687069	2	11164											
NGF	4803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	115829228	115829228	+	Silent	SNP	C	C	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	115829228	C	A	115829228	2	1	175	1	0	0	0	0	0	0	0	1	10402	581	21	4		4	NGF	1	115829228	Silent	SNP	C	TCGA-B0-5119-01A-02D-1421-08	79265676	115829228	133421393	3	11165											
RGL1	23179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183835159	183835159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	183835159	A	G	183835159	3	3	175	1	0	0	0	0	1	0	0	0	13289	246	9	3	496	3	RGL1	1	183835159	Missense_Mutation	SNP	A	TCGA-B0-5119-01A-02D-1421-08	68005931	183835159	65415462	4	11166											
PPP1R15B	84919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	204380314	204380314	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	204380314	C	A	204380314	4	1	175	1	0	0	0	0	0	1	0	0	12374	661	23	4	1923	4	PPP1R15B	1	204380314	Nonsense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	20545155	204380314	44870307	5	11167											
RBBP5	5929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205069187	205069187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	205069187	G	T	205069187	3	4	175	1	0	0	0	0	1	0	0	0	13115	1348	47	4	886	4	RBBP5	1	205069187	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	688873	205069187	44181434	6	11168											
SMYD2	56950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	214510074	214510074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	214510074	G	A	214510074	3	1	175	1	0	0	0	0	1	0	0	0	14835	1116	39	1	1295	1	SMYD2	1	214510074	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	9440887	214510074	34740547	7	11169											
TPO	7173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1440117	1440117	+	Missense_Mutation	SNP	C	C	A	rs138509145		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	1440117	C	A	1440117	3	1	175	1	0	0	0	0	1	0	0	0	16422	768	27	4	457	4	TPO	2	1440117	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08		1440117	241759256	8	11170											
ASXL2	55252	hgsc.bcm.edu;ucsc.edu	37	2	25973133	25973136	+	Frame_Shift_Del	DEL	CACT	CACT	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	CACT	CACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	25973136	CACT	-	25973133	7	5	175	1	0	1	0	1	0	0	0	0	1067	478	17	0	3023	0	ASXL2	2	25973133	Frame_Shift_Del	DEL	CACT	TCGA-B0-5119-01A-02D-1421-08	24533016	25973133	217226240	9	11171											
FAM179A	165186	broad.mit.edu;ucsc.edu	37	2	29221046	29221048	+	In_Frame_Del	DEL	CAT	-	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	29221048	-	-	29221046	7	5	175	1	0	1	0	1	0	0	0	0	5509	709	25	0	72	0	FAM179A	2	29221046	In_Frame_Del	DEL	CAT	TCGA-B0-5119-01A-02D-1421-08	3247913	29221046	213978327	10	11172											
PAPOLG	64895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61020826	61020826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	61020826	C	T	61020826	3	4	175	1	0	0	0	0	1	0	0	0	11438	565	20	2	1814	2	PAPOLG	2	61020826	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	31799780	61020826	182178547	11	11173											
WDR33	55339	hgsc.bcm.edu;ucsc.edu	37	2	128481936	128481937	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	AT	128481937	-	AT	128481936	7	5	175	1	0	1	1	0	0	0	0	0	17299	242	9	0	2891	0	WDR33	2	128481936	Frame_Shift_Ins	INS	-	TCGA-B0-5119-01A-02D-1421-08	67461110	128481936	114717437	12	11174											
SNED1	25992	broad.mit.edu	37	2	241991198	241991199	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	241991199	G	G	241991198	7	5	175	1	0	1	1	0	0	0	0	0	14858	535	19	0	1823	0	SNED1	2	241991198	Frame_Shift_Ins	INS	-	TCGA-B0-5119-01A-02D-1421-08	113509262	241991198	1208175	13	11175											
ANO10	55129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	43618354	43618354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	43618354	T	C	43618354	3	2	175	1	0	0	0	0	1	0	0	0	696	1406	49	3	1022	3	ANO10	3	43618354	Missense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08		43618354	154404076	14	11176											
PBRM1	55193	hgsc.bcm.edu	37	3	52649437	52649437	+	Silent	SNP	G	G	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	52649437	G	A	52649437	2	1	175	1	0	0	0	0	0	0	0	1	11498	1277	45	2		2	PBRM1	3	52649437	Silent	SNP	G	TCGA-B0-5119-01A-02D-1421-08	9031083	52649437	145372993	15	11177											
FSTL1	11167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	120130797	120130797	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	120130797	T	G	120130797	3	3	175	1	0	0	0	0	1	0	0	0	6084	1580	55	5	756	5	FSTL1	3	120130797	Missense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08	67481360	120130797	77891633	16	11178											
COL6A6	131873	hgsc.bcm.edu;ucsc.edu	37	3	130293169	130293169	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	130293169	A	-	130293169	7	5	175	1	0	1	0	1	0	0	0	0	3705	275	10	0	3373	0	COL6A6	3	130293169	Frame_Shift_Del	DEL	A	TCGA-B0-5119-01A-02D-1421-08	10162372	130293169	67729261	17	11179											
PLOD2	5352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	145820619	145820619	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	145820619	C	G	145820619	3	3	175	1	0	0	0	0	1	0	0	0	12109	835	29	4	1632	4	PLOD2	3	145820619	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	15527450	145820619	52201811	18	11180											
MYNN	55892	broad.mit.edu;hgsc.bcm.edu	37	3	169492076	169492076	+	RNA	SNP	A	A	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	169492076	A	G	169492076	1	3	175	0	1	0	0	0	0	0	0	0	10068	348	12	3		3	MYNN	3	169492076	RNA	SNP	A	TCGA-B0-5119-01A-02D-1421-08	23671457	169492076	28530354	19	11181											
NAALADL2	254827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	174815003	174815003	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	174815003	C	G	174815003	3	3	175	1	0	0	0	0	1	0	0	0	10137	913	32	4	473	4	NAALADL2	3	174815003	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	5322927	174815003	23207427	20	11182											
ZBTB49	166793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	4304210	4304210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	4304210	T	G	4304210	3	3	175	1	0	0	0	0	1	0	0	0	17562	1551	54	5	653	5	ZBTB49	4	4304210	Missense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08		4304210	186850066	21	11183											
RICTOR	253260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	38963027	38963027	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	38963027	T	-	38963027	7	5	175	1	0	1	0	1	0	0	0	0	13371	1580	55	0	3697	0	RICTOR	5	38963027	Frame_Shift_Del	DEL	T	TCGA-B0-5119-01A-02D-1421-08		38963027	141952233	22	11184											
F2R	2149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	76028881	76028881	+	Silent	SNP	C	C	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	76028881	C	A	76028881	2	1	175	1	0	0	0	0	0	0	0	1	5345	900	32	4		4	F2R	5	76028881	Silent	SNP	C	TCGA-B0-5119-01A-02D-1421-08	37065854	76028881	104886379	23	11185											
SHROOM1	134549	broad.mit.edu	37	5	132158730	132158730	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	132158730	T	T	132158730	3	4	175	1	0	0	0	0	1	0	0	0	14306	536	19	1	245	1	SHROOM1	5	132158730	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	56129849	132158730	48756530	24	11186											
SAR1B	51128	broad.mit.edu;hgsc.bcm.edu	37	5	133944073	133944073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	133944073	T	A	133944073	3	1	175	1	0	0	0	0	1	0	0	0	13853	1667	58	5	135	5	SAR1B	5	133944073	Missense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08	1785343	133944073	46971187	25	11187											
OR2W1	26692	broad.mit.edu;hgsc.bcm.edu	37	6	29012082	29012082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	29012082	T	A	29012082	3	1	175	1	0	0	0	0	1	0	0	0	11039	1696	59	5	95	5	OR2W1	6	29012082	Missense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08		29012082	142102985	26	11188											
ITPR3	3710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33639879	33639879	+	Silent	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	33639879	C	T	33639879	2	4	175	1	0	0	0	0	0	0	0	1	7929	639	23	1		1	ITPR3	6	33639879	Silent	SNP	C	TCGA-B0-5119-01A-02D-1421-08	4627797	33639879	137475188	27	11189											
CDKN1A	1026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36652157	36652157	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	36652157	G	C	36652157	3	2	175	1	0	0	0	0	1	0	0	0	3160	1194	42	4	281	4	CDKN1A	6	36652157	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	3012278	36652157	134462910	28	11190											
THEMIS	387357	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	128150971	128150971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	128150971	T	C	128150971	3	2	175	1	0	0	0	0	1	0	0	0	15872	1580	55	3	1703	3	THEMIS	6	128150971	Missense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08	91498814	128150971	42964096	29	11191											
NRG1	3084	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	32505280	32505280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	32505280	G	C	32505280	3	2	175	1	0	0	0	0	1	0	0	0	10654	1000	35	4	1319	4	NRG1	8	32505280	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08		32505280	113858742	30	11192											
VCPIP1	80124	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67578932	67578932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	67578932	C	A	67578932	3	1	175	1	0	0	0	0	1	0	0	0	17153	507	18	4	3418	4	VCPIP1	8	67578932	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	35073652	67578932	78785090	31	11193	130	2									
VCPIP1	80124	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67578933	67578933	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	67578933	C	G	67578933	3	3	175	1	0	0	0	0	1	0	0	0	17153	680	24	4	3419	4	VCPIP1	8	67578933	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	1	67578933	78785089	32	11194	130	2									
SULF1	23213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	70512843	70512843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	70512843	C	G	70512843	3	3	175	1	0	0	0	0	1	0	0	0	15382	681	24	4	758	4	SULF1	8	70512843	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	2933910	70512843	75851179	33	11195											
VPS13B	157680	broad.mit.edu;hgsc.bcm.edu	37	8	100847774	100847774	+	Silent	SNP	A	A	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	100847774	A	G	100847774	2	3	175	1	0	0	0	0	0	0	0	1	17202	117	5	3		3	VPS13B	8	100847774	Silent	SNP	A	TCGA-B0-5119-01A-02D-1421-08	30334931	100847774	45516248	34	11196											
FBXO43	286151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	101153402	101153402	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	101153402	C	-	101153402	7	5	175	1	0	1	0	1	0	0	0	0	5759	912	32	0	1062	0	FBXO43	8	101153402	Frame_Shift_Del	DEL	C	TCGA-B0-5119-01A-02D-1421-08	305628	101153402	45210620	35	11197											
LAMC3	10319	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133914596	133914596	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	133914596	G	C	133914596	3	2	175	1	0	0	0	0	1	0	0	0	8623	1377	48	4	1266	4	LAMC3	9	133914596	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08		133914596	7298835	36	11198											
OLFM1	10439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	137990174	137990174	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	137990174	G	C	137990174	3	2	175	1	0	0	0	0	1	0	0	0	10859	1377	48	4	469	4	OLFM1	9	137990174	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	4075578	137990174	3223257	37	11199											
MLLT10	8028	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	22002761	22002761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	22002761	C	T	22002761	3	4	175	1	0	0	0	0	1	0	0	0	9633	913	32	2	1862	2	MLLT10	10	22002761	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08		22002761	113531986	38	11200											
BICC1	80114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	60558280	60558280	+	Silent	SNP	A	A	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	60558280	A	G	60558280	2	3	175	1	0	0	0	0	0	0	0	1	1427	204	8	3		3	BICC1	10	60558280	Silent	SNP	A	TCGA-B0-5119-01A-02D-1421-08	38555519	60558280	74976467	39	11201											
OIT3	170392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	74673124	74673124	+	Silent	SNP	T	T	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	74673124	T	C	74673124	2	2	175	1	0	0	0	0	0	0	0	1	10856	1683	59	3		3	OIT3	10	74673124	Silent	SNP	T	TCGA-B0-5119-01A-02D-1421-08	14114844	74673124	60861623	40	11202											
EIF3M	10480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32610272	32610272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	32610272	T	C	32610272	3	2	175	1	0	0	0	0	1	0	0	0	5025	1580	55	3	318	3	EIF3M	11	32610272	Missense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08		32610272	102396244	41	11203											
C11orf74	119710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	36680650	36680650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	36680650	C	T	36680650	3	4	175	1	0	0	0	0	1	0	0	0	1664	855	30	2	598	2	C11orf74	11	36680650	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	4070378	36680650	98325866	42	11204											
PPP2R1B	5519	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111624212	111624212	+	Silent	SNP	G	G	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	111624212	G	T	111624212	2	4	175	1	0	0	0	0	0	0	0	1	12393	1335	47	4		4	PPP2R1B	11	111624212	Silent	SNP	G	TCGA-B0-5119-01A-02D-1421-08	74943562	111624212	23382304	43	11205											
SLC11A2	4891	hgsc.bcm.edu;ucsc.edu	37	12	51384633	51384636	+	Frame_Shift_Del	DEL	AATG	AATG	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	AATG	AATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	51384636	AATG	-	51384633	7	5	175	1	0	1	0	1	0	0	0	0	14394	372	13	0	255	0	SLC11A2	12	51384633	Frame_Shift_Del	DEL	AATG	TCGA-B0-5119-01A-02D-1421-08		51384633	82467262	44	11206											
DCN	1634	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	91545456	91545456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	91545456	C	A	91545456	3	1	175	1	0	0	0	0	1	0	0	0	4299	623	22	4	227	4	DCN	12	91545456	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	40160823	91545456	42306439	45	11207											
NOS1	4842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117703219	117703219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	117703219	C	T	117703219	3	4	175	1	0	0	0	0	1	0	0	0	10548	884	31	1	2338	1	NOS1	12	117703219	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	26157763	117703219	16148676	46	11208											
DNAH10	196385	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124272412	124272412	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	124272412	A	T	124272412	4	4	175	1	0	0	0	0	0	1	0	0	4600	247	9	5	1338	5	DNAH10	12	124272412	Nonsense_Mutation	SNP	A	TCGA-B0-5119-01A-02D-1421-08	6569193	124272412	9579483	47	11209											
CHFR	55743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133435664	133435664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	133435664	C	T	133435664	3	4	175	1	0	0	0	0	1	0	0	0	3339	884	31	1	1101	1	CHFR	12	133435664	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	9163252	133435664	416231	48	11210											
USPL1	10208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	31232080	31232081	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	31232081	CA	-	31232080	7	5	175	1	0	1	0	1	0	0	0	0	17104	581	21	0	1896	0	USPL1	13	31232080	Frame_Shift_Del	DEL	CA	TCGA-B0-5119-01A-02D-1421-08		31232080	83937798	49	11211											
C13orf18	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	46919734	46919734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	46919734	C	A	46919734	3	1	175	1	0	0	0	0	1	0	0	0	1722	724	25	4	367	4	C13orf18	13	46919734	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	15687654	46919734	68250144	50	11212											
PCDH20	64881	hgsc.bcm.edu;ucsc.edu	37	13	61985426	61985426	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	61985426	T	-	61985426	7	5	175	1	0	1	0	1	0	0	0	0	11522	1493	52	0	53	0	PCDH20	13	61985426	Frame_Shift_Del	DEL	T	TCGA-B0-5119-01A-02D-1421-08	15065692	61985426	53184452	51	11213											
PCDH20	64881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	61985497	61985497	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	61985497	C	G	61985497	3	3	175	1	0	0	0	0	1	0	0	0	11522	478	17	4	124	4	PCDH20	13	61985497	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	71	61985497	53184381	52	11214											
C13orf34	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	73309117	73309117	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	73309117	G	C	73309117	3	2	175	1	0	0	0	0	1	0	0	0	1730	942	33	4	290	4	C13orf34	13	73309117	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	11323620	73309117	41860761	53	11215											
AKAP6	9472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	33292027	33292027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	33292027	G	T	33292027	3	4	175	1	0	0	0	0	1	0	0	0	455	1348	47	4	5054	4	AKAP6	14	33292027	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08		33292027	74057513	54	11216	131	2									
AKAP6	9472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	33292028	33292028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	33292028	G	T	33292028	3	4	175	1	0	0	0	0	1	0	0	0	455	1203	42	4	5055	4	AKAP6	14	33292028	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	1	33292028	74057512	55	11217	131	2									
WDR25	79446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	100847489	100847489	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	100847489	T	A	100847489	4	1	175	1	0	0	0	0	0	1	0	0	17294	1442	50	5	230	5	WDR25	14	100847489	Nonsense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08	67555461	100847489	6502051	56	11218											
TJP1	7082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	30012148	30012148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	30012148	T	A	30012148	3	1	175	1	0	0	0	0	1	0	0	0	15941	1754	61	5	2446	5	TJP1	15	30012148	Missense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08		30012148	72519244	57	11219											
RAD51	5888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40993342	40993342	+	Silent	SNP	A	A	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	40993342	A	T	40993342	2	4	175	1	0	0	0	0	0	0	0	1	12998	117	5	5		5	RAD51	15	40993342	Silent	SNP	A	TCGA-B0-5119-01A-02D-1421-08	10981194	40993342	61538050	58	11220											
MYO5C	55930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52510811	52510811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	52510811	C	T	52510811	3	4	175	1	0	0	0	0	1	0	0	0	10087	864	30	2	1409	2	MYO5C	15	52510811	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	11517469	52510811	50020581	59	11221											
ACAN	176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89382024	89382024	+	Silent	SNP	C	C	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	89382024	C	G	89382024	2	3	175	1	0	0	0	0	0	0	0	1	117	610	22	4		4	ACAN	15	89382024	Silent	SNP	C	TCGA-B0-5119-01A-02D-1421-08	36871213	89382024	13149368	60	11222											
POLR3K	51728	hgsc.bcm.edu	37	16	103487	103489	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	103489	TGT	-	103487	7	5	175	1	0	1	0	1	0	0	0	0	12244	1464	51	0	238	0	POLR3K	16	103487	In_Frame_Del	DEL	TGT	TCGA-B0-5119-01A-02D-1421-08		103487	90251266	61	11223											
SOLH	6650	hgsc.bcm.edu	37	16	601338	601338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	601338	G	A	601338	3	1	175	1	0	0	0	0	1	0	0	0	14938	1290	45	2	2121	2	SOLH	16	601338	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	497851	601338	89753415	62	11224											
TELO2	9894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1552946	1552946	+	Silent	SNP	G	G	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	1552946	G	T	1552946	2	4	175	1	0	0	0	0	0	0	0	1	15769	1277	45	4		4	TELO2	16	1552946	Silent	SNP	G	TCGA-B0-5119-01A-02D-1421-08	951608	1552946	88801807	63	11225											
UBN1	29855	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4903144	4903144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	4903144	A	C	4903144	3	2	175	1	0	0	0	0	1	0	0	0	16904	15	1	5	228	5	UBN1	16	4903144	Missense_Mutation	SNP	A	TCGA-B0-5119-01A-02D-1421-08	3350198	4903144	85451609	64	11226											
C16orf62	57020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	19576270	19576270	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	19576270	A	C	19576270	3	2	175	1	0	0	0	0	1	0	0	0	1827	43	2	5	121	5	C16orf62	16	19576270	Missense_Mutation	SNP	A	TCGA-B0-5119-01A-02D-1421-08	14673126	19576270	70778483	65	11227											
LOC81691	81691	broad.mit.edu;ucsc.edu	37	16	20851655	20851655	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	20851655	T	T	20851655	3	4	175	1	0	0	0	0	1	0	0	0	8897	1290	45	4	1545	4	LOC81691	16	20851655	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	1275385	20851655	69503098	66	11228											
SHCBP1	79801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	46652119	46652119	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	46652119	A	-	46652119	7	5	175	1	0	1	0	1	0	0	0	0	14287	372	13	0	1797	0	SHCBP1	16	46652119	Frame_Shift_Del	DEL	A	TCGA-B0-5119-01A-02D-1421-08	25800464	46652119	43702634	67	11229											
SPG7	6687	hgsc.bcm.edu;ucsc.edu	37	16	89616935	89616935	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	89616935	A	-	89616935	7	5	175	1	0	1	0	1	0	0	0	0	15056	246	9	0	1897	0	SPG7	16	89616935	Frame_Shift_Del	DEL	A	TCGA-B0-5119-01A-02D-1421-08	42964816	89616935	737818	68	11230											
PRPF8	10594	broad.mit.edu;ucsc.edu	37	17	1582621	1582621	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	1582621	A	A	1582621	3	1	175	1	0	0	0	0	1	0	0	0	12585	1203	42	2	5770	2	PRPF8	17	1582621	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08		1582621	79612589	69	11231											
CACNA1G	8913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48652948	48652948	+	Silent	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	48652948	C	T	48652948	2	4	175	1	0	0	0	0	0	0	0	1	2546	581	21	2		2	CACNA1G	17	48652948	Silent	SNP	C	TCGA-B0-5119-01A-02D-1421-08	47070327	48652948	32542262	70	11232											
MRC2	9902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	60757631	60757631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	60757631	G	A	60757631	3	1	175	1	0	0	0	0	1	0	0	0	9765	1319	46	2	2457	2	MRC2	17	60757631	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	12104683	60757631	20437579	71	11233											
RECQL5	9400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73624786	73624786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	73624786	T	A	73624786	3	1	175	1	0	0	0	0	1	0	0	0	13216	1667	58	5	445	5	RECQL5	17	73624786	Missense_Mutation	SNP	T	TCGA-B0-5119-01A-02D-1421-08	12867155	73624786	7570424	72	11234											
B4GALT6	9331	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	29207086	29207086	+	Splice_Site	SNP	T	T	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	29207086	T	G	29207086	5	3	175	1	0	0	0	0	0	0	1	0	1275	1536	53	5	385	5	B4GALT6	18	29207086	Splice_Site	SNP	T	TCGA-B0-5119-01A-02D-1421-08		29207086	48870162	73	11235											
STK11	6794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1220429	1220429	+	Silent	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	1220429	C	T	1220429	2	4	175	1	0	0	0	0	0	0	0	1	15299	477	17	2		2	STK11	19	1220429	Silent	SNP	C	TCGA-B0-5119-01A-02D-1421-08		1220429	57908554	74	11236											
MYO1F	4542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8592225	8592225	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	8592225	A	T	8592225	3	4	175	1	0	0	0	0	1	0	0	0	10080	304	11	5	853	5	MYO1F	19	8592225	Missense_Mutation	SNP	A	TCGA-B0-5119-01A-02D-1421-08	7371796	8592225	50536758	75	11237											
OR7G1	125962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9225524	9225524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	9225524	C	A	9225524	3	1	175	1	0	0	0	0	1	0	0	0	11229	608	21	4	93	4	OR7G1	19	9225524	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	633299	9225524	49903459	76	11238											
OR7G1	125962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9226001	9226001	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	9226001	G	C	9226001	3	2	175	1	0	0	0	0	1	0	0	0	11229	942	33	4	570	4	OR7G1	19	9226001	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08	477	9226001	49902982	77	11239											
PAK4	10298	broad.mit.edu;ucsc.edu	37	19	39664492	39664492	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	39664492	A	A	39664492	3	1	175	1	0	0	0	0	1	0	0	0	11410	623	22	4	950	4	PAK4	19	39664492	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	30438491	39664492	19464491	78	11240											
PRKD2	25865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	47177845	47177845	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	G	47177845	C	G	47177845	3	3	175	1	0	0	0	0	1	0	0	0	12529	652	23	4	68	4	PRKD2	19	47177845	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	7513353	47177845	11951138	79	11241											
PTPRH	5794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55693237	55693237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	55693237	C	T	55693237	3	4	175	1	0	0	0	0	1	0	0	0	12816	652	23	1	118	1	PTPRH	19	55693237	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	8515392	55693237	3435746	80	11242											
ZNF805	390980	broad.mit.edu;ucsc.edu	37	19	57765250	57765250	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	57765250	T	T	57765250	4	4	175	1	0	0	0	0	0	1	0	0	18184	180	7	5	1077	5	ZNF805	19	57765250	Nonsense_Mutation	SNP	A	TCGA-B0-5119-01A-02D-1421-08	2072013	57765250	1363733	81	11243											
PCK1	5105	hgsc.bcm.edu;ucsc.edu	37	20	56140707	56140709	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	CAA	CAA	CAA	-	CAA	CAA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	56140709	CAA	-	56140707	7	5	175	1	0	1	0	1	0	0	0	0	11588	816	29	0	1750	0	PCK1	20	56140707	In_Frame_Del	DEL	CAA	TCGA-B0-5119-01A-02D-1421-08		56140707	6884813	82	11244											
PI4KA	5297	broad.mit.edu;ucsc.edu	37	22	21152931	21152931	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	21152931	C	C	21152931	3	2	175	1	0	0	0	0	1	0	0	0	11880	156	6	5	4415	5	PI4KA	22	21152931	Missense_Mutation	SNP	A	TCGA-B0-5119-01A-02D-1421-08		21152931	30151635	83	11245											
PIWIL3	440822	hgsc.bcm.edu;ucsc.edu	37	22	25131751	25131754	+	Frame_Shift_Del	DEL	TGTG	TGTG	-	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	TGTG	TGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	-	25131754	TGTG	-	25131751	7	5	175	1	0	1	0	1	0	0	0	0	11966	1588	55	0	1126	0	PIWIL3	22	25131751	Frame_Shift_Del	DEL	TGTG	TCGA-B0-5119-01A-02D-1421-08	3978820	25131751	26172815	84	11246											
ADSL	158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	40742638	40742638	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	C	40742638	A	C	40742638	3	2	175	1	0	0	0	0	1	0	0	0	346	333	12	5	78	5	ADSL	22	40742638	Missense_Mutation	SNP	A	TCGA-B0-5119-01A-02D-1421-08	15610887	40742638	10561928	85	11247											
CELSR1	9620	broad.mit.edu;hgsc.bcm.edu	37	22	46807519	46807519	+	Silent	SNP	G	G	T	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	46807519	G	T	46807519	2	4	175	1	0	0	0	0	0	0	0	1	3223	1306	46	4		4	CELSR1	22	46807519	Silent	SNP	G	TCGA-B0-5119-01A-02D-1421-08	6064881	46807519	4497047	86	11248											
ATP1B4	23439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	119504657	119504657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	A	119504657	G	A	119504657	3	1	175	1	0	0	0	0	1	0	0	0	1135	1029	36	2	426	2	ATP1B4	23	119504657	Missense_Mutation	SNP	G	TCGA-B0-5119-01A-02D-1421-08		119504657	35765903	87	11249											
IRAK1	3654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153278782	153278782	+	Missense_Mutation	SNP	C	C	T	rs140583367		TCGA-B0-5119-01A-02D-1421-08	TCGA-B0-5119-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	414d47c7-41bb-4c83-8cdf-703fa0a46f01	82a1cf74-7f66-443b-8e5b-e72fdd121c94	T	153278782	C	T	153278782	3	4	175	1	0	0	0	0	1	0	0	0	7828	536	19	1	508	1	IRAK1	23	153278782	Missense_Mutation	SNP	C	TCGA-B0-5119-01A-02D-1421-08	33774125	153278782	1991778	88	11250											
ZCCHC17	51538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	31782970	31782970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	31782970	A	G	31782970	3	3	176	1	0	0	0	0	1	0	0	0	17597	217	8	3	27	3	ZCCHC17	1	31782970	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08		31782970	217467651	1	11251											
SNX27	81609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151611585	151611585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	151611585	A	G	151611585	3	3	176	1	0	0	0	0	1	0	0	0	14910	304	11	3	539	3	SNX27	1	151611585	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08	119828615	151611585	97639036	2	11252											
LAMC1	3915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183086460	183086460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	183086460	G	T	183086460	3	4	176	1	0	0	0	0	1	0	0	0	8621	1174	41	4	1604	4	LAMC1	1	183086460	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08	31474875	183086460	66164161	3	11253											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201047117	201047117	+	Silent	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	201047117	C	A	201047117	2	1	176	1	0	0	0	0	0	0	0	1	2549	581	21	4		4	CACNA1S	1	201047117	Silent	SNP	C	TCGA-B0-5120-01A-01D-1421-08	17960657	201047117	48203504	4	11254											
MIA3	375056	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	222826645	222826645	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	222826645	A	T	222826645	3	4	176	1	0	0	0	0	1	0	0	0	9572	14	1	5	4343	5	MIA3	1	222826645	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08	21779528	222826645	26423976	5	11255											
DISP1	84976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223178702	223178702	+	Silent	SNP	T	T	C	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	C	223178702	T	C	223178702	2	2	176	1	0	0	0	0	0	0	0	1	4541	1567	55	3		3	DISP1	1	223178702	Silent	SNP	T	TCGA-B0-5120-01A-01D-1421-08	352057	223178702	26071919	6	11256											
NUP133	55746	broad.mit.edu;hgsc.bcm.edu	37	1	229602504	229602504	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	229602504	C	A	229602504	5	1	176	1	0	0	0	0	0	0	1	0	10761	695	24	4	1438	4	NUP133	1	229602504	Splice_Site	SNP	C	TCGA-B0-5120-01A-01D-1421-08	6423802	229602504	19648117	7	11257											
WDR35	57539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	20138069	20138069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	20138069	C	T	20138069	3	4	176	1	0	0	0	0	1	0	0	0	17301	913	32	2	1532	2	WDR35	2	20138069	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08		20138069	223061304	8	11258											
DNMT3A	1788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	25467122	25467122	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	25467122	T	G	25467122	3	3	176	1	0	0	0	0	1	0	0	0	4678	1464	51	5	1021	5	DNMT3A	2	25467122	Missense_Mutation	SNP	T	TCGA-B0-5120-01A-01D-1421-08	5329053	25467122	217732251	9	11259											
EMILIN1	11117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27305157	27305157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	27305157	A	T	27305157	3	4	176	1	0	0	0	0	1	0	0	0	5095	333	12	5	732	5	EMILIN1	2	27305157	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08	1838035	27305157	215894216	10	11260											
VRK2	7444	broad.mit.edu;hgsc.bcm.edu	37	2	58313465	58313465	+	RNA	SNP	T	T	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	58313465	T	A	58313465	1	1	176	0	1	0	0	0	0	0	0	0	17232	1682	58	5		5	VRK2	2	58313465	RNA	SNP	T	TCGA-B0-5120-01A-01D-1421-08	31008308	58313465	184885908	11	11261											
ALMS1	7840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	73651718	73651718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	73651718	C	A	73651718	3	1	176	1	0	0	0	0	1	0	0	0	535	827	29	4	943	4	ALMS1	2	73651718	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08	15338253	73651718	169547655	12	11262											
SNRNP200	23020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	96962717	96962717	+	Missense_Mutation	SNP	C	C	T	rs144219123		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	96962717	C	T	96962717	3	4	176	1	0	0	0	0	1	0	0	0	14865	536	19	1	5077	1	SNRNP200	2	96962717	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08	23310999	96962717	146236656	13	11263											
PLA2R1	22925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160813103	160813103	+	Silent	SNP	A	A	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	160813103	A	G	160813103	2	3	176	1	0	0	0	0	0	0	0	1	12017	40	2	3		3	PLA2R1	2	160813103	Silent	SNP	A	TCGA-B0-5120-01A-01D-1421-08	63850386	160813103	82386270	14	11264											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52696277	52696278	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	52696278	-	T	52696277	7	5	176	1	0	1	1	0	0	0	0	0	11498	449	16	0	4608	0	PBRM1	3	52696277	Frame_Shift_Ins	INS	-	TCGA-B0-5120-01A-01D-1421-08		52696277	145326153	15	11265											
UGT2B4	7363	hgsc.bcm.edu	37	4	70359429	70359430	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	70359430	-	G	70359429	7	5	176	1	0	1	1	0	0	0	0	0	16973	175	7	0	754	0	UGT2B4	4	70359429	Frame_Shift_Ins	INS	-	TCGA-B0-5120-01A-01D-1421-08		70359429	120794847	16	11266											
PCDHB14	56122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140604554	140604554	+	Missense_Mutation	SNP	C	C	T	rs150245283	bycluster;byfrequency;by1000genomes	TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	140604554	C	T	140604554	3	4	176	1	0	0	0	0	1	0	0	0	11546	739	26	2	1479	2	PCDHB14	5	140604554	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08		140604554	40310706	17	11267											
FLT4	2324	broad.mit.edu;hgsc.bcm.edu	37	5	180047687	180047687	+	Silent	SNP	G	G	A	rs139263798	alternate_allele	TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	180047687	G	A	180047687	2	1	176	1	0	0	0	0	0	0	0	1	5951	1048	37	1		1	FLT4	5	180047687	Silent	SNP	G	TCGA-B0-5120-01A-01D-1421-08	39443133	180047687	867573	18	11268											
DDR1	780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	30866812	30866812	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	30866812	C	T	30866812	4	4	176	1	0	0	0	0	0	1	0	0	4338	711	25	2	2679	2	DDR1	6	30866812	Nonsense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08		30866812	140248255	19	11269											
KIAA0776	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	96997453	96997453	+	Silent	SNP	A	A	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	96997453	A	G	96997453	2	3	176	1	0	0	0	0	0	0	0	1	8200	202	7	3		3	KIAA0776	6	96997453	Silent	SNP	A	TCGA-B0-5120-01A-01D-1421-08	66130641	96997453	74117614	20	11270											
STXBP5	134957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	147685200	147685200	+	Silent	SNP	C	C	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	147685200	C	T	147685200	2	4	176	1	0	0	0	0	0	0	0	1	15368	581	21	2		2	STXBP5	6	147685200	Silent	SNP	C	TCGA-B0-5120-01A-01D-1421-08	50687747	147685200	23429867	21	11271											
SFRP4	6424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	37949276	37949276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	37949276	C	A	37949276	3	1	176	1	0	0	0	0	1	0	0	0	14176	710	25	4	250	4	SFRP4	7	37949276	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08		37949276	121189387	22	11272											
ZNF680	340252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	63981785	63981785	+	Silent	SNP	A	A	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	63981785	A	G	63981785	2	3	176	1	0	0	0	0	0	0	0	1	18099	349	13	3		3	ZNF680	7	63981785	Silent	SNP	A	TCGA-B0-5120-01A-01D-1421-08	26032509	63981785	95156878	23	11273											
LAMB4	22798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107763582	107763582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	107763582	G	A	107763582	3	1	176	1	0	0	0	0	1	0	0	0	8620	1319	46	2	5389	2	LAMB4	7	107763582	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08	43781797	107763582	51375081	24	11274											
SLC18A1	6570	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	20038369	20038369	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	20038369	A	T	20038369	3	4	176	1	0	0	0	0	1	0	0	0	14438	217	8	5	1530	5	SLC18A1	8	20038369	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08		20038369	126325653	25	11275											
RP1	6101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	55539331	55539331	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	55539331	A	T	55539331	3	4	176	1	0	0	0	0	1	0	0	0	13545	11	1	5	2899	5	RP1	8	55539331	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08	35500962	55539331	90824691	26	11276											
DCAF13	25879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	104444966	104444966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	104444966	A	T	104444966	3	4	176	1	0	0	0	0	1	0	0	0	4268	449	16	5	1264	5	DCAF13	8	104444966	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08	48905635	104444966	41919056	27	11277											
C9orf66	157983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	214612	214612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	214612	C	A	214612	3	1	176	1	0	0	0	0	1	0	0	0	2492	652	23	4	106	4	C9orf66	9	214612	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08		214612	140998819	28	11278											
ZNF782	158431	broad.mit.edu;ucsc.edu	37	9	99580322	99580322	+	Silent	SNP	G	A	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	99580322	A	A	99580322	2	1	176	1	0	0	0	0	0	0	0	1	18167	1277	45	2		2	ZNF782	9	99580322	Silent	SNP	G	TCGA-B0-5120-01A-01D-1421-08	99365710	99580322	41633109	29	11279											
LOXL4	84171	hgsc.bcm.edu;ucsc.edu	37	10	100018882	100018882	+	Missense_Mutation	SNP	G	G	C	rs151150208	alternate_allele	TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	C	100018882	G	C	100018882	3	2	176	1	0	0	0	0	1	0	0	0	8909	1115	39	4	1505	4	LOXL4	10	100018882	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08		100018882	35515865	30	11280											
PDZD8	118987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	119049791	119049791	+	Silent	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	119049791	C	A	119049791	2	1	176	1	0	0	0	0	0	0	0	1	11712	494	18	4		4	PDZD8	10	119049791	Silent	SNP	C	TCGA-B0-5120-01A-01D-1421-08	19030909	119049791	16484956	31	11281											
NAV2	89797	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	20124911	20124911	+	Silent	SNP	G	G	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	20124911	G	A	20124911	2	1	176	1	0	0	0	0	0	0	0	1	10191	1335	47	2		2	NAV2	11	20124911	Silent	SNP	G	TCGA-B0-5120-01A-01D-1421-08		20124911	114881605	32	11282											
MS4A14	84689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60164109	60164109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	C	60164109	G	C	60164109	3	2	176	1	0	0	0	0	1	0	0	0	9865	1059	37	4	60	4	MS4A14	11	60164109	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08	40039198	60164109	74842407	33	11283											
SLC22A10	387775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63057715	63057715	+	Silent	SNP	C	C	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	63057715	C	G	63057715	2	3	176	1	0	0	0	0	0	0	0	1	14454	668	24	4		4	SLC22A10	11	63057715	Silent	SNP	C	TCGA-B0-5120-01A-01D-1421-08	2893606	63057715	71948801	34	11284											
DRD2	1813	broad.mit.edu;hgsc.bcm.edu	37	11	113295088	113295088	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	113295088	C	T	113295088	5	4	176	1	0	0	0	0	0	0	1	0	4759	521	18	2	1073	2	DRD2	11	113295088	Splice_Site	SNP	C	TCGA-B0-5120-01A-01D-1421-08	50237373	113295088	21711428	35	11285											
SLC2A14	144195	broad.mit.edu;hgsc.bcm.edu	37	12	7967026	7967026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	7967026	C	A	7967026	3	1	176	1	0	0	0	0	1	0	0	0	14556	680	24	4	117	4	SLC2A14	12	7967026	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08		7967026	125884869	36	11286											
M6PR	4074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9098098	9098098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	9098098	C	A	9098098	3	1	176	1	0	0	0	0	1	0	0	0	9147	594	21	4	594	4	M6PR	12	9098098	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08	1131072	9098098	124753797	37	11287											
PPHLN1	51535	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	42748967	42748967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	42748967	A	T	42748967	3	4	176	1	0	0	0	0	1	0	0	0	12322	246	9	5	277	5	PPHLN1	12	42748967	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08	33650869	42748967	91102928	38	11288											
PFKM	5213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48516579	48516579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	C	48516579	G	C	48516579	3	2	176	1	0	0	0	0	1	0	0	0	11772	1319	46	4	245	4	PFKM	12	48516579	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08	5767612	48516579	85335316	39	11289											
AMHR2	269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53819616	53819616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	53819616	C	A	53819616	3	1	176	1	0	0	0	0	1	0	0	0	573	506	18	4	787	4	AMHR2	12	53819616	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08	5303037	53819616	80032279	40	11290											
TMC3	342125	broad.mit.edu	37	15	81633742	81633742	+	Silent	SNP	A	G	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	81633742	G	G	81633742	2	3	176	1	0	0	0	0	0	0	0	1	15998	243	9	3		3	TMC3	15	81633742	Silent	SNP	A	TCGA-B0-5120-01A-01D-1421-08		81633742	20897650	41	11291											
RUNDC2A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	12136850	12136850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	12136850	G	T	12136850	3	4	176	1	0	0	0	0	1	0	0	0	13756	1261	44	4	362	4	RUNDC2A	16	12136850	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08		12136850	78217903	42	11292											
CMTM1	113540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	66612797	66612797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	66612797	A	G	66612797	3	3	176	1	0	0	0	0	1	0	0	0	3584	295	11	3	768	3	CMTM1	16	66612797	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08	54475947	66612797	23741956	43	11293											
SERPINF2	5345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1648687	1648687	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	1648687	C	T	1648687	4	4	176	1	0	0	0	0	0	1	0	0	14128	595	21	2	173	2	SERPINF2	17	1648687	Nonsense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08		1648687	79546523	44	11294											
SMG6	23293	broad.mit.edu;hgsc.bcm.edu	37	17	1964808	1964808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	1964808	A	G	1964808	3	3	176	1	0	0	0	0	1	0	0	0	14810	304	11	3	25	3	SMG6	17	1964808	Missense_Mutation	SNP	A	TCGA-B0-5120-01A-01D-1421-08	316121	1964808	79230402	45	11295											
POLR2A	5430	hgsc.bcm.edu;ucsc.edu	37	17	7404417	7404417	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	-	7404417	C	-	7404417	7	5	176	1	0	1	0	1	0	0	0	0	12221	842	30	0	2086	0	POLR2A	17	7404417	Frame_Shift_Del	DEL	C	TCGA-B0-5120-01A-01D-1421-08	5439609	7404417	73790793	46	11296											
ABCA10	10349	hgsc.bcm.edu;ucsc.edu	37	17	67186562	67186562	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	-	67186562	A	-	67186562	7	5	176	1	0	1	0	1	0	0	0	0	29	246	9	0	2651	0	ABCA10	17	67186562	Frame_Shift_Del	DEL	A	TCGA-B0-5120-01A-01D-1421-08	59782145	67186562	14008648	47	11297											
CD300E	342510	broad.mit.edu;hgsc.bcm.edu	37	17	72613604	72613604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	G	72613604	C	G	72613604	3	3	176	1	0	0	0	0	1	0	0	0	3000	753	26	4	588	4	CD300E	17	72613604	Missense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08	5427042	72613604	8581606	48	11298											
COLEC12	81035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	480713	480713	+	Silent	SNP	G	G	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	480713	G	T	480713	2	4	176	1	0	0	0	0	0	0	0	1	3714	1086	38	4		4	COLEC12	18	480713	Silent	SNP	G	TCGA-B0-5120-01A-01D-1421-08		480713	77596535	49	11299											
USHBP1	83878	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17366335	17366335	+	Silent	SNP	G	G	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	17366335	G	A	17366335	2	1	176	1	0	0	0	0	0	0	0	1	17049	1161	41	2		2	USHBP1	19	17366335	Silent	SNP	G	TCGA-B0-5120-01A-01D-1421-08		17366335	41762648	50	11300											
ZNF708	7562	broad.mit.edu;hgsc.bcm.edu	37	19	21492050	21492050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	21492050	G	A	21492050	3	1	176	1	0	0	0	0	1	0	0	0	18124	1348	47	2	1475	2	ZNF708	19	21492050	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08	4125715	21492050	37636933	51	11301											
CD22	933	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	35831892	35831892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	C	35831892	G	C	35831892	3	2	176	1	0	0	0	0	1	0	0	0	2987	1116	39	4	1380	4	CD22	19	35831892	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08	14339842	35831892	23297091	52	11302											
PIGP	51227	broad.mit.edu;ucsc.edu	37	21	38444809	38444809	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	38444809	A	A	38444809	4	1	176	1	0	0	0	0	0	1	0	0	11902	864	30	4	413	4	PIGP	21	38444809	Nonsense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08		38444809	9685086	53	11303											
CCDC157	550631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30766353	30766353	+	Silent	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	30766353	C	A	30766353	2	1	176	1	0	0	0	0	0	0	0	1	2791	581	21	4		4	CCDC157	22	30766353	Silent	SNP	C	TCGA-B0-5120-01A-01D-1421-08		30766353	20538213	54	11304											
SMCR7L	54471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	39908345	39908345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	39908345	G	A	39908345	3	1	176	1	0	0	0	0	1	0	0	0	14804	1116	39	1	441	1	SMCR7L	22	39908345	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08	9141992	39908345	11396221	55	11305											
ALG12	79087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50303615	50303615	+	Silent	SNP	C	C	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	50303615	C	T	50303615	2	4	176	1	0	0	0	0	0	0	0	1	514	581	21	2		2	ALG12	22	50303615	Silent	SNP	C	TCGA-B0-5120-01A-01D-1421-08	10395270	50303615	1000951	56	11306											
MAP3K15	389840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	19410163	19410163	+	Silent	SNP	C	C	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	19410163	C	T	19410163	2	4	176	1	0	0	0	0	0	0	0	1	9256	871	31	1		1	MAP3K15	23	19410163	Silent	SNP	C	TCGA-B0-5120-01A-01D-1421-08		19410163	135860397	57	11307											
SUV39H1	6839	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48557408	48557408	+	Silent	SNP	C	C	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	48557408	C	A	48557408	2	1	176	1	0	0	0	0	0	0	0	1	15424	871	31	4		4	SUV39H1	23	48557408	Silent	SNP	C	TCGA-B0-5120-01A-01D-1421-08	29147245	48557408	106713152	58	11308											
PFKFB1	5207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	54982603	54982603	+	Silent	SNP	C	C	T	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	T	54982603	C	T	54982603	2	4	176	1	0	0	0	0	0	0	0	1	11767	593	21	2		2	PFKFB1	23	54982603	Silent	SNP	C	TCGA-B0-5120-01A-01D-1421-08	6425195	54982603	100287957	59	11309											
TEX11	56159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	69942475	69942475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	69942475	G	A	69942475	3	1	176	1	0	0	0	0	1	0	0	0	15786	1290	45	2	1852	2	TEX11	23	69942475	Missense_Mutation	SNP	G	TCGA-B0-5120-01A-01D-1421-08	14959872	69942475	85328085	60	11310											
LRCH2	57631	broad.mit.edu	37	X	114400841	114400841	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-B0-5120-01A-01D-1421-08	TCGA-B0-5120-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6ce58fbc-6742-4ade-84b0-cd025266e030	b35280fe-dbfa-4e45-8f49-3d0489e68743	A	114400841	A	A	114400841	4	1	176	1	0	0	0	0	0	1	0	0	8940	922	32	4	1294	4	LRCH2	23	114400841	Nonsense_Mutation	SNP	C	TCGA-B0-5120-01A-01D-1421-08	44458366	114400841	40869719	61	11311											
KIAA0467	0	broad.mit.edu;hgsc.bcm.edu	37	1	43914130	43914130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	43914130	C	A	43914130	3	1	177	1	0	0	0	0	1	0	0	0	8185	855	30	4	7453	4	KIAA0467	1	43914130	Missense_Mutation	SNP	C	TCGA-B0-5121-01A-02D-1421-08		43914130	205336491	1	11312											
INADL	10207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62550236	62550236	+	Silent	SNP	C	C	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	62550236	C	T	62550236	2	4	177	1	0	0	0	0	0	0	0	1	7738	842	30	2		2	INADL	1	62550236	Silent	SNP	C	TCGA-B0-5121-01A-02D-1421-08	18636106	62550236	186700385	2	11313											
GPR89B	51463	hgsc.bcm.edu	37	1	147415632	147415632	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	-	147415632	A	-	147415632	7	5	177	1	0	1	0	1	0	0	0	0	6726	449	16	0	301	0	GPR89B	1	147415632	Frame_Shift_Del	DEL	A	TCGA-B0-5121-01A-02D-1421-08	84865396	147415632	101834989	3	11314											
C1orf25	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	185109279	185109279	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	185109279	G	C	185109279	3	2	177	1	0	0	0	0	1	0	0	0	2036	942	33	4	1298	4	C1orf25	1	185109279	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08	37693647	185109279	64141342	4	11315											
SLC41A1	254428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205767800	205767800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	205767800	G	T	205767800	3	4	177	1	0	0	0	0	1	0	0	0	14642	1020	36	4	724	4	SLC41A1	1	205767800	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08	20658521	205767800	43482821	5	11316											
ZNF692	55657	hgsc.bcm.edu;ucsc.edu	37	1	249150756	249150764	+	Frame_Shift_Del	DEL	CCAAATCTG	CCAAATCTG	-	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	CCAAATCTG	CCAAATCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	-	249150764	CCAAATCTG	-	249150756	7	5	177	1	0	1	0	1	0	0	0	0	18109	864	30	0	1110	0	ZNF692	1	249150756	Frame_Shift_Del	DEL	CCAAATCTG	TCGA-B0-5121-01A-02D-1421-08	43382956	249150756	99865	6	11317											
MYT1L	23040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1983506	1983506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	1983506	T	C	1983506	3	2	177	1	0	0	0	0	1	0	0	0	10114	1841	64	3	3590	3	MYT1L	2	1983506	Missense_Mutation	SNP	T	TCGA-B0-5121-01A-02D-1421-08		1983506	241215867	7	11318											
TSPYL6	388951	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	54482422	54482422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	54482422	C	A	54482422	3	1	177	1	0	0	0	0	1	0	0	0	16675	854	30	4	369	4	TSPYL6	2	54482422	Missense_Mutation	SNP	C	TCGA-B0-5121-01A-02D-1421-08	52498916	54482422	188716951	8	11319											
PCGF1	84759	broad.mit.edu	37	2	74732306	74732306	+	Silent	SNP	C	T	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	74732306	T	T	74732306	2	4	177	1	0	0	0	0	0	0	0	1	11581	709	25	2		2	PCGF1	2	74732306	Silent	SNP	C	TCGA-B0-5121-01A-02D-1421-08	20249884	74732306	168467067	9	11320											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47162787	47162787	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	47162787	A	C	47162787	4	2	177	1	0	0	0	0	0	1	0	0	14144	224	8	5	4431	5	SETD2	3	47162787	Nonsense_Mutation	SNP	A	TCGA-B0-5121-01A-02D-1421-08		47162787	150859643	10	11321											
GMPPB	29925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49760159	49760159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	49760159	T	C	49760159	3	2	177	1	0	0	0	0	1	0	0	0	6502	1638	57	3	748	3	GMPPB	3	49760159	Missense_Mutation	SNP	T	TCGA-B0-5121-01A-02D-1421-08	2597372	49760159	148262271	11	11322											
GPR171	29909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	150917098	150917098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	150917098	G	A	150917098	3	1	177	1	0	0	0	0	1	0	0	0	6675	1000	35	2	887	2	GPR171	3	150917098	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08	101156939	150917098	47105332	12	11323											
LRRC66	339977	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	52861345	52861345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	52861345	C	A	52861345	3	1	177	1	0	0	0	0	1	0	0	0	9025	855	30	4	803	4	LRRC66	4	52861345	Missense_Mutation	SNP	C	TCGA-B0-5121-01A-02D-1421-08		52861345	138292931	13	11324											
PDGFRA	5156	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	55156689	55156689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	55156689	G	T	55156689	3	4	177	1	0	0	0	0	1	0	0	0	11668	991	35	4	3172	4	PDGFRA	4	55156689	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08	2295344	55156689	135997587	14	11325	132	2									
PDGFRA	5156	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	55156690	55156690	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	55156690	G	T	55156690	4	4	177	1	0	0	0	0	0	1	0	0	11668	1175	41	4	3173	4	PDGFRA	4	55156690	Nonsense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08	1	55156690	135997586	15	11326	132	2									
ACSL6	23305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131289980	131289980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	131289980	G	T	131289980	3	4	177	1	0	0	0	0	1	0	0	0	181	962	34	4	56	4	ACSL6	5	131289980	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08		131289980	49625280	16	11327											
ZNF184	7738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27420988	27420988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	27420988	G	A	27420988	3	1	177	1	0	0	0	0	1	0	0	0	17763	942	33	2	1909	2	ZNF184	6	27420988	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08		27420988	143694079	17	11328											
TTBK1	84630	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43230690	43230690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	43230690	G	T	43230690	3	4	177	1	0	0	0	0	1	0	0	0	16688	1261	44	4	1634	4	TTBK1	6	43230690	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08	15809702	43230690	127884377	18	11329											
TAAR6	319100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	132892288	132892288	+	Silent	SNP	T	T	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	132892288	T	A	132892288	2	1	177	1	0	0	0	0	0	0	0	1	15504	1800	63	5		5	TAAR6	6	132892288	Silent	SNP	T	TCGA-B0-5121-01A-02D-1421-08	89661598	132892288	38222779	19	11330											
COL28A1	340267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	7398296	7398296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	G	7398296	T	G	7398296	3	3	177	1	0	0	0	0	1	0	0	0	3688	1850	64	5	35	5	COL28A1	7	7398296	Missense_Mutation	SNP	T	TCGA-B0-5121-01A-02D-1421-08		7398296	151740367	20	11331											
IGF2BP3	10643	broad.mit.edu;hgsc.bcm.edu	37	7	23508130	23508130	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	23508130	T	A	23508130	3	1	177	1	0	0	0	0	1	0	0	0	7582	1606	56	5	1588	5	IGF2BP3	7	23508130	Missense_Mutation	SNP	T	TCGA-B0-5121-01A-02D-1421-08	16109834	23508130	135630533	21	11332											
FOXP2	93986	broad.mit.edu	37	7	114269991	114269991	+	Silent	SNP	G	A	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	114269991	A	A	114269991	2	1	177	1	0	0	0	0	0	0	0	1	6034	962	34	2		2	FOXP2	7	114269991	Silent	SNP	G	TCGA-B0-5121-01A-02D-1421-08	90761861	114269991	44868672	22	11333											
NUP205	23165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	135277919	135277919	+	Silent	SNP	C	C	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	135277919	C	A	135277919	2	1	177	1	0	0	0	0	0	0	0	1	10766	813	29	4		4	NUP205	7	135277919	Silent	SNP	C	TCGA-B0-5121-01A-02D-1421-08	21007928	135277919	23860744	23	11334											
IKBKAP	8518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	111640376	111640376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	111640376	C	T	111640376	3	4	177	1	0	0	0	0	1	0	0	0	7617	690	24	2	256	2	IKBKAP	9	111640376	Missense_Mutation	SNP	C	TCGA-B0-5121-01A-02D-1421-08		111640376	29573055	24	11335											
CEP110	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123917154	123917154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	123917154	C	A	123917154	3	1	177	1	0	0	0	0	1	0	0	0	3247	710	25	4	4426	4	CEP110	9	123917154	Missense_Mutation	SNP	C	TCGA-B0-5121-01A-02D-1421-08	12276778	123917154	17296277	25	11336											
CARD9	64170	broad.mit.edu;ucsc.edu	37	9	139262211	139262211	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	G	139262211	G	G	139262211	3	3	177	1	0	0	0	0	1	0	0	0	2654	1821	63	5	540	5	CARD9	9	139262211	Missense_Mutation	SNP	T	TCGA-B0-5121-01A-02D-1421-08	15345057	139262211	1951220	26	11337											
OR9G4	283189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56510375	56510375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	G	56510375	A	G	56510375	3	3	177	1	0	0	0	0	1	0	0	0	11258	420	15	3	73	3	OR9G4	11	56510375	Missense_Mutation	SNP	A	TCGA-B0-5121-01A-02D-1421-08		56510375	78496141	27	11338											
OR4D9	390199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	59282457	59282457	+	Silent	SNP	C	C	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	59282457	C	T	59282457	2	4	177	1	0	0	0	0	0	0	0	1	11066	738	26	2		2	OR4D9	11	59282457	Silent	SNP	C	TCGA-B0-5121-01A-02D-1421-08	2772082	59282457	75724059	28	11339											
AHNAK	79026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62297275	62297275	+	Silent	SNP	G	G	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	62297275	G	A	62297275	2	1	177	1	0	0	0	0	0	0	0	1	414	1252	44	2		2	AHNAK	11	62297275	Silent	SNP	G	TCGA-B0-5121-01A-02D-1421-08	3014818	62297275	72709241	29	11340											
SLC3A2	6520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62652670	62652670	+	Silent	SNP	C	C	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	62652670	C	T	62652670	2	4	177	1	0	0	0	0	0	0	0	1	14640	564	20	2		2	SLC3A2	11	62652670	Silent	SNP	C	TCGA-B0-5121-01A-02D-1421-08	355395	62652670	72353846	30	11341											
PHLDB1	23187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118498567	118498567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	G	118498567	C	G	118498567	3	3	177	1	0	0	0	0	1	0	0	0	11858	739	26	4	1046	4	PHLDB1	11	118498567	Missense_Mutation	SNP	C	TCGA-B0-5121-01A-02D-1421-08	55845897	118498567	16507949	31	11342											
CHD4	1108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6690533	6690533	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	G	6690533	T	G	6690533	3	3	177	1	0	0	0	0	1	0	0	0	3329	1783	62	5	1071	5	CHD4	12	6690533	Missense_Mutation	SNP	T	TCGA-B0-5121-01A-02D-1421-08		6690533	127161362	32	11343											
BEST3	144453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	70087467	70087467	+	Silent	SNP	G	G	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	70087467	G	A	70087467	2	1	177	1	0	0	0	0	0	0	0	1	1406	1136	40	1		1	BEST3	12	70087467	Silent	SNP	G	TCGA-B0-5121-01A-02D-1421-08	63396934	70087467	63764428	33	11344											
TMTC2	160335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	83526102	83526102	+	Silent	SNP	A	A	G	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	G	83526102	A	G	83526102	2	3	177	1	0	0	0	0	0	0	0	1	16273	146	6	3		3	TMTC2	12	83526102	Silent	SNP	A	TCGA-B0-5121-01A-02D-1421-08	13438635	83526102	50325793	34	11345											
SLC5A8	160728	hgsc.bcm.edu	37	12	101560445	101560445	+	Silent	SNP	G	G	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	101560445	G	T	101560445	2	4	177	1	0	0	0	0	0	0	0	1	14684	1335	47	4		4	SLC5A8	12	101560445	Silent	SNP	G	TCGA-B0-5121-01A-02D-1421-08	18034343	101560445	32291450	35	11346											
TPTE2	93492	broad.mit.edu;hgsc.bcm.edu	37	13	20025322	20025322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	20025322	C	A	20025322	3	1	177	1	0	0	0	0	1	0	0	0	16443	884	31	4	823	4	TPTE2	13	20025322	Missense_Mutation	SNP	C	TCGA-B0-5121-01A-02D-1421-08		20025322	95144556	36	11347											
PABPC3	5042	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25670664	25670664	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	25670664	A	C	25670664	3	2	177	1	0	0	0	0	1	0	0	0	11372	217	8	5	330	5	PABPC3	13	25670664	Missense_Mutation	SNP	A	TCGA-B0-5121-01A-02D-1421-08	5645342	25670664	89499214	37	11348											
PDS5B	23047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33261392	33261392	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	33261392	A	C	33261392	3	2	177	1	0	0	0	0	1	0	0	0	11699	217	8	5	1367	5	PDS5B	13	33261392	Missense_Mutation	SNP	A	TCGA-B0-5121-01A-02D-1421-08	7590728	33261392	81908486	38	11349											
ABCC4	10257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	95830003	95830003	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	95830003	A	C	95830003	3	2	177	1	0	0	0	0	1	0	0	0	55	304	11	5	2417	5	ABCC4	13	95830003	Missense_Mutation	SNP	A	TCGA-B0-5121-01A-02D-1421-08	62568611	95830003	19339875	39	11350											
C14orf149	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	59942835	59942835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	G	59942835	T	G	59942835	3	3	177	1	0	0	0	0	1	0	0	0	1754	1725	60	5	300	5	C14orf149	14	59942835	Missense_Mutation	SNP	T	TCGA-B0-5121-01A-02D-1421-08		59942835	47406705	40	11351											
WDR72	256764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	54025233	54025233	+	Silent	SNP	C	C	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	54025233	C	T	54025233	2	4	177	1	0	0	0	0	0	0	0	1	17334	680	24	2		2	WDR72	15	54025233	Silent	SNP	C	TCGA-B0-5121-01A-02D-1421-08		54025233	48506159	41	11352											
BAIAP3	8938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1389514	1389514	+	Silent	SNP	G	G	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	1389514	G	A	1389514	2	1	177	1	0	0	0	0	0	0	0	1	1304	991	35	2		2	BAIAP3	16	1389514	Silent	SNP	G	TCGA-B0-5121-01A-02D-1421-08		1389514	88965239	42	11353											
KIAA0556	23247	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	27732992	27732992	+	Silent	SNP	T	T	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	27732992	T	C	27732992	2	2	177	1	0	0	0	0	0	0	0	1	8190	1770	62	3		3	KIAA0556	16	27732992	Silent	SNP	T	TCGA-B0-5121-01A-02D-1421-08	26343478	27732992	62621761	43	11354											
ADAMTS18	170692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	77327151	77327151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	77327151	G	A	77327151	3	1	177	1	0	0	0	0	1	0	0	0	263	1174	41	2	670	2	ADAMTS18	16	77327151	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08	49594159	77327151	13027602	44	11355											
SPATA22	84690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3370723	3370723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	3370723	T	C	3370723	3	2	177	1	0	0	0	0	1	0	0	0	15020	1638	57	3	950	3	SPATA22	17	3370723	Missense_Mutation	SNP	T	TCGA-B0-5121-01A-02D-1421-08		3370723	77824487	45	11356											
ZZEF1	23140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4017674	4017674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	4017674	G	A	4017674	3	1	177	1	0	0	0	0	1	0	0	0	18267	1059	37	1	8308	1	ZZEF1	17	4017674	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08	646951	4017674	77177536	46	11357											
CAMTA2	23125	hgsc.bcm.edu	37	17	4872070	4872071	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	G	4872071	-	G	4872070	7	5	177	1	0	1	1	0	0	0	0	0	2616	1580	55	0	72	0	CAMTA2	17	4872070	Frame_Shift_Ins	INS	-	TCGA-B0-5121-01A-02D-1421-08	854396	4872070	76323140	47	11358											
ABCA9	10350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	67023488	67023488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	67023488	T	C	67023488	3	2	177	1	0	0	0	0	1	0	0	0	39	1464	51	3	3084	3	ABCA9	17	67023488	Missense_Mutation	SNP	T	TCGA-B0-5121-01A-02D-1421-08	62151418	67023488	14171722	48	11359											
JMJD6	23210	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74719948	74719948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	T	74719948	A	T	74719948	3	4	177	1	0	0	0	0	1	0	0	0	7960	214	8	5	557	5	JMJD6	17	74719948	Missense_Mutation	SNP	A	TCGA-B0-5121-01A-02D-1421-08	7696460	74719948	6475262	49	11360											
DSC1	1823	broad.mit.edu	37	18	28720256	28720256	+	Silent	SNP	G	A	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	28720256	A	A	28720256	2	1	177	1	0	0	0	0	0	0	0	1	4767	1020	36	2		2	DSC1	18	28720256	Silent	SNP	G	TCGA-B0-5121-01A-02D-1421-08		28720256	49356992	50	11361											
ZNF430	80264	hgsc.bcm.edu	37	19	21216891	21216891	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	21216891	G	A	21216891	5	1	177	1	0	0	0	0	0	0	1	0	17916	985	34	2	237	2	ZNF430	19	21216891	Splice_Site	SNP	G	TCGA-B0-5121-01A-02D-1421-08		21216891	37912092	51	11362											
KRTAP13-1	140258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	31768847	31768847	+	Missense_Mutation	SNP	G	G	C	rs151147550	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	C	31768847	G	C	31768847	3	2	177	1	0	0	0	0	1	0	0	0	8529	1087	38	4	445	4	KRTAP13-1	21	31768847	Missense_Mutation	SNP	G	TCGA-B0-5121-01A-02D-1421-08		31768847	16361048	52	11363											
DGCR2	9993	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	19076918	19076918	+	Silent	SNP	C	C	A	novel		TCGA-B0-5121-01A-02D-1421-08	TCGA-B0-5121-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a2751cb2-8545-490c-92d9-edb9775d32b8	8020d022-9a26-4683-8cc0-7de39f5b1b38	A	19076918	C	A	19076918	2	1	177	1	0	0	0	0	0	0	0	1	4463	871	31	4		4	DGCR2	22	19076918	Silent	SNP	C	TCGA-B0-5121-01A-02D-1421-08		19076918	32227648	53	11364											
ACTL8	81569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	18149661	18149661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	C	18149661	T	C	18149661	3	2	178	1	0	0	0	0	1	0	0	0	202	1580	55	3	160	3	ACTL8	1	18149661	Missense_Mutation	SNP	T	TCGA-B0-5399-01A-01D-1501-10		18149661	231100960	1	11365											
COL11A1	1301	broad.mit.edu;ucsc.edu	37	1	103404625	103404625	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	103404625	T	T	103404625	3	4	178	1	0	0	0	0	1	0	0	0	3669	855	30	2	2112	2	COL11A1	1	103404625	Missense_Mutation	SNP	C	TCGA-B0-5399-01A-01D-1501-10	85254964	103404625	145845996	2	11366											
XCL1	6375	broad.mit.edu;hgsc.bcm.edu	37	1	168550370	168550370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	168550370	G	A	168550370	3	1	178	1	0	0	0	0	1	0	0	0	17435	1000	35	2	267	2	XCL1	1	168550370	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	65145745	168550370	80700251	3	11367	133	2									
XCL1	6375	broad.mit.edu;hgsc.bcm.edu	37	1	168550371	168550371	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	C	168550371	G	C	168550371	3	2	178	1	0	0	0	0	1	0	0	0	17435	1165	41	4	268	4	XCL1	1	168550371	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	1	168550371	80700250	4	11368	133	2									
FAM5C	339479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	190067353	190067353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	190067353	G	T	190067353	3	4	178	1	0	0	0	0	1	0	0	0	5601	1319	46	4	208	4	FAM5C	1	190067353	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	21516982	190067353	59183268	5	11369											
PTPN14	5784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	214549669	214549669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	214549669	C	T	214549669	3	4	178	1	0	0	0	0	1	0	0	0	12794	768	27	1	783	1	PTPN14	1	214549669	Missense_Mutation	SNP	C	TCGA-B0-5399-01A-01D-1501-10	24482316	214549669	34700952	6	11370											
CD207	50489	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	71060814	71060814	+	Silent	SNP	G	G	C	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	C	71060814	G	C	71060814	2	2	178	1	0	0	0	0	0	0	0	1	2985	1306	46	4		4	CD207	2	71060814	Silent	SNP	G	TCGA-B0-5399-01A-01D-1501-10		71060814	172138559	7	11371											
IL1F10	84639	hgsc.bcm.edu	37	2	113832829	113832829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	113832829	C	A	113832829	3	1	178	1	0	0	0	0	1	0	0	0	7659	739	26	4	361	4	IL1F10	2	113832829	Missense_Mutation	SNP	C	TCGA-B0-5399-01A-01D-1501-10	42772015	113832829	129366544	8	11372											
ASNSD1	54529	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	190532647	190532647	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	190532647	T	A	190532647	3	1	178	1	0	0	0	0	1	0	0	0	1049	1493	52	5	1628	5	ASNSD1	2	190532647	Missense_Mutation	SNP	T	TCGA-B0-5399-01A-01D-1501-10	76699818	190532647	52666726	9	11373											
STAT1	6772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	191864399	191864399	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	G	191864399	T	G	191864399	3	3	178	1	0	0	0	0	1	0	0	0	15276	1435	50	5	1838	5	STAT1	2	191864399	Missense_Mutation	SNP	T	TCGA-B0-5399-01A-01D-1501-10	1331752	191864399	51334974	10	11374											
SETD2	29072	broad.mit.edu	37	3	47127737	47127737	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	47127737	T	T	47127737	4	4	178	1	0	0	0	0	0	1	0	0	14144	595	21	2	2393	2	SETD2	3	47127737	Nonsense_Mutation	SNP	C	TCGA-B0-5399-01A-01D-1501-10		47127737	150894693	11	11375											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47164613	47164613	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	47164613	C	A	47164613	4	1	178	1	0	0	0	0	0	1	0	0	14144	864	30	4	6257	4	SETD2	3	47164613	Nonsense_Mutation	SNP	C	TCGA-B0-5399-01A-01D-1501-10	36876	47164613	150857817	12	11376											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52668817	52668817	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	52668817	C	A	52668817	4	1	178	1	0	0	0	0	0	1	0	0	11498	922	32	4	3878	4	PBRM1	3	52668817	Nonsense_Mutation	SNP	C	TCGA-B0-5399-01A-01D-1501-10	5504204	52668817	145353613	13	11377											
ATP13A5	344905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	193052840	193052840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	C	193052840	G	C	193052840	3	2	178	1	0	0	0	0	1	0	0	0	1127	1029	36	4	2746	4	ATP13A5	3	193052840	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	140384023	193052840	4969590	14	11378											
C5orf44	80006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	64960063	64960063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	64960063	G	A	64960063	3	1	178	1	0	0	0	0	1	0	0	0	2305	1043	36	2	1047	2	C5orf44	5	64960063	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10		64960063	115955197	15	11379	134	2									
C5orf44	80006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	64960070	64960070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	64960070	G	T	64960070	3	4	178	1	0	0	0	0	1	0	0	0	2305	1165	41	4	1054	4	C5orf44	5	64960070	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	7	64960070	115955190	16	11380	134	2									
PCYOX1L	78991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	148742273	148742273	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	C	148742273	G	C	148742273	3	2	178	1	0	0	0	0	1	0	0	0	11616	933	33	4	168	4	PCYOX1L	5	148742273	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	83782203	148742273	32172987	17	11381											
ARSI	340075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149677720	149677720	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	-	149677720	C	-	149677720	7	5	178	1	0	1	0	1	0	0	0	0	994	739	26	0	946	0	ARSI	5	149677720	Frame_Shift_Del	DEL	C	TCGA-B0-5399-01A-01D-1501-10	935447	149677720	31237540	18	11382											
FGFR4	2264	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176520705	176520705	+	Missense_Mutation	SNP	G	G	T	rs141384037	alternate_allele	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	176520705	G	T	176520705	3	4	178	1	0	0	0	0	1	0	0	0	5875	1145	40	4	1556	4	FGFR4	5	176520705	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	26842985	176520705	4394555	19	11383											
ROS1	6098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	117647553	117647553	+	Silent	SNP	C	C	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	117647553	C	T	117647553	2	4	178	1	0	0	0	0	0	0	0	1	13544	912	32	2		2	ROS1	6	117647553	Silent	SNP	C	TCGA-B0-5399-01A-01D-1501-10		117647553	53467514	20	11384											
SAMD5	389432	broad.mit.edu	37	6	147830411	147830411	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	-	147830411	-	-	147830411	7	5	178	1	0	1	0	1	0	0	0	0	13836	739	26	0	349	0	SAMD5	6	147830411	Frame_Shift_Del	DEL	C	TCGA-B0-5399-01A-01D-1501-10	30182858	147830411	23284656	21	11385											
ULBP2	80328	broad.mit.edu;hgsc.bcm.edu	37	6	150267506	150267506	+	Splice_Site	SNP	A	A	G	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	G	150267506	A	G	150267506	5	3	178	1	0	0	0	0	0	0	1	0	16985	202	7	3	358	3	ULBP2	6	150267506	Splice_Site	SNP	A	TCGA-B0-5399-01A-01D-1501-10	2437095	150267506	20847561	22	11386											
NOL8	55035	hgsc.bcm.edu;ucsc.edu	37	9	95070141	95070141	+	RNA	SNP	G	G	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	95070141	G	A	95070141	1	1	178	0	1	0	0	0	0	0	0	0	10534	1189	41	2		2	NOL8	9	95070141	RNA	SNP	G	TCGA-B0-5399-01A-01D-1501-10		95070141	46143290	23	11387											
DIP2C	22982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	375379	375379	+	Silent	SNP	G	G	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	375379	G	T	375379	2	4	178	1	0	0	0	0	0	0	0	1	4531	1219	43	4		4	DIP2C	10	375379	Silent	SNP	G	TCGA-B0-5399-01A-01D-1501-10		375379	135159368	24	11388											
TAF5	6877	broad.mit.edu;hgsc.bcm.edu	37	10	105139365	105139365	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	C	105139365	G	C	105139365	3	2	178	1	0	0	0	0	1	0	0	0	15540	1275	44	4	1128	4	TAF5	10	105139365	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	104763986	105139365	30395382	25	11389											
OR52J3	119679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5068523	5068523	+	Silent	SNP	A	A	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	5068523	A	T	5068523	2	4	178	1	0	0	0	0	0	0	0	1	11129	175	7	5		5	OR52J3	11	5068523	Silent	SNP	A	TCGA-B0-5399-01A-01D-1501-10		5068523	129937993	26	11390											
IGSF22	283284	broad.mit.edu	37	11	18738394	18738394	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	18738394	T	T	18738394	3	4	178	1	0	0	0	0	1	0	0	0	7607	1145	40	4	2909	4	IGSF22	11	18738394	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	13669871	18738394	116268122	27	11391											
SYVN1	84447	hgsc.bcm.edu	37	11	64897535	64897536	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	C	64897536	-	C	64897535	7	5	178	1	0	1	1	0	0	0	0	0	15499	1190	42	0	522	0	SYVN1	11	64897535	Frame_Shift_Ins	INS	-	TCGA-B0-5399-01A-01D-1501-10	46159141	64897535	70108981	28	11392											
FZD4	8322	hgsc.bcm.edu;ucsc.edu	37	11	86663464	86663464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	C	86663464	T	C	86663464	3	2	178	1	0	0	0	0	1	0	0	0	6139	1464	51	3	1283	3	FZD4	11	86663464	Missense_Mutation	SNP	T	TCGA-B0-5399-01A-01D-1501-10	21765929	86663464	48343052	29	11393											
B4GALNT3	283358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	657232	657232	+	Silent	SNP	G	G	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	657232	G	A	657232	2	1	178	1	0	0	0	0	0	0	0	1	1268	962	34	2		2	B4GALNT3	12	657232	Silent	SNP	G	TCGA-B0-5399-01A-01D-1501-10		657232	133194663	30	11394											
CLEC4C	170482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7890118	7890118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	7890118	A	T	7890118	3	4	178	1	0	0	0	0	1	0	0	0	3515	359	13	5	365	5	CLEC4C	12	7890118	Missense_Mutation	SNP	A	TCGA-B0-5399-01A-01D-1501-10	7232886	7890118	125961777	31	11395											
ABCC9	10060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	22068794	22068794	+	Silent	SNP	G	G	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	22068794	G	T	22068794	2	4	178	1	0	0	0	0	0	0	0	1	59	1161	41	4		4	ABCC9	12	22068794	Silent	SNP	G	TCGA-B0-5399-01A-01D-1501-10	14178676	22068794	111783101	32	11396											
ALDH2	217	broad.mit.edu;hgsc.bcm.edu	37	12	112221085	112221085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	112221085	G	A	112221085	3	1	178	1	0	0	0	0	1	0	0	0	496	1174	41	2	353	2	ALDH2	12	112221085	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	90152291	112221085	21630810	33	11397											
GCN1L1	10985	broad.mit.edu;ucsc.edu	37	12	120574466	120574466	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	120574466	A	A	120574466	3	1	178	1	0	0	0	0	1	0	0	0	6306	1319	46	2	1199	2	GCN1L1	12	120574466	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	8353381	120574466	13277429	34	11398											
PDS5B	23047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33275559	33275559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	33275559	G	A	33275559	3	1	178	1	0	0	0	0	1	0	0	0	11699	942	33	2	1902	2	PDS5B	13	33275559	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10		33275559	81894319	35	11399											
IFI27L2	83982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94594972	94594972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	94594972	C	A	94594972	3	1	178	1	0	0	0	0	1	0	0	0	7521	594	21	4	322	4	IFI27L2	14	94594972	Missense_Mutation	SNP	C	TCGA-B0-5399-01A-01D-1501-10		94594972	12754568	36	11400											
TLN2	83660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	62978977	62978977	+	Silent	SNP	A	A	G	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	G	62978977	A	G	62978977	2	3	178	1	0	0	0	0	0	0	0	1	15960	146	6	3		3	TLN2	15	62978977	Silent	SNP	A	TCGA-B0-5399-01A-01D-1501-10		62978977	39552415	37	11401											
SETD6	79918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58550759	58550759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	G	58550759	C	G	58550759	3	3	178	1	0	0	0	0	1	0	0	0	14148	855	30	4	737	4	SETD6	16	58550759	Missense_Mutation	SNP	C	TCGA-B0-5399-01A-01D-1501-10		58550759	31803994	38	11402											
MEX3C	51320	hgsc.bcm.edu;ucsc.edu	37	18	48703023	48703023	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	-	48703023	C	-	48703023	7	5	178	1	0	1	0	1	0	0	0	0	9518	507	18	0	305	0	MEX3C	18	48703023	Frame_Shift_Del	DEL	C	TCGA-B0-5399-01A-01D-1501-10		48703023	29374225	39	11403											
FBN3	84467	hgsc.bcm.edu;ucsc.edu	37	19	8148162	8148162	+	Silent	SNP	G	G	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	8148162	G	A	8148162	2	1	178	1	0	0	0	0	0	0	0	1	5711	1372	48	2		2	FBN3	19	8148162	Silent	SNP	G	TCGA-B0-5399-01A-01D-1501-10		8148162	50980821	40	11404											
BCAM	4059	broad.mit.edu;hgsc.bcm.edu	37	19	45324077	45324077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	45324077	G	A	45324077	3	1	178	1	0	0	0	0	1	0	0	0	1344	1059	37	1	1937	1	BCAM	19	45324077	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	37175915	45324077	13804906	41	11405											
ADAM33	80332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3655259	3655259	+	Silent	SNP	G	G	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	3655259	G	A	3655259	2	1	178	1	0	0	0	0	0	0	0	1	250	1136	40	1		1	ADAM33	20	3655259	Silent	SNP	G	TCGA-B0-5399-01A-01D-1501-10		3655259	59370261	42	11406											
CABIN1	23523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24563174	24563174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	24563174	C	A	24563174	3	1	178	1	0	0	0	0	1	0	0	0	2530	565	20	4	5697	4	CABIN1	22	24563174	Missense_Mutation	SNP	C	TCGA-B0-5399-01A-01D-1501-10		24563174	26741392	43	11407											
SGSM3	27352	hgsc.bcm.edu	37	22	40804077	40804078	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	G	40804078	-	G	40804077	7	5	178	1	0	1	1	0	0	0	0	0	14237	1580	55	0	1636	0	SGSM3	22	40804077	Frame_Shift_Ins	INS	-	TCGA-B0-5399-01A-01D-1501-10	16240903	40804077	10500489	44	11408											
PDK3	5165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	24537120	24537120	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	C	24537120	A	C	24537120	3	2	178	1	0	0	0	0	1	0	0	0	11684	98	4	5	688	5	PDK3	23	24537120	Missense_Mutation	SNP	A	TCGA-B0-5399-01A-01D-1501-10		24537120	130733440	45	11409											
PGK1	5230	broad.mit.edu;hgsc.bcm.edu	37	X	77373615	77373615	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	A	77373615	T	A	77373615	3	1	178	1	0	0	0	0	1	0	0	0	11797	1609	56	5	611	5	PGK1	23	77373615	Missense_Mutation	SNP	T	TCGA-B0-5399-01A-01D-1501-10	52836495	77373615	77896945	46	11410											
KCNE1L	23630	broad.mit.edu	37	X	108868069	108868069	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0961a0cf-cc48-4648-899a-6bae189713be	ccca4bdb-ecc3-478a-ab84-47822fc05435	T	108868069	T	T	108868069	3	4	178	1	0	0	0	0	1	0	0	0	8029	942	33	4	251	4	KCNE1L	23	108868069	Missense_Mutation	SNP	G	TCGA-B0-5399-01A-01D-1501-10	31494454	108868069	46402491	47	11411											
VHL	7428	hgsc.bcm.edu	37	3	10183864	10183864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5399-01A-01W-1528-10	TCGA-B0-5399-10A-01D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	83a76d98-c12a-4fe5-b3a3-9d74a3ae5179	ccca4bdb-ecc3-478a-ab84-47822fc05435	G	10183864	C	G	10183864	3	3	179	1	0	0	0	0	1	0	0	0	17174	796	28	4	335	4	VHL	3	10183864	Missense_Mutation	SNP	C	TCGA-B0-5399-01A-01W-1528-10		10183864	187838566	1	11412											
OTUD3	23252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	20233088	20233088	+	Silent	SNP	A	A	G	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	G	20233088	A	G	20233088	2	3	180	1	0	0	0	0	0	0	0	1	11320	117	5	3		3	OTUD3	1	20233088	Silent	SNP	A	TCGA-B0-5400-01A-01D-1501-10		20233088	229017533	1	11413											
RPL5	6125	broad.mit.edu;ucsc.edu	37	1	93307322	93307322	+	Splice_Site	SNP	G	C	C	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	93307322	C	C	93307322	5	2	180	1	0	0	0	0	0	0	1	0	13610	1014	35	4	824	4	RPL5	1	93307322	Splice_Site	SNP	G	TCGA-B0-5400-01A-01D-1501-10	73074234	93307322	155943299	2	11414											
SHC1	6464	broad.mit.edu;ucsc.edu	37	1	154941261	154941261	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	G	154941261	G	G	154941261	3	3	180	1	0	0	0	0	1	0	0	0	14283	1667	58	5	1178	5	SHC1	1	154941261	Missense_Mutation	SNP	T	TCGA-B0-5400-01A-01D-1501-10	61633939	154941261	94309360	3	11415											
LEMD1	93273	broad.mit.edu	37	1	205350814	205350814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	205350814	T	T	205350814	3	4	180	1	0	0	0	0	1	0	0	0	8726	1044	36	4		4	LEMD1	1	205350814	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10	50409553	205350814	43899807	4	11416											
TARBP1	6894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	234599596	234599596	+	Silent	SNP	T	T	C	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	234599596	T	C	234599596	2	2	180	1	0	0	0	0	0	0	0	1	15567	1567	55	3		3	TARBP1	1	234599596	Silent	SNP	T	TCGA-B0-5400-01A-01D-1501-10	29248782	234599596	14651025	5	11417											
PSD4	23550	hgsc.bcm.edu;ucsc.edu	37	2	113943717	113943717	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	-	113943717	A	-	113943717	7	5	180	1	0	1	0	1	0	0	0	0	12659	247	9	0	1527	0	PSD4	2	113943717	Frame_Shift_Del	DEL	A	TCGA-B0-5400-01A-01D-1501-10		113943717	129255656	6	11418											
IWS1	55677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128263302	128263302	+	Silent	SNP	G	G	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	128263302	G	T	128263302	2	4	180	1	0	0	0	0	0	0	0	1	7938	1190	42	4		4	IWS1	2	128263302	Silent	SNP	G	TCGA-B0-5400-01A-01D-1501-10	14319585	128263302	114936071	7	11419											
GPR39	2863	broad.mit.edu	37	2	133175094	133175094	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	133175094	A	A	133175094	4	1	180	1	0	0	0	0	0	1	0	0	6700	1357	47	2	481	2	GPR39	2	133175094	Nonsense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10	4911792	133175094	110024279	8	11420											
MFSD6	54842	hgsc.bcm.edu;ucsc.edu	37	2	191334581	191334581	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	191334581	G	T	191334581	4	4	180	1	0	0	0	0	0	1	0	0	9542	1014	35	4	1636	4	MFSD6	2	191334581	Nonsense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10	58159487	191334581	51864792	9	11421											
SLC4A7	9497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	27442256	27442256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	27442256	G	A	27442256	3	1	180	1	0	0	0	0	1	0	0	0	14671	956	33	2	1285	2	SLC4A7	3	27442256	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10		27442256	170580174	10	11422											
ALAS1	211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52246387	52246387	+	Silent	SNP	G	G	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	52246387	G	A	52246387	2	1	180	1	0	0	0	0	0	0	0	1	484	1161	41	2		2	ALAS1	3	52246387	Silent	SNP	G	TCGA-B0-5400-01A-01D-1501-10	24804131	52246387	145776043	11	11423											
FBXW7	55294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	153244135	153244135	+	Silent	SNP	C	C	G	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	G	153244135	C	G	153244135	2	3	180	1	0	0	0	0	0	0	0	1	5776	842	30	4		4	FBXW7	4	153244135	Silent	SNP	C	TCGA-B0-5400-01A-01D-1501-10		153244135	37910141	12	11424											
SNX25	83891	broad.mit.edu;ucsc.edu	37	4	186283245	186283245	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	186283245	C	C	186283245	3	2	180	1	0	0	0	0	1	0	0	0	14909	1609	56	3	2389	3	SNX25	4	186283245	Missense_Mutation	SNP	T	TCGA-B0-5400-01A-01D-1501-10	33039110	186283245	4871031	13	11425											
SEMA3E	9723	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82996992	82996992	+	Silent	SNP	G	G	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	82996992	G	A	82996992	2	1	180	1	0	0	0	0	0	0	0	1	14041	987	35	2		2	SEMA3E	7	82996992	Silent	SNP	G	TCGA-B0-5400-01A-01D-1501-10		82996992	76141671	14	11426											
NRCAM	4897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107820706	107820706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	107820706	G	A	107820706	3	1	180	1	0	0	0	0	1	0	0	0	10651	1232	43	2	1168	2	NRCAM	7	107820706	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10	24823714	107820706	51317957	15	11427											
EPB41L4B	54566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	111976002	111976002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	111976002	G	T	111976002	3	4	180	1	0	0	0	0	1	0	0	0	5158	1000	35	4	1012	4	EPB41L4B	9	111976002	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10		111976002	29237429	16	11428											
CUL2	8453	broad.mit.edu;ucsc.edu	37	10	35299283	35299283	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	35299283	T	T	35299283	3	4	180	1	0	0	0	0	1	0	0	0	4057	922	32	2	47	2	CUL2	10	35299283	Missense_Mutation	SNP	C	TCGA-B0-5400-01A-01D-1501-10		35299283	100235464	17	11429											
LRRC18	474354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	50121787	50121787	+	Silent	SNP	G	G	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	50121787	G	A	50121787	2	1	180	1	0	0	0	0	0	0	0	1	8981	1335	47	2		2	LRRC18	10	50121787	Silent	SNP	G	TCGA-B0-5400-01A-01D-1501-10	14822504	50121787	85412960	18	11430											
LRRTM3	347731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	68688186	68688186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	68688186	C	A	68688186	3	1	180	1	0	0	0	0	1	0	0	0	9048	477	17	4	1518	4	LRRTM3	10	68688186	Missense_Mutation	SNP	C	TCGA-B0-5400-01A-01D-1501-10	18566399	68688186	66846561	19	11431											
CH25H	9023	broad.mit.edu;ucsc.edu	37	10	90966990	90966990	+	Silent	SNP	C	T	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	90966990	T	T	90966990	2	4	180	1	0	0	0	0	0	0	0	1	3309	697	25	2		2	CH25H	10	90966990	Silent	SNP	C	TCGA-B0-5400-01A-01D-1501-10	22278804	90966990	44567757	20	11432											
SFXN4	119559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	120921912	120921912	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	120921912	G	C	120921912	3	2	180	1	0	0	0	0	1	0	0	0	14210	1020	36	4	869	4	SFXN4	10	120921912	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10	29954922	120921912	14612835	21	11433											
TTC17	55761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	43469635	43469635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	43469635	G	A	43469635	3	1	180	1	0	0	0	0	1	0	0	0	16696	1145	40	1	2823	1	TTC17	11	43469635	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10		43469635	91536881	22	11434											
TAS2R46	259292	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	11214646	11214646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	11214646	G	T	11214646	3	4	180	1	0	0	0	0	1	0	0	0	15594	1029	36	4	685	4	TAS2R46	12	11214646	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10		11214646	122637249	23	11435											
PIK3C2G	5288	broad.mit.edu;ucsc.edu	37	12	18649023	18649023	+	Silent	SNP	T	C	C	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	18649023	C	C	18649023	2	2	180	1	0	0	0	0	0	0	0	1	11918	1838	64	3		3	PIK3C2G	12	18649023	Silent	SNP	T	TCGA-B0-5400-01A-01D-1501-10	7434377	18649023	115202872	24	11436											
KRAS	3845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	25380282	25380282	+	Missense_Mutation	SNP	G	G	C	rs104886029	alternate_allele	TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	25380282	G	C	25380282	3	2	180	1	0	0	0	0	1	0	0	0	8445	1319	46	4	526	4	KRAS	12	25380282	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10	6731259	25380282	108471613	25	11437											
LIMA1	51474	broad.mit.edu;ucsc.edu	37	12	50616129	50616129	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	50616129	A	A	50616129	3	1	180	1	0	0	0	0	1	0	0	0	8803	1667	58	5	2009	5	LIMA1	12	50616129	Missense_Mutation	SNP	T	TCGA-B0-5400-01A-01D-1501-10	25235847	50616129	83235766	26	11438											
ATP8A2	51761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	26148985	26148985	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	26148985	G	T	26148985	4	4	180	1	0	0	0	0	0	1	0	0	1193	1175	41	4	1776	4	ATP8A2	13	26148985	Nonsense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10		26148985	89020893	27	11439											
SEC11A	23478	broad.mit.edu;ucsc.edu	37	15	85230906	85230906	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	85230906	C	C	85230906	3	2	180	1	0	0	0	0	1	0	0	0	13991	1512	53	3	294	3	SEC11A	15	85230906	Missense_Mutation	SNP	T	TCGA-B0-5400-01A-01D-1501-10		85230906	17300486	28	11440											
GOT2	2806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58743325	58743325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	58743325	T	C	58743325	3	2	180	1	0	0	0	0	1	0	0	0	6588	1783	62	3	134	3	GOT2	16	58743325	Missense_Mutation	SNP	T	TCGA-B0-5400-01A-01D-1501-10		58743325	31611428	29	11441											
DLG4	1742	broad.mit.edu	37	17	7111517	7111517	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	7111517	T	T	7111517	3	4	180	1	0	0	0	0	1	0	0	0	4559	1368	48	4	2178	4	DLG4	17	7111517	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10		7111517	74083693	30	11442											
CHD3	1107	broad.mit.edu;hgsc.bcm.edu	37	17	7801818	7801818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	7801818	C	A	7801818	3	1	180	1	0	0	0	0	1	0	0	0	3328	564	20	4	2387	4	CHD3	17	7801818	Missense_Mutation	SNP	C	TCGA-B0-5400-01A-01D-1501-10	690301	7801818	73393392	31	11443											
KRT32	3882	broad.mit.edu;hgsc.bcm.edu	37	17	39619147	39619147	+	Silent	SNP	G	G	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	39619147	G	A	39619147	2	1	180	1	0	0	0	0	0	0	0	1	8475	1136	40	1		1	KRT32	17	39619147	Silent	SNP	G	TCGA-B0-5400-01A-01D-1501-10	31817329	39619147	41576063	32	11444											
DNAJC7	7266	broad.mit.edu;ucsc.edu	37	17	40148366	40148366	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	G	40148366	G	G	40148366	3	3	180	1	0	0	0	0	1	0	0	0	4656	420	15	3	1160	3	DNAJC7	17	40148366	Missense_Mutation	SNP	A	TCGA-B0-5400-01A-01D-1501-10	529219	40148366	41046844	33	11445											
PIGN	23556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	59815498	59815498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	G	59815498	A	G	59815498	3	3	180	1	0	0	0	0	1	0	0	0	11900	372	13	3	2268	3	PIGN	18	59815498	Missense_Mutation	SNP	A	TCGA-B0-5400-01A-01D-1501-10		59815498	18261750	34	11446											
PAPL	390928	broad.mit.edu	37	19	39591391	39591391	+	Silent	SNP	T	G	G	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	G	39591391	G	G	39591391	2	3	180	1	0	0	0	0	0	0	0	1	11434	1654	58	5		5	PAPL	19	39591391	Silent	SNP	T	TCGA-B0-5400-01A-01D-1501-10		39591391	19537592	35	11447											
LILRB5	10990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54760570	54760570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	54760570	G	A	54760570	3	1	180	1	0	0	0	0	1	0	0	0	8801	1261	44	2	1682	2	LILRB5	19	54760570	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10	15169179	54760570	4368413	36	11448											
NLRP9	338321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56243438	56243438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	56243438	G	A	56243438	3	1	180	1	0	0	0	0	1	0	0	0	10491	1319	46	2	1248	2	NLRP9	19	56243438	Missense_Mutation	SNP	G	TCGA-B0-5400-01A-01D-1501-10	1482868	56243438	2885545	37	11449											
CLIC6	54102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	36081084	36081084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	T	36081084	C	T	36081084	3	4	180	1	0	0	0	0	1	0	0	0	3532	536	19	1	1711	1	CLIC6	21	36081084	Missense_Mutation	SNP	C	TCGA-B0-5400-01A-01D-1501-10		36081084	12048811	38	11450											
LOC391322	391322	broad.mit.edu;ucsc.edu	37	22	24373819	24373819	+	Silent	SNP	T	C	C	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	24373819	C	C	24373819	2	2	180	1	0	0	0	0	0	0	0	1	8882	1509	53	3		3	LOC391322	22	24373819	Silent	SNP	T	TCGA-B0-5400-01A-01D-1501-10		24373819	26930747	39	11451											
FRMPD4	9758	broad.mit.edu;ucsc.edu	37	X	12736620	12736620	+	Silent	SNP	C	A	A	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	A	12736620	A	A	12736620	2	1	180	1	0	0	0	0	0	0	0	1	6066	697	25	4		4	FRMPD4	23	12736620	Silent	SNP	C	TCGA-B0-5400-01A-01D-1501-10		12736620	142533940	40	11452											
PHF8	23133	broad.mit.edu;ucsc.edu	37	X	54043171	54043171	+	Splice_Site	SNP	T	C	C	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	C	54043171	C	C	54043171	5	2	180	1	0	0	0	0	0	0	1	0	11847	1594	55	3	2859	3	PHF8	23	54043171	Splice_Site	SNP	T	TCGA-B0-5400-01A-01D-1501-10	41306551	54043171	101227389	41	11453											
ODZ1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	123630881	123630881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5400-01A-01D-1501-10	TCGA-B0-5400-11A-01D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e7128330-77b1-48be-b9f0-be986aa63ea8	c580da30-e65c-4abb-9903-3749bde02be4	G	123630881	C	G	123630881	3	3	180	1	0	0	0	0	1	0	0	0	10841	565	20	4	4570	4	ODZ1	23	123630881	Missense_Mutation	SNP	C	TCGA-B0-5400-01A-01D-1501-10	69587710	123630881	31639679	42	11454											
JAK1	3716	hgsc.bcm.edu;ucsc.edu	37	1	65330477	65330479	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	-	65330479	TTG	-	65330477	7	5	181	1	0	1	0	1	0	0	0	0	7944	1609	56	0	2367	0	JAK1	1	65330477	In_Frame_Del	DEL	TTG	TCGA-B0-5402-01A-01D-1501-10		65330477	183920144	1	11455											
C1orf103	0	hgsc.bcm.edu;ucsc.edu	37	1	111490650	111490652	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	-	111490652	TCT	-	111490650	7	5	181	1	0	1	0	1	0	0	0	0	1979	1664	58	0	72	0	C1orf103	1	111490650	In_Frame_Del	DEL	TCT	TCGA-B0-5402-01A-01D-1501-10	46160173	111490650	137759971	2	11456											
MAP4K4	9448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	102460601	102460601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	102460601	G	A	102460601	3	1	181	1	0	0	0	0	1	0	0	0	9269	1058	37	1	1107	1	MAP4K4	2	102460601	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10		102460601	140738772	3	11457											
TMEM37	140738	broad.mit.edu	37	2	120194742	120194742	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	C	120194742	C	C	120194742	3	2	181	1	0	0	0	0	1	0	0	0	16170	1696	59	3	305	3	TMEM37	2	120194742	Missense_Mutation	SNP	T	TCGA-B0-5402-01A-01D-1501-10	17734141	120194742	123004631	4	11458											
ZRANB3	84083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	135966529	135966529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	G	135966529	C	G	135966529	3	3	181	1	0	0	0	0	1	0	0	0	18236	478	17	4	740	4	ZRANB3	2	135966529	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	15771787	135966529	107232844	5	11459											
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238277320	238277320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	238277320	C	T	238277320	3	4	181	1	0	0	0	0	1	0	0	0	3703	565	20	2	4887	2	COL6A3	2	238277320	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	102310791	238277320	4922053	6	11460											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191572	10191572	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	10191572	G	T	10191572	4	4	181	1	0	0	0	0	0	1	0	0	17174	1175	41	4	575	4	VHL	3	10191572	Nonsense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10		10191572	187830858	7	11461											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47164342	47164343	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	GA	GA	GA	-	GA	GA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	-	47164343	GA	-	47164342	7	5	181	1	0	1	0	1	0	0	0	0	14144	1294	45	0	5986	0	SETD2	3	47164342	Frame_Shift_Del	DEL	GA	TCGA-B0-5402-01A-01D-1501-10	36972770	47164342	150858088	8	11462											
IP6K1	9807	broad.mit.edu;ucsc.edu	37	3	49775709	49775709	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	49775709	A	A	49775709	3	1	181	1	0	0	0	0	1	0	0	0	7795	1115	39	1	971	1	IP6K1	3	49775709	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	2611367	49775709	148246721	9	11463											
CHMP2B	25978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	87302584	87302584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	87302584	G	A	87302584	3	1	181	1	0	0	0	0	1	0	0	0	3357	1261	44	2	473	2	CHMP2B	3	87302584	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	37526875	87302584	110719846	10	11464											
FAM194A	131831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	150384662	150384662	+	Missense_Mutation	SNP	C	C	A	rs150155678	alternate_allele	TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	150384662	C	A	150384662	3	1	181	1	0	0	0	0	1	0	0	0	5530	855	30	4	359	4	FAM194A	3	150384662	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	63082078	150384662	47637768	11	11465											
RARRES1	5918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	158415529	158415529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	G	158415529	C	G	158415529	3	3	181	1	0	0	0	0	1	0	0	0	13068	922	32	4	65	4	RARRES1	3	158415529	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	8030867	158415529	39606901	12	11466											
NHEDC2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	103988700	103988700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	C	103988700	T	C	103988700	3	2	181	1	0	0	0	0	1	0	0	0	10408	1435	50	3	1649	3	NHEDC2	4	103988700	Missense_Mutation	SNP	T	TCGA-B0-5402-01A-01D-1501-10		103988700	87165576	13	11467											
ADAM29	11086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	175896768	175896768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	175896768	C	T	175896768	3	4	181	1	0	0	0	0	1	0	0	0	247	652	23	1	94	1	ADAM29	4	175896768	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	71908068	175896768	15257508	14	11468											
FASTKD3	79072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	7867988	7867988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	7867988	C	T	7867988	3	4	181	1	0	0	0	0	1	0	0	0	5694	855	30	2	1803	2	FASTKD3	5	7867988	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10		7867988	173047272	15	11469											
PDZD2	23037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32088407	32088407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	32088407	C	A	32088407	3	1	181	1	0	0	0	0	1	0	0	0	11708	623	22	4	4927	4	PDZD2	5	32088407	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	24220419	32088407	148826853	16	11470											
HCN1	348980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	45262590	45262590	+	Silent	SNP	C	C	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	45262590	C	T	45262590	2	4	181	1	0	0	0	0	0	0	0	1	7003	639	23	1		1	HCN1	5	45262590	Silent	SNP	C	TCGA-B0-5402-01A-01D-1501-10	13174183	45262590	135652670	17	11471											
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127664442	127664442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	127664442	G	A	127664442	3	1	181	1	0	0	0	0	1	0	0	0	5710	1058	37	1	4449	1	FBN2	5	127664442	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	82401852	127664442	53250818	18	11472											
PCDHB6	56130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140530050	140530050	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	C	140530050	G	C	140530050	3	2	181	1	0	0	0	0	1	0	0	0	11553	942	33	4	214	4	PCDHB6	5	140530050	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	12865608	140530050	40385210	19	11473											
DPYSL3	1809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	146798117	146798117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	146798117	C	A	146798117	3	1	181	1	0	0	0	0	1	0	0	0	4750	739	26	4	1554	4	DPYSL3	5	146798117	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	6268067	146798117	34117143	20	11474											
PTK7	5754	broad.mit.edu	37	6	43107148	43107148	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	C	43107148	C	C	43107148	3	2	181	1	0	0	0	0	1	0	0	0	12776	962	34	4	1541	4	PTK7	6	43107148	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10		43107148	128007919	21	11475											
DFNA5	1687	hgsc.bcm.edu;ucsc.edu	37	7	24756899	24756899	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	-	24756899	A	-	24756899	7	5	181	1	0	1	0	1	0	0	0	0	4456	372	13	0	843	0	DFNA5	7	24756899	Frame_Shift_Del	DEL	A	TCGA-B0-5402-01A-01D-1501-10		24756899	134381764	22	11476											
STEAP1	26872	broad.mit.edu	37	7	89791288	89791288	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	89791288	T	T	89791288	3	4	181	1	0	0	0	0	1	0	0	0	15289	1377	48	4	668	4	STEAP1	7	89791288	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	65034389	89791288	69347375	23	11477											
ZNF467	168544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	149468119	149468119	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	G	149468119	C	G	149468119	3	3	181	1	0	0	0	0	1	0	0	0	17939	826	29	4	1800	4	ZNF467	7	149468119	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	59676831	149468119	9670544	24	11478											
GALNTL5	168391	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151684265	151684265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	C	151684265	A	C	151684265	3	2	181	1	0	0	0	0	1	0	0	0	6231	275	10	5	571	5	GALNTL5	7	151684265	Missense_Mutation	SNP	A	TCGA-B0-5402-01A-01D-1501-10	2216146	151684265	7454398	25	11479											
MAK16	84549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	33354168	33354168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	C	33354168	T	C	33354168	3	2	181	1	0	0	0	0	1	0	0	0	9205	1493	52	3	578	3	MAK16	8	33354168	Missense_Mutation	SNP	T	TCGA-B0-5402-01A-01D-1501-10		33354168	113009854	26	11480											
COL22A1	169044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	139845296	139845296	+	Silent	SNP	C	C	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	139845296	C	T	139845296	2	4	181	1	0	0	0	0	0	0	0	1	3683	581	21	2		2	COL22A1	8	139845296	Silent	SNP	C	TCGA-B0-5402-01A-01D-1501-10	106491128	139845296	6518726	27	11481											
GALT	2592	broad.mit.edu;ucsc.edu	37	9	34648884	34648884	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	34648884	T	T	34648884	3	4	181	1	0	0	0	0	1	0	0	0	6237	962	34	4	843	4	GALT	9	34648884	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10		34648884	106564547	28	11482											
COL15A1	1306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	101818627	101818627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	101818627	G	T	101818627	3	4	181	1	0	0	0	0	1	0	0	0	3674	1261	44	4	3416	4	COL15A1	9	101818627	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	67169743	101818627	39394804	29	11483											
OR5M8	219484	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56258051	56258051	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	C	56258051	A	C	56258051	3	2	181	1	0	0	0	0	1	0	0	0	11183	333	12	5	143	5	OR5M8	11	56258051	Missense_Mutation	SNP	A	TCGA-B0-5402-01A-01D-1501-10		56258051	78748465	30	11484											
CCDC81	60494	broad.mit.edu;ucsc.edu	37	11	86097128	86097128	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	86097128	A	A	86097128	3	1	181	1	0	0	0	0	1	0	0	0	2857	1377	48	2	121	2	CCDC81	11	86097128	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	29839077	86097128	48909388	31	11485											
CEP164	22897	broad.mit.edu	37	11	117280564	117280564	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	117280564	A	A	117280564	3	1	181	1	0	0	0	0	1	0	0	0	3251	1319	46	2	4089	2	CEP164	11	117280564	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	31183436	117280564	17725952	32	11486											
OR10G7	390265	broad.mit.edu;hgsc.bcm.edu	37	11	123909221	123909221	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	123909221	A	T	123909221	3	4	181	1	0	0	0	0	1	0	0	0	10909	246	9	5	451	5	OR10G7	11	123909221	Missense_Mutation	SNP	A	TCGA-B0-5402-01A-01D-1501-10	6628657	123909221	11097295	33	11487											
C11orf45	219833	broad.mit.edu;ucsc.edu	37	11	128772493	128772493	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	128772493	T	T	128772493	3	4	181	1	0	0	0	0	1	0	0	0	1644	1232	43	4	44	4	C11orf45	11	128772493	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	4863272	128772493	6234023	34	11488											
USP5	8078	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6969582	6969582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	6969582	G	A	6969582	3	1	181	1	0	0	0	0	1	0	0	0	17093	1203	42	2	1313	2	USP5	12	6969582	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10		6969582	126882313	35	11489											
PDE3A	5139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	20792854	20792854	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	20792854	T	A	20792854	4	1	181	1	0	0	0	0	0	1	0	0	11644	1500	52	5	2252	5	PDE3A	12	20792854	Nonsense_Mutation	SNP	T	TCGA-B0-5402-01A-01D-1501-10	13823272	20792854	113059041	36	11490											
PDE1B	5153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54970410	54970410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	54970410	G	A	54970410	3	1	181	1	0	0	0	0	1	0	0	0	11641	1377	48	2	1539	2	PDE1B	12	54970410	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	34177556	54970410	78881485	37	11491											
TIMELESS	8914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56816773	56816773	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	C	56816773	G	C	56816773	3	2	181	1	0	0	0	0	1	0	0	0	15916	962	34	4	1374	4	TIMELESS	12	56816773	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	1846363	56816773	77035122	38	11492											
ALDH2	217	hgsc.bcm.edu	37	12	112229167	112229168	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	C	112229168	-	C	112229167	7	5	181	1	0	1	1	0	0	0	0	0	496	1203	42	0	765	0	ALDH2	12	112229167	Frame_Shift_Ins	INS	-	TCGA-B0-5402-01A-01D-1501-10	55412394	112229167	21622728	39	11493											
RSRC2	65117	hgsc.bcm.edu	37	12	123005002	123005002	+	RNA	SNP	A	A	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	123005002	A	T	123005002	1	4	181	0	1	0	0	0	0	0	0	0	13728	348	12	5		5	RSRC2	12	123005002	RNA	SNP	A	TCGA-B0-5402-01A-01D-1501-10	10775835	123005002	10846893	40	11494											
GOLGA3	2802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133359043	133359043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	133359043	G	A	133359043	3	1	181	1	0	0	0	0	1	0	0	0	6561	1145	40	1	1224	1	GOLGA3	12	133359043	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	10354041	133359043	492852	41	11495											
IFT88	8100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	21205163	21205163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	21205163	G	T	21205163	3	4	181	1	0	0	0	0	1	0	0	0	7573	933	33	4	1397	4	IFT88	13	21205163	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10		21205163	93964715	42	11496											
LRCH1	23143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	47303069	47303069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	47303069	C	T	47303069	3	4	181	1	0	0	0	0	1	0	0	0	8939	594	21	2	2027	2	LRCH1	13	47303069	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	26097906	47303069	67866809	43	11497											
RPL3L	6123	broad.mit.edu;ucsc.edu	37	16	1997038	1997038	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	A	1997038	A	A	1997038	3	1	181	1	0	0	0	0	1	0	0	0	13607	680	24	4	493	4	RPL3L	16	1997038	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10		1997038	88357715	44	11498											
HSF4	3299	broad.mit.edu	37	16	67200251	67200251	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	67200251	T	T	67200251	3	4	181	1	0	0	0	0	1	0	0	0	7405	1261	44	4	532	4	HSF4	16	67200251	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10	65203213	67200251	23154502	45	11499											
KLHL10	317719	broad.mit.edu;hgsc.bcm.edu	37	17	40001990	40001990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	40001990	G	T	40001990	3	4	181	1	0	0	0	0	1	0	0	0	8373	1348	47	4	1307	4	KLHL10	17	40001990	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10		40001990	41193220	46	11500											
ARHGAP28	79822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	6859884	6859884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	6859884	G	T	6859884	3	4	181	1	0	0	0	0	1	0	0	0	877	1165	41	4	247	4	ARHGAP28	18	6859884	Missense_Mutation	SNP	G	TCGA-B0-5402-01A-01D-1501-10		6859884	71217364	47	11501											
C19orf39	0	hgsc.bcm.edu;ucsc.edu	37	19	11486464	11486464	+	Missense_Mutation	SNP	C	C	G	rs11542550	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	G	11486464	C	G	11486464	3	3	181	1	0	0	0	0	1	0	0	0	1924	506	18	4	468	4	C19orf39	19	11486464	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10		11486464	47642519	48	11502											
PEPD	5184	broad.mit.edu	37	19	33878351	33878351	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	33878351	T	T	33878351	3	4	181	1	0	0	0	0	1	0	0	0	11735	652	23	1	104	1	PEPD	19	33878351	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10	22391887	33878351	25250632	49	11503											
RYR1	6261	broad.mit.edu	37	19	38976694	38976695	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	G	38976695	G	G	38976694	7	5	181	1	0	1	1	0	0	0	0	0	13781	681	24	0	5533	0	RYR1	19	38976694	Frame_Shift_Ins	INS	-	TCGA-B0-5402-01A-01D-1501-10	5098343	38976694	20152289	50	11504											
TGM6	343641	broad.mit.edu;ucsc.edu	37	20	2398051	2398051	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	2398051	T	T	2398051	3	4	181	1	0	0	0	0	1	0	0	0	15846	739	26	2	1548	2	TGM6	20	2398051	Missense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10		2398051	60627469	51	11505											
C20orf118	140711	broad.mit.edu;ucsc.edu	37	20	35507457	35507457	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	G	35507457	G	G	35507457	3	3	181	1	0	0	0	0	1	0	0	0	2086	1783	62	5	213	5	C20orf118	20	35507457	Missense_Mutation	SNP	T	TCGA-B0-5402-01A-01D-1501-10	33109406	35507457	27518063	52	11506											
NDUFV3	4731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	44323941	44323941	+	Silent	SNP	A	A	G	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	G	44323941	A	G	44323941	2	3	181	1	0	0	0	0	0	0	0	1	10308	330	12	3		3	NDUFV3	21	44323941	Silent	SNP	A	TCGA-B0-5402-01A-01D-1501-10		44323941	3805954	53	11507											
ATP1B4	23439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	119500536	119500536	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5402-01A-01D-1501-10	TCGA-B0-5402-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca62bea0-a008-481e-8a91-d0f3a9598255	6e644c17-dc2b-4e7d-a73d-4d4d14695390	T	119500536	C	T	119500536	4	4	181	1	0	0	0	0	0	1	0	0	1135	827	29	2	226	2	ATP1B4	23	119500536	Nonsense_Mutation	SNP	C	TCGA-B0-5402-01A-01D-1501-10		119500536	35770024	54	11508											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11177077	11177077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	11177077	A	C	11177077	3	2	182	1	0	0	0	0	1	0	0	0	9961	11	1	5	685	5	MTOR	1	11177077	Missense_Mutation	SNP	A	TCGA-B0-5691-01A-11D-1534-10		11177077	238073544	1	11509											
NFIA	4774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	61743222	61743222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	61743222	C	T	61743222	3	4	182	1	0	0	0	0	1	0	0	0	10377	594	21	2	746	2	NFIA	1	61743222	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	50566145	61743222	187507399	2	11510											
WDR78	79819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67358977	67358977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	G	67358977	T	G	67358977	3	3	182	1	0	0	0	0	1	0	0	0	17340	1490	52	5	2198	5	WDR78	1	67358977	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10	5615755	67358977	181891644	3	11511											
RBM8A	9939	broad.mit.edu;hgsc.bcm.edu	37	1	145509177	145509177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	145509177	G	T	145509177	3	4	182	1	0	0	0	0	1	0	0	0	13159	942	33	4	513	4	RBM8A	1	145509177	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	78150200	145509177	103741444	4	11512											
FCRL5	83416	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	157497598	157497598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	157497598	G	A	157497598	3	1	182	1	0	0	0	0	1	0	0	0	5805	1116	39	1	1200	1	FCRL5	1	157497598	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	11988421	157497598	91753023	5	11513											
RBM34	23029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	235295228	235295228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	G	235295228	T	G	235295228	3	3	182	1	0	0	0	0	1	0	0	0	13144	1763	61	5	203	5	RBM34	1	235295228	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10	77797630	235295228	13955393	6	11514											
ROCK2	9475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11348011	11348011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	11348011	T	A	11348011	3	1	182	1	0	0	0	0	1	0	0	0	13531	1551	54	5	1832	5	ROCK2	2	11348011	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10		11348011	231851362	7	11515	135	2									
ROCK2	9475	broad.mit.edu;ucsc.edu	37	2	11348012	11348012	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	11348012	T	T	11348012	3	4	182	1	0	0	0	0	1	0	0	0	13531	922	32	2	1833	2	ROCK2	2	11348012	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	1	11348012	231851361	8	11516	135	2									
LTBP1	4052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	33534615	33534615	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	G	33534615	C	G	33534615	3	3	182	1	0	0	0	0	1	0	0	0	9080	478	17	4	3741	4	LTBP1	2	33534615	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	22186603	33534615	209664758	9	11517											
DNAH6	1768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	84912547	84912547	+	Silent	SNP	T	T	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	84912547	T	C	84912547	2	2	182	1	0	0	0	0	0	0	0	1	4607	1742	61	3		3	DNAH6	2	84912547	Silent	SNP	T	TCGA-B0-5691-01A-11D-1534-10	51377932	84912547	158286826	10	11518											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191499	10191499	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	-	10191499	G	-	10191499	7	5	182	1	0	1	0	1	0	0	0	0	17174	991	35	0	502	0	VHL	3	10191499	Frame_Shift_Del	DEL	G	TCGA-B0-5691-01A-11D-1534-10		10191499	187830931	11	11519											
BOC	91653	broad.mit.edu;ucsc.edu	37	3	112969550	112969550	+	Silent	SNP	G	T	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	112969550	T	T	112969550	2	4	182	1	0	0	0	0	0	0	0	1	1481	1335	47	4		4	BOC	3	112969550	Silent	SNP	G	TCGA-B0-5691-01A-11D-1534-10	102778051	112969550	85052880	12	11520											
CDV3	55573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	133302937	133302937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	133302937	T	C	133302937	3	2	182	1	0	0	0	0	1	0	0	0	3183	1435	50	3	419	3	CDV3	3	133302937	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10	20333387	133302937	64719493	13	11521											
LRRTM2	26045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	138209538	138209538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	138209538	A	C	138209538	3	2	182	1	0	0	0	0	1	0	0	0	9047	217	8	5	842	5	LRRTM2	5	138209538	Missense_Mutation	SNP	A	TCGA-B0-5691-01A-11D-1534-10		138209538	42705722	14	11522											
GALNT10	55568	broad.mit.edu;ucsc.edu	37	5	153709212	153709212	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	153709212	C	C	153709212	3	2	182	1	0	0	0	0	1	0	0	0	6215	1551	54	3	496	3	GALNT10	5	153709212	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10	15499674	153709212	27206048	15	11523											
SERPINB1	1992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	2836102	2836102	+	Silent	SNP	C	C	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	2836102	C	T	2836102	2	4	182	1	0	0	0	0	0	0	0	1	14109	639	23	1		1	SERPINB1	6	2836102	Silent	SNP	C	TCGA-B0-5691-01A-11D-1534-10		2836102	168278965	16	11524											
OR2J2	26707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	29141782	29141782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	29141782	T	C	29141782	3	2	182	1	0	0	0	0	1	0	0	0	11010	1754	61	3	372	3	OR2J2	6	29141782	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10	26305680	29141782	141973285	17	11525											
CUL7	9820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43019452	43019452	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	G	43019452	C	G	43019452	3	3	182	1	0	0	0	0	1	0	0	0	4062	912	32	4	4562	4	CUL7	6	43019452	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	13877670	43019452	128095615	18	11526											
MLLT4	4301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	168344647	168344647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	168344647	G	T	168344647	3	4	182	1	0	0	0	0	1	0	0	0	9636	971	34	4	3343	4	MLLT4	6	168344647	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	125325195	168344647	2770420	19	11527											
CUX1	1523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	101926034	101926034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	101926034	A	T	101926034	3	4	182	1	0	0	0	0	1	0	0	0	4066	217	8	5	5389	5	CUX1	7	101926034	Missense_Mutation	SNP	A	TCGA-B0-5691-01A-11D-1534-10		101926034	57212629	20	11528											
C7orf58	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	120782148	120782148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	120782148	C	T	120782148	3	4	182	1	0	0	0	0	1	0	0	0	2407	623	22	2	2066	2	C7orf58	7	120782148	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	18856114	120782148	38356515	21	11529											
LRRCC1	85444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	86037088	86037088	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	86037088	A	C	86037088	3	2	182	1	0	0	0	0	1	0	0	0	9033	14	1	5	1216	5	LRRCC1	8	86037088	Missense_Mutation	SNP	A	TCGA-B0-5691-01A-11D-1534-10		86037088	60326934	22	11530											
C9orf85	138241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	74526670	74526670	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	74526670	A	T	74526670	3	4	182	1	0	0	0	0	1	0	0	0	2503	43	2	5	22	5	C9orf85	9	74526670	Missense_Mutation	SNP	A	TCGA-B0-5691-01A-11D-1534-10		74526670	66686761	23	11531											
POMT1	10585	broad.mit.edu;ucsc.edu	37	9	134379711	134379711	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	134379711	C	C	134379711	3	2	182	1	0	0	0	0	1	0	0	0	12252	1522	53	3	108	3	POMT1	9	134379711	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10	59853041	134379711	6833720	24	11532											
SETX	23064	hgsc.bcm.edu;ucsc.edu	37	9	135202188	135202190	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	-	135202190	AAA	-	135202188	7	5	182	1	0	1	0	1	0	0	0	0	14154	359	13	0	3304	0	SETX	9	135202188	In_Frame_Del	DEL	AAA	TCGA-B0-5691-01A-11D-1534-10	822477	135202188	6011243	25	11533											
ARMC4	55130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	28229610	28229610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	28229610	G	A	28229610	3	1	182	1	0	0	0	0	1	0	0	0	953	1145	40	1	1298	1	ARMC4	10	28229610	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10		28229610	107305137	26	11534											
OPN4	94233	broad.mit.edu;hgsc.bcm.edu	37	10	88422065	88422065	+	Missense_Mutation	SNP	G	G	A	rs142050572		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	88422065	G	A	88422065	3	1	182	1	0	0	0	0	1	0	0	0	10889	1116	39	1	1197	1	OPN4	10	88422065	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	60192455	88422065	47112682	27	11535											
IPO7	10527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	9459375	9459375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	9459375	G	A	9459375	3	1	182	1	0	0	0	0	1	0	0	0	7804	1377	48	2	2425	2	IPO7	11	9459375	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10		9459375	125547141	28	11536											
OR10G4	390264	broad.mit.edu;hgsc.bcm.edu	37	11	123887117	123887117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	123887117	C	T	123887117	3	4	182	1	0	0	0	0	1	0	0	0	10908	536	19	1	838	1	OR10G4	11	123887117	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	114427742	123887117	11119399	29	11537											
A2ML1	144568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9008181	9008181	+	Silent	SNP	G	G	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	9008181	G	A	9008181	2	1	182	1	0	0	0	0	0	0	0	1	5	1103	39	1		1	A2ML1	12	9008181	Silent	SNP	G	TCGA-B0-5691-01A-11D-1534-10		9008181	124843714	30	11538											
PRB4	5545	broad.mit.edu;hgsc.bcm.edu	37	12	11461568	11461568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	11461568	G	T	11461568	3	4	182	1	0	0	0	0	1	0	0	0	12455	1174	41	4	398	4	PRB4	12	11461568	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	2453387	11461568	122390327	31	11539											
C12orf11	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	27081163	27081163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	27081163	T	C	27081163	3	2	182	1	0	0	0	0	1	0	0	0	1677	1754	61	3	1613	3	C12orf11	12	27081163	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10	15619595	27081163	106770732	32	11540											
C12orf35	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32134198	32134198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	32134198	A	C	32134198	3	2	182	1	0	0	0	0	1	0	0	0	1684	40	2	5	311	5	C12orf35	12	32134198	Missense_Mutation	SNP	A	TCGA-B0-5691-01A-11D-1534-10	5053035	32134198	101717697	33	11541											
LMO7	4008	hgsc.bcm.edu;ucsc.edu	37	13	76381790	76381791	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	76381791	-	T	76381790	7	5	182	1	0	1	1	0	0	0	0	0	8862	564	20	0	1569	0	LMO7	13	76381790	Frame_Shift_Ins	INS	-	TCGA-B0-5691-01A-11D-1534-10		76381790	38788088	34	11542											
CARS2	79587	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	111340142	111340142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	111340142	G	T	111340142	3	4	182	1	0	0	0	0	1	0	0	0	2660	1261	44	4	1241	4	CARS2	13	111340142	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	34958352	111340142	3829736	35	11543											
NFATC4	4776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24845299	24845299	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	G	24845299	T	G	24845299	3	3	182	1	0	0	0	0	1	0	0	0	10372	1841	64	5	2271	5	NFATC4	14	24845299	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10		24845299	82504241	36	11544											
AK7	122481	hgsc.bcm.edu	37	14	96949471	96949472	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	G	96949472	-	G	96949471	7	5	182	1	0	1	1	0	0	0	0	0	444	1580	55	0	1951	0	AK7	14	96949471	Frame_Shift_Ins	INS	-	TCGA-B0-5691-01A-11D-1534-10	72104172	96949471	10400069	37	11545											
NARG2	79664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	60740179	60740179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	60740179	T	A	60740179	3	1	182	1	0	0	0	0	1	0	0	0	10176	1841	64	5	687	5	NARG2	15	60740179	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10		60740179	41791213	38	11546											
SOLH	6650	broad.mit.edu	37	16	603028	603063	+	Splice_Site	DEL	CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC	-	-	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC	CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	-	603063	-	-	603028	8	5	182	1	0	1	0	1	0	0	1	0	14938	739	26	0	3108	0	SOLH	16	603028	Splice_Site	DEL	CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC	TCGA-B0-5691-01A-11D-1534-10		603028	89751725	39	11547											
MMP2	4313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	55519518	55519518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	55519518	G	A	55519518	3	1	182	1	0	0	0	0	1	0	0	0	9665	1261	44	2	686	2	MMP2	16	55519518	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	54916490	55519518	34835235	40	11548											
ADAMTS18	170692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	77353798	77353798	+	Missense_Mutation	SNP	C	C	T	rs149031657	byfrequency;alternate_allele	TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	77353798	C	T	77353798	3	4	182	1	0	0	0	0	1	0	0	0	263	768	27	1	1217	1	ADAMTS18	16	77353798	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	21834280	77353798	13000955	41	11549											
PER1	5187	broad.mit.edu;ucsc.edu	37	17	8052099	8052099	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	8052099	A	A	8052099	3	1	182	1	0	0	0	0	1	0	0	0	11736	507	18	4	3025	4	PER1	17	8052099	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10		8052099	73143111	42	11550											
SMARCE1	6605	hgsc.bcm.edu;ucsc.edu	37	17	38793756	38793758	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	-	38793758	CCT	-	38793756	7	5	182	1	0	1	0	1	0	0	0	0	14793	506	18	0	1038	0	SMARCE1	17	38793756	In_Frame_Del	DEL	CCT	TCGA-B0-5691-01A-11D-1534-10	30741657	38793756	42401454	43	11551											
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197638	39197638	+	Silent	SNP	A	A	G	rs112542604	by1000genomes	TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	G	39197638	A	G	39197638	2	3	182	1	0	0	0	0	0	0	0	1	8509	273	10	3		3	KRTAP1-1	17	39197638	Silent	SNP	A	TCGA-B0-5691-01A-11D-1534-10	403882	39197638	41997572	44	11552											
KLHL10	317719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40004451	40004451	+	Silent	SNP	A	A	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	40004451	A	C	40004451	2	2	182	1	0	0	0	0	0	0	0	1	8373	175	7	5		5	KLHL10	17	40004451	Silent	SNP	A	TCGA-B0-5691-01A-11D-1534-10	806813	40004451	41190759	45	11553											
LAMA3	3909	hgsc.bcm.edu	37	18	21353525	21353525	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	G	21353525	C	G	21353525	3	3	182	1	0	0	0	0	1	0	0	0	8614	594	21	4	1281	4	LAMA3	18	21353525	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10		21353525	56723723	46	11554	136	2									
LAMA3	3909	hgsc.bcm.edu;ucsc.edu	37	18	21353526	21353527	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	21353527	-	T	21353526	7	5	182	1	0	1	1	0	0	0	0	0	8614	175	7	0	1282	0	LAMA3	18	21353526	Frame_Shift_Ins	INS	-	TCGA-B0-5691-01A-11D-1534-10	1	21353526	56723722	47	11555	136	2									
S1PR4	8698	broad.mit.edu	37	19	3179916	3179916	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	C	3179916	C	C	3179916	3	2	182	1	0	0	0	0	1	0	0	0	13809	1667	58	3	1128	3	S1PR4	19	3179916	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10		3179916	55949067	48	11556											
GDF15	9518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18497194	18497194	+	Silent	SNP	C	C	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	18497194	C	A	18497194	2	1	182	1	0	0	0	0	0	0	0	1	6320	581	21	4		4	GDF15	19	18497194	Silent	SNP	C	TCGA-B0-5691-01A-11D-1534-10	15317278	18497194	40631789	49	11557											
LIG1	3978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	48634399	48634399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	48634399	C	A	48634399	3	1	182	1	0	0	0	0	1	0	0	0	8788	912	32	4	1044	4	LIG1	19	48634399	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	30137205	48634399	10494584	50	11558											
FCGRT	2217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50017370	50017370	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	50017370	T	A	50017370	3	1	182	1	0	0	0	0	1	0	0	0	5793	1783	62	5	311	5	FCGRT	19	50017370	Missense_Mutation	SNP	T	TCGA-B0-5691-01A-11D-1534-10	1382971	50017370	9111613	51	11559											
PRRG2	5639	hgsc.bcm.edu	37	19	50093217	50093218	+	In_Frame_Ins	INS	-	-	CCACCC	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	CCACCC	50093218	-	CCACCC	50093217	7	5	182	1	0	1	1	0	0	0	0	0	12616	1538	54	0	516	0	PRRG2	19	50093217	In_Frame_Ins	INS	-	TCGA-B0-5691-01A-11D-1534-10	75847	50093217	9035766	52	11560											
KIR2DS4	3809	broad.mit.edu;hgsc.bcm.edu	37	19	55351066	55351066	+	Missense_Mutation	SNP	C	C	T	rs1130503		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	55351066	C	T	55351066	3	4	182	1	0	0	0	0	1	0	0	0	8326	536	19	1	568	1	KIR2DS4	19	55351066	Missense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	5257849	55351066	3777917	53	11561											
ZSCAN18	65982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58597544	58597544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	58597544	G	T	58597544	3	4	182	1	0	0	0	0	1	0	0	0	18242	1232	43	4	705	4	ZSCAN18	19	58597544	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	3246478	58597544	531439	54	11562											
MKKS	8195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	10393381	10393381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	G	10393381	A	G	10393381	3	3	182	1	0	0	0	0	1	0	0	0	9607	159	6	3	946	3	MKKS	20	10393381	Missense_Mutation	SNP	A	TCGA-B0-5691-01A-11D-1534-10		10393381	52632139	55	11563											
XRN2	22803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	21321460	21321460	+	Silent	SNP	A	A	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	21321460	A	T	21321460	2	4	182	1	0	0	0	0	0	0	0	1	17472	175	7	5		5	XRN2	20	21321460	Silent	SNP	A	TCGA-B0-5691-01A-11D-1534-10	10928079	21321460	41704060	56	11564											
SUN5	140732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31571646	31571646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	31571646	G	A	31571646	3	1	182	1	0	0	0	0	1	0	0	0	15406	1116	39	1	49	1	SUN5	20	31571646	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	10250186	31571646	31453874	57	11565											
ZHX3	23051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39832047	39832047	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	39832047	C	A	39832047	4	1	182	1	0	0	0	0	0	1	0	0	17689	835	29	4	1368	4	ZHX3	20	39832047	Nonsense_Mutation	SNP	C	TCGA-B0-5691-01A-11D-1534-10	8260401	39832047	23193473	58	11566											
CDH4	1002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	60511821	60511821	+	Silent	SNP	C	C	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	60511821	C	T	60511821	2	4	182	1	0	0	0	0	0	0	0	1	3114	581	21	2		2	CDH4	20	60511821	Silent	SNP	C	TCGA-B0-5691-01A-11D-1534-10	20679774	60511821	2513699	59	11567											
CLCN4	1183	hgsc.bcm.edu;ucsc.edu	37	X	10180545	10180545	+	Silent	SNP	C	C	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	10180545	C	T	10180545	2	4	182	1	0	0	0	0	0	0	0	1	3467	755	27	1		1	CLCN4	23	10180545	Silent	SNP	C	TCGA-B0-5691-01A-11D-1534-10		10180545	145090015	60	11568											
FAM47C	442444	broad.mit.edu;hgsc.bcm.edu	37	X	37028223	37028223	+	Silent	SNP	C	C	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	37028223	C	A	37028223	2	1	182	1	0	0	0	0	0	0	0	1	5578	610	22	4		4	FAM47C	23	37028223	Silent	SNP	C	TCGA-B0-5691-01A-11D-1534-10	26847678	37028223	118242337	61	11569											
LPAR4	2846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	78011222	78011222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	T	78011222	G	T	78011222	4	4	182	1	0	0	0	0	0	1	0	0	8914	1175	41	4	858	4	LPAR4	23	78011222	Nonsense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	40982999	78011222	77259338	62	11570											
NDUFA1	4694	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	119005937	119005937	+	Silent	SNP	G	G	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	119005937	G	A	119005937	2	1	182	1	0	0	0	0	0	0	0	1	10266	1335	47	2		2	NDUFA1	23	119005937	Silent	SNP	G	TCGA-B0-5691-01A-11D-1534-10	40994715	119005937	36264623	63	11571											
CCDC160	347475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	133379666	133379666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	133379666	G	A	133379666	3	1	182	1	0	0	0	0	1	0	0	0	2794	1029	36	2	838	2	CCDC160	23	133379666	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	14373729	133379666	21890894	64	11572											
BRCC3	79184	broad.mit.edu	37	X	154344345	154344345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5691-01A-11D-1534-10	TCGA-B0-5691-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac2e1d29-e239-4dab-9d81-77c8d45970eb	732d3bc7-b0c9-4999-9e3a-3f831f437d85	A	154344345	A	A	154344345	3	1	182	1	0	0	0	0	1	0	0	0	1502	1059	37	1	671	1	BRCC3	23	154344345	Missense_Mutation	SNP	G	TCGA-B0-5691-01A-11D-1534-10	20964679	154344345	926215	65	11573											
AADACL4	343066	broad.mit.edu	37	1	12726742	12726742	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	C	12726742	C	C	12726742	3	2	183	1	0	0	0	0	1	0	0	0	13	1406	49	3	1234	3	AADACL4	1	12726742	Missense_Mutation	SNP	T	TCGA-B0-5692-01A-11D-1534-10		12726742	236523879	1	11574											
ARID1A	8289	hgsc.bcm.edu;ucsc.edu	37	1	27057952	27057952	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	27057952	C	-	27057952	7	5	183	1	0	1	0	1	0	0	0	0	913	739	26	0	1670	0	ARID1A	1	27057952	Frame_Shift_Del	DEL	C	TCGA-B0-5692-01A-11D-1534-10	14331210	27057952	222192669	2	11575											
FAM76A	199870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	28081734	28081734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	28081734	C	A	28081734	3	1	183	1	0	0	0	0	1	0	0	0	5631	507	18	4	760	4	FAM76A	1	28081734	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	1023782	28081734	221168887	3	11576											
PTP4A2	8073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32377374	32377374	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	32377374	C	T	32377374	4	4	183	1	0	0	0	0	0	1	0	0	12782	508	18	2	272	2	PTP4A2	1	32377374	Nonsense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	4295640	32377374	216873247	4	11577											
GJB4	127534	broad.mit.edu;hgsc.bcm.edu	37	1	35227533	35227533	+	Silent	SNP	C	C	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	35227533	C	T	35227533	2	4	183	1	0	0	0	0	0	0	0	1	6417	747	26	2		2	GJB4	1	35227533	Silent	SNP	C	TCGA-B0-5692-01A-11D-1534-10	2850159	35227533	214023088	5	11578											
GRIK3	2899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	37271904	37271904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	37271904	C	A	37271904	3	1	183	1	0	0	0	0	1	0	0	0	6782	912	32	4	656	4	GRIK3	1	37271904	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	2044371	37271904	211978717	6	11579											
RLF	6018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40661376	40661376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	40661376	G	A	40661376	3	1	183	1	0	0	0	0	1	0	0	0	13402	1261	44	2	561	2	RLF	1	40661376	Missense_Mutation	SNP	G	TCGA-B0-5692-01A-11D-1534-10	3389472	40661376	208589245	7	11580											
COL11A1	1301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	103355037	103355037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	103355037	C	T	103355037	3	4	183	1	0	0	0	0	1	0	0	0	3669	690	24	2	1018	2	COL11A1	1	103355037	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	62693661	103355037	145895584	8	11581											
MNDA	4332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158812131	158812131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	158812131	A	G	158812131	3	3	183	1	0	0	0	0	1	0	0	0	9683	275	10	3	190	3	MNDA	1	158812131	Missense_Mutation	SNP	A	TCGA-B0-5692-01A-11D-1534-10	55457094	158812131	90438490	9	11582											
ARHGAP25	9938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	69034592	69034592	+	Silent	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	69034592	G	A	69034592	2	1	183	1	0	0	0	0	0	0	0	1	874	1219	43	2		2	ARHGAP25	2	69034592	Silent	SNP	G	TCGA-B0-5692-01A-11D-1534-10		69034592	174164781	10	11583											
RETSAT	54884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	85578126	85578126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	85578126	C	A	85578126	3	1	183	1	0	0	0	0	1	0	0	0	13251	536	19	4	1494	4	RETSAT	2	85578126	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	16543534	85578126	157621247	11	11584											
ITGB6	3694	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160994692	160994692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	160994692	C	G	160994692	3	3	183	1	0	0	0	0	1	0	0	0	7906	864	30	4	1268	4	ITGB6	2	160994692	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	75416566	160994692	82204681	12	11585											
MYO1B	4430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	192228923	192228923	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	192228923	C	A	192228923	4	1	183	1	0	0	0	0	0	1	0	0	10076	838	29	4	991	4	MYO1B	2	192228923	Nonsense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	31234231	192228923	50970450	13	11586											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191528	10191529	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	TT	10191529	-	TT	10191528	7	5	183	1	0	1	1	0	0	0	0	0	17174	101	4	0	531	0	VHL	3	10191528	Frame_Shift_Ins	INS	-	TCGA-B0-5692-01A-11D-1534-10		10191528	187830902	14	11587											
ZMYND10	51364	broad.mit.edu;hgsc.bcm.edu	37	3	50378855	50378855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	50378855	C	A	50378855	3	1	183	1	0	0	0	0	1	0	0	0	17717	826	29	4	17	4	ZMYND10	3	50378855	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	40187327	50378855	147643575	15	11588											
WDFY3	23001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	85674870	85674870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	C	85674870	T	C	85674870	3	2	183	1	0	0	0	0	1	0	0	0	17282	1406	49	3	4997	3	WDFY3	4	85674870	Missense_Mutation	SNP	T	TCGA-B0-5692-01A-11D-1534-10		85674870	105479406	16	11589											
LARP1B	55132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	129128464	129128464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	129128464	A	G	129128464	3	3	183	1	0	0	0	0	1	0	0	0	8636	363	13	3	2673	3	LARP1B	4	129128464	Missense_Mutation	SNP	A	TCGA-B0-5692-01A-11D-1534-10	43453594	129128464	62025812	17	11590											
NEK1	4750	hgsc.bcm.edu;ucsc.edu	37	4	170321451	170321451	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	170321451	T	-	170321451	7	5	183	1	0	1	0	1	0	0	0	0	10328	1406	49	0	96	0	NEK1	4	170321451	Frame_Shift_Del	DEL	T	TCGA-B0-5692-01A-11D-1534-10	41192987	170321451	20832825	18	11591											
AMACR	23600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33989521	33989521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	33989521	C	T	33989521	3	4	183	1	0	0	0	0	1	0	0	0	562	710	25	2	384	2	AMACR	5	33989521	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10		33989521	146925739	19	11592											
DAB2	1601	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	39376876	39376876	+	Silent	SNP	T	T	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	39376876	T	A	39376876	2	1	183	1	0	0	0	0	0	0	0	1	4220	1538	54	5		5	DAB2	5	39376876	Silent	SNP	T	TCGA-B0-5692-01A-11D-1534-10	5387355	39376876	141538384	20	11593											
ACSL6	23305	hgsc.bcm.edu;ucsc.edu	37	5	131321125	131321125	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	131321125	A	-	131321125	7	5	183	1	0	1	0	1	0	0	0	0	181	126	5	0	1411	0	ACSL6	5	131321125	Frame_Shift_Del	DEL	A	TCGA-B0-5692-01A-11D-1534-10	91944249	131321125	49594135	21	11594											
PSD2	84249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139217290	139217290	+	Silent	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	139217290	G	A	139217290	2	1	183	1	0	0	0	0	0	0	0	1	12657	1223	43	2		2	PSD2	5	139217290	Silent	SNP	G	TCGA-B0-5692-01A-11D-1534-10	7896165	139217290	41697970	22	11595											
C6orf146	0	hgsc.bcm.edu;ucsc.edu	37	6	4069047	4069058	+	In_Frame_Del	DEL	CTTTTTGGTCCC	CTTTTTGGTCCC	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	CTTTTTGGTCCC	CTTTTTGGTCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	4069058	CTTTTTGGTCCC	-	4069047	7	5	183	1	0	1	0	1	0	0	0	0	2337	912	32	0	120	0	C6orf146	6	4069047	In_Frame_Del	DEL	CTTTTTGGTCCC	TCGA-B0-5692-01A-11D-1534-10		4069047	167046020	23	11596											
CAP2	10486	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	17556592	17556592	+	Silent	SNP	A	A	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	17556592	A	G	17556592	2	3	183	1	0	0	0	0	0	0	0	1	2622	301	11	3		3	CAP2	6	17556592	Silent	SNP	A	TCGA-B0-5692-01A-11D-1534-10	13487545	17556592	153558475	24	11597											
SCUBE3	222663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35212548	35212548	+	Silent	SNP	C	C	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	35212548	C	T	35212548	2	4	183	1	0	0	0	0	0	0	0	1	13959	709	25	2		2	SCUBE3	6	35212548	Silent	SNP	C	TCGA-B0-5692-01A-11D-1534-10	17655956	35212548	135902519	25	11598											
GSTA3	2940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	52764776	52764776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	52764776	T	G	52764776	3	3	183	1	0	0	0	0	1	0	0	0	6839	1435	50	5	310	5	GSTA3	6	52764776	Missense_Mutation	SNP	T	TCGA-B0-5692-01A-11D-1534-10	17552228	52764776	118350291	26	11599											
TRAF3IP2	10758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	111912795	111912796	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	111912796	-	T	111912795	7	5	183	1	0	1	1	0	0	0	0	0	16453	214	8	0	1234	0	TRAF3IP2	6	111912795	Frame_Shift_Ins	INS	-	TCGA-B0-5692-01A-11D-1534-10	59148019	111912795	59202272	27	11600											
ABCB5	340273	hgsc.bcm.edu;ucsc.edu	37	7	20685684	20685684	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	20685684	T	-	20685684	7	5	183	1	0	1	0	1	0	0	0	0	44	1522	53	0	934	0	ABCB5	7	20685684	Frame_Shift_Del	DEL	T	TCGA-B0-5692-01A-11D-1534-10		20685684	138452979	28	11601	137	2									
ABCB5	340273	hgsc.bcm.edu	37	7	20685686	20685686	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	20685686	T	A	20685686	4	1	183	1	0	0	0	0	0	1	0	0	44	1471	51	5	936	5	ABCB5	7	20685686	Nonsense_Mutation	SNP	T	TCGA-B0-5692-01A-11D-1534-10	2	20685686	138452977	29	11602	137	2									
CRHR2	1395	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	30701795	30701795	+	Silent	SNP	G	G	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	30701795	G	T	30701795	2	4	183	1	0	0	0	0	0	0	0	1	3874	1306	46	4		4	CRHR2	7	30701795	Silent	SNP	G	TCGA-B0-5692-01A-11D-1534-10	10016109	30701795	128436868	30	11603											
SSPO	23145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	149485496	149485496	+	Silent	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	149485496	G	A	149485496	2	1	183	1	0	0	0	0	0	0	0	1	15201	1357	47	2		2	SSPO	7	149485496	Silent	SNP	G	TCGA-B0-5692-01A-11D-1534-10	118783701	149485496	9653167	31	11604											
MYOM2	9172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	2005831	2005831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	2005831	G	A	2005831	3	1	183	1	0	0	0	0	1	0	0	0	10099	1145	40	1	507	1	MYOM2	8	2005831	Missense_Mutation	SNP	G	TCGA-B0-5692-01A-11D-1534-10		2005831	144358191	32	11605											
C8orf79	0	hgsc.bcm.edu;ucsc.edu	37	8	12870213	12870216	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	CTTA	CTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	12870216	CTTA	-	12870213	7	5	183	1	0	1	0	1	0	0	0	0	2440	913	32	0	181	0	C8orf79	8	12870213	Frame_Shift_Del	DEL	CTTA	TCGA-B0-5692-01A-11D-1534-10	10864382	12870213	133493809	33	11606											
FGF17	8822	broad.mit.edu;hgsc.bcm.edu	37	8	21903771	21903771	+	Silent	SNP	C	C	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	21903771	C	A	21903771	2	1	183	1	0	0	0	0	0	0	0	1	5852	903	32	4		4	FGF17	8	21903771	Silent	SNP	C	TCGA-B0-5692-01A-11D-1534-10	9033558	21903771	124460251	34	11607											
GPR124	25960	broad.mit.edu	37	8	37693252	37693252	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	37693252	G	G	37693252	3	3	183	1	0	0	0	0	1	0	0	0	6645	768	27	4	2043	4	GPR124	8	37693252	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	15789481	37693252	108670770	35	11608											
RIMS2	9699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	104933998	104933998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	C	104933998	T	C	104933998	3	2	183	1	0	0	0	0	1	0	0	0	13381	1435	50	3	2346	3	RIMS2	8	104933998	Missense_Mutation	SNP	T	TCGA-B0-5692-01A-11D-1534-10	67240746	104933998	41430024	36	11609											
FOXD4L5	653427	hgsc.bcm.edu	37	9	70177922	70177923	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	C	70177923	-	C	70177922	7	5	183	1	0	1	1	0	0	0	0	0	6009	1435	50	0	1192	0	FOXD4L5	9	70177922	Frame_Shift_Ins	INS	-	TCGA-B0-5692-01A-11D-1534-10		70177922	71035509	37	11610											
RBM17	84991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	6143320	6143320	+	Silent	SNP	C	C	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	6143320	C	T	6143320	2	4	183	1	0	0	0	0	0	0	0	1	13132	477	17	2		2	RBM17	10	6143320	Silent	SNP	C	TCGA-B0-5692-01A-11D-1534-10		6143320	129391427	38	11611											
PTCHD3	374308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	27702183	27702183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	27702183	G	T	27702183	3	4	183	1	0	0	0	0	1	0	0	0	12744	1232	43	4	1322	4	PTCHD3	10	27702183	Missense_Mutation	SNP	G	TCGA-B0-5692-01A-11D-1534-10	21558863	27702183	107832564	39	11612											
MARCH5	54708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	94109483	94109483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	94109483	T	G	94109483	3	3	183	1	0	0	0	0	1	0	0	0	9311	1461	51	5	627	5	MARCH5	10	94109483	Missense_Mutation	SNP	T	TCGA-B0-5692-01A-11D-1534-10	66407300	94109483	41425264	40	11613											
LDB1	8861	hgsc.bcm.edu;ucsc.edu	37	10	103870867	103870868	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	103870868	TG	-	103870867	7	5	183	1	0	1	0	1	0	0	0	0	8702	1588	55	0	1059	0	LDB1	10	103870867	Frame_Shift_Del	DEL	TG	TCGA-B0-5692-01A-11D-1534-10	9761384	103870867	31663880	41	11614											
FIBP	9158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65653801	65653801	+	Silent	SNP	C	C	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	65653801	C	T	65653801	2	4	183	1	0	0	0	0	0	0	0	1	5893	494	18	2		2	FIBP	11	65653801	Silent	SNP	C	TCGA-B0-5692-01A-11D-1534-10		65653801	69352715	42	11615											
SYTL2	54843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	85431940	85431940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	85431940	G	A	85431940	3	1	183	1	0	0	0	0	1	0	0	0	15495	1203	42	2	1378	2	SYTL2	11	85431940	Missense_Mutation	SNP	G	TCGA-B0-5692-01A-11D-1534-10	19778139	85431940	49574576	43	11616											
GRIN2B	2904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14019045	14019045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	14019045	G	A	14019045	3	1	183	1	0	0	0	0	1	0	0	0	6787	1232	43	2	4404	2	GRIN2B	12	14019045	Missense_Mutation	SNP	G	TCGA-B0-5692-01A-11D-1534-10		14019045	119832850	44	11617											
ZBTB39	9880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57396861	57396861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	57396861	A	G	57396861	3	3	183	1	0	0	0	0	1	0	0	0	17552	14	1	3	301	3	ZBTB39	12	57396861	Missense_Mutation	SNP	A	TCGA-B0-5692-01A-11D-1534-10	43377816	57396861	76455034	45	11618											
ZFC3H1	196441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	72026187	72026187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	72026187	T	A	72026187	3	1	183	1	0	0	0	0	1	0	0	0	17645	1490	52	5	3128	5	ZFC3H1	12	72026187	Missense_Mutation	SNP	T	TCGA-B0-5692-01A-11D-1534-10	14629326	72026187	61825708	46	11619											
ACTR6	64431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100617614	100617614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	100617614	A	G	100617614	3	3	183	1	0	0	0	0	1	0	0	0	216	333	12	3	1154	3	ACTR6	12	100617614	Missense_Mutation	SNP	A	TCGA-B0-5692-01A-11D-1534-10	28591427	100617614	33234281	47	11620											
N4BP2L2	10443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33016602	33016602	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	33016602	C	G	33016602	3	3	183	1	0	0	0	0	1	0	0	0	10119	536	19	4	198	4	N4BP2L2	13	33016602	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10		33016602	82153276	48	11621											
AP1G2	8906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24033327	24033327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	C	24033327	T	C	24033327	3	2	183	1	0	0	0	0	1	0	0	0	733	1435	50	3	1386	3	AP1G2	14	24033327	Missense_Mutation	SNP	T	TCGA-B0-5692-01A-11D-1534-10		24033327	83316213	49	11622											
YLPM1	56252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75230717	75230717	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	75230717	C	-	75230717	7	5	183	1	0	1	0	1	0	0	0	0	17498	518	18	0	527	0	YLPM1	14	75230717	Frame_Shift_Del	DEL	C	TCGA-B0-5692-01A-11D-1534-10	51197390	75230717	32118823	50	11623											
FAM82A2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41046894	41046894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	41046894	G	T	41046894	3	4	183	1	0	0	0	0	1	0	0	0	5638	1000	35	4	1372	4	FAM82A2	15	41046894	Missense_Mutation	SNP	G	TCGA-B0-5692-01A-11D-1534-10		41046894	61484498	51	11624											
VPS39	23339	hgsc.bcm.edu	37	15	42500325	42500325	+	Silent	SNP	C	C	T	rs149755806	bycluster;by1000genomes	TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	42500325	C	T	42500325	2	4	183	1	0	0	0	0	0	0	0	1	17221	871	31	1		1	VPS39	15	42500325	Silent	SNP	C	TCGA-B0-5692-01A-11D-1534-10	1453431	42500325	60031067	52	11625											
CEP152	22995	hgsc.bcm.edu;ucsc.edu	37	15	49088226	49088228	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	49088228	TTG	-	49088226	7	5	183	1	0	1	0	1	0	0	0	0	3250	1490	52	0	4376	0	CEP152	15	49088226	In_Frame_Del	DEL	TTG	TCGA-B0-5692-01A-11D-1534-10	6587901	49088226	53443166	53	11626											
CCNB2	9133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59415824	59415824	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	59415824	A	T	59415824	3	4	183	1	0	0	0	0	1	0	0	0	2915	217	8	5	1114	5	CCNB2	15	59415824	Missense_Mutation	SNP	A	TCGA-B0-5692-01A-11D-1534-10	10327598	59415824	43115568	54	11627											
ADAMTS7	11173	broad.mit.edu;hgsc.bcm.edu	37	15	79059785	79059785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	79059785	G	A	79059785	3	1	183	1	0	0	0	0	1	0	0	0	271	1029	36	2	2293	2	ADAMTS7	15	79059785	Missense_Mutation	SNP	G	TCGA-B0-5692-01A-11D-1534-10	19643961	79059785	23471607	55	11628											
RASGRF1	5923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	79264229	79264229	+	Silent	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	79264229	G	A	79264229	2	1	183	1	0	0	0	0	0	0	0	1	13085	1372	48	2		2	RASGRF1	15	79264229	Silent	SNP	G	TCGA-B0-5692-01A-11D-1534-10	204444	79264229	23267163	56	11629											
ANKS3	124401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4776983	4776983	+	Silent	SNP	G	G	C	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	C	4776983	G	C	4776983	2	2	183	1	0	0	0	0	0	0	0	1	690	1161	41	4		4	ANKS3	16	4776983	Silent	SNP	G	TCGA-B0-5692-01A-11D-1534-10		4776983	85577770	57	11630											
MKL2	57496	broad.mit.edu;ucsc.edu	37	16	14304164	14304164	+	Silent	SNP	A	G	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	14304164	G	G	14304164	2	3	183	1	0	0	0	0	0	0	0	1	9609	173	6	3		3	MKL2	16	14304164	Silent	SNP	A	TCGA-B0-5692-01A-11D-1534-10	9527181	14304164	76050589	58	11631											
CDH1	999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68845698	68845698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	68845698	A	G	68845698	3	3	183	1	0	0	0	0	1	0	0	0	3097	101	4	3	970	3	CDH1	16	68845698	Missense_Mutation	SNP	A	TCGA-B0-5692-01A-11D-1534-10	54541534	68845698	21509055	59	11632											
MYH13	8735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10253892	10253892	+	Silent	SNP	C	C	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	10253892	C	T	10253892	2	4	183	1	0	0	0	0	0	0	0	1	10039	639	23	1		1	MYH13	17	10253892	Silent	SNP	C	TCGA-B0-5692-01A-11D-1534-10		10253892	70941318	60	11633											
NOS2	4843	broad.mit.edu	37	17	26087758	26087758	+	Silent	SNP	G	A	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	26087758	A	A	26087758	2	1	183	1	0	0	0	0	0	0	0	1	10550	1165	41	2		2	NOS2	17	26087758	Silent	SNP	G	TCGA-B0-5692-01A-11D-1534-10	15833866	26087758	55107452	61	11634											
PIP4K2B	8396	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36943164	36943164	+	Silent	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	36943164	G	A	36943164	2	1	183	1	0	0	0	0	0	0	0	1	11944	962	34	2		2	PIP4K2B	17	36943164	Silent	SNP	G	TCGA-B0-5692-01A-11D-1534-10	10855406	36943164	44252046	62	11635											
COL1A1	1277	broad.mit.edu;ucsc.edu	37	17	48266574	48266574	+	Silent	SNP	A	G	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	48266574	G	G	48266574	2	3	183	1	0	0	0	0	0	0	0	1	3679	175	7	3		3	COL1A1	17	48266574	Silent	SNP	A	TCGA-B0-5692-01A-11D-1534-10	11323410	48266574	32928636	63	11636											
PPP4R1	9989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	9570186	9570186	+	Silent	SNP	T	T	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	9570186	T	A	9570186	2	1	183	1	0	0	0	0	0	0	0	1	12413	1509	53	5		5	PPP4R1	18	9570186	Silent	SNP	T	TCGA-B0-5692-01A-11D-1534-10		9570186	68507062	64	11637											
FBN3	84467	hgsc.bcm.edu;ucsc.edu	37	19	8183824	8183825	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	8183825	AC	-	8183824	7	5	183	1	0	1	0	1	0	0	0	0	5711	273	10	0	5291	0	FBN3	19	8183824	Frame_Shift_Del	DEL	AC	TCGA-B0-5692-01A-11D-1534-10		8183824	50945159	65	11638											
ALKBH6	84964	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36504305	36504305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	36504305	C	T	36504305	3	4	183	1	0	0	0	0	1	0	0	0	531	507	18	2	745	2	ALKBH6	19	36504305	Missense_Mutation	SNP	C	TCGA-B0-5692-01A-11D-1534-10	28320481	36504305	22624678	66	11639											
ZNF8	7554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58805702	58805702	+	Silent	SNP	C	C	G	rs142117860	alternate_allele	TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	58805702	C	G	58805702	2	3	183	1	0	0	0	0	0	0	0	1	18179	813	29	4		4	ZNF8	19	58805702	Silent	SNP	C	TCGA-B0-5692-01A-11D-1534-10	22301397	58805702	323281	67	11640											
CHODL	140578	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	19629058	19629058	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	A	19629058	G	A	19629058	4	1	183	1	0	0	0	0	0	1	0	0	3366	1183	41	2	318	2	CHODL	21	19629058	Nonsense_Mutation	SNP	G	TCGA-B0-5692-01A-11D-1534-10		19629058	28500837	68	11641											
ATF4	468	hgsc.bcm.edu	37	22	39917910	39917912	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	-	39917912	GTG	-	39917910	7	5	183	1	0	1	0	1	0	0	0	0	1082	1377	48	0	365	0	ATF4	22	39917910	In_Frame_Del	DEL	GTG	TCGA-B0-5692-01A-11D-1534-10		39917910	11386656	69	11642											
SMC1B	27127	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45779436	45779436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	G	45779436	T	G	45779436	3	3	183	1	0	0	0	0	1	0	0	0	14795	1609	56	5	1794	5	SMC1B	22	45779436	Missense_Mutation	SNP	T	TCGA-B0-5692-01A-11D-1534-10	5861526	45779436	5525130	70	11643											
CXorf66	347487	hgsc.bcm.edu;ucsc.edu	37	X	139038512	139038512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5692-01A-11D-1534-10	TCGA-B0-5692-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af40135-8357-40b7-b711-478633a70f97	6758416d-3232-455a-9b9f-bd0e98caceeb	T	139038512	G	T	139038512	3	4	183	1	0	0	0	0	1	0	0	0	4120	1000	35	4	460	4	CXorf66	23	139038512	Missense_Mutation	SNP	G	TCGA-B0-5692-01A-11D-1534-10		139038512	16232048	71	11644											
LRRC40	55631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	70618119	70618119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	C	70618119	A	C	70618119	3	2	184	1	0	0	0	0	1	0	0	0	9005	304	11	5	388	5	LRRC40	1	70618119	Missense_Mutation	SNP	A	TCGA-B0-5693-01A-11D-1534-10		70618119	178632502	1	11645											
CCDC18	343099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	93649561	93649561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	93649561	A	G	93649561	3	3	184	1	0	0	0	0	1	0	0	0	2796	449	16	3	525	3	CCDC18	1	93649561	Missense_Mutation	SNP	A	TCGA-B0-5693-01A-11D-1534-10	23031442	93649561	155601060	2	11646											
TOR3A	64222	broad.mit.edu;hgsc.bcm.edu	37	1	179057120	179057120	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	C	179057120	G	C	179057120	3	2	184	1	0	0	0	0	1	0	0	0	16388	933	33	4	728	4	TOR3A	1	179057120	Missense_Mutation	SNP	G	TCGA-B0-5693-01A-11D-1534-10	85407559	179057120	70193501	3	11647											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179398617	179398617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	C	179398617	T	C	179398617	3	2	184	1	0	0	0	0	1	0	0	0	16747	1609	56	3	5274	3	TTN	2	179398617	Missense_Mutation	SNP	T	TCGA-B0-5693-01A-11D-1534-10		179398617	63800756	4	11648											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188294	10188295	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	10188295	-	T	10188294	7	5	184	1	0	1	1	0	0	0	0	0	17174	681	24	0	443	0	VHL	3	10188294	Frame_Shift_Ins	INS	-	TCGA-B0-5693-01A-11D-1534-10		10188294	187834136	5	11649											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52649440	52649440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	-	52649440	T	-	52649440	7	5	184	1	0	1	0	1	0	0	0	0	11498	1635	57	0	3113	0	PBRM1	3	52649440	Frame_Shift_Del	DEL	T	TCGA-B0-5693-01A-11D-1534-10	42461146	52649440	145372990	6	11650											
CGGBP1	8545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	88104822	88104822	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	88104822	C	G	88104822	3	3	184	1	0	0	0	0	1	0	0	0	3304	565	20	4	202	4	CGGBP1	3	88104822	Missense_Mutation	SNP	C	TCGA-B0-5693-01A-11D-1534-10	35455382	88104822	109917608	7	11651											
CCDC54	84692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	107097368	107097368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	107097368	A	G	107097368	3	3	184	1	0	0	0	0	1	0	0	0	2826	130	5	3	936	3	CCDC54	3	107097368	Missense_Mutation	SNP	A	TCGA-B0-5693-01A-11D-1534-10	18992546	107097368	90925062	8	11652											
C3orf1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	119242475	119242475	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	119242475	G	T	119242475	4	4	184	1	0	0	0	0	0	1	0	0	2208	1291	45	4	756	4	C3orf1	3	119242475	Nonsense_Mutation	SNP	G	TCGA-B0-5693-01A-11D-1534-10	12145107	119242475	78779955	9	11653											
MUC20	200958	broad.mit.edu	37	3	195452619	195452619	+	Missense_Mutation	SNP	C	T	T	rs28549850	bycluster;byfrequency	TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	195452619	T	T	195452619	3	4	184	1	0	0	0	0	1	0	0	0	9983	754	26	2		2	MUC20	3	195452619	Missense_Mutation	SNP	C	TCGA-B0-5693-01A-11D-1534-10	76210144	195452619	2569811	10	11654											
FBXL17	64839	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	107703606	107703606	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	107703606	C	G	107703606	3	3	184	1	0	0	0	0	1	0	0	0	5720	507	18	4	1095	4	FBXL17	5	107703606	Missense_Mutation	SNP	C	TCGA-B0-5693-01A-11D-1534-10		107703606	73211654	11	11655											
YTHDC2	64848	broad.mit.edu;hgsc.bcm.edu	37	5	112899759	112899759	+	Silent	SNP	T	T	C	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	C	112899759	T	C	112899759	2	2	184	1	0	0	0	0	0	0	0	1	17509	1509	53	3		3	YTHDC2	5	112899759	Silent	SNP	T	TCGA-B0-5693-01A-11D-1534-10	5196153	112899759	68015501	12	11656											
ADCY1	107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	45725770	45725770	+	Silent	SNP	G	G	A	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	A	45725770	G	A	45725770	2	1	184	1	0	0	0	0	0	0	0	1	292	1132	40	1		1	ADCY1	7	45725770	Silent	SNP	G	TCGA-B0-5693-01A-11D-1534-10		45725770	113412893	13	11657											
WBSCR27	155368	hgsc.bcm.edu	37	7	73249165	73249165	+	Missense_Mutation	SNP	T	T	A	rs13246460	bycluster;byfrequency;by1000genomes	TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	A	73249165	T	A	73249165	3	1	184	1	0	0	0	0	1	0	0	0	17278	1550	54	5	95	5	WBSCR27	7	73249165	Missense_Mutation	SNP	T	TCGA-B0-5693-01A-11D-1534-10	27523395	73249165	85889498	14	11658											
FAM91A1	157769	hgsc.bcm.edu;ucsc.edu	37	8	124792237	124792237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	-	124792237	C	-	124792237	7	5	184	1	0	1	0	1	0	0	0	0	5658	739	26	0	588	0	FAM91A1	8	124792237	Frame_Shift_Del	DEL	C	TCGA-B0-5693-01A-11D-1534-10		124792237	21571785	15	11659											
UBQLN1	29979	broad.mit.edu;ucsc.edu	37	9	86276810	86276810	+	Silent	SNP	G	C	C	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	C	86276810	C	C	86276810	2	2	184	1	0	0	0	0	0	0	0	1	16908	1277	45	4		4	UBQLN1	9	86276810	Silent	SNP	G	TCGA-B0-5693-01A-11D-1534-10		86276810	54936621	16	11660											
CKS2	1164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	91931300	91931300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	91931300	T	G	91931300	3	3	184	1	0	0	0	0	1	0	0	0	3455	1609	56	5	210	5	CKS2	9	91931300	Missense_Mutation	SNP	T	TCGA-B0-5693-01A-11D-1534-10	5654490	91931300	49282131	17	11661											
PALM2-AKAP2	445815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	112918733	112918733	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	112918733	G	T	112918733	4	4	184	1	0	0	0	0	0	1	0	0	11417	1291	45	4	3164	4	PALM2-AKAP2	9	112918733	Nonsense_Mutation	SNP	G	TCGA-B0-5693-01A-11D-1534-10	20987433	112918733	28294698	18	11662											
TRDMT1	1787	broad.mit.edu	37	10	17195591	17195591	+	Silent	SNP	T	C	C	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	C	17195591	C	C	17195591	2	2	184	1	0	0	0	0	0	0	0	1	16479	1722	60	3		3	TRDMT1	10	17195591	Silent	SNP	T	TCGA-B0-5693-01A-11D-1534-10		17195591	118339156	19	11663											
PCDH15	65217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	55587279	55587279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	55587279	C	T	55587279	3	4	184	1	0	0	0	0	1	0	0	0	11518	884	31	1	3253	1	PCDH15	10	55587279	Missense_Mutation	SNP	C	TCGA-B0-5693-01A-11D-1534-10	38391688	55587279	79947468	20	11664											
NHLRC2	374354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	115614767	115614767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	A	115614767	G	A	115614767	3	1	184	1	0	0	0	0	1	0	0	0	10413	1174	41	2	138	2	NHLRC2	10	115614767	Missense_Mutation	SNP	G	TCGA-B0-5693-01A-11D-1534-10	60027488	115614767	19919980	21	11665											
MEN1	4221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64573234	64573234	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	-	64573234	T	-	64573234	7	5	184	1	0	1	0	1	0	0	0	0	9479	1638	57	0	786	0	MEN1	11	64573234	Frame_Shift_Del	DEL	T	TCGA-B0-5693-01A-11D-1534-10		64573234	70433282	22	11666											
CATSPER1	117144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65792685	65792685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	65792685	T	G	65792685	3	3	184	1	0	0	0	0	1	0	0	0	2689	1841	64	5	1224	5	CATSPER1	11	65792685	Missense_Mutation	SNP	T	TCGA-B0-5693-01A-11D-1534-10	1219451	65792685	69213831	23	11667											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	103229065	103229065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	103229065	A	G	103229065	3	3	184	1	0	0	0	0	1	0	0	0	4848	101	4	3	12489	3	DYNC2H1	11	103229065	Missense_Mutation	SNP	A	TCGA-B0-5693-01A-11D-1534-10	37436380	103229065	31777451	24	11668											
HSPA8	3312	broad.mit.edu;hgsc.bcm.edu	37	11	122931975	122931975	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	122931975	C	G	122931975	3	3	184	1	0	0	0	0	1	0	0	0	7423	478	17	4	1914	4	HSPA8	11	122931975	Missense_Mutation	SNP	C	TCGA-B0-5693-01A-11D-1534-10	19702910	122931975	12074541	25	11669											
CCDC91	55297	broad.mit.edu;ucsc.edu	37	12	28636996	28636996	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	28636996	T	T	28636996	3	4	184	1	0	0	0	0	1	0	0	0	2872	991	35	4	1155	4	CCDC91	12	28636996	Missense_Mutation	SNP	G	TCGA-B0-5693-01A-11D-1534-10		28636996	105214899	26	11670											
GJB6	10804	broad.mit.edu;hgsc.bcm.edu	37	13	20797320	20797320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	20797320	G	T	20797320	3	4	184	1	0	0	0	0	1	0	0	0	6419	1136	40	4	489	4	GJB6	13	20797320	Missense_Mutation	SNP	G	TCGA-B0-5693-01A-11D-1534-10		20797320	94372558	27	11671											
ACTN1	87	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	69356966	69356966	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	69356966	T	G	69356966	3	3	184	1	0	0	0	0	1	0	0	0	204	1551	54	5	1668	5	ACTN1	14	69356966	Missense_Mutation	SNP	T	TCGA-B0-5693-01A-11D-1534-10		69356966	37992574	28	11672											
VPS18	57617	broad.mit.edu	37	15	41191988	41191988	+	Silent	SNP	A	C	C	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	C	41191988	C	C	41191988	2	2	184	1	0	0	0	0	0	0	0	1	17206	146	6	5		5	VPS18	15	41191988	Silent	SNP	A	TCGA-B0-5693-01A-11D-1534-10		41191988	61339404	29	11673											
ITGAM	3684	hgsc.bcm.edu;ucsc.edu	37	16	31309149	31309149	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	-	31309149	G	-	31309149	7	5	184	1	0	1	0	1	0	0	0	0	7894	1335	47	0	1638	0	ITGAM	16	31309149	Frame_Shift_Del	DEL	G	TCGA-B0-5693-01A-11D-1534-10		31309149	59045604	30	11674											
ZC3H18	124245	broad.mit.edu;hgsc.bcm.edu	37	16	88688681	88688681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	A	88688681	C	A	88688681	3	1	184	1	0	0	0	0	1	0	0	0	17580	623	22	4	1582	4	ZC3H18	16	88688681	Missense_Mutation	SNP	C	TCGA-B0-5693-01A-11D-1534-10	57379532	88688681	1666072	31	11675											
AMAC1L3	0	hgsc.bcm.edu	37	17	7385682	7385682	+	Missense_Mutation	SNP	G	G	A	rs143401129		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	A	7385682	G	A	7385682	3	1	184	1	0	0	0	0	1	0	0	0	561	1087	38	1	385	1	AMAC1L3	17	7385682	Missense_Mutation	SNP	G	TCGA-B0-5693-01A-11D-1534-10		7385682	73809528	32	11676											
MAP2K3	5606	hgsc.bcm.edu	37	17	21215483	21215483	+	Silent	SNP	C	C	T	rs55935757	bycluster;byfrequency;by1000genomes	TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	21215483	C	T	21215483	2	4	184	1	0	0	0	0	0	0	0	1	9245	547	19	1		1	MAP2K3	17	21215483	Silent	SNP	C	TCGA-B0-5693-01A-11D-1534-10	13829801	21215483	59979727	33	11677											
PSMD11	5717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30806900	30806900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	30806900	C	T	30806900	3	4	184	1	0	0	0	0	1	0	0	0	12704	855	30	2	1112	2	PSMD11	17	30806900	Missense_Mutation	SNP	C	TCGA-B0-5693-01A-11D-1534-10	9591417	30806900	50388310	34	11678											
CDK12	51755	broad.mit.edu;hgsc.bcm.edu	37	17	37681129	37681129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	A	37681129	G	A	37681129	3	1	184	1	0	0	0	0	1	0	0	0	3130	1174	41	2	3344	2	CDK12	17	37681129	Missense_Mutation	SNP	G	TCGA-B0-5693-01A-11D-1534-10	6874229	37681129	43514081	35	11679											
KIAA1267	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	44116407	44116407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	C	44116407	G	C	44116407	3	2	184	1	0	0	0	0	1	0	0	0	8226	942	33	4	967	4	KIAA1267	17	44116407	Missense_Mutation	SNP	G	TCGA-B0-5693-01A-11D-1534-10	6435278	44116407	37078803	36	11680											
TCEB3C	162699	broad.mit.edu	37	18	44554961	44554961	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	44554961	T	T	44554961	3	4	184	1	0	0	0	0	1	0	0	0	15695	652	23	1	2034	1	TCEB3C	18	44554961	Missense_Mutation	SNP	C	TCGA-B0-5693-01A-11D-1534-10		44554961	33522287	37	11681											
FECH	2235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	55233773	55233773	+	Silent	SNP	A	A	G	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	G	55233773	A	G	55233773	2	3	184	1	0	0	0	0	0	0	0	1	5815	59	3	3		3	FECH	18	55233773	Silent	SNP	A	TCGA-B0-5693-01A-11D-1534-10	10678812	55233773	22843475	38	11682											
CPXM1	56265	broad.mit.edu	37	20	2779142	2779142	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	C	2779142	C	C	2779142	3	2	184	1	0	0	0	0	1	0	0	0	3839	1522	53	3	1870	3	CPXM1	20	2779142	Missense_Mutation	SNP	T	TCGA-B0-5693-01A-11D-1534-10		2779142	60246378	39	11683											
PCDH19	57526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	99551562	99551562	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	-	99551562	C	-	99551562	7	5	184	1	0	1	0	1	0	0	0	0	11521	864	30	0	290	0	PCDH19	23	99551562	Frame_Shift_Del	DEL	C	TCGA-B0-5693-01A-11D-1534-10		99551562	55718998	40	11684											
PNMA5	114824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	152159503	152159503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5693-01A-11D-1534-10	TCGA-B0-5693-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be92ee16-6288-46c0-aaa7-7a27020cd7ca	51df4667-989b-4611-b869-3d8046d76232	T	152159503	C	T	152159503	3	4	184	1	0	0	0	0	1	0	0	0	12163	507	18	2	710	2	PNMA5	23	152159503	Missense_Mutation	SNP	C	TCGA-B0-5693-01A-11D-1534-10	52607941	152159503	3111057	41	11685											
CLCNKA	1187	broad.mit.edu;hgsc.bcm.edu	37	1	16353083	16353083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	16353083	G	A	16353083	3	1	185	1	0	0	0	0	1	0	0	0	3471	1087	38	1	569	1	CLCNKA	1	16353083	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10		16353083	232897538	1	11686											
MEAF6	64769	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	37975131	37975131	+	Silent	SNP	G	G	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	37975131	G	A	37975131	2	1	185	1	0	0	0	0	0	0	0	1	9428	1310	46	2		2	MEAF6	1	37975131	Silent	SNP	G	TCGA-B0-5694-01A-11D-1534-10	21622048	37975131	211275490	2	11687											
SELENBP1	8991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151342244	151342244	+	Silent	SNP	A	A	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	151342244	A	C	151342244	2	2	185	1	0	0	0	0	0	0	0	1	14027	434	15	5		5	SELENBP1	1	151342244	Silent	SNP	A	TCGA-B0-5694-01A-11D-1534-10	113367113	151342244	97908377	3	11688											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	185984500	185984500	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	185984500	G	C	185984500	3	2	185	1	0	0	0	0	1	0	0	0	7227	971	34	4	4962	4	HMCN1	1	185984500	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	34642256	185984500	63266121	4	11689											
TLR5	7100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223285445	223285445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	223285445	G	A	223285445	3	1	185	1	0	0	0	0	1	0	0	0	15966	1377	48	2	1651	2	TLR5	1	223285445	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	37300945	223285445	25965176	5	11690											
OTOF	9381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	26698883	26698883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	26698883	C	A	26698883	3	1	185	1	0	0	0	0	1	0	0	0	11310	797	28	4	3380	4	OTOF	2	26698883	Missense_Mutation	SNP	C	TCGA-B0-5694-01A-11D-1534-10		26698883	216500490	6	11691											
ALK	238	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	29917822	29917822	+	Missense_Mutation	SNP	G	G	C	rs56116528	alternate_allele	TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	29917822	G	C	29917822	3	2	185	1	0	0	0	0	1	0	0	0	525	1252	44	4	4124	4	ALK	2	29917822	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	3218939	29917822	213281551	7	11692											
MXD1	4084	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	70148882	70148882	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	70148882	A	-	70148882	7	5	185	1	0	1	0	1	0	0	0	0	10006	246	9	0	198	0	MXD1	2	70148882	Frame_Shift_Del	DEL	A	TCGA-B0-5694-01A-11D-1534-10	40231060	70148882	173050491	8	11693											
SLC35F5	80255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	114500419	114500419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	114500419	C	A	114500419	3	1	185	1	0	0	0	0	1	0	0	0	14605	594	21	4	1007	4	SLC35F5	2	114500419	Missense_Mutation	SNP	C	TCGA-B0-5694-01A-11D-1534-10	44351537	114500419	128698954	9	11694											
XIRP2	129446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	167760331	167760331	+	Silent	SNP	C	C	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	167760331	C	T	167760331	2	4	185	1	0	0	0	0	0	0	0	1	17442	610	22	2		2	XIRP2	2	167760331	Silent	SNP	C	TCGA-B0-5694-01A-11D-1534-10	53259912	167760331	75439042	10	11695											
FKBP7	51661	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179341870	179341870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	179341870	T	G	179341870	3	3	185	1	0	0	0	0	1	0	0	0	5920	1464	51	5	388	5	FKBP7	2	179341870	Missense_Mutation	SNP	T	TCGA-B0-5694-01A-11D-1534-10	11581539	179341870	63857503	11	11696											
ATIC	471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	216184411	216184411	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	216184411	G	T	216184411	4	4	185	1	0	0	0	0	0	1	0	0	1105	943	33	4	261	4	ATIC	2	216184411	Nonsense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	36842541	216184411	27014962	12	11697											
XIRP1	165904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	39229862	39229862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	39229862	C	T	39229862	3	4	185	1	0	0	0	0	1	0	0	0	17441	623	22	2	4460	2	XIRP1	3	39229862	Missense_Mutation	SNP	C	TCGA-B0-5694-01A-11D-1534-10		39229862	158792568	13	11698											
PBRM1	55193	broad.mit.edu;ucsc.edu	37	3	52692235	52692235	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	52692235	A	A	52692235	4	1	185	1	0	0	0	0	0	1	0	0	11498	1299	45	2	4379	2	PBRM1	3	52692235	Nonsense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	13462373	52692235	145330195	14	11699											
NMNAT3	349565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	139279898	139279898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	139279898	G	T	139279898	3	4	185	1	0	0	0	0	1	0	0	0	10507	1261	44	4	49	4	NMNAT3	3	139279898	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	86587663	139279898	58742532	15	11700											
EIF4A2	1974	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186505633	186505633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	186505633	T	G	186505633	3	3	185	1	0	0	0	0	1	0	0	0	5027	1490	52	5	1079	5	EIF4A2	3	186505633	Missense_Mutation	SNP	T	TCGA-B0-5694-01A-11D-1534-10	47225735	186505633	11516797	16	11701											
TMEM44	93109	broad.mit.edu	37	3	194338403	194338403	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	194338403	C	C	194338403	3	2	185	1	0	0	0	0	1	0	0	0	16180	1095	38	4	770	4	TMEM44	3	194338403	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	7832770	194338403	3684027	17	11702											
HHIP	64399	broad.mit.edu	37	4	145568088	145568088	+	Silent	SNP	A	C	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	145568088	C	C	145568088	2	2	185	1	0	0	0	0	0	0	0	1	7099	407	15	5		5	HHIP	4	145568088	Silent	SNP	A	TCGA-B0-5694-01A-11D-1534-10		145568088	45586188	18	11703											
FAM81B	153643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	94783997	94783997	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	94783997	G	C	94783997	3	2	185	1	0	0	0	0	1	0	0	0	5636	943	33	4	1088	4	FAM81B	5	94783997	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10		94783997	86131263	19	11704											
ZNF608	57507	broad.mit.edu	37	5	124079966	124079966	+	Silent	SNP	C	G	G	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	124079966	G	G	124079966	2	3	185	1	0	0	0	0	0	0	0	1	18046	610	22	4		4	ZNF608	5	124079966	Silent	SNP	C	TCGA-B0-5694-01A-11D-1534-10	29295969	124079966	56835294	20	11705											
FCHSD1	89848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141028860	141028860	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	141028860	G	A	141028860	4	1	185	1	0	0	0	0	0	1	0	0	5796	1357	47	2	1741	2	FCHSD1	5	141028860	Nonsense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	16948894	141028860	39886400	21	11706											
G3BP1	10146	hgsc.bcm.edu;ucsc.edu	37	5	151183616	151183617	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	151183617	-	T	151183616	7	5	185	1	0	1	1	0	0	0	0	0	6148	320	12	0	1407	0	G3BP1	5	151183616	Frame_Shift_Ins	INS	-	TCGA-B0-5694-01A-11D-1534-10	10154756	151183616	29731644	22	11707											
CCHCR1	54535	broad.mit.edu	37	6	31112818	31112826	+	In_Frame_Del	DEL	CCACCTTGC	-	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	CCACCTTGC	CCACCTTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	31112826	-	-	31112818	7	5	185	1	0	1	0	1	0	0	0	0	2879	739	26	0	726	0	CCHCR1	6	31112818	In_Frame_Del	DEL	CCACCTTGC	TCGA-B0-5694-01A-11D-1534-10		31112818	140002249	23	11708											
TTBK1	84630	hgsc.bcm.edu	37	6	43221356	43221356	+	Silent	SNP	G	G	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	43221356	G	T	43221356	2	4	185	1	0	0	0	0	0	0	0	1	16688	1074	38	4		4	TTBK1	6	43221356	Silent	SNP	G	TCGA-B0-5694-01A-11D-1534-10	12108538	43221356	127893711	24	11709											
GPR110	266977	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46969278	46969278	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	46969278	T	-	46969278	7	5	185	1	0	1	0	1	0	0	0	0	6634	1722	60	0	121	0	GPR110	6	46969278	Frame_Shift_Del	DEL	T	TCGA-B0-5694-01A-11D-1534-10	3747922	46969278	124145789	25	11710											
RIMS1	22999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	72960119	72960119	+	Silent	SNP	T	T	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	72960119	T	A	72960119	2	1	185	1	0	0	0	0	0	0	0	1	13380	1654	58	5		5	RIMS1	6	72960119	Silent	SNP	T	TCGA-B0-5694-01A-11D-1534-10	25990841	72960119	98154948	26	11711											
MICAL1	64780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	109769530	109769530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	109769530	C	A	109769530	3	1	185	1	0	0	0	0	1	0	0	0	9576	912	32	4	1524	4	MICAL1	6	109769530	Missense_Mutation	SNP	C	TCGA-B0-5694-01A-11D-1534-10	36809411	109769530	61345537	27	11712											
VNN1	8876	hgsc.bcm.edu	37	6	133015270	133015272	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	133015272	GTT	-	133015270	7	5	185	1	0	1	0	1	0	0	0	0	17194	1020	36	0	1168	0	VNN1	6	133015270	In_Frame_Del	DEL	GTT	TCGA-B0-5694-01A-11D-1534-10	23245740	133015270	38099797	28	11713											
STK31	56164	broad.mit.edu	37	7	23749854	23749854	+	5'UTR	SNP	C	T	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	23749854	T	T	23749854	1	4	185	0	1	0	0	0	0	0	0	0	15308	783	27	1		1	STK31	7	23749854	5'UTR	SNP	C	TCGA-B0-5694-01A-11D-1534-10		23749854	135388809	29	11714											
POLM	27434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	44118355	44118355	+	Missense_Mutation	SNP	C	C	A	rs151259046	alternate_allele	TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	44118355	C	A	44118355	3	1	185	1	0	0	0	0	1	0	0	0	12213	681	24	4	814	4	POLM	7	44118355	Missense_Mutation	SNP	C	TCGA-B0-5694-01A-11D-1534-10	20368501	44118355	115020308	30	11715											
AKAP9	10142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	91632376	91632376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	91632376	A	T	91632376	3	4	185	1	0	0	0	0	1	0	0	0	459	101	4	5	3175	5	AKAP9	7	91632376	Missense_Mutation	SNP	A	TCGA-B0-5694-01A-11D-1534-10	47514021	91632376	67506287	31	11716											
NPBWR1	2831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	53853305	53853305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	53853305	C	A	53853305	3	1	185	1	0	0	0	0	1	0	0	0	10575	623	22	4	840	4	NPBWR1	8	53853305	Missense_Mutation	SNP	C	TCGA-B0-5694-01A-11D-1534-10		53853305	92510717	32	11717											
ZNF462	58499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	109689533	109689533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	109689533	T	C	109689533	3	2	185	1	0	0	0	0	1	0	0	0	17938	1754	61	3	3346	3	ZNF462	9	109689533	Missense_Mutation	SNP	T	TCGA-B0-5694-01A-11D-1534-10		109689533	31523898	33	11718											
KIAA0913	0	hgsc.bcm.edu;ucsc.edu	37	10	75557166	75557168	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	75557168	AAC	-	75557166	7	5	185	1	0	1	0	1	0	0	0	0	8207	11	1	0	3535	0	KIAA0913	10	75557166	In_Frame_Del	DEL	AAC	TCGA-B0-5694-01A-11D-1534-10		75557166	59977581	34	11719											
C10orf129	142827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96954310	96954310	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	96954310	A	T	96954310	3	4	185	1	0	0	0	0	1	0	0	0	1595	449	16	5	70	5	C10orf129	10	96954310	Missense_Mutation	SNP	A	TCGA-B0-5694-01A-11D-1534-10	21397144	96954310	38580437	35	11720											
SFXN4	119559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	120900805	120900805	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	120900805	T	A	120900805	3	1	185	1	0	0	0	0	1	0	0	0	14210	1838	64	5	54	5	SFXN4	10	120900805	Missense_Mutation	SNP	T	TCGA-B0-5694-01A-11D-1534-10	23946495	120900805	14633942	36	11721											
TUBGCP2	10844	broad.mit.edu;hgsc.bcm.edu	37	10	135101707	135101707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	135101707	G	A	135101707	3	1	185	1	0	0	0	0	1	0	0	0	16778	1058	37	1	1092	1	TUBGCP2	10	135101707	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	14200902	135101707	433040	37	11722											
NLRP6	171389	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	285235	285235	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	285235	T	A	285235	3	1	185	1	0	0	0	0	1	0	0	0	10488	1432	50	5	2640	5	NLRP6	11	285235	Missense_Mutation	SNP	T	TCGA-B0-5694-01A-11D-1534-10		285235	134721281	38	11723											
FAM111A	63901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	58920102	58920102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	58920102	A	G	58920102	3	3	185	1	0	0	0	0	1	0	0	0	5403	15	1	3	967	3	FAM111A	11	58920102	Missense_Mutation	SNP	A	TCGA-B0-5694-01A-11D-1534-10	58634867	58920102	76086414	39	11724											
FEN1	2237	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61563635	61563636	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	AC	61563636	-	AC	61563635	7	5	185	1	0	1	1	0	0	0	0	0	5819	1638	57	0	804	0	FEN1	11	61563635	Frame_Shift_Ins	INS	-	TCGA-B0-5694-01A-11D-1534-10	2643533	61563635	73442881	40	11725											
ODZ4	0	hgsc.bcm.edu	37	11	78523290	78523291	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	78523291	-	C	78523290	7	5	185	1	0	1	1	0	0	0	0	0	10844	1792	62	0	6538	0	ODZ4	11	78523290	Frame_Shift_Ins	INS	-	TCGA-B0-5694-01A-11D-1534-10	16959655	78523290	56483226	41	11726											
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49440459	49440459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	49440459	T	A	49440459	3	1	185	1	0	0	0	0	1	0	0	0	9628	1522	53	5	12422	5	MLL2	12	49440459	Missense_Mutation	SNP	T	TCGA-B0-5694-01A-11D-1534-10		49440459	84411436	42	11727											
IKBIP	121457	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	99007799	99007799	+	Missense_Mutation	SNP	A	A	G	rs142312833	byfrequency	TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	99007799	A	G	99007799	3	3	185	1	0	0	0	0	1	0	0	0	7616	391	14	3	439	3	IKBIP	12	99007799	Missense_Mutation	SNP	A	TCGA-B0-5694-01A-11D-1534-10	49567340	99007799	34844096	43	11728											
DNAH10	196385	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124408962	124408962	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	124408962	C	-	124408962	7	5	185	1	0	1	0	1	0	0	0	0	4600	827	29	0	11657	0	DNAH10	12	124408962	Frame_Shift_Del	DEL	C	TCGA-B0-5694-01A-11D-1534-10	25401163	124408962	9442933	44	11729											
PRPF39	55015	broad.mit.edu;hgsc.bcm.edu	37	14	45581684	45581684	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	45581684	A	C	45581684	3	2	185	1	0	0	0	0	1	0	0	0	12579	333	12	5	1774	5	PRPF39	14	45581684	Missense_Mutation	SNP	A	TCGA-B0-5694-01A-11D-1534-10		45581684	61767856	45	11730											
WDR25	79446	broad.mit.edu;hgsc.bcm.edu	37	14	100996232	100996232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	100996232	G	T	100996232	3	4	185	1	0	0	0	0	1	0	0	0	17294	1261	44	4	1511	4	WDR25	14	100996232	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	55414548	100996232	6353308	46	11731											
FANCI	55215	hgsc.bcm.edu;ucsc.edu	37	15	89859678	89859678	+	Silent	SNP	A	A	G	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	89859678	A	G	89859678	2	3	185	1	0	0	0	0	0	0	0	1	5676	11	1	3		3	FANCI	15	89859678	Silent	SNP	A	TCGA-B0-5694-01A-11D-1534-10		89859678	12671714	47	11732											
CLCN7	1186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1509163	1509163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	1509163	G	A	1509163	3	1	185	1	0	0	0	0	1	0	0	0	3470	1232	43	2	1873	2	CLCN7	16	1509163	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10		1509163	88845590	48	11733											
SRCAP	10847	broad.mit.edu	37	16	30750868	30750868	+	Silent	SNP	A	G	G	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	30750868	G	G	30750868	2	3	185	1	0	0	0	0	0	0	0	1	15147	407	15	3		3	SRCAP	16	30750868	Silent	SNP	A	TCGA-B0-5694-01A-11D-1534-10	29241705	30750868	59603885	49	11734											
N4BP1	9683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	48596270	48596270	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	48596270	T	G	48596270	3	3	185	1	0	0	0	0	1	0	0	0	10116	1551	54	5	2430	5	N4BP1	16	48596270	Missense_Mutation	SNP	T	TCGA-B0-5694-01A-11D-1534-10	17845402	48596270	41758483	50	11735											
MBTPS1	8720	hgsc.bcm.edu;ucsc.edu	37	16	84103636	84103636	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	84103636	T	-	84103636	7	5	185	1	0	1	0	1	0	0	0	0	9368	1493	52	0	1408	0	MBTPS1	16	84103636	Frame_Shift_Del	DEL	T	TCGA-B0-5694-01A-11D-1534-10	35507366	84103636	6251117	51	11736											
MYOCD	93649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	12647585	12647585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	12647585	A	G	12647585	3	3	185	1	0	0	0	0	1	0	0	0	10094	391	14	3	833	3	MYOCD	17	12647585	Missense_Mutation	SNP	A	TCGA-B0-5694-01A-11D-1534-10		12647585	68547625	52	11737											
UNC45B	146862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33498340	33498340	+	Splice_Site	SNP	G	G	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	33498340	G	C	33498340	5	2	185	1	0	0	0	0	0	0	1	0	17001	956	33	4	1741	4	UNC45B	17	33498340	Splice_Site	SNP	G	TCGA-B0-5694-01A-11D-1534-10	20850755	33498340	47696870	53	11738											
HNF1B	6928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36091725	36091725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	36091725	G	C	36091725	3	2	185	1	0	0	0	0	1	0	0	0	7259	1252	44	4	791	4	HNF1B	17	36091725	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	2593385	36091725	45103485	54	11739											
WIPF2	147179	broad.mit.edu;ucsc.edu	37	17	38420798	38420798	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	G	38420798	G	G	38420798	3	3	185	1	0	0	0	0	1	0	0	0	17380	63	3	3	384	3	WIPF2	17	38420798	Missense_Mutation	SNP	A	TCGA-B0-5694-01A-11D-1534-10	2329073	38420798	42774412	55	11740											
TMEM105	284186	hgsc.bcm.edu;ucsc.edu	37	17	79288241	79288241	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	79288241	C	-	79288241	7	5	185	1	0	1	0	1	0	0	0	0	16031	739	26	0	375	0	TMEM105	17	79288241	Frame_Shift_Del	DEL	C	TCGA-B0-5694-01A-11D-1534-10	40867443	79288241	1906969	56	11741											
NPC1	4864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	21140211	21140211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	21140211	C	A	21140211	3	1	185	1	0	0	0	0	1	0	0	0	10577	710	25	4	3051	4	NPC1	18	21140211	Missense_Mutation	SNP	C	TCGA-B0-5694-01A-11D-1534-10		21140211	56937037	57	11742											
C18orf21	83608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	33557546	33557546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	A	33557546	C	A	33557546	3	1	185	1	0	0	0	0	1	0	0	0	1899	738	26	4	488	4	C18orf21	18	33557546	Missense_Mutation	SNP	C	TCGA-B0-5694-01A-11D-1534-10	12417335	33557546	44519702	58	11743											
POLI	11201	hgsc.bcm.edu;ucsc.edu	37	18	51809374	51809374	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	51809374	G	-	51809374	7	5	185	1	0	1	0	1	0	0	0	0	12210	1001	35	0	986	0	POLI	18	51809374	Frame_Shift_Del	DEL	G	TCGA-B0-5694-01A-11D-1534-10	18251828	51809374	26267874	59	11744											
KISS1R	84634	broad.mit.edu	37	19	918608	918608	+	Silent	SNP	C	T	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	918608	T	T	918608	2	4	185	1	0	0	0	0	0	0	0	1	8335	518	18	2		2	KISS1R	19	918608	Silent	SNP	C	TCGA-B0-5694-01A-11D-1534-10		918608	58210375	60	11745											
JAK3	3718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17952457	17952457	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	C	17952457	G	C	17952457	3	2	185	1	0	0	0	0	1	0	0	0	7946	1357	47	4	2470	4	JAK3	19	17952457	Missense_Mutation	SNP	G	TCGA-B0-5694-01A-11D-1534-10	17033849	17952457	41176526	61	11746											
SIRPB2	284759	broad.mit.edu;hgsc.bcm.edu	37	20	1460664	1460664	+	Silent	SNP	G	G	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	1460664	G	T	1460664	2	4	185	1	0	0	0	0	0	0	0	1	14347	1103	39	4		4	SIRPB2	20	1460664	Silent	SNP	G	TCGA-B0-5694-01A-11D-1534-10		1460664	61564856	62	11747											
PARD6B	84612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	49367001	49367001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	49367001	A	T	49367001	3	4	185	1	0	0	0	0	1	0	0	0	11453	69	3	5	1105	5	PARD6B	20	49367001	Missense_Mutation	SNP	A	TCGA-B0-5694-01A-11D-1534-10	47906337	49367001	13658519	63	11748											
SON	6651	hgsc.bcm.edu	37	21	34925612	34925635	+	In_Frame_Del	DEL	GTCCTGGAGTCTTCGGCTGTGACC	GTCCTGGAGTCTTCGGCTGTGACC	-	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	GTCCTGGAGTCTTCGGCTGTGACC	GTCCTGGAGTCTTCGGCTGTGACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	-	34925635	GTCCTGGAGTCTTCGGCTGTGACC	-	34925612	7	5	185	1	0	1	0	1	0	0	0	0	14939	1377	48	0	4085	0	SON	21	34925612	In_Frame_Del	DEL	GTCCTGGAGTCTTCGGCTGTGACC	TCGA-B0-5694-01A-11D-1534-10		34925612	13204283	64	11749											
MAMLD1	10046	broad.mit.edu;hgsc.bcm.edu	37	X	149639659	149639659	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5694-01A-11D-1534-10	TCGA-B0-5694-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6edbaa05-b935-4f82-b070-8fc80ea6b609	543454fe-3924-4a76-8c1d-527e6e1c2937	T	149639659	A	T	149639659	3	4	185	1	0	0	0	0	1	0	0	0	9215	188	7	5	1824	5	MAMLD1	23	149639659	Missense_Mutation	SNP	A	TCGA-B0-5694-01A-11D-1534-10		149639659	5630901	65	11750											
TP73	7161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	3599704	3599704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	3599704	T	C	3599704	3	2	186	1	0	0	0	0	1	0	0	0	16405	1464	51	3	152	3	TP73	1	3599704	Missense_Mutation	SNP	T	TCGA-B0-5695-01A-11D-1534-10		3599704	245650917	1	11751											
KIF1B	23095	broad.mit.edu;ucsc.edu	37	1	10412718	10412718	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	10412718	A	A	10412718	3	1	186	1	0	0	0	0	1	0	0	0	8291	1291	45	2	5468	2	KIF1B	1	10412718	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	6813014	10412718	238837903	2	11752											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16260060	16260060	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	16260060	A	T	16260060	3	4	186	1	0	0	0	0	1	0	0	0	15050	304	11	5	7367	5	SPEN	1	16260060	Missense_Mutation	SNP	A	TCGA-B0-5695-01A-11D-1534-10	5847342	16260060	232990561	3	11753											
MAP7D1	55700	broad.mit.edu	37	1	36644331	36644333	+	In_Frame_Del	DEL	GGA	-	-	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	-	36644333	-	-	36644331	7	5	186	1	0	1	0	1	0	0	0	0	9274	1103	39	0	1974	0	MAP7D1	1	36644331	In_Frame_Del	DEL	GGA	TCGA-B0-5695-01A-11D-1534-10	20384271	36644331	212606290	4	11754											
HSD3B1	3283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	120050234	120050234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	120050234	G	C	120050234	3	2	186	1	0	0	0	0	1	0	0	0	7397	991	35	4	137	4	HSD3B1	1	120050234	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	83405903	120050234	129200387	5	11755											
CACYBP	27101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	174973753	174973753	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	174973753	C	T	174973753	4	4	186	1	0	0	0	0	0	1	0	0	2566	479	17	2	25	2	CACYBP	1	174973753	Nonsense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10	54923519	174973753	74276868	6	11756											
MAP4K3	8491	hgsc.bcm.edu;ucsc.edu	37	2	39564675	39564675	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	-	39564675	T	-	39564675	7	5	186	1	0	1	0	1	0	0	0	0	9268	1725	60	0	2446	0	MAP4K3	2	39564675	Frame_Shift_Del	DEL	T	TCGA-B0-5695-01A-11D-1534-10		39564675	203634698	7	11757											
PAPOLG	64895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61019416	61019416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	61019416	A	T	61019416	3	4	186	1	0	0	0	0	1	0	0	0	11438	11	1	5	1737	5	PAPOLG	2	61019416	Missense_Mutation	SNP	A	TCGA-B0-5695-01A-11D-1534-10	21454741	61019416	182179957	8	11758											
ST3GAL5	8869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	86071563	86071563	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	86071563	G	C	86071563	3	2	186	1	0	0	0	0	1	0	0	0	15230	1000	35	4	300	4	ST3GAL5	2	86071563	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	25052147	86071563	157127810	9	11759											
RAB3GAP1	22930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	135926271	135926271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	135926271	C	A	135926271	3	1	186	1	0	0	0	0	1	0	0	0	12948	739	26	4	2985	4	RAB3GAP1	2	135926271	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10	49854708	135926271	107273102	10	11760											
ATIC	471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	216211658	216211658	+	Silent	SNP	T	T	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	216211658	T	C	216211658	2	2	186	1	0	0	0	0	0	0	0	1	1105	1800	63	3		3	ATIC	2	216211658	Silent	SNP	T	TCGA-B0-5695-01A-11D-1534-10	80285387	216211658	26987715	11	11761											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191482	10191482	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	10191482	A	T	10191482	4	4	186	1	0	0	0	0	0	1	0	0	17174	247	9	5	485	5	VHL	3	10191482	Nonsense_Mutation	SNP	A	TCGA-B0-5695-01A-11D-1534-10		10191482	187830948	12	11762											
IP6K2	51447	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48732607	48732607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	48732607	G	T	48732607	3	4	186	1	0	0	0	0	1	0	0	0	7796	991	35	4	1535	4	IP6K2	3	48732607	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	38541125	48732607	149289823	13	11763											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52682446	52682462	+	Frame_Shift_Del	DEL	TGTAGCTTCCATTCTAC	TGTAGCTTCCATTCTAC	-	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	TGTAGCTTCCATTCTAC	TGTAGCTTCCATTCTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	-	52682462	TGTAGCTTCCATTCTAC	-	52682446	7	5	186	1	0	1	0	1	0	0	0	0	11498	1821	63	0	4269	0	PBRM1	3	52682446	Frame_Shift_Del	DEL	TGTAGCTTCCATTCTAC	TCGA-B0-5695-01A-11D-1534-10	3949839	52682446	145339984	14	11764											
USP38	84640	broad.mit.edu;hgsc.bcm.edu	37	4	144106648	144106648	+	Silent	SNP	G	G	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	144106648	G	A	144106648	2	1	186	1	0	0	0	0	0	0	0	1	17081	1306	46	2		2	USP38	4	144106648	Silent	SNP	G	TCGA-B0-5695-01A-11D-1534-10		144106648	47047628	15	11765											
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127673799	127673799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	127673799	T	A	127673799	3	1	186	1	0	0	0	0	1	0	0	0	5710	1783	62	5	5406	5	FBN2	5	127673799	Missense_Mutation	SNP	T	TCGA-B0-5695-01A-11D-1534-10		127673799	53241461	16	11766											
LAMA2	3908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	129588309	129588309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	129588309	C	T	129588309	3	4	186	1	0	0	0	0	1	0	0	0	8613	594	21	2	2329	2	LAMA2	6	129588309	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10		129588309	41526758	17	11767											
RSPH3	83861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	159420742	159420742	+	Silent	SNP	A	A	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	159420742	A	T	159420742	2	4	186	1	0	0	0	0	0	0	0	1	13718	378	14	5		5	RSPH3	6	159420742	Silent	SNP	A	TCGA-B0-5695-01A-11D-1534-10	29832433	159420742	11694325	18	11768											
FOXK1	221937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	4780487	4780487	+	Silent	SNP	C	C	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	4780487	C	T	4780487	2	4	186	1	0	0	0	0	0	0	0	1	6021	581	21	2		2	FOXK1	7	4780487	Silent	SNP	C	TCGA-B0-5695-01A-11D-1534-10		4780487	154358176	19	11769											
TYW1	55253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	66474585	66474585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	66474585	C	A	66474585	3	1	186	1	0	0	0	0	1	0	0	0	16830	913	32	4	303	4	TYW1	7	66474585	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10	61694098	66474585	92664078	20	11770											
FGL2	10875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	76829078	76829078	+	Silent	SNP	T	T	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	76829078	T	C	76829078	2	2	186	1	0	0	0	0	0	0	0	1	5880	1567	55	3		3	FGL2	7	76829078	Silent	SNP	T	TCGA-B0-5695-01A-11D-1534-10	10354493	76829078	82309585	21	11771											
ZKSCAN1	7586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99631591	99631591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	99631591	C	G	99631591	3	3	186	1	0	0	0	0	1	0	0	0	17698	623	22	4	1481	4	ZKSCAN1	7	99631591	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10	22802513	99631591	59507072	22	11772											
ANKRD7	56311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	117874795	117874795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	117874795	T	C	117874795	3	2	186	1	0	0	0	0	1	0	0	0	686	1522	53	3	345	3	ANKRD7	7	117874795	Missense_Mutation	SNP	T	TCGA-B0-5695-01A-11D-1534-10	18243204	117874795	41263868	23	11773											
LRGUK	136332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	133812165	133812165	+	Silent	SNP	T	T	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	133812165	T	C	133812165	2	2	186	1	0	0	0	0	0	0	0	1	8950	1538	54	3		3	LRGUK	7	133812165	Silent	SNP	T	TCGA-B0-5695-01A-11D-1534-10	15937370	133812165	25326498	24	11774											
TTC26	79989	broad.mit.edu;hgsc.bcm.edu	37	7	138822685	138822685	+	Silent	SNP	G	G	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	138822685	G	A	138822685	2	1	186	1	0	0	0	0	0	0	0	1	16706	1014	35	2		2	TTC26	7	138822685	Silent	SNP	G	TCGA-B0-5695-01A-11D-1534-10	5010520	138822685	20315978	25	11775											
LMBR1	64327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	156518213	156518213	+	Silent	SNP	A	A	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	156518213	A	G	156518213	2	3	186	1	0	0	0	0	0	0	0	1	8847	349	13	3		3	LMBR1	7	156518213	Silent	SNP	A	TCGA-B0-5695-01A-11D-1534-10	17695528	156518213	2620450	26	11776											
CLN8	2055	broad.mit.edu;ucsc.edu	37	8	1728492	1728492	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	1728492	A	A	1728492	3	1	186	1	0	0	0	0	1	0	0	0	3548	1522	53	5	626	5	CLN8	8	1728492	Missense_Mutation	SNP	T	TCGA-B0-5695-01A-11D-1534-10		1728492	144635530	27	11777											
RB1CC1	9821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	53586507	53586507	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	53586507	A	T	53586507	3	4	186	1	0	0	0	0	1	0	0	0	13112	330	12	5	3956	5	RB1CC1	8	53586507	Missense_Mutation	SNP	A	TCGA-B0-5695-01A-11D-1534-10	51858015	53586507	92777515	28	11778											
VPS13B	157680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	100847487	100847487	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	100847487	C	G	100847487	3	3	186	1	0	0	0	0	1	0	0	0	17202	681	24	4	10152	4	VPS13B	8	100847487	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10	47260980	100847487	45516535	29	11779											
PTPRD	5789	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	8500875	8500875	+	Silent	SNP	A	A	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	8500875	A	T	8500875	2	4	186	1	0	0	0	0	0	0	0	1	12812	407	15	5		5	PTPRD	9	8500875	Silent	SNP	A	TCGA-B0-5695-01A-11D-1534-10		8500875	132712556	30	11780											
NFX1	4799	broad.mit.edu	37	9	33351750	33351750	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	33351750	G	G	33351750	3	3	186	1	0	0	0	0	1	0	0	0	10394	391	14	3	2761	3	NFX1	9	33351750	Missense_Mutation	SNP	A	TCGA-B0-5695-01A-11D-1534-10	24850875	33351750	107861681	31	11781											
GFI1B	8328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	135863634	135863634	+	Missense_Mutation	SNP	G	G	T	rs145562579	alternate_allele	TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	135863634	G	T	135863634	3	4	186	1	0	0	0	0	1	0	0	0	6347	1058	37	4	299	4	GFI1B	9	135863634	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	102511884	135863634	5349797	32	11782											
GBGT1	26301	broad.mit.edu;hgsc.bcm.edu	37	9	136029453	136029453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	136029453	C	A	136029453	3	1	186	1	0	0	0	0	1	0	0	0	6279	912	32	4	492	4	GBGT1	9	136029453	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10	165819	136029453	5183978	33	11783											
PLXDC2	84898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	20106053	20106053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	20106053	G	A	20106053	3	1	186	1	0	0	0	0	1	0	0	0	12125	1377	48	2	47	2	PLXDC2	10	20106053	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10		20106053	115428694	34	11784											
SMC3	9126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	112360237	112360237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	112360237	G	C	112360237	3	2	186	1	0	0	0	0	1	0	0	0	14797	1261	44	4	2554	4	SMC3	10	112360237	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	92254184	112360237	23174510	35	11785	138	2									
SMC3	9126	broad.mit.edu;ucsc.edu	37	10	112360239	112360239	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	112360239	T	T	112360239	3	4	186	1	0	0	0	0	1	0	0	0	14797	449	16	5	2556	5	SMC3	10	112360239	Missense_Mutation	SNP	A	TCGA-B0-5695-01A-11D-1534-10	2	112360239	23174508	36	11786	138	2									
OSBPL5	114879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	3109542	3109542	+	Missense_Mutation	SNP	G	G	A	rs150730024		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	3109542	G	A	3109542	3	1	186	1	0	0	0	0	1	0	0	0	11287	1144	40	1	110	1	OSBPL5	11	3109542	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10		3109542	131896974	37	11787											
TRIM5	85363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5699642	5699642	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	5699642	G	C	5699642	3	2	186	1	0	0	0	0	1	0	0	0	16537	1261	44	4	1204	4	TRIM5	11	5699642	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	2590100	5699642	129306874	38	11788											
USH1C	10083	broad.mit.edu;ucsc.edu	37	11	17544964	17544964	+	Splice_Site	SNP	A	C	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	17544964	C	C	17544964	5	2	186	1	0	0	0	0	0	0	1	0	17046	173	6	5	2028	5	USH1C	11	17544964	Splice_Site	SNP	A	TCGA-B0-5695-01A-11D-1534-10	11845322	17544964	117461552	39	11789											
CCDC73	493860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32636393	32636393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	32636393	A	T	32636393	3	4	186	1	0	0	0	0	1	0	0	0	2848	304	11	5	1780	5	CCDC73	11	32636393	Missense_Mutation	SNP	A	TCGA-B0-5695-01A-11D-1534-10	15091429	32636393	102370123	40	11790											
EPS8	2059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	15803757	15803757	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	15803757	C	G	15803757	3	3	186	1	0	0	0	0	1	0	0	0	5196	695	24	4	1066	4	EPS8	12	15803757	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10		15803757	118048138	41	11791											
KIAA0528	0	hgsc.bcm.edu;ucsc.edu	37	12	22606900	22606900	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	-	22606900	A	-	22606900	7	5	186	1	0	1	0	1	0	0	0	0	8189	372	13	0	209	0	KIAA0528	12	22606900	Frame_Shift_Del	DEL	A	TCGA-B0-5695-01A-11D-1534-10	6803143	22606900	111244995	42	11792											
GNPTAB	79158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	102163955	102163955	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	102163955	A	T	102163955	3	4	186	1	0	0	0	0	1	0	0	0	6552	98	4	5	2690	5	GNPTAB	12	102163955	Missense_Mutation	SNP	A	TCGA-B0-5695-01A-11D-1534-10	79557055	102163955	31687940	43	11793											
HVCN1	84329	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	111089162	111089162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	111089162	T	C	111089162	3	2	186	1	0	0	0	0	1	0	0	0	7469	1696	59	3	330	3	HVCN1	12	111089162	Missense_Mutation	SNP	T	TCGA-B0-5695-01A-11D-1534-10	8925207	111089162	22762733	44	11794											
TRIP11	9321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	92470128	92470128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	92470128	G	T	92470128	3	4	186	1	0	0	0	0	1	0	0	0	16567	962	34	4	1791	4	TRIP11	14	92470128	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10		92470128	14879412	45	11795	139	2									
TRIP11	9321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	92470129	92470129	+	Silent	SNP	C	C	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	92470129	C	T	92470129	2	4	186	1	0	0	0	0	0	0	0	1	16567	796	28	2		2	TRIP11	14	92470129	Silent	SNP	C	TCGA-B0-5695-01A-11D-1534-10	1	92470129	14879411	46	11796	139	2									
HERC2	8924	broad.mit.edu;hgsc.bcm.edu	37	15	28387457	28387457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	28387457	C	A	28387457	3	1	186	1	0	0	0	0	1	0	0	0	7065	681	24	4	2949	4	HERC2	15	28387457	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10		28387457	74143935	47	11797											
MGA	23269	hgsc.bcm.edu;ucsc.edu	37	15	42003437	42003437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	-	42003437	C	-	42003437	7	5	186	1	0	1	0	1	0	0	0	0	9547	827	29	0	3000	0	MGA	15	42003437	Frame_Shift_Del	DEL	C	TCGA-B0-5695-01A-11D-1534-10	13615980	42003437	60527955	48	11798											
NEDD4	4734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	56208589	56208589	+	Silent	SNP	A	A	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	56208589	A	G	56208589	2	3	186	1	0	0	0	0	0	0	0	1	10317	389	14	3		3	NEDD4	15	56208589	Silent	SNP	A	TCGA-B0-5695-01A-11D-1534-10	14205152	56208589	46322803	49	11799											
AARS	16	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	70296355	70296355	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	-	70296355	C	-	70296355	7	5	186	1	0	1	0	1	0	0	0	0	19	739	26	0	1381	0	AARS	16	70296355	Frame_Shift_Del	DEL	C	TCGA-B0-5695-01A-11D-1534-10		70296355	20058398	50	11800											
AATK	9625	broad.mit.edu;hgsc.bcm.edu	37	17	79094705	79094705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	79094705	G	T	79094705	3	4	186	1	0	0	0	0	1	0	0	0	26	1232	43	4	1109	4	AATK	17	79094705	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10		79094705	2100505	51	11801											
EMR1	2015	hgsc.bcm.edu;ucsc.edu	37	19	6903923	6903923	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	6903923	G	C	6903923	3	2	186	1	0	0	0	0	1	0	0	0	5106	1174	41	4	790	4	EMR1	19	6903923	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10		6903923	52225060	52	11802											
LIPE	3991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42930828	42930828	+	Silent	SNP	C	C	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	42930828	C	T	42930828	2	4	186	1	0	0	0	0	0	0	0	1	8828	639	23	1		1	LIPE	19	42930828	Silent	SNP	C	TCGA-B0-5695-01A-11D-1534-10	36026905	42930828	16198155	53	11803											
SAE1	10055	hgsc.bcm.edu	37	19	47646781	47646782	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	47646782	-	T	47646781	7	5	186	1	0	1	1	0	0	0	0	0	13818	784	28	0	135	0	SAE1	19	47646781	Frame_Shift_Ins	INS	-	TCGA-B0-5695-01A-11D-1534-10	4715953	47646781	11482202	54	11804											
CA11	770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49147826	49147826	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	49147826	C	G	49147826	3	3	186	1	0	0	0	0	1	0	0	0	2514	637	22	4	871	4	CA11	19	49147826	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10	1501045	49147826	9981157	55	11805											
IZUMO1	284359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49249008	49249008	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	49249008	C	A	49249008	4	1	186	1	0	0	0	0	0	1	0	0	7940	864	30	4	979	4	IZUMO1	19	49249008	Nonsense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10	101182	49249008	9879975	56	11806											
PHACTR3	116154	broad.mit.edu;hgsc.bcm.edu	37	20	58342420	58342420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	58342420	G	A	58342420	3	1	186	1	0	0	0	0	1	0	0	0	11818	1203	42	2	739	2	PHACTR3	20	58342420	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10		58342420	4683100	57	11807											
YTHDF1	54915	broad.mit.edu;ucsc.edu	37	20	61834018	61834018	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	61834018	G	G	61834018	3	3	186	1	0	0	0	0	1	0	0	0	17510	246	9	3	413	3	YTHDF1	20	61834018	Missense_Mutation	SNP	A	TCGA-B0-5695-01A-11D-1534-10	3491598	61834018	1191502	58	11808											
CLIC6	54102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	36081036	36081036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	36081036	C	G	36081036	3	3	186	1	0	0	0	0	1	0	0	0	3532	855	30	4	1663	4	CLIC6	21	36081036	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10		36081036	12048859	59	11809											
PFKL	5211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	45742915	45742915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	45742915	G	A	45742915	3	1	186	1	0	0	0	0	1	0	0	0	11771	1261	44	2	1538	2	PFKL	21	45742915	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	9661879	45742915	2386980	60	11810											
PI4KA	5297	broad.mit.edu;hgsc.bcm.edu	37	22	21081564	21081564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	A	21081564	G	A	21081564	3	1	186	1	0	0	0	0	1	0	0	0	11880	1000	35	2	1473	2	PI4KA	22	21081564	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10		21081564	30223002	61	11811											
SF3A1	10291	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30736281	30736281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	G	30736281	C	G	30736281	3	3	186	1	0	0	0	0	1	0	0	0	14159	864	30	4	1134	4	SF3A1	22	30736281	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11D-1534-10	9654717	30736281	20568285	62	11812											
APOL5	80831	broad.mit.edu;hgsc.bcm.edu	37	22	36123112	36123112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	36123112	G	T	36123112	3	4	186	1	0	0	0	0	1	0	0	0	809	1319	46	4	1007	4	APOL5	22	36123112	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	5386831	36123112	15181454	63	11813											
VSIG1	340547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107304759	107304759	+	Silent	SNP	C	C	T	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	107304759	C	T	107304759	2	4	186	1	0	0	0	0	0	0	0	1	17234	668	24	2		2	VSIG1	23	107304759	Silent	SNP	C	TCGA-B0-5695-01A-11D-1534-10		107304759	47965801	64	11814											
THOC2	57187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	122769988	122769988	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5695-01A-11D-1534-10	TCGA-B0-5695-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0202c44b-88d5-435d-9c25-300ca96537d4	e82fdc8b-d411-410a-9b4c-f66f9077be6d	C	122769988	G	C	122769988	3	2	186	1	0	0	0	0	1	0	0	0	15877	1174	41	4	2901	4	THOC2	23	122769988	Missense_Mutation	SNP	G	TCGA-B0-5695-01A-11D-1534-10	15465229	122769988	32500572	65	11815											
VHL	7428	hgsc.bcm.edu	37	3	10183664	10183664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5695-01A-11W-1584-10	TCGA-B0-5695-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	06b449c9-8ada-46d7-b772-9898a5df5256	e82fdc8b-d411-410a-9b4c-f66f9077be6d	T	10183664	C	T	10183664	3	4	187	1	0	0	0	0	1	0	0	0	17174	623	22	2	135	2	VHL	3	10183664	Missense_Mutation	SNP	C	TCGA-B0-5695-01A-11W-1584-10		10183664	187838766	1	11816											
CA6	765	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	9019022	9019022	+	Silent	SNP	T	T	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	9019022	T	C	9019022	2	2	188	1	0	0	0	0	0	0	0	1	2523	1461	51	3		3	CA6	1	9019022	Silent	SNP	T	TCGA-B0-5696-01A-11D-1534-10		9019022	240231599	1	11817											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11217230	11217230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	11217230	C	T	11217230	3	4	188	1	0	0	0	0	1	0	0	0	9961	710	25	2	3317	2	MTOR	1	11217230	Missense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10	2198208	11217230	238033391	2	11818											
FCN3	8547	hgsc.bcm.edu;ucsc.edu	37	1	27695848	27695852	+	Frame_Shift_Del	DEL	CGGTA	CGGTA	-	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	CGGTA	CGGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	-	27695852	CGGTA	-	27695848	7	5	188	1	0	1	0	1	0	0	0	0	5800	884	31	0	124	0	FCN3	1	27695848	Frame_Shift_Del	DEL	CGGTA	TCGA-B0-5696-01A-11D-1534-10	16478618	27695848	221554773	3	11819											
SHISA4	149345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201860697	201860697	+	Splice_Site	SNP	G	G	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	201860697	G	T	201860697	5	4	188	1	0	0	0	0	0	0	1	0	14295	1275	44	4	562	4	SHISA4	1	201860697	Splice_Site	SNP	G	TCGA-B0-5696-01A-11D-1534-10	174164849	201860697	47389924	4	11820											
ALMS1	7840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	73651859	73651859	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	73651859	T	A	73651859	3	1	188	1	0	0	0	0	1	0	0	0	535	1696	59	5	1084	5	ALMS1	2	73651859	Missense_Mutation	SNP	T	TCGA-B0-5696-01A-11D-1534-10		73651859	169547514	5	11821											
FASTKD1	79675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170411720	170411720	+	Silent	SNP	T	T	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	170411720	T	C	170411720	2	2	188	1	0	0	0	0	0	0	0	1	5692	1519	53	3		3	FASTKD1	2	170411720	Silent	SNP	T	TCGA-B0-5696-01A-11D-1534-10	96759861	170411720	72787653	6	11822											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191479	10191480	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	10191480	-	T	10191479	7	5	188	1	0	1	1	0	0	0	0	0	17174	912	32	0	482	0	VHL	3	10191479	Frame_Shift_Ins	INS	-	TCGA-B0-5696-01A-11D-1534-10		10191479	187830951	7	11823											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643401	52643401	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	-	52643401	T	-	52643401	7	5	188	1	0	1	0	1	0	0	0	0	11498	1493	52	0	2465	0	PBRM1	3	52643401	Frame_Shift_Del	DEL	T	TCGA-B0-5696-01A-11D-1534-10	42451922	52643401	145379029	8	11824											
SPATA5	166378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	123868400	123868400	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	123868400	G	T	123868400	4	4	188	1	0	0	0	0	0	1	0	0	15023	1001	35	4	1505	4	SPATA5	4	123868400	Nonsense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10		123868400	67285876	9	11825											
FAM105A	54491	hgsc.bcm.edu;ucsc.edu	37	5	14601213	14601213	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	-	14601213	T	-	14601213	7	5	188	1	0	1	0	1	0	0	0	0	5391	1500	52	0	210	0	FAM105A	5	14601213	Frame_Shift_Del	DEL	T	TCGA-B0-5696-01A-11D-1534-10		14601213	166314047	10	11826											
BDP1	55814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	70856036	70856036	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	70856036	A	C	70856036	3	2	188	1	0	0	0	0	1	0	0	0	1395	43	2	5	7614	5	BDP1	5	70856036	Missense_Mutation	SNP	A	TCGA-B0-5696-01A-11D-1534-10	56254823	70856036	110059224	11	11827											
MAN2A1	4124	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	109110522	109110522	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	109110522	G	C	109110522	3	2	188	1	0	0	0	0	1	0	0	0	9221	1020	36	4	1260	4	MAN2A1	5	109110522	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	38254486	109110522	71804738	12	11828											
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127645724	127645724	+	Silent	SNP	G	G	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	127645724	G	A	127645724	2	1	188	1	0	0	0	0	0	0	0	1	5710	1311	46	2		2	FBN2	5	127645724	Silent	SNP	G	TCGA-B0-5696-01A-11D-1534-10	18535202	127645724	53269536	13	11829											
ISOC1	51015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	128441025	128441025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	128441025	G	C	128441025	3	2	188	1	0	0	0	0	1	0	0	0	7869	943	33	4	587	4	ISOC1	5	128441025	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	795301	128441025	52474235	14	11830											
ANKHD1	54882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139889648	139889648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	139889648	T	G	139889648	3	3	188	1	0	0	0	0	1	0	0	0	628	1609	56	5	4178	5	ANKHD1	5	139889648	Missense_Mutation	SNP	T	TCGA-B0-5696-01A-11D-1534-10	11448623	139889648	41025612	15	11831											
NMUR2	56923	broad.mit.edu;hgsc.bcm.edu	37	5	151784191	151784191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	151784191	G	A	151784191	3	1	188	1	0	0	0	0	1	0	0	0	10514	1115	39	1	779	1	NMUR2	5	151784191	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	11894543	151784191	29131069	16	11832											
KIAA0240	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	42832809	42832809	+	Silent	SNP	G	G	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	42832809	G	A	42832809	2	1	188	1	0	0	0	0	0	0	0	1	8171	1364	48	2		2	KIAA0240	6	42832809	Silent	SNP	G	TCGA-B0-5696-01A-11D-1534-10		42832809	128282258	17	11833											
GSTA4	2941	hgsc.bcm.edu;ucsc.edu	37	6	52850359	52850361	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	-	52850361	TTG	-	52850359	7	5	188	1	0	1	0	1	0	0	0	0	6840	1606	56	0	522	0	GSTA4	6	52850359	In_Frame_Del	DEL	TTG	TCGA-B0-5696-01A-11D-1534-10	10017550	52850359	118264708	18	11834											
MLLT4	4301	broad.mit.edu;ucsc.edu	37	6	168349093	168349093	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	168349093	G	G	168349093	3	3	188	1	0	0	0	0	1	0	0	0	9636	1696	59	5	3855	5	MLLT4	6	168349093	Missense_Mutation	SNP	T	TCGA-B0-5696-01A-11D-1534-10	115498734	168349093	2765974	19	11835											
PPP1R9A	55607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94881334	94881334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	94881334	A	T	94881334	3	4	188	1	0	0	0	0	1	0	0	0	12388	362	13	5	2599	5	PPP1R9A	7	94881334	Missense_Mutation	SNP	A	TCGA-B0-5696-01A-11D-1534-10		94881334	64257329	20	11836											
PTPRZ1	5803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	121651686	121651686	+	Silent	SNP	G	G	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	121651686	G	A	121651686	2	1	188	1	0	0	0	0	0	0	0	1	12827	1335	47	2		2	PTPRZ1	7	121651686	Silent	SNP	G	TCGA-B0-5696-01A-11D-1534-10	26770352	121651686	37486977	21	11837											
DEFA4	1669	broad.mit.edu;ucsc.edu	37	8	6793661	6793661	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	6793661	G	G	6793661	3	3	188	1	0	0	0	0	1	0	0	0	4393	304	11	3	122	3	DEFA4	8	6793661	Missense_Mutation	SNP	A	TCGA-B0-5696-01A-11D-1534-10		6793661	139570361	22	11838											
COL27A1	85301	broad.mit.edu;hgsc.bcm.edu	37	9	116931616	116931616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	116931616	C	T	116931616	3	4	188	1	0	0	0	0	1	0	0	0	3687	652	23	1	1791	1	COL27A1	9	116931616	Missense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10		116931616	24281815	23	11839											
ABL1	25	broad.mit.edu;ucsc.edu	37	9	133729596	133729596	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	133729596	G	G	133729596	3	3	188	1	0	0	0	0	1	0	0	0	92	1693	59	5	371	5	ABL1	9	133729596	Missense_Mutation	SNP	T	TCGA-B0-5696-01A-11D-1534-10	16797980	133729596	7483835	24	11840											
UPF2	26019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	12009344	12009344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	12009344	A	G	12009344	3	3	188	1	0	0	0	0	1	0	0	0	17016	372	13	3	1807	3	UPF2	10	12009344	Missense_Mutation	SNP	A	TCGA-B0-5696-01A-11D-1534-10		12009344	123525403	25	11841											
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	16957110	16957110	+	Silent	SNP	A	A	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	16957110	A	G	16957110	2	3	188	1	0	0	0	0	0	0	0	1	4053	446	16	3		3	CUBN	10	16957110	Silent	SNP	A	TCGA-B0-5696-01A-11D-1534-10	4947766	16957110	118577637	26	11842											
MLLT10	8028	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	22023041	22023041	+	Silent	SNP	A	A	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	22023041	A	C	22023041	2	2	188	1	0	0	0	0	0	0	0	1	9633	175	7	5		5	MLLT10	10	22023041	Silent	SNP	A	TCGA-B0-5696-01A-11D-1534-10	5065931	22023041	113511706	27	11843											
MYO3A	53904	broad.mit.edu;ucsc.edu	37	10	26377180	26377180	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	26377180	T	T	26377180	3	4	188	1	0	0	0	0	1	0	0	0	10083	1261	44	4	1458	4	MYO3A	10	26377180	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	4354139	26377180	109157567	28	11844											
MKI67	4288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	129906188	129906188	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	129906188	C	A	129906188	4	1	188	1	0	0	0	0	0	1	0	0	9605	922	32	4	5866	4	MKI67	10	129906188	Nonsense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10	103529008	129906188	5628559	29	11845											
FANCF	2188	broad.mit.edu	37	11	22647097	22647097	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	-	22647097	-	-	22647097	7	5	188	1	0	1	0	1	0	0	0	0	5674	507	18	0	868	0	FANCF	11	22647097	Frame_Shift_Del	DEL	C	TCGA-B0-5696-01A-11D-1534-10		22647097	112359419	30	11846											
ANO3	63982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	26558968	26558968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	26558968	T	C	26558968	3	2	188	1	0	0	0	0	1	0	0	0	698	1406	49	3	1030	3	ANO3	11	26558968	Missense_Mutation	SNP	T	TCGA-B0-5696-01A-11D-1534-10	3911871	26558968	108447548	31	11847											
OR5J2	282775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55944821	55944821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	55944821	C	G	55944821	3	3	188	1	0	0	0	0	1	0	0	0	11172	913	32	4	730	4	OR5J2	11	55944821	Missense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10	29385853	55944821	79061695	32	11848											
PDE3A	5139	broad.mit.edu;ucsc.edu	37	12	20801757	20801757	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	20801757	T	T	20801757	3	4	188	1	0	0	0	0	1	0	0	0	11644	1377	48	4	2751	4	PDE3A	12	20801757	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10		20801757	113050138	33	11849											
LIMA1	51474	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	50571222	50571222	+	Silent	SNP	T	T	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	50571222	T	C	50571222	2	2	188	1	0	0	0	0	0	0	0	1	8803	1606	56	3		3	LIMA1	12	50571222	Silent	SNP	T	TCGA-B0-5696-01A-11D-1534-10	29769465	50571222	83280673	34	11850											
SLITRK5	26050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	88329572	88329572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	88329572	G	T	88329572	3	4	188	1	0	0	0	0	1	0	0	0	14759	1281	45	4	1931	4	SLITRK5	13	88329572	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10		88329572	26840306	35	11851											
ABCC4	10257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	95859006	95859006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	95859006	G	C	95859006	3	2	188	1	0	0	0	0	1	0	0	0	55	1174	41	4	3181	4	ABCC4	13	95859006	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	7529434	95859006	19310872	36	11852											
FARP1	10160	broad.mit.edu	37	13	99092447	99092447	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	99092447	G	G	99092447	3	3	188	1	0	0	0	0	1	0	0	0	5683	188	7	3	2896	3	FARP1	13	99092447	Missense_Mutation	SNP	A	TCGA-B0-5696-01A-11D-1534-10	3233441	99092447	16077431	37	11853											
LRRC57	255252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42837393	42837393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	42837393	C	A	42837393	3	1	188	1	0	0	0	0	1	0	0	0	9020	478	17	4	167	4	LRRC57	15	42837393	Missense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10		42837393	59693999	38	11854											
ANPEP	290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90348359	90348359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	C	90348359	T	C	90348359	3	2	188	1	0	0	0	0	1	0	0	0	710	1464	51	3	2128	3	ANPEP	15	90348359	Missense_Mutation	SNP	T	TCGA-B0-5696-01A-11D-1534-10	47510966	90348359	12183033	39	11855											
IL21R	50615	broad.mit.edu;ucsc.edu	37	16	27455987	27455987	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	27455987	G	G	27455987	3	3	188	1	0	0	0	0	1	0	0	0	7678	188	7	3	650	3	IL21R	16	27455987	Missense_Mutation	SNP	A	TCGA-B0-5696-01A-11D-1534-10		27455987	62898766	40	11856											
FANCA	2175	broad.mit.edu	37	16	89877420	89877420	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	89877420	G	G	89877420	3	3	188	1	0	0	0	0	1	0	0	0	5669	652	23	4	4189	4	FANCA	16	89877420	Missense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10	62421433	89877420	477333	41	11857											
CACNA1G	8913	broad.mit.edu;hgsc.bcm.edu	37	17	48647166	48647166	+	Splice_Site	SNP	T	T	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	48647166	T	A	48647166	5	1	188	1	0	0	0	0	0	0	1	0	2546	1710	59	5	602	5	CACNA1G	17	48647166	Splice_Site	SNP	T	TCGA-B0-5696-01A-11D-1534-10		48647166	32548044	42	11858											
FAM104A	84923	broad.mit.edu	37	17	71205829	71205829	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	71205829	G	G	71205829	3	3	188	1	0	0	0	0	1	0	0	0	5389	864	30	4	164	4	FAM104A	17	71205829	Missense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10	22558663	71205829	9989381	43	11859											
SDK2	54549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	71415436	71415436	+	Silent	SNP	G	G	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	71415436	G	T	71415436	2	4	188	1	0	0	0	0	0	0	0	1	13982	1161	41	4		4	SDK2	17	71415436	Silent	SNP	G	TCGA-B0-5696-01A-11D-1534-10	209607	71415436	9779774	44	11860											
RPTOR	57521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78727975	78727975	+	Missense_Mutation	SNP	G	G	A	rs148973724		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	78727975	G	A	78727975	3	1	188	1	0	0	0	0	1	0	0	0	13678	1087	38	1	842	1	RPTOR	17	78727975	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	7312539	78727975	2467235	45	11861											
FASN	2194	broad.mit.edu;hgsc.bcm.edu	37	17	80041659	80041659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	80041659	G	A	80041659	3	1	188	1	0	0	0	0	1	0	0	0	5690	1145	40	1	2384	1	FASN	17	80041659	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	1313684	80041659	1153551	46	11862											
PIGN	23556	hgsc.bcm.edu;ucsc.edu	37	18	59821799	59821799	+	Silent	SNP	C	C	G	rs144304758	by1000genomes;alternate_allele	TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	59821799	C	G	59821799	2	3	188	1	0	0	0	0	0	0	0	1	11900	523	19	4		4	PIGN	18	59821799	Silent	SNP	C	TCGA-B0-5696-01A-11D-1534-10		59821799	18255449	47	11863											
RTTN	25914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	67742714	67742714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	67742714	G	A	67742714	3	1	188	1	0	0	0	0	1	0	0	0	13750	942	33	2	2310	2	RTTN	18	67742714	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	7920915	67742714	10334534	48	11864											
C3	718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6714022	6714022	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	6714022	C	A	6714022	4	1	188	1	0	0	0	0	0	1	0	0	2206	864	30	4	4377	4	C3	19	6714022	Nonsense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10		6714022	52414961	49	11865											
C19orf45	374877	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7573131	7573131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	7573131	C	T	7573131	3	4	188	1	0	0	0	0	1	0	0	0	1930	768	27	1	1363	1	C19orf45	19	7573131	Missense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10	859109	7573131	51555852	50	11866											
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu	37	19	31770507	31770507	+	Silent	SNP	G	G	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	31770507	G	A	31770507	2	1	188	1	0	0	0	0	0	0	0	1	16637	1103	39	1		1	TSHZ3	19	31770507	Silent	SNP	G	TCGA-B0-5696-01A-11D-1534-10	24197376	31770507	27358476	51	11867											
ALKBH6	84964	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36504275	36504275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	36504275	G	T	36504275	3	4	188	1	0	0	0	0	1	0	0	0	531	1232	43	4	715	4	ALKBH6	19	36504275	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	4733768	36504275	22624708	52	11868											
CYP2A13	1553	broad.mit.edu;hgsc.bcm.edu	37	19	41601828	41601828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	41601828	G	T	41601828	3	4	188	1	0	0	0	0	1	0	0	0	4163	1290	45	4	1501	4	CYP2A13	19	41601828	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10	5097553	41601828	17527155	53	11869											
ATP5SL	55101	hgsc.bcm.edu;ucsc.edu	37	19	41945825	41945825	+	RNA	SNP	G	G	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	41945825	G	T	41945825	1	4	188	0	1	0	0	0	0	0	0	0	1164	1131	39	4		4	ATP5SL	19	41945825	RNA	SNP	G	TCGA-B0-5696-01A-11D-1534-10	343997	41945825	17183158	54	11870											
NCOA6	23054	hgsc.bcm.edu;ucsc.edu	37	20	33337538	33337538	+	Silent	SNP	A	A	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	33337538	A	G	33337538	2	3	188	1	0	0	0	0	0	0	0	1	10240	214	8	3		3	NCOA6	20	33337538	Silent	SNP	A	TCGA-B0-5696-01A-11D-1534-10		33337538	29687982	55	11871											
GAB4	128954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	17449242	17449242	+	Silent	SNP	T	T	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	17449242	T	A	17449242	2	1	188	1	0	0	0	0	0	0	0	1	6158	1538	54	5		5	GAB4	22	17449242	Silent	SNP	T	TCGA-B0-5696-01A-11D-1534-10		17449242	33855324	56	11872											
SHANK3	85358	hgsc.bcm.edu;ucsc.edu	37	22	51143424	51143425	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	51143425	-	A	51143424	7	5	188	1	0	1	1	0	0	0	0	0	14279	477	17	0	2043	0	SHANK3	22	51143424	Frame_Shift_Ins	INS	-	TCGA-B0-5696-01A-11D-1534-10	33694182	51143424	161142	57	11873											
PRPS2	5634	broad.mit.edu;ucsc.edu	37	X	12817354	12817354	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	12817354	A	A	12817354	3	1	188	1	0	0	0	0	1	0	0	0	12590	1175	41	2	157	2	PRPS2	23	12817354	Missense_Mutation	SNP	G	TCGA-B0-5696-01A-11D-1534-10		12817354	142453206	58	11874											
ODZ1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	123838862	123838862	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	A	123838862	C	A	123838862	5	1	188	1	0	0	0	0	0	0	1	0	10841	521	18	4	7294	4	ODZ1	23	123838862	Splice_Site	SNP	C	TCGA-B0-5696-01A-11D-1534-10	111021508	123838862	31431698	59	11875											
TAZ	6901	broad.mit.edu;hgsc.bcm.edu	37	X	153649048	153649048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	G	153649048	C	G	153649048	3	3	188	1	0	0	0	0	1	0	0	0	15608	759	27	4	789	4	TAZ	23	153649048	Missense_Mutation	SNP	C	TCGA-B0-5696-01A-11D-1534-10	29810186	153649048	1621512	60	11876											
PCDH11Y	83259	broad.mit.edu	37	Y	4966255	4966255	+	Splice_Site	SNP	G	T	T	novel		TCGA-B0-5696-01A-11D-1534-10	TCGA-B0-5696-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	48b270af-07f2-4cb5-ace2-e2676ffaccd9	8473e2bb-e346-4948-bb65-0f2b7b80b6c9	T	4966255	T	T	4966255	5	4	188	1	0	0	0	0	0	0	1	0	11516	956	33	4	678	4	PCDH11Y	24	4966255	Splice_Site	SNP	G	TCGA-B0-5696-01A-11D-1534-10		4966255	54407311	61	11877											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11217290	11217290	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	11217290	T	G	11217290	3	3	189	1	0	0	0	0	1	0	0	0	9961	1406	49	5	3377	5	MTOR	1	11217290	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10		11217290	238033331	1	11878											
TXLNA	200081	hgsc.bcm.edu	37	1	32658881	32658881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	32658881	T	C	32658881	3	2	189	1	0	0	0	0	1	0	0	0	16799	1493	52	3	1261	3	TXLNA	1	32658881	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10	21441591	32658881	216591740	2	11879	140	3									
TXLNA	200081	hgsc.bcm.edu;ucsc.edu	37	1	32658884	32658885	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	32658885	-	C	32658884	7	5	189	1	0	1	1	0	0	0	0	0	16799	131	5	0	1264	0	TXLNA	1	32658884	Frame_Shift_Ins	INS	-	TCGA-B0-5697-01A-11D-1534-10	3	32658884	216591737	3	11880	140	3									
TXLNA	200081	hgsc.bcm.edu;ucsc.edu	37	1	32658886	32658887	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	-	32658887	GC	-	32658886	7	5	189	1	0	1	0	1	0	0	0	0	16799	962	34	0	1266	0	TXLNA	1	32658886	Frame_Shift_Del	DEL	GC	TCGA-B0-5697-01A-11D-1534-10	2	32658886	216591735	4	11881	140	3									
SCMH1	22955	broad.mit.edu;hgsc.bcm.edu	37	1	41579130	41579130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	41579130	G	T	41579130	3	4	189	1	0	0	0	0	1	0	0	0	13921	1252	44	4	1478	4	SCMH1	1	41579130	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	8920244	41579130	207671491	5	11882											
SLC1A7	6512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	53608095	53608095	+	Silent	SNP	C	C	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	53608095	C	T	53608095	2	4	189	1	0	0	0	0	0	0	0	1	14450	610	22	2		2	SLC1A7	1	53608095	Silent	SNP	C	TCGA-B0-5697-01A-11D-1534-10	12028965	53608095	195642526	6	11883											
CR1	1378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	207785153	207785153	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	207785153	T	A	207785153	3	1	189	1	0	0	0	0	1	0	0	0	3842	1580	55	5	6577	5	CR1	1	207785153	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10	154177058	207785153	41465468	7	11884											
RPS6KC1	26750	broad.mit.edu;ucsc.edu	37	1	213341274	213341274	+	Silent	SNP	C	T	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	213341274	T	T	213341274	2	4	189	1	0	0	0	0	0	0	0	1	13671	903	32	2		2	RPS6KC1	1	213341274	Silent	SNP	C	TCGA-B0-5697-01A-11D-1534-10	5556121	213341274	35909347	8	11885											
KMO	8564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	241723981	241723981	+	Silent	SNP	C	C	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	241723981	C	G	241723981	2	3	189	1	0	0	0	0	0	0	0	1	8431	581	21	4		4	KMO	1	241723981	Silent	SNP	C	TCGA-B0-5697-01A-11D-1534-10	28382707	241723981	7526640	9	11886											
OR2T2	401992	broad.mit.edu;hgsc.bcm.edu	37	1	248616344	248616344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	248616344	G	A	248616344	3	1	189	1	0	0	0	0	1	0	0	0	11027	1319	46	2	248	2	OR2T2	1	248616344	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	6892363	248616344	634277	10	11887											
DNMT3A	1788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	25458658	25458658	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	-	25458658	A	-	25458658	7	5	189	1	0	1	0	1	0	0	0	0	4678	304	11	0	231	0	DNMT3A	2	25458658	Frame_Shift_Del	DEL	A	TCGA-B0-5697-01A-11D-1534-10		25458658	217740715	11	11888											
DNAH6	1768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	84756081	84756081	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	84756081	T	A	84756081	3	1	189	1	0	0	0	0	1	0	0	0	4607	1403	49	5	463	5	DNAH6	2	84756081	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10	59297423	84756081	158443292	12	11889											
GLB1	2720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33087643	33087643	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	33087643	T	G	33087643	3	3	189	1	0	0	0	0	1	0	0	0	6434	1609	56	5	1024	5	GLB1	3	33087643	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10		33087643	164934787	13	11890											
SEPT11	55752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77941776	77941776	+	Silent	SNP	T	T	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	77941776	T	G	77941776	2	3	189	1	0	0	0	0	0	0	0	1	14074	1799	63	5		5	SEPT11	4	77941776	Silent	SNP	T	TCGA-B0-5697-01A-11D-1534-10		77941776	113212500	14	11891											
PTPN13	5783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87684097	87684097	+	Silent	SNP	T	T	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	87684097	T	A	87684097	2	1	189	1	0	0	0	0	0	0	0	1	12793	1538	54	5		5	PTPN13	4	87684097	Silent	SNP	T	TCGA-B0-5697-01A-11D-1534-10	9742321	87684097	103470179	15	11892											
NEUROG2	63973	hgsc.bcm.edu	37	4	113435835	113435835	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	113435835	G	C	113435835	3	2	189	1	0	0	0	0	1	0	0	0	10360	1232	43	4	25	4	NEUROG2	4	113435835	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	25751738	113435835	77718441	16	11893											
ANK2	287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	114275680	114275680	+	Missense_Mutation	SNP	C	C	T	rs148760530		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	114275680	C	T	114275680	3	4	189	1	0	0	0	0	1	0	0	0	621	478	17	2	6121	2	ANK2	4	114275680	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10	839845	114275680	76878596	17	11894											
LRBA	987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	151511868	151511868	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	151511868	C	G	151511868	3	3	189	1	0	0	0	0	1	0	0	0	8938	710	25	4	2444	4	LRBA	4	151511868	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10	37236188	151511868	39642408	18	11895											
C5orf33	0	broad.mit.edu	37	5	36241678	36241680	+	In_Frame_Del	DEL	CCA	-	-	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	CCA	CCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	-	36241680	-	-	36241678	7	5	189	1	0	1	0	1	0	0	0	0	2294	739	26	0	1153	0	C5orf33	5	36241678	In_Frame_Del	DEL	CCA	TCGA-B0-5697-01A-11D-1534-10		36241678	144673582	19	11896											
EGR1	1958	broad.mit.edu;hgsc.bcm.edu	37	5	137802682	137802682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	137802682	G	A	137802682	3	1	189	1	0	0	0	0	1	0	0	0	4973	1087	38	1	550	1	EGR1	5	137802682	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	101561004	137802682	43112578	20	11897											
ZMAT2	153527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140085215	140085215	+	Silent	SNP	G	G	T	rs143727913	byfrequency;alternate_allele	TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	140085215	G	T	140085215	2	4	189	1	0	0	0	0	0	0	0	1	17704	1132	40	4		4	ZMAT2	5	140085215	Silent	SNP	G	TCGA-B0-5697-01A-11D-1534-10	2282533	140085215	40830045	21	11898											
BTNL8	79908	broad.mit.edu;hgsc.bcm.edu	37	5	180377360	180377360	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	180377360	T	A	180377360	4	1	189	1	0	0	0	0	0	1	0	0	1569	1821	63	5	1505	5	BTNL8	5	180377360	Nonsense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10	40292145	180377360	537900	22	11899											
ZNF184	7738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27420477	27420477	+	Silent	SNP	G	G	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	27420477	G	A	27420477	2	1	189	1	0	0	0	0	0	0	0	1	17763	1281	45	2		2	ZNF184	6	27420477	Silent	SNP	G	TCGA-B0-5697-01A-11D-1534-10		27420477	143694590	23	11900											
PHF3	23469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	64421671	64421671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	64421671	A	G	64421671	3	3	189	1	0	0	0	0	1	0	0	0	11843	101	4	3	4245	3	PHF3	6	64421671	Missense_Mutation	SNP	A	TCGA-B0-5697-01A-11D-1534-10	37001194	64421671	106693396	24	11901											
DDO	8528	broad.mit.edu;hgsc.bcm.edu	37	6	110714419	110714419	+	Silent	SNP	C	C	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	110714419	C	T	110714419	2	4	189	1	0	0	0	0	0	0	0	1	4336	912	32	2		2	DDO	6	110714419	Silent	SNP	C	TCGA-B0-5697-01A-11D-1534-10	46292748	110714419	60400648	25	11902											
PARK2	5071	broad.mit.edu;ucsc.edu	37	6	161781136	161781136	+	Silent	SNP	T	C	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	161781136	C	C	161781136	2	2	189	1	0	0	0	0	0	0	0	1	11456	1625	57	3		3	PARK2	6	161781136	Silent	SNP	T	TCGA-B0-5697-01A-11D-1534-10	51066717	161781136	9333931	26	11903											
WASL	8976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	123335918	123335918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	123335918	G	A	123335918	3	1	189	1	0	0	0	0	1	0	0	0	17268	1333	46	2	906	2	WASL	7	123335918	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10		123335918	35802745	27	11904											
HEY1	23462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	80677934	80677934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	80677934	G	A	80677934	3	1	189	1	0	0	0	0	1	0	0	0	7085	1087	38	1	514	1	HEY1	8	80677934	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10		80677934	65686088	28	11905											
TRHR	7201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110131432	110131432	+	Silent	SNP	C	C	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	110131432	C	T	110131432	2	4	189	1	0	0	0	0	0	0	0	1	16492	816	29	2		2	TRHR	8	110131432	Silent	SNP	C	TCGA-B0-5697-01A-11D-1534-10	29453498	110131432	36232590	29	11906											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110487349	110487349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	110487349	A	T	110487349	3	4	189	1	0	0	0	0	1	0	0	0	11979	159	6	5	8810	5	PKHD1L1	8	110487349	Missense_Mutation	SNP	A	TCGA-B0-5697-01A-11D-1534-10	355917	110487349	35876673	30	11907											
ENPP2	5168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	120633703	120633703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	120633703	C	A	120633703	3	1	189	1	0	0	0	0	1	0	0	0	5132	710	25	4	2569	4	ENPP2	8	120633703	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10	10146354	120633703	25730319	31	11908											
JRK	8629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	143746492	143746492	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	143746492	T	A	143746492	3	1	189	1	0	0	0	0	1	0	0	0	7971	1580	55	5	820	5	JRK	8	143746492	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10	23112789	143746492	2617530	32	11909											
KLF9	687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	73027803	73027803	+	Silent	SNP	A	A	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	73027803	A	G	73027803	2	3	189	1	0	0	0	0	0	0	0	1	8360	330	12	3		3	KLF9	9	73027803	Silent	SNP	A	TCGA-B0-5697-01A-11D-1534-10		73027803	68185628	33	11910											
S1PR3	1903	broad.mit.edu;ucsc.edu	37	9	91616249	91616249	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	91616249	C	C	91616249	3	2	189	1	0	0	0	0	1	0	0	0	13808	1551	54	3	136	3	S1PR3	9	91616249	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10	18588446	91616249	49597182	34	11911											
C9orf125	0	broad.mit.edu	37	9	104239059	104239059	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	104239059	C	C	104239059	3	2	189	1	0	0	0	0	1	0	0	0	2456	1464	51	3	899	3	C9orf125	9	104239059	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10	12622810	104239059	36974372	35	11912											
DFNB31	25861	broad.mit.edu	37	9	117165567	117165567	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	117165567	T	T	117165567	3	4	189	1	0	0	0	0	1	0	0	0	4457	1203	42	4	260	4	DFNB31	9	117165567	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	12926508	117165567	24047864	36	11913											
SYT15	83849	broad.mit.edu;hgsc.bcm.edu	37	10	46962003	46962003	+	Silent	SNP	G	G	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	46962003	G	C	46962003	2	2	189	1	0	0	0	0	0	0	0	1	15483	958	34	4		4	SYT15	10	46962003	Silent	SNP	G	TCGA-B0-5697-01A-11D-1534-10		46962003	88572744	37	11914											
NCOA4	8031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	51582263	51582263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	51582263	G	A	51582263	3	1	189	1	0	0	0	0	1	0	0	0	10238	1319	46	2	631	2	NCOA4	10	51582263	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	4620260	51582263	83952484	38	11915											
LRRTM3	347731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	68687373	68687373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	68687373	C	A	68687373	3	1	189	1	0	0	0	0	1	0	0	0	9048	506	18	4	705	4	LRRTM3	10	68687373	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10	17105110	68687373	66847374	39	11916											
ZMIZ1	57178	hgsc.bcm.edu	37	10	81070821	81070822	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	81070822	-	C	81070821	7	5	189	1	0	1	1	0	0	0	0	0	17708	962	34	0	3054	0	ZMIZ1	10	81070821	Frame_Shift_Ins	INS	-	TCGA-B0-5697-01A-11D-1534-10	12383448	81070821	54463926	40	11917											
HELLS	3070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96352150	96352150	+	Splice_Site	SNP	A	A	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	96352150	A	T	96352150	5	4	189	1	0	0	0	0	0	0	1	0	7053	202	7	5	1916	5	HELLS	10	96352150	Splice_Site	SNP	A	TCGA-B0-5697-01A-11D-1534-10	15281329	96352150	39182597	41	11918											
OVCH2	341277	broad.mit.edu;ucsc.edu	37	11	7723751	7723751	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	7723751	G	G	7723751	3	3	189	1	0	0	0	0	1	0	0	0	11331	217	8	3	1325	3	OVCH2	11	7723751	Missense_Mutation	SNP	A	TCGA-B0-5697-01A-11D-1534-10		7723751	127282765	42	11919											
ZMYM5	9205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	20426164	20426164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	20426164	C	A	20426164	3	1	189	1	0	0	0	0	1	0	0	0	17715	913	32	4	1987	4	ZMYM5	13	20426164	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10		20426164	94743714	43	11920											
FREM2	341640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	39264065	39264065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	39264065	G	A	39264065	3	1	189	1	0	0	0	0	1	0	0	0	6052	1319	46	2	2586	2	FREM2	13	39264065	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	18837901	39264065	75905813	44	11921											
C14orf135	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	60587988	60587988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	60587988	G	T	60587988	3	4	189	1	0	0	0	0	1	0	0	0	1747	1348	47	4	1337	4	C14orf135	14	60587988	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10		60587988	46761552	45	11922											
KCNH5	27133	broad.mit.edu;ucsc.edu	37	14	63473094	63473094	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	63473094	T	T	63473094	4	4	189	1	0	0	0	0	0	1	0	0	8042	1372	48	4	2742	4	KCNH5	14	63473094	Nonsense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	2885106	63473094	43876446	46	11923											
RBM25	58517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	73550237	73550237	+	Silent	SNP	A	A	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	73550237	A	G	73550237	2	3	189	1	0	0	0	0	0	0	0	1	13138	69	3	3		3	RBM25	14	73550237	Silent	SNP	A	TCGA-B0-5697-01A-11D-1534-10	10077143	73550237	33799303	47	11924											
ABCD4	5826	broad.mit.edu;ucsc.edu	37	14	74763081	74763081	+	Missense_Mutation	SNP	A	G	G	rs145669133	byfrequency	TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	74763081	G	G	74763081	3	3	189	1	0	0	0	0	1	0	0	0	63	333	12	3	1383	3	ABCD4	14	74763081	Missense_Mutation	SNP	A	TCGA-B0-5697-01A-11D-1534-10	1212844	74763081	32586459	48	11925											
VPS39	23339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42454241	42454241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	42454241	C	T	42454241	3	4	189	1	0	0	0	0	1	0	0	0	17221	922	32	2	190	2	VPS39	15	42454241	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10		42454241	60077151	49	11926											
ISL2	64843	broad.mit.edu	37	15	76634124	76634124	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	76634124	T	T	76634124	3	4	189	1	0	0	0	0	1	0	0	0	7864	893	31	1	1050	1	ISL2	15	76634124	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10	34179883	76634124	25897268	50	11927											
LRRK1	79705	broad.mit.edu;hgsc.bcm.edu	37	15	101606007	101606007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	101606007	G	A	101606007	3	1	189	1	0	0	0	0	1	0	0	0	9039	1145	40	1	5487	1	LRRK1	15	101606007	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	24971883	101606007	925385	51	11928											
PIGQ	9091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	629095	629095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	629095	T	C	629095	3	2	189	1	0	0	0	0	1	0	0	0	11903	1580	55	3	1272	3	PIGQ	16	629095	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10		629095	89725658	52	11929											
NKD1	85407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	50667285	50667285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	50667285	C	T	50667285	3	4	189	1	0	0	0	0	1	0	0	0	10448	643	23	1	1044	1	NKD1	16	50667285	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10	50038190	50667285	39687468	53	11930											
MT1G	4495	broad.mit.edu;ucsc.edu	37	16	56700810	56700810	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	56700810	C	C	56700810	3	2	189	1	0	0	0	0	1	0	0	0	9908	1609	56	3	22	3	MT1G	16	56700810	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10	6033525	56700810	33653943	54	11931											
DNAH2	146754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7669721	7669721	+	Silent	SNP	G	G	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	7669721	G	A	7669721	2	1	189	1	0	0	0	0	0	0	0	1	4604	991	35	2		2	DNAH2	17	7669721	Silent	SNP	G	TCGA-B0-5697-01A-11D-1534-10		7669721	73525489	55	11932											
TAF15	8148	hgsc.bcm.edu	37	17	34171576	34171605	+	In_Frame_Del	DEL	GGTGGCTATGGTGGAGACAGAAGCAGCGGT	GGTGGCTATGGTGGAGACAGAAGCAGCGGT	-	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	GGTGGCTATGGTGGAGACAGAAGCAGCGGT	GGTGGCTATGGTGGAGACAGAAGCAGCGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	-	34171605	GGTGGCTATGGTGGAGACAGAAGCAGCGGT	-	34171576	7	5	189	1	0	1	0	1	0	0	0	0	15530	1232	43	0	1331	0	TAF15	17	34171576	In_Frame_Del	DEL	GGTGGCTATGGTGGAGACAGAAGCAGCGGT	TCGA-B0-5697-01A-11D-1534-10	26501855	34171576	47023634	56	11933											
RDM1	201299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34249624	34249624	+	Silent	SNP	C	C	T	rs112692396	alternate_allele	TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	34249624	C	T	34249624	2	4	189	1	0	0	0	0	0	0	0	1	13210	680	24	2		2	RDM1	17	34249624	Silent	SNP	C	TCGA-B0-5697-01A-11D-1534-10	78048	34249624	46945586	57	11934											
SERPINB5	5268	broad.mit.edu;hgsc.bcm.edu	37	18	61154179	61154179	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	61154179	G	C	61154179	3	2	189	1	0	0	0	0	1	0	0	0	14117	1275	44	4	175	4	SERPINB5	18	61154179	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10		61154179	16923069	58	11935											
CD209	30835	broad.mit.edu	37	19	7810629	7810629	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	7810629	A	A	7810629	3	1	189	1	0	0	0	0	1	0	0	0	2986	1057	37	1	707	1	CD209	19	7810629	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10		7810629	51318354	59	11936											
SIGLEC12	89858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52004612	52004612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	52004612	C	T	52004612	3	4	189	1	0	0	0	0	1	0	0	0	14321	690	24	2	1516	2	SIGLEC12	19	52004612	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10	44193983	52004612	7124371	60	11937											
FOXS1	2307	broad.mit.edu	37	20	30432839	30432839	+	Silent	SNP	C	T	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	30432839	T	T	30432839	2	4	189	1	0	0	0	0	0	0	0	1	6042	581	21	2		2	FOXS1	20	30432839	Silent	SNP	C	TCGA-B0-5697-01A-11D-1534-10		30432839	32592681	61	11938											
PREX1	57580	broad.mit.edu	37	20	47246011	47246011	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	G	47246011	G	G	47246011	3	3	189	1	0	0	0	0	1	0	0	0	12486	275	10	3	253	3	PREX1	20	47246011	Missense_Mutation	SNP	A	TCGA-B0-5697-01A-11D-1534-10	16813172	47246011	15779509	62	11939											
C21orf45	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	33642036	33642036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	C	33642036	T	C	33642036	3	2	189	1	0	0	0	0	1	0	0	0	2128	1512	53	3	106	3	C21orf45	21	33642036	Missense_Mutation	SNP	T	TCGA-B0-5697-01A-11D-1534-10		33642036	14487859	63	11940											
PLAC4	191585	broad.mit.edu	37	21	42551676	42551677	+	Translation_Start_Site	INS	-	A	A	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	42551677	A	A	42551676	6	5	189	1	0	1	1	0	0	0	0	0	12021	696	24	0		0	PLAC4	21	42551676	Translation_Start_Site	INS	-	TCGA-B0-5697-01A-11D-1534-10	8909640	42551676	5578219	64	11941											
GPR143	4935	hgsc.bcm.edu;ucsc.edu	37	X	9714193	9714193	+	Silent	SNP	C	C	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	9714193	C	T	9714193	2	4	189	1	0	0	0	0	0	0	0	1	6658	521	18	2		2	GPR143	23	9714193	Silent	SNP	C	TCGA-B0-5697-01A-11D-1534-10		9714193	145556367	65	11942											
IQSEC2	23096	broad.mit.edu;hgsc.bcm.edu	37	X	53284001	53284001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	T	53284001	C	T	53284001	3	4	189	1	0	0	0	0	1	0	0	0	7825	768	27	1	3402	1	IQSEC2	23	53284001	Missense_Mutation	SNP	C	TCGA-B0-5697-01A-11D-1534-10	43569808	53284001	101986559	66	11943											
GPR119	139760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129518457	129518457	+	Missense_Mutation	SNP	G	G	A	rs138209054	byfrequency;alternate_allele	TCGA-B0-5697-01A-11D-1534-10	TCGA-B0-5697-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ca4e638-5a95-4eeb-bfc4-257e8ea8fa66	2641ff9a-cb27-4feb-b9ec-c191e56673bb	A	129518457	G	A	129518457	3	1	189	1	0	0	0	0	1	0	0	0	6641	1174	41	2	46	2	GPR119	23	129518457	Missense_Mutation	SNP	G	TCGA-B0-5697-01A-11D-1534-10	76234456	129518457	25752103	67	11944											
NPHP4	261734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	5934954	5934954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	5934954	C	A	5934954	3	1	190	1	0	0	0	0	1	0	0	0	10588	912	32	4	1296	4	NPHP4	1	5934954	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08		5934954	243315667	1	11945											
KIF1B	23095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10434522	10434522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	10434522	A	C	10434522	3	2	190	1	0	0	0	0	1	0	0	0	8291	86	3	5	6616	5	KIF1B	1	10434522	Missense_Mutation	SNP	A	TCGA-B0-5698-01A-11D-1669-08	4499568	10434522	238816099	2	11946											
UBIAD1	29914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11345857	11345858	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	11345858	-	C	11345857	7	5	190	1	0	1	1	0	0	0	0	0	16897	1551	54	0	692	0	UBIAD1	1	11345857	Frame_Shift_Ins	INS	-	TCGA-B0-5698-01A-11D-1669-08	911335	11345857	237904764	3	11947											
AADACL3	126767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12785830	12785830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	12785830	G	T	12785830	3	4	190	1	0	0	0	0	1	0	0	0	12	1174	41	4	938	4	AADACL3	1	12785830	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	1439973	12785830	236464791	4	11948											
CYB5RL	606495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54644949	54644949	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	G	54644949	T	G	54644949	3	3	190	1	0	0	0	0	1	0	0	0	4132	1493	52	5	338	5	CYB5RL	1	54644949	Missense_Mutation	SNP	T	TCGA-B0-5698-01A-11D-1669-08	41859119	54644949	194605672	5	11949											
PRKACB	5567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	84670172	84670172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	84670172	G	C	84670172	3	2	190	1	0	0	0	0	1	0	0	0	12508	1285	45	4	998	4	PRKACB	1	84670172	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	30025223	84670172	164580449	6	11950											
LRIG2	9860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	113635893	113635893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	113635893	T	A	113635893	3	1	190	1	0	0	0	0	1	0	0	0	8952	1522	53	5	381	5	LRIG2	1	113635893	Missense_Mutation	SNP	T	TCGA-B0-5698-01A-11D-1669-08	28965721	113635893	135614728	7	11951											
PTPRC	5788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	198678874	198678874	+	Missense_Mutation	SNP	G	G	C	rs139425744	alternate_allele	TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	198678874	G	C	198678874	3	2	190	1	0	0	0	0	1	0	0	0	12810	1020	36	4	1135	4	PTPRC	1	198678874	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	85042981	198678874	50571747	8	11952	141	2									
PTPRC	5788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	198678876	198678876	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	198678876	A	T	198678876	3	4	190	1	0	0	0	0	1	0	0	0	12810	449	16	5	1137	5	PTPRC	1	198678876	Missense_Mutation	SNP	A	TCGA-B0-5698-01A-11D-1669-08	2	198678876	50571745	9	11953	141	2									
SUSD4	55061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223408420	223408420	+	Silent	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	223408420	G	A	223408420	2	1	190	1	0	0	0	0	0	0	0	1	15422	1165	41	2		2	SUSD4	1	223408420	Silent	SNP	G	TCGA-B0-5698-01A-11D-1669-08	24729544	223408420	25842201	10	11954											
TANC1	85461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160042345	160042345	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	160042345	G	C	160042345	3	2	190	1	0	0	0	0	1	0	0	0	15556	1232	43	4	2604	4	TANC1	2	160042345	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08		160042345	83157028	11	11955											
SLC4A10	57282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	162661045	162661046	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	-	162661046	AG	-	162661045	7	5	190	1	0	1	0	1	0	0	0	0	14664	180	7	0	312	0	SLC4A10	2	162661045	Frame_Shift_Del	DEL	AG	TCGA-B0-5698-01A-11D-1669-08	2618700	162661045	80538328	12	11956											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179404241	179404241	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	179404241	G	A	179404241	4	1	190	1	0	0	0	0	0	1	0	0	16747	1124	39	1	9472	1	TTN	2	179404241	Nonsense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	16743196	179404241	63795132	13	11957											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179476554	179476554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	179476554	C	A	179476554	3	1	190	1	0	0	0	0	1	0	0	0	16747	739	26	4	57591	4	TTN	2	179476554	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	72313	179476554	63722819	14	11958											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179485685	179485685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	179485685	G	A	179485685	3	1	190	1	0	0	0	0	1	0	0	0	16747	1115	39	1	62505	1	TTN	2	179485685	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	9131	179485685	63713688	15	11959											
SF3B1	23451	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	198266611	198266611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	198266611	C	T	198266611	3	4	190	1	0	0	0	0	1	0	0	0	14162	521	18	2	1729	2	SF3B1	2	198266611	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	18780926	198266611	44932762	16	11960											
TMEM169	92691	hgsc.bcm.edu;ucsc.edu	37	2	216960807	216960807	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	-	216960807	A	-	216960807	7	5	190	1	0	1	0	1	0	0	0	0	16096	247	9	0	123	0	TMEM169	2	216960807	Frame_Shift_Del	DEL	A	TCGA-B0-5698-01A-11D-1669-08	18694196	216960807	26238566	17	11961											
GNAI2	2771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	50294255	50294255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	50294255	G	T	50294255	3	4	190	1	0	0	0	0	1	0	0	0	6512	1290	45	4	727	4	GNAI2	3	50294255	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08		50294255	147728175	18	11962											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52610584	52610584	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	-	52610584	C	-	52610584	7	5	190	1	0	1	0	1	0	0	0	0	11498	922	32	0	1272	0	PBRM1	3	52610584	Frame_Shift_Del	DEL	C	TCGA-B0-5698-01A-11D-1669-08	2316329	52610584	145411846	19	11963											
ZBTB20	26137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	114070318	114070318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	114070318	C	T	114070318	3	4	190	1	0	0	0	0	1	0	0	0	17541	623	22	2	1626	2	ZBTB20	3	114070318	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	61459734	114070318	83952112	20	11964											
STAG1	10274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	136240212	136240212	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	-	136240212	T	-	136240212	7	5	190	1	0	1	0	1	0	0	0	0	15254	1490	52	0	3369	0	STAG1	3	136240212	Frame_Shift_Del	DEL	T	TCGA-B0-5698-01A-11D-1669-08	22169894	136240212	61782218	21	11965											
IL1RAP	3556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	190321925	190321925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	190321925	G	A	190321925	3	1	190	1	0	0	0	0	1	0	0	0	7667	1058	37	1	79	1	IL1RAP	3	190321925	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	54081713	190321925	7700505	22	11966											
STK32B	55351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	5461876	5461876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	5461876	T	C	5461876	3	2	190	1	0	0	0	0	1	0	0	0	15310	1406	49	3	864	3	STK32B	4	5461876	Missense_Mutation	SNP	T	TCGA-B0-5698-01A-11D-1669-08		5461876	185692400	23	11967											
PCDH10	57575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	134071550	134071550	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	134071550	C	A	134071550	4	1	190	1	0	0	0	0	0	1	0	0	11514	718	25	4	257	4	PCDH10	4	134071550	Nonsense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	128609674	134071550	57082726	24	11968											
YTHDC2	64848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	112888982	112888982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	112888982	G	C	112888982	3	2	190	1	0	0	0	0	1	0	0	0	17509	1029	36	4	1843	4	YTHDC2	5	112888982	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08		112888982	68026278	25	11969											
ACSL6	23305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131296216	131296216	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	131296216	A	T	131296216	3	4	190	1	0	0	0	0	1	0	0	0	181	446	16	5	224	5	ACSL6	5	131296216	Missense_Mutation	SNP	A	TCGA-B0-5698-01A-11D-1669-08	18407234	131296216	49619044	26	11970											
CDYL	9425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	4735076	4735076	+	RNA	SNP	C	C	G	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	G	4735076	C	G	4735076	1	3	190	0	1	0	0	0	0	0	0	0	3187	493	17	4		4	CDYL	6	4735076	RNA	SNP	C	TCGA-B0-5698-01A-11D-1669-08		4735076	166379991	27	11971											
ZNF311	282890	broad.mit.edu;hgsc.bcm.edu	37	6	28967350	28967350	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	-	28967350	T	-	28967350	7	5	190	1	0	1	0	1	0	0	0	0	17846	1725	60	0	1788	0	ZNF311	6	28967350	Frame_Shift_Del	DEL	T	TCGA-B0-5698-01A-11D-1669-08	24232274	28967350	142147717	28	11972											
PRRT1	80863	broad.mit.edu;hgsc.bcm.edu	37	6	32117130	32117130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	32117130	C	T	32117130	3	4	190	1	0	0	0	0	1	0	0	0	12619	768	27	1	134	1	PRRT1	6	32117130	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	3149780	32117130	138997937	29	11973											
PRPH2	5961	broad.mit.edu;ucsc.edu	37	6	42666085	42666085	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	42666085	C	C	42666085	3	2	190	1	0	0	0	0	1	0	0	0	12587	1725	60	3	55	3	PRPH2	6	42666085	Missense_Mutation	SNP	T	TCGA-B0-5698-01A-11D-1669-08	10548955	42666085	128448982	30	11974											
TMEM63B	55362	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44107217	44107217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	44107217	C	T	44107217	3	4	190	1	0	0	0	0	1	0	0	0	16203	643	23	1	443	1	TMEM63B	6	44107217	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	1441132	44107217	127007850	31	11975											
EYS	346007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	66063414	66063414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	66063414	G	T	66063414	3	4	190	1	0	0	0	0	1	0	0	0	5334	1348	47	4	8140	4	EYS	6	66063414	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	21956197	66063414	105051653	32	11976											
PPIL4	85313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	149833352	149833352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	149833352	G	C	149833352	3	2	190	1	0	0	0	0	1	0	0	0	12339	1261	44	4	320	4	PPIL4	6	149833352	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	83769938	149833352	21281715	33	11977											
PIWIL2	55124	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	22138976	22138976	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	22138976	G	C	22138976	3	2	190	1	0	0	0	0	1	0	0	0	11965	1029	36	4	383	4	PIWIL2	8	22138976	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08		22138976	124225046	34	11978											
CPA6	57094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	68396051	68396051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	68396051	G	T	68396051	3	4	190	1	0	0	0	0	1	0	0	0	3796	1058	37	4	539	4	CPA6	8	68396051	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	46257075	68396051	77967971	35	11979											
TRPA1	8989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	72975792	72975792	+	Silent	SNP	A	A	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	72975792	A	C	72975792	2	2	190	1	0	0	0	0	0	0	0	1	16589	407	15	5		5	TRPA1	8	72975792	Silent	SNP	A	TCGA-B0-5698-01A-11D-1669-08	4579741	72975792	73388230	36	11980											
DNAI1	27019	broad.mit.edu;hgsc.bcm.edu	37	9	34490013	34490013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	34490013	C	T	34490013	3	4	190	1	0	0	0	0	1	0	0	0	4611	913	32	2	414	2	DNAI1	9	34490013	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08		34490013	106723418	37	11981											
KIAA0649	0	broad.mit.edu;hgsc.bcm.edu	37	9	138379621	138379621	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	G	138379621	T	G	138379621	3	3	190	1	0	0	0	0	1	0	0	0	8194	1609	56	5	3267	5	KIAA0649	9	138379621	Missense_Mutation	SNP	T	TCGA-B0-5698-01A-11D-1669-08	103889608	138379621	2833810	38	11982											
HSPA14	51182	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	14890648	14890648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	14890648	A	C	14890648	3	2	190	1	0	0	0	0	1	0	0	0	7414	363	13	5	276	5	HSPA14	10	14890648	Missense_Mutation	SNP	A	TCGA-B0-5698-01A-11D-1669-08		14890648	120644099	39	11983											
MUC6	4588	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1029578	1029578	+	Silent	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	1029578	G	A	1029578	2	1	190	1	0	0	0	0	0	0	0	1	9987	1079	38	1		1	MUC6	11	1029578	Silent	SNP	G	TCGA-B0-5698-01A-11D-1669-08		1029578	133976938	40	11984											
CNTN5	53942	broad.mit.edu;hgsc.bcm.edu	37	11	100226891	100226891	+	Silent	SNP	C	C	G	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	G	100226891	C	G	100226891	2	3	190	1	0	0	0	0	0	0	0	1	3646	581	21	4		4	CNTN5	11	100226891	Silent	SNP	C	TCGA-B0-5698-01A-11D-1669-08	99197313	100226891	34779625	41	11985											
PDZD3	79849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119059108	119059108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	119059108	G	A	119059108	3	1	190	1	0	0	0	0	1	0	0	0	11709	1203	42	2	937	2	PDZD3	11	119059108	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	18832217	119059108	15947408	42	11986											
STAT2	6773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56745117	56745117	+	Silent	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	56745117	G	A	56745117	2	1	190	1	0	0	0	0	0	0	0	1	15277	1306	46	2		2	STAT2	12	56745117	Silent	SNP	G	TCGA-B0-5698-01A-11D-1669-08		56745117	77106778	43	11987											
ZBTB39	9880	hgsc.bcm.edu;ucsc.edu	37	12	57397920	57397923	+	Frame_Shift_Del	DEL	AGGA	AGGA	-	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	AGGA	AGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	-	57397923	AGGA	-	57397920	7	5	190	1	0	1	0	1	0	0	0	0	17552	304	11	0	1360	0	ZBTB39	12	57397920	Frame_Shift_Del	DEL	AGGA	TCGA-B0-5698-01A-11D-1669-08	652803	57397920	76453975	44	11988											
NXPH4	11247	hgsc.bcm.edu	37	12	57619187	57619188	+	In_Frame_Ins	INS	-	-	GGC	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	GGC	57619188	-	GGC	57619187	7	5	190	1	0	1	1	0	0	0	0	0	10800	1464	51	0	590	0	NXPH4	12	57619187	In_Frame_Ins	INS	-	TCGA-B0-5698-01A-11D-1669-08	221267	57619187	76232708	45	11989											
NAV3	89795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	78553024	78553024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	78553024	G	A	78553024	3	1	190	1	0	0	0	0	1	0	0	0	10192	1290	45	2	4917	2	NAV3	12	78553024	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	20933837	78553024	55298871	46	11990											
NUP37	79023	hgsc.bcm.edu;ucsc.edu	37	12	102506003	102506011	+	In_Frame_Del	DEL	TCTTCTTCC	TCTTCTTCC	-	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	TCTTCTTCC	TCTTCTTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	-	102506011	TCTTCTTCC	-	102506003	7	5	190	1	0	1	0	1	0	0	0	0	10771	1783	62	0	848	0	NUP37	12	102506003	In_Frame_Del	DEL	TCTTCTTCC	TCGA-B0-5698-01A-11D-1669-08	23952979	102506003	31345892	47	11991											
TMEM132D	121256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	129558540	129558540	+	Silent	SNP	G	G	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	129558540	G	T	129558540	2	4	190	1	0	0	0	0	0	0	0	1	16059	1335	47	4		4	TMEM132D	12	129558540	Silent	SNP	G	TCGA-B0-5698-01A-11D-1669-08	27052537	129558540	4293355	48	11992											
RIMBP2	23504	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	130935856	130935856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	130935856	C	T	130935856	3	4	190	1	0	0	0	0	1	0	0	0	13376	710	25	2	2881	2	RIMBP2	12	130935856	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	1377316	130935856	2916039	49	11993											
EP400	57634	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	132511994	132511994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	132511994	G	A	132511994	3	1	190	1	0	0	0	0	1	0	0	0	5151	1203	42	2	5122	2	EP400	12	132511994	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	1576138	132511994	1339901	50	11994											
ELF1	1997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	41507956	41507956	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	41507956	G	A	41507956	4	1	190	1	0	0	0	0	0	1	0	0	5055	1386	48	2	398	2	ELF1	13	41507956	Nonsense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08		41507956	73661922	51	11995											
SLITRK6	84189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	86370082	86370082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	86370082	G	T	86370082	3	4	190	1	0	0	0	0	1	0	0	0	14760	933	33	4	1967	4	SLITRK6	13	86370082	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	44862126	86370082	28799796	52	11996											
NALCN	259232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	101720287	101720287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	101720287	C	A	101720287	3	1	190	1	0	0	0	0	1	0	0	0	10155	507	18	4	811	4	NALCN	13	101720287	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	15350205	101720287	13449591	53	11997											
L2HGDH	79944	broad.mit.edu	37	14	50736035	50736035	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	G	50736035	G	G	50736035	3	3	190	1	0	0	0	0	1	0	0	0	8597	884	31	4	655	4	L2HGDH	14	50736035	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08		50736035	56613505	54	11998											
KIAA1370	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52892355	52892355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	G	52892355	A	G	52892355	3	3	190	1	0	0	0	0	1	0	0	0	8233	449	16	3	632	3	KIAA1370	15	52892355	Missense_Mutation	SNP	A	TCGA-B0-5698-01A-11D-1669-08		52892355	49639037	55	11999											
NEO1	4756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	73585755	73585755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	G	73585755	A	G	73585755	3	3	190	1	0	0	0	0	1	0	0	0	10343	217	8	3	3869	3	NEO1	15	73585755	Missense_Mutation	SNP	A	TCGA-B0-5698-01A-11D-1669-08	20693400	73585755	28945637	56	12000											
XPO6	23214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28115915	28115915	+	Silent	SNP	G	G	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	28115915	G	T	28115915	2	4	190	1	0	0	0	0	0	0	0	1	17460	1048	37	4		4	XPO6	16	28115915	Silent	SNP	G	TCGA-B0-5698-01A-11D-1669-08		28115915	62238838	57	12001											
ITFG1	81533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	47493063	47493063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	47493063	C	A	47493063	3	1	190	1	0	0	0	0	1	0	0	0	7876	739	26	4	1674	4	ITFG1	16	47493063	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	19377148	47493063	42861690	58	12002											
FTSJD1	55783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71318530	71318530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	71318530	T	C	71318530	3	2	190	1	0	0	0	0	1	0	0	0	6097	1850	64	3	1022	3	FTSJD1	16	71318530	Missense_Mutation	SNP	T	TCGA-B0-5698-01A-11D-1669-08	23825467	71318530	19036223	59	12003											
ARHGEF15	22899	hgsc.bcm.edu;ucsc.edu	37	17	8216256	8216256	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	-	8216256	C	-	8216256	7	5	190	1	0	1	0	1	0	0	0	0	898	747	26	0	624	0	ARHGEF15	17	8216256	Frame_Shift_Del	DEL	C	TCGA-B0-5698-01A-11D-1669-08		8216256	72978954	60	12004											
TMIGD1	388364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	28659092	28659092	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	G	28659092	T	G	28659092	3	3	190	1	0	0	0	0	1	0	0	0	16242	1403	49	5	752	5	TMIGD1	17	28659092	Missense_Mutation	SNP	T	TCGA-B0-5698-01A-11D-1669-08	20442836	28659092	52536118	61	12005											
ATP6V0A1	535	broad.mit.edu	37	17	40647651	40647651	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	40647651	T	T	40647651	3	4	190	1	0	0	0	0	1	0	0	0	1168	275	10	5	1548	5	ATP6V0A1	17	40647651	Missense_Mutation	SNP	A	TCGA-B0-5698-01A-11D-1669-08	11988559	40647651	40547559	62	12006											
NFE2L1	4779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	46134732	46134732	+	Silent	SNP	A	A	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	46134732	A	T	46134732	2	4	190	1	0	0	0	0	0	0	0	1	10374	175	7	5		5	NFE2L1	17	46134732	Silent	SNP	A	TCGA-B0-5698-01A-11D-1669-08	5487081	46134732	35060478	63	12007											
CTDP1	9150	broad.mit.edu;hgsc.bcm.edu	37	18	77475251	77475251	+	Silent	SNP	G	G	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	77475251	G	C	77475251	2	2	190	1	0	0	0	0	0	0	0	1	4004	1335	47	4		4	CTDP1	18	77475251	Silent	SNP	G	TCGA-B0-5698-01A-11D-1669-08		77475251	601997	64	12008											
DAZAP1	26528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1433802	1433802	+	Silent	SNP	C	C	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	1433802	C	T	1433802	2	4	190	1	0	0	0	0	0	0	0	1	4246	813	29	2		2	DAZAP1	19	1433802	Silent	SNP	C	TCGA-B0-5698-01A-11D-1669-08		1433802	57695181	65	12009											
PIP5K1C	23396	broad.mit.edu	37	19	3651997	3651997	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	3651997	T	T	3651997	3	4	190	1	0	0	0	0	1	0	0	0	11948	1194	42	4	1096	4	PIP5K1C	19	3651997	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	2218195	3651997	55476986	66	12010											
OR10H4	126541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	16059970	16059970	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	16059970	G	A	16059970	4	1	190	1	0	0	0	0	0	1	0	0	10915	1183	41	2	155	2	OR10H4	19	16059970	Nonsense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	12407973	16059970	43069013	67	12011											
FAM125A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17533164	17533164	+	Missense_Mutation	SNP	C	C	T	rs146357246	alternate_allele	TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	17533164	C	T	17533164	3	4	190	1	0	0	0	0	1	0	0	0	5431	536	19	1	324	1	FAM125A	19	17533164	Missense_Mutation	SNP	C	TCGA-B0-5698-01A-11D-1669-08	1473194	17533164	41595819	68	12012											
SHKBP1	92799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41094601	41094601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	41094601	G	A	41094601	3	1	190	1	0	0	0	0	1	0	0	0	14297	1116	39	1	1462	1	SHKBP1	19	41094601	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08	23561437	41094601	18034382	69	12013											
LTBP4	8425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41120306	41120306	+	Silent	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	41120306	G	A	41120306	2	1	190	1	0	0	0	0	0	0	0	1	9083	1219	43	2		2	LTBP4	19	41120306	Silent	SNP	G	TCGA-B0-5698-01A-11D-1669-08	25705	41120306	18008677	70	12014											
ZNF341	84905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	32377331	32377331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	32377331	A	C	32377331	3	2	190	1	0	0	0	0	1	0	0	0	17869	159	6	5	2005	5	ZNF341	20	32377331	Missense_Mutation	SNP	A	TCGA-B0-5698-01A-11D-1669-08		32377331	30648189	71	12015											
SIK1	150094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	44840177	44840177	+	Silent	SNP	G	G	A	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	A	44840177	G	A	44840177	2	1	190	1	0	0	0	0	0	0	0	1	14330	1020	36	2		2	SIK1	21	44840177	Silent	SNP	G	TCGA-B0-5698-01A-11D-1669-08		44840177	3289718	72	12016											
CLTCL1	8218	broad.mit.edu;hgsc.bcm.edu	37	22	19210260	19210260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	19210260	G	C	19210260	3	2	190	1	0	0	0	0	1	0	0	0	3569	991	35	4	2629	4	CLTCL1	22	19210260	Missense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08		19210260	32094306	73	12017											
MAPK12	6300	broad.mit.edu;hgsc.bcm.edu	37	22	50695076	50695076	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	T	50695076	C	T	50695076	5	4	190	1	0	0	0	0	0	0	1	0	9281	695	24	2	675	2	MAPK12	22	50695076	Splice_Site	SNP	C	TCGA-B0-5698-01A-11D-1669-08	31484816	50695076	609490	74	12018											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu	37	X	53224222	53224222	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B0-5698-01A-11D-1669-08	TCGA-B0-5698-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ddf2fa6-7871-49fb-be2c-8fce6f8e41ed	7f4d9a43-84db-47f3-b579-2ff98bd05afb	C	53224222	G	C	53224222	4	2	190	1	0	0	0	0	0	1	0	0	8142	1294	45	4	1471	4	KDM5C	23	53224222	Nonsense_Mutation	SNP	G	TCGA-B0-5698-01A-11D-1669-08		53224222	102046338	75	12019											
GJB3	2707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35250612	35250612	+	Silent	SNP	C	C	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	35250612	C	T	35250612	2	4	191	1	0	0	0	0	0	0	0	1	6416	883	31	1		1	GJB3	1	35250612	Silent	SNP	C	TCGA-B0-5699-01A-11D-1534-10		35250612	214000009	1	12020											
COL9A2	1298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40777353	40777353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	40777353	G	A	40777353	3	1	191	1	0	0	0	0	1	0	0	0	3710	1348	47	2	1713	2	COL9A2	1	40777353	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10	5526741	40777353	208473268	2	12021											
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu	37	1	144922040	144922040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	C	144922040	T	C	144922040	3	2	191	1	0	0	0	0	1	0	0	0	11650	1551	54	3	6205	3	PDE4DIP	1	144922040	Missense_Mutation	SNP	T	TCGA-B0-5699-01A-11D-1534-10	104144687	144922040	104328581	3	12022											
DCST1	149095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155006934	155006934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	155006934	G	T	155006934	3	4	191	1	0	0	0	0	1	0	0	0	4304	1232	43	4	91	4	DCST1	1	155006934	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10	10084894	155006934	94243687	4	12023											
EHBP1	23301	broad.mit.edu;ucsc.edu	37	2	62934347	62934347	+	Silent	SNP	A	G	G	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	62934347	G	G	62934347	2	3	191	1	0	0	0	0	0	0	0	1	4977	272	10	3		3	EHBP1	2	62934347	Silent	SNP	A	TCGA-B0-5699-01A-11D-1534-10		62934347	180265026	5	12024											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47164498	47164498	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	47164498	G	T	47164498	4	4	191	1	0	0	0	0	0	1	0	0	14144	1294	45	4	6142	4	SETD2	3	47164498	Nonsense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10		47164498	150857932	6	12025											
BAP1	8314	ucsc.edu	37	3	52436362	52436362	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	T	-	T	T	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	-	52436362	T	-	52436362	7	5	191	1	0	1	0	1	0	0	0	0	1311	1609	56	0	61	0	BAP1	3	52436362	Frame_Shift_Del	DEL	T	TCGA-B0-5699-01A-11D-1534-10	5271864	52436362	145586068	7	12026											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52649451	52649451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	C	52649451	G	C	52649451	3	2	191	1	0	0	0	0	1	0	0	0	11498	991	35	4	3124	4	PBRM1	3	52649451	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10	213089	52649451	145372979	8	12027											
ALDH1L1	10840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	125854457	125854457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	125854457	C	G	125854457	3	3	191	1	0	0	0	0	1	0	0	0	494	565	20	4	1363	4	ALDH1L1	3	125854457	Missense_Mutation	SNP	C	TCGA-B0-5699-01A-11D-1534-10	73205006	125854457	72167973	9	12028											
PLXNA1	5361	broad.mit.edu;ucsc.edu	37	3	126707667	126707667	+	Silent	SNP	C	T	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	126707667	T	T	126707667	2	4	191	1	0	0	0	0	0	0	0	1	12126	506	18	2		2	PLXNA1	3	126707667	Silent	SNP	C	TCGA-B0-5699-01A-11D-1534-10	853210	126707667	71314763	10	12029											
MUC4	4585	hgsc.bcm.edu	37	3	195512550	195512597	+	In_Frame_Del	DEL	GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG	GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG	-	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG	GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	-	195512597	GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG	-	195512550	7	5	191	1	0	1	0	1	0	0	0	0	9985	987	35	0		0	MUC4	3	195512550	In_Frame_Del	DEL	GGTGGCGTGACCTGTGGGTACTGAGGAAGCGTCGGTGACAGGAAGAGG	TCGA-B0-5699-01A-11D-1534-10	68804883	195512550	2509880	11	12030											
NOP14	8602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	2948137	2948137	+	Splice_Site	SNP	A	A	G	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	2948137	A	G	2948137	5	3	191	1	0	0	0	0	0	0	1	0	10543	405	14	3	968	3	NOP14	4	2948137	Splice_Site	SNP	A	TCGA-B0-5699-01A-11D-1534-10		2948137	188206139	12	12031											
UGT2B11	10720	broad.mit.edu;hgsc.bcm.edu	37	4	70078407	70078407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	C	70078407	T	C	70078407	3	2	191	1	0	0	0	0	1	0	0	0	16969	1850	64	3	855	3	UGT2B11	4	70078407	Missense_Mutation	SNP	T	TCGA-B0-5699-01A-11D-1534-10	67130270	70078407	121075869	13	12032											
UGT2B4	7363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	70346629	70346629	+	Splice_Site	SNP	C	C	G	rs71599906	bycluster;byfrequency	TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	70346629	C	G	70346629	5	3	191	1	0	0	0	0	0	0	1	0	16973	927	32	4	280	4	UGT2B4	4	70346629	Splice_Site	SNP	C	TCGA-B0-5699-01A-11D-1534-10	268222	70346629	120807647	14	12033											
PRDM9	56979	broad.mit.edu	37	5	23522473	23522473	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	23522473	A	A	23522473	3	1	191	1	0	0	0	0	1	0	0	0	12473	710	25	4	591	4	PRDM9	5	23522473	Missense_Mutation	SNP	C	TCGA-B0-5699-01A-11D-1534-10		23522473	157392787	15	12034											
PCDHGB4	8641	broad.mit.edu;hgsc.bcm.edu	37	5	140769724	140769724	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	C	140769724	G	C	140769724	3	2	191	1	0	0	0	0	1	0	0	0	11572	1174	41	4	2275	4	PCDHGB4	5	140769724	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10	117247251	140769724	40145536	16	12035											
FAM71B	153745	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	156589916	156589916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	156589916	G	A	156589916	3	1	191	1	0	0	0	0	1	0	0	0	5615	1116	39	1	461	1	FAM71B	5	156589916	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10	15820192	156589916	24325344	17	12036											
SYNGAP1	8831	broad.mit.edu;hgsc.bcm.edu	37	6	33408548	33408548	+	Silent	SNP	G	G	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	33408548	G	A	33408548	2	1	191	1	0	0	0	0	0	0	0	1	15459	1190	42	2		2	SYNGAP1	6	33408548	Silent	SNP	G	TCGA-B0-5699-01A-11D-1534-10		33408548	137706519	18	12037											
SLC26A8	116369	broad.mit.edu;hgsc.bcm.edu	37	6	35922941	35922941	+	Silent	SNP	G	G	A	rs193054248	by1000genomes;alternate_allele	TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	35922941	G	A	35922941	2	1	191	1	0	0	0	0	0	0	0	1	14536	1045	37	1		1	SLC26A8	6	35922941	Silent	SNP	G	TCGA-B0-5699-01A-11D-1534-10	2514393	35922941	135192126	19	12038											
PCMT1	5110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	150094281	150094281	+	Silent	SNP	A	A	G	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	150094281	A	G	150094281	2	3	191	1	0	0	0	0	0	0	0	1	11592	69	3	3		3	PCMT1	6	150094281	Silent	SNP	A	TCGA-B0-5699-01A-11D-1534-10	114171340	150094281	21020786	20	12039											
ABCB1	5243	broad.mit.edu;ucsc.edu	37	7	87214930	87214930	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	87214930	T	T	87214930	3	4	191	1	0	0	0	0	1	0	0	0	40	594	21	2	3758	2	ABCB1	7	87214930	Missense_Mutation	SNP	C	TCGA-B0-5699-01A-11D-1534-10		87214930	71923733	21	12040											
SLC25A40	55972	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	87483612	87483612	+	Silent	SNP	T	T	C	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	C	87483612	T	C	87483612	2	2	191	1	0	0	0	0	0	0	0	1	14518	1393	49	3		3	SLC25A40	7	87483612	Silent	SNP	T	TCGA-B0-5699-01A-11D-1534-10	268682	87483612	71655051	22	12041											
ALKBH4	54784	broad.mit.edu	37	7	102098340	102098340	+	Missense_Mutation	SNP	C	T	T	rs145100726	byfrequency	TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	102098340	T	T	102098340	3	4	191	1	0	0	0	0	1	0	0	0	529	652	23	1	502	1	ALKBH4	7	102098340	Missense_Mutation	SNP	C	TCGA-B0-5699-01A-11D-1534-10	14614728	102098340	57040323	23	12042											
CLEC2L	154790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	139225199	139225199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	139225199	C	A	139225199	3	1	191	1	0	0	0	0	1	0	0	0	3511	768	27	4	408	4	CLEC2L	7	139225199	Missense_Mutation	SNP	C	TCGA-B0-5699-01A-11D-1534-10	37126859	139225199	19913464	24	12043											
PTK2B	2185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	27296898	27296898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	27296898	G	A	27296898	3	1	191	1	0	0	0	0	1	0	0	0	12774	1029	36	2	1891	2	PTK2B	8	27296898	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10		27296898	119067124	25	12044											
GSR	2936	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	30538473	30538473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	C	30538473	T	C	30538473	3	2	191	1	0	0	0	0	1	0	0	0	6835	1841	64	3	209	3	GSR	8	30538473	Missense_Mutation	SNP	T	TCGA-B0-5699-01A-11D-1534-10	3241575	30538473	115825549	26	12045											
A1CF	29974	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	52601746	52601746	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	52601746	T	A	52601746	4	1	191	1	0	0	0	0	0	1	0	0	2	1763	61	5	1579	5	A1CF	10	52601746	Nonsense_Mutation	SNP	T	TCGA-B0-5699-01A-11D-1534-10		52601746	82933001	27	12046											
LRIT2	340745	broad.mit.edu	37	10	85982281	85982281	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	85982281	T	T	85982281	3	4	191	1	0	0	0	0	1	0	0	0	8955	991	35	4	608	4	LRIT2	10	85982281	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10	33380535	85982281	49552466	28	12047											
NAV2	89797	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	19955242	19955242	+	Silent	SNP	C	C	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	19955242	C	A	19955242	2	1	191	1	0	0	0	0	0	0	0	1	10191	697	25	4		4	NAV2	11	19955242	Silent	SNP	C	TCGA-B0-5699-01A-11D-1534-10		19955242	115051274	29	12048	142	2									
NAV2	89797	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	19955243	19955243	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	19955243	A	T	19955243	3	4	191	1	0	0	0	0	1	0	0	0	10191	130	5	5	1558	5	NAV2	11	19955243	Missense_Mutation	SNP	A	TCGA-B0-5699-01A-11D-1534-10	1	19955243	115051273	30	12049	142	2									
HSPA8	3312	broad.mit.edu;hgsc.bcm.edu	37	11	122930929	122930929	+	Silent	SNP	A	A	G	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	122930929	A	G	122930929	2	3	191	1	0	0	0	0	0	0	0	1	7423	291	11	3		3	HSPA8	11	122930929	Silent	SNP	A	TCGA-B0-5699-01A-11D-1534-10	102975686	122930929	12075587	31	12050											
ZNF740	283337	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53579788	53579788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	53579788	T	A	53579788	3	1	191	1	0	0	0	0	1	0	0	0	18140	1490	52	5	314	5	ZNF740	12	53579788	Missense_Mutation	SNP	T	TCGA-B0-5699-01A-11D-1534-10		53579788	80272107	32	12051											
SYT1	6857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	79747321	79747321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	79747321	G	A	79747321	3	1	191	1	0	0	0	0	1	0	0	0	15477	1145	40	1	872	1	SYT1	12	79747321	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10	26167533	79747321	54104574	33	12052											
DCAF11	80344	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24587733	24587733	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	C	24587733	G	C	24587733	3	2	191	1	0	0	0	0	1	0	0	0	4264	1270	44	4	736	4	DCAF11	14	24587733	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10		24587733	82761807	34	12053											
ARHGAP5	394	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	32563340	32563340	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	32563340	T	G	32563340	4	3	191	1	0	0	0	0	0	1	0	0	886	1413	49	5	3467	5	ARHGAP5	14	32563340	Nonsense_Mutation	SNP	T	TCGA-B0-5699-01A-11D-1534-10	7975607	32563340	74786200	35	12054											
C14orf138	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	50579393	50579393	+	Silent	SNP	T	T	C	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	C	50579393	T	C	50579393	2	2	191	1	0	0	0	0	0	0	0	1	1748	1722	60	3		3	C14orf138	14	50579393	Silent	SNP	T	TCGA-B0-5699-01A-11D-1534-10	18016053	50579393	56770147	36	12055											
ACSBG1	23205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	78486923	78486923	+	Silent	SNP	G	G	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	78486923	G	A	78486923	2	1	191	1	0	0	0	0	0	0	0	1	173	1190	42	2		2	ACSBG1	15	78486923	Silent	SNP	G	TCGA-B0-5699-01A-11D-1534-10		78486923	24044469	37	12056											
NAT9	26151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72769713	72769713	+	Splice_Site	SNP	A	A	G	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	72769713	A	G	72769713	5	3	191	1	0	0	0	0	0	0	1	0	10189	173	6	3	451	3	NAT9	17	72769713	Splice_Site	SNP	A	TCGA-B0-5699-01A-11D-1534-10		72769713	8425497	38	12057											
KIAA1468	57614	broad.mit.edu;hgsc.bcm.edu	37	18	59854885	59854885	+	Silent	SNP	T	T	G	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	59854885	T	G	59854885	2	3	191	1	0	0	0	0	0	0	0	1	8243	1567	55	5		5	KIAA1468	18	59854885	Silent	SNP	T	TCGA-B0-5699-01A-11D-1534-10		59854885	18222363	39	12058											
VAV1	7409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6828475	6828475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	6828475	C	T	6828475	3	4	191	1	0	0	0	0	1	0	0	0	17143	759	27	1	1111	1	VAV1	19	6828475	Missense_Mutation	SNP	C	TCGA-B0-5699-01A-11D-1534-10		6828475	52300508	40	12059											
ANKRD27	84079	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	33110234	33110234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	33110234	A	T	33110234	3	4	191	1	0	0	0	0	1	0	0	0	655	304	11	5	1253	5	ANKRD27	19	33110234	Missense_Mutation	SNP	A	TCGA-B0-5699-01A-11D-1534-10	26281759	33110234	26018749	41	12060											
FPR1	2357	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52249899	52249899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	52249899	C	T	52249899	3	4	191	1	0	0	0	0	1	0	0	0	6045	768	27	1	707	1	FPR1	19	52249899	Missense_Mutation	SNP	C	TCGA-B0-5699-01A-11D-1534-10	19139665	52249899	6879084	42	12061											
EYA2	2139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	45702893	45702893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	45702893	C	A	45702893	3	1	191	1	0	0	0	0	1	0	0	0	5331	623	22	4	602	4	EYA2	20	45702893	Missense_Mutation	SNP	C	TCGA-B0-5699-01A-11D-1534-10		45702893	17322627	43	12062											
DDX27	55661	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47838004	47838004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	C	47838004	G	C	47838004	3	2	191	1	0	0	0	0	1	0	0	0	4356	1232	43	4	208	4	DDX27	20	47838004	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10	2135111	47838004	15187516	44	12063											
ZNFX1	57169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47887950	47887950	+	Silent	SNP	C	C	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	47887950	C	T	47887950	2	4	191	1	0	0	0	0	0	0	0	1	18217	796	28	2		2	ZNFX1	20	47887950	Silent	SNP	C	TCGA-B0-5699-01A-11D-1534-10	49946	47887950	15137570	45	12064											
GATA5	140628	broad.mit.edu	37	20	61041502	61041502	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	61041502	A	A	61041502	3	1	191	1	0	0	0	0	1	0	0	0	6264	1000	35	2	404	2	GATA5	20	61041502	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10	13153552	61041502	1984018	46	12065											
SFRS15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	33076230	33076230	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	G	33076230	C	G	33076230	3	3	191	1	0	0	0	0	1	0	0	0	14184	922	32	4	3342	4	SFRS15	21	33076230	Missense_Mutation	SNP	C	TCGA-B0-5699-01A-11D-1534-10		33076230	15053665	47	12066											
RPL3	6122	broad.mit.edu;ucsc.edu	37	22	39709724	39709724	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	T	39709724	T	T	39709724	3	4	191	1	0	0	0	0	1	0	0	0	13592	275	10	5	261	5	RPL3	22	39709724	Missense_Mutation	SNP	A	TCGA-B0-5699-01A-11D-1534-10		39709724	11594842	48	12067											
SLC25A6	293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	1505637	1505637	+	Missense_Mutation	SNP	G	G	A	rs143212891		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	A	1505637	G	A	1505637	3	1	191	1	0	0	0	0	1	0	0	0	14526	1145	40	1	145	1	SLC25A6	23	1505637	Missense_Mutation	SNP	G	TCGA-B0-5699-01A-11D-1534-10		1505637	153764923	49	12068											
MAGEC1	9947	hgsc.bcm.edu	37	X	140993904	140993906	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-B0-5699-01A-11D-1534-10	TCGA-B0-5699-11A-01D-1534-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f114d9c-6672-4440-be2d-b0370a9e35f2	36406ad1-96ad-420f-8b28-5142618e35f6	-	140993906	CCC	-	140993904	7	5	191	1	0	1	0	1	0	0	0	0	9187	738	26	0	720	0	MAGEC1	23	140993904	In_Frame_Del	DEL	CCC	TCGA-B0-5699-01A-11D-1534-10	139488267	140993904	14276656	50	12069											
VHL	7428	hgsc.bcm.edu	37	3	10183768	10183769	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5699-01A-11W-1584-10	TCGA-B0-5699-11A-01W-1584-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	97ea3c2a-a6b9-4d97-bc69-a6e11f187783	b795c8fc-7d51-494c-87c6-a891ad423312	T	10183769	-	T	10183768	7	5	192	1	0	1	1	0	0	0	0	0	17174	697	25	0	239	0	VHL	3	10183768	Frame_Shift_Ins	INS	-	TCGA-B0-5699-01A-11W-1584-10		10183768	187838662	1	12070	143	2									
VHL	7428	hgsc.bcm.edu	37	3	10183770	10183773	+	Frame_Shift_Del	DEL	GTCC	GTCC	-	novel		TCGA-B0-5699-01A-11W-1584-10	TCGA-B0-5699-11A-01W-1584-10	GTCC	GTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	97ea3c2a-a6b9-4d97-bc69-a6e11f187783	b795c8fc-7d51-494c-87c6-a891ad423312	-	10183773	GTCC	-	10183770	7	5	192	1	0	1	0	1	0	0	0	0	17174	1029	36	0	241	0	VHL	3	10183770	Frame_Shift_Del	DEL	GTCC	TCGA-B0-5699-01A-11W-1584-10	2	10183770	187838660	2	12071	143	2									
MTOR	2475	broad.mit.edu;ucsc.edu	37	1	11217299	11217299	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	11217299	G	G	11217299	3	3	193	1	0	0	0	0	1	0	0	0	9961	72	3	3	3386	3	MTOR	1	11217299	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10		11217299	238033322	1	12072											
TAS1R2	80834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19180859	19180859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	19180859	C	T	19180859	3	4	193	1	0	0	0	0	1	0	0	0	15575	768	27	1	1430	1	TAS1R2	1	19180859	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	7963560	19180859	230069762	2	12073											
EIF2C3	192669	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36411321	36411321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	36411321	G	A	36411321	3	1	193	1	0	0	0	0	1	0	0	0	5009	1348	47	2	54	2	EIF2C3	1	36411321	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	17230462	36411321	212839300	3	12074											
PTCH2	8643	broad.mit.edu;hgsc.bcm.edu	37	1	45288276	45288276	+	Silent	SNP	A	A	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	45288276	A	T	45288276	2	4	193	1	0	0	0	0	0	0	0	1	12741	349	13	5		5	PTCH2	1	45288276	Silent	SNP	A	TCGA-B0-5701-01A-11D-1534-10	8876955	45288276	203962345	4	12075											
RAD54L	8438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46714224	46714224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	46714224	C	A	46714224	3	1	193	1	0	0	0	0	1	0	0	0	13006	681	24	4	50	4	RAD54L	1	46714224	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	1425948	46714224	202536397	5	12076											
SASS6	163786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100572485	100572485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	100572485	A	T	100572485	3	4	193	1	0	0	0	0	1	0	0	0	13863	420	15	5	606	5	SASS6	1	100572485	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	53858261	100572485	148678136	6	12077											
NOTCH2	4853	hgsc.bcm.edu;ucsc.edu	37	1	120480035	120480035	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	120480035	T	-	120480035	7	5	193	1	0	1	0	1	0	0	0	0	10555	1725	60	0	4079	0	NOTCH2	1	120480035	Frame_Shift_Del	DEL	T	TCGA-B0-5701-01A-11D-1534-10	19907550	120480035	128770586	7	12078											
PDE4DIP	9659	broad.mit.edu	37	1	144923791	144923791	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	144923791	G	G	144923791	3	3	193	1	0	0	0	0	1	0	0	0	11650	1850	64	5	6539	5	PDE4DIP	1	144923791	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	24443756	144923791	104326830	8	12079											
DCST1	149095	hgsc.bcm.edu	37	1	155023256	155023256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	155023256	G	A	155023256	3	1	193	1	0	0	0	0	1	0	0	0	4304	1116	39	1	2095	1	DCST1	1	155023256	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	10099465	155023256	94227365	9	12080											
IGFN1	91156	hgsc.bcm.edu;ucsc.edu	37	1	201176095	201176095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	201176095	C	G	201176095	3	3	193	1	0	0	0	0	1	0	0	0	7597	623	22	4	2116	4	IGFN1	1	201176095	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	46152839	201176095	48074526	10	12081											
NAV1	89796	hgsc.bcm.edu	37	1	201772833	201772833	+	Silent	SNP	A	A	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	201772833	A	G	201772833	2	3	193	1	0	0	0	0	0	0	0	1	10190	11	1	3		3	NAV1	1	201772833	Silent	SNP	A	TCGA-B0-5701-01A-11D-1534-10	596738	201772833	47477788	11	12082											
TFB2M	64216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	246707837	246707837	+	Silent	SNP	T	T	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	246707837	T	C	246707837	2	2	193	1	0	0	0	0	0	0	0	1	15806	1741	61	3		3	TFB2M	1	246707837	Silent	SNP	T	TCGA-B0-5701-01A-11D-1534-10	44935004	246707837	2542784	12	12083											
MYT1L	23040	hgsc.bcm.edu	37	2	1946773	1946773	+	Silent	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	1946773	C	T	1946773	2	4	193	1	0	0	0	0	0	0	0	1	10114	680	24	2		2	MYT1L	2	1946773	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10		1946773	241252600	13	12084											
KIDINS220	57498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	8890360	8890360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	8890360	G	T	8890360	3	4	193	1	0	0	0	0	1	0	0	0	8278	1348	47	4	2047	4	KIDINS220	2	8890360	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	6943587	8890360	234309013	14	12085											
LRPPRC	10128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44176772	44176772	+	Silent	SNP	T	T	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	44176772	T	A	44176772	2	1	193	1	0	0	0	0	0	0	0	1	8972	1654	58	5		5	LRPPRC	2	44176772	Silent	SNP	T	TCGA-B0-5701-01A-11D-1534-10	35286412	44176772	199022601	15	12086											
NEB	4703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152476170	152476170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	152476170	T	C	152476170	3	2	193	1	0	0	0	0	1	0	0	0	10309	1580	55	3	15459	3	NEB	2	152476170	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	108299398	152476170	90723203	16	12087											
TTN	7273	broad.mit.edu;ucsc.edu	37	2	179435409	179435409	+	Silent	SNP	C	T	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	179435409	T	T	179435409	2	4	193	1	0	0	0	0	0	0	0	1	16747	680	24	2		2	TTN	2	179435409	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10	26959239	179435409	63763964	17	12088											
ASNSD1	54529	broad.mit.edu;ucsc.edu	37	2	190532496	190532496	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	190532496	G	G	190532496	3	3	193	1	0	0	0	0	1	0	0	0	1049	913	32	4	1477	4	ASNSD1	2	190532496	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	11097087	190532496	52666877	18	12089											
ATG4B	23192	broad.mit.edu;hgsc.bcm.edu	37	2	242606247	242606247	+	Silent	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	242606247	G	T	242606247	2	4	193	1	0	0	0	0	0	0	0	1	1097	1074	38	4		4	ATG4B	2	242606247	Silent	SNP	G	TCGA-B0-5701-01A-11D-1534-10	52073751	242606247	593126	19	12090											
PTH1R	5745	broad.mit.edu;ucsc.edu	37	3	46939429	46939429	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	46939429	G	G	46939429	3	3	193	1	0	0	0	0	1	0	0	0	12769	275	10	3	412	3	PTH1R	3	46939429	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10		46939429	151083001	20	12091											
ALAS1	211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52233311	52233311	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	52233311	T	G	52233311	3	3	193	1	0	0	0	0	1	0	0	0	484	1780	62	5	56	5	ALAS1	3	52233311	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	5293882	52233311	145789119	21	12092											
EPHA6	285220	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	96533798	96533798	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	96533798	T	A	96533798	3	1	193	1	0	0	0	0	1	0	0	0	5173	1606	56	5	333	5	EPHA6	3	96533798	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	44300487	96533798	101488632	22	12093											
BBX	56987	broad.mit.edu;ucsc.edu	37	3	107463494	107463494	+	Silent	SNP	C	T	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	107463494	T	T	107463494	2	4	193	1	0	0	0	0	0	0	0	1	1343	718	25	2		2	BBX	3	107463494	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10	10929696	107463494	90558936	23	12094											
ROPN1B	152015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	125702160	125702160	+	Silent	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	125702160	G	A	125702160	2	1	193	1	0	0	0	0	0	0	0	1	13537	1020	36	2		2	ROPN1B	3	125702160	Silent	SNP	G	TCGA-B0-5701-01A-11D-1534-10	18238666	125702160	72320270	24	12095											
PIK3R4	30849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130463550	130463550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	130463550	C	A	130463550	3	1	193	1	0	0	0	0	1	0	0	0	11928	796	28	4	3639	4	PIK3R4	3	130463550	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	4761390	130463550	67558880	25	12096											
PLSCR4	57088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	145914562	145914562	+	Missense_Mutation	SNP	G	G	C	rs149266233	alternate_allele	TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	145914562	G	C	145914562	3	2	193	1	0	0	0	0	1	0	0	0	12119	1174	41	4	358	4	PLSCR4	3	145914562	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	15451012	145914562	52107868	26	12097											
PLCH1	23007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	155212209	155212209	+	Silent	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	155212209	G	A	155212209	2	1	193	1	0	0	0	0	0	0	0	1	12044	1277	45	2		2	PLCH1	3	155212209	Silent	SNP	G	TCGA-B0-5701-01A-11D-1534-10	9297647	155212209	42810221	27	12098											
MUC4	4585	hgsc.bcm.edu	37	3	195508147	195508194	+	In_Frame_Del	DEL	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	195508194	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	-	195508147	7	5	193	1	0	1	0	1	0	0	0	0	9985	1261	44	0		0	MUC4	3	195508147	In_Frame_Del	DEL	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	TCGA-B0-5701-01A-11D-1534-10	40295938	195508147	2514283	28	12099											
RGS12	6002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	3318132	3318132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	3318132	G	T	3318132	3	4	193	1	0	0	0	0	1	0	0	0	13308	942	33	4	237	4	RGS12	4	3318132	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10		3318132	187836144	29	12100											
ARAP2	116984	hgsc.bcm.edu;ucsc.edu	37	4	36161108	36161108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	36161108	A	G	36161108	3	3	193	1	0	0	0	0	1	0	0	0	839	159	6	3	2732	3	ARAP2	4	36161108	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	32842976	36161108	154993168	30	12101											
SDAD1	55153	hgsc.bcm.edu;ucsc.edu	37	4	76898846	76898846	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	76898846	C	-	76898846	7	5	193	1	0	1	0	1	0	0	0	0	13963	922	32	0	1781	0	SDAD1	4	76898846	Frame_Shift_Del	DEL	C	TCGA-B0-5701-01A-11D-1534-10	40737738	76898846	114255430	31	12102											
HPSE	10855	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	84231973	84231973	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	84231973	T	A	84231973	3	1	193	1	0	0	0	0	1	0	0	0	7351	1490	52	5	919	5	HPSE	4	84231973	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	7333127	84231973	106922303	32	12103											
SPP1	6696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	88904007	88904007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	88904007	A	G	88904007	3	3	193	1	0	0	0	0	1	0	0	0	15098	449	16	3	926	3	SPP1	4	88904007	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	4672034	88904007	102250269	33	12104											
DNAH5	1767	hgsc.bcm.edu	37	5	13866368	13866369	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	13866369	-	A	13866368	7	5	193	1	0	1	1	0	0	0	0	0	4606	825	29	0	10013	0	DNAH5	5	13866368	Frame_Shift_Ins	INS	-	TCGA-B0-5701-01A-11D-1534-10		13866368	167048892	34	12105											
FAM170A	340069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	118969970	118969970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	118969970	T	C	118969970	3	2	193	1	0	0	0	0	1	0	0	0	5493	1696	59	3	537	3	FAM170A	5	118969970	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	105103602	118969970	61945290	35	12106											
CTNNA1	1495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	138163310	138163310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	138163310	C	T	138163310	3	4	193	1	0	0	0	0	1	0	0	0	4014	893	31	1	987	1	CTNNA1	5	138163310	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	19193340	138163310	42751950	36	12107											
PCDHB11	56125	hgsc.bcm.edu;ucsc.edu	37	5	140580390	140580391	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	140580391	-	T	140580390	7	5	193	1	0	1	1	0	0	0	0	0	11543	565	20	0	1045	0	PCDHB11	5	140580390	Frame_Shift_Ins	INS	-	TCGA-B0-5701-01A-11D-1534-10	2417080	140580390	40334870	37	12108											
FLT4	2324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	180036981	180036981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	180036981	G	A	180036981	3	1	193	1	0	0	0	0	1	0	0	0	5951	971	34	2	380	2	FLT4	5	180036981	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	39456591	180036981	878279	38	12109											
TUBB2B	347733	broad.mit.edu	37	6	3225818	3225818	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	3225818	T	T	3225818	3	4	193	1	0	0	0	0	1	0	0	0	16767	536	19	1	836	1	TUBB2B	6	3225818	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10		3225818	167889249	39	12110											
USP45	85015	hgsc.bcm.edu;ucsc.edu	37	6	99912577	99912577	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	99912577	A	-	99912577	7	5	193	1	0	1	0	1	0	0	0	0	17088	372	13	0	1257	0	USP45	6	99912577	Frame_Shift_Del	DEL	A	TCGA-B0-5701-01A-11D-1534-10	96686759	99912577	71202490	40	12111											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152665354	152665354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	152665354	C	A	152665354	3	1	193	1	0	0	0	0	1	0	0	0	15457	912	32	4	14671	4	SYNE1	6	152665354	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	52752777	152665354	18449713	41	12112											
CPSF4	10898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99045873	99045873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	99045873	A	T	99045873	3	4	193	1	0	0	0	0	1	0	0	0	3830	304	11	5	294	5	CPSF4	7	99045873	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10		99045873	60092790	42	12113											
PILRA	29992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99997510	99997510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	99997510	T	A	99997510	3	1	193	1	0	0	0	0	1	0	0	0	11932	1638	57	5	918	5	PILRA	7	99997510	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	951637	99997510	59141153	43	12114											
ATXN7L1	222255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	105254533	105254533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	105254533	G	T	105254533	3	4	193	1	0	0	0	0	1	0	0	0	1216	1000	35	4	352	4	ATXN7L1	7	105254533	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	5257023	105254533	53884130	44	12115											
MCPH1	79648	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	6302811	6302811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	6302811	A	G	6302811	3	3	193	1	0	0	0	0	1	0	0	0	9405	101	4	3	1598	3	MCPH1	8	6302811	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10		6302811	140061211	45	12116											
BRF2	55290	hgsc.bcm.edu;ucsc.edu	37	8	37704604	37704605	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	AT	37704605	-	AT	37704604	7	5	193	1	0	1	1	0	0	0	0	0	1513	1057	37	0	963	0	BRF2	8	37704604	Frame_Shift_Ins	INS	-	TCGA-B0-5701-01A-11D-1534-10	31401793	37704604	108659418	46	12117											
PRDM14	63978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	70981476	70981476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	70981476	T	C	70981476	3	2	193	1	0	0	0	0	1	0	0	0	12465	1638	57	3	1123	3	PRDM14	8	70981476	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	33276872	70981476	75382546	47	12118											
TMEM55A	55529	hgsc.bcm.edu;ucsc.edu	37	8	92008894	92008894	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	92008894	T	-	92008894	7	5	193	1	0	1	0	1	0	0	0	0	16193	1538	54	0	163	0	TMEM55A	8	92008894	Frame_Shift_Del	DEL	T	TCGA-B0-5701-01A-11D-1534-10	21027418	92008894	54355128	48	12119											
CSMD3	114788	broad.mit.edu;ucsc.edu	37	8	113237062	113237062	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	113237062	G	G	113237062	3	3	193	1	0	0	0	0	1	0	0	0	3948	275	10	3	65	3	CSMD3	8	113237062	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	21228168	113237062	33126960	49	12120											
OPLAH	26873	hgsc.bcm.edu	37	8	145113732	145113732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	145113732	C	G	145113732	3	3	193	1	0	0	0	0	1	0	0	0	10883	680	24	4	3429	4	OPLAH	8	145113732	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	31876670	145113732	1250290	50	12121											
TMOD1	7111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	100331319	100331319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	100331319	G	T	100331319	3	4	193	1	0	0	0	0	1	0	0	0	16245	1014	35	4	896	4	TMOD1	9	100331319	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10		100331319	40882112	51	12122											
OR13C8	138802	broad.mit.edu;ucsc.edu	37	9	107331603	107331603	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	107331603	G	G	107331603	3	3	193	1	0	0	0	0	1	0	0	0	10945	333	12	3	157	3	OR13C8	9	107331603	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	7000284	107331603	33881828	52	12123											
UAP1L1	91373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139973455	139973455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	139973455	T	C	139973455	3	2	193	1	0	0	0	0	1	0	0	0	16838	1580	55	3	712	3	UAP1L1	9	139973455	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	32641852	139973455	1239976	53	12124											
NET1	10276	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	5498060	5498060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	5498060	T	C	5498060	3	2	193	1	0	0	0	0	1	0	0	0	10345	1493	52	3	1347	3	NET1	10	5498060	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10		5498060	130036687	54	12125											
SVIL	6840	broad.mit.edu;ucsc.edu	37	10	29815982	29815982	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	29815982	G	G	29815982	3	3	193	1	0	0	0	0	1	0	0	0	15433	1722	60	5	4498	5	SVIL	10	29815982	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	24317922	29815982	105718765	55	12126											
C10orf12	26148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	98743198	98743198	+	Missense_Mutation	SNP	T	T	G	rs149307894	alternate_allele	TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	98743198	T	G	98743198	3	3	193	1	0	0	0	0	1	0	0	0	1591	1638	57	5	2053	5	C10orf12	10	98743198	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	68927216	98743198	36791549	56	12127											
PPRC1	23082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	103901173	103901173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	103901173	G	A	103901173	3	1	193	1	0	0	0	0	1	0	0	0	12420	1029	36	2	2926	2	PPRC1	10	103901173	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	5157975	103901173	31633574	57	12128											
KRTAP5-5	439915	broad.mit.edu;hgsc.bcm.edu	37	11	1651231	1651231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	1651231	G	T	1651231	3	4	193	1	0	0	0	0	1	0	0	0	8571	1203	42	4	163	4	KRTAP5-5	11	1651231	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10		1651231	133355285	58	12129											
OR52W1	120787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6220794	6220794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	6220794	C	A	6220794	3	1	193	1	0	0	0	0	1	0	0	0	11139	739	26	4	343	4	OR52W1	11	6220794	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	4569563	6220794	128785722	59	12130	144	2									
OR52W1	120787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6220795	6220795	+	Silent	SNP	C	C	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	6220795	C	A	6220795	2	1	193	1	0	0	0	0	0	0	0	1	11139	581	21	4		4	OR52W1	11	6220795	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10	1	6220795	128785721	60	12131	144	2									
CCDC73	493860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32637578	32637578	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	32637578	T	A	32637578	3	1	193	1	0	0	0	0	1	0	0	0	2848	1783	62	5	1972	5	CCDC73	11	32637578	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	26416783	32637578	102368938	61	12132											
OR5M1	390168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56380039	56380039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	56380039	C	A	56380039	3	1	193	1	0	0	0	0	1	0	0	0	11179	710	25	4	11	4	OR5M1	11	56380039	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	23742461	56380039	78626477	62	12133											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	103058111	103058111	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	103058111	A	T	103058111	3	4	193	1	0	0	0	0	1	0	0	0	4848	11	1	5	7106	5	DYNC2H1	11	103058111	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	46678072	103058111	31948405	63	12134											
CEP164	22897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117244472	117244472	+	Silent	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	117244472	G	A	117244472	2	1	193	1	0	0	0	0	0	0	0	1	3251	1335	47	2		2	CEP164	11	117244472	Silent	SNP	G	TCGA-B0-5701-01A-11D-1534-10	14186361	117244472	17762044	64	12135											
AMICA1	120425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118071315	118071315	+	Missense_Mutation	SNP	G	G	A	rs148107592		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	118071315	G	A	118071315	3	1	193	1	0	0	0	0	1	0	0	0	574	1116	39	1	415	1	AMICA1	11	118071315	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	826843	118071315	16935201	65	12136											
TECTA	7007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	120989265	120989265	+	Silent	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	120989265	G	A	120989265	2	1	193	1	0	0	0	0	0	0	0	1	15759	1310	46	2		2	TECTA	11	120989265	Silent	SNP	G	TCGA-B0-5701-01A-11D-1534-10	2917950	120989265	14017251	66	12137											
OR10G7	390265	broad.mit.edu;hgsc.bcm.edu	37	11	123909163	123909163	+	Silent	SNP	G	G	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	123909163	G	C	123909163	2	2	193	1	0	0	0	0	0	0	0	1	10909	1335	47	4		4	OR10G7	11	123909163	Silent	SNP	G	TCGA-B0-5701-01A-11D-1534-10	2919898	123909163	11097353	67	12138											
COL2A1	1280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48376305	48376305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	48376305	C	T	48376305	3	4	193	1	0	0	0	0	1	0	0	0	3689	768	27	1	2266	1	COL2A1	12	48376305	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10		48376305	85475590	68	12139											
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49422725	49422725	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	49422725	T	A	49422725	3	1	193	1	0	0	0	0	1	0	0	0	9628	1722	60	5	2385	5	MLL2	12	49422725	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	1046420	49422725	84429170	69	12140											
MAP3K12	7786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53877445	53877445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	53877445	A	G	53877445	3	3	193	1	0	0	0	0	1	0	0	0	9253	217	8	3	1281	3	MAP3K12	12	53877445	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	4454720	53877445	79974450	70	12141											
LACRT	90070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55026135	55026135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	55026135	G	A	55026135	3	1	193	1	0	0	0	0	1	0	0	0	8603	1319	46	2	285	2	LACRT	12	55026135	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	1148690	55026135	78825760	71	12142											
SMARCC2	6601	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56567525	56567525	+	Silent	SNP	A	A	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	56567525	A	G	56567525	2	3	193	1	0	0	0	0	0	0	0	1	14789	175	7	3		3	SMARCC2	12	56567525	Silent	SNP	A	TCGA-B0-5701-01A-11D-1534-10	1541390	56567525	77284370	72	12143											
TRAFD1	10906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	112586091	112586091	+	Missense_Mutation	SNP	G	G	A	rs142954248	byfrequency;alternate_allele	TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	112586091	G	A	112586091	3	1	193	1	0	0	0	0	1	0	0	0	16459	1261	44	2	1167	2	TRAFD1	12	112586091	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	56018566	112586091	21265804	73	12144											
OAS1	4938	hgsc.bcm.edu;ucsc.edu	37	12	113357245	113357246	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	113357246	AA	-	113357245	7	5	193	1	0	1	0	1	0	0	0	0	10806	247	9	0	1169	0	OAS1	12	113357245	Frame_Shift_Del	DEL	AA	TCGA-B0-5701-01A-11D-1534-10	771154	113357245	20494650	74	12145											
STRN3	29966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	31416465	31416465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	31416465	G	T	31416465	3	4	193	1	0	0	0	0	1	0	0	0	15342	942	33	4	1902	4	STRN3	14	31416465	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10		31416465	75933075	75	12146											
ADCK1	57143	broad.mit.edu	37	14	78397896	78397896	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	78397896	-	-	78397896	7	5	193	1	0	1	0	1	0	0	0	0	288	842	30	0	1276	0	ADCK1	14	78397896	Frame_Shift_Del	DEL	C	TCGA-B0-5701-01A-11D-1534-10	46981431	78397896	28951644	76	12147											
EML5	161436	hgsc.bcm.edu;ucsc.edu	37	14	89168918	89168918	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	89168918	A	T	89168918	3	4	193	1	0	0	0	0	1	0	0	0	5102	391	14	5	3943	5	EML5	14	89168918	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	10771022	89168918	18180622	77	12148	145	2									
EML5	161436	hgsc.bcm.edu	37	14	89168919	89168919	+	Silent	SNP	C	C	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	89168919	C	G	89168919	2	3	193	1	0	0	0	0	0	0	0	1	5102	465	17	4		4	EML5	14	89168919	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10	1	89168919	18180621	78	12149	145	2									
DUOX1	53905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45453967	45453967	+	Silent	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	45453967	G	A	45453967	2	1	193	1	0	0	0	0	0	0	0	1	4802	991	35	2		2	DUOX1	15	45453967	Silent	SNP	G	TCGA-B0-5701-01A-11D-1534-10		45453967	57077425	79	12150	146	2									
DUOX1	53905	broad.mit.edu;ucsc.edu	37	15	45453969	45453969	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	45453969	C	C	45453969	3	2	193	1	0	0	0	0	1	0	0	0	4802	1203	42	4	4004	4	DUOX1	15	45453969	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	2	45453969	57077423	80	12151	146	2									
SALL1	6299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	51174807	51174807	+	Silent	SNP	G	G	C	rs143605364	alternate_allele	TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	51174807	G	C	51174807	2	2	193	1	0	0	0	0	0	0	0	1	13823	1103	39	4		4	SALL1	16	51174807	Silent	SNP	G	TCGA-B0-5701-01A-11D-1534-10		51174807	39179946	81	12152											
CDH11	1009	broad.mit.edu;hgsc.bcm.edu	37	16	65038638	65038638	+	Silent	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	65038638	C	T	65038638	2	4	193	1	0	0	0	0	0	0	0	1	3099	726	26	2		2	CDH11	16	65038638	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10	13863831	65038638	25316115	82	12153											
NUDT7	283927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	77775769	77775769	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	77775769	A	C	77775769	3	2	193	1	0	0	0	0	1	0	0	0	10751	98	4	5	653	5	NUDT7	16	77775769	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	12737131	77775769	12578984	83	12154											
RABEP1	9135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5264813	5264813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	5264813	C	T	5264813	3	4	193	1	0	0	0	0	1	0	0	0	12974	507	18	2	1440	2	RABEP1	17	5264813	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10		5264813	75930397	84	12155											
DNAH2	146754	hgsc.bcm.edu;ucsc.edu	37	17	7663182	7663183	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	7663183	TC	-	7663182	7	5	193	1	0	1	0	1	0	0	0	0	4604	1435	50	0	2773	0	DNAH2	17	7663182	Frame_Shift_Del	DEL	TC	TCGA-B0-5701-01A-11D-1534-10	2398369	7663182	73532028	85	12156											
ZNF207	7756	broad.mit.edu;ucsc.edu	37	17	30694855	30694855	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	30694855	A	A	30694855	3	1	193	1	0	0	0	0	1	0	0	0	17777	478	17	4	1024	4	ZNF207	17	30694855	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	23031673	30694855	50500355	86	12157											
GPR179	440435	hgsc.bcm.edu;ucsc.edu	37	17	36483373	36483385	+	Frame_Shift_Del	DEL	TTCTTTCAGTCAC	TTCTTTCAGTCAC	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	TTCTTTCAGTCAC	TTCTTTCAGTCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	36483385	TTCTTTCAGTCAC	-	36483373	7	5	193	1	0	1	0	1	0	0	0	0	6681	1493	52	0	1028	0	GPR179	17	36483373	Frame_Shift_Del	DEL	TTCTTTCAGTCAC	TCGA-B0-5701-01A-11D-1534-10	5788518	36483373	44711837	87	12158											
GPATCH8	23131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42477558	42477558	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	42477558	T	A	42477558	3	1	193	1	0	0	0	0	1	0	0	0	6601	1780	62	5	2625	5	GPATCH8	17	42477558	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	5994185	42477558	38717652	88	12159											
TRIM37	4591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57079057	57079057	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	57079057	T	G	57079057	3	3	193	1	0	0	0	0	1	0	0	0	16523	1667	58	5	196	5	TRIM37	17	57079057	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	14601499	57079057	24116153	89	12160											
DDX42	11325	broad.mit.edu	37	17	61886961	61886961	+	Silent	SNP	T	C	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	61886961	C	C	61886961	2	2	193	1	0	0	0	0	0	0	0	1	4364	1770	62	3		3	DDX42	17	61886961	Silent	SNP	T	TCGA-B0-5701-01A-11D-1534-10	4807904	61886961	19308249	90	12161											
TEX2	55852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62291574	62291574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	62291574	T	A	62291574	3	1	193	1	0	0	0	0	1	0	0	0	15793	1667	58	5	3444	5	TEX2	17	62291574	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	404613	62291574	18903636	91	12162											
BPTF	2186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	65955704	65955704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	A	65955704	G	A	65955704	3	1	193	1	0	0	0	0	1	0	0	0	1497	1319	46	2	8454	2	BPTF	17	65955704	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	3664130	65955704	15239506	92	12163	147	2									
BPTF	2186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	65955705	65955705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	65955705	C	G	65955705	3	3	193	1	0	0	0	0	1	0	0	0	1497	711	25	4	8455	4	BPTF	17	65955705	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	1	65955705	15239505	93	12164	147	2									
KPNA2	3838	broad.mit.edu;hgsc.bcm.edu	37	17	66042696	66042696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	66042696	G	T	66042696	3	4	193	1	0	0	0	0	1	0	0	0	8437	1232	43	4	1612	4	KPNA2	17	66042696	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	86991	66042696	15152514	94	12165											
MC2R	4158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	13885108	13885108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	13885108	C	T	13885108	3	4	193	1	0	0	0	0	1	0	0	0	9371	652	23	1	487	1	MC2R	18	13885108	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10		13885108	64192140	95	12166											
DSC2	1824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	28648279	28648279	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	28648279	T	G	28648279	3	3	193	1	0	0	0	0	1	0	0	0	4768	1493	52	5	209	5	DSC2	18	28648279	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	14763171	28648279	49428969	96	12167											
KIAA1012	0	broad.mit.edu;ucsc.edu	37	18	29435680	29435680	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	29435680	C	C	29435680	3	2	193	1	0	0	0	0	1	0	0	0	8211	214	8	5	1064	5	KIAA1012	18	29435680	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	787401	29435680	48641568	97	12168											
KCNG2	26251	hgsc.bcm.edu	37	18	77659531	77659531	+	Silent	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	77659531	C	T	77659531	2	4	193	1	0	0	0	0	0	0	0	1	8035	547	19	1		1	KCNG2	18	77659531	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10	48223851	77659531	417717	98	12169											
TICAM1	148022	broad.mit.edu;hgsc.bcm.edu	37	19	4817479	4817479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	4817479	C	G	4817479	3	3	193	1	0	0	0	0	1	0	0	0	15904	710	25	4	1231	4	TICAM1	19	4817479	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10		4817479	54311504	99	12170											
DENND1C	79958	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6467832	6467832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	6467832	C	T	6467832	3	4	193	1	0	0	0	0	1	0	0	0	4430	864	30	2	320	2	DENND1C	19	6467832	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	1650353	6467832	52661151	100	12171											
GATAD2A	54815	broad.mit.edu	37	19	19609406	19609406	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	19609406	C	C	19609406	3	2	193	1	0	0	0	0	1	0	0	0	6267	1522	53	3	1105	3	GATAD2A	19	19609406	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	13141574	19609406	39519577	101	12172											
ZNF90	7643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	20229513	20229513	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	20229513	C	G	20229513	3	3	193	1	0	0	0	0	1	0	0	0	18211	681	24	4	1164	4	ZNF90	19	20229513	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	620107	20229513	38899470	102	12173											
MLL4	9757	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36211567	36211567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	36211567	C	G	36211567	3	3	193	1	0	0	0	0	1	0	0	0	9630	507	18	4	1328	4	MLL4	19	36211567	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	15982054	36211567	22917416	103	12174											
CAPN12	147968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39233680	39233680	+	Silent	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	39233680	C	T	39233680	2	4	193	1	0	0	0	0	0	0	0	1	2627	842	30	2		2	CAPN12	19	39233680	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10	3022113	39233680	19895303	104	12175											
ECH1	1891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39321980	39321980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	39321980	T	C	39321980	3	2	193	1	0	0	0	0	1	0	0	0	4894	1821	63	3	793	3	ECH1	19	39321980	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	88300	39321980	19807003	105	12176											
LTBP4	8425	hgsc.bcm.edu;ucsc.edu	37	19	41132926	41132926	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	41132926	C	-	41132926	7	5	193	1	0	1	0	1	0	0	0	0	9083	738	26	0	4647	0	LTBP4	19	41132926	Frame_Shift_Del	DEL	C	TCGA-B0-5701-01A-11D-1534-10	1810946	41132926	17996057	106	12177	148	2									
LTBP4	8425	hgsc.bcm.edu	37	19	41132932	41132932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	41132932	G	T	41132932	3	4	193	1	0	0	0	0	1	0	0	0	9083	1074	38	4	4653	4	LTBP4	19	41132932	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	6	41132932	17996051	107	12178	148	2									
NLRP2	55655	broad.mit.edu;ucsc.edu	37	19	55485895	55485895	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	55485895	T	T	55485895	3	4	193	1	0	0	0	0	1	0	0	0	10484	1000	35	4	314	4	NLRP2	19	55485895	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10	14352963	55485895	3643088	108	12179											
ZNF606	80095	hgsc.bcm.edu;ucsc.edu	37	19	58490239	58490239	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	58490239	T	-	58490239	7	5	193	1	0	1	0	1	0	0	0	0	18044	1606	56	0	573	0	ZNF606	19	58490239	Frame_Shift_Del	DEL	T	TCGA-B0-5701-01A-11D-1534-10	3004344	58490239	638744	109	12180											
ZNF584	201514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58928399	58928399	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	58928399	T	G	58928399	3	3	193	1	0	0	0	0	1	0	0	0	18028	1609	56	5	528	5	ZNF584	19	58928399	Missense_Mutation	SNP	T	TCGA-B0-5701-01A-11D-1534-10	438160	58928399	200584	110	12181											
DEFB116	245930	broad.mit.edu;ucsc.edu	37	20	29891177	29891177	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	29891177	T	T	29891177	3	4	193	1	0	0	0	0	1	0	0	0	4407	1136	40	4	164	4	DEFB116	20	29891177	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10		29891177	33134343	111	12182											
ASXL1	171023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31015950	31015950	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	31015950	C	G	31015950	3	3	193	1	0	0	0	0	1	0	0	0	1066	913	32	4	296	4	ASXL1	20	31015950	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	1124773	31015950	32009570	112	12183											
E2F1	1869	hgsc.bcm.edu	37	20	32267679	32267681	+	In_Frame_Del	DEL	CGA	CGA	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	CGA	CGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	32267681	CGA	-	32267679	7	5	193	1	0	1	0	1	0	0	0	0	4868	884	31	0	879	0	E2F1	20	32267679	In_Frame_Del	DEL	CGA	TCGA-B0-5701-01A-11D-1534-10	1251729	32267679	30757841	113	12184											
MRPS6	64968	hgsc.bcm.edu;ucsc.edu	37	21	35514723	35514723	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	-	35514723	T	-	35514723	7	5	193	1	0	1	0	1	0	0	0	0	9854	1490	52	0	211	0	MRPS6	21	35514723	Frame_Shift_Del	DEL	T	TCGA-B0-5701-01A-11D-1534-10		35514723	12615172	114	12185											
COL6A2	1292	broad.mit.edu;hgsc.bcm.edu	37	21	47545941	47545941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	47545941	C	T	47545941	3	4	193	1	0	0	0	0	1	0	0	0	3702	875	31	1	2310	1	COL6A2	21	47545941	Missense_Mutation	SNP	C	TCGA-B0-5701-01A-11D-1534-10	12031218	47545941	583954	115	12186											
HPS4	89781	broad.mit.edu;hgsc.bcm.edu	37	22	26859937	26859937	+	Silent	SNP	C	C	G	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	G	26859937	C	G	26859937	2	3	193	1	0	0	0	0	0	0	0	1	7348	465	17	4		4	HPS4	22	26859937	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10		26859937	24444629	116	12187											
NCAPH2	29781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50956419	50956419	+	Silent	SNP	C	C	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	50956419	C	T	50956419	2	4	193	1	0	0	0	0	0	0	0	1	10217	610	22	2		2	NCAPH2	22	50956419	Silent	SNP	C	TCGA-B0-5701-01A-11D-1534-10	24096482	50956419	348147	117	12188											
DOCK11	139818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	117752678	117752678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	T	117752678	G	T	117752678	3	4	193	1	0	0	0	0	1	0	0	0	4688	942	33	4	3580	4	DOCK11	23	117752678	Missense_Mutation	SNP	G	TCGA-B0-5701-01A-11D-1534-10		117752678	37517882	118	12189											
BCORL1	63035	broad.mit.edu	37	X	129147823	129147823	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B0-5701-01A-11D-1534-10	TCGA-B0-5701-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e1c563a-ee60-478b-9286-ed90e7561892	f5d8d96d-f597-46fe-8cd1-b097620ed8b7	C	129147823	C	C	129147823	3	2	193	1	0	0	0	0	1	0	0	0	1387	159	6	5	1085	5	BCORL1	23	129147823	Missense_Mutation	SNP	A	TCGA-B0-5701-01A-11D-1534-10	11395145	129147823	26122737	119	12190											
PLA2G2F	64600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	20466689	20466689	+	Silent	SNP	C	C	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	20466689	C	T	20466689	2	4	194	1	0	0	0	0	0	0	0	1	12006	639	23	1		1	PLA2G2F	1	20466689	Silent	SNP	C	TCGA-B0-5702-01A-11D-1534-10		20466689	228783932	1	12191											
HSPG2	3339	hgsc.bcm.edu	37	1	22199879	22199880	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	G	22199880	-	G	22199879	7	5	194	1	0	1	1	0	0	0	0	0	7437	1580	55	0	9665	0	HSPG2	1	22199879	Frame_Shift_Ins	INS	-	TCGA-B0-5702-01A-11D-1534-10	1733190	22199879	227050742	2	12192											
SCMH1	22955	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	41608634	41608634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	41608634	C	T	41608634	3	4	194	1	0	0	0	0	1	0	0	0	13921	826	29	2	1728	2	SCMH1	1	41608634	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	19408755	41608634	207641987	3	12193											
COL24A1	255631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	86362087	86362087	+	Silent	SNP	T	T	G	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	G	86362087	T	G	86362087	2	3	194	1	0	0	0	0	0	0	0	1	3685	1799	63	5		5	COL24A1	1	86362087	Silent	SNP	T	TCGA-B0-5702-01A-11D-1534-10	44753453	86362087	162888534	4	12194											
BRDT	676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	92470105	92470105	+	Silent	SNP	G	G	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	92470105	G	A	92470105	2	1	194	1	0	0	0	0	0	0	0	1	1510	1161	41	2		2	BRDT	1	92470105	Silent	SNP	G	TCGA-B0-5702-01A-11D-1534-10	6108018	92470105	156780516	5	12195											
DDX20	11218	hgsc.bcm.edu	37	1	112305403	112305403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	112305403	T	A	112305403	3	1	194	1	0	0	0	0	1	0	0	0	4350	1826	63	5	1243	5	DDX20	1	112305403	Missense_Mutation	SNP	T	TCGA-B0-5702-01A-11D-1534-10	19835298	112305403	136945218	6	12196											
FLG2	388698	broad.mit.edu;hgsc.bcm.edu	37	1	152324078	152324078	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	152324078	C	A	152324078	4	1	194	1	0	0	0	0	0	1	0	0	5930	690	24	4	995	4	FLG2	1	152324078	Nonsense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	40018675	152324078	96926543	7	12197											
FLG2	388698	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152326741	152326741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	152326741	C	T	152326741	3	4	194	1	0	0	0	0	1	0	0	0	5930	507	18	2	3658	2	FLG2	1	152326741	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	2663	152326741	96923880	8	12198											
PRCC	5546	broad.mit.edu;ucsc.edu	37	1	156764508	156764508	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	156764508	T	T	156764508	3	4	194	1	0	0	0	0	1	0	0	0	12457	1377	48	4	1249	4	PRCC	1	156764508	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10	4437767	156764508	92486113	9	12199											
LAMC2	3918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183196680	183196680	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	183196680	A	T	183196680	3	4	194	1	0	0	0	0	1	0	0	0	8622	275	10	5	1354	5	LAMC2	1	183196680	Missense_Mutation	SNP	A	TCGA-B0-5702-01A-11D-1534-10	26432172	183196680	66053941	10	12200											
PARP1	142	broad.mit.edu;ucsc.edu	37	1	226561930	226561930	+	Silent	SNP	A	G	G	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	G	226561930	G	G	226561930	2	3	194	1	0	0	0	0	0	0	0	1	11461	224	8	3		3	PARP1	1	226561930	Silent	SNP	A	TCGA-B0-5702-01A-11D-1534-10	43365250	226561930	22688691	11	12201											
RYR2	6262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	237886484	237886484	+	Missense_Mutation	SNP	G	G	T	rs183911939	by1000genomes;alternate_allele	TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	237886484	G	T	237886484	3	4	194	1	0	0	0	0	1	0	0	0	13782	1165	41	4	10905	4	RYR2	1	237886484	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10	11324554	237886484	11364137	12	12202											
FBXO11	80204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	48050392	48050392	+	Silent	SNP	A	A	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	48050392	A	T	48050392	2	4	194	1	0	0	0	0	0	0	0	1	5734	175	7	5		5	FBXO11	2	48050392	Silent	SNP	A	TCGA-B0-5702-01A-11D-1534-10		48050392	195148981	13	12203											
GALNT5	11227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	158165091	158165091	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	158165091	A	C	158165091	3	2	194	1	0	0	0	0	1	0	0	0	6223	362	13	5	2567	5	GALNT5	2	158165091	Missense_Mutation	SNP	A	TCGA-B0-5702-01A-11D-1534-10	110114699	158165091	85034282	14	12204											
UBR3	130507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170806129	170806129	+	Silent	SNP	T	T	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	170806129	T	C	170806129	2	2	194	1	0	0	0	0	0	0	0	1	16915	1538	54	3		3	UBR3	2	170806129	Silent	SNP	T	TCGA-B0-5702-01A-11D-1534-10	12641038	170806129	72393244	15	12205	149	2									
UBR3	130507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170806130	170806130	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	170806130	C	T	170806130	4	4	194	1	0	0	0	0	0	1	0	0	16915	827	29	2	3190	2	UBR3	2	170806130	Nonsense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	1	170806130	72393243	16	12206	149	2									
PPARG	5468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	12434123	12434123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	12434123	G	A	12434123	3	1	194	1	0	0	0	0	1	0	0	0	12306	1116	39	1	505	1	PPARG	3	12434123	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10		12434123	185588307	17	12207											
CSRNP1	64651	broad.mit.edu;ucsc.edu	37	3	39185098	39185098	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	39185098	A	A	39185098	3	1	194	1	0	0	0	0	1	0	0	0	3965	680	24	4	555	4	CSRNP1	3	39185098	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	26750975	39185098	158837332	18	12208											
LRRC33	375387	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	196387147	196387147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	196387147	C	A	196387147	3	1	194	1	0	0	0	0	1	0	0	0	8995	506	18	4	639	4	LRRC33	3	196387147	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	157202049	196387147	1635283	19	12209											
PRDM9	56979	broad.mit.edu	37	5	23527472	23527472	+	Missense_Mutation	SNP	G	A	A	rs112666693		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	23527472	A	A	23527472	3	1	194	1	0	0	0	0	1	0	0	0	12473	1058	37	1	2313	1	PRDM9	5	23527472	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10		23527472	157387788	20	12210											
BRPF3	27154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36177586	36177586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	36177586	T	C	36177586	3	2	194	1	0	0	0	0	1	0	0	0	1523	1464	51	3	1774	3	BRPF3	6	36177586	Missense_Mutation	SNP	T	TCGA-B0-5702-01A-11D-1534-10		36177586	134937481	21	12211											
PSD3	23362	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	18413784	18413784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	18413784	C	A	18413784	3	1	194	1	0	0	0	0	1	0	0	0	12658	884	31	4	288	4	PSD3	8	18413784	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10		18413784	127950238	22	12212											
XPO7	23039	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	21827777	21827777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	21827777	T	A	21827777	3	1	194	1	0	0	0	0	1	0	0	0	17461	1522	53	5	421	5	XPO7	8	21827777	Missense_Mutation	SNP	T	TCGA-B0-5702-01A-11D-1534-10	3413993	21827777	124536245	23	12213											
KCNU1	157855	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	36790510	36790510	+	Silent	SNP	C	C	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	36790510	C	A	36790510	2	1	194	1	0	0	0	0	0	0	0	1	8100	644	23	4		4	KCNU1	8	36790510	Silent	SNP	C	TCGA-B0-5702-01A-11D-1534-10	14962733	36790510	109573512	24	12214											
CLVS1	157807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	62412012	62412012	+	Splice_Site	SNP	A	A	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	62412012	A	T	62412012	5	4	194	1	0	0	0	0	0	0	1	0	3573	434	15	5	994	5	CLVS1	8	62412012	Splice_Site	SNP	A	TCGA-B0-5702-01A-11D-1534-10	25621502	62412012	83952010	25	12215											
TATDN1	83940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125535229	125535229	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	125535229	A	C	125535229	3	2	194	1	0	0	0	0	1	0	0	0	15603	69	3	5	900	5	TATDN1	8	125535229	Missense_Mutation	SNP	A	TCGA-B0-5702-01A-11D-1534-10	63123217	125535229	20828793	26	12216											
PIGO	84720	broad.mit.edu;ucsc.edu	37	9	35090534	35090534	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	G	35090534	G	G	35090534	3	3	194	1	0	0	0	0	1	0	0	0	11901	1464	51	5	502	5	PIGO	9	35090534	Missense_Mutation	SNP	T	TCGA-B0-5702-01A-11D-1534-10		35090534	106122897	27	12217											
C9orf89	84270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95874559	95874559	+	Missense_Mutation	SNP	T	T	A	rs147126180	alternate_allele	TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	95874559	T	A	95874559	3	1	194	1	0	0	0	0	1	0	0	0	2505	1580	55	5	442	5	C9orf89	9	95874559	Missense_Mutation	SNP	T	TCGA-B0-5702-01A-11D-1534-10	60784025	95874559	45338872	28	12218											
RRM1	6240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4133183	4133183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	4133183	G	A	4133183	3	1	194	1	0	0	0	0	1	0	0	0	13694	943	33	2	567	2	RRM1	11	4133183	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10		4133183	130873333	29	12219											
OR52I1	390037	broad.mit.edu;ucsc.edu	37	11	4616186	4616186	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	4616186	C	C	4616186	3	2	194	1	0	0	0	0	1	0	0	0	11127	991	35	4	920	4	OR52I1	11	4616186	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10	483003	4616186	130390330	30	12220											
CCKBR	887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6290923	6290923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	6290923	C	T	6290923	3	4	194	1	0	0	0	0	1	0	0	0	2883	565	20	2	182	2	CCKBR	11	6290923	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	1674737	6290923	128715593	31	12221											
ELP4	26610	broad.mit.edu	37	11	31541630	31541630	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	31541630	C	C	31541630	3	2	194	1	0	0	0	0	1	0	0	0	5084	1609	56	3	257	3	ELP4	11	31541630	Missense_Mutation	SNP	T	TCGA-B0-5702-01A-11D-1534-10	25250707	31541630	103464886	32	12222											
ATF7IP	55729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14577910	14577910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	14577910	C	T	14577910	3	4	194	1	0	0	0	0	1	0	0	0	1087	478	17	2	1063	2	ATF7IP	12	14577910	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10		14577910	119273985	33	12223											
KRT7	3855	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52629134	52629134	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	52629134	G	T	52629134	4	4	194	1	0	0	0	0	0	1	0	0	8490	1175	41	4	526	4	KRT7	12	52629134	Nonsense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10	38051224	52629134	81222761	34	12224											
MDM1	56890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	68720392	68720392	+	Silent	SNP	G	G	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	68720392	G	A	68720392	2	1	194	1	0	0	0	0	0	0	0	1	9419	1281	45	2		2	MDM1	12	68720392	Silent	SNP	G	TCGA-B0-5702-01A-11D-1534-10	16091258	68720392	65131503	35	12225											
BBS10	79738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	76740157	76740157	+	Silent	SNP	A	A	G	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	G	76740157	A	G	76740157	2	3	194	1	0	0	0	0	0	0	0	1	1336	108	4	3		3	BBS10	12	76740157	Silent	SNP	A	TCGA-B0-5702-01A-11D-1534-10	8019765	76740157	57111738	36	12226											
EEA1	8411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	93202807	93202807	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	93202807	T	A	93202807	3	1	194	1	0	0	0	0	1	0	0	0	4923	1838	64	5	1958	5	EEA1	12	93202807	Missense_Mutation	SNP	T	TCGA-B0-5702-01A-11D-1534-10	16462650	93202807	40649088	37	12227											
KLHDC1	122773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	50206889	50206889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	50206889	G	A	50206889	3	1	194	1	0	0	0	0	1	0	0	0	8361	1319	46	2	1012	2	KLHDC1	14	50206889	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10		50206889	57142651	38	12228											
IGDCC3	9543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65628159	65628159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	65628159	T	A	65628159	3	1	194	1	0	0	0	0	1	0	0	0	7575	1667	58	5	1947	5	IGDCC3	15	65628159	Missense_Mutation	SNP	T	TCGA-B0-5702-01A-11D-1534-10		65628159	36903233	39	12229											
CYP1A2	1544	broad.mit.edu	37	15	75047169	75047169	+	Missense_Mutation	SNP	C	T	T	rs28399424	bycluster;byfrequency	TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	75047169	T	T	75047169	3	4	194	1	0	0	0	0	1	0	0	0	4152	759	27	1	1313	1	CYP1A2	15	75047169	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	9419010	75047169	27484223	40	12230											
ITPRIPL2	162073	broad.mit.edu	37	16	19127313	19127313	+	Silent	SNP	C	T	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	19127313	T	T	19127313	2	4	194	1	0	0	0	0	0	0	0	1	7932	547	19	1		1	ITPRIPL2	16	19127313	Silent	SNP	C	TCGA-B0-5702-01A-11D-1534-10		19127313	71227440	41	12231											
PHKB	5257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	47698832	47698832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	47698832	A	C	47698832	3	2	194	1	0	0	0	0	1	0	0	0	11852	98	4	5	2530	5	PHKB	16	47698832	Missense_Mutation	SNP	A	TCGA-B0-5702-01A-11D-1534-10	28571519	47698832	42655921	42	12232											
FTSJD1	55783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71319019	71319019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	71319019	C	T	71319019	3	4	194	1	0	0	0	0	1	0	0	0	6097	652	23	1	1511	1	FTSJD1	16	71319019	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	23620187	71319019	19035734	43	12233											
DHRS13	147015	broad.mit.edu;ucsc.edu	37	17	27225663	27225663	+	Silent	SNP	C	T	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	27225663	T	T	27225663	2	4	194	1	0	0	0	0	0	0	0	1	4491	581	21	2		2	DHRS13	17	27225663	Silent	SNP	C	TCGA-B0-5702-01A-11D-1534-10		27225663	53969547	44	12234											
ACLY	47	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40054059	40054059	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	40054059	C	A	40054059	4	1	194	1	0	0	0	0	0	1	0	0	143	835	29	4	2001	4	ACLY	17	40054059	Nonsense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	12828396	40054059	41141151	45	12235											
KCNH4	23415	broad.mit.edu	37	17	40315894	40315894	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	-	40315894	-	-	40315894	7	5	194	1	0	1	0	1	0	0	0	0	8041	507	18	0	862	0	KCNH4	17	40315894	Frame_Shift_Del	DEL	C	TCGA-B0-5702-01A-11D-1534-10	261835	40315894	40879316	46	12236											
NBR1	4077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41345527	41345527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	41345527	C	A	41345527	3	1	194	1	0	0	0	0	1	0	0	0	10207	595	21	4	1438	4	NBR1	17	41345527	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	1029633	41345527	39849683	47	12237											
LAMA3	3909	hgsc.bcm.edu	37	18	21441744	21441744	+	Silent	SNP	C	C	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	21441744	C	A	21441744	2	1	194	1	0	0	0	0	0	0	0	1	8614	871	31	4		4	LAMA3	18	21441744	Silent	SNP	C	TCGA-B0-5702-01A-11D-1534-10		21441744	56635504	48	12238											
LAMA3	3909	broad.mit.edu;ucsc.edu	37	18	21508604	21508604	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	21508604	C	C	21508604	3	2	194	1	0	0	0	0	1	0	0	0	8614	1551	54	3	8740	3	LAMA3	18	21508604	Missense_Mutation	SNP	T	TCGA-B0-5702-01A-11D-1534-10	66860	21508604	56568644	49	12239											
DPP9	91039	hgsc.bcm.edu	37	19	4703896	4703916	+	In_Frame_Del	DEL	ACCTTGGTGGCAGAAGGTCAG	ACCTTGGTGGCAGAAGGTCAG	-	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	ACCTTGGTGGCAGAAGGTCAG	ACCTTGGTGGCAGAAGGTCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	-	4703916	ACCTTGGTGGCAGAAGGTCAG	-	4703896	7	5	194	1	0	1	0	1	0	0	0	0	4735	173	6	0	1971	0	DPP9	19	4703896	In_Frame_Del	DEL	ACCTTGGTGGCAGAAGGTCAG	TCGA-B0-5702-01A-11D-1534-10		4703896	54425087	50	12240											
SMARCA4	6597	broad.mit.edu	37	19	11132522	11132522	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	11132522	A	A	11132522	3	1	194	1	0	0	0	0	1	0	0	0	14783	652	23	4	2808	4	SMARCA4	19	11132522	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	6428626	11132522	47996461	51	12241											
PRKCSH	5589	broad.mit.edu	37	19	11558317	11558317	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	11558317	T	T	11558317	3	4	194	1	0	0	0	0	1	0	0	0	12526	739	26	2	951	2	PRKCSH	19	11558317	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	425795	11558317	47570666	52	12242											
PLA2G4C	8605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	48608631	48608631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	48608631	C	A	48608631	3	1	194	1	0	0	0	0	1	0	0	0	12010	478	17	4	1610	4	PLA2G4C	19	48608631	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	37050314	48608631	10520352	53	12243											
C20orf186	0	broad.mit.edu;ucsc.edu	37	20	31671267	31671267	+	Silent	SNP	T	C	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	31671267	C	C	31671267	2	2	194	1	0	0	0	0	0	0	0	1	2100	1654	58	3		3	C20orf186	20	31671267	Silent	SNP	T	TCGA-B0-5702-01A-11D-1534-10		31671267	31354253	54	12244											
PARD6B	84612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	49366295	49366295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	G	49366295	A	G	49366295	3	3	194	1	0	0	0	0	1	0	0	0	11453	217	8	3	399	3	PARD6B	20	49366295	Missense_Mutation	SNP	A	TCGA-B0-5702-01A-11D-1534-10	17695028	49366295	13659225	55	12245											
CABIN1	23523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24432627	24432627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	G	24432627	C	G	24432627	3	3	194	1	0	0	0	0	1	0	0	0	2530	827	29	4	100	4	CABIN1	22	24432627	Missense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10		24432627	26871939	56	12246											
XPNPEP3	63929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	41310325	41310325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	41310325	G	A	41310325	3	1	194	1	0	0	0	0	1	0	0	0	17456	1203	42	2	1078	2	XPNPEP3	22	41310325	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10	16877698	41310325	9994241	57	12247											
MOV10L1	54456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50558941	50558941	+	Nonsense_Mutation	SNP	C	C	T	rs150693045	by1000genomes	TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	T	50558941	C	T	50558941	4	4	194	1	0	0	0	0	0	1	0	0	9726	528	19	1	1544	1	MOV10L1	22	50558941	Nonsense_Mutation	SNP	C	TCGA-B0-5702-01A-11D-1534-10	9248616	50558941	745625	58	12248											
P2RY8	286530	hgsc.bcm.edu;ucsc.edu	37	X	1585213	1585213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	G	1585213	A	G	1585213	3	3	194	1	0	0	0	0	1	0	0	0	11362	333	12	3	844	3	P2RY8	23	1585213	Missense_Mutation	SNP	A	TCGA-B0-5702-01A-11D-1534-10		1585213	153685347	59	12249											
FRMPD4	9758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	12734955	12734955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	12734955	G	A	12734955	3	1	194	1	0	0	0	0	1	0	0	0	6066	1290	45	2	2435	2	FRMPD4	23	12734955	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10	11149742	12734955	142535605	60	12250											
MAP7D2	256714	broad.mit.edu	37	X	20074911	20074911	+	Splice_Site	SNP	T	C	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	20074911	C	C	20074911	5	2	194	1	0	0	0	0	0	0	1	0	9275	1536	53	3	2002	3	MAP7D2	23	20074911	Splice_Site	SNP	T	TCGA-B0-5702-01A-11D-1534-10	7339956	20074911	135195649	61	12251											
SLC9A7	84679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	46522060	46522060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	46522060	A	C	46522060	3	2	194	1	0	0	0	0	1	0	0	0	14732	14	1	5	1413	5	SLC9A7	23	46522060	Missense_Mutation	SNP	A	TCGA-B0-5702-01A-11D-1534-10	26447149	46522060	108748500	62	12252											
ACRC	93953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	70824235	70824235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	70824235	G	A	70824235	3	1	194	1	0	0	0	0	1	0	0	0	171	1319	46	2	1134	2	ACRC	23	70824235	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10	24302175	70824235	84446325	63	12253											
TCEAL3	85012	broad.mit.edu;hgsc.bcm.edu	37	X	102864047	102864047	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	C	102864047	G	C	102864047	3	2	194	1	0	0	0	0	1	0	0	0	15684	943	33	4	57	4	TCEAL3	23	102864047	Missense_Mutation	SNP	G	TCGA-B0-5702-01A-11D-1534-10	32039812	102864047	52406513	64	12254											
MORC4	79710	hgsc.bcm.edu;ucsc.edu	37	X	106236587	106236588	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	A	106236588	-	A	106236587	7	5	194	1	0	1	1	0	0	0	0	0	9711	710	25	0	2692	0	MORC4	23	106236587	Frame_Shift_Ins	INS	-	TCGA-B0-5702-01A-11D-1534-10	3372540	106236587	49033973	65	12255											
MAGEC1	9947	hgsc.bcm.edu	37	X	140993904	140993906	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-B0-5702-01A-11D-1534-10	TCGA-B0-5702-11A-01D-1534-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	780b3f3e-1c49-40de-9131-65c4df9ebba6	abcf3dd7-5e80-4f2d-a516-fb71ad14f79d	-	140993906	CCC	-	140993904	7	5	194	1	0	1	0	1	0	0	0	0	9187	738	26	0	720	0	MAGEC1	23	140993904	In_Frame_Del	DEL	CCC	TCGA-B0-5702-01A-11D-1534-10	34757317	140993904	14276656	66	12256											
KIAA1751	85452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	1888064	1888064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	1888064	T	G	1888064	3	3	195	1	0	0	0	0	1	0	0	0	8263	1792	62	5	285	5	KIAA1751	1	1888064	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10		1888064	247362557	1	12257											
CAPZA1	829	broad.mit.edu;ucsc.edu	37	1	113192053	113192053	+	Silent	SNP	A	T	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	113192053	T	T	113192053	2	4	195	1	0	0	0	0	0	0	0	1	2642	378	14	5		5	CAPZA1	1	113192053	Silent	SNP	A	TCGA-B0-5703-01A-11D-1534-10	111303989	113192053	136058568	2	12258											
SPAG17	200162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	118584465	118584465	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	118584465	T	-	118584465	7	5	195	1	0	1	0	1	0	0	0	0	14992	1606	56	0	3768	0	SPAG17	1	118584465	Frame_Shift_Del	DEL	T	TCGA-B0-5703-01A-11D-1534-10	5392412	118584465	130666156	3	12259											
TCHH	7062	broad.mit.edu;ucsc.edu	37	1	152083904	152083904	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	152083904	C	C	152083904	3	2	195	1	0	0	0	0	1	0	0	0	15712	1550	54	3	4046	3	TCHH	1	152083904	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	33499439	152083904	97166717	4	12260											
IVL	3713	hgsc.bcm.edu;ucsc.edu	37	1	152882534	152882545	+	In_Frame_Del	DEL	GCAGCAACAGCA	GCAGCAACAGCA	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	GCAGCAACAGCA	GCAGCAACAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	152882545	GCAGCAACAGCA	-	152882534	7	5	195	1	0	1	0	1	0	0	0	0	7936	1306	46	0	263	0	IVL	1	152882534	In_Frame_Del	DEL	GCAGCAACAGCA	TCGA-B0-5703-01A-11D-1534-10	798630	152882534	96368087	5	12261			1	19		2	2	13	N	GCAGCAACAGCA_-	2.984766e-05
IVL	3713	hgsc.bcm.edu;ucsc.edu	37	1	152882546	152882547	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	152882547	-	T	152882546	7	5	195	1	0	1	1	0	0	0	0	0	7936	564	20	0	275	0	IVL	1	152882546	Frame_Shift_Ins	INS	-	TCGA-B0-5703-01A-11D-1534-10	12	152882546	96368075	6	12262			1	19		2	2	13	N	GCAGCAACAGCA_-	2.984766e-05
F5	2153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169528479	169528479	+	Silent	SNP	T	T	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	169528479	T	C	169528479	2	2	195	1	0	0	0	0	0	0	0	1	5350	1393	49	3		3	F5	1	169528479	Silent	SNP	T	TCGA-B0-5703-01A-11D-1534-10	16645933	169528479	79722142	7	12263											
CRB1	23418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197404477	197404477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	197404477	C	A	197404477	3	1	195	1	0	0	0	0	1	0	0	0	3850	826	29	4	3518	4	CRB1	1	197404477	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10	27875998	197404477	51846144	8	12264											
RGS7	6000	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	240969479	240969479	+	Silent	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	240969479	G	A	240969479	2	1	195	1	0	0	0	0	0	0	0	1	13323	1136	40	1		1	RGS7	1	240969479	Silent	SNP	G	TCGA-B0-5703-01A-11D-1534-10	43565002	240969479	8281142	9	12265											
ASAP2	8853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	9484692	9484692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	9484692	G	A	9484692	3	1	195	1	0	0	0	0	1	0	0	0	1011	971	34	2	919	2	ASAP2	2	9484692	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10		9484692	233714681	10	12266											
PCYOX1	51449	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	70502693	70502693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	70502693	G	T	70502693	3	4	195	1	0	0	0	0	1	0	0	0	11615	1000	35	4	772	4	PCYOX1	2	70502693	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10	61018001	70502693	172696680	11	12267											
RMND5A	64795	broad.mit.edu;hgsc.bcm.edu	37	2	86980658	86980658	+	Silent	SNP	C	C	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	86980658	C	T	86980658	2	4	195	1	0	0	0	0	0	0	0	1	13410	813	29	2		2	RMND5A	2	86980658	Silent	SNP	C	TCGA-B0-5703-01A-11D-1534-10	16477965	86980658	156218715	12	12268											
MAP3K2	10746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128066283	128066283	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	128066283	G	-	128066283	7	5	195	1	0	1	0	1	0	0	0	0	9257	1335	47	0	355	0	MAP3K2	2	128066283	Frame_Shift_Del	DEL	G	TCGA-B0-5703-01A-11D-1534-10	41085625	128066283	115133090	13	12269											
DPP4	1803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	162902066	162902066	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	162902066	A	C	162902066	3	2	195	1	0	0	0	0	1	0	0	0	4731	242	9	5	2046	5	DPP4	2	162902066	Missense_Mutation	SNP	A	TCGA-B0-5703-01A-11D-1534-10	34835783	162902066	80297307	14	12270											
PGAP1	80055	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	197777686	197777686	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	197777686	T	G	197777686	3	3	195	1	0	0	0	0	1	0	0	0	11784	1609	56	5	2295	5	PGAP1	2	197777686	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	34875620	197777686	45421687	15	12271											
KIF1A	547	broad.mit.edu;ucsc.edu	37	2	241662861	241662861	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	241662861	T	T	241662861	4	4	195	1	0	0	0	0	0	1	0	0	8290	595	21	2	974	2	KIF1A	2	241662861	Nonsense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10	43885175	241662861	1536512	16	12272											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191558	10191558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	10191558	T	C	10191558	3	2	195	1	0	0	0	0	1	0	0	0	17174	1551	54	3	561	3	VHL	3	10191558	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10		10191558	187830872	17	12273											
XIRP1	165904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	39227553	39227553	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	39227553	G	-	39227553	7	5	195	1	0	1	0	1	0	0	0	0	17441	1335	47	0	2151	0	XIRP1	3	39227553	Frame_Shift_Del	DEL	G	TCGA-B0-5703-01A-11D-1534-10	29035995	39227553	158794877	18	12274											
PBRM1	55193	hgsc.bcm.edu	37	3	52678784	52678784	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	52678784	T	-	52678784	7	5	195	1	0	1	0	1	0	0	0	0	11498	1493	52	0	4157	0	PBRM1	3	52678784	Frame_Shift_Del	DEL	T	TCGA-B0-5703-01A-11D-1534-10	13451231	52678784	145343646	19	12275											
SI	6476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	164754179	164754179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	164754179	T	G	164754179	3	3	195	1	0	0	0	0	1	0	0	0	14310	1841	64	5	3078	5	SI	3	164754179	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	112075395	164754179	33268251	20	12276											
MUC4	4585	hgsc.bcm.edu	37	3	195506281	195506281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	195506281	A	G	195506281	3	3	195	1	0	0	0	0	1	0	0	0	9985	372	13	3		3	MUC4	3	195506281	Missense_Mutation	SNP	A	TCGA-B0-5703-01A-11D-1534-10	30752102	195506281	2516149	21	12277											
DOK7	285489	broad.mit.edu;ucsc.edu	37	4	3478155	3478155	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	3478155	G	G	3478155	3	3	195	1	0	0	0	0	1	0	0	0	4704	1606	56	5	432	5	DOK7	4	3478155	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10		3478155	187676121	22	12278											
ODZ3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	183714853	183714853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	183714853	A	G	183714853	3	3	195	1	0	0	0	0	1	0	0	0	10843	449	16	3	7126	3	ODZ3	4	183714853	Missense_Mutation	SNP	A	TCGA-B0-5703-01A-11D-1534-10	180236698	183714853	7439423	23	12279											
CLPTM1L	81037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	1331925	1331925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	1331925	G	A	1331925	3	1	195	1	0	0	0	0	1	0	0	0	3557	1174	41	2	691	2	CLPTM1L	5	1331925	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10		1331925	179583335	24	12280											
MARCH6	10299	broad.mit.edu;ucsc.edu	37	5	10407230	10407230	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	10407230	C	C	10407230	3	2	195	1	0	0	0	0	1	0	0	0	9312	1493	52	3	1535	3	MARCH6	5	10407230	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	9075305	10407230	170508030	25	12281											
AGGF1	55109	broad.mit.edu	37	5	76348572	76348572	+	Silent	SNP	T	C	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	76348572	C	C	76348572	2	2	195	1	0	0	0	0	0	0	0	1	382	1471	51	3		3	AGGF1	5	76348572	Silent	SNP	T	TCGA-B0-5703-01A-11D-1534-10	65941342	76348572	104566688	26	12282											
TGFBI	7045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	135382106	135382106	+	Silent	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	135382106	G	A	135382106	2	1	195	1	0	0	0	0	0	0	0	1	15832	962	34	2		2	TGFBI	5	135382106	Silent	SNP	G	TCGA-B0-5703-01A-11D-1534-10	59033534	135382106	45533154	27	12283	150	2									
TGFBI	7045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	135382107	135382107	+	Silent	SNP	C	C	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	135382107	C	T	135382107	2	4	195	1	0	0	0	0	0	0	0	1	15832	796	28	2		2	TGFBI	5	135382107	Silent	SNP	C	TCGA-B0-5703-01A-11D-1534-10	1	135382107	45533153	28	12284	150	2									
CNOT6	57472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179994125	179994125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	179994125	T	C	179994125	3	2	195	1	0	0	0	0	1	0	0	0	3624	1638	57	3	781	3	CNOT6	5	179994125	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	44612018	179994125	921135	29	12285											
HIST1H1A	3024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	26017495	26017495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	26017495	C	A	26017495	3	1	195	1	0	0	0	0	1	0	0	0	7129	739	26	4	185	4	HIST1H1A	6	26017495	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10		26017495	145097572	30	12286											
MAPK14	1432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36043701	36043701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	36043701	C	A	36043701	3	1	195	1	0	0	0	0	1	0	0	0	9283	681	24	4	598	4	MAPK14	6	36043701	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10	10026206	36043701	135071366	31	12287											
SUPT3H	8464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44921067	44921067	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	44921067	G	C	44921067	3	2	195	1	0	0	0	0	1	0	0	0	15409	1299	45	4	184	4	SUPT3H	6	44921067	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10	8877366	44921067	126194000	32	12288											
FAM46A	55603	broad.mit.edu	37	6	82461713	82461713	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	82461713	-	-	82461713	7	5	195	1	0	1	0	1	0	0	0	0	5572	507	18	0	1190	0	FAM46A	6	82461713	Frame_Shift_Del	DEL	C	TCGA-B0-5703-01A-11D-1534-10	37540646	82461713	88653354	33	12289											
PTPRZ1	5803	broad.mit.edu;hgsc.bcm.edu	37	7	121637955	121637955	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	121637955	C	G	121637955	3	3	195	1	0	0	0	0	1	0	0	0	12827	796	28	4	1173	4	PTPRZ1	7	121637955	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10		121637955	37500708	34	12290											
PLXNA4	91584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	131866156	131866156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	131866156	G	A	131866156	3	1	195	1	0	0	0	0	1	0	0	0	12129	1145	40	1	2268	1	PLXNA4	7	131866156	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10	10228201	131866156	27272507	35	12291											
TAS2R39	259285	hgsc.bcm.edu;ucsc.edu	37	7	142881197	142881197	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	142881197	C	-	142881197	7	5	195	1	0	1	0	1	0	0	0	0	15588	507	18	0	688	0	TAS2R39	7	142881197	Frame_Shift_Del	DEL	C	TCGA-B0-5703-01A-11D-1534-10	11015041	142881197	16257466	36	12292											
GPR124	25960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	37688398	37688398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	37688398	C	T	37688398	3	4	195	1	0	0	0	0	1	0	0	0	6645	681	24	2	894	2	GPR124	8	37688398	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10		37688398	108675624	37	12293											
RP1	6101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	55540593	55540593	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	55540593	T	G	55540593	3	3	195	1	0	0	0	0	1	0	0	0	13545	1841	64	5	4161	5	RP1	8	55540593	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	17852195	55540593	90823429	38	12294											
TMC1	117531	hgsc.bcm.edu;ucsc.edu	37	9	75309453	75309471	+	In_Frame_Del	DEL	GTTTAGGTGAAGAGGAAGA	GTTTAGGTGAAGAGGAAGA	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	GTTTAGGTGAAGAGGAAGA	GTTTAGGTGAAGAGGAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	75309471	GTTTAGGTGAAGAGGAAGA	-	75309453	7	5	195	1	0	1	0	1	0	0	0	0	15996	1392	48	0		0	TMC1	9	75309453	In_Frame_Del	DEL	GTTTAGGTGAAGAGGAAGA	TCGA-B0-5703-01A-11D-1534-10		75309453	65903978	39	12295											
PRUNE2	158471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	79325303	79325303	+	Silent	SNP	G	G	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	79325303	G	T	79325303	2	4	195	1	0	0	0	0	0	0	0	1	12651	929	33	4		4	PRUNE2	9	79325303	Silent	SNP	G	TCGA-B0-5703-01A-11D-1534-10	4015850	79325303	61888128	40	12296											
EPB41L4B	54566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	112005948	112005948	+	Silent	SNP	A	A	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	112005948	A	G	112005948	2	3	195	1	0	0	0	0	0	0	0	1	5158	407	15	3		3	EPB41L4B	9	112005948	Silent	SNP	A	TCGA-B0-5703-01A-11D-1534-10	32680645	112005948	29207483	41	12297											
DNAJC1	64215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	22193512	22193512	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	22193512	T	-	22193512	7	5	195	1	0	1	0	1	0	0	0	0	4630	1606	56	0	929	0	DNAJC1	10	22193512	Frame_Shift_Del	DEL	T	TCGA-B0-5703-01A-11D-1534-10		22193512	113341235	42	12298											
SIRT1	23411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	69651246	69651246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	69651246	T	A	69651246	3	1	195	1	0	0	0	0	1	0	0	0	14350	1432	50	5	890	5	SIRT1	10	69651246	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	47457734	69651246	65883501	43	12299	151	2									
SIRT1	23411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	69651247	69651247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	69651247	C	T	69651247	3	4	195	1	0	0	0	0	1	0	0	0	14350	855	30	2	891	2	SIRT1	10	69651247	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10	1	69651247	65883500	44	12300	151	2									
CNNM1	26507	broad.mit.edu;hgsc.bcm.edu	37	10	101151192	101151192	+	Splice_Site	SNP	A	A	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	101151192	A	G	101151192	5	3	195	1	0	0	0	0	0	0	1	0	3614	202	7	3	2817	3	CNNM1	10	101151192	Splice_Site	SNP	A	TCGA-B0-5703-01A-11D-1534-10	31499945	101151192	34383555	45	12301											
MKI67	4288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	129906122	129906122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	129906122	C	T	129906122	3	4	195	1	0	0	0	0	1	0	0	0	9605	652	23	1	5800	1	MKI67	10	129906122	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10	28754930	129906122	5628625	46	12302											
OR5AR1	219493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56431824	56431824	+	Silent	SNP	C	C	A	rs144241394	alternate_allele	TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	56431824	C	A	56431824	2	1	195	1	0	0	0	0	0	0	0	1	11152	845	30	4		4	OR5AR1	11	56431824	Silent	SNP	C	TCGA-B0-5703-01A-11D-1534-10		56431824	78574692	47	12303											
NPAT	4863	hgsc.bcm.edu;ucsc.edu	37	11	108056204	108056205	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	108056205	-	T	108056204	7	5	195	1	0	1	1	0	0	0	0	0	10573	214	8	0	3579	0	NPAT	11	108056204	Frame_Shift_Ins	INS	-	TCGA-B0-5703-01A-11D-1534-10	51624380	108056204	26950312	48	12304											
ATM	472	broad.mit.edu;ucsc.edu	37	11	108115600	108115600	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	108115600	T	T	108115600	4	4	195	1	0	0	0	0	0	1	0	0	1109	876	31	1	770	1	ATM	11	108115600	Nonsense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10	59396	108115600	26890916	49	12305											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108127062	108127062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	108127062	G	A	108127062	3	1	195	1	0	0	0	0	1	0	0	0	1109	971	34	2	2295	2	ATM	11	108127062	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10	11462	108127062	26879454	50	12306											
TAS2R43	259289	hgsc.bcm.edu	37	12	11244071	11244072	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	11244072	CC	-	11244071	7	5	195	1	0	1	0	1	0	0	0	0	15593	855	30	0	175	0	TAS2R43	12	11244071	Frame_Shift_Del	DEL	CC	TCGA-B0-5703-01A-11D-1534-10		11244071	122607824	51	12307											
GMFB	2764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	54948128	54948128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	54948128	G	A	54948128	3	1	195	1	0	0	0	0	1	0	0	0	6496	1072	37	1	245	1	GMFB	14	54948128	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10		54948128	52401412	52	12308											
KCNK10	54207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	88658594	88658594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	88658594	G	A	88658594	3	1	195	1	0	0	0	0	1	0	0	0	8066	1145	40	1	801	1	KCNK10	14	88658594	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10	33710466	88658594	18690946	53	12309											
CLMN	79789	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	95688029	95688029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	95688029	T	C	95688029	3	2	195	1	0	0	0	0	1	0	0	0	3544	1507	52	3	2725	3	CLMN	14	95688029	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	7029435	95688029	11661511	54	12310											
WDR25	79446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	100934461	100934461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	100934461	G	A	100934461	3	1	195	1	0	0	0	0	1	0	0	0	17294	1029	36	2	932	2	WDR25	14	100934461	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10	5246432	100934461	6415079	55	12311											
TLE3	7090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	70351055	70351055	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	70351055	A	T	70351055	3	4	195	1	0	0	0	0	1	0	0	0	15952	304	11	5	1493	5	TLE3	15	70351055	Missense_Mutation	SNP	A	TCGA-B0-5703-01A-11D-1534-10		70351055	32180337	56	12312											
CRAMP1L	57585	broad.mit.edu	37	16	1706867	1706867	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	1706867	-	-	1706867	7	5	195	1	0	1	0	1	0	0	0	0	3848	1335	47	0	2143	0	CRAMP1L	16	1706867	Frame_Shift_Del	DEL	G	TCGA-B0-5703-01A-11D-1534-10		1706867	88647886	57	12313											
DNAH3	55567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	21136611	21136611	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	21136611	G	C	21136611	4	2	195	1	0	0	0	0	0	1	0	0	4605	1294	45	4	11276	4	DNAH3	16	21136611	Nonsense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10	19429744	21136611	69218142	58	12314											
CCDC102A	92922	broad.mit.edu	37	16	57552045	57552047	+	In_Frame_Del	DEL	GCC	-	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	57552047	-	-	57552045	7	5	195	1	0	1	0	1	0	0	0	0	2738	1328	46	0	485	0	CCDC102A	16	57552045	In_Frame_Del	DEL	GCC	TCGA-B0-5703-01A-11D-1534-10	36415434	57552045	32802708	59	12315											
NFATC3	4775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68160480	68160480	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	68160480	A	-	68160480	7	5	195	1	0	1	0	1	0	0	0	0	10371	349	13	0	1378	0	NFATC3	16	68160480	Frame_Shift_Del	DEL	A	TCGA-B0-5703-01A-11D-1534-10	10608435	68160480	22194273	60	12316											
MYH2	4620	broad.mit.edu;hgsc.bcm.edu	37	17	10429940	10429940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	10429940	C	T	10429940	3	4	195	1	0	0	0	0	1	0	0	0	10042	768	27	1	1706	1	MYH2	17	10429940	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10		10429940	70765270	61	12317											
MFAP4	4239	hgsc.bcm.edu;ucsc.edu	37	17	19288733	19288734	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	19288734	AA	-	19288733	7	5	195	1	0	1	0	1	0	0	0	0	9524	246	9	0	504	0	MFAP4	17	19288733	Frame_Shift_Del	DEL	AA	TCGA-B0-5703-01A-11D-1534-10	8858793	19288733	61906477	62	12318											
ALDH3A1	218	broad.mit.edu	37	17	19641666	19641666	+	Silent	SNP	C	T	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	19641666	T	T	19641666	2	4	195	1	0	0	0	0	0	0	0	1	497	813	29	2		2	ALDH3A1	17	19641666	Silent	SNP	C	TCGA-B0-5703-01A-11D-1534-10	352933	19641666	61553544	63	12319											
ERAL1	26284	broad.mit.edu;ucsc.edu	37	17	27182269	27182269	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	27182269	C	C	27182269	3	2	195	1	0	0	0	0	1	0	0	0	5204	1609	56	3	219	3	ERAL1	17	27182269	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	7540603	27182269	54012941	64	12320											
C17orf75	64149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30660439	30660439	+	Silent	SNP	T	T	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	30660439	T	C	30660439	2	2	195	1	0	0	0	0	0	0	0	1	1882	1741	61	3		3	C17orf75	17	30660439	Silent	SNP	T	TCGA-B0-5703-01A-11D-1534-10	3478170	30660439	50534771	65	12321											
UNC45B	146862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33477188	33477188	+	Silent	SNP	G	G	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	33477188	G	A	33477188	2	1	195	1	0	0	0	0	0	0	0	1	17001	1161	41	2		2	UNC45B	17	33477188	Silent	SNP	G	TCGA-B0-5703-01A-11D-1534-10	2816749	33477188	47718022	66	12322											
CACNA1G	8913	hgsc.bcm.edu	37	17	48692779	48692787	+	In_Frame_Del	DEL	ACTTGTGCA	ACTTGTGCA	-	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	ACTTGTGCA	ACTTGTGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	-	48692787	ACTTGTGCA	-	48692779	7	5	195	1	0	1	0	1	0	0	0	0	2546	159	6	0	5190	0	CACNA1G	17	48692779	In_Frame_Del	DEL	ACTTGTGCA	TCGA-B0-5703-01A-11D-1534-10	15215591	48692779	32502431	67	12323											
DNAH17	8632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76421493	76421493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	76421493	T	C	76421493	3	2	195	1	0	0	0	0	1	0	0	0	4603	1792	62	3	321	3	DNAH17	17	76421493	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	27728714	76421493	4773717	68	12324											
PLIN4	729359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4510945	4510945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	A	4510945	T	A	4510945	3	1	195	1	0	0	0	0	1	0	0	0	12099	1606	56	5	1104	5	PLIN4	19	4510945	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10		4510945	54618038	69	12325											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9000513	9000513	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	9000513	G	C	9000513	3	2	195	1	0	0	0	0	1	0	0	0	9980	1086	38	4	3176	4	MUC16	19	9000513	Missense_Mutation	SNP	G	TCGA-B0-5703-01A-11D-1534-10	4489568	9000513	50128470	70	12326											
SUPT5H	6829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39965287	39965287	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	39965287	C	T	39965287	4	4	195	1	0	0	0	0	0	1	0	0	15411	827	29	2	3059	2	SUPT5H	19	39965287	Nonsense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10	30964774	39965287	19163696	71	12327											
SIRPB1	10326	broad.mit.edu;hgsc.bcm.edu	37	20	1552666	1552666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	T	1552666	C	T	1552666	3	4	195	1	0	0	0	0	1	0	0	0	14346	536	19	1	757	1	SIRPB1	20	1552666	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10		1552666	61472854	72	12328											
RRBP1	6238	broad.mit.edu	37	20	17640580	17640580	+	Silent	SNP	T	G	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	17640580	G	G	17640580	2	3	195	1	0	0	0	0	0	0	0	1	13691	1711	59	5		5	RRBP1	20	17640580	Silent	SNP	T	TCGA-B0-5703-01A-11D-1534-10	16087914	17640580	45384940	73	12329											
TOP1	7150	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39741521	39741521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	39741521	A	G	39741521	3	3	195	1	0	0	0	0	1	0	0	0	16375	333	12	3	1462	3	TOP1	20	39741521	Missense_Mutation	SNP	A	TCGA-B0-5703-01A-11D-1534-10	22100941	39741521	23283999	74	12330											
CTSA	5476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44521907	44521907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	44521907	T	C	44521907	3	2	195	1	0	0	0	0	1	0	0	0	4031	1551	54	3	729	3	CTSA	20	44521907	Missense_Mutation	SNP	T	TCGA-B0-5703-01A-11D-1534-10	4780386	44521907	18503613	75	12331											
PMEPA1	56937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	56227136	56227136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	G	56227136	C	G	56227136	3	3	195	1	0	0	0	0	1	0	0	0	12139	680	24	4	30	4	PMEPA1	20	56227136	Missense_Mutation	SNP	C	TCGA-B0-5703-01A-11D-1534-10	11705229	56227136	6798384	76	12332											
PRAME	23532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	22893221	22893221	+	Silent	SNP	A	A	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	22893221	A	C	22893221	2	2	195	1	0	0	0	0	0	0	0	1	12434	117	5	5		5	PRAME	22	22893221	Silent	SNP	A	TCGA-B0-5703-01A-11D-1534-10		22893221	28411345	77	12333											
CRYBB1	1414	hgsc.bcm.edu	37	22	27012238	27012239	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	27012239	-	C	27012238	7	5	195	1	0	1	1	0	0	0	0	0	3912	1783	62	0	732	0	CRYBB1	22	27012238	Frame_Shift_Ins	INS	-	TCGA-B0-5703-01A-11D-1534-10	4119017	27012238	24292328	78	12334											
PIM3	415116	hgsc.bcm.edu;ucsc.edu	37	22	50356427	50356428	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5703-01A-11D-1534-10	TCGA-B0-5703-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	963400a2-d939-41a5-8c42-9fc3a04b8362	56994dd1-cfd6-4939-8c18-bbc52a633306	C	50356428	-	C	50356427	7	5	195	1	0	1	1	0	0	0	0	0	11936	391	14	0	725	0	PIM3	22	50356427	Frame_Shift_Ins	INS	-	TCGA-B0-5703-01A-11D-1534-10	23344189	50356427	948139	79	12335											
NOC2L	26155	broad.mit.edu;hgsc.bcm.edu	37	1	888619	888619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	888619	G	T	888619	3	4	196	1	0	0	0	0	1	0	0	0	10520	971	34	4	1355	4	NOC2L	1	888619	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10		888619	248362002	1	12336											
PLCH2	9651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	2435907	2435907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	2435907	G	A	2435907	3	1	196	1	0	0	0	0	1	0	0	0	12045	1145	40	1	3592	1	PLCH2	1	2435907	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	1547288	2435907	246814714	2	12337											
UBR4	23352	broad.mit.edu;ucsc.edu	37	1	19446815	19446815	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	19446815	C	C	19446815	3	2	196	1	0	0	0	0	1	0	0	0	16916	1580	55	3	5534	3	UBR4	1	19446815	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10	17010908	19446815	229803806	3	12338											
HSPG2	3339	hgsc.bcm.edu;ucsc.edu	37	1	22216599	22216600	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	22216600	-	C	22216599	7	5	196	1	0	1	1	0	0	0	0	0	7437	159	6	0	13094	0	HSPG2	1	22216599	Frame_Shift_Ins	INS	-	TCGA-B0-5705-01A-11D-1534-10	2769784	22216599	227034022	4	12339	152	2									
HSPG2	3339	hgsc.bcm.edu	37	1	22216602	22216602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	22216602	T	C	22216602	3	2	196	1	0	0	0	0	1	0	0	0	7437	1435	50	3	13097	3	HSPG2	1	22216602	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10	3	22216602	227034019	5	12340	152	2									
OPRD1	4985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	29185683	29185683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	29185683	G	A	29185683	3	1	196	1	0	0	0	0	1	0	0	0	10891	1087	38	1	451	1	OPRD1	1	29185683	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	6969081	29185683	220064938	6	12341											
INPP5B	3633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	38353034	38353034	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	38353034	T	G	38353034	3	3	196	1	0	0	0	0	1	0	0	0	7762	1821	63	5	1794	5	INPP5B	1	38353034	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10	9167351	38353034	210897587	7	12342											
RNF220	55182	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44878049	44878049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	44878049	C	A	44878049	3	1	196	1	0	0	0	0	1	0	0	0	13496	478	17	4	282	4	RNF220	1	44878049	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	6525015	44878049	204372572	8	12343											
PARS2	25973	broad.mit.edu	37	1	55224781	55224781	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	55224781	T	T	55224781	3	4	196	1	0	0	0	0	1	0	0	0	11474	1194	42	4	1377	4	PARS2	1	55224781	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	10346732	55224781	194025840	9	12344											
GBP2	2634	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	89582840	89582840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	89582840	C	T	89582840	3	4	196	1	0	0	0	0	1	0	0	0	6281	536	19	1	1096	1	GBP2	1	89582840	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	34358059	89582840	159667781	10	12345											
PHTF1	10745	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	114267480	114267480	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	114267480	C	G	114267480	3	3	196	1	0	0	0	0	1	0	0	0	11869	884	31	4	1816	4	PHTF1	1	114267480	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	24684640	114267480	134983141	11	12346											
SMG5	23381	broad.mit.edu;hgsc.bcm.edu	37	1	156243168	156243168	+	Silent	SNP	T	T	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	156243168	T	A	156243168	2	1	196	1	0	0	0	0	0	0	0	1	14809	1567	55	5		5	SMG5	1	156243168	Silent	SNP	T	TCGA-B0-5705-01A-11D-1534-10	41975688	156243168	93007453	12	12347											
CRB1	23418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197446956	197446956	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	197446956	C	T	197446956	4	4	196	1	0	0	0	0	0	1	0	0	3850	644	23	1	4214	1	CRB1	1	197446956	Nonsense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	41203788	197446956	51803665	13	12348											
FAM150B	285016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	283163	283163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	283163	C	A	283163	3	1	196	1	0	0	0	0	1	0	0	0	5461	710	25	4	65	4	FAM150B	2	283163	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10		283163	242916210	14	12349											
TIA1	7072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	70441538	70441538	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	70441538	C	G	70441538	3	3	196	1	0	0	0	0	1	0	0	0	15899	507	18	4	191	4	TIA1	2	70441538	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	70158375	70441538	172757835	15	12350											
KIAA1310	0	broad.mit.edu;hgsc.bcm.edu	37	2	97267383	97267383	+	Silent	SNP	T	T	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	97267383	T	C	97267383	2	2	196	1	0	0	0	0	0	0	0	1	8229	1683	59	3		3	KIAA1310	2	97267383	Silent	SNP	T	TCGA-B0-5705-01A-11D-1534-10	26825845	97267383	145931990	16	12351											
UGGT1	56886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128878020	128878020	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	128878020	G	A	128878020	4	1	196	1	0	0	0	0	0	1	0	0	16953	1212	42	2	997	2	UGGT1	2	128878020	Nonsense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	31610637	128878020	114321353	17	12352											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179634827	179634827	+	Silent	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	179634827	C	T	179634827	2	4	196	1	0	0	0	0	0	0	0	1	16747	581	21	2		2	TTN	2	179634827	Silent	SNP	C	TCGA-B0-5705-01A-11D-1534-10	50756807	179634827	63564546	18	12353											
CCDC108	255101	broad.mit.edu;ucsc.edu	37	2	219886632	219886632	+	Silent	SNP	G	C	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	219886632	C	C	219886632	2	2	196	1	0	0	0	0	0	0	0	1	2745	987	35	4		4	CCDC108	2	219886632	Silent	SNP	G	TCGA-B0-5705-01A-11D-1534-10	40251805	219886632	23312741	19	12354											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191570	10191570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	10191570	T	C	10191570	3	2	196	1	0	0	0	0	1	0	0	0	17174	1580	55	3	573	3	VHL	3	10191570	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10		10191570	187830860	20	12355											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52651383	52651383	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	-	52651383	A	-	52651383	7	5	196	1	0	1	0	1	0	0	0	0	11498	126	5	0	3255	0	PBRM1	3	52651383	Frame_Shift_Del	DEL	A	TCGA-B0-5705-01A-11D-1534-10	42459813	52651383	145371047	21	12356											
STXBP5L	9515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121137382	121137382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	121137382	C	T	121137382	3	4	196	1	0	0	0	0	1	0	0	0	15369	710	25	2	3599	2	STXBP5L	3	121137382	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	68485999	121137382	76885048	22	12357											
SH3TC1	54436	hgsc.bcm.edu;ucsc.edu	37	4	8218768	8218768	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	-	8218768	G	-	8218768	7	5	196	1	0	1	0	1	0	0	0	0	14274	1000	35	0	735	0	SH3TC1	4	8218768	Frame_Shift_Del	DEL	G	TCGA-B0-5705-01A-11D-1534-10		8218768	182935508	23	12358											
CHRNA9	55584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	40356027	40356027	+	Silent	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	40356027	C	T	40356027	2	4	196	1	0	0	0	0	0	0	0	1	3391	816	29	2		2	CHRNA9	4	40356027	Silent	SNP	C	TCGA-B0-5705-01A-11D-1534-10	32137259	40356027	150798249	24	12359											
BMP3	651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	81967318	81967318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	81967318	C	T	81967318	3	4	196	1	0	0	0	0	1	0	0	0	1461	739	26	2	749	2	BMP3	4	81967318	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	41611291	81967318	109186958	25	12360											
CTNND2	1501	hgsc.bcm.edu;ucsc.edu	37	5	10988302	10988303	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	-	10988303	TG	-	10988302	7	5	196	1	0	1	0	1	0	0	0	0	4022	1567	55	0	425	0	CTNND2	5	10988302	Frame_Shift_Del	DEL	TG	TCGA-B0-5705-01A-11D-1534-10		10988302	169926958	26	12361											
IL6ST	3572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	55256363	55256363	+	Silent	SNP	G	G	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	55256363	G	T	55256363	2	4	196	1	0	0	0	0	0	0	0	1	7710	1219	43	4		4	IL6ST	5	55256363	Silent	SNP	G	TCGA-B0-5705-01A-11D-1534-10	44268061	55256363	125658897	27	12362											
CYFIP2	26999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	156753229	156753229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	156753229	T	C	156753229	3	2	196	1	0	0	0	0	1	0	0	0	4140	1580	55	3	2099	3	CYFIP2	5	156753229	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10	101496866	156753229	24162031	28	12363											
ZNF346	23567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176471492	176471492	+	Missense_Mutation	SNP	G	G	A	rs139233067		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	176471492	G	A	176471492	3	1	196	1	0	0	0	0	1	0	0	0	17872	1087	38	1	489	1	ZNF346	5	176471492	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	19718263	176471492	4443768	29	12364											
ADAMTS2	9509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	178555036	178555036	+	Silent	SNP	G	G	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	178555036	G	A	178555036	2	1	196	1	0	0	0	0	0	0	0	1	265	1136	40	1		1	ADAMTS2	5	178555036	Silent	SNP	G	TCGA-B0-5705-01A-11D-1534-10	2083544	178555036	2360224	30	12365											
ZNF318	24149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43308012	43308012	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	43308012	T	A	43308012	3	1	196	1	0	0	0	0	1	0	0	0	17848	1783	62	5	3119	5	ZNF318	6	43308012	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10		43308012	127807055	31	12366											
FOXO3	2309	broad.mit.edu	37	6	108985392	108985392	+	Silent	SNP	A	G	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	108985392	G	G	108985392	2	3	196	1	0	0	0	0	0	0	0	1	6031	69	3	3		3	FOXO3	6	108985392	Silent	SNP	A	TCGA-B0-5705-01A-11D-1534-10	65677380	108985392	62129675	32	12367											
OPRM1	4988	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	154412361	154412361	+	Silent	SNP	C	C	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	154412361	C	A	154412361	2	1	196	1	0	0	0	0	0	0	0	1	10894	668	24	4		4	OPRM1	6	154412361	Silent	SNP	C	TCGA-B0-5705-01A-11D-1534-10	45426969	154412361	16702706	33	12368											
SERAC1	84947	broad.mit.edu;ucsc.edu	37	6	158569914	158569914	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	158569914	G	G	158569914	3	3	196	1	0	0	0	0	1	0	0	0	14087	188	7	3	1678	3	SERAC1	6	158569914	Missense_Mutation	SNP	A	TCGA-B0-5705-01A-11D-1534-10	4157553	158569914	12545153	34	12369											
IFRD1	3475	broad.mit.edu	37	7	112090771	112090771	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	-	112090771	-	-	112090771	7	5	196	1	0	1	0	1	0	0	0	0	7560	855	30	0	30	0	IFRD1	7	112090771	Frame_Shift_Del	DEL	C	TCGA-B0-5705-01A-11D-1534-10		112090771	47047892	35	12370											
ANKRD7	56311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	117876197	117876197	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	117876197	C	T	117876197	4	4	196	1	0	0	0	0	0	1	0	0	686	827	29	2	585	2	ANKRD7	7	117876197	Nonsense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	5785426	117876197	41262466	36	12371											
GCC1	79571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127222351	127222351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	127222351	T	C	127222351	3	2	196	1	0	0	0	0	1	0	0	0	6292	1464	51	3	286	3	GCC1	7	127222351	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10	9346154	127222351	31916312	37	12372											
DPY19L4	286148	broad.mit.edu;ucsc.edu	37	8	95777480	95777480	+	Missense_Mutation	SNP	G	T	T	rs144794373	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	95777480	T	T	95777480	3	4	196	1	0	0	0	0	1	0	0	0	4745	971	34	4	974	4	DPY19L4	8	95777480	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10		95777480	50586542	38	12373	153	2									
DPY19L4	286148	broad.mit.edu;ucsc.edu	37	8	95777481	95777481	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	95777481	A	A	95777481	3	1	196	1	0	0	0	0	1	0	0	0	4745	797	28	4	975	4	DPY19L4	8	95777481	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	1	95777481	50586541	39	12374	153	2									
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113529433	113529433	+	Missense_Mutation	SNP	C	C	T	rs138068999		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	113529433	C	T	113529433	3	4	196	1	0	0	0	0	1	0	0	0	3948	536	19	1	6713	1	CSMD3	8	113529433	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	17751952	113529433	32834589	40	12375											
NOL6	65083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	33464888	33464888	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	33464888	T	G	33464888	3	3	196	1	0	0	0	0	1	0	0	0	10532	1493	52	5	696	5	NOL6	9	33464888	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10		33464888	107748543	41	12376											
CERCAM	51148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131193563	131193563	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	131193563	A	T	131193563	3	4	196	1	0	0	0	0	1	0	0	0	3268	217	8	5	1218	5	CERCAM	9	131193563	Missense_Mutation	SNP	A	TCGA-B0-5705-01A-11D-1534-10	97728675	131193563	10019868	42	12377											
OR6T1	219874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123814182	123814182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	123814182	G	T	123814182	3	4	196	1	0	0	0	0	1	0	0	0	11217	1058	37	4	610	4	OR6T1	11	123814182	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10		123814182	11192334	43	12378											
C12orf53	0	broad.mit.edu	37	12	6804739	6804739	+	Silent	SNP	C	T	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	6804739	T	T	6804739	2	4	196	1	0	0	0	0	0	0	0	1	1700	813	29	2		2	C12orf53	12	6804739	Silent	SNP	C	TCGA-B0-5705-01A-11D-1534-10		6804739	127047156	44	12379											
SLCO1C1	53919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	20893281	20893281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	20893281	C	T	20893281	3	4	196	1	0	0	0	0	1	0	0	0	14738	681	24	2	1754	2	SLCO1C1	12	20893281	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	14088542	20893281	112958614	45	12380											
SLCO1A2	6579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21471822	21471822	+	Silent	SNP	G	G	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	21471822	G	T	21471822	2	4	196	1	0	0	0	0	0	0	0	1	14735	1335	47	4		4	SLCO1A2	12	21471822	Silent	SNP	G	TCGA-B0-5705-01A-11D-1534-10	578541	21471822	112380073	46	12381											
ADCY6	112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49167327	49167327	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	-	49167327	T	-	49167327	7	5	196	1	0	1	0	1	0	0	0	0	298	1406	49	0	988	0	ADCY6	12	49167327	Frame_Shift_Del	DEL	T	TCGA-B0-5705-01A-11D-1534-10	27695505	49167327	84684568	47	12382											
CALCOCO1	57658	broad.mit.edu;ucsc.edu	37	12	54107576	54107576	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	54107576	C	C	54107576	3	2	196	1	0	0	0	0	1	0	0	0	2579	1000	35	4	387	4	CALCOCO1	12	54107576	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	4940249	54107576	79744319	48	12383											
CKAP4	10970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	106633704	106633704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	106633704	T	C	106633704	3	2	196	1	0	0	0	0	1	0	0	0	3446	1588	55	3	905	3	CKAP4	12	106633704	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10	52526128	106633704	27218191	49	12384											
MRP63	78988	broad.mit.edu	37	13	21751241	21751241	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	21751241	G	G	21751241	3	3	196	1	0	0	0	0	1	0	0	0	9780	535	19	4	188	4	MRP63	13	21751241	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10		21751241	93418637	50	12385											
RNF31	55072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24617487	24617487	+	Silent	SNP	A	A	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	24617487	A	G	24617487	2	3	196	1	0	0	0	0	0	0	0	1	13500	320	12	3		3	RNF31	14	24617487	Silent	SNP	A	TCGA-B0-5705-01A-11D-1534-10		24617487	82732053	51	12386											
ZFP106	64397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42743699	42743699	+	Silent	SNP	A	A	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	42743699	A	G	42743699	2	3	196	1	0	0	0	0	0	0	0	1	17649	98	4	3		3	ZFP106	15	42743699	Silent	SNP	A	TCGA-B0-5705-01A-11D-1534-10		42743699	59787693	52	12387											
ZSCAN29	146050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43661240	43661240	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	43661240	T	A	43661240	3	1	196	1	0	0	0	0	1	0	0	0	18248	1580	55	5	2170	5	ZSCAN29	15	43661240	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10	917541	43661240	58870152	53	12388											
TRPM7	54822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	50867287	50867287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	50867287	A	G	50867287	3	3	196	1	0	0	0	0	1	0	0	0	16603	449	16	3	840	3	TRPM7	15	50867287	Missense_Mutation	SNP	A	TCGA-B0-5705-01A-11D-1534-10	7206047	50867287	51664105	54	12389											
CLDN6	9074	broad.mit.edu;hgsc.bcm.edu	37	16	3065984	3065984	+	Silent	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	3065984	C	T	3065984	2	4	196	1	0	0	0	0	0	0	0	1	3491	813	29	2		2	CLDN6	16	3065984	Silent	SNP	C	TCGA-B0-5705-01A-11D-1534-10		3065984	87288769	55	12390											
ITGAD	3681	broad.mit.edu;ucsc.edu	37	16	31424171	31424171	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	31424171	G	G	31424171	3	3	196	1	0	0	0	0	1	0	0	0	7891	1551	54	5	1778	5	ITGAD	16	31424171	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10	28358187	31424171	58930582	56	12391											
ZNF423	23090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	49670777	49670777	+	Silent	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	49670777	C	T	49670777	2	4	196	1	0	0	0	0	0	0	0	1	17910	680	24	2		2	ZNF423	16	49670777	Silent	SNP	C	TCGA-B0-5705-01A-11D-1534-10	18246606	49670777	40683976	57	12392											
CHD9	80205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	53340243	53340243	+	Silent	SNP	T	T	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	53340243	T	C	53340243	2	2	196	1	0	0	0	0	0	0	0	1	3334	1461	51	3		3	CHD9	16	53340243	Silent	SNP	T	TCGA-B0-5705-01A-11D-1534-10	3669466	53340243	37014510	58	12393											
SLC9A5	6553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67304703	67304703	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	67304703	G	T	67304703	4	4	196	1	0	0	0	0	0	1	0	0	14730	1175	41	4	2343	4	SLC9A5	16	67304703	Nonsense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	13964460	67304703	23050050	59	12394	154	2									
SLC9A5	6553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67304704	67304704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	67304704	A	G	67304704	3	3	196	1	0	0	0	0	1	0	0	0	14730	304	11	3	2344	3	SLC9A5	16	67304704	Missense_Mutation	SNP	A	TCGA-B0-5705-01A-11D-1534-10	1	67304704	23050049	60	12395	154	2									
ADAMTS18	170692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	77325284	77325284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	77325284	C	T	77325284	3	4	196	1	0	0	0	0	1	0	0	0	263	884	31	1	396	1	ADAMTS18	16	77325284	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	10020580	77325284	13029469	61	12396											
WDR81	124997	broad.mit.edu	37	17	1636960	1636960	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	-	1636960	-	-	1636960	7	5	196	1	0	1	0	1	0	0	0	0	17342	506	18	0	4717	0	WDR81	17	1636960	Frame_Shift_Del	DEL	C	TCGA-B0-5705-01A-11D-1534-10		1636960	79558250	62	12397											
NCOR1	9611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	16021256	16021256	+	Silent	SNP	A	A	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	16021256	A	G	16021256	2	3	196	1	0	0	0	0	0	0	0	1	10242	359	13	3		3	NCOR1	17	16021256	Silent	SNP	A	TCGA-B0-5705-01A-11D-1534-10	14384296	16021256	65173954	63	12398											
STAT3	6774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40485988	40485988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	40485988	A	T	40485988	3	4	196	1	0	0	0	0	1	0	0	0	15278	420	15	5	1499	5	STAT3	17	40485988	Missense_Mutation	SNP	A	TCGA-B0-5705-01A-11D-1534-10	24464732	40485988	40709222	64	12399											
CELF4	56853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	34833813	34833813	+	Silent	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	34833813	C	T	34833813	2	4	196	1	0	0	0	0	0	0	0	1	3220	697	25	2		2	CELF4	18	34833813	Silent	SNP	C	TCGA-B0-5705-01A-11D-1534-10		34833813	43243435	65	12400											
ZNF555	148254	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2853429	2853429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	2853429	C	A	2853429	3	1	196	1	0	0	0	0	1	0	0	0	17998	711	25	4	1380	4	ZNF555	19	2853429	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10		2853429	56275554	66	12401											
ZNF625	90589	hgsc.bcm.edu	37	19	12256227	12256228	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	-	12256228	TG	-	12256227	7	5	196	1	0	1	0	1	0	0	0	0	18061	1812	63	0	118	0	ZNF625	19	12256227	Frame_Shift_Del	DEL	TG	TCGA-B0-5705-01A-11D-1534-10	9402798	12256227	46872756	67	12402											
ZNF790	388536	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37310789	37310789	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	37310789	G	C	37310789	3	2	196	1	0	0	0	0	1	0	0	0	18174	1357	47	4	1457	4	ZNF790	19	37310789	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	25054562	37310789	21818194	68	12403											
EXOSC5	56915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41895707	41895707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	41895707	C	A	41895707	3	1	196	1	0	0	0	0	1	0	0	0	5320	623	22	4	231	4	EXOSC5	19	41895707	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	4584918	41895707	17233276	69	12404											
FTL	2512	broad.mit.edu;hgsc.bcm.edu	37	19	49468840	49468840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	49468840	C	A	49468840	3	1	196	1	0	0	0	0	1	0	0	0	6091	711	25	4	78	4	FTL	19	49468840	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	7573133	49468840	9660143	70	12405											
RPS11	6205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50001200	50001200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	50001200	A	G	50001200	3	3	196	1	0	0	0	0	1	0	0	0	13634	295	11	3	264	3	RPS11	19	50001200	Missense_Mutation	SNP	A	TCGA-B0-5705-01A-11D-1534-10	532360	50001200	9127783	71	12406											
USP29	57663	hgsc.bcm.edu;ucsc.edu	37	19	57642738	57642738	+	Silent	SNP	C	C	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	57642738	C	A	57642738	2	1	196	1	0	0	0	0	0	0	0	1	17071	875	31	4		4	USP29	19	57642738	Silent	SNP	C	TCGA-B0-5705-01A-11D-1534-10	7641538	57642738	1486245	72	12407	155	3									
USP29	57663	hgsc.bcm.edu;ucsc.edu	37	19	57642739	57642739	+	Missense_Mutation	SNP	G	G	T	rs138755535	byfrequency;alternate_allele	TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	57642739	G	T	57642739	3	4	196	1	0	0	0	0	1	0	0	0	17071	1116	39	4	2698	4	USP29	19	57642739	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	1	57642739	1486244	73	12408	155	3									
USP29	57663	hgsc.bcm.edu;ucsc.edu	37	19	57642746	57642746	+	Silent	SNP	T	T	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	57642746	T	C	57642746	2	2	196	1	0	0	0	0	0	0	0	1	17071	1509	53	3		3	USP29	19	57642746	Silent	SNP	T	TCGA-B0-5705-01A-11D-1534-10	7	57642746	1486237	74	12409	155	3									
SLC27A5	10998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	59010218	59010218	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	G	59010218	C	G	59010218	3	3	196	1	0	0	0	0	1	0	0	0	14542	912	32	4	250	4	SLC27A5	19	59010218	Missense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	1367472	59010218	118765	75	12410											
PLAGL2	5326	broad.mit.edu;hgsc.bcm.edu	37	20	30784297	30784297	+	Silent	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	30784297	C	T	30784297	2	4	196	1	0	0	0	0	0	0	0	1	12027	813	29	2		2	PLAGL2	20	30784297	Silent	SNP	C	TCGA-B0-5705-01A-11D-1534-10		30784297	32241223	76	12411											
PFDN4	5203	broad.mit.edu;ucsc.edu	37	20	52835595	52835595	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	52835595	T	T	52835595	3	4	196	1	0	0	0	0	1	0	0	0	11764	942	33	4	325	4	PFDN4	20	52835595	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	22051298	52835595	10189925	77	12412											
RBM11	54033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	15599585	15599585	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	15599585	C	T	15599585	4	4	196	1	0	0	0	0	0	1	0	0	13125	644	23	1	835	1	RBM11	21	15599585	Nonsense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10		15599585	32530310	78	12413											
CXADR	1525	hgsc.bcm.edu;ucsc.edu	37	21	18931362	18931363	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	-	18931363	TG	-	18931362	7	5	196	1	0	1	0	1	0	0	0	0	4078	1464	51	0	498	0	CXADR	21	18931362	Frame_Shift_Del	DEL	TG	TCGA-B0-5705-01A-11D-1534-10	3331777	18931362	29198533	79	12414											
KRTAP22-1	337979	broad.mit.edu;ucsc.edu	37	21	31973474	31973474	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	31973474	T	T	31973474	3	4	196	1	0	0	0	0	1	0	0	0	8547	1203	42	4	37	4	KRTAP22-1	21	31973474	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	13042112	31973474	16156421	80	12415											
HSF2BP	11077	hgsc.bcm.edu;ucsc.edu	37	21	45053272	45053272	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	45053272	C	A	45053272	4	1	196	1	0	0	0	0	0	1	0	0	7404	835	29	4	702	4	HSF2BP	21	45053272	Nonsense_Mutation	SNP	C	TCGA-B0-5705-01A-11D-1534-10	13079798	45053272	3076623	81	12416											
MTMR3	8897	hgsc.bcm.edu;ucsc.edu	37	22	30415808	30415816	+	In_Frame_Del	DEL	CCCTCTCTT	CCCTCTCTT	-	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	CCCTCTCTT	CCCTCTCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	-	30415816	CCCTCTCTT	-	30415808	7	5	196	1	0	1	0	1	0	0	0	0	9952	506	18	0	2218	0	MTMR3	22	30415808	In_Frame_Del	DEL	CCCTCTCTT	TCGA-B0-5705-01A-11D-1534-10		30415808	20888758	82	12417											
CHKB	1120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	51018844	51018844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	C	51018844	T	C	51018844	3	2	196	1	0	0	0	0	1	0	0	0	3350	1797	62	3	532	3	CHKB	22	51018844	Missense_Mutation	SNP	T	TCGA-B0-5705-01A-11D-1534-10	20603036	51018844	285722	83	12418											
FIGF	2277	broad.mit.edu	37	X	15402300	15402301	+	Translation_Start_Site	INS	-	CTCATG	CTCATG	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	CTCATG	15402301	CTCATG	CTCATG	15402300	6	5	196	1	0	1	1	0	0	0	0	0	5896	1798	62	0		0	FIGF	23	15402300	Translation_Start_Site	INS	-	TCGA-B0-5705-01A-11D-1534-10		15402300	139868260	84	12419											
PRPS1	5631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	106885678	106885678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	A	106885678	G	A	106885678	3	1	196	1	0	0	0	0	1	0	0	0	12588	1000	35	2	502	2	PRPS1	23	106885678	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	91483378	106885678	48384882	85	12420											
BCORL1	63035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129147106	129147106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	129147106	G	T	129147106	3	4	196	1	0	0	0	0	1	0	0	0	1387	942	33	4	368	4	BCORL1	23	129147106	Missense_Mutation	SNP	G	TCGA-B0-5705-01A-11D-1534-10	22261428	129147106	26123454	86	12421											
GABRE	2564	hgsc.bcm.edu;ucsc.edu	37	X	151128394	151128395	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5705-01A-11D-1534-10	TCGA-B0-5705-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3095df5-5466-4b98-9f6d-f8ae8916ccca	2dd91fc7-6495-4981-97ca-d695f190215c	T	151128395	-	T	151128394	7	5	196	1	0	1	1	0	0	0	0	0	6177	333	12	0	835	0	GABRE	23	151128394	Frame_Shift_Ins	INS	-	TCGA-B0-5705-01A-11D-1534-10	21981288	151128394	4142166	87	12422											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16256538	16256538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	16256538	C	T	16256538	3	4	197	1	0	0	0	0	1	0	0	0	15050	855	30	2	3845	2	SPEN	1	16256538	Missense_Mutation	SNP	C	TCGA-B0-5706-01A-11D-1534-10		16256538	232994083	1	12423											
MAP3K6	9064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	27684801	27684801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	27684801	G	A	27684801	3	1	197	1	0	0	0	0	1	0	0	0	9261	942	33	2	1116	2	MAP3K6	1	27684801	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	11428263	27684801	221565820	2	12424											
ZYG11B	79699	hgsc.bcm.edu;ucsc.edu	37	1	53250580	53250580	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	-	53250580	T	-	53250580	7	5	197	1	0	1	0	1	0	0	0	0	18265	1464	51	0	1142	0	ZYG11B	1	53250580	Frame_Shift_Del	DEL	T	TCGA-B0-5706-01A-11D-1534-10	25565779	53250580	196000041	3	12425											
DNAJC6	9829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	65831861	65831861	+	Silent	SNP	T	T	C	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	C	65831861	T	C	65831861	2	2	197	1	0	0	0	0	0	0	0	1	4655	1567	55	3		3	DNAJC6	1	65831861	Silent	SNP	T	TCGA-B0-5706-01A-11D-1534-10	12581281	65831861	183418760	4	12426											
ST6GALNAC5	81849	broad.mit.edu;hgsc.bcm.edu	37	1	77510087	77510087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	77510087	C	T	77510087	3	4	197	1	0	0	0	0	1	0	0	0	15239	652	23	1	470	1	ST6GALNAC5	1	77510087	Missense_Mutation	SNP	C	TCGA-B0-5706-01A-11D-1534-10	11678226	77510087	171740534	5	12427											
RPF1	80135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	84945169	84945169	+	Silent	SNP	C	C	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	84945169	C	A	84945169	2	1	197	1	0	0	0	0	0	0	0	1	13559	759	27	4		4	RPF1	1	84945169	Silent	SNP	C	TCGA-B0-5706-01A-11D-1534-10	7435082	84945169	164305452	6	12428											
IGSF3	3321	broad.mit.edu	37	1	117131468	117131468	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	117131468	T	T	117131468	3	4	197	1	0	0	0	0	1	0	0	0	7608	739	26	2	1312	2	IGSF3	1	117131468	Missense_Mutation	SNP	C	TCGA-B0-5706-01A-11D-1534-10	32186299	117131468	132119153	7	12429											
NBPF10	100132406	broad.mit.edu	37	1	146420167	146420167	+	Missense_Mutation	SNP	G	A	A	rs61812001		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	146420167	A	A	146420167	3	1	197	1	0	0	0	0	1	0	0	0	10200	1392	48	2		2	NBPF10	1	146420167	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	29288699	146420167	102830454	8	12430											
FLG	2312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152282336	152282336	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	152282336	T	A	152282336	3	1	197	1	0	0	0	0	1	0	0	0	5929	1609	56	5	7163	5	FLG	1	152282336	Missense_Mutation	SNP	T	TCGA-B0-5706-01A-11D-1534-10	5862169	152282336	96968285	9	12431											
BCAN	63827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156628842	156628842	+	Silent	SNP	G	G	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	156628842	G	A	156628842	2	1	197	1	0	0	0	0	0	0	0	1	1345	991	35	2		2	BCAN	1	156628842	Silent	SNP	G	TCGA-B0-5706-01A-11D-1534-10	4346506	156628842	92621779	10	12432	156	2									
BCAN	63827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156628843	156628843	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	C	156628843	G	C	156628843	3	2	197	1	0	0	0	0	1	0	0	0	1345	1174	41	4	2777	4	BCAN	1	156628843	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	1	156628843	92621778	11	12433	156	2									
XYLB	9942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38390050	38390050	+	Missense_Mutation	SNP	G	G	T	rs146884889	alternate_allele	TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	38390050	G	T	38390050	3	4	197	1	0	0	0	0	1	0	0	0	17474	1377	48	4	73	4	XYLB	3	38390050	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10		38390050	159632380	12	12434											
PROS1	5627	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	93624946	93624946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	93624946	C	A	93624946	4	1	197	1	0	0	0	0	0	1	0	0	12568	603	21	4	1686	4	PROS1	3	93624946	Nonsense_Mutation	SNP	C	TCGA-B0-5706-01A-11D-1534-10	55234896	93624946	104397484	13	12435											
EPHA5	2044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	66467834	66467834	+	Silent	SNP	C	C	G	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	G	66467834	C	G	66467834	2	3	197	1	0	0	0	0	0	0	0	1	5172	842	30	4		4	EPHA5	4	66467834	Silent	SNP	C	TCGA-B0-5706-01A-11D-1534-10		66467834	124686442	14	12436											
UGT2B7	7364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	69972925	69972925	+	Silent	SNP	T	T	C	rs147582860	byfrequency;alternate_allele	TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	C	69972925	T	C	69972925	2	2	197	1	0	0	0	0	0	0	0	1	16974	1403	49	3		3	UGT2B7	4	69972925	Silent	SNP	T	TCGA-B0-5706-01A-11D-1534-10	3505091	69972925	121181351	15	12437											
C4orf29	80167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	128905554	128905554	+	Silent	SNP	C	C	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	128905554	C	T	128905554	2	4	197	1	0	0	0	0	0	0	0	1	2261	767	27	1		1	C4orf29	4	128905554	Silent	SNP	C	TCGA-B0-5706-01A-11D-1534-10	58932629	128905554	62248722	16	12438											
DCHS2	54798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	155219151	155219151	+	Silent	SNP	A	A	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	155219151	A	T	155219151	2	4	197	1	0	0	0	0	0	0	0	1	4290	407	15	5		5	DCHS2	4	155219151	Silent	SNP	A	TCGA-B0-5706-01A-11D-1534-10	26313597	155219151	35935125	17	12439											
RAI14	26064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	34823798	34823798	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	G	34823798	T	G	34823798	3	3	197	1	0	0	0	0	1	0	0	0	13021	1664	58	5	1970	5	RAI14	5	34823798	Missense_Mutation	SNP	T	TCGA-B0-5706-01A-11D-1534-10		34823798	146091462	18	12440											
MAST4	375449	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66459285	66459285	+	Silent	SNP	C	C	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	66459285	C	T	66459285	2	4	197	1	0	0	0	0	0	0	0	1	9334	477	17	2		2	MAST4	5	66459285	Silent	SNP	C	TCGA-B0-5706-01A-11D-1534-10	31635487	66459285	114455975	19	12441											
MEGF10	84466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	126776499	126776499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	126776499	G	A	126776499	3	1	197	1	0	0	0	0	1	0	0	0	9467	1058	37	1	2368	1	MEGF10	5	126776499	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	60317214	126776499	54138761	20	12442											
SLC36A1	206358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150843145	150843145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	150843145	G	T	150843145	3	4	197	1	0	0	0	0	1	0	0	0	14606	1000	35	4	181	4	SLC36A1	5	150843145	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	24066646	150843145	30072115	21	12443											
SYCP2L	221711	broad.mit.edu;ucsc.edu	37	6	10911079	10911079	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	10911079	T	T	10911079	3	4	197	1	0	0	0	0	1	0	0	0	15445	1319	46	4	941	4	SYCP2L	6	10911079	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10		10911079	160203988	22	12444											
BTN3A1	11119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	26413447	26413447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	26413447	G	A	26413447	3	1	197	1	0	0	0	0	1	0	0	0	1564	1291	45	2	1271	2	BTN3A1	6	26413447	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	15502368	26413447	144701620	23	12445											
CASP8AP2	9994	hgsc.bcm.edu;ucsc.edu	37	6	90573431	90573432	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	-	90573432	TG	-	90573431	7	5	197	1	0	1	0	1	0	0	0	0	2680	1464	51	0	2025	0	CASP8AP2	6	90573431	Frame_Shift_Del	DEL	TG	TCGA-B0-5706-01A-11D-1534-10	64159984	90573431	80541636	24	12446											
TMEM200A	114801	broad.mit.edu;hgsc.bcm.edu	37	6	130761752	130761752	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	C	130761752	G	C	130761752	3	2	197	1	0	0	0	0	1	0	0	0	16135	1261	44	4	187	4	TMEM200A	6	130761752	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	40188321	130761752	40353315	25	12447											
GPR126	57211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	142741085	142741085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	142741085	A	T	142741085	3	4	197	1	0	0	0	0	1	0	0	0	6647	72	3	5	3249	5	GPR126	6	142741085	Missense_Mutation	SNP	A	TCGA-B0-5706-01A-11D-1534-10	11979333	142741085	28373982	26	12448											
FAM126A	84668	hgsc.bcm.edu;ucsc.edu	37	7	23000857	23000858	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	-	23000858	CA	-	23000857	7	5	197	1	0	1	0	1	0	0	0	0	5433	709	25	0	749	0	FAM126A	7	23000857	Frame_Shift_Del	DEL	CA	TCGA-B0-5706-01A-11D-1534-10		23000857	136137806	27	12449											
ABCB8	11194	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150731895	150731895	+	Silent	SNP	C	C	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	150731895	C	T	150731895	2	4	197	1	0	0	0	0	0	0	0	1	47	668	24	2		2	ABCB8	7	150731895	Silent	SNP	C	TCGA-B0-5706-01A-11D-1534-10	127731038	150731895	8406768	28	12450											
CRISPLD1	83690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	75937789	75937789	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	C	75937789	G	C	75937789	3	2	197	1	0	0	0	0	1	0	0	0	3884	1377	48	4	1299	4	CRISPLD1	8	75937789	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10		75937789	70426233	29	12451											
ZFAND5	7763	broad.mit.edu;ucsc.edu	37	9	74971943	74971943	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	74971943	A	A	74971943	4	1	197	1	0	0	0	0	0	1	0	0	17642	1299	45	2	252	2	ZFAND5	9	74971943	Nonsense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10		74971943	66241488	30	12452											
NANS	54187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	100843297	100843297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	C	100843297	T	C	100843297	3	2	197	1	0	0	0	0	1	0	0	0	10162	1609	56	3	821	3	NANS	9	100843297	Missense_Mutation	SNP	T	TCGA-B0-5706-01A-11D-1534-10	25871354	100843297	40370134	31	12453											
ZBTB6	10773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125674096	125674096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	125674096	G	T	125674096	3	4	197	1	0	0	0	0	1	0	0	0	17564	1020	36	4	1022	4	ZBTB6	9	125674096	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	24830799	125674096	15539335	32	12454											
PMPCA	23203	broad.mit.edu	37	9	139305134	139305134	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	C	139305134	C	C	139305134	3	2	197	1	0	0	0	0	1	0	0	0	12147	1696	59	3	16	3	PMPCA	9	139305134	Missense_Mutation	SNP	T	TCGA-B0-5706-01A-11D-1534-10	13631038	139305134	1908297	33	12455											
PARD3	56288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	34626340	34626340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	G	34626340	T	G	34626340	3	3	197	1	0	0	0	0	1	0	0	0	11450	1435	50	5	1709	5	PARD3	10	34626340	Missense_Mutation	SNP	T	TCGA-B0-5706-01A-11D-1534-10		34626340	100908407	34	12456											
GRID1	2894	broad.mit.edu;hgsc.bcm.edu	37	10	87966375	87966375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	87966375	G	A	87966375	3	1	197	1	0	0	0	0	1	0	0	0	6778	1203	42	2	2819	2	GRID1	10	87966375	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	53340035	87966375	47568372	35	12457											
TUBGCP2	10844	broad.mit.edu	37	10	135106637	135106637	+	Silent	SNP	C	T	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	135106637	T	T	135106637	2	4	197	1	0	0	0	0	0	0	0	1	16778	581	21	2		2	TUBGCP2	10	135106637	Silent	SNP	C	TCGA-B0-5706-01A-11D-1534-10	47140262	135106637	428110	36	12458											
EHF	26298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	34670585	34670585	+	Silent	SNP	G	G	C	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	C	34670585	G	C	34670585	2	2	197	1	0	0	0	0	0	0	0	1	4983	1364	48	4		4	EHF	11	34670585	Silent	SNP	G	TCGA-B0-5706-01A-11D-1534-10		34670585	100335931	37	12459											
PCNXL3	399909	broad.mit.edu;ucsc.edu	37	11	65391403	65391403	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	65391403	A	A	65391403	3	1	197	1	0	0	0	0	1	0	0	0	11600	1145	40	1	2565	1	PCNXL3	11	65391403	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	30720818	65391403	69615113	38	12460											
OPCML	4978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	132527098	132527098	+	Missense_Mutation	SNP	G	G	A	rs137852691	alternate_allele	TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	132527098	G	A	132527098	3	1	197	1	0	0	0	0	1	0	0	0	10881	1348	47	2	777	2	OPCML	11	132527098	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	67135695	132527098	2479418	39	12461											
LRP6	4040	hgsc.bcm.edu;ucsc.edu	37	12	12315207	12315207	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	-	12315207	C	-	12315207	7	5	197	1	0	1	0	1	0	0	0	0	8969	564	20	0	2698	0	LRP6	12	12315207	Frame_Shift_Del	DEL	C	TCGA-B0-5706-01A-11D-1534-10		12315207	121536688	40	12462											
GXYLT1	283464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	42503369	42503369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	42503369	G	A	42503369	3	1	197	1	0	0	0	0	1	0	0	0	6910	1130	39	1	731	1	GXYLT1	12	42503369	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	30188162	42503369	91348526	41	12463											
LETMD1	25875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	51449626	51449626	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	G	51449626	T	G	51449626	3	3	197	1	0	0	0	0	1	0	0	0	8743	1841	64	5	500	5	LETMD1	12	51449626	Missense_Mutation	SNP	T	TCGA-B0-5706-01A-11D-1534-10	8946257	51449626	82402269	42	12464											
NAV3	89795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	78516003	78516003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	78516003	G	A	78516003	3	1	197	1	0	0	0	0	1	0	0	0	10192	1145	40	1	4095	1	NAV3	12	78516003	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	27066377	78516003	55335892	43	12465											
KIAA1033	23325	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	105536914	105536914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	G	105536914	A	G	105536914	3	3	197	1	0	0	0	0	1	0	0	0	8213	188	7	3	1981	3	KIAA1033	12	105536914	Missense_Mutation	SNP	A	TCGA-B0-5706-01A-11D-1534-10	27020911	105536914	28314981	44	12466											
SSH1	54434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	109182653	109182653	+	Missense_Mutation	SNP	G	G	A	rs151176410	byfrequency	TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	109182653	G	A	109182653	3	1	197	1	0	0	0	0	1	0	0	0	15196	1174	41	2	892	2	SSH1	12	109182653	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	3645739	109182653	24669242	45	12467											
MYO16	23026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	109859148	109859148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	109859148	C	A	109859148	3	1	197	1	0	0	0	0	1	0	0	0	10071	477	17	4	5675	4	MYO16	13	109859148	Missense_Mutation	SNP	C	TCGA-B0-5706-01A-11D-1534-10		109859148	5310730	46	12468											
SERPINA3	12	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	95081158	95081158	+	Missense_Mutation	SNP	A	A	G	rs145819878		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	G	95081158	A	G	95081158	3	3	197	1	0	0	0	0	1	0	0	0	14103	101	4	3	382	3	SERPINA3	14	95081158	Missense_Mutation	SNP	A	TCGA-B0-5706-01A-11D-1534-10		95081158	12268382	47	12469											
C15orf55	256646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	34640772	34640772	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	34640772	T	A	34640772	3	1	197	1	0	0	0	0	1	0	0	0	1805	1783	62	5	625	5	C15orf55	15	34640772	Missense_Mutation	SNP	T	TCGA-B0-5706-01A-11D-1534-10		34640772	67890620	48	12470											
POLG	5428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89864148	89864148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	G	89864148	C	G	89864148	3	3	197	1	0	0	0	0	1	0	0	0	12207	835	29	4	913	4	POLG	15	89864148	Missense_Mutation	SNP	C	TCGA-B0-5706-01A-11D-1534-10	55223376	89864148	12667244	49	12471											
CREBBP	1387	broad.mit.edu;ucsc.edu	37	16	3860701	3860701	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	G	3860701	G	G	3860701	3	3	197	1	0	0	0	0	1	0	0	0	3863	159	6	3	6566	3	CREBBP	16	3860701	Missense_Mutation	SNP	A	TCGA-B0-5706-01A-11D-1534-10		3860701	86494052	50	12472											
CDK12	51755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37681093	37681093	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	37681093	C	T	37681093	4	4	197	1	0	0	0	0	0	1	0	0	3130	827	29	2	3308	2	CDK12	17	37681093	Nonsense_Mutation	SNP	C	TCGA-B0-5706-01A-11D-1534-10		37681093	43514117	51	12473											
KRT13	3860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39659631	39659631	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	C	39659631	G	C	39659631	3	2	197	1	0	0	0	0	1	0	0	0	8457	962	34	4	757	4	KRT13	17	39659631	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	1978538	39659631	41535579	52	12474											
LSM12	124801	broad.mit.edu;hgsc.bcm.edu	37	17	42141197	42141197	+	Missense_Mutation	SNP	G	G	T	rs17854322	alternate_allele	TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	42141197	G	T	42141197	3	4	197	1	0	0	0	0	1	0	0	0	9060	1000	35	4	373	4	LSM12	17	42141197	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10	2481566	42141197	39054013	53	12475											
ASPSCR1	79058	broad.mit.edu;hgsc.bcm.edu	37	17	79941541	79941541	+	Silent	SNP	C	C	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	79941541	C	T	79941541	2	4	197	1	0	0	0	0	0	0	0	1	1059	477	17	2		2	ASPSCR1	17	79941541	Silent	SNP	C	TCGA-B0-5706-01A-11D-1534-10	37800344	79941541	1253669	54	12476											
ANKRD12	23253	hgsc.bcm.edu;ucsc.edu	37	18	9254423	9254423	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	-	9254423	A	-	9254423	7	5	197	1	0	1	0	1	0	0	0	0	640	233	9	0	1188	0	ANKRD12	18	9254423	Frame_Shift_Del	DEL	A	TCGA-B0-5706-01A-11D-1534-10		9254423	68822825	55	12477											
HAUS1	115106	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	43700027	43700027	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	43700027	G	A	43700027	5	1	197	1	0	0	0	0	0	0	1	0	6972	1043	36	2	491	2	HAUS1	18	43700027	Splice_Site	SNP	G	TCGA-B0-5706-01A-11D-1534-10	34445604	43700027	34377221	56	12478											
MEGF8	1954	broad.mit.edu	37	19	42860310	42860310	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	42860310	T	T	42860310	3	4	197	1	0	0	0	0	1	0	0	0	9470	1261	44	4	4361	4	MEGF8	19	42860310	Missense_Mutation	SNP	G	TCGA-B0-5706-01A-11D-1534-10		42860310	16268673	57	12479											
SHANK1	50944	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51219979	51219979	+	Silent	SNP	G	G	A	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	A	51219979	G	A	51219979	2	1	197	1	0	0	0	0	0	0	0	1	14277	1136	40	1		1	SHANK1	19	51219979	Silent	SNP	G	TCGA-B0-5706-01A-11D-1534-10	8359669	51219979	7909004	58	12480											
MYADM	91663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54377173	54377173	+	Silent	SNP	C	C	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	54377173	C	T	54377173	2	4	197	1	0	0	0	0	0	0	0	1	10013	535	19	1		1	MYADM	19	54377173	Silent	SNP	C	TCGA-B0-5706-01A-11D-1534-10	3157194	54377173	4751810	59	12481											
HCFC1	3054	broad.mit.edu;ucsc.edu	37	X	153215018	153215018	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5706-01A-11D-1534-10	TCGA-B0-5706-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60cf910-2d2e-483a-a9de-ce1e5f8d3825	78238d1e-1395-4c40-a240-416fafd642b6	T	153215018	T	T	153215018	3	4	197	1	0	0	0	0	1	0	0	0	6998	478	17	2	61	2	HCFC1	23	153215018	Missense_Mutation	SNP	C	TCGA-B0-5706-01A-11D-1534-10		153215018	2055542	60	12482											
HDAC1	3065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32782361	32782361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	32782361	G	C	32782361	3	2	198	1	0	0	0	0	1	0	0	0	7011	1020	36	4	268	4	HDAC1	1	32782361	Missense_Mutation	SNP	G	TCGA-B0-5707-01A-11D-1534-10		32782361	216468260	1	12483											
INADL	10207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62228715	62228715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	A	62228715	G	A	62228715	3	1	198	1	0	0	0	0	1	0	0	0	7738	1087	38	1	59	1	INADL	1	62228715	Missense_Mutation	SNP	G	TCGA-B0-5707-01A-11D-1534-10	29446354	62228715	187021906	2	12484											
BAT2L2	0	broad.mit.edu	37	1	171526993	171526993	+	Silent	SNP	A	C	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	171526993	C	C	171526993	2	2	198	1	0	0	0	0	0	0	0	1	1321	175	7	5		5	BAT2L2	1	171526993	Silent	SNP	A	TCGA-B0-5707-01A-11D-1534-10	109298278	171526993	77723628	3	12485											
CENPF	1063	broad.mit.edu;ucsc.edu	37	1	214830403	214830403	+	Silent	SNP	T	C	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	214830403	C	C	214830403	2	2	198	1	0	0	0	0	0	0	0	1	3233	1461	51	3		3	CENPF	1	214830403	Silent	SNP	T	TCGA-B0-5707-01A-11D-1534-10	43303410	214830403	34420218	4	12486											
RYR2	6262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	237796991	237796991	+	Silent	SNP	A	A	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	237796991	A	G	237796991	2	3	198	1	0	0	0	0	0	0	0	1	13782	11	1	3		3	RYR2	1	237796991	Silent	SNP	A	TCGA-B0-5707-01A-11D-1534-10	22966588	237796991	11453630	5	12487											
DDX18	8886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	118583851	118583851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	118583851	A	G	118583851	3	3	198	1	0	0	0	0	1	0	0	0	4347	449	16	3	1570	3	DDX18	2	118583851	Missense_Mutation	SNP	A	TCGA-B0-5707-01A-11D-1534-10		118583851	124615522	6	12488											
CDK15	65061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	202687539	202687539	+	Silent	SNP	C	C	T	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	202687539	C	T	202687539	2	4	198	1	0	0	0	0	0	0	0	1	3133	842	30	2		2	CDK15	2	202687539	Silent	SNP	C	TCGA-B0-5707-01A-11D-1534-10	84103688	202687539	40511834	7	12489											
CLDN18	51208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	137717737	137717737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	137717737	G	T	137717737	3	4	198	1	0	0	0	0	1	0	0	0	3481	1339	47	4	29	4	CLDN18	3	137717737	Missense_Mutation	SNP	G	TCGA-B0-5707-01A-11D-1534-10		137717737	60304693	8	12490											
ZBBX	79740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	167000259	167000259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	167000259	G	C	167000259	3	2	198	1	0	0	0	0	1	0	0	0	17528	1377	48	4	510	4	ZBBX	3	167000259	Missense_Mutation	SNP	G	TCGA-B0-5707-01A-11D-1534-10	29282522	167000259	31022171	9	12491											
PIGZ	80235	hgsc.bcm.edu	37	3	196674755	196674755	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	196674755	C	T	196674755	4	4	198	1	0	0	0	0	0	1	0	0	11912	595	21	2	730	2	PIGZ	3	196674755	Nonsense_Mutation	SNP	C	TCGA-B0-5707-01A-11D-1534-10	29674496	196674755	1347675	10	12492											
LRBA	987	broad.mit.edu	37	4	151604748	151604748	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	151604748	C	C	151604748	3	2	198	1	0	0	0	0	1	0	0	0	8938	1725	60	3	2803	3	LRBA	4	151604748	Missense_Mutation	SNP	T	TCGA-B0-5707-01A-11D-1534-10		151604748	39549528	11	12493											
DHX29	54505	broad.mit.edu;ucsc.edu	37	5	54579287	54579287	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	54579287	C	C	54579287	3	2	198	1	0	0	0	0	1	0	0	0	4505	1812	63	3	2468	3	DHX29	5	54579287	Missense_Mutation	SNP	T	TCGA-B0-5707-01A-11D-1534-10		54579287	126335973	12	12494											
PAM	5066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	102326008	102326008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	A	102326008	G	A	102326008	3	1	198	1	0	0	0	0	1	0	0	0	11419	1349	47	2	1574	2	PAM	5	102326008	Missense_Mutation	SNP	G	TCGA-B0-5707-01A-11D-1534-10	47746721	102326008	78589252	13	12495											
WDR36	134430	broad.mit.edu	37	5	110428209	110428209	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	110428209	T	T	110428209	3	4	198	1	0	0	0	0	1	0	0	0	17302	1203	42	4	225	4	WDR36	5	110428209	Missense_Mutation	SNP	G	TCGA-B0-5707-01A-11D-1534-10	8102201	110428209	70487051	14	12496											
DSP	1832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7583844	7583844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	7583844	G	T	7583844	3	4	198	1	0	0	0	0	1	0	0	0	4783	1290	45	4	6443	4	DSP	6	7583844	Missense_Mutation	SNP	G	TCGA-B0-5707-01A-11D-1534-10		7583844	163531223	15	12497											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56394387	56394387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	A	56394387	C	A	56394387	3	1	198	1	0	0	0	0	1	0	0	0	4785	680	24	4	6082	4	DST	6	56394387	Missense_Mutation	SNP	C	TCGA-B0-5707-01A-11D-1534-10	48810543	56394387	114720680	16	12498	157	2									
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56394388	56394388	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	A	56394388	T	A	56394388	3	1	198	1	0	0	0	0	1	0	0	0	4785	1580	55	5	6083	5	DST	6	56394388	Missense_Mutation	SNP	T	TCGA-B0-5707-01A-11D-1534-10	1	56394388	114720679	17	12499	157	2									
COL19A1	1310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	70916883	70916883	+	Missense_Mutation	SNP	G	G	T	rs141812196	byfrequency;alternate_allele	TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	70916883	G	T	70916883	3	4	198	1	0	0	0	0	1	0	0	0	3678	1000	35	4	3532	4	COL19A1	6	70916883	Missense_Mutation	SNP	G	TCGA-B0-5707-01A-11D-1534-10	14522495	70916883	100198184	18	12500											
PDE7B	27115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	136500189	136500189	+	Silent	SNP	G	G	A	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	A	136500189	G	A	136500189	2	1	198	1	0	0	0	0	0	0	0	1	11659	1194	42	2		2	PDE7B	6	136500189	Silent	SNP	G	TCGA-B0-5707-01A-11D-1534-10	65583306	136500189	34614878	19	12501											
TNRC18	84629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	5396761	5396761	+	Silent	SNP	C	C	A	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	A	5396761	C	A	5396761	2	1	198	1	0	0	0	0	0	0	0	1	16351	610	22	4		4	TNRC18	7	5396761	Silent	SNP	C	TCGA-B0-5707-01A-11D-1534-10		5396761	153741902	20	12502											
MET	4233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	116422132	116422132	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	116422132	T	G	116422132	3	3	198	1	0	0	0	0	1	0	0	0	9492	1606	56	5	3733	5	MET	7	116422132	Missense_Mutation	SNP	T	TCGA-B0-5707-01A-11D-1534-10	111025371	116422132	42716531	21	12503											
C8orf31	286122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144124475	144124475	+	Silent	SNP	C	C	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	144124475	C	G	144124475	2	3	198	1	0	0	0	0	0	0	0	1	2422	581	21	4		4	C8orf31	8	144124475	Silent	SNP	C	TCGA-B0-5707-01A-11D-1534-10		144124475	2239547	22	12504											
ZNF7	7553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	146067912	146067912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	146067912	T	C	146067912	3	2	198	1	0	0	0	0	1	0	0	0	18114	1696	59	3	1434	3	ZNF7	8	146067912	Missense_Mutation	SNP	T	TCGA-B0-5707-01A-11D-1534-10	1943437	146067912	296110	23	12505											
FIBCD1	84929	broad.mit.edu	37	9	133799697	133799697	+	Silent	SNP	C	T	T	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	133799697	T	T	133799697	2	4	198	1	0	0	0	0	0	0	0	1	5891	581	21	2		2	FIBCD1	9	133799697	Silent	SNP	C	TCGA-B0-5707-01A-11D-1534-10		133799697	7413734	24	12506											
TUBB2C	0	broad.mit.edu	37	9	140137360	140137360	+	Silent	SNP	T	C	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	140137360	C	C	140137360	2	2	198	1	0	0	0	0	0	0	0	1	16768	1567	55	3		3	TUBB2C	9	140137360	Silent	SNP	T	TCGA-B0-5707-01A-11D-1534-10	6337663	140137360	1076071	25	12507											
RELT	84957	broad.mit.edu;ucsc.edu	37	11	73105299	73105299	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	73105299	G	G	73105299	3	3	198	1	0	0	0	0	1	0	0	0	13234	304	11	3	751	3	RELT	11	73105299	Missense_Mutation	SNP	A	TCGA-B0-5707-01A-11D-1534-10		73105299	61901217	26	12508											
SLC37A4	2542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118899051	118899051	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	118899051	C	G	118899051	3	3	198	1	0	0	0	0	1	0	0	0	14613	740	26	4	1154	4	SLC37A4	11	118899051	Missense_Mutation	SNP	C	TCGA-B0-5707-01A-11D-1534-10	45793752	118899051	16107465	27	12509											
ST14	6768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	130058115	130058115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	130058115	T	C	130058115	3	2	198	1	0	0	0	0	1	0	0	0	15223	1435	50	3	194	3	ST14	11	130058115	Missense_Mutation	SNP	T	TCGA-B0-5707-01A-11D-1534-10	11159064	130058115	4948401	28	12510											
HOXC6	3223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54422514	54422514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	54422514	A	G	54422514	3	3	198	1	0	0	0	0	1	0	0	0	7322	449	16	3	211	3	HOXC6	12	54422514	Missense_Mutation	SNP	A	TCGA-B0-5707-01A-11D-1534-10		54422514	79429381	29	12511											
KL	9365	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33635592	33635592	+	Silent	SNP	T	T	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	33635592	T	C	33635592	2	2	198	1	0	0	0	0	0	0	0	1	8338	1461	51	3		3	KL	13	33635592	Silent	SNP	T	TCGA-B0-5707-01A-11D-1534-10		33635592	81534286	30	12512											
DIAPH3	81624	hgsc.bcm.edu	37	13	60385029	60385030	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	60385030	-	T	60385029	7	5	198	1	0	1	1	0	0	0	0	0	4522	913	32	0	561	0	DIAPH3	13	60385029	Frame_Shift_Ins	INS	-	TCGA-B0-5707-01A-11D-1534-10	26749437	60385029	54784849	31	12513											
SPATA5L1	79029	broad.mit.edu	37	15	45695555	45695555	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	-	45695555	-	-	45695555	7	5	198	1	0	1	0	1	0	0	0	0	15024	855	30	0	930	0	SPATA5L1	15	45695555	Frame_Shift_Del	DEL	C	TCGA-B0-5707-01A-11D-1534-10		45695555	56835837	32	12514											
CLPX	10845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65449219	65449219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	65449219	T	C	65449219	3	2	198	1	0	0	0	0	1	0	0	0	3558	1464	51	3	816	3	CLPX	15	65449219	Missense_Mutation	SNP	T	TCGA-B0-5707-01A-11D-1534-10	19753664	65449219	37082173	33	12515											
DENND4A	10260	broad.mit.edu;ucsc.edu	37	15	65957694	65957694	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	65957694	T	T	65957694	4	4	198	1	0	0	0	0	0	1	0	0	4435	595	21	2	391	2	DENND4A	15	65957694	Nonsense_Mutation	SNP	C	TCGA-B0-5707-01A-11D-1534-10	508475	65957694	36573698	34	12516											
CT62	196993	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	71403498	71403498	+	Silent	SNP	T	T	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	71403498	T	G	71403498	2	3	198	1	0	0	0	0	0	0	0	1	3992	1550	54	5		5	CT62	15	71403498	Silent	SNP	T	TCGA-B0-5707-01A-11D-1534-10	5445804	71403498	31127894	35	12517											
GNA13	10672	hgsc.bcm.edu;ucsc.edu	37	17	63052574	63052574	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	63052574	C	G	63052574	3	3	198	1	0	0	0	0	1	0	0	0	6508	796	28	4	1011	4	GNA13	17	63052574	Missense_Mutation	SNP	C	TCGA-B0-5707-01A-11D-1534-10		63052574	18142636	36	12518											
ALPK2	115701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	56246350	56246350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	56246350	A	G	56246350	3	3	198	1	0	0	0	0	1	0	0	0	545	188	7	3	4894	3	ALPK2	18	56246350	Missense_Mutation	SNP	A	TCGA-B0-5707-01A-11D-1534-10		56246350	21830898	37	12519											
SERPINB4	6318	hgsc.bcm.edu;ucsc.edu	37	18	61305037	61305038	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	AA	61305038	-	AA	61305037	7	5	198	1	0	1	1	0	0	0	0	0	14116	933	33	0	87	0	SERPINB4	18	61305037	Frame_Shift_Ins	INS	-	TCGA-B0-5707-01A-11D-1534-10	5058687	61305037	16772211	38	12520											
ZNF700	90592	broad.mit.edu;hgsc.bcm.edu	37	19	12060408	12060408	+	Silent	SNP	T	T	C	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	C	12060408	T	C	12060408	2	2	198	1	0	0	0	0	0	0	0	1	18116	1780	62	3		3	ZNF700	19	12060408	Silent	SNP	T	TCGA-B0-5707-01A-11D-1534-10		12060408	47068575	39	12521											
KIAA0355	9710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	34832722	34832722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	34832722	A	G	34832722	3	3	198	1	0	0	0	0	1	0	0	0	8177	217	8	3	1917	3	KIAA0355	19	34832722	Missense_Mutation	SNP	A	TCGA-B0-5707-01A-11D-1534-10	22772314	34832722	24296261	40	12522											
PTPRH	5794	broad.mit.edu;hgsc.bcm.edu	37	19	55713578	55713578	+	Silent	SNP	C	C	T	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	T	55713578	C	T	55713578	2	4	198	1	0	0	0	0	0	0	0	1	12816	564	20	2		2	PTPRH	19	55713578	Silent	SNP	C	TCGA-B0-5707-01A-11D-1534-10	20880856	55713578	3415405	41	12523											
CABIN1	23523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24437602	24437602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	A	24437602	G	A	24437602	3	1	198	1	0	0	0	0	1	0	0	0	2530	1290	45	2	240	2	CABIN1	22	24437602	Missense_Mutation	SNP	G	TCGA-B0-5707-01A-11D-1534-10		24437602	26866964	42	12524											
NOL12	79159	broad.mit.edu;ucsc.edu	37	22	38084989	38084989	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	G	38084989	G	G	38084989	3	3	198	1	0	0	0	0	1	0	0	0	10529	507	18	4	385	4	NOL12	22	38084989	Missense_Mutation	SNP	C	TCGA-B0-5707-01A-11D-1534-10	13647387	38084989	13219577	43	12525											
ZBTB33	10009	hgsc.bcm.edu	37	X	119387854	119387854	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	A	119387854	T	A	119387854	3	1	198	1	0	0	0	0	1	0	0	0	17548	1667	58	5	586	5	ZBTB33	23	119387854	Missense_Mutation	SNP	T	TCGA-B0-5707-01A-11D-1534-10		119387854	35882706	44	12526											
BCORL1	63035	broad.mit.edu	37	X	129150165	129150165	+	Silent	SNP	G	A	A	novel		TCGA-B0-5707-01A-11D-1534-10	TCGA-B0-5707-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eb2f9f38-bce2-4746-a3c8-40abc3379b32	d88a725d-9967-4fc7-94a6-44cccccdde24	A	129150165	A	A	129150165	2	1	198	1	0	0	0	0	0	0	0	1	1387	1335	47	2		2	BCORL1	23	129150165	Silent	SNP	G	TCGA-B0-5707-01A-11D-1534-10	9762311	129150165	26120395	45	12527											
HOOK1	51361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	60325915	60325915	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	60325915	G	C	60325915	3	2	199	1	0	0	0	0	1	0	0	0	7289	1000	35	4	1505	4	HOOK1	1	60325915	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10		60325915	188924706	1	12528											
UBE2Q1	55585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154527220	154527220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	154527220	C	A	154527220	3	1	199	1	0	0	0	0	1	0	0	0	16881	912	32	4	729	4	UBE2Q1	1	154527220	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	94201305	154527220	94723401	2	12529											
ARHGEF11	9826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156909401	156909401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	156909401	C	A	156909401	3	1	199	1	0	0	0	0	1	0	0	0	896	854	30	4	673	4	ARHGEF11	1	156909401	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	2382181	156909401	92341220	3	12530											
POU2F1	5451	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	167365627	167365627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	167365627	G	T	167365627	3	4	199	1	0	0	0	0	1	0	0	0	12278	1020	36	4	1057	4	POU2F1	1	167365627	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	10456226	167365627	81884994	4	12531											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201041938	201041938	+	Silent	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	201041938	C	T	201041938	2	4	199	1	0	0	0	0	0	0	0	1	2549	564	20	2		2	CACNA1S	1	201041938	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	33676311	201041938	48208683	5	12532											
GMCL1	64395	broad.mit.edu	37	2	70057234	70057234	+	Silent	SNP	G	A	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	70057234	A	A	70057234	2	1	199	1	0	0	0	0	0	0	0	1	6492	991	35	2		2	GMCL1	2	70057234	Silent	SNP	G	TCGA-B0-5709-01A-11D-1534-10		70057234	173142139	6	12533											
C2orf3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	75907426	75907426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	75907426	G	T	75907426	3	4	199	1	0	0	0	0	1	0	0	0	2164	1000	35	4	664	4	C2orf3	2	75907426	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	5850192	75907426	167291947	7	12534											
TTC21B	79809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	166731270	166731270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	166731270	G	T	166731270	3	4	199	1	0	0	0	0	1	0	0	0	16700	1261	44	4	8	4	TTC21B	2	166731270	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	90823844	166731270	76468103	8	12535											
WDR75	84128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	190324065	190324065	+	Silent	SNP	G	G	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	190324065	G	A	190324065	2	1	199	1	0	0	0	0	0	0	0	1	17337	1165	41	2		2	WDR75	2	190324065	Silent	SNP	G	TCGA-B0-5709-01A-11D-1534-10	23592795	190324065	52875308	9	12536											
SAG	6295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234235795	234235795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	234235795	C	T	234235795	3	4	199	1	0	0	0	0	1	0	0	0	13821	710	25	2	486	2	SAG	2	234235795	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	43911730	234235795	8963578	10	12537											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188268	10188268	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	-	10188268	G	-	10188268	7	5	199	1	0	1	0	1	0	0	0	0	17174	1306	46	0	417	0	VHL	3	10188268	Frame_Shift_Del	DEL	G	TCGA-B0-5709-01A-11D-1534-10		10188268	187834162	11	12538											
TSEN2	80746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	12545142	12545142	+	Silent	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	12545142	C	T	12545142	2	4	199	1	0	0	0	0	0	0	0	1	16624	842	30	2		2	TSEN2	3	12545142	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	2356874	12545142	185477288	12	12539											
BSN	8927	broad.mit.edu;hgsc.bcm.edu	37	3	49662433	49662433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	49662433	G	A	49662433	3	1	199	1	0	0	0	0	1	0	0	0	1532	1175	41	2	256	2	BSN	3	49662433	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	37117291	49662433	148359997	13	12540											
EBLN2	55096	hgsc.bcm.edu	37	3	73111481	73111481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	73111481	C	A	73111481	3	1	199	1	0	0	0	0	1	0	0	0	4886	477	17	4	251	4	EBLN2	3	73111481	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	23449048	73111481	124910949	14	12541											
C3orf33	285315	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	155493591	155493591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	155493591	C	A	155493591	3	1	199	1	0	0	0	0	1	0	0	0	2225	913	32	4	675	4	C3orf33	3	155493591	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	82382110	155493591	42528839	15	12542											
MUC4	4585	hgsc.bcm.edu	37	3	195508442	195508537	+	In_Frame_Del	DEL	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	-	195508537	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	195508442	7	5	199	1	0	1	0	1	0	0	0	0	9985	797	28	0		0	MUC4	3	195508442	In_Frame_Del	DEL	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	TCGA-B0-5709-01A-11D-1534-10	40014851	195508442	2513988	16	12543											
SLC26A1	10861	broad.mit.edu	37	4	983003	983003	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	-	983003	-	-	983003	7	5	199	1	0	1	0	1	0	0	0	0	14527	1551	54	0	488	0	SLC26A1	4	983003	Frame_Shift_Del	DEL	T	TCGA-B0-5709-01A-11D-1534-10		983003	190171273	17	12544											
FAM105B	90268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	14693052	14693052	+	Silent	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	14693052	C	T	14693052	2	4	199	1	0	0	0	0	0	0	0	1	5392	900	32	2		2	FAM105B	5	14693052	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10		14693052	166222208	18	12545											
GPR98	84059	broad.mit.edu;ucsc.edu	37	5	90281200	90281200	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	90281200	A	A	90281200	3	1	199	1	0	0	0	0	1	0	0	0	6728	710	25	4	18351	4	GPR98	5	90281200	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	75588148	90281200	90634060	19	12546											
ZKSCAN3	80317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28329175	28329175	+	Silent	SNP	A	A	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	28329175	A	G	28329175	2	3	199	1	0	0	0	0	0	0	0	1	17700	11	1	3		3	ZKSCAN3	6	28329175	Silent	SNP	A	TCGA-B0-5709-01A-11D-1534-10		28329175	142785892	20	12547											
OR2B3	442184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	29054173	29054173	+	Silent	SNP	A	A	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	29054173	A	G	29054173	2	3	199	1	0	0	0	0	0	0	0	1	10997	40	2	3		3	OR2B3	6	29054173	Silent	SNP	A	TCGA-B0-5709-01A-11D-1534-10	724998	29054173	142060894	21	12548											
COL19A1	1310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	70878567	70878567	+	Silent	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	70878567	C	T	70878567	2	4	199	1	0	0	0	0	0	0	0	1	3678	726	26	2		2	COL19A1	6	70878567	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	41824394	70878567	100236500	22	12549											
STXBP5	134957	broad.mit.edu	37	6	147588238	147588238	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	147588238	C	C	147588238	3	2	199	1	0	0	0	0	1	0	0	0	15368	1435	50	3	675	3	STXBP5	6	147588238	Missense_Mutation	SNP	T	TCGA-B0-5709-01A-11D-1534-10	76709671	147588238	23526829	23	12550											
IGF2R	3482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160509177	160509177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	160509177	G	T	160509177	3	4	199	1	0	0	0	0	1	0	0	0	7583	933	33	4	6484	4	IGF2R	6	160509177	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	12920939	160509177	10605890	24	12551											
SEMA3E	9723	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82997339	82997339	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	82997339	T	A	82997339	4	1	199	1	0	0	0	0	0	1	0	0	14041	1588	55	5	440	5	SEMA3E	7	82997339	Nonsense_Mutation	SNP	T	TCGA-B0-5709-01A-11D-1534-10		82997339	76141324	25	12552											
PPP1R9A	55607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94540664	94540664	+	Silent	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	94540664	C	T	94540664	2	4	199	1	0	0	0	0	0	0	0	1	12388	564	20	2		2	PPP1R9A	7	94540664	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	11543325	94540664	64597999	26	12553											
SLC26A4	5172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107334908	107334908	+	Silent	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	107334908	C	T	107334908	2	4	199	1	0	0	0	0	0	0	0	1	14532	912	32	2		2	SLC26A4	7	107334908	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	12794244	107334908	51803755	27	12554											
WASL	8976	broad.mit.edu	37	7	123332841	123332841	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	123332841	C	C	123332841	3	2	199	1	0	0	0	0	1	0	0	0	17268	1174	41	4	622	4	WASL	7	123332841	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	15997933	123332841	35805822	28	12555											
CSMD1	64478	broad.mit.edu	37	8	3245041	3245041	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	3245041	T	T	3245041	4	4	199	1	0	0	0	0	0	1	0	0	3946	856	30	2	8149	2	CSMD1	8	3245041	Nonsense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10		3245041	143118981	29	12556											
KLF10	7071	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	103664082	103664082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	103664082	C	A	103664082	3	1	199	1	0	0	0	0	1	0	0	0	8345	797	28	4	972	4	KLF10	8	103664082	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	100419041	103664082	42699940	30	12557											
TJP2	9414	hgsc.bcm.edu;ucsc.edu	37	9	71842779	71842780	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	71842780	-	A	71842779	7	5	199	1	0	1	1	0	0	0	0	0	15942	1175	41	0	1496	0	TJP2	9	71842779	Frame_Shift_Ins	INS	-	TCGA-B0-5709-01A-11D-1534-10		71842779	69370652	31	12558											
PSMB7	5695	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	127177673	127177673	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	127177673	A	T	127177673	3	4	199	1	0	0	0	0	1	0	0	0	12692	43	2	5	833	5	PSMB7	9	127177673	Missense_Mutation	SNP	A	TCGA-B0-5709-01A-11D-1534-10	55334894	127177673	14035758	32	12559											
GBF1	8729	hgsc.bcm.edu;ucsc.edu	37	10	104118423	104118423	+	Silent	SNP	G	G	T	rs142955445	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	104118423	G	T	104118423	2	4	199	1	0	0	0	0	0	0	0	1	6278	1248	44	4		4	GBF1	10	104118423	Silent	SNP	G	TCGA-B0-5709-01A-11D-1534-10		104118423	31416324	33	12560											
JAKMIP3	282973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	133961488	133961488	+	Silent	SNP	C	C	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	133961488	C	G	133961488	2	3	199	1	0	0	0	0	0	0	0	1	7949	813	29	4		4	JAKMIP3	10	133961488	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	29843065	133961488	1573259	34	12561											
KBTBD4	55709	broad.mit.edu;hgsc.bcm.edu	37	11	47599123	47599123	+	Silent	SNP	T	T	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	47599123	T	C	47599123	2	2	199	1	0	0	0	0	0	0	0	1	8002	1606	56	3		3	KBTBD4	11	47599123	Silent	SNP	T	TCGA-B0-5709-01A-11D-1534-10		47599123	87407393	35	12562											
MS4A14	84689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60183100	60183100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	60183100	A	C	60183100	3	2	199	1	0	0	0	0	1	0	0	0	9865	130	5	5	677	5	MS4A14	11	60183100	Missense_Mutation	SNP	A	TCGA-B0-5709-01A-11D-1534-10	12583977	60183100	74823416	36	12563											
STT3A	3703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	125479362	125479362	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	125479362	C	A	125479362	4	1	199	1	0	0	0	0	0	1	0	0	15345	893	31	4	1029	4	STT3A	11	125479362	Nonsense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	65296262	125479362	9527154	37	12564											
CD27	939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6554632	6554632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	6554632	C	A	6554632	3	1	199	1	0	0	0	0	1	0	0	0	2992	797	28	4	185	4	CD27	12	6554632	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10		6554632	127297263	38	12565											
SOX5	6660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	23998950	23998950	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	23998950	T	A	23998950	4	1	199	1	0	0	0	0	0	1	0	0	14967	1792	62	5	1905	5	SOX5	12	23998950	Nonsense_Mutation	SNP	T	TCGA-B0-5709-01A-11D-1534-10	17444318	23998950	109852945	39	12566											
KRT5	3852	broad.mit.edu;hgsc.bcm.edu	37	12	52910988	52910988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	52910988	C	T	52910988	3	4	199	1	0	0	0	0	1	0	0	0	8486	652	23	1	667	1	KRT5	12	52910988	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	28912038	52910988	80940907	40	12567											
ACADS	35	broad.mit.edu;ucsc.edu	37	12	121176678	121176678	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	121176678	A	A	121176678	3	1	199	1	0	0	0	0	1	0	0	0	114	1087	38	1	1019	1	ACADS	12	121176678	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	68265690	121176678	12675217	41	12568											
SACS	26278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	23907922	23907922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	23907922	G	C	23907922	3	2	199	1	0	0	0	0	1	0	0	0	13817	933	33	4	3650	4	SACS	13	23907922	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10		23907922	91261956	42	12569											
MYCBP2	23077	broad.mit.edu;ucsc.edu	37	13	77629761	77629761	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	77629761	G	G	77629761	3	3	199	1	0	0	0	0	1	0	0	0	10025	43	2	3	473	3	MYCBP2	13	77629761	Missense_Mutation	SNP	A	TCGA-B0-5709-01A-11D-1534-10	53721839	77629761	37540117	43	12570											
SPRED1	161742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	38591742	38591742	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	38591742	C	G	38591742	3	3	199	1	0	0	0	0	1	0	0	0	15104	477	17	4	207	4	SPRED1	15	38591742	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10		38591742	63939650	44	12571											
DMXL2	23312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51778458	51778458	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	51778458	G	T	51778458	4	4	199	1	0	0	0	0	0	1	0	0	4597	1294	45	4	3903	4	DMXL2	15	51778458	Nonsense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	13186716	51778458	50752934	45	12572	158	2									
DMXL2	23312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51778460	51778460	+	Silent	SNP	A	A	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	51778460	A	G	51778460	2	3	199	1	0	0	0	0	0	0	0	1	4597	59	3	3		3	DMXL2	15	51778460	Silent	SNP	A	TCGA-B0-5709-01A-11D-1534-10	2	51778460	50752932	46	12573	158	2									
TCF12	6938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	57489997	57489997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	57489997	A	G	57489997	3	3	199	1	0	0	0	0	1	0	0	0	15699	15	1	3	579	3	TCF12	15	57489997	Missense_Mutation	SNP	A	TCGA-B0-5709-01A-11D-1534-10	5711537	57489997	45041395	47	12574	159	2									
TCF12	6938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	57489998	57489998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	57489998	A	G	57489998	3	3	199	1	0	0	0	0	1	0	0	0	15699	72	3	3	580	3	TCF12	15	57489998	Missense_Mutation	SNP	A	TCGA-B0-5709-01A-11D-1534-10	1	57489998	45041394	48	12575	159	2									
FEM1B	10116	broad.mit.edu;ucsc.edu	37	15	68582835	68582835	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	68582835	T	T	68582835	3	4	199	1	0	0	0	0	1	0	0	0	5817	43	2	5	1145	5	FEM1B	15	68582835	Missense_Mutation	SNP	A	TCGA-B0-5709-01A-11D-1534-10	11092837	68582835	33948557	49	12576											
LOC81691	81691	broad.mit.edu;ucsc.edu	37	16	20824600	20824600	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	20824600	A	A	20824600	3	1	199	1	0	0	0	0	1	0	0	0	8897	1203	42	2	233	2	LOC81691	16	20824600	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10		20824600	69530153	50	12577											
ITGAX	3687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31388553	31388553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	31388553	C	T	31388553	3	4	199	1	0	0	0	0	1	0	0	0	7896	652	23	1	2846	1	ITGAX	16	31388553	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	10563953	31388553	58966200	51	12578											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11648186	11648186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	11648186	C	T	11648186	3	4	199	1	0	0	0	0	1	0	0	0	4610	623	22	2	6306	2	DNAH9	17	11648186	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10		11648186	69547024	52	12579											
NOS2	4843	broad.mit.edu	37	17	26091141	26091141	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	26091141	C	C	26091141	3	2	199	1	0	0	0	0	1	0	0	0	10550	1203	42	4	1031	4	NOS2	17	26091141	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	14442955	26091141	55104069	53	12580											
HOXB13	10481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	46805408	46805408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	46805408	C	A	46805408	3	1	199	1	0	0	0	0	1	0	0	0	7307	478	17	4	314	4	HOXB13	17	46805408	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	20714267	46805408	34389802	54	12581											
CACNG5	27091	hgsc.bcm.edu;ucsc.edu	37	17	64873504	64873505	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	TG	64873505	-	TG	64873504	7	5	199	1	0	1	1	0	0	0	0	0	2562	900	32	0	56	0	CACNG5	17	64873504	Frame_Shift_Ins	INS	-	TCGA-B0-5709-01A-11D-1534-10	18068096	64873504	16321706	55	12582											
MYOM1	8736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	3135721	3135721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	3135721	G	A	3135721	3	1	199	1	0	0	0	0	1	0	0	0	10098	1319	46	2	3120	2	MYOM1	18	3135721	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10		3135721	74941527	56	12583											
DMKN	93099	broad.mit.edu	37	19	35991482	35991482	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	35991482	T	T	35991482	3	4	199	1	0	0	0	0	1	0	0	0	4584	637	22	2	252	2	DMKN	19	35991482	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10		35991482	23137501	57	12584											
STRN4	29888	broad.mit.edu;ucsc.edu	37	19	47228597	47228597	+	Silent	SNP	C	G	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	47228597	G	G	47228597	2	3	199	1	0	0	0	0	0	0	0	1	15343	610	22	4		4	STRN4	19	47228597	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	11237115	47228597	11900386	58	12585											
ZNF765	91661	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53910951	53910951	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	53910951	A	T	53910951	3	4	199	1	0	0	0	0	1	0	0	0	18151	347	12	5	153	5	ZNF765	19	53910951	Missense_Mutation	SNP	A	TCGA-B0-5709-01A-11D-1534-10	6682354	53910951	5218032	59	12586											
RIN2	54453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	19977395	19977395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	19977395	G	A	19977395	3	1	199	1	0	0	0	0	1	0	0	0	13385	1058	37	1	2311	1	RIN2	20	19977395	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10		19977395	43048125	60	12587											
DHX35	60625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	37650496	37650496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	37650496	G	T	37650496	3	4	199	1	0	0	0	0	1	0	0	0	4510	1377	48	4	1573	4	DHX35	20	37650496	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	17673101	37650496	25375024	61	12588											
ITSN1	6453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	35144369	35144369	+	Silent	SNP	G	G	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	35144369	G	C	35144369	2	2	199	1	0	0	0	0	0	0	0	1	7933	1132	40	4		4	ITSN1	21	35144369	Silent	SNP	G	TCGA-B0-5709-01A-11D-1534-10		35144369	12985526	62	12589											
ACE2	59272	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	15591566	15591566	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	15591566	C	A	15591566	4	1	199	1	0	0	0	0	0	1	0	0	137	864	30	4	984	4	ACE2	23	15591566	Nonsense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10		15591566	139678994	63	12590											
DDX3X	1654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	41202084	41202084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	41202084	G	C	41202084	3	2	199	1	0	0	0	0	1	0	0	0	4360	1291	45	4	560	4	DDX3X	23	41202084	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	25610518	41202084	114068476	64	12591											
DACH2	117154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	85906058	85906058	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	C	85906058	G	C	85906058	3	2	199	1	0	0	0	0	1	0	0	0	4223	1348	47	4	674	4	DACH2	23	85906058	Missense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	44703974	85906058	69364502	65	12592											
IL1RAPL2	26280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	104961379	104961379	+	Silent	SNP	C	C	G	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	G	104961379	C	G	104961379	2	3	199	1	0	0	0	0	0	0	0	1	7669	668	24	4		4	IL1RAPL2	23	104961379	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	19055321	104961379	50309181	66	12593											
COL4A5	1287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107938641	107938641	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	107938641	G	A	107938641	4	1	199	1	0	0	0	0	0	1	0	0	3696	1203	42	2	5157	2	COL4A5	23	107938641	Nonsense_Mutation	SNP	G	TCGA-B0-5709-01A-11D-1534-10	2977262	107938641	47331919	67	12594											
STAG2	10735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	123197875	123197875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	123197875	C	T	123197875	3	4	199	1	0	0	0	0	1	0	0	0	15255	643	23	1	2069	1	STAG2	23	123197875	Missense_Mutation	SNP	C	TCGA-B0-5709-01A-11D-1534-10	15259234	123197875	32072685	68	12595											
TFDP3	51270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	132351937	132351937	+	Silent	SNP	C	C	T	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	T	132351937	C	T	132351937	2	4	199	1	0	0	0	0	0	0	0	1	15811	680	24	2		2	TFDP3	23	132351937	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	9154062	132351937	22918623	69	12596											
MAMLD1	10046	broad.mit.edu	37	X	149639327	149639327	+	Silent	SNP	G	A	A	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	149639327	A	A	149639327	2	1	199	1	0	0	0	0	0	0	0	1	9215	962	34	2		2	MAMLD1	23	149639327	Silent	SNP	G	TCGA-B0-5709-01A-11D-1534-10	17287390	149639327	5631233	70	12597											
CSAG1	158511	hgsc.bcm.edu;ucsc.edu	37	X	151908814	151908814	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	-	151908814	G	-	151908814	7	5	199	1	0	1	0	1	0	0	0	0	3928	1116	39	0	59	0	CSAG1	23	151908814	Frame_Shift_Del	DEL	G	TCGA-B0-5709-01A-11D-1534-10	2269487	151908814	3361746	71	12598											
MPP1	4354	broad.mit.edu;ucsc.edu	37	X	154010064	154010064	+	Silent	SNP	C	A	A	rs147268060	alternate_allele	TCGA-B0-5709-01A-11D-1534-10	TCGA-B0-5709-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bfeaecbe-7148-4642-b69a-b908a248f328	3eddc24f-dc63-45e6-b4db-f40af3af4d35	A	154010064	A	A	154010064	2	1	199	1	0	0	0	0	0	0	0	1	9740	755	27	4		4	MPP1	23	154010064	Silent	SNP	C	TCGA-B0-5709-01A-11D-1534-10	2101250	154010064	1260496	72	12599											
RPS6KA1	6195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26897964	26897964	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	26897964	A	T	26897964	3	4	200	1	0	0	0	0	1	0	0	0	13663	188	7	5	1824	5	RPS6KA1	1	26897964	Missense_Mutation	SNP	A	TCGA-B0-5710-01A-11D-1669-08		26897964	222352657	1	12600											
DIO1	1733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54370442	54370442	+	Silent	SNP	A	A	G	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	G	54370442	A	G	54370442	2	3	200	1	0	0	0	0	0	0	0	1	4526	175	7	3		3	DIO1	1	54370442	Silent	SNP	A	TCGA-B0-5710-01A-11D-1669-08	27472478	54370442	194880179	2	12601											
RABGGTB	5876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	76255648	76255648	+	Silent	SNP	G	G	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	76255648	G	A	76255648	2	1	200	1	0	0	0	0	0	0	0	1	12981	1364	48	2		2	RABGGTB	1	76255648	Silent	SNP	G	TCGA-B0-5710-01A-11D-1669-08	21885206	76255648	172994973	3	12602											
NUP210L	91181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154112289	154112289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	154112289	G	A	154112289	3	1	200	1	0	0	0	0	1	0	0	0	10768	1261	44	2	5104	2	NUP210L	1	154112289	Missense_Mutation	SNP	G	TCGA-B0-5710-01A-11D-1669-08	77856641	154112289	95138332	4	12603											
LPIN1	23175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11911638	11911638	+	Missense_Mutation	SNP	C	C	A	rs145629147	byfrequency;alternate_allele	TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	11911638	C	A	11911638	3	1	200	1	0	0	0	0	1	0	0	0	8925	767	27	4	439	4	LPIN1	2	11911638	Missense_Mutation	SNP	C	TCGA-B0-5710-01A-11D-1669-08		11911638	231287735	5	12604											
ITSN2	50618	hgsc.bcm.edu;ucsc.edu	37	2	24435521	24435521	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	-	24435521	T	-	24435521	7	5	200	1	0	1	0	1	0	0	0	0	7934	1609	56	0	1038	0	ITSN2	2	24435521	Frame_Shift_Del	DEL	T	TCGA-B0-5710-01A-11D-1669-08	12523883	24435521	218763852	6	12605											
SLC5A7	60482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	108627273	108627273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	108627273	G	A	108627273	3	1	200	1	0	0	0	0	1	0	0	0	14683	1290	45	2	1729	2	SLC5A7	2	108627273	Missense_Mutation	SNP	G	TCGA-B0-5710-01A-11D-1669-08	84191752	108627273	134572100	7	12606											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179605552	179605552	+	Silent	SNP	G	G	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	179605552	G	A	179605552	2	1	200	1	0	0	0	0	0	0	0	1	16747	1306	46	2		2	TTN	2	179605552	Silent	SNP	G	TCGA-B0-5710-01A-11D-1669-08	70978279	179605552	63593821	8	12607											
VHL	7428	hgsc.bcm.edu	37	3	10183767	10183767	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	C	10183767	G	C	10183767	3	2	200	1	0	0	0	0	1	0	0	0	17174	1087	38	4	238	4	VHL	3	10183767	Missense_Mutation	SNP	G	TCGA-B0-5710-01A-11D-1669-08		10183767	187838663	9	12608											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643654	52643654	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	-	52643654	C	-	52643654	7	5	200	1	0	1	0	1	0	0	0	0	11498	913	32	0	2718	0	PBRM1	3	52643654	Frame_Shift_Del	DEL	C	TCGA-B0-5710-01A-11D-1669-08	42459887	52643654	145378776	10	12609											
CD96	10225	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	111343188	111343188	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	111343188	T	A	111343188	3	1	200	1	0	0	0	0	1	0	0	0	3050	1783	62	5	1348	5	CD96	3	111343188	Missense_Mutation	SNP	T	TCGA-B0-5710-01A-11D-1669-08	58699534	111343188	86679242	11	12610											
ACAP2	23527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	195066024	195066024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	195066024	C	A	195066024	3	1	200	1	0	0	0	0	1	0	0	0	119	913	32	4	2104	4	ACAP2	3	195066024	Missense_Mutation	SNP	C	TCGA-B0-5710-01A-11D-1669-08	83722836	195066024	2956406	12	12611											
RAB24	53917	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176728945	176728945	+	Silent	SNP	A	A	G	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	G	176728945	A	G	176728945	2	3	200	1	0	0	0	0	0	0	0	1	12924	175	7	3		3	RAB24	5	176728945	Silent	SNP	A	TCGA-B0-5710-01A-11D-1669-08		176728945	4186315	13	12612											
TFAP2A	7020	hgsc.bcm.edu	37	6	10410466	10410467	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	G	10410467	-	G	10410466	7	5	200	1	0	1	1	0	0	0	0	0	15799	1812	63	0	1189	0	TFAP2A	6	10410466	Frame_Shift_Ins	INS	-	TCGA-B0-5710-01A-11D-1669-08		10410466	160704601	14	12613											
SERINC1	57515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	122768141	122768141	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	C	122768141	G	C	122768141	3	2	200	1	0	0	0	0	1	0	0	0	14092	1029	36	4	365	4	SERINC1	6	122768141	Missense_Mutation	SNP	G	TCGA-B0-5710-01A-11D-1669-08	112357675	122768141	48346926	15	12614											
LATS1	9113	broad.mit.edu;ucsc.edu	37	6	150023180	150023180	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	150023180	T	T	150023180	3	4	200	1	0	0	0	0	1	0	0	0	8653	652	23	1	3337	1	LATS1	6	150023180	Missense_Mutation	SNP	C	TCGA-B0-5710-01A-11D-1669-08	27255039	150023180	21091887	16	12615											
CLDN4	1364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	73245666	73245666	+	Silent	SNP	C	C	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	73245666	C	T	73245666	2	4	200	1	0	0	0	0	0	0	0	1	3489	581	21	2		2	CLDN4	7	73245666	Silent	SNP	C	TCGA-B0-5710-01A-11D-1669-08		73245666	85892997	17	12616											
MYST3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	41804117	41804117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	G	41804117	A	G	41804117	3	3	200	1	0	0	0	0	1	0	0	0	10111	333	12	3	4050	3	MYST3	8	41804117	Missense_Mutation	SNP	A	TCGA-B0-5710-01A-11D-1669-08		41804117	104559905	18	12617											
PRUNE2	158471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	79461509	79461509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	G	79461509	A	G	79461509	3	3	200	1	0	0	0	0	1	0	0	0	12651	246	9	3	8900	3	PRUNE2	9	79461509	Missense_Mutation	SNP	A	TCGA-B0-5710-01A-11D-1669-08		79461509	61751922	19	12618											
MYO3A	53904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	26313006	26313006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	G	26313006	T	G	26313006	3	3	200	1	0	0	0	0	1	0	0	0	10083	1609	56	5	813	5	MYO3A	10	26313006	Missense_Mutation	SNP	T	TCGA-B0-5710-01A-11D-1669-08		26313006	109221741	20	12619											
ANKRD22	118932	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	90591656	90591656	+	Missense_Mutation	SNP	C	C	A	rs143516492	alternate_allele	TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	90591656	C	A	90591656	3	1	200	1	0	0	0	0	1	0	0	0	651	884	31	4	446	4	ANKRD22	10	90591656	Missense_Mutation	SNP	C	TCGA-B0-5710-01A-11D-1669-08	64278650	90591656	44943091	21	12620											
UBQLN3	50613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5528857	5528857	+	Silent	SNP	G	G	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	5528857	G	A	5528857	2	1	200	1	0	0	0	0	0	0	0	1	16910	1136	40	1		1	UBQLN3	11	5528857	Silent	SNP	G	TCGA-B0-5710-01A-11D-1669-08		5528857	129477659	22	12621											
DAGLA	747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61511889	61511889	+	Silent	SNP	C	C	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	61511889	C	T	61511889	2	4	200	1	0	0	0	0	0	0	0	1	4228	845	30	2		2	DAGLA	11	61511889	Silent	SNP	C	TCGA-B0-5710-01A-11D-1669-08	55983032	61511889	73494627	23	12622											
C11orf9	0	broad.mit.edu;ucsc.edu	37	11	61543864	61543864	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	G	61543864	G	G	61543864	3	3	200	1	0	0	0	0	1	0	0	0	1673	362	13	3	1520	3	C11orf9	11	61543864	Missense_Mutation	SNP	A	TCGA-B0-5710-01A-11D-1669-08	31975	61543864	73462652	24	12623											
NCAPD2	9918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6619242	6619242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	6619242	C	A	6619242	3	1	200	1	0	0	0	0	1	0	0	0	10212	840	29	4	215	4	NCAPD2	12	6619242	Missense_Mutation	SNP	C	TCGA-B0-5710-01A-11D-1669-08		6619242	127232653	25	12624											
SLCO1B3	28234	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21008017	21008017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	-	21008017	T	-	21008017	7	5	200	1	0	1	0	1	0	0	0	0	14737	1493	52	0	146	0	SLCO1B3	12	21008017	Frame_Shift_Del	DEL	T	TCGA-B0-5710-01A-11D-1669-08	14388775	21008017	112843878	26	12625											
DNAH10	196385	broad.mit.edu;ucsc.edu	37	12	124383326	124383326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	124383326	A	A	124383326	3	1	200	1	0	0	0	0	1	0	0	0	4600	739	26	4	9469	4	DNAH10	12	124383326	Missense_Mutation	SNP	C	TCGA-B0-5710-01A-11D-1669-08	103375309	124383326	9468569	27	12626											
UBC	7316	hgsc.bcm.edu	37	12	125398050	125398052	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	-	125398052	TGA	-	125398050	7	5	200	1	0	1	0	1	0	0	0	0	16854	1696	59	0	1793	0	UBC	12	125398050	In_Frame_Del	DEL	TGA	TCGA-B0-5710-01A-11D-1669-08	1014724	125398050	8453845	28	12627											
GTF2F2	2963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	45841372	45841372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	C	45841372	A	C	45841372	3	2	200	1	0	0	0	0	1	0	0	0	6866	246	9	5	517	5	GTF2F2	13	45841372	Missense_Mutation	SNP	A	TCGA-B0-5710-01A-11D-1669-08		45841372	69328506	29	12628											
SMEK1	55671	broad.mit.edu;hgsc.bcm.edu	37	14	91975891	91975891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	91975891	C	T	91975891	3	4	200	1	0	0	0	0	1	0	0	0	14806	652	23	1	2421	1	SMEK1	14	91975891	Missense_Mutation	SNP	C	TCGA-B0-5710-01A-11D-1669-08		91975891	15373649	30	12629											
RTL1	388015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	101351021	101351021	+	Silent	SNP	C	C	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	101351021	C	T	101351021	2	4	200	1	0	0	0	0	0	0	0	1	13737	871	31	1		1	RTL1	14	101351021	Silent	SNP	C	TCGA-B0-5710-01A-11D-1669-08	9375130	101351021	5998519	31	12630											
BLM	641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91304206	91304206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	C	91304206	A	C	91304206	3	2	200	1	0	0	0	0	1	0	0	0	1445	363	13	5	1625	5	BLM	15	91304206	Missense_Mutation	SNP	A	TCGA-B0-5710-01A-11D-1669-08		91304206	11227186	32	12631											
SF3B3	23450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	70594436	70594436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	70594436	G	A	70594436	3	1	200	1	0	0	0	0	1	0	0	0	14165	1116	39	1	2133	1	SF3B3	16	70594436	Missense_Mutation	SNP	G	TCGA-B0-5710-01A-11D-1669-08		70594436	19760317	33	12632											
NF1	4763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29687577	29687577	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	29687577	G	T	29687577	4	4	200	1	0	0	0	0	0	1	0	0	10363	1349	47	4	8520	4	NF1	17	29687577	Nonsense_Mutation	SNP	G	TCGA-B0-5710-01A-11D-1669-08		29687577	51507633	34	12633											
MRM1	79922	hgsc.bcm.edu;ucsc.edu	37	17	34958701	34958701	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	-	34958701	G	-	34958701	7	5	200	1	0	1	0	1	0	0	0	0	9778	991	35	0	464	0	MRM1	17	34958701	Frame_Shift_Del	DEL	G	TCGA-B0-5710-01A-11D-1669-08	5271124	34958701	46236509	35	12634											
GRN	2896	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42426617	42426617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	42426617	G	T	42426617	3	4	200	1	0	0	0	0	1	0	0	0	6811	1203	42	4	87	4	GRN	17	42426617	Missense_Mutation	SNP	G	TCGA-B0-5710-01A-11D-1669-08	7467916	42426617	38768593	36	12635											
SMURF2	64750	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62576936	62576936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	C	62576936	T	C	62576936	3	2	200	1	0	0	0	0	1	0	0	0	14833	1464	51	3	1551	3	SMURF2	17	62576936	Missense_Mutation	SNP	T	TCGA-B0-5710-01A-11D-1669-08	20150319	62576936	18618274	37	12636											
STXBP2	6813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7703632	7703632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	7703632	C	T	7703632	3	4	200	1	0	0	0	0	1	0	0	0	15365	875	31	1	64	1	STXBP2	19	7703632	Missense_Mutation	SNP	C	TCGA-B0-5710-01A-11D-1669-08		7703632	51425351	38	12637											
APLP1	333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36362618	36362618	+	Silent	SNP	G	G	A	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	36362618	G	A	36362618	2	1	200	1	0	0	0	0	0	0	0	1	778	1161	41	2		2	APLP1	19	36362618	Silent	SNP	G	TCGA-B0-5710-01A-11D-1669-08	28658986	36362618	22766365	39	12638											
NCAPH2	29781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50960439	50960439	+	Missense_Mutation	SNP	G	G	A	rs117383090	by1000genomes	TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	A	50960439	G	A	50960439	3	1	200	1	0	0	0	0	1	0	0	0	10217	1116	39	1	1222	1	NCAPH2	22	50960439	Missense_Mutation	SNP	G	TCGA-B0-5710-01A-11D-1669-08		50960439	344127	40	12639											
KIAA2022	340533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	73962035	73962035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5710-01A-11D-1669-08	TCGA-B0-5710-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12f1e370-c269-4b95-a89b-a1f3ae42e876	64dd13a7-1b36-43c0-af6d-dcc1c8205ec5	T	73962035	G	T	73962035	3	4	200	1	0	0	0	0	1	0	0	0	8276	1029	36	4	2201	4	KIAA2022	23	73962035	Missense_Mutation	SNP	G	TCGA-B0-5710-01A-11D-1669-08		73962035	81308525	41	12640											
IPP	3652	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46212019	46212019	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	46212019	A	T	46212019	3	4	201	1	0	0	0	0	1	0	0	0	7807	304	11	5	1823	5	IPP	1	46212019	Missense_Mutation	SNP	A	TCGA-B0-5711-01A-11D-1669-08		46212019	203038602	1	12641											
NPL	80896	hgsc.bcm.edu;ucsc.edu	37	1	182794926	182794926	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	-	182794926	A	-	182794926	7	5	201	1	0	1	0	1	0	0	0	0	10592	188	7	0	787	0	NPL	1	182794926	Frame_Shift_Del	DEL	A	TCGA-B0-5711-01A-11D-1669-08	136582907	182794926	66455695	2	12642											
GPR75	10936	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	54081819	54081819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	C	54081819	G	C	54081819	3	2	201	1	0	0	0	0	1	0	0	0	6715	1368	48	4	1551	4	GPR75	2	54081819	Missense_Mutation	SNP	G	TCGA-B0-5711-01A-11D-1669-08		54081819	189117554	3	12643											
COL5A2	1290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	189962055	189962055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	189962055	C	T	189962055	3	4	201	1	0	0	0	0	1	0	0	0	3699	869	30	2	4291	2	COL5A2	2	189962055	Missense_Mutation	SNP	C	TCGA-B0-5711-01A-11D-1669-08	135880236	189962055	53237318	4	12644											
ABCA12	26154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	215880269	215880269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	C	215880269	T	C	215880269	3	2	201	1	0	0	0	0	1	0	0	0	30	1638	57	3	6042	3	ABCA12	2	215880269	Missense_Mutation	SNP	T	TCGA-B0-5711-01A-11D-1669-08	25918214	215880269	27319104	5	12645											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191527	10191527	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	-	10191527	A	-	10191527	7	5	201	1	0	1	0	1	0	0	0	0	17174	246	9	0	530	0	VHL	3	10191527	Frame_Shift_Del	DEL	A	TCGA-B0-5711-01A-11D-1669-08		10191527	187830903	6	12646											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643898	52643898	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	52643898	A	T	52643898	4	4	201	1	0	0	0	0	0	1	0	0	11498	224	8	5	2962	5	PBRM1	3	52643898	Nonsense_Mutation	SNP	A	TCGA-B0-5711-01A-11D-1669-08	42452371	52643898	145378532	7	12647											
FAM13A	10144	hgsc.bcm.edu;ucsc.edu	37	4	89912229	89912229	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	-	89912229	A	-	89912229	7	5	201	1	0	1	0	1	0	0	0	0	5456	304	11	0	2688	0	FAM13A	4	89912229	Frame_Shift_Del	DEL	A	TCGA-B0-5711-01A-11D-1669-08		89912229	101242047	8	12648											
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	5462477	5462477	+	Silent	SNP	G	G	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	5462477	G	T	5462477	2	4	201	1	0	0	0	0	0	0	0	1	8209	1364	48	4		4	KIAA0947	5	5462477	Silent	SNP	G	TCGA-B0-5711-01A-11D-1669-08		5462477	175452783	9	12649											
OR10C1	442194	broad.mit.edu;hgsc.bcm.edu	37	6	29407843	29407843	+	Silent	SNP	C	C	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	29407843	C	T	29407843	2	4	201	1	0	0	0	0	0	0	0	1	10905	610	22	2		2	OR10C1	6	29407843	Silent	SNP	C	TCGA-B0-5711-01A-11D-1669-08		29407843	141707224	10	12650											
ELOVL5	60481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	53135507	53135507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	C	53135507	T	C	53135507	3	2	201	1	0	0	0	0	1	0	0	0	5079	1493	52	3	267	3	ELOVL5	6	53135507	Missense_Mutation	SNP	T	TCGA-B0-5711-01A-11D-1669-08	23727664	53135507	117979560	11	12651											
KHDRBS2	202559	broad.mit.edu;ucsc.edu	37	6	62604655	62604655	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	62604655	T	T	62604655	3	4	201	1	0	0	0	0	1	0	0	0	8154	1087	38	4	370	4	KHDRBS2	6	62604655	Missense_Mutation	SNP	G	TCGA-B0-5711-01A-11D-1669-08	9469148	62604655	108510412	12	12652											
SYNJ2	8871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	158495714	158495714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	158495714	G	T	158495714	3	4	201	1	0	0	0	0	1	0	0	0	15465	942	33	4	2298	4	SYNJ2	6	158495714	Missense_Mutation	SNP	G	TCGA-B0-5711-01A-11D-1669-08	95891059	158495714	12619353	13	12653											
SMC5	23137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	72892386	72892386	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	72892386	C	T	72892386	4	4	201	1	0	0	0	0	0	1	0	0	14799	827	29	2	555	2	SMC5	9	72892386	Nonsense_Mutation	SNP	C	TCGA-B0-5711-01A-11D-1669-08		72892386	68321045	14	12654											
ALDOB	229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	104187311	104187312	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	A	104187312	-	A	104187311	7	5	201	1	0	1	1	0	0	0	0	0	508	477	17	0	289	0	ALDOB	9	104187311	Frame_Shift_Ins	INS	-	TCGA-B0-5711-01A-11D-1669-08	31294925	104187311	37026120	15	12655											
OR2AG1	144125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6806283	6806283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	A	6806283	C	A	6806283	3	1	201	1	0	0	0	0	1	0	0	0	10991	564	20	4	17	4	OR2AG1	11	6806283	Missense_Mutation	SNP	C	TCGA-B0-5711-01A-11D-1669-08		6806283	128200233	16	12656											
AMBRA1	55626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	46567203	46567203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	A	46567203	G	A	46567203	3	1	201	1	0	0	0	0	1	0	0	0	565	1144	40	1	3184	1	AMBRA1	11	46567203	Missense_Mutation	SNP	G	TCGA-B0-5711-01A-11D-1669-08	39760920	46567203	88439313	17	12657											
LATS2	26524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	21557681	21557681	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	A	21557681	C	A	21557681	4	1	201	1	0	0	0	0	0	1	0	0	8654	893	31	4	1118	4	LATS2	13	21557681	Nonsense_Mutation	SNP	C	TCGA-B0-5711-01A-11D-1669-08		21557681	93612197	18	12658											
C14orf1	11161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	76118207	76118207	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	76118207	A	T	76118207	3	4	201	1	0	0	0	0	1	0	0	0	1735	72	3	5	180	5	C14orf1	14	76118207	Missense_Mutation	SNP	A	TCGA-B0-5711-01A-11D-1669-08		76118207	31231333	19	12659											
MEFV	4210	broad.mit.edu;ucsc.edu	37	16	3293876	3293876	+	Silent	SNP	G	A	A	rs104895161		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	A	3293876	A	A	3293876	2	1	201	1	0	0	0	0	0	0	0	1	9466	1074	38	1		1	MEFV	16	3293876	Silent	SNP	G	TCGA-B0-5711-01A-11D-1669-08		3293876	87060877	20	12660											
RNMT	8731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	13737037	13737037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	13737037	G	T	13737037	3	4	201	1	0	0	0	0	1	0	0	0	13519	933	33	4	592	4	RNMT	18	13737037	Missense_Mutation	SNP	G	TCGA-B0-5711-01A-11D-1669-08		13737037	64340211	21	12661											
MEP1B	4225	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	29788192	29788192	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	29788192	A	T	29788192	3	4	201	1	0	0	0	0	1	0	0	0	9483	179	7	5	911	5	MEP1B	18	29788192	Missense_Mutation	SNP	A	TCGA-B0-5711-01A-11D-1669-08	16051155	29788192	48289056	22	12662											
MYO5B	4645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	47438527	47438527	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	C	47438527	A	C	47438527	3	2	201	1	0	0	0	0	1	0	0	0	10086	72	3	5	3531	5	MYO5B	18	47438527	Missense_Mutation	SNP	A	TCGA-B0-5711-01A-11D-1669-08	17650335	47438527	30638721	23	12663											
ACTN4	81	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39216363	39216363	+	Splice_Site	SNP	G	G	A	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	A	39216363	G	A	39216363	5	1	201	1	0	0	0	0	0	0	1	0	207	1014	35	2	2076	2	ACTN4	19	39216363	Splice_Site	SNP	G	TCGA-B0-5711-01A-11D-1669-08		39216363	19912620	24	12664											
PAPL	390928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39597629	39597629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	39597629	C	T	39597629	3	4	201	1	0	0	0	0	1	0	0	0	11434	739	26	2	1198	2	PAPL	19	39597629	Missense_Mutation	SNP	C	TCGA-B0-5711-01A-11D-1669-08	381266	39597629	19531354	25	12665											
LGALS14	56891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40199946	40199946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	A	40199946	G	A	40199946	3	1	201	1	0	0	0	0	1	0	0	0	8748	971	34	2	533	2	LGALS14	19	40199946	Missense_Mutation	SNP	G	TCGA-B0-5711-01A-11D-1669-08	602317	40199946	18929037	26	12666											
LIPE	3991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42910438	42910438	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	A	42910438	T	A	42910438	3	1	201	1	0	0	0	0	1	0	0	0	8828	1435	50	5	1006	5	LIPE	19	42910438	Missense_Mutation	SNP	T	TCGA-B0-5711-01A-11D-1669-08	2710492	42910438	16218545	27	12667											
SFRS15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	33067196	33067196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	A	33067196	G	A	33067196	3	1	201	1	0	0	0	0	1	0	0	0	14184	1348	47	2	2321	2	SFRS15	21	33067196	Missense_Mutation	SNP	G	TCGA-B0-5711-01A-11D-1669-08		33067196	15062699	28	12668											
MCM3AP	8888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47663535	47663535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5711-01A-11D-1669-08	TCGA-B0-5711-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf09ae91-5523-494c-8f30-c26f6ba37624	bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea	T	47663535	G	T	47663535	3	4	201	1	0	0	0	0	1	0	0	0	9395	971	34	4	822	4	MCM3AP	21	47663535	Missense_Mutation	SNP	G	TCGA-B0-5711-01A-11D-1669-08	14596339	47663535	466360	29	12669											
MTOR	2475	broad.mit.edu	37	1	11174411	11174411	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	11174411	C	T	11174411	3	4	202	1	0	0	0	0	1	0	0	0	9961	478	17	2	409	2	MTOR	1	11174411	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08		11174411	238076210	1	12670											
BCL9	607	broad.mit.edu	37	1	147092835	147092835	+	Silent	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	147092835	C	T	147092835	2	4	202	1	0	0	0	0	0	0	0	1	1381	610	22	2		2	BCL9	1	147092835	Silent	SNP	C	TCGA-B0-5712-01A-11D-1669-08	135918424	147092835	102157786	2	12671											
SEMA6C	10500	broad.mit.edu	37	1	151108514	151108514	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	151108514	T	A	151108514	3	1	202	1	0	0	0	0	1	0	0	0	14054	1464	51	5	1688	5	SEMA6C	1	151108514	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	4015679	151108514	98142107	3	12672											
NPR1	4881	broad.mit.edu	37	1	153653153	153653153	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	153653153	G	T	153653153	3	4	202	1	0	0	0	0	1	0	0	0	10601	1377	48	4	904	4	NPR1	1	153653153	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	2544639	153653153	95597468	4	12673											
DUSP12	11266	broad.mit.edu	37	1	161722158	161722158	+	Splice_Site	DEL	A	A	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	161722158	A	-	161722158	8	5	202	1	0	1	0	1	0	0	1	0	4814	260	9	0	592	0	DUSP12	1	161722158	Splice_Site	DEL	A	TCGA-B0-5712-01A-11D-1669-08	8069005	161722158	87528463	5	12674											
RGS18	64407	broad.mit.edu	37	1	192128415	192128415	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	192128415	G	A	192128415	3	1	202	1	0	0	0	0	1	0	0	0	13313	1087	38	1	191	1	RGS18	1	192128415	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	30406257	192128415	57122206	6	12675											
SERTAD4	56256	broad.mit.edu	37	1	210415007	210415007	+	Silent	SNP	A	A	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	210415007	A	C	210415007	2	2	202	1	0	0	0	0	0	0	0	1	14136	352	13	5		5	SERTAD4	1	210415007	Silent	SNP	A	TCGA-B0-5712-01A-11D-1669-08	18286592	210415007	38835614	7	12676											
ZNF692	55657	broad.mit.edu	37	1	249151460	249151460	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	249151460	C	T	249151460	3	4	202	1	0	0	0	0	1	0	0	0	18109	893	31	1	1147	1	ZNF692	1	249151460	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	38736453	249151460	99161	8	12677											
MTA3	57504	broad.mit.edu	37	2	42924943	42924943	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	42924943	A	T	42924943	3	4	202	1	0	0	0	0	1	0	0	0	9917	304	11	5	1036	5	MTA3	2	42924943	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08		42924943	200274430	9	12678											
HAAO	23498	broad.mit.edu	37	2	43010461	43010461	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	43010461	C	T	43010461	3	4	202	1	0	0	0	0	1	0	0	0	6944	594	21	2	545	2	HAAO	2	43010461	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	85518	43010461	200188912	10	12679											
CNTNAP5	129684	broad.mit.edu	37	2	125555791	125555791	+	Silent	SNP	C	C	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	125555791	C	G	125555791	2	3	202	1	0	0	0	0	0	0	0	1	3652	581	21	4		4	CNTNAP5	2	125555791	Silent	SNP	C	TCGA-B0-5712-01A-11D-1669-08	82545330	125555791	117643582	11	12680											
TTN	7273	broad.mit.edu	37	2	179467028	179467028	+	Silent	SNP	G	G	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	179467028	G	T	179467028	2	4	202	1	0	0	0	0	0	0	0	1	16747	1164	41	4		4	TTN	2	179467028	Silent	SNP	G	TCGA-B0-5712-01A-11D-1669-08	53911237	179467028	63732345	12	12681											
ALS2CR11	151254	broad.mit.edu	37	2	202430518	202430518	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	202430518	G	A	202430518	3	1	202	1	0	0	0	0	1	0	0	0	552	971	34	2	4730	2	ALS2CR11	2	202430518	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	22963490	202430518	40768855	13	12682											
COL6A3	1293	broad.mit.edu	37	2	238287851	238287851	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	238287851	A	C	238287851	3	2	202	1	0	0	0	0	1	0	0	0	3703	14	1	5	7811	5	COL6A3	2	238287851	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	35857333	238287851	4911522	14	12683											
ASB1	51665	broad.mit.edu	37	2	239353298	239353298	+	Silent	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	239353298	G	A	239353298	2	1	202	1	0	0	0	0	0	0	0	1	1013	1074	38	1		1	ASB1	2	239353298	Silent	SNP	G	TCGA-B0-5712-01A-11D-1669-08	1065447	239353298	3846075	15	12684											
KIF1A	547	broad.mit.edu	37	2	241706374	241706374	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	241706374	C	A	241706374	4	1	202	1	0	0	0	0	0	1	0	0	8290	864	30	4	3577	4	KIF1A	2	241706374	Nonsense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	2353076	241706374	1492999	16	12685											
PBRM1	55193	broad.mit.edu	37	3	52651547	52651548	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	52651548	TC	-	52651547	7	5	202	1	0	1	0	1	0	0	0	0	11498	1783	62	0	3419	0	PBRM1	3	52651547	Frame_Shift_Del	DEL	TC	TCGA-B0-5712-01A-11D-1669-08		52651547	145370883	17	12686											
HEG1	57493	broad.mit.edu	37	3	124738166	124738166	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	124738166	A	G	124738166	3	3	202	1	0	0	0	0	1	0	0	0	7051	275	10	3	2669	3	HEG1	3	124738166	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	72086619	124738166	73284264	18	12687											
TFRC	7037	broad.mit.edu	37	3	195794940	195794941	+	In_Frame_Ins	INS	-	-	ATT			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	ATT	195794941	-	ATT	195794940	7	5	202	1	0	1	1	0	0	0	0	0	15824	14	1	0	1467	0	TFRC	3	195794940	In_Frame_Ins	INS	-	TCGA-B0-5712-01A-11D-1669-08	71056774	195794940	2227490	19	12688											
C6	729	broad.mit.edu	37	5	41186209	41186209	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	41186209	T	G	41186209	3	3	202	1	0	0	0	0	1	0	0	0	2317	1638	57	5	2167	5	C6	5	41186209	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08		41186209	139729051	20	12689											
MAP3K1	4214	broad.mit.edu	37	5	56184111	56184111	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	56184111	T	G	56184111	3	3	202	1	0	0	0	0	1	0	0	0	9250	1493	52	5	4390	5	MAP3K1	5	56184111	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	14997902	56184111	124731149	21	12690											
RASGRF2	5924	broad.mit.edu	37	5	80381640	80381640	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	80381640	C	-	80381640	7	5	202	1	0	1	0	1	0	0	0	0	13086	478	17	0	1211	0	RASGRF2	5	80381640	Frame_Shift_Del	DEL	C	TCGA-B0-5712-01A-11D-1669-08	24197529	80381640	100533620	22	12691											
MCTP1	79772	broad.mit.edu	37	5	94207041	94207041	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	94207041	T	-	94207041	7	5	202	1	0	1	0	1	0	0	0	0	9407	1606	56	0	921	0	MCTP1	5	94207041	Frame_Shift_Del	DEL	T	TCGA-B0-5712-01A-11D-1669-08	13825401	94207041	86708219	23	12692											
SLC23A1	9963	broad.mit.edu	37	5	138707769	138707769	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	138707769	A	-	138707769	7	5	202	1	0	1	0	1	0	0	0	0	14475	246	9	0	77	0	SLC23A1	5	138707769	Frame_Shift_Del	DEL	A	TCGA-B0-5712-01A-11D-1669-08	44500728	138707769	42207491	24	12693											
DIAPH1	1729	broad.mit.edu	37	5	140896574	140896574	+	Splice_Site	SNP	G	G	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	140896574	G	T	140896574	5	4	202	1	0	0	0	0	0	0	1	0	4520	1362	47	4	159	4	DIAPH1	5	140896574	Splice_Site	SNP	G	TCGA-B0-5712-01A-11D-1669-08	2188805	140896574	40018686	25	12694											
RBM22	55696	broad.mit.edu	37	5	150071443	150071443	+	Splice_Site	SNP	C	C	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	150071443	C	A	150071443	5	1	202	1	0	0	0	0	0	0	1	0	13135	521	18	4	133	4	RBM22	5	150071443	Splice_Site	SNP	C	TCGA-B0-5712-01A-11D-1669-08	9174869	150071443	30843817	26	12695											
NOP16	51491	broad.mit.edu	37	5	175811208	175811208	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	175811208	T	C	175811208	3	2	202	1	0	0	0	0	1	0	0	0	10544	1595	55	3		3	NOP16	5	175811208	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	25739765	175811208	5104052	27	12696											
TBC1D9B	23061	broad.mit.edu	37	5	179291015	179291015	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	179291015	T	-	179291015	7	5	202	1	0	1	0	1	0	0	0	0	15640	1538	54	0	570	0	TBC1D9B	5	179291015	Frame_Shift_Del	DEL	T	TCGA-B0-5712-01A-11D-1669-08	3479807	179291015	1624245	28	12697											
OR2J2	26707	broad.mit.edu	37	6	29141716	29141716	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	29141716	C	A	29141716	3	1	202	1	0	0	0	0	1	0	0	0	11010	565	20	4	306	4	OR2J2	6	29141716	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08		29141716	141973351	29	12698											
ZNF318	24149	broad.mit.edu	37	6	43316104	43316104	+	Silent	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	43316104	G	A	43316104	2	1	202	1	0	0	0	0	0	0	0	1	17848	1194	42	2		2	ZNF318	6	43316104	Silent	SNP	G	TCGA-B0-5712-01A-11D-1669-08	14174388	43316104	127798963	30	12699											
DST	667	broad.mit.edu	37	6	56473841	56473841	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	56473841	C	G	56473841	3	3	202	1	0	0	0	0	1	0	0	0	4785	812	28	4		4	DST	6	56473841	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	13157737	56473841	114641226	31	12700											
BAI3	577	broad.mit.edu	37	6	70071056	70071056	+	Silent	SNP	C	C	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	70071056	C	A	70071056	2	1	202	1	0	0	0	0	0	0	0	1	1300	842	30	4		4	BAI3	6	70071056	Silent	SNP	C	TCGA-B0-5712-01A-11D-1669-08	13597215	70071056	101044011	32	12701											
IL20RA	53832	broad.mit.edu	37	6	137322979	137322979	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	137322979	G	-	137322979	7	5	202	1	0	1	0	1	0	0	0	0	7675	991	35	0	287	0	IL20RA	6	137322979	Frame_Shift_Del	DEL	G	TCGA-B0-5712-01A-11D-1669-08	67251923	137322979	33792088	33	12702											
SYNE1	23345	broad.mit.edu	37	6	152557402	152557402	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	152557402	A	C	152557402	3	2	202	1	0	0	0	0	1	0	0	0	15457	98	4	5	6378	5	SYNE1	6	152557402	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	15234423	152557402	18557665	34	12703											
COX19	90639	broad.mit.edu	37	7	1009028	1009028	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	1009028	C	T	1009028	3	4	202	1	0	0	0	0	1	0	0	0	3770	922	32	2	17	2	COX19	7	1009028	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08		1009028	158129635	35	12704											
AKAP9	10142	broad.mit.edu	37	7	91722412	91722412	+	Splice_Site	SNP	A	A	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	91722412	A	G	91722412	5	3	202	1	0	0	0	0	0	0	1	0	459	57	2	3	9514	3	AKAP9	7	91722412	Splice_Site	SNP	A	TCGA-B0-5712-01A-11D-1669-08	90713384	91722412	67416251	36	12705											
COL1A2	1278	broad.mit.edu	37	7	94029506	94029506	+	Splice_Site	SNP	A	A	T	rs113180440		TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	94029506	A	T	94029506	5	4	202	1	0	0	0	0	0	0	1	0	3680	202	7	5	149	5	COL1A2	7	94029506	Splice_Site	SNP	A	TCGA-B0-5712-01A-11D-1669-08	2307094	94029506	65109157	37	12706											
ZAN	7455	broad.mit.edu	37	7	100352939	100352939	+	RNA	DEL	A	A	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	100352939	A	-	100352939	6	5	202	0	1	1	0	1	0	0	0	0	17525	304	11	0		0	ZAN	7	100352939	RNA	DEL	A	TCGA-B0-5712-01A-11D-1669-08	6323433	100352939	58785724	38	12707											
MYL10	93408	broad.mit.edu	37	7	101265479	101265479	+	Splice_Site	SNP	G	G	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	101265479	G	T	101265479	5	4	202	1	0	0	0	0	0	0	1	0	10051	1217	42	4	345	4	MYL10	7	101265479	Splice_Site	SNP	G	TCGA-B0-5712-01A-11D-1669-08	912540	101265479	57873184	39	12708											
TBXAS1	6916	broad.mit.edu	37	7	139611072	139611072	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	139611072	G	A	139611072	3	1	202	1	0	0	0	0	1	0	0	0	15676	1290	45	2	302	2	TBXAS1	7	139611072	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	38345593	139611072	19527591	40	12709											
WDR60	55112	broad.mit.edu	37	7	158705779	158705779	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	158705779	T	A	158705779	3	1	202	1	0	0	0	0	1	0	0	0	17323	1638	57	5	1744	5	WDR60	7	158705779	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	19094707	158705779	432884	41	12710											
MOS	4342	broad.mit.edu	37	8	57025710	57025710	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	57025710	G	A	57025710	3	1	202	1	0	0	0	0	1	0	0	0	9719	1203	42	2	211	2	MOS	8	57025710	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08		57025710	89338312	42	12711											
DDX31	64794	broad.mit.edu	37	9	135535153	135535153	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	135535153	C	G	135535153	3	3	202	1	0	0	0	0	1	0	0	0	4358	565	20	4	1844	4	DDX31	9	135535153	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08		135535153	5678278	43	12712											
WDR5	11091	broad.mit.edu	37	9	137007499	137007499	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	137007499	T	G	137007499	3	3	202	1	0	0	0	0	1	0	0	0	17315	1838	64	5	417	5	WDR5	9	137007499	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	1472346	137007499	4205932	44	12713											
CUBN	8029	broad.mit.edu	37	10	17165680	17165680	+	Silent	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	17165680	G	A	17165680	2	1	202	1	0	0	0	0	0	0	0	1	4053	1368	48	2		2	CUBN	10	17165680	Silent	SNP	G	TCGA-B0-5712-01A-11D-1669-08		17165680	118369067	45	12714											
ARMC4	55130	broad.mit.edu	37	10	28149666	28149666	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	28149666	C	G	28149666	3	3	202	1	0	0	0	0	1	0	0	0	953	536	19	4	233	4	ARMC4	10	28149666	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	10983986	28149666	107385081	46	12715											
ARID5B	84159	broad.mit.edu	37	10	63851371	63851371	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	63851371	A	G	63851371	3	3	202	1	0	0	0	0	1	0	0	0	922	333	12	3	2187	3	ARID5B	10	63851371	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	35701705	63851371	71683376	47	12716											
ADAMTS14	140766	broad.mit.edu	37	10	72511387	72511387	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	72511387	A	G	72511387	3	3	202	1	0	0	0	0	1	0	0	0	259	131	5	3	2656	3	ADAMTS14	10	72511387	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	8660016	72511387	63023360	48	12717											
EIF5AL1	143244	broad.mit.edu	37	10	81272785	81272785	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	81272785	A	G	81272785	3	3	202	1	0	0	0	0	1	0	0	0	5045	391	14	3	382	3	EIF5AL1	10	81272785	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	8761398	81272785	54261962	49	12718											
ZDHHC16	84287	broad.mit.edu	37	10	99213413	99213413	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	99213413	C	T	99213413	3	4	202	1	0	0	0	0	1	0	0	0	17618	739	26	2	701	2	ZDHHC16	10	99213413	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	17940628	99213413	36321334	50	12719											
CALHM1	255022	broad.mit.edu	37	10	105215351	105215351	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	105215351	C	A	105215351	4	1	202	1	0	0	0	0	0	1	0	0	2584	864	30	4	335	4	CALHM1	10	105215351	Nonsense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	6001938	105215351	30319396	51	12720											
IRF7	3665	broad.mit.edu	37	11	614335	614335	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	614335	G	T	614335	3	4	202	1	0	0	0	0	1	0	0	0	7842	1000	35	4	1017	4	IRF7	11	614335	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08		614335	134392181	52	12721											
CHID1	66005	broad.mit.edu	37	11	870149	870149	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	870149	C	G	870149	3	3	202	1	0	0	0	0	1	0	0	0	3347	681	24	4	134	4	CHID1	11	870149	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	255814	870149	134136367	53	12722											
DENND5A	23258	broad.mit.edu	37	11	9228258	9228258	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	9228258	C	T	9228258	3	4	202	1	0	0	0	0	1	0	0	0	4438	536	19	1	3694	1	DENND5A	11	9228258	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	8358109	9228258	125778258	54	12723											
C11orf58	10944	broad.mit.edu	37	11	16774369	16774369	+	Missense_Mutation	SNP	T	T	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	16774369	T	A	16774369	3	1	202	1	0	0	0	0	1	0	0	0	1653	1538	54	5	260	5	C11orf58	11	16774369	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	7546111	16774369	118232147	55	12724											
HTATIP2	10553	broad.mit.edu	37	11	20403771	20403771	+	Silent	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	20403771	T	C	20403771	2	2	202	1	0	0	0	0	0	0	0	1	7439	1567	55	3		3	HTATIP2	11	20403771	Silent	SNP	T	TCGA-B0-5712-01A-11D-1669-08	3629402	20403771	114602745	56	12725											
DAK	26007	broad.mit.edu	37	11	61109346	61109346	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	61109346	C	A	61109346	3	1	202	1	0	0	0	0	1	0	0	0	4230	507	18	4	639	4	DAK	11	61109346	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	40705575	61109346	73897170	57	12726											
SLC22A9	114571	broad.mit.edu	37	11	63177323	63177323	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	63177323	A	G	63177323	3	3	202	1	0	0	0	0	1	0	0	0	14474	275	10	3	1689	3	SLC22A9	11	63177323	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	2067977	63177323	71829193	58	12727											
MAP3K11	4296	broad.mit.edu	37	11	65380540	65380540	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	65380540	G	A	65380540	3	1	202	1	0	0	0	0	1	0	0	0	9252	1319	46	2	1895	2	MAP3K11	11	65380540	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	2203217	65380540	69625976	59	12728											
MYO7A	4647	broad.mit.edu	37	11	76909563	76909563	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	76909563	G	A	76909563	3	1	202	1	0	0	0	0	1	0	0	0	10089	1145	40	1	4629	1	MYO7A	11	76909563	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	11529023	76909563	58096953	60	12729											
INTS4	92105	broad.mit.edu	37	11	77672030	77672030	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	77672030	G	-	77672030	7	5	202	1	0	1	0	1	0	0	0	0	7787	1348	47	0	2341	0	INTS4	11	77672030	Frame_Shift_Del	DEL	G	TCGA-B0-5712-01A-11D-1669-08	762467	77672030	57334486	61	12730											
HSPA8	3312	broad.mit.edu	37	11	122930898	122930898	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	122930898	T	C	122930898	3	2	202	1	0	0	0	0	1	0	0	0	7423	1406	49	3	1474	3	HSPA8	11	122930898	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	45258868	122930898	12075618	62	12731											
LRRK2	120892	broad.mit.edu	37	12	40757280	40757280	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	40757280	A	G	40757280	3	3	202	1	0	0	0	0	1	0	0	0	9040	14	1	3	7295	3	LRRK2	12	40757280	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08		40757280	93094615	63	12732											
PDZRN4	29951	broad.mit.edu	37	12	41967638	41967638	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	41967638	G	C	41967638	3	2	202	1	0	0	0	0	1	0	0	0	11717	1020	36	4	3168	4	PDZRN4	12	41967638	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	1210358	41967638	91884257	64	12733											
C12orf54	121273	broad.mit.edu	37	12	48888763	48888763	+	Splice_Site	SNP	A	A	G	rs2705132	by1000genomes	TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	48888763	A	G	48888763	5	3	202	1	0	0	0	0	0	0	1	0	1701	347	12	3		3	C12orf54	12	48888763	Splice_Site	SNP	A	TCGA-B0-5712-01A-11D-1669-08	6921125	48888763	84963132	65	12734											
TUBA1C	84790	broad.mit.edu	37	12	49666782	49666782	+	Silent	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	49666782	T	C	49666782	2	2	202	1	0	0	0	0	0	0	0	1	16757	1567	55	3		3	TUBA1C	12	49666782	Silent	SNP	T	TCGA-B0-5712-01A-11D-1669-08	778019	49666782	84185113	66	12735											
CSRNP2	81566	broad.mit.edu	37	12	51467805	51467805	+	Missense_Mutation	SNP	A	A	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	51467805	A	T	51467805	3	4	202	1	0	0	0	0	1	0	0	0	3966	159	6	5	1431	5	CSRNP2	12	51467805	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	1801023	51467805	82384090	67	12736											
TENC1	23371	broad.mit.edu	37	12	53452893	53452893	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	53452893	C	-	53452893	7	5	202	1	0	1	0	1	0	0	0	0	15770	855	30	0	1647	0	TENC1	12	53452893	Frame_Shift_Del	DEL	C	TCGA-B0-5712-01A-11D-1669-08	1985088	53452893	80399002	68	12737											
RARG	5916	broad.mit.edu	37	12	53621180	53621180	+	Silent	SNP	G	G	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	53621180	G	C	53621180	2	2	202	1	0	0	0	0	0	0	0	1	13067	1190	42	4		4	RARG	12	53621180	Silent	SNP	G	TCGA-B0-5712-01A-11D-1669-08	168287	53621180	80230715	69	12738											
EEA1	8411	broad.mit.edu	37	12	93192829	93192829	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	93192829	T	C	93192829	3	2	202	1	0	0	0	0	1	0	0	0	4923	1493	52	3	1465	3	EEA1	12	93192829	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	39571649	93192829	40659066	70	12739											
TMED2	10959	broad.mit.edu	37	12	124069310	124069310	+	Missense_Mutation	SNP	A	A	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	124069310	A	G	124069310	3	3	202	1	0	0	0	0	1	0	0	0	16016	333	12	3	129	3	TMED2	12	124069310	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	30876481	124069310	9782585	71	12740											
ATP6V0A2	23545	broad.mit.edu	37	12	124218515	124218515	+	Missense_Mutation	SNP	G	G	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	124218515	G	C	124218515	3	2	202	1	0	0	0	0	1	0	0	0	1169	1233	43	4	717	4	ATP6V0A2	12	124218515	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	149205	124218515	9633380	72	12741											
TUBGCP3	10426	broad.mit.edu	37	13	113181276	113181276	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	113181276	G	A	113181276	3	1	202	1	0	0	0	0	1	0	0	0	16779	942	33	2	1228	2	TUBGCP3	13	113181276	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08		113181276	1988602	73	12742											
RTN1	6252	broad.mit.edu	37	14	60069841	60069841	+	Splice_Site	SNP	C	C	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	60069841	C	A	60069841	5	1	202	1	0	0	0	0	0	0	1	0	13738	753	26	4	108	4	RTN1	14	60069841	Splice_Site	SNP	C	TCGA-B0-5712-01A-11D-1669-08		60069841	47279699	74	12743											
MAX	4149	broad.mit.edu	37	14	65544727	65544727	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	65544727	C	-	65544727	7	5	202	1	0	1	0	1	0	0	0	0	9346	797	28	0	507	0	MAX	14	65544727	Frame_Shift_Del	DEL	C	TCGA-B0-5712-01A-11D-1669-08	5474886	65544727	41804813	75	12744											
ADAM20	8748	broad.mit.edu	37	14	70991488	70991488	+	Missense_Mutation	SNP	T	T	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	70991488	T	G	70991488	3	3	202	1	0	0	0	0	1	0	0	0	242	1493	52	5	2197	5	ADAM20	14	70991488	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	5446761	70991488	36358052	76	12745											
YLPM1	56252	broad.mit.edu	37	14	75230946	75230947	+	Frame_Shift_Ins	INS	-	-	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	75230947	-	C	75230946	7	5	202	1	0	1	1	0	0	0	0	0	17498	1087	38	0	756	0	YLPM1	14	75230946	Frame_Shift_Ins	INS	-	TCGA-B0-5712-01A-11D-1669-08	4239458	75230946	32118594	77	12746											
ANKRD9	122416	broad.mit.edu	37	14	102973996	102973996	+	Silent	SNP	G	G	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	102973996	G	C	102973996	2	2	202	1	0	0	0	0	0	0	0	1	687	929	33	4		4	ANKRD9	14	102973996	Silent	SNP	G	TCGA-B0-5712-01A-11D-1669-08	27743050	102973996	4375544	78	12747											
RPAP1	26015	broad.mit.edu	37	15	41823330	41823330	+	Silent	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	41823330	C	T	41823330	2	4	202	1	0	0	0	0	0	0	0	1	13554	680	24	2		2	RPAP1	15	41823330	Silent	SNP	C	TCGA-B0-5712-01A-11D-1669-08		41823330	60708062	79	12748											
IQCH	64799	broad.mit.edu	37	15	67664907	67664907	+	Silent	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	67664907	T	C	67664907	2	2	202	1	0	0	0	0	0	0	0	1	7818	1800	63	3		3	IQCH	15	67664907	Silent	SNP	T	TCGA-B0-5712-01A-11D-1669-08	25841577	67664907	34866485	80	12749											
MCTP2	55784	broad.mit.edu	37	15	94942208	94942208	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	94942208	A	-	94942208	7	5	202	1	0	1	0	1	0	0	0	0	9408	246	9	0	1861	0	MCTP2	15	94942208	Frame_Shift_Del	DEL	A	TCGA-B0-5712-01A-11D-1669-08	27277301	94942208	7589184	81	12750											
CIITA	4261	broad.mit.edu	37	16	10997754	10997754	+	Splice_Site	SNP	T	T	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	10997754	T	A	10997754	5	1	202	1	0	0	0	0	0	0	1	0	3430	1652	57	5	973	5	CIITA	16	10997754	Splice_Site	SNP	T	TCGA-B0-5712-01A-11D-1669-08		10997754	79356999	82	12751											
SEPHS2	22928	broad.mit.edu	37	16	30455759	30455759	+	Silent	SNP	G	G	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	30455759	G	T	30455759	2	4	202	1	0	0	0	0	0	0	0	1	14068	1335	47	4		4	SEPHS2	16	30455759	Silent	SNP	G	TCGA-B0-5712-01A-11D-1669-08	19458005	30455759	59898994	83	12752											
NUDT21	11051	broad.mit.edu	37	16	56473652	56473652	+	Missense_Mutation	SNP	C	C	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	56473652	C	G	56473652	3	3	202	1	0	0	0	0	1	0	0	0	10745	623	22	4	311	4	NUDT21	16	56473652	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	26017893	56473652	33881101	84	12753											
DPEP1	1800	broad.mit.edu	37	16	89702720	89702720	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	89702720	C	T	89702720	3	4	202	1	0	0	0	0	1	0	0	0	4715	759	27	1	296	1	DPEP1	16	89702720	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	33229068	89702720	652033	85	12754											
RPA1	6117	broad.mit.edu	37	17	1782610	1782610	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	1782610	G	A	1782610	3	1	202	1	0	0	0	0	1	0	0	0	13549	1319	46	2	899	2	RPA1	17	1782610	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08		1782610	79412600	86	12755	160	2									
RPA1	6117	broad.mit.edu	37	17	1782612	1782612	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	1782612	C	T	1782612	3	4	202	1	0	0	0	0	1	0	0	0	13549	623	22	2	901	2	RPA1	17	1782612	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	2	1782612	79412598	87	12756	160	2									
KIF1C	10749	broad.mit.edu	37	17	4916956	4916956	+	Silent	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	4916956	C	T	4916956	2	4	202	1	0	0	0	0	0	0	0	1	8292	506	18	2		2	KIF1C	17	4916956	Silent	SNP	C	TCGA-B0-5712-01A-11D-1669-08	3134344	4916956	76278254	88	12757											
NEURL4	84461	broad.mit.edu	37	17	7228990	7228990	+	Missense_Mutation	SNP	G	G	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	7228990	G	T	7228990	3	4	202	1	0	0	0	0	1	0	0	0	10354	991	35	4	3444	4	NEURL4	17	7228990	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	2312034	7228990	73966220	89	12758											
DNAH2	146754	broad.mit.edu	37	17	7721011	7721011	+	Missense_Mutation	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	7721011	G	A	7721011	3	1	202	1	0	0	0	0	1	0	0	0	4604	1145	40	1	10411	1	DNAH2	17	7721011	Missense_Mutation	SNP	G	TCGA-B0-5712-01A-11D-1669-08	492021	7721011	73474199	90	12759											
SUPT6H	6830	broad.mit.edu	37	17	27000506	27000506	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	27000506	A	C	27000506	3	2	202	1	0	0	0	0	1	0	0	0	15412	98	4	5	89	5	SUPT6H	17	27000506	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	19279495	27000506	54194704	91	12760											
SSH2	85464	broad.mit.edu	37	17	28022532	28022533	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	28022533	-	G	28022532	7	5	202	1	0	1	1	0	0	0	0	0	15197	1812	63	0	4098	0	SSH2	17	28022532	Frame_Shift_Ins	INS	-	TCGA-B0-5712-01A-11D-1669-08	1022026	28022532	53172678	92	12761											
MAPT	4137	broad.mit.edu	37	17	44091681	44091681	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	44091681	C	T	44091681	3	4	202	1	0	0	0	0	1	0	0	0	9304	826	29	2	2039	2	MAPT	17	44091681	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	16069149	44091681	37103529	93	12762											
KPNB1	3837	broad.mit.edu	37	17	45747173	45747173	+	Silent	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	45747173	C	T	45747173	2	4	202	1	0	0	0	0	0	0	0	1	8442	680	24	2		2	KPNB1	17	45747173	Silent	SNP	C	TCGA-B0-5712-01A-11D-1669-08	1655492	45747173	35448037	94	12763											
CNDP2	55748	broad.mit.edu	37	18	72180800	72180800	+	Nonsense_Mutation	SNP	T	T	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	72180800	T	A	72180800	4	1	202	1	0	0	0	0	0	1	0	0	3596	1821	63	5	775	5	CNDP2	18	72180800	Nonsense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08		72180800	5896448	95	12764											
CNDP1	84735	broad.mit.edu	37	18	72247364	72247364	+	Splice_Site	SNP	A	A	G			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	G	72247364	A	G	72247364	5	3	202	1	0	0	0	0	0	0	1	0	3595	434	15	3	1204	3	CNDP1	18	72247364	Splice_Site	SNP	A	TCGA-B0-5712-01A-11D-1669-08	66564	72247364	5829884	96	12765											
THOP1	7064	broad.mit.edu	37	19	2794798	2794798	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	2794798	C	T	2794798	3	4	202	1	0	0	0	0	1	0	0	0	15883	855	30	2	276	2	THOP1	19	2794798	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08		2794798	56334185	97	12766											
MUC16	94025	broad.mit.edu	37	19	9076119	9076119	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	9076119	A	C	9076119	3	2	202	1	0	0	0	0	1	0	0	0	9980	131	5	5	32524	5	MUC16	19	9076119	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	6281321	9076119	50052864	98	12767											
CATSPERG	57828	broad.mit.edu	37	19	38857909	38857909	+	Silent	SNP	C	C	T	rs144017491	byFrequency	TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	38857909	C	T	38857909	2	4	202	1	0	0	0	0	0	0	0	1	2694	776	27	1		1	CATSPERG	19	38857909	Silent	SNP	C	TCGA-B0-5712-01A-11D-1669-08	29781790	38857909	20271074	99	12768											
ARHGAP35	2909	broad.mit.edu	37	19	47424034	47424034	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	47424034	T	C	47424034	3	2	202	1	0	0	0	0	1	0	0	0	6802	1493	52	3	2104	3	ARHGAP35	19	47424034	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	8566125	47424034	11704949	100	12769											
KLK3	354	broad.mit.edu	37	19	51362828	51362828	+	Missense_Mutation	SNP	A	A	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	51362828	A	C	51362828	3	2	202	1	0	0	0	0	1	0	0	0	8412	333	12	5	695	5	KLK3	19	51362828	Missense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	3938794	51362828	7766155	101	12770											
RRBP1	6238	broad.mit.edu	37	20	17600277	17600277	+	Splice_Site	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	17600277	C	T	17600277	5	4	202	1	0	0	0	0	0	0	1	0	13691	521	18	2	584	2	RRBP1	20	17600277	Splice_Site	SNP	C	TCGA-B0-5712-01A-11D-1669-08		17600277	45425243	102	12771											
DNMT3B	1789	broad.mit.edu	37	20	31383331	31383331	+	Missense_Mutation	SNP	C	C	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	31383331	C	A	31383331	3	1	202	1	0	0	0	0	1	0	0	0	4679	827	29	4	1321	4	DNMT3B	20	31383331	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	13783054	31383331	31642189	103	12772											
CHRNA4	1137	broad.mit.edu	37	20	61981066	61981066	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	61981066	C	T	61981066	3	4	202	1	0	0	0	0	1	0	0	0	3387	652	23	1	194	1	CHRNA4	20	61981066	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	30597735	61981066	1044454	104	12773											
CNKSR2	22866	broad.mit.edu	37	X	21519646	21519646	+	Silent	SNP	A	A	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	21519646	A	C	21519646	2	2	202	1	0	0	0	0	0	0	0	1	3609	175	7	5		5	CNKSR2	23	21519646	Silent	SNP	A	TCGA-B0-5712-01A-11D-1669-08		21519646	133750914	105	12774											
GK	2710	broad.mit.edu	37	X	30738149	30738149	+	Silent	SNP	G	G	A			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	A	30738149	G	A	30738149	2	1	202	1	0	0	0	0	0	0	0	1	6427	1020	36	2		2	GK	23	30738149	Silent	SNP	G	TCGA-B0-5712-01A-11D-1669-08	9218503	30738149	124532411	106	12775											
HUWE1	10075	broad.mit.edu	37	X	53563622	53563622	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	53563622	T	C	53563622	3	2	202	1	0	0	0	0	1	0	0	0	7468	1512	53	3	1004	3	HUWE1	23	53563622	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	22825473	53563622	101706938	107	12776											
EFNB1	1947	broad.mit.edu	37	X	68060246	68060246	+	Nonsense_Mutation	SNP	A	A	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	68060246	A	T	68060246	4	4	202	1	0	0	0	0	0	1	0	0	4957	247	9	5	808	5	EFNB1	23	68060246	Nonsense_Mutation	SNP	A	TCGA-B0-5712-01A-11D-1669-08	14496624	68060246	87210314	108	12777											
ERCC6L	54821	broad.mit.edu	37	X	71427585	71427585	+	Silent	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	71427585	T	C	71427585	2	2	202	1	0	0	0	0	0	0	0	1	5220	1664	58	3		3	ERCC6L	23	71427585	Silent	SNP	T	TCGA-B0-5712-01A-11D-1669-08	3367339	71427585	83842975	109	12778											
KLHL13	90293	broad.mit.edu	37	X	117043342	117043342	+	Missense_Mutation	SNP	T	T	C			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	C	117043342	T	C	117043342	3	2	202	1	0	0	0	0	1	0	0	0	8376	1850	64	3	691	3	KLHL13	23	117043342	Missense_Mutation	SNP	T	TCGA-B0-5712-01A-11D-1669-08	45615757	117043342	38227218	110	12779											
THOC2	57187	broad.mit.edu	37	X	122748006	122748007	+	Frame_Shift_Ins	INS	-	-	TGGACAGTGG			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	TGGACAGTGG	122748007	-	TGGACAGTGG	122748006	7	5	202	1	0	1	1	0	0	0	0	0	15877	1609	56	0	455	0	THOC2	23	122748006	Frame_Shift_Ins	INS	-	TCGA-B0-5712-01A-11D-1669-08	5704664	122748006	32522554	111	12780											
STAG2	10735	broad.mit.edu	37	X	123200270	123200280	+	Frame_Shift_Del	DEL	AAAGCAGCTCT	AAAGCAGCTCT	-			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	-	123200280	AAAGCAGCTCT	-	123200270	7	5	202	1	0	1	0	1	0	0	0	0	15255	246	9	0	2331	0	STAG2	23	123200270	Frame_Shift_Del	DEL	AAAGCAGCTCT	TCGA-B0-5712-01A-11D-1669-08	452264	123200270	32070290	112	12781											
CDR1	1038	broad.mit.edu	37	X	139866077	139866077	+	Missense_Mutation	SNP	C	C	T			TCGA-B0-5712-01A-11D-1669-08	TCGA-B0-5712-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6bb18fc9-538b-4f01-8fd2-627e55dfd2e4	a8477a84-8b4d-4260-931a-35d03d574e09	T	139866077	C	T	139866077	3	4	202	1	0	0	0	0	1	0	0	0	3173	913	32	2	337	2	CDR1	23	139866077	Missense_Mutation	SNP	C	TCGA-B0-5712-01A-11D-1669-08	16665807	139866077	15404483	113	12782											
RER1	11079	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	2333758	2333758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	2333758	A	G	2333758	3	3	203	1	0	0	0	0	1	0	0	0	13243	449	16	3	496	3	RER1	1	2333758	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08		2333758	246916863	1	12783											
ARID1A	8289	hgsc.bcm.edu;ucsc.edu	37	1	27105569	27105570	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	TC	TC	TC	-	TC	TC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	-	27105570	TC	-	27105569	7	5	203	1	0	1	0	1	0	0	0	0	913	1435	50	0	5258	0	ARID1A	1	27105569	Frame_Shift_Del	DEL	TC	TCGA-B0-5713-01A-11D-1669-08	24771811	27105569	222145052	2	12784											
MSH4	4438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	76262748	76262748	+	Silent	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	76262748	T	C	76262748	2	2	203	1	0	0	0	0	0	0	0	1	9879	1538	54	3		3	MSH4	1	76262748	Silent	SNP	T	TCGA-B0-5713-01A-11D-1669-08	49157179	76262748	172987873	3	12785											
LPPR4	9890	broad.mit.edu;ucsc.edu	37	1	99767414	99767414	+	Silent	SNP	T	C	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	99767414	C	C	99767414	2	2	203	1	0	0	0	0	0	0	0	1	8934	1500	52	3		3	LPPR4	1	99767414	Silent	SNP	T	TCGA-B0-5713-01A-11D-1669-08	23504666	99767414	149483207	4	12786											
GON4L	54856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155747557	155747557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	155747557	C	A	155747557	3	1	203	1	0	0	0	0	1	0	0	0	6579	796	28	4	4964	4	GON4L	1	155747557	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	55980143	155747557	93503064	5	12787											
PPFIA4	8497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203024644	203024644	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	-	203024644	A	-	203024644	7	5	203	1	0	1	0	1	0	0	0	0	12319	349	13	0	406	0	PPFIA4	1	203024644	Frame_Shift_Del	DEL	A	TCGA-B0-5713-01A-11D-1669-08	47277087	203024644	46225977	6	12788											
FMOD	2331	broad.mit.edu;ucsc.edu	37	1	203316461	203316461	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	203316461	T	T	203316461	3	4	203	1	0	0	0	0	1	0	0	0	5966	1261	44	4	200	4	FMOD	1	203316461	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	291817	203316461	45934160	7	12789											
RAD51AP2	729475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	17699551	17699551	+	Silent	SNP	G	G	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	17699551	G	T	17699551	2	4	203	1	0	0	0	0	0	0	0	1	13000	929	33	4		4	RAD51AP2	2	17699551	Silent	SNP	G	TCGA-B0-5713-01A-11D-1669-08		17699551	225499822	8	12790											
NRBP1	29959	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27656879	27656879	+	Silent	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	27656879	T	C	27656879	2	2	203	1	0	0	0	0	0	0	0	1	10649	1403	49	3		3	NRBP1	2	27656879	Silent	SNP	T	TCGA-B0-5713-01A-11D-1669-08	9957328	27656879	215542494	9	12791											
PTPN18	26469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	131116984	131116984	+	Silent	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	131116984	C	T	131116984	2	4	203	1	0	0	0	0	0	0	0	1	12795	738	26	2		2	PTPN18	2	131116984	Silent	SNP	C	TCGA-B0-5713-01A-11D-1669-08	103460105	131116984	112082389	10	12792											
TMEM169	92691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	216965265	216965265	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	216965265	A	T	216965265	3	4	203	1	0	0	0	0	1	0	0	0	16096	21	1	5	900	5	TMEM169	2	216965265	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	85848281	216965265	26234108	11	12793											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191469	10191469	+	Splice_Site	SNP	A	A	G	rs5030816		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	10191469	A	G	10191469	5	3	203	1	0	0	0	0	0	0	1	0	17174	202	7	3	472	3	VHL	3	10191469	Splice_Site	SNP	A	TCGA-B0-5713-01A-11D-1669-08		10191469	187830961	12	12794											
GPR62	118442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	51990645	51990645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	51990645	T	A	51990645	3	1	203	1	0	0	0	0	1	0	0	0	6710	1551	54	5	979	5	GPR62	3	51990645	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	41799176	51990645	146031785	13	12795											
PBRM1	55193	broad.mit.edu;ucsc.edu	37	3	52678783	52678784	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	52678784	T	T	52678783	7	5	203	1	0	1	1	0	0	0	0	0	11498	449	16	0	4156	0	PBRM1	3	52678783	Frame_Shift_Ins	INS	-	TCGA-B0-5713-01A-11D-1669-08	688138	52678783	145343647	14	12796											
KBTBD8	84541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	67058722	67058722	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	67058722	G	C	67058722	3	2	203	1	0	0	0	0	1	0	0	0	8006	933	33	4	1733	4	KBTBD8	3	67058722	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	14379939	67058722	130963708	15	12797											
HGD	3081	broad.mit.edu;hgsc.bcm.edu	37	3	120369637	120369637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	120369637	T	C	120369637	3	2	203	1	0	0	0	0	1	0	0	0	7091	1638	57	3	955	3	HGD	3	120369637	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	53310915	120369637	77652793	16	12798											
ADCY5	111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	123044195	123044195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	123044195	G	T	123044195	3	4	203	1	0	0	0	0	1	0	0	0	297	1357	47	4	1779	4	ADCY5	3	123044195	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	2674558	123044195	74978235	17	12799											
TOPBP1	11073	broad.mit.edu;hgsc.bcm.edu	37	3	133329915	133329915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	133329915	C	A	133329915	3	1	203	1	0	0	0	0	1	0	0	0	16381	913	32	4	478	4	TOPBP1	3	133329915	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	10285720	133329915	64692515	18	12800											
PLD1	5337	broad.mit.edu;hgsc.bcm.edu	37	3	171377081	171377081	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	171377081	A	T	171377081	3	4	203	1	0	0	0	0	1	0	0	0	12052	246	9	5	901	5	PLD1	3	171377081	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	38047166	171377081	26645349	19	12801											
PIK3CA	5290	broad.mit.edu	37	3	178952077	178952077	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	178952077	A	A	178952077	3	1	203	1	0	0	0	0	1	0	0	0	11920	1461	51	5	3210	5	PIK3CA	3	178952077	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	7574996	178952077	19070353	20	12802											
KNG1	3827	hgsc.bcm.edu;ucsc.edu	37	3	186460113	186460114	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	-	186460114	TT	-	186460113	7	5	203	1	0	1	0	1	0	0	0	0	8434	1609	56	0	1966	0	KNG1	3	186460113	Frame_Shift_Del	DEL	TT	TCGA-B0-5713-01A-11D-1669-08	7508036	186460113	11562317	21	12803											
BCL6	604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	187447399	187447399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	187447399	A	T	187447399	3	4	203	1	0	0	0	0	1	0	0	0	1376	333	12	5	1350	5	BCL6	3	187447399	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	987286	187447399	10575031	22	12804											
THAP9	79725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83838698	83838698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	83838698	G	A	83838698	3	1	203	1	0	0	0	0	1	0	0	0	15863	1145	40	1	1351	1	THAP9	4	83838698	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08		83838698	107315578	23	12805											
MAPK10	5602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87023072	87023072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	87023072	A	G	87023072	3	3	203	1	0	0	0	0	1	0	0	0	9279	304	11	3	892	3	MAPK10	4	87023072	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	3184374	87023072	104131204	24	12806											
TLL1	7092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	166986847	166986847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	166986847	G	C	166986847	3	2	203	1	0	0	0	0	1	0	0	0	15957	1290	45	4	2082	4	TLL1	4	166986847	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	79963775	166986847	24167429	25	12807											
FAT1	2195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	187549319	187549319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	187549319	G	C	187549319	3	2	203	1	0	0	0	0	1	0	0	0	5696	1059	37	4	9043	4	FAT1	4	187549319	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	20562472	187549319	3604957	26	12808											
SLCO4C1	353189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	101597654	101597654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	101597654	A	G	101597654	3	3	203	1	0	0	0	0	1	0	0	0	14743	372	13	3	1227	3	SLCO4C1	5	101597654	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08		101597654	79317606	27	12809											
TCOF1	6949	hgsc.bcm.edu;ucsc.edu	37	5	149771631	149771632	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	149771632	-	C	149771631	7	5	203	1	0	1	1	0	0	0	0	0	15720	159	6	0	3513	0	TCOF1	5	149771631	Frame_Shift_Ins	INS	-	TCGA-B0-5713-01A-11D-1669-08	48173977	149771631	31143629	28	12810											
RNF145	153830	hgsc.bcm.edu;ucsc.edu	37	5	158601127	158601128	+	Frame_Shift_Ins	INS	-	-	GGACATT	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	GGACATT	158601128	-	GGACATT	158601127	7	5	203	1	0	1	1	0	0	0	0	0	13460	991	35	0	1354	0	RNF145	5	158601127	Frame_Shift_Ins	INS	-	TCGA-B0-5713-01A-11D-1669-08	8829496	158601127	22314133	29	12811											
RANBP17	64901	broad.mit.edu;hgsc.bcm.edu	37	5	170336745	170336745	+	Silent	SNP	G	G	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	170336745	G	T	170336745	2	4	203	1	0	0	0	0	0	0	0	1	13040	1306	46	4		4	RANBP17	5	170336745	Silent	SNP	G	TCGA-B0-5713-01A-11D-1669-08	11735618	170336745	10578515	30	12812											
RAB24	53917	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176728925	176728925	+	Splice_Site	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	176728925	C	T	176728925	5	4	203	1	0	0	0	0	0	0	1	0	12924	521	18	2	71	2	RAB24	5	176728925	Splice_Site	SNP	C	TCGA-B0-5713-01A-11D-1669-08	6392180	176728925	4186335	31	12813											
HNRNPH1	3187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179050064	179050064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	179050064	G	A	179050064	3	1	203	1	0	0	0	0	1	0	0	0	7273	1203	42	2	1326	2	HNRNPH1	5	179050064	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	2321139	179050064	1865196	32	12814											
CUL7	9820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43017376	43017376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	43017376	C	T	43017376	3	4	203	1	0	0	0	0	1	0	0	0	4062	835	29	2	3582	2	CUL7	6	43017376	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08		43017376	128097691	33	12815											
CRIP3	401262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43276136	43276136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	43276136	T	C	43276136	3	2	203	1	0	0	0	0	1	0	0	0	3878	1551	54	3	587	3	CRIP3	6	43276136	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	258760	43276136	127838931	34	12816											
PAQR8	85315	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	52268836	52268836	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	52268836	T	A	52268836	4	1	203	1	0	0	0	0	0	1	0	0	11448	1702	59	5	827	5	PAQR8	6	52268836	Nonsense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	8992700	52268836	118846231	35	12817											
FAM83B	222584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	54735119	54735119	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	54735119	G	C	54735119	3	2	203	1	0	0	0	0	1	0	0	0	5641	991	35	4	77	4	FAM83B	6	54735119	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	2466283	54735119	116379948	36	12818											
UBE2J1	51465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90039627	90039627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	90039627	G	T	90039627	3	4	203	1	0	0	0	0	1	0	0	0	16872	1000	35	4	232	4	UBE2J1	6	90039627	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	35304508	90039627	81075440	37	12819											
MARCKS	4082	broad.mit.edu;hgsc.bcm.edu	37	6	114178975	114178975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	114178975	G	C	114178975	3	2	203	1	0	0	0	0	1	0	0	0	9316	1194	42	4	56	4	MARCKS	6	114178975	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	24139348	114178975	56936092	38	12820											
CHST12	55501	hgsc.bcm.edu;ucsc.edu	37	7	2473500	2473500	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	-	2473500	A	-	2473500	7	5	203	1	0	1	0	1	0	0	0	0	3402	246	9	0	1228	0	CHST12	7	2473500	Frame_Shift_Del	DEL	A	TCGA-B0-5713-01A-11D-1669-08		2473500	156665163	39	12821											
EGFR	1956	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	55249116	55249116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	55249116	A	G	55249116	3	3	203	1	0	0	0	0	1	0	0	0	4969	159	6	3	2756	3	EGFR	7	55249116	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	52775616	55249116	103889547	40	12822											
ACN9	57001	hgsc.bcm.edu;ucsc.edu	37	7	96747041	96747046	+	In_Frame_Del	DEL	GGGGCG	GGGGCG	-	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	GGGGCG	GGGGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	-	96747046	GGGGCG	-	96747041	7	5	203	1	0	1	0	1	0	0	0	0	145	1103	39	0	8	0	ACN9	7	96747041	In_Frame_Del	DEL	GGGGCG	TCGA-B0-5713-01A-11D-1669-08	41497925	96747041	62391622	41	12823											
ZNF786	136051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	148769510	148769510	+	Silent	SNP	A	A	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	148769510	A	T	148769510	2	4	203	1	0	0	0	0	0	0	0	1	18170	175	7	5		5	ZNF786	7	148769510	Silent	SNP	A	TCGA-B0-5713-01A-11D-1669-08	52022469	148769510	10369153	42	12824											
TNKS	8658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	9588524	9588524	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	9588524	A	C	9588524	3	2	203	1	0	0	0	0	1	0	0	0	16331	333	12	5	2180	5	TNKS	8	9588524	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08		9588524	136775498	43	12825											
PXDNL	137902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	52370154	52370154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	52370154	T	C	52370154	3	2	203	1	0	0	0	0	1	0	0	0	12861	1588	55	3	3565	3	PXDNL	8	52370154	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	42781630	52370154	93993868	44	12826											
NSMAF	8439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	59506790	59506790	+	Splice_Site	SNP	C	C	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	59506790	C	G	59506790	5	3	203	1	0	0	0	0	0	0	1	0	10681	521	18	4	837	4	NSMAF	8	59506790	Splice_Site	SNP	C	TCGA-B0-5713-01A-11D-1669-08	7136636	59506790	86857232	45	12827											
COPS5	10987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67970384	67970384	+	Silent	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	67970384	A	G	67970384	2	3	203	1	0	0	0	0	0	0	0	1	3738	1	1	3		3	COPS5	8	67970384	Silent	SNP	A	TCGA-B0-5713-01A-11D-1669-08	8463594	67970384	78393638	46	12828											
LRRCC1	85444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	86022019	86022019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	86022019	G	T	86022019	3	4	203	1	0	0	0	0	1	0	0	0	9033	1281	45	4	300	4	LRRCC1	8	86022019	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	18051635	86022019	60342003	47	12829											
LRP12	29967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	105503616	105503616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	105503616	G	A	105503616	3	1	203	1	0	0	0	0	1	0	0	0	8961	1294	45	2	718	2	LRP12	8	105503616	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	19481597	105503616	40860406	48	12830											
NOL6	65083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	33470170	33470170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	33470170	A	G	33470170	3	3	203	1	0	0	0	0	1	0	0	0	10532	304	11	3	3134	3	NOL6	9	33470170	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08		33470170	107743261	49	12831											
TPM2	7169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35684288	35684288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	35684288	C	T	35684288	3	4	203	1	0	0	0	0	1	0	0	0	16418	893	31	1	222	1	TPM2	9	35684288	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	2214118	35684288	105529143	50	12832											
SVEP1	79987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	113170849	113170849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	113170849	A	T	113170849	3	4	203	1	0	0	0	0	1	0	0	0	15432	43	2	5	3728	5	SVEP1	9	113170849	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	77486561	113170849	28042582	51	12833											
CCDC109A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	74619047	74619047	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	74619047	T	G	74619047	3	3	203	1	0	0	0	0	1	0	0	0	2746	1838	64	5	343	5	CCDC109A	10	74619047	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08		74619047	60915700	52	12834											
C10orf79	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	105922142	105922142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	105922142	A	C	105922142	3	2	203	1	0	0	0	0	1	0	0	0	1620	101	4	5	1787	5	C10orf79	10	105922142	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	31303095	105922142	29612605	53	12835											
CDHR5	53841	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	621602	621602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	621602	T	C	621602	3	2	203	1	0	0	0	0	1	0	0	0	3124	1609	56	3	2114	3	CDHR5	11	621602	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08		621602	134384914	54	12836											
FGF3	2248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	69631129	69631129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	69631129	G	A	69631129	3	1	203	1	0	0	0	0	1	0	0	0	5860	1086	38	1	444	1	FGF3	11	69631129	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	69009527	69631129	65375387	55	12837											
REXO2	25996	broad.mit.edu;hgsc.bcm.edu	37	11	114314631	114314631	+	Silent	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	114314631	T	C	114314631	2	2	203	1	0	0	0	0	0	0	0	1	13255	1490	52	3		3	REXO2	11	114314631	Silent	SNP	T	TCGA-B0-5713-01A-11D-1669-08	44683502	114314631	20691885	56	12838											
CACNA2D4	93589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	2027490	2027490	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	-	2027490	G	-	2027490	7	5	203	1	0	1	0	1	0	0	0	0	2553	987	35	0	3415	0	CACNA2D4	12	2027490	Frame_Shift_Del	DEL	G	TCGA-B0-5713-01A-11D-1669-08		2027490	131824405	57	12839											
TAS2R42	353164	broad.mit.edu;hgsc.bcm.edu	37	12	11339532	11339532	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	11339532	T	G	11339532	3	3	203	1	0	0	0	0	1	0	0	0	15592	1490	52	5	936	5	TAS2R42	12	11339532	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	9312042	11339532	122512363	58	12840											
ESPL1	9700	broad.mit.edu	37	12	53670456	53670456	+	Silent	SNP	C	T	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	53670456	T	T	53670456	2	4	203	1	0	0	0	0	0	0	0	1	5255	796	28	2		2	ESPL1	12	53670456	Silent	SNP	C	TCGA-B0-5713-01A-11D-1669-08	42330924	53670456	80181439	59	12841											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53685569	53685569	+	Silent	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	53685569	C	T	53685569	2	4	203	1	0	0	0	0	0	0	0	1	5255	842	30	2		2	ESPL1	12	53685569	Silent	SNP	C	TCGA-B0-5713-01A-11D-1669-08	15113	53685569	80166326	60	12842											
FGD6	55785	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	95546724	95546724	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	95546724	C	A	95546724	4	1	203	1	0	0	0	0	0	1	0	0	5844	864	30	4	1732	4	FGD6	12	95546724	Nonsense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	41861155	95546724	38305171	61	12843											
STAB2	55576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104056757	104056757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	104056757	C	A	104056757	3	1	203	1	0	0	0	0	1	0	0	0	15250	478	17	4	2073	4	STAB2	12	104056757	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	8510033	104056757	29795138	62	12844											
HSP90B1	7184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104341195	104341195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	104341195	A	C	104341195	3	2	203	1	0	0	0	0	1	0	0	0	7410	246	9	5	2435	5	HSP90B1	12	104341195	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	284438	104341195	29510700	63	12845											
GPC5	2262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	92346002	92346002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	92346002	T	C	92346002	3	2	203	1	0	0	0	0	1	0	0	0	6608	1435	50	3	897	3	GPC5	13	92346002	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08		92346002	22823876	64	12846											
TM9SF2	9375	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	100207857	100207857	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	100207857	T	A	100207857	3	1	203	1	0	0	0	0	1	0	0	0	15990	1783	62	5	1766	5	TM9SF2	13	100207857	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	7861855	100207857	14962021	65	12847											
OXA1L	5018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23239464	23239464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	23239464	C	G	23239464	3	3	203	1	0	0	0	0	1	0	0	0	11335	507	18	4	844	4	OXA1L	14	23239464	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08		23239464	84110076	66	12848											
IRF9	10379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24633841	24633841	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	24633841	C	G	24633841	3	3	203	1	0	0	0	0	1	0	0	0	7844	507	18	4	690	4	IRF9	14	24633841	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	1394377	24633841	82715699	67	12849											
SYT16	83851	hgsc.bcm.edu;ucsc.edu	37	14	62462755	62462755	+	Silent	SNP	G	G	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	62462755	G	A	62462755	2	1	203	1	0	0	0	0	0	0	0	1	15484	1132	40	1		1	SYT16	14	62462755	Silent	SNP	G	TCGA-B0-5713-01A-11D-1669-08	37828914	62462755	44886785	68	12850											
SIPA1L1	26037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	72055449	72055449	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	72055449	A	T	72055449	3	4	203	1	0	0	0	0	1	0	0	0	14342	14	1	5	862	5	SIPA1L1	14	72055449	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	9592694	72055449	35294091	69	12851											
C14orf43	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74205375	74205375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	74205375	A	T	74205375	3	4	203	1	0	0	0	0	1	0	0	0	1776	420	15	5	1844	5	C14orf43	14	74205375	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	2149926	74205375	33144165	70	12852											
OTUB2	78990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94511094	94511094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	94511094	G	A	94511094	3	1	203	1	0	0	0	0	1	0	0	0	11319	1291	45	2	484	2	OTUB2	14	94511094	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	20305719	94511094	12838446	71	12853											
SERPINA12	145264	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94964436	94964436	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	94964436	T	A	94964436	3	1	203	1	0	0	0	0	1	0	0	0	14102	1580	55	5	961	5	SERPINA12	14	94964436	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	453342	94964436	12385104	72	12854											
BCL11B	64919	broad.mit.edu;hgsc.bcm.edu	37	14	99641322	99641322	+	Silent	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	99641322	C	T	99641322	2	4	203	1	0	0	0	0	0	0	0	1	1364	796	28	2		2	BCL11B	14	99641322	Silent	SNP	C	TCGA-B0-5713-01A-11D-1669-08	4676886	99641322	7708218	73	12855											
SPG21	51324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65273294	65273294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	65273294	G	T	65273294	3	4	203	1	0	0	0	0	1	0	0	0	15055	1174	41	4	821	4	SPG21	15	65273294	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08		65273294	37258098	74	12856											
SPESP1	246777	hgsc.bcm.edu;ucsc.edu	37	15	69238350	69238350	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	-	69238350	A	-	69238350	7	5	203	1	0	1	0	1	0	0	0	0	15052	117	5	0	483	0	SPESP1	15	69238350	Frame_Shift_Del	DEL	A	TCGA-B0-5713-01A-11D-1669-08	3965056	69238350	33293042	75	12857											
HCN4	10021	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	73616205	73616205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	73616205	C	A	73616205	3	1	203	1	0	0	0	0	1	0	0	0	7006	796	28	4	1386	4	HCN4	15	73616205	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	4377855	73616205	28915187	76	12858											
RAB11FIP3	9727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	476674	476674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	476674	G	T	476674	3	4	203	1	0	0	0	0	1	0	0	0	12908	1087	38	4	670	4	RAB11FIP3	16	476674	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08		476674	89878079	77	12859											
CORO7	79585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4408461	4408461	+	Silent	SNP	C	C	T	rs151072609	alternate_allele	TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	4408461	C	T	4408461	2	4	203	1	0	0	0	0	0	0	0	1	3761	639	23	1		1	CORO7	16	4408461	Silent	SNP	C	TCGA-B0-5713-01A-11D-1669-08	3931787	4408461	85946292	78	12860											
TMC5	79838	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	19475156	19475156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	19475156	A	G	19475156	3	3	203	1	0	0	0	0	1	0	0	0	16000	188	7	3	1631	3	TMC5	16	19475156	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	15066695	19475156	70879597	79	12861											
ITGAL	3683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30505581	30505581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	30505581	C	T	30505581	3	4	203	1	0	0	0	0	1	0	0	0	7893	739	26	2	1308	2	ITGAL	16	30505581	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	11030425	30505581	59849172	80	12862											
ACD	65057	broad.mit.edu;ucsc.edu	37	16	67694268	67694269	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	67694269	G	G	67694268	7	5	203	1	0	1	1	0	0	0	0	0	135	291	11	0	1568	0	ACD	16	67694268	Frame_Shift_Ins	INS	-	TCGA-B0-5713-01A-11D-1669-08	37188687	67694268	22660485	81	12863											
ZFP90	146198	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68598499	68598499	+	Silent	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	68598499	T	C	68598499	2	2	203	1	0	0	0	0	0	0	0	1	17666	1403	49	3		3	ZFP90	16	68598499	Silent	SNP	T	TCGA-B0-5713-01A-11D-1669-08	904231	68598499	21756254	82	12864											
MLYCD	23417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	83949048	83949048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	83949048	A	G	83949048	3	3	203	1	0	0	0	0	1	0	0	0	9645	188	7	3	1454	3	MLYCD	16	83949048	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	15350549	83949048	6405705	83	12865											
RPH3AL	9501	hgsc.bcm.edu;ucsc.edu	37	17	171101	171102	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	CT	171102	-	CT	171101	7	5	203	1	0	1	1	0	0	0	0	0	13565	622	22	0	792	0	RPH3AL	17	171101	Frame_Shift_Ins	INS	-	TCGA-B0-5713-01A-11D-1669-08		171101	81024109	84	12866											
EFTUD2	9343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42953390	42953390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	42953390	C	A	42953390	3	1	203	1	0	0	0	0	1	0	0	0	4963	826	29	4	2213	4	EFTUD2	17	42953390	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	42782289	42953390	38241820	85	12867											
C17orf46	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	43332848	43332848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	43332848	G	T	43332848	3	4	203	1	0	0	0	0	1	0	0	0	1859	1348	47	4	461	4	C17orf46	17	43332848	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	379458	43332848	37862362	86	12868											
CCDC45	0	broad.mit.edu;hgsc.bcm.edu	37	17	62512942	62512942	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	62512942	G	C	62512942	3	2	203	1	0	0	0	0	1	0	0	0	2818	1348	47	4	487	4	CCDC45	17	62512942	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	19180094	62512942	18682268	87	12869											
SDK2	54549	broad.mit.edu	37	17	71429919	71429919	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	71429919	A	A	71429919	3	1	203	1	0	0	0	0	1	0	0	0	13982	797	28	4	5398	4	SDK2	17	71429919	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	8916977	71429919	9765291	88	12870											
DNAH17	8632	broad.mit.edu;hgsc.bcm.edu	37	17	76535832	76535832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	76535832	T	C	76535832	3	2	203	1	0	0	0	0	1	0	0	0	4603	1725	60	3	10981	3	DNAH17	17	76535832	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	5105913	76535832	4659378	89	12871											
SLC26A11	284129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78196524	78196524	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	78196524	T	G	78196524	3	3	203	1	0	0	0	0	1	0	0	0	14529	1580	55	5	311	5	SLC26A11	17	78196524	Missense_Mutation	SNP	T	TCGA-B0-5713-01A-11D-1669-08	1660692	78196524	2998686	90	12872											
ATP8B1	5205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	55399034	55399034	+	Silent	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	55399034	A	G	55399034	2	3	203	1	0	0	0	0	0	0	0	1	1194	388	14	3		3	ATP8B1	18	55399034	Silent	SNP	A	TCGA-B0-5713-01A-11D-1669-08		55399034	22678214	91	12873											
TCF3	6929	broad.mit.edu	37	19	1625673	1625673	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	1625673	T	T	1625673	3	4	203	1	0	0	0	0	1	0	0	0	15706	797	28	2	1846	2	TCF3	19	1625673	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08		1625673	57503310	92	12874											
ZFR2	23217	broad.mit.edu	37	19	3831667	3831667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	3831667	T	T	3831667	3	4	203	1	0	0	0	0	1	0	0	0	17672	768	27	1	2294	1	ZFR2	19	3831667	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	2205994	3831667	55297316	93	12875											
PNPLA6	10908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7614966	7614966	+	Silent	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	7614966	C	T	7614966	2	4	203	1	0	0	0	0	0	0	0	1	12176	668	24	2		2	PNPLA6	19	7614966	Silent	SNP	C	TCGA-B0-5713-01A-11D-1669-08	3783299	7614966	51514017	94	12876											
ANGPTL6	83854	broad.mit.edu;hgsc.bcm.edu	37	19	10206762	10206762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	C	10206762	G	C	10206762	3	2	203	1	0	0	0	0	1	0	0	0	618	962	34	4	954	4	ANGPTL6	19	10206762	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08	2591796	10206762	48922221	95	12877											
KLK6	5653	broad.mit.edu	37	19	51462529	51462529	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	51462529	T	T	51462529	3	4	203	1	0	0	0	0	1	0	0	0	8415	739	26	2	112	2	KLK6	19	51462529	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	41255767	51462529	7666454	96	12878											
ZNF761	388561	hgsc.bcm.edu	37	19	53958187	53958187	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	-	53958187	A	-	53958187	7	5	203	1	0	1	0	1	0	0	0	0	18148	117	5	0	437	0	ZNF761	19	53958187	Frame_Shift_Del	DEL	A	TCGA-B0-5713-01A-11D-1669-08	2495658	53958187	5170796	97	12879											
SNRPB	6628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2442418	2442418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	2442418	C	T	2442418	3	4	203	1	0	0	0	0	1	0	0	0	14874	768	27	1	19	1	SNRPB	20	2442418	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08		2442418	60583102	98	12880											
PRNP	5621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	4680528	4680528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	4680528	A	G	4680528	3	3	203	1	0	0	0	0	1	0	0	0	12554	246	9	3	664	3	PRNP	20	4680528	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	2238110	4680528	58344992	99	12881											
EP300	2033	broad.mit.edu;hgsc.bcm.edu	37	22	41513594	41513594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	41513594	C	A	41513594	3	1	203	1	0	0	0	0	1	0	0	0	5150	477	17	4	504	4	EP300	22	41513594	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08		41513594	9790972	100	12882											
MAGEB10	139422	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	27840420	27840420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	A	27840420	G	A	27840420	3	1	203	1	0	0	0	0	1	0	0	0	9180	1116	39	1	999	1	MAGEB10	23	27840420	Missense_Mutation	SNP	G	TCGA-B0-5713-01A-11D-1669-08		27840420	127430140	101	12883											
GPKOW	27238	broad.mit.edu;ucsc.edu	37	X	48979947	48979947	+	Silent	SNP	A	T	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	48979947	T	T	48979947	2	4	203	1	0	0	0	0	0	0	0	1	6620	291	11	5		5	GPKOW	23	48979947	Silent	SNP	A	TCGA-B0-5713-01A-11D-1669-08	21139527	48979947	106290613	102	12884											
ATRX	546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	76939124	76939124	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	G	76939124	C	G	76939124	3	3	203	1	0	0	0	0	1	0	0	0	1208	565	20	4	5962	4	ATRX	23	76939124	Missense_Mutation	SNP	C	TCGA-B0-5713-01A-11D-1669-08	27959177	76939124	78331436	103	12885											
ATP11C	286410	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	138827926	138827926	+	Silent	SNP	C	C	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	138827926	C	T	138827926	2	4	203	1	0	0	0	0	0	0	0	1	1121	842	30	2		2	ATP11C	23	138827926	Silent	SNP	C	TCGA-B0-5713-01A-11D-1669-08	61888802	138827926	16442634	104	12886											
ZNF185	7739	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	152132417	152132417	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B0-5713-01A-11D-1669-08	TCGA-B0-5713-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f35dbf4-3223-4550-951b-1409a30ece68	befd76b7-c750-45f1-b5fd-a132ad345ac2	T	152132417	A	T	152132417	3	4	203	1	0	0	0	0	1	0	0	0	17764	391	14	5	1953	5	ZNF185	23	152132417	Missense_Mutation	SNP	A	TCGA-B0-5713-01A-11D-1669-08	13304491	152132417	3138143	105	12887											
UBE4B	10277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10163061	10163061	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	10163061	A	C	10163061	3	2	204	1	0	0	0	0	1	0	0	0	16895	72	3	5	509	5	UBE4B	1	10163061	Missense_Mutation	SNP	A	TCGA-B0-5812-01A-11D-1669-08		10163061	239087560	1	12888											
NUP133	55746	broad.mit.edu;hgsc.bcm.edu	37	1	229643913	229643913	+	Silent	SNP	C	C	G	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	G	229643913	C	G	229643913	2	3	204	1	0	0	0	0	0	0	0	1	10761	755	27	4		4	NUP133	1	229643913	Silent	SNP	C	TCGA-B0-5812-01A-11D-1669-08	219480852	229643913	19606708	2	12889											
VWA3B	200403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	98804531	98804531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	G	98804531	A	G	98804531	3	3	204	1	0	0	0	0	1	0	0	0	17253	131	5	3	1439	3	VWA3B	2	98804531	Missense_Mutation	SNP	A	TCGA-B0-5812-01A-11D-1669-08		98804531	144394842	3	12890											
NCKAP5	344148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	133539879	133539879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	133539879	G	T	133539879	3	4	204	1	0	0	0	0	1	0	0	0	10230	1000	35	4	1252	4	NCKAP5	2	133539879	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	34735348	133539879	109659494	4	12891											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141812722	141812722	+	Silent	SNP	A	A	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	141812722	A	T	141812722	2	4	204	1	0	0	0	0	0	0	0	1	8962	175	7	5		5	LRP1B	2	141812722	Silent	SNP	A	TCGA-B0-5812-01A-11D-1669-08	8272843	141812722	101386651	5	12892											
ALPP	250	broad.mit.edu;hgsc.bcm.edu	37	2	233245025	233245025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	233245025	C	T	233245025	3	4	204	1	0	0	0	0	1	0	0	0	548	768	27	1	809	1	ALPP	2	233245025	Missense_Mutation	SNP	C	TCGA-B0-5812-01A-11D-1669-08	91432303	233245025	9954348	6	12893											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188290	10188290	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	10188290	C	T	10188290	4	4	204	1	0	0	0	0	0	1	0	0	17174	479	17	2	439	2	VHL	3	10188290	Nonsense_Mutation	SNP	C	TCGA-B0-5812-01A-11D-1669-08		10188290	187834140	7	12894											
NLGN1	22871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	173998403	173998403	+	Silent	SNP	T	T	G	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	G	173998403	T	G	173998403	2	3	204	1	0	0	0	0	0	0	0	1	10468	1741	61	5		5	NLGN1	3	173998403	Silent	SNP	T	TCGA-B0-5812-01A-11D-1669-08	163810113	173998403	24024027	8	12895											
MCF2L2	23101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	182897463	182897463	+	Silent	SNP	C	C	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	182897463	C	T	182897463	2	4	204	1	0	0	0	0	0	0	0	1	9387	564	20	2		2	MCF2L2	3	182897463	Silent	SNP	C	TCGA-B0-5812-01A-11D-1669-08	8899060	182897463	15124967	9	12896											
FIP1L1	81608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	54265975	54265975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	54265975	T	C	54265975	3	2	204	1	0	0	0	0	1	0	0	0	5903	1783	62	3	822	3	FIP1L1	4	54265975	Missense_Mutation	SNP	T	TCGA-B0-5812-01A-11D-1669-08		54265975	136888301	10	12897											
C5orf42	65250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	37120329	37120329	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	37120329	G	C	37120329	3	2	204	1	0	0	0	0	1	0	0	0	2303	1000	35	4	472	4	C5orf42	5	37120329	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08		37120329	143794931	11	12898											
APC	324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	112170717	112170717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	112170717	G	A	112170717	3	1	204	1	0	0	0	0	1	0	0	0	763	1290	45	2	1867	2	APC	5	112170717	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	75050388	112170717	68744543	12	12899											
CEP120	153241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	122722335	122722335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	122722335	G	C	122722335	3	2	204	1	0	0	0	0	1	0	0	0	3248	1319	46	4	1547	4	CEP120	5	122722335	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	10551618	122722335	58192925	13	12900	161	2									
CEP120	153241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	122722336	122722336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	122722336	C	A	122722336	3	1	204	1	0	0	0	0	1	0	0	0	3248	710	25	4	1548	4	CEP120	5	122722336	Missense_Mutation	SNP	C	TCGA-B0-5812-01A-11D-1669-08	1	122722336	58192924	14	12901	161	2									
TUBB2B	347733	broad.mit.edu	37	6	3227737	3227737	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	3227737	C	C	3227737	3	2	204	1	0	0	0	0	1	0	0	0	16767	1725	60	3	1312	3	TUBB2B	6	3227737	Missense_Mutation	SNP	T	TCGA-B0-5812-01A-11D-1669-08		3227737	167887330	15	12902											
LRFN2	57497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	40400076	40400076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	40400076	G	C	40400076	3	2	204	1	0	0	0	0	1	0	0	0	8945	1136	40	4	1600	4	LRFN2	6	40400076	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	37172339	40400076	130714991	16	12903											
PKHD1	5314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	51656133	51656133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	51656133	T	C	51656133	3	2	204	1	0	0	0	0	1	0	0	0	11978	1821	63	3	3982	3	PKHD1	6	51656133	Missense_Mutation	SNP	T	TCGA-B0-5812-01A-11D-1669-08	11256057	51656133	119458934	17	12904											
LAMB1	3912	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107605113	107605113	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	107605113	G	A	107605113	4	1	204	1	0	0	0	0	0	1	0	0	8617	1357	47	2	3862	2	LAMB1	7	107605113	Nonsense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08		107605113	51533550	18	12905											
SSPO	23145	broad.mit.edu	37	7	149486279	149486279	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	149486279	A	A	149486279	3	1	204	1	0	0	0	0	1	0	0	0	15201	1232	43	2	4369	2	SSPO	7	149486279	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	41881166	149486279	9652384	19	12906											
ERICH1	157697	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	623548	623548	+	Silent	SNP	G	G	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	623548	G	A	623548	2	1	204	1	0	0	0	0	0	0	0	1	5232	1136	40	1		1	ERICH1	8	623548	Silent	SNP	G	TCGA-B0-5812-01A-11D-1669-08		623548	145740474	20	12907											
MSR1	4481	broad.mit.edu;hgsc.bcm.edu	37	8	16021600	16021600	+	Missense_Mutation	SNP	G	G	T	rs143967440	alternate_allele	TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	16021600	G	T	16021600	3	4	204	1	0	0	0	0	1	0	0	0	9893	1261	44	4	636	4	MSR1	8	16021600	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	15398052	16021600	130342422	21	12908											
RIMS2	9699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	104709441	104709441	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	104709441	G	C	104709441	3	2	204	1	0	0	0	0	1	0	0	0	13381	1290	45	4	310	4	RIMS2	8	104709441	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	88687841	104709441	41654581	22	12909											
ALDOB	229	hgsc.bcm.edu;ucsc.edu	37	9	104190767	104190770	+	Frame_Shift_Del	DEL	TTTG	TTTG	-	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	TTTG	TTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	-	104190770	TTTG	-	104190767	7	5	204	1	0	1	0	1	0	0	0	0	508	1606	56	0	755	0	ALDOB	9	104190767	Frame_Shift_Del	DEL	TTTG	TCGA-B0-5812-01A-11D-1669-08		104190767	37022664	23	12910											
LAMC3	10319	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133942552	133942552	+	Silent	SNP	C	C	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	133942552	C	T	133942552	2	4	204	1	0	0	0	0	0	0	0	1	8623	547	19	1		1	LAMC3	9	133942552	Silent	SNP	C	TCGA-B0-5812-01A-11D-1669-08	29751785	133942552	7270879	24	12911											
C9orf140	0	broad.mit.edu	37	9	139959180	139959180	+	Silent	SNP	A	G	G	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	G	139959180	G	G	139959180	2	3	204	1	0	0	0	0	0	0	0	1	2462	358	13	3		3	C9orf140	9	139959180	Silent	SNP	A	TCGA-B0-5812-01A-11D-1669-08	6016628	139959180	1254251	25	12912											
SLC39A12	221074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	18250701	18250701	+	Silent	SNP	G	G	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	18250701	G	A	18250701	2	1	204	1	0	0	0	0	0	0	0	1	14628	1194	42	2		2	SLC39A12	10	18250701	Silent	SNP	G	TCGA-B0-5812-01A-11D-1669-08		18250701	117284046	26	12913											
MADD	8567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47306055	47306055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	47306055	G	A	47306055	3	1	204	1	0	0	0	0	1	0	0	0	9159	1087	38	1	2138	1	MADD	11	47306055	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08		47306055	87700461	27	12914											
GRM5	2915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	88330476	88330476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	G	88330476	T	G	88330476	3	3	204	1	0	0	0	0	1	0	0	0	6807	1435	50	5	2219	5	GRM5	11	88330476	Missense_Mutation	SNP	T	TCGA-B0-5812-01A-11D-1669-08	41024421	88330476	46676040	28	12915											
HYOU1	10525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118925901	118925901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	118925901	T	A	118925901	3	1	204	1	0	0	0	0	1	0	0	0	7477	1580	55	5	2672	5	HYOU1	11	118925901	Missense_Mutation	SNP	T	TCGA-B0-5812-01A-11D-1669-08	30595425	118925901	16080615	29	12916											
ST8SIA1	6489	hgsc.bcm.edu	37	12	22354703	22354703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	22354703	C	T	22354703	3	4	204	1	0	0	0	0	1	0	0	0	15243	507	18	2	220	2	ST8SIA1	12	22354703	Missense_Mutation	SNP	C	TCGA-B0-5812-01A-11D-1669-08		22354703	111497192	30	12917											
SLC41A2	84102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	105282811	105282811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	G	105282811	C	G	105282811	3	3	204	1	0	0	0	0	1	0	0	0	14643	637	22	4	869	4	SLC41A2	12	105282811	Missense_Mutation	SNP	C	TCGA-B0-5812-01A-11D-1669-08	82928108	105282811	28569084	31	12918											
MLEC	9761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121132708	121132708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	121132708	G	A	121132708	3	1	204	1	0	0	0	0	1	0	0	0	9620	1058	37	1	506	1	MLEC	12	121132708	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	15849897	121132708	12719187	32	12919											
EDNRB	1910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	78472463	78472463	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	78472463	A	C	78472463	3	2	204	1	0	0	0	0	1	0	0	0	4922	69	3	5	252	5	EDNRB	13	78472463	Missense_Mutation	SNP	A	TCGA-B0-5812-01A-11D-1669-08		78472463	36697415	33	12920											
ARHGEF7	8874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	111932908	111932908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	111932908	G	T	111932908	3	4	204	1	0	0	0	0	1	0	0	0	911	1029	36	4	1734	4	ARHGEF7	13	111932908	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	33460445	111932908	3236970	34	12921											
EML1	2009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	100375765	100375765	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	100375765	C	A	100375765	4	1	204	1	0	0	0	0	0	1	0	0	5098	576	20	4	1291	4	EML1	14	100375765	Nonsense_Mutation	SNP	C	TCGA-B0-5812-01A-11D-1669-08		100375765	6973775	35	12922											
BAHD1	22893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40758186	40758186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	40758186	A	C	40758186	3	2	204	1	0	0	0	0	1	0	0	0	1297	15	1	5	2222	5	BAHD1	15	40758186	Missense_Mutation	SNP	A	TCGA-B0-5812-01A-11D-1669-08		40758186	61773206	36	12923											
TGM5	9333	broad.mit.edu;hgsc.bcm.edu	37	15	43533161	43533161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	43533161	C	A	43533161	3	1	204	1	0	0	0	0	1	0	0	0	15845	536	19	4	1300	4	TGM5	15	43533161	Missense_Mutation	SNP	C	TCGA-B0-5812-01A-11D-1669-08	2774975	43533161	58998231	37	12924											
STAC2	342667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37369246	37369246	+	Splice_Site	SNP	A	A	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	37369246	A	C	37369246	5	2	204	1	0	0	0	0	0	0	1	0	15252	173	6	5	110	5	STAC2	17	37369246	Splice_Site	SNP	A	TCGA-B0-5812-01A-11D-1669-08		37369246	43825964	38	12925											
SLC16A5	9121	broad.mit.edu;hgsc.bcm.edu	37	17	73096901	73096901	+	Silent	SNP	A	A	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	73096901	A	T	73096901	2	4	204	1	0	0	0	0	0	0	0	1	14424	146	6	5		5	SLC16A5	17	73096901	Silent	SNP	A	TCGA-B0-5812-01A-11D-1669-08	35727655	73096901	8098309	39	12926											
ProSAPiP1	0	broad.mit.edu;hgsc.bcm.edu	37	20	3146916	3146916	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	3146916	T	A	3146916	3	1	204	1	0	0	0	0	1	0	0	0	12883	1812	63	5	1479	5	ProSAPiP1	20	3146916	Missense_Mutation	SNP	T	TCGA-B0-5812-01A-11D-1669-08		3146916	59878604	40	12927											
NCAM2	4685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	22664427	22664427	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	C	22664427	G	C	22664427	3	2	204	1	0	0	0	0	1	0	0	0	10210	1116	39	4	503	4	NCAM2	21	22664427	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08		22664427	25465468	41	12928											
ADAMTS5	11096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	28296852	28296852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	28296852	G	T	28296852	3	4	204	1	0	0	0	0	1	0	0	0	269	1281	45	4	483	4	ADAMTS5	21	28296852	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08	5632425	28296852	19833043	42	12929											
TCN2	6948	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	31018990	31018990	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	A	31018990	T	A	31018990	4	1	204	1	0	0	0	0	0	1	0	0	15719	1764	61	5	1172	5	TCN2	22	31018990	Nonsense_Mutation	SNP	T	TCGA-B0-5812-01A-11D-1669-08		31018990	20285576	43	12930											
IGSF1	3547	broad.mit.edu	37	X	130409627	130409627	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5812-01A-11D-1669-08	TCGA-B0-5812-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6327ce2c-8a24-45b9-9577-7b7d7b603e68	d5b39631-2b9e-4aee-8943-b0c576dc3bd7	T	130409627	T	T	130409627	3	4	204	1	0	0	0	0	1	0	0	0	7603	1368	48	4	1021	4	IGSF1	23	130409627	Missense_Mutation	SNP	G	TCGA-B0-5812-01A-11D-1669-08		130409627	24860933	44	12931											
NBPF1	55672	broad.mit.edu	37	1	16907371	16907371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	16907371	C	T	16907371	3	4	205	1	0	0	0	0	1	0	0	0	10199	739	26	2	2020	2	NBPF1	1	16907371	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08		16907371	232343250	1	12932											
UBXN11	91544	bcgsc.ca	37	1	26608825	26608825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	26608825	T	C	26608825	3	2	205	1	0	0	0	0	1	0	0	0	16925	1580	55	3	38	3	UBXN11	1	26608825	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	9701454	26608825	222641796	2	12933											
ANGPTL3	27329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63066787	63066787	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	63066787	T	A	63066787	2	1	205	1	0	0	0	0	0	0	0	1	615	1493	52	5		5	ANGPTL3	1	63066787	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	36457962	63066787	186183834	3	12934											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145562384	145562384	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	145562384	G	C	145562384	3	2	205	1	0	0	0	0	1	0	0	0	664	1116	39	4	2110	4	ANKRD35	1	145562384	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	82495597	145562384	103688237	4	12935											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169094257	169094257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	169094257	T	G	169094257	3	3	205	1	0	0	0	0	1	0	0	0	1132	1464	51	5	372	5	ATP1B1	1	169094257	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	23531873	169094257	80156364	5	12936											
AGT	183	hgsc.bcm.edu;broad.mit.edu	37	1	230845905	230845905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	230845905	G	T	230845905	3	4	205	1	0	0	0	0	1	0	0	0	399	1261	44	4	781	4	AGT	1	230845905	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	61751648	230845905	18404716	6	12937											
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235386544	235386544	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	235386544	T	C	235386544	2	2	205	1	0	0	0	0	0	0	0	1	920	1422	50	3		3	ARID4B	1	235386544	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	4540639	235386544	13864077	7	12938											
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54135515	54135515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	54135515	T	C	54135515	3	2	205	1	0	0	0	0	1	0	0	0	12719	1464	51	3	2897	3	PSME4	2	54135515	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08		54135515	189063858	8	12939											
PCBP1	5093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70314950	70314950	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	70314950	A	G	70314950	2	3	205	1	0	0	0	0	0	0	0	1	11507	407	15	3		3	PCBP1	2	70314950	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	16179435	70314950	172884423	9	12940											
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166915109	166915109	+	Silent	SNP	C	C	T	rs121917959	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	166915109	C	T	166915109	2	4	205	1	0	0	0	0	0	0	0	1	13927	854	30	2		2	SCN1A	2	166915109	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	96600159	166915109	76284264	10	12941											
UBR3	130507	hgsc.bcm.edu;bcgsc.ca	37	2	170815017	170815017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	170815017	G	A	170815017	3	1	205	1	0	0	0	0	1	0	0	0	16915	1348	47	2	3709	2	UBR3	2	170815017	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3899908	170815017	72384356	11	12942											
ZNF385B	151126	ucsc.edu;bcgsc.ca	37	2	180308133	180308133	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	180308133	A	G	180308133	2	3	205	1	0	0	0	0	0	0	0	1	17889	291	11	3		3	ZNF385B	2	180308133	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	9493116	180308133	62891240	12	12943											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182765433	182765433	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	182765433	T	C	182765433	2	2	205	1	0	0	0	0	0	0	0	1	15195	1490	52	3		3	SSFA2	2	182765433	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	2457300	182765433	60433940	13	12944											
GLS	2744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	191797555	191797555	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	191797555	A	G	191797555	2	3	205	1	0	0	0	0	0	0	0	1	6470	464	16	3		3	GLS	2	191797555	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	9032122	191797555	51401818	14	12945											
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201478584	201478584	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	201478584	C	T	201478584	2	4	205	1	0	0	0	0	0	0	0	1	729	610	22	2		2	AOX1	2	201478584	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	9681029	201478584	41720789	15	12946											
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	227872134	227872134	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	227872134	C	T	227872134	2	4	205	1	0	0	0	0	0	0	0	1	3695	564	20	2		2	COL4A4	2	227872134	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	26393550	227872134	15327239	16	12947											
DNAJB3	414061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234652351	234652351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	234652351	G	A	234652351	3	1	205	1	0	0	0	0	1	0	0	0	4623	1087	38	1	229	1	DNAJB3	2	234652351	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	6780217	234652351	8547022	17	12948			1	20		2	2	22	N	G_A	9.225362e-05
DNAJB3	414061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234652372	234652372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	234652372	A	G	234652372	3	3	205	1	0	0	0	0	1	0	0	0	4623	333	12	3	250	3	DNAJB3	2	234652372	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	21	234652372	8547001	18	12949			1	20		2	2	22	N	G_A	9.225362e-05
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	235962373	235962373	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	-	235962373	C	-	235962373	7	5	205	1	0	1	0	1	0	0	0	0	14259	813	29	0	2819	0	SH3BP4	2	235962373	Frame_Shift_Del	DEL	C	TCGA-B1-5398-01A-02D-1589-08	1310001	235962373	7237000	19	12950											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238234213	238234213	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	238234213	A	T	238234213	2	4	205	1	0	0	0	0	0	0	0	1	3703	1	1	5		5	COL6A3	2	238234213	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	2271840	238234213	4965160	20	12951											
PER2	8864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239184526	239184526	+	Silent	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	239184526	A	C	239184526	2	2	205	1	0	0	0	0	0	0	0	1	11737	59	3	5		5	PER2	2	239184526	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	950313	239184526	4014847	21	12952											
NGLY1	55768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	25773885	25773885	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	25773885	A	T	25773885	2	4	205	1	0	0	0	0	0	0	0	1	10405	407	15	5		5	NGLY1	3	25773885	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08		25773885	172248545	22	12953											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38891987	38891988	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	-	38891988	GC	-	38891987	7	5	205	1	0	1	0	1	0	0	0	0	13926	971	34	0	1071	0	SCN11A	3	38891987	Frame_Shift_Del	DEL	GC	TCGA-B1-5398-01A-02D-1589-08	13118102	38891987	159130443	23	12954											
NDUFB5	4711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179334831	179334831	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	179334831	A	C	179334831	3	2	205	1	0	0	0	0	1	0	0	0	10291	86	3	5	355	5	NDUFB5	3	179334831	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	140442844	179334831	18687599	24	12955											
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183706444	183706444	+	Missense_Mutation	SNP	C	C	T	rs200810558		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	183706444	C	T	183706444	3	4	205	1	0	0	0	0	1	0	0	0	56	536	19	1	4102	1	ABCC5	3	183706444	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	4371613	183706444	14315986	25	12956											
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	74014608	74014608	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	74014608	T	A	74014608	3	1	205	1	0	0	0	0	1	0	0	0	646	1812	63	5	6430	5	ANKRD17	4	74014608	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08		74014608	117139668	26	12957											
SCD5	79966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	83719607	83719607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	83719607	C	G	83719607	3	3	205	1	0	0	0	0	1	0	0	0	13900	680	24	4	1134	4	SCD5	4	83719607	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	9704999	83719607	107434669	27	12958											
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156725753	156725753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	156725753	A	G	156725753	3	3	205	1	0	0	0	0	1	0	0	0	6902	410	15	3	1609	3	GUCY1B3	4	156725753	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	73006146	156725753	34428523	28	12959											
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	178243705	178243705	+	Silent	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	178243705	C	G	178243705	2	3	205	1	0	0	0	0	0	0	0	1	10327	900	32	4		4	NEIL3	4	178243705	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	21517952	178243705	12910571	29	12960											
CCDC110	256309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186380443	186380443	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	186380443	T	A	186380443	3	1	205	1	0	0	0	0	1	0	0	0	2749	1493	52	5	1211	5	CCDC110	4	186380443	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	8136738	186380443	4773833	30	12961											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31983432	31983432	+	Silent	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	31983432	C	G	31983432	2	3	205	1	0	0	0	0	0	0	0	1	11708	581	21	4		4	PDZD2	5	31983432	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08		31983432	148931828	31	12962											
AGXT2	64902	hgsc.bcm.edu;broad.mit.edu	37	5	35026613	35026613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	35026613	A	C	35026613	3	2	205	1	0	0	0	0	1	0	0	0	405	188	7	5	800	5	AGXT2	5	35026613	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	3043181	35026613	145888647	32	12963											
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	50683584	50683584	+	Splice_Site	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	50683584	G	T	50683584	5	4	205	1	0	0	0	0	0	0	1	0	7863	1275	44	4	489	4	ISL1	5	50683584	Splice_Site	SNP	G	TCGA-B1-5398-01A-02D-1589-08	15656971	50683584	130231676	33	12964											
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71739940	71739940	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	71739940	G	C	71739940	4	2	205	1	0	0	0	0	0	1	0	0	17882	1140	40	4	360	4	ZNF366	5	71739940	Nonsense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	21056356	71739940	109175320	34	12965											
MCC	4163	broad.mit.edu;bcgsc.ca	37	5	112458403	112458403	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	112458403	A	T	112458403	2	4	205	1	0	0	0	0	0	0	0	1	9380	407	15	5		5	MCC	5	112458403	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	40718463	112458403	68456857	35	12966											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140222316	140222316	+	Silent	SNP	G	G	C	rs202126810	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	140222316	G	C	140222316	2	2	205	1	0	0	0	0	0	0	0	1	11537	1103	39	4		4	PCDHA8	5	140222316	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	27763913	140222316	40692944	36	12967											
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	142513635	142513635	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	142513635	T	A	142513635	3	1	205	1	0	0	0	0	1	0	0	0	875	1580	55	5	1876	5	ARHGAP26	5	142513635	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	2291319	142513635	38401625	37	12968											
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145641187	145641187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	145641187	T	G	145641187	3	3	205	1	0	0	0	0	1	0	0	0	13140	1606	56	5	2058	5	RBM27	5	145641187	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	3127552	145641187	35274073	38	12969											
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	173370039	173370039	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	173370039	T	G	173370039	4	3	205	1	0	0	0	0	0	1	0	0	3805	1471	51	5	1283	5	CPEB4	5	173370039	Nonsense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	27728852	173370039	7545221	39	12970											
MAK	4117	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	10796389	10796389	+	Missense_Mutation	SNP	C	C	G	rs201812469	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	10796389	C	G	10796389	3	3	205	1	0	0	0	0	1	0	0	0	9204	884	31	4	910	4	MAK	6	10796389	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08		10796389	160318678	40	12971											
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30679993	30679993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	30679993	C	T	30679993	3	4	205	1	0	0	0	0	1	0	0	0	9410	855	30	2	4587	2	MDC1	6	30679993	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	19883604	30679993	140435074	41	12972											
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31778274	31778274	+	Silent	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	31778274	G	T	31778274	2	4	205	1	0	0	0	0	0	0	0	1	7417	1335	47	4		4	HSPA1L	6	31778274	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1098281	31778274	139336793	42	12973											
SLC39A7	7922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33169242	33169242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	33169242	G	C	33169242	3	2	205	1	0	0	0	0	1	0	0	0	14636	1349	47	4	222	4	SLC39A7	6	33169242	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1390968	33169242	137945825	43	12974											
MAPK14	1432	bcgsc.ca	37	6	36040750	36040750	+	Silent	SNP	C	C	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	36040750	C	A	36040750	2	1	205	1	0	0	0	0	0	0	0	1	9283	644	23	4		4	MAPK14	6	36040750	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	2871508	36040750	135074317	44	12975											
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	70451754	70451755	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	AA	70451755	-	AA	70451754	7	5	205	1	0	1	1	0	0	0	0	0	8849	825	29	0	1177	0	LMBRD1	6	70451754	Frame_Shift_Ins	INS	-	TCGA-B1-5398-01A-02D-1589-08	34411004	70451754	100663313	45	12976											
TPBG	7162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83075159	83075159	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	-	83075159	G	-	83075159	7	5	205	1	0	1	0	1	0	0	0	0	16406	1087	38	0	483	0	TPBG	6	83075159	Frame_Shift_Del	DEL	G	TCGA-B1-5398-01A-02D-1589-08	12623405	83075159	88039908	46	12977											
FIG4	9896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110086287	110086287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	110086287	A	T	110086287	3	4	205	1	0	0	0	0	1	0	0	0	5895	98	4	5	1560	5	FIG4	6	110086287	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	27011128	110086287	61028780	47	12978											
AGR2	10551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	16837318	16837319	+	Splice_Site	DNP	AC	AC	GA	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	GA	16837319	AC	GA	16837318	5	3	205	1	0	0	0	0	0	0	1	0	395	405	14	3	208	3	AGR2	7	16837318	Splice_Site	DNP	AC	TCGA-B1-5398-01A-02D-1589-08		16837318	142301345	48	12979											
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	20778604	20778604	+	Splice_Site	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	20778604	A	G	20778604	5	3	205	1	0	0	0	0	0	0	1	0	44	434	15	3	2997	3	ABCB5	7	20778604	Splice_Site	SNP	A	TCGA-B1-5398-01A-02D-1589-08	3941286	20778604	138360059	49	12980											
SBDS	51119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66459200	66459200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	66459200	T	C	66459200	3	2	205	1	0	0	0	0	1	0	0	0	13870	1594	55	3	511	3	SBDS	7	66459200	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	45680596	66459200	92679463	50	12981											
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107115465	107115465	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	107115465	T	A	107115465	2	1	205	1	0	0	0	0	0	0	0	1	6689	1509	53	5		5	GPR22	7	107115465	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	40656265	107115465	52023198	51	12982											
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123136764	123136764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	123136764	T	C	123136764	3	2	205	1	0	0	0	0	1	0	0	0	7827	1406	49	3	1183	3	IQUB	7	123136764	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	16021299	123136764	36001899	52	12983											
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	T	C	rs121913370		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	140453193	T	C	140453193	3	2	205	1	0	0	0	0	1	0	0	0	1498	1449	50	3	574	3	BRAF	7	140453193	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	17316429	140453193	18685470	53	12984											
C9orf66	157983	bcgsc.ca	37	9	214551	214551	+	Silent	SNP	G	G	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	214551	G	T	214551	2	4	205	1	0	0	0	0	0	0	0	1	2492	1219	43	4		4	C9orf66	9	214551	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08		214551	140998880	54	12985											
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86485505	86485505	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	86485505	T	A	86485505	4	1	205	1	0	0	0	0	0	1	0	0	8303	1792	62	5	1547	5	KIF27	9	86485505	Nonsense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	86270954	86485505	54727926	55	12986											
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90254289	90254289	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	90254289	G	C	90254289	3	2	205	1	0	0	0	0	1	0	0	0	4237	1339	47	4	458	4	DAPK1	9	90254289	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3768784	90254289	50959142	56	12987											
PSMD5	5711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123591454	123591454	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	123591454	T	C	123591454	2	2	205	1	0	0	0	0	0	0	0	1	12711	1490	52	3		3	PSMD5	9	123591454	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	33337165	123591454	17621977	57	12988											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131339498	131339498	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	131339498	T	C	131339498	2	2	205	1	0	0	0	0	0	0	0	1	15129	1538	54	3		3	SPTAN1	9	131339498	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	7748044	131339498	9873933	58	12989											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138683918	138683918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	138683918	G	A	138683918	3	1	205	1	0	0	0	0	1	0	0	0	8098	1145	40	1	3741	1	KCNT1	9	138683918	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	7344420	138683918	2529513	59	12990											
RHOBTB1	9886	hgsc.bcm.edu;broad.mit.edu	37	10	62648933	62648934	+	Nonsense_Mutation	DNP	TC	TC	AG	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	AG	62648934	TC	AG	62648933	4	1	205	1	0	0	0	0	0	1	0	0	13346	1559	54	5	1621	5	RHOBTB1	10	62648933	Nonsense_Mutation	DNP	TC	TCGA-B1-5398-01A-02D-1589-08		62648933	72885814	60	12991											
ENTPD7	57089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101458575	101458575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	101458575	G	C	101458575	3	2	205	1	0	0	0	0	1	0	0	0	5146	1261	44	4	1329	4	ENTPD7	10	101458575	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	38809642	101458575	34076172	61	12992											
NFKB2	4791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104156717	104156717	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	104156717	C	T	104156717	2	4	205	1	0	0	0	0	0	0	0	1	10383	506	18	2		2	NFKB2	10	104156717	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	2698142	104156717	31378030	62	12993											
MUC2	4583	hgsc.bcm.edu	37	11	1092643	1092643	+	Missense_Mutation	SNP	A	A	C	rs149562922		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	1092643	A	C	1092643	3	2	205	1	0	0	0	0	1	0	0	0	9982	43	2	5	4580	5	MUC2	11	1092643	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08		1092643	133913873	63	12994											
MUC2	4583	hgsc.bcm.edu	37	11	1092795	1092795	+	Silent	SNP	T	T	A	rs12786761		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	1092795	T	A	1092795	2	1	205	1	0	0	0	0	0	0	0	1	9982	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	152	1092795	133913721	64	12995											
OR51T1	401665	hgsc.bcm.edu;broad.mit.edu	37	11	4904096	4904096	+	Silent	SNP	A	A	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	4904096	A	C	4904096	2	2	205	1	0	0	0	0	0	0	0	1	11113	411	15	5		5	OR51T1	11	4904096	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	3811301	4904096	130102420	65	12996											
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6291417	6291417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	6291417	G	A	6291417	3	1	205	1	0	0	0	0	1	0	0	0	2883	1087	38	1	513	1	CCKBR	11	6291417	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1387321	6291417	128715099	66	12997											
MAPK8IP1	9479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	45926284	45926284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	45926284	C	T	45926284	3	4	205	1	0	0	0	0	1	0	0	0	9291	643	23	1	1826	1	MAPK8IP1	11	45926284	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	39634867	45926284	89080232	67	12998											
MADD	8567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47345285	47345285	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	47345285	G	C	47345285	3	2	205	1	0	0	0	0	1	0	0	0	9159	1059	37	4	4559	4	MADD	11	47345285	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1419001	47345285	87661231	68	12999											
OR5D14	219436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55563325	55563326	+	Missense_Mutation	DNP	CT	CT	AA	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	AA	55563326	CT	AA	55563325	3	1	205	1	0	0	0	0	1	0	0	0	11162	796	28	4	296	4	OR5D14	11	55563325	Missense_Mutation	DNP	CT	TCGA-B1-5398-01A-02D-1589-08	8218040	55563325	79443191	69	13000											
OR8I2	120586	broad.mit.edu	37	11	55861307	55861308	+	Frame_Shift_Ins	INS	-	-	T	rs112181516		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	55861308	-	T	55861307	7	5	205	1	0	1	1	0	0	0	0	0	11247	217	8	0	526	0	OR8I2	11	55861307	Frame_Shift_Ins	INS	-	TCGA-B1-5398-01A-02D-1589-08	297982	55861307	79145209	70	13001											
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63064875	63064875	+	Missense_Mutation	SNP	C	C	T	rs200183991		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	63064875	C	T	63064875	3	4	205	1	0	0	0	0	1	0	0	0	14454	536	19	1	617	1	SLC22A10	11	63064875	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	7203568	63064875	71941641	71	13002											
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71724282	71724282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	71724282	C	T	71724282	3	4	205	1	0	0	0	0	1	0	0	0	10757	797	28	2	2132	2	NUMA1	11	71724282	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	8659407	71724282	63282234	72	13003											
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71948376	71948376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	71948376	C	T	71948376	3	4	205	1	0	0	0	0	1	0	0	0	7768	643	23	1	3190	1	INPPL1	11	71948376	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	224094	71948376	63058140	73	13004											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73021440	73021440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	73021440	T	C	73021440	3	2	205	1	0	0	0	0	1	0	0	0	900	1435	50	3	1759	3	ARHGEF17	11	73021440	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	1073064	73021440	61985076	74	13005											
GDPD4	220032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76944148	76944148	+	Silent	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	76944148	G	C	76944148	2	2	205	1	0	0	0	0	0	0	0	1	6333	987	35	4		4	GDPD4	11	76944148	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3922708	76944148	58062368	75	13006											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877690	82877690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	82877690	A	G	82877690	3	3	205	1	0	0	0	0	1	0	0	0	11580	101	4	3	1769	3	PCF11	11	82877690	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	5933542	82877690	52128826	76	13007											
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	104825523	104825523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	104825523	C	T	104825523	3	4	205	1	0	0	0	0	1	0	0	0	2675	710	25	2	948	2	CASP4	11	104825523	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	21947833	104825523	30180993	77	13008											
CLDN25	644672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113651037	113651037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	113651037	A	G	113651037	3	3	205	1	0	0	0	0	1	0	0	0	3487	449	16	3	522	3	CLDN25	11	113651037	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	8825514	113651037	21355479	78	13009											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2909578	2909578	+	Silent	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	2909578	T	G	2909578	2	3	205	1	0	0	0	0	0	0	0	1	5917	1596	56	5		5	FKBP4	12	2909578	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08		2909578	130942317	79	13010											
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6707540	6707540	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	6707540	G	A	6707540	4	1	205	1	0	0	0	0	0	1	0	0	3329	1299	45	2	4324	2	CHD4	12	6707540	Nonsense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3797962	6707540	127144355	80	13011											
RASSF8	11228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26217472	26217472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	26217472	A	T	26217472	3	4	205	1	0	0	0	0	1	0	0	0	13105	391	14	5	151	5	RASSF8	12	26217472	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	19509932	26217472	107634423	81	13012											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40681240	40681240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	40681240	A	T	40681240	3	4	205	1	0	0	0	0	1	0	0	0	9040	101	4	5	2666	5	LRRK2	12	40681240	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	14463768	40681240	93170655	82	13013											
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	42858293	42858293	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	42858293	G	A	42858293	4	1	205	1	0	0	0	0	0	1	0	0	12496	1386	48	2	960	2	PRICKLE1	12	42858293	Nonsense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	2177053	42858293	90993602	83	13014											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu	37	12	43858498	43858498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	43858498	C	T	43858498	3	4	205	1	0	0	0	0	1	0	0	0	266	835	29	2	4446	2	ADAMTS20	12	43858498	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	1000205	43858498	89993397	84	13015											
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57922959	57922959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	57922959	C	T	57922959	3	4	205	1	0	0	0	0	1	0	0	0	9355	681	24	2	2996	2	MBD6	12	57922959	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	14064461	57922959	75928936	85	13016											
USP15	9958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	62795034	62795034	+	Silent	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	62795034	T	A	62795034	2	1	205	1	0	0	0	0	0	0	0	1	17058	1567	55	5		5	USP15	12	62795034	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	4872075	62795034	71056861	86	13017											
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	66838463	66838463	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	-	66838463	T	-	66838463	7	5	205	1	0	1	0	1	0	0	0	0	6794	1493	52	0	1850	0	GRIP1	12	66838463	Frame_Shift_Del	DEL	T	TCGA-B1-5398-01A-02D-1589-08	4043429	66838463	67013432	87	13018											
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105433493	105433493	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	105433493	C	T	105433493	2	4	205	1	0	0	0	0	0	0	0	1	495	912	32	2		2	ALDH1L2	12	105433493	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	38595030	105433493	28418402	88	13019											
PXN	5829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120653399	120653399	+	Silent	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	120653399	G	A	120653399	2	1	205	1	0	0	0	0	0	0	0	1	12865	1074	38	1		1	PXN	12	120653399	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	15219906	120653399	13198496	89	13020											
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	36382392	36382396	+	Frame_Shift_Del	DEL	GGAGA	GGAGA	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GGAGA	GGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	-	36382396	GGAGA	-	36382392	7	5	205	1	0	1	0	1	0	0	0	0	4293	1348	47	0	377	0	DCLK1	13	36382392	Frame_Shift_Del	DEL	GGAGA	TCGA-B1-5398-01A-02D-1589-08		36382392	78787486	90	13021											
F10	2159	broad.mit.edu;bcgsc.ca	37	13	113803360	113803360	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	-	113803360	C	-	113803360	7	5	205	1	0	1	0	1	0	0	0	0	5338	816	29	0	1026	0	F10	13	113803360	Frame_Shift_Del	DEL	C	TCGA-B1-5398-01A-02D-1589-08	77420968	113803360	1366518	91	13022											
OR4N5	390437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20612708	20612708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	20612708	T	G	20612708	3	3	205	1	0	0	0	0	1	0	0	0	11086	1783	62	5	816	5	OR4N5	14	20612708	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08		20612708	86736832	92	13023											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	45667882	45667882	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	-	45667882	T	-	45667882	7	5	205	1	0	1	0	1	0	0	0	0	5678	1522	53	0	5838	0	FANCM	14	45667882	Frame_Shift_Del	DEL	T	TCGA-B1-5398-01A-02D-1589-08	25055174	45667882	61681658	93	13024											
C14orf182	283551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50472313	50472313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	50472313	T	C	50472313	3	2	205	1	0	0	0	0	1	0	0	0	1767	1623	56	3	130	3	C14orf182	14	50472313	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	4804431	50472313	56877227	94	13025											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75516130	75516130	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	75516130	T	A	75516130	4	1	205	1	0	0	0	0	0	1	0	0	9625	1763	61	5	4180	5	MLH3	14	75516130	Nonsense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	25043817	75516130	31833410	95	13026											
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91642321	91642321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	91642321	T	A	91642321	3	1	205	1	0	0	0	0	1	0	0	0	1757	1461	51	5	669	5	C14orf159	14	91642321	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	16126191	91642321	15707219	96	13027											
PPP2R5C	5527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102323022	102323022	+	Splice_Site	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	102323022	G	A	102323022	5	1	205	1	0	0	0	0	0	0	1	0	12404	956	33	2	469	2	PPP2R5C	14	102323022	Splice_Site	SNP	G	TCGA-B1-5398-01A-02D-1589-08	10680701	102323022	5026518	97	13028											
BAG5	9529	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	104027517	104027517	+	Silent	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	104027517	A	T	104027517	2	4	205	1	0	0	0	0	0	0	0	1	1290	175	7	5		5	BAG5	14	104027517	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	1704495	104027517	3322023	98	13029											
AHNAK2	113146	broad.mit.edu	37	14	105409159	105409159	+	Missense_Mutation	SNP	G	G	A	rs202233797	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	105409159	G	A	105409159	3	1	205	1	0	0	0	0	1	0	0	0	415	1203	42	2	4762	2	AHNAK2	14	105409159	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1381642	105409159	1940381	99	13030											
AHNAK2	113146	broad.mit.edu	37	14	105413291	105413291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	105413291	C	A	105413291	4	1	205	1	0	0	0	0	0	1	0	0	415	893	31	4	8894	4	AHNAK2	14	105413291	Nonsense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	4132	105413291	1936249	100	13031											
TYRO3	7301	hgsc.bcm.edu	37	15	41854918	41854918	+	Splice_Site	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	41854918	T	G	41854918	5	3	205	1	0	0	0	0	0	0	1	0	16826	1710	59	5	596	5	TYRO3	15	41854918	Splice_Site	SNP	T	TCGA-B1-5398-01A-02D-1589-08		41854918	60676474	101	13032											
SCG3	29106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51993377	51993377	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	51993377	A	G	51993377	2	3	205	1	0	0	0	0	0	0	0	1	13905	233	9	3		3	SCG3	15	51993377	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	10138459	51993377	50538015	102	13033											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2807812	2807812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	2807812	A	T	2807812	3	4	205	1	0	0	0	0	1	0	0	0	15181	359	13	5	391	5	SRRM2	16	2807812	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08		2807812	87546941	103	13034											
CLEC16A	23274	broad.mit.edu	37	16	11217780	11217780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	11217780	G	A	11217780	3	1	205	1	0	0	0	0	1	0	0	0	3502	1087	38	1	2528	1	CLEC16A	16	11217780	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	8409968	11217780	79136973	104	13035											
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28157419	28157419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	28157419	T	A	28157419	3	1	205	1	0	0	0	0	1	0	0	0	17460	1812	63	5	2111	5	XPO6	16	28157419	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	16939639	28157419	62197334	105	13036											
MVP	9961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29848119	29848119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	29848119	T	G	29848119	3	3	205	1	0	0	0	0	1	0	0	0	10003	1580	55	5	771	5	MVP	16	29848119	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	1690700	29848119	60506634	106	13037											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30723210	30723210	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	-	30723210	A	-	30723210	7	5	205	1	0	1	0	1	0	0	0	0	15147	246	9	0	1585	0	SRCAP	16	30723210	Frame_Shift_Del	DEL	A	TCGA-B1-5398-01A-02D-1589-08	875091	30723210	59631543	107	13038											
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31090723	31090723	+	Silent	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	31090723	G	A	31090723	2	1	205	1	0	0	0	0	0	0	0	1	18074	991	35	2		2	ZNF646	16	31090723	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	367513	31090723	59264030	108	13039											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58633189	58633190	+	Frame_Shift_Ins	INS	-	-	CCAC	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	CCAC	58633190	-	CCAC	58633189	7	5	205	1	0	1	1	0	0	0	0	0	3619	1667	58	0	7491	0	CNOT1	16	58633189	Frame_Shift_Ins	INS	-	TCGA-B1-5398-01A-02D-1589-08	27542466	58633189	31721564	109	13040											
HAS3	3038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69143465	69143465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	69143465	T	A	69143465	3	1	205	1	0	0	0	0	1	0	0	0	6970	1580	55	5	169	5	HAS3	16	69143465	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	10510276	69143465	21211288	110	13041											
SLC38A8	146167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84063153	84063153	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	84063153	A	G	84063153	2	3	205	1	0	0	0	0	0	0	0	1	14623	175	7	3		3	SLC38A8	16	84063153	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	14919688	84063153	6291600	111	13042											
TMEM220	388335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10626593	10626593	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	10626593	G	C	10626593	3	2	205	1	0	0	0	0	1	0	0	0	16156	1174	41	4	149	4	TMEM220	17	10626593	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08		10626593	70568617	112	13043											
FBXW10	10517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	18653137	18653137	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	18653137	T	A	18653137	4	1	205	1	0	0	0	0	0	1	0	0	5770	1821	63	5	783	5	FBXW10	17	18653137	Nonsense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	8026544	18653137	62542073	113	13044											
DHX58	79132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40262859	40262859	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	40262859	T	A	40262859	3	1	205	1	0	0	0	0	1	0	0	0	4516	1580	55	5	1633	5	DHX58	17	40262859	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	21609722	40262859	40932351	114	13045											
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu	37	17	45699223	45699224	+	Nonsense_Mutation	DNP	GC	GC	TT	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	TT	45699224	GC	TT	45699223	4	4	205	1	0	0	0	0	0	1	0	0	10582	962	34	4	2787	4	NPEPPS	17	45699223	Nonsense_Mutation	DNP	GC	TCGA-B1-5398-01A-02D-1589-08	5436364	45699223	35495987	115	13046											
COL1A1	1277	hgsc.bcm.edu;bcgsc.ca	37	17	48265470	48265470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	48265470	G	C	48265470	3	2	205	1	0	0	0	0	1	0	0	0	3679	1203	42	4	1178	4	COL1A1	17	48265470	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	2566247	48265470	32929740	116	13047											
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu	37	17	74303551	74303551	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	74303551	C	G	74303551	3	3	205	1	0	0	0	0	1	0	0	0	12893	710	25	4	5036	4	QRICH2	17	74303551	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	26038081	74303551	6891659	117	13048											
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47375980	47375980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	47375980	T	A	47375980	3	1	205	1	0	0	0	0	1	0	0	0	10086	1838	64	5	1310	5	MYO5B	18	47375980	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08		47375980	30701268	118	13049											
FAM108A1	81926	broad.mit.edu	37	19	1880041	1880041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	1880041	A	G	1880041	3	3	205	1	0	0	0	0	1	0	0	0	5395	304	11	3	538	3	FAM108A1	19	1880041	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08		1880041	57248942	119	13050											
ADAMTS10	81794	broad.mit.edu	37	19	8665858	8665858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	8665858	T	C	8665858	3	2	205	1	0	0	0	0	1	0	0	0	256	1696	59	3	2631	3	ADAMTS10	19	8665858	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	6785817	8665858	50463125	120	13051											
EPOR	2057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11489162	11489162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	11489162	A	G	11489162	3	3	205	1	0	0	0	0	1	0	0	0	5191	217	8	3	505	3	EPOR	19	11489162	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	2823304	11489162	47639821	121	13052											
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	24309780	24309780	+	Silent	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	24309780	A	G	24309780	2	3	205	1	0	0	0	0	0	0	0	1	17810	98	4	3		3	ZNF254	19	24309780	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	12820618	24309780	34819203	122	13053											
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34924279	34924279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	34924279	G	A	34924279	3	1	205	1	0	0	0	0	1	0	0	0	16840	1058	37	1	334	1	UBA2	19	34924279	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	10614499	34924279	24204704	123	13054											
CEACAM6	4680	broad.mit.edu	37	19	42260723	42260723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	42260723	G	A	42260723	3	1	205	1	0	0	0	0	1	0	0	0	3198	1087	38	1	286	1	CEACAM6	19	42260723	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	7336444	42260723	16868260	124	13055											
LAIR1	3903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54872527	54872527	+	Silent	SNP	C	C	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	54872527	C	A	54872527	2	1	205	1	0	0	0	0	0	0	0	1	8609	813	29	4		4	LAIR1	19	54872527	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	12611804	54872527	4256456	125	13056											
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	58018029	58018029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	58018029	G	A	58018029	3	1	205	1	0	0	0	0	1	0	0	0	18158	1000	35	2	580	2	ZNF773	19	58018029	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3145502	58018029	1110954	126	13057	162	2									
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu	37	19	58018032	58018032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	58018032	A	G	58018032	3	3	205	1	0	0	0	0	1	0	0	0	18158	217	8	3	583	3	ZNF773	19	58018032	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	3	58018032	1110951	127	13058	162	2									
ASXL1	171023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31015986	31015986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	31015986	A	G	31015986	3	3	205	1	0	0	0	0	1	0	0	0	1066	304	11	3	332	3	ASXL1	20	31015986	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08		31015986	32009534	128	13059											
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	36989402	36989402	+	Silent	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	36989402	T	G	36989402	2	3	205	1	0	0	0	0	0	0	0	1	8658	1596	56	5		5	LBP	20	36989402	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	5973416	36989402	26036118	129	13060											
ZNF831	128611	broad.mit.edu	37	20	57769662	57769662	+	Silent	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	57769662	G	A	57769662	2	1	205	1	0	0	0	0	0	0	0	1	18197	1103	39	1		1	ZNF831	20	57769662	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	20780260	57769662	5255858	130	13061											
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46902710	46902710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	A	46902710	G	A	46902710	3	1	205	1	0	0	0	0	1	0	0	0	3677	1275	44	2	3089	2	COL18A1	21	46902710	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08		46902710	1227185	131	13062											
SLC2A11	66035	hgsc.bcm.edu;broad.mit.edu	37	22	24226511	24226511	+	Silent	SNP	C	C	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	24226511	C	T	24226511	2	4	205	1	0	0	0	0	0	0	0	1	14553	581	21	2		2	SLC2A11	22	24226511	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08		24226511	27078055	132	13063											
NF2	4771	hgsc.bcm.edu;ucsc.edu	37	22	30069350	30069350	+	Silent	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	30069350	T	C	30069350	2	2	205	1	0	0	0	0	0	0	0	1	10364	1567	55	3		3	NF2	22	30069350	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	5842839	30069350	21235216	133	13064											
MCHR1	2847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41076973	41076973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	41076973	A	T	41076973	3	4	205	1	0	0	0	0	1	0	0	0	9389	304	11	5	316	5	MCHR1	22	41076973	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	11007623	41076973	10227593	134	13065											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42149973	42149973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	G	42149973	T	G	42149973	3	3	205	1	0	0	0	0	1	0	0	0	9472	1696	59	5	1940	5	MEI1	22	42149973	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	1073000	42149973	9154593	135	13066											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46790151	46790151	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	T	46790151	A	T	46790151	3	4	205	1	0	0	0	0	1	0	0	0	3223	72	3	5	3280	5	CELSR1	22	46790151	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	4640178	46790151	4514415	136	13067											
ARSD	414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2826885	2826885	+	Splice_Site	SNP	T	T	C	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	C	2826885	T	C	2826885	5	2	205	1	0	0	0	0	0	0	1	0	989	1594	55	3	492	3	ARSD	23	2826885	Splice_Site	SNP	T	TCGA-B1-5398-01A-02D-1589-08		2826885	152443675	137	13068											
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	8074134	8074135	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	8074135	AG	-	8074134	7	5	206	1	0	1	0	1	0	0	0	0	5246	407	15	0	867	0	ERRFI1	1	8074134	Frame_Shift_Del	DEL	AG	TCGA-B1-A47M-01A-11D-A25F-10		8074134	241176487	1	13069											
KDM1A	23028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	23383993	23383993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	23383993	G	A	23383993	3	1	206	1	0	0	0	0	1	0	0	0	8129	1058	37	1	1037	1	KDM1A	1	23383993	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	15309859	23383993	225866628	2	13070											
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38042060	38042060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	38042060	C	T	38042060	3	4	206	1	0	0	0	0	1	0	0	0	6543	710	25	2	1220	2	GNL2	1	38042060	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	14658067	38042060	211208561	3	13071											
GLIS1	148979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53995548	53995548	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	53995548	C	T	53995548	2	4	206	1	0	0	0	0	0	0	0	1	6452	523	19	1		1	GLIS1	1	53995548	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	15953488	53995548	195255073	4	13072											
SAMD13	148418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	84768963	84768963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	84768963	G	T	84768963	3	4	206	1	0	0	0	0	1	0	0	0	13831	1377	48	4	94	4	SAMD13	1	84768963	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	30773415	84768963	164481658	5	13073											
CD58	965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117078689	117078689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	117078689	T	C	117078689	3	2	206	1	0	0	0	0	1	0	0	0	3027	1763	61	3	246	3	CD58	1	117078689	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	32309726	117078689	132171932	6	13074											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151381040	151381040	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	151381040	G	A	151381040	2	1	206	1	0	0	0	0	0	0	0	1	12193	1219	43	2		2	POGZ	1	151381040	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	34302351	151381040	97869581	7	13075											
VHLL	391104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156268771	156268771	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	156268771	C	T	156268771	4	4	206	1	0	0	0	0	0	1	0	0	17175	740	26	2	213	2	VHLL	1	156268771	Nonsense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	4887731	156268771	92981850	8	13076											
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197237545	197237545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	197237545	G	T	197237545	3	4	206	1	0	0	0	0	1	0	0	0	3850	1348	47	4	5	4	CRB1	1	197237545	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	40968774	197237545	52013076	9	13077											
KLHL12	59349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202866048	202866048	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	202866048	G	A	202866048	2	1	206	1	0	0	0	0	0	0	0	1	8375	1194	42	2		2	KLHL12	1	202866048	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	5628503	202866048	46384573	10	13078											
C4BPB	725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207271520	207271520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	207271520	C	A	207271520	3	1	206	1	0	0	0	0	1	0	0	0	2252	711	25	4	547	4	C4BPB	1	207271520	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	4405472	207271520	41979101	11	13079											
RPS6KC1	26750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	213251150	213251150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	213251150	T	C	213251150	3	2	206	1	0	0	0	0	1	0	0	0	13671	1406	49	3	264	3	RPS6KC1	1	213251150	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	5979630	213251150	35999471	12	13080											
TLR5	7100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223286361	223286361	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	223286361	G	A	223286361	2	1	206	1	0	0	0	0	0	0	0	1	15966	991	35	2		2	TLR5	1	223286361	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	10035211	223286361	25964260	13	13081											
TRIB2	28951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	12858616	12858616	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	12858616	C	A	12858616	2	1	206	1	0	0	0	0	0	0	0	1	16495	874	31	4		4	TRIB2	2	12858616	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10		12858616	230340757	14	13082											
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102805602	102805602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	102805602	G	A	102805602	3	1	206	1	0	0	0	0	1	0	0	0	7671	1377	48	2	131	2	IL1RL2	2	102805602	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	89946986	102805602	140393771	15	13083											
R3HDM1	23518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136393707	136393707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	136393707	G	T	136393707	3	4	206	1	0	0	0	0	1	0	0	0	12900	942	33	4	891	4	R3HDM1	2	136393707	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	33588105	136393707	106805666	16	13084											
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166848746	166848746	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	166848746	A	T	166848746	3	4	206	1	0	0	0	0	1	0	0	0	13927	275	10	5	994	5	SCN1A	2	166848746	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	30455039	166848746	76350627	17	13085											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098806	178098806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	178098806	G	T	178098806	3	4	206	1	0	0	0	0	1	0	0	0	10375	1377	48	4	1594	4	NFE2L2	2	178098806	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	11250060	178098806	65100567	18	13086											
FAM117B	150864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	203560690	203560690	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	203560690	G	-	203560690	7	5	206	1	0	1	0	1	0	0	0	0	5414	1319	46	0	694	0	FAM117B	2	203560690	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	25461884	203560690	39638683	19	13087											
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220404816	220404816	+	Silent	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	220404816	A	T	220404816	2	4	206	1	0	0	0	0	0	0	0	1	3370	175	7	5		5	CHPF	2	220404816	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	16844126	220404816	22794557	20	13088											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238259816	238259816	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	238259816	C	G	238259816	3	3	206	1	0	0	0	0	1	0	0	0	3703	507	18	4	2832	4	COL6A3	2	238259816	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	17855000	238259816	4939557	21	13089											
ILKAP	80895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239093869	239093869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	239093869	A	G	239093869	3	3	206	1	0	0	0	0	1	0	0	0	7721	14	1	3	721	3	ILKAP	2	239093869	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	834053	239093869	4105504	22	13090											
ABHD5	51099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	43744053	43744053	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	43744053	T	C	43744053	2	2	206	1	0	0	0	0	0	0	0	1	85	1567	55	3		3	ABHD5	3	43744053	Silent	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10		43744053	154278377	23	13091											
LMOD3	56203	broad.mit.edu	37	3	69168646	69168646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	69168646	A	G	69168646	3	3	206	1	0	0	0	0	1	0	0	0	8865	246	9	3	830	3	LMOD3	3	69168646	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	25424593	69168646	128853784	24	13092											
KIAA1407	57577	broad.mit.edu	37	3	113684200	113684200	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	113684200	G	A	113684200	2	1	206	1	0	0	0	0	0	0	0	1	8236	1164	41	2		2	KIAA1407	3	113684200	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	44515554	113684200	84338230	25	13093											
MUC4	4585	bcgsc.ca	37	3	195513470	195513470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	195513470	G	C	195513470	3	2	206	1	0	0	0	0	1	0	0	0	9985	1290	45	4		4	MUC4	3	195513470	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	81829270	195513470	2508960	26	13094											
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	197592302	197592302	+	Missense_Mutation	SNP	C	C	G	rs201375313	alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	197592302	C	G	197592302	3	3	206	1	0	0	0	0	1	0	0	0	8941	477	17	4	1787	4	LRCH3	3	197592302	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	2078832	197592302	430128	27	13095											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	44450334	44450334	+	Silent	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	44450334	A	T	44450334	2	4	206	1	0	0	0	0	0	0	0	1	8122	59	3	5		5	KCTD8	4	44450334	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10		44450334	146703942	28	13096											
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88053423	88053423	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	88053423	C	T	88053423	2	4	206	1	0	0	0	0	0	0	0	1	356	724	25	2		2	AFF1	4	88053423	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	43603089	88053423	103100853	29	13097											
ADH4	127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100057629	100057629	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	100057629	G	T	100057629	2	4	206	1	0	0	0	0	0	0	0	1	310	1280	45	4		4	ADH4	4	100057629	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	12004206	100057629	91096647	30	13098											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123109188	123109188	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	123109188	A	T	123109188	3	4	206	1	0	0	0	0	1	0	0	0	8215	14	1	5	792	5	KIAA1109	4	123109188	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	23051559	123109188	68045088	31	13099											
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	144457751	144457751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	144457751	A	C	144457751	3	2	206	1	0	0	0	0	1	0	0	0	14784	449	16	5	1457	5	SMARCA5	4	144457751	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	21348563	144457751	46696525	32	13100											
FAM149A	25854	broad.mit.edu;bcgsc.ca	37	4	187093141	187093141	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	187093141	A	T	187093141	3	4	206	1	0	0	0	0	1	0	0	0	5459	259	9	5	1491	5	FAM149A	4	187093141	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	42635390	187093141	4061135	33	13101											
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31294229	31294229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	31294229	C	A	31294229	3	1	206	1	0	0	0	0	1	0	0	0	3116	797	28	4	395	4	CDH6	5	31294229	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10		31294229	149621031	34	13102											
DTWD2	285605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118183873	118183873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	118183873	C	T	118183873	3	4	206	1	0	0	0	0	1	0	0	0	4794	652	23	1	266	1	DTWD2	5	118183873	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	86889644	118183873	62731387	35	13103											
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137346798	137346798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	137346798	C	G	137346798	3	3	206	1	0	0	0	0	1	0	0	0	5457	565	20	4	2300	4	FAM13B	5	137346798	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	19162925	137346798	43568462	36	13104											
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140572491	140572494	+	Frame_Shift_Del	DEL	AGTC	AGTC	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AGTC	AGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	140572494	AGTC	-	140572491	7	5	206	1	0	1	0	1	0	0	0	0	11542	301	11	0	368	0	PCDHB10	5	140572491	Frame_Shift_Del	DEL	AGTC	TCGA-B1-A47M-01A-11D-A25F-10	3225693	140572491	40342769	37	13105											
KIAA0141	9812	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141316790	141316790	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	141316790	A	C	141316790	3	2	206	1	0	0	0	0	1	0	0	0	8163	101	4	5	1219	5	KIAA0141	5	141316790	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	744299	141316790	39598470	38	13106											
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156590131	156590131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	156590131	G	A	156590131	3	1	206	1	0	0	0	0	1	0	0	0	5615	1261	44	2	676	2	FAM71B	5	156590131	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	15273341	156590131	24325129	39	13107											
CLK4	57396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	178030682	178030683	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	178030683	-	T	178030682	7	5	206	1	0	1	1	0	0	0	0	0	3541	1029	36	0	67	0	CLK4	5	178030682	Frame_Shift_Ins	INS	-	TCGA-B1-A47M-01A-11D-A25F-10	21440551	178030682	2884578	40	13108											
JARID2	3720	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	15512476	15512476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	15512476	T	C	15512476	3	2	206	1	0	0	0	0	1	0	0	0	7952	1696	59	3	3044	3	JARID2	6	15512476	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10		15512476	155602591	41	13109											
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31852462	31852462	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	31852462	G	-	31852462	7	5	206	1	0	1	0	1	0	0	0	0	4986	991	35	0	1105	0	EHMT2	6	31852462	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	16339986	31852462	139262605	42	13110	163	2									
EHMT2	10919	hgsc.bcm.edu;bcgsc.ca	37	6	31852467	31852467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	31852467	G	A	31852467	3	1	206	1	0	0	0	0	1	0	0	0	4986	1261	44	2	1110	2	EHMT2	6	31852467	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	5	31852467	139262600	43	13111	163	2									
TNXB	7148	broad.mit.edu	37	6	32029470	32029470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	32029470	G	T	32029470	3	4	206	1	0	0	0	0	1	0	0	0	16358	1377	48	4	7613	4	TNXB	6	32029470	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	177003	32029470	139085597	44	13112											
C6orf222	389384	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36294405	36294405	+	Silent	SNP	G	G	C	rs140796295	alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	36294405	G	C	36294405	2	2	206	1	0	0	0	0	0	0	0	1	2358	1103	39	4		4	C6orf222	6	36294405	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	4264935	36294405	134820662	45	13113											
PTCRA	171558	broad.mit.edu	37	6	42893185	42893185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	42893185	G	A	42893185	3	1	206	1	0	0	0	0	1	0	0	0	12745	1174	41	2	625	2	PTCRA	6	42893185	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	6598780	42893185	128221882	46	13114											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43184050	43184050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	43184050	T	C	43184050	3	2	206	1	0	0	0	0	1	0	0	0	4063	1783	62	3	6209	3	CUL9	6	43184050	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	290865	43184050	127931017	47	13115											
COL10A1	1300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116441541	116441541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	116441541	G	T	116441541	3	4	206	1	0	0	0	0	1	0	0	0	3668	1386	48	4	308	4	COL10A1	6	116441541	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	73257491	116441541	54673526	48	13116											
SBDS	51119	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	66456178	66456178	+	Silent	SNP	G	G	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	66456178	G	C	66456178	2	2	206	1	0	0	0	0	0	0	0	1	13870	1277	45	4		4	SBDS	7	66456178	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		66456178	92682485	49	13117											
CLDN12	9069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	90042282	90042282	+	Missense_Mutation	SNP	A	A	T	rs76988207	byfrequency;alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	90042282	A	T	90042282	3	4	206	1	0	0	0	0	1	0	0	0	3476	217	8	5	294	5	CLDN12	7	90042282	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	23586104	90042282	69096381	50	13118											
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121769482	121769482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	121769482	G	A	121769482	3	1	206	1	0	0	0	0	1	0	0	0	24	1319	46	2	2548	2	AASS	7	121769482	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	31727200	121769482	37369181	51	13119											
VIPR2	7434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	158828654	158828654	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	158828654	T	C	158828654	2	2	206	1	0	0	0	0	0	0	0	1	17182	1519	53	3		3	VIPR2	7	158828654	Silent	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	37059172	158828654	310009	52	13120											
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	16021617	16021617	+	Silent	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	16021617	A	G	16021617	2	3	206	1	0	0	0	0	0	0	0	1	9893	98	4	3		3	MSR1	8	16021617	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10		16021617	130342405	53	13121											
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	72182014	72182014	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	72182014	G	A	72182014	2	1	206	1	0	0	0	0	0	0	0	1	5330	1020	36	2		2	EYA1	8	72182014	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	56160397	72182014	74182008	54	13122											
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124989660	124989660	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	124989660	C	T	124989660	4	4	206	1	0	0	0	0	0	1	0	0	5822	760	27	1	908	1	FER1L6	8	124989660	Nonsense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	52807646	124989660	21374362	55	13123											
GLDC	2731	broad.mit.edu	37	9	6536187	6536187	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	6536187	C	A	6536187	2	1	206	1	0	0	0	0	0	0	0	1	6440	581	21	4		4	GLDC	9	6536187	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10		6536187	134677244	56	13124											
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79325026	79325026	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	79325026	G	A	79325026	4	1	206	1	0	0	0	0	0	1	0	0	12651	1299	45	2	7150	2	PRUNE2	9	79325026	Nonsense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	72788839	79325026	61888405	57	13125											
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	96079890	96079890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	96079890	C	T	96079890	3	4	206	1	0	0	0	0	1	0	0	0	17390	652	23	1	6715	1	WNK2	9	96079890	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	16754864	96079890	45133541	58	13126											
TDRD7	23424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100227199	100227199	+	Silent	SNP	T	T	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	100227199	T	G	100227199	2	3	206	1	0	0	0	0	0	0	0	1	15747	1509	53	5		5	TDRD7	9	100227199	Silent	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	4147309	100227199	40986232	59	13127											
CTNNAL1	8727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	111761412	111761413	+	Missense_Mutation	DNP	AT	AT	CC	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	CC	111761413	AT	CC	111761412	3	2	206	1	0	0	0	0	1	0	0	0	4017	449	16	5	2010	5	CTNNAL1	9	111761412	Missense_Mutation	DNP	AT	TCGA-B1-A47M-01A-11D-A25F-10	11534213	111761412	29452019	60	13128											
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125673886	125673886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	125673886	T	C	125673886	3	2	206	1	0	0	0	0	1	0	0	0	17564	1841	64	3	812	3	ZBTB6	9	125673886	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	13912474	125673886	15539545	61	13129											
ODF2	4957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131250301	131250301	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	131250301	G	-	131250301	7	5	206	1	0	1	0	1	0	0	0	0	10834	1277	45	0	1638	0	ODF2	9	131250301	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	5576415	131250301	9963130	62	13130											
NDOR1	27158	broad.mit.edu	37	9	140110791	140110791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	140110791	C	G	140110791	3	3	206	1	0	0	0	0	1	0	0	0	10256	565	20	4	1798	4	NDOR1	9	140110791	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	8860490	140110791	1102640	63	13131											
PARG	8505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	51028288	51028288	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	51028288	A	-	51028288	7	5	206	1	0	1	0	1	0	0	0	0	11455	246	9	0	239	0	PARG	10	51028288	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10		51028288	84506459	64	13132	164	2									
PARG	8505	hgsc.bcm.edu;bcgsc.ca	37	10	51028292	51028292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	51028292	A	T	51028292	3	4	206	1	0	0	0	0	1	0	0	0	11455	362	13	5	243	5	PARG	10	51028292	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	4	51028292	84506455	65	13133	164	2									
TET1	80312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70446307	70446307	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	70446307	G	-	70446307	7	5	206	1	0	1	0	1	0	0	0	0	15781	962	34	0	5285	0	TET1	10	70446307	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	19418015	70446307	65088440	66	13134											
MGEA5	10724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103552626	103552626	+	Silent	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	103552626	A	G	103552626	2	3	206	1	0	0	0	0	0	0	0	1	9562	456	16	3		3	MGEA5	10	103552626	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	33106319	103552626	31982121	67	13135											
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112361757	112361757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	112361757	T	A	112361757	3	1	206	1	0	0	0	0	1	0	0	0	14797	1490	52	5	3024	5	SMC3	10	112361757	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	8809131	112361757	23172990	68	13136											
RAB11FIP2	22841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	119798692	119798692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	119798692	C	A	119798692	3	1	206	1	0	0	0	0	1	0	0	0	12907	912	32	4	494	4	RAB11FIP2	10	119798692	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	7436935	119798692	15736055	69	13137											
OR51E1	143503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4674486	4674486	+	Missense_Mutation	SNP	G	G	A	rs148787592		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	4674486	G	A	4674486	3	1	206	1	0	0	0	0	1	0	0	0	11101	1145	40	1	732	1	OR51E1	11	4674486	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		4674486	130332030	70	13138											
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57466844	57466844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	57466844	G	A	57466844	3	1	206	1	0	0	0	0	1	0	0	0	17630	1377	48	2	1974	2	ZDHHC5	11	57466844	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	52792358	57466844	77539672	71	13139											
ARL2	402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64789247	64789247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	64789247	G	A	64789247	3	1	206	1	0	0	0	0	1	0	0	0	933	1087	38	1	493	1	ARL2	11	64789247	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	7322403	64789247	70217269	72	13140											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117869943	117869943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	117869943	G	T	117869943	3	4	206	1	0	0	0	0	1	0	0	0	7627	1203	42	4	1350	4	IL10RA	11	117869943	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	53080696	117869943	17136573	73	13141											
TAS2R14	50840	broad.mit.edu;bcgsc.ca	37	12	11091488	11091488	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	11091488	A	-	11091488	7	5	206	1	0	1	0	1	0	0	0	0	15580	362	13	0	637	0	TAS2R14	12	11091488	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10		11091488	122760407	74	13142											
NAB2	4665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57486863	57486863	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	57486863	C	-	57486863	7	5	206	1	0	1	0	1	0	0	0	0	10139	506	18	0	1179	0	NAB2	12	57486863	Frame_Shift_Del	DEL	C	TCGA-B1-A47M-01A-11D-A25F-10	46395375	57486863	76365032	75	13143											
SLC25A15	10166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	41381598	41381598	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	41381598	A	-	41381598	7	5	206	1	0	1	0	1	0	0	0	0	14490	434	15	0	635	0	SLC25A15	13	41381598	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10		41381598	73788280	76	13144											
DOCK9	23348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99481633	99481633	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	99481633	G	A	99481633	2	1	206	1	0	0	0	0	0	0	0	1	4696	1310	46	2		2	DOCK9	13	99481633	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	58100035	99481633	15688245	77	13145											
CLEC14A	161198	broad.mit.edu	37	14	38724899	38724899	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	38724899	A	-	38724899	7	5	206	1	0	1	0	1	0	0	0	0	3501	131	5	0	1147	0	CLEC14A	14	38724899	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10		38724899	68624641	78	13146											
FBXO33	254170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	39871674	39871674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	39871674	A	G	39871674	3	3	206	1	0	0	0	0	1	0	0	0	5750	420	15	3	1038	3	FBXO33	14	39871674	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	1146775	39871674	67477866	79	13147											
L2HGDH	79944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50713788	50713788	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	50713788	T	C	50713788	2	2	206	1	0	0	0	0	0	0	0	1	8597	1432	50	3		3	L2HGDH	14	50713788	Silent	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	10842114	50713788	56635752	80	13148											
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	70990728	70990729	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	70990729	CT	-	70990728	7	5	206	1	0	1	0	1	0	0	0	0	242	680	24	0	1437	0	ADAM20	14	70990728	Frame_Shift_Del	DEL	CT	TCGA-B1-A47M-01A-11D-A25F-10	20276940	70990728	36358812	81	13149											
MAP3K9	4293	broad.mit.edu	37	14	71199898	71199898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	71199898	T	G	71199898	3	3	206	1	0	0	0	0	1	0	0	0	9264	1638	57	5	1134	5	MAP3K9	14	71199898	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	209170	71199898	36149642	82	13150											
GALC	2581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	88412007	88412007	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	88412007	A	C	88412007	3	2	206	1	0	0	0	0	1	0	0	0	6208	126	5	5	513	5	GALC	14	88412007	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	17212109	88412007	18937533	83	13151											
CALM1	801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	90870815	90870815	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	90870815	C	T	90870815	2	4	206	1	0	0	0	0	0	0	0	1	2586	816	29	2		2	CALM1	14	90870815	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	2458808	90870815	16478725	84	13152											
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25981205	25981205	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	25981205	G	A	25981205	2	1	206	1	0	0	0	0	0	0	0	1	1116	1311	46	2		2	ATP10A	15	25981205	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		25981205	76550187	85	13153											
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49293279	49293279	+	Silent	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	49293279	A	C	49293279	2	2	206	1	0	0	0	0	0	0	0	1	14020	233	9	5		5	SECISBP2L	15	49293279	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	23312074	49293279	53238113	86	13154											
TEX9	374618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	56686956	56686956	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	56686956	A	-	56686956	7	5	206	1	0	1	0	1	0	0	0	0	15796	246	9	0	786	0	TEX9	15	56686956	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10	7393677	56686956	45844436	87	13155											
ARL2BP	23568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57283687	57283687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	57283687	G	T	57283687	3	4	206	1	0	0	0	0	1	0	0	0	934	1339	47	4	230	4	ARL2BP	16	57283687	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		57283687	33071066	88	13156											
KCTD11	147040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7256621	7256621	+	Silent	SNP	C	C	T	rs79616684		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	7256621	C	T	7256621	2	4	206	1	0	0	0	0	0	0	0	1	8105	477	17	2		2	KCTD11	17	7256621	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10		7256621	73938589	89	13157											
PEX12	5193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33904481	33904481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	33904481	A	C	33904481	3	2	206	1	0	0	0	0	1	0	0	0	11747	72	3	5	831	5	PEX12	17	33904481	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	26647860	33904481	47290729	90	13158											
CDC6	990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38447445	38447445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	38447445	A	G	38447445	3	3	206	1	0	0	0	0	1	0	0	0	3085	72	3	3	320	3	CDC6	17	38447445	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	4542964	38447445	42747765	91	13159											
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42160014	42160014	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	42160014	G	C	42160014	3	2	206	1	0	0	0	0	1	0	0	0	7017	1203	42	4	854	4	HDAC5	17	42160014	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	3712569	42160014	39035196	92	13160											
USP32	84669	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58288852	58288852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	58288852	C	A	58288852	3	1	206	1	0	0	0	0	1	0	0	0	17075	681	24	4	2671	4	USP32	17	58288852	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	16128838	58288852	22906358	93	13161											
NOL11	25926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65739904	65739904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	65739904	G	A	65739904	3	1	206	1	0	0	0	0	1	0	0	0	10528	1175	41	2	2159	2	NOL11	17	65739904	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	7451052	65739904	15455306	94	13162											
LGALS3BP	3959	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76967786	76967786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	76967786	T	C	76967786	3	2	206	1	0	0	0	0	1	0	0	0	8751	1435	50	3	131	3	LGALS3BP	17	76967786	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	11227882	76967786	4227424	95	13163											
THOC1	9984	bcgsc.ca	37	18	254346	254346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	254346	A	G	254346	3	3	206	1	0	0	0	0	1	0	0	0	15876	131	5	3	1499	3	THOC1	18	254346	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10		254346	77822902	96	13164											
TTR	7276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29178601	29178601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	29178601	A	G	29178601	3	3	206	1	0	0	0	0	1	0	0	0	16750	449	16	3	421	3	TTR	18	29178601	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	28924255	29178601	48898647	97	13165											
C18orf21	83608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	33558958	33558958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	33558958	C	G	33558958	3	3	206	1	0	0	0	0	1	0	0	0	1899	565	20	4	670	4	C18orf21	18	33558958	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	4380357	33558958	44518290	98	13166											
MYO5B	4645	broad.mit.edu	37	18	47511190	47511190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	47511190	C	A	47511190	3	1	206	1	0	0	0	0	1	0	0	0	10086	710	25	4	4834	4	MYO5B	18	47511190	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	13952232	47511190	30566058	99	13167											
TSHZ1	10194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	72999467	72999468	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	72999468	-	A	72999467	7	5	206	1	0	1	1	0	0	0	0	0	16635	739	26	0	1972	0	TSHZ1	18	72999467	Frame_Shift_Ins	INS	-	TCGA-B1-A47M-01A-11D-A25F-10	25488277	72999467	5077781	100	13168	165	3									
TSHZ1	10194	hgsc.bcm.edu;bcgsc.ca	37	18	72999468	72999468	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	72999468	C	A	72999468	2	1	206	1	0	0	0	0	0	0	0	1	16635	581	21	4		4	TSHZ1	18	72999468	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	1	72999468	5077780	101	13169	165	3									
TSHZ1	10194	hgsc.bcm.edu	37	18	72999471	72999472	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	72999472	-	A	72999471	7	5	206	1	0	1	1	0	0	0	0	0	16635	11	1	0	1976	0	TSHZ1	18	72999471	Frame_Shift_Ins	INS	-	TCGA-B1-A47M-01A-11D-A25F-10	3	72999471	5077777	102	13170	165	3									
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37210700	37210701	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	AT	37210701	TC	AT	37210700	3	1	206	1	0	0	0	0	1	0	0	0	18010	1538	54	5	991	5	ZNF567	19	37210700	Missense_Mutation	DNP	TC	TCGA-B1-A47M-01A-11D-A25F-10		37210700	21918283	103	13171											
ZNF569	148266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	37904781	37904781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	C	37904781	T	C	37904781	3	2	206	1	0	0	0	0	1	0	0	0	18012	1464	51	3	1285	3	ZNF569	19	37904781	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	694081	37904781	21224202	104	13172											
RABAC1	10567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42461228	42461228	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	42461228	G	T	42461228	2	4	206	1	0	0	0	0	0	0	0	1	12973	1306	46	4		4	RABAC1	19	42461228	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	4556447	42461228	16667755	105	13173											
IRGQ	126298	broad.mit.edu	37	19	44099300	44099300	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	44099300	G	-	44099300	7	5	206	1	0	1	0	1	0	0	0	0	7846	1348	47	0	1688	0	IRGQ	19	44099300	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	1638072	44099300	15029683	106	13174											
CCDC155	147872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49920441	49920441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	49920441	G	A	49920441	3	1	206	1	0	0	0	0	1	0	0	0	2790	971	34	2	1535	2	CCDC155	19	49920441	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	5821141	49920441	9208542	107	13175											
AP2A1	160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50285918	50285918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	50285918	A	G	50285918	3	3	206	1	0	0	0	0	1	0	0	0	739	43	2	3	424	3	AP2A1	19	50285918	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	365477	50285918	8843065	108	13176											
ZNF880	400713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52887363	52887363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	52887363	C	T	52887363	3	4	206	1	0	0	0	0	1	0	0	0	18209	710	25	2	544	2	ZNF880	19	52887363	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	2601445	52887363	6241620	109	13177											
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	10639160	10639160	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	10639160	T	G	10639160	3	3	206	1	0	0	0	0	1	0	0	0	7941	1725	60	5	3098	5	JAG1	20	10639160	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10		10639160	52386360	110	13178											
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56098141	56098141	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	-	56098141	T	-	56098141	7	5	206	1	0	1	0	1	0	0	0	0	4003	1493	52	0	1290	0	CTCFL	20	56098141	Frame_Shift_Del	DEL	T	TCGA-B1-A47M-01A-11D-A25F-10	45458981	56098141	6927379	111	13179											
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60908164	60908164	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	60908164	G	A	60908164	2	1	206	1	0	0	0	0	0	0	0	1	8616	1280	45	2		2	LAMA5	20	60908164	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	4810023	60908164	2117356	112	13180											
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62851117	62851117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	G	62851117	A	G	62851117	3	3	206	1	0	0	0	0	1	0	0	0	10113	131	5	3	2065	3	MYT1	20	62851117	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	1942953	62851117	174403	113	13181											
DYRK1A	1859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	38884349	38884349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	38884349	G	A	38884349	3	1	206	1	0	0	0	0	1	0	0	0	4856	1348	47	2	1933	2	DYRK1A	21	38884349	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		38884349	9245546	114	13182											
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24175838	24175839	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	TT	24175839	-	TT	24175838	7	5	206	1	0	1	1	0	0	0	0	0	14787	912	32	0	1096	0	SMARCB1	22	24175838	Frame_Shift_Ins	INS	-	TCGA-B1-A47M-01A-11D-A25F-10		24175838	27128728	115	13183											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30038228	30038229	+	Missense_Mutation	DNP	CT	CT	AC	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	AC	30038229	CT	AC	30038228	3	1	206	1	0	0	0	0	1	0	0	0	10364	681	24	4	415	4	NF2	22	30038228	Missense_Mutation	DNP	CT	TCGA-B1-A47M-01A-11D-A25F-10	5862390	30038228	21266338	116	13184											
SLC35A2	7355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48762075	48762075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	A	48762075	G	A	48762075	3	1	206	1	0	0	0	0	1	0	0	0	14584	1261	44	2	243	2	SLC35A2	23	48762075	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		48762075	106508485	117	13185											
LPAR4	2846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	78011381	78011381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	T	78011381	C	T	78011381	3	4	206	1	0	0	0	0	1	0	0	0	8914	507	18	2	1017	2	LPAR4	23	78011381	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	29249306	78011381	77259179	118	13186											
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63119731	63119731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	G	63119731	A	G	63119731	3	3	207	1	0	0	0	0	1	0	0	0	4694	101	4	3	6273	3	DOCK7	1	63119731	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10		63119731	186130890	1	13187											
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150131515	150131515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	150131515	C	A	150131515	3	1	207	1	0	0	0	0	1	0	0	0	12091	855	30	4	1049	4	PLEKHO1	1	150131515	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	87011784	150131515	99119106	2	13188											
C2orf61	285051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	47382353	47382353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	G	47382353	A	G	47382353	3	3	207	1	0	0	0	0	1	0	0	0	2182	449	16	3	751	3	C2orf61	2	47382353	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10		47382353	195817020	3	13189											
ZNF2	7549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95847510	95847510	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	G	95847510	C	G	95847510	3	3	207	1	0	0	0	0	1	0	0	0	17772	739	26	4	951	4	ZNF2	2	95847510	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	48465157	95847510	147351863	4	13190											
HOXD8	3234	hgsc.bcm.edu;bcgsc.ca	37	2	176996164	176996165	+	Frame_Shift_Ins	INS	-	-	CCCTAGCCCT	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	CCCTAGCCCT	176996165	-	CCCTAGCCCT	176996164	7	5	207	1	0	1	1	0	0	0	0	0	7332	1087	38	0	703	0	HOXD8	2	176996164	Frame_Shift_Ins	INS	-	TCGA-B1-A47N-01A-11D-A25F-10	81148654	176996164	66203209	5	13191											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	197750195	197750195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	197750195	G	T	197750195	3	4	207	1	0	0	0	0	1	0	0	0	11784	1328	46	4	1607	4	PGAP1	2	197750195	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	20754031	197750195	45449178	6	13192											
STK11IP	114790	broad.mit.edu;bcgsc.ca	37	2	220465972	220465972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	220465972	C	T	220465972	3	4	207	1	0	0	0	0	1	0	0	0	15300	913	32	2	120	2	STK11IP	2	220465972	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	22715777	220465972	22733401	7	13193											
PFKFB4	5210	broad.mit.edu	37	3	48576038	48576038	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	48576038	G	T	48576038	2	4	207	1	0	0	0	0	0	0	0	1	11770	1306	46	4		4	PFKFB4	3	48576038	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		48576038	149446392	8	13194											
RRP9	9136	broad.mit.edu	37	3	51968675	51968675	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	51968675	G	A	51968675	2	1	207	1	0	0	0	0	0	0	0	1	13704	1219	43	2		2	RRP9	3	51968675	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	3392637	51968675	146053755	9	13195											
MFSD1	64747	broad.mit.edu	37	3	158539426	158539426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	158539426	G	T	158539426	3	4	207	1	0	0	0	0	1	0	0	0	9534	971	34	4	1089	4	MFSD1	3	158539426	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	106570751	158539426	39483004	10	13196											
TPRG1	285386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	188925189	188925189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	G	188925189	A	G	188925189	3	3	207	1	0	0	0	0	1	0	0	0	16430	304	11	3	18	3	TPRG1	3	188925189	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10	30385763	188925189	9097241	11	13197											
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195490958	195490958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	195490958	G	A	195490958	3	1	207	1	0	0	0	0	1	0	0	0	9985	1086	38	1	2296	1	MUC4	3	195490958	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	6565769	195490958	2531472	12	13198											
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68534339	68534339	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	C	68534339	T	C	68534339	2	2	207	1	0	0	0	0	0	0	0	1	16844	1567	55	3		3	UBA6	4	68534339	Silent	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10		68534339	122619937	13	13199											
C6orf15	29113	broad.mit.edu	37	6	31079878	31079878	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	31079878	G	T	31079878	2	4	207	1	0	0	0	0	0	0	0	1	2338	958	34	4		4	C6orf15	6	31079878	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		31079878	140035189	14	13200											
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33400480	33400480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	33400480	C	T	33400480	3	4	207	1	0	0	0	0	1	0	0	0	15459	527	19	1	424	1	SYNGAP1	6	33400480	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	2320602	33400480	137714587	15	13201											
HMGN3	9324	broad.mit.edu	37	6	79918284	79918284	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	79918284	G	T	79918284	2	4	207	1	0	0	0	0	0	0	0	1	7243	1144	40	4		4	HMGN3	6	79918284	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	46517804	79918284	91196783	16	13202											
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161026202	161026202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	G	161026202	A	G	161026202	3	3	207	1	0	0	0	0	1	0	0	0	8910	420	15	3	3389	3	LPA	6	161026202	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10	81107918	161026202	10088865	17	13203											
TAX1BP1	8887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27856559	27856559	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	27856559	A	T	27856559	4	4	207	1	0	0	0	0	0	1	0	0	15606	180	7	5	2041	5	TAX1BP1	7	27856559	Nonsense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10		27856559	131282104	18	13204											
ZNF713	349075	bcgsc.ca	37	7	55991337	55991337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	55991337	G	T	55991337	3	4	207	1	0	0	0	0	1	0	0	0	18129	1339	47	4	223	4	ZNF713	7	55991337	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	28134778	55991337	103147326	19	13205											
GIMAP8	155038	broad.mit.edu	37	7	150174500	150174500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	150174500	G	T	150174500	3	4	207	1	0	0	0	0	1	0	0	0	6392	971	34	4	1644	4	GIMAP8	7	150174500	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	94183163	150174500	8964163	20	13206											
CHD7	55636	broad.mit.edu	37	8	61775123	61775123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	61775123	C	T	61775123	3	4	207	1	0	0	0	0	1	0	0	0	3332	768	27	1	8130	1	CHD7	8	61775123	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		61775123	84588899	21	13207											
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	133948708	133948708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	133948708	G	A	133948708	3	1	207	1	0	0	0	0	1	0	0	0	8623	1014	35	2	3572	2	LAMC3	9	133948708	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		133948708	7264723	22	13208											
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	24873803	24873803	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	C	24873803	T	C	24873803	2	2	207	1	0	0	0	0	0	0	0	1	871	1538	54	3		3	ARHGAP21	10	24873803	Silent	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10		24873803	110660944	23	13209											
MUC5B	727897	broad.mit.edu	37	11	1281625	1281625	+	Splice_Site	SNP	T	T	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	G	1281625	T	G	1281625	5	3	207	1	0	0	0	0	0	0	1	0	9986	1652	57	5	17163	5	MUC5B	11	1281625	Splice_Site	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10		1281625	133724891	24	13210											
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643082	1643082	+	Missense_Mutation	SNP	T	T	C	rs59610171		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	C	1643082	T	C	1643082	3	2	207	1	0	0	0	0	1	0	0	0	8570	1406	49	3	448	3	KRTAP5-4	11	1643082	Missense_Mutation	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10	361457	1643082	133363434	25	13211											
ARHGAP1	392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46702650	46702650	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	46702650	G	A	46702650	2	1	207	1	0	0	0	0	0	0	0	1	861	1049	37	1		1	ARHGAP1	11	46702650	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	45059568	46702650	88303866	26	13212											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62296065	62296065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	62296065	C	T	62296065	3	4	207	1	0	0	0	0	1	0	0	0	414	478	17	2	11968	2	AHNAK	11	62296065	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	15593415	62296065	72710451	27	13213											
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66636384	66636384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	C	66636384	T	C	66636384	3	2	207	1	0	0	0	0	1	0	0	0	11504	1821	63	3	2637	3	PC	11	66636384	Missense_Mutation	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10	4340319	66636384	68370132	28	13214											
MAML2	84441	hgsc.bcm.edu	37	11	95825248	95825248	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	95825248	C	T	95825248	2	4	207	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825248	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	29188864	95825248	39181268	29	13215	166	2									
MAML2	84441	ucsc.edu	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	95825254	C	T	95825254	2	4	207	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825254	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	6	95825254	39181262	30	13216	166	2									
SLC6A12	6539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	306024	306024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	G	306024	A	G	306024	3	3	207	1	0	0	0	0	1	0	0	0	14688	246	9	3	768	3	SLC6A12	12	306024	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10		306024	133545871	31	13217											
CACNA1C	775	bcgsc.ca	37	12	2794921	2794921	+	Missense_Mutation	SNP	G	G	A	rs71458011		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	2794921	G	A	2794921	3	1	207	1	0	0	0	0	1	0	0	0	2542	1059	37	1	6476	1	CACNA1C	12	2794921	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	2488897	2794921	131056974	32	13218											
R3HDM2	22864	broad.mit.edu	37	12	57648792	57648792	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	C	57648792	A	C	57648792	3	2	207	1	0	0	0	0	1	0	0	0	12901	159	6	5	239	5	R3HDM2	12	57648792	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10	54853871	57648792	76203103	33	13219											
ALX1	8092	broad.mit.edu;bcgsc.ca	37	12	85680745	85680745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	85680745	G	A	85680745	3	1	207	1	0	0	0	0	1	0	0	0	556	1290	45	2	656	2	ALX1	12	85680745	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	28031953	85680745	48171150	34	13220											
GALNT9	50614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132834320	132834320	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	132834320	G	A	132834320	2	1	207	1	0	0	0	0	0	0	0	1	6227	1136	40	1		1	GALNT9	12	132834320	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	47153575	132834320	1017575	35	13221											
GJA3	2700	broad.mit.edu	37	13	20717168	20717168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	20717168	G	A	20717168	3	1	207	1	0	0	0	0	1	0	0	0	6409	1145	40	1	1051	1	GJA3	13	20717168	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		20717168	94452710	36	13222											
GPR12	2835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	27332981	27332981	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	27332981	C	T	27332981	2	4	207	1	0	0	0	0	0	0	0	1	6642	755	27	1		1	GPR12	13	27332981	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	6615813	27332981	87836897	37	13223											
FRY	10129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	32823745	32823745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	32823745	G	T	32823745	3	4	207	1	0	0	0	0	1	0	0	0	6070	1116	39	4	7285	4	FRY	13	32823745	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	5490764	32823745	82346133	38	13224											
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45564665	45564665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	45564665	G	A	45564665	3	1	207	1	0	0	0	0	1	0	0	0	12579	971	34	2	225	2	PRPF39	14	45564665	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		45564665	61784875	39	13225											
ARG2	384	broad.mit.edu	37	14	68117524	68117524	+	Missense_Mutation	SNP	G	G	T	rs148319106	byfrequency;alternate_allele	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	68117524	G	T	68117524	3	4	207	1	0	0	0	0	1	0	0	0	858	1377	48	4	982	4	ARG2	14	68117524	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	22552859	68117524	39232016	40	13226											
TGM7	116179	broad.mit.edu	37	15	43571977	43571977	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	43571977	C	A	43571977	2	1	207	1	0	0	0	0	0	0	0	1	15847	697	25	4		4	TGM7	15	43571977	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		43571977	58959415	41	13227											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75673957	75673957	+	Silent	SNP	T	T	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	75673957	T	A	75673957	2	1	207	1	0	0	0	0	0	0	0	1	14338	1567	55	5		5	SIN3A	15	75673957	Silent	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10	32101980	75673957	26857435	42	13228			1	21		2	2	26	T		4.199319e-05
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75673982	75673982	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	75673982	T	A	75673982	3	1	207	1	0	0	0	0	1	0	0	0	14338	1551	54	5	577	5	SIN3A	15	75673982	Missense_Mutation	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10	25	75673982	26857410	43	13229			1	21		2	2	26	T		4.199319e-05
CARHSP1	23589	bcgsc.ca	37	16	8949067	8949067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	8949067	G	A	8949067	3	1	207	1	0	0	0	0	1	0	0	0	2655	1348	47	2	49	2	CARHSP1	16	8949067	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		8949067	81405686	44	13230											
FA2H	79152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74750468	74750468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	C	74750468	G	C	74750468	3	2	207	1	0	0	0	0	1	0	0	0	5356	1165	41	4	310	4	FA2H	16	74750468	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	65801401	74750468	15604285	45	13231											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1630052	1630052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	1630052	C	T	1630052	3	4	207	1	0	0	0	0	1	0	0	0	17342	623	22	2	1863	2	WDR81	17	1630052	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		1630052	79565158	46	13232											
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4445767	4445767	+	Missense_Mutation	SNP	G	G	T	rs200492249	alternate_allele	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	4445767	G	T	4445767	3	4	207	1	0	0	0	0	1	0	0	0	10015	1116	39	4	967	4	MYBBP1A	17	4445767	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	2815715	4445767	76749443	47	13233											
NDC80	10403	bcgsc.ca	37	18	2585121	2585121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	2585121	G	T	2585121	3	4	207	1	0	0	0	0	1	0	0	0	10249	1319	46	4	611	4	NDC80	18	2585121	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		2585121	75492127	48	13234											
SHC2	25759	ucsc.edu;bcgsc.ca	37	19	422299	422299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	422299	G	T	422299	3	4	207	1	0	0	0	0	1	0	0	0	14284	1136	40	4	289	4	SHC2	19	422299	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		422299	58706684	49	13235											
ZNF880	400713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52877551	52877551	+	Splice_Site	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	52877551	G	A	52877551	5	1	207	1	0	0	0	0	0	0	1	0	18209	1014	35	2	149	2	ZNF880	19	52877551	Splice_Site	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	52455252	52877551	6251432	50	13236											
PCK1	5105	broad.mit.edu	37	20	56140434	56140434	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	56140434	C	T	56140434	2	4	207	1	0	0	0	0	0	0	0	1	11588	581	21	2		2	PCK1	20	56140434	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		56140434	6885086	51	13237											
TSPYL2	64061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53114044	53114044	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	A	53114044	C	A	53114044	2	1	207	1	0	0	0	0	0	0	0	1	16672	784	28	4		4	TSPYL2	23	53114044	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		53114044	102156516	52	13238											
STAG2	10735	bcgsc.ca	37	X	123185066	123185066	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	T	123185066	C	T	123185066	2	4	207	1	0	0	0	0	0	0	0	1	15255	825	29	2		2	STAG2	23	123185066	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	70071022	123185066	32085494	53	13239											
SNIP1	79753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38005993	38005993	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	38005993	C	G	38005993	3	3	208	1	0	0	0	0	1	0	0	0	14861	739	26	4	507	4	SNIP1	1	38005993	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		38005993	211244628	1	13240											
DBT	1629	ucsc.edu;bcgsc.ca	37	1	100676255	100676255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	100676255	A	G	100676255	3	3	208	1	0	0	0	0	1	0	0	0	4260	449	16	3	452	3	DBT	1	100676255	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	62670262	100676255	148574366	2	13241											
FCGR1B	2210	broad.mit.edu	37	1	120927211	120927212	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	-	120927212	GC	-	120927211	7	5	208	1	0	1	0	1	0	0	0	0	5787	962	34	0	77	0	FCGR1B	1	120927211	Frame_Shift_Del	DEL	GC	TCGA-B1-A654-01A-11D-A31X-10	20250956	120927211	128323410	3	13242											
FCGR1A	2209	broad.mit.edu	37	1	149762998	149762999	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	-	149762999	GC	-	149762998	7	5	208	1	0	1	0	1	0	0	0	0	5786	962	34	0	1072	0	FCGR1A	1	149762998	Frame_Shift_Del	DEL	GC	TCGA-B1-A654-01A-11D-A31X-10	28835787	149762998	99487623	4	13243											
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153926765	153926765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	153926765	A	G	153926765	3	3	208	1	0	0	0	0	1	0	0	0	3902	420	15	3	1725	3	CRTC2	1	153926765	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	4163767	153926765	95323856	5	13244											
C1orf27	54953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186355194	186355194	+	Silent	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	186355194	T	C	186355194	2	2	208	1	0	0	0	0	0	0	0	1	2038	1490	52	3		3	C1orf27	1	186355194	Silent	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	32428429	186355194	62895427	6	13245											
DNAJC27	51277	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25180723	25180723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	25180723	G	T	25180723	3	4	208	1	0	0	0	0	1	0	0	0	4647	1290	45	4	476	4	DNAJC27	2	25180723	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10		25180723	218018650	7	13246											
SLC3A1	6519	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44547379	44547379	+	Silent	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	44547379	A	G	44547379	2	3	208	1	0	0	0	0	0	0	0	1	14639	69	3	3		3	SLC3A1	2	44547379	Silent	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	19366656	44547379	198651994	8	13247											
RGPD3	653489	broad.mit.edu	37	2	107049632	107049632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	107049632	G	A	107049632	3	1	208	1	0	0	0	0	1	0	0	0	13300	1087	38	1	2993	1	RGPD3	2	107049632	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	62502253	107049632	136149741	9	13248											
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128051097	128051097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	128051097	G	T	128051097	3	4	208	1	0	0	0	0	1	0	0	0	5216	1000	35	4	2178	4	ERCC3	2	128051097	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	21001465	128051097	115148276	10	13249											
WDR33	55339	ucsc.edu;bcgsc.ca	37	2	128522273	128522273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	128522273	G	A	128522273	3	1	208	1	0	0	0	0	1	0	0	0	17299	1377	48	2	3732	2	WDR33	2	128522273	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	471176	128522273	114677100	11	13250											
NEB	4703	broad.mit.edu	37	2	152359325	152359325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	152359325	A	T	152359325	3	4	208	1	0	0	0	0	1	0	0	0	10309	330	12	5	1731	5	NEB	2	152359325	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	23837052	152359325	90840048	12	13251											
SSFA2	6744	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182780851	182780851	+	Silent	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	182780851	T	C	182780851	2	2	208	1	0	0	0	0	0	0	0	1	15195	1538	54	3		3	SSFA2	2	182780851	Silent	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	30421526	182780851	60418522	13	13252											
BARD1	580	hgsc.bcm.edu;bcgsc.ca	37	2	215610468	215610468	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	-	215610468	T	-	215610468	7	5	208	1	0	1	0	1	0	0	0	0	1312	1490	52	0	561	0	BARD1	2	215610468	Frame_Shift_Del	DEL	T	TCGA-B1-A654-01A-11D-A31X-10	32829617	215610468	27588905	14	13253											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	383612	383612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	383612	C	A	383612	3	1	208	1	0	0	0	0	1	0	0	0	3351	479	17	4	544	4	CHL1	3	383612	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		383612	197638818	15	13254											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46000087	46000087	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	46000087	G	C	46000087	4	2	208	1	0	0	0	0	0	1	0	0	6132	1024	36	4	848	4	FYCO1	3	46000087	Nonsense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	45616475	46000087	152022343	16	13255											
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	48699894	48699894	+	Silent	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	48699894	G	A	48699894	2	1	208	1	0	0	0	0	0	0	0	1	3225	1074	38	1		1	CELSR3	3	48699894	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	2699807	48699894	149322536	17	13256											
FRMD4B	23150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	69230503	69230503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	69230503	G	A	69230503	3	1	208	1	0	0	0	0	1	0	0	0	6059	1261	44	2	718	2	FRMD4B	3	69230503	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	20530609	69230503	128791927	18	13257											
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	167189524	167189526	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	-	167189526	AAG	-	167189524	7	5	208	1	0	1	0	1	0	0	0	0	14132	1	1	0	1150	0	SERPINI2	3	167189524	In_Frame_Del	DEL	AAG	TCGA-B1-A654-01A-11D-A31X-10	97959021	167189524	30832906	19	13258	167	2									
SERPINI2	5276	bcgsc.ca	37	3	167189527	167189527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	167189527	A	T	167189527	3	4	208	1	0	0	0	0	1	0	0	0	14132	330	12	5	1153	5	SERPINI2	3	167189527	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	3	167189527	30832903	20	13259	167	2									
TP63	8626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	189612036	189612036	+	Silent	SNP	G	G	C	rs148577576	byfrequency;alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	189612036	G	C	189612036	2	2	208	1	0	0	0	0	0	0	0	1	16404	1045	37	4		4	TP63	3	189612036	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	22422509	189612036	8410394	21	13260											
ADD1	118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	2930230	2930232	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	-	2930232	AAG	-	2930230	7	5	208	1	0	1	0	1	0	0	0	0	304	131	5	0	2379	0	ADD1	4	2930230	In_Frame_Del	DEL	AAG	TCGA-B1-A654-01A-11D-A31X-10		2930230	188224046	22	13261											
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	7783233	7783233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	7783233	G	T	7783233	3	4	208	1	0	0	0	0	1	0	0	0	353	1000	35	4	816	4	AFAP1	4	7783233	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	4853003	7783233	183371043	23	13262											
UGT2B17	7367	broad.mit.edu	37	4	69403575	69403575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	69403575	G	T	69403575	3	4	208	1	0	0	0	0	1	0	0	0	16971	1116	39	4	235	4	UGT2B17	4	69403575	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	61620342	69403575	121750701	24	13263											
ANXA10	11199	bcgsc.ca	37	4	169108558	169108558	+	Silent	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	169108558	C	A	169108558	2	1	208	1	0	0	0	0	0	0	0	1	715	903	32	4		4	ANXA10	4	169108558	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	99704983	169108558	22045718	25	13264											
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10992734	10992734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	10992734	C	T	10992734	3	4	208	1	0	0	0	0	1	0	0	0	4022	652	23	1	553	1	CTNND2	5	10992734	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		10992734	169922526	26	13265											
ADAMTS12	81792	broad.mit.edu	37	5	33891915	33891915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	33891915	G	T	33891915	3	4	208	1	0	0	0	0	1	0	0	0	257	971	34	4	4833	4	ADAMTS12	5	33891915	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	22899181	33891915	147023345	27	13266											
PCDHGC5	56097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140870632	140870633	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	140870633	-	T	140870632	7	5	208	1	0	1	1	0	0	0	0	0	11578	564	20	0	1827	0	PCDHGC5	5	140870632	Frame_Shift_Ins	INS	-	TCGA-B1-A654-01A-11D-A31X-10	106978717	140870632	40044628	28	13267											
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	145547749	145547751	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	-	145547751	TCC	-	145547749	7	5	208	1	0	1	0	1	0	0	0	0	8641	1783	62	0	3268	0	LARS	5	145547749	In_Frame_Del	DEL	TCC	TCGA-B1-A654-01A-11D-A31X-10	4677117	145547749	35367511	29	13268											
BPHL	670	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	3137663	3137663	+	Silent	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	3137663	C	T	3137663	2	4	208	1	0	0	0	0	0	0	0	1	1491	564	20	2		2	BPHL	6	3137663	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		3137663	167977404	30	13269											
PHACTR1	221692	bcgsc.ca	37	6	13228185	13228185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	13228185	A	G	13228185	3	3	208	1	0	0	0	0	1	0	0	0	11816	101	4	3	1150	3	PHACTR1	6	13228185	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	10090522	13228185	157886882	31	13270											
SYNE1	23345	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152453307	152453307	+	Missense_Mutation	SNP	C	C	A	rs201664645	alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	152453307	C	A	152453307	3	1	208	1	0	0	0	0	1	0	0	0	15457	681	24	4	361	4	SYNE1	6	152453307	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	139225122	152453307	18661760	32	13271											
MEOX2	4223	hgsc.bcm.edu	37	7	15725800	15725800	+	Silent	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	15725800	G	A	15725800	2	1	208	1	0	0	0	0	0	0	0	1	9481	1252	44	2		2	MEOX2	7	15725800	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10		15725800	143412863	33	13272											
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	24784199	24784199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	24784199	A	T	24784199	3	4	208	1	0	0	0	0	1	0	0	0	4456	333	12	5	1136	5	DFNA5	7	24784199	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	9058399	24784199	134354464	34	13273											
HOXA9	3205	broad.mit.edu;bcgsc.ca	37	7	27203455	27203455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	27203455	G	T	27203455	3	4	208	1	0	0	0	0	1	0	0	0	7305	1232	43	4	236	4	HOXA9	7	27203455	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	2419256	27203455	131935208	35	13274											
HECW1	23072	broad.mit.edu;bcgsc.ca	37	7	43490498	43490498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	43490498	T	C	43490498	3	2	208	1	0	0	0	0	1	0	0	0	7049	1522	53	3	2508	3	HECW1	7	43490498	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	16287043	43490498	115648165	36	13275											
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75615290	75615290	+	Silent	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	75615290	T	C	75615290	2	2	208	1	0	0	0	0	0	0	0	1	12264	1461	51	3		3	POR	7	75615290	Silent	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	32124792	75615290	83523373	37	13276											
MET	4233	ucsc.edu;bcgsc.ca	37	7	116423413	116423413	+	Missense_Mutation	SNP	T	T	C	rs121913247		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	116423413	T	C	116423413	3	2	208	1	0	0	0	0	1	0	0	0	9492	1638	57	3	3812	3	MET	7	116423413	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	40808123	116423413	42715250	38	13277											
POT1	25913	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	124503439	124503439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	124503439	T	C	124503439	3	2	208	1	0	0	0	0	1	0	0	0	12267	1821	63	3	1441	3	POT1	7	124503439	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	8080026	124503439	34635224	39	13278											
MLL3	58508	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151884405	151884405	+	Silent	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	151884405	A	T	151884405	2	4	208	1	0	0	0	0	0	0	0	1	9629	175	7	5		5	MLL3	7	151884405	Silent	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	27380966	151884405	7254258	40	13279											
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11705226	11705226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	11705226	G	T	11705226	3	4	208	1	0	0	0	0	1	0	0	0	4032	1000	35	4	397	4	CTSB	8	11705226	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10		11705226	134658796	41	13280											
TRPA1	8989	ucsc.edu	37	8	72958841	72958841	+	Silent	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	72958841	G	A	72958841	2	1	208	1	0	0	0	0	0	0	0	1	16589	1048	37	1		1	TRPA1	8	72958841	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	61253615	72958841	73405181	42	13281											
LRRCC1	85444	ucsc.edu;bcgsc.ca	37	8	86027335	86027335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	86027335	G	A	86027335	3	1	208	1	0	0	0	0	1	0	0	0	9033	1246	43	2	563	2	LRRCC1	8	86027335	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	13068494	86027335	60336687	43	13282											
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	88885869	88885869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	88885869	C	G	88885869	3	3	208	1	0	0	0	0	1	0	0	0	4274	835	29	4	860	4	DCAF4L2	8	88885869	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	2858534	88885869	57478153	44	13283											
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110488892	110488892	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	110488892	C	G	110488892	4	3	208	1	0	0	0	0	0	1	0	0	11979	576	20	4	9119	4	PKHD1L1	8	110488892	Nonsense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	21603023	110488892	35875130	45	13284											
PHYHIPL	84457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	60936661	60936661	+	Silent	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	60936661	C	A	60936661	2	1	208	1	0	0	0	0	0	0	0	1	11874	668	24	4		4	PHYHIPL	10	60936661	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		60936661	74598086	46	13285											
INSC	387755	broad.mit.edu;bcgsc.ca	37	11	15197495	15197495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	15197495	C	A	15197495	3	1	208	1	0	0	0	0	1	0	0	0	7771	768	27	4	416	4	INSC	11	15197495	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		15197495	119809021	47	13286											
MRPL11	65003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66204727	66204727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	66204727	C	G	66204727	3	3	208	1	0	0	0	0	1	0	0	0	9783	680	24	4	342	4	MRPL11	11	66204727	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	51007232	66204727	68801789	48	13287											
MTL5	9633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	68518126	68518126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	68518126	C	A	68518126	3	1	208	1	0	0	0	0	1	0	0	0	9943	594	21	4	1563	4	MTL5	11	68518126	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	2313399	68518126	66488390	49	13288											
P2RY6	5031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73007583	73007583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	73007583	C	A	73007583	3	1	208	1	0	0	0	0	1	0	0	0	11361	478	17	4	22	4	P2RY6	11	73007583	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	4489457	73007583	61998933	50	13289											
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	95825407	C	T	95825407	2	4	208	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825407	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	22817824	95825407	39181109	51	13290											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64377795	64377795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	64377795	C	T	64377795	3	4	208	1	0	0	0	0	1	0	0	0	15157	913	32	2	142	2	SRGAP1	12	64377795	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		64377795	69474100	52	13291											
SCYL2	55681	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100731225	100731225	+	Silent	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	100731225	C	T	100731225	2	4	208	1	0	0	0	0	0	0	0	1	13961	796	28	2		2	SCYL2	12	100731225	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	36353430	100731225	33120670	53	13292											
ARL1	400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101799660	101799660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	101799660	T	C	101799660	3	2	208	1	0	0	0	0	1	0	0	0	925	1638	57	3	461	3	ARL1	12	101799660	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	1068435	101799660	32052235	54	13293											
USP30	84749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	109490532	109490532	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	109490532	A	T	109490532	3	4	208	1	0	0	0	0	1	0	0	0	17073	217	8	5	51	5	USP30	12	109490532	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	7690872	109490532	24361363	55	13294											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32972588	32972588	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	32972588	A	C	32972588	3	2	208	1	0	0	0	0	1	0	0	0	1501	72	3	5	10040	5	BRCA2	13	32972588	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10		32972588	82197290	56	13295											
SPRY2	10253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	80911824	80911824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	80911824	T	C	80911824	3	2	208	1	0	0	0	0	1	0	0	0	15118	1580	55	3	934	3	SPRY2	13	80911824	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	47939236	80911824	34258054	57	13296											
ITPK1	3705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	93408247	93408247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	93408247	A	T	93408247	3	4	208	1	0	0	0	0	1	0	0	0	7923	420	15	5	392	5	ITPK1	14	93408247	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10		93408247	13941293	58	13297											
HSP90AA1	3320	broad.mit.edu;ucsc.edu	37	14	102548766	102548766	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	102548766	G	A	102548766	4	1	208	1	0	0	0	0	0	1	0	0	7408	1124	39	1	435	1	HSP90AA1	14	102548766	Nonsense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	9140519	102548766	4800774	59	13298											
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102675840	102675840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	102675840	A	G	102675840	3	3	208	1	0	0	0	0	1	0	0	0	17292	188	7	3	1360	3	WDR20	14	102675840	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	127074	102675840	4673700	60	13299											
GLCE	26035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	69548696	69548696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	69548696	T	C	69548696	3	2	208	1	0	0	0	0	1	0	0	0	6439	1667	58	3	553	3	GLCE	15	69548696	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10		69548696	32982696	61	13300											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72190184	72190184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	72190184	C	G	72190184	3	3	208	1	0	0	0	0	1	0	0	0	10091	565	20	4	3058	4	MYO9A	15	72190184	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	2641488	72190184	30341208	62	13301											
TMEM202	338949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72698982	72698982	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	72698982	T	A	72698982	3	1	208	1	0	0	0	0	1	0	0	0	16139	1667	58	5	387	5	TMEM202	15	72698982	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	508798	72698982	29832410	63	13302											
SCAMP5	192683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75309011	75309011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	75309011	G	T	75309011	3	4	208	1	0	0	0	0	1	0	0	0	13887	1348	47	4	224	4	SCAMP5	15	75309011	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	2610029	75309011	27222381	64	13303											
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2014483	2014484	+	In_Frame_Ins	INS	-	-	CGGCCT	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	CGGCCT	2014484	-	CGGCCT	2014483	7	5	208	1	0	1	1	0	0	0	0	0	13644	1074	38	0	761	0	RPS2	16	2014483	In_Frame_Ins	INS	-	TCGA-B1-A654-01A-11D-A31X-10		2014483	88340270	65	13304											
SMG1	23049	broad.mit.edu	37	16	18864921	18864921	+	Silent	SNP	G	G	T	rs188559863	byfrequency;alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	18864921	G	T	18864921	2	4	208	1	0	0	0	0	0	0	0	1	14808	1048	37	4		4	SMG1	16	18864921	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	16850438	18864921	71489832	66	13305											
ITGAD	3681	broad.mit.edu;bcgsc.ca	37	16	31414858	31414858	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	C	31414858	A	C	31414858	3	2	208	1	0	0	0	0	1	0	0	0	7891	159	6	5	622	5	ITGAD	16	31414858	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	12549937	31414858	58939895	67	13306											
LCAT	3931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67976796	67976796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	67976796	G	T	67976796	3	4	208	1	0	0	0	0	1	0	0	0	8665	942	33	4	943	4	LCAT	16	67976796	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	36561938	67976796	22377957	68	13307											
BCL6B	255877	hgsc.bcm.edu	37	17	6928020	6928031	+	In_Frame_Del	DEL	CAGCAGCAGCAG	CAGCAGCAGCAG	-	rs66978918	alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	CAGCAGCAGCAG	CAGCAGCAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	-	6928031	CAGCAGCAGCAG	-	6928020	7	5	208	1	0	1	0	1	0	0	0	0	1377	581	21	0	712	0	BCL6B	17	6928020	In_Frame_Del	DEL	CAGCAGCAGCAG	TCGA-B1-A654-01A-11D-A31X-10		6928020	74267190	69	13308											
FAM134C	162427	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40734802	40734802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	40734802	C	A	40734802	3	1	208	1	0	0	0	0	1	0	0	0	5451	681	24	4	575	4	FAM134C	17	40734802	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	33806782	40734802	40460408	70	13309											
HEXIM1	10614	broad.mit.edu	37	17	43226748	43226748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	43226748	A	G	43226748	3	3	208	1	0	0	0	0	1	0	0	0	7083	246	9	3	193	3	HEXIM1	17	43226748	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	2491946	43226748	37968462	71	13310											
PPP1R9B	84687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48221032	48221032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	48221032	A	G	48221032	3	3	208	1	0	0	0	0	1	0	0	0	12389	217	8	3	929	3	PPP1R9B	17	48221032	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	4994284	48221032	32974178	72	13311											
TMEM104	54868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72781730	72781730	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	72781730	T	A	72781730	3	1	208	1	0	0	0	0	1	0	0	0	16030	1580	55	5	161	5	TMEM104	17	72781730	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	24560698	72781730	8413480	73	13312											
ACSBG2	81616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6165945	6165945	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	-	6165945	G	-	6165945	7	5	208	1	0	1	0	1	0	0	0	0	174	933	33	0	679	0	ACSBG2	19	6165945	Frame_Shift_Del	DEL	G	TCGA-B1-A654-01A-11D-A31X-10		6165945	52963038	74	13313											
ACER1	125981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6312214	6312214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	6312214	C	T	6312214	3	4	208	1	0	0	0	0	1	0	0	0	138	739	26	2	514	2	ACER1	19	6312214	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	146269	6312214	52816769	75	13314											
SNRNP70	6625	ucsc.edu	37	19	49604725	49604725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	49604725	C	T	49604725	3	4	208	1	0	0	0	0	1	0	0	0	14871	710	25	2	494	2	SNRNP70	19	49604725	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	43292511	49604725	9524258	76	13315											
UBE2S	27338	broad.mit.edu	37	19	55913035	55913035	+	Silent	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	G	55913035	A	G	55913035	2	3	208	1	0	0	0	0	0	0	0	1	16884	291	11	3		3	UBE2S	19	55913035	Silent	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	6308310	55913035	3215948	77	13316											
ZNF71	58491	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57133380	57133380	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	57133380	A	T	57133380	3	4	208	1	0	0	0	0	1	0	0	0	18126	391	14	5	727	5	ZNF71	19	57133380	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	1220345	57133380	1995603	78	13317											
C21orf2	755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45750162	45750162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	45750162	C	A	45750162	3	1	208	1	0	0	0	0	1	0	0	0	2125	680	24	4	84	4	C21orf2	21	45750162	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		45750162	2379733	79	13318											
MN1	4330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	28192976	28192976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	28192976	C	T	28192976	3	4	208	1	0	0	0	0	1	0	0	0	9680	768	27	1	414	1	MN1	22	28192976	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		28192976	23111590	80	13319											
CSNK1E	1454	ucsc.edu	37	22	38690182	38690182	+	Missense_Mutation	SNP	G	G	A	rs200745813		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	38690182	G	A	38690182	3	1	208	1	0	0	0	0	1	0	0	0	3955	1087	38	1	107	1	CSNK1E	22	38690182	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	10497206	38690182	12614384	81	13320											
OTC	5009	broad.mit.edu	37	X	38260574	38260574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	38260574	C	A	38260574	3	1	208	1	0	0	0	0	1	0	0	0	11308	479	17	4	451	4	OTC	23	38260574	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		38260574	117009986	82	13321											
MID1IP1	58526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	38664368	38664368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	38664368	G	T	38664368	3	4	208	1	0	0	0	0	1	0	0	0	9584	1000	35	4	171	4	MID1IP1	23	38664368	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	403794	38664368	116606192	83	13322											
RPA4	29935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	96139635	96139635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	A	96139635	G	A	96139635	3	1	208	1	0	0	0	0	1	0	0	0	13552	1261	44	2	328	2	RPA4	23	96139635	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	57475267	96139635	59130925	84	13323											
RBMX2	51634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	129546641	129546641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	T	129546641	A	T	129546641	3	4	208	1	0	0	0	0	1	0	0	0	13165	72	3	5	810	5	RBMX2	23	129546641	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	33407006	129546641	25723919	85	13324											
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17318334	17318334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	17318334	G	T	17318334	3	4	209	1	0	0	0	0	1	0	0	0	1124	991	35	4	1672	4	ATP13A2	1	17318334	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10		17318334	231932287	1	13325											
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21936724	21936724	+	Silent	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	21936724	G	C	21936724	2	2	209	1	0	0	0	0	0	0	0	1	13050	929	33	4		4	RAP1GAP	1	21936724	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	4618390	21936724	227313897	2	13326											
CSF3R	1441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	36939407	36939408	+	In_Frame_Ins	INS	-	-	GTC	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	GTC	36939408	-	GTC	36939407	7	5	209	1	0	1	1	0	0	0	0	0	3939	1000	35	0	2309	0	CSF3R	1	36939407	In_Frame_Ins	INS	-	TCGA-B1-A655-01A-11D-A31Z-10	15002683	36939407	212311214	3	13327											
RPS8	6202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45242407	45242407	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	45242407	C	G	45242407	3	3	209	1	0	0	0	0	1	0	0	0	13674	680	24	4	182	4	RPS8	1	45242407	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	8303000	45242407	204008214	4	13328											
CYP4X1	260293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47489659	47489659	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	47489659	A	-	47489659	7	5	209	1	0	1	0	1	0	0	0	0	4195	159	6	0	172	0	CYP4X1	1	47489659	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	2247252	47489659	201760962	5	13329											
SSBP3	23648	bcgsc.ca	37	1	54707864	54707864	+	Silent	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	54707864	G	T	54707864	2	4	209	1	0	0	0	0	0	0	0	1	15193	987	35	4		4	SSBP3	1	54707864	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	7218205	54707864	194542757	6	13330											
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115221050	115221050	+	Silent	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	115221050	A	G	115221050	2	3	209	1	0	0	0	0	0	0	0	1	585	456	16	3		3	AMPD1	1	115221050	Silent	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	60513186	115221050	134029571	7	13331											
RPTN	126638	broad.mit.edu	37	1	152128065	152128065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	152128065	C	T	152128065	3	4	209	1	0	0	0	0	1	0	0	0	13677	661	23	1	848	1	RPTN	1	152128065	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	36907015	152128065	97122556	8	13332											
DDR2	4921	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	162724591	162724591	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	162724591	T	G	162724591	3	3	209	1	0	0	0	0	1	0	0	0	4339	1490	52	5	373	5	DDR2	1	162724591	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	10596526	162724591	86526030	9	13333											
HMCN1	83872	broad.mit.edu	37	1	185953350	185953350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	185953350	T	G	185953350	3	3	209	1	0	0	0	0	1	0	0	0	7227	1493	52	5	2914	5	HMCN1	1	185953350	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	23228759	185953350	63297271	10	13334											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1805513	1805513	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	1805513	T	C	1805513	2	2	209	1	0	0	0	0	0	0	0	1	10114	1490	52	3		3	MYT1L	2	1805513	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		1805513	241393860	11	13335											
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17896324	17896324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	17896324	T	A	17896324	3	1	209	1	0	0	0	0	1	0	0	0	14800	1464	51	5	1793	5	SMC6	2	17896324	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	16090811	17896324	225303049	12	13336											
RHOB	388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20647312	20647312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	20647312	A	G	20647312	3	3	209	1	0	0	0	0	1	0	0	0	13345	304	11	3	88	3	RHOB	2	20647312	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	2750988	20647312	222552061	13	13337											
SLC5A6	8884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27427730	27427730	+	Silent	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	27427730	G	C	27427730	2	2	209	1	0	0	0	0	0	0	0	1	14682	929	33	4		4	SLC5A6	2	27427730	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	6780418	27427730	215771643	14	13338											
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	55806886	55806886	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	55806886	A	-	55806886	7	5	209	1	0	1	0	1	0	0	0	0	14807	246	9	0	1188	0	SMEK2	2	55806886	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	28379156	55806886	187392487	15	13339											
INO80B	83444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74684908	74684908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	74684908	T	A	74684908	3	1	209	1	0	0	0	0	1	0	0	0	7754	1580	55	5	1006	5	INO80B	2	74684908	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	18878022	74684908	168514465	16	13340											
RPIA	22934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	89037541	89037541	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	89037541	T	G	89037541	3	3	209	1	0	0	0	0	1	0	0	0	13566	1809	63	5	816	5	RPIA	2	89037541	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	14352633	89037541	154161832	17	13341											
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97368368	97368368	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	97368368	A	C	97368368	3	2	209	1	0	0	0	0	1	0	0	0	5821	247	9	5	5581	5	FER1L5	2	97368368	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	8330827	97368368	145831005	18	13342											
LONRF2	164832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	100903452	100903452	+	Missense_Mutation	SNP	G	G	A	rs182810197		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	100903452	G	A	100903452	3	1	209	1	0	0	0	0	1	0	0	0	8902	1087	38	1	278	1	LONRF2	2	100903452	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	3535084	100903452	142295921	19	13343											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168108259	168108259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	168108259	C	T	168108259	3	4	209	1	0	0	0	0	1	0	0	0	17442	710	25	2	10387	2	XIRP2	2	168108259	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	67204807	168108259	75091114	20	13344											
SLC25A12	8604	broad.mit.edu;bcgsc.ca	37	2	172700922	172700937	+	Frame_Shift_Del	DEL	CGGTTATGCCCAAAAT	CGGTTATGCCCAAAAT	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	CGGTTATGCCCAAAAT	CGGTTATGCCCAAAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	172700937	CGGTTATGCCCAAAAT	-	172700922	7	5	209	1	0	1	0	1	0	0	0	0	14487	652	23	0	1670	0	SLC25A12	2	172700922	Frame_Shift_Del	DEL	CGGTTATGCCCAAAAT	TCGA-B1-A655-01A-11D-A31Z-10	4592663	172700922	70498451	21	13345											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179577514	179577514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	179577514	C	T	179577514	3	4	209	1	0	0	0	0	1	0	0	0	16747	884	31	1	77367	1	TTN	2	179577514	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	6876592	179577514	63621859	22	13346											
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207655323	207655323	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	207655323	T	C	207655323	2	2	209	1	0	0	0	0	0	0	0	1	5693	1567	55	3		3	FASTKD2	2	207655323	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	28077809	207655323	35544050	23	13347											
LRRFIP1	9208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	238666100	238666100	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	238666100	A	T	238666100	3	4	209	1	0	0	0	0	1	0	0	0	9034	260	9	5	1269	5	LRRFIP1	2	238666100	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	31010777	238666100	4533273	24	13348											
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	51452313	51452313	+	Splice_Site	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	51452313	T	G	51452313	5	3	209	1	0	0	0	0	0	0	1	0	17197	1623	56	5	949	5	VPRBP	3	51452313	Splice_Site	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		51452313	146570117	25	13349											
FLNB	2317	broad.mit.edu	37	3	58121740	58121740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	58121740	A	G	58121740	3	3	209	1	0	0	0	0	1	0	0	0	5941	217	8	3	4913	3	FLNB	3	58121740	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	6669427	58121740	139900690	26	13350											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154858036	154858036	+	Silent	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	154858036	A	G	154858036	2	3	209	1	0	0	0	0	0	0	0	1	9652	204	8	3		3	MME	3	154858036	Silent	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	96736296	154858036	43164394	27	13351											
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	7811366	7811366	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	7811366	T	C	7811366	2	2	209	1	0	0	0	0	0	0	0	1	353	1567	55	3		3	AFAP1	4	7811366	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		7811366	183342910	28	13352											
GUF1	60558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	44688034	44688034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	44688034	T	C	44688034	3	2	209	1	0	0	0	0	1	0	0	0	6906	1435	50	3	754	3	GUF1	4	44688034	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	36876668	44688034	146466242	29	13353											
PKD2	5311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88996109	88996109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	88996109	G	C	88996109	3	2	209	1	0	0	0	0	1	0	0	0	11973	1059	37	4	2722	4	PKD2	4	88996109	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	44308075	88996109	102158167	30	13354											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13839483	13839483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	13839483	A	C	13839483	3	2	209	1	0	0	0	0	1	0	0	0	4606	449	16	5	8190	5	DNAH5	5	13839483	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10		13839483	167075777	31	13355											
AMACR	23600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33998825	33998825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	33998825	A	G	33998825	3	3	209	1	0	0	0	0	1	0	0	0	562	459	16	3	826	3	AMACR	5	33998825	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	20159342	33998825	146916435	32	13356											
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	64766709	64766709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	64766709	C	T	64766709	3	4	209	1	0	0	0	0	1	0	0	0	270	603	21	2	3087	2	ADAMTS6	5	64766709	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	30767884	64766709	116148551	33	13357											
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140745640	140745640	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	140745640	C	T	140745640	2	4	209	1	0	0	0	0	0	0	0	1	11564	639	23	1		1	PCDHGA5	5	140745640	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	75978931	140745640	40169620	34	13358											
UBTD2	92181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	171661228	171661228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	171661228	C	T	171661228	3	4	209	1	0	0	0	0	1	0	0	0	16920	922	32	2	507	2	UBTD2	5	171661228	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	30915588	171661228	9254032	35	13359											
RGS14	10636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176798989	176798989	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	176798989	C	T	176798989	2	4	209	1	0	0	0	0	0	0	0	1	13310	581	21	2		2	RGS14	5	176798989	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	5137761	176798989	4116271	36	13360											
HIST1H2BJ	8970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27100264	27100264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	27100264	G	A	27100264	3	1	209	1	0	0	0	0	1	0	0	0	7156	1261	44	2	118	2	HIST1H2BJ	6	27100264	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10		27100264	144014803	37	13361											
KCNK16	83795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39285639	39285639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	39285639	G	T	39285639	3	4	209	1	0	0	0	0	1	0	0	0	8070	1000	35	4	912	4	KCNK16	6	39285639	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	12185375	39285639	131829428	38	13362											
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	6	57467163	57467163	+	Silent	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	57467163	G	C	57467163	2	2	209	1	0	0	0	0	0	0	0	1	12501	1277	45	4		4	PRIM2	6	57467163	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	18181524	57467163	113647904	39	13363											
PRSS35	167681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84233613	84233613	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	84233613	C	T	84233613	2	4	209	1	0	0	0	0	0	0	0	1	12634	581	21	2		2	PRSS35	6	84233613	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	26766450	84233613	86881454	40	13364											
ENPP3	5169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132059234	132059234	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	132059234	A	C	132059234	3	2	209	1	0	0	0	0	1	0	0	0	5133	101	4	5	2321	5	ENPP3	6	132059234	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	47825621	132059234	39055833	41	13365											
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	158358486	158358486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	158358486	C	A	158358486	3	1	209	1	0	0	0	0	1	0	0	0	14922	854	30	4	1522	4	SNX9	6	158358486	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	26299252	158358486	12756581	42	13366											
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	12680013	12680013	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	12680013	T	-	12680013	7	5	209	1	0	1	0	1	0	0	0	0	13918	1722	60	0	1494	0	SCIN	7	12680013	Frame_Shift_Del	DEL	T	TCGA-B1-A655-01A-11D-A31Z-10		12680013	146458650	43	13367											
POU6F2	11281	broad.mit.edu;bcgsc.ca	37	7	39504216	39504216	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	39504216	A	-	39504216	7	5	209	1	0	1	0	1	0	0	0	0	12292	359	13	0	2045	0	POU6F2	7	39504216	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	26824203	39504216	119634447	44	13368											
GCK	2645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44185276	44185276	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	44185276	C	G	44185276	3	3	209	1	0	0	0	0	1	0	0	0	6300	884	31	4	332	4	GCK	7	44185276	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	4681060	44185276	114953387	45	13369											
POM121C	100101267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	75070316	75070316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	75070316	A	C	75070316	3	2	209	1	0	0	0	0	1	0	0	0	12247	188	7	5	2864	5	POM121C	7	75070316	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	30885040	75070316	84068347	46	13370											
ZAN	7455	ucsc.edu	37	7	100349991	100349991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	100349991	T	C	100349991	3	2	209	1	0	0	0	0	1	0	0	0	17525	1551	54	3	2313	3	ZAN	7	100349991	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	25279675	100349991	58788672	47	13371											
ATP6V0A4	50617	broad.mit.edu	37	7	138394418	138394418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	138394418	G	T	138394418	3	4	209	1	0	0	0	0	1	0	0	0	1170	933	33	4	150	4	ATP6V0A4	7	138394418	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	38044427	138394418	20744245	48	13372											
DPP6	1804	broad.mit.edu	37	7	153750140	153750140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	153750140	G	A	153750140	3	1	209	1	0	0	0	0	1	0	0	0	4732	1059	37	1	292	1	DPP6	7	153750140	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	15355722	153750140	5388523	49	13373											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2020508	2020508	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	2020508	G	C	2020508	3	2	209	1	0	0	0	0	1	0	0	0	10099	1059	37	4	907	4	MYOM2	8	2020508	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10		2020508	144343514	50	13374											
LOXL2	4017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	23198538	23198538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	23198538	G	A	23198538	3	1	209	1	0	0	0	0	1	0	0	0	8907	1000	35	2	1658	2	LOXL2	8	23198538	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	21178030	23198538	123165484	51	13375											
EXOSC4	54512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145134932	145134932	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	145134932	C	T	145134932	2	4	209	1	0	0	0	0	0	0	0	1	5319	697	25	2		2	EXOSC4	8	145134932	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	121936394	145134932	1229090	52	13376											
SLC39A4	55630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145640398	145640398	+	Missense_Mutation	SNP	G	G	T	rs200044971	alternate_allele	TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	145640398	G	T	145640398	3	4	209	1	0	0	0	0	1	0	0	0	14633	1232	43	4	1215	4	SLC39A4	8	145640398	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	505466	145640398	723624	53	13377											
TTC39B	158219	broad.mit.edu	37	9	15190552	15190552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	15190552	C	G	15190552	3	3	209	1	0	0	0	0	1	0	0	0	16720	608	21	4	1004	4	TTC39B	9	15190552	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		15190552	126022879	54	13378											
TLN1	7094	broad.mit.edu;bcgsc.ca	37	9	35698339	35698339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	35698339	T	G	35698339	3	3	209	1	0	0	0	0	1	0	0	0	15959	1551	54	5	285	5	TLN1	9	35698339	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	20507787	35698339	105515092	55	13379											
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35792786	35792786	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	35792786	T	C	35792786	2	2	209	1	0	0	0	0	0	0	0	1	10602	1567	55	3		3	NPR2	9	35792786	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	94447	35792786	105420645	56	13380											
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35800822	35800822	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	35800822	C	-	35800822	7	5	209	1	0	1	0	1	0	0	0	0	10602	506	18	0	1357	0	NPR2	9	35800822	Frame_Shift_Del	DEL	C	TCGA-B1-A655-01A-11D-A31Z-10	8036	35800822	105412609	57	13381											
OR1N2	138882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125315955	125315955	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	125315955	C	T	125315955	2	4	209	1	0	0	0	0	0	0	0	1	10977	581	21	2		2	OR1N2	9	125315955	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	89515133	125315955	15897476	58	13382											
MED27	9442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134889753	134889753	+	Silent	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	134889753	A	G	134889753	2	3	209	1	0	0	0	0	0	0	0	1	9452	291	11	3		3	MED27	9	134889753	Silent	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	9573798	134889753	6323678	59	13383											
GJD4	219770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	35896876	35896876	+	Silent	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	35896876	C	A	35896876	2	1	209	1	0	0	0	0	0	0	0	1	6426	845	30	4		4	GJD4	10	35896876	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		35896876	99637871	60	13384											
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72513573	72513573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	72513573	G	T	72513573	3	4	209	1	0	0	0	0	1	0	0	0	259	1357	47	4	2830	4	ADAMTS14	10	72513573	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	36616697	72513573	63021174	61	13385											
C10orf11	83938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	77818509	77818509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	77818509	A	G	77818509	3	3	209	1	0	0	0	0	1	0	0	0	1584	180	7	3	414	3	C10orf11	10	77818509	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	5304936	77818509	57716238	62	13386											
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98744160	98744160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	98744160	A	C	98744160	3	2	209	1	0	0	0	0	1	0	0	0	1591	130	5	5	3015	5	C10orf12	10	98744160	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	20925651	98744160	36790587	63	13387											
ERLIN1	10613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101935785	101935785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	101935785	G	C	101935785	3	2	209	1	0	0	0	0	1	0	0	0	5234	1261	44	4	727	4	ERLIN1	10	101935785	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	3191625	101935785	33598962	64	13388											
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128830577	128830577	+	Silent	SNP	T	T	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	128830577	T	A	128830577	2	1	209	1	0	0	0	0	0	0	0	1	4686	1538	54	5		5	DOCK1	10	128830577	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	26894792	128830577	6704170	65	13389											
MUC2	4583	broad.mit.edu	37	11	1092973	1092973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	1092973	C	T	1092973	3	4	209	1	0	0	0	0	1	0	0	0	9982	507	18	2	4910	2	MUC2	11	1092973	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		1092973	133913543	66	13390											
KRTAP5-5	439915	bcgsc.ca	37	11	1651127	1651127	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	1651127	C	T	1651127	2	4	209	1	0	0	0	0	0	0	0	1	8571	639	23	1		1	KRTAP5-5	11	1651127	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	558154	1651127	133355389	67	13391											
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33374883	33374883	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	33374883	T	C	33374883	2	2	209	1	0	0	0	0	0	0	0	1	7125	1538	54	3		3	HIPK3	11	33374883	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	31723756	33374883	101631633	68	13392											
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65397996	65397996	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	65397996	A	C	65397996	3	2	209	1	0	0	0	0	1	0	0	0	11600	449	16	5	4497	5	PCNXL3	11	65397996	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	32023113	65397996	69608520	69	13393											
MRE11A	4361	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	94225958	94225958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	94225958	C	A	94225958	3	1	209	1	0	0	0	0	1	0	0	0	9766	710	25	4	2192	4	MRE11A	11	94225958	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	28827962	94225958	40780558	70	13394											
PVRL1	5818	broad.mit.edu	37	11	119545966	119545968	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	119545968	GAA	-	119545966	7	5	209	1	0	1	0	1	0	0	0	0	12852	1281	45	0	1101	0	PVRL1	11	119545966	In_Frame_Del	DEL	GAA	TCGA-B1-A655-01A-11D-A31Z-10	25320008	119545966	15460550	71	13395											
ASB8	140461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48543736	48543736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	48543736	C	T	48543736	3	4	209	1	0	0	0	0	1	0	0	0	1029	797	28	2	590	2	ASB8	12	48543736	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		48543736	85308159	72	13396											
GALNT6	11226	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	51758036	51758036	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	51758036	A	-	51758036	7	5	209	1	0	1	0	1	0	0	0	0	6224	127	5	0	978	0	GALNT6	12	51758036	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	3214300	51758036	82093859	73	13397											
PARP4	143	ucsc.edu	37	13	25020900	25020900	+	Splice_Site	SNP	C	C	T	rs1802322		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	25020900	C	T	25020900	5	4	209	1	0	0	0	0	0	0	1	0	11470	695	24	2	1921	2	PARP4	13	25020900	Splice_Site	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		25020900	90148978	74	13398											
ARHGAP5	394	hgsc.bcm.edu;bcgsc.ca	37	14	32560648	32560648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	32560648	A	-	32560648	7	5	209	1	0	1	0	1	0	0	0	0	886	449	16	0	775	0	ARHGAP5	14	32560648	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10		32560648	74788892	75	13399											
RGS6	9628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	72939649	72939649	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	72939649	C	-	72939649	7	5	209	1	0	1	0	1	0	0	0	0	13322	842	30	0	636	0	RGS6	14	72939649	Frame_Shift_Del	DEL	C	TCGA-B1-A655-01A-11D-A31Z-10	40379001	72939649	34409891	76	13400											
SERPINA12	145264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94964196	94964196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	94964196	A	C	94964196	3	2	209	1	0	0	0	0	1	0	0	0	14102	14	1	5	721	5	SERPINA12	14	94964196	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	22024547	94964196	12385344	77	13401											
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	38798102	38798102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	38798102	T	C	38798102	3	2	209	1	0	0	0	0	1	0	0	0	13087	1638	57	3	1163	3	RASGRP1	15	38798102	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		38798102	63733290	78	13402											
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40660678	40660678	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	40660678	C	G	40660678	3	3	209	1	0	0	0	0	1	0	0	0	4542	623	22	4	2395	4	DISP2	15	40660678	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	1862576	40660678	61870714	79	13403											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42005518	42005518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	42005518	G	C	42005518	3	2	209	1	0	0	0	0	1	0	0	0	9547	942	33	4	3284	4	MGA	15	42005518	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	1344840	42005518	60525874	80	13404											
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49074426	49074426	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	49074426	C	-	49074426	7	5	209	1	0	1	0	1	0	0	0	0	3250	521	18	0	3705	0	CEP152	15	49074426	Frame_Shift_Del	DEL	C	TCGA-B1-A655-01A-11D-A31Z-10	7068908	49074426	53456966	81	13405											
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85400827	85400827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	85400827	A	T	85400827	3	4	209	1	0	0	0	0	1	0	0	0	546	275	10	5	3486	5	ALPK3	15	85400827	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	36326401	85400827	17130565	82	13406											
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1268594	1268594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	1268594	C	A	1268594	3	1	209	1	0	0	0	0	1	0	0	0	2547	594	21	4	5956	4	CACNA1H	16	1268594	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		1268594	89086159	83	13407											
BFAR	51283	broad.mit.edu	37	16	14738464	14738464	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	14738464	C	T	14738464	2	4	209	1	0	0	0	0	0	0	0	1	1414	813	29	2		2	BFAR	16	14738464	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	13469870	14738464	75616289	84	13408											
ZKSCAN2	342357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	25266603	25266603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	25266603	C	G	25266603	3	3	209	1	0	0	0	0	1	0	0	0	17699	680	24	4	2417	4	ZKSCAN2	16	25266603	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	10528139	25266603	65088150	85	13409											
CHMP1A	5119	ucsc.edu	37	16	89713674	89713674	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	89713674	C	A	89713674	4	1	209	1	0	0	0	0	0	1	0	0	3354	922	32	4	436	4	CHMP1A	16	89713674	Nonsense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	64447071	89713674	641079	86	13410											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	7578271	T	G	7578271	3	3	209	1	0	0	0	0	1	0	0	0	16393	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		7578271	73616939	87	13411											
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	37814678	37814685	+	Frame_Shift_Del	DEL	TGGCTACC	TGGCTACC	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	TGGCTACC	TGGCTACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	37814685	TGGCTACC	-	37814678	7	5	209	1	0	1	0	1	0	0	0	0	15269	1821	63	0	468	0	STARD3	17	37814678	Frame_Shift_Del	DEL	TGGCTACC	TCGA-B1-A655-01A-11D-A31Z-10	30236407	37814678	43380532	88	13412											
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41203099	41203099	+	Silent	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	41203099	G	A	41203099	2	1	209	1	0	0	0	0	0	0	0	1	1500	987	35	2		2	BRCA1	17	41203099	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	3388421	41203099	39992111	89	13413											
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58121036	58121036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	58121036	G	T	58121036	3	4	209	1	0	0	0	0	1	0	0	0	7040	1348	47	4	115	4	HEATR6	17	58121036	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	16917937	58121036	23074174	90	13414											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	65162707	65162707	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	65162707	T	C	65162707	2	2	209	1	0	0	0	0	0	0	0	1	7056	1490	52	3		3	HELZ	17	65162707	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	7041671	65162707	16032503	91	13415											
FSCN2	25794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79496379	79496379	+	Silent	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	79496379	G	A	79496379	2	1	209	1	0	0	0	0	0	0	0	1	6075	1190	42	2		2	FSCN2	17	79496379	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	14333672	79496379	1698831	92	13416											
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79865647	79865647	+	Splice_Site	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	79865647	A	G	79865647	5	3	209	1	0	0	0	0	0	0	1	0	11619	173	6	3	769	3	PCYT2	17	79865647	Splice_Site	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	369268	79865647	1329563	93	13417											
TXNDC2	84203	broad.mit.edu	37	18	9887670	9887670	+	Silent	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	9887670	A	G	9887670	2	3	209	1	0	0	0	0	0	0	0	1	16809	146	6	3		3	TXNDC2	18	9887670	Silent	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10		9887670	68189578	94	13418			1	22		2	2	12	N	T_A	3.944139e-05
TXNDC2	84203	broad.mit.edu	37	18	9887681	9887681	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	9887681	T	G	9887681	3	3	209	1	0	0	0	0	1	0	0	0	16809	1493	52	5	1211	5	TXNDC2	18	9887681	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	11	9887681	68189567	95	13419			1	22		2	2	12	N	T_A	3.944139e-05
KCNG2	26251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	77659162	77659162	+	Silent	SNP	G	G	A	rs140841838		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	77659162	G	A	77659162	2	1	209	1	0	0	0	0	0	0	0	1	8035	1074	38	1		1	KCNG2	18	77659162	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	67771481	77659162	418086	96	13420											
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10395839	10395839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	10395839	T	A	10395839	3	1	209	1	0	0	0	0	1	0	0	0	7486	1406	49	5	1501	5	ICAM1	19	10395839	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		10395839	48733144	97	13421											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	13418985	13418985	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	13418985	A	-	13418985	7	5	209	1	0	1	0	1	0	0	0	0	2540	246	9	0	5905	0	CACNA1A	19	13418985	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	3023146	13418985	45709998	98	13422											
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu	37	19	39913652	39913652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	A	39913652	G	A	39913652	3	1	209	1	0	0	0	0	1	0	0	0	12076	1261	44	2	2024	2	PLEKHG2	19	39913652	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	26494667	39913652	19215331	99	13423											
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49674876	49674876	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	49674876	C	T	49674876	2	4	209	1	0	0	0	0	0	0	0	1	16600	871	31	1		1	TRPM4	19	49674876	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	9761224	49674876	9454107	100	13424											
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52091298	52091298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	52091298	T	C	52091298	3	2	209	1	0	0	0	0	1	0	0	0	17757	1667	58	3	1728	3	ZNF175	19	52091298	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	2416422	52091298	7037685	101	13425											
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	50051812	50051813	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	-	50051813	GC	-	50051812	7	5	209	1	0	1	0	1	0	0	0	0	10369	1319	46	0	892	0	NFATC2	20	50051812	Frame_Shift_Del	DEL	GC	TCGA-B1-A655-01A-11D-A31Z-10		50051812	12973708	102	13426											
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	40665927	40665927	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	40665927	G	T	40665927	4	4	209	1	0	0	0	0	0	1	0	0	1527	1294	45	4	6700	4	BRWD1	21	40665927	Nonsense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10		40665927	7463968	103	13427											
COL18A1	80781	hgsc.bcm.edu	37	21	46924434	46924434	+	Splice_Site	SNP	A	A	C	rs28696990		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	46924434	A	C	46924434	5	2	209	1	0	0	0	0	0	0	1	0	3677	202	7	5	4316	5	COL18A1	21	46924434	Splice_Site	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	6258507	46924434	1205461	104	13428											
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32754194	32754195	+	Missense_Mutation	DNP	TA	TA	AT	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	AT	32754195	TA	AT	32754194	3	1	209	1	0	0	0	0	1	0	0	0	13268	1522	53	5	138	5	RFPL3	22	32754194	Missense_Mutation	DNP	TA	TCGA-B1-A655-01A-11D-A31Z-10		32754194	18550372	105	13429											
SSTR3	6753	broad.mit.edu	37	22	37602594	37602594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	37602594	A	G	37602594	3	3	209	1	0	0	0	0	1	0	0	0	15211	420	15	3	11	3	SSTR3	22	37602594	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	4848400	37602594	13701972	106	13430											
IL1RAPL1	11141	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	29973429	29973429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	29973429	A	C	29973429	3	2	209	1	0	0	0	0	1	0	0	0	7668	72	3	5	1621	5	IL1RAPL1	23	29973429	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10		29973429	125297131	107	13431											
ERCC6L	54821	broad.mit.edu;bcgsc.ca	37	X	71427693	71427693	+	Silent	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	71427693	G	T	71427693	2	4	209	1	0	0	0	0	0	0	0	1	5220	987	35	4		4	ERCC6L	23	71427693	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	41454264	71427693	83842867	108	13432											
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102841991	102841991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	G	102841991	A	G	102841991	3	3	209	1	0	0	0	0	1	0	0	0	15685	43	2	3	390	3	TCEAL4	23	102841991	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	31414298	102841991	52428569	109	13433											
DDX26B	203522	broad.mit.edu	37	X	134706893	134706893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	T	134706893	G	T	134706893	3	4	209	1	0	0	0	0	1	0	0	0	4355	1319	46	4	1483	4	DDX26B	23	134706893	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	31864902	134706893	20563667	110	13434											
F8	2157	broad.mit.edu	37	X	154159037	154159037	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	C	154159037	A	C	154159037	3	2	209	1	0	0	0	0	1	0	0	0	5352	101	4	5	4107	5	F8	23	154159037	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	19452144	154159037	1111523	111	13435											
GABRD	2563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1960690	1960690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	1960690	G	A	1960690	3	1	210	1	0	0	0	0	1	0	0	0	6176	1087	38	1	858	1	GABRD	1	1960690	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		1960690	247289931	1	13436											
ARID1A	8289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27100918	27100918	+	Silent	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	27100918	T	C	27100918	2	2	210	1	0	0	0	0	0	0	0	1	913	1538	54	3		3	ARID1A	1	27100918	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	25140228	27100918	222149703	2	13437											
NUDC	10726	broad.mit.edu	37	1	27268248	27268248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	27268248	A	G	27268248	3	3	210	1	0	0	0	0	1	0	0	0	10728	72	3	3	382	3	NUDC	1	27268248	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	167330	27268248	221982373	3	13438											
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27943445	27943445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	27943445	T	A	27943445	3	1	210	1	0	0	0	0	1	0	0	0	5881	1841	64	5	1012	5	FGR	1	27943445	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	675197	27943445	221307176	4	13439											
MRPS15	64960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36921882	36921882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	36921882	A	G	36921882	3	3	210	1	0	0	0	0	1	0	0	0	9832	449	16	3	239	3	MRPS15	1	36921882	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	8978437	36921882	212328739	5	13440											
BCAR3	8412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94033045	94033045	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	94033045	G	C	94033045	3	2	210	1	0	0	0	0	1	0	0	0	1349	1174	41	4	395	4	BCAR3	1	94033045	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	57111163	94033045	155217576	6	13441											
DRAM2	128338	broad.mit.edu	37	1	111667502	111667502	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	111667502	G	T	111667502	4	4	210	1	0	0	0	0	0	1	0	0	4756	1333	46	4	619	4	DRAM2	1	111667502	Nonsense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	17634457	111667502	137583119	7	13442											
FLG	2312	broad.mit.edu	37	1	152276113	152276113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	152276113	G	T	152276113	3	4	210	1	0	0	0	0	1	0	0	0	5929	1087	38	4	940	4	FLG	1	152276113	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	40608611	152276113	96974508	8	13443											
GON4L	54856	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	155734744	155734744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	155734744	A	G	155734744	3	3	210	1	0	0	0	0	1	0	0	0	6579	217	8	3	2367	3	GON4L	1	155734744	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	3458631	155734744	93515877	9	13444											
GORAB	92344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	170508438	170508438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	170508438	A	C	170508438	3	2	210	1	0	0	0	0	1	0	0	0	6581	14	1	5	230	5	GORAB	1	170508438	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	14773694	170508438	78742183	10	13445											
PRDX6	9588	bcgsc.ca	37	1	173454533	173454534	+	Frame_Shift_Ins	INS	-	-	AAAAAAA	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	AAAAAAA	173454534	-	AAAAAAA	173454533	7	5	210	1	0	1	1	0	0	0	0	0	12479	943	33	0	296	0	PRDX6	1	173454533	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	2946095	173454533	75796088	11	13446											
TEDDM1	127670	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182369011	182369011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	182369011	A	G	182369011	3	3	210	1	0	0	0	0	1	0	0	0	15761	188	7	3	215	3	TEDDM1	1	182369011	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	8914478	182369011	66881610	12	13447											
PLXNA2	5362	broad.mit.edu	37	1	208257763	208257763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	208257763	G	A	208257763	3	1	210	1	0	0	0	0	1	0	0	0	12127	1087	38	1	3516	1	PLXNA2	1	208257763	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	25888752	208257763	40992858	13	13448											
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223983631	223983631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	223983631	C	A	223983631	3	1	210	1	0	0	0	0	1	0	0	0	16396	680	24	4	818	4	TP53BP2	1	223983631	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	15725868	223983631	25266990	14	13449											
PARP1	142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	226555997	226555999	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	226555999	GAG	-	226555997	7	5	210	1	0	1	0	1	0	0	0	0	11461	942	33	0	896	0	PARP1	1	226555997	In_Frame_Del	DEL	GAG	TCGA-B1-A656-01A-11D-A31X-10	2572366	226555997	22694624	15	13450											
RPS7	6201	bcgsc.ca	37	2	3624203	3624205	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GTC	GTC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	3624205	GTC	-	3624203	7	5	210	1	0	1	0	1	0	0	0	0	13673	1377	48	0	284	0	RPS7	2	3624203	In_Frame_Del	DEL	GTC	TCGA-B1-A656-01A-11D-A31X-10		3624203	239575170	16	13451											
LPIN1	23175	broad.mit.edu	37	2	11925180	11925180	+	Silent	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	11925180	C	T	11925180	2	4	210	1	0	0	0	0	0	0	0	1	8925	767	27	1		1	LPIN1	2	11925180	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	8300977	11925180	231274193	17	13452											
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	16082258	16082258	+	Silent	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	16082258	A	G	16082258	2	3	210	1	0	0	0	0	0	0	0	1	10028	378	14	3		3	MYCN	2	16082258	Silent	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	4157078	16082258	227117115	18	13453											
DPY30	84661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32264491	32264491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	32264491	T	A	32264491	3	1	210	1	0	0	0	0	1	0	0	0	4746	1594	55	5	280	5	DPY30	2	32264491	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	16182233	32264491	210934882	19	13454											
EPAS1	2034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	46607787	46607787	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	46607787	C	G	46607787	3	3	210	1	0	0	0	0	1	0	0	0	5152	478	17	4	2022	4	EPAS1	2	46607787	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	14343296	46607787	196591586	20	13455											
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125175092	125175092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	125175092	G	A	125175092	3	1	210	1	0	0	0	0	1	0	0	0	3652	1377	48	2	468	2	CNTNAP5	2	125175092	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	78567305	125175092	118024281	21	13456											
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179843225	179843225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	179843225	C	A	179843225	4	1	210	1	0	0	0	0	0	1	0	0	2777	841	29	4		4	CCDC141	2	179843225	Nonsense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	54668133	179843225	63356148	22	13457											
HIBCH	26275	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191069874	191069874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	191069874	T	C	191069874	3	2	210	1	0	0	0	0	1	0	0	0	7107	1609	56	3	34	3	HIBCH	2	191069874	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	11226649	191069874	52129499	23	13458											
ALS2	57679	broad.mit.edu	37	2	202572610	202572610	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	202572610	G	-	202572610	7	5	210	1	0	1	0	1	0	0	0	0	550	942	33	0	616	0	ALS2	2	202572610	Frame_Shift_Del	DEL	G	TCGA-B1-A656-01A-11D-A31X-10	11502736	202572610	40626763	24	13459	168	2									
ALS2	57679	broad.mit.edu;bcgsc.ca	37	2	202572613	202572623	+	Frame_Shift_Del	DEL	CGGGAATCTGA	CGGGAATCTGA	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	CGGGAATCTGA	CGGGAATCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	202572623	CGGGAATCTGA	-	202572613	7	5	210	1	0	1	0	1	0	0	0	0	550	884	31	0	619	0	ALS2	2	202572613	Frame_Shift_Del	DEL	CGGGAATCTGA	TCGA-B1-A656-01A-11D-A31X-10	3	202572613	40626760	25	13460	168	2									
NEU2	4759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233898967	233898967	+	Silent	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	233898967	C	T	233898967	2	4	210	1	0	0	0	0	0	0	0	1	10349	796	28	2		2	NEU2	2	233898967	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	31326354	233898967	9300406	26	13461											
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9724894	9724896	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	9724896	CCT	-	9724894	7	5	210	1	0	1	0	1	0	0	0	0	9949	518	18	0	968	0	MTMR14	3	9724894	In_Frame_Del	DEL	CCT	TCGA-B1-A656-01A-11D-A31X-10		9724894	188297536	27	13462	169	2									
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9724897	9724898	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	9724898	-	A	9724897	7	5	210	1	0	1	1	0	0	0	0	0	9949	1277	45	0	971	0	MTMR14	3	9724897	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	3	9724897	188297533	28	13463	169	2									
HDAC11	79885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13525052	13525052	+	Silent	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	13525052	T	G	13525052	2	3	210	1	0	0	0	0	0	0	0	1	7013	1741	61	5		5	HDAC11	3	13525052	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	3800155	13525052	184497378	29	13464											
DAZL	1618	broad.mit.edu	37	3	16639640	16639640	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	16639640	C	G	16639640	3	3	210	1	0	0	0	0	1	0	0	0	4248	565	20	4	727	4	DAZL	3	16639640	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	3114588	16639640	181382790	30	13465											
TRAK1	22906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42218379	42218379	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	42218379	G	A	42218379	2	1	210	1	0	0	0	0	0	0	0	1	16461	991	35	2		2	TRAK1	3	42218379	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	25578739	42218379	155804051	31	13466											
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	43388848	43388848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	43388848	A	T	43388848	3	4	210	1	0	0	0	0	1	0	0	0	14864	14	1	5	1115	5	SNRK	3	43388848	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	1170469	43388848	154633582	32	13467											
NBEAL2	23218	broad.mit.edu	37	3	47030855	47030855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	47030855	C	T	47030855	3	4	210	1	0	0	0	0	1	0	0	0	10196	759	27	1	475	1	NBEAL2	3	47030855	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	3642007	47030855	150991575	33	13468											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47165390	47165391	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	47165391	-	A	47165390	7	5	210	1	0	1	1	0	0	0	0	0	14144	478	17	0	7034	0	SETD2	3	47165390	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	134535	47165390	150857040	34	13469											
PBRM1	55193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52649430	52649430	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	52649430	T	A	52649430	4	1	210	1	0	0	0	0	0	1	0	0	11498	1792	62	5	3103	5	PBRM1	3	52649430	Nonsense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	5484040	52649430	145373000	35	13470											
SH3TC1	54436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8230146	8230146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	8230146	T	C	8230146	3	2	210	1	0	0	0	0	1	0	0	0	14274	1609	56	3	2767	3	SH3TC1	4	8230146	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10		8230146	182924130	36	13471											
NPFFR2	10886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	73012854	73012854	+	Silent	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	73012854	C	G	73012854	2	3	210	1	0	0	0	0	0	0	0	1	10585	610	22	4		4	NPFFR2	4	73012854	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	64782708	73012854	118141422	37	13472											
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89658657	89658657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	89658657	T	A	89658657	3	1	210	1	0	0	0	0	1	0	0	0	5456	1551	54	5	475	5	FAM13A	4	89658657	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	16645803	89658657	101495619	38	13473											
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	154542029	154542029	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	154542029	C	A	154542029	4	1	210	1	0	0	0	0	0	1	0	0	8208	838	29	4	3795	4	KIAA0922	4	154542029	Nonsense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	64883372	154542029	36612247	39	13474											
PALLD	23022	broad.mit.edu	37	4	169432701	169432701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	169432701	G	T	169432701	3	4	210	1	0	0	0	0	1	0	0	0	11414	942	33	4	48	4	PALLD	4	169432701	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	14890672	169432701	21721575	40	13475											
C6	729	broad.mit.edu	37	5	41176588	41176588	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	41176588	A	T	41176588	3	4	210	1	0	0	0	0	1	0	0	0	2317	420	15	5	1691	5	C6	5	41176588	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10		41176588	139738672	41	13476	170	2									
C6	729	broad.mit.edu	37	5	41176594	41176594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	41176594	T	G	41176594	3	3	210	1	0	0	0	0	1	0	0	0	2317	1551	54	5	1697	5	C6	5	41176594	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	6	41176594	139738666	42	13477	170	2									
F2R	2149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	76029290	76029290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	76029290	A	G	76029290	3	3	210	1	0	0	0	0	1	0	0	0	5345	362	13	3	1246	3	F2R	5	76029290	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	34852696	76029290	104885970	43	13478											
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	79950715	G	C	79950715	3	2	210	1	0	0	0	0	1	0	0	0	9878	1203	42	4	171	4	MSH3	5	79950715	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	3921425	79950715	100964545	44	13479	171	2									
MSH3	4437	hgsc.bcm.edu	37	5	79950718	79950718	+	Missense_Mutation	SNP	G	G	C	rs148550291		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	79950718	G	C	79950718	3	2	210	1	0	0	0	0	1	0	0	0	9878	1087	38	4	174	4	MSH3	5	79950718	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	3	79950718	100964542	45	13480	171	2									
AFF4	27125	broad.mit.edu;bcgsc.ca	37	5	132224787	132224791	+	Frame_Shift_Del	DEL	GCTTT	GCTTT	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GCTTT	GCTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	132224791	GCTTT	-	132224787	7	5	210	1	0	1	0	1	0	0	0	0	359	971	34	0	807	0	AFF4	5	132224787	Frame_Shift_Del	DEL	GCTTT	TCGA-B1-A656-01A-11D-A31X-10	52274069	132224787	48690473	46	13481											
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138855862	138855862	+	Missense_Mutation	SNP	C	C	T	rs117897081	byfrequency;alternate_allele	TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	138855862	C	T	138855862	3	4	210	1	0	0	0	0	1	0	0	0	16101	768	27	1	19	1	TMEM173	5	138855862	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	6631075	138855862	42059398	47	13482											
UNC5A	90249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176305475	176305475	+	Splice_Site	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	176305475	G	A	176305475	5	1	210	1	0	0	0	0	0	0	1	0	17003	1014	35	2	2069	2	UNC5A	5	176305475	Splice_Site	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	37449613	176305475	4609785	48	13483											
UIMC1	51720	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176395662	176395662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	176395662	C	T	176395662	3	4	210	1	0	0	0	0	1	0	0	0	16983	681	24	2	1105	2	UIMC1	5	176395662	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	90187	176395662	4519598	49	13484											
SQSTM1	8878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179250983	179250983	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	179250983	A	T	179250983	3	4	210	1	0	0	0	0	1	0	0	0	15142	188	7	5	437	5	SQSTM1	5	179250983	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	2855321	179250983	1664277	50	13485											
DHX16	8449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30622528	30622528	+	Silent	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	30622528	C	A	30622528	2	1	210	1	0	0	0	0	0	0	0	1	4504	697	25	4		4	DHX16	6	30622528	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		30622528	140492539	51	13486											
TNFRSF21	27242	broad.mit.edu	37	6	47251781	47251781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	47251781	T	C	47251781	3	2	210	1	0	0	0	0	1	0	0	0	16307	1609	56	3	847	3	TNFRSF21	6	47251781	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	16629253	47251781	123863286	52	13487											
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70646796	70646796	+	Silent	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	70646796	A	G	70646796	2	3	210	1	0	0	0	0	0	0	0	1	3678	117	5	3		3	COL19A1	6	70646796	Silent	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	23395015	70646796	100468271	53	13488											
IMPG1	3617	broad.mit.edu	37	6	76640750	76640750	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	76640750	G	A	76640750	2	1	210	1	0	0	0	0	0	0	0	1	7735	1194	42	2		2	IMPG1	6	76640750	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5993954	76640750	94474317	54	13489											
TRIL	9865	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	28996484	28996484	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	28996484	G	A	28996484	2	1	210	1	0	0	0	0	0	0	0	1	16497	1219	43	2		2	TRIL	7	28996484	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		28996484	130142179	55	13490											
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48319048	48319048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	48319048	G	A	48319048	3	1	210	1	0	0	0	0	1	0	0	0	31	942	33	2	8156	2	ABCA13	7	48319048	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	19322564	48319048	110819615	56	13491											
POM121L12	285877	broad.mit.edu	37	7	53103618	53103618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	53103618	A	C	53103618	3	2	210	1	0	0	0	0	1	0	0	0	12248	275	10	5	256	5	POM121L12	7	53103618	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	4784570	53103618	106035045	57	13492											
LIMK1	3984	broad.mit.edu;bcgsc.ca	37	7	73535230	73535230	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	73535230	G	A	73535230	2	1	210	1	0	0	0	0	0	0	0	1	8808	1190	42	2		2	LIMK1	7	73535230	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	20431612	73535230	85603433	58	13493											
LMTK2	22853	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	97833339	97833339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	97833339	T	G	97833339	3	3	210	1	0	0	0	0	1	0	0	0	8866	1783	62	5	4374	5	LMTK2	7	97833339	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	24298109	97833339	61305324	59	13494											
SRRT	51593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100485704	100485704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	100485704	C	A	100485704	3	1	210	1	0	0	0	0	1	0	0	0	15184	595	21	4	2434	4	SRRT	7	100485704	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	2652365	100485704	58652959	60	13495											
CDHR3	222256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	105673047	105673047	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	105673047	G	-	105673047	7	5	210	1	0	1	0	1	0	0	0	0	3122	1335	47	0	2636	0	CDHR3	7	105673047	Frame_Shift_Del	DEL	G	TCGA-B1-A656-01A-11D-A31X-10	5187343	105673047	53465616	61	13496											
DLD	1738	broad.mit.edu;bcgsc.ca	37	7	107556127	107556127	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	107556127	A	-	107556127	7	5	210	1	0	1	0	1	0	0	0	0	4553	233	9	0	895	0	DLD	7	107556127	Frame_Shift_Del	DEL	A	TCGA-B1-A656-01A-11D-A31X-10	1883080	107556127	51582536	62	13497	172	2									
DLD	1738	bcgsc.ca	37	7	107556128	107556128	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	107556128	A	T	107556128	4	4	210	1	0	0	0	0	0	1	0	0	4553	15	1	5	896	5	DLD	7	107556128	Nonsense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	1	107556128	51582535	63	13498	172	2									
CADPS2	93664	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122081599	122081599	+	Silent	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	122081599	A	G	122081599	2	3	210	1	0	0	0	0	0	0	0	1	2573	146	6	3		3	CADPS2	7	122081599	Silent	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	14525471	122081599	37057064	64	13499											
TMEM176A	55365	broad.mit.edu;ucsc.edu	37	7	150501526	150501526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	150501526	G	T	150501526	3	4	210	1	0	0	0	0	1	0	0	0	16104	1357	47	4	650	4	TMEM176A	7	150501526	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	28419927	150501526	8637137	65	13500											
CHPF2	54480	broad.mit.edu	37	7	150935559	150935559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	150935559	T	G	150935559	3	3	210	1	0	0	0	0	1	0	0	0	3371	1696	59	5	2125	5	CHPF2	7	150935559	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	434033	150935559	8203104	66	13501											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41551436	41551436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	41551436	C	T	41551436	3	4	210	1	0	0	0	0	1	0	0	0	620	768	27	1	2515	1	ANK1	8	41551436	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		41551436	104812586	67	13502											
TRPA1	8989	bcgsc.ca	37	8	72964852	72964852	+	Missense_Mutation	SNP	G	G	T	rs147715599	alternate_allele	TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	72964852	G	T	72964852	3	4	210	1	0	0	0	0	1	0	0	0	16589	1145	40	4	1622	4	TRPA1	8	72964852	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	31413416	72964852	73399170	68	13503											
RGS22	26166	broad.mit.edu	37	8	101054051	101054051	+	Silent	SNP	G	G	A	rs200708091		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	101054051	G	A	101054051	2	1	210	1	0	0	0	0	0	0	0	1	13318	1140	40	1		1	RGS22	8	101054051	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	28089199	101054051	45309971	69	13504											
RFX3	5991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	3271084	3271084	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	3271084	C	G	3271084	3	3	210	1	0	0	0	0	1	0	0	0	13277	797	28	4	1316	4	RFX3	9	3271084	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		3271084	137942347	70	13505											
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	19516367	19516367	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	19516367	A	-	19516367	7	5	210	1	0	1	0	1	0	0	0	0	14479	242	9	0	219	0	SLC24A2	9	19516367	Frame_Shift_Del	DEL	A	TCGA-B1-A656-01A-11D-A31X-10	16245283	19516367	121697064	71	13506											
RASEF	158158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	85624582	85624582	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	85624582	A	T	85624582	4	4	210	1	0	0	0	0	0	1	0	0	13081	224	8	5	1337	5	RASEF	9	85624582	Nonsense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	66108215	85624582	55588849	72	13507											
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130438137	130438137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	130438137	G	A	130438137	3	1	210	1	0	0	0	0	1	0	0	0	15364	971	34	2	1219	2	STXBP1	9	130438137	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	44813555	130438137	10775294	73	13508											
ENG	2022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130582297	130582297	+	Missense_Mutation	SNP	G	G	A	rs199764615		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	130582297	G	A	130582297	3	1	210	1	0	0	0	0	1	0	0	0	5119	1145	40	1	876	1	ENG	9	130582297	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	144160	130582297	10631134	74	13509											
ASB6	140459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132400146	132400146	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	132400146	T	A	132400146	4	1	210	1	0	0	0	0	0	1	0	0	1027	1821	63	5	80	5	ASB6	9	132400146	Nonsense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	1817849	132400146	8813285	75	13510											
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	45936826	45936826	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	45936826	T	A	45936826	3	1	210	1	0	0	0	0	1	0	0	0	540	1435	50	5	1254	5	ALOX5	10	45936826	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10		45936826	89597921	76	13511											
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	51585173	51585173	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	51585173	G	A	51585173	2	1	210	1	0	0	0	0	0	0	0	1	10238	991	35	2		2	NCOA4	10	51585173	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5648347	51585173	83949574	77	13512											
NUDT13	25961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74879906	74879906	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	74879906	A	C	74879906	3	2	210	1	0	0	0	0	1	0	0	0	10736	188	7	5	220	5	NUDT13	10	74879906	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	23294733	74879906	60654841	78	13513											
ZMIZ1	57178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	80968102	80968102	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	80968102	A	T	80968102	3	4	210	1	0	0	0	0	1	0	0	0	17708	246	9	5	76	5	ZMIZ1	10	80968102	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	6088196	80968102	54566645	79	13514											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108371744	108371744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	108371744	G	T	108371744	3	4	210	1	0	0	0	0	1	0	0	0	14943	1252	44	4	802	4	SORCS1	10	108371744	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	27403642	108371744	27163003	80	13515											
OR5P2	120065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	7818418	7818419	+	Missense_Mutation	DNP	TG	TG	AA	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	AA	7818419	TG	AA	7818418	3	1	210	1	0	0	0	0	1	0	0	0	11185	1799	63	5	900	5	OR5P2	11	7818418	Missense_Mutation	DNP	TG	TCGA-B1-A656-01A-11D-A31X-10		7818418	127188098	81	13516	173	2									
OR5P2	120065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	7818420	7818420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	7818420	G	T	7818420	3	4	210	1	0	0	0	0	1	0	0	0	11185	1174	41	4	902	4	OR5P2	11	7818420	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	2	7818420	127188096	82	13517	173	2									
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	27402259	27402259	+	Splice_Site	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	27402259	C	G	27402259	5	3	210	1	0	0	0	0	0	0	1	0	8763	927	32	4	2065	4	LGR4	11	27402259	Splice_Site	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	19583839	27402259	107604257	83	13518											
PLCB3	5331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64034708	64034708	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	64034708	C	T	64034708	4	4	210	1	0	0	0	0	0	1	0	0	12036	711	25	2	3584	2	PLCB3	11	64034708	Nonsense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	36632449	64034708	70971808	84	13519											
NRXN2	9379	broad.mit.edu	37	11	64453314	64453314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	64453314	C	T	64453314	3	4	210	1	0	0	0	0	1	0	0	0	10673	768	27	1	4523	1	NRXN2	11	64453314	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	418606	64453314	70553202	85	13520											
NAALADL1	10004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64813975	64813975	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	64813975	G	A	64813975	2	1	210	1	0	0	0	0	0	0	0	1	10136	1256	44	2		2	NAALADL1	11	64813975	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	360661	64813975	70192541	86	13521											
CLPB	81570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72145214	72145214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	72145214	T	A	72145214	3	1	210	1	0	0	0	0	1	0	0	0	3553	1667	58	5	1886	5	CLPB	11	72145214	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	7331239	72145214	62861302	87	13522											
KCNE3	10008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74168349	74168350	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	AA	74168350	TT	AA	74168349	3	1	210	1	0	0	0	0	1	0	0	0	8031	1609	56	5	55	5	KCNE3	11	74168349	Missense_Mutation	DNP	TT	TCGA-B1-A656-01A-11D-A31X-10	2023135	74168349	60838167	88	13523											
FZD4	8322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	86663362	86663362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	86663362	T	C	86663362	3	2	210	1	0	0	0	0	1	0	0	0	6139	1580	55	3	1181	3	FZD4	11	86663362	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	12495013	86663362	48343154	89	13524											
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	103091430	103091430	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	103091430	C	G	103091430	3	3	210	1	0	0	0	0	1	0	0	0	4848	739	26	4	9251	4	DYNC2H1	11	103091430	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	16428068	103091430	31915086	90	13525											
SLC35F2	54733	broad.mit.edu	37	11	107682461	107682461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	107682461	G	T	107682461	3	4	210	1	0	0	0	0	1	0	0	0	14602	1020	36	4	802	4	SLC35F2	11	107682461	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	4591031	107682461	27324055	91	13526											
BACE1	23621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117186300	117186300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	117186300	G	A	117186300	3	1	210	1	0	0	0	0	1	0	0	0	1281	1059	37	1	1329	1	BACE1	11	117186300	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	9503839	117186300	17820216	92	13527											
ADAMTS15	170689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	130319535	130319535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	130319535	C	G	130319535	3	3	210	1	0	0	0	0	1	0	0	0	260	796	28	4	669	4	ADAMTS15	11	130319535	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	13133235	130319535	4686981	93	13528											
GUCY2C	2984	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14839143	14839143	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	14839143	C	G	14839143	3	3	210	1	0	0	0	0	1	0	0	0	6903	739	26	4	2974	4	GUCY2C	12	14839143	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		14839143	119012752	94	13529											
PLCZ1	89869	hgsc.bcm.edu;bcgsc.ca	37	12	18876363	18876364	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	18876364	-	T	18876363	7	5	210	1	0	1	1	0	0	0	0	0	12051	1252	44	0	1625	0	PLCZ1	12	18876363	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	4037220	18876363	114975532	95	13530											
C12orf40	283461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	40076521	40076521	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	40076521	A	-	40076521	7	5	210	1	0	1	0	1	0	0	0	0	1688	117	5	0	825	0	C12orf40	12	40076521	Frame_Shift_Del	DEL	A	TCGA-B1-A656-01A-11D-A31X-10	21200158	40076521	93775374	96	13531											
FAM186B	84070	broad.mit.edu	37	12	49994268	49994268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	49994268	T	C	49994268	3	2	210	1	0	0	0	0	1	0	0	0	5516	1512	53	3	1542	3	FAM186B	12	49994268	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	9917747	49994268	83857627	97	13532											
IGFBP6	3489	broad.mit.edu	37	12	53491528	53491530	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	53491530	GCT	-	53491528	7	5	210	1	0	1	0	1	0	0	0	0	7590	1074	38	0	29	0	IGFBP6	12	53491528	In_Frame_Del	DEL	GCT	TCGA-B1-A656-01A-11D-A31X-10	3497260	53491528	80360367	98	13533											
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	59268266	59268266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	59268266	T	G	59268266	3	3	210	1	0	0	0	0	1	0	0	0	8953	1406	49	5	586	5	LRIG3	12	59268266	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	5776738	59268266	74583629	99	13534											
GPN3	51184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110902939	110902939	+	Silent	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	110902939	T	C	110902939	2	2	210	1	0	0	0	0	0	0	0	1	6626	1567	55	3		3	GPN3	12	110902939	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	51634673	110902939	22948956	100	13535											
BRCA2	675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32912897	32912897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	32912897	G	T	32912897	3	4	210	1	0	0	0	0	1	0	0	0	1501	1290	45	4	4443	4	BRCA2	13	32912897	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		32912897	82256981	101	13536											
KLF5	688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	73636276	73636276	+	Missense_Mutation	SNP	C	C	T	rs200707995		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	73636276	C	T	73636276	3	4	210	1	0	0	0	0	1	0	0	0	8356	652	23	1	545	1	KLF5	13	73636276	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	40723379	73636276	41533602	102	13537											
FAM155A	728215	hgsc.bcm.edu	37	13	108518698	108518698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	108518698	G	T	108518698	3	4	210	1	0	0	0	0	1	0	0	0	5469	1328	46	4	1141	4	FAM155A	13	108518698	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	34882422	108518698	6651180	103	13538											
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	113719317	113719318	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	113719318	-	G	113719317	7	5	210	1	0	1	1	0	0	0	0	0	9386	1580	55	0	966	0	MCF2L	13	113719317	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	5200619	113719317	1450561	104	13539											
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	39877738	39877738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	39877738	A	G	39877738	3	3	210	1	0	0	0	0	1	0	0	0	15865	333	12	3	1116	3	THBS1	15	39877738	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10		39877738	62653654	105	13540											
SPINT1	6692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41136856	41136856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	41136856	C	A	41136856	3	1	210	1	0	0	0	0	1	0	0	0	15080	739	26	4	106	4	SPINT1	15	41136856	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1259118	41136856	61394536	106	13541											
LRRC57	255252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42837381	42837381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	42837381	C	T	42837381	3	4	210	1	0	0	0	0	1	0	0	0	9020	797	28	2	155	2	LRRC57	15	42837381	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1700525	42837381	59694011	107	13542											
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49148178	49148178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	49148178	G	T	49148178	3	4	210	1	0	0	0	0	1	0	0	0	14286	1232	43	4	698	4	SHC4	15	49148178	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	6310797	49148178	53383214	108	13543											
FBXL22	283807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	63889797	63889797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	63889797	C	T	63889797	3	4	210	1	0	0	0	0	1	0	0	0	5726	652	23	1	190	1	FBXL22	15	63889797	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	14741619	63889797	38641595	109	13544											
LARP6	55323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	71128826	71128826	+	Silent	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	71128826	T	C	71128826	2	2	210	1	0	0	0	0	0	0	0	1	8639	1538	54	3		3	LARP6	15	71128826	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	7239029	71128826	31402566	110	13545											
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	88680721	88680721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	88680721	T	C	88680721	3	2	210	1	0	0	0	0	1	0	0	0	10715	1551	54	3	2301	3	NTRK3	15	88680721	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	17551895	88680721	13850671	111	13546											
PARN	5073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14678281	14678281	+	Splice_Site	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	14678281	T	C	14678281	5	2	210	1	0	0	0	0	0	0	1	0	11460	1594	55	3	951	3	PARN	16	14678281	Splice_Site	SNP	T	TCGA-B1-A656-01A-11D-A31X-10		14678281	75676472	112	13547											
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20489950	20489950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	20489950	G	A	20489950	3	1	210	1	0	0	0	0	1	0	0	0	183	1203	42	2	1266	2	ACSM2A	16	20489950	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5811669	20489950	69864803	113	13548											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24801321	24801321	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	24801321	C	G	24801321	3	3	210	1	0	0	0	0	1	0	0	0	16352	594	21	4	1380	4	TNRC6A	16	24801321	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	4311371	24801321	65553432	114	13549											
ATP2A1	487	bcgsc.ca	37	16	28914659	28914659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	28914659	C	T	28914659	3	4	210	1	0	0	0	0	1	0	0	0	1136	643	23	1	2960	1	ATP2A1	16	28914659	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	4113338	28914659	61440094	115	13550											
ZNF764	92595	broad.mit.edu	37	16	30569338	30569338	+	Silent	SNP	G	G	T	rs112425159		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	30569338	G	T	30569338	2	4	210	1	0	0	0	0	0	0	0	1	18150	1086	38	4		4	ZNF764	16	30569338	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	1654679	30569338	59785415	116	13551											
PYDC1	260434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31228204	31228204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	31228204	A	G	31228204	3	3	210	1	0	0	0	0	1	0	0	0	12871	333	12	3	127	3	PYDC1	16	31228204	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	658866	31228204	59126549	117	13552											
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48576974	48576974	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	48576974	G	A	48576974	2	1	210	1	0	0	0	0	0	0	0	1	10116	1335	47	2		2	N4BP1	16	48576974	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	17348770	48576974	41777779	118	13553											
ADCY7	113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50338447	50338447	+	Silent	SNP	C	C	T	rs144290211		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	50338447	C	T	50338447	2	4	210	1	0	0	0	0	0	0	0	1	299	535	19	1		1	ADCY7	16	50338447	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1761473	50338447	40016306	119	13554											
BCAR1	9564	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	75276534	75276534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	75276534	G	C	75276534	3	2	210	1	0	0	0	0	1	0	0	0	1348	1116	39	4	2230	4	BCAR1	16	75276534	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	24938087	75276534	15078219	120	13555											
HS3ST3A1	9955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	13504436	13504436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	13504436	G	T	13504436	3	4	210	1	0	0	0	0	1	0	0	0	7372	1116	39	4	1217	4	HS3ST3A1	17	13504436	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		13504436	67690774	121	13556											
RAI1	10743	broad.mit.edu	37	17	17699993	17699995	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	-	17699995	GCA	-	17699993	7	5	210	1	0	1	0	1	0	0	0	0	13020	1087	38	0	3733	0	RAI1	17	17699993	In_Frame_Del	DEL	GCA	TCGA-B1-A656-01A-11D-A31X-10	4195557	17699993	63495217	122	13557											
NF1	4763	broad.mit.edu	37	17	29533389	29533389	+	Silent	SNP	G	G	A	rs201604273		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	29533389	G	A	29533389	2	1	210	1	0	0	0	0	0	0	0	1	10363	1130	39	1		1	NF1	17	29533389	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	11833396	29533389	51661821	123	13558											
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33288777	33288777	+	Silent	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	33288777	C	A	33288777	2	1	210	1	0	0	0	0	0	0	0	1	18196	842	30	4		4	ZNF830	17	33288777	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	3755388	33288777	47906433	124	13559											
GGNBP2	79893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34934557	34934557	+	Silent	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	34934557	C	T	34934557	2	4	210	1	0	0	0	0	0	0	0	1	6366	805	28	2		2	GGNBP2	17	34934557	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1645780	34934557	46260653	125	13560											
CNTNAP1	8506	broad.mit.edu	37	17	40849969	40849969	+	Splice_Site	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	40849969	G	T	40849969	5	4	210	1	0	0	0	0	0	0	1	0	3648	1391	48	4	3953	4	CNTNAP1	17	40849969	Splice_Site	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5915412	40849969	40345241	126	13561											
NBR1	4077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41343439	41343439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	41343439	T	C	41343439	3	2	210	1	0	0	0	0	1	0	0	0	10207	1821	63	3	948	3	NBR1	17	41343439	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	493470	41343439	39851771	127	13562											
RPRML	388394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45056083	45056083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	45056083	G	T	45056083	3	4	210	1	0	0	0	0	1	0	0	0	13632	1310	46	4	75	4	RPRML	17	45056083	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	3712644	45056083	36139127	128	13563											
HOXB4	3214	hgsc.bcm.edu;bcgsc.ca	37	17	46655633	46655634	+	In_Frame_Ins	INS	-	-	CTT	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	CTT	46655634	-	CTT	46655633	7	5	210	1	0	1	1	0	0	0	0	0	7310	43	2	0	714	0	HOXB4	17	46655633	In_Frame_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	1599550	46655633	34539577	129	13564											
ABCA10	10349	broad.mit.edu	37	17	67189985	67189985	+	Silent	SNP	T	T	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	67189985	T	C	67189985	2	2	210	1	0	0	0	0	0	0	0	1	29	1606	56	3		3	ABCA10	17	67189985	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	20534352	67189985	14005225	130	13565											
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72862364	72862364	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	72862364	G	A	72862364	2	1	210	1	0	0	0	0	0	0	0	1	5814	962	34	2		2	FDXR	17	72862364	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5672379	72862364	8332846	131	13566											
FBF1	85302	broad.mit.edu	37	17	73916511	73916511	+	Splice_Site	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	73916511	C	A	73916511	5	1	210	1	0	0	0	0	0	0	1	0	5702	811	28	4	1824	4	FBF1	17	73916511	Splice_Site	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1054147	73916511	7278699	132	13567											
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13055803	13055803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	13055803	A	T	13055803	3	4	210	1	0	0	0	0	1	0	0	0	3253	391	14	5	3284	5	CEP192	18	13055803	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10		13055803	65021445	133	13568											
CABLES1	91768	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	20814665	20814665	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	20814665	G	A	20814665	2	1	210	1	0	0	0	0	0	0	0	1	2531	1161	41	2		2	CABLES1	18	20814665	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	7758862	20814665	57262583	134	13569											
PHLPP1	23239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	60384475	60384475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	60384475	T	A	60384475	3	1	210	1	0	0	0	0	1	0	0	0	11861	1551	54	5	1561	5	PHLPP1	18	60384475	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	39569810	60384475	17692773	135	13570											
FSD1	79187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4306032	4306032	+	Silent	SNP	C	C	T	rs143212819		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	4306032	C	T	4306032	2	4	210	1	0	0	0	0	0	0	0	1	6077	535	19	1		1	FSD1	19	4306032	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		4306032	54822951	136	13571											
FEM1A	55527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4792820	4792820	+	Silent	SNP	C	C	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	4792820	C	A	4792820	2	1	210	1	0	0	0	0	0	0	0	1	5816	610	22	4		4	FEM1A	19	4792820	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	486788	4792820	54336163	137	13572											
ZNF558	148156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8922694	8922694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	8922694	A	G	8922694	3	3	210	1	0	0	0	0	1	0	0	0	18001	14	1	3	740	3	ZNF558	19	8922694	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	4129874	8922694	50206289	138	13573											
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9639297	9639297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	9639297	G	A	9639297	3	1	210	1	0	0	0	0	1	0	0	0	17912	1232	43	2	244	2	ZNF426	19	9639297	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	716603	9639297	49489686	139	13574											
ICAM3	3385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10444569	10444569	+	Silent	SNP	T	T	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	10444569	T	A	10444569	2	1	210	1	0	0	0	0	0	0	0	1	7488	1567	55	5		5	ICAM3	19	10444569	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	805272	10444569	48684414	140	13575											
CYP4F3	4051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15752256	15752256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	15752256	C	G	15752256	3	3	210	1	0	0	0	0	1	0	0	0	4192	681	24	4	33	4	CYP4F3	19	15752256	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	5307687	15752256	43376727	141	13576											
CPAMD8	27151	broad.mit.edu	37	19	17056401	17056401	+	Silent	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	17056401	G	T	17056401	2	4	210	1	0	0	0	0	0	0	0	1	3797	1161	41	4		4	CPAMD8	19	17056401	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	1304145	17056401	42072582	142	13577											
ZNF506	440515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19905760	19905760	+	Silent	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	19905760	G	C	19905760	2	2	210	1	0	0	0	0	0	0	0	1	17964	987	35	4		4	ZNF506	19	19905760	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	2849359	19905760	39223223	143	13578											
LTBP4	8425	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41129532	41129532	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	41129532	C	T	41129532	4	4	210	1	0	0	0	0	0	1	0	0	9083	644	23	1	4183	1	LTBP4	19	41129532	Nonsense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	21223772	41129532	17999451	144	13579											
CYP2F1	1572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	41627458	41627458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	41627458	C	T	41627458	3	4	210	1	0	0	0	0	1	0	0	0	4173	768	27	1	594	1	CYP2F1	19	41627458	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	497926	41627458	17501525	145	13580											
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43772079	43772079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	43772079	C	T	43772079	3	4	210	1	0	0	0	0	1	0	0	0	12672	565	20	2	1013	2	PSG9	19	43772079	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	2144621	43772079	15356904	146	13581											
DMWD	1762	broad.mit.edu	37	19	46289396	46289396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	G	46289396	T	G	46289396	3	3	210	1	0	0	0	0	1	0	0	0	4595	1696	59	5	678	5	DMWD	19	46289396	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	2517317	46289396	12839587	147	13582											
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52660313	52660313	+	Missense_Mutation	SNP	A	A	T	rs186568049	alternate_allele	TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	52660313	A	T	52660313	3	4	210	1	0	0	0	0	1	0	0	0	18199	72	3	5	2189	5	ZNF836	19	52660313	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	6370917	52660313	6468670	148	13583											
PTPRH	5794	broad.mit.edu	37	19	55697891	55697891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	55697891	G	A	55697891	3	1	210	1	0	0	0	0	1	0	0	0	12816	1203	42	2	787	2	PTPRH	19	55697891	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	3037578	55697891	3431092	149	13584											
ZIM2	23619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57286732	57286732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	57286732	C	T	57286732	3	4	210	1	0	0	0	0	1	0	0	0	17696	855	30	2	679	2	ZIM2	19	57286732	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1588841	57286732	1842251	150	13585											
ATRN	8455	broad.mit.edu;bcgsc.ca	37	20	3452154	3452154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	3452154	G	C	3452154	3	2	210	1	0	0	0	0	1	0	0	0	1206	1232	43	4	402	4	ATRN	20	3452154	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		3452154	59573366	151	13586											
SSTR4	6754	broad.mit.edu	37	20	23016957	23016957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	23016957	G	T	23016957	3	4	210	1	0	0	0	0	1	0	0	0	15212	962	34	4	839	4	SSTR4	20	23016957	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	19564803	23016957	40008563	152	13587											
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	32639267	32639267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	32639267	G	A	32639267	3	1	210	1	0	0	0	0	1	0	0	0	15902	1377	48	2	4853	2	TIAM1	21	32639267	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		32639267	15490628	153	13588											
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1540611	1540611	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	1540611	G	C	1540611	3	2	210	1	0	0	0	0	1	0	0	0	1046	1164	41	4	700	4	ASMTL	23	1540611	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		1540611	153729949	154	13589											
PIR	8544	broad.mit.edu;bcgsc.ca	37	X	15403223	15403224	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	TCA	15403224	-	TCA	15403223	7	5	210	1	0	1	1	0	0	0	0	0	11951	1725	60	0	100	0	PIR	23	15403223	In_Frame_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	13862612	15403223	139867337	155	13590											
ACOT9	23597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	23723161	23723161	+	Silent	SNP	G	G	A	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	A	23723161	G	A	23723161	2	1	210	1	0	0	0	0	0	0	0	1	157	1280	45	2		2	ACOT9	23	23723161	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	8319938	23723161	131547399	156	13591											
AR	367	hgsc.bcm.edu	37	X	66765167	66765167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	66765167	A	T	66765167	3	4	210	1	0	0	0	0	1	0	0	0	836	188	7	5	181	5	AR	23	66765167	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	43042006	66765167	88505393	157	13592											
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101152941	101152941	+	Silent	SNP	A	A	T	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	T	101152941	A	T	101152941	2	4	210	1	0	0	0	0	0	0	0	1	17703	126	5	5		5	ZMAT1	23	101152941	Silent	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	34387774	101152941	54117619	158	13593											
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152937048	152937048	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	C	152937048	G	C	152937048	3	2	210	1	0	0	0	0	1	0	0	0	12152	971	34	4	561	4	PNCK	23	152937048	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	51784107	152937048	2333512	159	13594											
SLC2A1	6513	ucsc.edu;bcgsc.ca	37	1	43394677	43394677	+	Silent	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	43394677	G	T	43394677	2	4	211	1	0	0	0	0	0	0	0	1	14551	1086	38	4		4	SLC2A1	1	43394677	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		43394677	205855944	1	13595											
HIPK1	204851	broad.mit.edu	37	1	114483094	114483094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	114483094	G	T	114483094	3	4	211	1	0	0	0	0	1	0	0	0	7123	1203	42	4	91	4	HIPK1	1	114483094	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	71088417	114483094	134767527	2	13596											
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153916546	153916546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	153916546	A	G	153916546	3	3	211	1	0	0	0	0	1	0	0	0	4436	304	11	3	4293	3	DENND4B	1	153916546	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	39433452	153916546	95334075	3	13597											
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155175049	155175049	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	155175049	C	T	155175049	2	4	211	1	0	0	0	0	0	0	0	1	15867	639	23	1		1	THBS3	1	155175049	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	1258503	155175049	94075572	4	13598											
CADM3	57863	broad.mit.edu	37	1	159166790	159166790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	159166790	G	T	159166790	3	4	211	1	0	0	0	0	1	0	0	0	2570	1116	39	4	1024	4	CADM3	1	159166790	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	3991741	159166790	90083831	5	13599											
C1orf112	55732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169798424	169798424	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	-	169798424	T	-	169798424	7	5	211	1	0	1	0	1	0	0	0	0	1987	1725	60	0	1190	0	C1orf112	1	169798424	Frame_Shift_Del	DEL	T	TCGA-B1-A657-01A-11D-A31X-10	10631634	169798424	79452197	6	13600											
F13B	2165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	197020002	197020002	+	Silent	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	197020002	T	C	197020002	2	2	211	1	0	0	0	0	0	0	0	1	5343	1606	56	3		3	F13B	1	197020002	Silent	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	27221578	197020002	52230619	7	13601											
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204379052	204379052	+	Silent	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	204379052	A	G	204379052	2	3	211	1	0	0	0	0	0	0	0	1	12374	242	9	3		3	PPP1R15B	1	204379052	Silent	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	7359050	204379052	44871569	8	13602											
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226570817	226570817	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	226570817	T	A	226570817	3	1	211	1	0	0	0	0	1	0	0	0	11461	1783	62	5	2029	5	PARP1	1	226570817	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	22191765	226570817	22679804	9	13603											
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235345203	235345203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	235345203	A	T	235345203	3	4	211	1	0	0	0	0	1	0	0	0	920	101	4	5	927	5	ARID4B	1	235345203	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	8774386	235345203	13905418	10	13604											
FMN2	56776	hgsc.bcm.edu	37	1	240371139	240371139	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	240371139	C	T	240371139	2	4	211	1	0	0	0	0	0	0	0	1	5957	610	22	2		2	FMN2	1	240371139	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	5025936	240371139	8879482	11	13605											
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97215160	97215160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	97215160	C	A	97215160	3	1	211	1	0	0	0	0	1	0	0	0	921	739	26	4	233	4	ARID5A	2	97215160	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10		97215160	145984213	12	13606											
IL1R2	7850	broad.mit.edu	37	2	102638648	102638649	+	Splice_Site	INS	-	-	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	102638649	-	A	102638648	8	5	211	1	0	1	1	0	0	0	1	0	7666	956	33	0	706	0	IL1R2	2	102638648	Splice_Site	INS	-	TCGA-B1-A657-01A-11D-A31X-10	5423488	102638648	140560725	13	13607											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179431535	179431535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	179431535	T	C	179431535	3	2	211	1	0	0	0	0	1	0	0	0	16747	1638	57	3	28803	3	TTN	2	179431535	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	76792887	179431535	63767838	14	13608											
PPARG	5468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	12447397	12447397	+	Silent	SNP	G	G	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	12447397	G	C	12447397	2	2	211	1	0	0	0	0	0	0	0	1	12306	1161	41	4		4	PPARG	3	12447397	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		12447397	185575033	15	13609											
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38101279	38101280	+	In_Frame_Ins	INS	-	-	CAT	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	CAT	38101280	-	CAT	38101279	7	5	211	1	0	1	1	0	0	0	0	0	4554	40	2	0	619	0	DLEC1	3	38101279	In_Frame_Ins	INS	-	TCGA-B1-A657-01A-11D-A31X-10	25653882	38101279	159921151	16	13610											
LIMD1	8994	hgsc.bcm.edu;broad.mit.edu	37	3	45714309	45714327	+	Frame_Shift_Del	DEL	ACAAGTAAGAAGGGATGGG	ACAAGTAAGAAGGGATGGG	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	ACAAGTAAGAAGGGATGGG	ACAAGTAAGAAGGGATGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	-	45714327	ACAAGTAAGAAGGGATGGG	-	45714309	7	5	211	1	0	1	0	1	0	0	0	0	8805	159	6	0	1787	0	LIMD1	3	45714309	Frame_Shift_Del	DEL	ACAAGTAAGAAGGGATGGG	TCGA-B1-A657-01A-11D-A31X-10	7613030	45714309	152308121	17	13611											
DAG1	1605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49547996	49547996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	49547996	T	C	49547996	3	2	211	1	0	0	0	0	1	0	0	0	4227	1580	55	3	31	3	DAG1	3	49547996	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	3833687	49547996	148474434	18	13612											
DNAH1	25981	broad.mit.edu;bcgsc.ca	37	3	52361913	52361913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	52361913	G	A	52361913	3	1	211	1	0	0	0	0	1	0	0	0	4599	1174	41	2	772	2	DNAH1	3	52361913	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	2813917	52361913	145660517	19	13613											
MBNL1	4154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	152163262	152163262	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	152163262	C	T	152163262	2	4	211	1	0	0	0	0	0	0	0	1	9360	816	29	2		2	MBNL1	3	152163262	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	99801349	152163262	45859168	20	13614											
USP13	8975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179462840	179462840	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	179462840	T	A	179462840	3	1	211	1	0	0	0	0	1	0	0	0	17056	1435	50	5	1594	5	USP13	3	179462840	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	27299578	179462840	18559590	21	13615											
MUC4	4585	broad.mit.edu	37	3	195508983	195508983	+	Silent	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	195508983	G	T	195508983	2	4	211	1	0	0	0	0	0	0	0	1	9985	1103	39	4		4	MUC4	3	195508983	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	16046143	195508983	2513447	22	13616											
DLG1	1739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196888577	196888577	+	Silent	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	196888577	A	T	196888577	2	4	211	1	0	0	0	0	0	0	0	1	4556	175	7	5		5	DLG1	3	196888577	Silent	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	1379594	196888577	1133853	23	13617											
CLNK	116449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	10522421	10522421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	10522421	T	G	10522421	3	3	211	1	0	0	0	0	1	0	0	0	3549	1841	64	5	540	5	CLNK	4	10522421	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		10522421	180631855	24	13618											
USP46	64854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	53492228	53492228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	53492228	T	C	53492228	3	2	211	1	0	0	0	0	1	0	0	0	17089	1580	55	3	606	3	USP46	4	53492228	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	42969807	53492228	137662048	25	13619											
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56759888	56759888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	56759888	T	C	56759888	3	2	211	1	0	0	0	0	1	0	0	0	5303	1522	53	3	1949	3	EXOC1	4	56759888	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	3267660	56759888	134394388	26	13620											
CXCL1	2919	broad.mit.edu	37	4	74735703	74735704	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	74735704	-	C	74735703	7	5	211	1	0	1	1	0	0	0	0	0	4079	43	2	0	315	0	CXCL1	4	74735703	Frame_Shift_Ins	INS	-	TCGA-B1-A657-01A-11D-A31X-10	17975815	74735703	116418573	27	13621											
CDKL2	8999	bcgsc.ca	37	4	76521462	76521462	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	76521462	G	T	76521462	4	4	211	1	0	0	0	0	0	1	0	0	3156	1294	45	4	104	4	CDKL2	4	76521462	Nonsense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	1785759	76521462	114632814	28	13622											
ANTXR2	118429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	80976344	80976344	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	-	80976344	C	-	80976344	7	5	211	1	0	1	0	1	0	0	0	0	712	565	20	0	1041	0	ANTXR2	4	80976344	Frame_Shift_Del	DEL	C	TCGA-B1-A657-01A-11D-A31X-10	4454882	80976344	110177932	29	13623											
FAT1	2195	broad.mit.edu	37	4	187541450	187541450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	187541450	C	A	187541450	3	1	211	1	0	0	0	0	1	0	0	0	5696	739	26	4	7548	4	FAT1	4	187541450	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	106565106	187541450	3612826	30	13624											
ZNF474	133923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121487756	121487756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	121487756	C	A	121487756	3	1	211	1	0	0	0	0	1	0	0	0	17944	565	20	4	73	4	ZNF474	5	121487756	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10		121487756	59427504	31	13625											
NKX2-5	1482	broad.mit.edu	37	5	172659726	172659726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	172659726	T	G	172659726	3	3	211	1	0	0	0	0	1	0	0	0	10460	1638	57	5	157	5	NKX2-5	5	172659726	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	51171970	172659726	8255534	32	13626											
NKX2-5	1482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172660100	172660100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	172660100	C	A	172660100	3	1	211	1	0	0	0	0	1	0	0	0	10460	680	24	4	531	4	NKX2-5	5	172660100	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	374	172660100	8255160	33	13627											
FGFR4	2264	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	176520385	176520385	+	Silent	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	176520385	A	G	176520385	2	3	211	1	0	0	0	0	0	0	0	1	5875	243	9	3		3	FGFR4	5	176520385	Silent	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	3860285	176520385	4394875	34	13628											
MUC21	394263	broad.mit.edu	37	6	30954813	30954813	+	Silent	SNP	T	T	C	rs9262371		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	30954813	T	C	30954813	2	2	211	1	0	0	0	0	0	0	0	1	9984	1490	52	3		3	MUC21	6	30954813	Silent	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		30954813	140160254	35	13629											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38863980	38863980	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	38863980	A	C	38863980	3	2	211	1	0	0	0	0	1	0	0	0	4609	69	3	5	8490	5	DNAH8	6	38863980	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	7909167	38863980	132251087	36	13630											
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53380907	53380907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	53380907	C	T	53380907	3	4	211	1	0	0	0	0	1	0	0	0	6302	695	24	2	1405	2	GCLC	6	53380907	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	14516927	53380907	117734160	37	13631	174	2									
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53380911	53380911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	53380911	A	G	53380911	3	3	211	1	0	0	0	0	1	0	0	0	6302	72	3	3	1409	3	GCLC	6	53380911	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	4	53380911	117734156	38	13632	174	2									
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	71236101	71236101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	71236101	A	G	71236101	3	3	211	1	0	0	0	0	1	0	0	0	5452	449	16	3	3442	3	FAM135A	6	71236101	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	17855190	71236101	99878966	39	13633											
PSMB1	5689	broad.mit.edu	37	6	170852793	170852793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	170852793	G	T	170852793	3	4	211	1	0	0	0	0	1	0	0	0	12684	1203	42	4	408	4	PSMB1	6	170852793	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	99616692	170852793	262274	40	13634											
FAM20C	56975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	193541	193541	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	193541	C	T	193541	2	4	211	1	0	0	0	0	0	0	0	1	5543	639	23	1		1	FAM20C	7	193541	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10		193541	158945122	41	13635			1	23		2	2	21	N	T_C	6.525025e-05
FAM20C	56975	hgsc.bcm.edu;broad.mit.edu	37	7	193561	193561	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	193561	T	A	193561	4	1	211	1	0	0	0	0	0	1	0	0	5543	1821	63	5	364	5	FAM20C	7	193561	Nonsense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	20	193561	158945102	42	13636			1	23		2	2	21	N	T_C	6.525025e-05
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	11582721	11582721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	11582721	A	C	11582721	3	2	211	1	0	0	0	0	1	0	0	0	15891	98	4	5	3588	5	THSD7A	7	11582721	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	11389160	11582721	147555942	43	13637											
TMED4	222068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44621390	44621390	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	44621390	T	G	44621390	3	3	211	1	0	0	0	0	1	0	0	0	16018	1792	62	5	506	5	TMED4	7	44621390	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	33038669	44621390	114517273	44	13638											
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	108154603	108154603	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	-	108154603	T	-	108154603	7	5	211	1	0	1	0	1	0	0	0	0	12178	1606	56	0	1189	0	PNPLA8	7	108154603	Frame_Shift_Del	DEL	T	TCGA-B1-A657-01A-11D-A31X-10	63533213	108154603	50984060	45	13639											
FLNC	2318	broad.mit.edu	37	7	128489441	128489441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	128489441	G	T	128489441	3	4	211	1	0	0	0	0	1	0	0	0	5942	1319	46	4	5126	4	FLNC	7	128489441	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	20334838	128489441	30649222	46	13640											
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	132570441	132570442	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	132570442	-	G	132570441	7	5	211	1	0	1	1	0	0	0	0	0	3319	188	7	0	265	0	CHCHD3	7	132570441	Frame_Shift_Ins	INS	-	TCGA-B1-A657-01A-11D-A31X-10	4081000	132570441	26568222	47	13641											
XRCC2	7516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	152345944	152345944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	152345944	G	T	152345944	3	4	211	1	0	0	0	0	1	0	0	0	17465	1000	35	4	220	4	XRCC2	7	152345944	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	19775503	152345944	6792719	48	13642											
WDR67	93594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124154514	124154514	+	Missense_Mutation	SNP	A	A	T	rs144810574	byfrequency;alternate_allele	TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	124154514	A	T	124154514	3	4	211	1	0	0	0	0	1	0	0	0	17330	14	1	5	2727	5	WDR67	8	124154514	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10		124154514	22209508	49	13643											
FAM49B	51571	broad.mit.edu;bcgsc.ca	37	8	130866576	130866576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	130866576	G	T	130866576	3	4	211	1	0	0	0	0	1	0	0	0	5583	1203	42	4	546	4	FAM49B	8	130866576	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	6712062	130866576	15497446	50	13644											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139707081	139707081	+	Silent	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	139707081	C	A	139707081	2	1	211	1	0	0	0	0	0	0	0	1	3683	697	25	4		4	COL22A1	8	139707081	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	8840505	139707081	6656941	51	13645											
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144892982	144892982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	144892982	A	T	144892982	3	4	211	1	0	0	0	0	1	0	0	0	13950	214	8	5	3793	5	SCRIB	8	144892982	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	5185901	144892982	1471040	52	13646											
KIAA2026	158358	broad.mit.edu;bcgsc.ca	37	9	6007447	6007447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	6007447	T	C	6007447	3	2	211	1	0	0	0	0	1	0	0	0	8277	1551	54	3	6002	3	KIAA2026	9	6007447	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		6007447	135205984	53	13647											
SHB	6461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	37919918	37919918	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	-	37919918	C	-	37919918	7	5	211	1	0	1	0	1	0	0	0	0	14281	565	20	0	103	0	SHB	9	37919918	Frame_Shift_Del	DEL	C	TCGA-B1-A657-01A-11D-A31X-10	31912471	37919918	103293513	54	13648											
PBX3	5090	ucsc.edu;bcgsc.ca	37	9	128723051	128723051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	128723051	C	T	128723051	3	4	211	1	0	0	0	0	1	0	0	0	11501	536	19	1	954	1	PBX3	9	128723051	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	90803133	128723051	12490380	55	13649											
RHOBTB1	9886	broad.mit.edu;bcgsc.ca	37	10	62637691	62637691	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	62637691	G	A	62637691	2	1	211	1	0	0	0	0	0	0	0	1	13346	1195	42	2		2	RHOBTB1	10	62637691	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		62637691	72897056	56	13650											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89692845	89692845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	-	89692845	A	-	89692845	7	5	211	1	0	1	0	1	0	0	0	0	12748	130	5	0	347	0	PTEN	10	89692845	Frame_Shift_Del	DEL	A	TCGA-B1-A657-01A-11D-A31X-10	27055154	89692845	45841902	57	13651											
SYCE1	93426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	135372389	135372390	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	TT	135372390	AG	TT	135372389	3	4	211	1	0	0	0	0	1	0	0	0	15440	188	7	5	875	5	SYCE1	10	135372389	Missense_Mutation	DNP	AG	TCGA-B1-A657-01A-11D-A31X-10	45679544	135372389	162358	58	13652											
DAK	26007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61111339	61111339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	61111339	A	G	61111339	3	3	211	1	0	0	0	0	1	0	0	0	4230	159	6	3	1036	3	DAK	11	61111339	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10		61111339	73895177	59	13653											
CCDC87	55231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66359427	66359427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	66359427	C	T	66359427	3	4	211	1	0	0	0	0	1	0	0	0	2864	739	26	2	1493	2	CCDC87	11	66359427	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	5248088	66359427	68647089	60	13654											
ANKRD13D	338692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67058950	67058950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	67058950	C	A	67058950	3	1	211	1	0	0	0	0	1	0	0	0	644	623	22	4	369	4	ANKRD13D	11	67058950	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	699523	67058950	67947566	61	13655											
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	67267651	67267651	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	67267651	G	A	67267651	2	1	211	1	0	0	0	0	0	0	0	1	11957	1219	43	2		2	PITPNM1	11	67267651	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	208701	67267651	67738865	62	13656											
LRP6	4040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12303827	12303827	+	Silent	SNP	G	G	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	12303827	G	C	12303827	2	2	211	1	0	0	0	0	0	0	0	1	8969	929	33	4		4	LRP6	12	12303827	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		12303827	121548068	63	13657											
PTPRR	5801	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	71139777	71139777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	71139777	T	A	71139777	3	1	211	1	0	0	0	0	1	0	0	0	12823	1635	57	5	1181	5	PTPRR	12	71139777	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	58835950	71139777	62712118	64	13658											
SIRT4	23409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120750516	120750517	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	-	120750517	AA	-	120750516	7	5	211	1	0	1	0	1	0	0	0	0	14353	246	9	0	761	0	SIRT4	12	120750516	Frame_Shift_Del	DEL	AA	TCGA-B1-A657-01A-11D-A31X-10	49610739	120750516	13101379	65	13659	175	2									
SIRT4	23409	bcgsc.ca	37	12	120750518	120750518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	120750518	G	C	120750518	3	2	211	1	0	0	0	0	1	0	0	0	14353	971	34	4	763	4	SIRT4	12	120750518	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	2	120750518	13101377	66	13660	175	2									
GSX1	219409	hgsc.bcm.edu	37	13	28367053	28367053	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	28367053	C	T	28367053	2	4	211	1	0	0	0	0	0	0	0	1	6856	796	28	2		2	GSX1	13	28367053	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10		28367053	86802825	67	13661											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	35758158	35758158	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	35758158	T	G	35758158	3	3	211	1	0	0	0	0	1	0	0	0	10194	1783	62	5	4995	5	NBEA	13	35758158	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	7391105	35758158	79411720	68	13662											
GPR137C	283554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53099007	53099007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	53099007	T	A	53099007	3	1	211	1	0	0	0	0	1	0	0	0	6654	1580	55	5	861	5	GPR137C	14	53099007	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		53099007	54250533	69	13663											
SRP14	6727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40331316	40331316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	40331316	A	G	40331316	3	3	211	1	0	0	0	0	1	0	0	0	15165	217	8	3	428	3	SRP14	15	40331316	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10		40331316	62200076	70	13664											
ZFYVE19	84936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41099608	41099608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	41099608	A	G	41099608	3	3	211	1	0	0	0	0	1	0	0	0	17677	391	14	3		3	ZFYVE19	15	41099608	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	768292	41099608	61431784	71	13665											
MFAP1	4236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44105507	44105507	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	44105507	C	T	44105507	2	4	211	1	0	0	0	0	0	0	0	1	9520	912	32	2		2	MFAP1	15	44105507	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	3005899	44105507	58425885	72	13666											
SECISBP2L	9728	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49304926	49304926	+	Silent	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	49304926	A	T	49304926	2	4	211	1	0	0	0	0	0	0	0	1	14020	175	7	5		5	SECISBP2L	15	49304926	Silent	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	5199419	49304926	53226466	73	13667											
PIF1	80119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65114469	65114469	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	65114469	A	T	65114469	3	4	211	1	0	0	0	0	1	0	0	0	11890	127	5	5	1152	5	PIF1	15	65114469	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	15809543	65114469	37416923	74	13668											
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73581573	73581573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	73581573	C	A	73581573	3	1	211	1	0	0	0	0	1	0	0	0	10343	507	18	4	3834	4	NEO1	15	73581573	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	8467104	73581573	28949819	75	13669											
PML	5371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74325643	74325643	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	74325643	G	A	74325643	2	1	211	1	0	0	0	0	0	0	0	1	12142	991	35	2		2	PML	15	74325643	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	744070	74325643	28205749	76	13670											
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85476453	85476453	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	85476453	G	A	85476453	2	1	211	1	0	0	0	0	0	0	0	1	14544	1103	39	1		1	SLC28A1	15	85476453	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	11150810	85476453	17054939	77	13671											
ZNF597	146434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3487293	3487293	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	3487293	A	T	3487293	3	4	211	1	0	0	0	0	1	0	0	0	18039	11	1	5	872	5	ZNF597	16	3487293	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10		3487293	86867460	78	13672											
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31092685	31092685	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	31092685	C	T	31092685	2	4	211	1	0	0	0	0	0	0	0	1	18074	610	22	2		2	ZNF646	16	31092685	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	27605392	31092685	59262068	79	13673											
PRSS36	146547	broad.mit.edu	37	16	31154780	31154780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	31154780	G	T	31154780	3	4	211	1	0	0	0	0	1	0	0	0	12635	1203	42	4	1616	4	PRSS36	16	31154780	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	62095	31154780	59199973	80	13674											
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31335987	31335987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	31335987	C	A	31335987	3	1	211	1	0	0	0	0	1	0	0	0	7894	623	22	4	2246	4	ITGAM	16	31335987	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	181207	31335987	59018766	81	13675											
CLEC18A	348174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69988283	69988283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	69988283	T	C	69988283	3	2	211	1	0	0	0	0	1	0	0	0	3504	1551	54	3	273	3	CLEC18A	16	69988283	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	38652296	69988283	20366470	82	13676											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72984405	72984405	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	72984405	A	C	72984405	3	2	211	1	0	0	0	0	1	0	0	0	17646	275	10	5	7964	5	ZFHX3	16	72984405	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	2996122	72984405	17370348	83	13677											
JPH3	57338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87678517	87678517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	87678517	G	A	87678517	3	1	211	1	0	0	0	0	1	0	0	0	7969	1116	39	1	1042	1	JPH3	16	87678517	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	14694112	87678517	2676236	84	13678											
KLHL11	55175	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40010765	40010766	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	CT	40010766	TG	CT	40010765	3	2	211	1	0	0	0	0	1	0	0	0	8374	1821	63	3	776	3	KLHL11	17	40010765	Missense_Mutation	DNP	TG	TCGA-B1-A657-01A-11D-A31X-10		40010765	41184445	85	13679											
KIF18B	146909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43009571	43009571	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	43009571	C	T	43009571	2	4	211	1	0	0	0	0	0	0	0	1	8288	796	28	2		2	KIF18B	17	43009571	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	2998806	43009571	38185639	86	13680											
TLK2	11011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60663585	60663585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	60663585	C	A	60663585	3	1	211	1	0	0	0	0	1	0	0	0	15956	477	17	4	1516	4	TLK2	17	60663585	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	17654014	60663585	20531625	87	13681											
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2939488	2939488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	2939488	T	C	2939488	3	2	211	1	0	0	0	0	1	0	0	0	8926	1551	54	3	1938	3	LPIN2	18	2939488	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		2939488	75137760	88	13682											
PTPRS	5802	bcgsc.ca	37	19	5214700	5214700	+	Silent	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	5214700	G	T	5214700	2	4	211	1	0	0	0	0	0	0	0	1	12824	1115	39	4		4	PTPRS	19	5214700	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		5214700	53914283	89	13683											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8183905	8183905	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	8183905	G	A	8183905	2	1	211	1	0	0	0	0	0	0	0	1	5711	1159	40	1		1	FBN3	19	8183905	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	2969205	8183905	50945078	90	13684											
PRDX2	7001	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	12911694	12911694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	12911694	T	C	12911694	3	2	211	1	0	0	0	0	1	0	0	0	12475	1609	56	3	491	3	PRDX2	19	12911694	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	4727789	12911694	46217289	91	13685											
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	34710315	T	G	34710315	2	3	211	1	0	0	0	0	0	0	0	1	9061	1538	54	5		5	LSM14A	19	34710315	Silent	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	21798621	34710315	24418668	92	13686											
ZNF576	79177	broad.mit.edu	37	19	44103092	44103092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	44103092	G	T	44103092	3	4	211	1	0	0	0	0	1	0	0	0	18020	962	34	4	201	4	ZNF576	19	44103092	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	9392777	44103092	15025891	93	13687											
PVR	5817	broad.mit.edu;bcgsc.ca	37	19	45162149	45162149	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	45162149	C	T	45162149	2	4	211	1	0	0	0	0	0	0	0	1	12850	564	20	2		2	PVR	19	45162149	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	1059057	45162149	13966834	94	13688											
FBXO46	23403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46215777	46215777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	46215777	A	G	46215777	3	3	211	1	0	0	0	0	1	0	0	0	5762	188	7	3	838	3	FBXO46	19	46215777	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	1053628	46215777	12913206	95	13689											
DEFB118	117285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	29960794	29960794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	29960794	G	T	29960794	3	4	211	1	0	0	0	0	1	0	0	0	4408	1029	36	4	199	4	DEFB118	20	29960794	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		29960794	33064726	96	13690											
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30388879	30388879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	30388879	G	T	30388879	3	4	211	1	0	0	0	0	1	0	0	0	16444	1319	46	4	2302	4	TPX2	20	30388879	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	428085	30388879	32636641	97	13691											
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24579518	24579518	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	24579518	T	A	24579518	3	1	211	1	0	0	0	0	1	0	0	0	15420	1580	55	5	353	5	SUSD2	22	24579518	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		24579518	26725048	98	13692											
PIM3	415116	broad.mit.edu	37	22	50355280	50355280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	C	50355280	T	C	50355280	3	2	211	1	0	0	0	0	1	0	0	0	11936	1580	55	3	451	3	PIM3	22	50355280	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	25775762	50355280	949286	99	13693											
RAI2	10742	broad.mit.edu	37	X	17819166	17819166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	G	17819166	T	G	17819166	3	3	211	1	0	0	0	0	1	0	0	0	13022	1609	56	5	631	5	RAI2	23	17819166	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		17819166	137451394	100	13694											
SNX12	29934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70280928	70280928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	70280928	G	T	70280928	3	4	211	1	0	0	0	0	1	0	0	0	14896	1377	48	4	65	4	SNX12	23	70280928	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	52461762	70280928	84989632	101	13695											
BRWD3	254065	bcgsc.ca	37	X	79932816	79932816	+	Silent	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	T	79932816	G	T	79932816	2	4	211	1	0	0	0	0	0	0	0	1	1528	1219	43	4		4	BRWD3	23	79932816	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	9651888	79932816	75337744	102	13696											
SLC9A6	10479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135098843	135098843	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	A	135098843	T	A	135098843	3	1	211	1	0	0	0	0	1	0	0	0	14731	1609	56	5	1314	5	SLC9A6	23	135098843	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	55166027	135098843	20171717	103	13697											
ADAM30	11085	broad.mit.edu	37	1	120438863	120438863	+	Missense_Mutation	SNP	G	G	A			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	A	120438863	G	A	120438863	3	1	212	1	0	0	0	0	1	0	0	0	248	1290	45	2	2279	2	ADAM30	1	120438863	Missense_Mutation	SNP	G	TCGA-B2-3923-01A-01D-1458-08		120438863	128811758	1	13698											
C3orf20	84077	broad.mit.edu	37	3	14731559	14731559	+	Silent	SNP	C	C	T			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	T	14731559	C	T	14731559	2	4	212	1	0	0	0	0	0	0	0	1	2215	518	18	2		2	C3orf20	3	14731559	Silent	SNP	C	TCGA-B2-3923-01A-01D-1458-08		14731559	183290871	2	13699											
NGLY1	55768	broad.mit.edu	37	3	25761622	25761622	+	Missense_Mutation	SNP	C	C	A			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	A	25761622	C	A	25761622	3	1	212	1	0	0	0	0	1	0	0	0	10405	594	21	4	300	4	NGLY1	3	25761622	Missense_Mutation	SNP	C	TCGA-B2-3923-01A-01D-1458-08	11030063	25761622	172260808	3	13700											
SMARCA5	8467	broad.mit.edu	37	4	144457701	144457701	+	Silent	SNP	A	A	G			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	G	144457701	A	G	144457701	2	3	212	1	0	0	0	0	0	0	0	1	14784	98	4	3		3	SMARCA5	4	144457701	Silent	SNP	A	TCGA-B2-3923-01A-01D-1458-08		144457701	46696575	4	13701											
PJA2	9867	broad.mit.edu	37	5	108698654	108698654	+	Missense_Mutation	SNP	A	A	C			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	C	108698654	A	C	108698654	3	2	212	1	0	0	0	0	1	0	0	0	11969	156	6	5	607	5	PJA2	5	108698654	Missense_Mutation	SNP	A	TCGA-B2-3923-01A-01D-1458-08		108698654	72216606	5	13702											
HYAL4	23553	broad.mit.edu	37	7	123516948	123516948	+	Silent	SNP	C	C	T			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	T	123516948	C	T	123516948	2	4	212	1	0	0	0	0	0	0	0	1	7473	581	21	2		2	HYAL4	7	123516948	Silent	SNP	C	TCGA-B2-3923-01A-01D-1458-08		123516948	35621715	6	13703											
TSGA13	114960	broad.mit.edu	37	7	130357610	130357610	+	Missense_Mutation	SNP	G	G	A			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	A	130357610	G	A	130357610	3	1	212	1	0	0	0	0	1	0	0	0	16631	1059	37	1	345	1	TSGA13	7	130357610	Missense_Mutation	SNP	G	TCGA-B2-3923-01A-01D-1458-08	6840662	130357610	28781053	7	13704											
GLDC	2731	broad.mit.edu	37	9	6592871	6592871	+	Missense_Mutation	SNP	G	G	A			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	A	6592871	G	A	6592871	3	1	212	1	0	0	0	0	1	0	0	0	6440	1057	37	1	1745	1	GLDC	9	6592871	Missense_Mutation	SNP	G	TCGA-B2-3923-01A-01D-1458-08		6592871	134620560	8	13705											
SLC24A2	25769	broad.mit.edu	37	9	19520958	19520960	+	In_Frame_Del	DEL	CGG	CGG	-			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	-	19520960	CGG	-	19520958	7	5	212	1	0	1	0	1	0	0	0	0	14479	652	23	0	323	0	SLC24A2	9	19520958	In_Frame_Del	DEL	CGG	TCGA-B2-3923-01A-01D-1458-08	12928087	19520958	121692473	9	13706											
PALM2-AKAP2	445815	broad.mit.edu	37	9	112899854	112899854	+	Missense_Mutation	SNP	T	T	C			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	C	112899854	T	C	112899854	3	2	212	1	0	0	0	0	1	0	0	0	11417	1696	59	3	2060	3	PALM2-AKAP2	9	112899854	Missense_Mutation	SNP	T	TCGA-B2-3923-01A-01D-1458-08	93378896	112899854	28313577	10	13707											
CCKBR	887	broad.mit.edu	37	11	6292569	6292569	+	Silent	SNP	C	C	T	rs138218747	byFrequency	TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	T	6292569	C	T	6292569	2	4	212	1	0	0	0	0	0	0	0	1	2883	547	19	1		1	CCKBR	11	6292569	Silent	SNP	C	TCGA-B2-3923-01A-01D-1458-08		6292569	128713947	11	13708											
SCUBE2	57758	broad.mit.edu	37	11	9077430	9077430	+	Missense_Mutation	SNP	T	T	A			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	A	9077430	T	A	9077430	3	1	212	1	0	0	0	0	1	0	0	0	13958	1667	58	5	2025	5	SCUBE2	11	9077430	Missense_Mutation	SNP	T	TCGA-B2-3923-01A-01D-1458-08	2784861	9077430	125929086	12	13709											
USP15	9958	broad.mit.edu	37	12	62708660	62708662	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	-	62708662	TGT	-	62708660	7	5	212	1	0	1	0	1	0	0	0	0	17058	1461	51	0	452	0	USP15	12	62708660	In_Frame_Del	DEL	TGT	TCGA-B2-3923-01A-01D-1458-08		62708660	71143235	13	13710											
SUCLA2	8803	broad.mit.edu	37	13	48528324	48528324	+	Missense_Mutation	SNP	G	G	A			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	A	48528324	G	A	48528324	3	1	212	1	0	0	0	0	1	0	0	0	15375	1377	48	2	349	2	SUCLA2	13	48528324	Missense_Mutation	SNP	G	TCGA-B2-3923-01A-01D-1458-08		48528324	66641554	14	13711											
AHSA1	10598	broad.mit.edu	37	14	77935516	77935516	+	Missense_Mutation	SNP	G	G	T			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	T	77935516	G	T	77935516	3	4	212	1	0	0	0	0	1	0	0	0	418	1116	39	4	975	4	AHSA1	14	77935516	Missense_Mutation	SNP	G	TCGA-B2-3923-01A-01D-1458-08		77935516	29414024	15	13712											
TMC3	342125	broad.mit.edu	37	15	81637115	81637115	+	Missense_Mutation	SNP	C	C	T			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	T	81637115	C	T	81637115	3	4	212	1	0	0	0	0	1	0	0	0	15998	536	19	1	1832	1	TMC3	15	81637115	Missense_Mutation	SNP	C	TCGA-B2-3923-01A-01D-1458-08		81637115	20894277	16	13713											
GAN	8139	broad.mit.edu	37	16	81391531	81391531	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	A	81391531	C	A	81391531	4	1	212	1	0	0	0	0	0	1	0	0	6239	838	29	4	986	4	GAN	16	81391531	Nonsense_Mutation	SNP	C	TCGA-B2-3923-01A-01D-1458-08		81391531	8963222	17	13714											
TRPM4	54795	broad.mit.edu	37	19	49669420	49669420	+	Missense_Mutation	SNP	C	C	A			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	A	49669420	C	A	49669420	3	1	212	1	0	0	0	0	1	0	0	0	16600	507	18	4	225	4	TRPM4	19	49669420	Missense_Mutation	SNP	C	TCGA-B2-3923-01A-01D-1458-08		49669420	9459563	18	13715											
FERMT1	55612	broad.mit.edu	37	20	6060186	6060186	+	Missense_Mutation	SNP	G	G	A			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	A	6060186	G	A	6060186	3	1	212	1	0	0	0	0	1	0	0	0	5824	1294	45	2	284	2	FERMT1	20	6060186	Missense_Mutation	SNP	G	TCGA-B2-3923-01A-01D-1458-08		6060186	56965334	19	13716											
DOPEY2	9980	broad.mit.edu	37	21	37653832	37653832	+	Missense_Mutation	SNP	T	T	C			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	C	37653832	T	C	37653832	3	2	212	1	0	0	0	0	1	0	0	0	4710	1464	51	3	6205	3	DOPEY2	21	37653832	Missense_Mutation	SNP	T	TCGA-B2-3923-01A-01D-1458-08		37653832	10476063	20	13717											
NUP62CL	54830	broad.mit.edu	37	X	106397335	106397335	+	Missense_Mutation	SNP	A	A	C			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	C	106397335	A	C	106397335	3	2	212	1	0	0	0	0	1	0	0	0	10776	214	8	5	234	5	NUP62CL	23	106397335	Missense_Mutation	SNP	A	TCGA-B2-3923-01A-01D-1458-08		106397335	48873225	21	13718											
DCAF12L2	340578	broad.mit.edu	37	X	125299313	125299313	+	Missense_Mutation	SNP	C	C	T			TCGA-B2-3923-01A-01D-1458-08	TCGA-B2-3923-10A-01D-1458-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	055b5dbe-6a29-4ad7-87ce-1b8c4c1211b4	d7f13006-b937-472c-a6cb-5dd7104e7a2f	T	125299313	C	T	125299313	3	4	212	1	0	0	0	0	1	0	0	0	4267	768	27	1	800	1	DCAF12L2	23	125299313	Missense_Mutation	SNP	C	TCGA-B2-3923-01A-01D-1458-08	18901978	125299313	29971247	22	13719											
DENND2C	163259	broad.mit.edu;hgsc.bcm.edu	37	1	115166246	115166246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	A	115166246	C	A	115166246	3	1	213	1	0	0	0	0	1	0	0	0	4432	680	24	4	1854	4	DENND2C	1	115166246	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-01D-1458-08		115166246	134084375	1	13720											
PGLYRP3	114771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153277480	153277480	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	C	153277480	G	C	153277480	3	2	213	1	0	0	0	0	1	0	0	0	11802	1319	46	4	726	4	PGLYRP3	1	153277480	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-01D-1458-08	38111234	153277480	95973141	2	13721											
SELP	6403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169566355	169566355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	169566355	G	T	169566355	3	4	213	1	0	0	0	0	1	0	0	0	14032	1058	37	4	751	4	SELP	1	169566355	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-01D-1458-08	16288875	169566355	79684266	3	13722											
CEP350	9857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	180063129	180063129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	180063129	G	T	180063129	3	4	213	1	0	0	0	0	1	0	0	0	3256	1029	36	4	8019	4	CEP350	1	180063129	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-01D-1458-08	10496774	180063129	69187492	4	13723											
MYO1B	4430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	192250811	192250811	+	Splice_Site	SNP	G	G	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	192250811	G	T	192250811	5	4	213	1	0	0	0	0	0	0	1	0	10076	1275	44	4	1613	4	MYO1B	2	192250811	Splice_Site	SNP	G	TCGA-B2-3924-01A-01D-1458-08		192250811	50948562	5	13724											
VHL	7428	broad.mit.edu	37	3	10183725	10183725	+	Nonsense_Mutation	SNP	C	A	A	rs5030826		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	A	10183725	A	A	10183725	4	1	213	1	0	0	0	0	0	1	0	0	17174	893	31	4	196	4	VHL	3	10183725	Nonsense_Mutation	SNP	C	TCGA-B2-3924-01A-01D-1458-08		10183725	187838705	6	13725											
BSN	8927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49662500	49662500	+	Missense_Mutation	SNP	A	A	G	rs140305957	byfrequency	TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	G	49662500	A	G	49662500	3	3	213	1	0	0	0	0	1	0	0	0	1532	217	8	3	323	3	BSN	3	49662500	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-01D-1458-08	39478775	49662500	148359930	7	13726											
HAPLN1	1404	broad.mit.edu;hgsc.bcm.edu	37	5	82940357	82940357	+	Silent	SNP	G	G	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	82940357	G	T	82940357	2	4	213	1	0	0	0	0	0	0	0	1	6961	1074	38	4		4	HAPLN1	5	82940357	Silent	SNP	G	TCGA-B2-3924-01A-01D-1458-08		82940357	97974903	8	13727											
CSNK2B	1460	hgsc.bcm.edu	37	6	31637658	31637659	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	-	31637659	CC	-	31637658	7	5	213	1	0	1	0	1	0	0	0	0	3961	842	30	0	625	0	CSNK2B	6	31637658	Frame_Shift_Del	DEL	CC	TCGA-B2-3924-01A-01D-1458-08		31637658	139477409	9	13728											
COL1A2	1278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94038888	94038888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	94038888	G	T	94038888	3	4	213	1	0	0	0	0	1	0	0	0	3680	971	34	4	974	4	COL1A2	7	94038888	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-01D-1458-08		94038888	65099775	10	13729											
NAPRT1	93100	broad.mit.edu;hgsc.bcm.edu	37	8	144657686	144657686	+	Missense_Mutation	SNP	C	C	A	rs148462517	byfrequency;alternate_allele	TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	A	144657686	C	A	144657686	3	1	213	1	0	0	0	0	1	0	0	0	10172	536	19	4	434	4	NAPRT1	8	144657686	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-01D-1458-08		144657686	1706336	11	13730											
UPF2	26019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	11985089	11985089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	11985089	C	T	11985089	3	4	213	1	0	0	0	0	1	0	0	0	17016	864	30	2	589	2	UPF2	10	11985089	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-01D-1458-08		11985089	123549658	12	13731											
MARK2	2011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63670173	63670173	+	Silent	SNP	G	G	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	63670173	G	T	63670173	2	4	213	1	0	0	0	0	0	0	0	1	9320	1161	41	4		4	MARK2	11	63670173	Silent	SNP	G	TCGA-B2-3924-01A-01D-1458-08		63670173	71336343	13	13732											
OR10G4	390264	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123887007	123887007	+	Silent	SNP	C	C	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	123887007	C	T	123887007	2	4	213	1	0	0	0	0	0	0	0	1	10908	610	22	2		2	OR10G4	11	123887007	Silent	SNP	C	TCGA-B2-3924-01A-01D-1458-08	60216834	123887007	11119509	14	13733											
ZFYVE26	23503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	68274120	68274120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	68274120	C	T	68274120	3	4	213	1	0	0	0	0	1	0	0	0	17680	855	30	2	6890	2	ZFYVE26	14	68274120	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-01D-1458-08		68274120	39075420	15	13734											
APBA2	321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	29346528	29346528	+	Silent	SNP	G	G	A	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	A	29346528	G	A	29346528	2	1	213	1	0	0	0	0	0	0	0	1	757	1074	38	1		1	APBA2	15	29346528	Silent	SNP	G	TCGA-B2-3924-01A-01D-1458-08		29346528	73184864	16	13735											
UACA	55075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	70961034	70961034	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	G	70961034	T	G	70961034	3	3	213	1	0	0	0	0	1	0	0	0	16836	1838	64	5	2277	5	UACA	15	70961034	Missense_Mutation	SNP	T	TCGA-B2-3924-01A-01D-1458-08	41614506	70961034	31570358	17	13736											
SREBF1	6720	hgsc.bcm.edu	37	17	17716753	17716754	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	C	17716754	-	C	17716753	7	5	213	1	0	1	1	0	0	0	0	0	15153	1203	42	0	308	0	SREBF1	17	17716753	Frame_Shift_Ins	INS	-	TCGA-B2-3924-01A-01D-1458-08		17716753	63478457	18	13737											
C17orf101	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	80369360	80369360	+	Silent	SNP	G	G	T	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	T	80369360	G	T	80369360	2	4	213	1	0	0	0	0	0	0	0	1	1850	1280	45	4		4	C17orf101	17	80369360	Silent	SNP	G	TCGA-B2-3924-01A-01D-1458-08	62652607	80369360	825850	19	13738											
ZNF382	84911	hgsc.bcm.edu;ucsc.edu	37	19	37118014	37118015	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	A	37118015	-	A	37118014	7	5	213	1	0	1	1	0	0	0	0	0	17885	933	33	0	1225	0	ZNF382	19	37118014	Frame_Shift_Ins	INS	-	TCGA-B2-3924-01A-01D-1458-08		37118014	22010969	20	13739											
PRR12	57479	broad.mit.edu	37	19	50100809	50100810	+	Frame_Shift_Del	DEL	CT	-	-	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	-	50100810	-	-	50100809	7	5	213	1	0	1	0	1	0	0	0	0	12594	797	28	0	3231	0	PRR12	19	50100809	Frame_Shift_Del	DEL	CT	TCGA-B2-3924-01A-01D-1458-08	12982795	50100809	9028174	21	13740											
ASPHD2	57168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	26830026	26830026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-3924-01A-01D-1458-08	TCGA-B2-3924-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e99fdd6-c16d-41ce-98a7-accd55ec1e4a	058d79f1-cfc9-486c-9be6-b42902cb74f6	G	26830026	A	G	26830026	3	3	213	1	0	0	0	0	1	0	0	0	1055	217	8	3	447	3	ASPHD2	22	26830026	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-01D-1458-08		26830026	24474540	22	13741											
CSMD2	114784	hgsc.bcm.edu;ucsc.edu	37	1	34286089	34286091	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	-	34286091	TTT	-	34286089	7	5	214	1	0	1	0	1	0	0	0	0	3947	1617	56	0	9651	0	CSMD2	1	34286089	In_Frame_Del	DEL	TTT	TCGA-B2-3924-01A-02D-1386-10		34286089	214964532	1	13742											
SYDE2	84144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	85630328	85630328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	85630328	T	C	85630328	3	2	214	1	0	0	0	0	1	0	0	0	15448	1580	55	3	626	3	SYDE2	1	85630328	Missense_Mutation	SNP	T	TCGA-B2-3924-01A-02D-1386-10	51344239	85630328	163620293	2	13743											
ARF1	375	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	228285383	228285383	+	Silent	SNP	G	G	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	228285383	G	A	228285383	2	1	214	1	0	0	0	0	0	0	0	1	844	1219	43	2		2	ARF1	1	228285383	Silent	SNP	G	TCGA-B2-3924-01A-02D-1386-10	142655055	228285383	20965238	3	13744											
ARID4B	51742	hgsc.bcm.edu;ucsc.edu	37	1	235420512	235420512	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	-	235420512	A	-	235420512	7	5	214	1	0	1	0	1	0	0	0	0	920	159	6	0	3876	0	ARID4B	1	235420512	Frame_Shift_Del	DEL	A	TCGA-B2-3924-01A-02D-1386-10	7135129	235420512	13830109	4	13745											
NEB	4703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152348619	152348619	+	Silent	SNP	A	A	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	152348619	A	C	152348619	2	2	214	1	0	0	0	0	0	0	0	1	10309	407	15	5		5	NEB	2	152348619	Silent	SNP	A	TCGA-B2-3924-01A-02D-1386-10		152348619	90850754	5	13746											
VIL1	7429	hgsc.bcm.edu;ucsc.edu	37	2	219299338	219299339	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	219299339	-	T	219299338	7	5	214	1	0	1	1	0	0	0	0	0	17176	668	24	0	1640	0	VIL1	2	219299338	Frame_Shift_Ins	INS	-	TCGA-B2-3924-01A-02D-1386-10	66950719	219299338	23900035	6	13747											
PTPRG	5793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	62268432	62268432	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	-	62268432	C	-	62268432	7	5	214	1	0	1	0	1	0	0	0	0	12815	827	29	0	4053	0	PTPRG	3	62268432	Frame_Shift_Del	DEL	C	TCGA-B2-3924-01A-02D-1386-10		62268432	135753998	7	13748											
COL6A6	131873	broad.mit.edu	37	3	130284103	130284103	+	Silent	SNP	A	G	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	130284103	G	G	130284103	2	3	214	1	0	0	0	0	0	0	0	1	3705	291	11	3		3	COL6A6	3	130284103	Silent	SNP	A	TCGA-B2-3924-01A-02D-1386-10	68015671	130284103	67738327	8	13749											
MUC4	4585	broad.mit.edu	37	3	195513806	195513806	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	195513806	G	G	195513806	3	3	214	1	0	0	0	0	1	0	0	0	9985	826	29	4		4	MUC4	3	195513806	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	65229703	195513806	2508624	9	13750											
RNF212	285498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	1075211	1075211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	1075211	C	G	1075211	3	3	214	1	0	0	0	0	1	0	0	0	13489	884	31	4	449	4	RNF212	4	1075211	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10		1075211	190079065	10	13751											
PCDH7	5099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	30725280	30725280	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	30725280	A	T	30725280	4	4	214	1	0	0	0	0	0	1	0	0	11523	131	5	5	2238	5	PCDH7	4	30725280	Nonsense_Mutation	SNP	A	TCGA-B2-3924-01A-02D-1386-10	29650069	30725280	160428996	11	13752											
MYO10	4651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	16699579	16699579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	16699579	T	C	16699579	3	2	214	1	0	0	0	0	1	0	0	0	10069	1696	59	3	2704	3	MYO10	5	16699579	Missense_Mutation	SNP	T	TCGA-B2-3924-01A-02D-1386-10		16699579	164215681	12	13753											
RAD50	10111	broad.mit.edu;hgsc.bcm.edu	37	5	131977874	131977874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	131977874	A	C	131977874	3	2	214	1	0	0	0	0	1	0	0	0	12997	101	4	5	3855	5	RAD50	5	131977874	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-02D-1386-10	115278295	131977874	48937386	13	13754											
PCDHA8	56140	broad.mit.edu;hgsc.bcm.edu	37	5	140222015	140222015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	140222015	C	T	140222015	3	4	214	1	0	0	0	0	1	0	0	0	11537	739	26	2	1111	2	PCDHA8	5	140222015	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	8244141	140222015	40693245	14	13755											
PCDHB16	57717	broad.mit.edu	37	5	140564230	140564230	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	140564230	G	G	140564230	3	3	214	1	0	0	0	0	1	0	0	0	11548	893	31	4	2098	4	PCDHB16	5	140564230	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	342215	140564230	40351030	15	13756											
PCDHGA7	56108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140762931	140762931	+	Silent	SNP	C	C	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	140762931	C	T	140762931	2	4	214	1	0	0	0	0	0	0	0	1	11566	767	27	1		1	PCDHGA7	5	140762931	Silent	SNP	C	TCGA-B2-3924-01A-02D-1386-10	198701	140762931	40152329	16	13757											
CNOT6	57472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179998388	179998388	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	179998388	G	C	179998388	3	2	214	1	0	0	0	0	1	0	0	0	3624	1291	45	4	1455	4	CNOT6	5	179998388	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-02D-1386-10	39235457	179998388	916872	17	13758											
MDGA1	266727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	37615095	37615095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	37615095	C	T	37615095	3	4	214	1	0	0	0	0	1	0	0	0	9413	797	28	2	999	2	MDGA1	6	37615095	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10		37615095	133499972	18	13759											
PKHD1	5314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	51612957	51612957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	51612957	A	G	51612957	3	3	214	1	0	0	0	0	1	0	0	0	11978	72	3	3	2846	3	PKHD1	6	51612957	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-02D-1386-10	13997862	51612957	119502110	19	13760											
DOPEY1	23033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	83823098	83823098	+	Silent	SNP	A	A	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	83823098	A	G	83823098	2	3	214	1	0	0	0	0	0	0	0	1	4709	146	6	3		3	DOPEY1	6	83823098	Silent	SNP	A	TCGA-B2-3924-01A-02D-1386-10	32210141	83823098	87291969	20	13761											
MDN1	23195	hgsc.bcm.edu;ucsc.edu	37	6	90440533	90440534	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	90440534	-	T	90440533	7	5	214	1	0	1	1	0	0	0	0	0	9422	214	8	0	12010	0	MDN1	6	90440533	Frame_Shift_Ins	INS	-	TCGA-B2-3924-01A-02D-1386-10	6617435	90440533	80674534	21	13762											
MAP7	9053	hgsc.bcm.edu;ucsc.edu	37	6	136710548	136710548	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	-	136710548	C	-	136710548	7	5	214	1	0	1	0	1	0	0	0	0	9273	864	30	0	1957	0	MAP7	6	136710548	Frame_Shift_Del	DEL	C	TCGA-B2-3924-01A-02D-1386-10	46270015	136710548	34404519	22	13763											
AUTS2	26053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	70228160	70228160	+	Silent	SNP	G	G	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	70228160	G	A	70228160	2	1	214	1	0	0	0	0	0	0	0	1	1225	962	34	2		2	AUTS2	7	70228160	Silent	SNP	G	TCGA-B2-3924-01A-02D-1386-10		70228160	88910503	23	13764											
BAZ1B	9031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	72877401	72877401	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	72877401	G	C	72877401	3	2	214	1	0	0	0	0	1	0	0	0	1330	933	33	4	1383	4	BAZ1B	7	72877401	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-02D-1386-10	2649241	72877401	86261262	24	13765											
ASNS	440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	97487671	97487671	+	Silent	SNP	C	C	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	97487671	C	A	97487671	2	1	214	1	0	0	0	0	0	0	0	1	1048	813	29	4		4	ASNS	7	97487671	Silent	SNP	C	TCGA-B2-3924-01A-02D-1386-10	24610270	97487671	61650992	25	13766											
KCNB2	9312	hgsc.bcm.edu;ucsc.edu	37	8	73849964	73849964	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	-	73849964	A	-	73849964	7	5	214	1	0	1	0	1	0	0	0	0	8020	247	9	0	2380	0	KCNB2	8	73849964	Frame_Shift_Del	DEL	A	TCGA-B2-3924-01A-02D-1386-10		73849964	72514058	26	13767											
LRRCC1	85444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	86050475	86050475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	86050475	A	C	86050475	3	2	214	1	0	0	0	0	1	0	0	0	9033	391	14	5	2761	5	LRRCC1	8	86050475	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-02D-1386-10	12200511	86050475	60313547	27	13768											
MFSD3	113655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145735861	145735861	+	Silent	SNP	C	C	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	145735861	C	A	145735861	2	1	214	1	0	0	0	0	0	0	0	1	9539	610	22	4		4	MFSD3	8	145735861	Silent	SNP	C	TCGA-B2-3924-01A-02D-1386-10	59685386	145735861	628161	28	13769											
PKN3	29941	hgsc.bcm.edu;ucsc.edu	37	9	131477498	131477498	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	-	131477498	G	-	131477498	7	5	214	1	0	1	0	1	0	0	0	0	11988	1116	39	0	1754	0	PKN3	9	131477498	Frame_Shift_Del	DEL	G	TCGA-B2-3924-01A-02D-1386-10		131477498	9735933	29	13770											
UPF2	26019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	11998363	11998363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	11998363	G	A	11998363	3	1	214	1	0	0	0	0	1	0	0	0	17016	1348	47	2	1328	2	UPF2	10	11998363	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-02D-1386-10		11998363	123536384	30	13771											
C10orf118	55088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	115889683	115889683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	115889683	C	A	115889683	3	1	214	1	0	0	0	0	1	0	0	0	1589	565	20	4	563	4	C10orf118	10	115889683	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	103891320	115889683	19645064	31	13772											
ATHL1	80162	broad.mit.edu;ucsc.edu	37	11	289868	289868	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	289868	C	C	289868	3	2	214	1	0	0	0	0	1	0	0	0	1104	188	7	5	54	5	ATHL1	11	289868	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-02D-1386-10		289868	134716648	32	13773											
B4GALNT4	338707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	375478	375478	+	Silent	SNP	C	C	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	375478	C	T	375478	2	4	214	1	0	0	0	0	0	0	0	1	1269	639	23	1		1	B4GALNT4	11	375478	Silent	SNP	C	TCGA-B2-3924-01A-02D-1386-10	85610	375478	134631038	33	13774											
ALKBH3	221120	hgsc.bcm.edu;ucsc.edu	37	11	43941531	43941532	+	Frame_Shift_Ins	INS	-	-	ATCC	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	ATCC	43941532	-	ATCC	43941531	7	5	214	1	0	1	1	0	0	0	0	0	528	1522	53	0	866	0	ALKBH3	11	43941531	Frame_Shift_Ins	INS	-	TCGA-B2-3924-01A-02D-1386-10	43566053	43941531	91064985	34	13775											
OR4P4	81300	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55406262	55406262	+	Silent	SNP	C	C	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	55406262	C	A	55406262	2	1	214	1	0	0	0	0	0	0	0	1	11087	816	29	4		4	OR4P4	11	55406262	Silent	SNP	C	TCGA-B2-3924-01A-02D-1386-10	11464731	55406262	79600254	35	13776											
MPZL2	10205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118133354	118133354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	118133354	A	G	118133354	3	3	214	1	0	0	0	0	1	0	0	0	9757	420	15	3	424	3	MPZL2	11	118133354	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-02D-1386-10	62727092	118133354	16873162	36	13777											
CD3G	917	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118221315	118221315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	118221315	T	C	118221315	3	2	214	1	0	0	0	0	1	0	0	0	3015	1551	54	3	370	3	CD3G	11	118221315	Missense_Mutation	SNP	T	TCGA-B2-3924-01A-02D-1386-10	87961	118221315	16785201	37	13778											
ADAMTS15	170689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	130341137	130341137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	130341137	C	T	130341137	3	4	214	1	0	0	0	0	1	0	0	0	260	507	18	2	1963	2	ADAMTS15	11	130341137	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	12119822	130341137	4665379	38	13779											
C1S	716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7177661	7177661	+	Silent	SNP	T	T	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	7177661	T	G	7177661	2	3	214	1	0	0	0	0	0	0	0	1	1976	1596	56	5		5	C1S	12	7177661	Silent	SNP	T	TCGA-B2-3924-01A-02D-1386-10		7177661	126674234	39	13780											
COL2A1	1280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48381066	48381066	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	48381066	C	G	48381066	3	3	214	1	0	0	0	0	1	0	0	0	3689	797	28	4	3351	4	COL2A1	12	48381066	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	41203405	48381066	85470829	40	13781											
RDH5	5959	hgsc.bcm.edu;ucsc.edu	37	12	56118202	56118203	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	56118203	-	G	56118202	7	5	214	1	0	1	1	0	0	0	0	0	13208	623	22	0	844	0	RDH5	12	56118202	Frame_Shift_Ins	INS	-	TCGA-B2-3924-01A-02D-1386-10	7737136	56118202	77733693	41	13782											
OLFM4	10562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	53624673	53624673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	53624673	T	C	53624673	3	2	214	1	0	0	0	0	1	0	0	0	10862	1609	56	3	1318	3	OLFM4	13	53624673	Missense_Mutation	SNP	T	TCGA-B2-3924-01A-02D-1386-10		53624673	61545205	42	13783											
PIBF1	10464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	73482729	73482729	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	73482729	C	T	73482729	4	4	214	1	0	0	0	0	0	1	0	0	11886	827	29	2	1591	2	PIBF1	13	73482729	Nonsense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	19858056	73482729	41687149	43	13784											
C14orf135	0	broad.mit.edu	37	14	60591443	60591443	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	-	60591443	-	-	60591443	7	5	214	1	0	1	0	1	0	0	0	0	1747	1725	60	0	1878	0	C14orf135	14	60591443	Frame_Shift_Del	DEL	T	TCGA-B2-3924-01A-02D-1386-10		60591443	46758097	44	13785											
MAPKBP1	23005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42107967	42107967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	42107967	T	A	42107967	3	1	214	1	0	0	0	0	1	0	0	0	9299	1522	53	5	1527	5	MAPKBP1	15	42107967	Missense_Mutation	SNP	T	TCGA-B2-3924-01A-02D-1386-10		42107967	60423425	45	13786											
MAN2C1	4123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75659878	75659878	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	75659878	C	G	75659878	3	3	214	1	0	0	0	0	1	0	0	0	9225	507	18	4	2893	4	MAN2C1	15	75659878	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	33551911	75659878	26871514	46	13787											
PSMA4	5685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	78834926	78834926	+	Missense_Mutation	SNP	C	C	A	rs149336836	alternate_allele	TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	78834926	C	A	78834926	3	1	214	1	0	0	0	0	1	0	0	0	12679	536	19	4	158	4	PSMA4	15	78834926	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	3175048	78834926	23696466	47	13788											
C15orf42	0	hgsc.bcm.edu;ucsc.edu	37	15	90168863	90168864	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	90168864	-	A	90168863	7	5	214	1	0	1	1	0	0	0	0	0	1798	933	33	0	5400	0	C15orf42	15	90168863	Frame_Shift_Ins	INS	-	TCGA-B2-3924-01A-02D-1386-10	11333937	90168863	12362529	48	13789											
CHD2	1106	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	93489310	93489310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	93489310	T	C	93489310	3	2	214	1	0	0	0	0	1	0	0	0	3327	1522	53	3	1283	3	CHD2	15	93489310	Missense_Mutation	SNP	T	TCGA-B2-3924-01A-02D-1386-10	3320447	93489310	9042082	49	13790											
SRL	6345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4245571	4245571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	4245571	C	T	4245571	3	4	214	1	0	0	0	0	1	0	0	0	15162	768	27	1	836	1	SRL	16	4245571	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10		4245571	86109182	50	13791											
ATF7IP2	80063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	10567377	10567377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	10567377	A	G	10567377	3	3	214	1	0	0	0	0	1	0	0	0	1088	130	5	3	1494	3	ATF7IP2	16	10567377	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-02D-1386-10	6321806	10567377	79787376	51	13792											
C16orf62	57020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	19627466	19627466	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	19627466	G	C	19627466	3	2	214	1	0	0	0	0	1	0	0	0	1827	943	33	4	1104	4	C16orf62	16	19627466	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-02D-1386-10	9060089	19627466	70727287	52	13793											
RBBP6	5930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	24583192	24583192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	24583192	A	G	24583192	3	3	214	1	0	0	0	0	1	0	0	0	13116	130	5	3	4929	3	RBBP6	16	24583192	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-02D-1386-10	4955726	24583192	65771561	53	13794											
MYO15A	51168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18044110	18044110	+	Silent	SNP	C	C	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	18044110	C	T	18044110	2	4	214	1	0	0	0	0	0	0	0	1	10070	668	24	2		2	MYO15A	17	18044110	Silent	SNP	C	TCGA-B2-3924-01A-02D-1386-10		18044110	63151100	54	13795											
SSH2	85464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27977810	27977810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	27977810	T	C	27977810	3	2	214	1	0	0	0	0	1	0	0	0	15197	1406	49	3	3280	3	SSH2	17	27977810	Missense_Mutation	SNP	T	TCGA-B2-3924-01A-02D-1386-10	9933700	27977810	53217400	55	13796											
SLC4A1	6521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42328875	42328875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	42328875	G	A	42328875	3	1	214	1	0	0	0	0	1	0	0	0	14663	1145	40	1	354	1	SLC4A1	17	42328875	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-02D-1386-10	14351065	42328875	38866335	56	13797											
ANKFN1	162282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	54452062	54452062	+	Silent	SNP	A	A	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	54452062	A	G	54452062	2	3	214	1	0	0	0	0	0	0	0	1	625	349	13	3		3	ANKFN1	17	54452062	Silent	SNP	A	TCGA-B2-3924-01A-02D-1386-10	12123187	54452062	26743148	57	13798											
AKAP1	8165	hgsc.bcm.edu	37	17	55183751	55183771	+	In_Frame_Del	DEL	GCTTGGATAGAAATGAGGAGG	GCTTGGATAGAAATGAGGAGG	-	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	GCTTGGATAGAAATGAGGAGG	GCTTGGATAGAAATGAGGAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	-	55183771	GCTTGGATAGAAATGAGGAGG	-	55183751	7	5	214	1	0	1	0	1	0	0	0	0	445	971	34	0	928	0	AKAP1	17	55183751	In_Frame_Del	DEL	GCTTGGATAGAAATGAGGAGG	TCGA-B2-3924-01A-02D-1386-10	731689	55183751	26011459	58	13799											
NPLOC4	55666	broad.mit.edu;ucsc.edu	37	17	79589205	79589205	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	79589205	T	T	79589205	3	4	214	1	0	0	0	0	1	0	0	0	10593	69	3	5	1690	5	NPLOC4	17	79589205	Missense_Mutation	SNP	A	TCGA-B2-3924-01A-02D-1386-10	24405454	79589205	1606005	59	13800											
EMILIN2	84034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	2891711	2891711	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	2891711	G	C	2891711	3	2	214	1	0	0	0	0	1	0	0	0	5096	1232	43	4	1600	4	EMILIN2	18	2891711	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-02D-1386-10		2891711	75185537	60	13801											
TTC9B	148014	broad.mit.edu	37	19	40723224	40723224	+	Silent	SNP	A	G	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	40723224	G	G	40723224	2	3	214	1	0	0	0	0	0	0	0	1	16728	273	10	3		3	TTC9B	19	40723224	Silent	SNP	A	TCGA-B2-3924-01A-02D-1386-10		40723224	18405759	61	13802											
C19orf61	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44237823	44237823	+	Silent	SNP	G	G	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	44237823	G	A	44237823	2	1	214	1	0	0	0	0	0	0	0	1	1945	991	35	2		2	C19orf61	19	44237823	Silent	SNP	G	TCGA-B2-3924-01A-02D-1386-10	3514599	44237823	14891160	62	13803											
CPNE1	8904	broad.mit.edu;ucsc.edu	37	20	34214664	34214664	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	34214664	G	G	34214664	3	3	214	1	0	0	0	0	1	0	0	0	3813	1551	54	5	323	5	CPNE1	20	34214664	Missense_Mutation	SNP	T	TCGA-B2-3924-01A-02D-1386-10		34214664	28810856	63	13804											
TMEM189	387521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	48760154	48760154	+	Silent	SNP	C	C	T	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	T	48760154	C	T	48760154	2	4	214	1	0	0	0	0	0	0	0	1	16123	796	28	2		2	TMEM189	20	48760154	Silent	SNP	C	TCGA-B2-3924-01A-02D-1386-10	14545490	48760154	14265366	64	13805											
KRTAP10-6	386674	broad.mit.edu	37	21	46012291	46012291	+	Silent	SNP	A	G	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	46012291	G	G	46012291	2	3	214	1	0	0	0	0	0	0	0	1	8520	157	6	3		3	KRTAP10-6	21	46012291	Silent	SNP	A	TCGA-B2-3924-01A-02D-1386-10		46012291	2117604	65	13806											
SEPT5	5413	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	19707850	19707850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	19707850	C	G	19707850	3	3	214	1	0	0	0	0	1	0	0	0	14080	739	26	4	392	4	SEPT5	22	19707850	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10		19707850	31596716	66	13807											
SLC2A11	66035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24226915	24226915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	24226915	C	A	24226915	3	1	214	1	0	0	0	0	1	0	0	0	14553	681	24	4	1496	4	SLC2A11	22	24226915	Missense_Mutation	SNP	C	TCGA-B2-3924-01A-02D-1386-10	4519065	24226915	27077651	67	13808											
C22orf30	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	32112375	32112375	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	C	32112375	G	C	32112375	3	2	214	1	0	0	0	0	1	0	0	0	2144	1299	45	4	5029	4	C22orf30	22	32112375	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-02D-1386-10	7885460	32112375	19192191	68	13809											
PKDREJ	10343	broad.mit.edu	37	22	46654831	46654831	+	Silent	SNP	A	G	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	46654831	G	G	46654831	2	3	214	1	0	0	0	0	0	0	0	1	11977	291	11	3		3	PKDREJ	22	46654831	Silent	SNP	A	TCGA-B2-3924-01A-02D-1386-10	14542456	46654831	4649735	69	13810											
EIF2S3	1968	hgsc.bcm.edu	37	X	24073090	24073091	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	GGG	24073091	-	GGG	24073090	7	5	214	1	0	1	1	0	0	0	0	0	5013	768	27	0	7	0	EIF2S3	23	24073090	In_Frame_Ins	INS	-	TCGA-B2-3924-01A-02D-1386-10		24073090	131197470	70	13811											
TMLHE	55217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	154754204	154754204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	A	154754204	G	A	154754204	3	1	214	1	0	0	0	0	1	0	0	0	16244	1290	45	2	1158	2	TMLHE	23	154754204	Missense_Mutation	SNP	G	TCGA-B2-3924-01A-02D-1386-10	130681114	154754204	516356	71	13812	176	2									
TMLHE	55217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	154754205	154754205	+	Silent	SNP	A	A	G	novel		TCGA-B2-3924-01A-02D-1386-10	TCGA-B2-3924-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e6cf808-de43-4898-8e62-6ffef3f90eed	28aac82d-72ad-4956-a3c3-022718b48fdd	G	154754205	A	G	154754205	2	3	214	1	0	0	0	0	0	0	0	1	16244	291	11	3		3	TMLHE	23	154754205	Silent	SNP	A	TCGA-B2-3924-01A-02D-1386-10	1	154754205	516355	72	13813	176	2									
TNFRSF4	7293	broad.mit.edu;hgsc.bcm.edu	37	1	1149473	1149473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	T	1149473	G	T	1149473	3	4	215	1	0	0	0	0	1	0	0	0	16309	1116	39	4	826	4	TNFRSF4	1	1149473	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08		1149473	248101148	1	13814											
HSPG2	3339	broad.mit.edu	37	1	22166039	22166039	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	C	22166039	C	C	22166039	3	2	215	1	0	0	0	0	1	0	0	0	7437	1194	42	4	3561	4	HSPG2	1	22166039	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08	21016566	22166039	227084582	2	13815											
CIB4	130106	broad.mit.edu;hgsc.bcm.edu	37	2	26806745	26806745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	G	26806745	A	G	26806745	3	3	215	1	0	0	0	0	1	0	0	0	3425	101	4	3	219	3	CIB4	2	26806745	Missense_Mutation	SNP	A	TCGA-B2-4098-01A-01D-1458-08		26806745	216392628	3	13816											
SIX3	6496	broad.mit.edu;hgsc.bcm.edu	37	2	45171737	45171737	+	Silent	SNP	C	C	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	45171737	C	A	45171737	2	1	215	1	0	0	0	0	0	0	0	1	14361	697	25	4		4	SIX3	2	45171737	Silent	SNP	C	TCGA-B2-4098-01A-01D-1458-08	18364992	45171737	198027636	4	13817											
CEP68	23177	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	65299148	65299148	+	Silent	SNP	T	T	G	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	G	65299148	T	G	65299148	2	3	215	1	0	0	0	0	0	0	0	1	3260	1596	56	5		5	CEP68	2	65299148	Silent	SNP	T	TCGA-B2-4098-01A-01D-1458-08	20127411	65299148	177900225	5	13818											
NFE2L2	4780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	178098799	178098799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	G	178098799	T	G	178098799	3	3	215	1	0	0	0	0	1	0	0	0	10375	1490	52	5	1587	5	NFE2L2	2	178098799	Missense_Mutation	SNP	T	TCGA-B2-4098-01A-01D-1458-08	112799651	178098799	65100574	6	13819											
B3GNT7	93010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	232263303	232263303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	C	232263303	G	C	232263303	3	2	215	1	0	0	0	0	1	0	0	0	1262	991	35	4	879	4	B3GNT7	2	232263303	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08	54164504	232263303	10936070	7	13820											
GLB1	2720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33038793	33038793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	33038793	G	A	33038793	3	1	215	1	0	0	0	0	1	0	0	0	6434	1348	47	2	259	2	GLB1	3	33038793	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08		33038793	164983637	8	13821											
ABTB1	80325	broad.mit.edu;hgsc.bcm.edu	37	3	127399686	127399686	+	RNA	SNP	T	T	C	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	C	127399686	T	C	127399686	1	2	215	0	1	0	0	0	0	0	0	0	102	1595	55	3		3	ABTB1	3	127399686	RNA	SNP	T	TCGA-B2-4098-01A-01D-1458-08	94360893	127399686	70622744	9	13822											
LRRC33	375387	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	196388312	196388312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	196388312	G	A	196388312	3	1	215	1	0	0	0	0	1	0	0	0	8995	1348	47	2	1804	2	LRRC33	3	196388312	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08	68988626	196388312	1634118	10	13823	177	2									
LRRC33	375387	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	196388313	196388313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	T	196388313	G	T	196388313	3	4	215	1	0	0	0	0	1	0	0	0	8995	1232	43	4	1805	4	LRRC33	3	196388313	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08	1	196388313	1634117	11	13824	177	2									
SEC31A	22872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83788377	83788377	+	Silent	SNP	A	A	G	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	G	83788377	A	G	83788377	2	3	215	1	0	0	0	0	0	0	0	1	14011	214	8	3		3	SEC31A	4	83788377	Silent	SNP	A	TCGA-B2-4098-01A-01D-1458-08		83788377	107365899	12	13825											
SORBS2	8470	hgsc.bcm.edu;ucsc.edu	37	4	186545056	186545067	+	In_Frame_Del	DEL	CATGTCCCGGGG	CATGTCCCGGGG	-	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	CATGTCCCGGGG	CATGTCCCGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	-	186545067	CATGTCCCGGGG	-	186545056	7	5	215	1	0	1	0	1	0	0	0	0	14941	594	21	0	1823	0	SORBS2	4	186545056	In_Frame_Del	DEL	CATGTCCCGGGG	TCGA-B2-4098-01A-01D-1458-08	102756679	186545056	4609220	13	13826											
ATXN1	6310	broad.mit.edu;ucsc.edu	37	6	16327452	16327452	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	C	16327452	C	C	16327452	3	2	215	1	0	0	0	0	1	0	0	0	1209	1348	47	4	1365	4	ATXN1	6	16327452	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08		16327452	154787615	14	13827											
GNMT	27232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	42931107	42931107	+	Silent	SNP	G	G	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	42931107	G	A	42931107	2	1	215	1	0	0	0	0	0	0	0	1	6547	1277	45	2		2	GNMT	6	42931107	Silent	SNP	G	TCGA-B2-4098-01A-01D-1458-08	26603655	42931107	128183960	15	13828											
KIAA1244	57221	hgsc.bcm.edu	37	6	138657590	138657591	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	-	138657591	CA	-	138657590	7	5	215	1	0	1	0	1	0	0	0	0	8224	697	25	0	6635	0	KIAA1244	6	138657590	Frame_Shift_Del	DEL	CA	TCGA-B2-4098-01A-01D-1458-08	95726483	138657590	32457477	16	13829											
MEPCE	56257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100031142	100031142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	100031142	T	A	100031142	3	1	215	1	0	0	0	0	1	0	0	0	9484	1638	57	5	2049	5	MEPCE	7	100031142	Missense_Mutation	SNP	T	TCGA-B2-4098-01A-01D-1458-08		100031142	59107521	17	13830											
RPS20	6224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	56986629	56986629	+	Silent	SNP	G	G	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	56986629	G	A	56986629	2	1	215	1	0	0	0	0	0	0	0	1	13645	987	35	2		2	RPS20	8	56986629	Silent	SNP	G	TCGA-B2-4098-01A-01D-1458-08		56986629	89377393	18	13831											
YME1L1	10730	hgsc.bcm.edu	37	10	27436462	27436463	+	Frame_Shift_Del	DEL	GC	GC	-	rs151242856	by1000genomes	TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	-	27436463	GC	-	27436462	7	5	215	1	0	1	0	1	0	0	0	0	17499	1319	46	0	2089	0	YME1L1	10	27436462	Frame_Shift_Del	DEL	GC	TCGA-B2-4098-01A-01D-1458-08		27436462	108098285	19	13832											
ZDHHC16	84287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99211881	99211881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	T	99211881	C	T	99211881	3	4	215	1	0	0	0	0	1	0	0	0	17618	855	30	2	284	2	ZDHHC16	10	99211881	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-01D-1458-08	71775419	99211881	36322866	20	13833											
CDHR5	53841	hgsc.bcm.edu	37	11	617406	617407	+	In_Frame_Ins	INS	-	-	CGCCCT	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	CGCCCT	617407	-	CGCCCT	617406	7	5	215	1	0	1	1	0	0	0	0	0	3124	1087	38	0	58	0	CDHR5	11	617406	In_Frame_Ins	INS	-	TCGA-B2-4098-01A-01D-1458-08		617406	134389110	21	13834											
IGF2	3481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	2154815	2154815	+	Silent	SNP	G	G	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	2154815	G	A	2154815	2	1	215	1	0	0	0	0	0	0	0	1	7579	991	35	2		2	IGF2	11	2154815	Silent	SNP	G	TCGA-B2-4098-01A-01D-1458-08	1537409	2154815	132851701	22	13835											
GPR152	390212	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	67220120	67220120	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	C	67220120	A	C	67220120	3	2	215	1	0	0	0	0	1	0	0	0	6665	420	15	5	1340	5	GPR152	11	67220120	Missense_Mutation	SNP	A	TCGA-B2-4098-01A-01D-1458-08	65065305	67220120	67786396	23	13836											
TSPAN19	144448	broad.mit.edu	37	12	85423547	85423547	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	-	85423547	-	-	85423547	7	5	215	1	0	1	0	1	0	0	0	0	16655	855	30	0	685	0	TSPAN19	12	85423547	Frame_Shift_Del	DEL	C	TCGA-B2-4098-01A-01D-1458-08		85423547	48428348	24	13837											
BTBD11	121551	hgsc.bcm.edu;ucsc.edu	37	12	107713815	107713815	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	-	107713815	G	-	107713815	7	5	215	1	0	1	0	1	0	0	0	0	1541	962	34	0	1100	0	BTBD11	12	107713815	Frame_Shift_Del	DEL	G	TCGA-B2-4098-01A-01D-1458-08	22290268	107713815	26138080	25	13838											
GATC	283459	hgsc.bcm.edu	37	12	120884306	120884307	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	G	120884307	-	G	120884306	7	5	215	1	0	1	1	0	0	0	0	0	6269	1580	55	0	25	0	GATC	12	120884306	Frame_Shift_Ins	INS	-	TCGA-B2-4098-01A-01D-1458-08	13170491	120884306	12967589	26	13839											
ARG2	384	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	68086727	68086727	+	Silent	SNP	C	C	G	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	G	68086727	C	G	68086727	2	3	215	1	0	0	0	0	0	0	0	1	858	842	30	4		4	ARG2	14	68086727	Silent	SNP	C	TCGA-B2-4098-01A-01D-1458-08		68086727	39262813	27	13840											
ODF3L1	161753	hgsc.bcm.edu;ucsc.edu	37	15	76019407	76019407	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	-	76019407	C	-	76019407	7	5	215	1	0	1	0	1	0	0	0	0	10838	506	18	0	365	0	ODF3L1	15	76019407	Frame_Shift_Del	DEL	C	TCGA-B2-4098-01A-01D-1458-08		76019407	26511985	28	13841											
CORO1A	11151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30198495	30198495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	30198495	G	A	30198495	3	1	215	1	0	0	0	0	1	0	0	0	3755	1145	40	1	601	1	CORO1A	16	30198495	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08		30198495	60156258	29	13842											
TMC8	147138	hgsc.bcm.edu	37	17	76127732	76127732	+	Silent	SNP	G	G	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	76127732	G	A	76127732	2	1	215	1	0	0	0	0	0	0	0	1	16003	1364	48	2		2	TMC8	17	76127732	Silent	SNP	G	TCGA-B2-4098-01A-01D-1458-08		76127732	5067478	30	13843											
SSTR4	6754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	23016583	23016583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	23016583	G	A	23016583	3	1	215	1	0	0	0	0	1	0	0	0	15212	1203	42	2	465	2	SSTR4	20	23016583	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08		23016583	40008937	31	13844											
OGFR	11054	broad.mit.edu	37	20	61442846	61442846	+	Silent	SNP	G	A	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	61442846	A	A	61442846	2	1	215	1	0	0	0	0	0	0	0	1	10850	1190	42	2		2	OGFR	20	61442846	Silent	SNP	G	TCGA-B2-4098-01A-01D-1458-08	38426263	61442846	1582674	32	13845											
C22orf42	150297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	32555106	32555106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	A	32555106	G	A	32555106	3	1	215	1	0	0	0	0	1	0	0	0	2151	1174	41	2	694	2	C22orf42	22	32555106	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-01D-1458-08		32555106	18749460	33	13846											
KDM6A	7403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	44949174	44949174	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-4098-01A-01D-1458-08	TCGA-B2-4098-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	76faa3c6-4474-433c-89e3-e78b68573ac5	db55656f-778d-4864-8679-61caa7e12c02	-	44949174	A	-	44949174	7	5	215	1	0	1	0	1	0	0	0	0	8144	202	7	0	3833	0	KDM6A	23	44949174	Frame_Shift_Del	DEL	A	TCGA-B2-4098-01A-01D-1458-08		44949174	110321386	34	13847											
YY1AP1	55249	broad.mit.edu;hgsc.bcm.edu	37	1	155640162	155640162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	155640162	A	T	155640162	3	4	216	1	0	0	0	0	1	0	0	0	17520	188	7	5	1591	5	YY1AP1	1	155640162	Missense_Mutation	SNP	A	TCGA-B2-4098-01A-02D-1386-10		155640162	93610459	1	13848											
C1orf25	0	hgsc.bcm.edu;ucsc.edu	37	1	185094228	185094228	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	-	185094228	A	-	185094228	7	5	216	1	0	1	0	1	0	0	0	0	2036	246	9	0	610	0	C1orf25	1	185094228	Frame_Shift_Del	DEL	A	TCGA-B2-4098-01A-02D-1386-10	29454066	185094228	64156393	2	13849											
ELK4	2005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205592865	205592865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	C	205592865	T	C	205592865	3	2	216	1	0	0	0	0	1	0	0	0	5063	1609	56	3	1303	3	ELK4	1	205592865	Missense_Mutation	SNP	T	TCGA-B2-4098-01A-02D-1386-10	20498637	205592865	43657756	3	13850											
OR2W3	343171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	248059095	248059095	+	Silent	SNP	G	G	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	248059095	G	T	248059095	2	4	216	1	0	0	0	0	0	0	0	1	11040	1335	47	4		4	OR2W3	1	248059095	Silent	SNP	G	TCGA-B2-4098-01A-02D-1386-10	42466230	248059095	1191526	4	13851											
DNMT3A	1788	broad.mit.edu	37	2	25470497	25470497	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	25470497	T	T	25470497	3	4	216	1	0	0	0	0	1	0	0	0	4678	768	27	1	1825	1	DNMT3A	2	25470497	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-02D-1386-10		25470497	217728876	5	13852											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179484778	179484778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	179484778	C	T	179484778	3	4	216	1	0	0	0	0	1	0	0	0	16747	826	29	2	61783	2	TTN	2	179484778	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-02D-1386-10	154014281	179484778	63714595	6	13853											
C2orf88	84281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	191064624	191064624	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	G	191064624	C	G	191064624	3	3	216	1	0	0	0	0	1	0	0	0	2204	681	24	4	40	4	C2orf88	2	191064624	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-02D-1386-10	11579846	191064624	52134749	7	13854											
ILKAP	80895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	239102922	239102922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	239102922	C	T	239102922	3	4	216	1	0	0	0	0	1	0	0	0	7721	884	31	1	1046	1	ILKAP	2	239102922	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-02D-1386-10	48038298	239102922	4096451	8	13855											
ZPLD1	131368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	102157367	102157367	+	Silent	SNP	T	T	C	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	C	102157367	T	C	102157367	2	2	216	1	0	0	0	0	0	0	0	1	18233	1742	61	3		3	ZPLD1	3	102157367	Silent	SNP	T	TCGA-B2-4098-01A-02D-1386-10		102157367	95865063	9	13856											
UMPS	7372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	124457035	124457035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	124457035	G	A	124457035	3	1	216	1	0	0	0	0	1	0	0	0	16993	1291	45	2	941	2	UMPS	3	124457035	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-02D-1386-10	22299668	124457035	73565395	10	13857											
RPN1	6184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128350832	128350832	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	128350832	T	A	128350832	4	1	216	1	0	0	0	0	0	1	0	0	13620	1559	54	5	1049	5	RPN1	3	128350832	Nonsense_Mutation	SNP	T	TCGA-B2-4098-01A-02D-1386-10	3893797	128350832	69671598	11	13858											
SKIL	6498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	170110164	170110164	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	C	170110164	A	C	170110164	3	2	216	1	0	0	0	0	1	0	0	0	14371	15	1	5	2036	5	SKIL	3	170110164	Missense_Mutation	SNP	A	TCGA-B2-4098-01A-02D-1386-10	41759332	170110164	27912266	12	13859											
SMARCAD1	56916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	95199614	95199614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	G	95199614	A	G	95199614	3	3	216	1	0	0	0	0	1	0	0	0	14785	410	15	3	2186	3	SMARCAD1	4	95199614	Missense_Mutation	SNP	A	TCGA-B2-4098-01A-02D-1386-10		95199614	95954662	13	13860											
GRIA2	2891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	158142838	158142838	+	Silent	SNP	C	C	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	158142838	C	T	158142838	2	4	216	1	0	0	0	0	0	0	0	1	6775	755	27	1		1	GRIA2	4	158142838	Silent	SNP	C	TCGA-B2-4098-01A-02D-1386-10	62943224	158142838	33011438	14	13861											
AP3S1	1176	broad.mit.edu	37	5	115177762	115177762	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	C	115177762	C	C	115177762	3	2	216	1	0	0	0	0	1	0	0	0	749	130	5	5	30	5	AP3S1	5	115177762	Missense_Mutation	SNP	A	TCGA-B2-4098-01A-02D-1386-10		115177762	65737498	15	13862											
PDGFRB	5159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149499609	149499609	+	Silent	SNP	G	G	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	149499609	G	A	149499609	2	1	216	1	0	0	0	0	0	0	0	1	11669	987	35	2		2	PDGFRB	5	149499609	Silent	SNP	G	TCGA-B2-4098-01A-02D-1386-10	34321847	149499609	31415651	16	13863											
KIF4B	285643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	154394675	154394675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	154394675	G	T	154394675	3	4	216	1	0	0	0	0	1	0	0	0	8311	1000	35	4	1258	4	KIF4B	5	154394675	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-02D-1386-10	4895066	154394675	26520585	17	13864											
GCNT2	2651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	10529526	10529526	+	Silent	SNP	C	C	T	rs151060330	alternate_allele	TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	10529526	C	T	10529526	2	4	216	1	0	0	0	0	0	0	0	1	6308	680	24	2		2	GCNT2	6	10529526	Silent	SNP	C	TCGA-B2-4098-01A-02D-1386-10		10529526	160585541	18	13865											
XPO5	57510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43491607	43491607	+	Silent	SNP	C	C	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	43491607	C	T	43491607	2	4	216	1	0	0	0	0	0	0	0	1	17459	837	29	2		2	XPO5	6	43491607	Silent	SNP	C	TCGA-B2-4098-01A-02D-1386-10	32962081	43491607	127623460	19	13866											
ZNF804B	219578	hgsc.bcm.edu;ucsc.edu	37	7	88962701	88962702	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	88962702	-	A	88962701	7	5	216	1	0	1	1	0	0	0	0	0	18183	489	17	0	419	0	ZNF804B	7	88962701	Frame_Shift_Ins	INS	-	TCGA-B2-4098-01A-02D-1386-10		88962701	70175962	20	13867											
CNOT4	4850	hgsc.bcm.edu;ucsc.edu	37	7	135098321	135098322	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	TT	135098322	-	TT	135098321	7	5	216	1	0	1	1	0	0	0	0	0	3623	912	32	0	1445	0	CNOT4	7	135098321	Frame_Shift_Ins	INS	-	TCGA-B2-4098-01A-02D-1386-10	46135620	135098321	24040342	21	13868											
SYBU	55638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110598354	110598354	+	Silent	SNP	G	G	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	110598354	G	A	110598354	2	1	216	1	0	0	0	0	0	0	0	1	15439	1306	46	2		2	SYBU	8	110598354	Silent	SNP	G	TCGA-B2-4098-01A-02D-1386-10		110598354	35765668	22	13869											
OC90	729330	hgsc.bcm.edu	37	8	133036893	133036894	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	G	133036894	-	G	133036893	7	5	216	1	0	1	1	0	0	0	0	0	10821	1567	55	0	168	0	OC90	8	133036893	Frame_Shift_Ins	INS	-	TCGA-B2-4098-01A-02D-1386-10	22438539	133036893	13327129	23	13870											
NPR2	4882	broad.mit.edu	37	9	35792438	35792438	+	Silent	SNP	A	G	G	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	G	35792438	G	G	35792438	2	3	216	1	0	0	0	0	0	0	0	1	10602	175	7	3		3	NPR2	9	35792438	Silent	SNP	A	TCGA-B2-4098-01A-02D-1386-10		35792438	105420993	24	13871											
CAMSAP1	157922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	138713195	138713195	+	Silent	SNP	C	C	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	138713195	C	T	138713195	2	4	216	1	0	0	0	0	0	0	0	1	2613	639	23	1		1	CAMSAP1	9	138713195	Silent	SNP	C	TCGA-B2-4098-01A-02D-1386-10	102920757	138713195	2500236	25	13872											
CSTF3	1479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	33108666	33108666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	33108666	C	T	33108666	3	4	216	1	0	0	0	0	1	0	0	0	3988	797	28	2	506	2	CSTF3	11	33108666	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-02D-1386-10		33108666	101897850	26	13873											
DGKZ	8525	broad.mit.edu;ucsc.edu	37	11	46401080	46401080	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	46401080	A	A	46401080	3	1	216	1	0	0	0	0	1	0	0	0	4476	1145	40	1	3764	1	DGKZ	11	46401080	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-02D-1386-10	13292414	46401080	88605436	27	13874											
TSGA10IP	254187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65715544	65715544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	65715544	C	T	65715544	3	4	216	1	0	0	0	0	1	0	0	0	16630	739	26	2	1090	2	TSGA10IP	11	65715544	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-02D-1386-10	19314464	65715544	69290972	28	13875											
NCKAP5L	57701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	50190216	50190216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	C	50190216	A	C	50190216	3	2	216	1	0	0	0	0	1	0	0	0	10231	304	11	5	2601	5	NCKAP5L	12	50190216	Missense_Mutation	SNP	A	TCGA-B2-4098-01A-02D-1386-10		50190216	83661679	29	13876											
KIAA0748	0	broad.mit.edu	37	12	55357546	55357546	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	G	55357546	G	G	55357546	3	3	216	1	0	0	0	0	1	0	0	0	8197	1667	58	5	942	5	KIAA0748	12	55357546	Missense_Mutation	SNP	T	TCGA-B2-4098-01A-02D-1386-10	5167330	55357546	78494349	30	13877											
CIT	11113	hgsc.bcm.edu;ucsc.edu	37	12	120241113	120241113	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	-	120241113	A	-	120241113	7	5	216	1	0	1	0	1	0	0	0	0	3440	246	9	0	5043	0	CIT	12	120241113	Frame_Shift_Del	DEL	A	TCGA-B2-4098-01A-02D-1386-10	64883567	120241113	13610782	31	13878											
NBEA	26960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	35770236	35770236	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	-	35770236	T	-	35770236	7	5	216	1	0	1	0	1	0	0	0	0	10194	1432	50	0	5285	0	NBEA	13	35770236	Frame_Shift_Del	DEL	T	TCGA-B2-4098-01A-02D-1386-10		35770236	79399642	32	13879											
DUOX1	53905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45428753	45428753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	G	45428753	A	G	45428753	3	3	216	1	0	0	0	0	1	0	0	0	4802	217	8	3	982	3	DUOX1	15	45428753	Missense_Mutation	SNP	A	TCGA-B2-4098-01A-02D-1386-10		45428753	57102639	33	13880											
FGF7	2252	hgsc.bcm.edu	37	15	49776509	49776509	+	Silent	SNP	A	A	G	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	G	49776509	A	G	49776509	2	3	216	1	0	0	0	0	0	0	0	1	5864	69	3	3		3	FGF7	15	49776509	Silent	SNP	A	TCGA-B2-4098-01A-02D-1386-10	4347756	49776509	52754883	34	13881	178	2									
FGF7	2252	hgsc.bcm.edu	37	15	49776514	49776514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	49776514	G	A	49776514	3	1	216	1	0	0	0	0	1	0	0	0	5864	1319	46	2	408	2	FGF7	15	49776514	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-02D-1386-10	5	49776514	52754878	35	13882	178	2									
HEXA	3073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	72642868	72642868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	C	72642868	A	C	72642868	3	2	216	1	0	0	0	0	1	0	0	0	7080	188	7	5	825	5	HEXA	15	72642868	Missense_Mutation	SNP	A	TCGA-B2-4098-01A-02D-1386-10	22866354	72642868	29888524	36	13883											
WDR73	84942	hgsc.bcm.edu;ucsc.edu	37	15	85186743	85186743	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	-	85186743	A	-	85186743	7	5	216	1	0	1	0	1	0	0	0	0	17335	291	11	0	45	0	WDR73	15	85186743	Frame_Shift_Del	DEL	A	TCGA-B2-4098-01A-02D-1386-10	12543875	85186743	17344649	37	13884											
ITGAL	3683	broad.mit.edu;hgsc.bcm.edu	37	16	30507854	30507854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	30507854	C	A	30507854	3	1	216	1	0	0	0	0	1	0	0	0	7893	797	28	4	1857	4	ITGAL	16	30507854	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-02D-1386-10		30507854	59846899	38	13885											
ALOXE3	59344	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8020117	8020117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	8020117	G	A	8020117	3	1	216	1	0	0	0	0	1	0	0	0	542	1261	44	2	1862	2	ALOXE3	17	8020117	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-02D-1386-10		8020117	73175093	39	13886											
KRTAP4-4	84616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39316569	39316569	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	39316569	G	T	39316569	4	4	216	1	0	0	0	0	0	1	0	0	8560	1024	36	4	129	4	KRTAP4-4	17	39316569	Nonsense_Mutation	SNP	G	TCGA-B2-4098-01A-02D-1386-10	31296452	39316569	41878641	40	13887											
KRT17	3872	hgsc.bcm.edu	37	17	39780391	39780392	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	C	39780392	-	C	39780391	7	5	216	1	0	1	1	0	0	0	0	0	8461	1203	42	0	959	0	KRT17	17	39780391	Frame_Shift_Ins	INS	-	TCGA-B2-4098-01A-02D-1386-10	463822	39780391	41414819	41	13888											
MTMR4	9110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56589825	56589825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	56589825	C	T	56589825	3	4	216	1	0	0	0	0	1	0	0	0	9953	623	22	2	3515	2	MTMR4	17	56589825	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-02D-1386-10	16809434	56589825	24605385	42	13889											
TTYH2	94015	broad.mit.edu	37	17	72209750	72209750	+	Silent	SNP	C	T	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	72209750	T	T	72209750	2	4	216	1	0	0	0	0	0	0	0	1	16752	489	17	2		2	TTYH2	17	72209750	Silent	SNP	C	TCGA-B2-4098-01A-02D-1386-10	15619925	72209750	8985460	43	13890											
DNAH17	8632	broad.mit.edu	37	17	76451801	76451801	+	Silent	SNP	G	A	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	76451801	A	A	76451801	2	1	216	1	0	0	0	0	0	0	0	1	4603	1140	40	1		1	DNAH17	17	76451801	Silent	SNP	G	TCGA-B2-4098-01A-02D-1386-10	4242051	76451801	4743409	44	13891											
ARHGAP28	79822	broad.mit.edu;hgsc.bcm.edu	37	18	6873513	6873513	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	G	6873513	T	G	6873513	3	3	216	1	0	0	0	0	1	0	0	0	877	1609	56	5	605	5	ARHGAP28	18	6873513	Missense_Mutation	SNP	T	TCGA-B2-4098-01A-02D-1386-10		6873513	71203735	45	13892											
PVRL2	5819	hgsc.bcm.edu	37	19	45391485	45391486	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	C	45391486	-	C	45391485	7	5	216	1	0	1	1	0	0	0	0	0	12853	275	10	0	1902	0	PVRL2	19	45391485	Frame_Shift_Ins	INS	-	TCGA-B2-4098-01A-02D-1386-10		45391485	13737498	46	13893											
RTN2	6253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45996518	45996518	+	Silent	SNP	G	G	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	45996518	G	A	45996518	2	1	216	1	0	0	0	0	0	0	0	1	13739	1219	43	2		2	RTN2	19	45996518	Silent	SNP	G	TCGA-B2-4098-01A-02D-1386-10	605033	45996518	13132465	47	13894											
GGT1	2678	broad.mit.edu	37	22	25007058	25007058	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	25007058	T	T	25007058	4	4	216	1	0	0	0	0	0	1	0	0	6368	247	9	5	12	5	GGT1	22	25007058	Nonsense_Mutation	SNP	A	TCGA-B2-4098-01A-02D-1386-10		25007058	26297508	48	13895											
C22orf42	150297	broad.mit.edu;hgsc.bcm.edu	37	22	32555121	32555121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	A	32555121	G	A	32555121	3	1	216	1	0	0	0	0	1	0	0	0	2151	1348	47	2	709	2	C22orf42	22	32555121	Missense_Mutation	SNP	G	TCGA-B2-4098-01A-02D-1386-10	7548063	32555121	18749445	49	13896											
APOBEC3B	9582	broad.mit.edu	37	22	39387382	39387382	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	39387382	T	T	39387382	3	4	216	1	0	0	0	0	1	0	0	0	790	768	27	1	791	1	APOBEC3B	22	39387382	Missense_Mutation	SNP	C	TCGA-B2-4098-01A-02D-1386-10	6832261	39387382	11917184	50	13897											
POLDIP3	84271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42992339	42992339	+	Silent	SNP	G	G	T	novel		TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	42992339	G	T	42992339	2	4	216	1	0	0	0	0	0	0	0	1	12202	1335	47	4		4	POLDIP3	22	42992339	Silent	SNP	G	TCGA-B2-4098-01A-02D-1386-10	3604957	42992339	8312227	51	13898											
ODZ1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	123839011	123839011	+	Silent	SNP	C	C	T	rs191615019	by1000genomes	TCGA-B2-4098-01A-02D-1386-10	TCGA-B2-4098-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2ae3c4d9-cbe7-42e6-a60c-67e0fc098d40	4263df5d-4a99-40dc-84ac-e47c55001df5	T	123839011	C	T	123839011	2	4	216	1	0	0	0	0	0	0	0	1	10841	755	27	1		1	ODZ1	23	123839011	Silent	SNP	C	TCGA-B2-4098-01A-02D-1386-10		123839011	31431549	52	13899											
FAM131C	348487	broad.mit.edu	37	1	16361875	16361875	+	Missense_Mutation	SNP	A	G	G	rs79266383		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	G	16361875	G	G	16361875	3	3	217	1	0	0	0	0	1	0	0	0	5445	319	11	3		3	FAM131C	1	16361875	Missense_Mutation	SNP	A	TCGA-B2-4099-01A-02D-1251-10		16361875	232888746	1	13900											
CDC42	998	broad.mit.edu;hgsc.bcm.edu	37	1	22417987	22417987	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	22417987	A	T	22417987	3	4	217	1	0	0	0	0	1	0	0	0	3073	304	11	5	665	5	CDC42	1	22417987	Missense_Mutation	SNP	A	TCGA-B2-4099-01A-02D-1251-10	6056112	22417987	226832634	2	13901											
KDM4A	9682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44128741	44128741	+	Silent	SNP	T	T	C	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	C	44128741	T	C	44128741	2	2	217	1	0	0	0	0	0	0	0	1	8135	1809	63	3		3	KDM4A	1	44128741	Silent	SNP	T	TCGA-B2-4099-01A-02D-1251-10	21710754	44128741	205121880	3	13902											
TMEM69	51249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46156752	46156752	+	Silent	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	46156752	C	T	46156752	2	4	217	1	0	0	0	0	0	0	0	1	16210	825	29	2		2	TMEM69	1	46156752	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10	2028011	46156752	203093869	4	13903											
RYR2	6262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	237895427	237895427	+	Silent	SNP	C	C	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	237895427	C	A	237895427	2	1	217	1	0	0	0	0	0	0	0	1	13782	875	31	4		4	RYR2	1	237895427	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10	191738675	237895427	11355194	5	13904											
CNST	163882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	246810555	246810555	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	-	246810555	T	-	246810555	7	5	217	1	0	1	0	1	0	0	0	0	3636	1609	56	0	1082	0	CNST	1	246810555	Frame_Shift_Del	DEL	T	TCGA-B2-4099-01A-02D-1251-10	8915128	246810555	2440066	6	13905											
MYT1L	23040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1926721	1926721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	1926721	C	T	1926721	3	4	217	1	0	0	0	0	1	0	0	0	10114	478	17	2	2798	2	MYT1L	2	1926721	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10		1926721	241272652	7	13906											
SLC4A7	9497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	27451006	27451006	+	Silent	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	27451006	C	T	27451006	2	4	217	1	0	0	0	0	0	0	0	1	14671	825	29	2		2	SLC4A7	3	27451006	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10		27451006	170571424	8	13907											
SEMA3F	6405	broad.mit.edu	37	3	50225421	50225421	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	50225421	T	T	50225421	3	4	217	1	0	0	0	0	1	0	0	0	14042	188	7	5	2301	5	SEMA3F	3	50225421	Missense_Mutation	SNP	A	TCGA-B2-4099-01A-02D-1251-10	22774415	50225421	147797009	9	13908											
C3orf45	132228	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	50324620	50324620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	50324620	A	T	50324620	3	4	217	1	0	0	0	0	1	0	0	0	2233	130	5	5	496	5	C3orf45	3	50324620	Missense_Mutation	SNP	A	TCGA-B2-4099-01A-02D-1251-10	99199	50324620	147697810	10	13909											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52620529	52620550	+	Frame_Shift_Del	DEL	ACAGAGGCCACGCGAACCACAG	ACAGAGGCCACGCGAACCACAG	-	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	ACAGAGGCCACGCGAACCACAG	ACAGAGGCCACGCGAACCACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	-	52620550	ACAGAGGCCACGCGAACCACAG	-	52620529	7	5	217	1	0	1	0	1	0	0	0	0	11498	391	14	0	1645	0	PBRM1	3	52620529	Frame_Shift_Del	DEL	ACAGAGGCCACGCGAACCACAG	TCGA-B2-4099-01A-02D-1251-10	2295909	52620529	145401901	11	13910											
OR5H1	26341	hgsc.bcm.edu;ucsc.edu	37	3	97852455	97852456	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	97852456	-	A	97852455	7	5	217	1	0	1	1	0	0	0	0	0	11166	1764	61	0	916	0	OR5H1	3	97852455	Frame_Shift_Ins	INS	-	TCGA-B2-4099-01A-02D-1251-10	45231926	97852455	100169975	12	13911											
ALG3	10195	broad.mit.edu	37	3	183961713	183961713	+	Silent	SNP	G	T	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	183961713	T	T	183961713	2	4	217	1	0	0	0	0	0	0	0	1	520	1190	42	4		4	ALG3	3	183961713	Silent	SNP	G	TCGA-B2-4099-01A-02D-1251-10	86109258	183961713	14060717	13	13912											
RUFY3	22902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71648807	71648807	+	Splice_Site	SNP	G	G	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	71648807	G	T	71648807	5	4	217	1	0	0	0	0	0	0	1	0	13753	985	34	4	1290	4	RUFY3	4	71648807	Splice_Site	SNP	G	TCGA-B2-4099-01A-02D-1251-10		71648807	119505469	14	13913											
PTPN13	5783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87696460	87696460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	87696460	C	T	87696460	3	4	217	1	0	0	0	0	1	0	0	0	12793	652	23	1	5790	1	PTPN13	4	87696460	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10	16047653	87696460	103457816	15	13914											
MAD2L1	4085	broad.mit.edu;hgsc.bcm.edu	37	4	120981284	120981284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	120981284	C	T	120981284	3	4	217	1	0	0	0	0	1	0	0	0	9155	478	17	2	14	2	MAD2L1	4	120981284	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10	33284824	120981284	70172992	16	13915											
TMEM184C	55751	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	148545115	148545115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	C	148545115	G	C	148545115	3	2	217	1	0	0	0	0	1	0	0	0	16118	1014	35	4	260	4	TMEM184C	4	148545115	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	27563831	148545115	42609161	17	13916											
ADAM29	11086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	175898846	175898846	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	175898846	C	T	175898846	4	4	217	1	0	0	0	0	0	1	0	0	247	876	31	1	2172	1	ADAM29	4	175898846	Nonsense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10	27353731	175898846	15255430	18	13917											
CDH18	1016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	19520813	19520813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	19520813	C	A	19520813	3	1	217	1	0	0	0	0	1	0	0	0	3105	710	25	4	923	4	CDH18	5	19520813	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10		19520813	161394447	19	13918											
FNIP1	96459	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131008580	131008580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	G	131008580	T	G	131008580	3	3	217	1	0	0	0	0	1	0	0	0	5982	1519	53	5	1963	5	FNIP1	5	131008580	Missense_Mutation	SNP	T	TCGA-B2-4099-01A-02D-1251-10	111487767	131008580	49906680	20	13919											
TGFBI	7045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	135379760	135379760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	135379760	G	A	135379760	3	1	217	1	0	0	0	0	1	0	0	0	15832	1059	37	1	257	1	TGFBI	5	135379760	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	4371180	135379760	45535500	21	13920											
PCDHB6	56130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140532190	140532190	+	Silent	SNP	C	C	A	rs146937630	alternate_allele	TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	140532190	C	A	140532190	2	1	217	1	0	0	0	0	0	0	0	1	11553	610	22	4		4	PCDHB6	5	140532190	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10	5152430	140532190	40383070	22	13921											
NSD1	64324	broad.mit.edu;hgsc.bcm.edu	37	5	176665505	176665505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	G	176665505	C	G	176665505	3	3	217	1	0	0	0	0	1	0	0	0	10676	739	26	4	4211	4	NSD1	5	176665505	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10	36133315	176665505	4249755	23	13922											
ZUFSP	221302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	116977892	116977892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	116977892	C	T	116977892	3	4	217	1	0	0	0	0	1	0	0	0	18258	864	30	2	844	2	ZUFSP	6	116977892	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10		116977892	54137175	24	13923											
HOXA10	3206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	27211532	27211533	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	-	27211533	AG	-	27211532	7	5	217	1	0	1	0	1	0	0	0	0	7296	72	3	0	17	0	HOXA10	7	27211532	Frame_Shift_Del	DEL	AG	TCGA-B2-4099-01A-02D-1251-10		27211532	131927131	25	13924											
WBSCR28	135886	broad.mit.edu	37	7	73280191	73280191	+	Silent	SNP	T	C	C	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	C	73280191	C	C	73280191	2	2	217	1	0	0	0	0	0	0	0	1	17279	1538	54	3		3	WBSCR28	7	73280191	Silent	SNP	T	TCGA-B2-4099-01A-02D-1251-10	46068659	73280191	85858472	26	13925											
CUL1	8454	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	148485659	148485659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	148485659	G	A	148485659	3	1	217	1	0	0	0	0	1	0	0	0	4056	1232	43	2	1540	2	CUL1	7	148485659	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	75205468	148485659	10653004	27	13926											
PIGO	84720	broad.mit.edu	37	9	35095479	35095479	+	Silent	SNP	G	A	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	35095479	A	A	35095479	2	1	217	1	0	0	0	0	0	0	0	1	11901	1165	41	2		2	PIGO	9	35095479	Silent	SNP	G	TCGA-B2-4099-01A-02D-1251-10		35095479	106117952	28	13927											
SLC16A9	220963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61414026	61414026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	61414026	A	T	61414026	3	4	217	1	0	0	0	0	1	0	0	0	14428	72	3	5	779	5	SLC16A9	10	61414026	Missense_Mutation	SNP	A	TCGA-B2-4099-01A-02D-1251-10		61414026	74120721	29	13928											
NPM3	10360	hgsc.bcm.edu;ucsc.edu	37	10	103542318	103542319	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	103542319	-	A	103542318	7	5	217	1	0	1	1	0	0	0	0	0	10596	478	17	0	307	0	NPM3	10	103542318	Frame_Shift_Ins	INS	-	TCGA-B2-4099-01A-02D-1251-10	42128292	103542318	31992429	30	13929											
SLK	9748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	105752775	105752775	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	-	105752775	A	-	105752775	7	5	217	1	0	1	0	1	0	0	0	0	14761	130	5	0	412	0	SLK	10	105752775	Frame_Shift_Del	DEL	A	TCGA-B2-4099-01A-02D-1251-10	2210457	105752775	29781972	31	13930											
RAB11FIP2	22841	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	119805451	119805451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	119805451	C	T	119805451	3	4	217	1	0	0	0	0	1	0	0	0	12907	855	30	2	1334	2	RAB11FIP2	10	119805451	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10	14052676	119805451	15729296	32	13931											
OR56A4	120793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6024124	6024124	+	Silent	SNP	G	G	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	6024124	G	A	6024124	2	1	217	1	0	0	0	0	0	0	0	1	11142	1219	43	2		2	OR56A4	11	6024124	Silent	SNP	G	TCGA-B2-4099-01A-02D-1251-10		6024124	128982392	33	13932											
DNHD1	144132	broad.mit.edu;hgsc.bcm.edu	37	11	6585252	6585252	+	Silent	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	6585252	C	T	6585252	2	4	217	1	0	0	0	0	0	0	0	1	4670	776	27	1		1	DNHD1	11	6585252	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10	561128	6585252	128421264	34	13933											
MICALCL	84953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	12376331	12376331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	12376331	G	T	12376331	3	4	217	1	0	0	0	0	1	0	0	0	9579	1246	43	4	1856	4	MICALCL	11	12376331	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	5791079	12376331	122630185	35	13934											
STAB2	55576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104107496	104107496	+	Missense_Mutation	SNP	G	G	A	rs141685549	by1000genomes	TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	104107496	G	A	104107496	3	1	217	1	0	0	0	0	1	0	0	0	15250	1058	37	1	4653	1	STAB2	12	104107496	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10		104107496	29744399	36	13935											
SYNE2	23224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64683102	64683102	+	Silent	SNP	C	C	G	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	G	64683102	C	G	64683102	2	3	217	1	0	0	0	0	0	0	0	1	15458	668	24	4		4	SYNE2	14	64683102	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10		64683102	42666438	37	13936											
SYNJ2BP	55333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	70839819	70839819	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	70839819	A	T	70839819	3	4	217	1	0	0	0	0	1	0	0	0	15466	330	12	5	114	5	SYNJ2BP	14	70839819	Missense_Mutation	SNP	A	TCGA-B2-4099-01A-02D-1251-10	6156717	70839819	36509721	38	13937											
PTPN21	11099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	88983531	88983531	+	Silent	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	88983531	C	T	88983531	2	4	217	1	0	0	0	0	0	0	0	1	12799	912	32	2		2	PTPN21	14	88983531	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10	18143712	88983531	18366009	39	13938											
KIAA0556	23247	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	27689189	27689189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	27689189	G	T	27689189	3	4	217	1	0	0	0	0	1	0	0	0	8190	942	33	4	706	4	KIAA0556	16	27689189	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10		27689189	62665564	40	13939											
KIAA0895L	653319	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67214015	67214015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	67214015	C	T	67214015	3	4	217	1	0	0	0	0	1	0	0	0	8205	835	29	2	940	2	KIAA0895L	16	67214015	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10	39524826	67214015	23140738	41	13940											
ELMO3	79767	broad.mit.edu;hgsc.bcm.edu	37	16	67235520	67235520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	67235520	G	A	67235520	3	1	217	1	0	0	0	0	1	0	0	0	5069	1116	39	1	1090	1	ELMO3	16	67235520	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	21505	67235520	23119233	42	13941											
FUK	197258	broad.mit.edu	37	16	70508127	70508128	+	In_Frame_Ins	INS	-	CCA	CCA	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	CCA	70508128	CCA	CCA	70508127	7	5	217	1	0	1	1	0	0	0	0	0	6103	759	27	0	1931	0	FUK	16	70508127	In_Frame_Ins	INS	-	TCGA-B2-4099-01A-02D-1251-10	3272607	70508127	19846626	43	13942											
SMYD4	114826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1703754	1703754	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	-	1703754	A	-	1703754	7	5	217	1	0	1	0	1	0	0	0	0	14837	217	8	0	1508	0	SMYD4	17	1703754	Frame_Shift_Del	DEL	A	TCGA-B2-4099-01A-02D-1251-10		1703754	79491456	44	13943											
MYH8	4626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10299727	10299727	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	10299727	G	A	10299727	4	1	217	1	0	0	0	0	0	1	0	0	10048	1328	46	2	1272	2	MYH8	17	10299727	Nonsense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	8595973	10299727	70895483	45	13944											
HEATR6	63897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	58137396	58137396	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	C	58137396	G	C	58137396	3	2	217	1	0	0	0	0	1	0	0	0	7040	942	33	4	2111	4	HEATR6	17	58137396	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	47837669	58137396	23057814	46	13945											
KIF19	124602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72345372	72345372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	72345372	G	T	72345372	3	4	217	1	0	0	0	0	1	0	0	0	8289	971	34	4	1135	4	KIF19	17	72345372	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	14207976	72345372	8849838	47	13946											
ACSBG2	81616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6183057	6183057	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	C	6183057	A	C	6183057	3	2	217	1	0	0	0	0	1	0	0	0	174	362	13	5	1130	5	ACSBG2	19	6183057	Missense_Mutation	SNP	A	TCGA-B2-4099-01A-02D-1251-10		6183057	52945926	48	13947											
DNM2	1785	broad.mit.edu	37	19	10935788	10935788	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	G	10935788	G	G	10935788	3	3	217	1	0	0	0	0	1	0	0	0	4674	304	11	3	2162	3	DNM2	19	10935788	Missense_Mutation	SNP	A	TCGA-B2-4099-01A-02D-1251-10	4752731	10935788	48193195	49	13948											
ZNF564	163050	hgsc.bcm.edu	37	19	12637738	12637739	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	AA	12637739	-	AA	12637738	7	5	217	1	0	1	1	0	0	0	0	0	18007	478	17	0	481	0	ZNF564	19	12637738	Frame_Shift_Ins	INS	-	TCGA-B2-4099-01A-02D-1251-10	1701950	12637738	46491245	50	13949											
WDR62	284403	hgsc.bcm.edu;ucsc.edu	37	19	36593730	36593730	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	-	36593730	C	-	36593730	7	5	217	1	0	1	0	1	0	0	0	0	17325	900	32	0	3418	0	WDR62	19	36593730	Frame_Shift_Del	DEL	C	TCGA-B2-4099-01A-02D-1251-10	23955992	36593730	22535253	51	13950	179	2									
WDR62	284403	hgsc.bcm.edu;ucsc.edu	37	19	36593732	36593733	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	-	36593733	CA	-	36593732	7	5	217	1	0	1	0	1	0	0	0	0	17325	838	29	0	3420	0	WDR62	19	36593732	Frame_Shift_Del	DEL	CA	TCGA-B2-4099-01A-02D-1251-10	2	36593732	22535251	52	13951	179	2									
HKR1	284459	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37854193	37854193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	37854193	G	A	37854193	3	1	217	1	0	0	0	0	1	0	0	0	7201	1377	48	2	1510	2	HKR1	19	37854193	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	1260461	37854193	21274790	53	13952											
ZNF227	7770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44740521	44740521	+	Silent	SNP	T	T	C	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	C	44740521	T	C	44740521	2	2	217	1	0	0	0	0	0	0	0	1	17793	1654	58	3		3	ZNF227	19	44740521	Silent	SNP	T	TCGA-B2-4099-01A-02D-1251-10	6886328	44740521	14388462	54	13953											
GLTSCR2	29997	broad.mit.edu	37	19	48258011	48258011	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	48258011	A	A	48258011	3	1	217	1	0	0	0	0	1	0	0	0	6482	1174	41	2	946	2	GLTSCR2	19	48258011	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	3517490	48258011	10870972	55	13954											
KLK14	43847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51585845	51585845	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	G	51585845	T	G	51585845	3	3	217	1	0	0	0	0	1	0	0	0	8409	1606	56	5	748	5	KLK14	19	51585845	Missense_Mutation	SNP	T	TCGA-B2-4099-01A-02D-1251-10	3327834	51585845	7543138	56	13955											
REM1	28954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30064350	30064350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	G	30064350	C	G	30064350	3	3	217	1	0	0	0	0	1	0	0	0	13235	709	25	4	104	4	REM1	20	30064350	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10		30064350	32961170	57	13956											
RFPL2	10739	broad.mit.edu;hgsc.bcm.edu	37	22	32587083	32587083	+	Silent	SNP	G	G	C	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	C	32587083	G	C	32587083	2	2	217	1	0	0	0	0	0	0	0	1	13267	1335	47	4		4	RFPL2	22	32587083	Silent	SNP	G	TCGA-B2-4099-01A-02D-1251-10		32587083	18717483	58	13957											
NHS	4810	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	17746842	17746842	+	Silent	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	17746842	C	T	17746842	2	4	217	1	0	0	0	0	0	0	0	1	10418	883	31	1		1	NHS	23	17746842	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10		17746842	137523718	59	13958											
ARX	170302	broad.mit.edu	37	X	25022841	25022841	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	25022841	A	A	25022841	3	1	217	1	0	0	0	0	1	0	0	0	1004	796	28	4	57	4	ARX	23	25022841	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10	7275999	25022841	130247719	60	13959											
DMD	1756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	31196785	31196785	+	Silent	SNP	C	C	A	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	31196785	C	A	31196785	2	1	217	1	0	0	0	0	0	0	0	1	4582	550	19	4		4	DMD	23	31196785	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10	6173944	31196785	124073775	61	13960											
SLC35A2	7355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48762340	48762340	+	Silent	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	48762340	C	T	48762340	2	4	217	1	0	0	0	0	0	0	0	1	14584	726	26	2		2	SLC35A2	23	48762340	Silent	SNP	C	TCGA-B2-4099-01A-02D-1251-10	17565555	48762340	106508220	62	13961											
VSIG4	11326	broad.mit.edu;ucsc.edu	37	X	65252420	65252420	+	Missense_Mutation	SNP	G	A	A	rs139911916	alternate_allele	TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	A	65252420	A	A	65252420	3	1	217	1	0	0	0	0	1	0	0	0	17237	1261	44	2	643	2	VSIG4	23	65252420	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1251-10	16490080	65252420	90018140	63	13962											
DCAF12L1	139170	broad.mit.edu;hgsc.bcm.edu	37	X	125685459	125685459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1251-10	TCGA-B2-4099-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ce82bf89-dc70-44a3-b708-8baf21fbcc47	ef7262e7-c3e5-4d51-b410-aafd62940610	T	125685459	C	T	125685459	3	4	217	1	0	0	0	0	1	0	0	0	4266	652	23	1	262	1	DCAF12L1	23	125685459	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1251-10	60433039	125685459	29585101	64	13963											
LRRC7	57554	broad.mit.edu	37	1	70502282	70502282	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	C	70502282	C	C	70502282	3	2	218	1	0	0	0	0	1	0	0	0	9027	1029	36	4	2219	4	LRRC7	1	70502282	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1458-08		70502282	178748339	1	13964											
LASS2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150939585	150939585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	C	150939585	T	C	150939585	3	2	218	1	0	0	0	0	1	0	0	0	8646	1464	51	3	452	3	LASS2	1	150939585	Missense_Mutation	SNP	T	TCGA-B2-4099-01A-02D-1458-08	80437303	150939585	98311036	2	13965											
ZNF238	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	244218338	244218338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	T	244218338	G	T	244218338	3	4	218	1	0	0	0	0	1	0	0	0	17802	1319	46	4	1268	4	ZNF238	1	244218338	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1458-08	93278753	244218338	5032283	3	13966											
DNAH7	56171	broad.mit.edu;hgsc.bcm.edu	37	2	196723250	196723250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	T	196723250	G	T	196723250	3	4	218	1	0	0	0	0	1	0	0	0	4608	1203	42	4	4151	4	DNAH7	2	196723250	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1458-08		196723250	46476123	4	13967											
KIF1A	547	broad.mit.edu	37	2	241660401	241660401	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	A	241660401	A	A	241660401	3	1	218	1	0	0	0	0	1	0	0	0	8290	507	18	4	597	4	KIF1A	2	241660401	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1458-08	44937151	241660401	1538972	5	13968											
GLYCTK	132158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52324497	52324497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	A	52324497	G	A	52324497	3	1	218	1	0	0	0	0	1	0	0	0	6489	1000	35	2	141	2	GLYCTK	3	52324497	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1458-08		52324497	145697933	6	13969											
PF4	5196	broad.mit.edu	37	4	74847209	74847209	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	A	74847209	A	A	74847209	3	1	218	1	0	0	0	0	1	0	0	0	11759	1174	41	2	170	2	PF4	4	74847209	Missense_Mutation	SNP	G	TCGA-B2-4099-01A-02D-1458-08		74847209	116307067	7	13970											
HIST1H3I	8354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27839911	27839911	+	Silent	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	T	27839911	C	T	27839911	2	4	218	1	0	0	0	0	0	0	0	1	7170	697	25	2		2	HIST1H3I	6	27839911	Silent	SNP	C	TCGA-B2-4099-01A-02D-1458-08		27839911	143275156	8	13971											
CLDN3	1365	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	73183930	73183930	+	Silent	SNP	C	C	G	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	G	73183930	C	G	73183930	2	3	218	1	0	0	0	0	0	0	0	1	3488	581	21	4		4	CLDN3	7	73183930	Silent	SNP	C	TCGA-B2-4099-01A-02D-1458-08		73183930	85954733	9	13972											
PYCR1	5831	broad.mit.edu	37	17	79894640	79894640	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	G	79894640	G	G	79894640	3	3	218	1	0	0	0	0	1	0	0	0	12868	680	24	4	1024	4	PYCR1	17	79894640	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1458-08		79894640	1300570	10	13973											
KIAA0802	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	8825236	8825236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	T	8825236	C	T	8825236	3	4	218	1	0	0	0	0	1	0	0	0	8201	623	22	2	3778	2	KIAA0802	18	8825236	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1458-08		8825236	69252012	11	13974											
SBNO2	22904	broad.mit.edu;hgsc.bcm.edu	37	19	1112193	1112193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	C	1112193	T	C	1112193	3	2	218	1	0	0	0	0	1	0	0	0	13876	1551	54	3	1521	3	SBNO2	19	1112193	Missense_Mutation	SNP	T	TCGA-B2-4099-01A-02D-1458-08		1112193	58016790	12	13975											
NOSIP	51070	broad.mit.edu;hgsc.bcm.edu	37	19	50060397	50060397	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-4099-01A-02D-1458-08	TCGA-B2-4099-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01c54f7c-84b9-4f5b-ae44-2ac1f661fd29	54cf60f2-947e-4eb0-b5a7-1e644ca10dba	G	50060397	C	G	50060397	3	3	218	1	0	0	0	0	1	0	0	0	10552	797	28	4	557	4	NOSIP	19	50060397	Missense_Mutation	SNP	C	TCGA-B2-4099-01A-02D-1458-08	48948204	50060397	9068586	13	13976											
C1orf52	148423	hgsc.bcm.edu	37	1	85725117	85725118	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	TA	85725118	-	TA	85725117	7	5	219	1	0	1	1	0	0	0	0	0	2046	1029	36	0	360	0	C1orf52	1	85725117	Frame_Shift_Ins	INS	-	TCGA-B2-4101-01A-02D-1361-10		85725117	163525504	1	13977											
STXBP3	6814	hgsc.bcm.edu	37	1	109338857	109338857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	109338857	A	G	109338857	3	3	219	1	0	0	0	0	1	0	0	0	15366	289	10	3	1166	3	STXBP3	1	109338857	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10	23613740	109338857	139911764	2	13978											
ATP8B2	57198	hgsc.bcm.edu	37	1	154310130	154310130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	154310130	T	G	154310130	3	3	219	1	0	0	0	0	1	0	0	0	1195	1783	62	5	1289	5	ATP8B2	1	154310130	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10	44971273	154310130	94940491	3	13979											
HCN3	57657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155256981	155256981	+	Silent	SNP	A	A	C	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	C	155256981	A	C	155256981	2	2	219	1	0	0	0	0	0	0	0	1	7005	411	15	5		5	HCN3	1	155256981	Silent	SNP	A	TCGA-B2-4101-01A-02D-1361-10	946851	155256981	93993640	4	13980											
USP21	27005	hgsc.bcm.edu	37	1	161134913	161134913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	161134913	G	T	161134913	3	4	219	1	0	0	0	0	1	0	0	0	17065	1212	42	4	1629	4	USP21	1	161134913	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1361-10	5877932	161134913	88115708	5	13981											
EPRS	2058	hgsc.bcm.edu	37	1	220157566	220157566	+	Silent	SNP	A	A	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	220157566	A	G	220157566	2	3	219	1	0	0	0	0	0	0	0	1	5193	117	5	3		3	EPRS	1	220157566	Silent	SNP	A	TCGA-B2-4101-01A-02D-1361-10	59022653	220157566	29093055	6	13982											
PTPN18	26469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	131128788	131128788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	131128788	A	G	131128788	3	3	219	1	0	0	0	0	1	0	0	0	12795	391	14	3	987	3	PTPN18	2	131128788	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10		131128788	112070585	7	13983											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170163814	170163814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	C	170163814	T	C	170163814	3	2	219	1	0	0	0	0	1	0	0	0	8963	1435	50	3	13867	3	LRP2	2	170163814	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10	39035026	170163814	73035559	8	13984											
SGPP2	130367	hgsc.bcm.edu;ucsc.edu	37	2	223423399	223423399	+	Missense_Mutation	SNP	T	T	C	rs188535288	by1000genomes	TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	C	223423399	T	C	223423399	3	2	219	1	0	0	0	0	1	0	0	0	14233	1493	52	3	1000	3	SGPP2	2	223423399	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10	53259585	223423399	19775974	9	13985											
PBRM1	55193	hgsc.bcm.edu	37	3	52692279	52692280	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	-	52692280	AC	-	52692279	7	5	219	1	0	1	0	1	0	0	0	0	11498	43	2	0	4423	0	PBRM1	3	52692279	Frame_Shift_Del	DEL	AC	TCGA-B2-4101-01A-02D-1361-10		52692279	145330151	10	13986											
RFT1	91869	hgsc.bcm.edu	37	3	53153991	53153991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	53153991	G	A	53153991	3	1	219	1	0	0	0	0	1	0	0	0	13270	1377	48	2	1052	2	RFT1	3	53153991	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1361-10	461712	53153991	144868439	11	13987											
COL6A5	256076	hgsc.bcm.edu;ucsc.edu	37	3	130125150	130125150	+	Silent	SNP	T	T	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	130125150	T	G	130125150	2	3	219	1	0	0	0	0	0	0	0	1	3704	1683	59	5		5	COL6A5	3	130125150	Silent	SNP	T	TCGA-B2-4101-01A-02D-1361-10	76971159	130125150	67897280	12	13988											
ZBTB38	253461	hgsc.bcm.edu	37	3	141163615	141163615	+	Silent	SNP	T	T	C	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	C	141163615	T	C	141163615	2	2	219	1	0	0	0	0	0	0	0	1	17551	1799	63	3		3	ZBTB38	3	141163615	Silent	SNP	T	TCGA-B2-4101-01A-02D-1361-10	11038465	141163615	56858815	13	13989											
HES1	3280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	193854202	193854202	+	Silent	SNP	G	G	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	193854202	G	A	193854202	2	1	219	1	0	0	0	0	0	0	0	1	7072	1132	40	1		1	HES1	3	193854202	Silent	SNP	G	TCGA-B2-4101-01A-02D-1361-10	52690587	193854202	4168228	14	13990											
FGFR3	2261	hgsc.bcm.edu	37	4	1808389	1808389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	1808389	C	A	1808389	3	1	219	1	0	0	0	0	1	0	0	0	5874	623	22	4	2360	4	FGFR3	4	1808389	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10		1808389	189345887	15	13991											
ENPEP	2028	hgsc.bcm.edu	37	4	111412268	111412268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	111412268	T	G	111412268	3	3	219	1	0	0	0	0	1	0	0	0	5130	1841	64	5	876	5	ENPEP	4	111412268	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10	109603879	111412268	79742008	16	13992											
KIAA0922	23240	hgsc.bcm.edu;ucsc.edu	37	4	154506662	154506662	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	154506662	A	T	154506662	3	4	219	1	0	0	0	0	1	0	0	0	8208	246	9	5	1260	5	KIAA0922	4	154506662	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10	43094394	154506662	36647614	17	13993											
RNF180	285671	hgsc.bcm.edu	37	5	63509562	63509562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	C	63509562	T	C	63509562	3	2	219	1	0	0	0	0	1	0	0	0	13477	1406	49	3	419	3	RNF180	5	63509562	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10		63509562	117405698	18	13994											
AFAP1L1	134265	hgsc.bcm.edu	37	5	148685872	148685872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	148685872	G	T	148685872	3	4	219	1	0	0	0	0	1	0	0	0	354	1203	42	4	462	4	AFAP1L1	5	148685872	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1361-10	85176310	148685872	32229388	19	13995											
CSF1R	1436	hgsc.bcm.edu	37	5	149453042	149453042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	149453042	T	G	149453042	3	3	219	1	0	0	0	0	1	0	0	0	3934	1783	62	5	2078	5	CSF1R	5	149453042	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10	767170	149453042	31462218	20	13996											
RASGEF1C	255426	hgsc.bcm.edu	37	5	179555487	179555487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	179555487	C	T	179555487	3	4	219	1	0	0	0	0	1	0	0	0	13084	797	28	2	878	2	RASGEF1C	5	179555487	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10	30102445	179555487	1359773	21	13997											
ZBTB22	9278	hgsc.bcm.edu	37	6	33283534	33283534	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	33283534	T	A	33283534	3	1	219	1	0	0	0	0	1	0	0	0	17542	1406	49	5	748	5	ZBTB22	6	33283534	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10		33283534	137831533	22	13998											
FBXL18	80028	hgsc.bcm.edu	37	7	5521537	5521537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	5521537	T	A	5521537	3	1	219	1	0	0	0	0	1	0	0	0	5721	1841	64	5	134	5	FBXL18	7	5521537	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10		5521537	153617126	23	13999											
AIMP2	7965	hgsc.bcm.edu;ucsc.edu	37	7	6063124	6063124	+	Silent	SNP	T	T	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	6063124	T	A	6063124	2	1	219	1	0	0	0	0	0	0	0	1	434	1828	64	5		5	AIMP2	7	6063124	Silent	SNP	T	TCGA-B2-4101-01A-02D-1361-10	541587	6063124	153075539	24	14000											
THSD7A	221981	hgsc.bcm.edu;ucsc.edu	37	7	11500386	11500386	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	11500386	C	G	11500386	3	3	219	1	0	0	0	0	1	0	0	0	15891	912	32	4	2533	4	THSD7A	7	11500386	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10	5437262	11500386	147638277	25	14001											
TAS2R38	5726	hgsc.bcm.edu	37	7	141672558	141672558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	141672558	A	G	141672558	3	3	219	1	0	0	0	0	1	0	0	0	15587	101	4	3	73	3	TAS2R38	7	141672558	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10	130172172	141672558	17466105	26	14002											
EXT1	2131	hgsc.bcm.edu;ucsc.edu	37	8	118819493	118819493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	118819493	A	G	118819493	3	3	219	1	0	0	0	0	1	0	0	0	5325	420	15	3	406	3	EXT1	8	118819493	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10		118819493	27544529	27	14003											
TLN1	7094	hgsc.bcm.edu	37	9	35710663	35710663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	35710663	C	A	35710663	3	1	219	1	0	0	0	0	1	0	0	0	15959	826	29	4	3504	4	TLN1	9	35710663	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10		35710663	105502768	28	14004											
TBC1D13	54662	hgsc.bcm.edu	37	9	131550634	131550634	+	Silent	SNP	C	C	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	131550634	C	T	131550634	2	4	219	1	0	0	0	0	0	0	0	1	15614	842	30	2		2	TBC1D13	9	131550634	Silent	SNP	C	TCGA-B2-4101-01A-02D-1361-10	95839971	131550634	9662797	29	14005											
TBC1D12	23232	hgsc.bcm.edu	37	10	96281773	96281773	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	96281773	T	A	96281773	3	1	219	1	0	0	0	0	1	0	0	0	15613	1841	64	5	1861	5	TBC1D12	10	96281773	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10		96281773	39252974	30	14006											
TACC2	10579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	123810032	123810032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	123810032	C	T	123810032	3	4	219	1	0	0	0	0	1	0	0	0	15514	536	19	1	119	1	TACC2	10	123810032	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10	27528259	123810032	11724715	31	14007											
NUP160	23279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47828640	47828640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	47828640	A	T	47828640	3	4	219	1	0	0	0	0	1	0	0	0	10764	11	1	5	1954	5	NUP160	11	47828640	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10		47828640	87177876	32	14008											
SERPING1	710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57367686	57367686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	C	57367686	T	C	57367686	3	2	219	1	0	0	0	0	1	0	0	0	14129	1551	54	3	392	3	SERPING1	11	57367686	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10	9539046	57367686	77638830	33	14009											
FAU	2197	hgsc.bcm.edu	37	11	64888455	64888455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	C	64888455	T	C	64888455	3	2	219	1	0	0	0	0	1	0	0	0	5701	1763	61	3	135	3	FAU	11	64888455	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10	7520769	64888455	70118061	34	14010											
WNT11	7481	hgsc.bcm.edu	37	11	75898146	75898146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	75898146	C	A	75898146	3	1	219	1	0	0	0	0	1	0	0	0	17396	681	24	4	40	4	WNT11	11	75898146	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10	11009691	75898146	59108370	35	14011											
ZC3H12C	85463	hgsc.bcm.edu	37	11	110035964	110035964	+	Silent	SNP	G	G	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	110035964	G	A	110035964	2	1	219	1	0	0	0	0	0	0	0	1	17575	1248	44	2		2	ZC3H12C	11	110035964	Silent	SNP	G	TCGA-B2-4101-01A-02D-1361-10	34137818	110035964	24970552	36	14012											
CACNA2D4	93589	hgsc.bcm.edu	37	12	1919737	1919737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	1919737	C	A	1919737	3	1	219	1	0	0	0	0	1	0	0	0	2553	623	22	4	827	4	CACNA2D4	12	1919737	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10		1919737	131932158	37	14013											
DYRK4	8798	hgsc.bcm.edu	37	12	4722815	4722815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	4722815	A	G	4722815	3	3	219	1	0	0	0	0	1	0	0	0	4860	131	5	3	1501	3	DYRK4	12	4722815	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10	2803078	4722815	129129080	38	14014											
TGFB1I1	7041	hgsc.bcm.edu	37	16	31487457	31487457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	31487457	T	A	31487457	3	1	219	1	0	0	0	0	1	0	0	0	15829	1841	64	5	869	5	TGFB1I1	16	31487457	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1361-10		31487457	58867296	39	14015											
MYH13	8735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10258026	10258026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	10258026	C	T	10258026	3	4	219	1	0	0	0	0	1	0	0	0	10039	884	31	1	4964	1	MYH13	17	10258026	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10		10258026	70937184	40	14016											
ATAD5	79915	hgsc.bcm.edu	37	17	29220591	29220591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	29220591	G	T	29220591	3	4	219	1	0	0	0	0	1	0	0	0	1076	942	33	4	4802	4	ATAD5	17	29220591	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1361-10	18962565	29220591	51974619	41	14017											
DHX58	79132	hgsc.bcm.edu	37	17	40255755	40255756	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	-	40255756	TT	-	40255755	7	5	219	1	0	1	0	1	0	0	0	0	4516	1725	60	0	423	0	DHX58	17	40255755	Frame_Shift_Del	DEL	TT	TCGA-B2-4101-01A-02D-1361-10	11035164	40255755	40939455	42	14018											
RPL27	6155	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41154776	41154776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	41154776	A	G	41154776	3	3	219	1	0	0	0	0	1	0	0	0	13588	304	11	3	348	3	RPL27	17	41154776	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10	899021	41154776	40040434	43	14019											
C17orf71	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57292295	57292295	+	Missense_Mutation	SNP	C	C	G	rs141411025	bycluster;by1000genomes	TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	57292295	C	G	57292295	3	3	219	1	0	0	0	0	1	0	0	0	1880	623	22	4	2922	4	C17orf71	17	57292295	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10	16137519	57292295	23902915	44	14020											
TTYH2	94015	hgsc.bcm.edu;ucsc.edu	37	17	72239583	72239583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	72239583	A	G	72239583	3	3	219	1	0	0	0	0	1	0	0	0	16752	131	5	3	724	3	TTYH2	17	72239583	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10	14947288	72239583	8955627	45	14021											
QRICH2	84074	hgsc.bcm.edu	37	17	74288892	74288892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	74288892	C	T	74288892	3	4	219	1	0	0	0	0	1	0	0	0	12893	507	18	2	3637	2	QRICH2	17	74288892	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1361-10	2049309	74288892	6906318	46	14022											
THOC4	0	hgsc.bcm.edu	37	17	79846140	79846140	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	A	79846140	G	A	79846140	4	1	219	1	0	0	0	0	0	1	0	0	15879	1357	47	2	45	2	THOC4	17	79846140	Nonsense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1361-10	5557248	79846140	1349070	47	14023											
TGM2	7052	hgsc.bcm.edu	37	20	36784289	36784289	+	Silent	SNP	C	C	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	36784289	C	G	36784289	2	3	219	1	0	0	0	0	0	0	0	1	15842	697	25	4		4	TGM2	20	36784289	Silent	SNP	C	TCGA-B2-4101-01A-02D-1361-10		36784289	26241231	48	14024											
C20orf165	0	hgsc.bcm.edu	37	20	44515205	44515205	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	T	44515205	A	T	44515205	3	4	219	1	0	0	0	0	1	0	0	0	2096	217	8	5	52	5	C20orf165	20	44515205	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1361-10	7730916	44515205	18510315	49	14025											
RANGAP1	5905	hgsc.bcm.edu;ucsc.edu	37	22	41664130	41664130	+	Silent	SNP	T	T	G	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	G	41664130	T	G	41664130	2	3	219	1	0	0	0	0	0	0	0	1	13046	1608	56	5		5	RANGAP1	22	41664130	Silent	SNP	T	TCGA-B2-4101-01A-02D-1361-10		41664130	9640436	50	14026											
ZNF185	7739	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	152085828	152085828	+	Splice_Site	SNP	G	G	C	novel		TCGA-B2-4101-01A-02D-1361-10	TCGA-B2-4101-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8715ce96-749e-42a5-9f05-6275f63c5658	009ee589-0d97-48ed-a544-db41525bc1fb	C	152085828	G	C	152085828	5	2	219	1	0	0	0	0	0	0	1	0	17764	1014	35	4	281	4	ZNF185	23	152085828	Splice_Site	SNP	G	TCGA-B2-4101-01A-02D-1361-10		152085828	3184732	51	14027											
RUNX3	864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	25256117	25256117	+	Silent	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	25256117	C	A	25256117	2	1	220	1	0	0	0	0	0	0	0	1	13762	755	27	4		4	RUNX3	1	25256117	Silent	SNP	C	TCGA-B2-4101-01A-02D-1458-08		25256117	223994504	1	14028											
C1orf52	148423	broad.mit.edu	37	1	85725279	85725279	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	85725279	A	A	85725279	3	1	220	1	0	0	0	0	1	0	0	0	2046	1087	38	1	522	1	C1orf52	1	85725279	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08	60469162	85725279	163525342	2	14029											
PTGS2	5743	broad.mit.edu;hgsc.bcm.edu	37	1	186646956	186646956	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	G	186646956	T	G	186646956	3	3	220	1	0	0	0	0	1	0	0	0	12767	1609	56	5	1374	5	PTGS2	1	186646956	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1458-08	100921677	186646956	62603665	3	14030											
CFH	3075	broad.mit.edu;hgsc.bcm.edu	37	1	196642129	196642129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	196642129	G	T	196642129	3	4	220	1	0	0	0	0	1	0	0	0	3285	942	33	4	86	4	CFH	1	196642129	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08	9995173	196642129	52608492	4	14031	180	2									
CFH	3075	broad.mit.edu;hgsc.bcm.edu	37	1	196642130	196642130	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	196642130	A	T	196642130	3	4	220	1	0	0	0	0	1	0	0	0	3285	243	9	5	87	5	CFH	1	196642130	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1458-08	1	196642130	52608491	5	14032	180	2									
THSD7B	80731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	138414712	138414712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	138414712	G	T	138414712	3	4	220	1	0	0	0	0	1	0	0	0	15892	942	33	4	4359	4	THSD7B	2	138414712	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08		138414712	104784661	6	14033											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47129722	47129722	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	47129722	C	A	47129722	4	1	220	1	0	0	0	0	0	1	0	0	14144	922	32	4	2584	4	SETD2	3	47129722	Nonsense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1458-08		47129722	150892708	7	14034											
WDR52	55779	hgsc.bcm.edu;ucsc.edu	37	3	113098217	113098217	+	Missense_Mutation	SNP	G	G	A	rs58988763	bycluster;byfrequency;by1000genomes	TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	113098217	G	A	113098217	3	1	220	1	0	0	0	0	1	0	0	0	17316	1116	39	1	3421	1	WDR52	3	113098217	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08	65968495	113098217	84924213	8	14035											
TM4SF19	116211	broad.mit.edu;ucsc.edu	37	3	196053866	196053866	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	196053866	T	T	196053866	4	4	220	1	0	0	0	0	0	1	0	0	15980	595	21	2	402	2	TM4SF19	3	196053866	Nonsense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1458-08	82955649	196053866	1968564	9	14036											
MUC7	4589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71346715	71346715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	71346715	C	T	71346715	3	4	220	1	0	0	0	0	1	0	0	0	9988	594	21	2	260	2	MUC7	4	71346715	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1458-08		71346715	119807561	10	14037											
FAM170A	340069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	118970217	118970217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	118970217	C	A	118970217	3	1	220	1	0	0	0	0	1	0	0	0	5493	535	19	4	784	4	FAM170A	5	118970217	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1458-08		118970217	61945043	11	14038											
PCDHA10	56139	broad.mit.edu;ucsc.edu	37	5	140236864	140236864	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	140236864	T	T	140236864	3	4	220	1	0	0	0	0	1	0	0	0	11527	1087	38	4	1233	4	PCDHA10	5	140236864	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08	21266647	140236864	40678396	12	14039											
CDSN	1041	broad.mit.edu;hgsc.bcm.edu	37	6	31088189	31088189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	31088189	G	A	31088189	3	1	220	1	0	0	0	0	1	0	0	0	3181	1059	37	1	1589	1	CDSN	6	31088189	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08		31088189	140026878	13	14040											
TREML4	285852	hgsc.bcm.edu;ucsc.edu	37	6	41196691	41196691	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	-	41196691	G	-	41196691	7	5	220	1	0	1	0	1	0	0	0	0	16486	933	33	0	309	0	TREML4	6	41196691	Frame_Shift_Del	DEL	G	TCGA-B2-4101-01A-02D-1458-08	10108502	41196691	129918376	14	14041											
TAS2R60	338398	broad.mit.edu;ucsc.edu	37	7	143140757	143140757	+	Nonsense_Mutation	SNP	C	G	G	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	G	143140757	G	G	143140757	4	3	220	1	0	0	0	0	0	1	0	0	15597	838	29	4	214	4	TAS2R60	7	143140757	Nonsense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1458-08		143140757	15997906	15	14042											
XKR6	286046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	11058309	11058309	+	Silent	SNP	G	G	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	11058309	G	A	11058309	2	1	220	1	0	0	0	0	0	0	0	1	17447	962	34	2		2	XKR6	8	11058309	Silent	SNP	G	TCGA-B2-4101-01A-02D-1458-08		11058309	135305713	16	14043											
COMMD5	28991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	146076470	146076470	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	146076470	A	T	146076470	3	4	220	1	0	0	0	0	1	0	0	0	3721	188	7	5	424	5	COMMD5	8	146076470	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1458-08	135018161	146076470	287552	17	14044											
RTKN2	219790	broad.mit.edu;hgsc.bcm.edu	37	10	63999439	63999439	+	Silent	SNP	G	G	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	63999439	G	T	63999439	2	4	220	1	0	0	0	0	0	0	0	1	13736	1280	45	4		4	RTKN2	10	63999439	Silent	SNP	G	TCGA-B2-4101-01A-02D-1458-08		63999439	71535308	18	14045	181	2									
RTKN2	219790	broad.mit.edu;hgsc.bcm.edu	37	10	63999440	63999440	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	63999440	A	T	63999440	3	4	220	1	0	0	0	0	1	0	0	0	13736	333	12	5	1406	5	RTKN2	10	63999440	Missense_Mutation	SNP	A	TCGA-B2-4101-01A-02D-1458-08	1	63999440	71535307	19	14046	181	2									
DDX50	79009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70706192	70706192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	C	70706192	T	C	70706192	3	2	220	1	0	0	0	0	1	0	0	0	4370	1783	62	3	2078	3	DDX50	10	70706192	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1458-08	6706752	70706192	64828555	20	14047											
H2AFY2	55506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	71835428	71835428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	C	71835428	G	C	71835428	3	2	220	1	0	0	0	0	1	0	0	0	6937	1029	36	4	16	4	H2AFY2	10	71835428	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08	1129236	71835428	63699319	21	14048											
CDHR5	53841	hgsc.bcm.edu	37	11	618965	618967	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	-	618967	GTT	-	618965	7	5	220	1	0	1	0	1	0	0	0	0	3124	1261	44	0	955	0	CDHR5	11	618965	In_Frame_Del	DEL	GTT	TCGA-B2-4101-01A-02D-1458-08		618965	134387551	22	14049											
QSER1	79832	hgsc.bcm.edu;ucsc.edu	37	11	32954712	32954712	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	-	32954712	A	-	32954712	7	5	220	1	0	1	0	1	0	0	0	0	12895	204	8	0	1527	0	QSER1	11	32954712	Frame_Shift_Del	DEL	A	TCGA-B2-4101-01A-02D-1458-08	32335747	32954712	102051804	23	14050											
TMPRSS13	84000	broad.mit.edu	37	11	117785150	117785150	+	Silent	SNP	G	A	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	117785150	A	A	117785150	2	1	220	1	0	0	0	0	0	0	0	1	16257	1136	40	1		1	TMPRSS13	11	117785150	Silent	SNP	G	TCGA-B2-4101-01A-02D-1458-08	84830438	117785150	17221366	24	14051											
ERBB3	2065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56487323	56487323	+	Missense_Mutation	SNP	G	G	A	rs149951770		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	56487323	G	A	56487323	3	1	220	1	0	0	0	0	1	0	0	0	5210	1087	38	1	1646	1	ERBB3	12	56487323	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08		56487323	77364572	25	14052											
BCL11B	64919	broad.mit.edu;hgsc.bcm.edu	37	14	99640783	99640783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	99640783	G	A	99640783	3	1	220	1	0	0	0	0	1	0	0	0	1364	1145	40	1	298	1	BCL11B	14	99640783	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08		99640783	7708757	26	14053											
ITGA11	22801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	68628034	68628034	+	Splice_Site	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	68628034	C	A	68628034	5	1	220	1	0	0	0	0	0	0	1	0	7881	521	18	4	2216	4	ITGA11	15	68628034	Splice_Site	SNP	C	TCGA-B2-4101-01A-02D-1458-08		68628034	33903358	27	14054											
CES1	1066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	55844874	55844874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	55844874	C	A	55844874	3	1	220	1	0	0	0	0	1	0	0	0	3271	797	28	4	591	4	CES1	16	55844874	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1458-08		55844874	34509879	28	14055											
ZZEF1	23140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3920721	3920721	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	G	3920721	T	G	3920721	3	3	220	1	0	0	0	0	1	0	0	0	18267	1406	49	5	972	5	ZZEF1	17	3920721	Missense_Mutation	SNP	T	TCGA-B2-4101-01A-02D-1458-08		3920721	77274489	29	14056											
KIF1C	10749	hgsc.bcm.edu	37	17	4926877	4926879	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	-	4926879	TCG	-	4926877	7	5	220	1	0	1	0	1	0	0	0	0	8292	1551	54	0	2825	0	KIF1C	17	4926877	In_Frame_Del	DEL	TCG	TCGA-B2-4101-01A-02D-1458-08	1006156	4926877	76268333	30	14057											
ZNF594	84622	hgsc.bcm.edu	37	17	5085789	5085790	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	CC	5085790	-	CC	5085789	7	5	220	1	0	1	1	0	0	0	0	0	18036	391	14	0	664	0	ZNF594	17	5085789	Frame_Shift_Ins	INS	-	TCGA-B2-4101-01A-02D-1458-08	158912	5085789	76109421	31	14058											
ETV4	2118	broad.mit.edu	37	17	41610308	41610308	+	Splice_Site	SNP	C	T	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	41610308	T	T	41610308	5	4	220	1	0	0	0	0	0	0	1	0	5283	811	28	2	933	2	ETV4	17	41610308	Splice_Site	SNP	C	TCGA-B2-4101-01A-02D-1458-08	36524519	41610308	39584902	32	14059											
PHLPP1	23239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	60497298	60497298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	60497298	G	A	60497298	3	1	220	1	0	0	0	0	1	0	0	0	11861	1116	39	1	1613	1	PHLPP1	18	60497298	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08		60497298	17579950	33	14060											
KIAA1543	0	broad.mit.edu;hgsc.bcm.edu	37	19	7677733	7677733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	T	7677733	G	T	7677733	3	4	220	1	0	0	0	0	1	0	0	0	8250	1116	39	4	2485	4	KIAA1543	19	7677733	Missense_Mutation	SNP	G	TCGA-B2-4101-01A-02D-1458-08		7677733	51451250	34	14061											
AKT2	208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40742002	40742002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	G	40742002	C	G	40742002	3	3	220	1	0	0	0	0	1	0	0	0	480	855	30	4	491	4	AKT2	19	40742002	Missense_Mutation	SNP	C	TCGA-B2-4101-01A-02D-1458-08	33064269	40742002	18386981	35	14062											
SEC23B	10483	hgsc.bcm.edu;ucsc.edu	37	20	18492907	18492908	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	-	18492908	TC	-	18492907	7	5	220	1	0	1	0	1	0	0	0	0	14005	1783	62	0	266	0	SEC23B	20	18492907	Frame_Shift_Del	DEL	TC	TCGA-B2-4101-01A-02D-1458-08		18492907	44532613	36	14063											
NCOA6	23054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33328813	33328813	+	Silent	SNP	C	C	A	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	A	33328813	C	A	33328813	2	1	220	1	0	0	0	0	0	0	0	1	10240	523	19	4		4	NCOA6	20	33328813	Silent	SNP	C	TCGA-B2-4101-01A-02D-1458-08	14835906	33328813	29696707	37	14064											
DMD	1756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	32834668	32834668	+	Silent	SNP	A	A	G	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	G	32834668	A	G	32834668	2	3	220	1	0	0	0	0	0	0	0	1	4582	378	14	3		3	DMD	23	32834668	Silent	SNP	A	TCGA-B2-4101-01A-02D-1458-08		32834668	122435892	38	14065											
ZXDA	7789	hgsc.bcm.edu;ucsc.edu	37	X	57935826	57935828	+	In_Frame_Del	DEL	GGT	GGT	-	novel		TCGA-B2-4101-01A-02D-1458-08	TCGA-B2-4101-11A-01D-1458-08	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	09bfe7ac-7667-4a3e-aedd-b621f55fb635	c6972bea-cb24-44f1-a9fc-16a34fef03c9	-	57935828	GGT	-	57935826	7	5	220	1	0	1	0	1	0	0	0	0	18262	1103	39	0	1374	0	ZXDA	23	57935826	In_Frame_Del	DEL	GGT	TCGA-B2-4101-01A-02D-1458-08	25101158	57935826	97334734	39	14066											
KIF1B	23095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10364568	10364568	+	Silent	SNP	T	T	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	10364568	T	C	10364568	2	2	221	1	0	0	0	0	0	0	0	1	8291	1722	60	3		3	KIF1B	1	10364568	Silent	SNP	T	TCGA-B2-5633-01A-01D-1534-10		10364568	238886053	1	14067											
UBIAD1	29914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11333752	11333752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	11333752	C	A	11333752	3	1	221	1	0	0	0	0	1	0	0	0	16897	623	22	4	166	4	UBIAD1	1	11333752	Missense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10	969184	11333752	237916869	2	14068											
EPS15	2060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	51887534	51887534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	51887534	G	C	51887534	3	2	221	1	0	0	0	0	1	0	0	0	5194	942	33	4	1705	4	EPS15	1	51887534	Missense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10	40553782	51887534	197363087	3	14069											
SLC35D1	23169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67486082	67486082	+	Silent	SNP	A	A	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	67486082	A	C	67486082	2	2	221	1	0	0	0	0	0	0	0	1	14594	291	11	5		5	SLC35D1	1	67486082	Silent	SNP	A	TCGA-B2-5633-01A-01D-1534-10	15598548	67486082	181764539	4	14070											
SLC6A17	388662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110740166	110740166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	110740166	G	T	110740166	3	4	221	1	0	0	0	0	1	0	0	0	14693	971	34	4	1798	4	SLC6A17	1	110740166	Missense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10	43254084	110740166	138510455	5	14071											
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu	37	1	144931293	144931293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	144931293	T	A	144931293	3	1	221	1	0	0	0	0	1	0	0	0	11650	1551	54	5	7283	5	PDE4DIP	1	144931293	Missense_Mutation	SNP	T	TCGA-B2-5633-01A-01D-1534-10	34191127	144931293	104319328	6	14072											
DNM3	26052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	171956945	171956945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	171956945	G	A	171956945	3	1	221	1	0	0	0	0	1	0	0	0	4675	1130	39	1	395	1	DNM3	1	171956945	Missense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10	27025652	171956945	77293676	7	14073											
IARS2	55699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	220316404	220316404	+	Silent	SNP	C	C	T	rs113314730		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	220316404	C	T	220316404	2	4	221	1	0	0	0	0	0	0	0	1	7481	845	30	2		2	IARS2	1	220316404	Silent	SNP	C	TCGA-B2-5633-01A-01D-1534-10	48359459	220316404	28934217	8	14074											
IL18RAP	8807	hgsc.bcm.edu;ucsc.edu	37	2	103067362	103067362	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	-	103067362	G	-	103067362	7	5	221	1	0	1	0	1	0	0	0	0	7655	1029	36	0	1299	0	IL18RAP	2	103067362	Frame_Shift_Del	DEL	G	TCGA-B2-5633-01A-01D-1534-10		103067362	140132011	9	14075											
TNS1	7145	broad.mit.edu;ucsc.edu	37	2	218713396	218713396	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	G	218713396	G	G	218713396	3	3	221	1	0	0	0	0	1	0	0	0	16355	623	22	4	3806	4	TNS1	2	218713396	Missense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10	115646034	218713396	24485977	10	14076											
SEMA3G	56920	broad.mit.edu;ucsc.edu	37	3	52472210	52472210	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	52472210	T	T	52472210	3	4	221	1	0	0	0	0	1	0	0	0	14043	710	25	2	845	2	SEMA3G	3	52472210	Missense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10		52472210	145550220	11	14077											
GAP43	2596	broad.mit.edu;ucsc.edu	37	3	115394971	115394971	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	G	115394971	G	G	115394971	3	3	221	1	0	0	0	0	1	0	0	0	6242	63	3	3	290	3	GAP43	3	115394971	Missense_Mutation	SNP	A	TCGA-B2-5633-01A-01D-1534-10	62922761	115394971	82627459	12	14078											
DHX36	170506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	154018911	154018911	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	154018911	A	T	154018911	3	4	221	1	0	0	0	0	1	0	0	0	4511	43	2	5	1867	5	DHX36	3	154018911	Missense_Mutation	SNP	A	TCGA-B2-5633-01A-01D-1534-10	38623940	154018911	44003519	13	14079											
ATP13A5	344905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	193039503	193039503	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	193039503	C	A	193039503	4	1	221	1	0	0	0	0	0	1	0	0	1127	922	32	4	1832	4	ATP13A5	3	193039503	Nonsense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10	39020592	193039503	4982927	14	14080											
TLR10	81793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	38776455	38776455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	38776455	C	T	38776455	3	4	221	1	0	0	0	0	1	0	0	0	15962	826	29	2	1682	2	TLR10	4	38776455	Missense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10		38776455	152377821	15	14081											
WDFY3	23001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	85758222	85758222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	85758222	T	C	85758222	3	2	221	1	0	0	0	0	1	0	0	0	17282	1725	60	3	10435	3	WDFY3	4	85758222	Missense_Mutation	SNP	T	TCGA-B2-5633-01A-01D-1534-10	46981767	85758222	105396054	16	14082											
NMUR2	56923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	151784061	151784061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	151784061	G	A	151784061	3	1	221	1	0	0	0	0	1	0	0	0	10514	1145	40	1	649	1	NMUR2	5	151784061	Missense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10		151784061	29131199	17	14083											
FAM114A2	10827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	153372626	153372626	+	Silent	SNP	G	G	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	153372626	G	C	153372626	2	2	221	1	0	0	0	0	0	0	0	1	5408	929	33	4		4	FAM114A2	5	153372626	Silent	SNP	G	TCGA-B2-5633-01A-01D-1534-10	1588565	153372626	27542634	18	14084											
LARP1	23367	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	154183854	154183854	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	154183854	A	T	154183854	3	4	221	1	0	0	0	0	1	0	0	0	8635	391	14	5	2356	5	LARP1	5	154183854	Missense_Mutation	SNP	A	TCGA-B2-5633-01A-01D-1534-10	811228	154183854	26731406	19	14085											
CCDC99	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	169028336	169028336	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	169028336	T	A	169028336	3	1	221	1	0	0	0	0	1	0	0	0	2878	1403	49	5	1415	5	CCDC99	5	169028336	Missense_Mutation	SNP	T	TCGA-B2-5633-01A-01D-1534-10	14844482	169028336	11886924	20	14086											
MUC21	394263	hgsc.bcm.edu	37	6	30955191	30955211	+	In_Frame_Del	DEL	GTCCAGTGGGGCCAGCACTGC	GTCCAGTGGGGCCAGCACTGC	-	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	GTCCAGTGGGGCCAGCACTGC	GTCCAGTGGGGCCAGCACTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	-	30955211	GTCCAGTGGGGCCAGCACTGC	-	30955191	7	5	221	1	0	1	0	1	0	0	0	0	9984	1364	48	0	1245	0	MUC21	6	30955191	In_Frame_Del	DEL	GTCCAGTGGGGCCAGCACTGC	TCGA-B2-5633-01A-01D-1534-10		30955191	140159876	21	14087											
ROS1	6098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	117609777	117609777	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	G	117609777	C	G	117609777	3	3	221	1	0	0	0	0	1	0	0	0	13544	864	30	4	125	4	ROS1	6	117609777	Missense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10	86654586	117609777	53505290	22	14088											
CENPW	387103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	126667412	126667412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	126667412	G	C	126667412	3	2	221	1	0	0	0	0	1	0	0	0	3246	1377	48	4	194	4	CENPW	6	126667412	Missense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10	9057635	126667412	44447655	23	14089											
OR2A4	79541	hgsc.bcm.edu	37	6	132021904	132021904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	G	132021904	A	G	132021904	3	3	221	1	0	0	0	0	1	0	0	0	10986	101	4	3	297	3	OR2A4	6	132021904	Missense_Mutation	SNP	A	TCGA-B2-5633-01A-01D-1534-10	5354492	132021904	39093163	24	14090											
LRWD1	222229	broad.mit.edu	37	7	102108803	102108803	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	102108803	A	A	102108803	3	1	221	1	0	0	0	0	1	0	0	0	9054	1609	56	5	924	5	LRWD1	7	102108803	Missense_Mutation	SNP	T	TCGA-B2-5633-01A-01D-1534-10		102108803	57029860	25	14091											
MLL3	58508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151873651	151873651	+	Missense_Mutation	SNP	G	G	A	rs187761353	by1000genomes	TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	151873651	G	A	151873651	3	1	221	1	0	0	0	0	1	0	0	0	9629	1116	39	1	5936	1	MLL3	7	151873651	Missense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10	49764848	151873651	7265012	26	14092											
GDF6	392255	broad.mit.edu	37	8	97172667	97172668	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	97172668	A	A	97172667	7	5	221	1	0	1	1	0	0	0	0	0	6324	1116	39	0	1121	0	GDF6	8	97172667	Frame_Shift_Ins	INS	-	TCGA-B2-5633-01A-01D-1534-10		97172667	49191355	27	14093											
OR52A5	390054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5152922	5152922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	5152922	T	C	5152922	3	2	221	1	0	0	0	0	1	0	0	0	11117	1450	50	3	2	3	OR52A5	11	5152922	Missense_Mutation	SNP	T	TCGA-B2-5633-01A-01D-1534-10		5152922	129853594	28	14094											
IGSF22	283284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18738324	18738324	+	Silent	SNP	G	G	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	18738324	G	A	18738324	2	1	221	1	0	0	0	0	0	0	0	1	7607	933	33	2		2	IGSF22	11	18738324	Silent	SNP	G	TCGA-B2-5633-01A-01D-1534-10	13585402	18738324	116268192	29	14095											
SLC15A3	51296	broad.mit.edu;ucsc.edu	37	11	60709588	60709588	+	Silent	SNP	A	C	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	60709588	C	C	60709588	2	2	221	1	0	0	0	0	0	0	0	1	14413	233	9	5		5	SLC15A3	11	60709588	Silent	SNP	A	TCGA-B2-5633-01A-01D-1534-10	41971264	60709588	74296928	30	14096											
NEU3	10825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	74717078	74717078	+	Silent	SNP	A	A	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	74717078	A	T	74717078	2	4	221	1	0	0	0	0	0	0	0	1	10350	146	6	5		5	NEU3	11	74717078	Silent	SNP	A	TCGA-B2-5633-01A-01D-1534-10	14007490	74717078	60289438	31	14097											
HIST4H4	121504	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14923794	14923794	+	Silent	SNP	C	C	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	14923794	C	T	14923794	2	4	221	1	0	0	0	0	0	0	0	1	7192	796	28	2		2	HIST4H4	12	14923794	Silent	SNP	C	TCGA-B2-5633-01A-01D-1534-10		14923794	118928101	32	14098											
SARNP	84324	hgsc.bcm.edu;ucsc.edu	37	12	56194628	56194628	+	RNA	SNP	T	T	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	56194628	T	A	56194628	1	1	221	0	1	0	0	0	0	0	0	0	13856	1450	50	5		5	SARNP	12	56194628	RNA	SNP	T	TCGA-B2-5633-01A-01D-1534-10	41270834	56194628	77657267	33	14099											
CHFR	55743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133454165	133454165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	133454165	C	T	133454165	3	4	221	1	0	0	0	0	1	0	0	0	3339	507	18	2	1946	2	CHFR	12	133454165	Missense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10	77259537	133454165	397730	34	14100											
FARP1	10160	broad.mit.edu;ucsc.edu	37	13	99083480	99083480	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	99083480	T	T	99083480	4	4	221	1	0	0	0	0	0	1	0	0	5683	1175	41	4	2378	4	FARP1	13	99083480	Nonsense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10		99083480	16086398	35	14101											
NFAT5	10725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69725994	69725994	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	69725994	T	A	69725994	3	1	221	1	0	0	0	0	1	0	0	0	10367	1435	50	5	2316	5	NFAT5	16	69725994	Missense_Mutation	SNP	T	TCGA-B2-5633-01A-01D-1534-10		69725994	20628759	36	14102	182	2									
NFAT5	10725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69725995	69725995	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	69725995	C	A	69725995	4	1	221	1	0	0	0	0	0	1	0	0	10367	838	29	4	2317	4	NFAT5	16	69725995	Nonsense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10	1	69725995	20628758	37	14103	182	2									
LAMA3	3909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	21417039	21417039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	21417039	G	A	21417039	3	1	221	1	0	0	0	0	1	0	0	0	8614	1203	42	2	3177	2	LAMA3	18	21417039	Missense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10		21417039	56660209	38	14104											
FCGBP	8857	broad.mit.edu	37	19	40383839	40383840	+	Frame_Shift_Ins	INS	-	GT	GT	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	GT	40383840	GT	GT	40383839	7	5	221	1	0	1	1	0	0	0	0	0	5785	1161	41	0	6510	0	FCGBP	19	40383839	Frame_Shift_Ins	INS	-	TCGA-B2-5633-01A-01D-1534-10		40383839	18745144	39	14105											
TEAD2	8463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49852034	49852034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	49852034	G	A	49852034	3	1	221	1	0	0	0	0	1	0	0	0	15751	1057	37	1	702	1	TEAD2	19	49852034	Missense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10	9468195	49852034	9276949	40	14106											
KLK3	354	broad.mit.edu	37	19	51361427	51361427	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	51361427	C	C	51361427	3	2	221	1	0	0	0	0	1	0	0	0	8412	1551	54	3	363	3	KLK3	19	51361427	Missense_Mutation	SNP	T	TCGA-B2-5633-01A-01D-1534-10	1509393	51361427	7767556	41	14107											
RASSF2	9770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	4776560	4776560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	4776560	C	T	4776560	3	4	221	1	0	0	0	0	1	0	0	0	13099	768	27	1	824	1	RASSF2	20	4776560	Missense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10		4776560	58248960	42	14108											
GDF5	8200	broad.mit.edu;ucsc.edu	37	20	34021789	34021789	+	Missense_Mutation	SNP	C	T	T	rs121909347		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	T	34021789	T	T	34021789	3	4	221	1	0	0	0	0	1	0	0	0	6323	797	28	2	85	2	GDF5	20	34021789	Missense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10	29245229	34021789	29003731	43	14109											
RBM39	9584	hgsc.bcm.edu	37	20	34320047	34320047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	C	34320047	T	C	34320047	3	2	221	1	0	0	0	0	1	0	0	0	13146	1609	56	3	1536	3	RBM39	20	34320047	Missense_Mutation	SNP	T	TCGA-B2-5633-01A-01D-1534-10	298258	34320047	28705473	44	14110											
TOP1	7150	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39744972	39744972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	39744972	G	A	39744972	3	1	221	1	0	0	0	0	1	0	0	0	16375	1261	44	2	1828	2	TOP1	20	39744972	Missense_Mutation	SNP	G	TCGA-B2-5633-01A-01D-1534-10	5424925	39744972	23280548	45	14111											
ZC3H7B	23264	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	41742095	41742095	+	Silent	SNP	G	G	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	41742095	G	A	41742095	2	1	221	1	0	0	0	0	0	0	0	1	17585	1161	41	2		2	ZC3H7B	22	41742095	Silent	SNP	G	TCGA-B2-5633-01A-01D-1534-10		41742095	9562471	46	14112											
PACSIN2	11252	broad.mit.edu;hgsc.bcm.edu	37	22	43287181	43287181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	G	43287181	C	G	43287181	3	3	221	1	0	0	0	0	1	0	0	0	11382	564	20	4	1267	4	PACSIN2	22	43287181	Missense_Mutation	SNP	C	TCGA-B2-5633-01A-01D-1534-10	1545086	43287181	8017385	47	14113											
SHROOM4	57477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	50556989	50556989	+	Silent	SNP	G	G	A	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	A	50556989	G	A	50556989	2	1	221	1	0	0	0	0	0	0	0	1	14309	1140	40	1		1	SHROOM4	23	50556989	Silent	SNP	G	TCGA-B2-5633-01A-01D-1534-10		50556989	104713571	48	14114											
UBL4A	8266	broad.mit.edu	37	X	153714611	153714611	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B2-5633-01A-01D-1534-10	TCGA-B2-5633-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2d84b133-d6fd-403e-a514-4640f8db7e64	e00d5adc-97fe-4157-9bc9-ff9bfab2b43a	-	153714611	-	-	153714611	7	5	221	1	0	1	0	1	0	0	0	0	16899	1348	47	0	375	0	UBL4A	23	153714611	Frame_Shift_Del	DEL	G	TCGA-B2-5633-01A-01D-1534-10	103157622	153714611	1555949	49	14115											
CHD5	26038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	6214898	6214898	+	Silent	SNP	A	A	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	6214898	A	C	6214898	2	2	222	1	0	0	0	0	0	0	0	1	3330	146	6	5		5	CHD5	1	6214898	Silent	SNP	A	TCGA-B2-5635-01A-01D-1534-10		6214898	243035723	1	14116											
AKR7A3	22977	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19611597	19611597	+	Silent	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	19611597	A	G	19611597	2	3	222	1	0	0	0	0	0	0	0	1	476	214	8	3		3	AKR7A3	1	19611597	Silent	SNP	A	TCGA-B2-5635-01A-01D-1534-10	13396699	19611597	229639024	2	14117											
KTI12	112970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	52498994	52498994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	52498994	G	A	52498994	3	1	222	1	0	0	0	0	1	0	0	0	8591	1087	38	1	628	1	KTI12	1	52498994	Missense_Mutation	SNP	G	TCGA-B2-5635-01A-01D-1534-10	32887397	52498994	196751627	3	14118											
COPA	1314	hgsc.bcm.edu;ucsc.edu	37	1	160267213	160267220	+	Frame_Shift_Del	DEL	TCCTTTCT	TCCTTTCT	-	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	TCCTTTCT	TCCTTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	-	160267220	TCCTTTCT	-	160267213	7	5	222	1	0	1	0	1	0	0	0	0	3729	1667	58	0	1543	0	COPA	1	160267213	Frame_Shift_Del	DEL	TCCTTTCT	TCGA-B2-5635-01A-01D-1534-10	107768219	160267213	88983408	4	14119											
CR1	1378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	207685001	207685001	+	Splice_Site	SNP	T	T	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	207685001	T	A	207685001	5	1	222	1	0	0	0	0	0	0	1	0	3842	1710	59	5	503	5	CR1	1	207685001	Splice_Site	SNP	T	TCGA-B2-5635-01A-01D-1534-10	47417788	207685001	41565620	5	14120											
PXDN	7837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1652347	1652347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	T	1652347	C	T	1652347	3	4	222	1	0	0	0	0	1	0	0	0	12860	739	26	2	1262	2	PXDN	2	1652347	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10		1652347	241547026	6	14121											
PDIA6	10130	broad.mit.edu;ucsc.edu	37	2	10924426	10924426	+	Silent	SNP	G	A	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	10924426	A	A	10924426	2	1	222	1	0	0	0	0	0	0	0	1	11679	1277	45	2		2	PDIA6	2	10924426	Silent	SNP	G	TCGA-B2-5635-01A-01D-1534-10	9272079	10924426	232274947	7	14122											
NBAS	51594	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	15564514	15564514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	15564514	C	A	15564514	3	1	222	1	0	0	0	0	1	0	0	0	10193	826	29	4	4733	4	NBAS	2	15564514	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10	4640088	15564514	227634859	8	14123											
PKP4	8502	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	159526361	159526361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	159526361	C	A	159526361	3	1	222	1	0	0	0	0	1	0	0	0	11994	710	25	4	2920	4	PKP4	2	159526361	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10	143961847	159526361	83673012	9	14124											
LRP2	4036	hgsc.bcm.edu	37	2	169989163	169989163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	169989163	T	C	169989163	3	2	222	1	0	0	0	0	1	0	0	0	8963	1609	56	3	330	3	LRP2	2	169989163	Missense_Mutation	SNP	T	TCGA-B2-5635-01A-01D-1534-10	10462802	169989163	73210210	10	14125	183	2									
LRP2	4036	hgsc.bcm.edu;ucsc.edu	37	2	169989165	169989165	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	-	169989165	A	-	169989165	7	5	222	1	0	1	0	1	0	0	0	0	8963	446	16	0	332	0	LRP2	2	169989165	Frame_Shift_Del	DEL	A	TCGA-B2-5635-01A-01D-1534-10	2	169989165	73210208	11	14126	183	2									
OGG1	4968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9792671	9792671	+	Silent	SNP	G	G	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	9792671	G	C	9792671	2	2	222	1	0	0	0	0	0	0	0	1	10852	1103	39	4		4	OGG1	3	9792671	Silent	SNP	G	TCGA-B2-5635-01A-01D-1534-10		9792671	188229759	12	14127											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188287	10188287	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	-	10188287	G	-	10188287	7	5	222	1	0	1	0	1	0	0	0	0	17174	1117	39	0	436	0	VHL	3	10188287	Frame_Shift_Del	DEL	G	TCGA-B2-5635-01A-01D-1534-10	395616	10188287	187834143	13	14128											
CADPS	8618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	62423832	62423832	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	62423832	C	G	62423832	3	3	222	1	0	0	0	0	1	0	0	0	2572	855	30	4	349	4	CADPS	3	62423832	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10	52235545	62423832	135598598	14	14129											
KIAA2018	205717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113379615	113379615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	113379615	T	C	113379615	3	2	222	1	0	0	0	0	1	0	0	0	8275	1696	59	3	5827	3	KIAA2018	3	113379615	Missense_Mutation	SNP	T	TCGA-B2-5635-01A-01D-1534-10	50955783	113379615	84642815	15	14130											
EIF2A	83939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	150264590	150264590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	150264590	A	G	150264590	3	3	222	1	0	0	0	0	1	0	0	0	4997	217	8	3	3	3	EIF2A	3	150264590	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10	36884975	150264590	47757840	16	14131											
MCCC1	56922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	182759471	182759471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	182759471	G	C	182759471	3	2	222	1	0	0	0	0	1	0	0	0	9381	971	34	4	1062	4	MCCC1	3	182759471	Missense_Mutation	SNP	G	TCGA-B2-5635-01A-01D-1534-10	32494881	182759471	15262959	17	14132											
MUC4	4585	hgsc.bcm.edu	37	3	195508167	195508167	+	Silent	SNP	G	G	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	195508167	G	A	195508167	2	1	222	1	0	0	0	0	0	0	0	1	9985	1335	47	2		2	MUC4	3	195508167	Silent	SNP	G	TCGA-B2-5635-01A-01D-1534-10	12748696	195508167	2514263	18	14133	184	3									
MUC4	4585	hgsc.bcm.edu	37	3	195508175	195508175	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	195508175	G	C	195508175	3	2	222	1	0	0	0	0	1	0	0	0	9985	1174	41	4		4	MUC4	3	195508175	Missense_Mutation	SNP	G	TCGA-B2-5635-01A-01D-1534-10	8	195508175	2514255	19	14134	184	3									
MUC4	4585	hgsc.bcm.edu	37	3	195508178	195508178	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	195508178	G	C	195508178	3	2	222	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195508178	Missense_Mutation	SNP	G	TCGA-B2-5635-01A-01D-1534-10	3	195508178	2514252	20	14135	184	3									
MUC4	4585	hgsc.bcm.edu	37	3	195514998	195515045	+	In_Frame_Del	DEL	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	-	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	-	195515045	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	-	195514998	7	5	222	1	0	1	0	1	0	0	0	0	9985	1219	43	0		0	MUC4	3	195514998	In_Frame_Del	DEL	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	TCGA-B2-5635-01A-01D-1534-10	6820	195514998	2507432	21	14136											
ACOX3	8310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	8418179	8418179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	8418179	A	G	8418179	3	3	222	1	0	0	0	0	1	0	0	0	160	420	15	3	2100	3	ACOX3	4	8418179	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10		8418179	182736097	22	14137											
SLIT2	9353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	20543097	20543097	+	Silent	SNP	T	T	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	20543097	T	C	20543097	2	2	222	1	0	0	0	0	0	0	0	1	14753	1751	61	3		3	SLIT2	4	20543097	Silent	SNP	T	TCGA-B2-5635-01A-01D-1534-10	12124918	20543097	170611179	23	14138											
RBM47	54502	broad.mit.edu	37	4	40440590	40440590	+	Silent	SNP	G	A	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	40440590	A	A	40440590	2	1	222	1	0	0	0	0	0	0	0	1	13154	1136	40	1		1	RBM47	4	40440590	Silent	SNP	G	TCGA-B2-5635-01A-01D-1534-10	19897493	40440590	150713686	24	14139											
DSPP	1834	hgsc.bcm.edu	37	4	88536934	88536934	+	Silent	SNP	C	C	T	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	T	88536934	C	T	88536934	2	4	222	1	0	0	0	0	0	0	0	1	4784	767	27	1		1	DSPP	4	88536934	Silent	SNP	C	TCGA-B2-5635-01A-01D-1534-10	48096344	88536934	102617342	25	14140											
NDUFC1	4717	hgsc.bcm.edu	37	4	140216900	140216900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	T	140216900	C	T	140216900	3	4	222	1	0	0	0	0	1	0	0	0	10296	681	24	2	189	2	NDUFC1	4	140216900	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10	51679966	140216900	50937376	26	14141											
DNAH5	1767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	13719054	13719054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	13719054	A	C	13719054	3	2	222	1	0	0	0	0	1	0	0	0	4606	275	10	5	1470	5	DNAH5	5	13719054	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10		13719054	167196206	27	14142											
PPP2R2B	5521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	146070789	146070789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	T	146070789	G	T	146070789	3	4	222	1	0	0	0	0	1	0	0	0	12395	962	34	4	1006	4	PPP2R2B	5	146070789	Missense_Mutation	SNP	G	TCGA-B2-5635-01A-01D-1534-10	132351735	146070789	34844471	28	14143											
C5orf25	0	broad.mit.edu	37	5	175717637	175717637	+	Silent	SNP	G	A	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	175717637	A	A	175717637	2	1	222	1	0	0	0	0	0	0	0	1	2290	1218	42	2		2	C5orf25	5	175717637	Silent	SNP	G	TCGA-B2-5635-01A-01D-1534-10	29646848	175717637	5197623	29	14144											
GCNT2	2651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	10621587	10621587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	10621587	T	C	10621587	3	2	222	1	0	0	0	0	1	0	0	0	6308	1725	60	3	2787	3	GCNT2	6	10621587	Missense_Mutation	SNP	T	TCGA-B2-5635-01A-01D-1534-10		10621587	160493480	30	14145											
KIAA1586	57691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56917523	56917523	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	56917523	T	A	56917523	3	1	222	1	0	0	0	0	1	0	0	0	8252	1838	64	5	240	5	KIAA1586	6	56917523	Missense_Mutation	SNP	T	TCGA-B2-5635-01A-01D-1534-10	46295936	56917523	114197544	31	14146											
DOPEY1	23033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	83872600	83872600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	83872600	G	C	83872600	3	2	222	1	0	0	0	0	1	0	0	0	4709	1145	40	4	7196	4	DOPEY1	6	83872600	Missense_Mutation	SNP	G	TCGA-B2-5635-01A-01D-1534-10	26955077	83872600	87242467	32	14147											
AKR1B15	441282	broad.mit.edu;hgsc.bcm.edu	37	7	134261166	134261166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	134261166	A	G	134261166	3	3	222	1	0	0	0	0	1	0	0	0	468	14	1	3	835	3	AKR1B15	7	134261166	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10		134261166	24877497	33	14148											
ESCO2	157570	hgsc.bcm.edu;ucsc.edu	37	8	27634237	27634237	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	-	27634237	A	-	27634237	7	5	222	1	0	1	0	1	0	0	0	0	5251	131	5	0	418	0	ESCO2	8	27634237	Frame_Shift_Del	DEL	A	TCGA-B2-5635-01A-01D-1534-10		27634237	118729785	34	14149											
PLEKHA2	59339	hgsc.bcm.edu;ucsc.edu	37	8	38775478	38775479	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	-	38775479	TG	-	38775478	7	5	222	1	0	1	0	1	0	0	0	0	12063	1580	55	0	33	0	PLEKHA2	8	38775478	Frame_Shift_Del	DEL	TG	TCGA-B2-5635-01A-01D-1534-10	11141241	38775478	107588544	35	14150											
KCNV2	169522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	2729474	2729474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	2729474	A	G	2729474	3	3	222	1	0	0	0	0	1	0	0	0	8102	275	10	3	1391	3	KCNV2	9	2729474	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10		2729474	138483957	36	14151											
DAPK1	1612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	90258354	90258354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	90258354	A	G	90258354	3	3	222	1	0	0	0	0	1	0	0	0	4237	217	8	3	1020	3	DAPK1	9	90258354	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10	87528880	90258354	50955077	37	14152											
NEBL	10529	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	21158725	21158725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	21158725	C	G	21158725	3	3	222	1	0	0	0	0	1	0	0	0	10310	922	32	4	2610	4	NEBL	10	21158725	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10		21158725	114376022	38	14153											
MYST4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	76790353	76790353	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	76790353	C	G	76790353	3	3	222	1	0	0	0	0	1	0	0	0	10112	855	30	4	5833	4	MYST4	10	76790353	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10	55631628	76790353	58744394	39	14154											
C10orf93	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	134743171	134743171	+	Missense_Mutation	SNP	G	G	A	rs149229934	byfrequency	TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	134743171	G	A	134743171	3	1	222	1	0	0	0	0	1	0	0	0	1627	1087	38	1	217	1	C10orf93	10	134743171	Missense_Mutation	SNP	G	TCGA-B2-5635-01A-01D-1534-10	57952818	134743171	791576	40	14155											
CHRDL2	25884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	74413875	74413875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	T	74413875	C	T	74413875	3	4	222	1	0	0	0	0	1	0	0	0	3376	855	30	2	287	2	CHRDL2	11	74413875	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10		74413875	60592641	41	14156											
AMOTL1	154810	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	94592715	94592715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	94592715	A	G	94592715	3	3	222	1	0	0	0	0	1	0	0	0	583	43	2	3	2004	3	AMOTL1	11	94592715	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10	20178840	94592715	40413801	42	14157											
RDX	5962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	110124794	110124794	+	Missense_Mutation	SNP	C	C	T	rs150863373		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	T	110124794	C	T	110124794	3	4	222	1	0	0	0	0	1	0	0	0	13211	652	23	1	939	1	RDX	11	110124794	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10	15532079	110124794	24881722	43	14158											
HYOU1	10525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118917418	118917418	+	Silent	SNP	G	G	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	118917418	G	A	118917418	2	1	222	1	0	0	0	0	0	0	0	1	7477	991	35	2		2	HYOU1	11	118917418	Silent	SNP	G	TCGA-B2-5635-01A-01D-1534-10	8792624	118917418	16089098	44	14159											
RTN1	6252	broad.mit.edu;ucsc.edu	37	14	60212848	60212848	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	60212848	C	C	60212848	3	2	222	1	0	0	0	0	1	0	0	0	13738	1667	58	3	1834	3	RTN1	14	60212848	Missense_Mutation	SNP	T	TCGA-B2-5635-01A-01D-1534-10		60212848	47136692	45	14160											
PLA2G4F	255189	hgsc.bcm.edu;ucsc.edu	37	15	42437860	42437861	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	42437861	-	A	42437860	7	5	222	1	0	1	1	0	0	0	0	0	12013	710	25	0	876	0	PLA2G4F	15	42437860	Frame_Shift_Ins	INS	-	TCGA-B2-5635-01A-01D-1534-10		42437860	60093532	46	14161											
DUOXA1	90527	hgsc.bcm.edu;ucsc.edu	37	15	45409941	45409941	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	-	45409941	C	-	45409941	7	5	222	1	0	1	0	1	0	0	0	0	4804	739	26	0	231	0	DUOXA1	15	45409941	Frame_Shift_Del	DEL	C	TCGA-B2-5635-01A-01D-1534-10	2972081	45409941	57121451	47	14162											
TM6SF1	53346	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	83805287	83805287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	83805287	A	G	83805287	3	3	222	1	0	0	0	0	1	0	0	0	15984	180	7	3	1014	3	TM6SF1	15	83805287	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10	38395346	83805287	18726105	48	14163											
IGF1R	3480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	99192876	99192876	+	Silent	SNP	G	G	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	99192876	G	A	99192876	2	1	222	1	0	0	0	0	0	0	0	1	7578	1074	38	1		1	IGF1R	15	99192876	Silent	SNP	G	TCGA-B2-5635-01A-01D-1534-10	15387589	99192876	3338516	49	14164											
IFT140	9742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1652468	1652468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	1652468	T	A	1652468	3	1	222	1	0	0	0	0	1	0	0	0	7563	1580	55	5	4228	5	IFT140	16	1652468	Missense_Mutation	SNP	T	TCGA-B2-5635-01A-01D-1534-10		1652468	88702285	50	14165											
TSNAXIP1	55815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67859889	67859889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	T	67859889	A	T	67859889	3	4	222	1	0	0	0	0	1	0	0	0	16644	304	11	5	918	5	TSNAXIP1	16	67859889	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10	66207421	67859889	22494864	51	14166	185	2									
TSNAXIP1	55815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67859890	67859890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	67859890	G	A	67859890	3	1	222	1	0	0	0	0	1	0	0	0	16644	971	34	2	919	2	TSNAXIP1	16	67859890	Missense_Mutation	SNP	G	TCGA-B2-5635-01A-01D-1534-10	1	67859890	22494863	52	14167	185	2									
CBFA2T3	863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	88945789	88945789	+	Silent	SNP	G	G	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	88945789	G	A	88945789	2	1	222	1	0	0	0	0	0	0	0	1	2700	1136	40	1		1	CBFA2T3	16	88945789	Silent	SNP	G	TCGA-B2-5635-01A-01D-1534-10	21085899	88945789	1408964	53	14168											
MBTD1	54799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	49279412	49279412	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	T	49279412	A	T	49279412	3	4	222	1	0	0	0	0	1	0	0	0	9367	14	1	5	824	5	MBTD1	17	49279412	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10		49279412	31915798	54	14169											
MED13	9969	broad.mit.edu;hgsc.bcm.edu	37	17	60072679	60072679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	60072679	A	G	60072679	3	3	222	1	0	0	0	0	1	0	0	0	9437	159	6	3	4593	3	MED13	17	60072679	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10	10793267	60072679	21122531	55	14170											
CD300C	10871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72537855	72537855	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	72537855	C	G	72537855	3	3	222	1	0	0	0	0	1	0	0	0	2999	768	27	4	130	4	CD300C	17	72537855	Missense_Mutation	SNP	C	TCGA-B2-5635-01A-01D-1534-10	12465176	72537855	8657355	56	14171											
DSG1	1828	broad.mit.edu;ucsc.edu	37	18	28935225	28935225	+	Silent	SNP	C	T	T	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	T	28935225	T	T	28935225	2	4	222	1	0	0	0	0	0	0	0	1	4778	564	20	2		2	DSG1	18	28935225	Silent	SNP	C	TCGA-B2-5635-01A-01D-1534-10		28935225	49142023	57	14172											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9066178	9066178	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	9066178	G	C	9066178	3	2	222	1	0	0	0	0	1	0	0	0	9980	933	33	4	22583	4	MUC16	19	9066178	Missense_Mutation	SNP	G	TCGA-B2-5635-01A-01D-1534-10		9066178	50062805	58	14173											
ZNF433	163059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12125862	12125862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	G	12125862	A	G	12125862	3	3	222	1	0	0	0	0	1	0	0	0	17919	217	8	3	205	3	ZNF433	19	12125862	Missense_Mutation	SNP	A	TCGA-B2-5635-01A-01D-1534-10	3059684	12125862	47003121	59	14174											
ZNF99	7652	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	22952718	22952718	+	Splice_Site	SNP	C	C	A	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	A	22952718	C	A	22952718	5	1	222	1	0	0	0	0	0	0	1	0	18216	492	17	4	3073	4	ZNF99	19	22952718	Splice_Site	SNP	C	TCGA-B2-5635-01A-01D-1534-10	10826856	22952718	36176265	60	14175											
SLC5A3	6526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	35467806	35467806	+	Silent	SNP	G	G	C	novel		TCGA-B2-5635-01A-01D-1534-10	TCGA-B2-5635-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c0fcca3b-00cb-44d0-ae4b-1cc7f6535759	26808e90-5813-4283-a5e4-7bc55b3141e2	C	35467806	G	C	35467806	2	2	222	1	0	0	0	0	0	0	0	1	14679	1248	44	4		4	SLC5A3	21	35467806	Silent	SNP	G	TCGA-B2-5635-01A-01D-1534-10		35467806	12662089	61	14176											
EIF4G3	8672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	21226401	21226401	+	Silent	SNP	T	T	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	21226401	T	C	21226401	2	2	223	1	0	0	0	0	0	0	0	1	5040	1625	57	3		3	EIF4G3	1	21226401	Silent	SNP	T	TCGA-B2-5641-01A-01D-1534-10		21226401	228024220	1	14177											
C8B	732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	57415368	57415368	+	Missense_Mutation	SNP	G	G	A	rs150146785	bycluster;byfrequency;by1000genomes	TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	57415368	G	A	57415368	3	1	223	1	0	0	0	0	1	0	0	0	2419	1145	40	1	1079	1	C8B	1	57415368	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	36188967	57415368	191835253	2	14178											
SLC44A3	126969	broad.mit.edu;ucsc.edu	37	1	95286513	95286513	+	Silent	SNP	A	G	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	95286513	G	G	95286513	2	3	223	1	0	0	0	0	0	0	0	1	14650	175	7	3		3	SLC44A3	1	95286513	Silent	SNP	A	TCGA-B2-5641-01A-01D-1534-10	37871145	95286513	153964108	3	14179											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201029869	201029869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	201029869	C	T	201029869	3	4	223	1	0	0	0	0	1	0	0	0	2549	507	18	2	2366	2	CACNA1S	1	201029869	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10	105743356	201029869	48220752	4	14180											
SPRED2	200734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	65541212	65541212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	65541212	C	T	65541212	3	4	223	1	0	0	0	0	1	0	0	0	15105	623	22	2	580	2	SPRED2	2	65541212	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10		65541212	177658161	5	14181											
FBXO41	150726	broad.mit.edu;hgsc.bcm.edu	37	2	73496700	73496700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	73496700	C	T	73496700	3	4	223	1	0	0	0	0	1	0	0	0	5757	652	23	1	2616	1	FBXO41	2	73496700	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10	7955488	73496700	169702673	6	14182											
MAP3K2	10746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128066323	128066323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	128066323	C	A	128066323	3	1	223	1	0	0	0	0	1	0	0	0	9257	884	31	4	395	4	MAP3K2	2	128066323	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10	54569623	128066323	115133050	7	14183											
SCN7A	6332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	167328884	167328884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	167328884	G	A	167328884	3	1	223	1	0	0	0	0	1	0	0	0	13936	1294	45	2	4617	2	SCN7A	2	167328884	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	39262561	167328884	75870489	8	14184											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179439168	179439168	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	179439168	A	C	179439168	4	2	223	1	0	0	0	0	0	1	0	0	16747	224	8	5	36436	5	TTN	2	179439168	Nonsense_Mutation	SNP	A	TCGA-B2-5641-01A-01D-1534-10	12110284	179439168	63760205	9	14185											
PDE6B	5158	broad.mit.edu;ucsc.edu	37	4	649741	649741	+	Silent	SNP	C	G	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	649741	G	G	649741	2	3	223	1	0	0	0	0	0	0	0	1	11653	639	23	4		4	PDE6B	4	649741	Silent	SNP	C	TCGA-B2-5641-01A-01D-1534-10		649741	190504535	10	14186											
PGM2	55276	broad.mit.edu;ucsc.edu	37	4	37839173	37839173	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	37839173	G	G	37839173	3	3	223	1	0	0	0	0	1	0	0	0	11805	159	6	3	393	3	PGM2	4	37839173	Missense_Mutation	SNP	A	TCGA-B2-5641-01A-01D-1534-10	37189432	37839173	153315103	11	14187											
CENPC1	1060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	68358686	68358686	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	68358686	G	C	68358686	3	2	223	1	0	0	0	0	1	0	0	0	3231	1174	41	4	531	4	CENPC1	4	68358686	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	30519513	68358686	122795590	12	14188											
KIAA1109	84162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	123150305	123150305	+	Silent	SNP	T	T	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	123150305	T	C	123150305	2	2	223	1	0	0	0	0	0	0	0	1	8215	1596	56	3		3	KIAA1109	4	123150305	Silent	SNP	T	TCGA-B2-5641-01A-01D-1534-10	54791619	123150305	68003971	13	14189	186	2									
KIAA1109	84162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	123150307	123150307	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	123150307	C	A	123150307	4	1	223	1	0	0	0	0	0	1	0	0	8215	838	29	4	3044	4	KIAA1109	4	123150307	Nonsense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10	2	123150307	68003969	14	14190	186	2									
FNIP2	57600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	159789573	159789573	+	Silent	SNP	G	G	C	rs143166945	by1000genomes;alternate_allele	TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	159789573	G	C	159789573	2	2	223	1	0	0	0	0	0	0	0	1	5983	1045	37	4		4	FNIP2	4	159789573	Silent	SNP	G	TCGA-B2-5641-01A-01D-1534-10	36639266	159789573	31364703	15	14191											
SNX25	83891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	186244946	186244946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	186244946	G	A	186244946	3	1	223	1	0	0	0	0	1	0	0	0	14909	1174	41	2	1279	2	SNX25	4	186244946	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	26455373	186244946	4909330	16	14192											
SLC12A7	10723	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	1065466	1065466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	1065466	G	A	1065466	3	1	223	1	0	0	0	0	1	0	0	0	14401	1145	40	1	910	1	SLC12A7	5	1065466	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10		1065466	179849794	17	14193											
DDX4	54514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	55086409	55086409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	55086409	G	A	55086409	3	1	223	1	0	0	0	0	1	0	0	0	4362	1377	48	2	1277	2	DDX4	5	55086409	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	54020943	55086409	125828851	18	14194											
FBN2	2201	hgsc.bcm.edu;ucsc.edu	37	5	127647000	127647000	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	-	127647000	A	-	127647000	7	5	223	1	0	1	0	1	0	0	0	0	5710	333	12	0	3780	0	FBN2	5	127647000	Frame_Shift_Del	DEL	A	TCGA-B2-5641-01A-01D-1534-10	72560591	127647000	53268260	19	14195											
FAM13B	51306	broad.mit.edu;ucsc.edu	37	5	137278882	137278882	+	Silent	SNP	C	T	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	137278882	T	T	137278882	2	4	223	1	0	0	0	0	0	0	0	1	5457	622	22	2		2	FAM13B	5	137278882	Silent	SNP	C	TCGA-B2-5641-01A-01D-1534-10	9631882	137278882	43636378	20	14196											
KIF20A	10112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137519224	137519224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	137519224	A	G	137519224	3	3	223	1	0	0	0	0	1	0	0	0	8293	246	9	3	1123	3	KIF20A	5	137519224	Missense_Mutation	SNP	A	TCGA-B2-5641-01A-01D-1534-10	240342	137519224	43396036	21	14197											
PCDHB8	56128	broad.mit.edu	37	5	140559035	140559035	+	Missense_Mutation	SNP	G	A	A	rs149925643	alternate_allele	TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	140559035	A	A	140559035	3	1	223	1	0	0	0	0	1	0	0	0	11555	1145	40	1	1422	1	PCDHB8	5	140559035	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	3039811	140559035	40356225	22	14198											
BTNL3	10917	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	180432814	180432814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	180432814	C	T	180432814	3	4	223	1	0	0	0	0	1	0	0	0	1568	768	27	1	1373	1	BTNL3	5	180432814	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10	39873779	180432814	482446	23	14199											
DAXX	1616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33287883	33287883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	33287883	T	A	33287883	3	1	223	1	0	0	0	0	1	0	0	0	4245	1551	54	5	868	5	DAXX	6	33287883	Missense_Mutation	SNP	T	TCGA-B2-5641-01A-01D-1534-10		33287883	137827184	24	14200											
CLDN12	9069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	90042424	90042424	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	90042424	C	G	90042424	3	3	223	1	0	0	0	0	1	0	0	0	3476	565	20	4	436	4	CLDN12	7	90042424	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10		90042424	69096239	25	14201											
PUS7	54517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	105111238	105111238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	105111238	G	A	105111238	3	1	223	1	0	0	0	0	1	0	0	0	12846	1029	36	2	714	2	PUS7	7	105111238	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	15068814	105111238	54027425	26	14202											
CADPS2	93664	hgsc.bcm.edu;ucsc.edu	37	7	122114547	122114547	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	-	122114547	C	-	122114547	7	5	223	1	0	1	0	1	0	0	0	0	2573	507	18	0	2120	0	CADPS2	7	122114547	Frame_Shift_Del	DEL	C	TCGA-B2-5641-01A-01D-1534-10	17003309	122114547	37024116	27	14203											
DNAJB6	10049	hgsc.bcm.edu	37	7	157160099	157160100	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	GA	157160100	-	GA	157160099	7	5	223	1	0	1	1	0	0	0	0	0	4626	1348	47	0	282	0	DNAJB6	7	157160099	Frame_Shift_Ins	INS	-	TCGA-B2-5641-01A-01D-1534-10	35045552	157160099	1978564	28	14204											
PSD3	23362	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	18662289	18662289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	18662289	G	A	18662289	3	1	223	1	0	0	0	0	1	0	0	0	12658	1203	42	2	1437	2	PSD3	8	18662289	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10		18662289	127701733	29	14205											
ADAMDEC1	27299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	24242084	24242084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	24242084	T	C	24242084	3	2	223	1	0	0	0	0	1	0	0	0	254	1812	63	3	69	3	ADAMDEC1	8	24242084	Missense_Mutation	SNP	T	TCGA-B2-5641-01A-01D-1534-10	5579795	24242084	122121938	30	14206											
XKR4	114786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	56436104	56436104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	56436104	G	T	56436104	3	4	223	1	0	0	0	0	1	0	0	0	17445	1377	48	4	1281	4	XKR4	8	56436104	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	32194020	56436104	89927918	31	14207											
PKHD1L1	93035	broad.mit.edu	37	8	110445335	110445335	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	110445335	A	A	110445335	3	1	223	1	0	0	0	0	1	0	0	0	11979	1246	43	2	3340	2	PKHD1L1	8	110445335	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	54009231	110445335	35918687	32	14208											
TEK	7010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	27202840	27202840	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	27202840	C	G	27202840	3	3	223	1	0	0	0	0	1	0	0	0	15763	477	17	4	1982	4	TEK	9	27202840	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10		27202840	114010591	33	14209											
ABL1	25	broad.mit.edu	37	9	133589643	133589643	+	Translation_Start_Site	SNP	C	T	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	133589643	T	T	133589643	1	4	223	1	0	0	0	0	0	0	0	0	92	551	19	1		1	ABL1	9	133589643	Translation_Start_Site	SNP	C	TCGA-B2-5641-01A-01D-1534-10	106386803	133589643	7623788	34	14210											
YME1L1	10730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	27420850	27420850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	27420850	C	G	27420850	3	3	223	1	0	0	0	0	1	0	0	0	17499	681	24	4	1402	4	YME1L1	10	27420850	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10		27420850	108113897	35	14211											
ANKRD30A	91074	broad.mit.edu;hgsc.bcm.edu	37	10	37422855	37422855	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	37422855	T	G	37422855	3	3	223	1	0	0	0	0	1	0	0	0	658	1464	51	5	479	5	ANKRD30A	10	37422855	Missense_Mutation	SNP	T	TCGA-B2-5641-01A-01D-1534-10	10002005	37422855	98111892	36	14212											
BMS1	9790	broad.mit.edu	37	10	43288427	43288427	+	Silent	SNP	T	C	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	43288427	C	C	43288427	2	2	223	1	0	0	0	0	0	0	0	1	1472	1693	59	3		3	BMS1	10	43288427	Silent	SNP	T	TCGA-B2-5641-01A-01D-1534-10	5865572	43288427	92246320	37	14213											
LDB3	11155	broad.mit.edu	37	10	88476170	88476170	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	88476170	C	C	88476170	3	2	223	1	0	0	0	0	1	0	0	0	8704	1551	54	3	1688	3	LDB3	10	88476170	Missense_Mutation	SNP	T	TCGA-B2-5641-01A-01D-1534-10	45187743	88476170	47058577	38	14214											
SLK	9748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	105750469	105750469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	105750469	A	G	105750469	3	3	223	1	0	0	0	0	1	0	0	0	14761	15	1	3	193	3	SLK	10	105750469	Missense_Mutation	SNP	A	TCGA-B2-5641-01A-01D-1534-10	17274299	105750469	29784278	39	14215											
OR6A2	8590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6816240	6816240	+	Missense_Mutation	SNP	G	G	A	rs2741745		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	6816240	G	A	6816240	3	1	223	1	0	0	0	0	1	0	0	0	11193	1174	41	2	287	2	OR6A2	11	6816240	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10		6816240	128190276	40	14216											
BCL9L	283149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118774132	118774132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	118774132	C	A	118774132	3	1	223	1	0	0	0	0	1	0	0	0	1382	739	26	4	3957	4	BCL9L	11	118774132	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10	111957892	118774132	16232384	41	14217											
C12orf35	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32134405	32134405	+	Silent	SNP	T	T	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	32134405	T	C	32134405	2	2	223	1	0	0	0	0	0	0	0	1	1684	1490	52	3		3	C12orf35	12	32134405	Silent	SNP	T	TCGA-B2-5641-01A-01D-1534-10		32134405	101717490	42	14218											
OR9K2	441639	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55523606	55523606	+	Silent	SNP	A	A	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	55523606	A	G	55523606	2	3	223	1	0	0	0	0	0	0	0	1	11261	40	2	3		3	OR9K2	12	55523606	Silent	SNP	A	TCGA-B2-5641-01A-01D-1534-10	23389201	55523606	78328289	43	14219											
DNAJC14	85406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56216895	56216895	+	Silent	SNP	T	T	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	56216895	T	C	56216895	2	2	223	1	0	0	0	0	0	0	0	1	4635	1799	63	3		3	DNAJC14	12	56216895	Silent	SNP	T	TCGA-B2-5641-01A-01D-1534-10	693289	56216895	77635000	44	14220											
GNPTAB	79158	hgsc.bcm.edu;ucsc.edu	37	12	102158580	102158580	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	-	102158580	T	-	102158580	7	5	223	1	0	1	0	1	0	0	0	0	6552	1606	56	0	1691	0	GNPTAB	12	102158580	Frame_Shift_Del	DEL	T	TCGA-B2-5641-01A-01D-1534-10	45941685	102158580	31693315	45	14221											
BRCA2	675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32900684	32900684	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	32900684	G	C	32900684	3	2	223	1	0	0	0	0	1	0	0	0	1501	1174	41	4	587	4	BRCA2	13	32900684	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10		32900684	82269194	46	14222											
KIAA0564	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	42461433	42461433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	42461433	A	G	42461433	3	3	223	1	0	0	0	0	1	0	0	0	8192	101	4	3	5165	3	KIAA0564	13	42461433	Missense_Mutation	SNP	A	TCGA-B2-5641-01A-01D-1534-10	9560749	42461433	72708445	47	14223											
KIAA0586	9786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58954685	58954685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	58954685	T	G	58954685	3	3	223	1	0	0	0	0	1	0	0	0	8193	1841	64	5	3243	5	KIAA0586	14	58954685	Missense_Mutation	SNP	T	TCGA-B2-5641-01A-01D-1534-10		58954685	48394855	48	14224											
PROX2	283571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75329252	75329252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	75329252	A	C	75329252	3	2	223	1	0	0	0	0	1	0	0	0	12571	188	7	5	508	5	PROX2	14	75329252	Missense_Mutation	SNP	A	TCGA-B2-5641-01A-01D-1534-10	16374567	75329252	32020288	49	14225											
MYO5A	4644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52645836	52645836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	52645836	A	C	52645836	3	2	223	1	0	0	0	0	1	0	0	0	10085	101	4	5	2040	5	MYO5A	15	52645836	Missense_Mutation	SNP	A	TCGA-B2-5641-01A-01D-1534-10		52645836	49885556	50	14226											
MNS1	55329	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	56735643	56735643	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	56735643	A	C	56735643	4	2	223	1	0	0	0	0	0	1	0	0	9684	456	16	5	507	5	MNS1	15	56735643	Nonsense_Mutation	SNP	A	TCGA-B2-5641-01A-01D-1534-10	4089807	56735643	45795749	51	14227											
FUS	2521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31193930	31193930	+	Silent	SNP	G	G	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	31193930	G	A	31193930	2	1	223	1	0	0	0	0	0	0	0	1	6107	1103	39	1		1	FUS	16	31193930	Silent	SNP	G	TCGA-B2-5641-01A-01D-1534-10		31193930	59160823	52	14228	187	2									
FUS	2521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31193931	31193931	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	31193931	G	C	31193931	3	2	223	1	0	0	0	0	1	0	0	0	6107	1174	41	4	146	4	FUS	16	31193931	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	1	31193931	59160822	53	14229	187	2									
KATNB1	10300	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57785950	57785950	+	Silent	SNP	C	C	T	rs141576914	alternate_allele	TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	57785950	C	T	57785950	2	4	223	1	0	0	0	0	0	0	0	1	7994	668	24	2		2	KATNB1	16	57785950	Silent	SNP	C	TCGA-B2-5641-01A-01D-1534-10	26592019	57785950	32568803	54	14230											
SPNS3	201305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4389784	4389784	+	Silent	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	4389784	C	T	4389784	2	4	223	1	0	0	0	0	0	0	0	1	15088	805	28	2		2	SPNS3	17	4389784	Silent	SNP	C	TCGA-B2-5641-01A-01D-1534-10		4389784	76805426	55	14231											
TOM1L2	146691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	17810845	17810845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	17810845	T	A	17810845	3	1	223	1	0	0	0	0	1	0	0	0	16365	1797	62	5	1526	5	TOM1L2	17	17810845	Missense_Mutation	SNP	T	TCGA-B2-5641-01A-01D-1534-10	13421061	17810845	63384365	56	14232											
HOXB4	3214	broad.mit.edu;ucsc.edu	37	17	46654168	46654168	+	Silent	SNP	G	C	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	46654168	C	C	46654168	2	2	223	1	0	0	0	0	0	0	0	1	7310	1335	47	4		4	HOXB4	17	46654168	Silent	SNP	G	TCGA-B2-5641-01A-01D-1534-10	28843323	46654168	34541042	57	14233											
MED13	9969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	60140520	60140520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	60140520	C	T	60140520	3	4	223	1	0	0	0	0	1	0	0	0	9437	652	23	1	6431	1	MED13	17	60140520	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10	13486352	60140520	21054690	58	14234											
RTTN	25914	hgsc.bcm.edu;ucsc.edu	37	18	67871409	67871411	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	-	67871411	CAG	-	67871409	7	5	223	1	0	1	0	1	0	0	0	0	13750	835	29	0	6558	0	RTTN	18	67871409	In_Frame_Del	DEL	CAG	TCGA-B2-5641-01A-01D-1534-10		67871409	10205839	59	14235	188	2									
RTTN	25914	hgsc.bcm.edu	37	18	67871413	67871413	+	Silent	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	67871413	C	T	67871413	2	4	223	1	0	0	0	0	0	0	0	1	13750	680	24	2		2	RTTN	18	67871413	Silent	SNP	C	TCGA-B2-5641-01A-01D-1534-10	4	67871413	10205835	60	14236	188	2									
CYB5A	1528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	71930704	71930704	+	Silent	SNP	A	A	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	71930704	A	G	71930704	2	3	223	1	0	0	0	0	0	0	0	1	4124	146	6	3		3	CYB5A	18	71930704	Silent	SNP	A	TCGA-B2-5641-01A-01D-1534-10	4059291	71930704	6146544	61	14237											
PRR22	163154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	5784427	5784427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	5784427	G	T	5784427	3	4	223	1	0	0	0	0	1	0	0	0	12603	1232	43	4	1122	4	PRR22	19	5784427	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10		5784427	53344556	62	14238											
SYDE1	85360	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15223181	15223181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	15223181	C	A	15223181	3	1	223	1	0	0	0	0	1	0	0	0	15447	594	21	4	1629	4	SYDE1	19	15223181	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10	9438754	15223181	43905802	63	14239											
ZNF714	148206	broad.mit.edu;hgsc.bcm.edu	37	19	21300510	21300510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	21300510	A	G	21300510	3	3	223	1	0	0	0	0	1	0	0	0	18130	14	1	3	1050	3	ZNF714	19	21300510	Missense_Mutation	SNP	A	TCGA-B2-5641-01A-01D-1534-10	6077329	21300510	37828473	64	14240											
ZNF180	7733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45004270	45004270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	45004270	G	A	45004270	3	1	223	1	0	0	0	0	1	0	0	0	17760	1145	40	1	2075	1	ZNF180	19	45004270	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	23703760	45004270	14124713	65	14241											
PPFIA3	8541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49641602	49641602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	49641602	C	T	49641602	3	4	223	1	0	0	0	0	1	0	0	0	12318	739	26	2	2052	2	PPFIA3	19	49641602	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10	4637332	49641602	9487381	66	14242											
MACROD2	140733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	15967710	15967710	+	Splice_Site	SNP	G	G	C	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	C	15967710	G	C	15967710	5	2	223	1	0	0	0	0	0	0	1	0	9153	956	33	4	1118	4	MACROD2	20	15967710	Splice_Site	SNP	G	TCGA-B2-5641-01A-01D-1534-10		15967710	47057810	67	14243											
LBP	3929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	36978015	36978015	+	Silent	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	36978015	C	T	36978015	2	4	223	1	0	0	0	0	0	0	0	1	8658	639	23	1		1	LBP	20	36978015	Silent	SNP	C	TCGA-B2-5641-01A-01D-1534-10	21010305	36978015	26047505	68	14244											
EFCAB6	64800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	44004465	44004465	+	Missense_Mutation	SNP	C	C	A	rs55698170	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	A	44004465	C	A	44004465	3	1	223	1	0	0	0	0	1	0	0	0	4941	884	31	4	1971	4	EFCAB6	22	44004465	Missense_Mutation	SNP	C	TCGA-B2-5641-01A-01D-1534-10		44004465	7300101	69	14245											
KDM5C	8242	hgsc.bcm.edu;ucsc.edu	37	X	53247129	53247135	+	Frame_Shift_Del	DEL	CCACCTT	CCACCTT	-	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	CCACCTT	CCACCTT	CCACCTT	-	CCACCTT	CCACCTT	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	-	53247135	CCACCTT	-	53247129	7	5	223	1	0	1	0	1	0	0	0	0	8142	507	18	0	4501	0	KDM5C	23	53247129	Frame_Shift_Del	DEL	CCACCTT	TCGA-B2-5641-01A-01D-1534-10		53247129	102023431	70	14246			1	24		2	2	15	N	CCACCTT_C	3.165658e-05
KDM5C	8242	ucsc.edu	37	X	53247143	53247143	+	Silent	SNP	C	C	G	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	C	G	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	G	53247143	C	G	53247143	2	3	223	1	0	0	0	0	0	0	0	1	8142	581	21	4		4	KDM5C	23	53247143	Silent	SNP	C	TCGA-B2-5641-01A-01D-1534-10	14	53247143	102023417	71	14247			1	24		2	2	15	N	CCACCTT_C	3.165658e-05
PHF8	23133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	54044120	54044120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	54044120	G	T	54044120	3	4	223	1	0	0	0	0	1	0	0	0	11847	1029	36	4	2888	4	PHF8	23	54044120	Missense_Mutation	SNP	G	TCGA-B2-5641-01A-01D-1534-10	796977	54044120	101226440	72	14248											
IGSF1	3547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	130410026	130410026	+	Silent	SNP	C	C	T	novel		TCGA-B2-5641-01A-01D-1534-10	TCGA-B2-5641-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b49d3bb5-74fe-4ff0-9b47-131bcb455855	d7319ab4-8498-4599-aad8-54ab2174c541	T	130410026	C	T	130410026	2	4	223	1	0	0	0	0	0	0	0	1	7603	680	24	2		2	IGSF1	23	130410026	Silent	SNP	C	TCGA-B2-5641-01A-01D-1534-10	76365906	130410026	24860534	73	14249											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu	37	1	79402059	79402059	+	Silent	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	79402059	T	C	79402059	2	2	224	1	0	0	0	0	0	0	0	1	5086	1722	60	3		3	ELTD1	1	79402059	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08		79402059	169848562	1	14250											
AMY2B	280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	104122036	104122036	+	Missense_Mutation	SNP	G	G	A	rs143243690		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	104122036	G	A	104122036	3	1	224	1	0	0	0	0	1	0	0	0	595	1145	40	1	1488	1	AMY2B	1	104122036	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	24719977	104122036	145128585	2	14251											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113616063	113616063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	113616063	A	T	113616063	3	4	224	1	0	0	0	0	1	0	0	0	8952	188	7	5	37	5	LRIG2	1	113616063	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	9494027	113616063	135634558	3	14252											
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155899153	155899153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	155899153	C	G	155899153	3	3	224	1	0	0	0	0	1	0	0	0	8206	565	20	4	1490	4	KIAA0907	1	155899153	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	42283090	155899153	93351468	4	14253											
USF1	7391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161011569	161011569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	161011569	T	C	161011569	3	2	224	1	0	0	0	0	1	0	0	0	17044	1696	59	3	612	3	USF1	1	161011569	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	5112416	161011569	88239052	5	14254											
TMCC2	9911	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	205238546	205238546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	205238546	G	T	205238546	3	4	224	1	0	0	0	0	1	0	0	0	16005	1145	40	4	1226	4	TMCC2	1	205238546	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	44226977	205238546	44012075	6	14255											
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48050458	48050458	+	Silent	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	48050458	T	G	48050458	2	3	224	1	0	0	0	0	0	0	0	1	5734	1567	55	5		5	FBXO11	2	48050458	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08		48050458	195148915	7	14256											
STON1	11037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48808956	48808956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	48808956	A	G	48808956	3	3	224	1	0	0	0	0	1	0	0	0	15328	304	11	3	1186	3	STON1	2	48808956	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	758498	48808956	194390417	8	14257											
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86371415	86371415	+	Silent	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	86371415	T	G	86371415	2	3	224	1	0	0	0	0	0	0	0	1	7725	1770	62	5		5	IMMT	2	86371415	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	37562459	86371415	156827958	9	14258											
VWC2L	402117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215440518	215440518	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	215440518	G	T	215440518	4	4	224	1	0	0	0	0	0	1	0	0	17256	1291	45	4	653	4	VWC2L	2	215440518	Nonsense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	129069103	215440518	27758855	10	14259											
GIGYF2	26058	broad.mit.edu;bcgsc.ca	37	2	233681733	233681734	+	Frame_Shift_Ins	INS	-	-	AGGAAAC	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	AGGAAAC	233681734	-	AGGAAAC	233681733	7	5	224	1	0	1	1	0	0	0	0	0	6385	233	9	0	2501	0	GIGYF2	2	233681733	Frame_Shift_Ins	INS	-	TCGA-B3-3925-01A-01D-1458-08	18241215	233681733	9517640	11	14260			1	25		2	2	12	N	T_-	2.913702e-05
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233681744	233681744	+	Splice_Site	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	233681744	T	A	233681744	5	1	224	1	0	0	0	0	0	0	1	0	6385	1652	57	5	2512	5	GIGYF2	2	233681744	Splice_Site	SNP	T	TCGA-B3-3925-01A-01D-1458-08	11	233681744	9517629	12	14261			1	25		2	2	12	N	T_-	2.913702e-05
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9798226	9798227	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	AA	9798227	-	AA	9798226	7	5	224	1	0	1	1	0	0	0	0	0	10852	477	17	0	837	0	OGG1	3	9798226	Frame_Shift_Ins	INS	-	TCGA-B3-3925-01A-01D-1458-08		9798226	188224204	13	14262	189	2									
OGG1	4968	hgsc.bcm.edu;bcgsc.ca	37	3	9798228	9798228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	9798228	T	A	9798228	3	1	224	1	0	0	0	0	1	0	0	0	10852	1493	52	5	839	5	OGG1	3	9798228	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	2	9798228	188224202	14	14263	189	2									
RAF1	5894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12633229	12633229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	12633229	T	A	12633229	3	1	224	1	0	0	0	0	1	0	0	0	13015	1579	55	5	803	5	RAF1	3	12633229	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	2835001	12633229	185389201	15	14264											
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	25646332	25646332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	25646332	C	A	25646332	3	1	224	1	0	0	0	0	1	0	0	0	16378	913	32	4	488	4	TOP2B	3	25646332	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	13013103	25646332	172376098	16	14265											
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38835251	38835251	+	Missense_Mutation	SNP	G	G	A	rs140609990		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	38835251	G	A	38835251	3	1	224	1	0	0	0	0	1	0	0	0	13925	1116	39	1	5727	1	SCN10A	3	38835251	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	13188919	38835251	159187179	17	14266											
MST1	4485	hgsc.bcm.edu	37	3	49725253	49725253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	49725253	C	T	49725253	3	4	224	1	0	0	0	0	1	0	0	0	9897	652	23	1	2073	1	MST1	3	49725253	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	10890002	49725253	148297177	18	14267											
ATP6V1A	523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113503595	113503595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	113503595	C	G	113503595	3	3	224	1	0	0	0	0	1	0	0	0	1177	893	31	4	493	4	ATP6V1A	3	113503595	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	63778342	113503595	84518835	19	14268											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71659564	71659564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	71659564	A	G	71659564	3	3	224	1	0	0	0	0	1	0	0	0	13753	275	10	3	1893	3	RUFY3	4	71659564	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08		71659564	119494712	20	14269											
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76532405	76532405	+	Silent	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	76532405	T	C	76532405	2	2	224	1	0	0	0	0	0	0	0	1	3156	1548	54	3		3	CDKL2	4	76532405	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	4872841	76532405	114621871	21	14270											
TIGD2	166815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	90035227	90035227	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	90035227	G	T	90035227	4	4	224	1	0	0	0	0	0	1	0	0	15908	1291	45	4	1104	4	TIGD2	4	90035227	Nonsense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	13502822	90035227	101119049	22	14271											
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	138450855	138450855	+	Silent	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	138450855	G	A	138450855	2	1	224	1	0	0	0	0	0	0	0	1	11520	1368	48	2		2	PCDH18	4	138450855	Silent	SNP	G	TCGA-B3-3925-01A-01D-1458-08	48415628	138450855	52703421	23	14272											
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146041306	146041306	+	Splice_Site	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	146041306	G	A	146041306	5	1	224	1	0	0	0	0	0	0	1	0	64	1275	44	2	1183	2	ABCE1	4	146041306	Splice_Site	SNP	G	TCGA-B3-3925-01A-01D-1458-08	7590451	146041306	45112970	24	14273											
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30857025	30857025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	30857025	G	A	30857025	3	1	224	1	0	0	0	0	1	0	0	0	4338	1261	44	2	245	2	DDR1	6	30857025	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		30857025	140258042	25	14274											
CD2AP	23607	bcgsc.ca	37	6	47591945	47591953	+	In_Frame_Del	DEL	AGCTGTCCT	AGCTGTCCT	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	AGCTGTCCT	AGCTGTCCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	-	47591953	AGCTGTCCT	-	47591945	7	5	224	1	0	1	0	1	0	0	0	0	2996	69	3	0	1972	0	CD2AP	6	47591945	In_Frame_Del	DEL	AGCTGTCCT	TCGA-B3-3925-01A-01D-1458-08	16734920	47591945	123523122	26	14275											
PREP	5550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	105825364	105825364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	105825364	C	G	105825364	3	3	224	1	0	0	0	0	1	0	0	0	12484	478	17	4	2033	4	PREP	6	105825364	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	58233419	105825364	65289703	27	14276											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117622147	117622147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	117622147	T	G	117622147	3	3	224	1	0	0	0	0	1	0	0	0	13544	1838	64	5	328	5	ROS1	6	117622147	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	11796783	117622147	53492920	28	14277											
RAET1L	154064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150342042	150342042	+	Silent	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	150342042	T	A	150342042	2	1	224	1	0	0	0	0	0	0	0	1	13014	1565	54	5		5	RAET1L	6	150342042	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	32719895	150342042	20773025	29	14278											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100383746	100383746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	100383746	G	T	100383746	3	4	224	1	0	0	0	0	1	0	0	0	17525	971	34	4	7103	4	ZAN	7	100383746	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		100383746	58754917	30	14279											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100692247	100692247	+	Silent	SNP	G	G	A	rs200175178		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	100692247	G	A	100692247	2	1	224	1	0	0	0	0	0	0	0	1	9981	1103	39	1		1	MUC17	7	100692247	Silent	SNP	G	TCGA-B3-3925-01A-01D-1458-08	308501	100692247	58446416	31	14280											
ASB15	142685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123264837	123264837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	123264837	C	A	123264837	3	1	224	1	0	0	0	0	1	0	0	0	1019	564	20	4	684	4	ASB15	7	123264837	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	22572590	123264837	35873826	32	14281											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141800677	141800677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	141800677	T	G	141800677	3	3	224	1	0	0	0	0	1	0	0	0	9548	1461	51	5	5436	5	MGAM	7	141800677	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	18535840	141800677	17337986	33	14282											
BMP1	649	broad.mit.edu;bcgsc.ca	37	8	22022973	22022973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	22022973	C	A	22022973	3	1	224	1	0	0	0	0	1	0	0	0	1456	855	30	4	57	4	BMP1	8	22022973	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08		22022973	124341049	34	14283											
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121587444	121587444	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	121587444	G	A	121587444	4	1	224	1	0	0	0	0	0	1	0	0	14885	1386	48	2	614	2	SNTB1	8	121587444	Nonsense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	99564471	121587444	24776578	35	14284											
ZFP41	286128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144332048	144332048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	144332048	C	T	144332048	3	4	224	1	0	0	0	0	1	0	0	0	17661	652	23	1	37	1	ZFP41	8	144332048	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	22744604	144332048	2031974	36	14285											
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	98741324	98741326	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	-	98741326	TTT	-	98741324	7	5	224	1	0	1	0	1	0	0	0	0	1591	1596	56	0	179	0	C10orf12	10	98741324	In_Frame_Del	DEL	TTT	TCGA-B3-3925-01A-01D-1458-08		98741324	36793423	37	14286											
PYROXD2	84795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	100167696	100167696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	100167696	A	G	100167696	3	3	224	1	0	0	0	0	1	0	0	0	12880	333	12	3	1595	3	PYROXD2	10	100167696	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	1426372	100167696	35367051	38	14287											
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105793764	105793764	+	Silent	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	105793764	A	G	105793764	2	3	224	1	0	0	0	0	0	0	0	1	3676	175	7	3		3	COL17A1	10	105793764	Silent	SNP	A	TCGA-B3-3925-01A-01D-1458-08	5626068	105793764	29740983	39	14288											
PTPRE	5791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129859261	129859261	+	Silent	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	129859261	C	A	129859261	2	1	224	1	0	0	0	0	0	0	0	1	12813	816	29	4		4	PTPRE	10	129859261	Silent	SNP	C	TCGA-B3-3925-01A-01D-1458-08	24065497	129859261	5675486	40	14289											
PAOX	196743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135193909	135193909	+	Silent	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	135193909	C	T	135193909	2	4	224	1	0	0	0	0	0	0	0	1	11430	697	25	2		2	PAOX	10	135193909	Silent	SNP	C	TCGA-B3-3925-01A-01D-1458-08	5334648	135193909	340838	41	14290											
HPX	3263	ucsc.edu;bcgsc.ca	37	11	6453151	6453151	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	6453151	G	C	6453151	3	2	224	1	0	0	0	0	1	0	0	0	7353	1203	42	4	468	4	HPX	11	6453151	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		6453151	128553365	42	14291											
ARHGAP32	9743	hgsc.bcm.edu;bcgsc.ca	37	11	128839901	128839901	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	-	128839901	T	-	128839901	7	5	224	1	0	1	0	1	0	0	0	0	881	1725	60	0	1102	0	ARHGAP32	11	128839901	Frame_Shift_Del	DEL	T	TCGA-B3-3925-01A-01D-1458-08	122386750	128839901	6166615	43	14292											
GYS2	2998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21757442	21757442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	21757442	G	T	21757442	3	4	224	1	0	0	0	0	1	0	0	0	6920	1020	36	4	2090	4	GYS2	12	21757442	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		21757442	112094453	44	14293											
ALG10	84920	ucsc.edu	37	12	34179835	34179835	+	Silent	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	34179835	A	G	34179835	2	3	224	1	0	0	0	0	0	0	0	1	511	11	1	3		3	ALG10	12	34179835	Silent	SNP	A	TCGA-B3-3925-01A-01D-1458-08	12422393	34179835	99672060	45	14294											
TSFM	10102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	58177005	58177005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	58177005	C	T	58177005	3	4	224	1	0	0	0	0	1	0	0	0	16627	478	17	2	176	2	TSFM	12	58177005	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	23997170	58177005	75674890	46	14295											
CCDC63	160762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111321841	111321841	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	111321841	G	C	111321841	3	2	224	1	0	0	0	0	1	0	0	0	2836	991	35	4	887	4	CCDC63	12	111321841	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	53144836	111321841	22530054	47	14296											
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121746455	121746458	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	-	121746458	TTCT	-	121746455	7	5	224	1	0	1	0	1	0	0	0	0	605	1725	60	0	175	0	ANAPC5	12	121746455	Frame_Shift_Del	DEL	TTCT	TCGA-B3-3925-01A-01D-1458-08	10424614	121746455	12105440	48	14297											
KDM2B	84678	broad.mit.edu	37	12	121880611	121880611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	121880611	C	T	121880611	3	4	224	1	0	0	0	0	1	0	0	0	8132	768	27	1	1449	1	KDM2B	12	121880611	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	134156	121880611	11971284	49	14298											
KNTC1	9735	hgsc.bcm.edu	37	12	123073262	123073262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	123073262	T	C	123073262	3	2	224	1	0	0	0	0	1	0	0	0	8435	1493	52	3	4052	3	KNTC1	12	123073262	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	1192651	123073262	10778633	50	14299											
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	38154716	38154716	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	38154716	T	G	38154716	3	3	224	1	0	0	0	0	1	0	0	0	12266	1841	64	5	1051	5	POSTN	13	38154716	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08		38154716	77015162	51	14300											
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	61987658	61987658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	61987658	A	G	61987658	3	3	224	1	0	0	0	0	1	0	0	0	11522	43	2	3	2285	3	PCDH20	13	61987658	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	23832942	61987658	53182220	52	14301											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23886422	23886422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	23886422	C	T	23886422	3	4	224	1	0	0	0	0	1	0	0	0	10046	768	27	1	1384	1	MYH7	14	23886422	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08		23886422	83463118	53	14302											
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40594160	40594160	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	40594160	T	A	40594160	4	1	224	1	0	0	0	0	0	1	0	0	12035	1821	63	5	3081	5	PLCB2	15	40594160	Nonsense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08		40594160	61937232	54	14303											
C15orf52	388115	broad.mit.edu	37	15	40633079	40633079	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	-	40633079	A	-	40633079	7	5	224	1	0	1	0	1	0	0	0	0	1802	246	9	0	1574	0	C15orf52	15	40633079	Frame_Shift_Del	DEL	A	TCGA-B3-3925-01A-01D-1458-08	38919	40633079	61898313	55	14304											
GLDN	342035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51693835	51693835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	51693835	G	A	51693835	3	1	224	1	0	0	0	0	1	0	0	0	6441	1203	42	2	1107	2	GLDN	15	51693835	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	11060756	51693835	50837557	56	14305											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62221845	62221845	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	62221845	C	G	62221845	3	3	224	1	0	0	0	0	1	0	0	0	17203	796	28	4	5288	4	VPS13C	15	62221845	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	10528010	62221845	40309547	57	14306											
CALML4	91860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68497600	68497600	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	68497600	T	G	68497600	3	3	224	1	0	0	0	0	1	0	0	0	2590	1580	55	5	495	5	CALML4	15	68497600	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	6275755	68497600	34033792	58	14307											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72192125	72192125	+	Silent	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	72192125	T	G	72192125	2	3	224	1	0	0	0	0	0	0	0	1	10091	1617	56	5		5	MYO9A	15	72192125	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	3694525	72192125	30339267	59	14308											
ADAMTSL3	57188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	84581896	84581896	+	Nonsense_Mutation	SNP	C	C	T	rs202011681	alternate_allele	TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	84581896	C	T	84581896	4	4	224	1	0	0	0	0	0	1	0	0	276	711	25	2	1811	2	ADAMTSL3	15	84581896	Nonsense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	12389771	84581896	17949496	60	14309											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu	37	16	18844471	18844471	+	Silent	SNP	G	G	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	18844471	G	A	18844471	2	1	224	1	0	0	0	0	0	0	0	1	14808	1165	41	2		2	SMG1	16	18844471	Silent	SNP	G	TCGA-B3-3925-01A-01D-1458-08		18844471	71510282	61	14310											
CORO1A	11151	ucsc.edu	37	16	30198806	30198806	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	30198806	T	G	30198806	3	3	224	1	0	0	0	0	1	0	0	0	3755	1696	59	5	758	5	CORO1A	16	30198806	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	11354335	30198806	60155947	62	14311											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30732089	30732089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	30732089	C	A	30732089	3	1	224	1	0	0	0	0	1	0	0	0	15147	623	22	4	3113	4	SRCAP	16	30732089	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	533283	30732089	59622664	63	14312											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3953114	3953114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	3953114	C	T	3953114	3	4	224	1	0	0	0	0	1	0	0	0	18267	623	22	2	3058	2	ZZEF1	17	3953114	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08		3953114	77242096	64	14313											
RAB34	83871	broad.mit.edu	37	17	27045260	27045260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	27045260	A	C	27045260	3	2	224	1	0	0	0	0	1	0	0	0	12937	131	5	5	1035	5	RAB34	17	27045260	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	23092146	27045260	54149950	65	14314											
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74283337	74283337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	74283337	T	A	74283337	3	1	224	1	0	0	0	0	1	0	0	0	12893	1812	63	5	1594	5	QRICH2	17	74283337	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	47238077	74283337	6911873	66	14315											
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80888515	80888515	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	80888515	G	C	80888515	3	2	224	1	0	0	0	0	1	0	0	0	15645	1291	45	4	3239	4	TBCD	17	80888515	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	6605178	80888515	306695	67	14316											
HDHD2	84064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44662721	44662721	+	Silent	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	44662721	T	C	44662721	2	2	224	1	0	0	0	0	0	0	0	1	7030	1606	56	3		3	HDHD2	18	44662721	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08		44662721	33414527	68	14317											
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47500737	47500737	+	Silent	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	47500737	C	T	47500737	2	4	224	1	0	0	0	0	0	0	0	1	10086	610	22	2		2	MYO5B	18	47500737	Silent	SNP	C	TCGA-B3-3925-01A-01D-1458-08	2838016	47500737	30576511	69	14318											
RAB27B	5874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	52555227	52555230	+	Frame_Shift_Del	DEL	CCAA	CCAA	-	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	CCAA	CCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	-	52555230	CCAA	-	52555227	7	5	224	1	0	1	0	1	0	0	0	0	12928	753	26	0	359	0	RAB27B	18	52555227	Frame_Shift_Del	DEL	CCAA	TCGA-B3-3925-01A-01D-1458-08	5054490	52555227	25522021	70	14319											
RFX2	5990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6013026	6013026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	6013026	C	T	6013026	3	4	224	1	0	0	0	0	1	0	0	0	13276	710	25	2	1345	2	RFX2	19	6013026	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08		6013026	53115957	71	14320											
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40486339	40486339	+	Silent	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	40486339	T	C	40486339	2	2	224	1	0	0	0	0	0	0	0	1	12699	1567	55	3		3	PSMC4	19	40486339	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	34473313	40486339	18642644	72	14321											
GIPR	2696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46184876	46184876	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	46184876	C	G	46184876	3	3	224	1	0	0	0	0	1	0	0	0	6402	767	27	4	1213	4	GIPR	19	46184876	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	5698537	46184876	12944107	73	14322											
FGF21	26291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49261265	49261265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	49261265	C	A	49261265	3	1	224	1	0	0	0	0	1	0	0	0	5857	594	21	4	428	4	FGF21	19	49261265	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	3076389	49261265	9867718	74	14323											
SIGLEC9	27180	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	51633170	51633170	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	51633170	C	G	51633170	3	3	224	1	0	0	0	0	1	0	0	0	14328	710	25	4	1252	4	SIGLEC9	19	51633170	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	2371905	51633170	7495813	75	14324											
CD40	958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44757638	44757638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	44757638	G	C	44757638	3	2	224	1	0	0	0	0	1	0	0	0	3017	1174	41	4	827	4	CD40	20	44757638	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		44757638	18267882	76	14325											
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47887763	47887763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	47887763	T	C	47887763	3	2	224	1	0	0	0	0	1	0	0	0	18217	1522	53	3	5218	3	ZNFX1	20	47887763	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	3130125	47887763	15137757	77	14326											
GNAZ	2781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	23438484	23438484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	23438484	A	G	23438484	3	3	224	1	0	0	0	0	1	0	0	0	6521	275	10	3	604	3	GNAZ	22	23438484	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08		23438484	27866082	78	14327											
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24447425	24447425	+	Silent	SNP	T	T	A	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	A	24447425	T	A	24447425	2	1	224	1	0	0	0	0	0	0	0	1	2530	1771	62	5		5	CABIN1	22	24447425	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	1008941	24447425	26857141	79	14328											
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32193641	32193641	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	32193641	A	T	32193641	4	4	224	1	0	0	0	0	0	1	0	0	4444	363	13	5	869	5	DEPDC5	22	32193641	Nonsense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	7746216	32193641	19110925	80	14329											
SOX10	6663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38374016	38374016	+	Silent	SNP	C	C	T	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	T	38374016	C	T	38374016	2	4	224	1	0	0	0	0	0	0	0	1	14954	680	24	2		2	SOX10	22	38374016	Silent	SNP	C	TCGA-B3-3925-01A-01D-1458-08	6180375	38374016	12930550	81	14330											
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	3238719	3238719	+	Silent	SNP	A	A	G	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	G	3238719	A	G	3238719	2	3	224	1	0	0	0	0	0	0	0	1	10010	388	14	3		3	MXRA5	23	3238719	Silent	SNP	A	TCGA-B3-3925-01A-01D-1458-08		3238719	152031841	82	14331											
CTPS2	56474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	16685795	16685795	+	Silent	SNP	A	A	C	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	C	16685795	A	C	16685795	2	2	224	1	0	0	0	0	0	0	0	1	4025	349	13	5		5	CTPS2	23	16685795	Silent	SNP	A	TCGA-B3-3925-01A-01D-1458-08	13447076	16685795	138584765	83	14332											
VCAM1	7412	hgsc.bcm.edu	37	1	101186217	101186217	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	101186217	C	G	101186217	3	3	225	1	0	0	0	0	1	0	0	0	17149	855	30	4	256	4	VCAM1	1	101186217	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		101186217	148064404	1	14333											
PLA2G4A	5321	hgsc.bcm.edu	37	1	186916022	186916022	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	186916022	C	G	186916022	3	3	225	1	0	0	0	0	1	0	0	0	12008	855	30	4	1235	4	PLA2G4A	1	186916022	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08	85729805	186916022	62334599	2	14334											
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29432730	29432730	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	29432730	C	G	29432730	3	3	225	1	0	0	0	0	1	0	0	0	525	913	32	4	1124	4	ALK	2	29432730	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		29432730	213766643	3	14335											
LRP1B	53353	hgsc.bcm.edu	37	2	141032014	141032014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	C	141032014	T	C	141032014	3	2	225	1	0	0	0	0	1	0	0	0	8962	1667	58	3	706	3	LRP1B	2	141032014	Missense_Mutation	SNP	T	TCGA-B3-3926-01A-01D-1252-08	111599284	141032014	102167359	4	14336											
TTN	7273	ucsc.edu;bcgsc.ca	37	2	179476553	179476553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	179476553	G	T	179476553	3	4	225	1	0	0	0	0	1	0	0	0	16747	971	34	4	57590	4	TTN	2	179476553	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08	38444539	179476553	63722820	5	14337											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129284750	129284750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	A	129284750	C	A	129284750	3	1	225	1	0	0	0	0	1	0	0	0	12134	680	24	4	1527	4	PLXND1	3	129284750	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		129284750	68737680	6	14338											
SLC2A2	6514	broad.mit.edu	37	3	170727776	170727776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	170727776	G	T	170727776	3	4	225	1	0	0	0	0	1	0	0	0	14557	971	34	4	1139	4	SLC2A2	3	170727776	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08	41443026	170727776	27294654	7	14339											
ELF2	1998	hgsc.bcm.edu	37	4	139980523	139980523	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	C	139980523	G	C	139980523	3	2	225	1	0	0	0	0	1	0	0	0	5056	1386	48	4	389	4	ELF2	4	139980523	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08		139980523	51173753	8	14340											
POU4F3	5459	broad.mit.edu	37	5	145719656	145719656	+	Silent	SNP	G	G	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	145719656	G	T	145719656	2	4	225	1	0	0	0	0	0	0	0	1	12287	1074	38	4		4	POU4F3	5	145719656	Silent	SNP	G	TCGA-B3-3926-01A-01D-1252-08		145719656	35195604	9	14341											
RBAK	57786	hgsc.bcm.edu;ucsc.edu	37	7	5105227	5105227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	5105227	C	T	5105227	3	4	225	1	0	0	0	0	1	0	0	0	13113	913	32	2	2154	2	RBAK	7	5105227	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		5105227	154033436	10	14342											
EPDR1	54749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	37960767	37960767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	37960767	G	T	37960767	3	4	225	1	0	0	0	0	1	0	0	0	5165	1145	40	4	588	4	EPDR1	7	37960767	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08	32855540	37960767	121177896	11	14343											
SRRT	51593	broad.mit.edu	37	7	100485034	100485034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	A	100485034	G	A	100485034	3	1	225	1	0	0	0	0	1	0	0	0	15184	1087	38	1	2127	1	SRRT	7	100485034	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08	62524267	100485034	58653629	12	14344											
UBAP2	55833	hgsc.bcm.edu	37	9	33960823	33960823	+	Splice_Site	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	33960823	C	G	33960823	5	3	225	1	0	0	0	0	0	0	1	0	16849	492	17	4	2640	4	UBAP2	9	33960823	Splice_Site	SNP	C	TCGA-B3-3926-01A-01D-1252-08		33960823	107252608	13	14345											
ITPRIP	85450	ucsc.edu	37	10	106075205	106075205	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	C	106075205	A	C	106075205	3	2	225	1	0	0	0	0	1	0	0	0	7930	159	6	5	1042	5	ITPRIP	10	106075205	Missense_Mutation	SNP	A	TCGA-B3-3926-01A-01D-1252-08		106075205	29459542	14	14346											
MRGPRX4	117196	ucsc.edu;bcgsc.ca	37	11	18195248	18195248	+	Silent	SNP	C	C	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	18195248	C	T	18195248	2	4	225	1	0	0	0	0	0	0	0	1	9776	680	24	2		2	MRGPRX4	11	18195248	Silent	SNP	C	TCGA-B3-3926-01A-01D-1252-08		18195248	116811268	15	14347											
C1QTNF4	114900	hgsc.bcm.edu	37	11	47611940	47611940	+	Missense_Mutation	SNP	C	C	G	rs142453721		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	47611940	C	G	47611940	3	3	225	1	0	0	0	0	1	0	0	0	1967	564	20	4	570	4	C1QTNF4	11	47611940	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08	29416692	47611940	87394576	16	14348											
NAALAD2	10003	broad.mit.edu	37	11	89911214	89911214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	89911214	A	T	89911214	3	4	225	1	0	0	0	0	1	0	0	0	10135	43	2	5	1849	5	NAALAD2	11	89911214	Missense_Mutation	SNP	A	TCGA-B3-3926-01A-01D-1252-08	42299274	89911214	45095302	17	14349											
MLL2	8085	broad.mit.edu	37	12	49445198	49445198	+	Silent	SNP	A	A	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	49445198	A	G	49445198	2	3	225	1	0	0	0	0	0	0	0	1	9628	175	7	3		3	MLL2	12	49445198	Silent	SNP	A	TCGA-B3-3926-01A-01D-1252-08		49445198	84406697	18	14350											
SLC46A3	283537	hgsc.bcm.edu	37	13	29278214	29278214	+	Silent	SNP	A	A	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	29278214	A	G	29278214	2	3	225	1	0	0	0	0	0	0	0	1	14659	59	3	3		3	SLC46A3	13	29278214	Silent	SNP	A	TCGA-B3-3926-01A-01D-1252-08		29278214	85891664	19	14351											
REC8	9985	ucsc.edu;bcgsc.ca	37	14	24646579	24646579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	C	24646579	G	C	24646579	3	2	225	1	0	0	0	0	1	0	0	0	13212	971	34	4	758	4	REC8	14	24646579	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08		24646579	82702961	20	14352											
SAV1	60485	hgsc.bcm.edu;broad.mit.edu	37	14	51132122	51132129	+	Frame_Shift_Del	DEL	CTAGACTT	CTAGACTT	-	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	CTAGACTT	CTAGACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	-	51132129	CTAGACTT	-	51132122	7	5	225	1	0	1	0	1	0	0	0	0	13869	797	28	0	857	0	SAV1	14	51132122	Frame_Shift_Del	DEL	CTAGACTT	TCGA-B3-3926-01A-01D-1252-08	26485543	51132122	56217418	21	14353											
CBFA2T3	863	hgsc.bcm.edu	37	16	88943542	88943542	+	Missense_Mutation	SNP	C	C	T	rs200760802		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	88943542	C	T	88943542	3	4	225	1	0	0	0	0	1	0	0	0	2700	536	19	1	161	1	CBFA2T3	16	88943542	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		88943542	1411211	22	14354											
VPS53	55275	broad.mit.edu	37	17	465803	465803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	A	465803	G	A	465803	3	1	225	1	0	0	0	0	1	0	0	0	17227	1261	44	2	1053	2	VPS53	17	465803	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08		465803	80729407	23	14355											
KRTAP1-5	83895	hgsc.bcm.edu	37	17	39183062	39183062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	C	39183062	T	C	39183062	3	2	225	1	0	0	0	0	1	0	0	0	8511	1406	49	3	182	3	KRTAP1-5	17	39183062	Missense_Mutation	SNP	T	TCGA-B3-3926-01A-01D-1252-08	38717259	39183062	42012148	24	14356											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	60766323	60766323	+	Splice_Site	SNP	T	T	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	C	60766323	T	C	60766323	5	2	225	1	0	0	0	0	0	0	1	0	9765	1652	57	3	3426	3	MRC2	17	60766323	Splice_Site	SNP	T	TCGA-B3-3926-01A-01D-1252-08	21583261	60766323	20428887	25	14357											
NOL4	8715	hgsc.bcm.edu	37	18	31709939	31709939	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	31709939	C	G	31709939	3	3	225	1	0	0	0	0	1	0	0	0	10531	478	17	4	1646	4	NOL4	18	31709939	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		31709939	46367309	26	14358											
AMH	268	hgsc.bcm.edu	37	19	2251512	2251512	+	Silent	SNP	T	T	A	rs7252789		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	A	2251512	T	A	2251512	2	1	225	1	0	0	0	0	0	0	0	1	572	1683	59	5		5	AMH	19	2251512	Silent	SNP	T	TCGA-B3-3926-01A-01D-1252-08		2251512	56877471	27	14359											
UBA52	7311	hgsc.bcm.edu;broad.mit.edu	37	19	18685757	18685757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	18685757	A	T	18685757	3	4	225	1	0	0	0	0	1	0	0	0	16843	130	5	5	278	5	UBA52	19	18685757	Missense_Mutation	SNP	A	TCGA-B3-3926-01A-01D-1252-08	16434245	18685757	40443226	28	14360											
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	C	48945880	T	C	48945880	2	2	225	1	0	0	0	0	0	0	0	1	6789	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-B3-3926-01A-01D-1252-08	30260123	48945880	10183103	29	14361											
THBD	7056	broad.mit.edu	37	20	23029807	23029807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	A	23029807	G	A	23029807	3	1	225	1	0	0	0	0	1	0	0	0	15864	1145	40	1	1396	1	THBD	20	23029807	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08		23029807	39995713	30	14362											
CDC42EP1	11135	broad.mit.edu	37	22	37962631	37962631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	37962631	T	G	37962631	3	3	225	1	0	0	0	0	1	0	0	0	3077	1696	59	5	277	5	CDC42EP1	22	37962631	Missense_Mutation	SNP	T	TCGA-B3-3926-01A-01D-1252-08		37962631	13341935	31	14363											
EGFL6	25975	broad.mit.edu	37	X	13635856	13635856	+	Silent	SNP	T	T	C	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	C	13635856	T	C	13635856	2	2	225	1	0	0	0	0	0	0	0	1	4965	1567	55	3		3	EGFL6	23	13635856	Silent	SNP	T	TCGA-B3-3926-01A-01D-1252-08		13635856	141634704	32	14364											
PLS3	5358	broad.mit.edu	37	X	114874764	114874764	+	Silent	SNP	A	A	G	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	G	114874764	A	G	114874764	2	3	225	1	0	0	0	0	0	0	0	1	12115	69	3	3		3	PLS3	23	114874764	Silent	SNP	A	TCGA-B3-3926-01A-01D-1252-08	101238908	114874764	40395796	33	14365											
NLGN4Y	22829	hgsc.bcm.edu	37	Y	16952767	16952767	+	Silent	SNP	C	C	T	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	T	16952767	C	T	16952767	2	4	225	1	0	0	0	0	0	0	0	1	10472	668	24	2		2	NLGN4Y	24	16952767	Silent	SNP	C	TCGA-B3-3926-01A-01D-1252-08		16952767	42420799	34	14366											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113616165	113616165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	113616165	C	A	113616165	3	1	226	1	0	0	0	0	1	0	0	0	8952	623	22	4	139	4	LRIG2	1	113616165	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08		113616165	135634456	1	14367											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	116941400	116941400	+	Missense_Mutation	SNP	G	G	C	rs11540954		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	116941400	G	C	116941400	3	2	226	1	0	0	0	0	1	0	0	0	1128	1174	41	4	2360	4	ATP1A1	1	116941400	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	3325235	116941400	132309221	2	14368											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169096584	169096584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	169096584	T	C	169096584	3	2	226	1	0	0	0	0	1	0	0	0	1132	1522	53	3	519	3	ATP1B1	1	169096584	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	52155184	169096584	80154037	3	14369											
SELE	6401	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169698749	169698749	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	-	169698749	T	-	169698749	7	5	226	1	0	1	0	1	0	0	0	0	14026	1609	56	0	1083	0	SELE	1	169698749	Frame_Shift_Del	DEL	T	TCGA-B3-4103-01A-01D-1458-08	602165	169698749	79551872	4	14370											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu	37	1	179965912	179965912	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	-	179965912	A	-	179965912	7	5	226	1	0	1	0	1	0	0	0	0	3256	130	5	0	638	0	CEP350	1	179965912	Frame_Shift_Del	DEL	A	TCGA-B3-4103-01A-01D-1458-08	10267163	179965912	69284709	5	14371											
ELF3	1999	broad.mit.edu;bcgsc.ca	37	1	201981806	201981814	+	In_Frame_Del	DEL	GGTCAGCAA	GGTCAGCAA	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	GGTCAGCAA	GGTCAGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	-	201981814	GGTCAGCAA	-	201981806	7	5	226	1	0	1	0	1	0	0	0	0	5057	1116	39	0	531	0	ELF3	1	201981806	In_Frame_Del	DEL	GGTCAGCAA	TCGA-B3-4103-01A-01D-1458-08	22015894	201981806	47268815	6	14372											
GOLT1A	127845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204183026	204183026	+	Silent	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	204183026	G	T	204183026	2	4	226	1	0	0	0	0	0	0	0	1	6577	1335	47	4		4	GOLT1A	1	204183026	Silent	SNP	G	TCGA-B3-4103-01A-01D-1458-08	2201220	204183026	45067595	7	14373											
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	10101557	10101557	+	Missense_Mutation	SNP	G	G	A	rs140278187		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	10101557	G	A	10101557	3	1	226	1	0	0	0	0	1	0	0	0	6770	1145	40	1	675	1	GRHL1	2	10101557	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		10101557	233097816	8	14374											
BRE	9577	broad.mit.edu	37	2	28550286	28550286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	28550286	A	G	28550286	3	3	226	1	0	0	0	0	1	0	0	0	1511	296	11	3	1323	3	BRE	2	28550286	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	18448729	28550286	214649087	9	14375											
TMEM37	140738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	120194829	120194829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	120194829	T	C	120194829	3	2	226	1	0	0	0	0	1	0	0	0	16170	1435	50	3	392	3	TMEM37	2	120194829	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	91644543	120194829	123004544	10	14376											
NEB	4703	broad.mit.edu	37	2	152484285	152484285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	152484285	C	A	152484285	3	1	226	1	0	0	0	0	1	0	0	0	10309	913	32	4	16247	4	NEB	2	152484285	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	32289456	152484285	90715088	11	14377											
KCNH7	90134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163241347	163241347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	163241347	A	G	163241347	3	3	226	1	0	0	0	0	1	0	0	0	8044	333	12	3	793	3	KCNH7	2	163241347	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	10757062	163241347	79958026	12	14378											
GRM2	2912	broad.mit.edu	37	3	51746862	51746862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	51746862	C	T	51746862	3	4	226	1	0	0	0	0	1	0	0	0	6804	739	26	2	830	2	GRM2	3	51746862	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08		51746862	146275568	13	14379											
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124515613	124515614	+	Nonsense_Mutation	DNP	CC	CC	AT	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	AT	124515614	CC	AT	124515613	4	1	226	1	0	0	0	0	0	1	0	0	7905	864	30	4	1108	4	ITGB5	3	124515613	Nonsense_Mutation	DNP	CC	TCGA-B3-4103-01A-01D-1458-08	72768751	124515613	73506817	14	14380											
MFN1	55669	ucsc.edu	37	3	179094914	179094914	+	Silent	SNP	T	T	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	179094914	T	G	179094914	2	3	226	1	0	0	0	0	0	0	0	1	9530	1741	61	5		5	MFN1	3	179094914	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	54579301	179094914	18927516	15	14381											
PCYT1A	5130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195974373	195974373	+	Silent	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	195974373	G	A	195974373	2	1	226	1	0	0	0	0	0	0	0	1	11617	1277	45	2		2	PCYT1A	3	195974373	Silent	SNP	G	TCGA-B3-4103-01A-01D-1458-08	16879459	195974373	2048057	16	14382											
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196387840	196387840	+	Silent	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	196387840	C	T	196387840	2	4	226	1	0	0	0	0	0	0	0	1	8995	610	22	2		2	LRRC33	3	196387840	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08	413467	196387840	1634590	17	14383											
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56301654	56301654	+	Silent	SNP	A	A	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	56301654	A	T	56301654	2	4	226	1	0	0	0	0	0	0	0	1	3551	291	11	5		5	CLOCK	4	56301654	Silent	SNP	A	TCGA-B3-4103-01A-01D-1458-08		56301654	134852622	18	14384											
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69978199	69978199	+	Silent	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	69978199	A	G	69978199	2	3	226	1	0	0	0	0	0	0	0	1	16974	446	16	3		3	UGT2B7	4	69978199	Silent	SNP	A	TCGA-B3-4103-01A-01D-1458-08	13676545	69978199	121176077	19	14385											
ARHGAP24	83478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	86921691	86921691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	86921691	A	G	86921691	3	3	226	1	0	0	0	0	1	0	0	0	873	333	12	3	2213	3	ARHGAP24	4	86921691	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	16943492	86921691	104232585	20	14386											
BMPR1B	658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	96025660	96025660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	96025660	G	A	96025660	3	1	226	1	0	0	0	0	1	0	0	0	1470	1261	44	2	87	2	BMPR1B	4	96025660	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	9103969	96025660	95128616	21	14387											
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	9226981	9226981	+	Silent	SNP	C	C	T	rs141767878		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	9226981	C	T	9226981	2	4	226	1	0	0	0	0	0	0	0	1	14050	666	23	1		1	SEMA5A	5	9226981	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08		9226981	171688279	22	14388											
ADAMTS19	171019	broad.mit.edu;bcgsc.ca	37	5	128956361	128956361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	128956361	A	G	128956361	3	3	226	1	0	0	0	0	1	0	0	0	264	217	8	3	1545	3	ADAMTS19	5	128956361	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	119729380	128956361	51958899	23	14389											
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161576298	161576298	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	161576298	A	T	161576298	3	4	226	1	0	0	0	0	1	0	0	0	6179	69	3	5	1261	5	GABRG2	5	161576298	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	32619937	161576298	19338962	24	14390											
VARS	7407	broad.mit.edu	37	6	31753451	31753451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	31753451	G	A	31753451	3	1	226	1	0	0	0	0	1	0	0	0	17135	1203	42	2	2722	2	VARS	6	31753451	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		31753451	139361616	25	14391											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56499603	56499603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	56499603	A	C	56499603	3	2	226	1	0	0	0	0	1	0	0	0	4785	101	4	5	18727	5	DST	6	56499603	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	24746152	56499603	114615464	26	14392											
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	71234676	71234676	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	71234676	T	A	71234676	3	1	226	1	0	0	0	0	1	0	0	0	5452	1464	51	5	2017	5	FAM135A	6	71234676	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	14735073	71234676	99880391	27	14393											
CCDC132	55610	broad.mit.edu	37	7	92882045	92882045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	92882045	A	G	92882045	3	3	226	1	0	0	0	0	1	0	0	0	2769	449	16	3	192	3	CCDC132	7	92882045	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08		92882045	66256618	28	14394											
AP4M1	9179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99700326	99700326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	99700326	T	C	99700326	3	2	226	1	0	0	0	0	1	0	0	0	753	1435	50	3	186	3	AP4M1	7	99700326	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	6818281	99700326	59438337	29	14395											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117364734	117364734	+	Silent	SNP	T	T	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	117364734	T	A	117364734	2	1	226	1	0	0	0	0	0	0	0	1	4047	1512	53	5		5	CTTNBP2	7	117364734	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	17664408	117364734	41773929	30	14396											
CTTNBP2	83992	broad.mit.edu;bcgsc.ca	37	7	117396642	117396642	+	Silent	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	117396642	G	A	117396642	2	1	226	1	0	0	0	0	0	0	0	1	4047	1164	41	2		2	CTTNBP2	7	117396642	Silent	SNP	G	TCGA-B3-4103-01A-01D-1458-08	31908	117396642	41742021	31	14397											
ARF5	381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	127229193	127229193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	127229193	A	G	127229193	3	3	226	1	0	0	0	0	1	0	0	0	847	333	12	3	130	3	ARF5	7	127229193	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	9832551	127229193	31909470	32	14398											
KRBA1	84626	broad.mit.edu	37	7	149422542	149422542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	149422542	G	C	149422542	3	2	226	1	0	0	0	0	1	0	0	0	8446	933	33	4	1297	4	KRBA1	7	149422542	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	22193349	149422542	9716121	33	14399											
SLC26A7	115111	broad.mit.edu	37	8	92330447	92330447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	92330447	G	A	92330447	3	1	226	1	0	0	0	0	1	0	0	0	14535	1203	42	2	495	2	SLC26A7	8	92330447	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		92330447	54033575	34	14400											
RBM12B	389677	broad.mit.edu	37	8	94746263	94746263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	94746263	C	A	94746263	3	1	226	1	0	0	0	0	1	0	0	0	13127	680	24	4	633	4	RBM12B	8	94746263	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	2415816	94746263	51617759	35	14401											
KIAA1429	25962	broad.mit.edu	37	8	95507107	95507107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	95507107	A	G	95507107	3	3	226	1	0	0	0	0	1	0	0	0	8238	449	16	3	836	3	KIAA1429	8	95507107	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	760844	95507107	50856915	36	14402											
ABRA	137735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	107782408	107782408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	107782408	C	A	107782408	3	1	226	1	0	0	0	0	1	0	0	0	100	739	26	4	1142	4	ABRA	8	107782408	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	12275301	107782408	38581614	37	14403											
MRPL13	28998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121455496	121455496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	121455496	G	A	121455496	3	1	226	1	0	0	0	0	1	0	0	0	9785	1348	47	2	480	2	MRPL13	8	121455496	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	13673088	121455496	24908526	38	14404											
CYHR1	50626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145690192	145690192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	145690192	C	G	145690192	3	3	226	1	0	0	0	0	1	0	0	0	4142	695	24	4	1348	4	CYHR1	8	145690192	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	24234696	145690192	673830	39	14405											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu	37	9	14824065	14824065	+	Silent	SNP	T	T	G	rs200760404	alternate_allele	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	14824065	T	G	14824065	2	3	226	1	0	0	0	0	0	0	0	1	6051	1509	53	5		5	FREM1	9	14824065	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08		14824065	126389366	40	14406											
TNFSF8	944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117666220	117666220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	117666220	A	C	117666220	3	2	226	1	0	0	0	0	1	0	0	0	16323	98	4	5	12	5	TNFSF8	9	117666220	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	102842155	117666220	23547211	41	14407											
TOR1A	1861	broad.mit.edu	37	9	132584984	132584984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	132584984	C	T	132584984	3	4	226	1	0	0	0	0	1	0	0	0	16383	739	26	2	694	2	TOR1A	9	132584984	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	14918764	132584984	8628447	42	14408											
FAM188A	80013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15879212	15879212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	15879212	T	A	15879212	3	1	226	1	0	0	0	0	1	0	0	0	5518	1635	57	5	810	5	FAM188A	10	15879212	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08		15879212	119655535	43	14409											
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	93593686	93593686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	93593686	T	C	93593686	3	2	226	1	0	0	0	0	1	0	0	0	16333	1522	53	3	1398	3	TNKS2	10	93593686	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	77714474	93593686	41941061	44	14410											
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	106075425	106075425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	106075425	C	T	106075425	3	4	226	1	0	0	0	0	1	0	0	0	7930	768	27	1	1262	1	ITPRIP	10	106075425	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	12481739	106075425	29459322	45	14411											
WDR11	55717	ucsc.edu	37	10	122622314	122622314	+	Silent	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	122622314	G	A	122622314	2	1	226	1	0	0	0	0	0	0	0	1	17285	1161	41	2		2	WDR11	10	122622314	Silent	SNP	G	TCGA-B3-4103-01A-01D-1458-08	16546889	122622314	12912433	46	14412											
MUC2	4583	hgsc.bcm.edu	37	11	1093502	1093502	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	1093502	C	G	1093502	3	3	226	1	0	0	0	0	1	0	0	0	9982	565	20	4	5439	4	MUC2	11	1093502	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08		1093502	133913014	47	14413	190	2									
MUC2	4583	hgsc.bcm.edu	37	11	1093507	1093507	+	Missense_Mutation	SNP	A	A	G	rs56189540		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	1093507	A	G	1093507	3	3	226	1	0	0	0	0	1	0	0	0	9982	333	12	3	5444	3	MUC2	11	1093507	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	5	1093507	133913009	48	14414	190	2									
SMPD1	6609	hgsc.bcm.edu	37	11	6411941	6411941	+	Missense_Mutation	SNP	C	C	T	rs78250081		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	6411941	C	T	6411941	3	4	226	1	0	0	0	0	1	0	0	0	14817	768	27	1	115	1	SMPD1	11	6411941	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	5318434	6411941	128594575	49	14415											
MRGPRX1	259249	broad.mit.edu;bcgsc.ca	37	11	18955994	18955994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	18955994	A	T	18955994	3	4	226	1	0	0	0	0	1	0	0	0	9773	188	7	5	634	5	MRGPRX1	11	18955994	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	12544053	18955994	116050522	50	14416											
ABCG4	64137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119027678	119027678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	119027678	G	T	119027678	3	4	226	1	0	0	0	0	1	0	0	0	70	971	34	4	1052	4	ABCG4	11	119027678	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	100071684	119027678	15978838	51	14417											
TXNRD1	7296	bcgsc.ca	37	12	104705164	104705164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	104705164	G	A	104705164	3	1	226	1	0	0	0	0	1	0	0	0	16819	1348	47	2	543	2	TXNRD1	12	104705164	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		104705164	29146731	52	14418											
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122413567	122413567	+	Silent	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	122413567	T	C	122413567	2	2	226	1	0	0	0	0	0	0	0	1	17329	1800	63	3		3	WDR66	12	122413567	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	17708403	122413567	11438328	53	14419											
RDH12	145226	broad.mit.edu	37	14	68191259	68191259	+	Silent	SNP	C	C	T	rs140371232		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	68191259	C	T	68191259	2	4	226	1	0	0	0	0	0	0	0	1	13204	755	27	1		1	RDH12	14	68191259	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08		68191259	39158281	54	14420											
ANGEL1	23357	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	77274402	77274411	+	Frame_Shift_Del	DEL	GAGTGAACTG	GAGTGAACTG	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	GAGTGAACTG	GAGTGAACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	-	77274411	GAGTGAACTG	-	77274402	7	5	226	1	0	1	0	1	0	0	0	0	608	933	33	0	1305	0	ANGEL1	14	77274402	Frame_Shift_Del	DEL	GAGTGAACTG	TCGA-B3-4103-01A-01D-1458-08	9083143	77274402	30075138	55	14421											
JAG2	3714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105622266	105622266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	105622266	T	C	105622266	3	2	226	1	0	0	0	0	1	0	0	0	7942	1609	56	3	3272	3	JAG2	14	105622266	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	28347864	105622266	1727274	56	14422											
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	81648105	81648105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	81648105	G	A	81648105	3	1	226	1	0	0	0	0	1	0	0	0	15998	971	34	2	2462	2	TMC3	15	81648105	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		81648105	20883287	57	14423											
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	100657190	100657190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	100657190	C	T	100657190	3	4	226	1	0	0	0	0	1	0	0	0	262	623	22	2	1577	2	ADAMTS17	15	100657190	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	19009085	100657190	1874202	58	14424											
IFT140	9742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1608090	1608090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	1608090	G	T	1608090	3	4	226	1	0	0	0	0	1	0	0	0	7563	1348	47	4	2195	4	IFT140	16	1608090	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		1608090	88746663	59	14425											
CASKIN1	57524	hgsc.bcm.edu	37	16	2230812	2230812	+	Missense_Mutation	SNP	G	G	A	rs185628064		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	2230812	G	A	2230812	3	1	226	1	0	0	0	0	1	0	0	0	2668	1203	42	2	1750	2	CASKIN1	16	2230812	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	622722	2230812	88123941	60	14426											
HCFC1R1	54985	broad.mit.edu;bcgsc.ca	37	16	3073346	3073346	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	3073346	G	C	3073346	3	2	226	1	0	0	0	0	1	0	0	0	6999	1328	46	4	255	4	HCFC1R1	16	3073346	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	842534	3073346	87281407	61	14427											
RBBP6	5930	broad.mit.edu	37	16	24551952	24551952	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	24551952	C	G	24551952	3	3	226	1	0	0	0	0	1	0	0	0	13116	855	30	4	7	4	RBBP6	16	24551952	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	21478606	24551952	65802801	62	14428											
ANKFY1	51479	broad.mit.edu;bcgsc.ca	37	17	4084580	4084580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	4084580	T	C	4084580	3	2	226	1	0	0	0	0	1	0	0	0	626	1812	63	3	1340	3	ANKFY1	17	4084580	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08		4084580	77110630	63	14429											
ASGR1	432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7081872	7081872	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	7081872	T	G	7081872	3	3	226	1	0	0	0	0	1	0	0	0	1039	1551	54	5	896	5	ASGR1	17	7081872	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	2997292	7081872	74113338	64	14430											
PFAS	5198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8170542	8170542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	8170542	C	T	8170542	3	4	226	1	0	0	0	0	1	0	0	0	11761	623	22	2	3254	2	PFAS	17	8170542	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	1088670	8170542	73024668	65	14431											
PIPOX	51268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27370356	27370357	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	27370357	-	G	27370356	7	5	226	1	0	1	1	0	0	0	0	0	11950	202	7	0	115	0	PIPOX	17	27370356	Frame_Shift_Ins	INS	-	TCGA-B3-4103-01A-01D-1458-08	19199814	27370356	53824854	66	14432											
MAP3K14	9020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43364549	43364549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	43364549	C	T	43364549	3	4	226	1	0	0	0	0	1	0	0	0	9255	835	29	2	2386	2	MAP3K14	17	43364549	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	15994193	43364549	37830661	67	14433											
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61562641	61562641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	61562641	T	C	61562641	3	2	226	1	0	0	0	0	1	0	0	0	136	1406	49	3	2219	3	ACE	17	61562641	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	18198092	61562641	19632569	68	14434											
MYOM1	8736	broad.mit.edu	37	18	3188900	3188900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	3188900	T	C	3188900	3	2	226	1	0	0	0	0	1	0	0	0	10098	1609	56	3	4580	3	MYOM1	18	3188900	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08		3188900	74888348	69	14435											
VPS4B	9525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61058289	61058289	+	Silent	SNP	T	T	C	rs200045966		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	C	61058289	T	C	61058289	2	2	226	1	0	0	0	0	0	0	0	1	17225	1393	49	3		3	VPS4B	18	61058289	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	57869389	61058289	17018959	70	14436											
DAZAP1	26528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1428875	1428875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	1428875	A	G	1428875	3	3	226	1	0	0	0	0	1	0	0	0	4246	72	3	3	611	3	DAZAP1	19	1428875	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08		1428875	57700108	71	14437											
EEF2	1938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3979985	3979985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	3979985	C	T	3979985	3	4	226	1	0	0	0	0	1	0	0	0	4931	855	30	2	1174	2	EEF2	19	3979985	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	2551110	3979985	55148998	72	14438											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8182139	8182139	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	-	8182139	T	-	8182139	7	5	226	1	0	1	0	1	0	0	0	0	5711	1667	58	0	5077	0	FBN3	19	8182139	Frame_Shift_Del	DEL	T	TCGA-B3-4103-01A-01D-1458-08	4202154	8182139	50946844	73	14439											
EIF3G	8666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10230530	10230530	+	Silent	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	10230530	A	G	10230530	2	3	226	1	0	0	0	0	0	0	0	1	5019	407	15	3		3	EIF3G	19	10230530	Silent	SNP	A	TCGA-B3-4103-01A-01D-1458-08	2048391	10230530	48898453	74	14440											
ZNF627	199692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11728624	11728624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	11728624	G	T	11728624	3	4	226	1	0	0	0	0	1	0	0	0	18063	1029	36	4	1320	4	ZNF627	19	11728624	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	1498094	11728624	47400359	75	14441											
NXNL1	115861	broad.mit.edu	37	19	17571478	17571478	+	Silent	SNP	T	T	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	17571478	T	G	17571478	2	3	226	1	0	0	0	0	0	0	0	1	10795	1625	57	5		5	NXNL1	19	17571478	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	5842854	17571478	41557505	76	14442											
BCKDHA	593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41928188	41928188	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	41928188	C	G	41928188	3	3	226	1	0	0	0	0	1	0	0	0	1359	565	20	4	788	4	BCKDHA	19	41928188	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	24356710	41928188	17200795	77	14443											
SLC5A3	6526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35467607	35467607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	35467607	G	A	35467607	3	1	226	1	0	0	0	0	1	0	0	0	14679	1029	36	2	112	2	SLC5A3	21	35467607	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		35467607	12662288	78	14444											
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24581140	24581140	+	Silent	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	A	24581140	C	A	24581140	2	1	226	1	0	0	0	0	0	0	0	1	15420	668	24	4		4	SUSD2	22	24581140	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08		24581140	26723426	79	14445											
BAIAP2L2	80115	ucsc.edu	37	22	38483204	38483204	+	Missense_Mutation	SNP	C	C	T	rs201090429		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	T	38483204	C	T	38483204	3	4	226	1	0	0	0	0	1	0	0	0	1303	536	19	1	419	1	BAIAP2L2	22	38483204	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	13902064	38483204	12821362	80	14446											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41574679	41574681	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	-	41574681	CCC	-	41574679	7	5	226	1	0	1	0	1	0	0	0	0	5150	739	26	0	7086	0	EP300	22	41574679	In_Frame_Del	DEL	CCC	TCGA-B3-4103-01A-01D-1458-08	3091475	41574679	9729887	81	14447											
TTLL1	25809	broad.mit.edu;bcgsc.ca	37	22	43442517	43442517	+	Silent	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	G	43442517	C	G	43442517	2	3	226	1	0	0	0	0	0	0	0	1	16734	813	29	4		4	TTLL1	22	43442517	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08	1867838	43442517	7862049	82	14448											
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu	37	1	1334456	1334456	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	1334456	G	A	1334456	2	1	227	1	0	0	0	0	0	0	0	1	2934	1161	41	2		2	CCNL2	1	1334456	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08		1334456	247916165	1	14449											
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu	37	1	1334592	1334592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	1334592	G	A	1334592	3	1	227	1	0	0	0	0	1	0	0	0	2934	1059	37	1	1537	1	CCNL2	1	1334592	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	136	1334592	247916029	2	14450											
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	6528353	6528353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	6528353	C	T	6528353	3	4	227	1	0	0	0	0	1	0	0	0	12080	884	31	1	485	1	PLEKHG5	1	6528353	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	5193761	6528353	242722268	3	14451											
PRAMEF1	65121	hgsc.bcm.edu;broad.mit.edu	37	1	12854436	12854436	+	Silent	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	12854436	G	C	12854436	2	2	227	1	0	0	0	0	0	0	0	1	12435	1277	45	4		4	PRAMEF1	1	12854436	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	6326083	12854436	236396185	4	14452											
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	36748232	36748232	+	Missense_Mutation	SNP	G	G	A	rs148045717		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	36748232	G	A	36748232	3	1	227	1	0	0	0	0	1	0	0	0	15886	1145	40	1	70	1	THRAP3	1	36748232	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	23893796	36748232	212502389	5	14453											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	39910503	39910503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	39910503	G	C	39910503	3	2	227	1	0	0	0	0	1	0	0	0	9151	942	33	4	19877	4	MACF1	1	39910503	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	3162271	39910503	209340118	6	14454											
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	113126670	113126670	+	Silent	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	113126670	T	C	113126670	2	2	227	1	0	0	0	0	0	0	0	1	15242	1683	59	3		3	ST7L	1	113126670	Silent	SNP	T	TCGA-B3-4104-01A-01D-1458-08	73216167	113126670	136123951	7	14455											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	116931284	116931284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	116931284	G	A	116931284	3	1	227	1	0	0	0	0	1	0	0	0	1128	1291	45	2	564	2	ATP1A1	1	116931284	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	3804614	116931284	132319337	8	14456											
NBPF14	25832	hgsc.bcm.edu	37	1	148025786	148025786	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	148025786	G	A	148025786	4	1	227	1	0	0	0	0	0	1	0	0	10201	1328	46	2	2807	2	NBPF14	1	148025786	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	31094502	148025786	101224835	9	14457											
NBPF14	25832	hgsc.bcm.edu;broad.mit.edu	37	1	148025829	148025829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	148025829	C	T	148025829	3	4	227	1	0	0	0	0	1	0	0	0	10201	710	25	2	2850	2	NBPF14	1	148025829	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	43	148025829	101224792	10	14458											
SHE	126669	hgsc.bcm.edu	37	1	154474217	154474217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	154474217	C	T	154474217	3	4	227	1	0	0	0	0	1	0	0	0	14289	536	19	1	1225	1	SHE	1	154474217	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	6448388	154474217	94776404	11	14459											
TDRD10	126668	hgsc.bcm.edu;broad.mit.edu	37	1	154493835	154493835	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	154493835	G	A	154493835	2	1	227	1	0	0	0	0	0	0	0	1	15743	1277	45	2		2	TDRD10	1	154493835	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	19618	154493835	94756786	12	14460											
NDUFS2	4720	broad.mit.edu	37	1	161183707	161183707	+	Silent	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	161183707	C	A	161183707	2	1	227	1	0	0	0	0	0	0	0	1	10299	816	29	4		4	NDUFS2	1	161183707	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	6689872	161183707	88066914	13	14461											
F5	2153	broad.mit.edu	37	1	169525999	169525999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	169525999	G	C	169525999	3	2	227	1	0	0	0	0	1	0	0	0	5350	1252	44	4	5917	4	F5	1	169525999	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	8342292	169525999	79724622	14	14462											
XPR1	9213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	180849312	180849312	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	180849312	G	C	180849312	3	2	227	1	0	0	0	0	1	0	0	0	17463	942	33	4	1963	4	XPR1	1	180849312	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	11323313	180849312	68401309	15	14463											
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu	37	1	204587907	204587907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	204587907	C	T	204587907	3	4	227	1	0	0	0	0	1	0	0	0	9042	768	27	1	931	1	LRRN2	1	204587907	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	23738595	204587907	44662714	16	14464											
SLC26A9	115019	hgsc.bcm.edu;ucsc.edu	37	1	205888030	205888030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	205888030	C	T	205888030	3	4	227	1	0	0	0	0	1	0	0	0	14537	826	29	2	489	2	SLC26A9	1	205888030	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	1300123	205888030	43362591	17	14465											
ADCY3	109	broad.mit.edu	37	2	25057766	25057766	+	Missense_Mutation	SNP	G	G	A	rs142082596		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	25057766	G	A	25057766	3	1	227	1	0	0	0	0	1	0	0	0	295	1087	38	1	1784	1	ADCY3	2	25057766	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		25057766	218141607	18	14466											
ETAA1	54465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	67631299	67631299	+	Silent	SNP	A	A	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	67631299	A	G	67631299	2	3	227	1	0	0	0	0	0	0	0	1	5269	11	1	3		3	ETAA1	2	67631299	Silent	SNP	A	TCGA-B3-4104-01A-01D-1458-08	42573533	67631299	175568074	19	14467											
AFF3	3899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	100623250	100623250	+	Silent	SNP	G	G	A	rs138844530		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	100623250	G	A	100623250	2	1	227	1	0	0	0	0	0	0	0	1	358	1136	40	1		1	AFF3	2	100623250	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	32991951	100623250	142576123	20	14468											
SH3RF3	344558	broad.mit.edu	37	2	110065844	110065844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	110065844	G	A	110065844	3	1	227	1	0	0	0	0	1	0	0	0	14273	1087	38	1	2077	1	SH3RF3	2	110065844	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	9442594	110065844	133133529	21	14469											
POTEF	728378	hgsc.bcm.edu	37	2	130868165	130868165	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	130868165	G	C	130868165	3	2	227	1	0	0	0	0	1	0	0	0	12272	933	33	4	2265	4	POTEF	2	130868165	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	20802321	130868165	112331208	22	14470											
POTEE	445582	hgsc.bcm.edu	37	2	131985905	131985905	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	131985905	C	G	131985905	3	3	227	1	0	0	0	0	1	0	0	0	12271	912	32	4	1024	4	POTEE	2	131985905	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	1117740	131985905	111213468	23	14471											
NEB	4703	broad.mit.edu	37	2	152397247	152397247	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	152397247	C	T	152397247	2	4	227	1	0	0	0	0	0	0	0	1	10309	825	29	2		2	NEB	2	152397247	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	20411342	152397247	90802126	24	14472											
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	219886640	219886640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	219886640	C	T	219886640	3	4	227	1	0	0	0	0	1	0	0	0	2745	864	30	2	2857	2	CCDC108	2	219886640	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	67489393	219886640	23312733	25	14473											
TUBA4A	7277	broad.mit.edu	37	2	220115274	220115274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	220115274	C	T	220115274	3	4	227	1	0	0	0	0	1	0	0	0	16761	768	27	1	203	1	TUBA4A	2	220115274	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	228634	220115274	23084099	26	14474											
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu	37	2	220420911	220420911	+	Silent	SNP	G	G	A	rs200341414		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	220420911	G	A	220420911	2	1	227	1	0	0	0	0	0	0	0	1	10820	1103	39	1		1	OBSL1	2	220420911	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	305637	220420911	22778462	27	14475											
LHFPL4	375323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	9547649	9547649	+	Splice_Site	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	9547649	G	A	9547649	5	1	227	1	0	0	0	0	0	0	1	0	8774	1101	38	1	106	1	LHFPL4	3	9547649	Splice_Site	SNP	G	TCGA-B3-4104-01A-01D-1458-08		9547649	188474781	28	14476											
EFHB	151651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	19925989	19925989	+	Silent	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	19925989	G	C	19925989	2	2	227	1	0	0	0	0	0	0	0	1	4947	1161	41	4		4	EFHB	3	19925989	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	10378340	19925989	178096441	29	14477											
RAD54L2	23132	broad.mit.edu	37	3	51667682	51667682	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	51667682	C	T	51667682	2	4	227	1	0	0	0	0	0	0	0	1	13007	477	17	2		2	RAD54L2	3	51667682	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	31741693	51667682	146354748	30	14478											
PARP3	10039	broad.mit.edu	37	3	51979556	51979556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	51979556	G	C	51979556	3	2	227	1	0	0	0	0	1	0	0	0	11469	1291	45	4	954	4	PARP3	3	51979556	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	311874	51979556	146042874	31	14479											
FLNB	2317	broad.mit.edu	37	3	58089735	58089735	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	58089735	C	T	58089735	2	4	227	1	0	0	0	0	0	0	0	1	5941	547	19	1		1	FLNB	3	58089735	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	6110179	58089735	139932695	32	14480											
GOLGB1	2804	broad.mit.edu	37	3	121386444	121386444	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	121386444	G	A	121386444	4	1	227	1	0	0	0	0	0	1	0	0	6572	1299	45	2	373	2	GOLGB1	3	121386444	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	63296709	121386444	76635986	33	14481											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	130287049	130287049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	130287049	G	A	130287049	3	1	227	1	0	0	0	0	1	0	0	0	3705	1058	37	1	2020	1	COL6A6	3	130287049	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	8900605	130287049	67735381	34	14482											
DLG1	1739	broad.mit.edu	37	3	196771534	196771534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	196771534	G	C	196771534	3	2	227	1	0	0	0	0	1	0	0	0	4556	942	33	4	43	4	DLG1	3	196771534	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	66484485	196771534	1250896	35	14483											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu	37	4	1803568	1803568	+	Missense_Mutation	SNP	C	C	G	rs121913483	bycluster	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	1803568	C	G	1803568	3	3	227	1	0	0	0	0	1	0	0	0	5874	855	30	4	768	4	FGFR3	4	1803568	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		1803568	189350708	36	14484			1	26		3	3	182	C		2.487585e-07
FGFR3	2261	broad.mit.edu	37	4	1803584	1803584	+	Silent	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	1803584	C	A	1803584	2	1	227	1	0	0	0	0	0	0	0	1	5874	845	30	4		4	FGFR3	4	1803584	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	16	1803584	189350692	37	14485			1	26		3	3	182	C		2.487585e-07
FGFR3	2261	ucsc.edu	37	4	1803749	1803749	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	1803749	C	T	1803749	2	4	227	1	0	0	0	0	0	0	0	1	5874	813	29	2		2	FGFR3	4	1803749	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	165	1803749	189350527	38	14486			1	26		3	3	182	C		2.487585e-07
UNC5C	8633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	96127913	96127913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	96127913	G	T	96127913	3	4	227	1	0	0	0	0	1	0	0	0	17005	1232	43	4	1051	4	UNC5C	4	96127913	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	94324164	96127913	95026363	39	14487											
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	122722582	122722582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	122722582	G	A	122722582	3	1	227	1	0	0	0	0	1	0	0	0	5323	1290	45	2	5	2	EXOSC9	4	122722582	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	26594669	122722582	68431694	40	14488											
TRIML1	339976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	189068521	189068521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	189068521	G	A	189068521	3	1	227	1	0	0	0	0	1	0	0	0	16562	1145	40	1	1424	1	TRIML1	4	189068521	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	66345939	189068521	2085755	41	14489											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140725009	140725009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	140725009	C	T	140725009	3	4	227	1	0	0	0	0	1	0	0	0	11562	855	30	2	1411	2	PCDHGA3	5	140725009	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		140725009	40190251	42	14490											
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140811015	140811015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	140811015	T	C	140811015	3	2	227	1	0	0	0	0	1	0	0	0	11560	1696	59	3	691	3	PCDHGA12	5	140811015	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	86006	140811015	40104245	43	14491											
CLINT1	9685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	157240138	157240138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	157240138	C	G	157240138	3	3	227	1	0	0	0	0	1	0	0	0	3533	912	32	4	1459	4	CLINT1	5	157240138	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	16429123	157240138	23675122	44	14492											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	180048230	180048230	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	180048230	C	T	180048230	2	4	227	1	0	0	0	0	0	0	0	1	5951	755	27	1		1	FLT4	5	180048230	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	22808092	180048230	867030	45	14493											
OR14J1	442191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	29274483	29274483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	29274483	C	T	29274483	3	4	227	1	0	0	0	0	1	0	0	0	10955	838	29	2	19	2	OR14J1	6	29274483	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		29274483	141840584	46	14494											
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32945959	32945959	+	Silent	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	32945959	C	G	32945959	2	3	227	1	0	0	0	0	0	0	0	1	1504	581	21	4		4	BRD2	6	32945959	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3671476	32945959	138169108	47	14495											
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32947799	32947799	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	32947799	C	G	32947799	4	3	227	1	0	0	0	0	0	1	0	0	1504	838	29	4	2074	4	BRD2	6	32947799	Nonsense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	1840	32947799	138167268	48	14496											
SMPD2	6610	hgsc.bcm.edu;broad.mit.edu	37	6	109763791	109763791	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	-	109763791	C	-	109763791	7	5	227	1	0	1	0	1	0	0	0	0	14818	884	31	0	476	0	SMPD2	6	109763791	Frame_Shift_Del	DEL	C	TCGA-B3-4104-01A-01D-1458-08	76815992	109763791	61351276	49	14497											
HECW1	23072	broad.mit.edu	37	7	43519234	43519234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	43519234	G	C	43519234	3	2	227	1	0	0	0	0	1	0	0	0	7049	1058	37	4	3183	4	HECW1	7	43519234	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		43519234	115619429	50	14498											
CTTNBP2	83992	broad.mit.edu	37	7	117407188	117407188	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	117407188	C	G	117407188	3	3	227	1	0	0	0	0	1	0	0	0	4047	922	32	4	2230	4	CTTNBP2	7	117407188	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	73887954	117407188	41731475	51	14499											
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	136700056	136700056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	136700056	G	T	136700056	3	4	227	1	0	0	0	0	1	0	0	0	3379	1241	43	4	446	4	CHRM2	7	136700056	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	19292868	136700056	22438607	52	14500											
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	151372582	151372582	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	151372582	C	G	151372582	3	3	227	1	0	0	0	0	1	0	0	0	12511	681	24	4	1153	4	PRKAG2	7	151372582	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	14672526	151372582	7766081	53	14501											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	151879016	151879016	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	151879016	G	A	151879016	4	1	227	1	0	0	0	0	0	1	0	0	9629	1299	45	2	8902	2	MLL3	7	151879016	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	506434	151879016	7259647	54	14502											
ERLIN2	11160	broad.mit.edu	37	8	37597912	37597912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	37597912	G	A	37597912	3	1	227	1	0	0	0	0	1	0	0	0	5235	1203	42	2	143	2	ERLIN2	8	37597912	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		37597912	108766110	55	14503											
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	53028901	53028901	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	53028901	C	T	53028901	2	4	227	1	0	0	0	0	0	0	0	1	15224	813	29	2		2	ST18	8	53028901	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	15430989	53028901	93335121	56	14504			2	27		2	2	12	C		4.29946e-05
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	53028912	53028912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	53028912	C	T	53028912	3	4	227	1	0	0	0	0	1	0	0	0	15224	835	29	2	225	2	ST18	8	53028912	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	11	53028912	93335110	57	14505			2	27		2	2	12	C		4.29946e-05
GRHL2	79977	broad.mit.edu	37	8	102631907	102631907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	102631907	C	G	102631907	3	3	227	1	0	0	0	0	1	0	0	0	6771	816	29	4	1273	4	GRHL2	8	102631907	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	49602995	102631907	43732115	58	14506											
VLDLR	7436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	2651933	2651933	+	Missense_Mutation	SNP	G	G	A	rs183359461	alternate_allele	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	2651933	G	A	2651933	3	1	227	1	0	0	0	0	1	0	0	0	17186	1087	38	1	2461	1	VLDLR	9	2651933	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		2651933	138561498	59	14507											
TYRP1	7306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	12704628	12704628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	12704628	C	A	12704628	3	1	227	1	0	0	0	0	1	0	0	0	16828	594	21	4	1202	4	TYRP1	9	12704628	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	10052695	12704628	128508803	60	14508											
C9orf24	84688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	34397497	34397497	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	34397497	C	T	34397497	2	4	227	1	0	0	0	0	0	0	0	1	2477	666	23	1		1	C9orf24	9	34397497	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	21692869	34397497	106815934	61	14509											
ALDH1B1	219	hgsc.bcm.edu;broad.mit.edu	37	9	38396007	38396007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	38396007	C	T	38396007	3	4	227	1	0	0	0	0	1	0	0	0	493	652	23	1	264	1	ALDH1B1	9	38396007	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3998510	38396007	102817424	62	14510											
CAMSAP1	157922	ucsc.edu	37	9	138713398	138713398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	138713398	C	T	138713398	3	4	227	1	0	0	0	0	1	0	0	0	2613	739	26	2	1727	2	CAMSAP1	9	138713398	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	100317391	138713398	2500033	63	14511											
C9orf69	90120	hgsc.bcm.edu	37	9	139008746	139008746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	139008746	T	C	139008746	3	2	227	1	0	0	0	0	1	0	0	0	2494	1490	52	3	336	3	C9orf69	9	139008746	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	295348	139008746	2204685	64	14512											
NEBL	10529	hgsc.bcm.edu;broad.mit.edu	37	10	21309109	21309109	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	21309109	G	A	21309109	2	1	227	1	0	0	0	0	0	0	0	1	10310	1281	45	2		2	NEBL	10	21309109	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08		21309109	114225638	65	14513											
SGMS1	259230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	52071078	52071078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	52071078	T	C	52071078	3	2	227	1	0	0	0	0	1	0	0	0	14227	1406	49	3	414	3	SGMS1	10	52071078	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	30761969	52071078	83463669	66	14514											
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	94297234	94297234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	94297234	G	C	94297234	3	2	227	1	0	0	0	0	1	0	0	0	7500	1174	41	4	2983	4	IDE	10	94297234	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	42226156	94297234	41237513	67	14515											
RIC8A	60626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	209483	209483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	209483	T	A	209483	3	1	227	1	0	0	0	0	1	0	0	0	13368	1667	58	5	219	5	RIC8A	11	209483	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08		209483	134797033	68	14516											
OR4S2	219431	broad.mit.edu	37	11	55418712	55418712	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	55418712	C	T	55418712	2	4	227	1	0	0	0	0	0	0	0	1	11090	825	29	2		2	OR4S2	11	55418712	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	55209229	55418712	79587804	69	14517											
APLNR	187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57004337	57004337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	57004337	G	C	57004337	3	2	227	1	0	0	0	0	1	0	0	0	777	933	33	4	1004	4	APLNR	11	57004337	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	1585625	57004337	78002179	70	14518											
MS4A15	219995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	60540926	60540926	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	60540926	T	A	60540926	3	1	227	1	0	0	0	0	1	0	0	0	9866	1493	52	5	481	5	MS4A15	11	60540926	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	3536589	60540926	74465590	71	14519											
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	61026184	61026184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	61026184	G	A	61026184	3	1	227	1	0	0	0	0	1	0	0	0	17257	1348	47	2	40	2	VWCE	11	61026184	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	485258	61026184	73980332	72	14520											
CORO1B	57175	hgsc.bcm.edu;broad.mit.edu	37	11	67207603	67207603	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	-	67207603	C	-	67207603	7	5	227	1	0	1	0	1	0	0	0	0	3756	564	20	0	492	0	CORO1B	11	67207603	Frame_Shift_Del	DEL	C	TCGA-B3-4104-01A-01D-1458-08	6181419	67207603	67798913	73	14521											
STARD10	10809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	72470333	72470333	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	72470333	C	G	72470333	3	3	227	1	0	0	0	0	1	0	0	0	15267	835	29	4	594	4	STARD10	11	72470333	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	5262730	72470333	62536183	74	14522											
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	74985127	74985127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	74985127	G	C	74985127	3	2	227	1	0	0	0	0	1	0	0	0	980	942	33	4	375	4	ARRB1	11	74985127	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	2514794	74985127	60021389	75	14523											
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	48142257	48142257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	48142257	G	A	48142257	3	1	227	1	0	0	0	0	1	0	0	0	13058	1174	41	2	1616	2	RAPGEF3	12	48142257	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		48142257	85709638	76	14524											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	49425839	49425839	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	49425839	G	A	49425839	4	1	227	1	0	0	0	0	0	1	0	0	9628	1299	45	2	4028	2	MLL2	12	49425839	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	1283582	49425839	84426056	77	14525											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	12	49426526	49426526	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	49426526	G	A	49426526	4	1	227	1	0	0	0	0	0	1	0	0	9628	1299	45	2	4715	2	MLL2	12	49426526	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	687	49426526	84425369	78	14526											
HSP90B1	7184	broad.mit.edu	37	12	104327895	104327895	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	104327895	G	C	104327895	3	2	227	1	0	0	0	0	1	0	0	0	7410	1281	45	4	591	4	HSP90B1	12	104327895	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	54901369	104327895	29524000	79	14527											
INSM2	84684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	36005048	36005048	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	36005048	C	T	36005048	2	4	227	1	0	0	0	0	0	0	0	1	7779	747	26	2		2	INSM2	14	36005048	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08		36005048	71344492	80	14528											
MIA2	117153	hgsc.bcm.edu	37	14	39717145	39717145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	39717145	A	G	39717145	3	3	227	1	0	0	0	0	1	0	0	0	9571	449	16	3	1381	3	MIA2	14	39717145	Missense_Mutation	SNP	A	TCGA-B3-4104-01A-01D-1458-08	3712097	39717145	67632395	81	14529											
FKBP3	2287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	45603575	45603575	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	45603575	G	A	45603575	2	1	227	1	0	0	0	0	0	0	0	1	5916	933	33	2		2	FKBP3	14	45603575	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	5886430	45603575	61745965	82	14530											
ZFP36L1	677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	69256349	69256349	+	Silent	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	69256349	C	G	69256349	2	3	227	1	0	0	0	0	0	0	0	1	17658	813	29	4		4	ZFP36L1	14	69256349	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	23652774	69256349	38093191	83	14531											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	75514890	75514890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	75514890	G	C	75514890	3	2	227	1	0	0	0	0	1	0	0	0	9625	942	33	4	2940	4	MLH3	14	75514890	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	6258541	75514890	31834650	84	14532											
PPP2R5C	5527	broad.mit.edu	37	14	102391505	102391505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	102391505	C	G	102391505	3	3	227	1	0	0	0	0	1	0	0	0	12404	855	30	4	1918	4	PPP2R5C	14	102391505	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	26876615	102391505	4958035	85	14533											
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	26793190	26793190	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	26793190	G	C	26793190	4	2	227	1	0	0	0	0	0	1	0	0	6175	1294	45	4	253	4	GABRB3	15	26793190	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		26793190	75738202	86	14534											
APBA2	321	broad.mit.edu	37	15	29368274	29368274	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	29368274	C	A	29368274	4	1	227	1	0	0	0	0	0	1	0	0	757	838	29	4	1059	4	APBA2	15	29368274	Nonsense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	2575084	29368274	73163118	87	14535											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	51857284	51857284	+	Splice_Site	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	51857284	C	A	51857284	5	1	227	1	0	0	0	0	0	0	1	0	4597	521	18	4	8908	4	DMXL2	15	51857284	Splice_Site	SNP	C	TCGA-B3-4104-01A-01D-1458-08	22489010	51857284	50674108	88	14536											
NTN3	4917	broad.mit.edu	37	16	2522390	2522390	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	2522390	G	C	2522390	3	2	227	1	0	0	0	0	1	0	0	0	10708	1203	42	4	690	4	NTN3	16	2522390	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		2522390	87832363	89	14537											
GGA2	23062	broad.mit.edu	37	16	23503028	23503028	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	23503028	G	C	23503028	3	2	227	1	0	0	0	0	1	0	0	0	6360	1066	37	4	1448	4	GGA2	16	23503028	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	20980638	23503028	66851725	90	14538											
SEZ6L2	26470	broad.mit.edu	37	16	29884594	29884594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	29884594	A	G	29884594	3	3	227	1	0	0	0	0	1	0	0	0	14157	304	11	3	336	3	SEZ6L2	16	29884594	Missense_Mutation	SNP	A	TCGA-B3-4104-01A-01D-1458-08	6381566	29884594	60470159	91	14539											
CX3CL1	6376	hgsc.bcm.edu;broad.mit.edu	37	16	57413597	57413597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	57413597	C	T	57413597	3	4	227	1	0	0	0	0	1	0	0	0	4076	838	29	2	128	2	CX3CL1	16	57413597	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	27529003	57413597	32941156	92	14540											
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	74990405	74990405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	74990405	G	A	74990405	3	1	227	1	0	0	0	0	1	0	0	0	17320	1290	45	2	2812	2	WDR59	16	74990405	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	17576808	74990405	15364348	93	14541											
ZDHHC7	55625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	85010706	85010706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	85010706	C	T	85010706	3	4	227	1	0	0	0	0	1	0	0	0	17632	893	31	1	189	1	ZDHHC7	16	85010706	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	10020301	85010706	5344047	94	14542											
ITGAE	3682	hgsc.bcm.edu;broad.mit.edu	37	17	3659152	3659152	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	3659152	A	T	3659152	3	4	227	1	0	0	0	0	1	0	0	0	7892	101	4	5	2412	5	ITGAE	17	3659152	Missense_Mutation	SNP	A	TCGA-B3-4104-01A-01D-1458-08		3659152	77536058	95	14543											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7579415	7579415	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	7579415	C	T	7579415	4	4	227	1	0	0	0	0	0	1	0	0	16393	595	21	2	1030	2	TP53	17	7579415	Nonsense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3920263	7579415	73615795	96	14544											
MLLT6	4302	hgsc.bcm.edu	37	17	36881009	36881009	+	Missense_Mutation	SNP	C	C	A	rs150198262	byfrequency;alternate_allele	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	36881009	C	A	36881009	3	1	227	1	0	0	0	0	1	0	0	0	9637	768	27	4	3094	4	MLLT6	17	36881009	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	29301594	36881009	44314201	97	14545											
KRT13	3860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39659037	39659037	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	39659037	T	A	39659037	3	1	227	1	0	0	0	0	1	0	0	0	8457	1638	57	5	467	5	KRT13	17	39659037	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	2778028	39659037	41536173	98	14546											
DBF4B	80174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	42828063	42828063	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	42828063	C	T	42828063	2	4	227	1	0	0	0	0	0	0	0	1	4251	842	30	2		2	DBF4B	17	42828063	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3169026	42828063	38367147	99	14547											
EPN3	55040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48615544	48615544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	48615544	G	A	48615544	3	1	227	1	0	0	0	0	1	0	0	0	5189	1291	45	2	673	2	EPN3	17	48615544	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	5787481	48615544	32579666	100	14548											
EPN3	55040	hgsc.bcm.edu;ucsc.edu	37	17	48616322	48616322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	48616322	G	C	48616322	3	2	227	1	0	0	0	0	1	0	0	0	5189	933	33	4	769	4	EPN3	17	48616322	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	778	48616322	32578888	101	14549											
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48628090	48628090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	48628090	G	A	48628090	3	1	227	1	0	0	0	0	1	0	0	0	15018	943	33	2	1237	2	SPATA20	17	48628090	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	11768	48628090	32567120	102	14550											
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48628385	48628385	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	48628385	G	A	48628385	2	1	227	1	0	0	0	0	0	0	0	1	15018	933	33	2		2	SPATA20	17	48628385	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	295	48628385	32566825	103	14551											
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	62238165	62238165	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	62238165	C	G	62238165	3	3	227	1	0	0	0	0	1	0	0	0	15793	922	32	4	603	4	TEX2	17	62238165	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	13609780	62238165	18957045	104	14552											
CACNG4	27092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	65026963	65026963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	65026963	T	C	65026963	3	2	227	1	0	0	0	0	1	0	0	0	2561	1464	51	3	841	3	CACNG4	17	65026963	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	2788798	65026963	16168247	105	14553											
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	79249777	79249777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	79249777	C	T	79249777	3	4	227	1	0	0	0	0	1	0	0	0	14615	835	29	2	2769	2	SLC38A10	17	79249777	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	14222814	79249777	1945433	106	14554											
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	28660162	28660162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	C	28660162	G	C	28660162	3	2	227	1	0	0	0	0	1	0	0	0	4768	1174	41	4	1353	4	DSC2	18	28660162	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		28660162	49417086	107	14555											
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	757669	757669	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	757669	C	T	757669	2	4	227	1	0	0	0	0	0	0	0	1	1915	535	19	1		1	C19orf21	19	757669	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08		757669	58371314	108	14556											
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	18279617	18279617	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	18279617	G	A	18279617	2	1	227	1	0	0	0	0	0	0	0	1	11926	1074	38	1		1	PIK3R2	19	18279617	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	17521948	18279617	40849366	109	14557											
PRR12	57479	hgsc.bcm.edu;broad.mit.edu	37	19	50099849	50099849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	50099849	G	A	50099849	3	1	227	1	0	0	0	0	1	0	0	0	12594	1087	38	1	2271	1	PRR12	19	50099849	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	31820232	50099849	9029134	110	14558											
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	2775058	2775058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	2775058	C	A	2775058	3	1	227	1	0	0	0	0	1	0	0	0	3839	740	26	4	225	4	CPXM1	20	2775058	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		2775058	60250462	111	14559											
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	56090811	56090811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	56090811	C	G	56090811	3	3	227	1	0	0	0	0	1	0	0	0	4003	913	32	4	876	4	CTCFL	20	56090811	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	53315753	56090811	6934709	112	14560											
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	62407208	62407208	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	62407208	G	A	62407208	2	1	227	1	0	0	0	0	0	0	0	1	17559	933	33	2		2	ZBTB46	20	62407208	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	6316397	62407208	618312	113	14561											
SLC25A1	6576	broad.mit.edu	37	22	19164390	19164390	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	19164390	G	A	19164390	2	1	227	1	0	0	0	0	0	0	0	1	14484	1049	37	1		1	SLC25A1	22	19164390	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08		19164390	32140176	114	14562											
PICK1	9463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	38470965	38470965	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	G	38470965	C	G	38470965	3	3	227	1	0	0	0	0	1	0	0	0	11888	854	30	4	1120	4	PICK1	22	38470965	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	19306575	38470965	12833601	115	14563											
MKL1	57591	hgsc.bcm.edu;broad.mit.edu	37	22	40814967	40814967	+	Missense_Mutation	SNP	G	G	A	rs199908950		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	40814967	G	A	40814967	3	1	227	1	0	0	0	0	1	0	0	0	9608	1059	37	1	1336	1	MKL1	22	40814967	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	2344002	40814967	10489599	116	14564											
PARVB	29780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	44564537	44564537	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	44564537	C	T	44564537	2	4	227	1	0	0	0	0	0	0	0	1	11476	581	21	2		2	PARVB	22	44564537	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3749570	44564537	6740029	117	14565											
GTSE1	51512	broad.mit.edu	37	22	46712115	46712115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	46712115	C	T	46712115	3	4	227	1	0	0	0	0	1	0	0	0	6892	623	22	2	1260	2	GTSE1	22	46712115	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	2147578	46712115	4592451	118	14566											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	46930992	46930992	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	46930992	G	A	46930992	2	1	227	1	0	0	0	0	0	0	0	1	3223	1140	40	1		1	CELSR1	22	46930992	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	218877	46930992	4373574	119	14567											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	123176469	123176469	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	T	123176469	C	T	123176469	4	4	227	1	0	0	0	0	0	1	0	0	15255	876	31	1	454	1	STAG2	23	123176469	Nonsense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		123176469	32094091	120	14568											
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	155232601	155232601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	A	155232601	G	A	155232601	3	1	227	1	0	0	0	0	1	0	0	0	7715	1058	37	1	65	1	IL9R	23	155232601	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	32056132	155232601	37959	121	14569											
S100PBP	64766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	33292114	33292114	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	-	33292114	A	-	33292114	7	5	228	1	0	1	0	1	0	0	0	0	13804	378	14	0	416	0	S100PBP	1	33292114	Frame_Shift_Del	DEL	A	TCGA-B3-8121-01A-21D-2396-08		33292114	215958507	1	14570											
ATP5F1	515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	112002161	112002161	+	Missense_Mutation	SNP	A	A	G	rs201457142		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	112002161	A	G	112002161	3	3	228	1	0	0	0	0	1	0	0	0	1152	449	16	3	618	3	ATP5F1	1	112002161	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	78710047	112002161	137248460	2	14571											
SLC16A1	6566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113460277	113460277	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	113460277	G	A	113460277	4	1	228	1	0	0	0	0	0	1	0	0	14415	1299	45	2	759	2	SLC16A1	1	113460277	Nonsense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	1458116	113460277	135790344	3	14572											
SNAPIN	23557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153631989	153631989	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	153631989	C	G	153631989	3	3	228	1	0	0	0	0	1	0	0	0	14852	565	20	4	266	4	SNAPIN	1	153631989	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	40171712	153631989	95618632	4	14573											
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32475306	32475307	+	Missense_Mutation	DNP	GC	GC	CT	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	CT	32475307	GC	CT	32475306	3	2	228	1	0	0	0	0	1	0	0	0	10476	1328	46	4	1471	4	NLRC4	2	32475306	Missense_Mutation	DNP	GC	TCGA-B3-8121-01A-21D-2396-08		32475306	210724067	5	14574											
TLX2	3196	hgsc.bcm.edu	37	2	74742182	74742182	+	Silent	SNP	C	C	G	rs115897631		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	74742182	C	G	74742182	2	3	228	1	0	0	0	0	0	0	0	1	15973	842	30	4		4	TLX2	2	74742182	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08	42266876	74742182	168457191	6	14575											
SLC20A1	6574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	113418129	113418129	+	Silent	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	113418129	G	A	113418129	2	1	228	1	0	0	0	0	0	0	0	1	14451	1277	45	2		2	SLC20A1	2	113418129	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	38675947	113418129	129781244	7	14576											
HAT1	8520	hgsc.bcm.edu	37	2	172848182	172848182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	172848182	C	A	172848182	3	1	228	1	0	0	0	0	1	0	0	0	6971	709	25	4	1218	4	HAT1	2	172848182	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	59430053	172848182	70351191	8	14577											
ZNF142	7701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219510938	219510938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	219510938	C	A	219510938	3	1	228	1	0	0	0	0	1	0	0	0	17743	796	28	4	3672	4	ZNF142	2	219510938	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	46662756	219510938	23688435	9	14578											
AP1S3	130340	hgsc.bcm.edu	37	2	224640715	224640715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	224640715	A	G	224640715	3	3	228	1	0	0	0	0	1	0	0	0	738	372	13	3	282	3	AP1S3	2	224640715	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	5129777	224640715	18558658	10	14579											
USP40	55230	hgsc.bcm.edu	37	2	234399860	234399860	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	234399860	C	G	234399860	3	3	228	1	0	0	0	0	1	0	0	0	17084	913	32	4	773	4	USP40	2	234399860	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	9759145	234399860	8799513	11	14580											
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	46944260	46944260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	46944260	T	C	46944260	3	2	228	1	0	0	0	0	1	0	0	0	12769	1406	49	3	1425	3	PTH1R	3	46944260	Missense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08		46944260	151078170	12	14581											
CCDC66	285331	hgsc.bcm.edu	37	3	56627106	56627106	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	56627106	G	C	56627106	3	2	228	1	0	0	0	0	1	0	0	0	2840	943	33	4	1075	4	CCDC66	3	56627106	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	9682846	56627106	141395324	13	14582											
CCDC66	285331	hgsc.bcm.edu	37	3	56651517	56651517	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	56651517	T	G	56651517	3	3	228	1	0	0	0	0	1	0	0	0	2840	1838	64	5	2275	5	CCDC66	3	56651517	Missense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08	24411	56651517	141370913	14	14583											
MINA	84864	hgsc.bcm.edu	37	3	97673274	97673274	+	Silent	SNP	G	G	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	97673274	G	T	97673274	2	4	228	1	0	0	0	0	0	0	0	1	9593	1219	43	4		4	MINA	3	97673274	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	41021757	97673274	100349156	15	14584	191	2									
MINA	84864	broad.mit.edu	37	3	97673276	97673276	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	-	97673276	C	-	97673276	7	5	228	1	0	1	0	1	0	0	0	0	9593	739	26	0	676	0	MINA	3	97673276	Frame_Shift_Del	DEL	C	TCGA-B3-8121-01A-21D-2396-08	2	97673276	100349154	16	14585	191	2									
RNF13	11342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	149678840	149678840	+	Silent	SNP	C	C	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	149678840	C	T	149678840	2	4	228	1	0	0	0	0	0	0	0	1	13450	842	30	2		2	RNF13	3	149678840	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08	52005564	149678840	48343590	17	14586											
EXOC1	55763	hgsc.bcm.edu	37	4	56765984	56765984	+	Silent	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	56765984	A	G	56765984	2	3	228	1	0	0	0	0	0	0	0	1	5303	11	1	3		3	EXOC1	4	56765984	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08		56765984	134388292	18	14587											
INPP4B	8821	hgsc.bcm.edu	37	4	143044565	143044565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	143044565	C	A	143044565	3	1	228	1	0	0	0	0	1	0	0	0	7760	710	25	4	905	4	INPP4B	4	143044565	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	86278581	143044565	48109711	19	14588											
ZDHHC11	79844	hgsc.bcm.edu;broad.mit.edu	37	5	837562	837562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	837562	A	C	837562	3	2	228	1	0	0	0	0	1	0	0	0	17613	101	4	5	448	5	ZDHHC11	5	837562	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		837562	180077698	20	14589											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5235247	5235247	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	5235247	C	G	5235247	3	3	228	1	0	0	0	0	1	0	0	0	261	709	25	4	2021	4	ADAMTS16	5	5235247	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	4397685	5235247	175680013	21	14590											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82850838	82850838	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	82850838	G	A	82850838	4	1	228	1	0	0	0	0	0	1	0	0	17150	1357	47	2	9758	2	VCAN	5	82850838	Nonsense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	77615591	82850838	98064422	22	14591											
HIST1H4B	8366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26027471	26027471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	26027471	G	C	26027471	3	2	228	1	0	0	0	0	1	0	0	0	7173	1058	37	4	305	4	HIST1H4B	6	26027471	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08		26027471	145087596	23	14592											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51924820	51924820	+	Missense_Mutation	SNP	A	A	C	rs143341567	alternate_allele	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	51924820	A	C	51924820	3	2	228	1	0	0	0	0	1	0	0	0	11978	14	1	5	11336	5	PKHD1	6	51924820	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	25897349	51924820	119190247	24	14593											
KCNQ5	56479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73905126	73905126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	73905126	A	G	73905126	3	3	228	1	0	0	0	0	1	0	0	0	8093	131	5	3	2903	3	KCNQ5	6	73905126	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	21980306	73905126	97209941	25	14594											
FAM46A	55603	hgsc.bcm.edu	37	6	82461775	82461775	+	Silent	SNP	G	G	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	82461775	G	T	82461775	2	4	228	1	0	0	0	0	0	0	0	1	5572	1074	38	4		4	FAM46A	6	82461775	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	8556649	82461775	88653292	26	14595											
RARS2	57038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	88231239	88231239	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	88231239	A	T	88231239	3	4	228	1	0	0	0	0	1	0	0	0	13072	330	12	5	794	5	RARS2	6	88231239	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	5769464	88231239	82883828	27	14596											
SEC63	11231	hgsc.bcm.edu	37	6	108227977	108227977	+	Silent	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	108227977	A	G	108227977	2	3	228	1	0	0	0	0	0	0	0	1	14018	349	13	3		3	SEC63	6	108227977	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08	19996738	108227977	62887090	28	14597											
IGFBP1	3484	broad.mit.edu	37	7	45932569	45932569	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	-	45932569	C	-	45932569	7	5	228	1	0	1	0	1	0	0	0	0	7585	855	30	0	673	0	IGFBP1	7	45932569	Frame_Shift_Del	DEL	C	TCGA-B3-8121-01A-21D-2396-08		45932569	113206094	29	14598											
CYP51A1	1595	broad.mit.edu;bcgsc.ca	37	7	91753101	91753107	+	Frame_Shift_Del	DEL	CTGTCTG	CTGTCTG	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	CTGTCTG	CTGTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	-	91753107	CTGTCTG	-	91753101	7	5	228	1	0	1	0	1	0	0	0	0	4197	564	20	0	712	0	CYP51A1	7	91753101	Frame_Shift_Del	DEL	CTGTCTG	TCGA-B3-8121-01A-21D-2396-08	45820532	91753101	67385562	30	14599	192	2									
CYP51A1	1595	bcgsc.ca	37	7	91753108	91753108	+	Missense_Mutation	SNP	C	C	A	rs140702410		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	91753108	C	A	91753108	3	1	228	1	0	0	0	0	1	0	0	0	4197	768	27	4	719	4	CYP51A1	7	91753108	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	7	91753108	67385555	31	14600	192	2									
TRIP6	7205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100465513	100465514	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	100465514	-	C	100465513	7	5	228	1	0	1	1	0	0	0	0	0	16571	1319	46	0	146	0	TRIP6	7	100465513	Frame_Shift_Ins	INS	-	TCGA-B3-8121-01A-21D-2396-08	8712405	100465513	58673150	32	14601											
MTBP	27085	hgsc.bcm.edu	37	8	121528430	121528430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	121528430	A	G	121528430	3	3	228	1	0	0	0	0	1	0	0	0	9919	86	3	3	2315	3	MTBP	8	121528430	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		121528430	24835592	33	14602											
CEP78	84131	broad.mit.edu	37	9	80866948	80866948	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	-	80866948	A	-	80866948	7	5	228	1	0	1	0	1	0	0	0	0	3264	117	5	0	1231	0	CEP78	9	80866948	Frame_Shift_Del	DEL	A	TCGA-B3-8121-01A-21D-2396-08		80866948	60346483	34	14603											
EGFL7	51162	hgsc.bcm.edu	37	9	139566442	139566442	+	Missense_Mutation	SNP	C	C	T	rs200483435		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	139566442	C	T	139566442	3	4	228	1	0	0	0	0	1	0	0	0	4966	652	23	1	727	1	EGFL7	9	139566442	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	58699494	139566442	1646989	35	14604											
FRMPD2	143162	hgsc.bcm.edu	37	10	49365382	49365382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	49365382	A	G	49365382	3	3	228	1	0	0	0	0	1	0	0	0	6065	246	9	3	20	3	FRMPD2	10	49365382	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		49365382	86169365	36	14605											
C10orf71	118461	hgsc.bcm.edu	37	10	50532033	50532033	+	Silent	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	50532033	G	A	50532033	2	1	228	1	0	0	0	0	0	0	0	1	1616	991	35	2		2	C10orf71	10	50532033	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	1166651	50532033	85002714	37	14606											
CCAR1	55749	hgsc.bcm.edu	37	10	70547739	70547739	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	70547739	T	G	70547739	4	3	228	1	0	0	0	0	0	1	0	0	2732	1764	61	5	3018	5	CCAR1	10	70547739	Nonsense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08	20015706	70547739	64987008	38	14607											
PAPSS2	9060	bcgsc.ca	37	10	89474790	89474790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	89474790	C	T	89474790	3	4	228	1	0	0	0	0	1	0	0	0	11442	739	26	2	710	2	PAPSS2	10	89474790	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	18927051	89474790	46059957	39	14608											
HELLS	3070	hgsc.bcm.edu	37	10	96356840	96356840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	96356840	G	T	96356840	3	4	228	1	0	0	0	0	1	0	0	0	7053	1020	36	4	2476	4	HELLS	10	96356840	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	6882050	96356840	39177907	40	14609											
CAPRIN2	65981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	30888129	30888129	+	Silent	SNP	C	C	T	rs145888176		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	30888129	C	T	30888129	2	4	228	1	0	0	0	0	0	0	0	1	2638	755	27	1		1	CAPRIN2	12	30888129	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08		30888129	102963766	41	14610											
EEA1	8411	hgsc.bcm.edu	37	12	93196321	93196322	+	Missense_Mutation	DNP	TT	TT	AG	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	AG	93196322	TT	AG	93196321	3	1	228	1	0	0	0	0	1	0	0	0	4923	1606	56	5	1750	5	EEA1	12	93196321	Missense_Mutation	DNP	TT	TCGA-B3-8121-01A-21D-2396-08	62308192	93196321	40655574	42	14611											
GIT2	9815	broad.mit.edu;bcgsc.ca	37	12	110385121	110385127	+	Frame_Shift_Del	DEL	TGGGAGA	TGGGAGA	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	TGGGAGA	TGGGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	-	110385127	TGGGAGA	-	110385121	7	5	228	1	0	1	0	1	0	0	0	0	6404	1799	63	0	722	0	GIT2	12	110385121	Frame_Shift_Del	DEL	TGGGAGA	TCGA-B3-8121-01A-21D-2396-08	17188800	110385121	23466774	43	14612											
RAN	5901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	131359114	131359114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	131359114	G	A	131359114	3	1	228	1	0	0	0	0	1	0	0	0	13037	1290	45	2	285	2	RAN	12	131359114	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	20973993	131359114	2492781	44	14613											
EP400	57634	hgsc.bcm.edu	37	12	132547147	132547147	+	Silent	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	132547147	G	A	132547147	2	1	228	1	0	0	0	0	0	0	0	1	5151	962	34	2		2	EP400	12	132547147	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	1188033	132547147	1304748	45	14614											
PCNX	22990	broad.mit.edu	37	14	71476434	71476434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	71476434	A	G	71476434	3	3	228	1	0	0	0	0	1	0	0	0	11598	130	5	3	2747	3	PCNX	14	71476434	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		71476434	35873106	46	14615											
POMT2	29954	hgsc.bcm.edu;broad.mit.edu	37	14	77765102	77765102	+	Silent	SNP	G	G	A	rs186690580		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	77765102	G	A	77765102	2	1	228	1	0	0	0	0	0	0	0	1	12253	1136	40	1		1	POMT2	14	77765102	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	6288668	77765102	29584438	47	14616											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	30008820	30008820	+	Silent	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	30008820	A	G	30008820	2	3	228	1	0	0	0	0	0	0	0	1	15941	59	3	3		3	TJP1	15	30008820	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08		30008820	72522572	48	14617											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	30065529	30065529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	30065529	G	T	30065529	3	4	228	1	0	0	0	0	1	0	0	0	15941	942	33	4	5234	4	TJP1	15	30065529	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	56709	30065529	72465863	49	14618											
PRTG	283659	broad.mit.edu	37	15	55931963	55931963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	55931963	G	A	55931963	3	1	228	1	0	0	0	0	1	0	0	0	12648	1261	44	2	1283	2	PRTG	15	55931963	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	25866434	55931963	46599429	50	14619											
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058944	79058944	+	Silent	SNP	A	A	T	rs140097166		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	79058944	A	T	79058944	2	4	228	1	0	0	0	0	0	0	0	1	271	175	7	5		5	ADAMTS7	15	79058944	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08	23126981	79058944	23472448	51	14620											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	2059674	T	C	2059674	3	2	228	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08		2059674	88295079	52	14621											
ZNF594	84622	hgsc.bcm.edu	37	17	5085361	5085361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	5085361	C	T	5085361	3	4	228	1	0	0	0	0	1	0	0	0	18036	710	25	2	236	2	ZNF594	17	5085361	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08		5085361	76109849	53	14622											
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	60484528	60484528	+	Silent	SNP	T	T	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	60484528	T	C	60484528	2	2	228	1	0	0	0	0	0	0	0	1	4937	1490	52	3		3	EFCAB3	17	60484528	Silent	SNP	T	TCGA-B3-8121-01A-21D-2396-08	55399167	60484528	20710682	54	14623											
C17orf80	55028	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	71231747	71231747	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	71231747	T	G	71231747	4	3	228	1	0	0	0	0	0	1	0	0	1887	1442	50	5	128	5	C17orf80	17	71231747	Nonsense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08	10747219	71231747	9963463	55	14624											
KLHL14	57565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	30350134	30350134	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	30350134	A	C	30350134	3	2	228	1	0	0	0	0	1	0	0	0	8377	391	14	5	1497	5	KLHL14	18	30350134	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		30350134	47727114	56	14625											
ATP5A1	498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	43671697	43671697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	43671697	A	G	43671697	3	3	228	1	0	0	0	0	1	0	0	0	1147	188	7	3	1441	3	ATP5A1	18	43671697	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	13321563	43671697	34405551	57	14626											
EPOR	2057	hgsc.bcm.edu	37	19	11491644	11491644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	11491644	A	C	11491644	3	2	228	1	0	0	0	0	1	0	0	0	5191	188	7	5	795	5	EPOR	19	11491644	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		11491644	47637339	58	14627											
TSHZ3	57616	hgsc.bcm.edu	37	19	31770237	31770237	+	Silent	SNP	A	A	G	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	G	31770237	A	G	31770237	2	3	228	1	0	0	0	0	0	0	0	1	16637	388	14	3		3	TSHZ3	19	31770237	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08	20278593	31770237	27358746	59	14628											
ANKRD27	84079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	33132944	33132944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	33132944	G	A	33132944	3	1	228	1	0	0	0	0	1	0	0	0	655	942	33	2	2342	2	ANKRD27	19	33132944	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	1362707	33132944	25996039	60	14629											
CAPN12	147968	hgsc.bcm.edu	37	19	39226899	39226899	+	Silent	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	39226899	G	A	39226899	2	1	228	1	0	0	0	0	0	0	0	1	2627	1103	39	1		1	CAPN12	19	39226899	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	6093955	39226899	19902084	61	14630											
LILRB3	11025	hgsc.bcm.edu	37	19	54725773	54725773	+	Silent	SNP	T	T	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	54725773	T	C	54725773	2	2	228	1	0	0	0	0	0	0	0	1	8799	1451	51	3		3	LILRB3	19	54725773	Silent	SNP	T	TCGA-B3-8121-01A-21D-2396-08	15498874	54725773	4403210	62	14631											
LILRA5	353514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54819027	54819027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	A	54819027	G	A	54819027	3	1	228	1	0	0	0	0	1	0	0	0	8795	971	34	2	188	2	LILRA5	19	54819027	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	93254	54819027	4309956	63	14632											
ZNF341	84905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	32345059	32345060	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	C	32345060	-	C	32345059	7	5	228	1	0	1	1	0	0	0	0	0	17869	275	10	0	869	0	ZNF341	20	32345059	Frame_Shift_Ins	INS	-	TCGA-B3-8121-01A-21D-2396-08		32345059	30680461	64	14633											
RBPJL	11317	hgsc.bcm.edu	37	20	43940524	43940524	+	Missense_Mutation	SNP	G	G	T	rs35472429		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	43940524	G	T	43940524	3	4	228	1	0	0	0	0	1	0	0	0	13175	1174	41	4	392	4	RBPJL	20	43940524	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	11595465	43940524	19084996	65	14634											
NUP50	10762	broad.mit.edu;bcgsc.ca	37	22	45574449	45574449	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	-	45574449	T	-	45574449	7	5	228	1	0	1	0	1	0	0	0	0	10773	1609	56	0	685	0	NUP50	22	45574449	Frame_Shift_Del	DEL	T	TCGA-B3-8121-01A-21D-2396-08		45574449	5730117	66	14635											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53589174	53589174	+	Silent	SNP	C	C	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	53589174	C	T	53589174	2	4	228	1	0	0	0	0	0	0	0	1	7468	680	24	2		2	HUWE1	23	53589174	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08		53589174	101681386	67	14636											
NAP1L3	4675	ucsc.edu	37	X	92927724	92927724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	92927724	C	T	92927724	3	4	228	1	0	0	0	0	1	0	0	0	10165	922	32	2	944	2	NAP1L3	23	92927724	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	39338550	92927724	62342836	68	14637											
NLGN4Y	22829	hgsc.bcm.edu	37	Y	16952767	16952767	+	Silent	SNP	C	C	T	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	T	16952767	C	T	16952767	2	4	228	1	0	0	0	0	0	0	0	1	10472	668	24	2		2	NLGN4Y	24	16952767	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08		16952767	42420799	69	14638											
AGMAT	79814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	15909873	15909873	+	Missense_Mutation	SNP	A	A	G	rs148899500		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	G	15909873	A	G	15909873	3	3	229	1	0	0	0	0	1	0	0	0	385	333	12	3	792	3	AGMAT	1	15909873	Missense_Mutation	SNP	A	TCGA-B4-5377-01A-01D-1501-10		15909873	233340748	1	14639											
NBPF10	100132406	broad.mit.edu	37	1	146398422	146398422	+	Silent	SNP	G	A	A	rs61804605		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	146398422	A	A	146398422	2	1	229	1	0	0	0	0	0	0	0	1	10200	1131	39	1		1	NBPF10	1	146398422	Silent	SNP	G	TCGA-B4-5377-01A-01D-1501-10	130488549	146398422	102852199	2	14640											
HRNR	388697	broad.mit.edu	37	1	152192654	152192654	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	152192654	A	A	152192654	3	1	229	1	0	0	0	0	1	0	0	0	7366	739	26	4	7105	4	HRNR	1	152192654	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10	5794232	152192654	97057967	3	14641											
CLK1	1195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	201725966	201725966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	201725966	G	A	201725966	3	1	229	1	0	0	0	0	1	0	0	0	3538	1377	48	2	1113	2	CLK1	2	201725966	Missense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10		201725966	41473407	4	14642											
DNER	92737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	230411681	230411681	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	230411681	G	T	230411681	4	4	229	1	0	0	0	0	0	1	0	0	4669	1311	46	4	1274	4	DNER	2	230411681	Nonsense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10	28685715	230411681	12787692	5	14643											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu	37	3	52692333	52692333	+	Splice_Site	SNP	T	T	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	52692333	T	A	52692333	5	1	229	1	0	0	0	0	0	0	1	0	11498	1594	55	5	4477	5	PBRM1	3	52692333	Splice_Site	SNP	T	TCGA-B4-5377-01A-01D-1501-10		52692333	145330097	6	14644											
ROBO2	6092	broad.mit.edu;ucsc.edu	37	3	77651362	77651362	+	Silent	SNP	T	C	C	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	C	77651362	C	C	77651362	2	2	229	1	0	0	0	0	0	0	0	1	13527	1478	51	3		3	ROBO2	3	77651362	Silent	SNP	T	TCGA-B4-5377-01A-01D-1501-10	24959029	77651362	120371068	7	14645											
ASTE1	28990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130743620	130743620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	130743620	G	T	130743620	3	4	229	1	0	0	0	0	1	0	0	0	1062	962	34	4	1524	4	ASTE1	3	130743620	Missense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10	53092258	130743620	67278810	8	14646											
SIAH2	6478	broad.mit.edu	37	3	150460088	150460088	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	150460088	T	T	150460088	3	4	229	1	0	0	0	0	1	0	0	0	14313	652	23	1	163	1	SIAH2	3	150460088	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10	19716468	150460088	47562342	9	14647											
MED12L	116931	broad.mit.edu;ucsc.edu	37	3	151134124	151134124	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	-	151134124	-	-	151134124	7	5	229	1	0	1	0	1	0	0	0	0	9436	739	26	0	6379	0	MED12L	3	151134124	Frame_Shift_Del	DEL	C	TCGA-B4-5377-01A-01D-1501-10	674036	151134124	46888306	10	14648											
IFT80	57560	broad.mit.edu;ucsc.edu	37	3	160025463	160025463	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	160025463	A	A	160025463	3	1	229	1	0	0	0	0	1	0	0	0	7571	478	17	4	1313	4	IFT80	3	160025463	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10	8891339	160025463	37996967	11	14649											
ZBBX	79740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	167045872	167045872	+	Silent	SNP	A	A	G	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	G	167045872	A	G	167045872	2	3	229	1	0	0	0	0	0	0	0	1	17528	378	14	3		3	ZBBX	3	167045872	Silent	SNP	A	TCGA-B4-5377-01A-01D-1501-10	7020409	167045872	30976558	12	14650											
CLDN16	10686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	190106143	190106143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	190106143	G	T	190106143	3	4	229	1	0	0	0	0	1	0	0	0	3479	1087	38	4	237	4	CLDN16	3	190106143	Missense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10	23060271	190106143	7916287	13	14651											
HSPA4L	22824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	128725181	128725181	+	Silent	SNP	A	A	G	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	G	128725181	A	G	128725181	2	3	229	1	0	0	0	0	0	0	0	1	7420	40	2	3		3	HSPA4L	4	128725181	Silent	SNP	A	TCGA-B4-5377-01A-01D-1501-10		128725181	62429095	14	14652											
ZCCHC9	84240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	80600728	80600728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	G	80600728	A	G	80600728	3	3	229	1	0	0	0	0	1	0	0	0	17607	101	4	3	154	3	ZCCHC9	5	80600728	Missense_Mutation	SNP	A	TCGA-B4-5377-01A-01D-1501-10		80600728	100314532	15	14653											
PJA2	9867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	108717359	108717359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	108717359	C	A	108717359	3	1	229	1	0	0	0	0	1	0	0	0	11969	855	30	4	2081	4	PJA2	5	108717359	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10	28116631	108717359	72197901	16	14654											
GABRG2	2566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	161580106	161580106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	161580106	C	T	161580106	3	4	229	1	0	0	0	0	1	0	0	0	6179	507	18	2	1322	2	GABRG2	5	161580106	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10	52862747	161580106	19335154	17	14655											
GRK6	2870	broad.mit.edu;hgsc.bcm.edu	37	5	176863239	176863239	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	C	176863239	A	C	176863239	3	2	229	1	0	0	0	0	1	0	0	0	6800	449	16	5	1269	5	GRK6	5	176863239	Missense_Mutation	SNP	A	TCGA-B4-5377-01A-01D-1501-10	15283133	176863239	4052021	18	14656											
POMZP3	22932	broad.mit.edu	37	7	76247520	76247520	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	G	76247520	G	G	76247520	3	3	229	1	0	0	0	0	1	0	0	0	12254	710	25	4	257	4	POMZP3	7	76247520	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10		76247520	82891143	19	14657											
SEMA3D	223117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	84642124	84642124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	84642124	A	T	84642124	3	4	229	1	0	0	0	0	1	0	0	0	14040	333	12	5	603	5	SEMA3D	7	84642124	Missense_Mutation	SNP	A	TCGA-B4-5377-01A-01D-1501-10	8394604	84642124	74496539	20	14658											
C7orf23	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	86827282	86827282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	G	86827282	A	G	86827282	3	3	229	1	0	0	0	0	1	0	0	0	2381	131	5	3	155	3	C7orf23	7	86827282	Missense_Mutation	SNP	A	TCGA-B4-5377-01A-01D-1501-10	2185158	86827282	72311381	21	14659											
PRSS55	203074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	10396087	10396087	+	Silent	SNP	C	C	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	10396087	C	A	10396087	2	1	229	1	0	0	0	0	0	0	0	1	12644	610	22	4		4	PRSS55	8	10396087	Silent	SNP	C	TCGA-B4-5377-01A-01D-1501-10		10396087	135967935	22	14660											
PCM1	5108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17814231	17814231	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	17814231	G	T	17814231	4	4	229	1	0	0	0	0	0	1	0	0	11591	1291	45	4	1625	4	PCM1	8	17814231	Nonsense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10	7418144	17814231	128549791	23	14661	193	2									
PCM1	5108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17814232	17814232	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	17814232	A	T	17814232	3	4	229	1	0	0	0	0	1	0	0	0	11591	246	9	5	1626	5	PCM1	8	17814232	Missense_Mutation	SNP	A	TCGA-B4-5377-01A-01D-1501-10	1	17814232	128549790	24	14662	193	2									
PRDM14	63978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	70981667	70981667	+	Silent	SNP	A	A	G	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	G	70981667	A	G	70981667	2	3	229	1	0	0	0	0	0	0	0	1	12465	41	2	3		3	PRDM14	8	70981667	Silent	SNP	A	TCGA-B4-5377-01A-01D-1501-10	53167435	70981667	75382355	25	14663											
KCNB2	9312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	73480273	73480273	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	73480273	T	A	73480273	3	1	229	1	0	0	0	0	1	0	0	0	8020	1841	64	5	306	5	KCNB2	8	73480273	Missense_Mutation	SNP	T	TCGA-B4-5377-01A-01D-1501-10	2498606	73480273	72883749	26	14664											
RIMS2	9699	broad.mit.edu;ucsc.edu	37	8	104513249	104513249	+	Silent	SNP	T	C	C	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	C	104513249	C	C	104513249	2	2	229	1	0	0	0	0	0	0	0	1	13381	1403	49	3		3	RIMS2	8	104513249	Silent	SNP	T	TCGA-B4-5377-01A-01D-1501-10	31032976	104513249	41850773	27	14665											
COL22A1	169044	hgsc.bcm.edu;ucsc.edu	37	8	139638478	139638482	+	Frame_Shift_Del	DEL	TTCTT	TTCTT	-	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	TTCTT	TTCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	-	139638482	TTCTT	-	139638478	7	5	229	1	0	1	0	1	0	0	0	0	3683	1606	56	0	1268	0	COL22A1	8	139638478	Frame_Shift_Del	DEL	TTCTT	TCGA-B4-5377-01A-01D-1501-10	35125229	139638478	6725544	28	14666											
HEATR7A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145275539	145275539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	145275539	C	T	145275539	3	4	229	1	0	0	0	0	1	0	0	0	7041	913	32	2	1352	2	HEATR7A	8	145275539	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10	5637061	145275539	1088483	29	14667											
TNC	3371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	117803275	117803275	+	Silent	SNP	G	G	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	117803275	G	T	117803275	2	4	229	1	0	0	0	0	0	0	0	1	16282	1280	45	4		4	TNC	9	117803275	Silent	SNP	G	TCGA-B4-5377-01A-01D-1501-10		117803275	23410156	30	14668											
MCM10	55388	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	13213138	13213138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	13213138	C	T	13213138	3	4	229	1	0	0	0	0	1	0	0	0	9392	739	26	2	230	2	MCM10	10	13213138	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10		13213138	122321609	31	14669											
RPS24	6229	broad.mit.edu	37	10	79814397	79814397	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	79814397	T	T	79814397	4	4	229	1	0	0	0	0	0	1	0	0	13648	711	25	2	556	2	RPS24	10	79814397	Nonsense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10	66601259	79814397	55720350	32	14670											
TBC1D12	23232	broad.mit.edu	37	10	96290995	96290995	+	Silent	SNP	T	C	C	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	C	96290995	C	C	96290995	2	2	229	1	0	0	0	0	0	0	0	1	15613	1432	50	3		3	TBC1D12	10	96290995	Silent	SNP	T	TCGA-B4-5377-01A-01D-1501-10	16476598	96290995	39243752	33	14671											
WDR74	54663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62601147	62601147	+	Splice_Site	SNP	C	C	A	rs189126082	by1000genomes;alternate_allele	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	62601147	C	A	62601147	5	1	229	1	0	0	0	0	0	0	1	0	17336	695	24	4	244	4	WDR74	11	62601147	Splice_Site	SNP	C	TCGA-B4-5377-01A-01D-1501-10		62601147	72405369	34	14672											
CTSW	1521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65648930	65648930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	65648930	G	T	65648930	3	4	229	1	0	0	0	0	1	0	0	0	4044	1194	42	4	235	4	CTSW	11	65648930	Missense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10	3047783	65648930	69357586	35	14673											
KIAA0528	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	22676365	22676365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	22676365	C	T	22676365	3	4	229	1	0	0	0	0	1	0	0	0	8189	826	29	2	2283	2	KIAA0528	12	22676365	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10		22676365	111175530	36	14674											
DIP2B	57609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	51092926	51092926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	G	51092926	T	G	51092926	3	3	229	1	0	0	0	0	1	0	0	0	4530	1551	54	5	2340	5	DIP2B	12	51092926	Missense_Mutation	SNP	T	TCGA-B4-5377-01A-01D-1501-10	28416561	51092926	82758969	37	14675											
MYL2	4633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	111351119	111351119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	111351119	G	T	111351119	3	4	229	1	0	0	0	0	1	0	0	0	10054	1000	35	4	228	4	MYL2	12	111351119	Missense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10	60258193	111351119	22500776	38	14676											
PARP4	143	broad.mit.edu;ucsc.edu	37	13	25075850	25075850	+	Silent	SNP	T	C	C	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	C	25075850	C	C	25075850	2	2	229	1	0	0	0	0	0	0	0	1	11470	1664	58	3		3	PARP4	13	25075850	Silent	SNP	T	TCGA-B4-5377-01A-01D-1501-10		25075850	90094028	39	14677											
XYLT1	64131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	17211800	17211800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	17211800	G	A	17211800	3	1	229	1	0	0	0	0	1	0	0	0	17475	1116	39	1	627	1	XYLT1	16	17211800	Missense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10		17211800	73142953	40	14678											
DNAH3	55567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	21098199	21098199	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	C	21098199	G	C	21098199	3	2	229	1	0	0	0	0	1	0	0	0	4605	1232	43	4	9677	4	DNAH3	16	21098199	Missense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10	3886399	21098199	69256554	41	14679											
BLMH	642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	28598331	28598331	+	Silent	SNP	T	T	C	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	C	28598331	T	C	28598331	2	2	229	1	0	0	0	0	0	0	0	1	1446	1683	59	3		3	BLMH	17	28598331	Silent	SNP	T	TCGA-B4-5377-01A-01D-1501-10		28598331	52596879	42	14680											
RFFL	117584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33348596	33348596	+	Silent	SNP	G	G	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	33348596	G	A	33348596	2	1	229	1	0	0	0	0	0	0	0	1	13263	962	34	2		2	RFFL	17	33348596	Silent	SNP	G	TCGA-B4-5377-01A-01D-1501-10	4750265	33348596	47846614	43	14681											
SMARCA4	6597	hgsc.bcm.edu	37	19	11106894	11106894	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	C	11106894	A	C	11106894	3	2	229	1	0	0	0	0	1	0	0	0	14783	69	3	5	1633	5	SMARCA4	19	11106894	Missense_Mutation	SNP	A	TCGA-B4-5377-01A-01D-1501-10		11106894	48022089	44	14682											
COMP	1311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18901411	18901411	+	Silent	SNP	G	G	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	18901411	G	A	18901411	2	1	229	1	0	0	0	0	0	0	0	1	3726	1280	45	2		2	COMP	19	18901411	Silent	SNP	G	TCGA-B4-5377-01A-01D-1501-10	7794517	18901411	40227572	45	14683											
FBXO27	126433	hgsc.bcm.edu;ucsc.edu	37	19	39521925	39521925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	T	39521925	C	T	39521925	3	4	229	1	0	0	0	0	1	0	0	0	5744	855	30	2	467	2	FBXO27	19	39521925	Missense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10	20620514	39521925	19607058	46	14684											
LMTK3	114783	broad.mit.edu	37	19	49001136	49001136	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	-	49001136	-	-	49001136	7	5	229	1	0	1	0	1	0	0	0	0	8867	304	11	0	1212	0	LMTK3	19	49001136	Frame_Shift_Del	DEL	A	TCGA-B4-5377-01A-01D-1501-10	9479211	49001136	10127847	47	14685											
ZNF175	7728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52090780	52090780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	52090780	G	A	52090780	3	1	229	1	0	0	0	0	1	0	0	0	17757	1203	42	2	1210	2	ZNF175	19	52090780	Missense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10	3089644	52090780	7038203	48	14686											
COL6A2	1292	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47533975	47533975	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	47533975	C	A	47533975	4	1	229	1	0	0	0	0	0	1	0	0	3702	518	18	4	803	4	COL6A2	21	47533975	Nonsense_Mutation	SNP	C	TCGA-B4-5377-01A-01D-1501-10		47533975	595920	49	14687											
PRPS2	5634	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	12827407	12827407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a615b02d-fd18-47ef-bd66-6dba56de6981	85d470b3-45ce-4267-ab98-ce6cc5ca43d4	A	12827407	G	A	12827407	3	1	229	1	0	0	0	0	1	0	0	0	12590	1203	42	2	380	2	PRPS2	23	12827407	Missense_Mutation	SNP	G	TCGA-B4-5377-01A-01D-1501-10		12827407	142443153	50	14688											
MTOR	2475	broad.mit.edu	37	1	11188164	11188164	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	11188164	G	C	11188164	3	2	230	1	0	0	0	0	1	0	0	0	9961	1377	48	4	1783	4	MTOR	1	11188164	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08		11188164	238062457	1	14689											
HIST2H2AB	317772	broad.mit.edu	37	1	149859298	149859298	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	149859298	C	G	149859298	3	3	230	1	0	0	0	0	1	0	0	0	7184	893	31	4	227	4	HIST2H2AB	1	149859298	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	138671134	149859298	99391323	2	14690											
PGLYRP4	57115	broad.mit.edu	37	1	153318667	153318667	+	Splice_Site	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	153318667	C	T	153318667	5	4	230	1	0	0	0	0	0	0	1	0	11803	521	18	2	1099	2	PGLYRP4	1	153318667	Splice_Site	SNP	C	TCGA-B4-5832-01A-11D-1669-08	3459369	153318667	95931954	3	14691											
ARHGAP30	257106	broad.mit.edu	37	1	161018367	161018367	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	-	161018367	C	-	161018367	7	5	230	1	0	1	0	1	0	0	0	0	879	855	30	0	865	0	ARHGAP30	1	161018367	Frame_Shift_Del	DEL	C	TCGA-B4-5832-01A-11D-1669-08	7699700	161018367	88232254	4	14692											
SH2D1B	117157	broad.mit.edu	37	1	162381707	162381707	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	162381707	C	T	162381707	3	4	230	1	0	0	0	0	1	0	0	0	14244	893	31	1	314	1	SH2D1B	1	162381707	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	1363340	162381707	86868914	5	14693											
PRG4	10216	broad.mit.edu	37	1	186276959	186276959	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	186276959	A	G	186276959	3	3	230	1	0	0	0	0	1	0	0	0	12491	304	11	3	2130	3	PRG4	1	186276959	Missense_Mutation	SNP	A	TCGA-B4-5832-01A-11D-1669-08	23895252	186276959	62973662	6	14694											
KCNH1	3756	broad.mit.edu	37	1	211093085	211093085	+	Silent	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	211093085	C	T	211093085	2	4	230	1	0	0	0	0	0	0	0	1	8038	523	19	1		1	KCNH1	1	211093085	Silent	SNP	C	TCGA-B4-5832-01A-11D-1669-08	24816126	211093085	38157536	7	14695											
PTPN14	5784	broad.mit.edu	37	1	214557324	214557324	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	214557324	C	A	214557324	3	1	230	1	0	0	0	0	1	0	0	0	12794	797	28	4	1717	4	PTPN14	1	214557324	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	3464239	214557324	34693297	8	14696											
USH2A	7399	broad.mit.edu	37	1	215799123	215799123	+	Nonstop_Mutation	SNP	T	T	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	215799123	T	G	215799123	4	3	230	1	0	0	0	0	0	0	0	0	17048	1848	64	5	3	5	USH2A	1	215799123	Nonstop_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08	1241799	215799123	33451498	9	14697											
NLRP3	114548	broad.mit.edu	37	1	247593009	247593009	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	247593009	T	C	247593009	3	2	230	1	0	0	0	0	1	0	0	0	10485	1696	59	3	2293	3	NLRP3	1	247593009	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08	31793886	247593009	1657612	10	14698											
OR2T33	391195	broad.mit.edu	37	1	248436253	248436253	+	Nonsense_Mutation	SNP	G	G	C	rs145618749	by1000genomes	TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	248436253	G	C	248436253	4	2	230	1	0	0	0	0	0	1	0	0	11031	1372	48	4	101	4	OR2T33	1	248436253	Nonsense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	843244	248436253	814368	11	14699											
CCDC88A	55704	broad.mit.edu	37	2	55561665	55561665	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	55561665	T	G	55561665	3	3	230	1	0	0	0	0	1	0	0	0	2865	1838	64	5	3395	5	CCDC88A	2	55561665	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08		55561665	187637708	12	14700											
REV1	51455	broad.mit.edu	37	2	100019482	100019482	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	100019482	C	T	100019482	3	4	230	1	0	0	0	0	1	0	0	0	13252	681	24	2	517	2	REV1	2	100019482	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	44457817	100019482	143179891	13	14701											
HNMT	3176	broad.mit.edu	37	2	138771555	138771555	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	138771555	C	G	138771555	3	3	230	1	0	0	0	0	1	0	0	0	7262	565	20	4	974	4	HNMT	2	138771555	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	38752073	138771555	104427818	14	14702											
ALS2CR11	151254	broad.mit.edu	37	2	202438995	202438995	+	Silent	SNP	G	G	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	202438995	G	T	202438995	2	4	230	1	0	0	0	0	0	0	0	1	552	929	33	4		4	ALS2CR11	2	202438995	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08	63667440	202438995	40760378	15	14703											
PIKFYVE	200576	broad.mit.edu	37	2	209190731	209190731	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	209190731	T	G	209190731	3	3	230	1	0	0	0	0	1	0	0	0	11931	1609	56	5	3281	5	PIKFYVE	2	209190731	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08	6751736	209190731	34008642	16	14704											
ERBB4	2066	broad.mit.edu	37	2	212615417	212615417	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	212615417	T	C	212615417	3	2	230	1	0	0	0	0	1	0	0	0	5211	1464	51	3	3453	3	ERBB4	2	212615417	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08	3424686	212615417	30583956	17	14705											
VHL	7428	broad.mit.edu	37	3	10183787	10183787	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	10183787	C	A	10183787	3	1	230	1	0	0	0	0	1	0	0	0	17174	739	26	4	258	4	VHL	3	10183787	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08		10183787	187838643	18	14706											
SEC22C	9117	broad.mit.edu	37	3	42602763	42602763	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	42602763	C	T	42602763	4	4	230	1	0	0	0	0	0	1	0	0	14003	740	26	2	601	2	SEC22C	3	42602763	Nonsense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	32418976	42602763	155419667	19	14707											
SETD2	29072	broad.mit.edu	37	3	47143034	47143034	+	Silent	SNP	G	G	A	rs139879059	by1000genomes	TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	47143034	G	A	47143034	2	1	230	1	0	0	0	0	0	0	0	1	14144	1136	40	1		1	SETD2	3	47143034	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08	4540271	47143034	150879396	20	14708											
BSN	8927	broad.mit.edu	37	3	49699740	49699740	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	49699740	A	G	49699740	3	3	230	1	0	0	0	0	1	0	0	0	1532	449	16	3	10484	3	BSN	3	49699740	Missense_Mutation	SNP	A	TCGA-B4-5832-01A-11D-1669-08	2556706	49699740	148322690	21	14709											
PBRM1	55193	broad.mit.edu	37	3	52637711	52637712	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	52637712	-	A	52637711	7	5	230	1	0	1	1	0	0	0	0	0	11498	1299	45	0	2351	0	PBRM1	3	52637711	Frame_Shift_Ins	INS	-	TCGA-B4-5832-01A-11D-1669-08	2937971	52637711	145384719	22	14710											
PBRM1	55193	broad.mit.edu	37	3	52713603	52713603	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	52713603	G	A	52713603	3	1	230	1	0	0	0	0	1	0	0	0	11498	1348	47	2	4895	2	PBRM1	3	52713603	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	75892	52713603	145308827	23	14711											
IGSF10	285313	broad.mit.edu	37	3	151171562	151171562	+	Splice_Site	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	151171562	C	T	151171562	5	4	230	1	0	0	0	0	0	0	1	0	7604	521	18	2	7610	2	IGSF10	3	151171562	Splice_Site	SNP	C	TCGA-B4-5832-01A-11D-1669-08	98457959	151171562	46850868	24	14712											
SST	6750	broad.mit.edu	37	3	187386909	187386909	+	Silent	SNP	G	G	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	187386909	G	T	187386909	2	4	230	1	0	0	0	0	0	0	0	1	15208	1124	39	4		4	SST	3	187386909	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08	36215347	187386909	10635521	25	14713											
TACC3	10460	broad.mit.edu	37	4	1729915	1729915	+	Silent	SNP	A	A	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	1729915	A	G	1729915	2	3	230	1	0	0	0	0	0	0	0	1	15515	291	11	3		3	TACC3	4	1729915	Silent	SNP	A	TCGA-B4-5832-01A-11D-1669-08		1729915	189424361	26	14714											
LIMCH1	22998	broad.mit.edu	37	4	41687773	41687774	+	In_Frame_Ins	INS	-	-	GAT			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	GAT	41687774	-	GAT	41687773	7	5	230	1	0	1	1	0	0	0	0	0	8804	69	3	0	2980	0	LIMCH1	4	41687773	In_Frame_Ins	INS	-	TCGA-B4-5832-01A-11D-1669-08	39957858	41687773	149466503	27	14715											
GABRA2	2555	broad.mit.edu	37	4	46314597	46314597	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	46314597	C	A	46314597	3	1	230	1	0	0	0	0	1	0	0	0	6168	623	22	4	987	4	GABRA2	4	46314597	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	4626824	46314597	144839679	28	14716											
CCDC158	339965	broad.mit.edu	37	4	77274325	77274325	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	77274325	T	C	77274325	3	2	230	1	0	0	0	0	1	0	0	0	2792	1783	62	3	985	3	CCDC158	4	77274325	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08	30959728	77274325	113879951	29	14717											
VEGFC	7424	broad.mit.edu	37	4	177632795	177632795	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	177632795	T	G	177632795	3	3	230	1	0	0	0	0	1	0	0	0	17164	1493	52	5	716	5	VEGFC	4	177632795	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08	100358470	177632795	13521481	30	14718											
RXFP3	51289	broad.mit.edu	37	5	33937155	33937155	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	33937155	T	C	33937155	3	2	230	1	0	0	0	0	1	0	0	0	13774	1522	53	3	312	3	RXFP3	5	33937155	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08		33937155	146978105	31	14719											
EMB	133418	broad.mit.edu	37	5	49707089	49707089	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	49707089	G	T	49707089	3	4	230	1	0	0	0	0	1	0	0	0	5087	1386	48	4	686	4	EMB	5	49707089	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	15769934	49707089	131208171	32	14720											
CDYL	9425	broad.mit.edu	37	6	4935754	4935754	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	4935754	T	C	4935754	3	2	230	1	0	0	0	0	1	0	0	0	3187	1435	50	3	707	3	CDYL	6	4935754	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08		4935754	166179313	33	14721											
SRPK1	6732	broad.mit.edu	37	6	35856615	35856615	+	Silent	SNP	T	T	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	35856615	T	C	35856615	2	2	230	1	0	0	0	0	0	0	0	1	15171	1567	55	3		3	SRPK1	6	35856615	Silent	SNP	T	TCGA-B4-5832-01A-11D-1669-08	30920861	35856615	135258452	34	14722											
GPR116	221395	broad.mit.edu	37	6	46826442	46826442	+	Silent	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	46826442	G	A	46826442	2	1	230	1	0	0	0	0	0	0	0	1	6640	987	35	2		2	GPR116	6	46826442	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08	10969827	46826442	124288625	35	14723											
RHAG	6005	broad.mit.edu	37	6	49604371	49604371	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	49604371	G	C	49604371	3	2	230	1	0	0	0	0	1	0	0	0	13328	1000	35	4	1114	4	RHAG	6	49604371	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	2777929	49604371	121510696	36	14724											
HMGCLL1	54511	broad.mit.edu	37	6	55381307	55381307	+	Splice_Site	SNP	G	G	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	55381307	G	T	55381307	5	4	230	1	0	0	0	0	0	0	1	0	7237	985	34	4	654	4	HMGCLL1	6	55381307	Splice_Site	SNP	G	TCGA-B4-5832-01A-11D-1669-08	5776936	55381307	115733760	37	14725											
ZNF451	26036	broad.mit.edu	37	6	57013119	57013119	+	Silent	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	57013119	C	T	57013119	2	4	230	1	0	0	0	0	0	0	0	1	17934	796	28	2		2	ZNF451	6	57013119	Silent	SNP	C	TCGA-B4-5832-01A-11D-1669-08	1631812	57013119	114101948	38	14726											
ENPP3	5169	broad.mit.edu	37	6	131958572	131958572	+	Silent	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	131958572	C	T	131958572	2	4	230	1	0	0	0	0	0	0	0	1	5133	477	17	2		2	ENPP3	6	131958572	Silent	SNP	C	TCGA-B4-5832-01A-11D-1669-08	74945453	131958572	39156495	39	14727											
NXPH1	30010	broad.mit.edu	37	7	8790743	8790743	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	8790743	T	C	8790743	3	2	230	1	0	0	0	0	1	0	0	0	10797	1667	58	3	166	3	NXPH1	7	8790743	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08		8790743	150347920	40	14728											
CREB5	9586	broad.mit.edu	37	7	28848987	28848987	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	28848987	G	C	28848987	3	2	230	1	0	0	0	0	1	0	0	0	3862	1175	41	4	1295	4	CREB5	7	28848987	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	20058244	28848987	130289676	41	14729											
LIMK1	3984	broad.mit.edu	37	7	73526304	73526310	+	Frame_Shift_Del	DEL	CTCCCAC	CTCCCAC	-	rs150858705		TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	-	73526310	CTCCCAC	-	73526304	7	5	230	1	0	1	0	1	0	0	0	0	8808	564	20	0	1432	0	LIMK1	7	73526304	Frame_Shift_Del	DEL	CTCCCAC	TCGA-B4-5832-01A-11D-1669-08	44677317	73526304	85612359	42	14730											
GNAT3	346562	broad.mit.edu	37	7	80091851	80091851	+	Silent	SNP	G	G	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	80091851	G	C	80091851	2	2	230	1	0	0	0	0	0	0	0	1	6520	987	35	4		4	GNAT3	7	80091851	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08	6565547	80091851	79046812	43	14731											
COL1A2	1278	broad.mit.edu	37	7	94051239	94051239	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	94051239	G	A	94051239	3	1	230	1	0	0	0	0	1	0	0	0	3680	1174	41	2	2532	2	COL1A2	7	94051239	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	13959388	94051239	65087424	44	14732											
CLDN15	24146	broad.mit.edu	37	7	100875889	100875889	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	100875889	C	T	100875889	3	4	230	1	0	0	0	0	1	0	0	0	3478	768	27	1	117	1	CLDN15	7	100875889	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	6824650	100875889	58262774	45	14733											
PSMC2	5701	broad.mit.edu	37	7	103002469	103002469	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	103002469	C	T	103002469	3	4	230	1	0	0	0	0	1	0	0	0	12696	739	26	2	374	2	PSMC2	7	103002469	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	2126580	103002469	56136194	46	14734											
CFTR	1080	broad.mit.edu	37	7	117254766	117254766	+	Splice_Site	SNP	T	T	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	117254766	T	G	117254766	5	3	230	1	0	0	0	0	0	0	1	0	3296	1826	63	5	3549	5	CFTR	7	117254766	Splice_Site	SNP	T	TCGA-B4-5832-01A-11D-1669-08	14252297	117254766	41883897	47	14735											
UBN2	254048	broad.mit.edu	37	7	138967976	138967976	+	Silent	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	138967976	G	A	138967976	2	1	230	1	0	0	0	0	0	0	0	1	16905	1103	39	1		1	UBN2	7	138967976	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08	21713210	138967976	20170687	48	14736											
PRSS37	136242	broad.mit.edu	37	7	141536260	141536260	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	141536260	C	T	141536260	3	4	230	1	0	0	0	0	1	0	0	0	12636	536	19	1	68	1	PRSS37	7	141536260	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	2568284	141536260	17602403	49	14737											
SSPO	23145	broad.mit.edu	37	7	149497464	149497464	+	RNA	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	149497464	C	T	149497464	1	4	230	0	1	0	0	0	0	0	0	0	15201	711	25	2		2	SSPO	7	149497464	RNA	SNP	C	TCGA-B4-5832-01A-11D-1669-08	7961204	149497464	9641199	50	14738											
CSMD1	64478	broad.mit.edu	37	8	3216673	3216673	+	Splice_Site	SNP	C	C	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	3216673	C	A	3216673	5	1	230	1	0	0	0	0	0	0	1	0	3946	521	18	4	7589	4	CSMD1	8	3216673	Splice_Site	SNP	C	TCGA-B4-5832-01A-11D-1669-08		3216673	143147349	51	14739											
CSMD3	114788	broad.mit.edu	37	8	113697846	113697846	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	113697846	G	T	113697846	3	4	230	1	0	0	0	0	1	0	0	0	3948	1194	42	4	9080	4	CSMD3	8	113697846	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	110481173	113697846	32666176	52	14740											
CYP11B1	1584	broad.mit.edu	37	8	143960507	143960507	+	Silent	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	143960507	G	A	143960507	2	1	230	1	0	0	0	0	0	0	0	1	4147	1194	42	2		2	CYP11B1	8	143960507	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08	30262661	143960507	2403515	53	14741											
OR1J1	347168	broad.mit.edu	37	9	125239867	125239875	+	In_Frame_Del	DEL	GAAACTGTC	GAAACTGTC	-			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	-	125239875	GAAACTGTC	-	125239867	7	5	230	1	0	1	0	1	0	0	0	0	10966	1165	41	0	632	0	OR1J1	9	125239867	In_Frame_Del	DEL	GAAACTGTC	TCGA-B4-5832-01A-11D-1669-08		125239867	15973564	54	14742											
OR1N1	138883	broad.mit.edu	37	9	125289274	125289274	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	125289274	T	C	125289274	3	2	230	1	0	0	0	0	1	0	0	0	10976	1406	49	3	640	3	OR1N1	9	125289274	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08	49407	125289274	15924157	55	14743											
GATA3	2625	broad.mit.edu	37	10	8115874	8115874	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	8115874	C	T	8115874	3	4	230	1	0	0	0	0	1	0	0	0	6262	893	31	1	1241	1	GATA3	10	8115874	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08		8115874	127418873	56	14744											
MRC1	4360	broad.mit.edu	37	10	17865198	17865198	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	17865198	G	A	17865198	3	1	230	1	0	0	0	0	1	0	0	0	9763	1059	37	1	193	1	MRC1	10	17865198	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	9749324	17865198	117669549	57	14745											
DNMBP	23268	broad.mit.edu	37	10	101715031	101715031	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	101715031	C	A	101715031	3	1	230	1	0	0	0	0	1	0	0	0	4676	855	30	4	2589	4	DNMBP	10	101715031	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	83849833	101715031	33819716	58	14746											
MUC2	4583	broad.mit.edu	37	11	1097728	1097728	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	1097728	C	G	1097728	3	3	230	1	0	0	0	0	1	0	0	0	9982	623	22	4	6955	4	MUC2	11	1097728	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08		1097728	133908788	59	14747											
NUP98	4928	broad.mit.edu	37	11	3704554	3704554	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	3704554	C	A	3704554	3	1	230	1	0	0	0	0	1	0	0	0	10780	856	30	4	624	4	NUP98	11	3704554	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	2606826	3704554	131301962	60	14748											
NUP160	23279	broad.mit.edu	37	11	47819982	47819982	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	47819982	C	T	47819982	3	4	230	1	0	0	0	0	1	0	0	0	10764	835	29	2	1433	2	NUP160	11	47819982	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	44115428	47819982	87186534	61	14749											
NAALADL1	10004	broad.mit.edu	37	11	64813784	64813784	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	64813784	G	A	64813784	3	1	230	1	0	0	0	0	1	0	0	0	10136	1115	39	1	506	1	NAALADL1	11	64813784	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	16993802	64813784	70192732	62	14750											
SLC22A20	440044	broad.mit.edu	37	11	64991021	64991021	+	RNA	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	64991021	G	A	64991021	1	1	230	0	1	0	0	0	0	0	0	0	14464	1074	38	1		1	SLC22A20	11	64991021	RNA	SNP	G	TCGA-B4-5832-01A-11D-1669-08	177237	64991021	70015495	63	14751											
SYT10	341359	broad.mit.edu	37	12	33579216	33579217	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	33579217	-	G	33579216	7	5	230	1	0	1	1	0	0	0	0	0	15478	1567	55	0	1229	0	SYT10	12	33579216	Frame_Shift_Ins	INS	-	TCGA-B4-5832-01A-11D-1669-08		33579216	100272679	64	14752											
ASB8	140461	broad.mit.edu	37	12	48547183	48547183	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	48547183	G	A	48547183	3	1	230	1	0	0	0	0	1	0	0	0	1029	1232	43	2	781	2	ASB8	12	48547183	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	14967967	48547183	85304712	65	14753											
TBK1	29110	broad.mit.edu	37	12	64889519	64889519	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	64889519	A	C	64889519	3	2	230	1	0	0	0	0	1	0	0	0	15649	333	12	5	1738	5	TBK1	12	64889519	Missense_Mutation	SNP	A	TCGA-B4-5832-01A-11D-1669-08	16342336	64889519	68962376	66	14754											
C12orf50	160419	broad.mit.edu	37	12	88390202	88390202	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	88390202	C	G	88390202	3	3	230	1	0	0	0	0	1	0	0	0	1697	797	28	4	846	4	C12orf50	12	88390202	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	23500683	88390202	45461693	67	14755											
CCDC63	160762	broad.mit.edu	37	12	111336801	111336811	+	Frame_Shift_Del	DEL	AGACCTTGGAT	AGACCTTGGAT	-			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	-	111336811	AGACCTTGGAT	-	111336801	7	5	230	1	0	1	0	1	0	0	0	0	2836	72	3	0	1248	0	CCDC63	12	111336801	Frame_Shift_Del	DEL	AGACCTTGGAT	TCGA-B4-5832-01A-11D-1669-08	22946599	111336801	22515094	68	14756											
TAOK3	51347	broad.mit.edu	37	12	118598053	118598053	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	-	118598053	G	-	118598053	7	5	230	1	0	1	0	1	0	0	0	0	15561	1368	48	0	458	0	TAOK3	12	118598053	Frame_Shift_Del	DEL	G	TCGA-B4-5832-01A-11D-1669-08	7261252	118598053	15253842	69	14757											
FLT1	2321	broad.mit.edu	37	13	29002018	29002018	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	29002018	A	G	29002018	3	3	230	1	0	0	0	0	1	0	0	0	5948	420	15	3	3220	3	FLT1	13	29002018	Missense_Mutation	SNP	A	TCGA-B4-5832-01A-11D-1669-08		29002018	86167860	70	14758											
NGB	58157	broad.mit.edu	37	14	77734858	77734858	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	77734858	C	A	77734858	3	1	230	1	0	0	0	0	1	0	0	0	10399	797	28	4	191	4	NGB	14	77734858	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08		77734858	29614682	71	14759											
KLC1	3831	broad.mit.edu	37	14	104145868	104145868	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	104145868	G	T	104145868	3	4	230	1	0	0	0	0	1	0	0	0	8340	1145	40	4	1682	4	KLC1	14	104145868	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	26411010	104145868	3203672	72	14760											
PLIN1	5346	broad.mit.edu	37	15	90220708	90220708	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	90220708	T	C	90220708	3	2	230	1	0	0	0	0	1	0	0	0	12096	1821	63	3	1587	3	PLIN1	15	90220708	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08		90220708	12310684	73	14761											
DOK4	55715	broad.mit.edu	37	16	57509512	57509512	+	Silent	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	57509512	G	A	57509512	2	1	230	1	0	0	0	0	0	0	0	1	4701	1277	45	2		2	DOK4	16	57509512	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08		57509512	32845241	74	14762											
ZNF319	57567	broad.mit.edu	37	16	58030711	58030711	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	58030711	T	G	58030711	3	3	230	1	0	0	0	0	1	0	0	0	17849	1821	63	5	293	5	ZNF319	16	58030711	Missense_Mutation	SNP	T	TCGA-B4-5832-01A-11D-1669-08	521199	58030711	32324042	75	14763											
ETV4	2118	broad.mit.edu	37	17	41611247	41611247	+	Silent	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	41611247	G	A	41611247	2	1	230	1	0	0	0	0	0	0	0	1	5283	1074	38	1		1	ETV4	17	41611247	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08		41611247	39583963	76	14764											
MAP3K3	4215	broad.mit.edu	37	17	61767721	61767721	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	61767721	A	C	61767721	3	2	230	1	0	0	0	0	1	0	0	0	9258	40	2	5	1304	5	MAP3K3	17	61767721	Missense_Mutation	SNP	A	TCGA-B4-5832-01A-11D-1669-08	20156474	61767721	19427489	77	14765											
TMPRSS9	360200	broad.mit.edu	37	19	2424138	2424138	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	2424138	C	T	2424138	3	4	230	1	0	0	0	0	1	0	0	0	16265	768	27	1	2552	1	TMPRSS9	19	2424138	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08		2424138	56704845	78	14766											
TJP3	27134	broad.mit.edu	37	19	3728677	3728677	+	Missense_Mutation	SNP	G	G	A	rs150589606		TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	3728677	G	A	3728677	3	1	230	1	0	0	0	0	1	0	0	0	15943	1145	40	1	187	1	TJP3	19	3728677	Missense_Mutation	SNP	G	TCGA-B4-5832-01A-11D-1669-08	1304539	3728677	55400306	79	14767											
RFX2	5990	broad.mit.edu	37	19	5997191	5997191	+	Silent	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	5997191	G	A	5997191	2	1	230	1	0	0	0	0	0	0	0	1	13276	1078	38	1		1	RFX2	19	5997191	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08	2268514	5997191	53131792	80	14768											
ZNF585B	92285	broad.mit.edu	37	19	37677424	37677424	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	-	37677424	A	-	37677424	7	5	230	1	0	1	0	1	0	0	0	0	18030	246	9	0	1298	0	ZNF585B	19	37677424	Frame_Shift_Del	DEL	A	TCGA-B4-5832-01A-11D-1669-08	31680233	37677424	21451559	81	14769											
GPR32	2854	broad.mit.edu	37	19	51274133	51274133	+	Silent	SNP	A	A	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	51274133	A	G	51274133	2	3	230	1	0	0	0	0	0	0	0	1	6695	146	6	3		3	GPR32	19	51274133	Silent	SNP	A	TCGA-B4-5832-01A-11D-1669-08	13596709	51274133	7854850	82	14770											
BANF2	140836	broad.mit.edu	37	20	17705770	17705770	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	17705770	A	G	17705770	3	3	230	1	0	0	0	0	1	0	0	0	1308	130	5	3	127	3	BANF2	20	17705770	Missense_Mutation	SNP	A	TCGA-B4-5832-01A-11D-1669-08		17705770	45319750	83	14771											
SAMHD1	25939	broad.mit.edu	37	20	35579886	35579886	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	-	35579886	A	-	35579886	7	5	230	1	0	1	0	1	0	0	0	0	13841	304	11	0	1783	0	SAMHD1	20	35579886	Frame_Shift_Del	DEL	A	TCGA-B4-5832-01A-11D-1669-08	17874116	35579886	27445634	84	14772											
ATP9A	10079	broad.mit.edu	37	20	50329572	50329572	+	Silent	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	50329572	C	T	50329572	2	4	230	1	0	0	0	0	0	0	0	1	1198	680	24	2		2	ATP9A	20	50329572	Silent	SNP	C	TCGA-B4-5832-01A-11D-1669-08	14749686	50329572	12695948	85	14773											
SLC7A3	84889	broad.mit.edu	37	X	70147194	70147194	+	Silent	SNP	G	G	A			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	A	70147194	G	A	70147194	2	1	230	1	0	0	0	0	0	0	0	1	14711	1252	44	2		2	SLC7A3	23	70147194	Silent	SNP	G	TCGA-B4-5832-01A-11D-1669-08		70147194	85123366	86	14774											
PABPC5	140886	broad.mit.edu	37	X	90691444	90691444	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	G	90691444	C	G	90691444	3	3	230	1	0	0	0	0	1	0	0	0	11374	527	19	4	870	4	PABPC5	23	90691444	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	20544250	90691444	64579116	87	14775											
SLC9A6	10479	broad.mit.edu	37	X	135080342	135080342	+	Silent	SNP	A	A	C			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	C	135080342	A	C	135080342	2	2	230	1	0	0	0	0	0	0	0	1	14731	63	3	5		5	SLC9A6	23	135080342	Silent	SNP	A	TCGA-B4-5832-01A-11D-1669-08	44388898	135080342	20190218	88	14776											
SLITRK2	84631	broad.mit.edu	37	X	144904214	144904214	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5832-01A-11D-1669-08	TCGA-B4-5832-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79268e8f-97a3-4b91-968f-e5a98832130d	ee7e6709-2157-4f53-b3ed-5dcee397c04d	T	144904214	C	T	144904214	3	4	230	1	0	0	0	0	1	0	0	0	14756	913	32	2	273	2	SLITRK2	23	144904214	Missense_Mutation	SNP	C	TCGA-B4-5832-01A-11D-1669-08	9823872	144904214	10366346	89	14777											
YARS	8565	broad.mit.edu	37	1	33252023	33252023	+	Silent	SNP	T	T	C			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	C	33252023	T	C	33252023	2	2	231	1	0	0	0	0	0	0	0	1	17479	1490	52	3		3	YARS	1	33252023	Silent	SNP	T	TCGA-B4-5834-01A-11D-1669-08		33252023	215998598	1	14778											
DMAP1	55929	broad.mit.edu	37	1	44685108	44685108	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	44685108	C	A	44685108	3	1	231	1	0	0	0	0	1	0	0	0	4578	855	30	4	963	4	DMAP1	1	44685108	Missense_Mutation	SNP	C	TCGA-B4-5834-01A-11D-1669-08	11433085	44685108	204565513	2	14779											
SLC16A1	6566	broad.mit.edu	37	1	113460112	113460112	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	113460112	C	T	113460112	3	4	231	1	0	0	0	0	1	0	0	0	14415	739	26	2	594	2	SLC16A1	1	113460112	Missense_Mutation	SNP	C	TCGA-B4-5834-01A-11D-1669-08	68775004	113460112	135790509	3	14780											
ATP1A1	476	broad.mit.edu	37	1	116937892	116937892	+	Silent	SNP	A	A	T			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	116937892	A	T	116937892	2	4	231	1	0	0	0	0	0	0	0	1	1128	233	9	5		5	ATP1A1	1	116937892	Silent	SNP	A	TCGA-B4-5834-01A-11D-1669-08	3477780	116937892	132312729	4	14781											
DDR2	4921	broad.mit.edu	37	1	162740113	162740113	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	162740113	G	A	162740113	3	1	231	1	0	0	0	0	1	0	0	0	4339	1290	45	2	1353	2	DDR2	1	162740113	Missense_Mutation	SNP	G	TCGA-B4-5834-01A-11D-1669-08	45802221	162740113	86510508	5	14782											
SLC41A1	254428	broad.mit.edu	37	1	205767924	205767924	+	Silent	SNP	G	G	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	205767924	G	A	205767924	2	1	231	1	0	0	0	0	0	0	0	1	14642	1277	45	2		2	SLC41A1	1	205767924	Silent	SNP	G	TCGA-B4-5834-01A-11D-1669-08	43027811	205767924	43482697	6	14783											
LRP2	4036	broad.mit.edu	37	2	170062051	170062051	+	Silent	SNP	G	G	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	170062051	G	A	170062051	2	1	231	1	0	0	0	0	0	0	0	1	8963	1277	45	2		2	LRP2	2	170062051	Silent	SNP	G	TCGA-B4-5834-01A-11D-1669-08		170062051	73137322	7	14784											
KIAA1715	80856	broad.mit.edu	37	2	176835534	176835534	+	Splice_Site	SNP	T	T	C			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	C	176835534	T	C	176835534	5	2	231	1	0	0	0	0	0	0	1	0	8261	1536	53	3	1003	3	KIAA1715	2	176835534	Splice_Site	SNP	T	TCGA-B4-5834-01A-11D-1669-08	6773483	176835534	66363839	8	14785											
LRRC2	79442	broad.mit.edu	37	3	46563140	46563140	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	46563140	C	T	46563140	3	4	231	1	0	0	0	0	1	0	0	0	8983	797	28	2	185	2	LRRC2	3	46563140	Missense_Mutation	SNP	C	TCGA-B4-5834-01A-11D-1669-08		46563140	151459290	9	14786											
IGSF10	285313	broad.mit.edu	37	3	151166433	151166433	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	151166433	T	A	151166433	3	1	231	1	0	0	0	0	1	0	0	0	7604	1580	55	5	6595	5	IGSF10	3	151166433	Missense_Mutation	SNP	T	TCGA-B4-5834-01A-11D-1669-08	104603293	151166433	46855997	10	14787											
SDAD1	55153	broad.mit.edu	37	4	76882456	76882456	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	C	76882456	T	C	76882456	3	2	231	1	0	0	0	0	1	0	0	0	13963	1493	52	3	908	3	SDAD1	4	76882456	Missense_Mutation	SNP	T	TCGA-B4-5834-01A-11D-1669-08		76882456	114271820	11	14788											
SLC39A7	7922	broad.mit.edu	37	6	33170811	33170811	+	Silent	SNP	C	C	T			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	33170811	C	T	33170811	2	4	231	1	0	0	0	0	0	0	0	1	14636	842	30	2		2	SLC39A7	6	33170811	Silent	SNP	C	TCGA-B4-5834-01A-11D-1669-08		33170811	137944256	12	14789											
UTRN	7402	broad.mit.edu	37	6	144844257	144844257	+	Nonsense_Mutation	SNP	A	A	T			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	144844257	A	T	144844257	4	4	231	1	0	0	0	0	0	1	0	0	17115	180	7	5	5997	5	UTRN	6	144844257	Nonsense_Mutation	SNP	A	TCGA-B4-5834-01A-11D-1669-08	111673446	144844257	26270810	13	14790											
PMS2	5395	broad.mit.edu	37	7	6042153	6042153	+	Silent	SNP	T	T	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	6042153	T	A	6042153	2	1	231	1	0	0	0	0	0	0	0	1	12150	1567	55	5		5	PMS2	7	6042153	Silent	SNP	T	TCGA-B4-5834-01A-11D-1669-08		6042153	153096510	14	14791											
CCDC129	223075	broad.mit.edu	37	7	31682489	31682489	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	C	31682489	T	C	31682489	3	2	231	1	0	0	0	0	1	0	0	0	2766	1464	51	3	1543	3	CCDC129	7	31682489	Missense_Mutation	SNP	T	TCGA-B4-5834-01A-11D-1669-08	25640336	31682489	127456174	15	14792											
FOXD4	2298	broad.mit.edu	37	9	117355	117355	+	Silent	SNP	A	A	G			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	G	117355	A	G	117355	2	3	231	1	0	0	0	0	0	0	0	1	6006	59	3	3		3	FOXD4	9	117355	Silent	SNP	A	TCGA-B4-5834-01A-11D-1669-08		117355	141096076	16	14793											
NDOR1	27158	broad.mit.edu	37	9	140110192	140110192	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	140110192	G	A	140110192	3	1	231	1	0	0	0	0	1	0	0	0	10256	1232	43	2	1412	2	NDOR1	9	140110192	Missense_Mutation	SNP	G	TCGA-B4-5834-01A-11D-1669-08	139992837	140110192	1103239	17	14794											
ANK3	288	broad.mit.edu	37	10	61832058	61832058	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	G	61832058	T	G	61832058	3	3	231	1	0	0	0	0	1	0	0	0	622	1696	59	5	4893	5	ANK3	10	61832058	Missense_Mutation	SNP	T	TCGA-B4-5834-01A-11D-1669-08		61832058	73702689	18	14795											
OR8B3	390271	broad.mit.edu	37	11	124266451	124266451	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	124266451	G	A	124266451	3	1	231	1	0	0	0	0	1	0	0	0	11235	942	33	2	146	2	OR8B3	11	124266451	Missense_Mutation	SNP	G	TCGA-B4-5834-01A-11D-1669-08		124266451	10740065	19	14796											
KCNJ1	3758	broad.mit.edu	37	11	128709679	128709679	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	C	128709679	A	C	128709679	3	2	231	1	0	0	0	0	1	0	0	0	8050	14	1	5	662	5	KCNJ1	11	128709679	Missense_Mutation	SNP	A	TCGA-B4-5834-01A-11D-1669-08	4443228	128709679	6296837	20	14797											
BCL7A	605	broad.mit.edu	37	12	122481898	122481898	+	Silent	SNP	C	C	T	rs111620654	byFrequency	TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	122481898	C	T	122481898	2	4	231	1	0	0	0	0	0	0	0	1	1378	535	19	1		1	BCL7A	12	122481898	Silent	SNP	C	TCGA-B4-5834-01A-11D-1669-08		122481898	11369997	21	14798											
DDX55	57696	broad.mit.edu	37	12	124094530	124094530	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	124094530	G	A	124094530	3	1	231	1	0	0	0	0	1	0	0	0	4375	1203	42	2	622	2	DDX55	12	124094530	Missense_Mutation	SNP	G	TCGA-B4-5834-01A-11D-1669-08	1612632	124094530	9757365	22	14799											
PLEKHG3	26030	broad.mit.edu	37	14	65210037	65210037	+	Silent	SNP	G	G	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	65210037	G	A	65210037	2	1	231	1	0	0	0	0	0	0	0	1	12077	1103	39	1		1	PLEKHG3	14	65210037	Silent	SNP	G	TCGA-B4-5834-01A-11D-1669-08		65210037	42139503	23	14800											
MOAP1	64112	broad.mit.edu	37	14	93650300	93650301	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	G	93650301	-	G	93650300	7	5	231	1	0	1	1	0	0	0	0	0	9687	175	7	0	771	0	MOAP1	14	93650300	Frame_Shift_Ins	INS	-	TCGA-B4-5834-01A-11D-1669-08	28440263	93650300	13699240	24	14801											
SNX29	92017	broad.mit.edu	37	16	12145807	12145807	+	Missense_Mutation	SNP	G	G	T	rs140388401		TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	12145807	G	T	12145807	3	4	231	1	0	0	0	0	1	0	0	0	14911	933	33	4		4	SNX29	16	12145807	Missense_Mutation	SNP	G	TCGA-B4-5834-01A-11D-1669-08		12145807	78208946	25	14802											
MYH8	4626	broad.mit.edu	37	17	10321989	10321989	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	A	10321989	C	A	10321989	3	1	231	1	0	0	0	0	1	0	0	0	10048	826	29	4	5473	4	MYH8	17	10321989	Missense_Mutation	SNP	C	TCGA-B4-5834-01A-11D-1669-08		10321989	70873221	26	14803											
TOM1L1	10040	broad.mit.edu	37	17	53026926	53026926	+	Silent	SNP	A	A	G			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	G	53026926	A	G	53026926	2	3	231	1	0	0	0	0	0	0	0	1	16364	11	1	3		3	TOM1L1	17	53026926	Silent	SNP	A	TCGA-B4-5834-01A-11D-1669-08	42704937	53026926	28168284	27	14804											
CTDP1	9150	broad.mit.edu	37	18	77477556	77477556	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	G	77477556	C	G	77477556	3	3	231	1	0	0	0	0	1	0	0	0	4004	710	25	4	2124	4	CTDP1	18	77477556	Missense_Mutation	SNP	C	TCGA-B4-5834-01A-11D-1669-08		77477556	599692	28	14805											
HOOK2	29911	broad.mit.edu	37	19	12881984	12881984	+	Silent	SNP	C	C	T			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	12881984	C	T	12881984	2	4	231	1	0	0	0	0	0	0	0	1	7290	680	24	2		2	HOOK2	19	12881984	Silent	SNP	C	TCGA-B4-5834-01A-11D-1669-08		12881984	46246999	29	14806											
RFX1	5989	broad.mit.edu	37	19	14088854	14088854	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	C	14088854	G	C	14088854	3	2	231	1	0	0	0	0	1	0	0	0	13275	1194	42	4	2116	4	RFX1	19	14088854	Missense_Mutation	SNP	G	TCGA-B4-5834-01A-11D-1669-08	1206870	14088854	45040129	30	14807											
SLC1A5	6510	broad.mit.edu	37	19	47278897	47278897	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	47278897	A	T	47278897	3	4	231	1	0	0	0	0	1	0	0	0	14448	449	16	5	133	5	SLC1A5	19	47278897	Missense_Mutation	SNP	A	TCGA-B4-5834-01A-11D-1669-08	33190043	47278897	11850086	31	14808											
ITSN1	6453	broad.mit.edu	37	21	35122607	35122607	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	C	35122607	T	C	35122607	3	2	231	1	0	0	0	0	1	0	0	0	7933	1580	55	3	524	3	ITSN1	21	35122607	Missense_Mutation	SNP	T	TCGA-B4-5834-01A-11D-1669-08		35122607	13007288	32	14809											
CCT8L2	150160	broad.mit.edu	37	22	17071901	17071901	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5834-01A-11D-1669-08	TCGA-B4-5834-10A-02D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	16c5931c-a751-4e91-a13a-4e8441673119	dff3f173-14b7-4d23-becc-d6436a9e9256	T	17071901	G	T	17071901	3	4	231	1	0	0	0	0	1	0	0	0	2963	971	34	4	137	4	CCT8L2	22	17071901	Missense_Mutation	SNP	G	TCGA-B4-5834-01A-11D-1669-08		17071901	34232665	33	14810											
MMEL1	79258	broad.mit.edu	37	1	2530166	2530166	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	2530166	C	A	2530166	3	1	232	1	0	0	0	0	1	0	0	0	9653	913	32	4	1286	4	MMEL1	1	2530166	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08		2530166	246720455	1	14811											
KIF1B	23095	broad.mit.edu	37	1	10364544	10364544	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	10364544	T	A	10364544	3	1	232	1	0	0	0	0	1	0	0	0	8291	1580	55	5	3379	5	KIF1B	1	10364544	Missense_Mutation	SNP	T	TCGA-B4-5835-01A-11D-1669-08	7834378	10364544	238886077	2	14812											
ECE1	1889	broad.mit.edu	37	1	21584023	21584023	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	21584023	C	A	21584023	4	1	232	1	0	0	0	0	0	1	0	0	4891	893	31	4	1541	4	ECE1	1	21584023	Nonsense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	11219479	21584023	227666598	3	14813											
HTR1D	3352	broad.mit.edu	37	1	23519762	23519762	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	23519762	G	T	23519762	3	4	232	1	0	0	0	0	1	0	0	0	7445	933	33	4	186	4	HTR1D	1	23519762	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	1935739	23519762	225730859	4	14814											
WASF2	10163	broad.mit.edu	37	1	27745564	27745564	+	Silent	SNP	T	T	C			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	C	27745564	T	C	27745564	2	2	232	1	0	0	0	0	0	0	0	1	17265	1538	54	3		3	WASF2	1	27745564	Silent	SNP	T	TCGA-B4-5835-01A-11D-1669-08	4225802	27745564	221505057	5	14815											
PTAFR	5724	broad.mit.edu	37	1	28477382	28477382	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	28477382	C	A	28477382	4	1	232	1	0	0	0	0	0	1	0	0	12733	835	29	4	881	4	PTAFR	1	28477382	Nonsense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	731818	28477382	220773239	6	14816											
CD2	914	broad.mit.edu	37	1	117307204	117307204	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	117307204	A	-	117307204	7	5	232	1	0	1	0	1	0	0	0	0	2981	247	9	0	726	0	CD2	1	117307204	Frame_Shift_Del	DEL	A	TCGA-B4-5835-01A-11D-1669-08	88829822	117307204	131943417	7	14817											
INTS3	65123	broad.mit.edu	37	1	153723708	153723708	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	153723708	G	A	153723708	3	1	232	1	0	0	0	0	1	0	0	0	7786	1116	39	1	748	1	INTS3	1	153723708	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	36416504	153723708	95526913	8	14818											
ADAM15	8751	broad.mit.edu	37	1	155026908	155026908	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	155026908	G	T	155026908	3	4	232	1	0	0	0	0	1	0	0	0	237	1319	46	4	560	4	ADAM15	1	155026908	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	1303200	155026908	94223713	9	14819											
OR2B11	127623	broad.mit.edu	37	1	247614975	247614975	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	247614975	G	T	247614975	3	4	232	1	0	0	0	0	1	0	0	0	10995	1328	46	4	646	4	OR2B11	1	247614975	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	92588067	247614975	1635646	10	14820											
KHK	3795	broad.mit.edu	37	2	27317365	27317365	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	27317365	G	A	27317365	3	1	232	1	0	0	0	0	1	0	0	0	8156	1087	38	1	240	1	KHK	2	27317365	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08		27317365	215882008	11	14821											
NEB	4703	broad.mit.edu	37	2	152471015	152471015	+	Silent	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	152471015	G	T	152471015	2	4	232	1	0	0	0	0	0	0	0	1	10309	1335	47	4		4	NEB	2	152471015	Silent	SNP	G	TCGA-B4-5835-01A-11D-1669-08	125153650	152471015	90728358	12	14822											
TTN	7273	broad.mit.edu	37	2	179433734	179433734	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	179433734	C	A	179433734	3	1	232	1	0	0	0	0	1	0	0	0	16747	826	29	4	31002	4	TTN	2	179433734	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	26962719	179433734	63765639	13	14823											
TTN	7273	broad.mit.edu	37	2	179447818	179447818	+	Silent	SNP	T	T	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	179447818	T	A	179447818	2	1	232	1	0	0	0	0	0	0	0	1	16747	1741	61	5		5	TTN	2	179447818	Silent	SNP	T	TCGA-B4-5835-01A-11D-1669-08	14084	179447818	63751555	14	14824											
FSIP2	401024	broad.mit.edu	37	2	186673486	186673486	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	186673486	G	A	186673486	3	1	232	1	0	0	0	0	1	0	0	0	6082	1145	40	1	19786	1	FSIP2	2	186673486	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	7225668	186673486	56525887	15	14825											
PTPRN	5798	broad.mit.edu	37	2	220162639	220162639	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	220162639	C	A	220162639	3	1	232	1	0	0	0	0	1	0	0	0	12820	623	22	4	1128	4	PTPRN	2	220162639	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	33489153	220162639	23036734	16	14826											
SLC6A11	6538	broad.mit.edu	37	3	10980053	10980053	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	10980053	A	T	10980053	3	4	232	1	0	0	0	0	1	0	0	0	14687	217	8	5	1918	5	SLC6A11	3	10980053	Missense_Mutation	SNP	A	TCGA-B4-5835-01A-11D-1669-08		10980053	187042377	17	14827											
SETD2	29072	broad.mit.edu	37	3	47163797	47163797	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	47163797	C	A	47163797	4	1	232	1	0	0	0	0	0	1	0	0	14144	922	32	4	5441	4	SETD2	3	47163797	Nonsense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	36183744	47163797	150858633	18	14828											
SETD2	29072	broad.mit.edu	37	3	47164447	47164447	+	Nonsense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	47164447	G	T	47164447	4	4	232	1	0	0	0	0	0	1	0	0	14144	1294	45	4	6091	4	SETD2	3	47164447	Nonsense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	650	47164447	150857983	19	14829											
NPHP3	27031	broad.mit.edu	37	3	132401619	132401619	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	132401619	T	-	132401619	7	5	232	1	0	1	0	1	0	0	0	0	10587	1609	56	0	260	0	NPHP3	3	132401619	Frame_Shift_Del	DEL	T	TCGA-B4-5835-01A-11D-1669-08	85237172	132401619	65620811	20	14830											
DBR1	51163	broad.mit.edu	37	3	137886050	137886050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	137886050	A	-	137886050	7	5	232	1	0	1	0	1	0	0	0	0	4259	246	9	0	1063	0	DBR1	3	137886050	Frame_Shift_Del	DEL	A	TCGA-B4-5835-01A-11D-1669-08	5484431	137886050	60136380	21	14831											
ATR	545	broad.mit.edu	37	3	142177883	142177883	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	142177883	C	T	142177883	3	4	232	1	0	0	0	0	1	0	0	0	1204	603	21	2	530	2	ATR	3	142177883	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	4291833	142177883	55844547	22	14832											
FGG	2266	broad.mit.edu	37	4	155533709	155533709	+	Nonsense_Mutation	SNP	A	A	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	155533709	A	T	155533709	4	4	232	1	0	0	0	0	0	1	0	0	5877	372	13	5	1363	5	FGG	4	155533709	Nonsense_Mutation	SNP	A	TCGA-B4-5835-01A-11D-1669-08		155533709	35620567	23	14833											
BTF3	689	broad.mit.edu	37	5	72801044	72801047	+	Frame_Shift_Del	DEL	CCAA	CCAA	-			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	72801047	CCAA	-	72801044	7	5	232	1	0	1	0	1	0	0	0	0	1553	855	30	0	624	0	BTF3	5	72801044	Frame_Shift_Del	DEL	CCAA	TCGA-B4-5835-01A-11D-1669-08		72801044	108114216	24	14834											
PCDH1	5097	broad.mit.edu	37	5	141248675	141248675	+	Missense_Mutation	SNP	C	C	T	rs145360303		TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	141248675	C	T	141248675	3	4	232	1	0	0	0	0	1	0	0	0	11513	536	19	1	3451	1	PCDH1	5	141248675	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	68447631	141248675	39666585	25	14835											
SYNE1	23345	broad.mit.edu	37	6	152784523	152784523	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	152784523	C	A	152784523	3	1	232	1	0	0	0	0	1	0	0	0	15457	594	21	4	24916	4	SYNE1	6	152784523	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08		152784523	18330544	26	14836											
SYNJ2	8871	broad.mit.edu	37	6	158483043	158483043	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	158483043	G	T	158483043	3	4	232	1	0	0	0	0	1	0	0	0	15465	1319	46	4	1004	4	SYNJ2	6	158483043	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	5698520	158483043	12632024	27	14837											
ZNF479	90827	broad.mit.edu	37	7	57188556	57188556	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	G	57188556	T	G	57188556	3	3	232	1	0	0	0	0	1	0	0	0	17945	1841	64	5	1012	5	ZNF479	7	57188556	Missense_Mutation	SNP	T	TCGA-B4-5835-01A-11D-1669-08		57188556	101950107	28	14838											
KIAA1324L	222223	broad.mit.edu	37	7	86536993	86536993	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	G	86536993	C	G	86536993	3	3	232	1	0	0	0	0	1	0	0	0	8231	565	20	4	558	4	KIAA1324L	7	86536993	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	29348437	86536993	72601670	29	14839											
PLOD3	8985	broad.mit.edu	37	7	100859716	100859716	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	100859716	C	A	100859716	3	1	232	1	0	0	0	0	1	0	0	0	12110	855	30	4	1971	4	PLOD3	7	100859716	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	14322723	100859716	58278947	30	14840											
CALD1	800	broad.mit.edu	37	7	134642982	134642982	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	134642982	C	A	134642982	3	1	232	1	0	0	0	0	1	0	0	0	2583	827	29	4	2093	4	CALD1	7	134642982	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	33783266	134642982	24495681	31	14841											
KLRG2	346689	broad.mit.edu	37	7	139164916	139164916	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	139164916	T	A	139164916	3	1	232	1	0	0	0	0	1	0	0	0	8429	1464	51	5	410	5	KLRG2	7	139164916	Missense_Mutation	SNP	T	TCGA-B4-5835-01A-11D-1669-08	4521934	139164916	19973747	32	14842											
PLEC	5339	broad.mit.edu	37	8	144991469	144991469	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	144991469	G	A	144991469	4	1	232	1	0	0	0	0	0	1	0	0	12059	1328	46	2	1127	2	PLEC	8	144991469	Nonsense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08		144991469	1372553	33	14843	194	2									
PLEC	5339	broad.mit.edu	37	8	144991470	144991470	+	Silent	SNP	C	C	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	144991470	C	T	144991470	2	4	232	1	0	0	0	0	0	0	0	1	12059	796	28	2		2	PLEC	8	144991470	Silent	SNP	C	TCGA-B4-5835-01A-11D-1669-08	1	144991470	1372552	34	14844	194	2									
VPS13A	23230	broad.mit.edu	37	9	79985485	79985485	+	Silent	SNP	C	C	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	79985485	C	T	79985485	2	4	232	1	0	0	0	0	0	0	0	1	17201	784	28	2		2	VPS13A	9	79985485	Silent	SNP	C	TCGA-B4-5835-01A-11D-1669-08		79985485	61227946	35	14845											
GSN	2934	broad.mit.edu	37	9	124062285	124062285	+	Splice_Site	SNP	T	T	G			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	G	124062285	T	G	124062285	5	3	232	1	0	0	0	0	0	0	1	0	6832	1710	59	5	148	5	GSN	9	124062285	Splice_Site	SNP	T	TCGA-B4-5835-01A-11D-1669-08	44076800	124062285	17151146	36	14846											
THNSL1	79896	broad.mit.edu	37	10	25313297	25313297	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	25313297	C	T	25313297	3	4	232	1	0	0	0	0	1	0	0	0	15874	478	17	2	1147	2	THNSL1	10	25313297	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08		25313297	110221450	37	14847											
ANKRD26	22852	broad.mit.edu	37	10	27355434	27355434	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	27355434	T	-	27355434	7	5	232	1	0	1	0	1	0	0	0	0	654	1490	52	0	3977	0	ANKRD26	10	27355434	Frame_Shift_Del	DEL	T	TCGA-B4-5835-01A-11D-1669-08	2042137	27355434	108179313	38	14848											
PRKG1	5592	broad.mit.edu	37	10	54042044	54042044	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	54042044	G	-	54042044	7	5	232	1	0	1	0	1	0	0	0	0	12532	1335	47	0	2001	0	PRKG1	10	54042044	Frame_Shift_Del	DEL	G	TCGA-B4-5835-01A-11D-1669-08	26686610	54042044	81492703	39	14849											
ANKRD1	27063	broad.mit.edu	37	10	92679010	92679010	+	Silent	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	92679010	G	A	92679010	2	1	232	1	0	0	0	0	0	0	0	1	637	1020	36	2		2	ANKRD1	10	92679010	Silent	SNP	G	TCGA-B4-5835-01A-11D-1669-08	38636966	92679010	42855737	40	14850											
RRP12	23223	broad.mit.edu	37	10	99130679	99130679	+	Splice_Site	DEL	C	C	-			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	99130679	C	-	99130679	8	5	232	1	0	1	0	1	0	0	1	0	13699	521	18	0	1446	0	RRP12	10	99130679	Splice_Site	DEL	C	TCGA-B4-5835-01A-11D-1669-08	6451669	99130679	36404068	41	14851											
FAM178A	55719	broad.mit.edu	37	10	102709854	102709854	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	102709854	C	T	102709854	3	4	232	1	0	0	0	0	1	0	0	0	5507	913	32	2	3204	2	FAM178A	10	102709854	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	3579175	102709854	32824893	42	14852											
TACC2	10579	broad.mit.edu	37	10	123987406	123987406	+	Silent	SNP	T	T	C			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	C	123987406	T	C	123987406	2	2	232	1	0	0	0	0	0	0	0	1	15514	1432	50	3		3	TACC2	10	123987406	Silent	SNP	T	TCGA-B4-5835-01A-11D-1669-08	21277552	123987406	11547341	43	14853											
KCNQ1	3784	broad.mit.edu	37	11	2606480	2606480	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	2606480	G	T	2606480	3	4	232	1	0	0	0	0	1	0	0	0	8089	933	33	4	1110	4	KCNQ1	11	2606480	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08		2606480	132400036	44	14854											
NLRP14	338323	broad.mit.edu	37	11	7064624	7064624	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	C	7064624	A	C	7064624	3	2	232	1	0	0	0	0	1	0	0	0	10483	333	12	5	1377	5	NLRP14	11	7064624	Missense_Mutation	SNP	A	TCGA-B4-5835-01A-11D-1669-08	4458144	7064624	127941892	45	14855											
ABCC8	6833	broad.mit.edu	37	11	17464293	17464293	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	17464293	G	A	17464293	3	1	232	1	0	0	0	0	1	0	0	0	58	1203	42	2	3261	2	ABCC8	11	17464293	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	10399669	17464293	117542223	46	14856											
XRRA1	143570	broad.mit.edu	37	11	74563054	74563054	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	74563054	G	T	74563054	3	4	232	1	0	0	0	0	1	0	0	0	17473	1000	35	4	1186	4	XRRA1	11	74563054	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	57098761	74563054	60443462	47	14857											
MMP27	64066	broad.mit.edu	37	11	102575298	102575298	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	102575298	G	A	102575298	3	1	232	1	0	0	0	0	1	0	0	0	9671	1000	35	2	1266	2	MMP27	11	102575298	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	28012244	102575298	32431218	48	14858											
BCL9L	283149	broad.mit.edu	37	11	118771969	118771969	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	118771969	A	T	118771969	3	4	232	1	0	0	0	0	1	0	0	0	1382	159	6	5	2028	5	BCL9L	11	118771969	Missense_Mutation	SNP	A	TCGA-B4-5835-01A-11D-1669-08	16196671	118771969	16234547	49	14859											
VWF	7450	broad.mit.edu	37	12	6094833	6094833	+	Splice_Site	SNP	T	T	C			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	C	6094833	T	C	6094833	5	2	232	1	0	0	0	0	0	0	1	0	17258	1594	55	3	1700	3	VWF	12	6094833	Splice_Site	SNP	T	TCGA-B4-5835-01A-11D-1669-08		6094833	127757062	50	14860											
R3HDM2	22864	broad.mit.edu	37	12	57648881	57648881	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	G	57648881	A	G	57648881	3	3	232	1	0	0	0	0	1	0	0	0	12901	188	7	3	328	3	R3HDM2	12	57648881	Missense_Mutation	SNP	A	TCGA-B4-5835-01A-11D-1669-08	51554048	57648881	76203014	51	14861											
PTPRR	5801	broad.mit.edu	37	12	71078029	71078029	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	71078029	C	A	71078029	4	1	232	1	0	0	0	0	0	1	0	0	12823	864	30	4	618	4	PTPRR	12	71078029	Nonsense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	13429148	71078029	62773866	52	14862											
SLITRK6	84189	broad.mit.edu	37	13	86369824	86369824	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	86369824	C	A	86369824	4	1	232	1	0	0	0	0	0	1	0	0	14760	835	29	4	1709	4	SLITRK6	13	86369824	Nonsense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08		86369824	28800054	53	14863											
SYNE2	23224	broad.mit.edu	37	14	64445691	64445691	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	64445691	G	T	64445691	3	4	232	1	0	0	0	0	1	0	0	0	15458	1348	47	4	1578	4	SYNE2	14	64445691	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08		64445691	42903849	54	14864											
TMOD3	29766	broad.mit.edu	37	15	52161504	52161504	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	52161504	C	A	52161504	3	1	232	1	0	0	0	0	1	0	0	0	16247	912	32	4	223	4	TMOD3	15	52161504	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08		52161504	50369888	55	14865											
HERC1	8925	broad.mit.edu	37	15	63961829	63961829	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	63961829	G	T	63961829	3	4	232	1	0	0	0	0	1	0	0	0	7064	942	33	4	6627	4	HERC1	15	63961829	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	11800325	63961829	38569563	56	14866											
MEGF11	84465	broad.mit.edu	37	15	66249960	66249960	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	66249960	C	A	66249960	3	1	232	1	0	0	0	0	1	0	0	0	9468	796	28	4	1978	4	MEGF11	15	66249960	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	2288131	66249960	36281432	57	14867											
FAM103A1	83640	broad.mit.edu	37	15	83657865	83657865	+	Missense_Mutation	SNP	G	G	A	rs150238339		TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	83657865	G	A	83657865	3	1	232	1	0	0	0	0	1	0	0	0	5388	1087	38	1	97	1	FAM103A1	15	83657865	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	17407905	83657865	18873527	58	14868											
MSLN	10232	broad.mit.edu	37	16	815130	815130	+	Silent	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	815130	G	A	815130	2	1	232	1	0	0	0	0	0	0	0	1	9888	1277	45	2		2	MSLN	16	815130	Silent	SNP	G	TCGA-B4-5835-01A-11D-1669-08		815130	89539623	59	14869											
GP2	2813	broad.mit.edu	37	16	20334206	20334206	+	Missense_Mutation	SNP	C	C	T	rs143098544		TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	20334206	C	T	20334206	3	4	232	1	0	0	0	0	1	0	0	0	6589	855	30	2	1005	2	GP2	16	20334206	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	19519076	20334206	70020547	60	14870											
DNAH3	55567	broad.mit.edu	37	16	20999308	20999308	+	Silent	SNP	A	A	G			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	G	20999308	A	G	20999308	2	3	232	1	0	0	0	0	0	0	0	1	4605	126	5	3		3	DNAH3	16	20999308	Silent	SNP	A	TCGA-B4-5835-01A-11D-1669-08	665102	20999308	69355445	61	14871											
MAZ	4150	broad.mit.edu	37	16	29821427	29821450	+	In_Frame_Del	DEL	GCAGCGGCAGCGGCGGCAGCGGCA	GCAGCGGCAGCGGCGGCAGCGGCA	-	rs78764184		TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	29821450	GCAGCGGCAGCGGCGGCAGCGGCA	-	29821427	7	5	232	1	0	1	0	1	0	0	0	0	9347	1203	42	0	1534	0	MAZ	16	29821427	In_Frame_Del	DEL	GCAGCGGCAGCGGCGGCAGCGGCA	TCGA-B4-5835-01A-11D-1669-08	8822119	29821427	60533326	62	14872											
ATP6V0D1	9114	broad.mit.edu	37	16	67478511	67478511	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	67478511	C	T	67478511	3	4	232	1	0	0	0	0	1	0	0	0	1173	797	28	2	678	2	ATP6V0D1	16	67478511	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	37657084	67478511	22876242	63	14873											
AOC2	314	broad.mit.edu	37	17	41002100	41002100	+	Splice_Site	SNP	A	A	G			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	G	41002100	A	G	41002100	5	3	232	1	0	0	0	0	0	0	1	0	727	347	12	3	2020	3	AOC2	17	41002100	Splice_Site	SNP	A	TCGA-B4-5835-01A-11D-1669-08		41002100	40193110	64	14874											
BPTF	2186	broad.mit.edu	37	17	65972039	65972039	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	65972039	C	A	65972039	3	1	232	1	0	0	0	0	1	0	0	0	1497	912	32	4	9183	4	BPTF	17	65972039	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	24969939	65972039	15223171	65	14875											
ABCA8	10351	broad.mit.edu	37	17	66878093	66878093	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	66878093	C	A	66878093	3	1	232	1	0	0	0	0	1	0	0	0	38	768	27	4	1048	4	ABCA8	17	66878093	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	906054	66878093	14317117	66	14876											
SIRT7	51547	broad.mit.edu	37	17	79875967	79875967	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	79875967	G	A	79875967	3	1	232	1	0	0	0	0	1	0	0	0	14356	1087	38	1	1201	1	SIRT7	17	79875967	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	12997874	79875967	1319243	67	14877											
AZU1	566	broad.mit.edu	37	19	831827	831827	+	Nonsense_Mutation	SNP	C	C	T	rs112572343		TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	831827	C	T	831827	4	4	232	1	0	0	0	0	0	1	0	0	1243	644	23	1	724	1	AZU1	19	831827	Nonsense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08		831827	58297156	68	14878											
VAV1	7409	broad.mit.edu	37	19	6853974	6853974	+	Nonsense_Mutation	SNP	T	T	G			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	G	6853974	T	G	6853974	4	3	232	1	0	0	0	0	0	1	0	0	17143	1500	52	5	2451	5	VAV1	19	6853974	Nonsense_Mutation	SNP	T	TCGA-B4-5835-01A-11D-1669-08	6022147	6853974	52275009	69	14879											
OR7D2	162998	broad.mit.edu	37	19	9296949	9296949	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	9296949	G	A	9296949	3	1	232	1	0	0	0	0	1	0	0	0	11226	1319	46	2	494	2	OR7D2	19	9296949	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	2442975	9296949	49832034	70	14880											
RAVER1	125950	broad.mit.edu	37	19	10431728	10431728	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	10431728	G	-	10431728	7	5	232	1	0	1	0	1	0	0	0	0	13107	1000	35	0	774	0	RAVER1	19	10431728	Frame_Shift_Del	DEL	G	TCGA-B4-5835-01A-11D-1669-08	1134779	10431728	48697255	71	14881											
ANKRD27	84079	broad.mit.edu	37	19	33149883	33149883	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	33149883	G	T	33149883	3	4	232	1	0	0	0	0	1	0	0	0	655	933	33	4	3225	4	ANKRD27	19	33149883	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	22718155	33149883	25979100	72	14882											
PSG7	5676	broad.mit.edu	37	19	43439634	43439634	+	RNA	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	43439634	C	A	43439634	1	1	232	0	1	0	0	0	0	0	0	0	12670	690	24	4		4	PSG7	19	43439634	RNA	SNP	C	TCGA-B4-5835-01A-11D-1669-08	10289751	43439634	15689349	73	14883											
ZSCAN18	65982	broad.mit.edu	37	19	58596705	58596705	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	58596705	C	T	58596705	3	4	232	1	0	0	0	0	1	0	0	0	18242	864	30	2	656	2	ZSCAN18	19	58596705	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	15157071	58596705	532278	74	14884											
COMMD7	149951	broad.mit.edu	37	20	31292271	31292271	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	C	31292271	A	C	31292271	3	2	232	1	0	0	0	0	1	0	0	0	3723	98	4	5	166	5	COMMD7	20	31292271	Missense_Mutation	SNP	A	TCGA-B4-5835-01A-11D-1669-08		31292271	31733249	75	14885											
HSF2BP	11077	broad.mit.edu	37	21	45076580	45076580	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	45076580	C	A	45076580	3	1	232	1	0	0	0	0	1	0	0	0	7404	912	32	4	957	4	HSF2BP	21	45076580	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08		45076580	3053315	76	14886											
BIK	638	broad.mit.edu	37	22	43525235	43525252	+	In_Frame_Del	DEL	TGCTGCTGGCGCTGCTGC	TGCTGCTGGCGCTGCTGC	-	rs140238366		TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	-	43525252	TGCTGCTGGCGCTGCTGC	-	43525235	7	5	232	1	0	1	0	1	0	0	0	0	1431	1696	59	0	421	0	BIK	22	43525235	In_Frame_Del	DEL	TGCTGCTGGCGCTGCTGC	TCGA-B4-5835-01A-11D-1669-08		43525235	7779331	77	14887											
CELSR1	9620	broad.mit.edu	37	22	46792575	46792575	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	46792575	G	A	46792575	3	1	232	1	0	0	0	0	1	0	0	0	3223	1087	38	1	3366	1	CELSR1	22	46792575	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	3267340	46792575	4511991	78	14888											
TLR8	51311	broad.mit.edu	37	X	12938993	12938993	+	Nonsense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	12938993	G	T	12938993	4	4	232	1	0	0	0	0	0	1	0	0	15969	943	33	4	1840	4	TLR8	23	12938993	Nonsense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08		12938993	142331567	79	14889											
ACE2	59272	broad.mit.edu	37	X	15618974	15618974	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	C	15618974	T	C	15618974	3	2	232	1	0	0	0	0	1	0	0	0	137	1464	51	3	2428	3	ACE2	23	15618974	Missense_Mutation	SNP	T	TCGA-B4-5835-01A-11D-1669-08	2679981	15618974	139651586	80	14890											
PPEF1	5475	broad.mit.edu	37	X	18822154	18822154	+	Nonsense_Mutation	SNP	G	G	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	18822154	G	T	18822154	4	4	232	1	0	0	0	0	0	1	0	0	12314	1291	45	4	1252	4	PPEF1	23	18822154	Nonsense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	3203180	18822154	136448406	81	14891											
CXorf22	170063	broad.mit.edu	37	X	35993323	35993323	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	35993323	C	A	35993323	3	1	232	1	0	0	0	0	1	0	0	0	4104	826	29	4	2368	4	CXorf22	23	35993323	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	17171169	35993323	119277237	82	14892											
PCDH11X	27328	broad.mit.edu	37	X	91133613	91133613	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	A	91133613	G	A	91133613	3	1	232	1	0	0	0	0	1	0	0	0	11515	971	34	2	2380	2	PCDH11X	23	91133613	Missense_Mutation	SNP	G	TCGA-B4-5835-01A-11D-1669-08	55140290	91133613	64136947	83	14893											
CDR1	1038	broad.mit.edu	37	X	139865791	139865791	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	G	139865791	C	G	139865791	3	3	232	1	0	0	0	0	1	0	0	0	3173	856	30	4	51	4	CDR1	23	139865791	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	48732178	139865791	15404769	84	14894											
PDZD4	57595	broad.mit.edu	37	X	153070051	153070051	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5835-01A-11D-1669-08	TCGA-B4-5835-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c044e9e-8d38-4f35-823c-82f883ebd03f	ea03bb6c-37c3-4ec4-8798-6f0f6d37e2b9	T	153070051	C	T	153070051	3	4	232	1	0	0	0	0	1	0	0	0	11710	768	27	1	1246	1	PDZD4	23	153070051	Missense_Mutation	SNP	C	TCGA-B4-5835-01A-11D-1669-08	13204260	153070051	2200509	85	14895											
DFFB	1677	broad.mit.edu	37	1	3789056	3789056	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	3789056	C	A	3789056	3	1	233	1	0	0	0	0	1	0	0	0	4455	796	28	4	724	4	DFFB	1	3789056	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08		3789056	245461565	1	14896											
MTOR	2475	broad.mit.edu	37	1	11217289	11217289	+	Silent	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	11217289	A	G	11217289	2	3	233	1	0	0	0	0	0	0	0	1	9961	224	8	3		3	MTOR	1	11217289	Silent	SNP	A	TCGA-B4-5836-01A-11D-1669-08	7428233	11217289	238033332	2	14897			1	28		2	2	16	N	A_-	5.039166e-05
MTOR	2475	broad.mit.edu	37	1	11217304	11217305	+	In_Frame_Ins	INS	-	-	TCCTCCCAC			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	TCCTCCCAC	11217305	-	TCCTCCCAC	11217304	7	5	233	1	0	1	1	0	0	0	0	0	9961	214	8	0	3391	0	MTOR	1	11217304	In_Frame_Ins	INS	-	TCGA-B4-5836-01A-11D-1669-08	15	11217304	238033317	3	14898			1	28		2	2	16	N	A_-	5.039166e-05
VPS13D	55187	broad.mit.edu	37	1	12336924	12336926	+	In_Frame_Del	DEL	GAT	GAT	-	rs144696813		TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	12336926	GAT	-	12336924	7	5	233	1	0	1	0	1	0	0	0	0	17204	1045	37	0	3349	0	VPS13D	1	12336924	In_Frame_Del	DEL	GAT	TCGA-B4-5836-01A-11D-1669-08	1119620	12336924	236913697	4	14899											
ZBTB8OS	339487	broad.mit.edu	37	1	33116038	33116038	+	Nonsense_Mutation	SNP	G	G	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	33116038	G	T	33116038	4	4	233	1	0	0	0	0	0	1	0	0	17569	1140	40	4	438	4	ZBTB8OS	1	33116038	Nonsense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	20779114	33116038	216134583	5	14900											
COL9A2	1298	broad.mit.edu	37	1	40768483	40768484	+	Splice_Site	INS	-	-	GGAG	rs3831927	by1000genomes	TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	GGAG	40768484	-	GGAG	40768483	8	5	233	1	0	1	1	0	0	0	1	0	3710	1594	55	0	479	0	COL9A2	1	40768483	Splice_Site	INS	-	TCGA-B4-5836-01A-11D-1669-08	7652445	40768483	208482138	6	14901											
UROD	7389	broad.mit.edu	37	1	45479706	45479706	+	Silent	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	45479706	C	T	45479706	2	4	233	1	0	0	0	0	0	0	0	1	17041	842	30	2		2	UROD	1	45479706	Silent	SNP	C	TCGA-B4-5836-01A-11D-1669-08	4711223	45479706	203770915	7	14902											
FLG	2312	broad.mit.edu	37	1	152277450	152277450	+	Silent	SNP	G	G	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	152277450	G	T	152277450	2	4	233	1	0	0	0	0	0	0	0	1	5929	1219	43	4		4	FLG	1	152277450	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	106797744	152277450	96973171	8	14903											
YOD1	55432	broad.mit.edu	37	1	207222971	207222971	+	Silent	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	207222971	A	G	207222971	2	3	233	1	0	0	0	0	0	0	0	1	17500	175	7	3		3	YOD1	1	207222971	Silent	SNP	A	TCGA-B4-5836-01A-11D-1669-08	54945521	207222971	42027650	9	14904											
CAMK1G	57172	broad.mit.edu	37	1	209781277	209781277	+	Splice_Site	SNP	T	T	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	209781277	T	C	209781277	5	2	233	1	0	0	0	0	0	0	1	0	2600	1507	52	3	656	3	CAMK1G	1	209781277	Splice_Site	SNP	T	TCGA-B4-5836-01A-11D-1669-08	2558306	209781277	39469344	10	14905											
IRF2BP2	359948	broad.mit.edu	37	1	234742916	234742916	+	Silent	SNP	T	T	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	234742916	T	A	234742916	2	1	233	1	0	0	0	0	0	0	0	1	7837	1538	54	5		5	IRF2BP2	1	234742916	Silent	SNP	T	TCGA-B4-5836-01A-11D-1669-08	24961639	234742916	14507705	11	14906											
OR2M2	391194	broad.mit.edu	37	1	248343458	248343458	+	Silent	SNP	C	C	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	248343458	C	A	248343458	2	1	233	1	0	0	0	0	0	0	0	1	11017	610	22	4		4	OR2M2	1	248343458	Silent	SNP	C	TCGA-B4-5836-01A-11D-1669-08	13600542	248343458	907163	12	14907											
DNMT3A	1788	broad.mit.edu	37	2	25463523	25463523	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	25463523	C	G	25463523	3	3	233	1	0	0	0	0	1	0	0	0	4678	768	27	4	603	4	DNMT3A	2	25463523	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08		25463523	217735850	13	14908											
ASXL2	55252	broad.mit.edu	37	2	25972716	25972716	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	25972716	G	C	25972716	3	2	233	1	0	0	0	0	1	0	0	0	1067	942	33	4	2606	4	ASXL2	2	25972716	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	509193	25972716	217226657	14	14909											
KIAA1841	84542	broad.mit.edu	37	2	61308620	61308620	+	Missense_Mutation	SNP	C	C	T	rs141315892		TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	61308620	C	T	61308620	3	4	233	1	0	0	0	0	1	0	0	0	8268	893	31	1	722	1	KIAA1841	2	61308620	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	35335904	61308620	181890753	15	14910											
RAB11FIP5	26056	broad.mit.edu	37	2	73303217	73303217	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	73303217	A	T	73303217	3	4	233	1	0	0	0	0	1	0	0	0	12910	156	6	5	307	5	RAB11FIP5	2	73303217	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08	11994597	73303217	169896156	16	14911											
NCAPH	23397	broad.mit.edu	37	2	97024792	97024792	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	97024792	G	A	97024792	3	1	233	1	0	0	0	0	1	0	0	0	10216	1290	45	2	1256	2	NCAPH	2	97024792	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	23721575	97024792	146174581	17	14912											
VWA3B	200403	broad.mit.edu	37	2	98750303	98750303	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	98750303	G	A	98750303	3	1	233	1	0	0	0	0	1	0	0	0	17253	1059	37	1	911	1	VWA3B	2	98750303	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	1725511	98750303	144449070	18	14913											
DCAF17	80067	broad.mit.edu	37	2	172300079	172300079	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	172300079	A	C	172300079	3	2	233	1	0	0	0	0	1	0	0	0	4271	131	5	5	287	5	DCAF17	2	172300079	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08	73549776	172300079	70899294	19	14914											
VHL	7428	broad.mit.edu	37	3	10183734	10183734	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	10183734	C	A	10183734	4	1	233	1	0	0	0	0	0	1	0	0	17174	893	31	4	205	4	VHL	3	10183734	Nonsense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08		10183734	187838696	20	14915											
PBRM1	55193	broad.mit.edu	37	3	52613209	52613209	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	52613209	C	A	52613209	4	1	233	1	0	0	0	0	0	1	0	0	11498	922	32	4	1546	4	PBRM1	3	52613209	Nonsense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	42429475	52613209	145409221	21	14916											
PXK	54899	broad.mit.edu	37	3	58381438	58381438	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	58381438	G	-	58381438	7	5	233	1	0	1	0	1	0	0	0	0	12862	991	35	0	808	0	PXK	3	58381438	Frame_Shift_Del	DEL	G	TCGA-B4-5836-01A-11D-1669-08	5768229	58381438	139640992	22	14917											
TFG	10342	broad.mit.edu	37	3	100467193	100467193	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	100467193	G	A	100467193	3	1	233	1	0	0	0	0	1	0	0	0	15818	1377	48	2	1047	2	TFG	3	100467193	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	42085755	100467193	97555237	23	14918											
SLC15A2	6565	broad.mit.edu	37	3	121647902	121647903	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	121647903	-	T	121647902	7	5	233	1	0	1	1	0	0	0	0	0	14412	101	4	0	1477	0	SLC15A2	3	121647902	Frame_Shift_Ins	INS	-	TCGA-B4-5836-01A-11D-1669-08	21180709	121647902	76374528	24	14919											
TNIK	23043	broad.mit.edu	37	3	170846555	170846555	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	170846555	C	-	170846555	7	5	233	1	0	1	0	1	0	0	0	0	16325	565	20	0	2433	0	TNIK	3	170846555	Frame_Shift_Del	DEL	C	TCGA-B4-5836-01A-11D-1669-08	49198653	170846555	27175875	25	14920											
YEATS2	55689	broad.mit.edu	37	3	183446551	183446551	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	183446551	C	A	183446551	3	1	233	1	0	0	0	0	1	0	0	0	17484	652	23	4	746	4	YEATS2	3	183446551	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	12599996	183446551	14575879	26	14921											
ZNF141	7700	broad.mit.edu	37	4	367638	367638	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	367638	A	G	367638	3	3	233	1	0	0	0	0	1	0	0	0	17742	14	1	3	1426	3	ZNF141	4	367638	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08		367638	190786638	27	14922											
SH3BP2	6452	broad.mit.edu	37	4	2826453	2826453	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	2826453	G	A	2826453	3	1	233	1	0	0	0	0	1	0	0	0	14258	1087	38	1	622	1	SH3BP2	4	2826453	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	2458815	2826453	188327823	28	14923											
PPARGC1A	10891	broad.mit.edu	37	4	23816122	23816122	+	Silent	SNP	T	T	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	23816122	T	A	23816122	2	1	233	1	0	0	0	0	0	0	0	1	12307	1799	63	5		5	PPARGC1A	4	23816122	Silent	SNP	T	TCGA-B4-5836-01A-11D-1669-08	20989669	23816122	167338154	29	14924											
WDR17	116966	broad.mit.edu	37	4	177050013	177050013	+	Splice_Site	SNP	T	T	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	177050013	T	C	177050013	5	2	233	1	0	0	0	0	0	0	1	0	17289	1652	57	3	1009	3	WDR17	4	177050013	Splice_Site	SNP	T	TCGA-B4-5836-01A-11D-1669-08	153233891	177050013	14104263	30	14925											
PRDM9	56979	broad.mit.edu	37	5	23527407	23527407	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	23527407	G	C	23527407	3	2	233	1	0	0	0	0	1	0	0	0	12473	942	33	4	2248	4	PRDM9	5	23527407	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08		23527407	157387853	31	14926											
UBE2D2	7322	broad.mit.edu	37	5	139003010	139003010	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	139003010	C	T	139003010	3	4	233	1	0	0	0	0	1	0	0	0	16861	681	24	2	384	2	UBE2D2	5	139003010	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	115475603	139003010	41912250	32	14927											
TCERG1	10915	broad.mit.edu	37	5	145836770	145836770	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	145836770	A	G	145836770	3	3	233	1	0	0	0	0	1	0	0	0	15697	217	8	3	320	3	TCERG1	5	145836770	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08	6833760	145836770	35078490	33	14928											
AFAP1L1	134265	broad.mit.edu	37	5	148687091	148687091	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	148687091	G	A	148687091	3	1	233	1	0	0	0	0	1	0	0	0	354	1319	46	2	688	2	AFAP1L1	5	148687091	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	2850321	148687091	32228169	34	14929	195	2									
AFAP1L1	134265	broad.mit.edu	37	5	148687092	148687092	+	Silent	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	148687092	C	T	148687092	2	4	233	1	0	0	0	0	0	0	0	1	354	718	25	2		2	AFAP1L1	5	148687092	Silent	SNP	C	TCGA-B4-5836-01A-11D-1669-08	1	148687092	32228168	35	14930	195	2									
SH3PXD2B	285590	broad.mit.edu	37	5	171766891	171766891	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	171766891	C	-	171766891	7	5	233	1	0	1	0	1	0	0	0	0	14270	508	18	0	1521	0	SH3PXD2B	5	171766891	Frame_Shift_Del	DEL	C	TCGA-B4-5836-01A-11D-1669-08	23079799	171766891	9148369	36	14931											
SRPK1	6732	broad.mit.edu	37	6	35838125	35838125	+	Silent	SNP	T	T	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	35838125	T	C	35838125	2	2	233	1	0	0	0	0	0	0	0	1	15171	1490	52	3		3	SRPK1	6	35838125	Silent	SNP	T	TCGA-B4-5836-01A-11D-1669-08		35838125	135276942	37	14932											
GSTA5	221357	broad.mit.edu	37	6	52699031	52699031	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	52699031	G	C	52699031	3	2	233	1	0	0	0	0	1	0	0	0	6841	942	33	4	358	4	GSTA5	6	52699031	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	16860906	52699031	118416036	38	14933											
L3MBTL3	84456	broad.mit.edu	37	6	130415459	130415459	+	Silent	SNP	G	G	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	130415459	G	T	130415459	2	4	233	1	0	0	0	0	0	0	0	1	8600	1103	39	4		4	L3MBTL3	6	130415459	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	77716428	130415459	40699608	39	14934											
TYW1	55253	broad.mit.edu	37	7	66479413	66479413	+	Silent	SNP	T	T	C	rs145686658	by1000genomes	TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	66479413	T	C	66479413	2	2	233	1	0	0	0	0	0	0	0	1	16830	1567	55	3		3	TYW1	7	66479413	Silent	SNP	T	TCGA-B4-5836-01A-11D-1669-08		66479413	92659250	40	14935											
TECPR1	25851	broad.mit.edu	37	7	97874215	97874215	+	Silent	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	97874215	A	G	97874215	2	3	233	1	0	0	0	0	0	0	0	1	15755	146	6	3		3	TECPR1	7	97874215	Silent	SNP	A	TCGA-B4-5836-01A-11D-1669-08	31394802	97874215	61264448	41	14936											
DCAF13	25879	broad.mit.edu	37	8	104444929	104444929	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	104444929	A	G	104444929	3	3	233	1	0	0	0	0	1	0	0	0	4268	449	16	3	1227	3	DCAF13	8	104444929	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08		104444929	41919093	42	14937											
CNTLN	54875	broad.mit.edu	37	9	17466109	17466109	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	17466109	A	-	17466109	7	5	233	1	0	1	0	1	0	0	0	0	3641	246	9	0	3778	0	CNTLN	9	17466109	Frame_Shift_Del	DEL	A	TCGA-B4-5836-01A-11D-1669-08		17466109	123747322	43	14938											
GAPVD1	26130	broad.mit.edu	37	9	128099797	128099797	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	128099797	T	-	128099797	7	5	233	1	0	1	0	1	0	0	0	0	6246	1493	52	0	2943	0	GAPVD1	9	128099797	Frame_Shift_Del	DEL	T	TCGA-B4-5836-01A-11D-1669-08	110633688	128099797	13113634	44	14939											
MAPKAP1	79109	broad.mit.edu	37	9	128246809	128246810	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	128246810	CT	-	128246809	7	5	233	1	0	1	0	1	0	0	0	0	9295	565	20	0	464	0	MAPKAP1	9	128246809	Frame_Shift_Del	DEL	CT	TCGA-B4-5836-01A-11D-1669-08	147012	128246809	12966622	45	14940											
MED22	6837	broad.mit.edu	37	9	136212036	136212036	+	Silent	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	136212036	G	C	136212036	2	2	233	1	0	0	0	0	0	0	0	1	9447	1103	39	4		4	MED22	9	136212036	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	7965227	136212036	5001395	46	14941											
ACBD7	414149	broad.mit.edu	37	10	15120706	15120706	+	Silent	SNP	T	T	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	15120706	T	A	15120706	2	1	233	1	0	0	0	0	0	0	0	1	127	1451	51	5		5	ACBD7	10	15120706	Silent	SNP	T	TCGA-B4-5836-01A-11D-1669-08		15120706	120414041	47	14942											
PLXDC2	84898	broad.mit.edu	37	10	20465934	20465936	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	20465936	GAA	-	20465934	7	5	233	1	0	1	0	1	0	0	0	0	12125	1058	37	0	920	0	PLXDC2	10	20465934	In_Frame_Del	DEL	GAA	TCGA-B4-5836-01A-11D-1669-08	5345228	20465934	115068813	48	14943											
WAPAL	23063	broad.mit.edu	37	10	88230780	88230780	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	88230780	A	G	88230780	3	3	233	1	0	0	0	0	1	0	0	0	17260	14	1	3	1509	3	WAPAL	10	88230780	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08	67764846	88230780	47303967	49	14944											
NOC3L	64318	broad.mit.edu	37	10	96099569	96099569	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	96099569	A	C	96099569	3	2	233	1	0	0	0	0	1	0	0	0	10521	72	3	5	533	5	NOC3L	10	96099569	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08	7868789	96099569	39435178	50	14945											
ZNF511	118472	broad.mit.edu	37	10	135123289	135123289	+	Silent	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	135123289	G	A	135123289	2	1	233	1	0	0	0	0	0	0	0	1	17967	1132	40	1		1	ZNF511	10	135123289	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	39023720	135123289	411458	51	14946											
MOB2	81532	broad.mit.edu	37	11	1501649	1501649	+	Silent	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	1501649	C	T	1501649	2	4	233	1	0	0	0	0	0	0	0	1	9688	523	19	1		1	MOB2	11	1501649	Silent	SNP	C	TCGA-B4-5836-01A-11D-1669-08		1501649	133504867	52	14947											
CALCA	796	broad.mit.edu	37	11	14991621	14991621	+	Splice_Site	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	14991621	C	T	14991621	5	4	233	1	0	0	0	0	0	0	1	0	2577	521	18	2	510	2	CALCA	11	14991621	Splice_Site	SNP	C	TCGA-B4-5836-01A-11D-1669-08	13489972	14991621	120014895	53	14948											
ZNF408	79797	broad.mit.edu	37	11	46726525	46726525	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	46726525	A	T	46726525	3	4	233	1	0	0	0	0	1	0	0	0	17900	69	3	5	1325	5	ZNF408	11	46726525	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08	31734904	46726525	88279991	54	14949											
C11orf30	56946	broad.mit.edu	37	11	76171050	76171050	+	Silent	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	76171050	A	G	76171050	2	3	233	1	0	0	0	0	0	0	0	1	1638	117	5	3		3	C11orf30	11	76171050	Silent	SNP	A	TCGA-B4-5836-01A-11D-1669-08	29444525	76171050	58835466	55	14950											
CCDC82	79780	broad.mit.edu	37	11	96116619	96116619	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	96116619	A	C	96116619	3	2	233	1	0	0	0	0	1	0	0	0	2858	130	5	5	853	5	CCDC82	11	96116619	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08	19945569	96116619	38889897	56	14951											
C11orf63	79864	broad.mit.edu	37	11	122775925	122775925	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	122775925	T	C	122775925	3	2	233	1	0	0	0	0	1	0	0	0	1656	1609	56	3	920	3	C11orf63	11	122775925	Missense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08	26659306	122775925	12230591	57	14952											
FGF6	2251	broad.mit.edu	37	12	4554545	4554545	+	Silent	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	4554545	C	T	4554545	2	4	233	1	0	0	0	0	0	0	0	1	5863	726	26	2		2	FGF6	12	4554545	Silent	SNP	C	TCGA-B4-5836-01A-11D-1669-08		4554545	129297350	58	14953											
SCN8A	6334	broad.mit.edu	37	12	52100421	52100421	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	52100421	G	C	52100421	3	2	233	1	0	0	0	0	1	0	0	0	13937	1020	36	4	1595	4	SCN8A	12	52100421	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	47545876	52100421	81751474	59	14954											
NEUROD4	58158	broad.mit.edu	37	12	55421030	55421030	+	Silent	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	55421030	G	C	55421030	2	2	233	1	0	0	0	0	0	0	0	1	10357	1248	44	4		4	NEUROD4	12	55421030	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	3320609	55421030	78430865	60	14955											
TMEM5	10329	broad.mit.edu	37	12	64202742	64202742	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	64202742	C	A	64202742	3	1	233	1	0	0	0	0	1	0	0	0	16186	565	20	4	1224	4	TMEM5	12	64202742	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	8781712	64202742	69649153	61	14956											
PPFIA2	8499	broad.mit.edu	37	12	81671129	81671129	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	81671129	T	C	81671129	3	2	233	1	0	0	0	0	1	0	0	0	12317	1617	56	3	516	3	PPFIA2	12	81671129	Missense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08	17468387	81671129	52180766	62	14957											
TBX5	6910	broad.mit.edu	37	12	114836387	114836387	+	Silent	SNP	T	T	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	114836387	T	G	114836387	2	3	233	1	0	0	0	0	0	0	0	1	15673	1451	51	5		5	TBX5	12	114836387	Silent	SNP	T	TCGA-B4-5836-01A-11D-1669-08	33165258	114836387	19015508	63	14958											
PAN3	255967	broad.mit.edu	37	13	28750672	28750672	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	28750672	A	T	28750672	3	4	233	1	0	0	0	0	1	0	0	0	11422	188	7	5	605	5	PAN3	13	28750672	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08		28750672	86419206	64	14959											
TRPC4	7223	broad.mit.edu	37	13	38266346	38266346	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	38266346	C	A	38266346	3	1	233	1	0	0	0	0	1	0	0	0	16592	478	17	4	1956	4	TRPC4	13	38266346	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	9515674	38266346	76903532	65	14960											
IPO5	3843	broad.mit.edu	37	13	98658520	98658520	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	98658520	C	T	98658520	3	4	233	1	0	0	0	0	1	0	0	0	7803	768	27	1	1746	1	IPO5	13	98658520	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	60392174	98658520	16511358	66	14961											
OR4K17	390436	broad.mit.edu	37	14	20585784	20585784	+	Missense_Mutation	SNP	C	C	A	rs142758414		TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	20585784	C	A	20585784	3	1	233	1	0	0	0	0	1	0	0	0	11078	506	18	4	221	4	OR4K17	14	20585784	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08		20585784	86763756	67	14962											
MYH7	4625	broad.mit.edu	37	14	23886884	23886884	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	23886884	G	A	23886884	3	1	233	1	0	0	0	0	1	0	0	0	10046	1203	42	2	1666	2	MYH7	14	23886884	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	3301100	23886884	83462656	68	14963											
MKRN3	7681	broad.mit.edu	37	15	23811291	23811291	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	23811291	T	A	23811291	3	1	233	1	0	0	0	0	1	0	0	0	9615	1609	56	5	364	5	MKRN3	15	23811291	Missense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08		23811291	78720101	69	14964											
SPTBN5	51332	broad.mit.edu	37	15	42169539	42169539	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	42169539	G	C	42169539	3	2	233	1	0	0	0	0	1	0	0	0	15134	1136	40	4	7742	4	SPTBN5	15	42169539	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	18358248	42169539	60361853	70	14965											
DMXL2	23312	broad.mit.edu	37	15	51828461	51828461	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	51828461	G	C	51828461	3	2	233	1	0	0	0	0	1	0	0	0	4597	1029	36	4	7025	4	DMXL2	15	51828461	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	9658922	51828461	50702931	71	14966											
WDR90	197335	broad.mit.edu	37	16	700677	700677	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	700677	A	G	700677	3	3	233	1	0	0	0	0	1	0	0	0	17349	43	2	3	545	3	WDR90	16	700677	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08		700677	89654076	72	14967											
PRPF8	10594	broad.mit.edu	37	17	1577101	1577101	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	1577101	T	A	1577101	3	1	233	1	0	0	0	0	1	0	0	0	12585	1754	61	5	3710	5	PRPF8	17	1577101	Missense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08		1577101	79618109	73	14968											
PIK3R6	146850	broad.mit.edu	37	17	8732128	8732128	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	8732128	C	T	8732128	3	4	233	1	0	0	0	0	1	0	0	0	11930	652	23	1	1234	1	PIK3R6	17	8732128	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	7155027	8732128	72463082	74	14969											
MYOCD	93649	broad.mit.edu	37	17	12642618	12642618	+	Silent	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	12642618	C	T	12642618	2	4	233	1	0	0	0	0	0	0	0	1	10094	610	22	2		2	MYOCD	17	12642618	Silent	SNP	C	TCGA-B4-5836-01A-11D-1669-08	3910490	12642618	68552592	75	14970											
PMP22	5376	broad.mit.edu	37	17	15134248	15134248	+	Missense_Mutation	SNP	G	G	A	rs28936682		TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	15134248	G	A	15134248	3	1	233	1	0	0	0	0	1	0	0	0	12146	1086	38	1	17	1	PMP22	17	15134248	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	2491630	15134248	66060962	76	14971											
TAF15	8148	broad.mit.edu	37	17	34174079	34174079	+	Silent	SNP	G	G	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	34174079	G	T	34174079	2	4	233	1	0	0	0	0	0	0	0	1	15530	1363	47	4		4	TAF15	17	34174079	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	19039831	34174079	47021131	77	14972											
KRT34	3885	broad.mit.edu	37	17	39535273	39535273	+	Silent	SNP	G	G	A	rs141543111	byFrequency	TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	39535273	G	A	39535273	2	1	233	1	0	0	0	0	0	0	0	1	8478	1136	40	1		1	KRT34	17	39535273	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	5361194	39535273	41659937	78	14973											
G6PC3	92579	broad.mit.edu	37	17	42148528	42148528	+	Silent	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	42148528	G	A	42148528	2	1	233	1	0	0	0	0	0	0	0	1	6152	1020	36	2		2	G6PC3	17	42148528	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	2613255	42148528	39046682	79	14974											
UTP18	51096	broad.mit.edu	37	17	49353345	49353345	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	49353345	T	A	49353345	3	1	233	1	0	0	0	0	1	0	0	0	17110	1522	53	5	852	5	UTP18	17	49353345	Missense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08	7204817	49353345	31841865	80	14975											
JMJD6	23210	broad.mit.edu	37	17	74716493	74716493	+	Silent	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	74716493	G	A	74716493	2	1	233	1	0	0	0	0	0	0	0	1	7960	1335	47	2		2	JMJD6	17	74716493	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	25363148	74716493	6478717	81	14976											
RAB40B	10966	broad.mit.edu	37	17	80615875	80615875	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	80615875	C	T	80615875	3	4	233	1	0	0	0	0	1	0	0	0	12954	681	24	2	139	2	RAB40B	17	80615875	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	5899382	80615875	579335	82	14977											
METTL4	64863	broad.mit.edu	37	18	2544671	2544671	+	Nonsense_Mutation	SNP	T	T	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	2544671	T	A	2544671	4	1	233	1	0	0	0	0	0	1	0	0	9509	1850	64	5	268	5	METTL4	18	2544671	Nonsense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08		2544671	75532577	83	14978											
LPIN2	9663	broad.mit.edu	37	18	2931293	2931293	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	2931293	G	A	2931293	3	1	233	1	0	0	0	0	1	0	0	0	8926	1000	35	2	1321	2	LPIN2	18	2931293	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	386622	2931293	75145955	84	14979											
ZNF397	84307	broad.mit.edu	37	18	32822516	32822516	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	32822516	G	T	32822516	3	4	233	1	0	0	0	0	1	0	0	0	17895	942	33	4	84	4	ZNF397	18	32822516	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	29891223	32822516	45254732	85	14980											
ATP13A1	57130	broad.mit.edu	37	19	19758234	19758234	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	19758234	G	A	19758234	3	1	233	1	0	0	0	0	1	0	0	0	1123	1174	41	2	741	2	ATP13A1	19	19758234	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08		19758234	39370749	86	14981											
RHPN2	85415	broad.mit.edu	37	19	33471132	33471132	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	33471132	T	A	33471132	3	1	233	1	0	0	0	0	1	0	0	0	13364	1493	52	5	233	5	RHPN2	19	33471132	Missense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08	13712898	33471132	25657851	87	14982	196	2									
RHPN2	85415	broad.mit.edu	37	19	33471138	33471138	+	Missense_Mutation	SNP	C	C	G	rs147967421		TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	33471138	C	G	33471138	3	3	233	1	0	0	0	0	1	0	0	0	13364	536	19	4	239	4	RHPN2	19	33471138	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	6	33471138	25657845	88	14983	196	2									
TMEM91	641649	broad.mit.edu	37	19	41888745	41888745	+	Silent	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	41888745	C	T	41888745	2	4	233	1	0	0	0	0	0	0	0	1	16232	535	19	1		1	TMEM91	19	41888745	Silent	SNP	C	TCGA-B4-5836-01A-11D-1669-08	8417607	41888745	17240238	89	14984											
ZNF404	342908	broad.mit.edu	37	19	44377272	44377272	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	44377272	C	T	44377272	3	4	233	1	0	0	0	0	1	0	0	0	17898	478	17	2	568	2	ZNF404	19	44377272	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	2488527	44377272	14751711	90	14985											
SIX5	147912	broad.mit.edu	37	19	46268862	46268862	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	46268862	A	G	46268862	3	3	233	1	0	0	0	0	1	0	0	0	14363	188	7	3	106	3	SIX5	19	46268862	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08	1891590	46268862	12860121	91	14986											
ZNF460	10794	broad.mit.edu	37	19	57803200	57803200	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	57803200	C	A	57803200	3	1	233	1	0	0	0	0	1	0	0	0	17936	652	23	4	1301	4	ZNF460	19	57803200	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	11534338	57803200	1325783	92	14987											
ESF1	51575	broad.mit.edu	37	20	13695669	13695669	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	13695669	T	C	13695669	3	2	233	1	0	0	0	0	1	0	0	0	5253	1783	62	3	151	3	ESF1	20	13695669	Missense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08		13695669	49329851	93	14988											
EYA2	2139	broad.mit.edu	37	20	45618709	45618709	+	Silent	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	45618709	G	C	45618709	2	2	233	1	0	0	0	0	0	0	0	1	5331	1277	45	4		4	EYA2	20	45618709	Silent	SNP	G	TCGA-B4-5836-01A-11D-1669-08	31923040	45618709	17406811	94	14989											
LCA5L	150082	broad.mit.edu	37	21	40795155	40795155	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	40795155	T	C	40795155	3	2	233	1	0	0	0	0	1	0	0	0	8664	1493	52	3	1452	3	LCA5L	21	40795155	Missense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08		40795155	7334740	95	14990											
HPS4	89781	broad.mit.edu	37	22	26873048	26873048	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	26873048	A	T	26873048	3	4	233	1	0	0	0	0	1	0	0	0	7348	188	7	5	1983	5	HPS4	22	26873048	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08		26873048	24431518	96	14991											
MCM5	4174	broad.mit.edu	37	22	35812725	35812725	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	G	35812725	A	G	35812725	3	3	233	1	0	0	0	0	1	0	0	0	9397	43	2	3	1550	3	MCM5	22	35812725	Missense_Mutation	SNP	A	TCGA-B4-5836-01A-11D-1669-08	8939677	35812725	15491841	97	14992											
FAM83F	113828	broad.mit.edu	37	22	40417856	40417856	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	40417856	A	-	40417856	7	5	233	1	0	1	0	1	0	0	0	0	5645	131	5	0	1356	0	FAM83F	22	40417856	Frame_Shift_Del	DEL	A	TCGA-B4-5836-01A-11D-1669-08	4605131	40417856	10886710	98	14993											
FAM47C	442444	broad.mit.edu	37	X	37026817	37026817	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	T	37026817	C	T	37026817	3	4	233	1	0	0	0	0	1	0	0	0	5578	739	26	2	336	2	FAM47C	23	37026817	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08		37026817	118243743	99	14994											
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-	rs72445954		TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	38079978	GCA	-	38079976	7	5	233	1	0	1	0	1	0	0	0	0	15176	1087	38	0	1364	0	SRPX	23	38079976	In_Frame_Del	DEL	GCA	TCGA-B4-5836-01A-11D-1669-08	1053159	38079976	117190584	100	14995											
MED12	9968	broad.mit.edu	37	X	70345894	70345894	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	70345894	G	A	70345894	3	1	233	1	0	0	0	0	1	0	0	0	9435	1174	41	2	2501	2	MED12	23	70345894	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	32265918	70345894	84924666	101	14996											
PHKA1	5255	broad.mit.edu	37	X	71813085	71813085	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	71813085	G	C	71813085	3	2	233	1	0	0	0	0	1	0	0	0	11850	1174	41	4	575	4	PHKA1	23	71813085	Missense_Mutation	SNP	G	TCGA-B4-5836-01A-11D-1669-08	1467191	71813085	83457475	102	14997											
SLC16A2	6567	broad.mit.edu	37	X	73745646	73745646	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	73745646	T	C	73745646	3	2	233	1	0	0	0	0	1	0	0	0	14421	1493	52	3	1324	3	SLC16A2	23	73745646	Missense_Mutation	SNP	T	TCGA-B4-5836-01A-11D-1669-08	1932561	73745646	81524914	103	14998											
GPRASP1	9737	broad.mit.edu	37	X	101911485	101911487	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	-	101911487	GAA	-	101911485	7	5	233	1	0	1	0	1	0	0	0	0	6729	1291	45	0	2646	0	GPRASP1	23	101911485	In_Frame_Del	DEL	GAA	TCGA-B4-5836-01A-11D-1669-08	28165839	101911485	53359075	104	14999											
SAGE1	55511	broad.mit.edu	37	X	134978476	134978476	+	Silent	SNP	A	A	C			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	C	134978476	A	C	134978476	2	2	233	1	0	0	0	0	0	0	0	1	13822	117	5	5		5	SAGE1	23	134978476	Silent	SNP	A	TCGA-B4-5836-01A-11D-1669-08	33066991	134978476	20292084	105	15000											
MECP2	4204	broad.mit.edu	37	X	153296615	153296615	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5836-01A-11D-1669-08	TCGA-B4-5836-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c0a52d36-24e6-4b0c-ba1b-d8e2919005b7	703104ed-f51f-4431-be13-5d4b3d542b46	A	153296615	C	A	153296615	3	1	233	1	0	0	0	0	1	0	0	0	9430	478	17	4	800	4	MECP2	23	153296615	Missense_Mutation	SNP	C	TCGA-B4-5836-01A-11D-1669-08	18318139	153296615	1973945	106	15001											
LRIG2	9860	broad.mit.edu	37	1	113661909	113661909	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	113661909	A	T	113661909	3	4	234	1	0	0	0	0	1	0	0	0	8952	391	14	5	2801	5	LRIG2	1	113661909	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08		113661909	135588712	1	15002											
PI4KB	5298	broad.mit.edu	37	1	151288321	151288321	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	151288321	C	T	151288321	3	4	234	1	0	0	0	0	1	0	0	0	11881	710	25	2	1857	2	PI4KB	1	151288321	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	37626412	151288321	97962300	2	15003											
DCST2	127579	broad.mit.edu	37	1	155004243	155004243	+	Silent	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	155004243	C	T	155004243	2	4	234	1	0	0	0	0	0	0	0	1	4305	622	22	2		2	DCST2	1	155004243	Silent	SNP	C	TCGA-B4-5838-01A-11D-1669-08	3715922	155004243	94246378	3	15004											
IQGAP3	128239	broad.mit.edu	37	1	156521627	156521627	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	156521627	A	G	156521627	3	3	234	1	0	0	0	0	1	0	0	0	7823	188	7	3	3387	3	IQGAP3	1	156521627	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	1517384	156521627	92728994	4	15005											
OR6F1	343169	broad.mit.edu	37	1	247875312	247875312	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	247875312	A	G	247875312	3	3	234	1	0	0	0	0	1	0	0	0	11208	304	11	3	184	3	OR6F1	1	247875312	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	91353685	247875312	1375309	5	15006											
MGAT4A	11320	broad.mit.edu	37	2	99294822	99294822	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	99294822	G	C	99294822	3	2	234	1	0	0	0	0	1	0	0	0	9552	1281	45	4	1558	4	MGAT4A	2	99294822	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08		99294822	143904551	6	15007											
LIMS2	55679	broad.mit.edu	37	2	128398541	128398547	+	Frame_Shift_Del	DEL	TCACACT	TCACACT	-			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	-	128398547	TCACACT	-	128398541	7	5	234	1	0	1	0	1	0	0	0	0	8811	1551	54	0	358	0	LIMS2	2	128398541	Frame_Shift_Del	DEL	TCACACT	TCGA-B4-5838-01A-11D-1669-08	29103719	128398541	114800832	7	15008											
UBXN4	23190	broad.mit.edu	37	2	136511791	136511791	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	136511791	A	C	136511791	3	2	234	1	0	0	0	0	1	0	0	0	16928	101	4	5	291	5	UBXN4	2	136511791	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	8113250	136511791	106687582	8	15009											
CDK5R2	8941	broad.mit.edu	37	2	219825193	219825193	+	Silent	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	219825193	C	T	219825193	2	4	234	1	0	0	0	0	0	0	0	1	3146	506	18	2		2	CDK5R2	2	219825193	Silent	SNP	C	TCGA-B4-5838-01A-11D-1669-08	83313402	219825193	23374180	9	15010											
SP140L	93349	broad.mit.edu	37	2	231193481	231193481	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	231193481	C	G	231193481	3	3	234	1	0	0	0	0	1	0	0	0	14976	535	19	4	48	4	SP140L	2	231193481	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	11368288	231193481	12005892	10	15011											
SCN11A	11280	broad.mit.edu	37	3	38950499	38950499	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	38950499	C	G	38950499	3	3	234	1	0	0	0	0	1	0	0	0	13926	864	30	4	4159	4	SCN11A	3	38950499	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08		38950499	159071931	11	15012											
BAP1	8314	broad.mit.edu	37	3	52436403	52436403	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	-	52436403	G	-	52436403	7	5	234	1	0	1	0	1	0	0	0	0	1311	1103	39	0	102	0	BAP1	3	52436403	Frame_Shift_Del	DEL	G	TCGA-B4-5838-01A-11D-1669-08	13485904	52436403	145586027	12	15013											
TKT	7086	broad.mit.edu	37	3	53262142	53262142	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	53262142	G	T	53262142	3	4	234	1	0	0	0	0	1	0	0	0	15946	1252	44	4	380	4	TKT	3	53262142	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08	825739	53262142	144760288	13	15014											
TMEM39A	55254	broad.mit.edu	37	3	119155755	119155755	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	119155755	A	C	119155755	3	2	234	1	0	0	0	0	1	0	0	0	16173	217	8	5	483	5	TMEM39A	3	119155755	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	65893613	119155755	78866675	14	15015											
EXOC1	55763	broad.mit.edu	37	4	56768547	56768547	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	56768547	G	A	56768547	3	1	234	1	0	0	0	0	1	0	0	0	5303	1203	42	2	2441	2	EXOC1	4	56768547	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08		56768547	134385729	15	15016											
MAML3	55534	broad.mit.edu	37	4	140811971	140811971	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	140811971	G	A	140811971	3	1	234	1	0	0	0	0	1	0	0	0	9214	1203	42	2	2805	2	MAML3	4	140811971	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08	84043424	140811971	50342305	16	15017											
RAI14	26064	broad.mit.edu	37	5	34757654	34757654	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	34757654	G	C	34757654	3	2	234	1	0	0	0	0	1	0	0	0	13021	1116	39	4	189	4	RAI14	5	34757654	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08		34757654	146157606	17	15018											
FGF10	2255	broad.mit.edu	37	5	44388667	44388667	+	Missense_Mutation	SNP	G	G	T	rs146669375		TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	44388667	G	T	44388667	3	4	234	1	0	0	0	0	1	0	0	0	5846	1000	35	4	520	4	FGF10	5	44388667	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08	9631013	44388667	136526593	18	15019											
SLC12A2	6558	broad.mit.edu	37	5	127484471	127484471	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	127484471	C	T	127484471	3	4	234	1	0	0	0	0	1	0	0	0	14396	594	21	2	1953	2	SLC12A2	5	127484471	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	83095804	127484471	53430789	19	15020											
PCDHGA12	26025	broad.mit.edu	37	5	140811159	140811159	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	140811159	G	T	140811159	3	4	234	1	0	0	0	0	1	0	0	0	11560	1000	35	4	835	4	PCDHGA12	5	140811159	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08	13326688	140811159	40104101	20	15021											
HMMR	3161	broad.mit.edu	37	5	162910059	162910059	+	Silent	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	162910059	A	G	162910059	2	3	234	1	0	0	0	0	0	0	0	1	7249	349	13	3		3	HMMR	5	162910059	Silent	SNP	A	TCGA-B4-5838-01A-11D-1669-08	22098900	162910059	18005201	21	15022											
RARS	5917	broad.mit.edu	37	5	167922351	167922351	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	167922351	C	G	167922351	3	3	234	1	0	0	0	0	1	0	0	0	13071	797	28	4	633	4	RARS	5	167922351	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	5012292	167922351	12992909	22	15023											
NSD1	64324	broad.mit.edu	37	5	176684057	176684057	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	176684057	C	A	176684057	3	1	234	1	0	0	0	0	1	0	0	0	10676	594	21	4	4917	4	NSD1	5	176684057	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	8761706	176684057	4231203	23	15024											
NUP153	9972	broad.mit.edu	37	6	17706532	17706532	+	Nonsense_Mutation	SNP	G	G	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	17706532	G	C	17706532	4	2	234	1	0	0	0	0	0	1	0	0	10762	1256	44	4	4428	4	NUP153	6	17706532	Nonsense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08		17706532	153408535	24	15025											
MCM9	254394	broad.mit.edu	37	6	119252784	119252784	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	-	119252784	A	-	119252784	7	5	234	1	0	1	0	1	0	0	0	0	9401	214	8	0	1094	0	MCM9	6	119252784	Frame_Shift_Del	DEL	A	TCGA-B4-5838-01A-11D-1669-08	101546252	119252784	51862283	25	15026											
AQP1	358	broad.mit.edu	37	7	30951547	30951552	+	In_Frame_Del	DEL	AGCTCT	AGCTCT	-			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	-	30951552	AGCTCT	-	30951547	7	5	234	1	0	1	0	1	0	0	0	0	821	72	3	0	25	0	AQP1	7	30951547	In_Frame_Del	DEL	AGCTCT	TCGA-B4-5838-01A-11D-1669-08		30951547	128187116	26	15027											
GCK	2645	broad.mit.edu	37	7	44191996	44191996	+	Silent	SNP	C	C	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	44191996	C	G	44191996	2	3	234	1	0	0	0	0	0	0	0	1	6300	581	21	4		4	GCK	7	44191996	Silent	SNP	C	TCGA-B4-5838-01A-11D-1669-08	13240449	44191996	114946667	27	15028											
SRRT	51593	broad.mit.edu	37	7	100485480	100485480	+	Splice_Site	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	100485480	A	G	100485480	5	3	234	1	0	0	0	0	0	0	1	0	15184	318	11	3	2388	3	SRRT	7	100485480	Splice_Site	SNP	A	TCGA-B4-5838-01A-11D-1669-08	56293484	100485480	58653183	28	15029											
CUX1	1523	broad.mit.edu	37	7	101754986	101754986	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	101754986	A	C	101754986	3	2	234	1	0	0	0	0	1	0	0	0	4066	188	7	5	632	5	CUX1	7	101754986	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	1269506	101754986	57383677	29	15030											
RBM28	55131	broad.mit.edu	37	7	127964664	127964664	+	Silent	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	127964664	C	T	127964664	2	4	234	1	0	0	0	0	0	0	0	1	13141	871	31	1		1	RBM28	7	127964664	Silent	SNP	C	TCGA-B4-5838-01A-11D-1669-08	26209678	127964664	31173999	30	15031											
CSMD1	64478	broad.mit.edu	37	8	3224564	3224564	+	Silent	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	3224564	G	A	3224564	2	1	234	1	0	0	0	0	0	0	0	1	3946	1280	45	2		2	CSMD1	8	3224564	Silent	SNP	G	TCGA-B4-5838-01A-11D-1669-08		3224564	143139458	31	15032											
ZDHHC2	51201	broad.mit.edu	37	8	17067900	17067900	+	Silent	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	17067900	A	G	17067900	2	3	234	1	0	0	0	0	0	0	0	1	17622	407	15	3		3	ZDHHC2	8	17067900	Silent	SNP	A	TCGA-B4-5838-01A-11D-1669-08	13843336	17067900	129296122	32	15033											
XPO7	23039	broad.mit.edu	37	8	21844736	21844736	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	21844736	T	G	21844736	3	3	234	1	0	0	0	0	1	0	0	0	17461	1809	63	5	1768	5	XPO7	8	21844736	Missense_Mutation	SNP	T	TCGA-B4-5838-01A-11D-1669-08	4776836	21844736	124519286	33	15034											
GPT	2875	broad.mit.edu	37	8	145730220	145730220	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	145730220	A	G	145730220	3	3	234	1	0	0	0	0	1	0	0	0	6744	63	3	3	329	3	GPT	8	145730220	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	123885484	145730220	633802	34	15035											
TSTD2	158427	broad.mit.edu	37	9	100367110	100367110	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	100367110	A	T	100367110	3	4	234	1	0	0	0	0	1	0	0	0	16687	333	12	5	407	5	TSTD2	9	100367110	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08		100367110	40846321	35	15036											
TSTD2	158427	broad.mit.edu	37	9	100380108	100380108	+	Silent	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	100380108	G	A	100380108	2	1	234	1	0	0	0	0	0	0	0	1	16687	1252	44	2		2	TSTD2	9	100380108	Silent	SNP	G	TCGA-B4-5838-01A-11D-1669-08	12998	100380108	40833323	36	15037											
FAM129B	64855	broad.mit.edu	37	9	130287400	130287400	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	130287400	C	T	130287400	3	4	234	1	0	0	0	0	1	0	0	0	5441	710	25	2	1926	2	FAM129B	9	130287400	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	29907292	130287400	10926031	37	15038											
POMT1	10585	broad.mit.edu	37	9	134385344	134385344	+	Silent	SNP	C	C	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	134385344	C	G	134385344	2	3	234	1	0	0	0	0	0	0	0	1	12252	842	30	4		4	POMT1	9	134385344	Silent	SNP	C	TCGA-B4-5838-01A-11D-1669-08	4097944	134385344	6828087	38	15039											
FAM196A	642938	broad.mit.edu	37	10	128974642	128974642	+	Silent	SNP	G	G	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	128974642	G	T	128974642	2	4	234	1	0	0	0	0	0	0	0	1	5532	1103	39	4		4	FAM196A	10	128974642	Silent	SNP	G	TCGA-B4-5838-01A-11D-1669-08		128974642	6560105	39	15040											
GAS2	2620	broad.mit.edu	37	11	22770733	22770733	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	22770733	G	A	22770733	3	1	234	1	0	0	0	0	1	0	0	0	6252	1319	46	2	559	2	GAS2	11	22770733	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08		22770733	112235783	40	15041											
TRAF6	7189	broad.mit.edu	37	11	36511852	36511852	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	36511852	C	T	36511852	3	4	234	1	0	0	0	0	1	0	0	0	16457	922	32	2	467	2	TRAF6	11	36511852	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	13741119	36511852	98494664	41	15042											
RAPSN	5913	broad.mit.edu	37	11	47463274	47463274	+	Silent	SNP	G	G	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	47463274	G	T	47463274	2	4	234	1	0	0	0	0	0	0	0	1	13064	1335	47	4		4	RAPSN	11	47463274	Silent	SNP	G	TCGA-B4-5838-01A-11D-1669-08	10951422	47463274	87543242	42	15043											
AHNAK	79026	broad.mit.edu	37	11	62291579	62291579	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	62291579	C	G	62291579	3	3	234	1	0	0	0	0	1	0	0	0	414	507	18	4	7482	4	AHNAK	11	62291579	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	14828305	62291579	72714937	43	15044											
ARHGEF17	9828	broad.mit.edu	37	11	73071410	73071410	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	73071410	G	C	73071410	3	2	234	1	0	0	0	0	1	0	0	0	900	1174	41	4	4294	4	ARHGEF17	11	73071410	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08	10779831	73071410	61935106	44	15045											
GRM5	2915	broad.mit.edu	37	11	88242235	88242235	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	-	88242235	C	-	88242235	7	5	234	1	0	1	0	1	0	0	0	0	6807	739	26	0	478	0	GRM5	11	88242235	Frame_Shift_Del	DEL	C	TCGA-B4-5838-01A-11D-1669-08	15170825	88242235	46764281	45	15046											
TMPRSS13	84000	broad.mit.edu	37	11	117789550	117789550	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	117789550	C	T	117789550	3	4	234	1	0	0	0	0	1	0	0	0	16257	710	25	2	1726	2	TMPRSS13	11	117789550	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	29547315	117789550	17216966	46	15047											
ZNF202	7753	broad.mit.edu	37	11	123597460	123597460	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	123597460	C	T	123597460	3	4	234	1	0	0	0	0	1	0	0	0	17775	826	29	2	758	2	ZNF202	11	123597460	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	5807910	123597460	11409056	47	15048											
FLI1	2313	broad.mit.edu	37	11	128680431	128680431	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	128680431	G	A	128680431	3	1	234	1	0	0	0	0	1	0	0	0	5931	1175	41	2	941	2	FLI1	11	128680431	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08	5082971	128680431	6326085	48	15049											
CD163L1	283316	broad.mit.edu	37	12	7510009	7510009	+	Silent	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	7510009	G	A	7510009	2	1	234	1	0	0	0	0	0	0	0	1	2970	1335	47	2		2	CD163L1	12	7510009	Silent	SNP	G	TCGA-B4-5838-01A-11D-1669-08		7510009	126341886	49	15050											
ITGA7	3679	broad.mit.edu	37	12	56101360	56101360	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	56101360	A	G	56101360	3	3	234	1	0	0	0	0	1	0	0	0	7888	188	7	3	3584	3	ITGA7	12	56101360	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	48591351	56101360	77750535	50	15051											
TAC3	6866	broad.mit.edu	37	12	57409500	57409500	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	57409500	C	A	57409500	4	1	234	1	0	0	0	0	0	1	0	0	15511	864	30	4	303	4	TAC3	12	57409500	Nonsense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	1308140	57409500	76442395	51	15052											
C12orf76	400073	broad.mit.edu	37	12	110511326	110511326	+	Translation_Start_Site	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	110511326	C	T	110511326	1	4	234	1	0	0	0	0	0	0	0	0	1717	580	20	2		2	C12orf76	12	110511326	Translation_Start_Site	SNP	C	TCGA-B4-5838-01A-11D-1669-08	53101826	110511326	23340569	52	15053											
DTX1	1840	broad.mit.edu	37	12	113496211	113496211	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	113496211	T	C	113496211	3	2	234	1	0	0	0	0	1	0	0	0	4795	1522	53	3	216	3	DTX1	12	113496211	Missense_Mutation	SNP	T	TCGA-B4-5838-01A-11D-1669-08	2984885	113496211	20355684	53	15054											
RPL21	6144	broad.mit.edu	37	13	27828378	27828378	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	27828378	A	T	27828378	3	4	234	1	0	0	0	0	1	0	0	0	13580	449	16	5	95	5	RPL21	13	27828378	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08		27828378	87341500	54	15055											
FLT1	2321	broad.mit.edu	37	13	29001360	29001360	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	29001360	C	T	29001360	3	4	234	1	0	0	0	0	1	0	0	0	5948	594	21	2	2991	2	FLT1	13	29001360	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	1172982	29001360	86168518	55	15056											
OR11H4	390442	broad.mit.edu	37	14	20711760	20711760	+	Silent	SNP	A	A	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	20711760	A	T	20711760	2	4	234	1	0	0	0	0	0	0	0	1	10935	349	13	5		5	OR11H4	14	20711760	Silent	SNP	A	TCGA-B4-5838-01A-11D-1669-08		20711760	86637780	56	15057											
ZNF219	51222	broad.mit.edu	37	14	21559281	21559281	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	21559281	C	G	21559281	3	3	234	1	0	0	0	0	1	0	0	0	17785	478	17	4	589	4	ZNF219	14	21559281	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	847521	21559281	85790259	57	15058											
PNMA1	9240	broad.mit.edu	37	14	74179538	74179538	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	74179538	C	T	74179538	3	4	234	1	0	0	0	0	1	0	0	0	12160	864	30	2	260	2	PNMA1	14	74179538	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	52620257	74179538	33170002	58	15059											
TJP1	7082	broad.mit.edu	37	15	30026551	30026551	+	Silent	SNP	T	T	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	30026551	T	C	30026551	2	2	234	1	0	0	0	0	0	0	0	1	15941	1606	56	3		3	TJP1	15	30026551	Silent	SNP	T	TCGA-B4-5838-01A-11D-1669-08		30026551	72504841	59	15060											
CHTF18	63922	broad.mit.edu	37	16	840647	840647	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	840647	C	T	840647	3	4	234	1	0	0	0	0	1	0	0	0	3416	536	19	1	901	1	CHTF18	16	840647	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08		840647	89514106	60	15061											
SEC14L5	9717	broad.mit.edu	37	16	5040783	5040783	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	5040783	G	A	5040783	3	1	234	1	0	0	0	0	1	0	0	0	13998	1291	45	2	375	2	SEC14L5	16	5040783	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08	4200136	5040783	85313970	61	15062											
CORO1A	11151	broad.mit.edu	37	16	30198794	30198794	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	30198794	G	A	30198794	3	1	234	1	0	0	0	0	1	0	0	0	3755	1029	36	2	746	2	CORO1A	16	30198794	Missense_Mutation	SNP	G	TCGA-B4-5838-01A-11D-1669-08	25158011	30198794	60155959	62	15063											
HYDIN	54768	broad.mit.edu	37	16	70934923	70934923	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	70934923	T	A	70934923	3	1	234	1	0	0	0	0	1	0	0	0	7474	1609	56	5	6469	5	HYDIN	16	70934923	Missense_Mutation	SNP	T	TCGA-B4-5838-01A-11D-1669-08	40736129	70934923	19419830	63	15064											
HYDIN	54768	broad.mit.edu	37	16	70934968	70934968	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	70934968	C	T	70934968	3	4	234	1	0	0	0	0	1	0	0	0	7474	739	26	2	6514	2	HYDIN	16	70934968	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	45	70934968	19419785	64	15065											
QRICH2	84074	broad.mit.edu	37	17	74278089	74278089	+	Silent	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	74278089	G	A	74278089	2	1	234	1	0	0	0	0	0	0	0	1	12893	1048	37	1		1	QRICH2	17	74278089	Silent	SNP	G	TCGA-B4-5838-01A-11D-1669-08		74278089	6917121	65	15066											
UBE2O	63893	broad.mit.edu	37	17	74392603	74392603	+	Silent	SNP	G	G	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	74392603	G	A	74392603	2	1	234	1	0	0	0	0	0	0	0	1	16880	1136	40	1		1	UBE2O	17	74392603	Silent	SNP	G	TCGA-B4-5838-01A-11D-1669-08	114514	74392603	6802607	66	15067											
MC5R	4161	broad.mit.edu	37	18	13826628	13826628	+	Silent	SNP	C	C	T	rs142287236	byFrequency	TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	T	13826628	C	T	13826628	2	4	234	1	0	0	0	0	0	0	0	1	9374	639	23	1		1	MC5R	18	13826628	Silent	SNP	C	TCGA-B4-5838-01A-11D-1669-08		13826628	64250620	67	15068											
LAMA3	3909	broad.mit.edu	37	18	21470025	21470025	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	21470025	A	G	21470025	3	3	234	1	0	0	0	0	1	0	0	0	8614	130	5	3	5695	3	LAMA3	18	21470025	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	7643397	21470025	56607223	68	15069											
ZNRF4	148066	broad.mit.edu	37	19	5455579	5455579	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	5455579	A	G	5455579	3	3	234	1	0	0	0	0	1	0	0	0	18226	159	6	3	79	3	ZNRF4	19	5455579	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08		5455579	53673404	69	15070											
ZNF563	147837	broad.mit.edu	37	19	12429410	12429410	+	Nonstop_Mutation	SNP	A	A	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	12429410	A	C	12429410	4	2	234	1	0	0	0	0	0	0	0	0	18006	230	8	5	5	5	ZNF563	19	12429410	Nonstop_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	6973831	12429410	46699573	70	15071											
CLEC17A	388512	broad.mit.edu	37	19	14698466	14698467	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	TT	14698467	-	TT	14698466	7	5	234	1	0	1	1	0	0	0	0	0	3503	564	20	0	172	0	CLEC17A	19	14698466	Frame_Shift_Ins	INS	-	TCGA-B4-5838-01A-11D-1669-08	2269056	14698466	44430517	71	15072											
PRR12	57479	broad.mit.edu	37	19	50118194	50118194	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	-	50118194	A	-	50118194	7	5	234	1	0	1	0	1	0	0	0	0	12594	246	9	0	4982	0	PRR12	19	50118194	Frame_Shift_Del	DEL	A	TCGA-B4-5838-01A-11D-1669-08	35419728	50118194	9010789	72	15073											
HSPA12B	116835	broad.mit.edu	37	20	3728984	3728984	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	A	3728984	C	A	3728984	3	1	234	1	0	0	0	0	1	0	0	0	7412	623	22	4	822	4	HSPA12B	20	3728984	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08		3728984	59296536	73	15074											
SYNJ1	8867	broad.mit.edu	37	21	34012084	34012084	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	-	34012084	A	-	34012084	7	5	234	1	0	1	0	1	0	0	0	0	15464	242	9	0	1164	0	SYNJ1	21	34012084	Frame_Shift_Del	DEL	A	TCGA-B4-5838-01A-11D-1669-08		34012084	14117811	74	15075											
EFCAB6	64800	broad.mit.edu	37	22	43972202	43972202	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	43972202	T	G	43972202	3	3	234	1	0	0	0	0	1	0	0	0	4941	1580	55	5	1138	5	EFCAB6	22	43972202	Missense_Mutation	SNP	T	TCGA-B4-5838-01A-11D-1669-08		43972202	7332364	75	15076											
CELSR1	9620	broad.mit.edu	37	22	46806460	46806460	+	Splice_Site	SNP	T	T	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	46806460	T	G	46806460	5	3	234	1	0	0	0	0	0	0	1	0	3223	1594	55	5	4392	5	CELSR1	22	46806460	Splice_Site	SNP	T	TCGA-B4-5838-01A-11D-1669-08	2834258	46806460	4498106	76	15077											
ALG13	79868	broad.mit.edu	37	X	110996020	110996020	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	110996020	A	G	110996020	3	3	234	1	0	0	0	0	1	0	0	0	515	391	14	3	3175	3	ALG13	23	110996020	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08		110996020	44274540	77	15078											
F9	2158	broad.mit.edu	37	X	138644198	138644198	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	C	138644198	A	C	138644198	3	2	234	1	0	0	0	0	1	0	0	0	5355	130	5	5	1384	5	F9	23	138644198	Missense_Mutation	SNP	A	TCGA-B4-5838-01A-11D-1669-08	27648178	138644198	16626362	78	15079											
HCFC1	3054	broad.mit.edu	37	X	153223256	153223256	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5838-01A-11D-1669-08	TCGA-B4-5838-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	14e44673-c942-45f2-a588-cae1d3655bb8	72b65a50-86e6-47ba-84a9-83c4c33496be	G	153223256	C	G	153223256	3	3	234	1	0	0	0	0	1	0	0	0	6998	623	22	4	4057	4	HCFC1	23	153223256	Missense_Mutation	SNP	C	TCGA-B4-5838-01A-11D-1669-08	14579058	153223256	2047304	79	15080											
PTPRU	10076	broad.mit.edu	37	1	29647213	29647213	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	29647213	C	T	29647213	3	4	235	1	0	0	0	0	1	0	0	0	12826	768	27	1	3862	1	PTPRU	1	29647213	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08		29647213	219603408	1	15081											
BAI2	576	broad.mit.edu	37	1	32207698	32207698	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	-	32207698	C	-	32207698	7	5	235	1	0	1	0	1	0	0	0	0	1299	507	18	0	3488	0	BAI2	1	32207698	Frame_Shift_Del	DEL	C	TCGA-B4-5843-01A-11D-1669-08	2560485	32207698	217042923	2	15082											
SPOCD1	90853	broad.mit.edu	37	1	32279573	32279573	+	Silent	SNP	G	G	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	32279573	G	A	32279573	2	1	235	1	0	0	0	0	0	0	0	1	15090	1194	42	2		2	SPOCD1	1	32279573	Silent	SNP	G	TCGA-B4-5843-01A-11D-1669-08	71875	32279573	216971048	3	15083											
PTCH2	8643	broad.mit.edu	37	1	45297924	45297924	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	45297924	C	T	45297924	3	4	235	1	0	0	0	0	1	0	0	0	12741	768	27	1	3356	1	PTCH2	1	45297924	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08	13018351	45297924	203952697	4	15084											
TGFBR3	7049	broad.mit.edu	37	1	92193363	92193363	+	Splice_Site	SNP	A	A	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	92193363	A	G	92193363	5	3	235	1	0	0	0	0	0	0	1	0	15835	173	6	3	1861	3	TGFBR3	1	92193363	Splice_Site	SNP	A	TCGA-B4-5843-01A-11D-1669-08	46895439	92193363	157057258	5	15085											
RPAP2	79871	broad.mit.edu	37	1	92789348	92789348	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	92789348	C	T	92789348	3	4	235	1	0	0	0	0	1	0	0	0	13555	855	30	2	901	2	RPAP2	1	92789348	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08	595985	92789348	156461273	6	15086											
RUSC1	23623	broad.mit.edu	37	1	155291790	155291790	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	155291790	G	A	155291790	3	1	235	1	0	0	0	0	1	0	0	0	13763	1175	41	2	228	2	RUSC1	1	155291790	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08	62502442	155291790	93958831	7	15087											
OR10T2	128360	broad.mit.edu	37	1	158369112	158369112	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	158369112	C	A	158369112	3	1	235	1	0	0	0	0	1	0	0	0	10926	536	19	4	801	4	OR10T2	1	158369112	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08	3077322	158369112	90881509	8	15088											
VSIG8	391123	broad.mit.edu	37	1	159827673	159827673	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	159827673	C	G	159827673	3	3	235	1	0	0	0	0	1	0	0	0	17238	623	22	4	746	4	VSIG8	1	159827673	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08	1458561	159827673	89422948	9	15089											
SCYL3	57147	broad.mit.edu	37	1	169857876	169857876	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	169857876	A	G	169857876	3	3	235	1	0	0	0	0	1	0	0	0	13962	101	4	3	2174	3	SCYL3	1	169857876	Missense_Mutation	SNP	A	TCGA-B4-5843-01A-11D-1669-08	10030203	169857876	79392745	10	15090											
TBCE	6905	broad.mit.edu	37	1	235599139	235599139	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	C	235599139	A	C	235599139	3	2	235	1	0	0	0	0	1	0	0	0	15646	333	12	5	847	5	TBCE	1	235599139	Missense_Mutation	SNP	A	TCGA-B4-5843-01A-11D-1669-08	65741263	235599139	13651482	11	15091											
FMN2	56776	broad.mit.edu	37	1	240371134	240371134	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	240371134	A	G	240371134	3	3	235	1	0	0	0	0	1	0	0	0	5957	217	8	3	3040	3	FMN2	1	240371134	Missense_Mutation	SNP	A	TCGA-B4-5843-01A-11D-1669-08	4771995	240371134	8879487	12	15092											
RAD51AP2	729475	broad.mit.edu	37	2	17698606	17698606	+	Silent	SNP	A	A	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	17698606	A	G	17698606	2	3	235	1	0	0	0	0	0	0	0	1	13000	214	8	3		3	RAD51AP2	2	17698606	Silent	SNP	A	TCGA-B4-5843-01A-11D-1669-08		17698606	225500767	13	15093											
HS6ST1	9394	broad.mit.edu	37	2	129026219	129026220	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	129026220	-	A	129026219	7	5	235	1	0	1	1	0	0	0	0	0	7377	697	25	0	486	0	HS6ST1	2	129026219	Frame_Shift_Ins	INS	-	TCGA-B4-5843-01A-11D-1669-08	111327613	129026219	114173154	14	15094											
DNAJC10	54431	broad.mit.edu	37	2	183593374	183593374	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	183593374	T	A	183593374	3	1	235	1	0	0	0	0	1	0	0	0	4631	1838	64	5	504	5	DNAJC10	2	183593374	Missense_Mutation	SNP	T	TCGA-B4-5843-01A-11D-1669-08	54567155	183593374	59605999	15	15095											
VHL	7428	broad.mit.edu	37	3	10183860	10183860	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	C	10183860	A	C	10183860	3	2	235	1	0	0	0	0	1	0	0	0	17174	159	6	5	331	5	VHL	3	10183860	Missense_Mutation	SNP	A	TCGA-B4-5843-01A-11D-1669-08		10183860	187838570	16	15096											
STAG1	10274	broad.mit.edu	37	3	136062680	136062683	+	Frame_Shift_Del	DEL	AAAA	AAAA	-			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	-	136062683	AAAA	-	136062680	7	5	235	1	0	1	0	1	0	0	0	0	15254	372	13	0	356	0	STAG1	3	136062680	Frame_Shift_Del	DEL	AAAA	TCGA-B4-5843-01A-11D-1669-08	125878820	136062680	61959750	17	15097											
UGT2B28	54490	broad.mit.edu	37	4	70148312	70148312	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	70148312	C	T	70148312	3	4	235	1	0	0	0	0	1	0	0	0	16972	826	29	2	808	2	UGT2B28	4	70148312	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08		70148312	121005964	18	15098											
C5orf34	375444	broad.mit.edu	37	5	43506009	43506009	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	43506009	G	A	43506009	3	1	235	1	0	0	0	0	1	0	0	0	2295	1319	46	2	1183	2	C5orf34	5	43506009	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08		43506009	137409251	19	15099											
DMXL1	1657	broad.mit.edu	37	5	118569034	118569034	+	Splice_Site	SNP	G	G	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	118569034	G	T	118569034	5	4	235	1	0	0	0	0	0	0	1	0	4596	956	33	4	8425	4	DMXL1	5	118569034	Splice_Site	SNP	G	TCGA-B4-5843-01A-11D-1669-08	75063025	118569034	62346226	20	15100											
ELN	2006	broad.mit.edu	37	7	73466124	73466132	+	In_Frame_Del	DEL	GTTCCTGGC	GTTCCTGGC	-			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	-	73466132	GTTCCTGGC	-	73466124	7	5	235	1	0	1	0	1	0	0	0	0	5073	1377	48	0	921	0	ELN	7	73466124	In_Frame_Del	DEL	GTTCCTGGC	TCGA-B4-5843-01A-11D-1669-08		73466124	85672539	21	15101											
AKAP9	10142	broad.mit.edu	37	7	91631292	91631292	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	91631292	T	A	91631292	3	1	235	1	0	0	0	0	1	0	0	0	459	1490	52	5	2091	5	AKAP9	7	91631292	Missense_Mutation	SNP	T	TCGA-B4-5843-01A-11D-1669-08	18165168	91631292	67507371	22	15102											
LMTK2	22853	broad.mit.edu	37	7	97823182	97823182	+	Silent	SNP	C	C	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	97823182	C	G	97823182	2	3	235	1	0	0	0	0	0	0	0	1	8866	610	22	4		4	LMTK2	7	97823182	Silent	SNP	C	TCGA-B4-5843-01A-11D-1669-08	6191890	97823182	61315481	23	15103											
RBM28	55131	broad.mit.edu	37	7	127978320	127978320	+	Missense_Mutation	SNP	G	G	T	rs148752295	by1000genomes	TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	127978320	G	T	127978320	3	4	235	1	0	0	0	0	1	0	0	0	13141	1368	48	4	1814	4	RBM28	7	127978320	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08	30155138	127978320	31160343	24	15104											
HNRNPK	3190	broad.mit.edu	37	9	86587818	86587818	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	86587818	C	T	86587818	3	4	235	1	0	0	0	0	1	0	0	0	7276	603	21	2	875	2	HNRNPK	9	86587818	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08		86587818	54625613	25	15105											
MURC	347273	broad.mit.edu	37	9	103348134	103348134	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	C	103348134	G	C	103348134	3	2	235	1	0	0	0	0	1	0	0	0	9994	1290	45	4	502	4	MURC	9	103348134	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08	16760316	103348134	37865297	26	15106											
TNC	3371	broad.mit.edu	37	9	117803269	117803269	+	Silent	SNP	G	G	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	117803269	G	A	117803269	2	1	235	1	0	0	0	0	0	0	0	1	16282	1335	47	2		2	TNC	9	117803269	Silent	SNP	G	TCGA-B4-5843-01A-11D-1669-08	14455135	117803269	23410162	27	15107											
ADAMTSL2	9719	broad.mit.edu	37	9	136409649	136409649	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	C	136409649	G	C	136409649	3	2	235	1	0	0	0	0	1	0	0	0	275	1000	35	4	766	4	ADAMTSL2	9	136409649	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08	18606380	136409649	4803782	28	15108											
ITIH2	3698	broad.mit.edu	37	10	7762870	7762870	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	7762870	G	A	7762870	3	1	235	1	0	0	0	0	1	0	0	0	7911	1058	37	1	708	1	ITIH2	10	7762870	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08		7762870	127771877	29	15109											
ZNF485	220992	broad.mit.edu	37	10	44112775	44112775	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	44112775	T	G	44112775	3	3	235	1	0	0	0	0	1	0	0	0	17950	1403	49	5	1298	5	ZNF485	10	44112775	Missense_Mutation	SNP	T	TCGA-B4-5843-01A-11D-1669-08	36349905	44112775	91421972	30	15110											
NUMA1	4926	broad.mit.edu	37	11	71724426	71724426	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	71724426	C	T	71724426	3	4	235	1	0	0	0	0	1	0	0	0	10757	739	26	2	2276	2	NUMA1	11	71724426	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08		71724426	63282090	31	15111											
CCDC81	60494	broad.mit.edu	37	11	86125851	86125851	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	86125851	A	T	86125851	3	4	235	1	0	0	0	0	1	0	0	0	2857	14	1	5	1458	5	CCDC81	11	86125851	Missense_Mutation	SNP	A	TCGA-B4-5843-01A-11D-1669-08	14401425	86125851	48880665	32	15112											
CNTN5	53942	broad.mit.edu	37	11	99932125	99932125	+	Splice_Site	SNP	A	A	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	99932125	A	T	99932125	5	4	235	1	0	0	0	0	0	0	1	0	3646	202	7	5	1192	5	CNTN5	11	99932125	Splice_Site	SNP	A	TCGA-B4-5843-01A-11D-1669-08	13806274	99932125	35074391	33	15113											
TROAP	10024	broad.mit.edu	37	12	49722758	49722758	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	-	49722758	C	-	49722758	7	5	235	1	0	1	0	1	0	0	0	0	16587	739	26	0	1072	0	TROAP	12	49722758	Frame_Shift_Del	DEL	C	TCGA-B4-5843-01A-11D-1669-08		49722758	84129137	34	15114											
IKBIP	121457	broad.mit.edu	37	12	99019997	99019997	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	99019997	G	A	99019997	3	1	235	1	0	0	0	0	1	0	0	0	7616	942	33	2	1052	2	IKBIP	12	99019997	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08	49297239	99019997	34831898	35	15115											
EXOSC8	11340	broad.mit.edu	37	13	37580102	37580102	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	37580102	C	G	37580102	3	3	235	1	0	0	0	0	1	0	0	0	5322	913	32	4	306	4	EXOSC8	13	37580102	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08		37580102	77589776	36	15116											
ZIC5	85416	broad.mit.edu	37	13	100617841	100617841	+	Silent	SNP	T	T	C			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	C	100617841	T	C	100617841	2	2	235	1	0	0	0	0	0	0	0	1	17694	1567	55	3		3	ZIC5	13	100617841	Silent	SNP	T	TCGA-B4-5843-01A-11D-1669-08	63037739	100617841	14552037	37	15117											
ADCY4	196883	broad.mit.edu	37	14	24793333	24793333	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	24793333	C	T	24793333	3	4	235	1	0	0	0	0	1	0	0	0	296	690	24	2	1292	2	ADCY4	14	24793333	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08		24793333	82556207	38	15118											
SNW1	22938	broad.mit.edu	37	14	78221407	78221407	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	78221407	G	T	78221407	3	4	235	1	0	0	0	0	1	0	0	0	14892	1319	46	4	1591	4	SNW1	14	78221407	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08	53428074	78221407	29128133	39	15119											
AHNAK2	113146	broad.mit.edu	37	14	105415282	105415282	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	105415282	C	T	105415282	3	4	235	1	0	0	0	0	1	0	0	0	415	739	26	2	10885	2	AHNAK2	14	105415282	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08	27193875	105415282	1934258	40	15120											
CLK3	1198	broad.mit.edu	37	15	74922183	74922183	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	74922183	G	A	74922183	3	1	235	1	0	0	0	0	1	0	0	0	3540	1291	45	2	1926	2	CLK3	15	74922183	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08		74922183	27609209	41	15121											
ADAMTS7	11173	broad.mit.edu	37	15	79089102	79089102	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	79089102	C	G	79089102	3	3	235	1	0	0	0	0	1	0	0	0	271	864	30	4	4495	4	ADAMTS7	15	79089102	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08	4166919	79089102	23442290	42	15122											
ARHGDIG	398	broad.mit.edu	37	16	332800	332800	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	332800	G	T	332800	3	4	235	1	0	0	0	0	1	0	0	0	892	1174	41	4	686	4	ARHGDIG	16	332800	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08		332800	90021953	43	15123											
NCOR1	9611	broad.mit.edu	37	17	16075196	16075196	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	16075196	A	T	16075196	3	4	235	1	0	0	0	0	1	0	0	0	10242	14	1	5	7138	5	NCOR1	17	16075196	Missense_Mutation	SNP	A	TCGA-B4-5843-01A-11D-1669-08		16075196	65120014	44	15124											
KIAA0100	9703	broad.mit.edu	37	17	26966605	26966605	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	26966605	C	G	26966605	3	3	235	1	0	0	0	0	1	0	0	0	8161	680	24	4	5756	4	KIAA0100	17	26966605	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08	10891409	26966605	54228605	45	15125											
STAT5B	6777	broad.mit.edu	37	17	40362270	40362270	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	C	40362270	T	C	40362270	3	2	235	1	0	0	0	0	1	0	0	0	15281	1754	61	3	558	3	STAT5B	17	40362270	Missense_Mutation	SNP	T	TCGA-B4-5843-01A-11D-1669-08	13395665	40362270	40832940	46	15126											
MRPS7	51081	broad.mit.edu	37	17	73258479	73258479	+	Silent	SNP	C	C	T	rs6501772	by1000genomes	TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	73258479	C	T	73258479	2	4	235	1	0	0	0	0	0	0	0	1	9855	638	22	2		2	MRPS7	17	73258479	Silent	SNP	C	TCGA-B4-5843-01A-11D-1669-08	32896209	73258479	7936731	47	15127											
TXNDC2	84203	broad.mit.edu	37	18	9887808	9887808	+	Silent	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	9887808	C	T	9887808	2	4	235	1	0	0	0	0	0	0	0	1	16809	854	30	2		2	TXNDC2	18	9887808	Silent	SNP	C	TCGA-B4-5843-01A-11D-1669-08		9887808	68189440	48	15128											
TBXA2R	6915	broad.mit.edu	37	19	3600521	3600521	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	3600521	C	T	3600521	3	4	235	1	0	0	0	0	1	0	0	0	15675	623	22	2	1172	2	TBXA2R	19	3600521	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08		3600521	55528462	49	15129											
CHERP	10523	broad.mit.edu	37	19	16636145	16636145	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	16636145	C	T	16636145	3	4	235	1	0	0	0	0	1	0	0	0	3338	768	27	1	1133	1	CHERP	19	16636145	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08	13035624	16636145	42492838	50	15130											
ACTN4	81	broad.mit.edu	37	19	39214837	39214837	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	T	39214837	C	T	39214837	3	4	235	1	0	0	0	0	1	0	0	0	207	652	23	1	1791	1	ACTN4	19	39214837	Missense_Mutation	SNP	C	TCGA-B4-5843-01A-11D-1669-08	22578692	39214837	19914146	51	15131											
CLC	1178	broad.mit.edu	37	19	40225079	40225079	+	Silent	SNP	G	G	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	40225079	G	A	40225079	2	1	235	1	0	0	0	0	0	0	0	1	3458	1368	48	2		2	CLC	19	40225079	Silent	SNP	G	TCGA-B4-5843-01A-11D-1669-08	1010242	40225079	18903904	52	15132											
MED25	81857	broad.mit.edu	37	19	50335647	50335647	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	C	50335647	T	C	50335647	3	2	235	1	0	0	0	0	1	0	0	0	9450	1551	54	3	1507	3	MED25	19	50335647	Missense_Mutation	SNP	T	TCGA-B4-5843-01A-11D-1669-08	10110568	50335647	8793336	53	15133											
EIF6	3692	broad.mit.edu	37	20	33867388	33867388	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	A	33867388	G	A	33867388	3	1	235	1	0	0	0	0	1	0	0	0	5047	1086	38	1	36	1	EIF6	20	33867388	Missense_Mutation	SNP	G	TCGA-B4-5843-01A-11D-1669-08		33867388	29158132	54	15134											
SBF1	6305	broad.mit.edu	37	22	50904460	50904460	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5843-01A-11D-1669-08	TCGA-B4-5843-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	97dd656c-4d46-4d9b-979a-bfa8694ed4d3	f601fb78-315b-4f3d-bb09-364b57df0be2	G	50904460	A	G	50904460	3	3	235	1	0	0	0	0	1	0	0	0	13871	101	4	3	4872	3	SBF1	22	50904460	Missense_Mutation	SNP	A	TCGA-B4-5843-01A-11D-1669-08		50904460	400106	55	15135											
MTOR	2475	broad.mit.edu	37	1	11188164	11188164	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	11188164	G	C	11188164	3	2	236	1	0	0	0	0	1	0	0	0	9961	1377	48	4	1783	4	MTOR	1	11188164	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08		11188164	238062457	1	15136											
TTC39A	22996	broad.mit.edu	37	1	51755792	51755792	+	Splice_Site	SNP	C	C	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	51755792	C	A	51755792	5	1	236	1	0	0	0	0	0	0	1	0	16719	927	32	4	367	4	TTC39A	1	51755792	Splice_Site	SNP	C	TCGA-B4-5844-01A-11D-1669-08	40567628	51755792	197494829	2	15137											
ZCCHC11	23318	broad.mit.edu	37	1	52912272	52912272	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	52912272	G	-	52912272	7	5	236	1	0	1	0	1	0	0	0	0	17592	1377	48	0	1474	0	ZCCHC11	1	52912272	Frame_Shift_Del	DEL	G	TCGA-B4-5844-01A-11D-1669-08	1156480	52912272	196338349	3	15138											
ZNHIT6	54680	broad.mit.edu	37	1	86146557	86146557	+	Silent	SNP	G	G	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	86146557	G	C	86146557	2	2	236	1	0	0	0	0	0	0	0	1	18221	1161	41	4		4	ZNHIT6	1	86146557	Silent	SNP	G	TCGA-B4-5844-01A-11D-1669-08	33234285	86146557	163104064	4	15139											
DPYD	1806	broad.mit.edu	37	1	98348868	98348868	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	98348868	C	G	98348868	3	3	236	1	0	0	0	0	1	0	0	0	4747	912	32	4	3106	4	DPYD	1	98348868	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	12202311	98348868	150901753	5	15140											
SV2A	9900	broad.mit.edu	37	1	149877444	149877444	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	149877444	G	A	149877444	3	1	236	1	0	0	0	0	1	0	0	0	15429	1232	43	2	203	2	SV2A	1	149877444	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	51528576	149877444	99373177	6	15141											
RAB4A	5867	broad.mit.edu	37	1	229434801	229434801	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	229434801	C	G	229434801	3	3	236	1	0	0	0	0	1	0	0	0	12959	565	20	4	545	4	RAB4A	1	229434801	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	79557357	229434801	19815820	7	15142											
CEBPZ	10153	broad.mit.edu	37	2	37450342	37450342	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	37450342	C	T	37450342	3	4	236	1	0	0	0	0	1	0	0	0	3206	681	24	2	1368	2	CEBPZ	2	37450342	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08		37450342	205749031	8	15143											
LRP2	4036	broad.mit.edu	37	2	169993944	169993944	+	Nonsense_Mutation	SNP	G	G	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	169993944	G	C	169993944	4	2	236	1	0	0	0	0	0	1	0	0	8963	1024	36	4	405	4	LRP2	2	169993944	Nonsense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	132543602	169993944	73205429	9	15144											
PBRM1	55193	broad.mit.edu	37	3	52692214	52692214	+	Splice_Site	DEL	C	C	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	52692214	C	-	52692214	8	5	236	1	0	1	0	1	0	0	1	0	11498	521	18	0	4358	0	PBRM1	3	52692214	Splice_Site	DEL	C	TCGA-B4-5844-01A-11D-1669-08		52692214	145330216	10	15145											
KIAA1257	57501	broad.mit.edu	37	3	128694691	128694691	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	128694691	T	A	128694691	3	1	236	1	0	0	0	0	1	0	0	0	8225	1435	50	5	285	5	KIAA1257	3	128694691	Missense_Mutation	SNP	T	TCGA-B4-5844-01A-11D-1669-08	76002477	128694691	69327739	11	15146											
GPR149	344758	broad.mit.edu	37	3	154147212	154147212	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	154147212	T	C	154147212	3	2	236	1	0	0	0	0	1	0	0	0	6661	1725	60	3	2018	3	GPR149	3	154147212	Missense_Mutation	SNP	T	TCGA-B4-5844-01A-11D-1669-08	25452521	154147212	43875218	12	15147											
PDCD10	11235	broad.mit.edu	37	3	167414854	167414854	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	167414854	T	-	167414854	7	5	236	1	0	1	0	1	0	0	0	0	11623	1609	56	0	447	0	PDCD10	3	167414854	Frame_Shift_Del	DEL	T	TCGA-B4-5844-01A-11D-1669-08	13267642	167414854	30607576	13	15148											
SLC34A2	10568	broad.mit.edu	37	4	25664146	25664146	+	Silent	SNP	A	A	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	25664146	A	G	25664146	2	3	236	1	0	0	0	0	0	0	0	1	14581	291	11	3		3	SLC34A2	4	25664146	Silent	SNP	A	TCGA-B4-5844-01A-11D-1669-08		25664146	165490130	14	15149											
INTS12	57117	broad.mit.edu	37	4	106603970	106603970	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	106603970	A	C	106603970	3	2	236	1	0	0	0	0	1	0	0	0	7784	246	9	5	83	5	INTS12	4	106603970	Missense_Mutation	SNP	A	TCGA-B4-5844-01A-11D-1669-08	80939824	106603970	84550306	15	15150											
SEC24B	10427	broad.mit.edu	37	4	110452560	110452560	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	110452560	C	A	110452560	3	1	236	1	0	0	0	0	1	0	0	0	14008	478	17	4	3350	4	SEC24B	4	110452560	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	3848590	110452560	80701716	16	15151											
PITX2	5308	broad.mit.edu	37	4	111539370	111539370	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	111539370	T	C	111539370	3	2	236	1	0	0	0	0	1	0	0	0	11962	1850	64	3	92	3	PITX2	4	111539370	Missense_Mutation	SNP	T	TCGA-B4-5844-01A-11D-1669-08	1086810	111539370	79614906	17	15152											
PRSS12	8492	broad.mit.edu	37	4	119273399	119273399	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	119273399	G	C	119273399	3	2	236	1	0	0	0	0	1	0	0	0	12625	1020	36	4	2202	4	PRSS12	4	119273399	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	7734029	119273399	71880877	18	15153											
KIAA1109	84162	broad.mit.edu	37	4	123270439	123270439	+	Silent	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	123270439	G	A	123270439	2	1	236	1	0	0	0	0	0	0	0	1	8215	1161	41	2		2	KIAA1109	4	123270439	Silent	SNP	G	TCGA-B4-5844-01A-11D-1669-08	3997040	123270439	67883837	19	15154											
PCDHGA2	56113	broad.mit.edu	37	5	140720917	140720917	+	Silent	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	140720917	G	A	140720917	2	1	236	1	0	0	0	0	0	0	0	1	11561	1074	38	1		1	PCDHGA2	5	140720917	Silent	SNP	G	TCGA-B4-5844-01A-11D-1669-08		140720917	40194343	20	15155											
ZNF354B	117608	broad.mit.edu	37	5	178310052	178310052	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	178310052	A	C	178310052	3	2	236	1	0	0	0	0	1	0	0	0	17877	101	4	5	613	5	ZNF354B	5	178310052	Missense_Mutation	SNP	A	TCGA-B4-5844-01A-11D-1669-08	37589135	178310052	2605208	21	15156											
PGK2	5232	broad.mit.edu	37	6	49754598	49754598	+	Silent	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	49754598	G	A	49754598	2	1	236	1	0	0	0	0	0	0	0	1	11798	1074	38	1		1	PGK2	6	49754598	Silent	SNP	G	TCGA-B4-5844-01A-11D-1669-08		49754598	121360469	22	15157											
TFAP2D	83741	broad.mit.edu	37	6	50683027	50683027	+	Missense_Mutation	SNP	C	C	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	50683027	C	G	50683027	3	3	236	1	0	0	0	0	1	0	0	0	15802	710	25	4	244	4	TFAP2D	6	50683027	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	928429	50683027	120432040	23	15158											
RIMS1	22999	broad.mit.edu	37	6	72960628	72960628	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	72960628	A	-	72960628	7	5	236	1	0	1	0	1	0	0	0	0	13380	363	13	0	2594	0	RIMS1	6	72960628	Frame_Shift_Del	DEL	A	TCGA-B4-5844-01A-11D-1669-08	22277601	72960628	98154439	24	15159											
QRSL1	55278	broad.mit.edu	37	6	107102774	107102774	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	107102774	C	T	107102774	3	4	236	1	0	0	0	0	1	0	0	0	12894	710	25	2	1049	2	QRSL1	6	107102774	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	34142146	107102774	64012293	25	15160											
ZC3H12D	340152	broad.mit.edu	37	6	149773757	149773757	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	149773757	G	T	149773757	3	4	236	1	0	0	0	0	1	0	0	0	17576	1000	35	4	809	4	ZC3H12D	6	149773757	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	42670983	149773757	21341310	26	15161											
LRCH4	4034	broad.mit.edu	37	7	100175156	100175156	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	100175156	G	A	100175156	3	1	236	1	0	0	0	0	1	0	0	0	8942	1000	35	2	945	2	LRCH4	7	100175156	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08		100175156	58963507	27	15162											
TRIM24	8805	broad.mit.edu	37	7	138268636	138268636	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	138268636	G	C	138268636	3	2	236	1	0	0	0	0	1	0	0	0	16510	1368	48	4	2905	4	TRIM24	7	138268636	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	38093480	138268636	20870027	28	15163											
XPO7	23039	broad.mit.edu	37	8	21839275	21839275	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	21839275	T	C	21839275	3	2	236	1	0	0	0	0	1	0	0	0	17461	1812	63	3	1081	3	XPO7	8	21839275	Missense_Mutation	SNP	T	TCGA-B4-5844-01A-11D-1669-08		21839275	124524747	29	15164											
ZNF395	55893	broad.mit.edu	37	8	28210125	28210126	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	28210126	CA	-	28210125	7	5	236	1	0	1	0	1	0	0	0	0	17893	581	21	0	676	0	ZNF395	8	28210125	Frame_Shift_Del	DEL	CA	TCGA-B4-5844-01A-11D-1669-08	6370850	28210125	118153897	30	15165											
LY6E	4061	broad.mit.edu	37	8	144102375	144102375	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	144102375	G	T	144102375	3	4	236	1	0	0	0	0	1	0	0	0	9098	1029	36	4	21	4	LY6E	8	144102375	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	115892250	144102375	2261647	31	15166											
LRRC19	64922	broad.mit.edu	37	9	26997769	26997769	+	Silent	SNP	T	T	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	26997769	T	G	26997769	2	3	236	1	0	0	0	0	0	0	0	1	8982	1393	49	5		5	LRRC19	9	26997769	Silent	SNP	T	TCGA-B4-5844-01A-11D-1669-08		26997769	114215662	32	15167											
CNTNAP3	79937	broad.mit.edu	37	9	39109190	39109190	+	Missense_Mutation	SNP	A	A	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	39109190	A	T	39109190	3	4	236	1	0	0	0	0	1	0	0	0	3650	362	13	5	1574	5	CNTNAP3	9	39109190	Missense_Mutation	SNP	A	TCGA-B4-5844-01A-11D-1669-08	12111421	39109190	102104241	33	15168											
CNTNAP3	79937	broad.mit.edu	37	9	39176052	39176052	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	39176052	C	A	39176052	3	1	236	1	0	0	0	0	1	0	0	0	3650	652	23	4	2973	4	CNTNAP3	9	39176052	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	66862	39176052	102037379	34	15169											
PPP3R2	5535	broad.mit.edu	37	9	104357086	104357086	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	104357086	C	T	104357086	3	4	236	1	0	0	0	0	1	0	0	0	12411	536	19	1	398	1	PPP3R2	9	104357086	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	65181034	104357086	36856345	35	15170											
OR1L1	26737	broad.mit.edu	37	9	125423916	125423919	+	Frame_Shift_Del	DEL	GAGA	GAGA	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	125423919	GAGA	-	125423916	7	5	236	1	0	1	0	1	0	0	0	0	10970	1189	41	0		0	OR1L1	9	125423916	Frame_Shift_Del	DEL	GAGA	TCGA-B4-5844-01A-11D-1669-08	21066830	125423916	15789515	36	15171											
LRRTM3	347731	broad.mit.edu	37	10	68687088	68687088	+	Missense_Mutation	SNP	G	G	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	68687088	G	C	68687088	3	2	236	1	0	0	0	0	1	0	0	0	9048	1339	47	4	420	4	LRRTM3	10	68687088	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08		68687088	66847659	37	15172											
TET1	80312	broad.mit.edu	37	10	70450720	70450720	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	70450720	A	G	70450720	3	3	236	1	0	0	0	0	1	0	0	0	15781	275	10	3	5602	3	TET1	10	70450720	Missense_Mutation	SNP	A	TCGA-B4-5844-01A-11D-1669-08	1763632	70450720	65084027	38	15173											
TRIM6	117854	broad.mit.edu	37	11	5632212	5632216	+	Frame_Shift_Del	DEL	GGGGG	GGGGG	-	rs10769124	byFrequency	TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	5632216	GGGGG	-	5632212	7	5	236	1	0	1	0	1	0	0	0	0	16545	1335	47	0	1221	0	TRIM6	11	5632212	Frame_Shift_Del	DEL	GGGGG	TCGA-B4-5844-01A-11D-1669-08		5632212	129374304	39	15174											
CSTF3	1479	broad.mit.edu	37	11	33107506	33107506	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	33107506	C	-	33107506	7	5	236	1	0	1	0	1	0	0	0	0	3988	565	20	0	340	0	CSTF3	11	33107506	Frame_Shift_Del	DEL	C	TCGA-B4-5844-01A-11D-1669-08	27475294	33107506	101899010	40	15175											
SCGB2A1	4246	broad.mit.edu	37	11	61977950	61977950	+	Nonsense_Mutation	SNP	G	G	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	61977950	G	T	61977950	4	4	236	1	0	0	0	0	0	1	0	0	13912	1291	45	4	127	4	SCGB2A1	11	61977950	Nonsense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	28870444	61977950	73028566	41	15176											
C11orf84	144097	broad.mit.edu	37	11	63585351	63585351	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	63585351	A	G	63585351	3	3	236	1	0	0	0	0	1	0	0	0	1669	247	9	3	208	3	C11orf84	11	63585351	Missense_Mutation	SNP	A	TCGA-B4-5844-01A-11D-1669-08	1607401	63585351	71421165	42	15177											
FAM168A	23201	broad.mit.edu	37	11	73120706	73120706	+	Splice_Site	SNP	C	C	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	73120706	C	A	73120706	5	1	236	1	0	0	0	0	0	0	1	0	5489	637	22	4	294	4	FAM168A	11	73120706	Splice_Site	SNP	C	TCGA-B4-5844-01A-11D-1669-08	9535355	73120706	61885810	43	15178											
SIAE	54414	broad.mit.edu	37	11	124543579	124543579	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	124543579	C	T	124543579	3	4	236	1	0	0	0	0	1	0	0	0	14311	623	22	2	1585	2	SIAE	11	124543579	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	51422873	124543579	10462937	44	15179											
GNPTAB	79158	broad.mit.edu	37	12	102159997	102159997	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	102159997	A	C	102159997	3	2	236	1	0	0	0	0	1	0	0	0	6552	14	1	5	2326	5	GNPTAB	12	102159997	Missense_Mutation	SNP	A	TCGA-B4-5844-01A-11D-1669-08		102159997	31691898	45	15180											
UBE3B	89910	broad.mit.edu	37	12	109939265	109939265	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	109939265	G	A	109939265	3	1	236	1	0	0	0	0	1	0	0	0	16892	971	34	2	1250	2	UBE3B	12	109939265	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	7779268	109939265	23912630	46	15181											
NAA25	80018	broad.mit.edu	37	12	112509842	112509842	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	112509842	G	A	112509842	3	1	236	1	0	0	0	0	1	0	0	0	10128	942	33	2	2085	2	NAA25	12	112509842	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	2570577	112509842	21342053	47	15182											
OR4K14	122740	broad.mit.edu	37	14	20483333	20483333	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	20483333	G	T	20483333	3	4	236	1	0	0	0	0	1	0	0	0	11076	1174	41	4	915	4	OR4K14	14	20483333	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08		20483333	86866207	48	15183											
AHNAK2	113146	broad.mit.edu	37	14	105413493	105413493	+	Silent	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	105413493	C	T	105413493	2	4	236	1	0	0	0	0	0	0	0	1	415	639	23	1		1	AHNAK2	14	105413493	Silent	SNP	C	TCGA-B4-5844-01A-11D-1669-08	84930160	105413493	1936047	49	15184											
MAPKBP1	23005	broad.mit.edu	37	15	42113793	42113793	+	Silent	SNP	C	C	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	42113793	C	A	42113793	2	1	236	1	0	0	0	0	0	0	0	1	9299	610	22	4		4	MAPKBP1	15	42113793	Silent	SNP	C	TCGA-B4-5844-01A-11D-1669-08		42113793	60417599	50	15185											
TGM7	116179	broad.mit.edu	37	15	43572078	43572078	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	43572078	G	A	43572078	3	1	236	1	0	0	0	0	1	0	0	0	15847	1203	42	2	725	2	TGM7	15	43572078	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	1458285	43572078	58959314	51	15186											
PAQR5	54852	broad.mit.edu	37	15	69689888	69689888	+	Silent	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	69689888	C	T	69689888	2	4	236	1	0	0	0	0	0	0	0	1	11445	842	30	2		2	PAQR5	15	69689888	Silent	SNP	C	TCGA-B4-5844-01A-11D-1669-08	26117810	69689888	32841504	52	15187											
LARP6	55323	broad.mit.edu	37	15	71124409	71124409	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	71124409	C	A	71124409	3	1	236	1	0	0	0	0	1	0	0	0	8639	854	30	4	21	4	LARP6	15	71124409	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	1434521	71124409	31406983	53	15188											
MORF4L1	10933	broad.mit.edu	37	15	79187218	79187218	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	79187218	T	G	79187218	3	3	236	1	0	0	0	0	1	0	0	0	9713	1490	52	5	1022	5	MORF4L1	15	79187218	Missense_Mutation	SNP	T	TCGA-B4-5844-01A-11D-1669-08	8062809	79187218	23344174	54	15189											
PCSK6	5046	broad.mit.edu	37	15	101983760	101983760	+	Splice_Site	SNP	C	C	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	101983760	C	A	101983760	5	1	236	1	0	0	0	0	0	0	1	0	11611	521	18	4	3069	4	PCSK6	15	101983760	Splice_Site	SNP	C	TCGA-B4-5844-01A-11D-1669-08	22796542	101983760	547632	55	15190											
TNRC6A	27327	broad.mit.edu	37	16	24802866	24802866	+	Missense_Mutation	SNP	C	C	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	24802866	C	A	24802866	3	1	236	1	0	0	0	0	1	0	0	0	16352	478	17	4	2925	4	TNRC6A	16	24802866	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08		24802866	65551887	56	15191											
NUP93	9688	broad.mit.edu	37	16	56852646	56852646	+	Missense_Mutation	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	56852646	G	A	56852646	3	1	236	1	0	0	0	0	1	0	0	0	10779	1116	39	1	578	1	NUP93	16	56852646	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	32049780	56852646	33502107	57	15192											
HYDIN	54768	broad.mit.edu	37	16	71212850	71212850	+	Missense_Mutation	SNP	A	A	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	71212850	A	G	71212850	3	3	236	1	0	0	0	0	1	0	0	0	7474	101	4	3	15344	3	HYDIN	16	71212850	Missense_Mutation	SNP	A	TCGA-B4-5844-01A-11D-1669-08	14360204	71212850	19141903	58	15193											
DNAH9	1770	broad.mit.edu	37	17	11809061	11809061	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	11809061	C	T	11809061	3	4	236	1	0	0	0	0	1	0	0	0	4610	594	21	2	11926	2	DNAH9	17	11809061	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08		11809061	69386149	59	15194											
G6PC	2538	broad.mit.edu	37	17	41063346	41063346	+	Frame_Shift_Del	DEL	C	C	-	rs80356486		TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	41063346	C	-	41063346	7	5	236	1	0	1	0	1	0	0	0	0	6150	855	30	0	995	0	G6PC	17	41063346	Frame_Shift_Del	DEL	C	TCGA-B4-5844-01A-11D-1669-08	29254285	41063346	40131864	60	15195											
NBR1	4077	broad.mit.edu	37	17	41341765	41341766	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	41341766	AT	-	41341765	7	5	236	1	0	1	0	1	0	0	0	0	10207	217	8	0	667	0	NBR1	17	41341765	Frame_Shift_Del	DEL	AT	TCGA-B4-5844-01A-11D-1669-08	278419	41341765	39853445	61	15196											
CRHR1	1394	broad.mit.edu	37	17	43898756	43898756	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	43898756	T	G	43898756	3	3	236	1	0	0	0	0	1	0	0	0	3873	1580	55	5	291	5	CRHR1	17	43898756	Missense_Mutation	SNP	T	TCGA-B4-5844-01A-11D-1669-08	2556991	43898756	37296454	62	15197											
TTLL6	284076	broad.mit.edu	37	17	46865173	46865173	+	Splice_Site	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	46865173	C	T	46865173	5	4	236	1	0	0	0	0	0	0	1	0	16743	666	23	1	1106	1	TTLL6	17	46865173	Splice_Site	SNP	C	TCGA-B4-5844-01A-11D-1669-08	2966417	46865173	34330037	63	15198											
ANKFN1	162282	broad.mit.edu	37	17	54535324	54535325	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	AA	54535325	-	AA	54535324	7	5	236	1	0	1	1	0	0	0	0	0	625	710	25	0	1600	0	ANKFN1	17	54535324	Frame_Shift_Ins	INS	-	TCGA-B4-5844-01A-11D-1669-08	7670151	54535324	26659886	64	15199											
CD300A	11314	broad.mit.edu	37	17	72469738	72469738	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	72469738	A	C	72469738	3	2	236	1	0	0	0	0	1	0	0	0	2998	188	7	5	110	5	CD300A	17	72469738	Missense_Mutation	SNP	A	TCGA-B4-5844-01A-11D-1669-08	17934414	72469738	8725472	65	15200											
ATP8B3	148229	broad.mit.edu	37	19	1809703	1809703	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	1809703	C	T	1809703	3	4	236	1	0	0	0	0	1	0	0	0	1196	536	19	1	3713	1	ATP8B3	19	1809703	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08		1809703	57319280	66	15201											
CYP4F11	57834	broad.mit.edu	37	19	16032977	16032977	+	Splice_Site	SNP	C	C	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	16032977	C	A	16032977	5	1	236	1	0	0	0	0	0	0	1	0	4188	695	24	4	609	4	CYP4F11	19	16032977	Splice_Site	SNP	C	TCGA-B4-5844-01A-11D-1669-08	14223274	16032977	43096006	67	15202	197	2									
CYP4F11	57834	broad.mit.edu	37	19	16032978	16032978	+	Splice_Site	SNP	T	T	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	16032978	T	A	16032978	5	1	236	1	0	0	0	0	0	0	1	0	4188	1594	55	5	610	5	CYP4F11	19	16032978	Splice_Site	SNP	T	TCGA-B4-5844-01A-11D-1669-08	1	16032978	43096005	68	15203	197	2									
EPS15L1	58513	broad.mit.edu	37	19	16528867	16528867	+	Silent	SNP	G	G	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	16528867	G	A	16528867	2	1	236	1	0	0	0	0	0	0	0	1	5195	1049	37	1		1	EPS15L1	19	16528867	Silent	SNP	G	TCGA-B4-5844-01A-11D-1669-08	495889	16528867	42600116	69	15204											
ZNF536	9745	broad.mit.edu	37	19	30936076	30936076	+	Missense_Mutation	SNP	G	G	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	30936076	G	T	30936076	3	4	236	1	0	0	0	0	1	0	0	0	17986	1203	42	4	1609	4	ZNF536	19	30936076	Missense_Mutation	SNP	G	TCGA-B4-5844-01A-11D-1669-08	14407209	30936076	28192907	70	15205											
CEACAM5	1048	broad.mit.edu	37	19	42221598	42221598	+	Missense_Mutation	SNP	A	A	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	42221598	A	C	42221598	3	2	236	1	0	0	0	0	1	0	0	0	3197	101	4	5	1201	5	CEACAM5	19	42221598	Missense_Mutation	SNP	A	TCGA-B4-5844-01A-11D-1669-08	11285522	42221598	16907385	71	15206											
CHGB	1114	broad.mit.edu	37	20	5903084	5903084	+	Silent	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	5903084	C	T	5903084	2	4	236	1	0	0	0	0	0	0	0	1	3341	668	24	2		2	CHGB	20	5903084	Silent	SNP	C	TCGA-B4-5844-01A-11D-1669-08		5903084	57122436	72	15207											
BRWD1	54014	broad.mit.edu	37	21	40582046	40582046	+	Missense_Mutation	SNP	T	T	C			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	C	40582046	T	C	40582046	3	2	236	1	0	0	0	0	1	0	0	0	1527	1493	52	3	3157	3	BRWD1	21	40582046	Missense_Mutation	SNP	T	TCGA-B4-5844-01A-11D-1669-08		40582046	7547849	73	15208											
RPL3	6122	broad.mit.edu	37	22	39711444	39711444	+	Silent	SNP	A	A	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	39711444	A	T	39711444	2	4	236	1	0	0	0	0	0	0	0	1	13592	175	7	5		5	RPL3	22	39711444	Silent	SNP	A	TCGA-B4-5844-01A-11D-1669-08		39711444	11593122	74	15209											
MOV10L1	54456	broad.mit.edu	37	22	50552903	50552903	+	Silent	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	50552903	C	T	50552903	2	4	236	1	0	0	0	0	0	0	0	1	9726	506	18	2		2	MOV10L1	22	50552903	Silent	SNP	C	TCGA-B4-5844-01A-11D-1669-08	10841459	50552903	751663	75	15210											
PLXNB2	23654	broad.mit.edu	37	22	50728367	50728370	+	Frame_Shift_Del	DEL	TGTG	TGTG	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	50728370	TGTG	-	50728367	7	5	236	1	0	1	0	1	0	0	0	0	12131	1580	55	0	5009	0	PLXNB2	22	50728367	Frame_Shift_Del	DEL	TGTG	TCGA-B4-5844-01A-11D-1669-08	175464	50728367	576199	76	15211											
TEX11	56159	broad.mit.edu	37	X	69774533	69774533	+	Missense_Mutation	SNP	T	T	G			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	G	69774533	T	G	69774533	3	3	236	1	0	0	0	0	1	0	0	0	15786	1464	51	5	539	5	TEX11	23	69774533	Missense_Mutation	SNP	T	TCGA-B4-5844-01A-11D-1669-08		69774533	85496027	77	15212											
ATRX	546	broad.mit.edu	37	X	76919038	76919038	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	-	76919038	T	-	76919038	7	5	236	1	0	1	0	1	0	0	0	0	1208	1493	52	0	3621	0	ATRX	23	76919038	Frame_Shift_Del	DEL	T	TCGA-B4-5844-01A-11D-1669-08	7144505	76919038	78351522	78	15213											
PCDH11X	27328	broad.mit.edu	37	X	91134175	91134175	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	91134175	C	T	91134175	3	4	236	1	0	0	0	0	1	0	0	0	11515	855	30	2	2942	2	PCDH11X	23	91134175	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	14215137	91134175	64136385	79	15214											
RGAG1	57529	broad.mit.edu	37	X	109694660	109694660	+	Missense_Mutation	SNP	T	T	A			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	A	109694660	T	A	109694660	3	1	236	1	0	0	0	0	1	0	0	0	13287	1406	49	5	817	5	RGAG1	23	109694660	Missense_Mutation	SNP	T	TCGA-B4-5844-01A-11D-1669-08	18560485	109694660	45575900	80	15215											
UBE2NL	389898	broad.mit.edu	37	X	142967630	142967630	+	Missense_Mutation	SNP	C	C	T			TCGA-B4-5844-01A-11D-1669-08	TCGA-B4-5844-10A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e5aea05-4ff2-43ea-a516-26dcef52b132	773f9a87-7513-4ac8-a8a3-833470984fb4	T	142967630	C	T	142967630	3	4	236	1	0	0	0	0	1	0	0	0	16879	710	25	2	430	2	UBE2NL	23	142967630	Missense_Mutation	SNP	C	TCGA-B4-5844-01A-11D-1669-08	33272970	142967630	12302930	81	15216											
APITD1	378708	hgsc.bcm.edu	37	1	10494765	10494765	+	RNA	SNP	T	T	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	10494765	T	C	10494765	1	2	237	0	1	0	0	0	0	0	0	0	775	1508	52	3		3	APITD1	1	10494765	RNA	SNP	T	TCGA-B8-4143-01A-01D-1806-10		10494765	238755856	1	15217											
PRAMEF1	65121	broad.mit.edu	37	1	12853441	12853441	+	Missense_Mutation	SNP	C	A	A	rs75270454	bycluster;byfrequency	TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	12853441	A	A	12853441	3	1	237	1	0	0	0	0	1	0	0	0	12435	739	26	4	67	4	PRAMEF1	1	12853441	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	2358676	12853441	236397180	2	15218											
ZNF684	127396	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	41007325	41007325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	41007325	G	A	41007325	3	1	237	1	0	0	0	0	1	0	0	0	18103	943	33	2	191	2	ZNF684	1	41007325	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	28153884	41007325	208243296	3	15219											
NRD1	4898	hgsc.bcm.edu	37	1	52306082	52306082	+	Missense_Mutation	SNP	A	A	T	rs62639317		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	52306082	A	T	52306082	3	4	237	1	0	0	0	0	1	0	0	0	10652	159	6	5	3341	5	NRD1	1	52306082	Missense_Mutation	SNP	A	TCGA-B8-4143-01A-01D-1806-10	11298757	52306082	196944539	4	15220											
GNAT2	2780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110151406	110151406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	110151406	T	C	110151406	3	2	237	1	0	0	0	0	1	0	0	0	6519	1667	58	3	776	3	GNAT2	1	110151406	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	57845324	110151406	139099215	5	15221											
AMPD1	270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	115221022	115221022	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	115221022	T	A	115221022	4	1	237	1	0	0	0	0	0	1	0	0	585	1850	64	5	1255	5	AMPD1	1	115221022	Nonsense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	5069616	115221022	134029599	6	15222											
HIST2H2AC	8338	hgsc.bcm.edu	37	1	149858563	149858563	+	Silent	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	149858563	C	T	149858563	2	4	237	1	0	0	0	0	0	0	0	1	7185	581	21	2		2	HIST2H2AC	1	149858563	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	34637541	149858563	99392058	7	15223			1	29		4	4	866	N	C_A	2.464746e-09
HIST2H2AC	8338	broad.mit.edu;hgsc.bcm.edu	37	1	149858593	149858593	+	Silent	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	149858593	C	T	149858593	2	4	237	1	0	0	0	0	0	0	0	1	7185	726	26	2		2	HIST2H2AC	1	149858593	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	30	149858593	99392028	8	15224			1	29		4	4	866	N	C_A	2.464746e-09
HIST2H2AB	317772	hgsc.bcm.edu	37	1	149859101	149859101	+	Silent	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	149859101	C	T	149859101	2	4	237	1	0	0	0	0	0	0	0	1	7184	912	32	2		2	HIST2H2AB	1	149859101	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	508	149859101	99391520	9	15225			1	29		4	4	866	N	C_A	2.464746e-09
HIST2H2AB	317772	broad.mit.edu	37	1	149859428	149859428	+	Silent	SNP	A	G	G	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	G	149859428	G	G	149859428	2	3	237	1	0	0	0	0	0	0	0	1	7184	407	15	3		3	HIST2H2AB	1	149859428	Silent	SNP	A	TCGA-B8-4143-01A-01D-1806-10	327	149859428	99391193	10	15226			1	29		4	4	866	N	C_A	2.464746e-09
PXDN	7837	broad.mit.edu;ucsc.edu	37	2	1652062	1652062	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	1652062	T	T	1652062	3	4	237	1	0	0	0	0	1	0	0	0	12860	855	30	2	977	2	PXDN	2	1652062	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10		1652062	241547311	11	15227											
DYSF	8291	broad.mit.edu	37	2	71825715	71825715	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	71825715	C	C	71825715	3	2	237	1	0	0	0	0	1	0	0	0	4861	1783	62	3	3864	3	DYSF	2	71825715	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	70173653	71825715	171373658	12	15228											
ACVR1C	130399	hgsc.bcm.edu	37	2	158443712	158443712	+	Silent	SNP	C	C	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	158443712	C	A	158443712	2	1	237	1	0	0	0	0	0	0	0	1	222	697	25	4		4	ACVR1C	2	158443712	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	86617997	158443712	84755661	13	15229											
BAZ2B	29994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160240140	160240140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	160240140	C	A	160240140	3	1	237	1	0	0	0	0	1	0	0	0	1332	624	22	4	2824	4	BAZ2B	2	160240140	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	1796428	160240140	82959233	14	15230											
SLC4A10	57282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	162696378	162696378	+	Silent	SNP	A	A	G	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	G	162696378	A	G	162696378	2	3	237	1	0	0	0	0	0	0	0	1	14664	175	7	3		3	SLC4A10	2	162696378	Silent	SNP	A	TCGA-B8-4143-01A-01D-1806-10	2456238	162696378	80502995	15	15231											
GCA	25801	hgsc.bcm.edu;ucsc.edu	37	2	163204196	163204196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	G	163204196	A	G	163204196	3	3	237	1	0	0	0	0	1	0	0	0	6290	159	6	3	142	3	GCA	2	163204196	Missense_Mutation	SNP	A	TCGA-B8-4143-01A-01D-1806-10	507818	163204196	79995177	16	15232											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179404327	179404327	+	Missense_Mutation	SNP	T	T	G	rs191054704	by1000genomes	TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	G	179404327	T	G	179404327	3	3	237	1	0	0	0	0	1	0	0	0	16747	1435	50	5	9558	5	TTN	2	179404327	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	16200131	179404327	63795046	17	15233											
ANKRD44	91526	broad.mit.edu;ucsc.edu	37	2	197946412	197946412	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	197946412	T	T	197946412	3	4	237	1	0	0	0	0	1	0	0	0	672	922	32	2	1387	2	ANKRD44	2	197946412	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	18542085	197946412	45252961	18	15234											
EIF4E2	9470	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	233431788	233431788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	233431788	G	A	233431788	3	1	237	1	0	0	0	0	1	0	0	0	5032	1188	41	2	551	2	EIF4E2	2	233431788	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	35485376	233431788	9767585	19	15235											
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238280964	238280964	+	Silent	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	238280964	C	T	238280964	2	4	237	1	0	0	0	0	0	0	0	1	3703	622	22	2		2	COL6A3	2	238280964	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	4849176	238280964	4918409	20	15236											
C2orf85	0	broad.mit.edu	37	2	242815348	242815348	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	242815348	C	C	242815348	3	2	237	1	0	0	0	0	1	0	0	0	2202	1241	43	4	1647	4	C2orf85	2	242815348	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	4534384	242815348	384025	21	15237											
KIF15	56992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	44847461	44847461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	44847461	C	T	44847461	3	4	237	1	0	0	0	0	1	0	0	0	8284	826	29	2	2016	2	KIF15	3	44847461	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10		44847461	153174969	22	15238											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52437163	52437163	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	52437163	G	C	52437163	4	2	237	1	0	0	0	0	0	1	0	0	1311	1024	36	4	324	4	BAP1	3	52437163	Nonsense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	7589702	52437163	145585267	23	15239											
TMEM165	55858	hgsc.bcm.edu;ucsc.edu	37	4	56284067	56284067	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	-	56284067	T	-	56284067	7	5	237	1	0	1	0	1	0	0	0	0	16092	1493	52	0	721	0	TMEM165	4	56284067	Frame_Shift_Del	DEL	T	TCGA-B8-4143-01A-01D-1806-10		56284067	134870209	24	15240											
UGT2A1	10941	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	70460937	70460937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	70460937	C	T	70460937	3	4	237	1	0	0	0	0	1	0	0	0	16965	797	28	2	568	2	UGT2A1	4	70460937	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	14176870	70460937	120693339	25	15241											
HNRNPD	3184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83280713	83280713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	83280713	C	T	83280713	3	4	237	1	0	0	0	0	1	0	0	0	7271	478	17	2	721	2	HNRNPD	4	83280713	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	12819776	83280713	107873563	26	15242											
CARD6	84674	hgsc.bcm.edu;ucsc.edu	37	5	40854473	40854475	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	-	40854475	GTC	-	40854473	7	5	237	1	0	1	0	1	0	0	0	0	2652	1020	36	0	3049	0	CARD6	5	40854473	In_Frame_Del	DEL	GTC	TCGA-B8-4143-01A-01D-1806-10		40854473	140060787	27	15243											
LRRC16A	55604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	25285102	25285102	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	25285102	G	T	25285102	4	4	237	1	0	0	0	0	0	1	0	0	8978	1175	41	4	109	4	LRRC16A	6	25285102	Nonsense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10		25285102	145829965	28	15244											
HIST1H2BJ	8970	broad.mit.edu;hgsc.bcm.edu	37	6	27100432	27100432	+	Missense_Mutation	SNP	C	C	T	rs137867381	alternate_allele	TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	27100432	C	T	27100432	3	4	237	1	0	0	0	0	1	0	0	0	7156	797	28	2	286	2	HIST1H2BJ	6	27100432	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	1815330	27100432	144014635	29	15245											
GPR111	222611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	47649747	47649747	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	-	47649747	C	-	47649747	7	5	237	1	0	1	0	1	0	0	0	0	6635	726	26	0	1266	0	GPR111	6	47649747	Frame_Shift_Del	DEL	C	TCGA-B8-4143-01A-01D-1806-10	20549315	47649747	123465320	30	15246											
CRISP2	7180	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	49667553	49667553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	49667553	T	C	49667553	3	2	237	1	0	0	0	0	1	0	0	0	3882	1696	59	3	516	3	CRISP2	6	49667553	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	2017806	49667553	121447514	31	15247											
PKHD1	5314	hgsc.bcm.edu;ucsc.edu	37	6	51747999	51747999	+	Silent	SNP	C	C	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	51747999	C	A	51747999	2	1	237	1	0	0	0	0	0	0	0	1	11978	813	29	4		4	PKHD1	6	51747999	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	2080446	51747999	119367068	32	15248											
FAM54A	0	hgsc.bcm.edu;ucsc.edu	37	6	136560875	136560875	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	136560875	G	A	136560875	4	1	237	1	0	0	0	0	0	1	0	0	5589	1299	45	2	571	2	FAM54A	6	136560875	Nonsense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	84812876	136560875	34554192	33	15249											
DPY19L1	23333	broad.mit.edu;hgsc.bcm.edu	37	7	35029520	35029520	+	Silent	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	35029520	C	T	35029520	2	4	237	1	0	0	0	0	0	0	0	1	4742	477	17	2		2	DPY19L1	7	35029520	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10		35029520	124109143	34	15250											
MYO1G	64005	broad.mit.edu;ucsc.edu	37	7	45005737	45005737	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	45005737	A	A	45005737	3	1	237	1	0	0	0	0	1	0	0	0	10081	1667	58	5	992	5	MYO1G	7	45005737	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	9976217	45005737	114132926	35	15251											
FGL2	10875	broad.mit.edu;ucsc.edu	37	7	76826154	76826154	+	Silent	SNP	C	T	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	76826154	T	T	76826154	2	4	237	1	0	0	0	0	0	0	0	1	5880	697	25	2		2	FGL2	7	76826154	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	31820417	76826154	82312509	36	15252											
SMO	6608	broad.mit.edu;hgsc.bcm.edu	37	7	128845209	128845209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	128845209	G	A	128845209	3	1	237	1	0	0	0	0	1	0	0	0	14813	1087	38	1	713	1	SMO	7	128845209	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	52019055	128845209	30293454	37	15253											
AHCYL2	23382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129064971	129064971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	129064971	C	A	129064971	3	1	237	1	0	0	0	0	1	0	0	0	411	623	22	4	1877	4	AHCYL2	7	129064971	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	219762	129064971	30073692	38	15254											
BRAF	673	hgsc.bcm.edu	37	7	140550005	140550005	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	140550005	T	A	140550005	3	1	237	1	0	0	0	0	1	0	0	0	1498	1493	52	5	2222	5	BRAF	7	140550005	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	11485034	140550005	18588658	39	15255											
COL22A1	169044	broad.mit.edu;ucsc.edu	37	8	139825225	139825225	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	139825225	A	A	139825225	3	1	237	1	0	0	0	0	1	0	0	0	3683	913	32	4	3829	4	COL22A1	8	139825225	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10		139825225	6538797	40	15256											
TMOD1	7111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	100326390	100326390	+	Silent	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	100326390	G	A	100326390	2	1	237	1	0	0	0	0	0	0	0	1	16245	1074	38	1		1	TMOD1	9	100326390	Silent	SNP	G	TCGA-B8-4143-01A-01D-1806-10		100326390	40887041	41	15257											
TRUB2	26995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131077879	131077879	+	Silent	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	131077879	G	A	131077879	2	1	237	1	0	0	0	0	0	0	0	1	16615	1161	41	2		2	TRUB2	9	131077879	Silent	SNP	G	TCGA-B8-4143-01A-01D-1806-10	30751489	131077879	10135552	42	15258											
CUBN	8029	broad.mit.edu;ucsc.edu	37	10	16975260	16975260	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	16975260	A	A	16975260	3	1	237	1	0	0	0	0	1	0	0	0	4053	1667	58	5	5033	5	CUBN	10	16975260	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10		16975260	118559487	43	15259											
DYDC1	143241	hgsc.bcm.edu	37	10	82112339	82112339	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	82112339	G	A	82112339	4	1	237	1	0	0	0	0	0	1	0	0	4840	1299	45	2	538	2	DYDC1	10	82112339	Nonsense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	65137079	82112339	53422408	44	15260											
LIPN	643418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	90534901	90534901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	90534901	A	C	90534901	3	2	237	1	0	0	0	0	1	0	0	0	8835	101	4	5	974	5	LIPN	10	90534901	Missense_Mutation	SNP	A	TCGA-B8-4143-01A-01D-1806-10	8422562	90534901	44999846	45	15261											
PKD2L1	9033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	102056953	102056953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	102056953	C	A	102056953	3	1	237	1	0	0	0	0	1	0	0	0	11974	564	20	4	1492	4	PKD2L1	10	102056953	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	11522052	102056953	33477794	46	15262											
ATRNL1	26033	hgsc.bcm.edu	37	10	116930981	116930981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	116930981	G	T	116930981	3	4	237	1	0	0	0	0	1	0	0	0	1207	1377	48	4	1309	4	ATRNL1	10	116930981	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	14874028	116930981	18603766	47	15263											
OR4P4	81300	broad.mit.edu;ucsc.edu	37	11	55406555	55406555	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	G	55406555	G	G	55406555	3	3	237	1	0	0	0	0	1	0	0	0	11087	217	8	3	724	3	OR4P4	11	55406555	Missense_Mutation	SNP	A	TCGA-B8-4143-01A-01D-1806-10		55406555	79599961	48	15264											
MS4A14	84689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60164088	60164088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	60164088	G	A	60164088	3	1	237	1	0	0	0	0	1	0	0	0	9865	1145	40	1	39	1	MS4A14	11	60164088	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	4757533	60164088	74842428	49	15265											
PLCB3	5331	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64029901	64029901	+	Silent	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	64029901	G	A	64029901	2	1	237	1	0	0	0	0	0	0	0	1	12036	1103	39	1		1	PLCB3	11	64029901	Silent	SNP	G	TCGA-B8-4143-01A-01D-1806-10	3865813	64029901	70976615	50	15266											
SYVN1	84447	broad.mit.edu	37	11	64897312	64897312	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	64897312	C	C	64897312	3	2	237	1	0	0	0	0	1	0	0	0	15499	1464	51	3	381	3	SYVN1	11	64897312	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	867411	64897312	70109204	51	15267											
MMP7	4316	hgsc.bcm.edu	37	11	102394122	102394122	+	Silent	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	102394122	G	A	102394122	2	1	237	1	0	0	0	0	0	0	0	1	9674	1165	41	2		2	MMP7	11	102394122	Silent	SNP	G	TCGA-B8-4143-01A-01D-1806-10	37496810	102394122	32612394	52	15268											
RDX	5962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	110150412	110150412	+	Silent	SNP	C	C	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	110150412	C	A	110150412	2	1	237	1	0	0	0	0	0	0	0	1	13211	871	31	4		4	RDX	11	110150412	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	7756290	110150412	24856104	53	15269											
ZBTB16	7704	broad.mit.edu;ucsc.edu	37	11	113934420	113934420	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	113934420	T	T	113934420	3	4	237	1	0	0	0	0	1	0	0	0	17538	536	19	1	400	1	ZBTB16	11	113934420	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	3784008	113934420	21072096	54	15270											
ITPR2	3709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	26553126	26553126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	26553126	C	T	26553126	3	4	237	1	0	0	0	0	1	0	0	0	7928	536	19	1	660	1	ITPR2	12	26553126	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10		26553126	107298769	55	15271											
C12orf11	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	27066946	27066946	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	27066946	G	C	27066946	3	2	237	1	0	0	0	0	1	0	0	0	1677	1000	35	4	605	4	C12orf11	12	27066946	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	513820	27066946	106784949	56	15272											
KIF21A	55605	hgsc.bcm.edu	37	12	39726836	39726836	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	39726836	G	C	39726836	4	2	237	1	0	0	0	0	0	1	0	0	8295	1294	45	4	2543	4	KIF21A	12	39726836	Nonsense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	12659890	39726836	94125059	57	15273											
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49444338	49444338	+	Silent	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	49444338	C	T	49444338	2	4	237	1	0	0	0	0	0	0	0	1	9628	639	23	1		1	MLL2	12	49444338	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	9717502	49444338	84407557	58	15274											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53686061	53686061	+	Splice_Site	SNP	G	G	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	53686061	G	T	53686061	5	4	237	1	0	0	0	0	0	0	1	0	5255	1043	36	4	5902	4	ESPL1	12	53686061	Splice_Site	SNP	G	TCGA-B8-4143-01A-01D-1806-10	4241723	53686061	80165834	59	15275											
MED13L	23389	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	116409971	116409971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	116409971	C	T	116409971	3	4	237	1	0	0	0	0	1	0	0	0	9438	478	17	2	854	2	MED13L	12	116409971	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	62723910	116409971	17441924	60	15276											
ATP8A2	51761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	26413708	26413708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	26413708	G	A	26413708	3	1	237	1	0	0	0	0	1	0	0	0	1193	1087	38	1	3020	1	ATP8A2	13	26413708	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10		26413708	88756170	61	15277											
NBEA	26960	broad.mit.edu;hgsc.bcm.edu	37	13	36046544	36046544	+	Silent	SNP	G	G	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	36046544	G	T	36046544	2	4	237	1	0	0	0	0	0	0	0	1	10194	1335	47	4		4	NBEA	13	36046544	Silent	SNP	G	TCGA-B8-4143-01A-01D-1806-10	9632836	36046544	79123334	62	15278											
RCBTB2	1102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	49084795	49084795	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	49084795	T	A	49084795	3	1	237	1	0	0	0	0	1	0	0	0	13185	1406	49	5	783	5	RCBTB2	13	49084795	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	13038251	49084795	66085083	63	15279											
MIPOL1	145282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	37777677	37777677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	37777677	G	A	37777677	3	1	237	1	0	0	0	0	1	0	0	0	9600	943	33	2	807	2	MIPOL1	14	37777677	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10		37777677	69571863	64	15280											
GALC	2581	hgsc.bcm.edu	37	14	88406277	88406277	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	G	88406277	T	G	88406277	3	3	237	1	0	0	0	0	1	0	0	0	6208	1841	64	5	182	5	GALC	14	88406277	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	50628600	88406277	18943263	65	15281											
DICER1	23405	hgsc.bcm.edu	37	14	95577719	95577719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	95577719	C	A	95577719	4	1	237	1	0	0	0	0	0	1	0	0	4523	835	29	4	3633	4	DICER1	14	95577719	Nonsense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	7171442	95577719	11771821	66	15282											
CHRM5	1133	broad.mit.edu	37	15	34355731	34355731	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	34355731	A	A	34355731	4	1	237	1	0	0	0	0	0	1	0	0	3382	1270	44	2	815	2	CHRM5	15	34355731	Nonsense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10		34355731	68175661	67	15283											
NDUFAF1	51103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41689026	41689026	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	41689026	G	C	41689026	3	2	237	1	0	0	0	0	1	0	0	0	10281	1203	42	4	767	4	NDUFAF1	15	41689026	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	7333295	41689026	60842366	68	15284											
SPTBN5	51332	hgsc.bcm.edu	37	15	42178134	42178135	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	-	42178135	CT	-	42178134	7	5	237	1	0	1	0	1	0	0	0	0	15134	565	20	0	9953	0	SPTBN5	15	42178134	Frame_Shift_Del	DEL	CT	TCGA-B8-4143-01A-01D-1806-10	489108	42178134	60353258	69	15285											
CLPX	10845	hgsc.bcm.edu	37	15	65471324	65471324	+	Silent	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	65471324	C	T	65471324	2	4	237	1	0	0	0	0	0	0	0	1	3558	796	28	2		2	CLPX	15	65471324	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	23293190	65471324	37060068	70	15286											
TELO2	9894	broad.mit.edu	37	16	1550655	1550655	+	Silent	SNP	C	T	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	1550655	T	T	1550655	2	4	237	1	0	0	0	0	0	0	0	1	15769	871	31	1		1	TELO2	16	1550655	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10		1550655	88804098	71	15287											
MKL2	57496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	14328057	14328057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	14328057	G	A	14328057	3	1	237	1	0	0	0	0	1	0	0	0	9609	942	33	2	774	2	MKL2	16	14328057	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	12777402	14328057	76026696	72	15288											
HYDIN	54768	broad.mit.edu;ucsc.edu	37	16	70986456	70986456	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	70986456	A	A	70986456	3	1	237	1	0	0	0	0	1	0	0	0	7474	826	29	4	9150	4	HYDIN	16	70986456	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	56658399	70986456	19368297	73	15289											
GRB7	2886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37899552	37899552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	37899552	C	T	37899552	3	4	237	1	0	0	0	0	1	0	0	0	6766	623	22	2	597	2	GRB7	17	37899552	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10		37899552	43295658	74	15290											
SOX9	6662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	70120330	70120330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	70120330	C	A	70120330	3	1	237	1	0	0	0	0	1	0	0	0	14971	506	18	4	1342	4	SOX9	17	70120330	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	32220778	70120330	11074880	75	15291											
RECQL5	9400	broad.mit.edu;ucsc.edu	37	17	73654527	73654527	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	73654527	C	C	73654527	3	2	237	1	0	0	0	0	1	0	0	0	13216	130	5	5	2118	5	RECQL5	17	73654527	Missense_Mutation	SNP	A	TCGA-B8-4143-01A-01D-1806-10	3534197	73654527	7540683	76	15292											
ANAPC11	51529	broad.mit.edu;hgsc.bcm.edu	37	17	79857246	79857246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	79857246	G	A	79857246	3	1	237	1	0	0	0	0	1	0	0	0	600	1117	39	1	244	1	ANAPC11	17	79857246	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	6202719	79857246	1337964	77	15293											
LILRA3	11026	broad.mit.edu;hgsc.bcm.edu	37	19	54803946	54803946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	54803946	C	T	54803946	3	4	237	1	0	0	0	0	1	0	0	0	8793	739	26	2	1276	2	LILRA3	19	54803946	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10		54803946	4325037	78	15294											
CENPB	1059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3765589	3765589	+	Silent	SNP	A	A	G	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	G	3765589	A	G	3765589	2	3	237	1	0	0	0	0	0	0	0	1	3229	156	6	3		3	CENPB	20	3765589	Silent	SNP	A	TCGA-B8-4143-01A-01D-1806-10		3765589	59259931	79	15295											
RBM39	9584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34312531	34312531	+	Silent	SNP	T	T	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	34312531	T	C	34312531	2	2	237	1	0	0	0	0	0	0	0	1	13146	1722	60	3		3	RBM39	20	34312531	Silent	SNP	T	TCGA-B8-4143-01A-01D-1806-10	30546942	34312531	28712989	80	15296											
KRTAP13-1	140258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	31768458	31768458	+	Silent	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	31768458	C	T	31768458	2	4	237	1	0	0	0	0	0	0	0	1	8529	518	18	2		2	KRTAP13-1	21	31768458	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10		31768458	16361437	81	15297											
DSCR6	53820	broad.mit.edu	37	21	38390280	38390280	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	38390280	C	C	38390280	3	2	237	1	0	0	0	0	1	0	0	0	4775	1667	58	3	360	3	DSCR6	21	38390280	Missense_Mutation	SNP	T	TCGA-B8-4143-01A-01D-1806-10	6621822	38390280	9739615	82	15298											
DCAF8L2	347442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	27766775	27766775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	27766775	C	T	27766775	3	4	237	1	0	0	0	0	1	0	0	0	4280	536	19	1	1765	1	DCAF8L2	23	27766775	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10		27766775	127503785	83	15299											
HUWE1	10075	broad.mit.edu	37	X	53586385	53586385	+	Silent	SNP	G	T	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	53586385	T	T	53586385	2	4	237	1	0	0	0	0	0	0	0	1	7468	1280	45	4		4	HUWE1	23	53586385	Silent	SNP	G	TCGA-B8-4143-01A-01D-1806-10	25819610	53586385	101684175	84	15300											
KIAA1210	57481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	118217056	118217056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	C	118217056	G	C	118217056	3	2	237	1	0	0	0	0	1	0	0	0	8221	1261	44	4	261	4	KIAA1210	23	118217056	Missense_Mutation	SNP	G	TCGA-B8-4143-01A-01D-1806-10	64630671	118217056	37053504	85	15301											
ZBTB33	10009	hgsc.bcm.edu	37	X	119387833	119387834	+	In_Frame_Ins	INS	-	-	TGA	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	TGA	119387834	-	TGA	119387833	7	5	237	1	0	1	1	0	0	0	0	0	17548	913	32	0	565	0	ZBTB33	23	119387833	In_Frame_Ins	INS	-	TCGA-B8-4143-01A-01D-1806-10	1170777	119387833	35882727	86	15302											
DDX26B	203522	hgsc.bcm.edu	37	X	134715017	134715017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	T	134715017	C	T	134715017	3	4	237	1	0	0	0	0	1	0	0	0	4355	681	24	2	2488	2	DDX26B	23	134715017	Missense_Mutation	SNP	C	TCGA-B8-4143-01A-01D-1806-10	15327184	134715017	20555543	87	15303											
CLIC2	1193	broad.mit.edu;ucsc.edu	37	X	154563725	154563725	+	Silent	SNP	C	A	A	novel		TCGA-B8-4143-01A-01D-1806-10	TCGA-B8-4143-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bb186c78-1052-48ec-97f4-c94bddf0df72	51a86b5e-507a-41c0-b689-4d1fc3f6c507	A	154563725	A	A	154563725	2	1	237	1	0	0	0	0	0	0	0	1	3528	697	25	4		4	CLIC2	23	154563725	Silent	SNP	C	TCGA-B8-4143-01A-01D-1806-10	19848708	154563725	706835	88	15304											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201079330	201079330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	G	201079330	T	G	201079330	3	3	238	1	0	0	0	0	1	0	0	0	2549	1464	51	5	5573	5	CACNA1S	1	201079330	Missense_Mutation	SNP	T	TCGA-B8-4146-01B-11D-1669-08		201079330	48171291	1	15305											
ZNF669	79862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247265092	247265092	+	Silent	SNP	T	T	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	247265092	T	C	247265092	2	2	238	1	0	0	0	0	0	0	0	1	18088	1797	62	3		3	ZNF669	1	247265092	Silent	SNP	T	TCGA-B8-4146-01B-11D-1669-08	46185762	247265092	1985529	2	15306	198	2									
ZNF669	79862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247265093	247265093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	247265093	C	A	247265093	3	1	238	1	0	0	0	0	1	0	0	0	18088	869	30	4	1013	4	ZNF669	1	247265093	Missense_Mutation	SNP	C	TCGA-B8-4146-01B-11D-1669-08	1	247265093	1985528	3	15307	198	2									
NLRC4	58484	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32476580	32476580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	32476580	T	A	32476580	3	1	238	1	0	0	0	0	1	0	0	0	10476	1406	49	5	2745	5	NLRC4	2	32476580	Missense_Mutation	SNP	T	TCGA-B8-4146-01B-11D-1669-08		32476580	210722793	4	15308											
CACNB4	785	broad.mit.edu;hgsc.bcm.edu	37	2	152709962	152709962	+	Silent	SNP	T	T	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	152709962	T	C	152709962	2	2	238	1	0	0	0	0	0	0	0	1	2557	1594	55	3		3	CACNB4	2	152709962	Silent	SNP	T	TCGA-B8-4146-01B-11D-1669-08	120233382	152709962	90489411	5	15309											
EOMES	8320	broad.mit.edu	37	3	27763289	27763289	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	-	27763289	-	-	27763289	7	5	238	1	0	1	0	1	0	0	0	0	5149	1580	55	0	1587	0	EOMES	3	27763289	Frame_Shift_Del	DEL	T	TCGA-B8-4146-01B-11D-1669-08		27763289	170259141	6	15310											
SIDT1	54847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113325904	113325904	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	113325904	G	C	113325904	3	2	238	1	0	0	0	0	1	0	0	0	14315	1203	42	4	1479	4	SIDT1	3	113325904	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08	85562615	113325904	84696526	7	15311											
PEX5L	51555	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	179526182	179526182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	179526182	G	A	179526182	3	1	238	1	0	0	0	0	1	0	0	0	11756	1348	47	2	496	2	PEX5L	3	179526182	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08	66200278	179526182	18496248	8	15312											
ZNF721	170960	hgsc.bcm.edu;ucsc.edu	37	4	437566	437566	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	-	437566	A	-	437566	7	5	238	1	0	1	0	1	0	0	0	0	18134	359	13	0	2085	0	ZNF721	4	437566	Frame_Shift_Del	DEL	A	TCGA-B8-4146-01B-11D-1669-08		437566	190716710	9	15313											
KIAA0232	9778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	6843902	6843902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	6843902	G	A	6843902	3	1	238	1	0	0	0	0	1	0	0	0	8170	1377	48	2	346	2	KIAA0232	4	6843902	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08	6406336	6843902	184310374	10	15314											
ZNF518B	85460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	10447375	10447375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	10447375	T	C	10447375	3	2	238	1	0	0	0	0	1	0	0	0	17975	1551	54	3	2650	3	ZNF518B	4	10447375	Missense_Mutation	SNP	T	TCGA-B8-4146-01B-11D-1669-08	3603473	10447375	180706901	11	15315											
ANP32C	23520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	165118171	165118172	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	T	165118172	-	T	165118171	7	5	238	1	0	1	1	0	0	0	0	0	707	912	32	0	14	0	ANP32C	4	165118171	Frame_Shift_Ins	INS	-	TCGA-B8-4146-01B-11D-1669-08	154670796	165118171	26036105	12	15316											
HSPA9	3313	broad.mit.edu;hgsc.bcm.edu	37	5	137910976	137910976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	137910976	C	A	137910976	3	1	238	1	0	0	0	0	1	0	0	0	7424	536	19	4	2075	4	HSPA9	5	137910976	Missense_Mutation	SNP	C	TCGA-B8-4146-01B-11D-1669-08		137910976	43004284	13	15317											
BTNL8	79908	hgsc.bcm.edu	37	5	180376249	180376249	+	Missense_Mutation	SNP	C	C	T	rs149566660	bycluster;byfrequency;by1000genomes	TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	T	180376249	C	T	180376249	3	4	238	1	0	0	0	0	1	0	0	0	1569	536	19	1	1028	1	BTNL8	5	180376249	Missense_Mutation	SNP	C	TCGA-B8-4146-01B-11D-1669-08	42465273	180376249	539011	14	15318											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56483775	56483775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	56483775	G	A	56483775	3	1	238	1	0	0	0	0	1	0	0	0	4785	1087	38	1	15346	1	DST	6	56483775	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08		56483775	114631292	15	15319											
PRIM2	5558	broad.mit.edu;hgsc.bcm.edu	37	6	57372299	57372299	+	Silent	SNP	G	G	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	57372299	G	A	57372299	2	1	238	1	0	0	0	0	0	0	0	1	12501	1252	44	2		2	PRIM2	6	57372299	Silent	SNP	G	TCGA-B8-4146-01B-11D-1669-08	888524	57372299	113742768	16	15320											
ZNF107	51427	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	64168953	64168953	+	Silent	SNP	C	C	T	rs139989226		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	T	64168953	C	T	64168953	2	4	238	1	0	0	0	0	0	0	0	1	17727	825	29	2		2	ZNF107	7	64168953	Silent	SNP	C	TCGA-B8-4146-01B-11D-1669-08		64168953	94969710	17	15321											
CLN8	2055	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	1728612	1728612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	T	1728612	C	T	1728612	3	4	238	1	0	0	0	0	1	0	0	0	3548	594	21	2	746	2	CLN8	8	1728612	Missense_Mutation	SNP	C	TCGA-B8-4146-01B-11D-1669-08		1728612	144635410	18	15322											
PGCP	0	hgsc.bcm.edu	37	8	97847356	97847357	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	T	97847357	-	T	97847356	7	5	238	1	0	1	1	0	0	0	0	0	11793	1261	44	0	595	0	PGCP	8	97847356	Frame_Shift_Ins	INS	-	TCGA-B8-4146-01B-11D-1669-08	96118744	97847356	48516666	19	15323											
ASTN2	23245	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	119413893	119413893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	G	119413893	C	G	119413893	3	3	238	1	0	0	0	0	1	0	0	0	1065	864	30	4	1180	4	ASTN2	9	119413893	Missense_Mutation	SNP	C	TCGA-B8-4146-01B-11D-1669-08		119413893	21799538	20	15324											
KCNMA1	3778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	78872137	78872137	+	Silent	SNP	C	C	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	78872137	C	A	78872137	2	1	238	1	0	0	0	0	0	0	0	1	8080	494	18	4		4	KCNMA1	10	78872137	Silent	SNP	C	TCGA-B8-4146-01B-11D-1669-08		78872137	56662610	21	15325											
FAM45A	404636	broad.mit.edu;hgsc.bcm.edu	37	10	120877121	120877121	+	Silent	SNP	C	C	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	120877121	C	A	120877121	2	1	238	1	0	0	0	0	0	0	0	1	5571	784	28	4		4	FAM45A	10	120877121	Silent	SNP	C	TCGA-B8-4146-01B-11D-1669-08	42004984	120877121	14657626	22	15326											
LRRC55	219527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56954876	56954876	+	Silent	SNP	G	G	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	56954876	G	A	56954876	2	1	238	1	0	0	0	0	0	0	0	1	9018	1335	47	2		2	LRRC55	11	56954876	Silent	SNP	G	TCGA-B8-4146-01B-11D-1669-08		56954876	78051640	23	15327											
SLC22A9	114571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63141417	63141418	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	-	63141418	TG	-	63141417	7	5	238	1	0	1	0	1	0	0	0	0	14474	1464	51	0	727	0	SLC22A9	11	63141417	Frame_Shift_Del	DEL	TG	TCGA-B8-4146-01B-11D-1669-08	6186541	63141417	71865099	24	15328											
CCDC82	79780	broad.mit.edu;ucsc.edu	37	11	96092231	96092231	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	T	96092231	T	T	96092231	3	4	238	1	0	0	0	0	1	0	0	0	2858	565	20	2	150	2	CCDC82	11	96092231	Missense_Mutation	SNP	C	TCGA-B8-4146-01B-11D-1669-08	32950814	96092231	38914285	25	15329											
OVCH1	341350	broad.mit.edu;hgsc.bcm.edu	37	12	29640641	29640641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	29640641	G	C	29640641	3	2	238	1	0	0	0	0	1	0	0	0	11330	1299	45	4	2615	4	OVCH1	12	29640641	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08		29640641	104211254	26	15330											
ASB8	140461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48543458	48543458	+	Silent	SNP	T	T	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	48543458	T	C	48543458	2	2	238	1	0	0	0	0	0	0	0	1	1029	1683	59	3		3	ASB8	12	48543458	Silent	SNP	T	TCGA-B8-4146-01B-11D-1669-08	18902817	48543458	85308437	27	15331											
MLL2	8085	broad.mit.edu	37	12	49427700	49427700	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	-	49427700	-	-	49427700	7	5	238	1	0	1	0	1	0	0	0	0	9628	842	30	0	5889	0	MLL2	12	49427700	Frame_Shift_Del	DEL	C	TCGA-B8-4146-01B-11D-1669-08	884242	49427700	84424195	28	15332											
HOXC8	3224	hgsc.bcm.edu;ucsc.edu	37	12	54403350	54403350	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	-	54403350	C	-	54403350	7	5	238	1	0	1	0	1	0	0	0	0	7323	842	30	0	284	0	HOXC8	12	54403350	Frame_Shift_Del	DEL	C	TCGA-B8-4146-01B-11D-1669-08	4975650	54403350	79448545	29	15333											
CHD8	57680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21875113	21875113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	21875113	G	C	21875113	3	2	238	1	0	0	0	0	1	0	0	0	3333	971	34	4	5036	4	CHD8	14	21875113	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08		21875113	85474427	30	15334											
ARF6	382	broad.mit.edu;hgsc.bcm.edu	37	14	50360965	50360965	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	50360965	T	A	50360965	3	1	238	1	0	0	0	0	1	0	0	0	848	1551	54	5	513	5	ARF6	14	50360965	Missense_Mutation	SNP	T	TCGA-B8-4146-01B-11D-1669-08	28485852	50360965	56988575	31	15335											
CDAN1	146059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43026449	43026449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	43026449	G	C	43026449	3	2	238	1	0	0	0	0	1	0	0	0	3056	971	34	4	2539	4	CDAN1	15	43026449	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08		43026449	59504943	32	15336											
LIPC	3990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	58834808	58834808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	58834808	G	A	58834808	3	1	238	1	0	0	0	0	1	0	0	0	8827	1116	39	1	546	1	LIPC	15	58834808	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08	15808359	58834808	43696584	33	15337											
SH2D7	646892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	78393416	78393416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	G	78393416	A	G	78393416	3	3	238	1	0	0	0	0	1	0	0	0	14252	391	14	3	839	3	SH2D7	15	78393416	Missense_Mutation	SNP	A	TCGA-B8-4146-01B-11D-1669-08	19558608	78393416	24137976	34	15338											
CPEB1	64506	broad.mit.edu	37	15	83215272	83215272	+	Splice_Site	SNP	C	A	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	83215272	A	A	83215272	5	1	238	1	0	0	0	0	0	0	1	0	3802	695	24	4	199	4	CPEB1	15	83215272	Splice_Site	SNP	C	TCGA-B8-4146-01B-11D-1669-08	4821856	83215272	19316120	35	15339											
ATP2A1	487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28898565	28898565	+	Silent	SNP	C	C	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	28898565	C	A	28898565	2	1	238	1	0	0	0	0	0	0	0	1	1136	813	29	4		4	ATP2A1	16	28898565	Silent	SNP	C	TCGA-B8-4146-01B-11D-1669-08		28898565	61456188	36	15340											
SREBF1	6720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	17723754	17723754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	T	17723754	C	T	17723754	3	4	238	1	0	0	0	0	1	0	0	0	15153	739	26	2	3342	2	SREBF1	17	17723754	Missense_Mutation	SNP	C	TCGA-B8-4146-01B-11D-1669-08		17723754	63471456	37	15341											
MED13	9969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	60028244	60028244	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	60028244	G	C	60028244	3	2	238	1	0	0	0	0	1	0	0	0	9437	1000	35	4	303	4	MED13	17	60028244	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08	42304490	60028244	21166966	38	15342											
EVPL	2125	broad.mit.edu;hgsc.bcm.edu	37	17	74018281	74018281	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	74018281	G	A	74018281	4	1	238	1	0	0	0	0	0	1	0	0	5294	1124	39	1	5535	1	EVPL	17	74018281	Nonsense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08	13990037	74018281	7176929	39	15343											
OR7C1	26664	hgsc.bcm.edu	37	19	14910636	14910636	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	A	14910636	T	A	14910636	3	1	238	1	0	0	0	0	1	0	0	0	11224	1696	59	5	651	5	OR7C1	19	14910636	Missense_Mutation	SNP	T	TCGA-B8-4146-01B-11D-1669-08		14910636	44218347	40	15344											
ABHD8	79575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17405546	17405546	+	Silent	SNP	G	G	T	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	T	17405546	G	T	17405546	2	4	238	1	0	0	0	0	0	0	0	1	87	932	33	4		4	ABHD8	19	17405546	Silent	SNP	G	TCGA-B8-4146-01B-11D-1669-08	2494910	17405546	41723437	41	15345											
ZBED4	9889	broad.mit.edu;hgsc.bcm.edu	37	22	50279076	50279076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	C	50279076	G	C	50279076	3	2	238	1	0	0	0	0	1	0	0	0	17532	1232	43	4	1768	4	ZBED4	22	50279076	Missense_Mutation	SNP	G	TCGA-B8-4146-01B-11D-1669-08		50279076	1025490	42	15346											
TEX13A	56157	hgsc.bcm.edu	37	X	104464282	104464282	+	Frame_Shift_Del	DEL	C	C	-	rs140438281		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	-	104464282	C	-	104464282	7	5	238	1	0	1	0	1	0	0	0	0	15788	855	30	0	639	0	TEX13A	23	104464282	Frame_Shift_Del	DEL	C	TCGA-B8-4146-01B-11D-1669-08		104464282	50806278	43	15347											
KLHL13	90293	hgsc.bcm.edu;ucsc.edu	37	X	117032986	117032986	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-4146-01B-11D-1669-08	TCGA-B8-4146-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	380bdba7-8a12-4136-877a-f54346d2d8a5	7f73a3eb-cc5d-415f-bbf8-11869e62daf9	-	117032986	T	-	117032986	7	5	238	1	0	1	0	1	0	0	0	0	8376	1609	56	0	118	0	KLHL13	23	117032986	Frame_Shift_Del	DEL	T	TCGA-B8-4146-01B-11D-1669-08	12568704	117032986	38237574	44	15348											
MAGI3	260425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	114184768	114184768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	114184768	G	T	114184768	3	4	239	1	0	0	0	0	1	0	0	0	9199	962	34	4	1634	4	MAGI3	1	114184768	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10		114184768	135065853	1	15349											
FLG	2312	broad.mit.edu;hgsc.bcm.edu	37	1	152280282	152280282	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	152280282	G	C	152280282	3	2	239	1	0	0	0	0	1	0	0	0	5929	1252	44	4	5109	4	FLG	1	152280282	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10	38095514	152280282	96970339	2	15350											
TP53BP2	7159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223994599	223994599	+	Silent	SNP	T	T	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	223994599	T	C	223994599	2	2	239	1	0	0	0	0	0	0	0	1	16396	1451	51	3		3	TP53BP2	1	223994599	Silent	SNP	T	TCGA-B8-4148-01A-02D-1386-10	71714317	223994599	25256022	3	15351											
DDX1	1653	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	15758358	15758358	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	15758358	G	C	15758358	3	2	239	1	0	0	0	0	1	0	0	0	4343	933	33	4	1232	4	DDX1	2	15758358	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10		15758358	227441015	4	15352											
ATP6V1B1	525	broad.mit.edu;ucsc.edu	37	2	71190307	71190307	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	71190307	C	C	71190307	3	2	239	1	0	0	0	0	1	0	0	0	1178	943	33	4	963	4	ATP6V1B1	2	71190307	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10	55431949	71190307	172009066	5	15353											
HSPD1	3329	broad.mit.edu;hgsc.bcm.edu	37	2	198362076	198362076	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	G	198362076	T	G	198362076	3	3	239	1	0	0	0	0	1	0	0	0	7435	1841	64	5	1546	5	HSPD1	2	198362076	Missense_Mutation	SNP	T	TCGA-B8-4148-01A-02D-1386-10	127171769	198362076	44837297	6	15354											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191557	10191558	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	10191558	-	T	10191557	7	5	239	1	0	1	1	0	0	0	0	0	17174	797	28	0	560	0	VHL	3	10191557	Frame_Shift_Ins	INS	-	TCGA-B8-4148-01A-02D-1386-10		10191557	187830873	7	15355											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52651357	52651357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	52651357	T	C	52651357	3	2	239	1	0	0	0	0	1	0	0	0	11498	1406	49	3	3229	3	PBRM1	3	52651357	Missense_Mutation	SNP	T	TCGA-B8-4148-01A-02D-1386-10	42459800	52651357	145371073	8	15356											
MUC4	4585	hgsc.bcm.edu	37	3	195510011	195510011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	195510011	C	T	195510011	3	4	239	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195510011	Missense_Mutation	SNP	C	TCGA-B8-4148-01A-02D-1386-10	142858654	195510011	2512419	9	15357											
CENPE	1062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	104080236	104080236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	104080236	A	C	104080236	3	2	239	1	0	0	0	0	1	0	0	0	3232	330	12	5	5685	5	CENPE	4	104080236	Missense_Mutation	SNP	A	TCGA-B8-4148-01A-02D-1386-10		104080236	87074040	10	15358											
ADAM29	11086	hgsc.bcm.edu	37	4	175899075	175899075	+	Missense_Mutation	SNP	C	C	T	rs140568401	byfrequency	TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	175899075	C	T	175899075	3	4	239	1	0	0	0	0	1	0	0	0	247	478	17	2	2401	2	ADAM29	4	175899075	Missense_Mutation	SNP	C	TCGA-B8-4148-01A-02D-1386-10	71818839	175899075	15255201	11	15359	199	3									
ADAM29	11086	hgsc.bcm.edu	37	4	175899076	175899076	+	Silent	SNP	A	A	G	rs61744599	bycluster;byfrequency	TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	G	175899076	A	G	175899076	2	3	239	1	0	0	0	0	0	0	0	1	247	146	6	3		3	ADAM29	4	175899076	Silent	SNP	A	TCGA-B8-4148-01A-02D-1386-10	1	175899076	15255200	12	15360	199	3									
ADAM29	11086	hgsc.bcm.edu	37	4	175899079	175899079	+	Silent	SNP	C	C	T	rs151310201	byfrequency	TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	175899079	C	T	175899079	2	4	239	1	0	0	0	0	0	0	0	1	247	668	24	2		2	ADAM29	4	175899079	Silent	SNP	C	TCGA-B8-4148-01A-02D-1386-10	3	175899079	15255197	13	15361	199	3									
VCAN	1462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	82815685	82815685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	82815685	G	T	82815685	3	4	239	1	0	0	0	0	1	0	0	0	17150	1339	47	4	1582	4	VCAN	5	82815685	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10		82815685	98099575	14	15362											
PCDHB3	56132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140480794	140480794	+	Silent	SNP	C	C	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	140480794	C	T	140480794	2	4	239	1	0	0	0	0	0	0	0	1	11550	535	19	1		1	PCDHB3	5	140480794	Silent	SNP	C	TCGA-B8-4148-01A-02D-1386-10	57665109	140480794	40434466	15	15363											
EDN1	1906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	12292680	12292680	+	Silent	SNP	C	C	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	12292680	C	T	12292680	2	4	239	1	0	0	0	0	0	0	0	1	4918	610	22	2		2	EDN1	6	12292680	Silent	SNP	C	TCGA-B8-4148-01A-02D-1386-10		12292680	158822387	16	15364											
COX19	90639	broad.mit.edu;ucsc.edu	37	7	1012903	1012903	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	A	1012903	A	A	1012903	3	1	239	1	0	0	0	0	1	0	0	0	3770	1490	52	5	172	5	COX19	7	1012903	Missense_Mutation	SNP	T	TCGA-B8-4148-01A-02D-1386-10		1012903	158125760	17	15365											
POTEA	340441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	43147724	43147724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	43147724	C	T	43147724	3	4	239	1	0	0	0	0	1	0	0	0	12268	623	22	2	99	2	POTEA	8	43147724	Missense_Mutation	SNP	C	TCGA-B8-4148-01A-02D-1386-10		43147724	103216298	18	15366											
SURF4	6836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136234216	136234216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	A	136234216	G	A	136234216	3	1	239	1	0	0	0	0	1	0	0	0	15417	1087	38	1	675	1	SURF4	9	136234216	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10		136234216	4979215	19	15367											
FBXO18	84893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	5951142	5951142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	A	5951142	G	A	5951142	3	1	239	1	0	0	0	0	1	0	0	0	5738	1319	46	2	1085	2	FBXO18	10	5951142	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10		5951142	129583605	20	15368											
ZEB1	6935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	31799802	31799805	+	In_Frame_Del	DEL	AAGT	AAGT	-	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	-	31799805	AAGT	-	31799802	7	5	239	1	0	1	0	1	0	0	0	0	17635	144	5	0	715	0	ZEB1	10	31799802	In_Frame_Del	DEL	AAGT	TCGA-B8-4148-01A-02D-1386-10	25848660	31799802	103734945	21	15369											
C10orf57	0	broad.mit.edu;ucsc.edu	37	10	81838462	81838462	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	81838462	C	C	81838462	3	2	239	1	0	0	0	0	1	0	0	0	1611	391	14	5	9	5	C10orf57	10	81838462	Missense_Mutation	SNP	A	TCGA-B8-4148-01A-02D-1386-10	50038660	81838462	53696285	22	15370											
STAMBPL1	57559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	90682964	90682964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	90682964	G	T	90682964	3	4	239	1	0	0	0	0	1	0	0	0	15263	1377	48	4	1332	4	STAMBPL1	10	90682964	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10	8844502	90682964	44851783	23	15371											
RELA	5970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65426222	65426222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	65426222	C	T	65426222	3	4	239	1	0	0	0	0	1	0	0	0	13229	835	29	2	1044	2	RELA	11	65426222	Missense_Mutation	SNP	C	TCGA-B8-4148-01A-02D-1386-10		65426222	69580294	24	15372											
BCL9L	283149	broad.mit.edu;ucsc.edu	37	11	118779364	118779364	+	Silent	SNP	C	T	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	118779364	T	T	118779364	2	4	239	1	0	0	0	0	0	0	0	1	1382	521	18	2		2	BCL9L	11	118779364	Silent	SNP	C	TCGA-B8-4148-01A-02D-1386-10	53353142	118779364	16227152	25	15373											
TMEM225	338661	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123753906	123753906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	A	123753906	G	A	123753906	3	1	239	1	0	0	0	0	1	0	0	0	16159	1319	46	2	64	2	TMEM225	11	123753906	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10	4974542	123753906	11252610	26	15374											
CTDSP2	10106	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	58220853	58220853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	58220853	C	T	58220853	3	4	239	1	0	0	0	0	1	0	0	0	4006	507	18	2	555	2	CTDSP2	12	58220853	Missense_Mutation	SNP	C	TCGA-B8-4148-01A-02D-1386-10		58220853	75631042	27	15375											
SBNO1	55206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123800154	123800154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	G	123800154	A	G	123800154	3	3	239	1	0	0	0	0	1	0	0	0	13875	333	12	3	1236	3	SBNO1	12	123800154	Missense_Mutation	SNP	A	TCGA-B8-4148-01A-02D-1386-10	65579301	123800154	10051741	28	15376											
FITM1	161247	broad.mit.edu	37	14	24600851	24600851	+	Missense_Mutation	SNP	G	A	A	rs139596139		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	A	24600851	A	A	24600851	3	1	239	1	0	0	0	0	1	0	0	0	5905	1261	44	2	81	2	FITM1	14	24600851	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10		24600851	82748689	29	15377											
NTRK3	4916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	88476307	88476307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	88476307	C	T	88476307	3	4	239	1	0	0	0	0	1	0	0	0	10715	884	31	1	714	1	NTRK3	15	88476307	Missense_Mutation	SNP	C	TCGA-B8-4148-01A-02D-1386-10		88476307	14055085	30	15378											
ZNF785	146540	hgsc.bcm.edu	37	16	30594709	30594718	+	Frame_Shift_Del	DEL	TTTTTGTTTT	TTTTTGTTTT	-	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	TTTTTGTTTT	TTTTTGTTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	-	30594718	TTTTTGTTTT	-	30594709	7	5	239	1	0	1	0	1	0	0	0	0	18169	1606	56	0	831	0	ZNF785	16	30594709	Frame_Shift_Del	DEL	TTTTTGTTTT	TCGA-B8-4148-01A-02D-1386-10		30594709	59760044	31	15379											
S1PR2	9294	broad.mit.edu;hgsc.bcm.edu	37	19	10334693	10334693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	A	10334693	G	A	10334693	3	1	239	1	0	0	0	0	1	0	0	0	13807	1086	38	1	176	1	S1PR2	19	10334693	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10		10334693	48794290	32	15380											
S1PR2	9294	broad.mit.edu	37	19	10335160	10335160	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	T	10335160	T	T	10335160	3	4	239	1	0	0	0	0	1	0	0	0	13807	739	26	2	643	2	S1PR2	19	10335160	Missense_Mutation	SNP	C	TCGA-B8-4148-01A-02D-1386-10	467	10335160	48793823	33	15381											
ANKRD27	84079	hgsc.bcm.edu;ucsc.edu	37	19	33149837	33149841	+	Frame_Shift_Del	DEL	CCACT	CCACT	-	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	CCACT	CCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	-	33149841	CCACT	-	33149837	7	5	239	1	0	1	0	1	0	0	0	0	655	739	26	0	3179	0	ANKRD27	19	33149837	Frame_Shift_Del	DEL	CCACT	TCGA-B8-4148-01A-02D-1386-10	22814677	33149837	25979146	34	15382											
ZNF383	163087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37733520	37733520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	37733520	G	C	37733520	3	2	239	1	0	0	0	0	1	0	0	0	17886	1319	46	4	396	4	ZNF383	19	37733520	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10	4583683	37733520	21395463	35	15383											
PCNA	5111	hgsc.bcm.edu;ucsc.edu	37	20	5098236	5098236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	5098236	A	C	5098236	3	2	239	1	0	0	0	0	1	0	0	0	11595	126	5	5	335	5	PCNA	20	5098236	Missense_Mutation	SNP	A	TCGA-B8-4148-01A-02D-1386-10		5098236	57927284	36	15384											
EFHC2	80258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	44132000	44132000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	44132000	T	C	44132000	3	2	239	1	0	0	0	0	1	0	0	0	4949	1638	57	3	1987	3	EFHC2	23	44132000	Missense_Mutation	SNP	T	TCGA-B8-4148-01A-02D-1386-10		44132000	111138560	37	15385											
GNL3L	54552	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	54577474	54577474	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	54577474	G	C	54577474	3	2	239	1	0	0	0	0	1	0	0	0	6545	1174	41	4	888	4	GNL3L	23	54577474	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10	10445474	54577474	100693086	38	15386											
RAB39B	116442	broad.mit.edu	37	X	154490260	154490260	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B8-4148-01A-02D-1386-10	TCGA-B8-4148-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fe752e2b-e694-4fa9-99d6-46d5bff9e8cf	8dd6ee40-2fae-4cac-a322-ef15761ad2c7	C	154490260	C	C	154490260	3	2	239	1	0	0	0	0	1	0	0	0	12943	1203	42	4	175	4	RAB39B	23	154490260	Missense_Mutation	SNP	G	TCGA-B8-4148-01A-02D-1386-10	99912786	154490260	780300	39	15387											
TRIM62	55223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33612870	33612870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	33612870	G	A	33612870	3	1	240	1	0	0	0	0	1	0	0	0	16549	1232	43	2	95	2	TRIM62	1	33612870	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10		33612870	215637751	1	15388											
SLC44A3	126969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	95357883	95357883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	95357883	A	C	95357883	3	2	240	1	0	0	0	0	1	0	0	0	14650	43	2	5	1721	5	SLC44A3	1	95357883	Missense_Mutation	SNP	A	TCGA-B8-4151-01A-01D-1806-10	61745013	95357883	153892738	2	15389											
DENND2D	79961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111743023	111743023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	111743023	A	T	111743023	3	4	240	1	0	0	0	0	1	0	0	0	4433	304	11	5	1404	5	DENND2D	1	111743023	Missense_Mutation	SNP	A	TCGA-B8-4151-01A-01D-1806-10	16385140	111743023	137507598	3	15390											
FLAD1	80308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154962043	154962043	+	Silent	SNP	T	T	G	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	G	154962043	T	G	154962043	2	3	240	1	0	0	0	0	0	0	0	1	5927	1596	56	5		5	FLAD1	1	154962043	Silent	SNP	T	TCGA-B8-4151-01A-01D-1806-10	43219020	154962043	94288578	4	15391											
VSIG8	391123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	159827560	159827560	+	Silent	SNP	C	C	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	159827560	C	T	159827560	2	4	240	1	0	0	0	0	0	0	0	1	17238	564	20	2		2	VSIG8	1	159827560	Silent	SNP	C	TCGA-B8-4151-01A-01D-1806-10	4865517	159827560	89423061	5	15392											
C1orf14	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	182869151	182869151	+	Silent	SNP	G	G	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	182869151	G	A	182869151	2	1	240	1	0	0	0	0	0	0	0	1	2002	1136	40	1		1	C1orf14	1	182869151	Silent	SNP	G	TCGA-B8-4151-01A-01D-1806-10	23041591	182869151	66381470	6	15393											
USH2A	7399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	216166458	216166458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	216166458	C	A	216166458	3	1	240	1	0	0	0	0	1	0	0	0	17048	826	29	4	9051	4	USH2A	1	216166458	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	33297307	216166458	33084163	7	15394											
C2orf29	55571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	101885856	101885856	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	101885856	A	C	101885856	3	2	240	1	0	0	0	0	1	0	0	0	2163	304	11	5	1540	5	C2orf29	2	101885856	Missense_Mutation	SNP	A	TCGA-B8-4151-01A-01D-1806-10		101885856	141313517	8	15395											
ACVR2A	92	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	148677842	148677842	+	Missense_Mutation	SNP	G	G	T	rs111862877	alternate_allele	TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	148677842	G	T	148677842	3	4	240	1	0	0	0	0	1	0	0	0	223	971	34	4	1036	4	ACVR2A	2	148677842	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	46791986	148677842	94521531	9	15396											
SP140	11262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	231090582	231090582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	231090582	G	A	231090582	3	1	240	1	0	0	0	0	1	0	0	0	14975	1232	43	2	25	2	SP140	2	231090582	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	82412740	231090582	12108791	10	15397											
NCL	4691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	232323070	232323070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	232323070	T	C	232323070	3	2	240	1	0	0	0	0	1	0	0	0	10233	1493	52	3	964	3	NCL	2	232323070	Missense_Mutation	SNP	T	TCGA-B8-4151-01A-01D-1806-10	1232488	232323070	10876303	11	15398											
VHL	7428	hgsc.bcm.edu	37	3	10183804	10183805	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01W-1244-10	CG	CG	CG	-	CG	CG	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	099df9a3-e2e2-4441-b88d-a83da347cbae	-	10183805	CG	-	10183804	7	5	240	1	0	1	0	1	0	0	0	0	17174	883	31	0	275	0	VHL	3	10183804	Frame_Shift_Del	DEL	CG	TCGA-B8-4151-01A-01D-1806-10		10183804	187838626	12	15399											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52436345	52436345	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	-	52436345	G	-	52436345	7	5	240	1	0	1	0	1	0	0	0	0	1311	1115	39	0	44	0	BAP1	3	52436345	Frame_Shift_Del	DEL	G	TCGA-B8-4151-01A-01D-1806-10	42252541	52436345	145586085	13	15400											
MUC4	4585	hgsc.bcm.edu	37	3	195508499	195508499	+	Missense_Mutation	SNP	C	C	T	rs62282475	by1000genomes	TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	195508499	C	T	195508499	3	4	240	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195508499	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	143072154	195508499	2513931	14	15401											
SCOC	60592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	141302257	141302257	+	Silent	SNP	A	A	G	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	G	141302257	A	G	141302257	2	3	240	1	0	0	0	0	0	0	0	1	13946	369	13	3		3	SCOC	4	141302257	Silent	SNP	A	TCGA-B8-4151-01A-01D-1806-10		141302257	49852019	15	15402											
RAPGEF2	9693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	160273849	160273849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	160273849	C	T	160273849	3	4	240	1	0	0	0	0	1	0	0	0	13057	797	28	2	3477	2	RAPGEF2	4	160273849	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	18971592	160273849	30880427	16	15403											
KLKB1	3818	broad.mit.edu	37	4	187172722	187172722	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	187172722	A	A	187172722	3	1	240	1	0	0	0	0	1	0	0	0	8419	1725	60	5	980	5	KLKB1	4	187172722	Missense_Mutation	SNP	T	TCGA-B8-4151-01A-01D-1806-10	26898873	187172722	3981554	17	15404											
TBC1D9B	23061	hgsc.bcm.edu;ucsc.edu	37	5	179299981	179299981	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	-	179299981	T	-	179299981	7	5	240	1	0	1	0	1	0	0	0	0	15640	1580	55	0	1462	0	TBC1D9B	5	179299981	Frame_Shift_Del	DEL	T	TCGA-B8-4151-01A-01D-1806-10		179299981	1615279	18	15405											
C6orf62	81688	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	24706388	24706388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	24706388	G	T	24706388	3	4	240	1	0	0	0	0	1	0	0	0	2370	1000	35	4	26	4	C6orf62	6	24706388	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10		24706388	146408679	19	15406											
ZNF12	7559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	6731954	6731954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	-	6731954	A	-	6731954	7	5	240	1	0	1	0	1	0	0	0	0	17730	362	13	0	1478	0	ZNF12	7	6731954	Frame_Shift_Del	DEL	A	TCGA-B8-4151-01A-01D-1806-10		6731954	152406709	20	15407											
EMID2	136227	broad.mit.edu;hgsc.bcm.edu	37	7	101063346	101063346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	101063346	T	A	101063346	3	1	240	1	0	0	0	0	1	0	0	0	5094	1580	55	5	253	5	EMID2	7	101063346	Missense_Mutation	SNP	T	TCGA-B8-4151-01A-01D-1806-10	94331392	101063346	58075317	21	15408											
TRIM55	84675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67047249	67047249	+	Silent	SNP	C	C	A	rs151067178	alternate_allele	TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	67047249	C	A	67047249	2	1	240	1	0	0	0	0	0	0	0	1	16541	581	21	4		4	TRIM55	8	67047249	Silent	SNP	C	TCGA-B8-4151-01A-01D-1806-10		67047249	79316773	22	15409											
PABPC1	26986	broad.mit.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	101724606	A	A	101724606	3	1	240	1	0	0	0	0	1	0	0	0	11370	1377	48	2	986	2	PABPC1	8	101724606	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	34677357	101724606	44639416	23	15410											
REXO4	57109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136279971	136279971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	136279971	C	T	136279971	3	4	240	1	0	0	0	0	1	0	0	0	13256	681	24	2	910	2	REXO4	9	136279971	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10		136279971	4933460	24	15411											
MRVI1	10335	broad.mit.edu;ucsc.edu	37	11	10624763	10624763	+	Silent	SNP	C	G	G	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	G	10624763	G	G	10624763	2	3	240	1	0	0	0	0	0	0	0	1	9860	610	22	4		4	MRVI1	11	10624763	Silent	SNP	C	TCGA-B8-4151-01A-01D-1806-10		10624763	124381753	25	15412											
C11orf94	143678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	45928173	45928173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	45928173	G	A	45928173	3	1	240	1	0	0	0	0	1	0	0	0	1675	1087	38	1	56	1	C11orf94	11	45928173	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	35303410	45928173	89078343	26	15413											
SSSCA1	10534	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65338194	65338194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	65338194	C	T	65338194	3	4	240	1	0	0	0	0	1	0	0	0	15207	652	23	1	145	1	SSSCA1	11	65338194	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	19410021	65338194	69668322	27	15414											
NPAS4	266743	hgsc.bcm.edu	37	11	66189604	66189604	+	Silent	SNP	G	G	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	66189604	G	A	66189604	2	1	240	1	0	0	0	0	0	0	0	1	10572	1103	39	1		1	NPAS4	11	66189604	Silent	SNP	G	TCGA-B8-4151-01A-01D-1806-10	851410	66189604	68816912	28	15415											
PGR	5241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	100933375	100933375	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	G	100933375	C	G	100933375	3	3	240	1	0	0	0	0	1	0	0	0	11812	913	32	4	806	4	PGR	11	100933375	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	34743771	100933375	34073141	29	15416											
RAD51AP1	10635	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	4668106	4668106	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	4668106	T	A	4668106	3	1	240	1	0	0	0	0	1	0	0	0	12999	1606	56	5	1044	5	RAD51AP1	12	4668106	Missense_Mutation	SNP	T	TCGA-B8-4151-01A-01D-1806-10		4668106	129183789	30	15417											
GDF3	9573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7842617	7842617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	7842617	G	T	7842617	3	4	240	1	0	0	0	0	1	0	0	0	6322	1319	46	4	146	4	GDF3	12	7842617	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	3174511	7842617	126009278	31	15418			1	30		2	2	49	N	T_G	9.612952e-05
GDF3	9573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7842665	7842665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	7842665	T	C	7842665	3	2	240	1	0	0	0	0	1	0	0	0	6322	1667	58	3	194	3	GDF3	12	7842665	Missense_Mutation	SNP	T	TCGA-B8-4151-01A-01D-1806-10	48	7842665	126009230	32	15419			1	30		2	2	49	N	T_G	9.612952e-05
KLRC1	3821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10603588	10603588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	10603588	G	T	10603588	3	4	240	1	0	0	0	0	1	0	0	0	8422	1368	48	4	557	4	KLRC1	12	10603588	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	2760923	10603588	123248307	33	15420											
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49427164	49427164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	49427164	C	T	49427164	3	4	240	1	0	0	0	0	1	0	0	0	9628	739	26	2	5353	2	MLL2	12	49427164	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	38823576	49427164	84424731	34	15421											
KRT78	196374	hgsc.bcm.edu;ucsc.edu	37	12	53242598	53242615	+	In_Frame_Del	DEL	CCTGCTGCTGAAGCCGCC	CCTGCTGCTGAAGCCGCC	-	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	CCTGCTGCTGAAGCCGCC	CCTGCTGCTGAAGCCGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	-	53242615	CCTGCTGCTGAAGCCGCC	-	53242598	7	5	240	1	0	1	0	1	0	0	0	0	8498	854	30	0	1481	0	KRT78	12	53242598	In_Frame_Del	DEL	CCTGCTGCTGAAGCCGCC	TCGA-B8-4151-01A-01D-1806-10	3815434	53242598	80609297	35	15422											
ATP5G2	517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54063038	54063038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	54063038	C	A	54063038	3	1	240	1	0	0	0	0	1	0	0	0	1154	884	31	4	228	4	ATP5G2	12	54063038	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	820440	54063038	79788857	36	15423											
TAC3	6866	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57409489	57409489	+	Silent	SNP	A	A	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	57409489	A	T	57409489	2	4	240	1	0	0	0	0	0	0	0	1	15511	233	9	5		5	TAC3	12	57409489	Silent	SNP	A	TCGA-B8-4151-01A-01D-1806-10	3346451	57409489	76442406	37	15424											
PLEKHG3	26030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	65204095	65204095	+	Splice_Site	SNP	T	T	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	65204095	T	C	65204095	5	2	240	1	0	0	0	0	0	0	1	0	12077	1652	57	3	1280	3	PLEKHG3	14	65204095	Splice_Site	SNP	T	TCGA-B8-4151-01A-01D-1806-10		65204095	42145445	38	15425											
MAP1A	4130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43821515	43821515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	43821515	C	A	43821515	3	1	240	1	0	0	0	0	1	0	0	0	9234	594	21	4	7846	4	MAP1A	15	43821515	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10		43821515	58709877	39	15426											
RUNDC2A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	12136831	12136831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	12136831	G	T	12136831	3	4	240	1	0	0	0	0	1	0	0	0	13756	1087	38	4	343	4	RUNDC2A	16	12136831	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10		12136831	78217922	40	15427											
SALL1	6299	broad.mit.edu;ucsc.edu	37	16	51173118	51173118	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	51173118	C	C	51173118	3	2	240	1	0	0	0	0	1	0	0	0	13823	10	1	5	967	5	SALL1	16	51173118	Missense_Mutation	SNP	A	TCGA-B8-4151-01A-01D-1806-10	39036287	51173118	39181635	41	15428	200	2									
SALL1	6299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	51173119	51173119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	51173119	A	T	51173119	3	4	240	1	0	0	0	0	1	0	0	0	13823	101	4	5	968	5	SALL1	16	51173119	Missense_Mutation	SNP	A	TCGA-B8-4151-01A-01D-1806-10	1	51173119	39181634	42	15429	200	2									
CTCF	10664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67660544	67660544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	67660544	C	A	67660544	3	1	240	1	0	0	0	0	1	0	0	0	4002	681	24	4	1466	4	CTCF	16	67660544	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	16487425	67660544	22694209	43	15430											
GEMIN4	50628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	649272	649272	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	649272	G	C	649272	3	2	240	1	0	0	0	0	1	0	0	0	6337	933	33	4	1169	4	GEMIN4	17	649272	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10		649272	80545938	44	15431											
LHX1	3975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	35297675	35297675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	35297675	A	C	35297675	3	2	240	1	0	0	0	0	1	0	0	0	8777	246	9	5	265	5	LHX1	17	35297675	Missense_Mutation	SNP	A	TCGA-B8-4151-01A-01D-1806-10	34648403	35297675	45897535	45	15432											
CWC25	54883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36963045	36963045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	36963045	C	T	36963045	3	4	240	1	0	0	0	0	1	0	0	0	4071	681	24	2	418	2	CWC25	17	36963045	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	1665370	36963045	44232165	46	15433											
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190953	39190953	+	Missense_Mutation	SNP	G	G	C	rs78298475		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	39190953	G	C	39190953	3	2	240	1	0	0	0	0	1	0	0	0	8510	1357	47	4	386	4	KRTAP1-3	17	39190953	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	2227908	39190953	42004257	47	15434	201	2									
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190954	39190954	+	Silent	SNP	G	G	A	rs75033421		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	39190954	G	A	39190954	2	1	240	1	0	0	0	0	0	0	0	1	8510	1195	42	2		2	KRTAP1-3	17	39190954	Silent	SNP	G	TCGA-B8-4151-01A-01D-1806-10	1	39190954	42004256	48	15435	201	2									
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197538	39197538	+	Missense_Mutation	SNP	G	G	T	rs146863522	by1000genomes	TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	39197538	G	T	39197538	3	4	240	1	0	0	0	0	1	0	0	0	8509	1145	40	4	425	4	KRTAP1-1	17	39197538	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	6584	39197538	41997672	49	15436											
PCTP	58488	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	53853436	53853436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	53853436	G	C	53853436	3	2	240	1	0	0	0	0	1	0	0	0	11614	1377	48	4	642	4	PCTP	17	53853436	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	14655898	53853436	27341774	50	15437											
APOH	350	broad.mit.edu;ucsc.edu	37	17	64213023	64213023	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	G	64213023	G	G	64213023	3	3	240	1	0	0	0	0	1	0	0	0	804	1725	60	5	382	5	APOH	17	64213023	Missense_Mutation	SNP	T	TCGA-B8-4151-01A-01D-1806-10	10359587	64213023	16982187	51	15438											
MRO	83876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	48345981	48345981	+	Silent	SNP	T	T	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	48345981	T	C	48345981	2	2	240	1	0	0	0	0	0	0	0	1	9779	1451	51	3		3	MRO	18	48345981	Silent	SNP	T	TCGA-B8-4151-01A-01D-1806-10		48345981	29731267	52	15439											
ZNF208	7757	broad.mit.edu	37	19	22154068	22154068	+	Silent	SNP	T	C	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	22154068	C	C	22154068	2	2	240	1	0	0	0	0	0	0	0	1	17778	1606	56	3		3	ZNF208	19	22154068	Silent	SNP	T	TCGA-B8-4151-01A-01D-1806-10		22154068	36974915	53	15440											
DMKN	93099	hgsc.bcm.edu	37	19	36002423	36002423	+	Missense_Mutation	SNP	C	C	T	rs145440628		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	36002423	C	T	36002423	3	4	240	1	0	0	0	0	1	0	0	0	4584	594	21	2	987	2	DMKN	19	36002423	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	13848355	36002423	23126560	54	15441											
PAK4	10298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39668357	39668357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	39668357	G	A	39668357	3	1	240	1	0	0	0	0	1	0	0	0	11410	1174	41	2	1554	2	PAK4	19	39668357	Missense_Mutation	SNP	G	TCGA-B8-4151-01A-01D-1806-10	3665934	39668357	19460626	55	15442											
ZNF841	284371	broad.mit.edu;hgsc.bcm.edu	37	19	52568835	52568835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	T	52568835	C	T	52568835	3	4	240	1	0	0	0	0	1	0	0	0	18201	478	17	2	478	2	ZNF841	19	52568835	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10	12900478	52568835	6560148	56	15443											
LIME1	54923	broad.mit.edu	37	20	62370185	62370185	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	G	62370185	G	G	62370185	3	3	240	1	0	0	0	0	1	0	0	0	8807	275	10	3	838	3	LIME1	20	62370185	Missense_Mutation	SNP	A	TCGA-B8-4151-01A-01D-1806-10		62370185	655335	57	15444											
TUBGCP6	85378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50657163	50657163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	50657163	T	C	50657163	3	2	240	1	0	0	0	0	1	0	0	0	16782	1435	50	3	689	3	TUBGCP6	22	50657163	Missense_Mutation	SNP	T	TCGA-B8-4151-01A-01D-1806-10		50657163	647403	58	15445											
P2RY8	286530	broad.mit.edu	37	X	1585028	1585028	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	1585028	A	A	1585028	3	1	240	1	0	0	0	0	1	0	0	0	11362	739	26	4	659	4	P2RY8	23	1585028	Missense_Mutation	SNP	C	TCGA-B8-4151-01A-01D-1806-10		1585028	153685532	59	15446											
DGKK	139189	hgsc.bcm.edu	37	X	50213423	50213423	+	Silent	SNP	T	T	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	50213423	T	A	50213423	2	1	240	1	0	0	0	0	0	0	0	1	4474	1567	55	5		5	DGKK	23	50213423	Silent	SNP	T	TCGA-B8-4151-01A-01D-1806-10	48628395	50213423	105057137	60	15447											
ATRX	546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	76890185	76890185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	C	76890185	A	C	76890185	3	2	240	1	0	0	0	0	1	0	0	0	1208	14	1	5	2845	5	ATRX	23	76890185	Missense_Mutation	SNP	A	TCGA-B8-4151-01A-01D-1806-10	26676762	76890185	78380375	61	15448											
ZBTB33	10009	hgsc.bcm.edu	37	X	119387833	119387834	+	In_Frame_Ins	INS	-	-	TGA	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	TGA	119387834	-	TGA	119387833	7	5	240	1	0	1	1	0	0	0	0	0	17548	913	32	0	565	0	ZBTB33	23	119387833	In_Frame_Ins	INS	-	TCGA-B8-4151-01A-01D-1806-10	42497648	119387833	35882727	62	15449											
MAGEC1	9947	hgsc.bcm.edu	37	X	140994055	140994068	+	Frame_Shift_Del	DEL	GAGAGAACTCAGAG	GAGAGAACTCAGAG	-	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	GAGAGAACTCAGAG	GAGAGAACTCAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	-	140994068	GAGAGAACTCAGAG	-	140994055	7	5	240	1	0	1	0	1	0	0	0	0	9187	1291	45	0	871	0	MAGEC1	23	140994055	Frame_Shift_Del	DEL	GAGAGAACTCAGAG	TCGA-B8-4151-01A-01D-1806-10	21606222	140994055	14276505	63	15450											
SLC6A8	6535	broad.mit.edu;hgsc.bcm.edu	37	X	152956789	152956789	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4151-01A-01D-1806-10	TCGA-B8-4151-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f847558-8bc7-49b0-899d-2a7b8f0e3d1a	41213977-65aa-487a-9d3e-c5cfc7c0ceed	A	152956789	T	A	152956789	3	1	240	1	0	0	0	0	1	0	0	0	14703	1783	62	5	435	5	SLC6A8	23	152956789	Missense_Mutation	SNP	T	TCGA-B8-4151-01A-01D-1806-10	11962734	152956789	2313771	64	15451											
AJAP1	55966	hgsc.bcm.edu	37	1	4772582	4772583	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	CCA	4772583	-	CCA	4772582	7	5	241	1	0	1	1	0	0	0	0	0	438	1087	38	0	658	0	AJAP1	1	4772582	In_Frame_Ins	INS	-	TCGA-B8-4153-01B-11D-1669-08		4772582	244478039	1	15452											
SLC9A1	6548	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	27440565	27440565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	G	27440565	T	G	27440565	3	3	241	1	0	0	0	0	1	0	0	0	14722	1464	51	5	1926	5	SLC9A1	1	27440565	Missense_Mutation	SNP	T	TCGA-B8-4153-01B-11D-1669-08	22667983	27440565	221810056	2	15453											
KIAA0754	643314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39877427	39877427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	39877427	C	T	39877427	3	4	241	1	0	0	0	0	1	0	0	0	8199	710	25	2	1492	2	KIAA0754	1	39877427	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	12436862	39877427	209373194	3	15454											
AKNAD1	254268	broad.mit.edu;hgsc.bcm.edu	37	1	109369917	109369917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	109369917	T	A	109369917	3	1	241	1	0	0	0	0	1	0	0	0	464	1841	64	5	688	5	AKNAD1	1	109369917	Missense_Mutation	SNP	T	TCGA-B8-4153-01B-11D-1669-08	69492490	109369917	139880704	4	15455											
PHGDH	26227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	120254648	120254648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	120254648	G	A	120254648	3	1	241	1	0	0	0	0	1	0	0	0	11848	1348	47	2	5	2	PHGDH	1	120254648	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08	10884731	120254648	128995973	5	15456											
MTMR11	10903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	149903193	149903193	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	C	149903193	G	C	149903193	3	2	241	1	0	0	0	0	1	0	0	0	9947	1174	41	4	939	4	MTMR11	1	149903193	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08	29648545	149903193	99347428	6	15457											
SLC39A1	27173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153934708	153934708	+	Silent	SNP	G	G	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	153934708	G	T	153934708	2	4	241	1	0	0	0	0	0	0	0	1	14625	987	35	4		4	SLC39A1	1	153934708	Silent	SNP	G	TCGA-B8-4153-01B-11D-1669-08	4031515	153934708	95315913	7	15458											
RPS27	6232	broad.mit.edu	37	1	153963625	153963625	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	C	153963625	C	C	153963625	3	2	241	1	0	0	0	0	1	0	0	0	13651	304	11	5	47	5	RPS27	1	153963625	Missense_Mutation	SNP	A	TCGA-B8-4153-01B-11D-1669-08	28917	153963625	95286996	8	15459											
GBA	2629	broad.mit.edu	37	1	155207294	155207294	+	Silent	SNP	C	T	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	155207294	T	T	155207294	2	4	241	1	0	0	0	0	0	0	0	1	6273	465	17	2		2	GBA	1	155207294	Silent	SNP	C	TCGA-B8-4153-01B-11D-1669-08	1243669	155207294	94043327	9	15460											
LAMC1	3915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183102612	183102612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	183102612	G	A	183102612	3	1	241	1	0	0	0	0	1	0	0	0	8621	1000	35	2	3862	2	LAMC1	1	183102612	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08	27895318	183102612	66148009	10	15461											
MERTK	10461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	112767558	112767559	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	112767559	-	A	112767558	7	5	241	1	0	1	1	0	0	0	0	0	9486	594	21	0	2052	0	MERTK	2	112767558	Frame_Shift_Ins	INS	-	TCGA-B8-4153-01B-11D-1669-08		112767558	130431815	11	15462											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188262	10188262	+	Missense_Mutation	SNP	A	A	T	rs119103278	alternate_allele	TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	10188262	A	T	10188262	3	4	241	1	0	0	0	0	1	0	0	0	17174	446	16	5	411	5	VHL	3	10188262	Missense_Mutation	SNP	A	TCGA-B8-4153-01B-11D-1669-08		10188262	187834168	12	15463											
PBRM1	55193	broad.mit.edu	37	3	52620362	52620362	+	Intron	SNP	T	C	C	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	C	52620362	C	C	52620362	1	2	241	0	1	0	0	0	0	0	0	0	11498	1827	63	3		3	PBRM1	3	52620362	Intron	SNP	T	TCGA-B8-4153-01B-11D-1669-08	42432100	52620362	145402068	13	15464											
ZNF148	7707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	124951653	124951653	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	-	124951653	A	-	124951653	7	5	241	1	0	1	0	1	0	0	0	0	17746	330	12	0	471	0	ZNF148	3	124951653	Frame_Shift_Del	DEL	A	TCGA-B8-4153-01B-11D-1669-08	72331291	124951653	73070777	14	15465											
CEP135	9662	broad.mit.edu;hgsc.bcm.edu	37	4	56884018	56884018	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	56884018	G	T	56884018	4	4	241	1	0	0	0	0	0	1	0	0	3249	1291	45	4	3089	4	CEP135	4	56884018	Nonsense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		56884018	134270258	15	15466											
TET2	54790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	106156445	106156445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	106156445	T	A	106156445	3	1	241	1	0	0	0	0	1	0	0	0	15782	1696	59	5	1348	5	TET2	4	106156445	Missense_Mutation	SNP	T	TCGA-B8-4153-01B-11D-1669-08	49272427	106156445	84997831	16	15467											
RPS18	6222	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33240470	33240470	+	Silent	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	33240470	G	A	33240470	2	1	241	1	0	0	0	0	0	0	0	1	13641	1190	42	2		2	RPS18	6	33240470	Silent	SNP	G	TCGA-B8-4153-01B-11D-1669-08		33240470	137874597	17	15468											
GRM4	2914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	34100944	34100944	+	Silent	SNP	G	G	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	34100944	G	T	34100944	2	4	241	1	0	0	0	0	0	0	0	1	6806	1335	47	4		4	GRM4	6	34100944	Silent	SNP	G	TCGA-B8-4153-01B-11D-1669-08	860474	34100944	137014123	18	15469											
UNC5CL	222643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	41002579	41002579	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	41002579	A	T	41002579	3	4	241	1	0	0	0	0	1	0	0	0	17006	72	3	5	1353	5	UNC5CL	6	41002579	Missense_Mutation	SNP	A	TCGA-B8-4153-01B-11D-1669-08	6901635	41002579	130112488	19	15470											
TREM2	54209	hgsc.bcm.edu;ucsc.edu	37	6	41126749	41126749	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	-	41126749	C	-	41126749	7	5	241	1	0	1	0	1	0	0	0	0	16483	739	26	0	162	0	TREM2	6	41126749	Frame_Shift_Del	DEL	C	TCGA-B8-4153-01B-11D-1669-08	124170	41126749	129988318	20	15471											
ABCC10	89845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43402469	43402469	+	Silent	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	43402469	G	A	43402469	2	1	241	1	0	0	0	0	0	0	0	1	50	1219	43	2		2	ABCC10	6	43402469	Silent	SNP	G	TCGA-B8-4153-01B-11D-1669-08	2275720	43402469	127712598	21	15472											
ARID1B	57492	broad.mit.edu;hgsc.bcm.edu	37	6	157520041	157520041	+	Silent	SNP	G	G	C	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	C	157520041	G	C	157520041	2	2	241	1	0	0	0	0	0	0	0	1	914	1130	39	4		4	ARID1B	6	157520041	Silent	SNP	G	TCGA-B8-4153-01B-11D-1669-08	114117572	157520041	13595026	22	15473											
LPA	4018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160969596	160969596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	G	160969596	A	G	160969596	3	3	241	1	0	0	0	0	1	0	0	0	8910	188	7	3	1089	3	LPA	6	160969596	Missense_Mutation	SNP	A	TCGA-B8-4153-01B-11D-1669-08	3449555	160969596	10145471	23	15474											
VPS37A	137492	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17137538	17137538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	17137538	G	T	17137538	3	4	241	1	0	0	0	0	1	0	0	0	17217	1391	48	4	741	4	VPS37A	8	17137538	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		17137538	129226484	24	15475											
ASAP1	50807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	131073178	131073178	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	G	131073178	C	G	131073178	3	3	241	1	0	0	0	0	1	0	0	0	1010	739	26	4	562	4	ASAP1	8	131073178	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	113935640	131073178	15290844	25	15476	202	2									
ASAP1	50807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	131073179	131073179	+	Silent	SNP	C	C	G	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	G	131073179	C	G	131073179	2	3	241	1	0	0	0	0	0	0	0	1	1010	581	21	4		4	ASAP1	8	131073179	Silent	SNP	C	TCGA-B8-4153-01B-11D-1669-08	1	131073179	15290843	26	15477	202	2									
MTAP	4507	broad.mit.edu;ucsc.edu	37	9	21837965	21837965	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	C	21837965	C	C	21837965	3	2	241	1	0	0	0	0	1	0	0	0	9918	1696	59	3	424	3	MTAP	9	21837965	Missense_Mutation	SNP	T	TCGA-B8-4153-01B-11D-1669-08		21837965	119375466	27	15478											
ALDH1A1	216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	75540461	75540461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	G	75540461	A	G	75540461	3	3	241	1	0	0	0	0	1	0	0	0	490	43	2	3	965	3	ALDH1A1	9	75540461	Missense_Mutation	SNP	A	TCGA-B8-4153-01B-11D-1669-08	53702496	75540461	65672970	28	15479											
OMD	4958	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95179200	95179200	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	95179200	A	T	95179200	3	4	241	1	0	0	0	0	1	0	0	0	10872	420	15	5	632	5	OMD	9	95179200	Missense_Mutation	SNP	A	TCGA-B8-4153-01B-11D-1669-08	19638739	95179200	46034231	29	15480											
PTCH1	5727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	98220440	98220440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	98220440	C	T	98220440	3	4	241	1	0	0	0	0	1	0	0	0	12740	565	20	2	1344	2	PTCH1	9	98220440	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	3041240	98220440	42992991	30	15481											
CACNA1B	774	broad.mit.edu;hgsc.bcm.edu	37	9	140904474	140904474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	140904474	A	T	140904474	3	4	241	1	0	0	0	0	1	0	0	0	2541	101	4	5	2171	5	CACNA1B	9	140904474	Missense_Mutation	SNP	A	TCGA-B8-4153-01B-11D-1669-08	42684034	140904474	308957	31	15482											
HERC4	26091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	69797906	69797908	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	-	69797908	TCT	-	69797906	7	5	241	1	0	1	0	1	0	0	0	0	7067	1435	50	0	2854	0	HERC4	10	69797906	In_Frame_Del	DEL	TCT	TCGA-B8-4153-01B-11D-1669-08		69797906	65736841	32	15483											
SAMD8	142891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	76928376	76928376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	76928376	C	T	76928376	3	4	241	1	0	0	0	0	1	0	0	0	13838	855	30	2	762	2	SAMD8	10	76928376	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	7130470	76928376	58606371	33	15484											
PDCD11	22984	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	105166476	105166476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	105166476	G	A	105166476	3	1	241	1	0	0	0	0	1	0	0	0	11624	1319	46	2	821	2	PDCD11	10	105166476	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08	28238100	105166476	30368271	34	15485											
MUC5B	727897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1258216	1258216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	1258216	G	A	1258216	3	1	241	1	0	0	0	0	1	0	0	0	9986	1145	40	1	3226	1	MUC5B	11	1258216	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		1258216	133748300	35	15486											
PRB2	653247	broad.mit.edu	37	12	11546588	11546588	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	11546588	T	T	11546588	3	4	241	1	0	0	0	0	1	0	0	0	12453	1261	44	4	830	4	PRB2	12	11546588	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		11546588	122305307	36	15487											
BICD1	636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32369298	32369298	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	32369298	G	T	32369298	4	4	241	1	0	0	0	0	0	1	0	0	1428	1175	41	4	337	4	BICD1	12	32369298	Nonsense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08	20822710	32369298	101482597	37	15488											
GALNT6	11226	hgsc.bcm.edu;ucsc.edu	37	12	51751134	51751134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	C	51751134	T	C	51751134	3	2	241	1	0	0	0	0	1	0	0	0	6224	1594	55	3	279	3	GALNT6	12	51751134	Missense_Mutation	SNP	T	TCGA-B8-4153-01B-11D-1669-08	19381836	51751134	82100761	38	15489											
ORMDL2	29095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56213245	56213245	+	Silent	SNP	C	C	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	56213245	C	T	56213245	2	4	241	1	0	0	0	0	0	0	0	1	11277	610	22	2		2	ORMDL2	12	56213245	Silent	SNP	C	TCGA-B8-4153-01B-11D-1669-08	4462111	56213245	77638650	39	15490											
PTPRB	5787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	70983898	70983898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	C	70983898	A	C	70983898	3	2	241	1	0	0	0	0	1	0	0	0	12809	214	8	5	4859	5	PTPRB	12	70983898	Missense_Mutation	SNP	A	TCGA-B8-4153-01B-11D-1669-08	14770653	70983898	62867997	40	15491											
FGD6	55785	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	95546763	95546763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	95546763	C	A	95546763	3	1	241	1	0	0	0	0	1	0	0	0	5844	913	32	4	1771	4	FGD6	12	95546763	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	24562865	95546763	38305132	41	15492											
DNAJC3	5611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	96438228	96438228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	96438228	G	A	96438228	3	1	241	1	0	0	0	0	1	0	0	0	4649	1291	45	2	1149	2	DNAJC3	13	96438228	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		96438228	18731650	42	15493											
CMA1	1215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24975760	24975760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	C	24975760	G	C	24975760	3	2	241	1	0	0	0	0	1	0	0	0	3576	1377	48	4	495	4	CMA1	14	24975760	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		24975760	82373780	43	15494											
SCFD1	23256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	31122776	31122776	+	Silent	SNP	A	A	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	31122776	A	T	31122776	2	4	241	1	0	0	0	0	0	0	0	1	13902	204	8	5		5	SCFD1	14	31122776	Silent	SNP	A	TCGA-B8-4153-01B-11D-1669-08	6147016	31122776	76226764	44	15495											
MAN2C1	4123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75654746	75654746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	75654746	G	A	75654746	3	1	241	1	0	0	0	0	1	0	0	0	9225	1116	39	1	2252	1	MAN2C1	15	75654746	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		75654746	26876646	45	15496											
SALL1	6299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	51171323	51171323	+	Silent	SNP	T	T	C	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	C	51171323	T	C	51171323	2	2	241	1	0	0	0	0	0	0	0	1	13823	1567	55	3		3	SALL1	16	51171323	Silent	SNP	T	TCGA-B8-4153-01B-11D-1669-08		51171323	39183430	46	15497											
CHD9	80205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	53320220	53320220	+	Silent	SNP	T	T	G	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	G	53320220	T	G	53320220	2	3	241	1	0	0	0	0	0	0	0	1	3334	1799	63	5		5	CHD9	16	53320220	Silent	SNP	T	TCGA-B8-4153-01B-11D-1669-08	2148897	53320220	37034533	47	15498											
CBFA2T3	863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	88958664	88958664	+	Silent	SNP	C	C	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	88958664	C	T	88958664	2	4	241	1	0	0	0	0	0	0	0	1	2700	697	25	2		2	CBFA2T3	16	88958664	Silent	SNP	C	TCGA-B8-4153-01B-11D-1669-08	35638444	88958664	1396089	48	15499											
MAP3K3	4215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61762880	61762880	+	Silent	SNP	C	C	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	61762880	C	T	61762880	2	4	241	1	0	0	0	0	0	0	0	1	9258	796	28	2		2	MAP3K3	17	61762880	Silent	SNP	C	TCGA-B8-4153-01B-11D-1669-08		61762880	19432330	49	15500											
MC4R	4160	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	58039328	58039328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	58039328	G	T	58039328	3	4	241	1	0	0	0	0	1	0	0	0	9373	962	34	4	747	4	MC4R	18	58039328	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		58039328	20037920	50	15501											
RTTN	25914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	67872495	67872495	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	67872495	C	A	67872495	4	1	241	1	0	0	0	0	0	1	0	0	13750	835	29	4	6784	4	RTTN	18	67872495	Nonsense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	9833167	67872495	10204753	51	15502											
CLEC4M	10332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7833849	7833849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	7833849	C	T	7833849	3	4	241	1	0	0	0	0	1	0	0	0	3520	623	22	2	1222	2	CLEC4M	19	7833849	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08		7833849	51295134	52	15503											
AKAP8L	26993	hgsc.bcm.edu;ucsc.edu	37	19	15511126	15511126	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	-	15511126	C	-	15511126	7	5	241	1	0	1	0	1	0	0	0	0	458	739	26	0	940	0	AKAP8L	19	15511126	Frame_Shift_Del	DEL	C	TCGA-B8-4153-01B-11D-1669-08	7677277	15511126	43617857	53	15504											
WDR62	284403	broad.mit.edu;hgsc.bcm.edu	37	19	36574074	36574074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	36574074	G	A	36574074	3	1	241	1	0	0	0	0	1	0	0	0	17325	1232	43	2	1523	2	WDR62	19	36574074	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08	21062948	36574074	22554909	54	15505											
MAP3K10	4294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40698354	40698354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	40698354	C	A	40698354	3	1	241	1	0	0	0	0	1	0	0	0	9251	768	27	4	418	4	MAP3K10	19	40698354	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	4124280	40698354	18430629	55	15506											
CYP2A13	1553	broad.mit.edu;hgsc.bcm.edu	37	19	41594486	41594486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	G	41594486	C	G	41594486	3	3	241	1	0	0	0	0	1	0	0	0	4163	623	22	4	112	4	CYP2A13	19	41594486	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	896132	41594486	17534497	56	15507											
AXL	558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41763495	41763495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	41763495	G	A	41763495	3	1	241	1	0	0	0	0	1	0	0	0	1238	1174	41	2	2368	2	AXL	19	41763495	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08	169009	41763495	17365488	57	15508											
ALDH16A1	126133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49963012	49963012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	49963012	G	A	49963012	3	1	241	1	0	0	0	0	1	0	0	0	488	942	33	2	420	2	ALDH16A1	19	49963012	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08	8199517	49963012	9165971	58	15509											
ETFB	2109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51848472	51848472	+	Missense_Mutation	SNP	C	C	T	rs145173884		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	51848472	C	T	51848472	3	4	241	1	0	0	0	0	1	0	0	0	5272	652	23	1	10	1	ETFB	19	51848472	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	1885460	51848472	7280511	59	15510											
TSEN34	79042	hgsc.bcm.edu;ucsc.edu	37	19	54695606	54695607	+	In_Frame_Ins	INS	-	-	CTT	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	CTT	54695607	-	CTT	54695606	7	5	241	1	0	1	1	0	0	0	0	0	16625	971	34	0	284	0	TSEN34	19	54695606	In_Frame_Ins	INS	-	TCGA-B8-4153-01B-11D-1669-08	2847134	54695606	4433377	60	15511											
KIR3DP1	548594	broad.mit.edu	37	19	55297923	55297923	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	55297923	T	T	55297923	3	4	241	1	0	0	0	0	1	0	0	0	8330	1174	41	4	89	4	KIR3DP1	19	55297923	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08	602317	55297923	3831060	61	15512											
CHGB	1114	broad.mit.edu	37	20	5903113	5903113	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	T	5903113	T	T	5903113	3	4	241	1	0	0	0	0	1	0	0	0	3341	1232	43	4	337	4	CHGB	20	5903113	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		5903113	57122407	62	15513											
C20orf132	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	35772198	35772198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	35772198	C	A	35772198	3	1	241	1	0	0	0	0	1	0	0	0	2088	825	29	4	1939	4	C20orf132	20	35772198	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	29869085	35772198	27253322	63	15514											
MC3R	4159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	54824503	54824503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	54824503	C	A	54824503	3	1	241	1	0	0	0	0	1	0	0	0	9372	681	24	4	606	4	MC3R	20	54824503	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08	19052305	54824503	8201017	64	15515											
LAMA5	3911	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	60904899	60904899	+	Silent	SNP	C	C	G	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	G	60904899	C	G	60904899	2	3	241	1	0	0	0	0	0	0	0	1	8616	697	25	4		4	LAMA5	20	60904899	Silent	SNP	C	TCGA-B8-4153-01B-11D-1669-08	6080396	60904899	2120621	65	15516											
ADAMTS5	11096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	28338273	28338273	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	-	28338273	A	-	28338273	7	5	241	1	0	1	0	1	0	0	0	0	269	127	5	0	2386	0	ADAMTS5	21	28338273	Frame_Shift_Del	DEL	A	TCGA-B8-4153-01B-11D-1669-08		28338273	19791622	66	15517											
NF2	4771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30074218	30074218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	A	30074218	G	A	30074218	3	1	241	1	0	0	0	0	1	0	0	0	10364	1290	45	2	1534	2	NF2	22	30074218	Missense_Mutation	SNP	G	TCGA-B8-4153-01B-11D-1669-08		30074218	21230348	67	15518											
CA5B	11238	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	15768234	15768234	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4153-01B-11D-1669-08	TCGA-B8-4153-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a66078d8-a6b2-4dc4-bfa3-def5a2e4504f	9f514938-c1ca-49d9-97ab-79cf8157f0a8	G	15768234	C	G	15768234	3	3	241	1	0	0	0	0	1	0	0	0	2522	739	26	4	90	4	CA5B	23	15768234	Missense_Mutation	SNP	C	TCGA-B8-4153-01B-11D-1669-08		15768234	139502326	68	15519											
PHC2	1912	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33796958	33796958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	33796958	C	T	33796958	3	4	242	1	0	0	0	0	1	0	0	0	11824	478	17	2	598	2	PHC2	1	33796958	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10		33796958	215453663	1	15520											
TCHHL1	126637	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152060504	152060504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	152060504	C	T	152060504	3	4	242	1	0	0	0	0	1	0	0	0	15713	739	26	2	2606	2	TCHHL1	1	152060504	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10	118263546	152060504	97190117	2	15521											
DEDD	9191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161093708	161093708	+	Silent	SNP	C	C	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	161093708	C	A	161093708	2	1	242	1	0	0	0	0	0	0	0	1	4386	581	21	4		4	DEDD	1	161093708	Silent	SNP	C	TCGA-B8-4154-01A-01D-1251-10	9033204	161093708	88156913	3	15522											
F13B	2165	broad.mit.edu;ucsc.edu	37	1	197029544	197029544	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	C	197029544	C	C	197029544	3	2	242	1	0	0	0	0	1	0	0	0	5343	1493	52	3	1260	3	F13B	1	197029544	Missense_Mutation	SNP	T	TCGA-B8-4154-01A-01D-1251-10	35935836	197029544	52221077	4	15523											
PLXNA2	5362	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	208207921	208207921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	G	208207921	A	G	208207921	3	3	242	1	0	0	0	0	1	0	0	0	12127	159	6	3	927	3	PLXNA2	1	208207921	Missense_Mutation	SNP	A	TCGA-B8-4154-01A-01D-1251-10	11178377	208207921	41042700	5	15524											
IARS2	55699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	220318884	220318884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	220318884	C	A	220318884	3	1	242	1	0	0	0	0	1	0	0	0	7481	827	29	4	2871	4	IARS2	1	220318884	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10	12110963	220318884	28931737	6	15525											
SOS1	6654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	39250004	39250004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	C	39250004	T	C	39250004	3	2	242	1	0	0	0	0	1	0	0	0	14949	1493	52	3	2492	3	SOS1	2	39250004	Missense_Mutation	SNP	T	TCGA-B8-4154-01A-01D-1251-10		39250004	203949369	7	15526											
NDUFS1	4719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	207008817	207008817	+	Silent	SNP	C	C	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	207008817	C	A	207008817	2	1	242	1	0	0	0	0	0	0	0	1	10298	796	28	4		4	NDUFS1	2	207008817	Silent	SNP	C	TCGA-B8-4154-01A-01D-1251-10	167758813	207008817	36190556	8	15527											
SLC4A3	6508	broad.mit.edu;hgsc.bcm.edu	37	2	220497001	220497001	+	Silent	SNP	C	C	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	220497001	C	T	220497001	2	4	242	1	0	0	0	0	0	0	0	1	14668	535	19	1		1	SLC4A3	2	220497001	Silent	SNP	C	TCGA-B8-4154-01A-01D-1251-10	13488184	220497001	22702372	9	15528											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191563	10191563	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	10191563	G	T	10191563	4	4	242	1	0	0	0	0	0	1	0	0	17174	1059	37	4	566	4	VHL	3	10191563	Nonsense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10		10191563	187830867	10	15529											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52682418	52682418	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	C	52682418	A	C	52682418	3	2	242	1	0	0	0	0	1	0	0	0	11498	449	16	5	4241	5	PBRM1	3	52682418	Missense_Mutation	SNP	A	TCGA-B8-4154-01A-01D-1251-10	42490855	52682418	145340012	11	15530											
C3orf67	200844	broad.mit.edu;hgsc.bcm.edu	37	3	58923375	58923375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	C	58923375	A	C	58923375	3	2	242	1	0	0	0	0	1	0	0	0	2243	115	4	5	1722	5	C3orf67	3	58923375	Missense_Mutation	SNP	A	TCGA-B8-4154-01A-01D-1251-10	6240957	58923375	139099055	12	15531											
MUC13	56667	hgsc.bcm.edu;ucsc.edu	37	3	124646754	124646754	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	124646754	T	A	124646754	3	1	242	1	0	0	0	0	1	0	0	0	9978	1696	59	5	1439	5	MUC13	3	124646754	Missense_Mutation	SNP	T	TCGA-B8-4154-01A-01D-1251-10	65723379	124646754	73375676	13	15532											
CLSTN2	64084	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	140122627	140122627	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	C	140122627	G	C	140122627	3	2	242	1	0	0	0	0	1	0	0	0	3564	1261	44	4	399	4	CLSTN2	3	140122627	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10	15475873	140122627	57899803	14	15533											
KCNAB1	7881	hgsc.bcm.edu;ucsc.edu	37	3	156009880	156009880	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	-	156009880	A	-	156009880	7	5	242	1	0	1	0	1	0	0	0	0	8016	131	5	0	711	0	KCNAB1	3	156009880	Frame_Shift_Del	DEL	A	TCGA-B8-4154-01A-01D-1251-10	15887253	156009880	42012550	15	15534											
MECOM	2122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	168849313	168849314	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	-	168849314	AG	-	168849313	7	5	242	1	0	1	0	1	0	0	0	0	9429	420	15	0	3261	0	MECOM	3	168849313	Frame_Shift_Del	DEL	AG	TCGA-B8-4154-01A-01D-1251-10	12839433	168849313	29173117	16	15535											
WFS1	7466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	6303445	6303445	+	Silent	SNP	G	G	A	rs139040290		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	6303445	G	A	6303445	2	1	242	1	0	0	0	0	0	0	0	1	17372	1103	39	1		1	WFS1	4	6303445	Silent	SNP	G	TCGA-B8-4154-01A-01D-1251-10		6303445	184850831	17	15536											
GABRA4	2557	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	46976378	46976378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	C	46976378	T	C	46976378	3	2	242	1	0	0	0	0	1	0	0	0	6170	1551	54	3	1088	3	GABRA4	4	46976378	Missense_Mutation	SNP	T	TCGA-B8-4154-01A-01D-1251-10	40672933	46976378	144177898	18	15537											
SLC7A11	23657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	139144404	139144404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	139144404	G	A	139144404	3	1	242	1	0	0	0	0	1	0	0	0	14707	971	34	2	946	2	SLC7A11	4	139144404	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10	92168026	139144404	52009872	19	15538											
SLC6A18	348932	broad.mit.edu;hgsc.bcm.edu	37	5	1232438	1232438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	1232438	G	T	1232438	3	4	242	1	0	0	0	0	1	0	0	0	14694	1145	40	4	271	4	SLC6A18	5	1232438	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10		1232438	179682822	20	15539											
CAPSL	133690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	35921149	35921149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	C	35921149	G	C	35921149	3	2	242	1	0	0	0	0	1	0	0	0	2641	1232	43	4	568	4	CAPSL	5	35921149	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10	34688711	35921149	144994111	21	15540											
C7	730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	40947837	40947837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	40947837	C	A	40947837	3	1	242	1	0	0	0	0	1	0	0	0	2377	739	26	4	902	4	C7	5	40947837	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10	5026688	40947837	139967423	22	15541											
PDE4D	5144	broad.mit.edu;ucsc.edu	37	5	59284433	59284433	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	59284433	T	T	59284433	3	4	242	1	0	0	0	0	1	0	0	0	11649	768	27	1	2662	1	PDE4D	5	59284433	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10	18336596	59284433	121630827	23	15542											
SSBP2	23635	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	80911317	80911317	+	Missense_Mutation	SNP	C	C	A	rs11555880		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	80911317	C	A	80911317	3	1	242	1	0	0	0	0	1	0	0	0	15192	565	20	4	884	4	SSBP2	5	80911317	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10	21626884	80911317	100003943	24	15543											
ANKHD1-EIF4EBP3	404734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139866633	139866633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	139866633	G	A	139866633	3	1	242	1	0	0	0	0	1	0	0	0	629	1001	35	2	2287	2	ANKHD1-EIF4EBP3	5	139866633	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10	58955316	139866633	41048627	25	15544											
RIMS1	22999	hgsc.bcm.edu	37	6	73100387	73100388	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	G	73100388	-	G	73100387	7	5	242	1	0	1	1	0	0	0	0	0	13380	652	23	0	4735	0	RIMS1	6	73100387	Frame_Shift_Ins	INS	-	TCGA-B8-4154-01A-01D-1251-10		73100387	98014680	26	15545											
KIAA1244	57221	broad.mit.edu	37	6	138655319	138655319	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	138655319	A	A	138655319	3	1	242	1	0	0	0	0	1	0	0	0	8224	1000	35	2	5466	2	KIAA1244	6	138655319	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10	65554932	138655319	32459748	27	15546											
MGC87042	0	broad.mit.edu;hgsc.bcm.edu	37	7	22534457	22534457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	22534457	G	T	22534457	3	4	242	1	0	0	0	0	1	0	0	0	9561	1368	48	4	1063	4	MGC87042	7	22534457	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10		22534457	136604206	28	15547											
FAM200A	221786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99145313	99145313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	99145313	G	A	99145313	3	1	242	1	0	0	0	0	1	0	0	0	5540	1290	45	2	1007	2	FAM200A	7	99145313	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10	76610856	99145313	59993350	29	15548											
MRPL15	29088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	55049858	55049858	+	Silent	SNP	C	C	G	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	G	55049858	C	G	55049858	2	3	242	1	0	0	0	0	0	0	0	1	9787	813	29	4		4	MRPL15	8	55049858	Silent	SNP	C	TCGA-B8-4154-01A-01D-1251-10		55049858	91314164	30	15549											
ROD1	0	broad.mit.edu;hgsc.bcm.edu	37	9	115038125	115038125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	115038125	T	A	115038125	3	1	242	1	0	0	0	0	1	0	0	0	13532	1594	55	5	1419	5	ROD1	9	115038125	Missense_Mutation	SNP	T	TCGA-B8-4154-01A-01D-1251-10		115038125	26175306	31	15550											
UPF2	26019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	12070760	12070760	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	12070760	T	A	12070760	3	1	242	1	0	0	0	0	1	0	0	0	17016	1638	57	5	2769	5	UPF2	10	12070760	Missense_Mutation	SNP	T	TCGA-B8-4154-01A-01D-1251-10		12070760	123463987	32	15551											
LIPK	643414	broad.mit.edu;hgsc.bcm.edu	37	10	90497391	90497391	+	Splice_Site	SNP	G	G	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	90497391	G	T	90497391	5	4	242	1	0	0	0	0	0	0	1	0	8834	1014	35	4	691	4	LIPK	10	90497391	Splice_Site	SNP	G	TCGA-B8-4154-01A-01D-1251-10	78426631	90497391	45037356	33	15552											
MS4A12	54860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60264961	60264961	+	Missense_Mutation	SNP	C	C	T	rs148561730		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	60264961	C	T	60264961	3	4	242	1	0	0	0	0	1	0	0	0	9863	652	23	1	172	1	MS4A12	11	60264961	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10		60264961	74741555	34	15553											
DAGLA	747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61504731	61504731	+	Silent	SNP	C	C	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	61504731	C	T	61504731	2	4	242	1	0	0	0	0	0	0	0	1	4228	854	30	2		2	DAGLA	11	61504731	Silent	SNP	C	TCGA-B8-4154-01A-01D-1251-10	1239770	61504731	73501785	35	15554											
EHD1	10938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64645686	64645686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	64645686	G	A	64645686	3	1	242	1	0	0	0	0	1	0	0	0	4979	1116	39	1	1373	1	EHD1	11	64645686	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10	3140955	64645686	70360830	36	15555											
EHBP1L1	254102	broad.mit.edu;ucsc.edu	37	11	65349886	65349886	+	Silent	SNP	G	A	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	65349886	A	A	65349886	2	1	242	1	0	0	0	0	0	0	0	1	4978	1306	46	2		2	EHBP1L1	11	65349886	Silent	SNP	G	TCGA-B8-4154-01A-01D-1251-10	704200	65349886	69656630	37	15556											
SYNE2	23224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64545255	64545255	+	Silent	SNP	G	G	C	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	C	64545255	G	C	64545255	2	2	242	1	0	0	0	0	0	0	0	1	15458	1190	42	4		4	SYNE2	14	64545255	Silent	SNP	G	TCGA-B8-4154-01A-01D-1251-10		64545255	42804285	38	15557											
ADAM21	8747	broad.mit.edu	37	14	70925981	70925981	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	70925981	T	T	70925981	3	4	242	1	0	0	0	0	1	0	0	0	243	159	6	5	1767	5	ADAM21	14	70925981	Missense_Mutation	SNP	A	TCGA-B8-4154-01A-01D-1251-10	6380726	70925981	36423559	39	15558											
C14orf166B	145497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	77327095	77327095	+	Silent	SNP	G	G	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	77327095	G	A	77327095	2	1	242	1	0	0	0	0	0	0	0	1	1759	1074	38	1		1	C14orf166B	14	77327095	Silent	SNP	G	TCGA-B8-4154-01A-01D-1251-10	6401114	77327095	30022445	40	15559											
STRA6	64220	broad.mit.edu	37	15	74472524	74472524	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	74472524	A	A	74472524	3	1	242	1	0	0	0	0	1	0	0	0	15334	768	27	4	106	4	STRA6	15	74472524	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10		74472524	28058868	41	15560											
MCTP2	55784	hgsc.bcm.edu;ucsc.edu	37	15	95013580	95013580	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	-	95013580	C	-	95013580	7	5	242	1	0	1	0	1	0	0	0	0	9408	842	30	0	2533	0	MCTP2	15	95013580	Frame_Shift_Del	DEL	C	TCGA-B8-4154-01A-01D-1251-10	20541056	95013580	7517812	42	15561											
DPEP2	64174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68026474	68026474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	68026474	C	T	68026474	3	4	242	1	0	0	0	0	1	0	0	0	4716	768	27	1	1167	1	DPEP2	16	68026474	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10		68026474	22328279	43	15562											
KIAA0174	0	hgsc.bcm.edu	37	16	71956529	71956529	+	Silent	SNP	C	C	T	rs28701631	bycluster;byfrequency;by1000genomes	TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	71956529	C	T	71956529	2	4	242	1	0	0	0	0	0	0	0	1	8165	581	21	2		2	KIAA0174	16	71956529	Silent	SNP	C	TCGA-B8-4154-01A-01D-1251-10	3930055	71956529	18398224	44	15563											
SMG6	23293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	2076117	2076117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	2076117	G	T	2076117	3	4	242	1	0	0	0	0	1	0	0	0	14810	933	33	4	1095	4	SMG6	17	2076117	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10		2076117	79119093	45	15564											
MYH3	4621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10551954	10551954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	10551954	C	T	10551954	3	4	242	1	0	0	0	0	1	0	0	0	10043	913	32	2	5303	2	MYH3	17	10551954	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10	8475837	10551954	70643256	46	15565											
PSMC5	5705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61907491	61907491	+	Splice_Site	SNP	A	A	G	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	G	61907491	A	G	61907491	5	3	242	1	0	0	0	0	0	0	1	0	12700	434	15	3	281	3	PSMC5	17	61907491	Splice_Site	SNP	A	TCGA-B8-4154-01A-01D-1251-10	51355537	61907491	19287719	47	15566											
SETBP1	26040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	42530906	42530906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	42530906	G	A	42530906	3	1	242	1	0	0	0	0	1	0	0	0	14142	1319	46	2	1804	2	SETBP1	18	42530906	Missense_Mutation	SNP	G	TCGA-B8-4154-01A-01D-1251-10		42530906	35546342	48	15567	203	2									
SETBP1	26040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	42530907	42530907	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	42530907	C	A	42530907	4	1	242	1	0	0	0	0	0	1	0	0	14142	718	25	4	1805	4	SETBP1	18	42530907	Nonsense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10	1	42530907	35546341	49	15568	203	2									
ZNF439	90594	broad.mit.edu;hgsc.bcm.edu	37	19	11979300	11979300	+	Silent	SNP	G	G	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	11979300	G	T	11979300	2	4	242	1	0	0	0	0	0	0	0	1	17923	1161	41	4		4	ZNF439	19	11979300	Silent	SNP	G	TCGA-B8-4154-01A-01D-1251-10		11979300	47149683	50	15569											
NLRP7	199713	hgsc.bcm.edu;ucsc.edu	37	19	55451609	55451609	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	-	55451609	A	-	55451609	7	5	242	1	0	1	0	1	0	0	0	0	10489	188	7	0	2567	0	NLRP7	19	55451609	Frame_Shift_Del	DEL	A	TCGA-B8-4154-01A-01D-1251-10	43472309	55451609	3677374	51	15570											
PHF20	51230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34515757	34515757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	34515757	A	T	34515757	3	4	242	1	0	0	0	0	1	0	0	0	11838	101	4	5	2110	5	PHF20	20	34515757	Missense_Mutation	SNP	A	TCGA-B8-4154-01A-01D-1251-10		34515757	28509763	52	15571											
PHF8	23133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	54019191	54019191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	54019191	C	A	54019191	3	1	242	1	0	0	0	0	1	0	0	0	11847	739	26	4	1572	4	PHF8	23	54019191	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10		54019191	101251369	53	15572											
TMEM185A	84548	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	148690436	148690436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	A	148690436	C	A	148690436	3	1	242	1	0	0	0	0	1	0	0	0	16119	507	18	4	771	4	TMEM185A	23	148690436	Missense_Mutation	SNP	C	TCGA-B8-4154-01A-01D-1251-10	94671245	148690436	6580124	54	15573											
MAGEA12	4111	broad.mit.edu	37	X	151896050	151896050	+	RNA	SNP	G	T	T	novel		TCGA-B8-4154-01A-01D-1251-10	TCGA-B8-4154-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e48f5c14-4b64-4d4b-8273-bebc74182181	92fc2606-210b-4ce0-856a-acef65c80d17	T	151896050	T	T	151896050	1	4	242	0	1	0	0	0	0	0	0	0	9173	1392	48	4		4	MAGEA12	23	151896050	RNA	SNP	G	TCGA-B8-4154-01A-01D-1251-10	3205614	151896050	3374510	55	15574											
ATAD2B	54454	broad.mit.edu	37	2	23977134	23977134	+	Missense_Mutation	SNP	A	A	C			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	C	23977134	A	C	23977134	3	2	243	1	0	0	0	0	1	0	0	0	1072	43	2	5	134	5	ATAD2B	2	23977134	Missense_Mutation	SNP	A	TCGA-B8-4619-01A-02D-1553-08		23977134	219222239	1	15575											
SAG	6295	broad.mit.edu	37	2	234237129	234237129	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	T	234237129	C	T	234237129	3	4	243	1	0	0	0	0	1	0	0	0	13821	855	30	2	544	2	SAG	2	234237129	Missense_Mutation	SNP	C	TCGA-B8-4619-01A-02D-1553-08	210259995	234237129	8962244	2	15576											
GPX1	2876	broad.mit.edu	37	3	49395503	49395503	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	A	49395503	C	A	49395503	3	1	243	1	0	0	0	0	1	0	0	0	6746	739	26	4	455	4	GPX1	3	49395503	Missense_Mutation	SNP	C	TCGA-B8-4619-01A-02D-1553-08		49395503	148626927	3	15577											
MAP1B	4131	broad.mit.edu	37	5	71499625	71499625	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	A	71499625	G	A	71499625	3	1	243	1	0	0	0	0	1	0	0	0	9235	1319	46	2	7270	2	MAP1B	5	71499625	Missense_Mutation	SNP	G	TCGA-B8-4619-01A-02D-1553-08		71499625	109415635	4	15578											
GRK6	2870	broad.mit.edu	37	5	176857936	176857936	+	Missense_Mutation	SNP	T	T	C			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	C	176857936	T	C	176857936	3	2	243	1	0	0	0	0	1	0	0	0	6800	1435	50	3	122	3	GRK6	5	176857936	Missense_Mutation	SNP	T	TCGA-B8-4619-01A-02D-1553-08	105358311	176857936	4057324	5	15579											
DOCK4	9732	broad.mit.edu	37	7	111424166	111424166	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	A	111424166	C	A	111424166	3	1	243	1	0	0	0	0	1	0	0	0	4691	609	21	4		4	DOCK4	7	111424166	Missense_Mutation	SNP	C	TCGA-B8-4619-01A-02D-1553-08		111424166	47714497	6	15580											
PTPRZ1	5803	broad.mit.edu	37	7	121636616	121636616	+	Missense_Mutation	SNP	A	A	T			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	T	121636616	A	T	121636616	3	4	243	1	0	0	0	0	1	0	0	0	12827	275	10	5	1143	5	PTPRZ1	7	121636616	Missense_Mutation	SNP	A	TCGA-B8-4619-01A-02D-1553-08	10212450	121636616	37502047	7	15581											
ZNF782	158431	broad.mit.edu	37	9	99581991	99581991	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	-	99581991	A	-	99581991	7	5	243	1	0	1	0	1	0	0	0	0	18167	372	13	0	1789	0	ZNF782	9	99581991	Frame_Shift_Del	DEL	A	TCGA-B8-4619-01A-02D-1553-08		99581991	41631440	8	15582											
GPR107	57720	broad.mit.edu	37	9	132890996	132890996	+	Silent	SNP	C	C	T			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	T	132890996	C	T	132890996	2	4	243	1	0	0	0	0	0	0	0	1	6630	518	18	2		2	GPR107	9	132890996	Silent	SNP	C	TCGA-B8-4619-01A-02D-1553-08	33309005	132890996	8322435	9	15583											
OR51B4	79339	broad.mit.edu	37	11	5322806	5322806	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	T	5322806	C	T	5322806	3	4	243	1	0	0	0	0	1	0	0	0	11097	768	27	1	564	1	OR51B4	11	5322806	Missense_Mutation	SNP	C	TCGA-B8-4619-01A-02D-1553-08		5322806	129683710	10	15584											
ZNF214	7761	broad.mit.edu	37	11	7022784	7022784	+	Missense_Mutation	SNP	T	T	G			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	G	7022784	T	G	7022784	3	3	243	1	0	0	0	0	1	0	0	0	17782	1841	64	5	1694	5	ZNF214	11	7022784	Missense_Mutation	SNP	T	TCGA-B8-4619-01A-02D-1553-08	1699978	7022784	127983732	11	15585											
PYGM	5837	broad.mit.edu	37	11	64514806	64514806	+	Missense_Mutation	SNP	A	A	C			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	C	64514806	A	C	64514806	3	2	243	1	0	0	0	0	1	0	0	0	12875	330	12	5	338	5	PYGM	11	64514806	Missense_Mutation	SNP	A	TCGA-B8-4619-01A-02D-1553-08	57492022	64514806	70491710	12	15586											
RPH3A	22895	broad.mit.edu	37	12	113303233	113303233	+	Missense_Mutation	SNP	G	G	A	rs141736304		TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	A	113303233	G	A	113303233	3	1	243	1	0	0	0	0	1	0	0	0	13564	1087	38	1	259	1	RPH3A	12	113303233	Missense_Mutation	SNP	G	TCGA-B8-4619-01A-02D-1553-08		113303233	20548662	13	15587											
TMEM132D	121256	broad.mit.edu	37	12	129558772	129558772	+	Missense_Mutation	SNP	G	G	C			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	C	129558772	G	C	129558772	3	2	243	1	0	0	0	0	1	0	0	0	16059	1059	37	4	355	4	TMEM132D	12	129558772	Missense_Mutation	SNP	G	TCGA-B8-4619-01A-02D-1553-08	16255539	129558772	4293123	14	15588											
CENPJ	55835	broad.mit.edu	37	13	25458475	25458475	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	A	25458475	G	A	25458475	3	1	243	1	0	0	0	0	1	0	0	0	3236	1203	42	2	428	2	CENPJ	13	25458475	Missense_Mutation	SNP	G	TCGA-B8-4619-01A-02D-1553-08		25458475	89711403	15	15589											
N4BP2L2	10443	broad.mit.edu	37	13	33110533	33110533	+	Missense_Mutation	SNP	T	T	C			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	C	33110533	T	C	33110533	3	2	243	1	0	0	0	0	1	0	0	0	10119	1493	52	3	3000	3	N4BP2L2	13	33110533	Missense_Mutation	SNP	T	TCGA-B8-4619-01A-02D-1553-08	7652058	33110533	82059345	16	15590											
SLC12A1	6557	broad.mit.edu	37	15	48559860	48559860	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	A	48559860	G	A	48559860	3	1	243	1	0	0	0	0	1	0	0	0	14395	1203	42	2	2423	2	SLC12A1	15	48559860	Missense_Mutation	SNP	G	TCGA-B8-4619-01A-02D-1553-08		48559860	53971532	17	15591											
NEIL1	79661	broad.mit.edu	37	15	75647015	75647015	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	A	75647015	G	A	75647015	3	1	243	1	0	0	0	0	1	0	0	0	10325	1203	42	2	988	2	NEIL1	15	75647015	Missense_Mutation	SNP	G	TCGA-B8-4619-01A-02D-1553-08	27087155	75647015	26884377	18	15592											
SLC12A4	6560	broad.mit.edu	37	16	67985066	67985066	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	T	67985066	C	T	67985066	3	4	243	1	0	0	0	0	1	0	0	0	14398	739	26	2	2047	2	SLC12A4	16	67985066	Missense_Mutation	SNP	C	TCGA-B8-4619-01A-02D-1553-08		67985066	22369687	19	15593											
AZI1	22994	broad.mit.edu	37	17	79180662	79180662	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	A	79180662	G	A	79180662	3	1	243	1	0	0	0	0	1	0	0	0	1240	1203	42	2	2933	2	AZI1	17	79180662	Missense_Mutation	SNP	G	TCGA-B8-4619-01A-02D-1553-08		79180662	2014548	20	15594											
ZNF320	162967	broad.mit.edu	37	19	53384636	53384636	+	Missense_Mutation	SNP	T	T	C			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	C	53384636	T	C	53384636	3	2	243	1	0	0	0	0	1	0	0	0	17851	1493	52	3	790	3	ZNF320	19	53384636	Missense_Mutation	SNP	T	TCGA-B8-4619-01A-02D-1553-08		53384636	5744347	21	15595											
TGM6	343641	broad.mit.edu	37	20	2411617	2411617	+	Missense_Mutation	SNP	G	G	T			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	T	2411617	G	T	2411617	3	4	243	1	0	0	0	0	1	0	0	0	15846	991	35	4	1957	4	TGM6	20	2411617	Missense_Mutation	SNP	G	TCGA-B8-4619-01A-02D-1553-08		2411617	60613903	22	15596											
RRBP1	6238	broad.mit.edu	37	20	17641122	17641122	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	T	17641122	C	T	17641122	3	4	243	1	0	0	0	0	1	0	0	0	13691	507	18	2	2998	2	RRBP1	20	17641122	Missense_Mutation	SNP	C	TCGA-B8-4619-01A-02D-1553-08	15229505	17641122	45384398	23	15597											
CTCFL	140690	broad.mit.edu	37	20	56093824	56093824	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-4619-01A-02D-1553-08	TCGA-B8-4619-11A-01D-1553-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e16d8c96-e679-4c87-ad6d-5e58d6a9d267	4c1d2f74-ab88-4783-ae81-e99a218211c7	A	56093824	G	A	56093824	3	1	243	1	0	0	0	0	1	0	0	0	4003	1203	42	2	970	2	CTCFL	20	56093824	Missense_Mutation	SNP	G	TCGA-B8-4619-01A-02D-1553-08	38452702	56093824	6931696	24	15598											
TP73	7161	hgsc.bcm.edu	37	1	3645988	3645989	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	G	3645989	-	G	3645988	7	5	244	1	0	1	1	0	0	0	0	0	16405	188	7	0	1249	0	TP73	1	3645988	Frame_Shift_Ins	INS	-	TCGA-B8-4620-01A-01D-1553-08		3645988	245604633	1	15599											
LIN28A	79727	broad.mit.edu	37	1	26737960	26737960	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	26737960	T	T	26737960	3	4	244	1	0	0	0	0	1	0	0	0	8812	710	25	2	121	2	LIN28A	1	26737960	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-01D-1553-08	23091972	26737960	222512661	2	15600											
HIST2H3D	653604	broad.mit.edu;hgsc.bcm.edu	37	1	149785229	149785229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	149785229	C	T	149785229	3	4	244	1	0	0	0	0	1	0	0	0	7188	536	19	1	404	1	HIST2H3D	1	149785229	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-01D-1553-08	123047269	149785229	99465392	3	15601											
KCNF1	3754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11053935	11053935	+	Silent	SNP	G	G	A	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	A	11053935	G	A	11053935	2	1	244	1	0	0	0	0	0	0	0	1	8033	1074	38	1		1	KCNF1	2	11053935	Silent	SNP	G	TCGA-B8-4620-01A-01D-1553-08		11053935	232145438	4	15602											
ASTL	431705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	96789912	96789912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	96789912	G	T	96789912	3	4	244	1	0	0	0	0	1	0	0	0	1063	1232	43	4	325	4	ASTL	2	96789912	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-01D-1553-08	85735977	96789912	146409461	5	15603											
TGFBRAP1	9392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	105886106	105886106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	A	105886106	C	A	105886106	3	1	244	1	0	0	0	0	1	0	0	0	15836	623	22	4	561	4	TGFBRAP1	2	105886106	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-01D-1553-08	9096194	105886106	137313267	6	15604											
FAM55C	0	broad.mit.edu	37	3	101520532	101520532	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	101520532	T	T	101520532	3	4	244	1	0	0	0	0	1	0	0	0	5593	1029	36	4	553	4	FAM55C	3	101520532	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-01D-1553-08		101520532	96501898	7	15605											
PRSS16	10279	hgsc.bcm.edu	37	6	27218496	27218497	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	C	27218497	-	C	27218496	7	5	244	1	0	1	1	0	0	0	0	0	12626	1783	62	0	520	0	PRSS16	6	27218496	Frame_Shift_Ins	INS	-	TCGA-B8-4620-01A-01D-1553-08		27218496	143896571	8	15606											
BAG4	9530	broad.mit.edu	37	8	38034599	38034599	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	A	38034599	A	A	38034599	3	1	244	1	0	0	0	0	1	0	0	0	1289	1203	42	2	214	2	BAG4	8	38034599	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-01D-1553-08		38034599	108329423	9	15607											
C9orf16	79095	hgsc.bcm.edu	37	9	130925841	130925841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	130925841	C	T	130925841	3	4	244	1	0	0	0	0	1	0	0	0	2468	536	19	1	205	1	C9orf16	9	130925841	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-01D-1553-08		130925841	10287590	10	15608											
ADAMTS13	11093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136291396	136291396	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	-	136291396	G	-	136291396	7	5	244	1	0	1	0	1	0	0	0	0	258	1357	47	0	639	0	ADAMTS13	9	136291396	Frame_Shift_Del	DEL	G	TCGA-B8-4620-01A-01D-1553-08	5365555	136291396	4922035	11	15609											
ART1	417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	3681532	3681532	+	Silent	SNP	C	C	T	rs139469651		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	3681532	C	T	3681532	2	4	244	1	0	0	0	0	0	0	0	1	997	639	23	1		1	ART1	11	3681532	Silent	SNP	C	TCGA-B8-4620-01A-01D-1553-08		3681532	131324984	12	15610											
USP35	57558	hgsc.bcm.edu	37	11	77921393	77921402	+	Frame_Shift_Del	DEL	TGCTGCTCCG	TGCTGCTCCG	-	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	TGCTGCTCCG	TGCTGCTCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	-	77921402	TGCTGCTCCG	-	77921393	7	5	244	1	0	1	0	1	0	0	0	0	17078	1580	55	0	2526	0	USP35	11	77921393	Frame_Shift_Del	DEL	TGCTGCTCCG	TCGA-B8-4620-01A-01D-1553-08	74239861	77921393	57085123	13	15611											
FAM124A	220108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	51826047	51826047	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	51826047	A	T	51826047	3	4	244	1	0	0	0	0	1	0	0	0	5429	130	5	5	666	5	FAM124A	13	51826047	Missense_Mutation	SNP	A	TCGA-B8-4620-01A-01D-1553-08		51826047	63343831	14	15612											
CDH24	64403	broad.mit.edu	37	14	23521190	23521190	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	-	23521190	-	-	23521190	7	5	244	1	0	1	0	1	0	0	0	0	3111	855	30	0	1013	0	CDH24	14	23521190	Frame_Shift_Del	DEL	C	TCGA-B8-4620-01A-01D-1553-08		23521190	83828350	15	15613											
CILP	8483	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65499358	65499358	+	Silent	SNP	G	G	T	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	65499358	G	T	65499358	2	4	244	1	0	0	0	0	0	0	0	1	3431	1048	37	4		4	CILP	15	65499358	Silent	SNP	G	TCGA-B8-4620-01A-01D-1553-08		65499358	37032034	16	15614											
SETD1A	9739	hgsc.bcm.edu	37	16	30975991	30975992	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	C	30975992	-	C	30975991	7	5	244	1	0	1	1	0	0	0	0	0	14143	1783	62	0	950	0	SETD1A	16	30975991	Frame_Shift_Ins	INS	-	TCGA-B8-4620-01A-01D-1553-08		30975991	59378762	17	15615											
MEOX1	4222	broad.mit.edu;hgsc.bcm.edu	37	17	41738797	41738797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	41738797	G	T	41738797	3	4	244	1	0	0	0	0	1	0	0	0	9480	1261	44	4	670	4	MEOX1	17	41738797	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-01D-1553-08		41738797	39456413	18	15616											
KRTAP20-2	337976	broad.mit.edu;ucsc.edu	37	21	32007632	32007632	+	Missense_Mutation	SNP	T	G	G	rs8132721	bycluster;by2hit2allele	TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	G	32007632	G	G	32007632	3	3	244	1	0	0	0	0	1	0	0	0	8544	1667	58	5	52	5	KRTAP20-2	21	32007632	Missense_Mutation	SNP	T	TCGA-B8-4620-01A-01D-1553-08		32007632	16122263	19	15617											
SUSD2	56241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24580140	24580140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	C	24580140	A	C	24580140	3	2	244	1	0	0	0	0	1	0	0	0	15420	304	11	5	490	5	SUSD2	22	24580140	Missense_Mutation	SNP	A	TCGA-B8-4620-01A-01D-1553-08		24580140	26724426	20	15618											
TMPRSS6	164656	broad.mit.edu	37	22	37480371	37480371	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-4620-01A-01D-1553-08	TCGA-B8-4620-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69686924-5a9f-4e07-9e6d-62a3435f9971	eb4eb312-f11f-4a33-bf85-bb0d4a294c54	T	37480371	T	T	37480371	3	4	244	1	0	0	0	0	1	0	0	0	16263	1116	39	4	1284	4	TMPRSS6	22	37480371	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-01D-1553-08	12900231	37480371	13824195	21	15619											
DPYD	1806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	98164907	98164907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	T	98164907	C	T	98164907	3	4	245	1	0	0	0	0	1	0	0	0	4747	695	24	2	2469	2	DPYD	1	98164907	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10		98164907	151085714	1	15620											
FLG2	388698	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152323999	152323999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	152323999	C	G	152323999	3	3	245	1	0	0	0	0	1	0	0	0	5930	855	30	4	916	4	FLG2	1	152323999	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10	54159092	152323999	96926622	2	15621											
CFHR2	3080	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	196927137	196927137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	196927137	C	A	196927137	3	1	245	1	0	0	0	0	1	0	0	0	3287	827	29	4	561	4	CFHR2	1	196927137	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10	44603138	196927137	52323484	3	15622											
CD55	1604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	207495818	207495818	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	207495818	A	C	207495818	3	2	245	1	0	0	0	0	1	0	0	0	3026	98	4	5	198	5	CD55	1	207495818	Missense_Mutation	SNP	A	TCGA-B8-4620-01A-02D-1386-10	10568681	207495818	41754803	4	15623											
EPAS1	2034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	46611722	46611723	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	-	46611723	GT	-	46611722	7	5	245	1	0	1	0	1	0	0	0	0	5152	1261	44	0	2598	0	EPAS1	2	46611722	Frame_Shift_Del	DEL	GT	TCGA-B8-4620-01A-02D-1386-10		46611722	196587651	5	15624											
ANAPC1	64682	hgsc.bcm.edu	37	2	112536274	112536274	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	-	112536274	G	-	112536274	7	5	245	1	0	1	0	1	0	0	0	0	598	1000	35	0	487	0	ANAPC1	2	112536274	Frame_Shift_Del	DEL	G	TCGA-B8-4620-01A-02D-1386-10	65924552	112536274	130663099	6	15625											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47125280	47125289	+	Frame_Shift_Del	DEL	TCTTGGCTCC	TCTTGGCTCC	-	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	TCTTGGCTCC	TCTTGGCTCC	TCTTGGCTCC	-	TCTTGGCTCC	TCTTGGCTCC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	-	47125289	TCTTGGCTCC	-	47125280	7	5	245	1	0	1	0	1	0	0	0	0	14144	1783	62	0	1744	0	SETD2	3	47125280	Frame_Shift_Del	DEL	TCTTGGCTCC	TCGA-B8-4620-01A-02D-1386-10		47125280	150897150	7	15626	204	3									
SETD2	29072	ucsc.edu	37	3	47125288	47125288	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	C	G	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	47125288	C	G	47125288	3	3	245	1	0	0	0	0	1	0	0	0	14144	854	30	4	1752	4	SETD2	3	47125288	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10	8	47125288	150897142	8	15627	204	3									
SETD2	29072	ucsc.edu	37	3	47125289	47125289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	T	47125289	C	T	47125289	3	4	245	1	0	0	0	0	1	0	0	0	14144	681	24	2	1753	2	SETD2	3	47125289	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10	1	47125289	150897141	9	15628	204	3									
MITF	4286	broad.mit.edu;hgsc.bcm.edu	37	3	69987112	69987112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	69987112	G	A	69987112	3	1	245	1	0	0	0	0	1	0	0	0	9603	1203	42	2	706	2	MITF	3	69987112	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10	22861823	69987112	128035318	10	15629											
SERPINI1	5274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	167540830	167540830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	167540830	G	A	167540830	3	1	245	1	0	0	0	0	1	0	0	0	14131	1291	45	2	1058	2	SERPINI1	3	167540830	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10	97553718	167540830	30481600	11	15630											
MUC4	4585	broad.mit.edu	37	3	195505872	195505872	+	Silent	SNP	A	C	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	195505872	C	C	195505872	2	2	245	1	0	0	0	0	0	0	0	1	9985	233	9	5		5	MUC4	3	195505872	Silent	SNP	A	TCGA-B8-4620-01A-02D-1386-10	27965042	195505872	2516558	12	15631	205	2									
MUC4	4585	broad.mit.edu	37	3	195505874	195505874	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	195505874	C	C	195505874	3	2	245	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195505874	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10	2	195505874	2516556	13	15632	205	2									
MUC4	4585	hgsc.bcm.edu	37	3	195510060	195510107	+	In_Frame_Del	DEL	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	-	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	-	195510107	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	-	195510060	7	5	245	1	0	1	0	1	0	0	0	0	9985	1368	48	0		0	MUC4	3	195510060	In_Frame_Del	DEL	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	TCGA-B8-4620-01A-02D-1386-10	4186	195510060	2512370	14	15633											
BDP1	55814	broad.mit.edu;ucsc.edu	37	5	70840940	70840940	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	T	70840940	T	T	70840940	3	4	245	1	0	0	0	0	1	0	0	0	1395	1232	43	4	6764	4	BDP1	5	70840940	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10		70840940	110074320	15	15634											
ETF1	2107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137846859	137846862	+	Frame_Shift_Del	DEL	GTGT	GTGT	-	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	GTGT	GTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	-	137846862	GTGT	-	137846859	7	5	245	1	0	1	0	1	0	0	0	0	5270	1145	40	0	436	0	ETF1	5	137846859	Frame_Shift_Del	DEL	GTGT	TCGA-B8-4620-01A-02D-1386-10	67005919	137846859	43068401	16	15635											
TRIM41	90933	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	180651556	180651556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	180651556	G	C	180651556	3	2	245	1	0	0	0	0	1	0	0	0	16528	1319	46	4	559	4	TRIM41	5	180651556	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10	42804697	180651556	263704	17	15636											
DLK2	65989	broad.mit.edu;hgsc.bcm.edu	37	6	43418521	43418521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	43418521	C	A	43418521	3	1	245	1	0	0	0	0	1	0	0	0	4567	507	18	4	247	4	DLK2	6	43418521	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10		43418521	127696546	18	15637											
TDRD6	221400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46658611	46658611	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	46658611	A	C	46658611	3	2	245	1	0	0	0	0	1	0	0	0	15746	15	1	5	2748	5	TDRD6	6	46658611	Missense_Mutation	SNP	A	TCGA-B8-4620-01A-02D-1386-10	3240090	46658611	124456456	19	15638											
HACE1	57531	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	105298826	105298826	+	Silent	SNP	A	A	G	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	105298826	A	G	105298826	2	3	245	1	0	0	0	0	0	0	0	1	6947	224	8	3		3	HACE1	6	105298826	Silent	SNP	A	TCGA-B8-4620-01A-02D-1386-10	58640215	105298826	65816241	20	15639											
SGK1	6446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	134495196	134495196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	134495196	T	C	134495196	3	2	245	1	0	0	0	0	1	0	0	0	14220	1792	62	3	1160	3	SGK1	6	134495196	Missense_Mutation	SNP	T	TCGA-B8-4620-01A-02D-1386-10	29196370	134495196	36619871	21	15640											
IYD	389434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	150715251	150715251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	150715251	G	C	150715251	3	2	245	1	0	0	0	0	1	0	0	0	7939	943	33	4	561	4	IYD	6	150715251	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10	16220055	150715251	20399816	22	15641											
COBL	23242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	51096089	51096089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	51096089	C	G	51096089	3	3	245	1	0	0	0	0	1	0	0	0	3655	565	20	4	1097	4	COBL	7	51096089	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10		51096089	108042574	23	15642											
FLNC	2318	broad.mit.edu;hgsc.bcm.edu	37	7	128484128	128484128	+	Missense_Mutation	SNP	T	T	G	rs184454068	by1000genomes;alternate_allele	TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	128484128	T	G	128484128	3	3	245	1	0	0	0	0	1	0	0	0	5942	1461	51	5	3078	5	FLNC	7	128484128	Missense_Mutation	SNP	T	TCGA-B8-4620-01A-02D-1386-10	77388039	128484128	30654535	24	15643											
ASH2L	9070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	37974168	37974168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	T	37974168	G	T	37974168	3	4	245	1	0	0	0	0	1	0	0	0	1042	1188	41	4	808	4	ASH2L	8	37974168	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10		37974168	108389854	25	15644											
LYPLA1	10434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	54978369	54978369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	T	54978369	C	T	54978369	3	4	245	1	0	0	0	0	1	0	0	0	9123	661	23	1	614	1	LYPLA1	8	54978369	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10	17004201	54978369	91385653	26	15645											
STAU2	27067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	74527933	74527933	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	74527933	G	C	74527933	3	2	245	1	0	0	0	0	1	0	0	0	15285	1095	38	4	1213	4	STAU2	8	74527933	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10	19549564	74527933	71836089	27	15646	206	2									
STAU2	27067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	74527934	74527934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	74527934	C	A	74527934	3	1	245	1	0	0	0	0	1	0	0	0	15285	796	28	4	1214	4	STAU2	8	74527934	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10	1	74527934	71836088	28	15647	206	2									
IFITM2	10581	broad.mit.edu;hgsc.bcm.edu	37	11	308415	308415	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	308415	A	C	308415	3	2	245	1	0	0	0	0	1	0	0	0	7534	217	8	5	225	5	IFITM2	11	308415	Missense_Mutation	SNP	A	TCGA-B8-4620-01A-02D-1386-10		308415	134698101	29	15648											
APPL2	55198	broad.mit.edu;hgsc.bcm.edu	37	12	105582196	105582196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	105582196	G	A	105582196	3	1	245	1	0	0	0	0	1	0	0	0	818	1057	37	1	525	1	APPL2	12	105582196	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10		105582196	28269699	30	15649											
SACS	26278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	23914058	23914058	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	23914058	C	G	23914058	3	3	245	1	0	0	0	0	1	0	0	0	13817	680	24	4	9786	4	SACS	13	23914058	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10		23914058	91255820	31	15650	207	2									
SACS	26278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	23914059	23914059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	23914059	T	G	23914059	3	3	245	1	0	0	0	0	1	0	0	0	13817	1609	56	5	9787	5	SACS	13	23914059	Missense_Mutation	SNP	T	TCGA-B8-4620-01A-02D-1386-10	1	23914059	91255819	32	15651	207	2									
AKT1	207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	105246482	105246482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	T	105246482	C	T	105246482	3	4	245	1	0	0	0	0	1	0	0	0	478	864	30	2	1372	2	AKT1	14	105246482	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10		105246482	2103058	33	15652											
B2M	567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45007701	45007701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	-	45007701	T	-	45007701	7	5	245	1	0	1	0	1	0	0	0	0	1244	1725	60	0	154	0	B2M	15	45007701	Frame_Shift_Del	DEL	T	TCGA-B8-4620-01A-02D-1386-10		45007701	57523691	34	15653	208	2									
B2M	567	hgsc.bcm.edu	37	15	45007705	45007705	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	45007705	A	C	45007705	3	2	245	1	0	0	0	0	1	0	0	0	1244	217	8	5	158	5	B2M	15	45007705	Missense_Mutation	SNP	A	TCGA-B8-4620-01A-02D-1386-10	4	45007705	57523687	35	15654	208	2									
GOLGA6D	653643	broad.mit.edu	37	15	75586110	75586110	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	T	75586110	T	T	75586110	3	4	245	1	0	0	0	0	1	0	0	0	6567	536	19	1	1692	1	GOLGA6D	15	75586110	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10	30578405	75586110	26945282	36	15655											
CLCN7	1186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1510843	1510843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	1510843	C	A	1510843	3	1	245	1	0	0	0	0	1	0	0	0	3470	739	26	4	2043	4	CLCN7	16	1510843	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10		1510843	88843910	37	15656											
TNFAIP1	7126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26667402	26667402	+	Silent	SNP	C	C	T	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	T	26667402	C	T	26667402	2	4	245	1	0	0	0	0	0	0	0	1	16284	581	21	2		2	TNFAIP1	17	26667402	Silent	SNP	C	TCGA-B8-4620-01A-02D-1386-10		26667402	54527808	38	15657											
GGNBP2	79893	broad.mit.edu	37	17	34901611	34901611	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	34901611	G	G	34901611	3	3	245	1	0	0	0	0	1	0	0	0	6366	304	11	3	40	3	GGNBP2	17	34901611	Missense_Mutation	SNP	A	TCGA-B8-4620-01A-02D-1386-10	8234209	34901611	46293599	39	15658											
LRRC37A3	374819	broad.mit.edu	37	17	62892204	62892204	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	62892204	A	A	62892204	3	1	245	1	0	0	0	0	1	0	0	0	9000	1783	62	5	3780	5	LRRC37A3	17	62892204	Missense_Mutation	SNP	T	TCGA-B8-4620-01A-02D-1386-10	27990593	62892204	18303006	40	15659											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9070657	9070657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	T	9070657	C	T	9070657	3	4	245	1	0	0	0	0	1	0	0	0	9980	536	19	1	27062	1	MUC16	19	9070657	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10		9070657	50058326	41	15660											
LILRB5	10990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54756788	54756788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	54756788	G	A	54756788	3	1	245	1	0	0	0	0	1	0	0	0	8801	1000	35	2	375	2	LILRB5	19	54756788	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10	45686131	54756788	4372195	42	15661											
KIR3DL1	3811	hgsc.bcm.edu;ucsc.edu	37	19	55341674	55341674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	-	55341674	T	-	55341674	7	5	245	1	0	1	0	1	0	0	0	0	8327	1606	56	0	1313	0	KIR3DL1	19	55341674	Frame_Shift_Del	DEL	T	TCGA-B8-4620-01A-02D-1386-10	584886	55341674	3787309	43	15662											
LAMA5	3911	broad.mit.edu;hgsc.bcm.edu	37	20	60888399	60888399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	60888399	C	G	60888399	3	3	245	1	0	0	0	0	1	0	0	0	8616	855	30	4	2379	4	LAMA5	20	60888399	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10		60888399	2137121	44	15663											
C22orf36	0	hgsc.bcm.edu;ucsc.edu	37	22	24984203	24984204	+	In_Frame_Ins	INS	-	-	GCA	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	GCA	24984204	-	GCA	24984203	7	5	245	1	0	1	1	0	0	0	0	0	2148	768	27	0	554	0	C22orf36	22	24984203	In_Frame_Ins	INS	-	TCGA-B8-4620-01A-02D-1386-10		24984203	26320363	45	15664											
FANCB	2187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	14882777	14882777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	14882777	C	A	14882777	3	1	245	1	0	0	0	0	1	0	0	0	5670	710	25	4	1755	4	FANCB	23	14882777	Missense_Mutation	SNP	C	TCGA-B8-4620-01A-02D-1386-10		14882777	140387783	46	15665											
TAB3	257397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	30849594	30849594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	30849594	G	A	30849594	3	1	245	1	0	0	0	0	1	0	0	0	15509	1348	47	2	53	2	TAB3	23	30849594	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10	15966817	30849594	124420966	47	15666											
NHSL2	340527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	71360504	71360504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	G	71360504	A	G	71360504	3	3	245	1	0	0	0	0	1	0	0	0	10419	217	8	3	3128	3	NHSL2	23	71360504	Missense_Mutation	SNP	A	TCGA-B8-4620-01A-02D-1386-10	40510910	71360504	83910056	48	15667											
NAP1L3	4675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	92927545	92927545	+	Silent	SNP	T	T	C	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	C	92927545	T	C	92927545	2	2	245	1	0	0	0	0	0	0	0	1	10165	1606	56	3		3	NAP1L3	23	92927545	Silent	SNP	T	TCGA-B8-4620-01A-02D-1386-10	21567041	92927545	62343015	49	15668											
GPR112	139378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135441581	135441581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4620-01A-02D-1386-10	TCGA-B8-4620-10A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f50f3b5-e656-48ec-ba8e-b6af62465fa0	ddcc7f39-2b43-4f58-8286-b87f48a97fd7	A	135441581	G	A	135441581	3	1	245	1	0	0	0	0	1	0	0	0	6636	1029	36	2	7141	2	GPR112	23	135441581	Missense_Mutation	SNP	G	TCGA-B8-4620-01A-02D-1386-10	42514036	135441581	19828979	50	15669											
MTOR	2475	broad.mit.edu;ucsc.edu	37	1	11168294	11168294	+	Silent	SNP	C	T	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	11168294	T	T	11168294	2	4	246	1	0	0	0	0	0	0	0	1	9961	796	28	2		2	MTOR	1	11168294	Silent	SNP	C	TCGA-B8-4621-01A-01D-1501-10		11168294	238082327	1	15670											
CLCNKB	1188	hgsc.bcm.edu;ucsc.edu	37	1	16377066	16377067	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	16377067	-	A	16377066	7	5	246	1	0	1	1	0	0	0	0	0	3472	507	18	0	1210	0	CLCNKB	1	16377066	Frame_Shift_Ins	INS	-	TCGA-B8-4621-01A-01D-1501-10	5208772	16377066	232873555	2	15671											
ATP13A2	23400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	17322948	17322948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	17322948	G	T	17322948	3	4	246	1	0	0	0	0	1	0	0	0	1124	1252	44	4	2607	4	ATP13A2	1	17322948	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	945882	17322948	231927673	3	15672											
TRIM63	84676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26385106	26385106	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	26385106	A	C	26385106	3	2	246	1	0	0	0	0	1	0	0	0	16550	272	10	5	475	5	TRIM63	1	26385106	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10	9062158	26385106	222865515	4	15673											
PCSK9	255738	broad.mit.edu;hgsc.bcm.edu	37	1	55527082	55527082	+	Silent	SNP	C	C	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	55527082	C	T	55527082	2	4	246	1	0	0	0	0	0	0	0	1	11613	697	25	2		2	PCSK9	1	55527082	Silent	SNP	C	TCGA-B8-4621-01A-01D-1501-10	29141976	55527082	193723539	5	15674											
ATP2B4	493	hgsc.bcm.edu;ucsc.edu	37	1	203652386	203652387	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	203652387	GT	-	203652386	7	5	246	1	0	1	0	1	0	0	0	0	1142	1145	40	0	55	0	ATP2B4	1	203652386	Frame_Shift_Del	DEL	GT	TCGA-B8-4621-01A-01D-1501-10	148125304	203652386	45598235	6	15675											
XDH	7498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	31571778	31571778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	31571778	G	T	31571778	3	4	246	1	0	0	0	0	1	0	0	0	17438	1000	35	4	1003	4	XDH	2	31571778	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10		31571778	211627595	7	15676											
GEMIN6	79833	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	39008932	39008932	+	Silent	SNP	T	T	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	39008932	T	G	39008932	2	3	246	1	0	0	0	0	0	0	0	1	6339	1509	53	5		5	GEMIN6	2	39008932	Silent	SNP	T	TCGA-B8-4621-01A-01D-1501-10	7437154	39008932	204190441	8	15677											
SOS1	6654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	39285889	39285889	+	Silent	SNP	G	G	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	39285889	G	T	39285889	2	4	246	1	0	0	0	0	0	0	0	1	14949	1219	43	4		4	SOS1	2	39285889	Silent	SNP	G	TCGA-B8-4621-01A-01D-1501-10	276957	39285889	203913484	9	15678											
VRK2	7444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	58350342	58350342	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	58350342	C	-	58350342	7	5	246	1	0	1	0	1	0	0	0	0	17232	507	18	0	676	0	VRK2	2	58350342	Frame_Shift_Del	DEL	C	TCGA-B8-4621-01A-01D-1501-10	19064453	58350342	184849031	10	15679											
VRK2	7444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	58358987	58358987	+	Silent	SNP	C	C	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	58358987	C	T	58358987	2	4	246	1	0	0	0	0	0	0	0	1	17232	796	28	2		2	VRK2	2	58358987	Silent	SNP	C	TCGA-B8-4621-01A-01D-1501-10	8645	58358987	184840386	11	15680											
THSD7B	80731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	138033500	138033500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	138033500	C	A	138033500	3	1	246	1	0	0	0	0	1	0	0	0	15892	739	26	4	2353	4	THSD7B	2	138033500	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	79674513	138033500	105165873	12	15681											
HTR2B	3357	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	231973291	231973291	+	Silent	SNP	A	A	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	231973291	A	G	231973291	2	3	246	1	0	0	0	0	0	0	0	1	7449	446	16	3		3	HTR2B	2	231973291	Silent	SNP	A	TCGA-B8-4621-01A-01D-1501-10	93939791	231973291	11226082	13	15682											
SLC25A36	55186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	140675511	140675511	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	140675511	C	-	140675511	7	5	246	1	0	1	0	1	0	0	0	0	14513	855	30	0	190	0	SLC25A36	3	140675511	Frame_Shift_Del	DEL	C	TCGA-B8-4621-01A-01D-1501-10		140675511	57346919	14	15683											
ST6GAL1	6480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186761061	186761061	+	Silent	SNP	G	G	A	rs141692826		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	186761061	G	A	186761061	2	1	246	1	0	0	0	0	0	0	0	1	15233	1103	39	1		1	ST6GAL1	3	186761061	Silent	SNP	G	TCGA-B8-4621-01A-01D-1501-10	46085550	186761061	11261369	15	15684											
MUC4	4585	hgsc.bcm.edu	37	3	195508442	195508537	+	In_Frame_Del	DEL	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	195508537	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	195508442	7	5	246	1	0	1	0	1	0	0	0	0	9985	797	28	0		0	MUC4	3	195508442	In_Frame_Del	DEL	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	TCGA-B8-4621-01A-01D-1501-10	8747381	195508442	2513988	16	15685											
ZNF595	152687	broad.mit.edu;hgsc.bcm.edu	37	4	86237	86237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	86237	G	A	86237	3	1	246	1	0	0	0	0	1	0	0	0	18037	942	33	2	856	2	ZNF595	4	86237	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10		86237	191068039	17	15686											
HSD17B11	51170	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	88293948	88293948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	88293948	G	A	88293948	3	1	246	1	0	0	0	0	1	0	0	0	7387	1000	35	2	448	2	HSD17B11	4	88293948	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	88207711	88293948	102860328	18	15687											
FAT1	2195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	187549904	187549904	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	187549904	A	T	187549904	3	4	246	1	0	0	0	0	1	0	0	0	5696	391	14	5	9509	5	FAT1	4	187549904	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10	99255956	187549904	3604372	19	15688											
ERBB2IP	55914	broad.mit.edu;ucsc.edu	37	5	65288621	65288621	+	Silent	SNP	T	C	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	65288621	C	C	65288621	2	2	246	1	0	0	0	0	0	0	0	1	5209	1509	53	3		3	ERBB2IP	5	65288621	Silent	SNP	T	TCGA-B8-4621-01A-01D-1501-10		65288621	115626639	20	15689											
ZNF608	57507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	123982880	123982880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	123982880	A	G	123982880	3	3	246	1	0	0	0	0	1	0	0	0	18046	159	6	3	1365	3	ZNF608	5	123982880	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10	58694259	123982880	56932380	21	15690											
PCDHB8	56128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140559876	140559876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	140559876	T	C	140559876	3	2	246	1	0	0	0	0	1	0	0	0	11555	1696	59	3	2263	3	PCDHB8	5	140559876	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10	16576996	140559876	40355384	22	15691											
CDX1	1044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149562381	149562381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	149562381	C	A	149562381	3	1	246	1	0	0	0	0	1	0	0	0	3184	536	19	4	502	4	CDX1	5	149562381	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	9002505	149562381	31352879	23	15692											
ZNF184	7738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27420285	27420285	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	27420285	T	A	27420285	3	1	246	1	0	0	0	0	1	0	0	0	17763	1722	60	5	1206	5	ZNF184	6	27420285	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10		27420285	143694782	24	15693											
KCNK5	8645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	39162421	39162421	+	Silent	SNP	C	C	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	39162421	C	G	39162421	2	3	246	1	0	0	0	0	0	0	0	1	8076	610	22	4		4	KCNK5	6	39162421	Silent	SNP	C	TCGA-B8-4621-01A-01D-1501-10	11742136	39162421	131952646	25	15694											
TFEB	7942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	41658461	41658461	+	Silent	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	41658461	G	A	41658461	2	1	246	1	0	0	0	0	0	0	0	1	15813	1306	46	2		2	TFEB	6	41658461	Silent	SNP	G	TCGA-B8-4621-01A-01D-1501-10	2496040	41658461	129456606	26	15695											
PKHD1	5314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	51917916	51917916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	51917916	A	G	51917916	3	3	246	1	0	0	0	0	1	0	0	0	11978	43	2	3	10353	3	PKHD1	6	51917916	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10	10259455	51917916	119197151	27	15696											
NKAIN2	154215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	124979381	124979381	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	124979381	G	-	124979381	7	5	246	1	0	1	0	1	0	0	0	0	10443	1357	47	0	337	0	NKAIN2	6	124979381	Frame_Shift_Del	DEL	G	TCGA-B8-4621-01A-01D-1501-10	73061465	124979381	46135686	28	15697											
PTPN12	5782	broad.mit.edu	37	7	77166962	77166962	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	77166962	A	A	77166962	3	1	246	1	0	0	0	0	1	0	0	0	12792	1362	47	2	101	2	PTPN12	7	77166962	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10		77166962	81971701	29	15698											
ADAM22	53616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	87795203	87795203	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	87795203	C	A	87795203	4	1	246	1	0	0	0	0	0	1	0	0	244	718	25	4	2227	4	ADAM22	7	87795203	Nonsense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	10628241	87795203	71343460	30	15699											
MTERF	7978	broad.mit.edu	37	7	91503926	91503926	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	91503926	G	G	91503926	3	3	246	1	0	0	0	0	1	0	0	0	9925	1609	56	5	1021	5	MTERF	7	91503926	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10	3708723	91503926	67634737	31	15700											
MCM7	4176	broad.mit.edu;ucsc.edu	37	7	99693479	99693479	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	99693479	C	C	99693479	3	2	246	1	0	0	0	0	1	0	0	0	9399	1464	51	3	666	3	MCM7	7	99693479	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10	8189553	99693479	59445184	32	15701											
PNPLA8	50640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	108143077	108143077	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	108143077	T	A	108143077	3	1	246	1	0	0	0	0	1	0	0	0	12178	1406	49	5	1160	5	PNPLA8	7	108143077	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10	8449598	108143077	50995586	33	15702											
PRSS1	5644	broad.mit.edu;hgsc.bcm.edu	37	7	142458497	142458497	+	Silent	SNP	C	C	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	142458497	C	A	142458497	2	1	246	1	0	0	0	0	0	0	0	1	12624	784	28	4		4	PRSS1	7	142458497	Silent	SNP	C	TCGA-B8-4621-01A-01D-1501-10	34315420	142458497	16680166	34	15703											
C9orf93	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	15729739	15729739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	15729739	G	C	15729739	3	2	246	1	0	0	0	0	1	0	0	0	2508	933	33	4	2050	4	C9orf93	9	15729739	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10		15729739	125483692	35	15704											
TAF1L	138474	broad.mit.edu;hgsc.bcm.edu	37	9	32633474	32633474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	32633474	A	T	32633474	3	4	246	1	0	0	0	0	1	0	0	0	15535	449	16	5	3380	5	TAF1L	9	32633474	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10	16903735	32633474	108579957	36	15705											
HNRNPK	3190	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	86592692	86592692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	86592692	G	T	86592692	3	4	246	1	0	0	0	0	1	0	0	0	7276	1000	35	4	1417	4	HNRNPK	9	86592692	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	53959218	86592692	54620739	37	15706											
PTPDC1	138639	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	96863956	96863956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	96863956	G	A	96863956	3	1	246	1	0	0	0	0	1	0	0	0	12784	1377	48	2	2228	2	PTPDC1	9	96863956	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	10271264	96863956	44349475	38	15707											
GOLGA2	2801	hgsc.bcm.edu	37	9	131020812	131020812	+	Missense_Mutation	SNP	C	C	A	rs143073995	byfrequency	TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	131020812	C	A	131020812	3	1	246	1	0	0	0	0	1	0	0	0	6559	680	24	4	902	4	GOLGA2	9	131020812	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	34156856	131020812	10192619	39	15708											
ASS1	445	broad.mit.edu;hgsc.bcm.edu	37	9	133333871	133333871	+	Silent	SNP	C	C	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	133333871	C	A	133333871	2	1	246	1	0	0	0	0	0	0	0	1	1061	784	28	4		4	ASS1	9	133333871	Silent	SNP	C	TCGA-B8-4621-01A-01D-1501-10	2313059	133333871	7879560	40	15709											
KCNT1	57582	broad.mit.edu;hgsc.bcm.edu	37	9	138662896	138662896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	138662896	G	A	138662896	3	1	246	1	0	0	0	0	1	0	0	0	8098	1059	37	1	2033	1	KCNT1	9	138662896	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	5329025	138662896	2550535	41	15710											
FAM166A	401565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	140139762	140139762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	140139762	G	T	140139762	3	4	246	1	0	0	0	0	1	0	0	0	5485	1252	44	4	454	4	FAM166A	9	140139762	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	1476866	140139762	1073669	42	15711											
ADARB2	105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	1229304	1229304	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	1229304	G	-	1229304	7	5	246	1	0	1	0	1	0	0	0	0	283	1310	46	0	174	0	ADARB2	10	1229304	Frame_Shift_Del	DEL	G	TCGA-B8-4621-01A-01D-1501-10		1229304	134305443	43	15712											
PTEN	5728	hgsc.bcm.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	TACT	TACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	89720802	TACT	-	89720799	7	5	246	1	0	1	0	1	0	0	0	0	12748	1638	57	0	980	0	PTEN	10	89720799	Frame_Shift_Del	DEL	TACT	TCGA-B8-4621-01A-01D-1501-10	88491495	89720799	45813948	44	15713											
PPRC1	23082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	103898406	103898406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	103898406	G	A	103898406	3	1	246	1	0	0	0	0	1	0	0	0	12420	1029	36	2	383	2	PPRC1	10	103898406	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	14177607	103898406	31636341	45	15714											
PITX3	5309	hgsc.bcm.edu	37	10	103991455	103991456	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	103991456	-	G	103991455	7	5	246	1	0	1	1	0	0	0	0	0	11963	1580	55	0	705	0	PITX3	10	103991455	Frame_Shift_Ins	INS	-	TCGA-B8-4621-01A-01D-1501-10	93049	103991455	31543292	46	15715											
ZNF195	7748	broad.mit.edu;ucsc.edu	37	11	3380467	3380467	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	3380467	G	G	3380467	3	3	246	1	0	0	0	0	1	0	0	0	17770	304	11	3	122	3	ZNF195	11	3380467	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10		3380467	131626049	47	15716											
CAT	847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	34482847	34482847	+	Missense_Mutation	SNP	A	A	G	rs148712764	by1000genomes	TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	34482847	A	G	34482847	3	3	246	1	0	0	0	0	1	0	0	0	2688	101	4	3	1140	3	CAT	11	34482847	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10	31102380	34482847	100523669	48	15717											
MAPK8IP1	9479	hgsc.bcm.edu;ucsc.edu	37	11	45925694	45925694	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	45925694	G	C	45925694	3	2	246	1	0	0	0	0	1	0	0	0	9291	1175	41	4	1674	4	MAPK8IP1	11	45925694	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	11442847	45925694	89080822	49	15718											
CLCF1	23529	hgsc.bcm.edu;ucsc.edu	37	11	67135087	67135089	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	CCA	CCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	67135089	CCA	-	67135087	7	5	246	1	0	1	0	1	0	0	0	0	3463	624	22	0	658	0	CLCF1	11	67135087	In_Frame_Del	DEL	CCA	TCGA-B8-4621-01A-01D-1501-10	21209393	67135087	67871429	50	15719											
PRDM10	56980	broad.mit.edu;hgsc.bcm.edu	37	11	129805103	129805103	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	129805103	C	G	129805103	3	3	246	1	0	0	0	0	1	0	0	0	12461	796	28	4	2488	4	PRDM10	11	129805103	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	62670016	129805103	5201413	51	15720											
ADAMTS8	11095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	130286146	130286146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	130286146	C	T	130286146	3	4	246	1	0	0	0	0	1	0	0	0	272	594	21	2	1517	2	ADAMTS8	11	130286146	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	481043	130286146	4720370	52	15721											
RAD52	5893	hgsc.bcm.edu;ucsc.edu	37	12	1042154	1042154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	1042154	A	-	1042154	7	5	246	1	0	1	0	1	0	0	0	0	13004	372	13	0	1229	0	RAD52	12	1042154	Frame_Shift_Del	DEL	A	TCGA-B8-4621-01A-01D-1501-10		1042154	132809741	53	15722											
MANSC1	54682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	12483330	12483330	+	Silent	SNP	T	T	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	12483330	T	A	12483330	2	1	246	1	0	0	0	0	0	0	0	1	9231	1683	59	5		5	MANSC1	12	12483330	Silent	SNP	T	TCGA-B8-4621-01A-01D-1501-10	11441176	12483330	121368565	54	15723											
SLCO1B3	28234	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21028191	21028191	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	21028191	G	C	21028191	3	2	246	1	0	0	0	0	1	0	0	0	14737	991	35	4	776	4	SLCO1B3	12	21028191	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	8544861	21028191	112823704	55	15724											
HSP90B1	7184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104341410	104341410	+	Splice_Site	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	104341410	G	A	104341410	5	1	246	1	0	0	0	0	0	0	1	0	7410	1014	35	2	2452	2	HSP90B1	12	104341410	Splice_Site	SNP	G	TCGA-B8-4621-01A-01D-1501-10	83313219	104341410	29510485	56	15725											
USP12	219333	broad.mit.edu;hgsc.bcm.edu	37	13	27680064	27680064	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	27680064	G	T	27680064	4	4	246	1	0	0	0	0	0	1	0	0	17055	1024	36	4	993	4	USP12	13	27680064	Nonsense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10		27680064	87489814	57	15726											
LECT1	11061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	53313233	53313233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	53313233	G	A	53313233	3	1	246	1	0	0	0	0	1	0	0	0	8719	1059	37	1	882	1	LECT1	13	53313233	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	25633169	53313233	61856645	58	15727											
SCEL	8796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	78130015	78130015	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	78130015	C	G	78130015	3	3	246	1	0	0	0	0	1	0	0	0	13901	855	30	4	7	4	SCEL	13	78130015	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	24816782	78130015	37039863	59	15728											
SLITRK1	114798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	84454858	84454858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	84454858	G	A	84454858	3	1	246	1	0	0	0	0	1	0	0	0	14755	1000	35	2	1309	2	SLITRK1	13	84454858	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	6324843	84454858	30715020	60	15729											
TINF2	26277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24709106	24709106	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	24709106	A	T	24709106	3	4	246	1	0	0	0	0	1	0	0	0	15935	14	1	5	106	5	TINF2	14	24709106	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10		24709106	82640434	61	15730											
C14orf106	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	45687640	45687640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	45687640	G	A	45687640	3	1	246	1	0	0	0	0	1	0	0	0	1740	1348	47	2	735	2	C14orf106	14	45687640	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	20978534	45687640	61661900	62	15731											
PNMA1	9240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74180283	74180283	+	Silent	SNP	A	A	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	74180283	A	G	74180283	2	3	246	1	0	0	0	0	0	0	0	1	12160	291	11	3		3	PNMA1	14	74180283	Silent	SNP	A	TCGA-B8-4621-01A-01D-1501-10	28492643	74180283	33169257	63	15732											
PACS2	23241	broad.mit.edu;ucsc.edu	37	14	105843135	105843135	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	105843135	T	T	105843135	3	4	246	1	0	0	0	0	1	0	0	0	11380	710	25	2	866	2	PACS2	14	105843135	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	31662852	105843135	1506405	64	15733											
UBR1	197131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43307885	43307885	+	Splice_Site	SNP	C	C	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	43307885	C	A	43307885	5	1	246	1	0	0	0	0	0	0	1	0	16913	521	18	4	2115	4	UBR1	15	43307885	Splice_Site	SNP	C	TCGA-B8-4621-01A-01D-1501-10		43307885	59223507	65	15734											
PAQR5	54852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	69672243	69672243	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	69672243	C	G	69672243	3	3	246	1	0	0	0	0	1	0	0	0	11445	680	24	4	79	4	PAQR5	15	69672243	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	26364358	69672243	32859149	66	15735											
THSD4	79875	hgsc.bcm.edu;ucsc.edu	37	15	71952920	71952920	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	71952920	G	-	71952920	7	5	246	1	0	1	0	1	0	0	0	0	15890	1348	47	0	1230	0	THSD4	15	71952920	Frame_Shift_Del	DEL	G	TCGA-B8-4621-01A-01D-1501-10	2280677	71952920	30578472	67	15736											
C15orf60	283677	hgsc.bcm.edu	37	15	73852255	73852255	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	73852255	T	A	73852255	3	1	246	1	0	0	0	0	1	0	0	0	1810	1767	61	5	821	5	C15orf60	15	73852255	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10	1899335	73852255	28679137	68	15737											
SLC28A1	9154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	85488371	85488371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	85488371	C	A	85488371	3	1	246	1	0	0	0	0	1	0	0	0	14544	825	29	4	2027	4	SLC28A1	15	85488371	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	11636116	85488371	17043021	69	15738											
TMEM8A	58986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	425200	425200	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	425200	T	A	425200	3	1	246	1	0	0	0	0	1	0	0	0	16226	1464	51	5	967	5	TMEM8A	16	425200	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10		425200	89929553	70	15739											
CRAMP1L	57585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1682305	1682305	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	1682305	G	C	1682305	3	2	246	1	0	0	0	0	1	0	0	0	3848	991	35	4	643	4	CRAMP1L	16	1682305	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	1257105	1682305	88672448	71	15740											
TRAF7	84231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2220688	2220688	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	2220688	C	G	2220688	3	3	246	1	0	0	0	0	1	0	0	0	16458	913	32	4	319	4	TRAF7	16	2220688	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	538383	2220688	88134065	72	15741											
CREBBP	1387	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3843626	3843626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	3843626	G	A	3843626	3	1	246	1	0	0	0	0	1	0	0	0	3863	956	33	2	6463	2	CREBBP	16	3843626	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	1622938	3843626	86511127	73	15742											
ARHGAP17	55114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	24942355	24942355	+	Silent	SNP	G	G	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	24942355	G	C	24942355	2	2	246	1	0	0	0	0	0	0	0	1	867	1219	43	4		4	ARHGAP17	16	24942355	Silent	SNP	G	TCGA-B8-4621-01A-01D-1501-10	21098729	24942355	65412398	74	15743											
ZDHHC1	29800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67440199	67440199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	67440199	C	A	67440199	3	1	246	1	0	0	0	0	1	0	0	0	17612	912	32	4	1337	4	ZDHHC1	16	67440199	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	42497844	67440199	22914554	75	15744											
CLEC18B	497190	broad.mit.edu	37	16	74444509	74444509	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	74444509	A	A	74444509	3	1	246	1	0	0	0	0	1	0	0	0	3505	1609	56	5	247	5	CLEC18B	16	74444509	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10	7004310	74444509	15910244	76	15745											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11786998	11786998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	11786998	C	A	11786998	3	1	246	1	0	0	0	0	1	0	0	0	4610	854	30	4	11124	4	DNAH9	17	11786998	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10		11786998	69408212	77	15746											
C17orf75	64149	broad.mit.edu;ucsc.edu	37	17	30669149	30669149	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	30669149	G	G	30669149	3	3	246	1	0	0	0	0	1	0	0	0	1882	304	11	3	1220	3	C17orf75	17	30669149	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10	18882151	30669149	50526061	78	15747											
BRIP1	83990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	59886033	59886033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	59886033	G	A	59886033	3	1	246	1	0	0	0	0	1	0	0	0	1516	1377	48	2	3092	2	BRIP1	17	59886033	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	29216884	59886033	21309177	79	15748											
BPTF	2186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	65960482	65960482	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	65960482	G	C	65960482	3	2	246	1	0	0	0	0	1	0	0	0	1497	1174	41	4	8900	4	BPTF	17	65960482	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	6074449	65960482	15234728	80	15749											
ABCA5	23461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	67298930	67298930	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	67298930	T	G	67298930	3	3	246	1	0	0	0	0	1	0	0	0	35	1609	56	5	4008	5	ABCA5	17	67298930	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10	1338448	67298930	13896280	81	15750											
GALK1	2584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73758818	73758818	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	-	73758818	T	-	73758818	7	5	246	1	0	1	0	1	0	0	0	0	6210	1609	56	0	434	0	GALK1	17	73758818	Frame_Shift_Del	DEL	T	TCGA-B8-4621-01A-01D-1501-10	6459888	73758818	7436392	82	15751											
C19orf21	126353	broad.mit.edu	37	19	757468	757468	+	Silent	SNP	C	A	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	757468	A	A	757468	2	1	246	1	0	0	0	0	0	0	0	1	1915	726	26	4		4	C19orf21	19	757468	Silent	SNP	C	TCGA-B8-4621-01A-01D-1501-10		757468	58371515	83	15752											
LILRA6	79168	broad.mit.edu;hgsc.bcm.edu	37	19	54744308	54744308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	54744308	C	T	54744308	3	4	246	1	0	0	0	0	1	0	0	0	8796	536	19	1	357	1	LILRA6	19	54744308	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	53986840	54744308	4384675	84	15753											
ACSS2	55902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33501198	33501198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	G	33501198	A	G	33501198	3	3	246	1	0	0	0	0	1	0	0	0	189	217	8	3	483	3	ACSS2	20	33501198	Missense_Mutation	SNP	A	TCGA-B8-4621-01A-01D-1501-10		33501198	29524322	85	15754											
ACTR5	79913	broad.mit.edu;ucsc.edu	37	20	37396132	37396132	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	37396132	A	A	37396132	3	1	246	1	0	0	0	0	1	0	0	0	215	796	28	4	1489	4	ACTR5	20	37396132	Missense_Mutation	SNP	C	TCGA-B8-4621-01A-01D-1501-10	3894934	37396132	25629388	86	15755											
DHX35	60625	hgsc.bcm.edu;ucsc.edu	37	20	37623522	37623523	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	37623523	-	C	37623522	7	5	246	1	0	1	1	0	0	0	0	0	4510	289	10	0	671	0	DHX35	20	37623522	Frame_Shift_Ins	INS	-	TCGA-B8-4621-01A-01D-1501-10	227390	37623522	25401998	87	15756											
TCEA2	6919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62698282	62698282	+	Silent	SNP	G	G	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	62698282	G	C	62698282	2	2	246	1	0	0	0	0	0	0	0	1	15680	1161	41	4		4	TCEA2	20	62698282	Silent	SNP	G	TCGA-B8-4621-01A-01D-1501-10	25074760	62698282	327238	88	15757											
SYNJ1	8867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34042650	34042650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	C	34042650	T	C	34042650	3	2	246	1	0	0	0	0	1	0	0	0	15464	1493	52	3	3059	3	SYNJ1	21	34042650	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-1501-10		34042650	14087245	89	15758											
PCNT	5116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47783470	47783470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	A	47783470	G	A	47783470	3	1	246	1	0	0	0	0	1	0	0	0	11597	1175	41	2	2284	2	PCNT	21	47783470	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	13740820	47783470	346425	90	15759											
HUWE1	10075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53579648	53579648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	53579648	G	T	53579648	3	4	246	1	0	0	0	0	1	0	0	0	7468	1328	46	4	4515	4	HUWE1	23	53579648	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10		53579648	101690912	91	15760											
MAGEA10	4109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151303310	151303310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4621-01A-01D-1501-10	TCGA-B8-4621-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4a9d9213-c3e8-4603-8a56-45319446f269	238fdc67-ba8b-4f35-a1bd-a91c03192dd5	T	151303310	G	T	151303310	3	4	246	1	0	0	0	0	1	0	0	0	9171	1252	44	4	330	4	MAGEA10	23	151303310	Missense_Mutation	SNP	G	TCGA-B8-4621-01A-01D-1501-10	97723662	151303310	3967250	92	15761											
VHL	7428	hgsc.bcm.edu	37	3	10183752	10183752	+	Missense_Mutation	SNP	T	T	G	rs5030803		TCGA-B8-4621-01A-01D-2102-10	TCGA-B8-4621-10A-01W-1528-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	7b65cc53-f34c-4b46-afd9-55f08baac99f	fb9db263-63a1-45e6-94af-843d0e8225b0	G	10183752	T	G	10183752	3	3	247	1	0	0	0	0	1	0	0	0	17174	1667	58	5	223	5	VHL	3	10183752	Missense_Mutation	SNP	T	TCGA-B8-4621-01A-01D-2102-10		10183752	187838678	1	15762											
PRKCZ	5590	hgsc.bcm.edu	37	1	2066743	2066743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	2066743	A	G	2066743	3	3	248	1	0	0	0	0	1	0	0	0	12527	391	14	3	395	3	PRKCZ	1	2066743	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10		2066743	247183878	1	15763											
PRAMEF12	390999	hgsc.bcm.edu	37	1	12837463	12837463	+	Silent	SNP	C	C	T	rs112368379	by1000genomes	TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	12837463	C	T	12837463	2	4	248	1	0	0	0	0	0	0	0	1	12438	639	23	1		1	PRAMEF12	1	12837463	Silent	SNP	C	TCGA-B8-4622-01A-02D-1361-10	10770720	12837463	236413158	2	15764											
SEPN1	57190	hgsc.bcm.edu	37	1	26135162	26135162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	26135162	T	C	26135162	3	2	248	1	0	0	0	0	1	0	0	0	14069	1609	56	3	647	3	SEPN1	1	26135162	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	13297699	26135162	223115459	3	15765											
C1orf91	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32686772	32686772	+	Silent	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	32686772	C	T	32686772	2	4	248	1	0	0	0	0	0	0	0	1	2070	564	20	2		2	C1orf91	1	32686772	Silent	SNP	C	TCGA-B8-4622-01A-02D-1361-10	6551610	32686772	216563849	4	15766											
TMEM69	51249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46159076	46159076	+	Silent	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	46159076	C	A	46159076	2	1	248	1	0	0	0	0	0	0	0	1	16210	581	21	4		4	TMEM69	1	46159076	Silent	SNP	C	TCGA-B8-4622-01A-02D-1361-10	13472304	46159076	203091545	5	15767											
USP24	23358	hgsc.bcm.edu	37	1	55549489	55549489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	55549489	T	G	55549489	3	3	248	1	0	0	0	0	1	0	0	0	17067	1841	64	5	1072	5	USP24	1	55549489	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	9390413	55549489	193701132	6	15768											
RPF1	80135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	84962024	84962024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	84962024	A	G	84962024	3	3	248	1	0	0	0	0	1	0	0	0	13559	363	13	3	1009	3	RPF1	1	84962024	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	29412535	84962024	164288597	7	15769											
CCBL2	56267	hgsc.bcm.edu	37	1	89434445	89434445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	89434445	C	T	89434445	3	4	248	1	0	0	0	0	1	0	0	0	2735	681	24	2	1197	2	CCBL2	1	89434445	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	4472421	89434445	159816176	8	15770											
CNN3	1266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	95368739	95368739	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	95368739	A	C	95368739	3	2	248	1	0	0	0	0	1	0	0	0	3613	449	16	5	824	5	CNN3	1	95368739	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	5934294	95368739	153881882	9	15771											
GNAI3	2773	hgsc.bcm.edu	37	1	110134682	110134682	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	110134682	G	T	110134682	4	4	248	1	0	0	0	0	0	1	0	0	6513	943	33	4	922	4	GNAI3	1	110134682	Nonsense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	14765943	110134682	139115939	10	15772											
RGL1	23179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183891413	183891413	+	Silent	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	183891413	C	T	183891413	2	4	248	1	0	0	0	0	0	0	0	1	13289	912	32	2		2	RGL1	1	183891413	Silent	SNP	C	TCGA-B8-4622-01A-02D-1361-10	73756731	183891413	65359208	11	15773											
CDC42EP3	10602	hgsc.bcm.edu	37	2	37873389	37873389	+	Silent	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	37873389	T	A	37873389	2	1	248	1	0	0	0	0	0	0	0	1	3079	1422	50	5		5	CDC42EP3	2	37873389	Silent	SNP	T	TCGA-B8-4622-01A-02D-1361-10		37873389	205325984	12	15774											
C2orf61	285051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	47382357	47382357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	47382357	A	G	47382357	3	3	248	1	0	0	0	0	1	0	0	0	2182	304	11	3	755	3	C2orf61	2	47382357	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	9508968	47382357	195817016	13	15775											
IMMT	10989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	86385746	86385746	+	Silent	SNP	A	A	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	86385746	A	T	86385746	2	4	248	1	0	0	0	0	0	0	0	1	7725	291	11	5		5	IMMT	2	86385746	Silent	SNP	A	TCGA-B8-4622-01A-02D-1361-10	39003389	86385746	156813627	14	15776											
TMEM131	23505	hgsc.bcm.edu;ucsc.edu	37	2	98412694	98412694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	98412694	C	A	98412694	3	1	248	1	0	0	0	0	1	0	0	0	16056	913	32	4	2520	4	TMEM131	2	98412694	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	12026948	98412694	144786679	15	15777											
SAP130	79595	hgsc.bcm.edu	37	2	128775310	128775310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	128775310	G	T	128775310	3	4	248	1	0	0	0	0	1	0	0	0	13844	1232	43	4	2957	4	SAP130	2	128775310	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	30362616	128775310	114424063	16	15778											
ZDBF2	57683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	207174280	207174280	+	Silent	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	207174280	G	T	207174280	2	4	248	1	0	0	0	0	0	0	0	1	17611	1045	37	4		4	ZDBF2	2	207174280	Silent	SNP	G	TCGA-B8-4622-01A-02D-1361-10	78398970	207174280	36025093	17	15779											
ZDBF2	57683	hgsc.bcm.edu	37	2	207175938	207175938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	207175938	A	G	207175938	3	3	248	1	0	0	0	0	1	0	0	0	17611	14	1	3	6696	3	ZDBF2	2	207175938	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	1658	207175938	36023435	18	15780											
SPHKAP	80309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228973613	228973613	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	228973613	A	T	228973613	3	4	248	1	0	0	0	0	1	0	0	0	15060	40	2	5	4961	5	SPHKAP	2	228973613	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	21797675	228973613	14225760	19	15781											
MST1R	4486	hgsc.bcm.edu	37	3	49936537	49936537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	49936537	T	C	49936537	3	2	248	1	0	0	0	0	1	0	0	0	9898	1464	51	3	2888	3	MST1R	3	49936537	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10		49936537	148085893	20	15782											
PBRM1	55193	hgsc.bcm.edu	37	3	52623117	52623117	+	Silent	SNP	G	G	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	52623117	G	C	52623117	2	2	248	1	0	0	0	0	0	0	0	1	11498	929	33	4		4	PBRM1	3	52623117	Silent	SNP	G	TCGA-B8-4622-01A-02D-1361-10	2686580	52623117	145399313	21	15783											
MUC4	4585	hgsc.bcm.edu	37	3	195506747	195506747	+	Missense_Mutation	SNP	C	C	T	rs62282470	by1000genomes	TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	195506747	C	T	195506747	3	4	248	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195506747	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	142883630	195506747	2515683	22	15784											
TBC1D19	55296	hgsc.bcm.edu;ucsc.edu	37	4	26755448	26755448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	26755448	C	T	26755448	3	4	248	1	0	0	0	0	1	0	0	0	15619	710	25	2	1520	2	TBC1D19	4	26755448	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10		26755448	164398828	23	15785											
GABRA4	2557	hgsc.bcm.edu	37	4	46930578	46930578	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	46930578	T	A	46930578	3	1	248	1	0	0	0	0	1	0	0	0	6170	1838	64	5	339	5	GABRA4	4	46930578	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	20175130	46930578	144223698	24	15786											
MAML3	55534	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	140811637	140811637	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	140811637	T	A	140811637	3	1	248	1	0	0	0	0	1	0	0	0	9214	1725	60	5	2471	5	MAML3	4	140811637	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	93881059	140811637	50342639	25	15787											
ZNF827	152485	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	146824164	146824164	+	Silent	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	146824164	G	A	146824164	2	1	248	1	0	0	0	0	0	0	0	1	18192	962	34	2		2	ZNF827	4	146824164	Silent	SNP	G	TCGA-B8-4622-01A-02D-1361-10	6012527	146824164	44330112	26	15788											
MATR3	9782	hgsc.bcm.edu	37	5	138653359	138653360	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	-	138653360	AG	-	138653359	7	5	248	1	0	1	0	1	0	0	0	0	9344	407	15	0	1279	0	MATR3	5	138653359	Frame_Shift_Del	DEL	AG	TCGA-B8-4622-01A-02D-1361-10		138653359	42261901	27	15789											
TTBK1	84630	hgsc.bcm.edu	37	6	43251671	43251671	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	43251671	A	T	43251671	3	4	248	1	0	0	0	0	1	0	0	0	16688	159	6	5	3243	5	TTBK1	6	43251671	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10		43251671	127863396	28	15790											
HCRTR2	3062	broad.mit.edu;hgsc.bcm.edu	37	6	55128616	55128616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	55128616	G	A	55128616	3	1	248	1	0	0	0	0	1	0	0	0	7009	1058	37	1	772	1	HCRTR2	6	55128616	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	11876945	55128616	115986451	29	15791											
COL9A1	1297	hgsc.bcm.edu;ucsc.edu	37	6	70942325	70942325	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	70942325	T	A	70942325	4	1	248	1	0	0	0	0	0	1	0	0	3709	1763	61	5	313	5	COL9A1	6	70942325	Nonsense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	15813709	70942325	100172742	30	15792											
COX7A2	1347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	75950931	75950931	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	75950931	A	C	75950931	3	2	248	1	0	0	0	0	1	0	0	0	3782	98	4	5	194	5	COX7A2	6	75950931	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	5008606	75950931	95164136	31	15793											
RBM16	0	hgsc.bcm.edu	37	6	155153505	155153505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	155153505	T	C	155153505	3	2	248	1	0	0	0	0	1	0	0	0	13131	1406	49	3	2870	3	RBM16	6	155153505	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	79202574	155153505	15961562	32	15794											
SLC22A2	6582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160668236	160668236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	160668236	A	G	160668236	3	3	248	1	0	0	0	0	1	0	0	0	14463	333	12	3	758	3	SLC22A2	6	160668236	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	5514731	160668236	10446831	33	15795											
WIPI2	26100	broad.mit.edu;hgsc.bcm.edu	37	7	5269291	5269291	+	Missense_Mutation	SNP	G	G	A	rs147945082	byfrequency	TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	5269291	G	A	5269291	3	1	248	1	0	0	0	0	1	0	0	0	17383	1058	37	1	1254	1	WIPI2	7	5269291	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10		5269291	153869372	34	15796											
NUPL2	11097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23240017	23240017	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	23240017	T	A	23240017	3	1	248	1	0	0	0	0	1	0	0	0	10782	1783	62	5	951	5	NUPL2	7	23240017	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	17970726	23240017	135898646	35	15797											
GCC1	79571	broad.mit.edu;hgsc.bcm.edu	37	7	127225152	127225152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	127225152	G	A	127225152	3	1	248	1	0	0	0	0	1	0	0	0	6292	942	33	2	2250	2	GCC1	7	127225152	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	103985135	127225152	31913511	36	15798											
EPHA1	2041	broad.mit.edu;hgsc.bcm.edu	37	7	143095137	143095137	+	Silent	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	143095137	T	A	143095137	2	1	248	1	0	0	0	0	0	0	0	1	5167	1509	53	5		5	EPHA1	7	143095137	Silent	SNP	T	TCGA-B8-4622-01A-02D-1361-10	15869985	143095137	16043526	37	15799											
RARRES2	5919	hgsc.bcm.edu	37	7	150037577	150037577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	150037577	G	T	150037577	3	4	248	1	0	0	0	0	1	0	0	0	13069	1116	39	4	385	4	RARRES2	7	150037577	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	6942440	150037577	9101086	38	15800											
GALNT11	63917	hgsc.bcm.edu	37	7	151818714	151818714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	151818714	G	A	151818714	3	1	248	1	0	0	0	0	1	0	0	0	6216	1348	47	2	1821	2	GALNT11	7	151818714	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	1781137	151818714	7319949	39	15801											
CSMD1	64478	hgsc.bcm.edu;ucsc.edu	37	8	2808659	2808659	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	G	T	G	G	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	2808659	G	T	2808659	4	4	248	1	0	0	0	0	0	1	0	0	3946	1059	37	4	536	4	CSMD1	8	2808659	Nonsense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10		2808659	143555363	40	15802											
PRKDC	5591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	48730110	48730110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	48730110	G	T	48730110	3	4	248	1	0	0	0	0	1	0	0	0	12531	942	33	4	3004	4	PRKDC	8	48730110	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	45921451	48730110	97633912	41	15803											
HNF4G	3174	hgsc.bcm.edu	37	8	76468287	76468287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	76468287	A	T	76468287	3	4	248	1	0	0	0	0	1	0	0	0	7261	14	1	5	708	5	HNF4G	8	76468287	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	27738177	76468287	69895735	42	15804											
ZFHX4	79776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	77618282	77618282	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	77618282	C	A	77618282	4	1	248	1	0	0	0	0	0	1	0	0	17647	489	17	4	1961	4	ZFHX4	8	77618282	Nonsense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	1149995	77618282	68745740	43	15805											
RGS22	26166	hgsc.bcm.edu	37	8	100990285	100990285	+	Silent	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	100990285	G	A	100990285	2	1	248	1	0	0	0	0	0	0	0	1	13318	933	33	2		2	RGS22	8	100990285	Silent	SNP	G	TCGA-B8-4622-01A-02D-1361-10	23372003	100990285	45373737	44	15806											
TM7SF4	0	broad.mit.edu;hgsc.bcm.edu	37	8	105361304	105361304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	105361304	T	A	105361304	3	1	248	1	0	0	0	0	1	0	0	0	15988	1609	56	5	526	5	TM7SF4	8	105361304	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	4371019	105361304	41002718	45	15807											
KDM4C	23081	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	7015920	7015920	+	Silent	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	7015920	G	A	7015920	2	1	248	1	0	0	0	0	0	0	0	1	8137	1132	40	1		1	KDM4C	9	7015920	Silent	SNP	G	TCGA-B8-4622-01A-02D-1361-10		7015920	134197511	46	15808											
PRSS3	5646	hgsc.bcm.edu;ucsc.edu	37	9	33798574	33798574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	33798574	G	A	33798574	3	1	248	1	0	0	0	0	1	0	0	0	12632	971	34	2	774	2	PRSS3	9	33798574	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	26782654	33798574	107414857	47	15809											
AUH	549	hgsc.bcm.edu	37	9	94087667	94087667	+	Silent	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	94087667	T	C	94087667	2	2	248	1	0	0	0	0	0	0	0	1	1219	1548	54	3		3	AUH	9	94087667	Silent	SNP	T	TCGA-B8-4622-01A-02D-1361-10	60289093	94087667	47125764	48	15810											
C9orf102	0	hgsc.bcm.edu;ucsc.edu	37	9	98728933	98728933	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	98728933	T	A	98728933	3	1	248	1	0	0	0	0	1	0	0	0	2447	1809	63	5	2124	5	C9orf102	9	98728933	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	4641266	98728933	42484498	49	15811											
TSC1	7248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	135797252	135797252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	135797252	T	C	135797252	3	2	248	1	0	0	0	0	1	0	0	0	16617	1464	51	3	2945	3	TSC1	9	135797252	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	37068319	135797252	5416179	50	15812											
PSAP	5660	hgsc.bcm.edu;ucsc.edu	37	10	73579621	73579621	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	73579621	T	A	73579621	4	1	248	1	0	0	0	0	0	1	0	0	12653	1792	62	5	552	5	PSAP	10	73579621	Nonsense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10		73579621	61955126	51	15813											
ECD	11319	hgsc.bcm.edu	37	10	74914026	74914026	+	Silent	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	74914026	T	G	74914026	2	3	248	1	0	0	0	0	0	0	0	1	4890	1770	62	5		5	ECD	10	74914026	Silent	SNP	T	TCGA-B8-4622-01A-02D-1361-10	1334405	74914026	60620721	52	15814											
PLAU	5328	hgsc.bcm.edu	37	10	75675058	75675058	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	75675058	T	G	75675058	3	3	248	1	0	0	0	0	1	0	0	0	12029	1829	64	5	1092	5	PLAU	10	75675058	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	761032	75675058	59859689	53	15815											
SUFU	51684	hgsc.bcm.edu	37	10	104357037	104357037	+	Silent	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	104357037	A	G	104357037	2	3	248	1	0	0	0	0	0	0	0	1	15380	262	10	3		3	SUFU	10	104357037	Silent	SNP	A	TCGA-B8-4622-01A-02D-1361-10	28681979	104357037	31177710	54	15816											
BRSK2	9024	hgsc.bcm.edu	37	11	1459547	1459547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	1459547	G	T	1459547	3	4	248	1	0	0	0	0	1	0	0	0	1526	933	33	4	208	4	BRSK2	11	1459547	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10		1459547	133546969	55	15817											
GAS2	2620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	22833447	22833447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	22833447	G	A	22833447	3	1	248	1	0	0	0	0	1	0	0	0	6252	1145	40	1	853	1	GAS2	11	22833447	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	21373900	22833447	112173069	56	15818											
ZBTB3	79842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62520590	62520590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	62520590	G	A	62520590	3	1	248	1	0	0	0	0	1	0	0	0	17546	1174	41	2	1031	2	ZBTB3	11	62520590	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	39687143	62520590	72485926	57	15819											
RECQL	5965	hgsc.bcm.edu;ucsc.edu	37	12	21624427	21624427	+	Silent	SNP	A	A	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	21624427	A	T	21624427	2	4	248	1	0	0	0	0	0	0	0	1	13214	291	11	5		5	RECQL	12	21624427	Silent	SNP	A	TCGA-B8-4622-01A-02D-1361-10		21624427	112227468	58	15820											
NUP107	57122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	69136217	69136217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	69136217	C	A	69136217	3	1	248	1	0	0	0	0	1	0	0	0	10760	594	21	4	2863	4	NUP107	12	69136217	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	47511790	69136217	64715678	59	15821											
NR2C1	7181	hgsc.bcm.edu	37	12	95445694	95445694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	95445694	C	A	95445694	3	1	248	1	0	0	0	0	1	0	0	0	10629	565	20	4	1108	4	NR2C1	12	95445694	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	26309477	95445694	38406201	60	15822											
ZMYM5	9205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	20398642	20398642	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	20398642	T	A	20398642	3	1	248	1	0	0	0	0	1	0	0	0	17715	1435	50	5	28	5	ZMYM5	13	20398642	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10		20398642	94771236	61	15823											
C1QTNF9	338872	hgsc.bcm.edu	37	13	24892967	24892967	+	Missense_Mutation	SNP	C	C	T	rs71429861	bycluster;byfrequency	TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	24892967	C	T	24892967	3	4	248	1	0	0	0	0	1	0	0	0	1972	536	19	1	184	1	C1QTNF9	13	24892967	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	4494325	24892967	90276911	62	15824											
BRCA2	675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32972539	32972539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	32972539	G	A	32972539	3	1	248	1	0	0	0	0	1	0	0	0	1501	1203	42	2	9991	2	BRCA2	13	32972539	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	8079572	32972539	82197339	63	15825											
COL4A1	1282	hgsc.bcm.edu;ucsc.edu	37	13	110822087	110822087	+	Silent	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	110822087	A	G	110822087	2	3	248	1	0	0	0	0	0	0	0	1	3691	291	11	3		3	COL4A1	13	110822087	Silent	SNP	A	TCGA-B8-4622-01A-02D-1361-10	77849548	110822087	4347791	64	15826											
REC8	9985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24642238	24642238	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	24642238	C	T	24642238	4	4	248	1	0	0	0	0	0	1	0	0	13212	595	21	2	266	2	REC8	14	24642238	Nonsense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10		24642238	82707302	65	15827											
PCNX	22990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	71543031	71543031	+	Silent	SNP	A	A	G	rs144508419	bycluster;byfrequency;by1000genomes	TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	71543031	A	G	71543031	2	3	248	1	0	0	0	0	0	0	0	1	11598	117	5	3		3	PCNX	14	71543031	Silent	SNP	A	TCGA-B8-4622-01A-02D-1361-10	46900793	71543031	35806509	66	15828											
ALDH6A1	4329	hgsc.bcm.edu	37	14	74539005	74539005	+	Silent	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	74539005	A	G	74539005	2	3	248	1	0	0	0	0	0	0	0	1	503	126	5	3		3	ALDH6A1	14	74539005	Silent	SNP	A	TCGA-B8-4622-01A-02D-1361-10	2995974	74539005	32810535	67	15829											
LTBP2	4053	hgsc.bcm.edu;ucsc.edu	37	14	74983607	74983607	+	Silent	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	74983607	C	A	74983607	2	1	248	1	0	0	0	0	0	0	0	1	9081	610	22	4		4	LTBP2	14	74983607	Silent	SNP	C	TCGA-B8-4622-01A-02D-1361-10	444602	74983607	32365933	68	15830											
CASC5	57082	hgsc.bcm.edu	37	15	40937258	40937258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	40937258	A	C	40937258	3	2	248	1	0	0	0	0	1	0	0	0	2665	11	1	5	5998	5	CASC5	15	40937258	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10		40937258	61594134	69	15831											
LRRC57	255252	hgsc.bcm.edu	37	15	42837375	42837375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	42837375	A	C	42837375	3	2	248	1	0	0	0	0	1	0	0	0	9020	72	3	5	149	5	LRRC57	15	42837375	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	1900117	42837375	59694017	70	15832											
GOLGA6A	342096	hgsc.bcm.edu	37	15	74367323	74367323	+	Silent	SNP	C	C	T	rs3743208		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	74367323	C	T	74367323	2	4	248	1	0	0	0	0	0	0	0	1	6564	755	27	1		1	GOLGA6A	15	74367323	Silent	SNP	C	TCGA-B8-4622-01A-02D-1361-10	31529948	74367323	28164069	71	15833											
MPI	4351	hgsc.bcm.edu	37	15	75185068	75185068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	75185068	A	G	75185068	3	3	248	1	0	0	0	0	1	0	0	0	9736	333	12	3	426	3	MPI	15	75185068	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	817745	75185068	27346324	72	15834											
ZNF592	9640	hgsc.bcm.edu	37	15	85327156	85327156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	85327156	C	T	85327156	3	4	248	1	0	0	0	0	1	0	0	0	18034	739	26	2	1252	2	ZNF592	15	85327156	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	10142088	85327156	17204236	73	15835											
BLM	641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91346812	91346812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	91346812	C	A	91346812	3	1	248	1	0	0	0	0	1	0	0	0	1445	477	17	4	3486	4	BLM	15	91346812	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	6019656	91346812	11184580	74	15836											
CEMP1	752014	hgsc.bcm.edu	37	16	2580881	2580881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	2580881	C	T	2580881	3	4	248	1	0	0	0	0	1	0	0	0	3226	507	18	2	553	2	CEMP1	16	2580881	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10		2580881	87773872	75	15837											
TFAP4	7023	hgsc.bcm.edu	37	16	4312339	4312339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	4312339	T	C	4312339	3	2	248	1	0	0	0	0	1	0	0	0	15804	1821	63	3	696	3	TFAP4	16	4312339	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	1731458	4312339	86042414	76	15838											
CKLF	51192	hgsc.bcm.edu	37	16	66599818	66599818	+	Silent	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	66599818	T	C	66599818	2	2	248	1	0	0	0	0	0	0	0	1	3449	1673	58	3		3	CKLF	16	66599818	Silent	SNP	T	TCGA-B8-4622-01A-02D-1361-10	62287479	66599818	23754935	77	15839											
ABCC3	8714	hgsc.bcm.edu;ucsc.edu	37	17	48745263	48745263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	48745263	C	A	48745263	3	1	248	1	0	0	0	0	1	0	0	0	54	623	22	4	1809	4	ABCC3	17	48745263	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10		48745263	32449947	78	15840											
KCNJ2	3759	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	68171453	68171453	+	Silent	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	68171453	T	A	68171453	2	1	248	1	0	0	0	0	0	0	0	1	8058	1596	56	5		5	KCNJ2	17	68171453	Silent	SNP	T	TCGA-B8-4622-01A-02D-1361-10	19426190	68171453	13023757	79	15841											
UNK	85451	hgsc.bcm.edu	37	17	73805879	73805879	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	73805879	T	G	73805879	3	3	248	1	0	0	0	0	1	0	0	0	17012	1841	64	5	381	5	UNK	17	73805879	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	5634426	73805879	7389331	80	15842											
DSG2	1829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	29102086	29102086	+	Silent	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	29102086	G	A	29102086	2	1	248	1	0	0	0	0	0	0	0	1	4779	962	34	2		2	DSG2	18	29102086	Silent	SNP	G	TCGA-B8-4622-01A-02D-1361-10		29102086	48975162	81	15843											
AP3D1	8943	hgsc.bcm.edu	37	19	2132487	2132487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	2132487	T	G	2132487	3	3	248	1	0	0	0	0	1	0	0	0	746	1841	64	5	3278	5	AP3D1	19	2132487	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10		2132487	56996496	82	15844											
NDUFA7	4701	hgsc.bcm.edu	37	19	8381465	8381465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	8381465	T	C	8381465	3	2	248	1	0	0	0	0	1	0	0	0	10277	1696	59	3	183	3	NDUFA7	19	8381465	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	6248978	8381465	50747518	83	15845											
BEST2	54831	hgsc.bcm.edu	37	19	12867047	12867047	+	Silent	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	12867047	C	T	12867047	2	4	248	1	0	0	0	0	0	0	0	1	1405	489	17	2		2	BEST2	19	12867047	Silent	SNP	C	TCGA-B8-4622-01A-02D-1361-10	4485582	12867047	46261936	84	15846											
ATP1A3	478	hgsc.bcm.edu	37	19	42490052	42490052	+	Silent	SNP	T	T	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	42490052	T	A	42490052	2	1	248	1	0	0	0	0	0	0	0	1	1130	1567	55	5		5	ATP1A3	19	42490052	Silent	SNP	T	TCGA-B8-4622-01A-02D-1361-10	29623005	42490052	16638931	85	15847											
CNOT3	4849	hgsc.bcm.edu	37	19	54646856	54646856	+	Silent	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	C	54646856	T	C	54646856	2	2	248	1	0	0	0	0	0	0	0	1	3622	1710	59	3		3	CNOT3	19	54646856	Silent	SNP	T	TCGA-B8-4622-01A-02D-1361-10	12156804	54646856	4482127	86	15848											
ZSCAN1	284312	hgsc.bcm.edu	37	19	58563898	58563898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	58563898	C	A	58563898	3	1	248	1	0	0	0	0	1	0	0	0	18238	710	25	4	516	4	ZSCAN1	19	58563898	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	3917042	58563898	565085	87	15849											
ADAM33	80332	hgsc.bcm.edu;ucsc.edu	37	20	3657786	3657786	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	3657786	G	T	3657786	4	4	248	1	0	0	0	0	0	1	0	0	250	1059	37	4	2339	4	ADAM33	20	3657786	Nonsense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10		3657786	59367734	88	15850											
BFSP1	631	hgsc.bcm.edu;ucsc.edu	37	20	17477609	17477609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	17477609	G	A	17477609	3	1	248	1	0	0	0	0	1	0	0	0	1415	942	33	2	989	2	BFSP1	20	17477609	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1361-10	13819823	17477609	45547911	89	15851											
C20orf132	0	hgsc.bcm.edu	37	20	35776241	35776241	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	35776241	T	G	35776241	3	3	248	1	0	0	0	0	1	0	0	0	2088	1838	64	5	2054	5	C20orf132	20	35776241	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	18298632	35776241	27249279	90	15852											
MYBL2	4605	broad.mit.edu;hgsc.bcm.edu	37	20	42343846	42343846	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	42343846	C	T	42343846	4	4	248	1	0	0	0	0	0	1	0	0	10017	595	21	2	1947	2	MYBL2	20	42343846	Nonsense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10	6567605	42343846	20681674	91	15853											
ZNF70	7621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24086149	24086149	+	Silent	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	24086149	G	A	24086149	2	1	248	1	0	0	0	0	0	0	0	1	18115	987	35	2		2	ZNF70	22	24086149	Silent	SNP	G	TCGA-B8-4622-01A-02D-1361-10		24086149	27218417	92	15854											
CRYBB2	1415	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	25617408	25617408	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	25617408	T	G	25617408	3	3	248	1	0	0	0	0	1	0	0	0	3913	1432	50	5	14	5	CRYBB2	22	25617408	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	1531259	25617408	25687158	93	15855											
PICK1	9463	hgsc.bcm.edu;ucsc.edu	37	22	38469817	38469817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	38469817	A	T	38469817	3	4	248	1	0	0	0	0	1	0	0	0	11888	246	9	5	859	5	PICK1	22	38469817	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1361-10	12852409	38469817	12834749	94	15856											
NLGN4X	57502	hgsc.bcm.edu	37	X	5811180	5811180	+	Missense_Mutation	SNP	C	C	T	rs4017999		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	5811180	C	T	5811180	3	4	248	1	0	0	0	0	1	0	0	0	10471	768	27	1	325	1	NLGN4X	23	5811180	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1361-10		5811180	149459380	95	15857											
GPR64	10149	hgsc.bcm.edu	37	X	19025373	19025373	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	19025373	T	G	19025373	3	3	248	1	0	0	0	0	1	0	0	0	6712	1850	64	5	1424	5	GPR64	23	19025373	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	13214193	19025373	136245187	96	15858											
AKAP4	8852	hgsc.bcm.edu;ucsc.edu	37	X	49957015	49957015	+	Silent	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	T	49957015	G	T	49957015	2	4	248	1	0	0	0	0	0	0	0	1	453	987	35	4		4	AKAP4	23	49957015	Silent	SNP	G	TCGA-B8-4622-01A-02D-1361-10	30931642	49957015	105313545	97	15859											
TCEAL5	340543	broad.mit.edu;hgsc.bcm.edu	37	X	102529072	102529072	+	Silent	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	A	102529072	C	A	102529072	2	1	248	1	0	0	0	0	0	0	0	1	15686	813	29	4		4	TCEAL5	23	102529072	Silent	SNP	C	TCGA-B8-4622-01A-02D-1361-10	52572057	102529072	52741488	98	15860											
ZNF75D	7626	hgsc.bcm.edu	37	X	134425421	134425421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1361-10	TCGA-B8-4622-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	fb4c8eeb-e522-4042-974d-3c71b1905f96	f8f9ddaa-4efc-4043-b8e2-71ff67801a9d	G	134425421	T	G	134425421	3	3	248	1	0	0	0	0	1	0	0	0	18146	1763	61	5	871	5	ZNF75D	23	134425421	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1361-10	31896349	134425421	20845139	99	15861											
PTPRF	5792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44070946	44070946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	44070946	C	G	44070946	3	3	249	1	0	0	0	0	1	0	0	0	12814	893	31	4	3283	4	PTPRF	1	44070946	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1553-08		44070946	205179675	1	15862											
VAX2	25806	broad.mit.edu	37	2	71160067	71160067	+	Silent	SNP	G	A	A	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	A	71160067	A	A	71160067	2	1	249	1	0	0	0	0	0	0	0	1	17147	1074	38	1		1	VAX2	2	71160067	Silent	SNP	G	TCGA-B8-4622-01A-02D-1553-08		71160067	172039306	2	15863											
IL1RL2	8808	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	102851636	102851636	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	-	102851636	C	-	102851636	7	5	249	1	0	1	0	1	0	0	0	0	7671	507	18	0	1615	0	IL1RL2	2	102851636	Frame_Shift_Del	DEL	C	TCGA-B8-4622-01A-02D-1553-08	31691569	102851636	140347737	3	15864											
THSD7B	80731	hgsc.bcm.edu;ucsc.edu	37	2	137928375	137928375	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	-	137928375	T	-	137928375	7	5	249	1	0	1	0	1	0	0	0	0	15892	1490	52	0	1519	0	THSD7B	2	137928375	Frame_Shift_Del	DEL	T	TCGA-B8-4622-01A-02D-1553-08	35076739	137928375	105270998	4	15865											
SCG2	7857	hgsc.bcm.edu;ucsc.edu	37	2	224463149	224463149	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	-	224463149	G	-	224463149	7	5	249	1	0	1	0	1	0	0	0	0	13904	958	34	0	1005	0	SCG2	2	224463149	Frame_Shift_Del	DEL	G	TCGA-B8-4622-01A-02D-1553-08	86534774	224463149	18736224	5	15866											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47163990	47164005	+	Frame_Shift_Del	DEL	TTTGACCAAAGGGGAT	TTTGACCAAAGGGGAT	-	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	TTTGACCAAAGGGGAT	TTTGACCAAAGGGGAT	TTTGACCAAAGGGGAT	-	TTTGACCAAAGGGGAT	TTTGACCAAAGGGGAT	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	-	47164005	TTTGACCAAAGGGGAT	-	47163990	7	5	249	1	0	1	0	1	0	0	0	0	14144	1606	56	0	5634	0	SETD2	3	47163990	Frame_Shift_Del	DEL	TTTGACCAAAGGGGAT	TCGA-B8-4622-01A-02D-1553-08		47163990	150858440	6	15867											
AMOTL2	51421	hgsc.bcm.edu	37	3	134079242	134079243	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	C	134079243	-	C	134079242	7	5	249	1	0	1	1	0	0	0	0	0	584	1203	42	0	769	0	AMOTL2	3	134079242	Frame_Shift_Ins	INS	-	TCGA-B8-4622-01A-02D-1553-08	86915252	134079242	63943188	7	15868											
AADAC	13	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	151545364	151545364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	151545364	C	G	151545364	3	3	249	1	0	0	0	0	1	0	0	0	10	811	28	4	622	4	AADAC	3	151545364	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1553-08	17466122	151545364	46477066	8	15869											
MECOM	2122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	168833806	168833806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	A	168833806	C	A	168833806	3	1	249	1	0	0	0	0	1	0	0	0	9429	478	17	4	1905	4	MECOM	3	168833806	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1553-08	17288442	168833806	29188624	9	15870											
UGT2A3	79799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	69816847	69816847	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	69816847	T	G	69816847	3	3	249	1	0	0	0	0	1	0	0	0	16967	1493	52	5	975	5	UGT2A3	4	69816847	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1553-08		69816847	121337429	10	15871											
WDFY3	23001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	85742692	85742692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	85742692	C	G	85742692	3	3	249	1	0	0	0	0	1	0	0	0	17282	913	32	4	9719	4	WDFY3	4	85742692	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1553-08	15925845	85742692	105411584	11	15872											
PKHD1	5314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	51799018	51799018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	A	51799018	G	A	51799018	3	1	249	1	0	0	0	0	1	0	0	0	11978	1232	43	2	6376	2	PKHD1	6	51799018	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1553-08		51799018	119316049	12	15873											
ABCB5	340273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	20682904	20682904	+	Silent	SNP	A	A	C	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	C	20682904	A	C	20682904	2	2	249	1	0	0	0	0	0	0	0	1	44	295	11	5		5	ABCB5	7	20682904	Silent	SNP	A	TCGA-B8-4622-01A-02D-1553-08		20682904	138455759	13	15874											
PDE1C	5137	broad.mit.edu	37	7	32338297	32338304	+	Frame_Shift_Del	DEL	GGCGCTCC	-	-	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	GGCGCTCC	GGCGCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	-	32338304	-	-	32338297	7	5	249	1	0	1	0	1	0	0	0	0	11642	1363	47	0		0	PDE1C	7	32338297	Frame_Shift_Del	DEL	GGCGCTCC	TCGA-B8-4622-01A-02D-1553-08	11655393	32338297	126800366	14	15875											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82595325	82595325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	C	82595325	T	C	82595325	3	2	249	1	0	0	0	0	1	0	0	0	11590	1580	55	3	11754	3	PCLO	7	82595325	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1553-08	50257028	82595325	76543338	15	15876											
ZNF800	168850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127013660	127013660	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	-	127013660	G	-	127013660	7	5	249	1	0	1	0	1	0	0	0	0	18181	1000	35	0	272	0	ZNF800	7	127013660	Frame_Shift_Del	DEL	G	TCGA-B8-4622-01A-02D-1553-08	44418335	127013660	32125003	16	15877											
AHCYL2	23382	broad.mit.edu	37	7	128865042	128865042	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	-	128865042	-	-	128865042	7	5	249	1	0	1	0	1	0	0	0	0	411	739	26	0	127	0	AHCYL2	7	128865042	Frame_Shift_Del	DEL	C	TCGA-B8-4622-01A-02D-1553-08	1851382	128865042	30273621	17	15878											
AGAP3	116988	broad.mit.edu	37	7	150825758	150825758	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	C	150825758	C	C	150825758	3	2	249	1	0	0	0	0	1	0	0	0	369	159	6	5	1418	5	AGAP3	7	150825758	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1553-08	21960716	150825758	8312905	18	15879											
SLC22A11	55867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64337144	64337144	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	64337144	T	G	64337144	3	3	249	1	0	0	0	0	1	0	0	0	14455	1580	55	5	1437	5	SLC22A11	11	64337144	Missense_Mutation	SNP	T	TCGA-B8-4622-01A-02D-1553-08		64337144	70669372	19	15880											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108196255	108196255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	T	108196255	C	T	108196255	3	4	249	1	0	0	0	0	1	0	0	0	1109	565	20	2	6969	2	ATM	11	108196255	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1553-08	43859111	108196255	26810261	20	15881											
LTA4H	4048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	96414872	96414872	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	-	96414872	A	-	96414872	7	5	249	1	0	1	0	1	0	0	0	0	9076	372	13	0	1262	0	LTA4H	12	96414872	Frame_Shift_Del	DEL	A	TCGA-B8-4622-01A-02D-1553-08		96414872	37437023	21	15882											
GLT8D2	83468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104387219	104387219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	C	104387219	A	C	104387219	3	2	249	1	0	0	0	0	1	0	0	0	6477	243	9	5	226	5	GLT8D2	12	104387219	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1553-08	7972347	104387219	29464676	22	15883											
TDRD3	81550	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	61103273	61103273	+	Silent	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	61103273	A	G	61103273	2	3	249	1	0	0	0	0	0	0	0	1	15744	98	4	3		3	TDRD3	13	61103273	Silent	SNP	A	TCGA-B8-4622-01A-02D-1553-08		61103273	54066605	23	15884											
FAM155A	728215	broad.mit.edu;ucsc.edu	37	13	108518837	108518837	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	108518837	G	G	108518837	3	3	249	1	0	0	0	0	1	0	0	0	5469	912	32	4	1280	4	FAM155A	13	108518837	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1553-08	47415564	108518837	6651041	24	15885											
ZFYVE26	23503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	68234548	68234548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	68234548	C	G	68234548	3	3	249	1	0	0	0	0	1	0	0	0	17680	797	28	4	2004	4	ZFYVE26	14	68234548	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1553-08		68234548	39114992	25	15886											
SLC27A2	11001	hgsc.bcm.edu	37	15	50474899	50474900	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	T	50474900	-	T	50474899	7	5	249	1	0	1	1	0	0	0	0	0	14539	739	26	0	277	0	SLC27A2	15	50474899	Frame_Shift_Ins	INS	-	TCGA-B8-4622-01A-02D-1553-08		50474899	52056493	26	15887											
IGDCC3	9543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65621770	65621770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	T	65621770	G	T	65621770	3	4	249	1	0	0	0	0	1	0	0	0	7575	1165	41	4	289	4	IGDCC3	15	65621770	Missense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1553-08	15146871	65621770	36909622	27	15888											
TLE3	7090	hgsc.bcm.edu;ucsc.edu	37	15	70368448	70368448	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	-	70368448	A	-	70368448	7	5	249	1	0	1	0	1	0	0	0	0	15952	246	9	0	2098	0	TLE3	15	70368448	Frame_Shift_Del	DEL	A	TCGA-B8-4622-01A-02D-1553-08	4746678	70368448	32162944	28	15889											
CCNF	899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2506955	2506955	+	Silent	SNP	G	G	A	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	A	2506955	G	A	2506955	2	1	249	1	0	0	0	0	0	0	0	1	2924	1277	45	2		2	CCNF	16	2506955	Silent	SNP	G	TCGA-B8-4622-01A-02D-1553-08		2506955	87847798	29	15890											
KIAA0174	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71961539	71961539	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	71961539	C	G	71961539	3	3	249	1	0	0	0	0	1	0	0	0	8165	681	24	4	954	4	KIAA0174	16	71961539	Missense_Mutation	SNP	C	TCGA-B8-4622-01A-02D-1553-08	69454584	71961539	18393214	30	15891											
DNAH17	8632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76506511	76506511	+	Silent	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	T	76506511	G	T	76506511	2	4	249	1	0	0	0	0	0	0	0	1	4603	1161	41	4		4	DNAH17	17	76506511	Silent	SNP	G	TCGA-B8-4622-01A-02D-1553-08		76506511	4688699	31	15892											
C20orf94	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	10604013	10604013	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	T	10604013	G	T	10604013	4	4	249	1	0	0	0	0	0	1	0	0	2123	1059	37	4	1239	4	C20orf94	20	10604013	Nonsense_Mutation	SNP	G	TCGA-B8-4622-01A-02D-1553-08		10604013	52421507	32	15893											
NEFH	4744	broad.mit.edu;hgsc.bcm.edu	37	22	29879399	29879399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	29879399	A	G	29879399	3	3	249	1	0	0	0	0	1	0	0	0	10321	246	9	3	925	3	NEFH	22	29879399	Missense_Mutation	SNP	A	TCGA-B8-4622-01A-02D-1553-08		29879399	21425167	33	15894											
KLF8	11279	broad.mit.edu	37	X	56310756	56310756	+	Silent	SNP	T	G	G	novel		TCGA-B8-4622-01A-02D-1553-08	TCGA-B8-4622-11A-01D-1553-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9713397b-0a7c-4fc6-a7b3-042a56d11d1e	153d19e5-72d1-478f-818e-42cc4ac138e2	G	56310756	G	G	56310756	2	3	249	1	0	0	0	0	0	0	0	1	8359	1606	56	5		5	KLF8	23	56310756	Silent	SNP	T	TCGA-B8-4622-01A-02D-1553-08		56310756	98959804	34	15895											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16257994	16257994	+	Silent	SNP	T	T	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	16257994	T	C	16257994	2	2	250	1	0	0	0	0	0	0	0	1	15050	1567	55	3		3	SPEN	1	16257994	Silent	SNP	T	TCGA-B8-5158-01A-01D-1421-08		16257994	232992627	1	15896	209	2									
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16257995	16257995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	16257995	G	A	16257995	3	1	250	1	0	0	0	0	1	0	0	0	15050	1290	45	2	5302	2	SPEN	1	16257995	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08	1	16257995	232992626	2	15897	209	2									
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16262076	16262076	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	16262076	C	G	16262076	3	3	250	1	0	0	0	0	1	0	0	0	15050	594	21	4	9383	4	SPEN	1	16262076	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	4081	16262076	232988545	3	15898											
BSDC1	55108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32842063	32842063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	32842063	A	T	32842063	3	4	250	1	0	0	0	0	1	0	0	0	1530	188	7	5	348	5	BSDC1	1	32842063	Missense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08	16579987	32842063	216408558	4	15899											
EPHA10	284656	broad.mit.edu;hgsc.bcm.edu	37	1	38192872	38192872	+	Silent	SNP	C	C	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	38192872	C	A	38192872	2	1	250	1	0	0	0	0	0	0	0	1	5168	494	18	4		4	EPHA10	1	38192872	Silent	SNP	C	TCGA-B8-5158-01A-01D-1421-08	5350809	38192872	211057749	5	15900											
FAM73A	374986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78325069	78325069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	78325069	C	A	78325069	3	1	250	1	0	0	0	0	1	0	0	0	5624	827	29	4	1224	4	FAM73A	1	78325069	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	40132197	78325069	170925552	6	15901											
S100A10	6281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151955649	151955649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	151955649	C	A	151955649	3	1	250	1	0	0	0	0	1	0	0	0	13785	855	30	4	13	4	S100A10	1	151955649	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	73630580	151955649	97294972	7	15902											
FLG	2312	broad.mit.edu;hgsc.bcm.edu	37	1	152283060	152283060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	152283060	G	T	152283060	3	4	250	1	0	0	0	0	1	0	0	0	5929	962	34	4	7887	4	FLG	1	152283060	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08	327411	152283060	96967561	8	15903											
COPA	1314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160261217	160261217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	160261217	T	C	160261217	3	2	250	1	0	0	0	0	1	0	0	0	3729	1812	63	3	358	3	COPA	1	160261217	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08	7978157	160261217	88989404	9	15904											
FAM5B	57795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	177199237	177199237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	177199237	G	T	177199237	3	4	250	1	0	0	0	0	1	0	0	0	5600	1348	47	4	227	4	FAM5B	1	177199237	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08	16938020	177199237	72051384	10	15905											
LAMC2	3918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183204764	183204764	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	183204764	T	G	183204764	4	3	250	1	0	0	0	0	0	1	0	0	8622	1500	52	5	2417	5	LAMC2	1	183204764	Nonsense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08	6005527	183204764	66045857	11	15906											
PRKD3	23683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	37486752	37486752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	37486752	G	T	37486752	3	4	250	1	0	0	0	0	1	0	0	0	12530	971	34	4	569	4	PRKD3	2	37486752	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08		37486752	205712621	12	15907											
RIF1	55183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152300220	152300220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	152300220	T	G	152300220	3	3	250	1	0	0	0	0	1	0	0	0	13372	1432	50	5	2049	5	RIF1	2	152300220	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08	114813468	152300220	90899153	13	15908											
C2orf62	375307	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219232614	219232614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	219232614	T	G	219232614	3	3	250	1	0	0	0	0	1	0	0	0	2183	1821	63	5	1129	5	C2orf62	2	219232614	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08	66932394	219232614	23966759	14	15909											
HDLBP	3069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	242179325	242179325	+	Silent	SNP	G	G	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	242179325	G	A	242179325	2	1	250	1	0	0	0	0	0	0	0	1	7032	1164	41	2		2	HDLBP	2	242179325	Silent	SNP	G	TCGA-B8-5158-01A-01D-1421-08	22946711	242179325	1020048	15	15910											
PBRM1	55193	broad.mit.edu	37	3	52678806	52678806	+	Splice_Site	SNP	C	T	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	52678806	T	T	52678806	5	4	250	1	0	0	0	0	0	0	1	0	11498	695	24	2	4179	2	PBRM1	3	52678806	Splice_Site	SNP	C	TCGA-B8-5158-01A-01D-1421-08		52678806	145343624	16	15911											
LRIG1	26018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	66502055	66502055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	66502055	T	C	66502055	3	2	250	1	0	0	0	0	1	0	0	0	8951	1638	57	3	3056	3	LRIG1	3	66502055	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08	13823249	66502055	131520375	17	15912											
GTF2E1	2960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	120495384	120495384	+	Silent	SNP	C	C	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	120495384	C	T	120495384	2	4	250	1	0	0	0	0	0	0	0	1	6863	813	29	2		2	GTF2E1	3	120495384	Silent	SNP	C	TCGA-B8-5158-01A-01D-1421-08	53993329	120495384	77527046	18	15913											
NAF1	92345	broad.mit.edu;ucsc.edu	37	4	164050358	164050358	+	Silent	SNP	A	G	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	164050358	G	G	164050358	2	3	250	1	0	0	0	0	0	0	0	1	10147	291	11	3		3	NAF1	4	164050358	Silent	SNP	A	TCGA-B8-5158-01A-01D-1421-08		164050358	27103918	19	15914											
TRIM23	373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	64907630	64907630	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	64907630	C	G	64907630	3	3	250	1	0	0	0	0	1	0	0	0	16509	835	29	4	1378	4	TRIM23	5	64907630	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08		64907630	116007630	20	15915											
PCDHB13	56123	broad.mit.edu;hgsc.bcm.edu	37	5	140594137	140594137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	140594137	C	T	140594137	3	4	250	1	0	0	0	0	1	0	0	0	11545	855	30	2	444	2	PCDHB13	5	140594137	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	75686507	140594137	40321123	21	15916											
CAGE1	285782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7373597	7373597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	7373597	C	A	7373597	3	1	250	1	0	0	0	0	1	0	0	0	2574	477	17	4	1210	4	CAGE1	6	7373597	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08		7373597	163741470	22	15917											
HIST1H2AM	8336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27860781	27860781	+	Silent	SNP	C	C	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	27860781	C	G	27860781	2	3	250	1	0	0	0	0	0	0	0	1	7146	639	23	4		4	HIST1H2AM	6	27860781	Silent	SNP	C	TCGA-B8-5158-01A-01D-1421-08	20487184	27860781	143254286	23	15918											
OR2H2	7932	hgsc.bcm.edu	37	6	29555969	29555969	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	-	29555969	T	-	29555969	7	5	250	1	0	1	0	1	0	0	0	0	11009	1551	54	0	250	0	OR2H2	6	29555969	Frame_Shift_Del	DEL	T	TCGA-B8-5158-01A-01D-1421-08	1695188	29555969	141559098	24	15919											
RNF216	54476	broad.mit.edu	37	7	5752486	5752486	+	Silent	SNP	G	T	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	5752486	T	T	5752486	2	4	250	1	0	0	0	0	0	0	0	1	13493	1277	45	4		4	RNF216	7	5752486	Silent	SNP	G	TCGA-B8-5158-01A-01D-1421-08		5752486	153386177	25	15920											
CCDC129	223075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	31682989	31682989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	31682989	A	G	31682989	3	3	250	1	0	0	0	0	1	0	0	0	2766	363	13	3	2043	3	CCDC129	7	31682989	Missense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08	25930503	31682989	127455674	26	15921											
ZMIZ2	83637	broad.mit.edu	37	7	44801378	44801378	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	44801378	G	G	44801378	3	3	250	1	0	0	0	0	1	0	0	0	17709	767	27	4	1508	4	ZMIZ2	7	44801378	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	13118389	44801378	114337285	27	15922											
CFTR	1080	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	117199625	117199625	+	Silent	SNP	C	C	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	117199625	C	A	117199625	2	1	250	1	0	0	0	0	0	0	0	1	3296	697	25	4		4	CFTR	7	117199625	Silent	SNP	C	TCGA-B8-5158-01A-01D-1421-08	72398247	117199625	41939038	28	15923											
ZNF398	57541	broad.mit.edu	37	7	148876816	148876816	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	148876816	A	A	148876816	3	1	250	1	0	0	0	0	1	0	0	0	17897	1783	62	5	1874	5	ZNF398	7	148876816	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08	31677191	148876816	10261847	29	15924											
AGAP3	116988	broad.mit.edu;hgsc.bcm.edu	37	7	150784022	150784022	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	150784022	A	C	150784022	3	2	250	1	0	0	0	0	1	0	0	0	369	43	2	5	196	5	AGAP3	7	150784022	Missense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08	1907206	150784022	8354641	30	15925											
CHPF2	54480	hgsc.bcm.edu	37	7	150934826	150934827	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	150934827	-	G	150934826	7	5	250	1	0	1	1	0	0	0	0	0	3371	759	27	0	1392	0	CHPF2	7	150934826	Frame_Shift_Ins	INS	-	TCGA-B8-5158-01A-01D-1421-08	150804	150934826	8203837	31	15926											
CNTNAP3	79937	broad.mit.edu	37	9	39085772	39085772	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	39085772	C	C	39085772	3	2	250	1	0	0	0	0	1	0	0	0	3650	101	4	5	479	5	CNTNAP3	9	39085772	Missense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08		39085772	102127659	32	15927											
LAMC3	10319	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133911635	133911635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	133911635	G	C	133911635	3	2	250	1	0	0	0	0	1	0	0	0	8623	1116	39	4	906	4	LAMC3	9	133911635	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08	94825863	133911635	7301796	33	15928											
GRIN1	2902	broad.mit.edu	37	9	140040311	140040311	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	140040311	T	T	140040311	3	4	250	1	0	0	0	0	1	0	0	0	6785	797	28	2	537	2	GRIN1	9	140040311	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	6128676	140040311	1173120	34	15929											
DIP2C	22982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	375466	375466	+	Silent	SNP	G	G	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	375466	G	C	375466	2	2	250	1	0	0	0	0	0	0	0	1	4531	1103	39	4		4	DIP2C	10	375466	Silent	SNP	G	TCGA-B8-5158-01A-01D-1421-08		375466	135159281	35	15930											
NMT2	9397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	15154856	15154856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	15154856	T	C	15154856	3	2	250	1	0	0	0	0	1	0	0	0	10511	1725	60	3	231	3	NMT2	10	15154856	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08	14779390	15154856	120379891	36	15931											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	10	89717762	89717762	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	89717762	A	T	89717762	4	4	250	1	0	0	0	0	0	1	0	0	12748	131	5	5	813	5	PTEN	10	89717762	Nonsense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08	74562906	89717762	45816985	37	15932											
B4GALNT4	338707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	372684	372684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	372684	T	C	372684	3	2	250	1	0	0	0	0	1	0	0	0	1269	1464	51	3	288	3	B4GALNT4	11	372684	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08		372684	134633832	38	15933											
VPS11	55823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118940211	118940211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	118940211	C	G	118940211	3	3	250	1	0	0	0	0	1	0	0	0	17200	854	30	4	405	4	VPS11	11	118940211	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	118567527	118940211	16066305	39	15934											
TSPAN31	6302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	58140428	58140428	+	Silent	SNP	G	G	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	58140428	G	C	58140428	2	2	250	1	0	0	0	0	0	0	0	1	16658	1335	47	4		4	TSPAN31	12	58140428	Silent	SNP	G	TCGA-B8-5158-01A-01D-1421-08		58140428	75711467	40	15935											
CDK8	1024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	26974672	26974672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	26974672	C	T	26974672	3	4	250	1	0	0	0	0	1	0	0	0	3152	594	21	2	1054	2	CDK8	13	26974672	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08		26974672	88195206	41	15936											
BIVM	54841	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	103474191	103474191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	103474191	T	C	103474191	3	2	250	1	0	0	0	0	1	0	0	0	1441	1609	56	3	814	3	BIVM	13	103474191	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08	76499519	103474191	11695687	42	15937	210	2									
BIVM	54841	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	103474193	103474193	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	103474193	A	T	103474193	3	4	250	1	0	0	0	0	1	0	0	0	1441	449	16	5	816	5	BIVM	13	103474193	Missense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08	2	103474193	11695685	43	15938	210	2									
SALL2	6297	broad.mit.edu	37	14	21992408	21992408	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	21992408	A	A	21992408	3	1	250	1	0	0	0	0	1	0	0	0	13824	565	20	4	1573	4	SALL2	14	21992408	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08		21992408	85357132	44	15939											
FSCB	84075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	44975274	44975274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	44975274	G	T	44975274	3	4	250	1	0	0	0	0	1	0	0	0	6073	1203	42	4	1564	4	FSCB	14	44975274	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08	22982866	44975274	62374266	45	15940											
NEO1	4756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	73590937	73590937	+	Silent	SNP	T	T	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	73590937	T	C	73590937	2	2	250	1	0	0	0	0	0	0	0	1	10343	1490	52	3		3	NEO1	15	73590937	Silent	SNP	T	TCGA-B8-5158-01A-01D-1421-08		73590937	28940455	46	15941											
BCL2A1	597	broad.mit.edu;hgsc.bcm.edu	37	15	80253472	80253472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	80253472	C	T	80253472	3	4	250	1	0	0	0	0	1	0	0	0	1366	826	29	2	66	2	BCL2A1	15	80253472	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	6662535	80253472	22277920	47	15942											
FOXC2	2303	broad.mit.edu	37	16	86601069	86601069	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	86601069	A	A	86601069	3	1	250	1	0	0	0	0	1	0	0	0	6002	1203	42	2	130	2	FOXC2	16	86601069	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08		86601069	3753684	48	15943											
NUP88	4927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5290385	5290385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	5290385	G	A	5290385	3	1	250	1	0	0	0	0	1	0	0	0	10778	929	33	2	275	2	NUP88	17	5290385	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08		5290385	75904825	49	15944											
TMEM102	284114	broad.mit.edu	37	17	7340786	7340786	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	-	7340786	-	-	7340786	7	5	250	1	0	1	0	1	0	0	0	0	16029	991	35	0	1494	0	TMEM102	17	7340786	Frame_Shift_Del	DEL	G	TCGA-B8-5158-01A-01D-1421-08	2050401	7340786	73854424	50	15945											
MYH2	4620	broad.mit.edu;hgsc.bcm.edu	37	17	10426861	10426861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	10426861	C	A	10426861	3	1	250	1	0	0	0	0	1	0	0	0	10042	796	28	4	417	4	MYH2	17	10426861	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	3086075	10426861	70768349	51	15946											
NLE1	54475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33464021	33464021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	33464021	T	G	33464021	3	3	250	1	0	0	0	0	1	0	0	0	10467	1681	58	5	658	5	NLE1	17	33464021	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08	23037160	33464021	47731189	52	15947											
SEPT4	5414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56603081	56603081	+	Silent	SNP	C	C	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	56603081	C	A	56603081	2	1	250	1	0	0	0	0	0	0	0	1	14079	610	22	4		4	SEPT4	17	56603081	Silent	SNP	C	TCGA-B8-5158-01A-01D-1421-08	23139060	56603081	24592129	53	15948											
KIAA0195	9772	broad.mit.edu;hgsc.bcm.edu	37	17	73485346	73485346	+	Splice_Site	SNP	G	G	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	73485346	G	A	73485346	5	1	250	1	0	0	0	0	0	0	1	0	8167	956	33	2	790	2	KIAA0195	17	73485346	Splice_Site	SNP	G	TCGA-B8-5158-01A-01D-1421-08	16882265	73485346	7709864	54	15949											
MYO5B	4645	broad.mit.edu;hgsc.bcm.edu	37	18	47432966	47432966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	47432966	A	T	47432966	3	4	250	1	0	0	0	0	1	0	0	0	10086	333	12	5	3397	5	MYO5B	18	47432966	Missense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08		47432966	30644282	55	15950											
ZNF407	55628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	72346178	72346178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	72346178	A	C	72346178	3	2	250	1	0	0	0	0	1	0	0	0	17899	304	11	5	3205	5	ZNF407	18	72346178	Missense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08	24913212	72346178	5731070	56	15951											
ZNF491	126069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11917136	11917136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	A	11917136	T	A	11917136	3	1	250	1	0	0	0	0	1	0	0	0	17954	1638	57	5	370	5	ZNF491	19	11917136	Missense_Mutation	SNP	T	TCGA-B8-5158-01A-01D-1421-08		11917136	47211847	57	15952											
MACROD2	140733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	15967789	15967789	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	15967789	A	C	15967789	3	2	250	1	0	0	0	0	1	0	0	0	9153	14	1	5	1197	5	MACROD2	20	15967789	Missense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08		15967789	47057731	58	15953											
MYBL2	4605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	42344673	42344673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	42344673	G	T	42344673	3	4	250	1	0	0	0	0	1	0	0	0	10017	962	34	4	2103	4	MYBL2	20	42344673	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08	26376884	42344673	20680847	59	15954											
ZFP64	55734	hgsc.bcm.edu;ucsc.edu	37	20	50776871	50776871	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	-	50776871	C	-	50776871	7	5	250	1	0	1	0	1	0	0	0	0	17664	797	28	0	2690	0	ZFP64	20	50776871	Frame_Shift_Del	DEL	C	TCGA-B8-5158-01A-01D-1421-08	8432198	50776871	12248649	60	15955											
LAMA5	3911	broad.mit.edu;hgsc.bcm.edu	37	20	60921136	60921136	+	Splice_Site	SNP	C	C	T	rs112620160	alternate_allele	TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	60921136	C	T	60921136	5	4	250	1	0	0	0	0	0	0	1	0	8616	550	19	1	9953	1	LAMA5	20	60921136	Splice_Site	SNP	C	TCGA-B8-5158-01A-01D-1421-08	10144265	60921136	2104384	61	15956											
EP300	2033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	41574794	41574794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	G	41574794	A	G	41574794	3	3	250	1	0	0	0	0	1	0	0	0	5150	246	9	3	7201	3	EP300	22	41574794	Missense_Mutation	SNP	A	TCGA-B8-5158-01A-01D-1421-08		41574794	9729772	62	15957											
SREBF2	6721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42273293	42273293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	T	42273293	C	T	42273293	3	4	250	1	0	0	0	0	1	0	0	0	15154	913	32	2	1477	2	SREBF2	22	42273293	Missense_Mutation	SNP	C	TCGA-B8-5158-01A-01D-1421-08	698499	42273293	9031273	63	15958											
FBLN1	2192	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45937233	45937233	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	45937233	G	C	45937233	3	2	250	1	0	0	0	0	1	0	0	0	5705	991	35	4	1081	4	FBLN1	22	45937233	Missense_Mutation	SNP	G	TCGA-B8-5158-01A-01D-1421-08	3663940	45937233	5367333	64	15959											
SBF1	6305	broad.mit.edu;hgsc.bcm.edu	37	22	50903272	50903272	+	Silent	SNP	T	T	C	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	C	50903272	T	C	50903272	2	2	250	1	0	0	0	0	0	0	0	1	13871	1722	60	3		3	SBF1	22	50903272	Silent	SNP	T	TCGA-B8-5158-01A-01D-1421-08	4966039	50903272	401294	65	15960											
RBMX	27316	hgsc.bcm.edu	37	X	135961587	135961587	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-5158-01A-01D-1421-08	TCGA-B8-5158-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9d730534-98e7-464e-945c-5964cec5362a	696dff10-52f1-4ab8-8d28-7b33864e1cea	-	135961587	G	-	135961587	7	5	250	1	0	1	0	1	0	0	0	0	13164	1392	48	0	1262	0	RBMX	23	135961587	Frame_Shift_Del	DEL	G	TCGA-B8-5158-01A-01D-1421-08		135961587	19308973	66	15961											
RERE	473	broad.mit.edu	37	1	8420358	8420358	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	-	8420358	-	-	8420358	7	5	251	1	0	1	0	1	0	0	0	0	13244	710	25	0	1515	0	RERE	1	8420358	Frame_Shift_Del	DEL	C	TCGA-B8-5159-01A-01D-1421-08		8420358	240830263	1	15962											
MRPS15	64960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36926350	36926350	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	36926350	G	A	36926350	4	1	251	1	0	0	0	0	0	1	0	0	9832	1386	48	2	461	2	MRPS15	1	36926350	Nonsense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	28505992	36926350	212324271	2	15963											
C1orf123	54987	broad.mit.edu;hgsc.bcm.edu	37	1	53686011	53686011	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	53686011	G	C	53686011	3	2	251	1	0	0	0	0	1	0	0	0	1993	1048	37	4	498	4	C1orf123	1	53686011	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	16759661	53686011	195564610	3	15964											
INADL	10207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62330119	62330119	+	Silent	SNP	A	A	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	62330119	A	G	62330119	2	3	251	1	0	0	0	0	0	0	0	1	7738	146	6	3		3	INADL	1	62330119	Silent	SNP	A	TCGA-B8-5159-01A-01D-1421-08	8644108	62330119	186920502	4	15965											
LRRC40	55631	broad.mit.edu;hgsc.bcm.edu	37	1	70671195	70671195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	70671195	T	C	70671195	3	2	251	1	0	0	0	0	1	0	0	0	9005	1580	55	3	1839	3	LRRC40	1	70671195	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08	8341076	70671195	178579426	5	15966											
THEM5	284486	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151820729	151820729	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	151820729	C	G	151820729	3	3	251	1	0	0	0	0	1	0	0	0	15871	912	32	4	251	4	THEM5	1	151820729	Missense_Mutation	SNP	C	TCGA-B8-5159-01A-01D-1421-08	81149534	151820729	97429892	6	15967											
PAPPA2	60676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	176738772	176738772	+	Silent	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	176738772	G	C	176738772	2	2	251	1	0	0	0	0	0	0	0	1	11440	1190	42	4		4	PAPPA2	1	176738772	Silent	SNP	G	TCGA-B8-5159-01A-01D-1421-08	24918043	176738772	72511849	7	15968											
ZFP36L2	678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	43452470	43452470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	43452470	A	G	43452470	3	3	251	1	0	0	0	0	1	0	0	0	17659	188	7	3	1015	3	ZFP36L2	2	43452470	Missense_Mutation	SNP	A	TCGA-B8-5159-01A-01D-1421-08		43452470	199746903	8	15969											
CCDC88A	55704	broad.mit.edu	37	2	55562094	55562094	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	55562094	G	G	55562094	3	3	251	1	0	0	0	0	1	0	0	0	2865	1606	56	5	3824	5	CCDC88A	2	55562094	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08	12109624	55562094	187637279	9	15970											
ATP6V1B1	525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	71190718	71190718	+	Silent	SNP	C	C	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	71190718	C	A	71190718	2	1	251	1	0	0	0	0	0	0	0	1	1178	845	30	4		4	ATP6V1B1	2	71190718	Silent	SNP	C	TCGA-B8-5159-01A-01D-1421-08	15628624	71190718	172008655	10	15971											
ZNF638	27332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	71658543	71658543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	71658543	T	C	71658543	3	2	251	1	0	0	0	0	1	0	0	0	18067	1667	58	3	5835	3	ZNF638	2	71658543	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08	467825	71658543	171540830	11	15972											
TMEM131	23505	broad.mit.edu	37	2	98375417	98375417	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	98375417	T	T	98375417	3	4	251	1	0	0	0	0	1	0	0	0	16056	1348	47	4	353	4	TMEM131	2	98375417	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	26716874	98375417	144823956	12	15973											
ZDBF2	57683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	207174466	207174466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	207174466	A	T	207174466	3	4	251	1	0	0	0	0	1	0	0	0	17611	69	3	5	5224	5	ZDBF2	2	207174466	Missense_Mutation	SNP	A	TCGA-B8-5159-01A-01D-1421-08	108799049	207174466	36024907	13	15974											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191536	10191536	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	10191536	A	T	10191536	4	4	251	1	0	0	0	0	0	1	0	0	17174	296	11	5	539	5	VHL	3	10191536	Nonsense_Mutation	SNP	A	TCGA-B8-5159-01A-01D-1421-08		10191536	187830894	14	15975											
TRIM71	131405	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	32932071	32932071	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	32932071	G	C	32932071	3	2	251	1	0	0	0	0	1	0	0	0	16556	1029	36	4	1389	4	TRIM71	3	32932071	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	22740535	32932071	165090359	15	15976											
UBP1	7342	broad.mit.edu;hgsc.bcm.edu	37	3	33481335	33481335	+	Silent	SNP	G	G	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	33481335	G	T	33481335	2	4	251	1	0	0	0	0	0	0	0	1	16907	987	35	4		4	UBP1	3	33481335	Silent	SNP	G	TCGA-B8-5159-01A-01D-1421-08	549264	33481335	164541095	16	15977											
PIK3CA	5290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	178921334	178921334	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	178921334	T	A	178921334	4	1	251	1	0	0	0	0	0	1	0	0	11920	1413	49	5	830	5	PIK3CA	3	178921334	Nonsense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08	145439999	178921334	19101096	17	15978											
LPHN3	23284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	62812747	62812747	+	Silent	SNP	C	C	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	62812747	C	T	62812747	2	4	251	1	0	0	0	0	0	0	0	1	8924	813	29	2		2	LPHN3	4	62812747	Silent	SNP	C	TCGA-B8-5159-01A-01D-1421-08		62812747	128341529	18	15979											
ETFDH	2110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	159627355	159627355	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	159627355	G	C	159627355	3	2	251	1	0	0	0	0	1	0	0	0	5273	1291	45	4	1342	4	ETFDH	4	159627355	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	96814608	159627355	31526921	19	15980											
CTNND2	1501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	10988319	10988319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	10988319	G	T	10988319	3	4	251	1	0	0	0	0	1	0	0	0	4022	1000	35	4	442	4	CTNND2	5	10988319	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08		10988319	169926941	20	15981											
CCDC125	202243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	68581285	68581285	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	68581285	G	C	68581285	4	2	251	1	0	0	0	0	0	1	0	0	2763	1294	45	4	434	4	CCDC125	5	68581285	Nonsense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	57592966	68581285	112333975	21	15982											
GPR98	84059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	90086882	90086882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	90086882	G	C	90086882	3	2	251	1	0	0	0	0	1	0	0	0	6728	1175	41	4	14514	4	GPR98	5	90086882	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	21505597	90086882	90828378	22	15983											
SLC22A5	6584	hgsc.bcm.edu	37	5	131705726	131705728	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	-	131705728	TCT	-	131705726	7	5	251	1	0	1	0	1	0	0	0	0	14470	1435	50	0	64	0	SLC22A5	5	131705726	In_Frame_Del	DEL	TCT	TCGA-B8-5159-01A-01D-1421-08	41618844	131705726	49209534	23	15984											
PHF15	23338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	133914214	133914214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	133914214	G	C	133914214	3	2	251	1	0	0	0	0	1	0	0	0	11833	1203	42	4	1618	4	PHF15	5	133914214	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	2208488	133914214	47001046	24	15985											
CATSPER3	347732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134344575	134344575	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	134344575	A	C	134344575	3	2	251	1	0	0	0	0	1	0	0	0	2691	98	4	5	738	5	CATSPER3	5	134344575	Missense_Mutation	SNP	A	TCGA-B8-5159-01A-01D-1421-08	430361	134344575	46570685	25	15986											
TRIM10	10107	hgsc.bcm.edu	37	6	30126177	30126177	+	Missense_Mutation	SNP	G	G	T	rs61735038	bycluster;alternate_allele	TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	30126177	G	T	30126177	3	4	251	1	0	0	0	0	1	0	0	0	16498	1159	40	4	798	4	TRIM10	6	30126177	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08		30126177	140988890	26	15987											
LAMA4	3910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	112575349	112575349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	112575349	C	G	112575349	3	3	251	1	0	0	0	0	1	0	0	0	8615	739	26	4	5787	4	LAMA4	6	112575349	Missense_Mutation	SNP	C	TCGA-B8-5159-01A-01D-1421-08	82449172	112575349	58539718	27	15988											
TSGA14	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	130044447	130044447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	130044447	T	C	130044447	3	2	251	1	0	0	0	0	1	0	0	0	16632	1725	60	3	765	3	TSGA14	7	130044447	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08		130044447	29094216	28	15989											
RP1	6101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	55533660	55533660	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	55533660	A	C	55533660	3	2	251	1	0	0	0	0	1	0	0	0	13545	275	10	5	136	5	RP1	8	55533660	Missense_Mutation	SNP	A	TCGA-B8-5159-01A-01D-1421-08		55533660	90830362	29	15990											
ZFAT	57623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	135524782	135524782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	135524782	T	G	135524782	3	3	251	1	0	0	0	0	1	0	0	0	17644	1606	56	5	446	5	ZFAT	8	135524782	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08	79991122	135524782	10839240	30	15991											
ZBTB5	9925	broad.mit.edu;ucsc.edu	37	9	37441467	37441467	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	37441467	C	C	37441467	3	2	251	1	0	0	0	0	1	0	0	0	17563	43	2	5	955	5	ZBTB5	9	37441467	Missense_Mutation	SNP	A	TCGA-B8-5159-01A-01D-1421-08		37441467	103771964	31	15992											
KIAA0913	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75553698	75553698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	75553698	T	G	75553698	3	3	251	1	0	0	0	0	1	0	0	0	8207	1722	60	5	2567	5	KIAA0913	10	75553698	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08		75553698	59981049	32	15993											
SMC3	9126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	112341762	112341762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	112341762	T	C	112341762	3	2	251	1	0	0	0	0	1	0	0	0	14797	1522	53	3	663	3	SMC3	10	112341762	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08	36788064	112341762	23192985	33	15994											
MICALCL	84953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	12315780	12315780	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	12315780	T	A	12315780	3	1	251	1	0	0	0	0	1	0	0	0	9579	1667	58	5	808	5	MICALCL	11	12315780	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08		12315780	122690736	34	15995											
MRGPRX4	117196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18194921	18194921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	18194921	G	T	18194921	3	4	251	1	0	0	0	0	1	0	0	0	9776	1377	48	4	120	4	MRGPRX4	11	18194921	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	5879141	18194921	116811595	35	15996											
DHCR7	1717	broad.mit.edu;hgsc.bcm.edu	37	11	71153366	71153366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	71153366	G	C	71153366	3	2	251	1	0	0	0	0	1	0	0	0	4479	1348	47	4	1092	4	DHCR7	11	71153366	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	52958445	71153366	63853150	36	15997											
TYR	7299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	88911150	88911151	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	88911151	-	A	88911150	7	5	251	1	0	1	1	0	0	0	0	0	16825	1580	55	0	31	0	TYR	11	88911150	Frame_Shift_Ins	INS	-	TCGA-B8-5159-01A-01D-1421-08	17757784	88911150	46095366	37	15998											
PPFIBP1	8496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	27835400	27835400	+	Silent	SNP	T	T	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	27835400	T	C	27835400	2	2	251	1	0	0	0	0	0	0	0	1	12320	1432	50	3		3	PPFIBP1	12	27835400	Silent	SNP	T	TCGA-B8-5159-01A-01D-1421-08		27835400	106016495	38	15999											
NACA	4666	broad.mit.edu;hgsc.bcm.edu	37	12	57110097	57110097	+	Silent	SNP	G	G	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	57110097	G	A	57110097	2	1	251	1	0	0	0	0	0	0	0	1	10140	1161	41	2		2	NACA	12	57110097	Silent	SNP	G	TCGA-B8-5159-01A-01D-1421-08	29274697	57110097	76741798	39	16000											
NEDD1	121441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	97303613	97303613	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	97303613	G	C	97303613	3	2	251	1	0	0	0	0	1	0	0	0	10316	1174	41	4	103	4	NEDD1	12	97303613	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	40193516	97303613	36548282	40	16001											
CAMKK2	10645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121712085	121712085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	121712085	G	C	121712085	3	2	251	1	0	0	0	0	1	0	0	0	2609	1232	43	4	1595	4	CAMKK2	12	121712085	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	24408472	121712085	12139810	41	16002											
ZCCHC8	55596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	122962402	122962402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	122962402	A	G	122962402	3	3	251	1	0	0	0	0	1	0	0	0	17606	217	8	3	800	3	ZCCHC8	12	122962402	Missense_Mutation	SNP	A	TCGA-B8-5159-01A-01D-1421-08	1250317	122962402	10889493	42	16003											
TMEM132B	114795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	126135244	126135244	+	Silent	SNP	C	C	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	126135244	C	T	126135244	2	4	251	1	0	0	0	0	0	0	0	1	16058	767	27	1		1	TMEM132B	12	126135244	Silent	SNP	C	TCGA-B8-5159-01A-01D-1421-08	3172842	126135244	7716651	43	16004											
ELF1	1997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	41525466	41525466	+	Silent	SNP	T	T	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	41525466	T	A	41525466	2	1	251	1	0	0	0	0	0	0	0	1	5055	1768	61	5		5	ELF1	13	41525466	Silent	SNP	T	TCGA-B8-5159-01A-01D-1421-08		41525466	73644412	44	16005											
DCAF11	80344	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24588354	24588354	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	24588354	G	C	24588354	3	2	251	1	0	0	0	0	1	0	0	0	4264	1217	42	4	810	4	DCAF11	14	24588354	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08		24588354	82761186	45	16006											
MAP4K5	11183	hgsc.bcm.edu;ucsc.edu	37	14	50904252	50904252	+	Missense_Mutation	SNP	T	T	G	rs10150701	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	50904252	T	G	50904252	3	3	251	1	0	0	0	0	1	0	0	0	9270	1797	62	5	748	5	MAP4K5	14	50904252	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08	26315898	50904252	56445288	46	16007											
YLPM1	56252	broad.mit.edu;ucsc.edu	37	14	75230551	75230551	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	-	75230551	-	-	75230551	7	5	251	1	0	1	0	1	0	0	0	0	17498	188	7	0	361	0	YLPM1	14	75230551	Frame_Shift_Del	DEL	A	TCGA-B8-5159-01A-01D-1421-08	24326299	75230551	32118989	47	16008											
GABRA5	2558	broad.mit.edu;hgsc.bcm.edu	37	15	27128585	27128585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	27128585	C	A	27128585	3	1	251	1	0	0	0	0	1	0	0	0	6171	709	25	4	392	4	GABRA5	15	27128585	Missense_Mutation	SNP	C	TCGA-B8-5159-01A-01D-1421-08		27128585	75402807	48	16009											
WDR72	256764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	53957926	53957926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	53957926	A	T	53957926	3	4	251	1	0	0	0	0	1	0	0	0	17334	101	4	5	1531	5	WDR72	15	53957926	Missense_Mutation	SNP	A	TCGA-B8-5159-01A-01D-1421-08	26829341	53957926	48573466	49	16010											
ZNF592	9640	hgsc.bcm.edu;ucsc.edu	37	15	85326473	85326477	+	Frame_Shift_Del	DEL	TCCGG	TCCGG	-	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	TCCGG	TCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	-	85326477	TCCGG	-	85326473	7	5	251	1	0	1	0	1	0	0	0	0	18034	1780	62	0	569	0	ZNF592	15	85326473	Frame_Shift_Del	DEL	TCCGG	TCGA-B8-5159-01A-01D-1421-08	31368547	85326473	17204919	50	16011											
KIAA0430	9665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15724209	15724210	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	15724210	-	G	15724209	7	5	251	1	0	1	1	0	0	0	0	0	8184	1579	55	0	3811	0	KIAA0430	16	15724209	Frame_Shift_Ins	INS	-	TCGA-B8-5159-01A-01D-1421-08		15724209	74630544	51	16012											
CNOT1	23019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58555184	58555184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	58555184	G	A	58555184	3	1	251	1	0	0	0	0	1	0	0	0	3619	1174	41	2	183	2	CNOT1	16	58555184	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	42830975	58555184	31799569	52	16013											
CMTM4	146223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	66670397	66670397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	66670397	A	G	66670397	3	3	251	1	0	0	0	0	1	0	0	0	3587	188	7	3	450	3	CMTM4	16	66670397	Missense_Mutation	SNP	A	TCGA-B8-5159-01A-01D-1421-08	8115213	66670397	23684356	53	16014											
MAPK7	5598	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	19284305	19284305	+	Silent	SNP	C	C	G	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	G	19284305	C	G	19284305	2	3	251	1	0	0	0	0	0	0	0	1	9289	900	32	4		4	MAPK7	17	19284305	Silent	SNP	C	TCGA-B8-5159-01A-01D-1421-08		19284305	61910905	54	16015											
KRT36	8689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39643651	39643651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	39643651	T	A	39643651	3	1	251	1	0	0	0	0	1	0	0	0	8480	1664	58	5	476	5	KRT36	17	39643651	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08	20359346	39643651	41551559	55	16016											
NPHS1	4868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36340202	36340202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	36340202	T	C	36340202	3	2	251	1	0	0	0	0	1	0	0	0	10589	1580	55	3	3041	3	NPHS1	19	36340202	Missense_Mutation	SNP	T	TCGA-B8-5159-01A-01D-1421-08		36340202	22788781	56	16017											
AR	367	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	66765719	66765719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	T	66765719	C	T	66765719	3	4	251	1	0	0	0	0	1	0	0	0	836	893	31	1	733	1	AR	23	66765719	Missense_Mutation	SNP	C	TCGA-B8-5159-01A-01D-1421-08		66765719	88504841	57	16018											
FOXO4	4303	broad.mit.edu	37	X	70320778	70320778	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	70320778	A	A	70320778	3	1	251	1	0	0	0	0	1	0	0	0	6032	1203	42	2	704	2	FOXO4	23	70320778	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	3555059	70320778	84949782	58	16019											
NXF2B	728343	broad.mit.edu	37	X	101615563	101615563	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	A	101615563	A	A	101615563	4	1	251	1	0	0	0	0	0	1	0	0	10791	893	31	4	2009	4	NXF2B	23	101615563	Nonsense_Mutation	SNP	C	TCGA-B8-5159-01A-01D-1421-08	31294785	101615563	53654997	59	16020											
ZNF185	7739	broad.mit.edu;hgsc.bcm.edu	37	X	152128271	152128271	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5159-01A-01D-1421-08	TCGA-B8-5159-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed8a9be1-31c6-40e2-9af2-8abd80d00995	82ce0fc3-11dc-4fee-b6cf-3950e3bee733	C	152128271	G	C	152128271	3	2	251	1	0	0	0	0	1	0	0	0	17764	1377	48	4	1745	4	ZNF185	23	152128271	Missense_Mutation	SNP	G	TCGA-B8-5159-01A-01D-1421-08	50512708	152128271	3142289	60	16021											
UBR4	23352	broad.mit.edu	37	1	19407942	19407942	+	Missense_Mutation	SNP	A	A	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	19407942	A	G	19407942	3	3	252	1	0	0	0	0	1	0	0	0	16916	333	12	3	433	3	UBR4	1	19407942	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08		19407942	229842679	1	16022											
USP1	7398	broad.mit.edu	37	1	62911028	62911028	+	Missense_Mutation	SNP	G	G	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	62911028	G	C	62911028	3	2	252	1	0	0	0	0	1	0	0	0	17052	1348	47	4	1195	4	USP1	1	62911028	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	43503086	62911028	186339593	2	16023											
SYT6	148281	broad.mit.edu	37	1	114680517	114680517	+	Missense_Mutation	SNP	G	G	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	114680517	G	C	114680517	3	2	252	1	0	0	0	0	1	0	0	0	15490	942	33	4	881	4	SYT6	1	114680517	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	51769489	114680517	134570104	3	16024											
RPRD2	23248	broad.mit.edu	37	1	150445505	150445505	+	Missense_Mutation	SNP	G	G	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	150445505	G	T	150445505	3	4	252	1	0	0	0	0	1	0	0	0	13630	1348	47	4	4123	4	RPRD2	1	150445505	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	35764988	150445505	98805116	4	16025											
INSRR	3645	broad.mit.edu	37	1	156823587	156823587	+	Silent	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	156823587	C	T	156823587	2	4	252	1	0	0	0	0	0	0	0	1	7781	726	26	2		2	INSRR	1	156823587	Silent	SNP	C	TCGA-B8-5162-01A-01D-1421-08	6378082	156823587	92427034	5	16026											
DARS2	55157	broad.mit.edu	37	1	173826679	173826679	+	Missense_Mutation	SNP	G	G	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	173826679	G	C	173826679	3	2	252	1	0	0	0	0	1	0	0	0	4244	1377	48	4	1840	4	DARS2	1	173826679	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	17003092	173826679	75423942	6	16027											
LAMC1	3915	broad.mit.edu	37	1	183093844	183093844	+	Missense_Mutation	SNP	T	T	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	183093844	T	A	183093844	3	1	252	1	0	0	0	0	1	0	0	0	8621	1580	55	5	2534	5	LAMC1	1	183093844	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	9267165	183093844	66156777	7	16028											
MAPKAPK2	9261	broad.mit.edu	37	1	206905036	206905036	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	206905036	C	A	206905036	3	1	252	1	0	0	0	0	1	0	0	0	9296	507	18	4	974	4	MAPKAPK2	1	206905036	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	23811192	206905036	42345585	8	16029											
POLR1A	25885	broad.mit.edu	37	2	86265841	86265841	+	Missense_Mutation	SNP	A	A	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	86265841	A	C	86265841	3	2	252	1	0	0	0	0	1	0	0	0	12216	188	7	5	1178	5	POLR1A	2	86265841	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08		86265841	156933532	9	16030											
MERTK	10461	broad.mit.edu	37	2	112786169	112786169	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	112786169	G	A	112786169	3	1	252	1	0	0	0	0	1	0	0	0	9486	1087	38	1	2802	1	MERTK	2	112786169	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	26520328	112786169	130413204	10	16031											
RND3	390	broad.mit.edu	37	2	151326539	151326539	+	Missense_Mutation	SNP	A	A	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	151326539	A	C	151326539	3	2	252	1	0	0	0	0	1	0	0	0	13434	69	3	5	41	5	RND3	2	151326539	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08	38540370	151326539	91872834	11	16032											
ABCB11	8647	broad.mit.edu	37	2	169874569	169874569	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	169874569	C	A	169874569	3	1	252	1	0	0	0	0	1	0	0	0	42	913	32	4	4006	4	ABCB11	2	169874569	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	18548030	169874569	73324804	12	16033											
HOXD3	3232	broad.mit.edu	37	2	177033995	177033995	+	Silent	SNP	A	A	C	rs141168805	byFrequency	TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	177033995	A	C	177033995	2	2	252	1	0	0	0	0	0	0	0	1	7330	146	6	5		5	HOXD3	2	177033995	Silent	SNP	A	TCGA-B8-5162-01A-01D-1421-08	7159426	177033995	66165378	13	16034											
DNAJC10	54431	broad.mit.edu	37	2	183584762	183584762	+	Nonsense_Mutation	SNP	T	T	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	183584762	T	A	183584762	4	1	252	1	0	0	0	0	0	1	0	0	4631	1764	61	5	239	5	DNAJC10	2	183584762	Nonsense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	6550767	183584762	59614611	14	16035											
FRZB	2487	broad.mit.edu	37	2	183703339	183703339	+	Missense_Mutation	SNP	T	T	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	183703339	T	C	183703339	3	2	252	1	0	0	0	0	1	0	0	0	6072	1464	51	3	394	3	FRZB	2	183703339	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	118577	183703339	59496034	15	16036											
MYO1B	4430	broad.mit.edu	37	2	192141693	192141693	+	Silent	SNP	A	A	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	192141693	A	G	192141693	2	3	252	1	0	0	0	0	0	0	0	1	10076	40	2	3		3	MYO1B	2	192141693	Silent	SNP	A	TCGA-B8-5162-01A-01D-1421-08	8438354	192141693	51057680	16	16037											
FAM124B	79843	broad.mit.edu	37	2	225266290	225266290	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	225266290	C	A	225266290	3	1	252	1	0	0	0	0	1	0	0	0	5430	681	24	4	1270	4	FAM124B	2	225266290	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	33124597	225266290	17933083	17	16038											
PASK	23178	broad.mit.edu	37	2	242079401	242079401	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	-	242079401	G	-	242079401	7	5	252	1	0	1	0	1	0	0	0	0	11479	971	34	0	3532	0	PASK	2	242079401	Frame_Shift_Del	DEL	G	TCGA-B8-5162-01A-01D-1421-08	16813111	242079401	1119972	18	16039											
VHL	7428	broad.mit.edu	37	3	10188252	10188252	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	-	10188252	A	-	10188252	7	5	252	1	0	1	0	1	0	0	0	0	17174	130	5	0	401	0	VHL	3	10188252	Frame_Shift_Del	DEL	A	TCGA-B8-5162-01A-01D-1421-08		10188252	187834178	19	16040											
KIF15	56992	broad.mit.edu	37	3	44839366	44839366	+	Missense_Mutation	SNP	A	A	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	44839366	A	T	44839366	3	4	252	1	0	0	0	0	1	0	0	0	8284	101	4	5	1054	5	KIF15	3	44839366	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08	34651114	44839366	153183064	20	16041											
CELSR3	1951	broad.mit.edu	37	3	48691328	48691328	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	48691328	C	T	48691328	3	4	252	1	0	0	0	0	1	0	0	0	3225	739	26	2	4789	2	CELSR3	3	48691328	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	3851962	48691328	149331102	21	16042											
OR5K1	26339	broad.mit.edu	37	3	98188528	98188528	+	Silent	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	98188528	G	A	98188528	2	1	252	1	0	0	0	0	0	0	0	1	11173	1277	45	2		2	OR5K1	3	98188528	Silent	SNP	G	TCGA-B8-5162-01A-01D-1421-08	49497200	98188528	99833902	22	16043											
MUC4	4585	broad.mit.edu	37	3	195509378	195509378	+	Missense_Mutation	SNP	G	G	C	rs71291868		TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	195509378	G	C	195509378	3	2	252	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195509378	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	97320850	195509378	2513052	23	16044											
ZNF518B	85460	broad.mit.edu	37	4	10445423	10445423	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	10445423	G	A	10445423	3	1	252	1	0	0	0	0	1	0	0	0	17975	1086	38	1	698	1	ZNF518B	4	10445423	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08		10445423	180708853	24	16045											
ANK2	287	broad.mit.edu	37	4	114277003	114277003	+	Missense_Mutation	SNP	A	A	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	114277003	A	C	114277003	3	2	252	1	0	0	0	0	1	0	0	0	621	246	9	5	7444	5	ANK2	4	114277003	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08	103831580	114277003	76877273	25	16046											
NDST4	64579	broad.mit.edu	37	4	115767136	115767136	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	-	115767136	G	-	115767136	7	5	252	1	0	1	0	1	0	0	0	0	10265	1000	35	0	680	0	NDST4	4	115767136	Frame_Shift_Del	DEL	G	TCGA-B8-5162-01A-01D-1421-08	1490133	115767136	75387140	26	16047	211	2									
NDST4	64579	broad.mit.edu	37	4	115767144	115767144	+	Missense_Mutation	SNP	G	G	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	115767144	G	T	115767144	3	4	252	1	0	0	0	0	1	0	0	0	10265	1020	36	4	688	4	NDST4	4	115767144	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	8	115767144	75387132	27	16048	211	2									
FAT4	79633	broad.mit.edu	37	4	126411764	126411764	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	126411764	C	A	126411764	3	1	252	1	0	0	0	0	1	0	0	0	5699	565	20	4	13853	4	FAT4	4	126411764	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	10644620	126411764	64742512	28	16049											
C5orf55	116349	broad.mit.edu	37	5	442720	442720	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	442720	C	T	442720	3	4	252	1	0	0	0	0	1	0	0	0	2313	768	27	1	145	1	C5orf55	5	442720	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08		442720	180472540	29	16050											
NIPBL	25836	broad.mit.edu	37	5	37048673	37048673	+	Nonsense_Mutation	SNP	T	T	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	37048673	T	A	37048673	4	1	252	1	0	0	0	0	0	1	0	0	10435	1764	61	5	6809	5	NIPBL	5	37048673	Nonsense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	36605953	37048673	143866587	30	16051											
PAIP1	10605	broad.mit.edu	37	5	43556087	43556087	+	Missense_Mutation	SNP	G	G	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	43556087	G	T	43556087	3	4	252	1	0	0	0	0	1	0	0	0	11403	991	35	4	1199	4	PAIP1	5	43556087	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	6507414	43556087	137359173	31	16052											
DMGDH	29958	broad.mit.edu	37	5	78347129	78347129	+	Silent	SNP	A	A	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	78347129	A	G	78347129	2	3	252	1	0	0	0	0	0	0	0	1	4583	446	16	3		3	DMGDH	5	78347129	Silent	SNP	A	TCGA-B8-5162-01A-01D-1421-08	34791042	78347129	102568131	32	16053											
CHD1	1105	broad.mit.edu	37	5	98217770	98217770	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	98217770	C	T	98217770	3	4	252	1	0	0	0	0	1	0	0	0	3325	739	26	2	2424	2	CHD1	5	98217770	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	19870641	98217770	82697490	33	16054											
ISOC1	51015	broad.mit.edu	37	5	128448671	128448671	+	Missense_Mutation	SNP	T	T	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	128448671	T	A	128448671	3	1	252	1	0	0	0	0	1	0	0	0	7869	1667	58	5	892	5	ISOC1	5	128448671	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	30230901	128448671	52466589	34	16055											
IK	3550	broad.mit.edu	37	5	140038746	140038746	+	Missense_Mutation	SNP	T	T	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	140038746	T	A	140038746	3	1	252	1	0	0	0	0	1	0	0	0	7615	1461	51	5	1219	5	IK	5	140038746	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	11590075	140038746	40876514	35	16056											
UIMC1	51720	broad.mit.edu	37	5	176395660	176395663	+	Frame_Shift_Del	DEL	CCCT	CCCT	-			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	-	176395663	CCCT	-	176395660	7	5	252	1	0	1	0	1	0	0	0	0	16983	739	26	0	1103	0	UIMC1	5	176395660	Frame_Shift_Del	DEL	CCCT	TCGA-B8-5162-01A-01D-1421-08	36356914	176395660	4519600	36	16057											
F13A1	2162	broad.mit.edu	37	6	6152120	6152120	+	Missense_Mutation	SNP	T	T	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	6152120	T	G	6152120	3	3	252	1	0	0	0	0	1	0	0	0	5342	1751	61	5	235	5	F13A1	6	6152120	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08		6152120	164962947	37	16058											
F13A1	2162	broad.mit.edu	37	6	6225028	6225028	+	Silent	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	6225028	G	A	6225028	2	1	252	1	0	0	0	0	0	0	0	1	5342	1161	41	2		2	F13A1	6	6225028	Silent	SNP	G	TCGA-B8-5162-01A-01D-1421-08	72908	6225028	164890039	38	16059											
FAM8A1	51439	broad.mit.edu	37	6	17608559	17608559	+	Missense_Mutation	SNP	G	G	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	17608559	G	T	17608559	3	4	252	1	0	0	0	0	1	0	0	0	5656	1348	47	4	1249	4	FAM8A1	6	17608559	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	11383531	17608559	153506508	39	16060											
ZNF451	26036	broad.mit.edu	37	6	56997884	56997884	+	Silent	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	56997884	C	A	56997884	2	1	252	1	0	0	0	0	0	0	0	1	17934	644	23	4		4	ZNF451	6	56997884	Silent	SNP	C	TCGA-B8-5162-01A-01D-1421-08	39389325	56997884	114117183	40	16061											
PGM3	5238	broad.mit.edu	37	6	83881749	83881749	+	Silent	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	83881749	C	T	83881749	2	4	252	1	0	0	0	0	0	0	0	1	11807	581	21	2		2	PGM3	6	83881749	Silent	SNP	C	TCGA-B8-5162-01A-01D-1421-08	26883865	83881749	87233318	41	16062											
SAMD3	154075	broad.mit.edu	37	6	130465915	130465915	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	-	130465915	T	-	130465915	7	5	252	1	0	1	0	1	0	0	0	0	13833	1725	60	0	253	0	SAMD3	6	130465915	Frame_Shift_Del	DEL	T	TCGA-B8-5162-01A-01D-1421-08	46584166	130465915	40649152	42	16063											
GET4	51608	broad.mit.edu	37	7	926213	926213	+	Missense_Mutation	SNP	G	G	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	926213	G	C	926213	3	2	252	1	0	0	0	0	1	0	0	0	6343	1029	36	4	252	4	GET4	7	926213	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08		926213	158212450	43	16064											
THSD7A	221981	broad.mit.edu	37	7	11675781	11675781	+	Missense_Mutation	SNP	T	T	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	11675781	T	C	11675781	3	2	252	1	0	0	0	0	1	0	0	0	15891	1609	56	3	4079	3	THSD7A	7	11675781	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	10749568	11675781	147462882	44	16065											
ADCY1	107	broad.mit.edu	37	7	45743056	45743056	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	45743056	G	A	45743056	3	1	252	1	0	0	0	0	1	0	0	0	292	1087	38	1	2594	1	ADCY1	7	45743056	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	34067275	45743056	113395607	45	16066											
SAMD9	54809	broad.mit.edu	37	7	92734736	92734736	+	Silent	SNP	A	A	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	92734736	A	G	92734736	2	3	252	1	0	0	0	0	0	0	0	1	13839	59	3	3		3	SAMD9	7	92734736	Silent	SNP	A	TCGA-B8-5162-01A-01D-1421-08	46991680	92734736	66403927	46	16067											
CCDC132	55610	broad.mit.edu	37	7	92940514	92940527	+	Frame_Shift_Del	DEL	AGATTACAGTCTAA	AGATTACAGTCTAA	-			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	-	92940527	AGATTACAGTCTAA	-	92940514	7	5	252	1	0	1	0	1	0	0	0	0	2769	175	7	0	1905	0	CCDC132	7	92940514	Frame_Shift_Del	DEL	AGATTACAGTCTAA	TCGA-B8-5162-01A-01D-1421-08	205778	92940514	66198149	47	16068											
KEL	3792	broad.mit.edu	37	7	142658018	142658018	+	Silent	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	142658018	G	A	142658018	2	1	252	1	0	0	0	0	0	0	0	1	8149	1020	36	2		2	KEL	7	142658018	Silent	SNP	G	TCGA-B8-5162-01A-01D-1421-08	49717504	142658018	16480645	48	16069											
AGAP3	116988	broad.mit.edu	37	7	150831516	150831516	+	Missense_Mutation	SNP	G	G	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	150831516	G	C	150831516	3	2	252	1	0	0	0	0	1	0	0	0	369	933	33	4	1465	4	AGAP3	7	150831516	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	8173498	150831516	8307147	49	16070											
XPO7	23039	broad.mit.edu	37	8	21824497	21824497	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	21824497	C	A	21824497	3	1	252	1	0	0	0	0	1	0	0	0	17461	565	20	4	179	4	XPO7	8	21824497	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08		21824497	124539525	50	16071											
PPP3CC	5533	broad.mit.edu	37	8	22397011	22397011	+	Splice_Site	SNP	G	G	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	22397011	G	T	22397011	5	4	252	1	0	0	0	0	0	0	1	0	12409	1014	35	4	1401	4	PPP3CC	8	22397011	Splice_Site	SNP	G	TCGA-B8-5162-01A-01D-1421-08	572514	22397011	123967011	51	16072											
RAD54B	25788	broad.mit.edu	37	8	95403999	95403999	+	Silent	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	95403999	G	A	95403999	2	1	252	1	0	0	0	0	0	0	0	1	13005	1195	42	2		2	RAD54B	8	95403999	Silent	SNP	G	TCGA-B8-5162-01A-01D-1421-08	73006988	95403999	50960023	52	16073											
KCNS2	3788	broad.mit.edu	37	8	99440853	99440853	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	99440853	G	A	99440853	3	1	252	1	0	0	0	0	1	0	0	0	8096	1290	45	2	648	2	KCNS2	8	99440853	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	4036854	99440853	46923169	53	16074											
FOXH1	8928	broad.mit.edu	37	8	145700316	145700316	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	145700316	C	A	145700316	3	1	252	1	0	0	0	0	1	0	0	0	6015	681	24	4	698	4	FOXH1	8	145700316	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	46259463	145700316	663706	54	16075											
TEK	7010	broad.mit.edu	37	9	27213540	27213540	+	Missense_Mutation	SNP	A	A	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	27213540	A	C	27213540	3	2	252	1	0	0	0	0	1	0	0	0	15763	14	1	5	3006	5	TEK	9	27213540	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08		27213540	113999891	55	16076											
SMU1	55234	broad.mit.edu	37	9	33071759	33071759	+	Missense_Mutation	SNP	C	C	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	33071759	C	G	33071759	3	3	252	1	0	0	0	0	1	0	0	0	14830	506	18	4	1212	4	SMU1	9	33071759	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	5858219	33071759	108141672	56	16077											
PTAR1	375743	broad.mit.edu	37	9	72338295	72338295	+	Missense_Mutation	SNP	G	G	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	72338295	G	T	72338295	3	4	252	1	0	0	0	0	1	0	0	0	12734	1281	45	4	326	4	PTAR1	9	72338295	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	39266536	72338295	68875136	57	16078											
ITIH2	3698	broad.mit.edu	37	10	7786219	7786220	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	-	7786220	AC	-	7786219	7	5	252	1	0	1	0	1	0	0	0	0	7911	275	10	0	2454	0	ITIH2	10	7786219	Frame_Shift_Del	DEL	AC	TCGA-B8-5162-01A-01D-1421-08		7786219	127748528	58	16079											
SLC16A9	220963	broad.mit.edu	37	10	61413932	61413932	+	Silent	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	61413932	C	T	61413932	2	4	252	1	0	0	0	0	0	0	0	1	14428	912	32	2		2	SLC16A9	10	61413932	Silent	SNP	C	TCGA-B8-5162-01A-01D-1421-08	53627713	61413932	74120815	59	16080											
STOX1	219736	broad.mit.edu	37	10	70645316	70645316	+	Silent	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	70645316	G	A	70645316	2	1	252	1	0	0	0	0	0	0	0	1	15331	933	33	2		2	STOX1	10	70645316	Silent	SNP	G	TCGA-B8-5162-01A-01D-1421-08	9231384	70645316	64889431	60	16081											
KIF20B	9585	broad.mit.edu	37	10	91514386	91514386	+	Missense_Mutation	SNP	T	T	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	91514386	T	C	91514386	3	2	252	1	0	0	0	0	1	0	0	0	8294	1406	49	3	4437	3	KIF20B	10	91514386	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	20869070	91514386	44020361	61	16082											
C10orf62	414157	broad.mit.edu	37	10	99349705	99349705	+	Silent	SNP	A	A	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	99349705	A	T	99349705	2	4	252	1	0	0	0	0	0	0	0	1	1613	204	8	5		5	C10orf62	10	99349705	Silent	SNP	A	TCGA-B8-5162-01A-01D-1421-08	7835319	99349705	36185042	62	16083											
PNLIP	5406	broad.mit.edu	37	10	118327269	118327269	+	Missense_Mutation	SNP	A	A	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	118327269	A	G	118327269	3	3	252	1	0	0	0	0	1	0	0	0	12156	43	2	3	1403	3	PNLIP	10	118327269	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08	18977564	118327269	17207478	63	16084											
C10orf137	26098	broad.mit.edu	37	10	127422205	127422205	+	Splice_Site	SNP	A	A	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	127422205	A	T	127422205	5	4	252	1	0	0	0	0	0	0	1	0	1596	144	5	5	1214	5	C10orf137	10	127422205	Splice_Site	SNP	A	TCGA-B8-5162-01A-01D-1421-08	9094936	127422205	8112542	64	16085											
QSER1	79832	broad.mit.edu	37	11	32953290	32953290	+	Splice_Site	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	32953290	C	A	32953290	5	1	252	1	0	0	0	0	0	0	1	0	12895	724	25	4	105	4	QSER1	11	32953290	Splice_Site	SNP	C	TCGA-B8-5162-01A-01D-1421-08		32953290	102053226	65	16086											
CKAP5	9793	broad.mit.edu	37	11	46772146	46772146	+	Missense_Mutation	SNP	T	T	C			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	C	46772146	T	C	46772146	3	2	252	1	0	0	0	0	1	0	0	0	3447	1850	64	3	638	3	CKAP5	11	46772146	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	13818856	46772146	88234370	66	16087											
NUDT22	84304	broad.mit.edu	37	11	63997567	63997567	+	RNA	DEL	A	A	-	rs11364788		TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	-	63997567	A	-	63997567	6	5	252	0	1	1	0	1	0	0	0	0	10746	261	9	0		0	NUDT22	11	63997567	RNA	DEL	A	TCGA-B8-5162-01A-01D-1421-08	17225421	63997567	71008949	67	16088											
CLEC4E	26253	broad.mit.edu	37	12	8693386	8693386	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	8693386	G	A	8693386	3	1	252	1	0	0	0	0	1	0	0	0	3517	1294	45	2	675	2	CLEC4E	12	8693386	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08		8693386	125158509	68	16089											
GUCY2C	2984	broad.mit.edu	37	12	14804433	14804433	+	Missense_Mutation	SNP	C	C	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	14804433	C	G	14804433	3	3	252	1	0	0	0	0	1	0	0	0	6903	826	29	4	1655	4	GUCY2C	12	14804433	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	6111047	14804433	119047462	69	16090											
PPHLN1	51535	broad.mit.edu	37	12	42745776	42745776	+	Missense_Mutation	SNP	T	T	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	42745776	T	A	42745776	3	1	252	1	0	0	0	0	1	0	0	0	12322	1664	58	5	193	5	PPHLN1	12	42745776	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	27941343	42745776	91106119	70	16091											
OR6C4	341418	broad.mit.edu	37	12	55945275	55945275	+	Missense_Mutation	SNP	G	G	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	55945275	G	T	55945275	3	4	252	1	0	0	0	0	1	0	0	0	11200	1029	36	4	267	4	OR6C4	12	55945275	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	13199499	55945275	77906620	71	16092											
LRRIQ1	84125	broad.mit.edu	37	12	85460535	85460535	+	Missense_Mutation	SNP	A	A	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	85460535	A	T	85460535	3	4	252	1	0	0	0	0	1	0	0	0	9036	449	16	5	2588	5	LRRIQ1	12	85460535	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08	29515260	85460535	48391360	72	16093											
SLC17A8	246213	broad.mit.edu	37	12	100774639	100774639	+	Missense_Mutation	SNP	A	A	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	100774639	A	T	100774639	3	4	252	1	0	0	0	0	1	0	0	0	14436	217	8	5	268	5	SLC17A8	12	100774639	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08	15314104	100774639	33077256	73	16094											
FRY	10129	broad.mit.edu	37	13	32811616	32811616	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	32811616	G	A	32811616	3	1	252	1	0	0	0	0	1	0	0	0	6070	1087	38	1	6085	1	FRY	13	32811616	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08		32811616	82358262	74	16095											
DIAPH3	81624	broad.mit.edu	37	13	60582733	60582734	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	60582734	-	T	60582733	7	5	252	1	0	1	1	0	0	0	0	0	4522	101	4	0	2722	0	DIAPH3	13	60582733	Frame_Shift_Ins	INS	-	TCGA-B8-5162-01A-01D-1421-08	27771117	60582733	54587145	75	16096											
MYH7	4625	broad.mit.edu	37	14	23902427	23902427	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	23902427	C	T	23902427	3	4	252	1	0	0	0	0	1	0	0	0	10046	536	19	1	5744	1	MYH7	14	23902427	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08		23902427	83447113	76	16097											
SLC24A4	123041	broad.mit.edu	37	14	92915516	92915516	+	Missense_Mutation	SNP	A	A	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	92915516	A	G	92915516	3	3	252	1	0	0	0	0	1	0	0	0	14481	449	16	3	823	3	SLC24A4	14	92915516	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08	69013089	92915516	14434024	77	16098											
ITPK1	3705	broad.mit.edu	37	14	93483124	93483124	+	Missense_Mutation	SNP	T	T	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	93483124	T	G	93483124	3	3	252	1	0	0	0	0	1	0	0	0	7923	1551	54	5	1181	5	ITPK1	14	93483124	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	567608	93483124	13866416	78	16099											
GLRX5	51218	broad.mit.edu	37	14	96010330	96010330	+	Silent	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	96010330	C	T	96010330	2	4	252	1	0	0	0	0	0	0	0	1	6469	813	29	2		2	GLRX5	14	96010330	Silent	SNP	C	TCGA-B8-5162-01A-01D-1421-08	2527206	96010330	11339210	79	16100											
MGA	23269	broad.mit.edu	37	15	41988785	41988785	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	41988785	C	T	41988785	3	4	252	1	0	0	0	0	1	0	0	0	9547	838	29	2	1583	2	MGA	15	41988785	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08		41988785	60542607	80	16101											
ZNF609	23060	broad.mit.edu	37	15	64967791	64967791	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	64967791	C	A	64967791	3	1	252	1	0	0	0	0	1	0	0	0	18047	623	22	4	2752	4	ZNF609	15	64967791	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	22979006	64967791	37563601	81	16102											
FEM1B	10116	broad.mit.edu	37	15	68582628	68582628	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	68582628	C	A	68582628	3	1	252	1	0	0	0	0	1	0	0	0	5817	681	24	4	938	4	FEM1B	15	68582628	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	3614837	68582628	33948764	82	16103											
GTF3C1	2975	broad.mit.edu	37	16	27523215	27523215	+	Silent	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	27523215	G	A	27523215	2	1	252	1	0	0	0	0	0	0	0	1	6879	1136	40	1		1	GTF3C1	16	27523215	Silent	SNP	G	TCGA-B8-5162-01A-01D-1421-08		27523215	62831538	83	16104											
TAOK2	9344	broad.mit.edu	37	16	29989600	29989600	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	29989600	C	T	29989600	3	4	252	1	0	0	0	0	1	0	0	0	15560	759	27	1	242	1	TAOK2	16	29989600	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	2466385	29989600	60365153	84	16105											
FUS	2521	broad.mit.edu	37	16	31196376	31196376	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	31196376	G	A	31196376	3	1	252	1	0	0	0	0	1	0	0	0	6107	1349	47	2	662	2	FUS	16	31196376	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	1206776	31196376	59158377	85	16106											
ACAP1	9744	broad.mit.edu	37	17	7246852	7246852	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	7246852	C	T	7246852	3	4	252	1	0	0	0	0	1	0	0	0	118	643	23	1	521	1	ACAP1	17	7246852	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08		7246852	73948358	86	16107											
LLGL1	3996	broad.mit.edu	37	17	18144992	18144992	+	Silent	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	18144992	C	T	18144992	2	4	252	1	0	0	0	0	0	0	0	1	8840	767	27	1		1	LLGL1	17	18144992	Silent	SNP	C	TCGA-B8-5162-01A-01D-1421-08	10898140	18144992	63050218	87	16108											
FBXW10	10517	broad.mit.edu	37	17	18675803	18675803	+	Silent	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	18675803	G	A	18675803	2	1	252	1	0	0	0	0	0	0	0	1	5770	1045	37	1		1	FBXW10	17	18675803	Silent	SNP	G	TCGA-B8-5162-01A-01D-1421-08	530811	18675803	62519407	88	16109											
CCT6B	10693	broad.mit.edu	37	17	33266673	33266673	+	Missense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	33266673	C	A	33266673	3	1	252	1	0	0	0	0	1	0	0	0	2960	710	25	4	588	4	CCT6B	17	33266673	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	14590870	33266673	47928537	89	16110											
AP2B1	163	broad.mit.edu	37	17	33935330	33935330	+	Missense_Mutation	SNP	A	A	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	33935330	A	T	33935330	3	4	252	1	0	0	0	0	1	0	0	0	741	333	12	5	463	5	AP2B1	17	33935330	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08	668657	33935330	47259880	90	16111											
SLC25A39	51629	broad.mit.edu	37	17	42397438	42397438	+	Missense_Mutation	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	42397438	C	T	42397438	3	4	252	1	0	0	0	0	1	0	0	0	14516	826	29	2	72	2	SLC25A39	17	42397438	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	8462108	42397438	38797772	91	16112											
DGKE	8526	broad.mit.edu	37	17	54939989	54939989	+	Missense_Mutation	SNP	C	C	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	54939989	C	G	54939989	3	3	252	1	0	0	0	0	1	0	0	0	4470	855	30	4	1583	4	DGKE	17	54939989	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	12542551	54939989	26255221	92	16113											
JMJD6	23210	broad.mit.edu	37	17	74720093	74720093	+	Missense_Mutation	SNP	T	T	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	74720093	T	G	74720093	3	3	252	1	0	0	0	0	1	0	0	0	7960	1667	58	5	702	5	JMJD6	17	74720093	Missense_Mutation	SNP	T	TCGA-B8-5162-01A-01D-1421-08	19780104	74720093	6475117	93	16114											
ELAVL3	1995	broad.mit.edu	37	19	11565539	11565539	+	Silent	SNP	C	C	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	11565539	C	T	11565539	2	4	252	1	0	0	0	0	0	0	0	1	5053	796	28	2		2	ELAVL3	19	11565539	Silent	SNP	C	TCGA-B8-5162-01A-01D-1421-08		11565539	47563444	94	16115											
ZNF226	7769	broad.mit.edu	37	19	44680231	44680231	+	Silent	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	44680231	G	A	44680231	2	1	252	1	0	0	0	0	0	0	0	1	17792	1020	36	2		2	ZNF226	19	44680231	Silent	SNP	G	TCGA-B8-5162-01A-01D-1421-08	33114692	44680231	14448752	95	16116											
C5AR1	728	broad.mit.edu	37	19	47823040	47823040	+	Missense_Mutation	SNP	C	C	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	47823040	C	G	47823040	3	3	252	1	0	0	0	0	1	0	0	0	2283	579	20	4	11	4	C5AR1	19	47823040	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	3142809	47823040	11305943	96	16117											
UBOX5	22888	broad.mit.edu	37	20	3102446	3102446	+	Nonsense_Mutation	SNP	G	G	T			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	3102446	G	T	3102446	4	4	252	1	0	0	0	0	0	1	0	0	16906	1294	45	4	798	4	UBOX5	20	3102446	Nonsense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08		3102446	59923074	97	16118											
CEP250	11190	broad.mit.edu	37	20	34091340	34091340	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	34091340	G	A	34091340	3	1	252	1	0	0	0	0	1	0	0	0	3254	1232	43	2	5249	2	CEP250	20	34091340	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08	30988894	34091340	28934180	98	16119											
TST	7263	broad.mit.edu	37	22	37407193	37407193	+	Missense_Mutation	SNP	C	C	T	rs144544206		TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	T	37407193	C	T	37407193	3	4	252	1	0	0	0	0	1	0	0	0	16685	536	19	1	128	1	TST	22	37407193	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08		37407193	13897373	99	16120											
TRIOBP	11078	broad.mit.edu	37	22	38119653	38119653	+	Missense_Mutation	SNP	C	C	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	38119653	C	G	38119653	3	3	252	1	0	0	0	0	1	0	0	0	16565	623	22	4	1108	4	TRIOBP	22	38119653	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	712460	38119653	13184913	100	16121											
L3MBTL2	83746	broad.mit.edu	37	22	41613163	41613163	+	Missense_Mutation	SNP	A	A	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	41613163	A	G	41613163	3	3	252	1	0	0	0	0	1	0	0	0	8599	72	3	3	575	3	L3MBTL2	22	41613163	Missense_Mutation	SNP	A	TCGA-B8-5162-01A-01D-1421-08	3493510	41613163	9691403	101	16122											
ACRC	93953	broad.mit.edu	37	X	70823810	70823810	+	Missense_Mutation	SNP	G	G	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	70823810	G	A	70823810	3	1	252	1	0	0	0	0	1	0	0	0	171	971	34	2	709	2	ACRC	23	70823810	Missense_Mutation	SNP	G	TCGA-B8-5162-01A-01D-1421-08		70823810	84446750	102	16123											
PHKA1	5255	broad.mit.edu	37	X	71830970	71830970	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	A	71830970	C	A	71830970	4	1	252	1	0	0	0	0	0	1	0	0	11850	893	31	4	1281	4	PHKA1	23	71830970	Nonsense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	1007160	71830970	83439590	103	16124											
TSC22D3	1831	broad.mit.edu	37	X	106957762	106957762	+	Missense_Mutation	SNP	C	C	G			TCGA-B8-5162-01A-01D-1421-08	TCGA-B8-5162-10A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	451e7b1a-dbc5-4360-81fe-861b1d825ed4	26b27e79-d6a3-42f4-8c2b-a93035b1a669	G	106957762	C	G	106957762	3	3	252	1	0	0	0	0	1	0	0	0	16621	507	18	4	16	4	TSC22D3	23	106957762	Missense_Mutation	SNP	C	TCGA-B8-5162-01A-01D-1421-08	35126792	106957762	48312798	104	16125											
MTF1	4520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	38300878	38300878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	38300878	G	T	38300878	3	4	253	1	0	0	0	0	1	0	0	0	9929	1232	43	4	1422	4	MTF1	1	38300878	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08		38300878	210949743	1	16126											
COL24A1	255631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	86591208	86591208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	86591208	G	A	86591208	3	1	253	1	0	0	0	0	1	0	0	0	3685	1203	42	2	4565	2	COL24A1	1	86591208	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	48290330	86591208	162659413	2	16127											
AGL	178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100336085	100336085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	100336085	A	T	100336085	3	4	253	1	0	0	0	0	1	0	0	0	384	14	1	5	881	5	AGL	1	100336085	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	13744877	100336085	148914536	3	16128											
OTUD7B	56957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	149920966	149920966	+	Silent	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	149920966	A	G	149920966	2	3	253	1	0	0	0	0	0	0	0	1	11326	98	4	3		3	OTUD7B	1	149920966	Silent	SNP	A	TCGA-B8-5163-01A-01D-1421-08	49584881	149920966	99329655	4	16129											
DCAF6	55827	broad.mit.edu;hgsc.bcm.edu	37	1	167974003	167974003	+	Silent	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	167974003	A	G	167974003	2	3	253	1	0	0	0	0	0	0	0	1	4276	204	8	3		3	DCAF6	1	167974003	Silent	SNP	A	TCGA-B8-5163-01A-01D-1421-08	18053037	167974003	81276618	5	16130											
C4BPA	722	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	207300079	207300079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	207300079	A	C	207300079	3	2	253	1	0	0	0	0	1	0	0	0	2251	333	12	5	750	5	C4BPA	1	207300079	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	39326076	207300079	41950542	6	16131											
TARBP1	6894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	234582578	234582578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	234582578	C	T	234582578	3	4	253	1	0	0	0	0	1	0	0	0	15567	710	25	2	2836	2	TARBP1	1	234582578	Missense_Mutation	SNP	C	TCGA-B8-5163-01A-01D-1421-08	27282499	234582578	14668043	7	16132											
TTC15	0	broad.mit.edu;hgsc.bcm.edu	37	2	3392356	3392356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	3392356	G	A	3392356	3	1	253	1	0	0	0	0	1	0	0	0	16694	1116	39	1	964	1	TTC15	2	3392356	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08		3392356	239807017	8	16133											
ALK	238	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	29420425	29420425	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	29420425	C	G	29420425	3	3	253	1	0	0	0	0	1	0	0	0	525	912	32	4	818	4	ALK	2	29420425	Missense_Mutation	SNP	C	TCGA-B8-5163-01A-01D-1421-08	26028069	29420425	213778948	9	16134											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32640925	32640925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	32640925	A	G	32640925	3	3	253	1	0	0	0	0	1	0	0	0	1438	101	4	3	2604	3	BIRC6	2	32640925	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	3220500	32640925	210558448	10	16135											
KLRAQ1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	48698316	48698316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	48698316	G	A	48698316	3	1	253	1	0	0	0	0	1	0	0	0	8420	1377	48	2	1026	2	KLRAQ1	2	48698316	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	16057391	48698316	194501057	11	16136											
SUCLG1	8802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	84668507	84668507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	84668507	G	T	84668507	3	4	253	1	0	0	0	0	1	0	0	0	15376	971	34	4	669	4	SUCLG1	2	84668507	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	35970191	84668507	158530866	12	16137											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188218	10188218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	10188218	G	T	10188218	3	4	253	1	0	0	0	0	1	0	0	0	17174	942	33	4	367	4	VHL	3	10188218	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08		10188218	187834212	13	16138											
AZI2	64343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	28368357	28368357	+	Silent	SNP	T	T	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	28368357	T	C	28368357	2	2	253	1	0	0	0	0	0	0	0	1	1241	1741	61	3		3	AZI2	3	28368357	Silent	SNP	T	TCGA-B8-5163-01A-01D-1421-08	18180139	28368357	169654073	14	16139											
C3orf67	200844	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	58899557	58899557	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	58899557	T	A	58899557	3	1	253	1	0	0	0	0	1	0	0	0	2243	1696	59	5	1683	5	C3orf67	3	58899557	Missense_Mutation	SNP	T	TCGA-B8-5163-01A-01D-1421-08	30531200	58899557	139122873	15	16140											
PIK3CB	5291	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	138413736	138413736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	138413736	A	G	138413736	3	3	253	1	0	0	0	0	1	0	0	0	11921	72	3	3	1470	3	PIK3CB	3	138413736	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	79514179	138413736	59608694	16	16141											
MUC4	4585	broad.mit.edu	37	3	195505859	195505859	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	195505859	C	C	195505859	3	2	253	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195505859	Missense_Mutation	SNP	T	TCGA-B8-5163-01A-01D-1421-08	57092123	195505859	2516571	17	16142											
PCDH7	5099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	30725802	30725802	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	30725802	G	C	30725802	3	2	253	1	0	0	0	0	1	0	0	0	11523	1059	37	4	2760	4	PCDH7	4	30725802	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08		30725802	160428474	18	16143											
UGT2B15	7366	broad.mit.edu;hgsc.bcm.edu	37	4	69519852	69519852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	69519852	G	T	69519852	3	4	253	1	0	0	0	0	1	0	0	0	16970	1290	45	4	2001	4	UGT2B15	4	69519852	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	38794050	69519852	121634424	19	16144											
ZFP42	132625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	188924839	188924839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	188924839	A	G	188924839	3	3	253	1	0	0	0	0	1	0	0	0	17662	14	1	3	880	3	ZFP42	4	188924839	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	119404987	188924839	2229437	20	16145											
FAM105B	90268	hgsc.bcm.edu;ucsc.edu	37	5	14673798	14673798	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	-	14673798	A	-	14673798	7	5	253	1	0	1	0	1	0	0	0	0	5392	246	9	0	206	0	FAM105B	5	14673798	Frame_Shift_Del	DEL	A	TCGA-B8-5163-01A-01D-1421-08		14673798	166241462	21	16146											
GHR	2690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	42719044	42719044	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	42719044	A	C	42719044	3	2	253	1	0	0	0	0	1	0	0	0	6378	72	3	5	1469	5	GHR	5	42719044	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	28045246	42719044	138196216	22	16147											
CHD1	1105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	98204294	98204294	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	98204294	A	C	98204294	3	2	253	1	0	0	0	0	1	0	0	0	3325	246	9	5	1003	5	CHD1	5	98204294	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	55485250	98204294	82710966	23	16148											
MEGF10	84466	hgsc.bcm.edu;ucsc.edu	37	5	126754854	126754854	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	-	126754854	A	-	126754854	7	5	253	1	0	1	0	1	0	0	0	0	9467	333	12	0	1386	0	MEGF10	5	126754854	Frame_Shift_Del	DEL	A	TCGA-B8-5163-01A-01D-1421-08	28550560	126754854	54160406	24	16149	212	2									
MEGF10	84466	hgsc.bcm.edu	37	5	126754856	126754856	+	Silent	SNP	A	A	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	126754856	A	T	126754856	2	4	253	1	0	0	0	0	0	0	0	1	9467	352	13	5		5	MEGF10	5	126754856	Silent	SNP	A	TCGA-B8-5163-01A-01D-1421-08	2	126754856	54160404	25	16150	212	2									
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127642858	127642858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	127642858	G	T	127642858	3	4	253	1	0	0	0	0	1	0	0	0	5710	1281	45	4	3443	4	FBN2	5	127642858	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	888002	127642858	53272402	26	16151											
ITK	3702	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	156670646	156670646	+	Silent	SNP	C	C	A	rs142689933	alternate_allele	TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	156670646	C	A	156670646	2	1	253	1	0	0	0	0	0	0	0	1	7916	874	31	4		4	ITK	5	156670646	Silent	SNP	C	TCGA-B8-5163-01A-01D-1421-08	29027788	156670646	24244614	27	16152											
PGBD1	84547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28268767	28268767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	28268767	A	G	28268767	3	3	253	1	0	0	0	0	1	0	0	0	11787	72	3	3	1158	3	PGBD1	6	28268767	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08		28268767	142846300	28	16153											
ZNF323	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28294515	28294515	+	Silent	SNP	T	T	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	28294515	T	G	28294515	2	3	253	1	0	0	0	0	0	0	0	1	17855	1588	55	5		5	ZNF323	6	28294515	Silent	SNP	T	TCGA-B8-5163-01A-01D-1421-08	25748	28294515	142820552	29	16154											
GPSM3	63940	hgsc.bcm.edu	37	6	32159933	32159934	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	32159934	-	G	32159933	7	5	253	1	0	1	1	0	0	0	0	0	6743	768	27	0	357	0	GPSM3	6	32159933	Frame_Shift_Ins	INS	-	TCGA-B8-5163-01A-01D-1421-08	3865418	32159933	138955134	30	16155											
CUL9	23113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43153719	43153719	+	Silent	SNP	G	G	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	43153719	G	A	43153719	2	1	253	1	0	0	0	0	0	0	0	1	4063	1339	47	2		2	CUL9	6	43153719	Silent	SNP	G	TCGA-B8-5163-01A-01D-1421-08	10993786	43153719	127961348	31	16156											
EPHB6	2051	hgsc.bcm.edu	37	7	142562451	142562452	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	142562452	-	C	142562451	7	5	253	1	0	1	1	0	0	0	0	0	5180	1203	42	0	903	0	EPHB6	7	142562451	Frame_Shift_Ins	INS	-	TCGA-B8-5163-01A-01D-1421-08		142562451	16576212	32	16157											
EZH2	2146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	148544374	148544374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	148544374	T	A	148544374	3	1	253	1	0	0	0	0	1	0	0	0	5336	1609	56	5	2314	5	EZH2	7	148544374	Missense_Mutation	SNP	T	TCGA-B8-5163-01A-01D-1421-08	5981923	148544374	10594289	33	16158											
UBE2W	55284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	74742665	74742665	+	Missense_Mutation	SNP	G	G	T	rs17855421	alternate_allele	TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	74742665	G	T	74742665	3	4	253	1	0	0	0	0	1	0	0	0	16889	1261	44	4	417	4	UBE2W	8	74742665	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08		74742665	71621357	34	16159											
KIFC2	90990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145697356	145697356	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	145697356	C	G	145697356	3	3	253	1	0	0	0	0	1	0	0	0	8320	855	30	4	1462	4	KIFC2	8	145697356	Missense_Mutation	SNP	C	TCGA-B8-5163-01A-01D-1421-08	70954691	145697356	666666	35	16160											
DHTKD1	55526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	12142206	12142206	+	Silent	SNP	C	C	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	12142206	C	A	12142206	2	1	253	1	0	0	0	0	0	0	0	1	4502	816	29	4		4	DHTKD1	10	12142206	Silent	SNP	C	TCGA-B8-5163-01A-01D-1421-08		12142206	123392541	36	16161											
FAM13C	220965	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61083812	61083812	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	61083812	G	C	61083812	3	2	253	1	0	0	0	0	1	0	0	0	5458	1261	44	4	1422	4	FAM13C	10	61083812	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	48941606	61083812	74450935	37	16162											
TCN1	6947	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	59622280	59622280	+	Silent	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	59622280	A	G	59622280	2	3	253	1	0	0	0	0	0	0	0	1	15718	407	15	3		3	TCN1	11	59622280	Silent	SNP	A	TCGA-B8-5163-01A-01D-1421-08		59622280	75384236	38	16163											
GPR137	56834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64055547	64055547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	64055547	T	C	64055547	3	2	253	1	0	0	0	0	1	0	0	0	6652	1696	59	3	840	3	GPR137	11	64055547	Missense_Mutation	SNP	T	TCGA-B8-5163-01A-01D-1421-08	4433267	64055547	70950969	39	16164											
GPHA2	170589	hgsc.bcm.edu	37	11	64702280	64702281	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	64702281	-	G	64702280	7	5	253	1	0	1	1	0	0	0	0	0	6615	188	7	0	38	0	GPHA2	11	64702280	Frame_Shift_Ins	INS	-	TCGA-B8-5163-01A-01D-1421-08	646733	64702280	70304236	40	16165											
C11orf24	53838	broad.mit.edu;ucsc.edu	37	11	68031203	68031203	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	68031203	T	T	68031203	3	4	253	1	0	0	0	0	1	0	0	0	1637	933	33	4	1324	4	C11orf24	11	68031203	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	3328923	68031203	66975313	41	16166											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92531125	92531125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	92531125	C	T	92531125	3	4	253	1	0	0	0	0	1	0	0	0	5698	652	23	1	4980	1	FAT3	11	92531125	Missense_Mutation	SNP	C	TCGA-B8-5163-01A-01D-1421-08	24499922	92531125	42475391	42	16167											
DPAGT1	1798	hgsc.bcm.edu	37	11	118972218	118972219	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	118972219	-	G	118972218	7	5	253	1	0	1	1	0	0	0	0	0	4712	1580	55	0	1114	0	DPAGT1	11	118972218	Frame_Shift_Ins	INS	-	TCGA-B8-5163-01A-01D-1421-08	26441093	118972218	16034298	43	16168											
GLB1L2	89944	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	134240284	134240284	+	Silent	SNP	C	C	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	134240284	C	T	134240284	2	4	253	1	0	0	0	0	0	0	0	1	6436	518	18	2		2	GLB1L2	11	134240284	Silent	SNP	C	TCGA-B8-5163-01A-01D-1421-08	15268066	134240284	766232	44	16169											
CACNA1C	775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	2566764	2566764	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	2566764	A	T	2566764	4	4	253	1	0	0	0	0	0	1	0	0	2542	131	5	5	667	5	CACNA1C	12	2566764	Nonsense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08		2566764	131285131	45	16170											
STAT6	6778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57493192	57493192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	57493192	G	T	57493192	3	4	253	1	0	0	0	0	1	0	0	0	15282	933	33	4	795	4	STAT6	12	57493192	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	54926428	57493192	76358703	46	16171											
ANKS1B	56899	broad.mit.edu;hgsc.bcm.edu	37	12	100378000	100378000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	100378000	C	G	100378000	3	3	253	1	0	0	0	0	1	0	0	0	689	864	30	4	4122	4	ANKS1B	12	100378000	Missense_Mutation	SNP	C	TCGA-B8-5163-01A-01D-1421-08	42884808	100378000	33473895	47	16172											
PRDM4	11108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	108145591	108145591	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	108145591	T	A	108145591	3	1	253	1	0	0	0	0	1	0	0	0	12469	1812	63	5	1710	5	PRDM4	12	108145591	Missense_Mutation	SNP	T	TCGA-B8-5163-01A-01D-1421-08	7767591	108145591	25706304	48	16173											
NUDT15	55270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	48619890	48619890	+	Silent	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	48619890	A	G	48619890	2	3	253	1	0	0	0	0	0	0	0	1	10738	69	3	3		3	NUDT15	13	48619890	Silent	SNP	A	TCGA-B8-5163-01A-01D-1421-08		48619890	66549988	49	16174											
DCT	1638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	95114377	95114377	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	95114377	A	C	95114377	3	2	253	1	0	0	0	0	1	0	0	0	4306	330	12	5	752	5	DCT	13	95114377	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	46494487	95114377	20055501	50	16175											
BRMS1L	84312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	36304068	36304068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	36304068	G	T	36304068	3	4	253	1	0	0	0	0	1	0	0	0	1519	1319	46	4	394	4	BRMS1L	14	36304068	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08		36304068	71045472	51	16176											
MTHFD1	4522	hgsc.bcm.edu	37	14	64891617	64891617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	64891617	G	A	64891617	3	1	253	1	0	0	0	0	1	0	0	0	9934	1145	40	1	857	1	MTHFD1	14	64891617	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	28587549	64891617	42457923	52	16177											
PSEN1	5663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	73685985	73685985	+	Silent	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	73685985	A	G	73685985	2	3	253	1	0	0	0	0	0	0	0	1	12660	98	4	3		3	PSEN1	14	73685985	Silent	SNP	A	TCGA-B8-5163-01A-01D-1421-08	8794368	73685985	33663555	53	16178											
ACOT6	641372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74086150	74086150	+	Silent	SNP	T	T	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	74086150	T	C	74086150	2	2	253	1	0	0	0	0	0	0	0	1	154	1596	56	3		3	ACOT6	14	74086150	Silent	SNP	T	TCGA-B8-5163-01A-01D-1421-08	400165	74086150	33263390	54	16179											
ADAM10	102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	58925400	58925400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	58925400	A	G	58925400	3	3	253	1	0	0	0	0	1	0	0	0	234	333	12	3	1107	3	ADAM10	15	58925400	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08		58925400	43605992	55	16180											
MYO1E	4643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59464119	59464119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	59464119	T	A	59464119	3	1	253	1	0	0	0	0	1	0	0	0	10079	1722	60	5	897	5	MYO1E	15	59464119	Missense_Mutation	SNP	T	TCGA-B8-5163-01A-01D-1421-08	538719	59464119	43067273	56	16181											
ELMO3	79767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67236114	67236114	+	Silent	SNP	C	C	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	67236114	C	T	67236114	2	4	253	1	0	0	0	0	0	0	0	1	5069	535	19	1		1	ELMO3	16	67236114	Silent	SNP	C	TCGA-B8-5163-01A-01D-1421-08		67236114	23118639	57	16182											
KRBA2	124751	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8274814	8274814	+	Silent	SNP	T	T	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	8274814	T	G	8274814	2	3	253	1	0	0	0	0	0	0	0	1	8447	1567	55	5		5	KRBA2	17	8274814	Silent	SNP	T	TCGA-B8-5163-01A-01D-1421-08		8274814	72920396	58	16183											
TBC1D29	26083	broad.mit.edu;hgsc.bcm.edu	37	17	28887640	28887640	+	Silent	SNP	T	T	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	28887640	T	C	28887640	2	2	253	1	0	0	0	0	0	0	0	1	15630	1538	54	3		3	TBC1D29	17	28887640	Silent	SNP	T	TCGA-B8-5163-01A-01D-1421-08	20612826	28887640	52307570	59	16184											
ATAD5	79915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29220506	29220506	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	29220506	T	A	29220506	3	1	253	1	0	0	0	0	1	0	0	0	1076	1490	52	5	4717	5	ATAD5	17	29220506	Missense_Mutation	SNP	T	TCGA-B8-5163-01A-01D-1421-08	332866	29220506	51974704	60	16185											
STARD3	10948	broad.mit.edu;hgsc.bcm.edu	37	17	37815807	37815807	+	Splice_Site	SNP	G	G	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	37815807	G	A	37815807	5	1	253	1	0	0	0	0	0	0	1	0	15269	1391	48	2	839	2	STARD3	17	37815807	Splice_Site	SNP	G	TCGA-B8-5163-01A-01D-1421-08	8595301	37815807	43379403	61	16186											
KRT28	162605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38953169	38953169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	38953169	G	T	38953169	3	4	253	1	0	0	0	0	1	0	0	0	8472	1159	40	4	433	4	KRT28	17	38953169	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	1137362	38953169	42242041	62	16187											
KRTAP4-1	85285	broad.mit.edu;ucsc.edu	37	17	39340703	39340703	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	39340703	C	C	39340703	3	2	253	1	0	0	0	0	1	0	0	0	8555	1029	36	4	40	4	KRTAP4-1	17	39340703	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	387534	39340703	41854507	63	16188											
DNAH17	8632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76475699	76475699	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	76475699	A	T	76475699	3	4	253	1	0	0	0	0	1	0	0	0	4603	43	2	5	5748	5	DNAH17	17	76475699	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	37134996	76475699	4719511	64	16189											
CIB3	117286	broad.mit.edu	37	19	16279070	16279070	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	16279070	T	T	16279070	3	4	253	1	0	0	0	0	1	0	0	0	3424	1203	42	4	351	4	CIB3	19	16279070	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08		16279070	42849913	65	16190											
CEACAM5	1048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42219626	42219626	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	42219626	A	T	42219626	3	4	253	1	0	0	0	0	1	0	0	0	3197	101	4	5	775	5	CEACAM5	19	42219626	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	25940556	42219626	16909357	66	16191											
IRF2BP1	26145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46388204	46388204	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	46388204	C	A	46388204	4	1	253	1	0	0	0	0	0	1	0	0	7836	893	31	4	929	4	IRF2BP1	19	46388204	Nonsense_Mutation	SNP	C	TCGA-B8-5163-01A-01D-1421-08	4168578	46388204	12740779	67	16192											
ZNF418	147686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58439174	58439174	+	Silent	SNP	A	A	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	58439174	A	T	58439174	2	4	253	1	0	0	0	0	0	0	0	1	17907	262	10	5		5	ZNF418	19	58439174	Silent	SNP	A	TCGA-B8-5163-01A-01D-1421-08	12050970	58439174	689809	68	16193											
NCOA6	23054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33337368	33337368	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	33337368	T	A	33337368	3	1	253	1	0	0	0	0	1	0	0	0	10240	1493	52	5	3589	5	NCOA6	20	33337368	Missense_Mutation	SNP	T	TCGA-B8-5163-01A-01D-1421-08		33337368	29688152	69	16194			1	31		2	2	41	T		9.432074e-05
NCOA6	23054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33337408	33337408	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	A	33337408	T	A	33337408	3	1	253	1	0	0	0	0	1	0	0	0	10240	1841	64	5	3629	5	NCOA6	20	33337408	Missense_Mutation	SNP	T	TCGA-B8-5163-01A-01D-1421-08	40	33337408	29688112	70	16195			1	31		2	2	41	T		9.432074e-05
SRMS	6725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62174694	62174694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	T	62174694	G	T	62174694	3	4	253	1	0	0	0	0	1	0	0	0	15164	1252	44	4	872	4	SRMS	20	62174694	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	28837286	62174694	850826	71	16196											
XG	7499	hgsc.bcm.edu;ucsc.edu	37	X	2688594	2688594	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	-	2688594	A	-	2688594	7	5	253	1	0	1	0	1	0	0	0	0	17439	130	5	0	71	0	XG	23	2688594	Frame_Shift_Del	DEL	A	TCGA-B8-5163-01A-01D-1421-08		2688594	152581966	72	16197											
KIF4A	24137	broad.mit.edu;hgsc.bcm.edu	37	X	69595153	69595153	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	C	69595153	G	C	69595153	3	2	253	1	0	0	0	0	1	0	0	0	8310	991	35	4	1940	4	KIF4A	23	69595153	Missense_Mutation	SNP	G	TCGA-B8-5163-01A-01D-1421-08	66906559	69595153	85675407	73	16198											
SRPK3	26576	hgsc.bcm.edu	37	X	153047253	153047253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5163-01A-01D-1421-08	TCGA-B8-5163-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	903132ef-877f-4207-ba28-2e9dd765c824	9e3d0ca6-9520-4e25-8db3-cf51008a0314	G	153047253	A	G	153047253	3	3	253	1	0	0	0	0	1	0	0	0	15173	275	10	3	369	3	SRPK3	23	153047253	Missense_Mutation	SNP	A	TCGA-B8-5163-01A-01D-1421-08	83452100	153047253	2223307	74	16199											
RPA2	6118	broad.mit.edu	37	1	28240591	28240591	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	28240591	T	T	28240591	3	4	254	1	0	0	0	0	1	0	0	0	13550	1299	45	4	744	4	RPA2	1	28240591	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08		28240591	221010030	1	16200											
CSF3R	1441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36932909	36932909	+	Silent	SNP	C	C	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	36932909	C	T	36932909	2	4	254	1	0	0	0	0	0	0	0	1	3939	855	30	2		2	CSF3R	1	36932909	Silent	SNP	C	TCGA-B8-5164-01A-01D-1421-08	8692318	36932909	212317712	2	16201											
RLF	6018	hgsc.bcm.edu;ucsc.edu	37	1	40703457	40703458	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	-	40703458	AT	-	40703457	7	5	254	1	0	1	0	1	0	0	0	0	13402	333	12	0	3113	0	RLF	1	40703457	Frame_Shift_Del	DEL	AT	TCGA-B8-5164-01A-01D-1421-08	3770548	40703457	208547164	3	16202											
ZFYVE9	9372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	52703253	52703253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	52703253	G	C	52703253	3	2	254	1	0	0	0	0	1	0	0	0	17683	1029	36	4	170	4	ZFYVE9	1	52703253	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	11999796	52703253	196547368	4	16203											
BRDT	676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	92470112	92470112	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	92470112	G	T	92470112	4	4	254	1	0	0	0	0	0	1	0	0	1510	1175	41	4	2592	4	BRDT	1	92470112	Nonsense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	39766859	92470112	156780509	5	16204											
CELSR2	1952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109795801	109795801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	109795801	G	A	109795801	3	1	254	1	0	0	0	0	1	0	0	0	3224	1377	48	2	3102	2	CELSR2	1	109795801	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	17325689	109795801	139454820	6	16205											
ADAM30	11085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	120437279	120437279	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	120437279	T	G	120437279	3	3	254	1	0	0	0	0	1	0	0	0	248	1841	64	5	695	5	ADAM30	1	120437279	Missense_Mutation	SNP	T	TCGA-B8-5164-01A-01D-1421-08	10641478	120437279	128813342	7	16206											
CTSE	1510	hgsc.bcm.edu;ucsc.edu	37	1	206320203	206320203	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	-	206320203	A	-	206320203	7	5	254	1	0	1	0	1	0	0	0	0	4035	275	10	0	360	0	CTSE	1	206320203	Frame_Shift_Del	DEL	A	TCGA-B8-5164-01A-01D-1421-08	85882924	206320203	42930418	8	16207											
OTOF	9381	broad.mit.edu	37	2	26698885	26698885	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	26698885	A	A	26698885	3	1	254	1	0	0	0	0	1	0	0	0	11310	884	31	4	3382	4	OTOF	2	26698885	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08		26698885	216500488	9	16208											
SNX17	9784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27598997	27598997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	27598997	C	G	27598997	3	3	254	1	0	0	0	0	1	0	0	0	14901	711	25	4	1175	4	SNX17	2	27598997	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	900112	27598997	215600376	10	16209											
STON1-GTF2A1L	286749	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	48809434	48809434	+	Silent	SNP	G	G	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	48809434	G	A	48809434	2	1	254	1	0	0	0	0	0	0	0	1	15329	933	33	2		2	STON1-GTF2A1L	2	48809434	Silent	SNP	G	TCGA-B8-5164-01A-01D-1421-08	21210437	48809434	194389939	11	16210											
WDR92	116143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	68384457	68384457	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	68384457	G	C	68384457	3	2	254	1	0	0	0	0	1	0	0	0	17351	1319	46	4	986	4	WDR92	2	68384457	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	19575023	68384457	174814916	12	16211											
XRCC5	7520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	217001838	217001838	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	217001838	A	C	217001838	3	2	254	1	0	0	0	0	1	0	0	0	17468	333	12	5	1183	5	XRCC5	2	217001838	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08	148617381	217001838	26197535	13	16212											
TTLL4	9654	hgsc.bcm.edu	37	2	219602963	219602964	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	219602964	-	G	219602963	7	5	254	1	0	1	1	0	0	0	0	0	16741	1567	55	0	566	0	TTLL4	2	219602963	Frame_Shift_Ins	INS	-	TCGA-B8-5164-01A-01D-1421-08	2601125	219602963	23596410	14	16213											
NDUFA10	4705	broad.mit.edu	37	2	240960806	240960806	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	240960806	A	A	240960806	3	1	254	1	0	0	0	0	1	0	0	0	10267	623	22	4	831	4	NDUFA10	2	240960806	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	21357843	240960806	2238567	15	16214											
FGD5	152273	broad.mit.edu	37	3	14964675	14964675	+	Silent	SNP	G	C	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	14964675	C	C	14964675	2	2	254	1	0	0	0	0	0	0	0	1	5843	1277	45	4		4	FGD5	3	14964675	Silent	SNP	G	TCGA-B8-5164-01A-01D-1421-08		14964675	183057755	16	16215											
CHDH	55349	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	53853056	53853056	+	Silent	SNP	C	C	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	53853056	C	A	53853056	2	1	254	1	0	0	0	0	0	0	0	1	3335	726	26	4		4	CHDH	3	53853056	Silent	SNP	C	TCGA-B8-5164-01A-01D-1421-08	38888381	53853056	144169374	17	16216											
FLNB	2317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	57994561	57994561	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	57994561	G	C	57994561	3	2	254	1	0	0	0	0	1	0	0	0	5941	933	33	4	272	4	FLNB	3	57994561	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	4141505	57994561	140027869	18	16217											
MYLK	4638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	123451941	123451941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	123451941	T	G	123451941	3	3	254	1	0	0	0	0	1	0	0	0	10063	1435	50	5	4522	5	MYLK	3	123451941	Missense_Mutation	SNP	T	TCGA-B8-5164-01A-01D-1421-08	65457380	123451941	74570489	19	16218											
EEFSEC	60678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	127983506	127983506	+	Missense_Mutation	SNP	C	C	T	rs142548867	byfrequency	TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	127983506	C	T	127983506	3	4	254	1	0	0	0	0	1	0	0	0	4933	652	23	1	682	1	EEFSEC	3	127983506	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	4531565	127983506	70038924	20	16219											
XRN1	54464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	142098968	142098968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	142098968	T	A	142098968	3	1	254	1	0	0	0	0	1	0	0	0	17471	1464	51	5	2529	5	XRN1	3	142098968	Missense_Mutation	SNP	T	TCGA-B8-5164-01A-01D-1421-08	14115462	142098968	55923462	21	16220											
DRD5	1816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	9784959	9784959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	9784959	C	A	9784959	3	1	254	1	0	0	0	0	1	0	0	0	4762	884	31	4	1308	4	DRD5	4	9784959	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08		9784959	181369317	22	16221											
PCDH7	5099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	31144197	31144197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	31144197	C	T	31144197	3	4	254	1	0	0	0	0	1	0	0	0	11523	652	23	1	3589	1	PCDH7	4	31144197	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	21359238	31144197	160010079	23	16222											
C5orf22	55322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	31538433	31538433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	31538433	C	G	31538433	3	3	254	1	0	0	0	0	1	0	0	0	2287	506	18	4	458	4	C5orf22	5	31538433	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08		31538433	149376827	24	16223											
KIF2A	3796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	61643911	61643911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	61643911	C	A	61643911	3	1	254	1	0	0	0	0	1	0	0	0	8304	681	24	4	206	4	KIF2A	5	61643911	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	30105478	61643911	119271349	25	16224											
RGNEF	0	broad.mit.edu;ucsc.edu	37	5	73193844	73193844	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	73193844	A	A	73193844	3	1	254	1	0	0	0	0	1	0	0	0	13296	1377	48	2	4013	2	RGNEF	5	73193844	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	11549933	73193844	107721416	26	16225											
PCDH1	5097	broad.mit.edu;hgsc.bcm.edu	37	5	141243175	141243175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	141243175	C	G	141243175	3	3	254	1	0	0	0	0	1	0	0	0	11513	680	24	4	1088	4	PCDH1	5	141243175	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	68049331	141243175	39672085	27	16226											
ADRB2	154	hgsc.bcm.edu;ucsc.edu	37	5	148207202	148207202	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	-	148207202	A	-	148207202	7	5	254	1	0	1	0	1	0	0	0	0	341	131	5	0	810	0	ADRB2	5	148207202	Frame_Shift_Del	DEL	A	TCGA-B8-5164-01A-01D-1421-08	6964027	148207202	32708058	28	16227											
AFAP1L1	134265	broad.mit.edu;hgsc.bcm.edu	37	5	148685923	148685923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	148685923	G	T	148685923	3	4	254	1	0	0	0	0	1	0	0	0	354	971	34	4	513	4	AFAP1L1	5	148685923	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	478721	148685923	32229337	29	16228											
CPEB4	80315	hgsc.bcm.edu;ucsc.edu	37	5	173316872	173316874	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	-	173316874	AAT	-	173316872	7	5	254	1	0	1	0	1	0	0	0	0	3805	14	1	0	138	0	CPEB4	5	173316872	In_Frame_Del	DEL	AAT	TCGA-B8-5164-01A-01D-1421-08	24630949	173316872	7598388	30	16229											
CDKAL1	54901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	20781422	20781422	+	Silent	SNP	G	G	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	20781422	G	C	20781422	2	2	254	1	0	0	0	0	0	0	0	1	3154	1190	42	4		4	CDKAL1	6	20781422	Silent	SNP	G	TCGA-B8-5164-01A-01D-1421-08		20781422	150333645	31	16230											
TXLNB	167838	hgsc.bcm.edu;ucsc.edu	37	6	139583897	139583899	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	-	139583899	TGA	-	139583897	7	5	254	1	0	1	0	1	0	0	0	0	16800	1580	55	0	1377	0	TXLNB	6	139583897	In_Frame_Del	DEL	TGA	TCGA-B8-5164-01A-01D-1421-08	118802475	139583897	31531170	32	16231											
DNAH11	8701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	21904264	21904264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	21904264	A	C	21904264	3	2	254	1	0	0	0	0	1	0	0	0	4601	304	11	5	11785	5	DNAH11	7	21904264	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08		21904264	137234399	33	16232											
POM121	9883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	72413614	72413614	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	72413614	C	G	72413614	3	3	254	1	0	0	0	0	1	0	0	0	12246	855	30	4	2325	4	POM121	7	72413614	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	50509350	72413614	86725049	34	16233											
ABCB1	5243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	87175282	87175282	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	87175282	G	C	87175282	3	2	254	1	0	0	0	0	1	0	0	0	40	971	34	4	2114	4	ABCB1	7	87175282	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	14761668	87175282	71963381	35	16234											
SLC26A5	375611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	103033397	103033397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	103033397	T	G	103033397	3	3	254	1	0	0	0	0	1	0	0	0	14533	1493	52	5	1231	5	SLC26A5	7	103033397	Missense_Mutation	SNP	T	TCGA-B8-5164-01A-01D-1421-08	15858115	103033397	56105266	36	16235											
OPN1SW	611	broad.mit.edu;hgsc.bcm.edu	37	7	128413772	128413772	+	Silent	SNP	G	G	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	128413772	G	T	128413772	2	4	254	1	0	0	0	0	0	0	0	1	10887	1335	47	4		4	OPN1SW	7	128413772	Silent	SNP	G	TCGA-B8-5164-01A-01D-1421-08	25380375	128413772	30724891	37	16236											
RB1CC1	9821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	53554925	53554925	+	Silent	SNP	G	G	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	53554925	G	A	53554925	2	1	254	1	0	0	0	0	0	0	0	1	13112	1310	46	2		2	RB1CC1	8	53554925	Silent	SNP	G	TCGA-B8-5164-01A-01D-1421-08		53554925	92809097	38	16237											
NSMAF	8439	broad.mit.edu;hgsc.bcm.edu	37	8	59514096	59514096	+	Splice_Site	SNP	T	T	C	rs112233809	alternate_allele	TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	59514096	T	C	59514096	5	2	254	1	0	0	0	0	0	0	1	0	10681	1536	53	3	1697	3	NSMAF	8	59514096	Splice_Site	SNP	T	TCGA-B8-5164-01A-01D-1421-08	5959171	59514096	86849926	39	16238											
DOCK8	81704	hgsc.bcm.edu;ucsc.edu	37	9	418160	418160	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	-	418160	G	-	418160	7	5	254	1	0	1	0	1	0	0	0	0	4695	1000	35	0	3911	0	DOCK8	9	418160	Frame_Shift_Del	DEL	G	TCGA-B8-5164-01A-01D-1421-08		418160	140795271	40	16239											
LINGO2	158038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	27949564	27949564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	27949564	C	T	27949564	3	4	254	1	0	0	0	0	1	0	0	0	8822	884	31	1	718	1	LINGO2	9	27949564	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	27531404	27949564	113263867	41	16240											
DDX58	23586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32480246	32480246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	32480246	A	T	32480246	3	4	254	1	0	0	0	0	1	0	0	0	4377	101	4	5	1060	5	DDX58	9	32480246	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08	4530682	32480246	108733185	42	16241											
ALDOB	229	broad.mit.edu;ucsc.edu	37	9	104192184	104192184	+	Silent	SNP	G	A	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	104192184	A	A	104192184	2	1	254	1	0	0	0	0	0	0	0	1	508	1165	41	2		2	ALDOB	9	104192184	Silent	SNP	G	TCGA-B8-5164-01A-01D-1421-08	71711938	104192184	37021247	43	16242											
SLC2A8	29988	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130167742	130167742	+	Silent	SNP	A	A	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	130167742	A	G	130167742	2	3	254	1	0	0	0	0	0	0	0	1	14564	175	7	3		3	SLC2A8	9	130167742	Silent	SNP	A	TCGA-B8-5164-01A-01D-1421-08	25975558	130167742	11045689	44	16243											
PRKCQ	5588	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	6520965	6520965	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	6520965	A	C	6520965	3	2	254	1	0	0	0	0	1	0	0	0	12525	101	4	5	806	5	PRKCQ	10	6520965	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08		6520965	129013782	45	16244											
HELLS	3070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96350261	96350261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	96350261	A	C	96350261	3	2	254	1	0	0	0	0	1	0	0	0	7053	246	9	5	1634	5	HELLS	10	96350261	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08	89829296	96350261	39184486	46	16245											
C10orf137	26098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	127426983	127426983	+	Silent	SNP	A	A	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	127426983	A	T	127426983	2	4	254	1	0	0	0	0	0	0	0	1	1596	407	15	5		5	C10orf137	10	127426983	Silent	SNP	A	TCGA-B8-5164-01A-01D-1421-08	31076722	127426983	8107764	47	16246											
FOXI2	399823	broad.mit.edu;ucsc.edu	37	10	129536797	129536797	+	Silent	SNP	C	T	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	129536797	T	T	129536797	2	4	254	1	0	0	0	0	0	0	0	1	6017	576	20	2		2	FOXI2	10	129536797	Silent	SNP	C	TCGA-B8-5164-01A-01D-1421-08	2109814	129536797	5997950	48	16247											
CHID1	66005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	869878	869878	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	869878	A	T	869878	3	4	254	1	0	0	0	0	1	0	0	0	3347	420	15	5	23	5	CHID1	11	869878	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08		869878	134136638	49	16248											
VWF	7450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6204658	6204658	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	6204658	A	T	6204658	3	4	254	1	0	0	0	0	1	0	0	0	17258	304	11	5	8004	5	VWF	12	6204658	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08		6204658	127647237	50	16249											
RND1	27289	broad.mit.edu	37	12	49259538	49259538	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	49259538	C	C	49259538	3	2	254	1	0	0	0	0	1	0	0	0	13432	1144	40	4	705	4	RND1	12	49259538	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	43054880	49259538	84592357	51	16250											
LIMA1	51474	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	50571732	50571732	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	50571732	C	T	50571732	4	4	254	1	0	0	0	0	0	1	0	0	8803	624	22	2	888	2	LIMA1	12	50571732	Nonsense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	1312194	50571732	83280163	52	16251											
KRT2	3849	hgsc.bcm.edu	37	12	53045840	53045840	+	Silent	SNP	C	C	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	53045840	C	A	53045840	2	1	254	1	0	0	0	0	0	0	0	1	8464	465	17	4		4	KRT2	12	53045840	Silent	SNP	C	TCGA-B8-5164-01A-01D-1421-08	2474108	53045840	80806055	53	16252											
POMP	51371	broad.mit.edu;hgsc.bcm.edu	37	13	29238707	29238707	+	Splice_Site	SNP	G	G	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	29238707	G	T	29238707	5	4	254	1	0	0	0	0	0	0	1	0	12251	1391	48	4	173	4	POMP	13	29238707	Splice_Site	SNP	G	TCGA-B8-5164-01A-01D-1421-08		29238707	85931171	54	16253											
DZIP1	22873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	96238362	96238362	+	Silent	SNP	T	T	C	rs181395665	by1000genomes	TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	96238362	T	C	96238362	2	2	254	1	0	0	0	0	0	0	0	1	4865	1606	56	3		3	DZIP1	13	96238362	Silent	SNP	T	TCGA-B8-5164-01A-01D-1421-08	66999655	96238362	18931516	55	16254											
C15orf55	256646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	34647722	34647722	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	34647722	G	T	34647722	4	4	254	1	0	0	0	0	0	1	0	0	1805	1175	41	4	1455	4	C15orf55	15	34647722	Nonsense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08		34647722	67883670	56	16255											
DAPK2	23604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	64218210	64218210	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	64218210	C	A	64218210	4	1	254	1	0	0	0	0	0	1	0	0	4238	835	29	4	390	4	DAPK2	15	64218210	Nonsense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	29570488	64218210	38313182	57	16256											
CYP1A2	1544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75042368	75042368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	75042368	G	A	75042368	3	1	254	1	0	0	0	0	1	0	0	0	4152	1203	42	2	291	2	CYP1A2	15	75042368	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	10824158	75042368	27489024	58	16257											
CHD2	1106	hgsc.bcm.edu	37	15	93545457	93545457	+	Silent	SNP	G	G	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	93545457	G	A	93545457	2	1	254	1	0	0	0	0	0	0	0	1	3327	933	33	2		2	CHD2	15	93545457	Silent	SNP	G	TCGA-B8-5164-01A-01D-1421-08	18503089	93545457	8985935	59	16258											
ANKS3	124401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4780097	4780097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	4780097	C	A	4780097	3	1	254	1	0	0	0	0	1	0	0	0	690	477	17	4	1976	4	ANKS3	16	4780097	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08		4780097	85574656	60	16259											
KIAA0430	9665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15711240	15711240	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	15711240	G	C	15711240	3	2	254	1	0	0	0	0	1	0	0	0	8184	1174	41	4	2411	4	KIAA0430	16	15711240	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	10931143	15711240	74643513	61	16260											
SETD1A	9739	broad.mit.edu;hgsc.bcm.edu	37	16	30990969	30990969	+	Missense_Mutation	SNP	C	C	A	rs147948503	byfrequency;alternate_allele	TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	30990969	C	A	30990969	3	1	254	1	0	0	0	0	1	0	0	0	14143	768	27	4	3912	4	SETD1A	16	30990969	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	15279729	30990969	59363784	62	16261											
ITGAD	3681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31435255	31435255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	31435255	T	G	31435255	3	3	254	1	0	0	0	0	1	0	0	0	7891	1432	50	5	3241	5	ITGAD	16	31435255	Missense_Mutation	SNP	T	TCGA-B8-5164-01A-01D-1421-08	444286	31435255	58919498	63	16262											
PRSS54	221191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58314590	58314590	+	Silent	SNP	G	G	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	58314590	G	A	58314590	2	1	254	1	0	0	0	0	0	0	0	1	12643	1020	36	2		2	PRSS54	16	58314590	Silent	SNP	G	TCGA-B8-5164-01A-01D-1421-08	26879335	58314590	32040163	64	16263											
ATP2A3	489	broad.mit.edu;hgsc.bcm.edu	37	17	3851044	3851044	+	Silent	SNP	G	G	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	3851044	G	T	3851044	2	4	254	1	0	0	0	0	0	0	0	1	1138	1086	38	4		4	ATP2A3	17	3851044	Silent	SNP	G	TCGA-B8-5164-01A-01D-1421-08		3851044	77344166	65	16264											
DNAH2	146754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7661862	7661862	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	7661862	A	T	7661862	3	4	254	1	0	0	0	0	1	0	0	0	4604	449	16	5	2151	5	DNAH2	17	7661862	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08	3810818	7661862	73533348	66	16265											
EPN2	22905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	19186485	19186485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	19186485	C	T	19186485	3	4	254	1	0	0	0	0	1	0	0	0	5188	838	29	2	55	2	EPN2	17	19186485	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	11524623	19186485	62008725	67	16266											
MMP28	79148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34093555	34093555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	34093555	G	A	34093555	3	1	254	1	0	0	0	0	1	0	0	0	9672	958	34	2	39	2	MMP28	17	34093555	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	14907070	34093555	47101655	68	16267											
CCDC40	55036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78013722	78013722	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	78013722	G	C	78013722	3	2	254	1	0	0	0	0	1	0	0	0	2814	1261	44	4	215	4	CCDC40	17	78013722	Missense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	43920167	78013722	3181488	69	16268											
SIRT7	51547	broad.mit.edu	37	17	79875994	79875994	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	79875994	T	T	79875994	3	4	254	1	0	0	0	0	1	0	0	0	14356	507	18	2	1228	2	SIRT7	17	79875994	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	1862272	79875994	1319216	70	16269											
ARHGAP28	79822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	6870684	6870684	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	6870684	A	C	6870684	3	2	254	1	0	0	0	0	1	0	0	0	877	14	1	5	448	5	ARHGAP28	18	6870684	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08		6870684	71206564	71	16270											
SLC39A6	25800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	33694147	33694147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	33694147	C	T	33694147	3	4	254	1	0	0	0	0	1	0	0	0	14635	864	30	2	539	2	SLC39A6	18	33694147	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	26823463	33694147	44383101	72	16271											
PTPRS	5802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	5244419	5244419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	5244419	C	A	5244419	3	1	254	1	0	0	0	0	1	0	0	0	12824	623	22	4	4895	4	PTPRS	19	5244419	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08		5244419	53884564	73	16272											
CYP4F12	66002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15784434	15784434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	15784434	C	T	15784434	3	4	254	1	0	0	0	0	1	0	0	0	4189	739	26	2	97	2	CYP4F12	19	15784434	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	10540015	15784434	43344549	74	16273											
PLD3	23646	broad.mit.edu;hgsc.bcm.edu	37	19	40873738	40873738	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	40873738	G	A	40873738	4	1	254	1	0	0	0	0	0	1	0	0	12054	1183	41	2	395	2	PLD3	19	40873738	Nonsense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08	25089304	40873738	18255245	75	16274											
SFRS16	0	broad.mit.edu	37	19	45562555	45562555	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	45562555	A	A	45562555	3	1	254	1	0	0	0	0	1	0	0	0	14185	595	21	4	669	4	SFRS16	19	45562555	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	4688817	45562555	13566428	76	16275											
KLK5	25818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51453328	51453328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	51453328	T	G	51453328	3	3	254	1	0	0	0	0	1	0	0	0	8414	1754	61	5	779	5	KLK5	19	51453328	Missense_Mutation	SNP	T	TCGA-B8-5164-01A-01D-1421-08	5890773	51453328	7675655	77	16276											
FIZ1	84922	broad.mit.edu	37	19	56104632	56104632	+	Silent	SNP	C	T	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	56104632	T	T	56104632	2	4	254	1	0	0	0	0	0	0	0	1	5907	813	29	2		2	FIZ1	19	56104632	Silent	SNP	C	TCGA-B8-5164-01A-01D-1421-08	4651304	56104632	3024351	78	16277											
NLRP4	147945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56370366	56370366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	56370366	A	G	56370366	3	3	254	1	0	0	0	0	1	0	0	0	10486	72	3	3	1613	3	NLRP4	19	56370366	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08	265734	56370366	2758617	79	16278											
CST11	140880	hgsc.bcm.edu;ucsc.edu	37	20	23432483	23432484	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	23432484	-	T	23432483	7	5	254	1	0	1	1	0	0	0	0	0	3973	1020	36	0	121	0	CST11	20	23432483	Frame_Shift_Ins	INS	-	TCGA-B8-5164-01A-01D-1421-08		23432483	39593037	80	16279											
DHX35	60625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	37630475	37630475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	37630475	T	A	37630475	3	1	254	1	0	0	0	0	1	0	0	0	4510	1754	61	5	779	5	DHX35	20	37630475	Missense_Mutation	SNP	T	TCGA-B8-5164-01A-01D-1421-08	14197992	37630475	25395045	81	16280	213	2									
DHX35	60625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	37630476	37630476	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	T	37630476	A	T	37630476	3	4	254	1	0	0	0	0	1	0	0	0	4510	449	16	5	780	5	DHX35	20	37630476	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08	1	37630476	25395044	82	16281	213	2									
ZNFX1	57169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47887899	47887899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	47887899	T	G	47887899	3	3	254	1	0	0	0	0	1	0	0	0	18217	1838	64	5	5354	5	ZNFX1	20	47887899	Missense_Mutation	SNP	T	TCGA-B8-5164-01A-01D-1421-08	10257423	47887899	15137621	83	16282											
LAMA5	3911	hgsc.bcm.edu	37	20	60902342	60902342	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	60902342	C	G	60902342	3	3	254	1	0	0	0	0	1	0	0	0	8616	893	31	4	6200	4	LAMA5	20	60902342	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	13014443	60902342	2123178	84	16283											
ABCG1	9619	broad.mit.edu;hgsc.bcm.edu	37	21	43711704	43711704	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	43711704	A	C	43711704	3	2	254	1	0	0	0	0	1	0	0	0	68	217	8	5	1845	5	ABCG1	21	43711704	Missense_Mutation	SNP	A	TCGA-B8-5164-01A-01D-1421-08		43711704	4418191	85	16284											
MED15	51586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	20921042	20921042	+	Silent	SNP	T	T	C	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	C	20921042	T	C	20921042	2	2	254	1	0	0	0	0	0	0	0	1	9440	1838	64	3		3	MED15	22	20921042	Silent	SNP	T	TCGA-B8-5164-01A-01D-1421-08		20921042	30383524	86	16285											
UXT	8409	broad.mit.edu	37	X	47518230	47518230	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	A	47518230	A	A	47518230	4	1	254	1	0	0	0	0	0	1	0	0	17122	1101	38	1	400	1	UXT	23	47518230	Nonsense_Mutation	SNP	G	TCGA-B8-5164-01A-01D-1421-08		47518230	107752330	87	16286											
PJA1	64219	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	68382325	68382325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5164-01A-01D-1421-08	TCGA-B8-5164-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f8341c0-3a29-4ba5-9ba9-d23aeb845761	c3830c9f-cb3e-4870-9b9d-584a84ddedd7	G	68382325	C	G	68382325	3	3	254	1	0	0	0	0	1	0	0	0	11968	864	30	4	1178	4	PJA1	23	68382325	Missense_Mutation	SNP	C	TCGA-B8-5164-01A-01D-1421-08	20864095	68382325	86888235	88	16287											
VHL	7428	hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	A	rs5030807	bycluster	TCGA-B8-5164-01A-01D-2099-10	TCGA-B8-5164-10A-01W-1476-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq	.	.	PacBio RS	4eaedfa1-0ea0-4c65-8151-246ee30d0281	5f407634-cb71-404f-83a5-92c695fbd62a	A	10183797	T	A	10183797	3	1	255	1	0	0	0	0	1	0	0	0	17174	1551	54	5	268	5	VHL	3	10183797	Missense_Mutation	SNP	T	TCGA-B8-5164-01A-01D-2099-10		10183797	187838633	1	16288											
LGR6	59352	broad.mit.edu;hgsc.bcm.edu	37	1	202287589	202287589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	G	202287589	T	G	202287589	3	3	256	1	0	0	0	0	1	0	0	0	8765	1522	53	5	2375	5	LGR6	1	202287589	Missense_Mutation	SNP	T	TCGA-B8-5165-01A-01D-1421-08		202287589	46963032	1	16289											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188321	10188321	+	Splice_Site	SNP	G	G	T	rs5030814	bycluster;alternate_allele	TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	T	10188321	G	T	10188321	5	4	256	1	0	0	0	0	0	0	1	0	17174	1275	44	4	470	4	VHL	3	10188321	Splice_Site	SNP	G	TCGA-B8-5165-01A-01D-1421-08		10188321	187834109	2	16290											
C3orf62	375341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49314185	49314185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	G	49314185	A	G	49314185	3	3	256	1	0	0	0	0	1	0	0	0	2240	159	6	3	694	3	C3orf62	3	49314185	Missense_Mutation	SNP	A	TCGA-B8-5165-01A-01D-1421-08	39125864	49314185	148708245	3	16291											
CDH18	1016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	19483487	19483487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	C	19483487	G	C	19483487	3	2	256	1	0	0	0	0	1	0	0	0	3105	1328	46	4	575	4	CDH18	5	19483487	Missense_Mutation	SNP	G	TCGA-B8-5165-01A-01D-1421-08		19483487	161431773	4	16292											
SAR1B	51128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	133948437	133948437	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	A	133948437	T	A	133948437	3	1	256	1	0	0	0	0	1	0	0	0	13853	1783	62	5	424	5	SAR1B	5	133948437	Missense_Mutation	SNP	T	TCGA-B8-5165-01A-01D-1421-08	114464950	133948437	46966823	5	16293											
PCDHGB3	56102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140751808	140751808	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	A	140751808	T	A	140751808	3	1	256	1	0	0	0	0	1	0	0	0	11571	1580	55	5	1849	5	PCDHGB3	5	140751808	Missense_Mutation	SNP	T	TCGA-B8-5165-01A-01D-1421-08	6803371	140751808	40163452	6	16294											
SLC34A1	6569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176825284	176825284	+	Silent	SNP	C	C	A	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	A	176825284	C	A	176825284	2	1	256	1	0	0	0	0	0	0	0	1	14580	900	32	4		4	SLC34A1	5	176825284	Silent	SNP	C	TCGA-B8-5165-01A-01D-1421-08	36073476	176825284	4089976	7	16295											
RIPK1	8737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	3113551	3113551	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	A	3113551	T	A	3113551	4	1	256	1	0	0	0	0	0	1	0	0	13393	1821	63	5	2032	5	RIPK1	6	3113551	Nonsense_Mutation	SNP	T	TCGA-B8-5165-01A-01D-1421-08		3113551	168001516	8	16296											
RING1	6015	broad.mit.edu	37	6	33180123	33180123	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	-	33180123	-	-	33180123	7	5	256	1	0	1	0	1	0	0	0	0	13387	247	9	0	1190	0	RING1	6	33180123	Frame_Shift_Del	DEL	A	TCGA-B8-5165-01A-01D-1421-08	30066572	33180123	137934944	9	16297											
TRHR	7201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110131518	110131518	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	C	110131518	A	C	110131518	3	2	256	1	0	0	0	0	1	0	0	0	16492	14	1	5	1037	5	TRHR	8	110131518	Missense_Mutation	SNP	A	TCGA-B8-5165-01A-01D-1421-08		110131518	36232504	10	16298											
C9orf117	286207	broad.mit.edu	37	9	130475074	130475074	+	Silent	SNP	C	A	A	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	A	130475074	A	A	130475074	2	1	256	1	0	0	0	0	0	0	0	1	2453	813	29	4		4	C9orf117	9	130475074	Silent	SNP	C	TCGA-B8-5165-01A-01D-1421-08		130475074	10738357	11	16299											
GSTO1	9446	hgsc.bcm.edu	37	10	106022830	106022832	+	In_Frame_Del	DEL	GAG	GAG	-	rs72323784	bycluster;by1000genomes	TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	-	106022832	GAG	-	106022830	7	5	256	1	0	1	0	1	0	0	0	0	6849	943	33	0	474	0	GSTO1	10	106022830	In_Frame_Del	DEL	GAG	TCGA-B8-5165-01A-01D-1421-08		106022830	29511917	12	16300											
NPAT	4863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108040715	108040715	+	Silent	SNP	C	C	G	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	G	108040715	C	G	108040715	2	3	256	1	0	0	0	0	0	0	0	1	10573	842	30	4		4	NPAT	11	108040715	Silent	SNP	C	TCGA-B8-5165-01A-01D-1421-08		108040715	26965801	13	16301											
SLC37A4	2542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118897701	118897701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	C	118897701	T	C	118897701	3	2	256	1	0	0	0	0	1	0	0	0	14613	1638	57	3	649	3	SLC37A4	11	118897701	Missense_Mutation	SNP	T	TCGA-B8-5165-01A-01D-1421-08	10856986	118897701	16108815	14	16302											
SLC38A1	81539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	46623010	46623010	+	Silent	SNP	T	T	C	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	C	46623010	T	C	46623010	2	2	256	1	0	0	0	0	0	0	0	1	14614	1741	61	3		3	SLC38A1	12	46623010	Silent	SNP	T	TCGA-B8-5165-01A-01D-1421-08		46623010	87228885	15	16303											
KRT84	3890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52774232	52774232	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	G	52774232	C	G	52774232	3	3	256	1	0	0	0	0	1	0	0	0	8505	893	31	4	475	4	KRT84	12	52774232	Missense_Mutation	SNP	C	TCGA-B8-5165-01A-01D-1421-08	6151222	52774232	81077663	16	16304											
ERBB3	2065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56495609	56495609	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	T	56495609	C	T	56495609	4	4	256	1	0	0	0	0	0	1	0	0	5210	528	19	1	4040	1	ERBB3	12	56495609	Nonsense_Mutation	SNP	C	TCGA-B8-5165-01A-01D-1421-08	3721377	56495609	77356286	17	16305											
LRRC37B	114659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30348328	30348328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	T	30348328	C	T	30348328	3	4	256	1	0	0	0	0	1	0	0	0	9001	913	32	2	165	2	LRRC37B	17	30348328	Missense_Mutation	SNP	C	TCGA-B8-5165-01A-01D-1421-08		30348328	50846882	18	16306											
DUSP14	11072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	35872566	35872566	+	Silent	SNP	T	T	C	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	C	35872566	T	C	35872566	2	2	256	1	0	0	0	0	0	0	0	1	4816	1509	53	3		3	DUSP14	17	35872566	Silent	SNP	T	TCGA-B8-5165-01A-01D-1421-08	5524238	35872566	45322644	19	16307											
ZC3H4	23211	broad.mit.edu	37	19	47588443	47588443	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	A	47588443	A	A	47588443	3	1	256	1	0	0	0	0	1	0	0	0	17582	884	31	4	2966	4	ZC3H4	19	47588443	Missense_Mutation	SNP	C	TCGA-B8-5165-01A-01D-1421-08		47588443	11540540	20	16308											
SLC9A6	10479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135080323	135080323	+	Silent	SNP	T	T	C	novel		TCGA-B8-5165-01A-01D-1421-08	TCGA-B8-5165-10A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1579785-5c42-4bda-9825-15ead235f7f4	555a615b-6bd4-45d0-8766-35b8571fef2b	C	135080323	T	C	135080323	2	2	256	1	0	0	0	0	0	0	0	1	14731	1471	51	3		3	SLC9A6	23	135080323	Silent	SNP	T	TCGA-B8-5165-01A-01D-1421-08		135080323	20190237	21	16309											
CELA3A	10136	hgsc.bcm.edu	37	1	22333988	22333988	+	Missense_Mutation	SNP	T	T	G	rs112024506		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	G	22333988	T	G	22333988	3	3	257	1	0	0	0	0	1	0	0	0	3215	1638	57	5	644	5	CELA3A	1	22333988	Missense_Mutation	SNP	T	TCGA-B8-5545-01A-01D-1669-08		22333988	226916633	1	16310											
MAP4K3	8491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	39519948	39519948	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	A	39519948	C	A	39519948	4	1	257	1	0	0	0	0	0	1	0	0	9268	922	32	4	1515	4	MAP4K3	2	39519948	Nonsense_Mutation	SNP	C	TCGA-B8-5545-01A-01D-1669-08		39519948	203679425	2	16311											
SRGAP3	9901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9034602	9034602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	T	9034602	C	T	9034602	3	4	257	1	0	0	0	0	1	0	0	0	15159	623	22	2	765	2	SRGAP3	3	9034602	Missense_Mutation	SNP	C	TCGA-B8-5545-01A-01D-1669-08		9034602	188987828	3	16312											
PPARG	5468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	12422837	12422837	+	Silent	SNP	G	G	A	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	A	12422837	G	A	12422837	2	1	257	1	0	0	0	0	0	0	0	1	12306	962	34	2		2	PPARG	3	12422837	Silent	SNP	G	TCGA-B8-5545-01A-01D-1669-08	3388235	12422837	185599593	4	16313											
PPP2R2C	5522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	6349697	6349697	+	Silent	SNP	C	C	T	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	T	6349697	C	T	6349697	2	4	257	1	0	0	0	0	0	0	0	1	12396	639	23	1		1	PPP2R2C	4	6349697	Silent	SNP	C	TCGA-B8-5545-01A-01D-1669-08		6349697	184804579	5	16314											
NFXL1	152518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	47850290	47850290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	T	47850290	C	T	47850290	3	4	257	1	0	0	0	0	1	0	0	0	10395	835	29	2	113	2	NFXL1	4	47850290	Missense_Mutation	SNP	C	TCGA-B8-5545-01A-01D-1669-08	41500593	47850290	143303986	6	16315											
USO1	8615	hgsc.bcm.edu;ucsc.edu	37	4	76722353	76722353	+	Missense_Mutation	SNP	G	G	A	rs324726	bycluster;byfrequency;by1000genomes	TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	A	76722353	G	A	76722353	3	1	257	1	0	0	0	0	1	0	0	0	17051	1014	35	2	1893	2	USO1	4	76722353	Missense_Mutation	SNP	G	TCGA-B8-5545-01A-01D-1669-08	28872063	76722353	114431923	7	16316											
BMP2K	55589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	79832708	79832708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	G	79832708	A	G	79832708	3	3	257	1	0	0	0	0	1	0	0	0	1460	420	15	3	3107	3	BMP2K	4	79832708	Missense_Mutation	SNP	A	TCGA-B8-5545-01A-01D-1669-08	3110355	79832708	111321568	8	16317											
GMPR	2766	hgsc.bcm.edu	37	6	16295417	16295418	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	C	16295418	-	C	16295417	7	5	257	1	0	1	1	0	0	0	0	0	6503	50	2	0	1072	0	GMPR	6	16295417	Frame_Shift_Ins	INS	-	TCGA-B8-5545-01A-01D-1669-08		16295417	154819650	9	16318											
CASP8AP2	9994	hgsc.bcm.edu;ucsc.edu	37	6	90577024	90577035	+	In_Frame_Del	DEL	AAGACTCCAGAG	AAGACTCCAGAG	-	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	AAGACTCCAGAG	AAGACTCCAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	-	90577035	AAGACTCCAGAG	-	90577024	7	5	257	1	0	1	0	1	0	0	0	0	2680	15	1	0	4041	0	CASP8AP2	6	90577024	In_Frame_Del	DEL	AAGACTCCAGAG	TCGA-B8-5545-01A-01D-1669-08	74281607	90577024	80538043	10	16319											
GLI3	2737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	42116424	42116424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	A	42116424	G	A	42116424	3	1	257	1	0	0	0	0	1	0	0	0	6446	1174	41	2	4390	2	GLI3	7	42116424	Missense_Mutation	SNP	G	TCGA-B8-5545-01A-01D-1669-08		42116424	117022239	11	16320											
TCEB1	6921	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	74858967	74858967	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	T	74858967	G	T	74858967	4	4	257	1	0	0	0	0	0	1	0	0	15691	1372	48	4	105	4	TCEB1	8	74858967	Nonsense_Mutation	SNP	G	TCGA-B8-5545-01A-01D-1669-08		74858967	71505055	12	16321	214	2									
TCEB1	6921	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	74858968	74858968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	A	74858968	T	A	74858968	3	1	257	1	0	0	0	0	1	0	0	0	15691	1638	57	5	106	5	TCEB1	8	74858968	Missense_Mutation	SNP	T	TCGA-B8-5545-01A-01D-1669-08	1	74858968	71505054	13	16322	214	2									
IARS	3376	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95012199	95012199	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	A	95012199	T	A	95012199	3	1	257	1	0	0	0	0	1	0	0	0	7480	1406	49	5	1271	5	IARS	9	95012199	Missense_Mutation	SNP	T	TCGA-B8-5545-01A-01D-1669-08		95012199	46201232	14	16323	215	2									
IARS	3376	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95012201	95012201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	G	95012201	A	G	95012201	3	3	257	1	0	0	0	0	1	0	0	0	7480	43	2	3	1273	3	IARS	9	95012201	Missense_Mutation	SNP	A	TCGA-B8-5545-01A-01D-1669-08	2	95012201	46201230	15	16324	215	2									
CUBN	8029	broad.mit.edu	37	10	16919092	16919092	+	Silent	SNP	A	G	G	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	G	16919092	G	G	16919092	2	3	257	1	0	0	0	0	0	0	0	1	4053	30	2	3		3	CUBN	10	16919092	Silent	SNP	A	TCGA-B8-5545-01A-01D-1669-08		16919092	118615655	16	16325											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61835269	61835269	+	Silent	SNP	C	C	T	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	T	61835269	C	T	61835269	2	4	257	1	0	0	0	0	0	0	0	1	622	564	20	2		2	ANK3	10	61835269	Silent	SNP	C	TCGA-B8-5545-01A-01D-1669-08	44916177	61835269	73699478	17	16326											
COL17A1	1308	hgsc.bcm.edu	37	10	105816869	105816895	+	In_Frame_Del	DEL	GCCACCAACACCGCCACCTCCTCCACT	GCCACCAACACCGCCACCTCCTCCACT	-	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	GCCACCAACACCGCCACCTCCTCCACT	GCCACCAACACCGCCACCTCCTCCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	-	105816895	GCCACCAACACCGCCACCTCCTCCACT	-	105816869	7	5	257	1	0	1	0	1	0	0	0	0	3676	1074	38	0	3324	0	COL17A1	10	105816869	In_Frame_Del	DEL	GCCACCAACACCGCCACCTCCTCCACT	TCGA-B8-5545-01A-01D-1669-08	43981600	105816869	29717878	18	16327											
LGR4	55366	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	27390552	27390552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	A	27390552	G	A	27390552	3	1	257	1	0	0	0	0	1	0	0	0	8763	1174	41	2	1141	2	LGR4	11	27390552	Missense_Mutation	SNP	G	TCGA-B8-5545-01A-01D-1669-08		27390552	107615964	19	16328											
SLITRK6	84189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	86370304	86370304	+	Silent	SNP	G	G	A	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	A	86370304	G	A	86370304	2	1	257	1	0	0	0	0	0	0	0	1	14760	991	35	2		2	SLITRK6	13	86370304	Silent	SNP	G	TCGA-B8-5545-01A-01D-1669-08		86370304	28799574	20	16329											
YLPM1	56252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75230960	75230960	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	G	75230960	T	G	75230960	3	3	257	1	0	0	0	0	1	0	0	0	17498	1403	49	5	770	5	YLPM1	14	75230960	Missense_Mutation	SNP	T	TCGA-B8-5545-01A-01D-1669-08		75230960	32118580	21	16330											
TP53BP1	7158	hgsc.bcm.edu;ucsc.edu	37	15	43712740	43712741	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	-	43712741	AG	-	43712740	7	5	257	1	0	1	0	1	0	0	0	0	16395	69	3	0	1521	0	TP53BP1	15	43712740	Frame_Shift_Del	DEL	AG	TCGA-B8-5545-01A-01D-1669-08		43712740	58818652	22	16331											
ATPAF2	91647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	17929649	17929649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	T	17929649	C	T	17929649	3	4	257	1	0	0	0	0	1	0	0	0	1201	855	30	2	483	2	ATPAF2	17	17929649	Missense_Mutation	SNP	C	TCGA-B8-5545-01A-01D-1669-08		17929649	63265561	23	16332											
SETBP1	26040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	42531246	42531246	+	Silent	SNP	A	A	G	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	G	42531246	A	G	42531246	2	3	257	1	0	0	0	0	0	0	0	1	14142	98	4	3		3	SETBP1	18	42531246	Silent	SNP	A	TCGA-B8-5545-01A-01D-1669-08		42531246	35546002	24	16333											
MBP	4155	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	74728852	74728852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	G	74728852	A	G	74728852	3	3	257	1	0	0	0	0	1	0	0	0	9366	333	12	3	526	3	MBP	18	74728852	Missense_Mutation	SNP	A	TCGA-B8-5545-01A-01D-1669-08	32197606	74728852	3348396	25	16334											
FGD1	2245	broad.mit.edu	37	X	54475272	54475272	+	Silent	SNP	C	T	T	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	T	54475272	T	T	54475272	2	4	257	1	0	0	0	0	0	0	0	1	5839	796	28	2		2	FGD1	23	54475272	Silent	SNP	C	TCGA-B8-5545-01A-01D-1669-08		54475272	100795288	26	16335											
BCORL1	63035	hgsc.bcm.edu	37	X	129149054	129149054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5545-01A-01D-1669-08	TCGA-B8-5545-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	514d2342-64ba-4c9f-9866-63bdbc26fda3	887f29fa-dc06-49d0-8b25-00dbdc7016a6	G	129149054	A	G	129149054	3	3	257	1	0	0	0	0	1	0	0	0	1387	72	3	3	2316	3	BCORL1	23	129149054	Missense_Mutation	SNP	A	TCGA-B8-5545-01A-01D-1669-08	74673782	129149054	26121506	27	16336											
FAM131C	348487	hgsc.bcm.edu	37	1	16386008	16386008	+	Silent	SNP	T	T	C	rs2863452	bycluster;byfrequency;by1000genomes	TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	C	16386008	T	C	16386008	2	2	258	1	0	0	0	0	0	0	0	1	5445	1606	56	3		3	FAM131C	1	16386008	Silent	SNP	T	TCGA-B8-5546-01A-01D-1534-10		16386008	232864613	1	16337											
AIM1L	55057	hgsc.bcm.edu	37	1	26673138	26673139	+	In_Frame_Ins	INS	-	-	CCT	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	CCT	26673139	-	CCT	26673138	7	5	258	1	0	1	1	0	0	0	0	0	431	1334	46	0		0	AIM1L	1	26673138	In_Frame_Ins	INS	-	TCGA-B8-5546-01A-01D-1534-10	10287130	26673138	222577483	2	16338											
TGFBRAP1	9392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	105915065	105915065	+	Silent	SNP	C	C	T	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	T	105915065	C	T	105915065	2	4	258	1	0	0	0	0	0	0	0	1	15836	755	27	1		1	TGFBRAP1	2	105915065	Silent	SNP	C	TCGA-B8-5546-01A-01D-1534-10		105915065	137284308	3	16339											
STEAP3	55240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	120012306	120012306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	A	120012306	G	A	120012306	3	1	258	1	0	0	0	0	1	0	0	0	15291	1116	39	1	1111	1	STEAP3	2	120012306	Missense_Mutation	SNP	G	TCGA-B8-5546-01A-01D-1534-10	14097241	120012306	123187067	4	16340											
CD200R1	131450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	112647851	112647851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	A	112647851	G	A	112647851	3	1	258	1	0	0	0	0	1	0	0	0	2983	1319	46	2	481	2	CD200R1	3	112647851	Missense_Mutation	SNP	G	TCGA-B8-5546-01A-01D-1534-10		112647851	85374579	5	16341											
MUC4	4585	hgsc.bcm.edu	37	3	195508452	195508452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	T	195508452	G	T	195508452	3	4	258	1	0	0	0	0	1	0	0	0	9985	1194	42	4		4	MUC4	3	195508452	Missense_Mutation	SNP	G	TCGA-B8-5546-01A-01D-1534-10	82860601	195508452	2513978	6	16342											
ADCY2	108	hgsc.bcm.edu	37	5	7757684	7757715	+	Frame_Shift_Del	DEL	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC	-	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	-	7757715	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC	-	7757684	7	5	258	1	0	1	0	1	0	0	0	0	294	1348	47	0	2141	0	ADCY2	5	7757684	Frame_Shift_Del	DEL	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC	TCGA-B8-5546-01A-01D-1534-10		7757684	173157576	7	16343											
CAST	831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	96103643	96103643	+	Silent	SNP	T	T	C	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	C	96103643	T	C	96103643	2	2	258	1	0	0	0	0	0	0	0	1	2686	1538	54	3		3	CAST	5	96103643	Silent	SNP	T	TCGA-B8-5546-01A-01D-1534-10	88345959	96103643	84811617	8	16344	216	2									
CAST	831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	96103644	96103644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	T	96103644	C	T	96103644	3	4	258	1	0	0	0	0	1	0	0	0	2686	913	32	2	2447	2	CAST	5	96103644	Missense_Mutation	SNP	C	TCGA-B8-5546-01A-01D-1534-10	1	96103644	84811616	9	16345	216	2									
DNAH8	1769	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	38942198	38942198	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	G	38942198	T	G	38942198	3	3	258	1	0	0	0	0	1	0	0	0	4609	1838	64	5	12398	5	DNAH8	6	38942198	Missense_Mutation	SNP	T	TCGA-B8-5546-01A-01D-1534-10		38942198	132172869	10	16346											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82582250	82582250	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	G	82582250	T	G	82582250	3	3	258	1	0	0	0	0	1	0	0	0	11590	1606	56	5	7510	5	PCLO	7	82582250	Missense_Mutation	SNP	T	TCGA-B8-5546-01A-01D-1534-10		82582250	76556413	11	16347											
COL14A1	7373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	121282409	121282409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	A	121282409	C	A	121282409	3	1	258	1	0	0	0	0	1	0	0	0	3673	507	18	4	3307	4	COL14A1	8	121282409	Missense_Mutation	SNP	C	TCGA-B8-5546-01A-01D-1534-10		121282409	25081613	12	16348											
IGSF22	283284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18729752	18729752	+	Splice_Site	SNP	A	A	G	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	G	18729752	A	G	18729752	5	3	258	1	0	0	0	0	0	0	1	0	7607	173	6	3	911	3	IGSF22	11	18729752	Splice_Site	SNP	A	TCGA-B8-5546-01A-01D-1534-10		18729752	116276764	13	16349											
GOLGA3	2802	broad.mit.edu;ucsc.edu	37	12	133374959	133374959	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	G	133374959	G	G	133374959	3	3	258	1	0	0	0	0	1	0	0	0	6561	680	24	4	2793	4	GOLGA3	12	133374959	Missense_Mutation	SNP	C	TCGA-B8-5546-01A-01D-1534-10		133374959	476936	14	16350											
NEUROD2	4761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37762561	37762561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	T	37762561	C	T	37762561	3	4	258	1	0	0	0	0	1	0	0	0	10356	623	22	2	860	2	NEUROD2	17	37762561	Missense_Mutation	SNP	C	TCGA-B8-5546-01A-01D-1534-10		37762561	43432649	15	16351											
SUSD2	56241	broad.mit.edu	37	22	24577515	24577517	+	In_Frame_Del	DEL	CTG	-	-	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	-	24577517	-	-	24577515	7	5	258	1	0	1	0	1	0	0	0	0	15420	680	24	0	30	0	SUSD2	22	24577515	In_Frame_Del	DEL	CTG	TCGA-B8-5546-01A-01D-1534-10		24577515	26727051	16	16352											
HPS4	89781	broad.mit.edu	37	22	26853885	26853885	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5546-01A-01D-1534-10	TCGA-B8-5546-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e3f75b12-27ee-4d38-bd72-f6e167a25da6	14556f56-ec45-48fe-96ef-cd4ff64ec294	T	26853885	T	T	26853885	3	4	258	1	0	0	0	0	1	0	0	0	7348	1203	42	4	239	4	HPS4	22	26853885	Missense_Mutation	SNP	G	TCGA-B8-5546-01A-01D-1534-10	2276370	26853885	24450681	17	16353											
NPPA	4878	broad.mit.edu;ucsc.edu	37	1	11907351	11907351	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	11907351	T	T	11907351	3	4	259	1	0	0	0	0	1	0	0	0	10598	1203	42	4	194	4	NPPA	1	11907351	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10		11907351	237343270	1	16354											
ARID1A	8289	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	27106271	27106271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	27106271	G	A	27106271	3	1	259	1	0	0	0	0	1	0	0	0	913	1029	36	2	5960	2	ARID1A	1	27106271	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	15198920	27106271	222144350	2	16355											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39801310	39801310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	39801310	C	A	39801310	3	1	259	1	0	0	0	0	1	0	0	0	9151	681	24	4	9141	4	MACF1	1	39801310	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	12695039	39801310	209449311	3	16356											
CCDC30	728621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43055004	43055004	+	Silent	SNP	T	T	C	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	C	43055004	T	C	43055004	2	2	259	1	0	0	0	0	0	0	0	1	2807	1442	50	3		3	CCDC30	1	43055004	Silent	SNP	T	TCGA-B8-5549-01A-01D-1534-10	3253694	43055004	206195617	4	16357											
CCDC30	728621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43111913	43111913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	43111913	C	A	43111913	3	1	259	1	0	0	0	0	1	0	0	0	2807	709	25	4	2048	4	CCDC30	1	43111913	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	56909	43111913	206138708	5	16358											
PLK3	1263	broad.mit.edu	37	1	45269620	45269620	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	45269620	-	-	45269620	7	5	259	1	0	1	0	1	0	0	0	0	12104	726	26	0	1220	0	PLK3	1	45269620	Frame_Shift_Del	DEL	C	TCGA-B8-5549-01A-01D-1534-10	2157707	45269620	203981001	6	16359											
L1TD1	54596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62673128	62673128	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	62673128	T	G	62673128	3	3	259	1	0	0	0	0	1	0	0	0	8596	1780	62	5	830	5	L1TD1	1	62673128	Missense_Mutation	SNP	T	TCGA-B8-5549-01A-01D-1534-10	17403508	62673128	186577493	7	16360											
ASH1L	55870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155385552	155385552	+	Silent	SNP	G	G	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	155385552	G	A	155385552	2	1	259	1	0	0	0	0	0	0	0	1	1041	1136	40	1		1	ASH1L	1	155385552	Silent	SNP	G	TCGA-B8-5549-01A-01D-1534-10	92712424	155385552	93865069	8	16361											
OR6K2	81448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158670428	158670428	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	C	158670428	A	C	158670428	3	2	259	1	0	0	0	0	1	0	0	0	11209	330	12	5	963	5	OR6K2	1	158670428	Missense_Mutation	SNP	A	TCGA-B8-5549-01A-01D-1534-10	3284876	158670428	90580193	9	16362											
MARK1	4139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	220835299	220835299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	220835299	G	T	220835299	3	4	259	1	0	0	0	0	1	0	0	0	9319	1319	46	4	2249	4	MARK1	1	220835299	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	62164871	220835299	28415322	10	16363											
GREB1	9687	broad.mit.edu	37	2	11725906	11725906	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	11725906	T	T	11725906	3	4	259	1	0	0	0	0	1	0	0	0	6767	1319	46	4	1064	4	GREB1	2	11725906	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10		11725906	231473467	11	16364											
GALM	130589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	38903134	38903134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	38903134	G	T	38903134	3	4	259	1	0	0	0	0	1	0	0	0	6212	1174	41	4	277	4	GALM	2	38903134	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	27177228	38903134	204296239	12	16365											
PRKCE	5581	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	46228548	46228548	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	46228548	A	-	46228548	7	5	259	1	0	1	0	1	0	0	0	0	12521	131	5	0	855	0	PRKCE	2	46228548	Frame_Shift_Del	DEL	A	TCGA-B8-5549-01A-01D-1534-10	7325414	46228548	196970825	13	16366											
USP34	9736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61522139	61522139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	61522139	G	A	61522139	3	1	259	1	0	0	0	0	1	0	0	0	17077	1294	45	2	6430	2	USP34	2	61522139	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	15293591	61522139	181677234	14	16367											
IL18RAP	8807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	103067330	103067330	+	Silent	SNP	C	C	T	rs140183707	byfrequency	TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	103067330	C	T	103067330	2	4	259	1	0	0	0	0	0	0	0	1	7655	883	31	1		1	IL18RAP	2	103067330	Silent	SNP	C	TCGA-B8-5549-01A-01D-1534-10	41545191	103067330	140132043	15	16368											
SCN1A	6323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	166909391	166909391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	166909391	C	A	166909391	3	1	259	1	0	0	0	0	1	0	0	0	13927	884	31	4	5452	4	SCN1A	2	166909391	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	63842061	166909391	76289982	16	16369											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191491	10191491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	C	10191491	T	C	10191491	3	2	259	1	0	0	0	0	1	0	0	0	17174	1464	51	3	494	3	VHL	3	10191491	Missense_Mutation	SNP	T	TCGA-B8-5549-01A-01D-1534-10		10191491	187830939	17	16370											
SLC15A2	6565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121659238	121659238	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	121659238	C	G	121659238	3	3	259	1	0	0	0	0	1	0	0	0	14412	913	32	4	1998	4	SLC15A2	3	121659238	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	111467747	121659238	76363192	18	16371											
MAP3K13	9175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	185195185	185195185	+	Splice_Site	SNP	G	G	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	185195185	G	A	185195185	5	1	259	1	0	0	0	0	0	0	1	0	9254	1275	44	2	2544	2	MAP3K13	3	185195185	Splice_Site	SNP	G	TCGA-B8-5549-01A-01D-1534-10	63535947	185195185	12827245	19	16372											
TBC1D9	23158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	141600356	141600356	+	Silent	SNP	C	C	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	141600356	C	T	141600356	2	4	259	1	0	0	0	0	0	0	0	1	15639	898	31	1		1	TBC1D9	4	141600356	Silent	SNP	C	TCGA-B8-5549-01A-01D-1534-10		141600356	49553920	20	16373											
CDH18	1016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	19838883	19838883	+	Silent	SNP	A	A	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	19838883	A	T	19838883	2	4	259	1	0	0	0	0	0	0	0	1	3105	291	11	5		5	CDH18	5	19838883	Silent	SNP	A	TCGA-B8-5549-01A-01D-1534-10		19838883	161076377	21	16374											
NIPBL	25836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	36985915	36985915	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	36985915	G	-	36985915	7	5	259	1	0	1	0	1	0	0	0	0	10435	1000	35	0	2667	0	NIPBL	5	36985915	Frame_Shift_Del	DEL	G	TCGA-B8-5549-01A-01D-1534-10	17147032	36985915	143929345	22	16375											
KIF20A	10112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137520633	137520633	+	Silent	SNP	C	C	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	137520633	C	T	137520633	2	4	259	1	0	0	0	0	0	0	0	1	8293	718	25	2		2	KIF20A	5	137520633	Silent	SNP	C	TCGA-B8-5549-01A-01D-1534-10	100534718	137520633	43394627	23	16376											
ZNF300	91975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150276178	150276179	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	150276179	-	A	150276178	7	5	259	1	0	1	1	0	0	0	0	0	17843	1294	45	0	1195	0	ZNF300	5	150276178	Frame_Shift_Ins	INS	-	TCGA-B8-5549-01A-01D-1534-10	12755545	150276178	30639082	24	16377											
CCNJL	79616	broad.mit.edu	37	5	159680605	159680605	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	159680605	T	T	159680605	3	4	259	1	0	0	0	0	1	0	0	0	2931	1203	42	4	223	4	CCNJL	5	159680605	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	9404427	159680605	21234655	25	16378											
PGBD1	84547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28251758	28251758	+	Silent	SNP	C	C	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	28251758	C	T	28251758	2	4	259	1	0	0	0	0	0	0	0	1	11787	535	19	1		1	PGBD1	6	28251758	Silent	SNP	C	TCGA-B8-5549-01A-01D-1534-10		28251758	142863309	26	16379											
SCAND3	114821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28543685	28543685	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	28543685	T	A	28543685	3	1	259	1	0	0	0	0	1	0	0	0	13889	1783	62	5	3188	5	SCAND3	6	28543685	Missense_Mutation	SNP	T	TCGA-B8-5549-01A-01D-1534-10	291927	28543685	142571382	27	16380											
UNC5CL	222643	broad.mit.edu	37	6	41001862	41001862	+	Silent	SNP	C	T	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	41001862	T	T	41001862	2	4	259	1	0	0	0	0	0	0	0	1	17006	639	23	1		1	UNC5CL	6	41001862	Silent	SNP	C	TCGA-B8-5549-01A-01D-1534-10	12458177	41001862	130113205	28	16381											
TAAR9	134860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	132859640	132859640	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	132859640	T	A	132859640	3	1	259	1	0	0	0	0	1	0	0	0	15506	1493	52	5	214	5	TAAR9	6	132859640	Missense_Mutation	SNP	T	TCGA-B8-5549-01A-01D-1534-10	91857778	132859640	38255427	29	16382											
SNX10	29887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	26411530	26411530	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	26411530	T	-	26411530	7	5	259	1	0	1	0	1	0	0	0	0	14894	1725	60	0	419	0	SNX10	7	26411530	Frame_Shift_Del	DEL	T	TCGA-B8-5549-01A-01D-1534-10		26411530	132727133	30	16383											
EPHB4	2050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100411570	100411570	+	Silent	SNP	C	C	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	100411570	C	T	100411570	2	4	259	1	0	0	0	0	0	0	0	1	5179	581	21	2		2	EPHB4	7	100411570	Silent	SNP	C	TCGA-B8-5549-01A-01D-1534-10	74000040	100411570	58727093	31	16384											
KIAA1147	57189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	141365016	141365016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	141365016	C	A	141365016	3	1	259	1	0	0	0	0	1	0	0	0	8217	797	28	4	460	4	KIAA1147	7	141365016	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	40953446	141365016	17773647	32	16385											
ZFHX4	79776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	77776702	77776702	+	Silent	SNP	G	G	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	77776702	G	A	77776702	2	1	259	1	0	0	0	0	0	0	0	1	17647	962	34	2		2	ZFHX4	8	77776702	Silent	SNP	G	TCGA-B8-5549-01A-01D-1534-10		77776702	68587320	33	16386											
FAM135B	51059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	139164359	139164359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	139164359	C	A	139164359	3	1	259	1	0	0	0	0	1	0	0	0	5453	855	30	4	1893	4	FAM135B	8	139164359	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	61387657	139164359	7199663	34	16387											
MPDZ	8777	hgsc.bcm.edu;ucsc.edu	37	9	13206010	13206011	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	TT	13206011	-	TT	13206010	7	5	259	1	0	1	1	0	0	0	0	0	9729	217	8	0	4890	0	MPDZ	9	13206010	Frame_Shift_Ins	INS	-	TCGA-B8-5549-01A-01D-1534-10		13206010	128007421	35	16388											
ZCCHC6	79670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	88938408	88938408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	88938408	C	G	88938408	3	3	259	1	0	0	0	0	1	0	0	0	17604	922	32	4	2290	4	ZCCHC6	9	88938408	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	75732398	88938408	52275023	36	16389											
SLC35D2	11046	hgsc.bcm.edu	37	9	99126831	99126831	+	Missense_Mutation	SNP	A	A	G	rs147633936		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	99126831	A	G	99126831	3	3	259	1	0	0	0	0	1	0	0	0	14595	231	8	3	859	3	SLC35D2	9	99126831	Missense_Mutation	SNP	A	TCGA-B8-5549-01A-01D-1534-10	10188423	99126831	42086600	37	16390											
ZNF189	7743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	104162271	104162271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	C	104162271	T	C	104162271	3	2	259	1	0	0	0	0	1	0	0	0	17766	1754	61	3	145	3	ZNF189	9	104162271	Missense_Mutation	SNP	T	TCGA-B8-5549-01A-01D-1534-10	5035440	104162271	37051160	38	16391											
TMEM38B	55151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	108483903	108483903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	C	108483903	G	C	108483903	3	2	259	1	0	0	0	0	1	0	0	0	16172	1175	41	4	365	4	TMEM38B	9	108483903	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	4321632	108483903	32729528	39	16392											
OR1L3	26735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125437494	125437494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	125437494	C	T	125437494	3	4	259	1	0	0	0	0	1	0	0	0	10971	739	26	2	88	2	OR1L3	9	125437494	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	16953591	125437494	15775937	40	16393											
GOLGA1	2800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	127650593	127650593	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	127650593	T	G	127650593	3	3	259	1	0	0	0	0	1	0	0	0	6558	1435	50	5	479	5	GOLGA1	9	127650593	Missense_Mutation	SNP	T	TCGA-B8-5549-01A-01D-1534-10	2213099	127650593	13562838	41	16394											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61833421	61833421	+	Silent	SNP	A	A	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	61833421	A	G	61833421	2	3	259	1	0	0	0	0	0	0	0	1	622	340	12	3		3	ANK3	10	61833421	Silent	SNP	A	TCGA-B8-5549-01A-01D-1534-10		61833421	73701326	42	16395											
DCHS1	8642	broad.mit.edu	37	11	6643734	6643734	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	6643734	A	A	6643734	3	1	259	1	0	0	0	0	1	0	0	0	4289	1174	41	2	727	2	DCHS1	11	6643734	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10		6643734	128362782	43	16396											
ATF7IP	55729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14613931	14613931	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	14613931	T	-	14613931	7	5	259	1	0	1	0	1	0	0	0	0	1087	1596	56	0	2691	0	ATF7IP	12	14613931	Frame_Shift_Del	DEL	T	TCGA-B8-5549-01A-01D-1534-10		14613931	119237964	44	16397											
SYT10	341359	hgsc.bcm.edu	37	12	33579216	33579217	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	33579217	-	G	33579216	7	5	259	1	0	1	1	0	0	0	0	0	15478	1567	55	0	1229	0	SYT10	12	33579216	Frame_Shift_Ins	INS	-	TCGA-B8-5549-01A-01D-1534-10	18965285	33579216	100272679	45	16398											
SMARCC2	6601	broad.mit.edu	37	12	56558430	56558430	+	Silent	SNP	A	C	C	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	C	56558430	C	C	56558430	2	2	259	1	0	0	0	0	0	0	0	1	14789	405	14	5		5	SMARCC2	12	56558430	Silent	SNP	A	TCGA-B8-5549-01A-01D-1534-10	22979214	56558430	77293465	46	16399											
AMDHD1	144193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	96360253	96360253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	96360253	A	G	96360253	3	3	259	1	0	0	0	0	1	0	0	0	567	14	1	3	1190	3	AMDHD1	12	96360253	Missense_Mutation	SNP	A	TCGA-B8-5549-01A-01D-1534-10	39801823	96360253	37491642	47	16400											
RILPL1	353116	broad.mit.edu	37	12	123957223	123957223	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	123957223	T	T	123957223	3	4	259	1	0	0	0	0	1	0	0	0	13374	962	34	4	141	4	RILPL1	12	123957223	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	27596970	123957223	9894672	48	16401											
ANKLE2	23141	hgsc.bcm.edu;ucsc.edu	37	12	133324430	133324432	+	In_Frame_Del	DEL	GGT	GGT	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	133324432	GGT	-	133324430	7	5	259	1	0	1	0	1	0	0	0	0	633	1219	43	0	1634	0	ANKLE2	12	133324430	In_Frame_Del	DEL	GGT	TCGA-B8-5549-01A-01D-1534-10	9367207	133324430	527465	49	16402											
SACS	26278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	23915483	23915483	+	Silent	SNP	T	T	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	23915483	T	G	23915483	2	3	259	1	0	0	0	0	0	0	0	1	13817	1625	57	5		5	SACS	13	23915483	Silent	SNP	T	TCGA-B8-5549-01A-01D-1534-10		23915483	91254395	50	16403											
PARP4	143	hgsc.bcm.edu;ucsc.edu	37	13	25021323	25021323	+	Missense_Mutation	SNP	A	A	G	rs73172125	bycluster	TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	25021323	A	G	25021323	3	3	259	1	0	0	0	0	1	0	0	0	11470	463	16	3	2094	3	PARP4	13	25021323	Missense_Mutation	SNP	A	TCGA-B8-5549-01A-01D-1534-10	1105840	25021323	90148555	51	16404											
GPR12	2835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	27333242	27333242	+	Silent	SNP	C	C	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	27333242	C	T	27333242	2	4	259	1	0	0	0	0	0	0	0	1	6642	755	27	1		1	GPR12	13	27333242	Silent	SNP	C	TCGA-B8-5549-01A-01D-1534-10	2311919	27333242	87836636	52	16405											
DHRS4L1	728635	broad.mit.edu;hgsc.bcm.edu	37	14	24518003	24518003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	24518003	A	G	24518003	3	3	259	1	0	0	0	0	1	0	0	0	4495	275	10	3	688	3	DHRS4L1	14	24518003	Missense_Mutation	SNP	A	TCGA-B8-5549-01A-01D-1534-10		24518003	82831537	53	16406											
RALGAPA1	253959	hgsc.bcm.edu	37	14	36140604	36140611	+	Frame_Shift_Del	DEL	AGCTGAAG	AGCTGAAG	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	AGCTGAAG	AGCTGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	36140611	AGCTGAAG	-	36140604	7	5	259	1	0	1	0	1	0	0	0	0	13026	59	3	0	2652	0	RALGAPA1	14	36140604	Frame_Shift_Del	DEL	AGCTGAAG	TCGA-B8-5549-01A-01D-1534-10	11622601	36140604	71208936	54	16407											
EML5	161436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	89093186	89093186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	89093186	C	T	89093186	3	4	259	1	0	0	0	0	1	0	0	0	5102	507	18	2	1237	2	EML5	14	89093186	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	52952582	89093186	18256354	55	16408											
SLC12A6	9990	broad.mit.edu;hgsc.bcm.edu	37	15	34546785	34546785	+	Silent	SNP	A	A	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	34546785	A	G	34546785	2	3	259	1	0	0	0	0	0	0	0	1	14400	456	16	3		3	SLC12A6	15	34546785	Silent	SNP	A	TCGA-B8-5549-01A-01D-1534-10		34546785	67984607	56	16409											
ANXA2	302	broad.mit.edu;hgsc.bcm.edu	37	15	60641324	60641324	+	Silent	SNP	T	T	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	60641324	T	G	60641324	2	3	259	1	0	0	0	0	0	0	0	1	718	1521	53	5		5	ANXA2	15	60641324	Silent	SNP	T	TCGA-B8-5549-01A-01D-1534-10	26094539	60641324	41890068	57	16410											
MGRN1	23295	broad.mit.edu	37	16	4727555	4727555	+	Silent	SNP	G	A	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	4727555	A	A	4727555	2	1	259	1	0	0	0	0	0	0	0	1	9566	1335	47	2		2	MGRN1	16	4727555	Silent	SNP	G	TCGA-B8-5549-01A-01D-1534-10		4727555	85627198	58	16411											
ABCC1	4363	broad.mit.edu;ucsc.edu	37	16	16225792	16225795	+	Splice_Site	DEL	GGTG	-	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	GGTG	GGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	16225795	-	-	16225792	8	5	259	1	0	1	0	1	0	0	1	0	49	1014	35	0	4072	0	ABCC1	16	16225792	Splice_Site	DEL	GGTG	TCGA-B8-5549-01A-01D-1534-10	11498237	16225792	74128961	59	16412											
LCMT1	51451	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	25162930	25162930	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	25162930	C	G	25162930	3	3	259	1	0	0	0	0	1	0	0	0	8685	827	29	4	478	4	LCMT1	16	25162930	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	8937138	25162930	65191823	60	16413											
SLC5A2	6524	broad.mit.edu;hgsc.bcm.edu	37	16	31501699	31501699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	C	31501699	G	C	31501699	3	2	259	1	0	0	0	0	1	0	0	0	14678	1232	43	4	1916	4	SLC5A2	16	31501699	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	6338769	31501699	58853054	61	16414											
CDK10	8558	hgsc.bcm.edu;ucsc.edu	37	16	89757047	89757047	+	RNA	SNP	G	G	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	89757047	G	T	89757047	1	4	259	0	1	0	0	0	0	0	0	0	3127	1363	47	4		4	CDK10	16	89757047	RNA	SNP	G	TCGA-B8-5549-01A-01D-1534-10	58255348	89757047	597706	62	16415											
KRTAP1-3	81850	broad.mit.edu	37	17	39190639	39190639	+	Silent	SNP	G	A	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	39190639	A	A	39190639	2	1	259	1	0	0	0	0	0	0	0	1	8510	1190	42	2		2	KRTAP1-3	17	39190639	Silent	SNP	G	TCGA-B8-5549-01A-01D-1534-10		39190639	42004571	63	16416											
AARSD1	80755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41122331	41122331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	41122331	G	T	41122331	3	4	259	1	0	0	0	0	1	0	0	0	21	1000	35	4	1315	4	AARSD1	17	41122331	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	1931692	41122331	40072879	64	16417											
KCNH6	81033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61607502	61607502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	61607502	G	T	61607502	3	4	259	1	0	0	0	0	1	0	0	0	8043	1116	39	4	368	4	KCNH6	17	61607502	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	20485171	61607502	19587708	65	16418											
SF4	0	broad.mit.edu	37	19	19388598	19388598	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	C	19388598	C	C	19388598	3	2	259	1	0	0	0	0	1	0	0	0	14168	1792	62	3	223	3	SF4	19	19388598	Missense_Mutation	SNP	T	TCGA-B8-5549-01A-01D-1534-10		19388598	39740385	66	16419											
NUMBL	9253	broad.mit.edu	37	19	41173395	41173395	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	41173395	-	-	41173395	7	5	259	1	0	1	0	1	0	0	0	0	10759	1609	56	0	25	0	NUMBL	19	41173395	Frame_Shift_Del	DEL	T	TCGA-B8-5549-01A-01D-1534-10	21784797	41173395	17955588	67	16420											
PRR12	57479	broad.mit.edu	37	19	50128756	50128756	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	-	50128756	-	-	50128756	7	5	259	1	0	1	0	1	0	0	0	0	12594	991	35	0	6057	0	PRR12	19	50128756	Frame_Shift_Del	DEL	G	TCGA-B8-5549-01A-01D-1534-10	8955361	50128756	9000227	68	16421											
ZNF761	388561	broad.mit.edu;hgsc.bcm.edu	37	19	53959771	53959771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	53959771	C	T	53959771	3	4	259	1	0	0	0	0	1	0	0	0	18148	668	24	2	2021	2	ZNF761	19	53959771	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10	3831015	53959771	5169212	69	16422											
RRBP1	6238	broad.mit.edu;ucsc.edu	37	20	17605265	17605265	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	G	17605265	G	G	17605265	3	3	259	1	0	0	0	0	1	0	0	0	13691	893	31	4	1181	4	RRBP1	20	17605265	Missense_Mutation	SNP	C	TCGA-B8-5549-01A-01D-1534-10		17605265	45420255	70	16423											
ENTHD1	150350	broad.mit.edu;ucsc.edu	37	22	40231918	40231918	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	40231918	T	T	40231918	3	4	259	1	0	0	0	0	1	0	0	0	5139	43	2	5	1201	5	ENTHD1	22	40231918	Missense_Mutation	SNP	A	TCGA-B8-5549-01A-01D-1534-10		40231918	11072648	71	16424											
DACH2	117154	broad.mit.edu	37	X	86069820	86069820	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	T	86069820	T	T	86069820	3	4	259	1	0	0	0	0	1	0	0	0	4223	1203	42	4	1705	4	DACH2	23	86069820	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10		86069820	69200740	72	16425											
TCEAL8	90843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	102508844	102508844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5549-01A-01D-1534-10	TCGA-B8-5549-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a62a0016-8cbe-4ed0-8836-21c72006d82a	a2bcbda0-dba7-456a-aeca-0465519917de	A	102508844	G	A	102508844	3	1	259	1	0	0	0	0	1	0	0	0	15689	1058	37	1	293	1	TCEAL8	23	102508844	Missense_Mutation	SNP	G	TCGA-B8-5549-01A-01D-1534-10	16439024	102508844	52761716	73	16426											
TMCO4	255104	hgsc.bcm.edu;ucsc.edu	37	1	20082231	20082231	+	Silent	SNP	G	G	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	20082231	G	A	20082231	2	1	260	1	0	0	0	0	0	0	0	1	16010	1045	37	1		1	TMCO4	1	20082231	Silent	SNP	G	TCGA-B8-5550-01A-01D-1534-10		20082231	229168390	1	16427											
ZCCHC17	51538	hgsc.bcm.edu;ucsc.edu	37	1	31836934	31836934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	31836934	A	C	31836934	3	2	260	1	0	0	0	0	1	0	0	0	17597	275	10	5	646	5	ZCCHC17	1	31836934	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	11754703	31836934	217413687	2	16428											
WDR78	79819	hgsc.bcm.edu	37	1	67390428	67390428	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	67390428	T	A	67390428	3	1	260	1	0	0	0	0	1	0	0	0	17340	1838	64	5	2584	5	WDR78	1	67390428	Missense_Mutation	SNP	T	TCGA-B8-5550-01A-01D-1534-10	35553494	67390428	181860193	3	16429											
BRDT	676	hgsc.bcm.edu;ucsc.edu	37	1	92445158	92445158	+	Silent	SNP	G	G	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	92445158	G	A	92445158	2	1	260	1	0	0	0	0	0	0	0	1	1510	1045	37	1		1	BRDT	1	92445158	Silent	SNP	G	TCGA-B8-5550-01A-01D-1534-10	25054730	92445158	156805463	4	16430											
EPS8L3	79574	hgsc.bcm.edu;ucsc.edu	37	1	110300154	110300154	+	Silent	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	110300154	C	T	110300154	2	4	260	1	0	0	0	0	0	0	0	1	5199	680	24	2		2	EPS8L3	1	110300154	Silent	SNP	C	TCGA-B8-5550-01A-01D-1534-10	17854996	110300154	138950467	5	16431											
FAM46C	54855	hgsc.bcm.edu;ucsc.edu	37	1	118166327	118166327	+	Silent	SNP	G	G	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	118166327	G	T	118166327	2	4	260	1	0	0	0	0	0	0	0	1	5574	1103	39	4		4	FAM46C	1	118166327	Silent	SNP	G	TCGA-B8-5550-01A-01D-1534-10	7866173	118166327	131084294	6	16432											
SPAG17	200162	hgsc.bcm.edu;ucsc.edu	37	1	118558649	118558649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	118558649	T	A	118558649	3	1	260	1	0	0	0	0	1	0	0	0	14992	1783	62	5	2525	5	SPAG17	1	118558649	Missense_Mutation	SNP	T	TCGA-B8-5550-01A-01D-1534-10	392322	118558649	130691972	7	16433											
NOTCH2	4853	hgsc.bcm.edu;ucsc.edu	37	1	120491750	120491750	+	Splice_Site	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	120491750	C	A	120491750	5	1	260	1	0	0	0	0	0	0	1	0	10555	695	24	4	5012	4	NOTCH2	1	120491750	Splice_Site	SNP	C	TCGA-B8-5550-01A-01D-1534-10	1933101	120491750	128758871	8	16434											
GABPB2	126626	hgsc.bcm.edu;ucsc.edu	37	1	151079598	151079598	+	Silent	SNP	C	C	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	151079598	C	G	151079598	2	3	260	1	0	0	0	0	0	0	0	1	6166	581	21	4		4	GABPB2	1	151079598	Silent	SNP	C	TCGA-B8-5550-01A-01D-1534-10	30587848	151079598	98171023	9	16435											
CRB1	23418	hgsc.bcm.edu;ucsc.edu	37	1	197396890	197396890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	197396890	A	T	197396890	3	4	260	1	0	0	0	0	1	0	0	0	3850	130	5	5	2461	5	CRB1	1	197396890	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	46317292	197396890	51853731	10	16436											
OR13G1	441933	hgsc.bcm.edu;ucsc.edu	37	1	247835536	247835536	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	-	247835536	C	-	247835536	7	5	260	1	0	1	0	1	0	0	0	0	10949	507	18	0	119	0	OR13G1	1	247835536	Frame_Shift_Del	DEL	C	TCGA-B8-5550-01A-01D-1534-10	50438646	247835536	1415085	11	16437											
PGBD2	267002	hgsc.bcm.edu;ucsc.edu	37	1	249212354	249212354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	249212354	A	C	249212354	3	2	260	1	0	0	0	0	1	0	0	0	11788	449	16	5	1577	5	PGBD2	1	249212354	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	1376818	249212354	38267	12	16438											
AFTPH	54812	hgsc.bcm.edu;ucsc.edu	37	2	64779745	64779769	+	Frame_Shift_Del	DEL	AGTTGGTTCTCCCAAAGAAGAAAGT	AGTTGGTTCTCCCAAAGAAGAAAGT	-	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	AGTTGGTTCTCCCAAAGAAGAAAGT	AGTTGGTTCTCCCAAAGAAGAAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	-	64779769	AGTTGGTTCTCCCAAAGAAGAAAGT	-	64779745	7	5	260	1	0	1	0	1	0	0	0	0	364	69	3	0	1139	0	AFTPH	2	64779745	Frame_Shift_Del	DEL	AGTTGGTTCTCCCAAAGAAGAAAGT	TCGA-B8-5550-01A-01D-1534-10		64779745	178419628	13	16439											
ANTXR1	84168	hgsc.bcm.edu;ucsc.edu	37	2	69409628	69409628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	69409628	C	T	69409628	3	4	260	1	0	0	0	0	1	0	0	0	711	884	31	1	1328	1	ANTXR1	2	69409628	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	4629883	69409628	173789745	14	16440											
NAT8B	51471	hgsc.bcm.edu;ucsc.edu	37	2	73928331	73928331	+	Silent	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	73928331	C	T	73928331	2	4	260	1	0	0	0	0	0	0	0	1	10187	726	26	2		2	NAT8B	2	73928331	Silent	SNP	C	TCGA-B8-5550-01A-01D-1534-10	4518703	73928331	169271042	15	16441											
POLR1B	84172	hgsc.bcm.edu;ucsc.edu	37	2	113316975	113316975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	113316975	C	T	113316975	3	4	260	1	0	0	0	0	1	0	0	0	12217	739	26	2	1470	2	POLR1B	2	113316975	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	39388644	113316975	129882398	16	16442											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179595296	179595296	+	Silent	SNP	T	T	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	179595296	T	C	179595296	2	2	260	1	0	0	0	0	0	0	0	1	16747	1451	51	3		3	TTN	2	179595296	Silent	SNP	T	TCGA-B8-5550-01A-01D-1534-10	66278321	179595296	63604077	17	16443											
PIKFYVE	200576	hgsc.bcm.edu;ucsc.edu	37	2	209136347	209136347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	209136347	C	A	209136347	3	1	260	1	0	0	0	0	1	0	0	0	11931	681	24	4	106	4	PIKFYVE	2	209136347	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	29541051	209136347	34063026	18	16444											
KIF1A	547	hgsc.bcm.edu;ucsc.edu	37	2	241725926	241725926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	241725926	C	A	241725926	3	1	260	1	0	0	0	0	1	0	0	0	8290	797	28	4	4806	4	KIF1A	2	241725926	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	32589579	241725926	1473447	19	16445											
BHLHE40	8553	hgsc.bcm.edu;ucsc.edu	37	3	5022085	5022085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	5022085	A	G	5022085	3	3	260	1	0	0	0	0	1	0	0	0	1423	131	5	3	260	3	BHLHE40	3	5022085	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10		5022085	193000345	20	16446											
STX19	415117	hgsc.bcm.edu;ucsc.edu	37	3	93733337	93733337	+	Silent	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	93733337	C	T	93733337	2	4	260	1	0	0	0	0	0	0	0	1	15354	564	20	2		2	STX19	3	93733337	Silent	SNP	C	TCGA-B8-5550-01A-01D-1534-10	88711252	93733337	104289093	21	16447											
MUC4	4585	hgsc.bcm.edu	37	3	195507215	195507262	+	In_Frame_Del	DEL	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	-	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	-	195507262	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	-	195507215	7	5	260	1	0	1	0	1	0	0	0	0	9985	1174	41	0		0	MUC4	3	195507215	In_Frame_Del	DEL	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	TCGA-B8-5550-01A-01D-1534-10	101773878	195507215	2515215	22	16448											
AASDH	132949	hgsc.bcm.edu;ucsc.edu	37	4	57216203	57216203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	57216203	C	A	57216203	3	1	260	1	0	0	0	0	1	0	0	0	22	913	32	4	1602	4	AASDH	4	57216203	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10		57216203	133938073	23	16449											
SPP1	6696	hgsc.bcm.edu;ucsc.edu	37	4	88902880	88902880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	88902880	A	G	88902880	3	3	260	1	0	0	0	0	1	0	0	0	15098	333	12	3	488	3	SPP1	4	88902880	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	31686677	88902880	102251396	24	16450											
PCDH18	54510	hgsc.bcm.edu;ucsc.edu	37	4	138452585	138452585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	138452585	C	T	138452585	3	4	260	1	0	0	0	0	1	0	0	0	11520	913	32	2	2765	2	PCDH18	4	138452585	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	49549705	138452585	52701691	25	16451											
C4orf49	0	hgsc.bcm.edu;ucsc.edu	37	4	140188044	140188044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	140188044	C	A	140188044	3	1	260	1	0	0	0	0	1	0	0	0	2277	680	24	4	294	4	C4orf49	4	140188044	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	1735459	140188044	50966232	26	16452											
FAT1	2195	hgsc.bcm.edu;ucsc.edu	37	4	187539377	187539377	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	187539377	T	G	187539377	3	3	260	1	0	0	0	0	1	0	0	0	5696	1551	54	5	5475	5	FAT1	4	187539377	Missense_Mutation	SNP	T	TCGA-B8-5550-01A-01D-1534-10	47351333	187539377	3614899	27	16453											
DNAH5	1767	hgsc.bcm.edu;ucsc.edu	37	5	13717541	13717541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	13717541	C	A	13717541	3	1	260	1	0	0	0	0	1	0	0	0	4606	680	24	4	1314	4	DNAH5	5	13717541	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10		13717541	167197719	28	16454											
TTC23L	153657	hgsc.bcm.edu;ucsc.edu	37	5	34880314	34880314	+	Silent	SNP	T	T	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	34880314	T	C	34880314	2	2	260	1	0	0	0	0	0	0	0	1	16703	1635	57	3		3	TTC23L	5	34880314	Silent	SNP	T	TCGA-B8-5550-01A-01D-1534-10	21162773	34880314	146034946	29	16455											
AQPEP	206338	hgsc.bcm.edu;ucsc.edu	37	5	115348099	115348099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	115348099	T	A	115348099	3	1	260	1	0	0	0	0	1	0	0	0	834	1406	49	5	2334	5	AQPEP	5	115348099	Missense_Mutation	SNP	T	TCGA-B8-5550-01A-01D-1534-10	80467785	115348099	65567161	30	16456											
PCDHB4	56131	hgsc.bcm.edu	37	5	140502934	140502934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	140502934	C	A	140502934	3	1	260	1	0	0	0	0	1	0	0	0	11551	595	21	4	1356	4	PCDHB4	5	140502934	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	25154835	140502934	40412326	31	16457											
ARHGAP26	23092	hgsc.bcm.edu;ucsc.edu	37	5	142500712	142500712	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	142500712	G	C	142500712	3	2	260	1	0	0	0	0	1	0	0	0	875	1014	35	4	1768	4	ARHGAP26	5	142500712	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	1997778	142500712	38414548	32	16458											
SPINK5	11005	hgsc.bcm.edu;ucsc.edu	37	5	147505289	147505289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	147505289	G	A	147505289	3	1	260	1	0	0	0	0	1	0	0	0	15074	1291	45	2	2963	2	SPINK5	5	147505289	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	5004577	147505289	33409971	33	16459											
SPARC	6678	hgsc.bcm.edu;ucsc.edu	37	5	151049279	151049279	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	-	151049279	C	-	151049279	7	5	260	1	0	1	0	1	0	0	0	0	15007	864	30	0	534	0	SPARC	5	151049279	Frame_Shift_Del	DEL	C	TCGA-B8-5550-01A-01D-1534-10	3543990	151049279	29865981	34	16460											
CYFIP2	26999	hgsc.bcm.edu;ucsc.edu	37	5	156750963	156750963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	156750963	T	C	156750963	3	2	260	1	0	0	0	0	1	0	0	0	4140	1493	52	3	1764	3	CYFIP2	5	156750963	Missense_Mutation	SNP	T	TCGA-B8-5550-01A-01D-1534-10	5701684	156750963	24164297	35	16461											
CPEB4	80315	hgsc.bcm.edu;ucsc.edu	37	5	173317715	173317715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	-	173317715	C	-	173317715	7	5	260	1	0	1	0	1	0	0	0	0	3805	739	26	0	981	0	CPEB4	5	173317715	Frame_Shift_Del	DEL	C	TCGA-B8-5550-01A-01D-1534-10	16566752	173317715	7597545	36	16462											
DNAH8	1769	hgsc.bcm.edu;ucsc.edu	37	6	38881667	38881667	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	38881667	T	A	38881667	3	1	260	1	0	0	0	0	1	0	0	0	4609	1551	54	5	9501	5	DNAH8	6	38881667	Missense_Mutation	SNP	T	TCGA-B8-5550-01A-01D-1534-10		38881667	132233400	37	16463											
IL17A	3605	hgsc.bcm.edu;ucsc.edu	37	6	52054066	52054066	+	Silent	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	52054066	C	A	52054066	2	1	260	1	0	0	0	0	0	0	0	1	7641	610	22	4		4	IL17A	6	52054066	Silent	SNP	C	TCGA-B8-5550-01A-01D-1534-10	13172399	52054066	119061001	38	16464											
DSE	29940	hgsc.bcm.edu;ucsc.edu	37	6	116757866	116757866	+	Silent	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	116757866	C	T	116757866	2	4	260	1	0	0	0	0	0	0	0	1	4776	564	20	2		2	DSE	6	116757866	Silent	SNP	C	TCGA-B8-5550-01A-01D-1534-10	64703800	116757866	54357201	39	16465											
ROS1	6098	hgsc.bcm.edu;ucsc.edu	37	6	117718129	117718129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	117718129	G	T	117718129	3	4	260	1	0	0	0	0	1	0	0	0	13544	1377	48	4	6463	4	ROS1	6	117718129	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	960263	117718129	53396938	40	16466											
C7orf10	79783	hgsc.bcm.edu;ucsc.edu	37	7	40488943	40488943	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	40488943	G	C	40488943	3	2	260	1	0	0	0	0	1	0	0	0	2378	1319	46	4	822	4	C7orf10	7	40488943	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10		40488943	118649720	41	16467											
AKAP9	10142	hgsc.bcm.edu;ucsc.edu	37	7	91630212	91630212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	91630212	G	T	91630212	3	4	260	1	0	0	0	0	1	0	0	0	459	991	35	4	1011	4	AKAP9	7	91630212	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	51141269	91630212	67508451	42	16468											
AKAP9	10142	hgsc.bcm.edu;ucsc.edu	37	7	91724470	91724470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	91724470	G	T	91724470	3	4	260	1	0	0	0	0	1	0	0	0	459	1174	41	4	9870	4	AKAP9	7	91724470	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	94258	91724470	67414193	43	16469											
GNG11	2791	hgsc.bcm.edu;ucsc.edu	37	7	93551485	93551485	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	93551485	G	C	93551485	3	2	260	1	0	0	0	0	1	0	0	0	6531	991	35	4	38	4	GNG11	7	93551485	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	1827015	93551485	65587178	44	16470											
EPHB4	2050	hgsc.bcm.edu;ucsc.edu	37	7	100405125	100405125	+	Silent	SNP	G	G	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	100405125	G	C	100405125	2	2	260	1	0	0	0	0	0	0	0	1	5179	1103	39	4		4	EPHB4	7	100405125	Silent	SNP	G	TCGA-B8-5550-01A-01D-1534-10	6853640	100405125	58733538	45	16471											
IQUB	154865	hgsc.bcm.edu;ucsc.edu	37	7	123143012	123143012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	123143012	A	G	123143012	3	3	260	1	0	0	0	0	1	0	0	0	7827	130	5	3	1558	3	IQUB	7	123143012	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	22737887	123143012	35995651	46	16472											
KIF13B	23303	hgsc.bcm.edu;ucsc.edu	37	8	28976473	28976473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	-	28976473	G	-	28976473	7	5	260	1	0	1	0	1	0	0	0	0	8282	1348	47	0	1952	0	KIF13B	8	28976473	Frame_Shift_Del	DEL	G	TCGA-B8-5550-01A-01D-1534-10		28976473	117387549	47	16473											
RAB2A	5862	hgsc.bcm.edu	37	8	61471447	61471447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	61471447	A	T	61471447	3	4	260	1	0	0	0	0	1	0	0	0	12930	275	10	5	89	5	RAB2A	8	61471447	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	32494974	61471447	84892575	48	16474											
FAM91A1	157769	hgsc.bcm.edu;ucsc.edu	37	8	124799957	124799957	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	124799957	G	C	124799957	3	2	260	1	0	0	0	0	1	0	0	0	5658	1020	36	4	1299	4	FAM91A1	8	124799957	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	63328510	124799957	21564065	49	16475											
KLHL9	55958	hgsc.bcm.edu;ucsc.edu	37	9	21334022	21334022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	21334022	C	T	21334022	3	4	260	1	0	0	0	0	1	0	0	0	8403	710	25	2	1020	2	KLHL9	9	21334022	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10		21334022	119879409	50	16476											
ALDH1A1	216	hgsc.bcm.edu;ucsc.edu	37	9	75545843	75545843	+	Silent	SNP	T	T	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	75545843	T	C	75545843	2	2	260	1	0	0	0	0	0	0	0	1	490	1393	49	3		3	ALDH1A1	9	75545843	Silent	SNP	T	TCGA-B8-5550-01A-01D-1534-10	54211821	75545843	65667588	51	16477											
AKNA	80709	hgsc.bcm.edu;ucsc.edu	37	9	117130825	117130825	+	Silent	SNP	T	T	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	117130825	T	A	117130825	2	1	260	1	0	0	0	0	0	0	0	1	463	1770	62	5		5	AKNA	9	117130825	Silent	SNP	T	TCGA-B8-5550-01A-01D-1534-10	41584982	117130825	24082606	52	16478											
C10orf140	0	hgsc.bcm.edu;ucsc.edu	37	10	21804074	21804074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	21804074	G	A	21804074	3	1	260	1	0	0	0	0	1	0	0	0	1597	942	33	2	52	2	C10orf140	10	21804074	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10		21804074	113730673	53	16479											
MYOZ1	58529	hgsc.bcm.edu	37	10	75393823	75393823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	75393823	C	T	75393823	3	4	260	1	0	0	0	0	1	0	0	0	10102	869	30	2	404	2	MYOZ1	10	75393823	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	53589749	75393823	60140924	54	16480											
IFIT1	3434	hgsc.bcm.edu;ucsc.edu	37	10	91162803	91162803	+	Silent	SNP	A	A	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	91162803	A	T	91162803	2	4	260	1	0	0	0	0	0	0	0	1	7528	175	7	5		5	IFIT1	10	91162803	Silent	SNP	A	TCGA-B8-5550-01A-01D-1534-10	15768980	91162803	44371944	55	16481											
MRGPRX3	117195	hgsc.bcm.edu;ucsc.edu	37	11	18159153	18159153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	18159153	C	T	18159153	3	4	260	1	0	0	0	0	1	0	0	0	9775	623	22	2	406	2	MRGPRX3	11	18159153	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10		18159153	116847363	56	16482											
OR8I2	120586	hgsc.bcm.edu	37	11	55860880	55860880	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	55860880	T	G	55860880	3	3	260	1	0	0	0	0	1	0	0	0	11247	1609	56	5	99	5	OR8I2	11	55860880	Missense_Mutation	SNP	T	TCGA-B8-5550-01A-01D-1534-10	37701727	55860880	79145636	57	16483											
DAK	26007	hgsc.bcm.edu;ucsc.edu	37	11	61113379	61113379	+	Silent	SNP	A	A	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	61113379	A	G	61113379	2	3	260	1	0	0	0	0	0	0	0	1	4230	175	7	3		3	DAK	11	61113379	Silent	SNP	A	TCGA-B8-5550-01A-01D-1534-10	5252499	61113379	73893137	58	16484											
USP35	57558	hgsc.bcm.edu;ucsc.edu	37	11	77921086	77921086	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	77921086	C	T	77921086	4	4	260	1	0	0	0	0	0	1	0	0	17078	711	25	2	2219	2	USP35	11	77921086	Nonsense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	16807707	77921086	57085430	59	16485											
SCN3B	55800	hgsc.bcm.edu	37	11	123513374	123513374	+	Silent	SNP	G	G	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	123513374	G	A	123513374	2	1	260	1	0	0	0	0	0	0	0	1	13932	1140	40	1		1	SCN3B	11	123513374	Silent	SNP	G	TCGA-B8-5550-01A-01D-1534-10	45592288	123513374	11493142	60	16486											
HEPACAM	220296	hgsc.bcm.edu;ucsc.edu	37	11	124792312	124792312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	124792312	G	A	124792312	3	1	260	1	0	0	0	0	1	0	0	0	7059	1232	43	2	338	2	HEPACAM	11	124792312	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	1278938	124792312	10214204	61	16487											
C1R	715	hgsc.bcm.edu;ucsc.edu	37	12	7189386	7189386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	7189386	C	T	7189386	3	4	260	1	0	0	0	0	1	0	0	0	1974	739	26	2		2	C1R	12	7189386	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10		7189386	126662509	62	16488											
SLC2A3	6515	hgsc.bcm.edu	37	12	8075533	8075533	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	8075533	A	C	8075533	3	2	260	1	0	0	0	0	1	0	0	0	14558	188	7	5	342	5	SLC2A3	12	8075533	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	886147	8075533	125776362	63	16489											
PZP	5858	hgsc.bcm.edu	37	12	9317897	9317897	+	Silent	SNP	G	G	A	rs139247183		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	9317897	G	A	9317897	2	1	260	1	0	0	0	0	0	0	0	1	12882	987	35	2		2	PZP	12	9317897	Silent	SNP	G	TCGA-B8-5550-01A-01D-1534-10	1242364	9317897	124533998	64	16490											
MANSC1	54682	hgsc.bcm.edu;ucsc.edu	37	12	12483181	12483181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	12483181	C	T	12483181	3	4	260	1	0	0	0	0	1	0	0	0	9231	507	18	2	223	2	MANSC1	12	12483181	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	3165284	12483181	121368714	65	16491											
PRIM1	5557	hgsc.bcm.edu;ucsc.edu	37	12	57137871	57137871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	57137871	C	T	57137871	3	4	260	1	0	0	0	0	1	0	0	0	12500	835	29	2	678	2	PRIM1	12	57137871	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	44654690	57137871	76714024	66	16492											
CAPS2	84698	hgsc.bcm.edu;ucsc.edu	37	12	75716783	75716783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	75716783	G	A	75716783	3	1	260	1	0	0	0	0	1	0	0	0	2640	1174	41	2	1410	2	CAPS2	12	75716783	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	18578912	75716783	58135112	67	16493											
APPL2	55198	hgsc.bcm.edu;ucsc.edu	37	12	105582070	105582070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	105582070	C	G	105582070	3	3	260	1	0	0	0	0	1	0	0	0	818	507	18	4	399	4	APPL2	12	105582070	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	29865287	105582070	28269825	68	16494											
FBXL3	26224	hgsc.bcm.edu;ucsc.edu	37	13	77595752	77595752	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	77595752	C	G	77595752	3	3	260	1	0	0	0	0	1	0	0	0	5727	835	29	4	1058	4	FBXL3	13	77595752	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10		77595752	37574126	69	16495											
LTBP2	4053	hgsc.bcm.edu	37	14	75052560	75052560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	75052560	G	A	75052560	3	1	260	1	0	0	0	0	1	0	0	0	9081	971	34	2	4774	2	LTBP2	14	75052560	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10		75052560	32296980	70	16496											
TTC7B	145567	hgsc.bcm.edu;ucsc.edu	37	14	91155923	91155923	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	91155923	T	G	91155923	3	3	260	1	0	0	0	0	1	0	0	0	16725	1638	57	5	1676	5	TTC7B	14	91155923	Missense_Mutation	SNP	T	TCGA-B8-5550-01A-01D-1534-10	16103363	91155923	16193617	71	16497											
SERINC4	619189	hgsc.bcm.edu;ucsc.edu	37	15	44087392	44087392	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	44087392	C	A	44087392	4	1	260	1	0	0	0	0	0	1	0	0	14095	864	30	4	197	4	SERINC4	15	44087392	Nonsense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10		44087392	58444000	72	16498											
WFIKKN1	117166	hgsc.bcm.edu	37	16	681423	681423	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	681423	A	T	681423	3	4	260	1	0	0	0	0	1	0	0	0	17370	202	7	5	172	5	WFIKKN1	16	681423	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10		681423	89673330	73	16499											
CMTM2	146225	hgsc.bcm.edu;ucsc.edu	37	16	66621879	66621879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	66621879	C	A	66621879	3	1	260	1	0	0	0	0	1	0	0	0	3585	594	21	4	618	4	CMTM2	16	66621879	Missense_Mutation	SNP	C	TCGA-B8-5550-01A-01D-1534-10	65940456	66621879	23732874	74	16500											
GLG1	2734	hgsc.bcm.edu;ucsc.edu	37	16	74506300	74506300	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	-	74506300	T	-	74506300	7	5	260	1	0	1	0	1	0	0	0	0	6443	1493	52	0	1609	0	GLG1	16	74506300	Frame_Shift_Del	DEL	T	TCGA-B8-5550-01A-01D-1534-10	7884421	74506300	15848453	75	16501											
HNF1B	6928	hgsc.bcm.edu	37	17	36104840	36104840	+	Silent	SNP	G	G	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	36104840	G	T	36104840	2	4	260	1	0	0	0	0	0	0	0	1	7259	1161	41	4		4	HNF1B	17	36104840	Silent	SNP	G	TCGA-B8-5550-01A-01D-1534-10		36104840	45090370	76	16502											
GPR179	440435	hgsc.bcm.edu;ucsc.edu	37	17	36495345	36495345	+	Silent	SNP	T	T	G	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	36495345	T	G	36495345	2	3	260	1	0	0	0	0	0	0	0	1	6681	1567	55	5		5	GPR179	17	36495345	Silent	SNP	T	TCGA-B8-5550-01A-01D-1534-10	390505	36495345	44699865	77	16503											
GNA13	10672	hgsc.bcm.edu;ucsc.edu	37	17	63010742	63010742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	63010742	A	T	63010742	3	4	260	1	0	0	0	0	1	0	0	0	6508	72	3	5	370	5	GNA13	17	63010742	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	26515397	63010742	18184468	78	16504											
PRPSAP1	5635	hgsc.bcm.edu;ucsc.edu	37	17	74308958	74308958	+	Missense_Mutation	SNP	A	A	G	rs141217356		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	74308958	A	G	74308958	3	3	260	1	0	0	0	0	1	0	0	0	12591	391	14	3	173	3	PRPSAP1	17	74308958	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	11298216	74308958	6886252	79	16505											
ZNF519	162655	hgsc.bcm.edu	37	18	14105247	14105247	+	Missense_Mutation	SNP	T	T	G	rs145735313	byfrequency	TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	G	14105247	T	G	14105247	3	3	260	1	0	0	0	0	1	0	0	0	17976	1696	59	5	334	5	ZNF519	18	14105247	Missense_Mutation	SNP	T	TCGA-B8-5550-01A-01D-1534-10		14105247	63972001	80	16506	217	2									
ZNF519	162655	hgsc.bcm.edu	37	18	14105249	14105249	+	Silent	SNP	T	T	C	rs144389001	byfrequency	TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	C	14105249	T	C	14105249	2	2	260	1	0	0	0	0	0	0	0	1	17976	1722	60	3		3	ZNF519	18	14105249	Silent	SNP	T	TCGA-B8-5550-01A-01D-1534-10	2	14105249	63971999	81	16507	217	2									
FAM59A	0	hgsc.bcm.edu;ucsc.edu	37	18	29867671	29867671	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	29867671	A	T	29867671	3	4	260	1	0	0	0	0	1	0	0	0	5599	72	3	5	1750	5	FAM59A	18	29867671	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	15762422	29867671	48209577	82	16508											
COL5A3	50509	hgsc.bcm.edu;ucsc.edu	37	19	10080071	10080072	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	GT	10080072	-	GT	10080071	7	5	260	1	0	1	1	0	0	0	0	0	3700	1348	47	0	1175	0	COL5A3	19	10080071	Frame_Shift_Ins	INS	-	TCGA-B8-5550-01A-01D-1534-10		10080071	49048912	83	16509											
NOTCH3	4854	hgsc.bcm.edu	37	19	15289963	15289963	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	15289963	G	T	15289963	4	4	260	1	0	0	0	0	0	1	0	0	10557	1372	48	4	3422	4	NOTCH3	19	15289963	Nonsense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	5209892	15289963	43839020	84	16510											
PLD3	23646	hgsc.bcm.edu;ucsc.edu	37	19	40876046	40876046	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	40876046	A	T	40876046	4	4	260	1	0	0	0	0	0	1	0	0	12054	247	9	5	602	5	PLD3	19	40876046	Nonsense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10	25586083	40876046	18252937	85	16511											
COX6B2	125965	hgsc.bcm.edu;ucsc.edu	37	19	55865854	55865854	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	-	55865854	C	-	55865854	7	5	260	1	0	1	0	1	0	0	0	0	3779	842	30	0	242	0	COX6B2	19	55865854	Frame_Shift_Del	DEL	C	TCGA-B8-5550-01A-01D-1534-10	14989808	55865854	3263129	86	16512											
C20orf26	26074	hgsc.bcm.edu;ucsc.edu	37	20	20243667	20243667	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	20243667	A	T	20243667	3	4	260	1	0	0	0	0	1	0	0	0	2108	188	7	5	2506	5	C20orf26	20	20243667	Missense_Mutation	SNP	A	TCGA-B8-5550-01A-01D-1534-10		20243667	42781853	87	16513											
HCK	3055	hgsc.bcm.edu;ucsc.edu	37	20	30676371	30676371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	A	30676371	G	A	30676371	3	1	260	1	0	0	0	0	1	0	0	0	7001	1188	41	2	1060	2	HCK	20	30676371	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	10432704	30676371	32349149	88	16514											
FAM48B1	0	hgsc.bcm.edu	37	X	24382644	24382644	+	Silent	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	24382644	C	T	24382644	2	4	260	1	0	0	0	0	0	0	0	1	5580	581	21	2		2	FAM48B1	23	24382644	Silent	SNP	C	TCGA-B8-5550-01A-01D-1534-10		24382644	130887916	89	16515											
BCOR	54880	hgsc.bcm.edu;ucsc.edu	37	X	39931683	39931683	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	39931683	G	T	39931683	4	4	260	1	0	0	0	0	0	1	0	0	1386	1140	40	4	2399	4	BCOR	23	39931683	Nonsense_Mutation	SNP	G	TCGA-B8-5550-01A-01D-1534-10	15549039	39931683	115338877	90	16516											
CASK	8573	hgsc.bcm.edu;ucsc.edu	37	X	41428920	41428920	+	Splice_Site	SNP	C	C	T	novel		TCGA-B8-5550-01A-01D-1534-10	TCGA-B8-5550-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0a604587-2575-4a52-95a7-ca5c5971045d	d86d79bb-fbb2-46a6-9f40-32f2b17dc4b9	T	41428920	C	T	41428920	5	4	260	1	0	0	0	0	0	0	1	0	2667	521	18	2	1245	2	CASK	23	41428920	Splice_Site	SNP	C	TCGA-B8-5550-01A-01D-1534-10	1497237	41428920	113841640	91	16517											
VHL	7428	hgsc.bcm.edu	37	3	10183767	10183767	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5550-01A-01W-1584-10	TCGA-B8-5550-10A-01W-1585-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq	.	.	PacBio RS	f8dca1fa-9afd-4eb6-b608-ac8a63ced992	a7a3d0df-1143-4b79-89b7-e2cddcd25fa9	C	10183767	G	C	10183767	3	2	261	1	0	0	0	0	1	0	0	0	17174	1087	38	4	238	4	VHL	3	10183767	Missense_Mutation	SNP	G	TCGA-B8-5550-01A-01W-1584-10		10183767	187838663	1	16518											
TMEM17	200728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	62728554	62728554	+	Silent	SNP	G	G	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	62728554	G	T	62728554	2	4	262	1	0	0	0	0	0	0	0	1	16097	929	33	4		4	TMEM17	2	62728554	Silent	SNP	G	TCGA-B8-5551-01A-01D-1534-10		62728554	180470819	1	16519											
TTN	7273	hgsc.bcm.edu	37	2	179611843	179611875	+	In_Frame_Del	DEL	TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA	TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA	-	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA	TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	-	179611875	TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA	-	179611843	7	5	262	1	0	1	0	1	0	0	0	0	16747	1638	57	0	95013	0	TTN	2	179611843	In_Frame_Del	DEL	TATCTCTCCAGAGTCTCTCCTGGGGGTGTGGAA	TCGA-B8-5551-01A-01D-1534-10	116883289	179611843	63587530	2	16520											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188254	10188254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	C	10188254	A	C	10188254	3	2	262	1	0	0	0	0	1	0	0	0	17174	43	2	5	403	5	VHL	3	10188254	Missense_Mutation	SNP	A	TCGA-B8-5551-01A-01D-1534-10		10188254	187834176	3	16521											
NR1D2	9975	hgsc.bcm.edu;ucsc.edu	37	3	24018838	24018838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	-	24018838	A	-	24018838	7	5	262	1	0	1	0	1	0	0	0	0	10623	349	13	0	1698	0	NR1D2	3	24018838	Frame_Shift_Del	DEL	A	TCGA-B8-5551-01A-01D-1534-10	13830584	24018838	174003592	4	16522											
HHATL	57467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	42734320	42734320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	42734320	C	T	42734320	3	4	262	1	0	0	0	0	1	0	0	0	7097	536	19	1	80	1	HHATL	3	42734320	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10	18715482	42734320	155288110	5	16523											
BAP1	8314	broad.mit.edu;ucsc.edu	37	3	52443729	52443729	+	Splice_Site	SNP	C	T	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	52443729	T	T	52443729	5	4	262	1	0	0	0	0	0	0	1	0	1311	521	18	2	2185	2	BAP1	3	52443729	Splice_Site	SNP	C	TCGA-B8-5551-01A-01D-1534-10	9709409	52443729	145578701	6	16524											
SLC12A8	84561	broad.mit.edu	37	3	124906161	124906161	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	124906161	T	T	124906161	3	4	262	1	0	0	0	0	1	0	0	0	14402	652	23	1	1878	1	SLC12A8	3	124906161	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10	72462432	124906161	73116269	7	16525											
PLCH1	23007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	155215167	155215167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	G	155215167	T	G	155215167	3	3	262	1	0	0	0	0	1	0	0	0	12044	1722	60	5	3336	5	PLCH1	3	155215167	Missense_Mutation	SNP	T	TCGA-B8-5551-01A-01D-1534-10	30309006	155215167	42807263	8	16526											
EIF2B5	8893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	183859715	183859715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	183859715	G	A	183859715	3	1	262	1	0	0	0	0	1	0	0	0	5006	1290	45	2	1189	2	EIF2B5	3	183859715	Missense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10	28644548	183859715	14162715	9	16527											
MUC4	4585	broad.mit.edu	37	3	195511310	195511310	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	C	195511310	C	C	195511310	3	2	262	1	0	0	0	0	1	0	0	0	9985	1290	45	4		4	MUC4	3	195511310	Missense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10	11651595	195511310	2511120	10	16528											
MFSD7	84179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	680061	680061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	680061	C	T	680061	3	4	262	1	0	0	0	0	1	0	0	0	9544	652	23	1	1386	1	MFSD7	4	680061	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10		680061	190474215	11	16529											
FAT4	79633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	126242662	126242662	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	126242662	A	T	126242662	3	4	262	1	0	0	0	0	1	0	0	0	5699	304	11	5	5098	5	FAT4	4	126242662	Missense_Mutation	SNP	A	TCGA-B8-5551-01A-01D-1534-10	125562601	126242662	64911614	12	16530											
PCDHB1	29930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140432180	140432180	+	Silent	SNP	C	C	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	140432180	C	T	140432180	2	4	262	1	0	0	0	0	0	0	0	1	11541	477	17	2		2	PCDHB1	5	140432180	Silent	SNP	C	TCGA-B8-5551-01A-01D-1534-10		140432180	40483080	13	16531											
CAMK2A	815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149619293	149619293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	G	149619293	T	G	149619293	3	3	262	1	0	0	0	0	1	0	0	0	2601	1850	64	5	502	5	CAMK2A	5	149619293	Missense_Mutation	SNP	T	TCGA-B8-5551-01A-01D-1534-10	9187113	149619293	31295967	14	16532											
RBM24	221662	hgsc.bcm.edu	37	6	17292140	17292140	+	Silent	SNP	C	C	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	17292140	C	T	17292140	2	4	262	1	0	0	0	0	0	0	0	1	13137	639	23	1		1	RBM24	6	17292140	Silent	SNP	C	TCGA-B8-5551-01A-01D-1534-10		17292140	153822927	15	16533											
TNRC18	84629	broad.mit.edu;hgsc.bcm.edu	37	7	5348898	5348898	+	Silent	SNP	G	G	A	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	5348898	G	A	5348898	2	1	262	1	0	0	0	0	0	0	0	1	16351	1103	39	1		1	TNRC18	7	5348898	Silent	SNP	G	TCGA-B8-5551-01A-01D-1534-10		5348898	153789765	16	16534											
DUSP26	78986	broad.mit.edu;ucsc.edu	37	8	33451243	33451243	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	33451243	T	T	33451243	3	4	262	1	0	0	0	0	1	0	0	0	4825	864	30	2	399	2	DUSP26	8	33451243	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10		33451243	112912779	17	16535											
ZFHX4	79776	broad.mit.edu	37	8	77768349	77768349	+	Silent	SNP	T	C	C	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	C	77768349	C	C	77768349	2	2	262	1	0	0	0	0	0	0	0	1	17647	1799	63	3		3	ZFHX4	8	77768349	Silent	SNP	T	TCGA-B8-5551-01A-01D-1534-10	44317106	77768349	68595673	18	16536											
ZNF33B	7582	broad.mit.edu;hgsc.bcm.edu	37	10	43088522	43088522	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	43088522	G	A	43088522	4	1	262	1	0	0	0	0	0	1	0	0	17867	1299	45	2	464	2	ZNF33B	10	43088522	Nonsense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10		43088522	92446225	19	16537											
CYP2C19	1557	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96534859	96534859	+	Silent	SNP	G	G	A	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	96534859	G	A	96534859	2	1	262	1	0	0	0	0	0	0	0	1	4168	1335	47	2		2	CYP2C19	10	96534859	Silent	SNP	G	TCGA-B8-5551-01A-01D-1534-10	53446337	96534859	38999888	20	16538											
OR4C15	81309	hgsc.bcm.edu	37	11	55322635	55322635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	C	55322635	G	C	55322635	3	2	262	1	0	0	0	0	1	0	0	0	11055	1000	35	4	855	4	OR4C15	11	55322635	Missense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10		55322635	79683881	21	16539											
KRTAP5-11	440051	hgsc.bcm.edu	37	11	71293818	71293818	+	Silent	SNP	C	C	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	71293818	C	T	71293818	2	4	262	1	0	0	0	0	0	0	0	1	8567	610	22	2		2	KRTAP5-11	11	71293818	Silent	SNP	C	TCGA-B8-5551-01A-01D-1534-10	15971183	71293818	63712698	22	16540											
USP28	57646	hgsc.bcm.edu;ucsc.edu	37	11	113694390	113694391	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	-	113694391	TT	-	113694390	7	5	262	1	0	1	0	1	0	0	0	0	17070	1493	52	0	2069	0	USP28	11	113694390	Frame_Shift_Del	DEL	TT	TCGA-B8-5551-01A-01D-1534-10	42400572	113694390	21312126	23	16541											
CCND2	894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	4398012	4398012	+	Silent	SNP	T	T	C	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	C	4398012	T	C	4398012	2	2	262	1	0	0	0	0	0	0	0	1	2919	1751	61	3		3	CCND2	12	4398012	Silent	SNP	T	TCGA-B8-5551-01A-01D-1534-10		4398012	129453883	24	16542											
CAPZA3	93661	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	18891595	18891595	+	Silent	SNP	C	C	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	18891595	C	T	18891595	2	4	262	1	0	0	0	0	0	0	0	1	2644	506	18	2		2	CAPZA3	12	18891595	Silent	SNP	C	TCGA-B8-5551-01A-01D-1534-10	14493583	18891595	114960300	25	16543											
COQ10A	93058	hgsc.bcm.edu;ucsc.edu	37	12	56662982	56662982	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	-	56662982	G	-	56662982	7	5	262	1	0	1	0	1	0	0	0	0	3745	1377	48	0	473	0	COQ10A	12	56662982	Frame_Shift_Del	DEL	G	TCGA-B8-5551-01A-01D-1534-10	37771387	56662982	77188913	26	16544											
IL22	50616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	68646407	68646407	+	Silent	SNP	C	C	A	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	68646407	C	A	68646407	2	1	262	1	0	0	0	0	0	0	0	1	7679	813	29	4		4	IL22	12	68646407	Silent	SNP	C	TCGA-B8-5551-01A-01D-1534-10	11983425	68646407	65205488	27	16545											
LTA4H	4048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	96397644	96397644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	96397644	C	T	96397644	3	4	262	1	0	0	0	0	1	0	0	0	9076	710	25	2	262	2	LTA4H	12	96397644	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10	27751237	96397644	37454251	28	16546											
HIP1R	9026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123340840	123340840	+	Silent	SNP	G	G	C	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	C	123340840	G	C	123340840	2	2	262	1	0	0	0	0	0	0	0	1	7122	1277	45	4		4	HIP1R	12	123340840	Silent	SNP	G	TCGA-B8-5551-01A-01D-1534-10	26943196	123340840	10511055	29	16547	218	2									
HIP1R	9026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123340841	123340841	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	123340841	A	T	123340841	4	4	262	1	0	0	0	0	0	1	0	0	7122	247	9	5	1409	5	HIP1R	12	123340841	Nonsense_Mutation	SNP	A	TCGA-B8-5551-01A-01D-1534-10	1	123340841	10511054	30	16548	218	2									
ZNF280D	54816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	56959007	56959007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	56959007	G	A	56959007	3	1	262	1	0	0	0	0	1	0	0	0	17829	1261	44	2	1248	2	ZNF280D	15	56959007	Missense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10		56959007	45572385	31	16549											
CCDC33	80125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	74565206	74565206	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	G	74565206	C	G	74565206	3	3	262	1	0	0	0	0	1	0	0	0	2808	884	31	4	759	4	CCDC33	15	74565206	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10	17606199	74565206	27966186	32	16550											
ABCC6	368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	16256866	16256866	+	Nonsense_Mutation	SNP	G	G	A	rs72653744	bycluster	TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	16256866	G	A	16256866	4	1	262	1	0	0	0	0	0	1	0	0	57	1095	38	1	1053	1	ABCC6	16	16256866	Nonsense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10		16256866	74097887	33	16551											
MBTPS1	8720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	84101412	84101412	+	Silent	SNP	C	C	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	84101412	C	T	84101412	2	4	262	1	0	0	0	0	0	0	0	1	9368	581	21	2		2	MBTPS1	16	84101412	Silent	SNP	C	TCGA-B8-5551-01A-01D-1534-10	67844546	84101412	6253341	34	16552											
SERPINF2	5345	broad.mit.edu;ucsc.edu	37	17	1650770	1650770	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	G	1650770	G	G	1650770	3	3	262	1	0	0	0	0	1	0	0	0	14128	159	6	3	711	3	SERPINF2	17	1650770	Missense_Mutation	SNP	A	TCGA-B8-5551-01A-01D-1534-10		1650770	79544440	35	16553											
KIAA0100	9703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26969021	26969021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	C	26969021	T	C	26969021	3	2	262	1	0	0	0	0	1	0	0	0	8161	1696	59	3	6187	3	KIAA0100	17	26969021	Missense_Mutation	SNP	T	TCGA-B8-5551-01A-01D-1534-10	25318251	26969021	54226189	36	16554											
MYO18A	399687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27409435	27409435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	27409435	G	T	27409435	3	4	262	1	0	0	0	0	1	0	0	0	10072	1020	36	4	253	4	MYO18A	17	27409435	Missense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10	440414	27409435	53785775	37	16555											
UNC45B	146862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33513509	33513509	+	Silent	SNP	A	A	G	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	G	33513509	A	G	33513509	2	3	262	1	0	0	0	0	0	0	0	1	17001	69	3	3		3	UNC45B	17	33513509	Silent	SNP	A	TCGA-B8-5551-01A-01D-1534-10	6104074	33513509	47681701	38	16556											
KAT2A	2648	hgsc.bcm.edu	37	17	40270030	40270068	+	Frame_Shift_Del	DEL	CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG	CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG	-	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG	CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	-	40270068	CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG	-	40270030	7	5	262	1	0	1	0	1	0	0	0	0	7988	565	20	0	1371	0	KAT2A	17	40270030	Frame_Shift_Del	DEL	CTGAAGCTGAGGAGAGAGAGAGACGTCAGGGATGGGGGG	TCGA-B8-5551-01A-01D-1534-10	6756521	40270030	40925180	39	16557											
GPATCH8	23131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42476348	42476348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	G	42476348	A	G	42476348	3	3	262	1	0	0	0	0	1	0	0	0	6601	304	11	3	1415	3	GPATCH8	17	42476348	Missense_Mutation	SNP	A	TCGA-B8-5551-01A-01D-1534-10	2206318	42476348	38718862	40	16558											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	6983124	6983124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	6983124	G	T	6983124	3	4	262	1	0	0	0	0	1	0	0	0	8612	1290	45	4	3553	4	LAMA1	18	6983124	Missense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10		6983124	71094124	41	16559											
OR10H1	26539	broad.mit.edu;hgsc.bcm.edu	37	19	15918103	15918103	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	G	15918103	C	G	15918103	3	3	262	1	0	0	0	0	1	0	0	0	10912	507	18	4	215	4	OR10H1	19	15918103	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10		15918103	43210880	42	16560											
ZNF790	388536	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37314189	37314189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	37314189	G	T	37314189	3	4	262	1	0	0	0	0	1	0	0	0	18174	1348	47	4	1691	4	ZNF790	19	37314189	Missense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10	21396086	37314189	21814794	43	16561											
LMTK3	114783	broad.mit.edu	37	19	48994751	48994751	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	-	48994751	-	-	48994751	7	5	262	1	0	1	0	1	0	0	0	0	8867	855	30	0	256	0	LMTK3	19	48994751	Frame_Shift_Del	DEL	C	TCGA-B8-5551-01A-01D-1534-10	11680562	48994751	10134232	44	16562											
CLDND2	125875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51870775	51870775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	C	51870775	G	C	51870775	3	2	262	1	0	0	0	0	1	0	0	0	3496	1368	48	4	145	4	CLDND2	19	51870775	Missense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10	2876024	51870775	7258208	45	16563											
RPL28	6158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55899365	55899365	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	G	55899365	C	G	55899365	3	3	262	1	0	0	0	0	1	0	0	0	13590	709	25	4	351	4	RPL28	19	55899365	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10	4028590	55899365	3229618	46	16564											
PLCB4	5332	broad.mit.edu;hgsc.bcm.edu	37	20	9318701	9318701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	9318701	G	T	9318701	3	4	262	1	0	0	0	0	1	0	0	0	12037	1174	41	4	222	4	PLCB4	20	9318701	Missense_Mutation	SNP	G	TCGA-B8-5551-01A-01D-1534-10		9318701	53706819	47	16565											
C20orf103	0	broad.mit.edu;hgsc.bcm.edu	37	20	9495509	9495509	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	T	9495509	C	T	9495509	4	4	262	1	0	0	0	0	0	1	0	0	2077	595	21	2	12	2	C20orf103	20	9495509	Nonsense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10	176808	9495509	53530011	48	16566											
VCX3B	425054	hgsc.bcm.edu	37	X	8434287	8434316	+	In_Frame_Del	DEL	GAACCACTGAGTCAGGAGAGCGAGATGGAA	GAACCACTGAGTCAGGAGAGCGAGATGGAA	-	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	GAACCACTGAGTCAGGAGAGCGAGATGGAA	GAACCACTGAGTCAGGAGAGCGAGATGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	-	8434316	GAACCACTGAGTCAGGAGAGCGAGATGGAA	-	8434287	7	5	262	1	0	1	0	1	0	0	0	0	17157	1175	41	0	524	0	VCX3B	23	8434287	In_Frame_Del	DEL	GAACCACTGAGTCAGGAGAGCGAGATGGAA	TCGA-B8-5551-01A-01D-1534-10		8434287	146836273	49	16567											
ALG13	79868	broad.mit.edu;hgsc.bcm.edu	37	X	110987973	110987973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	110987973	C	A	110987973	3	1	262	1	0	0	0	0	1	0	0	0	515	507	18	4	3009	4	ALG13	23	110987973	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10	102553686	110987973	44282587	50	16568											
NKRF	55922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	118724876	118724876	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	118724876	T	A	118724876	3	1	262	1	0	0	0	0	1	0	0	0	10454	1580	55	5	1564	5	NKRF	23	118724876	Missense_Mutation	SNP	T	TCGA-B8-5551-01A-01D-1534-10	7736903	118724876	36545684	51	16569											
L1CAM	3897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153129373	153129373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5551-01A-01D-1534-10	TCGA-B8-5551-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bc35fa0-0102-4ecb-92eb-9ebc4d1c3ec4	bd598451-8008-4df9-8668-7de1749665a5	A	153129373	C	A	153129373	3	1	262	1	0	0	0	0	1	0	0	0	8595	710	25	4	367	4	L1CAM	23	153129373	Missense_Mutation	SNP	C	TCGA-B8-5551-01A-01D-1534-10	34404497	153129373	2141187	52	16570											
LCLAT1	253558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	30756119	30756119	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	30756119	T	A	30756119	4	1	263	1	0	0	0	0	0	1	0	0	8684	1413	49	5	427	5	LCLAT1	2	30756119	Nonsense_Mutation	SNP	T	TCGA-B8-5552-01B-11D-1669-08		30756119	212443254	1	16571											
CCDC75	253635	broad.mit.edu;ucsc.edu	37	2	37315582	37315582	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	37315582	T	T	37315582	4	4	263	1	0	0	0	0	0	1	0	0	2851	608	21	2	48	2	CCDC75	2	37315582	Nonsense_Mutation	SNP	C	TCGA-B8-5552-01B-11D-1669-08	6559463	37315582	205883791	2	16572											
APLF	200558	hgsc.bcm.edu	37	2	68805143	68805143	+	Frame_Shift_Del	DEL	A	A	-	rs149897324	by1000genomes	TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	-	68805143	A	-	68805143	7	5	263	1	0	1	0	1	0	0	0	0	776	247	9	0	1563	0	APLF	2	68805143	Frame_Shift_Del	DEL	A	TCGA-B8-5552-01B-11D-1669-08	31489561	68805143	174394230	3	16573											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179614716	179614716	+	Silent	SNP	A	A	G	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	G	179614716	A	G	179614716	2	3	263	1	0	0	0	0	0	0	0	1	16747	330	12	3		3	TTN	2	179614716	Silent	SNP	A	TCGA-B8-5552-01B-11D-1669-08	110809573	179614716	63584657	4	16574											
XPC	7508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	14214467	14214467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	14214467	C	A	14214467	3	1	263	1	0	0	0	0	1	0	0	0	17453	797	28	4	1632	4	XPC	3	14214467	Missense_Mutation	SNP	C	TCGA-B8-5552-01B-11D-1669-08		14214467	183807963	5	16575											
RFTN1	23180	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	16475443	16475443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	16475443	G	A	16475443	3	1	263	1	0	0	0	0	1	0	0	0	13271	1319	46	2	1521	2	RFTN1	3	16475443	Missense_Mutation	SNP	G	TCGA-B8-5552-01B-11D-1669-08	2260976	16475443	181546987	6	16576											
DZIP1L	199221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	137813726	137813726	+	Missense_Mutation	SNP	G	G	A	rs148594666	bycluster;byfrequency;by1000genomes	TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	137813726	G	A	137813726	3	1	263	1	0	0	0	0	1	0	0	0	4866	1087	38	1	1678	1	DZIP1L	3	137813726	Missense_Mutation	SNP	G	TCGA-B8-5552-01B-11D-1669-08	121338283	137813726	60208704	7	16577											
COPB2	9276	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	139077639	139077639	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	G	139077639	T	G	139077639	3	3	263	1	0	0	0	0	1	0	0	0	3731	1841	64	5	232	5	COPB2	3	139077639	Missense_Mutation	SNP	T	TCGA-B8-5552-01B-11D-1669-08	1263913	139077639	58944791	8	16578											
C4orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	184601356	184601356	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	184601356	A	T	184601356	3	4	263	1	0	0	0	0	1	0	0	0	2272	391	14	5	1083	5	C4orf41	4	184601356	Missense_Mutation	SNP	A	TCGA-B8-5552-01B-11D-1669-08		184601356	6552920	9	16579											
ADAMTS12	81792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33576384	33576384	+	Silent	SNP	G	G	A	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	33576384	G	A	33576384	2	1	263	1	0	0	0	0	0	0	0	1	257	1161	41	2		2	ADAMTS12	5	33576384	Silent	SNP	G	TCGA-B8-5552-01B-11D-1669-08		33576384	147338876	10	16580											
NSD1	64324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176562399	176562399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	176562399	G	A	176562399	3	1	263	1	0	0	0	0	1	0	0	0	10676	942	33	2	297	2	NSD1	5	176562399	Missense_Mutation	SNP	G	TCGA-B8-5552-01B-11D-1669-08	142986015	176562399	4352861	11	16581											
HSPA1L	3305	broad.mit.edu;hgsc.bcm.edu	37	6	31779631	31779631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	31779631	G	A	31779631	3	1	263	1	0	0	0	0	1	0	0	0	7417	1261	44	2	1810	2	HSPA1L	6	31779631	Missense_Mutation	SNP	G	TCGA-B8-5552-01B-11D-1669-08		31779631	139335436	12	16582											
DLD	1738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107542792	107542792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	G	107542792	A	G	107542792	3	3	263	1	0	0	0	0	1	0	0	0	4553	246	9	3	235	3	DLD	7	107542792	Missense_Mutation	SNP	A	TCGA-B8-5552-01B-11D-1669-08		107542792	51595871	13	16583											
DIP2C	22982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	329235	329235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	329235	G	T	329235	3	4	263	1	0	0	0	0	1	0	0	0	4531	1029	36	4	411	4	DIP2C	10	329235	Missense_Mutation	SNP	G	TCGA-B8-5552-01B-11D-1669-08		329235	135205512	14	16584											
INPP5F	22876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	121567483	121567483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	121567483	C	T	121567483	3	4	263	1	0	0	0	0	1	0	0	0	7765	507	18	2	1530	2	INPP5F	10	121567483	Missense_Mutation	SNP	C	TCGA-B8-5552-01B-11D-1669-08	121238248	121567483	13967264	15	16585											
PGAP2	27315	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	3846652	3846652	+	Silent	SNP	G	G	A	rs151115501	byfrequency;alternate_allele	TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	3846652	G	A	3846652	2	1	263	1	0	0	0	0	0	0	0	1	11785	1306	46	2		2	PGAP2	11	3846652	Silent	SNP	G	TCGA-B8-5552-01B-11D-1669-08		3846652	131159864	16	16586											
HIPK3	10114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	33308096	33308096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	C	33308096	A	C	33308096	3	2	263	1	0	0	0	0	1	0	0	0	7125	246	9	5	138	5	HIPK3	11	33308096	Missense_Mutation	SNP	A	TCGA-B8-5552-01B-11D-1669-08	29461444	33308096	101698420	17	16587											
SIK2	23235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111591208	111591208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	111591208	T	A	111591208	3	1	263	1	0	0	0	0	1	0	0	0	14331	1493	52	5	1544	5	SIK2	11	111591208	Missense_Mutation	SNP	T	TCGA-B8-5552-01B-11D-1669-08	78283112	111591208	23415308	18	16588											
BIN2	51411	broad.mit.edu;hgsc.bcm.edu	37	12	51685607	51685607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	51685607	G	T	51685607	3	4	263	1	0	0	0	0	1	0	0	0	1433	1232	43	4	430	4	BIN2	12	51685607	Missense_Mutation	SNP	G	TCGA-B8-5552-01B-11D-1669-08		51685607	82166288	19	16589											
SKA3	221150	hgsc.bcm.edu	37	13	21746601	21746601	+	Frame_Shift_Del	DEL	G	G	-	rs151272242	by1000genomes	TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	-	21746601	G	-	21746601	7	5	263	1	0	1	0	1	0	0	0	0	14367	1299	45	0	1105	0	SKA3	13	21746601	Frame_Shift_Del	DEL	G	TCGA-B8-5552-01B-11D-1669-08		21746601	93423277	20	16590											
NEK9	91754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75583974	75583974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	C	75583974	T	C	75583974	3	2	263	1	0	0	0	0	1	0	0	0	10338	1493	52	3	2321	3	NEK9	14	75583974	Missense_Mutation	SNP	T	TCGA-B8-5552-01B-11D-1669-08		75583974	31765566	21	16591											
HSP90AA1	3320	broad.mit.edu;hgsc.bcm.edu	37	14	102548486	102548486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	C	102548486	T	C	102548486	3	2	263	1	0	0	0	0	1	0	0	0	7408	1464	51	3	155	3	HSP90AA1	14	102548486	Missense_Mutation	SNP	T	TCGA-B8-5552-01B-11D-1669-08	26964512	102548486	4801054	22	16592											
CHRNB4	1143	hgsc.bcm.edu;ucsc.edu	37	15	78917593	78917593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	78917593	C	T	78917593	3	4	263	1	0	0	0	0	1	0	0	0	3395	652	23	1	121	1	CHRNB4	15	78917593	Missense_Mutation	SNP	C	TCGA-B8-5552-01B-11D-1669-08		78917593	23613799	23	16593											
CHRNB4	1143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	78921969	78921969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	78921969	G	T	78921969	3	4	263	1	0	0	0	0	1	0	0	0	3395	1281	45	4	826	4	CHRNB4	15	78921969	Missense_Mutation	SNP	G	TCGA-B8-5552-01B-11D-1669-08	4376	78921969	23609423	24	16594											
RHBDF1	64285	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	109479	109479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	G	109479	A	G	109479	3	3	263	1	0	0	0	0	1	0	0	0	13332	304	11	3	752	3	RHBDF1	16	109479	Missense_Mutation	SNP	A	TCGA-B8-5552-01B-11D-1669-08		109479	90245274	25	16595											
MAF	4094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	79632954	79632954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	79632954	G	T	79632954	3	4	263	1	0	0	0	0	1	0	0	0	9162	1310	46	4	377	4	MAF	16	79632954	Missense_Mutation	SNP	G	TCGA-B8-5552-01B-11D-1669-08	79523475	79632954	10721799	26	16596											
MBP	4155	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	74778271	74778271	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	74778271	T	A	74778271	3	1	263	1	0	0	0	0	1	0	0	0	9366	1551	54	5	920	5	MBP	18	74778271	Missense_Mutation	SNP	T	TCGA-B8-5552-01B-11D-1669-08		74778271	3298977	27	16597											
DUSP15	128853	broad.mit.edu	37	20	30438442	30438442	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	C	30438442	C	C	30438442	3	2	263	1	0	0	0	0	1	0	0	0	4817	1827	63	3		3	DUSP15	20	30438442	Missense_Mutation	SNP	T	TCGA-B8-5552-01B-11D-1669-08		30438442	32587078	28	16598											
PTGIS	5740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	48130813	48130813	+	Silent	SNP	C	C	T	rs140787750	by1000genomes	TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	48130813	C	T	48130813	2	4	263	1	0	0	0	0	0	0	0	1	12763	755	27	1		1	PTGIS	20	48130813	Silent	SNP	C	TCGA-B8-5552-01B-11D-1669-08	17692371	48130813	14894707	29	16599											
COL18A1	80781	hgsc.bcm.edu	37	21	46925141	46925149	+	In_Frame_Del	DEL	GGCCCCCCA	GGCCCCCCA	-	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	GGCCCCCCA	GGCCCCCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	-	46925149	GGCCCCCCA	-	46925141	7	5	263	1	0	1	0	1	0	0	0	0	3677	1116	39	0	4450	0	COL18A1	21	46925141	In_Frame_Del	DEL	GGCCCCCCA	TCGA-B8-5552-01B-11D-1669-08		46925141	1204754	30	16600											
KIAA2022	340533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	73960856	73960856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	A	73960856	C	A	73960856	3	1	263	1	0	0	0	0	1	0	0	0	8276	565	20	4	1022	4	KIAA2022	23	73960856	Missense_Mutation	SNP	C	TCGA-B8-5552-01B-11D-1669-08		73960856	81309704	31	16601											
POU3F4	5456	hgsc.bcm.edu	37	X	82764039	82764039	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	-	82764039	A	-	82764039	7	5	263	1	0	1	0	1	0	0	0	0	12284	246	9	0	709	0	POU3F4	23	82764039	Frame_Shift_Del	DEL	A	TCGA-B8-5552-01B-11D-1669-08	8803183	82764039	72506521	32	16602											
TBC1D8B	54885	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	106117008	106117008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5552-01B-11D-1669-08	TCGA-B8-5552-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13b52e49-20df-4e39-9dc9-cf8f7c157bd7	ee08ef8a-2a71-4a48-b8f3-b363a19db60d	T	106117008	G	T	106117008	3	4	263	1	0	0	0	0	1	0	0	0	15638	1232	43	4	3324	4	TBC1D8B	23	106117008	Missense_Mutation	SNP	G	TCGA-B8-5552-01B-11D-1669-08	23352969	106117008	49153552	33	16603											
COL16A1	1307	hgsc.bcm.edu;ucsc.edu	37	1	32138105	32138105	+	Splice_Site	SNP	T	T	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	32138105	T	A	32138105	5	1	264	1	0	0	0	0	0	0	1	0	3675	1594	55	5	1897	5	COL16A1	1	32138105	Splice_Site	SNP	T	TCGA-B8-5553-01A-01D-1534-10		32138105	217112516	1	16604											
ZSCAN20	7579	hgsc.bcm.edu;ucsc.edu	37	1	33960735	33960736	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	-	33960736	TA	-	33960735	7	5	264	1	0	1	0	1	0	0	0	0	18244	1638	57	0	2817	0	ZSCAN20	1	33960735	Frame_Shift_Del	DEL	TA	TCGA-B8-5553-01A-01D-1534-10	1822630	33960735	215289886	2	16605											
ADORA3	140	hgsc.bcm.edu;ucsc.edu	37	1	112042593	112042593	+	Silent	SNP	G	G	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	112042593	G	A	112042593	2	1	264	1	0	0	0	0	0	0	0	1	329	1310	46	2		2	ADORA3	1	112042593	Silent	SNP	G	TCGA-B8-5553-01A-01D-1534-10	78081858	112042593	137208028	3	16606											
FLG	2312	hgsc.bcm.edu;ucsc.edu	37	1	152287813	152287813	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	152287813	T	A	152287813	3	1	264	1	0	0	0	0	1	0	0	0	5929	1490	52	5	12073	5	FLG	1	152287813	Missense_Mutation	SNP	T	TCGA-B8-5553-01A-01D-1534-10	40245220	152287813	96962808	4	16607											
ADAR	103	hgsc.bcm.edu;ucsc.edu	37	1	154574162	154574162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	154574162	G	T	154574162	3	4	264	1	0	0	0	0	1	0	0	0	281	971	34	4	2780	4	ADAR	1	154574162	Missense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10	2286349	154574162	94676459	5	16608											
TADA1	117143	hgsc.bcm.edu;ucsc.edu	37	1	166826919	166826919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	166826919	G	A	166826919	3	1	264	1	0	0	0	0	1	0	0	0	15521	971	34	2	118	2	TADA1	1	166826919	Missense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10	12252757	166826919	82423702	6	16609											
STRN	6801	hgsc.bcm.edu;ucsc.edu	37	2	37126774	37126774	+	Silent	SNP	G	G	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	37126774	G	A	37126774	2	1	264	1	0	0	0	0	0	0	0	1	15341	1103	39	1		1	STRN	2	37126774	Silent	SNP	G	TCGA-B8-5553-01A-01D-1534-10		37126774	206072599	7	16610											
ATP11B	23200	hgsc.bcm.edu;ucsc.edu	37	3	182616538	182616538	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	182616538	C	G	182616538	3	3	264	1	0	0	0	0	1	0	0	0	1120	681	24	4	3406	4	ATP11B	3	182616538	Missense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10		182616538	15405892	8	16611											
MUC4	4585	hgsc.bcm.edu	37	3	195507852	195507852	+	Silent	SNP	G	G	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	195507852	G	A	195507852	2	1	264	1	0	0	0	0	0	0	0	1	9985	1136	40	1		1	MUC4	3	195507852	Silent	SNP	G	TCGA-B8-5553-01A-01D-1534-10	12891314	195507852	2514578	9	16612											
KLF3	51274	hgsc.bcm.edu;ucsc.edu	37	4	38698823	38698823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	38698823	A	G	38698823	3	3	264	1	0	0	0	0	1	0	0	0	8354	275	10	3	995	3	KLF3	4	38698823	Missense_Mutation	SNP	A	TCGA-B8-5553-01A-01D-1534-10		38698823	152455453	10	16613											
WDR17	116966	hgsc.bcm.edu;ucsc.edu	37	4	177084327	177084327	+	Missense_Mutation	SNP	G	G	A	rs144009080		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	177084327	G	A	177084327	3	1	264	1	0	0	0	0	1	0	0	0	17289	1087	38	1	3031	1	WDR17	4	177084327	Missense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10	138385504	177084327	14069949	11	16614											
VCAN	1462	hgsc.bcm.edu;ucsc.edu	37	5	82789433	82789433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	82789433	T	G	82789433	3	3	264	1	0	0	0	0	1	0	0	0	17150	1812	63	5	524	5	VCAN	5	82789433	Missense_Mutation	SNP	T	TCGA-B8-5553-01A-01D-1534-10		82789433	98125827	12	16615											
PLG	5340	hgsc.bcm.edu;ucsc.edu	37	6	161139413	161139413	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	161139413	C	G	161139413	3	3	264	1	0	0	0	0	1	0	0	0	12093	855	30	4	909	4	PLG	6	161139413	Missense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10		161139413	9975654	13	16616											
TRIM24	8805	hgsc.bcm.edu;ucsc.edu	37	7	138269684	138269684	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	C	138269684	G	C	138269684	3	2	264	1	0	0	0	0	1	0	0	0	16510	1020	36	4	3215	4	TRIM24	7	138269684	Missense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10		138269684	20868979	14	16617											
AGK	55750	hgsc.bcm.edu;ucsc.edu	37	7	141352681	141352681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	141352681	A	G	141352681	3	3	264	1	0	0	0	0	1	0	0	0	383	333	12	3	1284	3	AGK	7	141352681	Missense_Mutation	SNP	A	TCGA-B8-5553-01A-01D-1534-10	3082997	141352681	17785982	15	16618											
PLAG1	5324	hgsc.bcm.edu;ucsc.edu	37	8	57080005	57080005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	57080005	C	T	57080005	3	4	264	1	0	0	0	0	1	0	0	0	12025	478	17	2	1206	2	PLAG1	8	57080005	Missense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10		57080005	89284017	16	16619											
LY96	23643	hgsc.bcm.edu	37	8	74903724	74903724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	74903724	C	G	74903724	3	3	264	1	0	0	0	0	1	0	0	0	9109	565	20	4	49	4	LY96	8	74903724	Missense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10	17823719	74903724	71460298	17	16620											
CPSF1	29894	hgsc.bcm.edu	37	8	145623274	145623274	+	Silent	SNP	C	C	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	145623274	C	A	145623274	2	1	264	1	0	0	0	0	0	0	0	1	3826	581	21	4		4	CPSF1	8	145623274	Silent	SNP	C	TCGA-B8-5553-01A-01D-1534-10	70719550	145623274	740748	18	16621											
TMEM2	23670	hgsc.bcm.edu;ucsc.edu	37	9	74315738	74315738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	C	74315738	T	C	74315738	3	2	264	1	0	0	0	0	1	0	0	0	16133	1493	52	3	978	3	TMEM2	9	74315738	Missense_Mutation	SNP	T	TCGA-B8-5553-01A-01D-1534-10		74315738	66897693	19	16622											
SLC44A1	23446	hgsc.bcm.edu;ucsc.edu	37	9	108128708	108128708	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	108128708	C	T	108128708	4	4	264	1	0	0	0	0	0	1	0	0	14648	827	29	2	1538	2	SLC44A1	9	108128708	Nonsense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10	33812970	108128708	33084723	20	16623											
BICC1	80114	hgsc.bcm.edu;ucsc.edu	37	10	60556181	60556181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	60556181	G	T	60556181	3	4	264	1	0	0	0	0	1	0	0	0	1427	1348	47	4	1299	4	BICC1	10	60556181	Missense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10		60556181	74978566	21	16624											
PANK1	53354	hgsc.bcm.edu;ucsc.edu	37	10	91348527	91348530	+	Frame_Shift_Del	DEL	TCTA	TCTA	-	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	TCTA	TCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	-	91348530	TCTA	-	91348527	7	5	264	1	0	1	0	1	0	0	0	0	11423	1667	58	0	185	0	PANK1	10	91348527	Frame_Shift_Del	DEL	TCTA	TCGA-B8-5553-01A-01D-1534-10	30792346	91348527	44186220	22	16625											
KBTBD4	55709	hgsc.bcm.edu;ucsc.edu	37	11	47599226	47599226	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	47599226	T	G	47599226	3	3	264	1	0	0	0	0	1	0	0	0	8002	1841	64	5	1242	5	KBTBD4	11	47599226	Missense_Mutation	SNP	T	TCGA-B8-5553-01A-01D-1534-10		47599226	87407290	23	16626											
SLC22A6	9356	hgsc.bcm.edu;ucsc.edu	37	11	62751877	62751877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	62751877	C	T	62751877	3	4	264	1	0	0	0	0	1	0	0	0	14471	797	28	2	1445	2	SLC22A6	11	62751877	Missense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10	15152651	62751877	72254639	24	16627											
SLC22A8	9376	hgsc.bcm.edu;ucsc.edu	37	11	62782189	62782189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	C	62782189	T	C	62782189	3	2	264	1	0	0	0	0	1	0	0	0	14473	1493	52	3	1426	3	SLC22A8	11	62782189	Missense_Mutation	SNP	T	TCGA-B8-5553-01A-01D-1534-10	30312	62782189	72224327	25	16628											
UCP2	7351	hgsc.bcm.edu;ucsc.edu	37	11	73686108	73686108	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	73686108	C	A	73686108	4	1	264	1	0	0	0	0	0	1	0	0	16943	835	29	4	59	4	UCP2	11	73686108	Nonsense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10	10903919	73686108	61320408	26	16629											
AMN1	196394	hgsc.bcm.edu;ucsc.edu	37	12	31850698	31850698	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	31850698	C	G	31850698	3	3	264	1	0	0	0	0	1	0	0	0	581	564	20	4	282	4	AMN1	12	31850698	Missense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10		31850698	102001197	27	16630											
DDX55	57696	hgsc.bcm.edu;ucsc.edu	37	12	124104644	124104645	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	-	124104645	AG	-	124104644	7	5	264	1	0	1	0	1	0	0	0	0	4375	72	3	0	1814	0	DDX55	12	124104644	Frame_Shift_Del	DEL	AG	TCGA-B8-5553-01A-01D-1534-10	92253946	124104644	9747251	28	16631											
IPO5	3843	hgsc.bcm.edu;ucsc.edu	37	13	98666445	98666445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	98666445	G	A	98666445	3	1	264	1	0	0	0	0	1	0	0	0	7803	943	33	2	2434	2	IPO5	13	98666445	Missense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10		98666445	16503433	29	16632											
OR4K5	79317	hgsc.bcm.edu;ucsc.edu	37	14	20389123	20389123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	C	20389123	T	C	20389123	3	2	264	1	0	0	0	0	1	0	0	0	11080	1522	53	3	360	3	OR4K5	14	20389123	Missense_Mutation	SNP	T	TCGA-B8-5553-01A-01D-1534-10		20389123	86960417	30	16633											
GABPB1	2553	hgsc.bcm.edu;ucsc.edu	37	15	50596162	50596162	+	Splice_Site	SNP	C	C	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	50596162	C	A	50596162	5	1	264	1	0	0	0	0	0	0	1	0	6165	521	18	4	986	4	GABPB1	15	50596162	Splice_Site	SNP	C	TCGA-B8-5553-01A-01D-1534-10		50596162	51935230	31	16634											
MYO5C	55930	hgsc.bcm.edu;ucsc.edu	37	15	52505431	52505431	+	Silent	SNP	T	T	C	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	C	52505431	T	C	52505431	2	2	264	1	0	0	0	0	0	0	0	1	10087	1490	52	3		3	MYO5C	15	52505431	Silent	SNP	T	TCGA-B8-5553-01A-01D-1534-10	1909269	52505431	50025961	32	16635											
HERC1	8925	hgsc.bcm.edu;ucsc.edu	37	15	63930676	63930676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	63930676	C	G	63930676	3	3	264	1	0	0	0	0	1	0	0	0	7064	796	28	4	2622	4	HERC1	15	63930676	Missense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10	11425245	63930676	38600716	33	16636											
PALB2	79728	hgsc.bcm.edu;ucsc.edu	37	16	23647615	23647615	+	Silent	SNP	G	G	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	23647615	G	T	23647615	2	4	264	1	0	0	0	0	0	0	0	1	11413	1280	45	4		4	PALB2	16	23647615	Silent	SNP	G	TCGA-B8-5553-01A-01D-1534-10		23647615	66707138	34	16637											
FUS	2521	hgsc.bcm.edu;ucsc.edu	37	16	31202109	31202109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	G	31202109	T	G	31202109	3	3	264	1	0	0	0	0	1	0	0	0	6107	1696	59	5	1389	5	FUS	16	31202109	Missense_Mutation	SNP	T	TCGA-B8-5553-01A-01D-1534-10	7554494	31202109	59152644	35	16638	219	4									
FUS	2521	hgsc.bcm.edu;ucsc.edu	37	16	31202110	31202110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	31202110	G	T	31202110	3	4	264	1	0	0	0	0	1	0	0	0	6107	1377	48	4	1390	4	FUS	16	31202110	Missense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10	1	31202110	59152643	36	16639	219	4									
FUS	2521	hgsc.bcm.edu	37	16	31202112	31202112	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	31202112	A	T	31202112	4	4	264	1	0	0	0	0	0	1	0	0	6107	363	13	5	1392	5	FUS	16	31202112	Nonsense_Mutation	SNP	A	TCGA-B8-5553-01A-01D-1534-10	2	31202112	59152641	37	16640	219	4									
FUS	2521	hgsc.bcm.edu;ucsc.edu	37	16	31202116	31202116	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	-	31202116	C	-	31202116	7	5	264	1	0	1	0	1	0	0	0	0	6107	739	26	0	1396	0	FUS	16	31202116	Frame_Shift_Del	DEL	C	TCGA-B8-5553-01A-01D-1534-10	4	31202116	59152637	38	16641	219	4									
RPL27	6155	hgsc.bcm.edu;ucsc.edu	37	17	41154694	41154694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	41154694	T	A	41154694	3	1	264	1	0	0	0	0	1	0	0	0	13588	1551	54	5	266	5	RPL27	17	41154694	Missense_Mutation	SNP	T	TCGA-B8-5553-01A-01D-1534-10		41154694	40040516	39	16642											
CANT1	124583	hgsc.bcm.edu;ucsc.edu	37	17	76991241	76991241	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	76991241	C	A	76991241	4	1	264	1	0	0	0	0	0	1	0	0	2619	864	30	4	519	4	CANT1	17	76991241	Nonsense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10	35836547	76991241	4203969	40	16643											
PIAS2	9063	hgsc.bcm.edu;ucsc.edu	37	18	44424802	44424803	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	-	44424803	TC	-	44424802	7	5	264	1	0	1	0	1	0	0	0	0	11883	1797	62	0	1110	0	PIAS2	18	44424802	Frame_Shift_Del	DEL	TC	TCGA-B8-5553-01A-01D-1534-10		44424802	33652446	41	16644											
PIK3R2	5296	hgsc.bcm.edu;ucsc.edu	37	19	18273796	18273796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	18273796	C	A	18273796	3	1	264	1	0	0	0	0	1	0	0	0	11926	796	28	4	1163	4	PIK3R2	19	18273796	Missense_Mutation	SNP	C	TCGA-B8-5553-01A-01D-1534-10		18273796	40855187	42	16645											
FXYD1	5348	hgsc.bcm.edu;ucsc.edu	37	19	35632104	35632104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	35632104	G	T	35632104	3	4	264	1	0	0	0	0	1	0	0	0	6124	1145	40	4	173	4	FXYD1	19	35632104	Missense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10	17358308	35632104	23496879	43	16646											
ZNF415	55786	hgsc.bcm.edu	37	19	53611977	53611977	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	A	53611977	T	A	53611977	4	1	264	1	0	0	0	0	0	1	0	0	17904	1821	63	5	350	5	ZNF415	19	53611977	Nonsense_Mutation	SNP	T	TCGA-B8-5553-01A-01D-1534-10	17979873	53611977	5517006	44	16647											
MYH7B	57644	hgsc.bcm.edu;ucsc.edu	37	20	33567237	33567237	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	33567237	G	T	33567237	4	4	264	1	0	0	0	0	0	1	0	0	10047	1175	41	4	276	4	MYH7B	20	33567237	Nonsense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10		33567237	29458283	45	16648											
NHS	4810	hgsc.bcm.edu;ucsc.edu	37	X	17745494	17745494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	C	17745494	G	C	17745494	3	2	264	1	0	0	0	0	1	0	0	0	10418	1290	45	4	3332	4	NHS	23	17745494	Missense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10		17745494	137525066	46	16649											
FAM48B1	0	hgsc.bcm.edu	37	X	24381736	24381736	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	24381736	G	T	24381736	4	4	264	1	0	0	0	0	0	1	0	0	5580	1001	35	4	861	4	FAM48B1	23	24381736	Nonsense_Mutation	SNP	G	TCGA-B8-5553-01A-01D-1534-10	6636242	24381736	130888824	47	16650											
BRWD3	254065	hgsc.bcm.edu;ucsc.edu	37	X	79941024	79941024	+	Silent	SNP	C	C	T	novel		TCGA-B8-5553-01A-01D-1534-10	TCGA-B8-5553-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c19e63c-770b-4289-aa47-9b2cf261b4ca	75bb1bff-de4f-4658-a829-26dd76d57e77	T	79941024	C	T	79941024	2	4	264	1	0	0	0	0	0	0	0	1	1528	796	28	2		2	BRWD3	23	79941024	Silent	SNP	C	TCGA-B8-5553-01A-01D-1534-10	55559288	79941024	75329536	48	16651											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11273603	11273603	+	Silent	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	11273603	G	C	11273603	2	2	265	1	0	0	0	0	0	0	0	1	9961	987	35	4		4	MTOR	1	11273603	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08		11273603	237977018	1	16652											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19490300	19490300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	19490300	C	G	19490300	3	3	265	1	0	0	0	0	1	0	0	0	16916	912	32	4	11121	4	UBR4	1	19490300	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	8216697	19490300	229760321	2	16653											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22927186	22927186	+	Silent	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	22927186	A	T	22927186	2	4	265	1	0	0	0	0	0	0	0	1	5175	175	7	5		5	EPHA8	1	22927186	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	3436886	22927186	226323435	3	16654											
ZMYM6	9204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	35457962	35457962	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	-	35457962	T	-	35457962	7	5	265	1	0	1	0	1	0	0	0	0	17716	1490	52	0	1966	0	ZMYM6	1	35457962	Frame_Shift_Del	DEL	T	TCGA-B9-4113-01A-01D-1252-08	12530776	35457962	213792659	4	16655											
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	85487988	85487988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	85487988	C	A	85487988	3	1	265	1	0	0	0	0	1	0	0	0	9404	564	20	4	486	4	MCOLN3	1	85487988	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	50030026	85487988	163762633	5	16656											
GBP1	2633	broad.mit.edu	37	1	89528891	89528891	+	Silent	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	89528891	G	T	89528891	2	4	265	1	0	0	0	0	0	0	0	1	6280	1190	42	4		4	GBP1	1	89528891	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	4040903	89528891	159721730	6	16657											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207105906	207105906	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	207105906	C	A	207105906	4	1	265	1	0	0	0	0	0	1	0	0	11904	603	21	4	407	4	PIGR	1	207105906	Nonsense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	117577015	207105906	42144715	7	16658											
CD46	4179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207940508	207940508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	207940508	C	A	207940508	3	1	265	1	0	0	0	0	1	0	0	0	3020	565	20	4	846	4	CD46	1	207940508	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	834602	207940508	41310113	8	16659											
RBM34	23029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235318245	235318245	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	235318245	T	A	235318245	3	1	265	1	0	0	0	0	1	0	0	0	13144	1493	52	5	797	5	RBM34	1	235318245	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	27377737	235318245	13932376	9	16660											
FMN2	56776	hgsc.bcm.edu	37	1	240371661	240371661	+	Silent	SNP	A	A	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	240371661	A	C	240371661	2	2	265	1	0	0	0	0	0	0	0	1	5957	233	9	5		5	FMN2	1	240371661	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	5053416	240371661	8878960	10	16661											
HADHA	3030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26459821	26459821	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	26459821	G	C	26459821	3	2	265	1	0	0	0	0	1	0	0	0	6950	933	33	4	2143	4	HADHA	2	26459821	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		26459821	216739552	11	16662											
GTF3C2	2976	broad.mit.edu;bcgsc.ca	37	2	27565919	27565920	+	Frame_Shift_Ins	INS	-	-	TGGCCTTT	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	TGGCCTTT	27565920	-	TGGCCTTT	27565919	7	5	265	1	0	1	1	0	0	0	0	0	6880	1357	47	0	2460	0	GTF3C2	2	27565919	Frame_Shift_Ins	INS	-	TCGA-B9-4113-01A-01D-1252-08	1106098	27565919	215633454	12	16663	220	2									
GTF3C2	2976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27565920	27565920	+	Silent	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	27565920	G	T	27565920	2	4	265	1	0	0	0	0	0	0	0	1	6880	1219	43	4		4	GTF3C2	2	27565920	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	1	27565920	215633453	13	16664	220	2									
EML4	27436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	42488420	42488420	+	Silent	SNP	T	T	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	42488420	T	C	42488420	2	2	265	1	0	0	0	0	0	0	0	1	5101	1509	53	3		3	EML4	2	42488420	Silent	SNP	T	TCGA-B9-4113-01A-01D-1252-08	14922500	42488420	200710953	14	16665											
HAAO	23498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	42994588	42994588	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	42994588	G	C	42994588	3	2	265	1	0	0	0	0	1	0	0	0	6944	1203	42	4	14	4	HAAO	2	42994588	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	506168	42994588	200204785	15	16666											
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	69472576	69472579	+	Frame_Shift_Del	DEL	GCAC	GCAC	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	GCAC	GCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	-	69472579	GCAC	-	69472576	7	5	265	1	0	1	0	1	0	0	0	0	711	1203	42	0	1801	0	ANTXR1	2	69472576	Frame_Shift_Del	DEL	GCAC	TCGA-B9-4113-01A-01D-1252-08	26477988	69472576	173726797	16	16667											
EDAR	10913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109527287	109527287	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	109527287	C	T	109527287	2	4	265	1	0	0	0	0	0	0	0	1	4907	639	23	1		1	EDAR	2	109527287	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	40054711	109527287	133672086	17	16668											
BIN1	274	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	127818193	127818193	+	Missense_Mutation	SNP	C	C	G	rs117721706	byfrequency;alternate_allele	TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	127818193	C	G	127818193	3	3	265	1	0	0	0	0	1	0	0	0	1432	652	23	4	985	4	BIN1	2	127818193	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	18290906	127818193	115381180	18	16669											
XRCC5	7520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	216981563	216981564	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	216981564	-	C	216981563	7	5	265	1	0	1	1	0	0	0	0	0	17468	275	10	0	327	0	XRCC5	2	216981563	Frame_Shift_Ins	INS	-	TCGA-B9-4113-01A-01D-1252-08	89163370	216981563	26217810	19	16670											
TRNT1	51095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	3189651	3189651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	3189651	G	C	3189651	3	2	265	1	0	0	0	0	1	0	0	0	16585	1377	48	4	1144	4	TRNT1	3	3189651	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		3189651	194832779	20	16671											
OSBPL10	114884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	31774841	31774841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	31774841	G	A	31774841	3	1	265	1	0	0	0	0	1	0	0	0	11282	1029	36	2	1319	2	OSBPL10	3	31774841	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	28585190	31774841	166247589	21	16672											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142274792	142274792	+	Silent	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	142274792	A	T	142274792	2	4	265	1	0	0	0	0	0	0	0	1	1204	291	11	5		5	ATR	3	142274792	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	110499951	142274792	55747638	22	16673											
CRYGS	1427	broad.mit.edu	37	3	186256498	186256498	+	Missense_Mutation	SNP	C	C	T	rs201717880		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	186256498	C	T	186256498	3	4	265	1	0	0	0	0	1	0	0	0	3921	768	27	1	16	1	CRYGS	3	186256498	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	43981706	186256498	11765932	23	16674											
SLC26A1	10861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	985220	985220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	985220	G	A	985220	3	1	265	1	0	0	0	0	1	0	0	0	14527	1294	45	2	1944	2	SLC26A1	4	985220	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		985220	190169056	24	16675											
ACOX3	8310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8417674	8417674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	8417674	C	T	8417674	3	4	265	1	0	0	0	0	1	0	0	0	160	855	30	2	1969	2	ACOX3	4	8417674	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	7432454	8417674	182736602	25	16676											
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	22390249	22390249	+	Missense_Mutation	SNP	C	C	G	rs76872619		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	22390249	C	G	22390249	3	3	265	1	0	0	0	0	1	0	0	0	6646	593	21	4	924	4	GPR125	4	22390249	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	13972575	22390249	168764027	26	16677											
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57248668	57248668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	57248668	A	T	57248668	3	4	265	1	0	0	0	0	1	0	0	0	22	333	12	5	3022	5	AASDH	4	57248668	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	34858419	57248668	133905608	27	16678											
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89039327	89039327	+	Silent	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	89039327	A	G	89039327	2	3	265	1	0	0	0	0	0	0	0	1	69	98	4	3		3	ABCG2	4	89039327	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	31790659	89039327	102114949	28	16679											
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	115767018	115767018	+	Silent	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	115767018	G	A	115767018	2	1	265	1	0	0	0	0	0	0	0	1	10265	1164	41	2		2	NDST4	4	115767018	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	26727691	115767018	75387258	29	16680											
ASB5	140458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177136796	177136796	+	Silent	SNP	T	T	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	177136796	T	C	177136796	2	2	265	1	0	0	0	0	0	0	0	1	1026	1722	60	3		3	ASB5	4	177136796	Silent	SNP	T	TCGA-B9-4113-01A-01D-1252-08	61369778	177136796	14017480	30	16681											
FAM149A	25854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187077186	187077186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	187077186	A	G	187077186	3	3	265	1	0	0	0	0	1	0	0	0	5459	188	7	3	430	3	FAM149A	4	187077186	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	9940390	187077186	4077090	31	16682											
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38504185	38504185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	38504185	T	C	38504185	3	2	265	1	0	0	0	0	1	0	0	0	8787	1406	49	3	2007	3	LIFR	5	38504185	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08		38504185	142411075	32	16683											
RICTOR	253260	broad.mit.edu	37	5	38953603	38953603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	38953603	C	G	38953603	3	3	265	1	0	0	0	0	1	0	0	0	13371	595	21	4	2420	4	RICTOR	5	38953603	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	449418	38953603	141961657	33	16684											
C5orf34	375444	ucsc.edu	37	5	43490825	43490825	+	Silent	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	43490825	C	A	43490825	2	1	265	1	0	0	0	0	0	0	0	1	2295	813	29	4		4	C5orf34	5	43490825	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	4537222	43490825	137424435	34	16685											
PCDHGA4	56111	hgsc.bcm.edu	37	5	140735215	140735218	+	Frame_Shift_Del	DEL	GCAA	GCAA	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	GCAA	GCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	-	140735218	GCAA	-	140735215	7	5	265	1	0	1	0	1	0	0	0	0	11563	1203	42	0	450	0	PCDHGA4	5	140735215	Frame_Shift_Del	DEL	GCAA	TCGA-B9-4113-01A-01D-1252-08	97244390	140735215	40180045	35	16686	221	3									
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140735217	140735218	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	140735218	-	G	140735217	7	5	265	1	0	1	1	0	0	0	0	0	11563	117	5	0	452	0	PCDHGA4	5	140735217	Frame_Shift_Ins	INS	-	TCGA-B9-4113-01A-01D-1252-08	2	140735217	40180043	36	16687	221	3									
PCDHGA4	56111	hgsc.bcm.edu	37	5	140735218	140735218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	140735218	A	G	140735218	3	3	265	1	0	0	0	0	1	0	0	0	11563	64	3	3	453	3	PCDHGA4	5	140735218	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	1	140735218	40180042	37	16688	221	3									
SLC36A3	285641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150660717	150660717	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	150660717	G	T	150660717	4	4	265	1	0	0	0	0	0	1	0	0	14608	1024	36	4	418	4	SLC36A3	5	150660717	Nonsense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	9925499	150660717	30254543	38	16689											
RGS14	10636	hgsc.bcm.edu;broad.mit.edu	37	5	176797996	176797996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	176797996	G	T	176797996	3	4	265	1	0	0	0	0	1	0	0	0	13310	962	34	4	1260	4	RGS14	5	176797996	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	26137279	176797996	4117264	39	16690											
SQSTM1	8878	hgsc.bcm.edu	37	5	179248068	179248068	+	Silent	SNP	C	C	T	rs11548639		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	179248068	C	T	179248068	2	4	265	1	0	0	0	0	0	0	0	1	15142	776	27	1		1	SQSTM1	5	179248068	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	2450072	179248068	1667192	40	16691											
OR11A1	26531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29395381	29395381	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	29395381	T	G	29395381	3	3	265	1	0	0	0	0	1	0	0	0	10931	1783	62	5	913	5	OR11A1	6	29395381	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08		29395381	141719686	41	16692											
PNPLA1	285848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36269817	36269817	+	Missense_Mutation	SNP	G	G	A	rs182227800		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	36269817	G	A	36269817	3	1	265	1	0	0	0	0	1	0	0	0	12171	1174	41	2	1004	2	PNPLA1	6	36269817	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	6874436	36269817	134845250	42	16693											
HECA	51696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	139495590	139495590	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	-	139495590	A	-	139495590	7	5	265	1	0	1	0	1	0	0	0	0	7045	131	5	0	1391	0	HECA	6	139495590	Frame_Shift_Del	DEL	A	TCGA-B9-4113-01A-01D-1252-08	103225773	139495590	31619477	43	16694											
SEPT7	989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	35912377	35912377	+	Splice_Site	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	35912377	G	A	35912377	5	1	265	1	0	0	0	0	0	0	1	0	14082	1275	44	2	390	2	SEPT7	7	35912377	Splice_Site	SNP	G	TCGA-B9-4113-01A-01D-1252-08		35912377	123226286	44	16695											
PRKRIP1	79706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102040095	102040096	+	Splice_Site	DNP	GG	GG	AA	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	AA	102040096	GG	AA	102040095	5	1	265	1	0	0	0	0	0	0	1	0	12535	1014	35	2	316	2	PRKRIP1	7	102040095	Splice_Site	DNP	GG	TCGA-B9-4113-01A-01D-1252-08	66127718	102040095	57098568	45	16696											
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149129443	149129443	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	149129443	C	T	149129443	2	4	265	1	0	0	0	0	0	0	0	1	18162	564	20	2		2	ZNF777	7	149129443	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	47089348	149129443	10009220	46	16697											
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88201776	88201776	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	88201776	T	A	88201776	3	1	265	1	0	0	0	0	1	0	0	0	400	1490	52	5	697	5	AGTPBP1	9	88201776	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08		88201776	53011655	47	16698											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	137593045	137593045	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	-	137593045	A	-	137593045	7	5	265	1	0	1	0	1	0	0	0	0	3698	131	5	0	534	0	COL5A1	9	137593045	Frame_Shift_Del	DEL	A	TCGA-B9-4113-01A-01D-1252-08	49391269	137593045	3620386	48	16699											
ECD	11319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74896486	74896486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	74896486	T	G	74896486	3	3	265	1	0	0	0	0	1	0	0	0	4890	1838	64	5	262	5	ECD	10	74896486	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08		74896486	60638261	49	16700											
COX15	1355	hgsc.bcm.edu	37	10	101491791	101491791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	101491791	A	C	101491791	3	2	265	1	0	0	0	0	1	0	0	0	3766	72	3	5	1322	5	COX15	10	101491791	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	26595305	101491791	34042956	50	16701											
E2F8	79733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	19251275	19251275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	19251275	A	T	19251275	3	4	265	1	0	0	0	0	1	0	0	0	4875	188	7	5	1000	5	E2F8	11	19251275	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08		19251275	115755241	51	16702											
QSER1	79832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	32954930	32954930	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	32954930	C	A	32954930	4	1	265	1	0	0	0	0	0	1	0	0	12895	838	29	4	1745	4	QSER1	11	32954930	Nonsense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	13703655	32954930	102051586	52	16703											
MADD	8567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47304129	47304129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	47304129	T	G	47304129	3	3	265	1	0	0	0	0	1	0	0	0	9159	1609	56	5	1697	5	MADD	11	47304129	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	14349199	47304129	87702387	53	16704											
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	9006738	9006738	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	-	9006738	A	-	9006738	7	5	265	1	0	1	0	1	0	0	0	0	5	391	14	0	2687	0	A2ML1	12	9006738	Frame_Shift_Del	DEL	A	TCGA-B9-4113-01A-01D-1252-08		9006738	124845157	54	16705											
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu	37	12	18658292	18658292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	18658292	G	A	18658292	3	1	265	1	0	0	0	0	1	0	0	0	11918	1290	45	2	3183	2	PIK3C2G	12	18658292	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	9651554	18658292	115193603	55	16706											
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	41585335	41585335	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	41585335	C	T	41585335	4	4	265	1	0	0	0	0	0	1	0	0	11717	876	31	1	730	1	PDZRN4	12	41585335	Nonsense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	22927043	41585335	92266560	56	16707											
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112184083	112184083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	112184083	C	A	112184083	3	1	265	1	0	0	0	0	1	0	0	0	108	623	22	4	2398	4	ACAD10	12	112184083	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	70598748	112184083	21667812	57	16708											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	130184819	130184819	+	Silent	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	130184819	C	G	130184819	2	3	265	1	0	0	0	0	0	0	0	1	16059	813	29	4		4	TMEM132D	12	130184819	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	18000736	130184819	3667076	58	16709											
SLC46A3	283537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	29287510	29287510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	29287510	A	G	29287510	3	3	265	1	0	0	0	0	1	0	0	0	14659	420	15	3	1048	3	SLC46A3	13	29287510	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08		29287510	85882368	59	16710											
BRCA2	675	hgsc.bcm.edu	37	13	32913098	32913098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	32913098	A	G	32913098	3	3	265	1	0	0	0	0	1	0	0	0	1501	15	1	3	4644	3	BRCA2	13	32913098	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	3625588	32913098	82256780	60	16711											
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52548108	52548108	+	Silent	SNP	A	A	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	52548108	A	T	52548108	2	4	265	1	0	0	0	0	0	0	0	1	1191	407	15	5		5	ATP7B	13	52548108	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	19635010	52548108	62621770	61	16712											
RNF219	79596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	79190506	79190506	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	79190506	T	A	79190506	3	1	265	1	0	0	0	0	1	0	0	0	13495	1667	58	5	794	5	RNF219	13	79190506	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	26642398	79190506	35979372	62	16713											
PSME2	5721	ucsc.edu	37	14	24613239	24613239	+	Splice_Site	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	24613239	C	T	24613239	5	4	265	1	0	0	0	0	0	0	1	0	12717	695	24	2	234	2	PSME2	14	24613239	Splice_Site	SNP	C	TCGA-B9-4113-01A-01D-1252-08		24613239	82736301	63	16714											
SDR39U1	56948	hgsc.bcm.edu	37	14	24910963	24910963	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	24910963	C	G	24910963	3	3	265	1	0	0	0	0	1	0	0	0	13985	768	27	4	648	4	SDR39U1	14	24910963	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	297724	24910963	82438577	64	16715											
SPINT1	6692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41146021	41146021	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	41146021	C	T	41146021	2	4	265	1	0	0	0	0	0	0	0	1	15080	697	25	2		2	SPINT1	15	41146021	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08		41146021	61385371	65	16716											
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	43724401	43724401	+	Silent	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	43724401	G	A	43724401	2	1	265	1	0	0	0	0	0	0	0	1	16395	1161	41	2		2	TP53BP1	15	43724401	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	2578380	43724401	58806991	66	16717											
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	57730838	57730838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	57730838	C	G	57730838	3	3	265	1	0	0	0	0	1	0	0	0	3306	478	17	4	643	4	CGNL1	15	57730838	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	14006437	57730838	44800554	67	16718											
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058483	79058483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	79058483	A	G	79058483	3	3	265	1	0	0	0	0	1	0	0	0	271	159	6	3	1314	3	ADAMTS7	15	79058483	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	21327645	79058483	23472909	68	16719											
ST20	400410	hgsc.bcm.edu;bcgsc.ca	37	15	80191469	80191474	+	Splice_Site	DEL	TATGAG	TATGAG	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	TATGAG	TATGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	-	80191474	TATGAG	-	80191469	8	5	265	1	0	1	0	1	0	0	1	0	15225	1536	53	0	199	0	ST20	15	80191469	Splice_Site	DEL	TATGAG	TCGA-B9-4113-01A-01D-1252-08	1132986	80191469	22339923	69	16720											
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	94841734	94841734	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	94841734	C	T	94841734	2	4	265	1	0	0	0	0	0	0	0	1	9408	709	25	2		2	MCTP2	15	94841734	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	14650265	94841734	7689658	70	16721											
KIAA0556	23247	broad.mit.edu	37	16	27786370	27786370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	27786370	C	T	27786370	3	4	265	1	0	0	0	0	1	0	0	0	8190	643	23	1	4508	1	KIAA0556	16	27786370	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08		27786370	62568383	71	16722											
FANCA	2175	hgsc.bcm.edu	37	16	89883000	89883000	+	Missense_Mutation	SNP	G	G	C	rs76275444		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	89883000	G	C	89883000	3	2	265	1	0	0	0	0	1	0	0	0	5669	1020	36	4	4520	4	FANCA	16	89883000	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	62096630	89883000	471753	72	16723											
SLC43A2	124935	hgsc.bcm.edu	37	17	1494129	1494129	+	Missense_Mutation	SNP	G	G	A	rs145755178		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	1494129	G	A	1494129	3	1	265	1	0	0	0	0	1	0	0	0	14646	1000	35	2	688	2	SLC43A2	17	1494129	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		1494129	79701081	73	16724											
ZNF594	84622	ucsc.edu	37	17	5085331	5085331	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	5085331	T	G	5085331	3	3	265	1	0	0	0	0	1	0	0	0	18036	1725	60	5	206	5	ZNF594	17	5085331	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	3591202	5085331	76109879	74	16725											
CDRT4	284040	broad.mit.edu	37	17	15341130	15341130	+	Missense_Mutation	SNP	C	C	T	rs139647100		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	15341130	C	T	15341130	3	4	265	1	0	0	0	0	1	0	0	0	3178	768	27	1	43	1	CDRT4	17	15341130	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	10255799	15341130	65854080	75	16726											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29220728	29220728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	29220728	T	G	29220728	3	3	265	1	0	0	0	0	1	0	0	0	1076	1432	50	5	4939	5	ATAD5	17	29220728	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	13879598	29220728	51974482	76	16727											
TANC2	26115	hgsc.bcm.edu;broad.mit.edu	37	17	61466867	61466867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	61466867	C	A	61466867	3	1	265	1	0	0	0	0	1	0	0	0	15557	680	24	4	2849	4	TANC2	17	61466867	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	32246139	61466867	19728343	77	16728											
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66270212	66270212	+	Splice_Site	SNP	C	C	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	66270212	C	A	66270212	5	1	265	1	0	0	0	0	0	0	1	0	14425	811	28	4	1355	4	SLC16A6	17	66270212	Splice_Site	SNP	C	TCGA-B9-4113-01A-01D-1252-08	4803345	66270212	14924998	78	16729											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	7567846	7567846	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	-	7567846	T	-	7567846	7	5	265	1	0	1	0	1	0	0	0	0	12819	1596	56	0	32	0	PTPRM	18	7567846	Frame_Shift_Del	DEL	T	TCGA-B9-4113-01A-01D-1252-08		7567846	70509402	79	16730	222	2									
PTPRM	5797	bcgsc.ca	37	18	7567847	7567847	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	7567847	T	A	7567847	3	1	265	1	0	0	0	0	1	0	0	0	12819	1838	64	5	33	5	PTPRM	18	7567847	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	1	7567847	70509401	80	16731	222	2									
TAF4B	6875	broad.mit.edu	37	18	23895311	23895311	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	23895311	G	C	23895311	3	2	265	1	0	0	0	0	1	0	0	0	15539	942	33	4	1989	4	TAF4B	18	23895311	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	16327464	23895311	54181937	81	16732											
SALL3	27164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	76754972	76754972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	76754972	T	C	76754972	3	2	265	1	0	0	0	0	1	0	0	0	13825	1435	50	3	2987	3	SALL3	18	76754972	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	52859661	76754972	1322276	82	16733											
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2191111	2191111	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	2191111	C	G	2191111	3	3	265	1	0	0	0	0	1	0	0	0	4711	623	22	4	383	4	DOT1L	19	2191111	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08		2191111	56937872	83	16734											
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2216711	2216711	+	Silent	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	2216711	G	A	2216711	2	1	265	1	0	0	0	0	0	0	0	1	4711	1277	45	2		2	DOT1L	19	2216711	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	25600	2216711	56912272	84	16735											
SLC25A23	79085	hgsc.bcm.edu	37	19	6444308	6444308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	6444308	A	G	6444308	3	3	265	1	0	0	0	0	1	0	0	0	14499	188	7	3	338	3	SLC25A23	19	6444308	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	4227597	6444308	52684675	85	16736											
ZNF136	7695	broad.mit.edu;ucsc.edu	37	19	12297631	12297631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	12297631	G	T	12297631	3	4	265	1	0	0	0	0	1	0	0	0	17738	1183	41	4	452	4	ZNF136	19	12297631	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	5853323	12297631	46831352	86	16737											
SLC1A6	6511	broad.mit.edu	37	19	15067457	15067457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	15067457	C	T	15067457	3	4	265	1	0	0	0	0	1	0	0	0	14449	536	19	1	710	1	SLC1A6	19	15067457	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	2769826	15067457	44061526	87	16738											
CASP14	23581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15164633	15164633	+	Silent	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	15164633	C	T	15164633	2	4	265	1	0	0	0	0	0	0	0	1	2672	535	19	1		1	CASP14	19	15164633	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	97176	15164633	43964350	88	16739											
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16918705	16918705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	16918705	G	A	16918705	3	1	265	1	0	0	0	0	1	0	0	0	10788	1059	37	1	3694	1	NWD1	19	16918705	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	1754072	16918705	42210278	89	16740											
FCGBP	8857	hgsc.bcm.edu	37	19	40395978	40395978	+	Silent	SNP	G	G	A	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	A	40395978	G	A	40395978	2	1	265	1	0	0	0	0	0	0	0	1	5785	1306	46	2		2	FCGBP	19	40395978	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	23477273	40395978	18733005	90	16741											
ZNF285	26974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44896570	44896570	+	Missense_Mutation	SNP	C	C	G	rs144077949	byfrequency;alternate_allele	TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	44896570	C	G	44896570	3	3	265	1	0	0	0	0	1	0	0	0	17834	855	30	4	1704	4	ZNF285	19	44896570	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	4500592	44896570	14232413	91	16742											
EML2	24139	hgsc.bcm.edu	37	19	46142624	46142624	+	Missense_Mutation	SNP	A	A	C	rs201822741		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	C	46142624	A	C	46142624	3	2	265	1	0	0	0	0	1	0	0	0	5099	14	1	5	2014	5	EML2	19	46142624	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	1246054	46142624	12986359	92	16743											
DHDH	27294	hgsc.bcm.edu;broad.mit.edu	37	19	49438360	49438360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	49438360	C	T	49438360	3	4	265	1	0	0	0	0	1	0	0	0	4481	652	23	1	200	1	DHDH	19	49438360	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	3295736	49438360	9690623	93	16744											
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53669370	53669370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	53669370	C	G	53669370	3	3	265	1	0	0	0	0	1	0	0	0	18085	797	28	4	1667	4	ZNF665	19	53669370	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	4231010	53669370	5459613	94	16745											
LSS	4047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47626684	47626684	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	47626684	T	G	47626684	5	3	265	1	0	0	0	0	0	0	1	0	9072	1594	55	5	760	5	LSS	21	47626684	Splice_Site	SNP	T	TCGA-B9-4113-01A-01D-1252-08		47626684	503211	95	16746											
TOP3B	8940	hgsc.bcm.edu;broad.mit.edu	37	22	22319734	22319735	+	In_Frame_Ins	INS	-	-	TTG	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	TTG	22319735	-	TTG	22319734	7	5	265	1	0	1	1	0	0	0	0	0	16380	797	28	0	1762	0	TOP3B	22	22319734	In_Frame_Ins	INS	-	TCGA-B9-4113-01A-01D-1252-08		22319734	28984832	96	16747											
CYP2D6	1565	broad.mit.edu	37	22	42523507	42523516	+	Frame_Shift_Del	DEL	AGGGGGACGA	AGGGGGACGA	-	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	AGGGGGACGA	AGGGGGACGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	-	42523516	AGGGGGACGA	-	42523507	7	5	265	1	0	1	0	1	0	0	0	0	4171	188	7	0	390	0	CYP2D6	22	42523507	Frame_Shift_Del	DEL	AGGGGGACGA	TCGA-B9-4113-01A-01D-1252-08	20203773	42523507	8781059	97	16748											
ARSA	410	broad.mit.edu	37	22	51063617	51063617	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	G	51063617	T	G	51063617	3	3	265	1	0	0	0	0	1	0	0	0	987	1696	59	5	47	5	ARSA	22	51063617	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	8540110	51063617	240949	98	16749											
LONRF3	79836	hgsc.bcm.edu	37	X	118109101	118109101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	T	118109101	G	T	118109101	3	4	265	1	0	0	0	0	1	0	0	0	8903	1203	42	4	360	4	LONRF3	23	118109101	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		118109101	37161459	99	16750											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19420561	19420561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	19420561	G	T	19420561	3	4	266	1	0	0	0	0	1	0	0	0	16916	1058	37	4	1780	4	UBR4	1	19420561	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		19420561	229830060	1	16751											
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53236935	53236935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	53236935	C	A	53236935	3	1	266	1	0	0	0	0	1	0	0	0	18265	565	20	4	450	4	ZYG11B	1	53236935	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	33816374	53236935	196013686	2	16752											
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	67138996	67138996	+	Missense_Mutation	SNP	C	C	A	rs142151342	alternate_allele	TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	67138996	C	A	67138996	3	1	266	1	0	0	0	0	1	0	0	0	14219	797	28	4	639	4	SGIP1	1	67138996	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	13902061	67138996	182111625	3	16753											
CDC7	8317	hgsc.bcm.edu	37	1	91973853	91973853	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	91973853	G	C	91973853	3	2	266	1	0	0	0	0	1	0	0	0	3086	1020	36	4	244	4	CDC7	1	91973853	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	24834857	91973853	157276768	4	16754											
BCAR3	8412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94054731	94054731	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	94054731	C	T	94054731	2	4	266	1	0	0	0	0	0	0	0	1	1349	912	32	2		2	BCAR3	1	94054731	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	2080878	94054731	155195890	5	16755											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	116931576	116931576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	116931576	A	C	116931576	3	2	266	1	0	0	0	0	1	0	0	0	1128	333	12	5	731	5	ATP1A1	1	116931576	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	22876845	116931576	132319045	6	16756											
FAM72B	653820	hgsc.bcm.edu	37	1	120839913	120839913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	120839913	C	A	120839913	3	1	266	1	0	0	0	0	1	0	0	0	5622	913	32	4	82	4	FAM72B	1	120839913	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	3908337	120839913	128410708	7	16757											
CELF3	11189	hgsc.bcm.edu	37	1	151678722	151678722	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	151678722	T	C	151678722	2	2	266	1	0	0	0	0	0	0	0	1	3219	1722	60	3		3	CELF3	1	151678722	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	30838809	151678722	97571899	8	16758											
PGLYRP3	114771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153279661	153279661	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	153279661	G	C	153279661	4	2	266	1	0	0	0	0	0	1	0	0	11802	1372	48	4	911	4	PGLYRP3	1	153279661	Nonsense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	1600939	153279661	95970960	9	16759											
IRF2BP2	359948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	234743056	234743058	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	-	234743058	AGC	-	234743056	7	5	266	1	0	1	0	1	0	0	0	0	7837	72	3	0	176	0	IRF2BP2	1	234743056	In_Frame_Del	DEL	AGC	TCGA-B9-4114-01A-01D-1252-08	81463395	234743056	14507565	10	16760											
LCLAT1	253558	bcgsc.ca	37	2	30756180	30756181	+	In_Frame_Ins	INS	-	-	GTAGGTTATTCACACATT	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	GTAGGTTATTCACACATT	30756181	-	GTAGGTTATTCACACATT	30756180	7	5	266	1	0	1	1	0	0	0	0	0	8684	1362	47	0	488	0	LCLAT1	2	30756180	In_Frame_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08		30756180	212443193	11	16761											
CAPN13	92291	hgsc.bcm.edu	37	2	30955349	30955349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	30955349	A	T	30955349	3	4	266	1	0	0	0	0	1	0	0	0	2628	72	3	5	139	5	CAPN13	2	30955349	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	199169	30955349	212244024	12	16762											
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	99995867	99995867	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	99995867	T	G	99995867	3	3	266	1	0	0	0	0	1	0	0	0	5046	1461	51	5	2083	5	EIF5B	2	99995867	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	69040518	99995867	143203506	13	16763											
COL5A2	1290	hgsc.bcm.edu	37	2	189912941	189912941	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	189912941	T	C	189912941	2	2	266	1	0	0	0	0	0	0	0	1	3699	1538	54	3		3	COL5A2	2	189912941	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	89917074	189912941	53286432	14	16764											
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	202262967	202262967	+	Silent	SNP	G	G	A	rs201579398		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	202262967	G	A	202262967	2	1	266	1	0	0	0	0	0	0	0	1	16462	1281	45	2		2	TRAK2	2	202262967	Silent	SNP	G	TCGA-B9-4114-01A-01D-1252-08	12350026	202262967	40936406	15	16765											
FN1	2335	hgsc.bcm.edu	37	2	216232668	216232668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	216232668	C	G	216232668	3	3	266	1	0	0	0	0	1	0	0	0	5969	624	22	4	517	4	FN1	2	216232668	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	13969701	216232668	26966705	16	16766											
RUFY4	285180	hgsc.bcm.edu;broad.mit.edu	37	2	218954705	218954705	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	218954705	C	T	218954705	2	4	266	1	0	0	0	0	0	0	0	1	13754	805	28	2		2	RUFY4	2	218954705	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	2722037	218954705	24244668	17	16767											
SP140	11262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231177371	231177371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	231177371	C	T	231177371	3	4	266	1	0	0	0	0	1	0	0	0	14975	797	28	2	2799	2	SP140	2	231177371	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	12222666	231177371	12022002	18	16768											
C3orf35	339883	broad.mit.edu	37	3	37458846	37458846	+	Missense_Mutation	SNP	G	G	A	rs193097162		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	37458846	G	A	37458846	3	1	266	1	0	0	0	0	1	0	0	0	2227	1058	37	1	91	1	C3orf35	3	37458846	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		37458846	160563584	19	16769											
CCRL2	9034	broad.mit.edu	37	3	46449903	46449903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	46449903	C	A	46449903	3	1	266	1	0	0	0	0	1	0	0	0	2952	883	31	4	375	4	CCRL2	3	46449903	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	8991057	46449903	151572527	20	16770											
OR5H15	403274	hgsc.bcm.edu	37	3	97887854	97887854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	97887854	T	C	97887854	3	2	266	1	0	0	0	0	1	0	0	0	11168	1493	52	3	313	3	OR5H15	3	97887854	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	51437951	97887854	100134576	21	16771											
IFT57	55081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	107937434	107937434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	107937434	G	C	107937434	3	2	266	1	0	0	0	0	1	0	0	0	7569	942	33	4	883	4	IFT57	3	107937434	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	10049580	107937434	90084996	22	16772											
PVRL3	25945	hgsc.bcm.edu	37	3	110852638	110852638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	110852638	T	G	110852638	3	3	266	1	0	0	0	0	1	0	0	0	12854	1638	57	5	1248	5	PVRL3	3	110852638	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	2915204	110852638	87169792	23	16773											
STXBP5L	9515	broad.mit.edu	37	3	120952528	120952528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	120952528	C	A	120952528	3	1	266	1	0	0	0	0	1	0	0	0	15369	479	17	4	1219	4	STXBP5L	3	120952528	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	10099890	120952528	77069902	24	16774											
RARRES1	5918	hgsc.bcm.edu;broad.mit.edu	37	3	158422600	158422600	+	Missense_Mutation	SNP	G	G	C	rs140091959	byfrequency;alternate_allele	TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	158422600	G	C	158422600	3	2	266	1	0	0	0	0	1	0	0	0	13068	971	34	4	259	4	RARRES1	3	158422600	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	37470072	158422600	39599830	25	16775											
BCHE	590	bcgsc.ca	37	3	165504036	165504037	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	165504037	-	G	165504036	7	5	266	1	0	1	1	0	0	0	0	0	1358	1490	52	0	235	0	BCHE	3	165504036	Frame_Shift_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08	7081436	165504036	32518394	26	16776											
GAK	2580	broad.mit.edu	37	4	858925	858925	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	858925	T	G	858925	3	3	266	1	0	0	0	0	1	0	0	0	6202	1696	59	5	808	5	GAK	4	858925	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08		858925	190295351	27	16777											
SH3BP2	6452	hgsc.bcm.edu;bcgsc.ca	37	4	2831767	2831768	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	2831768	-	C	2831767	7	5	266	1	0	1	1	0	0	0	0	0	14258	1306	46	0	1419	0	SH3BP2	4	2831767	Frame_Shift_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08	1972842	2831767	188322509	28	16778											
EVC	2121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	5721079	5721079	+	Silent	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	5721079	G	A	5721079	2	1	266	1	0	0	0	0	0	0	0	1	5287	1045	37	1		1	EVC	4	5721079	Silent	SNP	G	TCGA-B9-4114-01A-01D-1252-08	2889312	5721079	185433197	29	16779											
PDS5A	23244	hgsc.bcm.edu	37	4	39929607	39929607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	39929607	G	C	39929607	3	2	266	1	0	0	0	0	1	0	0	0	11698	1174	41	4	3854	4	PDS5A	4	39929607	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	34208528	39929607	151224669	30	16780											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	44449784	44449785	+	Missense_Mutation	DNP	TG	TG	GA	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	GA	44449785	TG	GA	44449784	3	3	266	1	0	0	0	0	1	0	0	0	8122	1812	63	5	672	5	KCTD8	4	44449784	Missense_Mutation	DNP	TG	TCGA-B9-4114-01A-01D-1252-08	4520177	44449784	146704492	31	16781											
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	54343092	54343092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	54343092	C	T	54343092	3	4	266	1	0	0	0	0	1	0	0	0	8872	739	26	2	478	2	LNX1	4	54343092	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	9893308	54343092	136811184	32	16782											
UGT2A3	79799	hgsc.bcm.edu	37	4	69816984	69816984	+	Silent	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	69816984	A	G	69816984	2	3	266	1	0	0	0	0	0	0	0	1	16967	59	3	3		3	UGT2A3	4	69816984	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08	15473892	69816984	121337292	33	16783											
AGPAT9	84803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84457815	84457815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	84457815	T	C	84457815	3	2	266	1	0	0	0	0	1	0	0	0	392	1580	55	3	42	3	AGPAT9	4	84457815	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	14640831	84457815	106696461	34	16784											
ANKRD50	57182	hgsc.bcm.edu	37	4	125591236	125591236	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	125591236	C	G	125591236	3	3	266	1	0	0	0	0	1	0	0	0	677	922	32	4	1097	4	ANKRD50	4	125591236	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	41133421	125591236	65563040	35	16785											
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	9119220	9119220	+	Silent	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	9119220	A	T	9119220	2	4	266	1	0	0	0	0	0	0	0	1	14050	291	11	5		5	SEMA5A	5	9119220	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08		9119220	171796040	36	16786											
CDH6	1004	hgsc.bcm.edu	37	5	31294177	31294177	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	31294177	A	C	31294177	3	2	266	1	0	0	0	0	1	0	0	0	3116	159	6	5	343	5	CDH6	5	31294177	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	22174957	31294177	149621083	37	16787											
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34757668	34757668	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	34757668	C	T	34757668	2	4	266	1	0	0	0	0	0	0	0	1	13021	581	21	2		2	RAI14	5	34757668	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	3463491	34757668	146157592	38	16788											
PARP8	79668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	50123848	50123848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	50123848	T	A	50123848	3	1	266	1	0	0	0	0	1	0	0	0	11472	1841	64	5	2126	5	PARP8	5	50123848	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	15366180	50123848	130791412	39	16789											
GPR98	84059	hgsc.bcm.edu	37	5	89923119	89923119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	89923119	T	C	89923119	3	2	266	1	0	0	0	0	1	0	0	0	6728	1435	50	3	790	3	GPR98	5	89923119	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	39799271	89923119	90992141	40	16790											
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	92929424	92929424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	92929424	C	A	92929424	3	1	266	1	0	0	0	0	1	0	0	0	10634	855	30	4	1158	4	NR2F1	5	92929424	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	3006305	92929424	87985836	41	16791											
POU5F2	134187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	93076682	93076682	+	Silent	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	93076682	A	T	93076682	2	4	266	1	0	0	0	0	0	0	0	1	12290	233	9	5		5	POU5F2	5	93076682	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08	147258	93076682	87838578	42	16792											
FNIP1	96459	broad.mit.edu	37	5	131006178	131006178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	131006178	G	A	131006178	3	1	266	1	0	0	0	0	1	0	0	0	5982	1294	45	2	430	2	FNIP1	5	131006178	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	37929496	131006178	49909082	43	16793											
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131042155	131042155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	131042155	C	A	131042155	3	1	266	1	0	0	0	0	1	0	0	0	5982	536	19	4	2677	4	FNIP1	5	131042155	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	35977	131042155	49873105	44	16794											
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140811171	140811177	+	Frame_Shift_Del	DEL	GGTATGT	GGTATGT	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	GGTATGT	GGTATGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	-	140811177	GGTATGT	-	140811171	7	5	266	1	0	1	0	1	0	0	0	0	11560	1116	39	0	847	0	PCDHGA12	5	140811171	Frame_Shift_Del	DEL	GGTATGT	TCGA-B9-4114-01A-01D-1252-08	9769016	140811171	40104089	45	16795											
HIVEP1	3096	broad.mit.edu	37	6	12123740	12123740	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	12123740	T	C	12123740	2	2	266	1	0	0	0	0	0	0	0	1	7193	1838	64	3		3	HIVEP1	6	12123740	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08		12123740	158991327	46	16796											
HLA-DQA2	3118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32713781	32713781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	32713781	C	T	32713781	3	4	266	1	0	0	0	0	1	0	0	0	7212	913	32	2	555	2	HLA-DQA2	6	32713781	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	20590041	32713781	138401286	47	16797											
LEMD2	221496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33748926	33748926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	33748926	A	C	33748926	3	2	266	1	0	0	0	0	1	0	0	0	8727	98	4	5	677	5	LEMD2	6	33748926	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	1035145	33748926	137366141	48	16798											
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43251695	43251695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	43251695	C	A	43251695	3	1	266	1	0	0	0	0	1	0	0	0	16688	564	20	4	3267	4	TTBK1	6	43251695	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	9502769	43251695	127863372	49	16799											
HTR1B	3351	broad.mit.edu	37	6	78172192	78172192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	78172192	C	T	78172192	3	4	266	1	0	0	0	0	1	0	0	0	7444	768	27	1	247	1	HTR1B	6	78172192	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	34920497	78172192	92942875	50	16800											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117746764	117746764	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	117746764	C	G	117746764	3	3	266	1	0	0	0	0	1	0	0	0	13544	710	25	4	7159	4	ROS1	6	117746764	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	39574572	117746764	53368303	51	16801											
TMEM184A	202915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1590513	1590513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	1590513	G	A	1590513	3	1	266	1	0	0	0	0	1	0	0	0	16116	1000	35	2	944	2	TMEM184A	7	1590513	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		1590513	157548150	52	16802											
TWISTNB	221830	hgsc.bcm.edu	37	7	19738026	19738026	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	19738026	T	C	19738026	2	2	266	1	0	0	0	0	0	0	0	1	16796	1838	64	3		3	TWISTNB	7	19738026	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	18147513	19738026	139400637	53	16803											
UPK3B	80761	hgsc.bcm.edu	37	7	76141063	76141063	+	Missense_Mutation	SNP	C	C	G	rs71552451		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	76141063	C	G	76141063	3	3	266	1	0	0	0	0	1	0	0	0	17023	680	24	4	496	4	UPK3B	7	76141063	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	56403037	76141063	82997600	54	16804											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu	37	7	82763635	82763635	+	Silent	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	82763635	A	G	82763635	2	3	266	1	0	0	0	0	0	0	0	1	11590	446	16	3		3	PCLO	7	82763635	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08	6622572	82763635	76375028	55	16805											
TFR2	7036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100228607	100228607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	100228607	C	T	100228607	3	4	266	1	0	0	0	0	1	0	0	0	15823	739	26	2	1270	2	TFR2	7	100228607	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	17464972	100228607	58910056	56	16806											
CHRM2	1129	hgsc.bcm.edu	37	7	136699700	136699700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	136699700	G	C	136699700	3	2	266	1	0	0	0	0	1	0	0	0	3379	1203	42	4	90	4	CHRM2	7	136699700	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	36471093	136699700	22438963	57	16807											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151882674	151882674	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	151882674	T	G	151882674	3	3	266	1	0	0	0	0	1	0	0	0	9629	1841	64	5	9788	5	MLL3	7	151882674	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	15182974	151882674	7255989	58	16808											
AGPAT5	55326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	6614714	6614714	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	6614714	T	A	6614714	3	1	266	1	0	0	0	0	1	0	0	0	390	1432	50	5	930	5	AGPAT5	8	6614714	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08		6614714	139749308	59	16809											
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	9413684	9413684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	9413684	C	G	9413684	3	3	266	1	0	0	0	0	1	0	0	0	16331	644	23	4	237	4	TNKS	8	9413684	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	2798970	9413684	136950338	60	16810											
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	22464154	22464154	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	22464154	T	A	22464154	3	1	266	1	0	0	0	0	1	0	0	0	8272	1725	60	5	195	5	KIAA1967	8	22464154	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	13050470	22464154	123899868	61	16811											
ZNF703	80139	hgsc.bcm.edu	37	8	37555597	37555597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	37555597	G	A	37555597	3	1	266	1	0	0	0	0	1	0	0	0	18118	1203	42	2	1184	2	ZNF703	8	37555597	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	15091443	37555597	108808425	62	16812											
WWP1	11059	hgsc.bcm.edu	37	8	87460473	87460473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	87460473	A	G	87460473	3	3	266	1	0	0	0	0	1	0	0	0	17427	449	16	3	2161	3	WWP1	8	87460473	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	49904876	87460473	58903549	63	16813											
MTDH	92140	hgsc.bcm.edu	37	8	98657042	98657042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	98657042	T	C	98657042	3	2	266	1	0	0	0	0	1	0	0	0	9924	1580	55	3	310	3	MTDH	8	98657042	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	11196569	98657042	47706980	64	16814											
KCNS2	3788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99441267	99441267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	99441267	G	T	99441267	4	4	266	1	0	0	0	0	0	1	0	0	8096	1175	41	4	1062	4	KCNS2	8	99441267	Nonsense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	784225	99441267	46922755	65	16815											
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139164000	139164000	+	Silent	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	139164000	G	T	139164000	2	4	266	1	0	0	0	0	0	0	0	1	5453	1306	46	4		4	FAM135B	8	139164000	Silent	SNP	G	TCGA-B9-4114-01A-01D-1252-08	39722733	139164000	7200022	66	16816	223	2									
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139164004	139164004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	139164004	T	C	139164004	3	2	266	1	0	0	0	0	1	0	0	0	5453	1609	56	3	1538	3	FAM135B	8	139164004	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	4	139164004	7200018	67	16817	223	2									
UNC13B	10497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35375163	35375163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	35375163	A	G	35375163	3	3	266	1	0	0	0	0	1	0	0	0	16997	101	4	3	1383	3	UNC13B	9	35375163	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08		35375163	105838268	68	16818											
TNC	3371	broad.mit.edu;bcgsc.ca	37	9	117792668	117792668	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	-	117792668	G	-	117792668	7	5	266	1	0	1	0	1	0	0	0	0	16282	987	35	0	688	0	TNC	9	117792668	Frame_Shift_Del	DEL	G	TCGA-B9-4114-01A-01D-1252-08	82417505	117792668	23420763	69	16819											
ABL1	25	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	133748371	133748371	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	133748371	C	T	133748371	2	4	266	1	0	0	0	0	0	0	0	1	92	581	21	2		2	ABL1	9	133748371	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	15955703	133748371	7465060	70	16820											
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	43315737	G	T	43315737	3	4	266	1	0	0	0	0	1	0	0	0	1472	991	35	4	2692	4	BMS1	10	43315737	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		43315737	92219010	71	16821											
NODAL	4838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72195424	72195424	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	72195424	T	A	72195424	3	1	266	1	0	0	0	0	1	0	0	0	10525	1551	54	5	542	5	NODAL	10	72195424	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	28879687	72195424	63339323	72	16822											
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103917239	103917239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	103917239	C	T	103917239	3	4	266	1	0	0	0	0	1	0	0	0	10536	710	25	2	382	2	NOLC1	10	103917239	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	31721815	103917239	31617508	73	16823											
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1466623	1466623	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	1466623	C	T	1466623	2	4	266	1	0	0	0	0	0	0	0	1	1526	477	17	2		2	BRSK2	11	1466623	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08		1466623	133539893	74	16824											
EIF3M	10480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	32623898	32623898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	32623898	A	T	32623898	3	4	266	1	0	0	0	0	1	0	0	0	5025	14	1	5	1120	5	EIF3M	11	32623898	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	31157275	32623898	102382618	75	16825											
DGKZ	8525	hgsc.bcm.edu	37	11	46388524	46388524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	46388524	G	A	46388524	3	1	266	1	0	0	0	0	1	0	0	0	4476	1087	38	1	1164	1	DGKZ	11	46388524	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	13764626	46388524	88617992	76	16826											
OR5M3	219482	hgsc.bcm.edu	37	11	56237625	56237625	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	56237625	C	G	56237625	3	3	266	1	0	0	0	0	1	0	0	0	11182	739	26	4	576	4	OR5M3	11	56237625	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	9849101	56237625	78768891	77	16827											
TMX2	51075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57480106	57480106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	57480106	C	A	57480106	3	1	266	1	0	0	0	0	1	0	0	0	16279	507	18	4	18	4	TMX2	11	57480106	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	1242481	57480106	77526410	78	16828											
FAU	2197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64889268	64889269	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	TG	64889269	GC	TG	64889268	3	4	266	1	0	0	0	0	1	0	0	0	5701	1074	38	4	399	4	FAU	11	64889268	Missense_Mutation	DNP	GC	TCGA-B9-4114-01A-01D-1252-08	7409162	64889268	70117248	79	16829											
SIK2	23235	hgsc.bcm.edu;broad.mit.edu	37	11	111590501	111590501	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	111590501	C	T	111590501	2	4	266	1	0	0	0	0	0	0	0	1	14331	813	29	2		2	SIK2	11	111590501	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	46701233	111590501	23416015	80	16830											
OAF	220323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120097580	120097581	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	CA	120097581	AC	CA	120097580	3	2	266	1	0	0	0	0	1	0	0	0	10805	159	6	5	432	5	OAF	11	120097580	Missense_Mutation	DNP	AC	TCGA-B9-4114-01A-01D-1252-08	8507079	120097580	14908936	81	16831											
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56558312	56558312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	56558312	T	G	56558312	3	3	266	1	0	0	0	0	1	0	0	0	14789	1754	61	5	309	5	SMARCC2	12	56558312	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08		56558312	77293583	82	16832											
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57861143	57861143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	57861143	C	A	57861143	3	1	266	1	0	0	0	0	1	0	0	0	6444	536	19	4	970	4	GLI1	12	57861143	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	1302831	57861143	75990752	83	16833											
C12orf66	144577	hgsc.bcm.edu;broad.mit.edu	37	12	64615826	64615826	+	Silent	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	64615826	G	C	64615826	2	2	266	1	0	0	0	0	0	0	0	1	1711	1103	39	4		4	C12orf66	12	64615826	Silent	SNP	G	TCGA-B9-4114-01A-01D-1252-08	6754683	64615826	69236069	84	16834											
CEP290	80184	ucsc.edu	37	12	88482834	88482834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	88482834	A	G	88482834	3	3	266	1	0	0	0	0	1	0	0	0	3255	372	13	3	3531	3	CEP290	12	88482834	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	23867008	88482834	45369061	85	16835											
MYO1H	283446	hgsc.bcm.edu;broad.mit.edu	37	12	109834319	109834319	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	-	109834319	A	-	109834319	7	5	266	1	0	1	0	1	0	0	0	0	10082	275	10	0	383	0	MYO1H	12	109834319	Frame_Shift_Del	DEL	A	TCGA-B9-4114-01A-01D-1252-08	21351485	109834319	24017576	86	16836											
PEBP1	5037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118577333	118577333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	118577333	G	A	118577333	3	1	266	1	0	0	0	0	1	0	0	0	11720	1203	42	2	333	2	PEBP1	12	118577333	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	8743014	118577333	15274562	87	16837											
ZCCHC8	55596	hgsc.bcm.edu;broad.mit.edu	37	12	122964832	122964833	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	122964833	-	A	122964832	7	5	266	1	0	1	1	0	0	0	0	0	17606	603	21	0	1094	0	ZCCHC8	12	122964832	Frame_Shift_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08	4387499	122964832	10887063	88	16838											
STX2	2054	ucsc.edu	37	12	131280600	131280600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	131280600	C	A	131280600	3	1	266	1	0	0	0	0	1	0	0	0	15357	477	17	4	100	4	STX2	12	131280600	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	8315768	131280600	2571295	89	16839											
PARP4	143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25067776	25067776	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	25067776	T	C	25067776	2	2	266	1	0	0	0	0	0	0	0	1	11470	1722	60	3		3	PARP4	13	25067776	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08		25067776	90102102	90	16840											
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48830432	48830433	+	In_Frame_Ins	INS	-	-	CAA	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	CAA	48830433	-	CAA	48830432	7	5	266	1	0	1	1	0	0	0	0	0	7920	1809	63	0	376	0	ITM2B	13	48830432	In_Frame_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08	23762656	48830432	66339446	91	16841	224	2									
ITM2B	9445	hgsc.bcm.edu	37	13	48830433	48830433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	48830433	G	C	48830433	3	2	266	1	0	0	0	0	1	0	0	0	7920	1291	45	4	377	4	ITM2B	13	48830433	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	1	48830433	66339445	92	16842	224	2									
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24617213	24617213	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	24617213	C	G	24617213	3	3	266	1	0	0	0	0	1	0	0	0	13500	536	19	4	227	4	RNF31	14	24617213	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08		24617213	82732327	93	16843											
KIAA0391	9692	hgsc.bcm.edu	37	14	35593087	35593087	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	35593087	T	C	35593087	2	2	266	1	0	0	0	0	0	0	0	1	8179	1712	60	3		3	KIAA0391	14	35593087	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	10975874	35593087	71756453	94	16844											
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	45433529	45433529	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	-	45433529	C	-	45433529	7	5	266	1	0	1	0	1	0	0	0	0	5510	477	17	0	1907	0	FAM179B	14	45433529	Frame_Shift_Del	DEL	C	TCGA-B9-4114-01A-01D-1252-08	9840442	45433529	61916011	95	16845											
SERPINA1	5265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94849213	94849213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	94849213	T	G	94849213	3	3	266	1	0	0	0	0	1	0	0	0	14099	1580	55	5	910	5	SERPINA1	14	94849213	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	49415684	94849213	12500327	96	16846											
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102675938	102675938	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	102675938	T	C	102675938	2	2	266	1	0	0	0	0	0	0	0	1	17292	1432	50	3		3	WDR20	14	102675938	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	7826725	102675938	4673602	97	16847											
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40590557	40590557	+	Missense_Mutation	SNP	G	G	A	rs201305253		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	40590557	G	A	40590557	3	1	266	1	0	0	0	0	1	0	0	0	12035	1059	37	1	2623	1	PLCB2	15	40590557	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		40590557	61940835	98	16848											
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65239709	65239709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	65239709	G	T	65239709	3	4	266	1	0	0	0	0	1	0	0	0	624	1357	47	4	1297	4	ANKDD1A	15	65239709	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	24649152	65239709	37291683	99	16849											
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu	37	15	65989618	65989618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	65989618	A	T	65989618	3	4	266	1	0	0	0	0	1	0	0	0	4435	156	6	5	2838	5	DENND4A	15	65989618	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	749909	65989618	36541774	100	16850											
FAM154B	283726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	82574679	82574679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	82574679	A	C	82574679	3	2	266	1	0	0	0	0	1	0	0	0	5468	217	8	5	483	5	FAM154B	15	82574679	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	16585061	82574679	19956713	101	16851											
IFT140	9742	broad.mit.edu	37	16	1574816	1574816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	1574816	C	T	1574816	3	4	266	1	0	0	0	0	1	0	0	0	7563	768	27	1	1458	1	IFT140	16	1574816	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08		1574816	88779937	102	16852											
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23646407	23646407	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	23646407	A	T	23646407	3	4	266	1	0	0	0	0	1	0	0	0	11413	275	10	5	2140	5	PALB2	16	23646407	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	22071591	23646407	66708346	103	16853											
RNF40	9810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30776526	30776526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	30776526	A	T	30776526	3	4	266	1	0	0	0	0	1	0	0	0	13506	275	10	5	818	5	RNF40	16	30776526	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	7130119	30776526	59578227	104	16854											
CYB5D1	124637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7762716	7762716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	7762716	C	T	7762716	3	4	266	1	0	0	0	0	1	0	0	0	4126	855	30	2	487	2	CYB5D1	17	7762716	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08		7762716	73432494	105	16855											
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37876080	37876080	+	Silent	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	37876080	A	C	37876080	2	2	266	1	0	0	0	0	0	0	0	1	5208	296	11	5		5	ERBB2	17	37876080	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08	30113364	37876080	43319130	106	16856											
PLEKHH3	79990	broad.mit.edu	37	17	40822333	40822333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	40822333	G	A	40822333	3	1	266	1	0	0	0	0	1	0	0	0	12085	1087	38	1	777	1	PLEKHH3	17	40822333	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	2946253	40822333	40372877	107	16857											
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42275086	42275086	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	42275086	C	A	42275086	4	1	266	1	0	0	0	0	0	1	0	0	1218	864	30	4	1044	4	ATXN7L3	17	42275086	Nonsense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	1452753	42275086	38920124	108	16858											
TTLL6	284076	broad.mit.edu	37	17	46865176	46865176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	46865176	G	A	46865176	3	1	266	1	0	0	0	0	1	0	0	0	16743	1203	42	2	1109	2	TTLL6	17	46865176	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	4590090	46865176	34330034	109	16859											
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48628196	48628196	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	48628196	G	C	48628196	3	2	266	1	0	0	0	0	1	0	0	0	15018	1261	44	4	1343	4	SPATA20	17	48628196	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	1763020	48628196	32567014	110	16860											
ABCA6	23460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67108373	67108373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	67108373	C	T	67108373	3	4	266	1	0	0	0	0	1	0	0	0	36	681	24	2	2866	2	ABCA6	17	67108373	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	18480177	67108373	14086837	111	16861											
TMEM104	54868	broad.mit.edu	37	17	72832672	72832672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	72832672	G	A	72832672	3	1	266	1	0	0	0	0	1	0	0	0	16030	1087	38	1	1371	1	TMEM104	17	72832672	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	5724299	72832672	8362538	112	16862											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu	37	17	76445563	76445563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	76445563	T	C	76445563	3	2	266	1	0	0	0	0	1	0	0	0	4603	1638	57	3	2296	3	DNAH17	17	76445563	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	3612891	76445563	4749647	113	16863											
TAF4B	6875	broad.mit.edu	37	18	23969874	23969874	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	23969874	T	C	23969874	2	2	266	1	0	0	0	0	0	0	0	1	15539	1654	58	3		3	TAF4B	18	23969874	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08		23969874	54107374	114	16864											
PRKCSH	5589	hgsc.bcm.edu	37	19	11558373	11558373	+	Silent	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	11558373	A	G	11558373	2	3	266	1	0	0	0	0	0	0	0	1	12526	69	3	3		3	PRKCSH	19	11558373	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08		11558373	47570610	115	16865											
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19823080	19823080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	19823080	C	A	19823080	3	1	266	1	0	0	0	0	1	0	0	0	17740	478	17	4	922	4	ZNF14	19	19823080	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	8264707	19823080	39305903	116	16866											
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36050918	36050918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	36050918	G	T	36050918	3	4	266	1	0	0	0	0	1	0	0	0	1145	1319	46	4	2326	4	ATP4A	19	36050918	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	16227838	36050918	23078065	117	16867											
SOX12	6666	hgsc.bcm.edu	37	20	307296	307296	+	Missense_Mutation	SNP	A	A	G	rs73574574		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	307296	A	G	307296	3	3	266	1	0	0	0	0	1	0	0	0	14956	304	11	3	730	3	SOX12	20	307296	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08		307296	62718224	118	16868											
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3090943	3090943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	3090943	G	A	3090943	3	1	266	1	0	0	0	0	1	0	0	0	16906	991	35	2	194	2	UBOX5	20	3090943	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	2783647	3090943	59934577	119	16869											
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44512145	44512145	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	T	44512145	A	T	44512145	3	4	266	1	0	0	0	0	1	0	0	0	18252	101	4	5	916	5	ZSWIM1	20	44512145	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	41421202	44512145	18513375	120	16870											
GRAMD4	23151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	47068788	47068788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	A	47068788	G	A	47068788	3	1	266	1	0	0	0	0	1	0	0	0	6759	1087	38	1	1183	1	GRAMD4	22	47068788	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		47068788	4235778	121	16871											
TBX22	50945	hgsc.bcm.edu	37	X	79286336	79286336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	C	79286336	G	C	79286336	3	2	266	1	0	0	0	0	1	0	0	0	15670	1029	36	4	1319	4	TBX22	23	79286336	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		79286336	75984224	122	16872											
SLC6A8	6535	hgsc.bcm.edu	37	X	152956939	152956939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	G	152956939	A	G	152956939	3	3	266	1	0	0	0	0	1	0	0	0	14703	101	4	3	585	3	SLC6A8	23	152956939	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	73670603	152956939	2313621	123	16873											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu	37	1	22903356	22903356	+	Missense_Mutation	SNP	G	G	C	rs139777546	byfrequency;alternate_allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	22903356	G	C	22903356	3	2	267	1	0	0	0	0	1	0	0	0	5175	1116	39	4	816	4	EPHA8	1	22903356	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08		22903356	226347265	1	16874											
PIGV	55650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27121059	27121059	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	27121059	C	T	27121059	2	4	267	1	0	0	0	0	0	0	0	1	11908	825	29	2		2	PIGV	1	27121059	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	4217703	27121059	222129562	2	16875											
SLC9A1	6548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27428600	27428600	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	27428600	C	T	27428600	2	4	267	1	0	0	0	0	0	0	0	1	14722	697	25	2		2	SLC9A1	1	27428600	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	307541	27428600	221822021	3	16876											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39907695	39907695	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	39907695	T	G	39907695	3	3	267	1	0	0	0	0	1	0	0	0	9151	1403	49	5	19000	5	MACF1	1	39907695	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	12479095	39907695	209342926	4	16877											
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85491700	85491700	+	Silent	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	85491700	A	G	85491700	2	3	267	1	0	0	0	0	0	0	0	1	9404	214	8	3		3	MCOLN3	1	85491700	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	45584005	85491700	163758921	5	16878											
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160105304	160105304	+	Silent	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	160105304	C	A	160105304	2	1	267	1	0	0	0	0	0	0	0	1	1129	697	25	4		4	ATP1A2	1	160105304	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	74613604	160105304	89145317	6	16879											
ATF6	22926	hgsc.bcm.edu	37	1	161748090	161748090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	161748090	G	C	161748090	3	2	267	1	0	0	0	0	1	0	0	0	1084	1175	41	4	145	4	ATF6	1	161748090	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	1642786	161748090	87502531	7	16880											
F13B	2165	broad.mit.edu	37	1	197021793	197021794	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	197021794	TC	-	197021793	7	5	267	1	0	1	0	1	0	0	0	0	5343	1783	62	0	475	0	F13B	1	197021793	Frame_Shift_Del	DEL	TC	TCGA-B9-4115-01A-01D-1252-08	35273703	197021793	52228828	8	16881											
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209964089	209964089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	209964089	G	C	209964089	3	2	267	1	0	0	0	0	1	0	0	0	7841	991	35	4	604	4	IRF6	1	209964089	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	12942296	209964089	39286532	9	16882											
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	45879507	45879507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	45879507	G	C	45879507	3	2	267	1	0	0	0	0	1	0	0	0	12521	1000	35	4	270	4	PRKCE	2	45879507	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08		45879507	197319866	10	16883											
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	100019166	100019166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	100019166	C	T	100019166	3	4	267	1	0	0	0	0	1	0	0	0	13252	855	30	2	285	2	REV1	2	100019166	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	54139659	100019166	143180207	11	16884											
LCT	3938	broad.mit.edu	37	2	136575050	136575050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	136575050	G	A	136575050	3	1	267	1	0	0	0	0	1	0	0	0	8700	1087	38	1	4263	1	LCT	2	136575050	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	36555884	136575050	106624323	12	16885											
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13415370	13415370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	13415370	G	A	13415370	3	1	267	1	0	0	0	0	1	0	0	0	10767	1348	47	2	4344	2	NUP210	3	13415370	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08		13415370	184607060	13	16886											
PLCL2	23228	hgsc.bcm.edu	37	3	17053310	17053310	+	Silent	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	17053310	G	C	17053310	2	2	267	1	0	0	0	0	0	0	0	1	12047	1335	47	4		4	PLCL2	3	17053310	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	3637940	17053310	180969120	14	16887											
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36873055	36873055	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	36873055	C	T	36873055	2	4	267	1	0	0	0	0	0	0	0	1	16466	697	25	2		2	TRANK1	3	36873055	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	19819745	36873055	161149375	15	16888											
ACAA1	30	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38178134	38178134	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	38178134	C	G	38178134	3	3	267	1	0	0	0	0	1	0	0	0	104	507	18	4	1104	4	ACAA1	3	38178134	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	1305079	38178134	159844296	16	16889											
CTBP1	1487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	1232016	1232016	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	1232016	A	-	1232016	7	5	267	1	0	1	0	1	0	0	0	0	3999	175	7	0	1204	0	CTBP1	4	1232016	Frame_Shift_Del	DEL	A	TCGA-B9-4115-01A-01D-1252-08		1232016	189922260	17	16890											
HTT	3064	broad.mit.edu	37	4	3201562	3201562	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	3201562	C	T	3201562	2	4	267	1	0	0	0	0	0	0	0	1	7464	581	21	2		2	HTT	4	3201562	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	1969546	3201562	187952714	18	16891											
HPSE	10855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84243394	84243394	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	84243394	G	A	84243394	2	1	267	1	0	0	0	0	0	0	0	1	7351	1024	36	2		2	HPSE	4	84243394	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	81041832	84243394	106910882	19	16892											
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159092402	159092402	+	Silent	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	159092402	A	T	159092402	2	4	267	1	0	0	0	0	0	0	0	1	5533	175	7	5		5	FAM198B	4	159092402	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	74849008	159092402	32061874	20	16893											
WDR17	116966	hgsc.bcm.edu	37	4	177081146	177081146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	177081146	A	G	177081146	3	3	267	1	0	0	0	0	1	0	0	0	17289	318	11	3	2673	3	WDR17	4	177081146	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	17988744	177081146	14073130	21	16894											
FAM173B	134145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	10249973	10249973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	10249973	C	T	10249973	3	4	267	1	0	0	0	0	1	0	0	0	5498	690	24	2	708	2	FAM173B	5	10249973	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08		10249973	170665287	22	16895											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	66438012	66438022	+	Frame_Shift_Del	DEL	AGGCAGAATTT	AGGCAGAATTT	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	AGGCAGAATTT	AGGCAGAATTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	66438022	AGGCAGAATTT	-	66438012	7	5	267	1	0	1	0	1	0	0	0	0	9334	72	3	0	2772	0	MAST4	5	66438012	Frame_Shift_Del	DEL	AGGCAGAATTT	TCGA-B9-4115-01A-01D-1252-08	56188039	66438012	114477248	23	16896											
SHROOM1	134549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132160478	132160478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	132160478	G	T	132160478	3	4	267	1	0	0	0	0	1	0	0	0	14306	1000	35	4	1508	4	SHROOM1	5	132160478	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	65722466	132160478	48754782	24	16897											
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	134002687	134002687	+	Splice_Site	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	134002687	G	A	134002687	5	1	267	1	0	0	0	0	0	0	1	0	14007	1275	44	2	750	2	SEC24A	5	134002687	Splice_Site	SNP	G	TCGA-B9-4115-01A-01D-1252-08	1842209	134002687	46912573	25	16898											
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu	37	5	136834142	136834142	+	Missense_Mutation	SNP	C	C	A	rs200001053	alternate_allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	136834142	C	A	136834142	3	1	267	1	0	0	0	0	1	0	0	0	15091	652	23	4	1253	4	SPOCK1	5	136834142	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	2831455	136834142	44081118	26	16899											
HIST1H2AD	3013	broad.mit.edu	37	6	26199108	26199109	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	26199109	CA	-	26199108	7	5	267	1	0	1	0	1	0	0	0	0	7138	835	29	0	32	0	HIST1H2AD	6	26199108	Frame_Shift_Del	DEL	CA	TCGA-B9-4115-01A-01D-1252-08		26199108	144915959	27	16900											
BTN3A2	11118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	26370805	26370805	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	26370805	A	-	26370805	7	5	267	1	0	1	0	1	0	0	0	0	1565	246	9	0	699	0	BTN3A2	6	26370805	Frame_Shift_Del	DEL	A	TCGA-B9-4115-01A-01D-1252-08	171697	26370805	144744262	28	16901											
KCNK17	89822	hgsc.bcm.edu	37	6	39282083	39282083	+	Missense_Mutation	SNP	C	C	T	rs139959421		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	39282083	C	T	39282083	3	4	267	1	0	0	0	0	1	0	0	0	8071	884	31	1	1136	1	KCNK17	6	39282083	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	12911278	39282083	131832984	29	16902											
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39313488	39313488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	39313488	G	T	39313488	3	4	267	1	0	0	0	0	1	0	0	0	8315	1348	47	4	147	4	KIF6	6	39313488	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	31405	39313488	131801579	30	16903											
NR2E1	7101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	108499383	108499383	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	108499383	T	G	108499383	3	3	267	1	0	0	0	0	1	0	0	0	10632	1609	56	5	598	5	NR2E1	6	108499383	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	69185895	108499383	62615684	31	16904											
FOXO3	2309	broad.mit.edu	37	6	108985136	108985136	+	Missense_Mutation	SNP	C	C	T	rs34223850		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	108985136	C	T	108985136	3	4	267	1	0	0	0	0	1	0	0	0	6031	594	21	2	1106	2	FOXO3	6	108985136	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	485753	108985136	62129931	32	16905											
TNRC18	84629	hgsc.bcm.edu	37	7	5415788	5415788	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	5415788	G	A	5415788	2	1	267	1	0	0	0	0	0	0	0	1	16351	1219	43	2		2	TNRC18	7	5415788	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08		5415788	153722875	33	16906											
DNAH11	8701	broad.mit.edu	37	7	21730436	21730436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	21730436	T	C	21730436	3	2	267	1	0	0	0	0	1	0	0	0	4601	1493	52	3	6138	3	DNAH11	7	21730436	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	16314648	21730436	137408227	34	16907											
TRIM74	378108	hgsc.bcm.edu	37	7	75028469	75028469	+	Silent	SNP	A	A	G	rs236633	by2hit2allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	75028469	A	G	75028469	2	3	267	1	0	0	0	0	0	0	0	1	16559	175	7	3		3	TRIM74	7	75028469	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	53298033	75028469	84110194	35	16908											
MAGI2	9863	broad.mit.edu	37	7	79082570	79082571	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	79082571	-	C	79082570	7	5	267	1	0	1	1	0	0	0	0	0	9198	1783	62	0	4388	0	MAGI2	7	79082570	Frame_Shift_Ins	INS	-	TCGA-B9-4115-01A-01D-1252-08	4054101	79082570	80056093	36	16909											
TFR2	7036	hgsc.bcm.edu	37	7	100224941	100224941	+	Silent	SNP	C	C	A	rs111760099		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	100224941	C	A	100224941	2	1	267	1	0	0	0	0	0	0	0	1	15823	610	22	4		4	TFR2	7	100224941	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	21142371	100224941	58913722	37	16910											
PODXL	5420	hgsc.bcm.edu	37	7	131241055	131241055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	131241055	A	G	131241055	3	3	267	1	0	0	0	0	1	0	0	0	12187	275	10	3	1648	3	PODXL	7	131241055	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	31016114	131241055	27897608	38	16911											
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	139299101	139299101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	139299101	T	C	139299101	3	2	267	1	0	0	0	0	1	0	0	0	7124	1725	60	3	1707	3	HIPK2	7	139299101	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	8058046	139299101	19839562	39	16912											
WDR86	349136	hgsc.bcm.edu	37	7	151078735	151078735	+	Missense_Mutation	SNP	A	A	G	rs4141455		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	151078735	A	G	151078735	3	3	267	1	0	0	0	0	1	0	0	0	17346	217	8	3	70	3	WDR86	7	151078735	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	11779634	151078735	8059928	40	16913											
KCNU1	157855	broad.mit.edu	37	8	36698474	36698474	+	Silent	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	36698474	C	A	36698474	2	1	267	1	0	0	0	0	0	0	0	1	8100	842	30	4		4	KCNU1	8	36698474	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08		36698474	109665548	41	16914											
ERMP1	79956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	5801231	5801231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	5801231	A	T	5801231	3	4	267	1	0	0	0	0	1	0	0	0	5238	14	1	5	722	5	ERMP1	9	5801231	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08		5801231	135412200	42	16915											
TYRP1	7306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	12694339	12694339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	12694339	C	G	12694339	3	3	267	1	0	0	0	0	1	0	0	0	16828	855	30	4	345	4	TYRP1	9	12694339	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	6893108	12694339	128519092	43	16916											
UNC13B	10497	hgsc.bcm.edu	37	9	35243362	35243362	+	Splice_Site	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	35243362	G	C	35243362	5	2	267	1	0	0	0	0	0	0	1	0	16997	1275	44	4	491	4	UNC13B	9	35243362	Splice_Site	SNP	G	TCGA-B9-4115-01A-01D-1252-08	22549023	35243362	105970069	44	16917											
KIF12	113220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116859620	116859620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	116859620	A	T	116859620	3	4	267	1	0	0	0	0	1	0	0	0	8280	101	4	5	1400	5	KIF12	9	116859620	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	81616258	116859620	24353811	45	16918											
COL27A1	85301	hgsc.bcm.edu	37	9	117052533	117052533	+	Silent	SNP	C	C	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	117052533	C	G	117052533	2	3	267	1	0	0	0	0	0	0	0	1	3687	755	27	4		4	COL27A1	9	117052533	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	192913	117052533	24160898	46	16919											
CEL	1056	hgsc.bcm.edu	37	9	135947023	135947023	+	Missense_Mutation	SNP	G	G	C	rs75294797	alternate_allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	135947023	G	C	135947023	3	2	267	1	0	0	0	0	1	0	0	0	3211	1087	38	4	2185	4	CEL	9	135947023	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	18894490	135947023	5266408	47	16920											
PTEN	5728	broad.mit.edu	37	10	89624275	89624275	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	89624275	C	T	89624275	4	4	267	1	0	0	0	0	0	1	0	0	12748	827	29	2	51	2	PTEN	10	89624275	Nonsense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08		89624275	45910472	48	16921											
METTL10	399818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	126477651	126477651	+	Silent	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	126477651	A	G	126477651	2	3	267	1	0	0	0	0	0	0	0	1	9501	117	5	3		3	METTL10	10	126477651	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	36853376	126477651	9057096	49	16922											
OSBPL5	114879	hgsc.bcm.edu;broad.mit.edu	37	11	3143300	3143300	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	3143300	T	-	3143300	7	5	267	1	0	1	0	1	0	0	0	0	11287	1609	56	0	2382	0	OSBPL5	11	3143300	Frame_Shift_Del	DEL	T	TCGA-B9-4115-01A-01D-1252-08		3143300	131863216	50	16923											
TRIM3	10612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6486812	6486812	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	6486812	C	T	6486812	2	4	267	1	0	0	0	0	0	0	0	1	16516	697	25	2		2	TRIM3	11	6486812	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	3343512	6486812	128519704	51	16924											
FJX1	24147	hgsc.bcm.edu	37	11	35641295	35641295	+	Missense_Mutation	SNP	A	A	G	rs202089278		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	35641295	A	G	35641295	3	3	267	1	0	0	0	0	1	0	0	0	5908	275	10	3	1113	3	FJX1	11	35641295	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	29154483	35641295	99365221	52	16925											
TTC17	55761	hgsc.bcm.edu	37	11	43436151	43436151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	43436151	T	G	43436151	3	3	267	1	0	0	0	0	1	0	0	0	16696	1838	64	5	2138	5	TTC17	11	43436151	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	7794856	43436151	91570365	53	16926											
ZBTB3	79842	broad.mit.edu	37	11	62519739	62519739	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	62519739	G	A	62519739	2	1	267	1	0	0	0	0	0	0	0	1	17546	1256	44	2		2	ZBTB3	11	62519739	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	19083588	62519739	72486777	54	16927											
OTUB1	55611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63756155	63756155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	63756155	G	T	63756155	3	4	267	1	0	0	0	0	1	0	0	0	11318	962	34	4	160	4	OTUB1	11	63756155	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	1236416	63756155	71250361	55	16928											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133814179	133814179	+	Silent	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	133814179	C	A	133814179	2	1	267	1	0	0	0	0	0	0	0	1	7613	697	25	4		4	IGSF9B	11	133814179	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	70058024	133814179	1192337	56	16929											
PRB2	653247	broad.mit.edu	37	12	11546691	11546692	+	In_Frame_Ins	INS	-	-	TTG	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	TTG	11546692	-	TTG	11546691	7	5	267	1	0	1	1	0	0	0	0	0	12453	564	20	0	933	0	PRB2	12	11546691	In_Frame_Ins	INS	-	TCGA-B9-4115-01A-01D-1252-08		11546691	122305204	57	16930											
ITGB7	3695	broad.mit.edu	37	12	53587039	53587039	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	53587039	G	A	53587039	2	1	267	1	0	0	0	0	0	0	0	1	7907	1311	46	2		2	ITGB7	12	53587039	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	42040348	53587039	80264856	58	16931											
CEP290	80184	broad.mit.edu	37	12	88524957	88524957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	88524957	G	T	88524957	3	4	267	1	0	0	0	0	1	0	0	0	3255	1310	46	4	7151	4	CEP290	12	88524957	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	34937918	88524957	45326938	59	16932											
DGKH	160851	hgsc.bcm.edu	37	13	42740683	42740683	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	42740683	A	C	42740683	3	2	267	1	0	0	0	0	1	0	0	0	4472	420	15	5	1025	5	DGKH	13	42740683	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08		42740683	72429195	60	16933											
DOCK9	23348	broad.mit.edu	37	13	99481713	99481713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	99481713	T	C	99481713	3	2	267	1	0	0	0	0	1	0	0	0	4696	1696	59	3	1514	3	DOCK9	13	99481713	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	56741030	99481713	15688165	61	16934											
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113516824	113516825	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	AG	113516825	GC	AG	113516824	3	1	267	1	0	0	0	0	1	0	0	0	1119	1087	38	1	3024	1	ATP11A	13	113516824	Missense_Mutation	DNP	GC	TCGA-B9-4115-01A-01D-1252-08	14035111	113516824	1653054	62	16935											
PPM1A	5494	broad.mit.edu	37	14	60749544	60749544	+	Silent	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	60749544	G	T	60749544	2	4	267	1	0	0	0	0	0	0	0	1	12345	1103	39	4		4	PPM1A	14	60749544	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08		60749544	46599996	63	16936											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	68282659	68282659	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	68282659	C	A	68282659	4	1	267	1	0	0	0	0	0	1	0	0	17680	922	32	4	7761	4	ZFYVE26	14	68282659	Nonsense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	7533115	68282659	39066881	64	16937											
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95556880	95556880	+	Silent	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	95556880	G	T	95556880	2	4	267	1	0	0	0	0	0	0	0	1	4523	1219	43	4		4	DICER1	14	95556880	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	27274221	95556880	11792660	65	16938											
SIVA1	10572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105222013	105222013	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	105222013	C	T	105222013	2	4	267	1	0	0	0	0	0	0	0	1	14358	506	18	2		2	SIVA1	14	105222013	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	9665133	105222013	2127527	66	16939											
TP53BP1	7158	broad.mit.edu	37	15	43733777	43733777	+	Silent	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	43733777	A	G	43733777	2	3	267	1	0	0	0	0	0	0	0	1	16395	175	7	3		3	TP53BP1	15	43733777	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08		43733777	58797615	67	16940											
FSD2	123722	broad.mit.edu	37	15	83437762	83437764	+	In_Frame_Del	DEL	TAA	TAA	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	TAA	TAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	83437764	TAA	-	83437762	7	5	267	1	0	1	0	1	0	0	0	0	6078	1763	61	0	846	0	FSD2	15	83437762	In_Frame_Del	DEL	TAA	TCGA-B9-4115-01A-01D-1252-08	39703985	83437762	19093630	68	16941											
ACAN	176	hgsc.bcm.edu	37	15	89399908	89399908	+	Silent	SNP	T	T	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	89399908	T	C	89399908	2	2	267	1	0	0	0	0	0	0	0	1	117	1567	55	3		3	ACAN	15	89399908	Silent	SNP	T	TCGA-B9-4115-01A-01D-1252-08	5962146	89399908	13131484	69	16942											
CACNA1H	8912	hgsc.bcm.edu	37	16	1251875	1251875	+	Silent	SNP	C	C	T	rs60537026	bycluster	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	1251875	C	T	1251875	2	4	267	1	0	0	0	0	0	0	0	1	2547	796	28	2		2	CACNA1H	16	1251875	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08		1251875	89102878	70	16943											
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	15716936	15716936	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	15716936	A	-	15716936	7	5	267	1	0	1	0	1	0	0	0	0	8184	246	9	0	2981	0	KIAA0430	16	15716936	Frame_Shift_Del	DEL	A	TCGA-B9-4115-01A-01D-1252-08	14465061	15716936	74637817	71	16944											
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19498328	19498328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	19498328	T	G	19498328	3	3	267	1	0	0	0	0	1	0	0	0	16000	1725	60	5	2793	5	TMC5	16	19498328	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	3781392	19498328	70856425	72	16945											
CCDC102A	92922	hgsc.bcm.edu;broad.mit.edu	37	16	57562850	57562850	+	Silent	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	57562850	C	A	57562850	2	1	267	1	0	0	0	0	0	0	0	1	2738	581	21	4		4	CCDC102A	16	57562850	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	38064522	57562850	32791903	73	16946											
TNFSF12-TNFSF13	407977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7464141	7464141	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	7464141	G	A	7464141	2	1	267	1	0	0	0	0	0	0	0	1	16316	1277	45	2		2	TNFSF12-TNFSF13	17	7464141	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08		7464141	73731069	74	16947											
CNTNAP1	8506	hgsc.bcm.edu;broad.mit.edu	37	17	40843435	40843435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	40843435	C	A	40843435	3	1	267	1	0	0	0	0	1	0	0	0	3648	506	18	4	2308	4	CNTNAP1	17	40843435	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	33379294	40843435	40351775	75	16948											
QRICH2	84074	hgsc.bcm.edu	37	17	74288976	74288976	+	Missense_Mutation	SNP	G	G	A	rs75054966		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	74288976	G	A	74288976	3	1	267	1	0	0	0	0	1	0	0	0	12893	1203	42	2	3721	2	QRICH2	17	74288976	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	33445541	74288976	6906234	76	16949											
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	13049324	13049324	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	13049324	T	-	13049324	7	5	267	1	0	1	0	1	0	0	0	0	3253	1725	60	0	2592	0	CEP192	18	13049324	Frame_Shift_Del	DEL	T	TCGA-B9-4115-01A-01D-1252-08		13049324	65027924	77	16950											
COX7A1	1346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36642400	36642402	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	-	36642402	TGT	-	36642400	7	5	267	1	0	1	0	1	0	0	0	0	3781	1464	51	0	96	0	COX7A1	19	36642400	In_Frame_Del	DEL	TGT	TCGA-B9-4115-01A-01D-1252-08		36642400	22486583	78	16951											
ITPKC	80271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41223385	41223385	+	Silent	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	41223385	A	T	41223385	2	4	267	1	0	0	0	0	0	0	0	1	7926	175	7	5		5	ITPKC	19	41223385	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	4580985	41223385	17905598	79	16952											
ERF	2077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42752789	42752790	+	In_Frame_Ins	INS	-	-	AAA	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	AAA	42752790	-	AAA	42752789	7	5	267	1	0	1	1	0	0	0	0	0	5223	478	17	0	175	0	ERF	19	42752789	In_Frame_Ins	INS	-	TCGA-B9-4115-01A-01D-1252-08	1529404	42752789	16376194	80	16953											
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	48945880	T	C	48945880	2	2	267	1	0	0	0	0	0	0	0	1	6789	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-B9-4115-01A-01D-1252-08	6193091	48945880	10183103	81	16954											
NTN5	126147	broad.mit.edu	37	19	49167945	49167945	+	Silent	SNP	A	A	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	49167945	A	C	49167945	2	2	267	1	0	0	0	0	0	0	0	1	10710	146	6	5		5	NTN5	19	49167945	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	222065	49167945	9961038	82	16955											
ALDH16A1	126133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49971767	49971767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	49971767	A	T	49971767	3	4	267	1	0	0	0	0	1	0	0	0	488	159	6	5	2126	5	ALDH16A1	19	49971767	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	803822	49971767	9157216	83	16956											
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58131703	58131703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	A	58131703	C	A	58131703	3	1	267	1	0	0	0	0	1	0	0	0	17736	506	18	4	222	4	ZNF134	19	58131703	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	8159936	58131703	997280	84	16957											
RIN2	54453	broad.mit.edu	37	20	19956190	19956190	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	19956190	C	T	19956190	2	4	267	1	0	0	0	0	0	0	0	1	13385	825	29	2		2	RIN2	20	19956190	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08		19956190	43069330	85	16958											
CBFA2T2	9139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32199022	32199022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	32199022	A	G	32199022	3	3	267	1	0	0	0	0	1	0	0	0	2699	159	6	3	376	3	CBFA2T2	20	32199022	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	12242832	32199022	30826498	86	16959											
SLC32A1	140679	broad.mit.edu	37	20	37356313	37356313	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	37356313	C	T	37356313	2	4	267	1	0	0	0	0	0	0	0	1	14578	726	26	2		2	SLC32A1	20	37356313	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	5157291	37356313	25669207	87	16960											
RFPL3	10738	broad.mit.edu	37	22	32756482	32756482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	32756482	A	G	32756482	3	3	267	1	0	0	0	0	1	0	0	0	13268	72	3	3	623	3	RFPL3	22	32756482	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08		32756482	18548084	88	16961											
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40061912	40061912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	G	40061912	T	G	40061912	3	3	267	1	0	0	0	0	1	0	0	0	2548	1673	58	5	4095	5	CACNA1I	22	40061912	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	7305430	40061912	11242654	89	16962											
GPR112	139378	hgsc.bcm.edu	37	X	135431434	135431434	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	C	135431434	A	C	135431434	3	2	267	1	0	0	0	0	1	0	0	0	6636	159	6	5	5579	5	GPR112	23	135431434	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08		135431434	19839126	90	16963											
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135594033	135594033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	T	135594033	A	T	135594033	3	4	267	1	0	0	0	0	1	0	0	0	7440	304	11	5	2163	5	HTATSF1	23	135594033	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	162599	135594033	19676527	91	16964											
CA6	765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	9009376	9009376	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	9009376	A	-	9009376	7	5	268	1	0	1	0	1	0	0	0	0	2523	188	7	0	140	0	CA6	1	9009376	Frame_Shift_Del	DEL	A	TCGA-B9-4116-01A-01D-1252-08		9009376	240241245	1	16965											
CLCN6	1185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	11888206	11888206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	11888206	G	A	11888206	3	1	268	1	0	0	0	0	1	0	0	0	3469	1145	40	1	936	1	CLCN6	1	11888206	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	2878830	11888206	237362415	2	16966											
PRAMEF19	645414	hgsc.bcm.edu	37	1	13474718	13474718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	13474718	T	G	13474718	3	3	268	1	0	0	0	0	1	0	0	0	12444	1812	63	5	32	5	PRAMEF19	1	13474718	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	1586512	13474718	235775903	3	16967											
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27943508	27943508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	27943508	G	A	27943508	3	1	268	1	0	0	0	0	1	0	0	0	5881	1174	41	2	1075	2	FGR	1	27943508	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	14468790	27943508	221307113	4	16968											
PABPC4	8761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	40038242	40038242	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	40038242	G	-	40038242	7	5	268	1	0	1	0	1	0	0	0	0	11373	1368	48	0	1828	0	PABPC4	1	40038242	Frame_Shift_Del	DEL	G	TCGA-B9-4116-01A-01D-1252-08	12094734	40038242	209212379	5	16969	225	2									
PABPC4	8761	hgsc.bcm.edu;bcgsc.ca	37	1	40038244	40038244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	40038244	C	A	40038244	3	1	268	1	0	0	0	0	1	0	0	0	11373	855	30	4	1830	4	PABPC4	1	40038244	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	2	40038244	209212377	6	16970	225	2									
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	164761796	164761796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	164761796	A	T	164761796	3	4	268	1	0	0	0	0	1	0	0	0	11499	217	8	5	341	5	PBX1	1	164761796	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	124723552	164761796	84488825	7	16971											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201039482	201039482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	201039482	G	A	201039482	3	1	268	1	0	0	0	0	1	0	0	0	2549	1174	41	2	3455	2	CACNA1S	1	201039482	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	36277686	201039482	48211139	8	16972											
EGLN1	54583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	231502192	231502192	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	231502192	T	A	231502192	4	1	268	1	0	0	0	0	0	1	0	0	4970	1763	61	5	38	5	EGLN1	1	231502192	Nonsense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	30462710	231502192	17748429	9	16973											
ZNF692	55657	broad.mit.edu	37	1	249150136	249150136	+	Silent	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	249150136	A	G	249150136	2	3	268	1	0	0	0	0	0	0	0	1	18109	175	7	3		3	ZNF692	1	249150136	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	17647944	249150136	100485	10	16974											
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	16086058	16086058	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	16086058	G	C	16086058	3	2	268	1	0	0	0	0	1	0	0	0	10028	1261	44	4	1240	4	MYCN	2	16086058	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08		16086058	227113315	11	16975											
EMILIN1	11117	hgsc.bcm.edu	37	2	27305348	27305348	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	27305348	C	T	27305348	2	4	268	1	0	0	0	0	0	0	0	1	5095	639	23	1		1	EMILIN1	2	27305348	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	11219290	27305348	215894025	12	16976											
LCLAT1	253558	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	30863165	30863173	+	In_Frame_Del	DEL	GAAGAGAAA	GAAGAGAAA	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GAAGAGAAA	GAAGAGAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	30863173	GAAGAGAAA	-	30863165	7	5	268	1	0	1	0	1	0	0	0	0	8684	1175	41	0	947	0	LCLAT1	2	30863165	In_Frame_Del	DEL	GAAGAGAAA	TCGA-B9-4116-01A-01D-1252-08	3557817	30863165	212336208	13	16977											
ANXA4	307	ucsc.edu	37	2	70037724	70037724	+	Splice_Site	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	70037724	A	G	70037724	5	3	268	1	0	0	0	0	0	0	1	0	720	434	15	3	418	3	ANXA4	2	70037724	Splice_Site	SNP	A	TCGA-B9-4116-01A-01D-1252-08	39174559	70037724	173161649	14	16978											
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	85769094	85769097	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	85769097	AAGT	-	85769094	7	5	268	1	0	1	0	1	0	0	0	0	9337	144	5	0	566	0	MAT2A	2	85769094	Frame_Shift_Del	DEL	AAGT	TCGA-B9-4116-01A-01D-1252-08	15731370	85769094	157430279	15	16979											
BAZ2B	29994	hgsc.bcm.edu	37	2	160287392	160287392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	160287392	T	G	160287392	3	3	268	1	0	0	0	0	1	0	0	0	1332	1638	57	5	4442	5	BAZ2B	2	160287392	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	74518298	160287392	82911981	16	16980											
C2orf80	389073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	209045533	209045533	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	209045533	A	C	209045533	3	2	268	1	0	0	0	0	1	0	0	0	2199	333	12	5	295	5	C2orf80	2	209045533	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	48758141	209045533	34153840	17	16981											
SP140	11262	hgsc.bcm.edu	37	2	231176275	231176275	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	231176275	C	G	231176275	3	3	268	1	0	0	0	0	1	0	0	0	14975	768	27	4	2689	4	SP140	2	231176275	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	22130742	231176275	12023098	18	16982											
SP140L	93349	hgsc.bcm.edu	37	2	231266487	231266487	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	231266487	C	G	231266487	3	3	268	1	0	0	0	0	1	0	0	0	14976	768	27	4	1679	4	SP140L	2	231266487	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	90212	231266487	11932886	19	16983											
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9793597	9793597	+	Missense_Mutation	SNP	A	A	G	rs144249605	byfrequency;alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	9793597	A	G	9793597	3	3	268	1	0	0	0	0	1	0	0	0	10852	159	6	3	539	3	OGG1	3	9793597	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08		9793597	188228833	20	16984											
MON1A	84315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49946456	49946456	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	49946456	G	A	49946456	2	1	268	1	0	0	0	0	0	0	0	1	9705	1277	45	2		2	MON1A	3	49946456	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	40152859	49946456	148075974	21	16985											
RPL29	6159	hgsc.bcm.edu	37	3	52027876	52027876	+	Silent	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	52027876	G	T	52027876	2	4	268	1	0	0	0	0	0	0	0	1	13591	1335	47	4		4	RPL29	3	52027876	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	2081420	52027876	145994554	22	16986											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69096707	69096707	+	Silent	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	69096707	T	C	69096707	2	2	268	1	0	0	0	0	0	0	0	1	16240	1451	51	3		3	TMF1	3	69096707	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08	17068831	69096707	128925723	23	16987											
GPR128	84873	hgsc.bcm.edu;broad.mit.edu	37	3	100349576	100349576	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	100349576	T	G	100349576	3	3	268	1	0	0	0	0	1	0	0	0	6648	1464	51	5	267	5	GPR128	3	100349576	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	31252869	100349576	97672854	24	16988											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101370247	101370247	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	101370247	T	G	101370247	3	3	268	1	0	0	0	0	1	0	0	0	17536	1606	56	5	240	5	ZBTB11	3	101370247	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	1020671	101370247	96652183	25	16989											
PVRL3	25945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	110830989	110830989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	110830989	G	A	110830989	4	1	268	1	0	0	0	0	0	1	0	0	12854	1241	43	2	279	2	PVRL3	3	110830989	Nonsense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	9460742	110830989	87191441	26	16990											
C3orf17	25871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	112736366	112736368	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	112736368	CAT	-	112736366	7	5	268	1	0	1	0	1	0	0	0	0	2212	478	17	0	1545	0	C3orf17	3	112736366	In_Frame_Del	DEL	CAT	TCGA-B9-4116-01A-01D-1252-08	1905377	112736366	85286064	27	16991											
PIGZ	80235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196675120	196675120	+	Silent	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	196675120	A	T	196675120	2	4	268	1	0	0	0	0	0	0	0	1	11912	117	5	5		5	PIGZ	3	196675120	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	83938754	196675120	1347310	28	16992											
GRK4	2868	broad.mit.edu	37	4	3039108	3039108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	3039108	C	T	3039108	3	4	268	1	0	0	0	0	1	0	0	0	6798	739	26	2	1469	2	GRK4	4	3039108	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08		3039108	188115168	29	16993											
RFC1	5981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39325032	39325032	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	39325032	C	T	39325032	2	4	268	1	0	0	0	0	0	0	0	1	13257	912	32	2		2	RFC1	4	39325032	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	36285924	39325032	151829244	30	16994											
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69968643	69968643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	69968643	A	T	69968643	3	4	268	1	0	0	0	0	1	0	0	0	16974	188	7	5	999	5	UGT2B7	4	69968643	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	30643611	69968643	121185633	31	16995											
SULT1E1	6783	hgsc.bcm.edu	37	4	70713508	70713508	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	70713508	G	C	70713508	3	2	268	1	0	0	0	0	1	0	0	0	15392	1174	41	4	397	4	SULT1E1	4	70713508	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	744865	70713508	120440768	32	16996											
ANTXR2	118429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	80992809	80992809	+	Splice_Site	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	80992809	C	A	80992809	5	1	268	1	0	0	0	0	0	0	1	0	712	695	24	4	1420	4	ANTXR2	4	80992809	Splice_Site	SNP	C	TCGA-B9-4116-01A-01D-1252-08	10279301	80992809	110161467	33	16997											
NPY2R	4887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156136059	156136059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	156136059	T	G	156136059	3	3	268	1	0	0	0	0	1	0	0	0	10616	1609	56	5	970	5	NPY2R	4	156136059	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	75143250	156136059	35018217	34	16998											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187549407	187549407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	187549407	C	A	187549407	3	1	268	1	0	0	0	0	1	0	0	0	5696	507	18	4	9131	4	FAT1	4	187549407	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	31413348	187549407	3604869	35	16999											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	26906161	26906161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	26906161	C	T	26906161	3	4	268	1	0	0	0	0	1	0	0	0	3119	913	32	2	1683	2	CDH9	5	26906161	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08		26906161	154009099	36	17000											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu	37	5	139908303	139908303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	139908303	G	C	139908303	3	2	268	1	0	0	0	0	1	0	0	0	628	1020	36	4	5992	4	ANKHD1	5	139908303	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	113002142	139908303	41006957	37	17001											
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu	37	5	140186954	140186954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	140186954	C	T	140186954	3	4	268	1	0	0	0	0	1	0	0	0	11533	652	23	1	184	1	PCDHA4	5	140186954	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	278651	140186954	40728306	38	17002											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu	37	5	140221088	140221088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	140221088	C	T	140221088	3	4	268	1	0	0	0	0	1	0	0	0	11537	652	23	1	184	1	PCDHA8	5	140221088	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	34134	140221088	40694172	39	17003											
MED7	9443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156565887	156565887	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	156565887	T	G	156565887	3	3	268	1	0	0	0	0	1	0	0	0	9459	1725	60	5	149	5	MED7	5	156565887	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	16344799	156565887	24349373	40	17004											
SLC25A27	9481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46630133	46630133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	46630133	T	C	46630133	3	2	268	1	0	0	0	0	1	0	0	0	14503	1464	51	3	418	3	SLC25A27	6	46630133	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08		46630133	124484934	41	17005											
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110757106	110757106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	110757106	G	A	110757106	3	1	268	1	0	0	0	0	1	0	0	0	14460	1319	46	2	375	2	SLC22A16	6	110757106	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	64126973	110757106	60357961	42	17006											
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	136709627	136709627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	136709627	G	A	136709627	3	1	268	1	0	0	0	0	1	0	0	0	9273	1144	40	1	1875	1	MAP7	6	136709627	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	25952521	136709627	34405440	43	17007											
SYNJ2	8871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	158449969	158449969	+	Silent	SNP	A	A	T	rs140060886	alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	158449969	A	T	158449969	2	4	268	1	0	0	0	0	0	0	0	1	15465	204	8	5		5	SYNJ2	6	158449969	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	21740342	158449969	12665098	44	17008											
DGKB	1607	broad.mit.edu	37	7	14712573	14712573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	14712573	G	T	14712573	3	4	268	1	0	0	0	0	1	0	0	0	4468	1377	48	4	1370	4	DGKB	7	14712573	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08		14712573	144426090	45	17009											
NOD1	10392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	30475651	30475651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	30475651	T	A	30475651	3	1	268	1	0	0	0	0	1	0	0	0	10523	1550	54	5	293	5	NOD1	7	30475651	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	15763078	30475651	128663012	46	17010											
EIF4H	7458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73601993	73601993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	73601993	A	G	73601993	3	3	268	1	0	0	0	0	1	0	0	0	5041	159	6	3	118	3	EIF4H	7	73601993	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	43126342	73601993	85536670	47	17011											
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	75615481	75615481	+	Missense_Mutation	SNP	A	A	G	rs72557954		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	75615481	A	G	75615481	3	3	268	1	0	0	0	0	1	0	0	0	12264	391	14	3	1874	3	POR	7	75615481	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	2013488	75615481	83523182	48	17012											
BAIAP2L1	55971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	97933661	97933661	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	97933661	G	A	97933661	2	1	268	1	0	0	0	0	0	0	0	1	1302	1103	39	1		1	BAIAP2L1	7	97933661	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	22318180	97933661	61205002	49	17013											
POLR2J	5439	hgsc.bcm.edu;broad.mit.edu	37	7	102119282	102119282	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	102119282	G	C	102119282	3	2	268	1	0	0	0	0	1	0	0	0	12230	1059	37	4	343	4	POLR2J	7	102119282	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	4185621	102119282	57019381	50	17014											
ANKRD7	56311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117879989	117879989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	117879989	C	A	117879989	3	1	268	1	0	0	0	0	1	0	0	0	686	594	21	4	761	4	ANKRD7	7	117879989	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	15760707	117879989	41258674	51	17015											
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	131241029	G	C	131241029	2	2	268	1	0	0	0	0	0	0	0	1	12187	987	35	4		4	PODXL	7	131241029	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	13361040	131241029	27897634	52	17016											
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151262972	151262972	+	Splice_Site	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	151262972	C	T	151262972	5	4	268	1	0	0	0	0	0	0	1	0	12511	927	32	2	496	2	PRKAG2	7	151262972	Splice_Site	SNP	C	TCGA-B9-4116-01A-01D-1252-08	20021943	151262972	7875691	53	17017											
SGCZ	137868	hgsc.bcm.edu	37	8	13948004	13948004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	13948004	G	C	13948004	3	2	268	1	0	0	0	0	1	0	0	0	14217	1319	46	4	55	4	SGCZ	8	13948004	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08		13948004	132416018	54	17018											
FAM84B	157638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	127569250	127569250	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	127569250	G	C	127569250	3	2	268	1	0	0	0	0	1	0	0	0	5649	1299	45	4	551	4	FAM84B	8	127569250	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	113621246	127569250	18794772	55	17019											
NAPRT1	93100	hgsc.bcm.edu	37	8	144660318	144660318	+	Silent	SNP	G	G	T	rs896951		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	144660318	G	T	144660318	2	4	268	1	0	0	0	0	0	0	0	1	10172	1103	39	4		4	NAPRT1	8	144660318	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	17091068	144660318	1703704	56	17020											
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	134010301	134010301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	134010301	A	T	134010301	3	4	268	1	0	0	0	0	1	0	0	0	10769	159	6	5	878	5	NUP214	9	134010301	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08		134010301	7203130	57	17021											
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139369195	139369195	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	139369195	G	-	139369195	7	5	268	1	0	1	0	1	0	0	0	0	13999	1000	35	0	4320	0	SEC16A	9	139369195	Frame_Shift_Del	DEL	G	TCGA-B9-4116-01A-01D-1252-08	5358894	139369195	1844236	58	17022											
ABI1	10006	hgsc.bcm.edu	37	10	27040641	27040641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	27040641	G	C	27040641	3	2	268	1	0	0	0	0	1	0	0	0	88	1174	41	4	297	4	ABI1	10	27040641	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08		27040641	108494106	59	17023											
PGAM1	5223	hgsc.bcm.edu	37	10	99192203	99192203	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	99192203	C	T	99192203	2	4	268	1	0	0	0	0	0	0	0	1	11780	581	21	2		2	PGAM1	10	99192203	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	72151562	99192203	36342544	60	17024											
FAM45A	404636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	120879873	120879873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	120879873	A	T	120879873	3	4	268	1	0	0	0	0	1	0	0	0	5571	101	4	5	520	5	FAM45A	10	120879873	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	21687670	120879873	14654874	61	17025											
FANK1	92565	broad.mit.edu	37	10	127585218	127585218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	127585218	C	A	127585218	3	1	268	1	0	0	0	0	1	0	0	0	5679	739	26	4	9	4	FANK1	10	127585218	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	6705345	127585218	7949529	62	17026											
MICAL2	9645	ucsc.edu	37	11	12225946	12225946	+	Silent	SNP	G	G	A	rs3763823	byfrequency;alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	12225946	G	A	12225946	2	1	268	1	0	0	0	0	0	0	0	1	9577	1683	59	5		5	MICAL2	11	12225946	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08		12225946	122780570	63	17027											
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	40136626	40136630	+	Frame_Shift_Del	DEL	AGCAC	AGCAC	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	AGCAC	AGCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	40136630	AGCAC	-	40136626	7	5	268	1	0	1	0	1	0	0	0	0	9015	304	11	0	709	0	LRRC4C	11	40136626	Frame_Shift_Del	DEL	AGCAC	TCGA-B9-4116-01A-01D-1252-08	27910680	40136626	94869890	64	17028											
TRIM48	79097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55032729	55032729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	55032729	G	T	55032729	3	4	268	1	0	0	0	0	1	0	0	0	16535	971	34	4	404	4	TRIM48	11	55032729	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	14896103	55032729	79973787	65	17029											
COX8A	1351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63743765	63743765	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	63743765	C	G	63743765	3	3	268	1	0	0	0	0	1	0	0	0	3787	506	18	4	189	4	COX8A	11	63743765	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	8711036	63743765	71262751	66	17030											
SCYL1	57410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	65305494	65305494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	65305494	G	A	65305494	4	1	268	1	0	0	0	0	0	1	0	0	13960	1241	43	2	2150	2	SCYL1	11	65305494	Nonsense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	1561729	65305494	69701022	67	17031											
FGF3	2248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	69625463	69625464	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	69625464	-	T	69625463	7	5	268	1	0	1	1	0	0	0	0	0	5860	1020	36	0	393	0	FGF3	11	69625463	Frame_Shift_Ins	INS	-	TCGA-B9-4116-01A-01D-1252-08	4319969	69625463	65381053	68	17032	226	2									
FGF3	2248	hgsc.bcm.edu;bcgsc.ca	37	11	69625465	69625465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	69625465	G	T	69625465	3	4	268	1	0	0	0	0	1	0	0	0	5860	1319	46	4	395	4	FGF3	11	69625465	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	2	69625465	65381051	69	17033	226	2									
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133805658	133805658	+	Splice_Site	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	133805658	C	T	133805658	5	4	268	1	0	0	0	0	0	0	1	0	7613	811	28	2	3280	2	IGSF9B	11	133805658	Splice_Site	SNP	C	TCGA-B9-4116-01A-01D-1252-08	64180193	133805658	1200858	70	17034											
CACNA1C	775	broad.mit.edu	37	12	2794927	2794927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	2794927	C	T	2794927	3	4	268	1	0	0	0	0	1	0	0	0	2542	875	31	1	6482	1	CACNA1C	12	2794927	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08		2794927	131056968	71	17035											
CLEC4D	338339	broad.mit.edu;bcgsc.ca	37	12	8667926	8667932	+	Splice_Site	DEL	TAAGTTA	TAAGTTA	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	TAAGTTA	TAAGTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	8667932	TAAGTTA	-	8667926	8	5	268	1	0	1	0	1	0	0	1	0	3516	1652	57	0	129	0	CLEC4D	12	8667926	Splice_Site	DEL	TAAGTTA	TCGA-B9-4116-01A-01D-1252-08	5872999	8667926	125183969	72	17036											
MFSD5	84975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53647275	53647275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	53647275	T	G	53647275	3	3	268	1	0	0	0	0	1	0	0	0	9541	1609	56	5	983	5	MFSD5	12	53647275	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	44979349	53647275	80204620	73	17037											
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56096870	56096870	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	56096870	T	-	56096870	7	5	268	1	0	1	0	1	0	0	0	0	7888	1551	54	0	3388	0	ITGA7	12	56096870	Frame_Shift_Del	DEL	T	TCGA-B9-4116-01A-01D-1252-08	2449595	56096870	77755025	74	17038											
SMARCC2	6601	broad.mit.edu;bcgsc.ca	37	12	56559482	56559482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	56559482	A	G	56559482	3	3	268	1	0	0	0	0	1	0	0	0	14789	202	7	3	897	3	SMARCC2	12	56559482	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	462612	56559482	77292413	75	17039											
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	81661720	81661720	+	Silent	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	81661720	A	G	81661720	2	3	268	1	0	0	0	0	0	0	0	1	12317	98	4	3		3	PPFIA2	12	81661720	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	25102238	81661720	52190175	76	17040											
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	105512257	105512259	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	105512259	GTG	-	105512257	7	5	268	1	0	1	0	1	0	0	0	0	8213	1029	36	0	495	0	KIAA1033	12	105512257	In_Frame_Del	DEL	GTG	TCGA-B9-4116-01A-01D-1252-08	23850537	105512257	28339638	77	17041											
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111963052	111963052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	111963052	A	G	111963052	3	3	268	1	0	0	0	0	1	0	0	0	1211	188	7	3	2901	3	ATXN2	12	111963052	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	6450795	111963052	21888843	78	17042											
ZNF10	7556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	133732280	133732280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	133732280	G	C	133732280	3	2	268	1	0	0	0	0	1	0	0	0	17724	1029	36	4	462	4	ZNF10	12	133732280	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	21769228	133732280	119615	79	17043											
IL17D	53342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21295994	21295994	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	21295994	C	T	21295994	2	4	268	1	0	0	0	0	0	0	0	1	7644	842	30	2		2	IL17D	13	21295994	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08		21295994	93873884	80	17044											
TCL1B	9623	ucsc.edu	37	14	96157639	96157639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	96157639	A	G	96157639	3	3	268	1	0	0	0	0	1	0	0	0	15717	188	7	3	378	3	TCL1B	14	96157639	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08		96157639	11191901	81	17045											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu	37	15	51285604	51285604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	51285604	T	G	51285604	3	3	268	1	0	0	0	0	1	0	0	0	752	1696	59	5	2194	5	AP4E1	15	51285604	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08		51285604	51245788	82	17046											
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	99465632	99465632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	99465632	C	A	99465632	3	1	268	1	0	0	0	0	1	0	0	0	7578	564	20	4	2499	4	IGF1R	15	99465632	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	48180028	99465632	3065760	83	17047											
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14346228	14346228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	14346228	T	G	14346228	3	3	268	1	0	0	0	0	1	0	0	0	9609	1783	62	5	2472	5	MKL2	16	14346228	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08		14346228	76008525	84	17048											
BFAR	51283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14755800	14755800	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	14755800	C	G	14755800	3	3	268	1	0	0	0	0	1	0	0	0	1414	623	22	4	853	4	BFAR	16	14755800	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	409572	14755800	75598953	85	17049											
SMG1	23049	broad.mit.edu;ucsc.edu	37	16	18851234	18851234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	18851234	C	T	18851234	3	4	268	1	0	0	0	0	1	0	0	0	14808	855	30	2	4342	2	SMG1	16	18851234	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	4095434	18851234	71503519	86	17050											
GPRC5B	51704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19884048	19884048	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	19884048	G	A	19884048	2	1	268	1	0	0	0	0	0	0	0	1	6732	1252	44	2		2	GPRC5B	16	19884048	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	1032814	19884048	70470705	87	17051											
BCL7C	9274	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	30899187	30899187	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	30899187	C	T	30899187	2	4	268	1	0	0	0	0	0	0	0	1	1380	837	29	2		2	BCL7C	16	30899187	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	11015139	30899187	59455566	88	17052											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	49671278	49671278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	49671278	G	T	49671278	3	4	268	1	0	0	0	0	1	0	0	0	17910	1368	48	4	2089	4	ZNF423	16	49671278	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	18772091	49671278	40683475	89	17053											
IRX3	79191	hgsc.bcm.edu	37	16	54317587	54317598	+	Frame_Shift_Del	DEL	TTTTTAAAGAAC	TTTTTAAAGAAC	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	TTTTTAAAGAAC	TTTTTAAAGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	54317598	TTTTTAAAGAAC	-	54317587	7	5	268	1	0	1	0	1	0	0	0	0	7852	1856	64	0		0	IRX3	16	54317587	Frame_Shift_Del	DEL	TTTTTAAAGAAC	TCGA-B9-4116-01A-01D-1252-08	4646309	54317587	36037166	90	17054											
BBS2	583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56531663	56531663	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	56531663	G	A	56531663	2	1	268	1	0	0	0	0	0	0	0	1	1338	962	34	2		2	BBS2	16	56531663	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	2214076	56531663	33823090	91	17055											
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88653023	88653023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	88653023	G	T	88653023	4	4	268	1	0	0	0	0	0	1	0	0	17580	943	33	4	625	4	ZC3H18	16	88653023	Nonsense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	32121360	88653023	1701730	92	17056											
MINK1	50488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4800540	4800540	+	Silent	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	4800540	T	G	4800540	2	3	268	1	0	0	0	0	0	0	0	1	9594	1828	64	5		5	MINK1	17	4800540	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08		4800540	76394670	93	17057											
SLC16A13	201232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6942168	6942169	+	In_Frame_Ins	INS	-	-	ATA	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	ATA	6942169	-	ATA	6942168	7	5	268	1	0	1	1	0	0	0	0	0	14419	1290	45	0	1051	0	SLC16A13	17	6942168	In_Frame_Ins	INS	-	TCGA-B9-4116-01A-01D-1252-08	2141628	6942168	74253042	94	17058											
YBX2	51087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7193332	7193332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	7193332	C	A	7193332	3	1	268	1	0	0	0	0	1	0	0	0	17482	855	30	4	303	4	YBX2	17	7193332	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	251164	7193332	74001878	95	17059											
SPEM1	374768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7324267	7324267	+	Silent	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	7324267	C	A	7324267	2	1	268	1	0	0	0	0	0	0	0	1	15049	842	30	4		4	SPEM1	17	7324267	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	130935	7324267	73870943	96	17060											
GUCY2D	3000	hgsc.bcm.edu;broad.mit.edu	37	17	7919305	7919305	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	7919305	A	C	7919305	3	2	268	1	0	0	0	0	1	0	0	0	6904	391	14	5	3166	5	GUCY2D	17	7919305	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	595038	7919305	73275905	97	17061											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15964734	15964734	+	Silent	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	15964734	A	G	15964734	2	3	268	1	0	0	0	0	0	0	0	1	10242	40	2	3		3	NCOR1	17	15964734	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	8045429	15964734	65230476	98	17062											
MAPK7	5598	hgsc.bcm.edu	37	17	19285267	19285267	+	Missense_Mutation	SNP	C	C	T	rs144954037		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	19285267	C	T	19285267	3	4	268	1	0	0	0	0	1	0	0	0	9289	623	22	2	1665	2	MAPK7	17	19285267	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	3320533	19285267	61909943	99	17063											
PLEKHH3	79990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40821477	40821477	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	40821477	C	A	40821477	4	1	268	1	0	0	0	0	0	1	0	0	12085	922	32	4	213	4	PLEKHH3	17	40821477	Nonsense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	21536210	40821477	40373733	100	17064											
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42289718	42289718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	42289718	C	G	42289718	3	3	268	1	0	0	0	0	1	0	0	0	16921	564	20	4	1585	4	UBTF	17	42289718	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	1468241	42289718	38905492	101	17065											
MEX3D	399664	hgsc.bcm.edu	37	19	1555892	1555892	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	1555892	G	A	1555892	2	1	268	1	0	0	0	0	0	0	0	1	9519	987	35	2		2	MEX3D	19	1555892	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08		1555892	57573091	102	17066											
GNA11	2767	hgsc.bcm.edu	37	19	3110145	3110145	+	Splice_Site	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	3110145	A	C	3110145	5	2	268	1	0	0	0	0	0	0	1	0	6506	202	7	5	141	5	GNA11	19	3110145	Splice_Site	SNP	A	TCGA-B9-4116-01A-01D-1252-08	1554253	3110145	56018838	103	17067											
TIMM44	10469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8002997	8002997	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	8002997	T	A	8002997	3	1	268	1	0	0	0	0	1	0	0	0	15924	1783	62	5	1175	5	TIMM44	19	8002997	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	4892852	8002997	51125986	104	17068											
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8468330	8468331	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	8468331	CA	-	8468330	7	5	268	1	0	1	0	1	0	0	0	0	12905	710	25	0	563	0	RAB11B	19	8468330	Frame_Shift_Del	DEL	CA	TCGA-B9-4116-01A-01D-1252-08	465333	8468330	50660653	105	17069											
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9362275	9362275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	9362275	T	G	9362275	3	3	268	1	0	0	0	0	1	0	0	0	11228	1580	55	5	558	5	OR7E24	19	9362275	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	893945	9362275	49766708	106	17070											
RDH8	50700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10132218	10132218	+	Silent	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	10132218	C	A	10132218	2	1	268	1	0	0	0	0	0	0	0	1	13209	813	29	4		4	RDH8	19	10132218	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	769943	10132218	48996765	107	17071											
DOCK6	57572	broad.mit.edu	37	19	11324999	11325018	+	Frame_Shift_Del	DEL	GGCACTCTGGGCACTGCCCA	GGCACTCTGGGCACTGCCCA	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GGCACTCTGGGCACTGCCCA	GGCACTCTGGGCACTGCCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	11325018	GGCACTCTGGGCACTGCCCA	-	11324999	7	5	268	1	0	1	0	1	0	0	0	0	4693	1219	43	0	1913	0	DOCK6	19	11324999	Frame_Shift_Del	DEL	GGCACTCTGGGCACTGCCCA	TCGA-B9-4116-01A-01D-1252-08	1192781	11324999	47803984	108	17072											
C19orf44	84167	ucsc.edu	37	19	16612294	16612294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	16612294	G	A	16612294	3	1	268	1	0	0	0	0	1	0	0	0	1929	943	33	2	693	2	C19orf44	19	16612294	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	5287295	16612294	42516689	109	17073											
UPF1	5976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18963808	18963808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	18963808	A	G	18963808	3	3	268	1	0	0	0	0	1	0	0	0	17015	217	8	3	1011	3	UPF1	19	18963808	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	2351514	18963808	40165175	110	17074											
SARS2	54938	broad.mit.edu	37	19	39412717	39412717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	39412717	A	T	39412717	3	4	268	1	0	0	0	0	1	0	0	0	13858	173	6	5	1294	5	SARS2	19	39412717	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	20448909	39412717	19716266	111	17075											
HSD17B14	51171	hgsc.bcm.edu;broad.mit.edu	37	19	49316535	49316535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	49316535	A	C	49316535	3	2	268	1	0	0	0	0	1	0	0	0	7390	246	9	5	106	5	HSD17B14	19	49316535	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	9903818	49316535	9812448	112	17076											
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	5903027	5903027	+	Silent	SNP	A	A	G	rs199738388		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	5903027	A	G	5903027	2	3	268	1	0	0	0	0	0	0	0	1	3341	117	5	3		3	CHGB	20	5903027	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08		5903027	57122493	113	17077											
NKX2-4	644524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	21376576	21376576	+	Silent	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	21376576	G	T	21376576	2	4	268	1	0	0	0	0	0	0	0	1	10459	1335	47	4		4	NKX2-4	20	21376576	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	15473549	21376576	41648944	114	17078											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34091451	34091451	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	-	34091451	A	-	34091451	7	5	268	1	0	1	0	1	0	0	0	0	3254	131	5	0	5360	0	CEP250	20	34091451	Frame_Shift_Del	DEL	A	TCGA-B9-4116-01A-01D-1252-08	12714875	34091451	28934069	115	17079											
ACTR5	79913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37400319	37400319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	37400319	G	C	37400319	3	2	268	1	0	0	0	0	1	0	0	0	215	1001	35	4	1718	4	ACTR5	20	37400319	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	3308868	37400319	25625201	116	17080											
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47864026	47864027	+	Missense_Mutation	DNP	GT	GT	AG	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	AG	47864027	GT	AG	47864026	3	1	268	1	0	0	0	0	1	0	0	0	18217	1020	36	2	225	2	ZNFX1	20	47864026	Missense_Mutation	DNP	GT	TCGA-B9-4116-01A-01D-1252-08	10463707	47864026	15161494	117	17081											
YTHDF1	54915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61833792	61833792	+	Silent	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	61833792	T	C	61833792	2	2	268	1	0	0	0	0	0	0	0	1	17510	1722	60	3		3	YTHDF1	20	61833792	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08	13969766	61833792	1191728	118	17082											
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43221789	43221789	+	Missense_Mutation	SNP	C	C	G	rs139717863	alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	43221789	C	G	43221789	3	3	268	1	0	0	0	0	1	0	0	0	12466	768	27	4	392	4	PRDM15	21	43221789	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08		43221789	4908106	119	17083											
COL18A1	80781	hgsc.bcm.edu	37	21	46925137	46925137	+	Silent	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	46925137	T	C	46925137	2	2	268	1	0	0	0	0	0	0	0	1	3677	1538	54	3		3	COL18A1	21	46925137	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08	3703348	46925137	1204758	120	17084											
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18028580	18028580	+	Silent	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	18028580	T	A	18028580	2	1	268	1	0	0	0	0	0	0	0	1	3208	1596	56	5		5	CECR2	22	18028580	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08		18028580	33275986	121	17085											
RGL4	266747	hgsc.bcm.edu;broad.mit.edu	37	22	24041048	24041048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	24041048	A	T	24041048	3	4	268	1	0	0	0	0	1	0	0	0	13292	188	7	5	1442	5	RGL4	22	24041048	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	6012468	24041048	27263518	122	17086											
MKL1	57591	hgsc.bcm.edu	37	22	40814737	40814737	+	Missense_Mutation	SNP	C	C	T	rs144888766		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	40814737	C	T	40814737	3	4	268	1	0	0	0	0	1	0	0	0	9608	768	27	1	1106	1	MKL1	22	40814737	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	16773689	40814737	10489829	123	17087											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41572951	41572951	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	A	41572951	T	A	41572951	3	1	268	1	0	0	0	0	1	0	0	0	5150	1812	63	5	5358	5	EP300	22	41572951	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	758214	41572951	9731615	124	17088											
ZRSR2	8233	hgsc.bcm.edu	37	X	15841260	15841260	+	Silent	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	G	15841260	C	G	15841260	2	3	268	1	0	0	0	0	0	0	0	1	18237	697	25	4		4	ZRSR2	23	15841260	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08		15841260	139429300	125	17089											
SHROOM4	57477	hgsc.bcm.edu	37	X	50350752	50350752	+	Silent	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	50350752	T	C	50350752	2	2	268	1	0	0	0	0	0	0	0	1	14309	1722	60	3		3	SHROOM4	23	50350752	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08	34509492	50350752	104919808	126	17090											
HEPH	9843	hgsc.bcm.edu	37	X	65423314	65423314	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	C	65423314	A	C	65423314	3	2	268	1	0	0	0	0	1	0	0	0	7061	391	14	5	2398	5	HEPH	23	65423314	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	15072562	65423314	89847246	127	17091											
TREX2	11219	broad.mit.edu	37	X	152710189	152710189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	T	152710189	G	T	152710189	3	4	268	1	0	0	0	0	1	0	0	0	16489	991	35	4	13	4	TREX2	23	152710189	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	87286875	152710189	2560371	128	17092											
ATAD3C	219293	bcgsc.ca	37	1	1392552	1392552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	1392552	C	G	1392552	3	3	269	1	0	0	0	0	1	0	0	0	1075	760	27	4	763	4	ATAD3C	1	1392552	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08		1392552	247858069	1	17093											
PLA2G2A	5320	bcgsc.ca	37	1	20304929	20304929	+	Silent	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	20304929	G	A	20304929	2	1	269	1	0	0	0	0	0	0	0	1	12002	933	33	2		2	PLA2G2A	1	20304929	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	18912377	20304929	228945692	2	17094											
ADC	113451	broad.mit.edu	37	1	33583680	33583681	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	33583681	-	C	33583680	7	5	269	1	0	1	1	0	0	0	0	0	287	1203	42	0	1237	0	ADC	1	33583680	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	13278751	33583680	215666941	3	17095											
PHC2	1912	bcgsc.ca	37	1	33832972	33832972	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	33832972	T	G	33832972	3	3	269	1	0	0	0	0	1	0	0	0	11824	1696	59	5	1891	5	PHC2	1	33832972	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	249292	33832972	215417649	4	17096											
ZMYM4	9202	bcgsc.ca	37	1	35870649	35870649	+	Missense_Mutation	SNP	T	T	G	rs200301387		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	35870649	T	G	35870649	3	3	269	1	0	0	0	0	1	0	0	0	17714	1696	59	5	3648	5	ZMYM4	1	35870649	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	2037677	35870649	213379972	5	17097											
FHL3	2275	bcgsc.ca	37	1	38463740	38463740	+	Missense_Mutation	SNP	A	A	C	rs201163097		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	38463740	A	C	38463740	3	2	269	1	0	0	0	0	1	0	0	0	5887	157	6	5	458	5	FHL3	1	38463740	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2593091	38463740	210786881	6	17098											
MACF1	23499	bcgsc.ca	37	1	39845028	39845028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	39845028	A	G	39845028	3	3	269	1	0	0	0	0	1	0	0	0	9151	246	9	3	13589	3	MACF1	1	39845028	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1381288	39845028	209405593	7	17099											
SCMH1	22955	hgsc.bcm.edu	37	1	41579112	41579113	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	41579113	-	G	41579112	7	5	269	1	0	1	1	0	0	0	0	0	13921	1567	55	0	1460	0	SCMH1	1	41579112	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	1734084	41579112	207671509	8	17100											
DOCK7	85440	bcgsc.ca	37	1	62923219	62923219	+	Missense_Mutation	SNP	T	T	G	rs200939372		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	62923219	T	G	62923219	3	3	269	1	0	0	0	0	1	0	0	0	4694	1696	59	5	60	5	DOCK7	1	62923219	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	21344107	62923219	186327402	9	17101											
WDR78	79819	broad.mit.edu	37	1	67390432	67390433	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	67390433	-	G	67390432	7	5	269	1	0	1	1	0	0	0	0	0	17340	1812	63	0	2588	0	WDR78	1	67390432	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	4467213	67390432	181860189	10	17102											
FRRS1	391059	bcgsc.ca	37	1	100194174	100194174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	100194174	C	A	100194174	3	1	269	1	0	0	0	0	1	0	0	0	6067	595	21	4	1035	4	FRRS1	1	100194174	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	32803742	100194174	149056447	11	17103											
CLCC1	23155	bcgsc.ca	37	1	109486197	109486197	+	Missense_Mutation	SNP	G	G	T	rs201600225		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	109486197	G	T	109486197	3	4	269	1	0	0	0	0	1	0	0	0	3462	1029	36	4	1077	4	CLCC1	1	109486197	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	9292023	109486197	139764424	12	17104											
AMPD2	271	broad.mit.edu	37	1	110167929	110167930	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	110167930	-	C	110167929	7	5	269	1	0	1	1	0	0	0	0	0	586	1538	54	0	278	0	AMPD2	1	110167929	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	681732	110167929	139082692	13	17105											
CGN	57530	bcgsc.ca	37	1	151491486	151491487	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	151491487	-	T	151491486	7	5	269	1	0	1	1	0	0	0	0	0	3305	797	28	0	493	0	CGN	1	151491486	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	41323557	151491486	97759135	14	17106											
S100A7	6278	bcgsc.ca	37	1	153430290	153430291	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	153430291	-	G	153430290	7	5	269	1	0	1	1	0	0	0	0	0	13796	1580	55	0	11	0	S100A7	1	153430290	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	1938804	153430290	95820331	15	17107											
FCGR2A	2212	bcgsc.ca	37	1	161480669	161480669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	161480669	T	G	161480669	3	3	269	1	0	0	0	0	1	0	0	0	5788	1696	59	5	683	5	FCGR2A	1	161480669	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8050379	161480669	87769952	16	17108											
ASTN1	460	bcgsc.ca	37	1	177030344	177030344	+	Missense_Mutation	SNP	T	T	C	rs201383783		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	177030344	T	C	177030344	3	2	269	1	0	0	0	0	1	0	0	0	1064	1551	54	3	3635	3	ASTN1	1	177030344	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	15549675	177030344	72220277	17	17109											
GLUL	2752	bcgsc.ca	37	1	182354977	182354977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	182354977	T	C	182354977	3	2	269	1	0	0	0	0	1	0	0	0	6485	1667	58	3	612	3	GLUL	1	182354977	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	5324633	182354977	66895644	18	17110											
IPO9	55705	bcgsc.ca	37	1	201827623	201827623	+	Missense_Mutation	SNP	G	G	C	rs201551339		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	201827623	G	C	201827623	3	2	269	1	0	0	0	0	1	0	0	0	7806	1319	46	4	1316	4	IPO9	1	201827623	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	19472646	201827623	47422998	19	17111											
FCAMR	83953	bcgsc.ca	37	1	207135670	207135670	+	Missense_Mutation	SNP	C	C	A	rs199611731		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	207135670	C	A	207135670	3	1	269	1	0	0	0	0	1	0	0	0	5779	477	17	4	1209	4	FCAMR	1	207135670	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	5308047	207135670	42114951	20	17112											
PLXNA2	5362	bcgsc.ca	37	1	208252715	208252715	+	Missense_Mutation	SNP	A	A	C	rs202222167		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	208252715	A	C	208252715	3	2	269	1	0	0	0	0	1	0	0	0	12127	159	6	5	3292	5	PLXNA2	1	208252715	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1117045	208252715	40997906	21	17113											
LAMB3	3914	hgsc.bcm.edu	37	1	209795956	209795956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	209795956	C	G	209795956	3	3	269	1	0	0	0	0	1	0	0	0	8619	768	27	4	916	4	LAMB3	1	209795956	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1543241	209795956	39454665	22	17114											
TRAF5	7188	bcgsc.ca	37	1	211545690	211545690	+	Nonsense_Mutation	SNP	C	C	A	rs200264560		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	211545690	C	A	211545690	4	1	269	1	0	0	0	0	0	1	0	0	16456	518	18	4	1358	4	TRAF5	1	211545690	Nonsense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1749734	211545690	37704931	23	17115											
TP53BP2	7159	bcgsc.ca	37	1	223990474	223990474	+	Missense_Mutation	SNP	A	A	C	rs199538625		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	223990474	A	C	223990474	3	2	269	1	0	0	0	0	1	0	0	0	16396	159	6	5	2493	5	TP53BP2	1	223990474	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	12444784	223990474	25260147	24	17116											
OBSCN	84033	hgsc.bcm.edu	37	1	228559225	228559225	+	Missense_Mutation	SNP	G	G	A	rs200269110		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	228559225	G	A	228559225	3	1	269	1	0	0	0	0	1	0	0	0	10819	1059	37	1	22326	1	OBSCN	1	228559225	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	4568751	228559225	20691396	25	17117											
OR2T12	127064	hgsc.bcm.edu	37	1	248458346	248458346	+	Missense_Mutation	SNP	C	C	T	rs71535238		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	248458346	C	T	248458346	3	4	269	1	0	0	0	0	1	0	0	0	11026	739	26	2	430	2	OR2T12	1	248458346	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	19899121	248458346	792275	26	17118											
HS1BP3	64342	bcgsc.ca	37	2	20818846	20818846	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	20818846	C	T	20818846	2	4	269	1	0	0	0	0	0	0	0	1	7368	912	32	2		2	HS1BP3	2	20818846	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08		20818846	222380527	27	17119	227	2									
HS1BP3	64342	bcgsc.ca	37	2	20818851	20818851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	20818851	G	C	20818851	3	2	269	1	0	0	0	0	1	0	0	0	7368	1328	46	4	107	4	HS1BP3	2	20818851	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	5	20818851	222380522	28	17120	227	2									
TMEM214	54867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27259433	27259433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	27259433	T	G	27259433	3	3	269	1	0	0	0	0	1	0	0	0	16149	1841	64	5	821	5	TMEM214	2	27259433	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	6440582	27259433	215939940	29	17121											
CGREF1	10669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27327221	27327221	+	Missense_Mutation	SNP	G	G	T	rs112618911	byfrequency;alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	27327221	G	T	27327221	3	4	269	1	0	0	0	0	1	0	0	0	3307	1145	40	4	1154	4	CGREF1	2	27327221	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	67788	27327221	215872152	30	17122											
ZNF512	84450	bcgsc.ca	37	2	27840357	27840357	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	27840357	A	G	27840357	2	3	269	1	0	0	0	0	0	0	0	1	17968	233	9	3		3	ZNF512	2	27840357	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	513136	27840357	215359016	31	17123											
SPAST	6683	hgsc.bcm.edu	37	2	32289269	32289269	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	32289269	C	G	32289269	2	3	269	1	0	0	0	0	0	0	0	1	15009	668	24	4		4	SPAST	2	32289269	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	4448912	32289269	210910104	32	17124											
FAM98A	25940	bcgsc.ca	37	2	33813450	33813450	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	33813450	A	G	33813450	2	3	269	1	0	0	0	0	0	0	0	1	5663	291	11	3		3	FAM98A	2	33813450	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1524181	33813450	209385923	33	17125											
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37454852	37454852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	37454852	G	A	37454852	3	1	269	1	0	0	0	0	1	0	0	0	3206	1000	35	2	1740	2	CEBPZ	2	37454852	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3641402	37454852	205744521	34	17126											
ATL2	64225	bcgsc.ca	37	2	38525498	38525498	+	Missense_Mutation	SNP	T	T	G	rs76204302		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	38525498	T	G	38525498	3	3	269	1	0	0	0	0	1	0	0	0	1107	1638	57	5	451	5	ATL2	2	38525498	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1070646	38525498	204673875	35	17127											
ZNF514	84874	bcgsc.ca	37	2	95818976	95818976	+	Missense_Mutation	SNP	A	A	C	rs79400981		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	95818976	A	C	95818976	3	2	269	1	0	0	0	0	1	0	0	0	17971	159	6	5	1191	5	ZNF514	2	95818976	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	57293478	95818976	147380397	36	17128											
GPR45	11250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	105858582	105858582	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	105858582	C	G	105858582	2	3	269	1	0	0	0	0	0	0	0	1	6703	668	24	4		4	GPR45	2	105858582	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	10039606	105858582	137340791	37	17129											
TGFBRAP1	9392	bcgsc.ca	37	2	105924084	105924085	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	105924085	-	C	105924084	7	5	269	1	0	1	1	0	0	0	0	0	15836	1190	42	0	1951	0	TGFBRAP1	2	105924084	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	65502	105924084	137275289	38	17130											
CBWD2	150472	hgsc.bcm.edu	37	2	114195459	114195459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	114195459	T	G	114195459	3	3	269	1	0	0	0	0	1	0	0	0	2715	1725	60	5	16	5	CBWD2	2	114195459	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8271375	114195459	129003914	39	17131											
GLI2	2736	hgsc.bcm.edu	37	2	121746538	121746538	+	Silent	SNP	C	C	T	rs140479803		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	121746538	C	T	121746538	2	4	269	1	0	0	0	0	0	0	0	1	6445	535	19	1		1	GLI2	2	121746538	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	7551079	121746538	121452835	40	17132											
TFCP2L1	29842	hgsc.bcm.edu;broad.mit.edu	37	2	122042681	122042681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	122042681	A	T	122042681	3	4	269	1	0	0	0	0	1	0	0	0	15808	304	11	5	1494	5	TFCP2L1	2	122042681	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	296143	122042681	121156692	41	17133											
IWS1	55677	bcgsc.ca	37	2	128262546	128262547	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	128262547	-	G	128262546	7	5	269	1	0	1	1	0	0	0	0	0	7938	175	7	0	1574	0	IWS1	2	128262546	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	6219865	128262546	114936827	42	17134											
ZRANB3	84083	bcgsc.ca	37	2	136107601	136107601	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	136107601	G	C	136107601	3	2	269	1	0	0	0	0	1	0	0	0	18236	1153	40	4	2763	4	ZRANB3	2	136107601	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	7845055	136107601	107091772	43	17135											
PLA2R1	22925	bcgsc.ca	37	2	160898583	160898583	+	Missense_Mutation	SNP	G	G	T	rs200625381		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	160898583	G	T	160898583	3	4	269	1	0	0	0	0	1	0	0	0	12017	1377	48	4	3891	4	PLA2R1	2	160898583	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	24790982	160898583	82300790	44	17136											
DPP4	1803	bcgsc.ca	37	2	162879272	162879272	+	Missense_Mutation	SNP	A	A	C	rs200047090		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	162879272	A	C	162879272	3	2	269	1	0	0	0	0	1	0	0	0	4731	43	2	5	1299	5	DPP4	2	162879272	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1980689	162879272	80320101	45	17137											
ALS2	57679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202626257	202626257	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	202626257	G	A	202626257	4	1	269	1	0	0	0	0	0	1	0	0	550	1386	48	2	4715	2	ALS2	2	202626257	Nonsense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	39746985	202626257	40573116	46	17138											
MYL1	4632	bcgsc.ca	37	2	211179729	211179729	+	Missense_Mutation	SNP	G	G	C	rs142821726		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	211179729	G	C	211179729	3	2	269	1	0	0	0	0	1	0	0	0	10050	1087	38	4	606	4	MYL1	2	211179729	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	8553472	211179729	32019644	47	17139											
OBSL1	23363	hgsc.bcm.edu	37	2	220435880	220435880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	220435880	A	C	220435880	3	2	269	1	0	0	0	0	1	0	0	0	10820	156	6	5	5851	5	OBSL1	2	220435880	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	9256151	220435880	22763493	48	17140											
SLC19A3	80704	bcgsc.ca	37	2	228560681	228560681	+	Missense_Mutation	SNP	T	T	G	rs201784334		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	228560681	T	G	228560681	3	3	269	1	0	0	0	0	1	0	0	0	14443	1696	59	5	406	5	SLC19A3	2	228560681	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8124801	228560681	14638692	49	17141											
CIDEC	63924	hgsc.bcm.edu	37	3	9911862	9911862	+	Missense_Mutation	SNP	G	G	C	rs201802471		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	9911862	G	C	9911862	3	2	269	1	0	0	0	0	1	0	0	0	3429	1203	42	4	376	4	CIDEC	3	9911862	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		9911862	188110568	50	17142											
OR5H15	403274	hgsc.bcm.edu	37	3	97888448	97888448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	97888448	T	C	97888448	3	2	269	1	0	0	0	0	1	0	0	0	11168	1406	49	3	907	3	OR5H15	3	97888448	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	87976586	97888448	100133982	51	17143											
TMPRSS7	344805	bcgsc.ca	37	3	111780727	111780727	+	Missense_Mutation	SNP	C	C	A	rs200385589		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	111780727	C	A	111780727	3	1	269	1	0	0	0	0	1	0	0	0	16264	477	17	4	1056	4	TMPRSS7	3	111780727	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	13892279	111780727	86241703	52	17144											
DTX3L	151636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122283388	122283388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	122283388	G	T	122283388	3	4	269	1	0	0	0	0	1	0	0	0	4798	1116	39	4	117	4	DTX3L	3	122283388	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	10502661	122283388	75739042	53	17145											
SLC12A8	84561	broad.mit.edu	37	3	124896700	124896700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	124896700	C	T	124896700	3	4	269	1	0	0	0	0	1	0	0	0	14402	739	26	2	1675	2	SLC12A8	3	124896700	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	2613312	124896700	73125730	54	17146											
SLC41A3	54946	bcgsc.ca	37	3	125786910	125786911	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	125786911	-	T	125786910	7	5	269	1	0	1	1	0	0	0	0	0	14644	796	28	0	1711	0	SLC41A3	3	125786910	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	890210	125786910	72235520	55	17147											
SEC61A1	29927	bcgsc.ca	37	3	127774579	127774579	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	127774579	C	T	127774579	2	4	269	1	0	0	0	0	0	0	0	1	14013	912	32	2		2	SEC61A1	3	127774579	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1987669	127774579	70247851	56	17148											
CDV3	55573	bcgsc.ca	37	3	133306868	133306868	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	133306868	G	C	133306868	3	2	269	1	0	0	0	0	1	0	0	0	3183	971	34	4	793	4	CDV3	3	133306868	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	5532289	133306868	64715562	57	17149											
PCOLCE2	26577	hgsc.bcm.edu	37	3	142607735	142607735	+	Silent	SNP	T	T	G	rs202134327		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	142607735	T	G	142607735	2	3	269	1	0	0	0	0	0	0	0	1	11602	1550	54	5		5	PCOLCE2	3	142607735	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	9300867	142607735	55414695	58	17150											
GPR149	344758	bcgsc.ca	37	3	154055935	154055935	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	154055935	A	G	154055935	2	3	269	1	0	0	0	0	0	0	0	1	6661	291	11	3		3	GPR149	3	154055935	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	11448200	154055935	43966495	59	17151											
PSMD2	5708	hgsc.bcm.edu	37	3	184019770	184019770	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	184019770	C	T	184019770	2	4	269	1	0	0	0	0	0	0	0	1	12708	776	27	1		1	PSMD2	3	184019770	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	29963835	184019770	14002660	60	17152											
FAM43A	131583	hgsc.bcm.edu	37	3	194408136	194408136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	194408136	A	G	194408136	3	3	269	1	0	0	0	0	1	0	0	0	5569	43	2	3	583	3	FAM43A	3	194408136	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	10388366	194408136	3614294	61	17153											
FAM193A	8603	bcgsc.ca	37	4	2674038	2674038	+	Missense_Mutation	SNP	A	A	C	rs201152034		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	2674038	A	C	2674038	3	2	269	1	0	0	0	0	1	0	0	0	5528	159	6	5	1431	5	FAM193A	4	2674038	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		2674038	188480238	62	17154											
OTOP1	133060	hgsc.bcm.edu	37	4	4228479	4228479	+	Missense_Mutation	SNP	G	G	C	rs199890951		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	4228479	G	C	4228479	3	2	269	1	0	0	0	0	1	0	0	0	11312	1174	41	4	1749	4	OTOP1	4	4228479	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1554441	4228479	186925797	63	17155											
ACOX3	8310	bcgsc.ca	37	4	8383307	8383307	+	Missense_Mutation	SNP	A	A	C	rs200650508		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	8383307	A	C	8383307	3	2	269	1	0	0	0	0	1	0	0	0	160	43	2	5	557	5	ACOX3	4	8383307	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	4154828	8383307	182770969	64	17156											
LGI2	55203	bcgsc.ca	37	4	25005443	25005443	+	Missense_Mutation	SNP	A	A	C	rs77736957		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	25005443	A	C	25005443	3	2	269	1	0	0	0	0	1	0	0	0	8759	159	6	5	373	5	LGI2	4	25005443	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	16622136	25005443	166148833	65	17157											
SLAIN2	57606	broad.mit.edu	37	4	48422364	48422364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	48422364	G	A	48422364	3	1	269	1	0	0	0	0	1	0	0	0	14379	1232	43	2	1609	2	SLAIN2	4	48422364	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	23416921	48422364	142731912	66	17158											
LPHN3	23284	bcgsc.ca	37	4	62542580	62542580	+	Silent	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	62542580	T	G	62542580	2	3	269	1	0	0	0	0	0	0	0	1	8924	1654	58	5		5	LPHN3	4	62542580	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	14120216	62542580	128611696	67	17159											
CFI	3426	bcgsc.ca	37	4	110670458	110670458	+	Missense_Mutation	SNP	A	A	C	rs199838992		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	110670458	A	C	110670458	3	2	269	1	0	0	0	0	1	0	0	0	3291	159	6	5	703	5	CFI	4	110670458	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	48127878	110670458	80483818	68	17160											
NEUROG2	63973	hgsc.bcm.edu	37	4	113436466	113436466	+	Missense_Mutation	SNP	C	C	G	rs200923931		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	113436466	C	G	113436466	3	3	269	1	0	0	0	0	1	0	0	0	10360	652	23	4	656	4	NEUROG2	4	113436466	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	2766008	113436466	77717810	69	17161											
ANK2	287	bcgsc.ca	37	4	114275831	114275831	+	Missense_Mutation	SNP	G	G	C	rs201005444		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	114275831	G	C	114275831	3	2	269	1	0	0	0	0	1	0	0	0	621	962	34	4	6272	4	ANK2	4	114275831	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	839365	114275831	76878445	70	17162											
MAML3	55534	bcgsc.ca	37	4	140646955	140646955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	140646955	A	G	140646955	3	3	269	1	0	0	0	0	1	0	0	0	9214	304	11	3	1058	3	MAML3	4	140646955	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	26371124	140646955	50507321	71	17163											
TBC1D9	23158	broad.mit.edu	37	4	141580761	141580761	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	141580761	G	C	141580761	4	2	269	1	0	0	0	0	0	1	0	0	15639	1024	36	4	1942	4	TBC1D9	4	141580761	Nonsense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	933806	141580761	49573515	72	17164											
PDCD6	10016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	311485	311485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	311485	G	A	311485	3	1	269	1	0	0	0	0	1	0	0	0	11630	1058	37	1	463	1	PDCD6	5	311485	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		311485	180603775	73	17165											
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	6616902	6616902	+	Missense_Mutation	SNP	G	G	T	rs138724893	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	6616902	G	T	6616902	3	4	269	1	0	0	0	0	1	0	0	0	10685	1145	40	4	1388	4	NSUN2	5	6616902	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	6305417	6616902	174298358	74	17166											
C5orf51	285636	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	41911262	41911262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	41911262	A	T	41911262	3	4	269	1	0	0	0	0	1	0	0	0	2310	14	1	5	481	5	C5orf51	5	41911262	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	35294360	41911262	139003998	75	17167											
FGF10	2255	broad.mit.edu	37	5	44388715	44388717	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	-	44388717	AGC	-	44388715	7	5	269	1	0	1	0	1	0	0	0	0	5846	72	3	0	568	0	FGF10	5	44388715	In_Frame_Del	DEL	AGC	TCGA-B9-4117-01A-01D-1252-08	2477453	44388715	136526545	76	17168											
SV2C	22987	bcgsc.ca	37	5	75490896	75490896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	75490896	C	T	75490896	3	4	269	1	0	0	0	0	1	0	0	0	15431	913	32	2	739	2	SV2C	5	75490896	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	31102181	75490896	105424364	77	17169											
BHMT	635	bcgsc.ca	37	5	78426877	78426877	+	Missense_Mutation	SNP	G	G	A	rs201007228		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	78426877	G	A	78426877	3	1	269	1	0	0	0	0	1	0	0	0	1425	943	33	2	1189	2	BHMT	5	78426877	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	2935981	78426877	102488383	78	17170											
SNCAIP	9627	bcgsc.ca	37	5	121776345	121776345	+	Missense_Mutation	SNP	C	C	T	rs200684003		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	121776345	C	T	121776345	3	4	269	1	0	0	0	0	1	0	0	0	14854	913	32	2	1340	2	SNCAIP	5	121776345	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	43349468	121776345	59138915	79	17171											
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	126753406	126753406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	126753406	G	A	126753406	3	1	269	1	0	0	0	0	1	0	0	0	9467	1349	47	2	1241	2	MEGF10	5	126753406	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	4977061	126753406	54161854	80	17172											
PCDHGC3	5098	hgsc.bcm.edu	37	5	140856534	140856534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	140856534	G	C	140856534	3	2	269	1	0	0	0	0	1	0	0	0	11576	1203	42	4	853	4	PCDHGC3	5	140856534	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	14103128	140856534	40058726	81	17173											
FGF1	2246	bcgsc.ca	37	5	141974880	141974880	+	Missense_Mutation	SNP	A	A	G	rs201277854		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	141974880	A	G	141974880	3	3	269	1	0	0	0	0	1	0	0	0	5845	304	11	3	28	3	FGF1	5	141974880	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1118346	141974880	38940380	82	17174											
HAVCR1	26762	bcgsc.ca	37	5	156482504	156482504	+	Silent	SNP	A	A	C	rs141472249		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	156482504	A	C	156482504	2	2	269	1	0	0	0	0	0	0	0	1	6980	262	10	5		5	HAVCR1	5	156482504	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	14507624	156482504	24432756	83	17175											
PANK3	79646	bcgsc.ca	37	5	167991022	167991022	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	167991022	A	C	167991022	3	2	269	1	0	0	0	0	1	0	0	0	11425	157	6	5	444	5	PANK3	5	167991022	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	11508518	167991022	12924238	84	17176											
FBXW11	23291	bcgsc.ca	37	5	171384675	171384675	+	Missense_Mutation	SNP	C	C	T	rs201948522		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	171384675	C	T	171384675	3	4	269	1	0	0	0	0	1	0	0	0	5771	681	24	2	1666	2	FBXW11	5	171384675	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	3393653	171384675	9530585	85	17177											
TFAP2A	7020	hgsc.bcm.edu	37	6	10398708	10398708	+	Missense_Mutation	SNP	T	T	G	rs201591227		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	10398708	T	G	10398708	3	3	269	1	0	0	0	0	1	0	0	0	15799	1725	60	5	61	5	TFAP2A	6	10398708	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08		10398708	160716359	86	17178											
ELOVL2	54898	bcgsc.ca	37	6	11005704	11005704	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	11005704	A	C	11005704	2	2	269	1	0	0	0	0	0	0	0	1	5076	378	14	5		5	ELOVL2	6	11005704	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	606996	11005704	160109363	87	17179											
CAP2	10486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	17507928	17507928	+	Silent	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	17507928	T	C	17507928	2	2	269	1	0	0	0	0	0	0	0	1	2622	1509	53	3		3	CAP2	6	17507928	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	6502224	17507928	153607139	88	17180											
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056427	26056427	+	Missense_Mutation	SNP	T	T	G	rs182693914		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	26056427	T	G	26056427	3	3	269	1	0	0	0	0	1	0	0	0	7131	1725	60	5	415	5	HIST1H1C	6	26056427	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8548499	26056427	145058640	89	17181											
BTN3A2	11118	bcgsc.ca	37	6	26370630	26370630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	26370630	T	G	26370630	3	3	269	1	0	0	0	0	1	0	0	0	1565	1638	57	5	524	5	BTN3A2	6	26370630	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	314203	26370630	144744437	90	17182											
TRIM39	56658	bcgsc.ca	37	6	30297131	30297131	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	30297131	G	C	30297131	3	2	269	1	0	0	0	0	1	0	0	0	16525	1319	46	4	39	4	TRIM39	6	30297131	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3926501	30297131	140817936	91	17183											
DST	667	bcgsc.ca	37	6	56417908	56417908	+	Missense_Mutation	SNP	T	T	G	rs78180015		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	56417908	T	G	56417908	3	3	269	1	0	0	0	0	1	0	0	0	4785	1696	59	5	7874	5	DST	6	56417908	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	26120777	56417908	114697159	92	17184											
SMPD2	6610	broad.mit.edu	37	6	109764877	109764877	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	109764877	A	G	109764877	2	3	269	1	0	0	0	0	0	0	0	1	14818	291	11	3		3	SMPD2	6	109764877	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	53346969	109764877	61350190	93	17185											
VGLL2	245806	bcgsc.ca	37	6	117589438	117589438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	117589438	A	C	117589438	3	2	269	1	0	0	0	0	1	0	0	0	17171	43	2	5	181	5	VGLL2	6	117589438	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7824561	117589438	53525629	94	17186											
FAM184A	79632	bcgsc.ca	37	6	119282964	119282964	+	Silent	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	119282964	T	G	119282964	2	3	269	1	0	0	0	0	0	0	0	1	5515	1683	59	5		5	FAM184A	6	119282964	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1693526	119282964	51832103	95	17187											
PBOV1	59351	bcgsc.ca	37	6	138539226	138539226	+	Missense_Mutation	SNP	C	C	T	rs200344940		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	138539226	C	T	138539226	3	4	269	1	0	0	0	0	1	0	0	0	11497	922	32	2	104	2	PBOV1	6	138539226	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	19256262	138539226	32575841	96	17188											
PHACTR2	9749	bcgsc.ca	37	6	144086447	144086447	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	144086447	G	C	144086447	2	2	269	1	0	0	0	0	0	0	0	1	11817	1074	38	4		4	PHACTR2	6	144086447	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	5547221	144086447	27028620	97	17189											
UTRN	7402	bcgsc.ca	37	6	144808805	144808805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	144808805	A	C	144808805	3	2	269	1	0	0	0	0	1	0	0	0	17115	43	2	5	4054	5	UTRN	6	144808805	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	722358	144808805	26306262	98	17190											
SYNE1	23345	bcgsc.ca	37	6	152470619	152470619	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	152470619	C	G	152470619	3	3	269	1	0	0	0	0	1	0	0	0	15457	768	27	4	1875	4	SYNE1	6	152470619	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	7661814	152470619	18644448	99	17191											
NOX3	50508	bcgsc.ca	37	6	155776042	155776042	+	Missense_Mutation	SNP	C	C	A	rs200865731		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	155776042	C	A	155776042	3	1	269	1	0	0	0	0	1	0	0	0	10564	595	21	4	1592	4	NOX3	6	155776042	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	3305423	155776042	15339025	100	17192											
PLG	5340	broad.mit.edu	37	6	161152867	161152867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	161152867	C	A	161152867	3	1	269	1	0	0	0	0	1	0	0	0	12093	623	22	4	1579	4	PLG	6	161152867	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	5376825	161152867	9962200	101	17193											
SFT2D1	113402	bcgsc.ca	37	6	166738061	166738061	+	Missense_Mutation	SNP	A	A	C	rs78154309		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	166738061	A	C	166738061	3	2	269	1	0	0	0	0	1	0	0	0	14198	159	6	5	117	5	SFT2D1	6	166738061	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	5585194	166738061	4377006	102	17194											
INTS1	26173	bcgsc.ca	37	7	1524994	1524994	+	Missense_Mutation	SNP	G	G	C	rs201952847		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	1524994	G	C	1524994	3	2	269	1	0	0	0	0	1	0	0	0	7782	962	34	4	3588	4	INTS1	7	1524994	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		1524994	157613669	103	17195											
HOXA4	3201	hgsc.bcm.edu	37	7	27170159	27170159	+	Missense_Mutation	SNP	C	C	T	rs6962314		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	27170159	C	T	27170159	3	4	269	1	0	0	0	0	1	0	0	0	7301	739	26	2	776	2	HOXA4	7	27170159	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	25645165	27170159	131968504	104	17196											
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	43916495	43916495	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	-	43916495	C	-	43916495	7	5	269	1	0	1	0	1	0	0	0	0	17038	739	26	0	232	0	URGCP	7	43916495	Frame_Shift_Del	DEL	C	TCGA-B9-4117-01A-01D-1252-08	16746336	43916495	115222168	105	17197											
GCK	2645	ucsc.edu	37	7	44186168	44186168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	44186168	C	A	44186168	3	1	269	1	0	0	0	0	1	0	0	0	6300	478	17	4	496	4	GCK	7	44186168	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	269673	44186168	114952495	106	17198											
TRIM74	378108	hgsc.bcm.edu	37	7	75028469	75028469	+	Silent	SNP	A	A	G	rs236633	by2hit2allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	75028469	A	G	75028469	2	3	269	1	0	0	0	0	0	0	0	1	16559	175	7	3		3	TRIM74	7	75028469	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	30842301	75028469	84110194	107	17199											
ABCB4	5244	bcgsc.ca	37	7	87072688	87072688	+	Missense_Mutation	SNP	T	T	C	rs201292029		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	87072688	T	C	87072688	3	2	269	1	0	0	0	0	1	0	0	0	43	1792	62	3	2625	3	ABCB4	7	87072688	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	12044219	87072688	72065975	108	17200											
MUC17	140453	bcgsc.ca	37	7	100675714	100675714	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	100675714	G	C	100675714	2	2	269	1	0	0	0	0	0	0	0	1	9981	1074	38	4		4	MUC17	7	100675714	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	13603026	100675714	58462949	109	17201											
CAV2	858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116140377	116140377	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	116140377	T	A	116140377	3	1	269	1	0	0	0	0	1	0	0	0	2696	1580	55	5	220	5	CAV2	7	116140377	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	15464663	116140377	42998286	110	17202											
MET	4233	bcgsc.ca	37	7	116380999	116380999	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	116380999	T	G	116380999	3	3	269	1	0	0	0	0	1	0	0	0	9492	1696	59	5	1635	5	MET	7	116380999	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	240622	116380999	42757664	111	17203											
NUP205	23165	bcgsc.ca	37	7	135290919	135290919	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	135290919	A	G	135290919	2	3	269	1	0	0	0	0	0	0	0	1	10766	320	12	3		3	NUP205	7	135290919	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	18909920	135290919	23847744	112	17204											
SLC13A4	26266	bcgsc.ca	37	7	135384143	135384143	+	Missense_Mutation	SNP	T	T	G	rs201310555		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	135384143	T	G	135384143	3	3	269	1	0	0	0	0	1	0	0	0	14407	1696	59	5	1051	5	SLC13A4	7	135384143	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	93224	135384143	23754520	113	17205											
OR9A2	135924	hgsc.bcm.edu	37	7	142724166	142724166	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	142724166	C	G	142724166	2	3	269	1	0	0	0	0	0	0	0	1	11255	494	18	4		4	OR9A2	7	142724166	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	7340023	142724166	16414497	114	17206											
SSPO	23145	hgsc.bcm.edu	37	7	149485465	149485465	+	Missense_Mutation	SNP	A	A	C	rs200617080		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	149485465	A	C	149485465	3	2	269	1	0	0	0	0	1	0	0	0	15201	159	6	5	3973	5	SSPO	7	149485465	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	6761299	149485465	9653198	115	17207											
LRRC61	65999	hgsc.bcm.edu	37	7	150033986	150033986	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	150033986	C	G	150033986	2	3	269	1	0	0	0	0	0	0	0	1	9024	755	27	4		4	LRRC61	7	150033986	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	548521	150033986	9104677	116	17208											
TMEM176A	55365	ucsc.edu	37	7	150500797	150500797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	150500797	C	A	150500797	4	1	269	1	0	0	0	0	0	1	0	0	16104	576	20	4	446	4	TMEM176A	7	150500797	Nonsense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	466811	150500797	8637866	117	17209											
GALNTL5	168391	bcgsc.ca	37	7	151699853	151699853	+	Missense_Mutation	SNP	A	A	G	rs200114484		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	151699853	A	G	151699853	3	3	269	1	0	0	0	0	1	0	0	0	6231	304	11	3	731	3	GALNTL5	7	151699853	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1199056	151699853	7438810	118	17210											
PAXIP1	22976	bcgsc.ca	37	7	154745994	154745994	+	Missense_Mutation	SNP	T	T	C	rs78770148		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	154745994	T	C	154745994	3	2	269	1	0	0	0	0	1	0	0	0	11494	1783	62	3	441	3	PAXIP1	7	154745994	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3046141	154745994	4392669	119	17211											
CSMD1	64478	bcgsc.ca	37	8	2820801	2820801	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	2820801	C	G	2820801	3	3	269	1	0	0	0	0	1	0	0	0	3946	768	27	4	1341	4	CSMD1	8	2820801	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08		2820801	143543221	120	17212											
DPYSL2	1808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	26505196	26505196	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	26505196	T	A	26505196	3	1	269	1	0	0	0	0	1	0	0	0	4749	1461	51	5	1203	5	DPYSL2	8	26505196	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	23684395	26505196	119858826	121	17213											
TMEM67	91147	bcgsc.ca	37	8	94800161	94800161	+	Missense_Mutation	SNP	A	A	C	rs79555627		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	94800161	A	C	94800161	3	2	269	1	0	0	0	0	1	0	0	0	16208	43	2	5	1694	5	TMEM67	8	94800161	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	68294965	94800161	51563861	122	17214											
UBR5	51366	bcgsc.ca	37	8	103300468	103300468	+	Silent	SNP	T	T	C	rs199686475		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	103300468	T	C	103300468	2	2	269	1	0	0	0	0	0	0	0	1	16917	1538	54	3		3	UBR5	8	103300468	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8500307	103300468	43063554	123	17215											
LRRC24	441381	hgsc.bcm.edu	37	8	145748092	145748092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	145748092	C	T	145748092	3	4	269	1	0	0	0	0	1	0	0	0	8986	623	22	2	236	2	LRRC24	8	145748092	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	42447624	145748092	615930	124	17216											
PTPRD	5789	bcgsc.ca	37	9	8507427	8507427	+	Silent	SNP	C	C	G	rs202247306		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	8507427	C	G	8507427	2	3	269	1	0	0	0	0	0	0	0	1	12812	726	26	4		4	PTPRD	9	8507427	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08		8507427	132706004	125	17217											
TEK	7010	bcgsc.ca	37	9	27173339	27173339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	27173339	A	G	27173339	3	3	269	1	0	0	0	0	1	0	0	0	15763	247	9	3	902	3	TEK	9	27173339	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	18665912	27173339	114040092	126	17218											
PIGO	84720	bcgsc.ca	37	9	35089137	35089137	+	Silent	SNP	A	A	C	rs200684520		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	35089137	A	C	35089137	2	2	269	1	0	0	0	0	0	0	0	1	11901	146	6	5		5	PIGO	9	35089137	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7915798	35089137	106124294	127	17219											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35711016	35711016	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	35711016	C	T	35711016	2	4	269	1	0	0	0	0	0	0	0	1	15959	680	24	2		2	TLN1	9	35711016	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	621879	35711016	105502415	128	17220											
RASEF	158158	bcgsc.ca	37	9	85615928	85615928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	85615928	C	A	85615928	3	1	269	1	0	0	0	0	1	0	0	0	13081	477	17	4	934	4	RASEF	9	85615928	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	49904912	85615928	55597503	129	17221											
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88940291	88940291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	88940291	G	C	88940291	3	2	269	1	0	0	0	0	1	0	0	0	17604	1057	37	4	2804	4	ZCCHC6	9	88940291	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3324363	88940291	52273140	130	17222											
HSDL2	84263	bcgsc.ca	37	9	115166387	115166387	+	Missense_Mutation	SNP	G	G	C	rs184202621		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	115166387	G	C	115166387	3	2	269	1	0	0	0	0	1	0	0	0	7401	1087	38	4	136	4	HSDL2	9	115166387	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	26226096	115166387	26047044	131	17223											
AKNA	80709	broad.mit.edu	37	9	117139572	117139572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	117139572	A	C	117139572	3	2	269	1	0	0	0	0	1	0	0	0	463	159	6	5	3884	5	AKNA	9	117139572	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1973185	117139572	24073859	132	17224											
CRAT	1384	bcgsc.ca	37	9	131864811	131864812	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	131864812	-	T	131864811	7	5	269	1	0	1	1	0	0	0	0	0	3849	796	28	0	1422	0	CRAT	9	131864811	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	14725239	131864811	9348620	133	17225											
ANK3	288	hgsc.bcm.edu	37	10	61819138	61819138	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	61819138	G	C	61819138	3	2	269	1	0	0	0	0	1	0	0	0	622	1066	37	4	499	4	ANK3	10	61819138	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		61819138	73715609	134	17226											
DNA2	1763	bcgsc.ca	37	10	70196869	70196869	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	70196869	A	C	70196869	2	2	269	1	0	0	0	0	0	0	0	1	4598	146	6	5		5	DNA2	10	70196869	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	8377731	70196869	65337878	135	17227											
ENTPD1	953	bcgsc.ca	37	10	97604357	97604357	+	Missense_Mutation	SNP	A	A	G	rs80329743		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	97604357	A	G	97604357	3	3	269	1	0	0	0	0	1	0	0	0	5140	333	12	3	653	3	ENTPD1	10	97604357	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	27407488	97604357	37930390	136	17228											
ABCC2	1244	bcgsc.ca	37	10	101603581	101603581	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	101603581	T	G	101603581	3	3	269	1	0	0	0	0	1	0	0	0	53	1696	59	5	3873	5	ABCC2	10	101603581	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3999224	101603581	33931166	137	17229											
SEC31B	25956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102255181	102255181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	102255181	C	G	102255181	3	3	269	1	0	0	0	0	1	0	0	0	14012	912	32	4	1138	4	SEC31B	10	102255181	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	651600	102255181	33279566	138	17230											
ITPRIP	85450	bcgsc.ca	37	10	106074688	106074689	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	106074689	-	G	106074688	7	5	269	1	0	1	1	0	0	0	0	0	7930	1567	55	0	525	0	ITPRIP	10	106074688	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	3819507	106074688	29460059	139	17231											
XPNPEP1	7511	bcgsc.ca	37	10	111667523	111667523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	111667523	G	T	111667523	3	4	269	1	0	0	0	0	1	0	0	0	17454	1386	48	4	1904	4	XPNPEP1	10	111667523	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	5592835	111667523	23867224	140	17232											
DCLRE1A	9937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115608965	115608965	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	115608965	A	G	115608965	2	3	269	1	0	0	0	0	0	0	0	1	4296	262	10	3		3	DCLRE1A	10	115608965	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	3941442	115608965	19925782	141	17233											
MRGPRX2	117194	bcgsc.ca	37	11	19077079	19077079	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	19077079	G	C	19077079	3	2	269	1	0	0	0	0	1	0	0	0	9774	962	34	4	125	4	MRGPRX2	11	19077079	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		19077079	115929437	142	17234											
PDHX	8050	bcgsc.ca	37	11	34988257	34988258	+	Frame_Shift_Ins	INS	-	-	ACTCCAGCCCCCC	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	ACTCCAGCCCCCC	34988258	-	ACTCCAGCCCCCC	34988257	7	5	269	1	0	1	1	0	0	0	0	0	11674	159	6	0	853	0	PDHX	11	34988257	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	15911178	34988257	100018259	143	17235											
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57188512	57188512	+	Missense_Mutation	SNP	C	C	T	rs148055054		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	57188512	C	T	57188512	3	4	269	1	0	0	0	0	1	0	0	0	14647	536	19	1	1043	1	SLC43A3	11	57188512	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	22200255	57188512	77818004	144	17236											
DAGLA	747	broad.mit.edu	37	11	61495728	61495729	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	61495729	-	G	61495728	7	5	269	1	0	1	1	0	0	0	0	0	4228	188	7	0	762	0	DAGLA	11	61495728	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	4307216	61495728	73510788	145	17237											
SLC22A10	387775	bcgsc.ca	37	11	63071626	63071626	+	Missense_Mutation	SNP	T	T	G	rs76578107		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	63071626	T	G	63071626	3	3	269	1	0	0	0	0	1	0	0	0	14454	1731	60	5	1362	5	SLC22A10	11	63071626	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1575898	63071626	71934890	146	17238											
SYVN1	84447	bcgsc.ca	37	11	64898255	64898255	+	Missense_Mutation	SNP	T	T	G	rs199952384		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	64898255	T	G	64898255	3	3	269	1	0	0	0	0	1	0	0	0	15499	1696	59	5	895	5	SYVN1	11	64898255	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1826629	64898255	70108261	147	17239											
LTBP3	4054	hgsc.bcm.edu	37	11	65306859	65306859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	65306859	C	T	65306859	3	4	269	1	0	0	0	0	1	0	0	0	9082	652	23	1	219	1	LTBP3	11	65306859	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	408604	65306859	69699657	148	17240											
SF3B2	10992	hgsc.bcm.edu	37	11	65835460	65835460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	65835460	A	C	65835460	3	2	269	1	0	0	0	0	1	0	0	0	14164	43	2	5	2452	5	SF3B2	11	65835460	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	528601	65835460	69171056	149	17241											
FOLR2	2350	hgsc.bcm.edu	37	11	71932098	71932098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	71932098	A	G	71932098	3	3	269	1	0	0	0	0	1	0	0	0	5989	188	7	3	341	3	FOLR2	11	71932098	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	6096638	71932098	63074418	150	17242											
P2RY6	5031	bcgsc.ca	37	11	73007682	73007682	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	73007682	G	C	73007682	3	2	269	1	0	0	0	0	1	0	0	0	11361	1203	42	4	121	4	P2RY6	11	73007682	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1075584	73007682	61998834	151	17243											
GDPD5	81544	broad.mit.edu	37	11	75146590	75146591	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	75146591	-	G	75146590	7	5	269	1	0	1	1	0	0	0	0	0	6334	1580	55	0	41	0	GDPD5	11	75146590	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	2138908	75146590	59859926	152	17244											
FAT3	120114	bcgsc.ca	37	11	92533292	92533292	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	92533292	C	T	92533292	2	4	269	1	0	0	0	0	0	0	0	1	5698	854	30	2		2	FAT3	11	92533292	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	17386702	92533292	42473224	153	17245											
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu	37	11	110454361	110454361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	110454361	C	G	110454361	3	3	269	1	0	0	0	0	1	0	0	0	870	710	25	4	2071	4	ARHGAP20	11	110454361	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	17921069	110454361	24552155	154	17246											
ST3GAL4	6484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	126276866	126276866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	126276866	G	C	126276866	3	2	269	1	0	0	0	0	1	0	0	0	15229	1175	41	4	128	4	ST3GAL4	11	126276866	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	15822505	126276866	8729650	155	17247											
ACAD8	27034	bcgsc.ca	37	11	134127129	134127129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	134127129	A	C	134127129	3	2	269	1	0	0	0	0	1	0	0	0	110	159	6	5	368	5	ACAD8	11	134127129	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7850263	134127129	879387	156	17248											
WNK1	65125	bcgsc.ca	37	12	977305	977305	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	977305	A	C	977305	3	2	269	1	0	0	0	0	1	0	0	0	17389	391	14	5	2706	5	WNK1	12	977305	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		977305	132874590	157	17249											
WNK1	65125	bcgsc.ca	37	12	988849	988849	+	Silent	SNP	A	A	C	rs201077153		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	988849	A	C	988849	2	2	269	1	0	0	0	0	0	0	0	1	17389	262	10	5		5	WNK1	12	988849	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	11544	988849	132863046	158	17250											
C1S	716	bcgsc.ca	37	12	7171607	7171607	+	Missense_Mutation	SNP	G	G	T	rs201505473		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	7171607	G	T	7171607	3	4	269	1	0	0	0	0	1	0	0	0	1976	1377	48	4	442	4	C1S	12	7171607	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	6182758	7171607	126680288	159	17251											
CD163	9332	bcgsc.ca	37	12	7654024	7654024	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	7654024	A	C	7654024	2	2	269	1	0	0	0	0	0	0	0	1	2969	146	6	5		5	CD163	12	7654024	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	482417	7654024	126197871	160	17252											
PRB2	653247	broad.mit.edu	37	12	11545949	11545951	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	-	11545951	TGC	-	11545949	7	5	269	1	0	1	0	1	0	0	0	0	12453	1821	63	0	191	0	PRB2	12	11545949	In_Frame_Del	DEL	TGC	TCGA-B9-4117-01A-01D-1252-08	3891925	11545949	122305946	161	17253											
PKP2	5318	bcgsc.ca	37	12	32974403	32974403	+	Missense_Mutation	SNP	A	A	C	rs200327989		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	32974403	A	C	32974403	3	2	269	1	0	0	0	0	1	0	0	0	11992	159	6	5	633	5	PKP2	12	32974403	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	21428454	32974403	100877492	162	17254											
SLC11A2	4891	bcgsc.ca	37	12	51384724	51384724	+	Missense_Mutation	SNP	G	G	C	rs199589052		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	51384724	G	C	51384724	3	2	269	1	0	0	0	0	1	0	0	0	14394	1086	38	4	346	4	SLC11A2	12	51384724	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	18410321	51384724	82467171	163	17255											
SLC26A10	65012	bcgsc.ca	37	12	58017668	58017669	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	58017669	-	G	58017668	7	5	269	1	0	1	1	0	0	0	0	0	14528	1580	55	0	1133	0	SLC26A10	12	58017668	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	6632944	58017668	75834227	164	17256											
CCDC59	29080	bcgsc.ca	37	12	82750844	82750844	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	82750844	T	G	82750844	3	3	269	1	0	0	0	0	1	0	0	0	2831	1696	59	5	378	5	CCDC59	12	82750844	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	24733176	82750844	51101051	165	17257											
UBE2N	7334	bcgsc.ca	37	12	93804525	93804525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	93804525	G	T	93804525	3	4	269	1	0	0	0	0	1	0	0	0	16878	1357	47	4	63	4	UBE2N	12	93804525	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	11053681	93804525	40047370	166	17258											
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102038482	102038482	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	102038482	A	T	102038482	3	4	269	1	0	0	0	0	1	0	0	0	10018	69	3	5	919	5	MYBPC1	12	102038482	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	8233957	102038482	31813413	167	17259											
STAB2	55576	bcgsc.ca	37	12	104030938	104030938	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	104030938	G	C	104030938	2	2	269	1	0	0	0	0	0	0	0	1	15250	1074	38	4		4	STAB2	12	104030938	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1992456	104030938	29820957	168	17260											
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112174685	112174685	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	112174685	T	A	112174685	3	1	269	1	0	0	0	0	1	0	0	0	108	1638	57	5	1730	5	ACAD10	12	112174685	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8143747	112174685	21677210	169	17261											
KNTC1	9735	broad.mit.edu;ucsc.edu	37	12	123105091	123105091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	123105091	C	T	123105091	3	4	269	1	0	0	0	0	1	0	0	0	8435	652	23	1	6449	1	KNTC1	12	123105091	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	10930406	123105091	10746804	170	17262											
RIMBP2	23504	bcgsc.ca	37	12	130892349	130892349	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	130892349	A	C	130892349	2	2	269	1	0	0	0	0	0	0	0	1	13376	262	10	5		5	RIMBP2	12	130892349	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7787258	130892349	2959546	171	17263											
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132551479	132551479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	132551479	T	A	132551479	3	1	269	1	0	0	0	0	1	0	0	0	5151	1435	50	5	8901	5	EP400	12	132551479	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1659130	132551479	1300416	172	17264											
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21189985	21189985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	21189985	T	G	21189985	3	3	269	1	0	0	0	0	1	0	0	0	7573	1638	57	5	1247	5	IFT88	13	21189985	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08		21189985	93979893	173	17265	228	2									
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21189988	21189988	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	21189988	T	A	21189988	3	1	269	1	0	0	0	0	1	0	0	0	7573	1493	52	5	1250	5	IFT88	13	21189988	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3	21189988	93979890	174	17266	228	2									
ATP8A2	51761	ucsc.edu	37	13	26156055	26156055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	26156055	G	T	26156055	3	4	269	1	0	0	0	0	1	0	0	0	1193	1241	43	4	2196	4	ATP8A2	13	26156055	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	4966067	26156055	89013823	175	17267											
BRCA2	675	bcgsc.ca	37	13	32906983	32906983	+	Silent	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	32906983	G	A	32906983	2	1	269	1	0	0	0	0	0	0	0	1	1501	933	33	2		2	BRCA2	13	32906983	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	6750928	32906983	82262895	176	17268											
BRCA2	675	bcgsc.ca	37	13	32913965	32913965	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	32913965	G	C	32913965	3	2	269	1	0	0	0	0	1	0	0	0	1501	1319	46	4	5511	4	BRCA2	13	32913965	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	6982	32913965	82255913	177	17269											
ELF1	1997	bcgsc.ca	37	13	41508016	41508016	+	Missense_Mutation	SNP	G	G	T	rs79846574		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	41508016	G	T	41508016	3	4	269	1	0	0	0	0	1	0	0	0	5055	1386	48	4	458	4	ELF1	13	41508016	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	8594051	41508016	73661862	178	17270											
AKAP11	11215	hgsc.bcm.edu	37	13	42876808	42876808	+	Missense_Mutation	SNP	T	T	G	rs201995333		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	42876808	T	G	42876808	3	3	269	1	0	0	0	0	1	0	0	0	447	1638	57	5	3948	5	AKAP11	13	42876808	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1368792	42876808	72293070	179	17271											
DIS3	22894	bcgsc.ca	37	13	73349455	73349455	+	Missense_Mutation	SNP	A	A	C	rs201006124		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	73349455	A	C	73349455	3	2	269	1	0	0	0	0	1	0	0	0	4537	159	6	5	2059	5	DIS3	13	73349455	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	30472647	73349455	41820423	180	17272											
COCH	1690	bcgsc.ca	37	14	31355025	31355025	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	31355025	C	T	31355025	2	4	269	1	0	0	0	0	0	0	0	1	3658	912	32	2		2	COCH	14	31355025	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08		31355025	75994515	181	17273											
PPM1A	5494	bcgsc.ca	37	14	60749549	60749549	+	Missense_Mutation	SNP	T	T	G	rs74713917		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	60749549	T	G	60749549	3	3	269	1	0	0	0	0	1	0	0	0	12345	1696	59	5	353	5	PPM1A	14	60749549	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	29394524	60749549	46599991	182	17274											
SYT16	83851	hgsc.bcm.edu	37	14	62463094	62463094	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	62463094	A	C	62463094	2	2	269	1	0	0	0	0	0	0	0	1	15484	117	5	5		5	SYT16	14	62463094	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1713545	62463094	44886446	183	17275											
AKAP5	9495	bcgsc.ca	37	14	64935947	64935947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	64935947	G	A	64935947	3	1	269	1	0	0	0	0	1	0	0	0	454	943	33	2	837	2	AKAP5	14	64935947	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	2472853	64935947	42413593	184	17276											
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95669398	95669398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	95669398	T	C	95669398	3	2	269	1	0	0	0	0	1	0	0	0	3544	1406	49	3	740	3	CLMN	14	95669398	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	30733451	95669398	11680142	185	17277											
AHNAK2	113146	ucsc.edu	37	14	105415291	105415291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	105415291	G	A	105415291	3	1	269	1	0	0	0	0	1	0	0	0	415	942	33	2	10894	2	AHNAK2	14	105415291	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	9745893	105415291	1934249	186	17278											
BMF	90427	bcgsc.ca	37	15	40396521	40396521	+	Missense_Mutation	SNP	G	G	A	rs77642791		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	40396521	G	A	40396521	3	1	269	1	0	0	0	0	1	0	0	0	1454	1174	41	2	249	2	BMF	15	40396521	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		40396521	62134871	187	17279											
TTBK2	146057	bcgsc.ca	37	15	43132600	43132600	+	Missense_Mutation	SNP	A	A	C	rs141523080		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	43132600	A	C	43132600	3	2	269	1	0	0	0	0	1	0	0	0	16689	157	6	5	3533	5	TTBK2	15	43132600	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2736079	43132600	59398792	188	17280											
ONECUT1	3175	broad.mit.edu	37	15	53081466	53081467	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	53081467	-	G	53081466	7	5	269	1	0	1	1	0	0	0	0	0	10875	768	27	0	789	0	ONECUT1	15	53081466	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	9948866	53081466	49449926	189	17281											
PYGO1	26108	bcgsc.ca	37	15	55838604	55838604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	55838604	C	T	55838604	3	4	269	1	0	0	0	0	1	0	0	0	12876	835	29	2	386	2	PYGO1	15	55838604	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	2757138	55838604	46692788	190	17282											
GCNT3	9245	bcgsc.ca	37	15	59911342	59911342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	59911342	C	T	59911342	3	4	269	1	0	0	0	0	1	0	0	0	6309	855	30	2	907	2	GCNT3	15	59911342	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	4072738	59911342	42620050	191	17283											
FBXO22	26263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	76196905	76196905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	76196905	G	A	76196905	3	1	269	1	0	0	0	0	1	0	0	0	5741	1000	35	2	220	2	FBXO22	15	76196905	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	16285563	76196905	26334487	192	17284											
MFGE8	4240	bcgsc.ca	37	15	89453134	89453135	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	89453135	-	G	89453134	7	5	269	1	0	1	1	0	0	0	0	0	9527	188	7	0	1097	0	MFGE8	15	89453134	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	13256229	89453134	13078258	193	17285											
SYNM	23336	ucsc.edu	37	15	99671486	99671486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	99671486	A	G	99671486	3	3	269	1	0	0	0	0	1	0	0	0	15467	304	11	3	2934	3	SYNM	15	99671486	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	10218352	99671486	2859906	194	17286											
BAIAP3	8938	hgsc.bcm.edu	37	16	1394683	1394683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	1394683	G	C	1394683	3	2	269	1	0	0	0	0	1	0	0	0	1304	1087	38	4	1920	4	BAIAP3	16	1394683	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		1394683	88960070	195	17287											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3808859	3808859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	3808859	A	G	3808859	3	3	269	1	0	0	0	0	1	0	0	0	3863	101	4	3	4023	3	CREBBP	16	3808859	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2414176	3808859	86545894	196	17288											
SETD1A	9739	broad.mit.edu	37	16	30974861	30974861	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	30974861	G	C	30974861	3	2	269	1	0	0	0	0	1	0	0	0	14143	1319	46	4	639	4	SETD1A	16	30974861	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	27166002	30974861	59379892	197	17289											
ITGAM	3684	hgsc.bcm.edu	37	16	31335785	31335785	+	Missense_Mutation	SNP	G	G	A	rs139908772		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	31335785	G	A	31335785	3	1	269	1	0	0	0	0	1	0	0	0	7894	1145	40	1	2137	1	ITGAM	16	31335785	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	360924	31335785	59018968	198	17290											
ARMC5	79798	hgsc.bcm.edu	37	16	31474046	31474046	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	31474046	C	G	31474046	3	3	269	1	0	0	0	0	1	0	0	0	954	739	26	4	1188	4	ARMC5	16	31474046	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	138261	31474046	58880707	199	17291											
LONP2	83752	bcgsc.ca	37	16	48286156	48286156	+	Silent	SNP	G	G	A	rs202207335		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	48286156	G	A	48286156	2	1	269	1	0	0	0	0	0	0	0	1	8900	933	33	2		2	LONP2	16	48286156	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	16812110	48286156	42068597	200	17292											
HERPUD1	9709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56970652	56970652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	56970652	G	T	56970652	3	4	269	1	0	0	0	0	1	0	0	0	7070	991	35	4	368	4	HERPUD1	16	56970652	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	8684496	56970652	33384101	201	17293											
SF3B3	23450	broad.mit.edu	37	16	70569300	70569300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	70569300	C	T	70569300	3	4	269	1	0	0	0	0	1	0	0	0	14165	652	23	1	820	1	SF3B3	16	70569300	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	13598648	70569300	19785453	202	17294											
MARVELD3	91862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71674415	71674415	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	71674415	T	A	71674415	3	1	269	1	0	0	0	0	1	0	0	0	9326	1522	53	5	1343	5	MARVELD3	16	71674415	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1105115	71674415	18680338	203	17295											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72984698	72984698	+	Silent	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	72984698	G	A	72984698	2	1	269	1	0	0	0	0	0	0	0	1	17646	1190	42	2		2	ZFHX3	16	72984698	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1310283	72984698	17370055	204	17296											
ANKRD11	29123	broad.mit.edu	37	16	89352564	89352565	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	89352565	-	C	89352564	7	5	269	1	0	1	1	0	0	0	0	0	639	1783	62	0	7240	0	ANKRD11	16	89352564	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	16367866	89352564	1002189	205	17297											
USP6	9098	hgsc.bcm.edu	37	17	5042939	5042939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	5042939	A	C	5042939	3	2	269	1	0	0	0	0	1	0	0	0	17098	159	6	5	1518	5	USP6	17	5042939	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		5042939	76152271	206	17298											
PER1	5187	hgsc.bcm.edu	37	17	8047043	8047043	+	Silent	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	8047043	T	G	8047043	2	3	269	1	0	0	0	0	0	0	0	1	11736	1683	59	5		5	PER1	17	8047043	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3004104	8047043	73148167	207	17299											
COX10	1352	hgsc.bcm.edu;bcgsc.ca	37	17	14110451	14110451	+	Missense_Mutation	SNP	A	A	C	rs200435051		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	14110451	A	C	14110451	3	2	269	1	0	0	0	0	1	0	0	0	3764	159	6	5	1279	5	COX10	17	14110451	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	6063408	14110451	67084759	208	17300											
WSB1	26118	bcgsc.ca	37	17	25639347	25639347	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	25639347	G	C	25639347	3	2	269	1	0	0	0	0	1	0	0	0	17416	962	34	4	1252	4	WSB1	17	25639347	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	11528896	25639347	55555863	209	17301											
ALDOC	230	bcgsc.ca	37	17	26900783	26900784	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	26900784	-	G	26900783	7	5	269	1	0	1	1	0	0	0	0	0	509	175	7	0	133	0	ALDOC	17	26900783	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	1261436	26900783	54294427	210	17302											
SLFN5	162394	bcgsc.ca	37	17	33586030	33586030	+	Silent	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	33586030	T	G	33586030	2	3	269	1	0	0	0	0	0	0	0	1	14750	1683	59	5		5	SLFN5	17	33586030	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	6685247	33586030	47609180	211	17303											
ACACA	31	bcgsc.ca	37	17	35445967	35445967	+	Missense_Mutation	SNP	C	C	T	rs199660893		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	35445967	C	T	35445967	3	4	269	1	0	0	0	0	1	0	0	0	106	922	32	2	225	2	ACACA	17	35445967	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1859937	35445967	45749243	212	17304											
KRTAP4-2	85291	hgsc.bcm.edu	37	17	39334233	39334233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	39334233	T	G	39334233	3	3	269	1	0	0	0	0	1	0	0	0	8558	1580	55	5	230	5	KRTAP4-2	17	39334233	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3888266	39334233	41860977	213	17305											
KRT9	3857	broad.mit.edu	37	17	39724451	39724451	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	39724451	T	G	39724451	3	3	269	1	0	0	0	0	1	0	0	0	8508	1667	58	5	522	5	KRT9	17	39724451	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	390218	39724451	41470759	214	17306											
FKBP10	60681	broad.mit.edu	37	17	39975558	39975559	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	39975559	-	C	39975558	7	5	269	1	0	1	1	0	0	0	0	0	5909	1551	54	0	842	0	FKBP10	17	39975558	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	251107	39975558	41219652	215	17307											
GHDC	84514	broad.mit.edu	37	17	40344321	40344322	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	40344322	-	C	40344321	7	5	269	1	0	1	1	0	0	0	0	0	6376	1203	42	0	878	0	GHDC	17	40344321	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	368763	40344321	40850889	216	17308			1	32		3	3	652	N	G_C_-	1.736442e-05
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40344945	40344945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	40344945	G	T	40344945	3	4	269	1	0	0	0	0	1	0	0	0	6376	1252	44	4	1343	4	GHDC	17	40344945	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	624	40344945	40850265	217	17309			1	32		3	3	652	N	G_C_-	1.736442e-05
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40344972	40344972	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	40344972	C	T	40344972	2	4	269	1	0	0	0	0	0	0	0	1	6376	796	28	2		2	GHDC	17	40344972	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	27	40344972	40850238	218	17310			1	32		3	3	652	N	G_C_-	1.736442e-05
BRCA1	672	bcgsc.ca	37	17	41197706	41197707	+	In_Frame_Ins	INS	-	-	GGGGGGGGT	rs138690298	bycluster;by1000genomes;alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	GGGGGGGGT	41197707	-	GGGGGGGGT	41197706	7	5	269	1	0	1	1	0	0	0	0	0	1500	1580	55	0	14	0	BRCA1	17	41197706	In_Frame_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	852734	41197706	39997504	219	17311											
WNT3	7473	bcgsc.ca	37	17	44851096	44851097	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	44851097	-	G	44851096	7	5	269	1	0	1	1	0	0	0	0	0	17400	768	27	0	819	0	WNT3	17	44851096	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	3653390	44851096	36344114	220	17312											
INTS2	57508	bcgsc.ca	37	17	59946430	59946430	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	59946430	C	G	59946430	3	3	269	1	0	0	0	0	1	0	0	0	7785	536	19	4	393	4	INTS2	17	59946430	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	15095334	59946430	21248780	221	17313											
COG1	9382	bcgsc.ca	37	17	71196858	71196858	+	Silent	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	71196858	G	A	71196858	2	1	269	1	0	0	0	0	0	0	0	1	3659	933	33	2		2	COG1	17	71196858	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	11250428	71196858	9998352	222	17314											
ITGB4	3691	hgsc.bcm.edu	37	17	73732406	73732406	+	Missense_Mutation	SNP	G	G	C	rs201929789		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	73732406	G	C	73732406	3	2	269	1	0	0	0	0	1	0	0	0	7904	1087	38	4	1853	4	ITGB4	17	73732406	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	2535548	73732406	7462804	223	17315											
SEPT9	10801	hgsc.bcm.edu	37	17	75488782	75488782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	75488782	T	G	75488782	3	3	269	1	0	0	0	0	1	0	0	0	14084	1696	59	5	1968	5	SEPT9	17	75488782	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1756376	75488782	5706428	224	17316											
PLEKHJ1	55111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2234038	2234038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	2234038	G	T	2234038	3	4	269	1	0	0	0	0	1	0	0	0	12086	1000	35	4	114	4	PLEKHJ1	19	2234038	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		2234038	56894945	225	17317											
TMIGD2	126259	bcgsc.ca	37	19	4294632	4294632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	4294632	G	C	4294632	3	2	269	1	0	0	0	0	1	0	0	0	16243	1087	38	4	362	4	TMIGD2	19	4294632	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	2060594	4294632	54834351	226	17318											
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5131903	5131903	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	5131903	G	C	5131903	2	2	269	1	0	0	0	0	0	0	0	1	8136	1132	40	4		4	KDM4B	19	5131903	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	837271	5131903	53997080	227	17319											
MUC16	94025	bcgsc.ca	37	19	9021175	9021175	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	9021175	G	C	9021175	3	2	269	1	0	0	0	0	1	0	0	0	9980	971	34	4	6639	4	MUC16	19	9021175	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3889272	9021175	50107808	228	17320											
ZNF559	84527	bcgsc.ca	37	19	9449897	9449897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	9449897	T	G	9449897	3	3	269	1	0	0	0	0	1	0	0	0	18002	1696	59	5	68	5	ZNF559	19	9449897	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	428722	9449897	49679086	229	17321											
ZNF426	79088	bcgsc.ca	37	19	9644614	9644614	+	Missense_Mutation	SNP	A	A	C	rs77003677		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	9644614	A	C	9644614	3	2	269	1	0	0	0	0	1	0	0	0	17912	159	6	5	1534	5	ZNF426	19	9644614	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	194717	9644614	49484369	230	17322											
MRI1	84245	hgsc.bcm.edu	37	19	13875777	13875777	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	13875777	C	T	13875777	2	4	269	1	0	0	0	0	0	0	0	1	9777	871	31	1		1	MRI1	19	13875777	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	4231163	13875777	45253206	231	17323											
OR10H2	26538	broad.mit.edu	37	19	15839311	15839311	+	Missense_Mutation	SNP	C	C	T	rs139469467		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	15839311	C	T	15839311	3	4	269	1	0	0	0	0	1	0	0	0	10913	893	31	1	460	1	OR10H2	19	15839311	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1963534	15839311	43289672	232	17324											
USE1	55850	bcgsc.ca	37	19	17330035	17330035	+	Missense_Mutation	SNP	T	T	C	rs201210102	byfrequency;alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	17330035	T	C	17330035	3	2	269	1	0	0	0	0	1	0	0	0	17043	1667	58	3	462	3	USE1	19	17330035	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1490724	17330035	41798948	233	17325											
LRRC25	126364	broad.mit.edu	37	19	18507298	18507298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	18507298	G	T	18507298	3	4	269	1	0	0	0	0	1	0	0	0	8987	1000	35	4	449	4	LRRC25	19	18507298	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1177263	18507298	40621685	234	17326											
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34921484	34921484	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	34921484	G	C	34921484	3	2	269	1	0	0	0	0	1	0	0	0	16840	1290	45	4	148	4	UBA2	19	34921484	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	16414186	34921484	24207499	235	17327											
KIRREL2	84063	bcgsc.ca	37	19	36353426	36353426	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	36353426	A	G	36353426	2	3	269	1	0	0	0	0	0	0	0	1	8332	291	11	3		3	KIRREL2	19	36353426	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1431942	36353426	22775557	236	17328											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39039030	39039030	+	Silent	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	39039030	T	C	39039030	2	2	269	1	0	0	0	0	0	0	0	1	13781	1683	59	3		3	RYR1	19	39039030	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	2685604	39039030	20089953	237	17329											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40366038	40366038	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	40366038	C	G	40366038	2	3	269	1	0	0	0	0	0	0	0	1	5785	639	23	4		4	FCGBP	19	40366038	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1327008	40366038	18762945	238	17330											
ZNF227	7770	bcgsc.ca	37	19	44732627	44732627	+	Missense_Mutation	SNP	T	T	G	rs77864769		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	44732627	T	G	44732627	3	3	269	1	0	0	0	0	1	0	0	0	17793	1696	59	5	95	5	ZNF227	19	44732627	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	4366589	44732627	14396356	239	17331											
FOSB	2354	bcgsc.ca	37	19	45974012	45974013	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	45974013	-	C	45974012	7	5	269	1	0	1	1	0	0	0	0	0	5993	1190	42	0	258	0	FOSB	19	45974012	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	1241385	45974012	13154971	240	17332											
NUCB1	4924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49422348	49422348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	49422348	G	A	49422348	3	1	269	1	0	0	0	0	1	0	0	0	10725	1058	37	1	908	1	NUCB1	19	49422348	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3448336	49422348	9706635	241	17333											
NUP62	23636	bcgsc.ca	37	19	50411672	50411673	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	50411673	-	G	50411672	7	5	269	1	0	1	1	0	0	0	0	0	10775	768	27	0	179	0	NUP62	19	50411672	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	989324	50411672	8717311	242	17334											
VRK3	51231	bcgsc.ca	37	19	50493004	50493004	+	Missense_Mutation	SNP	C	C	G	rs200282632		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	50493004	C	G	50493004	3	3	269	1	0	0	0	0	1	0	0	0	17233	768	27	4	452	4	VRK3	19	50493004	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	81332	50493004	8635979	243	17335											
ZNF649	65251	bcgsc.ca	37	19	52400203	52400203	+	Missense_Mutation	SNP	A	A	C	rs149586071		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	52400203	A	C	52400203	3	2	269	1	0	0	0	0	1	0	0	0	18076	159	6	5	1485	5	ZNF649	19	52400203	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1907199	52400203	6728780	244	17336											
ZNF614	80110	bcgsc.ca	37	19	52521719	52521719	+	Missense_Mutation	SNP	A	A	C	rs76388547		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	52521719	A	C	52521719	3	2	269	1	0	0	0	0	1	0	0	0	18051	159	6	5	1725	5	ZNF614	19	52521719	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	121516	52521719	6607264	245	17337											
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53668284	53668284	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	53668284	T	A	53668284	4	1	269	1	0	0	0	0	0	1	0	0	18085	1821	63	5	581	5	ZNF665	19	53668284	Nonsense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1146565	53668284	5460699	246	17338											
LILRB2	10288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54783677	54783677	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	54783677	C	T	54783677	2	4	269	1	0	0	0	0	0	0	0	1	8798	796	28	2		2	LILRB2	19	54783677	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1115393	54783677	4345306	247	17339											
NLRP8	126205	bcgsc.ca	37	19	56490765	56490765	+	Missense_Mutation	SNP	A	A	G	rs77160817		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	56490765	A	G	56490765	3	3	269	1	0	0	0	0	1	0	0	0	10490	246	9	3	2916	3	NLRP8	19	56490765	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1707088	56490765	2638218	248	17340											
ZNF71	58491	hgsc.bcm.edu	37	19	57133670	57133670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	57133670	T	G	57133670	3	3	269	1	0	0	0	0	1	0	0	0	18126	1551	54	5	1017	5	ZNF71	19	57133670	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	642905	57133670	1995313	249	17341											
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13695769	13695769	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	13695769	A	T	13695769	3	4	269	1	0	0	0	0	1	0	0	0	5253	69	3	5	251	5	ESF1	20	13695769	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		13695769	49329751	250	17342											
RALGAPA2	57186	bcgsc.ca	37	20	20501647	20501647	+	Missense_Mutation	SNP	A	A	G	rs77346211		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	20501647	A	G	20501647	3	3	269	1	0	0	0	0	1	0	0	0	13027	246	9	3	1659	3	RALGAPA2	20	20501647	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	6805878	20501647	42523873	251	17343											
AHCY	191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	32868894	32868914	+	In_Frame_Del	DEL	CTGGGCTTGCTTCTCAGTTAG	CTGGGCTTGCTTCTCAGTTAG	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	CTGGGCTTGCTTCTCAGTTAG	CTGGGCTTGCTTCTCAGTTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	-	32868914	CTGGGCTTGCTTCTCAGTTAG	-	32868894	7	5	269	1	0	1	0	1	0	0	0	0	409	564	20	0	57	0	AHCY	20	32868894	In_Frame_Del	DEL	CTGGGCTTGCTTCTCAGTTAG	TCGA-B9-4117-01A-01D-1252-08	12367247	32868894	30156626	252	17344											
ZSWIM1	90204	hgsc.bcm.edu	37	20	44512073	44512073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	44512073	C	T	44512073	3	4	269	1	0	0	0	0	1	0	0	0	18252	913	32	2	844	2	ZSWIM1	20	44512073	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	11643179	44512073	18513447	253	17345											
GRIK1	2897	hgsc.bcm.edu	37	21	30927529	30927529	+	Missense_Mutation	SNP	A	A	C	rs201323952	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	30927529	A	C	30927529	3	2	269	1	0	0	0	0	1	0	0	0	6780	214	8	5	473	5	GRIK1	21	30927529	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		30927529	17202366	254	17346											
KRTAP22-1	337979	bcgsc.ca	37	21	31973511	31973511	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	31973511	T	G	31973511	3	3	269	1	0	0	0	0	1	0	0	0	8547	1702	59	5	74	5	KRTAP22-1	21	31973511	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1045982	31973511	16156384	255	17347											
SLC5A3	6526	bcgsc.ca	37	21	35468406	35468406	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	35468406	C	G	35468406	2	3	269	1	0	0	0	0	0	0	0	1	14679	784	28	4		4	SLC5A3	21	35468406	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	3494895	35468406	12661489	256	17348											
CABIN1	23523	ucsc.edu	37	22	24494089	24494089	+	Missense_Mutation	SNP	A	A	C	rs77920906		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	24494089	A	C	24494089	3	2	269	1	0	0	0	0	1	0	0	0	2530	159	6	5	4149	5	CABIN1	22	24494089	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		24494089	26810477	257	17349											
NEFH	4744	broad.mit.edu	37	22	29885754	29885777	+	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGAAGAAGCA	AAGTCCCCAGTGAAGGAAGAAGCA	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	AAGTCCCCAGTGAAGGAAGAAGCA	AAGTCCCCAGTGAAGGAAGAAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	-	29885777	AAGTCCCCAGTGAAGGAAGAAGCA	-	29885754	7	5	269	1	0	1	0	1	0	0	0	0	10321	131	5	0	2139	0	NEFH	22	29885754	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGAAGAAGCA	TCGA-B9-4117-01A-01D-1252-08	5391665	29885754	21418812	258	17350											
NF2	4771	hgsc.bcm.edu	37	22	30000103	30000103	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	30000103	T	G	30000103	5	3	269	1	0	0	0	0	0	0	1	0	10364	1652	57	5	118	5	NF2	22	30000103	Splice_Site	SNP	T	TCGA-B9-4117-01A-01D-1252-08	114349	30000103	21304463	259	17351											
ADSL	158	bcgsc.ca	37	22	40750276	40750276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	T	40750276	G	T	40750276	3	4	269	1	0	0	0	0	1	0	0	0	346	1319	46	4	441	4	ADSL	22	40750276	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	10750173	40750276	10554290	260	17352											
EP300	2033	broad.mit.edu	37	22	41543893	41543893	+	Silent	SNP	G	G	A	rs187938527	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	41543893	G	A	41543893	2	1	269	1	0	0	0	0	0	0	0	1	5150	1190	42	2		2	EP300	22	41543893	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	793617	41543893	9760673	261	17353											
GLRA2	2742	bcgsc.ca	37	X	14599357	14599357	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	14599357	C	G	14599357	3	3	269	1	0	0	0	0	1	0	0	0	6462	768	27	4	409	4	GLRA2	23	14599357	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08		14599357	140671203	262	17354											
CDKL5	6792	hgsc.bcm.edu	37	X	18646492	18646492	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	18646492	G	C	18646492	3	2	269	1	0	0	0	0	1	0	0	0	3159	985	34	4	2564	4	CDKL5	23	18646492	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	4047135	18646492	136624068	263	17355											
DMD	1756	bcgsc.ca	37	X	31854856	31854856	+	Missense_Mutation	SNP	T	T	G	rs202090289		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	31854856	T	G	31854856	3	3	269	1	0	0	0	0	1	0	0	0	4582	1722	60	5	4150	5	DMD	23	31854856	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	13208364	31854856	123415704	264	17356											
RPGR	6103	hgsc.bcm.edu	37	X	38145451	38145451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	38145451	T	C	38145451	3	2	269	1	0	0	0	0	1	0	0	0	13561	1551	54	3	1220	3	RPGR	23	38145451	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	6290595	38145451	117125109	265	17357											
MAOA	4128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	43590945	43590945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	43590945	A	C	43590945	3	2	269	1	0	0	0	0	1	0	0	0	9232	14	1	5	830	5	MAOA	23	43590945	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	5445494	43590945	111679615	266	17358											
NDUFB11	54539	broad.mit.edu;bcgsc.ca	37	X	47002143	47002143	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	47002143	T	G	47002143	3	3	269	1	0	0	0	0	1	0	0	0	10287	1797	62	5	291	5	NDUFB11	23	47002143	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3411198	47002143	108268417	267	17359											
GNL3L	54552	hgsc.bcm.edu	37	X	54578752	54578752	+	Silent	SNP	A	A	C	rs201849856		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	54578752	A	C	54578752	2	2	269	1	0	0	0	0	0	0	0	1	6545	146	6	5		5	GNL3L	23	54578752	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7576609	54578752	100691808	268	17360											
APEX2	27301	broad.mit.edu	37	X	55033524	55033525	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	A	55033525	-	A	55033524	7	5	269	1	0	1	1	0	0	0	0	0	770	595	21	0	1235	0	APEX2	23	55033524	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	454772	55033524	100237036	269	17361											
NLGN3	54413	hgsc.bcm.edu	37	X	70387444	70387444	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	70387444	G	C	70387444	2	2	269	1	0	0	0	0	0	0	0	1	10470	1074	38	4		4	NLGN3	23	70387444	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	15353920	70387444	84883116	270	17362											
NOX1	27035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100099033	100099033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	100099033	T	C	100099033	3	2	269	1	0	0	0	0	1	0	0	0	10563	1667	58	3	95	3	NOX1	23	100099033	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	29711589	100099033	55171527	271	17363											
RNF128	79589	broad.mit.edu	37	X	105970391	105970391	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	105970391	T	G	105970391	3	3	269	1	0	0	0	0	1	0	0	0	13449	1667	58	5	660	5	RNF128	23	105970391	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	5871358	105970391	49300169	272	17364											
NXT2	55916	bcgsc.ca	37	X	108779193	108779193	+	Missense_Mutation	SNP	A	A	C	rs201184200		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	108779193	A	C	108779193	3	2	269	1	0	0	0	0	1	0	0	0	10802	159	6	5	84	5	NXT2	23	108779193	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2808802	108779193	46491367	273	17365											
DOCK11	139818	bcgsc.ca	37	X	117761500	117761500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	117761500	T	C	117761500	3	2	269	1	0	0	0	0	1	0	0	0	4688	1783	62	3	3752	3	DOCK11	23	117761500	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8982307	117761500	37509060	274	17366											
UTP14A	10813	broad.mit.edu	37	X	129045830	129045831	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	129045831	-	G	129045830	7	5	269	1	0	1	1	0	0	0	0	0	17107	1580	55	0	492	0	UTP14A	23	129045830	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	11284330	129045830	26224730	275	17367											
BCORL1	63035	broad.mit.edu	37	X	129146953	129146954	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	129146954	-	G	129146953	7	5	269	1	0	1	1	0	0	0	0	0	1387	188	7	0	215	0	BCORL1	23	129146953	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	101123	129146953	26123607	276	17368											
AIFM1	9131	bcgsc.ca	37	X	129270135	129270135	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	129270135	G	C	129270135	3	2	269	1	0	0	0	0	1	0	0	0	426	971	34	4	671	4	AIFM1	23	129270135	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	123182	129270135	26000425	277	17369											
FRMD7	90167	bcgsc.ca	37	X	131219749	131219749	+	Missense_Mutation	SNP	T	T	C	rs201803600		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	131219749	T	C	131219749	3	2	269	1	0	0	0	0	1	0	0	0	6062	1551	54	3	1663	3	FRMD7	23	131219749	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1949614	131219749	24050811	278	17370											
GPC4	2239	bcgsc.ca	37	X	132437060	132437060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	132437060	A	C	132437060	3	2	269	1	0	0	0	0	1	0	0	0	6607	157	6	5	168	5	GPC4	23	132437060	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1217311	132437060	22833500	279	17371											
SAGE1	55511	bcgsc.ca	37	X	134990742	134990742	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	134990742	A	G	134990742	2	3	269	1	0	0	0	0	0	0	0	1	13822	291	11	3		3	SAGE1	23	134990742	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2553682	134990742	20279818	280	17372											
CNGA2	1260	hgsc.bcm.edu	37	X	150906986	150906986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	C	150906986	T	C	150906986	3	2	269	1	0	0	0	0	1	0	0	0	3599	1551	54	3	33	3	CNGA2	23	150906986	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	15916244	150906986	4363574	281	17373											
PLXNA3	55558	broad.mit.edu	37	X	153688565	153688565	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	-	153688565	G	-	153688565	7	5	269	1	0	1	0	1	0	0	0	0	12128	1335	47	0	44	0	PLXNA3	23	153688565	Frame_Shift_Del	DEL	G	TCGA-B9-4117-01A-01D-1252-08	2781579	153688565	1581995	282	17374											
F8	2157	bcgsc.ca	37	X	154124444	154124444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	G	154124444	A	G	154124444	3	3	269	1	0	0	0	0	1	0	0	0	5352	304	11	3	766	3	F8	23	154124444	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	435879	154124444	1146116	283	17375											
TMEM82	388595	hgsc.bcm.edu	37	1	16070782	16070782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	16070782	T	G	16070782	3	3	270	1	0	0	0	0	1	0	0	0	16218	1580	55	5	478	5	TMEM82	1	16070782	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08		16070782	233179839	1	17376											
ARHGEF19	128272	broad.mit.edu;ucsc.edu	37	1	16532837	16532837	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	16532837	T	G	16532837	5	3	270	1	0	0	0	0	0	0	1	0	902	1594	55	5	1312	5	ARHGEF19	1	16532837	Splice_Site	SNP	T	TCGA-B9-5156-01A-01D-1589-08	462055	16532837	232717784	2	17377											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19166252	19166252	+	Silent	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	19166252	C	G	19166252	2	3	270	1	0	0	0	0	0	0	0	1	15575	581	21	4		4	TAS1R2	1	19166252	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	2633415	19166252	230084369	3	17378											
UROD	7389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45478626	45478626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	45478626	C	T	45478626	3	4	270	1	0	0	0	0	1	0	0	0	17041	739	26	2	74	2	UROD	1	45478626	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	26312374	45478626	203771995	4	17379											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144915498	144915498	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	-	144915498	T	-	144915498	7	5	270	1	0	1	0	1	0	0	0	0	11650	1493	52	0	5247	0	PDE4DIP	1	144915498	Frame_Shift_Del	DEL	T	TCGA-B9-5156-01A-01D-1589-08	99436872	144915498	104335123	5	17380											
PDZK1	5174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145752477	145752477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	145752477	G	T	145752477	3	4	270	1	0	0	0	0	1	0	0	0	11714	1290	45	4	520	4	PDZK1	1	145752477	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	836979	145752477	103498144	6	17381											
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150390094	150390094	+	Silent	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	150390094	T	C	150390094	2	2	270	1	0	0	0	0	0	0	0	1	13630	1432	50	3		3	RPRD2	1	150390094	Silent	SNP	T	TCGA-B9-5156-01A-01D-1589-08	4637617	150390094	98860527	7	17382											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151395875	151395875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	151395875	G	T	151395875	3	4	270	1	0	0	0	0	1	0	0	0	12193	1029	36	4	2596	4	POGZ	1	151395875	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	1005781	151395875	97854746	8	17383											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186158954	186158954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	186158954	A	G	186158954	3	3	270	1	0	0	0	0	1	0	0	0	7227	217	8	3	17278	3	HMCN1	1	186158954	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	34763079	186158954	63091667	9	17384											
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204588079	204588079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	204588079	T	C	204588079	3	2	270	1	0	0	0	0	1	0	0	0	9042	1580	55	3	1103	3	LRRN2	1	204588079	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	18429125	204588079	44662542	10	17385											
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229771856	229771856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	229771856	C	T	229771856	3	4	270	1	0	0	0	0	1	0	0	0	17037	913	32	2	1506	2	URB2	1	229771856	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	25183777	229771856	19478765	11	17386											
CPSF3	51692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	9570989	9570994	+	In_Frame_Del	DEL	TTCTGA	TTCTGA	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TTCTGA	TTCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	-	9570994	TTCTGA	-	9570989	7	5	270	1	0	1	0	1	0	0	0	0	3828	1828	64	0	335	0	CPSF3	2	9570989	In_Frame_Del	DEL	TTCTGA	TCGA-B9-5156-01A-01D-1589-08		9570989	233628384	12	17387											
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44507998	44507998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	44507998	G	T	44507998	3	4	270	1	0	0	0	0	1	0	0	0	14639	942	33	4	580	4	SLC3A1	2	44507998	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	34937009	44507998	198691375	13	17388											
PNPT1	87178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55908004	55908004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	55908004	A	G	55908004	3	3	270	1	0	0	0	0	1	0	0	0	12180	420	15	3	1940	3	PNPT1	2	55908004	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	11400006	55908004	187291369	14	17389											
FANCL	55120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	58431304	58431304	+	Silent	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	58431304	A	G	58431304	2	3	270	1	0	0	0	0	0	0	0	1	5677	175	7	3		3	FANCL	2	58431304	Silent	SNP	A	TCGA-B9-5156-01A-01D-1589-08	2523300	58431304	184768069	15	17390											
TET3	200424	hgsc.bcm.edu	37	2	74275021	74275021	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	74275021	C	T	74275021	2	4	270	1	0	0	0	0	0	0	0	1	15783	610	22	2		2	TET3	2	74275021	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	15843717	74275021	168924352	16	17391											
THNSL2	55258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	88482283	88482283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	88482283	A	G	88482283	3	3	270	1	0	0	0	0	1	0	0	0	15875	217	8	3	886	3	THNSL2	2	88482283	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	14207262	88482283	154717090	17	17392											
TRIM43	129868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96260855	96260855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	96260855	A	T	96260855	3	4	270	1	0	0	0	0	1	0	0	0	16530	14	1	5	475	5	TRIM43	2	96260855	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	7778572	96260855	146938518	18	17393											
DARS	1615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	136673870	136673871	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	136673871	-	A	136673870	7	5	270	1	0	1	1	0	0	0	0	0	4243	1741	61	0	497	0	DARS	2	136673870	Frame_Shift_Ins	INS	-	TCGA-B9-5156-01A-01D-1589-08	40413015	136673870	106525503	19	17394											
ZEB2	9839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	145156027	145156027	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	145156027	G	A	145156027	2	1	270	1	0	0	0	0	0	0	0	1	17636	1281	45	2		2	ZEB2	2	145156027	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	8482157	145156027	98043346	20	17395											
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170843265	170843265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	170843265	C	G	170843265	3	3	270	1	0	0	0	0	1	0	0	0	16915	876	31	4	3843	4	UBR3	2	170843265	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	25687238	170843265	72356108	21	17396											
DYTN	391475	hgsc.bcm.edu	37	2	207564616	207564616	+	Splice_Site	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	207564616	T	C	207564616	5	2	270	1	0	0	0	0	0	0	1	0	4863	1594	55	3	1206	3	DYTN	2	207564616	Splice_Site	SNP	T	TCGA-B9-5156-01A-01D-1589-08	36721351	207564616	35634757	22	17397											
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241468551	241468551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	241468551	T	G	241468551	3	3	270	1	0	0	0	0	1	0	0	0	634	1812	63	5	2292	5	ANKMY1	2	241468551	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	33903935	241468551	1730822	23	17398											
EXOSC7	23016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45038724	45038724	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	45038724	G	C	45038724	3	2	270	1	0	0	0	0	1	0	0	0	5321	1261	44	4	414	4	EXOSC7	3	45038724	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		45038724	152983706	24	17399											
ROBO1	6091	broad.mit.edu;ucsc.edu	37	3	78735047	78735047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	78735047	T	A	78735047	3	1	270	1	0	0	0	0	1	0	0	0	13526	1722	60	5	3852	5	ROBO1	3	78735047	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	33696323	78735047	119287383	25	17400											
OR5H1	26341	broad.mit.edu	37	3	97852336	97852336	+	Silent	SNP	G	G	A	rs138973744		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	97852336	G	A	97852336	2	1	270	1	0	0	0	0	0	0	0	1	11166	1074	38	1		1	OR5H1	3	97852336	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	19117289	97852336	100170094	26	17401											
BOC	91653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112991328	112991328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	112991328	A	C	112991328	3	2	270	1	0	0	0	0	1	0	0	0	1481	304	11	5	757	5	BOC	3	112991328	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	15138992	112991328	85031102	27	17402											
RPN1	6184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	128348859	128348859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	128348859	C	T	128348859	3	4	270	1	0	0	0	0	1	0	0	0	13620	739	26	2	876	2	RPN1	3	128348859	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	15357531	128348859	69673571	28	17403											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142268491	142268491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	142268491	C	A	142268491	3	1	270	1	0	0	0	0	1	0	0	0	1204	826	29	4	5065	4	ATR	3	142268491	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	13919632	142268491	55753939	29	17404											
SH3TC1	54436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	8229750	8229752	+	In_Frame_Del	DEL	ACC	ACC	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	ACC	ACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	-	8229752	ACC	-	8229750	7	5	270	1	0	1	0	1	0	0	0	0	14274	275	10	0	2371	0	SH3TC1	4	8229750	In_Frame_Del	DEL	ACC	TCGA-B9-5156-01A-01D-1589-08		8229750	182924526	30	17405											
FBXL5	26234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	15640266	15640266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	15640266	T	C	15640266	3	2	270	1	0	0	0	0	1	0	0	0	5729	1406	49	3	1659	3	FBXL5	4	15640266	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	7410516	15640266	175514010	31	17406											
GC	2638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	72620174	72620174	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	72620174	G	A	72620174	2	1	270	1	0	0	0	0	0	0	0	1	6289	1020	36	2		2	GC	4	72620174	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	56979908	72620174	118534102	32	17407											
USO1	8615	broad.mit.edu;ucsc.edu	37	4	76703850	76703850	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	76703850	T	A	76703850	3	1	270	1	0	0	0	0	1	0	0	0	17051	1812	63	5	569	5	USO1	4	76703850	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	4083676	76703850	114450426	33	17408											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	104041471	104041471	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	-	104041471	T	-	104041471	7	5	270	1	0	1	0	1	0	0	0	0	3232	1493	52	0	966	0	CENPE	4	104041471	Frame_Shift_Del	DEL	T	TCGA-B9-5156-01A-01D-1589-08	27337621	104041471	87112805	34	17409											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	151827133	151827134	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	151827134	-	T	151827133	7	5	270	1	0	1	1	0	0	0	0	0	8938	333	12	0	7163	0	LRBA	4	151827133	Frame_Shift_Ins	INS	-	TCGA-B9-5156-01A-01D-1589-08	47785662	151827133	39327143	35	17410											
TERT	7015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1282605	1282605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	1282605	T	G	1282605	3	3	270	1	0	0	0	0	1	0	0	0	15776	1850	64	5	1746	5	TERT	5	1282605	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08		1282605	179632655	36	17411											
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31323226	31323226	+	Silent	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	31323226	T	G	31323226	2	3	270	1	0	0	0	0	0	0	0	1	3116	1567	55	5		5	CDH6	5	31323226	Silent	SNP	T	TCGA-B9-5156-01A-01D-1589-08	30040621	31323226	149592034	37	17412											
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	114515696	114515696	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	114515696	G	A	114515696	2	1	270	1	0	0	0	0	0	0	0	1	16522	1280	45	2		2	TRIM36	5	114515696	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	83192470	114515696	66399564	38	17413											
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140712438	140712438	+	Silent	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	140712438	A	G	140712438	2	3	270	1	0	0	0	0	0	0	0	1	11557	291	11	3		3	PCDHGA1	5	140712438	Silent	SNP	A	TCGA-B9-5156-01A-01D-1589-08	26196742	140712438	40202822	39	17414											
LARS	51520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145506033	145506033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	145506033	T	C	145506033	3	2	270	1	0	0	0	0	1	0	0	0	8641	1464	51	3	594	3	LARS	5	145506033	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	4793595	145506033	35409227	40	17415											
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149511592	149511592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	149511592	G	T	149511592	3	4	270	1	0	0	0	0	1	0	0	0	11669	1203	42	4	2191	4	PDGFRB	5	149511592	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	4005559	149511592	31403668	41	17416											
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176824798	176824800	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	-	176824800	CTT	-	176824798	7	5	270	1	0	1	0	1	0	0	0	0	14580	564	20	0	1568	0	SLC34A1	5	176824798	In_Frame_Del	DEL	CTT	TCGA-B9-5156-01A-01D-1589-08	27313206	176824798	4090462	42	17417											
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4032504	4032504	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	4032504	A	C	4032504	3	2	270	1	0	0	0	0	1	0	0	0	12583	11	1	5	759	5	PRPF4B	6	4032504	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08		4032504	167082563	43	17418											
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30954340	30954340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	30954340	A	T	30954340	3	4	270	1	0	0	0	0	1	0	0	0	9984	188	7	5	394	5	MUC21	6	30954340	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	26921836	30954340	140160727	44	17419											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51889440	51889440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	51889440	C	G	51889440	3	3	270	1	0	0	0	0	1	0	0	0	11978	913	32	4	7239	4	PKHD1	6	51889440	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	20935100	51889440	119225627	45	17420											
LIMK1	3984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73530183	73530183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	73530183	G	A	73530183	3	1	270	1	0	0	0	0	1	0	0	0	8808	1059	37	1	1512	1	LIMK1	7	73530183	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		73530183	85608480	46	17421											
STYXL1	51657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75633079	75633079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	75633079	T	C	75633079	3	2	270	1	0	0	0	0	1	0	0	0	15373	1464	51	3	259	3	STYXL1	7	75633079	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	2102896	75633079	83505584	47	17422											
STYXL1	51657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75643205	75643205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	75643205	T	C	75643205	3	2	270	1	0	0	0	0	1	0	0	0	15373	1449	50	3	653	3	STYXL1	7	75643205	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	10126	75643205	83495458	48	17423											
ZNF3	7551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99669265	99669266	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	99669266	-	C	99669265	7	5	270	1	0	1	1	0	0	0	0	0	17841	1551	54	0	631	0	ZNF3	7	99669265	Frame_Shift_Ins	INS	-	TCGA-B9-5156-01A-01D-1589-08	24026060	99669265	59469398	49	17424											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu	37	7	107836289	107836289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	107836289	G	T	107836289	3	4	270	1	0	0	0	0	1	0	0	0	10651	1319	46	4	2641	4	NRCAM	7	107836289	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	8167024	107836289	51302374	50	17425											
ZNF786	136051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148767681	148767681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	148767681	G	T	148767681	3	4	270	1	0	0	0	0	1	0	0	0	18170	1232	43	4	169	4	ZNF786	7	148767681	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	40931392	148767681	10370982	51	17426											
GIMAP6	474344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150325338	150325338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	150325338	G	A	150325338	3	1	270	1	0	0	0	0	1	0	0	0	6390	1048	37	1	534	1	GIMAP6	7	150325338	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	1557657	150325338	8813325	52	17427											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52336162	52336162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	52336162	C	G	52336162	3	3	270	1	0	0	0	0	1	0	0	0	12861	478	17	4	2663	4	PXDNL	8	52336162	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08		52336162	94027860	53	17428											
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	94797545	94797546	+	Missense_Mutation	DNP	TA	TA	CT	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	CT	94797546	TA	CT	94797545	3	2	270	1	0	0	0	0	1	0	0	0	16208	1413	49	3	1411	3	TMEM67	8	94797545	Missense_Mutation	DNP	TA	TCGA-B9-5156-01A-01D-1589-08	42461383	94797545	51566477	54	17429											
DMRT2	10655	hgsc.bcm.edu	37	9	1051930	1051930	+	Missense_Mutation	SNP	C	C	G	rs112585712		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	1051930	C	G	1051930	3	3	270	1	0	0	0	0	1	0	0	0	4588	565	20	4	319	4	DMRT2	9	1051930	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08		1051930	140161501	55	17430											
TOR1A	1861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132576423	132576423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	132576423	T	G	132576423	3	3	270	1	0	0	0	0	1	0	0	0	16383	1696	59	5	175	5	TOR1A	9	132576423	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	131524493	132576423	8637008	56	17431											
FUT7	2529	broad.mit.edu	37	9	139925712	139925712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	139925712	C	A	139925712	3	1	270	1	0	0	0	0	1	0	0	0	6116	595	21	4	553	4	FUT7	9	139925712	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	7349289	139925712	1287719	57	17432											
WNT8B	7479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102239758	102239758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	102239758	G	A	102239758	3	1	270	1	0	0	0	0	1	0	0	0	17409	1232	43	2	240	2	WNT8B	10	102239758	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		102239758	33294989	58	17433											
NLRP14	338323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	7064099	7064099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	7064099	A	C	7064099	3	2	270	1	0	0	0	0	1	0	0	0	10483	130	5	5	852	5	NLRP14	11	7064099	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08		7064099	127942417	59	17434											
MADD	8567	hgsc.bcm.edu	37	11	47346058	47346058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	47346058	T	C	47346058	3	2	270	1	0	0	0	0	1	0	0	0	9159	1580	55	3	4778	3	MADD	11	47346058	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	40281959	47346058	87660458	60	17435											
PRPF19	27339	hgsc.bcm.edu	37	11	60670932	60670932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	60670932	C	A	60670932	3	1	270	1	0	0	0	0	1	0	0	0	12574	608	21	4	1325	4	PRPF19	11	60670932	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	13324874	60670932	74335584	61	17436											
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu	37	11	76062971	76062971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	76062971	A	T	76062971	3	4	270	1	0	0	0	0	1	0	0	0	12536	72	3	5	1066	5	PRKRIR	11	76062971	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	15392039	76062971	58943545	62	17437											
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	85445140	85445140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	85445140	A	T	85445140	3	4	270	1	0	0	0	0	1	0	0	0	15495	217	8	5	4108	5	SYTL2	11	85445140	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	9382169	85445140	49561376	63	17438											
ADAMTS8	11095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	130284505	130284505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	130284505	G	T	130284505	3	4	270	1	0	0	0	0	1	0	0	0	272	971	34	4	1202	4	ADAMTS8	11	130284505	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	44839365	130284505	4722011	64	17439											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26553127	26553127	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	26553127	G	A	26553127	2	1	270	1	0	0	0	0	0	0	0	1	7928	1103	39	1		1	ITPR2	12	26553127	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08		26553127	107298768	65	17440											
TMBIM6	7009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50149442	50149442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	50149442	T	C	50149442	3	2	270	1	0	0	0	0	1	0	0	0	15995	1551	54	3	378	3	TMBIM6	12	50149442	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	23596315	50149442	83702453	66	17441											
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53824991	53824991	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	53824991	G	C	53824991	3	2	270	1	0	0	0	0	1	0	0	0	573	942	33	4	1498	4	AMHR2	12	53824991	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	3675549	53824991	80026904	67	17442											
WSCD2	9671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108641980	108641980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	108641980	C	T	108641980	3	4	270	1	0	0	0	0	1	0	0	0	17419	768	27	1	1588	1	WSCD2	12	108641980	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	54816989	108641980	25209915	68	17443											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39452997	39452997	+	Silent	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	39452997	C	G	39452997	2	3	270	1	0	0	0	0	0	0	0	1	6052	581	21	4		4	FREM2	13	39452997	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08		39452997	75716881	69	17444											
ANKRD10	55608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	111532214	111532214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	111532214	A	T	111532214	3	4	270	1	0	0	0	0	1	0	0	0	638	159	6	5	233	5	ANKRD10	13	111532214	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	72079217	111532214	3637664	70	17445											
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23862897	23862897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	23862897	T	G	23862897	3	3	270	1	0	0	0	0	1	0	0	0	10045	1551	54	5	2985	5	MYH6	14	23862897	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08		23862897	83486643	71	17446											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23897724	23897724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	23897724	A	C	23897724	3	2	270	1	0	0	0	0	1	0	0	0	10046	126	5	5	4348	5	MYH7	14	23897724	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	34827	23897724	83451816	72	17447											
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24805465	24805465	+	Silent	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	24805465	G	T	24805465	2	4	270	1	0	0	0	0	0	0	0	1	13395	1219	43	4		4	RIPK3	14	24805465	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	907741	24805465	82544075	73	17448											
SEC23A	10484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	39524378	39524378	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	39524378	A	T	39524378	3	4	270	1	0	0	0	0	1	0	0	0	14004	72	3	5	697	5	SEC23A	14	39524378	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	14718913	39524378	67825162	74	17449											
HERC2	8924	broad.mit.edu	37	15	28460930	28460930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	28460930	A	C	28460930	3	2	270	1	0	0	0	0	1	0	0	0	7065	159	6	5	8677	5	HERC2	15	28460930	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08		28460930	74070462	75	17450											
NR2E3	10002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	72104834	72104834	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	72104834	C	T	72104834	2	4	270	1	0	0	0	0	0	0	0	1	10633	680	24	2		2	NR2E3	15	72104834	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	43643904	72104834	30426558	76	17451											
CHTF18	63922	broad.mit.edu;ucsc.edu	37	16	842454	842454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	842454	C	G	842454	3	3	270	1	0	0	0	0	1	0	0	0	3416	681	24	4	1384	4	CHTF18	16	842454	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08		842454	89512299	77	17452											
MAPK8IP3	23162	broad.mit.edu	37	16	1815160	1815160	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	1815160	G	A	1815160	2	1	270	1	0	0	0	0	0	0	0	1	9293	1364	48	2		2	MAPK8IP3	16	1815160	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	972706	1815160	88539593	78	17453											
PKD1	5310	hgsc.bcm.edu	37	16	2155892	2155892	+	Silent	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	2155892	A	G	2155892	2	3	270	1	0	0	0	0	0	0	0	1	11970	40	2	3		3	PKD1	16	2155892	Silent	SNP	A	TCGA-B9-5156-01A-01D-1589-08	340732	2155892	88198861	79	17454											
MYLK3	91807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	46766187	46766187	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	46766187	C	T	46766187	2	4	270	1	0	0	0	0	0	0	0	1	10065	622	22	2		2	MYLK3	16	46766187	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	44610295	46766187	43588566	80	17455											
AMFR	267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56435720	56435720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	56435720	T	C	56435720	3	2	270	1	0	0	0	0	1	0	0	0	571	1725	60	3	949	3	AMFR	16	56435720	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	9669533	56435720	33919033	81	17456											
NDEL1	81565	broad.mit.edu	37	17	8370302	8370302	+	Silent	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	8370302	T	C	8370302	2	2	270	1	0	0	0	0	0	0	0	1	10251	1654	58	3		3	NDEL1	17	8370302	Silent	SNP	T	TCGA-B9-5156-01A-01D-1589-08		8370302	72824908	82	17457											
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	28405254	28405255	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	28405255	-	A	28405254	7	5	270	1	0	1	1	0	0	0	0	0	4940	594	21	0	2984	0	EFCAB5	17	28405254	Frame_Shift_Ins	INS	-	TCGA-B9-5156-01A-01D-1589-08	20034952	28405254	52789956	83	17458											
PEX12	5193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33903043	33903043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	33903043	G	A	33903043	3	1	270	1	0	0	0	0	1	0	0	0	11747	1203	42	2	245	2	PEX12	17	33903043	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	5497789	33903043	47292167	84	17459											
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77077140	77077141	+	Missense_Mutation	DNP	TC	TC	CG	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	CG	77077141	TC	CG	77077140	3	2	270	1	0	0	0	0	1	0	0	0	5120	1551	54	3	879	3	ENGASE	17	77077140	Missense_Mutation	DNP	TC	TCGA-B9-5156-01A-01D-1589-08	43174097	77077140	4118070	85	17460											
SMAD4	4089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	48581177	48581177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	48581177	G	A	48581177	3	1	270	1	0	0	0	0	1	0	0	0	14773	1291	45	2	495	2	SMAD4	18	48581177	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		48581177	29496071	86	17461	229	2									
SMAD4	4089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	48581187	48581187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	48581187	A	G	48581187	3	3	270	1	0	0	0	0	1	0	0	0	14773	217	8	3	505	3	SMAD4	18	48581187	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	10	48581187	29496061	87	17462	229	2									
TCF4	6925	hgsc.bcm.edu	37	18	52921883	52921883	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	52921883	C	G	52921883	3	3	270	1	0	0	0	0	1	0	0	0	15707	478	17	4	840	4	TCF4	18	52921883	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	4340696	52921883	25155365	88	17463											
RNF152	220441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	59483577	59483577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	59483577	C	A	59483577	3	1	270	1	0	0	0	0	1	0	0	0	13466	796	28	4	495	4	RNF152	18	59483577	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	6561694	59483577	18593671	89	17464											
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3527659	3527659	+	Silent	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	3527659	C	A	3527659	2	1	270	1	0	0	0	0	0	0	0	1	6145	581	21	4		4	FZR1	19	3527659	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08		3527659	55601324	90	17465											
MAP2K2	5605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4117623	4117623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	4117623	T	G	4117623	3	3	270	1	0	0	0	0	1	0	0	0	9244	1841	64	5	1145	5	MAP2K2	19	4117623	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	589964	4117623	55011360	91	17466											
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5082512	5082513	+	Missense_Mutation	DNP	TC	TC	CA	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	CA	5082513	TC	CA	5082512	3	2	270	1	0	0	0	0	1	0	0	0	8136	1538	54	3	941	3	KDM4B	19	5082512	Missense_Mutation	DNP	TC	TCGA-B9-5156-01A-01D-1589-08	964889	5082512	54046471	92	17467											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11144150	11144150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	C	11144150	G	C	11144150	3	2	270	1	0	0	0	0	1	0	0	0	14783	1087	38	4	3829	4	SMARCA4	19	11144150	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	6061638	11144150	47984833	93	17468											
KANK2	25959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11304538	11304538	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	11304538	A	T	11304538	3	4	270	1	0	0	0	0	1	0	0	0	7984	188	7	5	2401	5	KANK2	19	11304538	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	160388	11304538	47824445	94	17469											
ZNF791	163049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12739559	12739559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	12739559	C	A	12739559	3	1	270	1	0	0	0	0	1	0	0	0	18175	826	29	4	1230	4	ZNF791	19	12739559	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	1435021	12739559	46389424	95	17470											
ZNF260	339324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37005333	37005333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	37005333	G	A	37005333	3	1	270	1	0	0	0	0	1	0	0	0	17814	1290	45	2	434	2	ZNF260	19	37005333	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	24265774	37005333	22123650	96	17471											
GSK3A	2931	hgsc.bcm.edu	37	19	42746451	42746451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	42746451	A	G	42746451	3	3	270	1	0	0	0	0	1	0	0	0	6830	217	8	3	1328	3	GSK3A	19	42746451	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	5741118	42746451	16382532	97	17472											
NOSIP	51070	hgsc.bcm.edu;broad.mit.edu	37	19	50063190	50063190	+	Splice_Site	SNP	C	C	G	rs150449733	alternate_allele	TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	50063190	C	G	50063190	5	3	270	1	0	0	0	0	0	0	1	0	10552	550	19	4	756	4	NOSIP	19	50063190	Splice_Site	SNP	C	TCGA-B9-5156-01A-01D-1589-08	7316739	50063190	9065793	98	17473											
TTYH1	57348	broad.mit.edu	37	19	54932519	54932519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	54932519	C	T	54932519	3	4	270	1	0	0	0	0	1	0	0	0	16751	768	27	1	384	1	TTYH1	19	54932519	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	4869329	54932519	4196464	99	17474											
FITM2	128486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42935425	42935425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	42935425	G	T	42935425	3	4	270	1	0	0	0	0	1	0	0	0	5906	971	34	4	163	4	FITM2	20	42935425	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		42935425	20090095	100	17475											
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36716872	36716872	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	36716872	A	T	36716872	3	4	270	1	0	0	0	0	1	0	0	0	10049	304	11	5	5179	5	MYH9	22	36716872	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08		36716872	14587694	101	17476											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41489069	41489069	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	G	41489069	C	G	41489069	3	3	270	1	0	0	0	0	1	0	0	0	5150	855	30	4	63	4	EP300	22	41489069	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	4772197	41489069	9815497	102	17477											
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	40999924	40999924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	A	40999924	C	A	40999924	3	1	270	1	0	0	0	0	1	0	0	0	17102	913	32	4	692	4	USP9X	23	40999924	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08		40999924	114270636	103	17478											
SHROOM4	57477	hgsc.bcm.edu	37	X	50350698	50350698	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	T	50350698	C	T	50350698	2	4	270	1	0	0	0	0	0	0	0	1	14309	680	24	2		2	SHROOM4	23	50350698	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	9350774	50350698	104919862	104	17479											
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	2160390	C	G	2160390	3	3	271	1	0	0	0	0	1	0	0	0	14370	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08		2160390	247090231	1	17480											
FUCA1	2517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24192102	24192102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	24192102	T	C	24192102	3	2	271	1	0	0	0	0	1	0	0	0	6101	1667	58	3	1025	3	FUCA1	1	24192102	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	22031712	24192102	225058519	2	17481											
CATSPER4	378807	ucsc.edu	37	1	26528995	26528995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	26528995	T	C	26528995	3	2	271	1	0	0	0	0	1	0	0	0	2692	1551	54	3	1419	3	CATSPER4	1	26528995	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	2336893	26528995	222721626	3	17482											
PABPC4	8761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40029530	40029530	+	Silent	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	40029530	C	T	40029530	2	4	271	1	0	0	0	0	0	0	0	1	11373	813	29	2		2	PABPC4	1	40029530	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	13500535	40029530	209221091	4	17483											
BEST4	266675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	45250593	45250593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	45250593	A	G	45250593	3	3	271	1	0	0	0	0	1	0	0	0	1407	449	16	3	456	3	BEST4	1	45250593	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08	5221063	45250593	204000028	5	17484											
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109302625	109302625	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	109302625	T	G	109302625	3	3	271	1	0	0	0	0	1	0	0	0	15366	1841	64	5	378	5	STXBP3	1	109302625	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	64052032	109302625	139947996	6	17485											
CHD1L	9557	hgsc.bcm.edu	37	1	146727559	146727559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	146727559	C	G	146727559	3	3	271	1	0	0	0	0	1	0	0	0	3326	826	29	4	453	4	CHD1L	1	146727559	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	37424934	146727559	102523062	7	17486											
C1orf54	79630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150248209	150248212	+	Splice_Site	DEL	GTGA	GTGA	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	GTGA	GTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	-	150248212	GTGA	-	150248209	8	5	271	1	0	1	0	1	0	0	1	0	2048	1275	44	0	200	0	C1orf54	1	150248209	Splice_Site	DEL	GTGA	TCGA-B9-7268-01A-11D-2136-08	3520650	150248209	99002412	8	17487											
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151259373	151259373	+	Silent	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	151259373	C	G	151259373	2	3	271	1	0	0	0	0	0	0	0	1	18104	610	22	4		4	ZNF687	1	151259373	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	1011164	151259373	97991248	9	17488											
SPRR1A	6698	hgsc.bcm.edu;broad.mit.edu	37	1	152957850	152957850	+	Silent	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	152957850	C	T	152957850	2	4	271	1	0	0	0	0	0	0	0	1	15107	668	24	2		2	SPRR1A	1	152957850	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	1698477	152957850	96292771	10	17489											
SPRR1B	6699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153004965	153004965	+	Silent	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	153004965	C	T	153004965	2	4	271	1	0	0	0	0	0	0	0	1	15108	668	24	2		2	SPRR1B	1	153004965	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	47115	153004965	96245656	11	17490											
DCAF8	50717	hgsc.bcm.edu	37	1	160209974	160209974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	160209974	T	G	160209974	3	3	271	1	0	0	0	0	1	0	0	0	4278	1667	58	5	1601	5	DCAF8	1	160209974	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	7205009	160209974	89040647	12	17491											
IFT172	26160	hgsc.bcm.edu	37	2	27704121	27704121	+	Silent	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	27704121	A	G	27704121	2	3	271	1	0	0	0	0	0	0	0	1	7564	40	2	3		3	IFT172	2	27704121	Silent	SNP	A	TCGA-B9-7268-01A-11D-2136-08		27704121	215495252	13	17492											
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	33412000	33412000	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	-	33412000	G	-	33412000	7	5	271	1	0	1	0	1	0	0	0	0	9080	1001	35	0	1356	0	LTBP1	2	33412000	Frame_Shift_Del	DEL	G	TCGA-B9-7268-01A-11D-2136-08	5707879	33412000	209787373	14	17493	230	2									
LTBP1	4052	hgsc.bcm.edu;bcgsc.ca	37	2	33412006	33412006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	33412006	C	A	33412006	3	1	271	1	0	0	0	0	1	0	0	0	9080	565	20	4	1362	4	LTBP1	2	33412006	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	6	33412006	209787367	15	17494	230	2									
GGCX	2677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85777685	85777685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	85777685	G	T	85777685	3	4	271	1	0	0	0	0	1	0	0	0	6363	1058	37	4	207	4	GGCX	2	85777685	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	52365679	85777685	157421688	16	17495											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152507333	152507333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	152507333	C	T	152507333	3	4	271	1	0	0	0	0	1	0	0	0	10309	826	29	2	19224	2	NEB	2	152507333	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	66729648	152507333	90692040	17	17496											
RAPGEF4	11069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	173832042	173832042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	173832042	G	A	173832042	3	1	271	1	0	0	0	0	1	0	0	0	13059	1290	45	2	928	2	RAPGEF4	2	173832042	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	21324709	173832042	69367331	18	17497											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218712984	218712984	+	Silent	SNP	G	G	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	218712984	G	C	218712984	2	2	271	1	0	0	0	0	0	0	0	1	16355	1219	43	4		4	TNS1	2	218712984	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	44880942	218712984	24486389	19	17498											
MYEOV2	150678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241073371	241073371	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	241073371	C	G	241073371	3	3	271	1	0	0	0	0	1	0	0	0	10033	536	19	4	570	4	MYEOV2	2	241073371	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	22360387	241073371	2126002	20	17499											
TTLL3	26140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9877081	9877081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	9877081	G	A	9877081	3	1	271	1	0	0	0	0	1	0	0	0	16740	1029	36	2	2273	2	TTLL3	3	9877081	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08		9877081	188145349	21	17500											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52526307	52526307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	52526307	C	A	52526307	3	1	271	1	0	0	0	0	1	0	0	0	10439	681	24	4	4406	4	NISCH	3	52526307	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	42649226	52526307	145496123	22	17501											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113376680	113376680	+	Silent	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	113376680	G	T	113376680	2	4	271	1	0	0	0	0	0	0	0	1	8275	1306	46	4		4	KIAA2018	3	113376680	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	60850373	113376680	84645750	23	17502											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123254840	123254840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	123254840	A	G	123254840	3	3	271	1	0	0	0	0	1	0	0	0	8215	72	3	3	11784	3	KIAA1109	4	123254840	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		123254840	67899436	24	17503											
NUDT6	11162	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123843660	123843660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	123843660	G	A	123843660	3	1	271	1	0	0	0	0	1	0	0	0	10750	1059	37	1	902	1	NUDT6	4	123843660	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	588820	123843660	67310616	25	17504											
CBR4	84869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169931208	169931208	+	Silent	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	169931208	G	T	169931208	2	4	271	1	0	0	0	0	0	0	0	1	2712	1219	43	4		4	CBR4	4	169931208	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	46087548	169931208	21223068	26	17505											
FAT1	2195	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	187540602	187540602	+	Missense_Mutation	SNP	C	C	T	rs201352448		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	187540602	C	T	187540602	3	4	271	1	0	0	0	0	1	0	0	0	5696	536	19	1	6700	1	FAT1	4	187540602	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	17609394	187540602	3613674	27	17506											
CDKL3	51265	hgsc.bcm.edu	37	5	133695635	133695635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	133695635	A	C	133695635	3	2	271	1	0	0	0	0	1	0	0	0	3157	449	16	5	1513	5	CDKL3	5	133695635	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		133695635	47219625	28	17507											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38704982	38704982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	38704982	A	T	38704982	3	4	271	1	0	0	0	0	1	0	0	0	4609	246	9	5	257	5	DNAH8	6	38704982	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		38704982	132410085	29	17508											
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136582550	136582550	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	-	136582550	T	-	136582550	7	5	271	1	0	1	0	1	0	0	0	0	1383	1722	60	0	160	0	BCLAF1	6	136582550	Frame_Shift_Del	DEL	T	TCGA-B9-7268-01A-11D-2136-08	97877568	136582550	34532517	30	17509											
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	24745817	24745817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	24745817	A	T	24745817	3	4	271	1	0	0	0	0	1	0	0	0	4456	275	10	5	333	5	DFNA5	7	24745817	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		24745817	134392846	31	17510											
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu	37	7	150068863	150068864	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	150068864	-	A	150068863	7	5	271	1	0	1	1	0	0	0	0	0	13240	1406	49	0	710	0	REPIN1	7	150068863	Frame_Shift_Ins	INS	-	TCGA-B9-7268-01A-11D-2136-08	125323046	150068863	9069800	32	17511											
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	8235103	8235103	+	Silent	SNP	A	A	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	8235103	A	T	8235103	2	4	271	1	0	0	0	0	0	0	0	1	14223	175	7	5		5	SGK223	8	8235103	Silent	SNP	A	TCGA-B9-7268-01A-11D-2136-08		8235103	138128919	33	17512											
GPR124	25960	hgsc.bcm.edu	37	8	37699293	37699293	+	Missense_Mutation	SNP	T	T	C	rs111828443		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	37699293	T	C	37699293	3	2	271	1	0	0	0	0	1	0	0	0	6645	1696	59	3	3490	3	GPR124	8	37699293	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	29464190	37699293	108664729	34	17513											
NPBWR1	2831	ucsc.edu	37	8	53852861	53852861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	53852861	G	A	53852861	3	1	271	1	0	0	0	0	1	0	0	0	10575	1087	38	1	396	1	NPBWR1	8	53852861	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	16153568	53852861	92511161	35	17514											
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	68070755	68070755	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	-	68070755	G	-	68070755	7	5	271	1	0	1	0	1	0	0	0	0	3964	1116	39	0	2483	0	CSPP1	8	68070755	Frame_Shift_Del	DEL	G	TCGA-B9-7268-01A-11D-2136-08	14217894	68070755	78293267	36	17515											
NIPAL2	79815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99215364	99215364	+	Silent	SNP	A	A	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	99215364	A	T	99215364	2	4	271	1	0	0	0	0	0	0	0	1	10432	10	1	5		5	NIPAL2	8	99215364	Silent	SNP	A	TCGA-B9-7268-01A-11D-2136-08	31144609	99215364	47148658	37	17516											
JRK	8629	hgsc.bcm.edu	37	8	143745894	143745894	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	143745894	C	G	143745894	3	3	271	1	0	0	0	0	1	0	0	0	7971	521	18	4	222	4	JRK	8	143745894	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	44530530	143745894	2618128	38	17517											
C9orf91	203197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117400851	117400851	+	Silent	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	117400851	T	C	117400851	2	2	271	1	0	0	0	0	0	0	0	1	2507	1722	60	3		3	C9orf91	9	117400851	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08		117400851	23812580	39	17518											
LIPA	3988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	90974746	90974746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	-	90974746	G	-	90974746	7	5	271	1	0	1	0	1	0	0	0	0	8826	971	34	0	164	0	LIPA	10	90974746	Frame_Shift_Del	DEL	G	TCGA-B9-7268-01A-11D-2136-08		90974746	44560001	40	17519											
CUTC	51076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101507060	101507060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	101507060	A	C	101507060	3	2	271	1	0	0	0	0	1	0	0	0	4065	359	13	5	508	5	CUTC	10	101507060	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08	10532314	101507060	34027687	41	17520											
ENDOD1	23052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94862157	94862157	+	Missense_Mutation	SNP	C	C	G	rs61734147	alternate_allele	TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	94862157	C	G	94862157	3	3	271	1	0	0	0	0	1	0	0	0	5116	913	32	4	923	4	ENDOD1	11	94862157	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08		94862157	40144359	42	17521											
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118243839	118243839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	118243839	G	A	118243839	3	1	271	1	0	0	0	0	1	0	0	0	16894	1291	45	2	803	2	UBE4A	11	118243839	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	23381682	118243839	16762677	43	17522											
MCAM	4162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119183001	119183001	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	119183001	A	C	119183001	3	2	271	1	0	0	0	0	1	0	0	0	9375	156	6	5	977	5	MCAM	11	119183001	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08	939162	119183001	15823515	44	17523											
APOLD1	81575	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	12940182	12940182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	12940182	C	T	12940182	3	4	271	1	0	0	0	0	1	0	0	0	811	643	23	1	449	1	APOLD1	12	12940182	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08		12940182	120911713	45	17524											
ANP32D	23519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48866497	48866497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	48866497	C	A	48866497	3	1	271	1	0	0	0	0	1	0	0	0	708	855	30	4	52	4	ANP32D	12	48866497	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	35926315	48866497	84985398	46	17525											
KRT77	374454	hgsc.bcm.edu	37	12	53086342	53086342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	53086342	G	C	53086342	3	2	271	1	0	0	0	0	1	0	0	0	8497	1252	44	4	458	4	KRT77	12	53086342	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	4219845	53086342	80765553	47	17526											
KRT4	3851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53205646	53205646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	53205646	C	G	53205646	3	3	271	1	0	0	0	0	1	0	0	0	8484	565	20	4	1016	4	KRT4	12	53205646	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	119304	53205646	80646249	48	17527											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85449852	85449852	+	Silent	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	85449852	G	T	85449852	2	4	271	1	0	0	0	0	0	0	0	1	9036	1335	47	4		4	LRRIQ1	12	85449852	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	32244206	85449852	48402043	49	17528											
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102125409	102125409	+	Silent	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	102125409	T	C	102125409	2	2	271	1	0	0	0	0	0	0	0	1	15446	1490	52	3		3	SYCP3	12	102125409	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08	16675557	102125409	31726486	50	17529											
GATC	283459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120884511	120884511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	120884511	C	T	120884511	3	4	271	1	0	0	0	0	1	0	0	0	6269	797	28	2	139	2	GATC	12	120884511	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	18759102	120884511	12967384	51	17530											
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	131590407	131590407	+	Silent	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	131590407	C	A	131590407	2	1	271	1	0	0	0	0	0	0	0	1	6650	697	25	4		4	GPR133	12	131590407	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	10705896	131590407	2261488	52	17531											
MNAT1	4331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61434959	61434959	+	Silent	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	61434959	T	C	61434959	2	2	271	1	0	0	0	0	0	0	0	1	9681	1461	51	3		3	MNAT1	14	61434959	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08		61434959	45914581	53	17532											
MARK3	4140	hgsc.bcm.edu	37	14	103894758	103894758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	103894758	A	G	103894758	3	3	271	1	0	0	0	0	1	0	0	0	9321	101	4	3	288	3	MARK3	14	103894758	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08	42459799	103894758	3454782	54	17533											
PKD1	5310	ucsc.edu	37	16	2153595	2153595	+	Silent	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	2153595	G	A	2153595	2	1	271	1	0	0	0	0	0	0	0	1	11970	1136	40	1		1	PKD1	16	2153595	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08		2153595	88201158	55	17534											
TERF2	7014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69402345	69402345	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	69402345	C	G	69402345	3	3	271	1	0	0	0	0	1	0	0	0	15774	565	20	4	767	4	TERF2	16	69402345	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	67248750	69402345	20952408	56	17535											
GINS2	51659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	85715212	85715212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	85715212	T	C	85715212	3	2	271	1	0	0	0	0	1	0	0	0	6395	1783	62	3	288	3	GINS2	16	85715212	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	16312867	85715212	4639541	57	17536											
YBX2	51087	hgsc.bcm.edu	37	17	7197633	7197633	+	Missense_Mutation	SNP	A	A	G	rs8069533		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	7197633	A	G	7197633	3	3	271	1	0	0	0	0	1	0	0	0	17482	304	11	3	939	3	YBX2	17	7197633	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		7197633	73997577	58	17537											
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	14005508	14005508	+	Silent	SNP	T	T	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	14005508	T	A	14005508	2	1	271	1	0	0	0	0	0	0	0	1	3764	1741	61	5		5	COX10	17	14005508	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08	6807875	14005508	67189702	59	17538											
AATK	9625	hgsc.bcm.edu	37	17	79096100	79096100	+	Missense_Mutation	SNP	C	C	G	rs62073020		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	79096100	C	G	79096100	3	3	271	1	0	0	0	0	1	0	0	0	26	826	29	4	2504	4	AATK	17	79096100	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	65090592	79096100	2099110	60	17539											
TXNL1	9352	bcgsc.ca	37	18	54293655	54293655	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	54293655	G	C	54293655	3	2	271	1	0	0	0	0	1	0	0	0	16816	1281	45	4	765	4	TXNL1	18	54293655	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08		54293655	23783593	61	17540											
SMARCA4	6597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11144469	11144469	+	Silent	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	11144469	C	A	11144469	2	1	271	1	0	0	0	0	0	0	0	1	14783	697	25	4		4	SMARCA4	19	11144469	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08		11144469	47984514	62	17541											
FAM187B	148109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35718874	35718874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	35718874	C	T	35718874	3	4	271	1	0	0	0	0	1	0	0	0	5517	855	30	2	407	2	FAM187B	19	35718874	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	24574405	35718874	23410109	63	17542											
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40540794	40540794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	40540794	G	C	40540794	3	2	271	1	0	0	0	0	1	0	0	0	18165	1299	45	4	533	4	ZNF780B	19	40540794	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	4821920	40540794	18588189	64	17543											
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42492245	42492245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	42492245	G	A	42492245	3	1	271	1	0	0	0	0	1	0	0	0	1130	1000	35	2	2921	2	ATP1A3	19	42492245	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	1951451	42492245	16636738	65	17544											
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52660096	52660096	+	Silent	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	A	52660096	G	A	52660096	2	1	271	1	0	0	0	0	0	0	0	1	18199	1306	46	2		2	ZNF836	19	52660096	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	10167851	52660096	6468887	66	17545											
ZNF264	9422	bcgsc.ca	37	19	57724137	57724137	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	57724137	C	G	57724137	3	3	271	1	0	0	0	0	1	0	0	0	17816	827	29	4	1686	4	ZNF264	19	57724137	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	5064041	57724137	1404846	67	17546											
SCARF2	91179	broad.mit.edu	37	22	20791897	20791897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	T	20791897	G	T	20791897	3	4	271	1	0	0	0	0	1	0	0	0	13897	1058	37	4	2511	4	SCARF2	22	20791897	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08		20791897	30512669	68	17547											
PHF16	9767	hgsc.bcm.edu	37	X	46918438	46918438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	46918438	A	G	46918438	3	3	271	1	0	0	0	0	1	0	0	0	11834	72	3	3	2469	3	PHF16	23	46918438	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		46918438	108352122	69	17548											
HUWE1	10075	ucsc.edu	37	X	53607789	53607789	+	Splice_Site	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	G	53607789	A	G	53607789	5	3	271	1	0	0	0	0	0	0	1	0	7468	405	14	3	7574	3	HUWE1	23	53607789	Splice_Site	SNP	A	TCGA-B9-7268-01A-11D-2136-08	6689351	53607789	101662771	70	17549											
ZMYM3	9203	hgsc.bcm.edu	37	X	70468027	70468027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	70468027	T	C	70468027	3	2	271	1	0	0	0	0	1	0	0	0	17713	1609	56	3	2212	3	ZMYM3	23	70468027	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	16860238	70468027	84802533	71	17550											
PHKA1	5255	hgsc.bcm.edu;ucsc.edu	37	X	71822085	71822085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	71822085	T	C	71822085	3	2	271	1	0	0	0	0	1	0	0	0	11850	1406	49	3	739	3	PHKA1	23	71822085	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	1354058	71822085	83448475	72	17551											
CCDC160	347475	hgsc.bcm.edu	37	X	133379028	133379028	+	Silent	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	C	133379028	T	C	133379028	2	2	271	1	0	0	0	0	0	0	0	1	2794	1413	49	3		3	CCDC160	23	133379028	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08	61556943	133379028	21891532	73	17552											
FAM132A	388581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1179848	1179848	+	Silent	SNP	G	G	C	rs200735866	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	1179848	G	C	1179848	2	2	272	1	0	0	0	0	0	0	0	1	5446	1103	39	4		4	FAM132A	1	1179848	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		1179848	248070773	1	17553											
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6142274	6142274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	6142274	C	A	6142274	3	1	272	1	0	0	0	0	1	0	0	0	8017	507	18	4	239	4	KCNAB2	1	6142274	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	4962426	6142274	243108347	2	17554											
CASZ1	54897	broad.mit.edu	37	1	10699156	10699158	+	In_Frame_Del	DEL	TCG	TCG	-	rs201089181	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	10699158	TCG	-	10699156	7	5	272	1	0	1	0	1	0	0	0	0	2687	1551	54	0	160	0	CASZ1	1	10699156	In_Frame_Del	DEL	TCG	TCGA-B9-A44B-01A-11D-A25F-10	4556882	10699156	238551465	3	17555											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16258337	16258337	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	16258337	T	G	16258337	3	3	272	1	0	0	0	0	1	0	0	0	15050	1490	52	5	5644	5	SPEN	1	16258337	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	5559181	16258337	232992284	4	17556											
RCAN3	11123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	24840954	24840954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	24840954	A	-	24840954	7	5	272	1	0	1	0	1	0	0	0	0	13183	246	9	0	94	0	RCAN3	1	24840954	Frame_Shift_Del	DEL	A	TCGA-B9-A44B-01A-11D-A25F-10	8582617	24840954	224409667	5	17557											
DNALI1	7802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	38027791	38027793	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	38027793	AGA	-	38027791	7	5	272	1	0	1	0	1	0	0	0	0	4661	304	11	0	770	0	DNALI1	1	38027791	In_Frame_Del	DEL	AGA	TCGA-B9-A44B-01A-11D-A25F-10	13186837	38027791	211222830	6	17558											
SLC44A3	126969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	95360468	95360468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	95360468	T	C	95360468	3	2	272	1	0	0	0	0	1	0	0	0	14650	1493	52	3	2010	3	SLC44A3	1	95360468	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	57332677	95360468	153890153	7	17559											
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110029635	110029635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	110029635	G	C	110029635	3	2	272	1	0	0	0	0	1	0	0	0	1217	942	33	4	319	4	ATXN7L2	1	110029635	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	14669167	110029635	139220986	8	17560											
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	112999419	112999419	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	112999419	G	-	112999419	7	5	272	1	0	1	0	1	0	0	0	0	4048	962	34	0	1319	0	CTTNBP2NL	1	112999419	Frame_Shift_Del	DEL	G	TCGA-B9-A44B-01A-11D-A25F-10	2969784	112999419	136251202	9	17561											
CELF3	11189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151688462	151688462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	151688462	C	T	151688462	3	4	272	1	0	0	0	0	1	0	0	0	3219	623	22	2	1418	2	CELF3	1	151688462	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	38689043	151688462	97562159	10	17562											
MRPL24	79590	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156707893	156707893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	156707893	G	A	156707893	3	1	272	1	0	0	0	0	1	0	0	0	9797	1115	39	1	349	1	MRPL24	1	156707893	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	5019431	156707893	92542728	11	17563											
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182026912	182026918	+	Frame_Shift_Del	DEL	TTCCTCT	TTCCTCT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TTCCTCT	TTCCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	182026918	TTCCTCT	-	182026912	7	5	272	1	0	1	0	1	0	0	0	0	18075	1606	56	0	1476	0	ZNF648	1	182026912	Frame_Shift_Del	DEL	TTCCTCT	TCGA-B9-A44B-01A-11D-A25F-10	25319019	182026912	67223709	12	17564											
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200376815	200376815	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	200376815	T	C	200376815	2	2	272	1	0	0	0	0	0	0	0	1	17830	1722	60	3		3	ZNF281	1	200376815	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	18349903	200376815	48873806	13	17565											
HS1BP3	64342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20818857	20818857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	20818857	C	G	20818857	3	3	272	1	0	0	0	0	1	0	0	0	7368	739	26	4	113	4	HS1BP3	2	20818857	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		20818857	222380516	14	17566											
CCDC121	79635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27850548	27850548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	27850548	A	G	27850548	3	3	272	1	0	0	0	0	1	0	0	0	2759	188	7	3	721	3	CCDC121	2	27850548	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	7031691	27850548	215348825	15	17567											
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29420473	29420473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	29420473	C	A	29420473	3	1	272	1	0	0	0	0	1	0	0	0	525	680	24	4	866	4	ALK	2	29420473	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	1569925	29420473	213778900	16	17568											
LOC285033	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96906416	96906416	+	RNA	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	96906416	C	A	96906416	1	1	272	0	1	0	0	0	0	0	0	0	8880	855	30	4		4	LOC285033	2	96906416	RNA	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	67485943	96906416	146292957	17	17569											
RGPD3	653489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	107073432	107073432	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	107073432	G	A	107073432	2	1	272	1	0	0	0	0	0	0	0	1	13300	1020	36	2		2	RGPD3	2	107073432	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	10167016	107073432	136125941	18	17570											
RABL2A	11159	broad.mit.edu	37	2	114391751	114391751	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	114391751	G	A	114391751	2	1	272	1	0	0	0	0	0	0	0	1	12983	1132	40	1		1	RABL2A	2	114391751	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	7318319	114391751	128807622	19	17571											
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166153545	166153545	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	166153545	A	T	166153545	4	4	272	1	0	0	0	0	0	1	0	0	13929	363	13	5	292	5	SCN2A	2	166153545	Nonsense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	51761794	166153545	77045828	20	17572											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170055306	170055306	+	Silent	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	170055306	A	G	170055306	2	3	272	1	0	0	0	0	0	0	0	1	8963	407	15	3		3	LRP2	2	170055306	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	3901761	170055306	73144067	21	17573											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197784853	197784853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	197784853	G	T	197784853	3	4	272	1	0	0	0	0	1	0	0	0	11784	1020	36	4	2703	4	PGAP1	2	197784853	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	27729547	197784853	45414520	22	17574											
COL6A3	1293	broad.mit.edu;bcgsc.ca	37	2	238275565	238275565	+	Silent	SNP	C	C	T	rs140699766		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	238275565	C	T	238275565	2	4	272	1	0	0	0	0	0	0	0	1	3703	639	23	1		1	COL6A3	2	238275565	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	40490712	238275565	4923808	23	17575											
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242407764	242407764	+	Silent	SNP	C	C	G	rs138469271	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	242407764	C	G	242407764	2	3	272	1	0	0	0	0	0	0	0	1	5684	639	23	4		4	FARP2	2	242407764	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	4132199	242407764	791609	24	17576											
MKRN2	23609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12611673	12611673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	12611673	G	A	12611673	3	1	272	1	0	0	0	0	1	0	0	0	9614	1261	44	2	269	2	MKRN2	3	12611673	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		12611673	185410757	25	17577											
RPSA	3921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	39453553	39453556	+	Splice_Site	DEL	GTAT	GTAT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	GTAT	GTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	39453556	GTAT	-	39453553	8	5	272	1	0	1	0	1	0	0	1	0	13676	1275	44	0	812	0	RPSA	3	39453553	Splice_Site	DEL	GTAT	TCGA-B9-A44B-01A-11D-A25F-10	26841880	39453553	158568877	26	17578											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47163966	47163967	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	47163967	-	C	47163966	7	5	272	1	0	1	1	0	0	0	0	0	14144	1422	50	0	5610	0	SETD2	3	47163966	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10	7710413	47163966	150858464	27	17579											
POC1A	25886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52181040	52181040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	52181040	C	A	52181040	3	1	272	1	0	0	0	0	1	0	0	0	12182	797	28	4	724	4	POC1A	3	52181040	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	5017074	52181040	145841390	28	17580											
STAB1	23166	hgsc.bcm.edu	37	3	52555670	52555671	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	52555671	-	T	52555670	7	5	272	1	0	1	1	0	0	0	0	0	15249	805	28	0	6343	0	STAB1	3	52555670	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10	374630	52555670	145466760	29	17581											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52637647	52637647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	52637647	G	T	52637647	3	4	272	1	0	0	0	0	1	0	0	0	11498	1319	46	4	2287	4	PBRM1	3	52637647	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	81977	52637647	145384783	30	17582											
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57743531	57743531	+	Silent	SNP	A	A	G	rs147270008		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	57743531	A	G	57743531	2	3	272	1	0	0	0	0	0	0	0	1	14762	436	16	3		3	SLMAP	3	57743531	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	5105884	57743531	140278899	31	17583											
THPO	7066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184090635	184090635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	184090635	A	C	184090635	3	2	272	1	0	0	0	0	1	0	0	0	15884	333	12	5	337	5	THPO	3	184090635	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	126347104	184090635	13931795	32	17584											
EIF4A2	1974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186503770	186503770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	186503770	G	T	186503770	3	4	272	1	0	0	0	0	1	0	0	0	5027	991	35	4	465	4	EIF4A2	3	186503770	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	2413135	186503770	11518660	33	17585											
MUC4	4585	bcgsc.ca	37	3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T	rs11915935		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	195505787	C	T	195505787	3	4	272	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195505787	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	9002017	195505787	2516643	34	17586			1	33		4	4	6088	N	G_C_A	5.257272e-06
MUC4	4585	bcgsc.ca	37	3	195507744	195507744	+	Silent	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	195507744	A	C	195507744	2	2	272	1	0	0	0	0	0	0	0	1	9985	233	9	5		5	MUC4	3	195507744	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	1957	195507744	2514686	35	17587			1	33		4	4	6088	N	G_C_A	5.257272e-06
MUC4	4585	bcgsc.ca	37	3	195507851	195507851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	195507851	C	T	195507851	3	4	272	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195507851	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	107	195507851	2514579	36	17588			1	33		4	4	6088	N	G_C_A	5.257272e-06
MUC4	4585	bcgsc.ca	37	3	195511874	195511874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	195511874	G	C	195511874	3	2	272	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195511874	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	4023	195511874	2510556	37	17589			1	33		4	4	6088	N	G_C_A	5.257272e-06
SLC30A9	10463	bcgsc.ca	37	4	42051440	42051440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	42051440	G	T	42051440	3	4	272	1	0	0	0	0	1	0	0	0	14575	1116	39	4	818	4	SLC30A9	4	42051440	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		42051440	149102836	38	17590											
TMPRSS11A	339967	bcgsc.ca	37	4	68777112	68777112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	68777112	T	A	68777112	3	1	272	1	0	0	0	0	1	0	0	0	16251	1638	57	5	55	5	TMPRSS11A	4	68777112	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	26725672	68777112	122377164	39	17591											
ZNF622	90441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16465479	16465479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	16465479	A	G	16465479	3	3	272	1	0	0	0	0	1	0	0	0	18058	159	6	3	1161	3	ZNF622	5	16465479	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10		16465479	164449781	40	17592											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16685914	16685914	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	16685914	A	C	16685914	3	2	272	1	0	0	0	0	1	0	0	0	10069	275	10	5	2305	5	MYO10	5	16685914	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	220435	16685914	164229346	41	17593											
CDH9	1007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	26915851	26915851	+	Missense_Mutation	SNP	C	C	T	rs150604531		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	26915851	C	T	26915851	3	4	272	1	0	0	0	0	1	0	0	0	3119	652	23	1	1999	1	CDH9	5	26915851	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	10229937	26915851	153999409	42	17594											
GDNF	2668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37834925	37834925	+	Splice_Site	SNP	C	C	A	rs13169425		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	37834925	C	A	37834925	5	1	272	1	0	0	0	0	0	0	1	0	6329	695	24	4		4	GDNF	5	37834925	Splice_Site	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	10919074	37834925	143080335	43	17595											
PRRC1	133619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	126860514	126860514	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	126860514	G	C	126860514	3	2	272	1	0	0	0	0	1	0	0	0	12614	1174	41	4	401	4	PRRC1	5	126860514	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	89025589	126860514	54054746	44	17596											
MATR3	9782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138643239	138643239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	138643239	G	A	138643239	3	1	272	1	0	0	0	0	1	0	0	0	9344	1290	45	2	137	2	MATR3	5	138643239	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	11782725	138643239	42272021	45	17597											
PCDHB13	56123	broad.mit.edu	37	5	140595249	140595249	+	Silent	SNP	T	T	C	rs144959109	byfrequency;alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	140595249	T	C	140595249	2	2	272	1	0	0	0	0	0	0	0	1	11545	1538	54	3		3	PCDHB13	5	140595249	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	1952010	140595249	40320011	46	17598											
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	148730494	148730494	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	148730494	C	T	148730494	2	4	272	1	0	0	0	0	0	0	0	1	6814	912	32	2		2	GRPEL2	5	148730494	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	8135245	148730494	32184766	47	17599											
DSP	1832	hgsc.bcm.edu;bcgsc.ca	37	6	7562996	7562996	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	7562996	A	-	7562996	7	5	272	1	0	1	0	1	0	0	0	0	4783	131	5	0	727	0	DSP	6	7562996	Frame_Shift_Del	DEL	A	TCGA-B9-A44B-01A-11D-A25F-10		7562996	163552071	48	17600											
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30681013	30681013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	30681013	C	A	30681013	3	1	272	1	0	0	0	0	1	0	0	0	9410	797	28	4	5607	4	MDC1	6	30681013	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	23118017	30681013	140434054	49	17601											
TCP11	6954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35086064	35086064	+	Silent	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	35086064	T	G	35086064	2	3	272	1	0	0	0	0	0	0	0	1	15725	1799	63	5		5	TCP11	6	35086064	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	4405051	35086064	136029003	50	17602											
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43041642	43041643	+	Frame_Shift_Ins	INS	-	-	CAACACGA	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	CAACACGA	43041643	-	CAACACGA	43041642	7	5	272	1	0	1	1	0	0	0	0	0	8343	971	34	0	1929	0	KLC4	6	43041642	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10	7955578	43041642	128073425	51	17603	231	2									
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43041648	43041648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	43041648	T	C	43041648	3	2	272	1	0	0	0	0	1	0	0	0	8343	1464	51	3	1935	3	KLC4	6	43041648	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	6	43041648	128073419	52	17604	231	2									
YIPF3	25844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43480515	43480515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	43480515	A	G	43480515	3	3	272	1	0	0	0	0	1	0	0	0	17491	188	7	3	300	3	YIPF3	6	43480515	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	438867	43480515	127634552	53	17605											
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84371294	84371294	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	84371294	A	T	84371294	3	4	272	1	0	0	0	0	1	0	0	0	14846	420	15	5	2440	5	SNAP91	6	84371294	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	40890779	84371294	86743773	54	17606											
SPACA1	81833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	88775941	88775941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	88775941	C	A	88775941	3	1	272	1	0	0	0	0	1	0	0	0	14985	681	24	4	799	4	SPACA1	6	88775941	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	4404647	88775941	82339126	55	17607											
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90402313	90402313	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	90402313	G	C	90402313	4	2	272	1	0	0	0	0	0	1	0	0	9422	1294	45	4	6514	4	MDN1	6	90402313	Nonsense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	1626372	90402313	80712754	56	17608											
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	105298839	105298839	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	105298839	A	T	105298839	3	4	272	1	0	0	0	0	1	0	0	0	6947	14	1	5	2653	5	HACE1	6	105298839	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	14896526	105298839	65816228	57	17609											
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	107827527	107827527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	107827527	C	A	107827527	3	1	272	1	0	0	0	0	1	0	0	0	14925	739	26	4	327	4	SOBP	6	107827527	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	2528688	107827527	63287540	58	17610											
NUS1	116150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	118015319	118015319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	118015319	G	A	118015319	3	1	272	1	0	0	0	0	1	0	0	0	10784	1377	48	2	677	2	NUS1	6	118015319	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	10187792	118015319	53099748	59	17611											
GPR126	57211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	142691578	142691578	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	142691578	C	T	142691578	2	4	272	1	0	0	0	0	0	0	0	1	6647	813	29	2		2	GPR126	6	142691578	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	24676259	142691578	28423489	60	17612											
ARID1B	57492	broad.mit.edu	37	6	157099342	157099342	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	157099342	C	-	157099342	7	5	272	1	0	1	0	1	0	0	0	0	914	506	18	0	281	0	ARID1B	6	157099342	Frame_Shift_Del	DEL	C	TCGA-B9-A44B-01A-11D-A25F-10	14407764	157099342	14015725	61	17613											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160445676	160445676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	160445676	T	C	160445676	3	2	272	1	0	0	0	0	1	0	0	0	7583	1522	53	3	604	3	IGF2R	6	160445676	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	3346334	160445676	10669391	62	17614											
CARD11	84433	broad.mit.edu	37	7	2959068	2959068	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	2959068	G	A	2959068	2	1	272	1	0	0	0	0	0	0	0	1	2647	1079	38	1		1	CARD11	7	2959068	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		2959068	156179595	63	17615											
NEUROD6	63974	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31378439	31378440	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	AA	31378440	TT	AA	31378439	3	1	272	1	0	0	0	0	1	0	0	0	10358	1838	64	5	573	5	NEUROD6	7	31378439	Missense_Mutation	DNP	TT	TCGA-B9-A44B-01A-11D-A25F-10	28419371	31378439	127760224	64	17616											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31682718	31682718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	31682718	C	A	31682718	3	1	272	1	0	0	0	0	1	0	0	0	2766	477	17	4	1772	4	CCDC129	7	31682718	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	304279	31682718	127455945	65	17617											
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	35733937	35733937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	35733937	C	T	35733937	3	4	272	1	0	0	0	0	1	0	0	0	7071	855	30	2	1248	2	HERPUD2	7	35733937	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	4051219	35733937	123404726	66	17618											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47853600	47853600	+	Missense_Mutation	SNP	C	C	T	rs147316882		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	47853600	C	T	47853600	3	4	272	1	0	0	0	0	1	0	0	0	11971	603	21	2	1487	2	PKD1L1	7	47853600	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	12119663	47853600	111285063	67	17619											
VWC2	375567	hgsc.bcm.edu	37	7	49815193	49815193	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	49815193	C	T	49815193	2	4	272	1	0	0	0	0	0	0	0	1	17255	535	19	1		1	VWC2	7	49815193	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	1961593	49815193	109323470	68	17620											
RHBDD2	57414	broad.mit.edu;bcgsc.ca	37	7	75511278	75511278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	75511278	G	A	75511278	3	1	272	1	0	0	0	0	1	0	0	0	13330	1145	40	1	316	1	RHBDD2	7	75511278	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	25696085	75511278	83627385	69	17621											
POMZP3	22932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	76240801	76240801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	76240801	G	T	76240801	3	4	272	1	0	0	0	0	1	0	0	0	12254	1174	41	4	29	4	POMZP3	7	76240801	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	729523	76240801	82897862	70	17622											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	82579041	82579041	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	82579041	T	-	82579041	7	5	272	1	0	1	0	1	0	0	0	0	11590	1606	56	0	4662	0	PCLO	7	82579041	Frame_Shift_Del	DEL	T	TCGA-B9-A44B-01A-11D-A25F-10	6338240	82579041	76559622	71	17623											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82585266	82585266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	82585266	T	C	82585266	3	2	272	1	0	0	0	0	1	0	0	0	11590	1841	64	3	10526	3	PCLO	7	82585266	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	6225	82585266	76553397	72	17624											
ANKIB1	54467	ucsc.edu;bcgsc.ca	37	7	91957150	91957150	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	91957150	T	C	91957150	2	2	272	1	0	0	0	0	0	0	0	1	630	1800	63	3		3	ANKIB1	7	91957150	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	9371884	91957150	67181513	73	17625											
PRKAR2B	5577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	106799967	106799967	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	106799967	T	A	106799967	4	1	272	1	0	0	0	0	0	1	0	0	12516	1471	51	5	1239	5	PRKAR2B	7	106799967	Nonsense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	14842817	106799967	52338696	74	17626											
ADCK2	90956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140380887	140380887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	140380887	G	T	140380887	3	4	272	1	0	0	0	0	1	0	0	0	289	1174	41	4	1269	4	ADCK2	7	140380887	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	33580920	140380887	18757776	75	17627											
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	155534581	155534582	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	155534582	-	A	155534581	7	5	272	1	0	1	1	0	0	0	0	0	13143	709	25	0	2168	0	RBM33	7	155534581	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10	15153694	155534581	3604082	76	17628											
FUT10	84750	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	33246682	33246683	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	33246683	-	A	33246682	7	5	272	1	0	1	1	0	0	0	0	0	6109	1280	45	0	436	0	FUT10	8	33246682	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10		33246682	113117340	77	17629											
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101276971	101276971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	101276971	G	A	101276971	3	1	272	1	0	0	0	0	1	0	0	0	13483	1144	40	1	1302	1	RNF19A	8	101276971	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	68030289	101276971	45087051	78	17630											
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	108970372	108970372	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	108970372	T	C	108970372	2	2	272	1	0	0	0	0	0	0	0	1	13723	1799	63	3		3	RSPO2	8	108970372	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	7693401	108970372	37393650	79	17631											
EEF1D	1936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144661995	144661995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	144661995	C	G	144661995	3	3	272	1	0	0	0	0	1	0	0	0	4928	912	32	4	36	4	EEF1D	8	144661995	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	35691623	144661995	1702027	80	17632											
STOML2	30968	broad.mit.edu	37	9	35101165	35101165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	35101165	C	A	35101165	3	1	272	1	0	0	0	0	1	0	0	0	15326	797	28	4	395	4	STOML2	9	35101165	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		35101165	106112266	81	17633											
MELK	9833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36583634	36583634	+	Silent	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	36583634	A	G	36583634	2	3	272	1	0	0	0	0	0	0	0	1	9477	117	5	3		3	MELK	9	36583634	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	1482469	36583634	104629797	82	17634											
FUT11	170384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75533456	75533456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	75533456	C	T	75533456	3	4	272	1	0	0	0	0	1	0	0	0	6110	768	27	1	1223	1	FUT11	10	75533456	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		75533456	60001291	83	17635											
GRID1	2894	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	87484287	87484287	+	Silent	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	87484287	T	G	87484287	2	3	272	1	0	0	0	0	0	0	0	1	6778	1451	51	5		5	GRID1	10	87484287	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	11950831	87484287	48050460	84	17636											
SUFU	51684	broad.mit.edu	37	10	104263976	104263982	+	Frame_Shift_Del	DEL	CCCCCGG	CCCCCGG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CCCCCGG	CCCCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	104263982	CCCCCGG	-	104263976	7	5	272	1	0	1	0	1	0	0	0	0	15380	623	22	0	69	0	SUFU	10	104263976	Frame_Shift_Del	DEL	CCCCCGG	TCGA-B9-A44B-01A-11D-A25F-10	16779689	104263976	31270771	85	17637											
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	105205187	105205189	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	105205189	TTC	-	105205187	7	5	272	1	0	1	0	1	0	0	0	0	11624	1725	60	0	5635	0	PDCD11	10	105205187	In_Frame_Del	DEL	TTC	TCGA-B9-A44B-01A-11D-A25F-10	941211	105205187	30329560	86	17638											
MUC2	4583	broad.mit.edu	37	11	1093326	1093326	+	Silent	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	1093326	C	A	1093326	2	1	272	1	0	0	0	0	0	0	0	1	9982	697	25	4		4	MUC2	11	1093326	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		1093326	133913190	87	17639											
DCHS1	8642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6654032	6654032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	6654032	G	T	6654032	3	4	272	1	0	0	0	0	1	0	0	0	4289	1348	47	4	7249	4	DCHS1	11	6654032	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	5560706	6654032	128352484	88	17640											
FBXO3	26273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33770331	33770331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	33770331	C	T	33770331	3	4	272	1	0	0	0	0	1	0	0	0	5746	855	30	2	396	2	FBXO3	11	33770331	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	27116299	33770331	101236185	89	17641											
CD6	923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	60778597	60778605	+	In_Frame_Del	DEL	AGTCACTAT	AGTCACTAT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AGTCACTAT	AGTCACTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	60778605	AGTCACTAT	-	60778597	7	5	272	1	0	1	0	1	0	0	0	0	3030	175	7	0	1162	0	CD6	11	60778597	In_Frame_Del	DEL	AGTCACTAT	TCGA-B9-A44B-01A-11D-A25F-10	27008266	60778597	74227919	90	17642											
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62491416	62491416	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	62491416	C	-	62491416	7	5	272	1	0	1	0	1	0	0	0	0	7282	864	30	0	1570	0	HNRNPUL2	11	62491416	Frame_Shift_Del	DEL	C	TCGA-B9-A44B-01A-11D-A25F-10	1712819	62491416	72515100	91	17643											
PPP2R5B	5526	hgsc.bcm.edu	37	11	64694184	64694184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	64694184	A	G	64694184	3	3	272	1	0	0	0	0	1	0	0	0	12403	347	12	3	206	3	PPP2R5B	11	64694184	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	2202768	64694184	70312332	92	17644											
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93797512	93797529	+	In_Frame_Del	DEL	ATTCAGGGACACGGAATG	ATTCAGGGACACGGAATG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	ATTCAGGGACACGGAATG	ATTCAGGGACACGGAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	93797529	ATTCAGGGACACGGAATG	-	93797512	7	5	272	1	0	1	0	1	0	0	0	0	7062	449	16	0	658	0	HEPHL1	11	93797512	In_Frame_Del	DEL	ATTCAGGGACACGGAATG	TCGA-B9-A44B-01A-11D-A25F-10	29103328	93797512	41209004	93	17645											
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118509935	118509935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	118509935	G	A	118509935	3	1	272	1	0	0	0	0	1	0	0	0	11858	1000	35	2	2744	2	PHLDB1	11	118509935	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	24712423	118509935	16496581	94	17646											
CACNA2D4	93589	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	1902856	1902856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	1902856	A	G	1902856	3	3	272	1	0	0	0	0	1	0	0	0	2553	159	6	3	38	3	CACNA2D4	12	1902856	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10		1902856	131949039	95	17647											
KIF21A	55605	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	39726729	39726729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	39726729	G	C	39726729	3	2	272	1	0	0	0	0	1	0	0	0	8295	1357	47	4	2436	4	KIF21A	12	39726729	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	37823873	39726729	94125166	96	17648											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46205220	46205221	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	46205221	AA	-	46205220	7	5	272	1	0	1	0	1	0	0	0	0	915	247	9	0	318	0	ARID2	12	46205220	Frame_Shift_Del	DEL	AA	TCGA-B9-A44B-01A-11D-A25F-10	6478491	46205220	87646675	97	17649											
PRPH	5630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49690229	49690229	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	49690229	C	T	49690229	2	4	272	1	0	0	0	0	0	0	0	1	12586	581	21	2		2	PRPH	12	49690229	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	3485009	49690229	84161666	98	17650											
KCNH3	23416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49951017	49951018	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	49951018	AC	-	49951017	7	5	272	1	0	1	0	1	0	0	0	0	8040	275	10	0	2681	0	KCNH3	12	49951017	Frame_Shift_Del	DEL	AC	TCGA-B9-A44B-01A-11D-A25F-10	260788	49951017	83900878	99	17651											
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52754642	52754642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	52754642	C	T	52754642	3	4	272	1	0	0	0	0	1	0	0	0	8506	710	25	2	8	2	KRT85	12	52754642	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	2803625	52754642	81097253	100	17652											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	70932007	70932007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	70932007	A	T	70932007	3	4	272	1	0	0	0	0	1	0	0	0	12809	214	8	5	801	5	PTPRB	12	70932007	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	18177365	70932007	62919888	101	17653											
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	94965249	94965249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	94965249	T	C	94965249	3	2	272	1	0	0	0	0	1	0	0	0	16006	1406	49	3	41	3	TMCC3	12	94965249	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	24033242	94965249	38886646	102	17654											
PXN	5829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120653013	120653013	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	120653013	G	-	120653013	7	5	272	1	0	1	0	1	0	0	0	0	12865	1357	47	0	798	0	PXN	12	120653013	Frame_Shift_Del	DEL	G	TCGA-B9-A44B-01A-11D-A25F-10	25687764	120653013	13198882	103	17655											
BRCA2	675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32912283	32912283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	32912283	A	G	32912283	3	3	272	1	0	0	0	0	1	0	0	0	1501	14	1	3	3829	3	BRCA2	13	32912283	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10		32912283	82257595	104	17656											
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	95840715	95840715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	95840715	C	A	95840715	3	1	272	1	0	0	0	0	1	0	0	0	55	797	28	4	2769	4	ABCC4	13	95840715	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	62928432	95840715	19329163	105	17657											
DOCK9	23348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99449739	99449739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	99449739	T	C	99449739	3	2	272	1	0	0	0	0	1	0	0	0	4696	1493	52	3	259	3	DOCK9	13	99449739	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	3609024	99449739	15720139	106	17658											
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23549484	23549484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	23549484	C	G	23549484	3	3	272	1	0	0	0	0	1	0	0	0	142	864	30	4	2994	4	ACIN1	14	23549484	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		23549484	83800056	107	17659											
SAMD4A	23034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55203876	55203876	+	Missense_Mutation	SNP	C	C	T	rs138744574	byfrequency;alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	55203876	C	T	55203876	3	4	272	1	0	0	0	0	1	0	0	0	13834	681	24	2	857	2	SAMD4A	14	55203876	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	31654392	55203876	52145664	108	17660											
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64522891	64522891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	64522891	C	A	64522891	3	1	272	1	0	0	0	0	1	0	0	0	15458	739	26	4	10164	4	SYNE2	14	64522891	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	9319015	64522891	42826649	109	17661											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64610587	64610587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	64610587	A	G	64610587	3	3	272	1	0	0	0	0	1	0	0	0	15458	449	16	3	15730	3	SYNE2	14	64610587	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	87696	64610587	42738953	110	17662											
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64924942	64924942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	64924942	T	C	64924942	3	2	272	1	0	0	0	0	1	0	0	0	9934	1464	51	3	2835	3	MTHFD1	14	64924942	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	314355	64924942	42424598	111	17663											
RDH11	51109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68159767	68159767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	68159767	T	G	68159767	3	3	272	1	0	0	0	0	1	0	0	0	13203	1841	64	5	903	5	RDH11	14	68159767	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	3234825	68159767	39189773	112	17664											
FLVCR2	55640	broad.mit.edu;bcgsc.ca	37	14	76107380	76107380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	76107380	G	A	76107380	3	1	272	1	0	0	0	0	1	0	0	0	5953	1116	39	1	1344	1	FLVCR2	14	76107380	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	7947613	76107380	31242160	113	17665											
WDR20	91833	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102675669	102675669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	102675669	C	A	102675669	3	1	272	1	0	0	0	0	1	0	0	0	17292	681	24	4	1189	4	WDR20	14	102675669	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	26568289	102675669	4673871	114	17666											
C15orf41	84529	broad.mit.edu;bcgsc.ca	37	15	37002072	37002072	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	37002072	T	A	37002072	3	1	272	1	0	0	0	0	1	0	0	0	1797	1406	49	5	664	5	C15orf41	15	37002072	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10		37002072	65529320	115	17667											
NUSAP1	51203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41657726	41657726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	41657726	A	G	41657726	3	3	272	1	0	0	0	0	1	0	0	0	10785	391	14	3	813	3	NUSAP1	15	41657726	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	4655654	41657726	60873666	116	17668											
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43771711	43771711	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	43771711	T	C	43771711	2	2	272	1	0	0	0	0	0	0	0	1	16395	1606	56	3		3	TP53BP1	15	43771711	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	2113985	43771711	58759681	117	17669											
CATSPER2	117155	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43940128	43940128	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	43940128	G	A	43940128	2	1	272	1	0	0	0	0	0	0	0	1	2690	1280	45	2		2	CATSPER2	15	43940128	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	168417	43940128	58591264	118	17670											
DAPK2	23604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64204316	64204316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	64204316	C	G	64204316	3	3	272	1	0	0	0	0	1	0	0	0	4238	738	26	4	185	4	DAPK2	15	64204316	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	20264188	64204316	38327076	119	17671											
SENP8	123228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72432461	72432461	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	72432461	A	T	72432461	3	4	272	1	0	0	0	0	1	0	0	0	14065	391	14	5	499	5	SENP8	15	72432461	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	8228145	72432461	30098931	120	17672											
PARP6	56965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72543559	72543559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	72543559	G	A	72543559	3	1	272	1	0	0	0	0	1	0	0	0	11471	1261	44	2	627	2	PARP6	15	72543559	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	111098	72543559	29987833	121	17673											
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	89801970	89801970	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	89801970	A	-	89801970	7	5	272	1	0	1	0	1	0	0	0	0	5676	233	9	0	126	0	FANCI	15	89801970	Frame_Shift_Del	DEL	A	TCGA-B9-A44B-01A-11D-A25F-10	17258411	89801970	12729422	122	17674											
OR4F6	390648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	102346642	102346642	+	Silent	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	102346642	G	T	102346642	2	4	272	1	0	0	0	0	0	0	0	1	11073	1364	48	4		4	OR4F6	15	102346642	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	12544672	102346642	184750	123	17675											
PLK1	5347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23690422	23690422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	23690422	C	A	23690422	3	1	272	1	0	0	0	0	1	0	0	0	12101	652	23	4	171	4	PLK1	16	23690422	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		23690422	66664331	124	17676											
LONP2	83752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48311386	48311386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	48311386	T	G	48311386	3	3	272	1	0	0	0	0	1	0	0	0	8900	1609	56	5	1409	5	LONP2	16	48311386	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	24620964	48311386	42043367	125	17677											
MINK1	50488	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4789856	4789856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	4789856	A	G	4789856	3	3	272	1	0	0	0	0	1	0	0	0	9594	304	11	3	661	3	MINK1	17	4789856	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10		4789856	76405354	126	17678											
GUCY2D	3000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7910749	7910749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	7910749	G	A	7910749	3	1	272	1	0	0	0	0	1	0	0	0	6904	1116	39	1	1487	1	GUCY2D	17	7910749	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	3120893	7910749	73284461	127	17679											
MAP2K3	5606	broad.mit.edu;bcgsc.ca	37	17	21208389	21208389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	21208389	C	A	21208389	3	1	272	1	0	0	0	0	1	0	0	0	9245	506	18	4	757	4	MAP2K3	17	21208389	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	13297640	21208389	59986821	128	17680											
SGK494	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26938587	26938587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	26938587	A	G	26938587	3	3	272	1	0	0	0	0	1	0	0	0	14226	217	8	3	439	3	SGK494	17	26938587	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	5730198	26938587	54256623	129	17681											
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28296149	28296149	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	28296149	A	T	28296149	3	4	272	1	0	0	0	0	1	0	0	0	4940	40	2	5	545	5	EFCAB5	17	28296149	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	1357562	28296149	52899061	130	17682											
LRRC37B	114659	hgsc.bcm.edu;bcgsc.ca	37	17	30349520	30349520	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	30349520	C	-	30349520	7	5	272	1	0	1	0	1	0	0	0	0	9001	739	26	0	1357	0	LRRC37B	17	30349520	Frame_Shift_Del	DEL	C	TCGA-B9-A44B-01A-11D-A25F-10	2053371	30349520	50845690	131	17683											
PTRF	284119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40557359	40557359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	40557359	T	A	40557359	3	1	272	1	0	0	0	0	1	0	0	0	12828	1606	56	5	657	5	PTRF	17	40557359	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	10207839	40557359	40637851	132	17684											
MBTD1	54799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	49302371	49302371	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	49302371	A	C	49302371	3	2	272	1	0	0	0	0	1	0	0	0	9367	217	8	5	1794	5	MBTD1	17	49302371	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	8745012	49302371	31892839	133	17685											
AKAP1	8165	ucsc.edu;bcgsc.ca	37	17	55197616	55197616	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	55197616	G	A	55197616	2	1	272	1	0	0	0	0	0	0	0	1	445	1364	48	2		2	AKAP1	17	55197616	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	5895245	55197616	25997594	134	17686											
BZRAP1	9256	broad.mit.edu;bcgsc.ca	37	17	56382447	56382447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	56382447	G	A	56382447	3	1	272	1	0	0	0	0	1	0	0	0	1579	1232	43	2	62	2	BZRAP1	17	56382447	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	1184831	56382447	24812763	135	17687											
MED13	9969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60042511	60042511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	C	60042511	T	C	60042511	3	2	272	1	0	0	0	0	1	0	0	0	9437	1493	52	3	1868	3	MED13	17	60042511	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	3660064	60042511	21152699	136	17688											
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61623068	61623068	+	Silent	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	61623068	A	G	61623068	2	3	272	1	0	0	0	0	0	0	0	1	8043	146	6	3		3	KCNH6	17	61623068	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	1580557	61623068	19572142	137	17689											
NAT9	26151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72768142	72768142	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	72768142	T	G	72768142	3	3	272	1	0	0	0	0	1	0	0	0	10189	1493	52	5	185	5	NAT9	17	72768142	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	11145074	72768142	8427068	138	17690											
CARD14	79092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78166392	78166392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	78166392	G	A	78166392	3	1	272	1	0	0	0	0	1	0	0	0	2648	1058	37	1	1360	1	CARD14	17	78166392	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	5398250	78166392	3028818	139	17691											
NPTX1	4884	hgsc.bcm.edu;bcgsc.ca	37	17	78449367	78449367	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	78449367	A	-	78449367	7	5	272	1	0	1	0	1	0	0	0	0	10609	275	10	0	718	0	NPTX1	17	78449367	Frame_Shift_Del	DEL	A	TCGA-B9-A44B-01A-11D-A25F-10	282975	78449367	2745843	140	17692											
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29038453	29038453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	G	29038453	T	G	29038453	3	3	272	1	0	0	0	0	1	0	0	0	4780	1551	54	5	276	5	DSG3	18	29038453	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10		29038453	49038795	141	17693											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1059069	1059069	+	Silent	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	1059069	G	T	1059069	2	4	272	1	0	0	0	0	0	0	0	1	37	1161	41	4		4	ABCA7	19	1059069	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		1059069	58069914	142	17694											
ZNF799	90576	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12502558	12502558	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	12502558	C	T	12502558	2	4	272	1	0	0	0	0	0	0	0	1	18178	755	27	1		1	ZNF799	19	12502558	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	11443489	12502558	46626425	143	17695											
CD97	976	hgsc.bcm.edu;broad.mit.edu	37	19	14517156	14517156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	14517156	G	T	14517156	3	4	272	1	0	0	0	0	1	0	0	0	3051	1319	46	4	1893	4	CD97	19	14517156	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	2014598	14517156	44611827	144	17696											
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	16548668	16548669	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	16548669	AT	-	16548668	7	5	272	1	0	1	0	1	0	0	0	0	5195	224	8	0	2448	0	EPS15L1	19	16548668	Frame_Shift_Del	DEL	AT	TCGA-B9-A44B-01A-11D-A25F-10	2031512	16548668	42580315	145	17697											
IFI30	10437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18288015	18288015	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	18288015	C	T	18288015	2	4	272	1	0	0	0	0	0	0	0	1	7522	755	27	1		1	IFI30	19	18288015	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	1739347	18288015	40840968	146	17698											
ZNF507	22847	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	32873421	32873421	+	Silent	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	32873421	T	A	32873421	2	1	272	1	0	0	0	0	0	0	0	1	17965	1538	54	5		5	ZNF507	19	32873421	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	14585406	32873421	26255562	147	17699											
CEACAM20	125931	broad.mit.edu;bcgsc.ca	37	19	45016957	45016957	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	45016957	C	T	45016957	2	4	272	1	0	0	0	0	0	0	0	1	3193	893	31	1		1	CEACAM20	19	45016957	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	12143536	45016957	14112026	148	17700											
FAM83E	54854	broad.mit.edu	37	19	49114033	49114033	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	49114033	G	A	49114033	2	1	272	1	0	0	0	0	0	0	0	1	5644	1190	42	2		2	FAM83E	19	49114033	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	4097076	49114033	10014950	149	17701											
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	58385790	G	T	58385790	3	4	272	1	0	0	0	0	1	0	0	0	18188	1000	35	4	1603	4	ZNF814	19	58385790	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	9271757	58385790	743193	150	17702	232	3									
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	58385793	C	T	58385793	3	4	272	1	0	0	0	0	1	0	0	0	18188	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	3	58385793	743190	151	17703	232	3									
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	TT	58385799	CC	TT	58385798	3	4	272	1	0	0	0	0	1	0	0	0	18188	842	30	2	1611	2	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-B9-A44B-01A-11D-A25F-10	5	58385798	743185	152	17704	232	3									
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40143495	40143495	+	Silent	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	40143495	C	A	40143495	2	1	272	1	0	0	0	0	0	0	0	1	3331	871	31	4		4	CHD6	20	40143495	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		40143495	22882025	153	17705											
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42328636	42328636	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	42328636	C	T	42328636	2	4	272	1	0	0	0	0	0	0	0	1	10017	845	30	2		2	MYBL2	20	42328636	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	2185141	42328636	20696884	154	17706											
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44181865	44181865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	44181865	G	T	44181865	3	4	272	1	0	0	0	0	1	0	0	0	17368	1174	41	4	237	4	WFDC8	20	44181865	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	1853229	44181865	18843655	155	17707											
BCAS4	55653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49458324	49458324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	49458324	C	T	49458324	3	4	272	1	0	0	0	0	1	0	0	0	1353	478	17	2	390	2	BCAS4	20	49458324	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	5276459	49458324	13567196	156	17708											
NTSR1	4923	broad.mit.edu;bcgsc.ca	37	20	61389632	61389632	+	Missense_Mutation	SNP	G	G	A	rs201489051		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	61389632	G	A	61389632	3	1	272	1	0	0	0	0	1	0	0	0	10717	1087	38	1	941	1	NTSR1	20	61389632	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	11931308	61389632	1635888	157	17709											
POTEH	23784	broad.mit.edu;bcgsc.ca	37	22	16266950	16266950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	16266950	G	T	16266950	3	4	272	1	0	0	0	0	1	0	0	0	12274	1029	36	4	146	4	POTEH	22	16266950	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		16266950	35037616	158	17710											
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18029082	18029082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	18029082	G	A	18029082	3	1	272	1	0	0	0	0	1	0	0	0	3208	1319	46	2	4103	2	CECR2	22	18029082	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	1762132	18029082	33275484	159	17711											
ZDHHC8	29801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20128194	20128194	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	T	20128194	A	T	20128194	3	4	272	1	0	0	0	0	1	0	0	0	17633	246	9	5	737	5	ZDHHC8	22	20128194	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	2099112	20128194	31176372	160	17712											
C22orf42	150297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	32555017	32555019	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	-	32555019	CTG	-	32555017	7	5	272	1	0	1	0	1	0	0	0	0	2151	564	20	0	605	0	C22orf42	22	32555017	In_Frame_Del	DEL	CTG	TCGA-B9-A44B-01A-11D-A25F-10	12426823	32555017	18749549	161	17713											
ACOT9	23597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	23723676	23723676	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	23723676	G	A	23723676	2	1	272	1	0	0	0	0	0	0	0	1	157	1165	41	2		2	ACOT9	23	23723676	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		23723676	131546884	162	17714											
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	24744126	24744126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	24744126	T	A	24744126	3	1	272	1	0	0	0	0	1	0	0	0	12194	1406	49	5	1378	5	POLA1	23	24744126	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	1020450	24744126	130526434	163	17715											
OPHN1	4983	bcgsc.ca	37	X	67283721	67283721	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	67283721	G	A	67283721	2	1	272	1	0	0	0	0	0	0	0	1	10882	1219	43	2		2	OPHN1	23	67283721	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	42539595	67283721	87986839	164	17716											
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	X	107938134	107938134	+	Missense_Mutation	SNP	G	G	A	rs104886424		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	A	107938134	G	A	107938134	3	1	272	1	0	0	0	0	1	0	0	0	3696	1348	47	2	4991	2	COL4A5	23	107938134	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	40654413	107938134	47332426	165	17717											
HP1BP3	50809	bcgsc.ca	37	1	21071364	21071364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	C	21071364	T	C	21071364	3	2	273	1	0	0	0	0	1	0	0	0	7335	1580	55	3	77	3	HP1BP3	1	21071364	Missense_Mutation	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10		21071364	228179257	1	17718											
DHX9	1660	ucsc.edu;bcgsc.ca	37	1	182856445	182856445	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	G	182856445	C	G	182856445	3	3	273	1	0	0	0	0	1	0	0	0	4518	913	32	4	3795	4	DHX9	1	182856445	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	161785081	182856445	66394176	2	17719											
AGBL5	60509	broad.mit.edu	37	2	27276801	27276801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	T	27276801	G	T	27276801	3	4	273	1	0	0	0	0	1	0	0	0	378	1145	40	4	435	4	AGBL5	2	27276801	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		27276801	215922572	3	17720											
SPTBN1	6711	ucsc.edu;bcgsc.ca	37	2	54855278	54855278	+	Silent	SNP	G	G	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	C	54855278	G	C	54855278	2	2	273	1	0	0	0	0	0	0	0	1	15131	1335	47	4		4	SPTBN1	2	54855278	Silent	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	27578477	54855278	188344095	4	17721											
ERCC3	2071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128051174	128051174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	G	128051174	C	G	128051174	3	3	273	1	0	0	0	0	1	0	0	0	5216	739	26	4	2255	4	ERCC3	2	128051174	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	73195896	128051174	115148199	5	17722											
OSBPL6	114880	bcgsc.ca	37	2	179255928	179255928	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	A	179255928	G	A	179255928	2	1	273	1	0	0	0	0	0	0	0	1	11288	1020	36	2		2	OSBPL6	2	179255928	Silent	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	51204754	179255928	63943445	6	17723											
PIK3R4	30849	broad.mit.edu;bcgsc.ca	37	3	130425829	130425831	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	-	130425831	GAG	-	130425829	7	5	273	1	0	1	0	1	0	0	0	0	11928	942	33	0	1432	0	PIK3R4	3	130425829	In_Frame_Del	DEL	GAG	TCGA-B9-A5W7-01A-11D-A31X-10		130425829	67596601	7	17724											
MUC4	4585	broad.mit.edu	37	3	195488976	195488976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	A	195488976	G	A	195488976	3	1	273	1	0	0	0	0	1	0	0	0	9985	1116	39	1	1792	1	MUC4	3	195488976	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	65063147	195488976	2533454	8	17725											
COPS4	51138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	83996480	83996480	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	-	83996480	A	-	83996480	7	5	273	1	0	1	0	1	0	0	0	0	3737	188	7	0	1156	0	COPS4	4	83996480	Frame_Shift_Del	DEL	A	TCGA-B9-A5W7-01A-11D-A31X-10		83996480	107157796	9	17726											
IL6ST	3572	ucsc.edu	37	5	55237518	55237518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	T	55237518	C	T	55237518	3	4	273	1	0	0	0	0	1	0	0	0	7710	864	30	2	611	2	IL6ST	5	55237518	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10		55237518	125677742	10	17727											
NKX2-5	1482	broad.mit.edu	37	5	172659920	172659920	+	Silent	SNP	C	C	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	G	172659920	C	G	172659920	2	3	273	1	0	0	0	0	0	0	0	1	10460	755	27	4		4	NKX2-5	5	172659920	Silent	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	117422402	172659920	8255340	11	17728											
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	6	57393114	57393114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	G	57393114	A	G	57393114	3	3	273	1	0	0	0	0	1	0	0	0	12501	217	8	3	794	3	PRIM2	6	57393114	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10		57393114	113721953	12	17729											
TNRC18	84629	broad.mit.edu	37	7	5352666	5352668	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	-	5352668	GAG	-	5352666	7	5	273	1	0	1	0	1	0	0	0	0	16351	1294	45	0	1066	0	TNRC18	7	5352666	In_Frame_Del	DEL	GAG	TCGA-B9-A5W7-01A-11D-A31X-10		5352666	153785997	13	17730											
PHKG1	5260	ucsc.edu;bcgsc.ca	37	7	56151013	56151013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	C	56151013	A	C	56151013	3	2	273	1	0	0	0	0	1	0	0	0	11853	72	3	5	678	5	PHKG1	7	56151013	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10	50798347	56151013	102987650	14	17731											
SBDS	51119	ucsc.edu;bcgsc.ca	37	7	66456233	66456233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	C	66456233	A	C	66456233	3	2	273	1	0	0	0	0	1	0	0	0	13870	217	8	5	245	5	SBDS	7	66456233	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10	10305220	66456233	92682430	15	17732											
CACNA2D1	781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	81588631	81588631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	G	81588631	T	G	81588631	3	3	273	1	0	0	0	0	1	0	0	0	2550	1638	57	5	164	5	CACNA2D1	7	81588631	Missense_Mutation	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10	15132398	81588631	77550032	16	17733											
LAMB1	3912	broad.mit.edu	37	7	107569606	107569607	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	AA	107569607	TC	AA	107569606	3	1	273	1	0	0	0	0	1	0	0	0	8617	1783	62	5	586	5	LAMB1	7	107569606	Missense_Mutation	DNP	TC	TCGA-B9-A5W7-01A-11D-A31X-10	25980975	107569606	51569057	17	17734											
LMOD2	442721	broad.mit.edu	37	7	123302918	123302918	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	C	123302918	T	C	123302918	2	2	273	1	0	0	0	0	0	0	0	1	8864	1538	54	3		3	LMOD2	7	123302918	Silent	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10	15733312	123302918	35835745	18	17735											
TSPAN33	340348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128804350	128804350	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	A	128804350	C	A	128804350	2	1	273	1	0	0	0	0	0	0	0	1	16660	581	21	4		4	TSPAN33	7	128804350	Silent	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	5501432	128804350	30334313	19	17736											
MAFA	389692	broad.mit.edu	37	8	144511742	144511742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	A	144511742	G	A	144511742	3	1	273	1	0	0	0	0	1	0	0	0	9164	1086	38	1	230	1	MAFA	8	144511742	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		144511742	1852280	20	17737											
INPP5E	56623	ucsc.edu	37	9	139327715	139327715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	T	139327715	G	T	139327715	3	4	273	1	0	0	0	0	1	0	0	0	7764	1058	37	4	911	4	INPP5E	9	139327715	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		139327715	1885716	21	17738											
TM7SF2	7108	broad.mit.edu	37	11	64883476	64883476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	G	64883476	A	G	64883476	3	3	273	1	0	0	0	0	1	0	0	0	15986	188	7	3	1246	3	TM7SF2	11	64883476	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10		64883476	70123040	22	17739											
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72945937	72945937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	T	72945937	C	T	72945937	3	4	273	1	0	0	0	0	1	0	0	0	11359	768	27	1	735	1	P2RY2	11	72945937	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	8062461	72945937	62060579	23	17740											
MCAM	4162	broad.mit.edu	37	11	119187759	119187761	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	-	119187761	CAG	-	119187759	7	5	273	1	0	1	0	1	0	0	0	0	9375	478	17	0	1951	0	MCAM	11	119187759	In_Frame_Del	DEL	CAG	TCGA-B9-A5W7-01A-11D-A31X-10	46241822	119187759	15818757	24	17741											
SMARCC2	6601	broad.mit.edu	37	12	56558430	56558430	+	Silent	SNP	A	A	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	C	56558430	A	C	56558430	2	2	273	1	0	0	0	0	0	0	0	1	14789	405	14	5		5	SMARCC2	12	56558430	Silent	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10		56558430	77293465	25	17742											
SLITRK5	26050	ucsc.edu;bcgsc.ca	37	13	88327922	88327922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	C	88327922	G	C	88327922	3	2	273	1	0	0	0	0	1	0	0	0	14759	1281	45	4	281	4	SLITRK5	13	88327922	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		88327922	26841956	26	17743											
OR4N2	390429	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20296302	20296302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	A	20296302	C	A	20296302	3	1	273	1	0	0	0	0	1	0	0	0	11084	710	25	4	697	4	OR4N2	14	20296302	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10		20296302	87053238	27	17744											
SETD3	84193	bcgsc.ca	37	14	99925507	99925507	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	T	99925507	A	T	99925507	3	4	273	1	0	0	0	0	1	0	0	0	14145	11	1	5	1505	5	SETD3	14	99925507	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10	79629205	99925507	7424033	28	17745											
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	104639376	104639376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	A	104639376	G	A	104639376	3	1	273	1	0	0	0	0	1	0	0	0	8301	1087	38	1	1513	1	KIF26A	14	104639376	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	4713869	104639376	2710164	29	17746											
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058942	79058944	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	-	79058944	GCA	-	79058942	7	5	273	1	0	1	0	1	0	0	0	0	271	1087	38	0	1773	0	ADAMTS7	15	79058942	In_Frame_Del	DEL	GCA	TCGA-B9-A5W7-01A-11D-A31X-10		79058942	23472450	30	17747											
CNOT1	23019	broad.mit.edu	37	16	58566190	58566190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	C	58566190	T	C	58566190	3	2	273	1	0	0	0	0	1	0	0	0	3619	1493	52	3	1161	3	CNOT1	16	58566190	Missense_Mutation	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10		58566190	31788563	31	17748											
KRTAP4-11	653240	broad.mit.edu	37	17	39274432	39274432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	T	39274432	C	T	39274432	3	4	273	1	0	0	0	0	1	0	0	0	8556	478	17	2	455	2	KRTAP4-11	17	39274432	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10		39274432	41920778	32	17749											
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42525580	42525580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	A	42525580	G	A	42525580	3	1	273	1	0	0	0	0	1	0	0	0	6784	1145	40	1	1222	1	GRIK5	19	42525580	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		42525580	16603403	33	17750											
CRX	1406	broad.mit.edu	37	19	48343201	48343201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	T	48343201	G	T	48343201	3	4	273	1	0	0	0	0	1	0	0	0	3904	1319	46	4	887	4	CRX	19	48343201	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	5817621	48343201	10785782	34	17751											
ZNF808	388558	broad.mit.edu	37	19	53057180	53057180	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	C	53057180	T	C	53057180	2	2	273	1	0	0	0	0	0	0	0	1	18185	1403	49	3		3	ZNF808	19	53057180	Silent	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10	4713979	53057180	6071803	35	17752											
TTLL12	23170	ucsc.edu;bcgsc.ca	37	22	43569808	43569808	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	T	43569808	G	T	43569808	4	4	273	1	0	0	0	0	0	1	0	0	16737	1311	46	4	704	4	TTLL12	22	43569808	Nonsense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		43569808	7734758	36	17753											
RBM3	5935	broad.mit.edu	37	X	48434994	48434994	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	G	48434994	T	G	48434994	5	3	273	1	0	0	0	0	0	0	1	0	13142	1710	59	5	429	5	RBM3	23	48434994	Splice_Site	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10		48434994	106835566	37	17754											
ACTRT2	140625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2938841	2938841	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	2938841	C	A	2938841	2	1	274	1	0	0	0	0	0	0	0	1	219	842	30	4		4	ACTRT2	1	2938841	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		2938841	246311780	1	17755											
TMOD4	29765	broad.mit.edu	37	1	151146999	151146999	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	151146999	T	A	151146999	4	1	274	1	0	0	0	0	0	1	0	0	16248	1617	56	5	921	5	TMOD4	1	151146999	Nonsense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	148208158	151146999	98103622	2	17756											
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	164761953	164761953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	164761953	C	T	164761953	3	4	274	1	0	0	0	0	1	0	0	0	11499	536	19	1	498	1	PBX1	1	164761953	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	13614954	164761953	84488668	3	17757											
SUSD4	55061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223438095	223438095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	223438095	G	A	223438095	3	1	274	1	0	0	0	0	1	0	0	0	15422	1232	43	2	1044	2	SUSD4	1	223438095	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	58676142	223438095	25812526	4	17758											
CAD	790	broad.mit.edu	37	2	27462296	27462296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	27462296	G	A	27462296	3	1	274	1	0	0	0	0	1	0	0	0	2567	1087	38	1	5481	1	CAD	2	27462296	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		27462296	215737077	5	17759											
NEUROD1	4760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	182543048	182543051	+	Frame_Shift_Del	DEL	GGTG	GGTG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GGTG	GGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	182543051	GGTG	-	182543048	7	5	274	1	0	1	0	1	0	0	0	0	10355	1335	47	0	534	0	NEUROD1	2	182543048	Frame_Shift_Del	DEL	GGTG	TCGA-B9-A5W8-01A-11D-A28G-10	155080752	182543048	60656325	6	17760											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233651899	233651899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	233651899	G	C	233651899	3	2	274	1	0	0	0	0	1	0	0	0	6385	1232	43	4	668	4	GIGYF2	2	233651899	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	51108851	233651899	9547474	7	17761											
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13438880	13438880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	13438880	T	C	13438880	3	2	274	1	0	0	0	0	1	0	0	0	10767	1609	56	3	5402	3	NUP210	3	13438880	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10		13438880	184583550	8	17762											
NME6	10201	broad.mit.edu	37	3	48336157	48336157	+	Silent	SNP	T	T	C	rs148416956	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	48336157	T	C	48336157	2	2	274	1	0	0	0	0	0	0	0	1	10502	1509	53	3		3	NME6	3	48336157	Silent	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	34897277	48336157	149686273	9	17763											
RBM5	10181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50147868	50147868	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	50147868	T	C	50147868	2	2	274	1	0	0	0	0	0	0	0	1	13156	1509	53	3		3	RBM5	3	50147868	Silent	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	1811711	50147868	147874562	10	17764											
GOLIM4	27333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	167747034	167747034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	167747034	T	C	167747034	3	2	274	1	0	0	0	0	1	0	0	0	6573	1580	55	3	624	3	GOLIM4	3	167747034	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	117599166	167747034	30275396	11	17765											
HTT	3064	broad.mit.edu	37	4	3123099	3123099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	3123099	A	C	3123099	3	2	274	1	0	0	0	0	1	0	0	0	7464	159	6	5	1247	5	HTT	4	3123099	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10		3123099	188031177	12	17766											
EVC	2121	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	5754739	5754739	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	5754739	G	A	5754739	2	1	274	1	0	0	0	0	0	0	0	1	5287	962	34	2		2	EVC	4	5754739	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	2631640	5754739	185399537	13	17767											
KIAA0232	9778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	6860177	6860177	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	6860177	G	A	6860177	2	1	274	1	0	0	0	0	0	0	0	1	8170	991	35	2		2	KIAA0232	4	6860177	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	1105438	6860177	184294099	14	17768											
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40818110	40818110	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	40818110	T	A	40818110	3	1	274	1	0	0	0	0	1	0	0	0	761	1535	53	5	4	5	APBB2	4	40818110	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	33957933	40818110	150336166	15	17769											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48536646	48536646	+	Silent	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	48536646	A	G	48536646	2	3	274	1	0	0	0	0	0	0	0	1	6071	272	10	3		3	FRYL	4	48536646	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	7718536	48536646	142617630	16	17770											
SMARCAD1	56916	broad.mit.edu	37	4	95204298	95204298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	95204298	C	G	95204298	3	3	274	1	0	0	0	0	1	0	0	0	14785	507	18	4	2841	4	SMARCAD1	4	95204298	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	46667652	95204298	95949978	17	17771											
BBS7	55212	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122774226	122774226	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	122774226	T	A	122774226	3	1	274	1	0	0	0	0	1	0	0	0	1341	1667	58	5	1466	5	BBS7	4	122774226	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	27569928	122774226	68380050	18	17772											
PDLIM4	8572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131602211	131602211	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	131602211	C	T	131602211	2	4	274	1	0	0	0	0	0	0	0	1	11689	477	17	2		2	PDLIM4	5	131602211	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		131602211	49313049	19	17773											
SLC22A4	6583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131647952	131647952	+	Silent	SNP	A	A	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	131647952	A	C	131647952	2	2	274	1	0	0	0	0	0	0	0	1	14469	175	7	5		5	SLC22A4	5	131647952	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	45741	131647952	49267308	20	17774											
TIFAB	497189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	134785315	134785315	+	Silent	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	134785315	G	C	134785315	2	2	274	1	0	0	0	0	0	0	0	1	15907	929	33	4		4	TIFAB	5	134785315	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	3137363	134785315	46129945	21	17775											
PCDHGA1	56114	broad.mit.edu	37	5	140710540	140710540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	140710540	G	T	140710540	3	4	274	1	0	0	0	0	1	0	0	0	11557	1087	38	4	291	4	PCDHGA1	5	140710540	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	5925225	140710540	40204720	22	17776											
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161116041	161116041	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	161116041	T	C	161116041	2	2	274	1	0	0	0	0	0	0	0	1	6172	1403	49	3		3	GABRA6	5	161116041	Silent	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	20405501	161116041	19799219	23	17777											
DTNBP1	84062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	15523339	15523339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	15523339	C	G	15523339	3	3	274	1	0	0	0	0	1	0	0	0	4792	652	23	4	136	4	DTNBP1	6	15523339	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		15523339	155591728	24	17778											
ACOT13	55856	broad.mit.edu;bcgsc.ca	37	6	24701750	24701750	+	Silent	SNP	A	A	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	24701750	A	T	24701750	2	4	274	1	0	0	0	0	0	0	0	1	151	233	9	5		5	ACOT13	6	24701750	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	9178411	24701750	146413317	25	17779											
HIST1H2AL	8332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	27833355	27833357	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	27833357	AAG	-	27833355	7	5	274	1	0	1	0	1	0	0	0	0	7145	131	5	0	225	0	HIST1H2AL	6	27833355	In_Frame_Del	DEL	AAG	TCGA-B9-A5W8-01A-11D-A28G-10	3131605	27833355	143281712	26	17780											
HIST1H3J	8356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27858516	27858516	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	27858516	T	G	27858516	3	3	274	1	0	0	0	0	1	0	0	0	7171	1792	62	5	359	5	HIST1H3J	6	27858516	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	25161	27858516	143256551	27	17781											
DNAH8	1769	broad.mit.edu	37	6	38875811	38875811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	38875811	G	A	38875811	3	1	274	1	0	0	0	0	1	0	0	0	4609	1087	38	1	9015	1	DNAH8	6	38875811	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	11017295	38875811	132239256	28	17782											
ENPP1	5167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132171207	132171207	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	132171207	A	C	132171207	3	2	274	1	0	0	0	0	1	0	0	0	5131	14	1	5	401	5	ENPP1	6	132171207	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	93295396	132171207	38943860	29	17783											
MICALL2	79778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1477990	1477990	+	Splice_Site	SNP	C	C	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	1477990	C	G	1477990	5	3	274	1	0	0	0	0	0	0	1	0	9581	695	24	4	620	4	MICALL2	7	1477990	Splice_Site	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		1477990	157660673	30	17784											
CBLL1	79872	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107398636	107398636	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	107398636	C	T	107398636	2	4	274	1	0	0	0	0	0	0	0	1	2705	900	32	2		2	CBLL1	7	107398636	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	105920646	107398636	51740027	31	17785											
DNAJB9	4189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	108212287	108212287	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	108212287	G	A	108212287	2	1	274	1	0	0	0	0	0	0	0	1	4629	962	34	2		2	DNAJB9	7	108212287	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	813651	108212287	50926376	32	17786											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151859497	151859497	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	151859497	T	-	151859497	7	5	274	1	0	1	0	1	0	0	0	0	9629	1609	56	0	3638	0	MLL3	7	151859497	Frame_Shift_Del	DEL	T	TCGA-B9-A5W8-01A-11D-A28G-10	43647210	151859497	7279166	33	17787											
DLGAP2	9228	broad.mit.edu	37	8	1497770	1497770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	1497770	G	A	1497770	3	1	274	1	0	0	0	0	1	0	0	0	4562	1087	38	1	913	1	DLGAP2	8	1497770	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		1497770	144866252	34	17788											
NEFM	4741	broad.mit.edu	37	8	24771576	24771576	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	24771576	C	T	24771576	2	4	274	1	0	0	0	0	0	0	0	1	10323	639	23	1		1	NEFM	8	24771576	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	23273806	24771576	121592446	35	17789											
FAM83H	286077	hgsc.bcm.edu	37	8	144809730	144809730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	144809730	G	C	144809730	3	2	274	1	0	0	0	0	1	0	0	0	5647	1319	46	4	1642	4	FAM83H	8	144809730	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	120038154	144809730	1554292	36	17790											
PLEC	5339	hgsc.bcm.edu	37	8	145001217	145001217	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	145001217	C	T	145001217	2	4	274	1	0	0	0	0	0	0	0	1	12059	755	27	1		1	PLEC	8	145001217	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	191487	145001217	1362805	37	17791											
CDKN2A	1029	hgsc.bcm.edu	37	9	21971184	21971184	+	Missense_Mutation	SNP	T	T	G	rs201208890		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	21971184	T	G	21971184	3	3	274	1	0	0	0	0	1	0	0	0	3163	1551	54	5	304	5	CDKN2A	9	21971184	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10		21971184	119242247	38	17792											
HRCT1	646962	broad.mit.edu	37	9	35906600	35906601	+	Frame_Shift_Ins	INS	-	-	A	rs79156963	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	35906601	-	A	35906600	7	5	274	1	0	1	1	0	0	0	0	0	7360	623	22	0	318	0	HRCT1	9	35906600	Frame_Shift_Ins	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	13935416	35906600	105306831	39	17793	233	2									
HRCT1	646962	broad.mit.edu	37	9	35906601	35906602	+	Frame_Shift_Ins	INS	-	-	CA	rs143611048	by1000genomes;alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	CA	35906602	-	CA	35906601	7	5	274	1	0	1	1	0	0	0	0	0	7360	623	22	0	319	0	HRCT1	9	35906601	Frame_Shift_Ins	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	1	35906601	105306830	40	17794	233	2									
PIP5K1B	8395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	71509346	71509346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	71509346	T	C	71509346	3	2	274	1	0	0	0	0	1	0	0	0	11947	1464	51	3	581	3	PIP5K1B	9	71509346	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	35602745	71509346	69704085	41	17795											
TLR4	7099	broad.mit.edu	37	9	120475890	120475890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	120475890	T	C	120475890	3	2	274	1	0	0	0	0	1	0	0	0	15965	1580	55	3	1494	3	TLR4	9	120475890	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	48966544	120475890	20737541	42	17796											
SORCS1	114815	ucsc.edu;bcgsc.ca	37	10	108371705	108371705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	108371705	C	A	108371705	3	1	274	1	0	0	0	0	1	0	0	0	14943	622	22	4	763	4	SORCS1	10	108371705	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		108371705	27163042	43	17797											
C10orf118	55088	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115917414	115917414	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	115917414	G	A	115917414	4	1	274	1	0	0	0	0	0	1	0	0	1589	1299	45	2	2094	2	C10orf118	10	115917414	Nonsense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	7545709	115917414	19617333	44	17798											
EPS8L2	64787	broad.mit.edu	37	11	726471	726471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	726471	G	T	726471	3	4	274	1	0	0	0	0	1	0	0	0	5198	1203	42	4	1991	4	EPS8L2	11	726471	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		726471	134280045	45	17799											
GLYATL2	219970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58601915	58601915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	58601915	T	C	58601915	3	2	274	1	0	0	0	0	1	0	0	0	6488	1609	56	3	16	3	GLYATL2	11	58601915	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	57875444	58601915	76404601	46	17800											
PCF11	51585	broad.mit.edu	37	11	82879804	82879804	+	Silent	SNP	A	A	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	82879804	A	T	82879804	2	4	274	1	0	0	0	0	0	0	0	1	11580	146	6	5		5	PCF11	11	82879804	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	24277889	82879804	52126712	47	17801											
MAML2	84441	broad.mit.edu;bcgsc.ca	37	11	95825356	95825356	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	95825356	T	C	95825356	2	2	274	1	0	0	0	0	0	0	0	1	9213	1722	60	3		3	MAML2	11	95825356	Silent	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	12945552	95825356	39181160	48	17802											
MAML2	84441	broad.mit.edu	37	11	95825392	95825392	+	Frame_Shift_Del	DEL	C	C	-	rs149006316	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	95825392	C	-	95825392	7	5	274	1	0	1	0	1	0	0	0	0	9213	796	28	0	1683	0	MAML2	11	95825392	Frame_Shift_Del	DEL	C	TCGA-B9-A5W8-01A-11D-A28G-10	36	95825392	39181124	49	17803	234	3									
MAML2	84441	broad.mit.edu	37	11	95825394	95825395	+	Frame_Shift_Del	DEL	GC	GC	-	rs149006316	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	95825395	GC	-	95825394	7	5	274	1	0	1	0	1	0	0	0	0	9213	1328	46	0	1685	0	MAML2	11	95825394	Frame_Shift_Del	DEL	GC	TCGA-B9-A5W8-01A-11D-A28G-10	2	95825394	39181122	50	17804	234	3									
MAML2	84441	hgsc.bcm.edu;bcgsc.ca	37	11	95825395	95825395	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	95825395	C	T	95825395	2	4	274	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825395	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	1	95825395	39181121	51	17805	234	3									
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7526000	7526001	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	TT	7526001	GC	TT	7526000	3	4	274	1	0	0	0	0	1	0	0	0	2970	1319	46	4	739	4	CD163L1	12	7526000	Missense_Mutation	DNP	GC	TCGA-B9-A5W8-01A-11D-A28G-10		7526000	126325895	52	17806											
SLC38A4	55089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	47170779	47170779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	47170779	C	T	47170779	3	4	274	1	0	0	0	0	1	0	0	0	14619	652	23	1	581	1	SLC38A4	12	47170779	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	39644779	47170779	86681116	53	17807											
METTL7A	25840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	51319010	51319030	+	In_Frame_Del	DEL	GGAGTTTGCGGGCCCCTCCGG	GGAGTTTGCGGGCCCCTCCGG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GGAGTTTGCGGGCCCCTCCGG	GGAGTTTGCGGGCCCCTCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	51319030	GGAGTTTGCGGGCCCCTCCGG	-	51319010	7	5	274	1	0	1	0	1	0	0	0	0	9512	991	35	0	191	0	METTL7A	12	51319010	In_Frame_Del	DEL	GGAGTTTGCGGGCCCCTCCGG	TCGA-B9-A5W8-01A-11D-A28G-10	4148231	51319010	82532885	54	17808											
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64808728	64808728	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	64808728	C	A	64808728	2	1	274	1	0	0	0	0	0	0	0	1	17462	668	24	4		4	XPOT	12	64808728	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	13489718	64808728	69043167	55	17809											
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	94975986	94975987	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	94975987	-	A	94975986	7	5	274	1	0	1	1	0	0	0	0	0	16006	1406	49	0	1038	0	TMCC3	12	94975986	Frame_Shift_Ins	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	30167258	94975986	38875909	56	17810											
METAP2	10988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	95907438	95907438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	95907438	A	G	95907438	3	3	274	1	0	0	0	0	1	0	0	0	9494	43	2	3	1237	3	METAP2	12	95907438	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	931452	95907438	37944457	57	17811											
RFC5	5985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	118462664	118462664	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	118462664	A	-	118462664	7	5	274	1	0	1	0	1	0	0	0	0	13261	247	9	0	458	0	RFC5	12	118462664	Frame_Shift_Del	DEL	A	TCGA-B9-A5W8-01A-11D-A28G-10	22555226	118462664	15389231	58	17812											
PABPC3	5042	ucsc.edu	37	13	25672007	25672007	+	Silent	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	25672007	A	G	25672007	2	3	274	1	0	0	0	0	0	0	0	1	11372	417	15	3		3	PABPC3	13	25672007	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10		25672007	89497871	59	17813											
FRY	10129	broad.mit.edu	37	13	32841388	32841388	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	32841388	C	A	32841388	2	1	274	1	0	0	0	0	0	0	0	1	6070	668	24	4		4	FRY	13	32841388	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	7169381	32841388	82328490	60	17814											
LRRC16B	90668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24528535	24528547	+	Frame_Shift_Del	DEL	CATCAATGCCCTG	CATCAATGCCCTG	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	CATCAATGCCCTG	CATCAATGCCCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	24528547	CATCAATGCCCTG	-	24528535	7	5	274	1	0	1	0	1	0	0	0	0	8979	813	29	0	1765	0	LRRC16B	14	24528535	Frame_Shift_Del	DEL	CATCAATGCCCTG	TCGA-B9-A5W8-01A-11D-A28G-10		24528535	82821005	61	17815											
RALGAPA1	253959	ucsc.edu;bcgsc.ca	37	14	36103887	36103887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	36103887	G	A	36103887	3	1	274	1	0	0	0	0	1	0	0	0	13026	1319	46	2	1929	2	RALGAPA1	14	36103887	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	11575352	36103887	71245653	62	17816											
SPTBN5	51332	ucsc.edu	37	15	42147764	42147764	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	42147764	G	A	42147764	2	1	274	1	0	0	0	0	0	0	0	1	15134	1310	46	2		2	SPTBN5	15	42147764	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		42147764	60383628	63	17817											
DAPK2	23604	broad.mit.edu;bcgsc.ca	37	15	64217047	64217047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	64217047	T	C	64217047	3	2	274	1	0	0	0	0	1	0	0	0	4238	1493	52	3	302	3	DAPK2	15	64217047	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	22069283	64217047	38314345	64	17818											
KBTBD13	390594	hgsc.bcm.edu	37	15	65369367	65369367	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	65369367	C	T	65369367	2	4	274	1	0	0	0	0	0	0	0	1	7999	796	28	2		2	KBTBD13	15	65369367	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	1152320	65369367	37162025	65	17819											
FBXO22	26263	broad.mit.edu	37	15	76225142	76225142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	76225142	C	A	76225142	3	1	274	1	0	0	0	0	1	0	0	0	5741	797	28	4	974	4	FBXO22	15	76225142	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	10855775	76225142	26306250	66	17820											
CDR2	1039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	22358803	22358803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	22358803	A	G	22358803	3	3	274	1	0	0	0	0	1	0	0	0	3174	246	9	3	520	3	CDR2	16	22358803	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10		22358803	67995950	67	17821											
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30794425	30794425	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	30794425	G	A	30794425	2	1	274	1	0	0	0	0	0	0	0	1	18065	1306	46	2		2	ZNF629	16	30794425	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	8435622	30794425	59560328	68	17822											
ZNF646	9726	broad.mit.edu	37	16	31087650	31087650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	31087650	A	G	31087650	3	3	274	1	0	0	0	0	1	0	0	0	18074	304	11	3	7	3	ZNF646	16	31087650	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	293225	31087650	59267103	69	17823											
MMP15	4324	broad.mit.edu	37	16	58074478	58074478	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	58074478	C	A	58074478	2	1	274	1	0	0	0	0	0	0	0	1	9661	726	26	4		4	MMP15	16	58074478	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	26986828	58074478	32280275	70	17824											
NFAT5	10725	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69727578	69727578	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	69727578	C	T	69727578	4	4	274	1	0	0	0	0	0	1	0	0	10367	479	17	2	3900	2	NFAT5	16	69727578	Nonsense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	11653100	69727578	20627175	71	17825											
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	83994295	83994295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	83994295	G	A	83994295	4	1	274	1	0	0	0	0	0	1	0	0	11296	1357	47	2	593	2	OSGIN1	16	83994295	Nonsense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	14266717	83994295	6360458	72	17826											
MTHFSD	64779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	86565821	86565821	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	86565821	G	A	86565821	2	1	274	1	0	0	0	0	0	0	0	1	9940	1136	40	1		1	MTHFSD	16	86565821	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	2571526	86565821	3788932	73	17827											
MYH10	4628	ucsc.edu;bcgsc.ca	37	17	8424548	8424548	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	8424548	G	A	8424548	2	1	274	1	0	0	0	0	0	0	0	1	10037	958	34	2		2	MYH10	17	8424548	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		8424548	72770662	74	17828											
GIT1	28964	bcgsc.ca	37	17	27902918	27902918	+	Splice_Site	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	27902918	T	C	27902918	5	2	274	1	0	0	0	0	0	0	1	0	6403	1594	55	3	641	3	GIT1	17	27902918	Splice_Site	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	19478370	27902918	53292292	75	17829											
ACLY	47	ucsc.edu	37	17	40028342	40028342	+	Silent	SNP	A	A	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	40028342	A	T	40028342	2	4	274	1	0	0	0	0	0	0	0	1	143	10	1	5		5	ACLY	17	40028342	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	12125424	40028342	41166868	76	17830											
ACSF2	80221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48541577	48541577	+	Splice_Site	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	48541577	A	G	48541577	5	3	274	1	0	0	0	0	0	0	1	0	175	202	7	3	1175	3	ACSF2	17	48541577	Splice_Site	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	8513235	48541577	32653633	77	17831											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11134286	11134286	+	Silent	SNP	C	C	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	11134286	C	G	11134286	2	3	274	1	0	0	0	0	0	0	0	1	14783	871	31	4		4	SMARCA4	19	11134286	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		11134286	47994697	78	17832											
NCCRP1	342897	hgsc.bcm.edu	37	19	39687743	39687743	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	39687743	C	T	39687743	2	4	274	1	0	0	0	0	0	0	0	1	10220	564	20	2		2	NCCRP1	19	39687743	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	28553457	39687743	19441240	79	17833											
ZNF225	7768	broad.mit.edu	37	19	44636876	44636878	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	44636878	AAA	-	44636876	7	5	274	1	0	1	0	1	0	0	0	0	17791	359	13	0	2123	0	ZNF225	19	44636876	In_Frame_Del	DEL	AAA	TCGA-B9-A5W8-01A-11D-A28G-10	4949133	44636876	14492107	80	17834	235	2									
ZNF225	7768	broad.mit.edu;bcgsc.ca	37	19	44636880	44636885	+	In_Frame_Del	DEL	GACACA	GACACA	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GACACA	GACACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	44636885	GACACA	-	44636880	7	5	274	1	0	1	0	1	0	0	0	0	17791	1290	45	0	2127	0	ZNF225	19	44636880	In_Frame_Del	DEL	GACACA	TCGA-B9-A5W8-01A-11D-A28G-10	4	44636880	14492103	81	17835	235	2									
DHX34	9704	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47856826	47856826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	47856826	T	C	47856826	3	2	274	1	0	0	0	0	1	0	0	0	4509	1696	59	3	541	3	DHX34	19	47856826	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	3219946	47856826	11272157	82	17836											
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55143956	55143956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	55143956	A	G	55143956	3	3	274	1	0	0	0	0	1	0	0	0	8797	449	16	3	721	3	LILRB1	19	55143956	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	7287130	55143956	3985027	83	17837											
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42984469	42984469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	42984469	G	T	42984469	3	4	274	1	0	0	0	0	1	0	0	0	7260	1116	39	4	27	4	HNF4A	20	42984469	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		42984469	20041051	84	17838											
GGT5	2687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24628898	24628898	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	C	24628898	G	C	24628898	3	2	274	1	0	0	0	0	1	0	0	0	6369	1165	41	4	1310	4	GGT5	22	24628898	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		24628898	26675668	85	17839											
NEFH	4744	hgsc.bcm.edu	37	22	29885571	29885572	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	CCCCTGAGAAGGCCAAGT	29885572	-	CCCCTGAGAAGGCCAAGT	29885571	7	5	274	1	0	1	1	0	0	0	0	0	10321	1667	58	0	1956	0	NEFH	22	29885571	In_Frame_Ins	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	5256673	29885571	21418995	86	17840											
CSNK1E	1454	broad.mit.edu	37	22	38699223	38699223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	38699223	G	A	38699223	3	1	274	1	0	0	0	0	1	0	0	0	3955	1203	42	2	1175	2	CSNK1E	22	38699223	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	8813652	38699223	12605343	87	17841											
TCEANC	170082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	13680806	13680808	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	-	13680808	CCT	-	13680806	7	5	274	1	0	1	0	1	0	0	0	0	15690	623	22	0	275	0	TCEANC	23	13680806	In_Frame_Del	DEL	CCT	TCGA-B9-A5W8-01A-11D-A28G-10		13680806	141589754	88	17842											
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	19560042	19560043	+	Splice_Site	INS	-	-	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	19560043	-	T	19560042	8	5	274	1	0	1	1	0	0	0	1	0	14268	579	20	0	116	0	SH3KBP1	23	19560042	Splice_Site	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	5879236	19560042	135710518	89	17843	236	2									
SH3KBP1	30011	hgsc.bcm.edu;bcgsc.ca	37	X	19560045	19560045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	19560045	C	A	19560045	3	1	274	1	0	0	0	0	1	0	0	0	14268	912	32	4	119	4	SH3KBP1	23	19560045	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	3	19560045	135710515	90	17844	236	2									
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70618524	70618524	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	A	70618524	G	A	70618524	2	1	274	1	0	0	0	0	0	0	0	1	15525	991	35	2		2	TAF1	23	70618524	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	51058479	70618524	84652036	91	17845											
ARMCX5	64860	broad.mit.edu;bcgsc.ca	37	X	101857944	101857944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	T	101857944	G	T	101857944	3	4	274	1	0	0	0	0	1	0	0	0	962	1232	43	4	877	4	ARMCX5	23	101857944	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	31239420	101857944	53412616	92	17846											
GLUD2	2747	ucsc.edu	37	X	120183026	120183026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	G	120183026	T	G	120183026	3	3	274	1	0	0	0	0	1	0	0	0	6484	1635	57	5	1490	5	GLUD2	23	120183026	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	18325082	120183026	35087534	93	17847											
HTR6	3362	broad.mit.edu	37	1	20005583	20005583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	20005583	G	T	20005583	3	4	275	1	0	0	0	0	1	0	0	0	7458	1203	42	4	1055	4	HTR6	1	20005583	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		20005583	229245038	1	17848											
CATSPER4	378807	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26524220	26524220	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	26524220	T	A	26524220	3	1	275	1	0	0	0	0	1	0	0	0	2692	1551	54	5	517	5	CATSPER4	1	26524220	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	6518637	26524220	222726401	2	17849											
RLF	6018	broad.mit.edu;bcgsc.ca	37	1	40702398	40702398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	40702398	G	A	40702398	3	1	275	1	0	0	0	0	1	0	0	0	13402	1261	44	2	2054	2	RLF	1	40702398	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	14178178	40702398	208548223	3	17850											
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	91742587	91742587	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	91742587	C	G	91742587	3	3	275	1	0	0	0	0	1	0	0	0	7090	922	32	4	919	4	HFM1	1	91742587	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	51040189	91742587	157508034	4	17851											
SLC44A3	126969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	95330398	95330398	+	Silent	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	95330398	T	A	95330398	2	1	275	1	0	0	0	0	0	0	0	1	14650	1567	55	5		5	SLC44A3	1	95330398	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	3587811	95330398	153920223	5	17852											
CHD1L	9557	ucsc.edu;bcgsc.ca	37	1	146765335	146765335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	146765335	T	C	146765335	3	2	275	1	0	0	0	0	1	0	0	0	3326	1580	55	3	2517	3	CHD1L	1	146765335	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	51434937	146765335	102485286	6	17853											
RGL1	23179	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183885769	183885769	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	183885769	T	G	183885769	3	3	275	1	0	0	0	0	1	0	0	0	13289	1461	51	5	2105	5	RGL1	1	183885769	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	37120434	183885769	65364852	7	17854											
KLHDC8A	55220	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205308913	205308913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	205308913	C	T	205308913	3	4	275	1	0	0	0	0	1	0	0	0	8369	652	23	1	668	1	KLHDC8A	1	205308913	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	21423144	205308913	43941708	8	17855											
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	39088916	39088916	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	39088916	T	C	39088916	2	2	275	1	0	0	0	0	0	0	0	1	4515	1451	51	3		3	DHX57	2	39088916	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		39088916	204110457	9	17856											
PDE11A	50940	broad.mit.edu	37	2	178936708	178936708	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	178936708	G	A	178936708	4	1	275	1	0	0	0	0	0	1	0	0	11638	1153	40	1	2424	1	PDE11A	2	178936708	Nonsense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	139847792	178936708	64262665	10	17857											
NBEAL1	65065	hgsc.bcm.edu;bcgsc.ca	37	2	204009565	204009566	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	204009566	-	T	204009565	7	5	275	1	0	1	1	0	0	0	0	0	10195	204	8	0	5122	0	NBEAL1	2	204009565	Frame_Shift_Ins	INS	-	TCGA-B9-A5W9-01A-11D-A28G-10	25072857	204009565	39189808	11	17858											
STK11IP	114790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220473931	220473931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	220473931	T	C	220473931	3	2	275	1	0	0	0	0	1	0	0	0	15300	1667	58	3	2017	3	STK11IP	2	220473931	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	16464366	220473931	22725442	12	17859											
INPP5D	3635	broad.mit.edu	37	2	234102516	234102516	+	Silent	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	234102516	G	T	234102516	2	4	275	1	0	0	0	0	0	0	0	1	7763	1074	38	4		4	INPP5D	2	234102516	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	13628585	234102516	9096857	13	17860											
XIRP1	165904	broad.mit.edu	37	3	39229085	39229085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	39229085	T	A	39229085	3	1	275	1	0	0	0	0	1	0	0	0	17441	1696	59	5	3683	5	XIRP1	3	39229085	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		39229085	158793345	14	17861											
DOCK3	1795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	51393580	51393580	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	-	51393580	G	-	51393580	7	5	275	1	0	1	0	1	0	0	0	0	4690	1000	35	0	4476	0	DOCK3	3	51393580	Frame_Shift_Del	DEL	G	TCGA-B9-A5W9-01A-11D-A28G-10	12164495	51393580	146628850	15	17862											
DNAH1	25981	hgsc.bcm.edu;bcgsc.ca	37	3	52402933	52402934	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	52402934	-	G	52402933	7	5	275	1	0	1	1	0	0	0	0	0	4599	318	11	0	6084	0	DNAH1	3	52402933	Frame_Shift_Ins	INS	-	TCGA-B9-A5W9-01A-11D-A28G-10	1009353	52402933	145619497	16	17863											
ATXN7	6314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	63983337	63983337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	63983337	C	T	63983337	3	4	275	1	0	0	0	0	1	0	0	0	1215	478	17	2	2812	2	ATXN7	3	63983337	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	11580404	63983337	134039093	17	17864											
ITGB5	3693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124515325	124515325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	124515325	A	T	124515325	3	4	275	1	0	0	0	0	1	0	0	0	7905	188	7	5	820	5	ITGB5	3	124515325	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	60531988	124515325	73507105	18	17865											
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	133331389	133331389	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	133331389	C	T	133331389	2	4	275	1	0	0	0	0	0	0	0	1	16381	593	21	2		2	TOPBP1	3	133331389	Silent	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	8816064	133331389	64691041	19	17866											
KLHL6	89857	broad.mit.edu	37	3	183217515	183217515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	183217515	A	C	183217515	3	2	275	1	0	0	0	0	1	0	0	0	8400	159	6	5	871	5	KLHL6	3	183217515	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	49886126	183217515	14804915	20	17867											
CLDN16	10686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	190126252	190126252	+	Missense_Mutation	SNP	T	T	G	rs143316426	byfrequency;alternate_allele	TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	190126252	T	G	190126252	3	3	275	1	0	0	0	0	1	0	0	0	3479	1838	64	5	756	5	CLDN16	3	190126252	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	6908737	190126252	7896178	21	17868											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	128813596	128813596	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	128813596	T	C	128813596	2	2	275	1	0	0	0	0	0	0	0	1	12105	1500	52	3		3	PLK4	4	128813596	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		128813596	62340680	22	17869											
CPE	1363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	166300624	166300624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	166300624	A	C	166300624	3	2	275	1	0	0	0	0	1	0	0	0	3801	304	11	5	253	5	CPE	4	166300624	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	37487028	166300624	24853652	23	17870											
SHROOM1	134549	broad.mit.edu	37	5	132160935	132160935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	132160935	G	T	132160935	3	4	275	1	0	0	0	0	1	0	0	0	14306	1203	42	4	1688	4	SHROOM1	5	132160935	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		132160935	48754325	24	17871											
FAM13B	51306	broad.mit.edu	37	5	137289150	137289150	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	137289150	G	A	137289150	4	1	275	1	0	0	0	0	0	1	0	0	5457	1066	37	1	1126	1	FAM13B	5	137289150	Nonsense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	5128215	137289150	43626110	25	17872											
HIGD2A	192286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	175816407	175816407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	175816407	T	A	175816407	3	1	275	1	0	0	0	0	1	0	0	0	7116	1551	54	5	236	5	HIGD2A	5	175816407	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	38527257	175816407	5098853	26	17873											
UNC5A	90249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176300996	176300996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	176300996	T	G	176300996	3	3	275	1	0	0	0	0	1	0	0	0	17003	1551	54	5	940	5	UNC5A	5	176300996	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	484589	176300996	4614264	27	17874											
TNFRSF21	27242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	47254097	47254097	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	47254097	G	A	47254097	4	1	275	1	0	0	0	0	0	1	0	0	16307	1299	45	2	1656	2	TNFRSF21	6	47254097	Nonsense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		47254097	123860970	28	17875											
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	138656258	138656258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	138656258	G	A	138656258	3	1	275	1	0	0	0	0	1	0	0	0	8224	1000	35	2	6405	2	KIAA1244	6	138656258	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	91402161	138656258	32458809	29	17876											
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	36446013	36446013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	36446013	A	C	36446013	3	2	275	1	0	0	0	0	1	0	0	0	694	98	4	5	725	5	ANLN	7	36446013	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10		36446013	122692650	30	17877											
ASH2L	9070	broad.mit.edu	37	8	37978552	37978552	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	37978552	G	A	37978552	2	1	275	1	0	0	0	0	0	0	0	1	1042	1074	38	1		1	ASH2L	8	37978552	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		37978552	108385470	31	17878											
RECQL4	9401	broad.mit.edu	37	8	145738764	145738764	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	-	145738764	A	-	145738764	7	5	275	1	0	1	0	1	0	0	0	0	13215	146	6	0	1358	0	RECQL4	8	145738764	Frame_Shift_Del	DEL	A	TCGA-B9-A5W9-01A-11D-A28G-10	107760212	145738764	625258	32	17879											
CERCAM	51148	broad.mit.edu	37	9	131186698	131186698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	131186698	C	T	131186698	3	4	275	1	0	0	0	0	1	0	0	0	3268	652	23	1	589	1	CERCAM	9	131186698	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10		131186698	10026733	33	17880											
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71128300	71128300	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	71128300	G	A	71128300	2	1	275	1	0	0	0	0	0	0	0	1	7197	1277	45	2		2	HK1	10	71128300	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		71128300	64406447	34	17881											
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	119003520	119003520	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	119003520	G	T	119003520	4	4	275	1	0	0	0	0	0	1	0	0	14439	1291	45	4	166	4	SLC18A2	10	119003520	Nonsense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	47875220	119003520	16531227	35	17882											
CCDC85B	11007	hgsc.bcm.edu	37	11	65658488	65658488	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	65658488	C	T	65658488	2	4	275	1	0	0	0	0	0	0	0	1	2862	755	27	1		1	CCDC85B	11	65658488	Silent	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10		65658488	69348028	36	17883											
SDHD	6392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111958619	111958619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	111958619	A	G	111958619	3	3	275	1	0	0	0	0	1	0	0	0	13980	449	16	3	97	3	SDHD	11	111958619	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	46300131	111958619	23047897	37	17884											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49432161	49432161	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	49432161	A	C	49432161	3	2	275	1	0	0	0	0	1	0	0	0	9628	188	7	5	7719	5	MLL2	12	49432161	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10		49432161	84419734	38	17885											
RHEBL1	121268	broad.mit.edu;bcgsc.ca	37	12	49460045	49460045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	49460045	C	A	49460045	3	1	275	1	0	0	0	0	1	0	0	0	13342	565	20	4	214	4	RHEBL1	12	49460045	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	27884	49460045	84391850	39	17886											
RAB5B	5869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56384574	56384574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	56384574	A	G	56384574	3	3	275	1	0	0	0	0	1	0	0	0	12962	449	16	3	434	3	RAB5B	12	56384574	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	6924529	56384574	77467321	40	17887											
SLC17A8	246213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100811853	100811853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	100811853	T	G	100811853	3	3	275	1	0	0	0	0	1	0	0	0	14436	1771	62	5	1386	5	SLC17A8	12	100811853	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	44427279	100811853	33040042	41	17888											
ACACB	32	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109702126	109702126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	109702126	G	A	109702126	3	1	275	1	0	0	0	0	1	0	0	0	107	1261	44	2	7071	2	ACACB	12	109702126	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	8890273	109702126	24149769	42	17889											
PEBP1	5037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118575948	118575948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	118575948	A	C	118575948	3	2	275	1	0	0	0	0	1	0	0	0	11720	98	4	5	246	5	PEBP1	12	118575948	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	8873822	118575948	15275947	43	17890											
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121881832	121881833	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	AA	121881833	GC	AA	121881832	3	1	275	1	0	0	0	0	1	0	0	0	8132	962	34	2	1660	2	KDM2B	12	121881832	Missense_Mutation	DNP	GC	TCGA-B9-A5W9-01A-11D-A28G-10	3305884	121881832	11970063	44	17891											
RXFP2	122042	bcgsc.ca	37	13	32360573	32360573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	32360573	T	C	32360573	3	2	275	1	0	0	0	0	1	0	0	0	13773	1821	63	3	1029	3	RXFP2	13	32360573	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		32360573	82809305	45	17892											
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	77714983	77714983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	77714983	T	C	77714983	3	2	275	1	0	0	0	0	1	0	0	0	10025	1763	61	3	6773	3	MYCBP2	13	77714983	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	45354410	77714983	37454895	46	17893											
TM9SF1	10548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24661497	24661519	+	Frame_Shift_Del	DEL	CTGCTGAGTTAATGGCCCCATGA	CTGCTGAGTTAATGGCCCCATGA	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	CTGCTGAGTTAATGGCCCCATGA	CTGCTGAGTTAATGGCCCCATGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	-	24661519	CTGCTGAGTTAATGGCCCCATGA	-	24661497	7	5	275	1	0	1	0	1	0	0	0	0	15989	797	28	0	842	0	TM9SF1	14	24661497	Frame_Shift_Del	DEL	CTGCTGAGTTAATGGCCCCATGA	TCGA-B9-A5W9-01A-11D-A28G-10		24661497	82688043	47	17894											
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65253201	65253201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	65253201	C	T	65253201	3	4	275	1	0	0	0	0	1	0	0	0	15130	797	28	2	3657	2	SPTB	14	65253201	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	40591704	65253201	42096339	48	17895											
HERC2	8924	bcgsc.ca	37	15	28456185	28456185	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	-	28456185	A	-	28456185	7	5	275	1	0	1	0	1	0	0	0	0	7065	291	11	0	7672	0	HERC2	15	28456185	Frame_Shift_Del	DEL	A	TCGA-B9-A5W9-01A-11D-A28G-10		28456185	74075207	49	17896											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42166194	42166194	+	Missense_Mutation	SNP	A	A	C	rs199969875	alternate_allele	TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	42166194	A	C	42166194	3	2	275	1	0	0	0	0	1	0	0	0	15134	188	7	5	6461	5	SPTBN5	15	42166194	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	13710009	42166194	60365198	50	17897											
TGM7	116179	broad.mit.edu	37	15	43571977	43571977	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	43571977	C	A	43571977	2	1	275	1	0	0	0	0	0	0	0	1	15847	697	25	4		4	TGM7	15	43571977	Silent	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	1405783	43571977	58959415	51	17898											
VPS13C	54832	broad.mit.edu	37	15	62207846	62207846	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	62207846	A	T	62207846	3	4	275	1	0	0	0	0	1	0	0	0	17203	14	1	5	2958	5	VPS13C	15	62207846	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	18635869	62207846	40323546	52	17899											
SMAD6	4091	hgsc.bcm.edu	37	15	66995735	66995735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	66995735	C	T	66995735	3	4	275	1	0	0	0	0	1	0	0	0	14775	623	22	2	141	2	SMAD6	15	66995735	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	4787889	66995735	35535657	53	17900											
ISLR	3671	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74468065	74468065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	74468065	G	T	74468065	3	4	275	1	0	0	0	0	1	0	0	0	7865	1232	43	4	868	4	ISLR	15	74468065	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	7472330	74468065	28063327	54	17901											
ADAMTS7	11173	broad.mit.edu	37	15	79083052	79083052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	79083052	C	T	79083052	3	4	275	1	0	0	0	0	1	0	0	0	271	710	25	2	4148	2	ADAMTS7	15	79083052	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	4614987	79083052	23448340	55	17902											
VASN	114990	broad.mit.edu	37	16	4432543	4432543	+	Silent	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	4432543	A	C	4432543	2	2	275	1	0	0	0	0	0	0	0	1	17139	146	6	5		5	VASN	16	4432543	Silent	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10		4432543	85922210	56	17903											
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57713092	57713092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	57713092	C	T	57713092	3	4	275	1	0	0	0	0	1	0	0	0	6727	623	22	2	514	2	GPR97	16	57713092	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	53280549	57713092	32641661	57	17904											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72821093	72821093	+	Silent	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	72821093	G	T	72821093	2	4	275	1	0	0	0	0	0	0	0	1	17646	1335	47	4		4	ZFHX3	16	72821093	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	15108001	72821093	17533660	58	17905											
CLEC18B	497190	broad.mit.edu;bcgsc.ca	37	16	74444869	74444869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	74444869	G	T	74444869	3	4	275	1	0	0	0	0	1	0	0	0	3505	933	33	4	339	4	CLEC18B	16	74444869	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	1623776	74444869	15909884	59	17906											
GALNS	2588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88889080	88889080	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	88889080	G	A	88889080	2	1	275	1	0	0	0	0	0	0	0	1	6213	1277	45	2		2	GALNS	16	88889080	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	14444211	88889080	1465673	60	17907											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18058522	18058522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	18058522	C	T	18058522	3	4	275	1	0	0	0	0	1	0	0	0	10070	652	23	1	8497	1	MYO15A	17	18058522	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10		18058522	63136688	61	17908											
AATF	26574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35345926	35345926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	35345926	G	A	35345926	3	1	275	1	0	0	0	0	1	0	0	0	25	1348	47	2	1078	2	AATF	17	35345926	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	17287404	35345926	45849284	62	17909											
SCPEP1	59342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	55058480	55058480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	55058480	A	C	55058480	3	2	275	1	0	0	0	0	1	0	0	0	13948	69	3	5	120	5	SCPEP1	17	55058480	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	19712554	55058480	26136730	63	17910											
NACA2	342538	ucsc.edu	37	17	59668318	59668318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	59668318	C	T	59668318	3	4	275	1	0	0	0	0	1	0	0	0	10141	681	24	2	427	2	NACA2	17	59668318	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	4609838	59668318	21526892	64	17911											
SPHK1	8877	hgsc.bcm.edu	37	17	74381682	74381682	+	Missense_Mutation	SNP	C	C	T	rs56342542		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	74381682	C	T	74381682	3	4	275	1	0	0	0	0	1	0	0	0	15058	478	17	2	221	2	SPHK1	17	74381682	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	14713364	74381682	6813528	65	17912											
P4HB	5034	broad.mit.edu	37	17	79813349	79813349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	79813349	C	A	79813349	3	1	275	1	0	0	0	0	1	0	0	0	11366	739	26	4	1096	4	P4HB	17	79813349	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	5431667	79813349	1381861	66	17913											
DCC	1630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	50985743	50985743	+	Silent	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	50985743	T	A	50985743	2	1	275	1	0	0	0	0	0	0	0	1	4284	1538	54	5		5	DCC	18	50985743	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		50985743	27091505	67	17914											
SERPINB8	5271	broad.mit.edu	37	18	61654493	61654493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	61654493	G	T	61654493	3	4	275	1	0	0	0	0	1	0	0	0	14120	1203	42	4	1141	4	SERPINB8	18	61654493	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	10668750	61654493	16422755	68	17915											
DOHH	83475	broad.mit.edu	37	19	3496745	3496745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	3496745	G	T	3496745	3	4	275	1	0	0	0	0	1	0	0	0	4697	1203	42	4	856	4	DOHH	19	3496745	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		3496745	55632238	69	17916											
ZNF443	10224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12541862	12541862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	12541862	T	C	12541862	3	2	275	1	0	0	0	0	1	0	0	0	17928	1435	50	3	895	3	ZNF443	19	12541862	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	9045117	12541862	46587121	70	17917											
ZSWIM4	65249	broad.mit.edu	37	19	13928686	13928686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	T	13928686	A	T	13928686	3	4	275	1	0	0	0	0	1	0	0	0	18255	72	3	5	1499	5	ZSWIM4	19	13928686	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	1386824	13928686	45200297	71	17918											
PODNL1	79883	hgsc.bcm.edu	37	19	14044012	14044012	+	Silent	SNP	G	G	A	rs79400921		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	14044012	G	A	14044012	2	1	275	1	0	0	0	0	0	0	0	1	12186	962	34	2		2	PODNL1	19	14044012	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	115326	14044012	45084971	72	17919											
CYP4F3	4051	ucsc.edu;bcgsc.ca	37	19	15760902	15760902	+	Missense_Mutation	SNP	G	G	A	rs113330239		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	A	15760902	G	A	15760902	3	1	275	1	0	0	0	0	1	0	0	0	4192	1087	38	1	849	1	CYP4F3	19	15760902	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	1716890	15760902	43368081	73	17920											
CPAMD8	27151	broad.mit.edu	37	19	17086849	17086849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	17086849	T	C	17086849	3	2	275	1	0	0	0	0	1	0	0	0	3797	1638	57	3	3894	3	CPAMD8	19	17086849	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	1325947	17086849	42042134	74	17921											
LRRC25	126364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18507658	18507658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	18507658	C	G	18507658	3	3	275	1	0	0	0	0	1	0	0	0	8987	565	20	4	809	4	LRRC25	19	18507658	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	1420809	18507658	40621325	75	17922											
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19822257	19822257	+	Silent	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	19822257	T	G	19822257	2	3	275	1	0	0	0	0	0	0	0	1	17740	1538	54	5		5	ZNF14	19	19822257	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	1314599	19822257	39306726	76	17923											
LIN37	55957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36243734	36243734	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	-	36243734	G	-	36243734	7	5	275	1	0	1	0	1	0	0	0	0	8814	1014	35	0	205	0	LIN37	19	36243734	Frame_Shift_Del	DEL	G	TCGA-B9-A5W9-01A-11D-A28G-10	16421477	36243734	22885249	77	17924											
ZNF180	7733	bcgsc.ca	37	19	44981544	44981544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	C	44981544	T	C	44981544	3	2	275	1	0	0	0	0	1	0	0	0	17760	1783	62	3	928	3	ZNF180	19	44981544	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	8737810	44981544	14147439	78	17925											
ZNF835	90485	hgsc.bcm.edu	37	19	57175950	57175950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	57175950	A	G	57175950	3	3	275	1	0	0	0	0	1	0	0	0	18198	275	10	3	998	3	ZNF835	19	57175950	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	12194406	57175950	1953033	79	17926											
COL18A1	80781	broad.mit.edu	37	21	46911183	46911183	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	-	46911183	C	-	46911183	7	5	275	1	0	1	0	1	0	0	0	0	3677	726	26	0	3553	0	COL18A1	21	46911183	Frame_Shift_Del	DEL	C	TCGA-B9-A5W9-01A-11D-A28G-10		46911183	1218712	80	17927											
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118219440	118219440	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	G	118219440	T	G	118219440	3	3	275	1	0	0	0	0	1	0	0	0	8221	1609	56	5	387	5	KIAA1210	23	118219440	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		118219440	37051120	81	17928											
ALPL	249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21889674	21889674	+	Silent	SNP	C	C	A	rs201342272		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	21889674	C	A	21889674	2	1	276	1	0	0	0	0	0	0	0	1	547	581	21	4		4	ALPL	1	21889674	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		21889674	227360947	1	17929											
FAM46B	115572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27333078	27333078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	27333078	A	T	27333078	3	4	276	1	0	0	0	0	1	0	0	0	5573	14	1	5	646	5	FAM46B	1	27333078	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	5443404	27333078	221917543	2	17930											
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34643683	34643683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	34643683	G	C	34643683	3	2	276	1	0	0	0	0	1	0	0	0	2073	942	33	4	295	4	C1orf94	1	34643683	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	7310605	34643683	214606938	3	17931											
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52897102	52897102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	52897102	G	T	52897102	3	4	276	1	0	0	0	0	1	0	0	0	17592	1299	45	4	655	4	ZCCHC11	1	52897102	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	18253419	52897102	196353519	4	17932											
HS2ST1	9653	broad.mit.edu	37	1	87570377	87570377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	87570377	T	C	87570377	3	2	276	1	0	0	0	0	1	0	0	0	7369	1593	55	3	1099	3	HS2ST1	1	87570377	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	34673275	87570377	161680244	5	17933											
RUSC1	23623	broad.mit.edu	37	1	155292770	155292770	+	Silent	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	155292770	A	C	155292770	2	2	276	1	0	0	0	0	0	0	0	1	13763	146	6	5		5	RUSC1	1	155292770	Silent	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	67722393	155292770	93957851	6	17934											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158639217	158639217	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	158639217	G	-	158639217	7	5	276	1	0	1	0	1	0	0	0	0	15128	1319	46	0	5601	0	SPTA1	1	158639217	Frame_Shift_Del	DEL	G	TCGA-B9-A69E-01A-11D-A31X-10	3346447	158639217	90611404	7	17935											
RABIF	5877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202850297	202850297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	202850297	C	T	202850297	3	4	276	1	0	0	0	0	1	0	0	0	12982	826	29	2	194	2	RABIF	1	202850297	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	44211080	202850297	46400324	8	17936											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214826247	214826247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	214826247	T	C	214826247	3	2	276	1	0	0	0	0	1	0	0	0	3233	1406	49	3	8295	3	CENPF	1	214826247	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	11975950	214826247	34424374	9	17937											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228511117	228511117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	228511117	G	A	228511117	3	1	276	1	0	0	0	0	1	0	0	0	10819	1319	46	2	15680	2	OBSCN	1	228511117	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	13684870	228511117	20739504	10	17938											
OR2W3	343171	hgsc.bcm.edu	37	1	248059782	248059782	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	248059782	G	A	248059782	2	1	276	1	0	0	0	0	0	0	0	1	11040	991	35	2		2	OR2W3	1	248059782	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	19548665	248059782	1190839	11	17939											
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44116985	44116986	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	AG	44116986	GC	AG	44116985	3	1	276	1	0	0	0	0	1	0	0	0	8972	1319	46	2	176	2	LRPPRC	2	44116985	Missense_Mutation	DNP	GC	TCGA-B9-A69E-01A-11D-A31X-10		44116985	199082388	12	17940											
CYP27C1	339761	ucsc.edu	37	2	127950814	127950814	+	Silent	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	127950814	G	T	127950814	2	4	276	1	0	0	0	0	0	0	0	1	4162	1335	47	4		4	CYP27C1	2	127950814	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	83833829	127950814	115248559	13	17941											
CHRNA1	1134	broad.mit.edu;ucsc.edu	37	2	175614800	175614800	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	175614800	G	A	175614800	2	1	276	1	0	0	0	0	0	0	0	1	3383	987	35	2		2	CHRNA1	2	175614800	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	47663986	175614800	67584573	14	17942											
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	77671536	77671536	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	77671536	A	T	77671536	3	4	276	1	0	0	0	0	1	0	0	0	13527	275	10	5	3805	5	ROBO2	3	77671536	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		77671536	120350894	15	17943											
MRPL3	11222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	131190046	131190046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	131190046	G	T	131190046	3	4	276	1	0	0	0	0	1	0	0	0	9800	1261	44	4	355	4	MRPL3	3	131190046	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	53518510	131190046	66832384	16	17944											
AMOTL2	51421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134078995	134078995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	134078995	A	C	134078995	3	2	276	1	0	0	0	0	1	0	0	0	584	214	8	5	522	5	AMOTL2	3	134078995	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	2888949	134078995	63943435	17	17945											
SLC25A36	55186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	140675502	140675502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	140675502	G	A	140675502	3	1	276	1	0	0	0	0	1	0	0	0	14513	1029	36	2	181	2	SLC25A36	3	140675502	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	6596507	140675502	57346928	18	17946											
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151107816	151107816	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	151107816	T	G	151107816	3	3	276	1	0	0	0	0	1	0	0	0	9436	1435	50	5	5538	5	MED12L	3	151107816	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	10432314	151107816	46914614	19	17947											
SMC4	10051	hgsc.bcm.edu;bcgsc.ca	37	3	160134136	160134136	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	160134136	A	-	160134136	7	5	276	1	0	1	0	1	0	0	0	0	14798	246	9	0	1404	0	SMC4	3	160134136	Frame_Shift_Del	DEL	A	TCGA-B9-A69E-01A-11D-A31X-10	9026320	160134136	37888294	20	17948											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195516343	195516343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	195516343	C	A	195516343	3	1	276	1	0	0	0	0	1	0	0	0	9985	507	18	4		4	MUC4	3	195516343	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	35382207	195516343	2506087	21	17949											
DOK7	285489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	3478120	3478121	+	Frame_Shift_Ins	INS	-	-	GGCTA	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	GGCTA	3478121	-	GGCTA	3478120	7	5	276	1	0	1	1	0	0	0	0	0	4704	652	23	0	397	0	DOK7	4	3478120	Frame_Shift_Ins	INS	-	TCGA-B9-A69E-01A-11D-A31X-10		3478120	187676156	22	17950											
TLR10	81793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	38776735	38776735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	38776735	G	T	38776735	3	4	276	1	0	0	0	0	1	0	0	0	15962	1165	41	4	1962	4	TLR10	4	38776735	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	35298615	38776735	152377541	23	17951											
MUC7	4589	ucsc.edu;bcgsc.ca	37	4	71347168	71347168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	71347168	C	T	71347168	3	4	276	1	0	0	0	0	1	0	0	0	9988	797	28	2	713	2	MUC7	4	71347168	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	32570433	71347168	119807108	24	17952											
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119952865	119952865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	119952865	T	A	119952865	3	1	276	1	0	0	0	0	1	0	0	0	15469	1841	64	5	2949	5	SYNPO2	4	119952865	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	48605697	119952865	71201411	25	17953											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187517964	187517964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	187517964	C	G	187517964	3	3	276	1	0	0	0	0	1	0	0	0	5696	913	32	4	1048	4	FAT1	4	187517964	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	67565099	187517964	3636312	26	17954											
TRIP13	9319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	908120	908120	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	908120	C	T	908120	2	4	276	1	0	0	0	0	0	0	0	1	16569	581	21	2		2	TRIP13	5	908120	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		908120	180007140	27	17955											
SRD5A1	6715	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	6663046	6663047	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	6663047	-	T	6663046	7	5	276	1	0	1	1	0	0	0	0	0	15150	1377	48	0	694	0	SRD5A1	5	6663046	Frame_Shift_Ins	INS	-	TCGA-B9-A69E-01A-11D-A31X-10	5754926	6663046	174252214	28	17956											
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	21752166	21752166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	21752166	T	C	21752166	3	2	276	1	0	0	0	0	1	0	0	0	3100	1493	52	3	323	3	CDH12	5	21752166	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	15089120	21752166	159163094	29	17957											
IL31RA	133396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	55212822	55212822	+	Silent	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	55212822	T	C	55212822	2	2	276	1	0	0	0	0	0	0	0	1	7698	1654	58	3		3	IL31RA	5	55212822	Silent	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	33460656	55212822	125702438	30	17958											
KIF2A	3796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	61662304	61662304	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	61662304	A	T	61662304	3	4	276	1	0	0	0	0	1	0	0	0	8304	14	1	5	1704	5	KIF2A	5	61662304	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	6449482	61662304	119252956	31	17959											
SLC12A2	6558	broad.mit.edu	37	5	127420207	127420209	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	127420209	CGG	-	127420207	7	5	276	1	0	1	0	1	0	0	0	0	14396	639	23	0	563	0	SLC12A2	5	127420207	In_Frame_Del	DEL	CGG	TCGA-B9-A69E-01A-11D-A31X-10	65757903	127420207	53495053	32	17960											
NDST1	3340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149921206	149921206	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	149921206	C	T	149921206	2	4	276	1	0	0	0	0	0	0	0	1	10262	813	29	2		2	NDST1	5	149921206	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	22500999	149921206	30994054	33	17961											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56504731	56504731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	56504731	C	T	56504731	3	4	276	1	0	0	0	0	1	0	0	0	4785	565	20	2	19471	2	DST	6	56504731	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		56504731	114610336	34	17962											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	72960096	72960096	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	72960096	C	G	72960096	3	3	276	1	0	0	0	0	1	0	0	0	13380	912	32	4	2518	4	RIMS1	6	72960096	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	16455365	72960096	98154971	35	17963											
AKD1	221264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	109977966	109977966	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	109977966	G	-	109977966	7	5	276	1	0	1	0	1	0	0	0	0	460	1029	36	0	5131	0	AKD1	6	109977966	Frame_Shift_Del	DEL	G	TCGA-B9-A69E-01A-11D-A31X-10	37017870	109977966	61137101	36	17964											
VGLL2	245806	hgsc.bcm.edu	37	6	117591730	117591730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	117591730	G	T	117591730	3	4	276	1	0	0	0	0	1	0	0	0	17171	1087	38	4	426	4	VGLL2	6	117591730	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	7613764	117591730	53523337	37	17965											
C6orf170	221322	hgsc.bcm.edu	37	6	121433801	121433801	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	121433801	G	T	121433801	4	4	276	1	0	0	0	0	0	1	0	0	2346	1195	42	4	615	4	C6orf170	6	121433801	Nonsense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	3842071	121433801	49681266	38	17966											
FNDC1	84624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	159655428	159655428	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	159655428	T	G	159655428	3	3	276	1	0	0	0	0	1	0	0	0	5975	1464	51	5	3926	5	FNDC1	6	159655428	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	38221627	159655428	11459639	39	17967											
ACTB	60	broad.mit.edu	37	7	5567474	5567474	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	5567474	T	G	5567474	3	3	276	1	0	0	0	0	1	0	0	0	193	1464	51	5	98	5	ACTB	7	5567474	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10		5567474	153571189	40	17968											
THSD7A	221981	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	11500346	11500346	+	Missense_Mutation	SNP	C	C	T	rs199705914		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	11500346	C	T	11500346	3	4	276	1	0	0	0	0	1	0	0	0	15891	536	19	1	2493	1	THSD7A	7	11500346	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	5932872	11500346	147638317	41	17969											
TRIP6	7205	broad.mit.edu;bcgsc.ca	37	7	100466248	100466248	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	100466248	C	T	100466248	2	4	276	1	0	0	0	0	0	0	0	1	16571	726	26	2		2	TRIP6	7	100466248	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	88965902	100466248	58672415	42	17970											
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	112724144	112724146	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	112724146	ATC	-	112724144	7	5	276	1	0	1	0	1	0	0	0	0	6722	330	12	0	483	0	GPR85	7	112724144	In_Frame_Del	DEL	ATC	TCGA-B9-A69E-01A-11D-A31X-10	12257896	112724144	46414519	43	17971											
RBM28	55131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	127958110	127958111	+	In_Frame_Ins	INS	-	-	GAC	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	GAC	127958111	-	GAC	127958110	7	5	276	1	0	1	1	0	0	0	0	0	13141	1580	55	0	686	0	RBM28	7	127958110	In_Frame_Ins	INS	-	TCGA-B9-A69E-01A-11D-A31X-10	15233966	127958110	31180553	44	17972											
LSM1	27257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38027436	38027436	+	Splice_Site	DEL	C	C	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	38027436	C	-	38027436	8	5	276	1	0	1	0	1	0	0	1	0	9057	811	28	0	294	0	LSM1	8	38027436	Splice_Site	DEL	C	TCGA-B9-A69E-01A-11D-A31X-10		38027436	108336586	45	17973											
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	94805453	94805453	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	94805453	G	C	94805453	3	2	276	1	0	0	0	0	1	0	0	0	16208	971	34	4	1803	4	TMEM67	8	94805453	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	56778017	94805453	51558569	46	17974											
FAM91A1	157769	broad.mit.edu	37	8	124796777	124796777	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	124796777	G	C	124796777	3	2	276	1	0	0	0	0	1	0	0	0	5658	933	33	4	805	4	FAM91A1	8	124796777	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	29991324	124796777	21567245	47	17975											
DNAJC25	548645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114412019	114412019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	114412019	A	G	114412019	3	3	276	1	0	0	0	0	1	0	0	0	4645	449	16	3	786	3	DNAJC25	9	114412019	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		114412019	26801412	48	17976											
ANGPTL2	23452	broad.mit.edu	37	9	129870363	129870363	+	Silent	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	129870363	T	G	129870363	2	3	276	1	0	0	0	0	0	0	0	1	614	1683	59	5		5	ANGPTL2	9	129870363	Silent	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	15458344	129870363	11343068	49	17977											
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21970293	21970293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	21970293	T	A	21970293	3	1	276	1	0	0	0	0	1	0	0	0	9633	1812	63	5	1696	5	MLLT10	10	21970293	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10		21970293	113564454	50	17978											
ENKUR	219670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	25288439	25288439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	25288439	G	T	25288439	3	4	276	1	0	0	0	0	1	0	0	0	5122	1368	48	4	676	4	ENKUR	10	25288439	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	3318146	25288439	110246308	51	17979											
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71136714	71136714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	71136714	G	T	71136714	3	4	276	1	0	0	0	0	1	0	0	0	7197	1377	48	4	1108	4	HK1	10	71136714	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	45848275	71136714	64398033	52	17980											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104103846	104103846	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	104103846	T	G	104103846	3	3	276	1	0	0	0	0	1	0	0	0	6278	1841	64	5	212	5	GBF1	10	104103846	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	32967132	104103846	31430901	53	17981											
OR52M1	119772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4567069	4567069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	4567069	A	T	4567069	3	4	276	1	0	0	0	0	1	0	0	0	11133	449	16	5	651	5	OR52M1	11	4567069	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		4567069	130439447	54	17982											
RIC3	79608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	8132577	8132577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	8132577	C	T	8132577	3	4	276	1	0	0	0	0	1	0	0	0	13367	922	32	2	335	2	RIC3	11	8132577	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	3565508	8132577	126873939	55	17983											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46895104	46895104	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	46895104	C	G	46895104	3	3	276	1	0	0	0	0	1	0	0	0	8966	652	23	4	1487	4	LRP4	11	46895104	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	38762527	46895104	88111412	56	17984											
BRMS1	25855	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	66108763	66108763	+	Missense_Mutation	SNP	T	T	A	rs199933125	byfrequency;alternate_allele	TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	66108763	T	A	66108763	3	1	276	1	0	0	0	0	1	0	0	0	1518	1551	54	5	640	5	BRMS1	11	66108763	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	19213659	66108763	68897753	57	17985											
CASP1	834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	104901192	104901192	+	Silent	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	104901192	A	C	104901192	2	2	276	1	0	0	0	0	0	0	0	1	2670	117	5	5		5	CASP1	11	104901192	Silent	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	38792429	104901192	30105324	58	17986											
OR10G9	219870	bcgsc.ca	37	11	123894195	123894195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	123894195	C	T	123894195	3	4	276	1	0	0	0	0	1	0	0	0	10911	507	18	2	478	2	OR10G9	11	123894195	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	18993003	123894195	11112321	59	17987											
BCDIN3D	144233	ucsc.edu;bcgsc.ca	37	12	50232259	50232259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	50232259	G	T	50232259	3	4	276	1	0	0	0	0	1	0	0	0	1357	1194	42	4	108	4	BCDIN3D	12	50232259	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10		50232259	83619636	60	17988											
TAOK3	51347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118651868	118651868	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	118651868	A	T	118651868	3	4	276	1	0	0	0	0	1	0	0	0	15561	449	16	5	2053	5	TAOK3	12	118651868	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	68419609	118651868	15200027	61	17989											
ATP7B	540	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52509756	52509756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	52509756	A	G	52509756	3	3	276	1	0	0	0	0	1	0	0	0	1191	159	6	3	308	3	ATP7B	13	52509756	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		52509756	62660122	62	17990											
G2E3	55632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31081505	31081505	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	31081505	G	A	31081505	2	1	276	1	0	0	0	0	0	0	0	1	6147	1045	37	1		1	G2E3	14	31081505	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10		31081505	76268035	63	17991											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45645152	45645152	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	45645152	C	G	45645152	3	3	276	1	0	0	0	0	1	0	0	0	5678	747	26	4	3249	4	FANCM	14	45645152	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	14563647	45645152	61704388	64	17992											
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55642723	55642723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	55642723	C	A	55642723	3	1	276	1	0	0	0	0	1	0	0	0	4565	797	28	4	1616	4	DLGAP5	14	55642723	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	9997571	55642723	51706817	65	17993											
APBA2	321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	29346718	29346718	+	Missense_Mutation	SNP	C	C	T	rs149847107		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	29346718	C	T	29346718	3	4	276	1	0	0	0	0	1	0	0	0	757	652	23	1	633	1	APBA2	15	29346718	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		29346718	73184674	66	17994											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51285700	51285700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	51285700	G	T	51285700	3	4	276	1	0	0	0	0	1	0	0	0	752	942	33	4	2290	4	AP4E1	15	51285700	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	21938982	51285700	51245692	67	17995											
MESP2	145873	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90321562	90321562	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	90321562	C	T	90321562	2	4	276	1	0	0	0	0	0	0	0	1	9490	576	20	2		2	MESP2	15	90321562	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	39035862	90321562	12209830	68	17996											
CHD2	1106	hgsc.bcm.edu	37	15	93541851	93541851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	93541851	G	T	93541851	3	4	276	1	0	0	0	0	1	0	0	0	3327	1014	35	4	4130	4	CHD2	15	93541851	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	3220289	93541851	8989541	69	17997											
CCDC64B	146439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3078701	3078701	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	3078701	T	A	3078701	3	1	276	1	0	0	0	0	1	0	0	0	2838	1623	56	5	300	5	CCDC64B	16	3078701	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10		3078701	87276052	70	17998											
ZNF75A	7627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3367508	3367508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	3367508	T	C	3367508	3	2	276	1	0	0	0	0	1	0	0	0	18145	1493	52	3	540	3	ZNF75A	16	3367508	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	288807	3367508	86987245	71	17999											
NLRC3	197358	ucsc.edu	37	16	3593429	3593429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	3593429	G	T	3593429	3	4	276	1	0	0	0	0	1	0	0	0	10475	942	33	4	278	4	NLRC3	16	3593429	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	225921	3593429	86761324	72	18000											
TMC5	79838	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19474632	19474632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	19474632	G	T	19474632	3	4	276	1	0	0	0	0	1	0	0	0	16000	933	33	4	1511	4	TMC5	16	19474632	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	15881203	19474632	70880121	73	18001											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27549611	27549611	+	Silent	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	27549611	C	T	27549611	2	4	276	1	0	0	0	0	0	0	0	1	6879	680	24	2		2	GTF3C1	16	27549611	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	8074979	27549611	62805142	74	18002											
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68853183	68853183	+	Silent	SNP	A	A	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	68853183	A	C	68853183	2	2	276	1	0	0	0	0	0	0	0	1	3097	347	12	5		5	CDH1	16	68853183	Silent	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	41303572	68853183	21501570	75	18003											
CPNE7	27132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89650107	89650107	+	Silent	SNP	T	T	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	89650107	T	A	89650107	2	1	276	1	0	0	0	0	0	0	0	1	3819	1800	63	5		5	CPNE7	16	89650107	Silent	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	20796924	89650107	704646	76	18004											
ATPAF2	91647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17925092	17925092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	17925092	G	A	17925092	3	1	276	1	0	0	0	0	1	0	0	0	1201	1348	47	2	298	2	ATPAF2	17	17925092	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10		17925092	63270118	77	18005											
TIMP2	7077	hgsc.bcm.edu	37	17	76921135	76921135	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	76921135	G	A	76921135	2	1	276	1	0	0	0	0	0	0	0	1	15930	1045	37	1		1	TIMP2	17	76921135	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	58996043	76921135	4274075	78	18006											
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	2610806	2610806	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	2610806	A	-	2610806	7	5	276	1	0	1	0	1	0	0	0	0	10249	233	9	0	1795	0	NDC80	18	2610806	Frame_Shift_Del	DEL	A	TCGA-B9-A69E-01A-11D-A31X-10		2610806	75466442	79	18007											
DYM	54808	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46798650	46798650	+	Silent	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	46798650	C	G	46798650	2	3	276	1	0	0	0	0	0	0	0	1	4842	465	17	4		4	DYM	18	46798650	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	44187844	46798650	31278598	80	18008											
HMHA1	23526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1082889	1082889	+	Silent	SNP	G	G	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	1082889	G	T	1082889	2	4	276	1	0	0	0	0	0	0	0	1	7247	1335	47	4		4	HMHA1	19	1082889	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10		1082889	58046094	81	18009											
SAFB	6294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5653148	5653148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	5653148	C	T	5653148	3	4	276	1	0	0	0	0	1	0	0	0	13819	478	17	2	1354	2	SAFB	19	5653148	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	4570259	5653148	53475835	82	18010											
MRI1	84245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13883025	13883025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	13883025	A	T	13883025	3	4	276	1	0	0	0	0	1	0	0	0	9777	304	11	5	1155	5	MRI1	19	13883025	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	8229877	13883025	45245958	83	18011											
PRKACA	5566	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14211641	14211641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	14211641	A	G	14211641	3	3	276	1	0	0	0	0	1	0	0	0	12507	246	9	3	663	3	PRKACA	19	14211641	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	328616	14211641	44917342	84	18012											
USHBP1	83878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17366410	17366410	+	Silent	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	17366410	G	A	17366410	2	1	276	1	0	0	0	0	0	0	0	1	17049	1219	43	2		2	USHBP1	19	17366410	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	3154769	17366410	41762573	85	18013											
NCAN	1463	broad.mit.edu	37	19	19360601	19360603	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	19360603	CAC	-	19360601	7	5	276	1	0	1	0	1	0	0	0	0	10211	478	17	0	3901	0	NCAN	19	19360601	In_Frame_Del	DEL	CAC	TCGA-B9-A69E-01A-11D-A31X-10	1994191	19360601	39768382	86	18014											
C19orf40	91442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	33464971	33464972	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	33464972	-	A	33464971	7	5	276	1	0	1	1	0	0	0	0	0	1925	1403	49	0	259	0	C19orf40	19	33464971	Frame_Shift_Ins	INS	-	TCGA-B9-A69E-01A-11D-A31X-10	14104370	33464971	25664012	87	18015											
CBLC	23624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	45281521	45281521	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	45281521	C	G	45281521	3	3	276	1	0	0	0	0	1	0	0	0	2704	854	30	4	335	4	CBLC	19	45281521	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	11816550	45281521	13847462	88	18016											
ZNF577	84765	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	52376955	52376955	+	Silent	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	52376955	A	G	52376955	2	3	276	1	0	0	0	0	0	0	0	1	18021	127	5	3		3	ZNF577	19	52376955	Silent	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	7095434	52376955	6752028	89	18017											
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58489700	58489700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	58489700	T	C	58489700	3	2	276	1	0	0	0	0	1	0	0	0	18044	1580	55	3	34	3	ZNF606	19	58489700	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	6112745	58489700	639283	90	18018											
SIRPA	140885	bcgsc.ca	37	20	1902142	1902142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	1902142	A	G	1902142	3	3	276	1	0	0	0	0	1	0	0	0	14345	217	8	3	548	3	SIRPA	20	1902142	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		1902142	61123378	91	18019											
TTPAL	79183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43108944	43108944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	G	43108944	A	G	43108944	3	3	276	1	0	0	0	0	1	0	0	0	16749	391	14	3	307	3	TTPAL	20	43108944	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	41206802	43108944	19916576	92	18020											
ADA	100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43251682	43251682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	43251682	G	A	43251682	3	1	276	1	0	0	0	0	1	0	0	0	230	1203	42	2	471	2	ADA	20	43251682	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	142738	43251682	19773838	93	18021											
KCNE2	9992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35743124	35743124	+	Missense_Mutation	SNP	C	C	T	rs199473367		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	35743124	C	T	35743124	3	4	276	1	0	0	0	0	1	0	0	0	8030	768	27	1	349	1	KCNE2	21	35743124	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		35743124	12386771	94	18022											
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	39671646	39671649	+	Frame_Shift_Del	DEL	TTGA	TTGA	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	TTGA	TTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	39671649	TTGA	-	39671646	7	5	276	1	0	1	0	1	0	0	0	0	8056	1606	56	0	465	0	KCNJ15	21	39671646	Frame_Shift_Del	DEL	TTGA	TCGA-B9-A69E-01A-11D-A31X-10	3928522	39671646	8458249	95	18023											
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41043810	41043810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	T	41043810	C	T	41043810	3	4	276	1	0	0	0	0	1	0	0	0	17102	739	26	2	3526	2	USP9X	23	41043810	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		41043810	114226750	96	18024											
WDR13	64743	ucsc.edu;bcgsc.ca	37	X	48462761	48462761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	A	48462761	G	A	48462761	3	1	276	1	0	0	0	0	1	0	0	0	17287	1087	38	1	1286	1	WDR13	23	48462761	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	7418951	48462761	106807799	97	18025											
GPR174	84636	hgsc.bcm.edu;bcgsc.ca	37	X	78426874	78426874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	-	78426874	T	-	78426874	7	5	276	1	0	1	0	1	0	0	0	0	6679	1609	56	0	372	0	GPR174	23	78426874	Frame_Shift_Del	DEL	T	TCGA-B9-A69E-01A-11D-A31X-10	29964113	78426874	76843686	98	18026											
UPF3B	65109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118977251	118977251	+	Silent	SNP	T	T	C	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	C	118977251	T	C	118977251	2	2	276	1	0	0	0	0	0	0	0	1	17018	1780	62	3		3	UPF3B	23	118977251	Silent	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	40550377	118977251	36293309	99	18027											
SLC5A9	200010	hgsc.bcm.edu;ucsc.edu	37	1	48694801	48694801	+	Silent	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	48694801	C	T	48694801	2	4	277	1	0	0	0	0	0	0	0	1	14685	477	17	2		2	SLC5A9	1	48694801	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10		48694801	200555820	1	18028											
KANK4	163782	hgsc.bcm.edu	37	1	62740524	62740524	+	Silent	SNP	T	G	G	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	G	62740524	G	G	62740524	2	3	277	1	0	0	0	0	0	0	0	1	7986	1567	55	5		5	KANK4	1	62740524	Silent	SNP	T	TCGA-BP-4158-01A-02D-1366-10	14045723	62740524	186510097	2	18029											
ZNF687	57592	hgsc.bcm.edu	37	1	151259273	151259273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	G	151259273	A	G	151259273	3	3	277	1	0	0	0	0	1	0	0	0	18104	304	11	3	508	3	ZNF687	1	151259273	Missense_Mutation	SNP	A	TCGA-BP-4158-01A-02D-1366-10	88518749	151259273	97991348	3	18030											
TRAF5	7188	hgsc.bcm.edu	37	1	211545632	211545632	+	Missense_Mutation	SNP	T	T	A	rs78225734	alternate_allele	TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	211545632	T	A	211545632	3	1	277	1	0	0	0	0	1	0	0	0	16456	1696	59	5	1300	5	TRAF5	1	211545632	Missense_Mutation	SNP	T	TCGA-BP-4158-01A-02D-1366-10	60286359	211545632	37704989	4	18031											
MYO7B	4648	hgsc.bcm.edu	37	2	128380888	128380888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	128380888	G	A	128380888	3	1	277	1	0	0	0	0	1	0	0	0	10090	1087	38	1	3785	1	MYO7B	2	128380888	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10		128380888	114818485	5	18032											
LRP1B	53353	hgsc.bcm.edu	37	2	141571374	141571374	+	Silent	SNP	A	A	G	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	G	141571374	A	G	141571374	2	3	277	1	0	0	0	0	0	0	0	1	8962	289	10	3		3	LRP1B	2	141571374	Silent	SNP	A	TCGA-BP-4158-01A-02D-1366-10	13190486	141571374	101627999	6	18033											
COL3A1	1281	hgsc.bcm.edu	37	2	189860859	189860859	+	Silent	SNP	C	C	T	rs141091206		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	189860859	C	T	189860859	2	4	277	1	0	0	0	0	0	0	0	1	3690	639	23	1		1	COL3A1	2	189860859	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10	48289485	189860859	53338514	7	18034											
INO80D	54891	hgsc.bcm.edu	37	2	206882406	206882406	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	206882406	T	A	206882406	3	1	277	1	0	0	0	0	1	0	0	0	7756	1493	52	5	1559	5	INO80D	2	206882406	Missense_Mutation	SNP	T	TCGA-BP-4158-01A-02D-1366-10	17021547	206882406	36316967	8	18035											
D2HGDH	728294	hgsc.bcm.edu	37	2	242684222	242684222	+	Silent	SNP	T	T	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	242684222	T	A	242684222	2	1	277	1	0	0	0	0	0	0	0	1	4215	1596	56	5		5	D2HGDH	2	242684222	Silent	SNP	T	TCGA-BP-4158-01A-02D-1366-10	35801816	242684222	515151	9	18036											
SETD5	55209	hgsc.bcm.edu;ucsc.edu	37	3	9482172	9482172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	9482172	G	C	9482172	3	2	277	1	0	0	0	0	1	0	0	0	14147	933	33	4	622	4	SETD5	3	9482172	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10		9482172	188540258	10	18037											
SLC6A1	6529	hgsc.bcm.edu;ucsc.edu	37	3	11067963	11067963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	11067963	G	A	11067963	3	1	277	1	0	0	0	0	1	0	0	0	14686	1377	48	2	1026	2	SLC6A1	3	11067963	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10	1585791	11067963	186954467	11	18038											
NBEAL2	23218	hgsc.bcm.edu	37	3	47050126	47050126	+	Silent	SNP	C	C	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	47050126	C	A	47050126	2	1	277	1	0	0	0	0	0	0	0	1	10196	610	22	4		4	NBEAL2	3	47050126	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10	35982163	47050126	150972304	12	18039											
ZNF589	51385	hgsc.bcm.edu	37	3	48310107	48310107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	48310107	G	A	48310107	3	1	277	1	0	0	0	0	1	0	0	0	18033	1377	48	2	940	2	ZNF589	3	48310107	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10	1259981	48310107	149712323	13	18040											
PBRM1	55193	ucsc.edu	37	3	52649466	52649467	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	TA	TA	TA	-	TA	TA	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	-	52649467	TA	-	52649466	7	5	277	1	0	1	0	1	0	0	0	0	11498	1754	61	0	3139	0	PBRM1	3	52649466	Frame_Shift_Del	DEL	TA	TCGA-BP-4158-01A-02D-1366-10	4339359	52649466	145372964	14	18041											
HLTF	6596	hgsc.bcm.edu;ucsc.edu	37	3	148789184	148789184	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	148789184	C	T	148789184	4	4	277	1	0	0	0	0	0	1	0	0	7222	595	21	2	2356	2	HLTF	3	148789184	Nonsense_Mutation	SNP	C	TCGA-BP-4158-01A-02D-1366-10	96139718	148789184	49233246	15	18042											
MED12L	116931	hgsc.bcm.edu;ucsc.edu	37	3	151067920	151067920	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	G	151067920	C	G	151067920	3	3	277	1	0	0	0	0	1	0	0	0	9436	710	25	4	2277	4	MED12L	3	151067920	Missense_Mutation	SNP	C	TCGA-BP-4158-01A-02D-1366-10	2278736	151067920	46954510	16	18043											
PPEF2	5470	hgsc.bcm.edu;ucsc.edu	37	4	76805891	76805891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	76805891	C	T	76805891	3	4	277	1	0	0	0	0	1	0	0	0	12315	652	23	1	1699	1	PPEF2	4	76805891	Missense_Mutation	SNP	C	TCGA-BP-4158-01A-02D-1366-10		76805891	114348385	17	18044											
CENPK	64105	hgsc.bcm.edu;ucsc.edu	37	5	64847410	64847410	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	64847410	C	T	64847410	4	4	277	1	0	0	0	0	0	1	0	0	3237	740	26	2	615	2	CENPK	5	64847410	Nonsense_Mutation	SNP	C	TCGA-BP-4158-01A-02D-1366-10		64847410	116067850	18	18045											
HSPA9	3313	hgsc.bcm.edu;ucsc.edu	37	5	137902712	137902712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	G	137902712	A	G	137902712	3	3	277	1	0	0	0	0	1	0	0	0	7424	101	4	3	1222	3	HSPA9	5	137902712	Missense_Mutation	SNP	A	TCGA-BP-4158-01A-02D-1366-10	73055302	137902712	43012548	19	18046											
PPP2R5D	5528	hgsc.bcm.edu;ucsc.edu	37	6	42975942	42975942	+	Silent	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	42975942	C	T	42975942	2	4	277	1	0	0	0	0	0	0	0	1	12405	825	29	2		2	PPP2R5D	6	42975942	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10		42975942	128139125	20	18047											
RUNX2	860	hgsc.bcm.edu	37	6	45514873	45514873	+	Missense_Mutation	SNP	C	C	A	rs144852234	alternate_allele	TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	45514873	C	A	45514873	3	1	277	1	0	0	0	0	1	0	0	0	13761	681	24	4	1443	4	RUNX2	6	45514873	Missense_Mutation	SNP	C	TCGA-BP-4158-01A-02D-1366-10	2538931	45514873	125600194	21	18048											
EYS	346007	hgsc.bcm.edu;ucsc.edu	37	6	66205285	66205285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	66205285	C	T	66205285	3	4	277	1	0	0	0	0	1	0	0	0	5334	536	19	1	9537	1	EYS	6	66205285	Missense_Mutation	SNP	C	TCGA-BP-4158-01A-02D-1366-10	20690412	66205285	104909782	22	18049											
CHN2	1124	hgsc.bcm.edu;ucsc.edu	37	7	29407578	29407578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	G	29407578	C	G	29407578	3	3	277	1	0	0	0	0	1	0	0	0	3365	623	22	4	129	4	CHN2	7	29407578	Missense_Mutation	SNP	C	TCGA-BP-4158-01A-02D-1366-10		29407578	129731085	23	18050											
ZP3	7784	hgsc.bcm.edu	37	7	76071183	76071184	+	Frame_Shift_Ins	INS	-	-	G	rs3215870	bycluster	TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	G	76071184	-	G	76071183	7	5	277	1	0	1	1	0	0	0	0	0	18229	1696	59	0	1115	0	ZP3	7	76071183	Frame_Shift_Ins	INS	-	TCGA-BP-4158-01A-02D-1366-10	46663605	76071183	83067480	24	18051											
SRRT	51593	hgsc.bcm.edu	37	7	100478987	100478987	+	Silent	SNP	A	A	G	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	G	100478987	A	G	100478987	2	3	277	1	0	0	0	0	0	0	0	1	15184	146	6	3		3	SRRT	7	100478987	Silent	SNP	A	TCGA-BP-4158-01A-02D-1366-10	24407804	100478987	58659676	25	18052											
PSMC2	5701	hgsc.bcm.edu;ucsc.edu	37	7	103004703	103004703	+	Silent	SNP	G	G	T	rs144680798	alternate_allele	TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	103004703	G	T	103004703	2	4	277	1	0	0	0	0	0	0	0	1	12696	1132	40	4		4	PSMC2	7	103004703	Silent	SNP	G	TCGA-BP-4158-01A-02D-1366-10	2525716	103004703	56133960	26	18053											
FBXO43	286151	hgsc.bcm.edu	37	8	101153258	101153258	+	Silent	SNP	T	T	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	101153258	T	C	101153258	2	2	277	1	0	0	0	0	0	0	0	1	5759	1838	64	3		3	FBXO43	8	101153258	Silent	SNP	T	TCGA-BP-4158-01A-02D-1366-10		101153258	45210764	27	18054											
TNFRSF11B	4982	hgsc.bcm.edu;ucsc.edu	37	8	119938824	119938824	+	Silent	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	119938824	C	T	119938824	2	4	277	1	0	0	0	0	0	0	0	1	16297	726	26	2		2	TNFRSF11B	8	119938824	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10	18785566	119938824	26425198	28	18055											
PHF20L1	51105	hgsc.bcm.edu;ucsc.edu	37	8	133807018	133807018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	133807018	G	C	133807018	3	2	277	1	0	0	0	0	1	0	0	0	11839	942	33	4	305	4	PHF20L1	8	133807018	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10	13868194	133807018	12557004	29	18056											
DFNB31	25861	hgsc.bcm.edu	37	9	117166206	117166206	+	Missense_Mutation	SNP	G	G	T	rs2274158	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	117166206	G	T	117166206	3	4	277	1	0	0	0	0	1	0	0	0	4457	1136	40	4	347	4	DFNB31	9	117166206	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10		117166206	24047225	30	18057											
LAMC3	10319	hgsc.bcm.edu;ucsc.edu	37	9	133942465	133942465	+	Silent	SNP	C	C	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	133942465	C	A	133942465	2	1	277	1	0	0	0	0	0	0	0	1	8623	697	25	4		4	LAMC3	9	133942465	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10	16776259	133942465	7270966	31	18058											
RET	5979	hgsc.bcm.edu	37	10	43602000	43602000	+	Silent	SNP	G	G	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	43602000	G	C	43602000	2	2	277	1	0	0	0	0	0	0	0	1	13248	1219	43	4		4	RET	10	43602000	Silent	SNP	G	TCGA-BP-4158-01A-02D-1366-10		43602000	91932747	32	18059											
C10orf54	64115	hgsc.bcm.edu	37	10	73521776	73521776	+	Silent	SNP	C	C	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	73521776	C	A	73521776	2	1	277	1	0	0	0	0	0	0	0	1	1609	581	21	4		4	C10orf54	10	73521776	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10	29919776	73521776	62012971	33	18060											
C10orf93	0	hgsc.bcm.edu;ucsc.edu	37	10	134755189	134755189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	134755189	A	C	134755189	3	2	277	1	0	0	0	0	1	0	0	0	1627	217	8	5	1033	5	C10orf93	10	134755189	Missense_Mutation	SNP	A	TCGA-BP-4158-01A-02D-1366-10	61233413	134755189	779558	34	18061											
PHF21A	51317	hgsc.bcm.edu	37	11	45955639	45955639	+	Silent	SNP	C	C	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	45955639	C	A	45955639	2	1	277	1	0	0	0	0	0	0	0	1	11840	610	22	4		4	PHF21A	11	45955639	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10		45955639	89050877	35	18062											
ATG2A	23130	hgsc.bcm.edu	37	11	64681629	64681629	+	Silent	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	64681629	C	T	64681629	2	4	277	1	0	0	0	0	0	0	0	1	1093	610	22	2		2	ATG2A	11	64681629	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10	18725990	64681629	70324887	36	18063											
CARD17	440068	hgsc.bcm.edu;ucsc.edu	37	11	104971442	104971442	+	Silent	SNP	G	G	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	104971442	G	A	104971442	2	1	277	1	0	0	0	0	0	0	0	1	2650	958	34	2		2	CARD17	11	104971442	Silent	SNP	G	TCGA-BP-4158-01A-02D-1366-10	40289813	104971442	30035074	37	18064											
C1R	715	hgsc.bcm.edu	37	12	7188437	7188437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	7188437	G	T	7188437	3	4	277	1	0	0	0	0	1	0	0	0	1974	1232	43	4	604	4	C1R	12	7188437	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10		7188437	126663458	38	18065											
FAM179B	23116	hgsc.bcm.edu	37	14	45473301	45473301	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	45473301	A	C	45473301	3	2	277	1	0	0	0	0	1	0	0	0	5510	11	1	5	2390	5	FAM179B	14	45473301	Missense_Mutation	SNP	A	TCGA-BP-4158-01A-02D-1366-10		45473301	61876239	39	18066											
PACS2	23241	hgsc.bcm.edu	37	14	105850749	105850749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	105850749	C	A	105850749	3	1	277	1	0	0	0	0	1	0	0	0	11380	595	21	4	1906	4	PACS2	14	105850749	Missense_Mutation	SNP	C	TCGA-BP-4158-01A-02D-1366-10	60377448	105850749	1498791	40	18067											
TRPM1	4308	hgsc.bcm.edu	37	15	31318395	31318395	+	Silent	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	31318395	C	T	31318395	2	4	277	1	0	0	0	0	0	0	0	1	16597	680	24	2		2	TRPM1	15	31318395	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10		31318395	71212997	41	18068											
SPTBN5	51332	hgsc.bcm.edu	37	15	42179542	42179542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	42179542	G	T	42179542	3	4	277	1	0	0	0	0	1	0	0	0	15134	1299	45	4	10519	4	SPTBN5	15	42179542	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10	10861147	42179542	60351850	42	18069											
SRRM2	23524	hgsc.bcm.edu;ucsc.edu	37	16	2807887	2807887	+	Silent	SNP	T	T	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	2807887	T	C	2807887	2	2	277	1	0	0	0	0	0	0	0	1	15181	1432	50	3		3	SRRM2	16	2807887	Silent	SNP	T	TCGA-BP-4158-01A-02D-1366-10		2807887	87546866	43	18070											
ZNF768	79724	hgsc.bcm.edu;ucsc.edu	37	16	30536622	30536622	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	30536622	T	A	30536622	3	1	277	1	0	0	0	0	1	0	0	0	18153	1580	55	5	787	5	ZNF768	16	30536622	Missense_Mutation	SNP	T	TCGA-BP-4158-01A-02D-1366-10	27728735	30536622	59818131	44	18071											
RNF40	9810	hgsc.bcm.edu	37	16	30773995	30773995	+	Silent	SNP	C	C	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	30773995	C	A	30773995	2	1	277	1	0	0	0	0	0	0	0	1	13506	581	21	4		4	RNF40	16	30773995	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10	237373	30773995	59580758	45	18072											
TSR1	55720	hgsc.bcm.edu;ucsc.edu	37	17	2238608	2238608	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	2238608	T	A	2238608	3	1	277	1	0	0	0	0	1	0	0	0	16676	1580	55	5	1960	5	TSR1	17	2238608	Missense_Mutation	SNP	T	TCGA-BP-4158-01A-02D-1366-10		2238608	78956602	46	18073											
PITPNM3	83394	hgsc.bcm.edu	37	17	6441376	6441376	+	Missense_Mutation	SNP	G	G	A	rs28493751	bycluster;byfrequency;by1000genomes	TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	6441376	G	A	6441376	3	1	277	1	0	0	0	0	1	0	0	0	11959	1232	43	2	2951	2	PITPNM3	17	6441376	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10	4202768	6441376	74753834	47	18074											
SRP68	6730	hgsc.bcm.edu;ucsc.edu	37	17	74053509	74053509	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	74053509	G	C	74053509	3	2	277	1	0	0	0	0	1	0	0	0	15168	971	34	4	966	4	SRP68	17	74053509	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10	67612133	74053509	7141701	48	18075											
ENGASE	64772	hgsc.bcm.edu	37	17	77075667	77075667	+	Silent	SNP	T	T	C	rs3744183	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	77075667	T	C	77075667	2	2	277	1	0	0	0	0	0	0	0	1	5120	1771	62	3		3	ENGASE	17	77075667	Silent	SNP	T	TCGA-BP-4158-01A-02D-1366-10	3022158	77075667	4119543	49	18076											
CEACAM5	1048	hgsc.bcm.edu;ucsc.edu	37	19	42219789	42219789	+	Silent	SNP	C	C	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	42219789	C	A	42219789	2	1	277	1	0	0	0	0	0	0	0	1	3197	813	29	4		4	CEACAM5	19	42219789	Silent	SNP	C	TCGA-BP-4158-01A-02D-1366-10		42219789	16909194	50	18077											
ZFP28	140612	hgsc.bcm.edu;ucsc.edu	37	19	57065085	57065085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	57065085	T	C	57065085	3	2	277	1	0	0	0	0	1	0	0	0	17654	1493	52	3	961	3	ZFP28	19	57065085	Missense_Mutation	SNP	T	TCGA-BP-4158-01A-02D-1366-10	14845296	57065085	2063898	51	18078											
STX16	8675	hgsc.bcm.edu;ucsc.edu	37	20	57251251	57251251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	57251251	G	T	57251251	3	4	277	1	0	0	0	0	1	0	0	0	15351	1020	36	4	916	4	STX16	20	57251251	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10		57251251	5774269	52	18079											
PISD	23761	hgsc.bcm.edu	37	22	32017820	32017820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	A	32017820	G	A	32017820	3	1	277	1	0	0	0	0	1	0	0	0	11953	1058	37	1	876	1	PISD	22	32017820	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10		32017820	19286746	53	18080											
CARD10	29775	hgsc.bcm.edu	37	22	37912256	37912256	+	Silent	SNP	T	T	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	37912256	T	C	37912256	2	2	277	1	0	0	0	0	0	0	0	1	2646	1654	58	3		3	CARD10	22	37912256	Silent	SNP	T	TCGA-BP-4158-01A-02D-1366-10	5894436	37912256	13392310	54	18081											
SHROOM2	357	hgsc.bcm.edu	37	X	9900830	9900830	+	Silent	SNP	G	G	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	9900830	G	T	9900830	2	4	277	1	0	0	0	0	0	0	0	1	14307	1074	38	4		4	SHROOM2	23	9900830	Silent	SNP	G	TCGA-BP-4158-01A-02D-1366-10		9900830	145369730	55	18082											
TLR8	51311	hgsc.bcm.edu;ucsc.edu	37	X	12937362	12937362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	12937362	T	C	12937362	3	2	277	1	0	0	0	0	1	0	0	0	15969	1522	53	3	209	3	TLR8	23	12937362	Missense_Mutation	SNP	T	TCGA-BP-4158-01A-02D-1366-10	3036532	12937362	142333198	56	18083											
GAGE10	643832	hgsc.bcm.edu;ucsc.edu	37	X	49173756	49173756	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	49173756	G	C	49173756	3	2	277	1	0	0	0	0	1	0	0	0	6194	1000	35	4	327	4	GAGE10	23	49173756	Missense_Mutation	SNP	G	TCGA-BP-4158-01A-02D-1366-10	36236394	49173756	106096804	57	18084											
TRO	7216	hgsc.bcm.edu	37	X	54950147	54950147	+	Silent	SNP	G	G	C	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	C	54950147	G	C	54950147	2	2	277	1	0	0	0	0	0	0	0	1	16586	1335	47	4		4	TRO	23	54950147	Silent	SNP	G	TCGA-BP-4158-01A-02D-1366-10	5776391	54950147	100320413	58	18085											
USP51	158880	hgsc.bcm.edu	37	X	55513337	55513337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4158-01A-02D-1366-10	TCGA-BP-4158-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	f134476d-8b3f-43f0-b287-67fa99b5a27f	c6d4b1c9-6267-4655-ae94-3cdc7c8e203e	T	55513337	C	T	55513337	3	4	277	1	0	0	0	0	1	0	0	0	17095	797	28	2	103	2	USP51	23	55513337	Missense_Mutation	SNP	C	TCGA-BP-4158-01A-02D-1366-10	563190	55513337	99757223	59	18086											
NPR1	4881	hgsc.bcm.edu;ucsc.edu	37	1	153659771	153659771	+	Silent	SNP	C	C	A	rs139564474	alternate_allele	TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	153659771	C	A	153659771	2	1	278	1	0	0	0	0	0	0	0	1	10601	639	23	4		4	NPR1	1	153659771	Silent	SNP	C	TCGA-BP-4159-01A-02D-1366-10		153659771	95590850	1	18087											
TDRD5	163589	hgsc.bcm.edu	37	1	179561874	179561874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	179561874	C	A	179561874	3	1	278	1	0	0	0	0	1	0	0	0	15745	594	21	4	126	4	TDRD5	1	179561874	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10	25902103	179561874	69688747	2	18088											
RNASEL	6041	hgsc.bcm.edu;ucsc.edu	37	1	182551218	182551218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	182551218	A	G	182551218	3	3	278	1	0	0	0	0	1	0	0	0	13429	188	7	3	499	3	RNASEL	1	182551218	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10	2989344	182551218	66699403	3	18089											
IKBKE	9641	hgsc.bcm.edu	37	1	206661295	206661295	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	206661295	A	T	206661295	3	4	278	1	0	0	0	0	1	0	0	0	7619	391	14	5	1715	5	IKBKE	1	206661295	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10	24110077	206661295	42589326	4	18090											
PIGR	5284	hgsc.bcm.edu	37	1	207110590	207110590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	207110590	G	A	207110590	3	1	278	1	0	0	0	0	1	0	0	0	11904	971	34	2	1431	2	PIGR	1	207110590	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	449295	207110590	42140031	5	18091											
CEP170	9859	hgsc.bcm.edu	37	1	243336127	243336127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	243336127	G	C	243336127	3	2	278	1	0	0	0	0	1	0	0	0	3252	1299	45	4	3236	4	CEP170	1	243336127	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	36225537	243336127	5914494	6	18092											
EMX1	2016	hgsc.bcm.edu	37	2	73161063	73161063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	73161063	G	A	73161063	3	1	278	1	0	0	0	0	1	0	0	0	5109	1058	37	1	863	1	EMX1	2	73161063	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10		73161063	170038310	7	18093											
PSD4	23550	hgsc.bcm.edu;ucsc.edu	37	2	113942578	113942578	+	Silent	SNP	C	C	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	113942578	C	T	113942578	2	4	278	1	0	0	0	0	0	0	0	1	12659	535	19	1		1	PSD4	2	113942578	Silent	SNP	C	TCGA-BP-4159-01A-02D-1366-10	40781515	113942578	129256795	8	18094											
PTPN4	5775	hgsc.bcm.edu;ucsc.edu	37	2	120709630	120709630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	120709630	G	T	120709630	3	4	278	1	0	0	0	0	1	0	0	0	12803	1290	45	4	1808	4	PTPN4	2	120709630	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	6767052	120709630	122489743	9	18095											
POTEF	728378	hgsc.bcm.edu	37	2	130831983	130831983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	130831983	G	A	130831983	3	1	278	1	0	0	0	0	1	0	0	0	12272	1087	38	1	169	1	POTEF	2	130831983	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	10122353	130831983	112367390	10	18096											
OBFC2A	0	hgsc.bcm.edu;ucsc.edu	37	2	192550347	192550347	+	Silent	SNP	T	T	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	192550347	T	G	192550347	2	3	278	1	0	0	0	0	0	0	0	1	10815	1567	55	5		5	OBFC2A	2	192550347	Silent	SNP	T	TCGA-BP-4159-01A-02D-1366-10	61718364	192550347	50649026	11	18097											
ALS2	57679	hgsc.bcm.edu;ucsc.edu	37	2	202589118	202589118	+	Silent	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	202589118	G	A	202589118	2	1	278	1	0	0	0	0	0	0	0	1	550	933	33	2		2	ALS2	2	202589118	Silent	SNP	G	TCGA-BP-4159-01A-02D-1366-10	10038771	202589118	40610255	12	18098											
AGFG1	3267	hgsc.bcm.edu	37	2	228398468	228398468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	228398468	G	T	228398468	3	4	278	1	0	0	0	0	1	0	0	0	380	1116	39	4	1120	4	AGFG1	2	228398468	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	25809350	228398468	14800905	13	18099											
SPP2	6694	hgsc.bcm.edu;ucsc.edu	37	2	234959667	234959667	+	Silent	SNP	C	C	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	234959667	C	A	234959667	2	1	278	1	0	0	0	0	0	0	0	1	15099	668	24	4		4	SPP2	2	234959667	Silent	SNP	C	TCGA-BP-4159-01A-02D-1366-10	6561199	234959667	8239706	14	18100											
D2HGDH	728294	hgsc.bcm.edu	37	2	242680459	242680459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	242680459	G	A	242680459	3	1	278	1	0	0	0	0	1	0	0	0	4215	1261	44	2	310	2	D2HGDH	2	242680459	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	7720792	242680459	518914	15	18101											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188315	10188315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	10188315	T	C	10188315	3	2	278	1	0	0	0	0	1	0	0	0	17174	1580	55	3	464	3	VHL	3	10188315	Missense_Mutation	SNP	T	TCGA-BP-4159-01A-02D-1366-10		10188315	187834115	16	18102											
PBRM1	55193	ucsc.edu	37	3	52682363	52682363	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	G	-	G	G	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	-	52682363	G	-	52682363	7	5	278	1	0	1	0	1	0	0	0	0	11498	1281	45	0	4186	0	PBRM1	3	52682363	Frame_Shift_Del	DEL	G	TCGA-BP-4159-01A-02D-1366-10	42494048	52682363	145340067	17	18103											
C3orf63	0	hgsc.bcm.edu	37	3	56716710	56716710	+	Missense_Mutation	SNP	T	T	C	rs113199481		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	56716710	T	C	56716710	3	2	278	1	0	0	0	0	1	0	0	0	2241	1850	64	3	4843	3	C3orf63	3	56716710	Missense_Mutation	SNP	T	TCGA-BP-4159-01A-02D-1366-10	4034347	56716710	141305720	18	18104											
DRD3	1814	hgsc.bcm.edu	37	3	113866367	113866367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	113866367	C	T	113866367	3	4	278	1	0	0	0	0	1	0	0	0	4760	594	21	2	797	2	DRD3	3	113866367	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10	57149657	113866367	84156063	19	18105											
RNF212	285498	hgsc.bcm.edu;ucsc.edu	37	4	1075245	1075245	+	Silent	SNP	G	G	A	rs146814980		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	1075245	G	A	1075245	2	1	278	1	0	0	0	0	0	0	0	1	13489	1136	40	1		1	RNF212	4	1075245	Silent	SNP	G	TCGA-BP-4159-01A-02D-1366-10		1075245	190079031	20	18106											
PPP3CA	5530	hgsc.bcm.edu;ucsc.edu	37	4	102015047	102015047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	102015047	G	T	102015047	3	4	278	1	0	0	0	0	1	0	0	0	12407	1319	46	4	933	4	PPP3CA	4	102015047	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	100939802	102015047	89139229	21	18107											
NDST4	64579	hgsc.bcm.edu;ucsc.edu	37	4	115997895	115997895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	115997895	C	T	115997895	3	4	278	1	0	0	0	0	1	0	0	0	10265	864	30	2	2372	2	NDST4	4	115997895	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10	13982848	115997895	75156381	22	18108											
DMXL1	1657	hgsc.bcm.edu;ucsc.edu	37	5	118506224	118506224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	118506224	A	T	118506224	3	4	278	1	0	0	0	0	1	0	0	0	4596	333	12	5	5832	5	DMXL1	5	118506224	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10		118506224	62409036	23	18109											
ROS1	6098	hgsc.bcm.edu;ucsc.edu	37	6	117706977	117706977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	117706977	C	T	117706977	3	4	278	1	0	0	0	0	1	0	0	0	13544	884	31	1	4986	1	ROS1	6	117706977	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10		117706977	53408090	24	18110											
GUSB	2990	hgsc.bcm.edu	37	7	65432870	65432870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	65432870	A	C	65432870	3	2	278	1	0	0	0	0	1	0	0	0	6909	11	1	5	466	5	GUSB	7	65432870	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10		65432870	93705793	25	18111	237	2									
GUSB	2990	hgsc.bcm.edu	37	7	65432873	65432873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	65432873	A	G	65432873	3	3	278	1	0	0	0	0	1	0	0	0	6909	188	7	3	469	3	GUSB	7	65432873	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10	3	65432873	93705790	26	18112	237	2									
GRM8	2918	hgsc.bcm.edu	37	7	126086265	126086265	+	Silent	SNP	G	G	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	126086265	G	T	126086265	2	4	278	1	0	0	0	0	0	0	0	1	6810	1335	47	4		4	GRM8	7	126086265	Silent	SNP	G	TCGA-BP-4159-01A-02D-1366-10	60653392	126086265	33052398	27	18113											
C7orf29	113763	hgsc.bcm.edu;ucsc.edu	37	7	150028096	150028096	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	150028096	G	A	150028096	4	1	278	1	0	0	0	0	0	1	0	0	2387	1241	43	2	605	2	C7orf29	7	150028096	Nonsense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	23941831	150028096	9110567	28	18114											
CYP7B1	9420	hgsc.bcm.edu;ucsc.edu	37	8	65517238	65517238	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	65517238	C	A	65517238	5	1	278	1	0	0	0	0	0	0	1	0	4199	521	18	4	294	4	CYP7B1	8	65517238	Splice_Site	SNP	C	TCGA-BP-4159-01A-02D-1366-10		65517238	80846784	29	18115											
INTS8	55656	hgsc.bcm.edu;ucsc.edu	37	8	95850820	95850820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	95850820	A	G	95850820	3	3	278	1	0	0	0	0	1	0	0	0	7791	449	16	3	1021	3	INTS8	8	95850820	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10	30333582	95850820	50513202	30	18116											
TG	7038	hgsc.bcm.edu;ucsc.edu	37	8	133911116	133911116	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	133911116	C	G	133911116	3	3	278	1	0	0	0	0	1	0	0	0	15825	506	18	4	3345	4	TG	8	133911116	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10	38060296	133911116	12452906	31	18117											
FREM1	158326	hgsc.bcm.edu;ucsc.edu	37	9	14792818	14792818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	14792818	T	C	14792818	3	2	278	1	0	0	0	0	1	0	0	0	6051	1464	51	3	2749	3	FREM1	9	14792818	Missense_Mutation	SNP	T	TCGA-BP-4159-01A-02D-1366-10		14792818	126420613	32	18118											
KLF9	687	hgsc.bcm.edu	37	9	73027905	73027905	+	Silent	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	73027905	G	A	73027905	2	1	278	1	0	0	0	0	0	0	0	1	8360	1219	43	2		2	KLF9	9	73027905	Silent	SNP	G	TCGA-BP-4159-01A-02D-1366-10	58235087	73027905	68185526	33	18119											
S1PR3	1903	hgsc.bcm.edu;ucsc.edu	37	9	91617209	91617209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	91617209	T	C	91617209	3	2	278	1	0	0	0	0	1	0	0	0	13808	1464	51	3	1096	3	S1PR3	9	91617209	Missense_Mutation	SNP	T	TCGA-BP-4159-01A-02D-1366-10	18589304	91617209	49596222	34	18120											
ABL1	25	hgsc.bcm.edu	37	9	133730431	133730431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	133730431	G	A	133730431	3	1	278	1	0	0	0	0	1	0	0	0	92	942	33	2	647	2	ABL1	9	133730431	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	42113222	133730431	7483000	35	18121											
FAM78A	286336	hgsc.bcm.edu	37	9	134136484	134136484	+	Silent	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	134136484	G	A	134136484	2	1	278	1	0	0	0	0	0	0	0	1	5633	962	34	2		2	FAM78A	9	134136484	Silent	SNP	G	TCGA-BP-4159-01A-02D-1366-10	406053	134136484	7076947	36	18122											
ZNF33A	7581	hgsc.bcm.edu	37	10	38343868	38343868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	38343868	C	A	38343868	3	1	278	1	0	0	0	0	1	0	0	0	17866	477	17	4	830	4	ZNF33A	10	38343868	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10		38343868	97190879	37	18123											
LDB3	11155	hgsc.bcm.edu	37	10	88476182	88476182	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	88476182	G	C	88476182	3	2	278	1	0	0	0	0	1	0	0	0	8704	1319	46	4	1700	4	LDB3	10	88476182	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	50132314	88476182	47058565	38	18124											
C10orf28	0	hgsc.bcm.edu;ucsc.edu	37	10	99968925	99968925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	99968925	A	C	99968925	3	2	278	1	0	0	0	0	1	0	0	0	1603	391	14	5	1056	5	C10orf28	10	99968925	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10	11492743	99968925	35565822	39	18125											
DMBT1	1755	hgsc.bcm.edu;ucsc.edu	37	10	124351826	124351826	+	Missense_Mutation	SNP	A	A	G	rs190617825	by1000genomes	TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	124351826	A	G	124351826	3	3	278	1	0	0	0	0	1	0	0	0	4579	72	3	3	2293	3	DMBT1	10	124351826	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10	24382901	124351826	11182921	40	18126											
EBF3	253738	hgsc.bcm.edu	37	10	131671768	131671768	+	Silent	SNP	C	C	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	131671768	C	A	131671768	2	1	278	1	0	0	0	0	0	0	0	1	4884	610	22	4		4	EBF3	10	131671768	Silent	SNP	C	TCGA-BP-4159-01A-02D-1366-10	7319942	131671768	3862979	41	18127											
FZD4	8322	hgsc.bcm.edu	37	11	86662759	86662759	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	86662759	A	C	86662759	3	2	278	1	0	0	0	0	1	0	0	0	6139	14	1	5	578	5	FZD4	11	86662759	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10		86662759	48343757	42	18128											
MLL2	8085	hgsc.bcm.edu	37	12	49427984	49427984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	49427984	G	A	49427984	3	1	278	1	0	0	0	0	1	0	0	0	9628	1116	39	1	6075	1	MLL2	12	49427984	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10		49427984	84423911	43	18129											
DDIT3	1649	hgsc.bcm.edu	37	12	57910757	57910757	+	Silent	SNP	A	A	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	57910757	A	G	57910757	2	3	278	1	0	0	0	0	0	0	0	1	4332	175	7	3		3	DDIT3	12	57910757	Silent	SNP	A	TCGA-BP-4159-01A-02D-1366-10	8482773	57910757	75941138	44	18130											
SLC5A8	160728	hgsc.bcm.edu;ucsc.edu	37	12	101584299	101584299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	101584299	G	T	101584299	3	4	278	1	0	0	0	0	1	0	0	0	14684	1252	44	4	1092	4	SLC5A8	12	101584299	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	43673542	101584299	32267596	45	18131											
PYGL	5836	hgsc.bcm.edu;ucsc.edu	37	14	51372121	51372121	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	51372121	T	G	51372121	3	3	278	1	0	0	0	0	1	0	0	0	12874	1812	63	5	14	5	PYGL	14	51372121	Missense_Mutation	SNP	T	TCGA-BP-4159-01A-02D-1366-10		51372121	55977419	46	18132											
ARHGAP11A	9824	hgsc.bcm.edu	37	15	32921822	32921822	+	Missense_Mutation	SNP	C	C	G	rs145484357	alternate_allele	TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	32921822	C	G	32921822	3	3	278	1	0	0	0	0	1	0	0	0	863	913	32	4	994	4	ARHGAP11A	15	32921822	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10		32921822	69609570	47	18133											
CILP	8483	hgsc.bcm.edu;ucsc.edu	37	15	65489590	65489590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	65489590	C	A	65489590	3	1	278	1	0	0	0	0	1	0	0	0	3431	594	21	4	524	4	CILP	15	65489590	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10	32567768	65489590	37041802	48	18134											
ATP2A1	487	hgsc.bcm.edu	37	16	28912226	28912226	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	28912226	A	C	28912226	3	2	278	1	0	0	0	0	1	0	0	0	1136	333	12	5	2147	5	ATP2A1	16	28912226	Missense_Mutation	SNP	A	TCGA-BP-4159-01A-02D-1366-10		28912226	61442527	49	18135											
LONP2	83752	hgsc.bcm.edu;ucsc.edu	37	16	48286144	48286144	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	48286144	G	C	48286144	3	2	278	1	0	0	0	0	1	0	0	0	8900	991	35	4	342	4	LONP2	16	48286144	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	19373918	48286144	42068609	50	18136											
NUP93	9688	hgsc.bcm.edu	37	16	56875675	56875675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	56875675	T	G	56875675	3	3	278	1	0	0	0	0	1	0	0	0	10779	1841	64	5	2357	5	NUP93	16	56875675	Missense_Mutation	SNP	T	TCGA-BP-4159-01A-02D-1366-10	8589531	56875675	33479078	51	18137											
SREBF1	6720	hgsc.bcm.edu	37	17	17722891	17722891	+	Silent	SNP	A	A	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	17722891	A	G	17722891	2	3	278	1	0	0	0	0	0	0	0	1	15153	175	7	3		3	SREBF1	17	17722891	Silent	SNP	A	TCGA-BP-4159-01A-02D-1366-10		17722891	63472319	52	18138											
ABCC3	8714	hgsc.bcm.edu	37	17	48742604	48742604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	48742604	C	G	48742604	3	3	278	1	0	0	0	0	1	0	0	0	54	595	21	4	1471	4	ABCC3	17	48742604	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10	31019713	48742604	32452606	53	18139											
PPM1E	22843	hgsc.bcm.edu	37	17	57047047	57047047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	57047047	C	T	57047047	3	4	278	1	0	0	0	0	1	0	0	0	12348	643	23	1	945	1	PPM1E	17	57047047	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10	8304443	57047047	24148163	54	18140											
DAND5	199699	hgsc.bcm.edu	37	19	13080510	13080510	+	Silent	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	13080510	G	A	13080510	2	1	278	1	0	0	0	0	0	0	0	1	4232	1306	46	2		2	DAND5	19	13080510	Silent	SNP	G	TCGA-BP-4159-01A-02D-1366-10		13080510	46048473	55	18141											
CCDC105	126402	hgsc.bcm.edu	37	19	15131445	15131445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	15131445	C	A	15131445	3	1	278	1	0	0	0	0	1	0	0	0	2742	594	21	4	858	4	CCDC105	19	15131445	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10	2050935	15131445	43997538	56	18142											
COX6B1	1340	hgsc.bcm.edu;ucsc.edu	37	19	36142196	36142196	+	Silent	SNP	T	T	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	36142196	T	C	36142196	2	2	278	1	0	0	0	0	0	0	0	1	3778	1809	63	3		3	COX6B1	19	36142196	Silent	SNP	T	TCGA-BP-4159-01A-02D-1366-10	21010751	36142196	22986787	57	18143											
CD177	57126	hgsc.bcm.edu;ucsc.edu	37	19	43866359	43866359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	43866359	C	T	43866359	3	4	278	1	0	0	0	0	1	0	0	0	2973	855	30	2	1235	2	CD177	19	43866359	Missense_Mutation	SNP	C	TCGA-BP-4159-01A-02D-1366-10	7724163	43866359	15262624	58	18144											
CACNG7	59284	hgsc.bcm.edu;ucsc.edu	37	19	54444777	54444777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	54444777	G	T	54444777	3	4	278	1	0	0	0	0	1	0	0	0	2564	1261	44	4	492	4	CACNG7	19	54444777	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	10578418	54444777	4684206	59	18145											
PDYN	5173	hgsc.bcm.edu	37	20	1961196	1961196	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	1961196	G	C	1961196	3	2	278	1	0	0	0	0	1	0	0	0	11706	1087	38	4	230	4	PDYN	20	1961196	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10		1961196	61064324	60	18146											
PABPC1L	80336	hgsc.bcm.edu	37	20	43541488	43541488	+	Silent	SNP	T	T	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	43541488	T	C	43541488	2	2	278	1	0	0	0	0	0	0	0	1	11371	1596	56	3		3	PABPC1L	20	43541488	Silent	SNP	T	TCGA-BP-4159-01A-02D-1366-10	41580292	43541488	19484032	61	18147											
TFF1	7031	hgsc.bcm.edu	37	21	43783445	43783445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	G	43783445	T	G	43783445	3	3	278	1	0	0	0	0	1	0	0	0	15815	1841	64	5	105	5	TFF1	21	43783445	Missense_Mutation	SNP	T	TCGA-BP-4159-01A-02D-1366-10		43783445	4346450	62	18148											
FRMPD4	9758	hgsc.bcm.edu	37	X	12701706	12701706	+	Silent	SNP	G	G	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	12701706	G	T	12701706	2	4	278	1	0	0	0	0	0	0	0	1	6066	1130	39	4		4	FRMPD4	23	12701706	Silent	SNP	G	TCGA-BP-4159-01A-02D-1366-10		12701706	142568854	63	18149											
CDKL5	6792	hgsc.bcm.edu	37	X	18622766	18622766	+	Silent	SNP	G	G	T	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	T	18622766	G	T	18622766	2	4	278	1	0	0	0	0	0	0	0	1	3159	1103	39	4		4	CDKL5	23	18622766	Silent	SNP	G	TCGA-BP-4159-01A-02D-1366-10	5921060	18622766	136647794	64	18150											
KDM5C	8242	hgsc.bcm.edu	37	X	53240705	53240705	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	53240705	T	A	53240705	4	1	278	1	0	0	0	0	0	1	0	0	8142	1763	61	5	3473	5	KDM5C	23	53240705	Nonsense_Mutation	SNP	T	TCGA-BP-4159-01A-02D-1366-10	34617939	53240705	102029855	65	18151											
GNL3L	54552	hgsc.bcm.edu	37	X	54577458	54577458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	54577458	G	A	54577458	3	1	278	1	0	0	0	0	1	0	0	0	6545	1145	40	1	872	1	GNL3L	23	54577458	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	1336753	54577458	100693102	66	18152											
KIAA2022	340533	hgsc.bcm.edu	37	X	73964285	73964285	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	A	73964285	T	A	73964285	3	1	278	1	0	0	0	0	1	0	0	0	8276	1609	56	5	4451	5	KIAA2022	23	73964285	Missense_Mutation	SNP	T	TCGA-BP-4159-01A-02D-1366-10	19386827	73964285	81306275	67	18153											
GAB3	139716	hgsc.bcm.edu	37	X	153940887	153940887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	153940887	G	C	153940887	3	2	278	1	0	0	0	0	1	0	0	0	6157	1116	39	4	1105	4	GAB3	23	153940887	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	79976602	153940887	1329673	68	18154											
GAB3	139716	hgsc.bcm.edu	37	X	153940946	153940946	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4159-01A-02D-1366-10	TCGA-BP-4159-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b0b1d34-a704-4d47-89e9-d1b0d187c8de	63af4766-b112-4605-a1b9-a26272148aa7	C	153940946	G	C	153940946	3	2	278	1	0	0	0	0	1	0	0	0	6157	1020	36	4	1164	4	GAB3	23	153940946	Missense_Mutation	SNP	G	TCGA-BP-4159-01A-02D-1366-10	59	153940946	1329614	69	18155											
PANK4	55229	hgsc.bcm.edu;ucsc.edu	37	1	2443118	2443118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	2443118	G	A	2443118	3	1	279	1	0	0	0	0	1	0	0	0	11426	1000	35	2	613	2	PANK4	1	2443118	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10		2443118	246807503	1	18156											
FOXJ3	22887	hgsc.bcm.edu	37	1	42693624	42693624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	42693624	G	A	42693624	3	1	279	1	0	0	0	0	1	0	0	0	6020	1319	46	2	1446	2	FOXJ3	1	42693624	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10	40250506	42693624	206556997	2	18157											
SLC1A7	6512	hgsc.bcm.edu	37	1	53608000	53608000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	53608000	C	T	53608000	3	4	279	1	0	0	0	0	1	0	0	0	14450	768	27	1	1604	1	SLC1A7	1	53608000	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	10914376	53608000	195642621	3	18158											
ACP1	52	hgsc.bcm.edu	37	2	265004	265004	+	Missense_Mutation	SNP	C	C	G	rs147428558	alternate_allele	TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	265004	C	G	265004	3	3	279	1	0	0	0	0	1	0	0	0	162	912	32	4	42	4	ACP1	2	265004	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10		265004	242934369	4	18159											
C2orf43	60526	hgsc.bcm.edu;ucsc.edu	37	2	20990106	20990106	+	Silent	SNP	A	A	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	20990106	A	T	20990106	2	4	279	1	0	0	0	0	0	0	0	1	2169	59	3	5		5	C2orf43	2	20990106	Silent	SNP	A	TCGA-BP-4160-01A-02D-1366-10	20725102	20990106	222209267	5	18160											
DNMT3A	1788	hgsc.bcm.edu	37	2	25498413	25498413	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	25498413	C	T	25498413	5	4	279	1	0	0	0	0	0	0	1	0	4678	695	24	2	2446	2	DNMT3A	2	25498413	Splice_Site	SNP	C	TCGA-BP-4160-01A-02D-1366-10	4508307	25498413	217700960	6	18161											
CCDC108	255101	hgsc.bcm.edu	37	2	219892423	219892423	+	Silent	SNP	A	A	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	219892423	A	G	219892423	2	3	279	1	0	0	0	0	0	0	0	1	2745	291	11	3		3	CCDC108	2	219892423	Silent	SNP	A	TCGA-BP-4160-01A-02D-1366-10	194394010	219892423	23306950	7	18162											
CCR9	10803	hgsc.bcm.edu	37	3	45943248	45943248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	C	45943248	G	C	45943248	3	2	279	1	0	0	0	0	1	0	0	0	2950	942	33	4	974	4	CCR9	3	45943248	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10		45943248	152079182	8	18163											
C3orf36	80111	hgsc.bcm.edu	37	3	133647487	133647487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	133647487	C	T	133647487	3	4	279	1	0	0	0	0	1	0	0	0	2228	681	24	2	340	2	C3orf36	3	133647487	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	87704239	133647487	64374943	9	18164											
ZBTB38	253461	hgsc.bcm.edu	37	3	141164552	141164552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	141164552	A	G	141164552	3	3	279	1	0	0	0	0	1	0	0	0	17551	159	6	3	3324	3	ZBTB38	3	141164552	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10	7517065	141164552	56857878	10	18165											
PIK3CA	5290	hgsc.bcm.edu;ucsc.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	178936091	G	A	178936091	3	1	279	1	0	0	0	0	1	0	0	0	11920	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10	37771539	178936091	19086339	11	18166											
TET2	54790	hgsc.bcm.edu;ucsc.edu	37	4	106196809	106196809	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	106196809	T	G	106196809	3	3	279	1	0	0	0	0	1	0	0	0	15782	1461	51	5	5265	5	TET2	4	106196809	Missense_Mutation	SNP	T	TCGA-BP-4160-01A-02D-1366-10		106196809	84957467	12	18167											
DKK2	27123	hgsc.bcm.edu	37	4	107846995	107846995	+	Silent	SNP	G	G	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	107846995	G	T	107846995	2	4	279	1	0	0	0	0	0	0	0	1	4547	1124	39	4		4	DKK2	4	107846995	Silent	SNP	G	TCGA-BP-4160-01A-02D-1366-10	1650186	107846995	83307281	13	18168											
NAA15	80155	hgsc.bcm.edu	37	4	140280992	140280992	+	Silent	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	140280992	C	T	140280992	2	4	279	1	0	0	0	0	0	0	0	1	10125	489	17	2		2	NAA15	4	140280992	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10	32433997	140280992	50873284	14	18169											
NAIP	4671	hgsc.bcm.edu	37	5	70308462	70308462	+	Missense_Mutation	SNP	C	C	A	rs147757754	alternate_allele	TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	70308462	C	A	70308462	3	1	279	1	0	0	0	0	1	0	0	0	10154	623	22	4	3986	4	NAIP	5	70308462	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10		70308462	110606798	15	18170											
F2RL1	2150	hgsc.bcm.edu	37	5	76129109	76129109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	76129109	G	T	76129109	3	4	279	1	0	0	0	0	1	0	0	0	5346	1377	48	4	683	4	F2RL1	5	76129109	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10	5820647	76129109	104786151	16	18171											
CSF1R	1436	hgsc.bcm.edu	37	5	149436911	149436911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	149436911	C	A	149436911	3	1	279	1	0	0	0	0	1	0	0	0	3934	652	23	4	684	4	CSF1R	5	149436911	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	73307802	149436911	31478349	17	18172											
CFB	629	hgsc.bcm.edu	37	6	31915778	31915778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	31915778	C	A	31915778	3	1	279	1	0	0	0	0	1	0	0	0	3280	680	24	4	839	4	CFB	6	31915778	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10		31915778	139199289	18	18173											
CDK19	23097	hgsc.bcm.edu	37	6	111136336	111136336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	111136336	C	A	111136336	3	1	279	1	0	0	0	0	1	0	0	0	3137	855	30	4	1556	4	CDK19	6	111136336	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	79220558	111136336	59978731	19	18174											
CDHR3	222256	hgsc.bcm.edu;ucsc.edu	37	7	105656408	105656408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	105656408	A	G	105656408	3	3	279	1	0	0	0	0	1	0	0	0	3122	14	1	3	1405	3	CDHR3	7	105656408	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10		105656408	53482255	20	18175											
TRPV5	56302	hgsc.bcm.edu;ucsc.edu	37	7	142609797	142609797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	142609797	A	G	142609797	3	3	279	1	0	0	0	0	1	0	0	0	16611	420	15	3	562	3	TRPV5	7	142609797	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10	36953389	142609797	16528866	21	18176											
EPHA1	2041	hgsc.bcm.edu	37	7	143094667	143094667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	143094667	C	T	143094667	3	4	279	1	0	0	0	0	1	0	0	0	5167	536	19	1	1271	1	EPHA1	7	143094667	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	484870	143094667	16043996	22	18177											
ARFGEF1	10565	hgsc.bcm.edu;ucsc.edu	37	8	68111228	68111228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	68111228	C	T	68111228	3	4	279	1	0	0	0	0	1	0	0	0	852	661	23	1	62	1	ARFGEF1	8	68111228	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10		68111228	78252794	23	18178											
PABPC1	26986	hgsc.bcm.edu	37	8	101721692	101721692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	101721692	G	A	101721692	3	1	279	1	0	0	0	0	1	0	0	0	11370	1232	43	2	698	2	PABPC1	8	101721692	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10	33610464	101721692	44642330	24	18179											
JAK2	3717	hgsc.bcm.edu	37	9	5072516	5072516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	C	5072516	T	C	5072516	3	2	279	1	0	0	0	0	1	0	0	0	7945	1841	64	3	1708	3	JAK2	9	5072516	Missense_Mutation	SNP	T	TCGA-BP-4160-01A-02D-1366-10		5072516	136140915	25	18180			1	34		2	2	45	N	T_C	9.238272e-05
JAK2	3717	hgsc.bcm.edu	37	9	5072560	5072560	+	Silent	SNP	C	C	T	rs146433914	bycluster;by1000genomes	TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	5072560	C	T	5072560	2	4	279	1	0	0	0	0	0	0	0	1	7945	547	19	1		1	JAK2	9	5072560	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10	44	5072560	136140871	26	18181			1	34		2	2	45	N	T_C	9.238272e-05
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18906804	18906804	+	Silent	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	18906804	G	A	18906804	2	1	279	1	0	0	0	0	0	0	0	1	274	1335	47	2		2	ADAMTSL1	9	18906804	Silent	SNP	G	TCGA-BP-4160-01A-02D-1366-10	13834244	18906804	122306627	27	18182											
LRRC19	64922	hgsc.bcm.edu;ucsc.edu	37	9	26995607	26995607	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	26995607	A	T	26995607	3	4	279	1	0	0	0	0	1	0	0	0	8982	14	1	5	91	5	LRRC19	9	26995607	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10	8088803	26995607	114217824	28	18183											
VCP	7415	hgsc.bcm.edu;ucsc.edu	37	9	35062023	35062023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	35062023	A	T	35062023	3	4	279	1	0	0	0	0	1	0	0	0	17152	101	4	5	1398	5	VCP	9	35062023	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10	8066416	35062023	106151408	29	18184											
SLC28A3	64078	hgsc.bcm.edu	37	9	86894964	86894964	+	Missense_Mutation	SNP	C	C	G	rs11568398	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	86894964	C	G	86894964	3	3	279	1	0	0	0	0	1	0	0	0	14546	536	19	4	333	4	SLC28A3	9	86894964	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	51832941	86894964	54318467	30	18185											
SFMBT2	57713	hgsc.bcm.edu	37	10	7239537	7239537	+	Silent	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	7239537	C	A	7239537	2	1	279	1	0	0	0	0	0	0	0	1	14171	639	23	4		4	SFMBT2	10	7239537	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10		7239537	128295210	31	18186											
A1CF	29974	hgsc.bcm.edu	37	10	52575931	52575931	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	52575931	C	A	52575931	4	1	279	1	0	0	0	0	0	1	0	0	2	922	32	4	828	4	A1CF	10	52575931	Nonsense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	45336394	52575931	82958816	32	18187											
SUFU	51684	hgsc.bcm.edu	37	10	104352445	104352445	+	Silent	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	104352445	C	A	104352445	2	1	279	1	0	0	0	0	0	0	0	1	15380	639	23	4		4	SUFU	10	104352445	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10	51776514	104352445	31182302	33	18188											
MTCH2	23788	hgsc.bcm.edu	37	11	47644274	47644274	+	Silent	SNP	A	A	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	47644274	A	G	47644274	2	3	279	1	0	0	0	0	0	0	0	1	9921	41	2	3		3	MTCH2	11	47644274	Silent	SNP	A	TCGA-BP-4160-01A-02D-1366-10		47644274	87362242	34	18189											
SCYL1	57410	hgsc.bcm.edu	37	11	65303520	65303520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	65303520	C	T	65303520	3	4	279	1	0	0	0	0	1	0	0	0	13960	594	21	2	1525	2	SCYL1	11	65303520	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	17659246	65303520	69702996	35	18190											
ITPR2	3709	hgsc.bcm.edu	37	12	26784955	26784955	+	Silent	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	26784955	C	T	26784955	2	4	279	1	0	0	0	0	0	0	0	1	7928	912	32	2		2	ITPR2	12	26784955	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10		26784955	107066940	36	18191											
BICD1	636	hgsc.bcm.edu	37	12	32481360	32481360	+	Silent	SNP	G	G	C	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	C	32481360	G	C	32481360	2	2	279	1	0	0	0	0	0	0	0	1	1428	1219	43	4		4	BICD1	12	32481360	Silent	SNP	G	TCGA-BP-4160-01A-02D-1366-10	5696405	32481360	101370535	37	18192											
FLT1	2321	hgsc.bcm.edu	37	13	28919683	28919683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	28919683	A	G	28919683	3	3	279	1	0	0	0	0	1	0	0	0	5948	304	11	3	1822	3	FLT1	13	28919683	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10		28919683	86250195	38	18193											
NALCN	259232	hgsc.bcm.edu	37	13	101714442	101714442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	101714442	G	A	101714442	3	1	279	1	0	0	0	0	1	0	0	0	10155	1115	39	1	599	1	NALCN	13	101714442	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10	72794759	101714442	13455436	39	18194											
FAM161B	145483	hgsc.bcm.edu	37	14	74411261	74411261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	74411261	C	T	74411261	3	4	279	1	0	0	0	0	1	0	0	0	5477	594	21	2	1269	2	FAM161B	14	74411261	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10		74411261	32938279	40	18195											
TRIP11	9321	hgsc.bcm.edu	37	14	92436049	92436049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	92436049	C	T	92436049	3	4	279	1	0	0	0	0	1	0	0	0	16567	594	21	2	35	2	TRIP11	14	92436049	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	18024788	92436049	14913491	41	18196											
EIF5	1983	hgsc.bcm.edu	37	14	103803541	103803541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	103803541	C	A	103803541	3	1	279	1	0	0	0	0	1	0	0	0	5042	478	17	4	430	4	EIF5	14	103803541	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	11367492	103803541	3545999	42	18197											
ATP8B4	79895	hgsc.bcm.edu;ucsc.edu	37	15	50215637	50215637	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	50215637	A	T	50215637	3	4	279	1	0	0	0	0	1	0	0	0	1197	188	7	5	1929	5	ATP8B4	15	50215637	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10		50215637	52315755	43	18198											
HMG20A	10363	hgsc.bcm.edu	37	15	77756618	77756618	+	Silent	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	77756618	C	T	77756618	2	4	279	1	0	0	0	0	0	0	0	1	7228	581	21	2		2	HMG20A	15	77756618	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10	27540981	77756618	24774774	44	18199											
C17orf81	0	hgsc.bcm.edu	37	17	7160242	7160242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	7160242	G	A	7160242	3	1	279	1	0	0	0	0	1	0	0	0	1888	1203	42	2	542	2	C17orf81	17	7160242	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10		7160242	74034968	45	18200											
CWC25	54883	hgsc.bcm.edu	37	17	36959026	36959026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	C	36959026	T	C	36959026	3	2	279	1	0	0	0	0	1	0	0	0	4071	1821	63	3	195	3	CWC25	17	36959026	Missense_Mutation	SNP	T	TCGA-BP-4160-01A-02D-1366-10	29798784	36959026	44236184	46	18201											
BRCA1	672	hgsc.bcm.edu	37	17	41267787	41267787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	41267787	C	A	41267787	3	1	279	1	0	0	0	0	1	0	0	0	1500	825	29	4	5655	4	BRCA1	17	41267787	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10	4308761	41267787	39927423	47	18202											
ITGB3	3690	hgsc.bcm.edu	37	17	45369718	45369719	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	45369719	-	G	45369718	7	5	279	1	0	1	1	0	0	0	0	0	7902	1580	55	0	1512	0	ITGB3	17	45369718	Frame_Shift_Ins	INS	-	TCGA-BP-4160-01A-02D-1366-10	4101931	45369718	35825492	48	18203											
COG1	9382	hgsc.bcm.edu	37	17	71196785	71196785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	71196785	A	G	71196785	3	3	279	1	0	0	0	0	1	0	0	0	3659	275	10	3	1173	3	COG1	17	71196785	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10	25827067	71196785	9998425	49	18204											
PTPRM	5797	hgsc.bcm.edu	37	18	7955227	7955227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	7955227	G	A	7955227	3	1	279	1	0	0	0	0	1	0	0	0	12819	1058	37	1	973	1	PTPRM	18	7955227	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10		7955227	70122021	50	18205											
ROCK1	6093	hgsc.bcm.edu	37	18	18600158	18600158	+	Silent	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	18600158	G	A	18600158	2	1	279	1	0	0	0	0	0	0	0	1	13530	962	34	2		2	ROCK1	18	18600158	Silent	SNP	G	TCGA-BP-4160-01A-02D-1366-10	10644931	18600158	59477090	51	18206											
DAPK3	1613	hgsc.bcm.edu	37	19	3964716	3964716	+	Silent	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	3964716	C	T	3964716	2	4	279	1	0	0	0	0	0	0	0	1	4239	639	23	1		1	DAPK3	19	3964716	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10		3964716	55164267	52	18207											
LDLR	3949	hgsc.bcm.edu;ucsc.edu	37	19	11217289	11217289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	11217289	G	A	11217289	3	1	279	1	0	0	0	0	1	0	0	0	8711	1319	46	2	761	2	LDLR	19	11217289	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10	7252573	11217289	47911694	53	18208											
PRMT1	3276	hgsc.bcm.edu	37	19	50187293	50187293	+	Silent	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	50187293	C	T	50187293	2	4	279	1	0	0	0	0	0	0	0	1	12545	813	29	2		2	PRMT1	19	50187293	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10	38970004	50187293	8941690	54	18209											
PTPRA	5786	hgsc.bcm.edu	37	20	3016252	3016252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	3016252	C	A	3016252	3	1	279	1	0	0	0	0	1	0	0	0	12808	739	26	4	2012	4	PTPRA	20	3016252	Missense_Mutation	SNP	C	TCGA-BP-4160-01A-02D-1366-10		3016252	60009268	55	18210											
UMODL1	89766	hgsc.bcm.edu;ucsc.edu	37	21	43547853	43547853	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	C	43547853	G	C	43547853	3	2	279	1	0	0	0	0	1	0	0	0	16992	1000	35	4	4060	4	UMODL1	21	43547853	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10		43547853	4582042	56	18211											
USP18	11274	hgsc.bcm.edu	37	22	18640565	18640565	+	Silent	SNP	C	C	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	18640565	C	T	18640565	2	4	279	1	0	0	0	0	0	0	0	1	17061	581	21	2		2	USP18	22	18640565	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10		18640565	32664001	57	18212											
CABIN1	23523	hgsc.bcm.edu	37	22	24434873	24434873	+	Silent	SNP	C	C	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	24434873	C	A	24434873	2	1	279	1	0	0	0	0	0	0	0	1	2530	668	24	4		4	CABIN1	22	24434873	Silent	SNP	C	TCGA-BP-4160-01A-02D-1366-10	5794308	24434873	26869693	58	18213											
MKL1	57591	hgsc.bcm.edu;ucsc.edu	37	22	40825689	40825689	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	C	40825689	A	C	40825689	3	2	279	1	0	0	0	0	1	0	0	0	9608	126	5	5	2609	5	MKL1	22	40825689	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10	16390816	40825689	10478877	59	18214											
NDUFA6	4700	hgsc.bcm.edu;ucsc.edu	37	22	42482291	42482291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	C	42482291	T	C	42482291	3	2	279	1	0	0	0	0	1	0	0	0	10276	1763	61	3	107	3	NDUFA6	22	42482291	Missense_Mutation	SNP	T	TCGA-BP-4160-01A-02D-1366-10	1656602	42482291	8822275	60	18215											
ARSD	414	hgsc.bcm.edu	37	X	2833631	2833631	+	Silent	SNP	A	A	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	2833631	A	G	2833631	2	3	279	1	0	0	0	0	0	0	0	1	989	224	8	3		3	ARSD	23	2833631	Silent	SNP	A	TCGA-BP-4160-01A-02D-1366-10		2833631	152436929	61	18216											
OTC	5009	hgsc.bcm.edu	37	X	38211976	38211976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	T	38211976	A	T	38211976	3	4	279	1	0	0	0	0	1	0	0	0	11308	359	13	5	29	5	OTC	23	38211976	Missense_Mutation	SNP	A	TCGA-BP-4160-01A-02D-1366-10	35378345	38211976	117058584	62	18217											
USP9X	8239	hgsc.bcm.edu	37	X	41047253	41047253	+	Silent	SNP	A	A	G	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	G	41047253	A	G	41047253	2	3	279	1	0	0	0	0	0	0	0	1	17102	330	12	3		3	USP9X	23	41047253	Silent	SNP	A	TCGA-BP-4160-01A-02D-1366-10	2835277	41047253	114223307	63	18218											
GAGE10	643832	hgsc.bcm.edu	37	X	49173729	49173729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	49173729	G	A	49173729	3	1	279	1	0	0	0	0	1	0	0	0	6194	1203	42	2	300	2	GAGE10	23	49173729	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10	8126476	49173729	106096831	64	18219											
CCNB3	85417	hgsc.bcm.edu;ucsc.edu	37	X	50052672	50052672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4160-01A-02D-1366-10	TCGA-BP-4160-11A-01D-1806-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	91fc0b5e-0cb8-48f8-94c0-abf7e668e965	5a1faf3e-afc7-4b3e-880d-5a767db34ab5	A	50052672	G	A	50052672	3	1	279	1	0	0	0	0	1	0	0	0	2916	1377	48	2	1517	2	CCNB3	23	50052672	Missense_Mutation	SNP	G	TCGA-BP-4160-01A-02D-1366-10	878943	50052672	105217888	65	18220											
SEPN1	57190	broad.mit.edu;hgsc.bcm.edu	37	1	26138019	26138019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	C	26138019	T	C	26138019	3	2	280	1	0	0	0	0	1	0	0	0	14069	1406	49	3	1115	3	SEPN1	1	26138019	Missense_Mutation	SNP	T	TCGA-BP-4161-01A-02D-1386-10		26138019	223112602	1	18221											
FNBP1L	54874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	93987691	93987691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	93987691	C	T	93987691	3	4	280	1	0	0	0	0	1	0	0	0	5973	550	19	1	203	1	FNBP1L	1	93987691	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	67849672	93987691	155262930	2	18222											
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu	37	1	144931265	144931265	+	Silent	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	144931265	G	A	144931265	2	1	280	1	0	0	0	0	0	0	0	1	11650	1164	41	2		2	PDE4DIP	1	144931265	Silent	SNP	G	TCGA-BP-4161-01A-02D-1386-10	50943574	144931265	104319356	3	18223											
ZNF687	57592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151259628	151259628	+	Missense_Mutation	SNP	A	A	T	rs149043825		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	151259628	A	T	151259628	3	4	280	1	0	0	0	0	1	0	0	0	18104	69	3	5	863	5	ZNF687	1	151259628	Missense_Mutation	SNP	A	TCGA-BP-4161-01A-02D-1386-10	6328363	151259628	97990993	4	18224											
SLAMF1	6504	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160607007	160607007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	160607007	C	T	160607007	3	4	280	1	0	0	0	0	1	0	0	0	14380	768	27	1	642	1	SLAMF1	1	160607007	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	9347379	160607007	88643614	5	18225											
USH2A	7399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	216052254	216052254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	216052254	C	T	216052254	3	4	280	1	0	0	0	0	1	0	0	0	17048	603	21	2	7322	2	USH2A	1	216052254	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	55445247	216052254	33198367	6	18226											
OR2G2	81470	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247752125	247752125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	247752125	G	A	247752125	3	1	280	1	0	0	0	0	1	0	0	0	11005	1174	41	2	466	2	OR2G2	1	247752125	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10	31699871	247752125	1498496	7	18227											
EPAS1	2034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	46605874	46605874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	46605874	G	A	46605874	3	1	280	1	0	0	0	0	1	0	0	0	5152	1174	41	2	1564	2	EPAS1	2	46605874	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10		46605874	196593499	8	18228											
MEIS1	4211	hgsc.bcm.edu	37	2	66739382	66739383	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	66739383	-	T	66739382	7	5	280	1	0	1	1	0	0	0	0	0	9474	1029	36	0	874	0	MEIS1	2	66739382	Frame_Shift_Ins	INS	-	TCGA-BP-4161-01A-02D-1386-10	20133508	66739382	176459991	9	18229											
ANKRD36	375248	hgsc.bcm.edu	37	2	97883055	97883055	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	-	97883055	G	-	97883055	7	5	280	1	0	1	0	1	0	0	0	0	665	1029	36	0	4053	0	ANKRD36	2	97883055	Frame_Shift_Del	DEL	G	TCGA-BP-4161-01A-02D-1386-10	31143673	97883055	145316318	10	18230											
BAZ2B	29994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160194250	160194250	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	160194250	C	A	160194250	4	1	280	1	0	0	0	0	0	1	0	0	1332	864	30	4	1042	4	BAZ2B	2	160194250	Nonsense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	62311195	160194250	83005123	11	18231											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	169995117	169995117	+	Silent	SNP	A	A	C	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	C	169995117	A	C	169995117	2	2	280	1	0	0	0	0	0	0	0	1	8963	175	7	5		5	LRP2	2	169995117	Silent	SNP	A	TCGA-BP-4161-01A-02D-1386-10	9800867	169995117	73204256	12	18232											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179457765	179457765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	179457765	C	A	179457765	3	1	280	1	0	0	0	0	1	0	0	0	16747	710	25	4	49150	4	TTN	2	179457765	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	9462648	179457765	63741608	13	18233											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47079180	47079181	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	47079181	-	G	47079180	7	5	280	1	0	1	1	0	0	0	0	0	14144	1799	63	0	384	0	SETD2	3	47079180	Frame_Shift_Ins	INS	-	TCGA-BP-4161-01A-02D-1386-10		47079180	150943250	14	18234											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52702514	52702514	+	Silent	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	52702514	C	T	52702514	2	4	280	1	0	0	0	0	0	0	0	1	11498	695	24	2		2	PBRM1	3	52702514	Silent	SNP	C	TCGA-BP-4161-01A-02D-1386-10	5623334	52702514	145319916	15	18235											
CEP97	79598	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	101476746	101476746	+	Silent	SNP	T	T	C	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	C	101476746	T	C	101476746	2	2	280	1	0	0	0	0	0	0	0	1	3265	1461	51	3		3	CEP97	3	101476746	Silent	SNP	T	TCGA-BP-4161-01A-02D-1386-10	48774232	101476746	96545684	16	18236											
MUC4	4585	broad.mit.edu	37	3	195509180	195509180	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	195509180	G	G	195509180	3	3	280	1	0	0	0	0	1	0	0	0	9985	478	17	4		4	MUC4	3	195509180	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	94032434	195509180	2513250	17	18237											
MUC7	4589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71346891	71346891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	71346891	A	T	71346891	3	4	280	1	0	0	0	0	1	0	0	0	9988	14	1	5	436	5	MUC7	4	71346891	Missense_Mutation	SNP	A	TCGA-BP-4161-01A-02D-1386-10		71346891	119807385	18	18238											
SDAD1	55153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	76897076	76897076	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	76897076	C	T	76897076	5	4	280	1	0	0	0	0	0	0	1	0	13963	579	20	2	1657	2	SDAD1	4	76897076	Splice_Site	SNP	C	TCGA-BP-4161-01A-02D-1386-10	5550185	76897076	114257200	19	18239											
ANKRD50	57182	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	125631530	125631530	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	125631530	C	G	125631530	3	3	280	1	0	0	0	0	1	0	0	0	677	565	20	4	4164	4	ANKRD50	4	125631530	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	48734454	125631530	65522746	20	18240											
PALLD	23022	broad.mit.edu	37	4	169433483	169433483	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	C	169433483	C	C	169433483	3	2	280	1	0	0	0	0	1	0	0	0	11414	962	34	4	830	4	PALLD	4	169433483	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10	43801953	169433483	21720793	21	18241											
PCDHGB7	56099	broad.mit.edu	37	5	140797646	140797646	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	140797646	T	T	140797646	3	4	280	1	0	0	0	0	1	0	0	0	11575	710	25	2	222	2	PCDHGB7	5	140797646	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10		140797646	40117614	22	18242											
PCDHGC5	56097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140869478	140869478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	140869478	G	T	140869478	3	4	280	1	0	0	0	0	1	0	0	0	11578	1232	43	4	673	4	PCDHGC5	5	140869478	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10	71832	140869478	40045782	23	18243											
PDGFRB	5159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149505045	149505045	+	Silent	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	149505045	G	A	149505045	2	1	280	1	0	0	0	0	0	0	0	1	11669	1020	36	2		2	PDGFRB	5	149505045	Silent	SNP	G	TCGA-BP-4161-01A-02D-1386-10	8635567	149505045	31410215	24	18244	238	2									
PDGFRB	5159	broad.mit.edu;ucsc.edu	37	5	149505046	149505046	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	149505046	G	G	149505046	3	3	280	1	0	0	0	0	1	0	0	0	11669	1667	58	5	1599	5	PDGFRB	5	149505046	Missense_Mutation	SNP	T	TCGA-BP-4161-01A-02D-1386-10	1	149505046	31410214	25	18245	238	2									
MAPK9	5601	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179668101	179668101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	179668101	C	T	179668101	3	4	280	1	0	0	0	0	1	0	0	0	9294	652	23	1	369	1	MAPK9	5	179668101	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	30163055	179668101	1247159	26	18246											
NUP153	9972	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	17624932	17624932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	17624932	G	A	17624932	3	1	280	1	0	0	0	0	1	0	0	0	10762	1294	45	2	405	2	NUP153	6	17624932	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10		17624932	153490135	27	18247											
KIF13A	63971	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	17783914	17783914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	17783914	C	T	17783914	3	4	280	1	0	0	0	0	1	0	0	0	8281	594	21	2	1979	2	KIF13A	6	17783914	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	158982	17783914	153331153	28	18248											
DPCR1	135656	broad.mit.edu;hgsc.bcm.edu	37	6	30917885	30917885	+	Silent	SNP	C	C	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	30917885	C	G	30917885	2	3	280	1	0	0	0	0	0	0	0	1	4714	581	21	4		4	DPCR1	6	30917885	Silent	SNP	C	TCGA-BP-4161-01A-02D-1386-10	13133971	30917885	140197182	29	18249											
VARS	7407	broad.mit.edu	37	6	31752484	31752485	+	Frame_Shift_Del	DEL	GA	-	-	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	-	31752485	-	-	31752484	7	5	280	1	0	1	0	1	0	0	0	0	17135	1294	45	0	2519	0	VARS	6	31752484	Frame_Shift_Del	DEL	GA	TCGA-BP-4161-01A-02D-1386-10	834599	31752484	139362583	30	18250											
UBR2	23304	hgsc.bcm.edu;ucsc.edu	37	6	42626515	42626515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	42626515	G	T	42626515	3	4	280	1	0	0	0	0	1	0	0	0	16914	962	34	4	3455	4	UBR2	6	42626515	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10	10874031	42626515	128488552	31	18251											
RIMS1	22999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	73001656	73001656	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	73001656	C	G	73001656	3	3	280	1	0	0	0	0	1	0	0	0	13380	855	30	4	4022	4	RIMS1	6	73001656	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	30375141	73001656	98113411	32	18252											
MAD1L1	8379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	2255571	2255571	+	Silent	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	2255571	C	T	2255571	2	4	280	1	0	0	0	0	0	0	0	1	9154	726	26	2		2	MAD1L1	7	2255571	Silent	SNP	C	TCGA-BP-4161-01A-02D-1386-10		2255571	156883092	33	18253											
CDK13	8621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	40134281	40134281	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	-	40134281	C	-	40134281	7	5	280	1	0	1	0	1	0	0	0	0	3131	797	28	0	4295	0	CDK13	7	40134281	Frame_Shift_Del	DEL	C	TCGA-BP-4161-01A-02D-1386-10	37878710	40134281	119004382	34	18254											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82582155	82582155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	82582155	A	G	82582155	3	3	280	1	0	0	0	0	1	0	0	0	11590	420	15	3	7415	3	PCLO	7	82582155	Missense_Mutation	SNP	A	TCGA-BP-4161-01A-02D-1386-10	42447874	82582155	76556508	35	18255											
TFR2	7036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100238672	100238672	+	Silent	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	100238672	G	A	100238672	2	1	280	1	0	0	0	0	0	0	0	1	15823	1277	45	2		2	TFR2	7	100238672	Silent	SNP	G	TCGA-BP-4161-01A-02D-1386-10	17656517	100238672	58899991	36	18256											
LRRCC1	85444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	86044062	86044062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	86044062	G	T	86044062	3	4	280	1	0	0	0	0	1	0	0	0	9033	971	34	4	1880	4	LRRCC1	8	86044062	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10		86044062	60319960	37	18257											
C8orf47	203111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	99101674	99101674	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	-	99101674	A	-	99101674	7	5	280	1	0	1	0	1	0	0	0	0	2434	349	13	0	435	0	C8orf47	8	99101674	Frame_Shift_Del	DEL	A	TCGA-BP-4161-01A-02D-1386-10	13057612	99101674	47262348	38	18258											
SMARCA2	6595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	2039524	2039524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	2039524	G	A	2039524	3	1	280	1	0	0	0	0	1	0	0	0	14782	1377	48	2	424	2	SMARCA2	9	2039524	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10		2039524	139173907	39	18259											
UNC13B	10497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35310690	35310690	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	35310690	G	T	35310690	4	4	280	1	0	0	0	0	0	1	0	0	16997	1291	45	4	1022	4	UNC13B	9	35310690	Nonsense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10	33271166	35310690	105902741	40	18260											
FAM166A	401565	broad.mit.edu	37	9	140140165	140140165	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	C	140140165	C	C	140140165	3	2	280	1	0	0	0	0	1	0	0	0	5485	1551	54	3	780	3	FAM166A	9	140140165	Missense_Mutation	SNP	T	TCGA-BP-4161-01A-02D-1386-10	104829475	140140165	1073266	41	18261											
PCDH15	65217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	55568846	55568846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	55568846	G	A	55568846	3	1	280	1	0	0	0	0	1	0	0	0	11518	1319	46	2	952	2	PCDH15	10	55568846	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10		55568846	79965901	42	18262											
ANK3	288	hgsc.bcm.edu;ucsc.edu	37	10	61831858	61831858	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	-	61831858	T	-	61831858	7	5	280	1	0	1	0	1	0	0	0	0	622	1606	56	0	4693	0	ANK3	10	61831858	Frame_Shift_Del	DEL	T	TCGA-BP-4161-01A-02D-1386-10	6263012	61831858	73702889	43	18263											
PTEN	5728	broad.mit.edu	37	10	89725042	89725042	+	Splice_Site	SNP	A	G	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	89725042	G	G	89725042	5	3	280	1	0	0	0	0	0	0	1	0	12748	434	15	3	1059	3	PTEN	10	89725042	Splice_Site	SNP	A	TCGA-BP-4161-01A-02D-1386-10	27893184	89725042	45809705	44	18264											
TDRD1	56165	broad.mit.edu;ucsc.edu	37	10	115962900	115962900	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	115962900	T	T	115962900	4	4	280	1	0	0	0	0	0	1	0	0	15742	296	11	5	788	5	TDRD1	10	115962900	Nonsense_Mutation	SNP	A	TCGA-BP-4161-01A-02D-1386-10	26237858	115962900	19571847	45	18265											
ATRNL1	26033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	116880014	116880014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	116880014	C	A	116880014	3	1	280	1	0	0	0	0	1	0	0	0	1207	565	20	4	365	4	ATRNL1	10	116880014	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	917114	116880014	18654733	46	18266											
SLC2A3	6515	broad.mit.edu;hgsc.bcm.edu	37	12	8083142	8083142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	8083142	G	T	8083142	3	4	280	1	0	0	0	0	1	0	0	0	14558	1174	41	4	907	4	SLC2A3	12	8083142	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10		8083142	125768753	47	18267											
PIK3C2G	5288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	18762521	18762521	+	Silent	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	18762521	G	A	18762521	2	1	280	1	0	0	0	0	0	0	0	1	11918	991	35	2		2	PIK3C2G	12	18762521	Silent	SNP	G	TCGA-BP-4161-01A-02D-1386-10	10679379	18762521	115089374	48	18268											
SLCO1B3	28234	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21032479	21032479	+	Silent	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	21032479	G	T	21032479	2	4	280	1	0	0	0	0	0	0	0	1	14737	1045	37	4		4	SLCO1B3	12	21032479	Silent	SNP	G	TCGA-BP-4161-01A-02D-1386-10	2269958	21032479	112819416	49	18269											
COL2A1	1280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48369167	48369167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	48369167	C	A	48369167	3	1	280	1	0	0	0	0	1	0	0	0	3689	680	24	4	660	4	COL2A1	12	48369167	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	27336688	48369167	85482728	50	18270											
PRPH	5630	broad.mit.edu;ucsc.edu	37	12	49690246	49690246	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	49690246	G	G	49690246	3	3	280	1	0	0	0	0	1	0	0	0	12586	246	9	3	648	3	PRPH	12	49690246	Missense_Mutation	SNP	A	TCGA-BP-4161-01A-02D-1386-10	1321079	49690246	84161649	51	18271											
BIN2	51411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	51690950	51690950	+	Splice_Site	SNP	T	T	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	51690950	T	A	51690950	5	1	280	1	0	0	0	0	0	0	1	0	1433	1536	53	5	1120	5	BIN2	12	51690950	Splice_Site	SNP	T	TCGA-BP-4161-01A-02D-1386-10	2000704	51690950	82160945	52	18272											
MED13L	23389	broad.mit.edu;ucsc.edu	37	12	116549250	116549250	+	Silent	SNP	G	T	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	116549250	T	T	116549250	2	4	280	1	0	0	0	0	0	0	0	1	9438	1164	41	4		4	MED13L	12	116549250	Silent	SNP	G	TCGA-BP-4161-01A-02D-1386-10	64858300	116549250	17302645	53	18273											
TESC	54997	hgsc.bcm.edu;ucsc.edu	37	12	117513065	117513065	+	RNA	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	117513065	G	T	117513065	1	4	280	0	1	0	0	0	0	0	0	0	15778	1334	46	4		4	TESC	12	117513065	RNA	SNP	G	TCGA-BP-4161-01A-02D-1386-10	963815	117513065	16338830	54	18274											
CDX2	1045	broad.mit.edu	37	13	28542702	28542703	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	28542703	G	G	28542702	7	5	280	1	0	1	1	0	0	0	0	0	3185	768	27	0	511	0	CDX2	13	28542702	Frame_Shift_Ins	INS	-	TCGA-BP-4161-01A-02D-1386-10		28542702	86627176	55	18275											
ELF1	1997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	41515228	41515228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	41515228	G	A	41515228	3	1	280	1	0	0	0	0	1	0	0	0	5055	1319	46	2	782	2	ELF1	13	41515228	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10	12972526	41515228	73654650	56	18276											
MYBBP1A	10514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4442824	4442824	+	Silent	SNP	T	T	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	4442824	T	A	4442824	2	1	280	1	0	0	0	0	0	0	0	1	10015	1683	59	5		5	MYBBP1A	17	4442824	Silent	SNP	T	TCGA-BP-4161-01A-02D-1386-10		4442824	76752386	57	18277											
POLR2A	5430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7415174	7415174	+	Silent	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	7415174	G	T	7415174	2	4	280	1	0	0	0	0	0	0	0	1	12221	1364	48	4		4	POLR2A	17	7415174	Silent	SNP	G	TCGA-BP-4161-01A-02D-1386-10	2972350	7415174	73780036	58	18278											
GPR179	440435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36499492	36499492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	36499492	C	T	36499492	3	4	280	1	0	0	0	0	1	0	0	0	6681	768	27	1	6966	1	GPR179	17	36499492	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	29084318	36499492	44695718	59	18279											
MUM1	84939	hgsc.bcm.edu;ucsc.edu	37	19	1369580	1369580	+	RNA	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	1369580	C	T	1369580	1	4	280	0	1	0	0	0	0	0	0	0	9992	696	24	2		2	MUM1	19	1369580	RNA	SNP	C	TCGA-BP-4161-01A-02D-1386-10		1369580	57759403	60	18280											
FBN3	84467	broad.mit.edu;ucsc.edu	37	19	8201371	8201371	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	8201371	G	G	8201371	3	3	280	1	0	0	0	0	1	0	0	0	5711	1696	59	5	7399	5	FBN3	19	8201371	Missense_Mutation	SNP	T	TCGA-BP-4161-01A-02D-1386-10	6831791	8201371	50927612	61	18281											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8998753	8998753	+	Silent	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	8998753	G	T	8998753	2	4	280	1	0	0	0	0	0	0	0	1	9980	1219	43	4		4	MUC16	19	8998753	Silent	SNP	G	TCGA-BP-4161-01A-02D-1386-10	797382	8998753	50130230	62	18282											
WIZ	58525	broad.mit.edu	37	19	15559003	15559003	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	15559003	T	T	15559003	3	4	280	1	0	0	0	0	1	0	0	0	17387	623	22	2	2296	2	WIZ	19	15559003	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10	6560250	15559003	43569980	63	18283											
RASAL3	64926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15565475	15565475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	15565475	G	A	15565475	3	1	280	1	0	0	0	0	1	0	0	0	13078	1116	39	1	1112	1	RASAL3	19	15565475	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10	6472	15565475	43563508	64	18284											
LYPD3	27076	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	43969649	43969649	+	Silent	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	43969649	G	A	43969649	2	1	280	1	0	0	0	0	0	0	0	1	9118	1074	38	1		1	LYPD3	19	43969649	Silent	SNP	G	TCGA-BP-4161-01A-02D-1386-10	28404174	43969649	15159334	65	18285											
ZNF221	7638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44469419	44469419	+	Silent	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	44469419	C	T	44469419	2	4	280	1	0	0	0	0	0	0	0	1	17787	912	32	2		2	ZNF221	19	44469419	Silent	SNP	C	TCGA-BP-4161-01A-02D-1386-10	499770	44469419	14659564	66	18286											
ZNF285	26974	hgsc.bcm.edu;ucsc.edu	37	19	44892225	44892225	+	Missense_Mutation	SNP	T	T	G	rs114985922	byfrequency	TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	44892225	T	G	44892225	3	3	280	1	0	0	0	0	1	0	0	0	17834	1609	56	5	1594	5	ZNF285	19	44892225	Missense_Mutation	SNP	T	TCGA-BP-4161-01A-02D-1386-10	422806	44892225	14236758	67	18287											
PPP1R15A	23645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49379159	49379159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	A	49379159	G	A	49379159	3	1	280	1	0	0	0	0	1	0	0	0	12373	971	34	2	1960	2	PPP1R15A	19	49379159	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10	4486934	49379159	9749824	68	18288											
C20orf26	26074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	20243669	20243669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	20243669	C	T	20243669	3	4	280	1	0	0	0	0	1	0	0	0	2108	759	27	1	2508	1	C20orf26	20	20243669	Missense_Mutation	SNP	C	TCGA-BP-4161-01A-02D-1386-10		20243669	42781851	69	18289											
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970772	45970772	+	Silent	SNP	A	A	G	rs76021731		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	G	45970772	A	G	45970772	2	3	280	1	0	0	0	0	0	0	0	1	8516	175	7	3		3	KRTAP10-2	21	45970772	Silent	SNP	A	TCGA-BP-4161-01A-02D-1386-10		45970772	2159123	70	18290											
ADORA2A	135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24829496	24829496	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	-	24829496	A	-	24829496	7	5	280	1	0	1	0	1	0	0	0	0	327	130	5	0	126	0	ADORA2A	22	24829496	Frame_Shift_Del	DEL	A	TCGA-BP-4161-01A-02D-1386-10		24829496	26475070	71	18291											
ADRBK2	157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	26114290	26114290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	T	26114290	G	T	26114290	3	4	280	1	0	0	0	0	1	0	0	0	344	1145	40	4	1807	4	ADRBK2	22	26114290	Missense_Mutation	SNP	G	TCGA-BP-4161-01A-02D-1386-10	1284794	26114290	25190276	72	18292											
ARSE	415	broad.mit.edu	37	X	2856294	2856294	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	-	2856294	-	-	2856294	7	5	280	1	0	1	0	1	0	0	0	0	990	842	30	0	650	0	ARSE	23	2856294	Frame_Shift_Del	DEL	C	TCGA-BP-4161-01A-02D-1386-10		2856294	152414266	73	18293											
AMELX	265	broad.mit.edu	37	X	11316960	11316960	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	C	11316960	C	C	11316960	3	2	280	1	0	0	0	0	1	0	0	0	569	1696	59	3	497	3	AMELX	23	11316960	Missense_Mutation	SNP	T	TCGA-BP-4161-01A-02D-1386-10	8460666	11316960	143953600	74	18294											
MED14	9282	broad.mit.edu;hgsc.bcm.edu	37	X	40573155	40573155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4161-01A-02D-1386-10	TCGA-BP-4161-11A-01D-1251-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	1f164308-3c94-4aca-9592-64eedcabf95f	7ab9f3c3-88b7-4d39-be66-f4ea0798274b	C	40573155	T	C	40573155	3	2	280	1	0	0	0	0	1	0	0	0	9439	1841	64	3	3945	3	MED14	23	40573155	Missense_Mutation	SNP	T	TCGA-BP-4161-01A-02D-1386-10	29256195	40573155	114697405	75	18295											
VHL	7428	hgsc.bcm.edu	37	3	10183817	10183817	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4161-01A-02W-1382-10	TCGA-BP-4161-11A-01W-1244-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	13124411-f98d-4603-8022-2e0fd44ae880	63cd168a-94e8-4ee0-96ca-db4199aa6b73	T	10183817	C	T	10183817	4	4	281	1	0	0	0	0	0	1	0	0	17174	711	25	2	288	2	VHL	3	10183817	Nonsense_Mutation	SNP	C	TCGA-BP-4161-01A-02W-1382-10		10183817	187838613	1	18296											
AGRN	375790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	981443	981443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	G	981443	C	G	981443	3	3	282	1	0	0	0	0	1	0	0	0	397	507	18	4	2842	4	AGRN	1	981443	Missense_Mutation	SNP	C	TCGA-BP-4162-01A-02D-1386-10		981443	248269178	1	18297											
RAP1A	5906	hgsc.bcm.edu;ucsc.edu	37	1	112247019	112247019	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	-	112247019	G	-	112247019	7	5	282	1	0	1	0	1	0	0	0	0	13048	1348	47	0	397	0	RAP1A	1	112247019	Frame_Shift_Del	DEL	G	TCGA-BP-4162-01A-02D-1386-10	111265576	112247019	137003602	2	18298											
DCST1	149095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155014062	155014062	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	C	155014062	G	C	155014062	3	2	282	1	0	0	0	0	1	0	0	0	4304	1291	45	4	743	4	DCST1	1	155014062	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10	42767043	155014062	94236559	3	18299											
YOD1	55432	hgsc.bcm.edu;ucsc.edu	37	1	207222973	207222977	+	Frame_Shift_Del	DEL	GCAAA	GCAAA	-	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	GCAAA	GCAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	-	207222977	GCAAA	-	207222973	7	5	282	1	0	1	0	1	0	0	0	0	17500	1203	42	0	611	0	YOD1	1	207222973	Frame_Shift_Del	DEL	GCAAA	TCGA-BP-4162-01A-02D-1386-10	52208911	207222973	42027648	4	18300											
RYR2	6262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	237791209	237791209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	237791209	G	A	237791209	3	1	282	1	0	0	0	0	1	0	0	0	13782	1116	39	1	6431	1	RYR2	1	237791209	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10	30568236	237791209	11459412	5	18301											
OR2T12	127064	broad.mit.edu	37	1	248458511	248458511	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	248458511	A	A	248458511	3	1	282	1	0	0	0	0	1	0	0	0	11026	478	17	4	595	4	OR2T12	1	248458511	Missense_Mutation	SNP	C	TCGA-BP-4162-01A-02D-1386-10	10667302	248458511	792110	6	18302											
SH3BP5L	80851	broad.mit.edu	37	1	249106452	249106452	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	249106452	T	T	249106452	3	4	282	1	0	0	0	0	1	0	0	0	14261	652	23	1	356	1	SH3BP5L	1	249106452	Missense_Mutation	SNP	C	TCGA-BP-4162-01A-02D-1386-10	647941	249106452	144169	7	18303											
INHBB	3625	hgsc.bcm.edu	37	2	121107175	121107176	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	G	121107176	-	G	121107175	7	5	282	1	0	1	1	0	0	0	0	0	7749	1580	55	0	955	0	INHBB	2	121107175	Frame_Shift_Ins	INS	-	TCGA-BP-4162-01A-02D-1386-10		121107175	122092198	8	18304											
ITGA6	3655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	173354250	173354250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	173354250	C	A	173354250	3	1	282	1	0	0	0	0	1	0	0	0	7887	478	17	4	2621	4	ITGA6	2	173354250	Missense_Mutation	SNP	C	TCGA-BP-4162-01A-02D-1386-10	52247075	173354250	69845123	9	18305											
FBLN2	2199	broad.mit.edu	37	3	13612493	13612493	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	C	13612493	C	C	13612493	3	2	282	1	0	0	0	0	1	0	0	0	5706	1232	43	4		4	FBLN2	3	13612493	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10		13612493	184409937	10	18306											
USP4	7375	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49373006	49373006	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	C	49373006	A	C	49373006	3	2	282	1	0	0	0	0	1	0	0	0	17083	246	9	5	2850	5	USP4	3	49373006	Missense_Mutation	SNP	A	TCGA-BP-4162-01A-02D-1386-10	35760513	49373006	148649424	11	18307											
CDH12	1010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	21751935	21751935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	21751935	C	A	21751935	3	1	282	1	0	0	0	0	1	0	0	0	3100	826	29	4	92	4	CDH12	5	21751935	Missense_Mutation	SNP	C	TCGA-BP-4162-01A-02D-1386-10		21751935	159163325	12	18308											
ZBED3	84327	broad.mit.edu	37	5	76373057	76373058	+	In_Frame_Ins	INS	-	GCG	GCG	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	GCG	76373058	GCG	GCG	76373057	7	5	282	1	0	1	1	0	0	0	0	0	17531	304	11	0	61	0	ZBED3	5	76373057	In_Frame_Ins	INS	-	TCGA-BP-4162-01A-02D-1386-10	54621122	76373057	104542203	13	18309											
KIF3A	11127	hgsc.bcm.edu;ucsc.edu	37	5	132070046	132070062	+	Frame_Shift_Del	DEL	CCCCTCATCTCATCCAC	CCCCTCATCTCATCCAC	-	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	CCCCTCATCTCATCCAC	CCCCTCATCTCATCCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	-	132070062	CCCCTCATCTCATCCAC	-	132070046	7	5	282	1	0	1	0	1	0	0	0	0	8307	855	30	0	2032	0	KIF3A	5	132070046	Frame_Shift_Del	DEL	CCCCTCATCTCATCCAC	TCGA-BP-4162-01A-02D-1386-10	55696989	132070046	48845214	14	18310											
SLC17A1	6568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	25830753	25830753	+	Silent	SNP	T	T	C	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	C	25830753	T	C	25830753	2	2	282	1	0	0	0	0	0	0	0	1	14429	1623	56	3		3	SLC17A1	6	25830753	Silent	SNP	T	TCGA-BP-4162-01A-02D-1386-10		25830753	145284314	15	18311											
STAG3L2	442582	broad.mit.edu	37	7	74298857	74298857	+	RNA	SNP	T	C	C	rs1635764	bycluster	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	C	74298857	C	C	74298857	1	2	282	0	1	0	0	0	0	0	0	0	15257	1421	49	3		3	STAG3L2	7	74298857	RNA	SNP	T	TCGA-BP-4162-01A-02D-1386-10		74298857	84839806	16	18312											
FAM200A	221786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99145777	99145777	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	99145777	A	T	99145777	3	4	282	1	0	0	0	0	1	0	0	0	5540	333	12	5	1471	5	FAM200A	7	99145777	Missense_Mutation	SNP	A	TCGA-BP-4162-01A-02D-1386-10	24846920	99145777	59992886	17	18313											
CUX1	1523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	101923413	101923413	+	Splice_Site	SNP	G	G	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	101923413	G	T	101923413	5	4	282	1	0	0	0	0	0	0	1	0	4066	1275	44	4	5209	4	CUX1	7	101923413	Splice_Site	SNP	G	TCGA-BP-4162-01A-02D-1386-10	2777636	101923413	57215250	18	18314											
WDR86	349136	broad.mit.edu;ucsc.edu	37	7	151092874	151092874	+	Silent	SNP	G	A	A	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	151092874	A	A	151092874	2	1	282	1	0	0	0	0	0	0	0	1	17346	1277	45	2		2	WDR86	7	151092874	Silent	SNP	G	TCGA-BP-4162-01A-02D-1386-10	49169461	151092874	8045789	19	18315											
POLB	5423	hgsc.bcm.edu	37	8	42196541	42196541	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	-	42196541	T	-	42196541	7	5	282	1	0	1	0	1	0	0	0	0	12196	1609	56	0	79	0	POLB	8	42196541	Frame_Shift_Del	DEL	T	TCGA-BP-4162-01A-02D-1386-10		42196541	104167481	20	18316											
MYO3A	53904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	26377305	26377305	+	Silent	SNP	G	G	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	26377305	G	T	26377305	2	4	282	1	0	0	0	0	0	0	0	1	10083	1335	47	4		4	MYO3A	10	26377305	Silent	SNP	G	TCGA-BP-4162-01A-02D-1386-10		26377305	109157442	21	18317											
CASP7	840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	115489084	115489084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	115489084	A	T	115489084	3	4	282	1	0	0	0	0	1	0	0	0	2678	295	11	5	900	5	CASP7	10	115489084	Missense_Mutation	SNP	A	TCGA-BP-4162-01A-02D-1386-10	89111779	115489084	20045663	22	18318											
DENND5A	23258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	9225842	9225842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	9225842	G	A	9225842	3	1	282	1	0	0	0	0	1	0	0	0	4438	1319	46	2	3629	2	DENND5A	11	9225842	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10		9225842	125780674	23	18319											
OR5R1	219479	broad.mit.edu;ucsc.edu	37	11	56185258	56185258	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	G	56185258	G	G	56185258	3	3	282	1	0	0	0	0	1	0	0	0	11187	449	16	3	525	3	OR5R1	11	56185258	Missense_Mutation	SNP	A	TCGA-BP-4162-01A-02D-1386-10	46959416	56185258	78821258	24	18320											
CACNA2D4	93589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	2022187	2022187	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	G	2022187	A	G	2022187	5	3	282	1	0	0	0	0	0	0	1	0	2553	405	14	3	3129	3	CACNA2D4	12	2022187	Splice_Site	SNP	A	TCGA-BP-4162-01A-02D-1386-10		2022187	131829708	25	18321											
CASC1	55259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	25347862	25347862	+	Silent	SNP	G	G	C	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	C	25347862	G	C	25347862	2	2	282	1	0	0	0	0	0	0	0	1	2662	987	35	4		4	CASC1	12	25347862	Silent	SNP	G	TCGA-BP-4162-01A-02D-1386-10	23325675	25347862	108504033	26	18322											
RPS26	6231	broad.mit.edu;hgsc.bcm.edu	37	12	56436231	56436231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	56436231	G	A	56436231	3	1	282	1	0	0	0	0	1	0	0	0	13650	1261	44	2	32	2	RPS26	12	56436231	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10	31088369	56436231	77415664	27	18323											
C12orf51	0	broad.mit.edu;hgsc.bcm.edu	37	12	112650409	112650409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	112650409	G	T	112650409	3	4	282	1	0	0	0	0	1	0	0	0	1698	1000	35	4	5857	4	C12orf51	12	112650409	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10	56214178	112650409	21201486	28	18324											
GCN1L1	10985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	120582805	120582805	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	120582805	A	T	120582805	3	4	282	1	0	0	0	0	1	0	0	0	6306	72	3	5	3014	5	GCN1L1	12	120582805	Missense_Mutation	SNP	A	TCGA-BP-4162-01A-02D-1386-10	7932396	120582805	13269090	29	18325											
C14orf102	0	hgsc.bcm.edu;ucsc.edu	37	14	90754790	90754793	+	Frame_Shift_Del	DEL	CACT	CACT	-	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	CACT	CACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	-	90754793	CACT	-	90754790	7	5	282	1	0	1	0	1	0	0	0	0	1737	478	17	0	581	0	C14orf102	14	90754790	Frame_Shift_Del	DEL	CACT	TCGA-BP-4162-01A-02D-1386-10		90754790	16594750	30	18326											
C14orf109	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	93652729	93652729	+	Silent	SNP	C	C	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	93652729	C	T	93652729	2	4	282	1	0	0	0	0	0	0	0	1	1741	796	28	2		2	C14orf109	14	93652729	Silent	SNP	C	TCGA-BP-4162-01A-02D-1386-10	2897939	93652729	13696811	31	18327											
AHNAK2	113146	hgsc.bcm.edu	37	14	105415666	105415666	+	Missense_Mutation	SNP	G	G	A	rs150446570		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	105415666	G	A	105415666	3	1	282	1	0	0	0	0	1	0	0	0	415	1000	35	2	11269	2	AHNAK2	14	105415666	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10	11762937	105415666	1933874	32	18328											
SPRED1	161742	broad.mit.edu	37	15	38632097	38632097	+	Splice_Site	SNP	G	T	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	38632097	T	T	38632097	5	4	282	1	0	0	0	0	0	0	1	0	15104	1275	44	4	601	4	SPRED1	15	38632097	Splice_Site	SNP	G	TCGA-BP-4162-01A-02D-1386-10		38632097	63899295	33	18329											
FEM1B	10116	hgsc.bcm.edu;ucsc.edu	37	15	68582267	68582267	+	Silent	SNP	T	T	C	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	C	68582267	T	C	68582267	2	2	282	1	0	0	0	0	0	0	0	1	5817	1490	52	3		3	FEM1B	15	68582267	Silent	SNP	T	TCGA-BP-4162-01A-02D-1386-10	29950170	68582267	33949125	34	18330											
MYO18A	399687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27438794	27438794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	C	27438794	T	C	27438794	3	2	282	1	0	0	0	0	1	0	0	0	10072	1696	59	3	3586	3	MYO18A	17	27438794	Missense_Mutation	SNP	T	TCGA-BP-4162-01A-02D-1386-10		27438794	53756416	35	18331											
EFCAB5	374786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	28386632	28386632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	28386632	G	T	28386632	3	4	282	1	0	0	0	0	1	0	0	0	4940	1290	45	4	2704	4	EFCAB5	17	28386632	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10	947838	28386632	52808578	36	18332											
RDM1	201299	broad.mit.edu;hgsc.bcm.edu	37	17	34257122	34257122	+	Missense_Mutation	SNP	C	C	G	rs145918765	alternate_allele	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	G	34257122	C	G	34257122	3	3	282	1	0	0	0	0	1	0	0	0	13210	680	24	4	688	4	RDM1	17	34257122	Missense_Mutation	SNP	C	TCGA-BP-4162-01A-02D-1386-10	5870490	34257122	46938088	37	18333											
ZNF350	59348	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52469415	52469415	+	Silent	SNP	C	C	G	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	G	52469415	C	G	52469415	2	3	282	1	0	0	0	0	0	0	0	1	17875	813	29	4		4	ZNF350	19	52469415	Silent	SNP	C	TCGA-BP-4162-01A-02D-1386-10		52469415	6659568	38	18334											
ZNF528	84436	hgsc.bcm.edu;ucsc.edu	37	19	52918713	52918715	+	In_Frame_Del	DEL	ACC	ACC	-	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	ACC	ACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	-	52918715	ACC	-	52918713	7	5	282	1	0	1	0	1	0	0	0	0	17981	43	2	0	622	0	ZNF528	19	52918713	In_Frame_Del	DEL	ACC	TCGA-BP-4162-01A-02D-1386-10	449298	52918713	6210270	39	18335											
ZIM3	114026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57646742	57646742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	57646742	A	T	57646742	3	4	282	1	0	0	0	0	1	0	0	0	17697	330	12	5	459	5	ZIM3	19	57646742	Missense_Mutation	SNP	A	TCGA-BP-4162-01A-02D-1386-10	4728029	57646742	1482241	40	18336											
KIF3B	9371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30898421	30898421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	30898421	G	T	30898421	3	4	282	1	0	0	0	0	1	0	0	0	8308	1319	46	4	843	4	KIF3B	20	30898421	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10		30898421	32127099	41	18337											
MAGED2	10916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	54839919	54839919	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	G	54839919	A	G	54839919	5	3	282	1	0	0	0	0	0	0	1	0	9191	202	7	3	1241	3	MAGED2	23	54839919	Splice_Site	SNP	A	TCGA-BP-4162-01A-02D-1386-10		54839919	100430641	42	18338											
ZCCHC13	389874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	73524500	73524500	+	Silent	SNP	C	C	T	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	T	73524500	C	T	73524500	2	4	282	1	0	0	0	0	0	0	0	1	17594	776	27	1		1	ZCCHC13	23	73524500	Silent	SNP	C	TCGA-BP-4162-01A-02D-1386-10	18684581	73524500	81746060	43	18339											
TAF7L	54457	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	100524198	100524198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	100524198	G	A	100524198	3	1	282	1	0	0	0	0	1	0	0	0	15545	1087	38	1	20	1	TAF7L	23	100524198	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10	26999698	100524198	54746362	44	18340											
AVPR2	554	broad.mit.edu	37	X	153171715	153171715	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	33d9ec10-b162-4bfa-a332-1802bad586bc	56936753-6197-46ae-b994-df957a6023ab	A	153171715	A	A	153171715	3	1	282	1	0	0	0	0	1	0	0	0	1233	1116	39	1	761	1	AVPR2	23	153171715	Missense_Mutation	SNP	G	TCGA-BP-4162-01A-02D-1386-10	52647517	153171715	2098845	45	18341											
VHL	7428	hgsc.bcm.edu	37	3	10183614	10183614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4162-01A-02W-1382-10	TCGA-BP-4162-11A-01W-1244-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	c637a3a7-a6a3-4a16-88ce-c25fd22866ee	ca28ed39-29d1-4e3d-9a48-5385d4dd85c3	G	10183614	A	G	10183614	3	3	283	1	0	0	0	0	1	0	0	0	17174	275	10	3	85	3	VHL	3	10183614	Missense_Mutation	SNP	A	TCGA-BP-4162-01A-02W-1382-10		10183614	187838816	1	18342			1	35		2	2	184	N	T_A	1.182287e-05
VHL	7428	hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	A	rs5030807	bycluster	TCGA-BP-4162-01A-02W-1382-10	TCGA-BP-4162-11A-01W-1244-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	c637a3a7-a6a3-4a16-88ce-c25fd22866ee	ca28ed39-29d1-4e3d-9a48-5385d4dd85c3	A	10183797	T	A	10183797	3	1	283	1	0	0	0	0	1	0	0	0	17174	1551	54	5	268	5	VHL	3	10183797	Missense_Mutation	SNP	T	TCGA-BP-4162-01A-02W-1382-10	183	10183797	187838633	2	18343			1	35		2	2	184	N	T_A	1.182287e-05
KDM4A	9682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44154664	44154664	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	C	44154664	G	C	44154664	3	2	284	1	0	0	0	0	1	0	0	0	8135	933	33	4	1981	4	KDM4A	1	44154664	Missense_Mutation	SNP	G	TCGA-BP-4163-01A-02D-1386-10		44154664	205095957	1	18344											
BCAS2	10286	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	115123970	115123970	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	115123970	T	G	115123970	3	3	284	1	0	0	0	0	1	0	0	0	1351	1638	57	5	565	5	BCAS2	1	115123970	Missense_Mutation	SNP	T	TCGA-BP-4163-01A-02D-1386-10	70969306	115123970	134126651	2	18345											
MRPL9	65005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151732588	151732588	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	151732588	A	T	151732588	3	4	284	1	0	0	0	0	1	0	0	0	9827	449	16	5	65	5	MRPL9	1	151732588	Missense_Mutation	SNP	A	TCGA-BP-4163-01A-02D-1386-10	36608618	151732588	97518033	3	18346											
ASPM	259266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197060067	197060067	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	197060067	C	G	197060067	3	3	284	1	0	0	0	0	1	0	0	0	1056	622	22	4	908	4	ASPM	1	197060067	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10	45327479	197060067	52190554	4	18347											
WDR35	57539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	20153652	20153652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	C	20153652	T	C	20153652	3	2	284	1	0	0	0	0	1	0	0	0	17301	1609	56	3	2233	3	WDR35	2	20153652	Missense_Mutation	SNP	T	TCGA-BP-4163-01A-02D-1386-10		20153652	223045721	5	18348											
THUMPD2	80745	hgsc.bcm.edu;ucsc.edu	37	2	39993264	39993264	+	RNA	SNP	A	A	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	39993264	A	G	39993264	1	3	284	0	1	0	0	0	0	0	0	0	15895	174	6	3		3	THUMPD2	2	39993264	RNA	SNP	A	TCGA-BP-4163-01A-02D-1386-10	19839612	39993264	203206109	6	18349											
TMEM111	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10005822	10005822	+	Silent	SNP	T	T	C	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	C	10005822	T	C	10005822	2	2	284	1	0	0	0	0	0	0	0	1	16040	1606	56	3		3	TMEM111	3	10005822	Silent	SNP	T	TCGA-BP-4163-01A-02D-1386-10		10005822	188016608	7	18350											
TEX264	51368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	51708346	51708346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	51708346	T	A	51708346	3	1	284	1	0	0	0	0	1	0	0	0	15795	1580	55	5	28	5	TEX264	3	51708346	Missense_Mutation	SNP	T	TCGA-BP-4163-01A-02D-1386-10	41702524	51708346	146314084	8	18351											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52439876	52439876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	52439876	G	T	52439876	4	4	284	1	0	0	0	0	0	1	0	0	1311	1294	45	4	1385	4	BAP1	3	52439876	Nonsense_Mutation	SNP	G	TCGA-BP-4163-01A-02D-1386-10	731530	52439876	145582554	9	18352											
TOPBP1	11073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	133362056	133362056	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	133362056	A	T	133362056	3	4	284	1	0	0	0	0	1	0	0	0	16381	304	11	5	2627	5	TOPBP1	3	133362056	Missense_Mutation	SNP	A	TCGA-BP-4163-01A-02D-1386-10	80922180	133362056	64660374	10	18353											
OTOL1	131149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	161221212	161221212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	161221212	C	A	161221212	3	1	284	1	0	0	0	0	1	0	0	0	11311	507	18	4	930	4	OTOL1	3	161221212	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10	27859156	161221212	36801218	11	18354											
ATP13A4	84239	broad.mit.edu;hgsc.bcm.edu	37	3	193120483	193120483	+	Silent	SNP	A	A	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	193120483	A	G	193120483	2	3	284	1	0	0	0	0	0	0	0	1	1126	59	3	3		3	ATP13A4	3	193120483	Silent	SNP	A	TCGA-BP-4163-01A-02D-1386-10	31899271	193120483	4901947	12	18355											
THAP6	152815	hgsc.bcm.edu;ucsc.edu	37	4	76440718	76440721	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	-	76440721	AGTT	-	76440718	7	5	284	1	0	1	0	1	0	0	0	0	15860	72	3	0	58	0	THAP6	4	76440718	Frame_Shift_Del	DEL	AGTT	TCGA-BP-4163-01A-02D-1386-10		76440718	114713558	13	18356											
CENPE	1062	broad.mit.edu;ucsc.edu	37	4	104061981	104061981	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	104061981	A	A	104061981	3	1	284	1	0	0	0	0	1	0	0	0	3232	1261	44	2	2417	2	CENPE	4	104061981	Missense_Mutation	SNP	G	TCGA-BP-4163-01A-02D-1386-10	27621263	104061981	87092295	14	18357											
NIPBL	25836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	37022178	37022178	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	37022178	C	G	37022178	3	3	284	1	0	0	0	0	1	0	0	0	10435	710	25	4	5460	4	NIPBL	5	37022178	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10		37022178	143893082	15	18358											
C5orf42	65250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	37226660	37226660	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	37226660	C	G	37226660	3	3	284	1	0	0	0	0	1	0	0	0	2303	564	20	4	7720	4	C5orf42	5	37226660	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10	204482	37226660	143688600	16	18359											
PKD2L2	27039	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137228267	137228267	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	137228267	T	G	137228267	3	3	284	1	0	0	0	0	1	0	0	0	11975	1609	56	5	242	5	PKD2L2	5	137228267	Missense_Mutation	SNP	T	TCGA-BP-4163-01A-02D-1386-10	100001607	137228267	43686993	17	18360											
HLA-DQB1	3119	hgsc.bcm.edu;ucsc.edu	37	6	32629137	32629137	+	Silent	SNP	T	T	G	rs1140343	bycluster;byfrequency;by1000genomes	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	32629137	T	G	32629137	2	3	284	1	0	0	0	0	0	0	0	1	7213	1838	64	5		5	HLA-DQB1	6	32629137	Silent	SNP	T	TCGA-BP-4163-01A-02D-1386-10		32629137	138485930	18	18361											
SYTL3	94120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	159184435	159184435	+	Silent	SNP	C	C	A	rs140709967	byfrequency;alternate_allele	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	159184435	C	A	159184435	2	1	284	1	0	0	0	0	0	0	0	1	15496	755	27	4		4	SYTL3	6	159184435	Silent	SNP	C	TCGA-BP-4163-01A-02D-1386-10	126555298	159184435	11930632	19	18362											
STEAP1	26872	broad.mit.edu	37	7	89790291	89790291	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	C	89790291	C	C	89790291	3	2	284	1	0	0	0	0	1	0	0	0	15289	1841	64	3	263	3	STEAP1	7	89790291	Missense_Mutation	SNP	T	TCGA-BP-4163-01A-02D-1386-10		89790291	69348372	20	18363											
TSC22D4	81628	broad.mit.edu;ucsc.edu	37	7	100065183	100065183	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	100065183	T	T	100065183	3	4	284	1	0	0	0	0	1	0	0	0	16622	1328	46	4	225	4	TSC22D4	7	100065183	Missense_Mutation	SNP	G	TCGA-BP-4163-01A-02D-1386-10	10274892	100065183	59073480	21	18364											
LAMB4	22798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107717486	107717486	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	107717486	A	T	107717486	3	4	284	1	0	0	0	0	1	0	0	0	8620	333	12	5	3330	5	LAMB4	7	107717486	Missense_Mutation	SNP	A	TCGA-BP-4163-01A-02D-1386-10	7652303	107717486	51421177	22	18365											
SHARPIN	81858	broad.mit.edu;ucsc.edu	37	8	145154959	145154959	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	C	145154959	C	C	145154959	3	2	284	1	0	0	0	0	1	0	0	0	14280	1020	36	4	797	4	SHARPIN	8	145154959	Missense_Mutation	SNP	G	TCGA-BP-4163-01A-02D-1386-10		145154959	1209063	23	18366											
OR56A4	120793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6023936	6023936	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	6023936	C	G	6023936	3	3	284	1	0	0	0	0	1	0	0	0	11142	797	28	4	656	4	OR56A4	11	6023936	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10		6023936	128982580	24	18367											
SLC25A45	283130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65144051	65144051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	65144051	C	T	65144051	3	4	284	1	0	0	0	0	1	0	0	0	14523	855	30	2	176	2	SLC25A45	11	65144051	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10	59120115	65144051	69862465	25	18368											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92577387	92577387	+	Silent	SNP	G	G	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	92577387	G	T	92577387	2	4	284	1	0	0	0	0	0	0	0	1	5698	1277	45	4		4	FAT3	11	92577387	Silent	SNP	G	TCGA-BP-4163-01A-02D-1386-10	27433336	92577387	42429129	26	18369											
NFRKB	4798	broad.mit.edu;hgsc.bcm.edu	37	11	129754640	129754640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	129754640	C	T	129754640	3	4	284	1	0	0	0	0	1	0	0	0	10391	695	24	2	3241	2	NFRKB	11	129754640	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10	37177253	129754640	5251876	27	18370											
TENC1	23371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53448982	53448982	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	53448982	T	G	53448982	3	3	284	1	0	0	0	0	1	0	0	0	15770	1783	62	5	674	5	TENC1	12	53448982	Missense_Mutation	SNP	T	TCGA-BP-4163-01A-02D-1386-10		53448982	80402913	28	18371											
TDG	6996	hgsc.bcm.edu	37	12	104376608	104376608	+	Silent	SNP	G	G	A	rs61937629	bycluster;byfrequency	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	104376608	G	A	104376608	2	1	284	1	0	0	0	0	0	0	0	1	15737	991	35	2		2	TDG	12	104376608	Silent	SNP	G	TCGA-BP-4163-01A-02D-1386-10	50927626	104376608	29475287	29	18372											
RALGAPA1	253959	hgsc.bcm.edu	37	14	36140605	36140611	+	Frame_Shift_Del	DEL	GCTGAAG	GCTGAAG	-	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	GCTGAAG	GCTGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	-	36140611	GCTGAAG	-	36140605	7	5	284	1	0	1	0	1	0	0	0	0	13026	971	34	0	2653	0	RALGAPA1	14	36140605	Frame_Shift_Del	DEL	GCTGAAG	TCGA-BP-4163-01A-02D-1386-10		36140605	71208935	30	18373											
PSMA3	5684	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58737146	58737146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	58737146	G	A	58737146	3	1	284	1	0	0	0	0	1	0	0	0	12678	1029	36	2	635	2	PSMA3	14	58737146	Missense_Mutation	SNP	G	TCGA-BP-4163-01A-02D-1386-10	22596541	58737146	48612394	31	18374											
PCNX	22990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	71571970	71571970	+	Silent	SNP	A	A	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	71571970	A	T	71571970	2	4	284	1	0	0	0	0	0	0	0	1	11598	291	11	5		5	PCNX	14	71571970	Silent	SNP	A	TCGA-BP-4163-01A-02D-1386-10	12834824	71571970	35777570	32	18375											
IVD	3712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40707145	40707145	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	40707145	A	T	40707145	3	4	284	1	0	0	0	0	1	0	0	0	7935	275	10	5	881	5	IVD	15	40707145	Missense_Mutation	SNP	A	TCGA-BP-4163-01A-02D-1386-10		40707145	61824247	33	18376											
DNAJC17	55192	broad.mit.edu;hgsc.bcm.edu	37	15	41065992	41065992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	41065992	A	T	41065992	3	4	284	1	0	0	0	0	1	0	0	0	4638	188	7	5	197	5	DNAJC17	15	41065992	Missense_Mutation	SNP	A	TCGA-BP-4163-01A-02D-1386-10	358847	41065992	61465400	34	18377											
MAP1A	4130	broad.mit.edu	37	15	43818938	43818938	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	43818938	G	G	43818938	3	3	284	1	0	0	0	0	1	0	0	0	9234	72	3	3	5269	3	MAP1A	15	43818938	Missense_Mutation	SNP	A	TCGA-BP-4163-01A-02D-1386-10	2752946	43818938	58712454	35	18378											
RAB8B	51762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63555808	63555808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	63555808	C	T	63555808	3	4	284	1	0	0	0	0	1	0	0	0	12970	893	31	1	644	1	RAB8B	15	63555808	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10	19736870	63555808	38975584	36	18379											
LRRK1	79705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	101601457	101601457	+	Silent	SNP	G	G	A	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	101601457	G	A	101601457	2	1	284	1	0	0	0	0	0	0	0	1	9039	962	34	2		2	LRRK1	15	101601457	Silent	SNP	G	TCGA-BP-4163-01A-02D-1386-10	38045649	101601457	929935	37	18380											
MPV17L	255027	broad.mit.edu;hgsc.bcm.edu	37	16	15501819	15501819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	15501819	A	G	15501819	3	3	284	1	0	0	0	0	1	0	0	0	9753	101	4	3	455	3	MPV17L	16	15501819	Missense_Mutation	SNP	A	TCGA-BP-4163-01A-02D-1386-10		15501819	74852934	38	18381											
HEATR3	55027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	50120249	50120249	+	Silent	SNP	T	T	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	50120249	T	G	50120249	2	3	284	1	0	0	0	0	0	0	0	1	7036	1828	64	5		5	HEATR3	16	50120249	Silent	SNP	T	TCGA-BP-4163-01A-02D-1386-10	34618430	50120249	40234504	39	18382											
ZFHX3	463	hgsc.bcm.edu	37	16	72992626	72992626	+	Silent	SNP	C	C	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	72992626	C	T	72992626	2	4	284	1	0	0	0	0	0	0	0	1	17646	680	24	2		2	ZFHX3	16	72992626	Silent	SNP	C	TCGA-BP-4163-01A-02D-1386-10	22872377	72992626	17362127	40	18383											
RARA	5914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38508302	38508302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	38508302	C	A	38508302	3	1	284	1	0	0	0	0	1	0	0	0	13065	595	21	4	791	4	RARA	17	38508302	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10		38508302	42686908	41	18384											
KRT15	3866	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39673185	39673185	+	Missense_Mutation	SNP	C	C	T	rs138271368		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	39673185	C	T	39673185	3	4	284	1	0	0	0	0	1	0	0	0	8459	536	19	1	781	1	KRT15	17	39673185	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10	1164883	39673185	41522025	42	18385											
MLX	6945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40721610	40721610	+	Silent	SNP	A	A	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	40721610	A	G	40721610	2	3	284	1	0	0	0	0	0	0	0	1	9642	349	13	3		3	MLX	17	40721610	Silent	SNP	A	TCGA-BP-4163-01A-02D-1386-10	1048425	40721610	40473600	43	18386											
CCDC47	57003	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61829787	61829787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	61829787	G	A	61829787	3	1	284	1	0	0	0	0	1	0	0	0	2820	1203	42	2	367	2	CCDC47	17	61829787	Missense_Mutation	SNP	G	TCGA-BP-4163-01A-02D-1386-10	21108177	61829787	19365423	44	18387											
MRPS7	51081	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73258639	73258639	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	C	73258639	G	C	73258639	3	2	284	1	0	0	0	0	1	0	0	0	9855	1175	41	4	151	4	MRPS7	17	73258639	Missense_Mutation	SNP	G	TCGA-BP-4163-01A-02D-1386-10	11428852	73258639	7936571	45	18388											
DNAH17	8632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76496393	76496393	+	Silent	SNP	G	G	A	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	A	76496393	G	A	76496393	2	1	284	1	0	0	0	0	0	0	0	1	4603	1020	36	2		2	DNAH17	17	76496393	Silent	SNP	G	TCGA-BP-4163-01A-02D-1386-10	3237754	76496393	4698817	46	18389											
IFI30	10437	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18286140	18286140	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	C	18286140	G	C	18286140	3	2	284	1	0	0	0	0	1	0	0	0	7522	1000	35	4	345	4	IFI30	19	18286140	Missense_Mutation	SNP	G	TCGA-BP-4163-01A-02D-1386-10		18286140	40842843	47	18390											
SULT2B1	6820	broad.mit.edu;ucsc.edu	37	19	49096055	49096055	+	Silent	SNP	C	G	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	49096055	G	G	49096055	2	3	284	1	0	0	0	0	0	0	0	1	15394	668	24	4		4	SULT2B1	19	49096055	Silent	SNP	C	TCGA-BP-4163-01A-02D-1386-10	30809915	49096055	10032928	48	18391											
ZIK1	284307	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58101848	58101848	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	C	58101848	A	C	58101848	3	2	284	1	0	0	0	0	1	0	0	0	17695	40	2	5	683	5	ZIK1	19	58101848	Missense_Mutation	SNP	A	TCGA-BP-4163-01A-02D-1386-10	9005793	58101848	1027135	49	18392											
TH1L	51497	hgsc.bcm.edu;ucsc.edu	37	20	57567073	57567076	+	Frame_Shift_Del	DEL	TAGG	TAGG	-	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	TAGG	TAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	-	57567076	TAGG	-	57567073	7	5	284	1	0	1	0	1	0	0	0	0	15851	1742	61	0	1292	0	TH1L	20	57567073	Frame_Shift_Del	DEL	TAGG	TCGA-BP-4163-01A-02D-1386-10		57567073	5458447	50	18393											
C22orf30	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	32108234	32108234	+	Missense_Mutation	SNP	C	C	T	rs143043548	bycluster;byfrequency;by1000genomes	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	32108234	C	T	32108234	3	4	284	1	0	0	0	0	1	0	0	0	2144	652	23	1	888	1	C22orf30	22	32108234	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02D-1386-10		32108234	19196332	51	18394											
PHKA1	5255	broad.mit.edu	37	X	71933736	71933736	+	Translation_Start_Site	SNP	C	T	T	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	T	71933736	T	T	71933736	1	4	284	1	0	0	0	0	0	0	0	0	11850	551	19	1		1	PHKA1	23	71933736	Translation_Start_Site	SNP	C	TCGA-BP-4163-01A-02D-1386-10		71933736	83336824	52	18395											
PLS3	5358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	114864223	114864223	+	Silent	SNP	A	A	G	novel		TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c16047c-68f3-4023-bc90-6d54cad76b07	96e16b66-2582-47e7-a107-858bf7cbf242	G	114864223	A	G	114864223	2	3	284	1	0	0	0	0	0	0	0	1	12115	117	5	3		3	PLS3	23	114864223	Silent	SNP	A	TCGA-BP-4163-01A-02D-1386-10	42930487	114864223	40406337	53	18396											
CDKN2A	1029	hgsc.bcm.edu	37	9	21970901	21970901	+	Missense_Mutation	SNP	C	C	T	rs45476696	bycluster	TCGA-BP-4163-01A-02W-1382-10	TCGA-BP-4163-11A-01W-1244-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	03533768-49b2-4a13-bf8a-cddce7e8aa43	0c0c2e5a-75e4-4968-8e2a-3a6da1cabcc6	T	21970901	C	T	21970901	3	4	285	1	0	0	0	0	1	0	0	0	3163	695	24	2	21	2	CDKN2A	9	21970901	Missense_Mutation	SNP	C	TCGA-BP-4163-01A-02W-1382-10		21970901	119242530	1	18397											
S100PBP	64766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33292267	33292267	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	G	33292267	T	G	33292267	3	3	286	1	0	0	0	0	1	0	0	0	13804	1461	51	5	569	5	S100PBP	1	33292267	Missense_Mutation	SNP	T	TCGA-BP-4164-01A-02D-1386-10		33292267	215958354	1	18398											
KIAA0754	643314	hgsc.bcm.edu	37	1	39879397	39879435	+	In_Frame_Del	DEL	GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC	GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC	-	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC	GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	-	39879435	GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC	-	39879397	7	5	286	1	0	1	0	1	0	0	0	0	8199	943	33	0	3462	0	KIAA0754	1	39879397	In_Frame_Del	DEL	GAGGAATCCGCCTCCGCAGCTGTTGCAGTGCCCACCCCC	TCGA-BP-4164-01A-02D-1386-10	6587130	39879397	209371224	2	18399											
ECHDC2	55268	broad.mit.edu;hgsc.bcm.edu	37	1	53387308	53387308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	53387308	G	T	53387308	3	4	286	1	0	0	0	0	1	0	0	0	4896	1232	43	4	783	4	ECHDC2	1	53387308	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	13507911	53387308	195863313	3	18400											
LRRC8B	23507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	90049487	90049487	+	Silent	SNP	T	T	C	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	C	90049487	T	C	90049487	2	2	286	1	0	0	0	0	0	0	0	1	9029	1828	64	3		3	LRRC8B	1	90049487	Silent	SNP	T	TCGA-BP-4164-01A-02D-1386-10	36662179	90049487	159201134	4	18401											
KCND3	3752	broad.mit.edu	37	1	112524688	112524688	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	112524688	A	A	112524688	3	1	286	1	0	0	0	0	1	0	0	0	8027	1087	38	1	1334	1	KCND3	1	112524688	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	22475201	112524688	136725933	5	18402											
C1orf116	79098	broad.mit.edu;ucsc.edu	37	1	207200938	207200938	+	Silent	SNP	G	C	C	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	C	207200938	C	C	207200938	2	2	286	1	0	0	0	0	0	0	0	1	1991	1103	39	4		4	C1orf116	1	207200938	Silent	SNP	G	TCGA-BP-4164-01A-02D-1386-10	94676250	207200938	42049683	6	18403											
TP53BP2	7159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223983623	223983623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	223983623	G	A	223983623	3	1	286	1	0	0	0	0	1	0	0	0	16396	1000	35	2	810	2	TP53BP2	1	223983623	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	16782685	223983623	25266998	7	18404											
SUCLG1	8802	broad.mit.edu;ucsc.edu	37	2	84652703	84652703	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	C	84652703	C	C	84652703	3	2	286	1	0	0	0	0	1	0	0	0	15376	275	10	5	198	5	SUCLG1	2	84652703	Missense_Mutation	SNP	A	TCGA-BP-4164-01A-02D-1386-10		84652703	158546670	8	18405											
GALNT13	114805	broad.mit.edu;ucsc.edu	37	2	155115568	155115568	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	155115568	T	T	155115568	3	4	286	1	0	0	0	0	1	0	0	0	6218	1290	45	4	914	4	GALNT13	2	155115568	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	70462865	155115568	88083805	9	18406											
CD28	940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	204591400	204591400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	204591400	G	A	204591400	3	1	286	1	0	0	0	0	1	0	0	0	2995	1058	37	1	103	1	CD28	2	204591400	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	49475832	204591400	38607973	10	18407											
KIAA1486	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	226378271	226378271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	226378271	C	T	226378271	3	4	286	1	0	0	0	0	1	0	0	0	8244	527	19	1	412	1	KIAA1486	2	226378271	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10	21786871	226378271	16821102	11	18408											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10191532	10191532	+	Nonsense_Mutation	SNP	C	C	A	rs5030835	alternate_allele	TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	10191532	C	A	10191532	4	1	286	1	0	0	0	0	0	1	0	0	17174	489	17	4	535	4	VHL	3	10191532	Nonsense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10		10191532	187830898	12	18409											
LTF	4057	broad.mit.edu	37	3	46477692	46477692	+	Silent	SNP	C	T	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	46477692	T	T	46477692	2	4	286	1	0	0	0	0	0	0	0	1	9086	854	30	2		2	LTF	3	46477692	Silent	SNP	C	TCGA-BP-4164-01A-02D-1386-10	36286160	46477692	151544738	13	18410											
DOCK3	1795	broad.mit.edu;hgsc.bcm.edu	37	3	51246204	51246204	+	Splice_Site	SNP	G	G	C	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	C	51246204	G	C	51246204	5	2	286	1	0	0	0	0	0	0	1	0	4690	1014	35	4	1087	4	DOCK3	3	51246204	Splice_Site	SNP	G	TCGA-BP-4164-01A-02D-1386-10	4768512	51246204	146776226	14	18411											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52584626	52584626	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	52584626	G	A	52584626	4	1	286	1	0	0	0	0	0	1	0	0	11498	1328	46	2	369	2	PBRM1	3	52584626	Nonsense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	1338422	52584626	145437804	15	18412											
MUC4	4585	hgsc.bcm.edu	37	3	195506487	195506534	+	In_Frame_Del	DEL	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT	-	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	-	195506534	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT	-	195506487	7	5	286	1	0	1	0	1	0	0	0	0	9985	1103	39	0		0	MUC4	3	195506487	In_Frame_Del	DEL	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT	TCGA-BP-4164-01A-02D-1386-10	142921861	195506487	2515943	16	18413			1	36		4	4	5507	N	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT_G_A	1.722577e-07
MUC4	4585	broad.mit.edu	37	3	195507717	195507717	+	Silent	SNP	G	T	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	195507717	T	T	195507717	2	4	286	1	0	0	0	0	0	0	0	1	9985	1335	47	4		4	MUC4	3	195507717	Silent	SNP	G	TCGA-BP-4164-01A-02D-1386-10	1230	195507717	2514713	17	18414			1	36		4	4	5507	N	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT_G_A	1.722577e-07
MUC4	4585	broad.mit.edu	37	3	195508500	195508500	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	C	195508500	C	C	195508500	3	2	286	1	0	0	0	0	1	0	0	0	9985	1136	40	4		4	MUC4	3	195508500	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	783	195508500	2513930	18	18415			1	36		4	4	5507	N	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT_G_A	1.722577e-07
MUC4	4585	hgsc.bcm.edu	37	3	195511993	195511993	+	Missense_Mutation	SNP	A	A	G	rs3107749		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	G	195511993	A	G	195511993	3	3	286	1	0	0	0	0	1	0	0	0	9985	391	14	3		3	MUC4	3	195511993	Missense_Mutation	SNP	A	TCGA-BP-4164-01A-02D-1386-10	3493	195511993	2510437	19	18416			1	36		4	4	5507	N	GGTGACAGGAAGGGGGGTGGCGTGACCTGTGGATGCTGAGGAACGGCT_G_A	1.722577e-07
ENAM	10117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71495256	71495256	+	Silent	SNP	T	T	G	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	G	71495256	T	G	71495256	2	3	286	1	0	0	0	0	0	0	0	1	5114	1509	53	5		5	ENAM	4	71495256	Silent	SNP	T	TCGA-BP-4164-01A-02D-1386-10		71495256	119659020	20	18417											
EXOSC9	5393	broad.mit.edu;hgsc.bcm.edu	37	4	122728760	122728760	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	122728760	T	A	122728760	3	1	286	1	0	0	0	0	1	0	0	0	5323	1809	63	5	610	5	EXOSC9	4	122728760	Missense_Mutation	SNP	T	TCGA-BP-4164-01A-02D-1386-10	51233504	122728760	68425516	21	18418											
HLA-C	3107	hgsc.bcm.edu	37	6	31238179	31238179	+	Silent	SNP	C	C	T	rs41562012	byfrequency	TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	31238179	C	T	31238179	2	4	286	1	0	0	0	0	0	0	0	1	7204	710	25	2		2	HLA-C	6	31238179	Silent	SNP	C	TCGA-BP-4164-01A-02D-1386-10		31238179	139876888	22	18419											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56401585	56401585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	C	56401585	T	C	56401585	3	2	286	1	0	0	0	0	1	0	0	0	4785	1812	63	3	6790	3	DST	6	56401585	Missense_Mutation	SNP	T	TCGA-BP-4164-01A-02D-1386-10	25163406	56401585	114713482	23	18420											
AUTS2	26053	broad.mit.edu	37	7	70255256	70255256	+	Silent	SNP	C	T	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	70255256	T	T	70255256	2	4	286	1	0	0	0	0	0	0	0	1	1225	610	22	2		2	AUTS2	7	70255256	Silent	SNP	C	TCGA-BP-4164-01A-02D-1386-10		70255256	88883407	24	18421											
CACNA2D1	781	broad.mit.edu	37	7	81598283	81598283	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	81598283	T	T	81598283	3	4	286	1	0	0	0	0	1	0	0	0	2550	855	30	2	1004	2	CACNA2D1	7	81598283	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10	11343027	81598283	77540380	25	18422											
COG5	10466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	106888896	106888896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	106888896	C	T	106888896	3	4	286	1	0	0	0	0	1	0	0	0	3663	478	17	2	719	2	COG5	7	106888896	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10	25290613	106888896	52249767	26	18423											
MLL3	58508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151860719	151860719	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	151860719	G	A	151860719	4	1	286	1	0	0	0	0	0	1	0	0	9629	1328	46	2	4860	2	MLL3	7	151860719	Nonsense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	44971823	151860719	7277944	27	18424											
PKHD1L1	93035	broad.mit.edu;ucsc.edu	37	8	110432841	110432841	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	110432841	A	A	110432841	3	1	286	1	0	0	0	0	1	0	0	0	11979	1290	45	2	2709	2	PKHD1L1	8	110432841	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10		110432841	35931181	28	18425											
SNTB1	6641	broad.mit.edu;hgsc.bcm.edu	37	8	121823811	121823811	+	Silent	SNP	G	G	C	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	C	121823811	G	C	121823811	2	2	286	1	0	0	0	0	0	0	0	1	14885	1161	41	4		4	SNTB1	8	121823811	Silent	SNP	G	TCGA-BP-4164-01A-02D-1386-10	11390970	121823811	24540211	29	18426											
CACNA1B	774	broad.mit.edu	37	9	140918171	140918185	+	In_Frame_Del	DEL	GGAGAAGGAGACCAC	-	-	rs145816559	bycluster;by1000genomes	TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	GGAGAAGGAGACCAC	GGAGAAGGAGACCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	-	140918185	-	-	140918171	7	5	286	1	0	1	0	1	0	0	0	0	2541	1335	47	0	3050	0	CACNA1B	9	140918171	In_Frame_Del	DEL	GGAGAAGGAGACCAC	TCGA-BP-4164-01A-02D-1386-10		140918171	295260	30	18427											
MMP21	118856	broad.mit.edu;hgsc.bcm.edu	37	10	127461203	127461203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	127461203	C	T	127461203	3	4	286	1	0	0	0	0	1	0	0	0	9667	826	29	2	915	2	MMP21	10	127461203	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10		127461203	8073544	31	18428											
OR52I2	143502	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4608985	4608985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	4608985	C	T	4608985	3	4	286	1	0	0	0	0	1	0	0	0	11128	623	22	2	945	2	OR52I2	11	4608985	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10		4608985	130397531	32	18429											
RBM14	10432	hgsc.bcm.edu	37	11	66392880	66392880	+	Silent	SNP	C	C	T	rs11550057	bycluster;byfrequency;by1000genomes	TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	66392880	C	T	66392880	2	4	286	1	0	0	0	0	0	0	0	1	13128	610	22	2		2	RBM14	11	66392880	Silent	SNP	C	TCGA-BP-4164-01A-02D-1386-10	61783895	66392880	68613636	33	18430											
DDI1	414301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	103908556	103908556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	103908556	C	T	103908556	3	4	286	1	0	0	0	0	1	0	0	0	4330	643	23	1	1008	1	DDI1	11	103908556	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10	37515676	103908556	31097960	34	18431											
OR4D5	219875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123810587	123810587	+	Silent	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	123810587	C	T	123810587	2	4	286	1	0	0	0	0	0	0	0	1	11064	697	25	2		2	OR4D5	11	123810587	Silent	SNP	C	TCGA-BP-4164-01A-02D-1386-10	19902031	123810587	11195929	35	18432											
FAM19A2	338811	broad.mit.edu;ucsc.edu	37	12	62148719	62148719	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	62148719	A	A	62148719	3	1	286	1	0	0	0	0	1	0	0	0	5536	565	20	4	214	4	FAM19A2	12	62148719	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10		62148719	71703176	36	18433											
POSTN	10631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	38162097	38162097	+	Silent	SNP	G	G	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	38162097	G	A	38162097	2	1	286	1	0	0	0	0	0	0	0	1	12266	1136	40	1		1	POSTN	13	38162097	Silent	SNP	G	TCGA-BP-4164-01A-02D-1386-10		38162097	77007781	37	18434											
EFS	10278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23826852	23826852	+	Silent	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	23826852	C	T	23826852	2	4	286	1	0	0	0	0	0	0	0	1	4961	610	22	2		2	EFS	14	23826852	Silent	SNP	C	TCGA-BP-4164-01A-02D-1386-10		23826852	83522688	38	18435											
NYNRIN	57523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24884470	24884470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	24884470	C	T	24884470	3	4	286	1	0	0	0	0	1	0	0	0	10803	536	19	1	3545	1	NYNRIN	14	24884470	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10	1057618	24884470	82465070	39	18436											
DIO2	1734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	80669284	80669284	+	Silent	SNP	A	A	G	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	G	80669284	A	G	80669284	2	3	286	1	0	0	0	0	0	0	0	1	4527	330	12	3		3	DIO2	14	80669284	Silent	SNP	A	TCGA-BP-4164-01A-02D-1386-10	55784814	80669284	26680256	40	18437											
SPTBN5	51332	broad.mit.edu;hgsc.bcm.edu	37	15	42150817	42150817	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	C	42150817	G	C	42150817	3	2	286	1	0	0	0	0	1	0	0	0	15134	1386	48	4	2895	4	SPTBN5	15	42150817	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10		42150817	60380575	41	18438											
USP7	7874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	9012898	9012898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	G	9012898	T	G	9012898	3	3	286	1	0	0	0	0	1	0	0	0	17100	1580	55	5	2702	5	USP7	16	9012898	Missense_Mutation	SNP	T	TCGA-BP-4164-01A-02D-1386-10		9012898	81341855	42	18439											
MYH1	4619	broad.mit.edu;hgsc.bcm.edu	37	17	10419922	10419922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	10419922	G	A	10419922	3	1	286	1	0	0	0	0	1	0	0	0	10036	971	34	2	5933	2	MYH1	17	10419922	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10		10419922	70775288	43	18440											
DHX8	1659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41582097	41582097	+	Silent	SNP	G	G	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	41582097	G	T	41582097	2	4	286	1	0	0	0	0	0	0	0	1	4517	1219	43	4		4	DHX8	17	41582097	Silent	SNP	G	TCGA-BP-4164-01A-02D-1386-10	31162175	41582097	39613113	44	18441											
OTOP2	92736	broad.mit.edu;hgsc.bcm.edu	37	17	72920812	72920812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	G	72920812	C	G	72920812	3	3	286	1	0	0	0	0	1	0	0	0	11313	652	23	4	87	4	OTOP2	17	72920812	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10	31338715	72920812	8274398	45	18442											
S1PR4	8698	hgsc.bcm.edu	37	19	3179874	3179874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	3179874	C	T	3179874	3	4	286	1	0	0	0	0	1	0	0	0	13809	884	31	1	1086	1	S1PR4	19	3179874	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10		3179874	55949109	46	18443											
SCAF1	58506	hgsc.bcm.edu	37	19	50154294	50154295	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	C	50154295	-	C	50154294	7	5	286	1	0	1	1	0	0	0	0	0	13881	146	6	0	670	0	SCAF1	19	50154294	Frame_Shift_Ins	INS	-	TCGA-BP-4164-01A-02D-1386-10	46974420	50154294	8974689	47	18444											
DEFB115	245929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	29847316	29847316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	G	29847316	A	G	29847316	3	3	286	1	0	0	0	0	1	0	0	0	4406	131	5	3	154	3	DEFB115	20	29847316	Missense_Mutation	SNP	A	TCGA-BP-4164-01A-02D-1386-10		29847316	33178204	48	18445											
RPS21	6227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	60963416	60963419	+	Frame_Shift_Del	DEL	TCAA	TCAA	-	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	TCAA	TCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	-	60963419	TCAA	-	60963416	7	5	286	1	0	1	0	1	0	0	0	0	13646	1551	54	0	252	0	RPS21	20	60963416	Frame_Shift_Del	DEL	TCAA	TCGA-BP-4164-01A-02D-1386-10	31116100	60963416	2062104	49	18446											
DIP2A	23181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47969770	47969770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	47969770	G	A	47969770	3	1	286	1	0	0	0	0	1	0	0	0	4529	971	34	2	2744	2	DIP2A	21	47969770	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10		47969770	160125	50	18447											
RIMBP3	85376	hgsc.bcm.edu	37	22	20460113	20460115	+	In_Frame_Del	DEL	CCG	CCG	-	rs77846076	alternate_allele	TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	CCG	CCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	-	20460115	CCG	-	20460113	7	5	286	1	0	1	0	1	0	0	0	0	13377	864	30	0	3734	0	RIMBP3	22	20460113	In_Frame_Del	DEL	CCG	TCGA-BP-4164-01A-02D-1386-10		20460113	30844453	51	18448											
TRIOBP	11078	hgsc.bcm.edu;ucsc.edu	37	22	38109337	38109337	+	Silent	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	38109337	C	T	38109337	2	4	286	1	0	0	0	0	0	0	0	1	16565	796	28	2		2	TRIOBP	22	38109337	Silent	SNP	C	TCGA-BP-4164-01A-02D-1386-10	17649224	38109337	13195229	52	18449											
FAM47A	158724	broad.mit.edu	37	X	34148877	34148877	+	Missense_Mutation	SNP	C	G	G	rs5973088	byfrequency;by1000genomes	TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	G	34148877	G	G	34148877	3	3	286	1	0	0	0	0	1	0	0	0	5576	864	30	4	860	4	FAM47A	23	34148877	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10		34148877	121121683	53	18450											
PHF16	9767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	46887437	46887437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	46887437	C	T	46887437	3	4	286	1	0	0	0	0	1	0	0	0	11834	643	23	1	637	1	PHF16	23	46887437	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10	12738560	46887437	108383123	54	18451											
TGIF2LX	90316	broad.mit.edu;hgsc.bcm.edu	37	X	89177557	89177557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	89177557	C	A	89177557	3	1	286	1	0	0	0	0	1	0	0	0	15839	623	22	4	475	4	TGIF2LX	23	89177557	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02D-1386-10	42290120	89177557	66093003	55	18452											
TBC1D8B	54885	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	106093257	106093257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	A	106093257	G	A	106093257	3	1	286	1	0	0	0	0	1	0	0	0	15638	1319	46	2	1952	2	TBC1D8B	23	106093257	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	16915700	106093257	49177303	56	18453											
TAZ	6901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153649068	153649068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4164-01A-02D-1386-10	TCGA-BP-4164-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feb8c145-040a-40c0-96f6-a2b389073dd9	8eb5b726-ce04-4244-a453-0dfa12704f79	T	153649068	G	T	153649068	3	4	286	1	0	0	0	0	1	0	0	0	15608	1020	36	4	809	4	TAZ	23	153649068	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02D-1386-10	47555811	153649068	1621492	57	18454											
VHL	7428	hgsc.bcm.edu	37	3	10183646	10183646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4164-01A-02W-1382-10	TCGA-BP-4164-11A-01W-1244-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	94a19895-3cda-423b-a794-6944be76cc68	61b19171-22fd-4ca7-ba5b-fc15b0003fd2	A	10183646	G	A	10183646	3	1	287	1	0	0	0	0	1	0	0	0	17174	1116	39	1	117	1	VHL	3	10183646	Missense_Mutation	SNP	G	TCGA-BP-4164-01A-02W-1382-10		10183646	187838784	1	18455	239	4									
VHL	7428	hgsc.bcm.edu	37	3	10183653	10183653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4164-01A-02W-1382-10	TCGA-BP-4164-11A-01W-1244-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	94a19895-3cda-423b-a794-6944be76cc68	61b19171-22fd-4ca7-ba5b-fc15b0003fd2	G	10183653	A	G	10183653	3	3	287	1	0	0	0	0	1	0	0	0	17174	246	9	3	124	3	VHL	3	10183653	Missense_Mutation	SNP	A	TCGA-BP-4164-01A-02W-1382-10	7	10183653	187838777	2	18456	239	4									
VHL	7428	hgsc.bcm.edu	37	3	10183659	10183659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02W-1382-10	TCGA-BP-4164-11A-01W-1244-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	94a19895-3cda-423b-a794-6944be76cc68	61b19171-22fd-4ca7-ba5b-fc15b0003fd2	T	10183659	C	T	10183659	3	4	287	1	0	0	0	0	1	0	0	0	17174	855	30	2	130	2	VHL	3	10183659	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02W-1382-10	6	10183659	187838771	3	18457	239	4									
VHL	7428	hgsc.bcm.edu	37	3	10183665	10183665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4164-01A-02W-1382-10	TCGA-BP-4164-11A-01W-1244-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	94a19895-3cda-423b-a794-6944be76cc68	61b19171-22fd-4ca7-ba5b-fc15b0003fd2	T	10183665	C	T	10183665	3	4	287	1	0	0	0	0	1	0	0	0	17174	652	23	1	136	1	VHL	3	10183665	Missense_Mutation	SNP	C	TCGA-BP-4164-01A-02W-1382-10	6	10183665	187838765	4	18458	239	4									
EXOSC10	5394	hgsc.bcm.edu	37	1	11159823	11159823	+	Silent	SNP	T	T	A	rs12133922	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	11159823	T	A	11159823	2	1	288	1	0	0	0	0	0	0	0	1	5316	1538	54	5		5	EXOSC10	1	11159823	Silent	SNP	T	TCGA-BP-4165-01A-02D-1366-10		11159823	238090798	1	18459											
PRAMEF10	343071	hgsc.bcm.edu	37	1	12955492	12955492	+	Missense_Mutation	SNP	T	T	G	rs2743620	bycluster	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	12955492	T	G	12955492	3	3	288	1	0	0	0	0	1	0	0	0	12436	1580	55	5	1249	5	PRAMEF10	1	12955492	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	1795669	12955492	236295129	2	18460											
KIAA0754	643314	hgsc.bcm.edu;ucsc.edu	37	1	39876896	39876896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	39876896	A	G	39876896	3	3	288	1	0	0	0	0	1	0	0	0	8199	72	3	3	961	3	KIAA0754	1	39876896	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	26921404	39876896	209373725	3	18461											
KIAA0467	0	hgsc.bcm.edu	37	1	43907706	43907706	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	43907706	C	G	43907706	3	3	288	1	0	0	0	0	1	0	0	0	8185	681	24	4	5235	4	KIAA0467	1	43907706	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	4030810	43907706	205342915	4	18462											
CYP4B1	1580	hgsc.bcm.edu;ucsc.edu	37	1	47284326	47284326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	47284326	C	T	47284326	3	4	288	1	0	0	0	0	1	0	0	0	4187	739	26	2	1425	2	CYP4B1	1	47284326	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	3376620	47284326	201966295	5	18463											
CDCP2	200008	hgsc.bcm.edu	37	1	54605320	54605320	+	Missense_Mutation	SNP	G	G	C	rs75306471	bycluster	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	54605320	G	C	54605320	3	2	288	1	0	0	0	0	1	0	0	0	3096	1232	43	4	130	4	CDCP2	1	54605320	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	7320994	54605320	194645301	6	18464											
C8B	732	hgsc.bcm.edu;ucsc.edu	37	1	57395209	57395209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	57395209	C	A	57395209	3	1	288	1	0	0	0	0	1	0	0	0	2419	856	30	4	135	4	C8B	1	57395209	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	2789889	57395209	191855412	7	18465											
ALG14	199857	hgsc.bcm.edu	37	1	95538419	95538419	+	Silent	SNP	T	T	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	95538419	T	A	95538419	2	1	288	1	0	0	0	0	0	0	0	1	516	1538	54	5		5	ALG14	1	95538419	Silent	SNP	T	TCGA-BP-4165-01A-02D-1366-10	38143210	95538419	153712202	8	18466											
RBM15	64783	hgsc.bcm.edu	37	1	110882645	110882645	+	Silent	SNP	T	T	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	110882645	T	C	110882645	2	2	288	1	0	0	0	0	0	0	0	1	13129	1432	50	3		3	RBM15	1	110882645	Silent	SNP	T	TCGA-BP-4165-01A-02D-1366-10	15344226	110882645	138367976	9	18467											
PDE4DIP	9659	hgsc.bcm.edu	37	1	144871742	144871742	+	Silent	SNP	A	A	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	144871742	A	T	144871742	2	4	288	1	0	0	0	0	0	0	0	1	11650	175	7	5		5	PDE4DIP	1	144871742	Silent	SNP	A	TCGA-BP-4165-01A-02D-1366-10	33989097	144871742	104378879	10	18468											
SPRR2A	6700	hgsc.bcm.edu;ucsc.edu	37	1	153029010	153029010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	153029010	G	A	153029010	3	1	288	1	0	0	0	0	1	0	0	0	15109	1174	41	2	20	2	SPRR2A	1	153029010	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	8157268	153029010	96221611	11	18469											
OR6N1	128372	hgsc.bcm.edu;ucsc.edu	37	1	158735945	158735945	+	Silent	SNP	G	G	A	rs138618527	byfrequency	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	158735945	G	A	158735945	2	1	288	1	0	0	0	0	0	0	0	1	11213	1136	40	1		1	OR6N1	1	158735945	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10	5706935	158735945	90514676	12	18470											
C1orf110	339512	hgsc.bcm.edu	37	1	162829286	162829286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	162829286	T	C	162829286	3	2	288	1	0	0	0	0	1	0	0	0	1985	1550	54	3	769	3	C1orf110	1	162829286	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	4093341	162829286	86421335	13	18471											
ZBTB37	84614	hgsc.bcm.edu	37	1	173839525	173839525	+	Silent	SNP	C	C	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	173839525	C	G	173839525	2	3	288	1	0	0	0	0	0	0	0	1	17550	610	22	4		4	ZBTB37	1	173839525	Silent	SNP	C	TCGA-BP-4165-01A-02D-1366-10	11010239	173839525	75411096	14	18472											
ZP4	57829	hgsc.bcm.edu	37	1	238053368	238053368	+	Missense_Mutation	SNP	T	T	C	rs183324278	by1000genomes	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	238053368	T	C	238053368	3	2	288	1	0	0	0	0	1	0	0	0	18230	1406	49	3	1382	3	ZP4	1	238053368	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	64213843	238053368	11197253	15	18473											
GCKR	2646	hgsc.bcm.edu	37	2	27730176	27730176	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	27730176	C	T	27730176	4	4	288	1	0	0	0	0	0	1	0	0	6301	595	21	2	1191	2	GCKR	2	27730176	Nonsense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10		27730176	215469197	16	18474											
SLC3A1	6519	hgsc.bcm.edu	37	2	44508564	44508564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	44508564	A	T	44508564	3	4	288	1	0	0	0	0	1	0	0	0	14639	304	11	5	659	5	SLC3A1	2	44508564	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	16778388	44508564	198690809	17	18475											
USP34	9736	hgsc.bcm.edu;ucsc.edu	37	2	61454297	61454297	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	61454297	A	C	61454297	3	2	288	1	0	0	0	0	1	0	0	0	17077	446	16	5	3216	5	USP34	2	61454297	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	16945733	61454297	181745076	18	18476											
STARD7	56910	hgsc.bcm.edu;ucsc.edu	37	2	96860708	96860708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	96860708	G	T	96860708	3	4	288	1	0	0	0	0	1	0	0	0	15274	933	33	4	599	4	STARD7	2	96860708	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	35406411	96860708	146338665	19	18477											
PID1	55022	hgsc.bcm.edu;ucsc.edu	37	2	229890657	229890657	+	Silent	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	229890657	G	T	229890657	2	4	288	1	0	0	0	0	0	0	0	1	11889	1045	37	4		4	PID1	2	229890657	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10	133029949	229890657	13308716	20	18478											
SP110	3431	hgsc.bcm.edu;ucsc.edu	37	2	231033926	231033926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	231033926	C	T	231033926	3	4	288	1	0	0	0	0	1	0	0	0	14974	826	29	2	89	2	SP110	2	231033926	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	1143269	231033926	12165447	21	18479											
CCNL1	57018	hgsc.bcm.edu	37	3	156877717	156877717	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	156877717	T	A	156877717	3	1	288	1	0	0	0	0	1	0	0	0	2933	1696	59	5	1457	5	CCNL1	3	156877717	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10		156877717	41144713	22	18480											
KIT	3815	hgsc.bcm.edu	37	4	55524186	55524186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	55524186	G	T	55524186	3	4	288	1	0	0	0	0	1	0	0	0	8336	942	33	4	7	4	KIT	4	55524186	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10		55524186	135630090	23	18481											
SRD5A3	79644	hgsc.bcm.edu;ucsc.edu	37	4	56236195	56236195	+	Silent	SNP	C	C	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	56236195	C	T	56236195	2	4	288	1	0	0	0	0	0	0	0	1	15152	912	32	2		2	SRD5A3	4	56236195	Silent	SNP	C	TCGA-BP-4165-01A-02D-1366-10	712009	56236195	134918081	24	18482											
PALLD	23022	hgsc.bcm.edu	37	4	169842820	169842820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	169842820	G	A	169842820	3	1	288	1	0	0	0	0	1	0	0	0	11414	1319	46	2	3559	2	PALLD	4	169842820	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	113606625	169842820	21311456	25	18483											
CMBL	134147	hgsc.bcm.edu;ucsc.edu	37	5	10290761	10290761	+	Silent	SNP	G	G	A	rs146175625	bycluster;byfrequency;by1000genomes	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	10290761	G	A	10290761	2	1	288	1	0	0	0	0	0	0	0	1	3578	1103	39	1		1	CMBL	5	10290761	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10		10290761	170624499	26	18484											
AGXT2	64902	hgsc.bcm.edu;ucsc.edu	37	5	35025932	35025932	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	35025932	T	G	35025932	3	3	288	1	0	0	0	0	1	0	0	0	405	1609	56	5	669	5	AGXT2	5	35025932	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	24735171	35025932	145889328	27	18485											
ENC1	8507	hgsc.bcm.edu	37	5	73930904	73930904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	73930904	T	G	73930904	3	3	288	1	0	0	0	0	1	0	0	0	5115	1838	64	5	366	5	ENC1	5	73930904	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	38904972	73930904	106984356	28	18486											
FBN2	2201	hgsc.bcm.edu;ucsc.edu	37	5	127712442	127712442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	127712442	T	A	127712442	3	1	288	1	0	0	0	0	1	0	0	0	5710	1841	64	5	6992	5	FBN2	5	127712442	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	53781538	127712442	53202818	29	18487											
THOC3	84321	hgsc.bcm.edu	37	5	175392006	175392006	+	Missense_Mutation	SNP	C	C	T	rs3185226		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	175392006	C	T	175392006	3	4	288	1	0	0	0	0	1	0	0	0	15878	826	29	2	494	2	THOC3	5	175392006	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	47679564	175392006	5523254	30	18488											
GPRIN1	114787	hgsc.bcm.edu	37	5	176024673	176024673	+	Silent	SNP	G	G	C	rs150980841	alternate_allele	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	176024673	G	C	176024673	2	2	288	1	0	0	0	0	0	0	0	1	6736	987	35	4		4	GPRIN1	5	176024673	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10	632667	176024673	4890587	31	18489											
ZNF454	285676	hgsc.bcm.edu;ucsc.edu	37	5	178373911	178373911	+	Silent	SNP	C	C	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	178373911	C	G	178373911	2	3	288	1	0	0	0	0	0	0	0	1	17935	581	21	4		4	ZNF454	5	178373911	Silent	SNP	C	TCGA-BP-4165-01A-02D-1366-10	2349238	178373911	2541349	32	18490											
MYLK4	340156	hgsc.bcm.edu	37	6	2685575	2685575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	2685575	T	C	2685575	3	2	288	1	0	0	0	0	1	0	0	0	10066	1638	57	3	694	3	MYLK4	6	2685575	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10		2685575	168429492	33	18491											
ALDH5A1	7915	hgsc.bcm.edu	37	6	24520670	24520670	+	Silent	SNP	T	T	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	24520670	T	C	24520670	2	2	288	1	0	0	0	0	0	0	0	1	502	1509	53	3		3	ALDH5A1	6	24520670	Silent	SNP	T	TCGA-BP-4165-01A-02D-1366-10	21835095	24520670	146594397	34	18492											
OR2B2	81697	hgsc.bcm.edu	37	6	27879581	27879581	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	27879581	C	G	27879581	3	3	288	1	0	0	0	0	1	0	0	0	10996	922	32	4	560	4	OR2B2	6	27879581	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	3358911	27879581	143235486	35	18493											
OR2B3	442184	hgsc.bcm.edu	37	6	29054494	29054494	+	Missense_Mutation	SNP	A	A	C	rs181892071	by1000genomes	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	29054494	A	C	29054494	3	2	288	1	0	0	0	0	1	0	0	0	10997	14	1	5	413	5	OR2B3	6	29054494	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	1174913	29054494	142060573	36	18494											
UHRF1BP1	54887	hgsc.bcm.edu	37	6	34826902	34826902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	34826902	C	G	34826902	3	3	288	1	0	0	0	0	1	0	0	0	16980	506	18	4	2823	4	UHRF1BP1	6	34826902	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	5772408	34826902	136288165	37	18495											
PNRC1	10957	hgsc.bcm.edu	37	6	89793882	89793882	+	Silent	SNP	A	A	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	89793882	A	G	89793882	2	3	288	1	0	0	0	0	0	0	0	1	12181	378	14	3		3	PNRC1	6	89793882	Silent	SNP	A	TCGA-BP-4165-01A-02D-1366-10	54966980	89793882	81321185	38	18496											
PREP	5550	hgsc.bcm.edu;ucsc.edu	37	6	105729690	105729690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	105729690	G	T	105729690	3	4	288	1	0	0	0	0	1	0	0	0	12484	1261	44	4	371	4	PREP	6	105729690	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	15935808	105729690	65385377	39	18497											
ABHD11	83451	hgsc.bcm.edu	37	7	73153111	73153111	+	Missense_Mutation	SNP	T	T	C	rs111275772		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	73153111	T	C	73153111	3	2	288	1	0	0	0	0	1	0	0	0	75	1580	55	3	1225	3	ABHD11	7	73153111	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10		73153111	85985552	40	18498											
LAT2	7462	hgsc.bcm.edu;ucsc.edu	37	7	73638987	73638987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	73638987	C	A	73638987	3	1	288	1	0	0	0	0	1	0	0	0	8652	710	25	4	689	4	LAT2	7	73638987	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	485876	73638987	85499676	41	18499											
UPK3B	80761	hgsc.bcm.edu	37	7	76143372	76143372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	76143372	T	C	76143372	3	2	288	1	0	0	0	0	1	0	0	0	17023	1821	63	3	829	3	UPK3B	7	76143372	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	2504385	76143372	82995291	42	18500											
GIMAP2	26157	hgsc.bcm.edu;ucsc.edu	37	7	150390179	150390179	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	150390179	A	C	150390179	3	2	288	1	0	0	0	0	1	0	0	0	6387	43	2	5	811	5	GIMAP2	7	150390179	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	74246807	150390179	8748484	43	18501											
FASTK	10922	hgsc.bcm.edu	37	7	150773915	150773915	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	150773915	G	C	150773915	3	2	288	1	0	0	0	0	1	0	0	0	5691	1232	43	4	106	4	FASTK	7	150773915	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	383736	150773915	8364748	44	18502											
ANK1	286	hgsc.bcm.edu	37	8	41577248	41577248	+	Silent	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	41577248	G	T	41577248	2	4	288	1	0	0	0	0	0	0	0	1	620	1219	43	4		4	ANK1	8	41577248	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10		41577248	104786774	45	18503											
MATN2	4147	hgsc.bcm.edu;ucsc.edu	37	8	99030307	99030307	+	Silent	SNP	G	G	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	99030307	G	A	99030307	2	1	288	1	0	0	0	0	0	0	0	1	9341	991	35	2		2	MATN2	8	99030307	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10	57453059	99030307	47333715	46	18504											
SPAG1	6674	hgsc.bcm.edu;ucsc.edu	37	8	101237526	101237526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	101237526	A	T	101237526	3	4	288	1	0	0	0	0	1	0	0	0	14988	130	5	5	1864	5	SPAG1	8	101237526	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	2207219	101237526	45126496	47	18505											
ADCY8	114	hgsc.bcm.edu	37	8	131916200	131916200	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	131916200	G	C	131916200	3	2	288	1	0	0	0	0	1	0	0	0	300	991	35	4	2074	4	ADCY8	8	131916200	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	30678674	131916200	14447822	48	18506											
ST3GAL1	6482	hgsc.bcm.edu	37	8	134488010	134488010	+	Silent	SNP	C	C	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	134488010	C	T	134488010	2	4	288	1	0	0	0	0	0	0	0	1	15226	813	29	2		2	ST3GAL1	8	134488010	Silent	SNP	C	TCGA-BP-4165-01A-02D-1366-10	2571810	134488010	11876012	49	18507											
ZNF623	9831	hgsc.bcm.edu;ucsc.edu	37	8	144732667	144732667	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	144732667	T	A	144732667	3	1	288	1	0	0	0	0	1	0	0	0	18059	1464	51	5	627	5	ZNF623	8	144732667	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	10244657	144732667	1631355	50	18508											
SLC39A4	55630	hgsc.bcm.edu	37	8	145638895	145638895	+	Splice_Site	SNP	A	A	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	145638895	A	C	145638895	5	2	288	1	0	0	0	0	0	0	1	0	14633	173	6	5	483	5	SLC39A4	8	145638895	Splice_Site	SNP	A	TCGA-BP-4165-01A-02D-1366-10	906228	145638895	725127	51	18509											
C9orf125	0	hgsc.bcm.edu;ucsc.edu	37	9	104239229	104239229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	104239229	G	T	104239229	3	4	288	1	0	0	0	0	1	0	0	0	2456	942	33	4	1069	4	C9orf125	9	104239229	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10		104239229	36974202	52	18510											
TTLL11	158135	hgsc.bcm.edu;ucsc.edu	37	9	124794125	124794125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	124794125	C	A	124794125	3	1	288	1	0	0	0	0	1	0	0	0	16736	912	32	4	1668	4	TTLL11	9	124794125	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	20554896	124794125	16419306	53	18511											
C9orf106	414318	hgsc.bcm.edu	37	9	132084485	132084485	+	Silent	SNP	A	A	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	132084485	A	T	132084485	2	4	288	1	0	0	0	0	0	0	0	1	2449	407	15	5		5	C9orf106	9	132084485	Silent	SNP	A	TCGA-BP-4165-01A-02D-1366-10	7290360	132084485	9128946	54	18512											
FAM188A	80013	hgsc.bcm.edu;ucsc.edu	37	10	15880262	15880262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	15880262	T	A	15880262	3	1	288	1	0	0	0	0	1	0	0	0	5518	1606	56	5	955	5	FAM188A	10	15880262	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10		15880262	119654485	55	18513											
CUBN	8029	hgsc.bcm.edu;ucsc.edu	37	10	17126413	17126413	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	17126413	A	C	17126413	3	2	288	1	0	0	0	0	1	0	0	0	4053	72	3	5	8917	5	CUBN	10	17126413	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	1246151	17126413	118408334	56	18514											
CTBP2	1488	hgsc.bcm.edu	37	10	126682443	126682443	+	Missense_Mutation	SNP	G	G	T	rs76582415	bycluster	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	126682443	G	T	126682443	3	4	288	1	0	0	0	0	1	0	0	0	4000	1319	46	4	461	4	CTBP2	10	126682443	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	109556030	126682443	8852304	57	18515											
EBF3	253738	hgsc.bcm.edu	37	10	131671768	131671768	+	Silent	SNP	C	C	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	131671768	C	A	131671768	2	1	288	1	0	0	0	0	0	0	0	1	4884	610	22	4		4	EBF3	10	131671768	Silent	SNP	C	TCGA-BP-4165-01A-02D-1366-10	4989325	131671768	3862979	58	18516											
SPTBN2	6712	hgsc.bcm.edu;ucsc.edu	37	11	66481623	66481623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	66481623	G	A	66481623	3	1	288	1	0	0	0	0	1	0	0	0	15132	1377	48	2	6705	2	SPTBN2	11	66481623	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10		66481623	68524893	59	18517											
MYO7A	4647	hgsc.bcm.edu;ucsc.edu	37	11	76873961	76873961	+	Silent	SNP	C	C	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	76873961	C	T	76873961	2	4	288	1	0	0	0	0	0	0	0	1	10089	845	30	2		2	MYO7A	11	76873961	Silent	SNP	C	TCGA-BP-4165-01A-02D-1366-10	10392338	76873961	58132555	60	18518											
ENO2	2026	hgsc.bcm.edu	37	12	7031310	7031310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	7031310	G	T	7031310	3	4	288	1	0	0	0	0	1	0	0	0	5124	1232	43	4	1193	4	ENO2	12	7031310	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10		7031310	126820585	61	18519											
KRT71	112802	hgsc.bcm.edu	37	12	52946779	52946779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	52946779	C	T	52946779	3	4	288	1	0	0	0	0	1	0	0	0	8491	797	28	2	1524	2	KRT71	12	52946779	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	45915469	52946779	80905116	62	18520											
GEFT	0	hgsc.bcm.edu;ucsc.edu	37	12	58008143	58008143	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	58008143	T	A	58008143	3	1	288	1	0	0	0	0	1	0	0	0	6335	1580	55	5	934	5	GEFT	12	58008143	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	5061364	58008143	75843752	63	18521											
AMDHD1	144193	hgsc.bcm.edu	37	12	96350642	96350642	+	Silent	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	96350642	G	T	96350642	2	4	288	1	0	0	0	0	0	0	0	1	567	1335	47	4		4	AMDHD1	12	96350642	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10	38342499	96350642	37501253	64	18522											
RNF34	80196	hgsc.bcm.edu	37	12	121861336	121861336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	121861336	G	A	121861336	3	1	288	1	0	0	0	0	1	0	0	0	13502	1319	46	2	1111	2	RNF34	12	121861336	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	25510694	121861336	11990559	65	18523											
RPGRIP1	57096	hgsc.bcm.edu;ucsc.edu	37	14	21771501	21771501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	21771501	C	A	21771501	3	1	288	1	0	0	0	0	1	0	0	0	13562	913	32	4	617	4	RPGRIP1	14	21771501	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10		21771501	85578039	66	18524											
GOLGA5	9950	hgsc.bcm.edu	37	14	93282749	93282749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	93282749	C	A	93282749	3	1	288	1	0	0	0	0	1	0	0	0	6563	797	28	4	1496	4	GOLGA5	14	93282749	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	71511248	93282749	14066791	67	18525											
FBN1	2200	hgsc.bcm.edu;ucsc.edu	37	15	48787391	48787391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	48787391	G	T	48787391	3	4	288	1	0	0	0	0	1	0	0	0	5709	1203	42	4	6189	4	FBN1	15	48787391	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10		48787391	53744001	68	18526											
PLIN1	5346	hgsc.bcm.edu	37	15	90210173	90210173	+	Silent	SNP	G	G	A	rs151265993		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	90210173	G	A	90210173	2	1	288	1	0	0	0	0	0	0	0	1	12096	1140	40	1		1	PLIN1	15	90210173	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10	41422782	90210173	12321219	69	18527											
ANPEP	290	hgsc.bcm.edu	37	15	90342493	90342493	+	Silent	SNP	G	G	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	90342493	G	C	90342493	2	2	288	1	0	0	0	0	0	0	0	1	710	1335	47	4		4	ANPEP	15	90342493	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10	132320	90342493	12188899	70	18528											
IQGAP1	8826	hgsc.bcm.edu;ucsc.edu	37	15	90991847	90991847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	90991847	G	C	90991847	3	2	288	1	0	0	0	0	1	0	0	0	7821	1174	41	4	994	4	IQGAP1	15	90991847	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	649354	90991847	11539545	71	18529											
RRAD	6236	hgsc.bcm.edu	37	16	66956063	66956063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	66956063	G	T	66956063	3	4	288	1	0	0	0	0	1	0	0	0	13684	933	33	4	87	4	RRAD	16	66956063	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10		66956063	23398690	72	18530											
ZFHX3	463	hgsc.bcm.edu	37	16	72991372	72991372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	72991372	G	T	72991372	3	4	288	1	0	0	0	0	1	0	0	0	17646	1165	41	4	8474	4	ZFHX3	16	72991372	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	6035309	72991372	17363381	73	18531											
GSG2	83903	hgsc.bcm.edu	37	17	3628888	3628888	+	Silent	SNP	A	A	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	3628888	A	C	3628888	2	2	288	1	0	0	0	0	0	0	0	1	6829	175	7	5		5	GSG2	17	3628888	Silent	SNP	A	TCGA-BP-4165-01A-02D-1366-10		3628888	77566322	74	18532											
GPR172B	0	hgsc.bcm.edu	37	17	4936580	4936582	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	-	4936582	GCC	-	4936580	7	5	288	1	0	1	0	1	0	0	0	0	6677	1306	46	0	244	0	GPR172B	17	4936580	In_Frame_Del	DEL	GCC	TCGA-BP-4165-01A-02D-1366-10	1307692	4936580	76258630	75	18533											
AURKB	9212	hgsc.bcm.edu	37	17	8110133	8110133	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	8110133	G	C	8110133	3	2	288	1	0	0	0	0	1	0	0	0	1223	1232	43	4	578	4	AURKB	17	8110133	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	3173553	8110133	73085077	76	18534											
MYO15A	51168	hgsc.bcm.edu	37	17	18057187	18057187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	18057187	T	G	18057187	3	3	288	1	0	0	0	0	1	0	0	0	10070	1580	55	5	8227	5	MYO15A	17	18057187	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	9947054	18057187	63138023	77	18535											
GIT1	28964	hgsc.bcm.edu	37	17	27902652	27902652	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	27902652	G	C	27902652	3	2	288	1	0	0	0	0	1	0	0	0	6403	962	34	4	479	4	GIT1	17	27902652	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	9845465	27902652	53292558	78	18536											
CACNB1	782	hgsc.bcm.edu	37	17	37347804	37347804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	37347804	C	G	37347804	3	3	288	1	0	0	0	0	1	0	0	0	2554	478	17	4	1894	4	CACNB1	17	37347804	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	9445152	37347804	43847406	79	18537											
STAC2	342667	hgsc.bcm.edu	37	17	37374147	37374147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	37374147	A	G	37374147	3	3	288	1	0	0	0	0	1	0	0	0	15252	130	5	3	905	3	STAC2	17	37374147	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	26343	37374147	43821063	80	18538											
KRT37	8688	hgsc.bcm.edu	37	17	39579168	39579168	+	Silent	SNP	G	G	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	39579168	G	C	39579168	2	2	288	1	0	0	0	0	0	0	0	1	8481	1219	43	4		4	KRT37	17	39579168	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10	2205021	39579168	41616042	81	18539											
AOC2	314	hgsc.bcm.edu;ucsc.edu	37	17	40997960	40997960	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	40997960	T	G	40997960	3	3	288	1	0	0	0	0	1	0	0	0	727	1490	52	5	1319	5	AOC2	17	40997960	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10	1418792	40997960	40197250	82	18540											
MTMR4	9110	hgsc.bcm.edu	37	17	56584196	56584196	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	56584196	G	C	56584196	3	2	288	1	0	0	0	0	1	0	0	0	9953	1377	48	4	2728	4	MTMR4	17	56584196	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	15586236	56584196	24611014	83	18541											
DLGAP1	9229	hgsc.bcm.edu	37	18	3742493	3742493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	3742493	G	A	3742493	3	1	288	1	0	0	0	0	1	0	0	0	4561	1261	44	2	1773	2	DLGAP1	18	3742493	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10		3742493	74334755	84	18542											
PLIN4	729359	hgsc.bcm.edu	37	19	4511746	4511746	+	Missense_Mutation	SNP	A	A	T	rs62115192	bycluster;by1000genomes	TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	4511746	A	T	4511746	3	4	288	1	0	0	0	0	1	0	0	0	12099	214	8	5	1905	5	PLIN4	19	4511746	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10		4511746	54617237	85	18543											
PKN1	5585	hgsc.bcm.edu	37	19	14574545	14574545	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	14574545	A	T	14574545	4	4	288	1	0	0	0	0	0	1	0	0	11986	131	5	5	1567	5	PKN1	19	14574545	Nonsense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	10062799	14574545	44554438	86	18544											
HSH2D	84941	hgsc.bcm.edu	37	19	16259645	16259645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	16259645	G	A	16259645	3	1	288	1	0	0	0	0	1	0	0	0	7407	942	33	2	87	2	HSH2D	19	16259645	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	1685100	16259645	42869338	87	18545											
ANKRD27	84079	hgsc.bcm.edu;ucsc.edu	37	19	33119747	33119747	+	Silent	SNP	T	T	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	33119747	T	C	33119747	2	2	288	1	0	0	0	0	0	0	0	1	655	1451	51	3		3	ANKRD27	19	33119747	Silent	SNP	T	TCGA-BP-4165-01A-02D-1366-10	16860102	33119747	26009236	88	18546											
SUPT5H	6829	hgsc.bcm.edu;ucsc.edu	37	19	39936543	39936543	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	39936543	G	T	39936543	4	4	288	1	0	0	0	0	0	1	0	0	15411	1059	37	4	15	4	SUPT5H	19	39936543	Nonsense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	6816796	39936543	19192440	89	18547											
B3GNT8	374907	hgsc.bcm.edu	37	19	41932611	41932611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	41932611	A	G	41932611	3	3	288	1	0	0	0	0	1	0	0	0	1263	159	6	3	1124	3	B3GNT8	19	41932611	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	1996068	41932611	17196372	90	18548											
CGB	1082	hgsc.bcm.edu	37	19	49526180	49526180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	49526180	A	G	49526180	3	3	288	1	0	0	0	0	1	0	0	0	3298	304	11	3	40	3	CGB	19	49526180	Missense_Mutation	SNP	A	TCGA-BP-4165-01A-02D-1366-10	7593569	49526180	9602803	91	18549											
IL4I1	259307	hgsc.bcm.edu	37	19	50394326	50394326	+	Silent	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	50394326	G	T	50394326	2	4	288	1	0	0	0	0	0	0	0	1	7704	1103	39	4		4	IL4I1	19	50394326	Silent	SNP	G	TCGA-BP-4165-01A-02D-1366-10	868146	50394326	8734657	92	18550											
ZNF329	79673	hgsc.bcm.edu;ucsc.edu	37	19	58640489	58640489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	58640489	C	A	58640489	3	1	288	1	0	0	0	0	1	0	0	0	17859	681	24	4	1247	4	ZNF329	19	58640489	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	8246163	58640489	488494	93	18551											
CD93	22918	hgsc.bcm.edu	37	20	23065760	23065760	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	23065760	T	A	23065760	3	1	288	1	0	0	0	0	1	0	0	0	3049	1551	54	5	896	5	CD93	20	23065760	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10		23065760	39959760	94	18552											
ASXL1	171023	hgsc.bcm.edu	37	20	31021493	31021493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	31021493	G	T	31021493	3	4	288	1	0	0	0	0	1	0	0	0	1066	1203	42	4	1544	4	ASXL1	20	31021493	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	7955733	31021493	32004027	95	18553											
PIGT	51604	hgsc.bcm.edu	37	20	44054403	44054403	+	Silent	SNP	A	A	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	44054403	A	C	44054403	2	2	288	1	0	0	0	0	0	0	0	1	11906	175	7	5		5	PIGT	20	44054403	Silent	SNP	A	TCGA-BP-4165-01A-02D-1366-10	13032910	44054403	18971117	96	18554											
SLC12A5	57468	hgsc.bcm.edu	37	20	44680323	44680323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	44680323	C	A	44680323	3	1	288	1	0	0	0	0	1	0	0	0	14399	768	27	4	2386	4	SLC12A5	20	44680323	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	625920	44680323	18345197	97	18555											
C20orf43	0	hgsc.bcm.edu;ucsc.edu	37	20	55088389	55088389	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	55088389	G	T	55088389	4	4	288	1	0	0	0	0	0	1	0	0	2114	1175	41	4	518	4	C20orf43	20	55088389	Nonsense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10	10408066	55088389	7937131	98	18556											
SON	6651	hgsc.bcm.edu	37	21	34926967	34926967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	34926967	T	A	34926967	3	1	288	1	0	0	0	0	1	0	0	0	14939	1403	49	5	5440	5	SON	21	34926967	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02D-1366-10		34926967	13202928	99	18557											
CLTCL1	8218	hgsc.bcm.edu	37	22	19241625	19241625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	19241625	C	T	19241625	3	4	288	1	0	0	0	0	1	0	0	0	3569	768	27	1	4666	1	CLTCL1	22	19241625	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10		19241625	32062941	100	18558											
SBF1	6305	hgsc.bcm.edu	37	22	50904777	50904777	+	Splice_Site	SNP	A	A	C	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	C	50904777	A	C	50904777	5	2	288	1	0	0	0	0	0	0	1	0	13871	173	6	5	5031	5	SBF1	22	50904777	Splice_Site	SNP	A	TCGA-BP-4165-01A-02D-1366-10	31663152	50904777	399789	101	18559											
WDR13	64743	hgsc.bcm.edu	37	X	48456398	48456398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	T	48456398	G	T	48456398	3	4	288	1	0	0	0	0	1	0	0	0	17287	1357	47	4	16	4	WDR13	23	48456398	Missense_Mutation	SNP	G	TCGA-BP-4165-01A-02D-1366-10		48456398	106814162	102	18560											
CLDN2	9075	hgsc.bcm.edu;ucsc.edu	37	X	106171559	106171559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	A	106171559	C	A	106171559	3	1	288	1	0	0	0	0	1	0	0	0	3483	913	32	4	103	4	CLDN2	23	106171559	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	57715161	106171559	49099001	103	18561											
SSR4	6748	hgsc.bcm.edu;ucsc.edu	37	X	153063555	153063555	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4165-01A-02D-1366-10	TCGA-BP-4165-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d09d49c-d7eb-49f4-b418-246677073bce	da0537a8-235f-4424-af37-501ef124e64d	G	153063555	C	G	153063555	3	3	288	1	0	0	0	0	1	0	0	0	15205	816	29	4	399	4	SSR4	23	153063555	Missense_Mutation	SNP	C	TCGA-BP-4165-01A-02D-1366-10	46891996	153063555	2207005	104	18562											
SUCLG1	8802	hgsc.bcm.edu	37	2	84686333	84686337	+	Frame_Shift_Del	DEL	GGCCG	GGCCG	-	novel		TCGA-BP-4165-01A-02W-1362-10	TCGA-BP-4165-11A-01W-1362-10	GGCCG	GGCCG	GGCCG	-	GGCCG	GGCCG	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	79837c35-321a-419b-a27b-26a5385c774e	f91c667a-e82c-41f8-9d6a-6bd74620085b	-	84686337	GGCCG	-	84686333	7	5	289	1	0	1	0	1	0	0	0	0	15376	1000	35	0	1015	0	SUCLG1	2	84686333	Frame_Shift_Del	DEL	GGCCG	TCGA-BP-4165-01A-02W-1362-10		84686333	158513040	1	18563	240	2									
SUCLG1	8802	hgsc.bcm.edu	37	2	84686342	84686342	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4165-01A-02W-1362-10	TCGA-BP-4165-11A-01W-1362-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	79837c35-321a-419b-a27b-26a5385c774e	f91c667a-e82c-41f8-9d6a-6bd74620085b	G	84686342	T	G	84686342	3	3	289	1	0	0	0	0	1	0	0	0	15376	1580	55	5	1024	5	SUCLG1	2	84686342	Missense_Mutation	SNP	T	TCGA-BP-4165-01A-02W-1362-10	9	84686342	158513031	2	18564	240	2									
VPS13D	55187	hgsc.bcm.edu	37	1	12409403	12409403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	G	12409403	A	G	12409403	3	3	290	1	0	0	0	0	1	0	0	0	17204	449	16	3	9581	3	VPS13D	1	12409403	Missense_Mutation	SNP	A	TCGA-BP-4166-01A-02D-1366-10		12409403	236841218	1	18565											
MAST2	23139	hgsc.bcm.edu	37	1	46493446	46493446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	46493446	G	A	46493446	3	1	290	1	0	0	0	0	1	0	0	0	9332	1349	47	2	2029	2	MAST2	1	46493446	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	34084043	46493446	202757175	2	18566											
SETDB1	9869	hgsc.bcm.edu	37	1	150923454	150923454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	150923454	C	T	150923454	3	4	290	1	0	0	0	0	1	0	0	0	14151	623	22	2	2147	2	SETDB1	1	150923454	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	104430008	150923454	98327167	3	18567											
FAM78B	149297	hgsc.bcm.edu	37	1	166135390	166135390	+	Silent	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	166135390	C	A	166135390	2	1	290	1	0	0	0	0	0	0	0	1	5634	755	27	4		4	FAM78B	1	166135390	Silent	SNP	C	TCGA-BP-4166-01A-02D-1366-10	15211936	166135390	83115231	4	18568											
BAT2L2	0	hgsc.bcm.edu	37	1	171526902	171526902	+	Missense_Mutation	SNP	C	C	A	rs144754525	alternate_allele	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	171526902	C	A	171526902	3	1	290	1	0	0	0	0	1	0	0	0	1321	855	30	4	5715	4	BAT2L2	1	171526902	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	5391512	171526902	77723719	5	18569											
FASLG	356	hgsc.bcm.edu	37	1	172635132	172635132	+	Silent	SNP	G	G	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	172635132	G	T	172635132	2	4	290	1	0	0	0	0	0	0	0	1	5689	1132	40	4		4	FASLG	1	172635132	Silent	SNP	G	TCGA-BP-4166-01A-02D-1366-10	1108230	172635132	76615489	6	18570											
TRIM58	25893	hgsc.bcm.edu	37	1	248039771	248039771	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	248039771	G	C	248039771	3	2	290	1	0	0	0	0	1	0	0	0	16543	1377	48	4	1463	4	TRIM58	1	248039771	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	75404639	248039771	1210850	7	18571											
ETAA1	54465	hgsc.bcm.edu	37	2	67631831	67631831	+	Missense_Mutation	SNP	G	G	A	rs61740794	bycluster;byfrequency;by1000genomes	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	67631831	G	A	67631831	3	1	290	1	0	0	0	0	1	0	0	0	5269	1059	37	1	2035	1	ETAA1	2	67631831	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10		67631831	175567542	8	18572											
RANBP2	5903	hgsc.bcm.edu;ucsc.edu	37	2	109381107	109381107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	109381107	A	T	109381107	3	4	290	1	0	0	0	0	1	0	0	0	13041	14	1	5	4190	5	RANBP2	2	109381107	Missense_Mutation	SNP	A	TCGA-BP-4166-01A-02D-1366-10	41749276	109381107	133818266	9	18573											
PTPRN	5798	hgsc.bcm.edu	37	2	220159785	220159785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	220159785	C	T	220159785	3	4	290	1	0	0	0	0	1	0	0	0	12820	864	30	2	372	2	PTPRN	2	220159785	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	110778678	220159785	23039588	10	18574											
DLEC1	9940	hgsc.bcm.edu	37	3	38141827	38141827	+	Silent	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	38141827	G	A	38141827	2	1	290	1	0	0	0	0	0	0	0	1	4554	1219	43	2		2	DLEC1	3	38141827	Silent	SNP	G	TCGA-BP-4166-01A-02D-1366-10		38141827	159880603	11	18575											
KIF15	56992	hgsc.bcm.edu	37	3	44846572	44846572	+	Missense_Mutation	SNP	A	A	T	rs113556197		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	44846572	A	T	44846572	3	4	290	1	0	0	0	0	1	0	0	0	8284	159	6	5	1799	5	KIF15	3	44846572	Missense_Mutation	SNP	A	TCGA-BP-4166-01A-02D-1366-10	6704745	44846572	153175858	12	18576											
SELK	58515	hgsc.bcm.edu;ucsc.edu	37	3	53919916	53919916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	53919916	C	T	53919916	3	4	290	1	0	0	0	0	1	0	0	0	14028	913	32	2	74	2	SELK	3	53919916	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	9073344	53919916	144102514	13	18577											
POU1F1	5449	hgsc.bcm.edu	37	3	87322594	87322594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	87322594	G	C	87322594	3	2	290	1	0	0	0	0	1	0	0	0	12276	933	33	4	778	4	POU1F1	3	87322594	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	33402678	87322594	110699836	14	18578											
ST3GAL6	10402	hgsc.bcm.edu	37	3	98503802	98503802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	98503802	A	C	98503802	3	2	290	1	0	0	0	0	1	0	0	0	15231	15	1	5	367	5	ST3GAL6	3	98503802	Missense_Mutation	SNP	A	TCGA-BP-4166-01A-02D-1366-10	11181208	98503802	99518628	15	18579											
NFKBIZ	64332	hgsc.bcm.edu;ucsc.edu	37	3	101571994	101571994	+	Silent	SNP	C	C	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	101571994	C	T	101571994	2	4	290	1	0	0	0	0	0	0	0	1	10390	581	21	2		2	NFKBIZ	3	101571994	Silent	SNP	C	TCGA-BP-4166-01A-02D-1366-10	3068192	101571994	96450436	16	18580											
ABCC5	10057	hgsc.bcm.edu	37	3	183669312	183669312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	183669312	C	T	183669312	3	4	290	1	0	0	0	0	1	0	0	0	56	681	24	2	1496	2	ABCC5	3	183669312	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	82097318	183669312	14353118	17	18581											
WDR53	348793	hgsc.bcm.edu;ucsc.edu	37	3	196288045	196288045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	196288045	G	A	196288045	3	1	290	1	0	0	0	0	1	0	0	0	17317	1294	45	2	782	2	WDR53	3	196288045	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	12618733	196288045	1734385	18	18582											
TEC	100124696	hgsc.bcm.edu	37	4	48151686	48151686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	48151686	C	A	48151686	3	1	290	1	0	0	0	0	1	0	0	0	15754	738	26	4	1033	4	TEC	4	48151686	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10		48151686	143002590	19	18583											
HPSE	10855	hgsc.bcm.edu	37	4	84240608	84240608	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	84240608	C	A	84240608	4	1	290	1	0	0	0	0	0	1	0	0	7351	603	21	4	1283	4	HPSE	4	84240608	Nonsense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	36088922	84240608	106913668	20	18584											
TET2	54790	hgsc.bcm.edu	37	4	106180797	106180797	+	Silent	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	106180797	G	A	106180797	2	1	290	1	0	0	0	0	0	0	0	1	15782	1190	42	2		2	TET2	4	106180797	Silent	SNP	G	TCGA-BP-4166-01A-02D-1366-10	21940189	106180797	84973479	21	18585											
C4orf29	80167	hgsc.bcm.edu	37	4	128949839	128949839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	128949839	G	A	128949839	3	1	290	1	0	0	0	0	1	0	0	0	2261	1290	45	2	943	2	C4orf29	4	128949839	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	22769042	128949839	62204437	22	18586											
AFF4	27125	hgsc.bcm.edu	37	5	132270357	132270358	+	In_Frame_Ins	INS	-	-	GCT	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	GCT	132270358	-	GCT	132270357	7	5	290	1	0	1	1	0	0	0	0	0	359	1357	47	0	3167	0	AFF4	5	132270357	In_Frame_Ins	INS	-	TCGA-BP-4166-01A-02D-1366-10		132270357	48644903	23	18587											
CSF1R	1436	hgsc.bcm.edu	37	5	149447888	149447888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	149447888	G	A	149447888	3	1	290	1	0	0	0	0	1	0	0	0	3934	1348	47	2	1450	2	CSF1R	5	149447888	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	17177531	149447888	31467372	24	18588											
UIMC1	51720	hgsc.bcm.edu;ucsc.edu	37	5	176334129	176334129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	176334129	T	C	176334129	3	2	290	1	0	0	0	0	1	0	0	0	16983	1551	54	3	273	3	UIMC1	5	176334129	Missense_Mutation	SNP	T	TCGA-BP-4166-01A-02D-1366-10	26886241	176334129	4581131	25	18589											
DNAH8	1769	hgsc.bcm.edu	37	6	38754603	38754603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	38754603	C	T	38754603	3	4	290	1	0	0	0	0	1	0	0	0	4609	855	30	2	1861	2	DNAH8	6	38754603	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10		38754603	132360464	26	18590											
SRF	6722	hgsc.bcm.edu;ucsc.edu	37	6	43143556	43143556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	43143556	C	A	43143556	3	1	290	1	0	0	0	0	1	0	0	0	15155	623	22	4	903	4	SRF	6	43143556	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	4388953	43143556	127971511	27	18591											
PDSS2	57107	hgsc.bcm.edu;ucsc.edu	37	6	107595237	107595237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	107595237	G	C	107595237	3	2	290	1	0	0	0	0	1	0	0	0	11701	1261	44	4	597	4	PDSS2	6	107595237	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	64451681	107595237	63519830	28	18592											
STAG3	10734	hgsc.bcm.edu	37	7	99783914	99783914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	99783914	G	A	99783914	3	1	290	1	0	0	0	0	1	0	0	0	15256	1377	48	2	442	2	STAG3	7	99783914	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10		99783914	59354749	29	18593											
POP7	10248	hgsc.bcm.edu	37	7	100304542	100304542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	100304542	T	C	100304542	3	2	290	1	0	0	0	0	1	0	0	0	12261	1580	55	3	91	3	POP7	7	100304542	Missense_Mutation	SNP	T	TCGA-BP-4166-01A-02D-1366-10	520628	100304542	58834121	30	18594											
ZNF746	155061	hgsc.bcm.edu;ucsc.edu	37	7	149174659	149174659	+	Silent	SNP	G	G	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	149174659	G	T	149174659	2	4	290	1	0	0	0	0	0	0	0	1	18141	987	35	4		4	ZNF746	7	149174659	Silent	SNP	G	TCGA-BP-4166-01A-02D-1366-10	48870117	149174659	9964004	31	18595											
NAT2	10	hgsc.bcm.edu	37	8	18258036	18258036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	18258036	T	A	18258036	3	1	290	1	0	0	0	0	1	0	0	0	10184	1493	52	5	525	5	NAT2	8	18258036	Missense_Mutation	SNP	T	TCGA-BP-4166-01A-02D-1366-10		18258036	128105986	32	18596											
GBA2	57704	hgsc.bcm.edu;ucsc.edu	37	9	35740010	35740010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	35740010	G	T	35740010	3	4	290	1	0	0	0	0	1	0	0	0	6274	1116	39	4	1429	4	GBA2	9	35740010	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10		35740010	105473421	33	18597											
TMC1	117531	hgsc.bcm.edu	37	9	75369724	75369724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	75369724	G	T	75369724	3	4	290	1	0	0	0	0	1	0	0	0	15996	1203	42	4	695	4	TMC1	9	75369724	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	39629714	75369724	65843707	34	18598											
ZER1	10444	hgsc.bcm.edu;ucsc.edu	37	9	131502291	131502291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	131502291	G	T	131502291	3	4	290	1	0	0	0	0	1	0	0	0	17637	1232	43	4	355	4	ZER1	9	131502291	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	56132567	131502291	9711140	35	18599											
C11orf49	79096	hgsc.bcm.edu;ucsc.edu	37	11	47182704	47182704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	G	47182704	A	G	47182704	3	3	290	1	0	0	0	0	1	0	0	0	1647	333	12	3	814	3	C11orf49	11	47182704	Missense_Mutation	SNP	A	TCGA-BP-4166-01A-02D-1366-10		47182704	87823812	36	18600											
NRXN2	9379	hgsc.bcm.edu	37	11	64390412	64390412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	64390412	G	C	64390412	3	2	290	1	0	0	0	0	1	0	0	0	10673	1232	43	4	1164	4	NRXN2	11	64390412	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	17207708	64390412	70616104	37	18601											
ODZ4	0	hgsc.bcm.edu;ucsc.edu	37	11	78413073	78413073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	78413073	C	A	78413073	3	1	290	1	0	0	0	0	1	0	0	0	10844	594	21	4	3752	4	ODZ4	11	78413073	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	14022661	78413073	56593443	38	18602											
KIAA1826	0	hgsc.bcm.edu	37	11	105881275	105881275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	105881275	C	A	105881275	3	1	290	1	0	0	0	0	1	0	0	0	8267	826	29	4	675	4	KIAA1826	11	105881275	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	27468202	105881275	29125241	39	18603											
PARP11	57097	hgsc.bcm.edu;ucsc.edu	37	12	3921406	3921406	+	Silent	SNP	T	T	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	3921406	T	C	3921406	2	2	290	1	0	0	0	0	0	0	0	1	11463	1606	56	3		3	PARP11	12	3921406	Silent	SNP	T	TCGA-BP-4166-01A-02D-1366-10		3921406	129930489	40	18604											
ESPL1	9700	hgsc.bcm.edu;ucsc.edu	37	12	53684665	53684665	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	53684665	G	A	53684665	4	1	290	1	0	0	0	0	0	1	0	0	5255	1357	47	2	5499	2	ESPL1	12	53684665	Nonsense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	49763259	53684665	80167230	41	18605											
CDK2	1017	hgsc.bcm.edu	37	12	56363324	56363324	+	Silent	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	56363324	G	A	56363324	2	1	290	1	0	0	0	0	0	0	0	1	3138	1335	47	2		2	CDK2	12	56363324	Silent	SNP	G	TCGA-BP-4166-01A-02D-1366-10	2678659	56363324	77488571	42	18606											
NAB2	4665	hgsc.bcm.edu	37	12	57486952	57486952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	57486952	G	T	57486952	3	4	290	1	0	0	0	0	1	0	0	0	10139	1232	43	4	1268	4	NAB2	12	57486952	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	1123628	57486952	76364943	43	18607											
ZNF828	0	hgsc.bcm.edu;ucsc.edu	37	13	115090276	115090277	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	115090277	-	T	115090276	7	5	290	1	0	1	1	0	0	0	0	0	18193	681	24	0	961	0	ZNF828	13	115090276	Frame_Shift_Ins	INS	-	TCGA-BP-4166-01A-02D-1366-10		115090276	79602	44	18608											
MUDENG	0	hgsc.bcm.edu	37	14	57755564	57755564	+	Missense_Mutation	SNP	G	G	A	rs35759976	bycluster;byfrequency;by1000genomes	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	57755564	G	A	57755564	3	1	290	1	0	0	0	0	1	0	0	0	9990	971	34	2	1465	2	MUDENG	14	57755564	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10		57755564	49593976	45	18609											
CATSPERB	79820	hgsc.bcm.edu;ucsc.edu	37	14	92171025	92171025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	92171025	G	A	92171025	3	1	290	1	0	0	0	0	1	0	0	0	2693	1174	41	2	2947	2	CATSPERB	14	92171025	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	34415461	92171025	15178515	46	18610											
AGBL1	123624	hgsc.bcm.edu;ucsc.edu	37	15	86809654	86809654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	G	86809654	A	G	86809654	3	3	290	1	0	0	0	0	1	0	0	0	375	449	16	3	1617	3	AGBL1	15	86809654	Missense_Mutation	SNP	A	TCGA-BP-4166-01A-02D-1366-10		86809654	15721738	47	18611											
PDXDC1	23042	hgsc.bcm.edu	37	16	15098047	15098047	+	Missense_Mutation	SNP	C	C	G	rs11549900	bycluster;byfrequency;by1000genomes	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	G	15098047	C	G	15098047	3	3	290	1	0	0	0	0	1	0	0	0	11703	845	30	4	264	4	PDXDC1	16	15098047	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10		15098047	75256706	48	18612											
ABCC1	4363	hgsc.bcm.edu;ucsc.edu	37	16	16142001	16142001	+	Silent	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	16142001	C	A	16142001	2	1	290	1	0	0	0	0	0	0	0	1	49	610	22	4		4	ABCC1	16	16142001	Silent	SNP	C	TCGA-BP-4166-01A-02D-1366-10	1043954	16142001	74212752	49	18613											
PALB2	79728	hgsc.bcm.edu;ucsc.edu	37	16	23647169	23647169	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	23647169	A	T	23647169	3	4	290	1	0	0	0	0	1	0	0	0	11413	43	2	5	2902	5	PALB2	16	23647169	Missense_Mutation	SNP	A	TCGA-BP-4166-01A-02D-1366-10	7505168	23647169	66707584	50	18614											
CHD9	80205	hgsc.bcm.edu;ucsc.edu	37	16	53352219	53352219	+	Silent	SNP	T	T	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	53352219	T	A	53352219	2	1	290	1	0	0	0	0	0	0	0	1	3334	1683	59	5		5	CHD9	16	53352219	Silent	SNP	T	TCGA-BP-4166-01A-02D-1366-10	29705050	53352219	37002534	51	18615											
TXNL4B	54957	hgsc.bcm.edu;ucsc.edu	37	16	72124573	72124573	+	Silent	SNP	A	A	G	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	G	72124573	A	G	72124573	2	3	290	1	0	0	0	0	0	0	0	1	16818	40	2	3		3	TXNL4B	16	72124573	Silent	SNP	A	TCGA-BP-4166-01A-02D-1366-10	18772354	72124573	18230180	52	18616											
ANKRD11	29123	hgsc.bcm.edu	37	16	89348396	89348396	+	Silent	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	89348396	G	A	89348396	2	1	290	1	0	0	0	0	0	0	0	1	639	1335	47	2		2	ANKRD11	16	89348396	Silent	SNP	G	TCGA-BP-4166-01A-02D-1366-10	17223823	89348396	1006357	53	18617											
SPACA3	124912	hgsc.bcm.edu	37	17	31323913	31323913	+	Nonsense_Mutation	SNP	C	C	A	rs146926616	alternate_allele	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	31323913	C	A	31323913	4	1	290	1	0	0	0	0	0	1	0	0	14986	547	19	4	406	4	SPACA3	17	31323913	Nonsense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10		31323913	49871297	54	18618											
PPM1E	22843	hgsc.bcm.edu	37	17	57047047	57047047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	57047047	C	T	57047047	3	4	290	1	0	0	0	0	1	0	0	0	12348	643	23	1	945	1	PPM1E	17	57047047	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	25723134	57047047	24148163	55	18619											
MED13	9969	hgsc.bcm.edu;ucsc.edu	37	17	60088502	60088502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	60088502	T	C	60088502	3	2	290	1	0	0	0	0	1	0	0	0	9437	1493	52	3	5236	3	MED13	17	60088502	Missense_Mutation	SNP	T	TCGA-BP-4166-01A-02D-1366-10	3041455	60088502	21106708	56	18620											
LLGL2	3993	hgsc.bcm.edu	37	17	73569631	73569631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	73569631	G	T	73569631	3	4	290	1	0	0	0	0	1	0	0	0	8841	1116	39	4	2908	4	LLGL2	17	73569631	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	13481129	73569631	7625579	57	18621											
DLGAP1	9229	hgsc.bcm.edu;ucsc.edu	37	18	3582181	3582181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	3582181	G	T	3582181	3	4	290	1	0	0	0	0	1	0	0	0	4561	1261	44	4	1300	4	DLGAP1	18	3582181	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10		3582181	74495067	58	18622											
FBXO15	201456	hgsc.bcm.edu;ucsc.edu	37	18	71790669	71790669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	71790669	C	A	71790669	3	1	290	1	0	0	0	0	1	0	0	0	5735	478	17	4	472	4	FBXO15	18	71790669	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	68208488	71790669	6286579	59	18623											
JUNB	3726	hgsc.bcm.edu	37	19	12903620	12903620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	12903620	C	A	12903620	3	1	290	1	0	0	0	0	1	0	0	0	7977	535	19	4	1037	4	JUNB	19	12903620	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10		12903620	46225363	60	18624											
ZNF99	7652	hgsc.bcm.edu	37	19	22939931	22939931	+	Silent	SNP	C	C	T	rs34378744	by1000genomes	TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	22939931	C	T	22939931	2	4	290	1	0	0	0	0	0	0	0	1	18216	796	28	2		2	ZNF99	19	22939931	Silent	SNP	C	TCGA-BP-4166-01A-02D-1366-10	10036311	22939931	36189052	61	18625											
KIAA0355	9710	hgsc.bcm.edu;ucsc.edu	37	19	34832888	34832888	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	34832888	G	C	34832888	3	2	290	1	0	0	0	0	1	0	0	0	8177	991	35	4	2083	4	KIAA0355	19	34832888	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	11892957	34832888	24296095	62	18626											
SUPT5H	6829	hgsc.bcm.edu	37	19	39962250	39962250	+	Silent	SNP	A	A	G	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	G	39962250	A	G	39962250	2	3	290	1	0	0	0	0	0	0	0	1	15411	291	11	3		3	SUPT5H	19	39962250	Silent	SNP	A	TCGA-BP-4166-01A-02D-1366-10	5129362	39962250	19166733	63	18627											
PPP2R1A	5518	hgsc.bcm.edu	37	19	52716326	52716326	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	52716326	G	A	52716326	4	1	290	1	0	0	0	0	0	1	0	0	12392	1357	47	2	792	2	PPP2R1A	19	52716326	Nonsense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10	12754076	52716326	6412657	64	18628											
ZNF274	10782	hgsc.bcm.edu	37	19	58718359	58718360	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	58718360	-	A	58718359	7	5	290	1	0	1	1	0	0	0	0	0	17821	1175	41	0	543	0	ZNF274	19	58718359	Frame_Shift_Ins	INS	-	TCGA-BP-4166-01A-02D-1366-10	6002033	58718359	410624	65	18629											
SLC12A5	57468	hgsc.bcm.edu;ucsc.edu	37	20	44684789	44684789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	44684789	A	T	44684789	3	4	290	1	0	0	0	0	1	0	0	0	14399	347	12	5	2999	5	SLC12A5	20	44684789	Missense_Mutation	SNP	A	TCGA-BP-4166-01A-02D-1366-10		44684789	18340731	66	18630											
SLC13A3	64849	hgsc.bcm.edu;ucsc.edu	37	20	45204226	45204226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	T	45204226	C	T	45204226	3	4	290	1	0	0	0	0	1	0	0	0	14406	739	26	2	506	2	SLC13A3	20	45204226	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	519437	45204226	17821294	67	18631											
CACNA1I	8911	hgsc.bcm.edu;ucsc.edu	37	22	40038844	40038844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	C	40038844	A	C	40038844	3	2	290	1	0	0	0	0	1	0	0	0	2548	333	12	5	1125	5	CACNA1I	22	40038844	Missense_Mutation	SNP	A	TCGA-BP-4166-01A-02D-1366-10		40038844	11265722	68	18632											
TCF20	6942	hgsc.bcm.edu;ucsc.edu	37	22	42610520	42610520	+	Silent	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	42610520	G	A	42610520	2	1	290	1	0	0	0	0	0	0	0	1	15702	1372	48	2		2	TCF20	22	42610520	Silent	SNP	G	TCGA-BP-4166-01A-02D-1366-10	2571676	42610520	8694046	69	18633			1	37		2	2	19	N	G_C	4.1864e-05
TCF20	6942	hgsc.bcm.edu;ucsc.edu	37	22	42610538	42610538	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	G	42610538	C	G	42610538	3	3	290	1	0	0	0	0	1	0	0	0	15702	912	32	4	5146	4	TCF20	22	42610538	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	18	42610538	8694028	70	18634			1	37		2	2	19	N	G_C	4.1864e-05
RBM10	8241	hgsc.bcm.edu	37	X	47039844	47039844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	47039844	G	A	47039844	3	1	290	1	0	0	0	0	1	0	0	0	13124	1087	38	1	1229	1	RBM10	23	47039844	Missense_Mutation	SNP	G	TCGA-BP-4166-01A-02D-1366-10		47039844	108230716	71	18635											
GABRE	2564	hgsc.bcm.edu;ucsc.edu	37	X	151131006	151131006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4166-01A-02D-1366-10	TCGA-BP-4166-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	69b6d472-ae97-4f02-9bc1-ef5cddd06b0d	4b388afb-5597-450e-994e-30868558f595	A	151131006	C	A	151131006	3	1	290	1	0	0	0	0	1	0	0	0	6177	595	21	4	1092	4	GABRE	23	151131006	Missense_Mutation	SNP	C	TCGA-BP-4166-01A-02D-1366-10	104091162	151131006	4139554	72	18636											
VHL	7428	hgsc.bcm.edu	37	3	10183793	10183793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4166-01A-02W-1362-10	TCGA-BP-4166-11A-01W-1362-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	67fc0045-7628-4ef4-bef4-7f4f9354be45	70d9f823-dc5e-4da2-9b33-fde5df0d0459	A	10183793	T	A	10183793	3	1	291	1	0	0	0	0	1	0	0	0	17174	1464	51	5	264	5	VHL	3	10183793	Missense_Mutation	SNP	T	TCGA-BP-4166-01A-02W-1362-10		10183793	187838637	1	18637											
COL11A1	1301	broad.mit.edu;ucsc.edu	37	1	103444415	103444415	+	Splice_Site	SNP	C	A	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	103444415	A	A	103444415	5	1	292	1	0	0	0	0	0	0	1	0	3669	521	18	4	2846	4	COL11A1	1	103444415	Splice_Site	SNP	C	TCGA-BP-4167-01A-02D-1386-10		103444415	145806206	1	18638											
ANP32E	81611	hgsc.bcm.edu	37	1	150199042	150199042	+	Missense_Mutation	SNP	C	C	A	rs28594165		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	150199042	C	A	150199042	3	1	292	1	0	0	0	0	1	0	0	0	709	680	24	4	239	4	ANP32E	1	150199042	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10	46754627	150199042	99051579	2	18639	241	2									
ANP32E	81611	hgsc.bcm.edu	37	1	150199045	150199045	+	Silent	SNP	T	T	C	rs28460085	bycluster;byfrequency	TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	C	150199045	T	C	150199045	2	2	292	1	0	0	0	0	0	0	0	1	709	1606	56	3		3	ANP32E	1	150199045	Silent	SNP	T	TCGA-BP-4167-01A-02D-1386-10	3	150199045	99051576	3	18640	241	2									
SPTA1	6708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158655094	158655094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	158655094	T	G	158655094	3	3	292	1	0	0	0	0	1	0	0	0	15128	1551	54	5	7395	5	SPTA1	1	158655094	Missense_Mutation	SNP	T	TCGA-BP-4167-01A-02D-1386-10	8456049	158655094	90595527	4	18641											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179604819	179604819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	179604819	C	T	179604819	3	4	292	1	0	0	0	0	1	0	0	0	16747	864	30	2	91648	2	TTN	2	179604819	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10		179604819	63594554	5	18642											
VHL	7428	hgsc.bcm.edu	37	3	10183820	10183820	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01W-1244-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	06d67c16-1bb7-4454-a190-9e19549a1150	-	10183820	C	-	10183820	7	5	292	1	0	1	0	1	0	0	0	0	17174	739	26	0	291	0	VHL	3	10183820	Frame_Shift_Del	DEL	C	TCGA-BP-4167-01A-02D-1386-10		10183820	187838610	6	18643											
HACL1	26061	broad.mit.edu;ucsc.edu	37	3	15609989	15609989	+	Silent	SNP	A	G	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	15609989	G	G	15609989	2	3	292	1	0	0	0	0	0	0	0	1	6948	446	16	3		3	HACL1	3	15609989	Silent	SNP	A	TCGA-BP-4167-01A-02D-1386-10	5426169	15609989	182412441	7	18644											
ZNF621	285268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	40574134	40574134	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	40574134	T	A	40574134	4	1	292	1	0	0	0	0	0	1	0	0	18057	1442	50	5	887	5	ZNF621	3	40574134	Nonsense_Mutation	SNP	T	TCGA-BP-4167-01A-02D-1386-10	24964145	40574134	157448296	8	18645											
OSBPL11	114885	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	125286405	125286405	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	C	125286405	A	C	125286405	4	2	292	1	0	0	0	0	0	1	0	0	11283	372	13	5	1574	5	OSBPL11	3	125286405	Nonsense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	84712271	125286405	72736025	9	18646											
DZIP1L	199221	broad.mit.edu;ucsc.edu	37	3	137813771	137813771	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	137813771	T	T	137813771	3	4	292	1	0	0	0	0	1	0	0	0	4866	1203	42	4	1723	4	DZIP1L	3	137813771	Missense_Mutation	SNP	G	TCGA-BP-4167-01A-02D-1386-10	12527366	137813771	60208659	10	18647											
MUC4	4585	hgsc.bcm.edu	37	3	195509795	195509795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	195509795	C	T	195509795	3	4	292	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195509795	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10	57696024	195509795	2512635	11	18648											
MEGF10	84466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	126778709	126778709	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	126778709	T	G	126778709	4	3	292	1	0	0	0	0	0	1	0	0	9467	1471	51	5	2452	5	MEGF10	5	126778709	Nonsense_Mutation	SNP	T	TCGA-BP-4167-01A-02D-1386-10		126778709	54136551	12	18649											
ANKHD1-EIF4EBP3	404734	broad.mit.edu;ucsc.edu	37	5	139876772	139876772	+	Silent	SNP	T	C	C	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	C	139876772	C	C	139876772	2	2	292	1	0	0	0	0	0	0	0	1	629	1461	51	3		3	ANKHD1-EIF4EBP3	5	139876772	Silent	SNP	T	TCGA-BP-4167-01A-02D-1386-10	13098063	139876772	41038488	13	18650											
PCDHA5	56143	broad.mit.edu	37	5	140202962	140202962	+	Silent	SNP	G	A	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	140202962	A	A	140202962	2	1	292	1	0	0	0	0	0	0	0	1	11534	1277	45	2		2	PCDHA5	5	140202962	Silent	SNP	G	TCGA-BP-4167-01A-02D-1386-10	326190	140202962	40712298	14	18651											
TCF19	6941	broad.mit.edu	37	6	31127384	31127384	+	Silent	SNP	C	T	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	31127384	T	T	31127384	2	4	292	1	0	0	0	0	0	0	0	1	15701	610	22	2		2	TCF19	6	31127384	Silent	SNP	C	TCGA-BP-4167-01A-02D-1386-10		31127384	139987683	15	18652											
FILIP1	27145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	76022977	76022977	+	Silent	SNP	A	A	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	76022977	A	T	76022977	2	4	292	1	0	0	0	0	0	0	0	1	5901	291	11	5		5	FILIP1	6	76022977	Silent	SNP	A	TCGA-BP-4167-01A-02D-1386-10	44895593	76022977	95092090	16	18653											
PPIL4	85313	broad.mit.edu	37	6	149855820	149855820	+	Silent	SNP	T	C	C	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	C	149855820	C	C	149855820	2	2	292	1	0	0	0	0	0	0	0	1	12339	1490	52	3		3	PPIL4	6	149855820	Silent	SNP	T	TCGA-BP-4167-01A-02D-1386-10	73832843	149855820	21259247	17	18654											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152443659	152443659	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	152443659	T	A	152443659	3	1	292	1	0	0	0	0	1	0	0	0	15457	1551	54	5	91	5	SYNE1	6	152443659	Missense_Mutation	SNP	T	TCGA-BP-4167-01A-02D-1386-10	2587839	152443659	18671408	18	18655											
INTS1	26173	broad.mit.edu	37	7	1538900	1538900	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	1538900	G	G	1538900	3	3	292	1	0	0	0	0	1	0	0	0	7782	304	11	3	5799	3	INTS1	7	1538900	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10		1538900	157599763	19	18656											
DGKB	1607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	14378224	14378224	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	14378224	G	A	14378224	4	1	292	1	0	0	0	0	0	1	0	0	4468	1153	40	1	404	1	DGKB	7	14378224	Nonsense_Mutation	SNP	G	TCGA-BP-4167-01A-02D-1386-10	12839324	14378224	144760439	20	18657											
C7orf51	0	broad.mit.edu;hgsc.bcm.edu	37	7	100088627	100088627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	100088627	G	A	100088627	3	1	292	1	0	0	0	0	1	0	0	0	2402	1087	38	1	2195	1	C7orf51	7	100088627	Missense_Mutation	SNP	G	TCGA-BP-4167-01A-02D-1386-10	85710403	100088627	59050036	21	18658											
ASZ1	136991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	117025841	117025841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	117025841	A	G	117025841	3	3	292	1	0	0	0	0	1	0	0	0	1069	391	14	3	1000	3	ASZ1	7	117025841	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	16937214	117025841	42112822	22	18659											
MYST3	0	broad.mit.edu;ucsc.edu	37	8	41791800	41791800	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	C	41791800	C	C	41791800	3	2	292	1	0	0	0	0	1	0	0	0	10111	1667	58	3	2080	3	MYST3	8	41791800	Missense_Mutation	SNP	T	TCGA-BP-4167-01A-02D-1386-10		41791800	104572222	23	18660											
KRTAP5-4	387267	broad.mit.edu;hgsc.bcm.edu	37	11	1643255	1643255	+	Silent	SNP	G	G	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	1643255	G	A	1643255	2	1	292	1	0	0	0	0	0	0	0	1	8570	958	34	2		2	KRTAP5-4	11	1643255	Silent	SNP	G	TCGA-BP-4167-01A-02D-1386-10		1643255	133363261	24	18661											
INSC	387755	hgsc.bcm.edu	37	11	15243190	15243190	+	Silent	SNP	C	C	T	rs61742947	bycluster;byfrequency;by1000genomes	TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	15243190	C	T	15243190	2	4	292	1	0	0	0	0	0	0	0	1	7771	871	31	1		1	INSC	11	15243190	Silent	SNP	C	TCGA-BP-4167-01A-02D-1386-10	13599935	15243190	119763326	25	18662											
ANO3	63982	broad.mit.edu;hgsc.bcm.edu	37	11	26465333	26465333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	26465333	A	G	26465333	3	3	292	1	0	0	0	0	1	0	0	0	698	43	2	3	273	3	ANO3	11	26465333	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	11222143	26465333	108541183	26	18663											
RAG2	5897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	36614945	36614945	+	Silent	SNP	G	G	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	36614945	G	A	36614945	2	1	292	1	0	0	0	0	0	0	0	1	13018	929	33	2		2	RAG2	11	36614945	Silent	SNP	G	TCGA-BP-4167-01A-02D-1386-10	10149612	36614945	98391571	27	18664											
OR5AP2	338675	broad.mit.edu;ucsc.edu	37	11	56409234	56409234	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	56409234	G	G	56409234	3	3	292	1	0	0	0	0	1	0	0	0	11151	72	3	3	272	3	OR5AP2	11	56409234	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	19794289	56409234	78597282	28	18665											
WDR74	54663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62606659	62606659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	62606659	C	T	62606659	3	4	292	1	0	0	0	0	1	0	0	0	17336	855	30	2	973	2	WDR74	11	62606659	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10	6197425	62606659	72399857	29	18666											
PRB1	5542	broad.mit.edu	37	12	11506356	11506356	+	Silent	SNP	G	A	A	rs78796502		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	11506356	A	A	11506356	2	1	292	1	0	0	0	0	0	0	0	1	12452	1306	46	2		2	PRB1	12	11506356	Silent	SNP	G	TCGA-BP-4167-01A-02D-1386-10		11506356	122345539	30	18667											
C12orf60	144608	broad.mit.edu;ucsc.edu	37	12	14976216	14976216	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	14976216	G	G	14976216	3	3	292	1	0	0	0	0	1	0	0	0	1705	14	1	3	349	3	C12orf60	12	14976216	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	3469860	14976216	118875679	31	18668											
ERP27	121506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	15091412	15091412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	15091412	G	T	15091412	3	4	292	1	0	0	0	0	1	0	0	0	5243	1000	35	4	818	4	ERP27	12	15091412	Missense_Mutation	SNP	G	TCGA-BP-4167-01A-02D-1386-10	115196	15091412	118760483	32	18669											
TMTC3	160418	broad.mit.edu;hgsc.bcm.edu	37	12	88589406	88589406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	88589406	C	T	88589406	3	4	292	1	0	0	0	0	1	0	0	0	16274	536	19	1	2775	1	TMTC3	12	88589406	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10	73497994	88589406	45262489	33	18670											
HIP1R	9026	broad.mit.edu	37	12	123343650	123343650	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	123343650	G	G	123343650	3	3	292	1	0	0	0	0	1	0	0	0	7122	304	11	3	2287	3	HIP1R	12	123343650	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	34754244	123343650	10508245	34	18671											
PCK2	5106	broad.mit.edu;ucsc.edu	37	14	24568786	24568786	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	24568786	A	A	24568786	3	1	292	1	0	0	0	0	1	0	0	0	11589	681	24	4	894	4	PCK2	14	24568786	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10		24568786	82780754	35	18672											
ESR2	2100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64746834	64746834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	64746834	C	T	64746834	3	4	292	1	0	0	0	0	1	0	0	0	5259	768	27	1	1306	1	ESR2	14	64746834	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10	40178048	64746834	42602706	36	18673											
GPHN	10243	broad.mit.edu;hgsc.bcm.edu	37	14	67389564	67389564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	67389564	A	G	67389564	3	3	292	1	0	0	0	0	1	0	0	0	6617	304	11	3	664	3	GPHN	14	67389564	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	2642730	67389564	39959976	37	18674											
AHNAK2	113146	hgsc.bcm.edu	37	14	105418155	105418155	+	Silent	SNP	G	G	C	rs141600524	by1000genomes	TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	C	105418155	G	C	105418155	2	2	292	1	0	0	0	0	0	0	0	1	415	1277	45	4		4	AHNAK2	14	105418155	Silent	SNP	G	TCGA-BP-4167-01A-02D-1386-10	38028591	105418155	1931385	38	18675											
JAG2	3714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	105617708	105617708	+	Silent	SNP	C	C	T	rs147768578		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	105617708	C	T	105617708	2	4	292	1	0	0	0	0	0	0	0	1	7942	523	19	1		1	JAG2	14	105617708	Silent	SNP	C	TCGA-BP-4167-01A-02D-1386-10	199553	105617708	1731832	39	18676											
ZNF200	7752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3274074	3274074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	3274074	A	T	3274074	3	4	292	1	0	0	0	0	1	0	0	0	17774	101	4	5	185	5	ZNF200	16	3274074	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10		3274074	87080679	40	18677											
ZNF423	23090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	49672052	49672052	+	Silent	SNP	A	A	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	49672052	A	T	49672052	2	4	292	1	0	0	0	0	0	0	0	1	17910	146	6	5		5	ZNF423	16	49672052	Silent	SNP	A	TCGA-BP-4167-01A-02D-1386-10	46397978	49672052	40682701	41	18678											
RLTPR	146206	broad.mit.edu;ucsc.edu	37	16	67685104	67685104	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	67685104	T	T	67685104	3	4	292	1	0	0	0	0	1	0	0	0	13407	1368	48	4	2289	4	RLTPR	16	67685104	Missense_Mutation	SNP	G	TCGA-BP-4167-01A-02D-1386-10	18013052	67685104	22669649	42	18679											
TEKT3	64518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	15207259	15207259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	C	15207259	G	C	15207259	3	2	292	1	0	0	0	0	1	0	0	0	15766	933	33	4	9	4	TEKT3	17	15207259	Missense_Mutation	SNP	G	TCGA-BP-4167-01A-02D-1386-10		15207259	65987951	43	18680											
CDK3	1018	broad.mit.edu;ucsc.edu	37	17	73999460	73999460	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	73999460	G	G	73999460	3	3	292	1	0	0	0	0	1	0	0	0	3142	304	11	3	795	3	CDK3	17	73999460	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	58792201	73999460	7195750	44	18681											
ZNF519	162655	hgsc.bcm.edu	37	18	14105186	14105186	+	Silent	SNP	T	T	C	rs145376132	bycluster;byfrequency;by1000genomes	TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	C	14105186	T	C	14105186	2	2	292	1	0	0	0	0	0	0	0	1	17976	1838	64	3		3	ZNF519	18	14105186	Silent	SNP	T	TCGA-BP-4167-01A-02D-1386-10		14105186	63972062	45	18682											
CTDP1	9150	hgsc.bcm.edu;ucsc.edu	37	18	77488985	77488985	+	Silent	SNP	T	T	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	77488985	T	A	77488985	2	1	292	1	0	0	0	0	0	0	0	1	4004	1509	53	5		5	CTDP1	18	77488985	Silent	SNP	T	TCGA-BP-4167-01A-02D-1386-10	63383799	77488985	588263	46	18683											
ATCAY	85300	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3905489	3905489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	3905489	C	T	3905489	3	4	292	1	0	0	0	0	1	0	0	0	1077	739	26	2	204	2	ATCAY	19	3905489	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10		3905489	55223494	47	18684											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9072939	9072939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	9072939	C	T	9072939	3	4	292	1	0	0	0	0	1	0	0	0	9980	623	22	2	29344	2	MUC16	19	9072939	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10	5167450	9072939	50056044	48	18685											
USHBP1	83878	broad.mit.edu	37	19	17373404	17373404	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	17373404	A	A	17373404	3	1	292	1	0	0	0	0	1	0	0	0	17049	1174	41	2	1552	2	USHBP1	19	17373404	Missense_Mutation	SNP	G	TCGA-BP-4167-01A-02D-1386-10	8300465	17373404	41755579	49	18686											
ZNF98	148198	broad.mit.edu	37	19	22574754	22574754	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	22574754	G	G	22574754	3	3	292	1	0	0	0	0	1	0	0	0	18215	1464	51	5	439	5	ZNF98	19	22574754	Missense_Mutation	SNP	T	TCGA-BP-4167-01A-02D-1386-10	5201350	22574754	36554229	50	18687											
CIC	23152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42793535	42793535	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	42793535	A	T	42793535	3	4	292	1	0	0	0	0	1	0	0	0	3426	304	11	5	1367	5	CIC	19	42793535	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	20218781	42793535	16335448	51	18688											
PSG5	5673	broad.mit.edu;hgsc.bcm.edu	37	19	43679580	43679580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	43679580	A	G	43679580	3	3	292	1	0	0	0	0	1	0	0	0	12668	362	13	3	264	3	PSG5	19	43679580	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	886045	43679580	15449403	52	18689											
NFS1	9054	broad.mit.edu;hgsc.bcm.edu	37	20	34285610	34285610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	34285610	C	T	34285610	3	4	292	1	0	0	0	0	1	0	0	0	10392	536	19	1	1097	1	NFS1	20	34285610	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10		34285610	28739910	53	18690											
GTSE1	51512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	46712158	46712158	+	Silent	SNP	C	C	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	46712158	C	A	46712158	2	1	292	1	0	0	0	0	0	0	0	1	6892	755	27	4		4	GTSE1	22	46712158	Silent	SNP	C	TCGA-BP-4167-01A-02D-1386-10		46712158	4592408	54	18691											
CELSR1	9620	broad.mit.edu;ucsc.edu	37	22	46807533	46807533	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	46807533	G	G	46807533	3	3	292	1	0	0	0	0	1	0	0	0	3223	188	7	3	4429	3	CELSR1	22	46807533	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	95375	46807533	4497033	55	18692											
TAF7L	54457	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	100532702	100532702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	A	100532702	C	A	100532702	4	1	292	1	0	0	0	0	0	1	0	0	15545	864	30	4	567	4	TAF7L	23	100532702	Nonsense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10		100532702	54737858	56	18693											
GPR101	83550	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	136112680	136112680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	136112680	C	T	136112680	3	4	292	1	0	0	0	0	1	0	0	0	6629	797	28	2	375	2	GPR101	23	136112680	Missense_Mutation	SNP	C	TCGA-BP-4167-01A-02D-1386-10	35579978	136112680	19157880	57	18694											
MAGEC3	139081	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	140953292	140953292	+	Silent	SNP	C	C	T	novel		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	T	140953292	C	T	140953292	2	4	292	1	0	0	0	0	0	0	0	1	9189	668	24	2		2	MAGEC3	23	140953292	Silent	SNP	C	TCGA-BP-4167-01A-02D-1386-10	4840612	140953292	14317268	58	18695											
IL9R	3581	broad.mit.edu	37	X	155239824	155239824	+	Missense_Mutation	SNP	A	G	G	rs3852767		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	155239824	G	G	155239824	3	3	292	1	0	0	0	0	1	0	0	0	7715	43	2	3	1350	3	IL9R	23	155239824	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	14286532	155239824	30736	59	18696	242	2									
IL9R	3581	broad.mit.edu	37	X	155239827	155239827	+	Missense_Mutation	SNP	A	G	G	rs3865220		TCGA-BP-4167-01A-02D-1386-10	TCGA-BP-4167-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79b810e1-4de4-496d-9f70-ab62246e781b	be250c13-93c8-4e95-b0b9-c6a4fce00090	G	155239827	G	G	155239827	3	3	292	1	0	0	0	0	1	0	0	0	7715	43	2	3	1353	3	IL9R	23	155239827	Missense_Mutation	SNP	A	TCGA-BP-4167-01A-02D-1386-10	3	155239827	30733	60	18697	242	2									
SFPQ	6421	hgsc.bcm.edu;ucsc.edu	37	1	35657116	35657116	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	35657116	A	T	35657116	3	4	293	1	0	0	0	0	1	0	0	0	14173	98	4	5	1316	5	SFPQ	1	35657116	Missense_Mutation	SNP	A	TCGA-BP-4169-01A-02D-1366-10		35657116	213593505	1	18698											
COL9A2	1298	hgsc.bcm.edu;ucsc.edu	37	1	40776390	40776390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	40776390	G	A	40776390	3	1	293	1	0	0	0	0	1	0	0	0	3710	1348	47	2	1469	2	COL9A2	1	40776390	Missense_Mutation	SNP	G	TCGA-BP-4169-01A-02D-1366-10	5119274	40776390	208474231	2	18699											
C1orf173	127254	hgsc.bcm.edu	37	1	75102070	75102070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	75102070	A	G	75102070	3	3	293	1	0	0	0	0	1	0	0	0	2016	372	13	3	4131	3	C1orf173	1	75102070	Missense_Mutation	SNP	A	TCGA-BP-4169-01A-02D-1366-10	34325680	75102070	174148551	3	18700											
C1orf14	0	hgsc.bcm.edu	37	1	182869245	182869245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	182869245	C	G	182869245	3	3	293	1	0	0	0	0	1	0	0	0	2002	681	24	4	130	4	C1orf14	1	182869245	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	107767175	182869245	66381376	4	18701											
PLEKHA6	22874	hgsc.bcm.edu;ucsc.edu	37	1	204228767	204228767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	204228767	C	T	204228767	3	4	293	1	0	0	0	0	1	0	0	0	12067	623	22	2	2580	2	PLEKHA6	1	204228767	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	21359522	204228767	45021854	5	18702											
OBSCN	84033	hgsc.bcm.edu;ucsc.edu	37	1	228511298	228511298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	228511298	C	T	228511298	3	4	293	1	0	0	0	0	1	0	0	0	10819	652	23	1	15861	1	OBSCN	1	228511298	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	24282531	228511298	20739323	6	18703											
MYT1L	23040	hgsc.bcm.edu;ucsc.edu	37	2	1921063	1921063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	1921063	C	A	1921063	3	1	293	1	0	0	0	0	1	0	0	0	10114	478	17	4	2088	4	MYT1L	2	1921063	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10		1921063	241278310	7	18704											
SCN2A	6326	hgsc.bcm.edu;ucsc.edu	37	2	166152464	166152464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	166152464	A	G	166152464	3	3	293	1	0	0	0	0	1	0	0	0	13929	304	11	3	133	3	SCN2A	2	166152464	Missense_Mutation	SNP	A	TCGA-BP-4169-01A-02D-1366-10	164231401	166152464	77046909	8	18705											
PER2	8864	hgsc.bcm.edu;ucsc.edu	37	2	239185783	239185783	+	Silent	SNP	T	T	C	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	C	239185783	T	C	239185783	2	2	293	1	0	0	0	0	0	0	0	1	11737	1799	63	3		3	PER2	2	239185783	Silent	SNP	T	TCGA-BP-4169-01A-02D-1366-10	73033319	239185783	4013590	9	18706											
TGFBR2	7048	hgsc.bcm.edu	37	3	30732950	30732950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	30732950	G	T	30732950	3	4	293	1	0	0	0	0	1	0	0	0	15834	1241	43	4	1668	4	TGFBR2	3	30732950	Missense_Mutation	SNP	G	TCGA-BP-4169-01A-02D-1366-10		30732950	167289480	10	18707											
SLC6A20	54716	hgsc.bcm.edu;ucsc.edu	37	3	45817396	45817396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	45817396	A	G	45817396	3	3	293	1	0	0	0	0	1	0	0	0	14697	391	14	3	1371	3	SLC6A20	3	45817396	Missense_Mutation	SNP	A	TCGA-BP-4169-01A-02D-1366-10	15084446	45817396	152205034	11	18708											
KLHDC8B	200942	hgsc.bcm.edu	37	3	49210262	49210262	+	Silent	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	49210262	C	T	49210262	2	4	293	1	0	0	0	0	0	0	0	1	8370	747	26	2		2	KLHDC8B	3	49210262	Silent	SNP	C	TCGA-BP-4169-01A-02D-1366-10	3392866	49210262	148812168	12	18709											
PRKCD	5580	hgsc.bcm.edu	37	3	53223226	53223226	+	Silent	SNP	C	C	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	53223226	C	A	53223226	2	1	293	1	0	0	0	0	0	0	0	1	12519	784	28	4		4	PRKCD	3	53223226	Silent	SNP	C	TCGA-BP-4169-01A-02D-1366-10	4012964	53223226	144799204	13	18710											
CLSTN2	64084	hgsc.bcm.edu	37	3	140140114	140140114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	140140114	A	G	140140114	3	3	293	1	0	0	0	0	1	0	0	0	3564	130	5	3	803	3	CLSTN2	3	140140114	Missense_Mutation	SNP	A	TCGA-BP-4169-01A-02D-1366-10	86916888	140140114	57882316	14	18711											
BCL6	604	hgsc.bcm.edu	37	3	187447718	187447718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	187447718	C	A	187447718	3	1	293	1	0	0	0	0	1	0	0	0	1376	623	22	4	1669	4	BCL6	3	187447718	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	47307604	187447718	10574712	15	18712											
CENPE	1062	hgsc.bcm.edu	37	4	104115562	104115562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	104115562	C	T	104115562	3	4	293	1	0	0	0	0	1	0	0	0	3232	913	32	2	7681	2	CENPE	4	104115562	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10		104115562	87038714	16	18713											
FAT1	2195	hgsc.bcm.edu	37	4	187630234	187630234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	187630234	C	T	187630234	3	4	293	1	0	0	0	0	1	0	0	0	5696	739	26	2	13122	2	FAT1	4	187630234	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	83514672	187630234	3524042	17	18714											
SLC17A1	6568	hgsc.bcm.edu	37	6	25813151	25813151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	C	25813151	T	C	25813151	3	2	293	1	0	0	0	0	1	0	0	0	14429	1696	59	3	618	3	SLC17A1	6	25813151	Missense_Mutation	SNP	T	TCGA-BP-4169-01A-02D-1366-10		25813151	145301916	18	18715											
VPS13A	23230	hgsc.bcm.edu	37	9	79933403	79933403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	79933403	A	G	79933403	3	3	293	1	0	0	0	0	1	0	0	0	17201	101	4	3	5371	3	VPS13A	9	79933403	Missense_Mutation	SNP	A	TCGA-BP-4169-01A-02D-1366-10		79933403	61280028	19	18716											
TBC1D2	55357	hgsc.bcm.edu;ucsc.edu	37	9	100991264	100991264	+	Silent	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	100991264	C	T	100991264	2	4	293	1	0	0	0	0	0	0	0	1	15620	813	29	2		2	TBC1D2	9	100991264	Silent	SNP	C	TCGA-BP-4169-01A-02D-1366-10	21057861	100991264	40222167	20	18717											
TBC1D13	54662	hgsc.bcm.edu	37	9	131570110	131570110	+	Silent	SNP	T	T	C	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	C	131570110	T	C	131570110	2	2	293	1	0	0	0	0	0	0	0	1	15614	1461	51	3		3	TBC1D13	9	131570110	Silent	SNP	T	TCGA-BP-4169-01A-02D-1366-10	30578846	131570110	9643321	21	18718											
SETX	23064	hgsc.bcm.edu;ucsc.edu	37	9	135202859	135202859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	135202859	C	T	135202859	3	4	293	1	0	0	0	0	1	0	0	0	14154	797	28	2	3975	2	SETX	9	135202859	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	3632749	135202859	6010572	22	18719											
ARID5B	84159	hgsc.bcm.edu;ucsc.edu	37	10	63661481	63661481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	63661481	T	G	63661481	3	3	293	1	0	0	0	0	1	0	0	0	922	1551	54	5	15	5	ARID5B	10	63661481	Missense_Mutation	SNP	T	TCGA-BP-4169-01A-02D-1366-10		63661481	71873266	23	18720											
FAM178A	55719	hgsc.bcm.edu	37	10	102676494	102676494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	C	102676494	G	C	102676494	3	2	293	1	0	0	0	0	1	0	0	0	5507	1000	35	4	362	4	FAM178A	10	102676494	Missense_Mutation	SNP	G	TCGA-BP-4169-01A-02D-1366-10	39015013	102676494	32858253	24	18721											
MICAL2	9645	hgsc.bcm.edu;ucsc.edu	37	11	12225972	12225972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	12225972	G	T	12225972	3	4	293	1	0	0	0	0	1	0	0	0	9577	1232	43	4	446	4	MICAL2	11	12225972	Missense_Mutation	SNP	G	TCGA-BP-4169-01A-02D-1366-10		12225972	122780544	25	18722											
MEN1	4221	hgsc.bcm.edu;ucsc.edu	37	11	64577153	64577153	+	Silent	SNP	G	G	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	64577153	G	A	64577153	2	1	293	1	0	0	0	0	0	0	0	1	9479	929	33	2		2	MEN1	11	64577153	Silent	SNP	G	TCGA-BP-4169-01A-02D-1366-10	52351181	64577153	70429363	26	18723											
LALBA	3906	hgsc.bcm.edu;ucsc.edu	37	12	48961740	48961740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	C	48961740	T	C	48961740	3	2	293	1	0	0	0	0	1	0	0	0	8611	1564	54	3	3	3	LALBA	12	48961740	Missense_Mutation	SNP	T	TCGA-BP-4169-01A-02D-1366-10		48961740	84890155	27	18724											
LUM	4060	hgsc.bcm.edu	37	12	91502421	91502421	+	Silent	SNP	G	G	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	91502421	G	A	91502421	2	1	293	1	0	0	0	0	0	0	0	1	9092	933	33	2		2	LUM	12	91502421	Silent	SNP	G	TCGA-BP-4169-01A-02D-1366-10	42540681	91502421	42349474	28	18725											
VEZT	55591	hgsc.bcm.edu;ucsc.edu	37	12	95668544	95668544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	95668544	A	G	95668544	3	3	293	1	0	0	0	0	1	0	0	0	17168	101	4	3	901	3	VEZT	12	95668544	Missense_Mutation	SNP	A	TCGA-BP-4169-01A-02D-1366-10	4166123	95668544	38183351	29	18726											
GLT8D2	83468	hgsc.bcm.edu	37	12	104387250	104387250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	104387250	C	T	104387250	3	4	293	1	0	0	0	0	1	0	0	0	6477	623	22	2	257	2	GLT8D2	12	104387250	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	8718706	104387250	29464645	30	18727											
DNAH10	196385	hgsc.bcm.edu;ucsc.edu	37	12	124416606	124416606	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	C	124416606	G	C	124416606	3	2	293	1	0	0	0	0	1	0	0	0	4600	1174	41	4	13191	4	DNAH10	12	124416606	Missense_Mutation	SNP	G	TCGA-BP-4169-01A-02D-1366-10	20029356	124416606	9435289	31	18728											
F7	2155	hgsc.bcm.edu	37	13	113769996	113769996	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	113769996	T	A	113769996	4	1	293	1	0	0	0	0	0	1	0	0	5351	1702	59	5	475	5	F7	13	113769996	Nonsense_Mutation	SNP	T	TCGA-BP-4169-01A-02D-1366-10		113769996	1399882	32	18729											
OR10G3	26533	hgsc.bcm.edu	37	14	22038054	22038054	+	Silent	SNP	G	G	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	22038054	G	A	22038054	2	1	293	1	0	0	0	0	0	0	0	1	10907	1219	43	2		2	OR10G3	14	22038054	Silent	SNP	G	TCGA-BP-4169-01A-02D-1366-10		22038054	85311486	33	18730											
CHRM5	1133	hgsc.bcm.edu;ucsc.edu	37	15	34356453	34356453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	34356453	G	A	34356453	3	1	293	1	0	0	0	0	1	0	0	0	3382	1319	46	2	1537	2	CHRM5	15	34356453	Missense_Mutation	SNP	G	TCGA-BP-4169-01A-02D-1366-10		34356453	68174939	34	18731											
SCAPER	49855	hgsc.bcm.edu;ucsc.edu	37	15	77096926	77096926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	C	77096926	T	C	77096926	3	2	293	1	0	0	0	0	1	0	0	0	13891	1435	50	3	3906	3	SCAPER	15	77096926	Missense_Mutation	SNP	T	TCGA-BP-4169-01A-02D-1366-10	42740473	77096926	25434466	35	18732											
LASS3	0	hgsc.bcm.edu;ucsc.edu	37	15	101031104	101031104	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	101031104	C	G	101031104	3	3	293	1	0	0	0	0	1	0	0	0	8647	739	26	4	981	4	LASS3	15	101031104	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	23934178	101031104	1500288	36	18733											
NETO2	81831	hgsc.bcm.edu;ucsc.edu	37	16	47165915	47165915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	47165915	A	G	47165915	3	3	293	1	0	0	0	0	1	0	0	0	10347	391	14	3	1553	3	NETO2	16	47165915	Missense_Mutation	SNP	A	TCGA-BP-4169-01A-02D-1366-10		47165915	43188838	37	18734											
CHD9	80205	hgsc.bcm.edu	37	16	53358033	53358033	+	Silent	SNP	G	G	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	53358033	G	A	53358033	2	1	293	1	0	0	0	0	0	0	0	1	3334	991	35	2		2	CHD9	16	53358033	Silent	SNP	G	TCGA-BP-4169-01A-02D-1366-10	6192118	53358033	36996720	38	18735											
NEURL4	84461	hgsc.bcm.edu;ucsc.edu	37	17	7224890	7224890	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	G	7224890	C	G	7224890	3	3	293	1	0	0	0	0	1	0	0	0	10354	922	32	4	1648	4	NEURL4	17	7224890	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10		7224890	73970320	39	18736											
KSR1	8844	hgsc.bcm.edu;ucsc.edu	37	17	25919598	25919598	+	Silent	SNP	G	G	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	25919598	G	T	25919598	2	4	293	1	0	0	0	0	0	0	0	1	8588	1335	47	4		4	KSR1	17	25919598	Silent	SNP	G	TCGA-BP-4169-01A-02D-1366-10	18694708	25919598	55275612	40	18737											
NDUFV2	4729	hgsc.bcm.edu	37	18	9117867	9117867	+	Missense_Mutation	SNP	T	T	C	rs906807	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	C	9117867	T	C	9117867	3	2	293	1	0	0	0	0	1	0	0	0	10307	1725	60	3	92	3	NDUFV2	18	9117867	Missense_Mutation	SNP	T	TCGA-BP-4169-01A-02D-1366-10		9117867	68959381	41	18738											
MAPK4	5596	hgsc.bcm.edu	37	18	48190484	48190484	+	Silent	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	48190484	C	T	48190484	2	4	293	1	0	0	0	0	0	0	0	1	9287	610	22	2		2	MAPK4	18	48190484	Silent	SNP	C	TCGA-BP-4169-01A-02D-1366-10	39072617	48190484	29886764	42	18739											
MALT1	10892	hgsc.bcm.edu;ucsc.edu	37	18	56414818	56414818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	56414818	C	T	56414818	3	4	293	1	0	0	0	0	1	0	0	0	9209	913	32	2	2285	2	MALT1	18	56414818	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	8224334	56414818	21662430	43	18740											
CDH22	64405	hgsc.bcm.edu	37	20	44869833	44869833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	44869833	C	A	44869833	3	1	293	1	0	0	0	0	1	0	0	0	3109	594	21	4	2207	4	CDH22	20	44869833	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10		44869833	18155687	44	18741											
CSF2RB	1439	hgsc.bcm.edu	37	22	37334375	37334375	+	Missense_Mutation	SNP	C	C	T	rs147019788		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	T	37334375	C	T	37334375	3	4	293	1	0	0	0	0	1	0	0	0	3937	652	23	1	2575	1	CSF2RB	22	37334375	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10		37334375	13970191	45	18742											
CARD10	29775	hgsc.bcm.edu	37	22	37891824	37891824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	37891824	C	A	37891824	3	1	293	1	0	0	0	0	1	0	0	0	2646	652	23	4	880	4	CARD10	22	37891824	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10	557449	37891824	13412742	46	18743											
FMR1	2332	hgsc.bcm.edu;ucsc.edu	37	X	147030317	147030317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c5132145-355e-49d3-b6cd-2a8ba2daaa39	658defa0-ce93-475f-978e-9494b4b619d7	A	147030317	C	A	147030317	3	1	293	1	0	0	0	0	1	0	0	0	5967	739	26	4	1918	4	FMR1	23	147030317	Missense_Mutation	SNP	C	TCGA-BP-4169-01A-02D-1366-10		147030317	8240243	47	18744											
NBPF3	84224	hgsc.bcm.edu	37	1	21808126	21808126	+	Silent	SNP	G	G	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	21808126	G	A	21808126	2	1	294	1	0	0	0	0	0	0	0	1	10204	991	35	2		2	NBPF3	1	21808126	Silent	SNP	G	TCGA-BP-4170-01A-02D-1366-10		21808126	227442495	1	18745											
COL16A1	1307	hgsc.bcm.edu	37	1	32146505	32146505	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	32146505	C	T	32146505	5	4	294	1	0	0	0	0	0	0	1	0	3675	521	18	2	2335	2	COL16A1	1	32146505	Splice_Site	SNP	C	TCGA-BP-4170-01A-02D-1366-10	10338379	32146505	217104116	2	18746											
KIRREL	55243	hgsc.bcm.edu;ucsc.edu	37	1	158054231	158054231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	C	158054231	G	C	158054231	3	2	294	1	0	0	0	0	1	0	0	0	8331	1165	41	4	386	4	KIRREL	1	158054231	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10	125907726	158054231	91196390	3	18747											
CHIT1	1118	hgsc.bcm.edu;ucsc.edu	37	1	203188447	203188447	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	203188447	C	T	203188447	4	4	294	1	0	0	0	0	0	1	0	0	3348	595	21	2	486	2	CHIT1	1	203188447	Nonsense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10	45134216	203188447	46062174	4	18748											
PXDN	7837	hgsc.bcm.edu;ucsc.edu	37	2	1667443	1667443	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	1667443	C	A	1667443	4	1	294	1	0	0	0	0	0	1	0	0	12860	893	31	4	2986	4	PXDN	2	1667443	Nonsense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10		1667443	241531930	5	18749											
SF3B1	23451	hgsc.bcm.edu	37	2	198266833	198266833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	C	198266833	T	C	198266833	3	2	294	1	0	0	0	0	1	0	0	0	14162	1841	64	3	1859	3	SF3B1	2	198266833	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10	196599390	198266833	44932540	6	18750											
AOX1	316	hgsc.bcm.edu;ucsc.edu	37	2	201488671	201488671	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	201488671	T	A	201488671	3	1	294	1	0	0	0	0	1	0	0	0	729	1522	53	5	2163	5	AOX1	2	201488671	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10	3221838	201488671	41710702	7	18751											
TRIM42	287015	hgsc.bcm.edu;ucsc.edu	37	3	140407023	140407023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	140407023	C	T	140407023	3	4	294	1	0	0	0	0	1	0	0	0	16529	838	29	2	1509	2	TRIM42	3	140407023	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10		140407023	57615407	8	18752											
C4orf14	0	hgsc.bcm.edu;ucsc.edu	37	4	57834621	57834621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	57834621	G	A	57834621	3	1	294	1	0	0	0	0	1	0	0	0	2253	1174	41	2	536	2	C4orf14	4	57834621	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10		57834621	133319655	9	18753											
SULT1B1	27284	hgsc.bcm.edu	37	4	70599939	70599939	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	70599939	T	A	70599939	3	1	294	1	0	0	0	0	1	0	0	0	15388	1406	49	5	487	5	SULT1B1	4	70599939	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10	12765318	70599939	120554337	10	18754											
ADAMTS16	170690	hgsc.bcm.edu;ucsc.edu	37	5	5187899	5187899	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	5187899	T	A	5187899	3	1	294	1	0	0	0	0	1	0	0	0	261	1580	55	5	1047	5	ADAMTS16	5	5187899	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10		5187899	175727361	11	18755											
APC	324	hgsc.bcm.edu;ucsc.edu	37	5	112174812	112174812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	112174812	A	G	112174812	3	3	294	1	0	0	0	0	1	0	0	0	763	333	12	3	3579	3	APC	5	112174812	Missense_Mutation	SNP	A	TCGA-BP-4170-01A-02D-1366-10	106986913	112174812	68740448	12	18756											
ZNF300	91975	hgsc.bcm.edu	37	5	150276155	150276155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	150276155	A	G	150276155	3	3	294	1	0	0	0	0	1	0	0	0	17843	14	1	3	1172	3	ZNF300	5	150276155	Missense_Mutation	SNP	A	TCGA-BP-4170-01A-02D-1366-10	38101343	150276155	30639105	13	18757											
KIAA0319	9856	hgsc.bcm.edu;ucsc.edu	37	6	24547461	24547461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	24547461	G	A	24547461	3	1	294	1	0	0	0	0	1	0	0	0	8175	1174	41	2	71	2	KIAA0319	6	24547461	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10		24547461	146567606	14	18758											
NOTCH4	4855	hgsc.bcm.edu	37	6	32188642	32188642	+	Silent	SNP	T	T	C	rs520688	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	C	32188642	T	C	32188642	2	2	294	1	0	0	0	0	0	0	0	1	10558	1567	55	3		3	NOTCH4	6	32188642	Silent	SNP	T	TCGA-BP-4170-01A-02D-1366-10	7641181	32188642	138926425	15	18759											
REV3L	5980	hgsc.bcm.edu;ucsc.edu	37	6	111711296	111711296	+	Silent	SNP	G	G	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	111711296	G	A	111711296	2	1	294	1	0	0	0	0	0	0	0	1	13253	1368	48	2		2	REV3L	6	111711296	Silent	SNP	G	TCGA-BP-4170-01A-02D-1366-10	79522654	111711296	59403771	16	18760											
ARHGAP18	93663	hgsc.bcm.edu	37	6	129963095	129963095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	129963095	A	G	129963095	3	3	294	1	0	0	0	0	1	0	0	0	868	14	1	3	1865	3	ARHGAP18	6	129963095	Missense_Mutation	SNP	A	TCGA-BP-4170-01A-02D-1366-10	18251799	129963095	41151972	17	18761											
GET4	51608	hgsc.bcm.edu	37	7	925701	925701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	925701	C	T	925701	3	4	294	1	0	0	0	0	1	0	0	0	6343	855	30	2	170	2	GET4	7	925701	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10		925701	158212962	18	18762											
AHR	196	hgsc.bcm.edu;ucsc.edu	37	7	17382681	17382681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	17382681	T	A	17382681	3	1	294	1	0	0	0	0	1	0	0	0	416	1783	62	5	2582	5	AHR	7	17382681	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10	16456980	17382681	141755982	19	18763											
HERPUD2	64224	hgsc.bcm.edu	37	7	35712843	35712843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	35712843	C	T	35712843	3	4	294	1	0	0	0	0	1	0	0	0	7071	884	31	1	1055	1	HERPUD2	7	35712843	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10	18330162	35712843	123425820	20	18764											
MYO1G	64005	hgsc.bcm.edu;ucsc.edu	37	7	45011770	45011770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	45011770	G	A	45011770	3	1	294	1	0	0	0	0	1	0	0	0	10081	1232	43	2	2451	2	MYO1G	7	45011770	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10	9298927	45011770	114126893	21	18765											
CFTR	1080	hgsc.bcm.edu	37	7	117170982	117170982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	117170982	A	T	117170982	3	4	294	1	0	0	0	0	1	0	0	0	3296	388	14	5	317	5	CFTR	7	117170982	Missense_Mutation	SNP	A	TCGA-BP-4170-01A-02D-1366-10	72159212	117170982	41967681	22	18766											
DUSP4	1846	hgsc.bcm.edu	37	8	29197736	29197736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	C	29197736	T	C	29197736	3	2	294	1	0	0	0	0	1	0	0	0	4829	1551	54	3	738	3	DUSP4	8	29197736	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10		29197736	117166286	23	18767											
RUNX1T1	862	hgsc.bcm.edu;ucsc.edu	37	8	93027007	93027007	+	Missense_Mutation	SNP	C	C	T	rs150073605	byfrequency	TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	93027007	C	T	93027007	3	4	294	1	0	0	0	0	1	0	0	0	13760	768	27	1	1582	1	RUNX1T1	8	93027007	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10	63829271	93027007	53337015	24	18768											
CSMD3	114788	hgsc.bcm.edu;ucsc.edu	37	8	113326746	113326746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	113326746	G	T	113326746	3	4	294	1	0	0	0	0	1	0	0	0	3948	1310	46	4	3758	4	CSMD3	8	113326746	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10	20299739	113326746	33037276	25	18769											
MAPK15	225689	hgsc.bcm.edu	37	8	144801567	144801567	+	Silent	SNP	G	G	C	rs140965473	byfrequency	TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	C	144801567	G	C	144801567	2	2	294	1	0	0	0	0	0	0	0	1	9284	1306	46	4		4	MAPK15	8	144801567	Silent	SNP	G	TCGA-BP-4170-01A-02D-1366-10	31474821	144801567	1562455	26	18770											
POMT1	10585	hgsc.bcm.edu	37	9	134385419	134385419	+	Silent	SNP	C	C	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	134385419	C	G	134385419	2	3	294	1	0	0	0	0	0	0	0	1	12252	668	24	4		4	POMT1	9	134385419	Silent	SNP	C	TCGA-BP-4170-01A-02D-1366-10		134385419	6828012	27	18771											
WDR85	92715	hgsc.bcm.edu;ucsc.edu	37	9	140449899	140449899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	140449899	T	G	140449899	3	3	294	1	0	0	0	0	1	0	0	0	17345	1725	60	5	211	5	WDR85	9	140449899	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10	6064480	140449899	763532	28	18772											
KIF20B	9585	hgsc.bcm.edu	37	10	91532538	91532538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	91532538	A	G	91532538	3	3	294	1	0	0	0	0	1	0	0	0	8294	247	9	3	5337	3	KIF20B	10	91532538	Missense_Mutation	SNP	A	TCGA-BP-4170-01A-02D-1366-10		91532538	44002209	29	18773											
TUBGCP2	10844	hgsc.bcm.edu;ucsc.edu	37	10	135102393	135102393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	135102393	C	T	135102393	3	4	294	1	0	0	0	0	1	0	0	0	16778	507	18	2	1252	2	TUBGCP2	10	135102393	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10	43569855	135102393	432354	30	18774											
AMPD3	272	hgsc.bcm.edu;ucsc.edu	37	11	10516458	10516458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	10516458	T	A	10516458	3	1	294	1	0	0	0	0	1	0	0	0	587	1493	52	5	1224	5	AMPD3	11	10516458	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10		10516458	124490058	31	18775											
BIRC2	329	hgsc.bcm.edu;ucsc.edu	37	11	102221130	102221130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	102221130	G	A	102221130	3	1	294	1	0	0	0	0	1	0	0	0	1435	1029	36	2	547	2	BIRC2	11	102221130	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10	91704672	102221130	32785386	32	18776											
UBASH3B	84959	hgsc.bcm.edu;ucsc.edu	37	11	122665475	122665475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	122665475	G	A	122665475	3	1	294	1	0	0	0	0	1	0	0	0	16852	1000	35	2	1072	2	UBASH3B	11	122665475	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10	20444345	122665475	12341041	33	18777											
ARID2	196528	hgsc.bcm.edu;ucsc.edu	37	12	46230714	46230714	+	Silent	SNP	T	T	C	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	C	46230714	T	C	46230714	2	2	294	1	0	0	0	0	0	0	0	1	915	1403	49	3		3	ARID2	12	46230714	Silent	SNP	T	TCGA-BP-4170-01A-02D-1366-10		46230714	87621181	34	18778											
ELF1	1997	hgsc.bcm.edu	37	13	41517220	41517220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	41517220	G	T	41517220	3	4	294	1	0	0	0	0	1	0	0	0	5055	1000	35	4	1197	4	ELF1	13	41517220	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10		41517220	73652658	35	18779											
DACH1	1602	hgsc.bcm.edu;ucsc.edu	37	13	72049972	72049972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	C	72049972	T	C	72049972	3	2	294	1	0	0	0	0	1	0	0	0	4222	1812	63	3	252	3	DACH1	13	72049972	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10	30532752	72049972	43119906	36	18780											
TEP1	7011	hgsc.bcm.edu	37	14	20864842	20864842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	20864842	G	T	20864842	3	4	294	1	0	0	0	0	1	0	0	0	15771	991	35	4	6470	4	TEP1	14	20864842	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10		20864842	86484698	37	18781											
CGRRF1	10668	hgsc.bcm.edu;ucsc.edu	37	14	54996813	54996813	+	Silent	SNP	A	A	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	54996813	A	G	54996813	2	3	294	1	0	0	0	0	0	0	0	1	3308	204	8	3		3	CGRRF1	14	54996813	Silent	SNP	A	TCGA-BP-4170-01A-02D-1366-10	34131971	54996813	52352727	38	18782											
TMEM229B	161145	hgsc.bcm.edu	37	14	67940219	67940219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	67940219	C	T	67940219	3	4	294	1	0	0	0	0	1	0	0	0	16160	768	27	1	85	1	TMEM229B	14	67940219	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10	12943406	67940219	39409321	39	18783											
MTMR15	0	hgsc.bcm.edu	37	15	31221493	31221493	+	Missense_Mutation	SNP	C	C	T	rs80120912	bycluster;byfrequency;by1000genomes	TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	31221493	C	T	31221493	3	4	294	1	0	0	0	0	1	0	0	0	9950	623	22	2	2747	2	MTMR15	15	31221493	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10		31221493	71309899	40	18784											
PLA2G4E	123745	hgsc.bcm.edu	37	15	42292364	42292364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	42292364	A	G	42292364	3	3	294	1	0	0	0	0	1	0	0	0	12012	420	15	3	1868	3	PLA2G4E	15	42292364	Missense_Mutation	SNP	A	TCGA-BP-4170-01A-02D-1366-10	11070871	42292364	60239028	41	18785											
GINS3	64785	hgsc.bcm.edu	37	16	58437163	58437163	+	Silent	SNP	C	C	T	rs186469314		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	58437163	C	T	58437163	2	4	294	1	0	0	0	0	0	0	0	1	6396	912	32	2		2	GINS3	16	58437163	Silent	SNP	C	TCGA-BP-4170-01A-02D-1366-10		58437163	31917590	42	18786											
GPR172B	0	hgsc.bcm.edu	37	17	4937083	4937083	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	4937083	T	G	4937083	3	3	294	1	0	0	0	0	1	0	0	0	6677	1812	63	5	657	5	GPR172B	17	4937083	Missense_Mutation	SNP	T	TCGA-BP-4170-01A-02D-1366-10		4937083	76258127	43	18787											
PIGL	9487	hgsc.bcm.edu;ucsc.edu	37	17	16221127	16221127	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	G	16221127	C	G	16221127	3	3	294	1	0	0	0	0	1	0	0	0	11898	768	27	4	587	4	PIGL	17	16221127	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10	11284044	16221127	64974083	44	18788											
ZPBP2	124626	hgsc.bcm.edu;ucsc.edu	37	17	38032946	38032946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	38032946	C	T	38032946	3	4	294	1	0	0	0	0	1	0	0	0	18232	855	30	2	931	2	ZPBP2	17	38032946	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10	21811819	38032946	43162264	45	18789											
KIF18B	146909	hgsc.bcm.edu	37	17	43011388	43011388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	43011388	G	A	43011388	3	1	294	1	0	0	0	0	1	0	0	0	8288	1377	48	2	1641	2	KIF18B	17	43011388	Missense_Mutation	SNP	G	TCGA-BP-4170-01A-02D-1366-10	4978442	43011388	38183822	46	18790											
MPO	4353	hgsc.bcm.edu;ucsc.edu	37	17	56350802	56350802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	C	56350802	A	C	56350802	3	2	294	1	0	0	0	0	1	0	0	0	9739	14	1	5	659	5	MPO	17	56350802	Missense_Mutation	SNP	A	TCGA-BP-4170-01A-02D-1366-10	13339414	56350802	24844408	47	18791											
SIGLEC12	89858	hgsc.bcm.edu;ucsc.edu	37	19	52000158	52000158	+	Silent	SNP	G	G	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	52000158	G	A	52000158	2	1	294	1	0	0	0	0	0	0	0	1	14321	1136	40	1		1	SIGLEC12	19	52000158	Silent	SNP	G	TCGA-BP-4170-01A-02D-1366-10		52000158	7128825	48	18792											
ACOT8	10005	hgsc.bcm.edu	37	20	44483907	44483907	+	Silent	SNP	G	G	T	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	T	44483907	G	T	44483907	2	4	294	1	0	0	0	0	0	0	0	1	156	1335	47	4		4	ACOT8	20	44483907	Silent	SNP	G	TCGA-BP-4170-01A-02D-1366-10		44483907	18541613	49	18793											
USP18	11274	hgsc.bcm.edu	37	22	18640565	18640565	+	Silent	SNP	C	C	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	18640565	C	A	18640565	2	1	294	1	0	0	0	0	0	0	0	1	17061	581	21	4		4	USP18	22	18640565	Silent	SNP	C	TCGA-BP-4170-01A-02D-1366-10		18640565	32664001	50	18794											
CLDN2	9075	hgsc.bcm.edu	37	X	106171625	106171625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	A	106171625	C	A	106171625	3	1	294	1	0	0	0	0	1	0	0	0	3483	478	17	4	169	4	CLDN2	23	106171625	Missense_Mutation	SNP	C	TCGA-BP-4170-01A-02D-1366-10		106171625	49098935	51	18795											
HTATSF1	27336	hgsc.bcm.edu;ucsc.edu	37	X	135581831	135581831	+	Silent	SNP	A	A	C	novel		TCGA-BP-4170-01A-02D-1366-10	TCGA-BP-4170-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	16fcd199-55bc-4415-95cf-2a3d0b2d4b1b	021c1ab3-d01f-45ce-9fe5-ed2731e73f12	C	135581831	A	C	135581831	2	2	294	1	0	0	0	0	0	0	0	1	7440	117	5	5		5	HTATSF1	23	135581831	Silent	SNP	A	TCGA-BP-4170-01A-02D-1366-10	29410206	135581831	19688729	52	18796											
ASPM	259266	hgsc.bcm.edu	37	1	197055989	197055989	+	Silent	SNP	A	A	G	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	G	197055989	A	G	197055989	2	3	295	1	0	0	0	0	0	0	0	1	1056	59	3	3		3	ASPM	1	197055989	Silent	SNP	A	TCGA-BP-4173-01A-02D-1366-10		197055989	52194632	1	18797											
KCNH1	3756	hgsc.bcm.edu	37	1	210857394	210857394	+	Silent	SNP	C	C	T	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	T	210857394	C	T	210857394	2	4	295	1	0	0	0	0	0	0	0	1	8038	639	23	1		1	KCNH1	1	210857394	Silent	SNP	C	TCGA-BP-4173-01A-02D-1366-10	13801405	210857394	38393227	2	18798											
AIDA	64853	hgsc.bcm.edu	37	1	222843559	222843559	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	A	222843559	T	A	222843559	3	1	295	1	0	0	0	0	1	0	0	0	423	1609	56	5	188	5	AIDA	1	222843559	Missense_Mutation	SNP	T	TCGA-BP-4173-01A-02D-1366-10	11986165	222843559	26407062	3	18799											
UPP2	151531	hgsc.bcm.edu	37	2	158958551	158958551	+	Splice_Site	SNP	G	G	A	rs74924675		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	A	158958551	G	A	158958551	5	1	295	1	0	0	0	0	0	0	1	0	17025	1014	35	2	157	2	UPP2	2	158958551	Splice_Site	SNP	G	TCGA-BP-4173-01A-02D-1366-10		158958551	84240822	4	18800											
NCR2	9436	hgsc.bcm.edu	37	6	41304036	41304036	+	Silent	SNP	T	T	C	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	C	41304036	T	C	41304036	2	2	295	1	0	0	0	0	0	0	0	1	10245	1461	51	3		3	NCR2	6	41304036	Silent	SNP	T	TCGA-BP-4173-01A-02D-1366-10		41304036	129811031	5	18801											
GRM8	2918	hgsc.bcm.edu	37	7	126173363	126173363	+	Silent	SNP	A	A	G	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	G	126173363	A	G	126173363	2	3	295	1	0	0	0	0	0	0	0	1	6810	272	10	3		3	GRM8	7	126173363	Silent	SNP	A	TCGA-BP-4173-01A-02D-1366-10		126173363	32965300	6	18802											
KRT4	3851	hgsc.bcm.edu	37	12	53207990	53207990	+	Silent	SNP	G	G	A	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	A	53207990	G	A	53207990	2	1	295	1	0	0	0	0	0	0	0	1	8484	1335	47	2		2	KRT4	12	53207990	Silent	SNP	G	TCGA-BP-4173-01A-02D-1366-10		53207990	80643905	7	18803											
OR6C1	390321	hgsc.bcm.edu	37	12	55714409	55714410	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	G	55714410	-	G	55714409	7	5	295	1	0	1	1	0	0	0	0	0	11197	304	11	0	28	0	OR6C1	12	55714409	Frame_Shift_Ins	INS	-	TCGA-BP-4173-01A-02D-1366-10	2506419	55714409	78137486	8	18804											
SLC12A1	6557	hgsc.bcm.edu;ucsc.edu	37	15	48521422	48521422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	T	48521422	C	T	48521422	3	4	295	1	0	0	0	0	1	0	0	0	14395	623	22	2	879	2	SLC12A1	15	48521422	Missense_Mutation	SNP	C	TCGA-BP-4173-01A-02D-1366-10		48521422	54009970	9	18805											
NLRC3	197358	hgsc.bcm.edu	37	16	3614350	3614350	+	Silent	SNP	C	C	T	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	T	3614350	C	T	3614350	2	4	295	1	0	0	0	0	0	0	0	1	10475	639	23	1		1	NLRC3	16	3614350	Silent	SNP	C	TCGA-BP-4173-01A-02D-1366-10		3614350	86740403	10	18806											
RABEP2	79874	hgsc.bcm.edu	37	16	28922429	28922429	+	Silent	SNP	C	C	T	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	T	28922429	C	T	28922429	2	4	295	1	0	0	0	0	0	0	0	1	12975	842	30	2		2	RABEP2	16	28922429	Silent	SNP	C	TCGA-BP-4173-01A-02D-1366-10	25308079	28922429	61432324	11	18807											
TEX2	55852	hgsc.bcm.edu	37	17	62291518	62291518	+	Silent	SNP	G	G	A	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	A	62291518	G	A	62291518	2	1	295	1	0	0	0	0	0	0	0	1	15793	1219	43	2		2	TEX2	17	62291518	Silent	SNP	G	TCGA-BP-4173-01A-02D-1366-10		62291518	18903692	12	18808											
STX10	8677	hgsc.bcm.edu;ucsc.edu	37	19	13260576	13260576	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	C	13260576	G	C	13260576	3	2	295	1	0	0	0	0	1	0	0	0	15348	1048	37	4	605	4	STX10	19	13260576	Missense_Mutation	SNP	G	TCGA-BP-4173-01A-02D-1366-10		13260576	45868407	13	18809											
CEBPA	1050	hgsc.bcm.edu	37	19	33792387	33792387	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	A	33792387	G	A	33792387	4	1	295	1	0	0	0	0	0	1	0	0	3201	1328	46	2	146	2	CEBPA	19	33792387	Nonsense_Mutation	SNP	G	TCGA-BP-4173-01A-02D-1366-10	20531811	33792387	25336596	14	18810											
CAPN12	147968	hgsc.bcm.edu;ucsc.edu	37	19	39225512	39225512	+	Splice_Site	SNP	T	T	A	novel		TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	A	39225512	T	A	39225512	5	1	295	1	0	0	0	0	0	0	1	0	2627	1536	53	5	502	5	CAPN12	19	39225512	Splice_Site	SNP	T	TCGA-BP-4173-01A-02D-1366-10	5433125	39225512	19903471	15	18811											
ASXL1	171023	hgsc.bcm.edu	37	20	31024481	31024481	+	Silent	SNP	G	G	T	rs147326327	alternate_allele	TCGA-BP-4173-01A-02D-1366-10	TCGA-BP-4173-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	778685b3-ff34-4f6f-adcf-52c9890ce179	3dda6e59-7c67-4113-81a7-f7cbc31cffa3	T	31024481	G	T	31024481	2	4	295	1	0	0	0	0	0	0	0	1	1066	1045	37	4		4	ASXL1	20	31024481	Silent	SNP	G	TCGA-BP-4173-01A-02D-1366-10		31024481	32001039	16	18812											
HMCN1	83872	ucsc.edu	37	1	185958692	185958692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	185958692	C	A	185958692	3	1	296	1	0	0	0	0	1	0	0	0	7227	507	18	4	3203	4	HMCN1	1	185958692	Missense_Mutation	SNP	C	TCGA-BP-4174-01A-02D-1366-10		185958692	63291929	1	18813											
C1orf107	0	hgsc.bcm.edu	37	1	210010524	210010524	+	Missense_Mutation	SNP	G	G	A	rs41274840	bycluster;byfrequency;by1000genomes	TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	210010524	G	A	210010524	3	1	296	1	0	0	0	0	1	0	0	0	1983	1290	45	2	1052	2	C1orf107	1	210010524	Missense_Mutation	SNP	G	TCGA-BP-4174-01A-02D-1366-10	24051832	210010524	39240097	2	18814											
CENPF	1063	hgsc.bcm.edu	37	1	214818442	214818442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	G	214818442	T	G	214818442	3	3	296	1	0	0	0	0	1	0	0	0	3233	1693	59	5	5575	5	CENPF	1	214818442	Missense_Mutation	SNP	T	TCGA-BP-4174-01A-02D-1366-10	4807918	214818442	34432179	3	18815											
TPO	7173	hgsc.bcm.edu	37	2	1500518	1500518	+	Silent	SNP	C	C	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	1500518	C	T	1500518	2	4	296	1	0	0	0	0	0	0	0	1	16422	854	30	2		2	TPO	2	1500518	Silent	SNP	C	TCGA-BP-4174-01A-02D-1366-10		1500518	241698855	4	18816											
APOB	338	hgsc.bcm.edu;ucsc.edu	37	2	21227505	21227505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	C	21227505	T	C	21227505	3	2	296	1	0	0	0	0	1	0	0	0	785	1609	56	3	1872	3	APOB	2	21227505	Missense_Mutation	SNP	T	TCGA-BP-4174-01A-02D-1366-10	19726987	21227505	221971868	5	18817											
SEMA4C	54910	hgsc.bcm.edu	37	2	97526749	97526749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	97526749	C	A	97526749	3	1	296	1	0	0	0	0	1	0	0	0	14046	507	18	4	389	4	SEMA4C	2	97526749	Missense_Mutation	SNP	C	TCGA-BP-4174-01A-02D-1366-10	76299244	97526749	145672624	6	18818											
DPP10	57628	hgsc.bcm.edu;ucsc.edu	37	2	116510852	116510852	+	Silent	SNP	C	C	G	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	G	116510852	C	G	116510852	2	3	296	1	0	0	0	0	0	0	0	1	4729	581	21	4		4	DPP10	2	116510852	Silent	SNP	C	TCGA-BP-4174-01A-02D-1366-10	18984103	116510852	126688521	7	18819											
NEB	4703	hgsc.bcm.edu;ucsc.edu	37	2	152552137	152552137	+	Silent	SNP	A	A	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	152552137	A	T	152552137	2	4	296	1	0	0	0	0	0	0	0	1	10309	291	11	5		5	NEB	2	152552137	Silent	SNP	A	TCGA-BP-4174-01A-02D-1366-10	36041285	152552137	90647236	8	18820											
CCDC108	255101	hgsc.bcm.edu;ucsc.edu	37	2	219875305	219875305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	C	219875305	T	C	219875305	3	2	296	1	0	0	0	0	1	0	0	0	2745	1725	60	3	1546	3	CCDC108	2	219875305	Missense_Mutation	SNP	T	TCGA-BP-4174-01A-02D-1366-10	67323168	219875305	23324068	9	18821											
OBSL1	23363	hgsc.bcm.edu	37	2	220431631	220431631	+	Silent	SNP	G	G	T	rs1043537	bycluster;byfrequency;by1000genomes	TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	220431631	G	T	220431631	2	4	296	1	0	0	0	0	0	0	0	1	10820	1103	39	4		4	OBSL1	2	220431631	Silent	SNP	G	TCGA-BP-4174-01A-02D-1366-10	556326	220431631	22767742	10	18822											
TLR9	54106	hgsc.bcm.edu;ucsc.edu	37	3	52256548	52256548	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	52256548	A	T	52256548	3	4	296	1	0	0	0	0	1	0	0	0	15970	304	11	5	1318	5	TLR9	3	52256548	Missense_Mutation	SNP	A	TCGA-BP-4174-01A-02D-1366-10		52256548	145765882	11	18823											
GATA2	2624	hgsc.bcm.edu	37	3	128204641	128204641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	128204641	G	A	128204641	3	1	296	1	0	0	0	0	1	0	0	0	6261	1232	43	2	658	2	GATA2	3	128204641	Missense_Mutation	SNP	G	TCGA-BP-4174-01A-02D-1366-10	75948093	128204641	69817789	12	18824											
DBR1	51163	hgsc.bcm.edu	37	3	137893493	137893493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	137893493	G	T	137893493	3	4	296	1	0	0	0	0	1	0	0	0	4259	933	33	4	1521	4	DBR1	3	137893493	Missense_Mutation	SNP	G	TCGA-BP-4174-01A-02D-1366-10	9688852	137893493	60128937	13	18825											
ELOVL7	79993	hgsc.bcm.edu;ucsc.edu	37	5	60050500	60050500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	60050500	C	T	60050500	3	4	296	1	0	0	0	0	1	0	0	0	5081	681	24	2	52	2	ELOVL7	5	60050500	Missense_Mutation	SNP	C	TCGA-BP-4174-01A-02D-1366-10		60050500	120864760	14	18826											
SYNE1	23345	hgsc.bcm.edu;ucsc.edu	37	6	152716701	152716701	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	G	152716701	T	G	152716701	3	3	296	1	0	0	0	0	1	0	0	0	15457	1838	64	5	19188	5	SYNE1	6	152716701	Missense_Mutation	SNP	T	TCGA-BP-4174-01A-02D-1366-10		152716701	18398366	15	18827											
COL1A2	1278	hgsc.bcm.edu;ucsc.edu	37	7	94040381	94040381	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	C	94040381	G	C	94040381	3	2	296	1	0	0	0	0	1	0	0	0	3680	1029	36	4	1355	4	COL1A2	7	94040381	Missense_Mutation	SNP	G	TCGA-BP-4174-01A-02D-1366-10		94040381	65098282	16	18828											
SNTG1	54212	hgsc.bcm.edu;ucsc.edu	37	8	51705388	51705388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	51705388	G	T	51705388	3	4	296	1	0	0	0	0	1	0	0	0	14887	1285	45	4	1619	4	SNTG1	8	51705388	Missense_Mutation	SNP	G	TCGA-BP-4174-01A-02D-1366-10		51705388	94658634	17	18829											
KIF24	347240	hgsc.bcm.edu;ucsc.edu	37	9	34271874	34271874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	34271874	C	A	34271874	3	1	296	1	0	0	0	0	1	0	0	0	8299	913	32	4	2864	4	KIF24	9	34271874	Missense_Mutation	SNP	C	TCGA-BP-4174-01A-02D-1366-10		34271874	106941557	18	18830											
COL15A1	1306	hgsc.bcm.edu	37	9	101777794	101777794	+	Silent	SNP	A	A	C	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	C	101777794	A	C	101777794	2	2	296	1	0	0	0	0	0	0	0	1	3674	175	7	5		5	COL15A1	9	101777794	Silent	SNP	A	TCGA-BP-4174-01A-02D-1366-10	67505920	101777794	39435637	19	18831											
PTGS1	5742	hgsc.bcm.edu;ucsc.edu	37	9	125140798	125140798	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	125140798	G	T	125140798	4	4	296	1	0	0	0	0	0	1	0	0	12766	1175	41	4	312	4	PTGS1	9	125140798	Nonsense_Mutation	SNP	G	TCGA-BP-4174-01A-02D-1366-10	23363004	125140798	16072633	20	18832											
INPP5E	56623	hgsc.bcm.edu	37	9	139333264	139333264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	139333264	G	A	139333264	3	1	296	1	0	0	0	0	1	0	0	0	7764	1174	41	2	1366	2	INPP5E	9	139333264	Missense_Mutation	SNP	G	TCGA-BP-4174-01A-02D-1366-10	14192466	139333264	1880167	21	18833											
C8G	733	hgsc.bcm.edu	37	9	139839785	139839785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	139839785	G	A	139839785	3	1	296	1	0	0	0	0	1	0	0	0	2420	1348	47	2	15	2	C8G	9	139839785	Missense_Mutation	SNP	G	TCGA-BP-4174-01A-02D-1366-10	506521	139839785	1373646	22	18834											
ZNF33B	7582	hgsc.bcm.edu	37	10	43088537	43088537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	C	43088537	T	C	43088537	3	2	296	1	0	0	0	0	1	0	0	0	17867	1792	62	3	479	3	ZNF33B	10	43088537	Missense_Mutation	SNP	T	TCGA-BP-4174-01A-02D-1366-10		43088537	92446210	23	18835											
PRF1	5551	hgsc.bcm.edu;ucsc.edu	37	10	72357903	72357903	+	Missense_Mutation	SNP	C	C	T	rs141702424		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	72357903	C	T	72357903	3	4	296	1	0	0	0	0	1	0	0	0	12488	710	25	2	97	2	PRF1	10	72357903	Missense_Mutation	SNP	C	TCGA-BP-4174-01A-02D-1366-10	29269366	72357903	63176844	24	18836											
ARF3	377	hgsc.bcm.edu;ucsc.edu	37	12	49333860	49333860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	C	49333860	T	C	49333860	3	2	296	1	0	0	0	0	1	0	0	0	845	1725	60	3	378	3	ARF3	12	49333860	Missense_Mutation	SNP	T	TCGA-BP-4174-01A-02D-1366-10		49333860	84518035	25	18837											
NCKAP1L	3071	hgsc.bcm.edu;ucsc.edu	37	12	54914587	54914587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	G	54914587	A	G	54914587	3	3	296	1	0	0	0	0	1	0	0	0	10229	159	6	3	1801	3	NCKAP1L	12	54914587	Missense_Mutation	SNP	A	TCGA-BP-4174-01A-02D-1366-10	5580727	54914587	78937308	26	18838											
AKAP11	11215	hgsc.bcm.edu;ucsc.edu	37	13	42875949	42875949	+	Silent	SNP	C	C	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	42875949	C	T	42875949	2	4	296	1	0	0	0	0	0	0	0	1	447	564	20	2		2	AKAP11	13	42875949	Silent	SNP	C	TCGA-BP-4174-01A-02D-1366-10		42875949	72293929	27	18839											
TMEM179	388021	hgsc.bcm.edu;ucsc.edu	37	14	105061450	105061450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	C	105061450	A	C	105061450	3	2	296	1	0	0	0	0	1	0	0	0	16108	11	1	5	23	5	TMEM179	14	105061450	Missense_Mutation	SNP	A	TCGA-BP-4174-01A-02D-1366-10		105061450	2288090	28	18840											
ACAN	176	hgsc.bcm.edu;ucsc.edu	37	15	89402128	89402128	+	Silent	SNP	C	C	A	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	89402128	C	A	89402128	2	1	296	1	0	0	0	0	0	0	0	1	117	639	23	4		4	ACAN	15	89402128	Silent	SNP	C	TCGA-BP-4174-01A-02D-1366-10		89402128	13129264	29	18841											
ZDHHC1	29800	hgsc.bcm.edu	37	16	67428940	67428940	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	67428940	T	A	67428940	4	1	296	1	0	0	0	0	0	1	0	0	17612	1850	64	5	270	5	ZDHHC1	16	67428940	Nonsense_Mutation	SNP	T	TCGA-BP-4174-01A-02D-1366-10		67428940	22925813	30	18842											
FUT3	2525	hgsc.bcm.edu	37	19	5843822	5843822	+	Silent	SNP	T	T	C	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	C	5843822	T	C	5843822	2	2	296	1	0	0	0	0	0	0	0	1	6112	1722	60	3		3	FUT3	19	5843822	Silent	SNP	T	TCGA-BP-4174-01A-02D-1366-10		5843822	53285161	31	18843											
LENG1	79165	hgsc.bcm.edu	37	19	54663351	54663351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	G	54663351	C	G	54663351	3	3	296	1	0	0	0	0	1	0	0	0	8730	652	23	4	727	4	LENG1	19	54663351	Missense_Mutation	SNP	C	TCGA-BP-4174-01A-02D-1366-10	48819529	54663351	4465632	32	18844											
CD93	22918	hgsc.bcm.edu;ucsc.edu	37	20	23066400	23066400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	23066400	G	T	23066400	3	4	296	1	0	0	0	0	1	0	0	0	3049	933	33	4	1536	4	CD93	20	23066400	Missense_Mutation	SNP	G	TCGA-BP-4174-01A-02D-1366-10		23066400	39959120	33	18845											
PROCR	10544	hgsc.bcm.edu	37	20	33764031	33764031	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	T	33764031	A	T	33764031	3	4	296	1	0	0	0	0	1	0	0	0	12557	217	8	5	393	5	PROCR	20	33764031	Missense_Mutation	SNP	A	TCGA-BP-4174-01A-02D-1366-10	10697631	33764031	29261489	34	18846											
CHRNA4	1137	hgsc.bcm.edu;ucsc.edu	37	20	61981905	61981905	+	Silent	SNP	G	G	A	rs121912257	bycluster	TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	61981905	G	A	61981905	2	1	296	1	0	0	0	0	0	0	0	1	3387	1103	39	1		1	CHRNA4	20	61981905	Silent	SNP	G	TCGA-BP-4174-01A-02D-1366-10	28217874	61981905	1043615	35	18847											
HIC2	23119	hgsc.bcm.edu	37	22	21800836	21800836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	G	21800836	A	G	21800836	3	3	296	1	0	0	0	0	1	0	0	0	7109	159	6	3	1658	3	HIC2	22	21800836	Missense_Mutation	SNP	A	TCGA-BP-4174-01A-02D-1366-10		21800836	29503730	36	18848											
PES1	23481	hgsc.bcm.edu;ucsc.edu	37	22	30983297	30983299	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	-	30983299	TTG	-	30983297	7	5	296	1	0	1	0	1	0	0	0	0	11740	1841	64	0	1470	0	PES1	22	30983297	In_Frame_Del	DEL	TTG	TCGA-BP-4174-01A-02D-1366-10	9182461	30983297	20321269	37	18849											
NCAPH2	29781	hgsc.bcm.edu	37	22	50961541	50961541	+	Silent	SNP	G	G	A	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	A	50961541	G	A	50961541	2	1	296	1	0	0	0	0	0	0	0	1	10217	1335	47	2		2	NCAPH2	22	50961541	Silent	SNP	G	TCGA-BP-4174-01A-02D-1366-10	19978244	50961541	343025	38	18850											
MAGED1	9500	hgsc.bcm.edu	37	X	51640358	51640358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	G	51640358	A	G	51640358	3	3	296	1	0	0	0	0	1	0	0	0	9190	131	5	3	1663	3	MAGED1	23	51640358	Missense_Mutation	SNP	A	TCGA-BP-4174-01A-02D-1366-10		51640358	103630202	39	18851											
NRK	203447	hgsc.bcm.edu;ucsc.edu	37	X	105132390	105132390	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4174-01A-02D-1366-10	TCGA-BP-4174-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	17bc5432-4fe4-4b0b-a99f-760bee5b9d15	65b270c5-362f-4159-9372-96a1abc44391	G	105132390	C	G	105132390	3	3	296	1	0	0	0	0	1	0	0	0	10662	681	24	4	374	4	NRK	23	105132390	Missense_Mutation	SNP	C	TCGA-BP-4174-01A-02D-1366-10	53492032	105132390	50138170	40	18852											
NBPF3	84224	hgsc.bcm.edu	37	1	21798206	21798206	+	Silent	SNP	A	A	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	21798206	A	G	21798206	2	3	297	1	0	0	0	0	0	0	0	1	10204	262	10	3		3	NBPF3	1	21798206	Silent	SNP	A	TCGA-BP-4176-01A-02D-1366-10		21798206	227452415	1	18853											
NBPF3	84224	hgsc.bcm.edu	37	1	21808128	21808128	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	21808128	A	T	21808128	3	4	297	1	0	0	0	0	1	0	0	0	10204	275	10	5	1518	5	NBPF3	1	21808128	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10	9922	21808128	227442493	2	18854											
AMY1B	277	hgsc.bcm.edu	37	1	104233933	104233933	+	Missense_Mutation	SNP	A	A	G	rs1130744		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	104233933	A	G	104233933	3	3	297	1	0	0	0	0	1	0	0	0	592	449	16	3	2043	3	AMY1B	1	104233933	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10	82425805	104233933	145016688	3	18855											
SPAG17	200162	hgsc.bcm.edu;ucsc.edu	37	1	118658052	118658052	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	118658052	C	G	118658052	3	3	297	1	0	0	0	0	1	0	0	0	14992	797	28	4	6523	4	SPAG17	1	118658052	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	14424119	118658052	130592569	4	18856											
FCGR1B	2210	hgsc.bcm.edu	37	1	120927292	120927292	+	Missense_Mutation	SNP	T	T	C	rs1050204	bycluster;byfrequency;by2hit2allele	TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	120927292	T	C	120927292	3	2	297	1	0	0	0	0	1	0	0	0	5787	1783	62	3	158	3	FCGR1B	1	120927292	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	2269240	120927292	128323329	5	18857											
HAX1	10456	hgsc.bcm.edu;ucsc.edu	37	1	154247938	154247938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	154247938	G	C	154247938	3	2	297	1	0	0	0	0	1	0	0	0	6982	971	34	4	755	4	HAX1	1	154247938	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	33320646	154247938	95002683	6	18858											
ARHGEF11	9826	hgsc.bcm.edu	37	1	156907115	156907115	+	Missense_Mutation	SNP	T	T	C	rs63387061	bycluster;byfrequency;by1000genomes	TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	156907115	T	C	156907115	3	2	297	1	0	0	0	0	1	0	0	0	896	1609	56	3	334	3	ARHGEF11	1	156907115	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	2659177	156907115	92343506	7	18859											
BAT2L2	0	hgsc.bcm.edu	37	1	171509616	171509616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	171509616	G	T	171509616	3	4	297	1	0	0	0	0	1	0	0	0	1321	1000	35	4	3063	4	BAT2L2	1	171509616	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	14602501	171509616	77741005	8	18860											
FAM129A	116496	hgsc.bcm.edu;ucsc.edu	37	1	184859254	184859254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	184859254	G	T	184859254	3	4	297	1	0	0	0	0	1	0	0	0	5440	1232	43	4	2409	4	FAM129A	1	184859254	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	13349638	184859254	64391367	9	18861											
HMCN1	83872	hgsc.bcm.edu	37	1	185704113	185704113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	185704113	G	C	185704113	3	2	297	1	0	0	0	0	1	0	0	0	7227	1175	41	4	204	4	HMCN1	1	185704113	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	844859	185704113	63546508	10	18862											
ITPKB	3707	hgsc.bcm.edu	37	1	226924364	226924364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	226924364	G	A	226924364	3	1	297	1	0	0	0	0	1	0	0	0	7925	1116	39	1	2072	1	ITPKB	1	226924364	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	41220251	226924364	22326257	11	18863											
TARBP1	6894	hgsc.bcm.edu;ucsc.edu	37	1	234563467	234563467	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	234563467	A	C	234563467	3	2	297	1	0	0	0	0	1	0	0	0	15567	72	3	5	1811	5	TARBP1	1	234563467	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10	7639103	234563467	14687154	12	18864											
OR2M7	391196	hgsc.bcm.edu	37	1	248487282	248487282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	248487282	C	T	248487282	3	4	297	1	0	0	0	0	1	0	0	0	11021	922	32	2	352	2	OR2M7	1	248487282	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	13923815	248487282	763339	13	18865											
OR2T35	403244	hgsc.bcm.edu	37	1	248801633	248801633	+	Silent	SNP	A	A	G	rs74901534		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	248801633	A	G	248801633	2	3	297	1	0	0	0	0	0	0	0	1	11033	30	2	3		3	OR2T35	1	248801633	Silent	SNP	A	TCGA-BP-4176-01A-02D-1366-10	314351	248801633	448988	14	18866											
ADI1	55256	hgsc.bcm.edu	37	2	3504658	3504658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	3504658	C	T	3504658	3	4	297	1	0	0	0	0	1	0	0	0	315	652	23	1	200	1	ADI1	2	3504658	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10		3504658	239694715	15	18867											
HSPC159	0	hgsc.bcm.edu;ucsc.edu	37	2	64682738	64682738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	64682738	G	T	64682738	3	4	297	1	0	0	0	0	1	0	0	0	7434	1348	47	4	134	4	HSPC159	2	64682738	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	61178080	64682738	178516635	16	18868											
TEKT4	150483	hgsc.bcm.edu	37	2	95541442	95541442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	95541442	C	T	95541442	3	4	297	1	0	0	0	0	1	0	0	0	15767	893	31	1	1064	1	TEKT4	2	95541442	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	30858704	95541442	147657931	17	18869											
MAP4K4	9448	hgsc.bcm.edu;ucsc.edu	37	2	102490653	102490653	+	Silent	SNP	C	C	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	102490653	C	A	102490653	2	1	297	1	0	0	0	0	0	0	0	1	9269	610	22	4		4	MAP4K4	2	102490653	Silent	SNP	C	TCGA-BP-4176-01A-02D-1366-10	6949211	102490653	140708720	18	18870											
MCM6	4175	hgsc.bcm.edu	37	2	136626383	136626383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	136626383	C	A	136626383	3	1	297	1	0	0	0	0	1	0	0	0	9398	565	20	4	2108	4	MCM6	2	136626383	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	34135730	136626383	106572990	19	18871											
SESTD1	91404	hgsc.bcm.edu	37	2	179997085	179997085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	179997085	A	C	179997085	3	2	297	1	0	0	0	0	1	0	0	0	14140	358	13	5	1208	5	SESTD1	2	179997085	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10	43370702	179997085	63202288	20	18872											
SLC39A10	57181	hgsc.bcm.edu;ucsc.edu	37	2	196593015	196593015	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	196593015	C	G	196593015	3	3	297	1	0	0	0	0	1	0	0	0	14626	478	17	4	2309	4	SLC39A10	2	196593015	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	16595930	196593015	46606358	21	18873											
SF3B1	23451	hgsc.bcm.edu;ucsc.edu	37	2	198257042	198257042	+	Silent	SNP	A	A	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	198257042	A	C	198257042	2	2	297	1	0	0	0	0	0	0	0	1	14162	117	5	5		5	SF3B1	2	198257042	Silent	SNP	A	TCGA-BP-4176-01A-02D-1366-10	1664027	198257042	44942331	22	18874											
MARS2	92935	hgsc.bcm.edu	37	2	198571042	198571042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	198571042	T	G	198571042	3	3	297	1	0	0	0	0	1	0	0	0	9324	1551	54	5	915	5	MARS2	2	198571042	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	314000	198571042	44628331	23	18875											
TRANK1	9881	hgsc.bcm.edu;ucsc.edu	37	3	36872707	36872707	+	Silent	SNP	C	C	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	36872707	C	T	36872707	2	4	297	1	0	0	0	0	0	0	0	1	16466	523	19	1		1	TRANK1	3	36872707	Silent	SNP	C	TCGA-BP-4176-01A-02D-1366-10		36872707	161149723	24	18876											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52584502	52584502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	52584502	A	G	52584502	3	3	297	1	0	0	0	0	1	0	0	0	11498	188	7	3	245	3	PBRM1	3	52584502	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10	15711795	52584502	145437928	25	18877											
EPHA3	2042	hgsc.bcm.edu	37	3	89468539	89468539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	89468539	A	T	89468539	3	4	297	1	0	0	0	0	1	0	0	0	5170	28	1	5	2141	5	EPHA3	3	89468539	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10	36884037	89468539	108553891	26	18878											
CASR	846	hgsc.bcm.edu;ucsc.edu	37	3	121980855	121980855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	121980855	G	A	121980855	3	1	297	1	0	0	0	0	1	0	0	0	2684	1348	47	2	983	2	CASR	3	121980855	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	32512316	121980855	76041575	27	18879											
ATR	545	hgsc.bcm.edu	37	3	142254950	142254950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	142254950	C	A	142254950	3	1	297	1	0	0	0	0	1	0	0	0	1204	695	24	4	4227	4	ATR	3	142254950	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	20274095	142254950	55767480	28	18880											
LRRC34	151827	hgsc.bcm.edu;ucsc.edu	37	3	169514626	169514626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	169514626	T	A	169514626	3	1	297	1	0	0	0	0	1	0	0	0	8996	1696	59	5	617	5	LRRC34	3	169514626	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	27259676	169514626	28507804	29	18881											
SLC34A2	10568	hgsc.bcm.edu	37	4	25667856	25667856	+	Silent	SNP	C	C	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	25667856	C	A	25667856	2	1	297	1	0	0	0	0	0	0	0	1	14581	668	24	4		4	SLC34A2	4	25667856	Silent	SNP	C	TCGA-BP-4176-01A-02D-1366-10		25667856	165486420	30	18882											
UGT8	7368	hgsc.bcm.edu;ucsc.edu	37	4	115585285	115585286	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	-	115585286	GA	-	115585285	7	5	297	1	0	1	0	1	0	0	0	0	16977	1277	45	0	963	0	UGT8	4	115585285	Frame_Shift_Del	DEL	GA	TCGA-BP-4176-01A-02D-1366-10	89917429	115585285	75568991	31	18883											
GPR98	84059	hgsc.bcm.edu;ucsc.edu	37	5	89925092	89925092	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	89925092	C	G	89925092	3	3	297	1	0	0	0	0	1	0	0	0	6728	506	18	4	1609	4	GPR98	5	89925092	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10		89925092	90990168	32	18884											
SH3RF2	153769	hgsc.bcm.edu;ucsc.edu	37	5	145428752	145428752	+	Silent	SNP	C	C	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	145428752	C	T	145428752	2	4	297	1	0	0	0	0	0	0	0	1	14272	668	24	2		2	SH3RF2	5	145428752	Silent	SNP	C	TCGA-BP-4176-01A-02D-1366-10	55503660	145428752	35486508	33	18885											
SCAND3	114821	hgsc.bcm.edu	37	6	28543057	28543057	+	Silent	SNP	T	T	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	28543057	T	C	28543057	2	2	297	1	0	0	0	0	0	0	0	1	13889	1838	64	3		3	SCAND3	6	28543057	Silent	SNP	T	TCGA-BP-4176-01A-02D-1366-10		28543057	142572010	34	18886											
OR2J2	26707	hgsc.bcm.edu;ucsc.edu	37	6	29141432	29141433	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	29141433	-	A	29141432	7	5	297	1	0	1	1	0	0	0	0	0	11010	710	25	0	22	0	OR2J2	6	29141432	Frame_Shift_Ins	INS	-	TCGA-BP-4176-01A-02D-1366-10	598375	29141432	141973635	35	18887											
BAK1	578	hgsc.bcm.edu	37	6	33545340	33545340	+	Silent	SNP	G	G	A	rs2227925	bycluster;byfrequency;by1000genomes	TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	33545340	G	A	33545340	2	1	297	1	0	0	0	0	0	0	0	1	1305	1079	38	1		1	BAK1	6	33545340	Silent	SNP	G	TCGA-BP-4176-01A-02D-1366-10	4403908	33545340	137569727	36	18888											
ITPR3	3710	hgsc.bcm.edu	37	6	33662730	33662730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	33662730	G	A	33662730	3	1	297	1	0	0	0	0	1	0	0	0	7929	1319	46	2	8041	2	ITPR3	6	33662730	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	117390	33662730	137452337	37	18889											
SNX9	51429	hgsc.bcm.edu;ucsc.edu	37	6	158330994	158330994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	158330994	C	T	158330994	3	4	297	1	0	0	0	0	1	0	0	0	14922	768	27	1	920	1	SNX9	6	158330994	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	124668264	158330994	12784073	38	18890											
RSPH10B	222967	hgsc.bcm.edu	37	7	5972412	5972412	+	Splice_Site	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	5972412	C	G	5972412	5	3	297	1	0	0	0	0	0	0	1	0	13716	579	20	4	390	4	RSPH10B	7	5972412	Splice_Site	SNP	C	TCGA-BP-4176-01A-02D-1366-10		5972412	153166251	39	18891											
C7orf41	222166	hgsc.bcm.edu	37	7	30174891	30174891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	30174891	G	T	30174891	3	4	297	1	0	0	0	0	1	0	0	0	2393	1174	41	4	141	4	C7orf41	7	30174891	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	24202479	30174891	128963772	40	18892											
AUTS2	26053	hgsc.bcm.edu;ucsc.edu	37	7	69364395	69364395	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	69364395	C	G	69364395	3	3	297	1	0	0	0	0	1	0	0	0	1225	623	22	4	439	4	AUTS2	7	69364395	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	39189504	69364395	89774268	41	18893											
TAS2R3	50831	hgsc.bcm.edu	37	7	141464682	141464682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	141464682	C	A	141464682	3	1	297	1	0	0	0	0	1	0	0	0	15584	913	32	4	726	4	TAS2R3	7	141464682	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	72100287	141464682	17673981	42	18894											
ERLIN2	11160	hgsc.bcm.edu;ucsc.edu	37	8	37611039	37611039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	37611039	G	A	37611039	3	1	297	1	0	0	0	0	1	0	0	0	5235	971	34	2	888	2	ERLIN2	8	37611039	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10		37611039	108752983	43	18895											
PTK2	5747	hgsc.bcm.edu	37	8	141745400	141745400	+	Silent	SNP	G	G	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	141745400	G	T	141745400	2	4	297	1	0	0	0	0	0	0	0	1	12773	987	35	4		4	PTK2	8	141745400	Silent	SNP	G	TCGA-BP-4176-01A-02D-1366-10	104134361	141745400	4618622	44	18896											
PUF60	22827	hgsc.bcm.edu	37	8	144899131	144899131	+	Silent	SNP	C	C	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	144899131	C	A	144899131	2	1	297	1	0	0	0	0	0	0	0	1	12837	639	23	4		4	PUF60	8	144899131	Silent	SNP	C	TCGA-BP-4176-01A-02D-1366-10	3153731	144899131	1464891	45	18897											
FAM166B	730112	hgsc.bcm.edu;ucsc.edu	37	9	35563020	35563020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	35563020	T	A	35563020	3	1	297	1	0	0	0	0	1	0	0	0	5486	1551	54	5	318	5	FAM166B	9	35563020	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10		35563020	105650411	46	18898											
FRMPD1	22844	hgsc.bcm.edu;ucsc.edu	37	9	37731077	37731077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	37731077	G	T	37731077	3	4	297	1	0	0	0	0	1	0	0	0	6064	1203	42	4	865	4	FRMPD1	9	37731077	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	2168057	37731077	103482354	47	18899											
FNBP1	23048	hgsc.bcm.edu;ucsc.edu	37	9	132741632	132741632	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	132741632	T	A	132741632	3	1	297	1	0	0	0	0	1	0	0	0	5972	1722	60	5	1751	5	FNBP1	9	132741632	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	95010555	132741632	8471799	48	18900											
ACBD5	91452	hgsc.bcm.edu	37	10	27497270	27497270	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	27497270	T	A	27497270	3	1	297	1	0	0	0	0	1	0	0	0	125	1812	63	5	284	5	ACBD5	10	27497270	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10		27497270	108037477	49	18901											
POLR3A	11128	hgsc.bcm.edu;ucsc.edu	37	10	79761970	79761970	+	Missense_Mutation	SNP	G	G	T	rs137961403	alternate_allele	TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	79761970	G	T	79761970	3	4	297	1	0	0	0	0	1	0	0	0	12235	933	33	4	1888	4	POLR3A	10	79761970	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	52264700	79761970	55772777	50	18902											
RASSF7	8045	hgsc.bcm.edu	37	11	563219	563219	+	Nonsense_Mutation	SNP	C	C	T	rs139977222		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	563219	C	T	563219	4	4	297	1	0	0	0	0	0	1	0	0	13104	644	23	1	863	1	RASSF7	11	563219	Nonsense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10		563219	134443297	51	18903											
ASCL3	56676	hgsc.bcm.edu	37	11	8959460	8959460	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	8959460	G	T	8959460	4	4	297	1	0	0	0	0	0	1	0	0	1035	1372	48	4	300	4	ASCL3	11	8959460	Nonsense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	8396241	8959460	126047056	52	18904											
CCS	9973	hgsc.bcm.edu	37	11	66373234	66373234	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	66373234	T	G	66373234	3	3	297	1	0	0	0	0	1	0	0	0	2954	1551	54	5	763	5	CCS	11	66373234	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	57413774	66373234	68633282	53	18905											
C2CD3	26005	hgsc.bcm.edu;ucsc.edu	37	11	73814557	73814557	+	Silent	SNP	T	T	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	73814557	T	A	73814557	2	1	297	1	0	0	0	0	0	0	0	1	2156	1625	57	5		5	C2CD3	11	73814557	Silent	SNP	T	TCGA-BP-4176-01A-02D-1366-10	7441323	73814557	61191959	54	18906											
MED17	9440	hgsc.bcm.edu	37	11	93526948	93526948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	93526948	A	C	93526948	3	2	297	1	0	0	0	0	1	0	0	0	9442	333	12	5	706	5	MED17	11	93526948	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10	19712391	93526948	41479568	55	18907											
EXPH5	23086	hgsc.bcm.edu;ucsc.edu	37	11	108384025	108384025	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	108384025	T	G	108384025	3	3	297	1	0	0	0	0	1	0	0	0	5324	1841	64	5	3764	5	EXPH5	11	108384025	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	14857077	108384025	26622491	56	18908											
ROBO3	64221	hgsc.bcm.edu	37	11	124741007	124741007	+	Silent	SNP	C	C	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	124741007	C	A	124741007	2	1	297	1	0	0	0	0	0	0	0	1	13528	581	21	4		4	ROBO3	11	124741007	Silent	SNP	C	TCGA-BP-4176-01A-02D-1366-10	16356982	124741007	10265509	57	18909											
TAPBPL	55080	hgsc.bcm.edu;ucsc.edu	37	12	6567862	6567862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	6567862	T	A	6567862	3	1	297	1	0	0	0	0	1	0	0	0	15565	1551	54	5	974	5	TAPBPL	12	6567862	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10		6567862	127284033	58	18910											
COL2A1	1280	hgsc.bcm.edu;ucsc.edu	37	12	48379700	48379700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	48379700	G	A	48379700	3	1	297	1	0	0	0	0	1	0	0	0	3689	1174	41	2	3011	2	COL2A1	12	48379700	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	41811838	48379700	85472195	59	18911											
SPATS2	65244	hgsc.bcm.edu;ucsc.edu	37	12	49854814	49854814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	49854814	C	A	49854814	3	1	297	1	0	0	0	0	1	0	0	0	15031	595	21	4	21	4	SPATS2	12	49854814	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	1475114	49854814	83997081	60	18912											
DCTN2	10540	hgsc.bcm.edu;ucsc.edu	37	12	57926027	57926027	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	57926027	T	G	57926027	3	3	297	1	0	0	0	0	1	0	0	0	4309	1664	58	5	221	5	DCTN2	12	57926027	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	8071213	57926027	75925868	61	18913											
BCL7A	605	hgsc.bcm.edu;ucsc.edu	37	12	122473306	122473306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	122473306	T	G	122473306	3	3	297	1	0	0	0	0	1	0	0	0	1378	1783	62	5	254	5	BCL7A	12	122473306	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	64547279	122473306	11378589	62	18914											
ATP8A2	51761	hgsc.bcm.edu;ucsc.edu	37	13	26594067	26594067	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	26594067	C	G	26594067	3	3	297	1	0	0	0	0	1	0	0	0	1193	827	29	4	3657	4	ATP8A2	13	26594067	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10		26594067	88575811	63	18915											
TMCO3	55002	hgsc.bcm.edu	37	13	114149923	114149923	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	114149923	C	G	114149923	3	3	297	1	0	0	0	0	1	0	0	0	16009	912	32	4	29	4	TMCO3	13	114149923	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	87555856	114149923	1019955	64	18916											
HERC2	8924	hgsc.bcm.edu;ucsc.edu	37	15	28414709	28414709	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	28414709	G	C	28414709	3	2	297	1	0	0	0	0	1	0	0	0	7065	942	33	4	4466	4	HERC2	15	28414709	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10		28414709	74116683	65	18917	243	2									
HERC2	8924	hgsc.bcm.edu;ucsc.edu	37	15	28414719	28414719	+	Silent	SNP	A	A	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	28414719	A	G	28414719	2	3	297	1	0	0	0	0	0	0	0	1	7065	117	5	3		3	HERC2	15	28414719	Silent	SNP	A	TCGA-BP-4176-01A-02D-1366-10	10	28414719	74116673	66	18918	243	2									
UBR1	197131	hgsc.bcm.edu;ucsc.edu	37	15	43320014	43320014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	43320014	T	C	43320014	3	2	297	1	0	0	0	0	1	0	0	0	16913	1725	60	3	2961	3	UBR1	15	43320014	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	14905295	43320014	59211378	67	18919											
LEO1	123169	hgsc.bcm.edu	37	15	52254683	52254683	+	Silent	SNP	T	T	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	52254683	T	C	52254683	2	2	297	1	0	0	0	0	0	0	0	1	8733	1799	63	3		3	LEO1	15	52254683	Silent	SNP	T	TCGA-BP-4176-01A-02D-1366-10	8934669	52254683	50276709	68	18920											
FAM108C1	58489	hgsc.bcm.edu;ucsc.edu	37	15	81046580	81046580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	81046580	A	G	81046580	3	3	297	1	0	0	0	0	1	0	0	0	5397	333	12	3	869	3	FAM108C1	15	81046580	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10	28791897	81046580	21484812	69	18921											
CNTNAP4	85445	hgsc.bcm.edu	37	16	76509834	76509834	+	Splice_Site	SNP	A	A	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	76509834	A	T	76509834	5	4	297	1	0	0	0	0	0	0	1	0	3651	434	15	5	1709	5	CNTNAP4	16	76509834	Splice_Site	SNP	A	TCGA-BP-4176-01A-02D-1366-10		76509834	13844919	70	18922											
TP53	7157	hgsc.bcm.edu;ucsc.edu	37	17	7573974	7573974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	7573974	C	A	7573974	3	1	297	1	0	0	0	0	1	0	0	0	16393	680	24	4	136	4	TP53	17	7573974	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10		7573974	73621236	71	18923											
SLFN13	146857	hgsc.bcm.edu;ucsc.edu	37	17	33769171	33769171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	33769171	A	G	33769171	3	3	297	1	0	0	0	0	1	0	0	0	14749	188	7	3	1368	3	SLFN13	17	33769171	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10	26195197	33769171	47426039	72	18924											
DUSP3	1845	hgsc.bcm.edu;ucsc.edu	37	17	41847147	41847147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	41847147	G	A	41847147	3	1	297	1	0	0	0	0	1	0	0	0	4828	1116	39	1	173	1	DUSP3	17	41847147	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	8077976	41847147	39348063	73	18925											
SNX11	29916	hgsc.bcm.edu	37	17	46190702	46190702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	46190702	C	T	46190702	3	4	297	1	0	0	0	0	1	0	0	0	14895	759	27	1	179	1	SNX11	17	46190702	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	4343555	46190702	35004508	74	18926											
CDH2	1000	hgsc.bcm.edu	37	18	25593663	25593663	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	25593663	G	C	25593663	3	2	297	1	0	0	0	0	1	0	0	0	3107	1029	36	4	2393	4	CDH2	18	25593663	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10		25593663	52483585	75	18927											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9087220	9087220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	9087220	A	G	9087220	3	3	297	1	0	0	0	0	1	0	0	0	9980	372	13	3	39264	3	MUC16	19	9087220	Missense_Mutation	SNP	A	TCGA-BP-4176-01A-02D-1366-10		9087220	50041763	76	18928											
ACP5	54	hgsc.bcm.edu	37	19	11685841	11685841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	11685841	C	T	11685841	3	4	297	1	0	0	0	0	1	0	0	0	164	681	24	2	19	2	ACP5	19	11685841	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	2598621	11685841	47443142	77	18929											
CCDC123	0	hgsc.bcm.edu	37	19	33444588	33444588	+	Missense_Mutation	SNP	T	T	G	rs73035551	bycluster	TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	33444588	T	G	33444588	3	3	297	1	0	0	0	0	1	0	0	0	2761	1435	50	5	1990	5	CCDC123	19	33444588	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	21758747	33444588	25684395	78	18930											
COX6B1	1340	hgsc.bcm.edu;ucsc.edu	37	19	36142196	36142196	+	Silent	SNP	T	T	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	36142196	T	C	36142196	2	2	297	1	0	0	0	0	0	0	0	1	3778	1809	63	3		3	COX6B1	19	36142196	Silent	SNP	T	TCGA-BP-4176-01A-02D-1366-10	2697608	36142196	22986787	79	18931											
ZNF180	7733	hgsc.bcm.edu	37	19	45001361	45001361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	45001361	G	A	45001361	3	1	297	1	0	0	0	0	1	0	0	0	17760	1348	47	2	1987	2	ZNF180	19	45001361	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10	8859165	45001361	14127622	80	18932											
SIGLEC7	27036	hgsc.bcm.edu;ucsc.edu	37	19	51645785	51645785	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	51645785	C	G	51645785	3	3	297	1	0	0	0	0	1	0	0	0	14326	477	17	4	161	4	SIGLEC7	19	51645785	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	6644424	51645785	7483198	81	18933											
ZNF667	63934	hgsc.bcm.edu;ucsc.edu	37	19	56953747	56953747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	56953747	C	G	56953747	3	3	297	1	0	0	0	0	1	0	0	0	18086	623	22	4	1219	4	ZNF667	19	56953747	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	5307962	56953747	2175236	82	18934											
ZNF134	7693	hgsc.bcm.edu	37	19	58132725	58132725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	58132725	C	G	58132725	3	3	297	1	0	0	0	0	1	0	0	0	17736	855	30	4	1244	4	ZNF134	19	58132725	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	1178978	58132725	996258	83	18935											
TMX4	56255	hgsc.bcm.edu;ucsc.edu	37	20	7962956	7962956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	C	7962956	T	C	7962956	3	2	297	1	0	0	0	0	1	0	0	0	16281	1551	54	3	61	3	TMX4	20	7962956	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10		7962956	55062564	84	18936											
CSE1L	1434	hgsc.bcm.edu;ucsc.edu	37	20	47707554	47707554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	47707554	T	A	47707554	3	1	297	1	0	0	0	0	1	0	0	0	3932	1435	50	5	2438	5	CSE1L	20	47707554	Missense_Mutation	SNP	T	TCGA-BP-4176-01A-02D-1366-10	39744598	47707554	15317966	85	18937											
BRWD1	54014	hgsc.bcm.edu;ucsc.edu	37	21	40571019	40571019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	40571019	G	T	40571019	3	4	297	1	0	0	0	0	1	0	0	0	1527	1232	43	4	1890	4	BRWD1	21	40571019	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10		40571019	7558876	86	18938											
FTCD	10841	hgsc.bcm.edu	37	21	47570414	47570414	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	47570414	C	G	47570414	3	3	297	1	0	0	0	0	1	0	0	0	6088	739	26	4	999	4	FTCD	21	47570414	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	6999395	47570414	559481	87	18939											
CLTCL1	8218	hgsc.bcm.edu	37	22	19220820	19220820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	T	19220820	C	T	19220820	3	4	297	1	0	0	0	0	1	0	0	0	3569	661	23	1	3628	1	CLTCL1	22	19220820	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10		19220820	32083746	88	18940											
HDAC6	10013	hgsc.bcm.edu	37	X	48681739	48681739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	48681739	G	A	48681739	3	1	297	1	0	0	0	0	1	0	0	0	7018	1203	42	2	3024	2	HDAC6	23	48681739	Missense_Mutation	SNP	G	TCGA-BP-4176-01A-02D-1366-10		48681739	106588821	89	18941											
CSTF2	1478	hgsc.bcm.edu	37	X	100088269	100088269	+	Silent	SNP	G	G	A	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	A	100088269	G	A	100088269	2	1	297	1	0	0	0	0	0	0	0	1	3986	991	35	2		2	CSTF2	23	100088269	Silent	SNP	G	TCGA-BP-4176-01A-02D-1366-10	51406530	100088269	55182291	90	18942											
GPR112	139378	hgsc.bcm.edu;ucsc.edu	37	X	135432122	135432122	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4176-01A-02D-1366-10	TCGA-BP-4176-11A-01D-1366-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	33e2b6cb-7c03-4090-bef5-ba13f7271a19	1eba4efc-588d-4bd6-9a70-3dd29f262753	G	135432122	C	G	135432122	3	3	297	1	0	0	0	0	1	0	0	0	6636	565	20	4	6267	4	GPR112	23	135432122	Missense_Mutation	SNP	C	TCGA-BP-4176-01A-02D-1366-10	35343853	135432122	19838438	91	18943											
AHDC1	27245	broad.mit.edu	37	1	27878461	27878461	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	T	27878461	C	T	27878461	3	4	298	1	0	0	0	0	1	0	0	0	412	768	27	1	4649	1	AHDC1	1	27878461	Missense_Mutation	SNP	C	TCGA-BP-4177-01A-02D-1421-08		27878461	221372160	1	18944											
ECHDC2	55268	broad.mit.edu	37	1	53373542	53373542	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	G	53373542	A	G	53373542	3	3	298	1	0	0	0	0	1	0	0	0	4896	333	12	3	447	3	ECHDC2	1	53373542	Missense_Mutation	SNP	A	TCGA-BP-4177-01A-02D-1421-08	25495081	53373542	195877079	2	18945											
HEATR5B	54497	broad.mit.edu	37	2	37227889	37227889	+	Silent	SNP	C	C	T			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	T	37227889	C	T	37227889	2	4	298	1	0	0	0	0	0	0	0	1	7039	564	20	2		2	HEATR5B	2	37227889	Silent	SNP	C	TCGA-BP-4177-01A-02D-1421-08		37227889	205971484	3	18946											
TTN	7273	broad.mit.edu	37	2	179458701	179458701	+	Missense_Mutation	SNP	T	T	G			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	G	179458701	T	G	179458701	3	3	298	1	0	0	0	0	1	0	0	0	16747	1606	56	5	49824	5	TTN	2	179458701	Missense_Mutation	SNP	T	TCGA-BP-4177-01A-02D-1421-08	142230812	179458701	63740672	4	18947											
YIPF7	285525	broad.mit.edu	37	4	44631452	44631452	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	G	44631452	A	G	44631452	3	3	298	1	0	0	0	0	1	0	0	0	17495	14	1	3	388	3	YIPF7	4	44631452	Missense_Mutation	SNP	A	TCGA-BP-4177-01A-02D-1421-08		44631452	146522824	5	18948											
AGPAT9	84803	broad.mit.edu	37	4	84502830	84502830	+	Silent	SNP	A	A	G			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	G	84502830	A	G	84502830	2	3	298	1	0	0	0	0	0	0	0	1	392	407	15	3		3	AGPAT9	4	84502830	Silent	SNP	A	TCGA-BP-4177-01A-02D-1421-08	39871378	84502830	106651446	6	18949											
TACR3	6870	broad.mit.edu	37	4	104512715	104512715	+	Silent	SNP	G	G	A			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	A	104512715	G	A	104512715	2	1	298	1	0	0	0	0	0	0	0	1	15519	1256	44	2		2	TACR3	4	104512715	Silent	SNP	G	TCGA-BP-4177-01A-02D-1421-08	20009885	104512715	86641561	7	18950											
OCLN	100506658	broad.mit.edu	37	5	68840911	68840911	+	Silent	SNP	C	C	G			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	G	68840911	C	G	68840911	2	3	298	1	0	0	0	0	0	0	0	1	10827	755	27	4		4	OCLN	5	68840911	Silent	SNP	C	TCGA-BP-4177-01A-02D-1421-08		68840911	112074349	8	18951											
GNA12	2768	broad.mit.edu	37	7	2770999	2770999	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	T	2770999	G	T	2770999	3	4	298	1	0	0	0	0	1	0	0	0	6507	1116	39	4	187	4	GNA12	7	2770999	Missense_Mutation	SNP	G	TCGA-BP-4177-01A-02D-1421-08		2770999	156367664	9	18952											
ASAH2	56624	broad.mit.edu	37	10	51974612	51974612	+	Missense_Mutation	SNP	G	G	C			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	C	51974612	G	C	51974612	3	2	298	1	0	0	0	0	1	0	0	0	1007	1203	42	4	1363	4	ASAH2	10	51974612	Missense_Mutation	SNP	G	TCGA-BP-4177-01A-02D-1421-08		51974612	83560135	10	18953											
CATSPERB	79820	broad.mit.edu	37	14	92126293	92126293	+	Missense_Mutation	SNP	A	A	C			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	C	92126293	A	C	92126293	3	2	298	1	0	0	0	0	1	0	0	0	2693	243	9	5	2082	5	CATSPERB	14	92126293	Missense_Mutation	SNP	A	TCGA-BP-4177-01A-02D-1421-08		92126293	15223247	11	18954											
CSK	1445	broad.mit.edu	37	15	75091169	75091169	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	A	75091169	C	A	75091169	3	1	298	1	0	0	0	0	1	0	0	0	3945	506	18	4	142	4	CSK	15	75091169	Missense_Mutation	SNP	C	TCGA-BP-4177-01A-02D-1421-08		75091169	27440223	12	18955											
CHD2	1106	broad.mit.edu	37	15	93524619	93524619	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	T	93524619	C	T	93524619	3	4	298	1	0	0	0	0	1	0	0	0	3327	759	27	1	3092	1	CHD2	15	93524619	Missense_Mutation	SNP	C	TCGA-BP-4177-01A-02D-1421-08	18433450	93524619	9006773	13	18956											
TXNDC11	51061	broad.mit.edu	37	16	11829975	11829975	+	Silent	SNP	C	C	A			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	A	11829975	C	A	11829975	2	1	298	1	0	0	0	0	0	0	0	1	16804	610	22	4		4	TXNDC11	16	11829975	Silent	SNP	C	TCGA-BP-4177-01A-02D-1421-08		11829975	78524778	14	18957											
OTOA	146183	broad.mit.edu	37	16	21698935	21698935	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	T	21698935	C	T	21698935	3	4	298	1	0	0	0	0	1	0	0	0	11309	623	22	2	661	2	OTOA	16	21698935	Missense_Mutation	SNP	C	TCGA-BP-4177-01A-02D-1421-08	9868960	21698935	68655818	15	18958											
OR1E1	8387	broad.mit.edu	37	17	3301331	3301331	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	T	3301331	G	T	3301331	3	4	298	1	0	0	0	0	1	0	0	0	10961	1203	42	4	574	4	OR1E1	17	3301331	Missense_Mutation	SNP	G	TCGA-BP-4177-01A-02D-1421-08		3301331	77893879	16	18959											
STRN4	29888	broad.mit.edu	37	19	47234130	47234130	+	Splice_Site	SNP	C	C	T			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	T	47234130	C	T	47234130	5	4	298	1	0	0	0	0	0	0	1	0	15343	869	30	2	1592	2	STRN4	19	47234130	Splice_Site	SNP	C	TCGA-BP-4177-01A-02D-1421-08		47234130	11894853	17	18960											
CCDC114	93233	broad.mit.edu	37	19	48807247	48807247	+	Silent	SNP	C	C	T			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	T	48807247	C	T	48807247	2	4	298	1	0	0	0	0	0	0	0	1	2753	796	28	2		2	CCDC114	19	48807247	Silent	SNP	C	TCGA-BP-4177-01A-02D-1421-08	1573117	48807247	10321736	18	18961											
KCNB1	3745	broad.mit.edu	37	20	47991026	47991026	+	Silent	SNP	G	G	A			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	A	47991026	G	A	47991026	2	1	298	1	0	0	0	0	0	0	0	1	8019	1136	40	1		1	KCNB1	20	47991026	Silent	SNP	G	TCGA-BP-4177-01A-02D-1421-08		47991026	15034494	19	18962											
CABP7	164633	broad.mit.edu	37	22	30124615	30124621	+	Splice_Site	DEL	CCAGGTG	CCAGGTG	-			TCGA-BP-4177-01A-02D-1421-08	TCGA-BP-4177-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ed088c23-e2ca-491b-94c0-9a5b66a1bd88	6336e23d-aedb-496b-a978-c4ad8ee66323	-	30124621	CCAGGTG	-	30124615	8	5	298	1	0	1	0	1	0	0	1	0	2537	522	18	0		0	CABP7	22	30124615	Splice_Site	DEL	CCAGGTG	TCGA-BP-4177-01A-02D-1421-08		30124615	21179951	20	18963											
HSPG2	3339	hgsc.bcm.edu	37	1	22213976	22213976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	22213976	G	A	22213976	3	1	299	1	0	0	0	0	1	0	0	0	7437	1232	43	2	12640	2	HSPG2	1	22213976	Missense_Mutation	SNP	G	TCGA-BP-4326-01A-01D-1366-10		22213976	227036645	1	18964											
SLC27A3	11000	hgsc.bcm.edu	37	1	153750666	153750666	+	Silent	SNP	G	G	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	153750666	G	T	153750666	2	4	299	1	0	0	0	0	0	0	0	1	14540	1190	42	4		4	SLC27A3	1	153750666	Silent	SNP	G	TCGA-BP-4326-01A-01D-1366-10	131536690	153750666	95499955	2	18965											
SELE	6401	hgsc.bcm.edu	37	1	169701011	169701011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	169701011	C	A	169701011	3	1	299	1	0	0	0	0	1	0	0	0	14026	478	17	4	1378	4	SELE	1	169701011	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	15950345	169701011	79549610	3	18966											
SELE	6401	hgsc.bcm.edu;ucsc.edu	37	1	169701067	169701067	+	Silent	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	169701067	T	C	169701067	2	2	299	1	0	0	0	0	0	0	0	1	14026	1451	51	3		3	SELE	1	169701067	Silent	SNP	T	TCGA-BP-4326-01A-01D-1366-10	56	169701067	79549554	4	18967											
TOR1AIP1	26092	hgsc.bcm.edu;ucsc.edu	37	1	179869288	179869288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	179869288	A	G	179869288	3	3	299	1	0	0	0	0	1	0	0	0	16384	101	4	3	652	3	TOR1AIP1	1	179869288	Missense_Mutation	SNP	A	TCGA-BP-4326-01A-01D-1366-10	10168221	179869288	69381333	5	18968											
NR5A2	2494	hgsc.bcm.edu;ucsc.edu	37	1	200014705	200014705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	200014705	G	T	200014705	3	4	299	1	0	0	0	0	1	0	0	0	10643	962	34	4	470	4	NR5A2	1	200014705	Missense_Mutation	SNP	G	TCGA-BP-4326-01A-01D-1366-10	20145417	200014705	49235916	6	18969											
ATP6V1C2	245973	hgsc.bcm.edu;ucsc.edu	37	2	10923347	10923347	+	Silent	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	10923347	T	C	10923347	2	2	299	1	0	0	0	0	0	0	0	1	1181	1780	62	3		3	ATP6V1C2	2	10923347	Silent	SNP	T	TCGA-BP-4326-01A-01D-1366-10		10923347	232276026	7	18970											
CAD	790	hgsc.bcm.edu;ucsc.edu	37	2	27449432	27449432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	27449432	T	C	27449432	3	2	299	1	0	0	0	0	1	0	0	0	2567	1551	54	3	2125	3	CAD	2	27449432	Missense_Mutation	SNP	T	TCGA-BP-4326-01A-01D-1366-10	16526085	27449432	215749941	8	18971											
TMEM131	23505	hgsc.bcm.edu;ucsc.edu	37	2	98373848	98373848	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	98373848	T	C	98373848	5	2	299	1	0	0	0	0	0	0	1	0	16056	1594	55	3	289	3	TMEM131	2	98373848	Splice_Site	SNP	T	TCGA-BP-4326-01A-01D-1366-10	70924416	98373848	144825525	9	18972											
RALB	5899	hgsc.bcm.edu	37	2	121036308	121036308	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	121036308	G	C	121036308	3	2	299	1	0	0	0	0	1	0	0	0	13024	1174	41	4	70	4	RALB	2	121036308	Missense_Mutation	SNP	G	TCGA-BP-4326-01A-01D-1366-10	22662460	121036308	122163065	10	18973											
TTN	7273	hgsc.bcm.edu	37	2	179464025	179464025	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	179464025	C	T	179464025	4	4	299	1	0	0	0	0	0	1	0	0	16747	595	21	2	51490	2	TTN	2	179464025	Nonsense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	58427717	179464025	63735348	11	18974											
NDUFS1	4719	ucsc.edu	37	2	207006752	207006758	+	Frame_Shift_Del	DEL	GCAATTG	GCAATTG	-	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	GCAATTG	GCAATTG	GCAATTG	-	GCAATTG	GCAATTG	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	-	207006758	GCAATTG	-	207006752	7	5	299	1	0	1	0	1	0	0	0	0	10298	971	34	0	1040	0	NDUFS1	2	207006752	Frame_Shift_Del	DEL	GCAATTG	TCGA-BP-4326-01A-01D-1366-10	27542727	207006752	36192621	12	18975											
CCDC108	255101	hgsc.bcm.edu	37	2	219875351	219875351	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	219875351	T	A	219875351	3	1	299	1	0	0	0	0	1	0	0	0	2745	1406	49	5	1592	5	CCDC108	2	219875351	Missense_Mutation	SNP	T	TCGA-BP-4326-01A-01D-1366-10	12868599	219875351	23324022	13	18976											
ROPN1	54763	hgsc.bcm.edu	37	3	123694287	123694287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	123694287	C	T	123694287	3	4	299	1	0	0	0	0	1	0	0	0	13536	768	27	1	315	1	ROPN1	3	123694287	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10		123694287	74328143	14	18977											
WDFY3	23001	hgsc.bcm.edu;ucsc.edu	37	4	85724467	85724467	+	Silent	SNP	A	A	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	85724467	A	T	85724467	2	4	299	1	0	0	0	0	0	0	0	1	17282	175	7	5		5	WDFY3	4	85724467	Silent	SNP	A	TCGA-BP-4326-01A-01D-1366-10		85724467	105429809	15	18978											
SPINK9	643394	hgsc.bcm.edu;ucsc.edu	37	5	147718053	147718053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	147718053	C	T	147718053	3	4	299	1	0	0	0	0	1	0	0	0	15078	826	29	2	110	2	SPINK9	5	147718053	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10		147718053	33197207	16	18979											
HRH2	3274	hgsc.bcm.edu;ucsc.edu	37	5	175111276	175111276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	175111276	G	T	175111276	3	4	299	1	0	0	0	0	1	0	0	0	7363	1232	43	4	1042	4	HRH2	5	175111276	Missense_Mutation	SNP	G	TCGA-BP-4326-01A-01D-1366-10	27393223	175111276	5803984	17	18980											
SLC17A2	10246	hgsc.bcm.edu;ucsc.edu	37	6	25923943	25923943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	25923943	T	C	25923943	3	2	299	1	0	0	0	0	1	0	0	0	14430	1464	51	3	1126	3	SLC17A2	6	25923943	Missense_Mutation	SNP	T	TCGA-BP-4326-01A-01D-1366-10		25923943	145191124	18	18981											
EPDR1	54749	hgsc.bcm.edu	37	7	37960275	37960275	+	Missense_Mutation	SNP	C	C	A	rs62443108	by1000genomes	TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	37960275	C	A	37960275	3	1	299	1	0	0	0	0	1	0	0	0	5165	711	25	4	96	4	EPDR1	7	37960275	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10		37960275	121178388	19	18982											
INHBA	3624	hgsc.bcm.edu	37	7	41729840	41729840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	41729840	A	G	41729840	3	3	299	1	0	0	0	0	1	0	0	0	7748	131	5	3	595	3	INHBA	7	41729840	Missense_Mutation	SNP	A	TCGA-BP-4326-01A-01D-1366-10	3769565	41729840	117408823	20	18983											
ZNF713	349075	hgsc.bcm.edu	37	7	55991394	55991394	+	Splice_Site	SNP	T	T	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	55991394	T	A	55991394	5	1	299	1	0	0	0	0	0	0	1	0	18129	1652	57	5	280	5	ZNF713	7	55991394	Splice_Site	SNP	T	TCGA-BP-4326-01A-01D-1366-10	14261554	55991394	103147269	21	18984											
ZNF92	168374	hgsc.bcm.edu;ucsc.edu	37	7	64852852	64852852	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	64852852	C	G	64852852	3	3	299	1	0	0	0	0	1	0	0	0	18213	913	32	4	47	4	ZNF92	7	64852852	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	8861458	64852852	94285811	22	18985											
SLC7A13	157724	hgsc.bcm.edu	37	8	87229702	87229702	+	Silent	SNP	A	A	G	rs4546639	bycluster;byfrequency;by1000genomes	TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	87229702	A	G	87229702	2	3	299	1	0	0	0	0	0	0	0	1	14708	456	16	3		3	SLC7A13	8	87229702	Silent	SNP	A	TCGA-BP-4326-01A-01D-1366-10		87229702	59134320	23	18986											
PKHD1L1	93035	hgsc.bcm.edu	37	8	110530539	110530539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	110530539	T	C	110530539	3	2	299	1	0	0	0	0	1	0	0	0	11979	1435	50	3	12123	3	PKHD1L1	8	110530539	Missense_Mutation	SNP	T	TCGA-BP-4326-01A-01D-1366-10	23300837	110530539	35833483	24	18987											
ASAP1	50807	hgsc.bcm.edu;ucsc.edu	37	8	131130417	131130417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	131130417	C	A	131130417	3	1	299	1	0	0	0	0	1	0	0	0	1010	478	17	4	1563	4	ASAP1	8	131130417	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	20599878	131130417	15233605	25	18988											
PTP4A3	11156	hgsc.bcm.edu;ucsc.edu	37	8	142437880	142437880	+	Silent	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	142437880	T	C	142437880	2	2	299	1	0	0	0	0	0	0	0	1	12783	1800	63	3		3	PTP4A3	8	142437880	Silent	SNP	T	TCGA-BP-4326-01A-01D-1366-10	11307463	142437880	3926142	26	18989											
TRPM6	140803	hgsc.bcm.edu	37	9	77436728	77436728	+	Silent	SNP	C	C	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	77436728	C	A	77436728	2	1	299	1	0	0	0	0	0	0	0	1	16602	581	21	4		4	TRPM6	9	77436728	Silent	SNP	C	TCGA-BP-4326-01A-01D-1366-10		77436728	63776703	27	18990											
ARHGAP21	57584	hgsc.bcm.edu;ucsc.edu	37	10	24886905	24886905	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	24886905	G	A	24886905	4	1	299	1	0	0	0	0	0	1	0	0	871	1066	37	1	2758	1	ARHGAP21	10	24886905	Nonsense_Mutation	SNP	G	TCGA-BP-4326-01A-01D-1366-10		24886905	110647842	28	18991											
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89653858	89653860	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	TGT	TGT	TGT	-	TGT	TGT	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	-	89653860	TGT	-	89653858	7	5	299	1	0	1	0	1	0	0	0	0	12748	1461	51	0	162	0	PTEN	10	89653858	In_Frame_Del	DEL	TGT	TCGA-BP-4326-01A-01D-1366-10	64766953	89653858	45880889	29	18992	244	2									
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89653859	89653861	+	In_Frame_Del	DEL	GTA	GTA	-	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	GTA	GTA	GTA	-	GTA	GTA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	-	89653861	GTA	-	89653859	7	5	299	1	0	1	0	1	0	0	0	0	12748	1377	48	0	163	0	PTEN	10	89653859	In_Frame_Del	DEL	GTA	TCGA-BP-4326-01A-01D-1366-10	1	89653859	45880888	30	18993	244	2									
ANO2	57101	hgsc.bcm.edu;ucsc.edu	37	12	5744453	5744453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	5744453	C	T	5744453	3	4	299	1	0	0	0	0	1	0	0	0	697	768	27	1	1355	1	ANO2	12	5744453	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10		5744453	128107442	31	18994											
C1RL	51279	hgsc.bcm.edu	37	12	7249550	7249550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	7249550	C	A	7249550	3	1	299	1	0	0	0	0	1	0	0	0	1975	478	17	4	566	4	C1RL	12	7249550	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	1505097	7249550	126602345	32	18995											
PFKM	5213	hgsc.bcm.edu;ucsc.edu	37	12	48526705	48526705	+	Nonsense_Mutation	SNP	C	C	T	rs138893744		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	48526705	C	T	48526705	4	4	299	1	0	0	0	0	0	1	0	0	11772	528	19	1	527	1	PFKM	12	48526705	Nonsense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	41277155	48526705	85325190	33	18996											
KRT77	374454	hgsc.bcm.edu	37	12	53086577	53086577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	53086577	G	T	53086577	3	4	299	1	0	0	0	0	1	0	0	0	8497	1357	47	4	584	4	KRT77	12	53086577	Missense_Mutation	SNP	G	TCGA-BP-4326-01A-01D-1366-10	4559872	53086577	80765318	34	18997											
DHX37	57647	hgsc.bcm.edu;ucsc.edu	37	12	125435249	125435249	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	125435249	C	G	125435249	3	3	299	1	0	0	0	0	1	0	0	0	4512	912	32	4	527	4	DHX37	12	125435249	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	72348672	125435249	8416646	35	18998											
LATS2	26524	hgsc.bcm.edu;ucsc.edu	37	13	21557669	21557669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	21557669	C	T	21557669	3	4	299	1	0	0	0	0	1	0	0	0	8654	835	29	2	1106	2	LATS2	13	21557669	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10		21557669	93612209	36	18999											
SLITRK1	114798	hgsc.bcm.edu;ucsc.edu	37	13	84453865	84453865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	84453865	C	A	84453865	3	1	299	1	0	0	0	0	1	0	0	0	14755	565	20	4	316	4	SLITRK1	13	84453865	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	62896196	84453865	30716013	37	19000											
IL25	64806	hgsc.bcm.edu	37	14	23844833	23844833	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	23844833	G	A	23844833	5	1	299	1	0	0	0	0	0	0	1	0	7685	1014	35	2	297	2	IL25	14	23844833	Splice_Site	SNP	G	TCGA-BP-4326-01A-01D-1366-10		23844833	83504707	38	19001											
COCH	1690	hgsc.bcm.edu;ucsc.edu	37	14	31348659	31348659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	31348659	G	A	31348659	3	1	299	1	0	0	0	0	1	0	0	0	3658	1174	41	2	422	2	COCH	14	31348659	Missense_Mutation	SNP	G	TCGA-BP-4326-01A-01D-1366-10	7503826	31348659	76000881	39	19002											
DUOX1	53905	hgsc.bcm.edu	37	15	45436426	45436426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	45436426	A	G	45436426	3	3	299	1	0	0	0	0	1	0	0	0	4802	449	16	3	2191	3	DUOX1	15	45436426	Missense_Mutation	SNP	A	TCGA-BP-4326-01A-01D-1366-10		45436426	57094966	40	19003											
TRIP4	9325	hgsc.bcm.edu;ucsc.edu	37	15	64717797	64717797	+	Silent	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	64717797	T	C	64717797	2	2	299	1	0	0	0	0	0	0	0	1	16570	1800	63	3		3	TRIP4	15	64717797	Silent	SNP	T	TCGA-BP-4326-01A-01D-1366-10	19281371	64717797	37813595	41	19004											
SH2D7	646892	hgsc.bcm.edu;ucsc.edu	37	15	78385103	78385103	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	78385103	G	A	78385103	5	1	299	1	0	0	0	0	0	0	1	0	14252	1043	36	2	179	2	SH2D7	15	78385103	Splice_Site	SNP	G	TCGA-BP-4326-01A-01D-1366-10	13667306	78385103	24146289	42	19005											
TMC7	79905	hgsc.bcm.edu	37	16	19070743	19070743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	19070743	T	C	19070743	3	2	299	1	0	0	0	0	1	0	0	0	16002	1435	50	3	2091	3	TMC7	16	19070743	Missense_Mutation	SNP	T	TCGA-BP-4326-01A-01D-1366-10		19070743	71284010	43	19006											
NF1	4763	hgsc.bcm.edu;ucsc.edu	37	17	29670103	29670103	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	29670103	T	G	29670103	3	3	299	1	0	0	0	0	1	0	0	0	10363	1551	54	5	7390	5	NF1	17	29670103	Missense_Mutation	SNP	T	TCGA-BP-4326-01A-01D-1366-10		29670103	51525107	44	19007											
CWC25	54883	hgsc.bcm.edu;ucsc.edu	37	17	36959026	36959026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	36959026	T	C	36959026	3	2	299	1	0	0	0	0	1	0	0	0	4071	1821	63	3	195	3	CWC25	17	36959026	Missense_Mutation	SNP	T	TCGA-BP-4326-01A-01D-1366-10	7288923	36959026	44236184	45	19008											
KAT2A	2648	hgsc.bcm.edu	37	17	40269163	40269163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	40269163	C	A	40269163	3	1	299	1	0	0	0	0	1	0	0	0	7988	739	26	4	891	4	KAT2A	17	40269163	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	3310137	40269163	40926047	46	19009											
CPAMD8	27151	hgsc.bcm.edu;ucsc.edu	37	19	17068709	17068709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	17068709	T	C	17068709	3	2	299	1	0	0	0	0	1	0	0	0	3797	1608	56	3	3523	3	CPAMD8	19	17068709	Missense_Mutation	SNP	T	TCGA-BP-4326-01A-01D-1366-10		17068709	42060274	47	19010											
ZNF550	162972	hgsc.bcm.edu;ucsc.edu	37	19	58067635	58067635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	58067635	C	T	58067635	3	4	299	1	0	0	0	0	1	0	0	0	17994	507	18	2	1062	2	ZNF550	19	58067635	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	40998926	58067635	1061348	48	19011											
COL20A1	57642	hgsc.bcm.edu	37	20	61929274	61929274	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	61929274	T	A	61929274	3	1	299	1	0	0	0	0	1	0	0	0	3681	1580	55	5	101	5	COL20A1	20	61929274	Missense_Mutation	SNP	T	TCGA-BP-4326-01A-01D-1366-10		61929274	1096246	49	19012											
MRAP	56246	hgsc.bcm.edu	37	21	33684178	33684178	+	Silent	SNP	C	C	G	rs17855143	bycluster;byfrequency;by1000genomes	TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	33684178	C	G	33684178	2	3	299	1	0	0	0	0	0	0	0	1	9760	668	24	4		4	MRAP	21	33684178	Silent	SNP	C	TCGA-BP-4326-01A-01D-1366-10		33684178	14445717	50	19013											
MYO18B	84700	hgsc.bcm.edu;ucsc.edu	37	22	26348307	26348307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	26348307	C	A	26348307	3	1	299	1	0	0	0	0	1	0	0	0	10073	739	26	4	6034	4	MYO18B	22	26348307	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10		26348307	24956259	51	19014											
SMTN	6525	hgsc.bcm.edu	37	22	31496960	31496960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	31496960	A	G	31496960	3	3	299	1	0	0	0	0	1	0	0	0	14827	188	7	3	2767	3	SMTN	22	31496960	Missense_Mutation	SNP	A	TCGA-BP-4326-01A-01D-1366-10	5148653	31496960	19807606	52	19015											
KCNJ4	3761	hgsc.bcm.edu	37	22	38823945	38823945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	38823945	C	T	38823945	3	4	299	1	0	0	0	0	1	0	0	0	8060	739	26	2	1148	2	KCNJ4	22	38823945	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	7326985	38823945	12480621	53	19016											
ZNF182	7569	hgsc.bcm.edu;ucsc.edu	37	X	47836677	47836677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	C	47836677	G	C	47836677	3	2	299	1	0	0	0	0	1	0	0	0	17762	971	34	4	1114	4	ZNF182	23	47836677	Missense_Mutation	SNP	G	TCGA-BP-4326-01A-01D-1366-10		47836677	107433883	54	19017											
FOXP3	50943	hgsc.bcm.edu	37	X	49113206	49113206	+	Splice_Site	SNP	A	A	T	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	T	49113206	A	T	49113206	5	4	299	1	0	0	0	0	0	0	1	0	6035	173	6	5	674	5	FOXP3	23	49113206	Splice_Site	SNP	A	TCGA-BP-4326-01A-01D-1366-10	1276529	49113206	106157354	55	19018											
CYLC1	1538	hgsc.bcm.edu;ucsc.edu	37	X	83128851	83128851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	83128851	G	A	83128851	3	1	299	1	0	0	0	0	1	0	0	0	4143	1174	41	2	1149	2	CYLC1	23	83128851	Missense_Mutation	SNP	G	TCGA-BP-4326-01A-01D-1366-10	34015645	83128851	72141709	56	19019											
CAPN6	827	hgsc.bcm.edu	37	X	110494190	110494190	+	Silent	SNP	T	T	G	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	110494190	T	G	110494190	2	3	299	1	0	0	0	0	0	0	0	1	2632	1567	55	5		5	CAPN6	23	110494190	Silent	SNP	T	TCGA-BP-4326-01A-01D-1366-10	27365339	110494190	44776370	57	19020											
NKAP	79576	hgsc.bcm.edu;ucsc.edu	37	X	119059315	119059315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	A	119059315	C	A	119059315	3	1	299	1	0	0	0	0	1	0	0	0	10446	912	32	4	135	4	NKAP	23	119059315	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	8565125	119059315	36211245	58	19021											
FLNA	2316	hgsc.bcm.edu	37	X	153593804	153593804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4326-01A-01D-1366-10	TCGA-BP-4326-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a8e77f8d-f08e-4686-9a40-f5298529da15	fa112d8a-9ce9-4c3f-83ee-0c449f2fc9a9	G	153593804	C	G	153593804	3	3	299	1	0	0	0	0	1	0	0	0	5940	623	22	4	6619	4	FLNA	23	153593804	Missense_Mutation	SNP	C	TCGA-BP-4326-01A-01D-1366-10	34534489	153593804	1676756	59	19022											
PUM1	9698	hgsc.bcm.edu;ucsc.edu	37	1	31479895	31479895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	31479895	G	T	31479895	3	4	300	1	0	0	0	0	1	0	0	0	12838	1261	44	4	3155	4	PUM1	1	31479895	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10		31479895	217770726	1	19023											
AHCYL1	10768	hgsc.bcm.edu;ucsc.edu	37	1	110553923	110553923	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	110553923	T	A	110553923	3	1	300	1	0	0	0	0	1	0	0	0	410	1696	59	5	330	5	AHCYL1	1	110553923	Missense_Mutation	SNP	T	TCGA-BP-4329-01A-02D-1366-10	79074028	110553923	138696698	2	19024											
NPR1	4881	hgsc.bcm.edu	37	1	153660245	153660246	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	-	153660246	GT	-	153660245	7	5	300	1	0	1	0	1	0	0	0	0	10601	1261	44	0	2282	0	NPR1	1	153660245	Frame_Shift_Del	DEL	GT	TCGA-BP-4329-01A-02D-1366-10	43106322	153660245	95590376	3	19025											
FAM129A	116496	hgsc.bcm.edu	37	1	184764659	184764659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	184764659	C	T	184764659	3	4	300	1	0	0	0	0	1	0	0	0	5440	922	32	2	551	2	FAM129A	1	184764659	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10	31104414	184764659	64485962	4	19026											
CR1	1378	hgsc.bcm.edu;ucsc.edu	37	1	207791580	207791580	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	G	207791580	C	G	207791580	3	3	300	1	0	0	0	0	1	0	0	0	3842	826	29	4	7220	4	CR1	1	207791580	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10	23026921	207791580	41459041	5	19027											
SMYD2	56950	hgsc.bcm.edu;ucsc.edu	37	1	214488133	214488133	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	C	214488133	A	C	214488133	3	2	300	1	0	0	0	0	1	0	0	0	14835	246	9	5	276	5	SMYD2	1	214488133	Missense_Mutation	SNP	A	TCGA-BP-4329-01A-02D-1366-10	6696553	214488133	34762488	6	19028											
CENPF	1063	hgsc.bcm.edu	37	1	214815523	214815523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	214815523	C	T	214815523	3	4	300	1	0	0	0	0	1	0	0	0	3233	478	17	2	3884	2	CENPF	1	214815523	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10	327390	214815523	34435098	7	19029											
AFF3	3899	hgsc.bcm.edu	37	2	100623382	100623382	+	Silent	SNP	G	G	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	100623382	G	A	100623382	2	1	300	1	0	0	0	0	0	0	0	1	358	1219	43	2		2	AFF3	2	100623382	Silent	SNP	G	TCGA-BP-4329-01A-02D-1366-10		100623382	142575991	8	19030											
RGPD5	84220	hgsc.bcm.edu	37	2	110602778	110602778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	110602778	G	A	110602778	3	1	300	1	0	0	0	0	1	0	0	0	13302	1175	41	2	5219	2	RGPD5	2	110602778	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	9979396	110602778	132596595	9	19031											
R3HDM1	23518	hgsc.bcm.edu	37	2	136409444	136409444	+	Missense_Mutation	SNP	C	C	T	rs112729561	alternate_allele	TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	136409444	C	T	136409444	3	4	300	1	0	0	0	0	1	0	0	0	12900	623	22	2	1823	2	R3HDM1	2	136409444	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10	25806666	136409444	106789929	10	19032											
TNS1	7145	hgsc.bcm.edu;ucsc.edu	37	2	218673368	218673368	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	218673368	A	T	218673368	3	4	300	1	0	0	0	0	1	0	0	0	16355	304	11	5	231	5	TNS1	2	218673368	Missense_Mutation	SNP	A	TCGA-BP-4329-01A-02D-1366-10	82263924	218673368	24526005	11	19033											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188243	10188243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	C	10188243	T	C	10188243	3	2	300	1	0	0	0	0	1	0	0	0	17174	1580	55	3	392	3	VHL	3	10188243	Missense_Mutation	SNP	T	TCGA-BP-4329-01A-02D-1366-10		10188243	187834187	12	19034											
SETD2	29072	hgsc.bcm.edu	37	3	47155365	47155365	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	47155365	C	T	47155365	5	4	300	1	0	0	0	0	0	0	1	0	14144	550	19	1	3046	1	SETD2	3	47155365	Splice_Site	SNP	C	TCGA-BP-4329-01A-02D-1366-10	36967122	47155365	150867065	13	19035											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52712580	52712580	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	52712580	G	A	52712580	4	1	300	1	0	0	0	0	0	1	0	0	11498	1124	39	1	4844	1	PBRM1	3	52712580	Nonsense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	5557215	52712580	145309850	14	19036											
SLC41A3	54946	hgsc.bcm.edu;ucsc.edu	37	3	125725333	125725333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	125725333	G	T	125725333	3	4	300	1	0	0	0	0	1	0	0	0	14644	1261	44	4	86	4	SLC41A3	3	125725333	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	73012753	125725333	72297097	15	19037											
RPL22L1	200916	hgsc.bcm.edu;ucsc.edu	37	3	170584200	170584200	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	170584200	T	A	170584200	3	1	300	1	0	0	0	0	1	0	0	0	13582	1812	63	5	34	5	RPL22L1	3	170584200	Missense_Mutation	SNP	T	TCGA-BP-4329-01A-02D-1366-10	44858867	170584200	27438230	16	19038											
STAP1	26228	hgsc.bcm.edu;ucsc.edu	37	4	68436805	68436805	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	68436805	T	A	68436805	3	1	300	1	0	0	0	0	1	0	0	0	15264	1638	57	5	130	5	STAP1	4	68436805	Missense_Mutation	SNP	T	TCGA-BP-4329-01A-02D-1366-10		68436805	122717471	17	19039											
HELQ	113510	hgsc.bcm.edu	37	4	84350864	84350864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	84350864	C	T	84350864	3	4	300	1	0	0	0	0	1	0	0	0	7054	826	29	2	1002	2	HELQ	4	84350864	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10	15914059	84350864	106803412	18	19040											
HPGDS	27306	hgsc.bcm.edu;ucsc.edu	37	4	95229888	95229888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	95229888	G	A	95229888	3	1	300	1	0	0	0	0	1	0	0	0	7342	971	34	2	378	2	HPGDS	4	95229888	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	10879024	95229888	95924388	19	19041											
MMAA	166785	hgsc.bcm.edu;ucsc.edu	37	4	146560425	146560425	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	C	146560425	A	C	146560425	3	2	300	1	0	0	0	0	1	0	0	0	9646	101	4	5	136	5	MMAA	4	146560425	Missense_Mutation	SNP	A	TCGA-BP-4329-01A-02D-1366-10	51330537	146560425	44593851	20	19042											
ZDHHC11	79844	hgsc.bcm.edu;ucsc.edu	37	5	819652	819653	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	C	819653	-	C	819652	7	5	300	1	0	1	1	0	0	0	0	0	17613	958	34	0	116	0	ZDHHC11	5	819652	Frame_Shift_Ins	INS	-	TCGA-BP-4329-01A-02D-1366-10		819652	180095608	21	19043											
CPLX2	10814	hgsc.bcm.edu	37	5	175306957	175306957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	175306957	G	A	175306957	3	1	300	1	0	0	0	0	1	0	0	0	3807	1319	46	2	324	2	CPLX2	5	175306957	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	174487305	175306957	5608303	22	19044											
MAPK9	5601	hgsc.bcm.edu	37	5	179676014	179676014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	179676014	C	T	179676014	3	4	300	1	0	0	0	0	1	0	0	0	9294	652	23	1	849	1	MAPK9	5	179676014	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10	4369057	179676014	1239246	23	19045											
RIOK1	83732	hgsc.bcm.edu;ucsc.edu	37	6	7405162	7405162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	7405162	G	T	7405162	3	4	300	1	0	0	0	0	1	0	0	0	13390	1174	41	4	1046	4	RIOK1	6	7405162	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10		7405162	163709905	24	19046											
UBAP2	55833	hgsc.bcm.edu	37	9	33986810	33986810	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	33986810	A	T	33986810	3	4	300	1	0	0	0	0	1	0	0	0	16849	98	4	5	2987	5	UBAP2	9	33986810	Missense_Mutation	SNP	A	TCGA-BP-4329-01A-02D-1366-10		33986810	107226621	25	19047											
RORB	6096	hgsc.bcm.edu;ucsc.edu	37	9	77282715	77282715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	77282715	G	A	77282715	3	1	300	1	0	0	0	0	1	0	0	0	13542	1290	45	2	1039	2	RORB	9	77282715	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	43295905	77282715	63930716	26	19048											
GLE1	2733	hgsc.bcm.edu	37	9	131267089	131267089	+	Missense_Mutation	SNP	C	C	G	rs150246404	byfrequency	TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	G	131267089	C	G	131267089	3	3	300	1	0	0	0	0	1	0	0	0	6442	652	23	4	7	4	GLE1	9	131267089	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10	53984374	131267089	9946342	27	19049											
NOTCH1	4851	hgsc.bcm.edu	37	9	139399349	139399349	+	Silent	SNP	G	G	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	139399349	G	A	139399349	2	1	300	1	0	0	0	0	0	0	0	1	10554	1074	38	1		1	NOTCH1	9	139399349	Silent	SNP	G	TCGA-BP-4329-01A-02D-1366-10	8132260	139399349	1814082	28	19050											
SFXN4	119559	hgsc.bcm.edu;ucsc.edu	37	10	120900791	120900791	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	C	120900791	G	C	120900791	3	2	300	1	0	0	0	0	1	0	0	0	14210	1377	48	4	40	4	SFXN4	10	120900791	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10		120900791	14633956	29	19051											
ECHS1	1892	hgsc.bcm.edu;ucsc.edu	37	10	135179506	135179506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	135179506	G	T	135179506	3	4	300	1	0	0	0	0	1	0	0	0	4898	1087	38	4	171	4	ECHS1	10	135179506	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	14278715	135179506	355241	30	19052											
LRRC55	219527	hgsc.bcm.edu	37	11	56950122	56950122	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	C	56950122	A	C	56950122	3	2	300	1	0	0	0	0	1	0	0	0	9018	72	3	5	757	5	LRRC55	11	56950122	Missense_Mutation	SNP	A	TCGA-BP-4329-01A-02D-1366-10		56950122	78056394	31	19053											
PDZRN4	29951	hgsc.bcm.edu	37	12	41966392	41966392	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	41966392	A	T	41966392	3	4	300	1	0	0	0	0	1	0	0	0	11717	304	11	5	1922	5	PDZRN4	12	41966392	Missense_Mutation	SNP	A	TCGA-BP-4329-01A-02D-1366-10		41966392	91885503	32	19054											
OAS3	4940	hgsc.bcm.edu;ucsc.edu	37	12	113405908	113405908	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	G	113405908	C	G	113405908	4	3	300	1	0	0	0	0	0	1	0	0	10808	576	20	4	3087	4	OAS3	12	113405908	Nonsense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10	71439516	113405908	20445987	33	19055											
MAP4K5	11183	hgsc.bcm.edu;ucsc.edu	37	14	50952347	50952348	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	-	50952348	AT	-	50952347	7	5	300	1	0	1	0	1	0	0	0	0	9270	217	8	0	2381	0	MAP4K5	14	50952347	Frame_Shift_Del	DEL	AT	TCGA-BP-4329-01A-02D-1366-10		50952347	56397193	34	19056											
SGK269	0	hgsc.bcm.edu;ucsc.edu	37	15	77407312	77407312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	77407312	C	T	77407312	3	4	300	1	0	0	0	0	1	0	0	0	14224	884	31	1	817	1	SGK269	15	77407312	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10		77407312	25124080	35	19057											
RASGRF1	5923	hgsc.bcm.edu;ucsc.edu	37	15	79317727	79317727	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	C	79317727	G	C	79317727	3	2	300	1	0	0	0	0	1	0	0	0	13085	1386	48	4	2426	4	RASGRF1	15	79317727	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	1910415	79317727	23213665	36	19058											
GLG1	2734	hgsc.bcm.edu;ucsc.edu	37	16	74506246	74506246	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	74506246	C	T	74506246	5	4	300	1	0	0	0	0	0	0	1	0	6443	550	19	1	1555	1	GLG1	16	74506246	Splice_Site	SNP	C	TCGA-BP-4329-01A-02D-1366-10		74506246	15848507	37	19059											
PKD1L2	114780	hgsc.bcm.edu;ucsc.edu	37	16	81232574	81232574	+	Silent	SNP	T	T	C	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	C	81232574	T	C	81232574	2	2	300	1	0	0	0	0	0	0	0	1	11972	1548	54	3		3	PKD1L2	16	81232574	Silent	SNP	T	TCGA-BP-4329-01A-02D-1366-10	6726328	81232574	9122179	38	19060											
GALNS	2588	hgsc.bcm.edu;ucsc.edu	37	16	88908325	88908325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	88908325	G	T	88908325	3	4	300	1	0	0	0	0	1	0	0	0	6213	1261	44	4	1317	4	GALNS	16	88908325	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	7675751	88908325	1446428	39	19061											
SLC46A1	113235	hgsc.bcm.edu;ucsc.edu	37	17	26727778	26727778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	26727778	G	T	26727778	3	4	300	1	0	0	0	0	1	0	0	0	14657	942	33	4	217	4	SLC46A1	17	26727778	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10		26727778	54467432	40	19062											
B4GALNT2	124872	hgsc.bcm.edu	37	17	47246988	47246988	+	Silent	SNP	C	C	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	47246988	C	A	47246988	2	1	300	1	0	0	0	0	0	0	0	1	1267	610	22	4		4	B4GALNT2	17	47246988	Silent	SNP	C	TCGA-BP-4329-01A-02D-1366-10	20519210	47246988	33948222	41	19063											
GRB2	2885	hgsc.bcm.edu	37	17	73316550	73316550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	73316550	C	T	73316550	3	4	300	1	0	0	0	0	1	0	0	0	6765	478	17	2	104	2	GRB2	17	73316550	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10	26069562	73316550	7878660	42	19064											
DTNA	1837	hgsc.bcm.edu	37	18	32431802	32431802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	32431802	C	T	32431802	3	4	300	1	0	0	0	0	1	0	0	0	4790	681	24	2	1450	2	DTNA	18	32431802	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10		32431802	45645446	43	19065											
HAUS1	115106	hgsc.bcm.edu;ucsc.edu	37	18	43708041	43708041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	A	43708041	G	A	43708041	3	1	300	1	0	0	0	0	1	0	0	0	6972	1188	41	2	821	2	HAUS1	18	43708041	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	11276239	43708041	34369207	44	19066											
CNDP1	84735	hgsc.bcm.edu;ucsc.edu	37	18	72234508	72234508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	G	72234508	A	G	72234508	3	3	300	1	0	0	0	0	1	0	0	0	3595	246	9	3	618	3	CNDP1	18	72234508	Missense_Mutation	SNP	A	TCGA-BP-4329-01A-02D-1366-10	28526467	72234508	5842740	45	19067											
AP3D1	8943	hgsc.bcm.edu;ucsc.edu	37	19	2121803	2121803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	G	2121803	A	G	2121803	3	3	300	1	0	0	0	0	1	0	0	0	746	304	11	3	2664	3	AP3D1	19	2121803	Missense_Mutation	SNP	A	TCGA-BP-4329-01A-02D-1366-10		2121803	57007180	46	19068											
ICAM1	3383	hgsc.bcm.edu	37	19	10394734	10394734	+	Silent	SNP	T	T	C	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	C	10394734	T	C	10394734	2	2	300	1	0	0	0	0	0	0	0	1	7486	1799	63	3		3	ICAM1	19	10394734	Silent	SNP	T	TCGA-BP-4329-01A-02D-1366-10	8272931	10394734	48734249	47	19069											
NFKBIB	4793	hgsc.bcm.edu	37	19	39390845	39390845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	39390845	G	T	39390845	3	4	300	1	0	0	0	0	1	0	0	0	10385	1232	43	4	175	4	NFKBIB	19	39390845	Missense_Mutation	SNP	G	TCGA-BP-4329-01A-02D-1366-10	28996111	39390845	19738138	48	19070											
SEC14L4	284904	hgsc.bcm.edu;ucsc.edu	37	22	30888522	30888522	+	Silent	SNP	G	G	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	30888522	G	T	30888522	2	4	300	1	0	0	0	0	0	0	0	1	13997	987	35	4		4	SEC14L4	22	30888522	Silent	SNP	G	TCGA-BP-4329-01A-02D-1366-10		30888522	20416044	49	19071											
OGT	8473	hgsc.bcm.edu;ucsc.edu	37	X	70776831	70776831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4329-01A-02D-1366-10	TCGA-BP-4329-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	755f62a8-13ea-4def-b5b6-14b536c56ec2	bf401206-d93e-41a9-9daf-42e565f5307d	T	70776831	C	T	70776831	3	4	300	1	0	0	0	0	1	0	0	0	10854	913	32	2	1234	2	OGT	23	70776831	Missense_Mutation	SNP	C	TCGA-BP-4329-01A-02D-1366-10		70776831	84493729	50	19072											
PRAMEF12	390999	hgsc.bcm.edu	37	1	12837331	12837331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	12837331	G	T	12837331	3	4	301	1	0	0	0	0	1	0	0	0	12438	991	35	4	1051	4	PRAMEF12	1	12837331	Missense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10		12837331	236413290	1	19073											
PRAMEF12	390999	hgsc.bcm.edu	37	1	12837664	12837664	+	Silent	SNP	C	C	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	12837664	C	T	12837664	2	4	301	1	0	0	0	0	0	0	0	1	12438	784	28	2		2	PRAMEF12	1	12837664	Silent	SNP	C	TCGA-BP-4330-01A-01D-1366-10	333	12837664	236412957	2	19074	245	2									
PRAMEF12	390999	hgsc.bcm.edu	37	1	12837669	12837669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	12837669	G	T	12837669	3	4	301	1	0	0	0	0	1	0	0	0	12438	1203	42	4	1389	4	PRAMEF12	1	12837669	Missense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10	5	12837669	236412952	3	19075	245	2									
LIX1L	128077	hgsc.bcm.edu	37	1	145497422	145497422	+	Missense_Mutation	SNP	T	T	A	rs189730184	by1000genomes	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	145497422	T	A	145497422	3	1	301	1	0	0	0	0	1	0	0	0	8839	1403	49	5	641	5	LIX1L	1	145497422	Missense_Mutation	SNP	T	TCGA-BP-4330-01A-01D-1366-10	132659753	145497422	103753199	4	19076											
COPA	1314	hgsc.bcm.edu;ucsc.edu	37	1	160261203	160261203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	160261203	C	A	160261203	3	1	301	1	0	0	0	0	1	0	0	0	3729	796	28	4	344	4	COPA	1	160261203	Missense_Mutation	SNP	C	TCGA-BP-4330-01A-01D-1366-10	14763781	160261203	88989418	5	19077											
OR14I1	401994	hgsc.bcm.edu;ucsc.edu	37	1	248845202	248845202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	248845202	G	A	248845202	3	1	301	1	0	0	0	0	1	0	0	0	10954	1377	48	2	535	2	OR14I1	1	248845202	Missense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10	88583999	248845202	405419	6	19078											
FEZ2	9637	hgsc.bcm.edu	37	2	36785599	36785599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	36785599	G	A	36785599	3	1	301	1	0	0	0	0	1	0	0	0	5831	942	33	2	112	2	FEZ2	2	36785599	Missense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10		36785599	206413774	7	19079											
EBLN2	55096	hgsc.bcm.edu;ucsc.edu	37	3	73111546	73111546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	G	73111546	A	G	73111546	3	3	301	1	0	0	0	0	1	0	0	0	4886	14	1	3	316	3	EBLN2	3	73111546	Missense_Mutation	SNP	A	TCGA-BP-4330-01A-01D-1366-10		73111546	124910884	8	19080											
ARHGAP31	57514	hgsc.bcm.edu	37	3	119133102	119133102	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	C	119133102	A	C	119133102	3	2	301	1	0	0	0	0	1	0	0	0	880	130	5	5	2372	5	ARHGAP31	3	119133102	Missense_Mutation	SNP	A	TCGA-BP-4330-01A-01D-1366-10	46021556	119133102	78889328	9	19081											
GPR149	344758	hgsc.bcm.edu	37	3	154146465	154146465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	C	154146465	T	C	154146465	3	2	301	1	0	0	0	0	1	0	0	0	6661	1435	50	3	1271	3	GPR149	3	154146465	Missense_Mutation	SNP	T	TCGA-BP-4330-01A-01D-1366-10	35013363	154146465	43875965	10	19082											
MEPE	56955	hgsc.bcm.edu;ucsc.edu	37	4	88755919	88755919	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	G	88755919	C	G	88755919	3	3	301	1	0	0	0	0	1	0	0	0	9485	608	21	4	55	4	MEPE	4	88755919	Missense_Mutation	SNP	C	TCGA-BP-4330-01A-01D-1366-10		88755919	102398357	11	19083											
TTC29	83894	hgsc.bcm.edu	37	4	147724797	147724797	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	C	147724797	A	C	147724797	3	2	301	1	0	0	0	0	1	0	0	0	16708	14	1	5	297	5	TTC29	4	147724797	Missense_Mutation	SNP	A	TCGA-BP-4330-01A-01D-1366-10	58968878	147724797	43429479	12	19084											
DAB2	1601	hgsc.bcm.edu;ucsc.edu	37	5	39381655	39381655	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	39381655	G	A	39381655	4	1	301	1	0	0	0	0	0	1	0	0	4220	1357	47	2	923	2	DAB2	5	39381655	Nonsense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10		39381655	141533605	13	19085											
ERCC8	1161	hgsc.bcm.edu;ucsc.edu	37	5	60183307	60183307	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	60183307	C	T	60183307	4	4	301	1	0	0	0	0	0	1	0	0	5221	595	21	2	116	2	ERCC8	5	60183307	Nonsense_Mutation	SNP	C	TCGA-BP-4330-01A-01D-1366-10	20801652	60183307	120731953	14	19086											
CDKL3	51265	hgsc.bcm.edu;ucsc.edu	37	5	133655130	133655130	+	Silent	SNP	T	T	C	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	C	133655130	T	C	133655130	2	2	301	1	0	0	0	0	0	0	0	1	3157	1509	53	3		3	CDKL3	5	133655130	Silent	SNP	T	TCGA-BP-4330-01A-01D-1366-10	73471823	133655130	47260130	15	19087											
NDFIP1	80762	hgsc.bcm.edu	37	5	141517333	141517333	+	Silent	SNP	G	G	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	141517333	G	T	141517333	2	4	301	1	0	0	0	0	0	0	0	1	10252	1364	48	4		4	NDFIP1	5	141517333	Silent	SNP	G	TCGA-BP-4330-01A-01D-1366-10	7862203	141517333	39397927	16	19088											
MSH5	4439	hgsc.bcm.edu	37	6	31729359	31729359	+	Silent	SNP	A	A	G	rs80093443	bycluster	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	G	31729359	A	G	31729359	2	3	301	1	0	0	0	0	0	0	0	1	9880	40	2	3		3	MSH5	6	31729359	Silent	SNP	A	TCGA-BP-4330-01A-01D-1366-10		31729359	139385708	17	19089											
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32634350	32634350	+	Missense_Mutation	SNP	T	T	C	rs76331164		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	C	32634350	T	C	32634350	3	2	301	1	0	0	0	0	1	0	0	0	7213	1667	58	3	770	3	HLA-DQB1	6	32634350	Missense_Mutation	SNP	T	TCGA-BP-4330-01A-01D-1366-10	904991	32634350	138480717	18	19090											
MICALL2	79778	hgsc.bcm.edu	37	7	1480280	1480280	+	Silent	SNP	C	C	T	rs58636013	bycluster;byfrequency;by1000genomes	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	1480280	C	T	1480280	2	4	301	1	0	0	0	0	0	0	0	1	9581	639	23	1		1	MICALL2	7	1480280	Silent	SNP	C	TCGA-BP-4330-01A-01D-1366-10		1480280	157658383	19	19091	246	2									
MICALL2	79778	hgsc.bcm.edu	37	7	1480286	1480286	+	Silent	SNP	G	G	A	rs61741872	bycluster;byfrequency;by1000genomes	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	1480286	G	A	1480286	2	1	301	1	0	0	0	0	0	0	0	1	9581	1136	40	1		1	MICALL2	7	1480286	Silent	SNP	G	TCGA-BP-4330-01A-01D-1366-10	6	1480286	157658377	20	19092	246	2									
ZNF786	136051	hgsc.bcm.edu	37	7	148768360	148768360	+	Silent	SNP	G	G	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	148768360	G	T	148768360	2	4	301	1	0	0	0	0	0	0	0	1	18170	1115	39	4		4	ZNF786	7	148768360	Silent	SNP	G	TCGA-BP-4330-01A-01D-1366-10	147288074	148768360	10370303	21	19093											
MYOM2	9172	hgsc.bcm.edu;ucsc.edu	37	8	2033423	2033423	+	Silent	SNP	C	C	T	rs144162836	byfrequency	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	2033423	C	T	2033423	2	4	301	1	0	0	0	0	0	0	0	1	10099	639	23	1		1	MYOM2	8	2033423	Silent	SNP	C	TCGA-BP-4330-01A-01D-1366-10		2033423	144330599	22	19094											
CHRNA2	1135	hgsc.bcm.edu;ucsc.edu	37	8	27319259	27319259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	G	27319259	A	G	27319259	3	3	301	1	0	0	0	0	1	0	0	0	3385	188	7	3	116	3	CHRNA2	8	27319259	Missense_Mutation	SNP	A	TCGA-BP-4330-01A-01D-1366-10	25285836	27319259	119044763	23	19095											
VCP	7415	hgsc.bcm.edu	37	9	35061687	35061687	+	Splice_Site	SNP	C	C	G	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	G	35061687	C	G	35061687	5	3	301	1	0	0	0	0	0	0	1	0	17152	695	24	4	1371	4	VCP	9	35061687	Splice_Site	SNP	C	TCGA-BP-4330-01A-01D-1366-10		35061687	106151744	24	19096											
PTCH1	5727	hgsc.bcm.edu	37	9	98211564	98211564	+	Silent	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	98211564	G	A	98211564	2	1	301	1	0	0	0	0	0	0	0	1	12740	1219	43	2		2	PTCH1	9	98211564	Silent	SNP	G	TCGA-BP-4330-01A-01D-1366-10	63149877	98211564	43001867	25	19097											
OR1L8	138881	hgsc.bcm.edu;ucsc.edu	37	9	125330260	125330260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	125330260	C	T	125330260	3	4	301	1	0	0	0	0	1	0	0	0	10974	536	19	1	436	1	OR1L8	9	125330260	Missense_Mutation	SNP	C	TCGA-BP-4330-01A-01D-1366-10	27118696	125330260	15883171	26	19098											
JMJD1C	221037	hgsc.bcm.edu	37	10	64975354	64975354	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	64975354	G	A	64975354	4	1	301	1	0	0	0	0	0	1	0	0	7957	1153	40	1	6925	1	JMJD1C	10	64975354	Nonsense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10		64975354	70559393	27	19099											
C10orf12	26148	hgsc.bcm.edu;ucsc.edu	37	10	98741230	98741230	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	98741230	T	A	98741230	3	1	301	1	0	0	0	0	1	0	0	0	1591	1493	52	5	85	5	C10orf12	10	98741230	Missense_Mutation	SNP	T	TCGA-BP-4330-01A-01D-1366-10	33765876	98741230	36793517	28	19100											
STIP1	10963	hgsc.bcm.edu	37	11	63965325	63965325	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	63965325	G	A	63965325	5	1	301	1	0	0	0	0	0	0	1	0	15297	956	33	2	932	2	STIP1	11	63965325	Splice_Site	SNP	G	TCGA-BP-4330-01A-01D-1366-10		63965325	71041191	29	19101											
ENDOD1	23052	hgsc.bcm.edu;ucsc.edu	37	11	94862593	94862593	+	Silent	SNP	T	T	G	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	G	94862593	T	G	94862593	2	3	301	1	0	0	0	0	0	0	0	1	5116	1828	64	5		5	ENDOD1	11	94862593	Silent	SNP	T	TCGA-BP-4330-01A-01D-1366-10	30897268	94862593	40143923	30	19102											
SLC38A2	54407	hgsc.bcm.edu;ucsc.edu	37	12	46760866	46760866	+	Silent	SNP	G	G	A	rs36022751	bycluster;byfrequency;by1000genomes	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	46760866	G	A	46760866	2	1	301	1	0	0	0	0	0	0	0	1	14617	1368	48	2		2	SLC38A2	12	46760866	Silent	SNP	G	TCGA-BP-4330-01A-01D-1366-10		46760866	87091029	31	19103											
RPH3A	22895	hgsc.bcm.edu;ucsc.edu	37	12	113304584	113304584	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	113304584	T	A	113304584	3	1	301	1	0	0	0	0	1	0	0	0	13564	1696	59	5	401	5	RPH3A	12	113304584	Missense_Mutation	SNP	T	TCGA-BP-4330-01A-01D-1366-10	66543718	113304584	20547311	32	19104											
DLL4	54567	hgsc.bcm.edu	37	15	41228880	41228880	+	Silent	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	41228880	G	A	41228880	2	1	301	1	0	0	0	0	0	0	0	1	4570	1223	43	2		2	DLL4	15	41228880	Silent	SNP	G	TCGA-BP-4330-01A-01D-1366-10		41228880	61302512	33	19105											
NR2F2	7026	hgsc.bcm.edu;ucsc.edu	37	15	96880591	96880591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	C	96880591	T	C	96880591	3	2	301	1	0	0	0	0	1	0	0	0	10635	1551	54	3	1042	3	NR2F2	15	96880591	Missense_Mutation	SNP	T	TCGA-BP-4330-01A-01D-1366-10	55651711	96880591	5650801	34	19106											
MYH11	4629	hgsc.bcm.edu;ucsc.edu	37	16	15931906	15931906	+	Missense_Mutation	SNP	C	C	A	rs111777997	alternate_allele	TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	15931906	C	A	15931906	3	1	301	1	0	0	0	0	1	0	0	0	10038	680	24	4	5934	4	MYH11	16	15931906	Missense_Mutation	SNP	C	TCGA-BP-4330-01A-01D-1366-10		15931906	74422847	35	19107											
ADAD2	161931	hgsc.bcm.edu	37	16	84227694	84227694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	84227694	C	A	84227694	3	1	301	1	0	0	0	0	1	0	0	0	232	854	30	4	507	4	ADAD2	16	84227694	Missense_Mutation	SNP	C	TCGA-BP-4330-01A-01D-1366-10	68295788	84227694	6127059	36	19108											
SMG6	23293	hgsc.bcm.edu	37	17	2203323	2203323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	C	2203323	T	C	2203323	3	2	301	1	0	0	0	0	1	0	0	0	14810	1850	64	3	3607	3	SMG6	17	2203323	Missense_Mutation	SNP	T	TCGA-BP-4330-01A-01D-1366-10		2203323	78991887	37	19109											
SHPK	23729	hgsc.bcm.edu;ucsc.edu	37	17	3518702	3518702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	3518702	G	T	3518702	3	4	301	1	0	0	0	0	1	0	0	0	14303	1203	42	4	491	4	SHPK	17	3518702	Missense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10	1315379	3518702	77676508	38	19110											
CACNA1G	8913	hgsc.bcm.edu	37	17	48699064	48699064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	C	48699064	T	C	48699064	3	2	301	1	0	0	0	0	1	0	0	0	2546	1493	52	3	6374	3	CACNA1G	17	48699064	Missense_Mutation	SNP	T	TCGA-BP-4330-01A-01D-1366-10	45180362	48699064	32496146	39	19111											
LAMA3	3909	hgsc.bcm.edu;ucsc.edu	37	18	21422710	21422710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	G	21422710	T	G	21422710	3	3	301	1	0	0	0	0	1	0	0	0	8614	1725	60	5	3713	5	LAMA3	18	21422710	Missense_Mutation	SNP	T	TCGA-BP-4330-01A-01D-1366-10		21422710	56654538	40	19112											
EPS15L1	58513	hgsc.bcm.edu;ucsc.edu	37	19	16552710	16552710	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	C	16552710	A	C	16552710	3	2	301	1	0	0	0	0	1	0	0	0	5195	72	3	5	2520	5	EPS15L1	19	16552710	Missense_Mutation	SNP	A	TCGA-BP-4330-01A-01D-1366-10		16552710	42576273	41	19113											
DHX34	9704	hgsc.bcm.edu	37	19	47856609	47856609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	47856609	C	T	47856609	3	4	301	1	0	0	0	0	1	0	0	0	4509	681	24	2	324	2	DHX34	19	47856609	Missense_Mutation	SNP	C	TCGA-BP-4330-01A-01D-1366-10	31303899	47856609	11272374	42	19114											
ZNF613	79898	hgsc.bcm.edu	37	19	52448101	52448101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	52448101	G	T	52448101	3	4	301	1	0	0	0	0	1	0	0	0	18050	1232	43	4	979	4	ZNF613	19	52448101	Missense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10	4591492	52448101	6680882	43	19115											
TRIM28	10155	hgsc.bcm.edu	37	19	59060881	59060881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	59060881	G	A	59060881	3	1	301	1	0	0	0	0	1	0	0	0	16514	1348	47	2	1896	2	TRIM28	19	59060881	Missense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10	6612780	59060881	68102	44	19116											
ATRN	8455	hgsc.bcm.edu	37	20	3627468	3627468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	3627468	C	A	3627468	3	1	301	1	0	0	0	0	1	0	0	0	1206	623	22	4	4400	4	ATRN	20	3627468	Missense_Mutation	SNP	C	TCGA-BP-4330-01A-01D-1366-10		3627468	59398052	45	19117											
ZNF133	7692	hgsc.bcm.edu	37	20	18297069	18297069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	18297069	G	A	18297069	3	1	301	1	0	0	0	0	1	0	0	0	17735	1058	37	1	1581	1	ZNF133	20	18297069	Missense_Mutation	SNP	G	TCGA-BP-4330-01A-01D-1366-10	14669601	18297069	44728451	46	19118											
GTSF1L	149699	hgsc.bcm.edu;ucsc.edu	37	20	42355035	42355035	+	Silent	SNP	G	G	A	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	A	42355035	G	A	42355035	2	1	301	1	0	0	0	0	0	0	0	1	6894	1194	42	2		2	GTSF1L	20	42355035	Silent	SNP	G	TCGA-BP-4330-01A-01D-1366-10	24057966	42355035	20670485	47	19119											
DIP2A	23181	hgsc.bcm.edu	37	21	47987406	47987406	+	Silent	SNP	G	G	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	47987406	G	T	47987406	2	4	301	1	0	0	0	0	0	0	0	1	4529	1335	47	4		4	DIP2A	21	47987406	Silent	SNP	G	TCGA-BP-4330-01A-01D-1366-10		47987406	142489	48	19120											
SH3KBP1	30011	hgsc.bcm.edu;ucsc.edu	37	X	19587268	19587268	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4330-01A-01D-1366-10	TCGA-BP-4330-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	601fd47a-12f9-413d-8c06-cf1f23c406cb	8e83a5db-7371-4374-838d-9c4329dd73e1	T	19587268	A	T	19587268	3	4	301	1	0	0	0	0	1	0	0	0	14268	420	15	5	684	5	SH3KBP1	23	19587268	Missense_Mutation	SNP	A	TCGA-BP-4330-01A-01D-1366-10		19587268	135683292	49	19121											
ZMYM4	9202	hgsc.bcm.edu;ucsc.edu	37	1	35859252	35859252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	35859252	G	T	35859252	3	4	302	1	0	0	0	0	1	0	0	0	17714	1281	45	4	2893	4	ZMYM4	1	35859252	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10		35859252	213391369	1	19122											
RPL5	6125	hgsc.bcm.edu	37	1	93301855	93301857	+	In_Frame_Del	DEL	TAT	TAT	-	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	TAT	TAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	-	93301857	TAT	-	93301855	7	5	302	1	0	1	0	1	0	0	0	0	13610	1522	53	0	451	0	RPL5	1	93301855	In_Frame_Del	DEL	TAT	TCGA-BP-4331-01A-01D-1366-10	57442603	93301855	155948766	2	19123											
ETV3L	440695	hgsc.bcm.edu	37	1	157062696	157062696	+	Silent	SNP	G	G	T	rs1176537	bycluster;byfrequency;by1000genomes	TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	157062696	G	T	157062696	2	4	302	1	0	0	0	0	0	0	0	1	5282	1161	41	4		4	ETV3L	1	157062696	Silent	SNP	G	TCGA-BP-4331-01A-01D-1366-10	63760841	157062696	92187925	3	19124											
ARID4B	51742	hgsc.bcm.edu	37	1	235345429	235345429	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	235345429	C	T	235345429	4	4	302	1	0	0	0	0	0	1	0	0	920	740	26	2	1153	2	ARID4B	1	235345429	Nonsense_Mutation	SNP	C	TCGA-BP-4331-01A-01D-1366-10	78282733	235345429	13905192	4	19125											
SPAST	6683	hgsc.bcm.edu;ucsc.edu	37	2	32362024	32362025	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	C	32362025	-	C	32362024	7	5	302	1	0	1	1	0	0	0	0	0	15009	1406	49	0	1442	0	SPAST	2	32362024	Frame_Shift_Ins	INS	-	TCGA-BP-4331-01A-01D-1366-10		32362024	210837349	5	19126											
IMMT	10989	hgsc.bcm.edu;ucsc.edu	37	2	86406617	86406617	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	86406617	T	A	86406617	3	1	302	1	0	0	0	0	1	0	0	0	7725	1667	58	5	2080	5	IMMT	2	86406617	Missense_Mutation	SNP	T	TCGA-BP-4331-01A-01D-1366-10	54044593	86406617	156792756	6	19127											
THNSL2	55258	hgsc.bcm.edu	37	2	88472689	88472689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	88472689	G	T	88472689	3	4	302	1	0	0	0	0	1	0	0	0	15875	1000	35	4	22	4	THNSL2	2	88472689	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10	2066072	88472689	154726684	7	19128											
SLC20A1	6574	hgsc.bcm.edu;ucsc.edu	37	2	113420443	113420443	+	Silent	SNP	G	G	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	113420443	G	T	113420443	2	4	302	1	0	0	0	0	0	0	0	1	14451	1335	47	4		4	SLC20A1	2	113420443	Silent	SNP	G	TCGA-BP-4331-01A-01D-1366-10	24947754	113420443	129778930	8	19129											
DBI	1622	hgsc.bcm.edu	37	2	120128350	120128350	+	Silent	SNP	C	C	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	120128350	C	A	120128350	2	1	302	1	0	0	0	0	0	0	0	1	4253	581	21	4		4	DBI	2	120128350	Silent	SNP	C	TCGA-BP-4331-01A-01D-1366-10	6707907	120128350	123071023	9	19130											
HDLBP	3069	hgsc.bcm.edu;ucsc.edu	37	2	242203956	242203956	+	Silent	SNP	A	A	C	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	C	242203956	A	C	242203956	2	2	302	1	0	0	0	0	0	0	0	1	7032	233	9	5		5	HDLBP	2	242203956	Silent	SNP	A	TCGA-BP-4331-01A-01D-1366-10	122075606	242203956	995417	10	19131											
MYH15	22989	hgsc.bcm.edu	37	3	108224621	108224621	+	Silent	SNP	T	T	C	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	C	108224621	T	C	108224621	2	2	302	1	0	0	0	0	0	0	0	1	10041	1741	61	3		3	MYH15	3	108224621	Silent	SNP	T	TCGA-BP-4331-01A-01D-1366-10		108224621	89797809	11	19132											
SH3D19	152503	hgsc.bcm.edu;ucsc.edu	37	4	152048840	152048840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	152048840	A	T	152048840	3	4	302	1	0	0	0	0	1	0	0	0	14262	391	14	5	194	5	SH3D19	4	152048840	Missense_Mutation	SNP	A	TCGA-BP-4331-01A-01D-1366-10		152048840	39105436	12	19133											
THBS4	7060	hgsc.bcm.edu;ucsc.edu	37	5	79351852	79351852	+	Silent	SNP	A	A	T	rs71594659	alternate_allele	TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	79351852	A	T	79351852	2	4	302	1	0	0	0	0	0	0	0	1	15868	146	6	5		5	THBS4	5	79351852	Silent	SNP	A	TCGA-BP-4331-01A-01D-1366-10		79351852	101563408	13	19134											
LOX	4015	hgsc.bcm.edu;ucsc.edu	37	5	121411209	121411209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	C	121411209	A	C	121411209	3	2	302	1	0	0	0	0	1	0	0	0	8905	98	4	5	505	5	LOX	5	121411209	Missense_Mutation	SNP	A	TCGA-BP-4331-01A-01D-1366-10	42059357	121411209	59504051	14	19135											
NMUR2	56923	hgsc.bcm.edu;ucsc.edu	37	5	151784054	151784054	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	C	151784054	G	C	151784054	3	2	302	1	0	0	0	0	1	0	0	0	10514	1280	45	4	642	4	NMUR2	5	151784054	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10	30372845	151784054	29131206	15	19136											
CYFIP2	26999	hgsc.bcm.edu;ucsc.edu	37	5	156742017	156742017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	G	156742017	A	G	156742017	3	3	302	1	0	0	0	0	1	0	0	0	4140	43	2	3	1317	3	CYFIP2	5	156742017	Missense_Mutation	SNP	A	TCGA-BP-4331-01A-01D-1366-10	4957963	156742017	24173243	16	19137											
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056015	26056015	+	Silent	SNP	C	C	T	rs11540003	alternate_allele	TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	26056015	C	T	26056015	2	4	302	1	0	0	0	0	0	0	0	1	7131	692	24	2		2	HIST1H1C	6	26056015	Silent	SNP	C	TCGA-BP-4331-01A-01D-1366-10		26056015	145059052	17	19138											
PHTF2	57157	hgsc.bcm.edu;ucsc.edu	37	7	77552042	77552042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	77552042	G	A	77552042	3	1	302	1	0	0	0	0	1	0	0	0	11870	1000	35	2	998	2	PHTF2	7	77552042	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10		77552042	81586621	18	19139											
TRPV6	55503	hgsc.bcm.edu;ucsc.edu	37	7	142575416	142575416	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	G	142575416	C	G	142575416	3	3	302	1	0	0	0	0	1	0	0	0	16612	835	29	4	1892	4	TRPV6	7	142575416	Missense_Mutation	SNP	C	TCGA-BP-4331-01A-01D-1366-10	65023374	142575416	16563247	19	19140											
HTRA4	203100	hgsc.bcm.edu;ucsc.edu	37	8	38840017	38840017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	38840017	G	T	38840017	3	4	302	1	0	0	0	0	1	0	0	0	7463	1188	41	4	1141	4	HTRA4	8	38840017	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10		38840017	107524005	20	19141											
DFNB31	25861	hgsc.bcm.edu	37	9	117165103	117165103	+	Silent	SNP	G	G	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	117165103	G	T	117165103	2	4	302	1	0	0	0	0	0	0	0	1	4457	1103	39	4		4	DFNB31	9	117165103	Silent	SNP	G	TCGA-BP-4331-01A-01D-1366-10		117165103	24048328	21	19142											
P4HA1	5033	hgsc.bcm.edu;ucsc.edu	37	10	74790028	74790028	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	74790028	C	T	74790028	5	4	302	1	0	0	0	0	0	0	1	0	11363	521	18	2	379	2	P4HA1	10	74790028	Splice_Site	SNP	C	TCGA-BP-4331-01A-01D-1366-10		74790028	60744719	22	19143											
COPB1	1315	hgsc.bcm.edu	37	11	14520433	14520433	+	Silent	SNP	C	C	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	14520433	C	T	14520433	2	4	302	1	0	0	0	0	0	0	0	1	3730	697	25	2		2	COPB1	11	14520433	Silent	SNP	C	TCGA-BP-4331-01A-01D-1366-10		14520433	120486083	23	19144											
DBX1	120237	hgsc.bcm.edu	37	11	20177783	20177783	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	20177783	G	A	20177783	4	1	302	1	0	0	0	0	0	1	0	0	4261	1386	48	2	26	2	DBX1	11	20177783	Nonsense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10	5657350	20177783	114828733	24	19145											
OR9G4	283189	hgsc.bcm.edu	37	11	56510711	56510711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	C	56510711	A	C	56510711	3	2	302	1	0	0	0	0	1	0	0	0	11258	14	1	5	409	5	OR9G4	11	56510711	Missense_Mutation	SNP	A	TCGA-BP-4331-01A-01D-1366-10	36332928	56510711	78495805	25	19146											
SIK2	23235	hgsc.bcm.edu;ucsc.edu	37	11	111558776	111558776	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	111558776	T	A	111558776	3	1	302	1	0	0	0	0	1	0	0	0	14331	1783	62	5	382	5	SIK2	11	111558776	Missense_Mutation	SNP	T	TCGA-BP-4331-01A-01D-1366-10	55048065	111558776	23447740	26	19147											
ITPR2	3709	hgsc.bcm.edu;ucsc.edu	37	12	26589195	26589195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	26589195	G	T	26589195	3	4	302	1	0	0	0	0	1	0	0	0	7928	971	34	4	1417	4	ITPR2	12	26589195	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10		26589195	107262700	27	19148											
PDE1B	5153	hgsc.bcm.edu	37	12	54963142	54963142	+	Silent	SNP	C	C	T	rs151025806	byfrequency	TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	54963142	C	T	54963142	2	4	302	1	0	0	0	0	0	0	0	1	11641	883	31	1		1	PDE1B	12	54963142	Silent	SNP	C	TCGA-BP-4331-01A-01D-1366-10	28373947	54963142	78888753	28	19149											
IRAK3	11213	hgsc.bcm.edu;ucsc.edu	37	12	66597547	66597547	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	G	66597547	C	G	66597547	3	3	302	1	0	0	0	0	1	0	0	0	7831	595	21	4	196	4	IRAK3	12	66597547	Missense_Mutation	SNP	C	TCGA-BP-4331-01A-01D-1366-10	11634405	66597547	67254348	29	19150											
TSPAN19	144448	hgsc.bcm.edu;ucsc.edu	37	12	85421765	85421765	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	85421765	A	T	85421765	3	4	302	1	0	0	0	0	1	0	0	0	16655	101	4	5	594	5	TSPAN19	12	85421765	Missense_Mutation	SNP	A	TCGA-BP-4331-01A-01D-1366-10	18824218	85421765	48430130	30	19151											
ATP2A2	488	hgsc.bcm.edu;ucsc.edu	37	12	110778740	110778740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	110778740	C	A	110778740	3	1	302	1	0	0	0	0	1	0	0	0	1137	507	18	4	2092	4	ATP2A2	12	110778740	Missense_Mutation	SNP	C	TCGA-BP-4331-01A-01D-1366-10	25356975	110778740	23073155	31	19152											
MYCBP2	23077	hgsc.bcm.edu;ucsc.edu	37	13	77730192	77730192	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	77730192	C	A	77730192	5	1	302	1	0	0	0	0	0	0	1	0	10025	521	18	4	7272	4	MYCBP2	13	77730192	Splice_Site	SNP	C	TCGA-BP-4331-01A-01D-1366-10		77730192	37439686	32	19153											
UPF3A	65110	hgsc.bcm.edu	37	13	115067470	115067470	+	Silent	SNP	A	A	G	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	G	115067470	A	G	115067470	2	3	302	1	0	0	0	0	0	0	0	1	17017	175	7	3		3	UPF3A	13	115067470	Silent	SNP	A	TCGA-BP-4331-01A-01D-1366-10	37337278	115067470	102408	33	19154											
MDGA2	161357	hgsc.bcm.edu	37	14	47566320	47566320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	47566320	G	T	47566320	3	4	302	1	0	0	0	0	1	0	0	0	9414	1116	39	4	2193	4	MDGA2	14	47566320	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10		47566320	59783220	34	19155											
SPTB	6710	hgsc.bcm.edu	37	14	65237810	65237810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	65237810	G	A	65237810	3	1	302	1	0	0	0	0	1	0	0	0	15130	1377	48	2	1504	2	SPTB	14	65237810	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10	17671490	65237810	42111730	35	19156											
TUBGCP5	114791	hgsc.bcm.edu	37	15	22836163	22836163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	22836163	G	A	22836163	3	1	302	1	0	0	0	0	1	0	0	0	16781	1175	41	2	311	2	TUBGCP5	15	22836163	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10		22836163	79695229	36	19157											
KIAA1199	57214	hgsc.bcm.edu;ucsc.edu	37	15	81224218	81224218	+	Silent	SNP	A	A	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	81224218	A	T	81224218	2	4	302	1	0	0	0	0	0	0	0	1	8220	233	9	5		5	KIAA1199	15	81224218	Silent	SNP	A	TCGA-BP-4331-01A-01D-1366-10	58388055	81224218	21307174	37	19158											
ADAMTSL3	57188	hgsc.bcm.edu;ucsc.edu	37	15	84651469	84651469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	84651469	G	T	84651469	3	4	302	1	0	0	0	0	1	0	0	0	276	1357	47	4	3167	4	ADAMTSL3	15	84651469	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10	3427251	84651469	17879923	38	19159											
CREBBP	1387	hgsc.bcm.edu	37	16	3807365	3807365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	3807365	G	T	3807365	3	4	302	1	0	0	0	0	1	0	0	0	3863	1232	43	4	3758	4	CREBBP	16	3807365	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10		3807365	86547388	39	19160											
ITGAM	3684	hgsc.bcm.edu	37	16	31309271	31309271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	31309271	G	A	31309271	3	1	302	1	0	0	0	0	1	0	0	0	7894	971	34	2	1760	2	ITGAM	16	31309271	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10	27501906	31309271	59045482	40	19161											
TRAF4	9618	hgsc.bcm.edu;ucsc.edu	37	17	27075315	27075315	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	27075315	C	A	27075315	4	1	302	1	0	0	0	0	0	1	0	0	16455	576	20	4	516	4	TRAF4	17	27075315	Nonsense_Mutation	SNP	C	TCGA-BP-4331-01A-01D-1366-10		27075315	54119895	41	19162											
CLTC	1213	hgsc.bcm.edu;ucsc.edu	37	17	57763155	57763155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	57763155	G	A	57763155	3	1	302	1	0	0	0	0	1	0	0	0	3568	1175	41	2	4931	2	CLTC	17	57763155	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10	30687840	57763155	23432055	42	19163											
TMEM49	0	hgsc.bcm.edu;ucsc.edu	37	17	57886217	57886217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	57886217	G	A	57886217	3	1	302	1	0	0	0	0	1	0	0	0	16185	1349	47	2	801	2	TMEM49	17	57886217	Missense_Mutation	SNP	G	TCGA-BP-4331-01A-01D-1366-10	123062	57886217	23308993	43	19164											
SLC8A2	6543	hgsc.bcm.edu;ucsc.edu	37	19	47940782	47940782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	47940782	C	T	47940782	3	4	302	1	0	0	0	0	1	0	0	0	14720	739	26	2	730	2	SLC8A2	19	47940782	Missense_Mutation	SNP	C	TCGA-BP-4331-01A-01D-1366-10		47940782	11188201	44	19165											
KLK2	3817	hgsc.bcm.edu	37	19	51378101	51378101	+	Silent	SNP	C	A	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	51378101	A	A	51378101	2	1	302	1	0	0	0	0	0	0	0	1	8411	610	22	4		4	KLK2	19	51378101	Silent	SNP	C	TCGA-BP-4331-01A-01D-1366-10	3437319	51378101	7750882	45	19166											
NLRP11	204801	hgsc.bcm.edu	37	19	56321350	56321350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	C	56321350	T	C	56321350	3	2	302	1	0	0	0	0	1	0	0	0	10480	1667	58	3	2507	3	NLRP11	19	56321350	Missense_Mutation	SNP	T	TCGA-BP-4331-01A-01D-1366-10	4943249	56321350	2807633	46	19167											
SULF2	55959	hgsc.bcm.edu	37	20	46365452	46365452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	A	46365452	C	A	46365452	3	1	302	1	0	0	0	0	1	0	0	0	15383	652	23	4	2278	4	SULF2	20	46365452	Missense_Mutation	SNP	C	TCGA-BP-4331-01A-01D-1366-10		46365452	16660068	47	19168											
MED14	9282	hgsc.bcm.edu;ucsc.edu	37	X	40570475	40570475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	T	40570475	A	T	40570475	3	4	302	1	0	0	0	0	1	0	0	0	9439	72	3	5	3492	5	MED14	23	40570475	Missense_Mutation	SNP	A	TCGA-BP-4331-01A-01D-1366-10		40570475	114700085	48	19169											
ATP11C	286410	hgsc.bcm.edu;ucsc.edu	37	X	138908947	138908947	+	Silent	SNP	T	T	C	novel		TCGA-BP-4331-01A-01D-1366-10	TCGA-BP-4331-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	143b6360-f9b9-456a-b409-0afaac1704be	20024ca1-456b-49e1-b984-6cf81ee6e8e9	C	138908947	T	C	138908947	2	2	302	1	0	0	0	0	0	0	0	1	1121	1567	55	3		3	ATP11C	23	138908947	Silent	SNP	T	TCGA-BP-4331-01A-01D-1366-10	98338472	138908947	16361613	49	19170											
TAS1R2	80834	hgsc.bcm.edu	37	1	19181061	19181061	+	Silent	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	19181061	G	A	19181061	2	1	303	1	0	0	0	0	0	0	0	1	15575	1103	39	1		1	TAS1R2	1	19181061	Silent	SNP	G	TCGA-BP-4337-01A-01D-1366-10		19181061	230069560	1	19171											
CLSPN	63967	hgsc.bcm.edu;ucsc.edu	37	1	36205125	36205125	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	36205125	A	T	36205125	4	4	303	1	0	0	0	0	0	1	0	0	3562	131	5	5	898	5	CLSPN	1	36205125	Nonsense_Mutation	SNP	A	TCGA-BP-4337-01A-01D-1366-10	17024064	36205125	213045496	2	19172											
RGS18	64407	hgsc.bcm.edu	37	1	192150459	192150459	+	Silent	SNP	A	A	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	G	192150459	A	G	192150459	2	3	303	1	0	0	0	0	0	0	0	1	13313	98	4	3		3	RGS18	1	192150459	Silent	SNP	A	TCGA-BP-4337-01A-01D-1366-10	155945334	192150459	57100162	3	19173											
NBAS	51594	hgsc.bcm.edu;ucsc.edu	37	2	15326915	15326915	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	15326915	A	T	15326915	4	4	303	1	0	0	0	0	0	1	0	0	10193	131	5	5	465	5	NBAS	2	15326915	Nonsense_Mutation	SNP	A	TCGA-BP-4337-01A-01D-1366-10		15326915	227872458	4	19174											
PRKD3	23683	hgsc.bcm.edu;ucsc.edu	37	2	37520414	37520414	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	37520414	A	T	37520414	3	4	303	1	0	0	0	0	1	0	0	0	12530	57	2	5	2451	5	PRKD3	2	37520414	Missense_Mutation	SNP	A	TCGA-BP-4337-01A-01D-1366-10	22193499	37520414	205678959	5	19175											
CCDC148	130940	hgsc.bcm.edu;ucsc.edu	37	2	159033038	159033038	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	159033038	G	A	159033038	4	1	303	1	0	0	0	0	0	1	0	0	2784	1386	48	2	159	2	CCDC148	2	159033038	Nonsense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10	121512624	159033038	84166335	6	19176											
SCN3A	6328	hgsc.bcm.edu;ucsc.edu	37	2	165953810	165953810	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	165953810	T	A	165953810	3	1	303	1	0	0	0	0	1	0	0	0	13931	1606	56	5	1835	5	SCN3A	2	165953810	Missense_Mutation	SNP	T	TCGA-BP-4337-01A-01D-1366-10	6920772	165953810	77245563	7	19177											
ZC3H15	55854	hgsc.bcm.edu;ucsc.edu	37	2	187370523	187370523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	187370523	G	T	187370523	3	4	303	1	0	0	0	0	1	0	0	0	17579	991	35	4	951	4	ZC3H15	2	187370523	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10	21416713	187370523	55828850	8	19178											
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52442567	52442567	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	52442567	G	A	52442567	4	1	303	1	0	0	0	0	0	1	0	0	1311	1095	38	1	2067	1	BAP1	3	52442567	Nonsense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10		52442567	145579863	9	19179											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52702660	52702660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	52702660	T	A	52702660	3	1	303	1	0	0	0	0	1	0	0	0	11498	1855	64	5	4774	5	PBRM1	3	52702660	Missense_Mutation	SNP	T	TCGA-BP-4337-01A-01D-1366-10	260093	52702660	145319770	10	19180											
MYH15	22989	hgsc.bcm.edu;ucsc.edu	37	3	108211422	108211422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	108211422	C	T	108211422	3	4	303	1	0	0	0	0	1	0	0	0	10041	507	18	2	5116	2	MYH15	3	108211422	Missense_Mutation	SNP	C	TCGA-BP-4337-01A-01D-1366-10	55508762	108211422	89811008	11	19181											
COL6A6	131873	hgsc.bcm.edu;ucsc.edu	37	3	130300711	130300711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	130300711	G	T	130300711	3	4	303	1	0	0	0	0	1	0	0	0	3705	1357	47	4	3884	4	COL6A6	3	130300711	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10	22089289	130300711	67721719	12	19182											
PPP2R3A	5523	hgsc.bcm.edu;ucsc.edu	37	3	135745814	135745814	+	Silent	SNP	C	C	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	135745814	C	T	135745814	2	4	303	1	0	0	0	0	0	0	0	1	12398	912	32	2		2	PPP2R3A	3	135745814	Silent	SNP	C	TCGA-BP-4337-01A-01D-1366-10	5445103	135745814	62276616	13	19183											
CXXC4	80319	hgsc.bcm.edu;ucsc.edu	37	4	105393489	105393489	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	105393489	C	T	105393489	4	4	303	1	0	0	0	0	0	1	0	0	4100	595	21	2	13	2	CXXC4	4	105393489	Nonsense_Mutation	SNP	C	TCGA-BP-4337-01A-01D-1366-10		105393489	85760787	14	19184											
SPOCK3	50859	hgsc.bcm.edu;ucsc.edu	37	4	167656201	167656201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	167656201	A	T	167656201	3	4	303	1	0	0	0	0	1	0	0	0	15093	98	4	5	132	5	SPOCK3	4	167656201	Missense_Mutation	SNP	A	TCGA-BP-4337-01A-01D-1366-10	62262712	167656201	23498075	15	19185											
MFAP3L	9848	hgsc.bcm.edu;ucsc.edu	37	4	170926995	170926995	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	170926995	A	T	170926995	3	4	303	1	0	0	0	0	1	0	0	0	9523	72	3	5	1203	5	MFAP3L	4	170926995	Missense_Mutation	SNP	A	TCGA-BP-4337-01A-01D-1366-10	3270794	170926995	20227281	16	19186											
APBB3	10307	hgsc.bcm.edu	37	5	139941190	139941190	+	Silent	SNP	T	T	C	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	C	139941190	T	C	139941190	2	2	303	1	0	0	0	0	0	0	0	1	762	1625	57	3		3	APBB3	5	139941190	Silent	SNP	T	TCGA-BP-4337-01A-01D-1366-10		139941190	40974070	17	19187											
DST	667	hgsc.bcm.edu;ucsc.edu	37	6	56341042	56341042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	G	56341042	A	G	56341042	3	3	303	1	0	0	0	0	1	0	0	0	4785	130	5	3	1663	3	DST	6	56341042	Missense_Mutation	SNP	A	TCGA-BP-4337-01A-01D-1366-10		56341042	114774025	18	19188											
KHDRBS2	202559	hgsc.bcm.edu	37	6	62604617	62604617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	62604617	G	T	62604617	3	4	303	1	0	0	0	0	1	0	0	0	8154	1232	43	4	332	4	KHDRBS2	6	62604617	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10	6263575	62604617	108510450	19	19189											
GRIK2	2898	hgsc.bcm.edu;ucsc.edu	37	6	102266315	102266315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	102266315	C	A	102266315	3	1	303	1	0	0	0	0	1	0	0	0	6781	478	17	4	1308	4	GRIK2	6	102266315	Missense_Mutation	SNP	C	TCGA-BP-4337-01A-01D-1366-10	39661698	102266315	68848752	20	19190											
PTCH1	5727	hgsc.bcm.edu	37	9	98231217	98231217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	98231217	G	T	98231217	3	4	303	1	0	0	0	0	1	0	0	0	12740	1232	43	4	2317	4	PTCH1	9	98231217	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10		98231217	42982214	21	19191											
KIAA0368	23392	hgsc.bcm.edu;ucsc.edu	37	9	114182377	114182377	+	Silent	SNP	C	C	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	G	114182377	C	G	114182377	2	3	303	1	0	0	0	0	0	0	0	1	8178	581	21	4		4	KIAA0368	9	114182377	Silent	SNP	C	TCGA-BP-4337-01A-01D-1366-10	15951160	114182377	27031054	22	19192											
C10orf99	387695	hgsc.bcm.edu	37	10	85944492	85944492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	85944492	G	T	85944492	3	4	303	1	0	0	0	0	1	0	0	0	1630	1241	43	4	226	4	C10orf99	10	85944492	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10		85944492	49590255	23	19193											
C10orf129	142827	hgsc.bcm.edu;ucsc.edu	37	10	96971678	96971678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	96971678	G	A	96971678	3	1	303	1	0	0	0	0	1	0	0	0	1595	1232	43	2	817	2	C10orf129	10	96971678	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10	11027186	96971678	38563069	24	19194											
ZDHHC5	25921	hgsc.bcm.edu;ucsc.edu	37	11	57440565	57440565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	57440565	G	T	57440565	3	4	303	1	0	0	0	0	1	0	0	0	17630	1319	46	4	5	4	ZDHHC5	11	57440565	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10		57440565	77565951	25	19195											
TMEM109	79073	hgsc.bcm.edu	37	11	60689310	60689310	+	Silent	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	60689310	A	T	60689310	2	4	303	1	0	0	0	0	0	0	0	1	16037	291	11	5		5	TMEM109	11	60689310	Silent	SNP	A	TCGA-BP-4337-01A-01D-1366-10	3248745	60689310	74317206	26	19196											
ARID4A	5926	hgsc.bcm.edu;ucsc.edu	37	14	58790270	58790270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	58790270	G	T	58790270	4	4	303	1	0	0	0	0	0	1	0	0	919	1291	45	4	543	4	ARID4A	14	58790270	Nonsense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10		58790270	48559270	27	19197											
HSPA2	3306	hgsc.bcm.edu	37	14	65008972	65008972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	G	65008972	C	G	65008972	3	3	303	1	0	0	0	0	1	0	0	0	7418	623	22	4	1407	4	HSPA2	14	65008972	Missense_Mutation	SNP	C	TCGA-BP-4337-01A-01D-1366-10	6218702	65008972	42340568	28	19198											
SERPINA11	256394	hgsc.bcm.edu;ucsc.edu	37	14	94914808	94914808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	94914808	C	A	94914808	3	1	303	1	0	0	0	0	1	0	0	0	14101	623	22	4	980	4	SERPINA11	14	94914808	Missense_Mutation	SNP	C	TCGA-BP-4337-01A-01D-1366-10	29905836	94914808	12434732	29	19199											
CNOT1	23019	hgsc.bcm.edu;ucsc.edu	37	16	58579383	58579385	+	In_Frame_Del	DEL	GTA	GTA	-	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	GTA	GTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	-	58579385	GTA	-	58579383	7	5	303	1	0	1	0	1	0	0	0	0	3619	1377	48	0	3413	0	CNOT1	16	58579383	In_Frame_Del	DEL	GTA	TCGA-BP-4337-01A-01D-1366-10		58579383	31775370	30	19200											
ACSF2	80221	hgsc.bcm.edu;ucsc.edu	37	17	48548424	48548424	+	Silent	SNP	A	A	G	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	G	48548424	A	G	48548424	2	3	303	1	0	0	0	0	0	0	0	1	175	204	8	3		3	ACSF2	17	48548424	Silent	SNP	A	TCGA-BP-4337-01A-01D-1366-10		48548424	32646786	31	19201											
WFIKKN2	124857	hgsc.bcm.edu;ucsc.edu	37	17	48917427	48917427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	48917427	G	T	48917427	3	4	303	1	0	0	0	0	1	0	0	0	17371	1377	48	4	784	4	WFIKKN2	17	48917427	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10	369003	48917427	32277783	32	19202											
ZNF836	162962	hgsc.bcm.edu;ucsc.edu	37	19	52659379	52659379	+	Silent	SNP	A	A	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	52659379	A	T	52659379	2	4	303	1	0	0	0	0	0	0	0	1	18199	242	9	5		5	ZNF836	19	52659379	Silent	SNP	A	TCGA-BP-4337-01A-01D-1366-10		52659379	6469604	33	19203											
STMN3	50861	hgsc.bcm.edu;ucsc.edu	37	20	62275589	62275589	+	Silent	SNP	G	G	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	62275589	G	A	62275589	2	1	303	1	0	0	0	0	0	0	0	1	15322	1335	47	2		2	STMN3	20	62275589	Silent	SNP	G	TCGA-BP-4337-01A-01D-1366-10		62275589	749931	34	19204											
COL6A1	1291	hgsc.bcm.edu;ucsc.edu	37	21	47420243	47420243	+	Splice_Site	SNP	A	A	C	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	C	47420243	A	C	47420243	5	2	303	1	0	0	0	0	0	0	1	0	3701	202	7	5	1885	5	COL6A1	21	47420243	Splice_Site	SNP	A	TCGA-BP-4337-01A-01D-1366-10		47420243	709652	35	19205											
KLHL22	84861	hgsc.bcm.edu	37	22	20843449	20843449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	20843449	G	T	20843449	3	4	303	1	0	0	0	0	1	0	0	0	8384	1232	43	4	1878	4	KLHL22	22	20843449	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10		20843449	30461117	36	19206											
KCTD17	79734	hgsc.bcm.edu	37	22	37455447	37455447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	T	37455447	G	T	37455447	3	4	303	1	0	0	0	0	1	0	0	0	8111	1232	43	4	620	4	KCTD17	22	37455447	Missense_Mutation	SNP	G	TCGA-BP-4337-01A-01D-1366-10	16611998	37455447	13849119	37	19207											
FAM46D	169966	hgsc.bcm.edu;ucsc.edu	37	X	79698230	79698230	+	Silent	SNP	T	T	C	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	C	79698230	T	C	79698230	2	2	303	1	0	0	0	0	0	0	0	1	5575	1461	51	3		3	FAM46D	23	79698230	Silent	SNP	T	TCGA-BP-4337-01A-01D-1366-10		79698230	75572330	38	19208											
AFF2	2334	hgsc.bcm.edu;ucsc.edu	37	X	148037494	148037494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4337-01A-01D-1366-10	TCGA-BP-4337-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ac8f948d-0bb3-4150-9a77-0ec972993a93	06efe36c-7a15-4074-abfe-c915db67fce6	A	148037494	C	A	148037494	3	1	303	1	0	0	0	0	1	0	0	0	357	565	20	4	2016	4	AFF2	23	148037494	Missense_Mutation	SNP	C	TCGA-BP-4337-01A-01D-1366-10	68339264	148037494	7233066	39	19209											
PRAMEF1	65121	hgsc.bcm.edu	37	1	12854414	12854414	+	Missense_Mutation	SNP	G	G	A	rs1063769	bycluster;byfrequency	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	12854414	G	A	12854414	3	1	304	1	0	0	0	0	1	0	0	0	12435	1087	38	1	644	1	PRAMEF1	1	12854414	Missense_Mutation	SNP	G	TCGA-BP-4338-01A-01D-1806-10		12854414	236396207	1	19210											
PRAMEF7	441871	hgsc.bcm.edu	37	1	12977626	12977626	+	Silent	SNP	A	A	G	rs61778319	bycluster;byfrequency	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	12977626	A	G	12977626	2	3	304	1	0	0	0	0	0	0	0	1	12449	146	6	3		3	PRAMEF7	1	12977626	Silent	SNP	A	TCGA-BP-4338-01A-01D-1806-10	123212	12977626	236272995	2	19211											
PRAMEF7	441871	hgsc.bcm.edu	37	1	12977766	12977766	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	12977766	T	G	12977766	3	3	304	1	0	0	0	0	1	0	0	0	12449	1725	60	5	256	5	PRAMEF7	1	12977766	Missense_Mutation	SNP	T	TCGA-BP-4338-01A-01D-1806-10	140	12977766	236272855	3	19212											
DMRTB1	63948	hgsc.bcm.edu	37	1	53927263	53927263	+	Missense_Mutation	SNP	C	G	G	rs146520630	alternate_allele	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	53927263	G	G	53927263	3	3	304	1	0	0	0	0	1	0	0	0	4592	623	22	4	701	4	DMRTB1	1	53927263	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10	40949497	53927263	195323358	4	19213											
NOTCH2	4853	hgsc.bcm.edu	37	1	120548025	120548025	+	Silent	SNP	G	G	A	rs2604045	bycluster	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	120548025	G	A	120548025	2	1	304	1	0	0	0	0	0	0	0	1	10555	987	35	2		2	NOTCH2	1	120548025	Silent	SNP	G	TCGA-BP-4338-01A-01D-1806-10	66620762	120548025	128702596	5	19214											
TLR5	7100	hgsc.bcm.edu;ucsc.edu	37	1	223284112	223284112	+	Silent	SNP	G	G	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	223284112	G	T	223284112	2	4	304	1	0	0	0	0	0	0	0	1	15966	1048	37	4		4	TLR5	1	223284112	Silent	SNP	G	TCGA-BP-4338-01A-01D-1806-10	102736087	223284112	25966509	6	19215											
PRSS38	339501	hgsc.bcm.edu;ucsc.edu	37	1	228033865	228033866	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	228033866	-	T	228033865	7	5	304	1	0	1	1	0	0	0	0	0	12637	913	32	0	955	0	PRSS38	1	228033865	Frame_Shift_Ins	INS	-	TCGA-BP-4338-01A-01D-1806-10	4749753	228033865	21216756	7	19216											
NLRP3	114548	hgsc.bcm.edu	37	1	247587937	247587937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	247587937	C	G	247587937	3	3	304	1	0	0	0	0	1	0	0	0	10485	912	32	4	1202	4	NLRP3	1	247587937	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10	19554072	247587937	1662684	8	19217											
SLC8A1	6546	hgsc.bcm.edu	37	2	40392062	40392062	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	-	40392062	T	-	40392062	7	5	304	1	0	1	0	1	0	0	0	0	14719	1493	52	0	836	0	SLC8A1	2	40392062	Frame_Shift_Del	DEL	T	TCGA-BP-4338-01A-01D-1806-10		40392062	202807311	9	19218											
APLF	200558	hgsc.bcm.edu;ucsc.edu	37	2	68772385	68772385	+	Silent	SNP	C	C	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	68772385	C	T	68772385	2	4	304	1	0	0	0	0	0	0	0	1	776	874	31	1		1	APLF	2	68772385	Silent	SNP	C	TCGA-BP-4338-01A-01D-1806-10	28380323	68772385	174426988	10	19219											
RGPD5	84220	hgsc.bcm.edu	37	2	110585652	110585652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	110585652	A	G	110585652	3	3	304	1	0	0	0	0	1	0	0	0	13302	246	9	3	2459	3	RGPD5	2	110585652	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10	41813267	110585652	132613721	11	19220											
SAP130	79595	hgsc.bcm.edu	37	2	128744480	128744480	+	Missense_Mutation	SNP	T	T	C	rs72841716	bycluster;byfrequency;by1000genomes	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	C	128744480	T	C	128744480	3	2	304	1	0	0	0	0	1	0	0	0	13844	1580	55	3	1368	3	SAP130	2	128744480	Missense_Mutation	SNP	T	TCGA-BP-4338-01A-01D-1806-10	18158828	128744480	114454893	12	19221											
PLEKHB2	55041	hgsc.bcm.edu;ucsc.edu	37	2	131883458	131883458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	131883458	G	A	131883458	3	1	304	1	0	0	0	0	1	0	0	0	12072	1087	38	1	176	1	PLEKHB2	2	131883458	Missense_Mutation	SNP	G	TCGA-BP-4338-01A-01D-1806-10	3138978	131883458	111315915	13	19222											
TTN	7273	hgsc.bcm.edu	37	2	179407913	179407913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	179407913	T	G	179407913	3	3	304	1	0	0	0	0	1	0	0	0	16747	1696	59	5	11256	5	TTN	2	179407913	Missense_Mutation	SNP	T	TCGA-BP-4338-01A-01D-1806-10	47524455	179407913	63791460	14	19223											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179614382	179614382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	179614382	C	T	179614382	3	4	304	1	0	0	0	0	1	0	0	0	16747	864	30	2	97552	2	TTN	2	179614382	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10	206469	179614382	63584991	15	19224											
PLCD4	84812	hgsc.bcm.edu;ucsc.edu	37	2	219501273	219501273	+	Silent	SNP	G	G	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	219501273	G	A	219501273	2	1	304	1	0	0	0	0	0	0	0	1	12040	991	35	2		2	PLCD4	2	219501273	Silent	SNP	G	TCGA-BP-4338-01A-01D-1806-10	39886891	219501273	23698100	16	19225											
SP140	11262	hgsc.bcm.edu;ucsc.edu	37	2	231102997	231102997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	231102997	G	A	231102997	3	1	304	1	0	0	0	0	1	0	0	0	14975	1175	41	2	317	2	SP140	2	231102997	Missense_Mutation	SNP	G	TCGA-BP-4338-01A-01D-1806-10	11601724	231102997	12096376	17	19226											
MST1	4485	hgsc.bcm.edu	37	3	49721998	49721998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	49721998	A	G	49721998	3	3	304	1	0	0	0	0	1	0	0	0	9897	188	7	3	328	3	MST1	3	49721998	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10		49721998	148300432	18	19227											
B4GALT4	8702	hgsc.bcm.edu	37	3	118931440	118931440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	118931440	G	A	118931440	3	1	304	1	0	0	0	0	1	0	0	0	1273	1174	41	2	47	2	B4GALT4	3	118931440	Missense_Mutation	SNP	G	TCGA-BP-4338-01A-01D-1806-10	69209442	118931440	79090990	19	19228											
TFDP2	7029	hgsc.bcm.edu;ucsc.edu	37	3	141678681	141678681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	141678681	A	G	141678681	3	3	304	1	0	0	0	0	1	0	0	0	15810	57	2	3	466	3	TFDP2	3	141678681	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10	22747241	141678681	56343749	20	19229											
ATP11B	23200	hgsc.bcm.edu	37	3	182584081	182584081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	182584081	A	G	182584081	3	3	304	1	0	0	0	0	1	0	0	0	1120	14	1	3	1523	3	ATP11B	3	182584081	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10	40905400	182584081	15438349	21	19230											
MUC4	4585	hgsc.bcm.edu	37	3	195510766	195510766	+	Missense_Mutation	SNP	G	G	T	rs79949955	byfrequency	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	195510766	G	T	195510766	3	4	304	1	0	0	0	0	1	0	0	0	9985	1000	35	4		4	MUC4	3	195510766	Missense_Mutation	SNP	G	TCGA-BP-4338-01A-01D-1806-10	12926685	195510766	2511664	22	19231											
CLGN	1047	hgsc.bcm.edu	37	4	141321658	141321658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	141321658	C	G	141321658	3	3	304	1	0	0	0	0	1	0	0	0	3526	913	32	4	1321	4	CLGN	4	141321658	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10		141321658	49832618	23	19232											
DNAJC21	134218	hgsc.bcm.edu;ucsc.edu	37	5	34937560	34937560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	34937560	A	G	34937560	3	3	304	1	0	0	0	0	1	0	0	0	4642	15	1	3	586	3	DNAJC21	5	34937560	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10		34937560	145977700	24	19233											
GTF2H2	2966	hgsc.bcm.edu	37	5	70351196	70351196	+	Missense_Mutation	SNP	T	T	C	rs2576895	byfrequency	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	C	70351196	T	C	70351196	3	2	304	1	0	0	0	0	1	0	0	0	6868	1512	53	3	770	3	GTF2H2	5	70351196	Missense_Mutation	SNP	T	TCGA-BP-4338-01A-01D-1806-10	35413636	70351196	110564064	25	19234											
SLC17A1	6568	hgsc.bcm.edu	37	6	25801166	25801166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	25801166	C	A	25801166	3	1	304	1	0	0	0	0	1	0	0	0	14429	826	29	4	190	4	SLC17A1	6	25801166	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10		25801166	145313901	26	19235											
BRPF3	27154	hgsc.bcm.edu	37	6	36175215	36175215	+	Silent	SNP	A	A	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	36175215	A	T	36175215	2	4	304	1	0	0	0	0	0	0	0	1	1523	291	11	5		5	BRPF3	6	36175215	Silent	SNP	A	TCGA-BP-4338-01A-01D-1806-10	10374049	36175215	134939852	27	19236											
TSPYL1	7259	hgsc.bcm.edu;ucsc.edu	37	6	116600312	116600312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	116600312	G	T	116600312	3	4	304	1	0	0	0	0	1	0	0	0	16671	1116	39	4	635	4	TSPYL1	6	116600312	Missense_Mutation	SNP	G	TCGA-BP-4338-01A-01D-1806-10	80425097	116600312	54514755	28	19237											
RAET1L	154064	hgsc.bcm.edu	37	6	150343148	150343148	+	Missense_Mutation	SNP	A	A	C	rs78563624		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	C	150343148	A	C	150343148	3	2	304	1	0	0	0	0	1	0	0	0	13014	72	3	5	434	5	RAET1L	6	150343148	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10	33742836	150343148	20771919	29	19238											
MCPH1	79648	hgsc.bcm.edu	37	8	6302121	6302122	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	-	6302122	GT	-	6302121	7	5	304	1	0	1	0	1	0	0	0	0	9405	1029	36	0	908	0	MCPH1	8	6302121	Frame_Shift_Del	DEL	GT	TCGA-BP-4338-01A-01D-1806-10		6302121	140061901	30	19239											
MTUS1	57509	hgsc.bcm.edu;ucsc.edu	37	8	17581247	17581247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	17581247	G	A	17581247	3	1	304	1	0	0	0	0	1	0	0	0	9972	1086	38	1	1796	1	MTUS1	8	17581247	Missense_Mutation	SNP	G	TCGA-BP-4338-01A-01D-1806-10	11279126	17581247	128782775	31	19240											
VPS13B	157680	hgsc.bcm.edu;ucsc.edu	37	8	100871685	100871685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	100871685	C	A	100871685	4	1	304	1	0	0	0	0	0	1	0	0	17202	893	31	4	11512	4	VPS13B	8	100871685	Nonsense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10	83290438	100871685	45492337	32	19241											
ZFAT	57623	hgsc.bcm.edu	37	8	135621044	135621044	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	135621044	A	T	135621044	3	4	304	1	0	0	0	0	1	0	0	0	17644	188	7	5	3066	5	ZFAT	8	135621044	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10	34749359	135621044	10742978	33	19242											
C8orf31	286122	hgsc.bcm.edu;ucsc.edu	37	8	144124450	144124450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	144124450	A	G	144124450	3	3	304	1	0	0	0	0	1	0	0	0	2422	101	4	3	34	3	C8orf31	8	144124450	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10	8503406	144124450	2239572	34	19243											
HAUS6	54801	hgsc.bcm.edu;ucsc.edu	37	9	19058758	19058759	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	-	19058759	AT	-	19058758	7	5	304	1	0	1	0	1	0	0	0	0	6977	214	8	0	868	0	HAUS6	9	19058758	Frame_Shift_Del	DEL	AT	TCGA-BP-4338-01A-01D-1806-10		19058758	122154673	35	19244											
SDCCAG3	10807	hgsc.bcm.edu	37	9	139297266	139297266	+	Missense_Mutation	SNP	C	C	T	rs17855450	bycluster;by1000genomes	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	139297266	C	T	139297266	3	4	304	1	0	0	0	0	1	0	0	0	13971	565	20	2	29	2	SDCCAG3	9	139297266	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10	120238508	139297266	1916165	36	19245											
DHTKD1	55526	hgsc.bcm.edu	37	10	12139743	12139743	+	Silent	SNP	G	G	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	12139743	G	A	12139743	2	1	304	1	0	0	0	0	0	0	0	1	4502	1074	38	1		1	DHTKD1	10	12139743	Silent	SNP	G	TCGA-BP-4338-01A-01D-1806-10		12139743	123395004	37	19246											
MICAL2	9645	hgsc.bcm.edu	37	11	12246315	12246315	+	Missense_Mutation	SNP	C	C	T	rs190895714	by1000genomes	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	12246315	C	T	12246315	3	4	304	1	0	0	0	0	1	0	0	0	9577	768	27	1	1678	1	MICAL2	11	12246315	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10		12246315	122760201	38	19247											
LDHA	3939	hgsc.bcm.edu	37	11	18424451	18424451	+	Silent	SNP	C	C	T	rs5030621	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	18424451	C	T	18424451	2	4	304	1	0	0	0	0	0	0	0	1	8705	767	27	1		1	LDHA	11	18424451	Silent	SNP	C	TCGA-BP-4338-01A-01D-1806-10	6178136	18424451	116582065	39	19248											
MRGPRX2	117194	hgsc.bcm.edu;ucsc.edu	37	11	19077607	19077607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	19077607	C	T	19077607	3	4	304	1	0	0	0	0	1	0	0	0	9774	710	25	2	653	2	MRGPRX2	11	19077607	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10	653156	19077607	115928909	40	19249											
ZNF641	121274	hgsc.bcm.edu;ucsc.edu	37	12	48739161	48739161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	48739161	T	A	48739161	3	1	304	1	0	0	0	0	1	0	0	0	18069	1464	51	5	913	5	ZNF641	12	48739161	Missense_Mutation	SNP	T	TCGA-BP-4338-01A-01D-1806-10		48739161	85112734	41	19250			1	38		2	2	19	N	T_A	3.604965e-05
ZNF641	121274	hgsc.bcm.edu;ucsc.edu	37	12	48739179	48739179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	48739179	A	T	48739179	3	4	304	1	0	0	0	0	1	0	0	0	18069	72	3	5	931	5	ZNF641	12	48739179	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10	18	48739179	85112716	42	19251			1	38		2	2	19	N	T_A	3.604965e-05
RNF17	56163	hgsc.bcm.edu;ucsc.edu	37	13	25419107	25419107	+	Silent	SNP	G	G	C	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	C	25419107	G	C	25419107	2	2	304	1	0	0	0	0	0	0	0	1	13474	1364	48	4		4	RNF17	13	25419107	Silent	SNP	G	TCGA-BP-4338-01A-01D-1806-10		25419107	89750771	43	19252											
POTEG	404785	hgsc.bcm.edu	37	14	19574243	19574243	+	Missense_Mutation	SNP	C	C	A	rs2818572	bycluster;by2hit2allele	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	19574243	C	A	19574243	3	1	304	1	0	0	0	0	1	0	0	0	12273	739	26	4	1334	4	POTEG	14	19574243	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10		19574243	87775297	44	19253											
CHRFAM7A	89832	hgsc.bcm.edu	37	15	30664489	30664489	+	Silent	SNP	A	A	G	rs386715	bycluster;byfrequency	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	30664489	A	G	30664489	2	3	304	1	0	0	0	0	0	0	0	1	3377	175	7	3		3	CHRFAM7A	15	30664489	Silent	SNP	A	TCGA-BP-4338-01A-01D-1806-10		30664489	71866903	45	19254											
DNAH3	55567	hgsc.bcm.edu;ucsc.edu	37	16	20975125	20975125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	20975125	C	T	20975125	3	4	304	1	0	0	0	0	1	0	0	0	4605	536	19	1	2308	1	DNAH3	16	20975125	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10		20975125	69379628	46	19255											
TK2	7084	hgsc.bcm.edu;ucsc.edu	37	16	66582905	66582905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	66582905	T	A	66582905	3	1	304	1	0	0	0	0	1	0	0	0	15945	1722	60	5	701	5	TK2	16	66582905	Missense_Mutation	SNP	T	TCGA-BP-4338-01A-01D-1806-10	45607780	66582905	23771848	47	19256											
ZNF19	7567	hgsc.bcm.edu;ucsc.edu	37	16	71512809	71512809	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	71512809	C	A	71512809	4	1	304	1	0	0	0	0	0	1	0	0	17767	864	30	4	1255	4	ZNF19	16	71512809	Nonsense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10	4929904	71512809	18841944	48	19257											
ZNF286A	57335	hgsc.bcm.edu;ucsc.edu	37	17	15620445	15620445	+	Silent	SNP	C	C	T	rs2530065		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	15620445	C	T	15620445	2	4	304	1	0	0	0	0	0	0	0	1	17835	767	27	1		1	ZNF286A	17	15620445	Silent	SNP	C	TCGA-BP-4338-01A-01D-1806-10		15620445	65574765	49	19258											
CCDC144B	284047	hgsc.bcm.edu;ucsc.edu	37	17	18486814	18486815	+	Frame_Shift_Ins	INS	-	-	T	rs71208410		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	18486815	-	T	18486814	7	5	304	1	0	1	1	0	0	0	0	0	2780	623	22	0	52	0	CCDC144B	17	18486814	Frame_Shift_Ins	INS	-	TCGA-BP-4338-01A-01D-1806-10	2866369	18486814	62708396	50	19259											
LRRC37B	114659	hgsc.bcm.edu;ucsc.edu	37	17	30358422	30358422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	30358422	A	G	30358422	3	3	304	1	0	0	0	0	1	0	0	0	9001	15	1	3	1939	3	LRRC37B	17	30358422	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10	11871608	30358422	50836788	51	19260											
NPEPPS	9520	hgsc.bcm.edu;ucsc.edu	37	17	45656826	45656826	+	Silent	SNP	A	A	G	rs2661174	bycluster;by2hit2allele	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	45656826	A	G	45656826	2	3	304	1	0	0	0	0	0	0	0	1	10582	98	4	3		3	NPEPPS	17	45656826	Silent	SNP	A	TCGA-BP-4338-01A-01D-1806-10	15298404	45656826	35538384	52	19261											
MTMR4	9110	hgsc.bcm.edu;ucsc.edu	37	17	56572562	56572562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	C	56572562	T	C	56572562	3	2	304	1	0	0	0	0	1	0	0	0	9953	1435	50	3	662	3	MTMR4	17	56572562	Missense_Mutation	SNP	T	TCGA-BP-4338-01A-01D-1806-10	10915736	56572562	24622648	53	19262											
CCDC47	57003	hgsc.bcm.edu	37	17	61838603	61838603	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	61838603	A	T	61838603	3	4	304	1	0	0	0	0	1	0	0	0	2820	72	3	5	831	5	CCDC47	17	61838603	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10	5266041	61838603	19356607	54	19263											
ANKRD30B	374860	hgsc.bcm.edu	37	18	14851929	14851929	+	Missense_Mutation	SNP	C	C	A	rs2792527	bycluster;by2hit2allele	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	14851929	C	A	14851929	3	1	304	1	0	0	0	0	1	0	0	0	659	681	24	4	3771	4	ANKRD30B	18	14851929	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10		14851929	63225319	55	19264											
PLIN4	729359	hgsc.bcm.edu	37	19	4510615	4510615	+	Silent	SNP	G	G	A	rs140509702	by1000genomes	TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	4510615	G	A	4510615	2	1	304	1	0	0	0	0	0	0	0	1	12099	1136	40	1		1	PLIN4	19	4510615	Silent	SNP	G	TCGA-BP-4338-01A-01D-1806-10		4510615	54618368	56	19265											
TNFSF9	8744	hgsc.bcm.edu;ucsc.edu	37	19	6534712	6534712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	6534712	G	A	6534712	3	1	304	1	0	0	0	0	1	0	0	0	16324	1261	44	2	410	2	TNFSF9	19	6534712	Missense_Mutation	SNP	G	TCGA-BP-4338-01A-01D-1806-10	2024097	6534712	52594271	57	19266											
CYP4F11	57834	hgsc.bcm.edu;ucsc.edu	37	19	16038275	16038275	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	16038275	T	A	16038275	3	1	304	1	0	0	0	0	1	0	0	0	4188	1435	50	5	1252	5	CYP4F11	19	16038275	Missense_Mutation	SNP	T	TCGA-BP-4338-01A-01D-1806-10	9503563	16038275	43090708	58	19267											
MYT1	4661	hgsc.bcm.edu	37	20	62863561	62863561	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	T	62863561	A	T	62863561	3	4	304	1	0	0	0	0	1	0	0	0	10113	14	1	5	2786	5	MYT1	20	62863561	Missense_Mutation	SNP	A	TCGA-BP-4338-01A-01D-1806-10		62863561	161959	59	19268											
ZNF295	0	hgsc.bcm.edu	37	21	43412479	43412479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	G	43412479	C	G	43412479	3	3	304	1	0	0	0	0	1	0	0	0	17839	768	27	4	1478	4	ZNF295	21	43412479	Missense_Mutation	SNP	C	TCGA-BP-4338-01A-01D-1806-10		43412479	4717416	60	19269											
CELSR1	9620	hgsc.bcm.edu;ucsc.edu	37	22	46793633	46793633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	A	46793633	G	A	46793633	3	1	304	1	0	0	0	0	1	0	0	0	3223	1232	43	2	3501	2	CELSR1	22	46793633	Missense_Mutation	SNP	G	TCGA-BP-4338-01A-01D-1806-10		46793633	4510933	61	19270											
SPANXD	64648	hgsc.bcm.edu	37	X	140785696	140785696	+	Missense_Mutation	SNP	T	T	C	rs2983592		TCGA-BP-4338-01A-01D-1806-10	TCGA-BP-4338-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	88266e1d-89b9-41e6-b662-08d144ab0f46	74c2011d-6135-4074-a0de-fedf3b6caa64	C	140785696	T	C	140785696	3	2	304	1	0	0	0	0	1	0	0	0	15001	1850	64	3	77	3	SPANXD	23	140785696	Missense_Mutation	SNP	T	TCGA-BP-4338-01A-01D-1806-10		140785696	14484864	62	19271											
CYP4A22	284541	hgsc.bcm.edu	37	1	47610310	47610310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	47610310	G	T	47610310	3	4	305	1	0	0	0	0	1	0	0	0	4186	1232	43	4	1016	4	CYP4A22	1	47610310	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10		47610310	201640311	1	19272											
USP24	23358	hgsc.bcm.edu;ucsc.edu	37	1	55547097	55547097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	C	55547097	T	C	55547097	3	2	305	1	0	0	0	0	1	0	0	0	17067	1449	50	3	926	3	USP24	1	55547097	Missense_Mutation	SNP	T	TCGA-BP-4340-01A-01D-1366-10	7936787	55547097	193703524	2	19273											
SARS	6301	hgsc.bcm.edu;ucsc.edu	37	1	109771043	109771043	+	Missense_Mutation	SNP	G	G	A	rs145938975		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	109771043	G	A	109771043	3	1	305	1	0	0	0	0	1	0	0	0	13857	942	33	2	287	2	SARS	1	109771043	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10	54223946	109771043	139479578	3	19274											
TXNIP	10628	hgsc.bcm.edu;ucsc.edu	37	1	145440062	145440064	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	AAG	AAG	AAG	-	AAG	AAG	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	-	145440064	AAG	-	145440062	7	5	305	1	0	1	0	1	0	0	0	0	16815	15	1	0	510	0	TXNIP	1	145440062	In_Frame_Del	DEL	AAG	TCGA-BP-4340-01A-01D-1366-10	35669019	145440062	103810559	4	19275											
NBAS	51594	hgsc.bcm.edu;ucsc.edu	37	2	15468417	15468417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	15468417	G	A	15468417	3	1	305	1	0	0	0	0	1	0	0	0	10193	1319	46	2	2812	2	NBAS	2	15468417	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10		15468417	227730956	5	19276											
TSPYL6	388951	hgsc.bcm.edu	37	2	54483083	54483083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	54483083	T	A	54483083	3	1	305	1	0	0	0	0	1	0	0	0	16675	1464	51	5	1030	5	TSPYL6	2	54483083	Missense_Mutation	SNP	T	TCGA-BP-4340-01A-01D-1366-10	39014666	54483083	188716290	6	19277											
USP37	57695	hgsc.bcm.edu	37	2	219330750	219330750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	219330750	G	T	219330750	3	4	305	1	0	0	0	0	1	0	0	0	17080	1299	45	4	514	4	USP37	2	219330750	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10	164847667	219330750	23868623	7	19278											
AGFG1	3267	hgsc.bcm.edu	37	2	228395821	228395821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	G	228395821	A	G	228395821	3	3	305	1	0	0	0	0	1	0	0	0	380	14	1	3	731	3	AGFG1	2	228395821	Missense_Mutation	SNP	A	TCGA-BP-4340-01A-01D-1366-10	9065071	228395821	14803552	8	19279											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47059128	47059128	+	Silent	SNP	C	C	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	47059128	C	T	47059128	2	4	305	1	0	0	0	0	0	0	0	1	14144	695	24	2		2	SETD2	3	47059128	Silent	SNP	C	TCGA-BP-4340-01A-01D-1366-10		47059128	150963302	9	19280											
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52436689	52436689	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	52436689	A	T	52436689	3	4	305	1	0	0	0	0	1	0	0	0	1311	115	4	5	212	5	BAP1	3	52436689	Missense_Mutation	SNP	A	TCGA-BP-4340-01A-01D-1366-10	5377561	52436689	145585741	10	19281											
ATG3	64422	hgsc.bcm.edu	37	3	112269053	112269053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	G	112269053	A	G	112269053	3	3	305	1	0	0	0	0	1	0	0	0	1095	131	5	3	759	3	ATG3	3	112269053	Missense_Mutation	SNP	A	TCGA-BP-4340-01A-01D-1366-10	59832364	112269053	85753377	11	19282											
IQCB1	9657	hgsc.bcm.edu;ucsc.edu	37	3	121545007	121545007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	121545007	T	A	121545007	3	1	305	1	0	0	0	0	1	0	0	0	7810	1551	54	5	1556	5	IQCB1	3	121545007	Missense_Mutation	SNP	T	TCGA-BP-4340-01A-01D-1366-10	9275954	121545007	76477423	12	19283											
RSRC1	51319	hgsc.bcm.edu;ucsc.edu	37	3	158261178	158261178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	158261178	G	A	158261178	3	1	305	1	0	0	0	0	1	0	0	0	13727	971	34	2	844	2	RSRC1	3	158261178	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10	36716171	158261178	39761252	13	19284											
NAA11	84779	hgsc.bcm.edu;ucsc.edu	37	4	80246576	80246576	+	Silent	SNP	C	C	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	80246576	C	A	80246576	2	1	305	1	0	0	0	0	0	0	0	1	10124	755	27	4		4	NAA11	4	80246576	Silent	SNP	C	TCGA-BP-4340-01A-01D-1366-10		80246576	110907700	14	19285											
WDFY3	23001	hgsc.bcm.edu;ucsc.edu	37	4	85748120	85748120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	C	85748120	T	C	85748120	3	2	305	1	0	0	0	0	1	0	0	0	17282	1841	64	3	9888	3	WDFY3	4	85748120	Missense_Mutation	SNP	T	TCGA-BP-4340-01A-01D-1366-10	5501544	85748120	105406156	15	19286											
FAM105A	54491	hgsc.bcm.edu;ucsc.edu	37	5	14608927	14608927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	14608927	C	T	14608927	3	4	305	1	0	0	0	0	1	0	0	0	5391	739	26	2	724	2	FAM105A	5	14608927	Missense_Mutation	SNP	C	TCGA-BP-4340-01A-01D-1366-10		14608927	166306333	16	19287											
AP3B1	8546	hgsc.bcm.edu;ucsc.edu	37	5	77523970	77523970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	C	77523970	T	C	77523970	3	2	305	1	0	0	0	0	1	0	0	0	744	1792	62	3	3007	3	AP3B1	5	77523970	Missense_Mutation	SNP	T	TCGA-BP-4340-01A-01D-1366-10	62915043	77523970	103391290	17	19288											
GUCA1B	2979	hgsc.bcm.edu;ucsc.edu	37	6	42156333	42156333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	G	42156333	A	G	42156333	3	3	305	1	0	0	0	0	1	0	0	0	6896	304	11	3	270	3	GUCA1B	6	42156333	Missense_Mutation	SNP	A	TCGA-BP-4340-01A-01D-1366-10		42156333	128958734	18	19289											
PCLO	27445	hgsc.bcm.edu;ucsc.edu	37	7	82595120	82595120	+	Silent	SNP	T	T	C	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	C	82595120	T	C	82595120	2	2	305	1	0	0	0	0	0	0	0	1	11590	1722	60	3		3	PCLO	7	82595120	Silent	SNP	T	TCGA-BP-4340-01A-01D-1366-10		82595120	76543543	19	19290											
SDCBP	6386	hgsc.bcm.edu	37	8	59490730	59490730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	59490730	G	A	59490730	3	1	305	1	0	0	0	0	1	0	0	0	13968	1203	42	2	559	2	SDCBP	8	59490730	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10		59490730	86873292	20	19291											
GML	2765	hgsc.bcm.edu;ucsc.edu	37	8	143927977	143927977	+	Silent	SNP	T	T	G	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	G	143927977	T	G	143927977	2	3	305	1	0	0	0	0	0	0	0	1	6499	1509	53	5		5	GML	8	143927977	Silent	SNP	T	TCGA-BP-4340-01A-01D-1366-10	84437247	143927977	2436045	21	19292											
HNRNPK	3190	hgsc.bcm.edu	37	9	86585175	86585175	+	Silent	SNP	G	G	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	86585175	G	T	86585175	2	4	305	1	0	0	0	0	0	0	0	1	7276	1280	45	4		4	HNRNPK	9	86585175	Silent	SNP	G	TCGA-BP-4340-01A-01D-1366-10		86585175	54628256	22	19293											
SLC16A9	220963	hgsc.bcm.edu;ucsc.edu	37	10	61443944	61443944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	61443944	G	T	61443944	3	4	305	1	0	0	0	0	1	0	0	0	14428	991	35	4	1443	4	SLC16A9	10	61443944	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10		61443944	74090803	23	19294											
IKZF5	64376	hgsc.bcm.edu;ucsc.edu	37	10	124753309	124753309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	C	124753309	T	C	124753309	3	2	305	1	0	0	0	0	1	0	0	0	7625	1464	51	3	16	3	IKZF5	10	124753309	Missense_Mutation	SNP	T	TCGA-BP-4340-01A-01D-1366-10	63309365	124753309	10781438	24	19295											
TRPM5	29850	hgsc.bcm.edu;ucsc.edu	37	11	2439023	2439023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	2439023	C	A	2439023	3	1	305	1	0	0	0	0	1	0	0	0	16601	536	19	4	2626	4	TRPM5	11	2439023	Missense_Mutation	SNP	C	TCGA-BP-4340-01A-01D-1366-10		2439023	132567493	25	19296											
DNHD1	144132	hgsc.bcm.edu	37	11	6568627	6568627	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	C	6568627	G	C	6568627	3	2	305	1	0	0	0	0	1	0	0	0	4670	1357	47	4	6541	4	DNHD1	11	6568627	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10	4129604	6568627	128437889	26	19297											
DNHD1	144132	hgsc.bcm.edu	37	11	6579324	6579326	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	-	6579326	TGC	-	6579324	7	5	305	1	0	1	0	1	0	0	0	0	4670	1461	51	0	8898	0	DNHD1	11	6579324	In_Frame_Del	DEL	TGC	TCGA-BP-4340-01A-01D-1366-10	10697	6579324	128427192	27	19298											
SLC5A12	159963	hgsc.bcm.edu;ucsc.edu	37	11	26720047	26720047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	G	26720047	A	G	26720047	3	3	305	1	0	0	0	0	1	0	0	0	14677	101	4	3	1035	3	SLC5A12	11	26720047	Missense_Mutation	SNP	A	TCGA-BP-4340-01A-01D-1366-10	20140723	26720047	108286469	28	19299											
PGM2L1	283209	hgsc.bcm.edu	37	11	74081946	74081946	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	74081946	C	T	74081946	5	4	305	1	0	0	0	0	0	0	1	0	11806	579	20	2	1440	2	PGM2L1	11	74081946	Splice_Site	SNP	C	TCGA-BP-4340-01A-01D-1366-10	47361899	74081946	60924570	29	19300											
ARID2	196528	hgsc.bcm.edu;ucsc.edu	37	12	46230650	46230650	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	46230650	A	T	46230650	3	4	305	1	0	0	0	0	1	0	0	0	915	304	11	5	929	5	ARID2	12	46230650	Missense_Mutation	SNP	A	TCGA-BP-4340-01A-01D-1366-10		46230650	87621245	30	19301											
LIMA1	51474	hgsc.bcm.edu	37	12	50615812	50615812	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	50615812	G	A	50615812	4	1	305	1	0	0	0	0	0	1	0	0	8803	1299	45	2	1692	2	LIMA1	12	50615812	Nonsense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10	4385162	50615812	83236083	31	19302											
PCBP2	5094	hgsc.bcm.edu;ucsc.edu	37	12	53848638	53848638	+	Silent	SNP	A	A	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	53848638	A	T	53848638	2	4	305	1	0	0	0	0	0	0	0	1	11508	378	14	5		5	PCBP2	12	53848638	Silent	SNP	A	TCGA-BP-4340-01A-01D-1366-10	3232826	53848638	80003257	32	19303											
RIMBP2	23504	hgsc.bcm.edu;ucsc.edu	37	12	130897262	130897262	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	G	130897262	C	G	130897262	3	3	305	1	0	0	0	0	1	0	0	0	13376	478	17	4	455	4	RIMBP2	12	130897262	Missense_Mutation	SNP	C	TCGA-BP-4340-01A-01D-1366-10	77048624	130897262	2954633	33	19304											
SPTB	6710	hgsc.bcm.edu	37	14	65237810	65237810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	65237810	G	A	65237810	3	1	305	1	0	0	0	0	1	0	0	0	15130	1377	48	2	1504	2	SPTB	14	65237810	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10		65237810	42111730	34	19305											
C15orf2	0	hgsc.bcm.edu	37	15	24922520	24922520	+	Silent	SNP	C	C	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	24922520	C	T	24922520	2	4	305	1	0	0	0	0	0	0	0	1	1786	796	28	2		2	C15orf2	15	24922520	Silent	SNP	C	TCGA-BP-4340-01A-01D-1366-10		24922520	77608872	35	19306											
CCNDBP1	23582	hgsc.bcm.edu;ucsc.edu	37	15	43482567	43482567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	43482567	C	T	43482567	3	4	305	1	0	0	0	0	1	0	0	0	2921	768	27	1	495	1	CCNDBP1	15	43482567	Missense_Mutation	SNP	C	TCGA-BP-4340-01A-01D-1366-10	18560047	43482567	59048825	36	19307											
ANPEP	290	hgsc.bcm.edu;ucsc.edu	37	15	90348362	90348362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	G	90348362	A	G	90348362	3	3	305	1	0	0	0	0	1	0	0	0	710	72	3	3	2131	3	ANPEP	15	90348362	Missense_Mutation	SNP	A	TCGA-BP-4340-01A-01D-1366-10	46865795	90348362	12183030	37	19308											
PRDM7	11105	hgsc.bcm.edu;ucsc.edu	37	16	90127868	90127868	+	Missense_Mutation	SNP	G	G	T	rs139778453	alternate_allele	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	90127868	G	T	90127868	3	4	305	1	0	0	0	0	1	0	0	0	12471	1020	36	4	548	4	PRDM7	16	90127868	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10		90127868	226885	38	19309											
CHD3	1107	hgsc.bcm.edu;ucsc.edu	37	17	7797795	7797795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	7797795	G	A	7797795	3	1	305	1	0	0	0	0	1	0	0	0	3328	1174	41	2	1449	2	CHD3	17	7797795	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10		7797795	73397415	39	19310											
PIGS	94005	hgsc.bcm.edu	37	17	26888452	26888452	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	G	26888452	T	G	26888452	3	3	305	1	0	0	0	0	1	0	0	0	11905	1821	63	5	1031	5	PIGS	17	26888452	Missense_Mutation	SNP	T	TCGA-BP-4340-01A-01D-1366-10	19090657	26888452	54306758	40	19311											
SCN4A	6329	hgsc.bcm.edu;ucsc.edu	37	17	62018757	62018757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	62018757	G	A	62018757	3	1	305	1	0	0	0	0	1	0	0	0	13933	1232	43	2	629	2	SCN4A	17	62018757	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10	35130305	62018757	19176453	41	19312											
TBCD	6904	hgsc.bcm.edu;ucsc.edu	37	17	80887147	80887147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	80887147	G	A	80887147	3	1	305	1	0	0	0	0	1	0	0	0	15645	1014	35	2	2974	2	TBCD	17	80887147	Missense_Mutation	SNP	G	TCGA-BP-4340-01A-01D-1366-10	18868390	80887147	308063	42	19313											
DOCK6	57572	hgsc.bcm.edu	37	19	11311437	11311437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	A	11311437	C	A	11311437	3	1	305	1	0	0	0	0	1	0	0	0	4693	652	23	4	261	4	DOCK6	19	11311437	Missense_Mutation	SNP	C	TCGA-BP-4340-01A-01D-1366-10		11311437	47817546	43	19314											
BRD4	23476	hgsc.bcm.edu;ucsc.edu	37	19	15367030	15367030	+	Silent	SNP	C	C	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	15367030	C	T	15367030	2	4	305	1	0	0	0	0	0	0	0	1	1506	796	28	2		2	BRD4	19	15367030	Silent	SNP	C	TCGA-BP-4340-01A-01D-1366-10	4055593	15367030	43761953	44	19315											
KIAA1644	85352	hgsc.bcm.edu	37	22	44681611	44681611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	G	44681611	A	G	44681611	3	3	305	1	0	0	0	0	1	0	0	0	8257	131	5	3	311	3	KIAA1644	22	44681611	Missense_Mutation	SNP	A	TCGA-BP-4340-01A-01D-1366-10		44681611	6622955	45	19316											
ZNF280C	55609	hgsc.bcm.edu;ucsc.edu	37	X	129377594	129377594	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c8748a7-3d9c-48e1-834f-5b0fcaa11ffd	88066acc-daf3-4d73-965e-d4682521dba6	T	129377594	A	T	129377594	3	4	305	1	0	0	0	0	1	0	0	0	17828	243	9	5	1949	5	ZNF280C	23	129377594	Missense_Mutation	SNP	A	TCGA-BP-4340-01A-01D-1366-10		129377594	25892966	46	19317											
VHL	7428	hgsc.bcm.edu	37	3	10183850	10183850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4340-01A-01W-1362-10	TCGA-BP-4340-11A-01W-1362-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	d171d7fb-084e-4402-bada-d4318793eb71	0c9518f3-0d78-44e3-a5af-cbcc8a2d53bb	G	10183850	C	G	10183850	3	3	306	1	0	0	0	0	1	0	0	0	17174	652	23	4	321	4	VHL	3	10183850	Missense_Mutation	SNP	C	TCGA-BP-4340-01A-01W-1362-10		10183850	187838580	1	19318											
ZBTB48	3104	hgsc.bcm.edu	37	1	6640756	6640756	+	Silent	SNP	T	T	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	6640756	T	A	6640756	2	1	307	1	0	0	0	0	0	0	0	1	17561	1538	54	5		5	ZBTB48	1	6640756	Silent	SNP	T	TCGA-BP-4341-01A-01D-1366-10		6640756	242609865	1	19319											
CAMTA1	23261	hgsc.bcm.edu;ucsc.edu	37	1	7737703	7737703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	7737703	C	A	7737703	3	1	307	1	0	0	0	0	1	0	0	0	2615	595	21	4	2866	4	CAMTA1	1	7737703	Missense_Mutation	SNP	C	TCGA-BP-4341-01A-01D-1366-10	1096947	7737703	241512918	2	19320											
HTR6	3362	hgsc.bcm.edu	37	1	20005532	20005532	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	C	20005532	G	C	20005532	3	2	307	1	0	0	0	0	1	0	0	0	7458	1232	43	4	1004	4	HTR6	1	20005532	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	12267829	20005532	229245089	3	19321											
RBM15	64783	hgsc.bcm.edu	37	1	110883715	110883715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	110883715	G	A	110883715	3	1	307	1	0	0	0	0	1	0	0	0	13129	1261	44	2	1690	2	RBM15	1	110883715	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	90878183	110883715	138366906	4	19322											
TCHHL1	126637	hgsc.bcm.edu;ucsc.edu	37	1	152058664	152058664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	G	152058664	T	G	152058664	3	3	307	1	0	0	0	0	1	0	0	0	15713	1780	62	5	1224	5	TCHHL1	1	152058664	Missense_Mutation	SNP	T	TCGA-BP-4341-01A-01D-1366-10	41174949	152058664	97191957	5	19323											
GON4L	54856	hgsc.bcm.edu;ucsc.edu	37	1	155774833	155774833	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	155774833	T	A	155774833	3	1	307	1	0	0	0	0	1	0	0	0	6579	1464	51	5	5375	5	GON4L	1	155774833	Missense_Mutation	SNP	T	TCGA-BP-4341-01A-01D-1366-10	3716169	155774833	93475788	6	19324											
DTNB	1838	hgsc.bcm.edu;ucsc.edu	37	2	25754365	25754365	+	Silent	SNP	T	T	C	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	C	25754365	T	C	25754365	2	2	307	1	0	0	0	0	0	0	0	1	4791	1722	60	3		3	DTNB	2	25754365	Silent	SNP	T	TCGA-BP-4341-01A-01D-1366-10		25754365	217445008	7	19325											
ZNF385B	151126	hgsc.bcm.edu;ucsc.edu	37	2	180383279	180383279	+	Silent	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	180383279	G	A	180383279	2	1	307	1	0	0	0	0	0	0	0	1	17889	929	33	2		2	ZNF385B	2	180383279	Silent	SNP	G	TCGA-BP-4341-01A-01D-1366-10	154628914	180383279	62816094	8	19326											
OBSL1	23363	hgsc.bcm.edu	37	2	220421377	220421377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	G	220421377	A	G	220421377	3	3	307	1	0	0	0	0	1	0	0	0	10820	43	2	3	1614	3	OBSL1	2	220421377	Missense_Mutation	SNP	A	TCGA-BP-4341-01A-01D-1366-10	40038098	220421377	22777996	9	19327											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188289	10188289	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	-	10188289	A	-	10188289	7	5	307	1	0	1	0	1	0	0	0	0	17174	262	10	0	438	0	VHL	3	10188289	Frame_Shift_Del	DEL	A	TCGA-BP-4341-01A-01D-1366-10		10188289	187834141	10	19328											
DOCK3	1795	hgsc.bcm.edu;ucsc.edu	37	3	51284171	51284171	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	C	51284171	G	C	51284171	3	2	307	1	0	0	0	0	1	0	0	0	4690	1377	48	4	2203	4	DOCK3	3	51284171	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	41095882	51284171	146738259	11	19329											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52621464	52621464	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	52621464	G	A	52621464	4	1	307	1	0	0	0	0	0	1	0	0	11498	1153	40	1	1920	1	PBRM1	3	52621464	Nonsense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	1337293	52621464	145400966	12	19330											
TNFSF10	8743	hgsc.bcm.edu;ucsc.edu	37	3	172232773	172232773	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	172232773	A	T	172232773	3	4	307	1	0	0	0	0	1	0	0	0	16313	304	11	5	713	5	TNFSF10	3	172232773	Missense_Mutation	SNP	A	TCGA-BP-4341-01A-01D-1366-10	119611309	172232773	25789657	13	19331											
POLR2B	5431	hgsc.bcm.edu;ucsc.edu	37	4	57873145	57873145	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	57873145	C	T	57873145	4	4	307	1	0	0	0	0	0	1	0	0	12222	827	29	2	1419	2	POLR2B	4	57873145	Nonsense_Mutation	SNP	C	TCGA-BP-4341-01A-01D-1366-10		57873145	133281131	14	19332											
PALLD	23022	hgsc.bcm.edu	37	4	169842820	169842820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	169842820	G	A	169842820	3	1	307	1	0	0	0	0	1	0	0	0	11414	1319	46	2	3559	2	PALLD	4	169842820	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	111969675	169842820	21311456	15	19333											
PDGFRB	5159	hgsc.bcm.edu	37	5	149506122	149506122	+	Silent	SNP	G	G	C	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	C	149506122	G	C	149506122	2	2	307	1	0	0	0	0	0	0	0	1	11669	1335	47	4		4	PDGFRB	5	149506122	Silent	SNP	G	TCGA-BP-4341-01A-01D-1366-10		149506122	31409138	16	19334											
C6orf146	0	hgsc.bcm.edu;ucsc.edu	37	6	4069285	4069285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	4069285	G	A	4069285	3	1	307	1	0	0	0	0	1	0	0	0	2337	1261	44	2	358	2	C6orf146	6	4069285	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10		4069285	167045782	17	19335											
KLC4	89953	hgsc.bcm.edu;ucsc.edu	37	6	43042370	43042370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	43042370	G	A	43042370	3	1	307	1	0	0	0	0	1	0	0	0	8343	1203	42	2	2005	2	KLC4	6	43042370	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	38973085	43042370	128072697	18	19336											
GRIK2	2898	hgsc.bcm.edu;ucsc.edu	37	6	102483373	102483373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	102483373	G	A	102483373	3	1	307	1	0	0	0	0	1	0	0	0	6781	1116	39	1	2297	1	GRIK2	6	102483373	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	59441003	102483373	68631694	19	19337											
RTN4IP1	84816	hgsc.bcm.edu;ucsc.edu	37	6	107069326	107069326	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	107069326	C	A	107069326	4	1	307	1	0	0	0	0	0	1	0	0	13742	922	32	4	749	4	RTN4IP1	6	107069326	Nonsense_Mutation	SNP	C	TCGA-BP-4341-01A-01D-1366-10	4585953	107069326	64045741	20	19338											
MAP3K5	4217	hgsc.bcm.edu	37	6	137112970	137112970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	137112970	T	A	137112970	3	1	307	1	0	0	0	0	1	0	0	0	9260	1551	54	5	3918	5	MAP3K5	6	137112970	Missense_Mutation	SNP	T	TCGA-BP-4341-01A-01D-1366-10	30043644	137112970	34002097	21	19339											
SYNE1	23345	hgsc.bcm.edu	37	6	152461141	152461141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	152461141	G	T	152461141	3	4	307	1	0	0	0	0	1	0	0	0	15457	1087	38	4	1019	4	SYNE1	6	152461141	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	15348171	152461141	18653926	22	19340											
EGFR	1956	hgsc.bcm.edu	37	7	55259437	55259437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	55259437	G	A	55259437	3	1	307	1	0	0	0	0	1	0	0	0	4969	1087	38	1	2841	1	EGFR	7	55259437	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10		55259437	103879226	23	19341											
FOXP2	93986	hgsc.bcm.edu	37	7	114268729	114268729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	114268729	G	T	114268729	3	4	307	1	0	0	0	0	1	0	0	0	6034	962	34	4	482	4	FOXP2	7	114268729	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	59009292	114268729	44869934	24	19342											
FAM22F	54754	hgsc.bcm.edu	37	9	97081994	97081994	+	Silent	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	97081994	G	A	97081994	2	1	307	1	0	0	0	0	0	0	0	1	5549	1252	44	2		2	FAM22F	9	97081994	Silent	SNP	G	TCGA-BP-4341-01A-01D-1366-10		97081994	44131437	25	19343											
POMT1	10585	hgsc.bcm.edu	37	9	134397604	134397604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	G	134397604	C	G	134397604	3	3	307	1	0	0	0	0	1	0	0	0	12252	680	24	4	2132	4	POMT1	9	134397604	Missense_Mutation	SNP	C	TCGA-BP-4341-01A-01D-1366-10	37315610	134397604	6815827	26	19344											
POLR3A	11128	hgsc.bcm.edu;ucsc.edu	37	10	79744977	79744977	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	C	79744977	G	C	79744977	3	2	307	1	0	0	0	0	1	0	0	0	12235	991	35	4	1011	4	POLR3A	10	79744977	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10		79744977	55789770	27	19345											
MPPED2	744	hgsc.bcm.edu;ucsc.edu	37	11	30435856	30435856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	C	30435856	T	C	30435856	3	2	307	1	0	0	0	0	1	0	0	0	9749	1617	56	3	279	3	MPPED2	11	30435856	Missense_Mutation	SNP	T	TCGA-BP-4341-01A-01D-1366-10		30435856	104570660	28	19346											
FADS3	3995	hgsc.bcm.edu;ucsc.edu	37	11	61643923	61643923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	61643923	G	T	61643923	3	4	307	1	0	0	0	0	1	0	0	0	5371	991	35	4	365	4	FADS3	11	61643923	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	31208067	61643923	73362593	29	19347											
RPS6KB2	6199	hgsc.bcm.edu	37	11	67197002	67197002	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	G	67197002	T	G	67197002	3	3	307	1	0	0	0	0	1	0	0	0	13670	1783	62	5	259	5	RPS6KB2	11	67197002	Missense_Mutation	SNP	T	TCGA-BP-4341-01A-01D-1366-10	5553079	67197002	67809514	30	19348											
MED17	9440	hgsc.bcm.edu;ucsc.edu	37	11	93535101	93535101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	93535101	G	T	93535101	3	4	307	1	0	0	0	0	1	0	0	0	9442	1029	36	4	1463	4	MED17	11	93535101	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	26338099	93535101	41471415	31	19349											
SLCO1B1	10599	hgsc.bcm.edu	37	12	21355424	21355424	+	Splice_Site	SNP	G	G	T	rs143895524	alternate_allele	TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	21355424	G	T	21355424	5	4	307	1	0	0	0	0	0	0	1	0	14736	1014	35	4	1169	4	SLCO1B1	12	21355424	Splice_Site	SNP	G	TCGA-BP-4341-01A-01D-1366-10		21355424	112496471	32	19350											
ADAMTS20	80070	hgsc.bcm.edu;ucsc.edu	37	12	43896209	43896209	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	43896209	C	T	43896209	5	4	307	1	0	0	0	0	0	0	1	0	266	927	32	2	5262	2	ADAMTS20	12	43896209	Splice_Site	SNP	C	TCGA-BP-4341-01A-01D-1366-10	22540785	43896209	89955686	33	19351											
FGD6	55785	hgsc.bcm.edu;ucsc.edu	37	12	95602827	95602827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	95602827	C	A	95602827	3	1	307	1	0	0	0	0	1	0	0	0	5844	710	25	4	2139	4	FGD6	12	95602827	Missense_Mutation	SNP	C	TCGA-BP-4341-01A-01D-1366-10	51706618	95602827	38249068	34	19352											
AHNAK2	113146	hgsc.bcm.edu	37	14	105405419	105405419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	105405419	C	A	105405419	3	1	307	1	0	0	0	0	1	0	0	0	415	797	28	4	1022	4	AHNAK2	14	105405419	Missense_Mutation	SNP	C	TCGA-BP-4341-01A-01D-1366-10		105405419	1944121	35	19353											
FMN1	342184	hgsc.bcm.edu;ucsc.edu	37	15	33358817	33358817	+	Silent	SNP	C	C	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	33358817	C	T	33358817	2	4	307	1	0	0	0	0	0	0	0	1	5956	796	28	2		2	FMN1	15	33358817	Silent	SNP	C	TCGA-BP-4341-01A-01D-1366-10		33358817	69172575	36	19354											
TRPM7	54822	hgsc.bcm.edu;ucsc.edu	37	15	50899483	50899483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	C	50899483	G	C	50899483	3	2	307	1	0	0	0	0	1	0	0	0	16603	942	33	4	3054	4	TRPM7	15	50899483	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10	17540666	50899483	51631909	37	19355											
PRC1	9055	hgsc.bcm.edu;ucsc.edu	37	15	91523521	91523521	+	Silent	SNP	C	C	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	91523521	C	T	91523521	2	4	307	1	0	0	0	0	0	0	0	1	12456	564	20	2		2	PRC1	15	91523521	Silent	SNP	C	TCGA-BP-4341-01A-01D-1366-10	40624038	91523521	11007871	38	19356											
BRD7	29117	hgsc.bcm.edu;ucsc.edu	37	16	50354652	50354652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	G	50354652	A	G	50354652	3	3	307	1	0	0	0	0	1	0	0	0	1507	304	11	3	437	3	BRD7	16	50354652	Missense_Mutation	SNP	A	TCGA-BP-4341-01A-01D-1366-10		50354652	40000101	39	19357											
CHD9	80205	hgsc.bcm.edu	37	16	53358033	53358033	+	Silent	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	53358033	G	A	53358033	2	1	307	1	0	0	0	0	0	0	0	1	3334	991	35	2		2	CHD9	16	53358033	Silent	SNP	G	TCGA-BP-4341-01A-01D-1366-10	3003381	53358033	36996720	40	19358											
CDH8	1006	hgsc.bcm.edu;ucsc.edu	37	16	61761058	61761058	+	Silent	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	61761058	G	A	61761058	2	1	307	1	0	0	0	0	0	0	0	1	3118	1136	40	1		1	CDH8	16	61761058	Silent	SNP	G	TCGA-BP-4341-01A-01D-1366-10	8403025	61761058	28593695	41	19359											
PHLPP2	23035	hgsc.bcm.edu;ucsc.edu	37	16	71689235	71689235	+	Silent	SNP	C	C	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	71689235	C	T	71689235	2	4	307	1	0	0	0	0	0	0	0	1	11862	697	25	2		2	PHLPP2	16	71689235	Silent	SNP	C	TCGA-BP-4341-01A-01D-1366-10	9928177	71689235	18665518	42	19360											
AP1G1	164	hgsc.bcm.edu;ucsc.edu	37	16	71798592	71798592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	C	71798592	T	C	71798592	3	2	307	1	0	0	0	0	1	0	0	0	732	1493	52	3	1756	3	AP1G1	16	71798592	Missense_Mutation	SNP	T	TCGA-BP-4341-01A-01D-1366-10	109357	71798592	18556161	43	19361											
KRT13	3860	hgsc.bcm.edu	37	17	39658938	39658938	+	Splice_Site	SNP	C	C	T	rs145167376		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	39658938	C	T	39658938	5	4	307	1	0	0	0	0	0	0	1	0	8457	521	18	2	368	2	KRT13	17	39658938	Splice_Site	SNP	C	TCGA-BP-4341-01A-01D-1366-10		39658938	41536272	44	19362											
MTMR4	9110	hgsc.bcm.edu	37	17	56584197	56584197	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	56584197	T	A	56584197	3	1	307	1	0	0	0	0	1	0	0	0	9953	1696	59	5	2729	5	MTMR4	17	56584197	Missense_Mutation	SNP	T	TCGA-BP-4341-01A-01D-1366-10	16925259	56584197	24611013	45	19363											
SMCHD1	23347	hgsc.bcm.edu;ucsc.edu	37	18	2796405	2796405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	2796405	G	A	2796405	3	1	307	1	0	0	0	0	1	0	0	0	14801	1275	44	2	6065	2	SMCHD1	18	2796405	Missense_Mutation	SNP	G	TCGA-BP-4341-01A-01D-1366-10		2796405	75280843	46	19364											
FBN3	84467	hgsc.bcm.edu	37	19	8193952	8193952	+	Silent	SNP	G	G	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	8193952	G	A	8193952	2	1	307	1	0	0	0	0	0	0	0	1	5711	1219	43	2		2	FBN3	19	8193952	Silent	SNP	G	TCGA-BP-4341-01A-01D-1366-10		8193952	50935031	47	19365											
EPS15L1	58513	hgsc.bcm.edu	37	19	16547765	16547765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	A	16547765	C	A	16547765	3	1	307	1	0	0	0	0	1	0	0	0	5195	739	26	4	2311	4	EPS15L1	19	16547765	Missense_Mutation	SNP	C	TCGA-BP-4341-01A-01D-1366-10	8353813	16547765	42581218	48	19366											
PCK1	5105	hgsc.bcm.edu	37	20	56136506	56136506	+	Silent	SNP	C	C	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	56136506	C	T	56136506	2	4	307	1	0	0	0	0	0	0	0	1	11588	581	21	2		2	PCK1	20	56136506	Silent	SNP	C	TCGA-BP-4341-01A-01D-1366-10		56136506	6889014	49	19367											
DONSON	29980	hgsc.bcm.edu	37	21	34955918	34955918	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	C	34955918	A	C	34955918	4	2	307	1	0	0	0	0	0	1	0	0	4708	108	4	5	884	5	DONSON	21	34955918	Nonsense_Mutation	SNP	A	TCGA-BP-4341-01A-01D-1366-10		34955918	13173977	50	19368	247	2									
DONSON	29980	hgsc.bcm.edu	37	21	34955920	34955920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	G	34955920	A	G	34955920	3	3	307	1	0	0	0	0	1	0	0	0	4708	420	15	3	886	3	DONSON	21	34955920	Missense_Mutation	SNP	A	TCGA-BP-4341-01A-01D-1366-10	2	34955920	13173975	51	19369	247	2									
UTP14A	10813	hgsc.bcm.edu;ucsc.edu	37	X	129054543	129054543	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4341-01A-01D-1366-10	TCGA-BP-4341-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d641189e-e44b-45e1-b753-73414d7ad31a	70039797-32c1-4349-bb4d-10f6ed415195	T	129054543	A	T	129054543	3	4	307	1	0	0	0	0	1	0	0	0	17107	72	3	5	897	5	UTP14A	23	129054543	Missense_Mutation	SNP	A	TCGA-BP-4341-01A-01D-1366-10		129054543	26216017	52	19370											
STK40	83931	hgsc.bcm.edu	37	1	36814314	36814314	+	Silent	SNP	G	G	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	36814314	G	T	36814314	2	4	308	1	0	0	0	0	0	0	0	1	15319	1103	39	4		4	STK40	1	36814314	Silent	SNP	G	TCGA-BP-4342-01A-01D-1366-10		36814314	212436307	1	19371											
NES	10763	hgsc.bcm.edu;ucsc.edu	37	1	156641414	156641414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	156641414	T	A	156641414	3	1	308	1	0	0	0	0	1	0	0	0	10344	1841	64	5	2303	5	NES	1	156641414	Missense_Mutation	SNP	T	TCGA-BP-4342-01A-01D-1366-10	119827100	156641414	92609207	2	19372											
CD1D	912	hgsc.bcm.edu;ucsc.edu	37	1	158152834	158152834	+	Silent	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	158152834	C	T	158152834	2	4	308	1	0	0	0	0	0	0	0	1	2979	535	19	1		1	CD1D	1	158152834	Silent	SNP	C	TCGA-BP-4342-01A-01D-1366-10	1511420	158152834	91097787	3	19373											
PIK3C2B	5287	hgsc.bcm.edu	37	1	204399061	204399061	+	Silent	SNP	A	A	G	rs2271419	bycluster;byfrequency;by1000genomes	TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	G	204399061	A	G	204399061	2	3	308	1	0	0	0	0	0	0	0	1	11917	175	7	3		3	PIK3C2B	1	204399061	Silent	SNP	A	TCGA-BP-4342-01A-01D-1366-10	46246227	204399061	44851560	4	19374											
CREG2	200407	hgsc.bcm.edu;ucsc.edu	37	2	102000000	102000000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	102000000	G	T	102000000	3	4	308	1	0	0	0	0	1	0	0	0	3867	933	33	4	278	4	CREG2	2	102000000	Missense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10		102000000	141199373	5	19375											
TMEM37	140738	hgsc.bcm.edu;ucsc.edu	37	2	120194864	120194864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	120194864	G	A	120194864	3	1	308	1	0	0	0	0	1	0	0	0	16170	1116	39	1	427	1	TMEM37	2	120194864	Missense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10	18194864	120194864	123004509	6	19376											
COL6A3	1293	hgsc.bcm.edu;ucsc.edu	37	2	238267174	238267174	+	Missense_Mutation	SNP	C	C	T	rs145561490		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	238267174	C	T	238267174	3	4	308	1	0	0	0	0	1	0	0	0	3703	884	31	1	3168	1	COL6A3	2	238267174	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10	118072310	238267174	4932199	7	19377											
ILKAP	80895	hgsc.bcm.edu;ucsc.edu	37	2	239096830	239096830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	239096830	C	T	239096830	3	4	308	1	0	0	0	0	1	0	0	0	7721	855	30	2	843	2	ILKAP	2	239096830	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10	829656	239096830	4102543	8	19378											
CEP97	79598	hgsc.bcm.edu;ucsc.edu	37	3	101476035	101476035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	C	101476035	A	C	101476035	3	2	308	1	0	0	0	0	1	0	0	0	3265	246	9	5	1052	5	CEP97	3	101476035	Missense_Mutation	SNP	A	TCGA-BP-4342-01A-01D-1366-10		101476035	96546395	9	19379											
PAQR9	344838	hgsc.bcm.edu	37	3	142681458	142681458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	142681458	C	T	142681458	3	4	308	1	0	0	0	0	1	0	0	0	11449	768	27	1	416	1	PAQR9	3	142681458	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10	41205423	142681458	55340972	10	19380											
SORCS2	57537	hgsc.bcm.edu	37	4	7677815	7677815	+	Silent	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	7677815	C	T	7677815	2	4	308	1	0	0	0	0	0	0	0	1	14944	883	31	1		1	SORCS2	4	7677815	Silent	SNP	C	TCGA-BP-4342-01A-01D-1366-10		7677815	183476461	11	19381											
PAPSS1	9061	hgsc.bcm.edu;ucsc.edu	37	4	108578089	108578089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	108578089	C	A	108578089	3	1	308	1	0	0	0	0	1	0	0	0	11441	564	20	4	1040	4	PAPSS1	4	108578089	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10	100900274	108578089	82576187	12	19382											
MAP3K1	4214	hgsc.bcm.edu;ucsc.edu	37	5	56178013	56178013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	56178013	G	T	56178013	3	4	308	1	0	0	0	0	1	0	0	0	9250	1348	47	4	3040	4	MAP3K1	5	56178013	Missense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10		56178013	124737247	13	19383											
DMGDH	29958	hgsc.bcm.edu;ucsc.edu	37	5	78328557	78328557	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	78328557	C	T	78328557	4	4	308	1	0	0	0	0	0	1	0	0	4583	624	22	2	1162	2	DMGDH	5	78328557	Nonsense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10	22150544	78328557	102586703	14	19384											
CMYA5	202333	hgsc.bcm.edu;ucsc.edu	37	5	79026966	79026966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	79026966	C	T	79026966	3	4	308	1	0	0	0	0	1	0	0	0	3592	652	23	1	2384	1	CMYA5	5	79026966	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10	698409	79026966	101888294	15	19385											
FAM172A	83989	hgsc.bcm.edu;ucsc.edu	37	5	92956819	92956819	+	Silent	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	92956819	C	T	92956819	2	4	308	1	0	0	0	0	0	0	0	1	5496	796	28	2		2	FAM172A	5	92956819	Silent	SNP	C	TCGA-BP-4342-01A-01D-1366-10	13929853	92956819	87958441	16	19386											
PDGFRB	5159	hgsc.bcm.edu;ucsc.edu	37	5	149506140	149506140	+	Silent	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	149506140	C	T	149506140	2	4	308	1	0	0	0	0	0	0	0	1	11669	581	21	2		2	PDGFRB	5	149506140	Silent	SNP	C	TCGA-BP-4342-01A-01D-1366-10	56549321	149506140	31409120	17	19387											
XPO5	57510	hgsc.bcm.edu;ucsc.edu	37	6	43526277	43526277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	43526277	C	A	43526277	3	1	308	1	0	0	0	0	1	0	0	0	17459	826	29	4	2425	4	XPO5	6	43526277	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10		43526277	127588790	18	19388											
PLA2G7	7941	hgsc.bcm.edu;ucsc.edu	37	6	46675800	46675800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	G	46675800	T	G	46675800	3	3	308	1	0	0	0	0	1	0	0	0	12016	1812	63	5	369	5	PLA2G7	6	46675800	Missense_Mutation	SNP	T	TCGA-BP-4342-01A-01D-1366-10	3149523	46675800	124439267	19	19389											
NR2E1	7101	hgsc.bcm.edu;ucsc.edu	37	6	108502843	108502843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	G	108502843	A	G	108502843	3	3	308	1	0	0	0	0	1	0	0	0	10632	391	14	3	1013	3	NR2E1	6	108502843	Missense_Mutation	SNP	A	TCGA-BP-4342-01A-01D-1366-10	61827043	108502843	62612224	20	19390											
RAC1	5879	hgsc.bcm.edu;ucsc.edu	37	7	6431566	6431566	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	C	6431566	A	C	6431566	3	2	308	1	0	0	0	0	1	0	0	0	12987	449	16	5	129	5	RAC1	7	6431566	Missense_Mutation	SNP	A	TCGA-BP-4342-01A-01D-1366-10		6431566	152707097	21	19391											
PCLO	27445	hgsc.bcm.edu;ucsc.edu	37	7	82581464	82581464	+	Silent	SNP	C	C	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	82581464	C	A	82581464	2	1	308	1	0	0	0	0	0	0	0	1	11590	842	30	4		4	PCLO	7	82581464	Silent	SNP	C	TCGA-BP-4342-01A-01D-1366-10	76149898	82581464	76557199	22	19392											
ARHGEF10	9639	hgsc.bcm.edu;ucsc.edu	37	8	1844542	1844542	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	1844542	A	T	1844542	3	4	308	1	0	0	0	0	1	0	0	0	894	43	2	5	1534	5	ARHGEF10	8	1844542	Missense_Mutation	SNP	A	TCGA-BP-4342-01A-01D-1366-10		1844542	144519480	23	19393											
DMRT2	10655	hgsc.bcm.edu	37	9	1055746	1055746	+	Missense_Mutation	SNP	A	A	G	rs112564390		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	G	1055746	A	G	1055746	3	3	308	1	0	0	0	0	1	0	0	0	4588	449	16	3	663	3	DMRT2	9	1055746	Missense_Mutation	SNP	A	TCGA-BP-4342-01A-01D-1366-10		1055746	140157685	24	19394											
OR10AG1	282770	hgsc.bcm.edu;ucsc.edu	37	11	55735576	55735576	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	55735576	G	A	55735576	4	1	308	1	0	0	0	0	0	1	0	0	10904	1328	46	2	544	2	OR10AG1	11	55735576	Nonsense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10		55735576	79270940	25	19395											
MMP27	64066	hgsc.bcm.edu;ucsc.edu	37	11	102564715	102564715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	102564715	C	T	102564715	3	4	308	1	0	0	0	0	1	0	0	0	9671	536	19	1	438	1	MMP27	11	102564715	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10	46829139	102564715	32441801	26	19396											
LRP1	4035	hgsc.bcm.edu;ucsc.edu	37	12	57570892	57570892	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	C	57570892	A	C	57570892	3	2	308	1	0	0	0	0	1	0	0	0	8958	333	12	5	4158	5	LRP1	12	57570892	Missense_Mutation	SNP	A	TCGA-BP-4342-01A-01D-1366-10		57570892	76281003	27	19397											
SACS	26278	hgsc.bcm.edu;ucsc.edu	37	13	23912564	23912564	+	Silent	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	23912564	C	T	23912564	2	4	308	1	0	0	0	0	0	0	0	1	13817	523	19	1		1	SACS	13	23912564	Silent	SNP	C	TCGA-BP-4342-01A-01D-1366-10		23912564	91257314	28	19398											
SMOC1	64093	hgsc.bcm.edu;ucsc.edu	37	14	70480128	70480128	+	Silent	SNP	G	G	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	70480128	G	A	70480128	2	1	308	1	0	0	0	0	0	0	0	1	14814	1020	36	2		2	SMOC1	14	70480128	Silent	SNP	G	TCGA-BP-4342-01A-01D-1366-10		70480128	36869412	29	19399											
PAPOLA	10914	hgsc.bcm.edu;ucsc.edu	37	14	97010493	97010493	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	G	97010493	T	G	97010493	3	3	308	1	0	0	0	0	1	0	0	0	11436	1493	52	5	1355	5	PAPOLA	14	97010493	Missense_Mutation	SNP	T	TCGA-BP-4342-01A-01D-1366-10	26530365	97010493	10339047	30	19400											
WDR72	256764	hgsc.bcm.edu	37	15	53815521	53815521	+	Splice_Site	SNP	T	T	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	53815521	T	A	53815521	5	1	308	1	0	0	0	0	0	0	1	0	17334	1536	53	5	169	5	WDR72	15	53815521	Splice_Site	SNP	T	TCGA-BP-4342-01A-01D-1366-10		53815521	48715871	31	19401											
ZNF280D	54816	hgsc.bcm.edu;ucsc.edu	37	15	56923779	56923779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	C	56923779	G	C	56923779	3	2	308	1	0	0	0	0	1	0	0	0	17829	1299	45	4	86	4	ZNF280D	15	56923779	Missense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10	3108258	56923779	45607613	32	19402											
MEGF11	84465	hgsc.bcm.edu;ucsc.edu	37	15	66411490	66411490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	66411490	G	A	66411490	3	1	308	1	0	0	0	0	1	0	0	0	9468	1115	39	1	2979	1	MEGF11	15	66411490	Missense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10	9487711	66411490	36119902	33	19403											
C16orf46	123775	hgsc.bcm.edu	37	16	81095065	81095065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	81095065	G	A	81095065	3	1	308	1	0	0	0	0	1	0	0	0	1817	1087	38	1	330	1	C16orf46	16	81095065	Missense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10		81095065	9259688	34	19404											
ITGAE	3682	hgsc.bcm.edu;ucsc.edu	37	17	3643168	3643168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	3643168	G	T	3643168	3	4	308	1	0	0	0	0	1	0	0	0	7892	1232	43	4	1134	4	ITGAE	17	3643168	Missense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10		3643168	77552042	35	19405											
GIT1	28964	hgsc.bcm.edu;ucsc.edu	37	17	27902334	27902334	+	Silent	SNP	G	G	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	27902334	G	T	27902334	2	4	308	1	0	0	0	0	0	0	0	1	6403	1086	38	4		4	GIT1	17	27902334	Silent	SNP	G	TCGA-BP-4342-01A-01D-1366-10	24259166	27902334	53292876	36	19406											
BCAS3	54828	hgsc.bcm.edu;ucsc.edu	37	17	58967107	58967107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	58967107	G	T	58967107	3	4	308	1	0	0	0	0	1	0	0	0	1352	1087	38	4	747	4	BCAS3	17	58967107	Missense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10	31064773	58967107	22228103	37	19407											
ZNF521	25925	hgsc.bcm.edu;ucsc.edu	37	18	22804358	22804358	+	Missense_Mutation	SNP	G	G	A	rs190029761	by1000genomes;alternate_allele	TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	22804358	G	A	22804358	3	1	308	1	0	0	0	0	1	0	0	0	17977	1145	40	1	431	1	ZNF521	18	22804358	Missense_Mutation	SNP	G	TCGA-BP-4342-01A-01D-1366-10		22804358	55272890	38	19408											
RTTN	25914	hgsc.bcm.edu;ucsc.edu	37	18	67727215	67727215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	C	67727215	T	C	67727215	3	2	308	1	0	0	0	0	1	0	0	0	13750	1841	64	3	1925	3	RTTN	18	67727215	Missense_Mutation	SNP	T	TCGA-BP-4342-01A-01D-1366-10	44922857	67727215	10350033	39	19409											
NWD1	284434	hgsc.bcm.edu	37	19	16910747	16910747	+	Silent	SNP	C	C	T	rs112320677	bycluster;byfrequency;by1000genomes	TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	16910747	C	T	16910747	2	4	308	1	0	0	0	0	0	0	0	1	10788	871	31	1		1	NWD1	19	16910747	Silent	SNP	C	TCGA-BP-4342-01A-01D-1366-10		16910747	42218236	40	19410											
ZNF569	148266	hgsc.bcm.edu	37	19	37904476	37904476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	T	37904476	C	T	37904476	3	4	308	1	0	0	0	0	1	0	0	0	18012	797	28	2	980	2	ZNF569	19	37904476	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10	20993729	37904476	21224507	41	19411											
C20orf29	0	hgsc.bcm.edu;ucsc.edu	37	20	3802931	3802931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	3802931	C	A	3802931	3	1	308	1	0	0	0	0	1	0	0	0	2110	797	28	4	169	4	C20orf29	20	3802931	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10		3802931	59222589	42	19412											
KDM5C	8242	hgsc.bcm.edu	37	X	53230855	53230855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	A	53230855	C	A	53230855	3	1	308	1	0	0	0	0	1	0	0	0	8142	796	28	4	2894	4	KDM5C	23	53230855	Missense_Mutation	SNP	C	TCGA-BP-4342-01A-01D-1366-10		53230855	102039705	43	19413											
MAGEC1	9947	hgsc.bcm.edu;ucsc.edu	37	X	140996378	140996380	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BP-4342-01A-01D-1366-10	TCGA-BP-4342-11A-01D-1366-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	538cbccc-8fa8-4ead-a9ec-9fe19f709a18	1ef3a31d-ac99-401c-89a9-44b8466b9177	-	140996380	CTC	-	140996378	7	5	308	1	0	1	0	1	0	0	0	0	9187	913	32	0	3194	0	MAGEC1	23	140996378	In_Frame_Del	DEL	CTC	TCGA-BP-4342-01A-01D-1366-10	87765523	140996378	14274182	44	19414											
VHL	7428	hgsc.bcm.edu	37	3	10183764	10183764	+	Missense_Mutation	SNP	A	A	G	rs5030804		TCGA-BP-4342-01A-01W-1362-10	TCGA-BP-4342-11A-01W-1362-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	7da54727-f4bb-4f89-b348-c3f18775fda2	9734fa6e-4568-41db-963f-22cf694aac6c	G	10183764	A	G	10183764	3	3	309	1	0	0	0	0	1	0	0	0	17174	101	4	3	235	3	VHL	3	10183764	Missense_Mutation	SNP	A	TCGA-BP-4342-01A-01W-1362-10		10183764	187838666	1	19415											
ATAD3C	219293	hgsc.bcm.edu	37	1	1403814	1403814	+	Silent	SNP	C	C	T	rs146537972	by1000genomes	TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	1403814	C	T	1403814	2	4	310	1	0	0	0	0	0	0	0	1	1075	535	19	1		1	ATAD3C	1	1403814	Silent	SNP	C	TCGA-BP-4343-01A-02D-1366-10		1403814	247846807	1	19416											
VPS13D	55187	hgsc.bcm.edu;ucsc.edu	37	1	12403073	12403073	+	Silent	SNP	C	C	T	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	12403073	C	T	12403073	2	4	310	1	0	0	0	0	0	0	0	1	17204	668	24	2		2	VPS13D	1	12403073	Silent	SNP	C	TCGA-BP-4343-01A-02D-1366-10	10999259	12403073	236847548	2	19417											
AKR7L	246181	hgsc.bcm.edu	37	1	19595194	19595194	+	Missense_Mutation	SNP	A	A	G	rs75616155	bycluster;byfrequency;by1000genomes	TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	G	19595194	A	G	19595194	3	3	310	1	0	0	0	0	1	0	0	0	477	86	3	3	297	3	AKR7L	1	19595194	Missense_Mutation	SNP	A	TCGA-BP-4343-01A-02D-1366-10	7192121	19595194	229655427	3	19418											
PTPRU	10076	hgsc.bcm.edu	37	1	29618536	29618536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	29618536	G	T	29618536	3	4	310	1	0	0	0	0	1	0	0	0	12826	1116	39	4	2566	4	PTPRU	1	29618536	Missense_Mutation	SNP	G	TCGA-BP-4343-01A-02D-1366-10	10023342	29618536	219632085	4	19419											
DMBX1	127343	hgsc.bcm.edu	37	1	46976717	46976717	+	Silent	SNP	C	C	T	rs12045245	bycluster;byfrequency;by1000genomes	TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	46976717	C	T	46976717	2	4	310	1	0	0	0	0	0	0	0	1	4580	639	23	1		1	DMBX1	1	46976717	Silent	SNP	C	TCGA-BP-4343-01A-02D-1366-10	17358181	46976717	202273904	5	19420											
IWS1	55677	hgsc.bcm.edu	37	2	128262648	128262648	+	Silent	SNP	T	T	C	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	C	128262648	T	C	128262648	2	2	310	1	0	0	0	0	0	0	0	1	7938	1838	64	3		3	IWS1	2	128262648	Silent	SNP	T	TCGA-BP-4343-01A-02D-1366-10		128262648	114936725	6	19421											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47079155	47079155	+	Splice_Site	SNP	C	C	G	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	G	47079155	C	G	47079155	5	3	310	1	0	0	0	0	0	0	1	0	14144	521	18	4	359	4	SETD2	3	47079155	Splice_Site	SNP	C	TCGA-BP-4343-01A-02D-1366-10		47079155	150943275	7	19422											
C3orf72	401089	hgsc.bcm.edu	37	3	138669387	138669387	+	Silent	SNP	C	C	T	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	138669387	C	T	138669387	2	4	310	1	0	0	0	0	0	0	0	1	2246	709	25	2		2	C3orf72	3	138669387	Silent	SNP	C	TCGA-BP-4343-01A-02D-1366-10	91590232	138669387	59353043	8	19423											
EIF4G1	1981	hgsc.bcm.edu	37	3	184041029	184041029	+	Silent	SNP	G	G	T	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	184041029	G	T	184041029	2	4	310	1	0	0	0	0	0	0	0	1	5038	1130	39	4		4	EIF4G1	3	184041029	Silent	SNP	G	TCGA-BP-4343-01A-02D-1366-10	45371642	184041029	13981401	9	19424											
PPARGC1A	10891	hgsc.bcm.edu;ucsc.edu	37	4	23886513	23886513	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	C	23886513	A	C	23886513	3	2	310	1	0	0	0	0	1	0	0	0	12307	330	12	5	2348	5	PPARGC1A	4	23886513	Missense_Mutation	SNP	A	TCGA-BP-4343-01A-02D-1366-10		23886513	167267763	10	19425											
PLEKHG4B	153478	hgsc.bcm.edu	37	5	155056	155056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	A	155056	C	A	155056	3	1	310	1	0	0	0	0	1	0	0	0	12079	681	24	4	1013	4	PLEKHG4B	5	155056	Missense_Mutation	SNP	C	TCGA-BP-4343-01A-02D-1366-10		155056	180760204	11	19426											
SPZ1	84654	hgsc.bcm.edu;ucsc.edu	37	5	79616716	79616716	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	C	79616716	G	C	79616716	3	2	310	1	0	0	0	0	1	0	0	0	15139	1175	41	4	684	4	SPZ1	5	79616716	Missense_Mutation	SNP	G	TCGA-BP-4343-01A-02D-1366-10	79461660	79616716	101298544	12	19427											
MAML1	9794	hgsc.bcm.edu	37	5	179201298	179201298	+	Missense_Mutation	SNP	C	C	T	rs61753466	bycluster;byfrequency;by1000genomes	TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	179201298	C	T	179201298	3	4	310	1	0	0	0	0	1	0	0	0	9212	652	23	1	2489	1	MAML1	5	179201298	Missense_Mutation	SNP	C	TCGA-BP-4343-01A-02D-1366-10	99584582	179201298	1713962	13	19428											
MOCS1	4337	hgsc.bcm.edu	37	6	39895231	39895231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	39895231	G	T	39895231	3	4	310	1	0	0	0	0	1	0	0	0	9697	1310	46	4	1106	4	MOCS1	6	39895231	Missense_Mutation	SNP	G	TCGA-BP-4343-01A-02D-1366-10		39895231	131219836	14	19429											
SLC35B2	347734	hgsc.bcm.edu	37	6	44223195	44223195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	C	44223195	T	C	44223195	3	2	310	1	0	0	0	0	1	0	0	0	14589	1464	51	3	755	3	SLC35B2	6	44223195	Missense_Mutation	SNP	T	TCGA-BP-4343-01A-02D-1366-10	4327964	44223195	126891872	15	19430											
TRHR	7201	hgsc.bcm.edu	37	8	110100374	110100374	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	A	110100374	T	A	110100374	4	1	310	1	0	0	0	0	0	1	0	0	16492	1471	51	5	635	5	TRHR	8	110100374	Nonsense_Mutation	SNP	T	TCGA-BP-4343-01A-02D-1366-10		110100374	36263648	16	19431											
JAK2	3717	hgsc.bcm.edu	37	9	5072549	5072549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	5072549	G	T	5072549	3	4	310	1	0	0	0	0	1	0	0	0	7945	1029	36	4	1741	4	JAK2	9	5072549	Missense_Mutation	SNP	G	TCGA-BP-4343-01A-02D-1366-10		5072549	136140882	17	19432											
GATA3	2625	hgsc.bcm.edu;ucsc.edu	37	10	8115905	8115905	+	Silent	SNP	C	C	T	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	8115905	C	T	8115905	2	4	310	1	0	0	0	0	0	0	0	1	6262	581	21	2		2	GATA3	10	8115905	Silent	SNP	C	TCGA-BP-4343-01A-02D-1366-10		8115905	127418842	18	19433											
ZNF365	22891	hgsc.bcm.edu;ucsc.edu	37	10	64159446	64159446	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	G	64159446	C	G	64159446	3	3	310	1	0	0	0	0	1	0	0	0	17881	718	25	4	1136	4	ZNF365	10	64159446	Missense_Mutation	SNP	C	TCGA-BP-4343-01A-02D-1366-10	56043541	64159446	71375301	19	19434											
TET1	80312	hgsc.bcm.edu	37	10	70450818	70450818	+	Silent	SNP	A	A	G	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	G	70450818	A	G	70450818	2	3	310	1	0	0	0	0	0	0	0	1	15781	233	9	3		3	TET1	10	70450818	Silent	SNP	A	TCGA-BP-4343-01A-02D-1366-10	6291372	70450818	65083929	20	19435											
C10orf79	0	hgsc.bcm.edu;ucsc.edu	37	10	105893489	105893489	+	Silent	SNP	T	T	C	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	C	105893489	T	C	105893489	2	2	310	1	0	0	0	0	0	0	0	1	1620	1838	64	3		3	C10orf79	10	105893489	Silent	SNP	T	TCGA-BP-4343-01A-02D-1366-10	35442671	105893489	29641258	21	19436											
VENTX	27287	hgsc.bcm.edu	37	10	135053527	135053527	+	Missense_Mutation	SNP	C	C	T	rs150065198	byfrequency	TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	135053527	C	T	135053527	3	4	310	1	0	0	0	0	1	0	0	0	17165	768	27	1	504	1	VENTX	10	135053527	Missense_Mutation	SNP	C	TCGA-BP-4343-01A-02D-1366-10	29160038	135053527	481220	22	19437											
ZP1	22917	hgsc.bcm.edu	37	11	60637829	60637829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	A	60637829	G	A	60637829	3	1	310	1	0	0	0	0	1	0	0	0	18227	1319	46	2	721	2	ZP1	11	60637829	Missense_Mutation	SNP	G	TCGA-BP-4343-01A-02D-1366-10		60637829	74368687	23	19438											
KIF21A	55605	hgsc.bcm.edu	37	12	39695437	39695437	+	Silent	SNP	C	C	A	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	A	39695437	C	A	39695437	2	1	310	1	0	0	0	0	0	0	0	1	8295	581	21	4		4	KIF21A	12	39695437	Silent	SNP	C	TCGA-BP-4343-01A-02D-1366-10		39695437	94156458	24	19439											
CDK4	1019	hgsc.bcm.edu;ucsc.edu	37	12	58144726	58144726	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	C	58144726	G	C	58144726	3	2	310	1	0	0	0	0	1	0	0	0	3143	1357	47	4	429	4	CDK4	12	58144726	Missense_Mutation	SNP	G	TCGA-BP-4343-01A-02D-1366-10	18449289	58144726	75707169	25	19440											
TRPM1	4308	hgsc.bcm.edu;ucsc.edu	37	15	31355418	31355418	+	Silent	SNP	G	G	A	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	A	31355418	G	A	31355418	2	1	310	1	0	0	0	0	0	0	0	1	16597	991	35	2		2	TRPM1	15	31355418	Silent	SNP	G	TCGA-BP-4343-01A-02D-1366-10		31355418	71175974	26	19441											
ATP2C2	9914	hgsc.bcm.edu	37	16	84495698	84495698	+	Silent	SNP	G	G	C	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	C	84495698	G	C	84495698	2	2	310	1	0	0	0	0	0	0	0	1	1144	1306	46	4		4	ATP2C2	16	84495698	Silent	SNP	G	TCGA-BP-4343-01A-02D-1366-10		84495698	5859055	27	19442											
SLC13A2	9058	hgsc.bcm.edu	37	17	26817926	26817926	+	Splice_Site	SNP	T	T	G	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	G	26817926	T	G	26817926	5	3	310	1	0	0	0	0	0	0	1	0	14405	1710	59	5	737	5	SLC13A2	17	26817926	Splice_Site	SNP	T	TCGA-BP-4343-01A-02D-1366-10		26817926	54377284	28	19443											
EHD2	30846	hgsc.bcm.edu	37	19	48239721	48239721	+	Silent	SNP	C	C	A	rs141588825	alternate_allele	TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	A	48239721	C	A	48239721	2	1	310	1	0	0	0	0	0	0	0	1	4980	813	29	4		4	EHD2	19	48239721	Silent	SNP	C	TCGA-BP-4343-01A-02D-1366-10		48239721	10889262	29	19444											
TMC4	147798	hgsc.bcm.edu	37	19	54675643	54675643	+	Missense_Mutation	SNP	G	G	A	rs77215230	bycluster;byfrequency;by1000genomes	TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	A	54675643	G	A	54675643	3	1	310	1	0	0	0	0	1	0	0	0	15999	1377	48	2	1887	2	TMC4	19	54675643	Missense_Mutation	SNP	G	TCGA-BP-4343-01A-02D-1366-10	6435922	54675643	4453340	30	19445											
CHRNA4	1137	hgsc.bcm.edu	37	20	61987735	61987735	+	Silent	SNP	T	T	C	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	C	61987735	T	C	61987735	2	2	310	1	0	0	0	0	0	0	0	1	3387	1393	49	3		3	CHRNA4	20	61987735	Silent	SNP	T	TCGA-BP-4343-01A-02D-1366-10		61987735	1037785	31	19446											
TRAPPC10	7109	hgsc.bcm.edu;ucsc.edu	37	21	45502925	45502925	+	Silent	SNP	G	G	A	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	A	45502925	G	A	45502925	2	1	310	1	0	0	0	0	0	0	0	1	16469	933	33	2		2	TRAPPC10	21	45502925	Silent	SNP	G	TCGA-BP-4343-01A-02D-1366-10		45502925	2626970	32	19447											
PHKA2	5256	hgsc.bcm.edu	37	X	18926100	18926100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	T	18926100	C	T	18926100	3	4	310	1	0	0	0	0	1	0	0	0	11851	623	22	2	1320	2	PHKA2	23	18926100	Missense_Mutation	SNP	C	TCGA-BP-4343-01A-02D-1366-10		18926100	136344460	33	19448											
IL1RAPL2	26280	hgsc.bcm.edu;ucsc.edu	37	X	104961395	104961395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4343-01A-02D-1366-10	TCGA-BP-4343-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7195f58b-26ad-4015-af27-07f1c578b3ab	488a3842-7fc6-401c-b901-2cae0e89a9de	A	104961395	G	A	104961395	3	1	310	1	0	0	0	0	1	0	0	0	7669	1117	39	1	830	1	IL1RAPL2	23	104961395	Missense_Mutation	SNP	G	TCGA-BP-4343-01A-02D-1366-10	86035295	104961395	50309165	34	19449											
CCDC17	149483	hgsc.bcm.edu	37	1	46086449	46086449	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	G	46086449	C	G	46086449	3	3	311	1	0	0	0	0	1	0	0	0	2795	912	32	4	220	4	CCDC17	1	46086449	Missense_Mutation	SNP	C	TCGA-BP-4345-01A-01D-1366-10		46086449	203164172	1	19450											
OR6N1	128372	hgsc.bcm.edu;ucsc.edu	37	1	158735712	158735712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	A	158735712	C	A	158735712	3	1	311	1	0	0	0	0	1	0	0	0	11213	797	28	4	180	4	OR6N1	1	158735712	Missense_Mutation	SNP	C	TCGA-BP-4345-01A-01D-1366-10	112649263	158735712	90514909	2	19451											
TRIM58	25893	hgsc.bcm.edu	37	1	248039262	248039262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	T	248039262	G	T	248039262	3	4	311	1	0	0	0	0	1	0	0	0	16543	1087	38	4	954	4	TRIM58	1	248039262	Missense_Mutation	SNP	G	TCGA-BP-4345-01A-01D-1366-10	89303550	248039262	1211359	3	19452											
RNF144A	9781	hgsc.bcm.edu	37	2	7160712	7160712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	A	7160712	C	A	7160712	3	1	311	1	0	0	0	0	1	0	0	0	13458	739	26	4	424	4	RNF144A	2	7160712	Missense_Mutation	SNP	C	TCGA-BP-4345-01A-01D-1366-10		7160712	236038661	4	19453											
ZDBF2	57683	hgsc.bcm.edu;ucsc.edu	37	2	207169576	207169576	+	Silent	SNP	C	C	G	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	G	207169576	C	G	207169576	2	3	311	1	0	0	0	0	0	0	0	1	17611	639	23	4		4	ZDBF2	2	207169576	Silent	SNP	C	TCGA-BP-4345-01A-01D-1366-10	200008864	207169576	36029797	5	19454											
DNER	92737	hgsc.bcm.edu	37	2	230231641	230231641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	T	230231641	G	T	230231641	3	4	311	1	0	0	0	0	1	0	0	0	4669	1116	39	4	171	4	DNER	2	230231641	Missense_Mutation	SNP	G	TCGA-BP-4345-01A-01D-1366-10	23062065	230231641	12967732	6	19455											
NFKBIL1	4795	hgsc.bcm.edu	37	6	31525512	31525512	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	G	31525512	T	G	31525512	3	3	311	1	0	0	0	0	1	0	0	0	10388	1580	55	5	452	5	NFKBIL1	6	31525512	Missense_Mutation	SNP	T	TCGA-BP-4345-01A-01D-1366-10		31525512	139589555	7	19456											
TIAM2	26230	hgsc.bcm.edu	37	6	155451458	155451458	+	Silent	SNP	T	T	C	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	C	155451458	T	C	155451458	2	2	311	1	0	0	0	0	0	0	0	1	15903	1799	63	3		3	TIAM2	6	155451458	Silent	SNP	T	TCGA-BP-4345-01A-01D-1366-10	123925946	155451458	15663609	8	19457											
C7orf27	0	hgsc.bcm.edu	37	7	2579268	2579268	+	Missense_Mutation	SNP	G	G	A	rs147745609	byfrequency	TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	A	2579268	G	A	2579268	3	1	311	1	0	0	0	0	1	0	0	0	2384	1232	43	2	970	2	C7orf27	7	2579268	Missense_Mutation	SNP	G	TCGA-BP-4345-01A-01D-1366-10		2579268	156559395	9	19458											
TECPR1	25851	hgsc.bcm.edu	37	7	97874261	97874261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	C	97874261	T	C	97874261	3	2	311	1	0	0	0	0	1	0	0	0	15755	1696	59	3	3245	3	TECPR1	7	97874261	Missense_Mutation	SNP	T	TCGA-BP-4345-01A-01D-1366-10	95294993	97874261	61264402	10	19459											
PPP3R2	5535	hgsc.bcm.edu	37	9	104356948	104356948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	A	104356948	C	A	104356948	3	1	311	1	0	0	0	0	1	0	0	0	12411	623	22	4	260	4	PPP3R2	9	104356948	Missense_Mutation	SNP	C	TCGA-BP-4345-01A-01D-1366-10		104356948	36856483	11	19460											
PAPSS2	9060	hgsc.bcm.edu	37	10	89503130	89503130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	G	89503130	A	G	89503130	3	3	311	1	0	0	0	0	1	0	0	0	11442	347	12	3	1265	3	PAPSS2	10	89503130	Missense_Mutation	SNP	A	TCGA-BP-4345-01A-01D-1366-10		89503130	46031617	12	19461											
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121909229	bycluster	TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	A	89692905	G	A	89692905	3	1	311	1	0	0	0	0	1	0	0	0	12748	1058	37	1	407	1	PTEN	10	89692905	Missense_Mutation	SNP	G	TCGA-BP-4345-01A-01D-1366-10	189775	89692905	45841842	13	19462											
INO80	54617	hgsc.bcm.edu;ucsc.edu	37	15	41313241	41313241	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	T	41313241	A	T	41313241	3	4	311	1	0	0	0	0	1	0	0	0	7753	188	7	5	1583	5	INO80	15	41313241	Missense_Mutation	SNP	A	TCGA-BP-4345-01A-01D-1366-10		41313241	61218151	14	19463											
DUOX1	53905	hgsc.bcm.edu	37	15	45436386	45436386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	T	45436386	C	T	45436386	3	4	311	1	0	0	0	0	1	0	0	0	4802	652	23	1	2151	1	DUOX1	15	45436386	Missense_Mutation	SNP	C	TCGA-BP-4345-01A-01D-1366-10	4123145	45436386	57095006	15	19464											
ANPEP	290	hgsc.bcm.edu	37	15	90342657	90342657	+	Silent	SNP	C	C	A	rs184252270	by1000genomes;alternate_allele	TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	A	90342657	C	A	90342657	2	1	311	1	0	0	0	0	0	0	0	1	710	666	23	4		4	ANPEP	15	90342657	Silent	SNP	C	TCGA-BP-4345-01A-01D-1366-10	44906271	90342657	12188735	16	19465											
MMP2	4313	hgsc.bcm.edu	37	16	55530885	55530885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	C	55530885	T	C	55530885	3	2	311	1	0	0	0	0	1	0	0	0	9665	1580	55	3	1565	3	MMP2	16	55530885	Missense_Mutation	SNP	T	TCGA-BP-4345-01A-01D-1366-10		55530885	34823868	17	19466											
NTN5	126147	hgsc.bcm.edu;ucsc.edu	37	19	49166772	49166772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	T	49166772	C	T	49166772	3	4	311	1	0	0	0	0	1	0	0	0	10710	478	17	2	424	2	NTN5	19	49166772	Missense_Mutation	SNP	C	TCGA-BP-4345-01A-01D-1366-10		49166772	9962211	18	19467											
MAMLD1	10046	hgsc.bcm.edu;ucsc.edu	37	X	149613802	149613802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4345-01A-01D-1366-10	TCGA-BP-4345-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	deda137c-5c13-41d4-95e1-9105db3c953b	6831bc8a-3618-41d4-99d3-5c570ed37ae7	A	149613802	G	A	149613802	3	1	311	1	0	0	0	0	1	0	0	0	9215	1116	39	1	22	1	MAMLD1	23	149613802	Missense_Mutation	SNP	G	TCGA-BP-4345-01A-01D-1366-10		149613802	5656758	19	19468											
ATP13A2	23400	hgsc.bcm.edu	37	1	17318322	17318322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	17318322	C	T	17318322	3	4	312	1	0	0	0	0	1	0	0	0	1124	623	22	2	1660	2	ATP13A2	1	17318322	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10		17318322	231932299	1	19469											
LGTN	100529141	hgsc.bcm.edu	37	1	206776435	206776435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	206776435	C	T	206776435	3	4	312	1	0	0	0	0	1	0	0	0	8767	826	29	2	1140	2	LGTN	1	206776435	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10	189458113	206776435	42474186	2	19470											
HLX	3142	hgsc.bcm.edu;ucsc.edu	37	1	221055659	221055659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	221055659	T	C	221055659	3	2	312	1	0	0	0	0	1	0	0	0	7223	1580	55	3	936	3	HLX	1	221055659	Missense_Mutation	SNP	T	TCGA-BP-4346-01A-01D-1366-10	14279224	221055659	28194962	3	19471											
AIDA	64853	hgsc.bcm.edu	37	1	222843559	222843559	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	222843559	T	A	222843559	3	1	312	1	0	0	0	0	1	0	0	0	423	1609	56	5	188	5	AIDA	1	222843559	Missense_Mutation	SNP	T	TCGA-BP-4346-01A-01D-1366-10	1787900	222843559	26407062	4	19472											
HNRPLL	92906	hgsc.bcm.edu;ucsc.edu	37	2	38800465	38800465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	38800465	T	C	38800465	3	2	312	1	0	0	0	0	1	0	0	0	7284	1464	51	3	673	3	HNRPLL	2	38800465	Missense_Mutation	SNP	T	TCGA-BP-4346-01A-01D-1366-10		38800465	204398908	5	19473											
ANKRD44	91526	hgsc.bcm.edu;ucsc.edu	37	2	197954719	197954719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	197954719	C	T	197954719	3	4	312	1	0	0	0	0	1	0	0	0	672	710	25	2	1760	2	ANKRD44	2	197954719	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10	159154254	197954719	45244654	6	19474											
LARS2	23395	hgsc.bcm.edu	37	3	45583404	45583404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	45583404	C	A	45583404	3	1	312	1	0	0	0	0	1	0	0	0	8642	623	22	4	2562	4	LARS2	3	45583404	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10		45583404	152439026	7	19475											
CACNA1D	776	hgsc.bcm.edu;ucsc.edu	37	3	53845146	53845146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	G	53845146	A	G	53845146	3	3	312	1	0	0	0	0	1	0	0	0	2543	333	12	3	6561	3	CACNA1D	3	53845146	Missense_Mutation	SNP	A	TCGA-BP-4346-01A-01D-1366-10	8261742	53845146	144177284	8	19476											
C3orf30	152405	hgsc.bcm.edu	37	3	118865300	118865300	+	Silent	SNP	C	C	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	118865300	C	A	118865300	2	1	312	1	0	0	0	0	0	0	0	1	2222	726	26	4		4	C3orf30	3	118865300	Silent	SNP	C	TCGA-BP-4346-01A-01D-1366-10	65020154	118865300	79157130	9	19477											
RHO	6010	hgsc.bcm.edu	37	3	129249846	129249846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	129249846	G	T	129249846	3	4	312	1	0	0	0	0	1	0	0	0	13343	1348	47	4	495	4	RHO	3	129249846	Missense_Mutation	SNP	G	TCGA-BP-4346-01A-01D-1366-10	10384546	129249846	68772584	10	19478											
SERPINI1	5274	hgsc.bcm.edu;ucsc.edu	37	3	167508176	167508176	+	Silent	SNP	C	C	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	167508176	C	T	167508176	2	4	312	1	0	0	0	0	0	0	0	1	14131	912	32	2		2	SERPINI1	3	167508176	Silent	SNP	C	TCGA-BP-4346-01A-01D-1366-10	38258330	167508176	30514254	11	19479											
TIGD2	166815	hgsc.bcm.edu	37	4	90034133	90034133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	90034133	G	T	90034133	3	4	312	1	0	0	0	0	1	0	0	0	15908	1232	43	4	10	4	TIGD2	4	90034133	Missense_Mutation	SNP	G	TCGA-BP-4346-01A-01D-1366-10		90034133	101120143	12	19480											
PRDM5	11107	hgsc.bcm.edu;ucsc.edu	37	4	121631520	121631520	+	Silent	SNP	G	G	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	121631520	G	T	121631520	2	4	312	1	0	0	0	0	0	0	0	1	12470	1095	38	4		4	PRDM5	4	121631520	Silent	SNP	G	TCGA-BP-4346-01A-01D-1366-10	31597387	121631520	69522756	13	19481											
NUP153	9972	hgsc.bcm.edu	37	6	17637570	17637570	+	Silent	SNP	A	A	G	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	G	17637570	A	G	17637570	2	3	312	1	0	0	0	0	0	0	0	1	10762	98	4	3		3	NUP153	6	17637570	Silent	SNP	A	TCGA-BP-4346-01A-01D-1366-10		17637570	153477497	14	19482											
PRSS16	10279	hgsc.bcm.edu	37	6	27216901	27216901	+	Silent	SNP	A	A	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	27216901	A	C	27216901	2	2	312	1	0	0	0	0	0	0	0	1	12626	175	7	5		5	PRSS16	6	27216901	Silent	SNP	A	TCGA-BP-4346-01A-01D-1366-10	9579331	27216901	143898166	15	19483											
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32632777	32632777	+	Silent	SNP	C	C	T	rs79502177		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	32632777	C	T	32632777	2	4	312	1	0	0	0	0	0	0	0	1	7213	813	29	2		2	HLA-DQB1	6	32632777	Silent	SNP	C	TCGA-BP-4346-01A-01D-1366-10	5415876	32632777	138482290	16	19484											
SKAP2	8935	hgsc.bcm.edu	37	7	26765559	26765559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	26765559	A	C	26765559	3	2	312	1	0	0	0	0	1	0	0	0	14369	188	7	5	458	5	SKAP2	7	26765559	Missense_Mutation	SNP	A	TCGA-BP-4346-01A-01D-1366-10		26765559	132373104	17	19485											
URGCP	55665	hgsc.bcm.edu	37	7	43918276	43918276	+	Silent	SNP	G	G	C	rs144106376	alternate_allele	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	43918276	G	C	43918276	2	2	312	1	0	0	0	0	0	0	0	1	17038	987	35	4		4	URGCP	7	43918276	Silent	SNP	G	TCGA-BP-4346-01A-01D-1366-10	17152717	43918276	115220387	18	19486											
PTCD1	26024	hgsc.bcm.edu	37	7	99022803	99022803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	99022803	G	T	99022803	3	4	312	1	0	0	0	0	1	0	0	0	12737	1377	48	4	762	4	PTCD1	7	99022803	Missense_Mutation	SNP	G	TCGA-BP-4346-01A-01D-1366-10	55104527	99022803	60115860	19	19487											
TAS2R38	5726	hgsc.bcm.edu	37	7	141672558	141672558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	G	141672558	A	G	141672558	3	3	312	1	0	0	0	0	1	0	0	0	15587	101	4	3	73	3	TAS2R38	7	141672558	Missense_Mutation	SNP	A	TCGA-BP-4346-01A-01D-1366-10	42649755	141672558	17466105	20	19488											
ASPH	444	hgsc.bcm.edu;ucsc.edu	37	8	62577970	62577970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	62577970	T	A	62577970	3	1	312	1	0	0	0	0	1	0	0	0	1053	1783	62	5	2218	5	ASPH	8	62577970	Missense_Mutation	SNP	T	TCGA-BP-4346-01A-01D-1366-10		62577970	83786052	21	19489											
VCP	7415	hgsc.bcm.edu;ucsc.edu	37	9	35059494	35059494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	35059494	G	A	35059494	3	1	312	1	0	0	0	0	1	0	0	0	17152	1203	42	2	436	2	VCP	9	35059494	Missense_Mutation	SNP	G	TCGA-BP-4346-01A-01D-1366-10		35059494	106153937	22	19490											
COL15A1	1306	hgsc.bcm.edu	37	9	101748184	101748184	+	Silent	SNP	C	C	A	rs7045978	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	101748184	C	A	101748184	2	1	312	1	0	0	0	0	0	0	0	1	3674	610	22	4		4	COL15A1	9	101748184	Silent	SNP	C	TCGA-BP-4346-01A-01D-1366-10	66688690	101748184	39465247	23	19491											
DCHS1	8642	hgsc.bcm.edu	37	11	6646503	6646503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	6646503	C	A	6646503	3	1	312	1	0	0	0	0	1	0	0	0	4289	623	22	4	2836	4	DCHS1	11	6646503	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10		6646503	128360013	24	19492											
CCDC88B	283234	hgsc.bcm.edu;ucsc.edu	37	11	64121227	64121227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	64121227	G	A	64121227	3	1	312	1	0	0	0	0	1	0	0	0	2866	1145	40	1	3964	1	CCDC88B	11	64121227	Missense_Mutation	SNP	G	TCGA-BP-4346-01A-01D-1366-10	57474724	64121227	70885289	25	19493											
RPS3	6188	hgsc.bcm.edu	37	11	75113406	75113406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	75113406	A	C	75113406	3	2	312	1	0	0	0	0	1	0	0	0	13656	246	9	5	280	5	RPS3	11	75113406	Missense_Mutation	SNP	A	TCGA-BP-4346-01A-01D-1366-10	10992179	75113406	59893110	26	19494											
TMPRSS12	283471	hgsc.bcm.edu;ucsc.edu	37	12	51252806	51252806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	G	51252806	A	G	51252806	3	3	312	1	0	0	0	0	1	0	0	0	16256	449	16	3	632	3	TMPRSS12	12	51252806	Missense_Mutation	SNP	A	TCGA-BP-4346-01A-01D-1366-10		51252806	82599089	27	19495											
SDR9C7	121214	hgsc.bcm.edu	37	12	57323228	57323228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	57323228	C	T	57323228	3	4	312	1	0	0	0	0	1	0	0	0	13987	864	30	2	279	2	SDR9C7	12	57323228	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10	6070422	57323228	76528667	28	19496											
FAM179B	23116	hgsc.bcm.edu	37	14	45514044	45514044	+	Silent	SNP	A	A	G	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	G	45514044	A	G	45514044	2	3	312	1	0	0	0	0	0	0	0	1	5510	175	7	3		3	FAM179B	14	45514044	Silent	SNP	A	TCGA-BP-4346-01A-01D-1366-10		45514044	61835496	29	19497											
SDCCAG1	0	hgsc.bcm.edu;ucsc.edu	37	14	50312885	50312885	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	50312885	G	C	50312885	4	2	312	1	0	0	0	0	0	1	0	0	13970	1256	44	4	3020	4	SDCCAG1	14	50312885	Nonsense_Mutation	SNP	G	TCGA-BP-4346-01A-01D-1366-10	4798841	50312885	57036655	30	19498											
PLEKHH1	57475	hgsc.bcm.edu;ucsc.edu	37	14	68040063	68040063	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	G	68040063	T	G	68040063	3	3	312	1	0	0	0	0	1	0	0	0	12083	1841	64	5	1841	5	PLEKHH1	14	68040063	Missense_Mutation	SNP	T	TCGA-BP-4346-01A-01D-1366-10	17727178	68040063	39309477	31	19499											
CPSF2	53981	hgsc.bcm.edu;ucsc.edu	37	14	92604675	92604675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	92604675	A	T	92604675	3	4	312	1	0	0	0	0	1	0	0	0	3827	301	11	5	663	5	CPSF2	14	92604675	Missense_Mutation	SNP	A	TCGA-BP-4346-01A-01D-1366-10	24564612	92604675	14744865	32	19500											
PAK6	56924	hgsc.bcm.edu;ucsc.edu	37	15	40564426	40564426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	40564426	C	T	40564426	3	4	312	1	0	0	0	0	1	0	0	0	11411	637	22	2	870	2	PAK6	15	40564426	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10		40564426	61966966	33	19501											
UBN1	29855	hgsc.bcm.edu	37	16	4911047	4911047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	4911047	T	C	4911047	3	2	312	1	0	0	0	0	1	0	0	0	16904	1783	62	3	1076	3	UBN1	16	4911047	Missense_Mutation	SNP	T	TCGA-BP-4346-01A-01D-1366-10		4911047	85443706	34	19502											
SLC6A2	6530	hgsc.bcm.edu	37	16	55734212	55734212	+	Silent	SNP	T	T	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	55734212	T	C	55734212	2	2	312	1	0	0	0	0	0	0	0	1	14696	1828	64	3		3	SLC6A2	16	55734212	Silent	SNP	T	TCGA-BP-4346-01A-01D-1366-10	50823165	55734212	34620541	35	19503											
CTU2	348180	hgsc.bcm.edu	37	16	88781504	88781504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	88781504	C	A	88781504	3	1	312	1	0	0	0	0	1	0	0	0	4050	652	23	4	1522	4	CTU2	16	88781504	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10	33047292	88781504	1573249	36	19504											
FAM83G	644815	hgsc.bcm.edu;ucsc.edu	37	17	18882881	18882881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	18882881	C	T	18882881	3	4	312	1	0	0	0	0	1	0	0	0	5646	739	26	2	1687	2	FAM83G	17	18882881	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10		18882881	62312329	37	19505											
BRD4	23476	hgsc.bcm.edu;ucsc.edu	37	19	15366320	15366320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	15366320	T	C	15366320	3	2	312	1	0	0	0	0	1	0	0	0	1506	1406	49	3	2312	3	BRD4	19	15366320	Missense_Mutation	SNP	T	TCGA-BP-4346-01A-01D-1366-10		15366320	43762663	38	19506											
CPAMD8	27151	hgsc.bcm.edu	37	19	17086920	17086920	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	G	17086920	C	G	17086920	3	3	312	1	0	0	0	0	1	0	0	0	3797	680	24	4	3965	4	CPAMD8	19	17086920	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10	1720600	17086920	42042063	39	19507											
SETD4	54093	hgsc.bcm.edu	37	21	37418057	37418057	+	Silent	SNP	C	C	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	37418057	C	T	37418057	2	4	312	1	0	0	0	0	0	0	0	1	14146	465	17	2		2	SETD4	21	37418057	Silent	SNP	C	TCGA-BP-4346-01A-01D-1366-10		37418057	10711838	40	19508											
MICAL3	57553	hgsc.bcm.edu;ucsc.edu	37	22	18382260	18382260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	C	18382260	A	C	18382260	3	2	312	1	0	0	0	0	1	0	0	0	9578	217	8	5	5947	5	MICAL3	22	18382260	Missense_Mutation	SNP	A	TCGA-BP-4346-01A-01D-1366-10		18382260	32922306	41	19509											
MORC2	22880	hgsc.bcm.edu	37	22	31328970	31328970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	31328970	C	A	31328970	3	1	312	1	0	0	0	0	1	0	0	0	9709	623	22	4	690	4	MORC2	22	31328970	Missense_Mutation	SNP	C	TCGA-BP-4346-01A-01D-1366-10	12946710	31328970	19975596	42	19510											
TLR8	51311	hgsc.bcm.edu;ucsc.edu	37	X	12937473	12937473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	12937473	G	A	12937473	3	1	312	1	0	0	0	0	1	0	0	0	15969	1174	41	2	320	2	TLR8	23	12937473	Missense_Mutation	SNP	G	TCGA-BP-4346-01A-01D-1366-10		12937473	142333087	43	19511											
RS1	6247	hgsc.bcm.edu	37	X	18660196	18660196	+	Silent	SNP	G	G	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	18660196	G	A	18660196	2	1	312	1	0	0	0	0	0	0	0	1	13706	1277	45	2		2	RS1	23	18660196	Silent	SNP	G	TCGA-BP-4346-01A-01D-1366-10	5722723	18660196	136610364	44	19512											
FGD1	2245	hgsc.bcm.edu;ucsc.edu	37	X	54475346	54475346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	A	54475346	G	A	54475346	3	1	312	1	0	0	0	0	1	0	0	0	5839	1116	39	1	568	1	FGD1	23	54475346	Missense_Mutation	SNP	G	TCGA-BP-4346-01A-01D-1366-10	35815150	54475346	100795214	45	19513											
XPNPEP2	7512	hgsc.bcm.edu	37	X	128886126	128886126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	20735253-1ba8-41c9-b4ab-682c1af79b9d	69e027cf-071a-4b3e-97de-c450555f38c1	T	128886126	G	T	128886126	3	4	312	1	0	0	0	0	1	0	0	0	17455	1275	44	4	860	4	XPNPEP2	23	128886126	Missense_Mutation	SNP	G	TCGA-BP-4346-01A-01D-1366-10	74410780	128886126	26384434	46	19514											
TAS1R2	80834	hgsc.bcm.edu;ucsc.edu	37	1	19166613	19166613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	19166613	C	T	19166613	3	4	313	1	0	0	0	0	1	0	0	0	15575	768	27	1	523	1	TAS1R2	1	19166613	Missense_Mutation	SNP	C	TCGA-BP-4347-01A-01D-1366-10		19166613	230084008	1	19515											
KIF17	57576	hgsc.bcm.edu	37	1	21042033	21042033	+	Missense_Mutation	SNP	T	T	C	rs35835983	bycluster;byfrequency;by1000genomes	TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	C	21042033	T	C	21042033	3	2	313	1	0	0	0	0	1	0	0	0	8286	1559	54	3	2814	3	KIF17	1	21042033	Missense_Mutation	SNP	T	TCGA-BP-4347-01A-01D-1366-10	1875420	21042033	228208588	2	19516											
GPR61	83873	hgsc.bcm.edu;ucsc.edu	37	1	110086265	110086265	+	Silent	SNP	T	T	C	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	C	110086265	T	C	110086265	2	2	313	1	0	0	0	0	0	0	0	1	6709	1828	64	3		3	GPR61	1	110086265	Silent	SNP	T	TCGA-BP-4347-01A-01D-1366-10	89044232	110086265	139164356	3	19517											
SOX13	9580	hgsc.bcm.edu	37	1	204092030	204092030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	204092030	G	A	204092030	3	1	313	1	0	0	0	0	1	0	0	0	14957	1116	39	1	1107	1	SOX13	1	204092030	Missense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10	94005765	204092030	45158591	4	19518											
PRKCE	5581	hgsc.bcm.edu	37	2	46203638	46203638	+	Silent	SNP	G	G	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	46203638	G	A	46203638	2	1	313	1	0	0	0	0	0	0	0	1	12521	1194	42	2		2	PRKCE	2	46203638	Silent	SNP	G	TCGA-BP-4347-01A-01D-1366-10		46203638	196995735	5	19519											
DYSF	8291	hgsc.bcm.edu;ucsc.edu	37	2	71838425	71838425	+	Silent	SNP	C	C	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	71838425	C	A	71838425	2	1	313	1	0	0	0	0	0	0	0	1	4861	903	32	4		4	DYSF	2	71838425	Silent	SNP	C	TCGA-BP-4347-01A-01D-1366-10	25634787	71838425	171360948	6	19520											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179665291	179665291	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	179665291	G	T	179665291	4	4	313	1	0	0	0	0	0	1	0	0	16747	1256	44	4	111010	4	TTN	2	179665291	Nonsense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10	107826866	179665291	63534082	7	19521											
PSMD1	5707	hgsc.bcm.edu;ucsc.edu	37	2	231937037	231937037	+	Silent	SNP	T	T	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	231937037	T	A	231937037	2	1	313	1	0	0	0	0	0	0	0	1	12702	1567	55	5		5	PSMD1	2	231937037	Silent	SNP	T	TCGA-BP-4347-01A-01D-1366-10	52271746	231937037	11262336	8	19522											
MFSD10	10227	hgsc.bcm.edu;ucsc.edu	37	4	2933580	2933580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	2933580	G	A	2933580	3	1	313	1	0	0	0	0	1	0	0	0	9535	1000	35	2	505	2	MFSD10	4	2933580	Missense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10		2933580	188220696	9	19523											
TBL2	26608	hgsc.bcm.edu;ucsc.edu	37	7	72988762	72988762	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	72988762	T	A	72988762	3	1	313	1	0	0	0	0	1	0	0	0	15654	1609	56	5	1155	5	TBL2	7	72988762	Missense_Mutation	SNP	T	TCGA-BP-4347-01A-01D-1366-10		72988762	86149901	10	19524											
ZNHIT1	10467	hgsc.bcm.edu	37	7	100867081	100867081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	100867081	G	T	100867081	3	4	313	1	0	0	0	0	1	0	0	0	18218	1116	39	4	415	4	ZNHIT1	7	100867081	Missense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10	27878319	100867081	58271582	11	19525											
TAS2R3	50831	hgsc.bcm.edu;ucsc.edu	37	7	141464727	141464727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	G	141464727	A	G	141464727	3	3	313	1	0	0	0	0	1	0	0	0	15584	362	13	3	771	3	TAS2R3	7	141464727	Missense_Mutation	SNP	A	TCGA-BP-4347-01A-01D-1366-10	40597646	141464727	17673936	12	19526											
UTP23	84294	hgsc.bcm.edu;ucsc.edu	37	8	117783987	117783987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	117783987	C	T	117783987	3	4	313	1	0	0	0	0	1	0	0	0	17112	838	29	2	666	2	UTP23	8	117783987	Missense_Mutation	SNP	C	TCGA-BP-4347-01A-01D-1366-10		117783987	28580035	13	19527											
KANK1	23189	hgsc.bcm.edu;ucsc.edu	37	9	712578	712578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	712578	C	A	712578	3	1	313	1	0	0	0	0	1	0	0	0	7983	709	25	4	1818	4	KANK1	9	712578	Missense_Mutation	SNP	C	TCGA-BP-4347-01A-01D-1366-10		712578	140500853	14	19528											
C9orf171	389799	hgsc.bcm.edu	37	9	135374869	135374869	+	Missense_Mutation	SNP	C	C	T	rs149346027	bycluster;byfrequency;by1000genomes	TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	135374869	C	T	135374869	3	4	313	1	0	0	0	0	1	0	0	0	2472	643	23	1	528	1	C9orf171	9	135374869	Missense_Mutation	SNP	C	TCGA-BP-4347-01A-01D-1366-10	134662291	135374869	5838562	15	19529											
PTER	9317	hgsc.bcm.edu;ucsc.edu	37	10	16547025	16547025	+	Silent	SNP	T	T	C	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	C	16547025	T	C	16547025	2	2	313	1	0	0	0	0	0	0	0	1	12749	1771	62	3		3	PTER	10	16547025	Silent	SNP	T	TCGA-BP-4347-01A-01D-1366-10		16547025	118987722	16	19530											
RRP12	23223	hgsc.bcm.edu;ucsc.edu	37	10	99148128	99148128	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	99148128	C	A	99148128	4	1	313	1	0	0	0	0	0	1	0	0	13699	864	30	4	3103	4	RRP12	10	99148128	Nonsense_Mutation	SNP	C	TCGA-BP-4347-01A-01D-1366-10	82601103	99148128	36386619	17	19531											
CLRN3	119467	hgsc.bcm.edu;ucsc.edu	37	10	129690978	129690978	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	129690978	A	T	129690978	3	4	313	1	0	0	0	0	1	0	0	0	3561	101	4	5	621	5	CLRN3	10	129690978	Missense_Mutation	SNP	A	TCGA-BP-4347-01A-01D-1366-10	30542850	129690978	5843769	18	19532											
NARS2	79731	hgsc.bcm.edu;ucsc.edu	37	11	78152161	78152161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	78152161	G	A	78152161	3	1	313	1	0	0	0	0	1	0	0	0	10178	1059	37	1	176	1	NARS2	11	78152161	Missense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10		78152161	56854355	19	19533											
NAB2	4665	hgsc.bcm.edu;ucsc.edu	37	12	57485620	57485620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	C	57485620	T	C	57485620	3	2	313	1	0	0	0	0	1	0	0	0	10139	1435	50	3	802	3	NAB2	12	57485620	Missense_Mutation	SNP	T	TCGA-BP-4347-01A-01D-1366-10		57485620	76366275	20	19534											
SART3	9733	hgsc.bcm.edu;ucsc.edu	37	12	108929189	108929189	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	C	108929189	G	C	108929189	3	2	313	1	0	0	0	0	1	0	0	0	13860	1261	44	4	1421	4	SART3	12	108929189	Missense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10	51443569	108929189	24922706	21	19535											
MIPEP	4285	hgsc.bcm.edu	37	13	24411774	24411774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	24411774	G	T	24411774	3	4	313	1	0	0	0	0	1	0	0	0	9599	1000	35	4	709	4	MIPEP	13	24411774	Missense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10		24411774	90758104	22	19536											
RNF113B	140432	hgsc.bcm.edu	37	13	98828965	98828965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	98828965	G	T	98828965	3	4	313	1	0	0	0	0	1	0	0	0	13441	1232	43	4	450	4	RNF113B	13	98828965	Missense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10	74417191	98828965	16340913	23	19537											
SCFD1	23256	hgsc.bcm.edu;ucsc.edu	37	14	31171516	31171516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	C	31171516	A	C	31171516	3	2	313	1	0	0	0	0	1	0	0	0	13902	98	4	5	1491	5	SCFD1	14	31171516	Missense_Mutation	SNP	A	TCGA-BP-4347-01A-01D-1366-10		31171516	76178024	24	19538											
GNB5	10681	hgsc.bcm.edu;ucsc.edu	37	15	52433455	52433455	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	G	52433455	T	G	52433455	3	3	313	1	0	0	0	0	1	0	0	0	6528	1609	56	5	706	5	GNB5	15	52433455	Missense_Mutation	SNP	T	TCGA-BP-4347-01A-01D-1366-10		52433455	50097937	25	19539											
UBN1	29855	hgsc.bcm.edu	37	16	4924285	4924285	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	G	4924285	C	G	4924285	4	3	313	1	0	0	0	0	0	1	0	0	16904	838	29	4	1928	4	UBN1	16	4924285	Nonsense_Mutation	SNP	C	TCGA-BP-4347-01A-01D-1366-10		4924285	85430468	26	19540											
CNOT1	23019	hgsc.bcm.edu;ucsc.edu	37	16	58585658	58585658	+	Silent	SNP	A	A	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	58585658	A	T	58585658	2	4	313	1	0	0	0	0	0	0	0	1	3619	175	7	5		5	CNOT1	16	58585658	Silent	SNP	A	TCGA-BP-4347-01A-01D-1366-10	53661373	58585658	31769095	27	19541											
GAN	8139	hgsc.bcm.edu;ucsc.edu	37	16	81411067	81411067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	G	81411067	T	G	81411067	3	3	313	1	0	0	0	0	1	0	0	0	6239	1580	55	5	1702	5	GAN	16	81411067	Missense_Mutation	SNP	T	TCGA-BP-4347-01A-01D-1366-10	22825409	81411067	8943686	28	19542											
ZC3H18	124245	hgsc.bcm.edu;ucsc.edu	37	16	88644135	88644135	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	88644135	G	A	88644135	5	1	313	1	0	0	0	0	0	0	1	0	17580	1159	40	1	606	1	ZC3H18	16	88644135	Splice_Site	SNP	G	TCGA-BP-4347-01A-01D-1366-10	7233068	88644135	1710618	29	19543											
POLI	11201	hgsc.bcm.edu;ucsc.edu	37	18	51804217	51804217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	G	51804217	A	G	51804217	3	3	313	1	0	0	0	0	1	0	0	0	12210	101	4	3	565	3	POLI	18	51804217	Missense_Mutation	SNP	A	TCGA-BP-4347-01A-01D-1366-10		51804217	26273031	30	19544											
MAST1	22983	hgsc.bcm.edu	37	19	12975920	12975920	+	Silent	SNP	G	G	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	12975920	G	T	12975920	2	4	313	1	0	0	0	0	0	0	0	1	9331	1190	42	4		4	MAST1	19	12975920	Silent	SNP	G	TCGA-BP-4347-01A-01D-1366-10		12975920	46153063	31	19545											
ZNF569	148266	hgsc.bcm.edu	37	19	37905300	37905300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	C	37905300	T	C	37905300	3	2	313	1	0	0	0	0	1	0	0	0	18012	1551	54	3	1804	3	ZNF569	19	37905300	Missense_Mutation	SNP	T	TCGA-BP-4347-01A-01D-1366-10	24929380	37905300	21223683	32	19546											
HNRNPUL1	11100	hgsc.bcm.edu;ucsc.edu	37	19	41808629	41808629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	41808629	C	A	41808629	3	1	313	1	0	0	0	0	1	0	0	0	7281	711	25	4	1793	4	HNRNPUL1	19	41808629	Missense_Mutation	SNP	C	TCGA-BP-4347-01A-01D-1366-10	3903329	41808629	17320354	33	19547											
C19orf76	0	hgsc.bcm.edu	37	19	50193437	50193437	+	Missense_Mutation	SNP	C	C	A	rs45613034	bycluster;byfrequency;by1000genomes	TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	50193437	C	A	50193437	3	1	313	1	0	0	0	0	1	0	0	0	1952	768	27	4	155	4	C19orf76	19	50193437	Missense_Mutation	SNP	C	TCGA-BP-4347-01A-01D-1366-10	8384808	50193437	8935546	34	19548											
ZNF274	10782	hgsc.bcm.edu	37	19	58718359	58718360	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	58718360	-	A	58718359	7	5	313	1	0	1	1	0	0	0	0	0	17821	1175	41	0	543	0	ZNF274	19	58718359	Frame_Shift_Ins	INS	-	TCGA-BP-4347-01A-01D-1366-10	8524922	58718359	410624	35	19549											
C22orf30	0	hgsc.bcm.edu;ucsc.edu	37	22	32108910	32108910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	32108910	G	A	32108910	3	1	313	1	0	0	0	0	1	0	0	0	2144	1144	40	1	1564	1	C22orf30	22	32108910	Missense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10		32108910	19195656	36	19550											
CBX6	23466	hgsc.bcm.edu;ucsc.edu	37	22	39267730	39267730	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	T	39267730	A	T	39267730	3	4	313	1	0	0	0	0	1	0	0	0	2724	188	7	5	1104	5	CBX6	22	39267730	Missense_Mutation	SNP	A	TCGA-BP-4347-01A-01D-1366-10	7158820	39267730	12036836	37	19551											
IL1RAPL2	26280	hgsc.bcm.edu;ucsc.edu	37	X	103903657	103903657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	103903657	G	A	103903657	3	1	313	1	0	0	0	0	1	0	0	0	7669	1348	47	2	65	2	IL1RAPL2	23	103903657	Missense_Mutation	SNP	G	TCGA-BP-4347-01A-01D-1366-10		103903657	51366903	38	19552											
L1CAM	3897	hgsc.bcm.edu	37	X	153131185	153131185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4347-01A-01D-1366-10	TCGA-BP-4347-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	249697ef-19f1-4d5e-8182-1eb1b5c38ec1	e453d958-081b-4680-a2ec-1e14aa549c08	A	153131185	C	A	153131185	3	1	313	1	0	0	0	0	1	0	0	0	8595	507	18	4	1292	4	L1CAM	23	153131185	Missense_Mutation	SNP	C	TCGA-BP-4347-01A-01D-1366-10	49227528	153131185	2139375	39	19553											
AGMAT	79814	hgsc.bcm.edu;ucsc.edu	37	1	15905364	15905364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	15905364	T	C	15905364	3	2	314	1	0	0	0	0	1	0	0	0	385	1725	60	3	364	3	AGMAT	1	15905364	Missense_Mutation	SNP	T	TCGA-BP-4349-01A-01D-1366-10		15905364	233345257	1	19554											
TMEM54	113452	hgsc.bcm.edu	37	1	33360429	33360429	+	Missense_Mutation	SNP	T	T	A	rs147308790		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	A	33360429	T	A	33360429	3	1	314	1	0	0	0	0	1	0	0	0	16192	1580	55	5	26	5	TMEM54	1	33360429	Missense_Mutation	SNP	T	TCGA-BP-4349-01A-01D-1366-10	17455065	33360429	215890192	2	19555	248	2									
TMEM54	113452	hgsc.bcm.edu	37	1	33360433	33360433	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	-	33360433	G	-	33360433	7	5	314	1	0	1	0	1	0	0	0	0	16192	1311	46	0	30	0	TMEM54	1	33360433	Frame_Shift_Del	DEL	G	TCGA-BP-4349-01A-01D-1366-10	4	33360433	215890188	3	19556	248	2									
SELP	6403	hgsc.bcm.edu;ucsc.edu	37	1	169588410	169588410	+	Silent	SNP	G	G	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	169588410	G	T	169588410	2	4	314	1	0	0	0	0	0	0	0	1	14032	929	33	4		4	SELP	1	169588410	Silent	SNP	G	TCGA-BP-4349-01A-01D-1366-10	136227977	169588410	79662211	4	19557											
PAPOLG	64895	hgsc.bcm.edu;ucsc.edu	37	2	61024285	61024285	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	A	61024285	T	A	61024285	3	1	314	1	0	0	0	0	1	0	0	0	11438	1609	56	5	2287	5	PAPOLG	2	61024285	Missense_Mutation	SNP	T	TCGA-BP-4349-01A-01D-1366-10		61024285	182175088	5	19558											
CNTNAP5	129684	hgsc.bcm.edu;ucsc.edu	37	2	125261996	125261996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	125261996	G	T	125261996	3	4	314	1	0	0	0	0	1	0	0	0	3652	1058	37	4	1217	4	CNTNAP5	2	125261996	Missense_Mutation	SNP	G	TCGA-BP-4349-01A-01D-1366-10	64237711	125261996	117937377	6	19559											
ANO10	55129	hgsc.bcm.edu;ucsc.edu	37	3	43618256	43618256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	43618256	T	C	43618256	3	2	314	1	0	0	0	0	1	0	0	0	696	1464	51	3	924	3	ANO10	3	43618256	Missense_Mutation	SNP	T	TCGA-BP-4349-01A-01D-1366-10		43618256	154404174	7	19560											
FAM55C	0	hgsc.bcm.edu;ucsc.edu	37	3	101540501	101540501	+	Silent	SNP	G	G	A	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	A	101540501	G	A	101540501	2	1	314	1	0	0	0	0	0	0	0	1	5593	1165	41	2		2	FAM55C	3	101540501	Silent	SNP	G	TCGA-BP-4349-01A-01D-1366-10	57922245	101540501	96481929	8	19561											
ZBTB20	26137	hgsc.bcm.edu	37	3	114058034	114058034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	114058034	C	T	114058034	3	4	314	1	0	0	0	0	1	0	0	0	17541	739	26	2	185	2	ZBTB20	3	114058034	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10	12517533	114058034	83964396	9	19562											
ISY1	57461	hgsc.bcm.edu	37	3	128875499	128875499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	128875499	T	C	128875499	3	2	314	1	0	0	0	0	1	0	0	0	7873	1841	64	3	721	3	ISY1	3	128875499	Missense_Mutation	SNP	T	TCGA-BP-4349-01A-01D-1366-10	14817465	128875499	69146931	10	19563											
AFF1	4299	hgsc.bcm.edu;ucsc.edu	37	4	88029314	88029314	+	Silent	SNP	T	T	C	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	88029314	T	C	88029314	2	2	314	1	0	0	0	0	0	0	0	1	356	1538	54	3		3	AFF1	4	88029314	Silent	SNP	T	TCGA-BP-4349-01A-01D-1366-10		88029314	103124962	11	19564											
ANP32C	23520	hgsc.bcm.edu	37	4	165118362	165118362	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	A	165118362	C	A	165118362	4	1	314	1	0	0	0	0	0	1	0	0	707	864	30	4	205	4	ANP32C	4	165118362	Nonsense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10	77089048	165118362	26035914	12	19565											
THBS4	7060	hgsc.bcm.edu	37	5	79375847	79375847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	A	79375847	C	A	79375847	3	1	314	1	0	0	0	0	1	0	0	0	15868	477	17	4	2709	4	THBS4	5	79375847	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10		79375847	101539413	13	19566											
TTC37	9652	hgsc.bcm.edu;ucsc.edu	37	5	94852697	94852697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	94852697	A	C	94852697	3	2	314	1	0	0	0	0	1	0	0	0	16717	362	13	5	2423	5	TTC37	5	94852697	Missense_Mutation	SNP	A	TCGA-BP-4349-01A-01D-1366-10	15476850	94852697	86062563	14	19567											
TTLL2	83887	hgsc.bcm.edu	37	6	167753863	167753863	+	Silent	SNP	T	T	C	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	167753863	T	C	167753863	2	2	314	1	0	0	0	0	0	0	0	1	16739	1838	64	3		3	TTLL2	6	167753863	Silent	SNP	T	TCGA-BP-4349-01A-01D-1366-10		167753863	3361204	15	19568											
RADIL	55698	hgsc.bcm.edu	37	7	4843307	4843307	+	Missense_Mutation	SNP	T	T	C	rs187128776	by1000genomes	TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	4843307	T	C	4843307	3	2	314	1	0	0	0	0	1	0	0	0	13010	1725	60	3	878	3	RADIL	7	4843307	Missense_Mutation	SNP	T	TCGA-BP-4349-01A-01D-1366-10		4843307	154295356	16	19569											
SCIN	85477	hgsc.bcm.edu;ucsc.edu	37	7	12620697	12620697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	A	12620697	G	A	12620697	3	1	314	1	0	0	0	0	1	0	0	0	13918	1203	42	2	377	2	SCIN	7	12620697	Missense_Mutation	SNP	G	TCGA-BP-4349-01A-01D-1366-10	7777390	12620697	146517966	17	19570											
COBL	23242	hgsc.bcm.edu	37	7	51095591	51095591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	51095591	C	T	51095591	3	4	314	1	0	0	0	0	1	0	0	0	3655	864	30	2	599	2	COBL	7	51095591	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10	38474894	51095591	108043072	18	19571											
CDHR3	222256	hgsc.bcm.edu;ucsc.edu	37	7	105672876	105672876	+	Silent	SNP	A	A	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	105672876	A	T	105672876	2	4	314	1	0	0	0	0	0	0	0	1	3122	291	11	5		5	CDHR3	7	105672876	Silent	SNP	A	TCGA-BP-4349-01A-01D-1366-10	54577285	105672876	53465787	19	19572											
SECISBP2	79048	hgsc.bcm.edu;ucsc.edu	37	9	91964776	91964776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	G	91964776	C	G	91964776	3	3	314	1	0	0	0	0	1	0	0	0	14019	477	17	4	1874	4	SECISBP2	9	91964776	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10		91964776	49248655	20	19573											
FBP1	2203	hgsc.bcm.edu;ucsc.edu	37	9	97369216	97369216	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	97369216	A	T	97369216	3	4	314	1	0	0	0	0	1	0	0	0	5712	11	1	5	442	5	FBP1	9	97369216	Missense_Mutation	SNP	A	TCGA-BP-4349-01A-01D-1366-10	5404440	97369216	43844215	21	19574											
JMJD1C	221037	hgsc.bcm.edu;ucsc.edu	37	10	64967020	64967020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	64967020	C	T	64967020	3	4	314	1	0	0	0	0	1	0	0	0	7957	565	20	2	3281	2	JMJD1C	10	64967020	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10		64967020	70567727	22	19575											
DDB1	1642	hgsc.bcm.edu;ucsc.edu	37	11	61097462	61097462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	61097462	C	T	61097462	3	4	314	1	0	0	0	0	1	0	0	0	4325	826	29	2	3227	2	DDB1	11	61097462	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10		61097462	73909054	23	19576											
SIDT2	51092	hgsc.bcm.edu;ucsc.edu	37	11	117058118	117058118	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	G	117058118	C	G	117058118	3	3	314	1	0	0	0	0	1	0	0	0	14316	913	32	4	1082	4	SIDT2	11	117058118	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10	55960656	117058118	17948398	24	19577											
TREH	11181	hgsc.bcm.edu;ucsc.edu	37	11	118531934	118531934	+	Silent	SNP	G	G	C	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	118531934	G	C	118531934	2	2	314	1	0	0	0	0	0	0	0	1	16481	929	33	4		4	TREH	11	118531934	Silent	SNP	G	TCGA-BP-4349-01A-01D-1366-10	1473816	118531934	16474582	25	19578											
IGSF9B	22997	hgsc.bcm.edu;ucsc.edu	37	11	133807740	133807740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	133807740	C	T	133807740	3	4	314	1	0	0	0	0	1	0	0	0	7613	864	30	2	3587	2	IGSF9B	11	133807740	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10	15275806	133807740	1198776	26	19579											
ITPR2	3709	hgsc.bcm.edu	37	12	26775308	26775308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	26775308	A	C	26775308	3	2	314	1	0	0	0	0	1	0	0	0	7928	214	8	5	5084	5	ITPR2	12	26775308	Missense_Mutation	SNP	A	TCGA-BP-4349-01A-01D-1366-10		26775308	107076587	27	19580											
FAR2	55711	hgsc.bcm.edu;ucsc.edu	37	12	29469894	29469894	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	G	29469894	C	G	29469894	3	3	314	1	0	0	0	0	1	0	0	0	5682	739	26	4	1106	4	FAR2	12	29469894	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10	2694586	29469894	104382001	28	19581											
SLC6A15	55117	hgsc.bcm.edu	37	12	85257319	85257319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	G	85257319	A	G	85257319	3	3	314	1	0	0	0	0	1	0	0	0	14691	159	6	3	483	3	SLC6A15	12	85257319	Missense_Mutation	SNP	A	TCGA-BP-4349-01A-01D-1366-10	55787425	85257319	48594576	29	19582											
SPTB	6710	hgsc.bcm.edu	37	14	65264450	65264450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	65264450	G	T	65264450	3	4	314	1	0	0	0	0	1	0	0	0	15130	1368	48	4	5984	4	SPTB	14	65264450	Missense_Mutation	SNP	G	TCGA-BP-4349-01A-01D-1366-10		65264450	42085090	30	19583											
PROX2	283571	hgsc.bcm.edu	37	14	75329730	75329730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	75329730	C	T	75329730	3	4	314	1	0	0	0	0	1	0	0	0	12571	893	31	1	986	1	PROX2	14	75329730	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10	10065280	75329730	32019810	31	19584											
MESDC2	23184	hgsc.bcm.edu;ucsc.edu	37	15	81274514	81274514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	81274514	C	T	81274514	3	4	314	1	0	0	0	0	1	0	0	0	9488	826	29	2	489	2	MESDC2	15	81274514	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10		81274514	21256878	32	19585											
CIITA	4261	hgsc.bcm.edu	37	16	11001467	11001467	+	Silent	SNP	G	G	A	rs139717340	by1000genomes;alternate_allele	TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	A	11001467	G	A	11001467	2	1	314	1	0	0	0	0	0	0	0	1	3430	1335	47	2		2	CIITA	16	11001467	Silent	SNP	G	TCGA-BP-4349-01A-01D-1366-10		11001467	79353286	33	19586											
MYH11	4629	hgsc.bcm.edu;ucsc.edu	37	16	15931773	15931773	+	Silent	SNP	G	G	A	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	A	15931773	G	A	15931773	2	1	314	1	0	0	0	0	0	0	0	1	10038	962	34	2		2	MYH11	16	15931773	Silent	SNP	G	TCGA-BP-4349-01A-01D-1366-10	4930306	15931773	74422980	34	19587											
GRB7	2886	hgsc.bcm.edu	37	17	37898909	37898909	+	Silent	SNP	A	A	C	rs36079893	bycluster;byfrequency;by1000genomes	TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	C	37898909	A	C	37898909	2	2	314	1	0	0	0	0	0	0	0	1	6766	117	5	5		5	GRB7	17	37898909	Silent	SNP	A	TCGA-BP-4349-01A-01D-1366-10		37898909	43296301	35	19588											
MYBPC2	4606	hgsc.bcm.edu;ucsc.edu	37	19	50963349	50963349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	A	50963349	C	A	50963349	3	1	314	1	0	0	0	0	1	0	0	0	10019	535	19	4	2938	4	MYBPC2	19	50963349	Missense_Mutation	SNP	C	TCGA-BP-4349-01A-01D-1366-10		50963349	8165634	36	19589											
MYO18B	84700	hgsc.bcm.edu;ucsc.edu	37	22	26291196	26291196	+	Silent	SNP	C	C	T	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	T	26291196	C	T	26291196	2	4	314	1	0	0	0	0	0	0	0	1	10073	776	27	1		1	MYO18B	22	26291196	Silent	SNP	C	TCGA-BP-4349-01A-01D-1366-10		26291196	25013370	37	19590											
ARSF	416	hgsc.bcm.edu	37	X	3007535	3007535	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-4349-01A-01D-1366-10	TCGA-BP-4349-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	18e1c19a-0e28-4f55-8119-ceae36f5454f	85dfe563-5a82-421d-a595-64c336324e66	G	3007535	A	G	3007535	5	3	314	1	0	0	0	0	0	0	1	0	991	202	7	3	851	3	ARSF	23	3007535	Splice_Site	SNP	A	TCGA-BP-4349-01A-01D-1366-10		3007535	152263025	38	19591											
VHL	7428	hgsc.bcm.edu	37	3	10183871	10183871	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4349-01A-01W-1362-10	TCGA-BP-4349-11A-01W-1362-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	f40c15b0-29c0-4b3d-9cd0-3d98e36bedec	9776512e-1277-4973-9831-bf6bb4124639	C	10183871	G	C	10183871	3	2	315	1	0	0	0	0	1	0	0	0	17174	1014	35	4	342	4	VHL	3	10183871	Missense_Mutation	SNP	G	TCGA-BP-4349-01A-01W-1362-10		10183871	187838559	1	19592											
ISG15	9636	hgsc.bcm.edu	37	1	949654	949654	+	Silent	SNP	A	A	G	rs8997	bycluster;byfrequency;by1000genomes	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	949654	A	G	949654	2	3	316	1	0	0	0	0	0	0	0	1	7860	378	14	3		3	ISG15	1	949654	Silent	SNP	A	TCGA-BP-4351-01A-01D-1366-10		949654	248300967	1	19593											
CLCN6	1185	hgsc.bcm.edu;ucsc.edu	37	1	11894064	11894064	+	Silent	SNP	T	T	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	11894064	T	C	11894064	2	2	316	1	0	0	0	0	0	0	0	1	3469	1712	60	3		3	CLCN6	1	11894064	Silent	SNP	T	TCGA-BP-4351-01A-01D-1366-10	10944410	11894064	237356557	2	19594											
LRP8	7804	hgsc.bcm.edu	37	1	53792606	53792606	+	Silent	SNP	G	G	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	53792606	G	T	53792606	2	4	316	1	0	0	0	0	0	0	0	1	8970	987	35	4		4	LRP8	1	53792606	Silent	SNP	G	TCGA-BP-4351-01A-01D-1366-10	41898542	53792606	195458015	3	19595											
NEGR1	257194	hgsc.bcm.edu;ucsc.edu	37	1	71873192	71873192	+	Silent	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	71873192	G	A	71873192	2	1	316	1	0	0	0	0	0	0	0	1	10324	1256	44	2		2	NEGR1	1	71873192	Silent	SNP	G	TCGA-BP-4351-01A-01D-1366-10	18080586	71873192	177377429	4	19596											
LRRC8B	23507	hgsc.bcm.edu;ucsc.edu	37	1	90049857	90049857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	90049857	T	C	90049857	3	2	316	1	0	0	0	0	1	0	0	0	9029	1551	54	3	1650	3	LRRC8B	1	90049857	Missense_Mutation	SNP	T	TCGA-BP-4351-01A-01D-1366-10	18176665	90049857	159200764	5	19597											
OR6K2	81448	hgsc.bcm.edu;ucsc.edu	37	1	158669955	158669955	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	158669955	G	C	158669955	3	2	316	1	0	0	0	0	1	0	0	0	11209	942	33	4	490	4	OR6K2	1	158669955	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	68620098	158669955	90580666	6	19598											
CRB1	23418	hgsc.bcm.edu;ucsc.edu	37	1	197390461	197390461	+	Silent	SNP	G	G	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	197390461	G	C	197390461	2	2	316	1	0	0	0	0	0	0	0	1	3850	1277	45	4		4	CRB1	1	197390461	Silent	SNP	G	TCGA-BP-4351-01A-01D-1366-10	38720506	197390461	51860160	7	19599											
MYT1L	23040	hgsc.bcm.edu;ucsc.edu	37	2	1926319	1926319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	1926319	G	A	1926319	3	1	316	1	0	0	0	0	1	0	0	0	10114	1086	38	1	2396	1	MYT1L	2	1926319	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10		1926319	241273054	8	19600											
HNRPLL	92906	hgsc.bcm.edu	37	2	38800465	38800465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	38800465	T	C	38800465	3	2	316	1	0	0	0	0	1	0	0	0	7284	1464	51	3	673	3	HNRPLL	2	38800465	Missense_Mutation	SNP	T	TCGA-BP-4351-01A-01D-1366-10	36874146	38800465	204398908	9	19601											
XPO1	7514	hgsc.bcm.edu;ucsc.edu	37	2	61706043	61706043	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	61706043	C	G	61706043	3	3	316	1	0	0	0	0	1	0	0	0	17457	652	23	4	91	4	XPO1	2	61706043	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10	22905578	61706043	181493330	10	19602											
GMCL1	64395	hgsc.bcm.edu;ucsc.edu	37	2	70096896	70096896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	70096896	G	T	70096896	3	4	316	1	0	0	0	0	1	0	0	0	6492	1377	48	4	1310	4	GMCL1	2	70096896	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	8390853	70096896	173102477	11	19603											
EDAR	10913	hgsc.bcm.edu;ucsc.edu	37	2	109513432	109513432	+	Silent	SNP	G	G	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	109513432	G	T	109513432	2	4	316	1	0	0	0	0	0	0	0	1	4907	987	35	4		4	EDAR	2	109513432	Silent	SNP	G	TCGA-BP-4351-01A-01D-1366-10	39416536	109513432	133685941	12	19604											
PASK	23178	hgsc.bcm.edu	37	2	242047620	242047620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	242047620	A	T	242047620	3	4	316	1	0	0	0	0	1	0	0	0	11479	159	6	5	354	5	PASK	2	242047620	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10	132534188	242047620	1151753	13	19605											
ZNF619	285267	hgsc.bcm.edu;ucsc.edu	37	3	40529519	40529519	+	Silent	SNP	C	C	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	40529519	C	G	40529519	2	3	316	1	0	0	0	0	0	0	0	1	18055	610	22	4		4	ZNF619	3	40529519	Silent	SNP	C	TCGA-BP-4351-01A-01D-1366-10		40529519	157492911	14	19606											
PDS5A	23244	hgsc.bcm.edu;ucsc.edu	37	4	39850476	39850476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	39850476	C	T	39850476	3	4	316	1	0	0	0	0	1	0	0	0	11698	835	29	2	703	2	PDS5A	4	39850476	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10		39850476	151303800	15	19607											
PCDHB3	56132	hgsc.bcm.edu;ucsc.edu	37	5	140481267	140481267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	140481267	C	A	140481267	3	1	316	1	0	0	0	0	1	0	0	0	11550	652	23	4	1036	4	PCDHB3	5	140481267	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10		140481267	40433993	16	19608											
RNF44	22838	hgsc.bcm.edu;ucsc.edu	37	5	175957205	175957206	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	-	175957206	TG	-	175957205	7	5	316	1	0	1	0	1	0	0	0	0	13509	1451	51	0	514	0	RNF44	5	175957205	Frame_Shift_Del	DEL	TG	TCGA-BP-4351-01A-01D-1366-10	35475938	175957205	4958055	17	19609											
GRM4	2914	hgsc.bcm.edu	37	6	34059775	34059775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	34059775	C	A	34059775	3	1	316	1	0	0	0	0	1	0	0	0	6806	680	24	4	2153	4	GRM4	6	34059775	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10		34059775	137055292	18	19610											
SENP6	26054	hgsc.bcm.edu;ucsc.edu	37	6	76388338	76388338	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	76388338	G	C	76388338	3	2	316	1	0	0	0	0	1	0	0	0	14063	943	33	4	1946	4	SENP6	6	76388338	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	42328563	76388338	94726729	19	19611											
C6orf167	0	hgsc.bcm.edu	37	6	97629924	97629924	+	Missense_Mutation	SNP	G	G	C	rs189009132	by1000genomes	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	97629924	G	C	97629924	3	2	316	1	0	0	0	0	1	0	0	0	2344	1029	36	4	1531	4	C6orf167	6	97629924	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	21241586	97629924	73485143	20	19612											
OGDH	4967	hgsc.bcm.edu	37	7	44747514	44747514	+	Silent	SNP	C	C	T	rs61756583	bycluster;byfrequency;by1000genomes	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	44747514	C	T	44747514	2	4	316	1	0	0	0	0	0	0	0	1	10846	639	23	1		1	OGDH	7	44747514	Silent	SNP	C	TCGA-BP-4351-01A-01D-1366-10		44747514	114391149	21	19613											
AGK	55750	hgsc.bcm.edu;ucsc.edu	37	7	141255279	141255279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	141255279	T	C	141255279	3	2	316	1	0	0	0	0	1	0	0	0	383	1609	56	3	15	3	AGK	7	141255279	Missense_Mutation	SNP	T	TCGA-BP-4351-01A-01D-1366-10	96507765	141255279	17883384	22	19614	249	2									
AGK	55750	hgsc.bcm.edu;ucsc.edu	37	7	141255283	141255283	+	Missense_Mutation	SNP	A	A	T	rs148294392	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	141255283	A	T	141255283	3	4	316	1	0	0	0	0	1	0	0	0	383	14	1	5	19	5	AGK	7	141255283	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10	4	141255283	17883380	23	19615	249	2									
CSMD1	64478	hgsc.bcm.edu;ucsc.edu	37	8	3046472	3046472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	3046472	C	A	3046472	3	1	316	1	0	0	0	0	1	0	0	0	3946	796	28	4	5378	4	CSMD1	8	3046472	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10		3046472	143317550	24	19616											
PCMTD1	115294	hgsc.bcm.edu;ucsc.edu	37	8	52773607	52773607	+	Silent	SNP	C	C	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	52773607	C	A	52773607	2	1	316	1	0	0	0	0	0	0	0	1	11593	871	31	4		4	PCMTD1	8	52773607	Silent	SNP	C	TCGA-BP-4351-01A-01D-1366-10	49727135	52773607	93590415	25	19617											
C9orf116	138162	hgsc.bcm.edu;ucsc.edu	37	9	138387377	138387377	+	Silent	SNP	G	G	A	rs140869229		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	138387377	G	A	138387377	2	1	316	1	0	0	0	0	0	0	0	1	2452	991	35	2		2	C9orf116	9	138387377	Silent	SNP	G	TCGA-BP-4351-01A-01D-1366-10		138387377	2826054	26	19618											
PTEN	5728	hgsc.bcm.edu	37	10	89692891	89692891	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	89692891	A	C	89692891	3	2	316	1	0	0	0	0	1	0	0	0	12748	69	3	5	393	5	PTEN	10	89692891	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10		89692891	45841856	27	19619											
COX15	1355	hgsc.bcm.edu;ucsc.edu	37	10	101478155	101478155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	101478155	A	C	101478155	3	2	316	1	0	0	0	0	1	0	0	0	3766	188	7	5	379	5	COX15	10	101478155	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10	11785264	101478155	34056592	28	19620											
PLEKHA1	59338	hgsc.bcm.edu;ucsc.edu	37	10	124189325	124189325	+	Silent	SNP	T	T	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	124189325	T	A	124189325	2	1	316	1	0	0	0	0	0	0	0	1	12062	1538	54	5		5	PLEKHA1	10	124189325	Silent	SNP	T	TCGA-BP-4351-01A-01D-1366-10	22711170	124189325	11345422	29	19621											
PTPRJ	5795	hgsc.bcm.edu;ucsc.edu	37	11	48171013	48171013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	48171013	A	C	48171013	3	2	316	1	0	0	0	0	1	0	0	0	12817	101	4	5	3085	5	PTPRJ	11	48171013	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10		48171013	86835503	30	19622											
DAGLA	747	hgsc.bcm.edu	37	11	61505673	61505673	+	Silent	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	61505673	G	A	61505673	2	1	316	1	0	0	0	0	0	0	0	1	4228	962	34	2		2	DAGLA	11	61505673	Silent	SNP	G	TCGA-BP-4351-01A-01D-1366-10	13334660	61505673	73500843	31	19623											
ARAP1	116985	hgsc.bcm.edu	37	11	72418405	72418405	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	72418405	G	T	72418405	4	4	316	1	0	0	0	0	0	1	0	0	838	1294	45	4	2910	4	ARAP1	11	72418405	Nonsense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	10912732	72418405	62588111	32	19624											
WNT11	7481	hgsc.bcm.edu	37	11	75898207	75898207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	75898207	C	A	75898207	3	1	316	1	0	0	0	0	1	0	0	0	17396	913	32	4	101	4	WNT11	11	75898207	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10	3479802	75898207	59108309	33	19625											
GRIA4	2893	hgsc.bcm.edu;ucsc.edu	37	11	105795320	105795320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	105795320	G	A	105795320	3	1	316	1	0	0	0	0	1	0	0	0	6777	1377	48	2	1751	2	GRIA4	11	105795320	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	29897113	105795320	29211196	34	19626											
APOC3	345	hgsc.bcm.edu	37	11	116703546	116703546	+	Silent	SNP	T	T	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	116703546	T	C	116703546	2	2	316	1	0	0	0	0	0	0	0	1	799	1567	55	3		3	APOC3	11	116703546	Silent	SNP	T	TCGA-BP-4351-01A-01D-1366-10	10908226	116703546	18302970	35	19627											
ROBO4	54538	hgsc.bcm.edu	37	11	124763776	124763776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	124763776	G	A	124763776	3	1	316	1	0	0	0	0	1	0	0	0	13529	971	34	2	1579	2	ROBO4	11	124763776	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	8060230	124763776	10242740	36	19628											
FGF6	2251	hgsc.bcm.edu	37	12	4553398	4553398	+	Silent	SNP	C	C	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	4553398	C	G	4553398	2	3	316	1	0	0	0	0	0	0	0	1	5863	697	25	4		4	FGF6	12	4553398	Silent	SNP	C	TCGA-BP-4351-01A-01D-1366-10		4553398	129298497	37	19629											
TAS2R9	50835	hgsc.bcm.edu;ucsc.edu	37	12	10962229	10962229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	10962229	T	A	10962229	3	1	316	1	0	0	0	0	1	0	0	0	15600	1493	52	5	496	5	TAS2R9	12	10962229	Missense_Mutation	SNP	T	TCGA-BP-4351-01A-01D-1366-10	6408831	10962229	122889666	38	19630											
STAT6	6778	hgsc.bcm.edu;ucsc.edu	37	12	57501489	57501489	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	57501489	A	C	57501489	3	2	316	1	0	0	0	0	1	0	0	0	15282	69	3	5	2469	5	STAT6	12	57501489	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10	46539260	57501489	76350406	39	19631											
NUAK1	9891	hgsc.bcm.edu	37	12	106461281	106461281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	106461281	A	G	106461281	3	3	316	1	0	0	0	0	1	0	0	0	10719	14	1	3	704	3	NUAK1	12	106461281	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10	48959792	106461281	27390614	40	19632											
NALCN	259232	hgsc.bcm.edu;ucsc.edu	37	13	101944628	101944628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	101944628	G	A	101944628	3	1	316	1	0	0	0	0	1	0	0	0	10155	1087	38	1	4475	1	NALCN	13	101944628	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10		101944628	13225250	41	19633											
BNC1	646	hgsc.bcm.edu;ucsc.edu	37	15	83926300	83926300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	83926300	A	T	83926300	3	4	316	1	0	0	0	0	1	0	0	0	1474	391	14	5	109	5	BNC1	15	83926300	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10		83926300	18605092	42	19634											
GLYR1	84656	hgsc.bcm.edu;ucsc.edu	37	16	4855240	4855240	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	4855240	G	C	4855240	3	2	316	1	0	0	0	0	1	0	0	0	6490	1020	36	4	6	4	GLYR1	16	4855240	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10		4855240	85499513	43	19635											
VWA3A	146177	hgsc.bcm.edu	37	16	22122217	22122217	+	Silent	SNP	C	C	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	22122217	C	T	22122217	2	4	316	1	0	0	0	0	0	0	0	1	17252	874	31	1		1	VWA3A	16	22122217	Silent	SNP	C	TCGA-BP-4351-01A-01D-1366-10	17266977	22122217	68232536	44	19636											
LRRC48	83450	hgsc.bcm.edu;ucsc.edu	37	17	17910368	17910368	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	17910368	C	G	17910368	3	3	316	1	0	0	0	0	1	0	0	0	9012	506	18	4	1271	4	LRRC48	17	17910368	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10		17910368	63284842	45	19637											
C18orf21	83608	hgsc.bcm.edu;ucsc.edu	37	18	33557476	33557476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	33557476	T	G	33557476	3	3	316	1	0	0	0	0	1	0	0	0	1899	1551	54	5	418	5	C18orf21	18	33557476	Missense_Mutation	SNP	T	TCGA-BP-4351-01A-01D-1366-10		33557476	44519772	46	19638											
TXNL4A	10907	hgsc.bcm.edu	37	18	77733688	77733688	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	77733688	G	T	77733688	4	4	316	1	0	0	0	0	0	1	0	0	16817	1024	36	4	6	4	TXNL4A	18	77733688	Nonsense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	44176212	77733688	343560	47	19639											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9087231	9087231	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	9087231	T	G	9087231	3	3	316	1	0	0	0	0	1	0	0	0	9980	1780	62	5	39275	5	MUC16	19	9087231	Missense_Mutation	SNP	T	TCGA-BP-4351-01A-01D-1366-10		9087231	50041752	48	19640											
GIPC1	10755	hgsc.bcm.edu	37	19	14591229	14591229	+	Silent	SNP	A	A	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	14591229	A	G	14591229	2	3	316	1	0	0	0	0	0	0	0	1	6399	358	13	3		3	GIPC1	19	14591229	Silent	SNP	A	TCGA-BP-4351-01A-01D-1366-10	5503998	14591229	44537754	49	19641											
NWD1	284434	hgsc.bcm.edu	37	19	16910780	16910780	+	Silent	SNP	G	G	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	16910780	G	T	16910780	2	4	316	1	0	0	0	0	0	0	0	1	10788	1219	43	4		4	NWD1	19	16910780	Silent	SNP	G	TCGA-BP-4351-01A-01D-1366-10	2319551	16910780	42218203	50	19642											
CCDC97	90324	hgsc.bcm.edu	37	19	41822486	41822486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	41822486	C	A	41822486	3	1	316	1	0	0	0	0	1	0	0	0	2877	711	25	4	250	4	CCDC97	19	41822486	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10	24911706	41822486	17306497	51	19643											
PRR19	284338	hgsc.bcm.edu	37	19	42814578	42814578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	42814578	G	A	42814578	3	1	316	1	0	0	0	0	1	0	0	0	12601	1232	43	2	763	2	PRR19	19	42814578	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	992092	42814578	16314405	52	19644											
ZNF225	7768	hgsc.bcm.edu;ucsc.edu	37	19	44636673	44636673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	44636673	G	T	44636673	3	4	316	1	0	0	0	0	1	0	0	0	17791	1203	42	4	1920	4	ZNF225	19	44636673	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	1822095	44636673	14492310	53	19645											
PRKD2	25865	hgsc.bcm.edu	37	19	47177809	47177809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	47177809	C	T	47177809	3	4	316	1	0	0	0	0	1	0	0	0	12529	623	22	2	32	2	PRKD2	19	47177809	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10	2541136	47177809	11951174	54	19646											
CCDC114	93233	hgsc.bcm.edu	37	19	48821663	48821663	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	C	48821663	G	C	48821663	3	2	316	1	0	0	0	0	1	0	0	0	2753	1261	44	4	1830	4	CCDC114	19	48821663	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	1643854	48821663	10307320	55	19647											
SIGLEC8	27181	hgsc.bcm.edu	37	19	51958885	51958885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	51958885	G	A	51958885	3	1	316	1	0	0	0	0	1	0	0	0	14327	1087	38	1	677	1	SIGLEC8	19	51958885	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	3137222	51958885	7170098	56	19648											
CNOT3	4849	hgsc.bcm.edu;ucsc.edu	37	19	54656179	54656179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	54656179	A	T	54656179	3	4	316	1	0	0	0	0	1	0	0	0	3622	188	7	5	1774	5	CNOT3	19	54656179	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10	2697294	54656179	4472804	57	19649											
GGT7	2686	hgsc.bcm.edu;ucsc.edu	37	20	33450696	33450696	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	33450696	G	A	33450696	4	1	316	1	0	0	0	0	0	1	0	0	6371	1386	48	2	1562	2	GGT7	20	33450696	Nonsense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10		33450696	29574824	58	19650											
MAGEB16	139604	hgsc.bcm.edu;ucsc.edu	37	X	35821146	35821146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	35821146	G	A	35821146	3	1	316	1	0	0	0	0	1	0	0	0	9181	1203	42	2	835	2	MAGEB16	23	35821146	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10		35821146	119449414	59	19651											
CCNB3	85417	hgsc.bcm.edu;ucsc.edu	37	X	50090767	50090767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	50090767	G	A	50090767	3	1	316	1	0	0	0	0	1	0	0	0	2916	1174	41	2	3987	2	CCNB3	23	50090767	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	14269621	50090767	105179793	60	19652											
KDM5C	8242	ucsc.edu	37	X	53224160	53224160	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	C	-	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	-	53224160	C	-	53224160	7	5	316	1	0	1	0	1	0	0	0	0	8142	922	32	0	1409	0	KDM5C	23	53224160	Frame_Shift_Del	DEL	C	TCGA-BP-4351-01A-01D-1366-10	3133393	53224160	102046400	61	19653											
TEX11	56159	hgsc.bcm.edu;ucsc.edu	37	X	69811638	69811638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	A	69811638	C	A	69811638	3	1	316	1	0	0	0	0	1	0	0	0	15786	912	32	4	698	4	TEX11	23	69811638	Missense_Mutation	SNP	C	TCGA-BP-4351-01A-01D-1366-10	16587478	69811638	85458922	62	19654											
UBE2A	7319	hgsc.bcm.edu;ucsc.edu	37	X	118716565	118716565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	118716565	A	G	118716565	3	3	316	1	0	0	0	0	1	0	0	0	16856	420	15	3	274	3	UBE2A	23	118716565	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10	48904927	118716565	36553995	63	19655											
PHF6	84295	hgsc.bcm.edu;ucsc.edu	37	X	133547905	133547905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	T	133547905	G	T	133547905	3	4	316	1	0	0	0	0	1	0	0	0	11845	1174	41	4	663	4	PHF6	23	133547905	Missense_Mutation	SNP	G	TCGA-BP-4351-01A-01D-1366-10	14831340	133547905	21722655	64	19656											
DUSP9	1852	hgsc.bcm.edu;ucsc.edu	37	X	152915555	152915555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dfe72e10-d0cd-47dd-a0f2-c6517849c2fc	9c41f931-d361-47f4-a1c4-87c7114b3ccf	G	152915555	A	G	152915555	3	3	316	1	0	0	0	0	1	0	0	0	4834	449	16	3	960	3	DUSP9	23	152915555	Missense_Mutation	SNP	A	TCGA-BP-4351-01A-01D-1366-10	19367650	152915555	2355005	65	19657											
PADI6	353238	hgsc.bcm.edu;ucsc.edu	37	1	17708507	17708507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	17708507	G	T	17708507	3	4	317	1	0	0	0	0	1	0	0	0	11388	971	34	4	621	4	PADI6	1	17708507	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10		17708507	231542114	1	19658											
MACF1	23499	hgsc.bcm.edu;ucsc.edu	37	1	39889851	39889851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	39889851	G	T	39889851	3	4	317	1	0	0	0	0	1	0	0	0	9151	1029	36	4	16488	4	MACF1	1	39889851	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	22181344	39889851	209360770	2	19659											
ZNF642	0	hgsc.bcm.edu;ucsc.edu	37	1	40954792	40954792	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	40954792	C	G	40954792	3	3	317	1	0	0	0	0	1	0	0	0	18070	564	20	4	262	4	ZNF642	1	40954792	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	1064941	40954792	208295829	3	19660											
PCSK9	255738	hgsc.bcm.edu	37	1	55512295	55512295	+	Missense_Mutation	SNP	C	C	G	rs137878146	alternate_allele	TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	55512295	C	G	55512295	3	3	317	1	0	0	0	0	1	0	0	0	11613	643	23	4	509	4	PCSK9	1	55512295	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	14557503	55512295	193738326	4	19661											
PPM1J	333926	hgsc.bcm.edu	37	1	113252813	113252813	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	113252813	G	C	113252813	3	2	317	1	0	0	0	0	1	0	0	0	12352	1232	43	4	31	4	PPM1J	1	113252813	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	57740518	113252813	135997808	5	19662											
LRIG2	9860	hgsc.bcm.edu;ucsc.edu	37	1	113652931	113652931	+	Silent	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	113652931	G	A	113652931	2	1	317	1	0	0	0	0	0	0	0	1	8952	1277	45	2		2	LRIG2	1	113652931	Silent	SNP	G	TCGA-BP-4352-01A-01D-1366-10	400118	113652931	135597690	6	19663											
TNR	7143	hgsc.bcm.edu	37	1	175355249	175355249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	175355249	G	T	175355249	3	4	317	1	0	0	0	0	1	0	0	0	16350	1203	42	4	2444	4	TNR	1	175355249	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	61702318	175355249	73895372	7	19664											
HHAT	55733	hgsc.bcm.edu	37	1	210761285	210761285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	210761285	G	T	210761285	3	4	317	1	0	0	0	0	1	0	0	0	7096	1232	43	4	1219	4	HHAT	1	210761285	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	35406036	210761285	38489336	8	19665											
INTS7	25896	hgsc.bcm.edu	37	1	212161322	212161322	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	212161322	C	G	212161322	3	3	317	1	0	0	0	0	1	0	0	0	7790	912	32	4	2037	4	INTS7	1	212161322	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	1400037	212161322	37089299	9	19666											
TMEM206	55248	hgsc.bcm.edu	37	1	212548582	212548582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	212548582	A	G	212548582	3	3	317	1	0	0	0	0	1	0	0	0	16143	14	1	3	216	3	TMEM206	1	212548582	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	387260	212548582	36702039	10	19667											
SPATA17	128153	hgsc.bcm.edu;ucsc.edu	37	1	217955528	217955528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	217955528	G	A	217955528	3	1	317	1	0	0	0	0	1	0	0	0	15014	942	33	2	766	2	SPATA17	1	217955528	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	5406946	217955528	31295093	11	19668											
RYR2	6262	hgsc.bcm.edu;ucsc.edu	37	1	237801753	237801753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	237801753	A	G	237801753	3	3	317	1	0	0	0	0	1	0	0	0	13782	296	11	3	7067	3	RYR2	1	237801753	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	19846225	237801753	11448868	12	19669											
LCT	3938	hgsc.bcm.edu;ucsc.edu	37	2	136566271	136566271	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	136566271	G	C	136566271	3	2	317	1	0	0	0	0	1	0	0	0	8700	1319	46	4	2177	4	LCT	2	136566271	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10		136566271	106633102	13	19670											
TTLL4	9654	hgsc.bcm.edu;ucsc.edu	37	2	219618334	219618334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	219618334	A	G	219618334	3	3	317	1	0	0	0	0	1	0	0	0	16741	449	16	3	3352	3	TTLL4	2	219618334	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	83052063	219618334	23581039	14	19671											
STK11IP	114790	hgsc.bcm.edu	37	2	220478482	220478482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	220478482	C	T	220478482	3	4	317	1	0	0	0	0	1	0	0	0	15300	594	21	2	2661	2	STK11IP	2	220478482	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	860148	220478482	22720891	15	19672											
RAB5A	5868	hgsc.bcm.edu;ucsc.edu	37	3	20017171	20017171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	20017171	G	A	20017171	3	1	317	1	0	0	0	0	1	0	0	0	12961	1058	37	1	248	1	RAB5A	3	20017171	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10		20017171	178005259	16	19673											
CSRNP1	64651	hgsc.bcm.edu	37	3	39184799	39184799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	39184799	T	A	39184799	3	1	317	1	0	0	0	0	1	0	0	0	3965	1551	54	5	256	5	CSRNP1	3	39184799	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	19167628	39184799	158837631	17	19674											
FYCO1	79443	hgsc.bcm.edu	37	3	46001032	46001032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	46001032	T	C	46001032	3	2	317	1	0	0	0	0	1	0	0	0	6132	1667	58	3	1024	3	FYCO1	3	46001032	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	6816233	46001032	152021398	18	19675											
UBA7	7318	hgsc.bcm.edu	37	3	49850746	49850746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	49850746	T	C	49850746	3	2	317	1	0	0	0	0	1	0	0	0	16845	1725	60	3	2830	3	UBA7	3	49850746	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	3849714	49850746	148171684	19	19676											
BAP1	8314	hgsc.bcm.edu	37	3	52440367	52440367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	52440367	T	G	52440367	3	3	317	1	0	0	0	0	1	0	0	0	1311	1812	63	5	1540	5	BAP1	3	52440367	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	2589621	52440367	145582063	20	19677											
FAM3D	131177	hgsc.bcm.edu;ucsc.edu	37	3	58620032	58620032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	58620032	C	T	58620032	3	4	317	1	0	0	0	0	1	0	0	0	5566	623	22	2	29	2	FAM3D	3	58620032	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	6179665	58620032	139402398	21	19678											
VGLL3	389136	hgsc.bcm.edu;ucsc.edu	37	3	87027696	87027696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	87027696	C	A	87027696	3	1	317	1	0	0	0	0	1	0	0	0	17172	623	22	4	609	4	VGLL3	3	87027696	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	28407664	87027696	110994734	22	19679											
KIAA2018	205717	hgsc.bcm.edu;ucsc.edu	37	3	113377605	113377605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	113377605	T	C	113377605	3	2	317	1	0	0	0	0	1	0	0	0	8275	1551	54	3	3817	3	KIAA2018	3	113377605	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	26349909	113377605	84644825	23	19680											
ZBTB38	253461	hgsc.bcm.edu;ucsc.edu	37	3	141163202	141163202	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	141163202	G	T	141163202	4	4	317	1	0	0	0	0	0	1	0	0	17551	1175	41	4	1974	4	ZBTB38	3	141163202	Nonsense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	27785597	141163202	56859228	24	19681											
PIK3CA	5290	hgsc.bcm.edu;ucsc.edu	37	3	178916854	178916854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	178916854	G	A	178916854	3	1	317	1	0	0	0	0	1	0	0	0	11920	943	33	2	243	2	PIK3CA	3	178916854	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	37753652	178916854	19105576	25	19682											
KLHL24	54800	hgsc.bcm.edu;ucsc.edu	37	3	183368567	183368567	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	183368567	G	C	183368567	3	2	317	1	0	0	0	0	1	0	0	0	8386	933	33	4	425	4	KLHL24	3	183368567	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	4451713	183368567	14653863	26	19683											
CWH43	80157	hgsc.bcm.edu;ucsc.edu	37	4	49034691	49034691	+	Silent	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	49034691	C	T	49034691	2	4	317	1	0	0	0	0	0	0	0	1	4075	697	25	2		2	CWH43	4	49034691	Silent	SNP	C	TCGA-BP-4352-01A-01D-1366-10		49034691	142119585	27	19684											
BDP1	55814	hgsc.bcm.edu;ucsc.edu	37	5	70806004	70806004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	70806004	A	G	70806004	3	3	317	1	0	0	0	0	1	0	0	0	1395	333	12	3	3151	3	BDP1	5	70806004	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10		70806004	110109256	28	19685											
HIST1H4H	8365	hgsc.bcm.edu;ucsc.edu	37	6	26285450	26285450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	26285450	C	T	26285450	3	4	317	1	0	0	0	0	1	0	0	0	7179	884	31	1	37	1	HIST1H4H	6	26285450	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10		26285450	144829617	29	19686											
ZNF323	0	hgsc.bcm.edu;ucsc.edu	37	6	28293947	28293947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	28293947	G	A	28293947	3	1	317	1	0	0	0	0	1	0	0	0	17855	1348	47	2	7	2	ZNF323	6	28293947	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	2008497	28293947	142821120	30	19687											
GCM1	8521	hgsc.bcm.edu	37	6	52995691	52995691	+	Missense_Mutation	SNP	C	C	G	rs76623467	byfrequency;by1000genomes;alternate_allele	TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	52995691	C	G	52995691	3	3	317	1	0	0	0	0	1	0	0	0	6304	564	20	4	838	4	GCM1	6	52995691	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	24701744	52995691	118119376	31	19688											
FAM46A	55603	hgsc.bcm.edu;ucsc.edu	37	6	82459989	82459989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	82459989	A	G	82459989	3	3	317	1	0	0	0	0	1	0	0	0	5572	217	8	3	580	3	FAM46A	6	82459989	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	29464298	82459989	88655078	32	19689											
PREP	5550	hgsc.bcm.edu	37	6	105800846	105800846	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	105800846	C	T	105800846	5	4	317	1	0	0	0	0	0	0	1	0	12484	521	18	2	1344	2	PREP	6	105800846	Splice_Site	SNP	C	TCGA-BP-4352-01A-01D-1366-10	23340857	105800846	65314221	33	19690											
MICAL1	64780	hgsc.bcm.edu;ucsc.edu	37	6	109771217	109771217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	109771217	C	A	109771217	3	1	317	1	0	0	0	0	1	0	0	0	9576	796	28	4	2008	4	MICAL1	6	109771217	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	3970371	109771217	61343850	34	19691											
PLG	5340	hgsc.bcm.edu;ucsc.edu	37	6	161135849	161135849	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	161135849	G	T	161135849	4	4	317	1	0	0	0	0	0	1	0	0	12093	943	33	4	597	4	PLG	6	161135849	Nonsense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	51364632	161135849	9979218	35	19692											
SDK1	221935	hgsc.bcm.edu;ucsc.edu	37	7	3678698	3678698	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	3678698	G	C	3678698	3	2	317	1	0	0	0	0	1	0	0	0	13981	942	33	4	531	4	SDK1	7	3678698	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10		3678698	155459965	36	19693											
TACC1	6867	hgsc.bcm.edu;ucsc.edu	37	8	38704295	38704295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	38704295	G	T	38704295	3	4	317	1	0	0	0	0	1	0	0	0	15513	962	34	4	2353	4	TACC1	8	38704295	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10		38704295	107659727	37	19694											
ZNF572	137209	hgsc.bcm.edu;ucsc.edu	37	8	125990031	125990031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	125990031	G	T	125990031	3	4	317	1	0	0	0	0	1	0	0	0	18016	1183	41	4	1527	4	ZNF572	8	125990031	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	87285736	125990031	20373991	38	19695											
OPLAH	26873	hgsc.bcm.edu	37	8	145107992	145107992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	145107992	A	C	145107992	3	2	317	1	0	0	0	0	1	0	0	0	10883	14	1	5	984	5	OPLAH	8	145107992	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	19117961	145107992	1256030	39	19696											
CDK9	1025	hgsc.bcm.edu	37	9	130548496	130548496	+	Silent	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	130548496	C	G	130548496	2	3	317	1	0	0	0	0	0	0	0	1	3153	581	21	4		4	CDK9	9	130548496	Silent	SNP	C	TCGA-BP-4352-01A-01D-1366-10		130548496	10664935	40	19697											
GOLGA2	2801	hgsc.bcm.edu	37	9	131019438	131019438	+	Missense_Mutation	SNP	G	G	A	rs113640242	bycluster	TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	131019438	G	A	131019438	3	1	317	1	0	0	0	0	1	0	0	0	6559	1232	43	2	95	2	GOLGA2	9	131019438	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	470942	131019438	10193993	41	19698											
TTF1	7270	hgsc.bcm.edu	37	9	135277682	135277682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	135277682	G	A	135277682	3	1	317	1	0	0	0	0	1	0	0	0	16730	1319	46	2	2230	2	TTF1	9	135277682	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	4258244	135277682	5935749	42	19699											
PITRM1	10531	hgsc.bcm.edu	37	10	3187802	3187802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	3187802	G	T	3187802	3	4	317	1	0	0	0	0	1	0	0	0	11960	1232	43	4	698	4	PITRM1	10	3187802	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10		3187802	132346945	43	19700											
ITGA8	8516	hgsc.bcm.edu;ucsc.edu	37	10	15714684	15714684	+	Silent	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	15714684	C	T	15714684	2	4	317	1	0	0	0	0	0	0	0	1	7889	854	30	2		2	ITGA8	10	15714684	Silent	SNP	C	TCGA-BP-4352-01A-01D-1366-10	12526882	15714684	119820063	44	19701											
FAM21A	387680	hgsc.bcm.edu	37	10	51863872	51863872	+	Missense_Mutation	SNP	T	T	C	rs2490899		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	51863872	T	C	51863872	3	2	317	1	0	0	0	0	1	0	0	0	5544	1821	63	3	1776	3	FAM21A	10	51863872	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	36149188	51863872	83670875	45	19702											
SGPL1	8879	hgsc.bcm.edu;ucsc.edu	37	10	72610956	72610956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	72610956	A	G	72610956	3	3	317	1	0	0	0	0	1	0	0	0	14231	449	16	3	260	3	SGPL1	10	72610956	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	20747084	72610956	62923791	46	19703											
MYST4	0	hgsc.bcm.edu;ucsc.edu	37	10	76788380	76788380	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	76788380	G	C	76788380	3	2	317	1	0	0	0	0	1	0	0	0	10112	933	33	4	3860	4	MYST4	10	76788380	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	4177424	76788380	58746367	47	19704											
CSTF3	1479	hgsc.bcm.edu;ucsc.edu	37	11	33127147	33127147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	33127147	T	G	33127147	3	3	317	1	0	0	0	0	1	0	0	0	3988	1783	62	5	1658	5	CSTF3	11	33127147	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10		33127147	101879369	48	19705											
CREB3L1	90993	hgsc.bcm.edu	37	11	46332690	46332690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	46332690	G	C	46332690	3	2	317	1	0	0	0	0	1	0	0	0	3858	1203	42	4	721	4	CREB3L1	11	46332690	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	13205543	46332690	88673826	49	19706											
KDM2A	22992	hgsc.bcm.edu;ucsc.edu	37	11	67021798	67021798	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	67021798	T	G	67021798	3	3	317	1	0	0	0	0	1	0	0	0	8131	1664	58	5	3290	5	KDM2A	11	67021798	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	20689108	67021798	67984718	50	19707											
ARHGEF17	9828	hgsc.bcm.edu	37	11	73021667	73021667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	73021667	C	A	73021667	3	1	317	1	0	0	0	0	1	0	0	0	900	680	24	4	1986	4	ARHGEF17	11	73021667	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	5999869	73021667	61984849	51	19708											
JRKL	8690	hgsc.bcm.edu;ucsc.edu	37	11	96124291	96124291	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	96124291	C	G	96124291	3	3	317	1	0	0	0	0	1	0	0	0	7972	876	31	4	480	4	JRKL	11	96124291	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	23102624	96124291	38882225	52	19709											
FRS2	10818	hgsc.bcm.edu;ucsc.edu	37	12	69965176	69965176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	69965176	C	A	69965176	3	1	317	1	0	0	0	0	1	0	0	0	6068	478	17	4	384	4	FRS2	12	69965176	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10		69965176	63886719	53	19710											
NOS1	4842	hgsc.bcm.edu;ucsc.edu	37	12	117710228	117710228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	117710228	G	A	117710228	3	1	317	1	0	0	0	0	1	0	0	0	10548	1116	39	1	2583	1	NOS1	12	117710228	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	47745052	117710228	16141667	54	19711											
SLC15A4	121260	hgsc.bcm.edu;ucsc.edu	37	12	129278856	129278856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	129278856	G	A	129278856	3	1	317	1	0	0	0	0	1	0	0	0	14414	971	34	2	118	2	SLC15A4	12	129278856	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	11568628	129278856	4573039	55	19712											
NEK3	4752	hgsc.bcm.edu;ucsc.edu	37	13	52707349	52707349	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	52707349	C	A	52707349	4	1	317	1	0	0	0	0	0	1	0	0	10332	864	30	4	74	4	NEK3	13	52707349	Nonsense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10		52707349	62462529	56	19713											
RNASE9	390443	hgsc.bcm.edu;ucsc.edu	37	14	21024785	21024785	+	Silent	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	21024785	A	G	21024785	2	3	317	1	0	0	0	0	0	0	0	1	13423	127	5	3		3	RNASE9	14	21024785	Silent	SNP	A	TCGA-BP-4352-01A-01D-1366-10		21024785	86324755	57	19714											
RNASE1	6035	hgsc.bcm.edu	37	14	21270086	21270086	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	21270086	T	G	21270086	3	3	317	1	0	0	0	0	1	0	0	0	13412	1580	55	5	332	5	RNASE1	14	21270086	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	245301	21270086	86079454	58	19715											
MYH6	4624	hgsc.bcm.edu	37	14	23855332	23855332	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	23855332	C	G	23855332	3	3	317	1	0	0	0	0	1	0	0	0	10045	912	32	4	875	4	MYH6	14	23855332	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	2585246	23855332	83494208	59	19716											
POLE2	5427	hgsc.bcm.edu;ucsc.edu	37	14	50131848	50131848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	50131848	C	G	50131848	3	3	317	1	0	0	0	0	1	0	0	0	12204	565	20	4	1021	4	POLE2	14	50131848	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	26276516	50131848	57217692	60	19717											
ZFP36L1	677	hgsc.bcm.edu;ucsc.edu	37	14	69257206	69257207	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	69257207	-	A	69257206	7	5	317	1	0	1	1	0	0	0	0	0	17658	1754	61	0	959	0	ZFP36L1	14	69257206	Frame_Shift_Ins	INS	-	TCGA-BP-4352-01A-01D-1366-10	19125358	69257206	38092334	61	19718											
NRXN3	9369	hgsc.bcm.edu	37	14	80130119	80130119	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	80130119	A	G	80130119	5	3	317	1	0	0	0	0	0	0	1	0	10674	434	15	3	2621	3	NRXN3	14	80130119	Splice_Site	SNP	A	TCGA-BP-4352-01A-01D-1366-10	10872913	80130119	27219421	62	19719											
CYFIP1	23191	hgsc.bcm.edu;ucsc.edu	37	15	22956552	22956552	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	22956552	C	T	22956552	4	4	317	1	0	0	0	0	0	1	0	0	4139	876	31	1	2228	1	CYFIP1	15	22956552	Nonsense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10		22956552	79574840	63	19720											
GABRG3	2567	hgsc.bcm.edu;ucsc.edu	37	15	27772598	27772598	+	Silent	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	27772598	C	T	27772598	2	4	317	1	0	0	0	0	0	0	0	1	6180	581	21	2		2	GABRG3	15	27772598	Silent	SNP	C	TCGA-BP-4352-01A-01D-1366-10	4816046	27772598	74758794	64	19721											
AQR	9716	hgsc.bcm.edu;ucsc.edu	37	15	35174721	35174721	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	35174721	C	G	35174721	3	3	317	1	0	0	0	0	1	0	0	0	835	593	21	4	1346	4	AQR	15	35174721	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	7402123	35174721	67356671	65	19722											
DTWD1	56986	hgsc.bcm.edu;ucsc.edu	37	15	49917573	49917573	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	49917573	A	C	49917573	3	2	317	1	0	0	0	0	1	0	0	0	4793	449	16	5	211	5	DTWD1	15	49917573	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	14742852	49917573	52613819	66	19723											
HMG20A	10363	hgsc.bcm.edu;ucsc.edu	37	15	77771582	77771582	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	77771582	T	G	77771582	3	3	317	1	0	0	0	0	1	0	0	0	7228	1742	61	5	999	5	HMG20A	15	77771582	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	27854009	77771582	24759810	67	19724											
TMC3	342125	hgsc.bcm.edu;ucsc.edu	37	15	81644159	81644159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	81644159	A	G	81644159	3	3	317	1	0	0	0	0	1	0	0	0	15998	101	4	3	2395	3	TMC3	15	81644159	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	3872577	81644159	20887233	68	19725											
LRRK1	79705	hgsc.bcm.edu;ucsc.edu	37	15	101569276	101569276	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	101569276	C	G	101569276	3	3	317	1	0	0	0	0	1	0	0	0	9039	903	32	4	2876	4	LRRK1	15	101569276	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	19925117	101569276	962116	69	19726											
RAB40C	57799	hgsc.bcm.edu	37	16	675459	675459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	675459	A	G	675459	3	3	317	1	0	0	0	0	1	0	0	0	12955	130	5	3	306	3	RAB40C	16	675459	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10		675459	89679294	70	19727											
TMC5	79838	hgsc.bcm.edu;ucsc.edu	37	16	19451434	19451434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	19451434	G	A	19451434	3	1	317	1	0	0	0	0	1	0	0	0	16000	1145	40	1	76	1	TMC5	16	19451434	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	18775975	19451434	70903319	71	19728											
CACNG3	10368	hgsc.bcm.edu;ucsc.edu	37	16	24268095	24268095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	24268095	G	A	24268095	3	1	317	1	0	0	0	0	1	0	0	0	2560	1261	44	2	22	2	CACNG3	16	24268095	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	4816661	24268095	66086658	72	19729											
LONP2	83752	hgsc.bcm.edu;ucsc.edu	37	16	48311325	48311325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	48311325	C	G	48311325	3	3	317	1	0	0	0	0	1	0	0	0	8900	680	24	4	1348	4	LONP2	16	48311325	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	24043230	48311325	42043428	73	19730											
ZNF821	55565	hgsc.bcm.edu	37	16	71893982	71893982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	71893982	A	C	71893982	3	2	317	1	0	0	0	0	1	0	0	0	18190	131	5	5	64	5	ZNF821	16	71893982	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	23582657	71893982	18460771	74	19731											
TAF1C	9013	hgsc.bcm.edu;ucsc.edu	37	16	84216708	84216708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	84216708	C	G	84216708	3	3	317	1	0	0	0	0	1	0	0	0	15533	680	24	4	2189	4	TAF1C	16	84216708	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	12322726	84216708	6138045	75	19732											
MTHFSD	64779	hgsc.bcm.edu;ucsc.edu	37	16	86585687	86585687	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	86585687	T	A	86585687	3	1	317	1	0	0	0	0	1	0	0	0	9940	1606	56	5	986	5	MTHFSD	16	86585687	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	2368979	86585687	3769066	76	19733											
IMPA2	3613	hgsc.bcm.edu;ucsc.edu	37	18	12030440	12030440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	12030440	C	T	12030440	3	4	317	1	0	0	0	0	1	0	0	0	7730	759	27	1	880	1	IMPA2	18	12030440	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10		12030440	66046808	77	19734											
SLC14A2	8170	hgsc.bcm.edu;ucsc.edu	37	18	43249307	43249307	+	Silent	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	43249307	C	T	43249307	2	4	317	1	0	0	0	0	0	0	0	1	14410	709	25	2		2	SLC14A2	18	43249307	Silent	SNP	C	TCGA-BP-4352-01A-01D-1366-10	31218867	43249307	34827941	78	19735											
MYO1F	4542	hgsc.bcm.edu	37	19	8612963	8612963	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	8612963	T	A	8612963	3	1	317	1	0	0	0	0	1	0	0	0	10080	1609	56	5	2138	5	MYO1F	19	8612963	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10		8612963	50516020	79	19736											
CACNA1A	773	hgsc.bcm.edu	37	19	13366050	13366050	+	Silent	SNP	G	G	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	13366050	G	T	13366050	2	4	317	1	0	0	0	0	0	0	0	1	2540	1280	45	4		4	CACNA1A	19	13366050	Silent	SNP	G	TCGA-BP-4352-01A-01D-1366-10	4753087	13366050	45762933	80	19737											
CACNA1A	773	hgsc.bcm.edu;ucsc.edu	37	19	13414666	13414666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	13414666	C	A	13414666	3	1	317	1	0	0	0	0	1	0	0	0	2540	478	17	4	5740	4	CACNA1A	19	13414666	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	48616	13414666	45714317	81	19738											
PODNL1	79883	hgsc.bcm.edu	37	19	14046562	14046562	+	Missense_Mutation	SNP	G	G	C	rs151337979	alternate_allele	TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	14046562	G	C	14046562	3	2	317	1	0	0	0	0	1	0	0	0	12186	1000	35	4	1067	4	PODNL1	19	14046562	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	631896	14046562	45082421	82	19739											
ZNF781	163115	hgsc.bcm.edu;ucsc.edu	37	19	38160410	38160410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	38160410	G	A	38160410	3	1	317	1	0	0	0	0	1	0	0	0	18166	1319	46	2	347	2	ZNF781	19	38160410	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	24113848	38160410	20968573	83	19740											
DIDO1	11083	hgsc.bcm.edu;ucsc.edu	37	20	61527636	61527636	+	Silent	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	61527636	G	A	61527636	2	1	317	1	0	0	0	0	0	0	0	1	4524	1372	48	2		2	DIDO1	20	61527636	Silent	SNP	G	TCGA-BP-4352-01A-01D-1366-10		61527636	1497884	84	19741											
NCAM2	4685	hgsc.bcm.edu;ucsc.edu	37	21	22652947	22652947	+	Silent	SNP	A	A	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	22652947	A	G	22652947	2	3	317	1	0	0	0	0	0	0	0	1	10210	291	11	3		3	NCAM2	21	22652947	Silent	SNP	A	TCGA-BP-4352-01A-01D-1366-10		22652947	25476948	85	19742											
IFNAR1	3454	hgsc.bcm.edu;ucsc.edu	37	21	34713364	34713364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	A	34713364	G	A	34713364	3	1	317	1	0	0	0	0	1	0	0	0	7551	1319	46	2	270	2	IFNAR1	21	34713364	Missense_Mutation	SNP	G	TCGA-BP-4352-01A-01D-1366-10	12060417	34713364	13416531	86	19743											
ASMTL	8623	hgsc.bcm.edu	37	X	1537881	1537881	+	Missense_Mutation	SNP	C	C	T	rs4503285	bycluster;byfrequency;by1000genomes	TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	1537881	C	T	1537881	3	4	317	1	0	0	0	0	1	0	0	0	1046	536	19	1	509	1	ASMTL	23	1537881	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10		1537881	153732679	87	19744											
HUWE1	10075	hgsc.bcm.edu;ucsc.edu	37	X	53585980	53585980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	53585980	C	T	53585980	3	4	317	1	0	0	0	0	1	0	0	0	7468	922	32	2	5275	2	HUWE1	23	53585980	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	52048099	53585980	101684580	88	19745											
ALAS2	212	hgsc.bcm.edu;ucsc.edu	37	X	55051164	55051164	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	G	55051164	C	G	55051164	3	3	317	1	0	0	0	0	1	0	0	0	485	680	24	4	1508	4	ALAS2	23	55051164	Missense_Mutation	SNP	C	TCGA-BP-4352-01A-01D-1366-10	1465184	55051164	100219396	89	19746											
ABCB7	22	hgsc.bcm.edu;ucsc.edu	37	X	74290344	74290344	+	Silent	SNP	A	A	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	74290344	A	C	74290344	2	2	317	1	0	0	0	0	0	0	0	1	46	117	5	5		5	ABCB7	23	74290344	Silent	SNP	A	TCGA-BP-4352-01A-01D-1366-10	19239180	74290344	80980216	90	19747											
ZNF711	7552	hgsc.bcm.edu	37	X	84526278	84526278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	C	84526278	T	C	84526278	3	2	317	1	0	0	0	0	1	0	0	0	18128	1609	56	3	1756	3	ZNF711	23	84526278	Missense_Mutation	SNP	T	TCGA-BP-4352-01A-01D-1366-10	10235934	84526278	70744282	91	19748											
HCFC1	3054	hgsc.bcm.edu	37	X	153215992	153215992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	153215992	A	T	153215992	3	4	317	1	0	0	0	0	1	0	0	0	6998	272	10	5	413	5	HCFC1	23	153215992	Missense_Mutation	SNP	A	TCGA-BP-4352-01A-01D-1366-10	68689714	153215992	2054568	92	19749											
ATP6AP1	537	hgsc.bcm.edu	37	X	153662580	153662580	+	Silent	SNP	C	C	T	novel		TCGA-BP-4352-01A-01D-1366-10	TCGA-BP-4352-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b976a492-5792-42d3-bec3-5bbb7292cac5	9461b657-9b8f-4cf6-a0eb-27cb3ae9923a	T	153662580	C	T	153662580	2	4	317	1	0	0	0	0	0	0	0	1	1165	639	23	1		1	ATP6AP1	23	153662580	Silent	SNP	C	TCGA-BP-4352-01A-01D-1366-10	446588	153662580	1607980	93	19750											
PLA2G2C	391013	hgsc.bcm.edu;ucsc.edu	37	1	20499305	20499305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	20499305	C	T	20499305	3	4	318	1	0	0	0	0	1	0	0	0	12003	536	19	1	192	1	PLA2G2C	1	20499305	Missense_Mutation	SNP	C	TCGA-BP-4354-01A-02D-1366-10		20499305	228751316	1	19751											
SPTA1	6708	hgsc.bcm.edu;ucsc.edu	37	1	158621257	158621257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	G	158621257	T	G	158621257	3	3	318	1	0	0	0	0	1	0	0	0	15128	1449	50	5	3998	5	SPTA1	1	158621257	Missense_Mutation	SNP	T	TCGA-BP-4354-01A-02D-1366-10	138121952	158621257	90629364	2	19752											
PRSS38	339501	hgsc.bcm.edu;ucsc.edu	37	1	228033871	228033871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	228033871	G	A	228033871	3	1	318	1	0	0	0	0	1	0	0	0	12637	1145	40	1	961	1	PRSS38	1	228033871	Missense_Mutation	SNP	G	TCGA-BP-4354-01A-02D-1366-10	69412614	228033871	21216750	3	19753											
NID1	4811	hgsc.bcm.edu	37	1	236143954	236143954	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	236143954	C	T	236143954	5	4	318	1	0	0	0	0	0	0	1	0	10421	695	24	2	532	2	NID1	1	236143954	Splice_Site	SNP	C	TCGA-BP-4354-01A-02D-1366-10	8110083	236143954	13106667	4	19754											
TNS1	7145	hgsc.bcm.edu	37	2	218683139	218683139	+	Missense_Mutation	SNP	G	G	A	rs34291329	bycluster;byfrequency;by1000genomes	TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	218683139	G	A	218683139	3	1	318	1	0	0	0	0	1	0	0	0	16355	1174	41	2	1643	2	TNS1	2	218683139	Missense_Mutation	SNP	G	TCGA-BP-4354-01A-02D-1366-10		218683139	24516234	5	19755											
CDCP1	64866	hgsc.bcm.edu	37	3	45127493	45127493	+	Silent	SNP	C	C	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	45127493	C	T	45127493	2	4	318	1	0	0	0	0	0	0	0	1	3095	871	31	1		1	CDCP1	3	45127493	Silent	SNP	C	TCGA-BP-4354-01A-02D-1366-10		45127493	152894937	6	19756											
LTF	4057	hgsc.bcm.edu	37	3	46480866	46480866	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	46480866	A	T	46480866	3	4	318	1	0	0	0	0	1	0	0	0	9086	72	3	5	315	5	LTF	3	46480866	Missense_Mutation	SNP	A	TCGA-BP-4354-01A-02D-1366-10	1353373	46480866	151541564	7	19757											
CWH43	80157	hgsc.bcm.edu;ucsc.edu	37	4	49005842	49005842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	49005842	G	T	49005842	3	4	318	1	0	0	0	0	1	0	0	0	4075	1357	47	4	919	4	CWH43	4	49005842	Missense_Mutation	SNP	G	TCGA-BP-4354-01A-02D-1366-10		49005842	142148434	8	19758											
GRIA2	2891	hgsc.bcm.edu;ucsc.edu	37	4	158254482	158254482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	158254482	C	A	158254482	3	1	318	1	0	0	0	0	1	0	0	0	6775	797	28	4	1162	4	GRIA2	4	158254482	Missense_Mutation	SNP	C	TCGA-BP-4354-01A-02D-1366-10	109248640	158254482	32899794	9	19759											
APC	324	hgsc.bcm.edu	37	5	112177788	112177788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	112177788	G	T	112177788	3	4	318	1	0	0	0	0	1	0	0	0	763	1058	37	4	6555	4	APC	5	112177788	Missense_Mutation	SNP	G	TCGA-BP-4354-01A-02D-1366-10		112177788	68737472	10	19760											
EGFR	1956	hgsc.bcm.edu	37	7	55259455	55259455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	C	55259455	T	C	55259455	3	2	318	1	0	0	0	0	1	0	0	0	4969	1580	55	3	2859	3	EGFR	7	55259455	Missense_Mutation	SNP	T	TCGA-BP-4354-01A-02D-1366-10		55259455	103879208	11	19761											
RP1	6101	hgsc.bcm.edu	37	8	55540233	55540233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	C	55540233	T	C	55540233	3	2	318	1	0	0	0	0	1	0	0	0	13545	1638	57	3	3801	3	RP1	8	55540233	Missense_Mutation	SNP	T	TCGA-BP-4354-01A-02D-1366-10		55540233	90823789	12	19762											
CPSF1	29894	hgsc.bcm.edu	37	8	145623779	145623779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	145623779	G	T	145623779	3	4	318	1	0	0	0	0	1	0	0	0	3826	1299	45	4	2604	4	CPSF1	8	145623779	Missense_Mutation	SNP	G	TCGA-BP-4354-01A-02D-1366-10	90083546	145623779	740243	13	19763											
FBXO10	26267	hgsc.bcm.edu	37	9	37537374	37537374	+	Silent	SNP	T	T	A	rs186419638	by1000genomes	TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	37537374	T	A	37537374	2	1	318	1	0	0	0	0	0	0	0	1	5733	1393	49	5		5	FBXO10	9	37537374	Silent	SNP	T	TCGA-BP-4354-01A-02D-1366-10		37537374	103676057	14	19764											
DNHD1	144132	hgsc.bcm.edu	37	11	6567893	6567893	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	C	6567893	G	C	6567893	3	2	318	1	0	0	0	0	1	0	0	0	4670	991	35	4	5807	4	DNHD1	11	6567893	Missense_Mutation	SNP	G	TCGA-BP-4354-01A-02D-1366-10		6567893	128438623	15	19765											
ST3GAL4	6484	hgsc.bcm.edu;ucsc.edu	37	11	126283465	126283465	+	Silent	SNP	C	C	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	126283465	C	T	126283465	2	4	318	1	0	0	0	0	0	0	0	1	15229	639	23	1		1	ST3GAL4	11	126283465	Silent	SNP	C	TCGA-BP-4354-01A-02D-1366-10	119715572	126283465	8723051	16	19766											
ETNK1	55500	hgsc.bcm.edu;ucsc.edu	37	12	22826447	22826447	+	Silent	SNP	A	A	G	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	G	22826447	A	G	22826447	2	3	318	1	0	0	0	0	0	0	0	1	5275	407	15	3		3	ETNK1	12	22826447	Silent	SNP	A	TCGA-BP-4354-01A-02D-1366-10		22826447	111025448	17	19767											
ADAMTS20	80070	hgsc.bcm.edu;ucsc.edu	37	12	43777460	43777460	+	Silent	SNP	C	C	A	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	43777460	C	A	43777460	2	1	318	1	0	0	0	0	0	0	0	1	266	813	29	4		4	ADAMTS20	12	43777460	Silent	SNP	C	TCGA-BP-4354-01A-02D-1366-10	20951013	43777460	90074435	18	19768											
SHMT2	6472	hgsc.bcm.edu	37	12	57627119	57627119	+	Silent	SNP	C	C	A	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	57627119	C	A	57627119	2	1	318	1	0	0	0	0	0	0	0	1	14299	610	22	4		4	SHMT2	12	57627119	Silent	SNP	C	TCGA-BP-4354-01A-02D-1366-10	13849659	57627119	76224776	19	19769											
HCFC2	29915	hgsc.bcm.edu;ucsc.edu	37	12	104461864	104461864	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	C	104461864	A	C	104461864	3	2	318	1	0	0	0	0	1	0	0	0	7000	333	12	5	462	5	HCFC2	12	104461864	Missense_Mutation	SNP	A	TCGA-BP-4354-01A-02D-1366-10	46834745	104461864	29390031	20	19770											
SLC10A2	6555	hgsc.bcm.edu	37	13	103718249	103718249	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	103718249	A	T	103718249	4	4	318	1	0	0	0	0	0	1	0	0	14387	108	4	5	719	5	SLC10A2	13	103718249	Nonsense_Mutation	SNP	A	TCGA-BP-4354-01A-02D-1366-10		103718249	11451629	21	19771											
TGM1	7051	hgsc.bcm.edu	37	14	24729679	24729679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	G	24729679	A	G	24729679	3	3	318	1	0	0	0	0	1	0	0	0	15841	333	12	3	1767	3	TGM1	14	24729679	Missense_Mutation	SNP	A	TCGA-BP-4354-01A-02D-1366-10		24729679	82619861	22	19772											
HERC1	8925	hgsc.bcm.edu;ucsc.edu	37	15	64005710	64005710	+	Silent	SNP	C	C	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	64005710	C	T	64005710	2	4	318	1	0	0	0	0	0	0	0	1	7064	680	24	2		2	HERC1	15	64005710	Silent	SNP	C	TCGA-BP-4354-01A-02D-1366-10		64005710	38525682	23	19773											
CASKIN1	57524	hgsc.bcm.edu	37	16	2236740	2236740	+	Missense_Mutation	SNP	G	G	A	rs141907746		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	2236740	G	A	2236740	3	1	318	1	0	0	0	0	1	0	0	0	2668	1174	41	2	3323	2	CASKIN1	16	2236740	Missense_Mutation	SNP	G	TCGA-BP-4354-01A-02D-1366-10		2236740	88118013	24	19774											
BCAS3	54828	hgsc.bcm.edu;ucsc.edu	37	17	58952032	58952032	+	Silent	SNP	C	C	A	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	58952032	C	A	58952032	2	1	318	1	0	0	0	0	0	0	0	1	1352	871	31	4		4	BCAS3	17	58952032	Silent	SNP	C	TCGA-BP-4354-01A-02D-1366-10		58952032	22243178	25	19775											
MUC16	94025	hgsc.bcm.edu	37	19	9085330	9085330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	C	9085330	T	C	9085330	3	2	318	1	0	0	0	0	1	0	0	0	9980	1551	54	3	37374	3	MUC16	19	9085330	Missense_Mutation	SNP	T	TCGA-BP-4354-01A-02D-1366-10		9085330	50043653	26	19776											
SYT5	6861	hgsc.bcm.edu	37	19	55690359	55690359	+	Silent	SNP	G	G	A	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	55690359	G	A	55690359	2	1	318	1	0	0	0	0	0	0	0	1	15489	1103	39	1		1	SYT5	19	55690359	Silent	SNP	G	TCGA-BP-4354-01A-02D-1366-10	46605029	55690359	3438624	27	19777											
LAMA5	3911	hgsc.bcm.edu	37	20	60906109	60906109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	C	60906109	T	C	60906109	3	2	318	1	0	0	0	0	1	0	0	0	8616	1696	59	3	7666	3	LAMA5	20	60906109	Missense_Mutation	SNP	T	TCGA-BP-4354-01A-02D-1366-10		60906109	2119411	28	19778											
USP18	11274	hgsc.bcm.edu	37	22	18640560	18640560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	18640560	C	A	18640560	3	1	318	1	0	0	0	0	1	0	0	0	17061	768	27	4	132	4	USP18	22	18640560	Missense_Mutation	SNP	C	TCGA-BP-4354-01A-02D-1366-10		18640560	32664006	29	19779											
NRK	203447	hgsc.bcm.edu;ucsc.edu	37	X	105197102	105197102	+	Silent	SNP	G	G	A	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	A	105197102	G	A	105197102	2	1	318	1	0	0	0	0	0	0	0	1	10662	1335	47	2		2	NRK	23	105197102	Silent	SNP	G	TCGA-BP-4354-01A-02D-1366-10		105197102	50073458	30	19780											
GABRQ	55879	hgsc.bcm.edu;ucsc.edu	37	X	151808916	151808916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4354-01A-02D-1366-10	TCGA-BP-4354-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	48897095-d6f8-481a-9dfb-b1d1e6b4c723	ee2d7355-8f21-4626-9979-9dcf6d03a88e	T	151808916	C	T	151808916	3	4	318	1	0	0	0	0	1	0	0	0	6182	652	23	1	233	1	GABRQ	23	151808916	Missense_Mutation	SNP	C	TCGA-BP-4354-01A-02D-1366-10	46611814	151808916	3461644	31	19781											
HSPG2	3339	hgsc.bcm.edu	37	1	22191827	22191827	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	C	22191827	G	C	22191827	3	2	319	1	0	0	0	0	1	0	0	0	7437	1348	47	4	9081	4	HSPG2	1	22191827	Missense_Mutation	SNP	G	TCGA-BP-4355-01A-01D-1366-10		22191827	227058794	1	19782											
CD1D	912	hgsc.bcm.edu	37	1	158151840	158151840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	C	158151840	T	C	158151840	3	2	319	1	0	0	0	0	1	0	0	0	2979	1696	59	3	357	3	CD1D	1	158151840	Missense_Mutation	SNP	T	TCGA-BP-4355-01A-01D-1366-10	135960013	158151840	91098781	2	19783											
LGTN	100529141	hgsc.bcm.edu;ucsc.edu	37	1	206776436	206776436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	G	206776436	A	G	206776436	3	3	319	1	0	0	0	0	1	0	0	0	8767	217	8	3	1141	3	LGTN	1	206776436	Missense_Mutation	SNP	A	TCGA-BP-4355-01A-01D-1366-10	48624596	206776436	42474185	3	19784											
KCNS3	3790	hgsc.bcm.edu	37	2	18113407	18113407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	T	18113407	C	T	18113407	3	4	319	1	0	0	0	0	1	0	0	0	8097	623	22	2	1134	2	KCNS3	2	18113407	Missense_Mutation	SNP	C	TCGA-BP-4355-01A-01D-1366-10		18113407	225085966	4	19785											
IKZF2	22807	hgsc.bcm.edu;ucsc.edu	37	2	213872194	213872194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	A	213872194	C	A	213872194	3	1	319	1	0	0	0	0	1	0	0	0	7622	623	22	4	113	4	IKZF2	2	213872194	Missense_Mutation	SNP	C	TCGA-BP-4355-01A-01D-1366-10	195758787	213872194	29327179	5	19786											
VHL	7428	hgsc.bcm.edu	37	3	10188244	10188244	+	Silent	SNP	G	G	T	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	T	10188244	G	T	10188244	2	4	319	1	0	0	0	0	0	0	0	1	17174	1335	47	4		4	VHL	3	10188244	Silent	SNP	G	TCGA-BP-4355-01A-01D-1366-10		10188244	187834186	6	19787											
BAP1	8314	hgsc.bcm.edu	37	3	52442585	52442585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	T	52442585	C	T	52442585	3	4	319	1	0	0	0	0	1	0	0	0	1311	893	31	1	2085	1	BAP1	3	52442585	Missense_Mutation	SNP	C	TCGA-BP-4355-01A-01D-1366-10	42254341	52442585	145579845	7	19788											
KIT	3815	hgsc.bcm.edu	37	4	55593631	55593631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	G	55593631	A	G	55593631	3	3	319	1	0	0	0	0	1	0	0	0	8336	43	2	3	1739	3	KIT	4	55593631	Missense_Mutation	SNP	A	TCGA-BP-4355-01A-01D-1366-10		55593631	135560645	8	19789											
TSPAN17	26262	hgsc.bcm.edu	37	5	176083768	176083768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	G	176083768	A	G	176083768	3	3	319	1	0	0	0	0	1	0	0	0	16653	275	10	3	733	3	TSPAN17	5	176083768	Missense_Mutation	SNP	A	TCGA-BP-4355-01A-01D-1366-10		176083768	4831492	9	19790											
NDRG1	10397	hgsc.bcm.edu;ucsc.edu	37	8	134296522	134296522	+	Silent	SNP	A	A	T	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	T	134296522	A	T	134296522	2	4	319	1	0	0	0	0	0	0	0	1	10258	175	7	5		5	NDRG1	8	134296522	Silent	SNP	A	TCGA-BP-4355-01A-01D-1366-10		134296522	12067500	10	19791											
IFNA1	3439	hgsc.bcm.edu	37	9	21440579	21440579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	A	21440579	G	A	21440579	3	1	319	1	0	0	0	0	1	0	0	0	7538	1290	45	2	75	2	IFNA1	9	21440579	Missense_Mutation	SNP	G	TCGA-BP-4355-01A-01D-1366-10		21440579	119772852	11	19792											
ERBB3	2065	hgsc.bcm.edu;ucsc.edu	37	12	56477580	56477580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	G	56477580	A	G	56477580	3	3	319	1	0	0	0	0	1	0	0	0	5210	304	11	3	134	3	ERBB3	12	56477580	Missense_Mutation	SNP	A	TCGA-BP-4355-01A-01D-1366-10		56477580	77374315	12	19793											
FARP1	10160	hgsc.bcm.edu;ucsc.edu	37	13	98896767	98896767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	A	98896767	T	A	98896767	3	1	319	1	0	0	0	0	1	0	0	0	5683	1551	54	5	200	5	FARP1	13	98896767	Missense_Mutation	SNP	T	TCGA-BP-4355-01A-01D-1366-10		98896767	16273111	13	19794											
CDH4	1002	hgsc.bcm.edu	37	20	60419771	60419771	+	Silent	SNP	G	G	T	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	T	60419771	G	T	60419771	2	4	319	1	0	0	0	0	0	0	0	1	3114	1103	39	4		4	CDH4	20	60419771	Silent	SNP	G	TCGA-BP-4355-01A-01D-1366-10		60419771	2605749	14	19795											
MX2	4600	hgsc.bcm.edu;ucsc.edu	37	21	42771182	42771182	+	Silent	SNP	G	G	A	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	A	42771182	G	A	42771182	2	1	319	1	0	0	0	0	0	0	0	1	10005	1223	43	2		2	MX2	21	42771182	Silent	SNP	G	TCGA-BP-4355-01A-01D-1366-10		42771182	5358713	15	19796											
L1CAM	3897	hgsc.bcm.edu	37	X	153131183	153131183	+	Silent	SNP	G	G	A	novel		TCGA-BP-4355-01A-01D-1366-10	TCGA-BP-4355-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2661143d-1dbb-441d-aaae-a985fab1f7b3	55d14726-2b71-4df9-900b-01d973e2c054	A	153131183	G	A	153131183	2	1	319	1	0	0	0	0	0	0	0	1	8595	1277	45	2		2	L1CAM	23	153131183	Silent	SNP	G	TCGA-BP-4355-01A-01D-1366-10		153131183	2139377	16	19797											
VHL	7428	hgsc.bcm.edu	37	3	10183748	10183748	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4355-01A-01W-1362-10	TCGA-BP-4355-11A-01W-1363-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	e183f6ca-cc02-42ce-85ba-cad6e78f9f40	9d979529-ef8a-4af7-839e-ae8e4dca629f	T	10183748	C	T	10183748	4	4	320	1	0	0	0	0	0	1	0	0	17174	595	21	2	219	2	VHL	3	10183748	Nonsense_Mutation	SNP	C	TCGA-BP-4355-01A-01W-1362-10		10183748	187838682	1	19798											
ST6GALNAC3	256435	hgsc.bcm.edu;ucsc.edu	37	1	77094396	77094396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	77094396	G	A	77094396	3	1	321	1	0	0	0	0	1	0	0	0	15237	1348	47	2	855	2	ST6GALNAC3	1	77094396	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10		77094396	172156225	1	19799											
AGL	178	hgsc.bcm.edu;ucsc.edu	37	1	100343224	100343225	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	TA	100343225	-	TA	100343224	7	5	321	1	0	1	1	0	0	0	0	0	384	1609	56	0	1562	0	AGL	1	100343224	Frame_Shift_Ins	INS	-	TCGA-BP-4756-01A-01D-1366-10	23248828	100343224	148907397	2	19800											
MAGI3	260425	hgsc.bcm.edu;ucsc.edu	37	1	114157263	114157263	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	114157263	T	A	114157263	4	1	321	1	0	0	0	0	0	1	0	0	9199	1471	51	5	1085	5	MAGI3	1	114157263	Nonsense_Mutation	SNP	T	TCGA-BP-4756-01A-01D-1366-10	13814039	114157263	135093358	3	19801											
CACNA1S	779	hgsc.bcm.edu	37	1	201058500	201058500	+	Silent	SNP	C	C	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	201058500	C	A	201058500	2	1	321	1	0	0	0	0	0	0	0	1	2549	610	22	4		4	CACNA1S	1	201058500	Silent	SNP	C	TCGA-BP-4756-01A-01D-1366-10	86901237	201058500	48192121	4	19802											
IFT172	26160	hgsc.bcm.edu;ucsc.edu	37	2	27671791	27671791	+	Silent	SNP	A	A	G	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	27671791	A	G	27671791	2	3	321	1	0	0	0	0	0	0	0	1	7564	407	15	3		3	IFT172	2	27671791	Silent	SNP	A	TCGA-BP-4756-01A-01D-1366-10		27671791	215527582	5	19803											
OXER1	165140	hgsc.bcm.edu;ucsc.edu	37	2	42991163	42991163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	42991163	A	G	42991163	3	3	321	1	0	0	0	0	1	0	0	0	11338	304	11	3	1118	3	OXER1	2	42991163	Missense_Mutation	SNP	A	TCGA-BP-4756-01A-01D-1366-10	15319372	42991163	200208210	6	19804											
EHBP1	23301	hgsc.bcm.edu;ucsc.edu	37	2	63175596	63175596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	63175596	G	A	63175596	3	1	321	1	0	0	0	0	1	0	0	0	4977	942	33	2	1770	2	EHBP1	2	63175596	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10	20184433	63175596	180023777	7	19805											
CCBP2	1238	hgsc.bcm.edu;ucsc.edu	37	3	42906057	42906057	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	42906057	C	G	42906057	3	3	321	1	0	0	0	0	1	0	0	0	2736	796	28	4	65	4	CCBP2	3	42906057	Missense_Mutation	SNP	C	TCGA-BP-4756-01A-01D-1366-10		42906057	155116373	8	19806											
C3orf75	0	hgsc.bcm.edu;ucsc.edu	37	3	47551730	47551730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	47551730	A	G	47551730	3	3	321	1	0	0	0	0	1	0	0	0	2247	188	7	3	672	3	C3orf75	3	47551730	Missense_Mutation	SNP	A	TCGA-BP-4756-01A-01D-1366-10	4645673	47551730	150470700	9	19807											
USP4	7375	hgsc.bcm.edu;ucsc.edu	37	3	49321434	49321434	+	Silent	SNP	T	T	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	49321434	T	A	49321434	2	1	321	1	0	0	0	0	0	0	0	1	17083	1509	53	5		5	USP4	3	49321434	Silent	SNP	T	TCGA-BP-4756-01A-01D-1366-10	1769704	49321434	148700996	10	19808											
ACOX2	8309	hgsc.bcm.edu	37	3	58512375	58512375	+	Silent	SNP	T	T	C	rs1127743	bycluster;byfrequency;by1000genomes	TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	C	58512375	T	C	58512375	2	2	321	1	0	0	0	0	0	0	0	1	159	1683	59	3		3	ACOX2	3	58512375	Silent	SNP	T	TCGA-BP-4756-01A-01D-1366-10	9190941	58512375	139510055	11	19809											
GOLGB1	2804	hgsc.bcm.edu;ucsc.edu	37	3	121415214	121415214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	121415214	T	A	121415214	3	1	321	1	0	0	0	0	1	0	0	0	6572	1493	52	5	5678	5	GOLGB1	3	121415214	Missense_Mutation	SNP	T	TCGA-BP-4756-01A-01D-1366-10	62902839	121415214	76607216	12	19810											
NFXL1	152518	hgsc.bcm.edu;ucsc.edu	37	4	47892656	47892656	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	47892656	T	G	47892656	3	3	321	1	0	0	0	0	1	0	0	0	10395	1464	51	5	1266	5	NFXL1	4	47892656	Missense_Mutation	SNP	T	TCGA-BP-4756-01A-01D-1366-10		47892656	143261620	13	19811											
EDNRA	1909	hgsc.bcm.edu;ucsc.edu	37	4	148463689	148463689	+	Silent	SNP	C	C	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	148463689	C	T	148463689	2	4	321	1	0	0	0	0	0	0	0	1	4921	535	19	1		1	EDNRA	4	148463689	Silent	SNP	C	TCGA-BP-4756-01A-01D-1366-10	100571033	148463689	42690587	14	19812											
SLC35A4	113829	hgsc.bcm.edu	37	5	139946945	139946946	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	139946946	-	A	139946945	7	5	321	1	0	1	1	0	0	0	0	0	14586	1764	61	0	193	0	SLC35A4	5	139946945	Frame_Shift_Ins	INS	-	TCGA-BP-4756-01A-01D-1366-10		139946945	40968315	15	19813											
AKR1B1	231	hgsc.bcm.edu	37	7	134136494	134136494	+	Silent	SNP	C	C	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	134136494	C	A	134136494	2	1	321	1	0	0	0	0	0	0	0	1	466	726	26	4		4	AKR1B1	7	134136494	Silent	SNP	C	TCGA-BP-4756-01A-01D-1366-10		134136494	25002169	16	19814											
SLC37A3	84255	hgsc.bcm.edu;ucsc.edu	37	7	140035229	140035229	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	140035229	G	T	140035229	4	4	321	1	0	0	0	0	0	1	0	0	14612	1294	45	4	169	4	SLC37A3	7	140035229	Nonsense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10	5898735	140035229	19103434	17	19815											
MLL3	58508	hgsc.bcm.edu;ucsc.edu	37	7	151882665	151882665	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	151882665	G	T	151882665	4	4	321	1	0	0	0	0	0	1	0	0	9629	1294	45	4	9779	4	MLL3	7	151882665	Nonsense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10	11847436	151882665	7255998	18	19816											
TG	7038	hgsc.bcm.edu	37	8	133941401	133941401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	133941401	C	T	133941401	3	4	321	1	0	0	0	0	1	0	0	0	15825	855	30	2	4870	2	TG	8	133941401	Missense_Mutation	SNP	C	TCGA-BP-4756-01A-01D-1366-10		133941401	12422621	19	19817											
SECISBP2	79048	hgsc.bcm.edu	37	9	91964776	91964776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	91964776	C	G	91964776	3	3	321	1	0	0	0	0	1	0	0	0	14019	477	17	4	1874	4	SECISBP2	9	91964776	Missense_Mutation	SNP	C	TCGA-BP-4756-01A-01D-1366-10		91964776	49248655	20	19818											
DPM2	8818	hgsc.bcm.edu;ucsc.edu	37	9	130698858	130698858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	130698858	G	A	130698858	3	1	321	1	0	0	0	0	1	0	0	0	4727	1319	46	2	92	2	DPM2	9	130698858	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10	38734082	130698858	10514573	21	19819											
MYST4	0	hgsc.bcm.edu;ucsc.edu	37	10	76788758	76788758	+	Silent	SNP	A	A	G	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	76788758	A	G	76788758	2	3	321	1	0	0	0	0	0	0	0	1	10112	40	2	3		3	MYST4	10	76788758	Silent	SNP	A	TCGA-BP-4756-01A-01D-1366-10		76788758	58745989	22	19820											
POLL	27343	hgsc.bcm.edu;ucsc.edu	37	10	103345150	103345150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	C	103345150	G	C	103345150	3	2	321	1	0	0	0	0	1	0	0	0	12212	1000	35	4	1255	4	POLL	10	103345150	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10	26556392	103345150	32189597	23	19821											
MGEA5	10724	hgsc.bcm.edu	37	10	103547234	103547234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	103547234	G	T	103547234	3	4	321	1	0	0	0	0	1	0	0	0	9562	1029	36	4	257	4	MGEA5	10	103547234	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10	202084	103547234	31987513	24	19822											
PNLIPRP3	119548	hgsc.bcm.edu;ucsc.edu	37	10	118228715	118228715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	C	118228715	T	C	118228715	3	2	321	1	0	0	0	0	1	0	0	0	12159	1783	62	3	980	3	PNLIPRP3	10	118228715	Missense_Mutation	SNP	T	TCGA-BP-4756-01A-01D-1366-10	14681481	118228715	17306032	25	19823											
SLC22A25	387601	hgsc.bcm.edu	37	11	62984813	62984813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	62984813	G	A	62984813	3	1	321	1	0	0	0	0	1	0	0	0	14467	1348	47	2	864	2	SLC22A25	11	62984813	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10		62984813	72021703	26	19824											
ODZ4	0	hgsc.bcm.edu;ucsc.edu	37	11	78565192	78565192	+	Silent	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	78565192	G	A	78565192	2	1	321	1	0	0	0	0	0	0	0	1	10844	1136	40	1		1	ODZ4	11	78565192	Silent	SNP	G	TCGA-BP-4756-01A-01D-1366-10	15580379	78565192	56441324	27	19825											
BIRC2	329	hgsc.bcm.edu;ucsc.edu	37	11	102239263	102239263	+	Silent	SNP	T	T	C	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	C	102239263	T	C	102239263	2	2	321	1	0	0	0	0	0	0	0	1	1435	1567	55	3		3	BIRC2	11	102239263	Silent	SNP	T	TCGA-BP-4756-01A-01D-1366-10	23674071	102239263	32767253	28	19826											
ASB8	140461	hgsc.bcm.edu;ucsc.edu	37	12	48547222	48547222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	48547222	C	T	48547222	3	4	321	1	0	0	0	0	1	0	0	0	1029	893	31	1	820	1	ASB8	12	48547222	Missense_Mutation	SNP	C	TCGA-BP-4756-01A-01D-1366-10		48547222	85304673	29	19827											
KRT76	51350	hgsc.bcm.edu	37	12	53162773	53162773	+	Silent	SNP	A	A	G	rs1464423	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	53162773	A	G	53162773	2	3	321	1	0	0	0	0	0	0	0	1	8496	156	6	3		3	KRT76	12	53162773	Silent	SNP	A	TCGA-BP-4756-01A-01D-1366-10	4615551	53162773	80689122	30	19828											
KRT4	3851	hgsc.bcm.edu	37	12	53207576	53207576	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	53207576	A	T	53207576	3	4	321	1	0	0	0	0	1	0	0	0	8484	127	5	5	1331	5	KRT4	12	53207576	Missense_Mutation	SNP	A	TCGA-BP-4756-01A-01D-1366-10	44803	53207576	80644319	31	19829											
MSRB3	253827	hgsc.bcm.edu;ucsc.edu	37	12	65856991	65856991	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	65856991	A	T	65856991	3	4	321	1	0	0	0	0	1	0	0	0	9896	330	12	5	570	5	MSRB3	12	65856991	Missense_Mutation	SNP	A	TCGA-BP-4756-01A-01D-1366-10	12649415	65856991	67994904	32	19830											
VSIG10	54621	hgsc.bcm.edu	37	12	118506355	118506355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	C	118506355	T	C	118506355	3	2	321	1	0	0	0	0	1	0	0	0	17235	1783	62	3	236	3	VSIG10	12	118506355	Missense_Mutation	SNP	T	TCGA-BP-4756-01A-01D-1366-10	52649364	118506355	15345540	33	19831											
CLIP1	6249	hgsc.bcm.edu;ucsc.edu	37	12	122812845	122812845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	122812845	T	A	122812845	3	1	321	1	0	0	0	0	1	0	0	0	3534	1783	62	5	1364	5	CLIP1	12	122812845	Missense_Mutation	SNP	T	TCGA-BP-4756-01A-01D-1366-10	4306490	122812845	11039050	34	19832											
DHRS2	10202	hgsc.bcm.edu	37	14	24108525	24108525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	24108525	A	G	24108525	3	3	321	1	0	0	0	0	1	0	0	0	4492	159	6	3	284	3	DHRS2	14	24108525	Missense_Mutation	SNP	A	TCGA-BP-4756-01A-01D-1366-10		24108525	83241015	35	19833											
MTHFD1	4522	hgsc.bcm.edu	37	14	64891605	64891605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	64891605	G	T	64891605	3	4	321	1	0	0	0	0	1	0	0	0	9934	1377	48	4	845	4	MTHFD1	14	64891605	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10	40783080	64891605	42457935	36	19834											
RAGE	0	hgsc.bcm.edu;ucsc.edu	37	14	102699021	102699021	+	Missense_Mutation	SNP	A	A	C	rs144699014	alternate_allele	TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	C	102699021	A	C	102699021	3	2	321	1	0	0	0	0	1	0	0	0	13019	243	9	5	558	5	RAGE	14	102699021	Missense_Mutation	SNP	A	TCGA-BP-4756-01A-01D-1366-10	37807416	102699021	4650519	37	19835											
ZSCAN2	54993	hgsc.bcm.edu	37	15	85164205	85164205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	85164205	G	T	85164205	3	4	321	1	0	0	0	0	1	0	0	0	18243	1029	36	4	875	4	ZSCAN2	15	85164205	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10		85164205	17367187	38	19836											
RANBP10	57610	hgsc.bcm.edu	37	16	67763369	67763369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	67763369	C	T	67763369	3	4	321	1	0	0	0	0	1	0	0	0	13039	478	17	2	716	2	RANBP10	16	67763369	Missense_Mutation	SNP	C	TCGA-BP-4756-01A-01D-1366-10		67763369	22591384	39	19837											
RPH3AL	9501	hgsc.bcm.edu	37	17	171082	171082	+	Silent	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	171082	G	A	171082	2	1	321	1	0	0	0	0	0	0	0	1	13565	991	35	2		2	RPH3AL	17	171082	Silent	SNP	G	TCGA-BP-4756-01A-01D-1366-10		171082	81024128	40	19838											
GRB7	2886	hgsc.bcm.edu	37	17	37903011	37903011	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	C	37903011	A	C	37903011	3	2	321	1	0	0	0	0	1	0	0	0	6766	304	11	5	1514	5	GRB7	17	37903011	Missense_Mutation	SNP	A	TCGA-BP-4756-01A-01D-1366-10	37731929	37903011	43292199	41	19839											
SLC25A19	60386	hgsc.bcm.edu	37	17	73279618	73279618	+	Silent	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	73279618	G	A	73279618	2	1	321	1	0	0	0	0	0	0	0	1	14494	1219	43	2		2	SLC25A19	17	73279618	Silent	SNP	G	TCGA-BP-4756-01A-01D-1366-10	35376607	73279618	7915592	42	19840											
CCDC57	284001	hgsc.bcm.edu	37	17	80130525	80130525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	80130525	G	A	80130525	3	1	321	1	0	0	0	0	1	0	0	0	2829	1203	42	2	1057	2	CCDC57	17	80130525	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10	6850907	80130525	1064685	43	19841											
TYK2	7297	hgsc.bcm.edu	37	19	10468470	10468470	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	G	10468470	C	G	10468470	3	3	321	1	0	0	0	0	1	0	0	0	16822	680	24	4	1163	4	TYK2	19	10468470	Missense_Mutation	SNP	C	TCGA-BP-4756-01A-01D-1366-10		10468470	48660513	44	19842											
ARHGAP8	23779	hgsc.bcm.edu	37	22	45255656	45255656	+	Missense_Mutation	SNP	G	G	T	rs148303608	alternate_allele	TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	T	45255656	G	T	45255656	3	4	321	1	0	0	0	0	1	0	0	0	888	1116	39	4	1058	4	ARHGAP8	22	45255656	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10		45255656	6048910	45	19843											
CLCN5	1184	hgsc.bcm.edu;ucsc.edu	37	X	49853520	49853520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	49853520	G	A	49853520	3	1	321	1	0	0	0	0	1	0	0	0	3468	1261	44	2	1761	2	CLCN5	23	49853520	Missense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10		49853520	105417040	46	19844											
ACTRT1	139741	hgsc.bcm.edu;ucsc.edu	37	X	127185831	127185831	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	127185831	G	A	127185831	4	1	321	1	0	0	0	0	0	1	0	0	218	1066	37	1	779	1	ACTRT1	23	127185831	Nonsense_Mutation	SNP	G	TCGA-BP-4756-01A-01D-1366-10	77332311	127185831	28084729	47	19845											
SAGE1	55511	hgsc.bcm.edu;ucsc.edu	37	X	134992605	134992605	+	Silent	SNP	G	G	A	novel		TCGA-BP-4756-01A-01D-1366-10	TCGA-BP-4756-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7ff2eeb7-4f50-4365-acca-4f67bc73fa38	7d113813-ebeb-4dfa-9fce-fa8f2aabab42	A	134992605	G	A	134992605	2	1	321	1	0	0	0	0	0	0	0	1	13822	933	33	2		2	SAGE1	23	134992605	Silent	SNP	G	TCGA-BP-4756-01A-01D-1366-10	7806774	134992605	20277955	48	19846											
UBR4	23352	hgsc.bcm.edu;ucsc.edu	37	1	19414403	19414403	+	Silent	SNP	G	G	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	19414403	G	A	19414403	2	1	322	1	0	0	0	0	0	0	0	1	16916	1045	37	1		1	UBR4	1	19414403	Silent	SNP	G	TCGA-BP-4758-01A-01D-1366-10		19414403	229836218	1	19847											
ZNF683	257101	hgsc.bcm.edu	37	1	26691355	26691355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	G	26691355	A	G	26691355	3	3	322	1	0	0	0	0	1	0	0	0	18102	420	15	3	844	3	ZNF683	1	26691355	Missense_Mutation	SNP	A	TCGA-BP-4758-01A-01D-1366-10	7276952	26691355	222559266	2	19848											
FGGY	55277	hgsc.bcm.edu	37	1	60139710	60139710	+	Splice_Site	SNP	G	G	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	60139710	G	C	60139710	5	2	322	1	0	0	0	0	0	0	1	0	5878	1014	35	4	1543	4	FGGY	1	60139710	Splice_Site	SNP	G	TCGA-BP-4758-01A-01D-1366-10	33448355	60139710	189110911	3	19849											
ATP1A1	476	hgsc.bcm.edu;ucsc.edu	37	1	116932279	116932279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	G	116932279	A	G	116932279	3	3	322	1	0	0	0	0	1	0	0	0	1128	217	8	3	1019	3	ATP1A1	1	116932279	Missense_Mutation	SNP	A	TCGA-BP-4758-01A-01D-1366-10	56792569	116932279	132318342	4	19850											
CHRNB2	1141	hgsc.bcm.edu;ucsc.edu	37	1	154544124	154544124	+	Silent	SNP	G	G	A	rs140739605		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	154544124	G	A	154544124	2	1	322	1	0	0	0	0	0	0	0	1	3393	1074	38	1		1	CHRNB2	1	154544124	Silent	SNP	G	TCGA-BP-4758-01A-01D-1366-10	37611845	154544124	94706497	5	19851											
GON4L	54856	hgsc.bcm.edu;ucsc.edu	37	1	155726848	155726848	+	Silent	SNP	C	C	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	155726848	C	A	155726848	2	1	322	1	0	0	0	0	0	0	0	1	6579	581	21	4		4	GON4L	1	155726848	Silent	SNP	C	TCGA-BP-4758-01A-01D-1366-10	1182724	155726848	93523773	6	19852											
FASLG	356	hgsc.bcm.edu	37	1	172635130	172635130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	G	172635130	A	G	172635130	3	3	322	1	0	0	0	0	1	0	0	0	5689	275	10	3	834	3	FASLG	1	172635130	Missense_Mutation	SNP	A	TCGA-BP-4758-01A-01D-1366-10	16908282	172635130	76615491	7	19853											
MUC13	56667	hgsc.bcm.edu	37	3	124646701	124646702	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	GAA	124646702	-	GAA	124646701	7	5	322	1	0	1	1	0	0	0	0	0	9978	1799	63	0	1386	0	MUC13	3	124646701	In_Frame_Ins	INS	-	TCGA-BP-4758-01A-01D-1366-10		124646701	73375729	8	19854											
NPHP3	27031	hgsc.bcm.edu;ucsc.edu	37	3	132433973	132433973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	132433973	T	C	132433973	3	2	322	1	0	0	0	0	1	0	0	0	10587	1464	51	3	3171	3	NPHP3	3	132433973	Missense_Mutation	SNP	T	TCGA-BP-4758-01A-01D-1366-10	7787272	132433973	65588457	9	19855											
NAA15	80155	hgsc.bcm.edu;ucsc.edu	37	4	140297620	140297620	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	140297620	T	A	140297620	3	1	322	1	0	0	0	0	1	0	0	0	10125	1751	61	5	2111	5	NAA15	4	140297620	Missense_Mutation	SNP	T	TCGA-BP-4758-01A-01D-1366-10		140297620	50856656	10	19856											
MAML3	55534	hgsc.bcm.edu;ucsc.edu	37	4	140646919	140646919	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	140646919	A	C	140646919	3	2	322	1	0	0	0	0	1	0	0	0	9214	275	10	5	1022	5	MAML3	4	140646919	Missense_Mutation	SNP	A	TCGA-BP-4758-01A-01D-1366-10	349299	140646919	50507357	11	19857											
SERINC5	256987	hgsc.bcm.edu;ucsc.edu	37	5	79465263	79465263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	G	79465263	A	G	79465263	3	3	322	1	0	0	0	0	1	0	0	0	14096	362	13	3	793	3	SERINC5	5	79465263	Missense_Mutation	SNP	A	TCGA-BP-4758-01A-01D-1366-10		79465263	101449997	12	19858											
BTNL9	153579	hgsc.bcm.edu	37	5	180481242	180481242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	180481242	A	C	180481242	3	2	322	1	0	0	0	0	1	0	0	0	1570	14	1	5	912	5	BTNL9	5	180481242	Missense_Mutation	SNP	A	TCGA-BP-4758-01A-01D-1366-10	101015979	180481242	434018	13	19859											
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32628022	32628022	+	Silent	SNP	A	A	G	rs1140347	bycluster;byfrequency;by1000genomes	TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	G	32628022	A	G	32628022	2	3	322	1	0	0	0	0	0	0	0	1	7213	233	9	3		3	HLA-DQB1	6	32628022	Silent	SNP	A	TCGA-BP-4758-01A-01D-1366-10		32628022	138487045	14	19860											
GRM1	2911	hgsc.bcm.edu;ucsc.edu	37	6	146720530	146720530	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	146720530	A	C	146720530	3	2	322	1	0	0	0	0	1	0	0	0	6803	98	4	5	2381	5	GRM1	6	146720530	Missense_Mutation	SNP	A	TCGA-BP-4758-01A-01D-1366-10	114092508	146720530	24394537	15	19861											
SMARCD3	6604	hgsc.bcm.edu;ucsc.edu	37	7	150938597	150938597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	T	150938597	C	T	150938597	3	4	322	1	0	0	0	0	1	0	0	0	14792	623	22	2	555	2	SMARCD3	7	150938597	Missense_Mutation	SNP	C	TCGA-BP-4758-01A-01D-1366-10		150938597	8200066	16	19862											
DPYSL2	1808	hgsc.bcm.edu;ucsc.edu	37	8	26509869	26509869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	G	26509869	C	G	26509869	3	3	322	1	0	0	0	0	1	0	0	0	4749	710	25	4	1424	4	DPYSL2	8	26509869	Missense_Mutation	SNP	C	TCGA-BP-4758-01A-01D-1366-10		26509869	119854153	17	19863											
HEMGN	55363	hgsc.bcm.edu;ucsc.edu	37	9	100693494	100693494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	100693494	T	A	100693494	3	1	322	1	0	0	0	0	1	0	0	0	7057	1838	64	5	1279	5	HEMGN	9	100693494	Missense_Mutation	SNP	T	TCGA-BP-4758-01A-01D-1366-10		100693494	40519937	18	19864											
CEP110	0	hgsc.bcm.edu;ucsc.edu	37	9	123860779	123860779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	T	123860779	C	T	123860779	3	4	322	1	0	0	0	0	1	0	0	0	3247	838	29	2	755	2	CEP110	9	123860779	Missense_Mutation	SNP	C	TCGA-BP-4758-01A-01D-1366-10	23167285	123860779	17352652	19	19865											
RABGAP1	23637	hgsc.bcm.edu;ucsc.edu	37	9	125777884	125777884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	125777884	C	A	125777884	3	1	322	1	0	0	0	0	1	0	0	0	12977	913	32	4	1654	4	RABGAP1	9	125777884	Missense_Mutation	SNP	C	TCGA-BP-4758-01A-01D-1366-10	1917105	125777884	15435547	20	19866											
ZNF485	220992	hgsc.bcm.edu;ucsc.edu	37	10	44111891	44111891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	44111891	G	A	44111891	3	1	322	1	0	0	0	0	1	0	0	0	17950	1175	41	2	414	2	ZNF485	10	44111891	Missense_Mutation	SNP	G	TCGA-BP-4758-01A-01D-1366-10		44111891	91422856	21	19867											
TMEM109	79073	hgsc.bcm.edu	37	11	60689459	60689459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	60689459	G	A	60689459	3	1	322	1	0	0	0	0	1	0	0	0	16037	1116	39	1	564	1	TMEM109	11	60689459	Missense_Mutation	SNP	G	TCGA-BP-4758-01A-01D-1366-10		60689459	74317057	22	19868											
ALKBH8	91801	hgsc.bcm.edu;ucsc.edu	37	11	107423862	107423863	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	T	107423863	-	T	107423862	7	5	322	1	0	1	1	0	0	0	0	0	533	214	8	0	1459	0	ALKBH8	11	107423862	Frame_Shift_Ins	INS	-	TCGA-BP-4758-01A-01D-1366-10	46734403	107423862	27582654	23	19869											
MAPKAPK5	8550	hgsc.bcm.edu;ucsc.edu	37	12	112305374	112305374	+	Splice_Site	SNP	A	A	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	112305374	A	C	112305374	5	2	322	1	0	0	0	0	0	0	1	0	9298	86	3	5	199	5	MAPKAPK5	12	112305374	Splice_Site	SNP	A	TCGA-BP-4758-01A-01D-1366-10		112305374	21546521	24	19870											
RNF10	9921	hgsc.bcm.edu;ucsc.edu	37	12	120995400	120995400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	T	120995400	G	T	120995400	3	4	322	1	0	0	0	0	1	0	0	0	13435	1319	46	4	904	4	RNF10	12	120995400	Missense_Mutation	SNP	G	TCGA-BP-4758-01A-01D-1366-10	8690026	120995400	12856495	25	19871											
STON2	85439	hgsc.bcm.edu;ucsc.edu	37	14	81744156	81744156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	T	81744156	C	T	81744156	3	4	322	1	0	0	0	0	1	0	0	0	15330	652	23	1	1224	1	STON2	14	81744156	Missense_Mutation	SNP	C	TCGA-BP-4758-01A-01D-1366-10		81744156	25605384	26	19872											
ZSCAN2	54993	hgsc.bcm.edu;ucsc.edu	37	15	85164823	85164823	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	85164823	G	C	85164823	3	2	322	1	0	0	0	0	1	0	0	0	18243	1203	42	4	1493	4	ZSCAN2	15	85164823	Missense_Mutation	SNP	G	TCGA-BP-4758-01A-01D-1366-10		85164823	17366569	27	19873											
WDR93	56964	hgsc.bcm.edu;ucsc.edu	37	15	90246244	90246244	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	90246244	G	C	90246244	3	2	322	1	0	0	0	0	1	0	0	0	17352	1001	35	4	373	4	WDR93	15	90246244	Missense_Mutation	SNP	G	TCGA-BP-4758-01A-01D-1366-10	5081421	90246244	12285148	28	19874											
ABR	29	hgsc.bcm.edu;ucsc.edu	37	17	994934	994934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	994934	C	A	994934	3	1	322	1	0	0	0	0	1	0	0	0	99	507	18	4	2157	4	ABR	17	994934	Missense_Mutation	SNP	C	TCGA-BP-4758-01A-01D-1366-10		994934	80200276	29	19875											
MAP2K3	5606	hgsc.bcm.edu	37	17	21215557	21215557	+	Missense_Mutation	SNP	G	G	A	rs35206134	bycluster;byfrequency;by1000genomes	TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	21215557	G	A	21215557	3	1	322	1	0	0	0	0	1	0	0	0	9245	1145	40	1	916	1	MAP2K3	17	21215557	Missense_Mutation	SNP	G	TCGA-BP-4758-01A-01D-1366-10	20220623	21215557	59979653	30	19876											
EZH1	2145	hgsc.bcm.edu;ucsc.edu	37	17	40854913	40854913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	40854913	T	C	40854913	3	2	322	1	0	0	0	0	1	0	0	0	5335	1551	54	3	86	3	EZH1	17	40854913	Missense_Mutation	SNP	T	TCGA-BP-4758-01A-01D-1366-10	19639356	40854913	40340297	31	19877											
ADAMTSL5	339366	hgsc.bcm.edu	37	19	1507322	1507322	+	Silent	SNP	C	C	T	rs151178039	bycluster;byfrequency;by1000genomes	TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	T	1507322	C	T	1507322	2	4	322	1	0	0	0	0	0	0	0	1	278	755	27	1		1	ADAMTSL5	19	1507322	Silent	SNP	C	TCGA-BP-4758-01A-01D-1366-10		1507322	57621661	32	19878											
ACSS2	55902	hgsc.bcm.edu;ucsc.edu	37	20	33501582	33501582	+	Silent	SNP	A	A	G	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	G	33501582	A	G	33501582	2	3	322	1	0	0	0	0	0	0	0	1	189	436	16	3		3	ACSS2	20	33501582	Silent	SNP	A	TCGA-BP-4758-01A-01D-1366-10		33501582	29523938	33	19879											
ZNFX1	57169	hgsc.bcm.edu;ucsc.edu	37	20	47869361	47869361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	47869361	G	A	47869361	3	1	322	1	0	0	0	0	1	0	0	0	18217	1232	43	2	2656	2	ZNFX1	20	47869361	Missense_Mutation	SNP	G	TCGA-BP-4758-01A-01D-1366-10	14367779	47869361	15156159	34	19880											
APCDD1L	164284	hgsc.bcm.edu	37	20	57036163	57036163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	C	57036163	T	C	57036163	3	2	322	1	0	0	0	0	1	0	0	0	766	1812	63	3	320	3	APCDD1L	20	57036163	Missense_Mutation	SNP	T	TCGA-BP-4758-01A-01D-1366-10	9166802	57036163	5989357	35	19881											
NCAM2	4685	hgsc.bcm.edu;ucsc.edu	37	21	22656694	22656694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	G	22656694	A	G	22656694	3	3	322	1	0	0	0	0	1	0	0	0	10210	246	9	3	321	3	NCAM2	21	22656694	Missense_Mutation	SNP	A	TCGA-BP-4758-01A-01D-1366-10		22656694	25473201	36	19882											
PRDM15	63977	hgsc.bcm.edu	37	21	43287445	43287445	+	Silent	SNP	G	G	A	novel		TCGA-BP-4758-01A-01D-1366-10	TCGA-BP-4758-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	325972d8-51f2-4a83-8a29-a3760a4e0cb3	cb80eb7a-de82-4852-8339-5d4ecf9d38d6	A	43287445	G	A	43287445	2	1	322	1	0	0	0	0	0	0	0	1	12466	933	33	2		2	PRDM15	21	43287445	Silent	SNP	G	TCGA-BP-4758-01A-01D-1366-10	20630751	43287445	4842450	37	19883											
VHL	7428	hgsc.bcm.edu	37	3	10183871	10183871	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4758-01A-01W-1362-10	TCGA-BP-4758-11A-01W-1363-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	77986546-a7bb-4425-8cd1-01c22bdcac6b	8bce1fd2-0c1c-4d91-8455-763c2888128d	-	10183871	G	-	10183871	7	5	323	1	0	1	0	1	0	0	0	0	17174	1014	35	0	342	0	VHL	3	10183871	Frame_Shift_Del	DEL	G	TCGA-BP-4758-01A-01W-1362-10		10183871	187838559	1	19884											
ATAD3C	219293	hgsc.bcm.edu	37	1	1396229	1396229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	1396229	G	T	1396229	3	4	324	1	0	0	0	0	1	0	0	0	1075	991	35	4	950	4	ATAD3C	1	1396229	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10		1396229	247854392	1	19885											
UBR4	23352	hgsc.bcm.edu	37	1	19501507	19501507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	19501507	A	G	19501507	3	3	324	1	0	0	0	0	1	0	0	0	16916	101	4	3	13101	3	UBR4	1	19501507	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	18105278	19501507	229749114	2	19886											
GDAP2	54834	hgsc.bcm.edu	37	1	118462880	118462880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	118462880	G	T	118462880	3	4	324	1	0	0	0	0	1	0	0	0	6316	971	34	4	1489	4	GDAP2	1	118462880	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	98961373	118462880	130787741	3	19887											
GPR161	23432	hgsc.bcm.edu	37	1	168073747	168073747	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	168073747	G	A	168073747	2	1	324	1	0	0	0	0	0	0	0	1	6672	1310	46	2		2	GPR161	1	168073747	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	49610867	168073747	81176874	4	19888											
CENPA	1058	hgsc.bcm.edu;ucsc.edu	37	2	27015008	27015008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	27015008	C	T	27015008	3	4	324	1	0	0	0	0	1	0	0	0	3228	855	30	2	116	2	CENPA	2	27015008	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10		27015008	216184365	5	19889											
PLEKHH2	130271	hgsc.bcm.edu	37	2	43991495	43991495	+	Silent	SNP	A	A	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	43991495	A	G	43991495	2	3	324	1	0	0	0	0	0	0	0	1	12084	117	5	3		3	PLEKHH2	2	43991495	Silent	SNP	A	TCGA-BP-4759-01A-01D-1366-10	16976487	43991495	199207878	6	19890											
GTF2A1L	11036	hgsc.bcm.edu;ucsc.edu	37	2	48896938	48896938	+	Silent	SNP	C	C	T	rs144474589	bycluster;by1000genomes	TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	48896938	C	T	48896938	2	4	324	1	0	0	0	0	0	0	0	1	6860	767	27	1		1	GTF2A1L	2	48896938	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10	4905443	48896938	194302435	7	19891											
PROC	5624	hgsc.bcm.edu	37	2	128184763	128184763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	128184763	G	T	128184763	3	4	324	1	0	0	0	0	1	0	0	0	12555	1319	46	4	787	4	PROC	2	128184763	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	79287825	128184763	115014610	8	19892											
CWC22	57703	hgsc.bcm.edu;ucsc.edu	37	2	180819021	180819021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	180819021	C	T	180819021	3	4	324	1	0	0	0	0	1	0	0	0	4070	826	29	2	1146	2	CWC22	2	180819021	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	52634258	180819021	62380352	9	19893											
CPS1	1373	hgsc.bcm.edu;ucsc.edu	37	2	211518750	211518750	+	Missense_Mutation	SNP	A	A	T	rs1129684	alternate_allele	TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	211518750	A	T	211518750	3	4	324	1	0	0	0	0	1	0	0	0	3825	318	11	5	3618	5	CPS1	2	211518750	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	30699729	211518750	31680623	10	19894											
LHFPL4	375323	hgsc.bcm.edu	37	3	9543917	9543917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	9543917	A	G	9543917	3	3	324	1	0	0	0	0	1	0	0	0	8774	159	6	3	25	3	LHFPL4	3	9543917	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10		9543917	188478513	11	19895											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47164514	47164514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	47164514	C	A	47164514	4	1	324	1	0	0	0	0	0	1	0	0	14144	632	22	4	6158	4	SETD2	3	47164514	Nonsense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	37620597	47164514	150857916	12	19896											
QRICH1	54870	hgsc.bcm.edu	37	3	49095139	49095139	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	49095139	T	A	49095139	3	1	324	1	0	0	0	0	1	0	0	0	12892	1812	63	5	1868	5	QRICH1	3	49095139	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10	1930625	49095139	148927291	13	19897											
PBRM1	55193	ucsc.edu	37	3	52651454	52651454	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	C	-	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	-	52651454	C	-	52651454	7	5	324	1	0	1	0	1	0	0	0	0	11498	507	18	0	3326	0	PBRM1	3	52651454	Frame_Shift_Del	DEL	C	TCGA-BP-4759-01A-01D-1366-10	3556315	52651454	145370976	14	19898											
MXD4	10608	hgsc.bcm.edu	37	4	2254228	2254228	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	2254228	G	A	2254228	2	1	324	1	0	0	0	0	0	0	0	1	10008	1256	44	2		2	MXD4	4	2254228	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10		2254228	188900048	15	19899											
ZFR	51663	hgsc.bcm.edu;ucsc.edu	37	5	32355948	32355948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	32355948	C	T	32355948	3	4	324	1	0	0	0	0	1	0	0	0	17671	681	24	2	85	2	ZFR	5	32355948	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10		32355948	148559312	16	19900											
SLC25A2	83884	hgsc.bcm.edu;ucsc.edu	37	5	140682766	140682766	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	140682766	G	A	140682766	2	1	324	1	0	0	0	0	0	0	0	1	14495	991	35	2		2	SLC25A2	5	140682766	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	108326818	140682766	40232494	17	19901											
SLC36A2	153201	hgsc.bcm.edu;ucsc.edu	37	5	150704898	150704898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	150704898	C	T	150704898	3	4	324	1	0	0	0	0	1	0	0	0	14607	652	23	1	504	1	SLC36A2	5	150704898	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	10022132	150704898	30210362	18	19902											
HLA-C	3107	hgsc.bcm.edu	37	6	31237817	31237817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	31237817	C	A	31237817	3	1	324	1	0	0	0	0	1	0	0	0	7204	739	26	4	175	4	HLA-C	6	31237817	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10		31237817	139877250	19	19903											
DOM3Z	1797	hgsc.bcm.edu;ucsc.edu	37	6	31939209	31939209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	31939209	A	C	31939209	3	2	324	1	0	0	0	0	1	0	0	0	4707	72	3	5	970	5	DOM3Z	6	31939209	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	701392	31939209	139175858	20	19904											
KCNK16	83795	hgsc.bcm.edu	37	6	39285598	39285598	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	39285598	G	A	39285598	2	1	324	1	0	0	0	0	0	0	0	1	8070	1335	47	2		2	KCNK16	6	39285598	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	7346389	39285598	131829469	21	19905											
EEF1A1	1915	hgsc.bcm.edu;ucsc.edu	37	6	74228564	74228564	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	74228564	C	T	74228564	4	4	324	1	0	0	0	0	0	1	0	0	4925	595	21	2	775	2	EEF1A1	6	74228564	Nonsense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	34942966	74228564	96886503	22	19906											
SEMA3D	223117	hgsc.bcm.edu;ucsc.edu	37	7	84710863	84710863	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	84710863	T	G	84710863	3	3	324	1	0	0	0	0	1	0	0	0	14040	1490	52	5	2048	5	SEMA3D	7	84710863	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10		84710863	74427800	23	19907											
TSPAN33	340348	hgsc.bcm.edu	37	7	128802362	128802362	+	Silent	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	128802362	G	T	128802362	2	4	324	1	0	0	0	0	0	0	0	1	16660	1130	39	4		4	TSPAN33	7	128802362	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	44091499	128802362	30336301	24	19908											
KIAA1967	57805	hgsc.bcm.edu	37	8	22463673	22463673	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	22463673	A	C	22463673	3	2	324	1	0	0	0	0	1	0	0	0	8272	101	4	5	140	5	KIAA1967	8	22463673	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10		22463673	123900349	25	19909											
RBPMS	11030	hgsc.bcm.edu	37	8	30332299	30332299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	30332299	G	T	30332299	3	4	324	1	0	0	0	0	1	0	0	0	13176	1116	39	4	77	4	RBPMS	8	30332299	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	7868626	30332299	116031723	26	19910											
MATN2	4147	hgsc.bcm.edu;ucsc.edu	37	8	99028832	99028832	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	99028832	G	A	99028832	2	1	324	1	0	0	0	0	0	0	0	1	9341	1132	40	1		1	MATN2	8	99028832	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	68696533	99028832	47335190	27	19911											
SYBU	55638	hgsc.bcm.edu;ucsc.edu	37	8	110590177	110590177	+	Silent	SNP	C	C	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	110590177	C	T	110590177	2	4	324	1	0	0	0	0	0	0	0	1	15439	825	29	2		2	SYBU	8	110590177	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10	11561345	110590177	35773845	28	19912											
TBC1D13	54662	hgsc.bcm.edu	37	9	131553914	131553914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	131553914	C	A	131553914	3	1	324	1	0	0	0	0	1	0	0	0	15614	681	24	4	260	4	TBC1D13	9	131553914	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10		131553914	9659517	29	19913											
GPSM1	26086	hgsc.bcm.edu	37	9	139234168	139234168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	139234168	G	A	139234168	3	1	324	1	0	0	0	0	1	0	0	0	6741	1232	43	2	1009	2	GPSM1	9	139234168	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	7680254	139234168	1979263	30	19914											
AGPAT2	10555	hgsc.bcm.edu	37	9	139568309	139568309	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	139568309	G	A	139568309	2	1	324	1	0	0	0	0	0	0	0	1	387	1045	37	1		1	AGPAT2	9	139568309	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	334141	139568309	1645122	31	19915											
IL15RA	3601	hgsc.bcm.edu;ucsc.edu	37	10	6001735	6001735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	6001735	C	A	6001735	3	1	324	1	0	0	0	0	1	0	0	0	7639	623	22	4	217	4	IL15RA	10	6001735	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10		6001735	129533012	32	19916											
RET	5979	hgsc.bcm.edu	37	10	43613844	43613844	+	Silent	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	43613844	C	A	43613844	2	1	324	1	0	0	0	0	0	0	0	1	13248	760	27	4		4	RET	10	43613844	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10	37612109	43613844	91920903	33	19917											
EBF3	253738	hgsc.bcm.edu	37	10	131671770	131671770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	131671770	G	A	131671770	3	1	324	1	0	0	0	0	1	0	0	0	4884	1086	38	1	964	1	EBF3	10	131671770	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	88057926	131671770	3862977	34	19918											
TUB	7275	hgsc.bcm.edu;ucsc.edu	37	11	8118839	8118839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	8118839	T	A	8118839	3	1	324	1	0	0	0	0	1	0	0	0	16754	1609	56	5	989	5	TUB	11	8118839	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10		8118839	126887677	35	19919											
SBF2	81846	hgsc.bcm.edu	37	11	9829597	9829597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	9829597	C	A	9829597	3	1	324	1	0	0	0	0	1	0	0	0	13872	623	22	4	1192	4	SBF2	11	9829597	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	1710758	9829597	125176919	36	19920											
HYOU1	10525	hgsc.bcm.edu	37	11	118923033	118923033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	118923033	C	T	118923033	3	4	324	1	0	0	0	0	1	0	0	0	7477	739	26	2	1971	2	HYOU1	11	118923033	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	109093436	118923033	16083483	37	19921											
PPFIBP1	8496	hgsc.bcm.edu;ucsc.edu	37	12	27787873	27787873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	27787873	T	G	27787873	3	3	324	1	0	0	0	0	1	0	0	0	12320	1493	52	5	101	5	PPFIBP1	12	27787873	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10		27787873	106064022	38	19922											
KLHDC5	57542	hgsc.bcm.edu;ucsc.edu	37	12	27944776	27944776	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	27944776	G	A	27944776	2	1	324	1	0	0	0	0	0	0	0	1	8366	1020	36	2		2	KLHDC5	12	27944776	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	156903	27944776	105907119	39	19923											
DENND5B	160518	hgsc.bcm.edu	37	12	31540654	31540654	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	31540654	T	G	31540654	3	3	324	1	0	0	0	0	1	0	0	0	4439	1606	56	5	120	5	DENND5B	12	31540654	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10	3595878	31540654	102311241	40	19924											
GXYLT1	283464	hgsc.bcm.edu	37	12	42481617	42481617	+	Missense_Mutation	SNP	G	G	C	rs75740340		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	42481617	G	C	42481617	3	2	324	1	0	0	0	0	1	0	0	0	6910	1058	37	4	32	4	GXYLT1	12	42481617	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	10940963	42481617	91370278	41	19925											
KRT3	3850	hgsc.bcm.edu	37	12	53185580	53185580	+	Silent	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	53185580	C	A	53185580	2	1	324	1	0	0	0	0	0	0	0	1	8473	639	23	4		4	KRT3	12	53185580	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10	10703963	53185580	80666315	42	19926											
NCKAP1L	3071	hgsc.bcm.edu	37	12	54925591	54925591	+	Silent	SNP	C	C	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	54925591	C	T	54925591	2	4	324	1	0	0	0	0	0	0	0	1	10229	610	22	2		2	NCKAP1L	12	54925591	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10	1740011	54925591	78926304	43	19927											
NAB2	4665	hgsc.bcm.edu	37	12	57485235	57485235	+	Silent	SNP	G	G	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	57485235	G	C	57485235	2	2	324	1	0	0	0	0	0	0	0	1	10139	1161	41	4		4	NAB2	12	57485235	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	2559644	57485235	76366660	44	19928											
XPOT	11260	hgsc.bcm.edu;ucsc.edu	37	12	64818820	64818820	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	64818820	A	C	64818820	3	2	324	1	0	0	0	0	1	0	0	0	17462	101	4	5	1356	5	XPOT	12	64818820	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	7333585	64818820	69033075	45	19929											
DYRK2	8445	hgsc.bcm.edu	37	12	68052359	68052359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	68052359	G	T	68052359	3	4	324	1	0	0	0	0	1	0	0	0	4858	1116	39	4	1682	4	DYRK2	12	68052359	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	3233539	68052359	65799536	46	19930											
ZC3H13	23091	hgsc.bcm.edu;ucsc.edu	37	13	46539482	46539482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	46539482	T	G	46539482	3	3	324	1	0	0	0	0	1	0	0	0	17577	1722	60	5	295	5	ZC3H13	13	46539482	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10		46539482	68630396	47	19931											
CLEC14A	161198	hgsc.bcm.edu	37	14	38723784	38723784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	38723784	C	G	38723784	3	3	324	1	0	0	0	0	1	0	0	0	3501	864	30	4	32	4	CLEC14A	14	38723784	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10		38723784	68625756	48	19932											
ZFYVE26	23503	hgsc.bcm.edu;ucsc.edu	37	14	68260458	68260458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	68260458	A	G	68260458	3	3	324	1	0	0	0	0	1	0	0	0	17680	217	8	3	5315	3	ZFYVE26	14	68260458	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	29536674	68260458	39089082	49	19933											
COQ6	51004	hgsc.bcm.edu	37	14	74428169	74428169	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	74428169	A	C	74428169	3	2	324	1	0	0	0	0	1	0	0	0	3751	159	6	5	1144	5	COQ6	14	74428169	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	6167711	74428169	32921371	50	19934											
TRIP11	9321	hgsc.bcm.edu	37	14	92469812	92469812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	92469812	A	T	92469812	3	4	324	1	0	0	0	0	1	0	0	0	16567	217	8	5	1475	5	TRIP11	14	92469812	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	18041643	92469812	14879728	51	19935											
CCNK	8812	hgsc.bcm.edu	37	14	99959139	99959139	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	99959139	A	T	99959139	3	4	324	1	0	0	0	0	1	0	0	0	2932	333	12	5	127	5	CCNK	14	99959139	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	7489327	99959139	7390401	52	19936											
ADAL	161823	hgsc.bcm.edu;ucsc.edu	37	15	43638090	43638090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	43638090	T	C	43638090	3	2	324	1	0	0	0	0	1	0	0	0	233	1638	57	3	486	3	ADAL	15	43638090	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10		43638090	58893302	53	19937											
IGDCC3	9543	hgsc.bcm.edu	37	15	65622992	65622992	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	65622992	T	G	65622992	3	3	324	1	0	0	0	0	1	0	0	0	7575	1696	59	5	815	5	IGDCC3	15	65622992	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10	21984902	65622992	36908400	54	19938											
DPP8	54878	hgsc.bcm.edu;ucsc.edu	37	15	65780068	65780068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	65780068	C	A	65780068	3	1	324	1	0	0	0	0	1	0	0	0	4734	593	21	4	1789	4	DPP8	15	65780068	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	157076	65780068	36751324	55	19939											
ATP2A1	487	hgsc.bcm.edu	37	16	28913193	28913193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	28913193	G	T	28913193	3	4	324	1	0	0	0	0	1	0	0	0	1136	1348	47	4	2172	4	ATP2A1	16	28913193	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10		28913193	61441560	56	19940											
SEPT1	1731	hgsc.bcm.edu	37	16	30389840	30389840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	30389840	A	G	30389840	3	3	324	1	0	0	0	0	1	0	0	0	14072	202	7	3	88	3	SEPT1	16	30389840	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	1476647	30389840	59964913	57	19941											
ABCC12	94160	hgsc.bcm.edu	37	16	48141279	48141279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	48141279	G	A	48141279	3	1	324	1	0	0	0	0	1	0	0	0	52	1203	42	2	1698	2	ABCC12	16	48141279	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	17751439	48141279	42213474	58	19942											
RSPRY1	89970	hgsc.bcm.edu	37	16	57261305	57261305	+	Silent	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	57261305	C	A	57261305	2	1	324	1	0	0	0	0	0	0	0	1	13726	643	23	4		4	RSPRY1	16	57261305	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10	9120026	57261305	33093448	59	19943											
GPR97	222487	hgsc.bcm.edu	37	16	57719575	57719575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	57719575	C	A	57719575	3	1	324	1	0	0	0	0	1	0	0	0	6727	478	17	4	1319	4	GPR97	16	57719575	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	458270	57719575	32635178	60	19944											
PSKH1	5681	hgsc.bcm.edu	37	16	67942656	67942656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	67942656	G	T	67942656	3	4	324	1	0	0	0	0	1	0	0	0	12674	1232	43	4	6	4	PSKH1	16	67942656	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	10223081	67942656	22412097	61	19945											
PSKH1	5681	hgsc.bcm.edu	37	16	67943579	67943579	+	Silent	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	67943579	C	A	67943579	2	1	324	1	0	0	0	0	0	0	0	1	12674	845	30	4		4	PSKH1	16	67943579	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10	923	67943579	22411174	62	19946											
IRF8	3394	hgsc.bcm.edu	37	16	85946834	85946834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	85946834	C	A	85946834	3	1	324	1	0	0	0	0	1	0	0	0	7843	623	22	4	559	4	IRF8	16	85946834	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	18003255	85946834	4407919	63	19947											
PRDM7	11105	hgsc.bcm.edu;ucsc.edu	37	16	90130158	90130158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	90130158	A	C	90130158	3	2	324	1	0	0	0	0	1	0	0	0	12471	101	4	5	1132	5	PRDM7	16	90130158	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	4183324	90130158	224595	64	19948											
SMG6	23293	hgsc.bcm.edu	37	17	2203200	2203200	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	2203200	G	A	2203200	4	1	324	1	0	0	0	0	0	1	0	0	14810	1386	48	2	3484	2	SMG6	17	2203200	Nonsense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10		2203200	78992010	65	19949											
KIAA0664	0	hgsc.bcm.edu	37	17	2597324	2597324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	2597324	T	C	2597324	3	2	324	1	0	0	0	0	1	0	0	0	8196	1609	56	3	977	3	KIAA0664	17	2597324	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10	394124	2597324	78597886	66	19950											
OR3A1	4994	hgsc.bcm.edu	37	17	3195191	3195191	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	3195191	A	T	3195191	3	4	324	1	0	0	0	0	1	0	0	0	11044	188	7	5	265	5	OR3A1	17	3195191	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	597867	3195191	78000019	67	19951											
NEURL4	84461	hgsc.bcm.edu	37	17	7226057	7226057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	7226057	G	T	7226057	3	4	324	1	0	0	0	0	1	0	0	0	10354	1232	43	4	2022	4	NEURL4	17	7226057	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	4030866	7226057	73969153	68	19952											
TMEM102	284114	hgsc.bcm.edu	37	17	7339626	7339626	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	7339626	G	C	7339626	3	2	324	1	0	0	0	0	1	0	0	0	16029	1087	38	4	334	4	TMEM102	17	7339626	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	113569	7339626	73855584	69	19953											
CD300LG	146894	hgsc.bcm.edu	37	17	41931333	41931334	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	41931334	-	C	41931333	7	5	324	1	0	1	1	0	0	0	0	0	3004	1551	54	0	654	0	CD300LG	17	41931333	Frame_Shift_Ins	INS	-	TCGA-BP-4759-01A-01D-1366-10	34591707	41931333	39263877	70	19954											
ABCA5	23461	hgsc.bcm.edu;ucsc.edu	37	17	67264115	67264115	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	67264115	T	G	67264115	3	3	324	1	0	0	0	0	1	0	0	0	35	1638	57	5	1883	5	ABCA5	17	67264115	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10	25332782	67264115	13931095	71	19955											
SDK2	54549	hgsc.bcm.edu	37	17	71429894	71429894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	71429894	C	A	71429894	3	1	324	1	0	0	0	0	1	0	0	0	13982	884	31	4	5373	4	SDK2	17	71429894	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01D-1366-10	4165779	71429894	9765316	72	19956											
METTL4	64863	hgsc.bcm.edu	37	18	2555005	2555005	+	Silent	SNP	C	C	T	rs61730027	bycluster;byfrequency;by1000genomes	TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	2555005	C	T	2555005	2	4	324	1	0	0	0	0	0	0	0	1	9509	564	20	2		2	METTL4	18	2555005	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10		2555005	75522243	73	19957											
TMEM200C	645369	hgsc.bcm.edu	37	18	5891547	5891547	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	5891547	G	A	5891547	2	1	324	1	0	0	0	0	0	0	0	1	16137	1280	45	2		2	TMEM200C	18	5891547	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	3336542	5891547	72185701	74	19958											
SLC39A6	25800	hgsc.bcm.edu	37	18	33706899	33706899	+	Silent	SNP	T	T	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	33706899	T	C	33706899	2	2	324	1	0	0	0	0	0	0	0	1	14635	1741	61	3		3	SLC39A6	18	33706899	Silent	SNP	T	TCGA-BP-4759-01A-01D-1366-10	27815352	33706899	44370349	75	19959											
MBD1	4152	hgsc.bcm.edu;ucsc.edu	37	18	47799782	47799782	+	Silent	SNP	C	C	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	47799782	C	T	47799782	2	4	324	1	0	0	0	0	0	0	0	1	9349	680	24	2		2	MBD1	18	47799782	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10	14092883	47799782	30277466	76	19960											
VAV1	7409	hgsc.bcm.edu	37	19	6828447	6828447	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	6828447	G	A	6828447	2	1	324	1	0	0	0	0	0	0	0	1	17143	1074	38	1		1	VAV1	19	6828447	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10		6828447	52300536	77	19961											
RASAL3	64926	hgsc.bcm.edu;ucsc.edu	37	19	15565261	15565261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	15565261	G	A	15565261	3	1	324	1	0	0	0	0	1	0	0	0	13078	1232	43	2	988	2	RASAL3	19	15565261	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	8736814	15565261	43563722	78	19962											
CPAMD8	27151	hgsc.bcm.edu	37	19	17113103	17113103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	17113103	G	A	17113103	3	1	324	1	0	0	0	0	1	0	0	0	3797	1203	42	2	5062	2	CPAMD8	19	17113103	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	1547842	17113103	42015880	79	19963											
KCNN1	3780	hgsc.bcm.edu;ucsc.edu	37	19	18100537	18100537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	18100537	G	A	18100537	3	1	324	1	0	0	0	0	1	0	0	0	8085	1087	38	1	1205	1	KCNN1	19	18100537	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	987434	18100537	41028446	80	19964											
ZNF566	84924	hgsc.bcm.edu;ucsc.edu	37	19	36940081	36940081	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	36940081	G	T	36940081	4	4	324	1	0	0	0	0	0	1	0	0	18009	1294	45	4	205	4	ZNF566	19	36940081	Nonsense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10	18839544	36940081	22188902	81	19965											
KCNN4	3783	hgsc.bcm.edu;ucsc.edu	37	19	44276215	44276215	+	Silent	SNP	G	G	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	44276215	G	C	44276215	2	2	324	1	0	0	0	0	0	0	0	1	8088	958	34	4		4	KCNN4	19	44276215	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	7336134	44276215	14852768	82	19966											
ERCC1	2067	hgsc.bcm.edu	37	19	45917284	45917284	+	Silent	SNP	T	T	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	45917284	T	C	45917284	2	2	324	1	0	0	0	0	0	0	0	1	5214	1490	52	3		3	ERCC1	19	45917284	Silent	SNP	T	TCGA-BP-4759-01A-01D-1366-10	1641069	45917284	13211699	83	19967											
NFS1	9054	hgsc.bcm.edu;ucsc.edu	37	20	34285709	34285709	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	T	34285709	A	T	34285709	3	4	324	1	0	0	0	0	1	0	0	0	10392	72	3	5	1196	5	NFS1	20	34285709	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10		34285709	28739811	84	19968											
PMM1	5372	hgsc.bcm.edu	37	22	41973900	41973900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	41973900	G	C	41973900	3	2	324	1	0	0	0	0	1	0	0	0	12143	1232	43	4	218	4	PMM1	22	41973900	Missense_Mutation	SNP	G	TCGA-BP-4759-01A-01D-1366-10		41973900	9330666	85	19969											
ARSD	414	hgsc.bcm.edu	37	X	2836060	2836060	+	Silent	SNP	G	G	A	rs113318393	bycluster;by1000genomes	TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	2836060	G	A	2836060	2	1	324	1	0	0	0	0	0	0	0	1	989	1103	39	1		1	ARSD	23	2836060	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10		2836060	152434500	86	19970											
TLR7	51284	hgsc.bcm.edu;ucsc.edu	37	X	12906217	12906217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	C	12906217	T	C	12906217	3	2	324	1	0	0	0	0	1	0	0	0	15968	1841	64	3	2596	3	TLR7	23	12906217	Missense_Mutation	SNP	T	TCGA-BP-4759-01A-01D-1366-10	10070157	12906217	142364343	87	19971											
CCDC120	90060	hgsc.bcm.edu	37	X	48919829	48919829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	48919829	A	G	48919829	3	3	324	1	0	0	0	0	1	0	0	0	2758	333	12	3	24	3	CCDC120	23	48919829	Missense_Mutation	SNP	A	TCGA-BP-4759-01A-01D-1366-10	36013612	48919829	106350731	88	19972											
GAGE10	643832	hgsc.bcm.edu	37	X	49173718	49173718	+	Silent	SNP	C	C	G	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	G	49173718	C	G	49173718	2	3	324	1	0	0	0	0	0	0	0	1	6194	726	26	4		4	GAGE10	23	49173718	Silent	SNP	C	TCGA-BP-4759-01A-01D-1366-10	253889	49173718	106096842	89	19973											
SLC25A5	292	hgsc.bcm.edu	37	X	118604412	118604412	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	118604412	G	A	118604412	2	1	324	1	0	0	0	0	0	0	0	1	14525	1248	44	2		2	SLC25A5	23	118604412	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	69430694	118604412	36666148	90	19974											
ATP2B3	492	hgsc.bcm.edu	37	X	152815550	152815550	+	Silent	SNP	G	G	A	novel		TCGA-BP-4759-01A-01D-1366-10	TCGA-BP-4759-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a71f7878-9066-4d08-a7be-e643844e4c1b	42829599-0463-45ed-803a-2758cea4ea5c	A	152815550	G	A	152815550	2	1	324	1	0	0	0	0	0	0	0	1	1141	1103	39	1		1	ATP2B3	23	152815550	Silent	SNP	G	TCGA-BP-4759-01A-01D-1366-10	34211138	152815550	2455010	91	19975											
VHL	7428	hgsc.bcm.edu	37	3	10183725	10183725	+	Missense_Mutation	SNP	C	C	T	rs5030826	alternate_allele	TCGA-BP-4759-01A-01W-1362-10	TCGA-BP-4759-11A-01W-1363-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	5f466419-8d6e-4bab-92b6-7678a006a720	ef9eaae7-3722-4232-9650-9837c345b865	T	10183725	C	T	10183725	3	4	325	1	0	0	0	0	1	0	0	0	17174	893	31	1	196	1	VHL	3	10183725	Missense_Mutation	SNP	C	TCGA-BP-4759-01A-01W-1362-10		10183725	187838705	1	19976											
CACHD1	57685	broad.mit.edu	37	1	65095121	65095121	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	65095121	G	A	65095121	3	1	326	1	0	0	0	0	1	0	0	0	2539	971	34	2	466	2	CACHD1	1	65095121	Missense_Mutation	SNP	G	TCGA-BP-4760-01A-02D-1421-08		65095121	184155500	1	19977											
KCNA10	3744	broad.mit.edu	37	1	111059964	111059964	+	Missense_Mutation	SNP	T	T	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	G	111059964	T	G	111059964	3	3	326	1	0	0	0	0	1	0	0	0	8009	1780	62	5	93	5	KCNA10	1	111059964	Missense_Mutation	SNP	T	TCGA-BP-4760-01A-02D-1421-08	45964843	111059964	138190657	2	19978											
KIF14	9928	broad.mit.edu	37	1	200584483	200584483	+	Splice_Site	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	200584483	G	A	200584483	5	1	326	1	0	0	0	0	0	0	1	0	8283	1159	40	1	3691	1	KIF14	1	200584483	Splice_Site	SNP	G	TCGA-BP-4760-01A-02D-1421-08	89524519	200584483	48666138	3	19979											
OR2C3	81472	broad.mit.edu	37	1	247695757	247695757	+	Silent	SNP	G	G	A	rs61746303	byFrequency	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	247695757	G	A	247695757	2	1	326	1	0	0	0	0	0	0	0	1	11000	1335	47	2		2	OR2C3	1	247695757	Silent	SNP	G	TCGA-BP-4760-01A-02D-1421-08	47111274	247695757	1554864	4	19980											
CCDC108	255101	broad.mit.edu	37	2	219892412	219892412	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	219892412	C	A	219892412	3	1	326	1	0	0	0	0	1	0	0	0	2745	710	25	4	3698	4	CCDC108	2	219892412	Missense_Mutation	SNP	C	TCGA-BP-4760-01A-02D-1421-08		219892412	23306961	5	19981											
UQCRC1	7384	broad.mit.edu	37	3	48638261	48638261	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	48638261	G	A	48638261	3	1	326	1	0	0	0	0	1	0	0	0	17031	1232	43	2	483	2	UQCRC1	3	48638261	Missense_Mutation	SNP	G	TCGA-BP-4760-01A-02D-1421-08		48638261	149384169	6	19982											
TFG	10342	broad.mit.edu	37	3	100432611	100432611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	-	100432611	A	-	100432611	7	5	326	1	0	1	0	1	0	0	0	0	15818	362	13	0	84	0	TFG	3	100432611	Frame_Shift_Del	DEL	A	TCGA-BP-4760-01A-02D-1421-08	51794350	100432611	97589819	7	19983											
GK5	256356	broad.mit.edu	37	3	141934478	141934478	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	141934478	C	T	141934478	4	4	326	1	0	0	0	0	0	1	0	0	6429	856	30	2	1445	2	GK5	3	141934478	Nonsense_Mutation	SNP	C	TCGA-BP-4760-01A-02D-1421-08	41501867	141934478	56087952	8	19984											
MLF1	4291	broad.mit.edu	37	3	158315963	158315963	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	G	158315963	A	G	158315963	3	3	326	1	0	0	0	0	1	0	0	0	9621	188	7	3	388	3	MLF1	3	158315963	Missense_Mutation	SNP	A	TCGA-BP-4760-01A-02D-1421-08	16381485	158315963	39706467	9	19985											
ARAP2	116984	broad.mit.edu	37	4	36081903	36081903	+	Splice_Site	SNP	T	T	C			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	C	36081903	T	C	36081903	5	2	326	1	0	0	0	0	0	0	1	0	839	1594	55	3	583	3	ARAP2	4	36081903	Splice_Site	SNP	T	TCGA-BP-4760-01A-02D-1421-08		36081903	155072373	10	19986											
NUDT12	83594	broad.mit.edu	37	5	102894748	102894748	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	102894748	G	A	102894748	3	1	326	1	0	0	0	0	1	0	0	0	10735	1029	36	2	780	2	NUDT12	5	102894748	Missense_Mutation	SNP	G	TCGA-BP-4760-01A-02D-1421-08		102894748	78020512	11	19987											
SLC36A1	206358	broad.mit.edu	37	5	150838431	150838431	+	Silent	SNP	G	G	A	rs142064945		TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	150838431	G	A	150838431	2	1	326	1	0	0	0	0	0	0	0	1	14606	1103	39	1		1	SLC36A1	5	150838431	Silent	SNP	G	TCGA-BP-4760-01A-02D-1421-08	47943683	150838431	30076829	12	19988											
RARS	5917	broad.mit.edu	37	5	167919717	167919717	+	Silent	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	167919717	C	T	167919717	2	4	326	1	0	0	0	0	0	0	0	1	13071	738	26	2		2	RARS	5	167919717	Silent	SNP	C	TCGA-BP-4760-01A-02D-1421-08	17081286	167919717	12995543	13	19989											
SLC22A23	63027	broad.mit.edu	37	6	3324228	3324228	+	Silent	SNP	G	G	A	rs151139208	byFrequency	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	3324228	G	A	3324228	2	1	326	1	0	0	0	0	0	0	0	1	14465	962	34	2		2	SLC22A23	6	3324228	Silent	SNP	G	TCGA-BP-4760-01A-02D-1421-08		3324228	167790839	14	19990											
DSP	1832	broad.mit.edu	37	6	7570788	7570788	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	G	7570788	A	G	7570788	3	3	326	1	0	0	0	0	1	0	0	0	4783	101	4	3	1743	3	DSP	6	7570788	Missense_Mutation	SNP	A	TCGA-BP-4760-01A-02D-1421-08	4246560	7570788	163544279	15	19991											
ATXN1	6310	broad.mit.edu	37	6	16328215	16328215	+	Silent	SNP	C	C	T	rs114230242	byFrequency	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	16328215	C	T	16328215	2	4	326	1	0	0	0	0	0	0	0	1	1209	755	27	1		1	ATXN1	6	16328215	Silent	SNP	C	TCGA-BP-4760-01A-02D-1421-08	8757427	16328215	154786852	16	19992											
KIFC1	3833	broad.mit.edu	37	6	33374019	33374019	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	33374019	G	A	33374019	3	1	326	1	0	0	0	0	1	0	0	0	8319	1087	38	1	1613	1	KIFC1	6	33374019	Missense_Mutation	SNP	G	TCGA-BP-4760-01A-02D-1421-08	17045804	33374019	137741048	17	19993											
CBLL1	79872	broad.mit.edu	37	7	107399418	107399418	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	107399418	A	T	107399418	3	4	326	1	0	0	0	0	1	0	0	0	2705	449	16	5	1293	5	CBLL1	7	107399418	Missense_Mutation	SNP	A	TCGA-BP-4760-01A-02D-1421-08		107399418	51739245	18	19994											
FBXO43	286151	broad.mit.edu	37	8	101154158	101154158	+	Silent	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	G	101154158	A	G	101154158	2	3	326	1	0	0	0	0	0	0	0	1	5759	175	7	3		3	FBXO43	8	101154158	Silent	SNP	A	TCGA-BP-4760-01A-02D-1421-08		101154158	45209864	19	19995											
PTPRD	5789	broad.mit.edu	37	9	8484279	8484279	+	Silent	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	8484279	G	A	8484279	2	1	326	1	0	0	0	0	0	0	0	1	12812	962	34	2		2	PTPRD	9	8484279	Silent	SNP	G	TCGA-BP-4760-01A-02D-1421-08		8484279	132729152	20	19996											
KIF24	347240	broad.mit.edu	37	9	34259681	34259681	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	34259681	C	T	34259681	3	4	326	1	0	0	0	0	1	0	0	0	8299	739	26	2	2584	2	KIF24	9	34259681	Missense_Mutation	SNP	C	TCGA-BP-4760-01A-02D-1421-08	25775402	34259681	106953750	21	19997											
TLR4	7099	broad.mit.edu	37	9	120475351	120475351	+	Silent	SNP	G	G	C			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	C	120475351	G	C	120475351	2	2	326	1	0	0	0	0	0	0	0	1	15965	1335	47	4		4	TLR4	9	120475351	Silent	SNP	G	TCGA-BP-4760-01A-02D-1421-08	86215670	120475351	20738080	22	19998											
LRP4	4038	broad.mit.edu	37	11	46924371	46924371	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	46924371	G	T	46924371	3	4	326	1	0	0	0	0	1	0	0	0	8966	1368	48	4	5703	4	LRP4	11	46924371	Missense_Mutation	SNP	G	TCGA-BP-4760-01A-02D-1421-08		46924371	88082145	23	19999											
PACSIN3	29763	broad.mit.edu	37	11	47200712	47200712	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	47200712	C	T	47200712	3	4	326	1	0	0	0	0	1	0	0	0	11383	893	31	1	392	1	PACSIN3	11	47200712	Missense_Mutation	SNP	C	TCGA-BP-4760-01A-02D-1421-08	276341	47200712	87805804	24	20000											
SF3B2	10992	broad.mit.edu	37	11	65820518	65820518	+	Silent	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	65820518	G	A	65820518	2	1	326	1	0	0	0	0	0	0	0	1	14164	1190	42	2		2	SF3B2	11	65820518	Silent	SNP	G	TCGA-BP-4760-01A-02D-1421-08	18619806	65820518	69185998	25	20001											
WNK1	65125	broad.mit.edu	37	12	995245	995245	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	995245	G	T	995245	3	4	326	1	0	0	0	0	1	0	0	0	17389	1203	42	4	6851	4	WNK1	12	995245	Missense_Mutation	SNP	G	TCGA-BP-4760-01A-02D-1421-08		995245	132856650	26	20002											
CD9	928	broad.mit.edu	37	12	6334633	6334633	+	Silent	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	G	6334633	A	G	6334633	2	3	326	1	0	0	0	0	0	0	0	1	3048	320	12	3		3	CD9	12	6334633	Silent	SNP	A	TCGA-BP-4760-01A-02D-1421-08	5339388	6334633	127517262	27	20003											
TM7SF3	51768	broad.mit.edu	37	12	27143451	27143451	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	27143451	G	A	27143451	3	1	326	1	0	0	0	0	1	0	0	0	15987	971	34	2	940	2	TM7SF3	12	27143451	Missense_Mutation	SNP	G	TCGA-BP-4760-01A-02D-1421-08	20808818	27143451	106708444	28	20004											
SLC22A17	51310	broad.mit.edu	37	14	23816939	23816939	+	Splice_Site	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	G	23816939	A	G	23816939	5	3	326	1	0	0	0	0	0	0	1	0	14461	86	3	3	682	3	SLC22A17	14	23816939	Splice_Site	SNP	A	TCGA-BP-4760-01A-02D-1421-08		23816939	83532601	29	20005											
HERC2	8924	broad.mit.edu	37	15	28375699	28375699	+	Silent	SNP	G	G	A	rs61756151	byFrequency	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	28375699	G	A	28375699	2	1	326	1	0	0	0	0	0	0	0	1	7065	1079	38	1		1	HERC2	15	28375699	Silent	SNP	G	TCGA-BP-4760-01A-02D-1421-08		28375699	74155693	30	20006											
NPRL3	8131	broad.mit.edu	37	16	139794	139794	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	139794	G	A	139794	3	1	326	1	0	0	0	0	1	0	0	0	10605	1116	39	1	452	1	NPRL3	16	139794	Missense_Mutation	SNP	G	TCGA-BP-4760-01A-02D-1421-08		139794	90214959	31	20007											
DNAH3	55567	broad.mit.edu	37	16	21108814	21108814	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	C	21108814	T	C	21108814	3	2	326	1	0	0	0	0	1	0	0	0	4605	1812	63	3	10002	3	DNAH3	16	21108814	Missense_Mutation	SNP	T	TCGA-BP-4760-01A-02D-1421-08	20969020	21108814	69245939	32	20008											
KRT25	147183	broad.mit.edu	37	17	38907252	38907252	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	38907252	C	T	38907252	3	4	326	1	0	0	0	0	1	0	0	0	8469	768	27	1	457	1	KRT25	17	38907252	Missense_Mutation	SNP	C	TCGA-BP-4760-01A-02D-1421-08		38907252	42287958	33	20009											
ARHGAP35	2909	broad.mit.edu	37	19	47424644	47424644	+	Silent	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	47424644	G	A	47424644	2	1	326	1	0	0	0	0	0	0	0	1	6802	962	34	2		2	ARHGAP35	19	47424644	Silent	SNP	G	TCGA-BP-4760-01A-02D-1421-08		47424644	11704339	34	20010											
PEG3	5178	broad.mit.edu	37	19	57327002	57327002	+	Silent	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	G	57327002	A	G	57327002	2	3	326	1	0	0	0	0	0	0	0	1	11727	146	6	3		3	PEG3	19	57327002	Silent	SNP	A	TCGA-BP-4760-01A-02D-1421-08	9902358	57327002	1801981	35	20011											
SULF2	55959	broad.mit.edu	37	20	46294036	46294036	+	Splice_Site	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	G	46294036	A	G	46294036	5	3	326	1	0	0	0	0	0	0	1	0	15383	115	4	3	740	3	SULF2	20	46294036	Splice_Site	SNP	A	TCGA-BP-4760-01A-02D-1421-08		46294036	16731484	36	20012											
RRP1B	23076	broad.mit.edu	37	21	45096683	45096683	+	Silent	SNP	T	T	C			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	C	45096683	T	C	45096683	2	2	326	1	0	0	0	0	0	0	0	1	13701	1567	55	3		3	RRP1B	21	45096683	Silent	SNP	T	TCGA-BP-4760-01A-02D-1421-08		45096683	3033212	37	20013											
BRD1	23774	broad.mit.edu	37	22	50217548	50217548	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	G	50217548	A	G	50217548	3	3	326	1	0	0	0	0	1	0	0	0	1503	420	15	3	2806	3	BRD1	22	50217548	Missense_Mutation	SNP	A	TCGA-BP-4760-01A-02D-1421-08		50217548	1087018	38	20014											
GPRASP1	9737	broad.mit.edu	37	X	101913005	101913005	+	Silent	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	T	101913005	C	T	101913005	2	4	326	1	0	0	0	0	0	0	0	1	6729	506	18	2		2	GPRASP1	23	101913005	Silent	SNP	C	TCGA-BP-4760-01A-02D-1421-08		101913005	53357555	39	20015											
GUCY2F	2986	broad.mit.edu	37	X	108638655	108638655	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	A	108638655	G	A	108638655	3	1	326	1	0	0	0	0	1	0	0	0	6905	1203	42	2	1019	2	GUCY2F	23	108638655	Missense_Mutation	SNP	G	TCGA-BP-4760-01A-02D-1421-08	6725650	108638655	46631905	40	20016											
NASP	4678	hgsc.bcm.edu;ucsc.edu	37	1	46083164	46083164	+	Silent	SNP	A	A	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	46083164	A	G	46083164	2	3	327	1	0	0	0	0	0	0	0	1	10179	69	3	3		3	NASP	1	46083164	Silent	SNP	A	TCGA-BP-4761-01A-01D-1366-10		46083164	203167457	1	20017											
BEND5	79656	hgsc.bcm.edu	37	1	49202004	49202004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	49202004	T	C	49202004	3	2	327	1	0	0	0	0	1	0	0	0	1401	1792	62	3	258	3	BEND5	1	49202004	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	3118840	49202004	200048617	2	20018											
ZNF644	84146	hgsc.bcm.edu;ucsc.edu	37	1	91404914	91404914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	91404914	C	A	91404914	3	1	327	1	0	0	0	0	1	0	0	0	18072	855	30	4	2002	4	ZNF644	1	91404914	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	42202910	91404914	157845707	3	20019											
BCAS2	10286	hgsc.bcm.edu	37	1	115112664	115112664	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	115112664	C	G	115112664	3	3	327	1	0	0	0	0	1	0	0	0	1351	913	32	4	185	4	BCAS2	1	115112664	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	23707750	115112664	134137957	4	20020											
TTF2	8458	hgsc.bcm.edu;ucsc.edu	37	1	117641487	117641487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	117641487	G	A	117641487	3	1	327	1	0	0	0	0	1	0	0	0	16731	1058	37	1	3388	1	TTF2	1	117641487	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	2528823	117641487	131609134	5	20021											
MAN1A2	10905	hgsc.bcm.edu;ucsc.edu	37	1	117984948	117984948	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	117984948	G	A	117984948	5	1	327	1	0	0	0	0	0	0	1	0	9218	1275	44	2	973	2	MAN1A2	1	117984948	Splice_Site	SNP	G	TCGA-BP-4761-01A-01D-1366-10	343461	117984948	131265673	6	20022											
ACP6	51205	hgsc.bcm.edu;ucsc.edu	37	1	147119248	147119248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	147119248	T	G	147119248	3	3	327	1	0	0	0	0	1	0	0	0	165	1435	50	5	26	5	ACP6	1	147119248	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	29134300	147119248	102131373	7	20023											
SV2A	9900	hgsc.bcm.edu	37	1	149883492	149883492	+	Silent	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	149883492	G	A	149883492	2	1	327	1	0	0	0	0	0	0	0	1	15429	929	33	2		2	SV2A	1	149883492	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10	2764244	149883492	99367129	8	20024											
GON4L	54856	hgsc.bcm.edu	37	1	155733233	155733233	+	Silent	SNP	T	T	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	155733233	T	C	155733233	2	2	327	1	0	0	0	0	0	0	0	1	6579	1567	55	3		3	GON4L	1	155733233	Silent	SNP	T	TCGA-BP-4761-01A-01D-1366-10	5849741	155733233	93517388	9	20025											
ATF6	22926	hgsc.bcm.edu;ucsc.edu	37	1	161736220	161736220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	161736220	G	T	161736220	3	4	327	1	0	0	0	0	1	0	0	0	1084	1174	41	4	72	4	ATF6	1	161736220	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	6002987	161736220	87514401	10	20026											
DUSP27	92235	hgsc.bcm.edu;ucsc.edu	37	1	167096184	167096184	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	167096184	G	T	167096184	4	4	327	1	0	0	0	0	0	1	0	0	4826	1175	41	4	1834	4	DUSP27	1	167096184	Nonsense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	5359964	167096184	82154437	11	20027											
RCSD1	92241	hgsc.bcm.edu	37	1	167663408	167663408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	167663408	G	T	167663408	3	4	327	1	0	0	0	0	1	0	0	0	13198	1261	44	4	361	4	RCSD1	1	167663408	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	567224	167663408	81587213	12	20028											
SCYL3	57147	hgsc.bcm.edu;ucsc.edu	37	1	169831811	169831811	+	Silent	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	169831811	G	A	169831811	2	1	327	1	0	0	0	0	0	0	0	1	13962	1048	37	1		1	SCYL3	1	169831811	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10	2168403	169831811	79418810	13	20029											
TNR	7143	hgsc.bcm.edu;ucsc.edu	37	1	175372418	175372418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	175372418	G	T	175372418	3	4	327	1	0	0	0	0	1	0	0	0	16350	1136	40	4	3322	4	TNR	1	175372418	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	5540607	175372418	73878203	14	20030											
PAPPA2	60676	hgsc.bcm.edu;ucsc.edu	37	1	176525830	176525830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	176525830	G	T	176525830	3	4	327	1	0	0	0	0	1	0	0	0	11440	962	34	4	374	4	PAPPA2	1	176525830	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	1153412	176525830	72724791	15	20031											
LAMB3	3914	hgsc.bcm.edu	37	1	209796913	209796913	+	Silent	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	209796913	G	A	209796913	2	1	327	1	0	0	0	0	0	0	0	1	8619	1335	47	2		2	LAMB3	1	209796913	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10	33271083	209796913	39453708	16	20032											
HHAT	55733	hgsc.bcm.edu;ucsc.edu	37	1	210573841	210573841	+	Silent	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	210573841	G	T	210573841	2	4	327	1	0	0	0	0	0	0	0	1	7096	1161	41	4		4	HHAT	1	210573841	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10	776928	210573841	38676780	17	20033											
RYR2	6262	hgsc.bcm.edu;ucsc.edu	37	1	237778053	237778053	+	Silent	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	237778053	G	A	237778053	2	1	327	1	0	0	0	0	0	0	0	1	13782	1306	46	2		2	RYR2	1	237778053	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10	27204212	237778053	11472568	18	20034											
HNRNPU	3192	hgsc.bcm.edu;ucsc.edu	37	1	245022575	245022575	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	245022575	A	G	245022575	5	3	327	1	0	0	0	0	0	0	1	0	7280	405	14	3	1398	3	HNRNPU	1	245022575	Splice_Site	SNP	A	TCGA-BP-4761-01A-01D-1366-10	7244522	245022575	4228046	19	20035											
ITSN2	50618	hgsc.bcm.edu;ucsc.edu	37	2	24493591	24493591	+	Silent	SNP	A	A	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	24493591	A	G	24493591	2	3	327	1	0	0	0	0	0	0	0	1	7934	127	5	3		3	ITSN2	2	24493591	Silent	SNP	A	TCGA-BP-4761-01A-01D-1366-10		24493591	218705782	20	20036											
C2orf53	339779	hgsc.bcm.edu;ucsc.edu	37	2	27360063	27360063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	27360063	G	T	27360063	3	4	327	1	0	0	0	0	1	0	0	0	2176	1261	44	4	107	4	C2orf53	2	27360063	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	2866472	27360063	215839310	21	20037											
EIF2AK2	5610	hgsc.bcm.edu	37	2	37374007	37374007	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	37374007	T	A	37374007	4	1	327	1	0	0	0	0	0	1	0	0	4999	1763	61	5	1482	5	EIF2AK2	2	37374007	Nonsense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	10013944	37374007	205825366	22	20038											
POLR1A	25885	hgsc.bcm.edu;ucsc.edu	37	2	86327173	86327173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	86327173	C	A	86327173	3	1	327	1	0	0	0	0	1	0	0	0	12216	710	25	4	5094	4	POLR1A	2	86327173	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	48953166	86327173	156872200	23	20039											
EPC2	26122	hgsc.bcm.edu	37	2	149447846	149447846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	149447846	G	A	149447846	3	1	327	1	0	0	0	0	1	0	0	0	5163	1261	44	2	223	2	EPC2	2	149447846	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	63120673	149447846	93751527	24	20040											
NEB	4703	hgsc.bcm.edu	37	2	152467134	152467134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	152467134	G	T	152467134	3	4	327	1	0	0	0	0	1	0	0	0	10309	1029	36	4	14184	4	NEB	2	152467134	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	3019288	152467134	90732239	25	20041											
AGFG1	3267	hgsc.bcm.edu;ucsc.edu	37	2	228398343	228398343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	228398343	C	A	228398343	3	1	327	1	0	0	0	0	1	0	0	0	380	507	18	4	995	4	AGFG1	2	228398343	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	75931209	228398343	14801030	26	20042											
ATXN7	6314	hgsc.bcm.edu;ucsc.edu	37	3	63938069	63938069	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	63938069	G	C	63938069	3	2	327	1	0	0	0	0	1	0	0	0	1215	1348	47	4	419	4	ATXN7	3	63938069	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10		63938069	134084361	27	20043											
CADM2	253559	hgsc.bcm.edu;ucsc.edu	37	3	85961677	85961677	+	Silent	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	85961677	G	A	85961677	2	1	327	1	0	0	0	0	0	0	0	1	2569	991	35	2		2	CADM2	3	85961677	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10	22023608	85961677	112060753	28	20044											
CLDND1	56650	hgsc.bcm.edu;ucsc.edu	37	3	98240229	98240229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	98240229	C	A	98240229	3	1	327	1	0	0	0	0	1	0	0	0	3495	478	17	4	737	4	CLDND1	3	98240229	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	12278552	98240229	99782201	29	20045											
ZBTB38	253461	hgsc.bcm.edu;ucsc.edu	37	3	141161504	141161504	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	141161504	T	G	141161504	3	3	327	1	0	0	0	0	1	0	0	0	17551	1522	53	5	276	5	ZBTB38	3	141161504	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	42921275	141161504	56860926	30	20046											
TFDP2	7029	hgsc.bcm.edu;ucsc.edu	37	3	141693004	141693004	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	141693004	T	G	141693004	3	3	327	1	0	0	0	0	1	0	0	0	15810	1548	54	5	815	5	TFDP2	3	141693004	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	531500	141693004	56329426	31	20047											
RAP2B	5912	hgsc.bcm.edu;ucsc.edu	37	3	152880655	152880664	+	Frame_Shift_Del	DEL	CGGCGGGCAC	CGGCGGGCAC	-	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	CGGCGGGCAC	CGGCGGGCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	-	152880664	CGGCGGGCAC	-	152880655	7	5	327	1	0	1	0	1	0	0	0	0	13054	536	19	0	175	0	RAP2B	3	152880655	Frame_Shift_Del	DEL	CGGCGGGCAC	TCGA-BP-4761-01A-01D-1366-10	11187651	152880655	45141775	32	20048											
SLC33A1	9197	hgsc.bcm.edu;ucsc.edu	37	3	155547594	155547594	+	Silent	SNP	C	C	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	155547594	C	T	155547594	2	4	327	1	0	0	0	0	0	0	0	1	14579	465	17	2		2	SLC33A1	3	155547594	Silent	SNP	C	TCGA-BP-4761-01A-01D-1366-10	2666939	155547594	42474836	33	20049											
ACAP2	23527	hgsc.bcm.edu	37	3	195022890	195022890	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	195022890	T	A	195022890	3	1	327	1	0	0	0	0	1	0	0	0	119	1841	64	5	1246	5	ACAP2	3	195022890	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	39475296	195022890	2999540	34	20050											
KDR	3791	hgsc.bcm.edu;ucsc.edu	37	4	55968633	55968633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	55968633	G	A	55968633	3	1	327	1	0	0	0	0	1	0	0	0	8146	1145	40	1	2108	1	KDR	4	55968633	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10		55968633	135185643	35	20051											
PPEF2	5470	hgsc.bcm.edu	37	4	76787408	76787408	+	Silent	SNP	T	T	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	76787408	T	C	76787408	2	2	327	1	0	0	0	0	0	0	0	1	12315	1567	55	3		3	PPEF2	4	76787408	Silent	SNP	T	TCGA-BP-4761-01A-01D-1366-10	20818775	76787408	114366868	36	20052											
SNX18	112574	hgsc.bcm.edu;ucsc.edu	37	5	53839014	53839014	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	53839014	C	G	53839014	3	3	327	1	0	0	0	0	1	0	0	0	14902	913	32	4	1899	4	SNX18	5	53839014	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10		53839014	127076246	37	20053											
VCAN	1462	hgsc.bcm.edu;ucsc.edu	37	5	82837110	82837110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	82837110	C	T	82837110	3	4	327	1	0	0	0	0	1	0	0	0	17150	594	21	2	8314	2	VCAN	5	82837110	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	28998096	82837110	98078150	38	20054											
ADAMTS19	171019	hgsc.bcm.edu	37	5	128984499	128984499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	128984499	C	T	128984499	3	4	327	1	0	0	0	0	1	0	0	0	264	913	32	2	2044	2	ADAMTS19	5	128984499	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	46147389	128984499	51930761	39	20055											
PLAC8L1	153770	hgsc.bcm.edu;ucsc.edu	37	5	145483813	145483813	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	145483813	T	A	145483813	3	1	327	1	0	0	0	0	1	0	0	0	12023	1638	57	5	487	5	PLAC8L1	5	145483813	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	16499314	145483813	35431447	40	20056											
RREB1	6239	hgsc.bcm.edu	37	6	7231121	7231121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	7231121	G	A	7231121	3	1	327	1	0	0	0	0	1	0	0	0	13692	1319	46	2	2815	2	RREB1	6	7231121	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10		7231121	163883946	41	20057											
BTBD9	114781	hgsc.bcm.edu;ucsc.edu	37	6	38224273	38224273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	38224273	C	A	38224273	3	1	327	1	0	0	0	0	1	0	0	0	1550	826	29	4	376	4	BTBD9	6	38224273	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	30993152	38224273	132890794	42	20058											
CUL9	23113	hgsc.bcm.edu;ucsc.edu	37	6	43182827	43182827	+	Missense_Mutation	SNP	C	C	A	rs146106470	alternate_allele	TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	43182827	C	A	43182827	3	1	327	1	0	0	0	0	1	0	0	0	4063	739	26	4	5813	4	CUL9	6	43182827	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	4958554	43182827	127932240	43	20059											
HMGCLL1	54511	hgsc.bcm.edu;ucsc.edu	37	6	55406919	55406919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	55406919	C	A	55406919	3	1	327	1	0	0	0	0	1	0	0	0	7237	855	30	4	926	4	HMGCLL1	6	55406919	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	12224092	55406919	115708148	44	20060											
NMBR	4829	hgsc.bcm.edu	37	6	142409628	142409628	+	Silent	SNP	C	C	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	142409628	C	T	142409628	2	4	327	1	0	0	0	0	0	0	0	1	10494	581	21	2		2	NMBR	6	142409628	Silent	SNP	C	TCGA-BP-4761-01A-01D-1366-10	87002709	142409628	28705439	45	20061											
KIAA1549	57670	hgsc.bcm.edu	37	7	138546115	138546115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	138546115	A	G	138546115	3	3	327	1	0	0	0	0	1	0	0	0	8251	391	14	3	855	3	KIAA1549	7	138546115	Missense_Mutation	SNP	A	TCGA-BP-4761-01A-01D-1366-10		138546115	20592548	46	20062											
PPP2CB	5516	hgsc.bcm.edu	37	8	30643766	30643766	+	Silent	SNP	T	T	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	30643766	T	G	30643766	2	3	327	1	0	0	0	0	0	0	0	1	12391	1567	55	5		5	PPP2CB	8	30643766	Silent	SNP	T	TCGA-BP-4761-01A-01D-1366-10		30643766	115720256	47	20063											
CDH17	1015	hgsc.bcm.edu	37	8	95183103	95183103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	95183103	C	A	95183103	3	1	327	1	0	0	0	0	1	0	0	0	3104	593	21	4	1648	4	CDH17	8	95183103	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	64539337	95183103	51180919	48	20064											
DPY19L4	286148	hgsc.bcm.edu	37	8	95793334	95793334	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	95793334	A	C	95793334	3	2	327	1	0	0	0	0	1	0	0	0	4745	246	9	5	1717	5	DPY19L4	8	95793334	Missense_Mutation	SNP	A	TCGA-BP-4761-01A-01D-1366-10	610231	95793334	50570688	49	20065											
RIMS2	9699	hgsc.bcm.edu	37	8	104987673	104987673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	104987673	C	A	104987673	3	1	327	1	0	0	0	0	1	0	0	0	13381	826	29	4	3054	4	RIMS2	8	104987673	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	9194339	104987673	41376349	50	20066											
DEPDC6	0	hgsc.bcm.edu;ucsc.edu	37	8	121021276	121021276	+	Silent	SNP	T	T	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	121021276	T	C	121021276	2	2	327	1	0	0	0	0	0	0	0	1	4445	1683	59	3		3	DEPDC6	8	121021276	Silent	SNP	T	TCGA-BP-4761-01A-01D-1366-10	16033603	121021276	25342746	51	20067											
SMARCA2	6595	hgsc.bcm.edu;ucsc.edu	37	9	2081838	2081838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	2081838	G	T	2081838	3	4	327	1	0	0	0	0	1	0	0	0	14782	1232	43	4	2245	4	SMARCA2	9	2081838	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10		2081838	139131593	52	20068											
DOLPP1	57171	hgsc.bcm.edu	37	9	131848530	131848530	+	Missense_Mutation	SNP	C	C	T	rs140111931		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	131848530	C	T	131848530	3	4	327	1	0	0	0	0	1	0	0	0	4706	623	22	2	596	2	DOLPP1	9	131848530	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	129766692	131848530	9364901	53	20069											
ITIH2	3698	hgsc.bcm.edu;ucsc.edu	37	10	7780665	7780665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	7780665	T	C	7780665	3	2	327	1	0	0	0	0	1	0	0	0	7911	1464	51	3	2101	3	ITIH2	10	7780665	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10		7780665	127754082	54	20070											
CDHR1	92211	hgsc.bcm.edu;ucsc.edu	37	10	85960364	85960364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	85960364	C	T	85960364	3	4	327	1	0	0	0	0	1	0	0	0	3120	681	24	2	468	2	CDHR1	10	85960364	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	78179699	85960364	49574383	55	20071											
ACCSL	390110	hgsc.bcm.edu;ucsc.edu	37	11	44081417	44081417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	44081417	G	A	44081417	3	1	327	1	0	0	0	0	1	0	0	0	134	1175	41	2	1708	2	ACCSL	11	44081417	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10		44081417	90925099	56	20072											
NRXN2	9379	hgsc.bcm.edu;ucsc.edu	37	11	64417942	64417942	+	Silent	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	64417942	G	A	64417942	2	1	327	1	0	0	0	0	0	0	0	1	10673	1074	38	1		1	NRXN2	11	64417942	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10	20336525	64417942	70588574	57	20073											
ARHGAP20	57569	hgsc.bcm.edu;ucsc.edu	37	11	110451543	110451543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	110451543	G	T	110451543	3	4	327	1	0	0	0	0	1	0	0	0	870	1020	36	4	1452	4	ARHGAP20	11	110451543	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	46033601	110451543	24554973	58	20074											
DDX23	9416	hgsc.bcm.edu;ucsc.edu	37	12	49224320	49224320	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	49224320	G	C	49224320	3	2	327	1	0	0	0	0	1	0	0	0	4352	1232	43	4	71	4	DDX23	12	49224320	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10		49224320	84627575	59	20075											
LIMA1	51474	hgsc.bcm.edu	37	12	50589647	50589647	+	Silent	SNP	C	C	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	50589647	C	T	50589647	2	4	327	1	0	0	0	0	0	0	0	1	8803	581	21	2		2	LIMA1	12	50589647	Silent	SNP	C	TCGA-BP-4761-01A-01D-1366-10	1365327	50589647	83262248	60	20076											
KDM2B	84678	hgsc.bcm.edu;ucsc.edu	37	12	122013702	122013702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	122013702	C	A	122013702	3	1	327	1	0	0	0	0	1	0	0	0	8132	855	30	4	3812	4	KDM2B	12	122013702	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	71424055	122013702	11838193	61	20077											
MPHOSPH8	54737	hgsc.bcm.edu	37	13	20208028	20208028	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	20208028	C	G	20208028	3	3	327	1	0	0	0	0	1	0	0	0	9734	739	26	4	142	4	MPHOSPH8	13	20208028	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10		20208028	94961850	62	20078											
IRF9	10379	hgsc.bcm.edu;ucsc.edu	37	14	24632648	24632648	+	Silent	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	24632648	G	A	24632648	2	1	327	1	0	0	0	0	0	0	0	1	7844	1165	41	2		2	IRF9	14	24632648	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10		24632648	82716892	63	20079											
DUOXA1	90527	hgsc.bcm.edu;ucsc.edu	37	15	45412946	45412946	+	Missense_Mutation	SNP	C	C	T	rs75981505	byfrequency;by1000genomes;alternate_allele	TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	45412946	C	T	45412946	3	4	327	1	0	0	0	0	1	0	0	0	4804	768	27	1	1073	1	DUOXA1	15	45412946	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10		45412946	57118446	64	20080											
RBBP6	5930	hgsc.bcm.edu;ucsc.edu	37	16	24580912	24580912	+	Silent	SNP	A	A	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	24580912	A	G	24580912	2	3	327	1	0	0	0	0	0	0	0	1	13116	69	3	3		3	RBBP6	16	24580912	Silent	SNP	A	TCGA-BP-4761-01A-01D-1366-10		24580912	65773841	65	20081											
ZNF423	23090	hgsc.bcm.edu;ucsc.edu	37	16	49670635	49670635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	49670635	T	C	49670635	3	2	327	1	0	0	0	0	1	0	0	0	17910	1763	61	3	1446	3	ZNF423	16	49670635	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	25089723	49670635	40684118	66	20082											
BANP	54971	hgsc.bcm.edu	37	16	88052146	88052146	+	Silent	SNP	C	C	T	rs17850504	bycluster;byfrequency;by1000genomes	TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	88052146	C	T	88052146	2	4	327	1	0	0	0	0	0	0	0	1	1310	639	23	1		1	BANP	16	88052146	Silent	SNP	C	TCGA-BP-4761-01A-01D-1366-10	38381511	88052146	2302607	67	20083											
DEF8	54849	hgsc.bcm.edu	37	16	90020723	90020723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	90020723	G	T	90020723	3	4	327	1	0	0	0	0	1	0	0	0	4389	1020	36	4	252	4	DEF8	16	90020723	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	1968577	90020723	334030	68	20084											
ITGAE	3682	hgsc.bcm.edu;ucsc.edu	37	17	3667207	3667207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	3667207	T	C	3667207	3	2	327	1	0	0	0	0	1	0	0	0	7892	1464	51	3	3452	3	ITGAE	17	3667207	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10		3667207	77528003	69	20085											
GPR172B	0	hgsc.bcm.edu	37	17	4936580	4936582	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	-	4936582	GCC	-	4936580	7	5	327	1	0	1	0	1	0	0	0	0	6677	1306	46	0	244	0	GPR172B	17	4936580	In_Frame_Del	DEL	GCC	TCGA-BP-4761-01A-01D-1366-10	1269373	4936580	76258630	70	20086											
PIK3R5	23533	hgsc.bcm.edu	37	17	8791992	8791992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	8791992	A	C	8791992	3	2	327	1	0	0	0	0	1	0	0	0	11929	304	11	5	1570	5	PIK3R5	17	8791992	Missense_Mutation	SNP	A	TCGA-BP-4761-01A-01D-1366-10	3855412	8791992	72403218	71	20087											
NBR1	4077	hgsc.bcm.edu;ucsc.edu	37	17	41327859	41327859	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	41327859	A	T	41327859	3	4	327	1	0	0	0	0	1	0	0	0	10207	101	4	5	45	5	NBR1	17	41327859	Missense_Mutation	SNP	A	TCGA-BP-4761-01A-01D-1366-10	32535867	41327859	39867351	72	20088											
GPATCH8	23131	hgsc.bcm.edu;ucsc.edu	37	17	42475998	42475998	+	Silent	SNP	C	C	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	42475998	C	T	42475998	2	4	327	1	0	0	0	0	0	0	0	1	6601	842	30	2		2	GPATCH8	17	42475998	Silent	SNP	C	TCGA-BP-4761-01A-01D-1366-10	1148139	42475998	38719212	73	20089											
SP2	6668	hgsc.bcm.edu;ucsc.edu	37	17	45993786	45993786	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	45993786	C	G	45993786	3	3	327	1	0	0	0	0	1	0	0	0	14977	855	30	4	359	4	SP2	17	45993786	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10	3517788	45993786	35201424	74	20090											
APPBP2	10513	hgsc.bcm.edu;ucsc.edu	37	17	58529363	58529363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	58529363	T	G	58529363	3	3	327	1	0	0	0	0	1	0	0	0	816	1812	63	5	383	5	APPBP2	17	58529363	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	12535577	58529363	22665847	75	20091											
NARF	26502	hgsc.bcm.edu;ucsc.edu	37	17	80430448	80430448	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	80430448	T	A	80430448	3	1	327	1	0	0	0	0	1	0	0	0	10174	1522	53	5	412	5	NARF	17	80430448	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	21901085	80430448	764762	76	20092											
MEGF8	1954	hgsc.bcm.edu	37	19	42840365	42840365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	42840365	A	G	42840365	3	3	327	1	0	0	0	0	1	0	0	0	9470	159	6	3	1133	3	MEGF8	19	42840365	Missense_Mutation	SNP	A	TCGA-BP-4761-01A-01D-1366-10		42840365	16288618	77	20093											
ZFP112	7771	hgsc.bcm.edu;ucsc.edu	37	19	44832958	44832958	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	44832958	T	A	44832958	3	1	327	1	0	0	0	0	1	0	0	0	17650	1464	51	5	1375	5	ZFP112	19	44832958	Missense_Mutation	SNP	T	TCGA-BP-4761-01A-01D-1366-10	1992593	44832958	14296025	78	20094											
PPP2R1A	5518	hgsc.bcm.edu;ucsc.edu	37	19	52729234	52729234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	G	52729234	A	G	52729234	3	3	327	1	0	0	0	0	1	0	0	0	12392	346	12	3	1828	3	PPP2R1A	19	52729234	Missense_Mutation	SNP	A	TCGA-BP-4761-01A-01D-1366-10	7896276	52729234	6399749	79	20095											
PTPRT	11122	hgsc.bcm.edu;ucsc.edu	37	20	41385109	41385109	+	Silent	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	41385109	G	A	41385109	2	1	327	1	0	0	0	0	0	0	0	1	12825	1048	37	1		1	PTPRT	20	41385109	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10		41385109	21640411	80	20096											
SYCP2	10388	hgsc.bcm.edu;ucsc.edu	37	20	58455486	58455486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	58455486	G	T	58455486	3	4	327	1	0	0	0	0	1	0	0	0	15444	1029	36	4	1839	4	SYCP2	20	58455486	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	17070377	58455486	4570034	81	20097											
CCT8L2	150160	hgsc.bcm.edu	37	22	17072822	17072822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	17072822	C	T	17072822	3	4	327	1	0	0	0	0	1	0	0	0	2963	768	27	1	1058	1	CCT8L2	22	17072822	Missense_Mutation	SNP	C	TCGA-BP-4761-01A-01D-1366-10		17072822	34231744	82	20098											
PDGFB	5155	hgsc.bcm.edu	37	22	39621821	39621821	+	Silent	SNP	C	C	A	rs148231529	alternate_allele	TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	39621821	C	A	39621821	2	1	327	1	0	0	0	0	0	0	0	1	11665	842	30	4		4	PDGFB	22	39621821	Silent	SNP	C	TCGA-BP-4761-01A-01D-1366-10	22548999	39621821	11682745	83	20099											
SEPT3	55964	hgsc.bcm.edu;ucsc.edu	37	22	42383241	42383241	+	Silent	SNP	G	G	A	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	A	42383241	G	A	42383241	2	1	327	1	0	0	0	0	0	0	0	1	14078	1277	45	2		2	SEPT3	22	42383241	Silent	SNP	G	TCGA-BP-4761-01A-01D-1366-10	2761420	42383241	8921325	84	20100											
TUBGCP6	85378	hgsc.bcm.edu;ucsc.edu	37	22	50682713	50682713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	T	50682713	G	T	50682713	3	4	327	1	0	0	0	0	1	0	0	0	16782	1000	35	4	5383	4	TUBGCP6	22	50682713	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10	8299472	50682713	621853	85	20101											
ACSL4	2182	hgsc.bcm.edu	37	X	108926066	108926066	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4761-01A-01D-1366-10	TCGA-BP-4761-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9f040c94-45f7-4bf8-8942-874f64582355	31b833b1-bdf1-414a-9a37-36039d4a7204	C	108926066	G	C	108926066	3	2	327	1	0	0	0	0	1	0	0	0	179	1020	36	4	1776	4	ACSL4	23	108926066	Missense_Mutation	SNP	G	TCGA-BP-4761-01A-01D-1366-10		108926066	46344494	86	20102											
CLCNKA	1187	hgsc.bcm.edu	37	1	16356522	16356522	+	Missense_Mutation	SNP	A	A	G	rs71587743	alternate_allele	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	16356522	A	G	16356522	3	3	328	1	0	0	0	0	1	0	0	0	3471	275	10	3	1410	3	CLCNKA	1	16356522	Missense_Mutation	SNP	A	TCGA-BP-4762-01A-02D-1366-10		16356522	232894099	1	20103											
TAS1R2	80834	hgsc.bcm.edu	37	1	19168259	19168259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	19168259	C	G	19168259	3	3	328	1	0	0	0	0	1	0	0	0	15575	884	31	4	972	4	TAS1R2	1	19168259	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	2811737	19168259	230082362	2	20104											
PTPRU	10076	hgsc.bcm.edu;ucsc.edu	37	1	29618444	29618444	+	Missense_Mutation	SNP	C	C	A	rs41302038	byfrequency;by1000genomes;alternate_allele	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	29618444	C	A	29618444	3	1	328	1	0	0	0	0	1	0	0	0	12826	767	27	4	2474	4	PTPRU	1	29618444	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	10450185	29618444	219632177	3	20105											
CSMD2	114784	hgsc.bcm.edu	37	1	34083218	34083218	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	34083218	C	T	34083218	5	4	328	1	0	0	0	0	0	0	1	0	3947	811	28	2	4884	2	CSMD2	1	34083218	Splice_Site	SNP	C	TCGA-BP-4762-01A-02D-1366-10	4464774	34083218	215167403	4	20106											
ZMYM4	9202	hgsc.bcm.edu;ucsc.edu	37	1	35871038	35871038	+	Silent	SNP	C	C	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	C	G	C	C	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	35871038	C	G	35871038	2	3	328	1	0	0	0	0	0	0	0	1	17714	900	32	4		4	ZMYM4	1	35871038	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10	1787820	35871038	213379583	5	20107											
TRIT1	54802	hgsc.bcm.edu;ucsc.edu	37	1	40313333	40313333	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	40313333	C	A	40313333	5	1	328	1	0	0	0	0	0	0	1	0	16572	811	28	4	608	4	TRIT1	1	40313333	Splice_Site	SNP	C	TCGA-BP-4762-01A-02D-1366-10	4442295	40313333	208937288	6	20108											
NRD1	4898	hgsc.bcm.edu;ucsc.edu	37	1	52257262	52257262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	52257262	G	A	52257262	3	1	328	1	0	0	0	0	1	0	0	0	10652	1319	46	2	527	2	NRD1	1	52257262	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	11943929	52257262	196993359	7	20109											
CCBL2	56267	hgsc.bcm.edu;ucsc.edu	37	1	89430535	89430535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	89430535	C	T	89430535	3	4	328	1	0	0	0	0	1	0	0	0	2735	797	28	2	974	2	CCBL2	1	89430535	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	37173273	89430535	159820086	8	20110											
AP4B1	10717	hgsc.bcm.edu;ucsc.edu	37	1	114440494	114440494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	114440494	G	A	114440494	3	1	328	1	0	0	0	0	1	0	0	0	751	1203	42	2	965	2	AP4B1	1	114440494	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	25009959	114440494	134810127	9	20111											
NBPF7	343505	hgsc.bcm.edu;ucsc.edu	37	1	120384043	120384043	+	Silent	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	120384043	C	T	120384043	2	4	328	1	0	0	0	0	0	0	0	1	10205	738	26	2		2	NBPF7	1	120384043	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10	5943549	120384043	128866578	10	20112											
BCL9	607	hgsc.bcm.edu	37	1	147095956	147095956	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	147095956	T	G	147095956	3	3	328	1	0	0	0	0	1	0	0	0	1381	1693	59	5	3503	5	BCL9	1	147095956	Missense_Mutation	SNP	T	TCGA-BP-4762-01A-02D-1366-10	26711913	147095956	102154665	11	20113											
BAT2L2	0	hgsc.bcm.edu;ucsc.edu	37	1	171527018	171527018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	171527018	G	T	171527018	3	4	328	1	0	0	0	0	1	0	0	0	1321	971	34	4	5831	4	BAT2L2	1	171527018	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	24431062	171527018	77723603	12	20114											
PTPRC	5788	hgsc.bcm.edu;ucsc.edu	37	1	198704330	198704330	+	Silent	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	198704330	C	T	198704330	2	4	328	1	0	0	0	0	0	0	0	1	12810	506	18	2		2	PTPRC	1	198704330	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10	27177312	198704330	50546291	13	20115											
CHI3L1	1116	hgsc.bcm.edu	37	1	203149655	203149655	+	Silent	SNP	T	T	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	203149655	T	G	203149655	2	3	328	1	0	0	0	0	0	0	0	1	3342	1567	55	5		5	CHI3L1	1	203149655	Silent	SNP	T	TCGA-BP-4762-01A-02D-1366-10	4445325	203149655	46100966	14	20116											
WDR26	80232	hgsc.bcm.edu;ucsc.edu	37	1	224606085	224606085	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	224606085	C	G	224606085	3	3	328	1	0	0	0	0	1	0	0	0	17295	652	23	4	1125	4	WDR26	1	224606085	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	21456430	224606085	24644536	15	20117											
KHK	3795	hgsc.bcm.edu	37	2	27319663	27319663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	27319663	C	G	27319663	3	3	328	1	0	0	0	0	1	0	0	0	8156	477	17	4	564	4	KHK	2	27319663	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10		27319663	215879710	16	20118											
BIRC6	57448	hgsc.bcm.edu;ucsc.edu	37	2	32613998	32613998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	32613998	C	T	32613998	3	4	328	1	0	0	0	0	1	0	0	0	1438	652	23	1	840	1	BIRC6	2	32613998	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	5294335	32613998	210585375	17	20119											
ATP6V1B1	525	hgsc.bcm.edu;ucsc.edu	37	2	71188741	71188741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	71188741	G	A	71188741	3	1	328	1	0	0	0	0	1	0	0	0	1178	971	34	2	733	2	ATP6V1B1	2	71188741	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	38574743	71188741	172010632	18	20120											
DGUOK	1716	hgsc.bcm.edu;ucsc.edu	37	2	74173854	74173854	+	Silent	SNP	T	T	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	74173854	T	A	74173854	2	1	328	1	0	0	0	0	0	0	0	1	4477	1567	55	5		5	DGUOK	2	74173854	Silent	SNP	T	TCGA-BP-4762-01A-02D-1366-10	2985113	74173854	169025519	19	20121											
CCDC93	54520	hgsc.bcm.edu;ucsc.edu	37	2	118693136	118693136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	118693136	C	T	118693136	3	4	328	1	0	0	0	0	1	0	0	0	2874	710	25	2	244	2	CCDC93	2	118693136	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	44519282	118693136	124506237	20	20122											
NCKAP1	10787	hgsc.bcm.edu;ucsc.edu	37	2	183806831	183806831	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	183806831	C	G	183806831	3	3	328	1	0	0	0	0	1	0	0	0	10228	913	32	4	756	4	NCKAP1	2	183806831	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	65113695	183806831	59392542	21	20123											
EFHB	151651	hgsc.bcm.edu;ucsc.edu	37	3	19956903	19956903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	19956903	A	G	19956903	3	3	328	1	0	0	0	0	1	0	0	0	4947	449	16	3	1357	3	EFHB	3	19956903	Missense_Mutation	SNP	A	TCGA-BP-4762-01A-02D-1366-10		19956903	178065527	22	20124											
MUC13	56667	hgsc.bcm.edu	37	3	124653519	124653519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	124653519	A	G	124653519	3	3	328	1	0	0	0	0	1	0	0	0	9978	72	3	3	1541	3	MUC13	3	124653519	Missense_Mutation	SNP	A	TCGA-BP-4762-01A-02D-1366-10	104696616	124653519	73368911	23	20125											
ZBTB38	253461	hgsc.bcm.edu;ucsc.edu	37	3	141163555	141163555	+	Silent	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	141163555	G	A	141163555	2	1	328	1	0	0	0	0	0	0	0	1	17551	991	35	2		2	ZBTB38	3	141163555	Silent	SNP	G	TCGA-BP-4762-01A-02D-1366-10	16510036	141163555	56858875	24	20126											
ZNF732	654254	hgsc.bcm.edu	37	4	265967	265967	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	265967	C	G	265967	3	3	328	1	0	0	0	0	1	0	0	0	18135	922	32	4	1082	4	ZNF732	4	265967	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10		265967	190888309	25	20127											
ZNF131	7690	hgsc.bcm.edu;ucsc.edu	37	5	43173498	43173498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	43173498	G	A	43173498	3	1	328	1	0	0	0	0	1	0	0	0	17733	1319	46	2	1053	2	ZNF131	5	43173498	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10		43173498	137741762	26	20128											
WDR55	54853	hgsc.bcm.edu;ucsc.edu	37	5	140048292	140048292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	140048292	G	A	140048292	3	1	328	1	0	0	0	0	1	0	0	0	17319	1203	42	2	490	2	WDR55	5	140048292	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	96874794	140048292	40866968	27	20129											
PCDHB7	56129	hgsc.bcm.edu	37	5	140553793	140553793	+	Silent	SNP	T	T	C	rs114684348	byfrequency	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	140553793	T	C	140553793	2	2	328	1	0	0	0	0	0	0	0	1	11554	1809	63	3		3	PCDHB7	5	140553793	Silent	SNP	T	TCGA-BP-4762-01A-02D-1366-10	505501	140553793	40361467	28	20130											
CYFIP2	26999	hgsc.bcm.edu	37	5	156738710	156738710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	156738710	A	G	156738710	3	3	328	1	0	0	0	0	1	0	0	0	4140	101	4	3	1069	3	CYFIP2	5	156738710	Missense_Mutation	SNP	A	TCGA-BP-4762-01A-02D-1366-10	16184917	156738710	24176550	29	20131											
ODZ2	0	hgsc.bcm.edu	37	5	167617459	167617459	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	167617459	G	A	167617459	4	1	328	1	0	0	0	0	0	1	0	0	10842	1357	47	2	2714	2	ODZ2	5	167617459	Nonsense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	10878749	167617459	13297801	30	20132											
ERVFRDE1	0	hgsc.bcm.edu;ucsc.edu	37	6	11105373	11105373	+	Silent	SNP	A	A	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	11105373	A	C	11105373	2	2	328	1	0	0	0	0	0	0	0	1	5248	59	3	5		5	ERVFRDE1	6	11105373	Silent	SNP	A	TCGA-BP-4762-01A-02D-1366-10		11105373	160009694	31	20133											
PKHD1	5314	hgsc.bcm.edu;ucsc.edu	37	6	51890586	51890586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	51890586	T	C	51890586	3	2	328	1	0	0	0	0	1	0	0	0	11978	1580	55	3	8385	3	PKHD1	6	51890586	Missense_Mutation	SNP	T	TCGA-BP-4762-01A-02D-1366-10	40785213	51890586	119224481	32	20134											
PLEKHG1	57480	hgsc.bcm.edu	37	6	151161484	151161484	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	151161484	A	C	151161484	3	2	328	1	0	0	0	0	1	0	0	0	12075	15	1	5	3668	5	PLEKHG1	6	151161484	Missense_Mutation	SNP	A	TCGA-BP-4762-01A-02D-1366-10	99270898	151161484	19953583	33	20135											
NEUROD6	63974	hgsc.bcm.edu;ucsc.edu	37	7	31378184	31378184	+	Silent	SNP	G	G	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	31378184	G	T	31378184	2	4	328	1	0	0	0	0	0	0	0	1	10358	987	35	4		4	NEUROD6	7	31378184	Silent	SNP	G	TCGA-BP-4762-01A-02D-1366-10		31378184	127760479	34	20136											
COBL	23242	hgsc.bcm.edu	37	7	51098568	51098570	+	In_Frame_Del	DEL	TCT	TCT	-	rs142060269	bycluster;by1000genomes	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	-	51098570	TCT	-	51098568	7	5	328	1	0	1	0	1	0	0	0	0	3655	1667	58	0	2360	0	COBL	7	51098568	In_Frame_Del	DEL	TCT	TCGA-BP-4762-01A-02D-1366-10	19720384	51098568	108040095	35	20137											
FAM200A	221786	hgsc.bcm.edu	37	7	99145240	99145240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	99145240	G	T	99145240	3	4	328	1	0	0	0	0	1	0	0	0	5540	1319	46	4	934	4	FAM200A	7	99145240	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	48046672	99145240	59993423	36	20138											
NOS3	4846	hgsc.bcm.edu	37	7	150699340	150699340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	150699340	T	C	150699340	3	2	328	1	0	0	0	0	1	0	0	0	10551	1696	59	3	1750	3	NOS3	7	150699340	Missense_Mutation	SNP	T	TCGA-BP-4762-01A-02D-1366-10	51554100	150699340	8439323	37	20139											
PTK2B	2185	hgsc.bcm.edu	37	8	27295368	27295368	+	Silent	SNP	C	C	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	27295368	C	A	27295368	2	1	328	1	0	0	0	0	0	0	0	1	12774	668	24	4		4	PTK2B	8	27295368	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10		27295368	119068654	38	20140											
ST18	9705	hgsc.bcm.edu	37	8	53074097	53074097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	53074097	A	C	53074097	3	2	328	1	0	0	0	0	1	0	0	0	15224	14	1	5	1763	5	ST18	8	53074097	Missense_Mutation	SNP	A	TCGA-BP-4762-01A-02D-1366-10	25778729	53074097	93289925	39	20141											
MYC	4609	hgsc.bcm.edu	37	8	128750929	128750929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	128750929	G	T	128750929	3	4	328	1	0	0	0	0	1	0	0	0	10023	1087	38	4	472	4	MYC	8	128750929	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	75676832	128750929	17613093	40	20142											
KCNK9	51305	hgsc.bcm.edu	37	8	140630792	140630792	+	Silent	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	140630792	C	T	140630792	2	4	328	1	0	0	0	0	0	0	0	1	8079	796	28	2		2	KCNK9	8	140630792	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10	11879863	140630792	5733230	41	20143											
TJP2	9414	hgsc.bcm.edu;ucsc.edu	37	9	71867781	71867781	+	Silent	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	71867781	G	A	71867781	2	1	328	1	0	0	0	0	0	0	0	1	15942	1074	38	1		1	TJP2	9	71867781	Silent	SNP	G	TCGA-BP-4762-01A-02D-1366-10		71867781	69345650	42	20144											
ANP32B	10541	hgsc.bcm.edu	37	9	100777710	100777710	+	Missense_Mutation	SNP	T	T	A	rs112073824		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	100777710	T	A	100777710	3	1	328	1	0	0	0	0	1	0	0	0	706	1490	52	5	779	5	ANP32B	9	100777710	Missense_Mutation	SNP	T	TCGA-BP-4762-01A-02D-1366-10	28909929	100777710	40435721	43	20145											
ACTL7B	10880	hgsc.bcm.edu	37	9	111616989	111616989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	111616989	T	C	111616989	3	2	328	1	0	0	0	0	1	0	0	0	201	1580	55	3	29	3	ACTL7B	9	111616989	Missense_Mutation	SNP	T	TCGA-BP-4762-01A-02D-1366-10	10839279	111616989	29596442	44	20146											
C9orf171	389799	hgsc.bcm.edu	37	9	135413022	135413022	+	Silent	SNP	C	C	A	rs182716958	by1000genomes	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	135413022	C	A	135413022	2	1	328	1	0	0	0	0	0	0	0	1	2472	643	23	4		4	C9orf171	9	135413022	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10	23796033	135413022	5800409	45	20147											
ARHGAP12	94134	hgsc.bcm.edu;ucsc.edu	37	10	32098018	32098018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	32098018	T	C	32098018	3	2	328	1	0	0	0	0	1	0	0	0	865	1406	49	3	385	3	ARHGAP12	10	32098018	Missense_Mutation	SNP	T	TCGA-BP-4762-01A-02D-1366-10		32098018	103436729	46	20148											
CDHR1	92211	hgsc.bcm.edu;ucsc.edu	37	10	85961624	85961624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	85961624	C	T	85961624	3	4	328	1	0	0	0	0	1	0	0	0	3120	739	26	2	613	2	CDHR1	10	85961624	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	53863606	85961624	49573123	47	20149											
SOX6	55553	hgsc.bcm.edu	37	11	16010674	16010674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	16010674	C	T	16010674	3	4	328	1	0	0	0	0	1	0	0	0	14968	768	27	1	663	1	SOX6	11	16010674	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10		16010674	118995842	48	20150											
MTA2	9219	hgsc.bcm.edu	37	11	62361740	62361740	+	Missense_Mutation	SNP	T	T	A	rs112851477		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	62361740	T	A	62361740	3	1	328	1	0	0	0	0	1	0	0	0	9916	1609	56	5	182	5	MTA2	11	62361740	Missense_Mutation	SNP	T	TCGA-BP-4762-01A-02D-1366-10	46351066	62361740	72644776	49	20151											
PPP2R5B	5526	hgsc.bcm.edu;ucsc.edu	37	11	64694267	64694267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	64694267	G	A	64694267	3	1	328	1	0	0	0	0	1	0	0	0	12403	1203	42	2	289	2	PPP2R5B	11	64694267	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	2332527	64694267	70312249	50	20152											
FOXR1	283150	hgsc.bcm.edu;ucsc.edu	37	11	118850320	118850320	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	118850320	G	C	118850320	3	2	328	1	0	0	0	0	1	0	0	0	6038	1203	42	4	567	4	FOXR1	11	118850320	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	54156053	118850320	16156196	51	20153											
GLB1L2	89944	hgsc.bcm.edu	37	11	134217318	134217318	+	Silent	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	134217318	G	A	134217318	2	1	328	1	0	0	0	0	0	0	0	1	6436	1306	46	2		2	GLB1L2	11	134217318	Silent	SNP	G	TCGA-BP-4762-01A-02D-1366-10	15366998	134217318	789198	52	20154											
ATN1	1822	hgsc.bcm.edu	37	12	7048337	7048337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	7048337	G	A	7048337	3	1	328	1	0	0	0	0	1	0	0	0	1111	1319	46	2	3233	2	ATN1	12	7048337	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10		7048337	126803558	53	20155											
RPAP3	79657	hgsc.bcm.edu;ucsc.edu	37	12	48091482	48091482	+	Silent	SNP	A	A	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	48091482	A	T	48091482	2	4	328	1	0	0	0	0	0	0	0	1	13556	117	5	5		5	RPAP3	12	48091482	Silent	SNP	A	TCGA-BP-4762-01A-02D-1366-10	41043145	48091482	85760413	54	20156											
GPR84	53831	hgsc.bcm.edu;ucsc.edu	37	12	54757068	54757068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	54757068	C	A	54757068	3	1	328	1	0	0	0	0	1	0	0	0	6721	594	21	4	626	4	GPR84	12	54757068	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	6665586	54757068	79094827	55	20157											
LRP1	4035	hgsc.bcm.edu;ucsc.edu	37	12	57548278	57548278	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	57548278	G	C	57548278	3	2	328	1	0	0	0	0	1	0	0	0	8958	1290	45	4	1051	4	LRP1	12	57548278	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	2791210	57548278	76303617	56	20158											
LATS2	26524	hgsc.bcm.edu;ucsc.edu	37	13	21557521	21557521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	21557521	A	G	21557521	3	3	328	1	0	0	0	0	1	0	0	0	8654	188	7	3	958	3	LATS2	13	21557521	Missense_Mutation	SNP	A	TCGA-BP-4762-01A-02D-1366-10		21557521	93612357	57	20159											
HSPH1	10808	hgsc.bcm.edu;ucsc.edu	37	13	31725283	31725283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	31725283	C	T	31725283	3	4	328	1	0	0	0	0	1	0	0	0	7438	884	31	1	1915	1	HSPH1	13	31725283	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	10167762	31725283	83444595	58	20160											
INTS6	26512	hgsc.bcm.edu;ucsc.edu	37	13	51943308	51943308	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	51943308	G	C	51943308	3	2	328	1	0	0	0	0	1	0	0	0	7789	1348	47	4	432	4	INTS6	13	51943308	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	20218025	51943308	63226570	59	20161											
PCDH20	64881	hgsc.bcm.edu;ucsc.edu	37	13	61986576	61986576	+	Silent	SNP	G	G	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	61986576	G	T	61986576	2	4	328	1	0	0	0	0	0	0	0	1	11522	987	35	4		4	PCDH20	13	61986576	Silent	SNP	G	TCGA-BP-4762-01A-02D-1366-10	10043268	61986576	53183302	60	20162											
HEATR5A	25938	hgsc.bcm.edu	37	14	31852794	31852794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	31852794	A	C	31852794	3	2	328	1	0	0	0	0	1	0	0	0	7038	14	1	5	4719	5	HEATR5A	14	31852794	Missense_Mutation	SNP	A	TCGA-BP-4762-01A-02D-1366-10		31852794	75496746	61	20163											
SYNE2	23224	hgsc.bcm.edu;ucsc.edu	37	14	64516356	64516356	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	64516356	A	T	64516356	4	4	328	1	0	0	0	0	0	1	0	0	15458	247	9	5	7587	5	SYNE2	14	64516356	Nonsense_Mutation	SNP	A	TCGA-BP-4762-01A-02D-1366-10	32663562	64516356	42833184	62	20164											
RPS6KL1	83694	hgsc.bcm.edu;ucsc.edu	37	14	75376624	75376624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	75376624	G	T	75376624	3	4	328	1	0	0	0	0	1	0	0	0	13672	1261	44	4	850	4	RPS6KL1	14	75376624	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	10860268	75376624	31972916	63	20165											
SECISBP2L	9728	hgsc.bcm.edu;ucsc.edu	37	15	49309095	49309095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	49309095	C	T	49309095	3	4	328	1	0	0	0	0	1	0	0	0	14020	710	25	2	1972	2	SECISBP2L	15	49309095	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10		49309095	53222297	64	20166											
GLCE	26035	hgsc.bcm.edu	37	15	69561195	69561195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	69561195	T	C	69561195	3	2	328	1	0	0	0	0	1	0	0	0	6439	1696	59	3	1476	3	GLCE	15	69561195	Missense_Mutation	SNP	T	TCGA-BP-4762-01A-02D-1366-10	20252100	69561195	32970197	65	20167											
AKAP13	11214	hgsc.bcm.edu	37	15	86123926	86123926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	86123926	C	T	86123926	3	4	328	1	0	0	0	0	1	0	0	0	449	739	26	2	2649	2	AKAP13	15	86123926	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	16562731	86123926	16407466	66	20168											
CRAMP1L	57585	hgsc.bcm.edu	37	16	1706435	1706435	+	Silent	SNP	C	C	T	rs61739874	bycluster;byfrequency;by1000genomes	TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	1706435	C	T	1706435	2	4	328	1	0	0	0	0	0	0	0	1	3848	506	18	2		2	CRAMP1L	16	1706435	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10		1706435	88648318	67	20169											
CREBBP	1387	hgsc.bcm.edu	37	16	3820642	3820642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	3820642	G	T	3820642	3	4	328	1	0	0	0	0	1	0	0	0	3863	1232	43	4	4591	4	CREBBP	16	3820642	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	2114207	3820642	86534111	68	20170											
TNRC6A	27327	hgsc.bcm.edu;ucsc.edu	37	16	24788558	24788558	+	Silent	SNP	T	T	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	24788558	T	A	24788558	2	1	328	1	0	0	0	0	0	0	0	1	16352	1567	55	5		5	TNRC6A	16	24788558	Silent	SNP	T	TCGA-BP-4762-01A-02D-1366-10	20967916	24788558	65566195	69	20171											
BCL7C	9274	hgsc.bcm.edu	37	16	30899307	30899307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	30899307	G	A	30899307	3	1	328	1	0	0	0	0	1	0	0	0	1380	1232	43	2	124	2	BCL7C	16	30899307	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	6110749	30899307	59455446	70	20172											
GAS8	2622	hgsc.bcm.edu;ucsc.edu	37	16	90104179	90104179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	90104179	G	A	90104179	3	1	328	1	0	0	0	0	1	0	0	0	6258	971	34	2	964	2	GAS8	16	90104179	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	59204872	90104179	250574	71	20173											
ALDH3A2	224	hgsc.bcm.edu	37	17	19568312	19568312	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	19568312	G	C	19568312	3	2	328	1	0	0	0	0	1	0	0	0	498	1290	45	4	1189	4	ALDH3A2	17	19568312	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10		19568312	61626898	72	20174											
FOXN1	8456	hgsc.bcm.edu	37	17	26861924	26861924	+	Silent	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	26861924	G	A	26861924	2	1	328	1	0	0	0	0	0	0	0	1	6026	1190	42	2		2	FOXN1	17	26861924	Silent	SNP	G	TCGA-BP-4762-01A-02D-1366-10	7293612	26861924	54333286	73	20175											
KIAA0100	9703	hgsc.bcm.edu;ucsc.edu	37	17	26961036	26961036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	26961036	C	T	26961036	3	4	328	1	0	0	0	0	1	0	0	0	8161	623	22	2	3660	2	KIAA0100	17	26961036	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	99112	26961036	54234174	74	20176											
PIPOX	51268	hgsc.bcm.edu;ucsc.edu	37	17	27379941	27379941	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	27379941	G	C	27379941	3	2	328	1	0	0	0	0	1	0	0	0	11950	933	33	4	277	4	PIPOX	17	27379941	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	418905	27379941	53815269	75	20177											
LIG3	3980	hgsc.bcm.edu	37	17	33326363	33326363	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	G	33326363	C	G	33326363	3	3	328	1	0	0	0	0	1	0	0	0	8789	506	18	4	2205	4	LIG3	17	33326363	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	5946422	33326363	47868847	76	20178											
NKIRAS2	28511	hgsc.bcm.edu;ucsc.edu	37	17	40174435	40174435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	40174435	C	T	40174435	3	4	328	1	0	0	0	0	1	0	0	0	10452	536	19	1	119	1	NKIRAS2	17	40174435	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	6848072	40174435	41020775	77	20179											
DYM	54808	hgsc.bcm.edu;ucsc.edu	37	18	46623772	46623772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	46623772	C	A	46623772	3	1	328	1	0	0	0	0	1	0	0	0	4842	695	24	4	157	4	DYM	18	46623772	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10		46623772	31453476	78	20180											
NKG7	4818	hgsc.bcm.edu	37	19	51875455	51875455	+	Silent	SNP	G	G	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	51875455	G	T	51875455	2	4	328	1	0	0	0	0	0	0	0	1	10450	1190	42	4		4	NKG7	19	51875455	Silent	SNP	G	TCGA-BP-4762-01A-02D-1366-10		51875455	7253528	79	20181											
RBCK1	10616	hgsc.bcm.edu	37	20	409176	409176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	409176	C	A	409176	3	1	328	1	0	0	0	0	1	0	0	0	13120	506	18	4	1308	4	RBCK1	20	409176	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10		409176	62616344	80	20182											
CSRP2BP	57325	hgsc.bcm.edu;ucsc.edu	37	20	18163922	18163922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	18163922	G	A	18163922	3	1	328	1	0	0	0	0	1	0	0	0	3970	1377	48	2	1994	2	CSRP2BP	20	18163922	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	17754746	18163922	44861598	81	20183											
GTPBP5	26164	hgsc.bcm.edu;ucsc.edu	37	20	60774274	60774274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	60774274	G	C	60774274	3	2	328	1	0	0	0	0	1	0	0	0	6890	1145	40	4	805	4	GTPBP5	20	60774274	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02D-1366-10	42610352	60774274	2251246	82	20184											
SMARCB1	6598	hgsc.bcm.edu	37	22	24176329	24176329	+	Silent	SNP	C	C	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	24176329	C	A	24176329	2	1	328	1	0	0	0	0	0	0	0	1	14787	782	27	4		4	SMARCB1	22	24176329	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10		24176329	27128237	83	20185											
SMC1A	8243	hgsc.bcm.edu;ucsc.edu	37	X	53436014	53436014	+	Silent	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	53436014	C	T	53436014	2	4	328	1	0	0	0	0	0	0	0	1	14794	796	28	2		2	SMC1A	23	53436014	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10		53436014	101834546	84	20186											
MED12	9968	hgsc.bcm.edu	37	X	70349584	70349584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	C	70349584	T	C	70349584	3	2	328	1	0	0	0	0	1	0	0	0	9435	1609	56	3	3852	3	MED12	23	70349584	Missense_Mutation	SNP	T	TCGA-BP-4762-01A-02D-1366-10	16913570	70349584	84920976	85	20187											
COL4A5	1287	hgsc.bcm.edu	37	X	107923920	107923920	+	Silent	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	107923920	C	T	107923920	2	4	328	1	0	0	0	0	0	0	0	1	3696	726	26	2		2	COL4A5	23	107923920	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10	37574336	107923920	47346640	86	20188											
SLC25A5	292	hgsc.bcm.edu;ucsc.edu	37	X	118604409	118604409	+	Silent	SNP	C	C	T	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	T	118604409	C	T	118604409	2	4	328	1	0	0	0	0	0	0	0	1	14525	639	23	1		1	SLC25A5	23	118604409	Silent	SNP	C	TCGA-BP-4762-01A-02D-1366-10	10680489	118604409	36666151	87	20189											
SRPK3	26576	hgsc.bcm.edu	37	X	153047007	153047007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4762-01A-02D-1366-10	TCGA-BP-4762-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d90b3ef0-c5fd-45ab-a86f-b47400bc3469	bab6d0f3-2893-4706-91ab-a79c383fdaaa	A	153047007	C	A	153047007	3	1	328	1	0	0	0	0	1	0	0	0	15173	594	21	4	248	4	SRPK3	23	153047007	Missense_Mutation	SNP	C	TCGA-BP-4762-01A-02D-1366-10	34442598	153047007	2223553	88	20190											
VHL	7428	hgsc.bcm.edu	37	3	10183851	10183851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4762-01A-02W-1362-10	TCGA-BP-4762-11A-01W-1363-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	2ef103f7-37e9-437b-bda4-62dbd0980dc0	eda59487-6daa-4ba5-9bf5-a412822188d8	C	10183851	G	C	10183851	3	2	329	1	0	0	0	0	1	0	0	0	17174	1087	38	4	322	4	VHL	3	10183851	Missense_Mutation	SNP	G	TCGA-BP-4762-01A-02W-1362-10		10183851	187838579	1	20191											
GNL2	29889	hgsc.bcm.edu;ucsc.edu	37	1	38058356	38058356	+	Silent	SNP	A	A	G	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	G	38058356	A	G	38058356	2	3	330	1	0	0	0	0	0	0	0	1	6543	59	3	3		3	GNL2	1	38058356	Silent	SNP	A	TCGA-BP-4763-01A-01D-1366-10		38058356	211192265	1	20192											
RNF220	55182	hgsc.bcm.edu	37	1	45098019	45098019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	C	45098019	T	C	45098019	3	2	330	1	0	0	0	0	1	0	0	0	13496	1841	64	3	929	3	RNF220	1	45098019	Missense_Mutation	SNP	T	TCGA-BP-4763-01A-01D-1366-10	7039663	45098019	204152602	2	20193											
KIAA0494	0	hgsc.bcm.edu;ucsc.edu	37	1	47144229	47144229	+	Silent	SNP	A	A	G	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	G	47144229	A	G	47144229	2	3	330	1	0	0	0	0	0	0	0	1	8186	30	2	3		3	KIAA0494	1	47144229	Silent	SNP	A	TCGA-BP-4763-01A-01D-1366-10	2046210	47144229	202106392	3	20194											
LRRC8C	84230	hgsc.bcm.edu	37	1	90179731	90179731	+	Silent	SNP	C	C	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	90179731	C	T	90179731	2	4	330	1	0	0	0	0	0	0	0	1	9030	610	22	2		2	LRRC8C	1	90179731	Silent	SNP	C	TCGA-BP-4763-01A-01D-1366-10	43035502	90179731	159070890	4	20195											
F5	2153	hgsc.bcm.edu;ucsc.edu	37	1	169499051	169499051	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	G	169499051	T	G	169499051	3	3	330	1	0	0	0	0	1	0	0	0	5350	1606	56	5	1500	5	F5	1	169499051	Missense_Mutation	SNP	T	TCGA-BP-4763-01A-01D-1366-10	79319320	169499051	79751570	5	20196											
C2orf78	388960	hgsc.bcm.edu	37	2	74042713	74042713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	74042713	C	T	74042713	3	4	330	1	0	0	0	0	1	0	0	0	2197	623	22	2	1373	2	C2orf78	2	74042713	Missense_Mutation	SNP	C	TCGA-BP-4763-01A-01D-1366-10		74042713	169156660	6	20197											
PRSS42	339906	hgsc.bcm.edu;ucsc.edu	37	3	46873491	46873491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	46873491	C	A	46873491	3	1	330	1	0	0	0	0	1	0	0	0	12638	855	30	4	221	4	PRSS42	3	46873491	Missense_Mutation	SNP	C	TCGA-BP-4763-01A-01D-1366-10		46873491	151148939	7	20198											
DUSP7	1849	hgsc.bcm.edu	37	3	52084903	52084903	+	Silent	SNP	C	C	A	rs149589220	alternate_allele	TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	52084903	C	A	52084903	2	1	330	1	0	0	0	0	0	0	0	1	4832	871	31	4		4	DUSP7	3	52084903	Silent	SNP	C	TCGA-BP-4763-01A-01D-1366-10	5211412	52084903	145937527	8	20199											
ATP8A1	10396	hgsc.bcm.edu;ucsc.edu	37	4	42487678	42487678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	42487678	C	T	42487678	3	4	330	1	0	0	0	0	1	0	0	0	1192	681	24	2	1387	2	ATP8A1	4	42487678	Missense_Mutation	SNP	C	TCGA-BP-4763-01A-01D-1366-10		42487678	148666598	9	20200											
PARP8	79668	hgsc.bcm.edu;ucsc.edu	37	5	50125784	50125784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	50125784	T	A	50125784	3	1	330	1	0	0	0	0	1	0	0	0	11472	1841	64	5	2308	5	PARP8	5	50125784	Missense_Mutation	SNP	T	TCGA-BP-4763-01A-01D-1366-10		50125784	130789476	10	20201											
DMXL1	1657	hgsc.bcm.edu;ucsc.edu	37	5	118456679	118456679	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	118456679	A	T	118456679	3	4	330	1	0	0	0	0	1	0	0	0	4596	217	8	5	981	5	DMXL1	5	118456679	Missense_Mutation	SNP	A	TCGA-BP-4763-01A-01D-1366-10	68330895	118456679	62458581	11	20202											
SERPINB1	1992	hgsc.bcm.edu;ucsc.edu	37	6	2838791	2838791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	2838791	A	T	2838791	3	4	330	1	0	0	0	0	1	0	0	0	14109	14	1	5	861	5	SERPINB1	6	2838791	Missense_Mutation	SNP	A	TCGA-BP-4763-01A-01D-1366-10		2838791	168276276	12	20203											
GNMT	27232	hgsc.bcm.edu	37	6	42931344	42931344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	42931344	G	A	42931344	3	1	330	1	0	0	0	0	1	0	0	0	6547	1261	44	2	810	2	GNMT	6	42931344	Missense_Mutation	SNP	G	TCGA-BP-4763-01A-01D-1366-10	40092553	42931344	128183723	13	20204											
PRDM13	59336	hgsc.bcm.edu;ucsc.edu	37	6	100057099	100057099	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	C	100057099	G	C	100057099	3	2	330	1	0	0	0	0	1	0	0	0	12464	1175	41	4	323	4	PRDM13	6	100057099	Missense_Mutation	SNP	G	TCGA-BP-4763-01A-01D-1366-10	57125755	100057099	71057968	14	20205											
SAMD5	389432	hgsc.bcm.edu	37	6	147830070	147830070	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	147830070	C	A	147830070	4	1	330	1	0	0	0	0	0	1	0	0	13836	718	25	4	8	4	SAMD5	6	147830070	Nonsense_Mutation	SNP	C	TCGA-BP-4763-01A-01D-1366-10	47772971	147830070	23284997	15	20206											
SPAM1	6677	hgsc.bcm.edu;ucsc.edu	37	7	123594563	123594563	+	Silent	SNP	G	G	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	123594563	G	A	123594563	2	1	330	1	0	0	0	0	0	0	0	1	14999	1281	45	2		2	SPAM1	7	123594563	Silent	SNP	G	TCGA-BP-4763-01A-01D-1366-10		123594563	35544100	16	20207											
GRM8	2918	hgsc.bcm.edu	37	7	126544621	126544621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	126544621	C	T	126544621	3	4	330	1	0	0	0	0	1	0	0	0	6810	710	25	2	1964	2	GRM8	7	126544621	Missense_Mutation	SNP	C	TCGA-BP-4763-01A-01D-1366-10	2950058	126544621	32594042	17	20208											
KIAA1429	25962	hgsc.bcm.edu;ucsc.edu	37	8	95539238	95539238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	C	95539238	T	C	95539238	3	2	330	1	0	0	0	0	1	0	0	0	8238	1493	52	3	4326	3	KIAA1429	8	95539238	Missense_Mutation	SNP	T	TCGA-BP-4763-01A-01D-1366-10		95539238	50824784	18	20209											
LRP12	29967	hgsc.bcm.edu;ucsc.edu	37	8	105544140	105544140	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	C	105544140	G	C	105544140	4	2	330	1	0	0	0	0	0	1	0	0	8961	1294	45	4	2472	4	LRP12	8	105544140	Nonsense_Mutation	SNP	G	TCGA-BP-4763-01A-01D-1366-10	10004902	105544140	40819882	19	20210											
KCNQ3	3786	hgsc.bcm.edu;ucsc.edu	37	8	133142094	133142094	+	Silent	SNP	G	G	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	133142094	G	A	133142094	2	1	330	1	0	0	0	0	0	0	0	1	8091	1103	39	1		1	KCNQ3	8	133142094	Silent	SNP	G	TCGA-BP-4763-01A-01D-1366-10	27597954	133142094	13221928	20	20211											
CCIN	881	hgsc.bcm.edu	37	9	36170277	36170277	+	Missense_Mutation	SNP	C	C	T	rs140883913	bycluster;byfrequency;by1000genomes	TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	36170277	C	T	36170277	3	4	330	1	0	0	0	0	1	0	0	0	2880	652	23	1	780	1	CCIN	9	36170277	Missense_Mutation	SNP	C	TCGA-BP-4763-01A-01D-1366-10		36170277	105043154	21	20212											
KIAA0368	23392	hgsc.bcm.edu;ucsc.edu	37	9	114199285	114199285	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	114199285	T	A	114199285	3	1	330	1	0	0	0	0	1	0	0	0	8178	1493	52	5	5052	5	KIAA0368	9	114199285	Missense_Mutation	SNP	T	TCGA-BP-4763-01A-01D-1366-10	78029008	114199285	27014146	22	20213											
ING4	51147	hgsc.bcm.edu;ucsc.edu	37	12	6762198	6762198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	6762198	G	A	6762198	3	1	330	1	0	0	0	0	1	0	0	0	7745	1086	38	1	474	1	ING4	12	6762198	Missense_Mutation	SNP	G	TCGA-BP-4763-01A-01D-1366-10		6762198	127089697	23	20214											
FOXO1	2308	hgsc.bcm.edu	37	13	41133892	41133892	+	Missense_Mutation	SNP	G	G	T	rs150896957	byfrequency;alternate_allele	TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	41133892	G	T	41133892	3	4	330	1	0	0	0	0	1	0	0	0	6030	1174	41	4	235	4	FOXO1	13	41133892	Missense_Mutation	SNP	G	TCGA-BP-4763-01A-01D-1366-10		41133892	74035986	24	20215											
SLC24A1	9187	hgsc.bcm.edu;ucsc.edu	37	15	65946267	65946267	+	Silent	SNP	C	C	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	65946267	C	T	65946267	2	4	330	1	0	0	0	0	0	0	0	1	14478	813	29	2		2	SLC24A1	15	65946267	Silent	SNP	C	TCGA-BP-4763-01A-01D-1366-10		65946267	36585125	25	20216											
PML	5371	hgsc.bcm.edu	37	15	74328116	74328116	+	Missense_Mutation	SNP	A	A	G	rs743580	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	G	74328116	A	G	74328116	3	3	330	1	0	0	0	0	1	0	0	0	12142	72	3	3	2478	3	PML	15	74328116	Missense_Mutation	SNP	A	TCGA-BP-4763-01A-01D-1366-10	8381849	74328116	28203276	26	20217											
EFTUD1	79631	hgsc.bcm.edu	37	15	82444107	82444107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	G	82444107	T	G	82444107	3	3	330	1	0	0	0	0	1	0	0	0	4962	1490	52	5	686	5	EFTUD1	15	82444107	Missense_Mutation	SNP	T	TCGA-BP-4763-01A-01D-1366-10	8115991	82444107	20087285	27	20218											
GFER	2671	hgsc.bcm.edu	37	16	2035868	2035868	+	Silent	SNP	C	C	T	rs1046502	bycluster;byfrequency;by1000genomes	TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	2035868	C	T	2035868	2	4	330	1	0	0	0	0	0	0	0	1	6345	811	28	2		2	GFER	16	2035868	Silent	SNP	C	TCGA-BP-4763-01A-01D-1366-10		2035868	88318885	28	20219											
WWP2	11060	hgsc.bcm.edu;ucsc.edu	37	16	69967969	69967969	+	Silent	SNP	C	C	A	rs8047888	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	69967969	C	A	69967969	2	1	330	1	0	0	0	0	0	0	0	1	17428	639	23	4		4	WWP2	16	69967969	Silent	SNP	C	TCGA-BP-4763-01A-01D-1366-10	67932101	69967969	20386784	29	20220											
CDH13	1012	hgsc.bcm.edu	37	16	83378559	83378559	+	Silent	SNP	G	G	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	83378559	G	T	83378559	2	4	330	1	0	0	0	0	0	0	0	1	3101	1045	37	4		4	CDH13	16	83378559	Silent	SNP	G	TCGA-BP-4763-01A-01D-1366-10	13410590	83378559	6976194	30	20221											
MYBBP1A	10514	hgsc.bcm.edu	37	17	4443760	4443760	+	Missense_Mutation	SNP	G	G	A	rs142989122	byfrequency	TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	4443760	G	A	4443760	3	1	330	1	0	0	0	0	1	0	0	0	10015	1145	40	1	717	1	MYBBP1A	17	4443760	Missense_Mutation	SNP	G	TCGA-BP-4763-01A-01D-1366-10		4443760	76751450	31	20222											
KAT2A	2648	hgsc.bcm.edu;ucsc.edu	37	17	40266241	40266241	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	40266241	A	T	40266241	3	4	330	1	0	0	0	0	1	0	0	0	7988	333	12	5	294	5	KAT2A	17	40266241	Missense_Mutation	SNP	A	TCGA-BP-4763-01A-01D-1366-10	35822481	40266241	40928969	32	20223											
STK11	6794	hgsc.bcm.edu	37	19	1220427	1220427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	1220427	C	T	1220427	3	4	330	1	0	0	0	0	1	0	0	0	15299	710	25	2	534	2	STK11	19	1220427	Missense_Mutation	SNP	C	TCGA-BP-4763-01A-01D-1366-10		1220427	57908556	33	20224											
CCDC123	0	hgsc.bcm.edu;ucsc.edu	37	19	33439254	33439254	+	Silent	SNP	C	C	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	33439254	C	A	33439254	2	1	330	1	0	0	0	0	0	0	0	1	2761	813	29	4		4	CCDC123	19	33439254	Silent	SNP	C	TCGA-BP-4763-01A-01D-1366-10	32218827	33439254	25689729	34	20225											
C20orf117	0	hgsc.bcm.edu	37	20	35431379	35431379	+	Silent	SNP	C	C	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	35431379	C	T	35431379	2	4	330	1	0	0	0	0	0	0	0	1	2085	726	26	2		2	C20orf117	20	35431379	Silent	SNP	C	TCGA-BP-4763-01A-01D-1366-10		35431379	27594141	35	20226											
NRIP1	8204	hgsc.bcm.edu;ucsc.edu	37	21	16338266	16338266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	G	16338266	T	G	16338266	3	3	330	1	0	0	0	0	1	0	0	0	10659	1493	52	5	1232	5	NRIP1	21	16338266	Missense_Mutation	SNP	T	TCGA-BP-4763-01A-01D-1366-10		16338266	31791629	36	20227											
AIRE	326	hgsc.bcm.edu	37	21	45717550	45717550	+	Silent	SNP	T	T	C	rs1133779	bycluster;byfrequency;by1000genomes	TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	C	45717550	T	C	45717550	2	2	330	1	0	0	0	0	0	0	0	1	437	1461	51	3		3	AIRE	21	45717550	Silent	SNP	T	TCGA-BP-4763-01A-01D-1366-10	29379284	45717550	2412345	37	20228											
MYH9	4627	hgsc.bcm.edu;ucsc.edu	37	22	36722685	36722685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	36722685	C	A	36722685	3	1	330	1	0	0	0	0	1	0	0	0	10049	912	32	4	5490	4	MYH9	22	36722685	Missense_Mutation	SNP	C	TCGA-BP-4763-01A-01D-1366-10		36722685	14581881	38	20229											
ARSD	414	hgsc.bcm.edu	37	X	2825370	2825370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	A	2825370	G	A	2825370	3	1	330	1	0	0	0	0	1	0	0	0	989	1116	39	1	61	1	ARSD	23	2825370	Missense_Mutation	SNP	G	TCGA-BP-4763-01A-01D-1366-10		2825370	152445190	39	20230											
ODZ1	0	hgsc.bcm.edu;ucsc.edu	37	X	123654383	123654383	+	Silent	SNP	G	G	T	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	T	123654383	G	T	123654383	2	4	330	1	0	0	0	0	0	0	0	1	10841	1190	42	4		4	ODZ1	23	123654383	Silent	SNP	G	TCGA-BP-4763-01A-01D-1366-10	120829013	123654383	31616177	40	20231											
ZNF449	203523	hgsc.bcm.edu	37	X	134481213	134481213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4763-01A-01D-1366-10	TCGA-BP-4763-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fbd099-4ba8-4ef0-9848-6db8ee40c839	304c1220-19a3-4b13-9604-51635e6674c2	G	134481213	A	G	134481213	3	3	330	1	0	0	0	0	1	0	0	0	17932	130	5	3	172	3	ZNF449	23	134481213	Missense_Mutation	SNP	A	TCGA-BP-4763-01A-01D-1366-10	10826830	134481213	20789347	41	20232											
VHL	7428	hgsc.bcm.edu	37	3	10183865	10183865	+	Missense_Mutation	SNP	T	T	G	rs104893824	bycluster	TCGA-BP-4763-01A-01W-1362-10	TCGA-BP-4763-11A-01W-1363-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	ef75f641-71b8-4f30-bd7b-9a431511a148	fccc7484-7937-42da-8aa1-0a383b7ccfb8	G	10183865	T	G	10183865	3	3	331	1	0	0	0	0	1	0	0	0	17174	1522	53	5	336	5	VHL	3	10183865	Missense_Mutation	SNP	T	TCGA-BP-4763-01A-01W-1362-10		10183865	187838565	1	20233											
IQGAP3	128239	hgsc.bcm.edu;ucsc.edu	37	1	156521811	156521811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	156521811	C	T	156521811	3	4	332	1	0	0	0	0	1	0	0	0	7823	739	26	2	3470	2	IQGAP3	1	156521811	Missense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10		156521811	92728810	1	20234											
SLAMF9	89886	hgsc.bcm.edu;ucsc.edu	37	1	159922170	159922170	+	Silent	SNP	G	G	T	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	159922170	G	T	159922170	2	4	332	1	0	0	0	0	0	0	0	1	14384	1190	42	4		4	SLAMF9	1	159922170	Silent	SNP	G	TCGA-BP-4765-01A-01D-1366-10	3400359	159922170	89328451	2	20235											
VANGL2	57216	hgsc.bcm.edu	37	1	160389236	160389236	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	160389236	C	T	160389236	4	4	332	1	0	0	0	0	0	1	0	0	17132	595	21	2	647	2	VANGL2	1	160389236	Nonsense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10	467066	160389236	88861385	3	20236											
F13B	2165	hgsc.bcm.edu	37	1	197030048	197030048	+	Silent	SNP	A	A	T	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	197030048	A	T	197030048	2	4	332	1	0	0	0	0	0	0	0	1	5343	291	11	5		5	F13B	1	197030048	Silent	SNP	A	TCGA-BP-4765-01A-01D-1366-10	36640812	197030048	52220573	4	20237											
TAS2R1	50834	hgsc.bcm.edu	37	5	9629483	9629483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	9629483	C	A	9629483	3	1	332	1	0	0	0	0	1	0	0	0	15577	507	18	4	241	4	TAS2R1	5	9629483	Missense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10		9629483	171285777	5	20238											
DST	667	hgsc.bcm.edu;ucsc.edu	37	6	56470322	56470322	+	Intron	SNP	C	C	G	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	G	56470322	C	G	56470322	1	3	332	0	1	0	0	0	0	0	0	0	4785	638	22	4		4	DST	6	56470322	Intron	SNP	C	TCGA-BP-4765-01A-01D-1366-10		56470322	114644745	6	20239											
ALDH8A1	64577	hgsc.bcm.edu	37	6	135263586	135263586	+	Missense_Mutation	SNP	C	C	A	rs143707042	alternate_allele	TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	135263586	C	A	135263586	3	1	332	1	0	0	0	0	1	0	0	0	505	623	22	4	1080	4	ALDH8A1	6	135263586	Missense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10	78793264	135263586	35851481	7	20240											
TTC26	79989	hgsc.bcm.edu;ucsc.edu	37	7	138845757	138845757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	138845757	A	T	138845757	3	4	332	1	0	0	0	0	1	0	0	0	16706	179	7	5	811	5	TTC26	7	138845757	Missense_Mutation	SNP	A	TCGA-BP-4765-01A-01D-1366-10		138845757	20292906	8	20241											
TPK1	27010	hgsc.bcm.edu	37	7	144532676	144532676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	144532676	G	A	144532676	3	1	332	1	0	0	0	0	1	0	0	0	16416	1116	39	1	743	1	TPK1	7	144532676	Missense_Mutation	SNP	G	TCGA-BP-4765-01A-01D-1366-10	5686919	144532676	14605987	9	20242											
TNFRSF10A	8797	hgsc.bcm.edu	37	8	23049492	23049492	+	Silent	SNP	G	G	T	rs145547481	alternate_allele	TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	23049492	G	T	23049492	2	4	332	1	0	0	0	0	0	0	0	1	16292	1048	37	4		4	TNFRSF10A	8	23049492	Silent	SNP	G	TCGA-BP-4765-01A-01D-1366-10		23049492	123314530	10	20243											
PLEKHA2	59339	hgsc.bcm.edu;ucsc.edu	37	8	38814852	38814852	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	38814852	T	A	38814852	3	1	332	1	0	0	0	0	1	0	0	0	12063	1464	51	5	819	5	PLEKHA2	8	38814852	Missense_Mutation	SNP	T	TCGA-BP-4765-01A-01D-1366-10	15765360	38814852	107549170	11	20244											
SLCO5A1	81796	hgsc.bcm.edu;ucsc.edu	37	8	70667745	70667745	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	G	70667745	T	G	70667745	3	3	332	1	0	0	0	0	1	0	0	0	14744	1435	50	5	1402	5	SLCO5A1	8	70667745	Missense_Mutation	SNP	T	TCGA-BP-4765-01A-01D-1366-10	31852893	70667745	75696277	12	20245											
RAPGEF1	2889	hgsc.bcm.edu	37	9	134464199	134464199	+	Silent	SNP	C	C	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	134464199	C	A	134464199	2	1	332	1	0	0	0	0	0	0	0	1	13056	610	22	4		4	RAPGEF1	9	134464199	Silent	SNP	C	TCGA-BP-4765-01A-01D-1366-10		134464199	6749232	13	20246											
CDH23	64072	hgsc.bcm.edu	37	10	73450274	73450274	+	Silent	SNP	G	G	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	73450274	G	A	73450274	2	1	332	1	0	0	0	0	0	0	0	1	3110	1020	36	2		2	CDH23	10	73450274	Silent	SNP	G	TCGA-BP-4765-01A-01D-1366-10		73450274	62084473	14	20247											
LTBP3	4054	hgsc.bcm.edu;ucsc.edu	37	11	65310998	65310998	+	Silent	SNP	C	C	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	65310998	C	A	65310998	2	1	332	1	0	0	0	0	0	0	0	1	9082	610	22	4		4	LTBP3	11	65310998	Silent	SNP	C	TCGA-BP-4765-01A-01D-1366-10		65310998	69695518	15	20248											
TMEM132D	121256	hgsc.bcm.edu;ucsc.edu	37	12	129559173	129559173	+	Silent	SNP	G	G	T	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	129559173	G	T	129559173	2	4	332	1	0	0	0	0	0	0	0	1	16059	1277	45	4		4	TMEM132D	12	129559173	Silent	SNP	G	TCGA-BP-4765-01A-01D-1366-10		129559173	4292722	16	20249											
TGFB3	7043	hgsc.bcm.edu;ucsc.edu	37	14	76446970	76446970	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	G	76446970	T	G	76446970	3	3	332	1	0	0	0	0	1	0	0	0	15831	1606	56	5	999	5	TGFB3	14	76446970	Missense_Mutation	SNP	T	TCGA-BP-4765-01A-01D-1366-10		76446970	30902570	17	20250											
MYO9A	4649	hgsc.bcm.edu;ucsc.edu	37	15	72190127	72190127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	72190127	C	T	72190127	3	4	332	1	0	0	0	0	1	0	0	0	10091	478	17	2	3001	2	MYO9A	15	72190127	Missense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10		72190127	30341265	18	20251											
MSLN	10232	hgsc.bcm.edu	37	16	815528	815528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	815528	C	A	815528	3	1	332	1	0	0	0	0	1	0	0	0	9888	637	22	4	736	4	MSLN	16	815528	Missense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10		815528	89539225	19	20252											
TEX101	83639	hgsc.bcm.edu;ucsc.edu	37	19	43922506	43922506	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	43922506	T	A	43922506	3	1	332	1	0	0	0	0	1	0	0	0	15785	1522	53	5	783	5	TEX101	19	43922506	Missense_Mutation	SNP	T	TCGA-BP-4765-01A-01D-1366-10		43922506	15206477	20	20253											
NUCB1	4924	hgsc.bcm.edu;ucsc.edu	37	19	49425593	49425593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	49425593	C	A	49425593	3	1	332	1	0	0	0	0	1	0	0	0	10725	797	28	4	1344	4	NUCB1	19	49425593	Missense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10	5503087	49425593	9703390	21	20254											
PEG3	5178	hgsc.bcm.edu;ucsc.edu	37	19	57327195	57327195	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	G	57327195	C	G	57327195	3	3	332	1	0	0	0	0	1	0	0	0	11727	884	31	4	2155	4	PEG3	19	57327195	Missense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10	7901602	57327195	1801788	22	20255											
TMEM47	83604	hgsc.bcm.edu	37	X	34657472	34657472	+	Missense_Mutation	SNP	C	C	T	rs112608415		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	34657472	C	T	34657472	3	4	332	1	0	0	0	0	1	0	0	0	16183	623	22	2	294	2	TMEM47	23	34657472	Missense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10		34657472	120613088	23	20256											
BCOR	54880	hgsc.bcm.edu	37	X	39932111	39932111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	39932111	T	A	39932111	3	1	332	1	0	0	0	0	1	0	0	0	1386	1551	54	5	2827	5	BCOR	23	39932111	Missense_Mutation	SNP	T	TCGA-BP-4765-01A-01D-1366-10	5274639	39932111	115338449	24	20257											
KDM6A	7403	hgsc.bcm.edu	37	X	44922760	44922760	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	44922760	C	T	44922760	4	4	332	1	0	0	0	0	0	1	0	0	8144	595	21	2	1683	2	KDM6A	23	44922760	Nonsense_Mutation	SNP	C	TCGA-BP-4765-01A-01D-1366-10	4990649	44922760	110347800	25	20258											
AKAP4	8852	hgsc.bcm.edu	37	X	49957702	49957702	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	T	49957702	G	T	49957702	4	4	332	1	0	0	0	0	0	1	0	0	453	1256	44	4	910	4	AKAP4	23	49957702	Nonsense_Mutation	SNP	G	TCGA-BP-4765-01A-01D-1366-10	5034942	49957702	105312858	26	20259											
FOXO4	4303	hgsc.bcm.edu	37	X	70320888	70320888	+	Silent	SNP	C	C	A	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	A	70320888	C	A	70320888	2	1	332	1	0	0	0	0	0	0	0	1	6032	643	23	4		4	FOXO4	23	70320888	Silent	SNP	C	TCGA-BP-4765-01A-01D-1366-10	20363186	70320888	84949672	27	20260											
CYLC1	1538	hgsc.bcm.edu	37	X	83128982	83128982	+	Silent	SNP	A	A	G	novel		TCGA-BP-4765-01A-01D-1366-10	TCGA-BP-4765-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	466e3402-24ee-4819-b4b0-769547541096	ad5cbf0f-6aa3-4f0d-9490-5e8ae7fd96d9	G	83128982	A	G	83128982	2	3	332	1	0	0	0	0	0	0	0	1	4143	11	1	3		3	CYLC1	23	83128982	Silent	SNP	A	TCGA-BP-4765-01A-01D-1366-10	12808094	83128982	72141578	28	20261											
VHL	7428	hgsc.bcm.edu	37	3	10183734	10183734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4765-01A-01W-1362-10	TCGA-BP-4765-11A-01W-1363-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	460dfbb1-09ac-4532-aa75-29523009ce18	024b16d4-763e-42e6-ab9f-fdf43bf87a05	A	10183734	C	A	10183734	4	1	333	1	0	0	0	0	0	1	0	0	17174	893	31	4	205	4	VHL	3	10183734	Nonsense_Mutation	SNP	C	TCGA-BP-4765-01A-01W-1362-10		10183734	187838696	1	20262											
NBPF3	84224	hgsc.bcm.edu	37	1	21806631	21806631	+	Silent	SNP	G	G	T	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	21806631	G	T	21806631	2	4	334	1	0	0	0	0	0	0	0	1	10204	1335	47	4		4	NBPF3	1	21806631	Silent	SNP	G	TCGA-BP-4766-01A-01D-1366-10		21806631	227443990	1	20263			1	39		4	4	3079	N	T_G_C_A	1.389628e-08
NBPF3	84224	hgsc.bcm.edu	37	1	21806710	21806710	+	Missense_Mutation	SNP	T	T	A	rs71512986	alternate_allele	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	21806710	T	A	21806710	3	1	334	1	0	0	0	0	1	0	0	0	10204	1606	56	5	1413	5	NBPF3	1	21806710	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10	79	21806710	227443911	2	20264			1	39		4	4	3079	N	T_G_C_A	1.389628e-08
NBPF3	84224	hgsc.bcm.edu	37	1	21808250	21808250	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	G	21808250	C	G	21808250	3	3	334	1	0	0	0	0	1	0	0	0	10204	913	32	4	1640	4	NBPF3	1	21808250	Missense_Mutation	SNP	C	TCGA-BP-4766-01A-01D-1366-10	1540	21808250	227442371	3	20265			1	39		4	4	3079	N	T_G_C_A	1.389628e-08
NBPF3	84224	hgsc.bcm.edu	37	1	21809709	21809709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	21809709	A	C	21809709	3	2	334	1	0	0	0	0	1	0	0	0	10204	391	14	5	1786	5	NBPF3	1	21809709	Missense_Mutation	SNP	A	TCGA-BP-4766-01A-01D-1366-10	1459	21809709	227440912	4	20266			1	39		4	4	3079	N	T_G_C_A	1.389628e-08
MTF1	4520	hgsc.bcm.edu;ucsc.edu	37	1	38300849	38300849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	38300849	T	C	38300849	3	2	334	1	0	0	0	0	1	0	0	0	9929	1792	62	3	1393	3	MTF1	1	38300849	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10	16491140	38300849	210949772	5	20267											
LRRC7	57554	hgsc.bcm.edu;ucsc.edu	37	1	70555438	70555438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	70555438	G	A	70555438	3	1	334	1	0	0	0	0	1	0	0	0	9027	1203	42	2	4457	2	LRRC7	1	70555438	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10	32254589	70555438	178695183	6	20268											
NBPF14	25832	hgsc.bcm.edu	37	1	148004722	148004722	+	Silent	SNP	C	C	T	rs138813155	byfrequency	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	148004722	C	T	148004722	2	4	334	1	0	0	0	0	0	0	0	1	10201	871	31	1		1	NBPF14	1	148004722	Silent	SNP	C	TCGA-BP-4766-01A-01D-1366-10	77449284	148004722	101245899	7	20269											
USH2A	7399	hgsc.bcm.edu;ucsc.edu	37	1	216373233	216373233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	216373233	T	C	216373233	3	2	334	1	0	0	0	0	1	0	0	0	17048	1406	49	3	12299	3	USH2A	1	216373233	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10	68368511	216373233	32877388	8	20270											
GPR45	11250	hgsc.bcm.edu;ucsc.edu	37	2	105859154	105859154	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	105859154	G	A	105859154	4	1	334	1	0	0	0	0	0	1	0	0	6703	1357	47	2	841	2	GPR45	2	105859154	Nonsense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10		105859154	137340219	9	20271											
RIF1	55183	hgsc.bcm.edu	37	2	152319431	152319431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	152319431	C	A	152319431	3	1	334	1	0	0	0	0	1	0	0	0	13372	827	29	4	3511	4	RIF1	2	152319431	Missense_Mutation	SNP	C	TCGA-BP-4766-01A-01D-1366-10	46460277	152319431	90879942	10	20272											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179405009	179405009	+	Silent	SNP	T	T	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	179405009	T	A	179405009	2	1	334	1	0	0	0	0	0	0	0	1	16747	1538	54	5		5	TTN	2	179405009	Silent	SNP	T	TCGA-BP-4766-01A-01D-1366-10	27085578	179405009	63794364	11	20273											
BARD1	580	hgsc.bcm.edu;ucsc.edu	37	2	215595187	215595187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	G	215595187	T	G	215595187	3	3	334	1	0	0	0	0	1	0	0	0	1312	1609	56	5	392	5	BARD1	2	215595187	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10	36190178	215595187	27604186	12	20274											
ADD1	118	hgsc.bcm.edu	37	4	2900254	2900254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	2900254	T	C	2900254	3	2	334	1	0	0	0	0	1	0	0	0	304	1435	50	3	1006	3	ADD1	4	2900254	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10		2900254	188254022	13	20275											
DCHS2	54798	hgsc.bcm.edu	37	4	155410650	155410650	+	Missense_Mutation	SNP	T	T	C	rs72731014	bycluster;byfrequency;by1000genomes	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	155410650	T	C	155410650	3	2	334	1	0	0	0	0	1	0	0	0	4290	1667	58	3	9226	3	DCHS2	4	155410650	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10	152510396	155410650	35743626	14	20276											
MTRR	4552	hgsc.bcm.edu;ucsc.edu	37	5	7897260	7897260	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	7897260	G	T	7897260	4	4	334	1	0	0	0	0	0	1	0	0	9968	1175	41	4	1987	4	MTRR	5	7897260	Nonsense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10		7897260	173018000	15	20277											
ESM1	11082	hgsc.bcm.edu;ucsc.edu	37	5	54277855	54277855	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	G	54277855	T	G	54277855	3	3	334	1	0	0	0	0	1	0	0	0	5254	1821	63	5	141	5	ESM1	5	54277855	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10	46380595	54277855	126637405	16	20278											
DMGDH	29958	hgsc.bcm.edu;ucsc.edu	37	5	78322310	78322310	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	78322310	A	T	78322310	3	4	334	1	0	0	0	0	1	0	0	0	4583	98	4	5	489	5	DMGDH	5	78322310	Missense_Mutation	SNP	A	TCGA-BP-4766-01A-01D-1366-10	24044455	78322310	102592950	17	20279											
WRNIP1	56897	hgsc.bcm.edu;ucsc.edu	37	6	2768965	2768965	+	Missense_Mutation	SNP	A	A	G	rs77289107	bycluster;byfrequency;by1000genomes	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	G	2768965	A	G	2768965	3	3	334	1	0	0	0	0	1	0	0	0	17415	217	8	3	869	3	WRNIP1	6	2768965	Missense_Mutation	SNP	A	TCGA-BP-4766-01A-01D-1366-10		2768965	168346102	18	20280											
RREB1	6239	hgsc.bcm.edu;ucsc.edu	37	6	7189542	7189542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	7189542	G	T	7189542	3	4	334	1	0	0	0	0	1	0	0	0	13692	1348	47	4	422	4	RREB1	6	7189542	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10	4420577	7189542	163925525	19	20281											
TRPV6	55503	hgsc.bcm.edu	37	7	142583152	142583152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	142583152	T	C	142583152	3	2	334	1	0	0	0	0	1	0	0	0	16612	1725	60	3	2127	3	TRPV6	7	142583152	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10		142583152	16555511	20	20282											
SPATC1	375686	hgsc.bcm.edu	37	8	145086876	145086876	+	Missense_Mutation	SNP	T	T	C	rs60050811	bycluster;by1000genomes	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	145086876	T	C	145086876	3	2	334	1	0	0	0	0	1	0	0	0	15029	1783	62	3	195	3	SPATC1	8	145086876	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10		145086876	1277146	21	20283											
ERMP1	79956	hgsc.bcm.edu;ucsc.edu	37	9	5801303	5801303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	5801303	C	T	5801303	3	4	334	1	0	0	0	0	1	0	0	0	5238	797	28	2	794	2	ERMP1	9	5801303	Missense_Mutation	SNP	C	TCGA-BP-4766-01A-01D-1366-10		5801303	135412128	22	20284											
AQP7	364	hgsc.bcm.edu	37	9	33387073	33387073	+	Silent	SNP	G	G	A	rs73645276	bycluster;byfrequency	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	33387073	G	A	33387073	2	1	334	1	0	0	0	0	0	0	0	1	831	1103	39	1		1	AQP7	9	33387073	Silent	SNP	G	TCGA-BP-4766-01A-01D-1366-10	27585770	33387073	107826358	23	20285											
NPR2	4882	hgsc.bcm.edu	37	9	35794073	35794073	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	35794073	G	C	35794073	3	2	334	1	0	0	0	0	1	0	0	0	10602	991	35	4	852	4	NPR2	9	35794073	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10	2407000	35794073	105419358	24	20286											
C9orf64	84267	hgsc.bcm.edu;ucsc.edu	37	9	86570341	86570341	+	Silent	SNP	C	C	T	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	86570341	C	T	86570341	2	4	334	1	0	0	0	0	0	0	0	1	2491	581	21	2		2	C9orf64	9	86570341	Silent	SNP	C	TCGA-BP-4766-01A-01D-1366-10	50776268	86570341	54643090	25	20287											
PDCL	5082	hgsc.bcm.edu;ucsc.edu	37	9	125582825	125582825	+	Missense_Mutation	SNP	G	G	A	rs147830688	byfrequency	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	125582825	G	A	125582825	3	1	334	1	0	0	0	0	1	0	0	0	11633	1086	38	1	464	1	PDCL	9	125582825	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10	39012484	125582825	15630606	26	20288											
ARHGAP22	58504	hgsc.bcm.edu;ucsc.edu	37	10	49812835	49812835	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	49812835	T	A	49812835	3	1	334	1	0	0	0	0	1	0	0	0	872	1551	54	5	2129	5	ARHGAP22	10	49812835	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10		49812835	85721912	27	20289											
VCL	7414	hgsc.bcm.edu	37	10	75854046	75854046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	75854046	C	A	75854046	3	1	334	1	0	0	0	0	1	0	0	0	17151	594	21	4	1412	4	VCL	10	75854046	Missense_Mutation	SNP	C	TCGA-BP-4766-01A-01D-1366-10	26041211	75854046	59680701	28	20290											
GRK5	2869	hgsc.bcm.edu;ucsc.edu	37	10	121190918	121190918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	121190918	G	A	121190918	3	1	334	1	0	0	0	0	1	0	0	0	6799	1116	39	1	647	1	GRK5	10	121190918	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10	45336872	121190918	14343829	29	20291											
STK32C	282974	hgsc.bcm.edu	37	10	134036270	134036270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	134036270	G	A	134036270	3	1	334	1	0	0	0	0	1	0	0	0	15311	1116	39	1	346	1	STK32C	10	134036270	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10	12845352	134036270	1498477	30	20292											
MTCH2	23788	hgsc.bcm.edu	37	11	47663986	47663986	+	Missense_Mutation	SNP	C	C	T	rs72909898	bycluster	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	47663986	C	T	47663986	3	4	334	1	0	0	0	0	1	0	0	0	9921	739	26	2	931	2	MTCH2	11	47663986	Missense_Mutation	SNP	C	TCGA-BP-4766-01A-01D-1366-10		47663986	87342530	31	20293											
OR10G7	390265	hgsc.bcm.edu	37	11	123909234	123909234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	123909234	T	C	123909234	3	2	334	1	0	0	0	0	1	0	0	0	10909	1667	58	3	464	3	OR10G7	11	123909234	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10	76245248	123909234	11097282	32	20294											
PKNOX2	63876	hgsc.bcm.edu	37	11	125300008	125300008	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	125300008	A	C	125300008	3	2	334	1	0	0	0	0	1	0	0	0	11990	188	7	5	1197	5	PKNOX2	11	125300008	Missense_Mutation	SNP	A	TCGA-BP-4766-01A-01D-1366-10	1390774	125300008	9706508	33	20295											
EEA1	8411	hgsc.bcm.edu	37	12	93192687	93192687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	93192687	T	C	93192687	3	2	334	1	0	0	0	0	1	0	0	0	4923	1841	64	3	1323	3	EEA1	12	93192687	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10		93192687	40659208	34	20296											
PLEKHH1	57475	hgsc.bcm.edu;ucsc.edu	37	14	68045252	68045252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	68045252	G	T	68045252	3	4	334	1	0	0	0	0	1	0	0	0	12083	1333	46	4	2827	4	PLEKHH1	14	68045252	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10		68045252	39304288	35	20297											
ITGA11	22801	hgsc.bcm.edu;ucsc.edu	37	15	68661592	68661592	+	Silent	SNP	A	A	G	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	G	68661592	A	G	68661592	2	3	334	1	0	0	0	0	0	0	0	1	7881	214	8	3		3	ITGA11	15	68661592	Silent	SNP	A	TCGA-BP-4766-01A-01D-1366-10		68661592	33869800	36	20298											
GRIN2A	2903	hgsc.bcm.edu	37	16	9857305	9857305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	9857305	G	A	9857305	3	1	334	1	0	0	0	0	1	0	0	0	6786	1232	43	2	302	2	GRIN2A	16	9857305	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10		9857305	80497448	37	20299											
DBNDD1	79007	hgsc.bcm.edu	37	16	90075259	90075259	+	Silent	SNP	C	C	T	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	90075259	C	T	90075259	2	4	334	1	0	0	0	0	0	0	0	1	4255	639	23	1		1	DBNDD1	16	90075259	Silent	SNP	C	TCGA-BP-4766-01A-01D-1366-10	80217954	90075259	279494	38	20300											
PELP1	27043	hgsc.bcm.edu	37	17	4576620	4576620	+	Silent	SNP	C	C	T	rs55677157	byfrequency;by1000genomes	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	4576620	C	T	4576620	2	4	334	1	0	0	0	0	0	0	0	1	11732	523	19	1		1	PELP1	17	4576620	Silent	SNP	C	TCGA-BP-4766-01A-01D-1366-10		4576620	76618590	39	20301											
MLLT6	4302	hgsc.bcm.edu	37	17	36875827	36875827	+	Missense_Mutation	SNP	T	T	C	rs62620198	bycluster;byfrequency;by1000genomes	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	C	36875827	T	C	36875827	3	2	334	1	0	0	0	0	1	0	0	0	9637	1580	55	3	2050	3	MLLT6	17	36875827	Missense_Mutation	SNP	T	TCGA-BP-4766-01A-01D-1366-10	32299207	36875827	44319383	40	20302											
CNTNAP1	8506	hgsc.bcm.edu	37	17	40839832	40839832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	T	40839832	G	T	40839832	3	4	334	1	0	0	0	0	1	0	0	0	3648	1145	40	4	1169	4	CNTNAP1	17	40839832	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10	3964005	40839832	40355378	41	20303											
ILVBL	10994	hgsc.bcm.edu	37	19	15229993	15229993	+	Silent	SNP	A	A	G	rs1131177	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	G	15229993	A	G	15229993	2	3	334	1	0	0	0	0	0	0	0	1	7722	214	8	3		3	ILVBL	19	15229993	Silent	SNP	A	TCGA-BP-4766-01A-01D-1366-10		15229993	43898990	42	20304											
TRO	7216	hgsc.bcm.edu	37	X	54957276	54957276	+	Silent	SNP	T	T	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	54957276	T	A	54957276	2	1	334	1	0	0	0	0	0	0	0	1	16586	1567	55	5		5	TRO	23	54957276	Silent	SNP	T	TCGA-BP-4766-01A-01D-1366-10		54957276	100313284	43	20305											
CXorf41	0	hgsc.bcm.edu;ucsc.edu	37	X	106462183	106462183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4766-01A-01D-1366-10	TCGA-BP-4766-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	246a22b2-db14-489d-9bd3-3a5e91a5c715	131b822f-4ad9-4645-bab7-665d8fd54a2c	A	106462183	G	A	106462183	3	1	334	1	0	0	0	0	1	0	0	0	4112	1377	48	2	326	2	CXorf41	23	106462183	Missense_Mutation	SNP	G	TCGA-BP-4766-01A-01D-1366-10	51504907	106462183	48808377	44	20306											
NECAP2	55707	hgsc.bcm.edu;ucsc.edu	37	1	16775619	16775619	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	G	16775619	C	G	16775619	3	3	335	1	0	0	0	0	1	0	0	0	10315	479	17	4	430	4	NECAP2	1	16775619	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10		16775619	232475002	1	20307											
COL11A1	1301	hgsc.bcm.edu;ucsc.edu	37	1	103354185	103354185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	103354185	C	T	103354185	3	4	335	1	0	0	0	0	1	0	0	0	3669	869	30	2	888	2	COL11A1	1	103354185	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10	86578566	103354185	145896436	2	20308											
LAX1	54900	hgsc.bcm.edu;ucsc.edu	37	1	203741246	203741246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	C	203741246	T	C	203741246	3	2	335	1	0	0	0	0	1	0	0	0	8655	1551	54	3	420	3	LAX1	1	203741246	Missense_Mutation	SNP	T	TCGA-BP-4768-01A-01D-1366-10	100387061	203741246	45509375	3	20309											
KIDINS220	57498	hgsc.bcm.edu;ucsc.edu	37	2	8891618	8891618	+	Silent	SNP	G	G	C	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	C	8891618	G	C	8891618	2	2	335	1	0	0	0	0	0	0	0	1	8278	1335	47	4		4	KIDINS220	2	8891618	Silent	SNP	G	TCGA-BP-4768-01A-01D-1366-10		8891618	234307755	4	20310											
CCT7	10574	hgsc.bcm.edu	37	2	73471736	73471736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	73471736	C	A	73471736	3	1	335	1	0	0	0	0	1	0	0	0	2961	711	25	4	533	4	CCT7	2	73471736	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10	64580118	73471736	169727637	5	20311											
EPC2	26122	hgsc.bcm.edu;ucsc.edu	37	2	149520266	149520266	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	C	149520266	A	C	149520266	3	2	335	1	0	0	0	0	1	0	0	0	5163	11	1	5	865	5	EPC2	2	149520266	Missense_Mutation	SNP	A	TCGA-BP-4768-01A-01D-1366-10	76048530	149520266	93679107	6	20312											
CHN1	1123	hgsc.bcm.edu;ucsc.edu	37	2	175742775	175742775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	175742775	G	T	175742775	3	4	335	1	0	0	0	0	1	0	0	0	3364	1136	40	4	1069	4	CHN1	2	175742775	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	26222509	175742775	67456598	7	20313											
NFE2L2	4780	hgsc.bcm.edu;ucsc.edu	37	2	178096052	178096052	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	178096052	C	A	178096052	4	1	335	1	0	0	0	0	0	1	0	0	10375	922	32	4	542	4	NFE2L2	2	178096052	Nonsense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10	2353277	178096052	65103321	8	20314											
C2orf66	401027	hgsc.bcm.edu;ucsc.edu	37	2	197674050	197674050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	197674050	G	A	197674050	3	1	335	1	0	0	0	0	1	0	0	0	2187	1319	46	2	299	2	C2orf66	2	197674050	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	19577998	197674050	45525323	9	20315											
PLCD4	84812	hgsc.bcm.edu;ucsc.edu	37	2	219500531	219500531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	219500531	C	A	219500531	3	1	335	1	0	0	0	0	1	0	0	0	12040	827	29	4	1959	4	PLCD4	2	219500531	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10	21826481	219500531	23698842	10	20316											
OGG1	4968	hgsc.bcm.edu	37	3	9798842	9798842	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	9798842	A	T	9798842	3	4	335	1	0	0	0	0	1	0	0	0	10852	159	6	5	1116	5	OGG1	3	9798842	Missense_Mutation	SNP	A	TCGA-BP-4768-01A-01D-1366-10		9798842	188223588	11	20317											
SI	6476	hgsc.bcm.edu	37	3	164777762	164777762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	164777762	A	T	164777762	3	4	335	1	0	0	0	0	1	0	0	0	14310	272	10	5	4565	5	SI	3	164777762	Missense_Mutation	SNP	A	TCGA-BP-4768-01A-01D-1366-10	154978920	164777762	33244668	12	20318											
FNDC3B	64778	hgsc.bcm.edu;ucsc.edu	37	3	172115178	172115178	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	172115178	T	A	172115178	3	1	335	1	0	0	0	0	1	0	0	0	5977	1461	51	5	3626	5	FNDC3B	3	172115178	Missense_Mutation	SNP	T	TCGA-BP-4768-01A-01D-1366-10	7337416	172115178	25907252	13	20319											
TBC1D1	23216	hgsc.bcm.edu;ucsc.edu	37	4	38029477	38029477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	38029477	G	T	38029477	3	4	335	1	0	0	0	0	1	0	0	0	15609	1203	42	4	1301	4	TBC1D1	4	38029477	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10		38029477	153124799	14	20320											
APBB2	323	hgsc.bcm.edu	37	4	40892444	40892444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	40892444	C	A	40892444	3	1	335	1	0	0	0	0	1	0	0	0	761	797	28	4	841	4	APBB2	4	40892444	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10	2862967	40892444	150261832	15	20321											
SLC4A4	8671	hgsc.bcm.edu	37	4	72313420	72313420	+	Silent	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	72313420	C	T	72313420	2	4	335	1	0	0	0	0	0	0	0	1	14669	697	25	2		2	SLC4A4	4	72313420	Silent	SNP	C	TCGA-BP-4768-01A-01D-1366-10	31420976	72313420	118840856	16	20322											
C4orf29	80167	hgsc.bcm.edu;ucsc.edu	37	4	128949871	128949871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	G	128949871	A	G	128949871	3	3	335	1	0	0	0	0	1	0	0	0	2261	14	1	3	975	3	C4orf29	4	128949871	Missense_Mutation	SNP	A	TCGA-BP-4768-01A-01D-1366-10	56636451	128949871	62204405	17	20323											
LRBA	987	hgsc.bcm.edu	37	4	151358010	151358010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	151358010	C	T	151358010	3	4	335	1	0	0	0	0	1	0	0	0	8938	690	24	2	1823	2	LRBA	4	151358010	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10	22408139	151358010	39796266	18	20324											
TERT	7015	hgsc.bcm.edu	37	5	1254527	1254527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	1254527	C	T	1254527	3	4	335	1	0	0	0	0	1	0	0	0	15776	884	31	1	155	1	TERT	5	1254527	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10		1254527	179660733	19	20325											
OXCT1	5019	hgsc.bcm.edu;ucsc.edu	37	5	41807505	41807505	+	Silent	SNP	T	T	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	41807505	T	A	41807505	2	1	335	1	0	0	0	0	0	0	0	1	11336	1567	55	5		5	OXCT1	5	41807505	Silent	SNP	T	TCGA-BP-4768-01A-01D-1366-10	40552978	41807505	139107755	20	20326											
HARS2	23438	hgsc.bcm.edu;ucsc.edu	37	5	140076951	140076951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	140076951	G	A	140076951	3	1	335	1	0	0	0	0	1	0	0	0	6967	1232	43	2	1195	2	HARS2	5	140076951	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	98269446	140076951	40838309	21	20327											
GEMIN5	25929	hgsc.bcm.edu;ucsc.edu	37	5	154278063	154278063	+	Silent	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	154278063	C	T	154278063	2	4	335	1	0	0	0	0	0	0	0	1	6338	796	28	2		2	GEMIN5	5	154278063	Silent	SNP	C	TCGA-BP-4768-01A-01D-1366-10	14201112	154278063	26637197	22	20328											
PPP1R10	5514	hgsc.bcm.edu	37	6	30570687	30570687	+	Silent	SNP	T	T	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	30570687	T	A	30570687	2	1	335	1	0	0	0	0	0	0	0	1	12362	1567	55	5		5	PPP1R10	6	30570687	Silent	SNP	T	TCGA-BP-4768-01A-01D-1366-10		30570687	140544380	23	20329											
TNRC18	84629	hgsc.bcm.edu	37	7	5434094	5434094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	G	5434094	A	G	5434094	3	3	335	1	0	0	0	0	1	0	0	0	16351	188	7	3	8698	3	TNRC18	7	5434094	Missense_Mutation	SNP	A	TCGA-BP-4768-01A-01D-1366-10		5434094	153704569	24	20330											
RFC2	5982	hgsc.bcm.edu	37	7	73661019	73661019	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	73661019	T	A	73661019	3	1	335	1	0	0	0	0	1	0	0	0	13258	1609	56	5	685	5	RFC2	7	73661019	Missense_Mutation	SNP	T	TCGA-BP-4768-01A-01D-1366-10	68226925	73661019	85477644	25	20331											
SOX7	83595	hgsc.bcm.edu	37	8	10583337	10583337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	10583337	C	T	10583337	3	4	335	1	0	0	0	0	1	0	0	0	14969	507	18	2	92	2	SOX7	8	10583337	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10		10583337	135780685	26	20332											
JPH1	56704	hgsc.bcm.edu	37	8	75157095	75157095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	C	75157095	G	C	75157095	3	2	335	1	0	0	0	0	1	0	0	0	7967	1087	38	4	419	4	JPH1	8	75157095	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	64573758	75157095	71206927	27	20333											
PKIA	5569	hgsc.bcm.edu;ucsc.edu	37	8	79510666	79510666	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	C	79510666	G	C	79510666	3	2	335	1	0	0	0	0	1	0	0	0	11980	942	33	4	49	4	PKIA	8	79510666	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	4353571	79510666	66853356	28	20334											
PTCH1	5727	hgsc.bcm.edu	37	9	98242754	98242754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	98242754	C	T	98242754	3	4	335	1	0	0	0	0	1	0	0	0	12740	507	18	2	3552	2	PTCH1	9	98242754	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10		98242754	42970677	29	20335											
RET	5979	hgsc.bcm.edu;ucsc.edu	37	10	43608353	43608353	+	Silent	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	43608353	C	T	43608353	2	4	335	1	0	0	0	0	0	0	0	1	13248	535	19	1		1	RET	10	43608353	Silent	SNP	C	TCGA-BP-4768-01A-01D-1366-10		43608353	91926394	30	20336											
DDX50	79009	hgsc.bcm.edu;ucsc.edu	37	10	70673216	70673216	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	C	70673216	G	C	70673216	3	2	335	1	0	0	0	0	1	0	0	0	4370	1029	36	4	849	4	DDX50	10	70673216	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	27064863	70673216	64861531	31	20337											
SORCS1	114815	hgsc.bcm.edu;ucsc.edu	37	10	108447986	108447986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	108447986	G	T	108447986	3	4	335	1	0	0	0	0	1	0	0	0	14943	1368	48	4	2284	4	SORCS1	10	108447986	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	37774770	108447986	27086761	32	20338											
XPNPEP1	7511	hgsc.bcm.edu;ucsc.edu	37	10	111643872	111643874	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	-	111643874	GTG	-	111643872	7	5	335	1	0	1	0	1	0	0	0	0	17454	1368	48	0	1269	0	XPNPEP1	10	111643872	In_Frame_Del	DEL	GTG	TCGA-BP-4768-01A-01D-1366-10	3195886	111643872	23890875	33	20339											
PDZD8	118987	hgsc.bcm.edu;ucsc.edu	37	10	119043260	119043260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	C	119043260	T	C	119043260	3	2	335	1	0	0	0	0	1	0	0	0	11712	1725	60	3	484	3	PDZD8	10	119043260	Missense_Mutation	SNP	T	TCGA-BP-4768-01A-01D-1366-10	7399388	119043260	16491487	34	20340											
PTPN5	84867	hgsc.bcm.edu	37	11	18787397	18787397	+	Silent	SNP	G	G	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	18787397	G	T	18787397	2	4	335	1	0	0	0	0	0	0	0	1	12804	1103	39	4		4	PTPN5	11	18787397	Silent	SNP	G	TCGA-BP-4768-01A-01D-1366-10		18787397	116219119	35	20341											
NUP160	23279	hgsc.bcm.edu;ucsc.edu	37	11	47857324	47857324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	C	47857324	T	C	47857324	3	2	335	1	0	0	0	0	1	0	0	0	10764	1406	49	3	3450	3	NUP160	11	47857324	Missense_Mutation	SNP	T	TCGA-BP-4768-01A-01D-1366-10	29069927	47857324	87149192	36	20342											
CDCA5	113130	hgsc.bcm.edu	37	11	64846929	64846929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	64846929	G	A	64846929	3	1	335	1	0	0	0	0	1	0	0	0	3091	1232	43	2	192	2	CDCA5	11	64846929	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	16989605	64846929	70159587	37	20343											
PAAF1	80227	hgsc.bcm.edu;ucsc.edu	37	11	73620605	73620605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	73620605	T	A	73620605	3	1	335	1	0	0	0	0	1	0	0	0	11369	1551	54	5	720	5	PAAF1	11	73620605	Missense_Mutation	SNP	T	TCGA-BP-4768-01A-01D-1366-10	8773676	73620605	61385911	38	20344											
MMP27	64066	hgsc.bcm.edu;ucsc.edu	37	11	102564646	102564646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	102564646	C	A	102564646	3	1	335	1	0	0	0	0	1	0	0	0	9671	595	21	4	369	4	MMP27	11	102564646	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10	28944041	102564646	32441870	39	20345											
DDX23	9416	hgsc.bcm.edu;ucsc.edu	37	12	49233687	49233687	+	Silent	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	49233687	C	T	49233687	2	4	335	1	0	0	0	0	0	0	0	1	4352	796	28	2		2	DDX23	12	49233687	Silent	SNP	C	TCGA-BP-4768-01A-01D-1366-10		49233687	84618208	40	20346											
KRT86	3892	hgsc.bcm.edu;ucsc.edu	37	12	52695702	52695703	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	G	52695703	-	G	52695702	7	5	335	1	0	1	1	0	0	0	0	0	8507	1464	51	0	4	0	KRT86	12	52695702	Frame_Shift_Ins	INS	-	TCGA-BP-4768-01A-01D-1366-10	3462015	52695702	81156193	41	20347											
ANKRD52	283373	hgsc.bcm.edu	37	12	56646070	56646070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	56646070	C	T	56646070	3	4	335	1	0	0	0	0	1	0	0	0	678	507	18	2	1890	2	ANKRD52	12	56646070	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10	3950368	56646070	77205825	42	20348											
TGM1	7051	hgsc.bcm.edu;ucsc.edu	37	14	24727575	24727575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	24727575	C	T	24727575	3	4	335	1	0	0	0	0	1	0	0	0	15841	884	31	1	1163	1	TGM1	14	24727575	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10		24727575	82621965	43	20349											
CPSF2	53981	hgsc.bcm.edu;ucsc.edu	37	14	92624218	92624218	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	92624218	A	T	92624218	3	4	335	1	0	0	0	0	1	0	0	0	3827	159	6	5	1853	5	CPSF2	14	92624218	Missense_Mutation	SNP	A	TCGA-BP-4768-01A-01D-1366-10	67896643	92624218	14725322	44	20350											
WDR76	79968	hgsc.bcm.edu;ucsc.edu	37	15	44136119	44136119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	44136119	G	T	44136119	3	4	335	1	0	0	0	0	1	0	0	0	17338	1203	42	4	929	4	WDR76	15	44136119	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10		44136119	58395273	45	20351											
ATP8B4	79895	hgsc.bcm.edu;ucsc.edu	37	15	50154547	50154547	+	Silent	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	50154547	C	T	50154547	2	4	335	1	0	0	0	0	0	0	0	1	1197	912	32	2		2	ATP8B4	15	50154547	Silent	SNP	C	TCGA-BP-4768-01A-01D-1366-10	6018428	50154547	52376845	46	20352											
ZNF598	90850	hgsc.bcm.edu	37	16	2052325	2052325	+	Silent	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	2052325	C	T	2052325	2	4	335	1	0	0	0	0	0	0	0	1	18040	912	32	2		2	ZNF598	16	2052325	Silent	SNP	C	TCGA-BP-4768-01A-01D-1366-10		2052325	88302428	47	20353											
KDM6B	23135	hgsc.bcm.edu	37	17	7755027	7755027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	7755027	G	T	7755027	3	4	335	1	0	0	0	0	1	0	0	0	8145	1232	43	4	4132	4	KDM6B	17	7755027	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10		7755027	73440183	48	20354											
MC2R	4158	hgsc.bcm.edu;ucsc.edu	37	18	13885200	13885200	+	Silent	SNP	G	G	T	rs147706299	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	13885200	G	T	13885200	2	4	335	1	0	0	0	0	0	0	0	1	9371	1048	37	4		4	MC2R	18	13885200	Silent	SNP	G	TCGA-BP-4768-01A-01D-1366-10		13885200	64192048	49	20355											
SMAD4	4089	hgsc.bcm.edu	37	18	48604770	48604770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	48604770	G	A	48604770	3	1	335	1	0	0	0	0	1	0	0	0	14773	1116	39	1	1634	1	SMAD4	18	48604770	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	34719570	48604770	29472478	50	20356											
ZNF407	55628	hgsc.bcm.edu;ucsc.edu	37	18	72345311	72345311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	72345311	G	T	72345311	3	4	335	1	0	0	0	0	1	0	0	0	17899	1377	48	4	2338	4	ZNF407	18	72345311	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	23740541	72345311	5731937	51	20357											
APBA3	9546	hgsc.bcm.edu	37	19	3754020	3754020	+	Silent	SNP	G	G	C	rs61731066	bycluster;byfrequency;by1000genomes	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	C	3754020	G	C	3754020	2	2	335	1	0	0	0	0	0	0	0	1	758	1219	43	4		4	APBA3	19	3754020	Silent	SNP	G	TCGA-BP-4768-01A-01D-1366-10		3754020	55374963	52	20358											
CHAF1A	10036	hgsc.bcm.edu	37	19	4428837	4428837	+	Silent	SNP	G	G	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	4428837	G	A	4428837	2	1	335	1	0	0	0	0	0	0	0	1	3313	1277	45	2		2	CHAF1A	19	4428837	Silent	SNP	G	TCGA-BP-4768-01A-01D-1366-10	674817	4428837	54700146	53	20359											
TRIP10	9322	hgsc.bcm.edu;ucsc.edu	37	19	6750048	6750048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	G	6750048	C	G	6750048	3	3	335	1	0	0	0	0	1	0	0	0	16566	527	19	4	1240	4	TRIP10	19	6750048	Missense_Mutation	SNP	C	TCGA-BP-4768-01A-01D-1366-10	2321211	6750048	52378935	54	20360											
NOTCH3	4854	hgsc.bcm.edu	37	19	15300136	15300136	+	Silent	SNP	A	A	G	rs61749020	bycluster;byfrequency;by1000genomes	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	G	15300136	A	G	15300136	2	3	335	1	0	0	0	0	0	0	0	1	10557	291	11	3		3	NOTCH3	19	15300136	Silent	SNP	A	TCGA-BP-4768-01A-01D-1366-10	8550088	15300136	43828847	55	20361											
JAK3	3718	hgsc.bcm.edu	37	19	17945471	17945471	+	Silent	SNP	G	G	A	rs35458530	bycluster;byfrequency;by1000genomes	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	17945471	G	A	17945471	2	1	335	1	0	0	0	0	0	0	0	1	7946	1219	43	2		2	JAK3	19	17945471	Silent	SNP	G	TCGA-BP-4768-01A-01D-1366-10	2645335	17945471	41183512	56	20362											
CDK5RAP1	51654	hgsc.bcm.edu	37	20	31946927	31946927	+	Silent	SNP	G	G	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	31946927	G	T	31946927	2	4	335	1	0	0	0	0	0	0	0	1	3147	1280	45	4		4	CDK5RAP1	20	31946927	Silent	SNP	G	TCGA-BP-4768-01A-01D-1366-10		31946927	31078593	57	20363											
BCAS1	8537	hgsc.bcm.edu;ucsc.edu	37	20	52583461	52583461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	52583461	G	A	52583461	3	1	335	1	0	0	0	0	1	0	0	0	1350	1087	38	1	436	1	BCAS1	20	52583461	Missense_Mutation	SNP	G	TCGA-BP-4768-01A-01D-1366-10	20636534	52583461	10442059	58	20364											
MORC2	22880	hgsc.bcm.edu;ucsc.edu	37	22	31346363	31346363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	A	31346363	T	A	31346363	3	1	335	1	0	0	0	0	1	0	0	0	9709	1623	56	5	2964	5	MORC2	22	31346363	Missense_Mutation	SNP	T	TCGA-BP-4768-01A-01D-1366-10		31346363	19958203	59	20365											
CACNA1I	8911	hgsc.bcm.edu	37	22	39966976	39966976	+	Silent	SNP	C	C	T	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	T	39966976	C	T	39966976	2	4	335	1	0	0	0	0	0	0	0	1	2548	816	29	2		2	CACNA1I	22	39966976	Silent	SNP	C	TCGA-BP-4768-01A-01D-1366-10	8620613	39966976	11337590	60	20366											
ASB11	140456	hgsc.bcm.edu;ucsc.edu	37	X	15320875	15320875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	402c7965-466c-4117-a3c6-3e26aabd0ece	4ebf48fe-dd53-40aa-b19f-a8a21d1b0329	G	15320875	A	G	15320875	3	3	335	1	0	0	0	0	1	0	0	0	1015	188	7	3	759	3	ASB11	23	15320875	Missense_Mutation	SNP	A	TCGA-BP-4768-01A-01D-1366-10		15320875	139949685	61	20367											
FAM131C	348487	broad.mit.edu	37	1	16361919	16361919	+	Silent	SNP	G	A	A	rs148785270	by1000genomes	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	16361919	A	A	16361919	2	1	336	1	0	0	0	0	0	0	0	1	5445	1363	47	2		2	FAM131C	1	16361919	Silent	SNP	G	TCGA-BP-4770-01A-01D-1501-10		16361919	232888702	1	20368											
TNR	7143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	175323627	175323627	+	Silent	SNP	A	A	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	175323627	A	T	175323627	2	4	336	1	0	0	0	0	0	0	0	1	16350	242	9	5		5	TNR	1	175323627	Silent	SNP	A	TCGA-BP-4770-01A-01D-1501-10	158961708	175323627	73926994	2	20369											
OR2T4	127074	broad.mit.edu;hgsc.bcm.edu	37	1	248525734	248525734	+	Silent	SNP	T	T	C	rs138844789		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	248525734	T	C	248525734	2	2	336	1	0	0	0	0	0	0	0	1	11034	1471	51	3		3	OR2T4	1	248525734	Silent	SNP	T	TCGA-BP-4770-01A-01D-1501-10	73202107	248525734	724887	3	20370											
FAM110C	642273	broad.mit.edu	37	2	45667	45667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	45667	T	T	45667	3	4	336	1	0	0	0	0	1	0	0	0	5402	623	22	2	254	2	FAM110C	2	45667	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10		45667	243153706	4	20371											
SRBD1	55133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	45620107	45620107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	45620107	G	T	45620107	3	4	336	1	0	0	0	0	1	0	0	0	15145	1000	35	4	320	4	SRBD1	2	45620107	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	45574440	45620107	197579266	5	20372											
DYSF	8291	broad.mit.edu;ucsc.edu	37	2	71738941	71738941	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	71738941	G	G	71738941	3	3	336	1	0	0	0	0	1	0	0	0	4861	893	31	4	460	4	DYSF	2	71738941	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10	26118834	71738941	171460432	6	20373											
MKI67IP	84365	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	122488643	122488643	+	Silent	SNP	G	G	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	122488643	G	A	122488643	2	1	336	1	0	0	0	0	0	0	0	1	9606	929	33	2		2	MKI67IP	2	122488643	Silent	SNP	G	TCGA-BP-4770-01A-01D-1501-10	50749702	122488643	120710730	7	20374											
SMARCAL1	50485	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	217285020	217285020	+	Splice_Site	SNP	A	A	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	217285020	A	T	217285020	5	4	336	1	0	0	0	0	0	0	1	0	14786	202	7	5	871	5	SMARCAL1	2	217285020	Splice_Site	SNP	A	TCGA-BP-4770-01A-01D-1501-10	94796377	217285020	25914353	8	20375											
VPRBP	9730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	51455599	51455599	+	Silent	SNP	A	A	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	51455599	A	C	51455599	2	2	336	1	0	0	0	0	0	0	0	1	17197	1	1	5		5	VPRBP	3	51455599	Silent	SNP	A	TCGA-BP-4770-01A-01D-1501-10		51455599	146566831	9	20376											
GPR15	2838	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	98251797	98251797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	98251797	G	T	98251797	3	4	336	1	0	0	0	0	1	0	0	0	6662	971	34	4	922	4	GPR15	3	98251797	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	46796198	98251797	99770633	10	20377											
RAB6B	51560	broad.mit.edu;ucsc.edu	37	3	133558406	133558406	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	133558406	G	G	133558406	3	3	336	1	0	0	0	0	1	0	0	0	12965	622	22	4	297	4	RAB6B	3	133558406	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10	35306609	133558406	64464024	11	20378											
MUC4	4585	broad.mit.edu	37	3	195510133	195510133	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	195510133	C	C	195510133	3	2	336	1	0	0	0	0	1	0	0	0	9985	1725	60	3		3	MUC4	3	195510133	Missense_Mutation	SNP	T	TCGA-BP-4770-01A-01D-1501-10	61951727	195510133	2512297	12	20379			1	40		2	2	14	N	T_G	2.687585e-05
MUC4	4585	broad.mit.edu	37	3	195510146	195510146	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	195510146	C	C	195510146	3	2	336	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195510146	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	13	195510146	2512284	13	20380			1	40		2	2	14	N	T_G	2.687585e-05
ZNF141	7700	broad.mit.edu;hgsc.bcm.edu	37	4	367075	367075	+	Silent	SNP	C	C	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	367075	C	T	367075	2	4	336	1	0	0	0	0	0	0	0	1	17742	816	29	2		2	ZNF141	4	367075	Silent	SNP	C	TCGA-BP-4770-01A-01D-1501-10		367075	190787201	14	20381											
CD180	4064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66478939	66478939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	66478939	G	T	66478939	3	4	336	1	0	0	0	0	1	0	0	0	2974	1232	43	4	257	4	CD180	5	66478939	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10		66478939	114436321	15	20382											
PCDHA10	56139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140236094	140236094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	140236094	A	G	140236094	3	3	336	1	0	0	0	0	1	0	0	0	11527	246	9	3	463	3	PCDHA10	5	140236094	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10	73757155	140236094	40679166	16	20383											
PCDHGB7	56099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140798186	140798186	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	140798186	G	C	140798186	3	2	336	1	0	0	0	0	1	0	0	0	11575	942	33	4	762	4	PCDHGB7	5	140798186	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	562092	140798186	40117074	17	20384											
EYS	346007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	65655781	65655781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	65655781	A	C	65655781	3	2	336	1	0	0	0	0	1	0	0	0	5334	98	4	5	7109	5	EYS	6	65655781	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10		65655781	105459286	18	20385											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152809562	152809562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	152809562	A	G	152809562	3	3	336	1	0	0	0	0	1	0	0	0	15457	217	8	3	25990	3	SYNE1	6	152809562	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10	87153781	152809562	18305505	19	20386											
KLHL7	55975	broad.mit.edu;ucsc.edu	37	7	23207478	23207478	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	23207478	A	A	23207478	3	1	336	1	0	0	0	0	1	0	0	0	8401	1291	45	2	1298	2	KLHL7	7	23207478	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10		23207478	135931185	20	20387											
NCF1	653361	broad.mit.edu;hgsc.bcm.edu	37	7	74191683	74191683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	74191683	A	G	74191683	3	3	336	1	0	0	0	0	1	0	0	0	10223	391	14	3	149	3	NCF1	7	74191683	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10	50984205	74191683	84946980	21	20388											
TRRAP	8295	broad.mit.edu	37	7	98574329	98574329	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	98574329	G	G	98574329	3	3	336	1	0	0	0	0	1	0	0	0	16613	1609	56	5	8314	5	TRRAP	7	98574329	Missense_Mutation	SNP	T	TCGA-BP-4770-01A-01D-1501-10	24382646	98574329	60564334	22	20389											
SLC12A9	56996	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100463346	100463346	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	100463346	A	C	100463346	3	2	336	1	0	0	0	0	1	0	0	0	14403	217	8	5	1914	5	SLC12A9	7	100463346	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10	1889017	100463346	58675317	23	20390											
MLL3	58508	broad.mit.edu	37	7	151970836	151970836	+	Silent	SNP	G	A	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	151970836	A	A	151970836	2	1	336	1	0	0	0	0	0	0	0	1	9629	1368	48	2		2	MLL3	7	151970836	Silent	SNP	G	TCGA-BP-4770-01A-01D-1501-10	51507490	151970836	7167827	24	20391											
STAR	6770	broad.mit.edu;hgsc.bcm.edu	37	8	38001871	38001871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	38001871	G	T	38001871	3	4	336	1	0	0	0	0	1	0	0	0	15266	991	35	4	83	4	STAR	8	38001871	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10		38001871	108362151	25	20392											
PLEC	5339	broad.mit.edu;hgsc.bcm.edu	37	8	144992443	144992443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	144992443	G	T	144992443	3	4	336	1	0	0	0	0	1	0	0	0	12059	1116	39	4	2101	4	PLEC	8	144992443	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	106990572	144992443	1371579	26	20393											
DMRT2	10655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	1056689	1056689	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	1056689	C	G	1056689	3	3	336	1	0	0	0	0	1	0	0	0	4588	827	29	4	1169	4	DMRT2	9	1056689	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10		1056689	140156742	27	20394											
FREM1	158326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	14748599	14748599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	14748599	G	T	14748599	3	4	336	1	0	0	0	0	1	0	0	0	6051	1319	46	4	971	4	FREM1	9	14748599	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	13691910	14748599	126464832	28	20395											
TBC1D2	55357	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	100963824	100963824	+	Silent	SNP	C	C	T	rs145936813	byfrequency	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	100963824	C	T	100963824	2	4	336	1	0	0	0	0	0	0	0	1	15620	639	23	1		1	TBC1D2	9	100963824	Silent	SNP	C	TCGA-BP-4770-01A-01D-1501-10	86215225	100963824	40249607	29	20396											
C5	727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123745015	123745015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	123745015	G	A	123745015	3	1	336	1	0	0	0	0	1	0	0	0	2282	942	33	2	1786	2	C5	9	123745015	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	22781191	123745015	17468416	30	20397											
C10orf18	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	5800947	5800947	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	5800947	A	T	5800947	3	4	336	1	0	0	0	0	1	0	0	0	1598	69	3	5	7042	5	C10orf18	10	5800947	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10		5800947	129733800	31	20398											
LRRC56	115399	broad.mit.edu	37	11	551241	551241	+	Silent	SNP	G	C	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	551241	C	C	551241	2	2	336	1	0	0	0	0	0	0	0	1	9019	1277	45	4		4	LRRC56	11	551241	Silent	SNP	G	TCGA-BP-4770-01A-01D-1501-10		551241	134455275	32	20399											
OR2AG1	144125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6806389	6806389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	6806389	A	G	6806389	3	3	336	1	0	0	0	0	1	0	0	0	10991	188	7	3	123	3	OR2AG1	11	6806389	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10	6255148	6806389	128200127	33	20400											
OR4A5	81318	broad.mit.edu;hgsc.bcm.edu	37	11	51412339	51412339	+	Silent	SNP	A	A	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	51412339	A	T	51412339	2	4	336	1	0	0	0	0	0	0	0	1	11050	175	7	5		5	OR4A5	11	51412339	Silent	SNP	A	TCGA-BP-4770-01A-01D-1501-10	44605950	51412339	83594177	34	20401											
OR8H1	219469	broad.mit.edu	37	11	56057618	56057618	+	Silent	SNP	T	C	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	56057618	C	C	56057618	2	2	336	1	0	0	0	0	0	0	0	1	11244	1664	58	3		3	OR8H1	11	56057618	Silent	SNP	T	TCGA-BP-4770-01A-01D-1501-10	4645279	56057618	78948898	35	20402											
OR1S1	219959	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57982325	57982325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	57982325	C	A	57982325	3	1	336	1	0	0	0	0	1	0	0	0	10979	827	29	4	111	4	OR1S1	11	57982325	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10	1924707	57982325	77024191	36	20403											
NAALADL1	10004	broad.mit.edu;hgsc.bcm.edu	37	11	64822097	64822097	+	Silent	SNP	C	C	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	64822097	C	A	64822097	2	1	336	1	0	0	0	0	0	0	0	1	10136	697	25	4		4	NAALADL1	11	64822097	Silent	SNP	C	TCGA-BP-4770-01A-01D-1501-10	6839772	64822097	70184419	37	20404											
OR10G7	390265	broad.mit.edu;hgsc.bcm.edu	37	11	123909632	123909632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	123909632	A	T	123909632	3	4	336	1	0	0	0	0	1	0	0	0	10909	14	1	5	862	5	OR10G7	11	123909632	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10	59087535	123909632	11096884	38	20405											
GRIN2B	2904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	13761600	13761600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	13761600	G	T	13761600	3	4	336	1	0	0	0	0	1	0	0	0	6787	1020	36	4	2527	4	GRIN2B	12	13761600	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10		13761600	120090295	39	20406											
EP400	57634	broad.mit.edu	37	12	132547141	132547141	+	Silent	SNP	G	A	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	132547141	A	A	132547141	2	1	336	1	0	0	0	0	0	0	0	1	5151	962	34	2		2	EP400	12	132547141	Silent	SNP	G	TCGA-BP-4770-01A-01D-1501-10	118785541	132547141	1304754	40	20407											
MTUS2	23281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	30062042	30062042	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	30062042	A	T	30062042	3	4	336	1	0	0	0	0	1	0	0	0	9973	69	3	5	3527	5	MTUS2	13	30062042	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10		30062042	85107836	41	20408											
RB1	5925	broad.mit.edu;hgsc.bcm.edu	37	13	49030485	49030485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	49030485	G	A	49030485	3	1	336	1	0	0	0	0	1	0	0	0	13111	1014	35	2	2034	2	RB1	13	49030485	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	18968443	49030485	66139393	42	20409											
RPGRIP1	57096	broad.mit.edu;ucsc.edu	37	14	21793025	21793025	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	21793025	T	T	21793025	3	4	336	1	0	0	0	0	1	0	0	0	13562	1232	43	4	2065	4	RPGRIP1	14	21793025	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10		21793025	85556515	43	20410											
C14orf37	145407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58563699	58563699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	58563699	T	C	58563699	3	2	336	1	0	0	0	0	1	0	0	0	1773	1565	54	3	508	3	C14orf37	14	58563699	Missense_Mutation	SNP	T	TCGA-BP-4770-01A-01D-1501-10	36770674	58563699	48785841	44	20411											
RGS6	9628	broad.mit.edu	37	14	72976891	72976891	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	72976891	T	T	72976891	3	4	336	1	0	0	0	0	1	0	0	0	13322	942	33	4	1045	4	RGS6	14	72976891	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	14413192	72976891	34372649	45	20412											
SERPINA3	12	broad.mit.edu;hgsc.bcm.edu	37	14	95080851	95080851	+	Missense_Mutation	SNP	C	C	A	rs144060757	alternate_allele	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	95080851	C	A	95080851	3	1	336	1	0	0	0	0	1	0	0	0	14103	623	22	4	75	4	SERPINA3	14	95080851	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10	22103960	95080851	12268689	46	20413											
ULK3	25989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75134629	75134629	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	75134629	C	G	75134629	3	3	336	1	0	0	0	0	1	0	0	0	16989	913	32	4	1243	4	ULK3	15	75134629	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10		75134629	27396763	47	20414											
PDE8A	5151	broad.mit.edu;hgsc.bcm.edu	37	15	85659326	85659326	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	85659326	A	T	85659326	3	4	336	1	0	0	0	0	1	0	0	0	11660	246	9	5	1573	5	PDE8A	15	85659326	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10	10524697	85659326	16872066	48	20415											
TEKT5	146279	broad.mit.edu;ucsc.edu	37	16	10788637	10788637	+	Missense_Mutation	SNP	T	C	C	rs145065368		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	10788637	C	C	10788637	3	2	336	1	0	0	0	0	1	0	0	0	15768	1435	50	3	1391	3	TEKT5	16	10788637	Missense_Mutation	SNP	T	TCGA-BP-4770-01A-01D-1501-10		10788637	79566116	49	20416											
SPEM1	374768	broad.mit.edu;ucsc.edu	37	17	7324820	7324820	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	7324820	T	T	7324820	3	4	336	1	0	0	0	0	1	0	0	0	15049	643	23	1	836	1	SPEM1	17	7324820	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10		7324820	73870390	50	20417											
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7577498	7577498	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	7577498	C	A	7577498	5	1	336	1	0	0	0	0	0	0	1	0	16393	521	18	4	507	4	TP53	17	7577498	Splice_Site	SNP	C	TCGA-BP-4770-01A-01D-1501-10	252678	7577498	73617712	51	20418											
WNK4	65266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40945664	40945664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	40945664	C	T	40945664	3	4	336	1	0	0	0	0	1	0	0	0	17392	875	31	1	2258	1	WNK4	17	40945664	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10	33368166	40945664	40249546	52	20419											
UNC13D	201294	broad.mit.edu	37	17	73830529	73830529	+	Silent	SNP	C	T	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	73830529	T	T	73830529	2	4	336	1	0	0	0	0	0	0	0	1	16999	796	28	2		2	UNC13D	17	73830529	Silent	SNP	C	TCGA-BP-4770-01A-01D-1501-10	32884865	73830529	7364681	53	20420											
SERPINB13	5275	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	61255920	61255920	+	Missense_Mutation	SNP	G	G	A	rs139825462		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	61255920	G	A	61255920	3	1	336	1	0	0	0	0	1	0	0	0	14113	1145	40	1	21	1	SERPINB13	18	61255920	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10		61255920	16821328	54	20421											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9047434	9047434	+	Silent	SNP	A	A	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	9047434	A	G	9047434	2	3	336	1	0	0	0	0	0	0	0	1	9980	214	8	3		3	MUC16	19	9047434	Silent	SNP	A	TCGA-BP-4770-01A-01D-1501-10		9047434	50081549	55	20422											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9074345	9074345	+	Silent	SNP	T	T	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	9074345	T	C	9074345	2	2	336	1	0	0	0	0	0	0	0	1	9980	1567	55	3		3	MUC16	19	9074345	Silent	SNP	T	TCGA-BP-4770-01A-01D-1501-10	26911	9074345	50054638	56	20423											
CYP4F2	8529	broad.mit.edu;hgsc.bcm.edu	37	19	15989682	15989682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	15989682	G	A	15989682	3	1	336	1	0	0	0	0	1	0	0	0	4190	1087	38	1	104	1	CYP4F2	19	15989682	Missense_Mutation	SNP	G	TCGA-BP-4770-01A-01D-1501-10	6915337	15989682	43139301	57	20424											
UNC13A	23025	broad.mit.edu	37	19	17799246	17799247	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	17799247	G	G	17799246	7	5	336	1	0	1	1	0	0	0	0	0	16996	1595	55	0		0	UNC13A	19	17799246	Frame_Shift_Ins	INS	-	TCGA-BP-4770-01A-01D-1501-10	1809564	17799246	41329737	58	20425											
ZNF99	7652	broad.mit.edu;hgsc.bcm.edu	37	19	22940439	22940439	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	G	22940439	C	G	22940439	3	3	336	1	0	0	0	0	1	0	0	0	18216	922	32	4	1125	4	ZNF99	19	22940439	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10	5141193	22940439	36188544	59	20426											
IL28B	0	broad.mit.edu;hgsc.bcm.edu	37	19	39735134	39735134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	39735134	C	T	39735134	3	4	336	1	0	0	0	0	1	0	0	0	7690	869	30	2	424	2	IL28B	19	39735134	Missense_Mutation	SNP	C	TCGA-BP-4770-01A-01D-1501-10	16794695	39735134	19393849	60	20427											
ALDH16A1	126133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49972161	49972161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	49972161	T	A	49972161	3	1	336	1	0	0	0	0	1	0	0	0	488	1696	59	5	2227	5	ALDH16A1	19	49972161	Missense_Mutation	SNP	T	TCGA-BP-4770-01A-01D-1501-10	10237027	49972161	9156822	61	20428											
ARFGEF2	10564	broad.mit.edu;ucsc.edu	37	20	47605027	47605027	+	Splice_Site	DEL	G	-	-	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	-	47605027	-	-	47605027	8	5	336	1	0	1	0	1	0	0	1	0	853	1014	35	0	2431	0	ARFGEF2	20	47605027	Splice_Site	DEL	G	TCGA-BP-4770-01A-01D-1501-10		47605027	15420493	62	20429	250	4	2	41		5	2	31	N	T_G_AAATAAAATGACGAAAGAGCAGTAT_A	6.202011e-05
ARFGEF2	10564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47605030	47605030	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	-	47605030	A	-	47605030	7	5	336	1	0	1	0	1	0	0	0	0	853	349	13	0	2434	0	ARFGEF2	20	47605030	Frame_Shift_Del	DEL	A	TCGA-BP-4770-01A-01D-1501-10	3	47605030	15420490	63	20430	250	4	2	41		5	2	31	N	T_G_AAATAAAATGACGAAAGAGCAGTAT_A	6.202011e-05
ARFGEF2	10564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47605033	47605057	+	Frame_Shift_Del	DEL	AAATAAAATGACGAAAGAGCAGTAT	AAATAAAATGACGAAAGAGCAGTAT	-	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	AAATAAAATGACGAAAGAGCAGTAT	AAATAAAATGACGAAAGAGCAGTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	-	47605057	AAATAAAATGACGAAAGAGCAGTAT	-	47605033	7	5	336	1	0	1	0	1	0	0	0	0	853	11	1	0	2437	0	ARFGEF2	20	47605033	Frame_Shift_Del	DEL	AAATAAAATGACGAAAGAGCAGTAT	TCGA-BP-4770-01A-01D-1501-10	3	47605033	15420487	64	20431	250	4	2	41		5	2	31	N	T_G_AAATAAAATGACGAAAGAGCAGTAT_A	6.202011e-05
ARFGEF2	10564	hgsc.bcm.edu	37	20	47605035	47605035	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	T	47605035	A	T	47605035	3	4	336	1	0	0	0	0	1	0	0	0	853	101	4	5	2439	5	ARFGEF2	20	47605035	Missense_Mutation	SNP	A	TCGA-BP-4770-01A-01D-1501-10	2	47605035	15420485	65	20432	250	4	2	41		5	2	31	N	T_G_AAATAAAATGACGAAAGAGCAGTAT_A	6.202011e-05
ARFGEF2	10564	hgsc.bcm.edu	37	20	47605057	47605057	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	A	47605057	T	A	47605057	4	1	336	1	0	0	0	0	0	1	0	0	853	1413	49	5	2461	5	ARFGEF2	20	47605057	Nonsense_Mutation	SNP	T	TCGA-BP-4770-01A-01D-1501-10	22	47605057	15420463	66	20433			2	41		5	2	31	N	T_G_AAATAAAATGACGAAAGAGCAGTAT_A	6.202011e-05
TIMM17B	10245	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48751506	48751506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aecbc5db-f75a-42d0-a84d-aa0369b08eec	acf4697e-e118-46c4-827a-76e2e4ab0124	C	48751506	T	C	48751506	3	2	336	1	0	0	0	0	1	0	0	0	15921	1522	53	3	337	3	TIMM17B	23	48751506	Missense_Mutation	SNP	T	TCGA-BP-4770-01A-01D-1501-10		48751506	106519054	67	20434											
PTGFR	5737	hgsc.bcm.edu	37	1	78958515	78958515	+	Silent	SNP	C	C	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	78958515	C	A	78958515	2	1	337	1	0	0	0	0	0	0	0	1	12760	639	23	4		4	PTGFR	1	78958515	Silent	SNP	C	TCGA-BP-4771-01A-01D-1366-10		78958515	170292106	1	20435											
SETDB1	9869	hgsc.bcm.edu	37	1	150923431	150923431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	150923431	G	A	150923431	3	1	337	1	0	0	0	0	1	0	0	0	14151	1377	48	2	2124	2	SETDB1	1	150923431	Missense_Mutation	SNP	G	TCGA-BP-4771-01A-01D-1366-10	71964916	150923431	98327190	2	20436											
CR2	1380	hgsc.bcm.edu	37	1	207644230	207644230	+	Silent	SNP	G	G	T	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	T	207644230	G	T	207644230	2	4	337	1	0	0	0	0	0	0	0	1	3844	1219	43	4		4	CR2	1	207644230	Silent	SNP	G	TCGA-BP-4771-01A-01D-1366-10	56720799	207644230	41606391	3	20437											
LRP1B	53353	hgsc.bcm.edu	37	2	141665553	141665553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	141665553	G	A	141665553	3	1	337	1	0	0	0	0	1	0	0	0	8962	1348	47	2	10666	2	LRP1B	2	141665553	Missense_Mutation	SNP	G	TCGA-BP-4771-01A-01D-1366-10		141665553	101533820	4	20438											
NMUR1	10316	hgsc.bcm.edu	37	2	232393300	232393300	+	Silent	SNP	G	G	C	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	C	232393300	G	C	232393300	2	2	337	1	0	0	0	0	0	0	0	1	10513	929	33	4		4	NMUR1	2	232393300	Silent	SNP	G	TCGA-BP-4771-01A-01D-1366-10	90727747	232393300	10806073	5	20439											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191558	10191558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	C	10191558	T	C	10191558	3	2	337	1	0	0	0	0	1	0	0	0	17174	1551	54	3	561	3	VHL	3	10191558	Missense_Mutation	SNP	T	TCGA-BP-4771-01A-01D-1366-10		10191558	187830872	6	20440											
CLCN3	1182	hgsc.bcm.edu	37	4	170611793	170611793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	170611793	G	A	170611793	3	1	337	1	0	0	0	0	1	0	0	0	3466	1174	41	2	737	2	CLCN3	4	170611793	Missense_Mutation	SNP	G	TCGA-BP-4771-01A-01D-1366-10		170611793	20542483	7	20441											
FAT2	2196	hgsc.bcm.edu;ucsc.edu	37	5	150897291	150897291	+	Silent	SNP	G	G	T	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	T	150897291	G	T	150897291	2	4	337	1	0	0	0	0	0	0	0	1	5697	1086	38	4		4	FAT2	5	150897291	Silent	SNP	G	TCGA-BP-4771-01A-01D-1366-10		150897291	30017969	8	20442											
C7orf28B	0	hgsc.bcm.edu	37	7	6844681	6844681	+	Missense_Mutation	SNP	C	C	T	rs8058		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	T	6844681	C	T	6844681	3	4	337	1	0	0	0	0	1	0	0	0	2386	478	17	2	470	2	C7orf28B	7	6844681	Missense_Mutation	SNP	C	TCGA-BP-4771-01A-01D-1366-10		6844681	152293982	9	20443											
ADCY1	107	hgsc.bcm.edu	37	7	45697340	45697340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	45697340	C	A	45697340	3	1	337	1	0	0	0	0	1	0	0	0	292	739	26	4	1185	4	ADCY1	7	45697340	Missense_Mutation	SNP	C	TCGA-BP-4771-01A-01D-1366-10	38852659	45697340	113441323	10	20444											
ADAMDEC1	27299	hgsc.bcm.edu;ucsc.edu	37	8	24254839	24254839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	G	24254839	A	G	24254839	3	3	337	1	0	0	0	0	1	0	0	0	254	275	10	3	519	3	ADAMDEC1	8	24254839	Missense_Mutation	SNP	A	TCGA-BP-4771-01A-01D-1366-10		24254839	122109183	11	20445											
TRIB1	10221	hgsc.bcm.edu	37	8	126448323	126448323	+	Silent	SNP	T	T	C	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	C	126448323	T	C	126448323	2	2	337	1	0	0	0	0	0	0	0	1	16494	1461	51	3		3	TRIB1	8	126448323	Silent	SNP	T	TCGA-BP-4771-01A-01D-1366-10	102193484	126448323	19915699	12	20446											
FBXW5	54461	hgsc.bcm.edu	37	9	139837902	139837902	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	139837902	C	A	139837902	4	1	337	1	0	0	0	0	0	1	0	0	5775	864	30	4	1478	4	FBXW5	9	139837902	Nonsense_Mutation	SNP	C	TCGA-BP-4771-01A-01D-1366-10		139837902	1375529	13	20447											
MYO3A	53904	hgsc.bcm.edu	37	10	26385322	26385322	+	Silent	SNP	T	T	C	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	C	26385322	T	C	26385322	2	2	337	1	0	0	0	0	0	0	0	1	10083	1490	52	3		3	MYO3A	10	26385322	Silent	SNP	T	TCGA-BP-4771-01A-01D-1366-10		26385322	109149425	14	20448											
HK1	3098	hgsc.bcm.edu	37	10	71048514	71048514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	71048514	C	A	71048514	4	1	337	1	0	0	0	0	0	1	0	0	7197	747	26	4	17	4	HK1	10	71048514	Nonsense_Mutation	SNP	C	TCGA-BP-4771-01A-01D-1366-10	44663192	71048514	64486233	15	20449											
DNHD1	144132	hgsc.bcm.edu	37	11	6567890	6567890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	T	6567890	G	T	6567890	3	4	337	1	0	0	0	0	1	0	0	0	4670	991	35	4	5804	4	DNHD1	11	6567890	Missense_Mutation	SNP	G	TCGA-BP-4771-01A-01D-1366-10		6567890	128438626	16	20450											
GDF3	9573	hgsc.bcm.edu	37	12	7843115	7843115	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	7843115	C	A	7843115	4	1	337	1	0	0	0	0	0	1	0	0	6322	864	30	4	644	4	GDF3	12	7843115	Nonsense_Mutation	SNP	C	TCGA-BP-4771-01A-01D-1366-10		7843115	126008780	17	20451											
FAM90A1	55138	hgsc.bcm.edu	37	12	8374782	8374783	+	In_Frame_Ins	INS	-	-	CGG	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	CGG	8374783	-	CGG	8374782	7	5	337	1	0	1	1	0	0	0	0	0	5657	1145	40	0	367	0	FAM90A1	12	8374782	In_Frame_Ins	INS	-	TCGA-BP-4771-01A-01D-1366-10	531667	8374782	125477113	18	20452											
ATF1	466	hgsc.bcm.edu;ucsc.edu	37	12	51213502	51213502	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	G	51213502	T	G	51213502	3	3	337	1	0	0	0	0	1	0	0	0	1079	1403	49	5	778	5	ATF1	12	51213502	Missense_Mutation	SNP	T	TCGA-BP-4771-01A-01D-1366-10	42838720	51213502	82638393	19	20453											
HVCN1	84329	hgsc.bcm.edu	37	12	111099084	111099084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	T	111099084	C	T	111099084	3	4	337	1	0	0	0	0	1	0	0	0	7469	739	26	2	650	2	HVCN1	12	111099084	Missense_Mutation	SNP	C	TCGA-BP-4771-01A-01D-1366-10	59885582	111099084	22752811	20	20454											
SGK269	0	hgsc.bcm.edu;ucsc.edu	37	15	77407253	77407253	+	Silent	SNP	G	G	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	77407253	G	A	77407253	2	1	337	1	0	0	0	0	0	0	0	1	14224	962	34	2		2	SGK269	15	77407253	Silent	SNP	G	TCGA-BP-4771-01A-01D-1366-10		77407253	25124139	21	20455											
USP43	124739	hgsc.bcm.edu	37	17	9604523	9604523	+	Silent	SNP	C	C	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	9604523	C	A	9604523	2	1	337	1	0	0	0	0	0	0	0	1	17086	668	24	4		4	USP43	17	9604523	Silent	SNP	C	TCGA-BP-4771-01A-01D-1366-10		9604523	71590687	22	20456											
KRT10	3858	hgsc.bcm.edu;ucsc.edu	37	17	38977371	38977371	+	Splice_Site	SNP	T	T	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	38977371	T	A	38977371	5	1	337	1	0	0	0	0	0	0	1	0	8455	1594	55	5	1156	5	KRT10	17	38977371	Splice_Site	SNP	T	TCGA-BP-4771-01A-01D-1366-10	29372848	38977371	42217839	23	20457											
EVPL	2125	hgsc.bcm.edu	37	17	74023229	74023229	+	Silent	SNP	G	G	A	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	A	74023229	G	A	74023229	2	1	337	1	0	0	0	0	0	0	0	1	5294	958	34	2		2	EVPL	17	74023229	Silent	SNP	G	TCGA-BP-4771-01A-01D-1366-10	35045858	74023229	7171981	24	20458											
FAM59A	0	hgsc.bcm.edu;ucsc.edu	37	18	29868022	29868022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	G	29868022	T	G	29868022	3	3	337	1	0	0	0	0	1	0	0	0	5599	1850	64	5	2101	5	FAM59A	18	29868022	Missense_Mutation	SNP	T	TCGA-BP-4771-01A-01D-1366-10		29868022	48209226	25	20459											
VSTM1	284415	hgsc.bcm.edu	37	19	54561641	54561641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	G	54561641	C	G	54561641	3	3	337	1	0	0	0	0	1	0	0	0	17240	594	21	4	464	4	VSTM1	19	54561641	Missense_Mutation	SNP	C	TCGA-BP-4771-01A-01D-1366-10		54561641	4567342	26	20460											
PTK6	5753	hgsc.bcm.edu;ucsc.edu	37	20	62164915	62164915	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	T	62164915	A	T	62164915	3	4	337	1	0	0	0	0	1	0	0	0	12775	159	6	5	716	5	PTK6	20	62164915	Missense_Mutation	SNP	A	TCGA-BP-4771-01A-01D-1366-10		62164915	860605	27	20461											
SRPX2	27286	hgsc.bcm.edu;ucsc.edu	37	X	99922295	99922295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4771-01A-01D-1366-10	TCGA-BP-4771-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e1c00898-84ed-4fcb-b167-be6464a960e3	319a361d-cb17-4a06-89dc-421b28936aa7	G	99922295	A	G	99922295	3	3	337	1	0	0	0	0	1	0	0	0	15177	43	2	3	1016	3	SRPX2	23	99922295	Missense_Mutation	SNP	A	TCGA-BP-4771-01A-01D-1366-10		99922295	55348265	28	20462											
SPATA21	374955	hgsc.bcm.edu	37	1	16725989	16725989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	16725989	T	C	16725989	3	2	338	1	0	0	0	0	1	0	0	0	15019	1580	55	3	215	3	SPATA21	1	16725989	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10		16725989	232524632	1	20463											
C1orf63	57035	hgsc.bcm.edu	37	1	25569164	25569164	+	Silent	SNP	A	A	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	25569164	A	C	25569164	2	2	338	1	0	0	0	0	0	0	0	1	2055	407	15	5		5	C1orf63	1	25569164	Silent	SNP	A	TCGA-BP-4774-01A-01D-1366-10	8843175	25569164	223681457	2	20464											
ODF2L	57489	hgsc.bcm.edu	37	1	86851139	86851139	+	Splice_Site	SNP	A	A	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	86851139	A	C	86851139	5	2	338	1	0	0	0	0	0	0	1	0	10835	173	6	5	1902	5	ODF2L	1	86851139	Splice_Site	SNP	A	TCGA-BP-4774-01A-01D-1366-10	61281975	86851139	162399482	3	20465											
HFM1	164045	hgsc.bcm.edu	37	1	91726880	91726880	+	Silent	SNP	C	C	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	91726880	C	T	91726880	2	4	338	1	0	0	0	0	0	0	0	1	7090	564	20	2		2	HFM1	1	91726880	Silent	SNP	C	TCGA-BP-4774-01A-01D-1366-10	4875741	91726880	157523741	4	20466											
RCOR3	55758	hgsc.bcm.edu	37	1	211447566	211447566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	211447566	G	A	211447566	3	1	338	1	0	0	0	0	1	0	0	0	13197	1319	46	2	330	2	RCOR3	1	211447566	Missense_Mutation	SNP	G	TCGA-BP-4774-01A-01D-1366-10	119720686	211447566	37803055	5	20467											
CDCA7	83879	hgsc.bcm.edu;ucsc.edu	37	2	174223501	174223501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	174223501	T	C	174223501	3	2	338	1	0	0	0	0	1	0	0	0	3092	1464	51	3	89	3	CDCA7	2	174223501	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10		174223501	68975872	6	20468											
ALS2	57679	hgsc.bcm.edu	37	2	202580492	202580492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	202580492	G	T	202580492	3	4	338	1	0	0	0	0	1	0	0	0	550	1357	47	4	1106	4	ALS2	2	202580492	Missense_Mutation	SNP	G	TCGA-BP-4774-01A-01D-1366-10	28356991	202580492	40618881	7	20469											
ABCB6	10058	hgsc.bcm.edu;ucsc.edu	37	2	220075156	220075156	+	Silent	SNP	C	C	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	220075156	C	T	220075156	2	4	338	1	0	0	0	0	0	0	0	1	45	680	24	2		2	ABCB6	2	220075156	Silent	SNP	C	TCGA-BP-4774-01A-01D-1366-10	17494664	220075156	23124217	8	20470											
DOCK10	55619	hgsc.bcm.edu;ucsc.edu	37	2	225761077	225761077	+	Silent	SNP	A	A	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	225761077	A	G	225761077	2	3	338	1	0	0	0	0	0	0	0	1	4687	40	2	3		3	DOCK10	2	225761077	Silent	SNP	A	TCGA-BP-4774-01A-01D-1366-10	5685921	225761077	17438296	9	20471											
DLEC1	9940	hgsc.bcm.edu;ucsc.edu	37	3	38138227	38138227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	38138227	A	G	38138227	3	3	338	1	0	0	0	0	1	0	0	0	4554	86	3	3	2397	3	DLEC1	3	38138227	Missense_Mutation	SNP	A	TCGA-BP-4774-01A-01D-1366-10		38138227	159884203	10	20472											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47144909	47144909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	47144909	A	G	47144909	3	3	338	1	0	0	0	0	1	0	0	0	14144	449	16	3	2910	3	SETD2	3	47144909	Missense_Mutation	SNP	A	TCGA-BP-4774-01A-01D-1366-10	9006682	47144909	150877521	11	20473											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52651292	52651292	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	52651292	C	A	52651292	4	1	338	1	0	0	0	0	0	1	0	0	11498	835	29	4	3164	4	PBRM1	3	52651292	Nonsense_Mutation	SNP	C	TCGA-BP-4774-01A-01D-1366-10	5506383	52651292	145371138	12	20474											
PROK2	60675	hgsc.bcm.edu	37	3	71830711	71830711	+	Silent	SNP	G	G	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	71830711	G	A	71830711	2	1	338	1	0	0	0	0	0	0	0	1	12561	1306	46	2		2	PROK2	3	71830711	Silent	SNP	G	TCGA-BP-4774-01A-01D-1366-10	19179419	71830711	126191719	13	20475											
CRMP1	1400	hgsc.bcm.edu	37	4	5827342	5827342	+	Silent	SNP	A	A	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	5827342	A	T	5827342	2	4	338	1	0	0	0	0	0	0	0	1	3892	175	7	5		5	CRMP1	4	5827342	Silent	SNP	A	TCGA-BP-4774-01A-01D-1366-10		5827342	185326934	14	20476											
TBC1D1	23216	hgsc.bcm.edu	37	4	38016542	38016542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	38016542	A	G	38016542	3	3	338	1	0	0	0	0	1	0	0	0	15609	159	6	3	836	3	TBC1D1	4	38016542	Missense_Mutation	SNP	A	TCGA-BP-4774-01A-01D-1366-10	32189200	38016542	153137734	15	20477											
KIAA1211	57482	hgsc.bcm.edu	37	4	57182389	57182389	+	Silent	SNP	C	C	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	57182389	C	T	57182389	2	4	338	1	0	0	0	0	0	0	0	1	8222	610	22	2		2	KIAA1211	4	57182389	Silent	SNP	C	TCGA-BP-4774-01A-01D-1366-10	19165847	57182389	133971887	16	20478											
FGB	2244	hgsc.bcm.edu	37	4	155487151	155487151	+	Silent	SNP	G	G	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	155487151	G	T	155487151	2	4	338	1	0	0	0	0	0	0	0	1	5838	1362	47	4		4	FGB	4	155487151	Silent	SNP	G	TCGA-BP-4774-01A-01D-1366-10	98304762	155487151	35667125	17	20479											
TRIML2	205860	hgsc.bcm.edu	37	4	189026066	189026066	+	Silent	SNP	C	C	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	189026066	C	T	189026066	2	4	338	1	0	0	0	0	0	0	0	1	16563	825	29	2		2	TRIML2	4	189026066	Silent	SNP	C	TCGA-BP-4774-01A-01D-1366-10	33538915	189026066	2128210	18	20480											
FEM1C	56929	hgsc.bcm.edu	37	5	114860558	114860558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	114860558	T	C	114860558	3	2	338	1	0	0	0	0	1	0	0	0	5818	1667	58	3	556	3	FEM1C	5	114860558	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10		114860558	66054702	19	20481											
FNIP1	96459	hgsc.bcm.edu;ucsc.edu	37	5	131039810	131039810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	131039810	T	C	131039810	3	2	338	1	0	0	0	0	1	0	0	0	5982	1464	51	3	2472	3	FNIP1	5	131039810	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10	16179252	131039810	49875450	20	20482											
CRISP3	10321	hgsc.bcm.edu;ucsc.edu	37	6	49696473	49696473	+	Silent	SNP	G	G	T	rs488132	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	49696473	G	T	49696473	2	4	338	1	0	0	0	0	0	0	0	1	3883	987	35	4		4	CRISP3	6	49696473	Silent	SNP	G	TCGA-BP-4774-01A-01D-1366-10		49696473	121418594	21	20483											
NPC1L1	29881	hgsc.bcm.edu	37	7	44579311	44579311	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	44579311	C	G	44579311	3	3	338	1	0	0	0	0	1	0	0	0	10578	536	19	4	3470	4	NPC1L1	7	44579311	Missense_Mutation	SNP	C	TCGA-BP-4774-01A-01D-1366-10		44579311	114559352	22	20484											
VPS13B	157680	hgsc.bcm.edu;ucsc.edu	37	8	100479735	100479735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	100479735	G	A	100479735	3	1	338	1	0	0	0	0	1	0	0	0	17202	1261	44	2	3752	2	VPS13B	8	100479735	Missense_Mutation	SNP	G	TCGA-BP-4774-01A-01D-1366-10		100479735	45884287	23	20485											
LRP12	29967	hgsc.bcm.edu;ucsc.edu	37	8	105503566	105503566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	105503566	C	T	105503566	3	4	338	1	0	0	0	0	1	0	0	0	8961	835	29	2	668	2	LRP12	8	105503566	Missense_Mutation	SNP	C	TCGA-BP-4774-01A-01D-1366-10	5023831	105503566	40860456	24	20486											
LAMC3	10319	hgsc.bcm.edu	37	9	133942399	133942399	+	Silent	SNP	C	C	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	133942399	C	T	133942399	2	4	338	1	0	0	0	0	0	0	0	1	8623	900	32	2		2	LAMC3	9	133942399	Silent	SNP	C	TCGA-BP-4774-01A-01D-1366-10		133942399	7271032	25	20487											
KIAA1217	56243	hgsc.bcm.edu	37	10	24832825	24832825	+	Silent	SNP	G	G	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	24832825	G	A	24832825	2	1	338	1	0	0	0	0	0	0	0	1	8223	962	34	2		2	KIAA1217	10	24832825	Silent	SNP	G	TCGA-BP-4774-01A-01D-1366-10		24832825	110701922	26	20488											
ARHGAP1	392	hgsc.bcm.edu	37	11	46717596	46717596	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	46717596	T	A	46717596	3	1	338	1	0	0	0	0	1	0	0	0	861	1725	60	5	1305	5	ARHGAP1	11	46717596	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10		46717596	88288920	27	20489											
OR5T2	219464	hgsc.bcm.edu;ucsc.edu	37	11	56000108	56000108	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	56000108	T	G	56000108	3	3	338	1	0	0	0	0	1	0	0	0	11189	1493	52	5	524	5	OR5T2	11	56000108	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10	9282512	56000108	79006408	28	20490											
AHNAK	79026	hgsc.bcm.edu;ucsc.edu	37	11	62287670	62287670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	62287670	T	G	62287670	3	3	338	1	0	0	0	0	1	0	0	0	414	1435	50	5	3573	5	AHNAK	11	62287670	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10	6287562	62287670	72718846	29	20491											
MLL2	8085	hgsc.bcm.edu	37	12	49433132	49433132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	49433132	T	C	49433132	3	2	338	1	0	0	0	0	1	0	0	0	9628	1580	55	3	8462	3	MLL2	12	49433132	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10		49433132	84418763	30	20492											
MYF6	4618	hgsc.bcm.edu	37	12	81101767	81101767	+	Missense_Mutation	SNP	C	C	A	rs138296448	byfrequency	TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	81101767	C	A	81101767	3	1	338	1	0	0	0	0	1	0	0	0	10035	739	26	4	271	4	MYF6	12	81101767	Missense_Mutation	SNP	C	TCGA-BP-4774-01A-01D-1366-10	31668635	81101767	52750128	31	20493											
PARP4	143	hgsc.bcm.edu	37	13	25016008	25016008	+	Silent	SNP	C	C	T	rs80008060		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	25016008	C	T	25016008	2	4	338	1	0	0	0	0	0	0	0	1	11470	796	28	2		2	PARP4	13	25016008	Silent	SNP	C	TCGA-BP-4774-01A-01D-1366-10		25016008	90153870	32	20494											
DNAJC15	29103	hgsc.bcm.edu;ucsc.edu	37	13	43652746	43652746	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	43652746	A	G	43652746	5	3	338	1	0	0	0	0	0	0	1	0	4636	202	7	3	247	3	DNAJC15	13	43652746	Splice_Site	SNP	A	TCGA-BP-4774-01A-01D-1366-10	18636738	43652746	71517132	33	20495											
SSTR1	6751	hgsc.bcm.edu	37	14	38679408	38679409	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	TG	38679409	-	TG	38679408	7	5	338	1	0	1	1	0	0	0	0	0	15209	101	4	0	816	0	SSTR1	14	38679408	Frame_Shift_Ins	INS	-	TCGA-BP-4774-01A-01D-1366-10		38679408	68670132	34	20496											
SNAPC1	6617	hgsc.bcm.edu;ucsc.edu	37	14	62234060	62234060	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	62234060	T	A	62234060	3	1	338	1	0	0	0	0	1	0	0	0	14847	1464	51	5	429	5	SNAPC1	14	62234060	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10	23554652	62234060	45115480	35	20497											
KCNAB3	9196	hgsc.bcm.edu	37	17	7827771	7827771	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	7827771	A	T	7827771	3	4	338	1	0	0	0	0	1	0	0	0	8018	449	16	5	565	5	KCNAB3	17	7827771	Missense_Mutation	SNP	A	TCGA-BP-4774-01A-01D-1366-10		7827771	73367439	36	20498											
TEX2	55852	hgsc.bcm.edu	37	17	62290991	62290991	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	62290991	G	C	62290991	3	2	338	1	0	0	0	0	1	0	0	0	15793	1059	37	4	2861	4	TEX2	17	62290991	Missense_Mutation	SNP	G	TCGA-BP-4774-01A-01D-1366-10	54463220	62290991	18904219	37	20499											
ZNF554	115196	hgsc.bcm.edu;ucsc.edu	37	19	2833757	2833757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	2833757	A	G	2833757	3	3	338	1	0	0	0	0	1	0	0	0	17997	101	4	3	542	3	ZNF554	19	2833757	Missense_Mutation	SNP	A	TCGA-BP-4774-01A-01D-1366-10		2833757	56295226	38	20500											
FZR1	51343	hgsc.bcm.edu	37	19	3532608	3532608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	3532608	A	G	3532608	3	3	338	1	0	0	0	0	1	0	0	0	6145	130	5	3	1240	3	FZR1	19	3532608	Missense_Mutation	SNP	A	TCGA-BP-4774-01A-01D-1366-10	698851	3532608	55596375	39	20501											
OR10H1	26539	hgsc.bcm.edu	37	19	15918527	15918527	+	Silent	SNP	G	G	A	rs74730938		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	15918527	G	A	15918527	2	1	338	1	0	0	0	0	0	0	0	1	10912	1049	37	1		1	OR10H1	19	15918527	Silent	SNP	G	TCGA-BP-4774-01A-01D-1366-10	12385919	15918527	43210456	40	20502											
TOP3B	8940	hgsc.bcm.edu	37	22	22318352	22318352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	22318352	C	A	22318352	3	1	338	1	0	0	0	0	1	0	0	0	16380	826	29	4	1473	4	TOP3B	22	22318352	Missense_Mutation	SNP	C	TCGA-BP-4774-01A-01D-1366-10		22318352	28986214	41	20503											
ARSA	410	hgsc.bcm.edu	37	22	51065093	51065093	+	Silent	SNP	C	C	G	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	G	51065093	C	G	51065093	2	3	338	1	0	0	0	0	0	0	0	1	987	581	21	4		4	ARSA	22	51065093	Silent	SNP	C	TCGA-BP-4774-01A-01D-1366-10	28746741	51065093	239473	42	20504											
HUWE1	10075	hgsc.bcm.edu	37	X	53622278	53622278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	53622278	C	A	53622278	3	1	338	1	0	0	0	0	1	0	0	0	7468	854	30	4	10095	4	HUWE1	23	53622278	Missense_Mutation	SNP	C	TCGA-BP-4774-01A-01D-1366-10		53622278	101648282	43	20505											
FAAH2	158584	hgsc.bcm.edu;ucsc.edu	37	X	57337126	57337126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	57337126	G	A	57337126	3	1	338	1	0	0	0	0	1	0	0	0	5358	1261	44	2	386	2	FAAH2	23	57337126	Missense_Mutation	SNP	G	TCGA-BP-4774-01A-01D-1366-10	3714848	57337126	97933434	44	20506											
RGAG4	340526	hgsc.bcm.edu	37	X	71349973	71349973	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	71349973	G	C	71349973	3	2	338	1	0	0	0	0	1	0	0	0	13288	1261	44	4	295	4	RGAG4	23	71349973	Missense_Mutation	SNP	G	TCGA-BP-4774-01A-01D-1366-10	14012847	71349973	83920587	45	20507											
NXF2B	728343	hgsc.bcm.edu	37	X	101615546	101615546	+	Silent	SNP	C	C	T	rs13944	bycluster	TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	T	101615546	C	T	101615546	2	4	338	1	0	0	0	0	0	0	0	1	10791	639	23	1		1	NXF2B	23	101615546	Silent	SNP	C	TCGA-BP-4774-01A-01D-1366-10	30265573	101615546	53655014	46	20508											
PAK3	5063	hgsc.bcm.edu	37	X	110406199	110406199	+	Silent	SNP	T	T	C	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	C	110406199	T	C	110406199	2	2	338	1	0	0	0	0	0	0	0	1	11409	1461	51	3		3	PAK3	23	110406199	Silent	SNP	T	TCGA-BP-4774-01A-01D-1366-10	8790653	110406199	44864361	47	20509											
IDH3G	3421	hgsc.bcm.edu	37	X	153055662	153055662	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	153055662	T	A	153055662	3	1	338	1	0	0	0	0	1	0	0	0	7505	1609	56	5	1063	5	IDH3G	23	153055662	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10	42649463	153055662	2214898	48	20510											
PLXNA3	55558	hgsc.bcm.edu	37	X	153699461	153699461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4774-01A-01D-1366-10	TCGA-BP-4774-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4034d194-0264-4594-a86f-a79daf5aca3f	ca015746-b3f1-488e-88e2-e0eed1ac69d6	A	153699461	T	A	153699461	3	1	338	1	0	0	0	0	1	0	0	0	12128	1609	56	5	5288	5	PLXNA3	23	153699461	Missense_Mutation	SNP	T	TCGA-BP-4774-01A-01D-1366-10	643799	153699461	1571099	49	20511											
FGR	2268	hgsc.bcm.edu;ucsc.edu	37	1	27941092	27941092	+	Silent	SNP	T	T	C	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	C	27941092	T	C	27941092	2	2	339	1	0	0	0	0	0	0	0	1	5881	1509	53	3		3	FGR	1	27941092	Silent	SNP	T	TCGA-BP-4775-01A-01D-1366-10		27941092	221309529	1	20512											
FCRL1	115350	hgsc.bcm.edu;ucsc.edu	37	1	157765910	157765910	+	Silent	SNP	C	C	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	157765910	C	T	157765910	2	4	339	1	0	0	0	0	0	0	0	1	5801	581	21	2		2	FCRL1	1	157765910	Silent	SNP	C	TCGA-BP-4775-01A-01D-1366-10	129824818	157765910	91484711	2	20513											
RGL1	23179	hgsc.bcm.edu;ucsc.edu	37	1	183895346	183895346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	183895346	C	T	183895346	3	4	339	1	0	0	0	0	1	0	0	0	13289	768	27	1	2402	1	RGL1	1	183895346	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	26129436	183895346	65355275	3	20514											
EXO1	9156	hgsc.bcm.edu;ucsc.edu	37	1	242030291	242030291	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	242030291	C	T	242030291	4	4	339	1	0	0	0	0	0	1	0	0	5302	528	19	1	1231	1	EXO1	1	242030291	Nonsense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	58134945	242030291	7220330	4	20515											
PLEKHH2	130271	hgsc.bcm.edu;ucsc.edu	37	2	43973017	43973017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	G	43973017	A	G	43973017	3	3	339	1	0	0	0	0	1	0	0	0	12084	449	16	3	3658	3	PLEKHH2	2	43973017	Missense_Mutation	SNP	A	TCGA-BP-4775-01A-01D-1366-10		43973017	199226356	5	20516											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179399891	179399891	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	G	179399891	C	G	179399891	3	3	339	1	0	0	0	0	1	0	0	0	16747	912	32	4	6548	4	TTN	2	179399891	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	135426874	179399891	63799482	6	20517											
GLS	2744	hgsc.bcm.edu;ucsc.edu	37	2	191796274	191796274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	191796274	C	A	191796274	3	1	339	1	0	0	0	0	1	0	0	0	6470	913	32	4	1615	4	GLS	2	191796274	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	12396383	191796274	51403099	7	20518											
TNS1	7145	hgsc.bcm.edu	37	2	218686541	218686541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	G	218686541	A	G	218686541	3	3	339	1	0	0	0	0	1	0	0	0	16355	188	7	3	2069	3	TNS1	2	218686541	Missense_Mutation	SNP	A	TCGA-BP-4775-01A-01D-1366-10	26890267	218686541	24512832	8	20519											
TRANK1	9881	hgsc.bcm.edu;ucsc.edu	37	3	36871105	36871108	+	Frame_Shift_Del	DEL	CTGA	CTGA	-	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	CTGA	CTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	-	36871108	CTGA	-	36871105	7	5	339	1	0	1	0	1	0	0	0	0	16466	681	24	0	158	0	TRANK1	3	36871105	Frame_Shift_Del	DEL	CTGA	TCGA-BP-4775-01A-01D-1366-10		36871105	161151325	9	20520											
BOC	91653	hgsc.bcm.edu	37	3	113002344	113002344	+	Missense_Mutation	SNP	C	C	T	rs147067616		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	113002344	C	T	113002344	3	4	339	1	0	0	0	0	1	0	0	0	1481	739	26	2	2572	2	BOC	3	113002344	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	76131239	113002344	85020086	10	20521											
ACPL2	92370	hgsc.bcm.edu;ucsc.edu	37	3	141011927	141011927	+	Silent	SNP	T	T	C	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	C	141011927	T	C	141011927	2	2	339	1	0	0	0	0	0	0	0	1	166	1712	60	3		3	ACPL2	3	141011927	Silent	SNP	T	TCGA-BP-4775-01A-01D-1366-10	28009583	141011927	57010503	11	20522											
BBS7	55212	hgsc.bcm.edu;ucsc.edu	37	4	122776665	122776665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	122776665	C	T	122776665	3	4	339	1	0	0	0	0	1	0	0	0	1341	797	28	2	1628	2	BBS7	4	122776665	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10		122776665	68377611	12	20523											
KIAA1430	57587	hgsc.bcm.edu;ucsc.edu	37	4	186096970	186096970	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	G	186096970	C	G	186096970	3	3	339	1	0	0	0	0	1	0	0	0	8239	680	24	4	320	4	KIAA1430	4	186096970	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	63320305	186096970	5057306	13	20524											
ZNF131	7690	hgsc.bcm.edu;ucsc.edu	37	5	43175076	43175076	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	G	43175076	C	G	43175076	3	3	339	1	0	0	0	0	1	0	0	0	17733	816	29	4	1637	4	ZNF131	5	43175076	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10		43175076	137740184	14	20525											
ITGA1	3672	hgsc.bcm.edu;ucsc.edu	37	5	52206160	52206160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	52206160	G	A	52206160	3	1	339	1	0	0	0	0	1	0	0	0	7879	1145	40	1	1822	1	ITGA1	5	52206160	Missense_Mutation	SNP	G	TCGA-BP-4775-01A-01D-1366-10	9031084	52206160	128709100	15	20526											
SNX24	28966	hgsc.bcm.edu;ucsc.edu	37	5	122335673	122335673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	122335673	C	T	122335673	3	4	339	1	0	0	0	0	1	0	0	0	14908	739	26	2	330	2	SNX24	5	122335673	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	70129513	122335673	58579587	16	20527											
BTN1A1	696	hgsc.bcm.edu;ucsc.edu	37	6	26505216	26505216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	26505216	G	A	26505216	3	1	339	1	0	0	0	0	1	0	0	0	1561	1319	46	2	501	2	BTN1A1	6	26505216	Missense_Mutation	SNP	G	TCGA-BP-4775-01A-01D-1366-10		26505216	144609851	17	20528											
TMEM200A	114801	hgsc.bcm.edu;ucsc.edu	37	6	130762739	130762739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	C	130762739	T	C	130762739	3	2	339	1	0	0	0	0	1	0	0	0	16135	1551	54	3	1174	3	TMEM200A	6	130762739	Missense_Mutation	SNP	T	TCGA-BP-4775-01A-01D-1366-10	104257523	130762739	40352328	18	20529											
FAM200A	221786	hgsc.bcm.edu;ucsc.edu	37	7	99144481	99144481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	G	99144481	A	G	99144481	3	3	339	1	0	0	0	0	1	0	0	0	5540	372	13	3	175	3	FAM200A	7	99144481	Missense_Mutation	SNP	A	TCGA-BP-4775-01A-01D-1366-10		99144481	59994182	19	20530											
CRISPLD1	83690	hgsc.bcm.edu	37	8	75924705	75924705	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	75924705	G	A	75924705	4	1	339	1	0	0	0	0	0	1	0	0	3884	1357	47	2	302	2	CRISPLD1	8	75924705	Nonsense_Mutation	SNP	G	TCGA-BP-4775-01A-01D-1366-10		75924705	70439317	20	20531											
ADCY8	114	hgsc.bcm.edu;ucsc.edu	37	8	131796014	131796014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	131796014	G	T	131796014	3	4	339	1	0	0	0	0	1	0	0	0	300	971	34	4	572	4	ADCY8	8	131796014	Missense_Mutation	SNP	G	TCGA-BP-4775-01A-01D-1366-10	55871309	131796014	14568008	21	20532											
GBA2	57704	hgsc.bcm.edu;ucsc.edu	37	9	35748456	35748456	+	Silent	SNP	A	A	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	35748456	A	T	35748456	2	4	339	1	0	0	0	0	0	0	0	1	6274	291	11	5		5	GBA2	9	35748456	Silent	SNP	A	TCGA-BP-4775-01A-01D-1366-10		35748456	105464975	22	20533											
NANS	54187	hgsc.bcm.edu	37	9	100845161	100845161	+	Missense_Mutation	SNP	C	C	T	rs143794024		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	100845161	C	T	100845161	3	4	339	1	0	0	0	0	1	0	0	0	10162	855	30	2	926	2	NANS	9	100845161	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	65096705	100845161	40368270	23	20534											
HELLS	3070	hgsc.bcm.edu;ucsc.edu	37	10	96354517	96354517	+	Silent	SNP	T	T	G	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	G	96354517	T	G	96354517	2	3	339	1	0	0	0	0	0	0	0	1	7053	1799	63	5		5	HELLS	10	96354517	Silent	SNP	T	TCGA-BP-4775-01A-01D-1366-10		96354517	39180230	24	20535											
NLRP14	338323	hgsc.bcm.edu	37	11	7064163	7064163	+	Silent	SNP	C	C	G	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	G	7064163	C	G	7064163	2	3	339	1	0	0	0	0	0	0	0	1	10483	668	24	4		4	NLRP14	11	7064163	Silent	SNP	C	TCGA-BP-4775-01A-01D-1366-10		7064163	127942353	25	20536											
OR4D10	390197	hgsc.bcm.edu	37	11	59244948	59244948	+	Silent	SNP	G	G	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	59244948	G	A	59244948	2	1	339	1	0	0	0	0	0	0	0	1	11061	1348	47	2		2	OR4D10	11	59244948	Silent	SNP	G	TCGA-BP-4775-01A-01D-1366-10	52180785	59244948	75761568	26	20537											
HSPB2	3316	hgsc.bcm.edu	37	11	111784450	111784450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	111784450	T	A	111784450	3	1	339	1	0	0	0	0	1	0	0	0	7427	1667	58	5	386	5	HSPB2	11	111784450	Missense_Mutation	SNP	T	TCGA-BP-4775-01A-01D-1366-10	52539502	111784450	23222066	27	20538											
FAM55A	0	hgsc.bcm.edu;ucsc.edu	37	11	114401131	114401131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	114401131	T	A	114401131	3	1	339	1	0	0	0	0	1	0	0	0	5591	1406	49	5	1060	5	FAM55A	11	114401131	Missense_Mutation	SNP	T	TCGA-BP-4775-01A-01D-1366-10	2616681	114401131	20605385	28	20539											
NCAPD3	23310	hgsc.bcm.edu;ucsc.edu	37	11	134046230	134046230	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	C	134046230	G	C	134046230	3	2	339	1	0	0	0	0	1	0	0	0	10213	933	33	4	1471	4	NCAPD3	11	134046230	Missense_Mutation	SNP	G	TCGA-BP-4775-01A-01D-1366-10	19645099	134046230	960286	29	20540											
ACCN2	0	hgsc.bcm.edu;ucsc.edu	37	12	50472709	50472709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	50472709	G	T	50472709	3	4	339	1	0	0	0	0	1	0	0	0	129	1174	41	4	1019	4	ACCN2	12	50472709	Missense_Mutation	SNP	G	TCGA-BP-4775-01A-01D-1366-10		50472709	83379186	30	20541											
KRT80	144501	hgsc.bcm.edu	37	12	52565297	52565297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	52565297	C	A	52565297	3	1	339	1	0	0	0	0	1	0	0	0	8501	913	32	4	118	4	KRT80	12	52565297	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	2092588	52565297	81286598	31	20542											
KIAA0748	0	hgsc.bcm.edu;ucsc.edu	37	12	55356980	55356980	+	Silent	SNP	G	G	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	55356980	G	A	55356980	2	1	339	1	0	0	0	0	0	0	0	1	8197	933	33	2		2	KIAA0748	12	55356980	Silent	SNP	G	TCGA-BP-4775-01A-01D-1366-10	2791683	55356980	78494915	32	20543											
DCN	1634	hgsc.bcm.edu;ucsc.edu	37	12	91572254	91572254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	91572254	C	A	91572254	3	1	339	1	0	0	0	0	1	0	0	0	4299	826	29	4	1031	4	DCN	12	91572254	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	36215274	91572254	42279641	33	20544											
EP400	57634	hgsc.bcm.edu	37	12	132471271	132471271	+	Silent	SNP	C	C	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	132471271	C	A	132471271	2	1	339	1	0	0	0	0	0	0	0	1	5151	581	21	4		4	EP400	12	132471271	Silent	SNP	C	TCGA-BP-4775-01A-01D-1366-10	40899017	132471271	1380624	34	20545											
N6AMT2	221143	hgsc.bcm.edu;ucsc.edu	37	13	21306082	21306082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	21306082	C	T	21306082	3	4	339	1	0	0	0	0	1	0	0	0	10122	826	29	2	246	2	N6AMT2	13	21306082	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10		21306082	93863796	35	20546											
NIPA1	123606	hgsc.bcm.edu;ucsc.edu	37	15	23049093	23049095	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	-	23049095	GAT	-	23049093	7	5	339	1	0	1	0	1	0	0	0	0	10429	1048	37	0	267	0	NIPA1	15	23049093	In_Frame_Del	DEL	GAT	TCGA-BP-4775-01A-01D-1366-10		23049093	79482299	36	20547											
TRPM1	4308	hgsc.bcm.edu	37	15	31295002	31295002	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	31295002	C	A	31295002	4	1	339	1	0	0	0	0	0	1	0	0	16597	661	23	4	980	4	TRPM1	15	31295002	Nonsense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	8245909	31295002	71236390	37	20548											
ELL3	80237	hgsc.bcm.edu;ucsc.edu	37	15	44067734	44067734	+	Silent	SNP	C	C	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	44067734	C	T	44067734	2	4	339	1	0	0	0	0	0	0	0	1	5066	564	20	2		2	ELL3	15	44067734	Silent	SNP	C	TCGA-BP-4775-01A-01D-1366-10	12772732	44067734	58463658	38	20549											
STRA6	64220	hgsc.bcm.edu;ucsc.edu	37	15	74483211	74483211	+	Silent	SNP	T	T	C	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	C	74483211	T	C	74483211	2	2	339	1	0	0	0	0	0	0	0	1	15334	1567	55	3		3	STRA6	15	74483211	Silent	SNP	T	TCGA-BP-4775-01A-01D-1366-10	30415477	74483211	28048181	39	20550											
PDE8A	5151	hgsc.bcm.edu;ucsc.edu	37	15	85643406	85643406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	85643406	G	A	85643406	3	1	339	1	0	0	0	0	1	0	0	0	11660	1377	48	2	1055	2	PDE8A	15	85643406	Missense_Mutation	SNP	G	TCGA-BP-4775-01A-01D-1366-10	11160195	85643406	16887986	40	20551											
SEMA4B	10509	hgsc.bcm.edu;ucsc.edu	37	15	90768609	90768609	+	Silent	SNP	C	C	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	90768609	C	T	90768609	2	4	339	1	0	0	0	0	0	0	0	1	14045	912	32	2		2	SEMA4B	15	90768609	Silent	SNP	C	TCGA-BP-4775-01A-01D-1366-10	5125203	90768609	11762783	41	20552											
CTCF	10664	hgsc.bcm.edu;ucsc.edu	37	16	67644949	67644949	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	67644949	C	T	67644949	4	4	339	1	0	0	0	0	0	1	0	0	4002	827	29	2	216	2	CTCF	16	67644949	Nonsense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10		67644949	22709804	42	20553											
PITPNM3	83394	hgsc.bcm.edu	37	17	6381331	6381331	+	Silent	SNP	G	G	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	6381331	G	A	6381331	2	1	339	1	0	0	0	0	0	0	0	1	11959	1335	47	2		2	PITPNM3	17	6381331	Silent	SNP	G	TCGA-BP-4775-01A-01D-1366-10		6381331	74813879	43	20554											
CNTROB	116840	hgsc.bcm.edu;ucsc.edu	37	17	7839782	7839782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	7839782	G	T	7839782	3	4	339	1	0	0	0	0	1	0	0	0	3653	1290	45	4	711	4	CNTROB	17	7839782	Missense_Mutation	SNP	G	TCGA-BP-4775-01A-01D-1366-10	1458451	7839782	73355428	44	20555											
GGNBP2	79893	hgsc.bcm.edu;ucsc.edu	37	17	34945653	34945653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	G	34945653	A	G	34945653	3	3	339	1	0	0	0	0	1	0	0	0	6366	391	14	3	1956	3	GGNBP2	17	34945653	Missense_Mutation	SNP	A	TCGA-BP-4775-01A-01D-1366-10	27105871	34945653	46249557	45	20556											
SLC16A3	9123	hgsc.bcm.edu	37	17	80195666	80195666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	80195666	C	A	80195666	3	1	339	1	0	0	0	0	1	0	0	0	14422	883	31	4	1030	4	SLC16A3	17	80195666	Missense_Mutation	SNP	C	TCGA-BP-4775-01A-01D-1366-10	45250013	80195666	999544	46	20557											
ZNF227	7770	hgsc.bcm.edu	37	19	44739196	44739196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	A	44739196	G	A	44739196	3	1	339	1	0	0	0	0	1	0	0	0	17793	1291	45	2	627	2	ZNF227	19	44739196	Missense_Mutation	SNP	G	TCGA-BP-4775-01A-01D-1366-10		44739196	14389787	47	20558											
ATF5	22809	hgsc.bcm.edu	37	19	50435817	50435817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	50435817	A	T	50435817	3	4	339	1	0	0	0	0	1	0	0	0	1083	72	3	5	323	5	ATF5	19	50435817	Missense_Mutation	SNP	A	TCGA-BP-4775-01A-01D-1366-10	5696621	50435817	8693166	48	20559											
PCNT	5116	hgsc.bcm.edu;ucsc.edu	37	21	47832897	47832897	+	Silent	SNP	C	C	T	rs144445891		TCGA-BP-4775-01A-01D-1366-10	TCGA-BP-4775-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a3b3efb4-d6c5-4249-b125-1bb2232d2ea9	7548d4f2-9c42-43d0-b807-44695c970ea1	T	47832897	C	T	47832897	2	4	339	1	0	0	0	0	0	0	0	1	11597	535	19	1		1	PCNT	21	47832897	Silent	SNP	C	TCGA-BP-4775-01A-01D-1366-10		47832897	296998	49	20560											
IL6R	3570	hgsc.bcm.edu;ucsc.edu	37	1	154401718	154401718	+	Silent	SNP	T	T	A	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	A	154401718	T	A	154401718	2	1	340	1	0	0	0	0	0	0	0	1	7709	1538	54	5		5	IL6R	1	154401718	Silent	SNP	T	TCGA-BP-4777-01A-01D-1366-10		154401718	94848903	1	20561											
STAT1	6772	hgsc.bcm.edu;ucsc.edu	37	2	191849113	191849113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	C	191849113	G	C	191849113	3	2	340	1	0	0	0	0	1	0	0	0	15276	942	33	4	1026	4	STAT1	2	191849113	Missense_Mutation	SNP	G	TCGA-BP-4777-01A-01D-1366-10		191849113	51350260	2	20562											
COX18	285521	hgsc.bcm.edu;ucsc.edu	37	4	73927583	73927583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	T	73927583	A	T	73927583	3	4	340	1	0	0	0	0	1	0	0	0	3769	72	3	5	234	5	COX18	4	73927583	Missense_Mutation	SNP	A	TCGA-BP-4777-01A-01D-1366-10		73927583	117226693	3	20563											
MAP1B	4131	hgsc.bcm.edu;ucsc.edu	37	5	71493194	71493194	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	T	71493194	C	T	71493194	4	4	340	1	0	0	0	0	0	1	0	0	9235	827	29	2	4030	2	MAP1B	5	71493194	Nonsense_Mutation	SNP	C	TCGA-BP-4777-01A-01D-1366-10		71493194	109422066	4	20564											
SLC27A6	28965	hgsc.bcm.edu;ucsc.edu	37	5	128368807	128368807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	A	128368807	G	A	128368807	3	1	340	1	0	0	0	0	1	0	0	0	14543	1348	47	2	1730	2	SLC27A6	5	128368807	Missense_Mutation	SNP	G	TCGA-BP-4777-01A-01D-1366-10	56875613	128368807	52546453	5	20565											
C6orf27	0	hgsc.bcm.edu;ucsc.edu	37	6	31743892	31743892	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	G	31743892	C	G	31743892	3	3	340	1	0	0	0	0	1	0	0	0	2364	681	24	4	2372	4	C6orf27	6	31743892	Missense_Mutation	SNP	C	TCGA-BP-4777-01A-01D-1366-10		31743892	139371175	6	20566											
PHKG1	5260	hgsc.bcm.edu	37	7	56155438	56155438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	A	56155438	G	A	56155438	3	1	340	1	0	0	0	0	1	0	0	0	11853	1348	47	2	1080	2	PHKG1	7	56155438	Missense_Mutation	SNP	G	TCGA-BP-4777-01A-01D-1366-10		56155438	102983225	7	20567											
PTCH1	5727	hgsc.bcm.edu	37	9	98240434	98240434	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	G	98240434	T	G	98240434	3	3	340	1	0	0	0	0	1	0	0	0	12740	1812	63	5	3153	5	PTCH1	9	98240434	Missense_Mutation	SNP	T	TCGA-BP-4777-01A-01D-1366-10		98240434	42972997	8	20568											
A2BP1	0	hgsc.bcm.edu;ucsc.edu	37	16	7726799	7726799	+	Nonsense_Mutation	SNP	C	C	G	rs182244522	by1000genomes;alternate_allele	TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	G	7726799	C	G	7726799	4	3	340	1	0	0	0	0	0	1	0	0	3	547	19	4	1134	4	A2BP1	16	7726799	Nonsense_Mutation	SNP	C	TCGA-BP-4777-01A-01D-1366-10		7726799	82627954	9	20569											
KIAA1609	57707	hgsc.bcm.edu	37	16	84523001	84523001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	T	84523001	C	T	84523001	3	4	340	1	0	0	0	0	1	0	0	0	8254	507	18	2	978	2	KIAA1609	16	84523001	Missense_Mutation	SNP	C	TCGA-BP-4777-01A-01D-1366-10	76796202	84523001	5831752	10	20570											
AFG3L2	10939	hgsc.bcm.edu;ucsc.edu	37	18	12337401	12337401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	G	12337401	A	G	12337401	3	3	340	1	0	0	0	0	1	0	0	0	360	101	4	3	287	3	AFG3L2	18	12337401	Missense_Mutation	SNP	A	TCGA-BP-4777-01A-01D-1366-10		12337401	65739847	11	20571											
RYR1	6261	hgsc.bcm.edu;ucsc.edu	37	19	39002238	39002238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	A	39002238	G	A	39002238	3	1	340	1	0	0	0	0	1	0	0	0	13781	1029	36	2	9402	2	RYR1	19	39002238	Missense_Mutation	SNP	G	TCGA-BP-4777-01A-01D-1366-10		39002238	20126745	12	20572											
COL4A6	1288	hgsc.bcm.edu;ucsc.edu	37	X	107420105	107420105	+	Silent	SNP	C	C	T	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	T	107420105	C	T	107420105	2	4	340	1	0	0	0	0	0	0	0	1	3697	610	22	2		2	COL4A6	23	107420105	Silent	SNP	C	TCGA-BP-4777-01A-01D-1366-10		107420105	47850455	13	20573											
ATP11C	286410	hgsc.bcm.edu;ucsc.edu	37	X	138840003	138840003	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4777-01A-01D-1366-10	TCGA-BP-4777-11A-01D-1367-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	dccd4d15-8a3a-49f1-b6f9-236ae5262be3	74aadb21-b60b-438f-8eb6-6f163f77d21d	G	138840003	C	G	138840003	3	3	340	1	0	0	0	0	1	0	0	0	1121	564	20	4	820	4	ATP11C	23	138840003	Missense_Mutation	SNP	C	TCGA-BP-4777-01A-01D-1366-10	31419898	138840003	16430557	14	20574											
TUFT1	7286	hgsc.bcm.edu;ucsc.edu	37	1	151512886	151512886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	151512886	C	T	151512886	3	4	341	1	0	0	0	0	1	0	0	0	16784	594	21	2	46	2	TUFT1	1	151512886	Missense_Mutation	SNP	C	TCGA-BP-4781-01A-01D-1373-10		151512886	97737735	1	20575											
F5	2153	hgsc.bcm.edu	37	1	169510701	169510701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	169510701	G	T	169510701	3	4	341	1	0	0	0	0	1	0	0	0	5350	1194	42	4	3099	4	F5	1	169510701	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10	17997815	169510701	79739920	2	20576											
LRP1B	53353	hgsc.bcm.edu	37	2	141259355	141259355	+	Silent	SNP	G	G	A	rs148504930		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	141259355	G	A	141259355	2	1	341	1	0	0	0	0	0	0	0	1	8962	1074	38	1		1	LRP1B	2	141259355	Silent	SNP	G	TCGA-BP-4781-01A-01D-1373-10		141259355	101940018	3	20577											
SLC4A10	57282	hgsc.bcm.edu;ucsc.edu	37	2	162821636	162821636	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	G	162821636	T	G	162821636	3	3	341	1	0	0	0	0	1	0	0	0	14664	1838	64	5	3287	5	SLC4A10	2	162821636	Missense_Mutation	SNP	T	TCGA-BP-4781-01A-01D-1373-10	21562281	162821636	80377737	4	20578											
C2orf77	0	hgsc.bcm.edu;ucsc.edu	37	2	170505754	170505754	+	Nonsense_Mutation	SNP	C	C	A	rs138449065	by1000genomes;alternate_allele	TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	170505754	C	A	170505754	4	1	341	1	0	0	0	0	0	1	0	0	2196	864	30	4	411	4	C2orf77	2	170505754	Nonsense_Mutation	SNP	C	TCGA-BP-4781-01A-01D-1373-10	7684118	170505754	72693619	5	20579											
IL17RC	84818	hgsc.bcm.edu	37	3	9960273	9960273	+	Missense_Mutation	SNP	G	G	C	rs112627391	bycluster;byfrequency;by1000genomes	TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	9960273	G	C	9960273	3	2	341	1	0	0	0	0	1	0	0	0	7648	1377	48	4	676	4	IL17RC	3	9960273	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10		9960273	188062157	6	20580											
KCNH8	131096	hgsc.bcm.edu;ucsc.edu	37	3	19492864	19492864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	19492864	T	A	19492864	3	1	341	1	0	0	0	0	1	0	0	0	8045	1725	60	5	1831	5	KCNH8	3	19492864	Missense_Mutation	SNP	T	TCGA-BP-4781-01A-01D-1373-10	9532591	19492864	178529566	7	20581											
PDS5A	23244	hgsc.bcm.edu;ucsc.edu	37	4	39905679	39905679	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	39905679	G	A	39905679	4	1	341	1	0	0	0	0	0	1	0	0	11698	1299	45	2	2768	2	PDS5A	4	39905679	Nonsense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10		39905679	151248597	8	20582											
TET2	54790	hgsc.bcm.edu	37	4	106155681	106155681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	106155681	C	A	106155681	3	1	341	1	0	0	0	0	1	0	0	0	15782	477	17	4	584	4	TET2	4	106155681	Missense_Mutation	SNP	C	TCGA-BP-4781-01A-01D-1373-10	66250002	106155681	84998595	9	20583											
PLEKHG4B	153478	hgsc.bcm.edu	37	5	145006	145006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	145006	G	C	145006	3	2	341	1	0	0	0	0	1	0	0	0	12079	1319	46	4	822	4	PLEKHG4B	5	145006	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10		145006	180770254	10	20584											
SLC36A3	285641	hgsc.bcm.edu;ucsc.edu	37	5	150666901	150666901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	G	150666901	A	G	150666901	3	3	341	1	0	0	0	0	1	0	0	0	14608	14	1	3	818	3	SLC36A3	5	150666901	Missense_Mutation	SNP	A	TCGA-BP-4781-01A-01D-1373-10	150521895	150666901	30248359	11	20585											
FUCA2	2519	hgsc.bcm.edu;ucsc.edu	37	6	143825091	143825091	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	143825091	G	C	143825091	4	2	341	1	0	0	0	0	0	1	0	0	6102	1024	36	4	712	4	FUCA2	6	143825091	Nonsense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10		143825091	27289976	12	20586											
RNF216	54476	hgsc.bcm.edu;ucsc.edu	37	7	5781389	5781389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	5781389	C	T	5781389	3	4	341	1	0	0	0	0	1	0	0	0	13493	913	32	2	2568	2	RNF216	7	5781389	Missense_Mutation	SNP	C	TCGA-BP-4781-01A-01D-1373-10		5781389	153357274	13	20587											
CALCR	799	hgsc.bcm.edu;ucsc.edu	37	7	93116284	93116284	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	G	93116284	T	G	93116284	3	3	341	1	0	0	0	0	1	0	0	0	2581	1696	59	5	1514	5	CALCR	7	93116284	Missense_Mutation	SNP	T	TCGA-BP-4781-01A-01D-1373-10	87334895	93116284	66022379	14	20588											
CBLL1	79872	hgsc.bcm.edu	37	7	107395874	107395874	+	Silent	SNP	G	G	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	107395874	G	A	107395874	2	1	341	1	0	0	0	0	0	0	0	1	2705	962	34	2		2	CBLL1	7	107395874	Silent	SNP	G	TCGA-BP-4781-01A-01D-1373-10	14279590	107395874	51742789	15	20589											
E2F5	1875	hgsc.bcm.edu;ucsc.edu	37	8	86118418	86118418	+	Silent	SNP	C	C	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	86118418	C	A	86118418	2	1	341	1	0	0	0	0	0	0	0	1	4872	668	24	4		4	E2F5	8	86118418	Silent	SNP	C	TCGA-BP-4781-01A-01D-1373-10		86118418	60245604	16	20590											
TM7SF4	0	hgsc.bcm.edu	37	8	105361354	105361354	+	Missense_Mutation	SNP	G	G	C	rs67114147	bycluster;byfrequency;by1000genomes	TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	105361354	G	C	105361354	3	2	341	1	0	0	0	0	1	0	0	0	15988	1175	41	4	576	4	TM7SF4	8	105361354	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10	19242936	105361354	41002668	17	20591											
ZFAT	57623	hgsc.bcm.edu;ucsc.edu	37	8	135613761	135613761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	135613761	C	T	135613761	3	4	341	1	0	0	0	0	1	0	0	0	17644	652	23	1	1574	1	ZFAT	8	135613761	Missense_Mutation	SNP	C	TCGA-BP-4781-01A-01D-1373-10	30252407	135613761	10750261	18	20592											
XPA	7507	hgsc.bcm.edu;ucsc.edu	37	9	100437766	100437766	+	Silent	SNP	C	C	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	100437766	C	T	100437766	2	4	341	1	0	0	0	0	0	0	0	1	17452	912	32	2		2	XPA	9	100437766	Silent	SNP	C	TCGA-BP-4781-01A-01D-1373-10		100437766	40775665	19	20593											
CAMSAP1	157922	hgsc.bcm.edu;ucsc.edu	37	9	138703339	138703339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	138703339	G	A	138703339	3	1	341	1	0	0	0	0	1	0	0	0	2613	1145	40	1	187	1	CAMSAP1	9	138703339	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10	38265573	138703339	2510092	20	20594											
WAC	51322	hgsc.bcm.edu;ucsc.edu	37	10	28897283	28897283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	G	28897283	T	G	28897283	3	3	341	1	0	0	0	0	1	0	0	0	17259	1609	56	5	1118	5	WAC	10	28897283	Missense_Mutation	SNP	T	TCGA-BP-4781-01A-01D-1373-10		28897283	106637464	21	20595											
EGR2	1959	hgsc.bcm.edu	37	10	64573811	64573811	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	64573811	G	C	64573811	3	2	341	1	0	0	0	0	1	0	0	0	4974	1261	44	4	847	4	EGR2	10	64573811	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10	35676528	64573811	70960936	22	20596											
PYROXD2	84795	hgsc.bcm.edu	37	10	100152266	100152266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	100152266	C	T	100152266	3	4	341	1	0	0	0	0	1	0	0	0	12880	913	32	2	788	2	PYROXD2	10	100152266	Missense_Mutation	SNP	C	TCGA-BP-4781-01A-01D-1373-10	35578455	100152266	35382481	23	20597											
FGF8	2253	hgsc.bcm.edu	37	10	103534502	103534502	+	Silent	SNP	G	G	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	103534502	G	A	103534502	2	1	341	1	0	0	0	0	0	0	0	1	5865	1136	40	1		1	FGF8	10	103534502	Silent	SNP	G	TCGA-BP-4781-01A-01D-1373-10	3382236	103534502	32000245	24	20598											
PLEKHG6	55200	hgsc.bcm.edu	37	12	6436888	6436888	+	Silent	SNP	G	G	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	6436888	G	A	6436888	2	1	341	1	0	0	0	0	0	0	0	1	12081	1219	43	2		2	PLEKHG6	12	6436888	Silent	SNP	G	TCGA-BP-4781-01A-01D-1373-10		6436888	127415007	25	20599											
GRIN2B	2904	hgsc.bcm.edu	37	12	13906649	13906649	+	Silent	SNP	T	T	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	13906649	T	A	13906649	2	1	341	1	0	0	0	0	0	0	0	1	6787	1625	57	5		5	GRIN2B	12	13906649	Silent	SNP	T	TCGA-BP-4781-01A-01D-1373-10	7469761	13906649	119945246	26	20600											
ADAMTS20	80070	hgsc.bcm.edu;ucsc.edu	37	12	43825141	43825141	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	43825141	C	T	43825141	4	4	341	1	0	0	0	0	0	1	0	0	266	624	22	2	2548	2	ADAMTS20	12	43825141	Nonsense_Mutation	SNP	C	TCGA-BP-4781-01A-01D-1373-10	29918492	43825141	90026754	27	20601											
NAA25	80018	hgsc.bcm.edu;ucsc.edu	37	12	112498998	112498998	+	Silent	SNP	A	A	G	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	G	112498998	A	G	112498998	2	3	341	1	0	0	0	0	0	0	0	1	10128	214	8	3		3	NAA25	12	112498998	Silent	SNP	A	TCGA-BP-4781-01A-01D-1373-10	68673857	112498998	21352897	28	20602											
NEK5	341676	hgsc.bcm.edu;ucsc.edu	37	13	52649897	52649897	+	Silent	SNP	T	T	C	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	52649897	T	C	52649897	2	2	341	1	0	0	0	0	0	0	0	1	10334	1606	56	3		3	NEK5	13	52649897	Silent	SNP	T	TCGA-BP-4781-01A-01D-1373-10		52649897	62519981	29	20603											
C14orf101	54916	hgsc.bcm.edu	37	14	57113992	57113992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	G	57113992	A	G	57113992	3	3	341	1	0	0	0	0	1	0	0	0	1736	304	11	3	1963	3	C14orf101	14	57113992	Missense_Mutation	SNP	A	TCGA-BP-4781-01A-01D-1373-10		57113992	50235548	30	20604											
ERCC4	2072	hgsc.bcm.edu;ucsc.edu	37	16	14041533	14041533	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	14041533	G	T	14041533	4	4	341	1	0	0	0	0	0	1	0	0	5217	1291	45	4	2122	4	ERCC4	16	14041533	Nonsense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10		14041533	76313220	31	20605											
SPDYE4	388333	hgsc.bcm.edu	37	17	8660584	8660584	+	Silent	SNP	G	G	C	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	8660584	G	C	8660584	2	2	341	1	0	0	0	0	0	0	0	1	15043	1161	41	4		4	SPDYE4	17	8660584	Silent	SNP	G	TCGA-BP-4781-01A-01D-1373-10		8660584	72534626	32	20606											
CCDC144A	9720	hgsc.bcm.edu	37	17	16638643	16638644	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	16638644	-	T	16638643	7	5	341	1	0	1	1	0	0	0	0	0	2779	101	4	0	3104	0	CCDC144A	17	16638643	Frame_Shift_Ins	INS	-	TCGA-BP-4781-01A-01D-1373-10	7978059	16638643	64556567	33	20607											
PCYT2	5833	hgsc.bcm.edu	37	17	79866843	79866843	+	Silent	SNP	G	G	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	79866843	G	T	79866843	2	4	341	1	0	0	0	0	0	0	0	1	11619	1280	45	4		4	PCYT2	17	79866843	Silent	SNP	G	TCGA-BP-4781-01A-01D-1373-10	63228200	79866843	1328367	34	20608											
STXBP2	6813	hgsc.bcm.edu	37	19	7707347	7707347	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	7707347	A	C	7707347	3	2	341	1	0	0	0	0	1	0	0	0	15365	304	11	5	865	5	STXBP2	19	7707347	Missense_Mutation	SNP	A	TCGA-BP-4781-01A-01D-1373-10		7707347	51421636	35	20609											
NOTCH3	4854	hgsc.bcm.edu;ucsc.edu	37	19	15278141	15278141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	15278141	G	A	15278141	3	1	341	1	0	0	0	0	1	0	0	0	10557	1116	39	1	1704	1	NOTCH3	19	15278141	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10	7570794	15278141	43850842	36	20610											
KRTAP10-3	386682	hgsc.bcm.edu	37	21	45978591	45978591	+	Missense_Mutation	SNP	G	G	A	rs79221051	bycluster;by1000genomes	TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	A	45978591	G	A	45978591	3	1	341	1	0	0	0	0	1	0	0	0	8517	1145	40	1	661	1	KRTAP10-3	21	45978591	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10		45978591	2151304	37	20611											
CRYBB3	1417	hgsc.bcm.edu;ucsc.edu	37	22	25597418	25597418	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	25597418	G	C	25597418	3	2	341	1	0	0	0	0	1	0	0	0	3914	942	33	4	57	4	CRYBB3	22	25597418	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10		25597418	25707148	38	20612											
ARSD	414	hgsc.bcm.edu	37	X	2832696	2832696	+	Silent	SNP	T	T	C	rs113031742	bycluster;by1000genomes	TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	2832696	T	C	2832696	2	2	341	1	0	0	0	0	0	0	0	1	989	1567	55	3		3	ARSD	23	2832696	Silent	SNP	T	TCGA-BP-4781-01A-01D-1373-10		2832696	152437864	39	20613											
MED14	9282	hgsc.bcm.edu	37	X	40526075	40526075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	40526075	A	C	40526075	3	2	341	1	0	0	0	0	1	0	0	0	9439	156	6	5	1234	5	MED14	23	40526075	Missense_Mutation	SNP	A	TCGA-BP-4781-01A-01D-1373-10	37693379	40526075	114744485	40	20614											
SAGE1	55511	hgsc.bcm.edu;ucsc.edu	37	X	134991924	134991924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	T	134991924	G	T	134991924	3	4	341	1	0	0	0	0	1	0	0	0	13822	1029	36	4	1759	4	SAGE1	23	134991924	Missense_Mutation	SNP	G	TCGA-BP-4781-01A-01D-1373-10	94465849	134991924	20278636	41	20615											
SLITRK4	139065	hgsc.bcm.edu	37	X	142718802	142718802	+	Silent	SNP	G	G	C	novel		TCGA-BP-4781-01A-01D-1373-10	TCGA-BP-4781-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9c2726a8-ef24-4653-80c3-247a9c2a0608	ecd9132b-830c-48a8-ba7f-1da213c154b4	C	142718802	G	C	142718802	2	2	341	1	0	0	0	0	0	0	0	1	14758	1277	45	4		4	SLITRK4	23	142718802	Silent	SNP	G	TCGA-BP-4781-01A-01D-1373-10	7726878	142718802	12551758	42	20616											
CELA3A	10136	broad.mit.edu;ucsc.edu	37	1	22336337	22336337	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	22336337	G	G	22336337	3	3	342	1	0	0	0	0	1	0	0	0	3215	275	10	3	808	3	CELA3A	1	22336337	Missense_Mutation	SNP	A	TCGA-BP-4782-01A-02D-1421-08		22336337	226914284	1	20617											
RAD54L	8438	broad.mit.edu;hgsc.bcm.edu	37	1	46743873	46743873	+	Silent	SNP	G	G	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	46743873	G	A	46743873	2	1	342	1	0	0	0	0	0	0	0	1	13006	991	35	2		2	RAD54L	1	46743873	Silent	SNP	G	TCGA-BP-4782-01A-02D-1421-08	24407536	46743873	202506748	2	20618											
TNR	7143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	175360502	175360502	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	175360502	C	G	175360502	3	3	342	1	0	0	0	0	1	0	0	0	16350	594	21	4	2715	4	TNR	1	175360502	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	128616629	175360502	73890119	3	20619											
FMOD	2331	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203316788	203316788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	203316788	G	A	203316788	3	1	342	1	0	0	0	0	1	0	0	0	5966	1203	42	2	527	2	FMOD	1	203316788	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	27956286	203316788	45933833	4	20620											
PRELP	5549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203453269	203453269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	203453269	C	A	203453269	3	1	342	1	0	0	0	0	1	0	0	0	12483	477	17	4	959	4	PRELP	1	203453269	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	136481	203453269	45797352	5	20621											
OPTC	26254	broad.mit.edu;hgsc.bcm.edu	37	1	203468978	203468978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	203468978	G	C	203468978	3	2	342	1	0	0	0	0	1	0	0	0	10895	1014	35	4	745	4	OPTC	1	203468978	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	15709	203468978	45781643	6	20622											
LYST	1130	broad.mit.edu	37	1	235907322	235907322	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	235907322	C	C	235907322	3	2	342	1	0	0	0	0	1	0	0	0	9135	1841	64	3	3393	3	LYST	1	235907322	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	32438344	235907322	13343299	7	20623											
PKDCC	91461	broad.mit.edu	37	2	42275952	42275952	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	42275952	T	T	42275952	3	4	342	1	0	0	0	0	1	0	0	0	11976	759	27	1	615	1	PKDCC	2	42275952	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08		42275952	200923421	8	20624											
TIA1	7072	broad.mit.edu	37	2	70475612	70475612	+	Translation_Start_Site	SNP	C	T	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	70475612	T	T	70475612	1	4	342	1	0	0	0	0	0	0	0	0	15899	580	20	2		2	TIA1	2	70475612	Translation_Start_Site	SNP	C	TCGA-BP-4782-01A-02D-1421-08	28199660	70475612	172723761	9	20625											
TTN	7273	broad.mit.edu	37	2	179406098	179406098	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	179406098	A	A	179406098	3	1	342	1	0	0	0	0	1	0	0	0	16747	1783	62	5	10325	5	TTN	2	179406098	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	108930486	179406098	63793275	10	20626											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179410271	179410271	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	-	179410271	G	-	179410271	7	5	342	1	0	1	0	1	0	0	0	0	16747	1145	40	0	12489	0	TTN	2	179410271	Frame_Shift_Del	DEL	G	TCGA-BP-4782-01A-02D-1421-08	4173	179410271	63789102	11	20627											
PLCL1	5334	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	198949407	198949407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	198949407	T	G	198949407	3	3	342	1	0	0	0	0	1	0	0	0	12046	1841	64	5	1172	5	PLCL1	2	198949407	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	19539136	198949407	44249966	12	20628											
KIAA1486	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	226447525	226447525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	226447525	C	A	226447525	3	1	342	1	0	0	0	0	1	0	0	0	8244	738	26	4	1402	4	KIAA1486	2	226447525	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	27498118	226447525	16751848	13	20629	251	2									
KIAA1486	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	226447526	226447526	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	226447526	C	G	226447526	3	3	342	1	0	0	0	0	1	0	0	0	8244	681	24	4	1403	4	KIAA1486	2	226447526	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	1	226447526	16751847	14	20630	251	2									
NCL	4691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	232321358	232321358	+	Silent	SNP	T	T	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	232321358	T	C	232321358	2	2	342	1	0	0	0	0	0	0	0	1	10233	1683	59	3		3	NCL	2	232321358	Silent	SNP	T	TCGA-BP-4782-01A-02D-1421-08	5873832	232321358	10878015	15	20631											
ALPP	250	broad.mit.edu	37	2	233246044	233246044	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	233246044	T	T	233246044	3	4	342	1	0	0	0	0	1	0	0	0	548	1116	39	4	1314	4	ALPP	2	233246044	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	924686	233246044	9953329	16	20632											
ALPPL2	251	broad.mit.edu	37	2	233274125	233274125	+	Missense_Mutation	SNP	G	T	T	rs145179673	byfrequency;alternate_allele	TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	233274125	T	T	233274125	3	4	342	1	0	0	0	0	1	0	0	0	549	1116	39	4	1305	4	ALPPL2	2	233274125	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	28081	233274125	9925248	17	20633											
KAT2B	8850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	20153227	20153227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	20153227	A	G	20153227	3	3	342	1	0	0	0	0	1	0	0	0	7989	15	1	3	1013	3	KAT2B	3	20153227	Missense_Mutation	SNP	A	TCGA-BP-4782-01A-02D-1421-08		20153227	177869203	18	20634											
DNAH1	25981	broad.mit.edu;ucsc.edu	37	3	52393986	52393986	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	52393986	C	C	52393986	3	2	342	1	0	0	0	0	1	0	0	0	4599	1029	36	4	4564	4	DNAH1	3	52393986	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	32240759	52393986	145628444	19	20635											
GPR15	2838	broad.mit.edu;ucsc.edu	37	3	98251550	98251550	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	98251550	A	A	98251550	3	1	342	1	0	0	0	0	1	0	0	0	6662	594	21	4	675	4	GPR15	3	98251550	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	45857564	98251550	99770880	20	20636											
PLD1	5337	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	171323102	171323102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	171323102	G	T	171323102	3	4	342	1	0	0	0	0	1	0	0	0	12052	1377	48	4	245	4	PLD1	3	171323102	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	73071552	171323102	26699328	21	20637											
EIF4A2	1974	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186504360	186504360	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	186504360	A	C	186504360	3	2	342	1	0	0	0	0	1	0	0	0	5027	101	4	5	723	5	EIF4A2	3	186504360	Missense_Mutation	SNP	A	TCGA-BP-4782-01A-02D-1421-08	15181258	186504360	11518070	22	20638											
KLF3	51274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	38690220	38690220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	38690220	T	G	38690220	3	3	342	1	0	0	0	0	1	0	0	0	8354	1490	52	5	78	5	KLF3	4	38690220	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08		38690220	152464056	23	20639											
CDC23	8697	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137524758	137524758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	137524758	G	C	137524758	3	2	342	1	0	0	0	0	1	0	0	0	3063	1000	35	4	94	4	CDC23	5	137524758	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08		137524758	43390502	24	20640											
CTNNA1	1495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	138269640	138269640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	138269640	G	A	138269640	3	1	342	1	0	0	0	0	1	0	0	0	4014	1290	45	2	2649	2	CTNNA1	5	138269640	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	744882	138269640	42645620	25	20641											
C6orf105	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	11778959	11778959	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	11778959	G	C	11778959	3	2	342	1	0	0	0	0	1	0	0	0	2320	1000	35	4	740	4	C6orf105	6	11778959	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08		11778959	159336108	26	20642											
ATXN1	6310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	16328126	16328126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	16328126	T	C	16328126	3	2	342	1	0	0	0	0	1	0	0	0	1209	1406	49	3	2039	3	ATXN1	6	16328126	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	4549167	16328126	154786941	27	20643											
DNAH8	1769	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	38891824	38891824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	38891824	T	G	38891824	3	3	342	1	0	0	0	0	1	0	0	0	4609	1432	50	5	10471	5	DNAH8	6	38891824	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	22563698	38891824	132223243	28	20644											
RIMS1	22999	broad.mit.edu	37	6	72960946	72960946	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	72960946	A	A	72960946	4	1	342	1	0	0	0	0	0	1	0	0	13380	1764	61	5	2794	5	RIMS1	6	72960946	Nonsense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	34069122	72960946	98154121	29	20645											
CYTH3	9265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	6226736	6226736	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	6226736	T	G	6226736	3	3	342	1	0	0	0	0	1	0	0	0	4207	1580	55	5	1045	5	CYTH3	7	6226736	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08		6226736	152911927	30	20646											
RPA3	6119	broad.mit.edu;hgsc.bcm.edu	37	7	7680049	7680049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	7680049	T	C	7680049	3	2	342	1	0	0	0	0	1	0	0	0	13551	1464	51	3	380	3	RPA3	7	7680049	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	1453313	7680049	151458614	31	20647											
C7orf46	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23737866	23737866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	23737866	C	A	23737866	3	1	342	1	0	0	0	0	1	0	0	0	2398	854	30	4	711	4	C7orf46	7	23737866	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	16057817	23737866	135400797	32	20648											
HECW1	23072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	43503283	43503283	+	Silent	SNP	T	T	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	43503283	T	C	43503283	2	2	342	1	0	0	0	0	0	0	0	1	7049	1800	63	3		3	HECW1	7	43503283	Silent	SNP	T	TCGA-BP-4782-01A-02D-1421-08	19765417	43503283	115635380	33	20649											
MRPS17	51373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	56022693	56022693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	56022693	C	T	56022693	3	4	342	1	0	0	0	0	1	0	0	0	9834	594	21	2	221	2	MRPS17	7	56022693	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	12519410	56022693	103115970	34	20650											
RABGEF1	27342	broad.mit.edu;hgsc.bcm.edu	37	7	66248812	66248812	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	66248812	G	C	66248812	3	2	342	1	0	0	0	0	1	0	0	0	12979	1174	41	4	507	4	RABGEF1	7	66248812	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	10226119	66248812	92889851	35	20651											
LHFPL3	375612	broad.mit.edu	37	7	103969251	103969251	+	Silent	SNP	C	T	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	103969251	T	T	103969251	2	4	342	1	0	0	0	0	0	0	0	1	8773	639	23	1		1	LHFPL3	7	103969251	Silent	SNP	C	TCGA-BP-4782-01A-02D-1421-08	37720439	103969251	55169412	36	20652											
LRRC4	64101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127670011	127670011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	127670011	T	C	127670011	3	2	342	1	0	0	0	0	1	0	0	0	9004	1725	60	3	1282	3	LRRC4	7	127670011	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	23700760	127670011	31468652	37	20653											
RP1L1	94137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	10465398	10465398	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	10465398	C	G	10465398	3	3	342	1	0	0	0	0	1	0	0	0	13546	680	24	4	996	4	RP1L1	8	10465398	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08		10465398	135898624	38	20654											
RPL7	6129	broad.mit.edu;hgsc.bcm.edu	37	8	74204500	74204500	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	74204500	T	A	74204500	3	1	342	1	0	0	0	0	1	0	0	0	13612	1490	52	5	498	5	RPL7	8	74204500	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	63739102	74204500	72159522	39	20655											
TRAPPC9	83696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	141310714	141310714	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	141310714	C	T	141310714	5	4	342	1	0	0	0	0	0	0	1	0	16477	695	24	2	1876	2	TRAPPC9	8	141310714	Splice_Site	SNP	C	TCGA-BP-4782-01A-02D-1421-08	67106214	141310714	5053308	40	20656											
CHRAC1	54108	broad.mit.edu	37	8	141521619	141521619	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	-	141521619	-	-	141521619	7	5	342	1	0	1	0	1	0	0	0	0	3373	1625	57	0	23	0	CHRAC1	8	141521619	Frame_Shift_Del	DEL	T	TCGA-BP-4782-01A-02D-1421-08	210905	141521619	4842403	41	20657											
FANCG	2189	broad.mit.edu;hgsc.bcm.edu	37	9	35075002	35075002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	35075002	G	A	35075002	3	1	342	1	0	0	0	0	1	0	0	0	5675	1058	37	1	322	1	FANCG	9	35075002	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08		35075002	106138429	42	20658	252	2									
FANCG	2189	broad.mit.edu;hgsc.bcm.edu	37	9	35075004	35075004	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	35075004	C	G	35075004	3	3	342	1	0	0	0	0	1	0	0	0	5675	565	20	4	324	4	FANCG	9	35075004	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	2	35075004	106138427	43	20659	252	2									
GBA2	57704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35738346	35738346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	35738346	C	T	35738346	3	4	342	1	0	0	0	0	1	0	0	0	6274	739	26	2	719	2	GBA2	9	35738346	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	663342	35738346	105475085	44	20660											
GOLGA2	2801	broad.mit.edu	37	9	131021536	131021536	+	Silent	SNP	C	T	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	131021536	T	T	131021536	2	4	342	1	0	0	0	0	0	0	0	1	6559	697	25	2		2	GOLGA2	9	131021536	Silent	SNP	C	TCGA-BP-4782-01A-02D-1421-08	95283190	131021536	10191895	45	20661											
LIPF	8513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	90438403	90438403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	90438403	G	A	90438403	3	1	342	1	0	0	0	0	1	0	0	0	8829	1290	45	2	1196	2	LIPF	10	90438403	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08		90438403	45096344	46	20662											
TMEM80	283232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	703112	703112	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	703112	G	C	703112	3	2	342	1	0	0	0	0	1	0	0	0	16216	1145	40	4	487	4	TMEM80	11	703112	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08		703112	134303404	47	20663											
CAPN1	823	hgsc.bcm.edu	37	11	64972256	64972260	+	Frame_Shift_Del	DEL	TTATG	TTATG	-	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	TTATG	TTATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	-	64972260	TTATG	-	64972256	7	5	342	1	0	1	0	1	0	0	0	0	2624	1609	56	0	1306	0	CAPN1	11	64972256	Frame_Shift_Del	DEL	TTATG	TCGA-BP-4782-01A-02D-1421-08	64269144	64972256	70034260	48	20664											
KCTD14	65987	broad.mit.edu;ucsc.edu	37	11	77727894	77727894	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	77727894	T	T	77727894	4	4	342	1	0	0	0	0	0	1	0	0	8108	1195	42	4	258	4	KCTD14	11	77727894	Nonsense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	12755638	77727894	57278622	49	20665											
ITPR2	3709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	26839514	26839514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	26839514	T	C	26839514	3	2	342	1	0	0	0	0	1	0	0	0	7928	1435	50	3	7245	3	ITPR2	12	26839514	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08		26839514	107012381	50	20666											
KIF21A	55605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	39730918	39730918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	39730918	T	G	39730918	3	3	342	1	0	0	0	0	1	0	0	0	8295	1850	64	5	2714	5	KIF21A	12	39730918	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	12891404	39730918	94120977	51	20667											
STAT2	6773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56750313	56750313	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	56750313	G	A	56750313	4	1	342	1	0	0	0	0	0	1	0	0	15277	1299	45	2	2604	2	STAT2	12	56750313	Nonsense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	17019395	56750313	77101582	52	20668											
INHBC	3626	hgsc.bcm.edu	37	12	57843412	57843413	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	57843413	-	G	57843412	7	5	342	1	0	1	1	0	0	0	0	0	7750	175	7	0	672	0	INHBC	12	57843412	Frame_Shift_Ins	INS	-	TCGA-BP-4782-01A-02D-1421-08	1093099	57843412	76008483	53	20669											
CYP27B1	1594	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	58158259	58158259	+	Silent	SNP	C	C	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	58158259	C	T	58158259	2	4	342	1	0	0	0	0	0	0	0	1	4161	912	32	2		2	CYP27B1	12	58158259	Silent	SNP	C	TCGA-BP-4782-01A-02D-1421-08	314847	58158259	75693636	54	20670											
FRY	10129	broad.mit.edu;ucsc.edu	37	13	32841377	32841377	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	32841377	A	A	32841377	3	1	342	1	0	0	0	0	1	0	0	0	6070	827	29	4	8235	4	FRY	13	32841377	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08		32841377	82328501	55	20671											
MAB21L1	4081	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	36049398	36049398	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	36049398	T	A	36049398	3	1	342	1	0	0	0	0	1	0	0	0	9148	1551	54	5	205	5	MAB21L1	13	36049398	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	3208021	36049398	79120480	56	20672											
WDFY2	115825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	52293353	52293353	+	Silent	SNP	G	G	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	52293353	G	C	52293353	2	2	342	1	0	0	0	0	0	0	0	1	17281	1045	37	4		4	WDFY2	13	52293353	Silent	SNP	G	TCGA-BP-4782-01A-02D-1421-08	16243955	52293353	62876525	57	20673											
MYH7	4625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23891451	23891451	+	Silent	SNP	C	C	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	23891451	C	A	23891451	2	1	342	1	0	0	0	0	0	0	0	1	10046	813	29	4		4	MYH7	14	23891451	Silent	SNP	C	TCGA-BP-4782-01A-02D-1421-08		23891451	83458089	58	20674											
RFX7	64864	hgsc.bcm.edu;ucsc.edu	37	15	56393665	56393665	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	-	56393665	T	-	56393665	7	5	342	1	0	1	0	1	0	0	0	0	13281	1609	56	0	3691	0	RFX7	15	56393665	Frame_Shift_Del	DEL	T	TCGA-BP-4782-01A-02D-1421-08		56393665	46137727	59	20675											
SPSB3	90864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1827748	1827748	+	Missense_Mutation	SNP	C	C	G	rs147512809	alternate_allele	TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	1827748	C	G	1827748	3	3	342	1	0	0	0	0	1	0	0	0	15126	695	24	4	354	4	SPSB3	16	1827748	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08		1827748	88527005	60	20676											
PPL	5493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4953994	4953994	+	Silent	SNP	C	C	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	4953994	C	A	4953994	2	1	342	1	0	0	0	0	0	0	0	1	12344	813	29	4		4	PPL	16	4953994	Silent	SNP	C	TCGA-BP-4782-01A-02D-1421-08	3126246	4953994	85400759	61	20677											
PYCARD	29108	hgsc.bcm.edu	37	16	31213523	31213523	+	Silent	SNP	G	G	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	31213523	G	T	31213523	2	4	342	1	0	0	0	0	0	0	0	1	12867	985	34	4		4	PYCARD	16	31213523	Silent	SNP	G	TCGA-BP-4782-01A-02D-1421-08	26259529	31213523	59141230	62	20678											
TMEM208	29100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67262757	67262757	+	Silent	SNP	T	T	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	67262757	T	A	67262757	2	1	342	1	0	0	0	0	0	0	0	1	16145	1538	54	5		5	TMEM208	16	67262757	Silent	SNP	T	TCGA-BP-4782-01A-02D-1421-08	36049234	67262757	23091996	63	20679											
GPR172B	0	hgsc.bcm.edu;ucsc.edu	37	17	4937468	4937468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	4937468	C	T	4937468	3	4	342	1	0	0	0	0	1	0	0	0	6677	739	26	2	1042	2	GPR172B	17	4937468	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08		4937468	76257742	64	20680											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11648206	11648206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	11648206	G	T	11648206	3	4	342	1	0	0	0	0	1	0	0	0	4610	991	35	4	6326	4	DNAH9	17	11648206	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	6710738	11648206	69547004	65	20681											
TMUB2	79089	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42266747	42266747	+	Silent	SNP	G	G	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	42266747	G	A	42266747	2	1	342	1	0	0	0	0	0	0	0	1	16277	962	34	2		2	TMUB2	17	42266747	Silent	SNP	G	TCGA-BP-4782-01A-02D-1421-08	30618541	42266747	38928463	66	20682											
PLEKHM1	9842	hgsc.bcm.edu;ucsc.edu	37	17	43517526	43517526	+	RNA	SNP	T	T	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	43517526	T	C	43517526	1	2	342	0	1	0	0	0	0	0	0	0	12087	1769	61	3		3	PLEKHM1	17	43517526	RNA	SNP	T	TCGA-BP-4782-01A-02D-1421-08	1250779	43517526	37677684	67	20683											
CACNA1G	8913	broad.mit.edu;ucsc.edu	37	17	48703477	48703477	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	48703477	A	A	48703477	3	1	342	1	0	0	0	0	1	0	0	0	2546	1522	53	5	6916	5	CACNA1G	17	48703477	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	5185951	48703477	32491733	68	20684											
KIF2B	84643	hgsc.bcm.edu;ucsc.edu	37	17	51902361	51902361	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	-	51902361	A	-	51902361	7	5	342	1	0	1	0	1	0	0	0	0	8305	130	5	0	1969	0	KIF2B	17	51902361	Frame_Shift_Del	DEL	A	TCGA-BP-4782-01A-02D-1421-08	3198884	51902361	29292849	69	20685											
UNK	85451	broad.mit.edu	37	17	73814863	73814863	+	Silent	SNP	C	T	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	73814863	T	T	73814863	2	4	342	1	0	0	0	0	0	0	0	1	17012	912	32	2		2	UNK	17	73814863	Silent	SNP	C	TCGA-BP-4782-01A-02D-1421-08	21912502	73814863	7380347	70	20686											
UNK	85451	hgsc.bcm.edu;ucsc.edu	37	17	73816152	73816152	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	-	73816152	C	-	73816152	7	5	342	1	0	1	0	1	0	0	0	0	17012	477	17	0	2082	0	UNK	17	73816152	Frame_Shift_Del	DEL	C	TCGA-BP-4782-01A-02D-1421-08	1289	73816152	7379058	71	20687											
QRICH2	84074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74276934	74276934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	74276934	C	T	74276934	3	4	342	1	0	0	0	0	1	0	0	0	12893	652	23	1	1169	1	QRICH2	17	74276934	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	460782	74276934	6918276	72	20688											
APC2	10297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1461048	1461048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	1461048	A	G	1461048	3	3	342	1	0	0	0	0	1	0	0	0	764	217	8	3	1580	3	APC2	19	1461048	Missense_Mutation	SNP	A	TCGA-BP-4782-01A-02D-1421-08		1461048	57667935	73	20689											
CPAMD8	27151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17010350	17010350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	17010350	T	G	17010350	3	3	342	1	0	0	0	0	1	0	0	0	3797	1667	58	5	897	5	CPAMD8	19	17010350	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	15549302	17010350	42118633	74	20690											
TMEM143	55260	broad.mit.edu	37	19	48845836	48845836	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	48845836	T	T	48845836	3	4	342	1	0	0	0	0	1	0	0	0	16069	1174	41	4	465	4	TMEM143	19	48845836	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	31835486	48845836	10283147	75	20691											
MED25	81857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50322487	50322487	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	50322487	C	G	50322487	3	3	342	1	0	0	0	0	1	0	0	0	9450	855	30	4	249	4	MED25	19	50322487	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	1476651	50322487	8806496	76	20692											
ZNF17	7565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57931180	57931180	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	57931180	C	G	57931180	3	3	342	1	0	0	0	0	1	0	0	0	17755	623	22	4	330	4	ZNF17	19	57931180	Missense_Mutation	SNP	C	TCGA-BP-4782-01A-02D-1421-08	7608693	57931180	1197803	77	20693											
CD93	22918	broad.mit.edu;hgsc.bcm.edu	37	20	23066499	23066499	+	Silent	SNP	G	G	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	23066499	G	A	23066499	2	1	342	1	0	0	0	0	0	0	0	1	3049	962	34	2		2	CD93	20	23066499	Silent	SNP	G	TCGA-BP-4782-01A-02D-1421-08		23066499	39959021	78	20694											
RBM39	9584	broad.mit.edu;hgsc.bcm.edu	37	20	34292611	34292611	+	Silent	SNP	A	A	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	34292611	A	G	34292611	2	3	342	1	0	0	0	0	0	0	0	1	13146	98	4	3		3	RBM39	20	34292611	Silent	SNP	A	TCGA-BP-4782-01A-02D-1421-08	11226112	34292611	28732909	79	20695											
SH3BGR	6450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	40834425	40834425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	40834425	A	G	40834425	3	3	342	1	0	0	0	0	1	0	0	0	14253	14	1	3	365	3	SH3BGR	21	40834425	Missense_Mutation	SNP	A	TCGA-BP-4782-01A-02D-1421-08		40834425	7295470	80	20696											
RIPK4	54101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	43164104	43164104	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	43164104	T	A	43164104	3	1	342	1	0	0	0	0	1	0	0	0	13396	1667	58	5	1229	5	RIPK4	21	43164104	Missense_Mutation	SNP	T	TCGA-BP-4782-01A-02D-1421-08	2329679	43164104	4965791	81	20697											
PRAME	23532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	22890580	22890580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	G	22890580	A	G	22890580	3	3	342	1	0	0	0	0	1	0	0	0	12434	275	10	3	94	3	PRAME	22	22890580	Missense_Mutation	SNP	A	TCGA-BP-4782-01A-02D-1421-08		22890580	28413986	82	20698											
APOBEC3F	200316	broad.mit.edu;hgsc.bcm.edu	37	22	39441014	39441014	+	Silent	SNP	T	T	A	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	A	39441014	T	A	39441014	2	1	342	1	0	0	0	0	0	0	0	1	793	1567	55	5		5	APOBEC3F	22	39441014	Silent	SNP	T	TCGA-BP-4782-01A-02D-1421-08	16550434	39441014	11863552	83	20699											
CDKL5	6792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	18622979	18622979	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	18622979	G	C	18622979	3	2	342	1	0	0	0	0	1	0	0	0	3159	1368	48	4	1977	4	CDKL5	23	18622979	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08		18622979	136647581	84	20700											
NHSL2	340527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	71359245	71359245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	C	71359245	A	C	71359245	3	2	342	1	0	0	0	0	1	0	0	0	10419	333	12	5	1869	5	NHSL2	23	71359245	Missense_Mutation	SNP	A	TCGA-BP-4782-01A-02D-1421-08	52736266	71359245	83911315	85	20701											
FAM46D	169966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	79698411	79698411	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	79698411	A	T	79698411	3	4	342	1	0	0	0	0	1	0	0	0	5575	449	16	5	375	5	FAM46D	23	79698411	Missense_Mutation	SNP	A	TCGA-BP-4782-01A-02D-1421-08	8339166	79698411	75572149	86	20702											
ALG13	79868	hgsc.bcm.edu;ucsc.edu	37	X	110951455	110951455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	-	110951455	T	-	110951455	7	5	342	1	0	1	0	1	0	0	0	0	515	1551	54	0	740	0	ALG13	23	110951455	Frame_Shift_Del	DEL	T	TCGA-BP-4782-01A-02D-1421-08	31253044	110951455	44319105	87	20703											
NKAP	79576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	119077352	119077352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	119077352	G	T	119077352	3	4	342	1	0	0	0	0	1	0	0	0	10446	1116	39	4	1066	4	NKAP	23	119077352	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	8125897	119077352	36193208	88	20704											
CUL4B	8450	broad.mit.edu;ucsc.edu	37	X	119694026	119694026	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4782-01A-02D-1421-08	TCGA-BP-4782-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	468ba8c3-0141-4150-aeba-fa0a7e8e007e	bae9db07-4abb-48f6-a598-9477dc0795b4	T	119694026	T	T	119694026	3	4	342	1	0	0	0	0	1	0	0	0	4060	1136	40	4	2299	4	CUL4B	23	119694026	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-1421-08	616674	119694026	35576534	89	20705											
VHL	7428	hgsc.bcm.edu	37	3	10183871	10183871	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4782-01A-02D-2099-10	TCGA-BP-4782-11A-01W-1476-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq	.	.	PacBio RS	ec9b5e3e-36a9-4533-a621-1b4864773544	ecaca359-731a-46a3-99dd-6e34d91ccb13	C	10183871	G	C	10183871	3	2	343	1	0	0	0	0	1	0	0	0	17174	1014	35	4	342	4	VHL	3	10183871	Missense_Mutation	SNP	G	TCGA-BP-4782-01A-02D-2099-10		10183871	187838559	1	20706											
CSMD2	114784	hgsc.bcm.edu	37	1	34191120	34191120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	34191120	T	C	34191120	3	2	344	1	0	0	0	0	1	0	0	0	3947	1725	60	3	8270	3	CSMD2	1	34191120	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10		34191120	215059501	1	20707											
ST7L	54879	hgsc.bcm.edu	37	1	113084576	113084576	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	G	113084576	T	G	113084576	3	3	344	1	0	0	0	0	1	0	0	0	15242	1606	56	5	148	5	ST7L	1	113084576	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10	78893456	113084576	136166045	2	20708											
CASQ1	844	hgsc.bcm.edu;ucsc.edu	37	1	160167358	160167358	+	Splice_Site	SNP	G	G	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	160167358	G	C	160167358	5	2	344	1	0	0	0	0	0	0	1	0	2682	956	33	4	808	4	CASQ1	1	160167358	Splice_Site	SNP	G	TCGA-BP-4787-01A-01D-1373-10	47082782	160167358	89083263	3	20709											
LMX1A	4009	hgsc.bcm.edu	37	1	165183037	165183037	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	165183037	A	C	165183037	3	2	344	1	0	0	0	0	1	0	0	0	8868	214	8	5	658	5	LMX1A	1	165183037	Missense_Mutation	SNP	A	TCGA-BP-4787-01A-01D-1373-10	5015679	165183037	84067584	4	20710											
GREB1	9687	hgsc.bcm.edu	37	2	11702633	11702633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	11702633	G	A	11702633	3	1	344	1	0	0	0	0	1	0	0	0	6767	1001	35	2	208	2	GREB1	2	11702633	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10		11702633	231496740	5	20711											
HEATR5B	54497	hgsc.bcm.edu	37	2	37283587	37283587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	37283587	G	A	37283587	3	1	344	1	0	0	0	0	1	0	0	0	7039	1377	48	2	3904	2	HEATR5B	2	37283587	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10	25580954	37283587	205915786	6	20712											
FBXO11	80204	hgsc.bcm.edu	37	2	48040362	48040364	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	-	48040364	AAC	-	48040362	7	5	344	1	0	1	0	1	0	0	0	0	5734	349	13	0	655	0	FBXO11	2	48040362	In_Frame_Del	DEL	AAC	TCGA-BP-4787-01A-01D-1373-10	10756775	48040362	195159011	7	20713											
SUCLG1	8802	hgsc.bcm.edu	37	2	84652567	84652567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	T	84652567	G	T	84652567	3	4	344	1	0	0	0	0	1	0	0	0	15376	1000	35	4	62	4	SUCLG1	2	84652567	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10	36612205	84652567	158546806	8	20714											
CERKL	375298	hgsc.bcm.edu	37	2	182403925	182403925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	T	182403925	C	T	182403925	3	4	344	1	0	0	0	0	1	0	0	0	3270	594	21	2	174	2	CERKL	2	182403925	Missense_Mutation	SNP	C	TCGA-BP-4787-01A-01D-1373-10	97751358	182403925	60795448	9	20715											
NBEAL1	65065	hgsc.bcm.edu	37	2	204039911	204039911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	204039911	T	A	204039911	3	1	344	1	0	0	0	0	1	0	0	0	10195	1841	64	5	6436	5	NBEAL1	2	204039911	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10	21635986	204039911	39159462	10	20716											
FN1	2335	hgsc.bcm.edu;ucsc.edu	37	2	216295547	216295547	+	Silent	SNP	C	C	T	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	T	216295547	C	T	216295547	2	4	344	1	0	0	0	0	0	0	0	1	5969	842	30	2		2	FN1	2	216295547	Silent	SNP	C	TCGA-BP-4787-01A-01D-1373-10	12255636	216295547	26903826	11	20717											
DLEC1	9940	hgsc.bcm.edu;ucsc.edu	37	3	38158548	38158548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	G	38158548	A	G	38158548	3	3	344	1	0	0	0	0	1	0	0	0	4554	304	11	3	4380	3	DLEC1	3	38158548	Missense_Mutation	SNP	A	TCGA-BP-4787-01A-01D-1373-10		38158548	159863882	12	20718											
TTC33	23548	hgsc.bcm.edu	37	5	40716407	40716407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	40716407	T	A	40716407	3	1	344	1	0	0	0	0	1	0	0	0	16714	1551	54	5	163	5	TTC33	5	40716407	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10		40716407	140198853	13	20719											
SLC27A6	28965	hgsc.bcm.edu;ucsc.edu	37	5	128368959	128368959	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	128368959	G	C	128368959	3	2	344	1	0	0	0	0	1	0	0	0	14543	1232	43	4	1882	4	SLC27A6	5	128368959	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10	87652552	128368959	52546301	14	20720											
NMUR2	56923	hgsc.bcm.edu	37	5	151784357	151784357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	T	151784357	C	T	151784357	3	4	344	1	0	0	0	0	1	0	0	0	10514	478	17	2	945	2	NMUR2	5	151784357	Missense_Mutation	SNP	C	TCGA-BP-4787-01A-01D-1373-10	23415398	151784357	29130903	15	20721											
EYS	346007	hgsc.bcm.edu;ucsc.edu	37	6	64791859	64791859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	T	64791859	G	T	64791859	3	4	344	1	0	0	0	0	1	0	0	0	5334	1174	41	4	3021	4	EYS	6	64791859	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10		64791859	106323208	16	20722											
NPY	4852	hgsc.bcm.edu;ucsc.edu	37	7	24329150	24329150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	24329150	T	C	24329150	3	2	344	1	0	0	0	0	1	0	0	0	10614	1493	52	3	227	3	NPY	7	24329150	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10		24329150	134809513	17	20723											
FGL2	10875	hgsc.bcm.edu	37	7	76828961	76828961	+	Silent	SNP	T	T	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	76828961	T	C	76828961	2	2	344	1	0	0	0	0	0	0	0	1	5880	1606	56	3		3	FGL2	7	76828961	Silent	SNP	T	TCGA-BP-4787-01A-01D-1373-10	52499811	76828961	82309702	18	20724											
FBXL13	222235	hgsc.bcm.edu;ucsc.edu	37	7	102518015	102518015	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	102518015	A	C	102518015	3	2	344	1	0	0	0	0	1	0	0	0	5716	11	1	5	693	5	FBXL13	7	102518015	Missense_Mutation	SNP	A	TCGA-BP-4787-01A-01D-1373-10	25689054	102518015	56620648	19	20725											
PTPRZ1	5803	hgsc.bcm.edu	37	7	121651295	121651295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	121651295	C	A	121651295	3	1	344	1	0	0	0	0	1	0	0	0	12827	855	30	4	2241	4	PTPRZ1	7	121651295	Missense_Mutation	SNP	C	TCGA-BP-4787-01A-01D-1373-10	19133280	121651295	37487368	20	20726											
VPS13B	157680	hgsc.bcm.edu	37	8	100155297	100155297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	100155297	G	A	100155297	3	1	344	1	0	0	0	0	1	0	0	0	17202	1290	45	2	1835	2	VPS13B	8	100155297	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10		100155297	46208725	21	20727											
IFNB1	3456	hgsc.bcm.edu;ucsc.edu	37	9	21077494	21077494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	21077494	T	A	21077494	3	1	344	1	0	0	0	0	1	0	0	0	7553	1838	64	5	192	5	IFNB1	9	21077494	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10		21077494	120135937	22	20728											
C9orf3	84909	hgsc.bcm.edu	37	9	97522820	97522820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	97522820	C	A	97522820	3	1	344	1	0	0	0	0	1	0	0	0	2479	681	24	4	757	4	C9orf3	9	97522820	Missense_Mutation	SNP	C	TCGA-BP-4787-01A-01D-1373-10	76445326	97522820	43690611	23	20729											
BAT2L1	0	hgsc.bcm.edu	37	9	134308050	134308050	+	Silent	SNP	C	C	G	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	G	134308050	C	G	134308050	2	3	344	1	0	0	0	0	0	0	0	1	1320	610	22	4		4	BAT2L1	9	134308050	Silent	SNP	C	TCGA-BP-4787-01A-01D-1373-10	36785230	134308050	6905381	24	20730											
PNPLA7	375775	hgsc.bcm.edu	37	9	140416146	140416146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	140416146	C	A	140416146	3	1	344	1	0	0	0	0	1	0	0	0	12177	681	24	4	3233	4	PNPLA7	9	140416146	Missense_Mutation	SNP	C	TCGA-BP-4787-01A-01D-1373-10	6108096	140416146	797285	25	20731											
CUBN	8029	hgsc.bcm.edu;ucsc.edu	37	10	16873255	16873255	+	Silent	SNP	G	G	T	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	T	16873255	G	T	16873255	2	4	344	1	0	0	0	0	0	0	0	1	4053	987	35	4		4	CUBN	10	16873255	Silent	SNP	G	TCGA-BP-4787-01A-01D-1373-10		16873255	118661492	26	20732											
GDF10	2662	hgsc.bcm.edu;ucsc.edu	37	10	48428675	48428675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	48428675	T	C	48428675	3	2	344	1	0	0	0	0	1	0	0	0	6318	1638	57	3	233	3	GDF10	10	48428675	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10	31555420	48428675	87106072	27	20733											
ARFGAP2	84364	hgsc.bcm.edu	37	11	47195002	47195002	+	Silent	SNP	A	A	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	47195002	A	C	47195002	2	2	344	1	0	0	0	0	0	0	0	1	850	117	5	5		5	ARFGAP2	11	47195002	Silent	SNP	A	TCGA-BP-4787-01A-01D-1373-10		47195002	87811514	28	20734											
OR10AG1	282770	hgsc.bcm.edu;ucsc.edu	37	11	55735474	55735474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	55735474	G	A	55735474	3	1	344	1	0	0	0	0	1	0	0	0	10904	1000	35	2	442	2	OR10AG1	11	55735474	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10	8540472	55735474	79271042	29	20735											
RIN1	9610	hgsc.bcm.edu	37	11	66100155	66100155	+	Silent	SNP	T	T	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	66100155	T	C	66100155	2	2	344	1	0	0	0	0	0	0	0	1	13384	1567	55	3		3	RIN1	11	66100155	Silent	SNP	T	TCGA-BP-4787-01A-01D-1373-10	10364681	66100155	68906361	30	20736											
SHANK2	22941	hgsc.bcm.edu;ucsc.edu	37	11	70349010	70349010	+	Silent	SNP	G	G	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	70349010	G	A	70349010	2	1	344	1	0	0	0	0	0	0	0	1	14278	1045	37	1		1	SHANK2	11	70349010	Silent	SNP	G	TCGA-BP-4787-01A-01D-1373-10	4248855	70349010	64657506	31	20737											
MPZL3	196264	hgsc.bcm.edu;ucsc.edu	37	11	118106270	118106270	+	Silent	SNP	A	A	G	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	G	118106270	A	G	118106270	2	3	344	1	0	0	0	0	0	0	0	1	9758	1	1	3		3	MPZL3	11	118106270	Silent	SNP	A	TCGA-BP-4787-01A-01D-1373-10	47757260	118106270	16900246	32	20738											
ARCN1	372	hgsc.bcm.edu;ucsc.edu	37	11	118454621	118454621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	T	118454621	G	T	118454621	3	4	344	1	0	0	0	0	1	0	0	0	842	1174	41	4	559	4	ARCN1	11	118454621	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10	348351	118454621	16551895	33	20739											
KDM5A	5927	hgsc.bcm.edu;ucsc.edu	37	12	416170	416170	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	416170	T	A	416170	3	1	344	1	0	0	0	0	1	0	0	0	8140	1435	50	5	1076	5	KDM5A	12	416170	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10		416170	133435725	34	20740											
C12orf60	144608	hgsc.bcm.edu	37	12	14976418	14976419	+	Frame_Shift_Del	DEL	TA	TA	-	rs139293175	bycluster;by1000genomes	TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	-	14976419	TA	-	14976418	7	5	344	1	0	1	0	1	0	0	0	0	1705	1509	53	0	551	0	C12orf60	12	14976418	Frame_Shift_Del	DEL	TA	TCGA-BP-4787-01A-01D-1373-10	14560248	14976418	118875477	35	20741											
ST8SIA1	6489	hgsc.bcm.edu;ucsc.edu	37	12	22440140	22440140	+	Silent	SNP	G	G	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	22440140	G	A	22440140	2	1	344	1	0	0	0	0	0	0	0	1	15243	1136	40	1		1	ST8SIA1	12	22440140	Silent	SNP	G	TCGA-BP-4787-01A-01D-1373-10	7463722	22440140	111411755	36	20742											
ACSS3	79611	hgsc.bcm.edu	37	12	81503485	81503485	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	81503485	T	C	81503485	5	2	344	1	0	0	0	0	0	0	1	0	190	1652	57	3	464	3	ACSS3	12	81503485	Splice_Site	SNP	T	TCGA-BP-4787-01A-01D-1373-10	59063345	81503485	52348410	37	20743											
SLC24A6	80024	hgsc.bcm.edu	37	12	113737765	113737765	+	Silent	SNP	T	T	G	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	G	113737765	T	G	113737765	2	3	344	1	0	0	0	0	0	0	0	1	14483	1654	58	5		5	SLC24A6	12	113737765	Silent	SNP	T	TCGA-BP-4787-01A-01D-1373-10	32234280	113737765	20114130	38	20744											
FRMD6	122786	hgsc.bcm.edu	37	14	52174837	52174837	+	Silent	SNP	T	T	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	52174837	T	A	52174837	2	1	344	1	0	0	0	0	0	0	0	1	6061	1771	62	5		5	FRMD6	14	52174837	Silent	SNP	T	TCGA-BP-4787-01A-01D-1373-10		52174837	55174703	39	20745											
ZWILCH	55055	hgsc.bcm.edu	37	15	66824728	66824728	+	Silent	SNP	C	C	T	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	T	66824728	C	T	66824728	2	4	344	1	0	0	0	0	0	0	0	1	18260	816	29	2		2	ZWILCH	15	66824728	Silent	SNP	C	TCGA-BP-4787-01A-01D-1373-10		66824728	35706664	40	20746											
UACA	55075	hgsc.bcm.edu	37	15	70963410	70963410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	70963410	T	C	70963410	3	2	344	1	0	0	0	0	1	0	0	0	16836	1763	61	3	3081	3	UACA	15	70963410	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10	4138682	70963410	31567982	41	20747											
GRIN2A	2903	hgsc.bcm.edu;ucsc.edu	37	16	9916232	9916232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	9916232	G	A	9916232	3	1	344	1	0	0	0	0	1	0	0	0	6786	1000	35	2	2353	2	GRIN2A	16	9916232	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10		9916232	80438521	42	20748											
CDH8	1006	hgsc.bcm.edu;ucsc.edu	37	16	61935249	61935249	+	Silent	SNP	C	C	T	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	T	61935249	C	T	61935249	2	4	344	1	0	0	0	0	0	0	0	1	3118	680	24	2		2	CDH8	16	61935249	Silent	SNP	C	TCGA-BP-4787-01A-01D-1373-10	52019017	61935249	28419504	43	20749											
CDH13	1012	hgsc.bcm.edu;ucsc.edu	37	16	83816959	83816959	+	Silent	SNP	C	C	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	83816959	C	A	83816959	2	1	344	1	0	0	0	0	0	0	0	1	3101	816	29	4		4	CDH13	16	83816959	Silent	SNP	C	TCGA-BP-4787-01A-01D-1373-10	21881710	83816959	6537794	44	20750											
ACSF2	80221	hgsc.bcm.edu	37	17	48549820	48549820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	48549820	T	C	48549820	3	2	344	1	0	0	0	0	1	0	0	0	175	1580	55	3	1401	3	ACSF2	17	48549820	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10		48549820	32645390	45	20751											
SMURF2	64750	hgsc.bcm.edu	37	17	62551963	62551963	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	62551963	G	C	62551963	3	2	344	1	0	0	0	0	1	0	0	0	14833	942	33	4	685	4	SMURF2	17	62551963	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10	14002143	62551963	18643247	46	20752											
DSC2	1824	hgsc.bcm.edu	37	18	28647999	28648000	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	TC	28648000	-	TC	28647999	7	5	344	1	0	1	1	0	0	0	0	0	4768	1606	56	0	21	0	DSC2	18	28647999	Frame_Shift_Ins	INS	-	TCGA-BP-4787-01A-01D-1373-10		28647999	49429249	47	20753											
CYP4F11	57834	hgsc.bcm.edu	37	19	16024651	16024651	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	16024651	A	C	16024651	3	2	344	1	0	0	0	0	1	0	0	0	4188	246	9	5	112	5	CYP4F11	19	16024651	Missense_Mutation	SNP	A	TCGA-BP-4787-01A-01D-1373-10		16024651	43104332	48	20754											
CEACAM1	634	hgsc.bcm.edu;ucsc.edu	37	19	43023295	43023295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	43023295	T	A	43023295	3	1	344	1	0	0	0	0	1	0	0	0	3189	1841	64	5	646	5	CEACAM1	19	43023295	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10	26998644	43023295	16105688	49	20755											
ZC3H7B	23264	hgsc.bcm.edu;ucsc.edu	37	22	41721776	41721776	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	A	41721776	T	A	41721776	3	1	344	1	0	0	0	0	1	0	0	0	17585	1725	60	5	149	5	ZC3H7B	22	41721776	Missense_Mutation	SNP	T	TCGA-BP-4787-01A-01D-1373-10		41721776	9582790	50	20756											
AMOT	154796	hgsc.bcm.edu	37	X	112022297	112022298	+	In_Frame_Ins	INS	-	-	AGG	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	AGG	112022298	-	AGG	112022297	7	5	344	1	0	1	1	0	0	0	0	0	582	710	25	0	177	0	AMOT	23	112022297	In_Frame_Ins	INS	-	TCGA-BP-4787-01A-01D-1373-10		112022297	43248263	51	20757											
GABRA3	2556	hgsc.bcm.edu;ucsc.edu	37	X	151336969	151336969	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4787-01A-01D-1373-10	TCGA-BP-4787-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9df0698d-bfe4-4afc-aaab-720a9471b04b	eef34c03-44b0-4812-ae4d-6496b1ccd643	C	151336969	G	C	151336969	3	2	344	1	0	0	0	0	1	0	0	0	6169	1174	41	4	272	4	GABRA3	23	151336969	Missense_Mutation	SNP	G	TCGA-BP-4787-01A-01D-1373-10	39314672	151336969	3933591	52	20758											
EPHA8	2046	hgsc.bcm.edu	37	1	22902954	22902954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	T	22902954	C	T	22902954	3	4	345	1	0	0	0	0	1	0	0	0	5175	739	26	2	414	2	EPHA8	1	22902954	Missense_Mutation	SNP	C	TCGA-BP-4789-01A-01D-1373-10		22902954	226347667	1	20759											
ZFYVE9	9372	hgsc.bcm.edu	37	1	52703736	52703736	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	52703736	T	A	52703736	4	1	345	1	0	0	0	0	0	1	0	0	17683	1821	63	5	653	5	ZFYVE9	1	52703736	Nonsense_Mutation	SNP	T	TCGA-BP-4789-01A-01D-1373-10	29800782	52703736	196546885	2	20760											
FAM5B	57795	hgsc.bcm.edu;ucsc.edu	37	1	177249970	177249970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	T	177249970	C	T	177249970	3	4	345	1	0	0	0	0	1	0	0	0	5600	507	18	2	1684	2	FAM5B	1	177249970	Missense_Mutation	SNP	C	TCGA-BP-4789-01A-01D-1373-10	124546234	177249970	72000651	3	20761											
PIK3C2B	5287	hgsc.bcm.edu	37	1	204411750	204411750	+	Silent	SNP	G	G	C	rs147527449	alternate_allele	TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	C	204411750	G	C	204411750	2	2	345	1	0	0	0	0	0	0	0	1	11917	1306	46	4		4	PIK3C2B	1	204411750	Silent	SNP	G	TCGA-BP-4789-01A-01D-1373-10	27161780	204411750	44838871	4	20762											
ALK	238	hgsc.bcm.edu	37	2	29450494	29450494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	T	29450494	C	T	29450494	3	4	345	1	0	0	0	0	1	0	0	0	525	913	32	2	2054	2	ALK	2	29450494	Missense_Mutation	SNP	C	TCGA-BP-4789-01A-01D-1373-10		29450494	213748879	5	20763											
SAP130	79595	hgsc.bcm.edu	37	2	128775373	128775373	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	128775373	G	A	128775373	4	1	345	1	0	0	0	0	0	1	0	0	13844	1386	48	2	3020	2	SAP130	2	128775373	Nonsense_Mutation	SNP	G	TCGA-BP-4789-01A-01D-1373-10	99324879	128775373	114424000	6	20764											
PASK	23178	hgsc.bcm.edu	37	2	242082263	242082263	+	Missense_Mutation	SNP	G	G	A	rs144572631		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	242082263	G	A	242082263	3	1	345	1	0	0	0	0	1	0	0	0	11479	1377	48	2	3854	2	PASK	2	242082263	Missense_Mutation	SNP	G	TCGA-BP-4789-01A-01D-1373-10	113306890	242082263	1117110	7	20765											
MED12L	116931	hgsc.bcm.edu	37	3	150845660	150845660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	C	150845660	T	C	150845660	3	2	345	1	0	0	0	0	1	0	0	0	9436	1406	49	3	459	3	MED12L	3	150845660	Missense_Mutation	SNP	T	TCGA-BP-4789-01A-01D-1373-10		150845660	47176770	8	20766											
ATP11B	23200	hgsc.bcm.edu	37	3	182563289	182563289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	182563289	A	G	182563289	3	3	345	1	0	0	0	0	1	0	0	0	1120	15	1	3	782	3	ATP11B	3	182563289	Missense_Mutation	SNP	A	TCGA-BP-4789-01A-01D-1373-10	31717629	182563289	15459141	9	20767											
AGXT2L1	64850	hgsc.bcm.edu	37	4	109677614	109677614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	109677614	G	A	109677614	3	1	345	1	0	0	0	0	1	0	0	0	406	1057	37	1	1169	1	AGXT2L1	4	109677614	Missense_Mutation	SNP	G	TCGA-BP-4789-01A-01D-1373-10		109677614	81476662	10	20768											
TRIO	7204	hgsc.bcm.edu;ucsc.edu	37	5	14364826	14364826	+	Silent	SNP	T	T	A	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	14364826	T	A	14364826	2	1	345	1	0	0	0	0	0	0	0	1	16564	1770	62	5		5	TRIO	5	14364826	Silent	SNP	T	TCGA-BP-4789-01A-01D-1373-10		14364826	166550434	11	20769											
TDRD6	221400	hgsc.bcm.edu	37	6	46658231	46658231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	C	46658231	G	C	46658231	3	2	345	1	0	0	0	0	1	0	0	0	15746	1377	48	4	2368	4	TDRD6	6	46658231	Missense_Mutation	SNP	G	TCGA-BP-4789-01A-01D-1373-10		46658231	124456836	12	20770											
INTS1	26173	hgsc.bcm.edu	37	7	1523682	1523682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	1523682	C	G	1523682	3	3	345	1	0	0	0	0	1	0	0	0	7782	681	24	4	3282	4	INTS1	7	1523682	Missense_Mutation	SNP	C	TCGA-BP-4789-01A-01D-1373-10		1523682	157614981	13	20771											
FZD1	8321	hgsc.bcm.edu	37	7	90895381	90895381	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	C	90895381	G	C	90895381	3	2	345	1	0	0	0	0	1	0	0	0	6135	1232	43	4	1188	4	FZD1	7	90895381	Missense_Mutation	SNP	G	TCGA-BP-4789-01A-01D-1373-10	89371699	90895381	68243282	14	20772											
MOGAT3	346606	hgsc.bcm.edu	37	7	100844112	100844112	+	Silent	SNP	C	C	T	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	T	100844112	C	T	100844112	2	4	345	1	0	0	0	0	0	0	0	1	9703	796	28	2		2	MOGAT3	7	100844112	Silent	SNP	C	TCGA-BP-4789-01A-01D-1373-10	9948731	100844112	58294551	15	20773											
TAS2R16	50833	hgsc.bcm.edu;ucsc.edu	37	7	122634964	122634964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	T	122634964	G	T	122634964	3	4	345	1	0	0	0	0	1	0	0	0	15581	1261	44	4	154	4	TAS2R16	7	122634964	Missense_Mutation	SNP	G	TCGA-BP-4789-01A-01D-1373-10	21790852	122634964	36503699	16	20774											
KIAA0196	9897	hgsc.bcm.edu	37	8	126036907	126036907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	126036907	T	G	126036907	3	3	345	1	0	0	0	0	1	0	0	0	8168	1606	56	5	51	5	KIAA0196	8	126036907	Missense_Mutation	SNP	T	TCGA-BP-4789-01A-01D-1373-10		126036907	20327115	17	20775											
SLC3A2	6520	hgsc.bcm.edu;ucsc.edu	37	11	62650393	62650393	+	Silent	SNP	T	T	C	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	C	62650393	T	C	62650393	2	2	345	1	0	0	0	0	0	0	0	1	14640	1771	62	3		3	SLC3A2	11	62650393	Silent	SNP	T	TCGA-BP-4789-01A-01D-1373-10		62650393	72356123	18	20776											
LGALS12	85329	hgsc.bcm.edu	37	11	63276054	63276054	+	Silent	SNP	A	A	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	63276054	A	G	63276054	2	3	345	1	0	0	0	0	0	0	0	1	8746	291	11	3		3	LGALS12	11	63276054	Silent	SNP	A	TCGA-BP-4789-01A-01D-1373-10	625661	63276054	71730462	19	20777											
P4HA3	283208	hgsc.bcm.edu	37	11	73978334	73978334	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	73978334	G	A	73978334	4	1	345	1	0	0	0	0	0	1	0	0	11365	1386	48	2	44	2	P4HA3	11	73978334	Nonsense_Mutation	SNP	G	TCGA-BP-4789-01A-01D-1373-10	10702280	73978334	61028182	20	20778											
NAV3	89795	hgsc.bcm.edu	37	12	78400503	78400503	+	Silent	SNP	T	T	C	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	C	78400503	T	C	78400503	2	2	345	1	0	0	0	0	0	0	0	1	10192	1567	55	3		3	NAV3	12	78400503	Silent	SNP	T	TCGA-BP-4789-01A-01D-1373-10		78400503	55451392	21	20779											
HSP90B1	7184	hgsc.bcm.edu	37	12	104328066	104328066	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	104328066	G	A	104328066	5	1	345	1	0	0	0	0	0	0	1	0	7410	1159	40	1	762	1	HSP90B1	12	104328066	Splice_Site	SNP	G	TCGA-BP-4789-01A-01D-1373-10	25927563	104328066	29523829	22	20780											
HOMEZ	57594	hgsc.bcm.edu	37	14	23744912	23744912	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	23744912	C	G	23744912	3	3	345	1	0	0	0	0	1	0	0	0	7288	507	18	4	131	4	HOMEZ	14	23744912	Missense_Mutation	SNP	C	TCGA-BP-4789-01A-01D-1373-10		23744912	83604628	23	20781											
MTHFD1	4522	hgsc.bcm.edu	37	14	64886600	64886600	+	Silent	SNP	A	A	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	64886600	A	G	64886600	2	3	345	1	0	0	0	0	0	0	0	1	9934	40	2	3		3	MTHFD1	14	64886600	Silent	SNP	A	TCGA-BP-4789-01A-01D-1373-10	41141688	64886600	42462940	24	20782											
RIN3	79890	hgsc.bcm.edu	37	14	93118739	93118739	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	93118739	C	G	93118739	3	3	345	1	0	0	0	0	1	0	0	0	13386	796	28	4	1367	4	RIN3	14	93118739	Missense_Mutation	SNP	C	TCGA-BP-4789-01A-01D-1373-10	28232139	93118739	14230801	25	20783											
AP1G1	164	hgsc.bcm.edu	37	16	71803568	71803568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	71803568	T	G	71803568	3	3	345	1	0	0	0	0	1	0	0	0	732	1838	64	5	1953	5	AP1G1	16	71803568	Missense_Mutation	SNP	T	TCGA-BP-4789-01A-01D-1373-10		71803568	18551185	26	20784											
NLRP1	22861	hgsc.bcm.edu	37	17	5461895	5461895	+	Silent	SNP	C	C	A	rs61753137	bycluster;byfrequency;by1000genomes	TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	5461895	C	A	5461895	2	1	345	1	0	0	0	0	0	0	0	1	10478	697	25	4		4	NLRP1	17	5461895	Silent	SNP	C	TCGA-BP-4789-01A-01D-1373-10		5461895	75733315	27	20785											
MFAP4	4239	hgsc.bcm.edu	37	17	19289709	19289709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	19289709	C	A	19289709	3	1	345	1	0	0	0	0	1	0	0	0	9524	913	32	4	629	4	MFAP4	17	19289709	Missense_Mutation	SNP	C	TCGA-BP-4789-01A-01D-1373-10	13827814	19289709	61905501	28	20786											
CYTSB	0	hgsc.bcm.edu;ucsc.edu	37	17	20108593	20108593	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	T	20108593	G	T	20108593	4	4	345	1	0	0	0	0	0	1	0	0	4212	1291	45	4	1285	4	CYTSB	17	20108593	Nonsense_Mutation	SNP	G	TCGA-BP-4789-01A-01D-1373-10	818884	20108593	61086617	29	20787											
AP1M1	8907	hgsc.bcm.edu	37	19	16314301	16314301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	C	16314301	T	C	16314301	3	2	345	1	0	0	0	0	1	0	0	0	734	1696	59	3	80	3	AP1M1	19	16314301	Missense_Mutation	SNP	T	TCGA-BP-4789-01A-01D-1373-10		16314301	42814682	30	20788											
KLK13	26085	hgsc.bcm.edu	37	19	51561827	51561829	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	-	51561829	CGG	-	51561827	7	5	345	1	0	1	0	1	0	0	0	0	8408	652	23	0	228	0	KLK13	19	51561827	In_Frame_Del	DEL	CGG	TCGA-BP-4789-01A-01D-1373-10	35247526	51561827	7567156	31	20789											
MX1	4599	hgsc.bcm.edu	37	21	42824741	42824741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	T	42824741	C	T	42824741	3	4	345	1	0	0	0	0	1	0	0	0	10004	893	31	1	1749	1	MX1	21	42824741	Missense_Mutation	SNP	C	TCGA-BP-4789-01A-01D-1373-10		42824741	5305154	32	20790											
FIGF	2277	hgsc.bcm.edu;ucsc.edu	37	X	15376270	15376270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	A	15376270	G	A	15376270	3	1	345	1	0	0	0	0	1	0	0	0	5896	1145	40	1	737	1	FIGF	23	15376270	Missense_Mutation	SNP	G	TCGA-BP-4789-01A-01D-1373-10		15376270	139894290	33	20791											
CCNB3	85417	hgsc.bcm.edu	37	X	50090718	50090718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	50090718	A	G	50090718	3	3	345	1	0	0	0	0	1	0	0	0	2916	131	5	3	3938	3	CCNB3	23	50090718	Missense_Mutation	SNP	A	TCGA-BP-4789-01A-01D-1373-10	34714448	50090718	105179842	34	20792											
ZDHHC15	158866	hgsc.bcm.edu	37	X	74649805	74649805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4789-01A-01D-1373-10	TCGA-BP-4789-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6aac8b4c-11ab-41ec-81b1-cec7bc36fbd8	5230b040-78d1-4c29-be26-138b9c91eb48	G	74649805	T	G	74649805	3	3	345	1	0	0	0	0	1	0	0	0	17617	1850	64	5	577	5	ZDHHC15	23	74649805	Missense_Mutation	SNP	T	TCGA-BP-4789-01A-01D-1373-10	24559087	74649805	80620755	35	20793											
VHL	7428	hgsc.bcm.edu	37	3	10183817	10183817	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4789-01A-01W-1369-10	TCGA-BP-4789-11A-01W-1369-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	379e77cc-5bd5-4def-b4a5-84bcded28d18	5f6770ed-4d85-47ef-805f-14faf3c12c0b	T	10183817	C	T	10183817	4	4	346	1	0	0	0	0	0	1	0	0	17174	711	25	2	288	2	VHL	3	10183817	Nonsense_Mutation	SNP	C	TCGA-BP-4789-01A-01W-1369-10		10183817	187838613	1	20794											
SPTA1	6708	hgsc.bcm.edu	37	1	158585040	158585040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	C	158585040	T	C	158585040	3	2	347	1	0	0	0	0	1	0	0	0	15128	1435	50	3	525	3	SPTA1	1	158585040	Missense_Mutation	SNP	T	TCGA-BP-4790-01A-01D-1373-10		158585040	90665581	1	20795											
WDR26	80232	hgsc.bcm.edu;ucsc.edu	37	1	224586648	224586648	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	224586648	G	T	224586648	4	4	347	1	0	0	0	0	0	1	0	0	17295	1294	45	4	497	4	WDR26	1	224586648	Nonsense_Mutation	SNP	G	TCGA-BP-4790-01A-01D-1373-10	66001608	224586648	24663973	2	20796											
KIAA1310	0	hgsc.bcm.edu;ucsc.edu	37	2	97270575	97270575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	97270575	C	T	97270575	3	4	347	1	0	0	0	0	1	0	0	0	8229	826	29	2	701	2	KIAA1310	2	97270575	Missense_Mutation	SNP	C	TCGA-BP-4790-01A-01D-1373-10		97270575	145928798	3	20797											
IL18RAP	8807	hgsc.bcm.edu;ucsc.edu	37	2	103068343	103068343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	103068343	C	T	103068343	3	4	347	1	0	0	0	0	1	0	0	0	7655	739	26	2	1540	2	IL18RAP	2	103068343	Missense_Mutation	SNP	C	TCGA-BP-4790-01A-01D-1373-10	5797768	103068343	140131030	4	20798											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47142965	47142965	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	C	47142965	A	C	47142965	4	2	347	1	0	0	0	0	0	1	0	0	14144	340	12	5	2752	5	SETD2	3	47142965	Nonsense_Mutation	SNP	A	TCGA-BP-4790-01A-01D-1373-10		47142965	150879465	5	20799											
EVC	2121	hgsc.bcm.edu	37	4	5755604	5755604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	G	5755604	C	G	5755604	3	3	347	1	0	0	0	0	1	0	0	0	5287	479	17	4	1446	4	EVC	4	5755604	Missense_Mutation	SNP	C	TCGA-BP-4790-01A-01D-1373-10		5755604	185398672	6	20800											
KIAA0232	9778	hgsc.bcm.edu;ucsc.edu	37	4	6862718	6862718	+	Silent	SNP	C	C	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	6862718	C	T	6862718	2	4	347	1	0	0	0	0	0	0	0	1	8170	576	20	2		2	KIAA0232	4	6862718	Silent	SNP	C	TCGA-BP-4790-01A-01D-1373-10	1107114	6862718	184291558	7	20801											
RAPGEF6	51735	hgsc.bcm.edu	37	5	130928142	130928142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	A	130928142	C	A	130928142	3	1	347	1	0	0	0	0	1	0	0	0	13061	913	32	4	5176	4	RAPGEF6	5	130928142	Missense_Mutation	SNP	C	TCGA-BP-4790-01A-01D-1373-10		130928142	49987118	8	20802											
ZNF354C	30832	hgsc.bcm.edu	37	5	178506270	178506270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	178506270	G	T	178506270	3	4	347	1	0	0	0	0	1	0	0	0	17878	991	35	4	851	4	ZNF354C	5	178506270	Missense_Mutation	SNP	G	TCGA-BP-4790-01A-01D-1373-10	47578128	178506270	2408990	9	20803											
OGDH	4967	hgsc.bcm.edu;ucsc.edu	37	7	44747245	44747245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	44747245	C	T	44747245	3	4	347	1	0	0	0	0	1	0	0	0	10846	739	26	2	3116	2	OGDH	7	44747245	Missense_Mutation	SNP	C	TCGA-BP-4790-01A-01D-1373-10		44747245	114391418	10	20804											
GRM8	2918	hgsc.bcm.edu;ucsc.edu	37	7	126883202	126883202	+	Silent	SNP	G	G	A	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	A	126883202	G	A	126883202	2	1	347	1	0	0	0	0	0	0	0	1	6810	1335	47	2		2	GRM8	7	126883202	Silent	SNP	G	TCGA-BP-4790-01A-01D-1373-10	82135957	126883202	32255461	11	20805											
GADD45G	10912	hgsc.bcm.edu	37	9	92220937	92220937	+	Silent	SNP	T	T	C	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	C	92220937	T	C	92220937	2	2	347	1	0	0	0	0	0	0	0	1	6190	1838	64	3		3	GADD45G	9	92220937	Silent	SNP	T	TCGA-BP-4790-01A-01D-1373-10		92220937	48992494	12	20806											
PGBD3	267004	hgsc.bcm.edu	37	10	50725062	50725062	+	Silent	SNP	A	A	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	50725062	A	T	50725062	2	4	347	1	0	0	0	0	0	0	0	1	11789	407	15	5		5	PGBD3	10	50725062	Silent	SNP	A	TCGA-BP-4790-01A-01D-1373-10		50725062	84809685	13	20807											
ZMYND17	0	hgsc.bcm.edu	37	10	75186103	75186103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	G	75186103	A	G	75186103	3	3	347	1	0	0	0	0	1	0	0	0	17721	217	8	3	859	3	ZMYND17	10	75186103	Missense_Mutation	SNP	A	TCGA-BP-4790-01A-01D-1373-10	24461041	75186103	60348644	14	20808											
OR51V1	283111	hgsc.bcm.edu	37	11	5221519	5221519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	5221519	G	T	5221519	3	4	347	1	0	0	0	0	1	0	0	0	11114	1174	41	4	556	4	OR51V1	11	5221519	Missense_Mutation	SNP	G	TCGA-BP-4790-01A-01D-1373-10		5221519	129784997	15	20809											
PRDM10	56980	hgsc.bcm.edu	37	11	129782003	129782003	+	Missense_Mutation	SNP	C	C	G	rs141397814	byfrequency	TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	G	129782003	C	G	129782003	3	3	347	1	0	0	0	0	1	0	0	0	12461	768	27	4	527	4	PRDM10	11	129782003	Missense_Mutation	SNP	C	TCGA-BP-4790-01A-01D-1373-10	124560484	129782003	5224513	16	20810											
LDHB	3945	hgsc.bcm.edu;ucsc.edu	37	12	21791314	21791314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	A	21791314	T	A	21791314	3	1	347	1	0	0	0	0	1	0	0	0	8708	1609	56	5	330	5	LDHB	12	21791314	Missense_Mutation	SNP	T	TCGA-BP-4790-01A-01D-1373-10		21791314	112060581	17	20811											
FREM2	341640	hgsc.bcm.edu;ucsc.edu	37	13	39265273	39265273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	G	39265273	T	G	39265273	3	3	347	1	0	0	0	0	1	0	0	0	6052	1829	64	5	3794	5	FREM2	13	39265273	Missense_Mutation	SNP	T	TCGA-BP-4790-01A-01D-1373-10		39265273	75904605	18	20812											
CIRH1A	84916	hgsc.bcm.edu	37	16	69184578	69184578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	69184578	G	T	69184578	3	4	347	1	0	0	0	0	1	0	0	0	3436	1377	48	4	899	4	CIRH1A	16	69184578	Missense_Mutation	SNP	G	TCGA-BP-4790-01A-01D-1373-10		69184578	21170175	19	20813											
CTRB2	440387	hgsc.bcm.edu	37	16	75241033	75241033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	G	75241033	A	G	75241033	3	3	347	1	0	0	0	0	1	0	0	0	4028	14	1	3	812	3	CTRB2	16	75241033	Missense_Mutation	SNP	A	TCGA-BP-4790-01A-01D-1373-10	6056455	75241033	15113720	20	20814											
SMURF2	64750	hgsc.bcm.edu;ucsc.edu	37	17	62542419	62542419	+	Silent	SNP	A	A	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	62542419	A	T	62542419	2	4	347	1	0	0	0	0	0	0	0	1	14833	126	5	5		5	SMURF2	17	62542419	Silent	SNP	A	TCGA-BP-4790-01A-01D-1373-10		62542419	18652791	21	20815											
KCNJ2	3759	hgsc.bcm.edu;ucsc.edu	37	17	68172170	68172170	+	Silent	SNP	C	C	G	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	G	68172170	C	G	68172170	2	3	347	1	0	0	0	0	0	0	0	1	8058	900	32	4		4	KCNJ2	17	68172170	Silent	SNP	C	TCGA-BP-4790-01A-01D-1373-10	5629751	68172170	13023040	22	20816											
PGS1	9489	hgsc.bcm.edu;ucsc.edu	37	17	76388642	76388642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	A	76388642	G	A	76388642	3	1	347	1	0	0	0	0	1	0	0	0	11815	1145	40	1	235	1	PGS1	17	76388642	Missense_Mutation	SNP	G	TCGA-BP-4790-01A-01D-1373-10	8216472	76388642	4806568	23	20817											
SS18	6760	hgsc.bcm.edu	37	18	23637608	23637608	+	Silent	SNP	T	T	A	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	A	23637608	T	A	23637608	2	1	347	1	0	0	0	0	0	0	0	1	15187	1509	53	5		5	SS18	18	23637608	Silent	SNP	T	TCGA-BP-4790-01A-01D-1373-10		23637608	54439640	24	20818											
CDH19	28513	hgsc.bcm.edu;ucsc.edu	37	18	64172432	64172432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	64172432	C	T	64172432	3	4	347	1	0	0	0	0	1	0	0	0	3106	623	22	2	386	2	CDH19	18	64172432	Missense_Mutation	SNP	C	TCGA-BP-4790-01A-01D-1373-10	40534824	64172432	13904816	25	20819											
MAP3K10	4294	hgsc.bcm.edu	37	19	40698258	40698258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	40698258	G	T	40698258	3	4	347	1	0	0	0	0	1	0	0	0	9251	1232	43	4	322	4	MAP3K10	19	40698258	Missense_Mutation	SNP	G	TCGA-BP-4790-01A-01D-1373-10		40698258	18430725	26	20820											
CNFN	84518	hgsc.bcm.edu	37	19	42893091	42893091	+	Silent	SNP	G	G	A	rs139046031	bycluster;byfrequency;by1000genomes	TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	A	42893091	G	A	42893091	2	1	347	1	0	0	0	0	0	0	0	1	3597	1136	40	1		1	CNFN	19	42893091	Silent	SNP	G	TCGA-BP-4790-01A-01D-1373-10	2194833	42893091	16235892	27	20821											
DMD	1756	hgsc.bcm.edu;ucsc.edu	37	X	31947776	31947777	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	-	31947777	TA	-	31947776	7	5	347	1	0	1	0	1	0	0	0	0	4582	1744	61	0	4488	0	DMD	23	31947776	Frame_Shift_Del	DEL	TA	TCGA-BP-4790-01A-01D-1373-10		31947776	123322784	28	20822											
ZNF275	10838	hgsc.bcm.edu	37	X	152612540	152612540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4790-01A-01D-1373-10	TCGA-BP-4790-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0221c6f-dbe6-4a2c-849d-0f554e107d5d	697e3e79-1b90-497a-b917-0ed7883f7ac6	T	152612540	G	T	152612540	3	4	347	1	0	0	0	0	1	0	0	0	17822	1058	37	4	407	4	ZNF275	23	152612540	Missense_Mutation	SNP	G	TCGA-BP-4790-01A-01D-1373-10	120664764	152612540	2658020	29	20823											
CLSTN1	22883	broad.mit.edu	37	1	9804590	9804590	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	C	9804590	T	C	9804590	3	2	348	1	0	0	0	0	1	0	0	0	3563	1725	60	3	1896	3	CLSTN1	1	9804590	Missense_Mutation	SNP	T	TCGA-BP-4795-01A-02D-1421-08		9804590	239446031	1	20824											
CYP4B1	1580	broad.mit.edu	37	1	47278213	47278213	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	47278213	G	A	47278213	3	1	348	1	0	0	0	0	1	0	0	0	4187	1087	38	1	427	1	CYP4B1	1	47278213	Missense_Mutation	SNP	G	TCGA-BP-4795-01A-02D-1421-08	37473623	47278213	201972408	2	20825											
ADAR	103	broad.mit.edu	37	1	154561068	154561068	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	154561068	C	A	154561068	3	1	348	1	0	0	0	0	1	0	0	0	281	796	28	4	860	4	ADAR	1	154561068	Missense_Mutation	SNP	C	TCGA-BP-4795-01A-02D-1421-08	107282855	154561068	94689553	3	20826											
KCNN3	3782	broad.mit.edu	37	1	154842012	154842012	+	Silent	SNP	G	G	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	154842012	G	A	154842012	2	1	348	1	0	0	0	0	0	0	0	1	8087	1335	47	2		2	KCNN3	1	154842012	Silent	SNP	G	TCGA-BP-4795-01A-02D-1421-08	280944	154842012	94408609	4	20827											
OPTC	26254	broad.mit.edu	37	1	203468977	203468977	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	G	203468977	A	G	203468977	3	3	348	1	0	0	0	0	1	0	0	0	10895	179	7	3	744	3	OPTC	1	203468977	Missense_Mutation	SNP	A	TCGA-BP-4795-01A-02D-1421-08	48626965	203468977	45781644	5	20828											
CPSF3	51692	broad.mit.edu	37	2	9572771	9572771	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	9572771	A	T	9572771	3	4	348	1	0	0	0	0	1	0	0	0	3828	159	6	5	491	5	CPSF3	2	9572771	Missense_Mutation	SNP	A	TCGA-BP-4795-01A-02D-1421-08		9572771	233626602	6	20829											
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48897082	48897082	+	Silent	SNP	T	T	C			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	C	48897082	T	C	48897082	2	2	348	1	0	0	0	0	0	0	0	1	15329	1635	57	3		3	STON1-GTF2A1L	2	48897082	Silent	SNP	T	TCGA-BP-4795-01A-02D-1421-08	39324311	48897082	194302291	7	20830											
TEKT4	150483	broad.mit.edu	37	2	95539321	95539321	+	Silent	SNP	A	A	G			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	G	95539321	A	G	95539321	2	3	348	1	0	0	0	0	0	0	0	1	15767	175	7	3		3	TEKT4	2	95539321	Silent	SNP	A	TCGA-BP-4795-01A-02D-1421-08	46642239	95539321	147660052	8	20831											
CCDC74A	90557	broad.mit.edu	37	2	132288265	132288265	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	132288265	G	T	132288265	4	4	348	1	0	0	0	0	0	1	0	0	2849	1175	41	4	419	4	CCDC74A	2	132288265	Nonsense_Mutation	SNP	G	TCGA-BP-4795-01A-02D-1421-08	36748944	132288265	110911108	9	20832											
KCNH7	90134	broad.mit.edu	37	2	163256910	163256910	+	Silent	SNP	A	A	G			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	G	163256910	A	G	163256910	2	3	348	1	0	0	0	0	0	0	0	1	8044	273	10	3		3	KCNH7	2	163256910	Silent	SNP	A	TCGA-BP-4795-01A-02D-1421-08	30968645	163256910	79942463	10	20833											
SRGAP3	9901	broad.mit.edu	37	3	9106174	9106174	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	C	9106174	T	C	9106174	3	2	348	1	0	0	0	0	1	0	0	0	15159	1493	52	3	2828	3	SRGAP3	3	9106174	Missense_Mutation	SNP	T	TCGA-BP-4795-01A-02D-1421-08		9106174	188916256	11	20834											
IL17RE	132014	broad.mit.edu	37	3	9956185	9956185	+	Silent	SNP	A	A	G			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	G	9956185	A	G	9956185	2	3	348	1	0	0	0	0	0	0	0	1	7650	319	11	3		3	IL17RE	3	9956185	Silent	SNP	A	TCGA-BP-4795-01A-02D-1421-08	850011	9956185	188066245	12	20835											
SLC4A7	9497	broad.mit.edu	37	3	27446453	27446453	+	Splice_Site	SNP	C	C	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	27446453	C	T	27446453	5	4	348	1	0	0	0	0	0	0	1	0	14671	579	20	2	1776	2	SLC4A7	3	27446453	Splice_Site	SNP	C	TCGA-BP-4795-01A-02D-1421-08	17490268	27446453	170575977	13	20836											
MBOAT1	154141	broad.mit.edu	37	6	20212418	20212418	+	Silent	SNP	G	G	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	20212418	G	T	20212418	2	4	348	1	0	0	0	0	0	0	0	1	9363	958	34	4		4	MBOAT1	6	20212418	Silent	SNP	G	TCGA-BP-4795-01A-02D-1421-08		20212418	150902649	14	20837											
AKAP12	9590	broad.mit.edu	37	6	151672019	151672019	+	Silent	SNP	A	A	G			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	G	151672019	A	G	151672019	2	3	348	1	0	0	0	0	0	0	0	1	448	175	7	3		3	AKAP12	6	151672019	Silent	SNP	A	TCGA-BP-4795-01A-02D-1421-08	131459601	151672019	19443048	15	20838											
CREB5	9586	broad.mit.edu	37	7	28848894	28848894	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	28848894	G	A	28848894	3	1	348	1	0	0	0	0	1	0	0	0	3862	1174	41	2	1202	2	CREB5	7	28848894	Missense_Mutation	SNP	G	TCGA-BP-4795-01A-02D-1421-08		28848894	130289769	16	20839											
CCDC129	223075	broad.mit.edu	37	7	31617737	31617737	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	C	31617737	T	C	31617737	3	2	348	1	0	0	0	0	1	0	0	0	2766	1609	56	3	885	3	CCDC129	7	31617737	Missense_Mutation	SNP	T	TCGA-BP-4795-01A-02D-1421-08	2768843	31617737	127520926	17	20840											
GRM8	2918	broad.mit.edu	37	7	126544081	126544081	+	Missense_Mutation	SNP	T	T	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	126544081	T	A	126544081	3	1	348	1	0	0	0	0	1	0	0	0	6810	1606	56	5	1841	5	GRM8	7	126544081	Missense_Mutation	SNP	T	TCGA-BP-4795-01A-02D-1421-08	94926344	126544081	32594582	18	20841											
SLC13A4	26266	broad.mit.edu	37	7	135390994	135390994	+	Silent	SNP	G	G	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	135390994	G	A	135390994	2	1	348	1	0	0	0	0	0	0	0	1	14407	1368	48	2		2	SLC13A4	7	135390994	Silent	SNP	G	TCGA-BP-4795-01A-02D-1421-08	8846913	135390994	23747669	19	20842											
MELK	9833	broad.mit.edu	37	9	36607602	36607602	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	C	36607602	T	C	36607602	3	2	348	1	0	0	0	0	1	0	0	0	9477	1406	49	3	624	3	MELK	9	36607602	Missense_Mutation	SNP	T	TCGA-BP-4795-01A-02D-1421-08		36607602	104605829	20	20843											
PDGFD	80310	broad.mit.edu	37	11	104034545	104034545	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	104034545	G	T	104034545	3	4	348	1	0	0	0	0	1	0	0	0	11667	1252	44	4	1029	4	PDGFD	11	104034545	Missense_Mutation	SNP	G	TCGA-BP-4795-01A-02D-1421-08		104034545	30971971	21	20844											
GPRC5D	55507	broad.mit.edu	37	12	13103070	13103070	+	Silent	SNP	C	C	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	13103070	C	T	13103070	2	4	348	1	0	0	0	0	0	0	0	1	6734	796	28	2		2	GPRC5D	12	13103070	Silent	SNP	C	TCGA-BP-4795-01A-02D-1421-08		13103070	120748825	22	20845											
SPIC	121599	broad.mit.edu	37	12	101880233	101880233	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	101880233	C	A	101880233	4	1	348	1	0	0	0	0	0	1	0	0	15063	838	29	4	443	4	SPIC	12	101880233	Nonsense_Mutation	SNP	C	TCGA-BP-4795-01A-02D-1421-08	88777163	101880233	31971662	23	20846											
EFNB2	1948	broad.mit.edu	37	13	107164902	107164902	+	Silent	SNP	C	C	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	107164902	C	T	107164902	2	4	348	1	0	0	0	0	0	0	0	1	4958	912	32	2		2	EFNB2	13	107164902	Silent	SNP	C	TCGA-BP-4795-01A-02D-1421-08		107164902	8004976	24	20847											
DCAF11	80344	broad.mit.edu	37	14	24590630	24590630	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	24590630	G	A	24590630	3	1	348	1	0	0	0	0	1	0	0	0	4264	1117	39	1	1349	1	DCAF11	14	24590630	Missense_Mutation	SNP	G	TCGA-BP-4795-01A-02D-1421-08		24590630	82758910	25	20848											
AKAP6	9472	broad.mit.edu	37	14	33015692	33015692	+	Silent	SNP	A	A	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	33015692	A	T	33015692	2	4	348	1	0	0	0	0	0	0	0	1	455	117	5	5		5	AKAP6	14	33015692	Silent	SNP	A	TCGA-BP-4795-01A-02D-1421-08	8425062	33015692	74333848	26	20849											
CTAGE5	4253	broad.mit.edu	37	14	39819379	39819379	+	Missense_Mutation	SNP	T	T	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	39819379	T	A	39819379	3	1	348	1	0	0	0	0	1	0	0	0	3996	1783	62	5	2451	5	CTAGE5	14	39819379	Missense_Mutation	SNP	T	TCGA-BP-4795-01A-02D-1421-08	6803687	39819379	67530161	27	20850											
EML5	161436	broad.mit.edu	37	14	89153576	89153576	+	Silent	SNP	C	C	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	89153576	C	T	89153576	2	4	348	1	0	0	0	0	0	0	0	1	5102	593	21	2		2	EML5	14	89153576	Silent	SNP	C	TCGA-BP-4795-01A-02D-1421-08	49334197	89153576	18195964	28	20851											
LRRC49	54839	broad.mit.edu	37	15	71276512	71276512	+	Missense_Mutation	SNP	A	A	C			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	C	71276512	A	C	71276512	3	2	348	1	0	0	0	0	1	0	0	0	9013	101	4	5	1127	5	LRRC49	15	71276512	Missense_Mutation	SNP	A	TCGA-BP-4795-01A-02D-1421-08		71276512	31254880	29	20852											
IDH2	3418	broad.mit.edu	37	15	90631628	90631628	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	90631628	G	A	90631628	3	1	348	1	0	0	0	0	1	0	0	0	7502	1319	46	2	745	2	IDH2	15	90631628	Missense_Mutation	SNP	G	TCGA-BP-4795-01A-02D-1421-08	19355116	90631628	11899764	30	20853											
HSF4	3299	broad.mit.edu	37	16	67203204	67203204	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	67203204	G	A	67203204	3	1	348	1	0	0	0	0	1	0	0	0	7405	1116	39	1	1337	1	HSF4	16	67203204	Missense_Mutation	SNP	G	TCGA-BP-4795-01A-02D-1421-08		67203204	23151549	31	20854											
RAP1GAP2	23108	broad.mit.edu	37	17	2901602	2901602	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	C	2901602	T	C	2901602	3	2	348	1	0	0	0	0	1	0	0	0	13051	1551	54	3	1186	3	RAP1GAP2	17	2901602	Missense_Mutation	SNP	T	TCGA-BP-4795-01A-02D-1421-08		2901602	78293608	32	20855											
NAGLU	4669	broad.mit.edu	37	17	40690727	40690727	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	40690727	C	T	40690727	3	4	348	1	0	0	0	0	1	0	0	0	10150	623	22	2	732	2	NAGLU	17	40690727	Missense_Mutation	SNP	C	TCGA-BP-4795-01A-02D-1421-08	37789125	40690727	40504483	33	20856											
CELF4	56853	broad.mit.edu	37	18	34846536	34846536	+	Silent	SNP	G	G	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	34846536	G	T	34846536	2	4	348	1	0	0	0	0	0	0	0	1	3220	1219	43	4		4	CELF4	18	34846536	Silent	SNP	G	TCGA-BP-4795-01A-02D-1421-08		34846536	43230712	34	20857											
KIAA1468	57614	broad.mit.edu	37	18	59895745	59895745	+	Silent	SNP	A	A	G			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	G	59895745	A	G	59895745	2	3	348	1	0	0	0	0	0	0	0	1	8243	117	5	3		3	KIAA1468	18	59895745	Silent	SNP	A	TCGA-BP-4795-01A-02D-1421-08	25049209	59895745	18181503	35	20858											
OCEL1	79629	broad.mit.edu	37	19	17337970	17337970	+	Silent	SNP	G	G	A			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	A	17337970	G	A	17337970	2	1	348	1	0	0	0	0	0	0	0	1	10823	1190	42	2		2	OCEL1	19	17337970	Silent	SNP	G	TCGA-BP-4795-01A-02D-1421-08		17337970	41791013	36	20859											
PTPRH	5794	broad.mit.edu	37	19	55716831	55716831	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	T	55716831	C	T	55716831	3	4	348	1	0	0	0	0	1	0	0	0	12816	739	26	2	2933	2	PTPRH	19	55716831	Missense_Mutation	SNP	C	TCGA-BP-4795-01A-02D-1421-08	38378861	55716831	3412152	37	20860											
BMP2	650	broad.mit.edu	37	20	6759595	6759595	+	Missense_Mutation	SNP	C	C	G			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	G	6759595	C	G	6759595	3	3	348	1	0	0	0	0	1	0	0	0	1459	564	20	4	1056	4	BMP2	20	6759595	Missense_Mutation	SNP	C	TCGA-BP-4795-01A-02D-1421-08		6759595	56265925	38	20861											
UTP14A	10813	broad.mit.edu	37	X	129058772	129058772	+	Splice_Site	SNP	T	T	G			TCGA-BP-4795-01A-02D-1421-08	TCGA-BP-4795-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b3e4e1aa-108b-46d9-9724-6e9b4adf7129	feb7a7a2-122d-4343-baef-4ac89f681cba	G	129058772	T	G	129058772	5	3	348	1	0	0	0	0	0	0	1	0	17107	1507	52	5	1396	5	UTP14A	23	129058772	Splice_Site	SNP	T	TCGA-BP-4795-01A-02D-1421-08		129058772	26211788	39	20862											
PHF13	148479	hgsc.bcm.edu;ucsc.edu	37	1	6676887	6676887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	T	6676887	C	T	6676887	3	4	349	1	0	0	0	0	1	0	0	0	11831	739	26	2	116	2	PHF13	1	6676887	Missense_Mutation	SNP	C	TCGA-BP-4797-01A-01D-1373-10		6676887	242573734	1	20863											
MACF1	23499	hgsc.bcm.edu;ucsc.edu	37	1	39799692	39799692	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	G	39799692	T	G	39799692	3	3	349	1	0	0	0	0	1	0	0	0	9151	1838	64	5	7523	5	MACF1	1	39799692	Missense_Mutation	SNP	T	TCGA-BP-4797-01A-01D-1373-10	33122805	39799692	209450929	2	20864											
KANK4	163782	hgsc.bcm.edu	37	1	62740019	62740019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	G	62740019	A	G	62740019	3	3	349	1	0	0	0	0	1	0	0	0	7986	304	11	3	2262	3	KANK4	1	62740019	Missense_Mutation	SNP	A	TCGA-BP-4797-01A-01D-1373-10	22940327	62740019	186510602	3	20865											
BAT2L2	0	hgsc.bcm.edu;ucsc.edu	37	1	171505374	171505374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	T	171505374	G	T	171505374	3	4	349	1	0	0	0	0	1	0	0	0	1321	1290	45	4	2294	4	BAT2L2	1	171505374	Missense_Mutation	SNP	G	TCGA-BP-4797-01A-01D-1373-10	108765355	171505374	77745247	4	20866											
GREB1	9687	hgsc.bcm.edu;ucsc.edu	37	2	11755345	11755345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	G	11755345	A	G	11755345	3	3	349	1	0	0	0	0	1	0	0	0	6767	43	2	3	3433	3	GREB1	2	11755345	Missense_Mutation	SNP	A	TCGA-BP-4797-01A-01D-1373-10		11755345	231444028	5	20867											
FAM98A	25940	hgsc.bcm.edu;ucsc.edu	37	2	33809869	33809869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	G	33809869	C	G	33809869	3	3	349	1	0	0	0	0	1	0	0	0	5663	603	21	4	29	4	FAM98A	2	33809869	Missense_Mutation	SNP	C	TCGA-BP-4797-01A-01D-1373-10	22054524	33809869	209389504	6	20868											
NDUFS1	4719	hgsc.bcm.edu;ucsc.edu	37	2	206994925	206994925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	T	206994925	G	T	206994925	3	4	349	1	0	0	0	0	1	0	0	0	10298	1000	35	4	608	4	NDUFS1	2	206994925	Missense_Mutation	SNP	G	TCGA-BP-4797-01A-01D-1373-10	173185056	206994925	36204448	7	20869											
SLC2A9	56606	hgsc.bcm.edu	37	4	9922170	9922170	+	Missense_Mutation	SNP	C	C	G	rs73225891	bycluster;byfrequency;by1000genomes	TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	G	9922170	C	G	9922170	3	3	349	1	0	0	0	0	1	0	0	0	14565	913	32	4	805	4	SLC2A9	4	9922170	Missense_Mutation	SNP	C	TCGA-BP-4797-01A-01D-1373-10		9922170	181232106	8	20870											
NFKB1	4790	hgsc.bcm.edu	37	4	103528456	103528456	+	Missense_Mutation	SNP	G	G	A	rs111293796		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	A	103528456	G	A	103528456	3	1	349	1	0	0	0	0	1	0	0	0	10382	1203	42	2	2170	2	NFKB1	4	103528456	Missense_Mutation	SNP	G	TCGA-BP-4797-01A-01D-1373-10	93606286	103528456	87625820	9	20871											
ADAD1	132612	hgsc.bcm.edu;ucsc.edu	37	4	123332503	123332503	+	Silent	SNP	C	C	T	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	T	123332503	C	T	123332503	2	4	349	1	0	0	0	0	0	0	0	1	231	489	17	2		2	ADAD1	4	123332503	Silent	SNP	C	TCGA-BP-4797-01A-01D-1373-10	19804047	123332503	67821773	10	20872											
JARID2	3720	hgsc.bcm.edu;ucsc.edu	37	6	15513604	15513604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	A	15513604	C	A	15513604	3	1	349	1	0	0	0	0	1	0	0	0	7952	536	19	4	3463	4	JARID2	6	15513604	Missense_Mutation	SNP	C	TCGA-BP-4797-01A-01D-1373-10		15513604	155601463	11	20873											
C14orf174	0	hgsc.bcm.edu	37	14	77844691	77844691	+	Silent	SNP	A	A	G	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	G	77844691	A	G	77844691	2	3	349	1	0	0	0	0	0	0	0	1	1761	175	7	3		3	C14orf174	14	77844691	Silent	SNP	A	TCGA-BP-4797-01A-01D-1373-10		77844691	29504849	12	20874											
PAK6	56924	hgsc.bcm.edu	37	15	40568129	40568129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	C	40568129	T	C	40568129	3	2	349	1	0	0	0	0	1	0	0	0	11411	1681	58	3	1910	3	PAK6	15	40568129	Missense_Mutation	SNP	T	TCGA-BP-4797-01A-01D-1373-10		40568129	61963263	13	20875											
ZNF844	284391	hgsc.bcm.edu;ucsc.edu	37	19	12186207	12186207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	G	12186207	C	G	12186207	3	3	349	1	0	0	0	0	1	0	0	0	18202	478	17	4	286	4	ZNF844	19	12186207	Missense_Mutation	SNP	C	TCGA-BP-4797-01A-01D-1373-10		12186207	46942776	14	20876											
AKT2	208	hgsc.bcm.edu	37	19	40741045	40741045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	A	40741045	G	A	40741045	3	1	349	1	0	0	0	0	1	0	0	0	480	1261	44	2	180	2	AKT2	19	40741045	Missense_Mutation	SNP	G	TCGA-BP-4797-01A-01D-1373-10	28554838	40741045	18387938	15	20877											
ANKRD5	0	hgsc.bcm.edu	37	20	10030475	10030475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	T	10030475	A	T	10030475	3	4	349	1	0	0	0	0	1	0	0	0	676	333	12	5	1276	5	ANKRD5	20	10030475	Missense_Mutation	SNP	A	TCGA-BP-4797-01A-01D-1373-10		10030475	52995045	16	20878											
ASMTL	8623	hgsc.bcm.edu	37	X	1537002	1537002	+	Silent	SNP	C	C	G	rs71298853	alternate_allele	TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	G	1537002	C	G	1537002	2	3	349	1	0	0	0	0	0	0	0	1	1046	639	23	4		4	ASMTL	23	1537002	Silent	SNP	C	TCGA-BP-4797-01A-01D-1373-10		1537002	153733558	17	20879											
GATA1	2623	hgsc.bcm.edu	37	X	48649553	48649553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	A	48649553	G	A	48649553	3	1	349	1	0	0	0	0	1	0	0	0	6260	943	33	2	39	2	GATA1	23	48649553	Missense_Mutation	SNP	G	TCGA-BP-4797-01A-01D-1373-10	47112551	48649553	106621007	18	20880											
MAGED1	9500	hgsc.bcm.edu	37	X	51638328	51638328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	T	51638328	G	T	51638328	3	4	349	1	0	0	0	0	1	0	0	0	9190	1020	36	4	403	4	MAGED1	23	51638328	Missense_Mutation	SNP	G	TCGA-BP-4797-01A-01D-1373-10	2988775	51638328	103632232	19	20881											
TRO	7216	hgsc.bcm.edu	37	X	54953023	54953023	+	Silent	SNP	C	C	A	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	A	54953023	C	A	54953023	2	1	349	1	0	0	0	0	0	0	0	1	16586	903	32	4		4	TRO	23	54953023	Silent	SNP	C	TCGA-BP-4797-01A-01D-1373-10	3314695	54953023	100317537	20	20882											
MCTS1	28985	hgsc.bcm.edu	37	X	119739390	119739390	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4797-01A-01D-1373-10	TCGA-BP-4797-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9b7e1bde-7d7f-4fa7-8e87-e1a555c6ebad	5467d704-d6d5-410a-b8b3-15ee3afe92e9	T	119739390	A	T	119739390	3	4	349	1	0	0	0	0	1	0	0	0	9409	14	1	5	164	5	MCTS1	23	119739390	Missense_Mutation	SNP	A	TCGA-BP-4797-01A-01D-1373-10	64786367	119739390	35531170	21	20883											
EDEM3	80267	hgsc.bcm.edu;ucsc.edu	37	1	184663341	184663341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	T	184663341	G	T	184663341	3	4	350	1	0	0	0	0	1	0	0	0	4915	1252	44	4	147	4	EDEM3	1	184663341	Missense_Mutation	SNP	G	TCGA-BP-4798-01A-01D-1373-10		184663341	64587280	1	20884											
IARS2	55699	hgsc.bcm.edu;ucsc.edu	37	1	220316384	220316384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	T	220316384	G	T	220316384	3	4	350	1	0	0	0	0	1	0	0	0	7481	942	33	4	2741	4	IARS2	1	220316384	Missense_Mutation	SNP	G	TCGA-BP-4798-01A-01D-1373-10	35653043	220316384	28934237	2	20885											
BAP1	8314	ucsc.edu	37	3	52439312	52439312	+	Splice_Site	SNP	T	T	C	rs112194987		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	C	52439312	T	C	52439312	5	2	350	1	0	0	0	0	0	0	1	0	1311	1594	55	3	1287	3	BAP1	3	52439312	Splice_Site	SNP	T	TCGA-BP-4798-01A-01D-1373-10		52439312	145583118	3	20886											
ABCC5	10057	hgsc.bcm.edu	37	3	183655834	183655834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	T	183655834	C	T	183655834	3	4	350	1	0	0	0	0	1	0	0	0	56	623	22	2	624	2	ABCC5	3	183655834	Missense_Mutation	SNP	C	TCGA-BP-4798-01A-01D-1373-10	131216522	183655834	14366596	4	20887											
PDGFRA	5156	hgsc.bcm.edu	37	4	55141031	55141031	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	A	55141031	G	A	55141031	4	1	350	1	0	0	0	0	0	1	0	0	11668	1183	41	2	1719	2	PDGFRA	4	55141031	Nonsense_Mutation	SNP	G	TCGA-BP-4798-01A-01D-1373-10		55141031	136013245	5	20888											
GCNT2	2651	hgsc.bcm.edu;ucsc.edu	37	6	10557023	10557023	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	G	10557023	T	G	10557023	3	3	350	1	0	0	0	0	1	0	0	0	6308	1580	55	5	1298	5	GCNT2	6	10557023	Missense_Mutation	SNP	T	TCGA-BP-4798-01A-01D-1373-10		10557023	160558044	6	20889											
NMBR	4829	hgsc.bcm.edu;ucsc.edu	37	6	142399949	142399949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	T	142399949	C	T	142399949	3	4	350	1	0	0	0	0	1	0	0	0	10494	536	19	1	666	1	NMBR	6	142399949	Missense_Mutation	SNP	C	TCGA-BP-4798-01A-01D-1373-10	131842926	142399949	28715118	7	20890											
PPIL4	85313	hgsc.bcm.edu	37	6	149826604	149826604	+	Silent	SNP	T	T	C	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	C	149826604	T	C	149826604	2	2	350	1	0	0	0	0	0	0	0	1	12339	1490	52	3		3	PPIL4	6	149826604	Silent	SNP	T	TCGA-BP-4798-01A-01D-1373-10	7426655	149826604	21288463	8	20891											
ZC3HAV1	56829	hgsc.bcm.edu	37	7	138732448	138732448	+	Silent	SNP	A	A	G	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	G	138732448	A	G	138732448	2	3	350	1	0	0	0	0	0	0	0	1	17587	157	6	3		3	ZC3HAV1	7	138732448	Silent	SNP	A	TCGA-BP-4798-01A-01D-1373-10		138732448	20406215	9	20892											
TMEM2	23670	hgsc.bcm.edu	37	9	74360416	74360416	+	Silent	SNP	A	A	G	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	G	74360416	A	G	74360416	2	3	350	1	0	0	0	0	0	0	0	1	16133	146	6	3		3	TMEM2	9	74360416	Silent	SNP	A	TCGA-BP-4798-01A-01D-1373-10		74360416	66853015	10	20893											
KIAA1529	0	hgsc.bcm.edu	37	9	100079448	100079448	+	Silent	SNP	C	C	T	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	T	100079448	C	T	100079448	2	4	350	1	0	0	0	0	0	0	0	1	8247	784	28	2		2	KIAA1529	9	100079448	Silent	SNP	C	TCGA-BP-4798-01A-01D-1373-10	25719032	100079448	41133983	11	20894											
CAPN5	726	hgsc.bcm.edu	37	11	76825307	76825307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	T	76825307	G	T	76825307	3	4	350	1	0	0	0	0	1	0	0	0	2631	1203	42	4	540	4	CAPN5	11	76825307	Missense_Mutation	SNP	G	TCGA-BP-4798-01A-01D-1373-10		76825307	58181209	12	20895											
PDE3A	5139	hgsc.bcm.edu;ucsc.edu	37	12	20803458	20803458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	C	20803458	A	C	20803458	3	2	350	1	0	0	0	0	1	0	0	0	11644	333	12	5	2903	5	PDE3A	12	20803458	Missense_Mutation	SNP	A	TCGA-BP-4798-01A-01D-1373-10		20803458	113048437	13	20896											
SHCBP1	79801	hgsc.bcm.edu;ucsc.edu	37	16	46651587	46651587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	A	46651587	G	A	46651587	3	1	350	1	0	0	0	0	1	0	0	0	14287	1086	38	1	1716	1	SHCBP1	16	46651587	Missense_Mutation	SNP	G	TCGA-BP-4798-01A-01D-1373-10		46651587	43703166	14	20897											
NLRP1	22861	hgsc.bcm.edu	37	17	5462053	5462053	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	A	5462053	T	A	5462053	4	1	350	1	0	0	0	0	0	1	0	0	10478	1850	64	5	2589	5	NLRP1	17	5462053	Nonsense_Mutation	SNP	T	TCGA-BP-4798-01A-01D-1373-10		5462053	75733157	15	20898											
TP53	7157	hgsc.bcm.edu;ucsc.edu	37	17	7577581	7577581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	G	7577581	A	G	7577581	3	3	350	1	0	0	0	0	1	0	0	0	16393	420	15	3	590	3	TP53	17	7577581	Missense_Mutation	SNP	A	TCGA-BP-4798-01A-01D-1373-10	2115528	7577581	73617629	16	20899											
TOM1L2	146691	hgsc.bcm.edu;ucsc.edu	37	17	17810782	17810782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	G	17810782	A	G	17810782	3	3	350	1	0	0	0	0	1	0	0	0	16365	333	12	3	1463	3	TOM1L2	17	17810782	Missense_Mutation	SNP	A	TCGA-BP-4798-01A-01D-1373-10	10233201	17810782	63384428	17	20900											
PRPSAP2	5636	hgsc.bcm.edu	37	17	18814497	18814497	+	Silent	SNP	G	G	C	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	C	18814497	G	C	18814497	2	2	350	1	0	0	0	0	0	0	0	1	12592	1335	47	4		4	PRPSAP2	17	18814497	Silent	SNP	G	TCGA-BP-4798-01A-01D-1373-10	1003715	18814497	62380713	18	20901											
KLK4	9622	hgsc.bcm.edu	37	19	51411978	51411978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	T	51411978	G	T	51411978	3	4	350	1	0	0	0	0	1	0	0	0	8413	1232	43	4	444	4	KLK4	19	51411978	Missense_Mutation	SNP	G	TCGA-BP-4798-01A-01D-1373-10		51411978	7717005	19	20902											
C22orf30	0	hgsc.bcm.edu;ucsc.edu	37	22	32112085	32112085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	A	32112085	T	A	32112085	3	1	350	1	0	0	0	0	1	0	0	0	2144	1838	64	5	4739	5	C22orf30	22	32112085	Missense_Mutation	SNP	T	TCGA-BP-4798-01A-01D-1373-10		32112085	19192481	20	20903											
FAM109B	150368	hgsc.bcm.edu	37	22	42473544	42473544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	47b064e2-2ae9-42d9-9cc7-1835f12b6907	769eeb31-8f39-4ac2-804c-584b4565cca0	A	42473544	G	A	42473544	3	1	350	1	0	0	0	0	1	0	0	0	5399	1059	37	1	249	1	FAM109B	22	42473544	Missense_Mutation	SNP	G	TCGA-BP-4798-01A-01D-1373-10	10361459	42473544	8831022	21	20904											
VHL	7428	hgsc.bcm.edu	37	3	10183729	10183730	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4798-01A-01W-1369-10	TCGA-BP-4798-11A-01W-1369-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	7535dcc0-e9d8-4fe0-88ae-1e6f4fa69994	2bb32f23-045f-45de-8f8c-06c1d0049c8a	A	10183730	-	A	10183729	7	5	351	1	0	1	1	0	0	0	0	0	17174	1277	45	0	200	0	VHL	3	10183729	Frame_Shift_Ins	INS	-	TCGA-BP-4798-01A-01W-1369-10		10183729	187838701	1	20905											
FCN3	8547	hgsc.bcm.edu	37	1	27699671	27699671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	A	27699671	G	A	27699671	3	1	352	1	0	0	0	0	1	0	0	0	5800	1000	35	2	566	2	FCN3	1	27699671	Missense_Mutation	SNP	G	TCGA-BP-4799-01A-01D-1373-10		27699671	221550950	1	20906											
EPHX4	253152	hgsc.bcm.edu	37	1	92518079	92518079	+	Silent	SNP	C	C	T	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	T	92518079	C	T	92518079	2	4	352	1	0	0	0	0	0	0	0	1	5184	912	32	2		2	EPHX4	1	92518079	Silent	SNP	C	TCGA-BP-4799-01A-01D-1373-10	64818408	92518079	156732542	2	20907											
AGL	178	hgsc.bcm.edu;ucsc.edu	37	1	100349949	100349949	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	T	100349949	G	T	100349949	4	4	352	1	0	0	0	0	0	1	0	0	384	1291	45	4	2627	4	AGL	1	100349949	Nonsense_Mutation	SNP	G	TCGA-BP-4799-01A-01D-1373-10	7831870	100349949	148900672	3	20908											
CNGA3	1261	hgsc.bcm.edu	37	2	98994251	98994251	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	C	98994251	A	C	98994251	3	2	352	1	0	0	0	0	1	0	0	0	3600	188	7	5	209	5	CNGA3	2	98994251	Missense_Mutation	SNP	A	TCGA-BP-4799-01A-01D-1373-10		98994251	144205122	4	20909											
HDAC4	9759	hgsc.bcm.edu	37	2	240011717	240011717	+	Silent	SNP	T	T	C	rs61752234	bycluster;byfrequency;by1000genomes	TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	C	240011717	T	C	240011717	2	2	352	1	0	0	0	0	0	0	0	1	7016	1567	55	3		3	HDAC4	2	240011717	Silent	SNP	T	TCGA-BP-4799-01A-01D-1373-10	141017466	240011717	3187656	5	20910											
SHISA5	51246	hgsc.bcm.edu;ucsc.edu	37	3	48538657	48538657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	G	48538657	C	G	48538657	3	3	352	1	0	0	0	0	1	0	0	0	14296	478	17	4	596	4	SHISA5	3	48538657	Missense_Mutation	SNP	C	TCGA-BP-4799-01A-01D-1373-10		48538657	149483773	6	20911											
PRDM9	56979	hgsc.bcm.edu;ucsc.edu	37	5	23526898	23526898	+	Silent	SNP	C	C	T	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	T	23526898	C	T	23526898	2	4	352	1	0	0	0	0	0	0	0	1	12473	842	30	2		2	PRDM9	5	23526898	Silent	SNP	C	TCGA-BP-4799-01A-01D-1373-10		23526898	157388362	7	20912											
BRD8	10902	hgsc.bcm.edu;ucsc.edu	37	5	137498825	137498825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	A	137498825	G	A	137498825	3	1	352	1	0	0	0	0	1	0	0	0	1508	1294	45	2	1742	2	BRD8	5	137498825	Missense_Mutation	SNP	G	TCGA-BP-4799-01A-01D-1373-10	113971927	137498825	43416435	8	20913											
EYA4	2070	hgsc.bcm.edu;ucsc.edu	37	6	133804175	133804175	+	Silent	SNP	G	G	A	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	A	133804175	G	A	133804175	2	1	352	1	0	0	0	0	0	0	0	1	5333	1364	48	2		2	EYA4	6	133804175	Silent	SNP	G	TCGA-BP-4799-01A-01D-1373-10		133804175	37310892	9	20914											
MOBKL2B	0	hgsc.bcm.edu;ucsc.edu	37	9	27359175	27359175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	A	27359175	G	A	27359175	3	1	352	1	0	0	0	0	1	0	0	0	9692	1115	39	1	180	1	MOBKL2B	9	27359175	Missense_Mutation	SNP	G	TCGA-BP-4799-01A-01D-1373-10		27359175	113854256	10	20915											
WEE1	7465	hgsc.bcm.edu	37	11	9608378	9608378	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	C	9608378	A	C	9608378	3	2	352	1	0	0	0	0	1	0	0	0	17356	15	1	5	1800	5	WEE1	11	9608378	Missense_Mutation	SNP	A	TCGA-BP-4799-01A-01D-1373-10		9608378	125398138	11	20916											
DDX11	1663	hgsc.bcm.edu	37	12	31253615	31253616	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	TG	31253616	-	TG	31253615	7	5	352	1	0	1	1	0	0	0	0	0	4345	797	28	0	1992	0	DDX11	12	31253615	Frame_Shift_Ins	INS	-	TCGA-BP-4799-01A-01D-1373-10		31253615	102598280	12	20917											
AMN	81693	hgsc.bcm.edu	37	14	103390308	103390308	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	A	103390308	T	A	103390308	3	1	352	1	0	0	0	0	1	0	0	0	580	1551	54	5	209	5	AMN	14	103390308	Missense_Mutation	SNP	T	TCGA-BP-4799-01A-01D-1373-10		103390308	3959232	13	20918											
IFT140	9742	hgsc.bcm.edu	37	16	1614096	1614096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	T	1614096	C	T	1614096	3	4	352	1	0	0	0	0	1	0	0	0	7563	835	29	2	2479	2	IFT140	16	1614096	Missense_Mutation	SNP	C	TCGA-BP-4799-01A-01D-1373-10		1614096	88740657	14	20919											
CNGB1	1258	hgsc.bcm.edu	37	16	57951275	57951275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	T	57951275	A	T	57951275	3	4	352	1	0	0	0	0	1	0	0	0	3602	333	12	5	1744	5	CNGB1	16	57951275	Missense_Mutation	SNP	A	TCGA-BP-4799-01A-01D-1373-10	56337179	57951275	32403478	15	20920											
TRIM37	4591	hgsc.bcm.edu	37	17	57181741	57181741	+	Silent	SNP	A	A	G	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	G	57181741	A	G	57181741	2	3	352	1	0	0	0	0	0	0	0	1	16523	1	1	3		3	TRIM37	17	57181741	Silent	SNP	A	TCGA-BP-4799-01A-01D-1373-10		57181741	24013469	16	20921											
SCN4A	6329	hgsc.bcm.edu	37	17	62024487	62024487	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	T	62024487	G	T	62024487	4	4	352	1	0	0	0	0	0	1	0	0	13933	1059	37	4	2179	4	SCN4A	17	62024487	Nonsense_Mutation	SNP	G	TCGA-BP-4799-01A-01D-1373-10	4842746	62024487	19170723	17	20922											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9047853	9047853	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	C	9047853	G	C	9047853	3	2	352	1	0	0	0	0	1	0	0	0	9980	1203	42	4	10065	4	MUC16	19	9047853	Missense_Mutation	SNP	G	TCGA-BP-4799-01A-01D-1373-10		9047853	50081130	18	20923											
MEIS3	56917	hgsc.bcm.edu	37	19	47912501	47912501	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	A	47912501	T	A	47912501	3	1	352	1	0	0	0	0	1	0	0	0	9476	1667	58	5	572	5	MEIS3	19	47912501	Missense_Mutation	SNP	T	TCGA-BP-4799-01A-01D-1373-10	38864648	47912501	11216482	19	20924											
GATA5	140628	hgsc.bcm.edu	37	20	61040459	61040459	+	Silent	SNP	G	G	A	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	A	61040459	G	A	61040459	2	1	352	1	0	0	0	0	0	0	0	1	6264	1335	47	2		2	GATA5	20	61040459	Silent	SNP	G	TCGA-BP-4799-01A-01D-1373-10		61040459	1985061	20	20925											
TRPM2	7226	hgsc.bcm.edu	37	21	45798894	45798894	+	Silent	SNP	C	C	A	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	A	45798894	C	A	45798894	2	1	352	1	0	0	0	0	0	0	0	1	16598	581	21	4		4	TRPM2	21	45798894	Silent	SNP	C	TCGA-BP-4799-01A-01D-1373-10		45798894	2331001	21	20926											
USP9Y	8287	hgsc.bcm.edu;ucsc.edu	37	Y	14952324	14952324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4799-01A-01D-1373-10	TCGA-BP-4799-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4bda2877-8fb7-4d05-b335-5d4528a555e5	f4ecc60a-f13d-4e80-aefd-ea2518dd5d93	G	14952324	A	G	14952324	3	3	352	1	0	0	0	0	1	0	0	0	17103	101	4	3	6006	3	USP9Y	24	14952324	Missense_Mutation	SNP	A	TCGA-BP-4799-01A-01D-1373-10		14952324	44421242	22	20927											
STIL	6491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	47725984	47725984	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	47725984	A	C	47725984	3	2	353	1	0	0	0	0	1	0	0	0	15294	214	8	5	817	5	STIL	1	47725984	Missense_Mutation	SNP	A	TCGA-BP-4801-01A-02D-1421-08		47725984	201524637	1	20928											
LRRC42	115353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54433413	54433413	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	54433413	T	A	54433413	3	1	353	1	0	0	0	0	1	0	0	0	9007	1551	54	5	1114	5	LRRC42	1	54433413	Missense_Mutation	SNP	T	TCGA-BP-4801-01A-02D-1421-08	6707429	54433413	194817208	2	20929											
ATP8B2	57198	hgsc.bcm.edu	37	1	154316516	154316516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	154316516	G	A	154316516	3	1	353	1	0	0	0	0	1	0	0	0	1195	1261	44	2	2205	2	ATP8B2	1	154316516	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	99883103	154316516	94934105	3	20930											
FAM5C	339479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	190067930	190067930	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	190067930	G	A	190067930	4	1	353	1	0	0	0	0	0	1	0	0	5601	1153	40	1	785	1	FAM5C	1	190067930	Nonsense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	35751414	190067930	59182691	4	20931											
RGS18	64407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	192150572	192150572	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	G	192150572	C	G	192150572	3	3	353	1	0	0	0	0	1	0	0	0	13313	565	20	4	448	4	RGS18	1	192150572	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	2082642	192150572	57100049	5	20932											
GEN1	348654	hgsc.bcm.edu	37	2	17946312	17946312	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	-	17946312	T	-	17946312	7	5	353	1	0	1	0	1	0	0	0	0	6342	1725	60	0	507	0	GEN1	2	17946312	Frame_Shift_Del	DEL	T	TCGA-BP-4801-01A-02D-1421-08		17946312	225253061	6	20933											
PTPN4	5775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	120720267	120720267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	T	120720267	G	T	120720267	4	4	353	1	0	0	0	0	0	1	0	0	12803	1291	45	4	2446	4	PTPN4	2	120720267	Nonsense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	102773955	120720267	122479106	7	20934											
IWS1	55677	broad.mit.edu;ucsc.edu	37	2	128262532	128262532	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	128262532	A	A	128262532	3	1	353	1	0	0	0	0	1	0	0	0	7938	1783	62	5	1560	5	IWS1	2	128262532	Missense_Mutation	SNP	T	TCGA-BP-4801-01A-02D-1421-08	7542265	128262532	114936841	8	20935	253	2									
IWS1	55677	broad.mit.edu;ucsc.edu	37	2	128262533	128262533	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	128262533	A	A	128262533	4	1	353	1	0	0	0	0	0	1	0	0	7938	922	32	4	1561	4	IWS1	2	128262533	Nonsense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	1	128262533	114936840	9	20936	253	2									
TTN	7273	broad.mit.edu	37	2	179604751	179604751	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	G	179604751	G	G	179604751	3	3	353	1	0	0	0	0	1	0	0	0	16747	709	25	4	91580	4	TTN	2	179604751	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	51342218	179604751	63594622	10	20937											
TUBA4A	7277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220115231	220115231	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	220115231	A	C	220115231	3	2	353	1	0	0	0	0	1	0	0	0	16761	188	7	5	160	5	TUBA4A	2	220115231	Missense_Mutation	SNP	A	TCGA-BP-4801-01A-02D-1421-08	40510480	220115231	23084142	11	20938											
TRAF3IP1	26146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	239233980	239233980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	239233980	T	C	239233980	3	2	353	1	0	0	0	0	1	0	0	0	16452	1522	53	3	163	3	TRAF3IP1	2	239233980	Missense_Mutation	SNP	T	TCGA-BP-4801-01A-02D-1421-08	19118749	239233980	3965393	12	20939											
PBRM1	55193	broad.mit.edu;ucsc.edu	37	3	52696148	52696148	+	Splice_Site	SNP	C	A	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	52696148	A	A	52696148	5	1	353	1	0	0	0	0	0	0	1	0	11498	579	20	4	4479	4	PBRM1	3	52696148	Splice_Site	SNP	C	TCGA-BP-4801-01A-02D-1421-08		52696148	145326282	13	20940											
CRYGS	1427	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186256604	186256604	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	T	186256604	A	T	186256604	3	4	353	1	0	0	0	0	1	0	0	0	3921	420	15	5	122	5	CRYGS	3	186256604	Missense_Mutation	SNP	A	TCGA-BP-4801-01A-02D-1421-08	133560456	186256604	11765826	14	20941											
NFXL1	152518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	47880552	47880552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	47880552	C	A	47880552	3	1	353	1	0	0	0	0	1	0	0	0	10395	855	30	4	694	4	NFXL1	4	47880552	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08		47880552	143273724	15	20942											
UBA6	55236	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	68547886	68547886	+	Silent	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	68547886	G	A	68547886	2	1	353	1	0	0	0	0	0	0	0	1	16844	1335	47	2		2	UBA6	4	68547886	Silent	SNP	G	TCGA-BP-4801-01A-02D-1421-08	20667334	68547886	122606390	16	20943											
ARHGAP10	79658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	148861022	148861022	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	148861022	G	C	148861022	3	2	353	1	0	0	0	0	1	0	0	0	862	991	35	4	1329	4	ARHGAP10	4	148861022	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	80313136	148861022	42293254	17	20944											
HIST1H2AH	85235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27115055	27115055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	27115055	G	A	27115055	3	1	353	1	0	0	0	0	1	0	0	0	7141	1029	36	2	150	2	HIST1H2AH	6	27115055	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08		27115055	144000012	18	20945											
SYNGAP1	8831	broad.mit.edu	37	6	33411625	33411625	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	G	33411625	G	G	33411625	3	3	353	1	0	0	0	0	1	0	0	0	15459	449	16	3	3354	3	SYNGAP1	6	33411625	Missense_Mutation	SNP	A	TCGA-BP-4801-01A-02D-1421-08	6296570	33411625	137703442	19	20946											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56500387	56500387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	56500387	C	A	56500387	3	1	353	1	0	0	0	0	1	0	0	0	4785	608	21	4	18880	4	DST	6	56500387	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	23088762	56500387	114614680	20	20947											
FHL5	9457	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	97063550	97063550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	97063550	G	A	97063550	3	1	353	1	0	0	0	0	1	0	0	0	5888	1116	39	1	775	1	FHL5	6	97063550	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	40563163	97063550	74051517	21	20948											
WTAP	9589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160174528	160174528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	160174528	G	A	160174528	3	1	353	1	0	0	0	0	1	0	0	0	17421	1319	46	2	515	2	WTAP	6	160174528	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	63110978	160174528	10940539	22	20949											
AMPH	273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	38429478	38429478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	38429478	G	A	38429478	3	1	353	1	0	0	0	0	1	0	0	0	588	1319	46	2	188	2	AMPH	7	38429478	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08		38429478	120709185	23	20950											
NCOA2	10499	hgsc.bcm.edu;ucsc.edu	37	8	71069452	71069452	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	-	71069452	T	-	71069452	7	5	353	1	0	1	0	1	0	0	0	0	10236	1493	52	0	3298	0	NCOA2	8	71069452	Frame_Shift_Del	DEL	T	TCGA-BP-4801-01A-02D-1421-08		71069452	75294570	24	20951											
FAM135B	51059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	139165076	139165076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	139165076	C	A	139165076	3	1	353	1	0	0	0	0	1	0	0	0	5453	739	26	4	2610	4	FAM135B	8	139165076	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	68095624	139165076	7198946	25	20952											
DOCK8	81704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	304680	304680	+	Silent	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	304680	G	A	304680	2	1	353	1	0	0	0	0	0	0	0	1	4695	1339	47	2		2	DOCK8	9	304680	Silent	SNP	G	TCGA-BP-4801-01A-02D-1421-08		304680	140908751	26	20953											
PCSK5	5125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	78601100	78601100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	78601100	A	C	78601100	3	2	353	1	0	0	0	0	1	0	0	0	11610	275	10	5	360	5	PCSK5	9	78601100	Missense_Mutation	SNP	A	TCGA-BP-4801-01A-02D-1421-08	78296420	78601100	62612331	27	20954											
AKNA	80709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	117139683	117139683	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	117139683	T	A	117139683	3	1	353	1	0	0	0	0	1	0	0	0	463	1551	54	5	3995	5	AKNA	9	117139683	Missense_Mutation	SNP	T	TCGA-BP-4801-01A-02D-1421-08	38538583	117139683	24073748	28	20955											
ADAMTS13	11093	broad.mit.edu;hgsc.bcm.edu	37	9	136313849	136313849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	136313849	G	C	136313849	3	2	353	1	0	0	0	0	1	0	0	0	258	1130	39	4	2947	4	ADAMTS13	9	136313849	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	19174166	136313849	4899582	29	20956											
HTR7	3363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	92617162	92617162	+	Silent	SNP	C	C	G	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	G	92617162	C	G	92617162	2	3	353	1	0	0	0	0	0	0	0	1	7459	755	27	4		4	HTR7	10	92617162	Silent	SNP	C	TCGA-BP-4801-01A-02D-1421-08		92617162	42917585	30	20957											
ATG2A	23130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64676580	64676580	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	G	64676580	C	G	64676580	3	3	353	1	0	0	0	0	1	0	0	0	1093	624	22	4	3673	4	ATG2A	11	64676580	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08		64676580	70329936	31	20958											
MRGPRD	116512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	68747868	68747868	+	Silent	SNP	C	C	G	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	G	68747868	C	G	68747868	2	3	353	1	0	0	0	0	0	0	0	1	9770	465	17	4		4	MRGPRD	11	68747868	Silent	SNP	C	TCGA-BP-4801-01A-02D-1421-08	4071288	68747868	66258648	32	20959											
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117332278	117332278	+	Silent	SNP	C	C	G	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	G	117332278	C	G	117332278	2	3	353	1	0	0	0	0	0	0	0	1	4771	465	17	4		4	DSCAML1	11	117332278	Silent	SNP	C	TCGA-BP-4801-01A-02D-1421-08	48584410	117332278	17674238	33	20960											
PRMT8	56341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	3659255	3659255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	3659255	G	A	3659255	3	1	353	1	0	0	0	0	1	0	0	0	12552	1348	47	2	425	2	PRMT8	12	3659255	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08		3659255	130192640	34	20961											
PTPRB	5787	broad.mit.edu;hgsc.bcm.edu	37	12	71029653	71029653	+	Silent	SNP	G	G	T	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	T	71029653	G	T	71029653	2	4	353	1	0	0	0	0	0	0	0	1	12809	932	33	4		4	PTPRB	12	71029653	Silent	SNP	G	TCGA-BP-4801-01A-02D-1421-08	67370398	71029653	62822242	35	20962											
HCFC2	29915	hgsc.bcm.edu;ucsc.edu	37	12	104476286	104476286	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	-	104476286	T	-	104476286	7	5	353	1	0	1	0	1	0	0	0	0	7000	1493	52	0	798	0	HCFC2	12	104476286	Frame_Shift_Del	DEL	T	TCGA-BP-4801-01A-02D-1421-08	33446633	104476286	29375609	36	20963											
ATP2A2	488	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	110783864	110783864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	110783864	G	C	110783864	3	2	353	1	0	0	0	0	1	0	0	0	1137	1232	43	4	2874	4	ATP2A2	12	110783864	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	6307578	110783864	23068031	37	20964											
BRCA2	675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32906553	32906553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	32906553	C	A	32906553	3	1	353	1	0	0	0	0	1	0	0	0	1501	913	32	4	972	4	BRCA2	13	32906553	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08		32906553	82263325	38	20965											
DCT	1638	hgsc.bcm.edu;ucsc.edu	37	13	95092164	95092165	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	-	95092165	TG	-	95092164	7	5	353	1	0	1	0	1	0	0	0	0	4306	1567	55	0	15	0	DCT	13	95092164	Frame_Shift_Del	DEL	TG	TCGA-BP-4801-01A-02D-1421-08	62185611	95092164	20077714	39	20966											
GPR183	1880	hgsc.bcm.edu;ucsc.edu	37	13	99947650	99947652	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	-	99947652	AAT	-	99947650	7	5	353	1	0	1	0	1	0	0	0	0	6685	126	5	0	339	0	GPR183	13	99947650	In_Frame_Del	DEL	AAT	TCGA-BP-4801-01A-02D-1421-08	4855486	99947650	15222228	40	20967											
SPRED1	161742	broad.mit.edu	37	15	38591664	38591664	+	Silent	SNP	C	T	T	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	T	38591664	T	T	38591664	2	4	353	1	0	0	0	0	0	0	0	1	15104	767	27	1		1	SPRED1	15	38591664	Silent	SNP	C	TCGA-BP-4801-01A-02D-1421-08		38591664	63939728	41	20968											
SHF	90525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45470431	45470431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	45470431	C	A	45470431	3	1	353	1	0	0	0	0	1	0	0	0	14290	855	30	4	918	4	SHF	15	45470431	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	6878767	45470431	57060961	42	20969											
FES	2242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91430480	91430480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	G	91430480	A	G	91430480	3	3	353	1	0	0	0	0	1	0	0	0	5827	159	6	3	562	3	FES	15	91430480	Missense_Mutation	SNP	A	TCGA-BP-4801-01A-02D-1421-08	45960049	91430480	11100912	43	20970											
TSC2	7249	hgsc.bcm.edu	37	16	2126068	2126068	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	2126068	G	A	2126068	5	1	353	1	0	0	0	0	0	0	1	0	16618	1014	35	2	2729	2	TSC2	16	2126068	Splice_Site	SNP	G	TCGA-BP-4801-01A-02D-1421-08		2126068	88228685	44	20971	254	2									
TSC2	7249	hgsc.bcm.edu	37	16	2126070	2126070	+	Missense_Mutation	SNP	T	T	A	rs45463498	bycluster;alternate_allele	TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	2126070	T	A	2126070	3	1	353	1	0	0	0	0	1	0	0	0	16618	1739	60	5	2731	5	TSC2	16	2126070	Missense_Mutation	SNP	T	TCGA-BP-4801-01A-02D-1421-08	2	2126070	88228683	45	20972	254	2									
GPRC5B	51704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	19883415	19883415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	T	19883415	C	T	19883415	3	4	353	1	0	0	0	0	1	0	0	0	6732	826	29	2	470	2	GPRC5B	16	19883415	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	17757345	19883415	70471338	46	20973											
IL21R	50615	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	27460474	27460474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	T	27460474	G	T	27460474	3	4	353	1	0	0	0	0	1	0	0	0	7678	1203	42	4	1517	4	IL21R	16	27460474	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	7577059	27460474	62894279	47	20974											
TSR1	55720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	2238674	2238674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	2238674	C	A	2238674	3	1	353	1	0	0	0	0	1	0	0	0	16676	478	17	4	2026	4	TSR1	17	2238674	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08		2238674	78956536	48	20975											
MIS12	79003	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5392574	5392574	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	5392574	A	C	5392574	3	2	353	1	0	0	0	0	1	0	0	0	9601	246	9	5	394	5	MIS12	17	5392574	Missense_Mutation	SNP	A	TCGA-BP-4801-01A-02D-1421-08	3153900	5392574	75802636	49	20976											
TOP3A	7156	hgsc.bcm.edu;ucsc.edu	37	17	18178133	18178133	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	-	18178133	A	-	18178133	7	5	353	1	0	1	0	1	0	0	0	0	16379	130	5	0	20	0	TOP3A	17	18178133	Frame_Shift_Del	DEL	A	TCGA-BP-4801-01A-02D-1421-08	12785559	18178133	63017077	50	20977											
ASB16	92591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42249679	42249679	+	Silent	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	42249679	G	A	42249679	2	1	353	1	0	0	0	0	0	0	0	1	1020	1310	46	2		2	ASB16	17	42249679	Silent	SNP	G	TCGA-BP-4801-01A-02D-1421-08	24071546	42249679	38945531	51	20978											
OSBPL7	114881	broad.mit.edu	37	17	45891939	45891939	+	Silent	SNP	G	C	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	45891939	C	C	45891939	2	2	353	1	0	0	0	0	0	0	0	1	11289	1335	47	4		4	OSBPL7	17	45891939	Silent	SNP	G	TCGA-BP-4801-01A-02D-1421-08	3642260	45891939	35303271	52	20979											
RAB40B	10966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	80622419	80622419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	80622419	C	A	80622419	3	1	353	1	0	0	0	0	1	0	0	0	12954	912	32	4	700	4	RAB40B	17	80622419	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	34730480	80622419	572791	53	20980											
MRO	83876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	48335764	48335764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	T	48335764	G	T	48335764	3	4	353	1	0	0	0	0	1	0	0	0	9779	1357	47	4	763	4	MRO	18	48335764	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08		48335764	29741484	54	20981											
LMAN1	3998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	57013225	57013225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	57013225	T	C	57013225	3	2	353	1	0	0	0	0	1	0	0	0	8843	1551	54	3	675	3	LMAN1	18	57013225	Missense_Mutation	SNP	T	TCGA-BP-4801-01A-02D-1421-08	8677461	57013225	21064023	55	20982											
CACNA1A	773	hgsc.bcm.edu;ucsc.edu	37	19	13566012	13566013	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	-	13566013	AT	-	13566012	7	5	353	1	0	1	0	1	0	0	0	0	2540	217	8	0	7510	0	CACNA1A	19	13566012	Frame_Shift_Del	DEL	AT	TCGA-BP-4801-01A-02D-1421-08		13566012	45562971	56	20983											
COPE	11316	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19014155	19014155	+	Silent	SNP	G	G	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	19014155	G	A	19014155	2	1	353	1	0	0	0	0	0	0	0	1	3732	1277	45	2		2	COPE	19	19014155	Silent	SNP	G	TCGA-BP-4801-01A-02D-1421-08	5448143	19014155	40114828	57	20984											
PSG6	5675	broad.mit.edu;hgsc.bcm.edu	37	19	43415010	43415010	+	Missense_Mutation	SNP	G	G	A	rs186311462	by1000genomes	TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	43415010	G	A	43415010	3	1	353	1	0	0	0	0	1	0	0	0	12669	1101	38	1	934	1	PSG6	19	43415010	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	24400855	43415010	15713973	58	20985											
SIRPA	140885	hgsc.bcm.edu	37	20	1895842	1895842	+	Silent	SNP	T	T	C	rs17853847	bycluster;byfrequency;by1000genomes	TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	1895842	T	C	1895842	2	2	353	1	0	0	0	0	0	0	0	1	14345	1538	54	3		3	SIRPA	20	1895842	Silent	SNP	T	TCGA-BP-4801-01A-02D-1421-08		1895842	61129678	59	20986											
EDEM2	55741	broad.mit.edu;hgsc.bcm.edu	37	20	33703674	33703674	+	Silent	SNP	A	A	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	33703674	A	C	33703674	2	2	353	1	0	0	0	0	0	0	0	1	4914	175	7	5		5	EDEM2	20	33703674	Silent	SNP	A	TCGA-BP-4801-01A-02D-1421-08	31807832	33703674	29321846	60	20987											
KIAA1755	85449	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	36869596	36869596	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	36869596	C	A	36869596	4	1	353	1	0	0	0	0	0	1	0	0	8264	864	30	4	2713	4	KIAA1755	20	36869596	Nonsense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	3165922	36869596	26155924	61	20988											
PLTP	5360	broad.mit.edu	37	20	44534935	44534935	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	44534935	A	A	44534935	3	1	353	1	0	0	0	0	1	0	0	0	12121	1174	41	2	840	2	PLTP	20	44534935	Missense_Mutation	SNP	G	TCGA-BP-4801-01A-02D-1421-08	7665339	44534935	18490585	62	20989											
CECR1	51816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	17672628	17672628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	C	17672628	A	C	17672628	3	2	353	1	0	0	0	0	1	0	0	0	3207	43	2	5	733	5	CECR1	22	17672628	Missense_Mutation	SNP	A	TCGA-BP-4801-01A-02D-1421-08		17672628	33631938	63	20990											
EWSR1	2130	broad.mit.edu;hgsc.bcm.edu	37	22	29686417	29686417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	29686417	C	A	29686417	3	1	353	1	0	0	0	0	1	0	0	0	5298	738	26	4	1046	4	EWSR1	22	29686417	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	12013789	29686417	21618149	64	20991											
BRD1	23774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50191673	50191673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	G	50191673	C	G	50191673	3	3	353	1	0	0	0	0	1	0	0	0	1503	564	20	4	1330	4	BRD1	22	50191673	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08	20505256	50191673	1112893	65	20992											
G6PD	2539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153762612	153762612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4801-01A-02D-1421-08	TCGA-BP-4801-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d3e62cb1-5ced-42cb-a360-479ee01877aa	8e5edfea-ec07-46dd-824f-6b0ea9a34e3e	A	153762612	C	A	153762612	3	1	353	1	0	0	0	0	1	0	0	0	6153	912	32	4	994	4	G6PD	23	153762612	Missense_Mutation	SNP	C	TCGA-BP-4801-01A-02D-1421-08		153762612	1507948	66	20993											
LRRC8D	55144	hgsc.bcm.edu;ucsc.edu	37	1	90400549	90400549	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	90400549	A	C	90400549	3	2	354	1	0	0	0	0	1	0	0	0	9031	246	9	5	1924	5	LRRC8D	1	90400549	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10		90400549	158850072	1	20994											
GFI1	2672	hgsc.bcm.edu;ucsc.edu	37	1	92944149	92944149	+	Silent	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	92944149	G	A	92944149	2	1	354	1	0	0	0	0	0	0	0	1	6346	1368	48	2		2	GFI1	1	92944149	Silent	SNP	G	TCGA-BP-4803-01A-01D-1373-10	2543600	92944149	156306472	2	20995											
SELE	6401	hgsc.bcm.edu;ucsc.edu	37	1	169695896	169695896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	169695896	A	G	169695896	3	3	354	1	0	0	0	0	1	0	0	0	14026	304	11	3	147	3	SELE	1	169695896	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	76751747	169695896	79554725	3	20996											
CDC73	79577	hgsc.bcm.edu;ucsc.edu	37	1	193094288	193094289	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	193094289	-	T	193094288	7	5	354	1	0	1	1	0	0	0	0	0	3087	217	8	0	184	0	CDC73	1	193094288	Frame_Shift_Ins	INS	-	TCGA-BP-4803-01A-01D-1373-10	23398392	193094288	56156333	4	20997											
ADD2	119	hgsc.bcm.edu	37	2	70917963	70917963	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	70917963	T	A	70917963	3	1	354	1	0	0	0	0	1	0	0	0	305	1606	56	5	1589	5	ADD2	2	70917963	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10		70917963	172281410	5	20998											
DNAH6	1768	hgsc.bcm.edu;ucsc.edu	37	2	84931422	84931422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	84931422	G	A	84931422	3	1	354	1	0	0	0	0	1	0	0	0	4607	1319	46	2	8659	2	DNAH6	2	84931422	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	14013459	84931422	158267951	6	20999											
USP39	10713	hgsc.bcm.edu;ucsc.edu	37	2	85866457	85866457	+	Silent	SNP	C	C	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	85866457	C	T	85866457	2	4	354	1	0	0	0	0	0	0	0	1	17082	816	29	2		2	USP39	2	85866457	Silent	SNP	C	TCGA-BP-4803-01A-01D-1373-10	935035	85866457	157332916	7	21000											
DNAJC10	54431	hgsc.bcm.edu	37	2	183622508	183622508	+	Silent	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	183622508	G	A	183622508	2	1	354	1	0	0	0	0	0	0	0	1	4631	933	33	2		2	DNAJC10	2	183622508	Silent	SNP	G	TCGA-BP-4803-01A-01D-1373-10	97756051	183622508	59576865	8	21001											
FAM134A	79137	hgsc.bcm.edu	37	2	220046449	220046449	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	220046449	T	A	220046449	3	1	354	1	0	0	0	0	1	0	0	0	5449	1609	56	5	997	5	FAM134A	2	220046449	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10	36423941	220046449	23152924	9	21002											
PBRM1	55193	ucsc.edu	37	3	52682360	52682362	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	-	52682362	CTT	-	52682360	7	5	354	1	0	1	0	1	0	0	0	0	11498	695	24	0	4183	0	PBRM1	3	52682360	In_Frame_Del	DEL	CTT	TCGA-BP-4803-01A-01D-1373-10		52682360	145340070	10	21003											
SLC41A3	54946	hgsc.bcm.edu	37	3	125769795	125769795	+	Silent	SNP	G	G	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	125769795	G	C	125769795	2	2	354	1	0	0	0	0	0	0	0	1	14644	929	33	4		4	SLC41A3	3	125769795	Silent	SNP	G	TCGA-BP-4803-01A-01D-1373-10	73087435	125769795	72252635	11	21004											
CLSTN2	64084	hgsc.bcm.edu;ucsc.edu	37	3	140282917	140282917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	140282917	C	A	140282917	3	1	354	1	0	0	0	0	1	0	0	0	3564	565	20	4	2659	4	CLSTN2	3	140282917	Missense_Mutation	SNP	C	TCGA-BP-4803-01A-01D-1373-10	14513122	140282917	57739513	12	21005											
ACAP2	23527	hgsc.bcm.edu;ucsc.edu	37	3	195013057	195013057	+	Silent	SNP	T	T	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	195013057	T	C	195013057	2	2	354	1	0	0	0	0	0	0	0	1	119	1567	55	3		3	ACAP2	3	195013057	Silent	SNP	T	TCGA-BP-4803-01A-01D-1373-10	54730140	195013057	3009373	13	21006											
ANXA3	306	hgsc.bcm.edu;ucsc.edu	37	4	79516573	79516573	+	Silent	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	79516573	G	A	79516573	2	1	354	1	0	0	0	0	0	0	0	1	719	1335	47	2		2	ANXA3	4	79516573	Silent	SNP	G	TCGA-BP-4803-01A-01D-1373-10		79516573	111637703	14	21007											
FAT1	2195	hgsc.bcm.edu;ucsc.edu	37	4	187549412	187549412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	187549412	C	T	187549412	3	4	354	1	0	0	0	0	1	0	0	0	5696	623	22	2	9136	2	FAT1	4	187549412	Missense_Mutation	SNP	C	TCGA-BP-4803-01A-01D-1373-10	108032839	187549412	3604864	15	21008											
TARS	6897	hgsc.bcm.edu;ucsc.edu	37	5	33458717	33458717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	33458717	T	C	33458717	3	2	354	1	0	0	0	0	1	0	0	0	15571	1841	64	3	1069	3	TARS	5	33458717	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10		33458717	147456543	16	21009											
DMXL1	1657	hgsc.bcm.edu;ucsc.edu	37	5	118506472	118506472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	118506472	A	G	118506472	3	3	354	1	0	0	0	0	1	0	0	0	4596	15	1	3	6080	3	DMXL1	5	118506472	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	85047755	118506472	62408788	17	21010											
HSD17B4	3295	hgsc.bcm.edu;ucsc.edu	37	5	118809663	118809663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	118809663	T	C	118809663	3	2	354	1	0	0	0	0	1	0	0	0	7393	1725	60	3	183	3	HSD17B4	5	118809663	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10	303191	118809663	62105597	18	21011											
ZNF608	57507	hgsc.bcm.edu;ucsc.edu	37	5	123984358	123984358	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	123984358	G	C	123984358	3	2	354	1	0	0	0	0	1	0	0	0	18046	1252	44	4	2843	4	ZNF608	5	123984358	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	5174695	123984358	56930902	19	21012											
RANBP17	64901	hgsc.bcm.edu;ucsc.edu	37	5	170305135	170305135	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	170305135	T	G	170305135	3	3	354	1	0	0	0	0	1	0	0	0	13040	1551	54	5	59	5	RANBP17	5	170305135	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10	46320777	170305135	10610125	20	21013											
BTNL3	10917	hgsc.bcm.edu;ucsc.edu	37	5	180432688	180432688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	180432688	G	A	180432688	3	1	354	1	0	0	0	0	1	0	0	0	1568	1058	37	1	1247	1	BTNL3	5	180432688	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	10127553	180432688	482572	21	21014											
NMBR	4829	hgsc.bcm.edu;ucsc.edu	37	6	142397016	142397016	+	Silent	SNP	A	A	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	142397016	A	G	142397016	2	3	354	1	0	0	0	0	0	0	0	1	10494	127	5	3		3	NMBR	6	142397016	Silent	SNP	A	TCGA-BP-4803-01A-01D-1373-10		142397016	28718051	22	21015											
SYNJ2	8871	hgsc.bcm.edu	37	6	158499241	158499241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	158499241	A	C	158499241	3	2	354	1	0	0	0	0	1	0	0	0	15465	14	1	5	2565	5	SYNJ2	6	158499241	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	16102225	158499241	12615826	23	21016											
PNLDC1	154197	hgsc.bcm.edu;ucsc.edu	37	6	160240086	160240086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	160240086	C	A	160240086	3	1	354	1	0	0	0	0	1	0	0	0	12155	913	32	4	1395	4	PNLDC1	6	160240086	Missense_Mutation	SNP	C	TCGA-BP-4803-01A-01D-1373-10	1740845	160240086	10874981	24	21017											
DFNA5	1687	hgsc.bcm.edu;ucsc.edu	37	7	24784219	24784219	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	24784219	C	G	24784219	3	3	354	1	0	0	0	0	1	0	0	0	4456	680	24	4	1156	4	DFNA5	7	24784219	Missense_Mutation	SNP	C	TCGA-BP-4803-01A-01D-1373-10		24784219	134354444	25	21018											
PVRIG	79037	hgsc.bcm.edu	37	7	99818783	99818783	+	Missense_Mutation	SNP	G	G	A	rs145493958		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	99818783	G	A	99818783	3	1	354	1	0	0	0	0	1	0	0	0	12851	1232	43	2	908	2	PVRIG	7	99818783	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	75034564	99818783	59319880	26	21019											
AGPAT6	137964	hgsc.bcm.edu;ucsc.edu	37	8	41476308	41476308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	41476308	T	C	41476308	3	2	354	1	0	0	0	0	1	0	0	0	391	1638	57	3	1197	3	AGPAT6	8	41476308	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10		41476308	104887714	27	21020											
RUNX1T1	862	hgsc.bcm.edu	37	8	92982930	92982930	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	92982930	C	A	92982930	4	1	354	1	0	0	0	0	0	1	0	0	13760	864	30	4	327	4	RUNX1T1	8	92982930	Nonsense_Mutation	SNP	C	TCGA-BP-4803-01A-01D-1373-10	51506622	92982930	53381092	28	21021											
ABCA1	19	hgsc.bcm.edu;ucsc.edu	37	9	107589428	107589428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	107589428	C	T	107589428	3	4	354	1	0	0	0	0	1	0	0	0	28	565	20	2	4787	2	ABCA1	9	107589428	Missense_Mutation	SNP	C	TCGA-BP-4803-01A-01D-1373-10		107589428	33624003	29	21022											
C9orf84	158401	hgsc.bcm.edu;ucsc.edu	37	9	114490155	114490155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	114490155	T	G	114490155	3	3	354	1	0	0	0	0	1	0	0	0	2502	1609	56	5	2998	5	C9orf84	9	114490155	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10	6900727	114490155	26723276	30	21023											
C9orf173	441476	hgsc.bcm.edu;ucsc.edu	37	9	140146888	140146888	+	Splice_Site	SNP	G	G	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	140146888	G	T	140146888	5	4	354	1	0	0	0	0	0	0	1	0	2474	956	33	4	417	4	C9orf173	9	140146888	Splice_Site	SNP	G	TCGA-BP-4803-01A-01D-1373-10	25656733	140146888	1066543	31	21024											
FAM178A	55719	hgsc.bcm.edu;ucsc.edu	37	10	102697179	102697179	+	Silent	SNP	C	C	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	102697179	C	T	102697179	2	4	354	1	0	0	0	0	0	0	0	1	5507	564	20	2		2	FAM178A	10	102697179	Silent	SNP	C	TCGA-BP-4803-01A-01D-1373-10		102697179	32837568	32	21025											
C10orf84	0	hgsc.bcm.edu;ucsc.edu	37	10	120085698	120085698	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	120085698	C	A	120085698	4	1	354	1	0	0	0	0	0	1	0	0	1623	835	29	4	202	4	C10orf84	10	120085698	Nonsense_Mutation	SNP	C	TCGA-BP-4803-01A-01D-1373-10	17388519	120085698	15449049	33	21026											
RNF141	50862	hgsc.bcm.edu	37	11	10536463	10536463	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	10536463	T	A	10536463	3	1	354	1	0	0	0	0	1	0	0	0	13457	1680	58	5	3	5	RNF141	11	10536463	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10		10536463	124470053	34	21027											
MRPL16	54948	hgsc.bcm.edu;ucsc.edu	37	11	59577390	59577390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	59577390	G	T	59577390	3	4	354	1	0	0	0	0	1	0	0	0	9788	1174	41	4	708	4	MRPL16	11	59577390	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	49040927	59577390	75429126	35	21028											
MTL5	9633	hgsc.bcm.edu	37	11	68483356	68483356	+	Silent	SNP	A	A	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	68483356	A	G	68483356	2	3	354	1	0	0	0	0	0	0	0	1	9943	446	16	3		3	MTL5	11	68483356	Silent	SNP	A	TCGA-BP-4803-01A-01D-1373-10	8905966	68483356	66523160	36	21029											
CLSTN3	9746	hgsc.bcm.edu	37	12	7286184	7286184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	7286184	T	C	7286184	3	2	354	1	0	0	0	0	1	0	0	0	3565	1783	62	3	213	3	CLSTN3	12	7286184	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10		7286184	126565711	37	21030											
PRICKLE1	144165	hgsc.bcm.edu;ucsc.edu	37	12	42854246	42854246	+	Silent	SNP	T	T	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	42854246	T	G	42854246	2	3	354	1	0	0	0	0	0	0	0	1	12496	1608	56	5		5	PRICKLE1	12	42854246	Silent	SNP	T	TCGA-BP-4803-01A-01D-1373-10	35568062	42854246	90997649	38	21031											
GPR182	11318	hgsc.bcm.edu	37	12	57390041	57390041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	57390041	G	A	57390041	3	1	354	1	0	0	0	0	1	0	0	0	6684	1087	38	1	1050	1	GPR182	12	57390041	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	14535795	57390041	76461854	39	21032											
IL22	50616	hgsc.bcm.edu	37	12	68647174	68647174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	68647174	T	C	68647174	3	2	354	1	0	0	0	0	1	0	0	0	7679	1580	55	3	504	3	IL22	12	68647174	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10	11257133	68647174	65204721	40	21033											
FMN1	342184	hgsc.bcm.edu;ucsc.edu	37	15	33358776	33358776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	33358776	G	A	33358776	3	1	354	1	0	0	0	0	1	0	0	0	5956	1059	37	1	2348	1	FMN1	15	33358776	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10		33358776	69172616	41	21034											
GATM	2628	hgsc.bcm.edu	37	15	45654318	45654318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	45654318	A	C	45654318	3	2	354	1	0	0	0	0	1	0	0	0	6270	420	15	5	14	5	GATM	15	45654318	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	12295542	45654318	56877074	42	21035											
PML	5371	hgsc.bcm.edu	37	15	74328141	74328141	+	Missense_Mutation	SNP	G	G	T	rs743581	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	74328141	G	T	74328141	3	4	354	1	0	0	0	0	1	0	0	0	12142	1261	44	4	2503	4	PML	15	74328141	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	28673823	74328141	28203251	43	21036											
ZNF597	146434	hgsc.bcm.edu;ucsc.edu	37	16	3486668	3486668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	3486668	G	A	3486668	3	1	354	1	0	0	0	0	1	0	0	0	18039	1000	35	2	247	2	ZNF597	16	3486668	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10		3486668	86868085	44	21037											
DNAH3	55567	hgsc.bcm.edu;ucsc.edu	37	16	21117847	21117847	+	Silent	SNP	G	G	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	21117847	G	T	21117847	2	4	354	1	0	0	0	0	0	0	0	1	4605	1144	40	4		4	DNAH3	16	21117847	Silent	SNP	G	TCGA-BP-4803-01A-01D-1373-10	17631179	21117847	69236906	45	21038											
CENPN	55839	hgsc.bcm.edu;ucsc.edu	37	16	81056260	81056260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	81056260	A	C	81056260	3	2	354	1	0	0	0	0	1	0	0	0	3240	449	16	5	612	5	CENPN	16	81056260	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	59938413	81056260	9298493	46	21039											
SLC2A4	6517	hgsc.bcm.edu;ucsc.edu	37	17	7186902	7186902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	7186902	C	G	7186902	3	3	354	1	0	0	0	0	1	0	0	0	14559	903	32	4	271	4	SLC2A4	17	7186902	Missense_Mutation	SNP	C	TCGA-BP-4803-01A-01D-1373-10		7186902	74008308	47	21040											
PER1	5187	hgsc.bcm.edu	37	17	8051110	8051110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	8051110	G	C	8051110	3	2	354	1	0	0	0	0	1	0	0	0	11736	1232	43	4	2654	4	PER1	17	8051110	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	864208	8051110	73144100	48	21041											
C17orf53	78995	hgsc.bcm.edu	37	17	42225907	42225907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	42225907	G	T	42225907	3	4	354	1	0	0	0	0	1	0	0	0	1864	1348	47	4	746	4	C17orf53	17	42225907	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	34174797	42225907	38969303	49	21042											
PPM1E	22843	hgsc.bcm.edu;ucsc.edu	37	17	57057404	57057404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	57057404	A	C	57057404	3	2	354	1	0	0	0	0	1	0	0	0	12348	246	9	5	1306	5	PPM1E	17	57057404	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	14831497	57057404	24137806	50	21043											
SMURF2	64750	hgsc.bcm.edu;ucsc.edu	37	17	62574659	62574659	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	62574659	A	T	62574659	3	4	354	1	0	0	0	0	1	0	0	0	14833	69	3	5	1482	5	SMURF2	17	62574659	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	5517255	62574659	18620551	51	21044											
QRICH2	84074	hgsc.bcm.edu	37	17	74288814	74288814	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	74288814	A	T	74288814	3	4	354	1	0	0	0	0	1	0	0	0	12893	391	14	5	3559	5	QRICH2	17	74288814	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	11714155	74288814	6906396	52	21045											
CCDC11	220136	hgsc.bcm.edu;ucsc.edu	37	18	47753857	47753857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	47753857	T	C	47753857	3	2	354	1	0	0	0	0	1	0	0	0	2748	1725	60	3	109	3	CCDC11	18	47753857	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10		47753857	30323391	53	21046											
PLIN4	729359	hgsc.bcm.edu	37	19	4511365	4511365	+	Silent	SNP	C	C	G	rs116973517	byfrequency;by1000genomes	TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	4511365	C	G	4511365	2	3	354	1	0	0	0	0	0	0	0	1	12099	813	29	4		4	PLIN4	19	4511365	Silent	SNP	C	TCGA-BP-4803-01A-01D-1373-10		4511365	54617618	54	21047											
GPR108	56927	hgsc.bcm.edu;ucsc.edu	37	19	6736679	6736679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	6736679	T	C	6736679	3	2	354	1	0	0	0	0	1	0	0	0	6631	1638	57	3	1535	3	GPR108	19	6736679	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10	2225314	6736679	52392304	55	21048											
CCDC151	115948	hgsc.bcm.edu	37	19	11533441	11533441	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	11533441	A	T	11533441	3	4	354	1	0	0	0	0	1	0	0	0	2788	188	7	5	602	5	CCDC151	19	11533441	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	4796762	11533441	47595542	56	21049											
PDCD2L	84306	hgsc.bcm.edu	37	19	34900211	34900211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	34900211	G	T	34900211	3	4	354	1	0	0	0	0	1	0	0	0	11627	1116	39	4	496	4	PDCD2L	19	34900211	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10	23366770	34900211	24228772	57	21050											
ZNF573	126231	hgsc.bcm.edu;ucsc.edu	37	19	38229952	38229952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	38229952	C	T	38229952	3	4	354	1	0	0	0	0	1	0	0	0	18017	565	20	2	562	2	ZNF573	19	38229952	Missense_Mutation	SNP	C	TCGA-BP-4803-01A-01D-1373-10	3329741	38229952	20899031	58	21051											
IDH3B	3420	hgsc.bcm.edu;ucsc.edu	37	20	2641180	2641180	+	Silent	SNP	C	C	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	2641180	C	A	2641180	2	1	354	1	0	0	0	0	0	0	0	1	7504	842	30	4		4	IDH3B	20	2641180	Silent	SNP	C	TCGA-BP-4803-01A-01D-1373-10		2641180	60384340	59	21052											
PCMTD2	55251	hgsc.bcm.edu;ucsc.edu	37	20	62891425	62891425	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	G	62891425	T	G	62891425	3	3	354	1	0	0	0	0	1	0	0	0	11594	1435	50	5	109	5	PCMTD2	20	62891425	Missense_Mutation	SNP	T	TCGA-BP-4803-01A-01D-1373-10	60250245	62891425	134095	60	21053											
NCAPH2	29781	hgsc.bcm.edu;ucsc.edu	37	22	50960440	50960440	+	Silent	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	50960440	G	A	50960440	2	1	354	1	0	0	0	0	0	0	0	1	10217	1190	42	2		2	NCAPH2	22	50960440	Silent	SNP	G	TCGA-BP-4803-01A-01D-1373-10		50960440	344126	61	21054											
MAP7D2	256714	hgsc.bcm.edu	37	X	20060638	20060638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	A	20060638	G	A	20060638	3	1	354	1	0	0	0	0	1	0	0	0	9275	942	33	2	1368	2	MAP7D2	23	20060638	Missense_Mutation	SNP	G	TCGA-BP-4803-01A-01D-1373-10		20060638	135209922	62	21055											
KDM5C	8242	hgsc.bcm.edu	37	X	53228259	53228259	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	C	53228259	A	C	53228259	3	2	354	1	0	0	0	0	1	0	0	0	8142	14	1	5	2685	5	KDM5C	23	53228259	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	33167621	53228259	102042301	63	21056											
AMMECR1	9949	hgsc.bcm.edu;ucsc.edu	37	X	109445697	109445697	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4803-01A-01D-1373-10	TCGA-BP-4803-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	699ca81e-1f9c-48ea-b02f-aac6ab5ff452	46b958de-2b69-46be-9efd-29207ecbad2e	T	109445697	A	T	109445697	3	4	354	1	0	0	0	0	1	0	0	0	578	420	15	5	246	5	AMMECR1	23	109445697	Missense_Mutation	SNP	A	TCGA-BP-4803-01A-01D-1373-10	56217438	109445697	45824863	64	21057											
WT1	7490	hgsc.bcm.edu	37	11	32456513	32456514	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-BP-4803-01A-01W-1369-10	TCGA-BP-4803-11A-01W-1369-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	730d4208-4bcf-46c4-bdc1-706b003eda3d	5d0ee48f-c925-437e-b9ba-d2cfb57846a2	-	32456514	CC	-	32456513	7	5	355	1	0	1	0	1	0	0	0	0	17420	739	26	0	1214	0	WT1	11	32456513	Frame_Shift_Del	DEL	CC	TCGA-BP-4803-01A-01W-1369-10		32456513	102550003	1	21058											
KANK4	163782	hgsc.bcm.edu	37	1	62740072	62740072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	A	62740072	G	A	62740072	3	1	356	1	0	0	0	0	1	0	0	0	7986	1348	47	2	2315	2	KANK4	1	62740072	Missense_Mutation	SNP	G	TCGA-BP-4804-01A-02D-1373-10		62740072	186510549	1	21059											
SEMA6C	10500	hgsc.bcm.edu	37	1	151112489	151112489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	G	151112489	A	G	151112489	3	3	356	1	0	0	0	0	1	0	0	0	14054	101	4	3	2760	3	SEMA6C	1	151112489	Missense_Mutation	SNP	A	TCGA-BP-4804-01A-02D-1373-10	88372417	151112489	98138132	2	21060											
UBAP2L	9898	hgsc.bcm.edu	37	1	154218831	154218831	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	C	154218831	A	C	154218831	3	2	356	1	0	0	0	0	1	0	0	0	16850	159	6	5	1032	5	UBAP2L	1	154218831	Missense_Mutation	SNP	A	TCGA-BP-4804-01A-02D-1373-10	3106342	154218831	95031790	3	21061											
ODC1	4953	hgsc.bcm.edu	37	2	10583632	10583632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	A	10583632	C	A	10583632	3	1	356	1	0	0	0	0	1	0	0	0	10832	478	17	4	759	4	ODC1	2	10583632	Missense_Mutation	SNP	C	TCGA-BP-4804-01A-02D-1373-10		10583632	232615741	4	21062											
STAT1	6772	hgsc.bcm.edu	37	2	191862646	191862646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	A	191862646	G	A	191862646	3	1	356	1	0	0	0	0	1	0	0	0	15276	1086	38	1	1603	1	STAT1	2	191862646	Missense_Mutation	SNP	G	TCGA-BP-4804-01A-02D-1373-10	181279014	191862646	51336727	5	21063											
FARP2	9855	hgsc.bcm.edu	37	2	242429386	242429386	+	Missense_Mutation	SNP	A	A	G	rs150907406	alternate_allele	TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	G	242429386	A	G	242429386	3	3	356	1	0	0	0	0	1	0	0	0	5684	72	3	3	2513	3	FARP2	2	242429386	Missense_Mutation	SNP	A	TCGA-BP-4804-01A-02D-1373-10	50566740	242429386	769987	6	21064											
UBP1	7342	hgsc.bcm.edu	37	3	33450220	33450220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	A	33450220	G	A	33450220	3	1	356	1	0	0	0	0	1	0	0	0	16907	1203	42	2	769	2	UBP1	3	33450220	Missense_Mutation	SNP	G	TCGA-BP-4804-01A-02D-1373-10		33450220	164572210	7	21065											
PDIA5	10954	hgsc.bcm.edu	37	3	122849455	122849455	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	C	122849455	A	C	122849455	3	2	356	1	0	0	0	0	1	0	0	0	11678	159	6	5	944	5	PDIA5	3	122849455	Missense_Mutation	SNP	A	TCGA-BP-4804-01A-02D-1373-10	89399235	122849455	75172975	8	21066											
OSMR	9180	hgsc.bcm.edu;ucsc.edu	37	5	38886147	38886147	+	Silent	SNP	T	T	G	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	G	38886147	T	G	38886147	2	3	356	1	0	0	0	0	0	0	0	1	11299	1567	55	5		5	OSMR	5	38886147	Silent	SNP	T	TCGA-BP-4804-01A-02D-1373-10		38886147	142029113	9	21067											
DDX41	51428	hgsc.bcm.edu;ucsc.edu	37	5	176942816	176942816	+	Silent	SNP	A	A	G	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	G	176942816	A	G	176942816	2	3	356	1	0	0	0	0	0	0	0	1	4363	291	11	3		3	DDX41	5	176942816	Silent	SNP	A	TCGA-BP-4804-01A-02D-1373-10	138056669	176942816	3972444	10	21068											
HIST1H1A	3024	hgsc.bcm.edu	37	6	26017707	26017707	+	Missense_Mutation	SNP	A	A	G	rs150074424		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	G	26017707	A	G	26017707	3	3	356	1	0	0	0	0	1	0	0	0	7129	188	7	3	397	3	HIST1H1A	6	26017707	Missense_Mutation	SNP	A	TCGA-BP-4804-01A-02D-1373-10		26017707	145097360	11	21069											
ZAN	7455	hgsc.bcm.edu	37	7	100371474	100371474	+	Missense_Mutation	SNP	G	G	A	rs78193191	bycluster;byfrequency;by1000genomes	TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	A	100371474	G	A	100371474	3	1	356	1	0	0	0	0	1	0	0	0	17525	1145	40	1	5883	1	ZAN	7	100371474	Missense_Mutation	SNP	G	TCGA-BP-4804-01A-02D-1373-10		100371474	58767189	12	21070											
ADAM28	10863	hgsc.bcm.edu	37	8	24192996	24192996	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	T	24192996	A	T	24192996	3	4	356	1	0	0	0	0	1	0	0	0	246	333	12	5	1463	5	ADAM28	8	24192996	Missense_Mutation	SNP	A	TCGA-BP-4804-01A-02D-1373-10		24192996	122171026	13	21071											
TLR4	7099	hgsc.bcm.edu	37	9	120475463	120475463	+	Missense_Mutation	SNP	C	C	T	rs148638298		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	T	120475463	C	T	120475463	3	4	356	1	0	0	0	0	1	0	0	0	15965	913	32	2	1067	2	TLR4	9	120475463	Missense_Mutation	SNP	C	TCGA-BP-4804-01A-02D-1373-10		120475463	20737968	14	21072											
FAM179B	23116	hgsc.bcm.edu	37	14	45514043	45514043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	A	45514043	C	A	45514043	3	1	356	1	0	0	0	0	1	0	0	0	5510	710	25	4	4174	4	FAM179B	14	45514043	Missense_Mutation	SNP	C	TCGA-BP-4804-01A-02D-1373-10		45514043	61835497	15	21073											
SYNE2	23224	hgsc.bcm.edu	37	14	64450489	64450489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	G	64450489	A	G	64450489	3	3	356	1	0	0	0	0	1	0	0	0	15458	333	12	3	2102	3	SYNE2	14	64450489	Missense_Mutation	SNP	A	TCGA-BP-4804-01A-02D-1373-10	18936446	64450489	42899051	16	21074											
AQR	9716	hgsc.bcm.edu	37	15	35202458	35202458	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	T	35202458	A	T	35202458	3	4	356	1	0	0	0	0	1	0	0	0	835	101	4	5	2992	5	AQR	15	35202458	Missense_Mutation	SNP	A	TCGA-BP-4804-01A-02D-1373-10		35202458	67328934	17	21075											
MAP2K5	5607	hgsc.bcm.edu	37	15	68099075	68099075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	G	68099075	A	G	68099075	3	3	356	1	0	0	0	0	1	0	0	0	9247	188	7	3	1420	3	MAP2K5	15	68099075	Missense_Mutation	SNP	A	TCGA-BP-4804-01A-02D-1373-10	32896617	68099075	34432317	18	21076											
LARP6	55323	hgsc.bcm.edu	37	15	71124525	71124525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	T	71124525	G	T	71124525	3	4	356	1	0	0	0	0	1	0	0	0	8639	1232	43	4	137	4	LARP6	15	71124525	Missense_Mutation	SNP	G	TCGA-BP-4804-01A-02D-1373-10	3025450	71124525	31406867	19	21077											
SERPINB4	6318	hgsc.bcm.edu	37	18	61306561	61306561	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	C	61306561	G	C	61306561	3	2	356	1	0	0	0	0	1	0	0	0	14116	942	33	4	554	4	SERPINB4	18	61306561	Missense_Mutation	SNP	G	TCGA-BP-4804-01A-02D-1373-10		61306561	16770687	20	21078											
ZNF30	90075	hgsc.bcm.edu;ucsc.edu	37	19	35434174	35434174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	C	35434174	T	C	35434174	3	2	356	1	0	0	0	0	1	0	0	0	17842	1551	54	3	321	3	ZNF30	19	35434174	Missense_Mutation	SNP	T	TCGA-BP-4804-01A-02D-1373-10		35434174	23694809	21	21079											
MGAT3	4248	hgsc.bcm.edu	37	22	39883403	39883403	+	Silent	SNP	G	G	C	novel		TCGA-BP-4804-01A-02D-1373-10	TCGA-BP-4804-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d310a284-76e2-41e0-8641-11c3e206c3f4	cc9fe2bf-0a9d-49fa-a4a5-4fc6016b1257	C	39883403	G	C	39883403	2	2	356	1	0	0	0	0	0	0	0	1	9551	1364	48	4		4	MGAT3	22	39883403	Silent	SNP	G	TCGA-BP-4804-01A-02D-1373-10		39883403	11421163	22	21080											
LRRC41	10489	hgsc.bcm.edu	37	1	46744679	46744679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	46744679	T	C	46744679	3	2	357	1	0	0	0	0	1	0	0	0	9006	1696	59	3	145	3	LRRC41	1	46744679	Missense_Mutation	SNP	T	TCGA-BP-4807-01A-01D-1373-10		46744679	202505942	1	21081											
COL11A1	1301	hgsc.bcm.edu	37	1	103496778	103496778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	103496778	A	G	103496778	3	3	357	1	0	0	0	0	1	0	0	0	3669	333	12	3	5155	3	COL11A1	1	103496778	Missense_Mutation	SNP	A	TCGA-BP-4807-01A-01D-1373-10	56752099	103496778	145753843	2	21082											
RBBP5	5929	hgsc.bcm.edu;ucsc.edu	37	1	205084072	205084072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	205084072	C	G	205084072	3	3	357	1	0	0	0	0	1	0	0	0	13115	593	21	4	1601	4	RBBP5	1	205084072	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10	101587294	205084072	44166549	3	21083											
DISP1	84976	hgsc.bcm.edu	37	1	223178162	223178162	+	Silent	SNP	T	T	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	223178162	T	C	223178162	2	2	357	1	0	0	0	0	0	0	0	1	4541	1654	58	3		3	DISP1	1	223178162	Silent	SNP	T	TCGA-BP-4807-01A-01D-1373-10	18094090	223178162	26072459	4	21084											
USP34	9736	hgsc.bcm.edu	37	2	61417437	61417437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	61417437	T	C	61417437	3	2	357	1	0	0	0	0	1	0	0	0	17077	1783	62	3	810	3	USP34	2	61417437	Missense_Mutation	SNP	T	TCGA-BP-4807-01A-01D-1373-10		61417437	181781936	5	21085											
EIF2AK3	9451	hgsc.bcm.edu;ucsc.edu	37	2	88874521	88874521	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	88874521	A	T	88874521	4	4	357	1	0	0	0	0	0	1	0	0	5000	131	5	5	890	5	EIF2AK3	2	88874521	Nonsense_Mutation	SNP	A	TCGA-BP-4807-01A-01D-1373-10	27457084	88874521	154324852	6	21086											
VHL	7428	hgsc.bcm.edu	37	3	10188235	10188236	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	10188236	-	G	10188235	7	5	357	1	0	1	1	0	0	0	0	0	17174	1461	51	0	384	0	VHL	3	10188235	Frame_Shift_Ins	INS	-	TCGA-BP-4807-01A-01D-1373-10		10188235	187834195	7	21087											
IMPDH2	3615	hgsc.bcm.edu;ucsc.edu	37	3	49065754	49065754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	49065754	A	C	49065754	3	2	357	1	0	0	0	0	1	0	0	0	7734	86	3	5	1337	5	IMPDH2	3	49065754	Missense_Mutation	SNP	A	TCGA-BP-4807-01A-01D-1373-10	38877519	49065754	148956676	8	21088											
PRKCD	5580	hgsc.bcm.edu	37	3	53219628	53219628	+	Silent	SNP	C	C	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	53219628	C	T	53219628	2	4	357	1	0	0	0	0	0	0	0	1	12519	610	22	2		2	PRKCD	3	53219628	Silent	SNP	C	TCGA-BP-4807-01A-01D-1373-10	4153874	53219628	144802802	9	21089											
COL25A1	84570	hgsc.bcm.edu;ucsc.edu	37	4	109810856	109810856	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	109810856	C	T	109810856	5	4	357	1	0	0	0	0	0	0	1	0	3686	521	18	2	1196	2	COL25A1	4	109810856	Splice_Site	SNP	C	TCGA-BP-4807-01A-01D-1373-10		109810856	81343420	10	21090											
MTMR12	54545	hgsc.bcm.edu;ucsc.edu	37	5	32268894	32268894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	32268894	T	C	32268894	3	2	357	1	0	0	0	0	1	0	0	0	9948	1580	55	3	1791	3	MTMR12	5	32268894	Missense_Mutation	SNP	T	TCGA-BP-4807-01A-01D-1373-10		32268894	148646366	11	21091											
PARP8	79668	hgsc.bcm.edu	37	5	50093025	50093025	+	Silent	SNP	T	T	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	50093025	T	G	50093025	2	3	357	1	0	0	0	0	0	0	0	1	11472	1828	64	5		5	PARP8	5	50093025	Silent	SNP	T	TCGA-BP-4807-01A-01D-1373-10	17824131	50093025	130822235	12	21092											
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	37	5	139886426	139886426	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	139886426	G	C	139886426	3	2	357	1	0	0	0	0	1	0	0	0	629	942	33	4	3489	4	ANKHD1-EIF4EBP3	5	139886426	Missense_Mutation	SNP	G	TCGA-BP-4807-01A-01D-1373-10	89793401	139886426	41028834	13	21093											
TRDN	10345	hgsc.bcm.edu	37	6	123539746	123539746	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	123539746	T	G	123539746	3	3	357	1	0	0	0	0	1	0	0	0	16480	1848	64	5	3	5	TRDN	6	123539746	Missense_Mutation	SNP	T	TCGA-BP-4807-01A-01D-1373-10		123539746	47575321	14	21094											
LATS1	9113	hgsc.bcm.edu;ucsc.edu	37	6	150001249	150001249	+	Silent	SNP	A	A	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	150001249	A	G	150001249	2	3	357	1	0	0	0	0	0	0	0	1	8653	242	9	3		3	LATS1	6	150001249	Silent	SNP	A	TCGA-BP-4807-01A-01D-1373-10	26461503	150001249	21113818	15	21095											
DAGLB	221955	hgsc.bcm.edu;ucsc.edu	37	7	6474529	6474529	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	6474529	A	T	6474529	4	4	357	1	0	0	0	0	0	1	0	0	4229	372	13	5	1524	5	DAGLB	7	6474529	Nonsense_Mutation	SNP	A	TCGA-BP-4807-01A-01D-1373-10		6474529	152664134	16	21096											
DNAH11	8701	hgsc.bcm.edu;ucsc.edu	37	7	21784607	21784607	+	Silent	SNP	A	A	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	21784607	A	T	21784607	2	4	357	1	0	0	0	0	0	0	0	1	4601	175	7	5		5	DNAH11	7	21784607	Silent	SNP	A	TCGA-BP-4807-01A-01D-1373-10	15310078	21784607	137354056	17	21097											
ZP3	7784	hgsc.bcm.edu	37	7	76071183	76071184	+	Frame_Shift_Ins	INS	-	-	G	rs3215870	bycluster	TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	76071184	-	G	76071183	7	5	357	1	0	1	1	0	0	0	0	0	18229	1696	59	0	1115	0	ZP3	7	76071183	Frame_Shift_Ins	INS	-	TCGA-BP-4807-01A-01D-1373-10	54286576	76071183	83067480	18	21098											
ZAN	7455	hgsc.bcm.edu	37	7	100353014	100353016	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	ACA	ACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	-	100353016	ACA	-	100353014	7	5	357	1	0	1	0	1	0	0	0	0	17525	391	14	0	3344	0	ZAN	7	100353014	In_Frame_Del	DEL	ACA	TCGA-BP-4807-01A-01D-1373-10	24281831	100353014	58785649	19	21099											
DPYSL2	1808	hgsc.bcm.edu	37	8	26505237	26505238	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	TA	26505238	-	TA	26505237	7	5	357	1	0	1	1	0	0	0	0	0	4749	1493	52	0	1244	0	DPYSL2	8	26505237	Frame_Shift_Ins	INS	-	TCGA-BP-4807-01A-01D-1373-10		26505237	119858785	20	21100											
CHD7	55636	hgsc.bcm.edu	37	8	61743043	61743043	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	61743043	C	G	61743043	3	3	357	1	0	0	0	0	1	0	0	0	3332	913	32	4	3739	4	CHD7	8	61743043	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10	35237806	61743043	84620979	21	21101											
CNBD1	168975	hgsc.bcm.edu	37	8	88297032	88297032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	88297032	A	G	88297032	3	3	357	1	0	0	0	0	1	0	0	0	3593	15	1	3	924	3	CNBD1	8	88297032	Missense_Mutation	SNP	A	TCGA-BP-4807-01A-01D-1373-10	26553989	88297032	58066990	22	21102											
ZNF572	137209	hgsc.bcm.edu	37	8	125987897	125987897	+	Silent	SNP	A	A	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	125987897	A	G	125987897	2	3	357	1	0	0	0	0	0	0	0	1	18016	11	1	3		3	ZNF572	8	125987897	Silent	SNP	A	TCGA-BP-4807-01A-01D-1373-10	37690865	125987897	20376125	23	21103											
MRPL50	54534	hgsc.bcm.edu	37	9	104152751	104152752	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	TA	104152752	-	TA	104152751	7	5	357	1	0	1	1	0	0	0	0	0	9821	1024	36	0	6	0	MRPL50	9	104152751	Frame_Shift_Ins	INS	-	TCGA-BP-4807-01A-01D-1373-10		104152751	37060680	24	21104											
SPTAN1	6709	hgsc.bcm.edu	37	9	131343279	131343279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	131343279	G	T	131343279	3	4	357	1	0	0	0	0	1	0	0	0	15129	1174	41	4	1440	4	SPTAN1	9	131343279	Missense_Mutation	SNP	G	TCGA-BP-4807-01A-01D-1373-10	27190528	131343279	9870152	25	21105											
MYO3A	53904	hgsc.bcm.edu	37	10	26385321	26385321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	26385321	A	G	26385321	3	3	357	1	0	0	0	0	1	0	0	0	10083	101	4	3	1628	3	MYO3A	10	26385321	Missense_Mutation	SNP	A	TCGA-BP-4807-01A-01D-1373-10		26385321	109149426	26	21106											
CTNNA3	29119	hgsc.bcm.edu;ucsc.edu	37	10	67726369	67726369	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	A	67726369	C	A	67726369	5	1	357	1	0	0	0	0	0	0	1	0	4016	492	17	4	294	4	CTNNA3	10	67726369	Splice_Site	SNP	C	TCGA-BP-4807-01A-01D-1373-10	41341048	67726369	67808378	27	21107											
OR52D1	390066	hgsc.bcm.edu	37	11	5510540	5510541	+	Frame_Shift_Ins	INS	-	-	GGCT	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	GGCT	5510541	-	GGCT	5510540	7	5	357	1	0	1	1	0	0	0	0	0	11121	1348	47	0	606	0	OR52D1	11	5510540	Frame_Shift_Ins	INS	-	TCGA-BP-4807-01A-01D-1373-10		5510540	129495976	28	21108											
AMPD3	272	hgsc.bcm.edu	37	11	10517135	10517135	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	10517135	G	C	10517135	3	2	357	1	0	0	0	0	1	0	0	0	587	1175	41	4	1366	4	AMPD3	11	10517135	Missense_Mutation	SNP	G	TCGA-BP-4807-01A-01D-1373-10	5006595	10517135	124489381	29	21109											
OR5T1	390155	hgsc.bcm.edu	37	11	56043250	56043253	+	Frame_Shift_Del	DEL	ATCT	ATCT	-	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	ATCT	ATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	-	56043253	ATCT	-	56043250	7	5	357	1	0	1	0	1	0	0	0	0	11188	101	4	0	138	0	OR5T1	11	56043250	Frame_Shift_Del	DEL	ATCT	TCGA-BP-4807-01A-01D-1373-10	45526115	56043250	78963266	30	21110											
SNX15	29907	hgsc.bcm.edu	37	11	64799918	64799918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	64799918	C	T	64799918	3	4	357	1	0	0	0	0	1	0	0	0	14899	759	27	1	161	1	SNX15	11	64799918	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10	8756668	64799918	70206598	31	21111											
RBM14	10432	hgsc.bcm.edu	37	11	66392311	66392312	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	-	66392312	GC	-	66392311	7	5	357	1	0	1	0	1	0	0	0	0	13128	1203	42	0	970	0	RBM14	11	66392311	Frame_Shift_Del	DEL	GC	TCGA-BP-4807-01A-01D-1373-10	1592393	66392311	68614205	32	21112											
BIRC3	330	hgsc.bcm.edu	37	11	102206736	102206736	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	102206736	T	G	102206736	3	3	357	1	0	0	0	0	1	0	0	0	1436	1841	64	5	1386	5	BIRC3	11	102206736	Missense_Mutation	SNP	T	TCGA-BP-4807-01A-01D-1373-10	35814425	102206736	32799780	33	21113											
GSG1	83445	hgsc.bcm.edu	37	12	13241706	13241706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	13241706	A	G	13241706	3	3	357	1	0	0	0	0	1	0	0	0	6827	246	9	3	657	3	GSG1	12	13241706	Missense_Mutation	SNP	A	TCGA-BP-4807-01A-01D-1373-10		13241706	120610189	34	21114											
MLL2	8085	hgsc.bcm.edu	37	12	49442448	49442448	+	Silent	SNP	T	T	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	49442448	T	C	49442448	2	2	357	1	0	0	0	0	0	0	0	1	9628	1741	61	3		3	MLL2	12	49442448	Silent	SNP	T	TCGA-BP-4807-01A-01D-1373-10	36200742	49442448	84409447	35	21115											
DCN	1634	hgsc.bcm.edu;ucsc.edu	37	12	91550907	91550907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	A	91550907	C	A	91550907	3	1	357	1	0	0	0	0	1	0	0	0	4299	826	29	4	498	4	DCN	12	91550907	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10	42108459	91550907	42300988	36	21116											
MAP4K5	11183	hgsc.bcm.edu	37	14	50943023	50943023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	A	50943023	C	A	50943023	3	1	357	1	0	0	0	0	1	0	0	0	9270	521	18	4	2264	4	MAP4K5	14	50943023	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10		50943023	56406517	37	21117											
DYNC1H1	1778	hgsc.bcm.edu;ucsc.edu	37	14	102516872	102516872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	A	102516872	G	A	102516872	3	1	357	1	0	0	0	0	1	0	0	0	4843	1116	39	1	14223	1	DYNC1H1	14	102516872	Missense_Mutation	SNP	G	TCGA-BP-4807-01A-01D-1373-10	51573849	102516872	4832668	38	21118											
FMN1	342184	hgsc.bcm.edu;ucsc.edu	37	15	33261563	33261563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	A	33261563	C	A	33261563	3	1	357	1	0	0	0	0	1	0	0	0	5956	507	18	4	1976	4	FMN1	15	33261563	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10		33261563	69269829	39	21119											
THBS1	7057	hgsc.bcm.edu	37	15	39887564	39887564	+	Silent	SNP	T	T	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	39887564	T	C	39887564	2	2	357	1	0	0	0	0	0	0	0	1	15865	1449	50	3		3	THBS1	15	39887564	Silent	SNP	T	TCGA-BP-4807-01A-01D-1373-10	6626001	39887564	62643828	40	21120											
FBN1	2200	hgsc.bcm.edu;ucsc.edu	37	15	48780624	48780624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	48780624	C	T	48780624	3	4	357	1	0	0	0	0	1	0	0	0	5709	797	28	2	5630	2	FBN1	15	48780624	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10	8893060	48780624	53750768	41	21121											
SCAMP2	10066	hgsc.bcm.edu	37	15	75143007	75143007	+	Silent	SNP	T	T	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	75143007	T	G	75143007	2	3	357	1	0	0	0	0	0	0	0	1	13884	1567	55	5		5	SCAMP2	15	75143007	Silent	SNP	T	TCGA-BP-4807-01A-01D-1373-10	26362383	75143007	27388385	42	21122											
SEPHS2	22928	hgsc.bcm.edu	37	16	30456532	30456532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	30456532	T	C	30456532	3	2	357	1	0	0	0	0	1	0	0	0	14068	1464	51	3	833	3	SEPHS2	16	30456532	Missense_Mutation	SNP	T	TCGA-BP-4807-01A-01D-1373-10		30456532	59898221	43	21123											
TMCO7	0	hgsc.bcm.edu;ucsc.edu	37	16	68893912	68893912	+	Silent	SNP	A	A	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	68893912	A	C	68893912	2	2	357	1	0	0	0	0	0	0	0	1	16013	64	3	5		5	TMCO7	16	68893912	Silent	SNP	A	TCGA-BP-4807-01A-01D-1373-10	38437380	68893912	21460841	44	21124											
MTHFSD	64779	hgsc.bcm.edu	37	16	86575780	86575780	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	A	86575780	T	A	86575780	3	1	357	1	0	0	0	0	1	0	0	0	9940	1783	62	5	681	5	MTHFSD	16	86575780	Missense_Mutation	SNP	T	TCGA-BP-4807-01A-01D-1373-10	17681868	86575780	3778973	45	21125											
SPAG5	10615	hgsc.bcm.edu;ucsc.edu	37	17	26911463	26911463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	26911463	C	G	26911463	3	3	357	1	0	0	0	0	1	0	0	0	14994	855	30	4	1436	4	SPAG5	17	26911463	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10		26911463	54283747	46	21126											
RNF135	84282	hgsc.bcm.edu;ucsc.edu	37	17	29311739	29311739	+	Silent	SNP	A	A	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	29311739	A	T	29311739	2	4	357	1	0	0	0	0	0	0	0	1	13453	175	7	5		5	RNF135	17	29311739	Silent	SNP	A	TCGA-BP-4807-01A-01D-1373-10	2400276	29311739	51883471	47	21127											
TOP2A	7153	hgsc.bcm.edu;ucsc.edu	37	17	38556798	38556798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	38556798	C	T	38556798	3	4	357	1	0	0	0	0	1	0	0	0	16377	536	19	1	1869	1	TOP2A	17	38556798	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10	9245059	38556798	42638412	48	21128											
CLTC	1213	hgsc.bcm.edu	37	17	57763101	57763101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	57763101	T	G	57763101	3	3	357	1	0	0	0	0	1	0	0	0	3568	1464	51	5	4877	5	CLTC	17	57763101	Missense_Mutation	SNP	T	TCGA-BP-4807-01A-01D-1373-10	19206303	57763101	23432109	49	21129											
LRRC45	201255	hgsc.bcm.edu;ucsc.edu	37	17	79986136	79986136	+	Silent	SNP	C	C	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	79986136	C	T	79986136	2	4	357	1	0	0	0	0	0	0	0	1	9009	842	30	2		2	LRRC45	17	79986136	Silent	SNP	C	TCGA-BP-4807-01A-01D-1373-10	22223035	79986136	1209074	50	21130											
ATP8B3	148229	hgsc.bcm.edu	37	19	1783237	1783239	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	-	1783239	CTC	-	1783237	7	5	357	1	0	1	0	1	0	0	0	0	1196	912	32	0	213	0	ATP8B3	19	1783237	In_Frame_Del	DEL	CTC	TCGA-BP-4807-01A-01D-1373-10		1783237	57345746	51	21131											
MUC16	94025	hgsc.bcm.edu	37	19	9047853	9047853	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	9047853	G	C	9047853	3	2	357	1	0	0	0	0	1	0	0	0	9980	1203	42	4	10065	4	MUC16	19	9047853	Missense_Mutation	SNP	G	TCGA-BP-4807-01A-01D-1373-10	7264616	9047853	50081130	52	21132											
ZNF433	163059	hgsc.bcm.edu	37	19	12126886	12126886	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	12126886	A	C	12126886	3	2	357	1	0	0	0	0	1	0	0	0	17919	246	9	5	1229	5	ZNF433	19	12126886	Missense_Mutation	SNP	A	TCGA-BP-4807-01A-01D-1373-10	3079033	12126886	47002097	53	21133											
IL27RA	9466	hgsc.bcm.edu;ucsc.edu	37	19	14157032	14157032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	T	14157032	C	T	14157032	3	4	357	1	0	0	0	0	1	0	0	0	7688	855	30	2	861	2	IL27RA	19	14157032	Missense_Mutation	SNP	C	TCGA-BP-4807-01A-01D-1373-10	2030146	14157032	44971951	54	21134											
CARD8	22900	hgsc.bcm.edu	37	19	48735017	48735018	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	TT	48735018	-	TT	48735017	7	5	357	1	0	1	1	0	0	0	0	0	2653	565	20	0	1199	0	CARD8	19	48735017	Frame_Shift_Ins	INS	-	TCGA-BP-4807-01A-01D-1373-10	34577985	48735017	10393966	55	21135											
NLRP11	204801	hgsc.bcm.edu	37	19	56320980	56320980	+	Silent	SNP	G	G	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	56320980	G	C	56320980	2	2	357	1	0	0	0	0	0	0	0	1	10480	1045	37	4		4	NLRP11	19	56320980	Silent	SNP	G	TCGA-BP-4807-01A-01D-1373-10	7585963	56320980	2808003	56	21136											
SON	6651	hgsc.bcm.edu;ucsc.edu	37	21	34929511	34929511	+	Silent	SNP	T	T	C	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	C	34929511	T	C	34929511	2	2	357	1	0	0	0	0	0	0	0	1	14939	1702	59	3		3	SON	21	34929511	Silent	SNP	T	TCGA-BP-4807-01A-01D-1373-10		34929511	13200384	57	21137											
LAMP2	3920	hgsc.bcm.edu;ucsc.edu	37	X	119562465	119562465	+	Silent	SNP	A	A	G	novel		TCGA-BP-4807-01A-01D-1373-10	TCGA-BP-4807-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	c0faca5d-acc8-4d08-828a-a38a6fa41b67	e319f0fd-0382-4169-9d41-5c159cb280da	G	119562465	A	G	119562465	2	3	357	1	0	0	0	0	0	0	0	1	8625	175	7	3		3	LAMP2	23	119562465	Silent	SNP	A	TCGA-BP-4807-01A-01D-1373-10		119562465	35708095	58	21138											
SEPN1	57190	hgsc.bcm.edu;ucsc.edu	37	1	26136292	26136293	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	-	26136293	CT	-	26136292	7	5	358	1	0	1	0	1	0	0	0	0	14069	797	28	0	1017	0	SEPN1	1	26136292	Frame_Shift_Del	DEL	CT	TCGA-BP-4960-01A-01D-1462-08		26136292	223114329	1	21139											
HSPB11	51668	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54405733	54405733	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	54405733	A	T	54405733	3	4	358	1	0	0	0	0	1	0	0	0	7426	188	7	5	431	5	HSPB11	1	54405733	Missense_Mutation	SNP	A	TCGA-BP-4960-01A-01D-1462-08	28269441	54405733	194844888	2	21140											
LRRIQ3	127255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	74575231	74575231	+	Silent	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	74575231	C	T	74575231	2	4	358	1	0	0	0	0	0	0	0	1	9037	465	17	2		2	LRRIQ3	1	74575231	Silent	SNP	C	TCGA-BP-4960-01A-01D-1462-08	20169498	74575231	174675390	3	21141											
LPHN2	23266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	82408996	82408996	+	Silent	SNP	T	T	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	82408996	T	C	82408996	2	2	358	1	0	0	0	0	0	0	0	1	8923	1471	51	3		3	LPHN2	1	82408996	Silent	SNP	T	TCGA-BP-4960-01A-01D-1462-08	7833765	82408996	166841625	4	21142											
PPM1J	333926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	113255367	113255367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	113255367	A	G	113255367	3	3	358	1	0	0	0	0	1	0	0	0	12352	231	8	3	821	3	PPM1J	1	113255367	Missense_Mutation	SNP	A	TCGA-BP-4960-01A-01D-1462-08	30846371	113255367	135995254	5	21143											
LRIG2	9860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	113657274	113657274	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	113657274	C	G	113657274	3	3	358	1	0	0	0	0	1	0	0	0	8952	913	32	4	2364	4	LRIG2	1	113657274	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	401907	113657274	135593347	6	21144											
OR6K2	81448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158670021	158670021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	158670021	G	T	158670021	3	4	358	1	0	0	0	0	1	0	0	0	11209	1261	44	4	556	4	OR6K2	1	158670021	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	45012747	158670021	90580600	7	21145											
TBX19	9095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	168260459	168260459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	168260459	C	T	168260459	3	4	358	1	0	0	0	0	1	0	0	0	15666	681	24	2	271	2	TBX19	1	168260459	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	9590438	168260459	80990162	8	21146											
TNR	7143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	175365838	175365838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	175365838	G	A	175365838	3	1	358	1	0	0	0	0	1	0	0	0	16350	1116	39	1	3070	1	TNR	1	175365838	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	7105379	175365838	73884783	9	21147											
NUP133	55746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	229641823	229641823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	229641823	G	T	229641823	3	4	358	1	0	0	0	0	1	0	0	0	10761	1174	41	4	3305	4	NUP133	1	229641823	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	54275985	229641823	19608798	10	21148											
MBOAT2	129642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	9048798	9048798	+	Silent	SNP	A	A	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	9048798	A	C	9048798	2	2	358	1	0	0	0	0	0	0	0	1	9364	291	11	5		5	MBOAT2	2	9048798	Silent	SNP	A	TCGA-BP-4960-01A-01D-1462-08		9048798	234150575	11	21149											
ASB3	51130	hgsc.bcm.edu;ucsc.edu	37	2	53956692	53956697	+	In_Frame_Del	DEL	TGTCCA	TGTCCA	-	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	TGTCCA	TGTCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	-	53956697	TGTCCA	-	53956692	7	5	358	1	0	1	0	1	0	0	0	0	1024	1580	55	0	1213	0	ASB3	2	53956692	In_Frame_Del	DEL	TGTCCA	TCGA-BP-4960-01A-01D-1462-08	44907894	53956692	189242681	12	21150											
ALMS1	7840	hgsc.bcm.edu;ucsc.edu	37	2	73717436	73717437	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	73717437	-	A	73717436	7	5	358	1	0	1	1	0	0	0	0	0	535	943	33	0	8385	0	ALMS1	2	73717436	Frame_Shift_Ins	INS	-	TCGA-BP-4960-01A-01D-1462-08	19760744	73717436	169481937	13	21151											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191480	10191480	+	Missense_Mutation	SNP	T	T	C	rs121913346	alternate_allele	TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	10191480	T	C	10191480	3	2	358	1	0	0	0	0	1	0	0	0	17174	1580	55	3	483	3	VHL	3	10191480	Missense_Mutation	SNP	T	TCGA-BP-4960-01A-01D-1462-08		10191480	187830950	14	21152											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52649377	52649377	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	-	52649377	T	-	52649377	7	5	358	1	0	1	0	1	0	0	0	0	11498	1722	60	0	3050	0	PBRM1	3	52649377	Frame_Shift_Del	DEL	T	TCGA-BP-4960-01A-01D-1462-08	42457897	52649377	145373053	15	21153											
ADAMTS9	56999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	64589693	64589693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	64589693	C	T	64589693	3	4	358	1	0	0	0	0	1	0	0	0	273	826	29	2	2215	2	ADAMTS9	3	64589693	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	11940316	64589693	133432737	16	21154											
NEK11	79858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130748629	130748629	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	130748629	C	G	130748629	3	3	358	1	0	0	0	0	1	0	0	0	10330	710	25	4	79	4	NEK11	3	130748629	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	66158936	130748629	67273801	17	21155											
PIK3CA	5290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	bycluster	TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	178952085	A	T	178952085	3	4	358	1	0	0	0	0	1	0	0	0	11920	217	8	5	3218	5	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-BP-4960-01A-01D-1462-08	48203456	178952085	19070345	18	21156											
PGM2	55276	hgsc.bcm.edu;ucsc.edu	37	4	37845989	37845989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	37845989	G	A	37845989	3	1	358	1	0	0	0	0	1	0	0	0	11805	1145	40	1	750	1	PGM2	4	37845989	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08		37845989	153308287	19	21157											
SEC31A	22872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83770070	83770070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	83770070	G	T	83770070	3	4	358	1	0	0	0	0	1	0	0	0	14011	1377	48	4	1305	4	SEC31A	4	83770070	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	45924081	83770070	107384206	20	21158											
TMEM144	55314	hgsc.bcm.edu	37	4	159138559	159138560	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	159138560	-	G	159138559	7	5	358	1	0	1	1	0	0	0	0	0	16070	1580	55	0	329	0	TMEM144	4	159138559	Frame_Shift_Ins	INS	-	TCGA-BP-4960-01A-01D-1462-08	75368489	159138559	32015717	21	21159											
OXCT1	5019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	41794778	41794778	+	Splice_Site	SNP	C	C	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	41794778	C	G	41794778	5	3	358	1	0	0	0	0	0	0	1	0	11336	521	18	4	413	4	OXCT1	5	41794778	Splice_Site	SNP	C	TCGA-BP-4960-01A-01D-1462-08		41794778	139120482	22	21160											
ISL1	3670	hgsc.bcm.edu	37	5	50685624	50685624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	50685624	C	T	50685624	3	4	358	1	0	0	0	0	1	0	0	0	7863	768	27	1	637	1	ISL1	5	50685624	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	8890846	50685624	130229636	23	21161											
GPX8	493869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	54456928	54456928	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	54456928	T	G	54456928	3	3	358	1	0	0	0	0	1	0	0	0	6753	1821	63	5	317	5	GPX8	5	54456928	Missense_Mutation	SNP	T	TCGA-BP-4960-01A-01D-1462-08	3771304	54456928	126458332	24	21162											
GPR98	84059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	89941846	89941846	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	89941846	T	G	89941846	3	3	358	1	0	0	0	0	1	0	0	0	6728	1696	59	5	3022	5	GPR98	5	89941846	Missense_Mutation	SNP	T	TCGA-BP-4960-01A-01D-1462-08	35484918	89941846	90973414	25	21163											
PCDHA9	9752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140230065	140230065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	140230065	C	T	140230065	3	4	358	1	0	0	0	0	1	0	0	0	11538	536	19	1	1987	1	PCDHA9	5	140230065	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	50288219	140230065	40685195	26	21164											
CPEB4	80315	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	173372085	173372085	+	Silent	SNP	A	A	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	173372085	A	G	173372085	2	3	358	1	0	0	0	0	0	0	0	1	3805	301	11	3		3	CPEB4	5	173372085	Silent	SNP	A	TCGA-BP-4960-01A-01D-1462-08	33142020	173372085	7543175	27	21165											
FAM136B	0	broad.mit.edu	37	6	3045892	3045892	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	3045892	G	G	3045892	3	3	358	1	0	0	0	0	1	0	0	0	5455	333	12	3	277	3	FAM136B	6	3045892	Missense_Mutation	SNP	A	TCGA-BP-4960-01A-01D-1462-08		3045892	168069175	28	21166											
HDGFL1	154150	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	22569865	22569865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	22569865	G	T	22569865	3	4	358	1	0	0	0	0	1	0	0	0	7026	1232	43	4	63	4	HDGFL1	6	22569865	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	19523973	22569865	148545202	29	21167											
SNX14	57231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	86258079	86258079	+	Silent	SNP	A	A	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	86258079	A	T	86258079	2	4	358	1	0	0	0	0	0	0	0	1	14898	349	13	5		5	SNX14	6	86258079	Silent	SNP	A	TCGA-BP-4960-01A-01D-1462-08	63688214	86258079	84856988	30	21168											
LAMA4	3910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	112471821	112471821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	112471821	C	T	112471821	3	4	358	1	0	0	0	0	1	0	0	0	8615	835	29	2	3498	2	LAMA4	6	112471821	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	26213742	112471821	58643246	31	21169											
PLG	5340	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	161139402	161139402	+	Silent	SNP	T	T	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	161139402	T	A	161139402	2	1	358	1	0	0	0	0	0	0	0	1	12093	1567	55	5		5	PLG	6	161139402	Silent	SNP	T	TCGA-BP-4960-01A-01D-1462-08	48667581	161139402	9975665	32	21170											
COL1A2	1278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94059617	94059617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	94059617	G	A	94059617	3	1	358	1	0	0	0	0	1	0	0	0	3680	1087	38	1	4219	1	COL1A2	7	94059617	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08		94059617	65079046	33	21171											
STRA8	346673	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134928142	134928142	+	Silent	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	134928142	C	T	134928142	2	4	358	1	0	0	0	0	0	0	0	1	15335	709	25	2		2	STRA8	7	134928142	Silent	SNP	C	TCGA-BP-4960-01A-01D-1462-08	40868525	134928142	24210521	34	21172											
ZNF395	55893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	28214212	28214212	+	Silent	SNP	A	A	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	28214212	A	G	28214212	2	3	358	1	0	0	0	0	0	0	0	1	17893	291	11	3		3	ZNF395	8	28214212	Silent	SNP	A	TCGA-BP-4960-01A-01D-1462-08		28214212	118149810	35	21173											
MCM4	4173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	48874107	48874107	+	Silent	SNP	T	T	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	48874107	T	A	48874107	2	1	358	1	0	0	0	0	0	0	0	1	9396	1538	54	5		5	MCM4	8	48874107	Silent	SNP	T	TCGA-BP-4960-01A-01D-1462-08	20659895	48874107	97489915	36	21174											
ADHFE1	137872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67357547	67357547	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	-	67357547	A	-	67357547	7	5	358	1	0	1	0	1	0	0	0	0	314	362	13	0	470	0	ADHFE1	8	67357547	Frame_Shift_Del	DEL	A	TCGA-BP-4960-01A-01D-1462-08	18483440	67357547	79006475	37	21175											
SLC1A1	6505	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	4576614	4576614	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	4576614	C	G	4576614	3	3	358	1	0	0	0	0	1	0	0	0	14444	506	18	4	1082	4	SLC1A1	9	4576614	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08		4576614	136636817	38	21176											
TRPM3	80036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	73477850	73477850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	73477850	C	A	73477850	4	1	358	1	0	0	0	0	0	1	0	0	16599	690	24	4	4902	4	TRPM3	9	73477850	Nonsense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	68901236	73477850	67735581	39	21177											
GCNT1	2650	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	79118325	79118325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	79118325	A	G	79118325	3	3	358	1	0	0	0	0	1	0	0	0	6307	333	12	3	1030	3	GCNT1	9	79118325	Missense_Mutation	SNP	A	TCGA-BP-4960-01A-01D-1462-08	5640475	79118325	62095106	40	21178											
ATAD1	84896	broad.mit.edu;hgsc.bcm.edu	37	10	89550085	89550085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	89550085	G	T	89550085	3	4	358	1	0	0	0	0	1	0	0	0	1070	971	34	4	749	4	ATAD1	10	89550085	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08		89550085	45984662	41	21179											
KIF20B	9585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	91528517	91528517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	91528517	A	C	91528517	3	2	358	1	0	0	0	0	1	0	0	0	8294	72	3	5	5112	5	KIF20B	10	91528517	Missense_Mutation	SNP	A	TCGA-BP-4960-01A-01D-1462-08	1978432	91528517	44006230	42	21180											
NLRP6	171389	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	281411	281411	+	Silent	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	281411	C	T	281411	2	4	358	1	0	0	0	0	0	0	0	1	10488	874	31	1		1	NLRP6	11	281411	Silent	SNP	C	TCGA-BP-4960-01A-01D-1462-08		281411	134725105	43	21181											
TNKS1BP1	85456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57068043	57068043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	57068043	C	A	57068043	3	1	358	1	0	0	0	0	1	0	0	0	16332	797	28	4	32	4	TNKS1BP1	11	57068043	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	56786632	57068043	77938473	44	21182											
CTNND1	1500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57563067	57563067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	57563067	T	G	57563067	3	3	358	1	0	0	0	0	1	0	0	0	4021	1406	49	5	296	5	CTNND1	11	57563067	Missense_Mutation	SNP	T	TCGA-BP-4960-01A-01D-1462-08	495024	57563067	77443449	45	21183											
NRXN2	9379	hgsc.bcm.edu;ucsc.edu	37	11	64428577	64428577	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	64428577	G	C	64428577	3	2	358	1	0	0	0	0	1	0	0	0	10673	933	33	4	3630	4	NRXN2	11	64428577	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	6865510	64428577	70577939	46	21184											
HTR3A	3359	hgsc.bcm.edu;ucsc.edu	37	11	113857420	113857420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	113857420	C	T	113857420	3	4	358	1	0	0	0	0	1	0	0	0	7451	739	26	2	956	2	HTR3A	11	113857420	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08	49428843	113857420	21149096	47	21185											
ATP8A2	51761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	26104186	26104186	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	26104186	C	G	26104186	3	3	358	1	0	0	0	0	1	0	0	0	1193	711	25	4	281	4	ATP8A2	13	26104186	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08		26104186	89065692	48	21186											
NYNRIN	57523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24885951	24885951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	24885951	C	A	24885951	3	1	358	1	0	0	0	0	1	0	0	0	10803	710	25	4	5026	4	NYNRIN	14	24885951	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08		24885951	82463589	49	21187											
KHNYN	23351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24901665	24901665	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	24901665	T	A	24901665	3	1	358	1	0	0	0	0	1	0	0	0	8157	1464	51	5	1204	5	KHNYN	14	24901665	Missense_Mutation	SNP	T	TCGA-BP-4960-01A-01D-1462-08	15714	24901665	82447875	50	21188											
ACTN1	87	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	69349271	69349271	+	Silent	SNP	C	C	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	69349271	C	G	69349271	2	3	358	1	0	0	0	0	0	0	0	1	204	639	23	4		4	ACTN1	14	69349271	Silent	SNP	C	TCGA-BP-4960-01A-01D-1462-08	44447606	69349271	38000269	51	21189											
BTBD7	55727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	93709191	93709191	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	93709191	G	C	93709191	3	2	358	1	0	0	0	0	1	0	0	0	1548	1174	41	4	575	4	BTBD7	14	93709191	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	24359920	93709191	13640349	52	21190											
TLN2	83660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63125718	63125718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	63125718	C	A	63125718	3	1	358	1	0	0	0	0	1	0	0	0	15960	680	24	4	7224	4	TLN2	15	63125718	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08		63125718	39405674	53	21191											
ZWILCH	55055	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	66797733	66797733	+	RNA	SNP	A	A	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	66797733	A	C	66797733	1	2	358	0	1	0	0	0	0	0	0	0	18260	319	11	5		5	ZWILCH	15	66797733	RNA	SNP	A	TCGA-BP-4960-01A-01D-1462-08	3672015	66797733	35733659	54	21192											
ITGA11	22801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	68596122	68596122	+	Silent	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	68596122	C	T	68596122	2	4	358	1	0	0	0	0	0	0	0	1	7881	581	21	2		2	ITGA11	15	68596122	Silent	SNP	C	TCGA-BP-4960-01A-01D-1462-08	1798389	68596122	33935270	55	21193											
FHOD1	29109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67264329	67264329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	67264329	A	G	67264329	3	3	358	1	0	0	0	0	1	0	0	0	5889	188	7	3	571	3	FHOD1	16	67264329	Missense_Mutation	SNP	A	TCGA-BP-4960-01A-01D-1462-08		67264329	23090424	56	21194											
TMEM231	79583	broad.mit.edu	37	16	75590097	75590097	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	75590097	G	G	75590097	3	3	358	1	0	0	0	0	1	0	0	0	16161	1406	49	5	1060	5	TMEM231	16	75590097	Missense_Mutation	SNP	T	TCGA-BP-4960-01A-01D-1462-08	8325768	75590097	14764656	57	21195											
ZNF594	84622	broad.mit.edu;hgsc.bcm.edu	37	17	5086351	5086351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	5086351	C	T	5086351	3	4	358	1	0	0	0	0	1	0	0	0	18036	922	32	2	1226	2	ZNF594	17	5086351	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08		5086351	76108859	58	21196											
RCVRN	5957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	9808162	9808162	+	Silent	SNP	G	G	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	9808162	G	A	9808162	2	1	358	1	0	0	0	0	0	0	0	1	13199	1136	40	1		1	RCVRN	17	9808162	Silent	SNP	G	TCGA-BP-4960-01A-01D-1462-08	4721811	9808162	71387048	59	21197											
NOS2	4843	broad.mit.edu;hgsc.bcm.edu	37	17	26086097	26086097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	26086097	T	C	26086097	3	2	358	1	0	0	0	0	1	0	0	0	10550	1406	49	3	305	3	NOS2	17	26086097	Missense_Mutation	SNP	T	TCGA-BP-4960-01A-01D-1462-08	16277935	26086097	55109113	60	21198											
NOL11	25926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	65730487	65730487	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	65730487	T	A	65730487	3	1	358	1	0	0	0	0	1	0	0	0	10528	1551	54	5	892	5	NOL11	17	65730487	Missense_Mutation	SNP	T	TCGA-BP-4960-01A-01D-1462-08	39644390	65730487	15464723	61	21199											
TRIM65	201292	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73888859	73888859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	73888859	G	A	73888859	3	1	358	1	0	0	0	0	1	0	0	0	16551	1087	38	1	1086	1	TRIM65	17	73888859	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	8158372	73888859	7306351	62	21200											
ABCA7	10347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1051287	1051287	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	G	1051287	C	G	1051287	3	3	358	1	0	0	0	0	1	0	0	0	37	681	24	4	2892	4	ABCA7	19	1051287	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08		1051287	58077696	63	21201											
UHRF1	29128	broad.mit.edu;hgsc.bcm.edu	37	19	4954476	4954476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	4954476	G	T	4954476	3	4	358	1	0	0	0	0	1	0	0	0	16979	1232	43	4	2022	4	UHRF1	19	4954476	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	3903189	4954476	54174507	64	21202											
LASS4	0	hgsc.bcm.edu;ucsc.edu	37	19	8322833	8322835	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	-	8322835	TCT	-	8322833	7	5	358	1	0	1	0	1	0	0	0	0	8648	1667	58	0	842	0	LASS4	19	8322833	In_Frame_Del	DEL	TCT	TCGA-BP-4960-01A-01D-1462-08	3368357	8322833	50806150	65	21203											
PGLYRP2	114770	broad.mit.edu;hgsc.bcm.edu	37	19	15586606	15586606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	15586606	G	A	15586606	3	1	358	1	0	0	0	0	1	0	0	0	11801	1232	43	2	871	2	PGLYRP2	19	15586606	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	7263773	15586606	43542377	66	21204											
MAST3	23031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18254635	18254635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	T	18254635	G	T	18254635	3	4	358	1	0	0	0	0	1	0	0	0	9333	1261	44	4	2397	4	MAST3	19	18254635	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	2668029	18254635	40874348	67	21205											
CEACAM4	1089	hgsc.bcm.edu;ucsc.edu	37	19	42132122	42132123	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	-	42132123	CC	-	42132122	7	5	358	1	0	1	0	1	0	0	0	0	3196	739	26	0	481	0	CEACAM4	19	42132122	Frame_Shift_Del	DEL	CC	TCGA-BP-4960-01A-01D-1462-08	23877487	42132122	16996861	68	21206											
PRKCG	5582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54395811	54395811	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	54395811	G	A	54395811	4	1	358	1	0	0	0	0	0	1	0	0	12522	1241	43	2	761	2	PRKCG	19	54395811	Nonsense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	12263689	54395811	4733172	69	21207											
TNNT1	7138	broad.mit.edu	37	19	55645564	55645564	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	55645564	C	C	55645564	3	2	358	1	0	0	0	0	1	0	0	0	16342	942	33	4	228	4	TNNT1	19	55645564	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	1249753	55645564	3483419	70	21208											
PARD6B	84612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	49367004	49367004	+	Silent	SNP	T	T	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	49367004	T	C	49367004	2	2	358	1	0	0	0	0	0	0	0	1	11453	1461	51	3		3	PARD6B	20	49367004	Silent	SNP	T	TCGA-BP-4960-01A-01D-1462-08		49367004	13658516	71	21209											
C2CD2	25966	broad.mit.edu	37	21	43338331	43338331	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	43338331	A	A	43338331	3	1	358	1	0	0	0	0	1	0	0	0	2154	680	24	4	1527	4	C2CD2	21	43338331	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08		43338331	4791564	72	21210											
LSS	4047	broad.mit.edu	37	21	47629493	47629493	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	47629493	C	C	47629493	3	2	358	1	0	0	0	0	1	0	0	0	9072	971	34	4	997	4	LSS	21	47629493	Missense_Mutation	SNP	G	TCGA-BP-4960-01A-01D-1462-08	4291162	47629493	500402	73	21211											
ZDHHC8	29801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	20130731	20130731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	A	20130731	C	A	20130731	3	1	358	1	0	0	0	0	1	0	0	0	17633	738	26	4	1616	4	ZDHHC8	22	20130731	Missense_Mutation	SNP	C	TCGA-BP-4960-01A-01D-1462-08		20130731	31173835	74	21212											
GPC4	2239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	132437029	132437029	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4960-01A-01D-1462-08	TCGA-BP-4960-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	36d21be3-2f46-47af-84aa-2305f2513aa1	3bcb9c19-2edf-45a0-8889-6b066351e8ef	C	132437029	A	C	132437029	3	2	358	1	0	0	0	0	1	0	0	0	6607	420	15	5	137	5	GPC4	23	132437029	Missense_Mutation	SNP	A	TCGA-BP-4960-01A-01D-1462-08		132437029	22833531	75	21213											
VHL	7428	hgsc.bcm.edu	37	3	10183725	10183725	+	Nonsense_Mutation	SNP	C	C	A	rs5030826		TCGA-BP-4961-01A-01D-1392-10	TCGA-BP-4961-11A-01D-1392-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	a121fc07-a7cd-4561-8cff-de1d3af81e5b	de2de206-b708-4406-9b05-5573e729213a	A	10183725	C	A	10183725	4	1	359	1	0	0	0	0	0	1	0	0	17174	893	31	4	196	4	VHL	3	10183725	Nonsense_Mutation	SNP	C	TCGA-BP-4961-01A-01D-1392-10		10183725	187838705	1	21214											
C1orf173	127254	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	75037720	75037720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	75037720	C	T	75037720	3	4	360	1	0	0	0	0	1	0	0	0	2016	855	30	2	922	2	C1orf173	1	75037720	Missense_Mutation	SNP	C	TCGA-BP-4961-01A-01D-1462-08		75037720	174212901	1	21215											
DNTTIP2	30836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94343391	94343391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	94343391	G	T	94343391	3	4	360	1	0	0	0	0	1	0	0	0	4684	1319	46	4	2194	4	DNTTIP2	1	94343391	Missense_Mutation	SNP	G	TCGA-BP-4961-01A-01D-1462-08	19305671	94343391	154907230	2	21216											
KCND3	3752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	112524490	112524490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	112524490	C	T	112524490	3	4	360	1	0	0	0	0	1	0	0	0	8027	536	19	1	1136	1	KCND3	1	112524490	Missense_Mutation	SNP	C	TCGA-BP-4961-01A-01D-1462-08	18181099	112524490	136726131	3	21217											
HMGCS2	3158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	120307117	120307117	+	Silent	SNP	C	C	A	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	A	120307117	C	A	120307117	2	1	360	1	0	0	0	0	0	0	0	1	7240	581	21	4		4	HMGCS2	1	120307117	Silent	SNP	C	TCGA-BP-4961-01A-01D-1462-08	7782627	120307117	128943504	4	21218											
RFX5	5993	hgsc.bcm.edu	37	1	151315565	151315566	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	C	151315566	-	C	151315565	7	5	360	1	0	1	1	0	0	0	0	0	13279	1538	54	0	906	0	RFX5	1	151315565	Frame_Shift_Ins	INS	-	TCGA-BP-4961-01A-01D-1462-08	31008448	151315565	97935056	5	21219											
ZBTB41	360023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197169423	197169423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	C	197169423	T	C	197169423	3	2	360	1	0	0	0	0	1	0	0	0	17555	1559	54	3	2588	3	ZBTB41	1	197169423	Missense_Mutation	SNP	T	TCGA-BP-4961-01A-01D-1462-08	45853858	197169423	52081198	6	21220											
PTPN4	5775	hgsc.bcm.edu;ucsc.edu	37	2	120690059	120690060	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	A	120690060	-	A	120690059	7	5	360	1	0	1	1	0	0	0	0	0	12803	838	29	0	1180	0	PTPN4	2	120690059	Frame_Shift_Ins	INS	-	TCGA-BP-4961-01A-01D-1462-08		120690059	122509314	7	21221											
VHL	7428	broad.mit.edu	37	3	10183714	10183720	+	Frame_Shift_Del	DEL	CGTGCTG	-	-	rs5030651	alternate_allele	TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	CGTGCTG	CGTGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	-	10183720	-	-	10183714	7	5	360	1	0	1	0	1	0	0	0	0	17174	639	23	0	185	0	VHL	3	10183714	Frame_Shift_Del	DEL	CGTGCTG	TCGA-BP-4961-01A-01D-1462-08		10183714	187838716	8	21222											
WNT7A	7476	broad.mit.edu	37	3	13921263	13921263	+	Silent	SNP	G	T	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	13921263	T	T	13921263	2	4	360	1	0	0	0	0	0	0	0	1	17406	1306	46	4		4	WNT7A	3	13921263	Silent	SNP	G	TCGA-BP-4961-01A-01D-1462-08	3737549	13921263	184101167	9	21223											
MAP4	4134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47957988	47957988	+	Silent	SNP	C	C	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	47957988	C	T	47957988	2	4	360	1	0	0	0	0	0	0	0	1	9265	680	24	2		2	MAP4	3	47957988	Silent	SNP	C	TCGA-BP-4961-01A-01D-1462-08	34036725	47957988	150064442	10	21224											
SLC12A2	6558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127466804	127466804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	127466804	G	T	127466804	3	4	360	1	0	0	0	0	1	0	0	0	14396	1261	44	4	1112	4	SLC12A2	5	127466804	Missense_Mutation	SNP	G	TCGA-BP-4961-01A-01D-1462-08		127466804	53448456	11	21225											
FSTL4	23105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	132585226	132585226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	G	132585226	A	G	132585226	3	3	360	1	0	0	0	0	1	0	0	0	6086	159	6	3	1798	3	FSTL4	5	132585226	Missense_Mutation	SNP	A	TCGA-BP-4961-01A-01D-1462-08	5118422	132585226	48330034	12	21226											
MAGI2	9863	hgsc.bcm.edu;ucsc.edu	37	7	78131009	78131010	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	C	78131010	-	C	78131009	7	5	360	1	0	1	1	0	0	0	0	0	9198	1792	62	0	3589	0	MAGI2	7	78131009	Frame_Shift_Ins	INS	-	TCGA-BP-4961-01A-01D-1462-08		78131009	81007654	13	21227											
COPG2	26958	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	130295934	130295934	+	Silent	SNP	A	A	G	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	G	130295934	A	G	130295934	2	3	360	1	0	0	0	0	0	0	0	1	3734	117	5	3		3	COPG2	7	130295934	Silent	SNP	A	TCGA-BP-4961-01A-01D-1462-08	52164925	130295934	28842729	14	21228											
MLL3	58508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151851228	151851228	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	151851228	G	T	151851228	4	4	360	1	0	0	0	0	0	1	0	0	9629	1294	45	4	2640	4	MLL3	7	151851228	Nonsense_Mutation	SNP	G	TCGA-BP-4961-01A-01D-1462-08	21555294	151851228	7287435	15	21229											
GPAA1	8733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145138388	145138388	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	C	145138388	G	C	145138388	3	2	360	1	0	0	0	0	1	0	0	0	6594	933	33	4	361	4	GPAA1	8	145138388	Missense_Mutation	SNP	G	TCGA-BP-4961-01A-01D-1462-08		145138388	1225634	16	21230											
ASTN2	23245	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	119802150	119802150	+	Silent	SNP	A	A	G	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	G	119802150	A	G	119802150	2	3	360	1	0	0	0	0	0	0	0	1	1065	273	10	3		3	ASTN2	9	119802150	Silent	SNP	A	TCGA-BP-4961-01A-01D-1462-08		119802150	21411281	17	21231											
KIF20B	9585	broad.mit.edu;hgsc.bcm.edu	37	10	91476196	91476196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	C	91476196	T	C	91476196	3	2	360	1	0	0	0	0	1	0	0	0	8294	1522	53	3	974	3	KIF20B	10	91476196	Missense_Mutation	SNP	T	TCGA-BP-4961-01A-01D-1462-08		91476196	44058551	18	21232											
RRP12	23223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99120376	99120376	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	A	99120376	C	A	99120376	5	1	360	1	0	0	0	0	0	0	1	0	13699	927	32	4	342	4	RRP12	10	99120376	Splice_Site	SNP	C	TCGA-BP-4961-01A-01D-1462-08	7644180	99120376	36414371	19	21233											
HSPA12A	259217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	118464696	118464696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	G	118464696	A	G	118464696	3	3	360	1	0	0	0	0	1	0	0	0	7411	72	3	3	1847	3	HSPA12A	10	118464696	Missense_Mutation	SNP	A	TCGA-BP-4961-01A-01D-1462-08	19344320	118464696	17070051	20	21234											
OSBPL5	114879	broad.mit.edu	37	11	3150289	3150289	+	Silent	SNP	C	T	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	3150289	T	T	3150289	2	4	360	1	0	0	0	0	0	0	0	1	11287	842	30	2		2	OSBPL5	11	3150289	Silent	SNP	C	TCGA-BP-4961-01A-01D-1462-08		3150289	131856227	21	21235											
MARK2	2011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63668343	63668343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	A	63668343	G	A	63668343	3	1	360	1	0	0	0	0	1	0	0	0	9320	1116	39	1	1018	1	MARK2	11	63668343	Missense_Mutation	SNP	G	TCGA-BP-4961-01A-01D-1462-08	60518054	63668343	71338173	22	21236											
EFEMP2	30008	hgsc.bcm.edu;ucsc.edu	37	11	65637667	65637667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	65637667	C	T	65637667	3	4	360	1	0	0	0	0	1	0	0	0	4944	536	19	1	823	1	EFEMP2	11	65637667	Missense_Mutation	SNP	C	TCGA-BP-4961-01A-01D-1462-08	1969324	65637667	69368849	23	21237											
PCF11	51585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	82877718	82877718	+	Silent	SNP	T	T	C	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	C	82877718	T	C	82877718	2	2	360	1	0	0	0	0	0	0	0	1	11580	1567	55	3		3	PCF11	11	82877718	Silent	SNP	T	TCGA-BP-4961-01A-01D-1462-08	17240051	82877718	52128798	24	21238											
ZNF770	54989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	35274804	35274804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	35274804	A	T	35274804	3	4	360	1	0	0	0	0	1	0	0	0	18155	333	12	5	1247	5	ZNF770	15	35274804	Missense_Mutation	SNP	A	TCGA-BP-4961-01A-01D-1462-08		35274804	67256588	25	21239											
MYO9A	4649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	72300251	72300251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	C	72300251	G	C	72300251	3	2	360	1	0	0	0	0	1	0	0	0	10091	932	33	4	6490	4	MYO9A	15	72300251	Missense_Mutation	SNP	G	TCGA-BP-4961-01A-01D-1462-08	37025447	72300251	30231141	26	21240											
ACAN	176	broad.mit.edu;hgsc.bcm.edu	37	15	89395179	89395179	+	Silent	SNP	T	T	A	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	A	89395179	T	A	89395179	2	1	360	1	0	0	0	0	0	0	0	1	117	1567	55	5		5	ACAN	15	89395179	Silent	SNP	T	TCGA-BP-4961-01A-01D-1462-08	17094928	89395179	13136213	27	21241											
ANPEP	290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90340889	90340889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	G	90340889	A	G	90340889	3	3	360	1	0	0	0	0	1	0	0	0	710	391	14	3	857	3	ANPEP	15	90340889	Missense_Mutation	SNP	A	TCGA-BP-4961-01A-01D-1462-08	945710	90340889	12190503	28	21242											
VWA3A	146177	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	22162103	22162103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	A	22162103	G	A	22162103	3	1	360	1	0	0	0	0	1	0	0	0	17252	1029	36	2	3335	2	VWA3A	16	22162103	Missense_Mutation	SNP	G	TCGA-BP-4961-01A-01D-1462-08		22162103	68192650	29	21243											
CHD3	1107	broad.mit.edu;hgsc.bcm.edu	37	17	7806304	7806304	+	Silent	SNP	C	C	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	7806304	C	T	7806304	2	4	360	1	0	0	0	0	0	0	0	1	3328	726	26	2		2	CHD3	17	7806304	Silent	SNP	C	TCGA-BP-4961-01A-01D-1462-08		7806304	73388906	30	21244											
FLCN	201163	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	17119744	17119744	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	-	17119744	A	-	17119744	7	5	360	1	0	1	0	1	0	0	0	0	5928	246	9	0	505	0	FLCN	17	17119744	Frame_Shift_Del	DEL	A	TCGA-BP-4961-01A-01D-1462-08	9313440	17119744	64075466	31	21245											
IMP5	0	hgsc.bcm.edu;ucsc.edu	37	17	43923077	43923077	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	-	43923077	C	-	43923077	7	5	360	1	0	1	0	1	0	0	0	0	7728	796	28	0	807	0	IMP5	17	43923077	Frame_Shift_Del	DEL	C	TCGA-BP-4961-01A-01D-1462-08	26803333	43923077	37272133	32	21246											
ACOX1	51	hgsc.bcm.edu	37	17	73946942	73946942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	A	73946942	C	A	73946942	3	1	360	1	0	0	0	0	1	0	0	0	158	710	25	4	795	4	ACOX1	17	73946942	Missense_Mutation	SNP	C	TCGA-BP-4961-01A-01D-1462-08	30023865	73946942	7248268	33	21247											
MC5R	4161	hgsc.bcm.edu;ucsc.edu	37	18	13826006	13826006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	T	13826006	C	T	13826006	3	4	360	1	0	0	0	0	1	0	0	0	9374	768	27	1	244	1	MC5R	18	13826006	Missense_Mutation	SNP	C	TCGA-BP-4961-01A-01D-1462-08		13826006	64251242	34	21248											
CXXC1	30827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	47808972	47808972	+	Silent	SNP	G	G	A	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	A	47808972	G	A	47808972	2	1	360	1	0	0	0	0	0	0	0	1	4099	1103	39	1		1	CXXC1	18	47808972	Silent	SNP	G	TCGA-BP-4961-01A-01D-1462-08	33982966	47808972	30268276	35	21249											
SERPINB5	5268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	61154215	61154215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	A	61154215	G	A	61154215	3	1	360	1	0	0	0	0	1	0	0	0	14117	1349	47	2	211	2	SERPINB5	18	61154215	Missense_Mutation	SNP	G	TCGA-BP-4961-01A-01D-1462-08	13345243	61154215	16923033	36	21250											
SUPT5H	6829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39964875	39964875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	C	39964875	T	C	39964875	3	2	360	1	0	0	0	0	1	0	0	0	15411	1652	57	3	2755	3	SUPT5H	19	39964875	Missense_Mutation	SNP	T	TCGA-BP-4961-01A-01D-1462-08		39964875	19164108	37	21251											
FAM116B	0	broad.mit.edu;hgsc.bcm.edu	37	22	50752245	50752245	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4961-01A-01D-1462-08	TCGA-BP-4961-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2b3d42d-a775-4dfd-8d26-276487654093	f94e3b28-7dfa-4eae-98b3-9f133e05c91b	G	50752245	T	G	50752245	3	3	360	1	0	0	0	0	1	0	0	0	5412	1821	63	5	584	5	FAM116B	22	50752245	Missense_Mutation	SNP	T	TCGA-BP-4961-01A-01D-1462-08		50752245	552321	38	21252											
SLC45A1	50651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	8390936	8390936	+	Silent	SNP	C	C	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	8390936	C	T	8390936	2	4	361	1	0	0	0	0	0	0	0	1	14653	535	19	1		1	SLC45A1	1	8390936	Silent	SNP	C	TCGA-BP-4962-01A-01D-1462-08		8390936	240859685	1	21253											
NCDN	23154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36026446	36026446	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	C	36026446	G	C	36026446	3	2	361	1	0	0	0	0	1	0	0	0	10221	971	34	4	704	4	NCDN	1	36026446	Missense_Mutation	SNP	G	TCGA-BP-4962-01A-01D-1462-08	27635510	36026446	213224175	2	21254											
CLASP1	23332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	122273322	122273322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	G	122273322	A	G	122273322	3	3	361	1	0	0	0	0	1	0	0	0	3456	449	16	3	4241	3	CLASP1	2	122273322	Missense_Mutation	SNP	A	TCGA-BP-4962-01A-01D-1462-08		122273322	120926051	3	21255											
TANC1	85461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160035470	160035470	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	G	160035470	C	G	160035470	3	3	361	1	0	0	0	0	1	0	0	0	15556	478	17	4	2352	4	TANC1	2	160035470	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08	37762148	160035470	83163903	4	21256											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179452123	179452123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	C	179452123	T	C	179452123	3	2	361	1	0	0	0	0	1	0	0	0	16747	1435	50	3	44388	3	TTN	2	179452123	Missense_Mutation	SNP	T	TCGA-BP-4962-01A-01D-1462-08	19416653	179452123	63747250	5	21257											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52443892	52443892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	52443892	C	T	52443892	3	4	361	1	0	0	0	0	1	0	0	0	1311	826	29	2	2254	2	BAP1	3	52443892	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08		52443892	145578538	6	21258											
CHRD	8646	broad.mit.edu;ucsc.edu	37	3	184103856	184103856	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	G	184103856	G	G	184103856	3	3	361	1	0	0	0	0	1	0	0	0	3374	1580	55	5	1899	5	CHRD	3	184103856	Missense_Mutation	SNP	T	TCGA-BP-4962-01A-01D-1462-08	131659964	184103856	13918574	7	21259											
MFI2	4241	broad.mit.edu	37	3	196733606	196733606	+	Silent	SNP	G	T	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	196733606	T	T	196733606	2	4	361	1	0	0	0	0	0	0	0	1	9529	1217	42	4		4	MFI2	3	196733606	Silent	SNP	G	TCGA-BP-4962-01A-01D-1462-08	12629750	196733606	1288824	8	21260											
SPEF2	79925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	35771808	35771808	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	C	35771808	A	C	35771808	3	2	361	1	0	0	0	0	1	0	0	0	15047	14	1	5	4026	5	SPEF2	5	35771808	Missense_Mutation	SNP	A	TCGA-BP-4962-01A-01D-1462-08		35771808	145143452	9	21261											
SPINK5	11005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147481422	147481422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	147481422	C	A	147481422	3	1	361	1	0	0	0	0	1	0	0	0	15074	623	22	4	1439	4	SPINK5	5	147481422	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08	111709614	147481422	33433838	10	21262	255	2									
SPINK5	11005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147481423	147481423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	147481423	C	A	147481423	3	1	361	1	0	0	0	0	1	0	0	0	15074	594	21	4	1440	4	SPINK5	5	147481423	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08	1	147481423	33433837	11	21263	255	2									
NIPAL4	348938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	156899742	156899742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	156899742	C	T	156899742	3	4	361	1	0	0	0	0	1	0	0	0	10434	893	31	1	1197	1	NIPAL4	5	156899742	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08	9418319	156899742	24015518	12	21264											
ABCA13	154664	broad.mit.edu;ucsc.edu	37	7	48411895	48411895	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	48411895	A	A	48411895	3	1	361	1	0	0	0	0	1	0	0	0	31	971	34	2	10893	2	ABCA13	7	48411895	Missense_Mutation	SNP	G	TCGA-BP-4962-01A-01D-1462-08		48411895	110726768	13	21265											
SEMA3A	10371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	83590955	83590955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	83590955	C	T	83590955	3	4	361	1	0	0	0	0	1	0	0	0	14037	855	30	2	271	2	SEMA3A	7	83590955	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08	35179060	83590955	75547708	14	21266											
SMARCA2	6595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	2056787	2056787	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	2056787	A	T	2056787	3	4	361	1	0	0	0	0	1	0	0	0	14782	304	11	5	1311	5	SMARCA2	9	2056787	Missense_Mutation	SNP	A	TCGA-BP-4962-01A-01D-1462-08		2056787	139156644	15	21267											
DBH	1621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136505100	136505100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	136505100	G	A	136505100	3	1	361	1	0	0	0	0	1	0	0	0	4252	1174	41	2	478	2	DBH	9	136505100	Missense_Mutation	SNP	G	TCGA-BP-4962-01A-01D-1462-08	134448313	136505100	4708331	16	21268											
CCDC88B	283234	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64108611	64108611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	64108611	C	T	64108611	3	4	361	1	0	0	0	0	1	0	0	0	2866	507	18	2	363	2	CCDC88B	11	64108611	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08		64108611	70897905	17	21269											
FAM55B	0	broad.mit.edu;ucsc.edu	37	11	114569272	114569272	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	114569272	A	A	114569272	3	1	361	1	0	0	0	0	1	0	0	0	5592	1000	35	2	648	2	FAM55B	11	114569272	Missense_Mutation	SNP	G	TCGA-BP-4962-01A-01D-1462-08	50460661	114569272	20437244	18	21270	256	2									
FAM55B	0	broad.mit.edu;ucsc.edu	37	11	114569274	114569274	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	G	114569274	G	G	114569274	3	3	361	1	0	0	0	0	1	0	0	0	5592	333	12	3	650	3	FAM55B	11	114569274	Missense_Mutation	SNP	A	TCGA-BP-4962-01A-01D-1462-08	2	114569274	20437242	19	21271	256	2									
SIDT2	51092	broad.mit.edu;hgsc.bcm.edu	37	11	117052642	117052642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	117052642	C	A	117052642	3	1	361	1	0	0	0	0	1	0	0	0	14316	507	18	4	435	4	SIDT2	11	117052642	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08	2483368	117052642	17953874	20	21272											
SOX5	6660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	23818384	23818384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	23818384	C	T	23818384	3	4	361	1	0	0	0	0	1	0	0	0	14967	603	21	2	1412	2	SOX5	12	23818384	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08		23818384	110033511	21	21273											
ARL11	115761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	50204841	50204841	+	Silent	SNP	C	C	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	50204841	C	T	50204841	2	4	361	1	0	0	0	0	0	0	0	1	927	547	19	1		1	ARL11	13	50204841	Silent	SNP	C	TCGA-BP-4962-01A-01D-1462-08		50204841	64965037	22	21274											
MGA	23269	hgsc.bcm.edu;ucsc.edu	37	15	41961876	41961876	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	-	41961876	G	-	41961876	7	5	361	1	0	1	0	1	0	0	0	0	9547	1348	47	0	786	0	MGA	15	41961876	Frame_Shift_Del	DEL	G	TCGA-BP-4962-01A-01D-1462-08		41961876	60569516	23	21275											
ACAN	176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89386810	89386810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	89386810	G	A	89386810	3	1	361	1	0	0	0	0	1	0	0	0	117	1145	40	1	1000	1	ACAN	15	89386810	Missense_Mutation	SNP	G	TCGA-BP-4962-01A-01D-1462-08	47424934	89386810	13144582	24	21276											
SALL1	6299	hgsc.bcm.edu;ucsc.edu	37	16	51172715	51172716	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	51172716	-	A	51172715	7	5	361	1	0	1	1	0	0	0	0	0	13823	594	21	0	564	0	SALL1	16	51172715	Frame_Shift_Ins	INS	-	TCGA-BP-4962-01A-01D-1462-08		51172715	39182038	25	21277											
CMIP	80790	broad.mit.edu	37	16	81712128	81712128	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	C	81712128	C	C	81712128	3	2	361	1	0	0	0	0	1	0	0	0	3580	1551	54	3	1343	3	CMIP	16	81712128	Missense_Mutation	SNP	T	TCGA-BP-4962-01A-01D-1462-08	30539413	81712128	8642625	26	21278											
KIAA0664	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	2606746	2606746	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	2606746	A	T	2606746	3	4	361	1	0	0	0	0	1	0	0	0	8196	159	6	5	3798	5	KIAA0664	17	2606746	Missense_Mutation	SNP	A	TCGA-BP-4962-01A-01D-1462-08		2606746	78588464	27	21279											
SLC26A11	284129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78199688	78199688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	G	78199688	A	G	78199688	3	3	361	1	0	0	0	0	1	0	0	0	14529	159	6	3	580	3	SLC26A11	17	78199688	Missense_Mutation	SNP	A	TCGA-BP-4962-01A-01D-1462-08	75592942	78199688	2995522	28	21280											
PTPRM	5797	broad.mit.edu	37	18	8253332	8253332	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	8253332	A	A	8253332	3	1	361	1	0	0	0	0	1	0	0	0	12819	1087	38	1	2748	1	PTPRM	18	8253332	Missense_Mutation	SNP	G	TCGA-BP-4962-01A-01D-1462-08		8253332	69823916	29	21281											
FECH	2235	broad.mit.edu;ucsc.edu	37	18	55221616	55221616	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	55221616	T	T	55221616	3	4	361	1	0	0	0	0	1	0	0	0	5815	942	33	4	330	4	FECH	18	55221616	Missense_Mutation	SNP	G	TCGA-BP-4962-01A-01D-1462-08	46968284	55221616	22855632	30	21282											
ECSIT	51295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11618611	11618611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	11618611	G	T	11618611	3	4	361	1	0	0	0	0	1	0	0	0	4902	1000	35	4	456	4	ECSIT	19	11618611	Missense_Mutation	SNP	G	TCGA-BP-4962-01A-01D-1462-08		11618611	47510372	31	21283											
ERCC1	2067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45923622	45923622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	45923622	C	T	45923622	3	4	361	1	0	0	0	0	1	0	0	0	5214	884	31	1	665	1	ERCC1	19	45923622	Missense_Mutation	SNP	C	TCGA-BP-4962-01A-01D-1462-08	34305011	45923622	13205361	32	21284											
GRIK1	2897	broad.mit.edu;hgsc.bcm.edu	37	21	31023608	31023608	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	T	31023608	A	T	31023608	3	4	361	1	0	0	0	0	1	0	0	0	6780	69	3	5	2180	5	GRIK1	21	31023608	Missense_Mutation	SNP	A	TCGA-BP-4962-01A-01D-1462-08		31023608	17106287	33	21285											
SYNJ1	8867	broad.mit.edu;ucsc.edu	37	21	34011316	34011316	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	A	34011316	A	A	34011316	4	1	361	1	0	0	0	0	0	1	0	0	15464	1299	45	2	937	2	SYNJ1	21	34011316	Nonsense_Mutation	SNP	G	TCGA-BP-4962-01A-01D-1462-08	2987708	34011316	14118579	34	21286											
NONO	4841	broad.mit.edu;hgsc.bcm.edu	37	X	70511743	70511743	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4962-01A-01D-1462-08	TCGA-BP-4962-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3454a6fe-2547-4531-a0be-cb27c1879e72	bb91bd89-bf58-47f8-a5fc-e54adf4264f8	G	70511743	T	G	70511743	3	3	361	1	0	0	0	0	1	0	0	0	10541	1464	51	5	275	5	NONO	23	70511743	Missense_Mutation	SNP	T	TCGA-BP-4962-01A-01D-1462-08		70511743	84758817	35	21287											
MMEL1	79258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	2541226	2541226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	2541226	C	T	2541226	3	4	362	1	0	0	0	0	1	0	0	0	9653	826	29	2	2082	2	MMEL1	1	2541226	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08		2541226	246709395	1	21288											
UBXN11	91544	broad.mit.edu	37	1	26623424	26623424	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	G	26623424	G	G	26623424	3	3	362	1	0	0	0	0	1	0	0	0	16925	507	18	4	1180	4	UBXN11	1	26623424	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08	24082198	26623424	222627197	2	21289											
CC2D1B	200014	hgsc.bcm.edu	37	1	52824974	52824975	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	G	52824975	-	G	52824974	7	5	362	1	0	1	1	0	0	0	0	0	2729	1567	55	0	1562	0	CC2D1B	1	52824974	Frame_Shift_Ins	INS	-	TCGA-BP-4963-01A-01D-1462-08	26201550	52824974	196425647	3	21290											
LEPR	3953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	66067338	66067338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	66067338	C	T	66067338	3	4	362	1	0	0	0	0	1	0	0	0	8735	826	29	2	1284	2	LEPR	1	66067338	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08	13242364	66067338	183183283	4	21291											
RPRD2	23248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150432593	150432593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	150432593	C	T	150432593	3	4	362	1	0	0	0	0	1	0	0	0	13630	478	17	2	1245	2	RPRD2	1	150432593	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08	84365255	150432593	98818028	5	21292											
SLC39A1	27173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153932643	153932643	+	Silent	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	153932643	C	T	153932643	2	4	362	1	0	0	0	0	0	0	0	1	14625	854	30	2		2	SLC39A1	1	153932643	Silent	SNP	C	TCGA-BP-4963-01A-01D-1462-08	3500050	153932643	95317978	6	21293											
SLC25A44	9673	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156169881	156169881	+	Silent	SNP	C	C	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	156169881	C	A	156169881	2	1	362	1	0	0	0	0	0	0	0	1	14522	668	24	4		4	SLC25A44	1	156169881	Silent	SNP	C	TCGA-BP-4963-01A-01D-1462-08	2237238	156169881	93080740	7	21294											
SLAMF7	57823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160718025	160718025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	160718025	G	A	160718025	3	1	362	1	0	0	0	0	1	0	0	0	14382	1145	40	1	103	1	SLAMF7	1	160718025	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	4548144	160718025	88532596	8	21295											
MPZL1	9019	broad.mit.edu;hgsc.bcm.edu	37	1	167734877	167734877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	167734877	A	C	167734877	3	2	362	1	0	0	0	0	1	0	0	0	9756	101	4	5	155	5	MPZL1	1	167734877	Missense_Mutation	SNP	A	TCGA-BP-4963-01A-01D-1462-08	7016852	167734877	81515744	9	21296											
ALLC	55821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	3727474	3727474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	3727474	T	C	3727474	3	2	362	1	0	0	0	0	1	0	0	0	534	1667	58	3	202	3	ALLC	2	3727474	Missense_Mutation	SNP	T	TCGA-BP-4963-01A-01D-1462-08		3727474	239471899	10	21297											
MAPRE3	22924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27245101	27245101	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	27245101	G	A	27245101	2	1	362	1	0	0	0	0	0	0	0	1	9303	1364	48	2		2	MAPRE3	2	27245101	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	23517627	27245101	215954272	11	21298											
EIF2AK2	5610	hgsc.bcm.edu;ucsc.edu	37	2	37368712	37368712	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	-	37368712	C	-	37368712	7	5	362	1	0	1	0	1	0	0	0	0	4999	507	18	0	1334	0	EIF2AK2	2	37368712	Frame_Shift_Del	DEL	C	TCGA-BP-4963-01A-01D-1462-08	10123611	37368712	205830661	12	21299											
SMEK2	57223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	55825590	55825590	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	55825590	T	A	55825590	3	1	362	1	0	0	0	0	1	0	0	0	14807	1406	49	5	1722	5	SMEK2	2	55825590	Missense_Mutation	SNP	T	TCGA-BP-4963-01A-01D-1462-08	18456878	55825590	187373783	13	21300											
USP34	9736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61566797	61566797	+	Silent	SNP	A	A	G	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	G	61566797	A	G	61566797	2	3	362	1	0	0	0	0	0	0	0	1	17077	330	12	3		3	USP34	2	61566797	Silent	SNP	A	TCGA-BP-4963-01A-01D-1462-08	5741207	61566797	181632576	14	21301											
ANKRD36	375248	broad.mit.edu	37	2	97864367	97864367	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	-	97864367	-	-	97864367	7	5	362	1	0	1	0	1	0	0	0	0	665	233	9	0	2901	0	ANKRD36	2	97864367	Frame_Shift_Del	DEL	A	TCGA-BP-4963-01A-01D-1462-08	36297570	97864367	145335006	15	21302											
GLI2	2736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	121747767	121747767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	121747767	C	T	121747767	3	4	362	1	0	0	0	0	1	0	0	0	6445	893	31	1	4327	1	GLI2	2	121747767	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08	23883400	121747767	121451606	16	21303											
MARS2	92935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	198571443	198571443	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	198571443	G	A	198571443	2	1	362	1	0	0	0	0	0	0	0	1	9324	1132	40	1		1	MARS2	2	198571443	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	76823676	198571443	44627930	17	21304											
SMARCAL1	50485	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	217280065	217280065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	217280065	G	C	217280065	3	2	362	1	0	0	0	0	1	0	0	0	14786	1029	36	4	640	4	SMARCAL1	2	217280065	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	18708622	217280065	25919308	18	21305											
CUL3	8452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	225368421	225368421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	225368421	G	C	225368421	3	2	362	1	0	0	0	0	1	0	0	0	4058	1377	48	4	1013	4	CUL3	2	225368421	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	8088356	225368421	17830952	19	21306											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191507	10191507	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	-	10191507	G	-	10191507	7	5	362	1	0	1	0	1	0	0	0	0	17174	1116	39	0	510	0	VHL	3	10191507	Frame_Shift_Del	DEL	G	TCGA-BP-4963-01A-01D-1462-08		10191507	187830923	20	21307	257	2									
VHL	7428	hgsc.bcm.edu	37	3	10191509	10191509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	10191509	A	T	10191509	3	4	362	1	0	0	0	0	1	0	0	0	17174	304	11	5	512	5	VHL	3	10191509	Missense_Mutation	SNP	A	TCGA-BP-4963-01A-01D-1462-08	2	10191509	187830921	21	21308	257	2									
SLC35A5	55032	hgsc.bcm.edu;ucsc.edu	37	3	112299395	112299396	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	112299396	-	A	112299395	7	5	362	1	0	1	1	0	0	0	0	0	14587	1000	35	0	449	0	SLC35A5	3	112299395	Frame_Shift_Ins	INS	-	TCGA-BP-4963-01A-01D-1462-08	102107886	112299395	85723035	22	21309											
ZXDC	79364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	126160625	126160625	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	126160625	G	A	126160625	4	1	362	1	0	0	0	0	0	1	0	0	18264	1357	47	2	211	2	ZXDC	3	126160625	Nonsense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	13861230	126160625	71861805	23	21310											
EPHB1	2047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	134967305	134967305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	134967305	A	T	134967305	3	4	362	1	0	0	0	0	1	0	0	0	5176	333	12	5	2698	5	EPHB1	3	134967305	Missense_Mutation	SNP	A	TCGA-BP-4963-01A-01D-1462-08	8806680	134967305	63055125	24	21311											
TP63	8626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	189604291	189604291	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	189604291	G	A	189604291	2	1	362	1	0	0	0	0	0	0	0	1	16404	962	34	2		2	TP63	3	189604291	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	54636986	189604291	8418139	25	21312											
SPZ1	84654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	79616823	79616823	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	79616823	G	A	79616823	2	1	362	1	0	0	0	0	0	0	0	1	15139	962	34	2		2	SPZ1	5	79616823	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08		79616823	101298437	26	21313											
XRCC4	7518	hgsc.bcm.edu;ucsc.edu	37	5	82491622	82491623	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	82491623	-	A	82491622	7	5	362	1	0	1	1	0	0	0	0	0	17467	1291	45	0	359	0	XRCC4	5	82491622	Frame_Shift_Ins	INS	-	TCGA-BP-4963-01A-01D-1462-08	2874799	82491622	98423638	27	21314											
DDX46	9879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134126242	134126242	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	134126242	G	A	134126242	2	1	362	1	0	0	0	0	0	0	0	1	4366	1014	35	2		2	DDX46	5	134126242	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	51634620	134126242	46789018	28	21315											
MBOAT1	154141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	20144501	20144501	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	20144501	G	A	20144501	2	1	362	1	0	0	0	0	0	0	0	1	9363	1280	45	2		2	MBOAT1	6	20144501	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08		20144501	150970566	29	21316											
B3GAT2	135152	broad.mit.edu;ucsc.edu	37	6	71571408	71571408	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	71571408	C	C	71571408	3	2	362	1	0	0	0	0	1	0	0	0	1254	1136	40	4	45	4	B3GAT2	6	71571408	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	51426907	71571408	99543659	30	21317											
RBM16	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	155154022	155154022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	155154022	G	T	155154022	3	4	362	1	0	0	0	0	1	0	0	0	13131	962	34	4	3387	4	RBM16	6	155154022	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	83582614	155154022	15961045	31	21318											
HEATR2	54919	broad.mit.edu;ucsc.edu	37	7	780466	780466	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	780466	T	T	780466	3	4	362	1	0	0	0	0	1	0	0	0	7035	768	27	1	801	1	HEATR2	7	780466	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08		780466	158358197	32	21319											
MYL7	58498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	44179950	44179950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	44179950	G	C	44179950	3	2	362	1	0	0	0	0	1	0	0	0	10060	1165	41	4	273	4	MYL7	7	44179950	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	43399484	44179950	114958713	33	21320											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82583794	82583794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	82583794	G	A	82583794	3	1	362	1	0	0	0	0	1	0	0	0	11590	1348	47	2	9054	2	PCLO	7	82583794	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	38403844	82583794	76554869	34	21321											
DNAJC2	27000	broad.mit.edu;hgsc.bcm.edu	37	7	102982243	102982243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	102982243	T	C	102982243	3	2	362	1	0	0	0	0	1	0	0	0	4641	1464	51	3	1706	3	DNAJC2	7	102982243	Missense_Mutation	SNP	T	TCGA-BP-4963-01A-01D-1462-08	20398449	102982243	56156420	35	21322											
PLXNA4	91584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	131895713	131895713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	131895713	G	T	131895713	3	4	362	1	0	0	0	0	1	0	0	0	12129	1357	47	4	3489	4	PLXNA4	7	131895713	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	28913470	131895713	27242950	36	21323											
CNTNAP2	26047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	146829512	146829512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	146829512	G	A	146829512	3	1	362	1	0	0	0	0	1	0	0	0	3649	1203	42	2	1289	2	CNTNAP2	7	146829512	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	14933799	146829512	12309151	37	21324											
SGK223	157285	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	8185726	8185726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	8185726	C	T	8185726	3	4	362	1	0	0	0	0	1	0	0	0	14223	884	31	1	1650	1	SGK223	8	8185726	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08		8185726	138178296	38	21325											
MFHAS1	9258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	8748228	8748228	+	Silent	SNP	G	G	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	8748228	G	T	8748228	2	4	362	1	0	0	0	0	0	0	0	1	9528	1115	39	4		4	MFHAS1	8	8748228	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	562502	8748228	137615794	39	21326											
EXTL3	2137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	28575522	28575522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	28575522	A	C	28575522	3	2	362	1	0	0	0	0	1	0	0	0	5329	246	9	5	1948	5	EXTL3	8	28575522	Missense_Mutation	SNP	A	TCGA-BP-4963-01A-01D-1462-08	19827294	28575522	117788500	40	21327											
WHSC1L1	54904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38135924	38135924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	G	38135924	T	G	38135924	3	3	362	1	0	0	0	0	1	0	0	0	17375	1551	54	5	558	5	WHSC1L1	8	38135924	Missense_Mutation	SNP	T	TCGA-BP-4963-01A-01D-1462-08	9560402	38135924	108228098	41	21328											
CHD7	55636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	61769234	61769234	+	Silent	SNP	T	T	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	61769234	T	C	61769234	2	2	362	1	0	0	0	0	0	0	0	1	3332	1751	61	3		3	CHD7	8	61769234	Silent	SNP	T	TCGA-BP-4963-01A-01D-1462-08	23633310	61769234	84594788	42	21329											
ZNF250	58500	hgsc.bcm.edu;ucsc.edu	37	8	146107815	146107816	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	146107816	-	T	146107815	7	5	362	1	0	1	1	0	0	0	0	0	17807	564	20	0	918	0	ZNF250	8	146107815	Frame_Shift_Ins	INS	-	TCGA-BP-4963-01A-01D-1462-08	84338581	146107815	256207	43	21330											
DOCK8	81704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	340260	340260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	340260	C	A	340260	3	1	362	1	0	0	0	0	1	0	0	0	4695	623	22	4	1672	4	DOCK8	9	340260	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08		340260	140873171	44	21331	258	2									
DOCK8	81704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	340261	340261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	340261	C	A	340261	3	1	362	1	0	0	0	0	1	0	0	0	4695	652	23	4	1673	4	DOCK8	9	340261	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08	1	340261	140873170	45	21332	258	2									
PIP4K2A	5305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	22896899	22896899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	22896899	C	T	22896899	3	4	362	1	0	0	0	0	1	0	0	0	11943	536	19	1	956	1	PIP4K2A	10	22896899	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08		22896899	112637848	46	21333											
CLRN3	119467	hgsc.bcm.edu;ucsc.edu	37	10	129682022	129682023	+	Frame_Shift_Ins	INS	-	-	TGCG	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	TGCG	129682023	-	TGCG	129682022	7	5	362	1	0	1	1	0	0	0	0	0	3561	333	12	0	341	0	CLRN3	10	129682022	Frame_Shift_Ins	INS	-	TCGA-BP-4963-01A-01D-1462-08	106785123	129682022	5852725	47	21334											
MS4A12	54860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60265040	60265040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	60265040	C	A	60265040	3	1	362	1	0	0	0	0	1	0	0	0	9863	564	20	4	251	4	MS4A12	11	60265040	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08		60265040	74741476	48	21335											
PRPF19	27339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60658695	60658695	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	60658695	G	A	60658695	2	1	362	1	0	0	0	0	0	0	0	1	12574	1136	40	1		1	PRPF19	11	60658695	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	393655	60658695	74347821	49	21336											
PAK1	5058	hgsc.bcm.edu	37	11	77103527	77103528	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	G	77103528	-	G	77103527	7	5	362	1	0	1	1	0	0	0	0	0	11406	1567	55	0	1707	0	PAK1	11	77103527	Frame_Shift_Ins	INS	-	TCGA-BP-4963-01A-01D-1462-08	16444832	77103527	57902989	50	21337											
OR8G5	219865	hgsc.bcm.edu	37	11	124134972	124134973	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	124134973	-	T	124134972	7	5	362	1	0	1	1	0	0	0	0	0	11243	333	12	0	252	0	OR8G5	11	124134972	Frame_Shift_Ins	INS	-	TCGA-BP-4963-01A-01D-1462-08	47031445	124134972	10871544	51	21338											
LPCAT3	10162	hgsc.bcm.edu;ucsc.edu	37	12	7090193	7090193	+	Missense_Mutation	SNP	A	A	C	rs1984564	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	7090193	A	C	7090193	3	2	362	1	0	0	0	0	1	0	0	0	8919	101	4	5	841	5	LPCAT3	12	7090193	Missense_Mutation	SNP	A	TCGA-BP-4963-01A-01D-1462-08		7090193	126761702	52	21339											
CLSTN3	9746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7301668	7301668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	7301668	C	A	7301668	3	1	362	1	0	0	0	0	1	0	0	0	3565	826	29	4	1998	4	CLSTN3	12	7301668	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08	211475	7301668	126550227	53	21340											
STYK1	55359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10772767	10772767	+	Silent	SNP	G	G	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	10772767	G	C	10772767	2	2	362	1	0	0	0	0	0	0	0	1	15371	929	33	4		4	STYK1	12	10772767	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	3471099	10772767	123079128	54	21341											
ALG10	84920	broad.mit.edu;hgsc.bcm.edu	37	12	34178892	34178892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	34178892	G	A	34178892	3	1	362	1	0	0	0	0	1	0	0	0	511	1174	41	2	474	2	ALG10	12	34178892	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	23406125	34178892	99673003	55	21342											
FBXW8	26259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117448166	117448166	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	117448166	G	A	117448166	2	1	362	1	0	0	0	0	0	0	0	1	5777	1281	45	2		2	FBXW8	12	117448166	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	83269274	117448166	16403729	56	21343	259	2									
FBXW8	26259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117448167	117448167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	117448167	A	C	117448167	3	2	362	1	0	0	0	0	1	0	0	0	5777	247	9	5	1309	5	FBXW8	12	117448167	Missense_Mutation	SNP	A	TCGA-BP-4963-01A-01D-1462-08	1	117448167	16403728	57	21344	259	2									
BRCA2	675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32911477	32911477	+	Silent	SNP	A	A	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	32911477	A	T	32911477	2	4	362	1	0	0	0	0	0	0	0	1	1501	262	10	5		5	BRCA2	13	32911477	Silent	SNP	A	TCGA-BP-4963-01A-01D-1462-08		32911477	82258401	58	21345											
ATP7B	540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	52539139	52539139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	52539139	G	T	52539139	3	4	362	1	0	0	0	0	1	0	0	0	1191	1348	47	4	2727	4	ATP7B	13	52539139	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	19627662	52539139	62630739	59	21346											
EDDM3B	64184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21238699	21238699	+	Silent	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	21238699	C	T	21238699	2	4	362	1	0	0	0	0	0	0	0	1	4912	535	19	1		1	EDDM3B	14	21238699	Silent	SNP	C	TCGA-BP-4963-01A-01D-1462-08		21238699	86110841	60	21347											
NUMB	8650	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	73746101	73746101	+	Silent	SNP	A	A	G	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	G	73746101	A	G	73746101	2	3	362	1	0	0	0	0	0	0	0	1	10758	117	5	3		3	NUMB	14	73746101	Silent	SNP	A	TCGA-BP-4963-01A-01D-1462-08	52507402	73746101	33603439	61	21348											
GPR65	8477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	88477438	88477438	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	G	88477438	T	G	88477438	3	3	362	1	0	0	0	0	1	0	0	0	6713	1551	54	5	249	5	GPR65	14	88477438	Missense_Mutation	SNP	T	TCGA-BP-4963-01A-01D-1462-08	14731337	88477438	18872102	62	21349											
DUOX1	53905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45454451	45454451	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	45454451	A	T	45454451	3	4	362	1	0	0	0	0	1	0	0	0	4802	188	7	5	4242	5	DUOX1	15	45454451	Missense_Mutation	SNP	A	TCGA-BP-4963-01A-01D-1462-08		45454451	57076941	63	21350											
FBN1	2200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	48779393	48779393	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	48779393	G	A	48779393	2	1	362	1	0	0	0	0	0	0	0	1	5709	1280	45	2		2	FBN1	15	48779393	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	3324942	48779393	53751999	64	21351											
UNC13C	440279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	54626051	54626051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	54626051	G	A	54626051	3	1	362	1	0	0	0	0	1	0	0	0	16998	1290	45	2	4635	2	UNC13C	15	54626051	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	5846658	54626051	47905341	65	21352											
LRRK1	79705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	101597210	101597210	+	Silent	SNP	A	A	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	101597210	A	T	101597210	2	4	362	1	0	0	0	0	0	0	0	1	9039	262	10	5		5	LRRK1	15	101597210	Silent	SNP	A	TCGA-BP-4963-01A-01D-1462-08	46971159	101597210	934182	66	21353											
PIGQ	9091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	633428	633428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	633428	G	T	633428	3	4	362	1	0	0	0	0	1	0	0	0	11903	1348	47	4	2177	4	PIGQ	16	633428	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08		633428	89721325	67	21354											
RTN4RL1	146760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1840903	1840903	+	Silent	SNP	G	G	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	1840903	G	T	1840903	2	4	362	1	0	0	0	0	0	0	0	1	13744	1103	39	4		4	RTN4RL1	17	1840903	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08		1840903	79354307	68	21355											
EPN2	22905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	19186717	19186717	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	19186717	G	A	19186717	2	1	362	1	0	0	0	0	0	0	0	1	5188	1020	36	2		2	EPN2	17	19186717	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	17345814	19186717	62008493	69	21356											
NLK	51701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26449740	26449740	+	Silent	SNP	T	T	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	26449740	T	C	26449740	2	2	362	1	0	0	0	0	0	0	0	1	10473	1731	60	3		3	NLK	17	26449740	Silent	SNP	T	TCGA-BP-4963-01A-01D-1462-08	7263023	26449740	54745470	70	21357											
ACCN1	0	hgsc.bcm.edu;ucsc.edu	37	17	31438954	31438961	+	Frame_Shift_Del	DEL	CAGGTACT	CAGGTACT	-	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	CAGGTACT	CAGGTACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	-	31438961	CAGGTACT	-	31438954	7	5	362	1	0	1	0	1	0	0	0	0	128	697	25	0	887	0	ACCN1	17	31438954	Frame_Shift_Del	DEL	CAGGTACT	TCGA-BP-4963-01A-01D-1462-08	4989214	31438954	49756256	71	21358											
KRT36	8689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39643672	39643672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	39643672	C	A	39643672	3	1	362	1	0	0	0	0	1	0	0	0	8480	912	32	4	497	4	KRT36	17	39643672	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08	8204718	39643672	41551538	72	21359											
GPATCH8	23131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42477630	42477630	+	Silent	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	42477630	G	A	42477630	2	1	362	1	0	0	0	0	0	0	0	1	6601	1190	42	2		2	GPATCH8	17	42477630	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	2833958	42477630	38717580	73	21360											
KIAA1267	0	hgsc.bcm.edu;ucsc.edu	37	17	44144984	44144984	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	-	44144984	C	-	44144984	7	5	362	1	0	1	0	1	0	0	0	0	8226	507	18	0	1778	0	KIAA1267	17	44144984	Frame_Shift_Del	DEL	C	TCGA-BP-4963-01A-01D-1462-08	1667354	44144984	37050226	74	21361											
CCDC47	57003	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61841511	61841511	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	61841511	G	C	61841511	3	2	362	1	0	0	0	0	1	0	0	0	2820	933	33	4	1079	4	CCDC47	17	61841511	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	17696527	61841511	19353699	75	21362											
TNRC6C	57690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76046332	76046332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	76046332	G	A	76046332	3	1	362	1	0	0	0	0	1	0	0	0	16354	1291	45	2	1191	2	TNRC6C	17	76046332	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	14204821	76046332	5148878	76	21363											
ASPSCR1	79058	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	79954308	79954308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	79954308	G	T	79954308	3	4	362	1	0	0	0	0	1	0	0	0	1059	1020	36	4	545	4	ASPSCR1	17	79954308	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08	3907976	79954308	1240902	77	21364											
C18orf19	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	13681730	13681730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	13681730	T	C	13681730	3	2	362	1	0	0	0	0	1	0	0	0	1898	1812	63	3	483	3	C18orf19	18	13681730	Missense_Mutation	SNP	T	TCGA-BP-4963-01A-01D-1462-08		13681730	64395518	78	21365											
AP3D1	8943	broad.mit.edu	37	19	2115366	2115366	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	2115366	T	T	2115366	3	4	362	1	0	0	0	0	1	0	0	0	746	652	23	1	1462	1	AP3D1	19	2115366	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08		2115366	57013617	79	21366											
SLC39A3	29985	hgsc.bcm.edu;ucsc.edu	37	19	2737131	2737131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	-	2737131	T	-	2737131	7	5	362	1	0	1	0	1	0	0	0	0	14632	1609	56	0	935	0	SLC39A3	19	2737131	Frame_Shift_Del	DEL	T	TCGA-BP-4963-01A-01D-1462-08	621765	2737131	56391852	80	21367											
VAV1	7409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6853050	6853050	+	Silent	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	6853050	C	T	6853050	2	4	362	1	0	0	0	0	0	0	0	1	17143	668	24	2		2	VAV1	19	6853050	Silent	SNP	C	TCGA-BP-4963-01A-01D-1462-08	4115919	6853050	52275933	81	21368											
SMARCA4	6597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11129632	11129632	+	Splice_Site	SNP	G	G	A	rs113895708	alternate_allele	TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	11129632	G	A	11129632	5	1	362	1	0	0	0	0	0	0	1	0	14783	956	33	2	2500	2	SMARCA4	19	11129632	Splice_Site	SNP	G	TCGA-BP-4963-01A-01D-1462-08	4276582	11129632	47999351	82	21369											
EMR3	84658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14740973	14740973	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	14740973	T	A	14740973	3	1	362	1	0	0	0	0	1	0	0	0	5108	1696	59	5	280	5	EMR3	19	14740973	Missense_Mutation	SNP	T	TCGA-BP-4963-01A-01D-1462-08	3611341	14740973	44388010	83	21370											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39026031	39026031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	G	39026031	A	G	39026031	3	3	362	1	0	0	0	0	1	0	0	0	13781	202	7	3	11837	3	RYR1	19	39026031	Missense_Mutation	SNP	A	TCGA-BP-4963-01A-01D-1462-08	24285058	39026031	20102952	84	21371											
DONSON	29980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34956957	34956957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	34956957	C	T	34956957	3	4	362	1	0	0	0	0	1	0	0	0	4708	739	26	2	1004	2	DONSON	21	34956957	Missense_Mutation	SNP	C	TCGA-BP-4963-01A-01D-1462-08		34956957	13172938	85	21372											
SIM2	6493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	38084845	38084845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	38084845	T	A	38084845	3	1	362	1	0	0	0	0	1	0	0	0	14337	1493	52	5	281	5	SIM2	21	38084845	Missense_Mutation	SNP	T	TCGA-BP-4963-01A-01D-1462-08	3127888	38084845	10045050	86	21373											
TRPM2	7226	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	45859019	45859019	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	A	45859019	T	A	45859019	3	1	362	1	0	0	0	0	1	0	0	0	16598	1667	58	5	4355	5	TRPM2	21	45859019	Missense_Mutation	SNP	T	TCGA-BP-4963-01A-01D-1462-08	7774174	45859019	2270876	87	21374											
MPST	4357	broad.mit.edu	37	22	37420445	37420445	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	-	37420445	-	-	37420445	7	5	362	1	0	1	0	1	0	0	0	0	9751	506	18	0	255	0	MPST	22	37420445	Frame_Shift_Del	DEL	C	TCGA-BP-4963-01A-01D-1462-08		37420445	13884121	88	21375											
BHLHB9	80823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	102004677	102004677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	T	102004677	G	T	102004677	3	4	362	1	0	0	0	0	1	0	0	0	1420	1087	38	4	756	4	BHLHB9	23	102004677	Missense_Mutation	SNP	G	TCGA-BP-4963-01A-01D-1462-08		102004677	53265883	89	21376											
PLS3	5358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	114880823	114880823	+	Silent	SNP	G	G	C	novel		TCGA-BP-4963-01A-01D-1462-08	TCGA-BP-4963-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	154bfa5d-0d9a-40c6-a2a5-bde1054702c3	b04cb512-8edf-466c-af10-9a2fba9bc4a9	C	114880823	G	C	114880823	2	2	362	1	0	0	0	0	0	0	0	1	12115	1277	45	4		4	PLS3	23	114880823	Silent	SNP	G	TCGA-BP-4963-01A-01D-1462-08	12876146	114880823	40389737	90	21377											
TAS1R3	83756	broad.mit.edu;hgsc.bcm.edu	37	1	1268364	1268364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	1268364	A	G	1268364	3	3	363	1	0	0	0	0	1	0	0	0	15576	188	7	3	1353	3	TAS1R3	1	1268364	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08		1268364	247982257	1	21378											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu	37	1	19480421	19480421	+	Silent	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	19480421	G	T	19480421	2	4	363	1	0	0	0	0	0	0	0	1	16916	1306	46	4		4	UBR4	1	19480421	Silent	SNP	G	TCGA-BP-4964-01A-01D-1462-08	18212057	19480421	229770200	2	21379											
OTUD3	23252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	20224088	20224088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	20224088	G	T	20224088	3	4	363	1	0	0	0	0	1	0	0	0	11320	1174	41	4	553	4	OTUD3	1	20224088	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	743667	20224088	229026533	3	21380											
PIGV	55650	hgsc.bcm.edu;ucsc.edu	37	1	27121228	27121228	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	-	27121228	T	-	27121228	7	5	363	1	0	1	0	1	0	0	0	0	11908	1609	56	0	709	0	PIGV	1	27121228	Frame_Shift_Del	DEL	T	TCGA-BP-4964-01A-01D-1462-08	6897140	27121228	222129393	4	21381											
CLSPN	63967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36230877	36230877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	36230877	A	C	36230877	3	2	363	1	0	0	0	0	1	0	0	0	3562	446	16	5	4040	5	CLSPN	1	36230877	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08	9109649	36230877	213019744	5	21382											
NDUFS5	4725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39494463	39494463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	39494463	G	T	39494463	3	4	363	1	0	0	0	0	1	0	0	0	10302	1348	47	4	69	4	NDUFS5	1	39494463	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	3263586	39494463	209756158	6	21383											
HECTD3	79654	broad.mit.edu;hgsc.bcm.edu	37	1	45476654	45476654	+	Silent	SNP	G	G	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	45476654	G	C	45476654	2	2	363	1	0	0	0	0	0	0	0	1	7048	1219	43	4		4	HECTD3	1	45476654	Silent	SNP	G	TCGA-BP-4964-01A-01D-1462-08	5982191	45476654	203773967	7	21384											
ZNF326	284695	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	90475839	90475839	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	90475839	T	G	90475839	3	3	363	1	0	0	0	0	1	0	0	0	17858	1435	50	5	834	5	ZNF326	1	90475839	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08	44999185	90475839	158774782	8	21385											
ARHGAP30	257106	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161039395	161039395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	161039395	C	T	161039395	3	4	363	1	0	0	0	0	1	0	0	0	879	855	30	2	3333	2	ARHGAP30	1	161039395	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	70563556	161039395	88211226	9	21386											
RALGPS2	55103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	178852665	178852665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	178852665	G	T	178852665	3	4	363	1	0	0	0	0	1	0	0	0	13031	1029	36	4	939	4	RALGPS2	1	178852665	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	17813270	178852665	70397956	10	21387											
PTGS2	5743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186645102	186645102	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	186645102	G	T	186645102	4	4	363	1	0	0	0	0	0	1	0	0	12767	1372	48	4	641	4	PTGS2	1	186645102	Nonsense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	7792437	186645102	62605519	11	21388											
ASPM	259266	hgsc.bcm.edu;ucsc.edu	37	1	197072929	197072929	+	Missense_Mutation	SNP	G	G	A	rs41299625	bycluster;byfrequency;by1000genomes	TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	197072929	G	A	197072929	3	1	363	1	0	0	0	0	1	0	0	0	1056	1145	40	1	5025	1	ASPM	1	197072929	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	10427827	197072929	52177692	12	21389											
ITSN2	50618	broad.mit.edu	37	2	24524884	24524884	+	Silent	SNP	T	G	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	24524884	G	G	24524884	2	3	363	1	0	0	0	0	0	0	0	1	7934	1654	58	5		5	ITSN2	2	24524884	Silent	SNP	T	TCGA-BP-4964-01A-01D-1462-08		24524884	218674489	13	21390											
SEMA4F	10505	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	74907017	74907017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	74907017	G	T	74907017	3	4	363	1	0	0	0	0	1	0	0	0	14048	1203	42	4	2048	4	SEMA4F	2	74907017	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	50382133	74907017	168292356	14	21391											
SCN1A	6323	hgsc.bcm.edu;ucsc.edu	37	2	166848925	166848925	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	-	166848925	A	-	166848925	7	5	363	1	0	1	0	1	0	0	0	0	13927	243	9	0	1173	0	SCN1A	2	166848925	Frame_Shift_Del	DEL	A	TCGA-BP-4964-01A-01D-1462-08	91941908	166848925	76350448	15	21392											
CHN1	1123	broad.mit.edu;hgsc.bcm.edu	37	2	175742574	175742574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	175742574	C	A	175742574	3	1	363	1	0	0	0	0	1	0	0	0	3364	912	32	4	868	4	CHN1	2	175742574	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	8893649	175742574	67456799	16	21393											
TTN	7273	broad.mit.edu;hgsc.bcm.edu	37	2	179572409	179572409	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	179572409	C	G	179572409	3	3	363	1	0	0	0	0	1	0	0	0	16747	864	30	4	75696	4	TTN	2	179572409	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	3829835	179572409	63626964	17	21394											
CPO	130749	broad.mit.edu	37	2	207820279	207820279	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	207820279	A	A	207820279	4	1	363	1	0	0	0	0	0	1	0	0	3822	1500	52	5	268	5	CPO	2	207820279	Nonsense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08	28247870	207820279	35379094	18	21395											
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238277415	238277415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	238277415	C	T	238277415	3	4	363	1	0	0	0	0	1	0	0	0	3703	536	19	1	4982	1	COL6A3	2	238277415	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	30457136	238277415	4921958	19	21396											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10183763	10183763	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	10183763	G	G	10183763	3	3	363	1	0	0	0	0	1	0	0	0	17174	130	5	3	234	3	VHL	3	10183763	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08		10183763	187838667	20	21397											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu	37	3	52651293	52651293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	52651293	A	C	52651293	3	2	363	1	0	0	0	0	1	0	0	0	11498	214	8	5	3165	5	PBRM1	3	52651293	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08	42467530	52651293	145371137	21	21398											
MSL2	55167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	135913893	135913893	+	Silent	SNP	G	G	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	135913893	G	A	135913893	2	1	363	1	0	0	0	0	0	0	0	1	9885	1252	44	2		2	MSL2	3	135913893	Silent	SNP	G	TCGA-BP-4964-01A-01D-1462-08	83262600	135913893	62108537	22	21399											
MYNN	55892	broad.mit.edu;ucsc.edu	37	3	169496987	169496987	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	169496987	T	T	169496987	3	4	363	1	0	0	0	0	1	0	0	0	10068	838	29	2	704	2	MYNN	3	169496987	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	33583094	169496987	28525443	23	21400											
SKIL	6498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	170078221	170078221	+	Silent	SNP	G	G	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	170078221	G	A	170078221	2	1	363	1	0	0	0	0	0	0	0	1	14371	1103	39	1		1	SKIL	3	170078221	Silent	SNP	G	TCGA-BP-4964-01A-01D-1462-08	581234	170078221	27944209	24	21401											
CCDC50	152137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	191087771	191087771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	191087771	C	T	191087771	3	4	363	1	0	0	0	0	1	0	0	0	2822	855	30	2	412	2	CCDC50	3	191087771	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	21009550	191087771	6934659	25	21402											
LMLN	89782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	197707203	197707203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	197707203	C	T	197707203	3	4	363	1	0	0	0	0	1	0	0	0	8854	643	23	1	578	1	LMLN	3	197707203	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	6619432	197707203	315227	26	21403											
ZNF721	170960	broad.mit.edu;hgsc.bcm.edu	37	4	436954	436954	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	436954	T	G	436954	3	3	363	1	0	0	0	0	1	0	0	0	18134	1490	52	5	1473	5	ZNF721	4	436954	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08		436954	190717322	27	21404											
CRIPAK	285464	broad.mit.edu;hgsc.bcm.edu	37	4	1389122	1389122	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	1389122	C	T	1389122	4	4	363	1	0	0	0	0	0	1	0	0	3879	644	23	1	825	1	CRIPAK	4	1389122	Nonsense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	952168	1389122	189765154	28	21405											
MRPL1	65008	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	78792972	78792972	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	78792972	A	T	78792972	3	4	363	1	0	0	0	0	1	0	0	0	9781	217	8	5	112	5	MRPL1	4	78792972	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08	77403850	78792972	112361304	29	21406											
EGF	1950	hgsc.bcm.edu	37	4	110865129	110865130	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	110865130	-	G	110865129	7	5	363	1	0	1	1	0	0	0	0	0	4964	1580	55	0	655	0	EGF	4	110865129	Frame_Shift_Ins	INS	-	TCGA-BP-4964-01A-01D-1462-08	32072157	110865129	80289147	30	21407											
RANBP3L	202151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	36257042	36257042	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	36257042	C	T	36257042	5	4	363	1	0	0	0	0	0	0	1	0	13043	521	18	2	513	2	RANBP3L	5	36257042	Splice_Site	SNP	C	TCGA-BP-4964-01A-01D-1462-08		36257042	144658218	31	21408											
F2RL1	2150	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	76128711	76128711	+	Silent	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	76128711	C	T	76128711	2	4	363	1	0	0	0	0	0	0	0	1	5346	535	19	1		1	F2RL1	5	76128711	Silent	SNP	C	TCGA-BP-4964-01A-01D-1462-08	39871669	76128711	104786549	32	21409											
SLC27A6	28965	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	128351731	128351731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	128351731	G	T	128351731	3	4	363	1	0	0	0	0	1	0	0	0	14543	1348	47	4	1141	4	SLC27A6	5	128351731	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	52223020	128351731	52563529	33	21410											
KIAA0319	9856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	24569057	24569057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	24569057	G	T	24569057	3	4	363	1	0	0	0	0	1	0	0	0	8175	1357	47	4	1162	4	KIAA0319	6	24569057	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08		24569057	146546010	34	21411											
ZNF322A	0	broad.mit.edu	37	6	26638479	26638479	+	Silent	SNP	A	G	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	26638479	G	G	26638479	2	3	363	1	0	0	0	0	0	0	0	1	17853	389	14	3		3	ZNF322A	6	26638479	Silent	SNP	A	TCGA-BP-4964-01A-01D-1462-08	2069422	26638479	144476588	35	21412											
HUS1	3364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	48015247	48015247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	48015247	C	T	48015247	3	4	363	1	0	0	0	0	1	0	0	0	7466	565	20	2	355	2	HUS1	7	48015247	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08		48015247	111123416	36	21413											
ANKIB1	54467	hgsc.bcm.edu;ucsc.edu	37	7	91974300	91974310	+	Frame_Shift_Del	DEL	TTGTATGTGCA	TTGTATGTGCA	-	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	TTGTATGTGCA	TTGTATGTGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	-	91974310	TTGTATGTGCA	-	91974300	7	5	363	1	0	1	0	1	0	0	0	0	630	1829	64	0	1027	0	ANKIB1	7	91974300	Frame_Shift_Del	DEL	TTGTATGTGCA	TCGA-BP-4964-01A-01D-1462-08	43959053	91974300	67164363	37	21414											
C7orf51	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100085830	100085830	+	Silent	SNP	G	G	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	100085830	G	A	100085830	2	1	363	1	0	0	0	0	0	0	0	1	2402	933	33	2		2	C7orf51	7	100085830	Silent	SNP	G	TCGA-BP-4964-01A-01D-1462-08	8111530	100085830	59052833	38	21415											
AGFG2	3268	broad.mit.edu	37	7	100137100	100137101	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	100137101	C	C	100137100	7	5	363	1	0	1	1	0	0	0	0	0	381	43	2	0	133	0	AGFG2	7	100137100	Frame_Shift_Ins	INS	-	TCGA-BP-4964-01A-01D-1462-08	51270	100137100	59001563	39	21416											
PLXNA4	91584	broad.mit.edu	37	7	132193205	132193205	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	132193205	A	A	132193205	3	1	363	1	0	0	0	0	1	0	0	0	12129	1145	40	1	5874	1	PLXNA4	7	132193205	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	32056105	132193205	26945458	40	21417											
TMEM140	55281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134849219	134849219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	134849219	G	A	134849219	3	1	363	1	0	0	0	0	1	0	0	0	16067	1087	38	1	28	1	TMEM140	7	134849219	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	2656014	134849219	24289444	41	21418											
TMEM213	155006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	138487680	138487680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	138487680	C	T	138487680	3	4	363	1	0	0	0	0	1	0	0	0	16148	652	23	1	200	1	TMEM213	7	138487680	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	3638461	138487680	20650983	42	21419											
LOXL2	4017	broad.mit.edu;hgsc.bcm.edu	37	8	23167334	23167334	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	23167334	T	G	23167334	3	3	363	1	0	0	0	0	1	0	0	0	8907	1551	54	5	617	5	LOXL2	8	23167334	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08		23167334	123196688	43	21420											
DOCK5	80005	broad.mit.edu	37	8	25158135	25158135	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	25158135	T	T	25158135	4	4	363	1	0	0	0	0	0	1	0	0	4692	1175	41	4	842	4	DOCK5	8	25158135	Nonsense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	1990801	25158135	121205887	44	21421											
EPHX2	2053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	27362496	27362496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	27362496	A	T	27362496	3	4	363	1	0	0	0	0	1	0	0	0	5182	130	5	5	384	5	EPHX2	8	27362496	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08	2204361	27362496	119001526	45	21422											
ZNF572	137209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125989480	125989480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	125989480	G	A	125989480	3	1	363	1	0	0	0	0	1	0	0	0	18016	1001	35	2	976	2	ZNF572	8	125989480	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	98626984	125989480	20374542	46	21423											
EIF2C2	27161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	141549418	141549418	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	141549418	C	T	141549418	5	4	363	1	0	0	0	0	0	0	1	0	5008	521	18	2	425	2	EIF2C2	8	141549418	Splice_Site	SNP	C	TCGA-BP-4964-01A-01D-1462-08	15559938	141549418	4814604	47	21424											
EIF2C2	27161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	141566069	141566069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	141566069	T	C	141566069	3	2	363	1	0	0	0	0	1	0	0	0	5008	1493	52	3	1424	3	EIF2C2	8	141566069	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08	16651	141566069	4797953	48	21425											
FAM120A	23196	broad.mit.edu;hgsc.bcm.edu	37	9	96214409	96214409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	96214409	G	T	96214409	3	4	363	1	0	0	0	0	1	0	0	0	5419	1357	47	4	214	4	FAM120A	9	96214409	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08		96214409	44999022	49	21426											
CORO2A	7464	hgsc.bcm.edu	37	9	100919886	100919887	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	100919887	-	G	100919886	7	5	363	1	0	1	1	0	0	0	0	0	3758	1567	55	0	1564	0	CORO2A	9	100919886	Frame_Shift_Ins	INS	-	TCGA-BP-4964-01A-01D-1462-08	4705477	100919886	40293545	50	21427											
SVEP1	79987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	113168633	113168633	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	-	113168633	C	-	113168633	7	5	363	1	0	1	0	1	0	0	0	0	15432	864	30	0	1512	0	SVEP1	9	113168633	Frame_Shift_Del	DEL	C	TCGA-BP-4964-01A-01D-1462-08	12248747	113168633	28044798	51	21428											
ZNF79	7633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130207059	130207059	+	Silent	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	130207059	C	T	130207059	2	4	363	1	0	0	0	0	0	0	0	1	18173	668	24	2		2	ZNF79	9	130207059	Silent	SNP	C	TCGA-BP-4964-01A-01D-1462-08	17038426	130207059	11006372	52	21429	260	2									
ZNF79	7633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130207060	130207060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	130207060	T	C	130207060	3	2	363	1	0	0	0	0	1	0	0	0	18173	1522	53	3	1099	3	ZNF79	9	130207060	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08	1	130207060	11006371	53	21430	260	2									
FRMD4A	55691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	13702514	13702514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	13702514	G	A	13702514	3	1	363	1	0	0	0	0	1	0	0	0	6058	942	33	2	1439	2	FRMD4A	10	13702514	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08		13702514	121832233	54	21431											
PARVA	55742	broad.mit.edu;hgsc.bcm.edu	37	11	12518075	12518075	+	Silent	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	12518075	G	T	12518075	2	4	363	1	0	0	0	0	0	0	0	1	11475	1306	46	4		4	PARVA	11	12518075	Silent	SNP	G	TCGA-BP-4964-01A-01D-1462-08		12518075	122488441	55	21432											
INCENP	3619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61897891	61897891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	61897891	A	T	61897891	3	4	363	1	0	0	0	0	1	0	0	0	7740	159	6	5	902	5	INCENP	11	61897891	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08	49379816	61897891	73108625	56	21433	261	2									
INCENP	3619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61897892	61897892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	61897892	C	T	61897892	3	4	363	1	0	0	0	0	1	0	0	0	7740	536	19	1	903	1	INCENP	11	61897892	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	1	61897892	73108624	57	21434	261	2									
ME3	10873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	86159278	86159278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	86159278	T	C	86159278	3	2	363	1	0	0	0	0	1	0	0	0	9426	1464	51	3	683	3	ME3	11	86159278	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08	24261386	86159278	48847238	58	21435											
GRM5	2915	broad.mit.edu;hgsc.bcm.edu	37	11	88780709	88780709	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	88780709	T	G	88780709	3	3	363	1	0	0	0	0	1	0	0	0	6807	1551	54	5	3342	5	GRM5	11	88780709	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08	2621431	88780709	46225807	59	21436											
AMOTL1	154810	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	94554897	94554897	+	Silent	SNP	C	C	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	94554897	C	G	94554897	2	3	363	1	0	0	0	0	0	0	0	1	583	610	22	4		4	AMOTL1	11	94554897	Silent	SNP	C	TCGA-BP-4964-01A-01D-1462-08	5774188	94554897	40451619	60	21437											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108236074	108236074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	108236074	A	G	108236074	3	3	363	1	0	0	0	0	1	0	0	0	1109	131	5	3	9256	3	ATM	11	108236074	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08	13681177	108236074	26770442	61	21438											
WNT5B	81029	broad.mit.edu	37	12	1748873	1748873	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	1748873	T	T	1748873	3	4	363	1	0	0	0	0	1	0	0	0	17404	594	21	2	362	2	WNT5B	12	1748873	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08		1748873	132103022	62	21439											
MRPL51	51258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6602132	6602132	+	Missense_Mutation	SNP	G	G	C	rs11559083	bycluster;alternate_allele	TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	6602132	G	C	6602132	3	2	363	1	0	0	0	0	1	0	0	0	9822	1000	35	4	308	4	MRPL51	12	6602132	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	4853259	6602132	127249763	63	21440	262	2									
MRPL51	51258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6602137	6602137	+	Silent	SNP	A	A	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	6602137	A	C	6602137	2	2	363	1	0	0	0	0	0	0	0	1	9822	173	6	5		5	MRPL51	12	6602137	Silent	SNP	A	TCGA-BP-4964-01A-01D-1462-08	5	6602137	127249758	64	21441	262	2									
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49443747	49443747	+	Silent	SNP	G	G	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	49443747	G	A	49443747	2	1	363	1	0	0	0	0	0	0	0	1	9628	932	33	2		2	MLL2	12	49443747	Silent	SNP	G	TCGA-BP-4964-01A-01D-1462-08	42841610	49443747	84408148	65	21442											
LRP1	4035	broad.mit.edu;hgsc.bcm.edu	37	12	57588284	57588284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	57588284	C	A	57588284	3	1	363	1	0	0	0	0	1	0	0	0	8958	594	21	4	8260	4	LRP1	12	57588284	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	8144537	57588284	76263611	66	21443											
AVIL	10677	broad.mit.edu	37	12	58204236	58204236	+	Silent	SNP	C	T	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	58204236	T	T	58204236	2	4	363	1	0	0	0	0	0	0	0	1	1227	813	29	2		2	AVIL	12	58204236	Silent	SNP	C	TCGA-BP-4964-01A-01D-1462-08	615952	58204236	75647659	67	21444											
BEST3	144453	hgsc.bcm.edu	37	12	70088220	70088220	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	-	70088220	T	-	70088220	7	5	363	1	0	1	0	1	0	0	0	0	1406	1722	60	0	1861	0	BEST3	12	70088220	Frame_Shift_Del	DEL	T	TCGA-BP-4964-01A-01D-1462-08	11883984	70088220	63763675	68	21445											
NOS1	4842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117710301	117710301	+	Silent	SNP	G	G	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	117710301	G	C	117710301	2	2	363	1	0	0	0	0	0	0	0	1	10548	1161	41	4		4	NOS1	12	117710301	Silent	SNP	G	TCGA-BP-4964-01A-01D-1462-08	47622081	117710301	16141594	69	21446											
TSSK4	283629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24675911	24675911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	24675911	G	T	24675911	3	4	363	1	0	0	0	0	1	0	0	0	16683	971	34	4	428	4	TSSK4	14	24675911	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08		24675911	82673629	70	21447											
PSMA3	5684	hgsc.bcm.edu	37	14	58724704	58724705	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	58724705	-	T	58724704	7	5	363	1	0	1	1	0	0	0	0	0	12678	681	24	0	410	0	PSMA3	14	58724704	Frame_Shift_Ins	INS	-	TCGA-BP-4964-01A-01D-1462-08	34048793	58724704	48624836	71	21448											
PLEKHH1	57475	broad.mit.edu;hgsc.bcm.edu	37	14	68038960	68038960	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	68038960	C	A	68038960	4	1	363	1	0	0	0	0	0	1	0	0	12083	838	29	4	1732	4	PLEKHH1	14	68038960	Nonsense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	9314256	68038960	39310580	72	21449											
KIAA1409	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94088745	94088745	+	Silent	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	94088745	C	T	94088745	2	4	363	1	0	0	0	0	0	0	0	1	8237	535	19	1		1	KIAA1409	14	94088745	Silent	SNP	C	TCGA-BP-4964-01A-01D-1462-08	26049785	94088745	13260795	73	21450											
C15orf41	84529	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	36984363	36984363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	36984363	G	T	36984363	3	4	363	1	0	0	0	0	1	0	0	0	1797	1174	41	4	489	4	C15orf41	15	36984363	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08		36984363	65547029	74	21451											
DENND4A	10260	broad.mit.edu;hgsc.bcm.edu	37	15	65957783	65957783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	65957783	C	T	65957783	3	4	363	1	0	0	0	0	1	0	0	0	4435	478	17	2	480	2	DENND4A	15	65957783	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	28973420	65957783	36573609	75	21452											
BRD7	29117	broad.mit.edu;hgsc.bcm.edu	37	16	50402667	50402667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	50402667	T	C	50402667	3	2	363	1	0	0	0	0	1	0	0	0	1507	1792	62	3	2007	3	BRD7	16	50402667	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08		50402667	39952086	76	21453											
SLC9A5	6553	broad.mit.edu;hgsc.bcm.edu	37	16	67290903	67290903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	67290903	C	T	67290903	3	4	363	1	0	0	0	0	1	0	0	0	14730	759	27	1	1248	1	SLC9A5	16	67290903	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	16888236	67290903	23063850	77	21454											
CNTNAP4	85445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	76481968	76481968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	76481968	T	C	76481968	3	2	363	1	0	0	0	0	1	0	0	0	3651	1435	50	3	629	3	CNTNAP4	16	76481968	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08	9191065	76481968	13872785	78	21455											
ZZEF1	23140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3921211	3921211	+	Silent	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	3921211	C	T	3921211	2	4	363	1	0	0	0	0	0	0	0	1	18267	494	18	2		2	ZZEF1	17	3921211	Silent	SNP	C	TCGA-BP-4964-01A-01D-1462-08		3921211	77273999	79	21456											
ZZEF1	23140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4005690	4005690	+	Silent	SNP	A	A	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	4005690	A	G	4005690	2	3	363	1	0	0	0	0	0	0	0	1	18267	291	11	3		3	ZZEF1	17	4005690	Silent	SNP	A	TCGA-BP-4964-01A-01D-1462-08	84479	4005690	77189520	80	21457											
UTP6	55813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30213014	30213014	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	30213014	C	G	30213014	3	3	363	1	0	0	0	0	1	0	0	0	17114	478	17	4	1149	4	UTP6	17	30213014	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	26207324	30213014	50982196	81	21458											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9066807	9066807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	9066807	A	T	9066807	3	4	363	1	0	0	0	0	1	0	0	0	9980	217	8	5	23212	5	MUC16	19	9066807	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08		9066807	50062176	82	21459											
SMARCA4	6597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11144146	11144146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	11144146	C	T	11144146	3	4	363	1	0	0	0	0	1	0	0	0	14783	759	27	1	3825	1	SMARCA4	19	11144146	Missense_Mutation	SNP	C	TCGA-BP-4964-01A-01D-1462-08	2077339	11144146	47984837	83	21460											
ZNF878	729747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12155240	12155240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	12155240	A	T	12155240	3	4	363	1	0	0	0	0	1	0	0	0	18208	72	3	5	623	5	ZNF878	19	12155240	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08	1011094	12155240	46973743	84	21461											
ZNF574	64763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42582777	42582777	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	42582777	G	C	42582777	3	2	363	1	0	0	0	0	1	0	0	0	18018	1175	41	4	21	4	ZNF574	19	42582777	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	30427537	42582777	16546206	85	21462											
SEMG1	6406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	43837138	43837138	+	Silent	SNP	T	T	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	43837138	T	C	43837138	2	2	363	1	0	0	0	0	0	0	0	1	14057	1683	59	3		3	SEMG1	20	43837138	Silent	SNP	T	TCGA-BP-4964-01A-01D-1462-08		43837138	19188382	86	21463											
KRTAP10-5	386680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	46000020	46000020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	G	46000020	A	G	46000020	3	3	363	1	0	0	0	0	1	0	0	0	8519	246	9	3	383	3	KRTAP10-5	21	46000020	Missense_Mutation	SNP	A	TCGA-BP-4964-01A-01D-1462-08		46000020	2129875	87	21464											
PCNT	5116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47841950	47841950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	C	47841950	G	C	47841950	3	2	363	1	0	0	0	0	1	0	0	0	11597	1261	44	4	7217	4	PCNT	21	47841950	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	1841930	47841950	287945	88	21465											
RIMBP3	85376	hgsc.bcm.edu	37	22	20460113	20460115	+	In_Frame_Del	DEL	CCG	CCG	-	rs77846076	alternate_allele	TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	CCG	CCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	-	20460115	CCG	-	20460113	7	5	363	1	0	1	0	1	0	0	0	0	13377	864	30	0	3734	0	RIMBP3	22	20460113	In_Frame_Del	DEL	CCG	TCGA-BP-4964-01A-01D-1462-08		20460113	30844453	89	21466											
SEC14L2	23541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30805428	30805428	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	30805428	T	A	30805428	3	1	363	1	0	0	0	0	1	0	0	0	13995	1841	64	5	559	5	SEC14L2	22	30805428	Missense_Mutation	SNP	T	TCGA-BP-4964-01A-01D-1462-08	10345315	30805428	20499138	90	21467											
DCAF8L1	139425	broad.mit.edu;hgsc.bcm.edu	37	X	27998267	27998267	+	Silent	SNP	G	G	A	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	A	27998267	G	A	27998267	2	1	363	1	0	0	0	0	0	0	0	1	4279	1079	38	1		1	DCAF8L1	23	27998267	Silent	SNP	G	TCGA-BP-4964-01A-01D-1462-08		27998267	127272293	91	21468											
MUM1L1	139221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	105450813	105450813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	T	105450813	G	T	105450813	3	4	363	1	0	0	0	0	1	0	0	0	9993	1029	36	4	1390	4	MUM1L1	23	105450813	Missense_Mutation	SNP	G	TCGA-BP-4964-01A-01D-1462-08	77452546	105450813	49819747	92	21469											
DKC1	1736	hgsc.bcm.edu	37	X	154005088	154005089	+	In_Frame_Ins	INS	-	-	AAG	novel		TCGA-BP-4964-01A-01D-1462-08	TCGA-BP-4964-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b838251-67f5-4e22-a291-8a9e206d56db	30a80165-2c9b-4170-9907-275a227b32bf	AAG	154005089	-	AAG	154005088	7	5	363	1	0	1	1	0	0	0	0	0	4544	581	21	0	1549	0	DKC1	23	154005088	In_Frame_Ins	INS	-	TCGA-BP-4964-01A-01D-1462-08	48554275	154005088	1265472	93	21470											
TIE1	7075	broad.mit.edu	37	1	43782949	43782949	+	Missense_Mutation	SNP	G	G	C			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	C	43782949	G	C	43782949	3	2	364	1	0	0	0	0	1	0	0	0	15905	971	34	4	2547	4	TIE1	1	43782949	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08		43782949	205467672	1	21471											
HFM1	164045	broad.mit.edu	37	1	91784679	91784679	+	Missense_Mutation	SNP	A	A	C			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	C	91784679	A	C	91784679	3	2	364	1	0	0	0	0	1	0	0	0	7090	72	3	5	1599	5	HFM1	1	91784679	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	48001730	91784679	157465942	2	21472											
COL11A1	1301	broad.mit.edu	37	1	103474038	103474039	+	Frame_Shift_Ins	INS	-	-	T	rs149894788		TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	103474039	-	T	103474038	7	5	364	1	0	1	1	0	0	0	0	0	3669	565	20	0	3968	0	COL11A1	1	103474038	Frame_Shift_Ins	INS	-	TCGA-BP-4965-01A-01D-1462-08	11689359	103474038	145776583	3	21473											
CACYBP	27101	broad.mit.edu	37	1	174973869	174973869	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	174973869	A	T	174973869	3	4	364	1	0	0	0	0	1	0	0	0	2566	40	2	5	141	5	CACYBP	1	174973869	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	71499831	174973869	74276752	4	21474											
PNO1	56902	broad.mit.edu	37	2	68400546	68400546	+	Silent	SNP	T	T	C	rs146981426		TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	C	68400546	T	C	68400546	2	2	364	1	0	0	0	0	0	0	0	1	12168	1606	56	3		3	PNO1	2	68400546	Silent	SNP	T	TCGA-BP-4965-01A-01D-1462-08		68400546	174798827	5	21475											
NAT8	9027	broad.mit.edu	37	2	73868451	73868451	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	73868451	A	G	73868451	3	3	364	1	0	0	0	0	1	0	0	0	10186	188	7	3	382	3	NAT8	2	73868451	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	5467905	73868451	169330922	6	21476											
DCTN1	1639	broad.mit.edu	37	2	74594532	74594532	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	74594532	G	A	74594532	3	1	364	1	0	0	0	0	1	0	0	0	4308	1348	47	2	1692	2	DCTN1	2	74594532	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08	726081	74594532	168604841	7	21477											
XIRP2	129446	broad.mit.edu	37	2	168115152	168115156	+	Frame_Shift_Del	DEL	ATCAT	ATCAT	-			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	-	168115156	ATCAT	-	168115152	7	5	364	1	0	1	0	1	0	0	0	0	17442	101	4	0	11513	0	XIRP2	2	168115152	Frame_Shift_Del	DEL	ATCAT	TCGA-BP-4965-01A-01D-1462-08	93520620	168115152	75084221	8	21478											
TTN	7273	broad.mit.edu	37	2	179658188	179658188	+	Silent	SNP	T	T	C			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	C	179658188	T	C	179658188	2	2	364	1	0	0	0	0	0	0	0	1	16747	1799	63	3		3	TTN	2	179658188	Silent	SNP	T	TCGA-BP-4965-01A-01D-1462-08	11543036	179658188	63541185	9	21479											
CUL3	8452	broad.mit.edu	37	2	225360644	225360645	+	Frame_Shift_Ins	INS	-	-	TA			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	TA	225360645	-	TA	225360644	7	5	364	1	0	1	1	0	0	0	0	0	4058	1725	60	0	575	0	CUL3	2	225360644	Frame_Shift_Ins	INS	-	TCGA-BP-4965-01A-01D-1462-08	45702456	225360644	17838729	10	21480											
ANKMY1	51281	broad.mit.edu	37	2	241439472	241439472	+	Silent	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	241439472	C	T	241439472	2	4	364	1	0	0	0	0	0	0	0	1	634	842	30	2		2	ANKMY1	2	241439472	Silent	SNP	C	TCGA-BP-4965-01A-01D-1462-08	16078828	241439472	1759901	11	21481											
VHL	7428	broad.mit.edu	37	3	10188245	10188245	+	Missense_Mutation	SNP	G	G	T	rs104893830		TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	10188245	G	T	10188245	3	4	364	1	0	0	0	0	1	0	0	0	17174	1261	44	4	394	4	VHL	3	10188245	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08		10188245	187834185	12	21482											
VILL	50853	broad.mit.edu	37	3	38038588	38038588	+	Silent	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	38038588	C	T	38038588	2	4	364	1	0	0	0	0	0	0	0	1	17177	796	28	2		2	VILL	3	38038588	Silent	SNP	C	TCGA-BP-4965-01A-01D-1462-08	27850343	38038588	159983842	13	21483											
DOCK3	1795	broad.mit.edu	37	3	51265449	51265449	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	51265449	C	T	51265449	3	4	364	1	0	0	0	0	1	0	0	0	4690	710	25	2	1643	2	DOCK3	3	51265449	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08	13226861	51265449	146756981	14	21484											
PRKCD	5580	broad.mit.edu	37	3	53215262	53215262	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	53215262	C	T	53215262	4	4	364	1	0	0	0	0	0	1	0	0	12519	827	29	2	365	2	PRKCD	3	53215262	Nonsense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08	1949813	53215262	144807168	15	21485											
COPB2	9276	broad.mit.edu	37	3	139090593	139090593	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	139090593	C	T	139090593	3	4	364	1	0	0	0	0	1	0	0	0	3731	864	30	2	1595	2	COPB2	3	139090593	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08	85875331	139090593	58931837	16	21486											
ATR	545	broad.mit.edu	37	3	142177892	142177892	+	Missense_Mutation	SNP	G	G	T	rs150286172	byFrequency	TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	142177892	G	T	142177892	3	4	364	1	0	0	0	0	1	0	0	0	1204	933	33	4	539	4	ATR	3	142177892	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08	3087299	142177892	55844538	17	21487											
SLC26A1	10861	broad.mit.edu	37	4	982680	982680	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	982680	C	T	982680	3	4	364	1	0	0	0	0	1	0	0	0	14527	710	25	2	165	2	SLC26A1	4	982680	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08		982680	190171596	18	21488											
WDFY3	23001	broad.mit.edu	37	4	85724573	85724573	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	C	85724573	T	C	85724573	3	2	364	1	0	0	0	0	1	0	0	0	17282	1493	52	3	8315	3	WDFY3	4	85724573	Missense_Mutation	SNP	T	TCGA-BP-4965-01A-01D-1462-08	84741893	85724573	105429703	19	21489											
HERC5	51191	broad.mit.edu	37	4	89383504	89383504	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	89383504	G	A	89383504	3	1	364	1	0	0	0	0	1	0	0	0	7068	1291	45	2	699	2	HERC5	4	89383504	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08	3658931	89383504	101770772	20	21490											
PDZD2	23037	broad.mit.edu	37	5	32098517	32098517	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	32098517	G	A	32098517	3	1	364	1	0	0	0	0	1	0	0	0	11708	1290	45	2	8081	2	PDZD2	5	32098517	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08		32098517	148816743	21	21491											
COMMD10	51397	broad.mit.edu	37	5	115423221	115423221	+	Missense_Mutation	SNP	T	T	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	115423221	T	A	115423221	3	1	364	1	0	0	0	0	1	0	0	0	3717	1461	51	5	75	5	COMMD10	5	115423221	Missense_Mutation	SNP	T	TCGA-BP-4965-01A-01D-1462-08	83324704	115423221	65492039	22	21492											
HIVEP1	3096	broad.mit.edu	37	6	12164458	12164458	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	12164458	G	A	12164458	3	1	364	1	0	0	0	0	1	0	0	0	7193	1203	42	2	7951	2	HIVEP1	6	12164458	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08		12164458	158950609	23	21493											
HIST1H2BI	8346	broad.mit.edu	37	6	26273395	26273395	+	Silent	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	26273395	C	T	26273395	2	4	364	1	0	0	0	0	0	0	0	1	7155	564	20	2		2	HIST1H2BI	6	26273395	Silent	SNP	C	TCGA-BP-4965-01A-01D-1462-08	14108937	26273395	144841672	24	21494											
MDC1	9656	broad.mit.edu	37	6	30680150	30680150	+	Silent	SNP	T	T	C			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	C	30680150	T	C	30680150	2	2	364	1	0	0	0	0	0	0	0	1	9410	1683	59	3		3	MDC1	6	30680150	Silent	SNP	T	TCGA-BP-4965-01A-01D-1462-08	4406755	30680150	140434917	25	21495											
CUL7	9820	broad.mit.edu	37	6	43018715	43018715	+	Silent	SNP	A	A	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	43018715	A	G	43018715	2	3	364	1	0	0	0	0	0	0	0	1	4062	291	11	3		3	CUL7	6	43018715	Silent	SNP	A	TCGA-BP-4965-01A-01D-1462-08	12338565	43018715	128096352	26	21496											
CUL9	23113	broad.mit.edu	37	6	43156328	43156328	+	Silent	SNP	G	G	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	43156328	G	T	43156328	2	4	364	1	0	0	0	0	0	0	0	1	4063	1335	47	4		4	CUL9	6	43156328	Silent	SNP	G	TCGA-BP-4965-01A-01D-1462-08	137613	43156328	127958739	27	21497											
ASL	435	broad.mit.edu	37	7	65557847	65557847	+	Missense_Mutation	SNP	T	T	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	65557847	T	A	65557847	3	1	364	1	0	0	0	0	1	0	0	0	1044	1667	58	5	1405	5	ASL	7	65557847	Missense_Mutation	SNP	T	TCGA-BP-4965-01A-01D-1462-08		65557847	93580816	28	21498											
MUC17	140453	broad.mit.edu	37	7	100696355	100696355	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	-	100696355	G	-	100696355	7	5	364	1	0	1	0	1	0	0	0	0	9981	1000	35	0	13230	0	MUC17	7	100696355	Frame_Shift_Del	DEL	G	TCGA-BP-4965-01A-01D-1462-08	35138508	100696355	58442308	29	21499											
PNPLA8	50640	broad.mit.edu	37	7	108155244	108155244	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	108155244	C	A	108155244	3	1	364	1	0	0	0	0	1	0	0	0	12178	652	23	4	1692	4	PNPLA8	7	108155244	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08	7458889	108155244	50983419	30	21500											
PRKDC	5591	broad.mit.edu	37	8	48762023	48762023	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	48762023	C	A	48762023	3	1	364	1	0	0	0	0	1	0	0	0	12531	825	29	4	5475	4	PRKDC	8	48762023	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08		48762023	97601999	31	21501			1	42		2	2	21	C		4.070113e-05
PRKDC	5591	broad.mit.edu	37	8	48762043	48762043	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	48762043	C	T	48762043	3	4	364	1	0	0	0	0	1	0	0	0	12531	835	29	2	5495	2	PRKDC	8	48762043	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08	20	48762043	97601979	32	21502			1	42		2	2	21	C		4.070113e-05
MUSK	4593	broad.mit.edu	37	9	113549999	113549999	+	Missense_Mutation	SNP	T	T	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	113549999	T	A	113549999	3	1	364	1	0	0	0	0	1	0	0	0	9996	1783	62	5	1894	5	MUSK	9	113549999	Missense_Mutation	SNP	T	TCGA-BP-4965-01A-01D-1462-08		113549999	27663432	33	21503											
RABGAP1	23637	broad.mit.edu	37	9	125746779	125746779	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	125746779	A	G	125746779	3	3	364	1	0	0	0	0	1	0	0	0	12977	72	3	3	172	3	RABGAP1	9	125746779	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	12196780	125746779	15466652	34	21504											
PTEN	5728	broad.mit.edu	37	10	89712006	89712006	+	Silent	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	89712006	C	T	89712006	2	4	364	1	0	0	0	0	0	0	0	1	12748	755	27	1		1	PTEN	10	89712006	Silent	SNP	C	TCGA-BP-4965-01A-01D-1462-08		89712006	45822741	35	21505											
TH	7054	broad.mit.edu	37	11	2189843	2189843	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	2189843	C	T	2189843	3	4	364	1	0	0	0	0	1	0	0	0	15850	884	31	1	1172	1	TH	11	2189843	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08		2189843	132816673	36	21506											
TRPM5	29850	broad.mit.edu	37	11	2433463	2433463	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	2433463	G	T	2433463	3	4	364	1	0	0	0	0	1	0	0	0	16601	1368	48	4	1157	4	TRPM5	11	2433463	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08	243620	2433463	132573053	37	21507											
ATP2A2	488	broad.mit.edu	37	12	110734534	110734534	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	110734534	A	T	110734534	3	4	364	1	0	0	0	0	1	0	0	0	1137	246	9	5	473	5	ATP2A2	12	110734534	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08		110734534	23117361	38	21508											
P2RX7	5027	broad.mit.edu	37	12	121570799	121570799	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	121570799	A	G	121570799	3	3	364	1	0	0	0	0	1	0	0	0	11352	333	12	3	28	3	P2RX7	12	121570799	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	10836265	121570799	12281096	39	21509											
KNTC1	9735	broad.mit.edu	37	12	123054258	123054258	+	Missense_Mutation	SNP	A	A	C			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	C	123054258	A	C	123054258	3	2	364	1	0	0	0	0	1	0	0	0	8435	101	4	5	1829	5	KNTC1	12	123054258	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	1483459	123054258	10797637	40	21510											
ESR2	2100	broad.mit.edu	37	14	64716381	64716381	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	64716381	C	T	64716381	3	4	364	1	0	0	0	0	1	0	0	0	5259	536	19	1	582	1	ESR2	14	64716381	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08		64716381	42633159	41	21511											
OIP5	11339	broad.mit.edu	37	15	41624695	41624695	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	41624695	C	A	41624695	3	1	364	1	0	0	0	0	1	0	0	0	10855	507	18	4	644	4	OIP5	15	41624695	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08		41624695	60906697	42	21512											
SPG11	80208	broad.mit.edu	37	15	44876035	44876035	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	44876035	A	G	44876035	3	3	364	1	0	0	0	0	1	0	0	0	15053	101	4	3	1532	3	SPG11	15	44876035	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	3251340	44876035	57655357	43	21513											
BCL2L10	10017	broad.mit.edu	37	15	52402170	52402170	+	Splice_Site	DEL	C	C	-			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	-	52402170	C	-	52402170	8	5	364	1	0	1	0	1	0	0	1	0	1368	869	30	0	128	0	BCL2L10	15	52402170	Splice_Site	DEL	C	TCGA-BP-4965-01A-01D-1462-08	7526135	52402170	50129222	44	21514											
CILP	8483	broad.mit.edu	37	15	65491129	65491129	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	65491129	C	A	65491129	3	1	364	1	0	0	0	0	1	0	0	0	3431	710	25	4	2063	4	CILP	15	65491129	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08	13088959	65491129	37040263	45	21515											
TIPIN	54962	broad.mit.edu	37	15	66645153	66645153	+	Splice_Site	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	66645153	C	T	66645153	5	4	364	1	0	0	0	0	0	0	1	0	15937	695	24	2	800	2	TIPIN	15	66645153	Splice_Site	SNP	C	TCGA-BP-4965-01A-01D-1462-08	1154024	66645153	35886239	46	21516											
ACAN	176	broad.mit.edu	37	15	89391157	89391157	+	Silent	SNP	C	C	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	89391157	C	T	89391157	2	4	364	1	0	0	0	0	0	0	0	1	117	738	26	2		2	ACAN	15	89391157	Silent	SNP	C	TCGA-BP-4965-01A-01D-1462-08	22746004	89391157	13140235	47	21517											
PRKCB	5579	broad.mit.edu	37	16	24202477	24202477	+	Missense_Mutation	SNP	C	C	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	24202477	C	G	24202477	3	3	364	1	0	0	0	0	1	0	0	0	12518	710	25	4	1851	4	PRKCB	16	24202477	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08		24202477	66152276	48	21518											
SRCAP	10847	broad.mit.edu	37	16	30750345	30750345	+	Missense_Mutation	SNP	C	C	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	30750345	C	G	30750345	3	3	364	1	0	0	0	0	1	0	0	0	15147	565	20	4	9110	4	SRCAP	16	30750345	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08	6547868	30750345	59604408	49	21519											
CES1	1066	broad.mit.edu	37	16	55855371	55855371	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	55855371	C	A	55855371	3	1	364	1	0	0	0	0	1	0	0	0	3271	595	21	4	1144	4	CES1	16	55855371	Missense_Mutation	SNP	C	TCGA-BP-4965-01A-01D-1462-08	25105026	55855371	34499382	50	21520											
MT1H	4496	broad.mit.edu	37	16	56704457	56704457	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	56704457	A	G	56704457	3	3	364	1	0	0	0	0	1	0	0	0	9909	72	3	3	74	3	MT1H	16	56704457	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	849086	56704457	33650296	51	21521											
HYDIN	54768	broad.mit.edu	37	16	70866802	70866802	+	Silent	SNP	A	A	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	70866802	A	G	70866802	2	3	364	1	0	0	0	0	0	0	0	1	7474	291	11	3		3	HYDIN	16	70866802	Silent	SNP	A	TCGA-BP-4965-01A-01D-1462-08	14162345	70866802	19487951	52	21522											
MLKL	197259	broad.mit.edu	37	16	74725180	74725180	+	Silent	SNP	G	G	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	74725180	G	A	74725180	2	1	364	1	0	0	0	0	0	0	0	1	9626	1310	46	2		2	MLKL	16	74725180	Silent	SNP	G	TCGA-BP-4965-01A-01D-1462-08	3858378	74725180	15629573	53	21523											
ZFPM1	161882	broad.mit.edu	37	16	88599110	88599110	+	Silent	SNP	G	G	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	88599110	G	A	88599110	2	1	364	1	0	0	0	0	0	0	0	1	17669	1074	38	1		1	ZFPM1	16	88599110	Silent	SNP	G	TCGA-BP-4965-01A-01D-1462-08	13873930	88599110	1755643	54	21524											
DNAH9	1770	broad.mit.edu	37	17	11778481	11778481	+	Silent	SNP	C	C	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	11778481	C	A	11778481	2	1	364	1	0	0	0	0	0	0	0	1	4610	813	29	4		4	DNAH9	17	11778481	Silent	SNP	C	TCGA-BP-4965-01A-01D-1462-08		11778481	69416729	55	21525											
SLC47A1	55244	broad.mit.edu	37	17	19452976	19452976	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	T	19452976	A	T	19452976	3	4	364	1	0	0	0	0	1	0	0	0	14660	217	8	5	502	5	SLC47A1	17	19452976	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	7674495	19452976	61742234	56	21526											
RNF213	57674	broad.mit.edu	37	17	78350219	78350219	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	78350219	G	A	78350219	3	1	364	1	0	0	0	0	1	0	0	0	13490	1029	36	2	13825	2	RNF213	17	78350219	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08	58897243	78350219	2844991	57	21527											
MUC16	94025	broad.mit.edu	37	19	9062202	9062202	+	Missense_Mutation	SNP	G	G	C			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	C	9062202	G	C	9062202	3	2	364	1	0	0	0	0	1	0	0	0	9980	1029	36	4	18607	4	MUC16	19	9062202	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08		9062202	50066781	58	21528											
SLC1A6	6511	broad.mit.edu	37	19	15083538	15083538	+	Missense_Mutation	SNP	G	G	C			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	C	15083538	G	C	15083538	3	2	364	1	0	0	0	0	1	0	0	0	14449	1145	40	4	1545	4	SLC1A6	19	15083538	Missense_Mutation	SNP	G	TCGA-BP-4965-01A-01D-1462-08	6021336	15083538	44045445	59	21529											
KLK12	43849	broad.mit.edu	37	19	51532649	51532649	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	51532649	A	G	51532649	3	3	364	1	0	0	0	0	1	0	0	0	8407	159	6	3	156	3	KLK12	19	51532649	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	36449111	51532649	7596334	60	21530											
LILRB5	10990	broad.mit.edu	37	19	54754843	54754843	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	G	54754843	A	G	54754843	3	3	364	1	0	0	0	0	1	0	0	0	8801	319	11	3		3	LILRB5	19	54754843	Missense_Mutation	SNP	A	TCGA-BP-4965-01A-01D-1462-08	3222194	54754843	4374140	61	21531											
GP6	51206	broad.mit.edu	37	19	55539166	55539166	+	Silent	SNP	T	T	A	rs115934645	by1000genomes	TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	55539166	T	A	55539166	2	1	364	1	0	0	0	0	0	0	0	1	6591	1741	61	5		5	GP6	19	55539166	Silent	SNP	T	TCGA-BP-4965-01A-01D-1462-08	784323	55539166	3589817	62	21532											
PGK1	5230	broad.mit.edu	37	X	77369583	77369583	+	Missense_Mutation	SNP	T	T	A			TCGA-BP-4965-01A-01D-1462-08	TCGA-BP-4965-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b01dbc-0333-4215-acd5-c3b91278f86c	3fbf9388-6996-471b-8df8-ff21e961d894	A	77369583	T	A	77369583	3	1	364	1	0	0	0	0	1	0	0	0	11797	1667	58	5	357	5	PGK1	23	77369583	Missense_Mutation	SNP	T	TCGA-BP-4965-01A-01D-1462-08		77369583	77900977	63	21533											
AHDC1	27245	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	27874262	27874262	+	Silent	SNP	G	G	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	27874262	G	A	27874262	2	1	365	1	0	0	0	0	0	0	0	1	412	1020	36	2		2	AHDC1	1	27874262	Silent	SNP	G	TCGA-BP-4967-01A-01D-1462-08		27874262	221376359	1	21534											
TXLNA	200081	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32646917	32646917	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	32646917	A	C	32646917	3	2	365	1	0	0	0	0	1	0	0	0	16799	217	8	5	250	5	TXLNA	1	32646917	Missense_Mutation	SNP	A	TCGA-BP-4967-01A-01D-1462-08	4772655	32646917	216603704	2	21535											
EIF2C3	192669	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36499790	36499790	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	36499790	T	G	36499790	3	3	365	1	0	0	0	0	1	0	0	0	5009	1638	57	5	1657	5	EIF2C3	1	36499790	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	3852873	36499790	212750831	3	21536											
RIMKLA	284716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	42880262	42880262	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	42880262	G	C	42880262	3	2	365	1	0	0	0	0	1	0	0	0	13378	1174	41	4	811	4	RIMKLA	1	42880262	Missense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08	6380472	42880262	206370359	4	21537											
BSND	7809	hgsc.bcm.edu;ucsc.edu	37	1	55464986	55464986	+	Missense_Mutation	SNP	G	G	A	rs34561376	bycluster;byfrequency;by1000genomes	TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	55464986	G	A	55464986	3	1	365	1	0	0	0	0	1	0	0	0	1533	1145	40	1	129	1	BSND	1	55464986	Missense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08	12584724	55464986	193785635	5	21538											
RPL5	6125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	93299160	93299160	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	93299160	C	A	93299160	4	1	365	1	0	0	0	0	0	1	0	0	13610	489	17	4	142	4	RPL5	1	93299160	Nonsense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08	37834174	93299160	155951461	6	21539											
ITGA10	8515	broad.mit.edu;hgsc.bcm.edu	37	1	145534208	145534208	+	Silent	SNP	G	G	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	145534208	G	A	145534208	2	1	365	1	0	0	0	0	0	0	0	1	7880	1074	38	1		1	ITGA10	1	145534208	Silent	SNP	G	TCGA-BP-4967-01A-01D-1462-08	52235048	145534208	103716413	7	21540											
IGSF8	93185	broad.mit.edu;hgsc.bcm.edu	37	1	160063938	160063938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	160063938	A	G	160063938	3	3	365	1	0	0	0	0	1	0	0	0	7611	275	10	3	1391	3	IGSF8	1	160063938	Missense_Mutation	SNP	A	TCGA-BP-4967-01A-01D-1462-08	14529730	160063938	89186683	8	21541											
RXRG	6258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	165386398	165386398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	165386398	T	C	165386398	3	2	365	1	0	0	0	0	1	0	0	0	13778	1608	56	3	917	3	RXRG	1	165386398	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	5322460	165386398	83864223	9	21542											
RABGAP1L	9910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	174245014	174245014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	174245014	C	T	174245014	3	4	365	1	0	0	0	0	1	0	0	0	12978	565	20	2	1127	2	RABGAP1L	1	174245014	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08	8858616	174245014	75005607	10	21543											
PTPRC	5788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	198687421	198687421	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	-	198687421	A	-	198687421	7	5	365	1	0	1	0	1	0	0	0	0	12810	391	14	0	1704	0	PTPRC	1	198687421	Frame_Shift_Del	DEL	A	TCGA-BP-4967-01A-01D-1462-08	24442407	198687421	50563200	11	21544											
CHIT1	1118	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203188874	203188874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	203188874	T	A	203188874	3	1	365	1	0	0	0	0	1	0	0	0	3348	1667	58	5	583	5	CHIT1	1	203188874	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	4501453	203188874	46061747	12	21545											
KCNK2	3776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	215408257	215408257	+	Silent	SNP	G	G	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	215408257	G	A	215408257	2	1	365	1	0	0	0	0	0	0	0	1	8073	933	33	2		2	KCNK2	1	215408257	Silent	SNP	G	TCGA-BP-4967-01A-01D-1462-08	12219383	215408257	33842364	13	21546											
SOS1	6654	broad.mit.edu;hgsc.bcm.edu	37	2	39222302	39222302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	39222302	C	T	39222302	3	4	365	1	0	0	0	0	1	0	0	0	14949	565	20	2	709	2	SOS1	2	39222302	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08		39222302	203977071	14	21547											
TMEM150A	129303	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	85828149	85828149	+	Silent	SNP	G	G	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	85828149	G	T	85828149	2	4	365	1	0	0	0	0	0	0	0	1	16079	1277	45	4		4	TMEM150A	2	85828149	Silent	SNP	G	TCGA-BP-4967-01A-01D-1462-08	46605847	85828149	157371224	15	21548											
NEB	4703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152362014	152362014	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	-	152362014	T	-	152362014	7	5	365	1	0	1	0	1	0	0	0	0	10309	1551	54	0	1929	0	NEB	2	152362014	Frame_Shift_Del	DEL	T	TCGA-BP-4967-01A-01D-1462-08	66533865	152362014	90837359	16	21549											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188263	10188263	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	10188263	T	G	10188263	3	3	365	1	0	0	0	0	1	0	0	0	17174	1493	52	5	412	5	VHL	3	10188263	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08		10188263	187834167	17	21550											
SLC7A14	57709	broad.mit.edu;hgsc.bcm.edu	37	3	170244556	170244556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	170244556	T	C	170244556	3	2	365	1	0	0	0	0	1	0	0	0	14709	1667	58	3	2173	3	SLC7A14	3	170244556	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	160056293	170244556	27777874	18	21551											
MAP9	79884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	156281456	156281457	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	156281457	-	T	156281456	7	5	365	1	0	1	1	0	0	0	0	0	9277	565	20	0	1061	0	MAP9	4	156281456	Frame_Shift_Ins	INS	-	TCGA-BP-4967-01A-01D-1462-08		156281456	34872820	19	21552											
WWC2	80014	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	184175071	184175071	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	-	184175071	A	-	184175071	7	5	365	1	0	1	0	1	0	0	0	0	17424	246	9	0	1149	0	WWC2	4	184175071	Frame_Shift_Del	DEL	A	TCGA-BP-4967-01A-01D-1462-08	27893615	184175071	6979205	20	21553											
PAIP1	10605	broad.mit.edu;hgsc.bcm.edu	37	5	43543190	43543190	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	43543190	A	T	43543190	3	4	365	1	0	0	0	0	1	0	0	0	11403	217	8	5	821	5	PAIP1	5	43543190	Missense_Mutation	SNP	A	TCGA-BP-4967-01A-01D-1462-08		43543190	137372070	21	21554											
ITGA1	3672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	52221264	52221264	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	52221264	A	T	52221264	3	4	365	1	0	0	0	0	1	0	0	0	7879	362	13	5	2634	5	ITGA1	5	52221264	Missense_Mutation	SNP	A	TCGA-BP-4967-01A-01D-1462-08	8678074	52221264	128693996	22	21555											
SEC24A	10802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	133996855	133996855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	133996855	A	C	133996855	3	2	365	1	0	0	0	0	1	0	0	0	14007	69	3	5	150	5	SEC24A	5	133996855	Missense_Mutation	SNP	A	TCGA-BP-4967-01A-01D-1462-08	81775591	133996855	46918405	23	21556											
CYFIP2	26999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	156810297	156810297	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	156810297	T	G	156810297	3	3	365	1	0	0	0	0	1	0	0	0	4140	1464	51	5	3243	5	CYFIP2	5	156810297	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	22813442	156810297	24104963	24	21557											
KIF13A	63971	broad.mit.edu;hgsc.bcm.edu	37	6	17850652	17850652	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	17850652	G	C	17850652	3	2	365	1	0	0	0	0	1	0	0	0	8281	1066	37	4	4951	4	KIF13A	6	17850652	Missense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08		17850652	153264415	25	21558											
DOM3Z	1797	broad.mit.edu;hgsc.bcm.edu	37	6	31939426	31939426	+	Silent	SNP	T	T	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	31939426	T	C	31939426	2	2	365	1	0	0	0	0	0	0	0	1	4707	1538	54	3		3	DOM3Z	6	31939426	Silent	SNP	T	TCGA-BP-4967-01A-01D-1462-08	14088774	31939426	139175641	26	21559											
SPDEF	25803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	34506194	34506194	+	Missense_Mutation	SNP	G	G	A	rs148079586		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	34506194	G	A	34506194	3	1	365	1	0	0	0	0	1	0	0	0	15038	1115	39	1	146	1	SPDEF	6	34506194	Missense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08	2566768	34506194	136608873	27	21560											
C6orf89	221477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36882108	36882108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	36882108	C	A	36882108	3	1	365	1	0	0	0	0	1	0	0	0	2375	623	22	4	487	4	C6orf89	6	36882108	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08	2375914	36882108	134232959	28	21561											
FAM135A	57579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	71185175	71185175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	71185175	A	G	71185175	3	3	365	1	0	0	0	0	1	0	0	0	5452	101	4	3	230	3	FAM135A	6	71185175	Missense_Mutation	SNP	A	TCGA-BP-4967-01A-01D-1462-08	34303067	71185175	99929892	29	21562											
MDN1	23195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90399594	90399595	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	90399595	-	G	90399594	7	5	365	1	0	1	1	0	0	0	0	0	9422	188	7	0	5924	0	MDN1	6	90399594	Frame_Shift_Ins	INS	-	TCGA-BP-4967-01A-01D-1462-08	19214419	90399594	80715473	30	21563											
FSCN1	6624	broad.mit.edu;hgsc.bcm.edu	37	7	5632985	5632985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	5632985	C	T	5632985	3	4	365	1	0	0	0	0	1	0	0	0	6074	623	22	2	420	2	FSCN1	7	5632985	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08		5632985	153505678	31	21564											
CFTR	1080	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	117232369	117232369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	117232369	G	T	117232369	3	4	365	1	0	0	0	0	1	0	0	0	3296	933	33	4	2202	4	CFTR	7	117232369	Missense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08	111599384	117232369	41906294	32	21565											
ASAH1	427	hgsc.bcm.edu	37	8	17942197	17942203	+	Frame_Shift_Del	DEL	AGCAAAG	AGCAAAG	-	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	AGCAAAG	AGCAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	-	17942203	AGCAAAG	-	17942197	7	5	365	1	0	1	0	1	0	0	0	0	1006	175	7	0	1284	0	ASAH1	8	17942197	Frame_Shift_Del	DEL	AGCAAAG	TCGA-BP-4967-01A-01D-1462-08		17942197	128421825	33	21566											
CYP7A1	1581	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	59404310	59404310	+	Silent	SNP	A	A	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	59404310	A	C	59404310	2	2	365	1	0	0	0	0	0	0	0	1	4198	117	5	5		5	CYP7A1	8	59404310	Silent	SNP	A	TCGA-BP-4967-01A-01D-1462-08	41462113	59404310	86959712	34	21567											
ZFPM2	23414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	106813474	106813474	+	Silent	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	106813474	C	T	106813474	2	4	365	1	0	0	0	0	0	0	0	1	17670	767	27	1		1	ZFPM2	8	106813474	Silent	SNP	C	TCGA-BP-4967-01A-01D-1462-08	47409164	106813474	39550548	35	21568											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113277723	113277723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	113277723	C	T	113277723	3	4	365	1	0	0	0	0	1	0	0	0	3948	739	26	2	1566	2	CSMD3	8	113277723	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08	6464249	113277723	33086299	36	21569											
PTPDC1	138639	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	96870182	96870183	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	96870183	-	A	96870182	7	5	365	1	0	1	1	0	0	0	0	0	12784	943	33	0	2497	0	PTPDC1	9	96870182	Frame_Shift_Ins	INS	-	TCGA-BP-4967-01A-01D-1462-08		96870182	44343249	37	21570											
HK1	3098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	71103744	71103744	+	Silent	SNP	T	T	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	71103744	T	C	71103744	2	2	365	1	0	0	0	0	0	0	0	1	7197	1594	55	3		3	HK1	10	71103744	Silent	SNP	T	TCGA-BP-4967-01A-01D-1462-08		71103744	64431003	38	21571											
MGEA5	10724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	103557823	103557823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	103557823	T	C	103557823	3	2	365	1	0	0	0	0	1	0	0	0	9562	1725	60	3	880	3	MGEA5	10	103557823	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	32454079	103557823	31976924	39	21572											
ST5	6764	broad.mit.edu	37	11	8752274	8752274	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	8752274	A	A	8752274	3	1	365	1	0	0	0	0	1	0	0	0	15232	652	23	4	2922	4	ST5	11	8752274	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08		8752274	126254242	40	21573											
PZP	5858	hgsc.bcm.edu	37	12	9305862	9305862	+	Silent	SNP	G	G	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	9305862	G	T	9305862	2	4	365	1	0	0	0	0	0	0	0	1	12882	1277	45	4		4	PZP	12	9305862	Silent	SNP	G	TCGA-BP-4967-01A-01D-1462-08		9305862	124546033	41	21574											
ATF7IP	55729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14613557	14613557	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	14613557	G	C	14613557	3	2	365	1	0	0	0	0	1	0	0	0	1087	1319	46	4	2317	4	ATF7IP	12	14613557	Missense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08	5307695	14613557	119238338	42	21575											
NELL2	4753	broad.mit.edu;hgsc.bcm.edu	37	12	44917251	44917251	+	Silent	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	44917251	C	T	44917251	2	4	365	1	0	0	0	0	0	0	0	1	10341	842	30	2		2	NELL2	12	44917251	Silent	SNP	C	TCGA-BP-4967-01A-01D-1462-08	30303694	44917251	88934644	43	21576											
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49425039	49425039	+	Silent	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	49425039	C	T	49425039	2	4	365	1	0	0	0	0	0	0	0	1	9628	697	25	2		2	MLL2	12	49425039	Silent	SNP	C	TCGA-BP-4967-01A-01D-1462-08	4507788	49425039	84426856	44	21577											
KRT4	3851	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53207945	53207945	+	Silent	SNP	G	G	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	53207945	G	T	53207945	2	4	365	1	0	0	0	0	0	0	0	1	8484	987	35	4		4	KRT4	12	53207945	Silent	SNP	G	TCGA-BP-4967-01A-01D-1462-08	3782906	53207945	80643950	45	21578											
DACH1	1602	broad.mit.edu	37	13	72204836	72204836	+	Silent	SNP	G	A	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	72204836	A	A	72204836	2	1	365	1	0	0	0	0	0	0	0	1	4222	1103	39	1		1	DACH1	13	72204836	Silent	SNP	G	TCGA-BP-4967-01A-01D-1462-08		72204836	42965042	46	21579											
ZIC5	85416	broad.mit.edu;hgsc.bcm.edu	37	13	100622569	100622569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	100622569	T	C	100622569	3	2	365	1	0	0	0	0	1	0	0	0	17694	1551	54	3	638	3	ZIC5	13	100622569	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	28417733	100622569	14547309	47	21580											
RNASE8	122665	broad.mit.edu;ucsc.edu	37	14	21526326	21526326	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	21526326	T	T	21526326	3	4	365	1	0	0	0	0	1	0	0	0	13422	971	34	4	277	4	RNASE8	14	21526326	Missense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08		21526326	85823214	48	21581											
MTHFD1	4522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64855180	64855180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	64855180	T	A	64855180	3	1	365	1	0	0	0	0	1	0	0	0	9934	1435	50	5	37	5	MTHFD1	14	64855180	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	43328854	64855180	42494360	49	21582											
ZDHHC22	283576	broad.mit.edu;hgsc.bcm.edu	37	14	77600035	77600035	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	77600035	C	G	77600035	3	3	365	1	0	0	0	0	1	0	0	0	17625	680	24	4	12	4	ZDHHC22	14	77600035	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08	12744855	77600035	29749505	50	21583											
CYP46A1	10858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	100166423	100166423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	100166423	T	C	100166423	3	2	365	1	0	0	0	0	1	0	0	0	4184	1580	55	3	446	3	CYP46A1	14	100166423	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	22566388	100166423	7183117	51	21584											
USP8	9101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	50763851	50763851	+	Silent	SNP	A	A	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	50763851	A	G	50763851	2	3	365	1	0	0	0	0	0	0	0	1	17101	69	3	3		3	USP8	15	50763851	Silent	SNP	A	TCGA-BP-4967-01A-01D-1462-08		50763851	51767541	52	21585											
MYO1E	4643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59470597	59470597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	59470597	C	G	59470597	3	3	365	1	0	0	0	0	1	0	0	0	10079	893	31	4	1322	4	MYO1E	15	59470597	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08	8706746	59470597	43060795	53	21586											
SPSB3	90864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1828480	1828480	+	Missense_Mutation	SNP	G	G	A	rs150535227		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	1828480	G	A	1828480	3	1	365	1	0	0	0	0	1	0	0	0	15126	1059	37	1	827	1	SPSB3	16	1828480	Missense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08		1828480	88526273	54	21587											
TCEB2	6923	hgsc.bcm.edu	37	16	2825480	2825481	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	2825481	-	G	2825480	7	5	365	1	0	1	1	0	0	0	0	0	15692	1567	55	0	285	0	TCEB2	16	2825480	Frame_Shift_Ins	INS	-	TCGA-BP-4967-01A-01D-1462-08	997000	2825480	87529273	55	21588											
NOD2	64127	broad.mit.edu;ucsc.edu	37	16	50745117	50745117	+	Missense_Mutation	SNP	C	T	T	rs2076754	bycluster;byfrequency	TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	50745117	T	T	50745117	3	4	365	1	0	0	0	0	1	0	0	0	10524	768	27	1	1309	1	NOD2	16	50745117	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08	47919637	50745117	39609636	56	21589											
IRX3	79191	broad.mit.edu;hgsc.bcm.edu	37	16	54319294	54319294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	54319294	T	C	54319294	3	2	365	1	0	0	0	0	1	0	0	0	7852	1696	59	3	1018	3	IRX3	16	54319294	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	3574177	54319294	36035459	57	21590											
SLC12A4	6560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67979424	67979424	+	Silent	SNP	C	C	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	67979424	C	A	67979424	2	1	365	1	0	0	0	0	0	0	0	1	14398	697	25	4		4	SLC12A4	16	67979424	Silent	SNP	C	TCGA-BP-4967-01A-01D-1462-08	13660130	67979424	22375329	58	21591											
PELP1	27043	hgsc.bcm.edu;ucsc.edu	37	17	4577915	4577915	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	-	4577915	G	-	4577915	7	5	365	1	0	1	0	1	0	0	0	0	11732	1000	35	0	1940	0	PELP1	17	4577915	Frame_Shift_Del	DEL	G	TCGA-BP-4967-01A-01D-1462-08		4577915	76617295	59	21592											
PER1	5187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8048306	8048306	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	8048306	T	A	8048306	3	1	365	1	0	0	0	0	1	0	0	0	11736	1464	51	5	1672	5	PER1	17	8048306	Missense_Mutation	SNP	T	TCGA-BP-4967-01A-01D-1462-08	3470391	8048306	73146904	60	21593											
SEZ6	124925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27308944	27308944	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	27308944	A	C	27308944	3	2	365	1	0	0	0	0	1	0	0	0	14155	72	3	5	2892	5	SEZ6	17	27308944	Missense_Mutation	SNP	A	TCGA-BP-4967-01A-01D-1462-08	19260638	27308944	53886266	61	21594											
STAT5B	6777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40359718	40359718	+	Silent	SNP	A	A	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	40359718	A	G	40359718	2	3	365	1	0	0	0	0	0	0	0	1	15281	59	3	3		3	STAT5B	17	40359718	Silent	SNP	A	TCGA-BP-4967-01A-01D-1462-08	13050774	40359718	40835492	62	21595											
CEP192	55125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	13114196	13114196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	C	13114196	A	C	13114196	3	2	365	1	0	0	0	0	1	0	0	0	3253	217	8	5	7397	5	CEP192	18	13114196	Missense_Mutation	SNP	A	TCGA-BP-4967-01A-01D-1462-08		13114196	64963052	63	21596											
CHST9	83539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	24496340	24496340	+	Silent	SNP	G	G	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	24496340	G	T	24496340	2	4	365	1	0	0	0	0	0	0	0	1	3413	1335	47	4		4	CHST9	18	24496340	Silent	SNP	G	TCGA-BP-4967-01A-01D-1462-08	11382144	24496340	53580908	64	21597											
POLRMT	5442	broad.mit.edu	37	19	632854	632854	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	-	632854	-	-	632854	7	5	365	1	0	1	0	1	0	0	0	0	12245	739	26	0	3599	0	POLRMT	19	632854	Frame_Shift_Del	DEL	C	TCGA-BP-4967-01A-01D-1462-08		632854	58496129	65	21598											
BTBD2	55643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1993133	1993133	+	Silent	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	1993133	C	T	1993133	2	4	365	1	0	0	0	0	0	0	0	1	1545	813	29	2		2	BTBD2	19	1993133	Silent	SNP	C	TCGA-BP-4967-01A-01D-1462-08	1360279	1993133	57135850	66	21599											
RINL	126432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39361507	39361507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	39361507	C	T	39361507	3	4	365	1	0	0	0	0	1	0	0	0	13388	864	30	2	993	2	RINL	19	39361507	Missense_Mutation	SNP	C	TCGA-BP-4967-01A-01D-1462-08	37368374	39361507	19767476	67	21600											
PRKD2	25865	hgsc.bcm.edu;ucsc.edu	37	19	47177890	47177899	+	Frame_Shift_Del	DEL	CTGCTGCAAA	CTGCTGCAAA	-	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	CTGCTGCAAA	CTGCTGCAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	-	47177899	CTGCTGCAAA	-	47177890	7	5	365	1	0	1	0	1	0	0	0	0	12529	922	32	0	113	0	PRKD2	19	47177890	Frame_Shift_Del	DEL	CTGCTGCAAA	TCGA-BP-4967-01A-01D-1462-08	7816383	47177890	11951093	68	21601											
ZNF765	91661	broad.mit.edu	37	19	53926630	53926630	+	RNA	SNP	C	T	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	53926630	T	T	53926630	1	4	365	0	1	0	0	0	0	0	0	0	18151	812	28	2		2	ZNF765	19	53926630	RNA	SNP	C	TCGA-BP-4967-01A-01D-1462-08	6748740	53926630	5202353	69	21602											
ZIM3	114026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57646763	57646763	+	Silent	SNP	C	C	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	57646763	C	T	57646763	2	4	365	1	0	0	0	0	0	0	0	1	17697	680	24	2		2	ZIM3	19	57646763	Silent	SNP	C	TCGA-BP-4967-01A-01D-1462-08	3720133	57646763	1482220	70	21603											
C20orf46	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	1162182	1162183	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	G	1162183	-	G	1162182	7	5	365	1	0	1	1	0	0	0	0	0	2115	291	11	0	693	0	C20orf46	20	1162182	Frame_Shift_Ins	INS	-	TCGA-BP-4967-01A-01D-1462-08		1162182	61863338	71	21604											
CNKSR2	22866	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	21667030	21667030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	21667030	G	T	21667030	3	4	365	1	0	0	0	0	1	0	0	0	3609	1174	41	4	2865	4	CNKSR2	23	21667030	Missense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08		21667030	133603530	72	21605											
GAGE12J	729396	broad.mit.edu;hgsc.bcm.edu	37	X	49179737	49179737	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	49179737	A	T	49179737	3	4	365	1	0	0	0	0	1	0	0	0	6195	246	9	5	67	5	GAGE12J	23	49179737	Missense_Mutation	SNP	A	TCGA-BP-4967-01A-01D-1462-08	27512707	49179737	106090823	73	21606											
MAGEE1	57692	broad.mit.edu;hgsc.bcm.edu	37	X	75649863	75649863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	75649863	G	T	75649863	4	4	365	1	0	0	0	0	0	1	0	0	9192	1175	41	4	1542	4	MAGEE1	23	75649863	Nonsense_Mutation	SNP	G	TCGA-BP-4967-01A-01D-1462-08	26470126	75649863	79620697	74	21607											
ITM2A	9452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	78618083	78618083	+	Silent	SNP	G	G	A	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	A	78618083	G	A	78618083	2	1	365	1	0	0	0	0	0	0	0	1	7919	1020	36	2		2	ITM2A	23	78618083	Silent	SNP	G	TCGA-BP-4967-01A-01D-1462-08	2968220	78618083	76652477	75	21608											
GPRASP1	9737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101912814	101912815	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	T	101912815	-	T	101912814	7	5	365	1	0	1	1	0	0	0	0	0	6729	681	24	0	3975	0	GPRASP1	23	101912814	Frame_Shift_Ins	INS	-	TCGA-BP-4967-01A-01D-1462-08	23294731	101912814	53357746	76	21609											
SLITRK4	139065	hgsc.bcm.edu	37	X	142717055	142717058	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-BP-4967-01A-01D-1462-08	TCGA-BP-4967-11A-01D-1462-08	TACT	TACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75866d14-47d5-4560-a5a0-32ba3e15ac63	dd634438-8fad-4ff4-b306-f372c978a350	-	142717058	TACT	-	142717055	7	5	365	1	0	1	0	1	0	0	0	0	14758	1406	49	0	647	0	SLITRK4	23	142717055	Frame_Shift_Del	DEL	TACT	TCGA-BP-4967-01A-01D-1462-08	40804241	142717055	12553505	77	21610											
PLEKHG5	57449	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	6532596	6532596	+	Silent	SNP	C	C	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	6532596	C	G	6532596	2	3	366	1	0	0	0	0	0	0	0	1	12080	813	29	4		4	PLEKHG5	1	6532596	Silent	SNP	C	TCGA-BP-4968-01A-01D-1462-08		6532596	242718025	1	21611											
VPS13D	55187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12336481	12336481	+	Missense_Mutation	SNP	C	C	T	rs41279448	bycluster;byfrequency;by1000genomes	TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	12336481	C	T	12336481	3	4	366	1	0	0	0	0	1	0	0	0	17204	652	23	1	2906	1	VPS13D	1	12336481	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08	5803885	12336481	236914140	2	21612											
EPHA8	2046	broad.mit.edu;hgsc.bcm.edu	37	1	22920118	22920118	+	Silent	SNP	C	C	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	22920118	C	G	22920118	2	3	366	1	0	0	0	0	0	0	0	1	5175	610	22	4		4	EPHA8	1	22920118	Silent	SNP	C	TCGA-BP-4968-01A-01D-1462-08	10583637	22920118	226330503	3	21613											
PROX1	5629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	214171381	214171381	+	Silent	SNP	C	C	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	214171381	C	T	214171381	2	4	366	1	0	0	0	0	0	0	0	1	12570	639	23	1		1	PROX1	1	214171381	Silent	SNP	C	TCGA-BP-4968-01A-01D-1462-08	191251263	214171381	35079240	4	21614											
TTC13	79573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	231076263	231076263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	231076263	C	A	231076263	3	1	366	1	0	0	0	0	1	0	0	0	16692	826	29	4	1938	4	TTC13	1	231076263	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08	16904882	231076263	18174358	5	21615											
ZFP36L2	678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	43452170	43452170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	43452170	A	G	43452170	3	3	366	1	0	0	0	0	1	0	0	0	17659	304	11	3	715	3	ZFP36L2	2	43452170	Missense_Mutation	SNP	A	TCGA-BP-4968-01A-01D-1462-08		43452170	199747203	6	21616											
CCDC142	84865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	74709054	74709054	+	Missense_Mutation	SNP	T	T	G	rs138040614	alternate_allele	TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	74709054	T	G	74709054	3	3	366	1	0	0	0	0	1	0	0	0	2778	1812	63	5	1356	5	CCDC142	2	74709054	Missense_Mutation	SNP	T	TCGA-BP-4968-01A-01D-1462-08	31256884	74709054	168490319	7	21617											
TADA3	10474	broad.mit.edu	37	3	9825848	9825848	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	9825848	A	A	9825848	3	1	366	1	0	0	0	0	1	0	0	0	15524	710	25	4	340	4	TADA3	3	9825848	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08		9825848	188196582	8	21618											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183734	10183734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	10183734	C	A	10183734	4	1	366	1	0	0	0	0	0	1	0	0	17174	893	31	4	205	4	VHL	3	10183734	Nonsense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08	357886	10183734	187838696	9	21619											
PRDM5	11107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	121828700	121828700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	121828700	C	T	121828700	3	4	366	1	0	0	0	0	1	0	0	0	12470	661	23	1	1846	1	PRDM5	4	121828700	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08		121828700	69325576	10	21620											
ELF2	1998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	139983076	139983076	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	139983076	C	T	139983076	4	4	366	1	0	0	0	0	0	1	0	0	5056	595	21	2	1044	2	ELF2	4	139983076	Nonsense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08	18154376	139983076	51171200	11	21621											
OTUD4	54726	hgsc.bcm.edu	37	4	146063397	146063398	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	146063398	-	G	146063397	7	5	366	1	0	1	1	0	0	0	0	0	11321	1567	55	0	1587	0	OTUD4	4	146063397	Frame_Shift_Ins	INS	-	TCGA-BP-4968-01A-01D-1462-08	6080321	146063397	45090879	12	21622											
ADAM29	11086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	175896895	175896895	+	Silent	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	175896895	G	A	175896895	2	1	366	1	0	0	0	0	0	0	0	1	247	1368	48	2		2	ADAM29	4	175896895	Silent	SNP	G	TCGA-BP-4968-01A-01D-1462-08	29833498	175896895	15257381	13	21623											
CDH12	1010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	21752149	21752149	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	21752149	T	A	21752149	3	1	366	1	0	0	0	0	1	0	0	0	3100	1722	60	5	306	5	CDH12	5	21752149	Missense_Mutation	SNP	T	TCGA-BP-4968-01A-01D-1462-08		21752149	159163111	14	21624											
C5orf42	65250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	37186442	37186442	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	C	37186442	A	C	37186442	3	2	366	1	0	0	0	0	1	0	0	0	2303	11	1	5	5574	5	C5orf42	5	37186442	Missense_Mutation	SNP	A	TCGA-BP-4968-01A-01D-1462-08	15434293	37186442	143728818	15	21625											
AQPEP	206338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	115323525	115323525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	115323525	C	T	115323525	3	4	366	1	0	0	0	0	1	0	0	0	834	643	23	1	1008	1	AQPEP	5	115323525	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08	78137083	115323525	65591735	16	21626											
HIST1H2BC	8347	hgsc.bcm.edu	37	6	26124127	26124127	+	Silent	SNP	A	A	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	26124127	A	G	26124127	2	3	366	1	0	0	0	0	0	0	0	1	7149	175	7	3		3	HIST1H2BC	6	26124127	Silent	SNP	A	TCGA-BP-4968-01A-01D-1462-08		26124127	144990940	17	21627											
NRCAM	4897	hgsc.bcm.edu;ucsc.edu	37	7	107834765	107834766	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	TA	107834766	-	TA	107834765	7	5	366	1	0	1	1	0	0	0	0	0	10651	1145	40	0	2445	0	NRCAM	7	107834765	Frame_Shift_Ins	INS	-	TCGA-BP-4968-01A-01D-1462-08		107834765	51303898	18	21628											
ZNF800	168850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127013721	127013721	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	127013721	C	G	127013721	3	3	366	1	0	0	0	0	1	0	0	0	18181	922	32	4	333	4	ZNF800	7	127013721	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08	19178956	127013721	32124942	19	21629											
ATP6V1B2	526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	20077883	20077883	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	20077883	A	T	20077883	3	4	366	1	0	0	0	0	1	0	0	0	1179	98	4	5	1560	5	ATP6V1B2	8	20077883	Missense_Mutation	SNP	A	TCGA-BP-4968-01A-01D-1462-08		20077883	126286139	20	21630											
SECISBP2	79048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	91972394	91972394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	91972394	G	A	91972394	3	1	366	1	0	0	0	0	1	0	0	0	14019	1319	46	2	2240	2	SECISBP2	9	91972394	Missense_Mutation	SNP	G	TCGA-BP-4968-01A-01D-1462-08		91972394	49241037	21	21631											
ABCA2	20	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139906470	139906470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	139906470	C	T	139906470	3	4	366	1	0	0	0	0	1	0	0	0	32	753	26	2	2009	2	ABCA2	9	139906470	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08	47934076	139906470	1306961	22	21632											
MARCH8	220972	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	45959707	45959707	+	Silent	SNP	T	T	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	45959707	T	A	45959707	2	1	366	1	0	0	0	0	0	0	0	1	9314	1451	51	5		5	MARCH8	10	45959707	Silent	SNP	T	TCGA-BP-4968-01A-01D-1462-08		45959707	89575040	23	21633											
ADAMTS14	140766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	72493772	72493772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	72493772	G	A	72493772	3	1	366	1	0	0	0	0	1	0	0	0	259	971	34	2	1379	2	ADAMTS14	10	72493772	Missense_Mutation	SNP	G	TCGA-BP-4968-01A-01D-1462-08	26534065	72493772	63040975	24	21634											
PDE3B	5140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	14852297	14852297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	14852297	C	A	14852297	3	1	366	1	0	0	0	0	1	0	0	0	11645	479	17	4	1891	4	PDE3B	11	14852297	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08		14852297	120154219	25	21635											
SLC22A6	9356	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62744739	62744739	+	Silent	SNP	A	A	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	62744739	A	G	62744739	2	3	366	1	0	0	0	0	0	0	0	1	14471	175	7	3		3	SLC22A6	11	62744739	Silent	SNP	A	TCGA-BP-4968-01A-01D-1462-08	47892442	62744739	72261777	26	21636											
FAM168A	23201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	73130927	73130927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	73130927	G	A	73130927	3	1	366	1	0	0	0	0	1	0	0	0	5489	1087	38	1	454	1	FAM168A	11	73130927	Missense_Mutation	SNP	G	TCGA-BP-4968-01A-01D-1462-08	10386188	73130927	61875589	27	21637											
APOBEC1	339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7807218	7807218	+	Silent	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	7807218	G	A	7807218	2	1	366	1	0	0	0	0	0	0	0	1	787	1103	39	1		1	APOBEC1	12	7807218	Silent	SNP	G	TCGA-BP-4968-01A-01D-1462-08		7807218	126044677	28	21638											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53673565	53673565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	53673565	G	T	53673565	3	4	366	1	0	0	0	0	1	0	0	0	5255	942	33	4	2456	4	ESPL1	12	53673565	Missense_Mutation	SNP	G	TCGA-BP-4968-01A-01D-1462-08	45866347	53673565	80178330	29	21639											
SIRT4	23409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	120741603	120741603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	120741603	G	T	120741603	3	4	366	1	0	0	0	0	1	0	0	0	14353	1232	43	4	241	4	SIRT4	12	120741603	Missense_Mutation	SNP	G	TCGA-BP-4968-01A-01D-1462-08	67068038	120741603	13110292	30	21640											
PNP	4860	broad.mit.edu;hgsc.bcm.edu	37	14	20940624	20940624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	20940624	C	T	20940624	3	4	366	1	0	0	0	0	1	0	0	0	12170	855	30	2	175	2	PNP	14	20940624	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08		20940624	86408916	31	21641											
CDH24	64403	broad.mit.edu;hgsc.bcm.edu	37	14	23522709	23522709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	C	23522709	T	C	23522709	3	2	366	1	0	0	0	0	1	0	0	0	3111	1493	52	3	1265	3	CDH24	14	23522709	Missense_Mutation	SNP	T	TCGA-BP-4968-01A-01D-1462-08	2582085	23522709	83826831	32	21642											
PAX9	5083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	37132609	37132609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	37132609	C	T	37132609	3	4	366	1	0	0	0	0	1	0	0	0	11493	739	26	2	518	2	PAX9	14	37132609	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08	13609900	37132609	70216931	33	21643											
RFX7	64864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	56395867	56395867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	56395867	T	A	56395867	3	1	366	1	0	0	0	0	1	0	0	0	13281	1565	54	5	3999	5	RFX7	15	56395867	Missense_Mutation	SNP	T	TCGA-BP-4968-01A-01D-1462-08		56395867	46135525	34	21644											
HMG20A	10363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	77763256	77763256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	77763256	A	G	77763256	3	3	366	1	0	0	0	0	1	0	0	0	7228	391	14	3	469	3	HMG20A	15	77763256	Missense_Mutation	SNP	A	TCGA-BP-4968-01A-01D-1462-08	21367389	77763256	24768136	35	21645											
MYH2	4620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10432798	10432798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	10432798	G	A	10432798	3	1	366	1	0	0	0	0	1	0	0	0	10042	985	34	2	2771	2	MYH2	17	10432798	Missense_Mutation	SNP	G	TCGA-BP-4968-01A-01D-1462-08		10432798	70762412	36	21646											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11845736	11845736	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	11845736	T	A	11845736	4	1	366	1	0	0	0	0	0	1	0	0	4610	1702	59	5	13043	5	DNAH9	17	11845736	Nonsense_Mutation	SNP	T	TCGA-BP-4968-01A-01D-1462-08	1412938	11845736	69349474	37	21647											
C17orf66	256957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34190556	34190556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	34190556	G	A	34190556	3	1	366	1	0	0	0	0	1	0	0	0	1876	1029	36	2	1173	2	C17orf66	17	34190556	Missense_Mutation	SNP	G	TCGA-BP-4968-01A-01D-1462-08	22344820	34190556	47004654	38	21648											
ACLY	47	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40061042	40061042	+	Silent	SNP	G	G	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	40061042	G	T	40061042	2	4	366	1	0	0	0	0	0	0	0	1	143	1333	46	4		4	ACLY	17	40061042	Silent	SNP	G	TCGA-BP-4968-01A-01D-1462-08	5870486	40061042	41134168	39	21649											
KCNH4	23415	broad.mit.edu;ucsc.edu	37	17	40330118	40330118	+	Silent	SNP	A	G	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	40330118	G	G	40330118	2	3	366	1	0	0	0	0	0	0	0	1	8041	231	8	3		3	KCNH4	17	40330118	Silent	SNP	A	TCGA-BP-4968-01A-01D-1462-08	269076	40330118	40865092	40	21650											
ABCA5	23461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	67302951	67302951	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	T	67302951	A	T	67302951	3	4	366	1	0	0	0	0	1	0	0	0	35	72	3	5	4361	5	ABCA5	17	67302951	Missense_Mutation	SNP	A	TCGA-BP-4968-01A-01D-1462-08	26972833	67302951	13892259	41	21651											
RNF213	57674	hgsc.bcm.edu;ucsc.edu	37	17	78343583	78343584	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	78343584	-	A	78343583	7	5	366	1	0	1	1	0	0	0	0	0	13490	478	17	0	12838	0	RNF213	17	78343583	Frame_Shift_Ins	INS	-	TCGA-BP-4968-01A-01D-1462-08	11040632	78343583	2851627	42	21652											
XAB2	56949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7688070	7688070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	G	7688070	C	G	7688070	3	3	366	1	0	0	0	0	1	0	0	0	17430	661	23	4	1386	4	XAB2	19	7688070	Missense_Mutation	SNP	C	TCGA-BP-4968-01A-01D-1462-08		7688070	51440913	43	21653											
TSKS	60385	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50266419	50266419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	50266419	G	A	50266419	3	1	366	1	0	0	0	0	1	0	0	0	16638	1174	41	2	1736	2	TSKS	19	50266419	Missense_Mutation	SNP	G	TCGA-BP-4968-01A-01D-1462-08	42578349	50266419	8862564	44	21654											
MMP9	4318	hgsc.bcm.edu;ucsc.edu	37	20	44641977	44641977	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	-	44641977	C	-	44641977	7	5	366	1	0	1	0	1	0	0	0	0	9676	507	18	0	1448	0	MMP9	20	44641977	Frame_Shift_Del	DEL	C	TCGA-BP-4968-01A-01D-1462-08		44641977	18383543	45	21655											
SYNJ1	8867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34099147	34099147	+	Silent	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	34099147	G	A	34099147	2	1	366	1	0	0	0	0	0	0	0	1	15464	1277	45	2		2	SYNJ1	21	34099147	Silent	SNP	G	TCGA-BP-4968-01A-01D-1462-08		34099147	14030748	46	21656											
SEZ6L	23544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	26693016	26693016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4968-01A-01D-1462-08	TCGA-BP-4968-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d777d5ec-4632-446e-aeac-8ae3e5273fe2	4833d13e-8856-4646-a528-49cf6c34cd82	A	26693016	G	A	26693016	3	1	366	1	0	0	0	0	1	0	0	0	14156	1116	39	1	1146	1	SEZ6L	22	26693016	Missense_Mutation	SNP	G	TCGA-BP-4968-01A-01D-1462-08		26693016	24611550	47	21657											
EPHA8	2046	broad.mit.edu;hgsc.bcm.edu	37	1	22902833	22902833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	22902833	C	T	22902833	3	4	367	1	0	0	0	0	1	0	0	0	5175	643	23	1	293	1	EPHA8	1	22902833	Missense_Mutation	SNP	C	TCGA-BP-4970-01A-01D-1462-08		22902833	226347788	1	21658											
POGZ	23126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151380970	151380970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	151380970	G	T	151380970	3	4	367	1	0	0	0	0	1	0	0	0	12193	1261	44	4	2107	4	POGZ	1	151380970	Missense_Mutation	SNP	G	TCGA-BP-4970-01A-01D-1462-08	128478137	151380970	97869651	2	21659											
NT5C1B	93034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	18757590	18757590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	G	18757590	A	G	18757590	3	3	367	1	0	0	0	0	1	0	0	0	10693	362	13	3	471	3	NT5C1B	2	18757590	Missense_Mutation	SNP	A	TCGA-BP-4970-01A-01D-1462-08		18757590	224441783	3	21660											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188321	10188321	+	Splice_Site	SNP	G	G	T	rs5030814	bycluster;alternate_allele	TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	10188321	G	T	10188321	5	4	367	1	0	0	0	0	0	0	1	0	17174	1275	44	4	470	4	VHL	3	10188321	Splice_Site	SNP	G	TCGA-BP-4970-01A-01D-1462-08		10188321	187834109	4	21661											
ZBTB38	253461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	141161609	141161609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	C	141161609	T	C	141161609	3	2	367	1	0	0	0	0	1	0	0	0	17551	1609	56	3	381	3	ZBTB38	3	141161609	Missense_Mutation	SNP	T	TCGA-BP-4970-01A-01D-1462-08	130973288	141161609	56860821	5	21662											
PROM1	8842	broad.mit.edu	37	4	16020105	16020105	+	Silent	SNP	G	A	A	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	A	16020105	A	A	16020105	2	1	367	1	0	0	0	0	0	0	0	1	12565	1252	44	2		2	PROM1	4	16020105	Silent	SNP	G	TCGA-BP-4970-01A-01D-1462-08		16020105	175134171	6	21663											
PCDHA2	56146	broad.mit.edu;hgsc.bcm.edu	37	5	140176057	140176057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	140176057	C	T	140176057	3	4	367	1	0	0	0	0	1	0	0	0	11531	768	27	1	1510	1	PCDHA2	5	140176057	Missense_Mutation	SNP	C	TCGA-BP-4970-01A-01D-1462-08		140176057	40739203	7	21664											
HSD17B8	7923	broad.mit.edu;hgsc.bcm.edu	37	6	33173664	33173664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	G	33173664	A	G	33173664	3	3	367	1	0	0	0	0	1	0	0	0	7396	14	1	3	648	3	HSD17B8	6	33173664	Missense_Mutation	SNP	A	TCGA-BP-4970-01A-01D-1462-08		33173664	137941403	8	21665											
COL19A1	1310	broad.mit.edu;ucsc.edu	37	6	70733567	70733567	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	70733567	T	T	70733567	4	4	367	1	0	0	0	0	0	1	0	0	3678	943	33	4	1117	4	COL19A1	6	70733567	Nonsense_Mutation	SNP	G	TCGA-BP-4970-01A-01D-1462-08	37559903	70733567	100381500	9	21666											
EXOC4	60412	broad.mit.edu;ucsc.edu	37	7	133059626	133059626	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	A	133059626	A	A	133059626	3	1	367	1	0	0	0	0	1	0	0	0	5308	797	28	4	1078	4	EXOC4	7	133059626	Missense_Mutation	SNP	C	TCGA-BP-4970-01A-01D-1462-08		133059626	26079037	10	21667											
UBE3C	9690	broad.mit.edu;hgsc.bcm.edu	37	7	156967613	156967613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	G	156967613	A	G	156967613	3	3	367	1	0	0	0	0	1	0	0	0	16893	347	12	3	361	3	UBE3C	7	156967613	Missense_Mutation	SNP	A	TCGA-BP-4970-01A-01D-1462-08	23907987	156967613	2171050	11	21668											
PPP3CC	5533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	22370886	22370886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	G	22370886	T	G	22370886	3	3	367	1	0	0	0	0	1	0	0	0	12409	1461	51	5	733	5	PPP3CC	8	22370886	Missense_Mutation	SNP	T	TCGA-BP-4970-01A-01D-1462-08		22370886	123993136	12	21669											
C8orf84	0	hgsc.bcm.edu	37	8	74005131	74005131	+	Missense_Mutation	SNP	A	A	G	rs59331088	bycluster;by1000genomes	TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	G	74005131	A	G	74005131	3	3	367	1	0	0	0	0	1	0	0	0	2442	72	3	3	642	3	C8orf84	8	74005131	Missense_Mutation	SNP	A	TCGA-BP-4970-01A-01D-1462-08	51634245	74005131	72358891	13	21670											
MTDH	92140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	98703207	98703207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	G	98703207	C	G	98703207	3	3	367	1	0	0	0	0	1	0	0	0	9924	565	20	4	861	4	MTDH	8	98703207	Missense_Mutation	SNP	C	TCGA-BP-4970-01A-01D-1462-08	24698076	98703207	47660815	14	21671											
CSTF2T	23283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	53458229	53458229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	53458229	C	T	53458229	3	4	367	1	0	0	0	0	1	0	0	0	3987	623	22	2	773	2	CSTF2T	10	53458229	Missense_Mutation	SNP	C	TCGA-BP-4970-01A-01D-1462-08		53458229	82076518	15	21672											
TRIM5	85363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5687233	5687233	+	Silent	SNP	T	T	C	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	C	5687233	T	C	5687233	2	2	367	1	0	0	0	0	0	0	0	1	16537	1606	56	3		3	TRIM5	11	5687233	Silent	SNP	T	TCGA-BP-4970-01A-01D-1462-08		5687233	129319283	16	21673											
SF3B2	10992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65822560	65822560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	A	65822560	C	A	65822560	3	1	367	1	0	0	0	0	1	0	0	0	14164	623	22	4	286	4	SF3B2	11	65822560	Missense_Mutation	SNP	C	TCGA-BP-4970-01A-01D-1462-08	60135327	65822560	69183956	17	21674											
DDN	23109	broad.mit.edu	37	12	49390707	49390707	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	A	49390707	A	A	49390707	3	1	367	1	0	0	0	0	1	0	0	0	4335	1203	42	2	187	2	DDN	12	49390707	Missense_Mutation	SNP	G	TCGA-BP-4970-01A-01D-1462-08		49390707	84461188	18	21675											
PRKAG1	5571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49396983	49396983	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	G	49396983	T	G	49396983	3	3	367	1	0	0	0	0	1	0	0	0	12510	1821	63	5	171	5	PRKAG1	12	49396983	Missense_Mutation	SNP	T	TCGA-BP-4970-01A-01D-1462-08	6276	49396983	84454912	19	21676											
SOAT2	8435	hgsc.bcm.edu;ucsc.edu	37	12	53516966	53516966	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	-	53516966	T	-	53516966	7	5	367	1	0	1	0	1	0	0	0	0	14924	1442	50	0	1388	0	SOAT2	12	53516966	Frame_Shift_Del	DEL	T	TCGA-BP-4970-01A-01D-1462-08	4119983	53516966	80334929	20	21677											
C13orf26	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	31526903	31526903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	31526903	G	T	31526903	3	4	367	1	0	0	0	0	1	0	0	0	1724	942	33	4	263	4	C13orf26	13	31526903	Missense_Mutation	SNP	G	TCGA-BP-4970-01A-01D-1462-08		31526903	83642975	21	21678											
UGGT2	55757	hgsc.bcm.edu;ucsc.edu	37	13	96589247	96589247	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	-	96589247	T	-	96589247	7	5	367	1	0	1	0	1	0	0	0	0	16954	1606	56	0	2734	0	UGGT2	13	96589247	Frame_Shift_Del	DEL	T	TCGA-BP-4970-01A-01D-1462-08	65062344	96589247	18580631	22	21679											
FSCB	84075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	44975908	44975908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	44975908	C	T	44975908	3	4	367	1	0	0	0	0	1	0	0	0	6073	835	29	2	2198	2	FSCB	14	44975908	Missense_Mutation	SNP	C	TCGA-BP-4970-01A-01D-1462-08		44975908	62373632	23	21680											
TAF1C	9013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	84215586	84215586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	A	84215586	G	A	84215586	3	1	367	1	0	0	0	0	1	0	0	0	15533	1000	35	2	1837	2	TAF1C	16	84215586	Missense_Mutation	SNP	G	TCGA-BP-4970-01A-01D-1462-08		84215586	6139167	24	21681											
C17orf66	256957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34182253	34182253	+	Silent	SNP	T	T	C	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	C	34182253	T	C	34182253	2	2	367	1	0	0	0	0	0	0	0	1	1876	1606	56	3		3	C17orf66	17	34182253	Silent	SNP	T	TCGA-BP-4970-01A-01D-1462-08		34182253	47012957	25	21682											
OSBPL7	114881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	45894652	45894652	+	Silent	SNP	G	G	A	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	A	45894652	G	A	45894652	2	1	367	1	0	0	0	0	0	0	0	1	11289	1164	41	2		2	OSBPL7	17	45894652	Silent	SNP	G	TCGA-BP-4970-01A-01D-1462-08	11712399	45894652	35300558	26	21683											
ACSF2	80221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48539834	48539834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	C	48539834	T	C	48539834	3	2	367	1	0	0	0	0	1	0	0	0	175	1580	55	3	702	3	ACSF2	17	48539834	Missense_Mutation	SNP	T	TCGA-BP-4970-01A-01D-1462-08	2645182	48539834	32655376	27	21684											
MKS1	54903	broad.mit.edu;hgsc.bcm.edu	37	17	56283522	56283522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	56283522	C	T	56283522	3	4	367	1	0	0	0	0	1	0	0	0	9616	536	19	1	85	1	MKS1	17	56283522	Missense_Mutation	SNP	C	TCGA-BP-4970-01A-01D-1462-08	7743688	56283522	24911688	28	21685											
DNAH17	8632	hgsc.bcm.edu	37	17	76486812	76486813	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	-	76486813	AG	-	76486812	7	5	367	1	0	1	0	1	0	0	0	0	4603	420	15	0	6753	0	DNAH17	17	76486812	Frame_Shift_Del	DEL	AG	TCGA-BP-4970-01A-01D-1462-08	20203290	76486812	4708398	29	21686											
SHC2	25759	hgsc.bcm.edu	37	19	434718	434718	+	Silent	SNP	G	G	A	rs61749991	bycluster;byfrequency;by1000genomes	TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	A	434718	G	A	434718	2	1	367	1	0	0	0	0	0	0	0	1	14284	1219	43	2		2	SHC2	19	434718	Silent	SNP	G	TCGA-BP-4970-01A-01D-1462-08		434718	58694265	30	21687											
B3GNT3	10331	broad.mit.edu	37	19	17918663	17918663	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	A	17918663	A	A	17918663	3	1	367	1	0	0	0	0	1	0	0	0	1258	739	26	4	49	4	B3GNT3	19	17918663	Missense_Mutation	SNP	C	TCGA-BP-4970-01A-01D-1462-08	17483945	17918663	41210320	31	21688											
DMKN	93099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36003526	36003526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	G	36003526	T	G	36003526	3	3	367	1	0	0	0	0	1	0	0	0	4584	1493	52	5	1214	5	DMKN	19	36003526	Missense_Mutation	SNP	T	TCGA-BP-4970-01A-01D-1462-08	18084863	36003526	23125457	32	21689											
LILRA6	79168	hgsc.bcm.edu	37	19	54744772	54744772	+	Missense_Mutation	SNP	T	T	G	rs77717986		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	G	54744772	T	G	54744772	3	3	367	1	0	0	0	0	1	0	0	0	8796	1406	49	5	571	5	LILRA6	19	54744772	Missense_Mutation	SNP	T	TCGA-BP-4970-01A-01D-1462-08	18741246	54744772	4384211	33	21690	263	2									
LILRA6	79168	hgsc.bcm.edu	37	19	54744777	54744777	+	Silent	SNP	C	C	T	rs76127474		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	54744777	C	T	54744777	2	4	367	1	0	0	0	0	0	0	0	1	8796	506	18	2		2	LILRA6	19	54744777	Silent	SNP	C	TCGA-BP-4970-01A-01D-1462-08	5	54744777	4384206	34	21691	263	2									
TRIM28	10155	broad.mit.edu	37	19	59060112	59060112	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	A	59060112	A	A	59060112	3	1	367	1	0	0	0	0	1	0	0	0	16514	1348	47	2	1367	2	TRIM28	19	59060112	Missense_Mutation	SNP	G	TCGA-BP-4970-01A-01D-1462-08	4315335	59060112	68871	35	21692											
PIGU	128869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33225754	33225754	+	Silent	SNP	C	C	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	33225754	C	T	33225754	2	4	367	1	0	0	0	0	0	0	0	1	11907	564	20	2		2	PIGU	20	33225754	Silent	SNP	C	TCGA-BP-4970-01A-01D-1462-08		33225754	29799766	36	21693											
ACOT8	10005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44477168	44477168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	44477168	G	T	44477168	3	4	367	1	0	0	0	0	1	0	0	0	156	1328	46	4	566	4	ACOT8	20	44477168	Missense_Mutation	SNP	G	TCGA-BP-4970-01A-01D-1462-08	11251414	44477168	18548352	37	21694											
SLC12A5	57468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44669098	44669098	+	Silent	SNP	C	C	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	44669098	C	T	44669098	2	4	367	1	0	0	0	0	0	0	0	1	14399	547	19	1		1	SLC12A5	20	44669098	Silent	SNP	C	TCGA-BP-4970-01A-01D-1462-08	191930	44669098	18356422	38	21695											
INPP5J	27124	broad.mit.edu	37	22	31520974	31520974	+	Silent	SNP	A	T	T	novel		TCGA-BP-4970-01A-01D-1462-08	TCGA-BP-4970-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	205e81c6-235a-450f-b1f8-80c518eb3478	aeb90fcf-ea28-4119-a410-9e7ce8ddcbc9	T	31520974	T	T	31520974	2	4	367	1	0	0	0	0	0	0	0	1	7766	290	10	5		5	INPP5J	22	31520974	Silent	SNP	A	TCGA-BP-4970-01A-01D-1462-08		31520974	19783592	39	21696											
PDPN	10630	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	13936955	13936955	+	Missense_Mutation	SNP	C	C	T	rs189019995	by1000genomes	TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	13936955	C	T	13936955	3	4	368	1	0	0	0	0	1	0	0	0	11695	768	27	1	513	1	PDPN	1	13936955	Missense_Mutation	SNP	C	TCGA-BP-4971-01A-01D-1462-08		13936955	235313666	1	21697											
TNN	63923	broad.mit.edu;hgsc.bcm.edu	37	1	175046949	175046949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	175046949	G	A	175046949	3	1	368	1	0	0	0	0	1	0	0	0	16335	1319	46	2	397	2	TNN	1	175046949	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	161109994	175046949	74203672	2	21698											
CAMSAP1L1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200817766	200817766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	200817766	G	A	200817766	3	1	368	1	0	0	0	0	1	0	0	0	2614	1348	47	2	1911	2	CAMSAP1L1	1	200817766	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	25770817	200817766	48432855	3	21699	264	2									
CAMSAP1L1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200817767	200817767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	200817767	G	T	200817767	3	4	368	1	0	0	0	0	1	0	0	0	2614	1174	41	4	1912	4	CAMSAP1L1	1	200817767	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	1	200817767	48432854	4	21700	264	2									
GIGYF2	26058	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	233677188	233677188	+	Silent	SNP	T	T	C	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	C	233677188	T	C	233677188	2	2	368	1	0	0	0	0	0	0	0	1	6385	1596	56	3		3	GIGYF2	2	233677188	Silent	SNP	T	TCGA-BP-4971-01A-01D-1462-08		233677188	9522185	5	21701											
GBX2	2637	broad.mit.edu	37	2	237076138	237076138	+	Silent	SNP	G	A	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	237076138	A	A	237076138	2	1	368	1	0	0	0	0	0	0	0	1	6288	958	34	2		2	GBX2	2	237076138	Silent	SNP	G	TCGA-BP-4971-01A-01D-1462-08	3398950	237076138	6123235	6	21702											
IQSEC1	9922	broad.mit.edu	37	3	12949880	12949880	+	Silent	SNP	G	T	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	12949880	T	T	12949880	2	4	368	1	0	0	0	0	0	0	0	1	7824	1277	45	4		4	IQSEC1	3	12949880	Silent	SNP	G	TCGA-BP-4971-01A-01D-1462-08		12949880	185072550	7	21703											
KAT2B	8850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	20153265	20153265	+	Silent	SNP	C	C	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	20153265	C	T	20153265	2	4	368	1	0	0	0	0	0	0	0	1	7989	813	29	2		2	KAT2B	3	20153265	Silent	SNP	C	TCGA-BP-4971-01A-01D-1462-08	7203385	20153265	177869165	8	21704											
KBTBD8	84541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	67054477	67054477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	67054477	G	T	67054477	3	4	368	1	0	0	0	0	1	0	0	0	8006	1377	48	4	1096	4	KBTBD8	3	67054477	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	46901212	67054477	130967953	9	21705											
RPL22L1	200916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	170584196	170584196	+	Silent	SNP	A	A	G	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	G	170584196	A	G	170584196	2	3	368	1	0	0	0	0	0	0	0	1	13582	214	8	3		3	RPL22L1	3	170584196	Silent	SNP	A	TCGA-BP-4971-01A-01D-1462-08	103529719	170584196	27438234	10	21706											
ALB	213	hgsc.bcm.edu;ucsc.edu	37	4	74283260	74283260	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	-	74283260	T	-	74283260	7	5	368	1	0	1	0	1	0	0	0	0	486	1712	60	0	1344	0	ALB	4	74283260	Frame_Shift_Del	DEL	T	TCGA-BP-4971-01A-01D-1462-08		74283260	116871016	11	21707											
FRAS1	80144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	79369243	79369243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	C	79369243	T	C	79369243	3	2	368	1	0	0	0	0	1	0	0	0	6049	1580	55	3	6296	3	FRAS1	4	79369243	Missense_Mutation	SNP	T	TCGA-BP-4971-01A-01D-1462-08	5085983	79369243	111785033	12	21708											
TERT	7015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	1282650	1282650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	G	1282650	C	G	1282650	3	3	368	1	0	0	0	0	1	0	0	0	15776	893	31	4	1791	4	TERT	5	1282650	Missense_Mutation	SNP	C	TCGA-BP-4971-01A-01D-1462-08		1282650	179632610	13	21709											
ANKH	56172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	14711323	14711323	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	14711323	T	A	14711323	4	1	368	1	0	0	0	0	0	1	0	0	627	1559	54	5	20	5	ANKH	5	14711323	Nonsense_Mutation	SNP	T	TCGA-BP-4971-01A-01D-1462-08	13428673	14711323	166203937	14	21710											
POC5	134359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	74981284	74981284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	74981284	C	A	74981284	3	1	368	1	0	0	0	0	1	0	0	0	12184	680	24	4	584	4	POC5	5	74981284	Missense_Mutation	SNP	C	TCGA-BP-4971-01A-01D-1462-08	60269961	74981284	105933976	15	21711											
PCDHA5	56143	broad.mit.edu	37	5	140201665	140201665	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	140201665	A	A	140201665	3	1	368	1	0	0	0	0	1	0	0	0	11534	971	34	2	307	2	PCDHA5	5	140201665	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	65220381	140201665	40713595	16	21712											
MUC21	394263	broad.mit.edu;hgsc.bcm.edu	37	6	30954884	30954884	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	C	30954884	G	C	30954884	3	2	368	1	0	0	0	0	1	0	0	0	9984	1232	43	4	938	4	MUC21	6	30954884	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08		30954884	140160183	17	21713											
VPS41	27072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	38857441	38857441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	38857441	C	A	38857441	3	1	368	1	0	0	0	0	1	0	0	0	17222	796	28	4	2230	4	VPS41	7	38857441	Missense_Mutation	SNP	C	TCGA-BP-4971-01A-01D-1462-08		38857441	120281222	18	21714											
TRRAP	8295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	98601971	98601971	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	C	98601971	G	C	98601971	3	2	368	1	0	0	0	0	1	0	0	0	16613	971	34	4	10597	4	TRRAP	7	98601971	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	59744530	98601971	60536692	19	21715											
DNAJC2	27000	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	102960089	102960089	+	Silent	SNP	T	T	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	102960089	T	A	102960089	2	1	368	1	0	0	0	0	0	0	0	1	4641	1799	63	5		5	DNAJC2	7	102960089	Silent	SNP	T	TCGA-BP-4971-01A-01D-1462-08	4358118	102960089	56178574	20	21716											
KEL	3792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	142655413	142655413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	142655413	G	A	142655413	3	1	368	1	0	0	0	0	1	0	0	0	8149	1232	43	2	1755	2	KEL	7	142655413	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	39695324	142655413	16483250	21	21717											
DPP6	1804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	154172047	154172047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	C	154172047	A	C	154172047	3	2	368	1	0	0	0	0	1	0	0	0	4732	15	1	5	508	5	DPP6	7	154172047	Missense_Mutation	SNP	A	TCGA-BP-4971-01A-01D-1462-08	11516634	154172047	4966616	22	21718											
WNK2	65268	broad.mit.edu;ucsc.edu	37	9	96002217	96002217	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	96002217	T	T	96002217	3	4	368	1	0	0	0	0	1	0	0	0	17390	1058	37	4	1523	4	WNK2	9	96002217	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08		96002217	45211214	23	21719											
ANO3	63982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	26563538	26563538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	26563538	G	T	26563538	3	4	368	1	0	0	0	0	1	0	0	0	698	933	33	4	1119	4	ANO3	11	26563538	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08		26563538	108442978	24	21720											
DPP3	10072	broad.mit.edu;hgsc.bcm.edu	37	11	66255471	66255471	+	Silent	SNP	T	T	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	66255471	T	A	66255471	2	1	368	1	0	0	0	0	0	0	0	1	4730	1799	63	5		5	DPP3	11	66255471	Silent	SNP	T	TCGA-BP-4971-01A-01D-1462-08	39691933	66255471	68751045	25	21721											
RSF1	51773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	77378304	77378304	+	Silent	SNP	C	C	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	77378304	C	T	77378304	2	4	368	1	0	0	0	0	0	0	0	1	13712	622	22	2		2	RSF1	11	77378304	Silent	SNP	C	TCGA-BP-4971-01A-01D-1462-08	11122833	77378304	57628212	26	21722											
SYTL2	54843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	85416035	85416035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	C	85416035	A	C	85416035	3	2	368	1	0	0	0	0	1	0	0	0	15495	98	4	5	684	5	SYTL2	11	85416035	Missense_Mutation	SNP	A	TCGA-BP-4971-01A-01D-1462-08	8037731	85416035	49590481	27	21723											
NOX4	50507	broad.mit.edu;hgsc.bcm.edu	37	11	89135577	89135577	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	89135577	A	T	89135577	3	4	368	1	0	0	0	0	1	0	0	0	10565	101	4	5	1013	5	NOX4	11	89135577	Missense_Mutation	SNP	A	TCGA-BP-4971-01A-01D-1462-08	3719542	89135577	45870939	28	21724											
PZP	5858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9321469	9321469	+	Silent	SNP	A	A	G	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	G	9321469	A	G	9321469	2	3	368	1	0	0	0	0	0	0	0	1	12882	224	8	3		3	PZP	12	9321469	Silent	SNP	A	TCGA-BP-4971-01A-01D-1462-08		9321469	124530426	29	21725											
KRT72	140807	hgsc.bcm.edu;ucsc.edu	37	12	52981581	52981581	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	-	52981581	G	-	52981581	7	5	368	1	0	1	0	1	0	0	0	0	8492	991	35	0	403	0	KRT72	12	52981581	Frame_Shift_Del	DEL	G	TCGA-BP-4971-01A-01D-1462-08	43660112	52981581	80870314	30	21726											
NT5DC3	51559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104186991	104186991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	104186991	C	A	104186991	3	1	368	1	0	0	0	0	1	0	0	0	10699	478	17	4	700	4	NT5DC3	12	104186991	Missense_Mutation	SNP	C	TCGA-BP-4971-01A-01D-1462-08	51205410	104186991	29664904	31	21727											
TRAFD1	10906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	112580008	112580008	+	Silent	SNP	A	A	G	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	G	112580008	A	G	112580008	2	3	368	1	0	0	0	0	0	0	0	1	16459	69	3	3		3	TRAFD1	12	112580008	Silent	SNP	A	TCGA-BP-4971-01A-01D-1462-08	8393017	112580008	21271887	32	21728											
OR4K15	81127	broad.mit.edu;ucsc.edu	37	14	20444219	20444219	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	20444219	T	T	20444219	3	4	368	1	0	0	0	0	1	0	0	0	11077	507	18	2	544	2	OR4K15	14	20444219	Missense_Mutation	SNP	C	TCGA-BP-4971-01A-01D-1462-08		20444219	86905321	33	21729											
SPG21	51324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65255989	65255989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	65255989	C	A	65255989	3	1	368	1	0	0	0	0	1	0	0	0	15055	797	28	4	31	4	SPG21	15	65255989	Missense_Mutation	SNP	C	TCGA-BP-4971-01A-01D-1462-08		65255989	37275403	34	21730											
KIAA1609	57707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	84516270	84516270	+	Silent	SNP	C	C	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	84516270	C	T	84516270	2	4	368	1	0	0	0	0	0	0	0	1	8254	465	17	2		2	KIAA1609	16	84516270	Silent	SNP	C	TCGA-BP-4971-01A-01D-1462-08		84516270	5838483	35	21731											
C17orf75	64149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30666861	30666861	+	Silent	SNP	C	C	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	30666861	C	A	30666861	2	1	368	1	0	0	0	0	0	0	0	1	1882	726	26	4		4	C17orf75	17	30666861	Silent	SNP	C	TCGA-BP-4971-01A-01D-1462-08		30666861	50528349	36	21732											
ZNF407	55628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	72346684	72346684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	72346684	G	A	72346684	3	1	368	1	0	0	0	0	1	0	0	0	17899	1087	38	1	3711	1	ZNF407	18	72346684	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08		72346684	5730564	37	21733											
SALL3	27164	broad.mit.edu	37	18	76753526	76753526	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	76753526	A	A	76753526	4	1	368	1	0	0	0	0	0	1	0	0	13825	1357	47	2	1541	2	SALL3	18	76753526	Nonsense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	4406842	76753526	1323722	38	21734											
WDR18	57418	broad.mit.edu;ucsc.edu	37	19	990274	990274	+	Silent	SNP	T	A	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	990274	A	A	990274	2	1	368	1	0	0	0	0	0	0	0	1	17290	1538	54	5		5	WDR18	19	990274	Silent	SNP	T	TCGA-BP-4971-01A-01D-1462-08		990274	58138709	39	21735											
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu	37	19	31768041	31768041	+	Silent	SNP	C	C	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	31768041	C	T	31768041	2	4	368	1	0	0	0	0	0	0	0	1	16637	755	27	1		1	TSHZ3	19	31768041	Silent	SNP	C	TCGA-BP-4971-01A-01D-1462-08	30777767	31768041	27360942	40	21736											
PRKD2	25865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	47181735	47181735	+	Silent	SNP	G	G	A	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	A	47181735	G	A	47181735	2	1	368	1	0	0	0	0	0	0	0	1	12529	1136	40	1		1	PRKD2	19	47181735	Silent	SNP	G	TCGA-BP-4971-01A-01D-1462-08	15413694	47181735	11947248	41	21737											
ZNF274	10782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58723904	58723904	+	Silent	SNP	C	C	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	58723904	C	T	58723904	2	4	368	1	0	0	0	0	0	0	0	1	17821	536	19	1		1	ZNF274	19	58723904	Silent	SNP	C	TCGA-BP-4971-01A-01D-1462-08	11542169	58723904	405079	42	21738											
TRMT6	51605	broad.mit.edu;ucsc.edu	37	20	5924213	5924213	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	5924213	T	T	5924213	3	4	368	1	0	0	0	0	1	0	0	0	16580	884	31	1	858	1	TRMT6	20	5924213	Missense_Mutation	SNP	C	TCGA-BP-4971-01A-01D-1462-08		5924213	57101307	43	21739											
ZNF337	26152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	25656758	25656758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	25656758	C	T	25656758	3	4	368	1	0	0	0	0	1	0	0	0	17865	855	30	2	1093	2	ZNF337	20	25656758	Missense_Mutation	SNP	C	TCGA-BP-4971-01A-01D-1462-08	19732545	25656758	37368762	44	21740											
C20orf4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34843594	34843594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	34843594	G	T	34843594	3	4	368	1	0	0	0	0	1	0	0	0	2113	1357	47	4	1092	4	C20orf4	20	34843594	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	9186836	34843594	28181926	45	21741											
SHANK3	85358	broad.mit.edu	37	22	51160606	51160606	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	51160606	T	T	51160606	3	4	368	1	0	0	0	0	1	0	0	0	14279	1087	38	4	4479	4	SHANK3	22	51160606	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08		51160606	143960	46	21742											
ASMT	438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	1748789	1748789	+	Silent	SNP	C	C	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	1748789	C	T	1748789	2	4	368	1	0	0	0	0	0	0	0	1	1045	639	23	1		1	ASMT	23	1748789	Silent	SNP	C	TCGA-BP-4971-01A-01D-1462-08		1748789	153521771	47	21743											
MXRA5	25878	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	3228209	3228209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	T	3228209	G	T	3228209	3	4	368	1	0	0	0	0	1	0	0	0	10010	933	33	4	455	4	MXRA5	23	3228209	Missense_Mutation	SNP	G	TCGA-BP-4971-01A-01D-1462-08	1479420	3228209	152042351	48	21744											
PTCHD1	139411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	23410647	23410647	+	Splice_Site	SNP	G	G	C	novel		TCGA-BP-4971-01A-01D-1462-08	TCGA-BP-4971-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c07945e8-8133-4237-9d1f-18c023bc9d2c	9fa5413f-5599-45cd-9b1b-e425eab73870	C	23410647	G	C	23410647	5	2	368	1	0	0	0	0	0	0	1	0	12742	1014	35	4	1022	4	PTCHD1	23	23410647	Splice_Site	SNP	G	TCGA-BP-4971-01A-01D-1462-08	20182438	23410647	131859913	49	21745											
NPHP4	261734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	5934998	5934998	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	G	5934998	C	G	5934998	3	3	369	1	0	0	0	0	1	0	0	0	10588	478	17	4	1340	4	NPHP4	1	5934998	Missense_Mutation	SNP	C	TCGA-BP-4972-01A-01D-1462-08		5934998	243315623	1	21746											
SLC2A5	6518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	9118229	9118229	+	Silent	SNP	A	A	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	9118229	A	T	9118229	2	4	369	1	0	0	0	0	0	0	0	1	14561	175	7	5		5	SLC2A5	1	9118229	Silent	SNP	A	TCGA-BP-4972-01A-01D-1462-08	3183231	9118229	240132392	2	21747											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu	37	1	11190694	11190694	+	Silent	SNP	G	G	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	11190694	G	A	11190694	2	1	369	1	0	0	0	0	0	0	0	1	9961	1103	39	1		1	MTOR	1	11190694	Silent	SNP	G	TCGA-BP-4972-01A-01D-1462-08	2072465	11190694	238059927	3	21748											
PTCHD2	57540	hgsc.bcm.edu	37	1	11589932	11589933	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	11589933	-	A	11589932	7	5	369	1	0	1	1	0	0	0	0	0	12743	1403	49	0	3072	0	PTCHD2	1	11589932	Frame_Shift_Ins	INS	-	TCGA-BP-4972-01A-01D-1462-08	399238	11589932	237660689	4	21749											
EFNA1	1942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155104091	155104091	+	Silent	SNP	A	A	G	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	G	155104091	A	G	155104091	2	3	369	1	0	0	0	0	0	0	0	1	4952	262	10	3		3	EFNA1	1	155104091	Silent	SNP	A	TCGA-BP-4972-01A-01D-1462-08	143514159	155104091	94146530	5	21750											
B3GALT2	8707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	193150003	193150003	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	G	193150003	T	G	193150003	3	3	369	1	0	0	0	0	1	0	0	0	1248	1838	64	5	582	5	B3GALT2	1	193150003	Missense_Mutation	SNP	T	TCGA-BP-4972-01A-01D-1462-08	38045912	193150003	56100618	6	21751											
NFASC	23114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	204971841	204971841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	C	204971841	T	C	204971841	3	2	369	1	0	0	0	0	1	0	0	0	10366	1435	50	3	3765	3	NFASC	1	204971841	Missense_Mutation	SNP	T	TCGA-BP-4972-01A-01D-1462-08	11821838	204971841	44278780	7	21752											
MSH6	2956	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	48026389	48026389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	48026389	C	A	48026389	3	1	369	1	0	0	0	0	1	0	0	0	9881	913	32	4	1281	4	MSH6	2	48026389	Missense_Mutation	SNP	C	TCGA-BP-4972-01A-01D-1462-08		48026389	195172984	8	21753											
KCNJ3	3760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	155555495	155555495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	155555495	G	T	155555495	3	4	369	1	0	0	0	0	1	0	0	0	8059	1174	41	4	210	4	KCNJ3	2	155555495	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08	107529106	155555495	87643878	9	21754											
TTLL4	9654	hgsc.bcm.edu	37	2	219609933	219609934	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	219609934	-	T	219609933	7	5	369	1	0	1	1	0	0	0	0	0	16741	449	16	0	1777	0	TTLL4	2	219609933	Frame_Shift_Ins	INS	-	TCGA-BP-4972-01A-01D-1462-08	64054438	219609933	23589440	10	21755											
DNAH1	25981	broad.mit.edu;ucsc.edu	37	3	52360871	52360871	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	-	52360871	-	-	52360871	7	5	369	1	0	1	0	1	0	0	0	0	4599	726	26	0	716	0	DNAH1	3	52360871	Frame_Shift_Del	DEL	C	TCGA-BP-4972-01A-01D-1462-08		52360871	145661559	11	21756											
ADAMTS9	56999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	64579996	64579996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	64579996	C	T	64579996	3	4	369	1	0	0	0	0	1	0	0	0	273	835	29	2	1561	2	ADAMTS9	3	64579996	Missense_Mutation	SNP	C	TCGA-BP-4972-01A-01D-1462-08	12219125	64579996	133442434	12	21757											
PPM1L	151742	hgsc.bcm.edu	37	3	160783277	160783277	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	-	160783277	G	-	160783277	7	5	369	1	0	1	0	1	0	0	0	0	12354	942	33	0	671	0	PPM1L	3	160783277	Frame_Shift_Del	DEL	G	TCGA-BP-4972-01A-01D-1462-08	96203281	160783277	37239153	13	21758											
UNC5C	8633	broad.mit.edu;hgsc.bcm.edu	37	4	96127874	96127874	+	Missense_Mutation	SNP	G	G	T	rs139568380	byfrequency;alternate_allele	TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	96127874	G	T	96127874	3	4	369	1	0	0	0	0	1	0	0	0	17005	1116	39	4	1012	4	UNC5C	4	96127874	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08		96127874	95026402	14	21759											
HPGD	3248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	175443219	175443219	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	175443219	C	A	175443219	5	1	369	1	0	0	0	0	0	0	1	0	7341	695	24	4	731	4	HPGD	4	175443219	Splice_Site	SNP	C	TCGA-BP-4972-01A-01D-1462-08	79315345	175443219	15711057	15	21760											
TERT	7015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	1272327	1272327	+	Silent	SNP	C	C	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	1272327	C	A	1272327	2	1	369	1	0	0	0	0	0	0	0	1	15776	755	27	4		4	TERT	5	1272327	Silent	SNP	C	TCGA-BP-4972-01A-01D-1462-08		1272327	179642933	16	21761											
C7	730	broad.mit.edu	37	5	40959677	40959677	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	40959677	T	T	40959677	3	4	369	1	0	0	0	0	1	0	0	0	2377	536	19	1	1662	1	C7	5	40959677	Missense_Mutation	SNP	C	TCGA-BP-4972-01A-01D-1462-08	39687350	40959677	139955583	17	21762											
PCDHA6	56142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140209867	140209867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	140209867	G	A	140209867	3	1	369	1	0	0	0	0	1	0	0	0	11535	1087	38	1	2193	1	PCDHA6	5	140209867	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08	99250190	140209867	40705393	18	21763											
C6orf114	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	13470345	13470345	+	Silent	SNP	T	T	C	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	C	13470345	T	C	13470345	2	2	369	1	0	0	0	0	0	0	0	1	2323	1393	49	3		3	C6orf114	6	13470345	Silent	SNP	T	TCGA-BP-4972-01A-01D-1462-08		13470345	157644722	19	21764											
PACSIN1	29993	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	34499375	34499375	+	Splice_Site	SNP	A	A	C	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	C	34499375	A	C	34499375	5	2	369	1	0	0	0	0	0	0	1	0	11381	202	7	5	1066	5	PACSIN1	6	34499375	Splice_Site	SNP	A	TCGA-BP-4972-01A-01D-1462-08	21029030	34499375	136615692	20	21765											
RIMS1	22999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	72974723	72974723	+	Silent	SNP	A	A	G	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	G	72974723	A	G	72974723	2	3	369	1	0	0	0	0	0	0	0	1	13380	446	16	3		3	RIMS1	6	72974723	Silent	SNP	A	TCGA-BP-4972-01A-01D-1462-08	38475348	72974723	98140344	21	21766											
NUP205	23165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	135261060	135261060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	C	135261060	T	C	135261060	3	2	369	1	0	0	0	0	1	0	0	0	10766	1764	61	3	400	3	NUP205	7	135261060	Missense_Mutation	SNP	T	TCGA-BP-4972-01A-01D-1462-08		135261060	23877603	22	21767											
USP17L2	377630	broad.mit.edu	37	8	11995803	11995803	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	11995803	T	T	11995803	3	4	369	1	0	0	0	0	1	0	0	0	17060	739	26	2	1129	2	USP17L2	8	11995803	Missense_Mutation	SNP	C	TCGA-BP-4972-01A-01D-1462-08		11995803	134368219	23	21768											
CIZ1	25792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130938657	130938657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	130938657	G	A	130938657	3	1	369	1	0	0	0	0	1	0	0	0	3443	1232	43	2	808	2	CIZ1	9	130938657	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08		130938657	10274774	24	21769											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61830323	61830323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	G	61830323	A	G	61830323	3	3	369	1	0	0	0	0	1	0	0	0	622	217	8	3	3158	3	ANK3	10	61830323	Missense_Mutation	SNP	A	TCGA-BP-4972-01A-01D-1462-08		61830323	73704424	25	21770											
RRP12	23223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99116876	99116876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	C	99116876	T	C	99116876	3	2	369	1	0	0	0	0	1	0	0	0	13699	1725	60	3	28	3	RRP12	10	99116876	Missense_Mutation	SNP	T	TCGA-BP-4972-01A-01D-1462-08	37286553	99116876	36417871	26	21771											
TCERG1L	256536	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	132965070	132965070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	132965070	T	A	132965070	3	1	369	1	0	0	0	0	1	0	0	0	15698	1841	64	5	857	5	TCERG1L	10	132965070	Missense_Mutation	SNP	T	TCGA-BP-4972-01A-01D-1462-08	33848194	132965070	2569677	27	21772											
PLEKHA7	144100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	16838611	16838611	+	Silent	SNP	G	G	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	16838611	G	A	16838611	2	1	369	1	0	0	0	0	0	0	0	1	12068	1136	40	1		1	PLEKHA7	11	16838611	Silent	SNP	G	TCGA-BP-4972-01A-01D-1462-08		16838611	118167905	28	21773											
TULP3	7289	hgsc.bcm.edu;ucsc.edu	37	12	3031528	3031528	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	-	3031528	T	-	3031528	7	5	369	1	0	1	0	1	0	0	0	0	16787	1567	55	0	368	0	TULP3	12	3031528	Frame_Shift_Del	DEL	T	TCGA-BP-4972-01A-01D-1462-08		3031528	130820367	29	21774											
PTPRB	5787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	70965011	70965011	+	Silent	SNP	C	C	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	70965011	C	T	70965011	2	4	369	1	0	0	0	0	0	0	0	1	12809	813	29	2		2	PTPRB	12	70965011	Silent	SNP	C	TCGA-BP-4972-01A-01D-1462-08	67933483	70965011	62886884	30	21775											
WASF3	10810	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	27246116	27246116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	27246116	G	T	27246116	3	4	369	1	0	0	0	0	1	0	0	0	17266	1000	35	4	544	4	WASF3	13	27246116	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08		27246116	87923762	31	21776											
SLITRK6	84189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	86370342	86370342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	86370342	G	A	86370342	3	1	369	1	0	0	0	0	1	0	0	0	14760	1319	46	2	2227	2	SLITRK6	13	86370342	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08	59124226	86370342	28799536	32	21777											
C14orf159	80017	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	91636352	91636352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	91636352	G	T	91636352	3	4	369	1	0	0	0	0	1	0	0	0	1757	1203	42	4	273	4	C14orf159	14	91636352	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08		91636352	15713188	33	21778											
TGM5	9333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43552389	43552389	+	Silent	SNP	G	G	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	43552389	G	A	43552389	2	1	369	1	0	0	0	0	0	0	0	1	15845	1335	47	2		2	TGM5	15	43552389	Silent	SNP	G	TCGA-BP-4972-01A-01D-1462-08		43552389	58979003	34	21779											
LRRK1	79705	broad.mit.edu;hgsc.bcm.edu	37	15	101528945	101528945	+	Silent	SNP	G	G	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	101528945	G	A	101528945	2	1	369	1	0	0	0	0	0	0	0	1	9039	1103	39	1		1	LRRK1	15	101528945	Silent	SNP	G	TCGA-BP-4972-01A-01D-1462-08	57976556	101528945	1002447	35	21780											
SALL1	6299	hgsc.bcm.edu;ucsc.edu	37	16	51175662	51175662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	C	51175662	G	C	51175662	3	2	369	1	0	0	0	0	1	0	0	0	13823	1310	46	4	3511	4	SALL1	16	51175662	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08		51175662	39179091	36	21781											
THAP11	57215	hgsc.bcm.edu	37	16	67876820	67876820	+	Silent	SNP	G	G	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	67876820	G	A	67876820	2	1	369	1	0	0	0	0	0	0	0	1	15855	962	34	2		2	THAP11	16	67876820	Silent	SNP	G	TCGA-BP-4972-01A-01D-1462-08	16701158	67876820	22477933	37	21782											
CACNB1	782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37341384	37341384	+	Silent	SNP	C	C	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	37341384	C	T	37341384	2	4	369	1	0	0	0	0	0	0	0	1	2554	666	23	1		1	CACNB1	17	37341384	Silent	SNP	C	TCGA-BP-4972-01A-01D-1462-08		37341384	43853826	38	21783											
HGS	9146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	79667601	79667601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	C	79667601	T	C	79667601	3	2	369	1	0	0	0	0	1	0	0	0	7094	1522	53	3	2061	3	HGS	17	79667601	Missense_Mutation	SNP	T	TCGA-BP-4972-01A-01D-1462-08	42326217	79667601	1527609	39	21784											
ACP5	54	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11687390	11687390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	11687390	G	A	11687390	3	1	369	1	0	0	0	0	1	0	0	0	164	1232	43	2	582	2	ACP5	19	11687390	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08		11687390	47441593	40	21785											
ZNF714	148206	hgsc.bcm.edu	37	19	21300833	21300835	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	-	21300835	GAA	-	21300833	7	5	369	1	0	1	0	1	0	0	0	0	18130	1291	45	0	1373	0	ZNF714	19	21300833	In_Frame_Del	DEL	GAA	TCGA-BP-4972-01A-01D-1462-08	9613443	21300833	37828150	41	21786											
C22orf9	0	broad.mit.edu	37	22	45601765	45601765	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	C	45601765	C	C	45601765	3	2	369	1	0	0	0	0	1	0	0	0	2153	159	6	5	1001	5	C22orf9	22	45601765	Missense_Mutation	SNP	A	TCGA-BP-4972-01A-01D-1462-08		45601765	5702801	42	21787											
GPRASP1	9737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101910199	101910199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	101910199	G	T	101910199	3	4	369	1	0	0	0	0	1	0	0	0	6729	1029	36	4	1360	4	GPRASP1	23	101910199	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08		101910199	53360361	43	21788											
COL4A5	1287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107868987	107868987	+	Silent	SNP	T	T	G	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	G	107868987	T	G	107868987	2	3	369	1	0	0	0	0	0	0	0	1	3696	1567	55	5		5	COL4A5	23	107868987	Silent	SNP	T	TCGA-BP-4972-01A-01D-1462-08	5958788	107868987	47401573	44	21789											
LRCH2	57631	broad.mit.edu;hgsc.bcm.edu	37	X	114398272	114398272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	T	114398272	G	T	114398272	3	4	369	1	0	0	0	0	1	0	0	0	8940	971	34	4	911	4	LRCH2	23	114398272	Missense_Mutation	SNP	G	TCGA-BP-4972-01A-01D-1462-08	6529285	114398272	40872288	45	21790											
SLC6A14	11254	hgsc.bcm.edu	37	X	115572174	115572175	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	G	115572175	-	G	115572174	7	5	369	1	0	1	1	0	0	0	0	0	14690	1567	55	0	265	0	SLC6A14	23	115572174	Frame_Shift_Ins	INS	-	TCGA-BP-4972-01A-01D-1462-08	1173902	115572174	39698386	46	21791											
AIFM1	9131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129265759	129265759	+	Silent	SNP	G	G	A	rs146608893		TCGA-BP-4972-01A-01D-1462-08	TCGA-BP-4972-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b2da5d39-33f6-4807-9d1d-92b7cef2a8df	81fc4193-ce13-4390-b0ad-1c40656c0841	A	129265759	G	A	129265759	2	1	369	1	0	0	0	0	0	0	0	1	426	1103	39	1		1	AIFM1	23	129265759	Silent	SNP	G	TCGA-BP-4972-01A-01D-1462-08	13693585	129265759	26004801	47	21792											
CDK11B	984	hgsc.bcm.edu	37	1	1571829	1571829	+	Silent	SNP	A	A	G	rs147836863		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	G	1571829	A	G	1571829	2	3	370	1	0	0	0	0	0	0	0	1	3129	407	15	3		3	CDK11B	1	1571829	Silent	SNP	A	TCGA-BP-4973-01A-01D-1462-08		1571829	247678792	1	21793											
COL8A2	1296	broad.mit.edu;hgsc.bcm.edu	37	1	36564618	36564618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	A	36564618	C	A	36564618	3	1	370	1	0	0	0	0	1	0	0	0	3708	623	22	4	1451	4	COL8A2	1	36564618	Missense_Mutation	SNP	C	TCGA-BP-4973-01A-01D-1462-08	34992789	36564618	212686003	2	21794											
ARHGAP29	9411	broad.mit.edu;ucsc.edu	37	1	94649704	94649707	+	Splice_Site	DEL	TACC	-	-	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	TACC	TACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	-	94649707	-	-	94649704	8	5	370	1	0	1	0	1	0	0	1	0	878	1769	61	0		0	ARHGAP29	1	94649704	Splice_Site	DEL	TACC	TCGA-BP-4973-01A-01D-1462-08	58085086	94649704	154600917	3	21795											
NUP210L	91181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154042867	154042867	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	C	154042867	A	C	154042867	3	2	370	1	0	0	0	0	1	0	0	0	10768	98	4	5	3326	5	NUP210L	1	154042867	Missense_Mutation	SNP	A	TCGA-BP-4973-01A-01D-1462-08	59393163	154042867	95207754	4	21796											
URB2	9816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	229773797	229773797	+	Missense_Mutation	SNP	C	C	T	rs141779194		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	229773797	C	T	229773797	3	4	370	1	0	0	0	0	1	0	0	0	17037	536	19	1	3447	1	URB2	1	229773797	Missense_Mutation	SNP	C	TCGA-BP-4973-01A-01D-1462-08	75730930	229773797	19476824	5	21797											
CNNM3	26505	broad.mit.edu	37	2	97493923	97493923	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	97493923	T	T	97493923	3	4	370	1	0	0	0	0	1	0	0	0	3616	739	26	2	1795	2	CNNM3	2	97493923	Missense_Mutation	SNP	C	TCGA-BP-4973-01A-01D-1462-08		97493923	145705450	6	21798											
VHL	7428	hgsc.bcm.edu	37	3	10183744	10183744	+	Silent	SNP	C	C	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	10183744	C	T	10183744	2	4	370	1	0	0	0	0	0	0	0	1	17174	668	24	2		2	VHL	3	10183744	Silent	SNP	C	TCGA-BP-4973-01A-01D-1462-08		10183744	187838686	7	21799											
CTNNB1	1499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	41275110	41275110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	G	41275110	A	G	41275110	3	3	370	1	0	0	0	0	1	0	0	0	4018	362	13	3	1306	3	CTNNB1	3	41275110	Missense_Mutation	SNP	A	TCGA-BP-4973-01A-01D-1462-08	31091366	41275110	156747320	8	21800											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643770	52643770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	G	52643770	A	G	52643770	3	3	370	1	0	0	0	0	1	0	0	0	11498	101	4	3	2834	3	PBRM1	3	52643770	Missense_Mutation	SNP	A	TCGA-BP-4973-01A-01D-1462-08	11368660	52643770	145378660	9	21801											
NPHP3	27031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	132418875	132418875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	132418875	G	T	132418875	3	4	370	1	0	0	0	0	1	0	0	0	10587	933	33	4	2282	4	NPHP3	3	132418875	Missense_Mutation	SNP	G	TCGA-BP-4973-01A-01D-1462-08	79775105	132418875	65603555	10	21802											
RBPJ	3516	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	26426100	26426100	+	Silent	SNP	C	C	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	26426100	C	T	26426100	2	4	370	1	0	0	0	0	0	0	0	1	13174	927	32	2		2	RBPJ	4	26426100	Silent	SNP	C	TCGA-BP-4973-01A-01D-1462-08		26426100	164728176	11	21803											
GPR98	84059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	89979836	89979836	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	C	89979836	G	C	89979836	3	2	370	1	0	0	0	0	1	0	0	0	6728	942	33	4	6208	4	GPR98	5	89979836	Missense_Mutation	SNP	G	TCGA-BP-4973-01A-01D-1462-08		89979836	90935424	12	21804											
PCDHB15	56121	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140625223	140625223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	140625223	C	T	140625223	3	4	370	1	0	0	0	0	1	0	0	0	11547	710	25	2	79	2	PCDHB15	5	140625223	Missense_Mutation	SNP	C	TCGA-BP-4973-01A-01D-1462-08	50645387	140625223	40290037	13	21805											
ATP10B	23120	broad.mit.edu;ucsc.edu	37	5	160061395	160061395	+	Silent	SNP	G	A	A	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	A	160061395	A	A	160061395	2	1	370	1	0	0	0	0	0	0	0	1	1117	1335	47	2		2	ATP10B	5	160061395	Silent	SNP	G	TCGA-BP-4973-01A-01D-1462-08	19436172	160061395	20853865	14	21806											
SLIT3	6586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	168098202	168098202	+	Splice_Site	SNP	C	C	G	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	G	168098202	C	G	168098202	5	3	370	1	0	0	0	0	0	0	1	0	14754	521	18	4	455	4	SLIT3	5	168098202	Splice_Site	SNP	C	TCGA-BP-4973-01A-01D-1462-08	8036807	168098202	12817058	15	21807											
DOCK2	1794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	169477270	169477270	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	A	169477270	T	A	169477270	3	1	370	1	0	0	0	0	1	0	0	0	4689	1783	62	5	4244	5	DOCK2	5	169477270	Missense_Mutation	SNP	T	TCGA-BP-4973-01A-01D-1462-08	1379068	169477270	11437990	16	21808											
NEDD9	4739	hgsc.bcm.edu;ucsc.edu	37	6	11185683	11185684	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	G	11185684	-	G	11185683	7	5	370	1	0	1	1	0	0	0	0	0	10320	755	27	0	291	0	NEDD9	6	11185683	Frame_Shift_Ins	INS	-	TCGA-BP-4973-01A-01D-1462-08		11185683	159929384	17	21809											
HSP90AB1	3326	hgsc.bcm.edu;ucsc.edu	37	6	44219502	44219503	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	C	44219503	-	C	44219502	7	5	370	1	0	1	1	0	0	0	0	0	7409	1087	38	0	1373	0	HSP90AB1	6	44219502	Frame_Shift_Ins	INS	-	TCGA-BP-4973-01A-01D-1462-08	33033819	44219502	126895565	18	21810											
TINAG	27283	hgsc.bcm.edu;ucsc.edu	37	6	54173613	54173614	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	-	54173614	AG	-	54173613	7	5	370	1	0	1	0	1	0	0	0	0	15933	180	7	0	267	0	TINAG	6	54173613	Frame_Shift_Del	DEL	AG	TCGA-BP-4973-01A-01D-1462-08	9954111	54173613	116941454	19	21811											
FLNC	2318	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	128484237	128484237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	G	128484237	A	G	128484237	3	3	370	1	0	0	0	0	1	0	0	0	5942	131	5	3	3187	3	FLNC	7	128484237	Missense_Mutation	SNP	A	TCGA-BP-4973-01A-01D-1462-08		128484237	30654426	20	21812											
PABPC1	26986	hgsc.bcm.edu	37	8	101725327	101725327	+	Silent	SNP	T	T	C	rs62513927		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	C	101725327	T	C	101725327	2	2	370	1	0	0	0	0	0	0	0	1	11370	1606	56	3		3	PABPC1	8	101725327	Silent	SNP	T	TCGA-BP-4973-01A-01D-1462-08		101725327	44638695	21	21813											
TNC	3371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	117825304	117825304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	A	117825304	G	A	117825304	3	1	370	1	0	0	0	0	1	0	0	0	16282	1087	38	1	2744	1	TNC	9	117825304	Missense_Mutation	SNP	G	TCGA-BP-4973-01A-01D-1462-08		117825304	23388127	22	21814											
PNLIP	5406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	118321017	118321017	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	A	118321017	T	A	118321017	3	1	370	1	0	0	0	0	1	0	0	0	12156	1461	51	5	1245	5	PNLIP	10	118321017	Missense_Mutation	SNP	T	TCGA-BP-4973-01A-01D-1462-08		118321017	17213730	23	21815											
PTPRJ	5795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	48166268	48166268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	48166268	G	T	48166268	3	4	370	1	0	0	0	0	1	0	0	0	12817	1174	41	4	2676	4	PTPRJ	11	48166268	Missense_Mutation	SNP	G	TCGA-BP-4973-01A-01D-1462-08		48166268	86840248	24	21816											
HNRNPUL2	221092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62489317	62489317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	62489317	G	T	62489317	3	4	370	1	0	0	0	0	1	0	0	0	7282	971	34	4	814	4	HNRNPUL2	11	62489317	Missense_Mutation	SNP	G	TCGA-BP-4973-01A-01D-1462-08	14323049	62489317	72517199	25	21817											
NBEA	26960	broad.mit.edu;hgsc.bcm.edu	37	13	36220480	36220480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	36220480	C	T	36220480	3	4	370	1	0	0	0	0	1	0	0	0	10194	710	25	2	7900	2	NBEA	13	36220480	Missense_Mutation	SNP	C	TCGA-BP-4973-01A-01D-1462-08		36220480	78949398	26	21818											
CYFIP1	23191	hgsc.bcm.edu;ucsc.edu	37	15	22928433	22928434	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	-	22928434	AG	-	22928433	7	5	370	1	0	1	0	1	0	0	0	0	4139	180	7	0	324	0	CYFIP1	15	22928433	Frame_Shift_Del	DEL	AG	TCGA-BP-4973-01A-01D-1462-08		22928433	79602959	27	21819											
SEMA6D	80031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	48053615	48053615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	48053615	G	T	48053615	3	4	370	1	0	0	0	0	1	0	0	0	14055	1377	48	4	452	4	SEMA6D	15	48053615	Missense_Mutation	SNP	G	TCGA-BP-4973-01A-01D-1462-08	25125182	48053615	54477777	28	21820											
KIAA0556	23247	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	27715251	27715251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	T	27715251	G	T	27715251	3	4	370	1	0	0	0	0	1	0	0	0	8190	1145	40	4	1367	4	KIAA0556	16	27715251	Missense_Mutation	SNP	G	TCGA-BP-4973-01A-01D-1462-08		27715251	62639502	29	21821											
ATMIN	23300	hgsc.bcm.edu	37	16	81077767	81077774	+	Frame_Shift_Del	DEL	TAAATCAA	TAAATCAA	-	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	TAAATCAA	TAAATCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	-	81077774	TAAATCAA	-	81077767	7	5	370	1	0	1	0	1	0	0	0	0	1110	1764	61	0	1678	0	ATMIN	16	81077767	Frame_Shift_Del	DEL	TAAATCAA	TCGA-BP-4973-01A-01D-1462-08	53362516	81077767	9276986	30	21822											
KEAP1	9817	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10610395	10610395	+	Silent	SNP	A	A	G	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	G	10610395	A	G	10610395	2	3	370	1	0	0	0	0	0	0	0	1	8148	175	7	3		3	KEAP1	19	10610395	Silent	SNP	A	TCGA-BP-4973-01A-01D-1462-08		10610395	48518588	31	21823											
ZNF223	7766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44570596	44570596	+	Silent	SNP	G	G	A	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	A	44570596	G	A	44570596	2	1	370	1	0	0	0	0	0	0	0	1	17789	1020	36	2		2	ZNF223	19	44570596	Silent	SNP	G	TCGA-BP-4973-01A-01D-1462-08	33960201	44570596	14558387	32	21824											
HAS1	3036	broad.mit.edu	37	19	52216712	52216712	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	A	52216712	A	A	52216712	3	1	370	1	0	0	0	0	1	0	0	0	6968	1086	38	1	35	1	HAS1	19	52216712	Missense_Mutation	SNP	G	TCGA-BP-4973-01A-01D-1462-08	7646116	52216712	6912271	33	21825											
PLXNB2	23654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50717397	50717397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	A	50717397	G	A	50717397	3	1	370	1	0	0	0	0	1	0	0	0	12131	1116	39	1	1123	1	PLXNB2	22	50717397	Missense_Mutation	SNP	G	TCGA-BP-4973-01A-01D-1462-08		50717397	587169	34	21826											
BCORL1	63035	hgsc.bcm.edu	37	X	129189951	129189952	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4973-01A-01D-1462-08	TCGA-BP-4973-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5db95dcc-97e3-42a5-87dd-75a09b9c164a	64a62b71-e48d-4e06-ab02-23f2b8a6c567	G	129189952	-	G	129189951	7	5	370	1	0	1	1	0	0	0	0	0	1387	188	7	0	5248	0	BCORL1	23	129189951	Frame_Shift_Ins	INS	-	TCGA-BP-4973-01A-01D-1462-08		129189951	26080609	35	21827											
VHL	7428	hgsc.bcm.edu	37	3	10183776	10183776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4974-01A-01D-1392-10	TCGA-BP-4974-11A-01D-1392-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	d82f43d1-a746-4ee6-a58b-3f0966072ae7	629d67a8-8738-427e-8276-926929e06641	C	10183776	G	C	10183776	3	2	371	1	0	0	0	0	1	0	0	0	17174	1087	38	4	247	4	VHL	3	10183776	Missense_Mutation	SNP	G	TCGA-BP-4974-01A-01D-1392-10		10183776	187838654	1	21828											
FAM76A	199870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	28060630	28060630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	T	28060630	C	T	28060630	3	4	372	1	0	0	0	0	1	0	0	0	5631	594	21	2	410	2	FAM76A	1	28060630	Missense_Mutation	SNP	C	TCGA-BP-4974-01A-01D-1462-08		28060630	221189991	1	21829											
METTL13	51603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	171753287	171753287	+	Silent	SNP	C	C	T	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	T	171753287	C	T	171753287	2	4	372	1	0	0	0	0	0	0	0	1	9504	581	21	2		2	METTL13	1	171753287	Silent	SNP	C	TCGA-BP-4974-01A-01D-1462-08	143692657	171753287	77497334	2	21830											
METTL13	51603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	171756896	171756896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	A	171756896	G	A	171756896	3	1	372	1	0	0	0	0	1	0	0	0	9504	1348	47	2	1149	2	METTL13	1	171756896	Missense_Mutation	SNP	G	TCGA-BP-4974-01A-01D-1462-08	3609	171756896	77493725	3	21831											
MARK1	4139	broad.mit.edu;hgsc.bcm.edu	37	1	220835248	220835248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	G	220835248	A	G	220835248	3	3	372	1	0	0	0	0	1	0	0	0	9319	420	15	3	2198	3	MARK1	1	220835248	Missense_Mutation	SNP	A	TCGA-BP-4974-01A-01D-1462-08	49078352	220835248	28415373	4	21832											
HEATR1	55127	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	236766491	236766491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	T	236766491	C	T	236766491	3	4	372	1	0	0	0	0	1	0	0	0	7034	797	28	2	6278	2	HEATR1	1	236766491	Missense_Mutation	SNP	C	TCGA-BP-4974-01A-01D-1462-08	15931243	236766491	12484130	5	21833											
REG3G	130120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	79255044	79255044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	A	79255044	C	A	79255044	3	1	372	1	0	0	0	0	1	0	0	0	13226	680	24	4	459	4	REG3G	2	79255044	Missense_Mutation	SNP	C	TCGA-BP-4974-01A-01D-1462-08		79255044	163944329	6	21834											
SLC11A1	6556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219254723	219254723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	A	219254723	C	A	219254723	3	1	372	1	0	0	0	0	1	0	0	0	14393	739	26	4	960	4	SLC11A1	2	219254723	Missense_Mutation	SNP	C	TCGA-BP-4974-01A-01D-1462-08	139999679	219254723	23944650	7	21835											
CRELD1	78987	broad.mit.edu;hgsc.bcm.edu	37	3	9982650	9982650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	A	9982650	G	A	9982650	3	1	372	1	0	0	0	0	1	0	0	0	3868	1348	47	2	595	2	CRELD1	3	9982650	Missense_Mutation	SNP	G	TCGA-BP-4974-01A-01D-1462-08		9982650	188039780	8	21836											
ACAP2	23527	hgsc.bcm.edu;ucsc.edu	37	3	195016613	195016613	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	G	195016613	T	G	195016613	3	3	372	1	0	0	0	0	1	0	0	0	119	1609	56	5	868	5	ACAP2	3	195016613	Missense_Mutation	SNP	T	TCGA-BP-4974-01A-01D-1462-08	185033963	195016613	3005817	9	21837											
KLHL8	57563	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	88106697	88106697	+	Silent	SNP	A	A	G	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	G	88106697	A	G	88106697	2	3	372	1	0	0	0	0	0	0	0	1	8402	157	6	3		3	KLHL8	4	88106697	Silent	SNP	A	TCGA-BP-4974-01A-01D-1462-08		88106697	103047579	10	21838											
UCP1	7350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	141484270	141484270	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	T	141484270	A	T	141484270	3	4	372	1	0	0	0	0	1	0	0	0	16942	98	4	5	311	5	UCP1	4	141484270	Missense_Mutation	SNP	A	TCGA-BP-4974-01A-01D-1462-08	53377573	141484270	49670006	11	21839											
LMAN2	10960	broad.mit.edu	37	5	176778599	176778599	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	G	176778599	G	G	176778599	3	3	372	1	0	0	0	0	1	0	0	0	8845	188	7	3	1052	3	LMAN2	5	176778599	Missense_Mutation	SNP	A	TCGA-BP-4974-01A-01D-1462-08		176778599	4136661	12	21840											
GABRR1	2569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	89891701	89891701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	T	89891701	G	T	89891701	3	4	372	1	0	0	0	0	1	0	0	0	6183	1232	43	4	579	4	GABRR1	6	89891701	Missense_Mutation	SNP	G	TCGA-BP-4974-01A-01D-1462-08		89891701	81223366	13	21841											
MAP3K5	4217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	136972151	136972151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	C	136972151	A	C	136972151	3	2	372	1	0	0	0	0	1	0	0	0	9260	304	11	5	2445	5	MAP3K5	6	136972151	Missense_Mutation	SNP	A	TCGA-BP-4974-01A-01D-1462-08	47080450	136972151	34142916	14	21842											
PRKDC	5591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	48767813	48767813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	T	48767813	C	T	48767813	3	4	372	1	0	0	0	0	1	0	0	0	12531	710	25	2	5803	2	PRKDC	8	48767813	Missense_Mutation	SNP	C	TCGA-BP-4974-01A-01D-1462-08		48767813	97596209	15	21843											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110412378	110412378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	A	110412378	T	A	110412378	3	1	372	1	0	0	0	0	1	0	0	0	11979	1461	51	5	1136	5	PKHD1L1	8	110412378	Missense_Mutation	SNP	T	TCGA-BP-4974-01A-01D-1462-08	61644565	110412378	35951644	16	21844											
YEATS4	8089	broad.mit.edu	37	12	69756582	69756582	+	Silent	SNP	T	G	G	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	G	69756582	G	G	69756582	2	3	372	1	0	0	0	0	0	0	0	1	17485	1741	61	5		5	YEATS4	12	69756582	Silent	SNP	T	TCGA-BP-4974-01A-01D-1462-08		69756582	64095313	17	21845											
ANKS1B	56899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	99194855	99194855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	T	99194855	C	T	99194855	3	4	372	1	0	0	0	0	1	0	0	0	689	797	28	2	774	2	ANKS1B	12	99194855	Missense_Mutation	SNP	C	TCGA-BP-4974-01A-01D-1462-08	29438273	99194855	34657040	18	21846											
RYR3	6263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	33873752	33873752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	C	33873752	T	C	33873752	3	2	372	1	0	0	0	0	1	0	0	0	13783	1667	58	3	1535	3	RYR3	15	33873752	Missense_Mutation	SNP	T	TCGA-BP-4974-01A-01D-1462-08		33873752	68657640	19	21847											
DHX33	56919	broad.mit.edu	37	17	5372140	5372140	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	A	5372140	A	A	5372140	3	1	372	1	0	0	0	0	1	0	0	0	4508	1115	39	1	2131	1	DHX33	17	5372140	Missense_Mutation	SNP	G	TCGA-BP-4974-01A-01D-1462-08		5372140	75823070	20	21848											
FAM83G	644815	hgsc.bcm.edu	37	17	18874924	18874925	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	C	18874925	-	C	18874924	7	5	372	1	0	1	1	0	0	0	0	0	5646	1190	42	0	255	0	FAM83G	17	18874924	Frame_Shift_Ins	INS	-	TCGA-BP-4974-01A-01D-1462-08	13502784	18874924	62320286	21	21849											
MED1	5469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37565879	37565879	+	Silent	SNP	G	G	A	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	A	37565879	G	A	37565879	2	1	372	1	0	0	0	0	0	0	0	1	9432	1281	45	2		2	MED1	17	37565879	Silent	SNP	G	TCGA-BP-4974-01A-01D-1462-08	18690955	37565879	43629331	22	21850											
ZNF320	162967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53385021	53385021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	C	53385021	T	C	53385021	3	2	372	1	0	0	0	0	1	0	0	0	17851	1667	58	3	1175	3	ZNF320	19	53385021	Missense_Mutation	SNP	T	TCGA-BP-4974-01A-01D-1462-08		53385021	5743962	23	21851	265	2									
ZNF320	162967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53385022	53385022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	A	53385022	C	A	53385022	3	1	372	1	0	0	0	0	1	0	0	0	17851	825	29	4	1176	4	ZNF320	19	53385022	Missense_Mutation	SNP	C	TCGA-BP-4974-01A-01D-1462-08	1	53385022	5743961	24	21852	265	2									
RFPL1	5988	hgsc.bcm.edu	37	22	29834853	29834853	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	-	29834853	C	-	29834853	7	5	372	1	0	1	0	1	0	0	0	0	13266	855	30	0	75	0	RFPL1	22	29834853	Frame_Shift_Del	DEL	C	TCGA-BP-4974-01A-01D-1462-08		29834853	21469713	25	21853											
POLA1	5422	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	24735484	24735484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	A	24735484	G	A	24735484	3	1	372	1	0	0	0	0	1	0	0	0	12194	1291	45	2	800	2	POLA1	23	24735484	Missense_Mutation	SNP	G	TCGA-BP-4974-01A-01D-1462-08		24735484	130535076	26	21854											
SHROOM4	57477	hgsc.bcm.edu	37	X	50350758	50350758	+	Silent	SNP	C	C	T	novel		TCGA-BP-4974-01A-01D-1462-08	TCGA-BP-4974-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3e787cd9-fd58-4818-b68f-19ce1550c566	6bc3f689-898a-431d-b2ca-9661ecf14ac2	T	50350758	C	T	50350758	2	4	372	1	0	0	0	0	0	0	0	1	14309	912	32	2		2	SHROOM4	23	50350758	Silent	SNP	C	TCGA-BP-4974-01A-01D-1462-08	25615274	50350758	104919802	27	21855											
MACF1	23499	hgsc.bcm.edu;ucsc.edu	37	1	39781186	39781194	+	In_Frame_Del	DEL	ACACCCAGG	ACACCCAGG	-	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	ACACCCAGG	ACACCCAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	-	39781194	ACACCCAGG	-	39781186	7	5	373	1	0	1	0	1	0	0	0	0	9151	173	6	0	3389	0	MACF1	1	39781186	In_Frame_Del	DEL	ACACCCAGG	TCGA-BP-4975-01A-01D-1462-08		39781186	209469435	1	21856											
CHIA	27159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111860638	111860638	+	Silent	SNP	C	C	T	rs148384495	byfrequency	TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	T	111860638	C	T	111860638	2	4	373	1	0	0	0	0	0	0	0	1	3344	547	19	1		1	CHIA	1	111860638	Silent	SNP	C	TCGA-BP-4975-01A-01D-1462-08	72079452	111860638	137389983	2	21857											
KCNJ10	3766	broad.mit.edu	37	1	160011200	160011200	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	A	160011200	A	A	160011200	3	1	373	1	0	0	0	0	1	0	0	0	8051	1087	38	1	20	1	KCNJ10	1	160011200	Missense_Mutation	SNP	G	TCGA-BP-4975-01A-01D-1462-08	48150562	160011200	89239421	3	21858											
TEKT4	150483	hgsc.bcm.edu	37	2	95539855	95539855	+	Splice_Site	SNP	T	T	G	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	G	95539855	T	G	95539855	5	3	373	1	0	0	0	0	0	0	1	0	15767	1710	59	5	725	5	TEKT4	2	95539855	Splice_Site	SNP	T	TCGA-BP-4975-01A-01D-1462-08		95539855	147659518	4	21859											
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238249678	238249678	+	Silent	SNP	A	A	C	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	C	238249678	A	C	238249678	2	2	373	1	0	0	0	0	0	0	0	1	3703	175	7	5		5	COL6A3	2	238249678	Silent	SNP	A	TCGA-BP-4975-01A-01D-1462-08	142709823	238249678	4949695	5	21860											
VHL	7428	broad.mit.edu	37	3	10183752	10183752	+	Missense_Mutation	SNP	T	A	A	rs5030803	alternate_allele	TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	A	10183752	A	A	10183752	3	1	373	1	0	0	0	0	1	0	0	0	17174	1667	58	5	223	5	VHL	3	10183752	Missense_Mutation	SNP	T	TCGA-BP-4975-01A-01D-1462-08		10183752	187838678	6	21861											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52621433	52621434	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	-	52621434	CT	-	52621433	7	5	373	1	0	1	0	1	0	0	0	0	11498	565	20	0	1889	0	PBRM1	3	52621433	Frame_Shift_Del	DEL	CT	TCGA-BP-4975-01A-01D-1462-08	42437681	52621433	145400997	7	21862											
ZFYVE28	57732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	2306052	2306052	+	Missense_Mutation	SNP	G	G	A	rs117669252	bycluster;byfrequency;by1000genomes	TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	A	2306052	G	A	2306052	3	1	373	1	0	0	0	0	1	0	0	0	17682	1059	37	1	672	1	ZFYVE28	4	2306052	Missense_Mutation	SNP	G	TCGA-BP-4975-01A-01D-1462-08		2306052	188848224	8	21863											
GPR98	84059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	90025457	90025457	+	Splice_Site	SNP	A	A	C	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	C	90025457	A	C	90025457	5	2	373	1	0	0	0	0	0	0	1	0	6728	202	7	5	10623	5	GPR98	5	90025457	Splice_Site	SNP	A	TCGA-BP-4975-01A-01D-1462-08		90025457	90889803	9	21864											
KIF13A	63971	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	17828563	17828563	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	C	17828563	G	C	17828563	3	2	373	1	0	0	0	0	1	0	0	0	8281	1164	41	4	4106	4	KIF13A	6	17828563	Missense_Mutation	SNP	G	TCGA-BP-4975-01A-01D-1462-08		17828563	153286504	10	21865											
SKIV2L	6499	broad.mit.edu;hgsc.bcm.edu	37	6	31932019	31932019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	C	31932019	T	C	31932019	3	2	373	1	0	0	0	0	1	0	0	0	14372	1464	51	3	1937	3	SKIV2L	6	31932019	Missense_Mutation	SNP	T	TCGA-BP-4975-01A-01D-1462-08	14103456	31932019	139183048	11	21866											
NOX3	50508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	155776182	155776182	+	Nonsense_Mutation	SNP	G	G	A	rs143358981	byfrequency	TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	A	155776182	G	A	155776182	4	1	373	1	0	0	0	0	0	1	0	0	10564	1153	40	1	1624	1	NOX3	6	155776182	Nonsense_Mutation	SNP	G	TCGA-BP-4975-01A-01D-1462-08	123844163	155776182	15338885	12	21867											
C7orf27	0	broad.mit.edu	37	7	2577862	2577862	+	Silent	SNP	A	G	G	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	G	2577862	G	G	2577862	2	3	373	1	0	0	0	0	0	0	0	1	2384	175	7	3		3	C7orf27	7	2577862	Silent	SNP	A	TCGA-BP-4975-01A-01D-1462-08		2577862	156560801	13	21868											
ODF2	4957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131256884	131256884	+	Silent	SNP	A	A	G	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	G	131256884	A	G	131256884	2	3	373	1	0	0	0	0	0	0	0	1	10834	40	2	3		3	ODF2	9	131256884	Silent	SNP	A	TCGA-BP-4975-01A-01D-1462-08		131256884	9956547	14	21869											
CKAP5	9793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	46782199	46782199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	A	46782199	G	A	46782199	3	1	373	1	0	0	0	0	1	0	0	0	3447	1145	40	1	1789	1	CKAP5	11	46782199	Missense_Mutation	SNP	G	TCGA-BP-4975-01A-01D-1462-08		46782199	88224317	15	21870											
P2RX3	5024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57118271	57118271	+	Silent	SNP	C	C	T	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	T	57118271	C	T	57118271	2	4	373	1	0	0	0	0	0	0	0	1	11348	776	27	1		1	P2RX3	11	57118271	Silent	SNP	C	TCGA-BP-4975-01A-01D-1462-08	10336072	57118271	77888245	16	21871											
DDI1	414301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	103908554	103908554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	C	103908554	T	C	103908554	3	2	373	1	0	0	0	0	1	0	0	0	4330	1551	54	3	1006	3	DDI1	11	103908554	Missense_Mutation	SNP	T	TCGA-BP-4975-01A-01D-1462-08	46790283	103908554	31097962	17	21872											
VWA5A	4013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123995002	123995002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	A	123995002	G	A	123995002	3	1	373	1	0	0	0	0	1	0	0	0	17254	1000	35	2	1257	2	VWA5A	11	123995002	Missense_Mutation	SNP	G	TCGA-BP-4975-01A-01D-1462-08	20086448	123995002	11011514	18	21873											
H2AFJ	55766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14927791	14927791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	T	14927791	A	T	14927791	3	4	373	1	0	0	0	0	1	0	0	0	6933	98	4	5	389	5	H2AFJ	12	14927791	Missense_Mutation	SNP	A	TCGA-BP-4975-01A-01D-1462-08		14927791	118924104	19	21874											
C13orf18	0	broad.mit.edu;hgsc.bcm.edu	37	13	46935677	46935677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	G	46935677	C	G	46935677	3	3	373	1	0	0	0	0	1	0	0	0	1722	922	32	4	1002	4	C13orf18	13	46935677	Missense_Mutation	SNP	C	TCGA-BP-4975-01A-01D-1462-08		46935677	68234201	20	21875											
PCSK6	5046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	101933619	101933619	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	-	101933619	C	-	101933619	7	5	373	1	0	1	0	1	0	0	0	0	11611	739	26	0	2441	0	PCSK6	15	101933619	Frame_Shift_Del	DEL	C	TCGA-BP-4975-01A-01D-1462-08		101933619	597773	21	21876											
HAGH	3029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1866933	1866933	+	Silent	SNP	G	G	A	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	A	1866933	G	A	1866933	2	1	373	1	0	0	0	0	0	0	0	1	6952	1103	39	1		1	HAGH	16	1866933	Silent	SNP	G	TCGA-BP-4975-01A-01D-1462-08		1866933	88487820	22	21877											
PLEKHG4	25894	broad.mit.edu;hgsc.bcm.edu	37	16	67318759	67318759	+	Silent	SNP	G	G	A	novel		TCGA-BP-4975-01A-01D-1462-08	TCGA-BP-4975-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	109d2752-17f8-4b00-a61f-dfd8e2e3ca81	412ed2d9-14aa-4f99-8fb3-91713e0e43c9	A	67318759	G	A	67318759	2	1	373	1	0	0	0	0	0	0	0	1	12078	1335	47	2		2	PLEKHG4	16	67318759	Silent	SNP	G	TCGA-BP-4975-01A-01D-1462-08	65451826	67318759	23035994	23	21878											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19488213	19488213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	19488213	C	T	19488213	3	4	374	1	0	0	0	0	1	0	0	0	16916	478	17	2	10786	2	UBR4	1	19488213	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08		19488213	229762408	1	21879											
ZBTB40	9923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22828055	22828055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	22828055	A	G	22828055	3	3	374	1	0	0	0	0	1	0	0	0	17554	304	11	3	912	3	ZBTB40	1	22828055	Missense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08	3339842	22828055	226422566	2	21880											
SLC25A24	29957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	108700179	108700179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	108700179	C	T	108700179	3	4	374	1	0	0	0	0	1	0	0	0	14500	661	23	1	883	1	SLC25A24	1	108700179	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	85872124	108700179	140550442	3	21881											
SYPL2	284612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110020593	110020593	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	110020593	G	C	110020593	3	2	374	1	0	0	0	0	1	0	0	0	15475	1116	39	4	628	4	SYPL2	1	110020593	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	1320414	110020593	139230028	4	21882											
ABL2	27	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	179090792	179090792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	179090792	C	T	179090792	3	4	374	1	0	0	0	0	1	0	0	0	93	603	21	2	2727	2	ABL2	1	179090792	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	69070199	179090792	70159829	5	21883											
SLC45A3	85414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205632093	205632093	+	Missense_Mutation	SNP	C	C	T	rs138897809		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	205632093	C	T	205632093	3	4	374	1	0	0	0	0	1	0	0	0	14655	536	19	1	847	1	SLC45A3	1	205632093	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	26541301	205632093	43618528	6	21884											
TAF5L	27097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	229738593	229738593	+	Silent	SNP	C	C	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	229738593	C	A	229738593	2	1	374	1	0	0	0	0	0	0	0	1	15541	581	21	4		4	TAF5L	1	229738593	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08	24106500	229738593	19512028	7	21885											
LYST	1130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	235944201	235944201	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	235944201	A	-	235944201	7	5	374	1	0	1	0	1	0	0	0	0	9135	359	13	0	6379	0	LYST	1	235944201	Frame_Shift_Del	DEL	A	TCGA-BP-4976-01A-01D-1462-08	6205608	235944201	13306420	8	21886											
KCNS3	3790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	18113665	18113665	+	Missense_Mutation	SNP	G	G	A	rs150320186		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	18113665	G	A	18113665	3	1	374	1	0	0	0	0	1	0	0	0	8097	1058	37	1	1392	1	KCNS3	2	18113665	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08		18113665	225085708	9	21887											
KLRAQ1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	48687267	48687267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	48687267	G	T	48687267	4	4	374	1	0	0	0	0	0	1	0	0	8420	1175	41	4	596	4	KLRAQ1	2	48687267	Nonsense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	30573602	48687267	194512106	10	21888											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141032077	141032077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	141032077	C	A	141032077	3	1	374	1	0	0	0	0	1	0	0	0	8962	855	30	4	769	4	LRP1B	2	141032077	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	92344810	141032077	102167296	11	21889											
UBR3	130507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170863656	170863656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	170863656	A	G	170863656	3	3	374	1	0	0	0	0	1	0	0	0	16915	217	8	3	4296	3	UBR3	2	170863656	Missense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08	29831579	170863656	72335717	12	21890											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179437362	179437362	+	Silent	SNP	T	T	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	179437362	T	A	179437362	2	1	374	1	0	0	0	0	0	0	0	1	16747	1741	61	5		5	TTN	2	179437362	Silent	SNP	T	TCGA-BP-4976-01A-01D-1462-08	8573706	179437362	63762011	13	21891											
RUFY4	285180	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	218954028	218954028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	218954028	A	C	218954028	3	2	374	1	0	0	0	0	1	0	0	0	13754	304	11	5	1594	5	RUFY4	2	218954028	Missense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08	39516666	218954028	24245345	14	21892											
DOCK10	55619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	225721605	225721605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	225721605	G	C	225721605	3	2	374	1	0	0	0	0	1	0	0	0	4687	991	35	4	4948	4	DOCK10	2	225721605	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	6767577	225721605	17477768	15	21893											
BRPF1	7862	broad.mit.edu;hgsc.bcm.edu	37	3	9785380	9785380	+	Silent	SNP	C	C	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	9785380	C	G	9785380	2	3	374	1	0	0	0	0	0	0	0	1	1522	726	26	4		4	BRPF1	3	9785380	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08		9785380	188237050	16	21894											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188299	10188306	+	Frame_Shift_Del	DEL	TTTGCCAA	TTTGCCAA	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	TTTGCCAA	TTTGCCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	10188306	TTTGCCAA	-	10188299	7	5	374	1	0	1	0	1	0	0	0	0	17174	1841	64	0	448	0	VHL	3	10188299	Frame_Shift_Del	DEL	TTTGCCAA	TCGA-BP-4976-01A-01D-1462-08	402919	10188299	187834131	17	21895											
VIPR1	7433	broad.mit.edu;hgsc.bcm.edu	37	3	42568970	42568970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	42568970	C	T	42568970	3	4	374	1	0	0	0	0	1	0	0	0	17181	797	28	2	503	2	VIPR1	3	42568970	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	32380671	42568970	155453460	18	21896											
NBEAL2	23218	broad.mit.edu	37	3	47038048	47038048	+	Silent	SNP	G	A	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	47038048	A	A	47038048	2	1	374	1	0	0	0	0	0	0	0	1	10196	1306	46	2		2	NBEAL2	3	47038048	Silent	SNP	G	TCGA-BP-4976-01A-01D-1462-08	4469078	47038048	150984382	19	21897											
MUC4	4585	hgsc.bcm.edu	37	3	195505746	195505746	+	Silent	SNP	T	T	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	195505746	T	G	195505746	2	3	374	1	0	0	0	0	0	0	0	1	9985	1567	55	5		5	MUC4	3	195505746	Silent	SNP	T	TCGA-BP-4976-01A-01D-1462-08	148467698	195505746	2516684	20	21898											
POLR2B	5431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	57876947	57876947	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	57876947	T	G	57876947	3	3	374	1	0	0	0	0	1	0	0	0	12222	1606	56	5	1628	5	POLR2B	4	57876947	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08		57876947	133277329	21	21899											
AIMP1	9255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	107252948	107252948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	107252948	G	A	107252948	3	1	374	1	0	0	0	0	1	0	0	0	433	1319	46	2	601	2	AIMP1	4	107252948	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	49376001	107252948	83901328	22	21900											
ZFR	51663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32403288	32403288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	32403288	G	A	32403288	3	1	374	1	0	0	0	0	1	0	0	0	17671	1377	48	2	1837	2	ZFR	5	32403288	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08		32403288	148511972	23	21901											
PRLR	5618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	35065723	35065723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	35065723	G	A	35065723	3	1	374	1	0	0	0	0	1	0	0	0	12541	1319	46	2	535	2	PRLR	5	35065723	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	2662435	35065723	145849537	24	21902											
TGFBI	7045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	135385220	135385220	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	135385220	C	G	135385220	3	3	374	1	0	0	0	0	1	0	0	0	15832	845	30	4	890	4	TGFBI	5	135385220	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	100319497	135385220	45530040	25	21903											
DOCK2	1794	broad.mit.edu;ucsc.edu	37	5	169494675	169494675	+	Silent	SNP	C	T	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	169494675	T	T	169494675	2	4	374	1	0	0	0	0	0	0	0	1	4689	883	31	1		1	DOCK2	5	169494675	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08	34109455	169494675	11420585	26	21904											
GRK6	2870	broad.mit.edu	37	5	176863393	176863393	+	Splice_Site	SNP	G	T	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	176863393	T	T	176863393	5	4	374	1	0	0	0	0	0	0	1	0	6800	985	34	4	1316	4	GRK6	5	176863393	Splice_Site	SNP	G	TCGA-BP-4976-01A-01D-1462-08	7368718	176863393	4051867	27	21905											
PRPF4B	8899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	4032532	4032532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	4032532	G	T	4032532	3	4	374	1	0	0	0	0	1	0	0	0	12583	1290	45	4	787	4	PRPF4B	6	4032532	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08		4032532	167082535	28	21906											
BAT1	0	hgsc.bcm.edu	37	6	31504362	31504363	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	AG	31504363	-	AG	31504362	7	5	374	1	0	1	1	0	0	0	0	0	1318	1509	53	0	783	0	BAT1	6	31504362	Frame_Shift_Ins	INS	-	TCGA-BP-4976-01A-01D-1462-08	27471830	31504362	139610705	29	21907											
SLC26A8	116369	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35987387	35987387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	35987387	T	A	35987387	3	1	374	1	0	0	0	0	1	0	0	0	14536	1551	54	5	2890	5	SLC26A8	6	35987387	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08	4483025	35987387	135127680	30	21908											
CPNE5	57699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36742765	36742765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	36742765	C	A	36742765	3	1	374	1	0	0	0	0	1	0	0	0	3817	913	32	4	1119	4	CPNE5	6	36742765	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	755378	36742765	134372302	31	21909											
MUT	4594	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	49425564	49425564	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	49425564	T	-	49425564	7	5	374	1	0	1	0	1	0	0	0	0	9998	1493	52	0	1703	0	MUT	6	49425564	Frame_Shift_Del	DEL	T	TCGA-BP-4976-01A-01D-1462-08	12682799	49425564	121689503	32	21910											
SNX14	57231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	86256928	86256928	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	86256928	A	-	86256928	7	5	374	1	0	1	0	1	0	0	0	0	14898	131	5	0	1902	0	SNX14	6	86256928	Frame_Shift_Del	DEL	A	TCGA-BP-4976-01A-01D-1462-08	36831364	86256928	84858139	33	21911											
FNDC1	84624	broad.mit.edu	37	6	159659602	159659602	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	159659602	A	A	159659602	3	1	374	1	0	0	0	0	1	0	0	0	5975	1145	40	1	4135	1	FNDC1	6	159659602	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	73402674	159659602	11455465	34	21912											
IGF2R	3482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160461597	160461597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	160461597	G	T	160461597	3	4	374	1	0	0	0	0	1	0	0	0	7583	1058	37	4	1363	4	IGF2R	6	160461597	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	801995	160461597	10653470	35	21913											
C7orf27	0	broad.mit.edu;ucsc.edu	37	7	2577853	2577853	+	Silent	SNP	C	G	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	2577853	G	G	2577853	2	3	374	1	0	0	0	0	0	0	0	1	2384	697	25	4		4	C7orf27	7	2577853	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08		2577853	156560810	36	21914											
SFRP4	6424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	37955990	37955990	+	Silent	SNP	C	C	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	37955990	C	A	37955990	2	1	374	1	0	0	0	0	0	0	0	1	14176	755	27	4		4	SFRP4	7	37955990	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08	35378137	37955990	121182673	37	21915											
SAMD9	54809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92732506	92732506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	92732506	T	G	92732506	3	3	374	1	0	0	0	0	1	0	0	0	13839	1850	64	5	1868	5	SAMD9	7	92732506	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08	54776516	92732506	66406157	38	21916											
IMPDH1	3614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	128049515	128049515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	128049515	T	C	128049515	3	2	374	1	0	0	0	0	1	0	0	0	7733	1696	59	3	1707	3	IMPDH1	7	128049515	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08	35317009	128049515	31089148	39	21917											
PARP12	64761	broad.mit.edu;ucsc.edu	37	7	139754561	139754561	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	139754561	-	-	139754561	7	5	374	1	0	1	0	1	0	0	0	0	11464	1617	56	0	1378	0	PARP12	7	139754561	Frame_Shift_Del	DEL	T	TCGA-BP-4976-01A-01D-1462-08	11705046	139754561	19384102	40	21918											
MLL3	58508	broad.mit.edu	37	7	151962234	151962234	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	151962234	C	C	151962234	3	2	374	1	0	0	0	0	1	0	0	0	9629	14	1	5	13870	5	MLL3	7	151962234	Missense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08	12207673	151962234	7176429	41	21919											
FAM86B1	85002	broad.mit.edu	37	8	12044016	12044016	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	12044016	A	A	12044016	3	1	374	1	0	0	0	0	1	0	0	0	5651	1580	55	5	417	5	FAM86B1	8	12044016	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08		12044016	134320006	42	21920											
DLC1	10395	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	12950255	12950255	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	12950255	C	G	12950255	3	3	374	1	0	0	0	0	1	0	0	0	4552	912	32	4	1004	4	DLC1	8	12950255	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	906239	12950255	133413767	43	21921											
PLEKHA2	59339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38775521	38775521	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	38775521	T	A	38775521	3	1	374	1	0	0	0	0	1	0	0	0	12063	1841	64	5	76	5	PLEKHA2	8	38775521	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08	25825266	38775521	107588501	44	21922											
WWP1	11059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	87464827	87464827	+	Silent	SNP	A	A	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	87464827	A	G	87464827	2	3	374	1	0	0	0	0	0	0	0	1	17427	40	2	3		3	WWP1	8	87464827	Silent	SNP	A	TCGA-BP-4976-01A-01D-1462-08	48689306	87464827	58899195	45	21923											
MED30	90390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	118552190	118552190	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	118552190	A	-	118552190	7	5	374	1	0	1	0	1	0	0	0	0	9455	352	13	0	524	0	MED30	8	118552190	Frame_Shift_Del	DEL	A	TCGA-BP-4976-01A-01D-1462-08	31087363	118552190	27811832	46	21924											
ZNF16	7564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	146156465	146156465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	146156465	G	T	146156465	3	4	374	1	0	0	0	0	1	0	0	0	17750	962	34	4	344	4	ZNF16	8	146156465	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	27604275	146156465	207557	47	21925											
JAK2	3717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	5073717	5073717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	5073717	G	T	5073717	3	4	374	1	0	0	0	0	1	0	0	0	7945	1029	36	4	1842	4	JAK2	9	5073717	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08		5073717	136139714	48	21926											
FBXO18	84893	hgsc.bcm.edu;ucsc.edu	37	10	5967396	5967404	+	In_Frame_Del	DEL	ATTTTGTGA	ATTTTGTGA	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	ATTTTGTGA	ATTTTGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	5967404	ATTTTGTGA	-	5967396	7	5	374	1	0	1	0	1	0	0	0	0	5738	333	12	0	2895	0	FBXO18	10	5967396	In_Frame_Del	DEL	ATTTTGTGA	TCGA-BP-4976-01A-01D-1462-08		5967396	129567351	49	21927											
ITIH2	3698	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	7759749	7759749	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	7759749	G	C	7759749	3	2	374	1	0	0	0	0	1	0	0	0	7911	943	33	4	650	4	ITIH2	10	7759749	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	1792353	7759749	127774998	50	21928											
SEPHS1	22929	broad.mit.edu;hgsc.bcm.edu	37	10	13386847	13386848	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	13386848	-	G	13386847	7	5	374	1	0	1	1	0	0	0	0	0	14067	1812	63	0	1106	0	SEPHS1	10	13386847	Frame_Shift_Ins	INS	-	TCGA-BP-4976-01A-01D-1462-08	5627098	13386847	122147900	51	21929											
FAM21C	253725	broad.mit.edu	37	10	46272804	46272804	+	Silent	SNP	G	A	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	46272804	A	A	46272804	2	1	374	1	0	0	0	0	0	0	0	1	5546	1335	47	2		2	FAM21C	10	46272804	Silent	SNP	G	TCGA-BP-4976-01A-01D-1462-08	32885957	46272804	89261943	52	21930											
SEC24C	9632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75520026	75520026	+	Silent	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	75520026	C	T	75520026	2	4	374	1	0	0	0	0	0	0	0	1	14009	581	21	2		2	SEC24C	10	75520026	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08	29247222	75520026	60014721	53	21931											
ADAM12	8038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	127824195	127824195	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	127824195	T	A	127824195	3	1	374	1	0	0	0	0	1	0	0	0	236	1406	49	5	2530	5	ADAM12	10	127824195	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08	52304169	127824195	7710552	54	21932											
FAM160A2	84067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6233063	6233063	+	Silent	SNP	G	G	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	6233063	G	T	6233063	2	4	374	1	0	0	0	0	0	0	0	1	5473	1161	41	4		4	FAM160A2	11	6233063	Silent	SNP	G	TCGA-BP-4976-01A-01D-1462-08		6233063	128773453	55	21933											
CTNND1	1500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57571149	57571149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	57571149	G	A	57571149	3	1	374	1	0	0	0	0	1	0	0	0	4021	1319	46	2	1499	2	CTNND1	11	57571149	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	51338086	57571149	77435367	56	21934											
SLC15A3	51296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60714170	60714170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	60714170	G	T	60714170	3	4	374	1	0	0	0	0	1	0	0	0	14413	962	34	4	1091	4	SLC15A3	11	60714170	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	3143021	60714170	74292346	57	21935											
ZNHIT2	741	hgsc.bcm.edu;ucsc.edu	37	11	64883959	64883959	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	64883959	G	-	64883959	7	5	374	1	0	1	0	1	0	0	0	0	18219	1103	39	0	48	0	ZNHIT2	11	64883959	Frame_Shift_Del	DEL	G	TCGA-BP-4976-01A-01D-1462-08	4169789	64883959	70122557	58	21936											
MUS81	80198	broad.mit.edu	37	11	65629418	65629418	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	65629418	C	C	65629418	3	2	374	1	0	0	0	0	1	0	0	0	9995	1275	44	4	366	4	MUS81	11	65629418	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	745459	65629418	69377098	59	21937											
GPR152	390212	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	67219269	67219269	+	Silent	SNP	C	C	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	67219269	C	A	67219269	2	1	374	1	0	0	0	0	0	0	0	1	6665	697	25	4		4	GPR152	11	67219269	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08	1589851	67219269	67787247	60	21938											
PPFIA1	8500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	70201888	70201888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	70201888	G	A	70201888	3	1	374	1	0	0	0	0	1	0	0	0	12316	1174	41	2	2525	2	PPFIA1	11	70201888	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	2982619	70201888	64804628	61	21939											
AQP11	282679	broad.mit.edu;hgsc.bcm.edu	37	11	77314713	77314713	+	Silent	SNP	T	T	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	77314713	T	C	77314713	2	2	374	1	0	0	0	0	0	0	0	1	823	1596	56	3		3	AQP11	11	77314713	Silent	SNP	T	TCGA-BP-4976-01A-01D-1462-08	7112825	77314713	57691803	62	21940											
NLRX1	79671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119045325	119045325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	119045325	C	T	119045325	3	4	374	1	0	0	0	0	1	0	0	0	10492	838	29	2	1031	2	NLRX1	11	119045325	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	41730612	119045325	15961191	63	21941											
CHD4	1108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6690827	6690827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	6690827	C	T	6690827	3	4	374	1	0	0	0	0	1	0	0	0	3329	478	17	2	1109	2	CHD4	12	6690827	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08		6690827	127161068	64	21942											
KRT6C	286887	broad.mit.edu	37	12	52864378	52864378	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	52864378	G	G	52864378	3	3	374	1	0	0	0	0	1	0	0	0	8489	855	30	4	596	4	KRT6C	12	52864378	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	46173551	52864378	80987517	65	21943											
NACA	4666	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57112266	57112266	+	Silent	SNP	A	A	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	57112266	A	G	57112266	2	3	374	1	0	0	0	0	0	0	0	1	10140	291	11	3		3	NACA	12	57112266	Silent	SNP	A	TCGA-BP-4976-01A-01D-1462-08	4247888	57112266	76739629	66	21944											
SHMT2	6472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57626066	57626066	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	57626066	T	-	57626066	7	5	374	1	0	1	0	1	0	0	0	0	14299	1413	49	0	603	0	SHMT2	12	57626066	Frame_Shift_Del	DEL	T	TCGA-BP-4976-01A-01D-1462-08	513800	57626066	76225829	67	21945											
HELB	92797	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	66731858	66731858	+	Silent	SNP	G	G	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	66731858	G	A	66731858	2	1	374	1	0	0	0	0	0	0	0	1	7052	962	34	2		2	HELB	12	66731858	Silent	SNP	G	TCGA-BP-4976-01A-01D-1462-08	9105792	66731858	67120037	68	21946											
MTERFD3	80298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	107371722	107371722	+	Silent	SNP	T	T	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	107371722	T	C	107371722	2	2	374	1	0	0	0	0	0	0	0	1	9928	1722	60	3		3	MTERFD3	12	107371722	Silent	SNP	T	TCGA-BP-4976-01A-01D-1462-08	40639864	107371722	26480173	69	21947											
SSH1	54434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	109186220	109186220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	109186220	C	T	109186220	3	4	374	1	0	0	0	0	1	0	0	0	15196	681	24	2	1608	2	SSH1	12	109186220	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	1814498	109186220	24665675	70	21948											
ANAPC7	51434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	110815266	110815266	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	110815266	A	T	110815266	4	4	374	1	0	0	0	0	0	1	0	0	606	372	13	5	424	5	ANAPC7	12	110815266	Nonsense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08	1629046	110815266	23036629	71	21949											
ACAD10	80724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	112186993	112186993	+	Silent	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	112186993	C	T	112186993	2	4	374	1	0	0	0	0	0	0	0	1	108	842	30	2		2	ACAD10	12	112186993	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08	1371727	112186993	21664902	72	21950											
C13orf1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	50495711	50495711	+	Silent	SNP	A	A	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	50495711	A	G	50495711	2	3	374	1	0	0	0	0	0	0	0	1	1719	358	13	3		3	C13orf1	13	50495711	Silent	SNP	A	TCGA-BP-4976-01A-01D-1462-08		50495711	64674167	73	21951											
CGRRF1	10668	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55004493	55004493	+	Silent	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	55004493	C	T	55004493	2	4	374	1	0	0	0	0	0	0	0	1	3308	718	25	2		2	CGRRF1	14	55004493	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08		55004493	52345047	74	21952											
C14orf45	0	broad.mit.edu;hgsc.bcm.edu	37	14	74489763	74489763	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	74489763	A	T	74489763	3	4	374	1	0	0	0	0	1	0	0	0	1777	359	13	5	207	5	C14orf45	14	74489763	Missense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08	19485270	74489763	32859777	75	21953											
SERF2	10169	broad.mit.edu;hgsc.bcm.edu	37	15	44087848	44087848	+	RNA	SNP	G	G	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	44087848	G	T	44087848	1	4	374	0	1	0	0	0	0	0	0	0	14089	957	33	4		4	SERF2	15	44087848	RNA	SNP	G	TCGA-BP-4976-01A-01D-1462-08		44087848	58443544	76	21954											
MPV17L	255027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15501886	15501886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	15501886	A	T	15501886	3	4	374	1	0	0	0	0	1	0	0	0	9753	304	11	5	522	5	MPV17L	16	15501886	Missense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08		15501886	74852867	77	21955											
METTL9	51108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	21666709	21666709	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	21666709	T	A	21666709	3	1	374	1	0	0	0	0	1	0	0	0	9515	1522	53	5	931	5	METTL9	16	21666709	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08	6164823	21666709	68688044	78	21956											
N4BP1	9683	hgsc.bcm.edu;ucsc.edu	37	16	48595915	48595918	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	TGTT	TGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	48595918	TGTT	-	48595915	7	5	374	1	0	1	0	1	0	0	0	0	10116	1567	55	0	2075	0	N4BP1	16	48595915	Frame_Shift_Del	DEL	TGTT	TCGA-BP-4976-01A-01D-1462-08	26929206	48595915	41758838	79	21957											
ALOXE3	59344	broad.mit.edu;ucsc.edu	37	17	8018347	8018347	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	8018347	C	C	8018347	3	2	374	1	0	0	0	0	1	0	0	0	542	188	7	5	1720	5	ALOXE3	17	8018347	Missense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08		8018347	73176863	80	21958											
SGK494	124923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26940338	26940338	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	26940338	G	C	26940338	3	2	374	1	0	0	0	0	1	0	0	0	14226	1174	41	4	922	4	SGK494	17	26940338	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	18921991	26940338	54254872	81	21959											
GJC1	10052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42882647	42882647	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	42882647	T	A	42882647	3	1	374	1	0	0	0	0	1	0	0	0	6421	1580	55	5	655	5	GJC1	17	42882647	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08	15942309	42882647	38312563	82	21960											
PRR11	55771	hgsc.bcm.edu;ucsc.edu	37	17	57262419	57262419	+	Missense_Mutation	SNP	G	G	C	rs114400215	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	57262419	G	C	57262419	3	2	374	1	0	0	0	0	1	0	0	0	12593	1116	39	4	139	4	PRR11	17	57262419	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	14379772	57262419	23932791	83	21961											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	7032162	7032162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	7032162	C	T	7032162	3	4	374	1	0	0	0	0	1	0	0	0	8612	739	26	2	7242	2	LAMA1	18	7032162	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08		7032162	71045086	84	21962											
ASXL3	80816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	31324962	31324962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	31324962	A	C	31324962	3	2	374	1	0	0	0	0	1	0	0	0	1068	246	9	5	5196	5	ASXL3	18	31324962	Missense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08	24292800	31324962	46752286	85	21963											
SMAD7	4092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	46474803	46474803	+	Silent	SNP	A	A	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	46474803	A	G	46474803	2	3	374	1	0	0	0	0	0	0	0	1	14776	291	11	3		3	SMAD7	18	46474803	Silent	SNP	A	TCGA-BP-4976-01A-01D-1462-08	15149841	46474803	31602445	86	21964											
APC2	10297	broad.mit.edu	37	19	1453570	1453570	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	1453570	T	T	1453570	3	4	374	1	0	0	0	0	1	0	0	0	764	643	23	1	383	1	APC2	19	1453570	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08		1453570	57675413	87	21965											
FZR1	51343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3533330	3533330	+	Silent	SNP	C	C	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	3533330	C	A	3533330	2	1	374	1	0	0	0	0	0	0	0	1	6145	900	32	4		4	FZR1	19	3533330	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08	2079760	3533330	55595653	88	21966											
SH2D3A	10045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6760899	6760899	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	6760899	C	-	6760899	7	5	374	1	0	1	0	1	0	0	0	0	14246	797	28	0	1593	0	SH2D3A	19	6760899	Frame_Shift_Del	DEL	C	TCGA-BP-4976-01A-01D-1462-08	3227569	6760899	52368084	89	21967											
RPL18A	6142	broad.mit.edu;hgsc.bcm.edu	37	19	17972160	17972160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	17972160	C	A	17972160	3	1	374	1	0	0	0	0	1	0	0	0	13578	623	22	4	83	4	RPL18A	19	17972160	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	11211261	17972160	41156823	90	21968											
ATP1A3	478	broad.mit.edu;hgsc.bcm.edu	37	19	42490382	42490382	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	42490382	C	A	42490382	5	1	374	1	0	0	0	0	0	0	1	0	1130	811	28	4	2760	4	ATP1A3	19	42490382	Splice_Site	SNP	C	TCGA-BP-4976-01A-01D-1462-08	24518222	42490382	16638601	91	21969											
PHLDB3	653583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	43999463	43999463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	43999463	C	T	43999463	3	4	374	1	0	0	0	0	1	0	0	0	11860	710	25	2	978	2	PHLDB3	19	43999463	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08	1509081	43999463	15129520	92	21970											
MYBPC2	4606	broad.mit.edu	37	19	50962223	50962223	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	50962223	A	A	50962223	3	1	374	1	0	0	0	0	1	0	0	0	10019	1087	38	1	2641	1	MYBPC2	19	50962223	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	6962760	50962223	8166760	93	21971											
SIGLEC9	27180	broad.mit.edu;ucsc.edu	37	19	51628430	51628430	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	51628430	C	C	51628430	3	2	374	1	0	0	0	0	1	0	0	0	14328	130	5	5	201	5	SIGLEC9	19	51628430	Missense_Mutation	SNP	A	TCGA-BP-4976-01A-01D-1462-08	666207	51628430	7500553	94	21972											
ZNF343	79175	broad.mit.edu;hgsc.bcm.edu	37	20	2464152	2464152	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	G	2464152	C	G	2464152	3	3	374	1	0	0	0	0	1	0	0	0	17870	854	30	4	348	4	ZNF343	20	2464152	Missense_Mutation	SNP	C	TCGA-BP-4976-01A-01D-1462-08		2464152	60561368	95	21973											
XRN2	22803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	21314413	21314413	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	21314413	G	C	21314413	3	2	374	1	0	0	0	0	1	0	0	0	17472	1241	43	4	1047	4	XRN2	20	21314413	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	18850261	21314413	41711107	96	21974											
KIF3B	9371	hgsc.bcm.edu;ucsc.edu	37	20	30919118	30919119	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	-	30919119	AG	-	30919118	7	5	374	1	0	1	0	1	0	0	0	0	8308	72	3	0	2270	0	KIF3B	20	30919118	Frame_Shift_Del	DEL	AG	TCGA-BP-4976-01A-01D-1462-08	9604705	30919118	32106402	97	21975											
SRC	6714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	36024602	36024602	+	Silent	SNP	C	C	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	36024602	C	A	36024602	2	1	374	1	0	0	0	0	0	0	0	1	15146	581	21	4		4	SRC	20	36024602	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08	5105484	36024602	27000918	98	21976											
OPRL1	4987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62729653	62729653	+	Silent	SNP	C	C	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	62729653	C	T	62729653	2	4	374	1	0	0	0	0	0	0	0	1	10893	681	24	2		2	OPRL1	20	62729653	Silent	SNP	C	TCGA-BP-4976-01A-01D-1462-08	26705051	62729653	295867	99	21977											
SEZ6L	23544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	26743810	26743810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	A	26743810	G	A	26743810	3	1	374	1	0	0	0	0	1	0	0	0	14156	1145	40	1	2380	1	SEZ6L	22	26743810	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08		26743810	24560756	100	21978											
DEPDC5	9681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	32188047	32188047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	32188047	T	C	32188047	3	2	374	1	0	0	0	0	1	0	0	0	4444	1696	59	3	691	3	DEPDC5	22	32188047	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08	5444237	32188047	19116519	101	21979											
MPST	4357	broad.mit.edu	37	22	37420797	37420797	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	T	37420797	T	T	37420797	3	4	374	1	0	0	0	0	1	0	0	0	9751	1261	44	4	607	4	MPST	22	37420797	Missense_Mutation	SNP	G	TCGA-BP-4976-01A-01D-1462-08	5232750	37420797	13883769	102	21980											
CYLC1	1538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	83128529	83128529	+	Silent	SNP	T	T	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	83128529	T	C	83128529	2	2	374	1	0	0	0	0	0	0	0	1	4143	1403	49	3		3	CYLC1	23	83128529	Silent	SNP	T	TCGA-BP-4976-01A-01D-1462-08		83128529	72142031	103	21981											
PNMA3	29944	broad.mit.edu	37	X	152226515	152226515	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4976-01A-01D-1462-08	TCGA-BP-4976-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	95bd81ec-3c06-4c4d-9915-5cc3dd7a7155	68ce0389-a530-4c46-bb35-d7308b0549f1	C	152226515	C	C	152226515	3	2	374	1	0	0	0	0	1	0	0	0	12162	1551	54	3	1105	3	PNMA3	23	152226515	Missense_Mutation	SNP	T	TCGA-BP-4976-01A-01D-1462-08	69097986	152226515	3044045	104	21982											
TAS1R2	80834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19167003	19167003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	19167003	G	A	19167003	3	1	375	1	0	0	0	0	1	0	0	0	15575	1203	42	2	913	2	TAS1R2	1	19167003	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08		19167003	230083618	1	21983											
ZBTB41	360023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197159944	197159944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	197159944	G	T	197159944	3	4	375	1	0	0	0	0	1	0	0	0	17555	1319	46	4	1415	4	ZBTB41	1	197159944	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08	177992941	197159944	52090677	2	21984											
CAPN9	10753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	230891141	230891141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	G	230891141	A	G	230891141	3	3	375	1	0	0	0	0	1	0	0	0	2634	188	7	3	278	3	CAPN9	1	230891141	Missense_Mutation	SNP	A	TCGA-BP-4977-01A-01D-1462-08	33731197	230891141	18359480	3	21985											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32693017	32693017	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	G	32693017	T	G	32693017	3	3	375	1	0	0	0	0	1	0	0	0	1438	1435	50	5	5728	5	BIRC6	2	32693017	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08		32693017	210506356	4	21986											
RANBP2	5903	broad.mit.edu	37	2	109382975	109382975	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	C	109382975	C	C	109382975	3	2	375	1	0	0	0	0	1	0	0	0	13041	1116	39	4	6058	4	RANBP2	2	109382975	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08	76689958	109382975	133816398	5	21987											
GALNT5	11227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	158115425	158115425	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	-	158115425	T	-	158115425	7	5	375	1	0	1	0	1	0	0	0	0	6223	1596	56	0	833	0	GALNT5	2	158115425	Frame_Shift_Del	DEL	T	TCGA-BP-4977-01A-01D-1462-08	48732450	158115425	85083948	6	21988											
COL5A2	1290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	189906379	189906379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	C	189906379	T	C	189906379	3	2	375	1	0	0	0	0	1	0	0	0	3699	1725	60	3	953	3	COL5A2	2	189906379	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08	31790954	189906379	53292994	7	21989											
SERPINE2	5270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	224866441	224866441	+	Silent	SNP	C	C	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	224866441	C	T	224866441	2	4	375	1	0	0	0	0	0	0	0	1	14125	523	19	1		1	SERPINE2	2	224866441	Silent	SNP	C	TCGA-BP-4977-01A-01D-1462-08	34960062	224866441	18332932	8	21990											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191611	10191612	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	-	10191612	AC	-	10191611	7	5	375	1	0	1	0	1	0	0	0	0	17174	275	10	0	614	0	VHL	3	10191611	Frame_Shift_Del	DEL	AC	TCGA-BP-4977-01A-01D-1462-08		10191611	187830819	9	21991											
MBD4	8930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	129152917	129152917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	G	129152917	A	G	129152917	3	3	375	1	0	0	0	0	1	0	0	0	9353	449	16	3	498	3	MBD4	3	129152917	Missense_Mutation	SNP	A	TCGA-BP-4977-01A-01D-1462-08	118961306	129152917	68869513	10	21992											
TMEM165	55858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	56277929	56277929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	C	56277929	T	C	56277929	3	2	375	1	0	0	0	0	1	0	0	0	16092	1435	50	3	362	3	TMEM165	4	56277929	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08		56277929	134876347	11	21993											
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127714472	127714472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	127714472	G	A	127714472	3	1	375	1	0	0	0	0	1	0	0	0	5710	1319	46	2	7239	2	FBN2	5	127714472	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08		127714472	53200788	12	21994											
SLC22A4	6583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131671519	131671519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	131671519	T	A	131671519	3	1	375	1	0	0	0	0	1	0	0	0	14469	1609	56	5	1300	5	SLC22A4	5	131671519	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08	3957047	131671519	49243741	13	21995											
RXRB	6257	broad.mit.edu	37	6	33168094	33168094	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	-	33168094	-	-	33168094	7	5	375	1	0	1	0	1	0	0	0	0	13777	739	26	0	1481	0	RXRB	6	33168094	Frame_Shift_Del	DEL	C	TCGA-BP-4977-01A-01D-1462-08		33168094	137946973	14	21996											
SEC63	11231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	108227661	108227661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	108227661	G	A	108227661	3	1	375	1	0	0	0	0	1	0	0	0	14018	1000	35	2	1378	2	SEC63	6	108227661	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08	75059567	108227661	62887406	15	21997											
CCDC129	223075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	31683360	31683360	+	Silent	SNP	C	C	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	31683360	C	A	31683360	2	1	375	1	0	0	0	0	0	0	0	1	2766	903	32	4		4	CCDC129	7	31683360	Silent	SNP	C	TCGA-BP-4977-01A-01D-1462-08		31683360	127455303	16	21998											
AEBP1	165	broad.mit.edu	37	7	44147521	44147521	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	44147521	A	A	44147521	3	1	375	1	0	0	0	0	1	0	0	0	349	1175	41	2	871	2	AEBP1	7	44147521	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08	12464161	44147521	114991142	17	21999											
COBL	23242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	51261213	51261213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	51261213	T	A	51261213	3	1	375	1	0	0	0	0	1	0	0	0	3655	1493	52	5	3510	5	COBL	7	51261213	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08	7113692	51261213	107877450	18	22000											
AKR1B10	57016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134221461	134221461	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	G	134221461	C	G	134221461	3	3	375	1	0	0	0	0	1	0	0	0	467	738	26	4	507	4	AKR1B10	7	134221461	Missense_Mutation	SNP	C	TCGA-BP-4977-01A-01D-1462-08	82960248	134221461	24917202	19	22001											
RNF32	140545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	156450264	156450264	+	Silent	SNP	C	C	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	156450264	C	T	156450264	2	4	375	1	0	0	0	0	0	0	0	1	13501	477	17	2		2	RNF32	7	156450264	Silent	SNP	C	TCGA-BP-4977-01A-01D-1462-08	22228803	156450264	2688399	20	22002											
ZNF782	158431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	99581317	99581317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	C	99581317	T	C	99581317	3	2	375	1	0	0	0	0	1	0	0	0	18167	1559	54	3	1115	3	ZNF782	9	99581317	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08		99581317	41632114	21	22003											
TNC	3371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	117840239	117840239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	117840239	T	A	117840239	3	1	375	1	0	0	0	0	1	0	0	0	16282	1841	64	5	4036	5	TNC	9	117840239	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08	18258922	117840239	23373192	22	22004											
LHX6	26468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	124975917	124975917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	124975917	G	A	124975917	3	1	375	1	0	0	0	0	1	0	0	0	8782	1087	38	1	227	1	LHX6	9	124975917	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08	7135678	124975917	16237514	23	22005											
MAMDC4	158056	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139748706	139748706	+	Silent	SNP	C	C	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	139748706	C	T	139748706	2	4	375	1	0	0	0	0	0	0	0	1	9211	477	17	2		2	MAMDC4	9	139748706	Silent	SNP	C	TCGA-BP-4977-01A-01D-1462-08	14772789	139748706	1464725	24	22006											
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	17151661	17151661	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	17151661	A	T	17151661	3	4	375	1	0	0	0	0	1	0	0	0	4053	214	8	5	10014	5	CUBN	10	17151661	Missense_Mutation	SNP	A	TCGA-BP-4977-01A-01D-1462-08		17151661	118383086	25	22007											
C10orf107	219621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	63520664	63520664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	63520664	C	T	63520664	3	4	375	1	0	0	0	0	1	0	0	0	1583	565	20	2	473	2	C10orf107	10	63520664	Missense_Mutation	SNP	C	TCGA-BP-4977-01A-01D-1462-08	46369003	63520664	72014083	26	22008											
ATE1	11101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	123503288	123503288	+	Silent	SNP	C	C	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	123503288	C	T	123503288	2	4	375	1	0	0	0	0	0	0	0	1	1078	796	28	2		2	ATE1	10	123503288	Silent	SNP	C	TCGA-BP-4977-01A-01D-1462-08	59982624	123503288	12031459	27	22009											
MOB2	81532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1491652	1491652	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	1491652	A	T	1491652	3	4	375	1	0	0	0	0	1	0	0	0	9688	188	7	5	253	5	MOB2	11	1491652	Missense_Mutation	SNP	A	TCGA-BP-4977-01A-01D-1462-08		1491652	133514864	28	22010											
C11orf73	51501	broad.mit.edu;hgsc.bcm.edu	37	11	86048459	86048459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	86048459	G	A	86048459	3	1	375	1	0	0	0	0	1	0	0	0	1663	1377	48	2	317	2	C11orf73	11	86048459	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08	84556807	86048459	48958057	29	22011											
PARP11	57097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	3939160	3939160	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	3939160	A	T	3939160	3	4	375	1	0	0	0	0	1	0	0	0	11463	98	4	5	1001	5	PARP11	12	3939160	Missense_Mutation	SNP	A	TCGA-BP-4977-01A-01D-1462-08		3939160	129912735	30	22012											
MON2	23041	broad.mit.edu	37	12	62887719	62887719	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	62887719	A	A	62887719	3	1	375	1	0	0	0	0	1	0	0	0	9707	1725	60	5	210	5	MON2	12	62887719	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08	58948559	62887719	70964176	31	22013											
C12orf74	338809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	93100735	93100735	+	Missense_Mutation	SNP	T	T	G	rs183080897	by1000genomes;alternate_allele	TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	G	93100735	T	G	93100735	3	3	375	1	0	0	0	0	1	0	0	0	1716	1551	54	5	330	5	C12orf74	12	93100735	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08	30213016	93100735	40751160	32	22014											
C13orf31	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	44458052	44458052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	44458052	C	A	44458052	3	1	375	1	0	0	0	0	1	0	0	0	1728	710	25	4	897	4	C13orf31	13	44458052	Missense_Mutation	SNP	C	TCGA-BP-4977-01A-01D-1462-08		44458052	70711826	33	22015											
ATP7B	540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	52511675	52511675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	52511675	C	T	52511675	3	4	375	1	0	0	0	0	1	0	0	0	1191	594	21	2	573	2	ATP7B	13	52511675	Missense_Mutation	SNP	C	TCGA-BP-4977-01A-01D-1462-08	8053623	52511675	62658203	34	22016											
ZFYVE26	23503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	68270971	68270971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	68270971	G	T	68270971	3	4	375	1	0	0	0	0	1	0	0	0	17680	1261	44	4	6473	4	ZFYVE26	14	68270971	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08		68270971	39078569	35	22017											
THBS1	7057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	39877708	39877708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	C	39877708	T	C	39877708	3	2	375	1	0	0	0	0	1	0	0	0	15865	1435	50	3	1086	3	THBS1	15	39877708	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08		39877708	62653684	36	22018											
ADCY9	115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4165079	4165079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	C	4165079	T	C	4165079	3	2	375	1	0	0	0	0	1	0	0	0	301	1638	57	3	3736	3	ADCY9	16	4165079	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08		4165079	86189674	37	22019											
CDH1	999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68862136	68862136	+	Silent	SNP	C	C	T	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	68862136	C	T	68862136	2	4	375	1	0	0	0	0	0	0	0	1	3097	564	20	2		2	CDH1	16	68862136	Silent	SNP	C	TCGA-BP-4977-01A-01D-1462-08	64697057	68862136	21492617	38	22020											
OR3A1	4994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3195183	3195183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	3195183	G	A	3195183	3	1	375	1	0	0	0	0	1	0	0	0	11044	1058	37	1	257	1	OR3A1	17	3195183	Missense_Mutation	SNP	G	TCGA-BP-4977-01A-01D-1462-08		3195183	78000027	39	22021											
SSH2	85464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27999019	27999019	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	G	27999019	T	G	27999019	3	3	375	1	0	0	0	0	1	0	0	0	15197	1493	52	5	3641	5	SSH2	17	27999019	Missense_Mutation	SNP	T	TCGA-BP-4977-01A-01D-1462-08	24803836	27999019	53196191	40	22022											
SDK2	54549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	71429905	71429905	+	Silent	SNP	C	C	T	rs142980422	by1000genomes	TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	T	71429905	C	T	71429905	2	4	375	1	0	0	0	0	0	0	0	1	13982	639	23	1		1	SDK2	17	71429905	Silent	SNP	C	TCGA-BP-4977-01A-01D-1462-08	43430886	71429905	9765305	41	22023											
TMX3	54495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	66367641	66367641	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	66367641	C	A	66367641	5	1	375	1	0	0	0	0	0	0	1	0	16280	521	18	4	1015	4	TMX3	18	66367641	Splice_Site	SNP	C	TCGA-BP-4977-01A-01D-1462-08		66367641	11709607	42	22024											
FXYD5	53827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	35651641	35651641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	35651641	C	A	35651641	3	1	375	1	0	0	0	0	1	0	0	0	6128	711	25	4	243	4	FXYD5	19	35651641	Missense_Mutation	SNP	C	TCGA-BP-4977-01A-01D-1462-08		35651641	23477342	43	22025											
TEX11	56159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	69825332	69825332	+	Silent	SNP	C	C	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	69825332	C	A	69825332	2	1	375	1	0	0	0	0	0	0	0	1	15786	813	29	4		4	TEX11	23	69825332	Silent	SNP	C	TCGA-BP-4977-01A-01D-1462-08		69825332	85445228	44	22026											
SLC7A3	84889	broad.mit.edu;hgsc.bcm.edu	37	X	70148386	70148386	+	Silent	SNP	G	G	A	novel		TCGA-BP-4977-01A-01D-1462-08	TCGA-BP-4977-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c3bf7c1-07d9-4540-9a5e-614fd60b63ec	1a98cd70-7661-4e02-8d83-30b08d24ceac	A	70148386	G	A	70148386	2	1	375	1	0	0	0	0	0	0	0	1	14711	1049	37	1		1	SLC7A3	23	70148386	Silent	SNP	G	TCGA-BP-4977-01A-01D-1462-08	323054	70148386	85122174	45	22027											
MKNK1	8569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	47028508	47028508	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	47028508	G	C	47028508	3	2	376	1	0	0	0	0	1	0	0	0	9611	942	33	4	637	4	MKNK1	1	47028508	Missense_Mutation	SNP	G	TCGA-BP-4981-01A-01D-1462-08		47028508	202222113	1	22028											
CYP4A11	1579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	47401233	47401233	+	Silent	SNP	C	C	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	47401233	C	T	47401233	2	4	376	1	0	0	0	0	0	0	0	1	4185	564	20	2		2	CYP4A11	1	47401233	Silent	SNP	C	TCGA-BP-4981-01A-01D-1462-08	372725	47401233	201849388	2	22029											
FLG	2312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152285874	152285874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	152285874	G	T	152285874	3	4	376	1	0	0	0	0	1	0	0	0	5929	1252	44	4	10701	4	FLG	1	152285874	Missense_Mutation	SNP	G	TCGA-BP-4981-01A-01D-1462-08	104884641	152285874	96964747	3	22030											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu	37	1	186017962	186017962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	186017962	A	C	186017962	3	2	376	1	0	0	0	0	1	0	0	0	7227	130	5	5	6734	5	HMCN1	1	186017962	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08	33732088	186017962	63232659	4	22031											
KIF14	9928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200586908	200586908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	A	200586908	T	A	200586908	3	1	376	1	0	0	0	0	1	0	0	0	8283	1812	63	5	4118	5	KIF14	1	200586908	Missense_Mutation	SNP	T	TCGA-BP-4981-01A-01D-1462-08	14568946	200586908	48663713	5	22032											
ASXL2	55252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	25967152	25967152	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	25967152	G	C	25967152	4	2	376	1	0	0	0	0	0	1	0	0	1067	1294	45	4	2257	4	ASXL2	2	25967152	Nonsense_Mutation	SNP	G	TCGA-BP-4981-01A-01D-1462-08		25967152	217232221	6	22033											
INO80B	83444	hgsc.bcm.edu	37	2	74684832	74684832	+	Silent	SNP	C	C	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	74684832	C	G	74684832	2	3	376	1	0	0	0	0	0	0	0	1	7754	726	26	4		4	INO80B	2	74684832	Silent	SNP	C	TCGA-BP-4981-01A-01D-1462-08	48717680	74684832	168514541	7	22034											
GCC2	9648	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	109103098	109103098	+	Silent	SNP	T	T	A	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	A	109103098	T	A	109103098	2	1	376	1	0	0	0	0	0	0	0	1	6293	1567	55	5		5	GCC2	2	109103098	Silent	SNP	T	TCGA-BP-4981-01A-01D-1462-08	34418266	109103098	134096275	8	22035											
GADL1	339896	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	30769765	30769765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	30769765	T	C	30769765	3	2	376	1	0	0	0	0	1	0	0	0	6192	1435	50	3	34	3	GADL1	3	30769765	Missense_Mutation	SNP	T	TCGA-BP-4981-01A-01D-1462-08		30769765	167252665	9	22036											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52662911	52662911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	-	52662911	T	-	52662911	7	5	376	1	0	1	0	1	0	0	0	0	11498	1594	55	0	3534	0	PBRM1	3	52662911	Frame_Shift_Del	DEL	T	TCGA-BP-4981-01A-01D-1462-08	21893146	52662911	145359519	10	22037											
ZNF148	7707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	125032327	125032327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	125032327	G	T	125032327	3	4	376	1	0	0	0	0	1	0	0	0	17746	1000	35	4	2250	4	ZNF148	3	125032327	Missense_Mutation	SNP	G	TCGA-BP-4981-01A-01D-1462-08	72369416	125032327	72990103	11	22038											
MRPS22	56945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	139074556	139074556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	139074556	A	G	139074556	3	3	376	1	0	0	0	0	1	0	0	0	9840	449	16	3	937	3	MRPS22	3	139074556	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08	14042229	139074556	58947874	12	22039											
PLSCR5	389158	broad.mit.edu	37	3	146311927	146311927	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	146311927	C	C	146311927	3	2	376	1	0	0	0	0	1	0	0	0	12120	173	6	5	598	5	PLSCR5	3	146311927	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08	7237371	146311927	51710503	13	22040											
KPNA4	3840	broad.mit.edu;ucsc.edu	37	3	160254590	160254590	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	160254590	G	G	160254590	3	3	376	1	0	0	0	0	1	0	0	0	8439	1751	61	5	1521	5	KPNA4	3	160254590	Missense_Mutation	SNP	T	TCGA-BP-4981-01A-01D-1462-08	13942663	160254590	37767840	14	22041											
FAM193A	8603	hgsc.bcm.edu	37	4	2664872	2664873	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	A	2664873	-	A	2664872	7	5	376	1	0	1	1	0	0	0	0	0	5528	943	33	0	1093	0	FAM193A	4	2664872	Frame_Shift_Ins	INS	-	TCGA-BP-4981-01A-01D-1462-08		2664872	188489404	15	22042											
BOD1L	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	13602085	13602085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	13602085	T	C	13602085	3	2	376	1	0	0	0	0	1	0	0	0	1483	1609	56	3	2784	3	BOD1L	4	13602085	Missense_Mutation	SNP	T	TCGA-BP-4981-01A-01D-1462-08	10937213	13602085	177552191	16	22043											
UTP3	57050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71555786	71555786	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	71555786	A	C	71555786	3	2	376	1	0	0	0	0	1	0	0	0	17113	98	4	5	1394	5	UTP3	4	71555786	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08	57953701	71555786	119598490	17	22044											
HNRPDL	9987	broad.mit.edu	37	4	83350567	83350567	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	83350567	C	C	83350567	3	2	376	1	0	0	0	0	1	0	0	0	7283	1580	55	3	1013	3	HNRPDL	4	83350567	Missense_Mutation	SNP	T	TCGA-BP-4981-01A-01D-1462-08	11794781	83350567	107803709	18	22045											
INTU	27152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	128605608	128605608	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	128605608	A	T	128605608	3	4	376	1	0	0	0	0	1	0	0	0	7793	130	5	5	1252	5	INTU	4	128605608	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08	45255041	128605608	62548668	19	22046											
PCDHA12	56137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140255597	140255597	+	Silent	SNP	T	T	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	140255597	T	G	140255597	2	3	376	1	0	0	0	0	0	0	0	1	11529	1741	61	5		5	PCDHA12	5	140255597	Silent	SNP	T	TCGA-BP-4981-01A-01D-1462-08		140255597	40659663	20	22047											
C5orf25	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	175772242	175772242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	175772242	C	T	175772242	3	4	376	1	0	0	0	0	1	0	0	0	2290	739	26	2	1202	2	C5orf25	5	175772242	Missense_Mutation	SNP	C	TCGA-BP-4981-01A-01D-1462-08	35516645	175772242	5143018	21	22048											
MICA	100507436	broad.mit.edu;ucsc.edu	37	6	31379000	31379000	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	31379000	T	T	31379000	3	4	376	1	0	0	0	0	1	0	0	0	9575	933	33	4	487	4	MICA	6	31379000	Missense_Mutation	SNP	G	TCGA-BP-4981-01A-01D-1462-08		31379000	139736067	22	22049											
TINAG	27283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	54212217	54212217	+	Silent	SNP	T	T	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	54212217	T	C	54212217	2	2	376	1	0	0	0	0	0	0	0	1	15933	1432	50	3		3	TINAG	6	54212217	Silent	SNP	T	TCGA-BP-4981-01A-01D-1462-08	22833217	54212217	116902850	23	22050											
TNS3	64759	broad.mit.edu;ucsc.edu	37	7	47384579	47384579	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	47384579	C	C	47384579	3	2	376	1	0	0	0	0	1	0	0	0	16356	1522	53	3	1880	3	TNS3	7	47384579	Missense_Mutation	SNP	T	TCGA-BP-4981-01A-01D-1462-08		47384579	111754084	24	22051											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	48313955	48313955	+	Silent	SNP	C	C	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	48313955	C	T	48313955	2	4	376	1	0	0	0	0	0	0	0	1	31	477	17	2		2	ABCA13	7	48313955	Silent	SNP	C	TCGA-BP-4981-01A-01D-1462-08	929376	48313955	110824708	25	22052											
ASPH	444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	62588827	62588827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	62588827	A	G	62588827	3	3	376	1	0	0	0	0	1	0	0	0	1053	72	3	3	2657	3	ASPH	8	62588827	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08		62588827	83775195	26	22053											
HRCT1	646962	hgsc.bcm.edu	37	9	35906601	35906601	+	Missense_Mutation	SNP	C	C	A	rs112212538	bycluster;byfrequency;by1000genomes	TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	A	35906601	C	A	35906601	3	1	376	1	0	0	0	0	1	0	0	0	7360	623	22	4	319	4	HRCT1	9	35906601	Missense_Mutation	SNP	C	TCGA-BP-4981-01A-01D-1462-08		35906601	105306830	27	22054											
UCK1	83549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	134405914	134405914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	134405914	T	G	134405914	3	3	376	1	0	0	0	0	1	0	0	0	16935	1609	56	5	630	5	UCK1	9	134405914	Missense_Mutation	SNP	T	TCGA-BP-4981-01A-01D-1462-08	98499313	134405914	6807517	28	22055											
RAPGEF1	2889	broad.mit.edu	37	9	134612882	134612882	+	Translation_Start_Site	SNP	C	T	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	134612882	T	T	134612882	1	4	376	1	0	0	0	0	0	0	0	0	13056	580	20	2		2	RAPGEF1	9	134612882	Translation_Start_Site	SNP	C	TCGA-BP-4981-01A-01D-1462-08	206968	134612882	6600549	29	22056											
C9orf96	169436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136260828	136260828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	136260828	A	C	136260828	3	2	376	1	0	0	0	0	1	0	0	0	2510	11	1	5	838	5	C9orf96	9	136260828	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08	1647946	136260828	4952603	30	22057											
ERCC6	2074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	50738880	50738880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	50738880	A	C	50738880	3	2	376	1	0	0	0	0	1	0	0	0	5219	389	14	5	4128	5	ERCC6	10	50738880	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08		50738880	84795867	31	22058											
VCL	7414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75860838	75860838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	75860838	C	G	75860838	3	3	376	1	0	0	0	0	1	0	0	0	17151	644	23	4	2059	4	VCL	10	75860838	Missense_Mutation	SNP	C	TCGA-BP-4981-01A-01D-1462-08	25121958	75860838	59673909	32	22059											
SMPD1	6609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6415569	6415569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	6415569	A	T	6415569	3	4	376	1	0	0	0	0	1	0	0	0	14817	246	9	5	1690	5	SMPD1	11	6415569	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08		6415569	128590947	33	22060											
MTCH2	23788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47652589	47652589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	47652589	A	G	47652589	3	3	376	1	0	0	0	0	1	0	0	0	9921	202	7	3	461	3	MTCH2	11	47652589	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08	41237020	47652589	87353927	34	22061											
KDM5A	5927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	442728	442728	+	Silent	SNP	A	A	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	442728	A	G	442728	2	3	376	1	0	0	0	0	0	0	0	1	8140	127	5	3		3	KDM5A	12	442728	Silent	SNP	A	TCGA-BP-4981-01A-01D-1462-08		442728	133409167	35	22062											
PKP2	5318	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32949147	32949147	+	Silent	SNP	G	G	A	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	A	32949147	G	A	32949147	2	1	376	1	0	0	0	0	0	0	0	1	11992	987	35	2		2	PKP2	12	32949147	Silent	SNP	G	TCGA-BP-4981-01A-01D-1462-08	32506419	32949147	100902748	36	22063											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53682952	53682952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	53682952	T	C	53682952	3	2	376	1	0	0	0	0	1	0	0	0	5255	1551	54	3	4865	3	ESPL1	12	53682952	Missense_Mutation	SNP	T	TCGA-BP-4981-01A-01D-1462-08	20733805	53682952	80168943	37	22064											
RDH16	8608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57346629	57346629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	57346629	C	T	57346629	3	4	376	1	0	0	0	0	1	0	0	0	13207	893	31	1	243	1	RDH16	12	57346629	Missense_Mutation	SNP	C	TCGA-BP-4981-01A-01D-1462-08	3663677	57346629	76505266	38	22065											
P2RX2	22953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133198270	133198270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	133198270	G	T	133198270	3	4	376	1	0	0	0	0	1	0	0	0	11347	933	33	4	1244	4	P2RX2	12	133198270	Missense_Mutation	SNP	G	TCGA-BP-4981-01A-01D-1462-08	75851641	133198270	653625	39	22066											
PCID2	55795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	113854792	113854792	+	Silent	SNP	A	A	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	113854792	A	G	113854792	2	3	376	1	0	0	0	0	0	0	0	1	11586	157	6	3		3	PCID2	13	113854792	Silent	SNP	A	TCGA-BP-4981-01A-01D-1462-08		113854792	1315086	40	22067											
PRKCH	5583	broad.mit.edu	37	14	61789073	61789073	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	61789073	T	T	61789073	3	4	376	1	0	0	0	0	1	0	0	0	12523	739	26	2	256	2	PRKCH	14	61789073	Missense_Mutation	SNP	C	TCGA-BP-4981-01A-01D-1462-08		61789073	45560467	41	22068											
HSP90AA1	3320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	102551690	102551690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	102551690	A	G	102551690	3	3	376	1	0	0	0	0	1	0	0	0	7408	449	16	3	1622	3	HSP90AA1	14	102551690	Missense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08	40762617	102551690	4797850	42	22069											
AHNAK2	113146	broad.mit.edu;hgsc.bcm.edu	37	14	105410662	105410662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	105410662	C	T	105410662	3	4	376	1	0	0	0	0	1	0	0	0	415	739	26	2	6265	2	AHNAK2	14	105410662	Missense_Mutation	SNP	C	TCGA-BP-4981-01A-01D-1462-08	2858972	105410662	1938878	43	22070											
MSLN	10232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	816775	816775	+	Silent	SNP	C	C	G	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	G	816775	C	G	816775	2	3	376	1	0	0	0	0	0	0	0	1	9888	639	23	4		4	MSLN	16	816775	Silent	SNP	C	TCGA-BP-4981-01A-01D-1462-08		816775	89537978	44	22071											
MYH11	4629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15872668	15872668	+	Silent	SNP	C	C	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	15872668	C	T	15872668	2	4	376	1	0	0	0	0	0	0	0	1	10038	639	23	1		1	MYH11	16	15872668	Silent	SNP	C	TCGA-BP-4981-01A-01D-1462-08	15055893	15872668	74482085	45	22072											
NOMO3	408050	hgsc.bcm.edu	37	16	16374089	16374089	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	-	16374089	G	-	16374089	7	5	376	1	0	1	0	1	0	0	0	0	10540	1000	35	0	3027	0	NOMO3	16	16374089	Frame_Shift_Del	DEL	G	TCGA-BP-4981-01A-01D-1462-08	501421	16374089	73980664	46	22073											
NOMO2	283820	hgsc.bcm.edu	37	16	18525759	18525759	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	-	18525759	C	-	18525759	7	5	376	1	0	1	0	1	0	0	0	0	10539	507	18	0	907	0	NOMO2	16	18525759	Frame_Shift_Del	DEL	C	TCGA-BP-4981-01A-01D-1462-08	2151670	18525759	71828994	47	22074											
METTL9	51108	broad.mit.edu;hgsc.bcm.edu	37	16	21611123	21611123	+	Silent	SNP	G	G	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	21611123	G	C	21611123	2	2	376	1	0	0	0	0	0	0	0	1	9515	1074	38	4		4	METTL9	16	21611123	Silent	SNP	G	TCGA-BP-4981-01A-01D-1462-08	3085364	21611123	68743630	48	22075											
CDH11	1009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	64984852	64984852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	A	64984852	G	A	64984852	3	1	376	1	0	0	0	0	1	0	0	0	3099	1232	43	2	686	2	CDH11	16	64984852	Missense_Mutation	SNP	G	TCGA-BP-4981-01A-01D-1462-08	43373729	64984852	25369901	49	22076											
TMEM49	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57915760	57915760	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	57915760	T	C	57915760	5	2	376	1	0	0	0	0	0	0	1	0	16185	1652	57	3	1117	3	TMEM49	17	57915760	Splice_Site	SNP	T	TCGA-BP-4981-01A-01D-1462-08		57915760	23279450	50	22077											
ANKRD12	23253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	9211598	9211598	+	Silent	SNP	T	T	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	9211598	T	C	9211598	2	2	376	1	0	0	0	0	0	0	0	1	640	1432	50	3		3	ANKRD12	18	9211598	Silent	SNP	T	TCGA-BP-4981-01A-01D-1462-08		9211598	68865650	51	22078											
THEG	51298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	375870	375870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	375870	C	T	375870	3	4	376	1	0	0	0	0	1	0	0	0	15869	797	28	2	1070	2	THEG	19	375870	Missense_Mutation	SNP	C	TCGA-BP-4981-01A-01D-1462-08		375870	58753113	52	22079											
DOT1L	84444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2214517	2214517	+	Silent	SNP	G	G	A	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	A	2214517	G	A	2214517	2	1	376	1	0	0	0	0	0	0	0	1	4711	1074	38	1		1	DOT1L	19	2214517	Silent	SNP	G	TCGA-BP-4981-01A-01D-1462-08	1838647	2214517	56914466	53	22080											
VAV1	7409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6828883	6828883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	C	6828883	T	C	6828883	3	2	376	1	0	0	0	0	1	0	0	0	17143	1551	54	3	1287	3	VAV1	19	6828883	Missense_Mutation	SNP	T	TCGA-BP-4981-01A-01D-1462-08	4614366	6828883	52300100	54	22081											
EMR3	84658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14749072	14749072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	14749072	G	T	14749072	3	4	376	1	0	0	0	0	1	0	0	0	5108	1252	44	4	653	4	EMR3	19	14749072	Missense_Mutation	SNP	G	TCGA-BP-4981-01A-01D-1462-08	7920189	14749072	44379911	55	22082											
SIGLEC11	114132	broad.mit.edu;hgsc.bcm.edu	37	19	50461806	50461806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	A	50461806	G	A	50461806	3	1	376	1	0	0	0	0	1	0	0	0	14320	1232	43	2	727	2	SIGLEC11	19	50461806	Missense_Mutation	SNP	G	TCGA-BP-4981-01A-01D-1462-08	35712734	50461806	8667177	56	22083											
CHGB	1114	broad.mit.edu;hgsc.bcm.edu	37	20	5903114	5903114	+	Silent	SNP	G	G	A	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	A	5903114	G	A	5903114	2	1	376	1	0	0	0	0	0	0	0	1	3341	1219	43	2		2	CHGB	20	5903114	Silent	SNP	G	TCGA-BP-4981-01A-01D-1462-08		5903114	57122406	57	22084											
PHF20	51230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34487450	34487450	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	34487450	A	T	34487450	4	4	376	1	0	0	0	0	0	1	0	0	11838	247	9	5	1475	5	PHF20	20	34487450	Nonsense_Mutation	SNP	A	TCGA-BP-4981-01A-01D-1462-08	28584336	34487450	28538070	58	22085											
MC3R	4159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	54824097	54824097	+	Silent	SNP	C	C	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	54824097	C	T	54824097	2	4	376	1	0	0	0	0	0	0	0	1	9372	535	19	1		1	MC3R	20	54824097	Silent	SNP	C	TCGA-BP-4981-01A-01D-1462-08	20336647	54824097	8201423	59	22086											
COL4A5	1287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107909822	107909822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4981-01A-01D-1462-08	TCGA-BP-4981-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a1f085-50cc-4129-a617-e0f691a58039	9e6bf5b2-d784-40eb-a221-80f2bf7894dd	T	107909822	C	T	107909822	3	4	376	1	0	0	0	0	1	0	0	0	3696	594	21	2	3705	2	COL4A5	23	107909822	Missense_Mutation	SNP	C	TCGA-BP-4981-01A-01D-1462-08		107909822	47360738	60	22087											
AGRN	375790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	970662	970662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	970662	C	A	970662	3	1	377	1	0	0	0	0	1	0	0	0	397	507	18	4	479	4	AGRN	1	970662	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08		970662	248279959	1	22088											
ACADM	34	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	76205772	76205772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	G	76205772	A	G	76205772	3	3	377	1	0	0	0	0	1	0	0	0	113	352	13	3	614	3	ACADM	1	76205772	Missense_Mutation	SNP	A	TCGA-BP-4982-01A-01D-1462-08	75235110	76205772	173044849	2	22089											
CLCC1	23155	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109482394	109482394	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	T	109482394	A	T	109482394	3	4	377	1	0	0	0	0	1	0	0	0	3462	43	2	5	762	5	CLCC1	1	109482394	Missense_Mutation	SNP	A	TCGA-BP-4982-01A-01D-1462-08	33276622	109482394	139768227	3	22090											
UBL4B	164153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110655193	110655193	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	110655193	T	A	110655193	3	1	377	1	0	0	0	0	1	0	0	0	16900	1464	51	5	39	5	UBL4B	1	110655193	Missense_Mutation	SNP	T	TCGA-BP-4982-01A-01D-1462-08	1172799	110655193	138595428	4	22091											
AP4B1	10717	broad.mit.edu;ucsc.edu	37	1	114439000	114439000	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	114439000	A	A	114439000	3	1	377	1	0	0	0	0	1	0	0	0	751	478	17	4	841	4	AP4B1	1	114439000	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08	3783807	114439000	134811621	5	22092											
C1orf65	164127	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223568377	223568377	+	Silent	SNP	C	C	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	T	223568377	C	T	223568377	2	4	377	1	0	0	0	0	0	0	0	1	2057	535	19	1		1	C1orf65	1	223568377	Silent	SNP	C	TCGA-BP-4982-01A-01D-1462-08	109129377	223568377	25682244	6	22093											
PARP1	142	broad.mit.edu;ucsc.edu	37	1	226564845	226564845	+	Silent	SNP	G	C	C	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	C	226564845	C	C	226564845	2	2	377	1	0	0	0	0	0	0	0	1	11461	1335	47	4		4	PARP1	1	226564845	Silent	SNP	G	TCGA-BP-4982-01A-01D-1462-08	2996468	226564845	22685776	7	22094											
PLB1	151056	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	28752200	28752200	+	Silent	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	28752200	C	A	28752200	2	1	377	1	0	0	0	0	0	0	0	1	12031	816	29	4		4	PLB1	2	28752200	Silent	SNP	C	TCGA-BP-4982-01A-01D-1462-08		28752200	214447173	8	22095											
VHL	7428	broad.mit.edu	37	3	10183794	10183794	+	Nonsense_Mutation	SNP	G	A	A	rs119103277	alternate_allele	TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454;Illumina Miseq;PacBio			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	10183794	A	A	10183794	4	1	377	1	0	0	0	0	0	1	0	0	17174	1357	47	2	265	2	VHL	3	10183794	Nonsense_Mutation	SNP	G	TCGA-BP-4982-01A-01D-1462-08		10183794	187838636	9	22096											
XPC	7508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	14188848	14188848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	G	14188848	T	G	14188848	3	3	377	1	0	0	0	0	1	0	0	0	17453	1609	56	5	284	5	XPC	3	14188848	Missense_Mutation	SNP	T	TCGA-BP-4982-01A-01D-1462-08	4005054	14188848	183833582	10	22097											
SCAP	22937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47455554	47455554	+	Silent	SNP	T	T	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	47455554	T	A	47455554	2	1	377	1	0	0	0	0	0	0	0	1	13890	1567	55	5		5	SCAP	3	47455554	Silent	SNP	T	TCGA-BP-4982-01A-01D-1462-08	33266706	47455554	150566876	11	22098											
NDUFAF3	25915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49059885	49059885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	G	49059885	A	G	49059885	3	3	377	1	0	0	0	0	1	0	0	0	10283	188	7	3	190	3	NDUFAF3	3	49059885	Missense_Mutation	SNP	A	TCGA-BP-4982-01A-01D-1462-08	1604331	49059885	148962545	12	22099											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52702612	52702612	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	52702612	T	A	52702612	4	1	377	1	0	0	0	0	0	1	0	0	11498	1792	62	5	4726	5	PBRM1	3	52702612	Nonsense_Mutation	SNP	T	TCGA-BP-4982-01A-01D-1462-08	3642727	52702612	145319818	13	22100											
NIT2	56954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	100059917	100059917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	T	100059917	G	T	100059917	3	4	377	1	0	0	0	0	1	0	0	0	10441	1217	42	4	262	4	NIT2	3	100059917	Missense_Mutation	SNP	G	TCGA-BP-4982-01A-01D-1462-08	47357305	100059917	97962513	14	22101	266	2									
NIT2	56954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	100059918	100059918	+	Silent	SNP	C	C	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	T	100059918	C	T	100059918	2	4	377	1	0	0	0	0	0	0	0	1	10441	811	28	2		2	NIT2	3	100059918	Silent	SNP	C	TCGA-BP-4982-01A-01D-1462-08	1	100059918	97962512	15	22102	266	2									
C3orf17	25871	broad.mit.edu;hgsc.bcm.edu	37	3	112732116	112732116	+	RNA	SNP	T	T	C	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	C	112732116	T	C	112732116	1	2	377	0	1	0	0	0	0	0	0	0	2212	1421	49	3		3	C3orf17	3	112732116	RNA	SNP	T	TCGA-BP-4982-01A-01D-1462-08	12672198	112732116	85290314	16	22103											
SKIV2L2	23517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	54618206	54618206	+	Silent	SNP	T	T	C	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	C	54618206	T	C	54618206	2	2	377	1	0	0	0	0	0	0	0	1	14373	1403	49	3		3	SKIV2L2	5	54618206	Silent	SNP	T	TCGA-BP-4982-01A-01D-1462-08		54618206	126297054	17	22104											
OR2H2	7932	broad.mit.edu;hgsc.bcm.edu	37	6	29556320	29556320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	T	29556320	C	T	29556320	3	4	377	1	0	0	0	0	1	0	0	0	11009	739	26	2	601	2	OR2H2	6	29556320	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08		29556320	141558747	18	22105											
TCP11	6954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35086135	35086135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	T	35086135	G	T	35086135	3	4	377	1	0	0	0	0	1	0	0	0	15725	1299	45	4	92	4	TCP11	6	35086135	Missense_Mutation	SNP	G	TCGA-BP-4982-01A-01D-1462-08	5529815	35086135	136028932	19	22106											
CUX1	1523	broad.mit.edu;hgsc.bcm.edu	37	7	101813771	101813771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	101813771	C	A	101813771	3	1	377	1	0	0	0	0	1	0	0	0	4066	797	28	4	874	4	CUX1	7	101813771	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08		101813771	57324892	20	22107											
UBE2H	7328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129592346	129592346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	129592346	T	A	129592346	3	1	377	1	0	0	0	0	1	0	0	0	16870	1609	56	5	529	5	UBE2H	7	129592346	Missense_Mutation	SNP	T	TCGA-BP-4982-01A-01D-1462-08	27778575	129592346	29546317	21	22108											
WHSC1L1	54904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38173525	38173525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	C	38173525	T	C	38173525	3	2	377	1	0	0	0	0	1	0	0	0	17375	1850	64	3	2482	3	WHSC1L1	8	38173525	Missense_Mutation	SNP	T	TCGA-BP-4982-01A-01D-1462-08		38173525	108190497	22	22109											
SPAG8	26206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35810979	35810979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	35810979	G	A	35810979	3	1	377	1	0	0	0	0	1	0	0	0	14997	1115	39	1	788	1	SPAG8	9	35810979	Missense_Mutation	SNP	G	TCGA-BP-4982-01A-01D-1462-08		35810979	105402452	23	22110											
SYT15	83849	broad.mit.edu;hgsc.bcm.edu	37	10	46968685	46968685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	G	46968685	T	G	46968685	3	3	377	1	0	0	0	0	1	0	0	0	15483	1812	63	5	1092	5	SYT15	10	46968685	Missense_Mutation	SNP	T	TCGA-BP-4982-01A-01D-1462-08		46968685	88566062	24	22111											
SUPV3L1	6832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70967647	70967647	+	Silent	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	70967647	C	A	70967647	2	1	377	1	0	0	0	0	0	0	0	1	15414	813	29	4		4	SUPV3L1	10	70967647	Silent	SNP	C	TCGA-BP-4982-01A-01D-1462-08	23998962	70967647	64567100	25	22112											
HPSE2	60495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	100481428	100481428	+	Silent	SNP	G	G	A	rs142810016	alternate_allele	TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	100481428	G	A	100481428	2	1	377	1	0	0	0	0	0	0	0	1	7352	1048	37	1		1	HPSE2	10	100481428	Silent	SNP	G	TCGA-BP-4982-01A-01D-1462-08	29513781	100481428	35053319	26	22113											
CCDC59	29080	hgsc.bcm.edu;ucsc.edu	37	12	82752142	82752143	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	-	82752143	CT	-	82752142	7	5	377	1	0	1	0	1	0	0	0	0	2831	681	24	0	727	0	CCDC59	12	82752142	Frame_Shift_Del	DEL	CT	TCGA-BP-4982-01A-01D-1462-08		82752142	51099753	27	22114											
ACIN1	22985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23549183	23549183	+	Missense_Mutation	SNP	T	T	A	rs112438189	alternate_allele	TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	23549183	T	A	23549183	3	1	377	1	0	0	0	0	1	0	0	0	142	1638	57	5	2693	5	ACIN1	14	23549183	Missense_Mutation	SNP	T	TCGA-BP-4982-01A-01D-1462-08		23549183	83800357	28	22115											
GLDN	342035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51696755	51696755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	51696755	C	A	51696755	3	1	377	1	0	0	0	0	1	0	0	0	6441	507	18	4	1498	4	GLDN	15	51696755	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08		51696755	50834637	29	22116											
NDE1	54820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15761201	15761201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	15761201	G	A	15761201	3	1	377	1	0	0	0	0	1	0	0	0	10250	971	34	2	148	2	NDE1	16	15761201	Missense_Mutation	SNP	G	TCGA-BP-4982-01A-01D-1462-08		15761201	74593552	30	22117	267	2									
NDE1	54820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15761202	15761202	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	G	15761202	C	G	15761202	3	3	377	1	0	0	0	0	1	0	0	0	10250	797	28	4	149	4	NDE1	16	15761202	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08	1	15761202	74593551	31	22118	267	2									
RABEP1	9135	hgsc.bcm.edu	37	17	5268432	5268432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	5268432	C	A	5268432	3	1	377	1	0	0	0	0	1	0	0	0	12974	796	28	4	1726	4	RABEP1	17	5268432	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08		5268432	75926778	32	22119											
LUC7L3	51747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48818534	48818534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	G	48818534	T	G	48818534	3	3	377	1	0	0	0	0	1	0	0	0	9091	1609	56	5	292	5	LUC7L3	17	48818534	Missense_Mutation	SNP	T	TCGA-BP-4982-01A-01D-1462-08	43550102	48818534	32376676	33	22120											
SETBP1	26040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	42531862	42531862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	42531862	C	A	42531862	3	1	377	1	0	0	0	0	1	0	0	0	14142	796	28	4	2760	4	SETBP1	18	42531862	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08		42531862	35545386	34	22121											
ST8SIA3	51046	broad.mit.edu;ucsc.edu	37	18	55020256	55020256	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	T	55020256	T	T	55020256	3	4	377	1	0	0	0	0	1	0	0	0	15245	1130	39	4	181	4	ST8SIA3	18	55020256	Missense_Mutation	SNP	G	TCGA-BP-4982-01A-01D-1462-08	12488394	55020256	23056992	35	22122											
AZU1	566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	830861	830861	+	Missense_Mutation	SNP	G	G	A	rs145363133		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	830861	G	A	830861	3	1	377	1	0	0	0	0	1	0	0	0	1243	1145	40	1	528	1	AZU1	19	830861	Missense_Mutation	SNP	G	TCGA-BP-4982-01A-01D-1462-08		830861	58298122	36	22123											
ZNF283	284349	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44352476	44352476	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	T	44352476	G	T	44352476	4	4	377	1	0	0	0	0	0	1	0	0	17832	1175	41	4	1737	4	ZNF283	19	44352476	Nonsense_Mutation	SNP	G	TCGA-BP-4982-01A-01D-1462-08	43521615	44352476	14776507	37	22124											
FTL	2512	broad.mit.edu;hgsc.bcm.edu	37	19	49468842	49468842	+	Silent	SNP	G	G	A	rs11553227	alternate_allele	TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	49468842	G	A	49468842	2	1	377	1	0	0	0	0	0	0	0	1	6091	991	35	2		2	FTL	19	49468842	Silent	SNP	G	TCGA-BP-4982-01A-01D-1462-08	5116366	49468842	9660141	38	22125											
PSMF1	9491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	1144992	1144992	+	Silent	SNP	C	C	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	T	1144992	C	T	1144992	2	4	377	1	0	0	0	0	0	0	0	1	12720	610	22	2		2	PSMF1	20	1144992	Silent	SNP	C	TCGA-BP-4982-01A-01D-1462-08		1144992	61880528	39	22126											
BPI	671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	36946865	36946865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	36946865	C	A	36946865	3	1	377	1	0	0	0	0	1	0	0	0	1492	854	30	4	685	4	BPI	20	36946865	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08	35801873	36946865	26078655	40	22127											
KRTAP10-3	386682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	45978577	45978577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	A	45978577	C	A	45978577	3	1	377	1	0	0	0	0	1	0	0	0	8517	536	19	4	647	4	KRTAP10-3	21	45978577	Missense_Mutation	SNP	C	TCGA-BP-4982-01A-01D-1462-08		45978577	2151318	41	22128											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16256120	16256120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	16256120	G	A	16256120	3	1	378	1	0	0	0	0	1	0	0	0	15050	1145	40	1	3427	1	SPEN	1	16256120	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08		16256120	232994501	1	22129											
EPHB2	2048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	23191446	23191446	+	Silent	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	23191446	C	T	23191446	2	4	378	1	0	0	0	0	0	0	0	1	5177	755	27	1		1	EPHB2	1	23191446	Silent	SNP	C	TCGA-BP-4983-01A-01D-1462-08	6935326	23191446	226059175	2	22130											
HIVEP3	59269	broad.mit.edu	37	1	41976454	41976454	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	41976454	A	A	41976454	3	1	378	1	0	0	0	0	1	0	0	0	7195	652	23	4	335	4	HIVEP3	1	41976454	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	18785008	41976454	207274167	3	22131											
PTBP2	58155	broad.mit.edu;ucsc.edu	37	1	97236294	97236294	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	97236294	C	C	97236294	3	2	378	1	0	0	0	0	1	0	0	0	12736	971	34	4	337	4	PTBP2	1	97236294	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	55259840	97236294	152014327	4	22132											
HCN3	57657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155252388	155252388	+	Silent	SNP	T	T	C	rs140564885	alternate_allele	TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	155252388	T	C	155252388	2	2	378	1	0	0	0	0	0	0	0	1	7005	1567	55	3		3	HCN3	1	155252388	Silent	SNP	T	TCGA-BP-4983-01A-01D-1462-08	58016094	155252388	93998233	5	22133											
CADM3	57863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	159170640	159170640	+	Silent	SNP	C	C	T	rs143855176		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	159170640	C	T	159170640	2	4	378	1	0	0	0	0	0	0	0	1	2570	535	19	1		1	CADM3	1	159170640	Silent	SNP	C	TCGA-BP-4983-01A-01D-1462-08	3918252	159170640	90079981	6	22134											
C1orf129	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	170964596	170964596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	170964596	C	T	170964596	3	4	378	1	0	0	0	0	1	0	0	0	1998	623	22	2	1307	2	C1orf129	1	170964596	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	11793956	170964596	78286025	7	22135											
CACNA1E	777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	181549889	181549889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	181549889	G	T	181549889	3	4	378	1	0	0	0	0	1	0	0	0	2544	1000	35	4	950	4	CACNA1E	1	181549889	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	10585293	181549889	67700732	8	22136											
ASPM	259266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197087083	197087083	+	Silent	SNP	A	A	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	197087083	A	G	197087083	2	3	378	1	0	0	0	0	0	0	0	1	1056	98	4	3		3	ASPM	1	197087083	Silent	SNP	A	TCGA-BP-4983-01A-01D-1462-08	15537194	197087083	52163538	9	22137											
GOLT1A	127845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	204170926	204170926	+	Missense_Mutation	SNP	G	G	A	rs150924607	by1000genomes	TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	204170926	G	A	204170926	3	1	378	1	0	0	0	0	1	0	0	0	6577	1145	40	1	279	1	GOLT1A	1	204170926	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	7083843	204170926	45079695	10	22138											
OR2T4	127074	broad.mit.edu;hgsc.bcm.edu	37	1	248525256	248525256	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	248525256	C	A	248525256	4	1	378	1	0	0	0	0	0	1	0	0	11034	838	29	4	376	4	OR2T4	1	248525256	Nonsense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	44354330	248525256	725365	11	22139											
C2orf71	388939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	29295510	29295510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	29295510	T	G	29295510	3	3	378	1	0	0	0	0	1	0	0	0	2193	1493	52	5	2256	5	C2orf71	2	29295510	Missense_Mutation	SNP	T	TCGA-BP-4983-01A-01D-1462-08		29295510	213903863	12	22140											
PCBP1	5093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	70315104	70315104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	70315104	G	T	70315104	3	4	378	1	0	0	0	0	1	0	0	0	11507	1058	37	4	231	4	PCBP1	2	70315104	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	41019594	70315104	172884269	13	22141											
FARP2	9855	hgsc.bcm.edu;ucsc.edu	37	2	242380935	242380935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	242380935	C	A	242380935	3	1	378	1	0	0	0	0	1	0	0	0	5684	595	21	4	1421	4	FARP2	2	242380935	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	172065831	242380935	818438	14	22142											
PDCD6IP	10015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33905544	33905544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	33905544	C	T	33905544	3	4	378	1	0	0	0	0	1	0	0	0	11631	855	30	2	2244	2	PDCD6IP	3	33905544	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08		33905544	164116886	15	22143											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47098412	47098413	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	-	-	-	AT	-	-	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	AT	47098413	-	AT	47098412	7	5	378	1	0	1	1	0	0	0	0	0	14144	1174	41	0	860	0	SETD2	3	47098412	Frame_Shift_Ins	INS	-	TCGA-BP-4983-01A-01D-1462-08	13192868	47098412	150924018	16	22144											
GNAI2	2771	broad.mit.edu;hgsc.bcm.edu	37	3	50290461	50290461	+	Silent	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	50290461	C	T	50290461	2	4	378	1	0	0	0	0	0	0	0	1	6512	535	19	1		1	GNAI2	3	50290461	Silent	SNP	C	TCGA-BP-4983-01A-01D-1462-08	3192049	50290461	147731969	17	22145											
FAM19A1	407738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	68466568	68466568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	68466568	A	G	68466568	3	3	378	1	0	0	0	0	1	0	0	0	5535	333	12	3	263	3	FAM19A1	3	68466568	Missense_Mutation	SNP	A	TCGA-BP-4983-01A-01D-1462-08	18176107	68466568	129555862	18	22146											
MCF2L2	23101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	183035915	183035915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	183035915	T	C	183035915	3	2	378	1	0	0	0	0	1	0	0	0	9387	1609	56	3	2746	3	MCF2L2	3	183035915	Missense_Mutation	SNP	T	TCGA-BP-4983-01A-01D-1462-08	114569347	183035915	14986515	19	22147											
ABCC5	10057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	183669339	183669339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	183669339	G	A	183669339	3	1	378	1	0	0	0	0	1	0	0	0	56	1174	41	2	1523	2	ABCC5	3	183669339	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	633424	183669339	14353091	20	22148											
PDS5A	23244	broad.mit.edu;hgsc.bcm.edu	37	4	39851255	39851255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	39851255	A	G	39851255	3	3	378	1	0	0	0	0	1	0	0	0	11698	72	3	3	937	3	PDS5A	4	39851255	Missense_Mutation	SNP	A	TCGA-BP-4983-01A-01D-1462-08		39851255	151303021	21	22149											
UGT2B7	7364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	69962460	69962460	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	69962460	T	G	69962460	3	3	378	1	0	0	0	0	1	0	0	0	16974	1800	63	5	224	5	UGT2B7	4	69962460	Missense_Mutation	SNP	T	TCGA-BP-4983-01A-01D-1462-08	30111205	69962460	121191816	22	22150											
BANK1	55024	hgsc.bcm.edu;ucsc.edu	37	4	102751231	102751231	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	-	102751231	A	-	102751231	7	5	378	1	0	1	0	1	0	0	0	0	1309	391	14	0	343	0	BANK1	4	102751231	Frame_Shift_Del	DEL	A	TCGA-BP-4983-01A-01D-1462-08	32788771	102751231	88403045	23	22151											
POU4F2	5458	broad.mit.edu	37	4	147560212	147560212	+	Translation_Start_Site	SNP	C	A	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	147560212	A	A	147560212	1	1	378	1	0	0	0	0	0	0	0	0	12286	812	28	4		4	POU4F2	4	147560212	Translation_Start_Site	SNP	C	TCGA-BP-4983-01A-01D-1462-08	44808981	147560212	43594064	24	22152											
TTC29	83894	broad.mit.edu;hgsc.bcm.edu	37	4	147830304	147830304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	147830304	C	T	147830304	3	4	378	1	0	0	0	0	1	0	0	0	16708	855	30	2	1189	2	TTC29	4	147830304	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	270092	147830304	43323972	25	22153											
MUT	4594	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	49419319	49419319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	49419319	T	C	49419319	3	2	378	1	0	0	0	0	1	0	0	0	9998	1725	60	3	1092	3	MUT	6	49419319	Missense_Mutation	SNP	T	TCGA-BP-4983-01A-01D-1462-08		49419319	121695748	26	22154											
PRDM13	59336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	100062550	100062550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	100062550	A	G	100062550	3	3	378	1	0	0	0	0	1	0	0	0	12464	72	3	3	2053	3	PRDM13	6	100062550	Missense_Mutation	SNP	A	TCGA-BP-4983-01A-01D-1462-08	50643231	100062550	71052517	27	22155											
SDK1	221935	broad.mit.edu;hgsc.bcm.edu	37	7	4011189	4011189	+	Silent	SNP	G	G	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	4011189	G	T	4011189	2	4	378	1	0	0	0	0	0	0	0	1	13981	1219	43	4		4	SDK1	7	4011189	Silent	SNP	G	TCGA-BP-4983-01A-01D-1462-08		4011189	155127474	28	22156											
HDAC9	9734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	18625053	18625053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	18625053	C	A	18625053	3	1	378	1	0	0	0	0	1	0	0	0	7021	479	17	4	178	4	HDAC9	7	18625053	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	14613864	18625053	140513610	29	22157											
AMPH	273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	38530710	38530710	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	38530710	T	A	38530710	3	1	378	1	0	0	0	0	1	0	0	0	588	1722	60	5	1819	5	AMPH	7	38530710	Missense_Mutation	SNP	T	TCGA-BP-4983-01A-01D-1462-08	19905657	38530710	120607953	30	22158											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	48314761	48314761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	48314761	G	A	48314761	3	1	378	1	0	0	0	0	1	0	0	0	31	1116	39	1	5393	1	ABCA13	7	48314761	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	9784051	48314761	110823902	31	22159											
DMTF1	9988	broad.mit.edu;hgsc.bcm.edu	37	7	86811528	86811528	+	RNA	SNP	C	C	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	86811528	C	G	86811528	1	3	378	0	1	0	0	0	0	0	0	0	4594	725	25	4		4	DMTF1	7	86811528	RNA	SNP	C	TCGA-BP-4983-01A-01D-1462-08	38496767	86811528	72327135	32	22160											
MOSPD3	64598	broad.mit.edu;hgsc.bcm.edu	37	7	100211116	100211116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	100211116	G	A	100211116	3	1	378	1	0	0	0	0	1	0	0	0	9724	1203	42	2	308	2	MOSPD3	7	100211116	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	13399588	100211116	58927547	33	22161											
MUC17	140453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100681776	100681776	+	Missense_Mutation	SNP	C	C	A	rs143338962	alternate_allele	TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	100681776	C	A	100681776	3	1	378	1	0	0	0	0	1	0	0	0	9981	478	17	4	7089	4	MUC17	7	100681776	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	470660	100681776	58456887	34	22162											
SND1	27044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127341301	127341301	+	Silent	SNP	T	T	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	127341301	T	C	127341301	2	2	378	1	0	0	0	0	0	0	0	1	14857	1403	49	3		3	SND1	7	127341301	Silent	SNP	T	TCGA-BP-4983-01A-01D-1462-08	26659525	127341301	31797362	35	22163											
RBM33	155435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	155537939	155537939	+	Silent	SNP	T	T	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	155537939	T	G	155537939	2	3	378	1	0	0	0	0	0	0	0	1	13143	1770	62	5		5	RBM33	7	155537939	Silent	SNP	T	TCGA-BP-4983-01A-01D-1462-08	28196638	155537939	3600724	36	22164											
IL33	90865	hgsc.bcm.edu	37	9	6256088	6256088	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	6256088	A	T	6256088	3	4	378	1	0	0	0	0	1	0	0	0	7700	362	13	5	759	5	IL33	9	6256088	Missense_Mutation	SNP	A	TCGA-BP-4983-01A-01D-1462-08		6256088	134957343	37	22165											
C9orf93	0	hgsc.bcm.edu	37	9	15744426	15744427	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	15744427	-	G	15744426	7	5	378	1	0	1	1	0	0	0	0	0	2508	1567	55	0	2267	0	C9orf93	9	15744426	Frame_Shift_Ins	INS	-	TCGA-BP-4983-01A-01D-1462-08	9488338	15744426	125469005	38	22166											
KIF12	113220	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	116859632	116859632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	116859632	G	C	116859632	3	2	378	1	0	0	0	0	1	0	0	0	8280	1086	38	4	1412	4	KIF12	9	116859632	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	101115206	116859632	24353799	39	22167											
RABGAP1	23637	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125760994	125760994	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	125760994	G	A	125760994	4	1	378	1	0	0	0	0	0	1	0	0	12977	1212	42	2	1357	2	RABGAP1	9	125760994	Nonsense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	8901362	125760994	15452437	40	22168											
ACBD5	91452	broad.mit.edu	37	10	27529390	27529390	+	Silent	SNP	G	A	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	27529390	A	A	27529390	2	1	378	1	0	0	0	0	0	0	0	1	125	962	34	2		2	ACBD5	10	27529390	Silent	SNP	G	TCGA-BP-4983-01A-01D-1462-08		27529390	108005357	41	22169											
RTKN2	219790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	63958099	63958099	+	Silent	SNP	T	T	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	63958099	T	C	63958099	2	2	378	1	0	0	0	0	0	0	0	1	13736	1635	57	3		3	RTKN2	10	63958099	Silent	SNP	T	TCGA-BP-4983-01A-01D-1462-08	36428709	63958099	71576648	42	22170											
LTBP3	4054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65318874	65318874	+	Silent	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	65318874	G	A	65318874	2	1	378	1	0	0	0	0	0	0	0	1	9082	1130	39	1		1	LTBP3	11	65318874	Silent	SNP	G	TCGA-BP-4983-01A-01D-1462-08		65318874	69687642	43	22171											
XRRA1	143570	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	74555233	74555233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	74555233	A	G	74555233	3	3	378	1	0	0	0	0	1	0	0	0	17473	420	15	3	391	3	XRRA1	11	74555233	Missense_Mutation	SNP	A	TCGA-BP-4983-01A-01D-1462-08	9236359	74555233	60451283	44	22172											
CACNA1C	775	broad.mit.edu	37	12	2800179	2800179	+	Silent	SNP	G	A	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	2800179	A	A	2800179	2	1	378	1	0	0	0	0	0	0	0	1	2542	1103	39	1		1	CACNA1C	12	2800179	Silent	SNP	G	TCGA-BP-4983-01A-01D-1462-08		2800179	131051716	45	22173											
MLF2	8079	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6859423	6859423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	6859423	C	T	6859423	3	4	378	1	0	0	0	0	1	0	0	0	9623	478	17	2	439	2	MLF2	12	6859423	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	4059244	6859423	126992472	46	22174											
LRP1	4035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57600464	57600464	+	Silent	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	57600464	G	A	57600464	2	1	378	1	0	0	0	0	0	0	0	1	8958	1074	38	1		1	LRP1	12	57600464	Silent	SNP	G	TCGA-BP-4983-01A-01D-1462-08	50741041	57600464	76251431	47	22175											
LRRIQ1	84125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	85450294	85450294	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	85450294	A	C	85450294	3	2	378	1	0	0	0	0	1	0	0	0	9036	101	4	5	1749	5	LRRIQ1	12	85450294	Missense_Mutation	SNP	A	TCGA-BP-4983-01A-01D-1462-08	27849830	85450294	48401601	48	22176											
EP400	57634	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	132491323	132491323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	132491323	C	T	132491323	3	4	378	1	0	0	0	0	1	0	0	0	5151	565	20	2	3256	2	EP400	12	132491323	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	47041029	132491323	1360572	49	22177											
RALGAPA1	253959	broad.mit.edu;hgsc.bcm.edu	37	14	36096963	36096963	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	36096963	G	A	36096963	4	1	378	1	0	0	0	0	0	1	0	0	13026	1357	47	2	1623	2	RALGAPA1	14	36096963	Nonsense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08		36096963	71252577	50	22178											
NIN	51199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	51259502	51259502	+	Silent	SNP	A	A	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	51259502	A	C	51259502	2	2	378	1	0	0	0	0	0	0	0	1	10424	175	7	5		5	NIN	14	51259502	Silent	SNP	A	TCGA-BP-4983-01A-01D-1462-08	15162539	51259502	56090038	51	22179											
ATG2B	55102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	96789061	96789061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	96789061	T	C	96789061	3	2	378	1	0	0	0	0	1	0	0	0	1094	1841	64	3	3788	3	ATG2B	14	96789061	Missense_Mutation	SNP	T	TCGA-BP-4983-01A-01D-1462-08	45529559	96789061	10560479	52	22180											
HERC2	8924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	28501377	28501377	+	Silent	SNP	C	C	T	rs139718674	by1000genomes	TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	28501377	C	T	28501377	2	4	378	1	0	0	0	0	0	0	0	1	7065	639	23	1		1	HERC2	15	28501377	Silent	SNP	C	TCGA-BP-4983-01A-01D-1462-08		28501377	74030015	53	22181											
RYR3	6263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	33988670	33988670	+	Silent	SNP	T	T	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	33988670	T	C	33988670	2	2	378	1	0	0	0	0	0	0	0	1	13783	1722	60	3		3	RYR3	15	33988670	Silent	SNP	T	TCGA-BP-4983-01A-01D-1462-08	5487293	33988670	68542722	54	22182											
PLCB2	5330	broad.mit.edu;hgsc.bcm.edu	37	15	40594520	40594520	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	40594520	T	A	40594520	4	1	378	1	0	0	0	0	0	1	0	0	12035	1821	63	5	3266	5	PLCB2	15	40594520	Nonsense_Mutation	SNP	T	TCGA-BP-4983-01A-01D-1462-08	6605850	40594520	61936872	55	22183											
DENND4A	10260	broad.mit.edu;hgsc.bcm.edu	37	15	65954291	65954291	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	65954291	A	C	65954291	3	2	378	1	0	0	0	0	1	0	0	0	4435	330	12	5	105	5	DENND4A	15	65954291	Missense_Mutation	SNP	A	TCGA-BP-4983-01A-01D-1462-08	25359771	65954291	36577101	56	22184											
ACAN	176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89382103	89382103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	89382103	G	A	89382103	3	1	378	1	0	0	0	0	1	0	0	0	117	1145	40	1	286	1	ACAN	15	89382103	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	23427812	89382103	13149289	57	22185											
TPSAB1	7177	broad.mit.edu;hgsc.bcm.edu	37	16	1291647	1291647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	1291647	T	C	1291647	3	2	378	1	0	0	0	0	1	0	0	0	16435	1783	62	3	456	3	TPSAB1	16	1291647	Missense_Mutation	SNP	T	TCGA-BP-4983-01A-01D-1462-08		1291647	89063106	58	22186											
TRAF7	84231	broad.mit.edu;ucsc.edu	37	16	2225568	2225568	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	2225568	A	A	2225568	3	1	378	1	0	0	0	0	1	0	0	0	16458	1116	39	1	1633	1	TRAF7	16	2225568	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	933921	2225568	88129185	59	22187											
ZZEF1	23140	broad.mit.edu	37	17	3984690	3984690	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	3984690	T	T	3984690	3	4	378	1	0	0	0	0	1	0	0	0	18267	536	19	1	6228	1	ZZEF1	17	3984690	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08		3984690	77210520	60	22188											
C17orf66	256957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34190111	34190111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	G	34190111	A	G	34190111	3	3	378	1	0	0	0	0	1	0	0	0	1876	159	6	3	1100	3	C17orf66	17	34190111	Missense_Mutation	SNP	A	TCGA-BP-4983-01A-01D-1462-08	30205421	34190111	47005099	61	22189											
CHAD	1101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48545894	48545894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	48545894	G	A	48545894	3	1	378	1	0	0	0	0	1	0	0	0	3312	1203	42	2	810	2	CHAD	17	48545894	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	14355783	48545894	32649316	62	22190											
MRC2	9902	broad.mit.edu	37	17	60743545	60743545	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	60743545	T	T	60743545	3	4	378	1	0	0	0	0	1	0	0	0	9765	536	19	1	621	1	MRC2	17	60743545	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	12197651	60743545	20451665	63	22191											
CD79B	974	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62009607	62009607	+	Silent	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	62009607	C	T	62009607	2	4	378	1	0	0	0	0	0	0	0	1	3039	523	19	1		1	CD79B	17	62009607	Silent	SNP	C	TCGA-BP-4983-01A-01D-1462-08	1266062	62009607	19185603	64	22192											
SLC38A10	124565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	79220707	79220707	+	Silent	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	79220707	G	A	79220707	2	1	378	1	0	0	0	0	0	0	0	1	14615	1136	40	1		1	SLC38A10	17	79220707	Silent	SNP	G	TCGA-BP-4983-01A-01D-1462-08	17211100	79220707	1974503	65	22193											
ELP2	55250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	33750159	33750159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	33750159	G	T	33750159	3	4	378	1	0	0	0	0	1	0	0	0	5082	1130	39	4	2288	4	ELP2	18	33750159	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08		33750159	44327089	66	22194											
CDH20	28316	broad.mit.edu;hgsc.bcm.edu	37	18	59195205	59195205	+	Silent	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	59195205	G	A	59195205	2	1	378	1	0	0	0	0	0	0	0	1	3108	1277	45	2		2	CDH20	18	59195205	Silent	SNP	G	TCGA-BP-4983-01A-01D-1462-08	25445046	59195205	18882043	67	22195											
CYP2B6	1555	broad.mit.edu;hgsc.bcm.edu	37	19	41515984	41515984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	41515984	C	T	41515984	3	4	378	1	0	0	0	0	1	0	0	0	4166	507	18	2	930	2	CYP2B6	19	41515984	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08		41515984	17612999	68	22196											
ASXL1	171023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31023504	31023504	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	31023504	G	T	31023504	4	4	378	1	0	0	0	0	0	1	0	0	1066	1291	45	4	3045	4	ASXL1	20	31023504	Nonsense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08		31023504	32002016	69	22197											
LPIN3	64900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39987126	39987126	+	Silent	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	39987126	C	T	39987126	2	4	378	1	0	0	0	0	0	0	0	1	8927	825	29	2		2	LPIN3	20	39987126	Silent	SNP	C	TCGA-BP-4983-01A-01D-1462-08	8963622	39987126	23038394	70	22198											
ZMYND8	23613	broad.mit.edu;hgsc.bcm.edu	37	20	45927547	45927547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	45927547	G	T	45927547	3	4	378	1	0	0	0	0	1	0	0	0	17723	1174	41	4	3267	4	ZMYND8	20	45927547	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	5940421	45927547	17097973	71	22199											
GCFC1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34117899	34117899	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	C	34117899	A	C	34117899	3	2	378	1	0	0	0	0	1	0	0	0	6296	72	3	5	845	5	GCFC1	21	34117899	Missense_Mutation	SNP	A	TCGA-BP-4983-01A-01D-1462-08		34117899	14011996	72	22200											
OSBP2	23762	broad.mit.edu	37	22	31091334	31091334	+	Silent	SNP	G	A	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	31091334	A	A	31091334	2	1	378	1	0	0	0	0	0	0	0	1	11281	1132	40	1		1	OSBP2	22	31091334	Silent	SNP	G	TCGA-BP-4983-01A-01D-1462-08		31091334	20213232	73	22201											
TUBGCP6	85378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50660936	50660936	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	50660936	G	A	50660936	4	1	378	1	0	0	0	0	0	1	0	0	16782	1124	39	1	3151	1	TUBGCP6	22	50660936	Nonsense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	19569602	50660936	643630	74	22202											
GPR174	84636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	78426732	78426732	+	Silent	SNP	C	C	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	78426732	C	A	78426732	2	1	378	1	0	0	0	0	0	0	0	1	6679	903	32	4		4	GPR174	23	78426732	Silent	SNP	C	TCGA-BP-4983-01A-01D-1462-08		78426732	76843828	75	22203											
CYLC1	1538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	83128044	83128044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	T	83128044	C	T	83128044	3	4	378	1	0	0	0	0	1	0	0	0	4143	913	32	2	342	2	CYLC1	23	83128044	Missense_Mutation	SNP	C	TCGA-BP-4983-01A-01D-1462-08	4701312	83128044	72142516	76	22204											
L1CAM	3897	broad.mit.edu	37	X	153130647	153130647	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4983-01A-01D-1462-08	TCGA-BP-4983-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	beaafdf9-d5c0-4bc4-b08b-833c3c91c9ae	b50f962c-326f-4b05-a0a2-76015c7e84b2	A	153130647	A	A	153130647	3	1	378	1	0	0	0	0	1	0	0	0	8595	1087	38	1	1037	1	L1CAM	23	153130647	Missense_Mutation	SNP	G	TCGA-BP-4983-01A-01D-1462-08	70002603	153130647	2139913	77	22205											
GUCA2A	2980	hgsc.bcm.edu;ucsc.edu	37	1	42629119	42629119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	42629119	G	A	42629119	3	1	379	1	0	0	0	0	1	0	0	0	6898	1203	42	2	117	2	GUCA2A	1	42629119	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08		42629119	206621502	1	22206											
C1orf175	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55166858	55166858	+	Silent	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	55166858	C	T	55166858	2	4	379	1	0	0	0	0	0	0	0	1	2018	680	24	2		2	C1orf175	1	55166858	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08	12537739	55166858	194083763	2	22207											
OLFM3	118427	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	102302569	102302569	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	102302569	G	C	102302569	3	2	379	1	0	0	0	0	1	0	0	0	10861	1174	41	4	1314	4	OLFM3	1	102302569	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	47135711	102302569	146948052	3	22208											
AHCYL1	10768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110553967	110553967	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	110553967	A	C	110553967	3	2	379	1	0	0	0	0	1	0	0	0	410	333	12	5	374	5	AHCYL1	1	110553967	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08	8251398	110553967	138696654	4	22209											
TMCO1	54499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	165712544	165712544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	165712544	C	T	165712544	3	4	379	1	0	0	0	0	1	0	0	0	16007	826	29	2	246	2	TMCO1	1	165712544	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	55158577	165712544	83538077	5	22210											
TOR1AIP2	163590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	179833916	179833916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	179833916	C	A	179833916	3	1	379	1	0	0	0	0	1	0	0	0	16385	808	28	4	1432	4	TOR1AIP2	1	179833916	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	14121372	179833916	69416705	6	22211											
APOBEC4	403314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183617328	183617328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	183617328	C	A	183617328	3	1	379	1	0	0	0	0	1	0	0	0	796	478	17	4	518	4	APOBEC4	1	183617328	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	3783412	183617328	65633293	7	22212											
C1orf26	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	185259906	185259906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	185259906	T	C	185259906	3	2	379	1	0	0	0	0	1	0	0	0	2037	1696	59	3	2744	3	C1orf26	1	185259906	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	1642578	185259906	63990715	8	22213											
OR2T8	343172	broad.mit.edu	37	1	248084574	248084574	+	Silent	SNP	C	A	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	248084574	A	A	248084574	2	1	379	1	0	0	0	0	0	0	0	1	11037	639	23	4		4	OR2T8	1	248084574	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08	62824668	248084574	1166047	9	22214											
OR2T33	391195	broad.mit.edu;hgsc.bcm.edu	37	1	248436862	248436862	+	Silent	SNP	G	G	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	248436862	G	T	248436862	2	4	379	1	0	0	0	0	0	0	0	1	11031	1103	39	4		4	OR2T33	1	248436862	Silent	SNP	G	TCGA-BP-4985-01A-01D-1462-08	352288	248436862	813759	10	22215											
HNRPLL	92906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	38797055	38797055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	38797055	T	C	38797055	3	2	379	1	0	0	0	0	1	0	0	0	7284	1792	62	3	543	3	HNRPLL	2	38797055	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08		38797055	204402318	11	22216											
SOS1	6654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	39250293	39250293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	39250293	G	T	39250293	3	4	379	1	0	0	0	0	1	0	0	0	14949	1299	45	4	2781	4	SOS1	2	39250293	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	453238	39250293	203949080	12	22217											
FAM136A	84908	broad.mit.edu;hgsc.bcm.edu	37	2	70529085	70529085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	70529085	A	T	70529085	3	4	379	1	0	0	0	0	1	0	0	0	5454	188	7	5	369	5	FAM136A	2	70529085	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08	31278792	70529085	172670288	13	22218											
CTNNA2	1496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	80874879	80874879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	80874879	C	A	80874879	3	1	379	1	0	0	0	0	1	0	0	0	4015	623	22	4	2458	4	CTNNA2	2	80874879	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	10345794	80874879	162324494	14	22219											
RANBP2	5903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	109379898	109379898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	109379898	A	G	109379898	3	3	379	1	0	0	0	0	1	0	0	0	13041	188	7	3	2981	3	RANBP2	2	109379898	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08	28505019	109379898	133819475	15	22220											
RIF1	55183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152318926	152318926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	152318926	G	T	152318926	3	4	379	1	0	0	0	0	1	0	0	0	13372	1246	43	4	3419	4	RIF1	2	152318926	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	42939028	152318926	90880447	16	22221	268	2									
RIF1	55183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152318927	152318927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	152318927	G	A	152318927	3	1	379	1	0	0	0	0	1	0	0	0	13372	1188	41	2	3420	2	RIF1	2	152318927	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	1	152318927	90880446	17	22222	268	2									
TM4SF20	79853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228228665	228228665	+	Silent	SNP	A	A	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	228228665	A	T	228228665	2	4	379	1	0	0	0	0	0	0	0	1	15981	175	7	5		5	TM4SF20	2	228228665	Silent	SNP	A	TCGA-BP-4985-01A-01D-1462-08	75909738	228228665	14970708	18	22223											
IQCA1	79781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	237300665	237300665	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	237300665	T	G	237300665	3	3	379	1	0	0	0	0	1	0	0	0	7809	1667	58	5	1137	5	IQCA1	2	237300665	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	9072000	237300665	5898708	19	22224											
CLASP2	23122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33648252	33648252	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	33648252	T	C	33648252	5	2	379	1	0	0	0	0	0	0	1	0	3457	1594	55	3	3087	3	CLASP2	3	33648252	Splice_Site	SNP	T	TCGA-BP-4985-01A-01D-1462-08		33648252	164374178	20	22225											
MAP4	4134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47912403	47912403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	47912403	A	T	47912403	3	4	379	1	0	0	0	0	1	0	0	0	9265	304	11	5	878	5	MAP4	3	47912403	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08	14264151	47912403	150110027	21	22226											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52623110	52623110	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	52623110	C	A	52623110	4	1	379	1	0	0	0	0	0	1	0	0	11498	835	29	4	2011	4	PBRM1	3	52623110	Nonsense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	4710707	52623110	145399320	22	22227											
PARP14	54625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	122433220	122433220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	122433220	T	C	122433220	3	2	379	1	0	0	0	0	1	0	0	0	11465	1821	63	3	3990	3	PARP14	3	122433220	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	69810110	122433220	75589210	23	22228											
IL1RAP	3556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	190366339	190366339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	190366339	G	A	190366339	3	1	379	1	0	0	0	0	1	0	0	0	7667	1261	44	2	1616	2	IL1RAP	3	190366339	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	67933119	190366339	7656091	24	22229											
ATP13A3	79572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	194177901	194177901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	194177901	C	T	194177901	3	4	379	1	0	0	0	0	1	0	0	0	1125	855	30	2	3306	2	ATP13A3	3	194177901	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	3811562	194177901	3844529	25	22230											
ZNF141	7700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	367443	367443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	367443	G	A	367443	3	1	379	1	0	0	0	0	1	0	0	0	17742	1116	39	1	1231	1	ZNF141	4	367443	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08		367443	190786833	26	22231											
HTT	3064	broad.mit.edu;ucsc.edu	37	4	3208562	3208562	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	3208562	T	T	3208562	3	4	379	1	0	0	0	0	1	0	0	0	7464	1319	46	4	6101	4	HTT	4	3208562	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	2841119	3208562	187945714	27	22232											
GABRG1	2565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	46060386	46060386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	46060386	C	T	46060386	3	4	379	1	0	0	0	0	1	0	0	0	6178	637	22	2	645	2	GABRG1	4	46060386	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	42851824	46060386	145093890	28	22233											
UGT2B7	7364	hgsc.bcm.edu;ucsc.edu	37	4	69962480	69962483	+	Frame_Shift_Del	DEL	TAAC	TAAC	-	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	TAAC	TAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	-	69962483	TAAC	-	69962480	7	5	379	1	0	1	0	1	0	0	0	0	16974	1764	61	0	244	0	UGT2B7	4	69962480	Frame_Shift_Del	DEL	TAAC	TCGA-BP-4985-01A-01D-1462-08	23902094	69962480	121191796	29	22234											
AGXT2L1	64850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	109669293	109669293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	109669293	C	G	109669293	3	3	379	1	0	0	0	0	1	0	0	0	406	478	17	4	569	4	AGXT2L1	4	109669293	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	39706813	109669293	81484983	30	22235											
C4orf27	54969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	170663225	170663225	+	Silent	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	170663225	C	T	170663225	2	4	379	1	0	0	0	0	0	0	0	1	2260	639	23	1		1	C4orf27	4	170663225	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08	60993932	170663225	20491051	31	22236											
C5orf42	65250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	37165738	37165738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	37165738	T	C	37165738	3	2	379	1	0	0	0	0	1	0	0	0	2303	1841	64	3	2225	3	C5orf42	5	37165738	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08		37165738	143749522	32	22237											
ATG12	9140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	115177263	115177263	+	RNA	SNP	A	A	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	115177263	A	T	115177263	1	4	379	0	1	0	0	0	0	0	0	0	1090	174	6	5		5	ATG12	5	115177263	RNA	SNP	A	TCGA-BP-4985-01A-01D-1462-08	78011525	115177263	65737997	33	22238											
PCDHB11	56125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140579545	140579545	+	Silent	SNP	G	G	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	140579545	G	C	140579545	2	2	379	1	0	0	0	0	0	0	0	1	11543	1335	47	4		4	PCDHB11	5	140579545	Silent	SNP	G	TCGA-BP-4985-01A-01D-1462-08	25402282	140579545	40335715	34	22239											
LARS	51520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	145524053	145524053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	145524053	C	T	145524053	3	4	379	1	0	0	0	0	1	0	0	0	8641	710	25	2	1957	2	LARS	5	145524053	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	4944508	145524053	35391207	35	22240											
TNXB	7148	broad.mit.edu;hgsc.bcm.edu	37	6	32047063	32047063	+	Silent	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	32047063	G	A	32047063	2	1	379	1	0	0	0	0	0	0	0	1	16358	1161	41	2		2	TNXB	6	32047063	Silent	SNP	G	TCGA-BP-4985-01A-01D-1462-08		32047063	139068004	36	22241											
TCTE1	202500	broad.mit.edu;hgsc.bcm.edu	37	6	44255550	44255550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	44255550	C	T	44255550	3	4	379	1	0	0	0	0	1	0	0	0	15729	536	19	1	1508	1	TCTE1	6	44255550	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	12208487	44255550	126859517	37	22242											
ELOVL4	6785	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	80635976	80635976	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	80635976	T	A	80635976	3	1	379	1	0	0	0	0	1	0	0	0	5078	1435	50	5	741	5	ELOVL4	6	80635976	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	36380426	80635976	90479091	38	22243											
IBTK	25998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	82925803	82925803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	82925803	G	A	82925803	3	1	379	1	0	0	0	0	1	0	0	0	7483	1174	41	2	2546	2	IBTK	6	82925803	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	2289827	82925803	88189264	39	22244											
TAB2	23118	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	149691195	149691195	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	149691195	C	G	149691195	3	3	379	1	0	0	0	0	1	0	0	0	15508	681	24	4	64	4	TAB2	6	149691195	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	66765392	149691195	21423872	40	22245											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu	37	7	48312183	48312183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	48312183	G	A	48312183	3	1	379	1	0	0	0	0	1	0	0	0	31	1291	45	2	2815	2	ABCA13	7	48312183	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08		48312183	110826480	41	22246											
SEMA3D	223117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	84694820	84694820	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	84694820	G	C	84694820	3	2	379	1	0	0	0	0	1	0	0	0	14040	1029	36	4	1743	4	SEMA3D	7	84694820	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	36382637	84694820	74443843	42	22247											
IQUB	154865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	123142671	123142671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	123142671	G	A	123142671	3	1	379	1	0	0	0	0	1	0	0	0	7827	1348	47	2	1404	2	IQUB	7	123142671	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	38447851	123142671	35995992	43	22248											
WASL	8976	broad.mit.edu;ucsc.edu	37	7	123346339	123346339	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	123346339	G	G	123346339	3	3	379	1	0	0	0	0	1	0	0	0	17268	681	24	4	1121	4	WASL	7	123346339	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	203668	123346339	35792324	44	22249											
ZC3HAV1	56829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	138764442	138764442	+	Silent	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	138764442	G	A	138764442	2	1	379	1	0	0	0	0	0	0	0	1	17587	1306	46	2		2	ZC3HAV1	7	138764442	Silent	SNP	G	TCGA-BP-4985-01A-01D-1462-08	15418103	138764442	20374221	45	22250											
TAS2R38	5726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	141672669	141672669	+	Missense_Mutation	SNP	C	C	T	rs139085046	byfrequency	TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	141672669	C	T	141672669	3	4	379	1	0	0	0	0	1	0	0	0	15587	768	27	1	184	1	TAS2R38	7	141672669	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	2908227	141672669	17465994	46	22251											
IDO1	3620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	39775606	39775606	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	39775606	G	A	39775606	5	1	379	1	0	0	0	0	0	0	1	0	7508	1043	36	2	193	2	IDO1	8	39775606	Splice_Site	SNP	G	TCGA-BP-4985-01A-01D-1462-08		39775606	106588416	47	22252											
SLC7A13	157724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	87242198	87242198	+	Silent	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	87242198	C	T	87242198	2	4	379	1	0	0	0	0	0	0	0	1	14708	581	21	2		2	SLC7A13	8	87242198	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08	47466592	87242198	59121824	48	22253											
VPS13B	157680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	100533198	100533198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	100533198	A	C	100533198	3	2	379	1	0	0	0	0	1	0	0	0	17202	130	5	5	5088	5	VPS13B	8	100533198	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08	13291000	100533198	45830824	49	22254											
PLEC	5339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144995815	144995815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	144995815	G	A	144995815	3	1	379	1	0	0	0	0	1	0	0	0	12059	1145	40	1	5473	1	PLEC	8	144995815	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	44462617	144995815	1368207	50	22255											
KIAA1984	84960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139701099	139701099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	139701099	T	C	139701099	3	2	379	1	0	0	0	0	1	0	0	0	8273	1464	51	3	1295	3	KIAA1984	9	139701099	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08		139701099	1512332	51	22256											
ALOX5	240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	45935891	45935891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	45935891	C	T	45935891	3	4	379	1	0	0	0	0	1	0	0	0	540	652	23	1	1025	1	ALOX5	10	45935891	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08		45935891	89598856	52	22257											
MYPN	84665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	69881502	69881502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	69881502	G	C	69881502	3	2	379	1	0	0	0	0	1	0	0	0	10105	1290	45	4	309	4	MYPN	10	69881502	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	23945611	69881502	65653245	53	22258											
TET1	80312	hgsc.bcm.edu;ucsc.edu	37	10	70451380	70451382	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	-	70451382	AAG	-	70451380	7	5	379	1	0	1	0	1	0	0	0	0	15781	363	13	0	6262	0	TET1	10	70451380	In_Frame_Del	DEL	AAG	TCGA-BP-4985-01A-01D-1462-08	569878	70451380	65083367	54	22259											
PLAC9	219348	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	81904026	81904026	+	Silent	SNP	G	G	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	81904026	G	C	81904026	2	2	379	1	0	0	0	0	0	0	0	1	12024	1306	46	4		4	PLAC9	10	81904026	Silent	SNP	G	TCGA-BP-4985-01A-01D-1462-08	11452646	81904026	53630721	55	22260											
MYOF	26509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	95148802	95148802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	95148802	C	A	95148802	3	1	379	1	0	0	0	0	1	0	0	0	10096	796	28	4	4767	4	MYOF	10	95148802	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	13244776	95148802	40385945	56	22261											
DOCK1	1793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	129202630	129202630	+	Silent	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	129202630	C	T	129202630	2	4	379	1	0	0	0	0	0	0	0	1	4686	816	29	2		2	DOCK1	10	129202630	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08	34053828	129202630	6332117	57	22262											
SCUBE2	57758	broad.mit.edu;ucsc.edu	37	11	9048918	9048918	+	Silent	SNP	C	A	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	9048918	A	A	9048918	2	1	379	1	0	0	0	0	0	0	0	1	13958	842	30	4		4	SCUBE2	11	9048918	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08		9048918	125957598	58	22263											
AHNAK	79026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62300776	62300776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	62300776	C	A	62300776	3	1	379	1	0	0	0	0	1	0	0	0	414	680	24	4	16679	4	AHNAK	11	62300776	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	53251858	62300776	72705740	59	22264											
PCNXL3	399909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65386188	65386188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	65386188	G	A	65386188	3	1	379	1	0	0	0	0	1	0	0	0	11600	1319	46	2	1377	2	PCNXL3	11	65386188	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	3085412	65386188	69620328	60	22265											
C11orf1	64776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111754535	111754535	+	Silent	SNP	T	T	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	111754535	T	C	111754535	2	2	379	1	0	0	0	0	0	0	0	1	1631	1567	55	3		3	C11orf1	11	111754535	Silent	SNP	T	TCGA-BP-4985-01A-01D-1462-08	46368347	111754535	23251981	61	22266											
TREH	11181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118531943	118531943	+	Silent	SNP	G	G	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	118531943	G	A	118531943	2	1	379	1	0	0	0	0	0	0	0	1	16481	1368	48	2		2	TREH	11	118531943	Silent	SNP	G	TCGA-BP-4985-01A-01D-1462-08	6777408	118531943	16474573	62	22267											
CLSTN3	9746	hgsc.bcm.edu;ucsc.edu	37	12	7295471	7295472	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	7295472	-	T	7295471	7	5	379	1	0	1	1	0	0	0	0	0	3565	681	24	0	1589	0	CLSTN3	12	7295471	Frame_Shift_Ins	INS	-	TCGA-BP-4985-01A-01D-1462-08		7295471	126556424	63	22268											
A2ML1	144568	broad.mit.edu;hgsc.bcm.edu	37	12	8995734	8995734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	8995734	A	G	8995734	3	3	379	1	0	0	0	0	1	0	0	0	5	72	3	3	1299	3	A2ML1	12	8995734	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08	1700263	8995734	124856161	64	22269											
ALG10B	144245	broad.mit.edu;ucsc.edu	37	12	38710783	38710783	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	38710783	T	T	38710783	3	4	379	1	0	0	0	0	1	0	0	0	512	1203	42	4	90	4	ALG10B	12	38710783	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	29715049	38710783	95141112	65	22270											
C12orf64	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	80752068	80752068	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	80752068	T	A	80752068	3	1	379	1	0	0	0	0	1	0	0	0	1709	1461	51	5	6227	5	C12orf64	12	80752068	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	42041285	80752068	53099827	66	22271											
TMTC2	160335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	83290181	83290181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	83290181	C	G	83290181	3	3	379	1	0	0	0	0	1	0	0	0	16273	912	32	4	1249	4	TMTC2	12	83290181	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	2538113	83290181	50561714	67	22272											
IRS2	8660	broad.mit.edu;hgsc.bcm.edu	37	13	110437883	110437883	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	110437883	C	G	110437883	3	3	379	1	0	0	0	0	1	0	0	0	7848	739	26	4	3506	4	IRS2	13	110437883	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08		110437883	4731995	68	22273											
DCAF11	80344	broad.mit.edu;hgsc.bcm.edu	37	14	24590705	24590705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	24590705	T	A	24590705	3	1	379	1	0	0	0	0	1	0	0	0	4264	1580	55	5	1424	5	DCAF11	14	24590705	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08		24590705	82758835	69	22274											
RIPK3	11035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24808452	24808452	+	Silent	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	24808452	C	T	24808452	2	4	379	1	0	0	0	0	0	0	0	1	13395	912	32	2		2	RIPK3	14	24808452	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08	217747	24808452	82541088	70	22275											
AQR	9716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	35196564	35196564	+	Silent	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	35196564	C	T	35196564	2	4	379	1	0	0	0	0	0	0	0	1	835	854	30	2		2	AQR	15	35196564	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08		35196564	67334828	71	22276											
DISP2	85455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40662245	40662245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	40662245	A	C	40662245	3	2	379	1	0	0	0	0	1	0	0	0	4542	333	12	5	3962	5	DISP2	15	40662245	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08	5465681	40662245	61869147	72	22277											
RCN2	5955	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	77241529	77241529	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	77241529	T	G	77241529	3	3	379	1	0	0	0	0	1	0	0	0	13193	1551	54	5	946	5	RCN2	15	77241529	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	36579284	77241529	25289863	73	22278											
C15orf58	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90785079	90785079	+	Silent	SNP	G	G	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	90785079	G	T	90785079	2	4	379	1	0	0	0	0	0	0	0	1	1808	1364	48	4		4	C15orf58	15	90785079	Silent	SNP	G	TCGA-BP-4985-01A-01D-1462-08	13543550	90785079	11746313	74	22279											
GRIN2A	2903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	9943692	9943692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	9943692	C	T	9943692	3	4	379	1	0	0	0	0	1	0	0	0	6786	536	19	1	3181	1	GRIN2A	16	9943692	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08		9943692	80411061	75	22280											
DNAH2	146754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7681680	7681680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	7681680	A	G	7681680	3	3	379	1	0	0	0	0	1	0	0	0	4604	275	10	3	5568	3	DNAH2	17	7681680	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08		7681680	73513530	76	22281											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11593618	11593618	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	11593618	G	C	11593618	3	2	379	1	0	0	0	0	1	0	0	0	4610	991	35	4	4557	4	DNAH9	17	11593618	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08	3911938	11593618	69601592	77	22282											
MPRIP	23164	broad.mit.edu;hgsc.bcm.edu	37	17	17078669	17078669	+	Silent	SNP	C	C	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	17078669	C	A	17078669	2	1	379	1	0	0	0	0	0	0	0	1	9750	755	27	4		4	MPRIP	17	17078669	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08	5485051	17078669	64116541	78	22283											
PHF12	57649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27233901	27233901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	27233901	T	A	27233901	3	1	379	1	0	0	0	0	1	0	0	0	11830	1406	49	5	369	5	PHF12	17	27233901	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	10155232	27233901	53961309	79	22284											
FZD2	2535	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42636502	42636502	+	Silent	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	42636502	C	T	42636502	2	4	379	1	0	0	0	0	0	0	0	1	6137	547	19	1		1	FZD2	17	42636502	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08	15402601	42636502	38558708	80	22285											
VEZF1	7716	broad.mit.edu;hgsc.bcm.edu	37	17	56058037	56058037	+	Silent	SNP	G	G	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	56058037	G	T	56058037	2	4	379	1	0	0	0	0	0	0	0	1	17167	1280	45	4		4	VEZF1	17	56058037	Silent	SNP	G	TCGA-BP-4985-01A-01D-1462-08	13421535	56058037	25137173	81	22286											
LLGL2	3993	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73565078	73565078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	73565078	C	T	73565078	3	4	379	1	0	0	0	0	1	0	0	0	8841	759	27	1	1423	1	LLGL2	17	73565078	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	17507041	73565078	7630132	82	22287											
DTNA	1837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	32409025	32409025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	32409025	G	T	32409025	3	4	379	1	0	0	0	0	1	0	0	0	4790	1174	41	4	1157	4	DTNA	18	32409025	Missense_Mutation	SNP	G	TCGA-BP-4985-01A-01D-1462-08		32409025	45668223	83	22288											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9067640	9067640	+	Silent	SNP	A	A	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	9067640	A	G	9067640	2	3	379	1	0	0	0	0	0	0	0	1	9980	175	7	3		3	MUC16	19	9067640	Silent	SNP	A	TCGA-BP-4985-01A-01D-1462-08		9067640	50061343	84	22289											
TYK2	7297	broad.mit.edu;hgsc.bcm.edu	37	19	10476537	10476537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	10476537	T	C	10476537	3	2	379	1	0	0	0	0	1	0	0	0	16822	1406	49	3	2972	3	TYK2	19	10476537	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	1408897	10476537	48652446	85	22290											
POLR2I	5438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36605736	36605736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	A	36605736	T	A	36605736	3	1	379	1	0	0	0	0	1	0	0	0	12229	1551	54	5	378	5	POLR2I	19	36605736	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	26129199	36605736	22523247	86	22291											
PTOV1	53635	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50358129	50358129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	50358129	T	C	50358129	3	2	379	1	0	0	0	0	1	0	0	0	12780	1435	50	3	448	3	PTOV1	19	50358129	Missense_Mutation	SNP	T	TCGA-BP-4985-01A-01D-1462-08	13752393	50358129	8770854	87	22292											
ZNF665	79788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53668435	53668435	+	Silent	SNP	G	G	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	53668435	G	T	53668435	2	4	379	1	0	0	0	0	0	0	0	1	18085	1306	46	4		4	ZNF665	19	53668435	Silent	SNP	G	TCGA-BP-4985-01A-01D-1462-08	3310306	53668435	5460548	88	22293											
SLC4A11	83959	broad.mit.edu;ucsc.edu	37	20	3211240	3211240	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	3211240	G	G	3211240	3	3	379	1	0	0	0	0	1	0	0	0	14665	217	8	3	1327	3	SLC4A11	20	3211240	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08		3211240	59814280	89	22294											
DOPEY2	9980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37603371	37603371	+	Silent	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	37603371	C	T	37603371	2	4	379	1	0	0	0	0	0	0	0	1	4710	854	30	2		2	DOPEY2	21	37603371	Silent	SNP	C	TCGA-BP-4985-01A-01D-1462-08		37603371	10526524	90	22295											
ZNF295	0	broad.mit.edu;hgsc.bcm.edu	37	21	43413025	43413025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	43413025	C	T	43413025	3	4	379	1	0	0	0	0	1	0	0	0	17839	797	28	2	2024	2	ZNF295	21	43413025	Missense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	5809654	43413025	4716870	91	22296											
MAPK8IP2	23542	broad.mit.edu	37	22	51042064	51042064	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	C	51042064	C	C	51042064	3	2	379	1	0	0	0	0	1	0	0	0	9292	14	1	5	561	5	MAPK8IP2	22	51042064	Missense_Mutation	SNP	A	TCGA-BP-4985-01A-01D-1462-08		51042064	262502	92	22297											
SLC6A14	11254	hgsc.bcm.edu	37	X	115572174	115572175	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	G	115572175	-	G	115572174	7	5	379	1	0	1	1	0	0	0	0	0	14690	1567	55	0	265	0	SLC6A14	23	115572174	Frame_Shift_Ins	INS	-	TCGA-BP-4985-01A-01D-1462-08		115572174	39698386	93	22298											
STAG2	10735	broad.mit.edu;hgsc.bcm.edu	37	X	123197044	123197044	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4985-01A-01D-1462-08	TCGA-BP-4985-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	e56acfea-aec6-4102-8fe0-25df396c10ae	3c2a1dd1-1800-482c-97c6-a20e014864c2	T	123197044	C	T	123197044	4	4	379	1	0	0	0	0	0	1	0	0	15255	528	19	1	1876	1	STAG2	23	123197044	Nonsense_Mutation	SNP	C	TCGA-BP-4985-01A-01D-1462-08	7624870	123197044	32073516	94	22299											
ATAD3A	55210	broad.mit.edu;ucsc.edu	37	1	1459280	1459280	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	1459280	A	A	1459280	3	1	380	1	0	0	0	0	1	0	0	0	1073	1087	38	1	1207	1	ATAD3A	1	1459280	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08		1459280	247791341	1	22300											
KLHDC7A	127707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	18807868	18807868	+	Silent	SNP	G	G	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	18807868	G	A	18807868	2	1	380	1	0	0	0	0	0	0	0	1	8367	1103	39	1		1	KLHDC7A	1	18807868	Silent	SNP	G	TCGA-BP-4986-01A-01D-1462-08	17348588	18807868	230442753	2	22301											
PIGC	5279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	172411549	172411549	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	T	172411549	A	T	172411549	3	4	380	1	0	0	0	0	1	0	0	0	11893	188	7	5	683	5	PIGC	1	172411549	Missense_Mutation	SNP	A	TCGA-BP-4986-01A-01D-1462-08	153603681	172411549	76839072	3	22302											
NCF2	4688	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183532672	183532672	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	183532672	T	A	183532672	4	1	380	1	0	0	0	0	0	1	0	0	10224	1821	63	5	521	5	NCF2	1	183532672	Nonsense_Mutation	SNP	T	TCGA-BP-4986-01A-01D-1462-08	11121123	183532672	65717949	4	22303											
DEGS1	8560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	224377767	224377767	+	Missense_Mutation	SNP	G	G	A	rs188450448	by1000genomes	TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	224377767	G	A	224377767	3	1	380	1	0	0	0	0	1	0	0	0	4424	1145	40	1	577	1	DEGS1	1	224377767	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08	40845095	224377767	24872854	5	22304											
OR2T10	127069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	248756885	248756885	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	C	248756885	A	C	248756885	3	2	380	1	0	0	0	0	1	0	0	0	11024	14	1	5	756	5	OR2T10	1	248756885	Missense_Mutation	SNP	A	TCGA-BP-4986-01A-01D-1462-08	24379118	248756885	493736	6	22305											
CAD	790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27457500	27457500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	27457500	G	A	27457500	3	1	380	1	0	0	0	0	1	0	0	0	2567	1175	41	2	3823	2	CAD	2	27457500	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08		27457500	215741873	7	22306											
PRKCE	5581	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	45879259	45879259	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	45879259	T	A	45879259	3	1	380	1	0	0	0	0	1	0	0	0	12521	1609	56	5	22	5	PRKCE	2	45879259	Missense_Mutation	SNP	T	TCGA-BP-4986-01A-01D-1462-08	18421759	45879259	197320114	8	22307											
VPS54	51542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	64160992	64160992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	C	64160992	T	C	64160992	3	2	380	1	0	0	0	0	1	0	0	0	17228	1744	61	3	1427	3	VPS54	2	64160992	Missense_Mutation	SNP	T	TCGA-BP-4986-01A-01D-1462-08	18281733	64160992	179038381	9	22308											
STEAP3	55240	hgsc.bcm.edu	37	2	120003082	120003090	+	In_Frame_Del	DEL	GAGATGGAC	GAGATGGAC	-	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	GAGATGGAC	GAGATGGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	-	120003090	GAGATGGAC	-	120003082	7	5	380	1	0	1	0	1	0	0	0	0	15291	943	33	0	46	0	STEAP3	2	120003082	In_Frame_Del	DEL	GAGATGGAC	TCGA-BP-4986-01A-01D-1462-08	55842090	120003082	123196291	10	22309											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179664360	179664360	+	Silent	SNP	C	C	T	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	T	179664360	C	T	179664360	2	4	380	1	0	0	0	0	0	0	0	1	16747	854	30	2		2	TTN	2	179664360	Silent	SNP	C	TCGA-BP-4986-01A-01D-1462-08	59661278	179664360	63535013	11	22310											
VHL	7428	hgsc.bcm.edu	37	3	10188262	10188262	+	Missense_Mutation	SNP	A	A	T	rs119103278	alternate_allele	TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	T	10188262	A	T	10188262	3	4	380	1	0	0	0	0	1	0	0	0	17174	446	16	5	411	5	VHL	3	10188262	Missense_Mutation	SNP	A	TCGA-BP-4986-01A-01D-1462-08		10188262	187834168	12	22311											
EPHA5	2044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	66213782	66213782	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	C	66213782	G	C	66213782	3	2	380	1	0	0	0	0	1	0	0	0	5172	1261	44	4	481	4	EPHA5	4	66213782	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08		66213782	124940494	13	22312											
ENAM	10117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71510239	71510239	+	Silent	SNP	C	C	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	71510239	C	A	71510239	2	1	380	1	0	0	0	0	0	0	0	1	5114	697	25	4		4	ENAM	4	71510239	Silent	SNP	C	TCGA-BP-4986-01A-01D-1462-08	5296457	71510239	119644037	14	22313											
F11	2160	broad.mit.edu;hgsc.bcm.edu	37	4	187208887	187208887	+	Silent	SNP	C	C	T	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	T	187208887	C	T	187208887	2	4	380	1	0	0	0	0	0	0	0	1	5339	535	19	1		1	F11	4	187208887	Silent	SNP	C	TCGA-BP-4986-01A-01D-1462-08	115698648	187208887	3945389	15	22314											
PAIP1	10605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	43555964	43555964	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	T	43555964	A	T	43555964	3	4	380	1	0	0	0	0	1	0	0	0	11403	101	4	5	1076	5	PAIP1	5	43555964	Missense_Mutation	SNP	A	TCGA-BP-4986-01A-01D-1462-08		43555964	137359296	16	22315											
PCDHA9	9752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140230078	140230078	+	Silent	SNP	G	G	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	140230078	G	A	140230078	2	1	380	1	0	0	0	0	0	0	0	1	11538	1335	47	2		2	PCDHA9	5	140230078	Silent	SNP	G	TCGA-BP-4986-01A-01D-1462-08	96674114	140230078	40685182	17	22316											
SLC25A2	83884	broad.mit.edu;ucsc.edu	37	5	140682821	140682821	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	G	140682821	G	G	140682821	3	3	380	1	0	0	0	0	1	0	0	0	14495	1606	56	5	297	5	SLC25A2	5	140682821	Missense_Mutation	SNP	T	TCGA-BP-4986-01A-01D-1462-08	452743	140682821	40232439	18	22317											
NKAPL	222698	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28227271	28227271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	T	28227271	C	T	28227271	3	4	380	1	0	0	0	0	1	0	0	0	10447	855	30	2	124	2	NKAPL	6	28227271	Missense_Mutation	SNP	C	TCGA-BP-4986-01A-01D-1462-08		28227271	142887796	19	22318											
BRD2	6046	broad.mit.edu;hgsc.bcm.edu	37	6	32943251	32943251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	G	32943251	A	G	32943251	3	3	380	1	0	0	0	0	1	0	0	0	1504	449	16	3	434	3	BRD2	6	32943251	Missense_Mutation	SNP	A	TCGA-BP-4986-01A-01D-1462-08	4715980	32943251	138171816	20	22319											
KIAA1009	22832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	84894950	84894950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	C	84894950	T	C	84894950	3	2	380	1	0	0	0	0	1	0	0	0	8210	1821	63	3	2653	3	KIAA1009	6	84894950	Missense_Mutation	SNP	T	TCGA-BP-4986-01A-01D-1462-08	51951699	84894950	86220117	21	22320											
PNPLA8	50640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	108155092	108155092	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	C	108155092	A	C	108155092	3	2	380	1	0	0	0	0	1	0	0	0	12178	246	9	5	1540	5	PNPLA8	7	108155092	Missense_Mutation	SNP	A	TCGA-BP-4986-01A-01D-1462-08		108155092	50983571	22	22321											
PLEC	5339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145007369	145007369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	145007369	G	A	145007369	3	1	380	1	0	0	0	0	1	0	0	0	12059	1116	39	1	12309	1	PLEC	8	145007369	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08		145007369	1356653	23	22322											
IL2RA	3559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	6054846	6054846	+	Silent	SNP	T	T	G	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	G	6054846	T	G	6054846	2	3	380	1	0	0	0	0	0	0	0	1	7693	1617	56	5		5	IL2RA	10	6054846	Silent	SNP	T	TCGA-BP-4986-01A-01D-1462-08		6054846	129479901	24	22323											
ITIH5	80760	hgsc.bcm.edu	37	10	7608335	7608336	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	G	7608336	-	G	7608335	7	5	380	1	0	1	1	0	0	0	0	0	7914	768	27	0	693	0	ITIH5	10	7608335	Frame_Shift_Ins	INS	-	TCGA-BP-4986-01A-01D-1462-08	1553489	7608335	127926412	25	22324											
CHUK	1147	hgsc.bcm.edu;ucsc.edu	37	10	101961883	101961883	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	-	101961883	A	-	101961883	7	5	380	1	0	1	0	1	0	0	0	0	3418	217	8	0	738	0	CHUK	10	101961883	Frame_Shift_Del	DEL	A	TCGA-BP-4986-01A-01D-1462-08	94353548	101961883	33572864	26	22325											
B4GALNT4	338707	broad.mit.edu	37	11	379656	379656	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	T	379656	T	T	379656	3	4	380	1	0	0	0	0	1	0	0	0	1269	768	27	1	2501	1	B4GALNT4	11	379656	Missense_Mutation	SNP	C	TCGA-BP-4986-01A-01D-1462-08		379656	134626860	27	22326											
FREM2	341640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	39451280	39451280	+	Silent	SNP	T	T	C	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	C	39451280	T	C	39451280	2	2	380	1	0	0	0	0	0	0	0	1	6052	1751	61	3		3	FREM2	13	39451280	Silent	SNP	T	TCGA-BP-4986-01A-01D-1462-08		39451280	75718598	28	22327											
MGA	23269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42035185	42035185	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	G	42035185	C	G	42035185	3	3	380	1	0	0	0	0	1	0	0	0	9547	681	24	4	5081	4	MGA	15	42035185	Missense_Mutation	SNP	C	TCGA-BP-4986-01A-01D-1462-08		42035185	60496207	29	22328											
MYO1E	4643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59506883	59506883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	G	59506883	A	G	59506883	3	3	380	1	0	0	0	0	1	0	0	0	10079	449	16	3	2254	3	MYO1E	15	59506883	Missense_Mutation	SNP	A	TCGA-BP-4986-01A-01D-1462-08	17471698	59506883	43024509	30	22329											
NGRN	51335	hgsc.bcm.edu;ucsc.edu	37	15	90815002	90815005	+	Frame_Shift_Del	DEL	CTTC	CTTC	-	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	CTTC	CTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	-	90815005	CTTC	-	90815002	7	5	380	1	0	1	0	1	0	0	0	0	10406	564	20	0	868	0	NGRN	15	90815002	Frame_Shift_Del	DEL	CTTC	TCGA-BP-4986-01A-01D-1462-08	31308119	90815002	11716390	31	22330			1	43		2	2	13	N	CTTC_A	1.666828e-05
NGRN	51335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90815014	90815014	+	Silent	SNP	A	A	G	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	G	90815014	A	G	90815014	2	3	380	1	0	0	0	0	0	0	0	1	10406	243	9	3		3	NGRN	15	90815014	Silent	SNP	A	TCGA-BP-4986-01A-01D-1462-08	12	90815014	11716378	32	22331			1	43		2	2	13	N	CTTC_A	1.666828e-05
SPNS3	201305	broad.mit.edu	37	17	4381896	4381896	+	Silent	SNP	G	C	C	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	C	4381896	C	C	4381896	2	2	380	1	0	0	0	0	0	0	0	1	15088	1364	48	4		4	SPNS3	17	4381896	Silent	SNP	G	TCGA-BP-4986-01A-01D-1462-08		4381896	76813314	33	22332											
KCNJ12	3768	broad.mit.edu	37	17	21319528	21319528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	21319528	A	A	21319528	3	1	380	1	0	0	0	0	1	0	0	0	8053	1058	37	1	876	1	KCNJ12	17	21319528	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08	16937632	21319528	59875682	34	22333											
TBC1D16	125058	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	77926601	77926601	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	G	77926601	C	G	77926601	3	3	380	1	0	0	0	0	1	0	0	0	15617	884	31	4	1543	4	TBC1D16	17	77926601	Missense_Mutation	SNP	C	TCGA-BP-4986-01A-01D-1462-08	56607073	77926601	3268609	35	22334											
EPS15L1	58513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	16536069	16536069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	16536069	G	A	16536069	3	1	380	1	0	0	0	0	1	0	0	0	5195	1116	39	1	2037	1	EPS15L1	19	16536069	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08		16536069	42592914	36	22335											
ATP4A	495	broad.mit.edu	37	19	36046428	36046428	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	G	36046428	G	G	36046428	3	3	380	1	0	0	0	0	1	0	0	0	1145	893	31	4	1072	4	ATP4A	19	36046428	Missense_Mutation	SNP	C	TCGA-BP-4986-01A-01D-1462-08	19510359	36046428	23082555	37	22336											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38985048	38985048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	38985048	G	A	38985048	3	1	380	1	0	0	0	0	1	0	0	0	13781	1145	40	1	6485	1	RYR1	19	38985048	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08	2938620	38985048	20143935	38	22337											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu	37	19	39008218	39008218	+	Missense_Mutation	SNP	C	C	A	rs139289204		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	39008218	C	A	39008218	3	1	380	1	0	0	0	0	1	0	0	0	13781	594	21	4	10167	4	RYR1	19	39008218	Missense_Mutation	SNP	C	TCGA-BP-4986-01A-01D-1462-08	23170	39008218	20120765	39	22338											
ZNF234	10780	broad.mit.edu;ucsc.edu	37	19	44660625	44660625	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	C	44660625	C	C	44660625	3	2	380	1	0	0	0	0	1	0	0	0	17799	1020	36	4	470	4	ZNF234	19	44660625	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08	5652407	44660625	14468358	40	22339											
ZNF473	25888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50549932	50549932	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	C	50549932	G	C	50549932	3	2	380	1	0	0	0	0	1	0	0	0	17943	962	34	4	2246	4	ZNF473	19	50549932	Missense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08	5889307	50549932	8579051	41	22340											
POLD1	5424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50905747	50905747	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	A	50905747	G	A	50905747	4	1	380	1	0	0	0	0	0	1	0	0	12197	1212	42	2	817	2	POLD1	19	50905747	Nonsense_Mutation	SNP	G	TCGA-BP-4986-01A-01D-1462-08	355815	50905747	8223236	42	22341											
NF2	4771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30032866	30032867	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BP-4986-01A-01D-1462-08	TCGA-BP-4986-11A-01D-1462-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4465171a-d048-4078-b1ae-021b2c635ff4	2ed78cfb-2ff0-4682-9c25-21174a4e4853	-	30032867	GT	-	30032866	7	5	380	1	0	1	0	1	0	0	0	0	10364	1275	44	0	247	0	NF2	22	30032866	Frame_Shift_Del	DEL	GT	TCGA-BP-4986-01A-01D-1462-08		30032866	21271700	43	22342											
JAK1	3716	hgsc.bcm.edu;ucsc.edu	37	1	65310524	65310524	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	-	65310524	G	-	65310524	7	5	381	1	0	1	0	1	0	0	0	0	7944	991	35	0	1340	0	JAK1	1	65310524	Frame_Shift_Del	DEL	G	TCGA-BP-4987-01A-01D-1462-08		65310524	183940097	1	22343											
GBP6	163351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	89847441	89847441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	A	89847441	G	A	89847441	3	1	381	1	0	0	0	0	1	0	0	0	6285	1174	41	2	1082	2	GBP6	1	89847441	Missense_Mutation	SNP	G	TCGA-BP-4987-01A-01D-1462-08	24536917	89847441	159403180	2	22344											
CLK2	1196	hgsc.bcm.edu;ucsc.edu	37	1	155240724	155240729	+	In_Frame_Del	DEL	CCGGCT	CCGGCT	-	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	CCGGCT	CCGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	-	155240729	CCGGCT	-	155240724	7	5	381	1	0	1	0	1	0	0	0	0	3539	610	22	0	1499	0	CLK2	1	155240724	In_Frame_Del	DEL	CCGGCT	TCGA-BP-4987-01A-01D-1462-08	65393283	155240724	94009897	3	22345											
SPAST	6683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32323916	32323916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	G	32323916	A	G	32323916	3	3	381	1	0	0	0	0	1	0	0	0	15009	101	4	3	652	3	SPAST	2	32323916	Missense_Mutation	SNP	A	TCGA-BP-4987-01A-01D-1462-08		32323916	210875457	4	22346											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52712580	52712580	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	A	52712580	G	A	52712580	4	1	381	1	0	0	0	0	0	1	0	0	11498	1124	39	1	4844	1	PBRM1	3	52712580	Nonsense_Mutation	SNP	G	TCGA-BP-4987-01A-01D-1462-08		52712580	145309850	5	22347											
GOLGB1	2804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121415221	121415221	+	Silent	SNP	T	T	C	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	C	121415221	T	C	121415221	2	2	381	1	0	0	0	0	0	0	0	1	6572	1722	60	3		3	GOLGB1	3	121415221	Silent	SNP	T	TCGA-BP-4987-01A-01D-1462-08	68702641	121415221	76607209	6	22348											
PPARGC1A	10891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	23833232	23833232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	T	23833232	G	T	23833232	3	4	381	1	0	0	0	0	1	0	0	0	12307	1174	41	4	2063	4	PPARGC1A	4	23833232	Missense_Mutation	SNP	G	TCGA-BP-4987-01A-01D-1462-08		23833232	167321044	7	22349											
GRID2	2895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	94376877	94376877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	T	94376877	C	T	94376877	3	4	381	1	0	0	0	0	1	0	0	0	6779	536	19	1	1652	1	GRID2	4	94376877	Missense_Mutation	SNP	C	TCGA-BP-4987-01A-01D-1462-08	70543645	94376877	96777399	8	22350											
PPP2R2B	5521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	146077636	146077636	+	Silent	SNP	G	G	A	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	A	146077636	G	A	146077636	2	1	381	1	0	0	0	0	0	0	0	1	12395	1049	37	1		1	PPP2R2B	5	146077636	Silent	SNP	G	TCGA-BP-4987-01A-01D-1462-08		146077636	34837624	9	22351											
PKD1L1	168507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	47897277	47897277	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	C	47897277	G	C	47897277	3	2	381	1	0	0	0	0	1	0	0	0	11971	1386	48	4	4153	4	PKD1L1	7	47897277	Missense_Mutation	SNP	G	TCGA-BP-4987-01A-01D-1462-08		47897277	111241386	10	22352											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113243821	113243821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	A	113243821	C	A	113243821	3	1	381	1	0	0	0	0	1	0	0	0	3948	855	30	4	354	4	CSMD3	8	113243821	Missense_Mutation	SNP	C	TCGA-BP-4987-01A-01D-1462-08		113243821	33120201	11	22353											
IFNA8	3445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	21409486	21409486	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	A	21409486	T	A	21409486	3	1	381	1	0	0	0	0	1	0	0	0	7550	1609	56	5	313	5	IFNA8	9	21409486	Missense_Mutation	SNP	T	TCGA-BP-4987-01A-01D-1462-08		21409486	119803945	12	22354											
INPPL1	3636	hgsc.bcm.edu;ucsc.edu	37	11	71939276	71939278	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	-	71939278	AGA	-	71939276	7	5	381	1	0	1	0	1	0	0	0	0	7768	291	11	0	231	0	INPPL1	11	71939276	In_Frame_Del	DEL	AGA	TCGA-BP-4987-01A-01D-1462-08		71939276	63067240	13	22355											
RIC8B	55188	hgsc.bcm.edu;ucsc.edu	37	12	107254049	107254053	+	Frame_Shift_Del	DEL	ATAGT	ATAGT	-	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	ATAGT	ATAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	-	107254053	ATAGT	-	107254049	7	5	381	1	0	1	0	1	0	0	0	0	13369	333	12	0	1340	0	RIC8B	12	107254049	Frame_Shift_Del	DEL	ATAGT	TCGA-BP-4987-01A-01D-1462-08		107254049	26597846	14	22356											
NOC4L	79050	broad.mit.edu	37	12	132633361	132633361	+	Silent	SNP	G	T	T	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	T	132633361	T	T	132633361	2	4	381	1	0	0	0	0	0	0	0	1	10522	1277	45	4		4	NOC4L	12	132633361	Silent	SNP	G	TCGA-BP-4987-01A-01D-1462-08	25379312	132633361	1218534	15	22357											
ATP7B	540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	52539025	52539025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	C	52539025	T	C	52539025	3	2	381	1	0	0	0	0	1	0	0	0	1191	1406	49	3	2613	3	ATP7B	13	52539025	Missense_Mutation	SNP	T	TCGA-BP-4987-01A-01D-1462-08		52539025	62630853	16	22358											
RPGRIP1	57096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21771589	21771589	+	Silent	SNP	C	C	T	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	T	21771589	C	T	21771589	2	4	381	1	0	0	0	0	0	0	0	1	13562	709	25	2		2	RPGRIP1	14	21771589	Silent	SNP	C	TCGA-BP-4987-01A-01D-1462-08		21771589	85577951	17	22359											
SYNE2	23224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64447732	64447732	+	Silent	SNP	G	G	A	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	A	64447732	G	A	64447732	2	1	381	1	0	0	0	0	0	0	0	1	15458	1020	36	2		2	SYNE2	14	64447732	Silent	SNP	G	TCGA-BP-4987-01A-01D-1462-08	42676143	64447732	42901808	18	22360											
ITGB3	3690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	45377874	45377874	+	Silent	SNP	G	G	C	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	C	45377874	G	C	45377874	2	2	381	1	0	0	0	0	0	0	0	1	7902	1219	43	4		4	ITGB3	17	45377874	Silent	SNP	G	TCGA-BP-4987-01A-01D-1462-08		45377874	35817336	19	22361											
STAP2	55620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4325497	4325497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	T	4325497	G	T	4325497	3	4	381	1	0	0	0	0	1	0	0	0	15265	942	33	4	490	4	STAP2	19	4325497	Missense_Mutation	SNP	G	TCGA-BP-4987-01A-01D-1462-08		4325497	54803486	20	22362											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38985140	38985140	+	Silent	SNP	G	G	A	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	A	38985140	G	A	38985140	2	1	381	1	0	0	0	0	0	0	0	1	13781	1132	40	1		1	RYR1	19	38985140	Silent	SNP	G	TCGA-BP-4987-01A-01D-1462-08	34659643	38985140	20143843	21	22363											
DEFB123	245936	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30037860	30037860	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	A	30037860	T	A	30037860	4	1	381	1	0	0	0	0	0	1	0	0	4411	1471	51	5	93	5	DEFB123	20	30037860	Nonsense_Mutation	SNP	T	TCGA-BP-4987-01A-01D-1462-08		30037860	32987660	22	22364											
PI4KA	5297	broad.mit.edu;hgsc.bcm.edu	37	22	21104191	21104191	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	G	21104191	A	G	21104191	5	3	381	1	0	0	0	0	0	0	1	0	11880	405	14	3	3175	3	PI4KA	22	21104191	Splice_Site	SNP	A	TCGA-BP-4987-01A-01D-1462-08		21104191	30200375	23	22365											
SHROOM4	57477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	50376678	50376678	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	A	50376678	T	A	50376678	3	1	381	1	0	0	0	0	1	0	0	0	14309	1667	58	5	2110	5	SHROOM4	23	50376678	Missense_Mutation	SNP	T	TCGA-BP-4987-01A-01D-1462-08		50376678	104893882	24	22366											
MED12	9968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	70342188	70342188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4987-01A-01D-1462-08	TCGA-BP-4987-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7924f8ff-8e78-4910-9dc5-db14d5ee7011	10d7ba85-b3b5-4a53-a686-70be8848a041	G	70342188	A	G	70342188	3	3	381	1	0	0	0	0	1	0	0	0	9435	159	6	3	1270	3	MED12	23	70342188	Missense_Mutation	SNP	A	TCGA-BP-4987-01A-01D-1462-08	19965510	70342188	84928372	25	22367											
DNAJC11	55735	broad.mit.edu;ucsc.edu	37	1	6741001	6741001	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	6741001	A	A	6741001	4	1	382	1	0	0	0	0	0	1	0	0	4632	1153	40	1	1570	1	DNAJC11	1	6741001	Nonsense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08		6741001	242509620	1	22368											
KIAA2013	90231	hgsc.bcm.edu	37	1	11985493	11985494	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	-	11985494	TC	-	11985493	7	5	382	1	0	1	0	1	0	0	0	0	8274	1792	62	0	1114	0	KIAA2013	1	11985493	Frame_Shift_Del	DEL	TC	TCGA-BP-4988-01A-01D-1462-08	5244492	11985493	237265128	2	22369											
CYP4X1	260293	broad.mit.edu;ucsc.edu	37	1	47498916	47498916	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	47498916	C	C	47498916	3	2	382	1	0	0	0	0	1	0	0	0	4195	14	1	5	382	5	CYP4X1	1	47498916	Missense_Mutation	SNP	A	TCGA-BP-4988-01A-01D-1462-08	35513423	47498916	201751705	3	22370											
RALGPS2	55103	broad.mit.edu	37	1	178753614	178753614	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	178753614	A	A	178753614	3	1	382	1	0	0	0	0	1	0	0	0	13031	797	28	4	125	4	RALGPS2	1	178753614	Missense_Mutation	SNP	C	TCGA-BP-4988-01A-01D-1462-08	131254698	178753614	70497007	4	22371											
SCCPDH	51097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	246923346	246923346	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	T	246923346	A	T	246923346	3	4	382	1	0	0	0	0	1	0	0	0	13898	295	11	5	931	5	SCCPDH	1	246923346	Missense_Mutation	SNP	A	TCGA-BP-4988-01A-01D-1462-08	68169732	246923346	2327275	5	22372											
USP34	9736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61571006	61571006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	61571006	T	C	61571006	3	2	382	1	0	0	0	0	1	0	0	0	17077	1696	59	3	8456	3	USP34	2	61571006	Missense_Mutation	SNP	T	TCGA-BP-4988-01A-01D-1462-08		61571006	181628367	6	22373											
LCT	3938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	136566891	136566891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	T	136566891	G	T	136566891	3	4	382	1	0	0	0	0	1	0	0	0	8700	1319	46	4	2797	4	LCT	2	136566891	Missense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08	74995885	136566891	106632482	7	22374											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170060531	170060531	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	170060531	C	A	170060531	4	1	382	1	0	0	0	0	0	1	0	0	8963	835	29	4	6153	4	LRP2	2	170060531	Nonsense_Mutation	SNP	C	TCGA-BP-4988-01A-01D-1462-08	33493640	170060531	73138842	8	22375											
CNTN6	27255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	1363473	1363473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	G	1363473	A	G	1363473	3	3	382	1	0	0	0	0	1	0	0	0	3647	130	5	3	927	3	CNTN6	3	1363473	Missense_Mutation	SNP	A	TCGA-BP-4988-01A-01D-1462-08		1363473	196658957	9	22376											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191480	10191480	+	Missense_Mutation	SNP	T	T	C	rs121913346	alternate_allele	TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	10191480	T	C	10191480	3	2	382	1	0	0	0	0	1	0	0	0	17174	1580	55	3	483	3	VHL	3	10191480	Missense_Mutation	SNP	T	TCGA-BP-4988-01A-01D-1462-08	8828007	10191480	187830950	10	22377	269	2									
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191481	10191481	+	Silent	SNP	G	G	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	10191481	G	C	10191481	2	2	382	1	0	0	0	0	0	0	0	1	17174	1277	45	4		4	VHL	3	10191481	Silent	SNP	G	TCGA-BP-4988-01A-01D-1462-08	1	10191481	187830949	11	22378	269	2									
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643348	52643348	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	52643348	G	A	52643348	4	1	382	1	0	0	0	0	0	1	0	0	11498	1153	40	1	2412	1	PBRM1	3	52643348	Nonsense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08	42451867	52643348	145379082	12	22379											
CHRD	8646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184102984	184102984	+	Silent	SNP	G	G	T	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	T	184102984	G	T	184102984	2	4	382	1	0	0	0	0	0	0	0	1	3374	1074	38	4		4	CHRD	3	184102984	Silent	SNP	G	TCGA-BP-4988-01A-01D-1462-08	131459636	184102984	13919446	13	22380											
ATP13A4	84239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	193188727	193188727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	193188727	C	A	193188727	3	1	382	1	0	0	0	0	1	0	0	0	1126	825	29	4	2814	4	ATP13A4	3	193188727	Missense_Mutation	SNP	C	TCGA-BP-4988-01A-01D-1462-08	9085743	193188727	4833703	14	22381											
LETM1	3954	hgsc.bcm.edu	37	4	1823987	1823988	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	1823988	-	C	1823987	7	5	382	1	0	1	1	0	0	0	0	0	8741	1551	54	0	710	0	LETM1	4	1823987	Frame_Shift_Ins	INS	-	TCGA-BP-4988-01A-01D-1462-08		1823987	189330289	15	22382											
BOD1L	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	13605133	13605133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	T	13605133	C	T	13605133	3	4	382	1	0	0	0	0	1	0	0	0	1483	478	17	2	5832	2	BOD1L	4	13605133	Missense_Mutation	SNP	C	TCGA-BP-4988-01A-01D-1462-08	11781146	13605133	177549143	16	22383											
GABRB1	2560	broad.mit.edu;ucsc.edu	37	4	47033947	47033947	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	47033947	C	C	47033947	3	2	382	1	0	0	0	0	1	0	0	0	6173	130	5	5	103	5	GABRB1	4	47033947	Missense_Mutation	SNP	A	TCGA-BP-4988-01A-01D-1462-08	33428814	47033947	144120329	17	22384											
UGT2A1	10941	broad.mit.edu	37	4	70455274	70455274	+	Missense_Mutation	SNP	C	T	T	rs150861593	byfrequency	TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	T	70455274	T	T	70455274	3	4	382	1	0	0	0	0	1	0	0	0	16965	768	27	1	187	1	UGT2A1	4	70455274	Missense_Mutation	SNP	C	TCGA-BP-4988-01A-01D-1462-08	23421327	70455274	120699002	18	22385											
PCDH10	57575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	134071487	134071487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	134071487	A	C	134071487	3	2	382	1	0	0	0	0	1	0	0	0	11514	417	15	5	194	5	PCDH10	4	134071487	Missense_Mutation	SNP	A	TCGA-BP-4988-01A-01D-1462-08	63616213	134071487	57082789	19	22386											
ST8SIA4	7903	hgsc.bcm.edu;ucsc.edu	37	5	100147701	100147701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	-	100147701	T	-	100147701	7	5	382	1	0	1	0	1	0	0	0	0	15246	1606	56	0	153	0	ST8SIA4	5	100147701	Frame_Shift_Del	DEL	T	TCGA-BP-4988-01A-01D-1462-08		100147701	80767559	20	22387											
CSNK1G3	1456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	122911473	122911473	+	Silent	SNP	A	A	G	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	G	122911473	A	G	122911473	2	3	382	1	0	0	0	0	0	0	0	1	3958	349	13	3		3	CSNK1G3	5	122911473	Silent	SNP	A	TCGA-BP-4988-01A-01D-1462-08	22763772	122911473	58003787	21	22388											
NSD1	64324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176637818	176637818	+	Silent	SNP	A	A	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	176637818	A	C	176637818	2	2	382	1	0	0	0	0	0	0	0	1	10676	352	13	5		5	NSD1	5	176637818	Silent	SNP	A	TCGA-BP-4988-01A-01D-1462-08	53726345	176637818	4277442	22	22389											
BAI3	577	broad.mit.edu	37	6	69349081	69349081	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	69349081	C	C	69349081	3	2	382	1	0	0	0	0	1	0	0	0	1300	1464	51	3	516	3	BAI3	6	69349081	Missense_Mutation	SNP	T	TCGA-BP-4988-01A-01D-1462-08		69349081	101765986	23	22390											
KIAA0146	23514	broad.mit.edu;ucsc.edu	37	8	48309113	48309113	+	Silent	SNP	T	C	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	48309113	C	C	48309113	2	2	382	1	0	0	0	0	0	0	0	1	8164	1838	64	3		3	KIAA0146	8	48309113	Silent	SNP	T	TCGA-BP-4988-01A-01D-1462-08		48309113	98054909	24	22391											
DCAF4L2	138009	broad.mit.edu;ucsc.edu	37	8	88885732	88885732	+	Silent	SNP	G	A	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	88885732	A	A	88885732	2	1	382	1	0	0	0	0	0	0	0	1	4274	1103	39	1		1	DCAF4L2	8	88885732	Silent	SNP	G	TCGA-BP-4988-01A-01D-1462-08	40576619	88885732	57478290	25	22392											
TRAPPC9	83696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	141415691	141415691	+	Silent	SNP	A	A	G	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	G	141415691	A	G	141415691	2	3	382	1	0	0	0	0	0	0	0	1	16477	10	1	3		3	TRAPPC9	8	141415691	Silent	SNP	A	TCGA-BP-4988-01A-01D-1462-08	52529959	141415691	4948331	26	22393											
NUP214	8021	broad.mit.edu;hgsc.bcm.edu	37	9	134077067	134077067	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	134077067	G	C	134077067	3	2	382	1	0	0	0	0	1	0	0	0	10769	1261	44	4	5673	4	NUP214	9	134077067	Missense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08		134077067	7136364	27	22394											
TRIM6	117854	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5624933	5624933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	G	5624933	T	G	5624933	3	3	382	1	0	0	0	0	1	0	0	0	16545	1725	60	5	481	5	TRIM6	11	5624933	Missense_Mutation	SNP	T	TCGA-BP-4988-01A-01D-1462-08		5624933	129381583	28	22395											
OR56A5	390084	broad.mit.edu	37	11	5988973	5988973	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	G	5988973	G	G	5988973	3	3	382	1	0	0	0	0	1	0	0	0	11143	333	12	3	191	3	OR56A5	11	5988973	Missense_Mutation	SNP	A	TCGA-BP-4988-01A-01D-1462-08	364040	5988973	129017543	29	22396											
GLS2	27165	broad.mit.edu	37	12	56865561	56865561	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	56865561	A	A	56865561	3	1	382	1	0	0	0	0	1	0	0	0	6471	855	30	4	168	4	GLS2	12	56865561	Missense_Mutation	SNP	C	TCGA-BP-4988-01A-01D-1462-08		56865561	76986334	30	22397											
GCN1L1	10985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	120586152	120586152	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	120586152	T	C	120586152	5	2	382	1	0	0	0	0	0	0	1	0	6306	1594	55	3	3558	3	GCN1L1	12	120586152	Splice_Site	SNP	T	TCGA-BP-4988-01A-01D-1462-08	63720591	120586152	13265743	31	22398											
RNF219	79596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	79212988	79212988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	G	79212988	T	G	79212988	3	3	382	1	0	0	0	0	1	0	0	0	13495	1606	56	5	1673	5	RNF219	13	79212988	Missense_Mutation	SNP	T	TCGA-BP-4988-01A-01D-1462-08		79212988	35956890	32	22399											
ACIN1	22985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23533399	23533399	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	C	23533399	G	C	23533399	3	2	382	1	0	0	0	0	1	0	0	0	142	942	33	4	1373	4	ACIN1	14	23533399	Missense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08		23533399	83816141	33	22400											
THSD4	79875	broad.mit.edu;ucsc.edu	37	15	72039333	72039333	+	Silent	SNP	C	T	T	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	T	72039333	T	T	72039333	2	4	382	1	0	0	0	0	0	0	0	1	15890	747	26	2		2	THSD4	15	72039333	Silent	SNP	C	TCGA-BP-4988-01A-01D-1462-08		72039333	30492059	34	22401											
ANKS4B	257629	broad.mit.edu;ucsc.edu	37	16	21261470	21261470	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	21261470	A	A	21261470	3	1	382	1	0	0	0	0	1	0	0	0	691	1116	39	1	589	1	ANKS4B	16	21261470	Missense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08		21261470	69093283	35	22402											
XYLT2	64132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48433278	48433278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	48433278	G	A	48433278	3	1	382	1	0	0	0	0	1	0	0	0	17476	1377	48	2	1247	2	XYLT2	17	48433278	Missense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08		48433278	32761932	36	22403											
ITGB4	3691	broad.mit.edu;hgsc.bcm.edu	37	17	73729634	73729634	+	Silent	SNP	G	G	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	73729634	G	A	73729634	2	1	382	1	0	0	0	0	0	0	0	1	7904	991	35	2		2	ITGB4	17	73729634	Silent	SNP	G	TCGA-BP-4988-01A-01D-1462-08	25296356	73729634	7465576	37	22404											
SEC14L1	6397	broad.mit.edu	37	17	75209464	75209464	+	Silent	SNP	C	T	T	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	T	75209464	T	T	75209464	2	4	382	1	0	0	0	0	0	0	0	1	13994	776	27	1		1	SEC14L1	17	75209464	Silent	SNP	C	TCGA-BP-4988-01A-01D-1462-08	1479830	75209464	5985746	38	22405											
CTDP1	9150	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	77477938	77477938	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	T	77477938	A	T	77477938	3	4	382	1	0	0	0	0	1	0	0	0	4004	72	3	5	2377	5	CTDP1	18	77477938	Missense_Mutation	SNP	A	TCGA-BP-4988-01A-01D-1462-08		77477938	599310	39	22406			1	44		2	2	19	N	C_A	2.558375e-05
CTDP1	9150	broad.mit.edu	37	18	77477956	77477956	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	T	77477956	T	T	77477956	3	4	382	1	0	0	0	0	1	0	0	0	4004	739	26	2	2395	2	CTDP1	18	77477956	Missense_Mutation	SNP	C	TCGA-BP-4988-01A-01D-1462-08	18	77477956	599292	40	22407			1	44		2	2	19	N	C_A	2.558375e-05
ZNF136	7695	broad.mit.edu	37	19	12298092	12298092	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	12298092	A	A	12298092	3	1	382	1	0	0	0	0	1	0	0	0	17738	942	33	2	913	2	ZNF136	19	12298092	Missense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08		12298092	46830891	41	22408											
ZNF44	51710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12383395	12383395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	12383395	G	A	12383395	3	1	382	1	0	0	0	0	1	0	0	0	17924	1261	44	2	176	2	ZNF44	19	12383395	Missense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08	85303	12383395	46745588	42	22409											
RYR1	6261	hgsc.bcm.edu	37	19	38990455	38990455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	38990455	G	A	38990455	3	1	382	1	0	0	0	0	1	0	0	0	13781	1087	38	1	7382	1	RYR1	19	38990455	Missense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08	26607060	38990455	20138528	43	22410											
CBR1	873	broad.mit.edu	37	21	37444758	37444758	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	A	37444758	A	A	37444758	3	1	382	1	0	0	0	0	1	0	0	0	2710	1145	40	1	422	1	CBR1	21	37444758	Missense_Mutation	SNP	G	TCGA-BP-4988-01A-01D-1462-08		37444758	10685137	44	22411											
ZMYM3	9203	broad.mit.edu	37	X	70472956	70472956	+	Silent	SNP	A	G	G	novel		TCGA-BP-4988-01A-01D-1462-08	TCGA-BP-4988-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	792c9867-ceea-4520-bbb7-5dabe290664f	c9ae8ce7-d59d-4ddc-a305-066ac8b6a0c2	G	70472956	G	G	70472956	2	3	382	1	0	0	0	0	0	0	0	1	17713	59	3	3		3	ZMYM3	23	70472956	Silent	SNP	A	TCGA-BP-4988-01A-01D-1462-08		70472956	84797604	45	22412											
ATP1B1	481	broad.mit.edu	37	1	169076145	169076145	+	RNA	SNP	C	T	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	169076145	T	T	169076145	1	4	383	0	1	0	0	0	0	0	0	0	1132	697	25	2		2	ATP1B1	1	169076145	RNA	SNP	C	TCGA-BP-4989-01A-01D-1462-08		169076145	80174476	1	22413											
XIRP2	129446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	168101917	168101917	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	168101917	A	T	168101917	4	4	383	1	0	0	0	0	0	1	0	0	17442	15	1	5	4045	5	XIRP2	2	168101917	Nonsense_Mutation	SNP	A	TCGA-BP-4989-01A-01D-1462-08		168101917	75097456	2	22414											
MYO3B	140469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	171243748	171243748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	171243748	A	G	171243748	3	3	383	1	0	0	0	0	1	0	0	0	10084	43	2	3	1561	3	MYO3B	2	171243748	Missense_Mutation	SNP	A	TCGA-BP-4989-01A-01D-1462-08	3141831	171243748	71955625	3	22415											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179484439	179484439	+	Silent	SNP	T	T	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	179484439	T	C	179484439	2	2	383	1	0	0	0	0	0	0	0	1	16747	1654	58	3		3	TTN	2	179484439	Silent	SNP	T	TCGA-BP-4989-01A-01D-1462-08	8240691	179484439	63714934	4	22416											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179504809	179504809	+	Silent	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	179504809	G	A	179504809	2	1	383	1	0	0	0	0	0	0	0	1	16747	1161	41	2		2	TTN	2	179504809	Silent	SNP	G	TCGA-BP-4989-01A-01D-1462-08	20370	179504809	63694564	5	22417											
FN1	2335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	216262451	216262451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	216262451	T	C	216262451	3	2	383	1	0	0	0	0	1	0	0	0	5969	1559	54	3	4064	3	FN1	2	216262451	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08	36757642	216262451	26936922	6	22418											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188202	10188202	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	-	10188202	C	-	10188202	7	5	383	1	0	1	0	1	0	0	0	0	17174	506	18	0	351	0	VHL	3	10188202	Frame_Shift_Del	DEL	C	TCGA-BP-4989-01A-01D-1462-08		10188202	187834228	7	22419											
LRRC3B	116135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	26751684	26751684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	26751684	C	A	26751684	3	1	383	1	0	0	0	0	1	0	0	0	9003	536	19	4	523	4	LRRC3B	3	26751684	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	16563482	26751684	171270746	8	22420											
PLXNB1	5364	broad.mit.edu;hgsc.bcm.edu	37	3	48461035	48461035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	48461035	A	G	48461035	3	3	383	1	0	0	0	0	1	0	0	0	12130	304	11	3	3859	3	PLXNB1	3	48461035	Missense_Mutation	SNP	A	TCGA-BP-4989-01A-01D-1462-08	21709351	48461035	149561395	9	22421											
PBRM1	55193	hgsc.bcm.edu	37	3	52610639	52610640	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	-	52610640	CT	-	52610639	7	5	383	1	0	1	0	1	0	0	0	0	11498	796	28	0	1327	0	PBRM1	3	52610639	Frame_Shift_Del	DEL	CT	TCGA-BP-4989-01A-01D-1462-08	4149604	52610639	145411791	10	22422											
ROBO1	6091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	78706388	78706388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	78706388	T	C	78706388	3	2	383	1	0	0	0	0	1	0	0	0	13526	1696	59	3	2537	3	ROBO1	3	78706388	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08	26095749	78706388	119316042	11	22423	270	2									
ROBO1	6091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	78706390	78706390	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	78706390	G	T	78706390	4	4	383	1	0	0	0	0	0	1	0	0	13526	1256	44	4	2539	4	ROBO1	3	78706390	Nonsense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	2	78706390	119316040	12	22424	270	2									
WDR5B	54554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	122134164	122134164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	122134164	T	C	122134164	3	2	383	1	0	0	0	0	1	0	0	0	17321	1406	49	3	784	3	WDR5B	3	122134164	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08	43427774	122134164	75888266	13	22425											
DHX36	170506	hgsc.bcm.edu;ucsc.edu	37	3	153994678	153994678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	153994678	T	C	153994678	3	2	383	1	0	0	0	0	1	0	0	0	4511	1406	49	3	335	3	DHX36	3	153994678	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08	31860514	153994678	44027752	14	22426											
DGKG	1608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	185882703	185882703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	185882703	C	T	185882703	3	4	383	1	0	0	0	0	1	0	0	0	4471	768	27	1	187	1	DGKG	3	185882703	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	31888025	185882703	12139727	15	22427											
FAM193A	8603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	2674032	2674032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	2674032	T	C	2674032	3	2	383	1	0	0	0	0	1	0	0	0	5528	1725	60	3	1425	3	FAM193A	4	2674032	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08		2674032	188480244	16	22428											
GPR78	27201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	8584304	8584304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	8584304	G	A	8584304	3	1	383	1	0	0	0	0	1	0	0	0	6717	1087	38	1	721	1	GPR78	4	8584304	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	5910272	8584304	182569972	17	22429											
SEC24B	10427	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	110402835	110402835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	110402835	G	A	110402835	3	1	383	1	0	0	0	0	1	0	0	0	14008	1145	40	1	1077	1	SEC24B	4	110402835	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	101818531	110402835	80751441	18	22430											
PCDH10	57575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	134072133	134072133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	134072133	G	A	134072133	3	1	383	1	0	0	0	0	1	0	0	0	11514	1232	43	2	840	2	PCDH10	4	134072133	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	23669298	134072133	57082143	19	22431											
ODZ3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	183714119	183714119	+	Silent	SNP	C	C	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	183714119	C	G	183714119	2	3	383	1	0	0	0	0	0	0	0	1	10843	813	29	4		4	ODZ3	4	183714119	Silent	SNP	C	TCGA-BP-4989-01A-01D-1462-08	49641986	183714119	7440157	20	22432											
EDIL3	10085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	83356228	83356228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	83356228	G	A	83356228	3	1	383	1	0	0	0	0	1	0	0	0	4917	1145	40	1	426	1	EDIL3	5	83356228	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08		83356228	97559032	21	22433											
PCDHA3	56145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140182765	140182765	+	Silent	SNP	C	C	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	140182765	C	A	140182765	2	1	383	1	0	0	0	0	0	0	0	1	11532	581	21	4		4	PCDHA3	5	140182765	Silent	SNP	C	TCGA-BP-4989-01A-01D-1462-08	56826537	140182765	40732495	22	22434											
PCDHA7	56141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140216218	140216218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	140216218	C	A	140216218	3	1	383	1	0	0	0	0	1	0	0	0	11536	912	32	4	2252	4	PCDHA7	5	140216218	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	33453	140216218	40699042	23	22435											
MFAP3	4238	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	153432673	153432673	+	Silent	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	153432673	C	T	153432673	2	4	383	1	0	0	0	0	0	0	0	1	9522	813	29	2		2	MFAP3	5	153432673	Silent	SNP	C	TCGA-BP-4989-01A-01D-1462-08	13216455	153432673	27482587	24	22436											
SLIT3	6586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	168114104	168114104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	168114104	C	T	168114104	3	4	383	1	0	0	0	0	1	0	0	0	14754	739	26	2	1405	2	SLIT3	5	168114104	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	14681431	168114104	12801156	25	22437											
FLT4	2324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	180056415	180056415	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	180056415	T	G	180056415	3	3	383	1	0	0	0	0	1	0	0	0	5951	1763	61	5	3366	5	FLT4	5	180056415	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08	11942311	180056415	858845	26	22438											
KIF13A	63971	broad.mit.edu;ucsc.edu	37	6	17898399	17898399	+	Silent	SNP	C	T	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	17898399	T	T	17898399	2	4	383	1	0	0	0	0	0	0	0	1	8281	695	24	2		2	KIF13A	6	17898399	Silent	SNP	C	TCGA-BP-4989-01A-01D-1462-08		17898399	153216668	27	22439											
FAM135A	57579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	71186969	71186969	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	71186969	T	G	71186969	3	3	383	1	0	0	0	0	1	0	0	0	5452	1783	62	5	494	5	FAM135A	6	71186969	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08	53288570	71186969	99928098	28	22440											
GABRR1	2569	hgsc.bcm.edu	37	6	89888680	89888680	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	89888680	C	G	89888680	3	3	383	1	0	0	0	0	1	0	0	0	6183	603	21	4	194	4	GABRR1	6	89888680	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	18701711	89888680	81226387	29	22441											
FBXL4	26235	broad.mit.edu;hgsc.bcm.edu	37	6	99365256	99365256	+	Silent	SNP	A	A	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	99365256	A	C	99365256	2	2	383	1	0	0	0	0	0	0	0	1	5728	59	3	5		5	FBXL4	6	99365256	Silent	SNP	A	TCGA-BP-4989-01A-01D-1462-08	9476576	99365256	71749811	30	22442											
MED23	9439	broad.mit.edu	37	6	131931276	131931276	+	Silent	SNP	G	T	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	131931276	T	T	131931276	2	4	383	1	0	0	0	0	0	0	0	1	9448	1161	41	4		4	MED23	6	131931276	Silent	SNP	G	TCGA-BP-4989-01A-01D-1462-08	32566020	131931276	39183791	31	22443											
LATS1	9113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	150004564	150004564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	150004564	C	T	150004564	3	4	383	1	0	0	0	0	1	0	0	0	8653	855	30	2	1751	2	LATS1	6	150004564	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	18073288	150004564	21110503	32	22444											
MLL5	55904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	104719411	104719411	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	104719411	G	A	104719411	5	1	383	1	0	0	0	0	0	0	1	0	9631	1275	44	2	1287	2	MLL5	7	104719411	Splice_Site	SNP	G	TCGA-BP-4989-01A-01D-1462-08		104719411	54419252	33	22445											
OR2A1	346528	broad.mit.edu	37	7	143929685	143929685	+	Silent	SNP	G	T	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	143929685	T	T	143929685	2	4	383	1	0	0	0	0	0	0	0	1	10981	1161	41	4		4	OR2A1	7	143929685	Silent	SNP	G	TCGA-BP-4989-01A-01D-1462-08	39210274	143929685	15208978	34	22446											
PRKACG	5568	broad.mit.edu;hgsc.bcm.edu	37	9	71628614	71628614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	71628614	C	T	71628614	3	4	383	1	0	0	0	0	1	0	0	0	12509	768	27	1	664	1	PRKACG	9	71628614	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08		71628614	69584817	35	22447											
NR4A3	8013	broad.mit.edu	37	9	102591255	102591255	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	102591255	A	A	102591255	3	1	383	1	0	0	0	0	1	0	0	0	10641	1232	43	2	970	2	NR4A3	9	102591255	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	30962641	102591255	38622176	36	22448											
RGS3	5998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	116299108	116299108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	116299108	C	G	116299108	3	3	383	1	0	0	0	0	1	0	0	0	13319	564	20	4	2162	4	RGS3	9	116299108	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	13707853	116299108	24914323	37	22449											
ABO	28	hgsc.bcm.edu	37	9	136131622	136131622	+	Frame_Shift_Del	DEL	T	T	-	rs56284703		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	-	136131622	T	-	136131622	7	5	383	1	0	1	0	1	0	0	0	0	97	1667	58	0	572	0	ABO	9	136131622	Frame_Shift_Del	DEL	T	TCGA-BP-4989-01A-01D-1462-08	19832514	136131622	5081809	38	22450											
KIAA1217	56243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	24834980	24834980	+	Silent	SNP	C	C	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	24834980	C	A	24834980	2	1	383	1	0	0	0	0	0	0	0	1	8223	813	29	4		4	KIAA1217	10	24834980	Silent	SNP	C	TCGA-BP-4989-01A-01D-1462-08		24834980	110699767	39	22451											
ZNF438	220929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	31138528	31138528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	31138528	A	G	31138528	3	3	383	1	0	0	0	0	1	0	0	0	17922	217	8	3	1688	3	ZNF438	10	31138528	Missense_Mutation	SNP	A	TCGA-BP-4989-01A-01D-1462-08	6303548	31138528	104396219	40	22452											
PLAU	5328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75673067	75673067	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	75673067	C	T	75673067	4	4	383	1	0	0	0	0	0	1	0	0	12029	760	27	1	444	1	PLAU	10	75673067	Nonsense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	44534539	75673067	59861680	41	22453											
ZFYVE27	118813	broad.mit.edu;hgsc.bcm.edu	37	10	99512825	99512825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	99512825	G	A	99512825	3	1	383	1	0	0	0	0	1	0	0	0	17681	943	33	2	977	2	ZFYVE27	10	99512825	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	23839758	99512825	36021922	42	22454											
OR51D1	390038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4661302	4661302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	4661302	G	T	4661302	3	4	383	1	0	0	0	0	1	0	0	0	11100	1348	47	4	284	4	OR51D1	11	4661302	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08		4661302	130345214	43	22455											
PAAF1	80227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	73638349	73638349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	73638349	A	T	73638349	3	4	383	1	0	0	0	0	1	0	0	0	11369	188	7	5	1167	5	PAAF1	11	73638349	Missense_Mutation	SNP	A	TCGA-BP-4989-01A-01D-1462-08	68977047	73638349	61368167	44	22456											
ALG8	79053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	77812070	77812070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	77812070	C	A	77812070	3	1	383	1	0	0	0	0	1	0	0	0	523	508	18	4	63	4	ALG8	11	77812070	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	4173721	77812070	57194446	45	22457											
CHD4	1108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6688041	6688041	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	6688041	T	G	6688041	3	3	383	1	0	0	0	0	1	0	0	0	3329	1435	50	5	814	5	CHD4	12	6688041	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08		6688041	127163854	46	22458											
PLEKHA5	54477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	19410396	19410396	+	Silent	SNP	T	T	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	19410396	T	C	19410396	2	2	383	1	0	0	0	0	0	0	0	1	12066	1490	52	3		3	PLEKHA5	12	19410396	Silent	SNP	T	TCGA-BP-4989-01A-01D-1462-08	12722355	19410396	114441499	47	22459											
OR8S1	341568	broad.mit.edu	37	12	48921863	48921863	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	48921863	A	A	48921863	3	1	383	1	0	0	0	0	1	0	0	0	11253	1087	38	1	1063	1	OR8S1	12	48921863	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	29511467	48921863	84930032	48	22460											
KRT85	3891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52756641	52756641	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	52756641	G	T	52756641	4	4	383	1	0	0	0	0	0	1	0	0	8506	1195	42	4	465	4	KRT85	12	52756641	Nonsense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	3834778	52756641	81095254	49	22461											
KRT1	3848	broad.mit.edu;ucsc.edu	37	12	53069018	53069018	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	53069018	T	T	53069018	3	4	383	1	0	0	0	0	1	0	0	0	8454	536	19	1	44	1	KRT1	12	53069018	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	312377	53069018	80782877	50	22462											
ERBB3	2065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56487573	56487573	+	Silent	SNP	A	A	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	56487573	A	G	56487573	2	3	383	1	0	0	0	0	0	0	0	1	5210	146	6	3		3	ERBB3	12	56487573	Silent	SNP	A	TCGA-BP-4989-01A-01D-1462-08	3418555	56487573	77364322	51	22463											
TSPAN19	144448	broad.mit.edu;ucsc.edu	37	12	85421790	85421790	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	85421790	A	A	85421790	3	1	383	1	0	0	0	0	1	0	0	0	16655	1290	45	2	619	2	TSPAN19	12	85421790	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	28934217	85421790	48430105	52	22464											
SLC7A1	6541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	30091722	30091722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	30091722	T	C	30091722	3	2	383	1	0	0	0	0	1	0	0	0	14705	1725	60	3	407	3	SLC7A1	13	30091722	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08		30091722	85078156	53	22465											
PCDH9	5101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	67205519	67205519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	67205519	G	A	67205519	3	1	383	1	0	0	0	0	1	0	0	0	11525	942	33	2	558	2	PCDH9	13	67205519	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	37113797	67205519	47964359	54	22466											
FAM158A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24608257	24608257	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	24608257	G	C	24608257	3	2	383	1	0	0	0	0	1	0	0	0	5471	1357	47	4	41	4	FAM158A	14	24608257	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08		24608257	82741283	55	22467											
KLC1	3831	hgsc.bcm.edu;ucsc.edu	37	14	104129226	104129226	+	Silent	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	104129226	C	T	104129226	2	4	383	1	0	0	0	0	0	0	0	1	8340	535	19	1		1	KLC1	14	104129226	Silent	SNP	C	TCGA-BP-4989-01A-01D-1462-08	79520969	104129226	3220314	56	22468											
MAN2C1	4123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75650634	75650634	+	Missense_Mutation	SNP	C	C	G	rs150703780		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	75650634	C	G	75650634	3	3	383	1	0	0	0	0	1	0	0	0	9225	536	19	4	691	4	MAN2C1	15	75650634	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08		75650634	26880758	57	22469											
IL16	3603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	81589274	81589274	+	Silent	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	81589274	G	A	81589274	2	1	383	1	0	0	0	0	0	0	0	1	7640	1045	37	1		1	IL16	15	81589274	Silent	SNP	G	TCGA-BP-4989-01A-01D-1462-08	5938640	81589274	20942118	58	22470											
AXIN1	8312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	396290	396290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	396290	C	T	396290	3	4	383	1	0	0	0	0	1	0	0	0	1236	864	30	2	1892	2	AXIN1	16	396290	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08		396290	89958463	59	22471	271	2									
AXIN1	8312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	396291	396291	+	Silent	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	396291	C	T	396291	2	4	383	1	0	0	0	0	0	0	0	1	1236	680	24	2		2	AXIN1	16	396291	Silent	SNP	C	TCGA-BP-4989-01A-01D-1462-08	1	396291	89958462	60	22472	271	2									
SEC14L5	9717	broad.mit.edu	37	16	5050877	5050877	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	5050877	A	A	5050877	3	1	383	1	0	0	0	0	1	0	0	0	13998	1001	35	2	1115	2	SEC14L5	16	5050877	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	4654586	5050877	85303876	61	22473											
ABCC6	368	broad.mit.edu;ucsc.edu	37	16	16244592	16244592	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	16244592	T	T	16244592	3	4	383	1	0	0	0	0	1	0	0	0	57	1000	35	4	273	4	ABCC6	16	16244592	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	11193715	16244592	74110161	62	22474											
GINS3	64785	hgsc.bcm.edu	37	16	58438630	58438630	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	-	58438630	C	-	58438630	7	5	383	1	0	1	0	1	0	0	0	0	6396	564	20	0	779	0	GINS3	16	58438630	Frame_Shift_Del	DEL	C	TCGA-BP-4989-01A-01D-1462-08	42194038	58438630	31916123	63	22475											
HOXB1	3211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	46608210	46608210	+	Silent	SNP	G	G	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	46608210	G	T	46608210	2	4	383	1	0	0	0	0	0	0	0	1	7306	1335	47	4		4	HOXB1	17	46608210	Silent	SNP	G	TCGA-BP-4989-01A-01D-1462-08		46608210	34587000	64	22476											
KIF2B	84643	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	51900736	51900736	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	51900736	A	C	51900736	3	2	383	1	0	0	0	0	1	0	0	0	8305	98	4	5	344	5	KIF2B	17	51900736	Missense_Mutation	SNP	A	TCGA-BP-4989-01A-01D-1462-08	5292526	51900736	29294474	65	22477											
TTYH2	94015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72249930	72249930	+	Silent	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	72249930	C	T	72249930	2	4	383	1	0	0	0	0	0	0	0	1	16752	547	19	1		1	TTYH2	17	72249930	Silent	SNP	C	TCGA-BP-4989-01A-01D-1462-08	20349194	72249930	8945280	66	22478											
ILF3	3609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10799269	10799269	+	Silent	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	10799269	C	T	10799269	2	4	383	1	0	0	0	0	0	0	0	1	7719	784	28	2		2	ILF3	19	10799269	Silent	SNP	C	TCGA-BP-4989-01A-01D-1462-08		10799269	48329714	67	22479											
DHX34	9704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	47856562	47856562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	47856562	C	T	47856562	3	4	383	1	0	0	0	0	1	0	0	0	4509	768	27	1	277	1	DHX34	19	47856562	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	37057293	47856562	11272421	68	22480											
ZFP28	140612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57065721	57065721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	57065721	C	A	57065721	3	1	383	1	0	0	0	0	1	0	0	0	17654	478	17	4	1597	4	ZFP28	19	57065721	Missense_Mutation	SNP	C	TCGA-BP-4989-01A-01D-1462-08	9209159	57065721	2063262	69	22481											
FLRT3	23767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	14307334	14307334	+	Silent	SNP	G	G	C	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	C	14307334	G	C	14307334	2	2	383	1	0	0	0	0	0	0	0	1	5947	929	33	4		4	FLRT3	20	14307334	Silent	SNP	G	TCGA-BP-4989-01A-01D-1462-08		14307334	48718186	70	22482											
BACH1	571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	30693729	30693729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	30693729	A	G	30693729	3	3	383	1	0	0	0	0	1	0	0	0	1283	188	7	3	130	3	BACH1	21	30693729	Missense_Mutation	SNP	A	TCGA-BP-4989-01A-01D-1462-08		30693729	17436166	71	22483											
KRTAP13-2	337959	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	31744251	31744251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	31744251	G	A	31744251	3	1	383	1	0	0	0	0	1	0	0	0	8530	1145	40	1	250	1	KRTAP13-2	21	31744251	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08	1050522	31744251	16385644	72	22484											
BRWD1	54014	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	40590148	40590148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	40590148	A	G	40590148	3	3	383	1	0	0	0	0	1	0	0	0	1527	391	14	3	3660	3	BRWD1	21	40590148	Missense_Mutation	SNP	A	TCGA-BP-4989-01A-01D-1462-08	8845897	40590148	7539747	73	22485											
OTUD6A	139562	broad.mit.edu	37	X	69282742	69282742	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	T	69282742	T	T	69282742	3	4	383	1	0	0	0	0	1	0	0	0	11323	1203	42	4	370	4	OTUD6A	23	69282742	Missense_Mutation	SNP	G	TCGA-BP-4989-01A-01D-1462-08		69282742	85987818	74	22486											
MORC4	79710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	106186437	106186437	+	Splice_Site	SNP	T	T	A	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	A	106186437	T	A	106186437	5	1	383	1	0	0	0	0	0	0	1	0	9711	1594	55	5	1141	5	MORC4	23	106186437	Splice_Site	SNP	T	TCGA-BP-4989-01A-01D-1462-08	36903695	106186437	49084123	75	22487											
LONRF3	79836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	118140161	118140161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	118140161	A	G	118140161	3	3	383	1	0	0	0	0	1	0	0	0	8903	43	2	3	1515	3	LONRF3	23	118140161	Missense_Mutation	SNP	A	TCGA-BP-4989-01A-01D-1462-08	11953724	118140161	37130399	76	22488											
FRMD7	90167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	131212433	131212433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4989-01A-01D-1462-08	TCGA-BP-4989-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7096085b-cd5b-4cd1-8957-a6adcf7e818a	79d2b099-9648-4699-a5c3-17e90c5aed60	G	131212433	T	G	131212433	3	3	383	1	0	0	0	0	1	0	0	0	6062	1406	49	5	536	5	FRMD7	23	131212433	Missense_Mutation	SNP	T	TCGA-BP-4989-01A-01D-1462-08	13072272	131212433	24058127	77	22489											
NOL9	79707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	6592628	6592628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	6592628	G	T	6592628	3	4	384	1	0	0	0	0	1	0	0	0	10535	971	34	4	698	4	NOL9	1	6592628	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08		6592628	242657993	1	22490											
RNF19B	127544	hgsc.bcm.edu;ucsc.edu	37	1	33402518	33402518	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	-	33402518	G	-	33402518	7	5	384	1	0	1	0	1	0	0	0	0	13484	987	35	0	114	0	RNF19B	1	33402518	Frame_Shift_Del	DEL	G	TCGA-BP-4991-01A-01D-1462-08	26809890	33402518	215848103	2	22491											
GJA5	2702	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	147230622	147230622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	147230622	C	T	147230622	3	4	384	1	0	0	0	0	1	0	0	0	6411	652	23	1	355	1	GJA5	1	147230622	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08	113828104	147230622	102019999	3	22492											
FCRL1	115350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	157767975	157767975	+	Missense_Mutation	SNP	G	G	T	rs150869330	alternate_allele	TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	157767975	G	T	157767975	3	4	384	1	0	0	0	0	1	0	0	0	5801	1328	46	4	281	4	FCRL1	1	157767975	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08	10537353	157767975	91482646	4	22493											
DSTYK	25778	hgsc.bcm.edu;ucsc.edu	37	1	205129247	205129247	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	-	205129247	A	-	205129247	7	5	384	1	0	1	0	1	0	0	0	0	4787	456	16	0	713	0	DSTYK	1	205129247	Frame_Shift_Del	DEL	A	TCGA-BP-4991-01A-01D-1462-08	47361272	205129247	44121374	5	22494											
WDR26	80232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	224599175	224599175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	224599175	G	T	224599175	3	4	384	1	0	0	0	0	1	0	0	0	17295	1319	46	4	905	4	WDR26	1	224599175	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08	19469928	224599175	24651446	6	22495											
RGPD3	653489	broad.mit.edu	37	2	107049575	107049575	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	107049575	T	T	107049575	3	4	384	1	0	0	0	0	1	0	0	0	13300	565	20	2	2936	2	RGPD3	2	107049575	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08		107049575	136149798	7	22496											
GLI2	2736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	121742131	121742131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	121742131	G	T	121742131	3	4	384	1	0	0	0	0	1	0	0	0	6445	1116	39	4	1810	4	GLI2	2	121742131	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08	14692556	121742131	121457242	8	22497											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188215	10188226	+	In_Frame_Del	DEL	AGAGATGCAGGG	AGAGATGCAGGG	-	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	AGAGATGCAGGG	AGAGATGCAGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	-	10188226	AGAGATGCAGGG	-	10188215	7	5	384	1	0	1	0	1	0	0	0	0	17174	180	7	0	364	0	VHL	3	10188215	In_Frame_Del	DEL	AGAGATGCAGGG	TCGA-BP-4991-01A-01D-1462-08		10188215	187834215	9	22498											
CC2D2A	57545	broad.mit.edu;hgsc.bcm.edu	37	4	15511767	15511767	+	Silent	SNP	G	G	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	15511767	G	A	15511767	2	1	384	1	0	0	0	0	0	0	0	1	2730	1161	41	2		2	CC2D2A	4	15511767	Silent	SNP	G	TCGA-BP-4991-01A-01D-1462-08		15511767	175642509	10	22499											
SLC7A11	23657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	139100476	139100476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	139100476	G	T	139100476	3	4	384	1	0	0	0	0	1	0	0	0	14707	1232	43	4	174	4	SLC7A11	4	139100476	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08	123588709	139100476	52053800	11	22500											
HEATR7B2	0	hgsc.bcm.edu	37	5	41052635	41052635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	G	41052635	C	G	41052635	3	3	384	1	0	0	0	0	1	0	0	0	7042	835	29	4	3719	4	HEATR7B2	5	41052635	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08		41052635	139862625	12	22501											
SLC27A6	28965	broad.mit.edu;hgsc.bcm.edu	37	5	128302249	128302249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	128302249	G	T	128302249	3	4	384	1	0	0	0	0	1	0	0	0	14543	1087	38	4	421	4	SLC27A6	5	128302249	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08	87249614	128302249	52613011	13	22502											
ADAMTS19	171019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	129070698	129070698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	129070698	G	T	129070698	3	4	384	1	0	0	0	0	1	0	0	0	264	1174	41	4	3454	4	ADAMTS19	5	129070698	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08	768449	129070698	51844562	14	22503											
SGCD	6444	broad.mit.edu;ucsc.edu	37	5	156074477	156074477	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	156074477	T	T	156074477	3	4	384	1	0	0	0	0	1	0	0	0	14214	768	27	1	528	1	SGCD	5	156074477	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08	27003779	156074477	24840783	15	22504											
C6orf47	57827	broad.mit.edu;hgsc.bcm.edu	37	6	31627292	31627292	+	Silent	SNP	A	A	G	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	G	31627292	A	G	31627292	2	3	384	1	0	0	0	0	0	0	0	1	2366	98	4	3		3	C6orf47	6	31627292	Silent	SNP	A	TCGA-BP-4991-01A-01D-1462-08		31627292	139487775	16	22505											
TRRAP	8295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	98547298	98547298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	98547298	G	T	98547298	3	4	384	1	0	0	0	0	1	0	0	0	16613	1029	36	4	5028	4	TRRAP	7	98547298	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08		98547298	60591365	17	22506											
SPAM1	6677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	123594289	123594289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	123594289	C	T	123594289	3	4	384	1	0	0	0	0	1	0	0	0	14999	652	23	1	667	1	SPAM1	7	123594289	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08	25046991	123594289	35544374	18	22507											
CNGB3	54714	hgsc.bcm.edu;ucsc.edu	37	8	87683239	87683244	+	In_Frame_Del	DEL	TCTTTG	TCTTTG	-	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	TCTTTG	TCTTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	-	87683244	TCTTTG	-	87683239	7	5	384	1	0	1	0	1	0	0	0	0	3603	1780	62	0	2063	0	CNGB3	8	87683239	In_Frame_Del	DEL	TCTTTG	TCGA-BP-4991-01A-01D-1462-08		87683239	58680783	19	22508											
MEGF9	1955	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123476115	123476115	+	Silent	SNP	G	G	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	123476115	G	A	123476115	2	1	384	1	0	0	0	0	0	0	0	1	9471	1219	43	2		2	MEGF9	9	123476115	Silent	SNP	G	TCGA-BP-4991-01A-01D-1462-08		123476115	17737316	20	22509											
CREM	1390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	35495906	35495906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	35495906	G	A	35495906	3	1	384	1	0	0	0	0	1	0	0	0	3870	1117	39	1	956	1	CREM	10	35495906	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08		35495906	100038841	21	22510											
FRMPD2	143162	broad.mit.edu;hgsc.bcm.edu	37	10	49420020	49420020	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	G	49420020	C	G	49420020	3	3	384	1	0	0	0	0	1	0	0	0	6065	855	30	4	2409	4	FRMPD2	10	49420020	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08	13924114	49420020	86114727	22	22511	272	2									
FRMPD2	143162	broad.mit.edu;hgsc.bcm.edu	37	10	49420021	49420021	+	Silent	SNP	C	C	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	49420021	C	T	49420021	2	4	384	1	0	0	0	0	0	0	0	1	6065	680	24	2		2	FRMPD2	10	49420021	Silent	SNP	C	TCGA-BP-4991-01A-01D-1462-08	1	49420021	86114726	23	22512	272	2									
OR51E1	143503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4674482	4674482	+	Silent	SNP	T	T	G	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	G	4674482	T	G	4674482	2	3	384	1	0	0	0	0	0	0	0	1	11101	1596	56	5		5	OR51E1	11	4674482	Silent	SNP	T	TCGA-BP-4991-01A-01D-1462-08		4674482	130332034	24	22513											
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117352764	117352764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	117352764	C	A	117352764	3	1	384	1	0	0	0	0	1	0	0	0	4771	623	22	4	3776	4	DSCAML1	11	117352764	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08	112678282	117352764	17653752	25	22514											
PLXNC1	10154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	94642074	94642074	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	C	94642074	A	C	94642074	3	2	384	1	0	0	0	0	1	0	0	0	12133	98	4	5	2718	5	PLXNC1	12	94642074	Missense_Mutation	SNP	A	TCGA-BP-4991-01A-01D-1462-08		94642074	39209821	26	22515											
SLC25A3	5250	hgsc.bcm.edu;ucsc.edu	37	12	98995243	98995244	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	C	98995244	-	C	98995243	7	5	384	1	0	1	1	0	0	0	0	0	14506	1770	62	0	1178	0	SLC25A3	12	98995243	Frame_Shift_Ins	INS	-	TCGA-BP-4991-01A-01D-1462-08	4353169	98995243	34856652	27	22516											
HTR2A	3356	broad.mit.edu	37	13	47470003	47470003	+	Silent	SNP	T	A	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	47470003	A	A	47470003	2	1	384	1	0	0	0	0	0	0	0	1	7448	1799	63	5		5	HTR2A	13	47470003	Silent	SNP	T	TCGA-BP-4991-01A-01D-1462-08		47470003	67699875	28	22517											
SLC7A8	23428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23608686	23608686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	G	23608686	A	G	23608686	3	3	384	1	0	0	0	0	1	0	0	0	14717	362	13	3	772	3	SLC7A8	14	23608686	Missense_Mutation	SNP	A	TCGA-BP-4991-01A-01D-1462-08		23608686	83740854	29	22518											
SERPINA1	5265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94844895	94844895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	94844895	G	T	94844895	3	4	384	1	0	0	0	0	1	0	0	0	14099	942	33	4	112	4	SERPINA1	14	94844895	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08	71236209	94844895	12504645	30	22519											
APBA2	321	broad.mit.edu;hgsc.bcm.edu	37	15	29346935	29346935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	29346935	C	T	29346935	3	4	384	1	0	0	0	0	1	0	0	0	757	893	31	1	850	1	APBA2	15	29346935	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08		29346935	73184457	31	22520											
TM6SF1	53346	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	83805262	83805262	+	Silent	SNP	T	T	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	83805262	T	A	83805262	2	1	384	1	0	0	0	0	0	0	0	1	15984	1770	62	5		5	TM6SF1	15	83805262	Silent	SNP	T	TCGA-BP-4991-01A-01D-1462-08	54458327	83805262	18726130	32	22521											
MFGE8	4240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89449935	89449935	+	Silent	SNP	G	G	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	89449935	G	A	89449935	2	1	384	1	0	0	0	0	0	0	0	1	9527	1256	44	2		2	MFGE8	15	89449935	Silent	SNP	G	TCGA-BP-4991-01A-01D-1462-08	5644673	89449935	13081457	33	22522											
RHOT2	89941	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	722787	722787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	722787	G	A	722787	3	1	384	1	0	0	0	0	1	0	0	0	13357	1290	45	2	1555	2	RHOT2	16	722787	Missense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08		722787	89631966	34	22523											
DNAH3	55567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	21151927	21151927	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	C	21151927	A	C	21151927	3	2	384	1	0	0	0	0	1	0	0	0	4605	304	11	5	11955	5	DNAH3	16	21151927	Missense_Mutation	SNP	A	TCGA-BP-4991-01A-01D-1462-08	20429140	21151927	69202826	35	22524											
SLC12A4	6560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67980916	67980916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	G	67980916	T	G	67980916	3	3	384	1	0	0	0	0	1	0	0	0	14398	1609	56	5	1124	5	SLC12A4	16	67980916	Missense_Mutation	SNP	T	TCGA-BP-4991-01A-01D-1462-08	46828989	67980916	22373837	36	22525											
EFCAB5	374786	broad.mit.edu;hgsc.bcm.edu	37	17	28405489	28405489	+	Silent	SNP	G	G	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	28405489	G	A	28405489	2	1	384	1	0	0	0	0	0	0	0	1	4940	1103	39	1		1	EFCAB5	17	28405489	Silent	SNP	G	TCGA-BP-4991-01A-01D-1462-08		28405489	52789721	37	22526											
KRT35	3886	broad.mit.edu;hgsc.bcm.edu	37	17	39635602	39635602	+	Silent	SNP	C	C	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	39635602	C	T	39635602	2	4	384	1	0	0	0	0	0	0	0	1	8479	680	24	2		2	KRT35	17	39635602	Silent	SNP	C	TCGA-BP-4991-01A-01D-1462-08	11230113	39635602	41559608	38	22527											
HOXB13	10481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	46805884	46805884	+	Silent	SNP	C	C	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	46805884	C	T	46805884	2	4	384	1	0	0	0	0	0	0	0	1	7307	726	26	2		2	HOXB13	17	46805884	Silent	SNP	C	TCGA-BP-4991-01A-01D-1462-08	7170282	46805884	34389326	39	22528											
TOB1	10140	hgsc.bcm.edu;ucsc.edu	37	17	48940796	48940797	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	-	48940797	TA	-	48940796	7	5	384	1	0	1	0	1	0	0	0	0	16359	1522	53	0	458	0	TOB1	17	48940796	Frame_Shift_Del	DEL	TA	TCGA-BP-4991-01A-01D-1462-08	2134912	48940796	32254414	40	22529											
TRIM25	7706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	54985850	54985850	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	G	54985850	T	G	54985850	3	3	384	1	0	0	0	0	1	0	0	0	16511	1780	62	5	1252	5	TRIM25	17	54985850	Missense_Mutation	SNP	T	TCGA-BP-4991-01A-01D-1462-08	6045054	54985850	26209360	41	22530											
MPO	4353	broad.mit.edu	37	17	56350261	56350261	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	G	56350261	G	G	56350261	3	3	384	1	0	0	0	0	1	0	0	0	9739	304	11	3	609	3	MPO	17	56350261	Missense_Mutation	SNP	A	TCGA-BP-4991-01A-01D-1462-08	1364411	56350261	24844949	42	22531											
POLG2	11232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62474074	62474074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	62474074	A	T	62474074	3	4	384	1	0	0	0	0	1	0	0	0	12208	11	1	5	137	5	POLG2	17	62474074	Missense_Mutation	SNP	A	TCGA-BP-4991-01A-01D-1462-08	6123813	62474074	18721136	43	22532											
FASN	2194	broad.mit.edu;hgsc.bcm.edu	37	17	80046746	80046746	+	Silent	SNP	G	G	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	80046746	G	A	80046746	2	1	384	1	0	0	0	0	0	0	0	1	5690	991	35	2		2	FASN	17	80046746	Silent	SNP	G	TCGA-BP-4991-01A-01D-1462-08	17572672	80046746	1148464	44	22533											
COL5A3	50509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10071471	10071471	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	10071471	G	T	10071471	4	4	384	1	0	0	0	0	0	1	0	0	3700	1024	36	4	298	4	COL5A3	19	10071471	Nonsense_Mutation	SNP	G	TCGA-BP-4991-01A-01D-1462-08		10071471	49057512	45	22534											
ECSIT	51295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11618640	11618640	+	Silent	SNP	G	G	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	11618640	G	A	11618640	2	1	384	1	0	0	0	0	0	0	0	1	4902	1103	39	1		1	ECSIT	19	11618640	Silent	SNP	G	TCGA-BP-4991-01A-01D-1462-08	1547169	11618640	47510343	46	22535											
GGT1	2678	broad.mit.edu;hgsc.bcm.edu	37	22	25010806	25010806	+	Silent	SNP	G	G	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	25010806	G	A	25010806	2	1	384	1	0	0	0	0	0	0	0	1	6368	1190	42	2		2	GGT1	22	25010806	Silent	SNP	G	TCGA-BP-4991-01A-01D-1462-08		25010806	26293760	47	22536											
HUWE1	10075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53612105	53612105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	53612105	C	A	53612105	3	1	384	1	0	0	0	0	1	0	0	0	7468	768	27	4	8436	4	HUWE1	23	53612105	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08		53612105	101658455	48	22537											
MSN	4478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	64959702	64959702	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	T	64959702	C	T	64959702	4	4	384	1	0	0	0	0	0	1	0	0	9892	595	21	2	1731	2	MSN	23	64959702	Nonsense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08	11347597	64959702	90310858	49	22538											
GUCY2F	2986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	108636245	108636245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4991-01A-01D-1462-08	TCGA-BP-4991-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	d54c714e-b1c4-4669-986d-5e13d2fc3cc3	11980286-4f68-4660-88d1-949a55304a45	A	108636245	C	A	108636245	3	1	384	1	0	0	0	0	1	0	0	0	6905	826	29	4	890	4	GUCY2F	23	108636245	Missense_Mutation	SNP	C	TCGA-BP-4991-01A-01D-1462-08	43676543	108636245	46634315	50	22539											
VHL	7428	hgsc.bcm.edu	37	3	10183830	10183831	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-BP-4992-01A-01D-1392-10	TCGA-BP-4992-11A-01D-1392-10	CG	CG	CG	-	CG	CG	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	d5f862a5-be33-4943-8746-41a354bbf03f	af086602-7697-47db-9386-999d8ab33c5a	-	10183831	CG	-	10183830	7	5	385	1	0	1	0	1	0	0	0	0	17174	536	19	0	301	0	VHL	3	10183830	Frame_Shift_Del	DEL	CG	TCGA-BP-4992-01A-01D-1392-10		10183830	187838600	1	22540	273	2									
VHL	7428	hgsc.bcm.edu	37	3	10183832	10183833	+	Missense_Mutation	DNP	CT	CT	AA	novel		TCGA-BP-4992-01A-01D-1392-10	TCGA-BP-4992-11A-01D-1392-10	CT	CT	CT	AA	CT	CT	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	d5f862a5-be33-4943-8746-41a354bbf03f	af086602-7697-47db-9386-999d8ab33c5a	AA	10183833	CT	AA	10183832	3	1	385	1	0	0	0	0	1	0	0	0	17174	796	28	4	303	4	VHL	3	10183832	Missense_Mutation	DNP	CT	TCGA-BP-4992-01A-01D-1392-10	2	10183832	187838598	2	22541	273	2									
MYOM3	127294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24419478	24419478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	24419478	G	A	24419478	3	1	386	1	0	0	0	0	1	0	0	0	10100	1232	43	2	3376	2	MYOM3	1	24419478	Missense_Mutation	SNP	G	TCGA-BP-4992-01A-01D-1462-08		24419478	224831143	1	22542											
TAF1B	9014	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	10051037	10051037	+	Silent	SNP	C	C	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	10051037	C	T	10051037	2	4	386	1	0	0	0	0	0	0	0	1	15532	883	31	1		1	TAF1B	2	10051037	Silent	SNP	C	TCGA-BP-4992-01A-01D-1462-08		10051037	233148336	2	22543											
PDIA6	10130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	10931989	10931989	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	G	10931989	C	G	10931989	3	3	386	1	0	0	0	0	1	0	0	0	11679	912	32	4	838	4	PDIA6	2	10931989	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08	880952	10931989	232267384	3	22544											
TET3	200424	broad.mit.edu	37	2	74328533	74328533	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	74328533	T	T	74328533	3	4	386	1	0	0	0	0	1	0	0	0	15783	1000	35	4	4247	4	TET3	2	74328533	Missense_Mutation	SNP	G	TCGA-BP-4992-01A-01D-1462-08	63396544	74328533	168870840	4	22545											
ITPRIPL1	150771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	96993809	96993809	+	Silent	SNP	C	C	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	96993809	C	T	96993809	2	4	386	1	0	0	0	0	0	0	0	1	7931	912	32	2		2	ITPRIPL1	2	96993809	Silent	SNP	C	TCGA-BP-4992-01A-01D-1462-08	22665276	96993809	146205564	5	22546											
SH3RF3	344558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	110053415	110053415	+	Silent	SNP	G	G	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	110053415	G	T	110053415	2	4	386	1	0	0	0	0	0	0	0	1	14273	1161	41	4		4	SH3RF3	2	110053415	Silent	SNP	G	TCGA-BP-4992-01A-01D-1462-08	13059606	110053415	133145958	6	22547											
BZW1	9689	broad.mit.edu;hgsc.bcm.edu	37	2	201682967	201682967	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	G	201682967	C	G	201682967	3	3	386	1	0	0	0	0	1	0	0	0	1580	711	25	4	696	4	BZW1	2	201682967	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08	91629552	201682967	41516406	7	22548											
AQP12A	375318	broad.mit.edu;hgsc.bcm.edu	37	2	241631411	241631411	+	Silent	SNP	C	C	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	241631411	C	A	241631411	2	1	386	1	0	0	0	0	0	0	0	1	824	610	22	4		4	AQP12A	2	241631411	Silent	SNP	C	TCGA-BP-4992-01A-01D-1462-08	39948444	241631411	1567962	8	22549											
MYL5	4636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	674308	674308	+	Silent	SNP	C	C	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	674308	C	T	674308	2	4	386	1	0	0	0	0	0	0	0	1	10057	639	23	1		1	MYL5	4	674308	Silent	SNP	C	TCGA-BP-4992-01A-01D-1462-08		674308	190479968	9	22550											
BOD1L	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	13604991	13604991	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	C	13604991	G	C	13604991	3	2	386	1	0	0	0	0	1	0	0	0	1483	971	34	4	5690	4	BOD1L	4	13604991	Missense_Mutation	SNP	G	TCGA-BP-4992-01A-01D-1462-08	12930683	13604991	177549285	10	22551	274	2									
BOD1L	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	13604992	13604992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	13604992	C	T	13604992	3	4	386	1	0	0	0	0	1	0	0	0	1483	797	28	2	5691	2	BOD1L	4	13604992	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08	1	13604992	177549284	11	22552	274	2									
FAM134B	54463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	16475310	16475310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	16475310	C	A	16475310	3	1	386	1	0	0	0	0	1	0	0	0	5450	913	32	4	463	4	FAM134B	5	16475310	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08		16475310	164439950	12	22553											
PCDHA12	56137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140257019	140257019	+	Silent	SNP	C	C	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	140257019	C	T	140257019	2	4	386	1	0	0	0	0	0	0	0	1	11529	535	19	1		1	PCDHA12	5	140257019	Silent	SNP	C	TCGA-BP-4992-01A-01D-1462-08	123781709	140257019	40658241	13	22554											
RNF130	55819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179382657	179382657	+	Silent	SNP	A	A	G	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	G	179382657	A	G	179382657	2	3	386	1	0	0	0	0	0	0	0	1	13451	11	1	3		3	RNF130	5	179382657	Silent	SNP	A	TCGA-BP-4992-01A-01D-1462-08	39125638	179382657	1532603	14	22555											
C7orf25	79020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	42949681	42949681	+	Silent	SNP	C	C	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	42949681	C	T	42949681	2	4	386	1	0	0	0	0	0	0	0	1	2382	912	32	2		2	C7orf25	7	42949681	Silent	SNP	C	TCGA-BP-4992-01A-01D-1462-08		42949681	116188982	15	22556											
ATP6V0A4	50617	broad.mit.edu;hgsc.bcm.edu	37	7	138417644	138417644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	C	138417644	T	C	138417644	3	2	386	1	0	0	0	0	1	0	0	0	1170	1725	60	3	660	3	ATP6V0A4	7	138417644	Missense_Mutation	SNP	T	TCGA-BP-4992-01A-01D-1462-08	95467963	138417644	20721019	16	22557											
PRSS37	136242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	141540818	141540818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	141540818	G	A	141540818	3	1	386	1	0	0	0	0	1	0	0	0	12636	971	34	2	695	2	PRSS37	7	141540818	Missense_Mutation	SNP	G	TCGA-BP-4992-01A-01D-1462-08	3123174	141540818	17597845	17	22558											
RHEB	6009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151188050	151188050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	151188050	A	T	151188050	3	4	386	1	0	0	0	0	1	0	0	0	13341	420	15	5	479	5	RHEB	7	151188050	Missense_Mutation	SNP	A	TCGA-BP-4992-01A-01D-1462-08	9647232	151188050	7950613	18	22559											
MTAP	4507	broad.mit.edu;hgsc.bcm.edu	37	9	21818193	21818193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	G	21818193	C	G	21818193	3	3	386	1	0	0	0	0	1	0	0	0	9918	825	29	4	353	4	MTAP	9	21818193	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08		21818193	119395238	19	22560											
ABCA1	19	broad.mit.edu;hgsc.bcm.edu	37	9	107558674	107558674	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	C	107558674	A	C	107558674	3	2	386	1	0	0	0	0	1	0	0	0	28	101	4	5	1684	5	ABCA1	9	107558674	Missense_Mutation	SNP	A	TCGA-BP-4992-01A-01D-1462-08	85740481	107558674	33654757	20	22561											
FKBP15	23307	broad.mit.edu	37	9	115973865	115973865	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	C	115973865	C	C	115973865	3	2	386	1	0	0	0	0	1	0	0	0	5912	98	4	5	3706	5	FKBP15	9	115973865	Missense_Mutation	SNP	A	TCGA-BP-4992-01A-01D-1462-08	8415191	115973865	25239566	21	22562											
WAC	51322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	28906668	28906668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	28906668	C	A	28906668	3	1	386	1	0	0	0	0	1	0	0	0	17259	913	32	4	1879	4	WAC	10	28906668	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08		28906668	106628079	22	22563											
INPP5A	3632	broad.mit.edu;ucsc.edu	37	10	134523924	134523924	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	134523924	A	A	134523924	3	1	386	1	0	0	0	0	1	0	0	0	7761	1174	41	2	641	2	INPP5A	10	134523924	Missense_Mutation	SNP	G	TCGA-BP-4992-01A-01D-1462-08	105617256	134523924	1010823	23	22564											
MICALCL	84953	broad.mit.edu	37	11	12316358	12316358	+	Silent	SNP	T	C	C	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	C	12316358	C	C	12316358	2	2	386	1	0	0	0	0	0	0	0	1	9579	1538	54	3		3	MICALCL	11	12316358	Silent	SNP	T	TCGA-BP-4992-01A-01D-1462-08		12316358	122690158	24	22565											
BTG1	694	hgsc.bcm.edu;ucsc.edu	37	12	92539248	92539249	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	G	92539249	-	G	92539248	7	5	386	1	0	1	1	0	0	0	0	0	1555	1464	51	0	459	0	BTG1	12	92539248	Frame_Shift_Ins	INS	-	TCGA-BP-4992-01A-01D-1462-08		92539248	41312647	25	22566											
KIAA1033	23325	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	105538583	105538583	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	C	105538583	A	C	105538583	3	2	386	1	0	0	0	0	1	0	0	0	8213	43	2	5	2353	5	KIAA1033	12	105538583	Missense_Mutation	SNP	A	TCGA-BP-4992-01A-01D-1462-08	12999335	105538583	28313312	26	22567											
CDC16	8881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	115007656	115007656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	115007656	C	A	115007656	3	1	386	1	0	0	0	0	1	0	0	0	3060	680	24	4	464	4	CDC16	13	115007656	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08		115007656	162222	27	22568											
BNC1	646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	83935682	83935682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	83935682	C	T	83935682	3	4	386	1	0	0	0	0	1	0	0	0	1474	652	23	1	2655	1	BNC1	15	83935682	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08		83935682	18595710	28	22569											
MMP25	64386	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3100517	3100517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	3100517	G	A	3100517	3	1	386	1	0	0	0	0	1	0	0	0	9669	1058	37	1	645	1	MMP25	16	3100517	Missense_Mutation	SNP	G	TCGA-BP-4992-01A-01D-1462-08		3100517	87254236	29	22570											
NOD2	64127	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	50733767	50733767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	50733767	C	T	50733767	3	4	386	1	0	0	0	0	1	0	0	0	10524	594	21	2	448	2	NOD2	16	50733767	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08	47633250	50733767	39620986	30	22571											
KIAA0664	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	2596082	2596082	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	2596082	G	A	2596082	4	1	386	1	0	0	0	0	0	1	0	0	8196	1357	47	2	770	2	KIAA0664	17	2596082	Nonsense_Mutation	SNP	G	TCGA-BP-4992-01A-01D-1462-08		2596082	78599128	31	22572											
ACE	1636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61555382	61555382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	61555382	G	A	61555382	3	1	386	1	0	0	0	0	1	0	0	0	136	1174	41	2	346	2	ACE	17	61555382	Missense_Mutation	SNP	G	TCGA-BP-4992-01A-01D-1462-08	58959300	61555382	19639828	32	22573											
ZNF407	55628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	72346181	72346181	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	C	72346181	A	C	72346181	3	2	386	1	0	0	0	0	1	0	0	0	17899	72	3	5	3208	5	ZNF407	18	72346181	Missense_Mutation	SNP	A	TCGA-BP-4992-01A-01D-1462-08		72346181	5731067	33	22574											
MYO1F	4542	broad.mit.edu;hgsc.bcm.edu	37	19	8606866	8606866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	8606866	C	T	8606866	3	4	386	1	0	0	0	0	1	0	0	0	10080	884	31	1	1818	1	MYO1F	19	8606866	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08		8606866	50522117	34	22575											
SMARCA4	6597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11143976	11143976	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	G	11143976	C	G	11143976	3	3	386	1	0	0	0	0	1	0	0	0	14783	768	27	4	3655	4	SMARCA4	19	11143976	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08	2537110	11143976	47985007	35	22576											
KCNN1	3780	broad.mit.edu	37	19	18104303	18104303	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	T	18104303	T	T	18104303	3	4	386	1	0	0	0	0	1	0	0	0	8085	643	23	1	1342	1	KCNN1	19	18104303	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08	6960327	18104303	41024680	36	22577											
C19orf55	148137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36258775	36258775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	36258775	C	A	36258775	3	1	386	1	0	0	0	0	1	0	0	0	1939	681	24	4	1062	4	C19orf55	19	36258775	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08	18154472	36258775	22870208	37	22578											
PNKP	11284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50364761	50364761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	G	50364761	C	G	50364761	3	3	386	1	0	0	0	0	1	0	0	0	12154	922	32	4	180	4	PNKP	19	50364761	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08	14105986	50364761	8764222	38	22579											
ZNF473	25888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50550275	50550275	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	G	50550275	C	G	50550275	3	3	386	1	0	0	0	0	1	0	0	0	17943	652	23	4	2589	4	ZNF473	19	50550275	Missense_Mutation	SNP	C	TCGA-BP-4992-01A-01D-1462-08	185514	50550275	8578708	39	22580											
SLC13A3	64849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	45239178	45239178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	C	45239178	T	C	45239178	3	2	386	1	0	0	0	0	1	0	0	0	14406	1464	51	3	1404	3	SLC13A3	20	45239178	Missense_Mutation	SNP	T	TCGA-BP-4992-01A-01D-1462-08		45239178	17786342	40	22581											
FBLN1	2192	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45960802	45960802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4992-01A-01D-1462-08	TCGA-BP-4992-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39df0e80-84d8-4ed8-9273-4743b14ee408	576f56ed-b2c7-4c79-ab0a-5bdc6b472431	A	45960802	G	A	45960802	3	1	386	1	0	0	0	0	1	0	0	0	5705	1174	41	2	2161	2	FBLN1	22	45960802	Missense_Mutation	SNP	G	TCGA-BP-4992-01A-01D-1462-08		45960802	5343764	41	22582											
GNB1	2782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	1749311	1749311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	1749311	C	A	1749311	3	1	387	1	0	0	0	0	1	0	0	0	6522	768	27	4	993	4	GNB1	1	1749311	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08		1749311	247501310	1	22583											
NPPB	4879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11918438	11918438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	11918438	G	A	11918438	3	1	387	1	0	0	0	0	1	0	0	0	10599	1377	48	2	191	2	NPPB	1	11918438	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	10169127	11918438	237332183	2	22584											
ECE1	1889	broad.mit.edu;hgsc.bcm.edu	37	1	21616586	21616586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	21616586	C	T	21616586	3	4	387	1	0	0	0	0	1	0	0	0	4891	884	31	1	2371	1	ECE1	1	21616586	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	9698148	21616586	227634035	3	22585											
LUZP1	7798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	23418890	23418890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	23418890	G	A	23418890	3	1	387	1	0	0	0	0	1	0	0	0	9093	1294	45	2	1373	2	LUZP1	1	23418890	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	1802304	23418890	225831731	4	22586											
OPRD1	4985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	29189406	29189406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	29189406	C	T	29189406	3	4	387	1	0	0	0	0	1	0	0	0	10891	768	27	1	740	1	OPRD1	1	29189406	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	5770516	29189406	220061215	5	22587											
EIF2C4	192670	hgsc.bcm.edu;ucsc.edu	37	1	36290935	36290935	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	-	36290935	C	-	36290935	7	5	387	1	0	1	0	1	0	0	0	0	5010	855	30	0	342	0	EIF2C4	1	36290935	Frame_Shift_Del	DEL	C	TCGA-BP-4993-01A-02D-1421-08	7101529	36290935	212959686	6	22588											
NEGR1	257194	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	72748110	72748110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	72748110	C	T	72748110	3	4	387	1	0	0	0	0	1	0	0	0	10324	797	28	2	1024	2	NEGR1	1	72748110	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	36457175	72748110	176502511	7	22589											
WDR63	126820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	85546974	85546974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	85546974	G	A	85546974	3	1	387	1	0	0	0	0	1	0	0	0	17326	1319	46	2	171	2	WDR63	1	85546974	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	12798864	85546974	163703647	8	22590											
CDC14A	8556	broad.mit.edu	37	1	100964716	100964716	+	Silent	SNP	A	T	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	100964716	T	T	100964716	2	4	387	1	0	0	0	0	0	0	0	1	3058	175	7	5		5	CDC14A	1	100964716	Silent	SNP	A	TCGA-BP-4993-01A-02D-1421-08	15417742	100964716	148285905	9	22591											
PRPF3	9129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150310685	150310685	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	G	150310685	C	G	150310685	3	3	387	1	0	0	0	0	1	0	0	0	12575	478	17	4	1111	4	PRPF3	1	150310685	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	49345969	150310685	98939936	10	22592											
ATP1A2	477	broad.mit.edu;ucsc.edu	37	1	160093040	160093040	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	160093040	T	T	160093040	3	4	387	1	0	0	0	0	1	0	0	0	1129	1058	37	4	229	4	ATP1A2	1	160093040	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	9782355	160093040	89157581	11	22593											
ZNF672	79894	broad.mit.edu;hgsc.bcm.edu	37	1	249142695	249142695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	249142695	C	A	249142695	3	1	387	1	0	0	0	0	1	0	0	0	18091	652	23	4	1224	4	ZNF672	1	249142695	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	89049655	249142695	107926	12	22594											
ADCY3	109	hgsc.bcm.edu	37	2	25061418	25061419	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	G	25061419	-	G	25061418	7	5	387	1	0	1	1	0	0	0	0	0	295	1580	55	0	2065	0	ADCY3	2	25061418	Frame_Shift_Ins	INS	-	TCGA-BP-4993-01A-02D-1421-08		25061418	218137955	13	22595											
TET3	200424	hgsc.bcm.edu;ucsc.edu	37	2	74328262	74328263	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	74328263	-	A	74328262	7	5	387	1	0	1	1	0	0	0	0	0	15783	1509	53	0	3976	0	TET3	2	74328262	Frame_Shift_Ins	INS	-	TCGA-BP-4993-01A-02D-1421-08	49266844	74328262	168871111	14	22596											
RANBP2	5903	broad.mit.edu;hgsc.bcm.edu	37	2	109365421	109365421	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	109365421	A	C	109365421	3	2	387	1	0	0	0	0	1	0	0	0	13041	14	1	5	1143	5	RANBP2	2	109365421	Missense_Mutation	SNP	A	TCGA-BP-4993-01A-02D-1421-08	35037159	109365421	133833952	15	22597											
AGXT	189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	241808356	241808356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	241808356	T	C	241808356	3	2	387	1	0	0	0	0	1	0	0	0	404	1580	55	3	76	3	AGXT	2	241808356	Missense_Mutation	SNP	T	TCGA-BP-4993-01A-02D-1421-08	132442935	241808356	1391017	16	22598											
ANO10	55129	broad.mit.edu	37	3	43474215	43474215	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	43474215	A	A	43474215	3	1	387	1	0	0	0	0	1	0	0	0	696	1319	46	2	188	2	ANO10	3	43474215	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08		43474215	154548215	17	22599											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643348	52643348	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	52643348	G	A	52643348	4	1	387	1	0	0	0	0	0	1	0	0	11498	1153	40	1	2412	1	PBRM1	3	52643348	Nonsense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	9169133	52643348	145379082	18	22600											
ADCY5	111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	123005537	123005537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	123005537	T	C	123005537	3	2	387	1	0	0	0	0	1	0	0	0	297	1464	51	3	141	3	ADCY5	3	123005537	Missense_Mutation	SNP	T	TCGA-BP-4993-01A-02D-1421-08	70362189	123005537	75016893	19	22601											
C4orf14	0	hgsc.bcm.edu	37	4	57842813	57842813	+	Silent	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	57842813	C	T	57842813	2	4	387	1	0	0	0	0	0	0	0	1	2253	697	25	2		2	C4orf14	4	57842813	Silent	SNP	C	TCGA-BP-4993-01A-02D-1421-08		57842813	133311463	20	22602											
PDHA2	5161	hgsc.bcm.edu	37	4	96761930	96761949	+	Frame_Shift_Del	DEL	CTTTATGGAAATTACCTTGT	CTTTATGGAAATTACCTTGT	-	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	CTTTATGGAAATTACCTTGT	CTTTATGGAAATTACCTTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	-	96761949	CTTTATGGAAATTACCTTGT	-	96761930	7	5	387	1	0	1	0	1	0	0	0	0	11672	797	28	0	631	0	PDHA2	4	96761930	Frame_Shift_Del	DEL	CTTTATGGAAATTACCTTGT	TCGA-BP-4993-01A-02D-1421-08	38919117	96761930	94392346	21	22603											
PCDH10	57575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	134071517	134071517	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	134071517	C	A	134071517	4	1	387	1	0	0	0	0	0	1	0	0	11514	547	19	4	224	4	PCDH10	4	134071517	Nonsense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	37309587	134071517	57082759	22	22604											
MAML3	55534	hgsc.bcm.edu;ucsc.edu	37	4	140641167	140641167	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	-	140641167	A	-	140641167	7	5	387	1	0	1	0	1	0	0	0	0	9214	117	5	0	693	0	MAML3	4	140641167	Frame_Shift_Del	DEL	A	TCGA-BP-4993-01A-02D-1421-08	6569650	140641167	50513109	23	22605											
CLCN3	1182	hgsc.bcm.edu;ucsc.edu	37	4	170618812	170618815	+	Frame_Shift_Del	DEL	ATTC	ATTC	-	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	ATTC	ATTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	-	170618815	ATTC	-	170618812	7	5	387	1	0	1	0	1	0	0	0	0	3466	449	16	0	1520	0	CLCN3	4	170618812	Frame_Shift_Del	DEL	ATTC	TCGA-BP-4993-01A-02D-1421-08	29977645	170618812	20535464	24	22606											
MCCC2	64087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	70930789	70930789	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	G	70930789	C	G	70930789	3	3	387	1	0	0	0	0	1	0	0	0	9382	594	21	4	857	4	MCCC2	5	70930789	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08		70930789	109984471	25	22607											
SFXN1	94081	hgsc.bcm.edu;ucsc.edu	37	5	174940584	174940584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	174940584	C	T	174940584	3	4	387	1	0	0	0	0	1	0	0	0	14207	623	22	2	737	2	SFXN1	5	174940584	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	104009795	174940584	5974676	26	22608											
SYNCRIP	10492	broad.mit.edu;hgsc.bcm.edu	37	6	86324828	86324828	+	Silent	SNP	A	A	G	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	G	86324828	A	G	86324828	2	3	387	1	0	0	0	0	0	0	0	1	15456	175	7	3		3	SYNCRIP	6	86324828	Silent	SNP	A	TCGA-BP-4993-01A-02D-1421-08		86324828	84790239	27	22609											
OPRM1	4988	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	154412549	154412549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	154412549	G	A	154412549	3	1	387	1	0	0	0	0	1	0	0	0	10894	1145	40	1	1450	1	OPRM1	6	154412549	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	68087721	154412549	16702518	28	22610											
SAMD9	54809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92731889	92731889	+	Silent	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	92731889	C	T	92731889	2	4	387	1	0	0	0	0	0	0	0	1	13839	564	20	2		2	SAMD9	7	92731889	Silent	SNP	C	TCGA-BP-4993-01A-02D-1421-08		92731889	66406774	29	22611											
CNGB3	54714	broad.mit.edu	37	8	87588236	87588236	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	87588236	A	A	87588236	3	1	387	1	0	0	0	0	1	0	0	0	3603	1606	56	5	207	5	CNGB3	8	87588236	Missense_Mutation	SNP	T	TCGA-BP-4993-01A-02D-1421-08		87588236	58775786	30	22612											
LYPD2	137797	broad.mit.edu;hgsc.bcm.edu	37	8	143832568	143832568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	G	143832568	C	G	143832568	3	3	387	1	0	0	0	0	1	0	0	0	9117	536	19	4	306	4	LYPD2	8	143832568	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	56244332	143832568	2531454	31	22613											
C8orf73	0	broad.mit.edu	37	8	144654816	144654816	+	Silent	SNP	T	C	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	144654816	C	C	144654816	2	2	387	1	0	0	0	0	0	0	0	1	2437	1683	59	3		3	C8orf73	8	144654816	Silent	SNP	T	TCGA-BP-4993-01A-02D-1421-08	822248	144654816	1709206	32	22614											
AGTPBP1	23287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	88207597	88207597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	88207597	C	T	88207597	3	4	387	1	0	0	0	0	1	0	0	0	400	565	20	2	1266	2	AGTPBP1	9	88207597	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08		88207597	53005834	33	22615											
SYK	6850	broad.mit.edu;ucsc.edu	37	9	93624627	93624627	+	Splice_Site	SNP	G	A	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	93624627	A	A	93624627	5	1	387	1	0	0	0	0	0	0	1	0	15450	1275	44	2	728	2	SYK	9	93624627	Splice_Site	SNP	G	TCGA-BP-4993-01A-02D-1421-08	5417030	93624627	47588804	34	22616											
SMC2	10592	broad.mit.edu;hgsc.bcm.edu	37	9	106877025	106877025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	106877025	T	C	106877025	3	2	387	1	0	0	0	0	1	0	0	0	14796	1580	55	3	1632	3	SMC2	9	106877025	Missense_Mutation	SNP	T	TCGA-BP-4993-01A-02D-1421-08	13252398	106877025	34336406	35	22617											
FKTN	2218	hgsc.bcm.edu;ucsc.edu	37	9	108377609	108377609	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	-	108377609	A	-	108377609	7	5	387	1	0	1	0	1	0	0	0	0	5926	117	5	0	853	0	FKTN	9	108377609	Frame_Shift_Del	DEL	A	TCGA-BP-4993-01A-02D-1421-08	1500584	108377609	32835822	36	22618											
CAMK1D	57118	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	12595350	12595350	+	Silent	SNP	G	G	T	rs56079552	alternate_allele	TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	12595350	G	T	12595350	2	4	387	1	0	0	0	0	0	0	0	1	2599	1277	45	4		4	CAMK1D	10	12595350	Silent	SNP	G	TCGA-BP-4993-01A-02D-1421-08		12595350	122939397	37	22619											
NOX4	50507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	89075257	89075257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	89075257	A	C	89075257	3	2	387	1	0	0	0	0	1	0	0	0	10565	449	16	5	434	5	NOX4	11	89075257	Missense_Mutation	SNP	A	TCGA-BP-4993-01A-02D-1421-08		89075257	45931259	38	22620											
HEPHL1	341208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	93797666	93797666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	93797666	C	A	93797666	3	1	387	1	0	0	0	0	1	0	0	0	7062	477	17	4	812	4	HEPHL1	11	93797666	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	4722409	93797666	41208850	39	22621											
CD4	920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6923323	6923323	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	6923323	A	T	6923323	3	4	387	1	0	0	0	0	1	0	0	0	3016	101	4	5	240	5	CD4	12	6923323	Missense_Mutation	SNP	A	TCGA-BP-4993-01A-02D-1421-08		6923323	126928572	40	22622											
KLRC2	3822	hgsc.bcm.edu	37	12	10586422	10586422	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	-	10586422	T	-	10586422	7	5	387	1	0	1	0	1	0	0	0	0	8423	1580	55	0	256	0	KLRC2	12	10586422	Frame_Shift_Del	DEL	T	TCGA-BP-4993-01A-02D-1421-08	3663099	10586422	123265473	41	22623											
GPR19	2842	broad.mit.edu;ucsc.edu	37	12	12815272	12815272	+	Silent	SNP	G	A	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	12815272	A	A	12815272	2	1	387	1	0	0	0	0	0	0	0	1	6686	1194	42	2		2	GPR19	12	12815272	Silent	SNP	G	TCGA-BP-4993-01A-02D-1421-08	2228850	12815272	121036623	42	22624											
CS	1431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56668847	56668847	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	56668847	T	A	56668847	3	1	387	1	0	0	0	0	1	0	0	0	3926	1638	57	5	559	5	CS	12	56668847	Missense_Mutation	SNP	T	TCGA-BP-4993-01A-02D-1421-08	43853575	56668847	77183048	43	22625											
C12orf51	0	broad.mit.edu;hgsc.bcm.edu	37	12	112673071	112673071	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	112673071	C	A	112673071	5	1	387	1	0	0	0	0	0	0	1	0	1698	695	24	4	7691	4	C12orf51	12	112673071	Splice_Site	SNP	C	TCGA-BP-4993-01A-02D-1421-08	56004224	112673071	21178824	44	22626											
CIT	11113	broad.mit.edu	37	12	120151395	120151395	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	120151395	A	A	120151395	3	1	387	1	0	0	0	0	1	0	0	0	3440	709	25	4	1904	4	CIT	12	120151395	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	7478324	120151395	13700500	45	22627											
ACOT2	10965	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74036025	74036025	+	Silent	SNP	C	C	G	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	G	74036025	C	G	74036025	2	3	387	1	0	0	0	0	0	0	0	1	152	842	30	4		4	ACOT2	14	74036025	Silent	SNP	C	TCGA-BP-4993-01A-02D-1421-08		74036025	33313515	46	22628											
C14orf148	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	77880341	77880341	+	Silent	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	77880341	C	T	77880341	2	4	387	1	0	0	0	0	0	0	0	1	1753	697	25	2		2	C14orf148	14	77880341	Silent	SNP	C	TCGA-BP-4993-01A-02D-1421-08	3844316	77880341	29469199	47	22629											
RYR3	6263	broad.mit.edu	37	15	34113725	34113725	+	Silent	SNP	T	G	G	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	G	34113725	G	G	34113725	2	3	387	1	0	0	0	0	0	0	0	1	13783	1710	59	5		5	RYR3	15	34113725	Silent	SNP	T	TCGA-BP-4993-01A-02D-1421-08		34113725	68417667	48	22630											
RPAP1	26015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41813028	41813028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	41813028	C	T	41813028	3	4	387	1	0	0	0	0	1	0	0	0	13554	855	30	2	841	2	RPAP1	15	41813028	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	7699303	41813028	60718364	49	22631											
DUOXA1	90527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45412823	45412823	+	Missense_Mutation	SNP	C	C	A	rs147223934	byfrequency;alternate_allele	TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	45412823	C	A	45412823	3	1	387	1	0	0	0	0	1	0	0	0	4804	768	27	4	950	4	DUOXA1	15	45412823	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	3599795	45412823	57118569	50	22632	275	2									
DUOXA1	90527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45412824	45412824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	45412824	G	A	45412824	3	1	387	1	0	0	0	0	1	0	0	0	4804	1116	39	1	951	1	DUOXA1	15	45412824	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	1	45412824	57118568	51	22633	275	2									
CASKIN1	57524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2233883	2233883	+	Silent	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	2233883	G	A	2233883	2	1	387	1	0	0	0	0	0	0	0	1	2668	1020	36	2		2	CASKIN1	16	2233883	Silent	SNP	G	TCGA-BP-4993-01A-02D-1421-08		2233883	88120870	52	22634											
ARHGAP17	55114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	24942263	24942263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	24942263	G	T	24942263	3	4	387	1	0	0	0	0	1	0	0	0	867	1029	36	4	296	4	ARHGAP17	16	24942263	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	22708380	24942263	65412490	53	22635											
TOX3	27324	hgsc.bcm.edu	37	16	52478206	52478206	+	Silent	SNP	C	C	T	rs3743796	bycluster;byfrequency;by1000genomes	TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	52478206	C	T	52478206	2	4	387	1	0	0	0	0	0	0	0	1	16391	622	22	2		2	TOX3	16	52478206	Silent	SNP	C	TCGA-BP-4993-01A-02D-1421-08	27535943	52478206	37876547	54	22636	276	2									
TOX3	27324	hgsc.bcm.edu	37	16	52478215	52478215	+	Silent	SNP	C	C	T	rs3743797	bycluster;byfrequency;by1000genomes	TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	52478215	C	T	52478215	2	4	387	1	0	0	0	0	0	0	0	1	16391	639	23	1		1	TOX3	16	52478215	Silent	SNP	C	TCGA-BP-4993-01A-02D-1421-08	9	52478215	37876538	55	22637	276	2									
CHD9	80205	broad.mit.edu	37	16	53308192	53308192	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	G	G	G	G	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	53308192	A	A	53308192	3	1	387	1	0	0	0	0	1	0	0	0	3334	1029	36	2	5035	2	CHD9	16	53308192	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	829977	53308192	37046561	56	22638											
THAP11	57215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67877045	67877045	+	Silent	SNP	T	T	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	67877045	T	C	67877045	2	2	387	1	0	0	0	0	0	0	0	1	15855	1809	63	3		3	THAP11	16	67877045	Silent	SNP	T	TCGA-BP-4993-01A-02D-1421-08	14568853	67877045	22477708	57	22639											
FXR2	9513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7508978	7508978	+	Silent	SNP	T	T	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	7508978	T	C	7508978	2	2	387	1	0	0	0	0	0	0	0	1	6123	1606	56	3		3	FXR2	17	7508978	Silent	SNP	T	TCGA-BP-4993-01A-02D-1421-08		7508978	73686232	58	22640											
SLFN5	162394	broad.mit.edu;hgsc.bcm.edu	37	17	33585670	33585670	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	33585670	G	A	33585670	5	1	387	1	0	0	0	0	0	0	1	0	14750	1188	41	2		2	SLFN5	17	33585670	Splice_Site	SNP	G	TCGA-BP-4993-01A-02D-1421-08	26076692	33585670	47609540	59	22641											
LHX1	3975	broad.mit.edu	37	17	35299577	35299577	+	Silent	SNP	C	T	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	35299577	T	T	35299577	2	4	387	1	0	0	0	0	0	0	0	1	8777	854	30	2		2	LHX1	17	35299577	Silent	SNP	C	TCGA-BP-4993-01A-02D-1421-08	1713907	35299577	45895633	60	22642											
ITGA3	3675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48148238	48148238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	48148238	G	T	48148238	3	4	387	1	0	0	0	0	1	0	0	0	7884	1357	47	4	713	4	ITGA3	17	48148238	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	12848661	48148238	33046972	61	22643											
MARCH10	162333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	60802312	60802312	+	Silent	SNP	C	C	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	60802312	C	A	60802312	2	1	387	1	0	0	0	0	0	0	0	1	9306	813	29	4		4	MARCH10	17	60802312	Silent	SNP	C	TCGA-BP-4993-01A-02D-1421-08	12654074	60802312	20392898	62	22644											
DDX5	1655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62496043	62496043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	G	62496043	A	G	62496043	3	3	387	1	0	0	0	0	1	0	0	0	4369	462	16	3	5	3	DDX5	17	62496043	Missense_Mutation	SNP	A	TCGA-BP-4993-01A-02D-1421-08	1693731	62496043	18699167	63	22645											
RIOK3	8780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	21059323	21059323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	21059323	G	A	21059323	3	1	387	1	0	0	0	0	1	0	0	0	13392	943	33	2	1433	2	RIOK3	18	21059323	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08		21059323	57017925	64	22646											
ZNF532	55205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	56587466	56587466	+	Silent	SNP	T	T	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	56587466	T	C	56587466	2	2	387	1	0	0	0	0	0	0	0	1	17984	1644	57	3		3	ZNF532	18	56587466	Silent	SNP	T	TCGA-BP-4993-01A-02D-1421-08	35528143	56587466	21489782	65	22647											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9076252	9076252	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	9076252	A	T	9076252	3	4	387	1	0	0	0	0	1	0	0	0	9980	246	9	5	32657	5	MUC16	19	9076252	Missense_Mutation	SNP	A	TCGA-BP-4993-01A-02D-1421-08		9076252	50052731	66	22648											
LRFN3	79414	broad.mit.edu	37	19	36435683	36435683	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	36435683	A	A	36435683	4	1	387	1	0	0	0	0	0	1	0	0	8946	893	31	4	1655	4	LRFN3	19	36435683	Nonsense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08	27359431	36435683	22693300	67	22649											
ZFP112	7771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44833609	44833609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	G	44833609	A	G	44833609	3	3	387	1	0	0	0	0	1	0	0	0	17650	333	12	3	2026	3	ZFP112	19	44833609	Missense_Mutation	SNP	A	TCGA-BP-4993-01A-02D-1421-08	8397926	44833609	14295374	68	22650											
CCDC8	83987	hgsc.bcm.edu	37	19	46914620	46914620	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	-	46914620	G	-	46914620	7	5	387	1	0	1	0	1	0	0	0	0	2855	1000	35	0	172	0	CCDC8	19	46914620	Frame_Shift_Del	DEL	G	TCGA-BP-4993-01A-02D-1421-08	2081011	46914620	12214363	69	22651											
NLRP7	199713	broad.mit.edu;hgsc.bcm.edu	37	19	55450880	55450880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	55450880	T	C	55450880	3	2	387	1	0	0	0	0	1	0	0	0	10489	1783	62	3	1838	3	NLRP7	19	55450880	Missense_Mutation	SNP	T	TCGA-BP-4993-01A-02D-1421-08	8536260	55450880	3678103	70	22652											
PANK2	80025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3899360	3899360	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	3899360	A	C	3899360	3	2	387	1	0	0	0	0	1	0	0	0	11424	362	13	5	1601	5	PANK2	20	3899360	Missense_Mutation	SNP	A	TCGA-BP-4993-01A-02D-1421-08		3899360	59126160	71	22653											
SMOX	54498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	4164251	4164251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	4164251	G	A	4164251	3	1	387	1	0	0	0	0	1	0	0	0	14816	1377	48	2	1498	2	SMOX	20	4164251	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	264891	4164251	58861269	72	22654											
PAK7	57144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	9520140	9520140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	9520140	A	T	9520140	3	4	387	1	0	0	0	0	1	0	0	0	11412	275	10	5	34	5	PAK7	20	9520140	Missense_Mutation	SNP	A	TCGA-BP-4993-01A-02D-1421-08	5355889	9520140	53505380	73	22655											
DEFB116	245930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	29891069	29891069	+	Silent	SNP	G	G	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	29891069	G	A	29891069	2	1	387	1	0	0	0	0	0	0	0	1	4407	1140	40	1		1	DEFB116	20	29891069	Silent	SNP	G	TCGA-BP-4993-01A-02D-1421-08	20370929	29891069	33134451	74	22656											
MCM3AP	8888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47692476	47692476	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	A	47692476	T	A	47692476	4	1	387	1	0	0	0	0	0	1	0	0	9395	1623	56	5	3562	5	MCM3AP	21	47692476	Nonsense_Mutation	SNP	T	TCGA-BP-4993-01A-02D-1421-08		47692476	437419	75	22657											
MN1	4330	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	28192794	28192794	+	Silent	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	28192794	C	T	28192794	2	4	387	1	0	0	0	0	0	0	0	1	9680	755	27	1		1	MN1	22	28192794	Silent	SNP	C	TCGA-BP-4993-01A-02D-1421-08		28192794	23111772	76	22658											
MAP7D3	79649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135314179	135314179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	T	135314179	C	T	135314179	3	4	387	1	0	0	0	0	1	0	0	0	9276	565	20	2	1737	2	MAP7D3	23	135314179	Missense_Mutation	SNP	C	TCGA-BP-4993-01A-02D-1421-08		135314179	19956381	77	22659											
MAGEC1	9947	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	140993825	140993825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4993-01A-02D-1421-08	TCGA-BP-4993-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34315bea-6ef2-42ec-b17e-c73eed40647f	e592ee8d-8949-4639-a397-3035c7ab07ad	C	140993825	G	C	140993825	3	2	387	1	0	0	0	0	1	0	0	0	9187	1029	36	4	641	4	MAGEC1	23	140993825	Missense_Mutation	SNP	G	TCGA-BP-4993-01A-02D-1421-08	5679646	140993825	14276735	78	22660											
ATP1A1	476	broad.mit.edu	37	1	116939279	116939281	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	-	116939281	CAT	-	116939279	7	5	388	1	0	1	0	1	0	0	0	0	1128	697	25	0	1966	0	ATP1A1	1	116939279	In_Frame_Del	DEL	CAT	TCGA-BP-4994-01A-01D-1462-08		116939279	132311342	1	22661											
MRPL9	65005	broad.mit.edu	37	1	151735551	151735551	+	Silent	SNP	C	C	T			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	T	151735551	C	T	151735551	2	4	388	1	0	0	0	0	0	0	0	1	9827	726	26	2		2	MRPL9	1	151735551	Silent	SNP	C	TCGA-BP-4994-01A-01D-1462-08	34796272	151735551	97515070	2	22662											
FCRLB	127943	broad.mit.edu	37	1	161695855	161695855	+	Silent	SNP	T	T	C			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	C	161695855	T	C	161695855	2	2	388	1	0	0	0	0	0	0	0	1	5808	1509	53	3		3	FCRLB	1	161695855	Silent	SNP	T	TCGA-BP-4994-01A-01D-1462-08	9960304	161695855	87554766	3	22663											
CYP1B1	1545	broad.mit.edu	37	2	38297920	38297920	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	38297920	A	G	38297920	3	3	388	1	0	0	0	0	1	0	0	0	4153	217	8	3	58	3	CYP1B1	2	38297920	Missense_Mutation	SNP	A	TCGA-BP-4994-01A-01D-1462-08		38297920	204901453	4	22664											
ATG7	10533	broad.mit.edu	37	3	11383734	11383734	+	Missense_Mutation	SNP	A	A	G	rs149127802		TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	11383734	A	G	11383734	3	3	388	1	0	0	0	0	1	0	0	0	1101	101	4	3	1144	3	ATG7	3	11383734	Missense_Mutation	SNP	A	TCGA-BP-4994-01A-01D-1462-08		11383734	186638696	5	22665											
MST1R	4486	broad.mit.edu	37	3	49924839	49924839	+	Silent	SNP	C	C	G			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	49924839	C	G	49924839	2	3	388	1	0	0	0	0	0	0	0	1	9898	755	27	4		4	MST1R	3	49924839	Silent	SNP	C	TCGA-BP-4994-01A-01D-1462-08	38541105	49924839	148097591	6	22666											
DTX3L	151636	broad.mit.edu	37	3	122289368	122289371	+	Frame_Shift_Del	DEL	AAGG	AAGG	-	rs9868175	byFrequency	TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	-	122289371	AAGG	-	122289368	7	5	388	1	0	1	0	1	0	0	0	0	4798	363	13	0	2016	0	DTX3L	3	122289368	Frame_Shift_Del	DEL	AAGG	TCGA-BP-4994-01A-01D-1462-08	72364529	122289368	75733062	7	22667											
RUFY3	22902	broad.mit.edu	37	4	71634338	71634338	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	T	71634338	A	T	71634338	3	4	388	1	0	0	0	0	1	0	0	0	13753	333	12	5	1036	5	RUFY3	4	71634338	Missense_Mutation	SNP	A	TCGA-BP-4994-01A-01D-1462-08		71634338	119519938	8	22668											
GFM2	84340	broad.mit.edu	37	5	74021464	74021464	+	Splice_Site	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	74021464	C	A	74021464	5	1	388	1	0	0	0	0	0	0	1	0	6349	521	18	4	322	4	GFM2	5	74021464	Splice_Site	SNP	C	TCGA-BP-4994-01A-01D-1462-08		74021464	106893796	9	22669											
PCDHA10	56139	broad.mit.edu	37	5	140236489	140236489	+	Missense_Mutation	SNP	C	C	G			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	140236489	C	G	140236489	3	3	388	1	0	0	0	0	1	0	0	0	11527	507	18	4	858	4	PCDHA10	5	140236489	Missense_Mutation	SNP	C	TCGA-BP-4994-01A-01D-1462-08	66215025	140236489	40678771	10	22670											
PCDHA9	9752	broad.mit.edu	37	5	140362135	140362135	+	Silent	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	140362135	C	A	140362135	2	1	388	1	0	0	0	0	0	0	0	1	11538	581	21	4		4	PCDHA9	5	140362135	Silent	SNP	C	TCGA-BP-4994-01A-01D-1462-08	125646	140362135	40553125	11	22671											
DOPEY1	23033	broad.mit.edu	37	6	83845475	83845475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	-	83845475	A	-	83845475	7	5	388	1	0	1	0	1	0	0	0	0	4709	217	8	0	3078	0	DOPEY1	6	83845475	Frame_Shift_Del	DEL	A	TCGA-BP-4994-01A-01D-1462-08		83845475	87269592	12	22672											
CARD11	84433	broad.mit.edu	37	7	2977611	2977611	+	Missense_Mutation	SNP	C	C	G			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	2977611	C	G	2977611	3	3	388	1	0	0	0	0	1	0	0	0	2647	478	17	4	2463	4	CARD11	7	2977611	Missense_Mutation	SNP	C	TCGA-BP-4994-01A-01D-1462-08		2977611	156161052	13	22673											
ELMO1	9844	broad.mit.edu	37	7	37382282	37382282	+	Missense_Mutation	SNP	C	C	T	rs146510671		TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	T	37382282	C	T	37382282	3	4	388	1	0	0	0	0	1	0	0	0	5067	768	27	1	2254	1	ELMO1	7	37382282	Missense_Mutation	SNP	C	TCGA-BP-4994-01A-01D-1462-08	34404671	37382282	121756381	14	22674											
ABCA1	19	broad.mit.edu	37	9	107581907	107581907	+	Silent	SNP	G	G	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	107581907	G	A	107581907	2	1	388	1	0	0	0	0	0	0	0	1	28	1219	43	2		2	ABCA1	9	107581907	Silent	SNP	G	TCGA-BP-4994-01A-01D-1462-08		107581907	33631524	15	22675											
ATP6V1G1	9550	broad.mit.edu	37	9	117354865	117354865	+	Missense_Mutation	SNP	A	A	C	rs72752535	byFrequency	TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	C	117354865	A	C	117354865	3	2	388	1	0	0	0	0	1	0	0	0	1186	246	9	5	122	5	ATP6V1G1	9	117354865	Missense_Mutation	SNP	A	TCGA-BP-4994-01A-01D-1462-08	9772958	117354865	23858566	16	22676											
CACNA1B	774	broad.mit.edu	37	9	140809200	140809200	+	Silent	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	140809200	C	A	140809200	2	1	388	1	0	0	0	0	0	0	0	1	2541	816	29	4		4	CACNA1B	9	140809200	Silent	SNP	C	TCGA-BP-4994-01A-01D-1462-08	23454335	140809200	404231	17	22677											
SLK	9748	broad.mit.edu	37	10	105780244	105780244	+	Splice_Site	SNP	A	A	G			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	105780244	A	G	105780244	5	3	388	1	0	0	0	0	0	0	1	0	14761	434	15	3	3386	3	SLK	10	105780244	Splice_Site	SNP	A	TCGA-BP-4994-01A-01D-1462-08		105780244	29754503	18	22678											
MOB2	81532	broad.mit.edu	37	11	1491713	1491713	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	1491713	C	A	1491713	4	1	388	1	0	0	0	0	0	1	0	0	9688	922	32	4	314	4	MOB2	11	1491713	Nonsense_Mutation	SNP	C	TCGA-BP-4994-01A-01D-1462-08		1491713	133514803	19	22679											
SYT8	90019	broad.mit.edu	37	11	1858203	1858203	+	Silent	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	1858203	C	A	1858203	2	1	388	1	0	0	0	0	0	0	0	1	15492	842	30	4		4	SYT8	11	1858203	Silent	SNP	C	TCGA-BP-4994-01A-01D-1462-08	366490	1858203	133148313	20	22680											
PLCZ1	89869	broad.mit.edu	37	12	18858244	18858244	+	Silent	SNP	A	A	T			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	T	18858244	A	T	18858244	2	4	388	1	0	0	0	0	0	0	0	1	12051	175	7	5		5	PLCZ1	12	18858244	Silent	SNP	A	TCGA-BP-4994-01A-01D-1462-08		18858244	114993651	21	22681											
ADAMTS20	80070	broad.mit.edu	37	12	43771210	43771210	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	T	43771210	G	T	43771210	3	4	388	1	0	0	0	0	1	0	0	0	266	962	34	4	810	4	ADAMTS20	12	43771210	Missense_Mutation	SNP	G	TCGA-BP-4994-01A-01D-1462-08	24912966	43771210	90080685	22	22682											
PIP4K2C	79837	broad.mit.edu	37	12	57995053	57995053	+	Silent	SNP	C	C	T			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	T	57995053	C	T	57995053	2	4	388	1	0	0	0	0	0	0	0	1	11945	825	29	2		2	PIP4K2C	12	57995053	Silent	SNP	C	TCGA-BP-4994-01A-01D-1462-08	14223843	57995053	75856842	23	22683											
NIN	51199	broad.mit.edu	37	14	51237587	51237587	+	Silent	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	51237587	C	A	51237587	2	1	388	1	0	0	0	0	0	0	0	1	10424	842	30	4		4	NIN	14	51237587	Silent	SNP	C	TCGA-BP-4994-01A-01D-1462-08		51237587	56111953	24	22684											
ZKSCAN2	342357	broad.mit.edu	37	16	25268247	25268247	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	25268247	C	A	25268247	4	1	388	1	0	0	0	0	0	1	0	0	17699	864	30	4	2729	4	ZKSCAN2	16	25268247	Nonsense_Mutation	SNP	C	TCGA-BP-4994-01A-01D-1462-08		25268247	65086506	25	22685											
CDH8	1006	broad.mit.edu	37	16	61935267	61935267	+	Silent	SNP	T	T	G			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	61935267	T	G	61935267	2	3	388	1	0	0	0	0	0	0	0	1	3118	1744	61	5		5	CDH8	16	61935267	Silent	SNP	T	TCGA-BP-4994-01A-01D-1462-08	36667020	61935267	28419486	26	22686											
PLCG2	5336	broad.mit.edu	37	16	81944242	81944242	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	-	81944242	C	-	81944242	7	5	388	1	0	1	0	1	0	0	0	0	12043	518	18	0	1917	0	PLCG2	16	81944242	Frame_Shift_Del	DEL	C	TCGA-BP-4994-01A-01D-1462-08	20008975	81944242	8410511	27	22687											
PFAS	5198	broad.mit.edu	37	17	8169634	8169634	+	Silent	SNP	C	C	T			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	T	8169634	C	T	8169634	2	4	388	1	0	0	0	0	0	0	0	1	11761	776	27	1		1	PFAS	17	8169634	Silent	SNP	C	TCGA-BP-4994-01A-01D-1462-08		8169634	73025576	28	22688											
TBCD	6904	broad.mit.edu	37	17	80772758	80772758	+	Silent	SNP	G	G	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	80772758	G	A	80772758	2	1	388	1	0	0	0	0	0	0	0	1	15645	1074	38	1		1	TBCD	17	80772758	Silent	SNP	G	TCGA-BP-4994-01A-01D-1462-08	72603124	80772758	422452	29	22689											
POLI	11201	broad.mit.edu	37	18	51820612	51820612	+	Silent	SNP	A	A	G			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	51820612	A	G	51820612	2	3	388	1	0	0	0	0	0	0	0	1	12210	40	2	3		3	POLI	18	51820612	Silent	SNP	A	TCGA-BP-4994-01A-01D-1462-08		51820612	26256636	30	22690											
TSHZ1	10194	broad.mit.edu	37	18	72999255	72999255	+	Silent	SNP	G	G	A	rs145239521		TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	72999255	G	A	72999255	2	1	388	1	0	0	0	0	0	0	0	1	16635	1074	38	1		1	TSHZ1	18	72999255	Silent	SNP	G	TCGA-BP-4994-01A-01D-1462-08	21178643	72999255	5077993	31	22691											
FBN3	84467	broad.mit.edu	37	19	8188389	8188389	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	T	8188389	G	T	8188389	3	4	388	1	0	0	0	0	1	0	0	0	5711	1087	38	4	5552	4	FBN3	19	8188389	Missense_Mutation	SNP	G	TCGA-BP-4994-01A-01D-1462-08		8188389	50940594	32	22692											
ZNF45	7596	broad.mit.edu	37	19	44417765	44417765	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	44417765	C	A	44417765	3	1	388	1	0	0	0	0	1	0	0	0	17933	855	30	4	229	4	ZNF45	19	44417765	Missense_Mutation	SNP	C	TCGA-BP-4994-01A-01D-1462-08	36229376	44417765	14711218	33	22693											
ZNF766	90321	broad.mit.edu	37	19	52786650	52786650	+	Missense_Mutation	SNP	C	C	G			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	52786650	C	G	52786650	3	3	388	1	0	0	0	0	1	0	0	0	18152	816	29	4	268	4	ZNF766	19	52786650	Missense_Mutation	SNP	C	TCGA-BP-4994-01A-01D-1462-08	8368885	52786650	6342333	34	22694											
LILRB2	10288	broad.mit.edu	37	19	54783387	54783387	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	54783387	C	A	54783387	3	1	388	1	0	0	0	0	1	0	0	0	8798	680	24	4	1365	4	LILRB2	19	54783387	Missense_Mutation	SNP	C	TCGA-BP-4994-01A-01D-1462-08	1996737	54783387	4345596	35	22695											
BRSK1	84446	broad.mit.edu	37	19	55816167	55816167	+	Silent	SNP	G	G	T			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	T	55816167	G	T	55816167	2	4	388	1	0	0	0	0	0	0	0	1	1525	1103	39	4		4	BRSK1	19	55816167	Silent	SNP	G	TCGA-BP-4994-01A-01D-1462-08	1032780	55816167	3312816	36	22696											
CHD6	84181	broad.mit.edu	37	20	40080534	40080535	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	-	40080535	TT	-	40080534	7	5	388	1	0	1	0	1	0	0	0	0	3331	1609	56	0	4756	0	CHD6	20	40080534	Frame_Shift_Del	DEL	TT	TCGA-BP-4994-01A-01D-1462-08		40080534	22944986	37	22697											
BTG3	10950	broad.mit.edu	37	21	18977201	18977201	+	Silent	SNP	C	C	A			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	A	18977201	C	A	18977201	2	1	388	1	0	0	0	0	0	0	0	1	1557	581	21	4		4	BTG3	21	18977201	Silent	SNP	C	TCGA-BP-4994-01A-01D-1462-08		18977201	29152694	38	22698											
ATP7A	538	broad.mit.edu	37	X	77244942	77244942	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4994-01A-01D-1462-08	TCGA-BP-4994-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba489617-cdc3-4e57-9400-1b3ef1d31b31	52c6f47a-69a1-4f55-9cda-c77e7c6e50c7	G	77244942	A	G	77244942	3	3	388	1	0	0	0	0	1	0	0	0	1190	101	4	3	834	3	ATP7A	23	77244942	Missense_Mutation	SNP	A	TCGA-BP-4994-01A-01D-1462-08		77244942	78025618	39	22699											
LRP8	7804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	53741419	53741419	+	Missense_Mutation	SNP	C	C	T	rs149347479		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	53741419	C	T	53741419	3	4	389	1	0	0	0	0	1	0	0	0	8970	739	26	2	2057	2	LRP8	1	53741419	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08		53741419	195509202	1	22700											
PTGFR	5737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78958841	78958841	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	G	78958841	C	G	78958841	3	3	389	1	0	0	0	0	1	0	0	0	12760	478	17	4	415	4	PTGFR	1	78958841	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08	25217422	78958841	170291780	2	22701											
UBE2Q1	55585	broad.mit.edu;ucsc.edu	37	1	154522941	154522941	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	154522941	T	T	154522941	4	4	389	1	0	0	0	0	0	1	0	0	16881	508	18	2	30	2	UBE2Q1	1	154522941	Nonsense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08	75564100	154522941	94727680	3	22702											
LY9	4063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160769615	160769615	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	G	160769615	C	G	160769615	3	3	389	1	0	0	0	0	1	0	0	0	9108	623	22	4	203	4	LY9	1	160769615	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08	6246674	160769615	88481006	4	22703											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201009799	201009799	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	201009799	A	T	201009799	3	4	389	1	0	0	0	0	1	0	0	0	2549	188	7	5	456	5	CACNA1S	1	201009799	Missense_Mutation	SNP	A	TCGA-BP-4995-01A-01D-1462-08	40240184	201009799	48240822	5	22704											
CDC42BPA	8476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	227227835	227227835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	227227835	C	A	227227835	4	1	389	1	0	0	0	0	0	1	0	0	3074	835	29	4	2124	4	CDC42BPA	1	227227835	Nonsense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08	26218036	227227835	22022786	6	22705											
ACTN2	88	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	236924371	236924371	+	Silent	SNP	C	C	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	236924371	C	A	236924371	2	1	389	1	0	0	0	0	0	0	0	1	205	639	23	4		4	ACTN2	1	236924371	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08	9696536	236924371	12326250	7	22706											
RSAD2	91543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	7023597	7023597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	7023597	C	T	7023597	3	4	389	1	0	0	0	0	1	0	0	0	13708	759	27	1	448	1	RSAD2	2	7023597	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08		7023597	236175776	8	22707											
UGGT1	56886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128927889	128927889	+	Silent	SNP	G	G	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	128927889	G	T	128927889	2	4	389	1	0	0	0	0	0	0	0	1	16953	1219	43	4		4	UGGT1	2	128927889	Silent	SNP	G	TCGA-BP-4995-01A-01D-1462-08	121904292	128927889	114271484	9	22708											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179454614	179454614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	179454614	T	A	179454614	3	1	389	1	0	0	0	0	1	0	0	0	16747	1580	55	5	46377	5	TTN	2	179454614	Missense_Mutation	SNP	T	TCGA-BP-4995-01A-01D-1462-08	50526725	179454614	63744759	10	22709											
PIKFYVE	200576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	209169642	209169642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	209169642	C	A	209169642	3	1	389	1	0	0	0	0	1	0	0	0	11931	913	32	4	1583	4	PIKFYVE	2	209169642	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08	29715028	209169642	34029731	11	22710											
VHL	7428	broad.mit.edu	37	3	10183734	10183734	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina GAIIx	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	10183734	A	A	10183734	4	1	389	1	0	0	0	0	0	1	0	0	17174	893	31	4	205	4	VHL	3	10183734	Nonsense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08		10183734	187838696	12	22711											
OXSM	54995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	25832713	25832713	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	C	25832713	G	C	25832713	3	2	389	1	0	0	0	0	1	0	0	0	11342	1117	39	4	204	4	OXSM	3	25832713	Missense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08	15648979	25832713	172189717	13	22712											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52620685	52620685	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	C	52620685	G	C	52620685	3	2	389	1	0	0	0	0	1	0	0	0	11498	1348	47	4	1801	4	PBRM1	3	52620685	Missense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08	26787972	52620685	145401745	14	22713											
COL6A6	131873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130289957	130289957	+	Silent	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	130289957	C	T	130289957	2	4	389	1	0	0	0	0	0	0	0	1	3705	825	29	2		2	COL6A6	3	130289957	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08	77669272	130289957	67732473	15	22714											
NCEH1	57552	broad.mit.edu;hgsc.bcm.edu	37	3	172365895	172365895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	172365895	T	A	172365895	3	1	389	1	0	0	0	0	1	0	0	0	10222	1435	50	5	1118	5	NCEH1	3	172365895	Missense_Mutation	SNP	T	TCGA-BP-4995-01A-01D-1462-08	42075938	172365895	25656535	16	22715											
TEC	100124696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	48147523	48147523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	48147523	C	A	48147523	3	1	389	1	0	0	0	0	1	0	0	0	15754	738	26	4	764	4	TEC	4	48147523	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08		48147523	143006753	17	22716											
ANK2	287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	114277953	114277953	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	114277953	C	T	114277953	4	4	389	1	0	0	0	0	0	1	0	0	621	827	29	2	8394	2	ANK2	4	114277953	Nonsense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08	66130430	114277953	76876323	18	22717											
TLR2	7097	hgsc.bcm.edu	37	4	154626180	154626188	+	In_Frame_Del	DEL	TGTGAAGAG	TGTGAAGAG	-	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	TGTGAAGAG	TGTGAAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	-	154626188	TGTGAAGAG	-	154626180	7	5	389	1	0	1	0	1	0	0	0	0	15963	1809	63	0	2123	0	TLR2	4	154626180	In_Frame_Del	DEL	TGTGAAGAG	TCGA-BP-4995-01A-01D-1462-08	40348227	154626180	36528096	19	22718											
DCHS2	54798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	155253991	155253991	+	Silent	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	155253991	C	T	155253991	2	4	389	1	0	0	0	0	0	0	0	1	4290	755	27	1		1	DCHS2	4	155253991	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08	627811	155253991	35900285	20	22719											
PCDHA5	56143	hgsc.bcm.edu	37	5	140202821	140202821	+	Silent	SNP	C	C	G	rs80008076	bycluster;byfrequency;by1000genomes	TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	G	140202821	C	G	140202821	2	3	389	1	0	0	0	0	0	0	0	1	11534	610	22	4		4	PCDHA5	5	140202821	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08		140202821	40712439	21	22720											
PCDHB7	56129	broad.mit.edu;hgsc.bcm.edu	37	5	140553991	140553991	+	Silent	SNP	G	G	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	140553991	G	A	140553991	2	1	389	1	0	0	0	0	0	0	0	1	11554	991	35	2		2	PCDHB7	5	140553991	Silent	SNP	G	TCGA-BP-4995-01A-01D-1462-08	351170	140553991	40361269	22	22721											
GRK6	2870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176860405	176860405	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	176860405	T	A	176860405	3	1	389	1	0	0	0	0	1	0	0	0	6800	1809	63	5	617	5	GRK6	5	176860405	Missense_Mutation	SNP	T	TCGA-BP-4995-01A-01D-1462-08	36306414	176860405	4054855	23	22722											
RREB1	6239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7231266	7231266	+	Silent	SNP	T	T	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	7231266	T	A	7231266	2	1	389	1	0	0	0	0	0	0	0	1	13692	1538	54	5		5	RREB1	6	7231266	Silent	SNP	T	TCGA-BP-4995-01A-01D-1462-08		7231266	163883801	24	22723											
CYP3A7	1551	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99313483	99313483	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	99313483	C	A	99313483	4	1	389	1	0	0	0	0	0	1	0	0	4183	603	21	4	971	4	CYP3A7	7	99313483	Nonsense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08		99313483	59825180	25	22724											
SPAM1	6677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	123593857	123593857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	123593857	G	A	123593857	3	1	389	1	0	0	0	0	1	0	0	0	14999	971	34	2	235	2	SPAM1	7	123593857	Missense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08	24280374	123593857	35544806	26	22725											
C8orf42	157695	broad.mit.edu	37	8	442623	442623	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	442623	A	A	442623	3	1	389	1	0	0	0	0	1	0	0	0	2430	1174	41	2	227	2	C8orf42	8	442623	Missense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08		442623	145921399	27	22726											
SLC7A2	6542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17412117	17412117	+	Silent	SNP	G	G	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	17412117	G	A	17412117	2	1	389	1	0	0	0	0	0	0	0	1	14710	1103	39	1		1	SLC7A2	8	17412117	Silent	SNP	G	TCGA-BP-4995-01A-01D-1462-08	16969494	17412117	128951905	28	22727											
CHMP7	91782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	23118090	23118090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	C	23118090	A	C	23118090	3	2	389	1	0	0	0	0	1	0	0	0	3363	246	9	5	1378	5	CHMP7	8	23118090	Missense_Mutation	SNP	A	TCGA-BP-4995-01A-01D-1462-08	5705973	23118090	123245932	29	22728											
SVEP1	79987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	113212507	113212507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	C	113212507	T	C	113212507	3	2	389	1	0	0	0	0	1	0	0	0	15432	1580	55	3	6880	3	SVEP1	9	113212507	Missense_Mutation	SNP	T	TCGA-BP-4995-01A-01D-1462-08		113212507	28000924	30	22729											
ZNF438	220929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	31134199	31134199	+	Silent	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	31134199	C	T	31134199	2	4	389	1	0	0	0	0	0	0	0	1	17922	813	29	2		2	ZNF438	10	31134199	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08		31134199	104400548	31	22730											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61815520	61815520	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	61815520	A	T	61815520	3	4	389	1	0	0	0	0	1	0	0	0	622	188	7	5	180	5	ANK3	10	61815520	Missense_Mutation	SNP	A	TCGA-BP-4995-01A-01D-1462-08	30681321	61815520	73719227	32	22731											
DLG5	9231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	79553777	79553777	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	G	79553777	C	G	79553777	3	3	389	1	0	0	0	0	1	0	0	0	4560	681	24	4	122	4	DLG5	10	79553777	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08	17738257	79553777	55980970	33	22732											
FANCF	2188	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	22646844	22646844	+	Silent	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	22646844	C	T	22646844	2	4	389	1	0	0	0	0	0	0	0	1	5674	581	21	2		2	FANCF	11	22646844	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08		22646844	112359672	34	22733											
CHRM4	1132	broad.mit.edu	37	11	46407571	46407571	+	Silent	SNP	C	A	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	46407571	A	A	46407571	2	1	389	1	0	0	0	0	0	0	0	1	3381	639	23	4		4	CHRM4	11	46407571	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08	23760727	46407571	88598945	35	22734											
MTA2	9219	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62366080	62366080	+	Silent	SNP	C	C	G	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	G	62366080	C	G	62366080	2	3	389	1	0	0	0	0	0	0	0	1	9916	610	22	4		4	MTA2	11	62366080	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08	15958509	62366080	72640436	36	22735											
TPCN2	219931	broad.mit.edu	37	11	68853399	68853399	+	Splice_Site	SNP	G	A	A	rs145113932		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	68853399	A	A	68853399	5	1	389	1	0	0	0	0	0	0	1	0	16408	1159	40	1	2090	1	TPCN2	11	68853399	Splice_Site	SNP	G	TCGA-BP-4995-01A-01D-1462-08	6487319	68853399	66153117	37	22736											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92087535	92087535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	92087535	G	A	92087535	3	1	389	1	0	0	0	0	1	0	0	0	5698	1319	46	2	2259	2	FAT3	11	92087535	Missense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08	23234136	92087535	42918981	38	22737											
VEZT	55591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	95694240	95694240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	95694240	C	T	95694240	3	4	389	1	0	0	0	0	1	0	0	0	17168	623	22	2	2177	2	VEZT	12	95694240	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08		95694240	38157655	39	22738											
KIAA0564	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	42440166	42440166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	42440166	C	T	42440166	3	4	389	1	0	0	0	0	1	0	0	0	8192	797	28	2	4642	2	KIAA0564	13	42440166	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08		42440166	72729712	40	22739											
SLC8A3	6547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	70634851	70634851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	70634851	G	A	70634851	3	1	389	1	0	0	0	0	1	0	0	0	14721	1116	39	1	2633	1	SLC8A3	14	70634851	Missense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08		70634851	36714689	41	22740											
AHNAK2	113146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	105418040	105418040	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	105418040	G	A	105418040	4	1	389	1	0	0	0	0	0	1	0	0	415	1328	46	2	13643	2	AHNAK2	14	105418040	Nonsense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08	34783189	105418040	1931500	42	22741											
RAD51	5888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41011016	41011016	+	Missense_Mutation	SNP	G	G	A	rs121917739	bycluster;byfrequency;by1000genomes	TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	41011016	G	A	41011016	3	1	389	1	0	0	0	0	1	0	0	0	12998	1116	39	1	592	1	RAD51	15	41011016	Missense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08		41011016	61520376	43	22742											
PLA2G4D	283748	broad.mit.edu	37	15	42363002	42363002	+	Silent	SNP	G	A	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	42363002	A	A	42363002	2	1	389	1	0	0	0	0	0	0	0	1	12011	1280	45	2		2	PLA2G4D	15	42363002	Silent	SNP	G	TCGA-BP-4995-01A-01D-1462-08	1351986	42363002	60168390	44	22743											
MAP1A	4130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43821933	43821933	+	Silent	SNP	T	T	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	43821933	T	A	43821933	2	1	389	1	0	0	0	0	0	0	0	1	9234	1567	55	5		5	MAP1A	15	43821933	Silent	SNP	T	TCGA-BP-4995-01A-01D-1462-08	1458931	43821933	58709459	45	22744											
NMRAL1	57407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4519369	4519369	+	Silent	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	4519369	C	T	4519369	2	4	389	1	0	0	0	0	0	0	0	1	10508	796	28	2		2	NMRAL1	16	4519369	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08		4519369	85835384	46	22745											
ABCC1	4363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	16108476	16108476	+	Silent	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	16108476	C	T	16108476	2	4	389	1	0	0	0	0	0	0	0	1	49	668	24	2		2	ABCC1	16	16108476	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08	11589107	16108476	74246277	47	22746											
GALNS	2588	broad.mit.edu	37	16	88893182	88893182	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	88893182	A	A	88893182	3	1	389	1	0	0	0	0	1	0	0	0	6213	1145	40	1	521	1	GALNS	16	88893182	Missense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08	72784706	88893182	1461571	48	22747											
DDX5	1655	hgsc.bcm.edu	37	17	62500099	62500102	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	ACAG	ACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	-	62500102	ACAG	-	62500099	7	5	389	1	0	1	0	1	0	0	0	0	4369	405	14	0	1441	0	DDX5	17	62500099	Frame_Shift_Del	DEL	ACAG	TCGA-BP-4995-01A-01D-1462-08		62500099	18695111	49	22748											
ZNF521	25925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	22804557	22804557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	22804557	C	T	22804557	3	4	389	1	0	0	0	0	1	0	0	0	17977	536	19	1	630	1	ZNF521	18	22804557	Missense_Mutation	SNP	C	TCGA-BP-4995-01A-01D-1462-08		22804557	55272691	50	22749											
CDH20	28316	broad.mit.edu;hgsc.bcm.edu	37	18	59221899	59221899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	A	59221899	G	A	59221899	3	1	389	1	0	0	0	0	1	0	0	0	3108	1203	42	2	2419	2	CDH20	18	59221899	Missense_Mutation	SNP	G	TCGA-BP-4995-01A-01D-1462-08	36417342	59221899	18855349	51	22750											
PRMT1	3276	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50185319	50185319	+	Silent	SNP	C	C	T	rs143554083		TCGA-BP-4995-01A-01D-1462-08	TCGA-BP-4995-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93b9afac-e12e-49d2-96ac-274da6581d76	7e603e4c-0053-49f2-b4f3-07daa946fd34	T	50185319	C	T	50185319	2	4	389	1	0	0	0	0	0	0	0	1	12545	874	31	1		1	PRMT1	19	50185319	Silent	SNP	C	TCGA-BP-4995-01A-01D-1462-08		50185319	8943664	52	22751											
CTRC	11330	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	15771156	15771156	+	Silent	SNP	C	C	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	15771156	C	T	15771156	2	4	390	1	0	0	0	0	0	0	0	1	4029	535	19	1		1	CTRC	1	15771156	Silent	SNP	C	TCGA-BP-4998-01A-01D-1462-08		15771156	233479465	1	22752											
IRF2BP2	359948	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	234743247	234743247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	A	234743247	C	A	234743247	3	1	390	1	0	0	0	0	1	0	0	0	7837	913	32	4	367	4	IRF2BP2	1	234743247	Missense_Mutation	SNP	C	TCGA-BP-4998-01A-01D-1462-08	218972091	234743247	14507374	2	22753											
SNX17	9784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27598749	27598749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	27598749	C	T	27598749	3	4	390	1	0	0	0	0	1	0	0	0	14901	643	23	1	1057	1	SNX17	2	27598749	Missense_Mutation	SNP	C	TCGA-BP-4998-01A-01D-1462-08		27598749	215600624	3	22754											
NPHP1	4867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	110919218	110919218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	110919218	C	T	110919218	3	4	390	1	0	0	0	0	1	0	0	0	10586	739	26	2	1161	2	NPHP1	2	110919218	Missense_Mutation	SNP	C	TCGA-BP-4998-01A-01D-1462-08	83320469	110919218	132280155	4	22755											
SLC4A10	57282	broad.mit.edu;hgsc.bcm.edu	37	2	162730485	162730485	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	C	162730485	A	C	162730485	3	2	390	1	0	0	0	0	1	0	0	0	14664	11	1	5	1033	5	SLC4A10	2	162730485	Missense_Mutation	SNP	A	TCGA-BP-4998-01A-01D-1462-08	51811267	162730485	80468888	5	22756											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179598118	179598118	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	179598118	A	T	179598118	4	4	390	1	0	0	0	0	0	1	0	0	16747	131	5	5	88863	5	TTN	2	179598118	Nonsense_Mutation	SNP	A	TCGA-BP-4998-01A-01D-1462-08	16867633	179598118	63601255	6	22757											
WNT10A	80326	hgsc.bcm.edu	37	2	219746998	219746998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	219746998	C	T	219746998	3	4	390	1	0	0	0	0	1	0	0	0	17394	768	27	1	235	1	WNT10A	2	219746998	Missense_Mutation	SNP	C	TCGA-BP-4998-01A-01D-1462-08	40148880	219746998	23452375	7	22758											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188315	10188315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	C	10188315	T	C	10188315	3	2	390	1	0	0	0	0	1	0	0	0	17174	1580	55	3	464	3	VHL	3	10188315	Missense_Mutation	SNP	T	TCGA-BP-4998-01A-01D-1462-08		10188315	187834115	8	22759											
NBEAL2	23218	broad.mit.edu	37	3	47043759	47043759	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	A	47043759	A	A	47043759	3	1	390	1	0	0	0	0	1	0	0	0	10196	1087	38	1	5254	1	NBEAL2	3	47043759	Missense_Mutation	SNP	G	TCGA-BP-4998-01A-01D-1462-08	36855444	47043759	150978671	9	22760											
ALAS1	211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52236547	52236547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	C	52236547	T	C	52236547	3	2	390	1	0	0	0	0	1	0	0	0	484	1667	58	3	230	3	ALAS1	3	52236547	Missense_Mutation	SNP	T	TCGA-BP-4998-01A-01D-1462-08	5192788	52236547	145785883	10	22761											
KNG1	3827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186459690	186459690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	A	186459690	G	A	186459690	3	1	390	1	0	0	0	0	1	0	0	0	8434	1203	42	2	1543	2	KNG1	3	186459690	Missense_Mutation	SNP	G	TCGA-BP-4998-01A-01D-1462-08	134223143	186459690	11562740	11	22762											
PECI	0	broad.mit.edu;hgsc.bcm.edu	37	6	4125471	4125471	+	RNA	SNP	G	G	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	4125471	G	T	4125471	1	4	390	0	1	0	0	0	0	0	0	0	11723	1015	35	4		4	PECI	6	4125471	RNA	SNP	G	TCGA-BP-4998-01A-01D-1462-08		4125471	166989596	12	22763											
RREB1	6239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7230362	7230362	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	7230362	A	T	7230362	3	4	390	1	0	0	0	0	1	0	0	0	13692	275	10	5	2056	5	RREB1	6	7230362	Missense_Mutation	SNP	A	TCGA-BP-4998-01A-01D-1462-08	3104891	7230362	163884705	13	22764											
C6orf62	81688	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	24714642	24714642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	24714642	C	T	24714642	3	4	390	1	0	0	0	0	1	0	0	0	2370	594	21	2	368	2	C6orf62	6	24714642	Missense_Mutation	SNP	C	TCGA-BP-4998-01A-01D-1462-08	17484280	24714642	146400425	14	22765											
TDRD6	221400	broad.mit.edu;ucsc.edu	37	6	46657418	46657418	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	46657418	T	T	46657418	3	4	390	1	0	0	0	0	1	0	0	0	15746	1000	35	4	1555	4	TDRD6	6	46657418	Missense_Mutation	SNP	G	TCGA-BP-4998-01A-01D-1462-08	21942776	46657418	124457649	15	22766											
PHF3	23469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	64416765	64416765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	G	64416765	A	G	64416765	3	3	390	1	0	0	0	0	1	0	0	0	11843	318	11	3	3756	3	PHF3	6	64416765	Missense_Mutation	SNP	A	TCGA-BP-4998-01A-01D-1462-08	17759347	64416765	106698302	16	22767											
LRP11	84918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	150174138	150174138	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	A	150174138	C	A	150174138	5	1	390	1	0	0	0	0	0	0	1	0	8960	521	18	4	754	4	LRP11	6	150174138	Splice_Site	SNP	C	TCGA-BP-4998-01A-01D-1462-08	85757373	150174138	20940929	17	22768											
PPP1R3A	5506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	113559039	113559039	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	A	113559039	C	A	113559039	4	1	390	1	0	0	0	0	0	1	0	0	12381	835	29	4	3371	4	PPP1R3A	7	113559039	Nonsense_Mutation	SNP	C	TCGA-BP-4998-01A-01D-1462-08		113559039	45579624	18	22769											
PARP12	64761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	139724549	139724549	+	Silent	SNP	G	G	C	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	C	139724549	G	C	139724549	2	2	390	1	0	0	0	0	0	0	0	1	11464	1335	47	4		4	PARP12	7	139724549	Silent	SNP	G	TCGA-BP-4998-01A-01D-1462-08	26165510	139724549	19414114	19	22770											
NKAIN3	286183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	63492147	63492147	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	G	63492147	C	G	63492147	3	3	390	1	0	0	0	0	1	0	0	0	10444	768	27	4	110	4	NKAIN3	8	63492147	Missense_Mutation	SNP	C	TCGA-BP-4998-01A-01D-1462-08		63492147	82871875	20	22771											
ABL1	25	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133760875	133760875	+	Silent	SNP	C	C	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	133760875	C	T	133760875	2	4	390	1	0	0	0	0	0	0	0	1	92	912	32	2		2	ABL1	9	133760875	Silent	SNP	C	TCGA-BP-4998-01A-01D-1462-08		133760875	7452556	21	22772											
ANO9	338440	broad.mit.edu;ucsc.edu	37	11	430378	430378	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	430378	T	T	430378	3	4	390	1	0	0	0	0	1	0	0	0	704	991	35	4	1847	4	ANO9	11	430378	Missense_Mutation	SNP	G	TCGA-BP-4998-01A-01D-1462-08		430378	134576138	22	22773											
OSBP	5007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	59361486	59361486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	G	59361486	T	G	59361486	3	3	390	1	0	0	0	0	1	0	0	0	11280	1722	60	5	897	5	OSBP	11	59361486	Missense_Mutation	SNP	T	TCGA-BP-4998-01A-01D-1462-08	58931108	59361486	75645030	23	22774											
CASC1	55259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	25264775	25264775	+	Silent	SNP	A	A	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	25264775	A	T	25264775	2	4	390	1	0	0	0	0	0	0	0	1	2662	59	3	5		5	CASC1	12	25264775	Silent	SNP	A	TCGA-BP-4998-01A-01D-1462-08		25264775	108587120	24	22775											
RPLP0	6175	broad.mit.edu;hgsc.bcm.edu	37	12	120636946	120636946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	C	120636946	A	C	120636946	3	2	390	1	0	0	0	0	1	0	0	0	13617	333	12	5	680	5	RPLP0	12	120636946	Missense_Mutation	SNP	A	TCGA-BP-4998-01A-01D-1462-08	95372171	120636946	13214949	25	22776											
CENPJ	55835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25466970	25466970	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	25466970	A	T	25466970	3	4	390	1	0	0	0	0	1	0	0	0	3236	98	4	5	1021	5	CENPJ	13	25466970	Missense_Mutation	SNP	A	TCGA-BP-4998-01A-01D-1462-08		25466970	89702908	26	22777											
SLC12A6	9990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	34544539	34544539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	34544539	C	T	34544539	3	4	390	1	0	0	0	0	1	0	0	0	14400	536	19	1	2355	1	SLC12A6	15	34544539	Missense_Mutation	SNP	C	TCGA-BP-4998-01A-01D-1462-08		34544539	67986853	27	22778											
EID1	23741	broad.mit.edu	37	15	49170496	49170496	+	Silent	SNP	C	A	A	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	A	49170496	A	A	49170496	2	1	390	1	0	0	0	0	0	0	0	1	4988	610	22	4		4	EID1	15	49170496	Silent	SNP	C	TCGA-BP-4998-01A-01D-1462-08	14625957	49170496	53360896	28	22779											
SRRM2	23524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2817282	2817282	+	Silent	SNP	A	A	T	rs111703345	alternate_allele	TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	2817282	A	T	2817282	2	4	390	1	0	0	0	0	0	0	0	1	15181	117	5	5		5	SRRM2	16	2817282	Silent	SNP	A	TCGA-BP-4998-01A-01D-1462-08		2817282	87537471	29	22780											
BRCA1	672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41197795	41197795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	A	41197795	G	A	41197795	3	1	390	1	0	0	0	0	1	0	0	0	1500	1000	35	2	103	2	BRCA1	17	41197795	Missense_Mutation	SNP	G	TCGA-BP-4998-01A-01D-1462-08		41197795	39997415	30	22781											
AZI1	22994	broad.mit.edu;ucsc.edu	37	17	79180636	79180636	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	79180636	T	T	79180636	3	4	390	1	0	0	0	0	1	0	0	0	1240	214	8	5	2907	5	AZI1	17	79180636	Missense_Mutation	SNP	A	TCGA-BP-4998-01A-01D-1462-08	37982841	79180636	2014574	31	22782											
C3	718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6681963	6681963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	G	6681963	A	G	6681963	3	3	390	1	0	0	0	0	1	0	0	0	2206	420	15	3	680	3	C3	19	6681963	Missense_Mutation	SNP	A	TCGA-BP-4998-01A-01D-1462-08		6681963	52447020	32	22783											
PGPEP1	54858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18466813	18466813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	G	18466813	A	G	18466813	3	3	390	1	0	0	0	0	1	0	0	0	11810	188	7	3	206	3	PGPEP1	19	18466813	Missense_Mutation	SNP	A	TCGA-BP-4998-01A-01D-1462-08	11784850	18466813	40662170	33	22784											
SNX5	27131	broad.mit.edu;ucsc.edu	37	20	17930825	17930825	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	T	17930825	T	T	17930825	3	4	390	1	0	0	0	0	1	0	0	0	14918	768	27	1	496	1	SNX5	20	17930825	Missense_Mutation	SNP	C	TCGA-BP-4998-01A-01D-1462-08		17930825	45094695	34	22785											
REM1	28954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30064360	30064360	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	G	30064360	T	G	30064360	3	3	390	1	0	0	0	0	1	0	0	0	13235	1783	62	5	114	5	REM1	20	30064360	Missense_Mutation	SNP	T	TCGA-BP-4998-01A-01D-1462-08	12133535	30064360	32961160	35	22786											
COL6A2	1292	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47542435	47542435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	A	47542435	G	A	47542435	3	1	390	1	0	0	0	0	1	0	0	0	3702	1087	38	1	1672	1	COL6A2	21	47542435	Missense_Mutation	SNP	G	TCGA-BP-4998-01A-01D-1462-08		47542435	587460	36	22787											
PHF8	23133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	54048718	54048718	+	Silent	SNP	T	T	C	novel		TCGA-BP-4998-01A-01D-1462-08	TCGA-BP-4998-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e646f930-967b-43a3-bd70-184e5c38efe5	10e99e0b-b3d0-4fbe-ab04-a579616e45a9	C	54048718	T	C	54048718	2	2	390	1	0	0	0	0	0	0	0	1	11847	1548	54	3		3	PHF8	23	54048718	Silent	SNP	T	TCGA-BP-4998-01A-01D-1462-08		54048718	101221842	37	22788											
RCC2	55920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	17747210	17747210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	17747210	C	G	17747210	3	3	391	1	0	0	0	0	1	0	0	0	13187	637	22	4	737	4	RCC2	1	17747210	Missense_Mutation	SNP	C	TCGA-BP-4999-01A-01D-1462-08		17747210	231503411	1	22789											
TEKT2	27285	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36552420	36552420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	36552420	A	G	36552420	3	3	391	1	0	0	0	0	1	0	0	0	15765	247	9	3	618	3	TEKT2	1	36552420	Missense_Mutation	SNP	A	TCGA-BP-4999-01A-01D-1462-08	18805210	36552420	212698201	2	22790											
USP33	23032	hgsc.bcm.edu;ucsc.edu	37	1	78167136	78167136	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	-	78167136	T	-	78167136	7	5	391	1	0	1	0	1	0	0	0	0	17076	1606	56	0	320	0	USP33	1	78167136	Frame_Shift_Del	DEL	T	TCGA-BP-4999-01A-01D-1462-08	41614716	78167136	171083485	3	22791											
SSX2IP	117178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	85117618	85117618	+	Silent	SNP	G	G	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	85117618	G	T	85117618	2	4	391	1	0	0	0	0	0	0	0	1	15216	987	35	4		4	SSX2IP	1	85117618	Silent	SNP	G	TCGA-BP-4999-01A-01D-1462-08	6950482	85117618	164133003	4	22792											
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu	37	1	144931029	144931029	+	Missense_Mutation	SNP	G	G	A	rs149466177	alternate_allele	TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	144931029	G	A	144931029	3	1	391	1	0	0	0	0	1	0	0	0	11650	1232	43	2	7019	2	PDE4DIP	1	144931029	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	59813411	144931029	104319592	5	22793											
CD84	8832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160523749	160523749	+	Silent	SNP	C	C	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	160523749	C	T	160523749	2	4	391	1	0	0	0	0	0	0	0	1	3044	523	19	1		1	CD84	1	160523749	Silent	SNP	C	TCGA-BP-4999-01A-01D-1462-08	15592720	160523749	88726872	6	22794											
TPR	7175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186324584	186324584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	C	186324584	T	C	186324584	3	2	391	1	0	0	0	0	1	0	0	0	16428	1812	63	3	5102	3	TPR	1	186324584	Missense_Mutation	SNP	T	TCGA-BP-4999-01A-01D-1462-08	25800835	186324584	62926037	7	22795											
HHIPL2	79802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	222721137	222721137	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	222721137	C	G	222721137	3	3	391	1	0	0	0	0	1	0	0	0	7101	855	30	4	1960	4	HHIPL2	1	222721137	Missense_Mutation	SNP	C	TCGA-BP-4999-01A-01D-1462-08	36396553	222721137	26529484	8	22796											
DNMT3A	1788	hgsc.bcm.edu;ucsc.edu	37	2	25467027	25467027	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	-	25467027	T	-	25467027	7	5	391	1	0	1	0	1	0	0	0	0	4678	1490	52	0	926	0	DNMT3A	2	25467027	Frame_Shift_Del	DEL	T	TCGA-BP-4999-01A-01D-1462-08		25467027	217732346	9	22797											
ALMS1	7840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	73717074	73717074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	73717074	A	G	73717074	3	3	391	1	0	0	0	0	1	0	0	0	535	14	1	3	8023	3	ALMS1	2	73717074	Missense_Mutation	SNP	A	TCGA-BP-4999-01A-01D-1462-08	48250047	73717074	169482299	10	22798											
TMBIM1	64114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219140333	219140333	+	Silent	SNP	G	G	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	219140333	G	A	219140333	2	1	391	1	0	0	0	0	0	0	0	1	15993	1140	40	1		1	TMBIM1	2	219140333	Silent	SNP	G	TCGA-BP-4999-01A-01D-1462-08	145423259	219140333	24059040	11	22799											
ZFAND2B	130617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220073738	220073738	+	Silent	SNP	G	G	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	220073738	G	A	220073738	2	1	391	1	0	0	0	0	0	0	0	1	17640	1364	48	2		2	ZFAND2B	2	220073738	Silent	SNP	G	TCGA-BP-4999-01A-01D-1462-08	933405	220073738	23125635	12	22800											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183763	10183763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq;PacBio			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	10183763	A	G	10183763	3	3	391	1	0	0	0	0	1	0	0	0	17174	130	5	3	234	3	VHL	3	10183763	Missense_Mutation	SNP	A	TCGA-BP-4999-01A-01D-1462-08		10183763	187838667	13	22801											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52663035	52663035	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	52663035	G	A	52663035	4	1	391	1	0	0	0	0	0	1	0	0	11498	1299	45	2	3658	2	PBRM1	3	52663035	Nonsense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	42479272	52663035	145359395	14	22802											
APBB2	323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	40829224	40829224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	40829224	G	A	40829224	3	1	391	1	0	0	0	0	1	0	0	0	761	1144	40	1	642	1	APBB2	4	40829224	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08		40829224	150325052	15	22803											
CNGA1	1259	broad.mit.edu;hgsc.bcm.edu	37	4	47939840	47939840	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	C	47939840	A	C	47939840	3	2	391	1	0	0	0	0	1	0	0	0	3598	420	15	5	1405	5	CNGA1	4	47939840	Missense_Mutation	SNP	A	TCGA-BP-4999-01A-01D-1462-08	7110616	47939840	143214436	16	22804											
CLPTM1L	81037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	1330417	1330417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	1330417	G	A	1330417	3	1	391	1	0	0	0	0	1	0	0	0	3557	1087	38	1	594	1	CLPTM1L	5	1330417	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08		1330417	179584843	17	22805											
NSUN2	54888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	6600260	6600260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	C	6600260	G	C	6600260	3	2	391	1	0	0	0	0	1	0	0	0	10685	1144	40	4	224	4	NSUN2	5	6600260	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	5269843	6600260	174315000	18	22806											
MCC	4163	hgsc.bcm.edu	37	5	112399691	112399692	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	112399692	-	G	112399691	7	5	391	1	0	1	1	0	0	0	0	0	9380	1580	55	0	880	0	MCC	5	112399691	Frame_Shift_Ins	INS	-	TCGA-BP-4999-01A-01D-1462-08	105799431	112399691	68515569	19	22807											
RELL2	285613	hgsc.bcm.edu;ucsc.edu	37	5	141019628	141019628	+	Silent	SNP	G	G	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	141019628	G	A	141019628	2	1	391	1	0	0	0	0	0	0	0	1	13232	1161	41	2		2	RELL2	5	141019628	Silent	SNP	G	TCGA-BP-4999-01A-01D-1462-08	28619937	141019628	39895632	20	22808											
HLA-DPA1	3113	broad.mit.edu;hgsc.bcm.edu	37	6	33036464	33036464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	33036464	C	T	33036464	3	4	391	1	0	0	0	0	1	0	0	0	7209	536	19	1	40	1	HLA-DPA1	6	33036464	Missense_Mutation	SNP	C	TCGA-BP-4999-01A-01D-1462-08		33036464	138078603	21	22809											
MYO6	4646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	76591436	76591436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	76591436	G	A	76591436	3	1	391	1	0	0	0	0	1	0	0	0	10088	1290	45	2	2403	2	MYO6	6	76591436	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	43554972	76591436	94523631	22	22810											
MICALL2	79778	broad.mit.edu;ucsc.edu	37	7	1474748	1474748	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	1474748	G	G	1474748	3	3	391	1	0	0	0	0	1	0	0	0	9581	101	4	3	95	3	MICALL2	7	1474748	Missense_Mutation	SNP	A	TCGA-BP-4999-01A-01D-1462-08		1474748	157663915	23	22811											
GPNMB	10457	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23307604	23307604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	23307604	G	A	23307604	3	1	391	1	0	0	0	0	1	0	0	0	6627	1232	43	2	1283	2	GPNMB	7	23307604	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	21832856	23307604	135831059	24	22812											
ESYT2	57488	hgsc.bcm.edu;ucsc.edu	37	7	158557475	158557475	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	-	158557475	C	-	158557475	7	5	391	1	0	1	0	1	0	0	0	0	5267	478	17	0	1599	0	ESYT2	7	158557475	Frame_Shift_Del	DEL	C	TCGA-BP-4999-01A-01D-1462-08	135249871	158557475	581188	25	22813											
RP1	6101	hgsc.bcm.edu;ucsc.edu	37	8	55539690	55539695	+	In_Frame_Del	DEL	TACCAG	TACCAG	-	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	TACCAG	TACCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	-	55539695	TACCAG	-	55539690	7	5	391	1	0	1	0	1	0	0	0	0	13545	1764	61	0	3258	0	RP1	8	55539690	In_Frame_Del	DEL	TACCAG	TCGA-BP-4999-01A-01D-1462-08		55539690	90824332	26	22814											
ZNF658	26149	broad.mit.edu	37	9	40772750	40772750	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	40772750	T	T	40772750	3	4	391	1	0	0	0	0	1	0	0	0	18081	478	17	2	658	2	ZNF658	9	40772750	Missense_Mutation	SNP	C	TCGA-BP-4999-01A-01D-1462-08		40772750	100440681	27	22815											
PRDM12	59335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133543580	133543580	+	Silent	SNP	C	C	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	133543580	C	A	133543580	2	1	391	1	0	0	0	0	0	0	0	1	12463	874	31	4		4	PRDM12	9	133543580	Silent	SNP	C	TCGA-BP-4999-01A-01D-1462-08	92770830	133543580	7669851	28	22816											
HHEX	3087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	94454334	94454334	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	94454334	C	G	94454334	3	3	391	1	0	0	0	0	1	0	0	0	7098	564	20	4	636	4	HHEX	10	94454334	Missense_Mutation	SNP	C	TCGA-BP-4999-01A-01D-1462-08		94454334	41080413	29	22817											
TALDO1	6888	broad.mit.edu	37	11	747520	747520	+	Silent	SNP	C	T	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	747520	T	T	747520	2	4	391	1	0	0	0	0	0	0	0	1	15555	639	23	1		1	TALDO1	11	747520	Silent	SNP	C	TCGA-BP-4999-01A-01D-1462-08		747520	134258996	30	22818											
EIF4G2	1982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	10825853	10825853	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	C	10825853	G	C	10825853	3	2	391	1	0	0	0	0	1	0	0	0	5039	1348	47	4	2327	4	EIF4G2	11	10825853	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	10078333	10825853	124180663	31	22819											
ACTN3	89	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66322058	66322058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	66322058	C	T	66322058	3	4	391	1	0	0	0	0	1	0	0	0	206	652	23	1	539	1	ACTN3	11	66322058	Missense_Mutation	SNP	C	TCGA-BP-4999-01A-01D-1462-08	55496205	66322058	68684458	32	22820											
INPPL1	3636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	71948448	71948448	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	71948448	C	G	71948448	3	3	391	1	0	0	0	0	1	0	0	0	7768	855	30	4	3262	4	INPPL1	11	71948448	Missense_Mutation	SNP	C	TCGA-BP-4999-01A-01D-1462-08	5626390	71948448	63058068	33	22821											
THY1	7070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119290972	119290972	+	Silent	SNP	C	C	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	119290972	C	G	119290972	2	3	391	1	0	0	0	0	0	0	0	1	15897	813	29	4		4	THY1	11	119290972	Silent	SNP	C	TCGA-BP-4999-01A-01D-1462-08	47342524	119290972	15715544	34	22822											
RAB21	23011	hgsc.bcm.edu;ucsc.edu	37	12	72164429	72164431	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	-	72164431	AAT	-	72164429	7	5	391	1	0	1	0	1	0	0	0	0	12921	14	1	0	287	0	RAB21	12	72164429	In_Frame_Del	DEL	AAT	TCGA-BP-4999-01A-01D-1462-08		72164429	61687466	35	22823											
CLIP1	6249	hgsc.bcm.edu	37	12	122845659	122845660	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	122845660	-	G	122845659	7	5	391	1	0	1	1	0	0	0	0	0	3534	59	3	0	3515	0	CLIP1	12	122845659	Frame_Shift_Ins	INS	-	TCGA-BP-4999-01A-01D-1462-08	50681230	122845659	11006236	36	22824											
PDS5B	23047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33222938	33222938	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	C	33222938	A	C	33222938	3	2	391	1	0	0	0	0	1	0	0	0	11699	333	12	5	31	5	PDS5B	13	33222938	Missense_Mutation	SNP	A	TCGA-BP-4999-01A-01D-1462-08		33222938	81946940	37	22825											
PDS5B	23047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33316758	33316758	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	33316758	G	A	33316758	4	1	391	1	0	0	0	0	0	1	0	0	11699	1212	42	2	2591	2	PDS5B	13	33316758	Nonsense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	93820	33316758	81853120	38	22826											
OR10G3	26533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	22038804	22038804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	22038804	C	A	22038804	3	1	391	1	0	0	0	0	1	0	0	0	10907	854	30	4	872	4	OR10G3	14	22038804	Missense_Mutation	SNP	C	TCGA-BP-4999-01A-01D-1462-08		22038804	85310736	39	22827											
RDH11	51109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	68151872	68151872	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	68151872	T	A	68151872	3	1	391	1	0	0	0	0	1	0	0	0	13203	1722	60	5	250	5	RDH11	14	68151872	Missense_Mutation	SNP	T	TCGA-BP-4999-01A-01D-1462-08	46113068	68151872	39197668	40	22828											
RYR3	6263	broad.mit.edu	37	15	34119402	34119402	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	-	34119402	-	-	34119402	7	5	391	1	0	1	0	1	0	0	0	0	13783	1609	56	0	11586	0	RYR3	15	34119402	Frame_Shift_Del	DEL	T	TCGA-BP-4999-01A-01D-1462-08		34119402	68411990	41	22829											
ZFYVE19	84936	broad.mit.edu;hgsc.bcm.edu	37	15	41105065	41105065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	41105065	G	T	41105065	3	4	391	1	0	0	0	0	1	0	0	0	17677	1058	37	4	1021	4	ZFYVE19	15	41105065	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	6985663	41105065	61426327	42	22830											
RFX7	64864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	56390306	56390306	+	Silent	SNP	A	A	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	56390306	A	G	56390306	2	3	391	1	0	0	0	0	0	0	0	1	13281	117	5	3		3	RFX7	15	56390306	Silent	SNP	A	TCGA-BP-4999-01A-01D-1462-08	15285241	56390306	46141086	43	22831											
ZC3H7A	29066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	11873154	11873154	+	Silent	SNP	A	A	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	11873154	A	G	11873154	2	3	391	1	0	0	0	0	0	0	0	1	17584	98	4	3		3	ZC3H7A	16	11873154	Silent	SNP	A	TCGA-BP-4999-01A-01D-1462-08		11873154	78481599	44	22832											
SETD1A	9739	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30977377	30977377	+	Silent	SNP	C	C	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	30977377	C	G	30977377	2	3	391	1	0	0	0	0	0	0	0	1	14143	668	24	4		4	SETD1A	16	30977377	Silent	SNP	C	TCGA-BP-4999-01A-01D-1462-08	19104223	30977377	59377376	45	22833											
CCT6B	10693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33269618	33269618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	A	33269618	T	A	33269618	3	1	391	1	0	0	0	0	1	0	0	0	2960	1551	54	5	854	5	CCT6B	17	33269618	Missense_Mutation	SNP	T	TCGA-BP-4999-01A-01D-1462-08		33269618	47925592	46	22834											
KRT24	192666	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38859430	38859430	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	C	38859430	G	C	38859430	3	2	391	1	0	0	0	0	1	0	0	0	8468	1280	45	4	1093	4	KRT24	17	38859430	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	5589812	38859430	42335780	47	22835											
APOH	350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	64216834	64216834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	64216834	G	T	64216834	3	4	391	1	0	0	0	0	1	0	0	0	804	1261	44	4	611	4	APOH	17	64216834	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	25357404	64216834	16978376	48	22836											
COG1	9382	hgsc.bcm.edu;ucsc.edu	37	17	71197678	71197678	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	-	71197678	G	-	71197678	7	5	391	1	0	1	0	1	0	0	0	0	3659	1116	39	0	1738	0	COG1	17	71197678	Frame_Shift_Del	DEL	G	TCGA-BP-4999-01A-01D-1462-08	6980844	71197678	9997532	49	22837											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9070296	9070296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	G	9070296	T	G	9070296	3	3	391	1	0	0	0	0	1	0	0	0	9980	1725	60	5	26701	5	MUC16	19	9070296	Missense_Mutation	SNP	T	TCGA-BP-4999-01A-01D-1462-08		9070296	50058687	50	22838											
TMEM59L	25789	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18724826	18724826	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	C	18724826	G	C	18724826	3	2	391	1	0	0	0	0	1	0	0	0	16198	1014	35	4	322	4	TMEM59L	19	18724826	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08	9654530	18724826	40404157	51	22839											
ZNF607	84775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38190552	38190552	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	38190552	A	T	38190552	3	4	391	1	0	0	0	0	1	0	0	0	18045	330	12	5	1614	5	ZNF607	19	38190552	Missense_Mutation	SNP	A	TCGA-BP-4999-01A-01D-1462-08	19465726	38190552	20938431	52	22840											
MZF1	7593	broad.mit.edu	37	19	59073897	59073897	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	C	59073897	C	C	59073897	3	2	391	1	0	0	0	0	1	0	0	0	10115	1638	57	3	461	3	MZF1	19	59073897	Missense_Mutation	SNP	T	TCGA-BP-4999-01A-01D-1462-08	20883345	59073897	55086	53	22841											
PYGB	5834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	25249816	25249816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	25249816	G	T	25249816	3	4	391	1	0	0	0	0	1	0	0	0	12873	1348	47	4	407	4	PYGB	20	25249816	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08		25249816	37775704	54	22842											
MYH9	4627	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	36693020	36693020	+	Silent	SNP	C	C	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	36693020	C	T	36693020	2	4	391	1	0	0	0	0	0	0	0	1	10049	912	32	2		2	MYH9	22	36693020	Silent	SNP	C	TCGA-BP-4999-01A-01D-1462-08		36693020	14611546	55	22843											
MAGEA4	4103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151092616	151092616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4999-01A-01D-1462-08	TCGA-BP-4999-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	86ffb814-7c65-426b-b7b5-7250322c4d01	5f731fb4-2c74-4c8b-b498-7e5d036658a8	T	151092616	G	T	151092616	3	4	391	1	0	0	0	0	1	0	0	0	9175	933	33	4	482	4	MAGEA4	23	151092616	Missense_Mutation	SNP	G	TCGA-BP-4999-01A-01D-1462-08		151092616	4177944	56	22844											
SAMD11	148398	broad.mit.edu	37	1	878409	878409	+	Missense_Mutation	SNP	C	T	T	rs181205550	by1000genomes	TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	878409	T	T	878409	3	4	392	1	0	0	0	0	1	0	0	0	13829	681	24	2	1573	2	SAMD11	1	878409	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08		878409	248372212	1	22845											
CDCP2	200008	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54605450	54605450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	54605450	C	T	54605450	3	4	392	1	0	0	0	0	1	0	0	0	3096	623	22	2	260	2	CDCP2	1	54605450	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08	53727041	54605450	194645171	2	22846											
SPAG17	200162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	118581935	118581935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	G	118581935	T	G	118581935	3	3	392	1	0	0	0	0	1	0	0	0	14992	1551	54	5	3476	5	SPAG17	1	118581935	Missense_Mutation	SNP	T	TCGA-BP-5000-01A-01D-1462-08	63976485	118581935	130668686	3	22847											
ADAM15	8751	hgsc.bcm.edu;ucsc.edu	37	1	155028946	155028946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	155028946	G	A	155028946	3	1	392	1	0	0	0	0	1	0	0	0	237	1362	47	2	1037	2	ADAM15	1	155028946	Missense_Mutation	SNP	G	TCGA-BP-5000-01A-01D-1462-08	36447011	155028946	94221675	4	22848											
RUSC1	23623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155291906	155291906	+	Silent	SNP	C	C	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	155291906	C	A	155291906	2	1	392	1	0	0	0	0	0	0	0	1	13763	639	23	4		4	RUSC1	1	155291906	Silent	SNP	C	TCGA-BP-5000-01A-01D-1462-08	262960	155291906	93958715	5	22849											
TTC24	164118	hgsc.bcm.edu	37	1	156553232	156553232	+	Frame_Shift_Del	DEL	C	C	-	rs140853435	by1000genomes	TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	-	156553232	C	-	156553232	7	5	392	1	0	1	0	1	0	0	0	0	16704	739	26	0	1156	0	TTC24	1	156553232	Frame_Shift_Del	DEL	C	TCGA-BP-5000-01A-01D-1462-08	1261326	156553232	92697389	6	22850											
RNPEP	6051	hgsc.bcm.edu;ucsc.edu	37	1	201970845	201970845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	-	201970845	A	-	201970845	7	5	392	1	0	1	0	1	0	0	0	0	13522	391	14	0	1406	0	RNPEP	1	201970845	Frame_Shift_Del	DEL	A	TCGA-BP-5000-01A-01D-1462-08	45417613	201970845	47279776	7	22851											
LBR	3930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	225599096	225599096	+	Silent	SNP	T	T	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	225599096	T	A	225599096	2	1	392	1	0	0	0	0	0	0	0	1	8659	1770	62	5		5	LBR	1	225599096	Silent	SNP	T	TCGA-BP-5000-01A-01D-1462-08	23628251	225599096	23651525	8	22852											
NEB	4703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152548582	152548582	+	Silent	SNP	T	T	C	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	152548582	T	C	152548582	2	2	392	1	0	0	0	0	0	0	0	1	10309	1838	64	3		3	NEB	2	152548582	Silent	SNP	T	TCGA-BP-5000-01A-01D-1462-08		152548582	90650791	9	22853											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179643760	179643760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	179643760	C	T	179643760	3	4	392	1	0	0	0	0	1	0	0	0	16747	536	19	1	107295	1	TTN	2	179643760	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08	27095178	179643760	63555613	10	22854											
UGT1A6	54578	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234602164	234602164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	G	234602164	A	G	234602164	3	3	392	1	0	0	0	0	1	0	0	0	16961	179	7	3	516	3	UGT1A6	2	234602164	Missense_Mutation	SNP	A	TCGA-BP-5000-01A-01D-1462-08	54958404	234602164	8597209	11	22855											
RAMP1	10267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238820196	238820196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	238820196	C	T	238820196	3	4	392	1	0	0	0	0	1	0	0	0	13034	507	18	2	228	2	RAMP1	2	238820196	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08	4218032	238820196	4379177	12	22856											
PRSS50	29122	broad.mit.edu	37	3	46753884	46753884	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	46753884	A	A	46753884	3	1	392	1	0	0	0	0	1	0	0	0	12641	797	28	4	151	4	PRSS50	3	46753884	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08		46753884	151268546	13	22857											
RNF123	63891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49734822	49734822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	49734822	T	C	49734822	3	2	392	1	0	0	0	0	1	0	0	0	13446	1435	50	3	288	3	RNF123	3	49734822	Missense_Mutation	SNP	T	TCGA-BP-5000-01A-01D-1462-08	2980938	49734822	148287608	14	22858											
HTT	3064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	3208255	3208255	+	Silent	SNP	G	G	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	3208255	G	T	3208255	2	4	392	1	0	0	0	0	0	0	0	1	7464	1132	40	4		4	HTT	4	3208255	Silent	SNP	G	TCGA-BP-5000-01A-01D-1462-08		3208255	187946021	15	22859											
AASDH	132949	broad.mit.edu;hgsc.bcm.edu	37	4	57204599	57204599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	57204599	C	T	57204599	3	4	392	1	0	0	0	0	1	0	0	0	22	478	17	2	34	2	AASDH	4	57204599	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08	53996344	57204599	133949677	16	22860											
IPO11	51194	broad.mit.edu;ucsc.edu	37	5	61779841	61779841	+	Silent	SNP	C	T	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	61779841	T	T	61779841	2	4	392	1	0	0	0	0	0	0	0	1	7800	709	25	2		2	IPO11	5	61779841	Silent	SNP	C	TCGA-BP-5000-01A-01D-1462-08		61779841	119135419	17	22861											
PCDHB7	56129	broad.mit.edu;hgsc.bcm.edu	37	5	140553992	140553992	+	Missense_Mutation	SNP	G	G	T	rs146429251	byfrequency;alternate_allele	TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	140553992	G	T	140553992	3	4	392	1	0	0	0	0	1	0	0	0	11554	1203	42	4	1578	4	PCDHB7	5	140553992	Missense_Mutation	SNP	G	TCGA-BP-5000-01A-01D-1462-08	78774151	140553992	40361268	18	22862											
PHF1	5252	hgsc.bcm.edu;ucsc.edu	37	6	33382506	33382507	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	33382507	-	T	33382506	7	5	392	1	0	1	1	0	0	0	0	0	11827	217	8	0	987	0	PHF1	6	33382506	Frame_Shift_Ins	INS	-	TCGA-BP-5000-01A-01D-1462-08		33382506	137732561	19	22863											
PRIM2	5558	broad.mit.edu;hgsc.bcm.edu	37	6	57498975	57498975	+	Silent	SNP	T	T	C	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	57498975	T	C	57498975	2	2	392	1	0	0	0	0	0	0	0	1	12501	1490	52	3		3	PRIM2	6	57498975	Silent	SNP	T	TCGA-BP-5000-01A-01D-1462-08	24116469	57498975	113616092	20	22864											
DNAH11	8701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	21789334	21789334	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	21789334	G	C	21789334	3	2	392	1	0	0	0	0	1	0	0	0	4601	933	33	4	8944	4	DNAH11	7	21789334	Missense_Mutation	SNP	G	TCGA-BP-5000-01A-01D-1462-08		21789334	137349329	21	22865											
C7orf29	113763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150027696	150027696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	150027696	G	A	150027696	3	1	392	1	0	0	0	0	1	0	0	0	2387	1087	38	1	205	1	C7orf29	7	150027696	Missense_Mutation	SNP	G	TCGA-BP-5000-01A-01D-1462-08	128238362	150027696	9110967	22	22866											
C8orf34	116328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	69351861	69351861	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	69351861	G	A	69351861	4	1	392	1	0	0	0	0	0	1	0	0	2424	1357	47	2	124	2	C8orf34	8	69351861	Nonsense_Mutation	SNP	G	TCGA-BP-5000-01A-01D-1462-08		69351861	77012161	23	22867											
TATDN1	83940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125500921	125500921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	125500921	T	C	125500921	3	2	392	1	0	0	0	0	1	0	0	0	15603	1493	52	3	89	3	TATDN1	8	125500921	Missense_Mutation	SNP	T	TCGA-BP-5000-01A-01D-1462-08	56149060	125500921	20863101	24	22868											
ANKRD20A4	728747	hgsc.bcm.edu	37	9	69393857	69393860	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	TACT	TACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	-	69393860	TACT	-	69393857	7	5	392	1	0	1	0	1	0	0	0	0	650	1406	49	0	795	0	ANKRD20A4	9	69393857	Frame_Shift_Del	DEL	TACT	TCGA-BP-5000-01A-01D-1462-08		69393857	71819574	25	22869											
UPF2	26019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	12009405	12009405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	12009405	G	T	12009405	3	4	392	1	0	0	0	0	1	0	0	0	17016	1058	37	4	1868	4	UPF2	10	12009405	Missense_Mutation	SNP	G	TCGA-BP-5000-01A-01D-1462-08		12009405	123525342	26	22870											
KIAA0913	0	broad.mit.edu	37	10	75551975	75551975	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	75551975	A	A	75551975	3	1	392	1	0	0	0	0	1	0	0	0	8207	479	17	4	1716	4	KIAA0913	10	75551975	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08	63542570	75551975	59982772	27	22871											
AHNAK	79026	broad.mit.edu;hgsc.bcm.edu	37	11	62288165	62288165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	G	62288165	T	G	62288165	3	3	392	1	0	0	0	0	1	0	0	0	414	1841	64	5	4068	5	AHNAK	11	62288165	Missense_Mutation	SNP	T	TCGA-BP-5000-01A-01D-1462-08		62288165	72718351	28	22872											
SLC22A12	116085	broad.mit.edu;hgsc.bcm.edu	37	11	64360346	64360346	+	Silent	SNP	C	C	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	64360346	C	A	64360346	2	1	392	1	0	0	0	0	0	0	0	1	14456	668	24	4		4	SLC22A12	11	64360346	Silent	SNP	C	TCGA-BP-5000-01A-01D-1462-08	2072181	64360346	70646170	29	22873											
C2CD3	26005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	73825591	73825591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	73825591	T	C	73825591	3	2	392	1	0	0	0	0	1	0	0	0	2156	1812	63	3	4411	3	C2CD3	11	73825591	Missense_Mutation	SNP	T	TCGA-BP-5000-01A-01D-1462-08	9465245	73825591	61180925	30	22874											
TMED2	10959	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124069276	124069276	+	Silent	SNP	G	G	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	124069276	G	A	124069276	2	1	392	1	0	0	0	0	0	0	0	1	16016	1020	36	2		2	TMED2	12	124069276	Silent	SNP	G	TCGA-BP-5000-01A-01D-1462-08		124069276	9782619	31	22875											
NDFIP2	54602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	80094986	80094986	+	Silent	SNP	G	G	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	80094986	G	A	80094986	2	1	392	1	0	0	0	0	0	0	0	1	10253	962	34	2		2	NDFIP2	13	80094986	Silent	SNP	G	TCGA-BP-5000-01A-01D-1462-08		80094986	35074892	32	22876											
CLYBL	171425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	100511253	100511253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	100511253	C	A	100511253	3	1	392	1	0	0	0	0	1	0	0	0	3575	855	30	4	398	4	CLYBL	13	100511253	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08	20416267	100511253	14658625	33	22877											
ADCY4	196883	broad.mit.edu;hgsc.bcm.edu	37	14	24801009	24801009	+	Silent	SNP	G	G	C	rs146843899	byfrequency;alternate_allele	TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	24801009	G	C	24801009	2	2	392	1	0	0	0	0	0	0	0	1	296	1103	39	4		4	ADCY4	14	24801009	Silent	SNP	G	TCGA-BP-5000-01A-01D-1462-08		24801009	82548531	34	22878											
RPL4	6124	hgsc.bcm.edu	37	15	66791809	66791809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	66791809	G	A	66791809	3	1	392	1	0	0	0	0	1	0	0	0	13608	1348	47	2	67	2	RPL4	15	66791809	Missense_Mutation	SNP	G	TCGA-BP-5000-01A-01D-1462-08		66791809	35739583	35	22879											
AGBL1	123624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	86940775	86940775	+	Silent	SNP	C	C	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	86940775	C	T	86940775	2	4	392	1	0	0	0	0	0	0	0	1	375	697	25	2		2	AGBL1	15	86940775	Silent	SNP	C	TCGA-BP-5000-01A-01D-1462-08	20148966	86940775	15590617	36	22880											
FBXL19	54620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30939867	30939867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	30939867	C	T	30939867	3	4	392	1	0	0	0	0	1	0	0	0	5722	652	23	1	789	1	FBXL19	16	30939867	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08		30939867	59414886	37	22881											
MYST1	0	broad.mit.edu;hgsc.bcm.edu	37	16	31141808	31141808	+	Silent	SNP	C	C	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	31141808	C	T	31141808	2	4	392	1	0	0	0	0	0	0	0	1	10109	871	31	1		1	MYST1	16	31141808	Silent	SNP	C	TCGA-BP-5000-01A-01D-1462-08	201941	31141808	59212945	38	22882											
ZNF257	113835	broad.mit.edu;hgsc.bcm.edu	37	19	22271484	22271484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	T	22271484	C	T	22271484	3	4	392	1	0	0	0	0	1	0	0	0	17812	565	20	2	946	2	ZNF257	19	22271484	Missense_Mutation	SNP	C	TCGA-BP-5000-01A-01D-1462-08		22271484	36857499	39	22883											
ZNF528	84436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52918813	52918813	+	Silent	SNP	T	T	C	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	52918813	T	C	52918813	2	2	392	1	0	0	0	0	0	0	0	1	17981	1567	55	3		3	ZNF528	19	52918813	Silent	SNP	T	TCGA-BP-5000-01A-01D-1462-08	30647329	52918813	6210170	40	22884											
EMILIN3	90187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39990048	39990048	+	Silent	SNP	T	T	G	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	G	39990048	T	G	39990048	2	3	392	1	0	0	0	0	0	0	0	1	5097	1588	55	5		5	EMILIN3	20	39990048	Silent	SNP	T	TCGA-BP-5000-01A-01D-1462-08		39990048	23035472	41	22885											
COL6A2	1292	broad.mit.edu;hgsc.bcm.edu	37	21	47531392	47531392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	47531392	T	C	47531392	3	2	392	1	0	0	0	0	1	0	0	0	3702	1464	51	3	4	3	COL6A2	21	47531392	Missense_Mutation	SNP	T	TCGA-BP-5000-01A-01D-1462-08		47531392	598503	42	22886											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu	37	X	53227751	53227751	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	A	53227751	G	A	53227751	4	1	392	1	0	0	0	0	0	1	0	0	8142	1328	46	2	2383	2	KDM5C	23	53227751	Nonsense_Mutation	SNP	G	TCGA-BP-5000-01A-01D-1462-08		53227751	102042809	43	22887											
BCORL1	63035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129146951	129146951	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5000-01A-01D-1462-08	TCGA-BP-5000-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9816eaa-3c60-4fbf-abd6-6d869ca9cca7	ec0ff7f5-675f-4168-85f8-edf28a5d2e36	C	129146951	G	C	129146951	3	2	392	1	0	0	0	0	1	0	0	0	1387	1203	42	4	213	4	BCORL1	23	129146951	Missense_Mutation	SNP	G	TCGA-BP-5000-01A-01D-1462-08	75919200	129146951	26123609	44	22888											
VHL	7428	hgsc.bcm.edu	37	3	10183811	10183811	+	Nonsense_Mutation	SNP	G	G	T	rs5030829		TCGA-BP-5001-01A-01D-1392-10	TCGA-BP-5001-11A-01D-1392-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	b2427ca6-bcd0-4ab1-8e6d-3f48f7ff3a37	971f136c-e7eb-442a-a028-7491d68f3e57	T	10183811	G	T	10183811	4	4	393	1	0	0	0	0	0	1	0	0	17174	1059	37	4	282	4	VHL	3	10183811	Nonsense_Mutation	SNP	G	TCGA-BP-5001-01A-01D-1392-10		10183811	187838619	1	22889											
SKI	6497	broad.mit.edu;hgsc.bcm.edu	37	1	2234822	2234822	+	Silent	SNP	G	G	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	2234822	G	A	2234822	2	1	394	1	0	0	0	0	0	0	0	1	14370	1103	39	1		1	SKI	1	2234822	Silent	SNP	G	TCGA-BP-5001-01A-01D-1462-08		2234822	247015799	1	22890											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11227530	11227530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	11227530	A	G	11227530	3	3	394	1	0	0	0	0	1	0	0	0	9961	372	13	3	3471	3	MTOR	1	11227530	Missense_Mutation	SNP	A	TCGA-BP-5001-01A-01D-1462-08	8992708	11227530	238023091	2	22891											
EIF4G3	8672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	21133885	21133885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	21133885	C	T	21133885	3	4	394	1	0	0	0	0	1	0	0	0	5040	739	26	2	76	2	EIF4G3	1	21133885	Missense_Mutation	SNP	C	TCGA-BP-5001-01A-01D-1462-08	9906355	21133885	228116736	3	22892											
FCRL5	83416	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	157494128	157494128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	157494128	C	T	157494128	3	4	394	1	0	0	0	0	1	0	0	0	5805	478	17	2	785	2	FCRL5	1	157494128	Missense_Mutation	SNP	C	TCGA-BP-5001-01A-01D-1462-08	136360243	157494128	91756493	4	22893											
SPTA1	6708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158582607	158582607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	158582607	C	A	158582607	3	1	394	1	0	0	0	0	1	0	0	0	15128	695	24	4	133	4	SPTA1	1	158582607	Missense_Mutation	SNP	C	TCGA-BP-5001-01A-01D-1462-08	1088479	158582607	90668014	5	22894											
CEP170	9859	hgsc.bcm.edu	37	1	243328392	243328393	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	-	243328393	TT	-	243328392	7	5	394	1	0	1	0	1	0	0	0	0	3252	1609	56	0	1946	0	CEP170	1	243328392	Frame_Shift_Del	DEL	TT	TCGA-BP-5001-01A-01D-1462-08	84745785	243328392	5922229	6	22895											
SDCCAG8	10806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	243581287	243581287	+	Silent	SNP	T	T	C	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	C	243581287	T	C	243581287	2	2	394	1	0	0	0	0	0	0	0	1	13972	1722	60	3		3	SDCCAG8	1	243581287	Silent	SNP	T	TCGA-BP-5001-01A-01D-1462-08	252895	243581287	5669334	7	22896											
PLEKHH2	130271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	43973091	43973091	+	Silent	SNP	A	A	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	43973091	A	T	43973091	2	4	394	1	0	0	0	0	0	0	0	1	12084	204	8	5		5	PLEKHH2	2	43973091	Silent	SNP	A	TCGA-BP-5001-01A-01D-1462-08		43973091	199226282	8	22897											
IL1RL1	9173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	102956734	102956734	+	Splice_Site	SNP	T	T	G	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	102956734	T	G	102956734	5	3	394	1	0	0	0	0	0	0	1	0	7670	1652	57	5	459	5	IL1RL1	2	102956734	Splice_Site	SNP	T	TCGA-BP-5001-01A-01D-1462-08	58983643	102956734	140242639	9	22898											
KCNH7	90134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	163279898	163279898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	163279898	T	G	163279898	3	3	394	1	0	0	0	0	1	0	0	0	8044	1783	62	5	1586	5	KCNH7	2	163279898	Missense_Mutation	SNP	T	TCGA-BP-5001-01A-01D-1462-08	60323164	163279898	79919475	10	22899											
SATB2	23314	broad.mit.edu;hgsc.bcm.edu	37	2	200193631	200193631	+	Silent	SNP	T	T	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	200193631	T	A	200193631	2	1	394	1	0	0	0	0	0	0	0	1	13867	1422	50	5		5	SATB2	2	200193631	Silent	SNP	T	TCGA-BP-5001-01A-01D-1462-08	36913733	200193631	43005742	11	22900											
ATG16L1	55054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234178666	234178666	+	Silent	SNP	G	G	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	234178666	G	T	234178666	2	4	394	1	0	0	0	0	0	0	0	1	1091	1306	46	4		4	ATG16L1	2	234178666	Silent	SNP	G	TCGA-BP-5001-01A-01D-1462-08	33985035	234178666	9020707	12	22901											
ITIH3	3699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52842629	52842629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	52842629	G	A	52842629	3	1	394	1	0	0	0	0	1	0	0	0	7912	1145	40	1	2691	1	ITIH3	3	52842629	Missense_Mutation	SNP	G	TCGA-BP-5001-01A-01D-1462-08		52842629	145179801	13	22902											
MYNN	55892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	169502437	169502437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	169502437	G	T	169502437	3	4	394	1	0	0	0	0	1	0	0	0	10068	1377	48	4	1533	4	MYNN	3	169502437	Missense_Mutation	SNP	G	TCGA-BP-5001-01A-01D-1462-08	116659808	169502437	28519993	14	22903											
SH3BP2	6452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	2833702	2833702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	2833702	A	G	2833702	3	3	394	1	0	0	0	0	1	0	0	0	14258	246	9	3	1696	3	SH3BP2	4	2833702	Missense_Mutation	SNP	A	TCGA-BP-5001-01A-01D-1462-08		2833702	188320574	15	22904											
GUCY1B3	2983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	156723600	156723600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	156723600	G	A	156723600	3	1	394	1	0	0	0	0	1	0	0	0	6902	1377	48	2	1320	2	GUCY1B3	4	156723600	Missense_Mutation	SNP	G	TCGA-BP-5001-01A-01D-1462-08	153889898	156723600	34430676	16	22905											
PCDHGA2	56113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140718869	140718869	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	140718869	G	T	140718869	4	4	394	1	0	0	0	0	0	1	0	0	11561	1175	41	4	333	4	PCDHGA2	5	140718869	Nonsense_Mutation	SNP	G	TCGA-BP-5001-01A-01D-1462-08		140718869	40196391	17	22906											
LAMA4	3910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	112513053	112513053	+	Splice_Site	SNP	C	C	G	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	112513053	C	G	112513053	5	3	394	1	0	0	0	0	0	0	1	0	8615	927	32	4	5104	4	LAMA4	6	112513053	Splice_Site	SNP	C	TCGA-BP-5001-01A-01D-1462-08		112513053	58602014	18	22907											
DNAH11	8701	broad.mit.edu;hgsc.bcm.edu	37	7	21639512	21639512	+	Silent	SNP	C	C	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	21639512	C	T	21639512	2	4	394	1	0	0	0	0	0	0	0	1	4601	535	19	1		1	DNAH11	7	21639512	Silent	SNP	C	TCGA-BP-5001-01A-01D-1462-08		21639512	137499151	19	22908											
KIAA0196	9897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	126075842	126075842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	C	126075842	T	C	126075842	3	2	394	1	0	0	0	0	1	0	0	0	8168	1792	62	3	2225	3	KIAA0196	8	126075842	Missense_Mutation	SNP	T	TCGA-BP-5001-01A-01D-1462-08		126075842	20288180	20	22909											
PTCH1	5727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	98209386	98209386	+	Silent	SNP	C	C	G	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	98209386	C	G	98209386	2	3	394	1	0	0	0	0	0	0	0	1	12740	755	27	4		4	PTCH1	9	98209386	Silent	SNP	C	TCGA-BP-5001-01A-01D-1462-08		98209386	43004045	21	22910											
WAC	51322	hgsc.bcm.edu;ucsc.edu	37	10	28878756	28878756	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	-	28878756	A	-	28878756	7	5	394	1	0	1	0	1	0	0	0	0	17259	246	9	0	491	0	WAC	10	28878756	Frame_Shift_Del	DEL	A	TCGA-BP-5001-01A-01D-1462-08		28878756	106655991	22	22911											
DDX50	79009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70695795	70695795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	70695795	A	G	70695795	3	3	394	1	0	0	0	0	1	0	0	0	4370	391	14	3	1597	3	DDX50	10	70695795	Missense_Mutation	SNP	A	TCGA-BP-5001-01A-01D-1462-08	41817039	70695795	64838952	23	22912											
VWA2	340706	broad.mit.edu	37	10	116045700	116045700	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	116045700	A	A	116045700	3	1	394	1	0	0	0	0	1	0	0	0	17251	680	24	4	1038	4	VWA2	10	116045700	Missense_Mutation	SNP	C	TCGA-BP-5001-01A-01D-1462-08	45349905	116045700	19489047	24	22913											
C11orf30	56946	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	76261122	76261122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	76261122	G	A	76261122	3	1	394	1	0	0	0	0	1	0	0	0	1638	1174	41	2	3979	2	C11orf30	11	76261122	Missense_Mutation	SNP	G	TCGA-BP-5001-01A-01D-1462-08		76261122	58745394	25	22914											
CHD4	1108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6701634	6701634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	6701634	A	T	6701634	3	4	394	1	0	0	0	0	1	0	0	0	3329	304	11	5	2953	5	CHD4	12	6701634	Missense_Mutation	SNP	A	TCGA-BP-5001-01A-01D-1462-08		6701634	127150261	26	22915											
SLCO1A2	6579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21454187	21454187	+	Silent	SNP	T	T	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	21454187	T	A	21454187	2	1	394	1	0	0	0	0	0	0	0	1	14735	1538	54	5		5	SLCO1A2	12	21454187	Silent	SNP	T	TCGA-BP-5001-01A-01D-1462-08	14752553	21454187	112397708	27	22916											
PCBP2	5094	broad.mit.edu;hgsc.bcm.edu	37	12	53853119	53853119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	53853119	G	A	53853119	3	1	394	1	0	0	0	0	1	0	0	0	11508	1261	44	2	325	2	PCBP2	12	53853119	Missense_Mutation	SNP	G	TCGA-BP-5001-01A-01D-1462-08	32398932	53853119	79998776	28	22917											
GAS2L3	283431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	101017385	101017385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	101017385	G	A	101017385	3	1	394	1	0	0	0	0	1	0	0	0	6255	1174	41	2	832	2	GAS2L3	12	101017385	Missense_Mutation	SNP	G	TCGA-BP-5001-01A-01D-1462-08	47164266	101017385	32834510	29	22918											
GCN1L1	10985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	120622633	120622633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	120622633	C	T	120622633	3	4	394	1	0	0	0	0	1	0	0	0	6306	884	31	1	8060	1	GCN1L1	12	120622633	Missense_Mutation	SNP	C	TCGA-BP-5001-01A-01D-1462-08	19605248	120622633	13229262	30	22919											
FLRT2	23768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	86088842	86088842	+	Silent	SNP	C	C	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	86088842	C	T	86088842	2	4	394	1	0	0	0	0	0	0	0	1	5946	845	30	2		2	FLRT2	14	86088842	Silent	SNP	C	TCGA-BP-5001-01A-01D-1462-08		86088842	21260698	31	22920											
TRADD	8717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67190505	67190505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	C	67190505	T	C	67190505	3	2	394	1	0	0	0	0	1	0	0	0	16448	1551	54	3	895	3	TRADD	16	67190505	Missense_Mutation	SNP	T	TCGA-BP-5001-01A-01D-1462-08		67190505	23164248	32	22921											
ATMIN	23300	hgsc.bcm.edu	37	16	81069751	81069751	+	Silent	SNP	C	C	G	rs150799758	byfrequency	TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	81069751	C	G	81069751	2	3	394	1	0	0	0	0	0	0	0	1	1110	697	25	4		4	ATMIN	16	81069751	Silent	SNP	C	TCGA-BP-5001-01A-01D-1462-08	13879246	81069751	9285002	33	22922											
CHAD	1101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48543170	48543170	+	Missense_Mutation	SNP	C	C	T	rs142146358		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	48543170	C	T	48543170	3	4	394	1	0	0	0	0	1	0	0	0	3312	768	27	1	251	1	CHAD	17	48543170	Missense_Mutation	SNP	C	TCGA-BP-5001-01A-01D-1462-08		48543170	32652040	34	22923											
GRIN3B	116444	broad.mit.edu	37	19	1003373	1003374	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	1003374	G	G	1003373	7	5	394	1	0	1	1	0	0	0	0	0	6791	768	27	0	677	0	GRIN3B	19	1003373	Frame_Shift_Ins	INS	-	TCGA-BP-5001-01A-01D-1462-08		1003373	58125610	35	22924											
PTPRS	5802	broad.mit.edu	37	19	5231368	5231368	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	5231368	A	A	5231368	3	1	394	1	0	0	0	0	1	0	0	0	12824	855	30	4	3838	4	PTPRS	19	5231368	Missense_Mutation	SNP	C	TCGA-BP-5001-01A-01D-1462-08	4227995	5231368	53897615	36	22925											
PLEKHG2	64857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39915872	39915872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	G	39915872	A	G	39915872	3	3	394	1	0	0	0	0	1	0	0	0	12076	159	6	3	4169	3	PLEKHG2	19	39915872	Missense_Mutation	SNP	A	TCGA-BP-5001-01A-01D-1462-08	34684504	39915872	19213111	37	22926											
C20orf11	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	61574871	61574871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	T	61574871	C	T	61574871	3	4	394	1	0	0	0	0	1	0	0	0	2081	652	23	1	350	1	C20orf11	20	61574871	Missense_Mutation	SNP	C	TCGA-BP-5001-01A-01D-1462-08		61574871	1450649	38	22927											
RNF113A	7737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	119004755	119004755	+	Silent	SNP	G	G	A	novel		TCGA-BP-5001-01A-01D-1462-08	TCGA-BP-5001-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35f1f66f-e018-489c-915f-a12d7a15dc72	f3051a5d-409a-44db-8ad3-2cf4b12da802	A	119004755	G	A	119004755	2	1	394	1	0	0	0	0	0	0	0	1	13440	1277	45	2		2	RNF113A	23	119004755	Silent	SNP	G	TCGA-BP-5001-01A-01D-1462-08		119004755	36265805	39	22928											
SYT11	23208	hgsc.bcm.edu;ucsc.edu	37	1	155829566	155829566	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	155829566	C	-	155829566	7	5	395	1	0	1	0	1	0	0	0	0	15479	507	18	0	16	0	SYT11	1	155829566	Frame_Shift_Del	DEL	C	TCGA-BP-5004-01A-01D-1462-08		155829566	93421055	1	22929											
MEMO1	51072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32117195	32117195	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	G	32117195	T	G	32117195	3	3	395	1	0	0	0	0	1	0	0	0	9478	1435	50	5	463	5	MEMO1	2	32117195	Missense_Mutation	SNP	T	TCGA-BP-5004-01A-01D-1462-08		32117195	211082178	2	22930											
CCDC75	253635	broad.mit.edu;ucsc.edu	37	2	37319307	37319307	+	Splice_Site	SNP	G	C	C	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	C	37319307	C	C	37319307	5	2	395	1	0	0	0	0	0	0	1	0	2851	956	33	4	455	4	CCDC75	2	37319307	Splice_Site	SNP	G	TCGA-BP-5004-01A-01D-1462-08	5202112	37319307	205880066	3	22931											
KIF5C	3800	broad.mit.edu;hgsc.bcm.edu	37	2	149793902	149793902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	149793902	G	T	149793902	3	4	395	1	0	0	0	0	1	0	0	0	8314	1014	35	4	332	4	KIF5C	2	149793902	Missense_Mutation	SNP	G	TCGA-BP-5004-01A-01D-1462-08	112474595	149793902	93405471	4	22932											
TTC30A	92104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	178482340	178482340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	178482340	C	T	178482340	3	4	395	1	0	0	0	0	1	0	0	0	16710	710	25	2	911	2	TTC30A	2	178482340	Missense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08	28688438	178482340	64717033	5	22933											
TNS1	7145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	218713105	218713105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	A	218713105	C	A	218713105	3	1	395	1	0	0	0	0	1	0	0	0	16355	507	18	4	3515	4	TNS1	2	218713105	Missense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08	40230765	218713105	24486268	6	22934											
VHL	7428	hgsc.bcm.edu	37	3	10183833	10183833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	C	10183833	T	C	10183833	3	2	395	1	0	0	0	0	1	0	0	0	17174	1580	55	3	304	3	VHL	3	10183833	Missense_Mutation	SNP	T	TCGA-BP-5004-01A-01D-1462-08		10183833	187838597	7	22935											
GNAT1	2779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	50231595	50231595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	G	50231595	A	G	50231595	3	3	395	1	0	0	0	0	1	0	0	0	6518	217	8	3	671	3	GNAT1	3	50231595	Missense_Mutation	SNP	A	TCGA-BP-5004-01A-01D-1462-08	40047762	50231595	147790835	8	22936											
SFMBT1	51460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52940142	52940142	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	52940142	A	-	52940142	7	5	395	1	0	1	0	1	0	0	0	0	14170	449	16	0	161	0	SFMBT1	3	52940142	Frame_Shift_Del	DEL	A	TCGA-BP-5004-01A-01D-1462-08	2708547	52940142	145082288	9	22937											
C3orf37	56941	broad.mit.edu;hgsc.bcm.edu	37	3	129023468	129023468	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	129023468	C	T	129023468	4	4	395	1	0	0	0	0	0	1	0	0	2229	711	25	2	887	2	C3orf37	3	129023468	Nonsense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08	76083326	129023468	68998962	10	22938											
ATP13A4	84239	hgsc.bcm.edu;ucsc.edu	37	3	193159265	193159267	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	193159267	AGG	-	193159265	7	5	395	1	0	1	0	1	0	0	0	0	1126	420	15	0	1205	0	ATP13A4	3	193159265	In_Frame_Del	DEL	AGG	TCGA-BP-5004-01A-01D-1462-08	64135797	193159265	4863165	11	22939											
NDUFC1	4717	hgsc.bcm.edu;ucsc.edu	37	4	140216207	140216209	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	140216209	AAG	-	140216207	7	5	395	1	0	1	0	1	0	0	0	0	10296	131	5	0	77	0	NDUFC1	4	140216207	In_Frame_Del	DEL	AAG	TCGA-BP-5004-01A-01D-1462-08		140216207	50938069	12	22940											
DHX29	54505	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	54585151	54585151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	A	54585151	G	A	54585151	3	1	395	1	0	0	0	0	1	0	0	0	4505	1319	46	2	3176	2	DHX29	5	54585151	Missense_Mutation	SNP	G	TCGA-BP-5004-01A-01D-1462-08		54585151	126330109	13	22941											
PCDHA10	56139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140236546	140236546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	A	140236546	G	A	140236546	3	1	395	1	0	0	0	0	1	0	0	0	11527	1290	45	2	915	2	PCDHA10	5	140236546	Missense_Mutation	SNP	G	TCGA-BP-5004-01A-01D-1462-08	85651395	140236546	40678714	14	22942											
MYO6	4646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	76570739	76570739	+	Splice_Site	SNP	G	G	C	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	C	76570739	G	C	76570739	5	2	395	1	0	0	0	0	0	0	1	0	10088	1014	35	4	1527	4	MYO6	6	76570739	Splice_Site	SNP	G	TCGA-BP-5004-01A-01D-1462-08		76570739	94544328	15	22943											
MLLT4	4301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	168363200	168363200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	168363200	C	T	168363200	3	4	395	1	0	0	0	0	1	0	0	0	9636	768	27	1	5130	1	MLLT4	6	168363200	Missense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08	91792461	168363200	2751867	16	22944											
USP42	84132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	6190120	6190120	+	Silent	SNP	C	C	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	6190120	C	T	6190120	2	4	395	1	0	0	0	0	0	0	0	1	17085	784	28	2		2	USP42	7	6190120	Silent	SNP	C	TCGA-BP-5004-01A-01D-1462-08		6190120	152948543	17	22945											
GLI3	2737	broad.mit.edu;hgsc.bcm.edu	37	7	42006052	42006052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	42006052	G	T	42006052	3	4	395	1	0	0	0	0	1	0	0	0	6446	1194	42	4	2127	4	GLI3	7	42006052	Missense_Mutation	SNP	G	TCGA-BP-5004-01A-01D-1462-08	35815932	42006052	117132611	18	22946											
CCDC146	57639	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	76916144	76916144	+	Silent	SNP	C	C	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	76916144	C	T	76916144	2	4	395	1	0	0	0	0	0	0	0	1	2782	506	18	2		2	CCDC146	7	76916144	Silent	SNP	C	TCGA-BP-5004-01A-01D-1462-08	34910092	76916144	82222519	19	22947											
C7orf51	0	hgsc.bcm.edu;ucsc.edu	37	7	100086161	100086161	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	100086161	G	-	100086161	7	5	395	1	0	1	0	1	0	0	0	0	2402	1348	47	0	827	0	C7orf51	7	100086161	Frame_Shift_Del	DEL	G	TCGA-BP-5004-01A-01D-1462-08	23170017	100086161	59052502	20	22948											
RNF148	378925	broad.mit.edu;hgsc.bcm.edu	37	7	122342196	122342196	+	Silent	SNP	G	G	C	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	C	122342196	G	C	122342196	2	2	395	1	0	0	0	0	0	0	0	1	13462	987	35	4		4	RNF148	7	122342196	Silent	SNP	G	TCGA-BP-5004-01A-01D-1462-08	22256035	122342196	36796467	21	22949											
SH2D3C	10044	hgsc.bcm.edu;ucsc.edu	37	9	130502552	130502552	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	130502552	G	-	130502552	7	5	395	1	0	1	0	1	0	0	0	0	14247	1000	35	0	409	0	SH2D3C	9	130502552	Frame_Shift_Del	DEL	G	TCGA-BP-5004-01A-01D-1462-08		130502552	10710879	22	22950											
COL5A1	1289	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	137623935	137623935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	A	137623935	G	A	137623935	3	1	395	1	0	0	0	0	1	0	0	0	3698	1059	37	1	1385	1	COL5A1	9	137623935	Missense_Mutation	SNP	G	TCGA-BP-5004-01A-01D-1462-08	7121383	137623935	3589496	23	22951											
BEND7	222389	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	13523079	13523079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	G	13523079	A	G	13523079	3	3	395	1	0	0	0	0	1	0	0	0	1403	333	12	3	707	3	BEND7	10	13523079	Missense_Mutation	SNP	A	TCGA-BP-5004-01A-01D-1462-08		13523079	122011668	24	22952											
TNNT3	7140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1955173	1955173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	A	1955173	G	A	1955173	3	1	395	1	0	0	0	0	1	0	0	0	16344	1319	46	2	380	2	TNNT3	11	1955173	Missense_Mutation	SNP	G	TCGA-BP-5004-01A-01D-1462-08		1955173	133051343	25	22953											
FADS2	9415	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61608124	61608124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	C	61608124	A	C	61608124	3	2	395	1	0	0	0	0	1	0	0	0	5370	449	16	5	559	5	FADS2	11	61608124	Missense_Mutation	SNP	A	TCGA-BP-5004-01A-01D-1462-08	59652951	61608124	73398392	26	22954											
PPFIA1	8500	hgsc.bcm.edu;ucsc.edu	37	11	70172880	70172888	+	In_Frame_Del	DEL	AAATCTGAA	AAATCTGAA	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	AAATCTGAA	AAATCTGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	70172888	AAATCTGAA	-	70172880	7	5	395	1	0	1	0	1	0	0	0	0	12316	131	5	0	908	0	PPFIA1	11	70172880	In_Frame_Del	DEL	AAATCTGAA	TCGA-BP-5004-01A-01D-1462-08	8564756	70172880	64833636	27	22955											
DEFB108B	245911	broad.mit.edu;hgsc.bcm.edu	37	11	71548458	71548458	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	G	71548458	C	G	71548458	3	3	395	1	0	0	0	0	1	0	0	0	4401	825	29	4	78	4	DEFB108B	11	71548458	Missense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08	1375578	71548458	63458058	28	22956											
UVRAG	7405	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	75852292	75852292	+	Silent	SNP	A	A	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	75852292	A	T	75852292	2	4	395	1	0	0	0	0	0	0	0	1	17120	175	7	5		5	UVRAG	11	75852292	Silent	SNP	A	TCGA-BP-5004-01A-01D-1462-08	4303834	75852292	59154224	29	22957											
DIP2B	57609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	51127944	51127944	+	Silent	SNP	T	T	C	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	C	51127944	T	C	51127944	2	2	395	1	0	0	0	0	0	0	0	1	4530	1567	55	3		3	DIP2B	12	51127944	Silent	SNP	T	TCGA-BP-5004-01A-01D-1462-08		51127944	82723951	30	22958											
UNC119B	84747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121154504	121154504	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	G	121154504	C	G	121154504	3	3	395	1	0	0	0	0	1	0	0	0	16995	825	29	4	442	4	UNC119B	12	121154504	Missense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08	70026560	121154504	12697391	31	22959											
FAM70B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	114469231	114469231	+	Splice_Site	SNP	G	G	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	114469231	G	T	114469231	5	4	395	1	0	0	0	0	0	0	1	0	5613	1391	48	4	196	4	FAM70B	13	114469231	Splice_Site	SNP	G	TCGA-BP-5004-01A-01D-1462-08		114469231	700647	32	22960											
RNASE3	6037	hgsc.bcm.edu;ucsc.edu	37	14	21359893	21359893	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	21359893	G	-	21359893	7	5	395	1	0	1	0	1	0	0	0	0	13418	1339	47	0	50	0	RNASE3	14	21359893	Frame_Shift_Del	DEL	G	TCGA-BP-5004-01A-01D-1462-08		21359893	85989647	33	22961											
NUMB	8650	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	73759584	73759584	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	C	73759584	T	C	73759584	5	2	395	1	0	0	0	0	0	0	1	0	10758	1536	53	3	1671	3	NUMB	14	73759584	Splice_Site	SNP	T	TCGA-BP-5004-01A-01D-1462-08	52399691	73759584	33589956	34	22962											
CAPN3	825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42678049	42678049	+	RNA	SNP	G	G	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	42678049	G	T	42678049	1	4	395	0	1	0	0	0	0	0	0	0	2630	1305	45	4		4	CAPN3	15	42678049	RNA	SNP	G	TCGA-BP-5004-01A-01D-1462-08		42678049	59853343	35	22963											
TP53BP1	7158	hgsc.bcm.edu;ucsc.edu	37	15	43724668	43724668	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	43724668	C	-	43724668	7	5	395	1	0	1	0	1	0	0	0	0	16395	912	32	0	2582	0	TP53BP1	15	43724668	Frame_Shift_Del	DEL	C	TCGA-BP-5004-01A-01D-1462-08	1046619	43724668	58806724	36	22964											
TLN2	83660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63030474	63030474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	63030474	A	T	63030474	3	4	395	1	0	0	0	0	1	0	0	0	15960	333	12	5	3735	5	TLN2	15	63030474	Missense_Mutation	SNP	A	TCGA-BP-5004-01A-01D-1462-08	19305806	63030474	39500918	37	22965											
SEPX1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1990864	1990864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	G	1990864	C	G	1990864	3	3	395	1	0	0	0	0	1	0	0	0	14086	593	21	4	124	4	SEPX1	16	1990864	Missense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08		1990864	88363889	38	22966											
ALDOA	226	hgsc.bcm.edu;ucsc.edu	37	16	30078964	30078964	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	-	30078964	C	-	30078964	7	5	395	1	0	1	0	1	0	0	0	0	507	755	27	0	312	0	ALDOA	16	30078964	Frame_Shift_Del	DEL	C	TCGA-BP-5004-01A-01D-1462-08	28088100	30078964	60275789	39	22967											
PRPF8	10594	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1586888	1586888	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	G	1586888	T	G	1586888	3	3	395	1	0	0	0	0	1	0	0	0	12585	1464	51	5	6963	5	PRPF8	17	1586888	Missense_Mutation	SNP	T	TCGA-BP-5004-01A-01D-1462-08		1586888	79608322	40	22968											
C17orf66	256957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34185482	34185482	+	Silent	SNP	G	G	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	34185482	G	T	34185482	2	4	395	1	0	0	0	0	0	0	0	1	1876	1277	45	4		4	C17orf66	17	34185482	Silent	SNP	G	TCGA-BP-5004-01A-01D-1462-08	32598594	34185482	47009728	41	22969											
PPP1R1B	84152	broad.mit.edu	37	17	37785438	37785438	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	G	37785438	G	G	37785438	3	3	395	1	0	0	0	0	1	0	0	0	12378	507	18	4	103	4	PPP1R1B	17	37785438	Missense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08	3599956	37785438	43409772	42	22970											
LRRC59	55379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48470252	48470252	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	48470252	A	T	48470252	3	4	395	1	0	0	0	0	1	0	0	0	9022	14	1	5	771	5	LRRC59	17	48470252	Missense_Mutation	SNP	A	TCGA-BP-5004-01A-01D-1462-08	10684814	48470252	32724958	43	22971											
SERPINB4	6318	broad.mit.edu;hgsc.bcm.edu	37	18	61310791	61310791	+	Silent	SNP	G	G	C	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	C	61310791	G	C	61310791	2	2	395	1	0	0	0	0	0	0	0	1	14116	1335	47	4		4	SERPINB4	18	61310791	Silent	SNP	G	TCGA-BP-5004-01A-01D-1462-08		61310791	16766457	44	22972											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9062883	9062883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	A	9062883	G	A	9062883	3	1	395	1	0	0	0	0	1	0	0	0	9980	1261	44	2	19288	2	MUC16	19	9062883	Missense_Mutation	SNP	G	TCGA-BP-5004-01A-01D-1462-08		9062883	50066100	45	22973											
ZNF492	57615	broad.mit.edu;hgsc.bcm.edu	37	19	22836216	22836216	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	A	22836216	C	A	22836216	4	1	395	1	0	0	0	0	0	1	0	0	17955	489	17	4	17	4	ZNF492	19	22836216	Nonsense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08	13773333	22836216	36292767	46	22974											
LILRB3	11025	broad.mit.edu	37	19	54746128	54746128	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	C	54746128	C	C	54746128	3	2	395	1	0	0	0	0	1	0	0	0	8799	1194	42	4		4	LILRB3	19	54746128	Missense_Mutation	SNP	G	TCGA-BP-5004-01A-01D-1462-08	31909912	54746128	4382855	47	22975											
EEF1A2	1917	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62122020	62122020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	T	62122020	C	T	62122020	3	4	395	1	0	0	0	0	1	0	0	0	4926	710	25	2	562	2	EEF1A2	20	62122020	Missense_Mutation	SNP	C	TCGA-BP-5004-01A-01D-1462-08		62122020	903500	48	22976											
CHAF1B	8208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37783835	37783835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5004-01A-01D-1462-08	TCGA-BP-5004-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e3d82fe4-b491-4172-86da-429cf16508de	5df4ce0c-d0cf-4b9e-8182-ee09f3a2be9c	G	37783835	A	G	37783835	3	3	395	1	0	0	0	0	1	0	0	0	3314	159	6	3	1032	3	CHAF1B	21	37783835	Missense_Mutation	SNP	A	TCGA-BP-5004-01A-01D-1462-08		37783835	10346060	49	22977											
GPN1	11321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27851883	27851883	+	RNA	SNP	C	C	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	27851883	C	A	27851883	1	1	396	0	1	0	0	0	0	0	0	0	6624	609	21	4		4	GPN1	2	27851883	RNA	SNP	C	TCGA-BP-5006-01A-01D-1462-08		27851883	215347490	1	22978											
FABP1	2168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	88425757	88425757	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	C	88425757	G	C	88425757	3	2	396	1	0	0	0	0	1	0	0	0	5359	1357	47	4	217	4	FABP1	2	88425757	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08	60573874	88425757	154773616	2	22979											
C2orf69	205327	hgsc.bcm.edu;ucsc.edu	37	2	200790244	200790244	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	-	200790244	A	-	200790244	7	5	396	1	0	1	0	1	0	0	0	0	2190	363	13	0	799	0	C2orf69	2	200790244	Frame_Shift_Del	DEL	A	TCGA-BP-5006-01A-01D-1462-08	112364487	200790244	42409129	3	22980											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183788	10183788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	T	10183788	C	T	10183788	3	4	396	1	0	0	0	0	1	0	0	0	17174	623	22	2	259	2	VHL	3	10183788	Missense_Mutation	SNP	C	TCGA-BP-5006-01A-01D-1462-08		10183788	187838642	4	22981											
SETD2	29072	broad.mit.edu	37	3	47161671	47161671	+	Splice_Site	SNP	C	G	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	47161671	G	G	47161671	5	3	396	1	0	0	0	0	0	0	1	0	14144	521	18	4	3315	4	SETD2	3	47161671	Splice_Site	SNP	C	TCGA-BP-5006-01A-01D-1462-08	36977883	47161671	150860759	5	22982											
SEC61A1	29927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	127785928	127785928	+	Silent	SNP	C	C	T	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	T	127785928	C	T	127785928	2	4	396	1	0	0	0	0	0	0	0	1	14013	813	29	2		2	SEC61A1	3	127785928	Silent	SNP	C	TCGA-BP-5006-01A-01D-1462-08	80624257	127785928	70236502	6	22983											
NMNAT3	349565	hgsc.bcm.edu;ucsc.edu	37	3	139279902	139279902	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	-	139279902	T	-	139279902	7	5	396	1	0	1	0	1	0	0	0	0	10507	1580	55	0	53	0	NMNAT3	3	139279902	Frame_Shift_Del	DEL	T	TCGA-BP-5006-01A-01D-1462-08	11493974	139279902	58742528	7	22984											
P2RY14	9934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	150931635	150931635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	150931635	A	G	150931635	3	3	396	1	0	0	0	0	1	0	0	0	11358	101	4	3	550	3	P2RY14	3	150931635	Missense_Mutation	SNP	A	TCGA-BP-5006-01A-01D-1462-08	11651733	150931635	47090795	8	22985											
ARHGAP10	79658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	148861016	148861016	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	148861016	T	A	148861016	3	1	396	1	0	0	0	0	1	0	0	0	862	1722	60	5	1323	5	ARHGAP10	4	148861016	Missense_Mutation	SNP	T	TCGA-BP-5006-01A-01D-1462-08		148861016	42293260	9	22986											
GRIA2	2891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	158257620	158257620	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	158257620	C	G	158257620	3	3	396	1	0	0	0	0	1	0	0	0	6775	913	32	4	1607	4	GRIA2	4	158257620	Missense_Mutation	SNP	C	TCGA-BP-5006-01A-01D-1462-08	9396604	158257620	32896656	10	22987											
IL31RA	133396	broad.mit.edu;hgsc.bcm.edu	37	5	55203210	55203210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	C	55203210	T	C	55203210	3	2	396	1	0	0	0	0	1	0	0	0	7698	1522	53	3	1314	3	IL31RA	5	55203210	Missense_Mutation	SNP	T	TCGA-BP-5006-01A-01D-1462-08		55203210	125712050	11	22988											
GALNT10	55568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	153796478	153796478	+	Silent	SNP	G	G	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	153796478	G	A	153796478	2	1	396	1	0	0	0	0	0	0	0	1	6215	1020	36	2		2	GALNT10	5	153796478	Silent	SNP	G	TCGA-BP-5006-01A-01D-1462-08	98593268	153796478	27118782	12	22989											
AGXT2L2	85007	hgsc.bcm.edu	37	5	177649405	177649406	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	177649406	-	G	177649405	7	5	396	1	0	1	1	0	0	0	0	0	407	1580	55	0	494	0	AGXT2L2	5	177649405	Frame_Shift_Ins	INS	-	TCGA-BP-5006-01A-01D-1462-08	23852927	177649405	3265855	13	22990											
SYCP2L	221711	broad.mit.edu;ucsc.edu	37	6	10898272	10898272	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	10898272	A	A	10898272	3	1	396	1	0	0	0	0	1	0	0	0	15445	1174	41	2	383	2	SYCP2L	6	10898272	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08		10898272	160216795	14	22991											
GTPBP2	54676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43592645	43592645	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	T	43592645	A	T	43592645	3	4	396	1	0	0	0	0	1	0	0	0	6887	275	10	5	976	5	GTPBP2	6	43592645	Missense_Mutation	SNP	A	TCGA-BP-5006-01A-01D-1462-08	32694373	43592645	127522422	15	22992											
AIM1	202	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	107009363	107009363	+	Silent	SNP	T	T	C	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	C	107009363	T	C	107009363	2	2	396	1	0	0	0	0	0	0	0	1	430	1644	57	3		3	AIM1	6	107009363	Silent	SNP	T	TCGA-BP-5006-01A-01D-1462-08	63416718	107009363	64105704	16	22993											
TYW1	55253	broad.mit.edu;hgsc.bcm.edu	37	7	66703498	66703498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	T	66703498	G	T	66703498	3	4	396	1	0	0	0	0	1	0	0	0	16830	991	35	4	2243	4	TYW1	7	66703498	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08		66703498	92435165	17	22994											
WASL	8976	hgsc.bcm.edu	37	7	123332871	123332871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	123332871	G	A	123332871	3	1	396	1	0	0	0	0	1	0	0	0	17268	1232	43	2	652	2	WASL	7	123332871	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08	56629373	123332871	35805792	18	22995											
KLHDC10	23008	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129761893	129761893	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	129761893	G	A	129761893	5	1	396	1	0	0	0	0	0	0	1	0	8362	1014	35	2	648	2	KLHDC10	7	129761893	Splice_Site	SNP	G	TCGA-BP-5006-01A-01D-1462-08	6429022	129761893	29376770	19	22996											
MFHAS1	9258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	8747924	8747924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	8747924	A	G	8747924	3	3	396	1	0	0	0	0	1	0	0	0	9528	101	4	3	525	3	MFHAS1	8	8747924	Missense_Mutation	SNP	A	TCGA-BP-5006-01A-01D-1462-08		8747924	137616098	20	22997											
CHD7	55636	broad.mit.edu;ucsc.edu	37	8	61768568	61768568	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	61768568	A	A	61768568	3	1	396	1	0	0	0	0	1	0	0	0	3332	1377	48	2	7097	2	CHD7	8	61768568	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08	53020644	61768568	84595454	21	22998											
CDK5RAP2	55755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123292386	123292386	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	123292386	C	G	123292386	3	3	396	1	0	0	0	0	1	0	0	0	3148	797	28	4	5110	4	CDK5RAP2	9	123292386	Missense_Mutation	SNP	C	TCGA-BP-5006-01A-01D-1462-08		123292386	17921045	22	22999											
PLXDC2	84898	broad.mit.edu;hgsc.bcm.edu	37	10	20465933	20465933	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	20465933	C	G	20465933	3	3	396	1	0	0	0	0	1	0	0	0	12125	876	31	4	919	4	PLXDC2	10	20465933	Missense_Mutation	SNP	C	TCGA-BP-5006-01A-01D-1462-08		20465933	115068814	23	23000											
H2AFY2	55506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	71868913	71868913	+	Silent	SNP	G	G	A	rs41277966	bycluster;byfrequency;by1000genomes	TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	71868913	G	A	71868913	2	1	396	1	0	0	0	0	0	0	0	1	6937	1103	39	1		1	H2AFY2	10	71868913	Silent	SNP	G	TCGA-BP-5006-01A-01D-1462-08	51402980	71868913	63665834	24	23001											
PCGF6	84108	broad.mit.edu	37	10	105110747	105110747	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	T	105110747	T	T	105110747	3	4	396	1	0	0	0	0	1	0	0	0	11585	1116	39	4	1015	4	PCGF6	10	105110747	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08	33241834	105110747	30424000	25	23002											
DPPA3	359787	broad.mit.edu;hgsc.bcm.edu	37	12	7869602	7869602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	7869602	G	A	7869602	3	1	396	1	0	0	0	0	1	0	0	0	4737	1145	40	1	423	1	DPPA3	12	7869602	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08		7869602	125982293	26	23003											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53662902	53662902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	53662902	A	G	53662902	3	3	396	1	0	0	0	0	1	0	0	0	5255	188	7	3	182	3	ESPL1	12	53662902	Missense_Mutation	SNP	A	TCGA-BP-5006-01A-01D-1462-08	45793300	53662902	80188993	27	23004											
C12orf64	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	80650146	80650146	+	Silent	SNP	A	A	C	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	C	80650146	A	C	80650146	2	2	396	1	0	0	0	0	0	0	0	1	1709	352	13	5		5	C12orf64	12	80650146	Silent	SNP	A	TCGA-BP-5006-01A-01D-1462-08	26987244	80650146	53201749	28	23005											
HSPH1	10808	broad.mit.edu	37	13	31712675	31712675	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	T	31712675	T	T	31712675	3	4	396	1	0	0	0	0	1	0	0	0	7438	835	29	2	345	2	HSPH1	13	31712675	Missense_Mutation	SNP	C	TCGA-BP-5006-01A-01D-1462-08		31712675	83457203	29	23006											
KIAA0564	0	hgsc.bcm.edu	37	13	42273315	42273324	+	Frame_Shift_Del	DEL	GTCCACAAAG	GTCCACAAAG	-	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	GTCCACAAAG	GTCCACAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	-	42273324	GTCCACAAAG	-	42273315	7	5	396	1	0	1	0	1	0	0	0	0	8192	1020	36	0	2329	0	KIAA0564	13	42273315	Frame_Shift_Del	DEL	GTCCACAAAG	TCGA-BP-5006-01A-01D-1462-08	10560640	42273315	72896563	30	23007											
FNDC3A	22862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	49776041	49776041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	T	49776041	A	T	49776041	3	4	396	1	0	0	0	0	1	0	0	0	5976	69	3	5	3194	5	FNDC3A	13	49776041	Missense_Mutation	SNP	A	TCGA-BP-5006-01A-01D-1462-08	7502726	49776041	65393837	31	23008											
NALCN	259232	broad.mit.edu;hgsc.bcm.edu	37	13	101720364	101720364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	101720364	G	A	101720364	3	1	396	1	0	0	0	0	1	0	0	0	10155	1174	41	2	888	2	NALCN	13	101720364	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08	51944323	101720364	13449514	32	23009											
CDC42BPB	9578	broad.mit.edu	37	14	103418834	103418834	+	Splice_Site	SNP	C	A	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	103418834	A	A	103418834	5	1	396	1	0	0	0	0	0	0	1	0	3075	521	18	4	2018	4	CDC42BPB	14	103418834	Splice_Site	SNP	C	TCGA-BP-5006-01A-01D-1462-08		103418834	3930706	33	23010											
SCNN1B	6338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	23359975	23359975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	23359975	G	A	23359975	3	1	396	1	0	0	0	0	1	0	0	0	13941	1116	39	1	57	1	SCNN1B	16	23359975	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08		23359975	66994778	34	23011											
FASN	2194	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	80039936	80039936	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	80039936	T	G	80039936	3	3	396	1	0	0	0	0	1	0	0	0	5690	1812	63	5	1455	5	FASN	17	80039936	Missense_Mutation	SNP	T	TCGA-BP-5006-01A-01D-1462-08		80039936	1155274	35	23012											
METTL4	64863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	2547514	2547514	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	C	2547514	G	C	2547514	4	2	396	1	0	0	0	0	0	1	0	0	9509	1294	45	4	520	4	METTL4	18	2547514	Nonsense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08		2547514	75529734	36	23013											
UNC13A	23025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17760372	17760372	+	Silent	SNP	G	G	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	17760372	G	A	17760372	2	1	396	1	0	0	0	0	0	0	0	1	16996	1048	37	1		1	UNC13A	19	17760372	Silent	SNP	G	TCGA-BP-5006-01A-01D-1462-08		17760372	41368611	37	23014											
RINL	126432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39360226	39360226	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	39360226	C	G	39360226	3	3	396	1	0	0	0	0	1	0	0	0	13388	796	28	4	251	4	RINL	19	39360226	Missense_Mutation	SNP	C	TCGA-BP-5006-01A-01D-1462-08	21599854	39360226	19768757	38	23015											
ZNF428	126299	broad.mit.edu	37	19	44112165	44112165	+	Missense_Mutation	SNP	G	T	T	rs151333697	alternate_allele	TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	T	44112165	T	T	44112165	3	4	396	1	0	0	0	0	1	0	0	0	17913	1136	40	4	399	4	ZNF428	19	44112165	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08	4751939	44112165	15016818	39	23016											
C20orf185	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31657707	31657707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	A	31657707	G	A	31657707	3	1	396	1	0	0	0	0	1	0	0	0	2099	1145	40	1	1205	1	C20orf185	20	31657707	Missense_Mutation	SNP	G	TCGA-BP-5006-01A-01D-1462-08		31657707	31367813	40	23017											
SPIN3	169981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	57020792	57020794	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	-	57020794	GAG	-	57020792	7	5	396	1	0	1	0	1	0	0	0	0	15067	933	33	0	191	0	SPIN3	23	57020792	In_Frame_Del	DEL	GAG	TCGA-BP-5006-01A-01D-1462-08		57020792	98249768	41	23018											
GPR112	139378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135441605	135441605	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	-	135441605	A	-	135441605	7	5	396	1	0	1	0	1	0	0	0	0	6636	247	9	0	7165	0	GPR112	23	135441605	Frame_Shift_Del	DEL	A	TCGA-BP-5006-01A-01D-1462-08	78420813	135441605	19828955	42	23019											
FLNA	2316	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153594983	153594983	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5006-01A-01D-1462-08	TCGA-BP-5006-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11fb962b-b4b8-46f4-bde4-3f87309e94f3	bab0bd83-abc3-4e81-a927-e65cf576777d	G	153594983	T	G	153594983	3	3	396	1	0	0	0	0	1	0	0	0	5940	1821	63	5	7099	5	FLNA	23	153594983	Missense_Mutation	SNP	T	TCGA-BP-5006-01A-01D-1462-08	18153378	153594983	1675577	43	23020											
VHL	7428	hgsc.bcm.edu	37	3	10183809	10183809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5007-01A-01D-1392-10	TCGA-BP-5007-11A-01D-1392-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	1e0b2622-e2ea-4abe-a70c-a248b11fd937	3c7e187c-b62f-430d-9f0c-f16b2b73186a	T	10183809	G	T	10183809	3	4	397	1	0	0	0	0	1	0	0	0	17174	1203	42	4	280	4	VHL	3	10183809	Missense_Mutation	SNP	G	TCGA-BP-5007-01A-01D-1392-10		10183809	187838621	1	23021											
MTOR	2475	broad.mit.edu	37	1	11217230	11217230	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	A	11217230	A	A	11217230	3	1	398	1	0	0	0	0	1	0	0	0	9961	710	25	4	3317	4	MTOR	1	11217230	Missense_Mutation	SNP	C	TCGA-BP-5007-01A-01D-1462-08		11217230	238033391	1	23022											
GPN2	54707	broad.mit.edu;hgsc.bcm.edu	37	1	27216524	27216524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	C	27216524	T	C	27216524	3	2	398	1	0	0	0	0	1	0	0	0	6625	1792	62	3	888	3	GPN2	1	27216524	Missense_Mutation	SNP	T	TCGA-BP-5007-01A-01D-1462-08	15999294	27216524	222034097	2	23023											
MYSM1	114803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	59125681	59125681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	A	59125681	T	A	59125681	3	1	398	1	0	0	0	0	1	0	0	0	10108	1490	52	5	15	5	MYSM1	1	59125681	Missense_Mutation	SNP	T	TCGA-BP-5007-01A-01D-1462-08	31909157	59125681	190124940	3	23024											
SUPT7L	9913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27880496	27880497	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	-	27880497	AG	-	27880496	7	5	398	1	0	1	0	1	0	0	0	0	15413	188	7	0	796	0	SUPT7L	2	27880496	Frame_Shift_Del	DEL	AG	TCGA-BP-5007-01A-01D-1462-08		27880496	215318877	4	23025											
HAPLN1	1404	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	82948369	82948369	+	Silent	SNP	G	G	T	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	T	82948369	G	T	82948369	2	4	398	1	0	0	0	0	0	0	0	1	6961	1277	45	4		4	HAPLN1	5	82948369	Silent	SNP	G	TCGA-BP-5007-01A-01D-1462-08		82948369	97966891	5	23026											
SLC17A4	10050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	25770630	25770630	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	G	25770630	C	G	25770630	3	3	398	1	0	0	0	0	1	0	0	0	14432	827	29	4	564	4	SLC17A4	6	25770630	Missense_Mutation	SNP	C	TCGA-BP-5007-01A-01D-1462-08		25770630	145344437	6	23027											
ZSCAN16	80345	hgsc.bcm.edu;ucsc.edu	37	6	28093441	28093441	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	-	28093441	T	-	28093441	7	5	398	1	0	1	0	1	0	0	0	0	18241	1464	51	0	222	0	ZSCAN16	6	28093441	Frame_Shift_Del	DEL	T	TCGA-BP-5007-01A-01D-1462-08	2322811	28093441	143021626	7	23028											
AKR1B15	441282	broad.mit.edu;hgsc.bcm.edu	37	7	134254201	134254201	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	C	134254201	A	C	134254201	3	2	398	1	0	0	0	0	1	0	0	0	468	247	9	5	365	5	AKR1B15	7	134254201	Missense_Mutation	SNP	A	TCGA-BP-5007-01A-01D-1462-08		134254201	24884462	8	23029											
DOLPP1	57171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131851258	131851258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	C	131851258	A	C	131851258	3	2	398	1	0	0	0	0	1	0	0	0	4706	130	5	5	719	5	DOLPP1	9	131851258	Missense_Mutation	SNP	A	TCGA-BP-5007-01A-01D-1462-08		131851258	9362173	9	23030											
DDX31	64794	hgsc.bcm.edu	37	9	135545604	135545607	+	Frame_Shift_Del	DEL	TGAA	TGAA	-	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	TGAA	TGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	-	135545607	TGAA	-	135545604	7	5	398	1	0	1	0	1	0	0	0	0	4358	1567	55	0	2609	0	DDX31	9	135545604	Frame_Shift_Del	DEL	TGAA	TCGA-BP-5007-01A-01D-1462-08	3694346	135545604	5667827	10	23031											
RUFY2	55680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70140991	70140991	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	A	70140991	G	A	70140991	4	1	398	1	0	0	0	0	0	1	0	0	13752	1328	46	2	860	2	RUFY2	10	70140991	Nonsense_Mutation	SNP	G	TCGA-BP-5007-01A-01D-1462-08		70140991	65393756	11	23032											
IFIT3	3437	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	91099779	91099779	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	-	91099779	T	-	91099779	7	5	398	1	0	1	0	1	0	0	0	0	7531	1493	52	0	1382	0	IFIT3	10	91099779	Frame_Shift_Del	DEL	T	TCGA-BP-5007-01A-01D-1462-08	20958788	91099779	44434968	12	23033											
C10orf118	55088	broad.mit.edu;hgsc.bcm.edu	37	10	115885644	115885644	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	A	115885644	C	A	115885644	5	1	398	1	0	0	0	0	0	0	1	0	1589	521	18	4	90	4	C10orf118	10	115885644	Splice_Site	SNP	C	TCGA-BP-5007-01A-01D-1462-08	24785865	115885644	19649103	13	23034											
MS4A12	54860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60265014	60265014	+	Missense_Mutation	SNP	C	C	G	rs146116909		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	G	60265014	C	G	60265014	3	3	398	1	0	0	0	0	1	0	0	0	9863	855	30	4	225	4	MS4A12	11	60265014	Missense_Mutation	SNP	C	TCGA-BP-5007-01A-01D-1462-08		60265014	74741502	14	23035											
DAGLA	747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61495757	61495757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	A	61495757	G	A	61495757	3	1	398	1	0	0	0	0	1	0	0	0	4228	1059	37	1	791	1	DAGLA	11	61495757	Missense_Mutation	SNP	G	TCGA-BP-5007-01A-01D-1462-08	1230743	61495757	73510759	15	23036											
HOXC8	3224	broad.mit.edu;ucsc.edu	37	12	54403161	54403161	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	A	54403161	A	A	54403161	3	1	398	1	0	0	0	0	1	0	0	0	7323	767	27	4	95	4	HOXC8	12	54403161	Missense_Mutation	SNP	C	TCGA-BP-5007-01A-01D-1462-08		54403161	79448734	16	23037											
VEZT	55591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	95645766	95645766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	T	95645766	A	T	95645766	3	4	398	1	0	0	0	0	1	0	0	0	17168	11	1	5	93	5	VEZT	12	95645766	Missense_Mutation	SNP	A	TCGA-BP-5007-01A-01D-1462-08	41242605	95645766	38206129	17	23038											
GPC5	2262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	92345764	92345764	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	T	92345764	A	T	92345764	3	4	398	1	0	0	0	0	1	0	0	0	6608	295	11	5	659	5	GPC5	13	92345764	Missense_Mutation	SNP	A	TCGA-BP-5007-01A-01D-1462-08		92345764	22824114	18	23039											
FAM179B	23116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	45537687	45537687	+	Silent	SNP	C	C	T	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	T	45537687	C	T	45537687	2	4	398	1	0	0	0	0	0	0	0	1	5510	912	32	2		2	FAM179B	14	45537687	Silent	SNP	C	TCGA-BP-5007-01A-01D-1462-08		45537687	61811853	19	23040											
WDR72	256764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	53908347	53908347	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	C	53908347	G	C	53908347	3	2	398	1	0	0	0	0	1	0	0	0	17334	933	33	4	1276	4	WDR72	15	53908347	Missense_Mutation	SNP	G	TCGA-BP-5007-01A-01D-1462-08		53908347	48623045	20	23041											
PIF1	80119	hgsc.bcm.edu	37	15	65114501	65114502	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	G	65114502	-	G	65114501	7	5	398	1	0	1	1	0	0	0	0	0	11890	188	7	0	1184	0	PIF1	15	65114501	Frame_Shift_Ins	INS	-	TCGA-BP-5007-01A-01D-1462-08	11206154	65114501	37416891	21	23042											
IFT140	9742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1639724	1639724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	T	1639724	C	T	1639724	3	4	398	1	0	0	0	0	1	0	0	0	7563	797	28	2	3796	2	IFT140	16	1639724	Missense_Mutation	SNP	C	TCGA-BP-5007-01A-01D-1462-08		1639724	88715029	22	23043											
TBC1D10B	26000	broad.mit.edu	37	16	30380671	30380671	+	Silent	SNP	C	T	T	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	T	30380671	T	T	30380671	2	4	398	1	0	0	0	0	0	0	0	1	15611	842	30	2		2	TBC1D10B	16	30380671	Silent	SNP	C	TCGA-BP-5007-01A-01D-1462-08	28740947	30380671	59974082	23	23044											
KIF19	124602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72340956	72340956	+	Silent	SNP	C	C	A	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	A	72340956	C	A	72340956	2	1	398	1	0	0	0	0	0	0	0	1	8289	581	21	4		4	KIF19	17	72340956	Silent	SNP	C	TCGA-BP-5007-01A-01D-1462-08		72340956	8854254	24	23045											
LMAN1	3998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	57026429	57026429	+	Silent	SNP	C	C	T	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	T	57026429	C	T	57026429	2	4	398	1	0	0	0	0	0	0	0	1	8843	465	17	2		2	LMAN1	18	57026429	Silent	SNP	C	TCGA-BP-5007-01A-01D-1462-08		57026429	21050819	25	23046											
C19orf26	255057	broad.mit.edu;hgsc.bcm.edu	37	19	1234610	1234610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	C	1234610	T	C	1234610	3	2	398	1	0	0	0	0	1	0	0	0	1918	1696	59	3	790	3	C19orf26	19	1234610	Missense_Mutation	SNP	T	TCGA-BP-5007-01A-01D-1462-08		1234610	57894373	26	23047											
DOT1L	84444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2223398	2223398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	A	2223398	G	A	2223398	3	1	398	1	0	0	0	0	1	0	0	0	4711	1116	39	1	3607	1	DOT1L	19	2223398	Missense_Mutation	SNP	G	TCGA-BP-5007-01A-01D-1462-08	988788	2223398	56905585	27	23048											
ZNF100	163227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	21909595	21909595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	T	21909595	G	T	21909595	3	4	398	1	0	0	0	0	1	0	0	0	17725	1290	45	4	113	4	ZNF100	19	21909595	Missense_Mutation	SNP	G	TCGA-BP-5007-01A-01D-1462-08	19686197	21909595	37219388	28	23049											
PARD6B	84612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	49366663	49366664	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	-	49366664	AA	-	49366663	7	5	398	1	0	1	0	1	0	0	0	0	11453	246	9	0	767	0	PARD6B	20	49366663	Frame_Shift_Del	DEL	AA	TCGA-BP-5007-01A-01D-1462-08		49366663	13658857	29	23050											
SFRS15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	33066569	33066569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5007-01A-01D-1462-08	TCGA-BP-5007-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	830e29e4-acf5-4247-b2d4-c19ad859820f	42a08dce-9507-40d4-80f8-9b0f18ddd0c4	T	33066569	C	T	33066569	3	4	398	1	0	0	0	0	1	0	0	0	14184	507	18	2	2213	2	SFRS15	21	33066569	Missense_Mutation	SNP	C	TCGA-BP-5007-01A-01D-1462-08		33066569	15063326	30	23051											
VHL	7428	hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	A	rs5030807	bycluster	TCGA-BP-5008-01A-01D-1392-10	TCGA-BP-5008-11A-01D-1392-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	70d9fb04-75b3-445f-8c8a-0004211428e3	053cd8bf-5805-41a8-ac61-78e77051a4d6	A	10183797	T	A	10183797	3	1	399	1	0	0	0	0	1	0	0	0	17174	1551	54	5	268	5	VHL	3	10183797	Missense_Mutation	SNP	T	TCGA-BP-5008-01A-01D-1392-10		10183797	187838633	1	23052											
AIM1L	55057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26663759	26663759	+	Silent	SNP	G	G	A	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	A	26663759	G	A	26663759	2	1	400	1	0	0	0	0	0	0	0	1	431	1161	41	2		2	AIM1L	1	26663759	Silent	SNP	G	TCGA-BP-5008-01A-01D-1462-08		26663759	222586862	1	23053											
C1orf198	84886	broad.mit.edu	37	1	230979640	230979640	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	230979640	T	T	230979640	3	4	400	1	0	0	0	0	1	0	0	0	2028	272	10	5	604	5	C1orf198	1	230979640	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08	204315881	230979640	18270981	2	23054											
ROCK2	9475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11361380	11361380	+	Silent	SNP	T	T	C	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	C	11361380	T	C	11361380	2	2	400	1	0	0	0	0	0	0	0	1	13531	1606	56	3		3	ROCK2	2	11361380	Silent	SNP	T	TCGA-BP-5008-01A-01D-1462-08		11361380	231837993	3	23055											
PLEKHH2	130271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	43924441	43924441	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	C	43924441	A	C	43924441	3	2	400	1	0	0	0	0	1	0	0	0	12084	101	4	5	656	5	PLEKHH2	2	43924441	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08	32563061	43924441	199274932	4	23056											
DBI	1622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	120129819	120129819	+	Splice_Site	SNP	A	A	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	120129819	A	T	120129819	5	4	400	1	0	0	0	0	0	0	1	0	4253	202	7	5	509	5	DBI	2	120129819	Splice_Site	SNP	A	TCGA-BP-5008-01A-01D-1462-08	76205378	120129819	123069554	5	23057											
DNAH7	56171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	196837108	196837108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	C	196837108	A	C	196837108	3	2	400	1	0	0	0	0	1	0	0	0	4608	304	11	5	10358	5	DNAH7	2	196837108	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08	76707289	196837108	46362265	6	23058											
RASSF6	166824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	74459276	74459276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	C	74459276	A	C	74459276	3	2	400	1	0	0	0	0	1	0	0	0	13103	188	7	5	866	5	RASSF6	4	74459276	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08		74459276	116695000	7	23059											
FAT4	79633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	126389800	126389800	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	C	126389800	G	C	126389800	3	2	400	1	0	0	0	0	1	0	0	0	5699	1310	46	4	12075	4	FAT4	4	126389800	Missense_Mutation	SNP	G	TCGA-BP-5008-01A-01D-1462-08	51930524	126389800	64764476	8	23060	277	2									
FAT4	79633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	126389801	126389801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	A	126389801	C	A	126389801	3	1	400	1	0	0	0	0	1	0	0	0	5699	797	28	4	12076	4	FAT4	4	126389801	Missense_Mutation	SNP	C	TCGA-BP-5008-01A-01D-1462-08	1	126389801	64764475	9	23061	277	2									
FBXO38	81545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147781573	147781573	+	Silent	SNP	A	A	G	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	G	147781573	A	G	147781573	2	3	400	1	0	0	0	0	0	0	0	1	5753	436	16	3		3	FBXO38	5	147781573	Silent	SNP	A	TCGA-BP-5008-01A-01D-1462-08		147781573	33133687	10	23062											
ADAMTS2	9509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	178579193	178579193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	G	178579193	T	G	178579193	3	3	400	1	0	0	0	0	1	0	0	0	265	1821	63	5	2183	5	ADAMTS2	5	178579193	Missense_Mutation	SNP	T	TCGA-BP-5008-01A-01D-1462-08	30797620	178579193	2336067	11	23063											
SCAND3	114821	broad.mit.edu;ucsc.edu	37	6	28542935	28542935	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	A	28542935	A	A	28542935	3	1	400	1	0	0	0	0	1	0	0	0	13889	1580	55	5	2438	5	SCAND3	6	28542935	Missense_Mutation	SNP	T	TCGA-BP-5008-01A-01D-1462-08		28542935	142572132	12	23064											
PLEKHG1	57480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	151153138	151153138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	C	151153138	T	C	151153138	3	2	400	1	0	0	0	0	1	0	0	0	12075	1580	55	3	2945	3	PLEKHG1	6	151153138	Missense_Mutation	SNP	T	TCGA-BP-5008-01A-01D-1462-08	122610203	151153138	19961929	13	23065											
HECW1	23072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	43400541	43400541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	43400541	A	T	43400541	3	4	400	1	0	0	0	0	1	0	0	0	7049	43	2	5	531	5	HECW1	7	43400541	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08		43400541	115738122	14	23066											
ZNF862	643641	broad.mit.edu	37	7	149544912	149544912	+	Silent	SNP	C	A	A	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	A	149544912	A	A	149544912	2	1	400	1	0	0	0	0	0	0	0	1	18207	668	24	4		4	ZNF862	7	149544912	Silent	SNP	C	TCGA-BP-5008-01A-01D-1462-08	106144371	149544912	9593751	15	23067											
RPL30	6156	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	99054939	99054939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	C	99054939	T	C	99054939	3	2	400	1	0	0	0	0	1	0	0	0	13593	1754	61	3	123	3	RPL30	8	99054939	Missense_Mutation	SNP	T	TCGA-BP-5008-01A-01D-1462-08		99054939	47309083	16	23068											
IFNA5	3442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	21304871	21304871	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	G	21304871	C	G	21304871	3	3	400	1	0	0	0	0	1	0	0	0	7547	565	20	4	188	4	IFNA5	9	21304871	Missense_Mutation	SNP	C	TCGA-BP-5008-01A-01D-1462-08		21304871	119908560	17	23069											
ABCA1	19	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	107564349	107564349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	107564349	G	T	107564349	3	4	400	1	0	0	0	0	1	0	0	0	28	991	35	4	2169	4	ABCA1	9	107564349	Missense_Mutation	SNP	G	TCGA-BP-5008-01A-01D-1462-08	86259478	107564349	33649082	18	23070											
SLC29A3	55315	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	73111405	73111405	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	G	73111405	C	G	73111405	3	3	400	1	0	0	0	0	1	0	0	0	14549	565	20	4	484	4	SLC29A3	10	73111405	Missense_Mutation	SNP	C	TCGA-BP-5008-01A-01D-1462-08		73111405	62423342	19	23071											
MYST4	0	broad.mit.edu	37	10	76789332	76789332	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	76789332	T	T	76789332	3	4	400	1	0	0	0	0	1	0	0	0	10112	333	12	5	4812	5	MYST4	10	76789332	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08	3677927	76789332	58745415	20	23072											
BTAF1	9044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	93695500	93695500	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	93695500	A	T	93695500	3	4	400	1	0	0	0	0	1	0	0	0	1538	72	3	5	107	5	BTAF1	10	93695500	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08	16906168	93695500	41839247	21	23073											
LOXL4	84171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	100015482	100015482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	G	100015482	C	G	100015482	3	3	400	1	0	0	0	0	1	0	0	0	8909	508	18	4	851	4	LOXL4	10	100015482	Missense_Mutation	SNP	C	TCGA-BP-5008-01A-01D-1462-08	6319982	100015482	35519265	22	23074											
SLCO1B1	10599	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21353532	21353532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	A	21353532	G	A	21353532	3	1	400	1	0	0	0	0	1	0	0	0	14736	1261	44	2	1091	2	SLCO1B1	12	21353532	Missense_Mutation	SNP	G	TCGA-BP-5008-01A-01D-1462-08		21353532	112498363	23	23075											
C12orf10	60314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53700821	53700821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	A	53700821	G	A	53700821	3	1	400	1	0	0	0	0	1	0	0	0	1676	1319	46	2	1045	2	C12orf10	12	53700821	Missense_Mutation	SNP	G	TCGA-BP-5008-01A-01D-1462-08	32347289	53700821	80151074	24	23076	278	2									
C12orf10	60314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53700822	53700822	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	A	53700822	C	A	53700822	4	1	400	1	0	0	0	0	0	1	0	0	1676	718	25	4	1046	4	C12orf10	12	53700822	Nonsense_Mutation	SNP	C	TCGA-BP-5008-01A-01D-1462-08	1	53700822	80151073	25	23077	278	2									
CS	1431	broad.mit.edu;hgsc.bcm.edu	37	12	56669791	56669791	+	Silent	SNP	G	G	A	rs146737473		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	A	56669791	G	A	56669791	2	1	400	1	0	0	0	0	0	0	0	1	3926	1277	45	2		2	CS	12	56669791	Silent	SNP	G	TCGA-BP-5008-01A-01D-1462-08	2968969	56669791	77182104	26	23078											
DIAPH3	81624	broad.mit.edu;hgsc.bcm.edu	37	13	60584726	60584726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	60584726	A	T	60584726	3	4	400	1	0	0	0	0	1	0	0	0	4522	446	16	5	2836	5	DIAPH3	13	60584726	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08		60584726	54585152	27	23079											
RALGAPA1	253959	broad.mit.edu;hgsc.bcm.edu	37	14	36133906	36133906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	G	36133906	A	G	36133906	3	3	400	1	0	0	0	0	1	0	0	0	13026	188	7	3	2571	3	RALGAPA1	14	36133906	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08		36133906	71215634	28	23080											
HAGH	3029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1866929	1866929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	C	1866929	T	C	1866929	3	2	400	1	0	0	0	0	1	0	0	0	6952	1812	63	3	226	3	HAGH	16	1866929	Missense_Mutation	SNP	T	TCGA-BP-5008-01A-01D-1462-08		1866929	88487824	29	23081											
ACSM3	6296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	20796410	20796410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	20796410	G	T	20796410	3	4	400	1	0	0	0	0	1	0	0	0	185	1174	41	4	1150	4	ACSM3	16	20796410	Missense_Mutation	SNP	G	TCGA-BP-5008-01A-01D-1462-08	18929481	20796410	69558343	30	23082											
FAM108A1	81926	broad.mit.edu	37	19	1881411	1881411	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	1881411	T	T	1881411	3	4	400	1	0	0	0	0	1	0	0	0	5395	1232	43	4	950	4	FAM108A1	19	1881411	Missense_Mutation	SNP	G	TCGA-BP-5008-01A-01D-1462-08		1881411	57247572	31	23083											
DAPK3	1613	hgsc.bcm.edu	37	19	3964978	3964984	+	Frame_Shift_Del	DEL	GCAAACT	GCAAACT	-	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	GCAAACT	GCAAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	-	3964984	GCAAACT	-	3964978	7	5	400	1	0	1	0	1	0	0	0	0	4239	1087	38	0	1318	0	DAPK3	19	3964978	Frame_Shift_Del	DEL	GCAAACT	TCGA-BP-5008-01A-01D-1462-08	2083567	3964978	55164005	32	23084											
PRODH2	58510	broad.mit.edu	37	19	36304176	36304176	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	36304176	T	T	36304176	3	4	400	1	0	0	0	0	1	0	0	0	12559	1232	43	4	1646	4	PRODH2	19	36304176	Missense_Mutation	SNP	G	TCGA-BP-5008-01A-01D-1462-08	32339198	36304176	22824807	33	23085											
DHX35	60625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	37632409	37632409	+	Silent	SNP	T	T	A	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	A	37632409	T	A	37632409	2	1	400	1	0	0	0	0	0	0	0	1	4510	1799	63	5		5	DHX35	20	37632409	Silent	SNP	T	TCGA-BP-5008-01A-01D-1462-08		37632409	25393111	34	23086											
CECR2	27443	broad.mit.edu	37	22	18021869	18021869	+	Silent	SNP	C	T	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	18021869	T	T	18021869	2	4	400	1	0	0	0	0	0	0	0	1	3208	842	30	2		2	CECR2	22	18021869	Silent	SNP	C	TCGA-BP-5008-01A-01D-1462-08		18021869	33282697	35	23087											
CELSR1	9620	hgsc.bcm.edu;ucsc.edu	37	22	46930036	46930036	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	-	46930036	T	-	46930036	7	5	400	1	0	1	0	1	0	0	0	0	3223	1725	60	0	6152	0	CELSR1	22	46930036	Frame_Shift_Del	DEL	T	TCGA-BP-5008-01A-01D-1462-08	28908167	46930036	4374530	36	23088											
CLCN5	1184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	49840554	49840554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	G	49840554	A	G	49840554	3	3	400	1	0	0	0	0	1	0	0	0	3468	246	9	3	538	3	CLCN5	23	49840554	Missense_Mutation	SNP	A	TCGA-BP-5008-01A-01D-1462-08		49840554	105430006	37	23089											
KLF8	11279	broad.mit.edu	37	X	56291625	56291625	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5008-01A-01D-1462-08	TCGA-BP-5008-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a945d50e-a61d-46e3-ade6-c295a5ecf54a	d5e54023-831c-486a-9e5a-57dd34c6ebb0	T	56291625	T	T	56291625	3	4	400	1	0	0	0	0	1	0	0	0	8359	1377	48	4	104	4	KLF8	23	56291625	Missense_Mutation	SNP	G	TCGA-BP-5008-01A-01D-1462-08	6451071	56291625	98978935	38	23090											
SLC30A2	7780	broad.mit.edu;hgsc.bcm.edu	37	1	26370857	26370857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	26370857	C	G	26370857	3	3	401	1	0	0	0	0	1	0	0	0	14568	797	28	4	792	4	SLC30A2	1	26370857	Missense_Mutation	SNP	C	TCGA-BP-5009-01A-01D-1462-08		26370857	222879764	1	23091											
JUN	3725	hgsc.bcm.edu	37	1	59248076	59248076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	59248076	G	C	59248076	3	2	401	1	0	0	0	0	1	0	0	0	7976	1328	46	4	332	4	JUN	1	59248076	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08	32877219	59248076	190002545	2	23092											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201030579	201030579	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	201030579	A	T	201030579	3	4	401	1	0	0	0	0	1	0	0	0	2549	449	16	5	2630	5	CACNA1S	1	201030579	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08	141782503	201030579	48220042	3	23093											
NAV1	89796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201687817	201687817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	201687817	C	A	201687817	3	1	401	1	0	0	0	0	1	0	0	0	10190	855	30	4	1170	4	NAV1	1	201687817	Missense_Mutation	SNP	C	TCGA-BP-5009-01A-01D-1462-08	657238	201687817	47562804	4	23094											
LAMB3	3914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	209799337	209799337	+	Silent	SNP	C	C	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	209799337	C	T	209799337	2	4	401	1	0	0	0	0	0	0	0	1	8619	639	23	1		1	LAMB3	1	209799337	Silent	SNP	C	TCGA-BP-5009-01A-01D-1462-08	8111520	209799337	39451284	5	23095											
CDC42BPA	8476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	227216801	227216801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	227216801	A	G	227216801	3	3	401	1	0	0	0	0	1	0	0	0	3074	188	7	3	1307	3	CDC42BPA	1	227216801	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08	17417464	227216801	22033820	6	23096											
AKT3	10000	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	243859016	243859016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	243859016	C	T	243859016	3	4	401	1	0	0	0	0	1	0	0	0	481	922	32	2	1486	2	AKT3	1	243859016	Missense_Mutation	SNP	C	TCGA-BP-5009-01A-01D-1462-08	16642215	243859016	5391605	7	23097											
TPO	7173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1499872	1499872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	1499872	G	A	1499872	3	1	401	1	0	0	0	0	1	0	0	0	16422	1348	47	2	2160	2	TPO	2	1499872	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08		1499872	241699501	8	23098											
SDC1	6382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	20403634	20403634	+	Silent	SNP	C	C	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	20403634	C	T	20403634	2	4	401	1	0	0	0	0	0	0	0	1	13964	912	32	2		2	SDC1	2	20403634	Silent	SNP	C	TCGA-BP-5009-01A-01D-1462-08	18903762	20403634	222795739	9	23099											
GALNT14	79623	hgsc.bcm.edu;ucsc.edu	37	2	31165110	31165110	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	-	31165110	C	-	31165110	7	5	401	1	0	1	0	1	0	0	0	0	6219	842	30	0	798	0	GALNT14	2	31165110	Frame_Shift_Del	DEL	C	TCGA-BP-5009-01A-01D-1462-08	10761476	31165110	212034263	10	23100											
FN1	2335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	216245654	216245654	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	216245654	C	G	216245654	3	3	401	1	0	0	0	0	1	0	0	0	5969	826	29	4	2175	4	FN1	2	216245654	Missense_Mutation	SNP	C	TCGA-BP-5009-01A-01D-1462-08	185080544	216245654	26953719	11	23101											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183763	10183763	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq;PacBio			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	10183763	A	T	10183763	3	4	401	1	0	0	0	0	1	0	0	0	17174	130	5	5	234	5	VHL	3	10183763	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08		10183763	187838667	12	23102											
CELSR3	1951	broad.mit.edu	37	3	48682540	48682540	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	48682540	A	A	48682540	3	1	401	1	0	0	0	0	1	0	0	0	3225	1203	42	2	2082	2	CELSR3	3	48682540	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08	38498777	48682540	149339890	13	23103											
PROS1	5627	broad.mit.edu	37	3	93643109	93643109	+	Splice_Site	SNP	C	A	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	93643109	A	A	93643109	5	1	401	1	0	0	0	0	0	0	1	0	12568	695	24	4	1848	4	PROS1	3	93643109	Splice_Site	SNP	C	TCGA-BP-5009-01A-01D-1462-08	44960569	93643109	104379321	14	23104											
ADD1	118	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	2906737	2906737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	2906737	A	G	2906737	3	3	401	1	0	0	0	0	1	0	0	0	304	275	10	3	1442	3	ADD1	4	2906737	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08		2906737	188247539	15	23105											
SLIT2	9353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	20550708	20550708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	20550708	A	C	20550708	3	2	401	1	0	0	0	0	1	0	0	0	14753	449	16	5	2540	5	SLIT2	4	20550708	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08	17643971	20550708	170603568	16	23106											
PTPN13	5783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87692395	87692395	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	87692395	G	C	87692395	3	2	401	1	0	0	0	0	1	0	0	0	12793	962	34	4	5008	4	PTPN13	4	87692395	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08	67141687	87692395	103461881	17	23107											
ANK2	287	hgsc.bcm.edu;ucsc.edu	37	4	114277376	114277376	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	-	114277376	C	-	114277376	7	5	401	1	0	1	0	1	0	0	0	0	621	738	26	0	7817	0	ANK2	4	114277376	Frame_Shift_Del	DEL	C	TCGA-BP-5009-01A-01D-1462-08	26584981	114277376	76876900	18	23108											
AGA	175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	178352921	178352921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	178352921	A	T	178352921	3	4	401	1	0	0	0	0	1	0	0	0	365	14	1	5	62	5	AGA	4	178352921	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08	64075545	178352921	12801355	19	23109											
TERT	7015	broad.mit.edu;hgsc.bcm.edu	37	5	1294723	1294723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	1294723	G	A	1294723	3	1	401	1	0	0	0	0	1	0	0	0	15776	1087	38	1	3180	1	TERT	5	1294723	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08		1294723	179620537	20	23110											
PKD2L2	27039	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137230170	137230170	+	Silent	SNP	T	T	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	137230170	T	G	137230170	2	3	401	1	0	0	0	0	0	0	0	1	11975	1654	58	5		5	PKD2L2	5	137230170	Silent	SNP	T	TCGA-BP-5009-01A-01D-1462-08	135935447	137230170	43685090	21	23111											
TUBB	203068	broad.mit.edu;hgsc.bcm.edu	37	6	30692126	30692126	+	Silent	SNP	C	C	A	rs146810731	alternate_allele	TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	30692126	C	A	30692126	2	1	401	1	0	0	0	0	0	0	0	1	16764	639	23	4		4	TUBB	6	30692126	Silent	SNP	C	TCGA-BP-5009-01A-01D-1462-08		30692126	140422941	22	23112											
HIVEP2	3097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	143094139	143094139	+	Silent	SNP	T	T	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	143094139	T	A	143094139	2	1	401	1	0	0	0	0	0	0	0	1	7194	1567	55	5		5	HIVEP2	6	143094139	Silent	SNP	T	TCGA-BP-5009-01A-01D-1462-08	112402013	143094139	28020928	23	23113											
DNAH11	8701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	21657267	21657267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	21657267	G	A	21657267	3	1	401	1	0	0	0	0	1	0	0	0	4601	1145	40	1	4231	1	DNAH11	7	21657267	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08		21657267	137481396	24	23114											
NCAPG2	54892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	158472689	158472689	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	158472689	A	C	158472689	3	2	401	1	0	0	0	0	1	0	0	0	10215	217	8	5	2394	5	NCAPG2	7	158472689	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08	136815422	158472689	665974	25	23115											
OR52B4	143496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	4388624	4388624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	4388624	A	G	4388624	3	3	401	1	0	0	0	0	1	0	0	0	11119	333	12	3	46	3	OR52B4	11	4388624	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08		4388624	130617892	26	23116											
SLC17A6	57084	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	22397548	22397548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	22397548	C	G	22397548	3	3	401	1	0	0	0	0	1	0	0	0	14434	564	20	4	1233	4	SLC17A6	11	22397548	Missense_Mutation	SNP	C	TCGA-BP-5009-01A-01D-1462-08	18008924	22397548	112608968	27	23117											
OR5M8	219484	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56258042	56258042	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	56258042	G	A	56258042	4	1	401	1	0	0	0	0	0	1	0	0	11183	1386	48	2	134	2	OR5M8	11	56258042	Nonsense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08	33860494	56258042	78748474	28	23118	279	2									
OR5M8	219484	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56258050	56258050	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	56258050	G	C	56258050	3	2	401	1	0	0	0	0	1	0	0	0	11183	942	33	4	142	4	OR5M8	11	56258050	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08	8	56258050	78748466	29	23119	279	2									
C11orf24	53838	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	68029933	68029933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	68029933	G	A	68029933	3	1	401	1	0	0	0	0	1	0	0	0	1637	1261	44	2	823	2	C11orf24	11	68029933	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08	11771883	68029933	66976583	30	23120											
RPS3	6188	broad.mit.edu;hgsc.bcm.edu	37	11	75113456	75113456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	75113456	C	T	75113456	3	4	401	1	0	0	0	0	1	0	0	0	13656	768	27	1	330	1	RPS3	11	75113456	Missense_Mutation	SNP	C	TCGA-BP-5009-01A-01D-1462-08	7083523	75113456	59893060	31	23121											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92533045	92533045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	92533045	A	G	92533045	3	3	401	1	0	0	0	0	1	0	0	0	5698	188	7	3	6900	3	FAT3	11	92533045	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08	17419589	92533045	42473471	32	23122											
PIWIL4	143689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	94308185	94308185	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	94308185	G	C	94308185	3	2	401	1	0	0	0	0	1	0	0	0	11967	1348	47	4	197	4	PIWIL4	11	94308185	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08	1775140	94308185	40698331	33	23123											
MMP20	9313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	102482517	102482517	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	102482517	T	G	102482517	3	3	401	1	0	0	0	0	1	0	0	0	9666	1606	56	5	991	5	MMP20	11	102482517	Missense_Mutation	SNP	T	TCGA-BP-5009-01A-01D-1462-08	8174332	102482517	32523999	34	23124											
KCNJ8	3764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21918783	21918783	+	Silent	SNP	G	G	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	21918783	G	T	21918783	2	4	401	1	0	0	0	0	0	0	0	1	8063	1306	46	4		4	KCNJ8	12	21918783	Silent	SNP	G	TCGA-BP-5009-01A-01D-1462-08		21918783	111933112	35	23125											
RAN	5901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	131357432	131357432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	131357432	C	T	131357432	3	4	401	1	0	0	0	0	1	0	0	0	13037	826	29	2	94	2	RAN	12	131357432	Missense_Mutation	SNP	C	TCGA-BP-5009-01A-01D-1462-08	109438649	131357432	2494463	36	23126											
C14orf135	0	hgsc.bcm.edu	37	14	60592395	60592396	+	In_Frame_Ins	INS	-	-	TAT	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	TAT	60592396	-	TAT	60592395	7	5	401	1	0	1	1	0	0	0	0	0	1747	855	30	0	2449	0	C14orf135	14	60592395	In_Frame_Ins	INS	-	TCGA-BP-5009-01A-01D-1462-08		60592395	46757145	37	23127											
CSK	1445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75092775	75092775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	75092775	G	A	75092775	3	1	401	1	0	0	0	0	1	0	0	0	3945	1174	41	2	503	2	CSK	15	75092775	Missense_Mutation	SNP	G	TCGA-BP-5009-01A-01D-1462-08		75092775	27438617	38	23128											
PRSS36	146547	broad.mit.edu;hgsc.bcm.edu	37	16	31160816	31160816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	31160816	A	G	31160816	3	3	401	1	0	0	0	0	1	0	0	0	12635	304	11	3	2542	3	PRSS36	16	31160816	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08		31160816	59193937	39	23129											
WDR81	124997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1633775	1633775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	1633775	T	C	1633775	3	2	401	1	0	0	0	0	1	0	0	0	17342	1754	61	3	3837	3	WDR81	17	1633775	Missense_Mutation	SNP	T	TCGA-BP-5009-01A-01D-1462-08		1633775	79561435	40	23130											
DNAH2	146754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7680805	7680805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	7680805	C	A	7680805	3	1	401	1	0	0	0	0	1	0	0	0	4604	564	20	4	5226	4	DNAH2	17	7680805	Missense_Mutation	SNP	C	TCGA-BP-5009-01A-01D-1462-08	6047030	7680805	73514405	41	23131											
JUP	3728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39927930	39927930	+	Silent	SNP	G	G	A	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	A	39927930	G	A	39927930	2	1	401	1	0	0	0	0	0	0	0	1	7979	1335	47	2		2	JUP	17	39927930	Silent	SNP	G	TCGA-BP-5009-01A-01D-1462-08	32247125	39927930	41267280	42	23132											
SLC4A1	6521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42338113	42338113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	T	42338113	C	T	42338113	3	4	401	1	0	0	0	0	1	0	0	0	14663	768	27	1	2560	1	SLC4A1	17	42338113	Missense_Mutation	SNP	C	TCGA-BP-5009-01A-01D-1462-08	2410183	42338113	38857097	43	23133											
CALCOCO2	10241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	46928942	46928944	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	-	46928944	GAT	-	46928942	7	5	401	1	0	1	0	1	0	0	0	0	2580	933	33	0	676	0	CALCOCO2	17	46928942	In_Frame_Del	DEL	GAT	TCGA-BP-5009-01A-01D-1462-08	4590829	46928942	34266268	44	23134											
ECSIT	51295	hgsc.bcm.edu	37	19	11618629	11618630	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	G	11618630	-	G	11618629	7	5	401	1	0	1	1	0	0	0	0	0	4902	768	27	0	474	0	ECSIT	19	11618629	Frame_Shift_Ins	INS	-	TCGA-BP-5009-01A-01D-1462-08		11618629	47510354	45	23135											
ZNF564	163050	hgsc.bcm.edu;ucsc.edu	37	19	12637642	12637643	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	CA	12637643	-	CA	12637642	7	5	401	1	0	1	1	0	0	0	0	0	18007	623	22	0	385	0	ZNF564	19	12637642	Frame_Shift_Ins	INS	-	TCGA-BP-5009-01A-01D-1462-08	1019013	12637642	46491341	46	23136											
EML2	24139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46136177	46136177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	46136177	T	C	46136177	3	2	401	1	0	0	0	0	1	0	0	0	5099	1696	59	3	1553	3	EML2	19	46136177	Missense_Mutation	SNP	T	TCGA-BP-5009-01A-01D-1462-08	33498535	46136177	12992806	47	23137											
PEG3	5178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57327329	57327329	+	Silent	SNP	T	T	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	57327329	T	C	57327329	2	2	401	1	0	0	0	0	0	0	0	1	11727	1770	62	3		3	PEG3	19	57327329	Silent	SNP	T	TCGA-BP-5009-01A-01D-1462-08	11191152	57327329	1801654	48	23138											
CHM	1121	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	85213896	85213896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5009-01A-01D-1462-08	TCGA-BP-5009-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3baa3cdc-c63e-4556-baf1-c3b03175b0fa	898e7605-5dd0-48b9-9fbc-0fc073d4a49c	C	85213896	A	C	85213896	3	2	401	1	0	0	0	0	1	0	0	0	3352	242	9	5	1212	5	CHM	23	85213896	Missense_Mutation	SNP	A	TCGA-BP-5009-01A-01D-1462-08		85213896	70056664	49	23139											
CLSTN1	22883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	9801267	9801267	+	Silent	SNP	C	C	T	rs149205224		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	9801267	C	T	9801267	2	4	402	1	0	0	0	0	0	0	0	1	3563	871	31	1		1	CLSTN1	1	9801267	Silent	SNP	C	TCGA-BP-5010-01A-02D-1421-08		9801267	239449354	1	23140											
EIF4G3	8672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	21221941	21221941	+	Silent	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	21221941	G	A	21221941	2	1	402	1	0	0	0	0	0	0	0	1	5040	933	33	2		2	EIF4G3	1	21221941	Silent	SNP	G	TCGA-BP-5010-01A-02D-1421-08	11420674	21221941	228028680	2	23141											
ZSCAN20	7579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33956856	33956856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	33956856	C	A	33956856	3	1	402	1	0	0	0	0	1	0	0	0	18244	565	20	4	1016	4	ZSCAN20	1	33956856	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	12734915	33956856	215293765	3	23142											
DENND2C	163259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	115144173	115144173	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	C	115144173	A	C	115144173	3	2	402	1	0	0	0	0	1	0	0	0	4432	449	16	5	1051	5	DENND2C	1	115144173	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08	81187317	115144173	134106448	4	23143											
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	144912241	144912241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	144912241	C	A	144912241	3	1	402	1	0	0	0	0	1	0	0	0	11650	680	24	4	5136	4	PDE4DIP	1	144912241	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	29768068	144912241	104338380	5	23144											
OAZ3	51686	broad.mit.edu;hgsc.bcm.edu	37	1	151740624	151740624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	G	151740624	T	G	151740624	3	3	402	1	0	0	0	0	1	0	0	0	10813	1551	54	5	441	5	OAZ3	1	151740624	Missense_Mutation	SNP	T	TCGA-BP-5010-01A-02D-1421-08	6828383	151740624	97509997	6	23145											
MEF2D	4209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156446973	156446973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	156446973	C	T	156446973	3	4	402	1	0	0	0	0	1	0	0	0	9465	652	23	1	903	1	MEF2D	1	156446973	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	4706349	156446973	92803648	7	23146											
SIPA1L2	57568	broad.mit.edu;hgsc.bcm.edu	37	1	232651061	232651061	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	232651061	C	A	232651061	4	1	402	1	0	0	0	0	0	1	0	0	14343	922	32	4	5227	4	SIPA1L2	1	232651061	Nonsense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	76204088	232651061	16599560	8	23147											
PFN4	375189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24338472	24338472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	24338472	A	T	24338472	3	4	402	1	0	0	0	0	1	0	0	0	11777	420	15	5	22	5	PFN4	2	24338472	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08		24338472	218860901	9	23148											
XPO1	7514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61706022	61706022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	C	61706022	T	C	61706022	3	2	402	1	0	0	0	0	1	0	0	0	17457	1464	51	3	70	3	XPO1	2	61706022	Missense_Mutation	SNP	T	TCGA-BP-5010-01A-02D-1421-08	37367550	61706022	181493351	10	23149											
CNOT10	25904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	32750281	32750281	+	Silent	SNP	T	T	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	32750281	T	A	32750281	2	1	402	1	0	0	0	0	0	0	0	1	3620	1683	59	5		5	CNOT10	3	32750281	Silent	SNP	T	TCGA-BP-5010-01A-02D-1421-08		32750281	165272149	11	23150											
SCN10A	6336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38798548	38798548	+	Silent	SNP	G	G	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	38798548	G	T	38798548	2	4	402	1	0	0	0	0	0	0	0	1	13925	1190	42	4		4	SCN10A	3	38798548	Silent	SNP	G	TCGA-BP-5010-01A-02D-1421-08	6048267	38798548	159223882	12	23151											
TWF2	11344	broad.mit.edu;ucsc.edu	37	3	52273016	52273016	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	52273016	T	T	52273016	3	4	402	1	0	0	0	0	1	0	0	0	16794	739	26	2	1068	2	TWF2	3	52273016	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	13474468	52273016	145749414	13	23152											
CCDC80	151887	hgsc.bcm.edu;ucsc.edu	37	3	112357355	112357356	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	112357356	-	T	112357355	7	5	402	1	0	1	1	0	0	0	0	0	2856	1252	44	0	1482	0	CCDC80	3	112357355	Frame_Shift_Ins	INS	-	TCGA-BP-5010-01A-02D-1421-08	60084339	112357355	85665075	14	23153											
KLF3	51274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	38698861	38698861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	G	38698861	A	G	38698861	3	3	402	1	0	0	0	0	1	0	0	0	8354	411	15	3	1033	3	KLF3	4	38698861	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08		38698861	152455415	15	23154											
KDR	3791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	55955623	55955623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	55955623	C	A	55955623	3	1	402	1	0	0	0	0	1	0	0	0	8146	594	21	4	772	4	KDR	4	55955623	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	17256762	55955623	135198653	16	23155											
CD180	4064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66481767	66481767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	C	66481767	A	C	66481767	3	2	402	1	0	0	0	0	1	0	0	0	2974	101	4	5	1824	5	CD180	5	66481767	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08		66481767	114433493	17	23156											
RAD17	5884	hgsc.bcm.edu;ucsc.edu	37	5	68682089	68682090	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	-	68682090	TT	-	68682089	7	5	402	1	0	1	0	1	0	0	0	0	12992	1725	60	0	853	0	RAD17	5	68682089	Frame_Shift_Del	DEL	TT	TCGA-BP-5010-01A-02D-1421-08	2200322	68682089	112233171	18	23157											
RASGRF2	5924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	80511696	80511696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	80511696	C	A	80511696	3	1	402	1	0	0	0	0	1	0	0	0	13086	492	17	4	3450	4	RASGRF2	5	80511696	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	11829607	80511696	100403564	19	23158											
PCDHB11	56125	hgsc.bcm.edu;ucsc.edu	37	5	140580451	140580453	+	In_Frame_Del	DEL	TAG	TAG	-	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	TAG	TAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	-	140580453	TAG	-	140580451	7	5	402	1	0	1	0	1	0	0	0	0	11543	1751	61	0	1106	0	PCDHB11	5	140580451	In_Frame_Del	DEL	TAG	TCGA-BP-5010-01A-02D-1421-08	60068755	140580451	40334809	20	23159											
CAGE1	285782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7373333	7373333	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	7373333	C	T	7373333	2	4	402	1	0	0	0	0	0	0	0	1	2574	680	24	2		2	CAGE1	6	7373333	Silent	SNP	C	TCGA-BP-5010-01A-02D-1421-08		7373333	163741734	21	23160											
GPLD1	2822	hgsc.bcm.edu;ucsc.edu	37	6	24473886	24473886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	24473886	G	A	24473886	3	1	402	1	0	0	0	0	1	0	0	0	6621	1290	45	2	2192	2	GPLD1	6	24473886	Missense_Mutation	SNP	G	TCGA-BP-5010-01A-02D-1421-08	17100553	24473886	146641181	22	23161											
TTBK1	84630	broad.mit.edu;hgsc.bcm.edu	37	6	43252048	43252048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	43252048	C	A	43252048	3	1	402	1	0	0	0	0	1	0	0	0	16688	709	25	4	3620	4	TTBK1	6	43252048	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	18778162	43252048	127863019	23	23162											
CYP39A1	51302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46563727	46563727	+	Silent	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	46563727	A	T	46563727	2	4	402	1	0	0	0	0	0	0	0	1	4179	10	1	5		5	CYP39A1	6	46563727	Silent	SNP	A	TCGA-BP-5010-01A-02D-1421-08	3311679	46563727	124551340	24	23163											
C6orf138	0	broad.mit.edu;ucsc.edu	37	6	48035980	48035980	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	48035980	A	A	48035980	3	1	402	1	0	0	0	0	1	0	0	0	2334	536	19	4	2140	4	C6orf138	6	48035980	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	1472253	48035980	123079087	25	23164											
KLHL31	401265	broad.mit.edu;hgsc.bcm.edu	37	6	53520057	53520057	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	53520057	T	A	53520057	3	1	402	1	0	0	0	0	1	0	0	0	8392	1609	56	5	1898	5	KLHL31	6	53520057	Missense_Mutation	SNP	T	TCGA-BP-5010-01A-02D-1421-08	5484077	53520057	117595010	26	23165											
COX7A2	1347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	75947673	75947673	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	75947673	C	T	75947673	2	4	402	1	0	0	0	0	0	0	0	1	3782	581	21	2		2	COX7A2	6	75947673	Silent	SNP	C	TCGA-BP-5010-01A-02D-1421-08	22427616	75947673	95167394	27	23166											
MICAL1	64780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	109774523	109774523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	G	109774523	C	G	109774523	3	3	402	1	0	0	0	0	1	0	0	0	9576	623	22	4	2777	4	MICAL1	6	109774523	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	33826850	109774523	61340544	28	23167											
RFX6	222546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	117241586	117241586	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	117241586	C	T	117241586	2	4	402	1	0	0	0	0	0	0	0	1	13280	709	25	2		2	RFX6	6	117241586	Silent	SNP	C	TCGA-BP-5010-01A-02D-1421-08	7467063	117241586	53873481	29	23168											
MAS1	4142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160328147	160328147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	160328147	C	A	160328147	3	1	402	1	0	0	0	0	1	0	0	0	9327	681	24	4	162	4	MAS1	6	160328147	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	43086561	160328147	10786920	30	23169											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu	37	7	48634311	48634311	+	Silent	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	48634311	G	A	48634311	2	1	402	1	0	0	0	0	0	0	0	1	31	962	34	2		2	ABCA13	7	48634311	Silent	SNP	G	TCGA-BP-5010-01A-02D-1421-08		48634311	110504352	31	23170											
FBXL13	222235	hgsc.bcm.edu;ucsc.edu	37	7	102517966	102517966	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	-	102517966	T	-	102517966	7	5	402	1	0	1	0	1	0	0	0	0	5716	1725	60	0	644	0	FBXL13	7	102517966	Frame_Shift_Del	DEL	T	TCGA-BP-5010-01A-02D-1421-08	53883655	102517966	56620697	32	23171											
NUP205	23165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	135298932	135298932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	135298932	C	T	135298932	3	4	402	1	0	0	0	0	1	0	0	0	10766	913	32	2	3311	2	NUP205	7	135298932	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	32780966	135298932	23839731	33	23172											
CDCA2	157313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	25327412	25327412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	G	25327412	A	G	25327412	3	3	402	1	0	0	0	0	1	0	0	0	3088	347	12	3	758	3	CDCA2	8	25327412	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08		25327412	121036610	34	23173											
PCMTD1	115294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	52746175	52746175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	52746175	C	T	52746175	3	4	402	1	0	0	0	0	1	0	0	0	11593	884	31	1	600	1	PCMTD1	8	52746175	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	27418763	52746175	93617847	35	23174											
CREB3	10488	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35736114	35736114	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	35736114	C	T	35736114	2	4	402	1	0	0	0	0	0	0	0	1	3857	709	25	2		2	CREB3	9	35736114	Silent	SNP	C	TCGA-BP-5010-01A-02D-1421-08		35736114	105477317	36	23175											
INVS	27130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	103002449	103002449	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	103002449	C	T	103002449	2	4	402	1	0	0	0	0	0	0	0	1	7794	668	24	2		2	INVS	9	103002449	Silent	SNP	C	TCGA-BP-5010-01A-02D-1421-08	67266335	103002449	38210982	37	23176											
PTEN	5728	hgsc.bcm.edu	37	10	89711969	89711970	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	C	89711970	-	C	89711969	7	5	402	1	0	1	1	0	0	0	0	0	12748	159	6	0	609	0	PTEN	10	89711969	Frame_Shift_Ins	INS	-	TCGA-BP-5010-01A-02D-1421-08		89711969	45822778	38	23177											
OR9G1	390174	hgsc.bcm.edu	37	11	56468235	56468235	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	56468235	C	T	56468235	2	4	402	1	0	0	0	0	0	0	0	1	11257	581	21	2		2	OR9G1	11	56468235	Silent	SNP	C	TCGA-BP-5010-01A-02D-1421-08		56468235	78538281	39	23178											
BBS1	582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66291217	66291217	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	C	66291217	A	C	66291217	3	2	402	1	0	0	0	0	1	0	0	0	1335	188	7	5	1016	5	BBS1	11	66291217	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08	9822982	66291217	68715299	40	23179											
PAH	5053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	103306603	103306603	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	103306603	A	T	103306603	3	4	402	1	0	0	0	0	1	0	0	0	11401	43	2	5	1272	5	PAH	12	103306603	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08		103306603	30545292	41	23180											
TMEM132D	121256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	130184668	130184668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	130184668	G	T	130184668	3	4	402	1	0	0	0	0	1	0	0	0	16059	1203	42	4	2676	4	TMEM132D	12	130184668	Missense_Mutation	SNP	G	TCGA-BP-5010-01A-02D-1421-08	26878065	130184668	3667227	42	23181											
RBM26	64062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	79911406	79911406	+	Missense_Mutation	SNP	C	C	G	rs140188767	alternate_allele	TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	G	79911406	C	G	79911406	3	3	402	1	0	0	0	0	1	0	0	0	13139	652	23	4	475	4	RBM26	13	79911406	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08		79911406	35258472	43	23182											
STRN3	29966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	31404443	31404443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	31404443	A	T	31404443	3	4	402	1	0	0	0	0	1	0	0	0	15342	14	1	5	1527	5	STRN3	14	31404443	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08		31404443	75945097	44	23183											
TTLL5	23093	hgsc.bcm.edu;ucsc.edu	37	14	76349240	76349240	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	-	76349240	T	-	76349240	7	5	402	1	0	1	0	1	0	0	0	0	16742	1596	56	0	3849	0	TTLL5	14	76349240	Frame_Shift_Del	DEL	T	TCGA-BP-5010-01A-02D-1421-08	44944797	76349240	31000300	45	23184											
AQR	9716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	35196663	35196663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	35196663	A	T	35196663	3	4	402	1	0	0	0	0	1	0	0	0	835	359	13	5	2650	5	AQR	15	35196663	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08		35196663	67334729	46	23185											
SPG11	80208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	44877930	44877930	+	Silent	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	44877930	A	T	44877930	2	4	402	1	0	0	0	0	0	0	0	1	15053	407	15	5		5	SPG11	15	44877930	Silent	SNP	A	TCGA-BP-5010-01A-02D-1421-08	9681267	44877930	57653462	47	23186											
CYP1A2	1544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75042328	75042328	+	Silent	SNP	G	G	A	rs17861153	bycluster;byfrequency	TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	75042328	G	A	75042328	2	1	402	1	0	0	0	0	0	0	0	1	4152	1074	38	1		1	CYP1A2	15	75042328	Silent	SNP	G	TCGA-BP-5010-01A-02D-1421-08	30164398	75042328	27489064	48	23187											
SNX33	257364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75942230	75942230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	75942230	G	A	75942230	3	1	402	1	0	0	0	0	1	0	0	0	14916	1145	40	1	789	1	SNX33	15	75942230	Missense_Mutation	SNP	G	TCGA-BP-5010-01A-02D-1421-08	899902	75942230	26589162	49	23188											
TARSL2	123283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	102261432	102261432	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	102261432	T	A	102261432	4	1	402	1	0	0	0	0	0	1	0	0	15573	1850	64	5	2013	5	TARSL2	15	102261432	Nonsense_Mutation	SNP	T	TCGA-BP-5010-01A-02D-1421-08	26319202	102261432	269960	50	23189											
CACNA1H	8912	broad.mit.edu	37	16	1257814	1257814	+	Silent	SNP	C	T	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	1257814	T	T	1257814	2	4	402	1	0	0	0	0	0	0	0	1	2547	842	30	2		2	CACNA1H	16	1257814	Silent	SNP	C	TCGA-BP-5010-01A-02D-1421-08		1257814	89096939	51	23190											
PDILT	204474	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	20380853	20380853	+	Silent	SNP	G	G	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	20380853	G	T	20380853	2	4	402	1	0	0	0	0	0	0	0	1	11681	1277	45	4		4	PDILT	16	20380853	Silent	SNP	G	TCGA-BP-5010-01A-02D-1421-08	19123039	20380853	69973900	52	23191											
SCNN1G	6340	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	23203706	23203706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	G	23203706	A	G	23203706	3	3	402	1	0	0	0	0	1	0	0	0	13943	159	6	3	662	3	SCNN1G	16	23203706	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08	2822853	23203706	67151047	53	23192											
CPNE7	27132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	89657544	89657544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	89657544	G	A	89657544	3	1	402	1	0	0	0	0	1	0	0	0	3819	1203	42	2	1461	2	CPNE7	16	89657544	Missense_Mutation	SNP	G	TCGA-BP-5010-01A-02D-1421-08	66453838	89657544	697209	54	23193											
CD300LG	146894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41926061	41926061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	41926061	G	A	41926061	3	1	402	1	0	0	0	0	1	0	0	0	3004	1087	38	1	185	1	CD300LG	17	41926061	Missense_Mutation	SNP	G	TCGA-BP-5010-01A-02D-1421-08		41926061	39269149	55	23194											
HNRNPM	4670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8528506	8528506	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	8528506	T	A	8528506	3	1	402	1	0	0	0	0	1	0	0	0	7278	1464	51	5	392	5	HNRNPM	19	8528506	Missense_Mutation	SNP	T	TCGA-BP-5010-01A-02D-1421-08		8528506	50600477	56	23195											
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu	37	19	31768802	31768802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	31768802	C	A	31768802	3	1	402	1	0	0	0	0	1	0	0	0	16637	594	21	4	1352	4	TSHZ3	19	31768802	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	23240296	31768802	27360181	57	23196											
RUVBL2	10856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49517740	49517740	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	49517740	G	A	49517740	5	1	402	1	0	0	0	0	0	0	1	0	13766	956	33	2	1047	2	RUVBL2	19	49517740	Splice_Site	SNP	G	TCGA-BP-5010-01A-02D-1421-08	17748938	49517740	9611243	58	23197											
ZNF415	55786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53612726	53612726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	C	53612726	T	C	53612726	3	2	402	1	0	0	0	0	1	0	0	0	17904	1493	52	3	1099	3	ZNF415	19	53612726	Missense_Mutation	SNP	T	TCGA-BP-5010-01A-02D-1421-08	4094986	53612726	5516257	59	23198											
SALL4	57167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	50406800	50406800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	G	50406800	A	G	50406800	3	3	402	1	0	0	0	0	1	0	0	0	13826	14	1	3	951	3	SALL4	20	50406800	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08		50406800	12618720	60	23199											
N6AMT1	29104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	30255320	30255320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	T	30255320	G	T	30255320	3	4	402	1	0	0	0	0	1	0	0	0	10121	1299	45	4	456	4	N6AMT1	21	30255320	Missense_Mutation	SNP	G	TCGA-BP-5010-01A-02D-1421-08		30255320	17874575	61	23200											
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	41450747	41450747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	41450747	C	A	41450747	3	1	402	1	0	0	0	0	1	0	0	0	4770	854	30	4	1492	4	DSCAM	21	41450747	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	11195427	41450747	6679148	62	23201											
MYO18B	84700	broad.mit.edu;hgsc.bcm.edu	37	22	26422488	26422488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	G	26422488	A	G	26422488	3	3	402	1	0	0	0	0	1	0	0	0	10073	159	6	3	6714	3	MYO18B	22	26422488	Missense_Mutation	SNP	A	TCGA-BP-5010-01A-02D-1421-08		26422488	24882078	63	23202											
C22orf9	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45607978	45607978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	G	45607978	C	G	45607978	3	3	402	1	0	0	0	0	1	0	0	0	2153	680	24	4	1175	4	C22orf9	22	45607978	Missense_Mutation	SNP	C	TCGA-BP-5010-01A-02D-1421-08	19185490	45607978	5696588	64	23203											
ZFX	7543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	24197791	24197791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	24197791	G	A	24197791	3	1	402	1	0	0	0	0	1	0	0	0	17673	942	33	2	556	2	ZFX	23	24197791	Missense_Mutation	SNP	G	TCGA-BP-5010-01A-02D-1421-08		24197791	131072769	65	23204											
STAG2	10735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	123179198	123179198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	A	123179198	G	A	123179198	3	1	402	1	0	0	0	0	1	0	0	0	15255	1058	37	1	669	1	STAG2	23	123179198	Missense_Mutation	SNP	G	TCGA-BP-5010-01A-02D-1421-08	98981407	123179198	32091362	66	23205											
C1orf128	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24106410	24106410	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	24106410	C	G	24106410	4	3	403	1	0	0	0	0	0	1	0	0	1997	838	29	4	309	4	C1orf128	1	24106410	Nonsense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08		24106410	225144211	1	23206											
BSDC1	55108	hgsc.bcm.edu;ucsc.edu	37	1	32842305	32842306	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	32842306	CT	-	32842305	7	5	403	1	0	1	0	1	0	0	0	0	1530	680	24	0	590	0	BSDC1	1	32842305	Frame_Shift_Del	DEL	CT	TCGA-BP-5168-01A-01D-1421-08	8735895	32842305	216408316	2	23207											
MYCBP	26292	broad.mit.edu	37	1	39338699	39338700	+	Frame_Shift_Del	DEL	GC	-	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	39338700	-	-	39338699	7	5	403	1	0	1	0	1	0	0	0	0	10024	962	34	0	248	0	MYCBP	1	39338699	Frame_Shift_Del	DEL	GC	TCGA-BP-5168-01A-01D-1421-08	6496394	39338699	209911922	3	23208											
LRRC8B	23507	broad.mit.edu;ucsc.edu	37	1	90048980	90048980	+	Silent	SNP	A	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	90048980	G	G	90048980	2	3	403	1	0	0	0	0	0	0	0	1	9029	436	16	3		3	LRRC8B	1	90048980	Silent	SNP	A	TCGA-BP-5168-01A-01D-1421-08	50710281	90048980	159201641	4	23209											
CCDC76	0	hgsc.bcm.edu;ucsc.edu	37	1	100613814	100613814	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	100613814	T	-	100613814	7	5	403	1	0	1	0	1	0	0	0	0	2852	1461	51	0	1220	0	CCDC76	1	100613814	Frame_Shift_Del	DEL	T	TCGA-BP-5168-01A-01D-1421-08	10564834	100613814	148636807	5	23210											
CACYBP	27101	hgsc.bcm.edu;ucsc.edu	37	1	174977836	174977836	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	174977836	A	-	174977836	7	5	403	1	0	1	0	1	0	0	0	0	2566	246	9	0	542	0	CACYBP	1	174977836	Frame_Shift_Del	DEL	A	TCGA-BP-5168-01A-01D-1421-08	74364022	174977836	74272785	6	23211											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186151399	186151399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	186151399	A	T	186151399	3	4	403	1	0	0	0	0	1	0	0	0	7227	159	6	5	16812	5	HMCN1	1	186151399	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	11173563	186151399	63099222	7	23212											
CHI3L1	1116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203155750	203155750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	203155750	A	G	203155750	3	3	403	1	0	0	0	0	1	0	0	0	3342	217	8	3	1189	3	CHI3L1	1	203155750	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	17004351	203155750	46094871	8	23213											
TAF1A	9015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	222750908	222750908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	222750908	C	G	222750908	3	3	403	1	0	0	0	0	1	0	0	0	15531	912	32	4	897	4	TAF1A	1	222750908	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	19595158	222750908	26499713	9	23214											
OBSCN	84033	hgsc.bcm.edu	37	1	228505318	228505318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	228505318	G	T	228505318	3	4	403	1	0	0	0	0	1	0	0	0	10819	1319	46	4	13917	4	OBSCN	1	228505318	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	5754410	228505318	20745303	10	23215											
OBSCN	84033	broad.mit.edu;hgsc.bcm.edu	37	1	228559759	228559759	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	228559759	T	C	228559759	2	2	403	1	0	0	0	0	0	0	0	1	10819	1490	52	3		3	OBSCN	1	228559759	Silent	SNP	T	TCGA-BP-5168-01A-01D-1421-08	54441	228559759	20690862	11	23216											
RRM2	6241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	10269379	10269379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	10269379	C	T	10269379	3	4	403	1	0	0	0	0	1	0	0	0	13695	623	22	2	1254	2	RRM2	2	10269379	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08		10269379	232929994	12	23217											
ITSN2	50618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24535240	24535240	+	Silent	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	24535240	A	G	24535240	2	3	403	1	0	0	0	0	0	0	0	1	7934	11	1	3		3	ITSN2	2	24535240	Silent	SNP	A	TCGA-BP-5168-01A-01D-1421-08	14265861	24535240	218664133	13	23218											
KHK	3795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27320383	27320383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	27320383	T	C	27320383	3	2	403	1	0	0	0	0	1	0	0	0	8156	1435	50	3	587	3	KHK	2	27320383	Missense_Mutation	SNP	T	TCGA-BP-5168-01A-01D-1421-08	2785143	27320383	215878990	14	23219											
ABCG5	64240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44065039	44065039	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	44065039	G	C	44065039	3	2	403	1	0	0	0	0	1	0	0	0	71	1328	46	4	1804	4	ABCG5	2	44065039	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	16744656	44065039	199134334	15	23220											
CNRIP1	25927	broad.mit.edu	37	2	68546472	68546472	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	68546472	A	A	68546472	3	1	403	1	0	0	0	0	1	0	0	0	3635	652	23	4	506	4	CNRIP1	2	68546472	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	24481433	68546472	174652901	16	23221											
NCAPH	23397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	97024901	97024901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	97024901	G	C	97024901	3	2	403	1	0	0	0	0	1	0	0	0	10216	1174	41	4	1365	4	NCAPH	2	97024901	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	28478429	97024901	146174472	17	23222											
FASTKD2	22868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	207639092	207639092	+	Silent	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	207639092	C	A	207639092	2	1	403	1	0	0	0	0	0	0	0	1	5693	813	29	4		4	FASTKD2	2	207639092	Silent	SNP	C	TCGA-BP-5168-01A-01D-1421-08	110614191	207639092	35560281	18	23223											
SLC16A14	151473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	230910577	230910577	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	230910577	A	-	230910577	7	5	403	1	0	1	0	1	0	0	0	0	14420	246	9	0	275	0	SLC16A14	2	230910577	Frame_Shift_Del	DEL	A	TCGA-BP-5168-01A-01D-1421-08	23271485	230910577	12288796	19	23224											
ASB1	51665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	239353054	239353054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	239353054	C	T	239353054	3	4	403	1	0	0	0	0	1	0	0	0	1013	507	18	2	580	2	ASB1	2	239353054	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	8442477	239353054	3846319	20	23225											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52623262	52623262	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	52623262	T	-	52623262	7	5	403	1	0	1	0	1	0	0	0	0	11498	1609	56	0	2163	0	PBRM1	3	52623262	Frame_Shift_Del	DEL	T	TCGA-BP-5168-01A-01D-1421-08		52623262	145399168	21	23226	280	2									
PBRM1	55193	hgsc.bcm.edu	37	3	52623267	52623267	+	Silent	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	52623267	A	G	52623267	2	3	403	1	0	0	0	0	0	0	0	1	11498	175	7	3		3	PBRM1	3	52623267	Silent	SNP	A	TCGA-BP-5168-01A-01D-1421-08	5	52623267	145399163	22	23227	280	2									
CADM2	253559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	85851226	85851226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	85851226	A	G	85851226	3	3	403	1	0	0	0	0	1	0	0	0	2569	246	9	3	168	3	CADM2	3	85851226	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	33227959	85851226	112171204	23	23228											
PVRL3	25945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	110837735	110837735	+	Silent	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	110837735	T	A	110837735	2	1	403	1	0	0	0	0	0	0	0	1	12854	1596	56	5		5	PVRL3	3	110837735	Silent	SNP	T	TCGA-BP-5168-01A-01D-1421-08	24986509	110837735	87184695	24	23229											
GRAMD1C	54762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113627861	113627861	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	113627861	A	-	113627861	7	5	403	1	0	1	0	1	0	0	0	0	6756	117	5	0	880	0	GRAMD1C	3	113627861	Frame_Shift_Del	DEL	A	TCGA-BP-5168-01A-01D-1421-08	2790126	113627861	84394569	25	23230											
DRD3	1814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113858392	113858392	+	Silent	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	113858392	T	A	113858392	2	1	403	1	0	0	0	0	0	0	0	1	4760	1654	58	5		5	DRD3	3	113858392	Silent	SNP	T	TCGA-BP-5168-01A-01D-1421-08	230531	113858392	84164038	26	23231											
LRRIQ4	344657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	169555371	169555371	+	Silent	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	169555371	A	G	169555371	2	3	403	1	0	0	0	0	0	0	0	1	9038	69	3	3		3	LRRIQ4	3	169555371	Silent	SNP	A	TCGA-BP-5168-01A-01D-1421-08	55696979	169555371	28467059	27	23232											
WDR19	57728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	39206807	39206807	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	39206807	T	A	39206807	3	1	403	1	0	0	0	0	1	0	0	0	17291	1841	64	5	667	5	WDR19	4	39206807	Missense_Mutation	SNP	T	TCGA-BP-5168-01A-01D-1421-08		39206807	151947469	28	23233											
TMPRSS11D	9407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	68692994	68692994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	68692994	C	T	68692994	3	4	403	1	0	0	0	0	1	0	0	0	16253	768	27	1	331	1	TMPRSS11D	4	68692994	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	29486187	68692994	122461282	29	23234											
PTPN13	5783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87679432	87679432	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	87679432	G	A	87679432	4	1	403	1	0	0	0	0	0	1	0	0	12793	1183	41	2	3321	2	PTPN13	4	87679432	Nonsense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	18986438	87679432	103474844	30	23235											
NPNT	255743	broad.mit.edu;ucsc.edu	37	4	106861265	106861265	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	106861265	T	T	106861265	3	4	403	1	0	0	0	0	1	0	0	0	10597	1319	46	4	710	4	NPNT	4	106861265	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	19181833	106861265	84293011	31	23236											
OTUD4	54726	hgsc.bcm.edu	37	4	146076739	146076739	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	146076739	A	-	146076739	7	5	403	1	0	1	0	1	0	0	0	0	11321	130	5	0	2606	0	OTUD4	4	146076739	Frame_Shift_Del	DEL	A	TCGA-BP-5168-01A-01D-1421-08	39215474	146076739	45077537	32	23237											
MFAP3L	9848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	170913100	170913100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	170913100	G	T	170913100	3	4	403	1	0	0	0	0	1	0	0	0	9523	1203	42	4	574	4	MFAP3L	4	170913100	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	24836361	170913100	20241176	33	23238											
FYB	2533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	39202847	39202847	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	39202847	T	C	39202847	2	2	403	1	0	0	0	0	0	0	0	1	6131	1838	64	3		3	FYB	5	39202847	Silent	SNP	T	TCGA-BP-5168-01A-01D-1421-08		39202847	141712413	34	23239											
SKIV2L2	23517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	54701366	54701366	+	Silent	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	54701366	T	A	54701366	2	1	403	1	0	0	0	0	0	0	0	1	14373	1596	56	5		5	SKIV2L2	5	54701366	Silent	SNP	T	TCGA-BP-5168-01A-01D-1421-08	15498519	54701366	126213894	35	23240											
TTC37	9652	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	94860289	94860289	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	94860289	C	G	94860289	3	3	403	1	0	0	0	0	1	0	0	0	16717	912	32	4	3474	4	TTC37	5	94860289	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	40158923	94860289	86054971	36	23241											
PCDHB13	56123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140596070	140596070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	140596070	A	G	140596070	3	3	403	1	0	0	0	0	1	0	0	0	11545	43	2	3	2377	3	PCDHB13	5	140596070	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	45735781	140596070	40319190	37	23242											
LARP1	23367	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	154191178	154191185	+	Frame_Shift_Del	DEL	GTCTTGAA	GTCTTGAA	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	GTCTTGAA	GTCTTGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	154191185	GTCTTGAA	-	154191178	7	5	403	1	0	1	0	1	0	0	0	0	8635	1145	40	0	2898	0	LARP1	5	154191178	Frame_Shift_Del	DEL	GTCTTGAA	TCGA-BP-5168-01A-01D-1421-08	13595108	154191178	26724082	38	23243											
MAML1	9794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179193308	179193308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	179193308	A	T	179193308	3	4	403	1	0	0	0	0	1	0	0	0	9212	275	10	5	1303	5	MAML1	5	179193308	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	25002130	179193308	1721952	39	23244											
BMP6	654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7727745	7727745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	7727745	G	T	7727745	3	4	403	1	0	0	0	0	1	0	0	0	1464	971	34	4	559	4	BMP6	6	7727745	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08		7727745	163387322	40	23245											
PPP1R10	5514	broad.mit.edu;hgsc.bcm.edu	37	6	30569885	30569885	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	30569885	G	A	30569885	2	1	403	1	0	0	0	0	0	0	0	1	12362	1219	43	2		2	PPP1R10	6	30569885	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	22842140	30569885	140545182	41	23246											
C6orf58	352999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	127901450	127901450	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	127901450	G	A	127901450	2	1	403	1	0	0	0	0	0	0	0	1	2369	1103	39	1		1	C6orf58	6	127901450	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	97331565	127901450	43213617	42	23247											
VNN2	8875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	133065439	133065439	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	133065439	C	T	133065439	2	4	403	1	0	0	0	0	0	0	0	1	17195	692	24	2		2	VNN2	6	133065439	Silent	SNP	C	TCGA-BP-5168-01A-01D-1421-08	5163989	133065439	38049628	43	23248											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152757208	152757208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	152757208	G	A	152757208	3	1	403	1	0	0	0	0	1	0	0	0	15457	1319	46	2	22744	2	SYNE1	6	152757208	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	19691769	152757208	18357859	44	23249											
RBAK	57786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	5104366	5104366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	5104366	A	G	5104366	3	3	403	1	0	0	0	0	1	0	0	0	13113	247	9	3	1293	3	RBAK	7	5104366	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08		5104366	154034297	45	23250											
DFNA5	1687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	24738852	24738852	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	24738852	T	C	24738852	2	2	403	1	0	0	0	0	0	0	0	1	4456	1393	49	3		3	DFNA5	7	24738852	Silent	SNP	T	TCGA-BP-5168-01A-01D-1421-08	19634486	24738852	134399811	46	23251											
MLXIPL	51085	broad.mit.edu	37	7	73011708	73011708	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	73011708	-	-	73011708	7	5	403	1	0	1	0	1	0	0	0	0	9644	987	35	0	1187	0	MLXIPL	7	73011708	Frame_Shift_Del	DEL	G	TCGA-BP-5168-01A-01D-1421-08	48272856	73011708	86126955	47	23252											
PEX1	5189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92132412	92132414	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	92132414	AAC	-	92132412	7	5	403	1	0	1	0	1	0	0	0	0	11742	1	1	0	1730	0	PEX1	7	92132412	In_Frame_Del	DEL	AAC	TCGA-BP-5168-01A-01D-1421-08	19120704	92132412	67006251	48	23253											
THAP5	168451	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	108205177	108205177	+	Missense_Mutation	SNP	G	G	T	rs192004311	by1000genomes;alternate_allele	TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	108205177	G	T	108205177	3	4	403	1	0	0	0	0	1	0	0	0	15859	1290	45	4	545	4	THAP5	7	108205177	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	16072765	108205177	50933486	49	23254											
CAPZA2	830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	116538867	116538867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	116538867	A	G	116538867	3	3	403	1	0	0	0	0	1	0	0	0	2643	14	1	3	211	3	CAPZA2	7	116538867	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	8333690	116538867	42599796	50	23255											
PTPRN2	5799	broad.mit.edu;hgsc.bcm.edu	37	7	157985188	157985188	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	157985188	C	T	157985188	5	4	403	1	0	0	0	0	0	0	1	0	12821	695	24	2	2743	2	PTPRN2	7	157985188	Splice_Site	SNP	C	TCGA-BP-5168-01A-01D-1421-08	41446321	157985188	1153475	51	23256											
CSMD1	64478	hgsc.bcm.edu;ucsc.edu	37	8	3141831	3141831	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	3141831	C	-	3141831	7	5	403	1	0	1	0	1	0	0	0	0	3946	884	31	0	6886	0	CSMD1	8	3141831	Frame_Shift_Del	DEL	C	TCGA-BP-5168-01A-01D-1421-08		3141831	143222191	52	23257											
PLAT	5327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	42036456	42036456	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	42036456	G	C	42036456	3	2	403	1	0	0	0	0	1	0	0	0	12028	1057	37	4	207	4	PLAT	8	42036456	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	38894625	42036456	104327566	53	23258											
NCOA2	10499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	71050557	71050557	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	71050557	T	C	71050557	2	2	403	1	0	0	0	0	0	0	0	1	10236	1490	52	3		3	NCOA2	8	71050557	Silent	SNP	T	TCGA-BP-5168-01A-01D-1421-08	29014101	71050557	75313465	54	23259											
OTUD6B	51633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	92083453	92083453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	92083453	A	C	92083453	3	2	403	1	0	0	0	0	1	0	0	0	11324	14	1	5	266	5	OTUD6B	8	92083453	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	21032896	92083453	54280569	55	23260											
TMEM67	91147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	94821184	94821184	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	94821184	G	A	94821184	2	1	403	1	0	0	0	0	0	0	0	1	16208	1246	43	2		2	TMEM67	8	94821184	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	2737731	94821184	51542838	56	23261											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu	37	8	113421242	113421242	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	113421242	T	C	113421242	2	2	403	1	0	0	0	0	0	0	0	1	3948	1393	49	3		3	CSMD3	8	113421242	Silent	SNP	T	TCGA-BP-5168-01A-01D-1421-08	18600058	113421242	32942780	57	23262											
COLEC10	10584	broad.mit.edu;hgsc.bcm.edu	37	8	120101991	120101991	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	120101991	G	A	120101991	5	1	403	1	0	0	0	0	0	0	1	0	3712	1275	44	2	227	2	COLEC10	8	120101991	Splice_Site	SNP	G	TCGA-BP-5168-01A-01D-1421-08	6680749	120101991	26262031	58	23263											
FLJ43860	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	142445230	142445230	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	142445230	G	C	142445230	3	2	403	1	0	0	0	0	1	0	0	0	5937	1195	42	4	297	4	FLJ43860	8	142445230	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	22343239	142445230	3918792	59	23264											
TOP1MT	116447	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144411529	144411529	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	144411529	G	A	144411529	2	1	403	1	0	0	0	0	0	0	0	1	16376	1020	36	2		2	TOP1MT	8	144411529	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	1966299	144411529	1952493	60	23265											
SCRIB	23513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144874929	144874929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	144874929	G	A	144874929	3	1	403	1	0	0	0	0	1	0	0	0	13950	1087	38	1	873	1	SCRIB	8	144874929	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	463400	144874929	1489093	61	23266											
ACO1	48	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32425989	32425989	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	32425989	G	C	32425989	3	2	403	1	0	0	0	0	1	0	0	0	146	1000	35	4	1380	4	ACO1	9	32425989	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08		32425989	108787442	62	23267											
C9orf84	158401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	114518734	114518734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	114518734	C	A	114518734	4	1	403	1	0	0	0	0	0	1	0	0	2502	835	29	4	3877	4	C9orf84	9	114518734	Nonsense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	82092745	114518734	26694697	63	23268											
POLE3	54107	broad.mit.edu;hgsc.bcm.edu	37	9	116171064	116171064	+	RNA	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	116171064	C	T	116171064	1	4	403	0	1	0	0	0	0	0	0	0	12205	870	30	2		2	POLE3	9	116171064	RNA	SNP	C	TCGA-BP-5168-01A-01D-1421-08	1652330	116171064	25042367	64	23269											
OR1B1	347169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125391234	125391234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	125391234	G	A	125391234	3	1	403	1	0	0	0	0	1	0	0	0	10958	942	33	2	378	2	OR1B1	9	125391234	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	9220170	125391234	15822197	65	23270											
FPGS	2356	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130575544	130575544	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	130575544	C	G	130575544	3	3	403	1	0	0	0	0	1	0	0	0	6043	506	18	4	1483	4	FPGS	9	130575544	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	5184310	130575544	10637887	66	23271											
LAMC3	10319	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133914405	133914405	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	133914405	G	A	133914405	2	1	403	1	0	0	0	0	0	0	0	1	8623	1161	41	2		2	LAMC3	9	133914405	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	3338861	133914405	7299026	67	23272											
ADAMTS13	11093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136290722	136290722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	136290722	C	T	136290722	3	4	403	1	0	0	0	0	1	0	0	0	258	478	17	2	418	2	ADAMTS13	9	136290722	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	2376317	136290722	4922709	68	23273											
IDI2	91734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	1066837	1066837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	1066837	C	G	1066837	3	3	403	1	0	0	0	0	1	0	0	0	7507	637	22	4	455	4	IDI2	10	1066837	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08		1066837	134467910	69	23274											
TACR2	6865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	71166878	71166878	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	71166878	G	A	71166878	2	1	403	1	0	0	0	0	0	0	0	1	15518	1335	47	2		2	TACR2	10	71166878	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	70100041	71166878	64367869	70	23275											
IDE	3416	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	94297189	94297189	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	94297189	T	A	94297189	3	1	403	1	0	0	0	0	1	0	0	0	7500	1406	49	5	2938	5	IDE	10	94297189	Missense_Mutation	SNP	T	TCGA-BP-5168-01A-01D-1421-08	23130311	94297189	41237558	71	23276											
ZDHHC16	84287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99213291	99213291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	99213291	G	T	99213291	3	4	403	1	0	0	0	0	1	0	0	0	17618	1212	42	4	579	4	ZDHHC16	10	99213291	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	4916102	99213291	36321456	72	23277	281	2									
ZDHHC16	84287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99213292	99213292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	99213292	C	A	99213292	3	1	403	1	0	0	0	0	1	0	0	0	17618	796	28	4	580	4	ZDHHC16	10	99213292	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	1	99213292	36321455	73	23278	281	2									
HPS6	79803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	103827518	103827518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	103827518	G	T	103827518	3	4	403	1	0	0	0	0	1	0	0	0	7350	1174	41	4	2289	4	HPS6	10	103827518	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	4614226	103827518	31707229	74	23279											
EPS8L2	64787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	710481	710481	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	710481	G	C	710481	3	2	403	1	0	0	0	0	1	0	0	0	5198	1145	40	4	170	4	EPS8L2	11	710481	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08		710481	134296035	75	23280											
MUC6	4588	broad.mit.edu;hgsc.bcm.edu	37	11	1017614	1017614	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	1017614	G	A	1017614	2	1	403	1	0	0	0	0	0	0	0	1	9987	1335	47	2		2	MUC6	11	1017614	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	307133	1017614	133988902	76	23281											
OR51A2	401667	broad.mit.edu;hgsc.bcm.edu	37	11	4976107	4976107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	4976107	A	C	4976107	3	2	403	1	0	0	0	0	1	0	0	0	11093	214	8	5	106	5	OR51A2	11	4976107	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	3958493	4976107	130030409	77	23282											
TMEM179B	374395	broad.mit.edu;ucsc.edu	37	11	62557433	62557433	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	62557433	G	G	62557433	3	3	403	1	0	0	0	0	1	0	0	0	16109	159	6	3	592	3	TMEM179B	11	62557433	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	57581326	62557433	72449083	78	23283											
B3GNT6	192134	broad.mit.edu;hgsc.bcm.edu	37	11	76751055	76751055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	76751055	C	T	76751055	3	4	403	1	0	0	0	0	1	0	0	0	1261	681	24	2	462	2	B3GNT6	11	76751055	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	14193622	76751055	58255461	79	23284											
MLL	4297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118352713	118352713	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	118352713	G	A	118352713	2	1	403	1	0	0	0	0	0	0	0	1	9627	1074	38	1		1	MLL	11	118352713	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	41601658	118352713	16653803	80	23285											
OR8G2	26492	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124095984	124095984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	124095984	C	T	124095984	3	4	403	1	0	0	0	0	1	0	0	0	11242	681	24	2	589	2	OR8G2	11	124095984	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	5743271	124095984	10910532	81	23286											
LPCAT3	10162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7086391	7086391	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	7086391	A	T	7086391	3	4	403	1	0	0	0	0	1	0	0	0	8919	72	3	5	86	5	LPCAT3	12	7086391	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08		7086391	126765504	82	23287											
CLEC12A	160364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10132016	10132016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	10132016	T	C	10132016	3	2	403	1	0	0	0	0	1	0	0	0	3499	1522	53	3	282	3	CLEC12A	12	10132016	Missense_Mutation	SNP	T	TCGA-BP-5168-01A-01D-1421-08	3045625	10132016	123719879	83	23288											
CLEC12A	160364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10132045	10132045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	10132045	A	T	10132045	3	4	403	1	0	0	0	0	1	0	0	0	3499	130	5	5	311	5	CLEC12A	12	10132045	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	29	10132045	123719850	84	23289											
ATF7IP	55729	hgsc.bcm.edu;ucsc.edu	37	12	14650805	14650805	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	14650805	A	-	14650805	7	5	403	1	0	1	0	1	0	0	0	0	1087	246	9	0	3665	0	ATF7IP	12	14650805	Frame_Shift_Del	DEL	A	TCGA-BP-5168-01A-01D-1421-08	4518760	14650805	119201090	85	23290											
H3F3C	440093	broad.mit.edu;hgsc.bcm.edu	37	12	31944927	31944927	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	31944927	G	A	31944927	2	1	403	1	0	0	0	0	0	0	0	1	6942	1103	39	1		1	H3F3C	12	31944927	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	17294122	31944927	101906968	86	23291											
LMBR1L	55716	broad.mit.edu	37	12	49496928	49496928	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	49496928	G	G	49496928	3	3	403	1	0	0	0	0	1	0	0	0	8848	420	15	3	936	3	LMBR1L	12	49496928	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	17552001	49496928	84354967	87	23292											
SUOX	6821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56396036	56396036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	56396036	A	G	56396036	3	3	403	1	0	0	0	0	1	0	0	0	15407	179	7	3	33	3	SUOX	12	56396036	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	6899108	56396036	77455859	88	23293											
TRHDE	29953	broad.mit.edu;ucsc.edu	37	12	72956769	72956769	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	72956769	A	A	72956769	3	1	403	1	0	0	0	0	1	0	0	0	16491	1841	64	5	1890	5	TRHDE	12	72956769	Missense_Mutation	SNP	T	TCGA-BP-5168-01A-01D-1421-08	16560733	72956769	60895126	89	23294											
MYBPC1	4604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	102067221	102067221	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	102067221	A	T	102067221	3	4	403	1	0	0	0	0	1	0	0	0	10018	246	9	5	2786	5	MYBPC1	12	102067221	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	29110452	102067221	31784674	90	23295											
ACAD10	80724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	112167663	112167663	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	112167663	G	T	112167663	4	4	403	1	0	0	0	0	0	1	0	0	108	1059	37	4	1428	4	ACAD10	12	112167663	Nonsense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	10100442	112167663	21684232	91	23296											
RPH3A	22895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113285641	113285641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	113285641	G	A	113285641	3	1	403	1	0	0	0	0	1	0	0	0	13564	1058	37	1	234	1	RPH3A	12	113285641	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	1117978	113285641	20566254	92	23297											
CLIP1	6249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	122826194	122826194	+	Silent	SNP	T	T	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	122826194	T	G	122826194	2	3	403	1	0	0	0	0	0	0	0	1	3534	1509	53	5		5	CLIP1	12	122826194	Silent	SNP	T	TCGA-BP-5168-01A-01D-1421-08	9540553	122826194	11025701	93	23298											
FAM101A	144347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124798830	124798830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	124798830	C	T	124798830	3	4	403	1	0	0	0	0	1	0	0	0	5384	507	18	2	173	2	FAM101A	12	124798830	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	1972636	124798830	9053065	94	23299											
SACS	26278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	23909182	23909182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	23909182	G	T	23909182	3	4	403	1	0	0	0	0	1	0	0	0	13817	1386	48	4	4910	4	SACS	13	23909182	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08		23909182	91260696	95	23300											
COL4A1	1282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	110835582	110835582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	110835582	G	A	110835582	3	1	403	1	0	0	0	0	1	0	0	0	3691	1232	43	2	3174	2	COL4A1	13	110835582	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	86926400	110835582	4334296	96	23301											
TUBGCP3	10426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	113242269	113242269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	113242269	G	A	113242269	3	1	403	1	0	0	0	0	1	0	0	0	16779	1116	39	1	2785	1	TUBGCP3	13	113242269	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	2406687	113242269	1927609	97	23302											
RAB2B	84932	broad.mit.edu;hgsc.bcm.edu	37	14	21944786	21944786	+	RNA	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	21944786	C	T	21944786	1	4	403	0	1	0	0	0	0	0	0	0	12931	841	29	2		2	RAB2B	14	21944786	RNA	SNP	C	TCGA-BP-5168-01A-01D-1421-08		21944786	85404754	98	23303											
DHRS4L2	317749	broad.mit.edu;hgsc.bcm.edu	37	14	24459472	24459472	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	24459472	C	T	24459472	2	4	403	1	0	0	0	0	0	0	0	1	4496	506	18	2		2	DHRS4L2	14	24459472	Silent	SNP	C	TCGA-BP-5168-01A-01D-1421-08	2514686	24459472	82890068	99	23304											
RABGGTA	5875	hgsc.bcm.edu;ucsc.edu	37	14	24740082	24740084	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	24740084	CAG	-	24740082	7	5	403	1	0	1	0	1	0	0	0	0	12980	813	29	0	1688	0	RABGGTA	14	24740082	In_Frame_Del	DEL	CAG	TCGA-BP-5168-01A-01D-1421-08	280610	24740082	82609458	100	23305											
NID2	22795	broad.mit.edu;hgsc.bcm.edu	37	14	52534720	52534720	+	Silent	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	52534720	G	C	52534720	2	2	403	1	0	0	0	0	0	0	0	1	10422	1103	39	4		4	NID2	14	52534720	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	27794638	52534720	54814820	101	23306											
PACS2	23241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	105843253	105843253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	105843253	C	G	105843253	3	3	403	1	0	0	0	0	1	0	0	0	11380	652	23	4	984	4	PACS2	14	105843253	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	53308533	105843253	1506287	102	23307											
CCNDBP1	23582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43482264	43482264	+	Silent	SNP	A	A	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	43482264	A	C	43482264	2	2	403	1	0	0	0	0	0	0	0	1	2921	296	11	5		5	CCNDBP1	15	43482264	Silent	SNP	A	TCGA-BP-5168-01A-01D-1421-08		43482264	59049128	103	23308											
MYO5C	55930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52521378	52521378	+	Silent	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	52521378	A	T	52521378	2	4	403	1	0	0	0	0	0	0	0	1	10087	59	3	5		5	MYO5C	15	52521378	Silent	SNP	A	TCGA-BP-5168-01A-01D-1421-08	9039114	52521378	50010014	104	23309											
LACTB	114294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63419762	63419762	+	Silent	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	63419762	C	A	63419762	2	1	403	1	0	0	0	0	0	0	0	1	8604	643	23	4		4	LACTB	15	63419762	Silent	SNP	C	TCGA-BP-5168-01A-01D-1421-08	10898384	63419762	39111630	105	23310											
ABCC1	4363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	16149977	16149977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	16149977	G	A	16149977	3	1	403	1	0	0	0	0	1	0	0	0	49	1116	39	1	1548	1	ABCC1	16	16149977	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08		16149977	74204776	106	23311											
GTF3C1	2975	hgsc.bcm.edu;ucsc.edu	37	16	27500985	27500986	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	27500986	-	T	27500985	7	5	403	1	0	1	1	0	0	0	0	0	6879	796	28	0	3170	0	GTF3C1	16	27500985	Frame_Shift_Ins	INS	-	TCGA-BP-5168-01A-01D-1421-08	11351008	27500985	62853768	107	23312											
EDC4	23644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67912713	67912713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	67912713	T	C	67912713	3	2	403	1	0	0	0	0	1	0	0	0	4910	1406	49	3	1300	3	EDC4	16	67912713	Missense_Mutation	SNP	T	TCGA-BP-5168-01A-01D-1421-08	40411728	67912713	22442040	108	23313											
WDR81	124997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1634217	1634217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	1634217	A	T	1634217	3	4	403	1	0	0	0	0	1	0	0	0	17342	391	14	5	4016	5	WDR81	17	1634217	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08		1634217	79560993	109	23314											
BLMH	642	hgsc.bcm.edu;ucsc.edu	37	17	28599644	28599655	+	Frame_Shift_Del	DEL	AGCCTAGAAACA	AGCCTAGAAACA	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	AGCCTAGAAACA	AGCCTAGAAACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	28599655	AGCCTAGAAACA	-	28599644	7	5	403	1	0	1	0	1	0	0	0	0	1446	175	7	0	420	0	BLMH	17	28599644	Frame_Shift_Del	DEL	AGCCTAGAAACA	TCGA-BP-5168-01A-01D-1421-08	26965427	28599644	52595566	110	23315											
SUZ12	23512	hgsc.bcm.edu	37	17	30310087	30310088	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	30310088	-	A	30310087	7	5	403	1	0	1	1	0	0	0	0	0	15428	933	33	0	1021	0	SUZ12	17	30310087	Frame_Shift_Ins	INS	-	TCGA-BP-5168-01A-01D-1421-08	1710443	30310087	50885123	111	23316											
MSL1	339287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38285875	38285875	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	38285875	T	A	38285875	3	1	403	1	0	0	0	0	1	0	0	0	9884	1638	57	5	587	5	MSL1	17	38285875	Missense_Mutation	SNP	T	TCGA-BP-5168-01A-01D-1421-08	7975788	38285875	42909335	112	23317											
NXPH3	11248	hgsc.bcm.edu;ucsc.edu	37	17	47656509	47656509	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	47656509	C	-	47656509	7	5	403	1	0	1	0	1	0	0	0	0	10799	506	18	0	612	0	NXPH3	17	47656509	Frame_Shift_Del	DEL	C	TCGA-BP-5168-01A-01D-1421-08	9370634	47656509	33538701	113	23318											
KIAA1543	0	hgsc.bcm.edu	37	19	7675454	7675455	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	7675455	-	G	7675454	7	5	403	1	0	1	1	0	0	0	0	0	8250	1580	55	0	964	0	KIAA1543	19	7675454	Frame_Shift_Ins	INS	-	TCGA-BP-5168-01A-01D-1421-08		7675454	51453529	114	23319											
ZNF561	93134	broad.mit.edu;hgsc.bcm.edu	37	19	9724746	9724746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	9724746	G	A	9724746	3	1	403	1	0	0	0	0	1	0	0	0	18004	1294	45	2	1193	2	ZNF561	19	9724746	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	2049292	9724746	49404237	115	23320											
NFIX	4784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	13192531	13192531	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	13192531	C	T	13192531	2	4	403	1	0	0	0	0	0	0	0	1	10381	668	24	2		2	NFIX	19	13192531	Silent	SNP	C	TCGA-BP-5168-01A-01D-1421-08	3467785	13192531	45936452	116	23321											
MAP1S	55201	broad.mit.edu	37	19	17838751	17838751	+	Missense_Mutation	SNP	C	A	A	rs138807804	alternate_allele	TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	17838751	A	A	17838751	3	1	403	1	0	0	0	0	1	0	0	0	9241	710	25	4	2576	4	MAP1S	19	17838751	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	4646220	17838751	41290232	117	23322											
ZNF492	57615	broad.mit.edu	37	19	22847963	22847963	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	22847963	T	T	22847963	3	4	403	1	0	0	0	0	1	0	0	0	17955	333	12	5	1502	5	ZNF492	19	22847963	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	5009212	22847963	36281020	118	23323											
VRK3	51231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50512604	50512604	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	50512604	G	C	50512604	3	2	403	1	0	0	0	0	1	0	0	0	17233	1174	41	4	1290	4	VRK3	19	50512604	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	27664641	50512604	8616379	119	23324											
ZNF677	342926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53740381	53740381	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	53740381	G	C	53740381	3	2	403	1	0	0	0	0	1	0	0	0	18096	1252	44	4	159	4	ZNF677	19	53740381	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08	3227777	53740381	5388602	120	23325											
ZCCHC3	85364	hgsc.bcm.edu	37	20	278733	278733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	278733	G	A	278733	3	1	403	1	0	0	0	0	1	0	0	0	17601	1087	38	1	508	1	ZCCHC3	20	278733	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08		278733	62746787	121	23326	282	2									
ZCCHC3	85364	hgsc.bcm.edu	37	20	278734	278734	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	278734	C	T	278734	2	4	403	1	0	0	0	0	0	0	0	1	17601	697	25	2		2	ZCCHC3	20	278734	Silent	SNP	C	TCGA-BP-5168-01A-01D-1421-08	1	278734	62746786	122	23327	282	2									
SCRT2	85508	broad.mit.edu	37	20	656174	656174	+	Silent	SNP	G	A	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	656174	A	A	656174	2	1	403	1	0	0	0	0	0	0	0	1	13955	987	35	2		2	SCRT2	20	656174	Silent	SNP	G	TCGA-BP-5168-01A-01D-1421-08	377440	656174	62369346	123	23328											
CPXM1	56265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2775211	2775211	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	2775211	C	T	2775211	2	4	403	1	0	0	0	0	0	0	0	1	3839	581	21	2		2	CPXM1	20	2775211	Silent	SNP	C	TCGA-BP-5168-01A-01D-1421-08	2119037	2775211	60250309	124	23329											
NKX2-2	4821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	21494259	21494259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	21494259	C	G	21494259	3	3	403	1	0	0	0	0	1	0	0	0	10457	913	32	4	780	4	NKX2-2	20	21494259	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	18719048	21494259	41531261	125	23330											
CPNE1	8904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34219486	34219486	+	Silent	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	34219486	A	G	34219486	2	3	403	1	0	0	0	0	0	0	0	1	3813	98	4	3		3	CPNE1	20	34219486	Silent	SNP	A	TCGA-BP-5168-01A-01D-1421-08	12725227	34219486	28806034	126	23331											
GDAP1L1	78997	hgsc.bcm.edu	37	20	42876070	42876070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	G	42876070	C	G	42876070	3	3	403	1	0	0	0	0	1	0	0	0	6315	535	19	4	98	4	GDAP1L1	20	42876070	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	8656584	42876070	20149450	127	23332											
SON	6651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34925507	34925507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	34925507	G	C	34925507	3	2	403	1	0	0	0	0	1	0	0	0	14939	943	33	4	3980	4	SON	21	34925507	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08		34925507	13204388	128	23333											
SETD4	54093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37418054	37418054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	37418054	A	T	37418054	3	4	403	1	0	0	0	0	1	0	0	0	14146	127	5	5	817	5	SETD4	21	37418054	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	2492547	37418054	10711841	129	23334											
MMP11	4320	hgsc.bcm.edu;ucsc.edu	37	22	24121517	24121517	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	-	24121517	C	-	24121517	7	5	403	1	0	1	0	1	0	0	0	0	9657	506	18	0	258	0	MMP11	22	24121517	Frame_Shift_Del	DEL	C	TCGA-BP-5168-01A-01D-1421-08		24121517	27183049	130	23335											
CSF2RA	1438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	1422842	1422842	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	C	1422842	G	C	1422842	3	2	403	1	0	0	0	0	1	0	0	0	3936	1377	48	4	1113	4	CSF2RA	23	1422842	Missense_Mutation	SNP	G	TCGA-BP-5168-01A-01D-1421-08		1422842	153847718	131	23336											
ARHGAP6	395	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	11204520	11204520	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	T	11204520	A	T	11204520	3	4	403	1	0	0	0	0	1	0	0	0	887	72	3	5	1973	5	ARHGAP6	23	11204520	Missense_Mutation	SNP	A	TCGA-BP-5168-01A-01D-1421-08	9781678	11204520	144066040	132	23337											
USP9X	8239	broad.mit.edu;hgsc.bcm.edu	37	X	41088595	41088595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	A	41088595	C	A	41088595	3	1	403	1	0	0	0	0	1	0	0	0	17102	710	25	4	7313	4	USP9X	23	41088595	Missense_Mutation	SNP	C	TCGA-BP-5168-01A-01D-1421-08	29884075	41088595	114181965	133	23338											
KIF1B	23095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10363881	10363881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	10363881	G	T	10363881	3	4	404	1	0	0	0	0	1	0	0	0	8291	1319	46	4	2716	4	KIF1B	1	10363881	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08		10363881	238886740	1	23339											
MTHFR	4524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11855302	11855302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	11855302	C	A	11855302	3	1	404	1	0	0	0	0	1	0	0	0	9938	768	27	4	1114	4	MTHFR	1	11855302	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	1491421	11855302	237395319	2	23340											
HSPG2	3339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22168731	22168731	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	22168731	C	T	22168731	5	4	404	1	0	0	0	0	0	0	1	0	7437	550	19	1	4242	1	HSPG2	1	22168731	Splice_Site	SNP	C	TCGA-BP-5169-01A-01D-1429-08	10313429	22168731	227081890	3	23341											
ZMYM4	9202	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35857906	35857906	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	35857906	G	C	35857906	3	2	404	1	0	0	0	0	1	0	0	0	17714	1029	36	4	2743	4	ZMYM4	1	35857906	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	13689175	35857906	213392715	4	23342											
FCRL5	83416	hgsc.bcm.edu	37	1	157485438	157485438	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	-	157485438	A	-	157485438	7	5	404	1	0	1	0	1	0	0	0	0	5805	261	9	0		0	FCRL5	1	157485438	Frame_Shift_Del	DEL	A	TCGA-BP-5169-01A-01D-1429-08	121627532	157485438	91765183	5	23343											
SELE	6401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169697008	169697008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	169697008	G	A	169697008	3	1	404	1	0	0	0	0	1	0	0	0	14026	1000	35	2	512	2	SELE	1	169697008	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	12211570	169697008	79553613	6	23344											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32689778	32689778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	32689778	G	T	32689778	3	4	404	1	0	0	0	0	1	0	0	0	1438	971	34	4	5241	4	BIRC6	2	32689778	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08		32689778	210509595	7	23345											
SLC9A4	389015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	103120167	103120167	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	103120167	G	A	103120167	5	1	404	1	0	0	0	0	0	0	1	0	14729	1159	40	1	991	1	SLC9A4	2	103120167	Splice_Site	SNP	G	TCGA-BP-5169-01A-01D-1429-08	70430389	103120167	140079206	8	23346											
IWS1	55677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128252517	128252517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	128252517	A	C	128252517	3	2	404	1	0	0	0	0	1	0	0	0	7938	131	5	5	757	5	IWS1	2	128252517	Missense_Mutation	SNP	A	TCGA-BP-5169-01A-01D-1429-08	25132350	128252517	114946856	9	23347											
SLC23A3	151295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220033819	220033819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	220033819	G	A	220033819	3	1	404	1	0	0	0	0	1	0	0	0	14477	1000	35	2	1444	2	SLC23A3	2	220033819	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	91781302	220033819	23165554	10	23348											
PAX3	5077	broad.mit.edu;hgsc.bcm.edu	37	2	223066808	223066808	+	Silent	SNP	C	C	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	223066808	C	A	223066808	2	1	404	1	0	0	0	0	0	0	0	1	11487	465	17	4		4	PAX3	2	223066808	Silent	SNP	C	TCGA-BP-5169-01A-01D-1429-08	3032989	223066808	20132565	11	23349											
HJURP	55355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234749963	234749963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	234749963	G	A	234749963	3	1	404	1	0	0	0	0	1	0	0	0	7196	1000	35	2	791	2	HJURP	2	234749963	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	11683155	234749963	8449410	12	23350											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10188200	10188200	+	Missense_Mutation	SNP	C	T	T	rs5030811	bycluster	TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	10188200	T	T	10188200	3	4	404	1	0	0	0	0	1	0	0	0	17174	826	29	2	349	2	VHL	3	10188200	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08		10188200	187834230	13	23351											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47125380	47125380	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	47125380	C	A	47125380	4	1	404	1	0	0	0	0	0	1	0	0	14144	922	32	4	1844	4	SETD2	3	47125380	Nonsense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	36937180	47125380	150897050	14	23352											
LAMB2	3913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49160288	49160288	+	Silent	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	49160288	G	A	49160288	2	1	404	1	0	0	0	0	0	0	0	1	8618	1277	45	2		2	LAMB2	3	49160288	Silent	SNP	G	TCGA-BP-5169-01A-01D-1429-08	2034908	49160288	148862142	15	23353											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52595787	52595787	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	52595787	A	C	52595787	4	2	404	1	0	0	0	0	0	1	0	0	11498	224	8	5	640	5	PBRM1	3	52595787	Nonsense_Mutation	SNP	A	TCGA-BP-5169-01A-01D-1429-08	3435499	52595787	145426643	16	23354											
ACAD11	84129	broad.mit.edu;hgsc.bcm.edu	37	3	132323956	132323956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	G	132323956	C	G	132323956	3	3	404	1	0	0	0	0	1	0	0	0	109	710	25	4	870	4	ACAD11	3	132323956	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	79728169	132323956	65698474	17	23355											
FBXL21	26223	hgsc.bcm.edu	37	5	135276202	135276204	+	In_Frame_Del	DEL	GTT	GTT	-	rs1160982	bycluster;byfrequency;by1000genomes	TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	-	135276204	GTT	-	135276202	7	5	404	1	0	1	0	1	0	0	0	0	5725	1029	36	0	524	0	FBXL21	5	135276202	In_Frame_Del	DEL	GTT	TCGA-BP-5169-01A-01D-1429-08		135276202	45639058	18	23356											
CLINT1	9685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	157232998	157232998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	157232998	G	T	157232998	3	4	404	1	0	0	0	0	1	0	0	0	3533	1261	44	4	1083	4	CLINT1	5	157232998	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	21956796	157232998	23682262	19	23357											
PRDM13	59336	broad.mit.edu	37	6	100057184	100057184	+	Splice_Site	SNP	G	A	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	100057184	A	A	100057184	5	1	404	1	0	0	0	0	0	0	1	0	12464	1275	44	2	408	2	PRDM13	6	100057184	Splice_Site	SNP	G	TCGA-BP-5169-01A-01D-1429-08		100057184	71057883	20	23358											
AIM1	202	ucsc.edu	37	6	106960877	106960877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	.	WXS	454	.	.	Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	106960877	G	T	106960877	3	4	404	1	0	0	0	0	1	0	0	0	430	1116	39	4	663	4	AIM1	6	106960877	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	6903693	106960877	64154190	21	23359											
TPST1	8460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	65705680	65705680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	65705680	G	T	65705680	3	4	404	1	0	0	0	0	1	0	0	0	16439	1174	41	4	270	4	TPST1	7	65705680	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08		65705680	93432983	22	23360											
ZNF3	7551	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99668973	99668973	+	Silent	SNP	G	G	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	99668973	G	C	99668973	2	2	404	1	0	0	0	0	0	0	0	1	17841	987	35	4		4	ZNF3	7	99668973	Silent	SNP	G	TCGA-BP-5169-01A-01D-1429-08	33963293	99668973	59469690	23	23361											
AGFG2	3268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100160277	100160277	+	Silent	SNP	C	C	T	rs146791629		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	100160277	C	T	100160277	2	4	404	1	0	0	0	0	0	0	0	1	381	755	27	1		1	AGFG2	7	100160277	Silent	SNP	C	TCGA-BP-5169-01A-01D-1429-08	491304	100160277	58978386	24	23362											
SSPO	23145	broad.mit.edu	37	7	149482073	149482073	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	149482073	T	T	149482073	3	4	404	1	0	0	0	0	1	0	0	0	15201	1203	42	4	2935	4	SSPO	7	149482073	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	49321796	149482073	9656590	25	23363											
ZNF572	137209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125989952	125989952	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	G	125989952	C	G	125989952	3	3	404	1	0	0	0	0	1	0	0	0	18016	739	26	4	1448	4	ZNF572	8	125989952	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08		125989952	20374070	26	23364											
CALHM1	255022	hgsc.bcm.edu	37	10	105218252	105218259	+	Frame_Shift_Del	DEL	AGCGGCCG	AGCGGCCG	-	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	AGCGGCCG	AGCGGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	-	105218259	AGCGGCCG	-	105218252	7	5	404	1	0	1	0	1	0	0	0	0	2584	188	7	0	791	0	CALHM1	10	105218252	Frame_Shift_Del	DEL	AGCGGCCG	TCGA-BP-5169-01A-01D-1429-08		105218252	30316495	27	23365											
OR5I1	10798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55703464	55703464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	55703464	A	C	55703464	3	2	404	1	0	0	0	0	1	0	0	0	11171	217	8	5	534	5	OR5I1	11	55703464	Missense_Mutation	SNP	A	TCGA-BP-5169-01A-01D-1429-08		55703464	79303052	28	23366											
OR10W1	81341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	58034733	58034733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	58034733	C	T	58034733	3	4	404	1	0	0	0	0	1	0	0	0	10928	478	17	2	323	2	OR10W1	11	58034733	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	2331269	58034733	76971783	29	23367											
PPFIA1	8500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	70218604	70218604	+	Silent	SNP	T	T	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	70218604	T	C	70218604	2	2	404	1	0	0	0	0	0	0	0	1	12316	1742	61	3		3	PPFIA1	11	70218604	Silent	SNP	T	TCGA-BP-5169-01A-01D-1429-08	12183871	70218604	64787912	30	23368											
CCDC89	220388	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	85396828	85396828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	85396828	C	T	85396828	3	4	404	1	0	0	0	0	1	0	0	0	2868	623	22	2	782	2	CCDC89	11	85396828	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	15178224	85396828	49609688	31	23369											
DDX25	29118	broad.mit.edu	37	11	125786947	125786947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	125786947	T	T	125786947	3	4	404	1	0	0	0	0	1	0	0	0	4354	710	25	2	873	2	DDX25	11	125786947	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	40390119	125786947	9219569	32	23370											
VWF	7450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6219564	6219564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	6219564	C	T	6219564	3	4	404	1	0	0	0	0	1	0	0	0	17258	835	29	2	8125	2	VWF	12	6219564	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08		6219564	127632331	33	23371											
LRRK2	120892	hgsc.bcm.edu;ucsc.edu	37	12	40702937	40702937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	40702937	C	A	40702937	3	1	404	1	0	0	0	0	1	0	0	0	9040	594	21	4	4337	4	LRRK2	12	40702937	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	34483373	40702937	93148958	34	23372											
CDK17	5128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	96683053	96683053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	96683053	G	A	96683053	3	1	404	1	0	0	0	0	1	0	0	0	3135	1203	42	2	627	2	CDK17	12	96683053	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	55980116	96683053	37168842	35	23373											
BCL7A	605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	122492742	122492742	+	Silent	SNP	G	G	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	122492742	G	C	122492742	2	2	404	1	0	0	0	0	0	0	0	1	1378	1045	37	4		4	BCL7A	12	122492742	Silent	SNP	G	TCGA-BP-5169-01A-01D-1429-08	25809689	122492742	11359153	36	23374											
C13orf23	0	hgsc.bcm.edu;ucsc.edu	37	13	39587067	39587067	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	-	39587067	G	-	39587067	7	5	404	1	0	1	0	1	0	0	0	0	1723	933	33	0	524	0	C13orf23	13	39587067	Frame_Shift_Del	DEL	G	TCGA-BP-5169-01A-01D-1429-08		39587067	75582811	37	23375											
HOMEZ	57594	hgsc.bcm.edu	37	14	23745517	23745518	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	G	23745518	-	G	23745517	7	5	404	1	0	1	1	0	0	0	0	0	7288	1580	55	0	736	0	HOMEZ	14	23745517	Frame_Shift_Ins	INS	-	TCGA-BP-5169-01A-01D-1429-08		23745517	83604023	38	23376											
GALK2	2585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49611861	49611861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	49611861	T	C	49611861	3	2	404	1	0	0	0	0	1	0	0	0	6211	1551	54	3	1086	3	GALK2	15	49611861	Missense_Mutation	SNP	T	TCGA-BP-5169-01A-01D-1429-08		49611861	52919531	39	23377											
USP31	57478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	23079995	23079995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	23079995	G	T	23079995	3	4	404	1	0	0	0	0	1	0	0	0	17074	1000	35	4	631	4	USP31	16	23079995	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08		23079995	67274758	40	23378											
ABCC12	94160	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	48173117	48173117	+	Missense_Mutation	SNP	G	G	A	rs141109408	byfrequency;alternate_allele	TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	48173117	G	A	48173117	3	1	404	1	0	0	0	0	1	0	0	0	52	971	34	2	3391	2	ABCC12	16	48173117	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	25093122	48173117	42181636	41	23379											
BCAR1	9564	broad.mit.edu;hgsc.bcm.edu	37	16	75269312	75269312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	75269312	C	A	75269312	3	1	404	1	0	0	0	0	1	0	0	0	1348	796	28	4	1139	4	BCAR1	16	75269312	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	27096195	75269312	15085441	42	23380											
TNK1	8711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7291994	7291994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	7291994	G	T	7291994	3	4	404	1	0	0	0	0	1	0	0	0	16329	1058	37	4	1785	4	TNK1	17	7291994	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08		7291994	73903216	43	23381											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11757612	11757612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	11757612	C	A	11757612	3	1	404	1	0	0	0	0	1	0	0	0	4610	855	30	4	9998	4	DNAH9	17	11757612	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	4465618	11757612	69437598	44	23382											
SDK2	54549	broad.mit.edu;hgsc.bcm.edu	37	17	71344797	71344797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	71344797	G	A	71344797	3	1	404	1	0	0	0	0	1	0	0	0	13982	1000	35	2	420	2	SDK2	17	71344797	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	59587185	71344797	9850413	45	23383											
UBE2O	63893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74392798	74392798	+	Silent	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	74392798	G	A	74392798	2	1	404	1	0	0	0	0	0	0	0	1	16880	962	34	2		2	UBE2O	17	74392798	Silent	SNP	G	TCGA-BP-5169-01A-01D-1429-08	3048001	74392798	6802412	46	23384											
KIAA0802	0	broad.mit.edu	37	18	8786001	8786001	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	T	8786001	T	T	8786001	3	4	404	1	0	0	0	0	1	0	0	0	8201	1087	38	4	1817	4	KIAA0802	18	8786001	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08		8786001	69291247	47	23385											
ALPK2	115701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	56202373	56202373	+	Silent	SNP	T	T	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	56202373	T	C	56202373	2	2	404	1	0	0	0	0	0	0	0	1	545	1838	64	3		3	ALPK2	18	56202373	Silent	SNP	T	TCGA-BP-5169-01A-01D-1429-08	47416372	56202373	21874875	48	23386											
GRIN3B	116444	hgsc.bcm.edu	37	19	1007860	1007861	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	1007861	-	C	1007860	7	5	404	1	0	1	1	0	0	0	0	0	6791	275	10	0	2222	0	GRIN3B	19	1007860	Frame_Shift_Ins	INS	-	TCGA-BP-5169-01A-01D-1429-08		1007860	58121123	49	23387											
MUC16	94025	broad.mit.edu	37	19	9067792	9067792	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	9067792	C	C	9067792	3	2	404	1	0	0	0	0	1	0	0	0	9980	1667	58	3	24197	3	MUC16	19	9067792	Missense_Mutation	SNP	T	TCGA-BP-5169-01A-01D-1429-08	8059932	9067792	50061191	50	23388											
YIF1B	90522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38799931	38799931	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	38799931	T	A	38799931	3	1	404	1	0	0	0	0	1	0	0	0	17488	1638	57	5	714	5	YIF1B	19	38799931	Missense_Mutation	SNP	T	TCGA-BP-5169-01A-01D-1429-08	29732139	38799931	20329052	51	23389											
TPX2	22974	broad.mit.edu;ucsc.edu	37	20	30365398	30365398	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	C	30365398	C	C	30365398	3	2	404	1	0	0	0	0	1	0	0	0	16444	246	9	5	865	5	TPX2	20	30365398	Missense_Mutation	SNP	A	TCGA-BP-5169-01A-01D-1429-08		30365398	32660122	52	23390											
MYL9	10398	broad.mit.edu	37	20	35177531	35177531	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	35177531	A	A	35177531	3	1	404	1	0	0	0	0	1	0	0	0	10061	1087	38	1	408	1	MYL9	20	35177531	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	4812133	35177531	27847989	53	23391											
NTSR1	4923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	61341142	61341142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	61341142	G	A	61341142	3	1	404	1	0	0	0	0	1	0	0	0	10717	1087	38	1	585	1	NTSR1	20	61341142	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08	26163611	61341142	1684378	54	23392											
IL17RA	23765	hgsc.bcm.edu	37	22	17589955	17589955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	17589955	G	A	17589955	3	1	404	1	0	0	0	0	1	0	0	0	7646	1116	39	1	1896	1	IL17RA	22	17589955	Missense_Mutation	SNP	G	TCGA-BP-5169-01A-01D-1429-08		17589955	33714611	55	23393											
C22orf9	0	hgsc.bcm.edu	37	22	45601731	45601731	+	Silent	SNP	C	C	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	45601731	C	A	45601731	2	1	404	1	0	0	0	0	0	0	0	1	2153	581	21	4		4	C22orf9	22	45601731	Silent	SNP	C	TCGA-BP-5169-01A-01D-1429-08	28011776	45601731	5702835	56	23394											
GSPT2	23708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	51488138	51488138	+	Silent	SNP	T	T	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	51488138	T	A	51488138	2	1	404	1	0	0	0	0	0	0	0	1	6834	1770	62	5		5	GSPT2	23	51488138	Silent	SNP	T	TCGA-BP-5169-01A-01D-1429-08		51488138	103782422	57	23395											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53228213	53228213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	53228213	C	A	53228213	3	1	404	1	0	0	0	0	1	0	0	0	8142	710	25	4	2639	4	KDM5C	23	53228213	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	1740075	53228213	102042347	58	23396											
FAM122C	159091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	133941717	133941717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5169-01A-01D-1429-08	TCGA-BP-5169-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3527b21e-972b-4c31-b5de-8c394ce0e500	5ea7625d-1eb6-45d7-add0-a91070f4ebcb	A	133941717	C	A	133941717	3	1	404	1	0	0	0	0	1	0	0	0	5425	739	26	4	203	4	FAM122C	23	133941717	Missense_Mutation	SNP	C	TCGA-BP-5169-01A-01D-1429-08	80713504	133941717	21328843	59	23397											
CLSPN	63967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36230187	36230187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	36230187	T	A	36230187	3	1	405	1	0	0	0	0	1	0	0	0	3562	1841	64	5	3849	5	CLSPN	1	36230187	Missense_Mutation	SNP	T	TCGA-BP-5170-01A-01D-1429-08		36230187	213020434	1	23398											
TSPAN1	10103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46646810	46646810	+	Missense_Mutation	SNP	A	A	G	rs184135661	by1000genomes	TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	G	46646810	A	G	46646810	3	3	405	1	0	0	0	0	1	0	0	0	16645	333	12	3	33	3	TSPAN1	1	46646810	Missense_Mutation	SNP	A	TCGA-BP-5170-01A-01D-1429-08	10416623	46646810	202603811	2	23399											
IL12RB2	3595	hgsc.bcm.edu;ucsc.edu	37	1	67845752	67845761	+	Frame_Shift_Del	DEL	CTGACAGCTG	CTGACAGCTG	-	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	CTGACAGCTG	CTGACAGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	-	67845761	CTGACAGCTG	-	67845752	7	5	405	1	0	1	0	1	0	0	0	0	7634	912	32	0	1847	0	IL12RB2	1	67845752	Frame_Shift_Del	DEL	CTGACAGCTG	TCGA-BP-5170-01A-01D-1429-08	21198942	67845752	181404869	3	23400											
ABCD3	5825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94953300	94953300	+	Silent	SNP	T	T	C	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	C	94953300	T	C	94953300	2	2	405	1	0	0	0	0	0	0	0	1	62	1838	64	3		3	ABCD3	1	94953300	Silent	SNP	T	TCGA-BP-5170-01A-01D-1429-08	27107548	94953300	154297321	4	23401											
S100A5	6276	hgsc.bcm.edu;ucsc.edu	37	1	153509895	153509895	+	Silent	SNP	G	G	A	rs3795395	bycluster;byfrequency;by1000genomes	TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	153509895	G	A	153509895	2	1	405	1	0	0	0	0	0	0	0	1	13794	1048	37	1		1	S100A5	1	153509895	Silent	SNP	G	TCGA-BP-5170-01A-01D-1429-08	58556595	153509895	95740726	5	23402											
ISG20L2	81875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156697247	156697247	+	Silent	SNP	C	C	T	rs61742814		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	156697247	C	T	156697247	2	4	405	1	0	0	0	0	0	0	0	1	7862	639	23	1		1	ISG20L2	1	156697247	Silent	SNP	C	TCGA-BP-5170-01A-01D-1429-08	3187352	156697247	92553374	6	23403											
BRP44	0	broad.mit.edu;hgsc.bcm.edu	37	1	167887490	167887490	+	RNA	SNP	A	A	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	167887490	A	T	167887490	1	4	405	0	1	0	0	0	0	0	0	0	1520	116	4	5		5	BRP44	1	167887490	RNA	SNP	A	TCGA-BP-5170-01A-01D-1429-08	11190243	167887490	81363131	7	23404											
APOB	338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	21225774	21225774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	21225774	C	T	21225774	3	4	405	1	0	0	0	0	1	0	0	0	785	594	21	2	1175	2	APOB	2	21225774	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08		21225774	221973599	8	23405											
RANBP2	5903	broad.mit.edu;hgsc.bcm.edu	37	2	109384150	109384150	+	Silent	SNP	A	A	G	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	G	109384150	A	G	109384150	2	3	405	1	0	0	0	0	0	0	0	1	13041	243	9	3		3	RANBP2	2	109384150	Silent	SNP	A	TCGA-BP-5170-01A-01D-1429-08	88158376	109384150	133815223	9	23406											
SCG2	7857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	224463043	224463043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	224463043	C	A	224463043	3	1	405	1	0	0	0	0	1	0	0	0	13904	710	25	4	899	4	SCG2	2	224463043	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08	115078893	224463043	18736330	10	23407											
VHL	7428	ucsc.edu	37	3	10188190	10188196	+	Splice_Site	DEL	CCCGATA	CCCGATA	-	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	CCCGATA	CCCGATA	CCCGATA	-	CCCGATA	CCCGATA	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	-	10188196	CCCGATA	-	10188190	8	5	405	1	0	1	0	1	0	0	1	0	17174	870	30	0		0	VHL	3	10188190	Splice_Site	DEL	CCCGATA	TCGA-BP-5170-01A-01D-1429-08		10188190	187834240	11	23408											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52668655	52668655	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	52668655	G	A	52668655	4	1	405	1	0	0	0	0	0	1	0	0	11498	1357	47	2	3716	2	PBRM1	3	52668655	Nonsense_Mutation	SNP	G	TCGA-BP-5170-01A-01D-1429-08	42480465	52668655	145353775	12	23409											
CACNA1D	776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	53844188	53844188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	53844188	C	A	53844188	3	1	405	1	0	0	0	0	1	0	0	0	2543	680	24	4	6413	4	CACNA1D	3	53844188	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08	1175533	53844188	144178242	13	23410											
PIK3R4	30849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130454821	130454821	+	Silent	SNP	T	T	C	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	C	130454821	T	C	130454821	2	2	405	1	0	0	0	0	0	0	0	1	11928	1567	55	3		3	PIK3R4	3	130454821	Silent	SNP	T	TCGA-BP-5170-01A-01D-1429-08	76610633	130454821	67567609	14	23411											
TBC1D19	55296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	26741524	26741524	+	Silent	SNP	T	T	C	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	C	26741524	T	C	26741524	2	2	405	1	0	0	0	0	0	0	0	1	15619	1490	52	3		3	TBC1D19	4	26741524	Silent	SNP	T	TCGA-BP-5170-01A-01D-1429-08		26741524	164412752	15	23412											
DCTD	1635	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	183836682	183836682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	183836682	C	T	183836682	3	4	405	1	0	0	0	0	1	0	0	0	4307	864	30	2	516	2	DCTD	4	183836682	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08	157095158	183836682	7317594	16	23413											
ZNF622	90441	hgsc.bcm.edu;ucsc.edu	37	5	16465400	16465400	+	Missense_Mutation	SNP	C	C	G	rs113566156	bycluster;byfrequency;by1000genomes	TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	G	16465400	C	G	16465400	3	3	405	1	0	0	0	0	1	0	0	0	18058	680	24	4	1082	4	ZNF622	5	16465400	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08		16465400	164449860	17	23414											
PRR16	51334	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	120021872	120021872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	120021872	G	T	120021872	3	4	405	1	0	0	0	0	1	0	0	0	12599	1000	35	4	320	4	PRR16	5	120021872	Missense_Mutation	SNP	G	TCGA-BP-5170-01A-01D-1429-08	103556472	120021872	60893388	18	23415											
CD74	972	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149792311	149792311	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	149792311	A	T	149792311	3	4	405	1	0	0	0	0	1	0	0	0	3037	217	8	5	924	5	CD74	5	149792311	Missense_Mutation	SNP	A	TCGA-BP-5170-01A-01D-1429-08	29770439	149792311	31122949	19	23416											
RNF145	153830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	158603687	158603687	+	Silent	SNP	A	A	G	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	G	158603687	A	G	158603687	2	3	405	1	0	0	0	0	0	0	0	1	13460	11	1	3		3	RNF145	5	158603687	Silent	SNP	A	TCGA-BP-5170-01A-01D-1429-08	8811376	158603687	22311573	20	23417											
UIMC1	51720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176332369	176332369	+	Silent	SNP	A	A	G	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	G	176332369	A	G	176332369	2	3	405	1	0	0	0	0	0	0	0	1	16983	69	3	3		3	UIMC1	5	176332369	Silent	SNP	A	TCGA-BP-5170-01A-01D-1429-08	17728682	176332369	4582891	21	23418											
RREB1	6239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7231393	7231393	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	7231393	T	A	7231393	3	1	405	1	0	0	0	0	1	0	0	0	13692	1551	54	5	3087	5	RREB1	6	7231393	Missense_Mutation	SNP	T	TCGA-BP-5170-01A-01D-1429-08		7231393	163883674	22	23419											
MOXD1	26002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	132643865	132643865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	C	132643865	T	C	132643865	3	2	405	1	0	0	0	0	1	0	0	0	9727	1812	63	3	603	3	MOXD1	6	132643865	Missense_Mutation	SNP	T	TCGA-BP-5170-01A-01D-1429-08	125412472	132643865	38471202	23	23420											
CDK6	1021	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92252376	92252376	+	Silent	SNP	A	A	G	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	G	92252376	A	G	92252376	2	3	405	1	0	0	0	0	0	0	0	1	3150	214	8	3		3	CDK6	7	92252376	Silent	SNP	A	TCGA-BP-5170-01A-01D-1429-08		92252376	66886287	24	23421											
FOXP2	93986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	114282567	114282567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	114282567	C	T	114282567	3	4	405	1	0	0	0	0	1	0	0	0	6034	565	20	2	1034	2	FOXP2	7	114282567	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08	22030191	114282567	44856096	25	23422											
ADAM9	8754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38899622	38899622	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	38899622	T	A	38899622	3	1	405	1	0	0	0	0	1	0	0	0	253	1580	55	5	1334	5	ADAM9	8	38899622	Missense_Mutation	SNP	T	TCGA-BP-5170-01A-01D-1429-08		38899622	107464400	26	23423											
DCAF13	25879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	104438314	104438314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	G	104438314	A	G	104438314	3	3	405	1	0	0	0	0	1	0	0	0	4268	247	9	3	879	3	DCAF13	8	104438314	Missense_Mutation	SNP	A	TCGA-BP-5170-01A-01D-1429-08	65538692	104438314	41925708	27	23424											
ERP44	23071	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	102822388	102822388	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	-	102822388	T	-	102822388	7	5	405	1	0	1	0	1	0	0	0	0	5245	1493	52	0	1140	0	ERP44	9	102822388	Frame_Shift_Del	DEL	T	TCGA-BP-5170-01A-01D-1429-08		102822388	38391043	28	23425											
C10orf2	56652	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	102749574	102749574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	102749574	C	T	102749574	3	4	405	1	0	0	0	0	1	0	0	0	1599	826	29	2	1423	2	C10orf2	10	102749574	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08		102749574	32785173	29	23426											
PLA2G16	11145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63357820	63357820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	63357820	C	T	63357820	3	4	405	1	0	0	0	0	1	0	0	0	12000	710	25	2	357	2	PLA2G16	11	63357820	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08		63357820	71648696	30	23427											
CEP164	22897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117265695	117265695	+	Silent	SNP	C	C	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	117265695	C	T	117265695	2	4	405	1	0	0	0	0	0	0	0	1	3251	581	21	2		2	CEP164	11	117265695	Silent	SNP	C	TCGA-BP-5170-01A-01D-1429-08	53907875	117265695	17740821	31	23428											
MLL	4297	hgsc.bcm.edu;ucsc.edu	37	11	118372561	118372561	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	118372561	T	A	118372561	4	1	405	1	0	0	0	0	0	1	0	0	9627	1821	63	5	6587	5	MLL	11	118372561	Nonsense_Mutation	SNP	T	TCGA-BP-5170-01A-01D-1429-08	1106866	118372561	16633955	32	23429											
SLC6A12	6539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	318976	318976	+	Silent	SNP	G	G	C	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	C	318976	G	C	318976	2	2	405	1	0	0	0	0	0	0	0	1	14688	929	33	4		4	SLC6A12	12	318976	Silent	SNP	G	TCGA-BP-5170-01A-01D-1429-08		318976	133532919	33	23430											
PARP4	143	broad.mit.edu;hgsc.bcm.edu	37	13	25008976	25008976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	25008976	G	T	25008976	3	4	405	1	0	0	0	0	1	0	0	0	11470	1174	41	4	887	4	PARP4	13	25008976	Missense_Mutation	SNP	G	TCGA-BP-5170-01A-01D-1429-08		25008976	90160902	34	23431											
SNW1	22938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	78217740	78217740	+	Silent	SNP	A	A	G	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	G	78217740	A	G	78217740	2	3	405	1	0	0	0	0	0	0	0	1	14892	214	8	3		3	SNW1	14	78217740	Silent	SNP	A	TCGA-BP-5170-01A-01D-1429-08		78217740	29131800	35	23432											
RPS2	6187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2012906	2012906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	2012906	A	T	2012906	3	4	405	1	0	0	0	0	1	0	0	0	13644	14	1	5	513	5	RPS2	16	2012906	Missense_Mutation	SNP	A	TCGA-BP-5170-01A-01D-1429-08		2012906	88341847	36	23433											
ZFP3	124961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4995604	4995604	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	C	4995604	A	C	4995604	3	2	405	1	0	0	0	0	1	0	0	0	17655	449	16	5	807	5	ZFP3	17	4995604	Missense_Mutation	SNP	A	TCGA-BP-5170-01A-01D-1429-08		4995604	76199606	37	23434											
CD300LG	146894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41931245	41931245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	T	41931245	G	T	41931245	3	4	405	1	0	0	0	0	1	0	0	0	3004	1310	46	4	566	4	CD300LG	17	41931245	Missense_Mutation	SNP	G	TCGA-BP-5170-01A-01D-1429-08	36935641	41931245	39263965	38	23435	283	2									
CD300LG	146894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41931246	41931246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	41931246	C	A	41931246	3	1	405	1	0	0	0	0	1	0	0	0	3004	739	26	4	567	4	CD300LG	17	41931246	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08	1	41931246	39263964	39	23436	283	2									
C17orf71	0	hgsc.bcm.edu;ucsc.edu	37	17	57292221	57292225	+	Frame_Shift_Del	DEL	CCCTT	CCCTT	-	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	CCCTT	CCCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	-	57292225	CCCTT	-	57292221	7	5	405	1	0	1	0	1	0	0	0	0	1880	507	18	0	2848	0	C17orf71	17	57292221	Frame_Shift_Del	DEL	CCCTT	TCGA-BP-5170-01A-01D-1429-08	15360975	57292221	23902989	40	23437											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	6983136	6983136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	6983136	C	A	6983136	3	1	405	1	0	0	0	0	1	0	0	0	8612	739	26	4	3565	4	LAMA1	18	6983136	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08		6983136	71094112	41	23438											
CATSPERG	57828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38853135	38853135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	38853135	C	A	38853135	3	1	405	1	0	0	0	0	1	0	0	0	2694	854	30	4	2347	4	CATSPERG	19	38853135	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08		38853135	20275848	42	23439											
ZNF611	81856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53209367	53209367	+	Missense_Mutation	SNP	C	C	A	rs144132013	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	53209367	C	A	53209367	3	1	405	1	0	0	0	0	1	0	0	0	18049	536	19	4	1180	4	ZNF611	19	53209367	Missense_Mutation	SNP	C	TCGA-BP-5170-01A-01D-1429-08	14356232	53209367	5919616	43	23440											
PAX1	5075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	21689243	21689243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	A	21689243	G	A	21689243	3	1	405	1	0	0	0	0	1	0	0	0	11485	942	33	2	974	2	PAX1	20	21689243	Missense_Mutation	SNP	G	TCGA-BP-5170-01A-01D-1429-08		21689243	41336277	44	23441											
CXorf21	80231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	30578381	30578381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5170-01A-01D-1429-08	TCGA-BP-5170-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68761b2c-66b9-4adf-9b60-955f79ed0f11	bd5e01bf-68f5-4812-be2b-ccf301ca6b1b	C	30578381	T	C	30578381	3	2	405	1	0	0	0	0	1	0	0	0	4103	1609	56	3	817	3	CXorf21	23	30578381	Missense_Mutation	SNP	T	TCGA-BP-5170-01A-01D-1429-08		30578381	124692179	45	23442											
DNASE2B	58511	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	84864297	84864297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	84864297	T	C	84864297	3	2	406	1	0	0	0	0	1	0	0	0	4667	1551	54	3	52	3	DNASE2B	1	84864297	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08		84864297	164386324	1	23443											
HIPK1	204851	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	114483183	114483183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	114483183	C	A	114483183	3	1	406	1	0	0	0	0	1	0	0	0	7123	826	29	4	180	4	HIPK1	1	114483183	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	29618886	114483183	134767438	2	23444											
SNX27	81609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151665946	151665946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	151665946	A	G	151665946	3	3	406	1	0	0	0	0	1	0	0	0	14910	72	3	3	1607	3	SNX27	1	151665946	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08	37182763	151665946	97584675	3	23445											
DDR2	4921	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	162749936	162749936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	162749936	C	T	162749936	3	4	406	1	0	0	0	0	1	0	0	0	4339	913	32	2	2530	2	DDR2	1	162749936	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	11083990	162749936	86500685	4	23446											
C1orf112	55732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169811586	169811586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	169811586	T	A	169811586	3	1	406	1	0	0	0	0	1	0	0	0	1987	1638	57	5	1816	5	C1orf112	1	169811586	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	7061650	169811586	79439035	5	23447											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186147782	186147782	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	186147782	A	T	186147782	3	4	406	1	0	0	0	0	1	0	0	0	7227	217	8	5	16592	5	HMCN1	1	186147782	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08	16336196	186147782	63102839	6	23448											
B3GALT2	8707	hgsc.bcm.edu;ucsc.edu	37	1	193149452	193149452	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	-	193149452	C	-	193149452	7	5	406	1	0	1	0	1	0	0	0	0	1248	739	26	0	31	0	B3GALT2	1	193149452	Frame_Shift_Del	DEL	C	TCGA-BP-5173-01A-01D-1429-08	7001670	193149452	56101169	7	23449											
DUSP10	11221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	221912420	221912420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	221912420	C	T	221912420	3	4	406	1	0	0	0	0	1	0	0	0	4812	855	30	2	793	2	DUSP10	1	221912420	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	28762968	221912420	27338201	8	23450											
TARBP1	6894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	234565028	234565028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	234565028	T	A	234565028	3	1	406	1	0	0	0	0	1	0	0	0	15567	1464	51	5	2007	5	TARBP1	1	234565028	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	12652608	234565028	14685593	9	23451											
TTC32	130502	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	20101521	20101521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	20101521	G	A	20101521	3	1	406	1	0	0	0	0	1	0	0	0	16713	1174	41	2	372	2	TTC32	2	20101521	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08		20101521	223097852	10	23452											
C2orf77	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170506866	170506866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	170506866	T	G	170506866	3	3	406	1	0	0	0	0	1	0	0	0	2196	1838	64	5	545	5	C2orf77	2	170506866	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	150405345	170506866	72692507	11	23453											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179485254	179485254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	179485254	G	T	179485254	3	4	406	1	0	0	0	0	1	0	0	0	16747	1020	36	4	62159	4	TTN	2	179485254	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	8978388	179485254	63714119	12	23454											
ZNF804A	91752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	185801482	185801482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	185801482	T	G	185801482	3	3	406	1	0	0	0	0	1	0	0	0	18182	1829	64	5	1373	5	ZNF804A	2	185801482	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	6316228	185801482	57397891	13	23455											
OBFC2A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	192550402	192550402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	192550402	A	C	192550402	3	2	406	1	0	0	0	0	1	0	0	0	10815	449	16	5	545	5	OBFC2A	2	192550402	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08	6748920	192550402	50648971	14	23456											
NBEAL1	65065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	204002984	204002984	+	Silent	SNP	A	A	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	204002984	A	T	204002984	2	4	406	1	0	0	0	0	0	0	0	1	10195	381	14	5		5	NBEAL1	2	204002984	Silent	SNP	A	TCGA-BP-5173-01A-01D-1429-08	11452582	204002984	39196389	15	23457											
SPHKAP	80309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228886626	228886626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	228886626	G	T	228886626	3	4	406	1	0	0	0	0	1	0	0	0	15060	1368	48	4	4632	4	SPHKAP	2	228886626	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	24883642	228886626	14312747	16	23458											
TRIP12	9320	broad.mit.edu;ucsc.edu	37	2	230650536	230650536	+	Silent	SNP	C	A	A	rs189366062	by1000genomes;alternate_allele	TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	230650536	A	A	230650536	2	1	406	1	0	0	0	0	0	0	0	1	16568	639	23	4		4	TRIP12	2	230650536	Silent	SNP	C	TCGA-BP-5173-01A-01D-1429-08	1763910	230650536	12548837	17	23459											
VHL	7428	broad.mit.edu	37	3	10183739	10183739	+	Nonsense_Mutation	SNP	G	T	T	rs5030802		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina GAIIx	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	10183739	T	T	10183739	4	4	406	1	0	0	0	0	0	1	0	0	17174	1059	37	4	210	4	VHL	3	10183739	Nonsense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08		10183739	187838691	18	23460											
C3orf58	205428	broad.mit.edu	37	3	143691724	143691724	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	143691724	T	T	143691724	3	4	406	1	0	0	0	0	1	0	0	0	2238	1087	38	4	552	4	C3orf58	3	143691724	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	133507985	143691724	54330706	19	23461											
ATP10D	57205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	47527622	47527622	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	47527622	A	T	47527622	3	4	406	1	0	0	0	0	1	0	0	0	1118	72	3	5	753	5	ATP10D	4	47527622	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08		47527622	143626654	20	23462											
CXCL11	6373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	76956490	76956490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	76956490	G	T	76956490	3	4	406	1	0	0	0	0	1	0	0	0	4081	1232	43	4	229	4	CXCL11	4	76956490	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	29428868	76956490	114197786	21	23463											
C4orf37	0	hgsc.bcm.edu	37	4	99064290	99064290	+	Silent	SNP	C	C	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	99064290	C	A	99064290	2	1	406	1	0	0	0	0	0	0	0	1	2269	610	22	4		4	C4orf37	4	99064290	Silent	SNP	C	TCGA-BP-5173-01A-01D-1429-08	22107800	99064290	92089986	22	23464											
SYNPO2	171024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	119947951	119947951	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	119947951	G	C	119947951	3	2	406	1	0	0	0	0	1	0	0	0	15469	971	34	4	437	4	SYNPO2	4	119947951	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	20883661	119947951	71206325	23	23465	284	2									
SYNPO2	171024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	119947953	119947953	+	Silent	SNP	T	T	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	119947953	T	A	119947953	2	1	406	1	0	0	0	0	0	0	0	1	15469	1567	55	5		5	SYNPO2	4	119947953	Silent	SNP	T	TCGA-BP-5173-01A-01D-1429-08	2	119947953	71206323	24	23466	284	2									
USP53	54532	broad.mit.edu;ucsc.edu	37	4	120182905	120182905	+	Silent	SNP	T	C	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	120182905	C	C	120182905	2	2	406	1	0	0	0	0	0	0	0	1	17096	1403	49	3		3	USP53	4	120182905	Silent	SNP	T	TCGA-BP-5173-01A-01D-1429-08	234952	120182905	70971371	25	23467											
TMEM184C	55751	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	148555356	148555356	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	148555356	T	G	148555356	3	3	406	1	0	0	0	0	1	0	0	0	16118	1841	64	5	1126	5	TMEM184C	4	148555356	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	28372451	148555356	42598920	26	23468											
GALNT7	51809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	174219381	174219381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	174219381	C	A	174219381	3	1	406	1	0	0	0	0	1	0	0	0	6225	797	28	4	1103	4	GALNT7	4	174219381	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	25664025	174219381	16934895	27	23469											
GPR98	84059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	89971958	89971958	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	89971958	T	A	89971958	3	1	406	1	0	0	0	0	1	0	0	0	6728	1435	50	5	5473	5	GPR98	5	89971958	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08		89971958	90943302	28	23470											
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127782277	127782277	+	Silent	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	127782277	G	A	127782277	2	1	406	1	0	0	0	0	0	0	0	1	5710	1164	41	2		2	FBN2	5	127782277	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	37810319	127782277	53132983	29	23471											
CHSY3	337876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	129520380	129520380	+	Silent	SNP	G	G	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	129520380	G	T	129520380	2	4	406	1	0	0	0	0	0	0	0	1	3415	1190	42	4		4	CHSY3	5	129520380	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	1738103	129520380	51394880	30	23472											
BRD8	10902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137503709	137503709	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	137503709	A	T	137503709	3	4	406	1	0	0	0	0	1	0	0	0	1508	188	7	5	3146	5	BRD8	5	137503709	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08	7983329	137503709	43411551	31	23473											
PCDHB8	56128	broad.mit.edu;hgsc.bcm.edu	37	5	140559268	140559268	+	Silent	SNP	G	G	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	140559268	G	T	140559268	2	4	406	1	0	0	0	0	0	0	0	1	11555	1335	47	4		4	PCDHB8	5	140559268	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	3055559	140559268	40355992	32	23474											
POLH	5429	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43571729	43571729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	43571729	C	A	43571729	3	1	406	1	0	0	0	0	1	0	0	0	12209	826	29	4	887	4	POLH	6	43571729	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08		43571729	127543338	33	23475											
GJA10	84694	hgsc.bcm.edu	37	6	90604514	90604514	+	Silent	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	90604514	G	A	90604514	2	1	406	1	0	0	0	0	0	0	0	1	6408	1165	41	2		2	GJA10	6	90604514	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	47032785	90604514	80510553	34	23476											
PLG	5340	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	161152841	161152841	+	Silent	SNP	A	A	G	rs150227219	alternate_allele	TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	161152841	A	G	161152841	2	3	406	1	0	0	0	0	0	0	0	1	12093	204	8	3		3	PLG	6	161152841	Silent	SNP	A	TCGA-BP-5173-01A-01D-1429-08	70548327	161152841	9962226	35	23477											
COBL	23242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	51094361	51094361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	51094361	G	A	51094361	3	1	406	1	0	0	0	0	1	0	0	0	3655	1159	40	1	411	1	COBL	7	51094361	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08		51094361	108044302	36	23478											
MUC17	140453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100680818	100680818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	100680818	G	A	100680818	3	1	406	1	0	0	0	0	1	0	0	0	9981	1291	45	2	6131	2	MUC17	7	100680818	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	49586457	100680818	58457845	37	23479											
SLC13A1	6561	hgsc.bcm.edu;ucsc.edu	37	7	122757654	122757654	+	Silent	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	122757654	G	A	122757654	2	1	406	1	0	0	0	0	0	0	0	1	14404	1335	47	2		2	SLC13A1	7	122757654	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	22076836	122757654	36381009	38	23480											
HIPK2	28996	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	139415959	139415959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	139415959	T	C	139415959	3	2	406	1	0	0	0	0	1	0	0	0	7124	1609	56	3	2777	3	HIPK2	7	139415959	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	16658305	139415959	19722704	39	23481											
CNTNAP2	26047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	146829477	146829477	+	Silent	SNP	T	T	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	146829477	T	C	146829477	2	2	406	1	0	0	0	0	0	0	0	1	3649	1654	58	3		3	CNTNAP2	7	146829477	Silent	SNP	T	TCGA-BP-5173-01A-01D-1429-08	7413518	146829477	12309186	40	23482											
DAPK1	1612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	90321652	90321652	+	Silent	SNP	C	C	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	90321652	C	T	90321652	2	4	406	1	0	0	0	0	0	0	0	1	4237	813	29	2		2	DAPK1	9	90321652	Silent	SNP	C	TCGA-BP-5173-01A-01D-1429-08		90321652	50891779	41	23483											
SVEP1	79987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	113276281	113276281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	113276281	G	A	113276281	3	1	406	1	0	0	0	0	1	0	0	0	15432	1000	35	2	9825	2	SVEP1	9	113276281	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	22954629	113276281	27937150	42	23484											
DBH	1621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136522203	136522203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	136522203	A	G	136522203	3	3	406	1	0	0	0	0	1	0	0	0	4252	304	11	3	1616	3	DBH	9	136522203	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08	23245922	136522203	4691228	43	23485											
SEC16A	9919	broad.mit.edu;hgsc.bcm.edu	37	9	139370322	139370322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	139370322	C	A	139370322	3	1	406	1	0	0	0	0	1	0	0	0	13999	912	32	4	5447	4	SEC16A	9	139370322	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	2848119	139370322	1843109	44	23486											
DIP2C	22982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	445051	445051	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	445051	T	A	445051	4	1	406	1	0	0	0	0	0	1	0	0	4531	1792	62	5	3524	5	DIP2C	10	445051	Nonsense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08		445051	135089696	45	23487											
IL2RA	3559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	6067802	6067802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	6067802	C	T	6067802	3	4	406	1	0	0	0	0	1	0	0	0	7693	797	28	2	595	2	IL2RA	10	6067802	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	5622751	6067802	129466945	46	23488											
OGDHL	55753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	50947858	50947858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	50947858	C	T	50947858	3	4	406	1	0	0	0	0	1	0	0	0	10847	797	28	2	892	2	OGDHL	10	50947858	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	44880056	50947858	84586889	47	23489											
LCOR	84458	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	98715214	98715214	+	Silent	SNP	A	A	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	98715214	A	G	98715214	2	3	406	1	0	0	0	0	0	0	0	1	8696	349	13	3		3	LCOR	10	98715214	Silent	SNP	A	TCGA-BP-5173-01A-01D-1429-08	47767356	98715214	36819533	48	23490											
FAM178A	55719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	102719193	102719193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	102719193	C	A	102719193	3	1	406	1	0	0	0	0	1	0	0	0	5507	564	20	4	3500	4	FAM178A	10	102719193	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	4003979	102719193	32815554	49	23491											
EBF3	253738	broad.mit.edu;hgsc.bcm.edu	37	10	131761928	131761928	+	Silent	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	131761928	G	A	131761928	2	1	406	1	0	0	0	0	0	0	0	1	4884	1074	38	1		1	EBF3	10	131761928	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	29042735	131761928	3772819	50	23492											
CREBZF	58487	broad.mit.edu;ucsc.edu	37	11	85374911	85374911	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	85374911	C	C	85374911	3	2	406	1	0	0	0	0	1	0	0	0	3865	275	10	5	59	5	CREBZF	11	85374911	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08		85374911	49631605	51	23493											
FOLH1B	219595	broad.mit.edu;hgsc.bcm.edu	37	11	89429850	89429850	+	Missense_Mutation	SNP	G	G	C	rs141697840	alternate_allele	TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	89429850	G	C	89429850	3	2	406	1	0	0	0	0	1	0	0	0	5987	971	34	4	1138	4	FOLH1B	11	89429850	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	4054939	89429850	45576666	52	23494											
ATM	472	hgsc.bcm.edu	37	11	108206572	108206572	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	108206572	G	C	108206572	3	2	406	1	0	0	0	0	1	0	0	0	1109	1246	43	4	8370	4	ATM	11	108206572	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	18776722	108206572	26799944	53	23495											
SDHD	6392	broad.mit.edu;hgsc.bcm.edu	37	11	111959648	111959648	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	111959648	T	A	111959648	3	1	406	1	0	0	0	0	1	0	0	0	13980	1551	54	5	237	5	SDHD	11	111959648	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	3753076	111959648	23046868	54	23496											
OR10G9	219870	broad.mit.edu;hgsc.bcm.edu	37	11	123894277	123894277	+	Silent	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	123894277	G	A	123894277	2	1	406	1	0	0	0	0	0	0	0	1	10911	1335	47	2		2	OR10G9	11	123894277	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	11934629	123894277	11112239	55	23497											
VWA5A	4013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123988558	123988558	+	Silent	SNP	A	A	G	rs150034934	byfrequency	TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	123988558	A	G	123988558	2	3	406	1	0	0	0	0	0	0	0	1	17254	407	15	3		3	VWA5A	11	123988558	Silent	SNP	A	TCGA-BP-5173-01A-01D-1429-08	94281	123988558	11017958	56	23498											
GLIPR1L1	256710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	75737689	75737689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	75737689	T	G	75737689	3	3	406	1	0	0	0	0	1	0	0	0	6449	1464	51	5	397	5	GLIPR1L1	12	75737689	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08		75737689	58114206	57	23499											
MGAT4C	25834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	86373140	86373140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	86373140	C	T	86373140	3	4	406	1	0	0	0	0	1	0	0	0	9554	478	17	2	76	2	MGAT4C	12	86373140	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	10635451	86373140	47478755	58	23500											
UBE3B	89910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	109967774	109967774	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	109967774	T	A	109967774	3	1	406	1	0	0	0	0	1	0	0	0	16892	1493	52	5	2797	5	UBE3B	12	109967774	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	23594634	109967774	23884121	59	23501											
OR4K13	390433	broad.mit.edu;ucsc.edu	37	14	20502565	20502565	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	20502565	G	G	20502565	3	3	406	1	0	0	0	0	1	0	0	0	11075	217	8	3	563	3	OR4K13	14	20502565	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08		20502565	86846975	60	23502											
PDIA3	2923	broad.mit.edu;hgsc.bcm.edu	37	15	44060741	44060741	+	Silent	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	44060741	G	A	44060741	2	1	406	1	0	0	0	0	0	0	0	1	11676	1277	45	2		2	PDIA3	15	44060741	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08		44060741	58470651	61	23503											
SPATA5L1	79029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45706846	45706846	+	Silent	SNP	T	T	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	45706846	T	C	45706846	2	2	406	1	0	0	0	0	0	0	0	1	15024	1471	51	3		3	SPATA5L1	15	45706846	Silent	SNP	T	TCGA-BP-5173-01A-01D-1429-08	1646105	45706846	56824546	62	23504											
PRTG	283659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	56032778	56032778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	56032778	G	A	56032778	3	1	406	1	0	0	0	0	1	0	0	0	12648	1174	41	2	3329	2	PRTG	15	56032778	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	10325932	56032778	46498614	63	23505											
GLCE	26035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	69561171	69561171	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	69561171	C	G	69561171	3	3	406	1	0	0	0	0	1	0	0	0	6439	913	32	4	1452	4	GLCE	15	69561171	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	13528393	69561171	32970221	64	23506											
LASS3	0	broad.mit.edu;hgsc.bcm.edu	37	15	100943022	100943022	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	100943022	C	G	100943022	3	3	406	1	0	0	0	0	1	0	0	0	8647	864	30	4	107	4	LASS3	15	100943022	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	31381851	100943022	1588370	65	23507											
CHST4	10164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71570904	71570904	+	Silent	SNP	C	C	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	71570904	C	A	71570904	2	1	406	1	0	0	0	0	0	0	0	1	3408	900	32	4		4	CHST4	16	71570904	Silent	SNP	C	TCGA-BP-5173-01A-01D-1429-08		71570904	18783849	66	23508											
CHST5	23563	hgsc.bcm.edu	37	16	75564068	75564068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	75564068	C	T	75564068	3	4	406	1	0	0	0	0	1	0	0	0	3409	768	27	1	1024	1	CHST5	16	75564068	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	3993164	75564068	14790685	67	23509											
MAF	4094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	79633710	79633710	+	Silent	SNP	A	A	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	79633710	A	G	79633710	2	3	406	1	0	0	0	0	0	0	0	1	9162	127	5	3		3	MAF	16	79633710	Silent	SNP	A	TCGA-BP-5173-01A-01D-1429-08	4069642	79633710	10721043	68	23510											
OR1D2	4991	broad.mit.edu;hgsc.bcm.edu	37	17	2996190	2996190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	2996190	A	G	2996190	3	3	406	1	0	0	0	0	1	0	0	0	10960	217	8	3	840	3	OR1D2	17	2996190	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08		2996190	78199020	69	23511											
C17orf98	388381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36997521	36997521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	36997521	G	A	36997521	3	1	406	1	0	0	0	0	1	0	0	0	1895	1116	39	1	354	1	C17orf98	17	36997521	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	34001331	36997521	44197689	70	23512											
C17orf53	78995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42232723	42232723	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	42232723	T	A	42232723	3	1	406	1	0	0	0	0	1	0	0	0	1864	1754	61	5	1747	5	C17orf53	17	42232723	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	5235202	42232723	38962487	71	23513											
ZNF652	22834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	47388778	47388778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	47388778	G	T	47388778	3	4	406	1	0	0	0	0	1	0	0	0	18077	1174	41	4	623	4	ZNF652	17	47388778	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	5156055	47388778	33806432	72	23514											
BZRAP1	9256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56395795	56395795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	56395795	C	T	56395795	3	4	406	1	0	0	0	0	1	0	0	0	1579	739	26	2	3927	2	BZRAP1	17	56395795	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	9007017	56395795	24799415	73	23515	285	2									
BZRAP1	9256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56395796	56395796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	56395796	C	T	56395796	3	4	406	1	0	0	0	0	1	0	0	0	1579	623	22	2	3928	2	BZRAP1	17	56395796	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	1	56395796	24799414	74	23516	285	2									
COG1	9382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	71197742	71197742	+	Silent	SNP	T	T	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	71197742	T	C	71197742	2	2	406	1	0	0	0	0	0	0	0	1	3659	1800	63	3		3	COG1	17	71197742	Silent	SNP	T	TCGA-BP-5173-01A-01D-1429-08	14801946	71197742	9997468	75	23517											
THOC1	9984	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	214641	214641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	214641	A	C	214641	3	2	406	1	0	0	0	0	1	0	0	0	15876	214	8	5	18	5	THOC1	18	214641	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08		214641	77862607	76	23518											
MYO5B	4645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	47463681	47463681	+	Silent	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	47463681	G	A	47463681	2	1	406	1	0	0	0	0	0	0	0	1	10086	1078	38	1		1	MYO5B	18	47463681	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	47249040	47463681	30613567	77	23519											
SERPINB5	5268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	61154236	61154236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	61154236	G	A	61154236	3	1	406	1	0	0	0	0	1	0	0	0	14117	1174	41	2	232	2	SERPINB5	18	61154236	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	13690555	61154236	16923012	78	23520											
TMEM146	0	hgsc.bcm.edu;ucsc.edu	37	19	5749189	5749191	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	-	5749191	ATC	-	5749189	7	5	406	1	0	1	0	1	0	0	0	0	16072	101	4	0	1024	0	TMEM146	19	5749189	In_Frame_Del	DEL	ATC	TCGA-BP-5173-01A-01D-1429-08		5749189	53379794	79	23521											
ZNF560	147741	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9578114	9578114	+	Silent	SNP	A	A	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	9578114	A	C	9578114	2	2	406	1	0	0	0	0	0	0	0	1	18003	1	1	5		5	ZNF560	19	9578114	Silent	SNP	A	TCGA-BP-5173-01A-01D-1429-08	3828925	9578114	49550869	80	23522											
PLVAP	83483	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17487791	17487791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	17487791	G	T	17487791	3	4	406	1	0	0	0	0	1	0	0	0	12123	962	34	4	1045	4	PLVAP	19	17487791	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	7909677	17487791	41641192	81	23523											
MAP1S	55201	broad.mit.edu	37	19	17836823	17836823	+	Silent	SNP	C	T	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	17836823	T	T	17836823	2	4	406	1	0	0	0	0	0	0	0	1	9241	854	30	2		2	MAP1S	19	17836823	Silent	SNP	C	TCGA-BP-5173-01A-01D-1429-08	349032	17836823	41292160	82	23524											
KIAA1683	80726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18376414	18376414	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	18376414	G	C	18376414	3	2	406	1	0	0	0	0	1	0	0	0	8258	1290	45	4	2175	4	KIAA1683	19	18376414	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	539591	18376414	40752569	83	23525											
DPY19L3	147991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	32968514	32968514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	G	32968514	A	G	32968514	3	3	406	1	0	0	0	0	1	0	0	0	4744	43	2	3	1846	3	DPY19L3	19	32968514	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08	14592100	32968514	26160469	84	23526											
ARHGAP33	115703	hgsc.bcm.edu;ucsc.edu	37	19	36275074	36275074	+	Silent	SNP	G	G	A	rs62112163	bycluster;byfrequency;by1000genomes	TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	36275074	G	A	36275074	2	1	406	1	0	0	0	0	0	0	0	1	882	1275	44	2		2	ARHGAP33	19	36275074	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	3306560	36275074	22853909	85	23527											
ZNF761	388561	broad.mit.edu;hgsc.bcm.edu	37	19	53958116	53958116	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	53958116	T	A	53958116	3	1	406	1	0	0	0	0	1	0	0	0	18148	1722	60	5	366	5	ZNF761	19	53958116	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	17683042	53958116	5170867	86	23528											
LILRB3	11025	hgsc.bcm.edu	37	19	54726241	54726241	+	Missense_Mutation	SNP	C	C	T	rs77279742	bycluster;by1000genomes	TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	54726241	C	T	54726241	3	4	406	1	0	0	0	0	1	0	0	0	8799	826	29	2	1678	2	LILRB3	19	54726241	Missense_Mutation	SNP	C	TCGA-BP-5173-01A-01D-1429-08	768125	54726241	4402742	87	23529											
HMOX1	3162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	35783139	35783139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	35783139	G	T	35783139	3	4	406	1	0	0	0	0	1	0	0	0	7250	991	35	4	616	4	HMOX1	22	35783139	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08		35783139	15521427	88	23530											
FBLN1	2192	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45938163	45938163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	45938163	G	A	45938163	3	1	406	1	0	0	0	0	1	0	0	0	5705	1130	39	1	1233	1	FBLN1	22	45938163	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	10155024	45938163	5366403	89	23531											
SAT1	6303	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	23803813	23803813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	23803813	G	A	23803813	3	1	406	1	0	0	0	0	1	0	0	0	13864	1000	35	2	378	2	SAT1	23	23803813	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08		23803813	131466747	90	23532	286	2									
SAT1	6303	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	23803814	23803814	+	Silent	SNP	G	G	A	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	23803814	G	A	23803814	2	1	406	1	0	0	0	0	0	0	0	1	13864	1252	44	2		2	SAT1	23	23803814	Silent	SNP	G	TCGA-BP-5173-01A-01D-1429-08	1	23803814	131466746	91	23533	286	2									
HDAC6	10013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48674583	48674583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	C	48674583	T	C	48674583	3	2	406	1	0	0	0	0	1	0	0	0	7018	1435	50	3	1595	3	HDAC6	23	48674583	Missense_Mutation	SNP	T	TCGA-BP-5173-01A-01D-1429-08	24870769	48674583	106595977	92	23534											
OGT	8473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	70756094	70756094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	70756094	G	T	70756094	3	4	406	1	0	0	0	0	1	0	0	0	10854	1174	41	4	110	4	OGT	23	70756094	Missense_Mutation	SNP	G	TCGA-BP-5173-01A-01D-1429-08	22081511	70756094	84514466	93	23535											
MAGEA12	4111	broad.mit.edu	37	X	151896334	151896334	+	RNA	SNP	G	A	A	rs2515828	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	A	151896334	A	A	151896334	1	1	406	0	1	0	0	0	0	0	0	0	9173	1131	39	1		1	MAGEA12	23	151896334	RNA	SNP	G	TCGA-BP-5173-01A-01D-1429-08	81140240	151896334	3374226	94	23536											
FLNA	2316	broad.mit.edu	37	X	153599613	153599613	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	-	153599613	-	-	153599613	7	5	406	1	0	1	0	1	0	0	0	0	5940	1493	52	0	8130	0	FLNA	23	153599613	Frame_Shift_Del	DEL	T	TCGA-BP-5173-01A-01D-1429-08	1703279	153599613	1670947	95	23537											
F8	2157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	154157680	154157680	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5173-01A-01D-1429-08	TCGA-BP-5173-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ce0a5fc-09ae-412a-8a5b-56d9a44433aa	e8cec496-e3ba-4927-8c01-cb8ad45b56b6	T	154157680	A	T	154157680	3	4	406	1	0	0	0	0	1	0	0	0	5352	72	3	5	2750	5	F8	23	154157680	Missense_Mutation	SNP	A	TCGA-BP-5173-01A-01D-1429-08	558067	154157680	1112880	96	23538											
MFAP2	4237	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	17303611	17303611	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	C	17303611	G	C	17303611	3	2	407	1	0	0	0	0	1	0	0	0	9521	1252	44	4	459	4	MFAP2	1	17303611	Missense_Mutation	SNP	G	TCGA-BP-5174-01A-01D-1429-08		17303611	231947010	1	23539											
GRHL3	57822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24666207	24666207	+	Silent	SNP	C	C	G	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	G	24666207	C	G	24666207	2	3	407	1	0	0	0	0	0	0	0	1	6772	668	24	4		4	GRHL3	1	24666207	Silent	SNP	C	TCGA-BP-5174-01A-01D-1429-08	7362596	24666207	224584414	2	23540											
TMEM39B	55116	broad.mit.edu	37	1	32557586	32557586	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	32557586	T	T	32557586	3	4	407	1	0	0	0	0	1	0	0	0	16174	1203	42	4	923	4	TMEM39B	1	32557586	Missense_Mutation	SNP	G	TCGA-BP-5174-01A-01D-1429-08	7891379	32557586	216693035	3	23541											
PIGK	10026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	77627328	77627328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	77627328	G	T	77627328	3	4	407	1	0	0	0	0	1	0	0	0	11897	1000	35	4	554	4	PIGK	1	77627328	Missense_Mutation	SNP	G	TCGA-BP-5174-01A-01D-1429-08	45069742	77627328	171623293	4	23542											
SASS6	163786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100571393	100571393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	100571393	G	T	100571393	3	4	407	1	0	0	0	0	1	0	0	0	13863	1000	35	4	518	4	SASS6	1	100571393	Missense_Mutation	SNP	G	TCGA-BP-5174-01A-01D-1429-08	22944065	100571393	148679228	5	23543											
ZNF687	57592	broad.mit.edu	37	1	151262327	151262328	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	C	151262328	C	C	151262327	7	5	407	1	0	1	1	0	0	0	0	0	18104	962	34	0	2826	0	ZNF687	1	151262327	Frame_Shift_Ins	INS	-	TCGA-BP-5174-01A-01D-1429-08	50690934	151262327	97988294	6	23544											
DISC1	27185	broad.mit.edu;hgsc.bcm.edu	37	1	231829671	231829671	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	231829671	T	A	231829671	3	1	407	1	0	0	0	0	1	0	0	0	4540	1783	62	5	173	5	DISC1	1	231829671	Missense_Mutation	SNP	T	TCGA-BP-5174-01A-01D-1429-08	80567344	231829671	17420950	7	23545											
TEKT4	150483	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	95537442	95537442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	95537442	C	A	95537442	3	1	407	1	0	0	0	0	1	0	0	0	15767	680	24	4	120	4	TEKT4	2	95537442	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08		95537442	147661931	8	23546											
DNAJC10	54431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	183601013	183601013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	183601013	C	T	183601013	3	4	407	1	0	0	0	0	1	0	0	0	4631	507	18	2	921	2	DNAJC10	2	183601013	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08	88063571	183601013	59598360	9	23547											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188204	10188219	+	Frame_Shift_Del	DEL	TTTGGCTCTTCAGAGA	TTTGGCTCTTCAGAGA	-	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	TTTGGCTCTTCAGAGA	TTTGGCTCTTCAGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	-	10188219	TTTGGCTCTTCAGAGA	-	10188204	7	5	407	1	0	1	0	1	0	0	0	0	17174	1609	56	0	353	0	VHL	3	10188204	Frame_Shift_Del	DEL	TTTGGCTCTTCAGAGA	TCGA-BP-5174-01A-01D-1429-08		10188204	187834226	10	23548											
BAP1	8314	broad.mit.edu	37	3	52436397	52436397	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	-	52436397	-	-	52436397	7	5	407	1	0	1	0	1	0	0	0	0	1311	726	26	0	96	0	BAP1	3	52436397	Frame_Shift_Del	DEL	C	TCGA-BP-5174-01A-01D-1429-08	42248193	52436397	145586033	11	23549											
TRAT1	50852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	108572551	108572551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	108572551	C	A	108572551	3	1	407	1	0	0	0	0	1	0	0	0	16478	826	29	4	410	4	TRAT1	3	108572551	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08	56136154	108572551	89449879	12	23550											
DHX36	170506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	154022915	154022915	+	Silent	SNP	T	T	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	154022915	T	A	154022915	2	1	407	1	0	0	0	0	0	0	0	1	4511	1567	55	5		5	DHX36	3	154022915	Silent	SNP	T	TCGA-BP-5174-01A-01D-1429-08	45450364	154022915	43999515	13	23551											
SH3TC1	54436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	8217896	8217896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	8217896	G	T	8217896	3	4	407	1	0	0	0	0	1	0	0	0	14274	1310	46	4	558	4	SH3TC1	4	8217896	Missense_Mutation	SNP	G	TCGA-BP-5174-01A-01D-1429-08		8217896	182936380	14	23552											
C4orf37	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	98902354	98902354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	98902354	C	T	98902354	3	4	407	1	0	0	0	0	1	0	0	0	2269	565	20	2	675	2	C4orf37	4	98902354	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08	90684458	98902354	92251922	15	23553											
TACR3	6870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	104512654	104512654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	104512654	G	T	104512654	3	4	407	1	0	0	0	0	1	0	0	0	15519	933	33	4	330	4	TACR3	4	104512654	Missense_Mutation	SNP	G	TCGA-BP-5174-01A-01D-1429-08	5610300	104512654	86641622	16	23554											
FAT4	79633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	126328192	126328192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	126328192	C	T	126328192	3	4	407	1	0	0	0	0	1	0	0	0	5699	855	30	2	5475	2	FAT4	4	126328192	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08	21815538	126328192	64826084	17	23555											
SLC35A4	113829	broad.mit.edu;ucsc.edu	37	5	139947164	139947164	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	139947164	T	T	139947164	3	4	407	1	0	0	0	0	1	0	0	0	14586	1087	38	4	412	4	SLC35A4	5	139947164	Missense_Mutation	SNP	G	TCGA-BP-5174-01A-01D-1429-08		139947164	40968096	18	23556											
RSPH9	221421	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43613007	43613007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	C	43613007	T	C	43613007	3	2	407	1	0	0	0	0	1	0	0	0	13721	1522	53	3	174	3	RSPH9	6	43613007	Missense_Mutation	SNP	T	TCGA-BP-5174-01A-01D-1429-08		43613007	127502060	19	23557											
SNX14	57231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	86258029	86258029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	G	86258029	A	G	86258029	3	3	407	1	0	0	0	0	1	0	0	0	14898	420	15	3	2067	3	SNX14	6	86258029	Missense_Mutation	SNP	A	TCGA-BP-5174-01A-01D-1429-08	42645022	86258029	84857038	20	23558											
SLC22A16	85413	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	110763477	110763477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	110763477	C	T	110763477	3	4	407	1	0	0	0	0	1	0	0	0	14460	681	24	2	600	2	SLC22A16	6	110763477	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08	24505448	110763477	60351590	21	23559											
PKD1L1	168507	broad.mit.edu;hgsc.bcm.edu	37	7	47869026	47869026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	G	47869026	T	G	47869026	3	3	407	1	0	0	0	0	1	0	0	0	11971	1838	64	5	1873	5	PKD1L1	7	47869026	Missense_Mutation	SNP	T	TCGA-BP-5174-01A-01D-1429-08		47869026	111269637	22	23560											
TMEM168	64418	hgsc.bcm.edu;ucsc.edu	37	7	112412960	112412960	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	-	112412960	A	-	112412960	7	5	407	1	0	1	0	1	0	0	0	0	16095	127	5	0	679	0	TMEM168	7	112412960	Frame_Shift_Del	DEL	A	TCGA-BP-5174-01A-01D-1429-08	64543934	112412960	46725703	23	23561											
RBM28	55131	broad.mit.edu;hgsc.bcm.edu	37	7	127979814	127979814	+	Silent	SNP	G	G	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	127979814	G	A	127979814	2	1	407	1	0	0	0	0	0	0	0	1	13141	1277	45	2		2	RBM28	7	127979814	Silent	SNP	G	TCGA-BP-5174-01A-01D-1429-08	15566854	127979814	31158849	24	23562											
AKR1B15	441282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134261744	134261744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	G	134261744	T	G	134261744	3	3	407	1	0	0	0	0	1	0	0	0	468	1461	51	5	885	5	AKR1B15	7	134261744	Missense_Mutation	SNP	T	TCGA-BP-5174-01A-01D-1429-08	6281930	134261744	24876919	25	23563											
PTPRN2	5799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	157475557	157475557	+	Missense_Mutation	SNP	C	C	G	rs144004975	alternate_allele	TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	G	157475557	C	G	157475557	3	3	407	1	0	0	0	0	1	0	0	0	12821	507	18	4	1230	4	PTPRN2	7	157475557	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08	23213813	157475557	1663106	26	23564											
DPYS	1807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	105456595	105456595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	G	105456595	A	G	105456595	3	3	407	1	0	0	0	0	1	0	0	0	4748	159	6	3	909	3	DPYS	8	105456595	Missense_Mutation	SNP	A	TCGA-BP-5174-01A-01D-1429-08		105456595	40907427	27	23565											
APBA1	320	broad.mit.edu	37	9	72131197	72131197	+	Silent	SNP	G	A	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	72131197	A	A	72131197	2	1	407	1	0	0	0	0	0	0	0	1	756	1190	42	2		2	APBA1	9	72131197	Silent	SNP	G	TCGA-BP-5174-01A-01D-1429-08		72131197	69082234	28	23566											
SMC5	23137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	72897437	72897437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	C	72897437	A	C	72897437	3	2	407	1	0	0	0	0	1	0	0	0	14799	43	2	5	945	5	SMC5	9	72897437	Missense_Mutation	SNP	A	TCGA-BP-5174-01A-01D-1429-08	766240	72897437	68315994	29	23567											
FAM188A	80013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	15879243	15879243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	G	15879243	A	G	15879243	3	3	407	1	0	0	0	0	1	0	0	0	5518	14	1	3	841	3	FAM188A	10	15879243	Missense_Mutation	SNP	A	TCGA-BP-5174-01A-01D-1429-08		15879243	119655504	30	23568											
MICAL2	9645	hgsc.bcm.edu	37	11	12243299	12243299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	12243299	G	A	12243299	3	1	407	1	0	0	0	0	1	0	0	0	9577	1203	42	2	1345	2	MICAL2	11	12243299	Missense_Mutation	SNP	G	TCGA-BP-5174-01A-01D-1429-08		12243299	122763217	31	23569											
C11orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	33566837	33566837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	33566837	C	T	33566837	3	4	407	1	0	0	0	0	1	0	0	0	1642	855	30	2	2431	2	C11orf41	11	33566837	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08	21323538	33566837	101439679	32	23570											
ELK3	2004	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	96640767	96640767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	96640767	C	A	96640767	3	1	407	1	0	0	0	0	1	0	0	0	5062	913	32	4	263	4	ELK3	12	96640767	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08		96640767	37211128	33	23571											
MYH7	4625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23894489	23894489	+	Splice_Site	SNP	A	A	T	rs111726379	bycluster	TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	23894489	A	T	23894489	5	4	407	1	0	0	0	0	0	0	1	0	10046	173	6	5	3462	5	MYH7	14	23894489	Splice_Site	SNP	A	TCGA-BP-5174-01A-01D-1429-08		23894489	83455051	34	23572											
SLC38A8	146167	hgsc.bcm.edu;ucsc.edu	37	16	84066953	84066953	+	Missense_Mutation	SNP	G	G	C	rs142587413	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	C	84066953	G	C	84066953	3	2	407	1	0	0	0	0	1	0	0	0	14623	1048	37	4	829	4	SLC38A8	16	84066953	Missense_Mutation	SNP	G	TCGA-BP-5174-01A-01D-1429-08		84066953	6287800	35	23573											
LILRA2	11027	broad.mit.edu	37	19	55086976	55086976	+	Silent	SNP	C	T	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	55086976	T	T	55086976	2	4	407	1	0	0	0	0	0	0	0	1	8792	639	23	1		1	LILRA2	19	55086976	Silent	SNP	C	TCGA-BP-5174-01A-01D-1429-08		55086976	4042007	36	23574											
ADIG	149685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	37214721	37214721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	37214721	C	A	37214721	3	1	407	1	0	0	0	0	1	0	0	0	316	709	25	4	180	4	ADIG	20	37214721	Missense_Mutation	SNP	C	TCGA-BP-5174-01A-01D-1429-08		37214721	25810799	37	23575											
C20orf108	0	hgsc.bcm.edu;ucsc.edu	37	20	54941313	54941314	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	T	54941314	-	T	54941313	7	5	407	1	0	1	1	0	0	0	0	0	2080	320	12	0	559	0	C20orf108	20	54941313	Frame_Shift_Ins	INS	-	TCGA-BP-5174-01A-01D-1429-08	17726592	54941313	8084207	38	23576											
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	41385099	41385099	+	Silent	SNP	G	G	A	novel		TCGA-BP-5174-01A-01D-1429-08	TCGA-BP-5174-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	53b5cf8d-f3cf-4e7e-91ec-b0c907d1c13f	7ad1d38e-234e-42e5-8518-258dc6c72e00	A	41385099	G	A	41385099	2	1	407	1	0	0	0	0	0	0	0	1	4770	1103	39	1		1	DSCAM	21	41385099	Silent	SNP	G	TCGA-BP-5174-01A-01D-1429-08		41385099	6744796	39	23577											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11217299	11217299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	G	11217299	A	G	11217299	3	3	408	1	0	0	0	0	1	0	0	0	9961	72	3	3	3386	3	MTOR	1	11217299	Missense_Mutation	SNP	A	TCGA-BP-5175-01A-01D-1429-08		11217299	238033322	1	23578											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19455528	19455528	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	19455528	G	A	19455528	4	1	408	1	0	0	0	0	0	1	0	0	16916	1328	46	2	6788	2	UBR4	1	19455528	Nonsense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08	8238229	19455528	229795093	2	23579											
COL24A1	255631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	86453338	86453338	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	86453338	C	A	86453338	5	1	408	1	0	0	0	0	0	0	1	0	3685	695	24	4	2998	4	COL24A1	1	86453338	Splice_Site	SNP	C	TCGA-BP-5175-01A-01D-1429-08	66997810	86453338	162797283	3	23580											
GPATCH4	54865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156565621	156565621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	156565621	G	T	156565621	3	4	408	1	0	0	0	0	1	0	0	0	6600	1377	48	4	619	4	GPATCH4	1	156565621	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08	70112283	156565621	92685000	4	23581											
DEDD	9191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161093979	161093979	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	161093979	T	A	161093979	3	1	408	1	0	0	0	0	1	0	0	0	4386	1464	51	5	698	5	DEDD	1	161093979	Missense_Mutation	SNP	T	TCGA-BP-5175-01A-01D-1429-08	4528358	161093979	88156642	5	23582											
PCP4L1	654790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161254256	161254256	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	-	161254256	G	-	161254256	7	5	408	1	0	1	0	1	0	0	0	0	11606	991	35	0	202	0	PCP4L1	1	161254256	Frame_Shift_Del	DEL	G	TCGA-BP-5175-01A-01D-1429-08	160277	161254256	87996365	6	23583											
KIDINS220	57498	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	8953448	8953448	+	Silent	SNP	A	A	C	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	C	8953448	A	C	8953448	2	2	408	1	0	0	0	0	0	0	0	1	8278	349	13	5		5	KIDINS220	2	8953448	Silent	SNP	A	TCGA-BP-5175-01A-01D-1429-08		8953448	234245925	7	23584											
C2orf49	79074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	105959481	105959481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	105959481	G	A	105959481	3	1	408	1	0	0	0	0	1	0	0	0	2173	1029	36	2	453	2	C2orf49	2	105959481	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08	97006033	105959481	137239892	8	23585											
GPR17	2840	broad.mit.edu	37	2	128407597	128407597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	128407597	A	A	128407597	3	1	408	1	0	0	0	0	1	0	0	0	6674	1116	39	1	13	1	GPR17	2	128407597	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08	22448116	128407597	114791776	9	23586											
ZNF804A	91752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	185802977	185802977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	C	185802977	T	C	185802977	3	2	408	1	0	0	0	0	1	0	0	0	18182	1841	64	3	2868	3	ZNF804A	2	185802977	Missense_Mutation	SNP	T	TCGA-BP-5175-01A-01D-1429-08	57395380	185802977	57396396	10	23587											
CUL3	8452	hgsc.bcm.edu;ucsc.edu	37	2	225370726	225370727	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	-	225370727	GA	-	225370726	7	5	408	1	0	1	0	1	0	0	0	0	4058	1174	41	0	1189	0	CUL3	2	225370726	Frame_Shift_Del	DEL	GA	TCGA-BP-5175-01A-01D-1429-08	39567749	225370726	17828647	11	23588											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10183752	10183752	+	Missense_Mutation	SNP	T	A	A	rs5030803	alternate_allele	TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina GAIIx	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	10183752	A	A	10183752	3	1	408	1	0	0	0	0	1	0	0	0	17174	1667	58	5	223	5	VHL	3	10183752	Missense_Mutation	SNP	T	TCGA-BP-5175-01A-01D-1429-08		10183752	187838678	12	23589											
OXSR1	9943	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38287677	38287677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	G	38287677	C	G	38287677	3	3	408	1	0	0	0	0	1	0	0	0	11343	913	32	4	1272	4	OXSR1	3	38287677	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	28103925	38287677	159734753	13	23590											
FBXO40	51725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121340772	121340772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	121340772	G	T	121340772	3	4	408	1	0	0	0	0	1	0	0	0	5756	1377	48	4	502	4	FBXO40	3	121340772	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08	83053095	121340772	76681658	14	23591											
GPR78	27201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	8584302	8584302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	8584302	G	A	8584302	3	1	408	1	0	0	0	0	1	0	0	0	6717	1087	38	1	719	1	GPR78	4	8584302	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08		8584302	182569974	15	23592											
UBA6	55236	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	68514833	68514833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	68514833	C	T	68514833	3	4	408	1	0	0	0	0	1	0	0	0	16844	922	32	2	2037	2	UBA6	4	68514833	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	59930531	68514833	122639443	16	23593											
NDST4	64579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	115858556	115858556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	115858556	C	T	115858556	3	4	408	1	0	0	0	0	1	0	0	0	10265	507	18	2	1333	2	NDST4	4	115858556	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	47343723	115858556	75295720	17	23594											
BRD9	65980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	864640	864640	+	Silent	SNP	G	G	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	864640	G	T	864640	2	4	408	1	0	0	0	0	0	0	0	1	1509	1219	43	4		4	BRD9	5	864640	Silent	SNP	G	TCGA-BP-5175-01A-01D-1429-08		864640	180050620	18	23595											
CDH12	1010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	21783501	21783501	+	Silent	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	21783501	C	T	21783501	2	4	408	1	0	0	0	0	0	0	0	1	3100	755	27	1		1	CDH12	5	21783501	Silent	SNP	C	TCGA-BP-5175-01A-01D-1429-08	20918861	21783501	159131759	19	23596											
PDZD2	23037	broad.mit.edu;hgsc.bcm.edu	37	5	32088233	32088233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	32088233	C	T	32088233	3	4	408	1	0	0	0	0	1	0	0	0	11708	913	32	2	4753	2	PDZD2	5	32088233	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	10304732	32088233	148827027	20	23597	287	2									
PDZD2	23037	broad.mit.edu;hgsc.bcm.edu	37	5	32088238	32088238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	32088238	C	T	32088238	3	4	408	1	0	0	0	0	1	0	0	0	11708	623	22	2	4758	2	PDZD2	5	32088238	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	5	32088238	148827022	21	23598	287	2									
PDZD2	23037	broad.mit.edu;hgsc.bcm.edu	37	5	32090571	32090571	+	Silent	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	32090571	C	T	32090571	2	4	408	1	0	0	0	0	0	0	0	1	11708	816	29	2		2	PDZD2	5	32090571	Silent	SNP	C	TCGA-BP-5175-01A-01D-1429-08	2333	32090571	148824689	22	23599											
PDE6A	5145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149240511	149240511	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	149240511	C	A	149240511	4	1	408	1	0	0	0	0	0	1	0	0	11652	632	22	4	56	4	PDE6A	5	149240511	Nonsense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	117149940	149240511	31674749	23	23600											
TNXB	7148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	32065169	32065169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	32065169	C	T	32065169	3	4	408	1	0	0	0	0	1	0	0	0	16358	710	25	2	14420	2	TNXB	6	32065169	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08		32065169	139049898	24	23601											
MRPS18A	55168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43642986	43642986	+	Silent	SNP	A	A	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	43642986	A	T	43642986	2	4	408	1	0	0	0	0	0	0	0	1	9835	291	11	5		5	MRPS18A	6	43642986	Silent	SNP	A	TCGA-BP-5175-01A-01D-1429-08	11577817	43642986	127472081	25	23602											
ANKRD6	22881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90338835	90338835	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	-	90338835	C	-	90338835	7	5	408	1	0	1	0	1	0	0	0	0	685	855	30	0	1544	0	ANKRD6	6	90338835	Frame_Shift_Del	DEL	C	TCGA-BP-5175-01A-01D-1429-08	46695849	90338835	80776232	26	23603											
RUNX1T1	862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	92982925	92982925	+	Silent	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	92982925	G	A	92982925	2	1	408	1	0	0	0	0	0	0	0	1	13760	1136	40	1		1	RUNX1T1	8	92982925	Silent	SNP	G	TCGA-BP-5175-01A-01D-1429-08		92982925	53381097	27	23604											
SYT15	83849	broad.mit.edu;hgsc.bcm.edu	37	10	46968694	46968694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	46968694	G	A	46968694	3	1	408	1	0	0	0	0	1	0	0	0	15483	1348	47	2	1101	2	SYT15	10	46968694	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08		46968694	88566053	28	23605											
KNDC1	85442	broad.mit.edu;hgsc.bcm.edu	37	10	135012532	135012532	+	Silent	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	135012532	G	A	135012532	2	1	408	1	0	0	0	0	0	0	0	1	8433	1103	39	1		1	KNDC1	10	135012532	Silent	SNP	G	TCGA-BP-5175-01A-01D-1429-08	88043838	135012532	522215	29	23606											
MUC2	4583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1078457	1078457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	1078457	G	A	1078457	3	1	408	1	0	0	0	0	1	0	0	0	9982	1101	38	1	687	1	MUC2	11	1078457	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08		1078457	133928059	30	23607											
WT1	7490	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32417899	32417899	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	32417899	T	A	32417899	3	1	408	1	0	0	0	0	1	0	0	0	17420	1667	58	5	416	5	WT1	11	32417899	Missense_Mutation	SNP	T	TCGA-BP-5175-01A-01D-1429-08	31339442	32417899	102588617	31	23608											
MAPK8IP1	9479	broad.mit.edu;hgsc.bcm.edu	37	11	45925587	45925587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	45925587	C	A	45925587	3	1	408	1	0	0	0	0	1	0	0	0	9291	681	24	4	1567	4	MAPK8IP1	11	45925587	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	13507688	45925587	89080929	32	23609											
SSRP1	6749	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57099909	57099909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	G	57099909	T	G	57099909	3	3	408	1	0	0	0	0	1	0	0	0	15206	1435	50	5	1353	5	SSRP1	11	57099909	Missense_Mutation	SNP	T	TCGA-BP-5175-01A-01D-1429-08	11174322	57099909	77906607	33	23610											
MS4A10	341116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60561455	60561455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	60561455	G	A	60561455	3	1	408	1	0	0	0	0	1	0	0	0	9862	1319	46	2	385	2	MS4A10	11	60561455	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08	3461546	60561455	74445061	34	23611											
SLC22A8	9376	hgsc.bcm.edu;ucsc.edu	37	11	62782211	62782211	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	-	62782211	G	-	62782211	7	5	408	1	0	1	0	1	0	0	0	0	14473	1000	35	0	1448	0	SLC22A8	11	62782211	Frame_Shift_Del	DEL	G	TCGA-BP-5175-01A-01D-1429-08	2220756	62782211	72224305	35	23612											
PCNXL3	399909	broad.mit.edu;hgsc.bcm.edu	37	11	65402821	65402821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	65402821	C	T	65402821	3	4	408	1	0	0	0	0	1	0	0	0	11600	739	26	2	5208	2	PCNXL3	11	65402821	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	2620610	65402821	69603695	36	23613											
OR6C3	254786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55725604	55725604	+	Silent	SNP	G	G	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	55725604	G	T	55725604	2	4	408	1	0	0	0	0	0	0	0	1	11199	1277	45	4		4	OR6C3	12	55725604	Silent	SNP	G	TCGA-BP-5175-01A-01D-1429-08		55725604	78126291	37	23614											
OR5AU1	390445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21623848	21623848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	21623848	G	A	21623848	3	1	408	1	0	0	0	0	1	0	0	0	11154	1000	35	2	754	2	OR5AU1	14	21623848	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08		21623848	85725692	38	23615											
MYH7	4625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23894068	23894068	+	Silent	SNP	T	T	C	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	C	23894068	T	C	23894068	2	2	408	1	0	0	0	0	0	0	0	1	10046	1509	53	3		3	MYH7	14	23894068	Silent	SNP	T	TCGA-BP-5175-01A-01D-1429-08	2270220	23894068	83455472	39	23616											
PTGER2	5732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	52782081	52782081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	52782081	C	T	52782081	3	4	408	1	0	0	0	0	1	0	0	0	12754	507	18	2	817	2	PTGER2	14	52782081	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	28888013	52782081	54567459	40	23617											
CCNB2	9133	broad.mit.edu	37	15	59417125	59417125	+	3'UTR	SNP	T	C	C	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	C	59417125	C	C	59417125	1	2	408	0	1	0	0	0	0	0	0	0	2915	1508	52	3		3	CCNB2	15	59417125	3'UTR	SNP	T	TCGA-BP-5175-01A-01D-1429-08		59417125	43114267	41	23618											
CLEC16A	23274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	11217730	11217730	+	Silent	SNP	C	C	G	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	G	11217730	C	G	11217730	2	3	408	1	0	0	0	0	0	0	0	1	3502	784	28	4		4	CLEC16A	16	11217730	Silent	SNP	C	TCGA-BP-5175-01A-01D-1429-08		11217730	79137023	42	23619											
NKD1	85407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	50583388	50583388	+	Silent	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	50583388	C	T	50583388	2	4	408	1	0	0	0	0	0	0	0	1	10448	874	31	1		1	NKD1	16	50583388	Silent	SNP	C	TCGA-BP-5175-01A-01D-1429-08	39365658	50583388	39771365	43	23620											
SYNRG	11276	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	35946642	35946642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	35946642	C	T	35946642	3	4	408	1	0	0	0	0	1	0	0	0	15472	632	22	2	3837	2	SYNRG	17	35946642	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08		35946642	45248568	44	23621											
ITGA3	3675	broad.mit.edu	37	17	48148756	48148756	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	C	48148756	C	C	48148756	3	2	408	1	0	0	0	0	1	0	0	0	7884	1464	51	3	855	3	ITGA3	17	48148756	Missense_Mutation	SNP	T	TCGA-BP-5175-01A-01D-1429-08	12202114	48148756	33046454	45	23622											
CACNG5	27091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	64880873	64880873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	G	64880873	A	G	64880873	3	3	408	1	0	0	0	0	1	0	0	0	2562	130	5	3	679	3	CACNG5	17	64880873	Missense_Mutation	SNP	A	TCGA-BP-5175-01A-01D-1429-08	16732117	64880873	16314337	46	23623											
HMHA1	23526	hgsc.bcm.edu	37	19	1067422	1067422	+	Silent	SNP	A	A	G	rs76139012	bycluster;byfrequency;by1000genomes	TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	G	1067422	A	G	1067422	2	3	408	1	0	0	0	0	0	0	0	1	7247	40	2	3		3	HMHA1	19	1067422	Silent	SNP	A	TCGA-BP-5175-01A-01D-1429-08		1067422	58061561	47	23624											
ZNF347	84671	broad.mit.edu;ucsc.edu	37	19	53656986	53656986	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	G	53656986	G	G	53656986	3	3	408	1	0	0	0	0	1	0	0	0	17873	695	24	4	2523	4	ZNF347	19	53656986	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	52589564	53656986	5471997	48	23625											
ACSS1	84532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	25011448	25011448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	25011448	G	A	25011448	3	1	408	1	0	0	0	0	1	0	0	0	188	1377	48	2	1539	2	ACSS1	20	25011448	Missense_Mutation	SNP	G	TCGA-BP-5175-01A-01D-1429-08		25011448	38014072	49	23626											
MYH7B	57644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33575921	33575921	+	Silent	SNP	C	C	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	33575921	C	A	33575921	2	1	408	1	0	0	0	0	0	0	0	1	10047	816	29	4		4	MYH7B	20	33575921	Silent	SNP	C	TCGA-BP-5175-01A-01D-1429-08	8564473	33575921	29449599	50	23627											
EDN3	1908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	57876745	57876745	+	Silent	SNP	C	C	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	57876745	C	T	57876745	2	4	408	1	0	0	0	0	0	0	0	1	4920	747	26	2		2	EDN3	20	57876745	Silent	SNP	C	TCGA-BP-5175-01A-01D-1429-08	24300824	57876745	5148775	51	23628											
MED15	51586	broad.mit.edu	37	22	20920819	20920819	+	Silent	SNP	G	A	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	20920819	A	A	20920819	2	1	408	1	0	0	0	0	0	0	0	1	9440	962	34	2		2	MED15	22	20920819	Silent	SNP	G	TCGA-BP-5175-01A-01D-1429-08		20920819	30383747	52	23629											
BRD1	23774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50187702	50187702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	A	50187702	C	A	50187702	3	1	408	1	0	0	0	0	1	0	0	0	1503	623	22	4	865	4	BRD1	22	50187702	Missense_Mutation	SNP	C	TCGA-BP-5175-01A-01D-1429-08	29266883	50187702	1116864	53	23630											
PLXNB2	23654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50724518	50724518	+	Silent	SNP	G	G	T	novel		TCGA-BP-5175-01A-01D-1429-08	TCGA-BP-5175-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30e58a1e-e7db-43ce-a7e8-a1fd21f4438e	7859fd3d-1bb7-4c19-ae09-58763723a5b9	T	50724518	G	T	50724518	2	4	408	1	0	0	0	0	0	0	0	1	12131	987	35	4		4	PLXNB2	22	50724518	Silent	SNP	G	TCGA-BP-5175-01A-01D-1429-08	536816	50724518	580048	54	23631											
PER3	8863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	7886603	7886603	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	7886603	C	A	7886603	4	1	409	1	0	0	0	0	0	1	0	0	11738	893	31	4	2059	4	PER3	1	7886603	Nonsense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08		7886603	241364018	1	23632											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11217303	11217303	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	11217303	C	G	11217303	3	3	409	1	0	0	0	0	1	0	0	0	9961	710	25	4	3390	4	MTOR	1	11217303	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	3330700	11217303	238033318	2	23633											
PRDM2	7799	hgsc.bcm.edu;ucsc.edu	37	1	14108935	14108935	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	14108935	T	-	14108935	7	5	409	1	0	1	0	1	0	0	0	0	12468	1551	54	0	4671	0	PRDM2	1	14108935	Frame_Shift_Del	DEL	T	TCGA-BP-5176-01A-01D-1429-08	2891632	14108935	235141686	3	23634											
MYOM3	127294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24434560	24434560	+	Silent	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	24434560	T	C	24434560	2	2	409	1	0	0	0	0	0	0	0	1	10100	1606	56	3		3	MYOM3	1	24434560	Silent	SNP	T	TCGA-BP-5176-01A-01D-1429-08	10325625	24434560	224816061	4	23635											
NOTCH2	4853	hgsc.bcm.edu;ucsc.edu	37	1	120458462	120458463	+	Frame_Shift_Ins	INS	-	-	TATA	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	TATA	120458463	-	TATA	120458462	7	5	409	1	0	1	1	0	0	0	0	0	10555	1725	60	0	536	0	NOTCH2	1	120458462	Frame_Shift_Ins	INS	-	TCGA-BP-5176-01A-01D-1429-08	96023902	120458462	128792159	5	23636											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201013477	201013477	+	Silent	SNP	C	C	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	201013477	C	G	201013477	2	3	409	1	0	0	0	0	0	0	0	1	2549	871	31	4		4	CACNA1S	1	201013477	Silent	SNP	C	TCGA-BP-5176-01A-01D-1429-08	80555015	201013477	48237144	6	23637											
SIPA1L2	57568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	232650976	232650976	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	232650976	T	A	232650976	3	1	409	1	0	0	0	0	1	0	0	0	14343	1841	64	5	5142	5	SIPA1L2	1	232650976	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	31637499	232650976	16599645	7	23638											
PCNXL2	80003	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	233296143	233296143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	233296143	C	A	233296143	3	1	409	1	0	0	0	0	1	0	0	0	11599	797	28	4	3074	4	PCNXL2	1	233296143	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	645167	233296143	15954478	8	23639											
GTF3C2	2976	hgsc.bcm.edu;ucsc.edu	37	2	27550049	27550049	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	27550049	G	-	27550049	7	5	409	1	0	1	0	1	0	0	0	0	6880	1290	45	0	231	0	GTF3C2	2	27550049	Frame_Shift_Del	DEL	G	TCGA-BP-5176-01A-01D-1429-08		27550049	215649324	9	23640											
OTX1	5013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	63283120	63283120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	63283120	G	A	63283120	3	1	409	1	0	0	0	0	1	0	0	0	11327	1203	42	2	744	2	OTX1	2	63283120	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	35733071	63283120	179916253	10	23641											
RNF103	7844	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	86831681	86831681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	86831681	T	A	86831681	3	1	409	1	0	0	0	0	1	0	0	0	13436	1493	52	5	718	5	RNF103	2	86831681	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	23548561	86831681	156367692	11	23642											
BAZ2B	29994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160268963	160268963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	160268963	G	T	160268963	3	4	409	1	0	0	0	0	1	0	0	0	1332	1386	48	4	4042	4	BAZ2B	2	160268963	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	73437282	160268963	82930410	12	23643											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179613182	179613182	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	179613182	T	-	179613182	7	5	409	1	0	1	0	1	0	0	0	0	16747	1493	52	0	96352	0	TTN	2	179613182	Frame_Shift_Del	DEL	T	TCGA-BP-5176-01A-01D-1429-08	19344219	179613182	63586191	13	23644											
FAM171B	165215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	187615886	187615886	+	Silent	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	187615886	T	C	187615886	2	2	409	1	0	0	0	0	0	0	0	1	5495	1538	54	3		3	FAM171B	2	187615886	Silent	SNP	T	TCGA-BP-5176-01A-01D-1429-08	8002704	187615886	55583487	14	23645											
ABCB6	10058	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220075171	220075171	+	Missense_Mutation	SNP	A	A	C	rs151051476	byfrequency;alternate_allele	TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	220075171	A	C	220075171	3	2	409	1	0	0	0	0	1	0	0	0	45	214	8	5	257	5	ABCB6	2	220075171	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	32459285	220075171	23124202	15	23646											
SP100	6672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	231407658	231407658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	231407658	T	G	231407658	3	3	409	1	0	0	0	0	1	0	0	0	14973	1829	64	5	3319	5	SP100	2	231407658	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	11332487	231407658	11791715	16	23647											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191571	10191571	+	Silent	SNP	G	G	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	10191571	G	T	10191571	2	4	409	1	0	0	0	0	0	0	0	1	17174	1335	47	4		4	VHL	3	10191571	Silent	SNP	G	TCGA-BP-5176-01A-01D-1429-08		10191571	187830859	17	23648	288	2									
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191572	10191572	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	10191572	G	T	10191572	4	4	409	1	0	0	0	0	0	1	0	0	17174	1175	41	4	575	4	VHL	3	10191572	Nonsense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	1	10191572	187830858	18	23649	288	2									
RRP9	9136	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	51971260	51971260	+	Silent	SNP	G	G	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	51971260	G	T	51971260	2	4	409	1	0	0	0	0	0	0	0	1	13704	1219	43	4		4	RRP9	3	51971260	Silent	SNP	G	TCGA-BP-5176-01A-01D-1429-08	41779688	51971260	146051170	19	23650											
RAB43	339122	broad.mit.edu;hgsc.bcm.edu	37	3	128813982	128813982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	128813982	G	A	128813982	3	1	409	1	0	0	0	0	1	0	0	0	12958	1086	38	1	411	1	RAB43	3	128813982	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	76842722	128813982	69208448	20	23651											
CDV3	55573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	133306843	133306843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	133306843	T	C	133306843	3	2	409	1	0	0	0	0	1	0	0	0	3183	1406	49	3	768	3	CDV3	3	133306843	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	4492861	133306843	64715587	21	23652											
GPR171	29909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	150916820	150916820	+	Silent	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	150916820	G	A	150916820	2	1	409	1	0	0	0	0	0	0	0	1	6675	1368	48	2		2	GPR171	3	150916820	Silent	SNP	G	TCGA-BP-5176-01A-01D-1429-08	17609977	150916820	47105610	22	23653											
KCNAB1	7881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	156249255	156249255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	156249255	A	T	156249255	3	4	409	1	0	0	0	0	1	0	0	0	8016	246	9	5	1660	5	KCNAB1	3	156249255	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	5332435	156249255	41773175	23	23654											
KIAA0226	9711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	197410178	197410178	+	Silent	SNP	C	C	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	197410178	C	T	197410178	2	4	409	1	0	0	0	0	0	0	0	1	8169	695	24	2		2	KIAA0226	3	197410178	Silent	SNP	C	TCGA-BP-5176-01A-01D-1429-08	41160923	197410178	612252	24	23655											
FAM114A1	92689	hgsc.bcm.edu;ucsc.edu	37	4	38924467	38924467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	38924467	T	C	38924467	3	2	409	1	0	0	0	0	1	0	0	0	5407	1435	50	3	1048	3	FAM114A1	4	38924467	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08		38924467	152229809	25	23656											
SCARB2	950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77082897	77082897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	77082897	G	A	77082897	3	1	409	1	0	0	0	0	1	0	0	0	13895	1087	38	1	34	1	SCARB2	4	77082897	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	38158430	77082897	114071379	26	23657											
RASGEF1B	153020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	82380577	82380577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	82380577	C	T	82380577	3	4	409	1	0	0	0	0	1	0	0	0	13083	855	30	2	1387	2	RASGEF1B	4	82380577	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	5297680	82380577	108773699	27	23658											
IL15	3600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	142651079	142651079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	142651079	T	G	142651079	3	3	409	1	0	0	0	0	1	0	0	0	7638	1493	52	5	338	5	IL15	4	142651079	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	60270502	142651079	48503197	28	23659											
ACCN5	0	hgsc.bcm.edu;ucsc.edu	37	4	156787340	156787340	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	156787340	G	-	156787340	7	5	409	1	0	1	0	1	0	0	0	0	132	1159	40	0	1518	0	ACCN5	4	156787340	Frame_Shift_Del	DEL	G	TCGA-BP-5176-01A-01D-1429-08	14136261	156787340	34366936	29	23660											
SLCO4C1	353189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	101631681	101631681	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	101631681	G	A	101631681	4	1	409	1	0	0	0	0	0	1	0	0	14743	1299	45	2	1940	2	SLCO4C1	5	101631681	Nonsense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08		101631681	79283579	30	23661											
SPOCK1	6695	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	136328254	136328254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	136328254	G	A	136328254	3	1	409	1	0	0	0	0	1	0	0	0	15091	1115	39	1	714	1	SPOCK1	5	136328254	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	34696573	136328254	44587006	31	23662											
PCDHGA8	9708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140773214	140773214	+	Silent	SNP	A	A	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	140773214	A	G	140773214	2	3	409	1	0	0	0	0	0	0	0	1	11567	204	8	3		3	PCDHGA8	5	140773214	Silent	SNP	A	TCGA-BP-5176-01A-01D-1429-08	4444960	140773214	40142046	32	23663											
FAT2	2196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150901058	150901058	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	150901058	A	T	150901058	3	4	409	1	0	0	0	0	1	0	0	0	5697	420	15	5	1977	5	FAT2	5	150901058	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	10127844	150901058	30014202	33	23664											
CNOT8	9337	hgsc.bcm.edu;ucsc.edu	37	5	154254886	154254899	+	Frame_Shift_Del	DEL	TGTGGGCGGCTCTA	TGTGGGCGGCTCTA	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	TGTGGGCGGCTCTA	TGTGGGCGGCTCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	154254899	TGTGGGCGGCTCTA	-	154254886	7	5	409	1	0	1	0	1	0	0	0	0	3627	1580	55	0	788	0	CNOT8	5	154254886	Frame_Shift_Del	DEL	TGTGGGCGGCTCTA	TCGA-BP-5176-01A-01D-1429-08	3353828	154254886	26660374	34	23665											
ZNF354C	30832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	178506605	178506605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	178506605	G	A	178506605	3	1	409	1	0	0	0	0	1	0	0	0	17878	942	33	2	1186	2	ZNF354C	5	178506605	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	24251719	178506605	2408655	35	23666											
BTNL9	153579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	180483000	180483000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	180483000	G	T	180483000	3	4	409	1	0	0	0	0	1	0	0	0	1570	1203	42	4	970	4	BTNL9	5	180483000	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	1976395	180483000	432260	36	23667	289	2									
BTNL9	153579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	180483001	180483001	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	180483001	C	G	180483001	3	3	409	1	0	0	0	0	1	0	0	0	1570	797	28	4	971	4	BTNL9	5	180483001	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	1	180483001	432259	37	23668	289	2									
ABCF1	23	hgsc.bcm.edu	37	6	30558477	30558478	+	Frame_Shift_Ins	INS	-	-	A	rs72545970	bycluster	TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	30558478	-	A	30558477	7	5	409	1	0	1	1	0	0	0	0	0	65	1285	45	0	2635	0	ABCF1	6	30558477	Frame_Shift_Ins	INS	-	TCGA-BP-5176-01A-01D-1429-08		30558477	140556590	38	23669											
TULP1	7287	broad.mit.edu;hgsc.bcm.edu	37	6	35471404	35471404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	35471404	G	A	35471404	3	1	409	1	0	0	0	0	1	0	0	0	16785	1115	39	1	385	1	TULP1	6	35471404	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	4912927	35471404	135643663	39	23670											
GPR111	222611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	47650019	47650019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	47650019	C	T	47650019	3	4	409	1	0	0	0	0	1	0	0	0	6635	797	28	2	1538	2	GPR111	6	47650019	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	12178615	47650019	123465048	40	23671											
PM20D2	135293	hgsc.bcm.edu	37	6	89855893	89855893	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	89855893	A	C	89855893	3	2	409	1	0	0	0	0	1	0	0	0	12136	69	3	5	32	5	PM20D2	6	89855893	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	42205874	89855893	81259174	41	23672											
UTRN	7402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	144768773	144768773	+	Silent	SNP	A	A	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	144768773	A	T	144768773	2	4	409	1	0	0	0	0	0	0	0	1	17115	204	8	5		5	UTRN	6	144768773	Silent	SNP	A	TCGA-BP-5176-01A-01D-1429-08	54912880	144768773	26346294	42	23673											
SERAC1	84947	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	158541585	158541585	+	Silent	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	158541585	T	C	158541585	2	2	409	1	0	0	0	0	0	0	0	1	14087	1606	56	3		3	SERAC1	6	158541585	Silent	SNP	T	TCGA-BP-5176-01A-01D-1429-08	13772812	158541585	12573482	43	23674											
TBL2	26608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	72985071	72985071	+	Silent	SNP	C	C	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	72985071	C	A	72985071	2	1	409	1	0	0	0	0	0	0	0	1	15654	610	22	4		4	TBL2	7	72985071	Silent	SNP	C	TCGA-BP-5176-01A-01D-1429-08		72985071	86153592	44	23675											
HGF	3082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	81346622	81346622	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	81346622	T	G	81346622	3	3	409	1	0	0	0	0	1	0	0	0	7092	1435	50	5	887	5	HGF	7	81346622	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	8361551	81346622	77792041	45	23676											
KCND2	3751	broad.mit.edu;ucsc.edu	37	7	119914961	119914961	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	119914961	C	C	119914961	3	2	409	1	0	0	0	0	1	0	0	0	8026	1783	62	3	277	3	KCND2	7	119914961	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	38568339	119914961	39223702	46	23677											
ZNF862	643641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	149559035	149559035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	149559035	T	C	149559035	3	2	409	1	0	0	0	0	1	0	0	0	18207	1493	52	3	2812	3	ZNF862	7	149559035	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	29644074	149559035	9579628	47	23678											
ABP1	26	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150558103	150558103	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	150558103	C	G	150558103	3	3	409	1	0	0	0	0	1	0	0	0	98	507	18	4	2076	4	ABP1	7	150558103	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	999068	150558103	8580560	48	23679											
MYOM2	9172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	2020501	2020501	+	Silent	SNP	G	G	A	rs137913055	alternate_allele	TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	2020501	G	A	2020501	2	1	409	1	0	0	0	0	0	0	0	1	10099	1223	43	2		2	MYOM2	8	2020501	Silent	SNP	G	TCGA-BP-5176-01A-01D-1429-08		2020501	144343521	49	23680											
EBF2	64641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	25744310	25744310	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	25744310	G	C	25744310	3	2	409	1	0	0	0	0	1	0	0	0	4883	1386	48	4	785	4	EBF2	8	25744310	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	23723809	25744310	120619712	50	23681											
ZNF703	80139	broad.mit.edu;hgsc.bcm.edu	37	8	37556057	37556057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	37556057	C	A	37556057	3	1	409	1	0	0	0	0	1	0	0	0	18118	506	18	4	1644	4	ZNF703	8	37556057	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	11811747	37556057	108807965	51	23682											
ADAM2	2515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	39624434	39624434	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	39624434	A	C	39624434	3	2	409	1	0	0	0	0	1	0	0	0	241	330	12	5	795	5	ADAM2	8	39624434	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	2068377	39624434	106739588	52	23683											
C8orf45	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67790811	67790811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	67790811	T	A	67790811	3	1	409	1	0	0	0	0	1	0	0	0	2432	1493	52	5	502	5	C8orf45	8	67790811	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	28166377	67790811	78573211	53	23684											
PEX2	5828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	77896064	77896064	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	77896064	T	A	77896064	3	1	409	1	0	0	0	0	1	0	0	0	11752	1606	56	5	570	5	PEX2	8	77896064	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	10105253	77896064	68467958	54	23685											
EPPK1	83481	hgsc.bcm.edu	37	8	144940723	144940725	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	144940725	GGC	-	144940723	7	5	409	1	0	1	0	1	0	0	0	0	5192	1335	47	0	567	0	EPPK1	8	144940723	In_Frame_Del	DEL	GGC	TCGA-BP-5176-01A-01D-1429-08	67044659	144940723	1423299	55	23686											
IFNA21	3452	broad.mit.edu	37	9	21166125	21166125	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	21166125	A	A	21166125	3	1	409	1	0	0	0	0	1	0	0	0	7545	710	25	4	86	4	IFNA21	9	21166125	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08		21166125	120047306	56	23687											
UNC13B	10497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35396577	35396577	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	35396577	G	C	35396577	3	2	409	1	0	0	0	0	1	0	0	0	16997	1232	43	4	3268	4	UNC13B	9	35396577	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	14230452	35396577	105816854	57	23688											
FAM166B	730112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35563218	35563218	+	Silent	SNP	T	T	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	35563218	T	G	35563218	2	3	409	1	0	0	0	0	0	0	0	1	5486	1625	57	5		5	FAM166B	9	35563218	Silent	SNP	T	TCGA-BP-5176-01A-01D-1429-08	166641	35563218	105650213	58	23689	290	2									
FAM166B	730112	broad.mit.edu;ucsc.edu	37	9	35563221	35563221	+	Silent	SNP	A	G	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	35563221	G	G	35563221	2	3	409	1	0	0	0	0	0	0	0	1	5486	272	10	3		3	FAM166B	9	35563221	Silent	SNP	A	TCGA-BP-5176-01A-01D-1429-08	3	35563221	105650210	59	23690	290	2									
ZNF658	26149	broad.mit.edu	37	9	40772272	40772272	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	40772272	-	-	40772272	7	5	409	1	0	1	0	1	0	0	0	0	18081	1606	56	0	180	0	ZNF658	9	40772272	Frame_Shift_Del	DEL	T	TCGA-BP-5176-01A-01D-1429-08	5209051	40772272	100441159	60	23691											
C9orf125	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	104238257	104238257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	104238257	T	A	104238257	3	1	409	1	0	0	0	0	1	0	0	0	2456	1609	56	5	97	5	C9orf125	9	104238257	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	63465985	104238257	36975174	61	23692											
SEC16A	9919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139360547	139360547	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	139360547	G	T	139360547	4	4	409	1	0	0	0	0	0	1	0	0	13999	1140	40	4	3003	4	SEC16A	9	139360547	Nonsense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	35122290	139360547	1852884	62	23693											
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	16979763	16979763	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	16979763	A	C	16979763	3	2	409	1	0	0	0	0	1	0	0	0	4053	242	9	5	5233	5	CUBN	10	16979763	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08		16979763	118554984	63	23694											
NSUN6	221078	hgsc.bcm.edu;ucsc.edu	37	10	18874976	18874977	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	18874977	-	T	18874976	7	5	409	1	0	1	1	0	0	0	0	0	10689	333	12	0	601	0	NSUN6	10	18874976	Frame_Shift_Ins	INS	-	TCGA-BP-5176-01A-01D-1429-08	1895213	18874976	116659771	64	23695											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61829377	61829377	+	Silent	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	61829377	T	C	61829377	2	2	409	1	0	0	0	0	0	0	0	1	622	1422	50	3		3	ANK3	10	61829377	Silent	SNP	T	TCGA-BP-5176-01A-01D-1429-08	42954401	61829377	73705370	65	23696											
GOT1	2805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	101163595	101163595	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	101163595	G	A	101163595	4	1	409	1	0	0	0	0	0	1	0	0	6586	1299	45	2	578	2	GOT1	10	101163595	Nonsense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	39334218	101163595	34371152	66	23697											
TH	7054	hgsc.bcm.edu;ucsc.edu	37	11	2185540	2185540	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	2185540	G	-	2185540	7	5	409	1	0	1	0	1	0	0	0	0	15850	1357	47	0	80	0	TH	11	2185540	Frame_Shift_Del	DEL	G	TCGA-BP-5176-01A-01D-1429-08		2185540	132820976	67	23698											
STK33	65975	hgsc.bcm.edu	37	11	8414087	8414088	+	In_Frame_Ins	INS	-	-	CCAGAA	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	CCAGAA	8414088	-	CCAGAA	8414087	7	5	409	1	0	1	1	0	0	0	0	0	15312	1074	38	0	33	0	STK33	11	8414087	In_Frame_Ins	INS	-	TCGA-BP-5176-01A-01D-1429-08	6228547	8414087	126592429	68	23699											
C11orf46	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	30352900	30352900	+	Silent	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	30352900	G	A	30352900	2	1	409	1	0	0	0	0	0	0	0	1	1645	933	33	2		2	C11orf46	11	30352900	Silent	SNP	G	TCGA-BP-5176-01A-01D-1429-08	21938813	30352900	104653616	69	23700											
NPAS4	266743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66191067	66191067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	66191067	T	G	66191067	3	3	409	1	0	0	0	0	1	0	0	0	10572	1493	52	5	849	5	NPAS4	11	66191067	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	35838167	66191067	68815449	70	23701											
RNF169	254225	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	74546695	74546695	+	Silent	SNP	A	A	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	74546695	A	T	74546695	2	4	409	1	0	0	0	0	0	0	0	1	13473	378	14	5		5	RNF169	11	74546695	Silent	SNP	A	TCGA-BP-5176-01A-01D-1429-08	8355628	74546695	60459821	71	23702											
DLAT	1737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111930750	111930750	+	Silent	SNP	C	C	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	111930750	C	G	111930750	2	3	409	1	0	0	0	0	0	0	0	1	4551	581	21	4		4	DLAT	11	111930750	Silent	SNP	C	TCGA-BP-5176-01A-01D-1429-08	37384055	111930750	23075766	72	23703											
SORL1	6653	hgsc.bcm.edu	37	11	121416109	121416109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	121416109	C	A	121416109	3	1	409	1	0	0	0	0	1	0	0	0	14947	564	20	4	2076	4	SORL1	11	121416109	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	9485359	121416109	13590407	73	23704											
OR8B12	219858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124413531	124413531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	124413531	G	A	124413531	3	1	409	1	0	0	0	0	1	0	0	0	11233	942	33	2	914	2	OR8B12	11	124413531	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	2997422	124413531	10592985	74	23705											
NCAPD3	23310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	134029917	134029917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	134029917	T	C	134029917	3	2	409	1	0	0	0	0	1	0	0	0	10213	1841	64	3	787	3	NCAPD3	11	134029917	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	9616386	134029917	976599	75	23706											
ETNK1	55500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	22812052	22812052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	22812052	T	A	22812052	3	1	409	1	0	0	0	0	1	0	0	0	5275	1493	52	5	896	5	ETNK1	12	22812052	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08		22812052	111039843	76	23707											
FAM113B	0	broad.mit.edu;hgsc.bcm.edu	37	12	47629733	47629733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	47629733	C	A	47629733	3	1	409	1	0	0	0	0	1	0	0	0	5406	855	30	4	889	4	FAM113B	12	47629733	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	24817681	47629733	86222162	77	23708											
LRP1	4035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57589705	57589705	+	Missense_Mutation	SNP	C	C	A	rs148336699	alternate_allele	TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	57589705	C	A	57589705	3	1	409	1	0	0	0	0	1	0	0	0	8958	652	23	4	8834	4	LRP1	12	57589705	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	9959972	57589705	76262190	78	23709											
NUDT4	11163	broad.mit.edu;hgsc.bcm.edu	37	12	93793101	93793101	+	Silent	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	93793101	T	C	93793101	2	2	409	1	0	0	0	0	0	0	0	1	10748	1461	51	3		3	NUDT4	12	93793101	Silent	SNP	T	TCGA-BP-5176-01A-01D-1429-08	36203396	93793101	40058794	79	23710											
TPCN1	53373	broad.mit.edu;ucsc.edu	37	12	113727990	113727990	+	Silent	SNP	C	A	A	rs150639944	alternate_allele	TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	113727990	A	A	113727990	2	1	409	1	0	0	0	0	0	0	0	1	16407	639	23	4		4	TPCN1	12	113727990	Silent	SNP	C	TCGA-BP-5176-01A-01D-1429-08	19934889	113727990	20123905	80	23711											
NOS1	4842	broad.mit.edu;ucsc.edu	37	12	117665305	117665305	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	117665305	G	G	117665305	3	3	409	1	0	0	0	0	1	0	0	0	10548	1580	55	5	785	5	NOS1	12	117665305	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	3937315	117665305	16186590	81	23712											
RNF10	9921	broad.mit.edu;ucsc.edu	37	12	121013684	121013684	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	121013684	C	C	121013684	3	2	409	1	0	0	0	0	1	0	0	0	13435	1783	62	3	2352	3	RNF10	12	121013684	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	3348379	121013684	12838211	82	23713											
AKAP11	11215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	42891796	42891796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	42891796	A	T	42891796	3	4	409	1	0	0	0	0	1	0	0	0	447	217	8	5	5575	5	AKAP11	13	42891796	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08		42891796	72278082	83	23714											
PRMT5	10419	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23393369	23393369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	23393369	T	A	23393369	3	1	409	1	0	0	0	0	1	0	0	0	12549	1783	62	5	714	5	PRMT5	14	23393369	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08		23393369	83956171	84	23715											
AKAP6	9472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	33292170	33292170	+	Silent	SNP	G	G	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	33292170	G	C	33292170	2	2	409	1	0	0	0	0	0	0	0	1	455	1132	40	4		4	AKAP6	14	33292170	Silent	SNP	G	TCGA-BP-5176-01A-01D-1429-08	9898801	33292170	74057370	85	23716											
RALGAPA1	253959	hgsc.bcm.edu	37	14	36096435	36096436	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	36096436	-	T	36096435	7	5	409	1	0	1	1	0	0	0	0	0	13026	922	32	0	1095	0	RALGAPA1	14	36096435	Frame_Shift_Ins	INS	-	TCGA-BP-5176-01A-01D-1429-08	2804265	36096435	71253105	86	23717											
ATP5S	27109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	50790719	50790719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	50790719	G	A	50790719	3	1	409	1	0	0	0	0	1	0	0	0	1163	1290	45	2	482	2	ATP5S	14	50790719	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	14694284	50790719	56558821	87	23718											
OTX2	5015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	57271023	57271023	+	Silent	SNP	C	C	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	57271023	C	A	57271023	2	1	409	1	0	0	0	0	0	0	0	1	11328	523	19	4		4	OTX2	14	57271023	Silent	SNP	C	TCGA-BP-5176-01A-01D-1429-08	6480304	57271023	50078517	88	23719											
DICER1	23405	broad.mit.edu;ucsc.edu	37	14	95557550	95557550	+	Silent	SNP	C	A	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	95557550	A	A	95557550	2	1	409	1	0	0	0	0	0	0	0	1	4523	726	26	4		4	DICER1	14	95557550	Silent	SNP	C	TCGA-BP-5176-01A-01D-1429-08	38286527	95557550	11791990	89	23720											
CDC42BPB	9578	hgsc.bcm.edu;ucsc.edu	37	14	103416228	103416229	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	103416229	GT	-	103416228	7	5	409	1	0	1	0	1	0	0	0	0	3075	1145	40	0	1860	0	CDC42BPB	14	103416228	Frame_Shift_Del	DEL	GT	TCGA-BP-5176-01A-01D-1429-08	7858678	103416228	3933312	90	23721											
PPP1R13B	23368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	104208276	104208276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	104208276	G	A	104208276	3	1	409	1	0	0	0	0	1	0	0	0	12367	971	34	2	1627	2	PPP1R13B	14	104208276	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	792048	104208276	3141264	91	23722											
ACTC1	70	broad.mit.edu;hgsc.bcm.edu	37	15	35085454	35085454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	35085454	C	T	35085454	3	4	409	1	0	0	0	0	1	0	0	0	195	536	19	1	707	1	ACTC1	15	35085454	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08		35085454	67445938	92	23723											
INO80	54617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41364204	41364204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	41364204	G	T	41364204	3	4	409	1	0	0	0	0	1	0	0	0	7753	1319	46	4	3322	4	INO80	15	41364204	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	6278750	41364204	61167188	93	23724											
SLTM	79811	hgsc.bcm.edu;ucsc.edu	37	15	59205785	59205786	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	59205786	TA	-	59205785	7	5	409	1	0	1	0	1	0	0	0	0	14767	1635	57	0	2750	0	SLTM	15	59205785	Frame_Shift_Del	DEL	TA	TCGA-BP-5176-01A-01D-1429-08	17841581	59205785	43325607	94	23725											
HERC1	8925	broad.mit.edu	37	15	63944712	63944712	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	63944712	G	G	63944712	3	3	409	1	0	0	0	0	1	0	0	0	7064	1841	64	5	4374	5	HERC1	15	63944712	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	4738927	63944712	38586680	95	23726											
USP7	7874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	9010986	9010986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	9010986	C	T	9010986	3	4	409	1	0	0	0	0	1	0	0	0	17100	855	30	2	2660	2	USP7	16	9010986	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08		9010986	81343767	96	23727											
ACSM1	116285	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	20651789	20651789	+	Silent	SNP	C	C	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	20651789	C	T	20651789	2	4	409	1	0	0	0	0	0	0	0	1	182	639	23	1		1	ACSM1	16	20651789	Silent	SNP	C	TCGA-BP-5176-01A-01D-1429-08	11640803	20651789	69702964	97	23728											
DNAH3	55567	hgsc.bcm.edu;ucsc.edu	37	16	20998759	20998759	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	20998759	T	-	20998759	7	5	409	1	0	1	0	1	0	0	0	0	4605	1490	52	0	5519	0	DNAH3	16	20998759	Frame_Shift_Del	DEL	T	TCGA-BP-5176-01A-01D-1429-08	346970	20998759	69355994	98	23729											
CD19	930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28944420	28944420	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	28944420	C	T	28944420	4	4	409	1	0	0	0	0	0	1	0	0	2975	595	21	2	554	2	CD19	16	28944420	Nonsense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	7945661	28944420	61410333	99	23730											
ZNF423	23090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	49557609	49557609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	49557609	C	A	49557609	3	1	409	1	0	0	0	0	1	0	0	0	17910	536	19	4	111	4	ZNF423	16	49557609	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	20613189	49557609	40797144	100	23731											
HERPUD1	9709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	56974151	56974151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	56974151	T	C	56974151	3	2	409	1	0	0	0	0	1	0	0	0	7070	1464	51	3	921	3	HERPUD1	16	56974151	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	7416542	56974151	33380602	101	23732											
SLC47A2	146802	broad.mit.edu;hgsc.bcm.edu	37	17	19582221	19582221	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	19582221	T	C	19582221	5	2	409	1	0	0	0	0	0	0	1	0	14661	1594	55	3	225	3	SLC47A2	17	19582221	Splice_Site	SNP	T	TCGA-BP-5176-01A-01D-1429-08		19582221	61612989	102	23733											
MAP2K3	5606	hgsc.bcm.edu	37	17	21207813	21207813	+	Missense_Mutation	SNP	T	T	G	rs74575904	bycluster;byfrequency	TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	21207813	T	G	21207813	3	3	409	1	0	0	0	0	1	0	0	0	9245	1821	63	5	674	5	MAP2K3	17	21207813	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	1625592	21207813	59987397	103	23734											
TP53I13	90313	broad.mit.edu;hgsc.bcm.edu	37	17	27896080	27896080	+	Silent	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	27896080	G	A	27896080	2	1	409	1	0	0	0	0	0	0	0	1	16398	933	33	2		2	TP53I13	17	27896080	Silent	SNP	G	TCGA-BP-5176-01A-01D-1429-08	6688267	27896080	53299130	104	23735											
NF1	4763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29684022	29684022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	29684022	A	G	29684022	3	3	409	1	0	0	0	0	1	0	0	0	10363	363	13	3	8054	3	NF1	17	29684022	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	1787942	29684022	51511188	105	23736											
TMEM92	162461	broad.mit.edu;hgsc.bcm.edu	37	17	48356271	48356271	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	48356271	T	A	48356271	3	1	409	1	0	0	0	0	1	0	0	0	16233	1812	63	5	294	5	TMEM92	17	48356271	Missense_Mutation	SNP	T	TCGA-BP-5176-01A-01D-1429-08	18672249	48356271	32838939	106	23737											
SMAD2	4087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	45395769	45395769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	45395769	C	A	45395769	3	1	409	1	0	0	0	0	1	0	0	0	14771	855	30	4	1070	4	SMAD2	18	45395769	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08		45395769	32681479	107	23738											
ALPK2	115701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	56204268	56204268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	56204268	A	G	56204268	3	3	409	1	0	0	0	0	1	0	0	0	545	101	4	3	3397	3	ALPK2	18	56204268	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	10808499	56204268	21872980	108	23739											
SOCS6	9306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	67992983	67992983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	67992983	C	T	67992983	3	4	409	1	0	0	0	0	1	0	0	0	14931	838	29	2	1081	2	SOCS6	18	67992983	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	11788715	67992983	10084265	109	23740											
FAM69C	125704	hgsc.bcm.edu;ucsc.edu	37	18	72109246	72109246	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	72109246	A	-	72109246	7	5	409	1	0	1	0	1	0	0	0	0	5611	246	9	0	285	0	FAM69C	18	72109246	Frame_Shift_Del	DEL	A	TCGA-BP-5176-01A-01D-1429-08	4116263	72109246	5968002	110	23741											
ZNF407	55628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	72346444	72346444	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	72346444	A	C	72346444	3	2	409	1	0	0	0	0	1	0	0	0	17899	362	13	5	3471	5	ZNF407	18	72346444	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	237198	72346444	5730804	111	23742											
ZFR2	23217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3813874	3813874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	3813874	T	-	3813874	7	5	409	1	0	1	0	1	0	0	0	0	17672	1580	55	0	657	0	ZFR2	19	3813874	Frame_Shift_Del	DEL	T	TCGA-BP-5176-01A-01D-1429-08		3813874	55315109	112	23743											
DNAJB1	3337	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14627690	14627690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	C	14627690	A	C	14627690	3	2	409	1	0	0	0	0	1	0	0	0	4617	101	4	5	650	5	DNAJB1	19	14627690	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	10813816	14627690	44501293	113	23744											
SYDE1	85360	hgsc.bcm.edu;ucsc.edu	37	19	15224541	15224561	+	In_Frame_Del	DEL	GGGCGGGACTTCCTGCCCTGT	GGGCGGGACTTCCTGCCCTGT	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	GGGCGGGACTTCCTGCCCTGT	GGGCGGGACTTCCTGCCCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	15224561	GGGCGGGACTTCCTGCCCTGT	-	15224541	7	5	409	1	0	1	0	1	0	0	0	0	15447	1116	39	0	2005	0	SYDE1	19	15224541	In_Frame_Del	DEL	GGGCGGGACTTCCTGCCCTGT	TCGA-BP-5176-01A-01D-1429-08	596851	15224541	43904442	114	23745											
CDS2	8760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	5154171	5154171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	5154171	G	T	5154171	3	4	409	1	0	0	0	0	1	0	0	0	3180	1020	36	4	66	4	CDS2	20	5154171	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08		5154171	57871349	115	23746											
SLC12A5	57468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44684805	44684805	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	44684805	A	T	44684805	3	4	409	1	0	0	0	0	1	0	0	0	14399	333	12	5	3015	5	SLC12A5	20	44684805	Missense_Mutation	SNP	A	TCGA-BP-5176-01A-01D-1429-08	39530634	44684805	18340715	116	23747											
PPP1R3D	5509	broad.mit.edu;hgsc.bcm.edu	37	20	58514505	58514505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	58514505	G	A	58514505	3	1	409	1	0	0	0	0	1	0	0	0	12384	1116	39	1	421	1	PPP1R3D	20	58514505	Missense_Mutation	SNP	G	TCGA-BP-5176-01A-01D-1429-08	13829700	58514505	4511015	117	23748											
GABPA	2551	broad.mit.edu	37	21	27141472	27141472	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	A	27141472	A	A	27141472	3	1	409	1	0	0	0	0	1	0	0	0	6164	594	21	4	1328	4	GABPA	21	27141472	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08		27141472	20988423	118	23749											
IFNAR1	3454	broad.mit.edu;hgsc.bcm.edu	37	21	34721421	34721421	+	Silent	SNP	A	A	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	34721421	A	T	34721421	2	4	409	1	0	0	0	0	0	0	0	1	7551	233	9	5		5	IFNAR1	21	34721421	Silent	SNP	A	TCGA-BP-5176-01A-01D-1429-08	7579949	34721421	13408474	119	23750											
CABIN1	23523	broad.mit.edu;hgsc.bcm.edu	37	22	24451598	24451598	+	Silent	SNP	C	C	T	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	T	24451598	C	T	24451598	2	4	409	1	0	0	0	0	0	0	0	1	2530	912	32	2		2	CABIN1	22	24451598	Silent	SNP	C	TCGA-BP-5176-01A-01D-1429-08		24451598	26852968	120	23751											
SFI1	9814	hgsc.bcm.edu;ucsc.edu	37	22	31927108	31927108	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	31927108	A	-	31927108	7	5	409	1	0	1	0	1	0	0	0	0	14169	363	13	0	341	0	SFI1	22	31927108	Frame_Shift_Del	DEL	A	TCGA-BP-5176-01A-01D-1429-08	7475510	31927108	19377458	121	23752											
ASMTL	8623	hgsc.bcm.edu	37	X	1522164	1522164	+	In_Frame_Del	DEL	A	A	-	rs113329185		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	1522164	A	-	1522164	7	5	409	1	0	1	0	1	0	0	0	0	1046	201	7	0	5	0	ASMTL	23	1522164	In_Frame_Del	DEL	A	TCGA-BP-5176-01A-01D-1429-08		1522164	153748396	122	23753											
DMD	1756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	31792262	31792262	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	31792262	C	G	31792262	3	3	409	1	0	0	0	0	1	0	0	0	4582	864	30	4	3964	4	DMD	23	31792262	Missense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	30270098	31792262	123478298	123	23754											
TBC1D8B	54885	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	106109183	106109183	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	G	106109183	C	G	106109183	4	3	409	1	0	0	0	0	0	1	0	0	15638	838	29	4	2710	4	TBC1D8B	23	106109183	Nonsense_Mutation	SNP	C	TCGA-BP-5176-01A-01D-1429-08	74316921	106109183	49161377	124	23755											
ODZ1	0	hgsc.bcm.edu;ucsc.edu	37	X	124097394	124097394	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5176-01A-01D-1429-08	TCGA-BP-5176-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	607eb48b-1647-4e35-ac60-f6c50341e304	b4effa58-b677-4f97-9653-38ca864a9114	-	124097394	G	-	124097394	7	5	409	1	0	1	0	1	0	0	0	0	10841	942	33	0	8117	0	ODZ1	23	124097394	Frame_Shift_Del	DEL	G	TCGA-BP-5176-01A-01D-1429-08	17988211	124097394	31173166	125	23756											
PTCHD2	57540	broad.mit.edu;ucsc.edu	37	1	11579432	11579432	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	11579432	A	A	11579432	3	1	410	1	0	0	0	0	1	0	0	0	12743	1116	39	1	1936	1	PTCHD2	1	11579432	Missense_Mutation	SNP	G	TCGA-BP-5177-01A-01D-1429-08		11579432	237671189	1	23757											
ANKRD13C	81573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	70766485	70766485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	70766485	C	A	70766485	3	1	410	1	0	0	0	0	1	0	0	0	643	913	32	4	770	4	ANKRD13C	1	70766485	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08	59187053	70766485	178484136	2	23758											
CLCA2	9635	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	86913358	86913358	+	Silent	SNP	T	T	C	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	C	86913358	T	C	86913358	2	2	410	1	0	0	0	0	0	0	0	1	3460	1461	51	3		3	CLCA2	1	86913358	Silent	SNP	T	TCGA-BP-5177-01A-01D-1429-08	16146873	86913358	162337263	3	23759											
RBM8A	9939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	145508564	145508564	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	C	145508564	A	C	145508564	3	2	410	1	0	0	0	0	1	0	0	0	13159	101	4	5	309	5	RBM8A	1	145508564	Missense_Mutation	SNP	A	TCGA-BP-5177-01A-01D-1429-08	58595206	145508564	103742057	4	23760											
KCNN3	3782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154705482	154705482	+	Silent	SNP	G	G	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	154705482	G	A	154705482	2	1	410	1	0	0	0	0	0	0	0	1	8087	1280	45	2		2	KCNN3	1	154705482	Silent	SNP	G	TCGA-BP-5177-01A-01D-1429-08	9196918	154705482	94545139	5	23761											
RFWD2	64326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	176055007	176055007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	C	176055007	T	C	176055007	3	2	410	1	0	0	0	0	1	0	0	0	13273	1406	49	3	1193	3	RFWD2	1	176055007	Missense_Mutation	SNP	T	TCGA-BP-5177-01A-01D-1429-08	21349525	176055007	73195614	6	23762											
NAV1	89796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201751584	201751584	+	Silent	SNP	C	C	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	201751584	C	T	201751584	2	4	410	1	0	0	0	0	0	0	0	1	10190	796	28	2		2	NAV1	1	201751584	Silent	SNP	C	TCGA-BP-5177-01A-01D-1429-08	25696577	201751584	47499037	7	23763											
NCKAP5	344148	broad.mit.edu;ucsc.edu	37	2	133540492	133540492	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	133540492	A	A	133540492	3	1	410	1	0	0	0	0	1	0	0	0	10230	1116	39	1	1865	1	NCKAP5	2	133540492	Missense_Mutation	SNP	G	TCGA-BP-5177-01A-01D-1429-08		133540492	109658881	8	23764											
HOXD4	3233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	177016412	177016412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	G	177016412	C	G	177016412	3	3	410	1	0	0	0	0	1	0	0	0	7331	854	30	4	53	4	HOXD4	2	177016412	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08	43475920	177016412	66182961	9	23765											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188246	10188246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	10188246	T	A	10188246	3	1	410	1	0	0	0	0	1	0	0	0	17174	1725	60	5	395	5	VHL	3	10188246	Missense_Mutation	SNP	T	TCGA-BP-5177-01A-01D-1429-08		10188246	187834184	10	23766											
SKIV2L	6499	broad.mit.edu;hgsc.bcm.edu	37	6	31928014	31928014	+	Missense_Mutation	SNP	C	C	T	rs146717555		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	31928014	C	T	31928014	3	4	410	1	0	0	0	0	1	0	0	0	14372	536	19	1	268	1	SKIV2L	6	31928014	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08		31928014	139187053	11	23767											
AIM1	202	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	106968602	106968602	+	Silent	SNP	G	G	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	106968602	G	A	106968602	2	1	410	1	0	0	0	0	0	0	0	1	430	1103	39	1		1	AIM1	6	106968602	Silent	SNP	G	TCGA-BP-5177-01A-01D-1429-08	75040588	106968602	64146465	12	23768											
KIAA1244	57221	hgsc.bcm.edu;ucsc.edu	37	6	138601236	138601236	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	-	138601236	T	-	138601236	7	5	410	1	0	1	0	1	0	0	0	0	8224	1609	56	0	2450	0	KIAA1244	6	138601236	Frame_Shift_Del	DEL	T	TCGA-BP-5177-01A-01D-1429-08	31632634	138601236	32513831	13	23769											
DNAH11	8701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	21639591	21639591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	21639591	C	T	21639591	3	4	410	1	0	0	0	0	1	0	0	0	4601	739	26	2	2912	2	DNAH11	7	21639591	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08		21639591	137499072	14	23770											
KCTD7	154881	hgsc.bcm.edu;ucsc.edu	37	7	66103415	66103415	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	-	66103415	A	-	66103415	7	5	410	1	0	1	0	1	0	0	0	0	8121	131	5	0	500	0	KCTD7	7	66103415	Frame_Shift_Del	DEL	A	TCGA-BP-5177-01A-01D-1429-08	44463824	66103415	93035248	15	23771											
NOL8	55035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95077535	95077535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	95077535	C	T	95077535	3	4	410	1	0	0	0	0	1	0	0	0	10534	913	32	2	2175	2	NOL8	9	95077535	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08		95077535	46135896	16	23772											
BMS1	9790	hgsc.bcm.edu	37	10	43315792	43315792	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	-	43315792	T	-	43315792	7	5	410	1	0	1	0	1	0	0	0	0	1472	1493	52	0	2747	0	BMS1	10	43315792	Frame_Shift_Del	DEL	T	TCGA-BP-5177-01A-01D-1429-08		43315792	92218955	17	23773											
EPS8L2	64787	broad.mit.edu	37	11	726936	726936	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	C	726936	C	C	726936	3	2	410	1	0	0	0	0	1	0	0	0	5198	1290	45	4	2181	4	EPS8L2	11	726936	Missense_Mutation	SNP	G	TCGA-BP-5177-01A-01D-1429-08		726936	134279580	18	23774											
GNG3	2785	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62475843	62475843	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	62475843	G	T	62475843	4	4	410	1	0	0	0	0	0	1	0	0	6535	1291	45	4	78	4	GNG3	11	62475843	Nonsense_Mutation	SNP	G	TCGA-BP-5177-01A-01D-1429-08	61748907	62475843	72530673	19	23775											
NXPH4	11247	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57619419	57619419	+	Silent	SNP	G	G	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	57619419	G	A	57619419	2	1	410	1	0	0	0	0	0	0	0	1	10800	962	34	2		2	NXPH4	12	57619419	Silent	SNP	G	TCGA-BP-5177-01A-01D-1429-08		57619419	76232476	20	23776											
SRGAP1	57522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	64377783	64377783	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	64377783	C	T	64377783	4	4	410	1	0	0	0	0	0	1	0	0	15157	760	27	1	130	1	SRGAP1	12	64377783	Nonsense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08	6758364	64377783	69474112	21	23777											
ADPRHL1	113622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	114107552	114107552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	G	114107552	C	G	114107552	3	3	410	1	0	0	0	0	1	0	0	0	332	680	24	4	891	4	ADPRHL1	13	114107552	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08		114107552	1062326	22	23778											
SMOC1	64093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	70459140	70459140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	70459140	G	A	70459140	3	1	410	1	0	0	0	0	1	0	0	0	14814	1232	43	2	555	2	SMOC1	14	70459140	Missense_Mutation	SNP	G	TCGA-BP-5177-01A-01D-1429-08		70459140	36890400	23	23779											
UBR7	55148	hgsc.bcm.edu;ucsc.edu	37	14	93686659	93686659	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	-	93686659	A	-	93686659	7	5	410	1	0	1	0	1	0	0	0	0	16918	246	9	0	1059	0	UBR7	14	93686659	Frame_Shift_Del	DEL	A	TCGA-BP-5177-01A-01D-1429-08	23227519	93686659	13662881	24	23780											
TECPR2	9895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	102901086	102901086	+	Silent	SNP	C	C	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	102901086	C	T	102901086	2	4	410	1	0	0	0	0	0	0	0	1	15756	842	30	2		2	TECPR2	14	102901086	Silent	SNP	C	TCGA-BP-5177-01A-01D-1429-08	9214427	102901086	4448454	25	23781											
MAPKBP1	23005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42108803	42108803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	42108803	C	A	42108803	3	1	410	1	0	0	0	0	1	0	0	0	9299	594	21	4	1608	4	MAPKBP1	15	42108803	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08		42108803	60422589	26	23782											
PLA2G4F	255189	broad.mit.edu;hgsc.bcm.edu	37	15	42446347	42446347	+	Silent	SNP	G	G	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	42446347	G	A	42446347	2	1	410	1	0	0	0	0	0	0	0	1	12013	1252	44	2		2	PLA2G4F	15	42446347	Silent	SNP	G	TCGA-BP-5177-01A-01D-1429-08	337544	42446347	60085045	27	23783											
TBC1D24	57465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2546654	2546654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	G	2546654	A	G	2546654	3	3	410	1	0	0	0	0	1	0	0	0	15626	333	12	3	507	3	TBC1D24	16	2546654	Missense_Mutation	SNP	A	TCGA-BP-5177-01A-01D-1429-08		2546654	87808099	28	23784											
TOB1	10140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48941286	48941286	+	Silent	SNP	T	T	C	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	C	48941286	T	C	48941286	2	2	410	1	0	0	0	0	0	0	0	1	16359	1722	60	3		3	TOB1	17	48941286	Silent	SNP	T	TCGA-BP-5177-01A-01D-1429-08		48941286	32253924	29	23785											
ABCA8	10351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	66881449	66881449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	G	66881449	A	G	66881449	3	3	410	1	0	0	0	0	1	0	0	0	38	391	14	3	1484	3	ABCA8	17	66881449	Missense_Mutation	SNP	A	TCGA-BP-5177-01A-01D-1429-08	17940163	66881449	14313761	30	23786											
CABLES1	91768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	20716478	20716478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	20716478	C	T	20716478	3	4	410	1	0	0	0	0	1	0	0	0	2531	739	26	2	754	2	CABLES1	18	20716478	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08		20716478	57360770	31	23787											
GALNT1	2589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	33272259	33272259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	33272259	C	A	33272259	3	1	410	1	0	0	0	0	1	0	0	0	6214	594	21	4	1304	4	GALNT1	18	33272259	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08	12555781	33272259	44804989	32	23788											
TBXA2R	6915	broad.mit.edu	37	19	3600380	3600380	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	3600380	T	T	3600380	3	4	410	1	0	0	0	0	1	0	0	0	15675	536	19	1	1031	1	TBXA2R	19	3600380	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08		3600380	55528603	33	23789											
TIMM44	10469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7999040	7999040	+	Silent	SNP	C	C	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	7999040	C	T	7999040	2	4	410	1	0	0	0	0	0	0	0	1	15924	639	23	1		1	TIMM44	19	7999040	Silent	SNP	C	TCGA-BP-5177-01A-01D-1429-08	4398660	7999040	51129943	34	23790											
NCAN	1463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19329874	19329874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	19329874	G	T	19329874	3	4	410	1	0	0	0	0	1	0	0	0	10211	1116	39	4	230	4	NCAN	19	19329874	Missense_Mutation	SNP	G	TCGA-BP-5177-01A-01D-1429-08	11330834	19329874	39799109	35	23791											
TSSK6	83983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19625999	19625999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	19625999	C	T	19625999	3	4	410	1	0	0	0	0	1	0	0	0	16684	893	31	1	587	1	TSSK6	19	19625999	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08	296125	19625999	39502984	36	23792											
SPIB	6689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50926877	50926877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	50926877	G	A	50926877	3	1	410	1	0	0	0	0	1	0	0	0	15062	1203	42	2	373	2	SPIB	19	50926877	Missense_Mutation	SNP	G	TCGA-BP-5177-01A-01D-1429-08	31300878	50926877	8202106	37	23793											
ZNF480	147657	broad.mit.edu;hgsc.bcm.edu	37	19	52825621	52825621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	A	52825621	G	A	52825621	3	1	410	1	0	0	0	0	1	0	0	0	17947	1377	48	2	1132	2	ZNF480	19	52825621	Missense_Mutation	SNP	G	TCGA-BP-5177-01A-01D-1429-08	1898744	52825621	6303362	38	23794											
ZNF304	57343	hgsc.bcm.edu;ucsc.edu	37	19	57865095	57865095	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	-	57865095	T	-	57865095	7	5	410	1	0	1	0	1	0	0	0	0	17845	1722	60	0	42	0	ZNF304	19	57865095	Frame_Shift_Del	DEL	T	TCGA-BP-5177-01A-01D-1429-08	5039474	57865095	1263888	39	23795											
OGFR	11054	hgsc.bcm.edu	37	20	61444720	61444720	+	Missense_Mutation	SNP	A	A	C	rs79127826		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	C	61444720	A	C	61444720	3	2	410	1	0	0	0	0	1	0	0	0	10850	188	7	5	1779	5	OGFR	20	61444720	Missense_Mutation	SNP	A	TCGA-BP-5177-01A-01D-1429-08		61444720	1580800	40	23796											
WNT7B	7477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	46319160	46319160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	T	46319160	C	T	46319160	3	4	410	1	0	0	0	0	1	0	0	0	17407	710	25	2	427	2	WNT7B	22	46319160	Missense_Mutation	SNP	C	TCGA-BP-5177-01A-01D-1429-08		46319160	4985406	41	23797											
CXorf26	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	75397644	75397644	+	Silent	SNP	A	A	G	novel		TCGA-BP-5177-01A-01D-1429-08	TCGA-BP-5177-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae	5b505dca-8443-4884-90a8-4514479783f8	G	75397644	A	G	75397644	2	3	410	1	0	0	0	0	0	0	0	1	4106	69	3	3		3	CXorf26	23	75397644	Silent	SNP	A	TCGA-BP-5177-01A-01D-1429-08		75397644	79872916	42	23798											
TINAGL1	64129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32042883	32042883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	32042883	G	A	32042883	3	1	411	1	0	0	0	0	1	0	0	0	15934	1203	42	2	136	2	TINAGL1	1	32042883	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08		32042883	217207738	1	23799											
KHDRBS1	10657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32504213	32504213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	32504213	A	T	32504213	3	4	411	1	0	0	0	0	1	0	0	0	8153	304	11	5	1194	5	KHDRBS1	1	32504213	Missense_Mutation	SNP	A	TCGA-BP-5178-01A-01D-1429-08	461330	32504213	216746408	2	23800											
COPA	1314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160302290	160302290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	C	160302290	G	C	160302290	3	2	411	1	0	0	0	0	1	0	0	0	3729	1020	36	4	3369	4	COPA	1	160302290	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	127798077	160302290	88948331	3	23801											
KIF26B	55083	broad.mit.edu	37	1	245848753	245848753	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	245848753	A	A	245848753	3	1	411	1	0	0	0	0	1	0	0	0	8302	1087	38	1	2514	1	KIF26B	1	245848753	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	85546463	245848753	3401868	4	23802											
GPR148	344561	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	131487497	131487497	+	Missense_Mutation	SNP	G	G	T	rs113110453	byfrequency;alternate_allele	TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	131487497	G	T	131487497	3	4	411	1	0	0	0	0	1	0	0	0	6660	1116	39	4	775	4	GPR148	2	131487497	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08		131487497	111711876	5	23803											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	142238027	142238027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	142238027	G	T	142238027	3	4	411	1	0	0	0	0	1	0	0	0	8962	1174	41	4	13874	4	LRP1B	2	142238027	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	10750530	142238027	100961346	6	23804											
NFE2L2	4780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	178098956	178098956	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	178098956	A	T	178098956	3	4	411	1	0	0	0	0	1	0	0	0	10375	72	3	5	1744	5	NFE2L2	2	178098956	Missense_Mutation	SNP	A	TCGA-BP-5178-01A-01D-1429-08	35860929	178098956	65100417	7	23805											
CPS1	1373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	211473212	211473212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	211473212	C	A	211473212	3	1	411	1	0	0	0	0	1	0	0	0	3825	855	30	4	2416	4	CPS1	2	211473212	Missense_Mutation	SNP	C	TCGA-BP-5178-01A-01D-1429-08	33374256	211473212	31726161	8	23806											
SCG2	7857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	224463615	224463615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	224463615	G	A	224463615	3	1	411	1	0	0	0	0	1	0	0	0	13904	1348	47	2	1471	2	SCG2	2	224463615	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	12990403	224463615	18735758	9	23807											
STT3B	201595	hgsc.bcm.edu	37	3	31659455	31659456	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	31659456	-	G	31659455	7	5	411	1	0	1	1	0	0	0	0	0	15346	179	7	0	1177	0	STT3B	3	31659455	Frame_Shift_Ins	INS	-	TCGA-BP-5178-01A-01D-1429-08		31659455	166362975	10	23808											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47142967	47142967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	47142967	A	G	47142967	3	3	411	1	0	0	0	0	1	0	0	0	14144	420	15	3	2754	3	SETD2	3	47142967	Missense_Mutation	SNP	A	TCGA-BP-5178-01A-01D-1429-08	15483512	47142967	150879463	11	23809											
SENP7	57337	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	101060582	101060582	+	Silent	SNP	C	C	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	101060582	C	A	101060582	2	1	411	1	0	0	0	0	0	0	0	1	14064	697	25	4		4	SENP7	3	101060582	Silent	SNP	C	TCGA-BP-5178-01A-01D-1429-08	53917615	101060582	96961848	12	23810											
TP63	8626	broad.mit.edu;hgsc.bcm.edu	37	3	189586483	189586483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	C	189586483	G	C	189586483	3	2	411	1	0	0	0	0	1	0	0	0	16404	933	33	4	1183	4	TP63	3	189586483	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	88525901	189586483	8435947	13	23811											
SEMA6A	57556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	115803361	115803361	+	Silent	SNP	C	C	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	115803361	C	G	115803361	2	3	411	1	0	0	0	0	0	0	0	1	14052	581	21	4		4	SEMA6A	5	115803361	Silent	SNP	C	TCGA-BP-5178-01A-01D-1429-08		115803361	65111899	14	23812											
DNAJC18	202052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	138749940	138749940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	138749940	G	A	138749940	3	1	411	1	0	0	0	0	1	0	0	0	4639	1319	46	2	106	2	DNAJC18	5	138749940	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	22946579	138749940	42165320	15	23813											
PCDHGA1	56114	broad.mit.edu;hgsc.bcm.edu	37	5	140712520	140712520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	140712520	G	T	140712520	3	4	411	1	0	0	0	0	1	0	0	0	11557	1261	44	4	2271	4	PCDHGA1	5	140712520	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	1962580	140712520	40202740	16	23814											
SLC35B3	51000	hgsc.bcm.edu;ucsc.edu	37	6	8417152	8417152	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	8417152	A	T	8417152	4	4	411	1	0	0	0	0	0	1	0	0	14590	131	5	5	267	5	SLC35B3	6	8417152	Nonsense_Mutation	SNP	A	TCGA-BP-5178-01A-01D-1429-08		8417152	162697915	17	23815											
C2	717	broad.mit.edu;hgsc.bcm.edu	37	6	31912529	31912529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	31912529	C	T	31912529	3	4	411	1	0	0	0	0	1	0	0	0	2076	855	30	2	2067	2	C2	6	31912529	Missense_Mutation	SNP	C	TCGA-BP-5178-01A-01D-1429-08	23495377	31912529	139202538	18	23816											
GRIK2	2898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	102503298	102503298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	102503298	A	G	102503298	3	3	411	1	0	0	0	0	1	0	0	0	6781	101	4	3	2463	3	GRIK2	6	102503298	Missense_Mutation	SNP	A	TCGA-BP-5178-01A-01D-1429-08	70590769	102503298	68611769	19	23817											
ACHE	43	hgsc.bcm.edu;ucsc.edu	37	7	100490365	100490367	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	-	100490367	GTT	-	100490365	7	5	411	1	0	1	0	1	0	0	0	0	141	1136	40	0	848	0	ACHE	7	100490365	In_Frame_Del	DEL	GTT	TCGA-BP-5178-01A-01D-1429-08		100490365	58648298	20	23818											
SMO	6608	broad.mit.edu	37	7	128852025	128852025	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	128852025	G	G	128852025	3	3	411	1	0	0	0	0	1	0	0	0	14813	1635	57	5	2143	5	SMO	7	128852025	Missense_Mutation	SNP	T	TCGA-BP-5178-01A-01D-1429-08	28361660	128852025	30286638	21	23819											
RBM33	155435	broad.mit.edu	37	7	155465597	155465597	+	Silent	SNP	A	T	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	155465597	T	T	155465597	2	4	411	1	0	0	0	0	0	0	0	1	13143	436	16	5		5	RBM33	7	155465597	Silent	SNP	A	TCGA-BP-5178-01A-01D-1429-08	26613572	155465597	3673066	22	23820											
ZFPM2	23414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	106813670	106813670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	106813670	C	A	106813670	3	1	411	1	0	0	0	0	1	0	0	0	17670	507	18	4	1390	4	ZFPM2	8	106813670	Missense_Mutation	SNP	C	TCGA-BP-5178-01A-01D-1429-08		106813670	39550352	23	23821											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110476839	110476839	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	110476839	A	T	110476839	3	4	411	1	0	0	0	0	1	0	0	0	11979	333	12	5	7972	5	PKHD1L1	8	110476839	Missense_Mutation	SNP	A	TCGA-BP-5178-01A-01D-1429-08	3663169	110476839	35887183	24	23822											
ZRANB1	54764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	126670374	126670374	+	Silent	SNP	A	A	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	126670374	A	G	126670374	2	3	411	1	0	0	0	0	0	0	0	1	18234	204	8	3		3	ZRANB1	10	126670374	Silent	SNP	A	TCGA-BP-5178-01A-01D-1429-08		126670374	8864373	25	23823											
UEVLD	55293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18600293	18600293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	18600293	G	T	18600293	3	4	411	1	0	0	0	0	1	0	0	0	16945	1281	45	4	1354	4	UEVLD	11	18600293	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08		18600293	116406223	26	23824											
MS4A3	932	broad.mit.edu;hgsc.bcm.edu	37	11	59834429	59834429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	59834429	G	T	59834429	3	4	411	1	0	0	0	0	1	0	0	0	9868	933	33	4	371	4	MS4A3	11	59834429	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	41234136	59834429	75172087	27	23825											
EHBP1L1	254102	broad.mit.edu	37	11	65346872	65346872	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	65346872	T	T	65346872	3	4	411	1	0	0	0	0	1	0	0	0	4978	507	18	2	233	2	EHBP1L1	11	65346872	Missense_Mutation	SNP	C	TCGA-BP-5178-01A-01D-1429-08	5512443	65346872	69659644	28	23826											
RSF1	51773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	77412660	77412660	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	77412660	T	G	77412660	3	3	411	1	0	0	0	0	1	0	0	0	13712	1838	64	5	2755	5	RSF1	11	77412660	Missense_Mutation	SNP	T	TCGA-BP-5178-01A-01D-1429-08	12065788	77412660	57593856	29	23827											
FOXRED1	55572	broad.mit.edu;hgsc.bcm.edu	37	11	126146919	126146919	+	RNA	SNP	C	C	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	126146919	C	T	126146919	1	4	411	0	1	0	0	0	0	0	0	0	6040	870	30	2		2	FOXRED1	11	126146919	RNA	SNP	C	TCGA-BP-5178-01A-01D-1429-08	48734259	126146919	8859597	30	23828											
FLI1	2313	broad.mit.edu;ucsc.edu	37	11	128680490	128680490	+	Silent	SNP	C	T	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	128680490	T	T	128680490	2	4	411	1	0	0	0	0	0	0	0	1	5931	755	27	1		1	FLI1	11	128680490	Silent	SNP	C	TCGA-BP-5178-01A-01D-1429-08	2533571	128680490	6326026	31	23829											
ARNTL2	56938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	27529304	27529304	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	-	27529304	A	-	27529304	7	5	411	1	0	1	0	1	0	0	0	0	968	363	13	0	324	0	ARNTL2	12	27529304	Frame_Shift_Del	DEL	A	TCGA-BP-5178-01A-01D-1429-08		27529304	106322591	32	23830											
ADAMTS20	80070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	43777521	43777521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	43777521	G	A	43777521	3	1	411	1	0	0	0	0	1	0	0	0	266	1294	45	2	1130	2	ADAMTS20	12	43777521	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	16248217	43777521	90074374	33	23831											
MUCL1	118430	broad.mit.edu	37	12	55250594	55250594	+	Silent	SNP	T	A	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	55250594	A	A	55250594	2	1	411	1	0	0	0	0	0	0	0	1	9989	1567	55	5		5	MUCL1	12	55250594	Silent	SNP	T	TCGA-BP-5178-01A-01D-1429-08	11473073	55250594	78601301	34	23832											
ERCC5	2073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	103520522	103520522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	103520522	G	A	103520522	3	1	411	1	0	0	0	0	1	0	0	0	5218	1001	35	2	2639	2	ERCC5	13	103520522	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08		103520522	11649356	35	23833											
TEP1	7011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	20847178	20847178	+	Silent	SNP	G	G	A	rs138032035		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	20847178	G	A	20847178	2	1	411	1	0	0	0	0	0	0	0	1	15771	1136	40	1		1	TEP1	14	20847178	Silent	SNP	G	TCGA-BP-5178-01A-01D-1429-08		20847178	86502362	36	23834											
C14orf101	54916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	57070637	57070637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	57070637	A	G	57070637	3	3	411	1	0	0	0	0	1	0	0	0	1736	101	4	3	463	3	C14orf101	14	57070637	Missense_Mutation	SNP	A	TCGA-BP-5178-01A-01D-1429-08	36223459	57070637	50278903	37	23835											
C15orf60	283677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	73843391	73843391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	73843391	C	T	73843391	3	4	411	1	0	0	0	0	1	0	0	0	1810	681	24	2	460	2	C15orf60	15	73843391	Missense_Mutation	SNP	C	TCGA-BP-5178-01A-01D-1429-08		73843391	28688001	38	23836											
ADAMTS17	170691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	100594117	100594117	+	Silent	SNP	T	T	C	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	C	100594117	T	C	100594117	2	2	411	1	0	0	0	0	0	0	0	1	262	1625	57	3		3	ADAMTS17	15	100594117	Silent	SNP	T	TCGA-BP-5178-01A-01D-1429-08	26750726	100594117	1937275	39	23837											
PDXDC1	23042	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15126793	15126793	+	Silent	SNP	G	G	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	15126793	G	T	15126793	2	4	411	1	0	0	0	0	0	0	0	1	11703	1277	45	4		4	PDXDC1	16	15126793	Silent	SNP	G	TCGA-BP-5178-01A-01D-1429-08		15126793	75227960	40	23838											
ZNF747	65988	broad.mit.edu	37	16	30545836	30545836	+	Silent	SNP	C	A	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	30545836	A	A	30545836	2	1	411	1	0	0	0	0	0	0	0	1	18142	726	26	4		4	ZNF747	16	30545836	Silent	SNP	C	TCGA-BP-5178-01A-01D-1429-08	15419043	30545836	59808917	41	23839											
SLC9A5	6553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67290936	67290936	+	Silent	SNP	C	C	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	67290936	C	T	67290936	2	4	411	1	0	0	0	0	0	0	0	1	14730	564	20	2		2	SLC9A5	16	67290936	Silent	SNP	C	TCGA-BP-5178-01A-01D-1429-08	36745100	67290936	23063817	42	23840											
MON1B	22879	hgsc.bcm.edu;ucsc.edu	37	16	77228407	77228409	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	-	77228409	CCT	-	77228407	7	5	411	1	0	1	0	1	0	0	0	0	9706	506	18	0	661	0	MON1B	16	77228407	In_Frame_Del	DEL	CCT	TCGA-BP-5178-01A-01D-1429-08	9937471	77228407	13126346	43	23841											
ZNF207	7756	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30692370	30692370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	30692370	G	A	30692370	3	1	411	1	0	0	0	0	1	0	0	0	17777	1145	40	1	722	1	ZNF207	17	30692370	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08		30692370	50502840	44	23842											
TOM1L1	10040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	53014035	53014035	+	Silent	SNP	T	T	C	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	C	53014035	T	C	53014035	2	2	411	1	0	0	0	0	0	0	0	1	16364	1838	64	3		3	TOM1L1	17	53014035	Silent	SNP	T	TCGA-BP-5178-01A-01D-1429-08	22321665	53014035	28181175	45	23843											
EPX	8288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56277703	56277703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	56277703	G	A	56277703	3	1	411	1	0	0	0	0	1	0	0	0	5202	1232	43	2	1693	2	EPX	17	56277703	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	3263668	56277703	24917507	46	23844											
AZI1	22994	broad.mit.edu;hgsc.bcm.edu	37	17	79166553	79166553	+	Silent	SNP	C	C	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	79166553	C	T	79166553	2	4	411	1	0	0	0	0	0	0	0	1	1240	581	21	2		2	AZI1	17	79166553	Silent	SNP	C	TCGA-BP-5178-01A-01D-1429-08	22888850	79166553	2028657	47	23845											
B3GNTL1	146712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	80915092	80915092	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	80915092	T	G	80915092	3	3	411	1	0	0	0	0	1	0	0	0	1265	1435	50	5	202	5	B3GNTL1	17	80915092	Missense_Mutation	SNP	T	TCGA-BP-5178-01A-01D-1429-08	1748539	80915092	280118	48	23846											
REXO1	57455	broad.mit.edu;hgsc.bcm.edu	37	19	1827759	1827759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	1827759	C	A	1827759	3	1	411	1	0	0	0	0	1	0	0	0	13254	564	20	4	2696	4	REXO1	19	1827759	Missense_Mutation	SNP	C	TCGA-BP-5178-01A-01D-1429-08		1827759	57301224	49	23847											
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	31769985	31769985	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	31769985	A	T	31769985	3	4	411	1	0	0	0	0	1	0	0	0	16637	98	4	5	2535	5	TSHZ3	19	31769985	Missense_Mutation	SNP	A	TCGA-BP-5178-01A-01D-1429-08	29942226	31769985	27358998	50	23848	291	2									
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	31769986	31769986	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	31769986	T	A	31769986	3	1	411	1	0	0	0	0	1	0	0	0	16637	1464	51	5	2536	5	TSHZ3	19	31769986	Missense_Mutation	SNP	T	TCGA-BP-5178-01A-01D-1429-08	1	31769986	27358997	51	23849	291	2									
PLEKHG2	64857	hgsc.bcm.edu;ucsc.edu	37	19	39914662	39914671	+	Frame_Shift_Del	DEL	CCTCCAGGTG	CCTCCAGGTG	-	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	CCTCCAGGTG	CCTCCAGGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	-	39914671	CCTCCAGGTG	-	39914662	7	5	411	1	0	1	0	1	0	0	0	0	12076	506	18	0	2959	0	PLEKHG2	19	39914662	Frame_Shift_Del	DEL	CCTCCAGGTG	TCGA-BP-5178-01A-01D-1429-08	8144676	39914662	19214321	52	23850											
PRX	57716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40903260	40903260	+	Silent	SNP	C	C	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	40903260	C	T	40903260	2	4	411	1	0	0	0	0	0	0	0	1	12652	581	21	2		2	PRX	19	40903260	Silent	SNP	C	TCGA-BP-5178-01A-01D-1429-08	988598	40903260	18225723	53	23851											
GIPR	2696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46174612	46174612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	46174612	G	A	46174612	3	1	411	1	0	0	0	0	1	0	0	0	6402	1145	40	1	252	1	GIPR	19	46174612	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	5271352	46174612	12954371	54	23852											
KLK6	5653	broad.mit.edu;hgsc.bcm.edu	37	19	51462556	51462556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	51462556	G	A	51462556	3	1	411	1	0	0	0	0	1	0	0	0	8415	1116	39	1	139	1	KLK6	19	51462556	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	5287944	51462556	7666427	55	23853											
CACNG6	59285	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54515324	54515324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	54515324	G	A	54515324	3	1	411	1	0	0	0	0	1	0	0	0	2563	1232	43	2	678	2	CACNG6	19	54515324	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	3052768	54515324	4613659	56	23854											
PLCB1	23236	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	8698474	8698474	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	8698474	G	T	8698474	4	4	411	1	0	0	0	0	0	1	0	0	12034	1059	37	4	1546	4	PLCB1	20	8698474	Nonsense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08		8698474	54327046	57	23855											
DIP2A	23181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47970565	47970565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	47970565	G	A	47970565	3	1	411	1	0	0	0	0	1	0	0	0	4529	1087	38	1	2919	1	DIP2A	21	47970565	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08		47970565	159330	58	23856											
NDUFA6	4700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42482196	42482196	+	Silent	SNP	G	G	A	rs150607291	byfrequency	TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	42482196	G	A	42482196	2	1	411	1	0	0	0	0	0	0	0	1	10276	1136	40	1		1	NDUFA6	22	42482196	Silent	SNP	G	TCGA-BP-5178-01A-01D-1429-08		42482196	8822370	59	23857											
CELSR1	9620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	46793698	46793698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	46793698	C	T	46793698	3	4	411	1	0	0	0	0	1	0	0	0	3223	826	29	2	3566	2	CELSR1	22	46793698	Missense_Mutation	SNP	C	TCGA-BP-5178-01A-01D-1429-08	4311502	46793698	4510868	60	23858											
SBF1	6305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50893063	50893063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	A	50893063	G	A	50893063	3	1	411	1	0	0	0	0	1	0	0	0	13871	1232	43	2	784	2	SBF1	22	50893063	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	4099365	50893063	411503	61	23859											
CA5B	11238	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	15790716	15790716	+	Silent	SNP	C	C	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	15790716	C	T	15790716	2	4	411	1	0	0	0	0	0	0	0	1	2522	477	17	2		2	CA5B	23	15790716	Silent	SNP	C	TCGA-BP-5178-01A-01D-1429-08		15790716	139479844	62	23860											
MED12	9968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	70341181	70341181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	T	70341181	G	T	70341181	3	4	411	1	0	0	0	0	1	0	0	0	9435	1174	41	4	762	4	MED12	23	70341181	Missense_Mutation	SNP	G	TCGA-BP-5178-01A-01D-1429-08	54550465	70341181	84929379	63	23861											
NONO	4841	broad.mit.edu;hgsc.bcm.edu	37	X	70516749	70516749	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BP-5178-01A-01D-1429-08	TCGA-BP-5178-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	60888dc5-1408-4bfb-bf27-f3e22f5488e4	ff9ec7ea-b456-45d6-87bb-78d0a4546c3e	G	70516749	T	G	70516749	4	3	411	1	0	0	0	0	0	1	0	0	10541	1471	51	5	813	5	NONO	23	70516749	Nonsense_Mutation	SNP	T	TCGA-BP-5178-01A-01D-1429-08	175568	70516749	84753811	64	23862											
NIPAL3	57185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24766690	24766690	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	24766690	T	A	24766690	3	1	412	1	0	0	0	0	1	0	0	0	10433	1435	50	5	128	5	NIPAL3	1	24766690	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08		24766690	224483931	1	23863											
IPP	3652	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46184982	46184982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	C	46184982	G	C	46184982	3	2	412	1	0	0	0	0	1	0	0	0	7807	1029	36	4	793	4	IPP	1	46184982	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	21418292	46184982	203065639	2	23864	292	2									
IPP	3652	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46184983	46184983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	46184983	T	A	46184983	3	1	412	1	0	0	0	0	1	0	0	0	7807	1638	57	5	794	5	IPP	1	46184983	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08	1	46184983	203065638	3	23865	292	2									
LOC642587	0	broad.mit.edu	37	1	209605623	209605623	+	Missense_Mutation	SNP	G	A	A	rs12407854	byhapmap	TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	209605623	A	A	209605623	3	1	412	1	0	0	0	0	1	0	0	0	8889	1087	38	1	248	1	LOC642587	1	209605623	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	163420640	209605623	39644998	4	23866											
C2orf44	80304	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24261024	24261024	+	Silent	SNP	G	G	C	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	C	24261024	G	C	24261024	2	2	412	1	0	0	0	0	0	0	0	1	2170	987	35	4		4	C2orf44	2	24261024	Silent	SNP	G	TCGA-BP-5180-01A-01D-1429-08		24261024	218938349	5	23867											
SCN1A	6323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	166870294	166870294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	166870294	G	T	166870294	3	4	412	1	0	0	0	0	1	0	0	0	13927	1261	44	4	2400	4	SCN1A	2	166870294	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	142609270	166870294	76329079	6	23868											
CASP10	843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	202050621	202050621	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	-	202050621	T	-	202050621	7	5	412	1	0	1	0	1	0	0	0	0	2671	1725	60	0	123	0	CASP10	2	202050621	Frame_Shift_Del	DEL	T	TCGA-BP-5180-01A-01D-1429-08	35180327	202050621	41148752	7	23869											
DOCK10	55619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	225710302	225710302	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	C	225710302	A	C	225710302	3	2	412	1	0	0	0	0	1	0	0	0	4687	362	13	5	4415	5	DOCK10	2	225710302	Missense_Mutation	SNP	A	TCGA-BP-5180-01A-01D-1429-08	23659681	225710302	17489071	8	23870											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183747	10183747	+	Silent	SNP	C	C	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	10183747	C	A	10183747	2	1	412	1	0	0	0	0	0	0	0	1	17174	610	22	4		4	VHL	3	10183747	Silent	SNP	C	TCGA-BP-5180-01A-01D-1429-08		10183747	187838683	9	23871	293	2									
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183748	10183748	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	10183748	C	T	10183748	4	4	412	1	0	0	0	0	0	1	0	0	17174	595	21	2	219	2	VHL	3	10183748	Nonsense_Mutation	SNP	C	TCGA-BP-5180-01A-01D-1429-08	1	10183748	187838682	10	23872	293	2									
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52637711	52637711	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	52637711	G	A	52637711	4	1	412	1	0	0	0	0	0	1	0	0	11498	1299	45	2	2351	2	PBRM1	3	52637711	Nonsense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	42453963	52637711	145384719	11	23873											
ROBO2	6092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	77666705	77666705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	G	77666705	C	G	77666705	3	3	412	1	0	0	0	0	1	0	0	0	13527	565	20	4	3423	4	ROBO2	3	77666705	Missense_Mutation	SNP	C	TCGA-BP-5180-01A-01D-1429-08	25028994	77666705	120355725	12	23874											
DNAJC21	134218	hgsc.bcm.edu;ucsc.edu	37	5	34935891	34935892	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	-	34935892	CG	-	34935891	7	5	412	1	0	1	0	1	0	0	0	0	4642	536	19	0	278	0	DNAJC21	5	34935891	Frame_Shift_Del	DEL	CG	TCGA-BP-5180-01A-01D-1429-08		34935891	145979369	13	23875											
KIF2A	3796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	61677018	61677018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	61677018	C	T	61677018	3	4	412	1	0	0	0	0	1	0	0	0	8304	838	29	2	2165	2	KIF2A	5	61677018	Missense_Mutation	SNP	C	TCGA-BP-5180-01A-01D-1429-08	26741127	61677018	119238242	14	23876											
PCDHA12	56137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140255906	140255906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	140255906	G	A	140255906	3	1	412	1	0	0	0	0	1	0	0	0	11529	1290	45	2	851	2	PCDHA12	5	140255906	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	78578888	140255906	40659354	15	23877											
RAB32	10981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	146875689	146875689	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	-	146875689	T	-	146875689	7	5	412	1	0	1	0	1	0	0	0	0	12934	1493	52	0	636	0	RAB32	6	146875689	Frame_Shift_Del	DEL	T	TCGA-BP-5180-01A-01D-1429-08		146875689	24239378	16	23878											
PRKDC	5591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	48794597	48794597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	C	48794597	T	C	48794597	3	2	412	1	0	0	0	0	1	0	0	0	12531	1696	59	3	7748	3	PRKDC	8	48794597	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08		48794597	97569425	17	23879											
SULF1	23213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	70533276	70533276	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	70533276	C	T	70533276	4	4	412	1	0	0	0	0	0	1	0	0	15382	711	25	2	1422	2	SULF1	8	70533276	Nonsense_Mutation	SNP	C	TCGA-BP-5180-01A-01D-1429-08	21738679	70533276	75830746	18	23880											
NCOA4	8031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	51582253	51582253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	51582253	G	A	51582253	3	1	412	1	0	0	0	0	1	0	0	0	10238	1377	48	2	621	2	NCOA4	10	51582253	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08		51582253	83952494	19	23881											
TRIM8	81603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	104404879	104404879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	C	104404879	T	C	104404879	3	2	412	1	0	0	0	0	1	0	0	0	16560	1522	53	3	507	3	TRIM8	10	104404879	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08	52822626	104404879	31129868	20	23882											
GPR123	84435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	134910562	134910562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	134910562	C	T	134910562	3	4	412	1	0	0	0	0	1	0	0	0	6644	797	28	2	94	2	GPR123	10	134910562	Missense_Mutation	SNP	C	TCGA-BP-5180-01A-01D-1429-08	30505683	134910562	624185	21	23883											
PHRF1	57661	broad.mit.edu;ucsc.edu	37	11	608267	608267	+	Silent	SNP	C	A	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	608267	A	A	608267	2	1	412	1	0	0	0	0	0	0	0	1	11868	610	22	4		4	PHRF1	11	608267	Silent	SNP	C	TCGA-BP-5180-01A-01D-1429-08		608267	134398249	22	23884											
CACNA1C	775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	2711091	2711091	+	Silent	SNP	G	G	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	2711091	G	T	2711091	2	4	412	1	0	0	0	0	0	0	0	1	2542	1335	47	4		4	CACNA1C	12	2711091	Silent	SNP	G	TCGA-BP-5180-01A-01D-1429-08		2711091	131140804	23	23885											
PRH1	5554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	11035696	11035696	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	11035696	C	T	11035696	5	4	412	1	0	0	0	0	0	0	1	0	12492	927	32	2	448	2	PRH1	12	11035696	Splice_Site	SNP	C	TCGA-BP-5180-01A-01D-1429-08	8324605	11035696	122816199	24	23886											
ARID2	196528	hgsc.bcm.edu	37	12	46123828	46123828	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	46123828	T	A	46123828	3	1	412	1	0	0	0	0	1	0	0	0	915	1681	58	5	100	5	ARID2	12	46123828	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08	35088132	46123828	87728067	25	23887											
UHRF1BP1L	23074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100433380	100433380	+	Silent	SNP	C	C	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	100433380	C	T	100433380	2	4	412	1	0	0	0	0	0	0	0	1	16981	622	22	2		2	UHRF1BP1L	12	100433380	Silent	SNP	C	TCGA-BP-5180-01A-01D-1429-08	54309552	100433380	33418515	26	23888											
SKA3	221150	hgsc.bcm.edu	37	13	21746645	21746645	+	Splice_Site	SNP	T	T	G	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	G	21746645	T	G	21746645	5	3	412	1	0	0	0	0	0	0	1	0	14367	1623	56	5	1149	5	SKA3	13	21746645	Splice_Site	SNP	T	TCGA-BP-5180-01A-01D-1429-08		21746645	93423233	27	23889											
KIAA0564	0	hgsc.bcm.edu;ucsc.edu	37	13	42461418	42461428	+	Frame_Shift_Del	DEL	GGCAAGCCCAA	GGCAAGCCCAA	-	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	GGCAAGCCCAA	GGCAAGCCCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	-	42461428	GGCAAGCCCAA	-	42461418	7	5	412	1	0	1	0	1	0	0	0	0	8192	1348	47	0	5150	0	KIAA0564	13	42461418	Frame_Shift_Del	DEL	GGCAAGCCCAA	TCGA-BP-5180-01A-01D-1429-08	20714773	42461418	72708460	28	23890											
IPO4	79711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24655987	24655987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	G	24655987	T	G	24655987	3	3	412	1	0	0	0	0	1	0	0	0	7802	1493	52	5	2566	5	IPO4	14	24655987	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08		24655987	82693553	29	23891											
RASGRF1	5923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	79356851	79356851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	79356851	G	T	79356851	3	4	412	1	0	0	0	0	1	0	0	0	13085	1020	36	4	3635	4	RASGRF1	15	79356851	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08		79356851	23174541	30	23892											
AP3S2	10239	broad.mit.edu;ucsc.edu	37	15	90431758	90431758	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	C	90431758	C	C	90431758	3	2	412	1	0	0	0	0	1	0	0	0	750	1464	51	3	329	3	AP3S2	15	90431758	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08	11074907	90431758	12099634	31	23893											
C17orf103	256302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	21146678	21146678	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	21146678	T	A	21146678	3	1	412	1	0	0	0	0	1	0	0	0	1852	1609	56	5		5	C17orf103	17	21146678	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08		21146678	60048532	32	23894											
HOXB3	3213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	46628008	46628008	+	Silent	SNP	C	C	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	46628008	C	T	46628008	2	4	412	1	0	0	0	0	0	0	0	1	7309	564	20	2		2	HOXB3	17	46628008	Silent	SNP	C	TCGA-BP-5180-01A-01D-1429-08	25481330	46628008	34567202	33	23895											
ADAMTSL5	339366	broad.mit.edu	37	19	1508092	1508092	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	G	1508092	G	G	1508092	3	3	412	1	0	0	0	0	1	0	0	0	278	623	22	4	933	4	ADAMTSL5	19	1508092	Missense_Mutation	SNP	C	TCGA-BP-5180-01A-01D-1429-08		1508092	57620891	34	23896											
ZNF77	58492	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2933730	2933730	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	2933730	T	A	2933730	3	1	412	1	0	0	0	0	1	0	0	0	18154	1490	52	5	246	5	ZNF77	19	2933730	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08	1425638	2933730	56195253	35	23897											
TLE6	79816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2987728	2987728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	2987728	G	A	2987728	3	1	412	1	0	0	0	0	1	0	0	0	15954	1175	41	2	595	2	TLE6	19	2987728	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	53998	2987728	56141255	36	23898											
MYO9B	4650	broad.mit.edu	37	19	17306197	17306197	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	17306197	A	A	17306197	3	1	412	1	0	0	0	0	1	0	0	0	10092	1087	38	1	4043	1	MYO9B	19	17306197	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	14318469	17306197	41822786	37	23899											
ANO8	57719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17439020	17439020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	C	17439020	G	C	17439020	3	2	412	1	0	0	0	0	1	0	0	0	703	1059	37	4	1545	4	ANO8	19	17439020	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	132823	17439020	41689963	38	23900											
SYT3	84258	broad.mit.edu;hgsc.bcm.edu	37	19	51135742	51135742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	T	51135742	G	T	51135742	3	4	412	1	0	0	0	0	1	0	0	0	15487	1203	42	4	1325	4	SYT3	19	51135742	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	33696722	51135742	7993241	39	23901											
EIF2S2	8894	broad.mit.edu	37	20	32699916	32699916	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	32699916	A	A	32699916	3	1	412	1	0	0	0	0	1	0	0	0	5012	1464	51	5	1036	5	EIF2S2	20	32699916	Missense_Mutation	SNP	T	TCGA-BP-5180-01A-01D-1429-08		32699916	30325604	40	23902											
LIPI	149998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	15561671	15561671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	A	15561671	G	A	15561671	3	1	412	1	0	0	0	0	1	0	0	0	8832	1116	39	1	1302	1	LIPI	21	15561671	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08		15561671	32568224	41	23903											
CLIC6	54102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	36081739	36081739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	C	36081739	G	C	36081739	3	2	412	1	0	0	0	0	1	0	0	0	3532	971	34	4	1820	4	CLIC6	21	36081739	Missense_Mutation	SNP	G	TCGA-BP-5180-01A-01D-1429-08	20520068	36081739	12048156	42	23904											
OSBP2	23762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	31266569	31266569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	G	31266569	A	G	31266569	3	3	412	1	0	0	0	0	1	0	0	0	11281	304	11	3	1017	3	OSBP2	22	31266569	Missense_Mutation	SNP	A	TCGA-BP-5180-01A-01D-1429-08		31266569	20037997	43	23905											
ARSD	414	hgsc.bcm.edu	37	X	2835999	2836007	+	In_Frame_Del	DEL	CCACGCCGG	CCACGCCGG	-	rs113556864		TCGA-BP-5180-01A-01D-1429-08	TCGA-BP-5180-11A-01D-1429-08	CCACGCCGG	CCACGCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a776bde5-7503-459c-8419-dc0d744a651e	f0385a6f-db22-4f21-a571-206fb7f74285	-	2836007	CCACGCCGG	-	2835999	7	5	412	1	0	1	0	1	0	0	0	0	989	623	22	0	1249	0	ARSD	23	2835999	In_Frame_Del	DEL	CCACGCCGG	TCGA-BP-5180-01A-01D-1429-08		2835999	152434561	44	23906											
RAP1GAP	5909	broad.mit.edu	37	1	21936673	21936673	+	Silent	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	21936673	G	A	21936673	2	1	413	1	0	0	0	0	0	0	0	1	13050	1165	41	2		2	RAP1GAP	1	21936673	Silent	SNP	G	TCGA-BP-5181-01A-01D-1429-08		21936673	227313948	1	23907			1	45		2	2	16	N	G_C	3.101053e-05
RAP1GAP	5909	broad.mit.edu	37	1	21936688	21936688	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	21936688	C	T	21936688	3	4	413	1	0	0	0	0	1	0	0	0	13050	826	29	2	1193	2	RAP1GAP	1	21936688	Missense_Mutation	SNP	C	TCGA-BP-5181-01A-01D-1429-08	15	21936688	227313933	2	23908			1	45		2	2	16	N	G_C	3.101053e-05
DMRTB1	63948	broad.mit.edu	37	1	53925249	53925249	+	Silent	SNP	C	C	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	53925249	C	T	53925249	2	4	413	1	0	0	0	0	0	0	0	1	4592	518	18	2		2	DMRTB1	1	53925249	Silent	SNP	C	TCGA-BP-5181-01A-01D-1429-08	31988561	53925249	195325372	3	23909											
NTNG1	22854	broad.mit.edu	37	1	107691260	107691260	+	Silent	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	107691260	G	A	107691260	2	1	413	1	0	0	0	0	0	0	0	1	10711	1103	39	1		1	NTNG1	1	107691260	Silent	SNP	G	TCGA-BP-5181-01A-01D-1429-08	53766011	107691260	141559361	4	23910											
SEMA6C	10500	broad.mit.edu	37	1	151105972	151105972	+	Missense_Mutation	SNP	G	G	C			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	C	151105972	G	C	151105972	3	2	413	1	0	0	0	0	1	0	0	0	14054	1348	47	4	1015	4	SEMA6C	1	151105972	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08	43414712	151105972	98144649	5	23911											
NID1	4811	broad.mit.edu	37	1	236195855	236195856	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	236195856	-	T	236195855	7	5	413	1	0	1	1	0	0	0	0	0	10421	1140	40	0	2420	0	NID1	1	236195855	Frame_Shift_Ins	INS	-	TCGA-BP-5181-01A-01D-1429-08	85089883	236195855	13054766	6	23912											
HNRNPU	3192	broad.mit.edu	37	1	245021386	245021386	+	Missense_Mutation	SNP	G	G	C			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	C	245021386	G	C	245021386	3	2	413	1	0	0	0	0	1	0	0	0	7280	1029	36	4	1088	4	HNRNPU	1	245021386	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08	8825531	245021386	4229235	7	23913											
DNMT3A	1788	broad.mit.edu	37	2	25470606	25470606	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	25470606	A	T	25470606	3	4	413	1	0	0	0	0	1	0	0	0	4678	72	3	5	1934	5	DNMT3A	2	25470606	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08		25470606	217728767	8	23914											
RGPD3	653489	broad.mit.edu	37	2	107052648	107052649	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	107052649	-	A	107052648	7	5	413	1	0	1	1	0	0	0	0	0	13300	1741	61	0	3635	0	RGPD3	2	107052648	Frame_Shift_Ins	INS	-	TCGA-BP-5181-01A-01D-1429-08	81582042	107052648	136146725	9	23915											
ARL6IP6	151188	broad.mit.edu	37	2	153591609	153591609	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	153591609	C	T	153591609	3	4	413	1	0	0	0	0	1	0	0	0	945	855	30	2	566	2	ARL6IP6	2	153591609	Missense_Mutation	SNP	C	TCGA-BP-5181-01A-01D-1429-08	46538961	153591609	89607764	10	23916											
SCN9A	6335	broad.mit.edu	37	2	167085470	167085470	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	167085470	C	T	167085470	3	4	413	1	0	0	0	0	1	0	0	0	13938	710	25	2	2053	2	SCN9A	2	167085470	Missense_Mutation	SNP	C	TCGA-BP-5181-01A-01D-1429-08	13493861	167085470	76113903	11	23917											
COL5A2	1290	broad.mit.edu	37	2	189964840	189964840	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	189964840	A	T	189964840	3	4	413	1	0	0	0	0	1	0	0	0	3699	159	6	5	4341	5	COL5A2	2	189964840	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08	22879370	189964840	53234533	12	23918											
COL4A3	1285	broad.mit.edu	37	2	228118844	228118844	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	228118844	A	G	228118844	3	3	413	1	0	0	0	0	1	0	0	0	3693	72	3	3	836	3	COL4A3	2	228118844	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08	38154004	228118844	15080529	13	23919											
DNER	92737	broad.mit.edu	37	2	230253114	230253114	+	Splice_Site	SNP	T	T	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	230253114	T	G	230253114	5	3	413	1	0	0	0	0	0	0	1	0	4669	1536	53	5	503	5	DNER	2	230253114	Splice_Site	SNP	T	TCGA-BP-5181-01A-01D-1429-08	2134270	230253114	12946259	14	23920											
VHL	7428	broad.mit.edu	37	3	10183805	10183809	+	Frame_Shift_Del	DEL	GACGG	GACGG	-	rs5030808		TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	-	10183809	GACGG	-	10183805	7	5	413	1	0	1	0	1	0	0	0	0	17174	1058	37	0	276	0	VHL	3	10183805	Frame_Shift_Del	DEL	GACGG	TCGA-BP-5181-01A-01D-1429-08		10183805	187838625	15	23921											
PBRM1	55193	broad.mit.edu	37	3	52712614	52712614	+	Splice_Site	SNP	C	C	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	52712614	C	A	52712614	5	1	413	1	0	0	0	0	0	0	1	0	11498	927	32	4	4878	4	PBRM1	3	52712614	Splice_Site	SNP	C	TCGA-BP-5181-01A-01D-1429-08	42528809	52712614	145309816	16	23922											
CADPS	8618	broad.mit.edu	37	3	62498425	62498425	+	Splice_Site	SNP	C	C	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	62498425	C	A	62498425	5	1	413	1	0	0	0	0	0	0	1	0	2572	521	18	4	1517	4	CADPS	3	62498425	Splice_Site	SNP	C	TCGA-BP-5181-01A-01D-1429-08	9785811	62498425	135524005	17	23923											
ZBTB11	27107	broad.mit.edu	37	3	101378747	101378747	+	Silent	SNP	A	A	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	101378747	A	T	101378747	2	4	413	1	0	0	0	0	0	0	0	1	17536	175	7	5		5	ZBTB11	3	101378747	Silent	SNP	A	TCGA-BP-5181-01A-01D-1429-08	38880322	101378747	96643683	18	23924											
NPHP3	27031	broad.mit.edu	37	3	132432049	132432049	+	Missense_Mutation	SNP	T	T	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	132432049	T	A	132432049	3	1	413	1	0	0	0	0	1	0	0	0	10587	1841	64	5	3041	5	NPHP3	3	132432049	Missense_Mutation	SNP	T	TCGA-BP-5181-01A-01D-1429-08	31053302	132432049	65590381	19	23925											
IRX1	79192	broad.mit.edu	37	5	3601149	3601149	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	3601149	G	A	3601149	3	1	413	1	0	0	0	0	1	0	0	0	7850	1087	38	1	1452	1	IRX1	5	3601149	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		3601149	177314111	20	23926											
PCDHB3	56132	broad.mit.edu	37	5	140481574	140481574	+	Silent	SNP	C	C	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	140481574	C	T	140481574	2	4	413	1	0	0	0	0	0	0	0	1	11550	535	19	1		1	PCDHB3	5	140481574	Silent	SNP	C	TCGA-BP-5181-01A-01D-1429-08	136880425	140481574	40433686	21	23927											
G3BP1	10146	broad.mit.edu	37	5	151166239	151166239	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	C	151166239	T	C	151166239	3	2	413	1	0	0	0	0	1	0	0	0	6148	1754	61	3	60	3	G3BP1	5	151166239	Missense_Mutation	SNP	T	TCGA-BP-5181-01A-01D-1429-08	10684665	151166239	29749021	22	23928											
POU5F1	5460	broad.mit.edu	37	6	31138063	31138063	+	Missense_Mutation	SNP	G	G	C			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	C	31138063	G	C	31138063	3	2	413	1	0	0	0	0	1	0	0	0	12288	1116	39	4	767	4	POU5F1	6	31138063	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		31138063	139977004	23	23929											
PHF1	5252	broad.mit.edu	37	6	33382565	33382565	+	Silent	SNP	T	T	C			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	C	33382565	T	C	33382565	2	2	413	1	0	0	0	0	0	0	0	1	11827	1538	54	3		3	PHF1	6	33382565	Silent	SNP	T	TCGA-BP-5181-01A-01D-1429-08	2244502	33382565	137732502	24	23930											
REV3L	5980	broad.mit.edu	37	6	111697637	111697637	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	111697637	G	T	111697637	3	4	413	1	0	0	0	0	1	0	0	0	13253	1290	45	4	7551	4	REV3L	6	111697637	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08	78315072	111697637	59417430	25	23931											
ZHX2	22882	broad.mit.edu	37	8	123965269	123965269	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	123965269	G	A	123965269	3	1	413	1	0	0	0	0	1	0	0	0	17688	1319	46	2	1521	2	ZHX2	8	123965269	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		123965269	22398753	26	23932											
MTSS1	9788	broad.mit.edu	37	8	125603469	125603469	+	Silent	SNP	G	G	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	125603469	G	T	125603469	2	4	413	1	0	0	0	0	0	0	0	1	9969	1335	47	4		4	MTSS1	8	125603469	Silent	SNP	G	TCGA-BP-5181-01A-01D-1429-08	1638200	125603469	20760553	27	23933											
UBQLN1	29979	broad.mit.edu	37	9	86292725	86292725	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	86292725	G	T	86292725	3	4	413	1	0	0	0	0	1	0	0	0	16908	1029	36	4	771	4	UBQLN1	9	86292725	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		86292725	54920706	28	23934											
SLC28A3	64078	broad.mit.edu	37	9	86900351	86900351	+	Missense_Mutation	SNP	T	T	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	86900351	T	G	86900351	3	3	413	1	0	0	0	0	1	0	0	0	14546	1783	62	5	539	5	SLC28A3	9	86900351	Missense_Mutation	SNP	T	TCGA-BP-5181-01A-01D-1429-08	607626	86900351	54313080	29	23935											
PIP4K2A	5305	broad.mit.edu	37	10	23003251	23003251	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	23003251	G	A	23003251	3	1	413	1	0	0	0	0	1	0	0	0	11943	1087	38	1	1255	1	PIP4K2A	10	23003251	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		23003251	112531496	30	23936											
PBLD	64081	broad.mit.edu	37	10	70045112	70045112	+	Missense_Mutation	SNP	T	T	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	70045112	T	G	70045112	3	3	413	1	0	0	0	0	1	0	0	0	11496	1838	64	5	216	5	PBLD	10	70045112	Missense_Mutation	SNP	T	TCGA-BP-5181-01A-01D-1429-08	47041861	70045112	65489635	31	23937											
DDX21	9188	broad.mit.edu	37	10	70742529	70742529	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	70742529	A	T	70742529	3	4	413	1	0	0	0	0	1	0	0	0	4351	69	3	5	2371	5	DDX21	10	70742529	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08	697417	70742529	64792218	32	23938											
MICAL2	9645	broad.mit.edu	37	11	12248593	12248593	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	12248593	G	T	12248593	3	4	413	1	0	0	0	0	1	0	0	0	9577	1174	41	4	1960	4	MICAL2	11	12248593	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		12248593	122757923	33	23939											
CD44	960	broad.mit.edu	37	11	35198275	35198275	+	Missense_Mutation	SNP	T	T	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	35198275	T	A	35198275	3	1	413	1	0	0	0	0	1	0	0	0	3019	1841	64	5	227	5	CD44	11	35198275	Missense_Mutation	SNP	T	TCGA-BP-5181-01A-01D-1429-08	22949682	35198275	99808241	34	23940											
PICALM	8301	broad.mit.edu	37	11	85733457	85733457	+	Silent	SNP	T	T	C			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	C	85733457	T	C	85733457	2	2	413	1	0	0	0	0	0	0	0	1	11887	1567	55	3		3	PICALM	11	85733457	Silent	SNP	T	TCGA-BP-5181-01A-01D-1429-08	50535182	85733457	49273059	35	23941											
CNTN5	53942	broad.mit.edu	37	11	100169931	100169931	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	100169931	G	A	100169931	3	1	413	1	0	0	0	0	1	0	0	0	3646	1203	42	2	2493	2	CNTN5	11	100169931	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08	14436474	100169931	34836585	36	23942											
PRKAG1	5571	broad.mit.edu	37	12	49397588	49397588	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	C	49397588	T	C	49397588	3	2	413	1	0	0	0	0	1	0	0	0	12510	1435	50	3	356	3	PRKAG1	12	49397588	Missense_Mutation	SNP	T	TCGA-BP-5181-01A-01D-1429-08		49397588	84454307	37	23943											
LMBR1L	55716	broad.mit.edu	37	12	49495053	49495053	+	Silent	SNP	G	G	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	49495053	G	T	49495053	2	4	413	1	0	0	0	0	0	0	0	1	8848	1277	45	4		4	LMBR1L	12	49495053	Silent	SNP	G	TCGA-BP-5181-01A-01D-1429-08	97465	49495053	84356842	38	23944											
DIP2B	57609	broad.mit.edu	37	12	51077010	51077010	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	51077010	A	G	51077010	3	3	413	1	0	0	0	0	1	0	0	0	4530	410	15	3	1334	3	DIP2B	12	51077010	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08	1581957	51077010	82774885	39	23945											
PTPRR	5801	broad.mit.edu	37	12	71139699	71139699	+	Silent	SNP	G	G	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	71139699	G	T	71139699	2	4	413	1	0	0	0	0	0	0	0	1	12823	1045	37	4		4	PTPRR	12	71139699	Silent	SNP	G	TCGA-BP-5181-01A-01D-1429-08	20062689	71139699	62712196	40	23946											
CHPT1	56994	broad.mit.edu	37	12	102117531	102117531	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	-	102117531	T	-	102117531	7	5	413	1	0	1	0	1	0	0	0	0	3372	1609	56	0	997	0	CHPT1	12	102117531	Frame_Shift_Del	DEL	T	TCGA-BP-5181-01A-01D-1429-08	30977832	102117531	31734364	41	23947											
ACADS	35	broad.mit.edu	37	12	121175723	121175723	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	121175723	A	G	121175723	3	3	413	1	0	0	0	0	1	0	0	0	114	333	12	3	574	3	ACADS	12	121175723	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08	19058192	121175723	12676172	42	23948											
KL	9365	broad.mit.edu	37	13	33635704	33635704	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	33635704	G	A	33635704	3	1	413	1	0	0	0	0	1	0	0	0	8338	1029	36	2	2502	2	KL	13	33635704	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		33635704	81534174	43	23949	294	2									
KL	9365	broad.mit.edu	37	13	33635705	33635705	+	Missense_Mutation	SNP	T	T	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	33635705	T	A	33635705	3	1	413	1	0	0	0	0	1	0	0	0	8338	1696	59	5	2503	5	KL	13	33635705	Missense_Mutation	SNP	T	TCGA-BP-5181-01A-01D-1429-08	1	33635705	81534173	44	23950	294	2									
TSC2	7249	broad.mit.edu	37	16	2111908	2111908	+	Missense_Mutation	SNP	G	G	A	rs137854007		TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	2111908	G	A	2111908	3	1	413	1	0	0	0	0	1	0	0	0	16618	1290	45	2	1198	2	TSC2	16	2111908	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		2111908	88242845	45	23951											
NAGPA	51172	broad.mit.edu	37	16	5081819	5081819	+	Silent	SNP	C	C	A	rs138461608		TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	5081819	C	A	5081819	2	1	413	1	0	0	0	0	0	0	0	1	10151	465	17	4		4	NAGPA	16	5081819	Silent	SNP	C	TCGA-BP-5181-01A-01D-1429-08	2969911	5081819	85272934	46	23952											
VKORC1	79001	broad.mit.edu	37	16	31104693	31104693	+	Missense_Mutation	SNP	T	T	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	31104693	T	G	31104693	3	3	413	1	0	0	0	0	1	0	0	0	17184	1464	51	5	276	5	VKORC1	16	31104693	Missense_Mutation	SNP	T	TCGA-BP-5181-01A-01D-1429-08	26022874	31104693	59250060	47	23953											
C16orf78	123970	broad.mit.edu	37	16	49407969	49407969	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	49407969	G	A	49407969	3	1	413	1	0	0	0	0	1	0	0	0	1837	1116	39	1	121	1	C16orf78	16	49407969	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08	18303276	49407969	40946784	48	23954											
CCDC102A	92922	broad.mit.edu	37	16	57559847	57559847	+	Missense_Mutation	SNP	C	C	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	57559847	C	G	57559847	3	3	413	1	0	0	0	0	1	0	0	0	2738	855	30	4	902	4	CCDC102A	16	57559847	Missense_Mutation	SNP	C	TCGA-BP-5181-01A-01D-1429-08	8151878	57559847	32794906	49	23955											
FBXO39	162517	broad.mit.edu	37	17	6690673	6690673	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	6690673	G	A	6690673	3	1	413	1	0	0	0	0	1	0	0	0	5754	1175	41	2	1265	2	FBXO39	17	6690673	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		6690673	74504537	50	23956											
SLC5A10	125206	broad.mit.edu	37	17	18916793	18916793	+	Silent	SNP	C	C	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	18916793	C	T	18916793	2	4	413	1	0	0	0	0	0	0	0	1	14675	874	31	1		1	SLC5A10	17	18916793	Silent	SNP	C	TCGA-BP-5181-01A-01D-1429-08	12226120	18916793	62278417	51	23957											
DHRS7B	25979	broad.mit.edu	37	17	21087063	21087063	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	21087063	G	T	21087063	3	4	413	1	0	0	0	0	1	0	0	0	4498	1029	36	4	480	4	DHRS7B	17	21087063	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08	2170270	21087063	60108147	52	23958											
COX11	1353	broad.mit.edu	37	17	53042201	53042201	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	53042201	C	A	53042201	4	1	413	1	0	0	0	0	0	1	0	0	3765	603	21	4	529	4	COX11	17	53042201	Nonsense_Mutation	SNP	C	TCGA-BP-5181-01A-01D-1429-08	31955138	53042201	28153009	53	23959											
CEP192	55125	broad.mit.edu	37	18	13056677	13056677	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	13056677	C	A	13056677	4	1	413	1	0	0	0	0	0	1	0	0	3253	838	29	4	4158	4	CEP192	18	13056677	Nonsense_Mutation	SNP	C	TCGA-BP-5181-01A-01D-1429-08		13056677	65020571	54	23960											
LRG1	116844	broad.mit.edu	37	19	4538076	4538079	+	Frame_Shift_Del	DEL	AGGT	AGGT	-			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	-	4538079	AGGT	-	4538076	7	5	413	1	0	1	0	1	0	0	0	0	8949	188	7	0	127	0	LRG1	19	4538076	Frame_Shift_Del	DEL	AGGT	TCGA-BP-5181-01A-01D-1429-08		4538076	54590907	55	23961											
MLLT1	4298	broad.mit.edu	37	19	6216490	6216490	+	Silent	SNP	G	G	C			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	C	6216490	G	C	6216490	2	2	413	1	0	0	0	0	0	0	0	1	9632	1103	39	4		4	MLLT1	19	6216490	Silent	SNP	G	TCGA-BP-5181-01A-01D-1429-08	1678414	6216490	52912493	56	23962											
RAB8A	4218	broad.mit.edu	37	19	16240402	16240402	+	Missense_Mutation	SNP	G	G	C			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	C	16240402	G	C	16240402	3	2	413	1	0	0	0	0	1	0	0	0	12969	1348	47	4	545	4	RAB8A	19	16240402	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08	10023912	16240402	42888581	57	23963	295	2									
RAB8A	4218	broad.mit.edu	37	19	16240404	16240404	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	16240404	A	T	16240404	3	4	413	1	0	0	0	0	1	0	0	0	12969	275	10	5	547	5	RAB8A	19	16240404	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08	2	16240404	42888579	58	23964	295	2									
SIPA1L3	23094	broad.mit.edu	37	19	38633283	38633283	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	38633283	C	A	38633283	3	1	413	1	0	0	0	0	1	0	0	0	14344	479	17	4	3504	4	SIPA1L3	19	38633283	Missense_Mutation	SNP	C	TCGA-BP-5181-01A-01D-1429-08	22392879	38633283	20495700	59	23965											
CEACAM1	634	broad.mit.edu	37	19	43031337	43031337	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	43031337	C	T	43031337	3	4	413	1	0	0	0	0	1	0	0	0	3189	768	27	1	1429	1	CEACAM1	19	43031337	Missense_Mutation	SNP	C	TCGA-BP-5181-01A-01D-1429-08	4398054	43031337	16097646	60	23966											
SIGLEC11	114132	broad.mit.edu	37	19	50453230	50453230	+	Silent	SNP	C	C	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	50453230	C	T	50453230	2	4	413	1	0	0	0	0	0	0	0	1	14320	564	20	2		2	SIGLEC11	19	50453230	Silent	SNP	C	TCGA-BP-5181-01A-01D-1429-08	7421893	50453230	8675753	61	23967											
ZMYND8	23613	broad.mit.edu	37	20	45905190	45905190	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	A	45905190	G	A	45905190	3	1	413	1	0	0	0	0	1	0	0	0	17723	1203	42	2	2270	2	ZMYND8	20	45905190	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08		45905190	17120330	62	23968											
PRDM15	63977	broad.mit.edu	37	21	43281766	43281766	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	43281766	A	G	43281766	3	3	413	1	0	0	0	0	1	0	0	0	12466	159	6	3	3826	3	PRDM15	21	43281766	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08		43281766	4848129	63	23969											
PCNT	5116	broad.mit.edu	37	21	47776974	47776974	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	47776974	A	T	47776974	3	4	413	1	0	0	0	0	1	0	0	0	11597	11	1	5	2072	5	PCNT	21	47776974	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08	4495208	47776974	352921	64	23970											
SREBF2	6721	broad.mit.edu	37	22	42294664	42294664	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	G	42294664	A	G	42294664	3	3	413	1	0	0	0	0	1	0	0	0	15154	217	8	3	2675	3	SREBF2	22	42294664	Missense_Mutation	SNP	A	TCGA-BP-5181-01A-01D-1429-08		42294664	9009902	65	23971											
TCF20	6942	broad.mit.edu	37	22	42605832	42605832	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-5181-01A-01D-1429-08	TCGA-BP-5181-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae20006-17ea-4a07-8e85-4cfa213a0951	6d0ac19f-1246-4895-8592-cd25ce28cce6	T	42605832	G	T	42605832	3	4	413	1	0	0	0	0	1	0	0	0	15702	1174	41	4	440	4	TCF20	22	42605832	Missense_Mutation	SNP	G	TCGA-BP-5181-01A-01D-1429-08	311168	42605832	8698734	66	23972											
SPSB1	80176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	9416147	9416147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	C	9416147	T	C	9416147	3	2	414	1	0	0	0	0	1	0	0	0	15124	1841	64	3	199	3	SPSB1	1	9416147	Missense_Mutation	SNP	T	TCGA-BP-5182-01A-01D-1429-08		9416147	239834474	1	23973											
UBE4B	10277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10166557	10166557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	10166557	G	A	10166557	3	1	414	1	0	0	0	0	1	0	0	0	16895	1000	35	2	1138	2	UBE4B	1	10166557	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	750410	10166557	239084064	2	23974											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16199600	16199600	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	16199600	C	T	16199600	4	4	414	1	0	0	0	0	0	1	0	0	15050	528	19	1	379	1	SPEN	1	16199600	Nonsense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	6033043	16199600	233051021	3	23975											
USP48	84196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22032286	22032286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	22032286	G	A	22032286	3	1	414	1	0	0	0	0	1	0	0	0	17091	971	34	2	825	2	USP48	1	22032286	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	5832686	22032286	227218335	4	23976											
DCDC2B	149069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32678141	32678141	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	G	32678141	C	G	32678141	3	3	414	1	0	0	0	0	1	0	0	0	4288	565	20	4	596	4	DCDC2B	1	32678141	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	10645855	32678141	216572480	5	23977											
DENND2D	79961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111734927	111734927	+	Silent	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	111734927	C	T	111734927	2	4	414	1	0	0	0	0	0	0	0	1	4433	564	20	2		2	DENND2D	1	111734927	Silent	SNP	C	TCGA-BP-5182-01A-01D-1429-08	79056786	111734927	137515694	6	23978											
KIF14	9928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200562851	200562851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	200562851	C	T	200562851	3	4	414	1	0	0	0	0	1	0	0	0	8283	864	30	2	2414	2	KIF14	1	200562851	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	88827924	200562851	48687770	7	23979											
KIF21B	23046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200959172	200959172	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	200959172	C	T	200959172	5	4	414	1	0	0	0	0	0	0	1	0	8296	695	24	2	1900	2	KIF21B	1	200959172	Splice_Site	SNP	C	TCGA-BP-5182-01A-01D-1429-08	396321	200959172	48291449	8	23980											
TRAF5	7188	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	211545849	211545849	+	Silent	SNP	G	G	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	211545849	G	A	211545849	2	1	414	1	0	0	0	0	0	0	0	1	16456	933	33	2		2	TRAF5	1	211545849	Silent	SNP	G	TCGA-BP-5182-01A-01D-1429-08	10586677	211545849	37704772	9	23981											
ARHGAP25	9938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	69045086	69045086	+	Silent	SNP	C	C	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	69045086	C	A	69045086	2	1	414	1	0	0	0	0	0	0	0	1	874	813	29	4		4	ARHGAP25	2	69045086	Silent	SNP	C	TCGA-BP-5182-01A-01D-1429-08		69045086	174154287	10	23982											
ARHGAP25	9938	hgsc.bcm.edu;ucsc.edu	37	2	69046267	69046267	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	-	69046267	T	-	69046267	7	5	414	1	0	1	0	1	0	0	0	0	874	1435	50	0	1090	0	ARHGAP25	2	69046267	Frame_Shift_Del	DEL	T	TCGA-BP-5182-01A-01D-1429-08	1181	69046267	174153106	11	23983											
POLR1A	25885	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	86325787	86325787	+	Silent	SNP	G	G	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	86325787	G	A	86325787	2	1	414	1	0	0	0	0	0	0	0	1	12216	933	33	2		2	POLR1A	2	86325787	Silent	SNP	G	TCGA-BP-5182-01A-01D-1429-08	17279520	86325787	156873586	12	23984											
NEB	4703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152551064	152551064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	152551064	G	T	152551064	3	4	414	1	0	0	0	0	1	0	0	0	10309	1203	42	4	24588	4	NEB	2	152551064	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	66225277	152551064	90648309	13	23985											
AOX1	316	broad.mit.edu	37	2	201450857	201450857	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	G	201450857	G	G	201450857	3	3	414	1	0	0	0	0	1	0	0	0	729	1783	62	5	28	5	AOX1	2	201450857	Missense_Mutation	SNP	T	TCGA-BP-5182-01A-01D-1429-08	48899793	201450857	41748516	14	23986											
CPS1	1373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	211441087	211441087	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	G	211441087	C	G	211441087	3	3	414	1	0	0	0	0	1	0	0	0	3825	565	20	4	286	4	CPS1	2	211441087	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	9990230	211441087	31758286	15	23987											
ACSL3	2181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	223795455	223795455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	223795455	G	A	223795455	3	1	414	1	0	0	0	0	1	0	0	0	178	942	33	2	1699	2	ACSL3	2	223795455	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	12354368	223795455	19403918	16	23988											
TRANK1	9881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	36872739	36872739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	36872739	C	A	36872739	3	1	414	1	0	0	0	0	1	0	0	0	16466	594	21	4	586	4	TRANK1	3	36872739	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08		36872739	161149691	17	23989											
SNRK	54861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	43389698	43389698	+	Silent	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	43389698	C	T	43389698	2	4	414	1	0	0	0	0	0	0	0	1	14864	813	29	2		2	SNRK	3	43389698	Silent	SNP	C	TCGA-BP-5182-01A-01D-1429-08	6516959	43389698	154632732	18	23990											
KLHDC8B	200942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49212294	49212294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	49212294	G	A	49212294	3	1	414	1	0	0	0	0	1	0	0	0	8370	1291	45	2	671	2	KLHDC8B	3	49212294	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	5822596	49212294	148810136	19	23991											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52443892	52443892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	52443892	C	T	52443892	3	4	414	1	0	0	0	0	1	0	0	0	1311	826	29	2	2254	2	BAP1	3	52443892	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	3231598	52443892	145578538	20	23992											
C3orf17	25871	broad.mit.edu;hgsc.bcm.edu	37	3	112724334	112724334	+	RNA	SNP	C	C	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	112724334	C	A	112724334	1	1	414	0	1	0	0	0	0	0	0	0	2212	580	20	4		4	C3orf17	3	112724334	RNA	SNP	C	TCGA-BP-5182-01A-01D-1429-08	60280442	112724334	85298096	21	23993											
ZBTB20	26137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	114058081	114058081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	G	114058081	A	G	114058081	3	3	414	1	0	0	0	0	1	0	0	0	17541	333	12	3	232	3	ZBTB20	3	114058081	Missense_Mutation	SNP	A	TCGA-BP-5182-01A-01D-1429-08	1333747	114058081	83964349	22	23994											
CCDC48	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128753037	128753037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	128753037	G	T	128753037	3	4	414	1	0	0	0	0	1	0	0	0	2821	1290	45	4	1332	4	CCDC48	3	128753037	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	14694956	128753037	69269393	23	23995											
TLR1	7096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	38799865	38799865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	38799865	G	T	38799865	3	4	414	1	0	0	0	0	1	0	0	0	15961	1165	41	4	1776	4	TLR1	4	38799865	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08		38799865	152354411	24	23996											
AGXT2L1	64850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	109681436	109681436	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	109681436	G	T	109681436	4	4	414	1	0	0	0	0	0	1	0	0	406	1059	37	4	1464	4	AGXT2L1	4	109681436	Nonsense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	70881571	109681436	81472840	25	23997											
NAF1	92345	broad.mit.edu;hgsc.bcm.edu	37	4	164087855	164087855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	164087855	C	A	164087855	3	1	414	1	0	0	0	0	1	0	0	0	10147	768	27	4	1632	4	NAF1	4	164087855	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	54406419	164087855	27066421	26	23998											
ENPP6	133121	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	185138820	185138820	+	Silent	SNP	T	T	C	rs148715663		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	C	185138820	T	C	185138820	2	2	414	1	0	0	0	0	0	0	0	1	5136	1606	56	3		3	ENPP6	4	185138820	Silent	SNP	T	TCGA-BP-5182-01A-01D-1429-08	21050965	185138820	6015456	27	23999											
DDX46	9879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134153324	134153324	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	134153324	G	T	134153324	4	4	414	1	0	0	0	0	0	1	0	0	4366	943	33	4	2827	4	DDX46	5	134153324	Nonsense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08		134153324	46761936	28	24000											
MGC29506	0	broad.mit.edu	37	5	138724269	138724269	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	138724269	T	T	138724269	4	4	414	1	0	0	0	0	0	1	0	0	9558	740	26	2	398	2	MGC29506	5	138724269	Nonsense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	4570945	138724269	42190991	29	24001											
SKIV2L	6499	broad.mit.edu;hgsc.bcm.edu	37	6	31930533	31930533	+	Silent	SNP	G	G	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	31930533	G	A	31930533	2	1	414	1	0	0	0	0	0	0	0	1	14372	1020	36	2		2	SKIV2L	6	31930533	Silent	SNP	G	TCGA-BP-5182-01A-01D-1429-08		31930533	139184534	30	24002											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56471874	56471874	+	Intron	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	56471874	G	T	56471874	1	4	414	0	1	0	0	0	0	0	0	0	4785	1305	45	4		4	DST	6	56471874	Intron	SNP	G	TCGA-BP-5182-01A-01D-1429-08	24541341	56471874	114643193	31	24003											
LRRC4	64101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127670481	127670481	+	Silent	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	127670481	C	T	127670481	2	4	414	1	0	0	0	0	0	0	0	1	9004	680	24	2		2	LRRC4	7	127670481	Silent	SNP	C	TCGA-BP-5182-01A-01D-1429-08		127670481	31468182	32	24004											
FLNC	2318	hgsc.bcm.edu;ucsc.edu	37	7	128483008	128483008	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	-	128483008	G	-	128483008	7	5	414	1	0	1	0	1	0	0	0	0	5942	1014	35	0	2612	0	FLNC	7	128483008	Frame_Shift_Del	DEL	G	TCGA-BP-5182-01A-01D-1429-08	812527	128483008	30655655	33	24005											
ZMYND11	10771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	298337	298337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	298337	C	A	298337	3	1	414	1	0	0	0	0	1	0	0	0	17718	855	30	4	1811	4	ZMYND11	10	298337	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08		298337	135236410	34	24006											
ADAMTS14	140766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	72498659	72498659	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	C	72498659	G	C	72498659	3	2	414	1	0	0	0	0	1	0	0	0	259	1203	42	4	1712	4	ADAMTS14	10	72498659	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	72200322	72498659	63036088	35	24007											
TLL2	7093	broad.mit.edu;ucsc.edu	37	10	98182331	98182331	+	Silent	SNP	G	T	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	98182331	T	T	98182331	2	4	414	1	0	0	0	0	0	0	0	1	15958	1335	47	4		4	TLL2	10	98182331	Silent	SNP	G	TCGA-BP-5182-01A-01D-1429-08	25683672	98182331	37352416	36	24008											
SEC31B	25956	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	102249094	102249094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	102249094	T	A	102249094	3	1	414	1	0	0	0	0	1	0	0	0	14012	1551	54	5	469	5	SEC31B	10	102249094	Missense_Mutation	SNP	T	TCGA-BP-5182-01A-01D-1429-08	4066763	102249094	33285653	37	24009											
TAF5	6877	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	105133273	105133273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	G	105133273	T	G	105133273	3	3	414	1	0	0	0	0	1	0	0	0	15540	1841	64	5	724	5	TAF5	10	105133273	Missense_Mutation	SNP	T	TCGA-BP-5182-01A-01D-1429-08	2884179	105133273	30401474	38	24010											
CARS	833	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	3039892	3039892	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	G	3039892	T	G	3039892	3	3	414	1	0	0	0	0	1	0	0	0	2659	1850	64	5	1064	5	CARS	11	3039892	Missense_Mutation	SNP	T	TCGA-BP-5182-01A-01D-1429-08		3039892	131966624	39	24011											
ARFGAP2	84364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47193064	47193064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	47193064	C	A	47193064	3	1	414	1	0	0	0	0	1	0	0	0	850	536	19	4	739	4	ARFGAP2	11	47193064	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	44153172	47193064	87813452	40	24012											
BBS1	582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66278152	66278152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	66278152	G	A	66278152	3	1	414	1	0	0	0	0	1	0	0	0	1335	1174	41	2	24	2	BBS1	11	66278152	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	19085088	66278152	68728364	41	24013											
EXPH5	23086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108383516	108383516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	108383516	G	T	108383516	3	4	414	1	0	0	0	0	1	0	0	0	5324	933	33	4	3255	4	EXPH5	11	108383516	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	42105364	108383516	26623000	42	24014											
MLL	4297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118375278	118375278	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	118375278	G	T	118375278	4	4	414	1	0	0	0	0	0	1	0	0	9627	1291	45	4	8768	4	MLL	11	118375278	Nonsense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	9991762	118375278	16631238	43	24015											
FEZ1	9638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	125324081	125324081	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	G	125324081	T	G	125324081	3	3	414	1	0	0	0	0	1	0	0	0	5830	1725	60	5	229	5	FEZ1	11	125324081	Missense_Mutation	SNP	T	TCGA-BP-5182-01A-01D-1429-08	6948803	125324081	9682435	44	24016											
PRIM1	5557	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57139904	57139904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	57139904	C	T	57139904	4	4	414	1	0	0	0	0	0	1	0	0	12500	624	22	2	794	2	PRIM1	12	57139904	Nonsense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08		57139904	76711991	45	24017											
PTPRB	5787	broad.mit.edu;ucsc.edu	37	12	70970258	70970258	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	-	70970258	-	-	70970258	7	5	414	1	0	1	0	1	0	0	0	0	12809	246	9	0	3997	0	PTPRB	12	70970258	Frame_Shift_Del	DEL	A	TCGA-BP-5182-01A-01D-1429-08	13830354	70970258	62881637	46	24018											
PSMB11	122706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23511526	23511526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	23511526	G	A	23511526	3	1	414	1	0	0	0	0	1	0	0	0	12686	1116	39	1	94	1	PSMB11	14	23511526	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08		23511526	83838014	47	24019											
FNTB	2342	broad.mit.edu;ucsc.edu	37	14	65482387	65482387	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	G	65482387	G	G	65482387	3	3	414	1	0	0	0	0	1	0	0	0	5985	477	17	4	341	4	FNTB	14	65482387	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	41970861	65482387	41867153	48	24020											
TMEM87A	25963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42512318	42512318	+	Silent	SNP	T	T	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	42512318	T	A	42512318	2	1	414	1	0	0	0	0	0	0	0	1	16222	1451	51	5		5	TMEM87A	15	42512318	Silent	SNP	T	TCGA-BP-5182-01A-01D-1429-08		42512318	60019074	49	24021											
CCDC78	124093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	775560	775560	+	Silent	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	775560	C	T	775560	2	4	414	1	0	0	0	0	0	0	0	1	2854	610	22	2		2	CCDC78	16	775560	Silent	SNP	C	TCGA-BP-5182-01A-01D-1429-08		775560	89579193	50	24022											
SRCAP	10847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30735820	30735820	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	C	30735820	G	C	30735820	3	2	414	1	0	0	0	0	1	0	0	0	15147	1174	41	4	5165	4	SRCAP	16	30735820	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	29960260	30735820	59618933	51	24023											
PYDC1	260434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31228342	31228342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	C	31228342	G	C	31228342	3	2	414	1	0	0	0	0	1	0	0	0	12871	1145	40	4	265	4	PYDC1	16	31228342	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	492522	31228342	59126411	52	24024											
HAS3	3038	broad.mit.edu;hgsc.bcm.edu	37	16	69149149	69149149	+	Silent	SNP	T	T	C	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	C	69149149	T	C	69149149	2	2	414	1	0	0	0	0	0	0	0	1	6970	1606	56	3		3	HAS3	16	69149149	Silent	SNP	T	TCGA-BP-5182-01A-01D-1429-08	37920807	69149149	21205604	53	24025											
KLHL36	79786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	84691436	84691436	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	-	84691436	G	-	84691436	7	5	414	1	0	1	0	1	0	0	0	0	8396	1103	39	0	1029	0	KLHL36	16	84691436	Frame_Shift_Del	DEL	G	TCGA-BP-5182-01A-01D-1429-08	15542287	84691436	5663317	54	24026											
NUP88	4927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5322749	5322749	+	Silent	SNP	T	T	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	5322749	T	A	5322749	2	1	414	1	0	0	0	0	0	0	0	1	10778	1606	56	5		5	NUP88	17	5322749	Silent	SNP	T	TCGA-BP-5182-01A-01D-1429-08		5322749	75872461	55	24027											
GPR179	440435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36486397	36486397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	36486397	G	T	36486397	3	4	414	1	0	0	0	0	1	0	0	0	6681	1348	47	4	4052	4	GPR179	17	36486397	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	31163648	36486397	44708813	56	24028											
EIF1	10209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39846142	39846142	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	39846142	A	T	39846142	3	4	414	1	0	0	0	0	1	0	0	0	4992	69	3	5	150	5	EIF1	17	39846142	Missense_Mutation	SNP	A	TCGA-BP-5182-01A-01D-1429-08	3359745	39846142	41349068	57	24029											
L3MBTL4	91133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	6311557	6311557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	6311557	C	T	6311557	3	4	414	1	0	0	0	0	1	0	0	0	8601	768	27	1	1875	1	L3MBTL4	18	6311557	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08		6311557	71765691	58	24030											
APC2	10297	broad.mit.edu;hgsc.bcm.edu	37	19	1467881	1467881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	G	1467881	C	G	1467881	3	3	414	1	0	0	0	0	1	0	0	0	764	506	18	4	4635	4	APC2	19	1467881	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08		1467881	57661102	59	24031											
DNAJB1	3337	hgsc.bcm.edu;ucsc.edu	37	19	14627721	14627722	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	14627722	-	A	14627721	7	5	414	1	0	1	1	0	0	0	0	0	4617	594	21	0	681	0	DNAJB1	19	14627721	Frame_Shift_Ins	INS	-	TCGA-BP-5182-01A-01D-1429-08	13159840	14627721	44501262	60	24032											
OR7A10	390892	broad.mit.edu;hgsc.bcm.edu	37	19	14952548	14952548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	14952548	C	T	14952548	3	4	414	1	0	0	0	0	1	0	0	0	11221	739	26	2	791	2	OR7A10	19	14952548	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08	324827	14952548	44176435	61	24033											
JAK3	3718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17945490	17945490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	17945490	G	T	17945490	3	4	414	1	0	0	0	0	1	0	0	0	7946	1232	43	4	1166	4	JAK3	19	17945490	Missense_Mutation	SNP	G	TCGA-BP-5182-01A-01D-1429-08	2992942	17945490	41183493	62	24034											
ADARB1	104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	46642103	46642103	+	Silent	SNP	C	C	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	46642103	C	A	46642103	2	1	414	1	0	0	0	0	0	0	0	1	282	813	29	4		4	ADARB1	21	46642103	Silent	SNP	C	TCGA-BP-5182-01A-01D-1429-08		46642103	1487792	63	24035											
CLTCL1	8218	broad.mit.edu;hgsc.bcm.edu	37	22	19184099	19184099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	19184099	C	A	19184099	3	1	414	1	0	0	0	0	1	0	0	0	3569	594	21	4	1012	4	CLTCL1	22	19184099	Missense_Mutation	SNP	C	TCGA-BP-5182-01A-01D-1429-08		19184099	32120467	64	24036											
LIMK2	3985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	31674310	31674310	+	Silent	SNP	C	C	A	novel		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	A	31674310	C	A	31674310	2	1	414	1	0	0	0	0	0	0	0	1	8809	668	24	4		4	LIMK2	22	31674310	Silent	SNP	C	TCGA-BP-5182-01A-01D-1429-08	12490211	31674310	19630256	65	24037											
H1F0	3005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	38201647	38201647	+	Silent	SNP	C	C	T	rs151035348		TCGA-BP-5182-01A-01D-1429-08	TCGA-BP-5182-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	00523547-da1c-4bb1-a627-c0946849b376	24dc7a15-3446-419c-b2be-75107c669f93	T	38201647	C	T	38201647	2	4	414	1	0	0	0	0	0	0	0	1	6927	874	31	1		1	H1F0	22	38201647	Silent	SNP	C	TCGA-BP-5182-01A-01D-1429-08	6527337	38201647	13102919	66	24038											
SYF2	25949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	25549846	25549846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	25549846	T	A	25549846	3	1	415	1	0	0	0	0	1	0	0	0	15449	1783	62	5	92	5	SYF2	1	25549846	Missense_Mutation	SNP	T	TCGA-BP-5183-01A-01D-1429-08		25549846	223700775	1	24039											
CNKSR1	10256	broad.mit.edu;hgsc.bcm.edu	37	1	26514973	26514973	+	Silent	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	26514973	G	A	26514973	2	1	415	1	0	0	0	0	0	0	0	1	3608	991	35	2		2	CNKSR1	1	26514973	Silent	SNP	G	TCGA-BP-5183-01A-01D-1429-08	965127	26514973	222735648	2	24040											
RABGGTB	5876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	76254935	76254935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	C	76254935	G	C	76254935	3	2	415	1	0	0	0	0	1	0	0	0	12981	942	33	4	213	4	RABGGTB	1	76254935	Missense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08	49739962	76254935	172995686	3	24041											
NOS1AP	9722	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	162324977	162324977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	162324977	G	T	162324977	3	4	415	1	0	0	0	0	1	0	0	0	10549	1217	42	4	622	4	NOS1AP	1	162324977	Missense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08	86070042	162324977	86925644	4	24042											
TPR	7175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186302399	186302399	+	Silent	SNP	T	T	C	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	C	186302399	T	C	186302399	2	2	415	1	0	0	0	0	0	0	0	1	16428	1683	59	3		3	TPR	1	186302399	Silent	SNP	T	TCGA-BP-5183-01A-01D-1429-08	23977422	186302399	62948222	5	24043											
RPS6KC1	26750	broad.mit.edu;hgsc.bcm.edu	37	1	213349818	213349818	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	G	213349818	C	G	213349818	3	3	415	1	0	0	0	0	1	0	0	0	13671	681	24	4	1057	4	RPS6KC1	1	213349818	Missense_Mutation	SNP	C	TCGA-BP-5183-01A-01D-1429-08	27047419	213349818	35900803	6	24044											
ARF1	375	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	228285075	228285075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	C	228285075	A	C	228285075	3	2	415	1	0	0	0	0	1	0	0	0	844	217	8	5	187	5	ARF1	1	228285075	Missense_Mutation	SNP	A	TCGA-BP-5183-01A-01D-1429-08	14935257	228285075	20965546	7	24045											
ZFP36L2	678	hgsc.bcm.edu	37	2	43452740	43452740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	43452740	G	A	43452740	3	1	415	1	0	0	0	0	1	0	0	0	17659	1087	38	1	1285	1	ZFP36L2	2	43452740	Missense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08		43452740	199746633	8	24046											
XPO1	7514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61709537	61709537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	G	61709537	A	G	61709537	3	3	415	1	0	0	0	0	1	0	0	0	17457	275	10	3	277	3	XPO1	2	61709537	Missense_Mutation	SNP	A	TCGA-BP-5183-01A-01D-1429-08	18256797	61709537	181489836	9	24047											
HOXD11	3237	broad.mit.edu	37	2	176972132	176972132	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	176972132	T	T	176972132	3	4	415	1	0	0	0	0	1	0	0	0	7327	739	26	2	51	2	HOXD11	2	176972132	Missense_Mutation	SNP	C	TCGA-BP-5183-01A-01D-1429-08	115262595	176972132	66227241	10	24048											
ABI2	10152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	204281636	204281636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	204281636	G	T	204281636	3	4	415	1	0	0	0	0	1	0	0	0	89	942	33	4	1118	4	ABI2	2	204281636	Missense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08	27309504	204281636	38917737	11	24049											
CAB39	51719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	231682474	231682474	+	Silent	SNP	C	C	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	231682474	C	T	231682474	2	4	415	1	0	0	0	0	0	0	0	1	2527	871	31	1		1	CAB39	2	231682474	Silent	SNP	C	TCGA-BP-5183-01A-01D-1429-08	27400838	231682474	11516899	12	24050											
SH3BP4	23677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	235949909	235949910	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	235949910	CA	-	235949909	7	5	415	1	0	1	0	1	0	0	0	0	14259	595	21	0	502	0	SH3BP4	2	235949909	Frame_Shift_Del	DEL	CA	TCGA-BP-5183-01A-01D-1429-08	4267435	235949909	7249464	13	24051											
CXCR7	57007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	237489349	237489349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	237489349	T	A	237489349	3	1	415	1	0	0	0	0	1	0	0	0	4098	1580	55	5	243	5	CXCR7	2	237489349	Missense_Mutation	SNP	T	TCGA-BP-5183-01A-01D-1429-08	1539440	237489349	5710024	14	24052											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188248	10188248	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	10188248	A	-	10188248	7	5	415	1	0	1	0	1	0	0	0	0	17174	362	13	0	397	0	VHL	3	10188248	Frame_Shift_Del	DEL	A	TCGA-BP-5183-01A-01D-1429-08		10188248	187834182	15	24053											
ITGA9	3680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	37821430	37821442	+	Frame_Shift_Del	DEL	ACTGTAACTTTAG	ACTGTAACTTTAG	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	ACTGTAACTTTAG	ACTGTAACTTTAG	ACTGTAACTTTAG	-	ACTGTAACTTTAG	ACTGTAACTTTAG	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	37821442	ACTGTAACTTTAG	-	37821430	7	5	415	1	0	1	0	1	0	0	0	0	7890	159	6	0	2803	0	ITGA9	3	37821430	Frame_Shift_Del	DEL	ACTGTAACTTTAG	TCGA-BP-5183-01A-01D-1429-08	27633182	37821430	160201000	16	24054											
MUC4	4585	broad.mit.edu	37	3	195505763	195505763	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	195505763	A	A	195505763	3	1	415	1	0	0	0	0	1	0	0	0	9985	1000	35	2		2	MUC4	3	195505763	Missense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08	157684333	195505763	2516667	17	24055											
RAPGEF6	51735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	130841087	130841087	+	Silent	SNP	T	T	G	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	G	130841087	T	G	130841087	2	3	415	1	0	0	0	0	0	0	0	1	13061	1770	62	5		5	RAPGEF6	5	130841087	Silent	SNP	T	TCGA-BP-5183-01A-01D-1429-08		130841087	50074173	18	24056											
TRERF1	55809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	42232448	42232448	+	Silent	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	42232448	G	A	42232448	2	1	415	1	0	0	0	0	0	0	0	1	16487	1277	45	2		2	TRERF1	6	42232448	Silent	SNP	G	TCGA-BP-5183-01A-01D-1429-08		42232448	128882619	19	24057											
PGAM2	5224	hgsc.bcm.edu;ucsc.edu	37	7	44104731	44104735	+	Frame_Shift_Del	DEL	TAGTA	TAGTA	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	TAGTA	TAGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	44104735	TAGTA	-	44104731	7	5	415	1	0	1	0	1	0	0	0	0	11781	1638	57	0	375	0	PGAM2	7	44104731	Frame_Shift_Del	DEL	TAGTA	TCGA-BP-5183-01A-01D-1429-08		44104731	115033932	20	24058											
MCPH1	79648	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	6302771	6302771	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	G	6302771	T	G	6302771	3	3	415	1	0	0	0	0	1	0	0	0	9405	1812	63	5	1558	5	MCPH1	8	6302771	Missense_Mutation	SNP	T	TCGA-BP-5183-01A-01D-1429-08		6302771	140061251	21	24059											
CTSB	1508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	11710155	11710155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	11710155	C	A	11710155	3	1	415	1	0	0	0	0	1	0	0	0	4032	478	17	4	875	4	CTSB	8	11710155	Missense_Mutation	SNP	C	TCGA-BP-5183-01A-01D-1429-08	5407384	11710155	134653867	22	24060											
DOCK5	80005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	25167945	25167945	+	Silent	SNP	C	C	G	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	G	25167945	C	G	25167945	2	3	415	1	0	0	0	0	0	0	0	1	4692	900	32	4		4	DOCK5	8	25167945	Silent	SNP	C	TCGA-BP-5183-01A-01D-1429-08	13457790	25167945	121196077	23	24061											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113650949	113650949	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	113650949	C	A	113650949	4	1	415	1	0	0	0	0	0	1	0	0	3948	835	29	4	7825	4	CSMD3	8	113650949	Nonsense_Mutation	SNP	C	TCGA-BP-5183-01A-01D-1429-08	88483004	113650949	32713073	24	24062											
FAM83A	84985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	124204063	124204063	+	Silent	SNP	T	T	C	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	C	124204063	T	C	124204063	2	2	415	1	0	0	0	0	0	0	0	1	5640	1461	51	3		3	FAM83A	8	124204063	Silent	SNP	T	TCGA-BP-5183-01A-01D-1429-08	10553114	124204063	22159959	25	24063											
FREM1	158326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	14748627	14748627	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	14748627	A	-	14748627	7	5	415	1	0	1	0	1	0	0	0	0	6051	330	12	0	999	0	FREM1	9	14748627	Frame_Shift_Del	DEL	A	TCGA-BP-5183-01A-01D-1429-08		14748627	126464804	26	24064											
C9orf114	51490	broad.mit.edu	37	9	131587330	131587330	+	Splice_Site	DEL	T	-	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	131587330	-	-	131587330	8	5	415	1	0	1	0	1	0	0	1	0	2451	1594	55	0	512	0	C9orf114	9	131587330	Splice_Site	DEL	T	TCGA-BP-5183-01A-01D-1429-08	116838703	131587330	9626101	27	24065											
CHAT	1103	broad.mit.edu;hgsc.bcm.edu	37	10	50833615	50833615	+	Silent	SNP	C	C	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	50833615	C	T	50833615	2	4	415	1	0	0	0	0	0	0	0	1	3315	639	23	1		1	CHAT	10	50833615	Silent	SNP	C	TCGA-BP-5183-01A-01D-1429-08		50833615	84701132	28	24066											
VWA2	340706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	116038497	116038497	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	116038497	C	-	116038497	7	5	415	1	0	1	0	1	0	0	0	0	17251	506	18	0	746	0	VWA2	10	116038497	Frame_Shift_Del	DEL	C	TCGA-BP-5183-01A-01D-1429-08	65204882	116038497	19496250	29	24067											
LRP5	4041	broad.mit.edu;ucsc.edu	37	11	68181463	68181474	+	In_Frame_Del	DEL	GCAGCCGCAACT	-	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	GCAGCCGCAACT	GCAGCCGCAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	68181474	-	-	68181463	7	5	415	1	0	1	0	1	0	0	0	0	8967	971	34	0	2856	0	LRP5	11	68181463	In_Frame_Del	DEL	GCAGCCGCAACT	TCGA-BP-5183-01A-01D-1429-08		68181463	66825053	30	24068											
NEK3	4752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	52709999	52709999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	52709999	C	T	52709999	3	4	415	1	0	0	0	0	1	0	0	0	10332	521	18	2	357	2	NEK3	13	52709999	Missense_Mutation	SNP	C	TCGA-BP-5183-01A-01D-1429-08		52709999	62459879	31	24069											
CLDN10	9071	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	96086287	96086287	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	96086287	T	-	96086287	7	5	415	1	0	1	0	1	0	0	0	0	3474	1435	50	0	202	0	CLDN10	13	96086287	Frame_Shift_Del	DEL	T	TCGA-BP-5183-01A-01D-1429-08	43376288	96086287	19083591	32	24070											
UACA	55075	hgsc.bcm.edu;ucsc.edu	37	15	70961379	70961380	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	TA	70961380	-	TA	70961379	7	5	415	1	0	1	1	0	0	0	0	0	16836	1020	36	0	2622	0	UACA	15	70961379	Frame_Shift_Ins	INS	-	TCGA-BP-5183-01A-01D-1429-08		70961379	31570013	33	24071											
GP2	2813	broad.mit.edu;hgsc.bcm.edu	37	16	20331781	20331781	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	20331781	G	A	20331781	4	1	415	1	0	0	0	0	0	1	0	0	6589	1328	46	2	971	2	GP2	16	20331781	Nonsense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08		20331781	70022972	34	24072											
RLTPR	146206	hgsc.bcm.edu	37	16	67688684	67688685	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	G	67688685	-	G	67688684	7	5	415	1	0	1	1	0	0	0	0	0	13407	759	27	0	3712	0	RLTPR	16	67688684	Frame_Shift_Ins	INS	-	TCGA-BP-5183-01A-01D-1429-08	47356903	67688684	22666069	35	24073											
POLR2A	5430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7416113	7416113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	7416113	G	A	7416113	3	1	415	1	0	0	0	0	1	0	0	0	12221	1203	42	2	4737	2	POLR2A	17	7416113	Missense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08		7416113	73779097	36	24074											
POLR2A	5430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7416181	7416181	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	7416181	G	A	7416181	4	1	415	1	0	0	0	0	0	1	0	0	12221	1270	44	2	4805	2	POLR2A	17	7416181	Nonsense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08	68	7416181	73779029	37	24075											
KRBA2	124751	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8273274	8273274	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	8273274	T	A	8273274	3	1	415	1	0	0	0	0	1	0	0	0	8447	1490	52	5	825	5	KRBA2	17	8273274	Missense_Mutation	SNP	T	TCGA-BP-5183-01A-01D-1429-08	857093	8273274	72921936	38	24076											
STX8	9482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	9153958	9153958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	9153958	C	T	9153958	3	4	415	1	0	0	0	0	1	0	0	0	15363	826	29	2	66	2	STX8	17	9153958	Missense_Mutation	SNP	C	TCGA-BP-5183-01A-01D-1429-08	880684	9153958	72041252	39	24077											
UBE2O	63893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74392558	74392558	+	Silent	SNP	G	G	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	74392558	G	T	74392558	2	4	415	1	0	0	0	0	0	0	0	1	16880	1164	41	4		4	UBE2O	17	74392558	Silent	SNP	G	TCGA-BP-5183-01A-01D-1429-08	65238600	74392558	6802652	40	24078											
TMX3	54495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	66348333	66348333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	66348333	G	A	66348333	3	1	415	1	0	0	0	0	1	0	0	0	16280	1348	47	2	456	2	TMX3	18	66348333	Missense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08		66348333	11728915	41	24079											
ZFR2	23217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3813939	3813939	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	G	3813939	C	G	3813939	3	3	415	1	0	0	0	0	1	0	0	0	17672	564	20	4	722	4	ZFR2	19	3813939	Missense_Mutation	SNP	C	TCGA-BP-5183-01A-01D-1429-08		3813939	55315044	42	24080	296	2									
ZFR2	23217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3813948	3813948	+	Silent	SNP	G	G	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	3813948	G	T	3813948	2	4	415	1	0	0	0	0	0	0	0	1	17672	1103	39	4		4	ZFR2	19	3813948	Silent	SNP	G	TCGA-BP-5183-01A-01D-1429-08	9	3813948	55315035	43	24081	296	2									
ZNF266	10781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9525150	9525150	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	9525150	T	-	9525150	7	5	415	1	0	1	0	1	0	0	0	0	17817	1696	59	0	1202	0	ZNF266	19	9525150	Frame_Shift_Del	DEL	T	TCGA-BP-5183-01A-01D-1429-08	5711202	9525150	49603833	44	24082											
KEAP1	9817	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10602352	10602352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	G	10602352	A	G	10602352	3	3	415	1	0	0	0	0	1	0	0	0	8148	217	8	3	664	3	KEAP1	19	10602352	Missense_Mutation	SNP	A	TCGA-BP-5183-01A-01D-1429-08	1077202	10602352	48526631	45	24083											
ZNF257	113835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	22270900	22270900	+	Silent	SNP	C	C	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	22270900	C	A	22270900	2	1	415	1	0	0	0	0	0	0	0	1	17812	784	28	4		4	ZNF257	19	22270900	Silent	SNP	C	TCGA-BP-5183-01A-01D-1429-08	11668548	22270900	36858083	46	24084											
ZNF568	374900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37428114	37428114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	37428114	G	A	37428114	3	1	415	1	0	0	0	0	1	0	0	0	18011	1175	41	2	342	2	ZNF568	19	37428114	Missense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08	15157214	37428114	21700869	47	24085											
PSG1	5669	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	43376181	43376181	+	Silent	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	43376181	G	A	43376181	2	1	415	1	0	0	0	0	0	0	0	1	12663	987	35	2		2	PSG1	19	43376181	Silent	SNP	G	TCGA-BP-5183-01A-01D-1429-08	5948067	43376181	15752802	48	24086											
SLC6A16	28968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49797187	49797187	+	Silent	SNP	C	C	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	49797187	C	T	49797187	2	4	415	1	0	0	0	0	0	0	0	1	14692	709	25	2		2	SLC6A16	19	49797187	Silent	SNP	C	TCGA-BP-5183-01A-01D-1429-08	6421006	49797187	9331796	49	24087											
NCOA3	8202	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	46268421	46268421	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	G	46268421	C	G	46268421	3	3	415	1	0	0	0	0	1	0	0	0	10237	564	20	4	2888	4	NCOA3	20	46268421	Missense_Mutation	SNP	C	TCGA-BP-5183-01A-01D-1429-08		46268421	16757099	50	24088											
ITSN1	6453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	35254745	35254745	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	-	35254745	A	-	35254745	7	5	415	1	0	1	0	1	0	0	0	0	7933	363	13	0	4680	0	ITSN1	21	35254745	Frame_Shift_Del	DEL	A	TCGA-BP-5183-01A-01D-1429-08		35254745	12875150	51	24089											
DSCR6	53820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	38385914	38385914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	C	38385914	G	C	38385914	3	2	415	1	0	0	0	0	1	0	0	0	4775	1377	48	4	245	4	DSCR6	21	38385914	Missense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08	3131169	38385914	9743981	52	24090											
CECR1	51816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	17690279	17690279	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	A	17690279	G	A	17690279	4	1	415	1	0	0	0	0	0	1	0	0	3207	1299	45	2	1316	2	CECR1	22	17690279	Nonsense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08		17690279	33614287	53	24091											
SEPT3	55964	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42383654	42383654	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5183-01A-01D-1429-08	TCGA-BP-5183-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cd4c37c3-95f2-4612-b6a8-9d6d1dfb5fd4	3ac4a265-3777-4983-a7ce-c4a1674df004	T	42383654	G	T	42383654	4	4	415	1	0	0	0	0	0	1	0	0	14078	1291	45	4	460	4	SEPT3	22	42383654	Nonsense_Mutation	SNP	G	TCGA-BP-5183-01A-01D-1429-08	24693375	42383654	8920912	54	24092											
ELOVL1	64834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43829743	43829743	+	Silent	SNP	C	C	T	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	T	43829743	C	T	43829743	2	4	416	1	0	0	0	0	0	0	0	1	5075	564	20	2		2	ELOVL1	1	43829743	Silent	SNP	C	TCGA-BP-5184-01A-01D-1429-08		43829743	205420878	1	24093											
CACHD1	57685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	65117974	65117974	+	Silent	SNP	T	T	C	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	C	65117974	T	C	65117974	2	2	416	1	0	0	0	0	0	0	0	1	2539	1596	56	3		3	CACHD1	1	65117974	Silent	SNP	T	TCGA-BP-5184-01A-01D-1429-08	21288231	65117974	184132647	2	24094											
PMVK	10654	broad.mit.edu	37	1	154904889	154904889	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	T	154904889	T	T	154904889	3	4	416	1	0	0	0	0	1	0	0	0	12151	72	3	5	496	5	PMVK	1	154904889	Missense_Mutation	SNP	A	TCGA-BP-5184-01A-01D-1429-08	89786915	154904889	94345732	3	24095											
KCNH7	90134	broad.mit.edu;hgsc.bcm.edu	37	2	163253263	163253263	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	G	163253263	T	G	163253263	3	3	416	1	0	0	0	0	1	0	0	0	8044	1464	51	5	1014	5	KCNH7	2	163253263	Missense_Mutation	SNP	T	TCGA-BP-5184-01A-01D-1429-08		163253263	79946110	4	24096											
CHRNA1	1134	hgsc.bcm.edu;ucsc.edu	37	2	175614765	175614767	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	-	175614767	AAC	-	175614765	7	5	416	1	0	1	0	1	0	0	0	0	3383	246	9	0	474	0	CHRNA1	2	175614765	In_Frame_Del	DEL	AAC	TCGA-BP-5184-01A-01D-1429-08	12361502	175614765	67584608	5	24097											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188284	10188287	+	Frame_Shift_Del	DEL	GACG	GACG	-	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	GACG	GACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	-	10188287	GACG	-	10188284	7	5	416	1	0	1	0	1	0	0	0	0	17174	1290	45	0	433	0	VHL	3	10188284	Frame_Shift_Del	DEL	GACG	TCGA-BP-5184-01A-01D-1429-08		10188284	187834146	6	24098											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52613123	52613123	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	-	52613123	A	-	52613123	7	5	416	1	0	1	0	1	0	0	0	0	11498	117	5	0	1460	0	PBRM1	3	52613123	Frame_Shift_Del	DEL	A	TCGA-BP-5184-01A-01D-1429-08	42424839	52613123	145409307	7	24099											
THAP9	79725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83839957	83839957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	83839957	T	A	83839957	3	1	416	1	0	0	0	0	1	0	0	0	15863	1403	49	5	2610	5	THAP9	4	83839957	Missense_Mutation	SNP	T	TCGA-BP-5184-01A-01D-1429-08		83839957	107314319	8	24100											
HERC5	51191	broad.mit.edu;hgsc.bcm.edu	37	4	89425491	89425491	+	Silent	SNP	C	C	T	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	T	89425491	C	T	89425491	2	4	416	1	0	0	0	0	0	0	0	1	7068	816	29	2		2	HERC5	4	89425491	Silent	SNP	C	TCGA-BP-5184-01A-01D-1429-08	5585534	89425491	101728785	9	24101											
NRG2	9542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139232130	139232130	+	Silent	SNP	G	G	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	139232130	G	A	139232130	2	1	416	1	0	0	0	0	0	0	0	1	10655	1136	40	1		1	NRG2	5	139232130	Silent	SNP	G	TCGA-BP-5184-01A-01D-1429-08		139232130	41683130	10	24102											
UTRN	7402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	145103091	145103091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	145103091	T	A	145103091	3	1	416	1	0	0	0	0	1	0	0	0	17115	1493	52	5	8904	5	UTRN	6	145103091	Missense_Mutation	SNP	T	TCGA-BP-5184-01A-01D-1429-08		145103091	26011976	11	24103											
UNC93A	54346	broad.mit.edu;ucsc.edu	37	6	167721380	167721380	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	C	167721380	C	C	167721380	3	2	416	1	0	0	0	0	1	0	0	0	17008	1580	55	3	1116	3	UNC93A	6	167721380	Missense_Mutation	SNP	T	TCGA-BP-5184-01A-01D-1429-08	22618289	167721380	3393687	12	24104											
ABCB1	5243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	87183102	87183102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	C	87183102	T	C	87183102	3	2	416	1	0	0	0	0	1	0	0	0	40	1783	62	3	2948	3	ABCB1	7	87183102	Missense_Mutation	SNP	T	TCGA-BP-5184-01A-01D-1429-08		87183102	71955561	13	24105											
CSPP1	79848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	68007701	68007701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	T	68007701	A	T	68007701	3	4	416	1	0	0	0	0	1	0	0	0	3964	40	2	5	819	5	CSPP1	8	68007701	Missense_Mutation	SNP	A	TCGA-BP-5184-01A-01D-1429-08		68007701	78356321	14	24106											
EBAG9	9166	broad.mit.edu;ucsc.edu	37	8	110567065	110567065	+	Silent	SNP	G	A	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	110567065	A	A	110567065	2	1	416	1	0	0	0	0	0	0	0	1	4881	1335	47	2		2	EBAG9	8	110567065	Silent	SNP	G	TCGA-BP-5184-01A-01D-1429-08	42559364	110567065	35796957	15	24107											
TSNARE1	203062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	143412303	143412303	+	Silent	SNP	G	G	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	143412303	G	A	143412303	2	1	416	1	0	0	0	0	0	0	0	1	16642	987	35	2		2	TSNARE1	8	143412303	Silent	SNP	G	TCGA-BP-5184-01A-01D-1429-08	32845238	143412303	2951719	16	24108											
HBB	3043	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5247899	5247899	+	Missense_Mutation	SNP	C	C	A	rs121909804	alternate_allele	TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	5247899	C	A	5247899	3	1	416	1	0	0	0	0	1	0	0	0	6985	594	21	4	228	4	HBB	11	5247899	Missense_Mutation	SNP	C	TCGA-BP-5184-01A-01D-1429-08		5247899	129758617	17	24109											
C11orf2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64875906	64875906	+	Silent	SNP	C	C	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	64875906	C	A	64875906	2	1	416	1	0	0	0	0	0	0	0	1	1635	668	24	4		4	C11orf2	11	64875906	Silent	SNP	C	TCGA-BP-5184-01A-01D-1429-08	59628007	64875906	70130610	18	24110											
PCF11	51585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	82877723	82877723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	G	82877723	A	G	82877723	3	3	416	1	0	0	0	0	1	0	0	0	11580	14	1	3	1802	3	PCF11	11	82877723	Missense_Mutation	SNP	A	TCGA-BP-5184-01A-01D-1429-08	18001817	82877723	52128793	19	24111											
GRIA4	2893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	105842733	105842733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	105842733	G	A	105842733	3	1	416	1	0	0	0	0	1	0	0	0	6777	1174	41	2	2597	2	GRIA4	11	105842733	Missense_Mutation	SNP	G	TCGA-BP-5184-01A-01D-1429-08	22965010	105842733	29163783	20	24112											
FDXACB1	91893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	111749783	111749783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	C	111749783	T	C	111749783	3	2	416	1	0	0	0	0	1	0	0	0	5813	1435	50	3	1820	3	FDXACB1	11	111749783	Missense_Mutation	SNP	T	TCGA-BP-5184-01A-01D-1429-08	5907050	111749783	23256733	21	24113											
NCAPD3	23310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	134062791	134062791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	T	134062791	C	T	134062791	3	4	416	1	0	0	0	0	1	0	0	0	10213	710	25	2	2738	2	NCAPD3	11	134062791	Missense_Mutation	SNP	C	TCGA-BP-5184-01A-01D-1429-08	22313008	134062791	943725	22	24114											
TRPV4	59341	broad.mit.edu;hgsc.bcm.edu	37	12	110226511	110226511	+	Silent	SNP	G	G	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	110226511	G	A	110226511	2	1	416	1	0	0	0	0	0	0	0	1	16610	1219	43	2		2	TRPV4	12	110226511	Silent	SNP	G	TCGA-BP-5184-01A-01D-1429-08		110226511	23625384	23	24115	297	2									
TRPV4	59341	hgsc.bcm.edu	37	12	110226512	110226512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	C	110226512	G	C	110226512	3	2	416	1	0	0	0	0	1	0	0	0	16610	1174	41	4	730	4	TRPV4	12	110226512	Missense_Mutation	SNP	G	TCGA-BP-5184-01A-01D-1429-08	1	110226512	23625383	24	24116	297	2									
ZC3H13	23091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	46584527	46584527	+	Silent	SNP	A	A	G	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	G	46584527	A	G	46584527	2	3	416	1	0	0	0	0	0	0	0	1	17577	446	16	3		3	ZC3H13	13	46584527	Silent	SNP	A	TCGA-BP-5184-01A-01D-1429-08		46584527	68585351	25	24117											
PRKD1	5587	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	30066775	30066775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	30066775	C	A	30066775	3	1	416	1	0	0	0	0	1	0	0	0	12528	913	32	4	394	4	PRKD1	14	30066775	Missense_Mutation	SNP	C	TCGA-BP-5184-01A-01D-1429-08		30066775	77282765	26	24118											
ZNF592	9640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	85326331	85326331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	T	85326331	G	T	85326331	3	4	416	1	0	0	0	0	1	0	0	0	18034	1029	36	4	427	4	ZNF592	15	85326331	Missense_Mutation	SNP	G	TCGA-BP-5184-01A-01D-1429-08		85326331	17205061	27	24119											
ALPK2	115701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	56205081	56205081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	T	56205081	C	T	56205081	3	4	416	1	0	0	0	0	1	0	0	0	545	835	29	2	4210	2	ALPK2	18	56205081	Missense_Mutation	SNP	C	TCGA-BP-5184-01A-01D-1429-08		56205081	21872167	28	24120											
OLFM2	93145	hgsc.bcm.edu;ucsc.edu	37	19	9968474	9968475	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	AT	9968475	-	AT	9968474	7	5	416	1	0	1	1	0	0	0	0	0	10860	478	17	0	1103	0	OLFM2	19	9968474	Frame_Shift_Ins	INS	-	TCGA-BP-5184-01A-01D-1429-08		9968474	49160509	29	24121											
KCNN4	3783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44273604	44273604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	T	44273604	C	T	44273604	3	4	416	1	0	0	0	0	1	0	0	0	8088	768	27	1	256	1	KCNN4	19	44273604	Missense_Mutation	SNP	C	TCGA-BP-5184-01A-01D-1429-08	34305130	44273604	14855379	30	24122											
CDK5RAP1	51654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31946924	31946924	+	Silent	SNP	G	G	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	31946924	G	A	31946924	2	1	416	1	0	0	0	0	0	0	0	1	3147	987	35	2		2	CDK5RAP1	20	31946924	Silent	SNP	G	TCGA-BP-5184-01A-01D-1429-08		31946924	31078596	31	24123											
FGF13	2258	broad.mit.edu;ucsc.edu	37	X	137715047	137715047	+	Silent	SNP	G	A	A	novel		TCGA-BP-5184-01A-01D-1429-08	TCGA-BP-5184-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ddebed14-f47f-46e6-ac39-c74ed3363211	5d1f5125-65c2-4c47-843d-da1c531fdb04	A	137715047	A	A	137715047	2	1	416	1	0	0	0	0	0	0	0	1	5849	1136	40	1		1	FGF13	23	137715047	Silent	SNP	G	TCGA-BP-5184-01A-01D-1429-08		137715047	17555513	32	24124											
EPHA8	2046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22920016	22920016	+	Splice_Site	SNP	G	G	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	22920016	G	C	22920016	5	2	417	1	0	0	0	0	0	0	1	0	5175	1014	35	4	1639	4	EPHA8	1	22920016	Splice_Site	SNP	G	TCGA-BP-5185-01A-01D-1429-08		22920016	226330605	1	24125											
MED18	54797	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	28661113	28661113	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	28661113	T	A	28661113	3	1	417	1	0	0	0	0	1	0	0	0	9443	1522	53	5	265	5	MED18	1	28661113	Missense_Mutation	SNP	T	TCGA-BP-5185-01A-01D-1429-08	5741097	28661113	220589508	2	24126											
RNF19B	127544	broad.mit.edu	37	1	33415334	33415334	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	33415334	G	G	33415334	3	3	417	1	0	0	0	0	1	0	0	0	13484	420	15	3	1579	3	RNF19B	1	33415334	Missense_Mutation	SNP	A	TCGA-BP-5185-01A-01D-1429-08	4754221	33415334	215835287	3	24127											
ATXN7L2	127002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110031529	110031529	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	110031529	G	C	110031529	3	2	417	1	0	0	0	0	1	0	0	0	1217	1261	44	4	870	4	ATXN7L2	1	110031529	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	76616195	110031529	139219092	4	24128											
ZNF687	57592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151259347	151259347	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	151259347	C	G	151259347	3	3	417	1	0	0	0	0	1	0	0	0	18104	855	30	4	582	4	ZNF687	1	151259347	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	41227818	151259347	97991274	5	24129											
FLG	2312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152286259	152286260	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	-	152286260	TG	-	152286259	7	5	417	1	0	1	0	1	0	0	0	0	5929	1580	55	0	11086	0	FLG	1	152286259	Frame_Shift_Del	DEL	TG	TCGA-BP-5185-01A-01D-1429-08	1026912	152286259	96964362	6	24130	298	2									
FLG	2312	hgsc.bcm.edu	37	1	152286260	152286260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	152286260	G	C	152286260	3	2	417	1	0	0	0	0	1	0	0	0	5929	1386	48	4	11087	4	FLG	1	152286260	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	1	152286260	96964361	7	24131	298	2									
UBAP2L	9898	broad.mit.edu;ucsc.edu	37	1	154229659	154229659	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	154229659	C	C	154229659	3	2	417	1	0	0	0	0	1	0	0	0	16850	188	7	5	2348	5	UBAP2L	1	154229659	Missense_Mutation	SNP	A	TCGA-BP-5185-01A-01D-1429-08	1943399	154229659	95020962	8	24132											
CHI3L1	1116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203148901	203148901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	203148901	G	C	203148901	3	2	417	1	0	0	0	0	1	0	0	0	3342	1078	38	4	160	4	CHI3L1	1	203148901	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	48919242	203148901	46101720	9	24133											
MYCN	4613	broad.mit.edu;hgsc.bcm.edu	37	2	16085629	16085629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	16085629	G	A	16085629	3	1	417	1	0	0	0	0	1	0	0	0	10028	1291	45	2	811	2	MYCN	2	16085629	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08		16085629	227113744	10	24134											
PPM1B	5495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44428909	44428909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	44428909	C	A	44428909	3	1	417	1	0	0	0	0	1	0	0	0	12346	536	19	4	573	4	PPM1B	2	44428909	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	28343280	44428909	198770464	11	24135											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141643767	141643767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	141643767	G	A	141643767	3	1	417	1	0	0	0	0	1	0	0	0	8962	1029	36	2	10167	2	LRP1B	2	141643767	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	97214858	141643767	101555606	12	24136											
PKP4	8502	hgsc.bcm.edu;ucsc.edu	37	2	159499100	159499101	+	In_Frame_Ins	INS	-	-	GCAAGT	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	GCAAGT	159499101	-	GCAAGT	159499100	7	5	417	1	0	1	1	0	0	0	0	0	11994	1348	47	0	1836	0	PKP4	2	159499100	In_Frame_Ins	INS	-	TCGA-BP-5185-01A-01D-1429-08	17855333	159499100	83700273	13	24137	299	2									
PKP4	8502	broad.mit.edu;hgsc.bcm.edu	37	2	159499107	159499107	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	159499107	C	G	159499107	3	3	417	1	0	0	0	0	1	0	0	0	11994	913	32	4	1843	4	PKP4	2	159499107	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	7	159499107	83700266	14	24138	299	2									
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179428026	179428026	+	Silent	SNP	T	T	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	179428026	T	C	179428026	2	2	417	1	0	0	0	0	0	0	0	1	16747	1606	56	3		3	TTN	2	179428026	Silent	SNP	T	TCGA-BP-5185-01A-01D-1429-08	19928919	179428026	63771347	15	24139											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179441832	179441832	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	179441832	A	T	179441832	3	4	417	1	0	0	0	0	1	0	0	0	16747	72	3	5	38905	5	TTN	2	179441832	Missense_Mutation	SNP	A	TCGA-BP-5185-01A-01D-1429-08	13806	179441832	63757541	16	24140											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179616303	179616303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	179616303	T	G	179616303	3	3	417	1	0	0	0	0	1	0	0	0	16747	1490	52	5	99473	5	TTN	2	179616303	Missense_Mutation	SNP	T	TCGA-BP-5185-01A-01D-1429-08	174471	179616303	63583070	17	24141											
ZNF804A	91752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	185801058	185801058	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	185801058	G	C	185801058	3	2	417	1	0	0	0	0	1	0	0	0	18182	1319	46	4	949	4	ZNF804A	2	185801058	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	6184755	185801058	57398315	18	24142											
USP40	55230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234431973	234431973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	234431973	C	T	234431973	3	4	417	1	0	0	0	0	1	0	0	0	17084	797	28	2	1734	2	USP40	2	234431973	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	48630915	234431973	8767400	19	24143											
AGAP1	116987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	236706509	236706509	+	Silent	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	236706509	G	A	236706509	2	1	417	1	0	0	0	0	0	0	0	1	366	1364	48	2		2	AGAP1	2	236706509	Silent	SNP	G	TCGA-BP-5185-01A-01D-1429-08	2274536	236706509	6492864	20	24144											
ITIH4	3700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52854657	52854657	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	-	52854657	G	-	52854657	7	5	417	1	0	1	0	1	0	0	0	0	7913	1335	47	0	1016	0	ITIH4	3	52854657	Frame_Shift_Del	DEL	G	TCGA-BP-5185-01A-01D-1429-08		52854657	145167773	21	24145											
NPHP3	27031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	132419270	132419270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	132419270	A	G	132419270	3	3	417	1	0	0	0	0	1	0	0	0	10587	246	9	3	2409	3	NPHP3	3	132419270	Missense_Mutation	SNP	A	TCGA-BP-5185-01A-01D-1429-08	79564613	132419270	65603160	22	24146											
ATR	545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	142184019	142184019	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	142184019	A	T	142184019	3	4	417	1	0	0	0	0	1	0	0	0	1204	43	2	5	1001	5	ATR	3	142184019	Missense_Mutation	SNP	A	TCGA-BP-5185-01A-01D-1429-08	9764749	142184019	55838411	23	24147											
SCD5	79966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83719576	83719576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	83719576	G	A	83719576	3	1	417	1	0	0	0	0	1	0	0	0	13900	1087	38	1	1103	1	SCD5	4	83719576	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08		83719576	107434700	24	24148											
ARFIP1	27236	hgsc.bcm.edu;ucsc.edu	37	4	153831304	153831304	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	-	153831304	T	-	153831304	7	5	417	1	0	1	0	1	0	0	0	0	854	1609	56	0	1085	0	ARFIP1	4	153831304	Frame_Shift_Del	DEL	T	TCGA-BP-5185-01A-01D-1429-08	70111728	153831304	37322972	25	24149											
NAF1	92345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	164050071	164050071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	164050071	G	T	164050071	3	4	417	1	0	0	0	0	1	0	0	0	10147	942	33	4	166	4	NAF1	4	164050071	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	10218767	164050071	27104205	26	24150											
FEM1C	56929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	114878826	114878826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	114878826	G	A	114878826	3	1	417	1	0	0	0	0	1	0	0	0	5818	971	34	2	1496	2	FEM1C	5	114878826	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08		114878826	66036434	27	24151											
AQPEP	206338	broad.mit.edu;ucsc.edu	37	5	115298600	115298600	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	115298600	G	G	115298600	3	3	417	1	0	0	0	0	1	0	0	0	834	796	28	4	288	4	AQPEP	5	115298600	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	419774	115298600	65616660	28	24152											
PCDHAC2	56134	broad.mit.edu;ucsc.edu	37	5	140346845	140346845	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	140346845	A	A	140346845	3	1	417	1	0	0	0	0	1	0	0	0	11540	768	27	4	496	4	PCDHAC2	5	140346845	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	25048245	140346845	40568415	29	24153											
PCDHGB7	56099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140798869	140798869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	140798869	C	G	140798869	3	3	417	1	0	0	0	0	1	0	0	0	11575	883	31	4	1445	4	PCDHGB7	5	140798869	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	452024	140798869	40116391	30	24154											
PCDHGC5	56097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140870296	140870296	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	140870296	C	T	140870296	4	4	417	1	0	0	0	0	0	1	0	0	11578	827	29	2	1491	2	PCDHGC5	5	140870296	Nonsense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	71427	140870296	40044964	31	24155											
MAML1	9794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179193074	179193074	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	179193074	C	G	179193074	3	3	417	1	0	0	0	0	1	0	0	0	9212	643	23	4	1069	4	MAML1	5	179193074	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	38322778	179193074	1722186	32	24156											
CDYL	9425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	4892566	4892566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	4892566	G	A	4892566	3	1	417	1	0	0	0	0	1	0	0	0	3187	1203	42	2	650	2	CDYL	6	4892566	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08		4892566	166222501	33	24157											
HIVEP1	3096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	12164030	12164030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	12164030	T	C	12164030	3	2	417	1	0	0	0	0	1	0	0	0	7193	1493	52	3	7523	3	HIVEP1	6	12164030	Missense_Mutation	SNP	T	TCGA-BP-5185-01A-01D-1429-08	7271464	12164030	158951037	34	24158											
LRP11	84918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	150164137	150164137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	150164137	C	T	150164137	3	4	417	1	0	0	0	0	1	0	0	0	8960	768	27	1	627	1	LRP11	6	150164137	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	138000107	150164137	20950930	35	24159	300	2									
LRP11	84918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	150164138	150164138	+	Silent	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	150164138	G	A	150164138	2	1	417	1	0	0	0	0	0	0	0	1	8960	1074	38	1		1	LRP11	6	150164138	Silent	SNP	G	TCGA-BP-5185-01A-01D-1429-08	1	150164138	20950929	36	24160	300	2									
TULP4	56995	broad.mit.edu	37	6	158923758	158923758	+	Silent	SNP	G	C	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	158923758	C	C	158923758	2	2	417	1	0	0	0	0	0	0	0	1	16788	1219	43	4		4	TULP4	6	158923758	Silent	SNP	G	TCGA-BP-5185-01A-01D-1429-08	8759620	158923758	12191309	37	24161											
FSCN1	6624	broad.mit.edu;hgsc.bcm.edu	37	7	5632742	5632742	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	5632742	G	C	5632742	3	2	417	1	0	0	0	0	1	0	0	0	6074	1203	42	4	177	4	FSCN1	7	5632742	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08		5632742	153505921	38	24162											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82544733	82544733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	82544733	T	C	82544733	3	2	417	1	0	0	0	0	1	0	0	0	11590	1609	56	3	2952	3	PCLO	7	82544733	Missense_Mutation	SNP	T	TCGA-BP-5185-01A-01D-1429-08	76911991	82544733	76593930	39	24163											
CALU	813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	128407619	128407619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	128407619	G	T	128407619	3	4	417	1	0	0	0	0	1	0	0	0	2596	991	35	4	969	4	CALU	7	128407619	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	45862886	128407619	30731044	40	24164											
CPA4	51200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129938646	129938646	+	Silent	SNP	A	A	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	129938646	A	T	129938646	2	4	417	1	0	0	0	0	0	0	0	1	3794	407	15	5		5	CPA4	7	129938646	Silent	SNP	A	TCGA-BP-5185-01A-01D-1429-08	1531027	129938646	29200017	41	24165											
ZC3HAV1	56829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	138794026	138794026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	138794026	C	T	138794026	3	4	417	1	0	0	0	0	1	0	0	0	17587	652	23	1	2712	1	ZC3HAV1	7	138794026	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	8855380	138794026	20344637	42	24166											
INSL6	11172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	5185530	5185530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	5185530	C	T	5185530	3	4	417	1	0	0	0	0	1	0	0	0	7777	884	31	1	576	1	INSL6	9	5185530	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08		5185530	136027901	43	24167											
DDX58	23586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32488009	32488009	+	Silent	SNP	C	C	T	rs151092988		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	32488009	C	T	32488009	2	4	417	1	0	0	0	0	0	0	0	1	4377	523	19	1		1	DDX58	9	32488009	Silent	SNP	C	TCGA-BP-5185-01A-01D-1429-08	27302479	32488009	108725422	44	24168											
ZBTB43	23099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	129595818	129595818	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	-	129595818	G	-	129595818	7	5	417	1	0	1	0	1	0	0	0	0	17556	1087	38	0	1032	0	ZBTB43	9	129595818	Frame_Shift_Del	DEL	G	TCGA-BP-5185-01A-01D-1429-08	97107809	129595818	11617613	45	24169											
QSOX2	169714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139118696	139118696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	139118696	G	A	139118696	3	1	417	1	0	0	0	0	1	0	0	0	12897	1319	46	2	1787	2	QSOX2	9	139118696	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	9522878	139118696	2094735	46	24170											
ARMC4	55130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	28270411	28270411	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	28270411	T	G	28270411	3	3	417	1	0	0	0	0	1	0	0	0	953	1783	62	5	2270	5	ARMC4	10	28270411	Missense_Mutation	SNP	T	TCGA-BP-5185-01A-01D-1429-08		28270411	107264336	47	24171											
GBF1	8729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	104111114	104111114	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	104111114	C	G	104111114	3	3	417	1	0	0	0	0	1	0	0	0	6278	680	24	4	411	4	GBF1	10	104111114	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	75840703	104111114	31423633	48	24172											
OR51Q1	390061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5443672	5443672	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	5443672	C	G	5443672	3	3	417	1	0	0	0	0	1	0	0	0	11111	623	22	4	244	4	OR51Q1	11	5443672	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08		5443672	129562844	49	24173											
DNHD1	144132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6519865	6519865	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	6519865	G	C	6519865	3	2	417	1	0	0	0	0	1	0	0	0	4670	1368	48	4	422	4	DNHD1	11	6519865	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	1076193	6519865	128486651	50	24174											
USH1C	10083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	17531374	17531374	+	Silent	SNP	C	C	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	17531374	C	T	17531374	2	4	417	1	0	0	0	0	0	0	0	1	17046	726	26	2		2	USH1C	11	17531374	Silent	SNP	C	TCGA-BP-5185-01A-01D-1429-08	11011509	17531374	117475142	51	24175											
NUP160	23279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47833875	47833875	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	-	47833875	T	-	47833875	7	5	417	1	0	1	0	1	0	0	0	0	10764	1493	52	0	2335	0	NUP160	11	47833875	Frame_Shift_Del	DEL	T	TCGA-BP-5185-01A-01D-1429-08	30302501	47833875	87172641	52	24176											
MYO7A	4647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	76893001	76893001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	76893001	T	G	76893001	3	3	417	1	0	0	0	0	1	0	0	0	10089	1580	55	5	2999	5	MYO7A	11	76893001	Missense_Mutation	SNP	T	TCGA-BP-5185-01A-01D-1429-08	29059126	76893001	58113515	53	24177											
ARHGAP20	57569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	110451607	110451607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	110451607	G	T	110451607	3	4	417	1	0	0	0	0	1	0	0	0	870	1377	48	4	1516	4	ARHGAP20	11	110451607	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	33558606	110451607	24554909	54	24178											
FOXR1	283150	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118849549	118849549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	118849549	C	T	118849549	3	4	417	1	0	0	0	0	1	0	0	0	6038	623	22	2	125	2	FOXR1	11	118849549	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	8397942	118849549	16156967	55	24179	301	2									
FOXR1	283150	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118849551	118849551	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	118849551	A	T	118849551	3	4	417	1	0	0	0	0	1	0	0	0	6038	130	5	5	127	5	FOXR1	11	118849551	Missense_Mutation	SNP	A	TCGA-BP-5185-01A-01D-1429-08	2	118849551	16156965	56	24180	301	2									
TNFRSF1A	7132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6440021	6440021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	6440021	G	A	6440021	3	1	417	1	0	0	0	0	1	0	0	0	16305	1294	45	2	764	2	TNFRSF1A	12	6440021	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08		6440021	127411874	57	24181											
KLRC2	3822	broad.mit.edu;hgsc.bcm.edu	37	12	10584769	10584769	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	10584769	C	G	10584769	3	3	417	1	0	0	0	0	1	0	0	0	8423	594	21	4	183	4	KLRC2	12	10584769	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	4144748	10584769	123267126	58	24182											
AVIL	10677	broad.mit.edu;hgsc.bcm.edu	37	12	58207208	58207208	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	58207208	T	C	58207208	5	2	417	1	0	0	0	0	0	0	1	0	1227	1594	55	3	2387	3	AVIL	12	58207208	Splice_Site	SNP	T	TCGA-BP-5185-01A-01D-1429-08	47622439	58207208	75644687	59	24183											
FAM71C	196472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100042363	100042363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	100042363	G	T	100042363	3	4	417	1	0	0	0	0	1	0	0	0	5616	962	34	4	413	4	FAM71C	12	100042363	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	41835155	100042363	33809532	60	24184											
DDX54	79039	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113618759	113618759	+	Silent	SNP	C	C	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	113618759	C	T	113618759	2	4	417	1	0	0	0	0	0	0	0	1	4374	912	32	2		2	DDX54	12	113618759	Silent	SNP	C	TCGA-BP-5185-01A-01D-1429-08	13576396	113618759	20233136	61	24185											
CDK8	1024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	26923220	26923220	+	Silent	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	26923220	G	A	26923220	2	1	417	1	0	0	0	0	0	0	0	1	3152	962	34	2		2	CDK8	13	26923220	Silent	SNP	G	TCGA-BP-5185-01A-01D-1429-08		26923220	88246658	62	24186											
KBTBD6	89890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	41704758	41704758	+	Silent	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	41704758	G	A	41704758	2	1	417	1	0	0	0	0	0	0	0	1	8004	1277	45	2		2	KBTBD6	13	41704758	Silent	SNP	G	TCGA-BP-5185-01A-01D-1429-08	14781538	41704758	73465120	63	24187											
CKAP2	26586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	53035798	53035798	+	Silent	SNP	A	A	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	53035798	A	T	53035798	2	4	417	1	0	0	0	0	0	0	0	1	3444	117	5	5		5	CKAP2	13	53035798	Silent	SNP	A	TCGA-BP-5185-01A-01D-1429-08	11331040	53035798	62134080	64	24188											
DAAM1	23002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	59834206	59834206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	59834206	C	A	59834206	3	1	417	1	0	0	0	0	1	0	0	0	4217	912	32	4	3010	4	DAAM1	14	59834206	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08		59834206	47515334	65	24189											
APBA2	321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	29400578	29400578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	29400578	G	A	29400578	3	1	417	1	0	0	0	0	1	0	0	0	757	1145	40	1	2061	1	APBA2	15	29400578	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08		29400578	73130814	66	24190											
RTF1	23168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41762545	41762545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	41762545	A	G	41762545	3	3	417	1	0	0	0	0	1	0	0	0	13734	72	3	3	1006	3	RTF1	15	41762545	Missense_Mutation	SNP	A	TCGA-BP-5185-01A-01D-1429-08	12361967	41762545	60768847	67	24191											
DENND4A	10260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65959941	65959942	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	-	65959942	TC	-	65959941	7	5	417	1	0	1	0	1	0	0	0	0	4435	1783	62	0	656	0	DENND4A	15	65959941	Frame_Shift_Del	DEL	TC	TCGA-BP-5185-01A-01D-1429-08	24197396	65959941	36571451	68	24192											
PGPEP1L	145814	broad.mit.edu;hgsc.bcm.edu	37	15	99511854	99511854	+	Silent	SNP	A	A	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	99511854	A	T	99511854	2	4	417	1	0	0	0	0	0	0	0	1	11811	291	11	5		5	PGPEP1L	15	99511854	Silent	SNP	A	TCGA-BP-5185-01A-01D-1429-08	33551913	99511854	3019538	69	24193											
CNOT1	23019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58594198	58594198	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	58594198	T	G	58594198	3	3	417	1	0	0	0	0	1	0	0	0	3619	1609	56	5	5436	5	CNOT1	16	58594198	Missense_Mutation	SNP	T	TCGA-BP-5185-01A-01D-1429-08		58594198	31760555	70	24194											
SNAI3	333929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	88744902	88744902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	88744902	G	A	88744902	3	1	417	1	0	0	0	0	1	0	0	0	14841	1174	41	2	49	2	SNAI3	16	88744902	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08	30150704	88744902	1609851	71	24195											
SPAG5	10615	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26920003	26920003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	26920003	A	G	26920003	3	3	417	1	0	0	0	0	1	0	0	0	14994	304	11	3	3410	3	SPAG5	17	26920003	Missense_Mutation	SNP	A	TCGA-BP-5185-01A-01D-1429-08		26920003	54275207	72	24196											
KRTAP4-12	83755	broad.mit.edu;hgsc.bcm.edu	37	17	39279933	39279933	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	39279933	A	T	39279933	3	4	417	1	0	0	0	0	1	0	0	0	8557	304	11	5	167	5	KRTAP4-12	17	39279933	Missense_Mutation	SNP	A	TCGA-BP-5185-01A-01D-1429-08	12359930	39279933	41915277	73	24197											
MED13	9969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	60038959	60038959	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	60038959	C	G	60038959	3	3	417	1	0	0	0	0	1	0	0	0	9437	913	32	4	1314	4	MED13	17	60038959	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	20759026	60038959	21156251	74	24198											
SOX9	6662	broad.mit.edu;ucsc.edu	37	17	70119068	70119068	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	70119068	C	C	70119068	3	2	417	1	0	0	0	0	1	0	0	0	14971	1551	54	3	646	3	SOX9	17	70119068	Missense_Mutation	SNP	T	TCGA-BP-5185-01A-01D-1429-08	10080109	70119068	11076142	75	24199											
UNK	85451	broad.mit.edu;hgsc.bcm.edu	37	17	73814848	73814848	+	Silent	SNP	A	A	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	73814848	A	C	73814848	2	2	417	1	0	0	0	0	0	0	0	1	17012	117	5	5		5	UNK	17	73814848	Silent	SNP	A	TCGA-BP-5185-01A-01D-1429-08	3695780	73814848	7380362	76	24200											
EXOC7	23265	broad.mit.edu;hgsc.bcm.edu	37	17	74077512	74077512	+	RNA	SNP	A	A	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	74077512	A	G	74077512	1	3	417	0	1	0	0	0	0	0	0	0	5312	319	11	3		3	EXOC7	17	74077512	RNA	SNP	A	TCGA-BP-5185-01A-01D-1429-08	262664	74077512	7117698	77	24201											
ANKRD12	23253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	9256041	9256042	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	-	9256042	AA	-	9256041	7	5	417	1	0	1	0	1	0	0	0	0	640	131	5	0	2806	0	ANKRD12	18	9256041	Frame_Shift_Del	DEL	AA	TCGA-BP-5185-01A-01D-1429-08		9256041	68821207	78	24202											
KIAA1468	57614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	59949659	59949659	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	G	59949659	C	G	59949659	3	3	417	1	0	0	0	0	1	0	0	0	8243	507	18	4	3333	4	KIAA1468	18	59949659	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	50693618	59949659	18127589	79	24203											
FBN3	84467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8175825	8175825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	8175825	G	A	8175825	3	1	417	1	0	0	0	0	1	0	0	0	5711	1000	35	2	4316	2	FBN3	19	8175825	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08		8175825	50953158	80	24204											
NLRP12	91662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54313706	54313706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	54313706	C	A	54313706	3	1	417	1	0	0	0	0	1	0	0	0	10481	536	19	4	2106	4	NLRP12	19	54313706	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	46137881	54313706	4815277	81	24205	302	2									
NLRP12	91662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54313711	54313711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	T	54313711	C	T	54313711	3	4	417	1	0	0	0	0	1	0	0	0	10481	710	25	2	2111	2	NLRP12	19	54313711	Missense_Mutation	SNP	C	TCGA-BP-5185-01A-01D-1429-08	5	54313711	4815272	82	24206	302	2									
CLDN14	23562	hgsc.bcm.edu;ucsc.edu	37	21	37833694	37833694	+	Silent	SNP	G	G	A	rs113350364	bycluster;byfrequency;by1000genomes	TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	37833694	G	A	37833694	2	1	417	1	0	0	0	0	0	0	0	1	3477	1048	37	1		1	CLDN14	21	37833694	Silent	SNP	G	TCGA-BP-5185-01A-01D-1429-08		37833694	10296201	83	24207											
CABIN1	23523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24463082	24463082	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	C	24463082	G	C	24463082	3	2	417	1	0	0	0	0	1	0	0	0	2530	1175	41	4	2240	4	CABIN1	22	24463082	Missense_Mutation	SNP	G	TCGA-BP-5185-01A-01D-1429-08		24463082	26841484	84	24208											
GAL3ST1	9514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30952062	30952062	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	-	30952062	C	-	30952062	7	5	417	1	0	1	0	1	0	0	0	0	6204	523	19	0	1125	0	GAL3ST1	22	30952062	Frame_Shift_Del	DEL	C	TCGA-BP-5185-01A-01D-1429-08	6488980	30952062	20352504	85	24209											
EIF4ENIF1	56478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	31850208	31850208	+	Silent	SNP	G	G	A	novel		TCGA-BP-5185-01A-01D-1429-08	TCGA-BP-5185-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42dc6d82-f52a-4b13-b3bc-c63002b47e98	b196abf3-5cdd-43a6-9891-67410109b05a	A	31850208	G	A	31850208	2	1	417	1	0	0	0	0	0	0	0	1	5037	1136	40	1		1	EIF4ENIF1	22	31850208	Silent	SNP	G	TCGA-BP-5185-01A-01D-1429-08	898146	31850208	19454358	86	24210											
INPP5B	3633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	38343913	38343913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	C	38343913	T	C	38343913	3	2	418	1	0	0	0	0	1	0	0	0	7762	1464	51	3	1153	3	INPP5B	1	38343913	Missense_Mutation	SNP	T	TCGA-BP-5186-01A-01D-1429-08		38343913	210906708	1	24211											
PRG4	23572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186278973	186278973	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	186278973	T	A	186278973	4	1	418	1	0	0	0	0	0	1	0	0	12491	1821	63	5	3496	5	PRG4	1	186278973	Nonsense_Mutation	SNP	T	TCGA-BP-5186-01A-01D-1429-08	147935060	186278973	62971648	2	24212											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201017771	201017771	+	Silent	SNP	T	T	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	201017771	T	A	201017771	2	1	418	1	0	0	0	0	0	0	0	1	2549	1567	55	5		5	CACNA1S	1	201017771	Silent	SNP	T	TCGA-BP-5186-01A-01D-1429-08	14738798	201017771	48232850	3	24213											
PLEKHH2	130271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	43934682	43934682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	43934682	G	A	43934682	3	1	418	1	0	0	0	0	1	0	0	0	12084	1058	37	1	2002	1	PLEKHH2	2	43934682	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08		43934682	199264691	4	24214											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188320	10188324	+	Frame_Shift_Del	DEL	GGTAC	GGTAC	-	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	GGTAC	GGTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	-	10188324	GGTAC	-	10188320	7	5	418	1	0	1	0	1	0	0	0	0	17174	1014	35	0	469	0	VHL	3	10188320	Frame_Shift_Del	DEL	GGTAC	TCGA-BP-5186-01A-01D-1429-08		10188320	187834110	5	24215											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52610643	52610643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	T	52610643	G	T	52610643	3	4	418	1	0	0	0	0	1	0	0	0	11498	1377	48	4	1331	4	PBRM1	3	52610643	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08	42422323	52610643	145411787	6	24216											
ADAMTS9	56999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	64619448	64619448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	T	64619448	G	T	64619448	3	4	418	1	0	0	0	0	1	0	0	0	273	971	34	4	3951	4	ADAMTS9	3	64619448	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08	12008805	64619448	133402982	7	24217											
SPARCL1	8404	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	88394938	88394938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	C	88394938	G	C	88394938	3	2	418	1	0	0	0	0	1	0	0	0	15008	942	33	4	14	4	SPARCL1	4	88394938	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08		88394938	102759338	8	24218											
GRID2	2895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	94693413	94693413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	T	94693413	A	T	94693413	3	4	418	1	0	0	0	0	1	0	0	0	6779	43	2	5	2850	5	GRID2	4	94693413	Missense_Mutation	SNP	A	TCGA-BP-5186-01A-01D-1429-08	6298475	94693413	96460863	9	24219											
ANKRA2	57763	broad.mit.edu;hgsc.bcm.edu	37	5	72849308	72849308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	72849308	C	A	72849308	3	1	418	1	0	0	0	0	1	0	0	0	636	565	20	4	140	4	ANKRA2	5	72849308	Missense_Mutation	SNP	C	TCGA-BP-5186-01A-01D-1429-08		72849308	108065952	10	24220											
COL11A2	1302	hgsc.bcm.edu	37	6	33156155	33156155	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	-	33156155	T	-	33156155	7	5	418	1	0	1	0	1	0	0	0	0	3670	1435	50	0	4947	0	COL11A2	6	33156155	Frame_Shift_Del	DEL	T	TCGA-BP-5186-01A-01D-1429-08		33156155	137958912	11	24221											
SSPO	23145	broad.mit.edu;hgsc.bcm.edu	37	7	149486417	149486417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	G	149486417	C	G	149486417	3	3	418	1	0	0	0	0	1	0	0	0	15201	680	24	4	4507	4	SSPO	7	149486417	Missense_Mutation	SNP	C	TCGA-BP-5186-01A-01D-1429-08		149486417	9652246	12	24222											
PIWIL2	55124	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	22167480	22167480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	22167480	G	A	22167480	3	1	418	1	0	0	0	0	1	0	0	0	11965	1001	35	2	1747	2	PIWIL2	8	22167480	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08		22167480	124196542	13	24223											
IKBKAP	8518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	111659236	111659236	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	111659236	G	A	111659236	4	1	418	1	0	0	0	0	0	1	0	0	7617	1299	45	2	1470	2	IKBKAP	9	111659236	Nonsense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08		111659236	29554195	14	24224											
ZFP37	7539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	115818875	115818875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	T	115818875	G	T	115818875	3	4	418	1	0	0	0	0	1	0	0	0	17660	1020	36	4	1814	4	ZFP37	9	115818875	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08	4159639	115818875	25394556	15	24225											
NMT2	9397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	15151770	15151770	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	T	15151770	A	T	15151770	3	4	418	1	0	0	0	0	1	0	0	0	10511	127	5	5	97	5	NMT2	10	15151770	Missense_Mutation	SNP	A	TCGA-BP-5186-01A-01D-1429-08		15151770	120382977	16	24226											
MICALCL	84953	broad.mit.edu;ucsc.edu	37	11	12316166	12316166	+	Silent	SNP	T	G	G	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	G	12316166	G	G	12316166	2	3	418	1	0	0	0	0	0	0	0	1	9579	1828	64	5		5	MICALCL	11	12316166	Silent	SNP	T	TCGA-BP-5186-01A-01D-1429-08		12316166	122690350	17	24227											
KDM4D	55693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	94731985	94731985	+	Silent	SNP	T	T	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	94731985	T	A	94731985	2	1	418	1	0	0	0	0	0	0	0	1	8138	1596	56	5		5	KDM4D	11	94731985	Silent	SNP	T	TCGA-BP-5186-01A-01D-1429-08	82415819	94731985	40274531	18	24228											
ST14	6768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	130066577	130066577	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	130066577	T	A	130066577	3	1	418	1	0	0	0	0	1	0	0	0	15223	1551	54	5	1378	5	ST14	11	130066577	Missense_Mutation	SNP	T	TCGA-BP-5186-01A-01D-1429-08	35334592	130066577	4939939	19	24229											
EMG1	10436	hgsc.bcm.edu	37	12	7080210	7080211	+	Frame_Shift_Ins	INS	-	-	G	rs113953006	bycluster;by1000genomes	TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	G	7080211	-	G	7080210	7	5	418	1	0	1	1	0	0	0	0	0	5092	420	15	0	126	0	EMG1	12	7080210	Frame_Shift_Ins	INS	-	TCGA-BP-5186-01A-01D-1429-08		7080210	126771685	20	24230											
FZD10	11211	broad.mit.edu;hgsc.bcm.edu	37	12	130648146	130648146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	130648146	G	A	130648146	3	1	418	1	0	0	0	0	1	0	0	0	6136	971	34	2	661	2	FZD10	12	130648146	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08	123567936	130648146	3203749	21	24231											
CSNK1A1L	122011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	37678647	37678647	+	Silent	SNP	A	A	G	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	G	37678647	A	G	37678647	2	3	418	1	0	0	0	0	0	0	0	1	3953	389	14	3		3	CSNK1A1L	13	37678647	Silent	SNP	A	TCGA-BP-5186-01A-01D-1429-08		37678647	77491231	22	24232											
DACT1	51339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	59113389	59113389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	59113389	C	A	59113389	3	1	418	1	0	0	0	0	1	0	0	0	4224	739	26	4	2062	4	DACT1	14	59113389	Missense_Mutation	SNP	C	TCGA-BP-5186-01A-01D-1429-08		59113389	48236151	23	24233											
SIX1	6495	hgsc.bcm.edu	37	14	61113204	61113204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	T	61113204	C	T	61113204	3	4	418	1	0	0	0	0	1	0	0	0	14359	922	32	2	206	2	SIX1	14	61113204	Missense_Mutation	SNP	C	TCGA-BP-5186-01A-01D-1429-08	1999815	61113204	46236336	24	24234											
ACACA	31	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	35545400	35545400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	T	35545400	G	T	35545400	3	4	418	1	0	0	0	0	1	0	0	0	106	1310	46	4	2630	4	ACACA	17	35545400	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08		35545400	45649810	25	24235											
KRTAP4-9	100132386	broad.mit.edu	37	17	39261865	39261865	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	39261865	A	A	39261865	4	1	418	1	0	0	0	0	0	1	0	0	8564	718	25	4	227	4	KRTAP4-9	17	39261865	Nonsense_Mutation	SNP	C	TCGA-BP-5186-01A-01D-1429-08	3716465	39261865	41933345	26	24236											
ATG4D	84971	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10663721	10663721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	10663721	C	A	10663721	3	1	418	1	0	0	0	0	1	0	0	0	1099	913	32	4	1441	4	ATG4D	19	10663721	Missense_Mutation	SNP	C	TCGA-BP-5186-01A-01D-1429-08		10663721	48465262	27	24237											
FCGBP	8857	broad.mit.edu;hgsc.bcm.edu	37	19	40420153	40420153	+	Silent	SNP	G	G	C	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	C	40420153	G	C	40420153	2	2	418	1	0	0	0	0	0	0	0	1	5785	1161	41	4		4	FCGBP	19	40420153	Silent	SNP	G	TCGA-BP-5186-01A-01D-1429-08	29756432	40420153	18708830	28	24238											
CLPTM1	1209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45465320	45465320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	45465320	G	A	45465320	3	1	418	1	0	0	0	0	1	0	0	0	3556	1261	44	2	179	2	CLPTM1	19	45465320	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08	5045167	45465320	13663663	29	24239											
SLC1A5	6510	broad.mit.edu;hgsc.bcm.edu	37	19	47285647	47285647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	C	47285647	T	C	47285647	3	2	418	1	0	0	0	0	1	0	0	0	14448	1435	50	3	828	3	SLC1A5	19	47285647	Missense_Mutation	SNP	T	TCGA-BP-5186-01A-01D-1429-08	1820327	47285647	11843336	30	24240											
RIN2	54453	hgsc.bcm.edu;ucsc.edu	37	20	19955468	19955468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	T	19955468	G	T	19955468	3	4	418	1	0	0	0	0	1	0	0	0	13385	1116	39	4	825	4	RIN2	20	19955468	Missense_Mutation	SNP	G	TCGA-BP-5186-01A-01D-1429-08		19955468	43070052	31	24241											
ZMYND8	23613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	45853096	45853096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	C	45853096	T	C	45853096	3	2	418	1	0	0	0	0	1	0	0	0	17723	1792	62	3	594	3	ZMYND8	20	45853096	Missense_Mutation	SNP	T	TCGA-BP-5186-01A-01D-1429-08	25897628	45853096	17172424	32	24242											
NUP50	10762	broad.mit.edu;hgsc.bcm.edu	37	22	45574718	45574718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	G	45574718	T	G	45574718	3	3	418	1	0	0	0	0	1	0	0	0	10773	1551	54	5	954	5	NUP50	22	45574718	Missense_Mutation	SNP	T	TCGA-BP-5186-01A-01D-1429-08		45574718	5729848	33	24243											
USP51	158880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	55513238	55513238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	A	55513238	T	A	55513238	3	1	418	1	0	0	0	0	1	0	0	0	17095	1535	53	5	4	5	USP51	23	55513238	Missense_Mutation	SNP	T	TCGA-BP-5186-01A-01D-1429-08		55513238	99757322	34	24244											
SLC10A3	8273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153716013	153716013	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5186-01A-01D-1429-08	TCGA-BP-5186-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02b98f85-07df-4fb2-b27e-efd368c84ec8	f874ff04-d379-4de4-9a87-c04c045a70ca	G	153716013	C	G	153716013	3	3	418	1	0	0	0	0	1	0	0	0	14388	507	18	4	170	4	SLC10A3	23	153716013	Missense_Mutation	SNP	C	TCGA-BP-5186-01A-01D-1429-08	98202775	153716013	1554547	35	24245											
ALPL	249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	21903878	21903878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	21903878	C	T	21903878	3	4	419	1	0	0	0	0	1	0	0	0	547	826	29	2	1354	2	ALPL	1	21903878	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08		21903878	227346743	1	24246											
BSND	7809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55474113	55474113	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	55474113	T	A	55474113	3	1	419	1	0	0	0	0	1	0	0	0	1533	1696	59	5	789	5	BSND	1	55474113	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08	33570235	55474113	193776508	2	24247											
CLCC1	23155	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109477333	109477333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	109477333	C	T	109477333	3	4	419	1	0	0	0	0	1	0	0	0	3462	603	21	2	44	2	CLCC1	1	109477333	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	54003220	109477333	139773288	3	24248											
DENND4B	9909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153916542	153916542	+	Silent	SNP	A	A	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	153916542	A	T	153916542	2	4	419	1	0	0	0	0	0	0	0	1	4436	117	5	5		5	DENND4B	1	153916542	Silent	SNP	A	TCGA-BP-5187-01A-01D-1429-08	44439209	153916542	95334079	4	24249											
IQGAP3	128239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156498730	156498730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	156498730	C	T	156498730	3	4	419	1	0	0	0	0	1	0	0	0	7823	855	30	2	362	2	IQGAP3	1	156498730	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	2582188	156498730	92751891	5	24250											
FMO2	2327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	171173043	171173043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	171173043	C	A	171173043	3	1	419	1	0	0	0	0	1	0	0	0	5962	652	23	4	685	4	FMO2	1	171173043	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	14674313	171173043	78077578	6	24251											
THADA	63892	broad.mit.edu	37	2	43571338	43571338	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	43571338	C	C	43571338	3	2	419	1	0	0	0	0	1	0	0	0	15852	1136	40	4	1631	4	THADA	2	43571338	Missense_Mutation	SNP	G	TCGA-BP-5187-01A-01D-1429-08		43571338	199628035	7	24252											
TTC7A	57217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	47221561	47221561	+	Silent	SNP	C	C	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	47221561	C	A	47221561	2	1	419	1	0	0	0	0	0	0	0	1	16724	610	22	4		4	TTC7A	2	47221561	Silent	SNP	C	TCGA-BP-5187-01A-01D-1429-08	3650223	47221561	195977812	8	24253											
SUCLG1	8802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	84652566	84652566	+	Silent	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	84652566	A	G	84652566	2	3	419	1	0	0	0	0	0	0	0	1	15376	175	7	3		3	SUCLG1	2	84652566	Silent	SNP	A	TCGA-BP-5187-01A-01D-1429-08	37431005	84652566	158546807	9	24254											
SLC4A10	57282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	162815017	162815017	+	Silent	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	162815017	A	G	162815017	2	3	419	1	0	0	0	0	0	0	0	1	14664	436	16	3		3	SLC4A10	2	162815017	Silent	SNP	A	TCGA-BP-5187-01A-01D-1429-08	78162451	162815017	80384356	10	24255											
RFTN2	130132	broad.mit.edu	37	2	198508984	198508984	+	Silent	SNP	C	T	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	198508984	T	T	198508984	2	4	419	1	0	0	0	0	0	0	0	1	13272	639	23	1		1	RFTN2	2	198508984	Silent	SNP	C	TCGA-BP-5187-01A-01D-1429-08	35693967	198508984	44690389	11	24256											
SAG	6295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234237149	234237149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	234237149	A	G	234237149	3	3	419	1	0	0	0	0	1	0	0	0	13821	131	5	3	564	3	SAG	2	234237149	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08	35728165	234237149	8962224	12	24257											
ATG7	10533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	11348441	11348441	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	11348441	C	A	11348441	4	1	419	1	0	0	0	0	0	1	0	0	1101	805	28	4	250	4	ATG7	3	11348441	Nonsense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08		11348441	186673989	13	24258											
FBLN2	2199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	13659663	13659663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	13659663	A	T	13659663	3	4	419	1	0	0	0	0	1	0	0	0	5706	333	12	5	525	5	FBLN2	3	13659663	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08	2311222	13659663	184362767	14	24259											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643768	52643768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	52643768	G	A	52643768	4	1	419	1	0	0	0	0	0	1	0	0	11498	1066	37	1	2832	1	PBRM1	3	52643768	Nonsense_Mutation	SNP	G	TCGA-BP-5187-01A-01D-1429-08	38984105	52643768	145378662	15	24260											
MUC4	4585	broad.mit.edu	37	3	195505876	195505876	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	195505876	C	C	195505876	3	2	419	1	0	0	0	0	1	0	0	0	9985	1000	35	4		4	MUC4	3	195505876	Missense_Mutation	SNP	G	TCGA-BP-5187-01A-01D-1429-08	142862108	195505876	2516554	16	24261											
CCKAR	886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	26487295	26487295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	26487295	C	T	26487295	3	4	419	1	0	0	0	0	1	0	0	0	2882	768	27	1	708	1	CCKAR	4	26487295	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08		26487295	164666981	17	24262											
C4orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	184629723	184629723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	184629723	T	C	184629723	3	2	419	1	0	0	0	0	1	0	0	0	2272	1676	58	3	3463	3	C4orf41	4	184629723	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08	158142428	184629723	6524553	18	24263											
PPIC	5480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	122359616	122359616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	122359616	T	A	122359616	3	1	419	1	0	0	0	0	1	0	0	0	12330	1609	56	5	49	5	PPIC	5	122359616	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08		122359616	58555644	19	24264											
SIL1	64374	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	138378410	138378410	+	Splice_Site	SNP	T	T	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	138378410	T	A	138378410	5	1	419	1	0	0	0	0	0	0	1	0	14334	1594	55	5	1057	5	SIL1	5	138378410	Splice_Site	SNP	T	TCGA-BP-5187-01A-01D-1429-08	16018794	138378410	42536850	20	24265											
SLU7	10569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	159835383	159835383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	159835383	T	C	159835383	3	2	419	1	0	0	0	0	1	0	0	0	14768	1559	54	3	1024	3	SLU7	5	159835383	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08	21456973	159835383	21079877	21	24266											
UNC5A	90249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176295140	176295140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	176295140	C	A	176295140	3	1	419	1	0	0	0	0	1	0	0	0	17003	507	18	4	312	4	UNC5A	5	176295140	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	16459757	176295140	4620120	22	24267											
HLA-E	3133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	30457321	30457321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	30457321	A	G	30457321	3	3	419	1	0	0	0	0	1	0	0	0	7217	43	2	3	15	3	HLA-E	6	30457321	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08		30457321	140657746	23	24268											
GRM4	2914	broad.mit.edu	37	6	34100855	34100855	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	34100855	T	T	34100855	3	4	419	1	0	0	0	0	1	0	0	0	6806	739	26	2	2359	2	GRM4	6	34100855	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	3643534	34100855	137014212	24	24269											
DSE	29940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	116752301	116752301	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	116752301	T	A	116752301	3	1	419	1	0	0	0	0	1	0	0	0	4776	1809	63	5	865	5	DSE	6	116752301	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08	82651446	116752301	54362766	25	24270											
POR	5447	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	75611556	75611556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	75611556	A	G	75611556	3	3	419	1	0	0	0	0	1	0	0	0	12264	304	11	3	772	3	POR	7	75611556	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08		75611556	83527107	26	24271											
MCM7	4176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99697218	99697218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	99697218	C	A	99697218	3	1	419	1	0	0	0	0	1	0	0	0	9399	912	32	4	1941	4	MCM7	7	99697218	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	24085662	99697218	59441445	27	24272											
ACO1	48	broad.mit.edu	37	9	32434667	32434667	+	Silent	SNP	C	T	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	32434667	T	T	32434667	2	4	419	1	0	0	0	0	0	0	0	1	146	477	17	2		2	ACO1	9	32434667	Silent	SNP	C	TCGA-BP-5187-01A-01D-1429-08		32434667	108778764	28	24273											
S1PR3	1903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	91616543	91616543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	91616543	T	C	91616543	3	2	419	1	0	0	0	0	1	0	0	0	13808	1464	51	3	430	3	S1PR3	9	91616543	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08	59181876	91616543	49596888	29	24274											
TEX10	54881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	103109629	103109629	+	Silent	SNP	T	T	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	103109629	T	G	103109629	2	3	419	1	0	0	0	0	0	0	0	1	15784	1654	58	5		5	TEX10	9	103109629	Silent	SNP	T	TCGA-BP-5187-01A-01D-1429-08	11493086	103109629	38103802	30	24275											
TOR2A	27433	hgsc.bcm.edu	37	9	130495610	130495610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	130495610	T	C	130495610	3	2	419	1	0	0	0	0	1	0	0	0	16387	1580	55	3	499	3	TOR2A	9	130495610	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08	27385981	130495610	10717821	31	24276											
GPR158	57512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	25887644	25887644	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	25887644	C	G	25887644	3	3	419	1	0	0	0	0	1	0	0	0	6670	913	32	4	3131	4	GPR158	10	25887644	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08		25887644	109647103	32	24277											
CTNNA3	29119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	68139003	68139003	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	68139003	C	G	68139003	3	3	419	1	0	0	0	0	1	0	0	0	4016	565	20	4	1076	4	CTNNA3	10	68139003	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	42251359	68139003	67395744	33	24278											
CCNJ	54619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	97816869	97816869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	97816869	C	T	97816869	3	4	419	1	0	0	0	0	1	0	0	0	2930	681	24	2	619	2	CCNJ	10	97816869	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	29677866	97816869	37717878	34	24279											
PRMT3	10196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	20486044	20486044	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	20486044	A	C	20486044	3	2	419	1	0	0	0	0	1	0	0	0	12548	98	4	5	1349	5	PRMT3	11	20486044	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08		20486044	114520472	35	24280	303	2									
PRMT3	10196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	20486049	20486049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	20486049	C	T	20486049	3	4	419	1	0	0	0	0	1	0	0	0	12548	838	29	2	1354	2	PRMT3	11	20486049	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	5	20486049	114520467	36	24281	303	2									
CTNND1	1500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57573353	57573353	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	57573353	G	A	57573353	5	1	419	1	0	0	0	0	0	0	1	0	4021	985	34	2	1752	2	CTNND1	11	57573353	Splice_Site	SNP	G	TCGA-BP-5187-01A-01D-1429-08	37087304	57573353	77433163	37	24282											
MAML2	84441	broad.mit.edu;hgsc.bcm.edu	37	11	95825502	95825502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	95825502	C	T	95825502	3	4	419	1	0	0	0	0	1	0	0	0	9213	913	32	2	1793	2	MAML2	11	95825502	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	38252149	95825502	39181014	38	24283											
ADAMTS20	80070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	43862444	43862444	+	Silent	SNP	T	T	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	43862444	T	G	43862444	2	3	419	1	0	0	0	0	0	0	0	1	266	1654	58	5		5	ADAMTS20	12	43862444	Silent	SNP	T	TCGA-BP-5187-01A-01D-1429-08		43862444	89989451	39	24284											
BBS10	79738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	76741471	76741471	+	Silent	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	76741471	A	G	76741471	2	3	419	1	0	0	0	0	0	0	0	1	1336	214	8	3		3	BBS10	12	76741471	Silent	SNP	A	TCGA-BP-5187-01A-01D-1429-08	32879027	76741471	57110424	40	24285											
KIAA1033	23325	broad.mit.edu;hgsc.bcm.edu	37	12	105537004	105537004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	105537004	A	G	105537004	3	3	419	1	0	0	0	0	1	0	0	0	8213	449	16	3	2071	3	KIAA1033	12	105537004	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08	28795533	105537004	28314891	41	24286											
N4BP2L2	10443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33110645	33110645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	33110645	G	T	33110645	3	4	419	1	0	0	0	0	1	0	0	0	10119	1357	47	4	3112	4	N4BP2L2	13	33110645	Missense_Mutation	SNP	G	TCGA-BP-5187-01A-01D-1429-08		33110645	82059233	42	24287											
C14orf106	0	hgsc.bcm.edu	37	14	45716018	45716019	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	45716019	-	T	45716018	7	5	419	1	0	1	1	0	0	0	0	0	1740	98	4	0	2990	0	C14orf106	14	45716018	Frame_Shift_Ins	INS	-	TCGA-BP-5187-01A-01D-1429-08		45716018	61633522	43	24288											
MPP5	64398	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	67779288	67779288	+	Silent	SNP	T	T	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	67779288	T	C	67779288	2	2	419	1	0	0	0	0	0	0	0	1	9744	1596	56	3		3	MPP5	14	67779288	Silent	SNP	T	TCGA-BP-5187-01A-01D-1429-08	22063270	67779288	39570252	44	24289											
SMEK1	55671	broad.mit.edu;hgsc.bcm.edu	37	14	91925215	91925215	+	Splice_Site	SNP	T	T	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	91925215	T	A	91925215	5	1	419	1	0	0	0	0	0	0	1	0	14806	1594	55	5	115	5	SMEK1	14	91925215	Splice_Site	SNP	T	TCGA-BP-5187-01A-01D-1429-08	24145927	91925215	15424325	45	24290											
THBS1	7057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	39885311	39885311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	39885311	T	C	39885311	3	2	419	1	0	0	0	0	1	0	0	0	15865	1493	52	3	2944	3	THBS1	15	39885311	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08		39885311	62646081	46	24291											
TMOD2	29767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52065996	52065996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	52065996	C	A	52065996	3	1	419	1	0	0	0	0	1	0	0	0	16246	739	26	4	381	4	TMOD2	15	52065996	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	12180685	52065996	50465396	47	24292	304	2									
TMOD2	29767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52066002	52066002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	52066002	C	T	52066002	3	4	419	1	0	0	0	0	1	0	0	0	16246	739	26	2	387	2	TMOD2	15	52066002	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	6	52066002	50465390	48	24293	304	2									
PPL	5493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4953981	4953981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	4953981	C	G	4953981	3	3	419	1	0	0	0	0	1	0	0	0	12344	507	18	4	5127	4	PPL	16	4953981	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08		4953981	85400772	49	24294											
SAMD14	201191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48191587	48191587	+	Silent	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	48191587	A	G	48191587	2	3	419	1	0	0	0	0	0	0	0	1	13832	59	3	3		3	SAMD14	17	48191587	Silent	SNP	A	TCGA-BP-5187-01A-01D-1429-08		48191587	33003623	50	24295											
SPAG9	9043	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	49057150	49057150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	49057150	A	C	49057150	3	2	419	1	0	0	0	0	1	0	0	0	14998	330	12	5	619	5	SPAG9	17	49057150	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08	865563	49057150	32138060	51	24296											
COX11	1353	broad.mit.edu;hgsc.bcm.edu	37	17	53040153	53040153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	53040153	A	G	53040153	3	3	419	1	0	0	0	0	1	0	0	0	3765	246	9	3	128	3	COX11	17	53040153	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08	3983003	53040153	28155057	52	24297											
GAA	2548	broad.mit.edu;hgsc.bcm.edu	37	17	78090863	78090863	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	78090863	A	T	78090863	3	4	419	1	0	0	0	0	1	0	0	0	6154	69	3	5	2344	5	GAA	17	78090863	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08	25050710	78090863	3104347	53	24298											
CEP76	79959	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	12701062	12701062	+	Silent	SNP	T	T	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	12701062	T	C	12701062	2	2	419	1	0	0	0	0	0	0	0	1	3263	1606	56	3		3	CEP76	18	12701062	Silent	SNP	T	TCGA-BP-5187-01A-01D-1429-08		12701062	65376186	54	24299											
ZNF257	113835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	22271280	22271280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	22271280	A	G	22271280	3	3	419	1	0	0	0	0	1	0	0	0	17812	159	6	3	742	3	ZNF257	19	22271280	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08		22271280	36857703	55	24300											
MARK4	57787	broad.mit.edu;ucsc.edu	37	19	45800968	45800968	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	45800968	C	C	45800968	3	2	419	1	0	0	0	0	1	0	0	0	9322	1551	54	3	1691	3	MARK4	19	45800968	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08	23529688	45800968	13328015	56	24301											
KLK14	43847	broad.mit.edu;hgsc.bcm.edu	37	19	51582708	51582708	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	51582708	A	T	51582708	3	4	419	1	0	0	0	0	1	0	0	0	8409	333	12	5	303	5	KLK14	19	51582708	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08	5781740	51582708	7546275	57	24302											
NLRP2	55655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55497591	55497591	+	Silent	SNP	G	G	T	rs144434448	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	55497591	G	T	55497591	2	4	419	1	0	0	0	0	0	0	0	1	10484	1132	40	4		4	NLRP2	19	55497591	Silent	SNP	G	TCGA-BP-5187-01A-01D-1429-08	3914883	55497591	3631392	58	24303											
TGM6	343641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2381082	2381082	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	2381082	C	G	2381082	3	3	419	1	0	0	0	0	1	0	0	0	15846	477	17	4	1007	4	TGM6	20	2381082	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08		2381082	60644438	59	24304											
GNAS	2778	hgsc.bcm.edu;ucsc.edu	37	20	57484440	57484441	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	57484441	-	T	57484440	7	5	419	1	0	1	1	0	0	0	0	0	6517	903	32	0	3468	0	GNAS	20	57484440	Frame_Shift_Ins	INS	-	TCGA-BP-5187-01A-01D-1429-08	55103358	57484440	5541080	60	24305											
CDH4	1002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	60499490	60499490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	60499490	C	G	60499490	3	3	419	1	0	0	0	0	1	0	0	0	3114	507	18	4	1769	4	CDH4	20	60499490	Missense_Mutation	SNP	C	TCGA-BP-5187-01A-01D-1429-08	3015050	60499490	2526030	61	24306											
SGSM1	129049	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	25251635	25251635	+	Silent	SNP	T	T	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	25251635	T	A	25251635	2	1	419	1	0	0	0	0	0	0	0	1	14235	1770	62	5		5	SGSM1	22	25251635	Silent	SNP	T	TCGA-BP-5187-01A-01D-1429-08		25251635	26052931	62	24307											
SSTR3	6753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	37603580	37603580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	37603580	A	G	37603580	3	3	419	1	0	0	0	0	1	0	0	0	15211	188	7	3	997	3	SSTR3	22	37603580	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08	12351945	37603580	13700986	63	24308											
SMS	6611	broad.mit.edu;hgsc.bcm.edu	37	X	22010764	22010764	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	-	22010764	T	-	22010764	7	5	419	1	0	1	0	1	0	0	0	0	14826	1580	55	0	1033	0	SMS	23	22010764	Frame_Shift_Del	DEL	T	TCGA-BP-5187-01A-01D-1429-08		22010764	133259796	64	24309											
HDAC6	10013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48674573	48674573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	G	48674573	A	G	48674573	3	3	419	1	0	0	0	0	1	0	0	0	7018	217	8	3	1585	3	HDAC6	23	48674573	Missense_Mutation	SNP	A	TCGA-BP-5187-01A-01D-1429-08	26663809	48674573	106595987	65	24310											
SPIN2A	54466	broad.mit.edu;hgsc.bcm.edu	37	X	57162317	57162317	+	Silent	SNP	C	C	T	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	T	57162317	C	T	57162317	2	4	419	1	0	0	0	0	0	0	0	1	15065	465	17	2		2	SPIN2A	23	57162317	Silent	SNP	C	TCGA-BP-5187-01A-01D-1429-08	8487744	57162317	98108243	66	24311											
SLITRK2	84631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	144905975	144905975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	A	144905975	G	A	144905975	3	1	419	1	0	0	0	0	1	0	0	0	14756	1058	37	1	2034	1	SLITRK2	23	144905975	Missense_Mutation	SNP	G	TCGA-BP-5187-01A-01D-1429-08	87743658	144905975	10364585	67	24312											
RENBP	5973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153209149	153209149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5187-01A-01D-1429-08	TCGA-BP-5187-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1a0367d6-1237-454c-a4b0-4fa53782303e	6cc23233-3e06-4b8e-9c48-de62e5c49ebf	C	153209149	T	C	153209149	3	2	419	1	0	0	0	0	1	0	0	0	13238	1406	49	3	1000	3	RENBP	23	153209149	Missense_Mutation	SNP	T	TCGA-BP-5187-01A-01D-1429-08	8303174	153209149	2061411	68	24313											
VHL	7428	hgsc.bcm.edu	37	3	10183863	10183863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5187-01A-01W-1477-10	TCGA-BP-5187-11A-01W-1477-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	b7a53f90-c15e-4b5d-9c9f-2e4818b2e5af	f355d7f7-5d7c-49e5-b272-76709cbfa0d7	A	10183863	G	A	10183863	3	1	420	1	0	0	0	0	1	0	0	0	17174	971	34	2	334	2	VHL	3	10183863	Missense_Mutation	SNP	G	TCGA-BP-5187-01A-01W-1477-10		10183863	187838567	1	24314											
ATP6V0B	533	hgsc.bcm.edu;ucsc.edu	37	1	44442331	44442331	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	-	44442331	G	-	44442331	7	5	421	1	0	1	0	1	0	0	0	0	1171	1014	35	0	366	0	ATP6V0B	1	44442331	Frame_Shift_Del	DEL	G	TCGA-BP-5189-01A-02D-1429-08		44442331	204808290	1	24315											
ROR1	4919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	64643611	64643611	+	Silent	SNP	A	A	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	64643611	A	G	64643611	2	3	421	1	0	0	0	0	0	0	0	1	13539	349	13	3		3	ROR1	1	64643611	Silent	SNP	A	TCGA-BP-5189-01A-02D-1429-08	20201280	64643611	184607010	2	24316											
SORT1	6272	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109888450	109888450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	109888450	A	G	109888450	3	3	421	1	0	0	0	0	1	0	0	0	14948	72	3	3	1661	3	SORT1	1	109888450	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08	45244839	109888450	139362171	3	24317											
OTUD7B	56957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	149920957	149920957	+	Silent	SNP	A	A	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	149920957	A	G	149920957	2	3	421	1	0	0	0	0	0	0	0	1	11326	456	16	3		3	OTUD7B	1	149920957	Silent	SNP	A	TCGA-BP-5189-01A-02D-1429-08	40032507	149920957	99329664	4	24318											
TMOD4	29765	hgsc.bcm.edu;ucsc.edu	37	1	151143053	151143054	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	-	151143054	AA	-	151143053	7	5	421	1	0	1	0	1	0	0	0	0	16248	359	13	0	88	0	TMOD4	1	151143053	Frame_Shift_Del	DEL	AA	TCGA-BP-5189-01A-02D-1429-08	1222096	151143053	98107568	5	24319											
ATP1A2	477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160098797	160098797	+	Missense_Mutation	SNP	C	C	T	rs121918618		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	160098797	C	T	160098797	3	4	421	1	0	0	0	0	1	0	0	0	1129	536	19	1	1282	1	ATP1A2	1	160098797	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08	8955744	160098797	89151824	6	24320											
NAT8	9027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	73868095	73868095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	73868095	A	G	73868095	3	3	421	1	0	0	0	0	1	0	0	0	10186	246	9	3	26	3	NAT8	2	73868095	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08		73868095	169331278	7	24321											
STAT4	6775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	191900934	191900934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	191900934	C	A	191900934	3	1	421	1	0	0	0	0	1	0	0	0	15279	507	18	4	752	4	STAT4	2	191900934	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08	118032839	191900934	51298439	8	24322											
CLK1	1195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	201719363	201719363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	C	201719363	G	C	201719363	3	2	421	1	0	0	0	0	1	0	0	0	3538	1348	47	4	270	4	CLK1	2	201719363	Missense_Mutation	SNP	G	TCGA-BP-5189-01A-02D-1429-08	9818429	201719363	41480010	9	24323											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu	37	3	52595822	52595822	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	C	52595822	A	C	52595822	3	2	421	1	0	0	0	0	1	0	0	0	11498	217	8	5	675	5	PBRM1	3	52595822	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08		52595822	145426608	10	24324	305	2									
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52595829	52595829	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	-	52595829	C	-	52595829	7	5	421	1	0	1	0	1	0	0	0	0	11498	842	30	0	682	0	PBRM1	3	52595829	Frame_Shift_Del	DEL	C	TCGA-BP-5189-01A-02D-1429-08	7	52595829	145426601	11	24325	305	2									
GBA3	57733	broad.mit.edu;hgsc.bcm.edu	37	4	22749618	22749618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	22749618	A	G	22749618	3	3	421	1	0	0	0	0	1	0	0	0	6275	333	12	3	996	3	GBA3	4	22749618	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08		22749618	168404658	12	24326											
EPHA5	2044	hgsc.bcm.edu;ucsc.edu	37	4	66189869	66189869	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	-	66189869	A	-	66189869	7	5	421	1	0	1	0	1	0	0	0	0	5172	217	8	0	40	0	EPHA5	4	66189869	Frame_Shift_Del	DEL	A	TCGA-BP-5189-01A-02D-1429-08	43440251	66189869	124964407	13	24327											
ANKRD34B	340120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	79854670	79854670	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	79854670	A	T	79854670	3	4	421	1	0	0	0	0	1	0	0	0	663	72	3	5	379	5	ANKRD34B	5	79854670	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08		79854670	101060590	14	24328											
PPP2R2B	5521	broad.mit.edu;hgsc.bcm.edu	37	5	145980011	145980011	+	Missense_Mutation	SNP	G	G	A	rs148423117		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	145980011	G	A	145980011	3	1	421	1	0	0	0	0	1	0	0	0	12395	1116	39	1	540	1	PPP2R2B	5	145980011	Missense_Mutation	SNP	G	TCGA-BP-5189-01A-02D-1429-08	66125341	145980011	34935249	15	24329											
UBLCP1	134510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	158696067	158696067	+	Silent	SNP	C	C	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	158696067	C	G	158696067	2	3	421	1	0	0	0	0	0	0	0	1	16903	813	29	4		4	UBLCP1	5	158696067	Silent	SNP	C	TCGA-BP-5189-01A-02D-1429-08	12716056	158696067	22219193	16	24330											
SLC29A1	2030	broad.mit.edu	37	6	44200593	44200593	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	44200593	G	G	44200593	3	3	421	1	0	0	0	0	1	0	0	0	14547	1696	59	5	1151	5	SLC29A1	6	44200593	Missense_Mutation	SNP	T	TCGA-BP-5189-01A-02D-1429-08		44200593	126914474	17	24331											
SASH1	23328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	148853944	148853944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	C	148853944	G	C	148853944	3	2	421	1	0	0	0	0	1	0	0	0	13861	1029	36	4	1630	4	SASH1	6	148853944	Missense_Mutation	SNP	G	TCGA-BP-5189-01A-02D-1429-08	104653351	148853944	22261123	18	24332											
AKAP9	10142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	91736718	91736718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	91736718	C	T	91736718	3	4	421	1	0	0	0	0	1	0	0	0	459	681	24	2	11718	2	AKAP9	7	91736718	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08		91736718	67401945	19	24333											
ZNF212	7988	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	148947875	148947875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	148947875	A	G	148947875	3	3	421	1	0	0	0	0	1	0	0	0	17780	43	2	3	528	3	ZNF212	7	148947875	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08	57211157	148947875	10190788	20	24334											
CTSB	1508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	11703216	11703216	+	Silent	SNP	G	G	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	11703216	G	T	11703216	2	4	421	1	0	0	0	0	0	0	0	1	4032	987	35	4		4	CTSB	8	11703216	Silent	SNP	G	TCGA-BP-5189-01A-02D-1429-08		11703216	134660806	21	24335											
COLEC10	10584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	120118232	120118232	+	Silent	SNP	T	T	C	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	C	120118232	T	C	120118232	2	2	421	1	0	0	0	0	0	0	0	1	3712	1461	51	3		3	COLEC10	8	120118232	Silent	SNP	T	TCGA-BP-5189-01A-02D-1429-08	108415016	120118232	26245790	22	24336											
CYP11B2	1585	broad.mit.edu	37	8	143994277	143994277	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	143994277	A	A	143994277	3	1	421	1	0	0	0	0	1	0	0	0	4148	593	21	4	377	4	CYP11B2	8	143994277	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08	23876045	143994277	2369745	23	24337											
TNC	3371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	117848654	117848654	+	Silent	SNP	G	G	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	117848654	G	A	117848654	2	1	421	1	0	0	0	0	0	0	0	1	16282	1306	46	2		2	TNC	9	117848654	Silent	SNP	G	TCGA-BP-5189-01A-02D-1429-08		117848654	23364777	24	24338											
C10orf71	118461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	50532616	50532616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	50532616	G	A	50532616	3	1	421	1	0	0	0	0	1	0	0	0	1616	1377	48	2	2028	2	C10orf71	10	50532616	Missense_Mutation	SNP	G	TCGA-BP-5189-01A-02D-1429-08		50532616	85002131	25	24339											
ADAMTS14	140766	broad.mit.edu;hgsc.bcm.edu	37	10	72496510	72496510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	72496510	G	T	72496510	3	4	421	1	0	0	0	0	1	0	0	0	259	991	35	4	1607	4	ADAMTS14	10	72496510	Missense_Mutation	SNP	G	TCGA-BP-5189-01A-02D-1429-08	21963894	72496510	63038237	26	24340											
CCDC147	159686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	106209950	106209950	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	106209950	A	T	106209950	3	4	421	1	0	0	0	0	1	0	0	0	2783	246	9	5	2564	5	CCDC147	10	106209950	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08	33713440	106209950	29324797	27	24341											
PLEKHA7	144100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	16838838	16838838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	16838838	C	T	16838838	3	4	421	1	0	0	0	0	1	0	0	0	12068	623	22	2	2042	2	PLEKHA7	11	16838838	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08		16838838	118167678	28	24342											
PLEKHA7	144100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	16847952	16847952	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	16847952	T	G	16847952	3	3	421	1	0	0	0	0	1	0	0	0	12068	1551	54	5	2363	5	PLEKHA7	11	16847952	Missense_Mutation	SNP	T	TCGA-BP-5189-01A-02D-1429-08	9114	16847952	118158564	29	24343											
OR4C3	256144	broad.mit.edu;hgsc.bcm.edu	37	11	48346849	48346849	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	48346849	T	A	48346849	4	1	421	1	0	0	0	0	0	1	0	0	11057	1471	51	5	359	5	OR4C3	11	48346849	Nonsense_Mutation	SNP	T	TCGA-BP-5189-01A-02D-1429-08	31498897	48346849	86659667	30	24344											
ULK1	8408	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	132400471	132400471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	132400471	G	A	132400471	3	1	421	1	0	0	0	0	1	0	0	0	16987	1116	39	1	1719	1	ULK1	12	132400471	Missense_Mutation	SNP	G	TCGA-BP-5189-01A-02D-1429-08		132400471	1451424	31	24345											
RALGAPA1	253959	broad.mit.edu;hgsc.bcm.edu	37	14	36125081	36125081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	36125081	C	T	36125081	3	4	421	1	0	0	0	0	1	0	0	0	13026	922	32	2	2405	2	RALGAPA1	14	36125081	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08		36125081	71224459	32	24346											
KIAA0586	9786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58937442	58937442	+	Splice_Site	SNP	G	G	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	58937442	G	T	58937442	5	4	421	1	0	0	0	0	0	0	1	0	8193	1275	44	4	2388	4	KIAA0586	14	58937442	Splice_Site	SNP	G	TCGA-BP-5189-01A-02D-1429-08	22812361	58937442	48412098	33	24347											
SIPA1L1	26037	hgsc.bcm.edu;ucsc.edu	37	14	72117112	72117112	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	-	72117112	G	-	72117112	7	5	421	1	0	1	0	1	0	0	0	0	14342	943	33	0	1893	0	SIPA1L1	14	72117112	Frame_Shift_Del	DEL	G	TCGA-BP-5189-01A-02D-1429-08	13179670	72117112	35232428	34	24348											
EIF2B2	8892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75475794	75475794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	C	75475794	T	C	75475794	3	2	421	1	0	0	0	0	1	0	0	0	5003	1551	54	3	989	3	EIF2B2	14	75475794	Missense_Mutation	SNP	T	TCGA-BP-5189-01A-02D-1429-08	3358682	75475794	31873746	35	24349											
RYR3	6263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	33822793	33822793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	33822793	G	A	33822793	3	1	421	1	0	0	0	0	1	0	0	0	13783	1217	42	2	294	2	RYR3	15	33822793	Missense_Mutation	SNP	G	TCGA-BP-5189-01A-02D-1429-08		33822793	68708599	36	24350											
PARP16	54956	broad.mit.edu;ucsc.edu	37	15	65551800	65551800	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	C	65551800	C	C	65551800	3	2	421	1	0	0	0	0	1	0	0	0	11467	159	6	5	58	5	PARP16	15	65551800	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08	31729007	65551800	36979592	37	24351											
LOXL1	4016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	74239564	74239564	+	Silent	SNP	G	G	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	74239564	G	A	74239564	2	1	421	1	0	0	0	0	0	0	0	1	8906	1014	35	2		2	LOXL1	15	74239564	Silent	SNP	G	TCGA-BP-5189-01A-02D-1429-08	8687764	74239564	28291828	38	24352											
SCAMP2	10066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75142952	75142952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	C	75142952	A	C	75142952	3	2	421	1	0	0	0	0	1	0	0	0	13884	304	11	5	470	5	SCAMP2	15	75142952	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08	903388	75142952	27388440	39	24353											
FHOD1	29109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67265179	67265179	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	C	67265179	A	C	67265179	3	2	421	1	0	0	0	0	1	0	0	0	5889	420	15	5	939	5	FHOD1	16	67265179	Missense_Mutation	SNP	A	TCGA-BP-5189-01A-02D-1429-08		67265179	23089574	40	24354											
FAM65A	79567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67579292	67579292	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	67579292	C	G	67579292	3	3	421	1	0	0	0	0	1	0	0	0	5606	854	30	4	3111	4	FAM65A	16	67579292	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08	314113	67579292	22775461	41	24355											
MLYCD	23417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	83940609	83940609	+	Silent	SNP	G	G	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	83940609	G	T	83940609	2	4	421	1	0	0	0	0	0	0	0	1	9645	1277	45	4		4	MLYCD	16	83940609	Silent	SNP	G	TCGA-BP-5189-01A-02D-1429-08	16361317	83940609	6414144	42	24356											
MYH4	4622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10351442	10351442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	10351442	G	A	10351442	3	1	421	1	0	0	0	0	1	0	0	0	10044	1333	46	2	1189	2	MYH4	17	10351442	Missense_Mutation	SNP	G	TCGA-BP-5189-01A-02D-1429-08		10351442	70843768	43	24357											
SEC14L1	6397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	75209495	75209495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	75209495	G	A	75209495	3	1	421	1	0	0	0	0	1	0	0	0	13994	1145	40	1	2017	1	SEC14L1	17	75209495	Missense_Mutation	SNP	G	TCGA-BP-5189-01A-02D-1429-08	64858053	75209495	5985715	44	24358											
HSH2D	84941	broad.mit.edu	37	19	16263872	16263872	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	G	16263872	G	G	16263872	3	3	421	1	0	0	0	0	1	0	0	0	7407	594	21	4	245	4	HSH2D	19	16263872	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08		16263872	42865111	45	24359											
ZNF93	81931	broad.mit.edu;hgsc.bcm.edu	37	19	20044531	20044531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	A	20044531	C	A	20044531	3	1	421	1	0	0	0	0	1	0	0	0	18214	623	22	4	781	4	ZNF93	19	20044531	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08	3780659	20044531	39084452	46	24360											
FTL	2512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49469167	49469167	+	Silent	SNP	C	C	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	49469167	C	T	49469167	2	4	421	1	0	0	0	0	0	0	0	1	6091	477	17	2		2	FTL	19	49469167	Silent	SNP	C	TCGA-BP-5189-01A-02D-1429-08	29424636	49469167	9659816	47	24361											
PTPRH	5794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55710122	55710122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	T	55710122	C	T	55710122	3	4	421	1	0	0	0	0	1	0	0	0	12816	681	24	2	1820	2	PTPRH	19	55710122	Missense_Mutation	SNP	C	TCGA-BP-5189-01A-02D-1429-08	6240955	55710122	3418861	48	24362											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53225887	53225887	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5189-01A-02D-1429-08	TCGA-BP-5189-11A-01D-1429-08	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ca98342a-65ec-468a-9cc1-44c7d31a67d6	e83a85aa-b0d1-4c20-9434-2b3d28114c03	-	53225887	G	-	53225887	7	5	421	1	0	1	0	1	0	0	0	0	8142	1348	47	0	1850	0	KDM5C	23	53225887	Frame_Shift_Del	DEL	G	TCGA-BP-5189-01A-02D-1429-08		53225887	102044673	49	24363											
VPS13D	55187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12566928	12566928	+	Silent	SNP	T	T	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	12566928	T	A	12566928	2	1	422	1	0	0	0	0	0	0	0	1	17204	1800	63	5		5	VPS13D	1	12566928	Silent	SNP	T	TCGA-BP-5190-01A-01D-1429-08		12566928	236683693	1	24364											
MRPS21	54460	broad.mit.edu;hgsc.bcm.edu	37	1	150266811	150266811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	150266811	G	A	150266811	3	1	422	1	0	0	0	0	1	0	0	0	9839	1087	38	1	27	1	MRPS21	1	150266811	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	137699883	150266811	98983810	2	24365											
IPO9	55705	broad.mit.edu;ucsc.edu	37	1	201845133	201845133	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	201845133	T	T	201845133	3	4	422	1	0	0	0	0	1	0	0	0	7806	1203	42	4	3171	4	IPO9	1	201845133	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	51578322	201845133	47405488	3	24366											
EMILIN1	11117	hgsc.bcm.edu;ucsc.edu	37	2	27308027	27308032	+	Frame_Shift_Del	DEL	GGAGTG	GGAGTG	-	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	GGAGTG	GGAGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	-	27308032	GGAGTG	-	27308027	7	5	422	1	0	1	0	1	0	0	0	0	5095	1014	35	0	2601	0	EMILIN1	2	27308027	Frame_Shift_Del	DEL	GGAGTG	TCGA-BP-5190-01A-01D-1429-08		27308027	215891346	4	24367											
CTNNA2	1496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	80136882	80136882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	80136882	C	T	80136882	3	4	422	1	0	0	0	0	1	0	0	0	4015	759	27	1		1	CTNNA2	2	80136882	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08	52828855	80136882	163062491	5	24368											
RPL31	6160	broad.mit.edu;hgsc.bcm.edu	37	2	101622534	101622534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	C	101622534	G	C	101622534	3	2	422	1	0	0	0	0	1	0	0	0	13594	1043	36	4	357	4	RPL31	2	101622534	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	21485652	101622534	141576839	6	24369											
NCKAP5	344148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	133541011	133541011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	133541011	C	A	133541011	3	1	422	1	0	0	0	0	1	0	0	0	10230	768	27	4	2384	4	NCKAP5	2	133541011	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08	31918477	133541011	109658362	7	24370											
SCRN3	79634	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	175289230	175289230	+	Silent	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	175289230	G	A	175289230	2	1	422	1	0	0	0	0	0	0	0	1	13953	1306	46	2		2	SCRN3	2	175289230	Silent	SNP	G	TCGA-BP-5190-01A-01D-1429-08	41748219	175289230	67910143	8	24371											
CPS1	1373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	211476961	211476961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	211476961	G	A	211476961	3	1	422	1	0	0	0	0	1	0	0	0	3825	942	33	2	2612	2	CPS1	2	211476961	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	36187731	211476961	31722412	9	24372											
VHL	7428	broad.mit.edu	37	3	10183715	10183716	+	Frame_Shift_Del	DEL	GT	-	-	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	GT	GT	GT	-	GT	GT	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq;PacBio			Illumina GAIIx	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	-	10183716	-	-	10183715	7	5	422	1	0	1	0	1	0	0	0	0	17174	1145	40	0	186	0	VHL	3	10183715	Frame_Shift_Del	DEL	GT	TCGA-BP-5190-01A-01D-1429-08		10183715	187838715	10	24373											
CNTN3	5067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	74474063	74474063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	74474063	C	A	74474063	3	1	422	1	0	0	0	0	1	0	0	0	3644	854	30	4	2775	4	CNTN3	3	74474063	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08	64290348	74474063	123548367	11	24374											
LAMP3	27074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	182871600	182871600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	182871600	G	A	182871600	3	1	422	1	0	0	0	0	1	0	0	0	8626	1145	40	1	641	1	LAMP3	3	182871600	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	108397537	182871600	15150830	12	24375											
BCL6	604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	187446848	187446848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	C	187446848	T	C	187446848	3	2	422	1	0	0	0	0	1	0	0	0	1376	1464	51	3	799	3	BCL6	3	187446848	Missense_Mutation	SNP	T	TCGA-BP-5190-01A-01D-1429-08	4575248	187446848	10575582	13	24376											
SCD5	79966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83719638	83719638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	G	83719638	T	G	83719638	3	3	422	1	0	0	0	0	1	0	0	0	13900	1783	62	5	1165	5	SCD5	4	83719638	Missense_Mutation	SNP	T	TCGA-BP-5190-01A-01D-1429-08		83719638	107434638	14	24377											
PLA2G12A	81579	broad.mit.edu;hgsc.bcm.edu	37	4	110650931	110650931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	G	110650931	A	G	110650931	3	3	422	1	0	0	0	0	1	0	0	0	11997	188	7	3	550	3	PLA2G12A	4	110650931	Missense_Mutation	SNP	A	TCGA-BP-5190-01A-01D-1429-08	26931293	110650931	80503345	15	24378											
TRPC3	7222	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	122853762	122853762	+	Silent	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	122853762	G	A	122853762	2	1	422	1	0	0	0	0	0	0	0	1	16591	1136	40	1		1	TRPC3	4	122853762	Silent	SNP	G	TCGA-BP-5190-01A-01D-1429-08	12202831	122853762	68300514	16	24379											
PCDHA2	56146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140174870	140174870	+	Silent	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	140174870	G	A	140174870	2	1	422	1	0	0	0	0	0	0	0	1	11531	991	35	2		2	PCDHA2	5	140174870	Silent	SNP	G	TCGA-BP-5190-01A-01D-1429-08		140174870	40740390	17	24380											
LSM11	134353	broad.mit.edu	37	5	157170976	157170976	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	157170976	A	A	157170976	3	1	422	1	0	0	0	0	1	0	0	0	9059	1232	43	2	220	2	LSM11	5	157170976	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	16996106	157170976	23744284	18	24381											
CCHCR1	54535	broad.mit.edu;hgsc.bcm.edu	37	6	31122472	31122472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	31122472	C	T	31122472	3	4	422	1	0	0	0	0	1	0	0	0	2879	652	23	1	2073	1	CCHCR1	6	31122472	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08		31122472	139992595	19	24382											
DST	667	broad.mit.edu	37	6	56373344	56373344	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	C	56373344	C	C	56373344	3	2	422	1	0	0	0	0	1	0	0	0	4785	1386	48	4	4278	4	DST	6	56373344	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	25250872	56373344	114741723	20	24383											
MLLT4	4301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	168297599	168297599	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	168297599	C	T	168297599	4	4	422	1	0	0	0	0	0	1	0	0	9636	827	29	2	1302	2	MLLT4	6	168297599	Nonsense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08	111924255	168297599	2817468	21	24384											
VPS41	27072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	38803128	38803128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	C	38803128	G	C	38803128	3	2	422	1	0	0	0	0	1	0	0	0	17222	1348	47	4	1267	4	VPS41	7	38803128	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08		38803128	120335535	22	24385											
AGPAT5	55326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	6614716	6614716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	6614716	C	T	6614716	3	4	422	1	0	0	0	0	1	0	0	0	390	594	21	2	932	2	AGPAT5	8	6614716	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08		6614716	139749306	23	24386											
EEF1D	1936	hgsc.bcm.edu;ucsc.edu	37	8	144672056	144672056	+	Missense_Mutation	SNP	G	G	A	rs138749465		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	144672056	G	A	144672056	3	1	422	1	0	0	0	0	1	0	0	0	4928	1232	43	2	1779	2	EEF1D	8	144672056	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	138057340	144672056	1691966	24	24387											
DIP2C	22982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	430563	430563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	G	430563	A	G	430563	3	3	422	1	0	0	0	0	1	0	0	0	4531	217	8	3	3083	3	DIP2C	10	430563	Missense_Mutation	SNP	A	TCGA-BP-5190-01A-01D-1429-08		430563	135104184	25	24388											
FUT11	170384	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75533416	75533416	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	C	75533416	G	C	75533416	3	2	422	1	0	0	0	0	1	0	0	0	6110	1290	45	4	1183	4	FUT11	10	75533416	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	75102853	75533416	60001331	26	24389											
MUC6	4588	broad.mit.edu	37	11	1017647	1017647	+	Silent	SNP	G	T	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	1017647	T	T	1017647	2	4	422	1	0	0	0	0	0	0	0	1	9987	1335	47	4		4	MUC6	11	1017647	Silent	SNP	G	TCGA-BP-5190-01A-01D-1429-08		1017647	133988869	27	24390											
RAG2	5897	hgsc.bcm.edu	37	11	36614395	36614396	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	G	36614396	-	G	36614395	7	5	422	1	0	1	1	0	0	0	0	0	13018	768	27	0	263	0	RAG2	11	36614395	Frame_Shift_Ins	INS	-	TCGA-BP-5190-01A-01D-1429-08	35596748	36614395	98392121	28	24391											
CD6	923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60785461	60785461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	60785461	G	A	60785461	3	1	422	1	0	0	0	0	1	0	0	0	3030	1203	42	2	1855	2	CD6	11	60785461	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	24171066	60785461	74221055	29	24392											
ARID2	196528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	46245701	46245701	+	Silent	SNP	C	C	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	46245701	C	A	46245701	2	1	422	1	0	0	0	0	0	0	0	1	915	813	29	4		4	ARID2	12	46245701	Silent	SNP	C	TCGA-BP-5190-01A-01D-1429-08		46245701	87606194	30	24393											
KSR2	283455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	118020150	118020150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	C	118020150	G	C	118020150	3	2	422	1	0	0	0	0	1	0	0	0	8589	1203	42	4	1726	4	KSR2	12	118020150	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08	71774449	118020150	15831745	31	24394											
POSTN	10631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	38154095	38154095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	38154095	C	A	38154095	3	1	422	1	0	0	0	0	1	0	0	0	12266	825	29	4	995	4	POSTN	13	38154095	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08		38154095	77015783	32	24395											
GAS6	2621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	114549554	114549554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	G	114549554	T	G	114549554	3	3	422	1	0	0	0	0	1	0	0	0	6256	1812	63	5	1795	5	GAS6	13	114549554	Missense_Mutation	SNP	T	TCGA-BP-5190-01A-01D-1429-08	76395459	114549554	620324	33	24396											
OR4M2	390538	broad.mit.edu;hgsc.bcm.edu	37	15	22369272	22369272	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	22369272	G	T	22369272	4	4	422	1	0	0	0	0	0	1	0	0	11083	1291	45	4	699	4	OR4M2	15	22369272	Nonsense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08		22369272	80162120	34	24397											
MINK1	50488	broad.mit.edu;hgsc.bcm.edu	37	17	4794820	4794820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	4794820	G	A	4794820	3	1	422	1	0	0	0	0	1	0	0	0	9594	1174	41	2	1611	2	MINK1	17	4794820	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08		4794820	76400390	35	24398											
ELAC2	60528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	12920219	12920219	+	Silent	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	12920219	G	A	12920219	2	1	422	1	0	0	0	0	0	0	0	1	5049	1165	41	2		2	ELAC2	17	12920219	Silent	SNP	G	TCGA-BP-5190-01A-01D-1429-08	8125399	12920219	68274991	36	24399											
KRT27	342574	broad.mit.edu;ucsc.edu	37	17	38933946	38933946	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	38933946	T	T	38933946	3	4	422	1	0	0	0	0	1	0	0	0	8471	388	14	5	380	5	KRT27	17	38933946	Missense_Mutation	SNP	A	TCGA-BP-5190-01A-01D-1429-08	26013727	38933946	42261264	37	24400											
ARL16	339231	hgsc.bcm.edu	37	17	79650800	79650800	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	-	79650800	C	-	79650800	7	5	422	1	0	1	0	1	0	0	0	0	932	507	18	0	557	0	ARL16	17	79650800	Frame_Shift_Del	DEL	C	TCGA-BP-5190-01A-01D-1429-08	40716854	79650800	1544410	38	24401											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9009312	9009312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	9009312	G	A	9009312	3	1	422	1	0	0	0	0	1	0	0	0	9980	1174	41	2	4542	2	MUC16	19	9009312	Missense_Mutation	SNP	G	TCGA-BP-5190-01A-01D-1429-08		9009312	50119671	39	24402	306	2									
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9009313	9009313	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	9009313	A	T	9009313	3	4	422	1	0	0	0	0	1	0	0	0	9980	304	11	5	4543	5	MUC16	19	9009313	Missense_Mutation	SNP	A	TCGA-BP-5190-01A-01D-1429-08	1	9009313	50119670	40	24403	306	2									
PEPD	5184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	33902626	33902626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	33902626	C	A	33902626	3	1	422	1	0	0	0	0	1	0	0	0	11735	855	30	4	731	4	PEPD	19	33902626	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08	24893313	33902626	25226357	41	24404											
MLL4	9757	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36219945	36219945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	36219945	C	T	36219945	3	4	422	1	0	0	0	0	1	0	0	0	9630	565	20	2	4829	2	MLL4	19	36219945	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08	2317319	36219945	22909038	42	24405											
TMEM149	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36231433	36231433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	T	36231433	C	T	36231433	3	4	422	1	0	0	0	0	1	0	0	0	16074	826	29	2	889	2	TMEM149	19	36231433	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08	11488	36231433	22897550	43	24406											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53228204	53228204	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	G	53228204	T	G	53228204	3	3	422	1	0	0	0	0	1	0	0	0	8142	1696	59	5	2630	5	KDM5C	23	53228204	Missense_Mutation	SNP	T	TCGA-BP-5190-01A-01D-1429-08		53228204	102042356	44	24407											
MAGEE2	139599	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	75004670	75004670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	75004670	C	A	75004670	3	1	422	1	0	0	0	0	1	0	0	0	9193	884	31	4	1358	4	MAGEE2	23	75004670	Missense_Mutation	SNP	C	TCGA-BP-5190-01A-01D-1429-08	21776466	75004670	80265890	45	24408											
HCFC1	3054	broad.mit.edu	37	X	153236256	153236256	+	Silent	SNP	C	A	A	novel		TCGA-BP-5190-01A-01D-1429-08	TCGA-BP-5190-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5491645b-552c-47a9-b081-e8e508d1df3d	d2f881a8-f629-40a3-a179-3f8749a51d48	A	153236256	A	A	153236256	2	1	422	1	0	0	0	0	0	0	0	1	6998	639	23	4		4	HCFC1	23	153236256	Silent	SNP	C	TCGA-BP-5190-01A-01D-1429-08	78231586	153236256	2034304	46	24409											
APITD1	378708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10502399	10502399	+	Silent	SNP	A	A	G	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	G	10502399	A	G	10502399	2	3	423	1	0	0	0	0	0	0	0	1	775	175	7	3		3	APITD1	1	10502399	Silent	SNP	A	TCGA-BP-5191-01A-01D-1429-08		10502399	238748222	1	24410											
UBIAD1	29914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11345987	11345987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	11345987	C	A	11345987	3	1	423	1	0	0	0	0	1	0	0	0	16897	825	29	4	822	4	UBIAD1	1	11345987	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	843588	11345987	237904634	2	24411											
ZBTB40	9923	hgsc.bcm.edu;ucsc.edu	37	1	22850736	22850737	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	22850737	-	T	22850736	7	5	423	1	0	1	1	0	0	0	0	0	17554	576	20	0	3386	0	ZBTB40	1	22850736	Frame_Shift_Ins	INS	-	TCGA-BP-5191-01A-01D-1429-08	11504749	22850736	226399885	3	24412											
YY1AP1	55249	broad.mit.edu;hgsc.bcm.edu	37	1	155630682	155630682	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	155630682	T	A	155630682	4	1	423	1	0	0	0	0	0	1	0	0	17520	1783	62	5	1237	5	YY1AP1	1	155630682	Nonsense_Mutation	SNP	T	TCGA-BP-5191-01A-01D-1429-08	132779946	155630682	93619939	4	24413											
EPRS	2058	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	220213565	220213565	+	Silent	SNP	G	G	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	220213565	G	A	220213565	2	1	423	1	0	0	0	0	0	0	0	1	5193	1103	39	1		1	EPRS	1	220213565	Silent	SNP	G	TCGA-BP-5191-01A-01D-1429-08	64582883	220213565	29037056	5	24414											
LYST	1130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	235918806	235918806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	235918806	A	C	235918806	3	2	423	1	0	0	0	0	1	0	0	0	9135	72	3	5	4320	5	LYST	1	235918806	Missense_Mutation	SNP	A	TCGA-BP-5191-01A-01D-1429-08	15705241	235918806	13331815	6	24415											
EPAS1	2034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	46587819	46587819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	46587819	G	T	46587819	3	4	423	1	0	0	0	0	1	0	0	0	5152	1116	39	4	515	4	EPAS1	2	46587819	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08		46587819	196611554	7	24416											
UPP2	151531	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	158971713	158971713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	158971713	T	C	158971713	3	2	423	1	0	0	0	0	1	0	0	0	17025	1435	50	3	470	3	UPP2	2	158971713	Missense_Mutation	SNP	T	TCGA-BP-5191-01A-01D-1429-08	112383894	158971713	84227660	8	24417											
SCN2A	6326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	166170262	166170262	+	Silent	SNP	T	T	G	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	G	166170262	T	G	166170262	2	3	423	1	0	0	0	0	0	0	0	1	13929	1828	64	5		5	SCN2A	2	166170262	Silent	SNP	T	TCGA-BP-5191-01A-01D-1429-08	7198549	166170262	77029111	9	24418											
CCDC150	284992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	197511118	197511118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	197511118	C	A	197511118	3	1	423	1	0	0	0	0	1	0	0	0	2787	535	19	4	72	4	CCDC150	2	197511118	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	31340856	197511118	45688255	10	24419											
GLB1	2720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33114174	33114174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	33114174	T	C	33114174	3	2	423	1	0	0	0	0	1	0	0	0	6434	1406	49	3	1986	3	GLB1	3	33114174	Missense_Mutation	SNP	T	TCGA-BP-5191-01A-01D-1429-08		33114174	164908256	11	24420											
PRKCD	5580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	53220309	53220309	+	Missense_Mutation	SNP	G	G	A	rs150331740		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	53220309	G	A	53220309	3	1	423	1	0	0	0	0	1	0	0	0	12519	1087	38	1	1255	1	PRKCD	3	53220309	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	20106135	53220309	144802121	12	24421											
PLXND1	23129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	129324730	129324730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	129324730	C	A	129324730	3	1	423	1	0	0	0	0	1	0	0	0	12134	796	28	4	5168	4	PLXND1	3	129324730	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	76104421	129324730	68697700	13	24422											
DGKQ	1609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	954842	954842	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	954842	G	C	954842	3	2	423	1	0	0	0	0	1	0	0	0	4475	1232	43	4	114	4	DGKQ	4	954842	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08		954842	190199434	14	24423											
CTBP1	1487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	1206792	1206792	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	1206792	A	C	1206792	3	2	423	1	0	0	0	0	1	0	0	0	3999	188	7	5	282	5	CTBP1	4	1206792	Missense_Mutation	SNP	A	TCGA-BP-5191-01A-01D-1429-08	251950	1206792	189947484	15	24424											
DNAH5	1767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	13753411	13753411	+	Silent	SNP	A	A	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	13753411	A	T	13753411	2	4	423	1	0	0	0	0	0	0	0	1	4606	59	3	5		5	DNAH5	5	13753411	Silent	SNP	A	TCGA-BP-5191-01A-01D-1429-08		13753411	167161849	16	24425											
EGFLAM	133584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	38427321	38427321	+	Missense_Mutation	SNP	G	G	A	rs144065923	bycluster;byfrequency;by1000genomes	TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	38427321	G	A	38427321	3	1	423	1	0	0	0	0	1	0	0	0	4968	1087	38	1	2089	1	EGFLAM	5	38427321	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	24673910	38427321	142487939	17	24426											
TRPC7	57113	broad.mit.edu	37	5	135561876	135561879	+	Frame_Shift_Del	DEL	CTTC	-	-	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	CTTC	CTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	-	135561879	-	-	135561876	7	5	423	1	0	1	0	1	0	0	0	0	16596	913	32	0	496	0	TRPC7	5	135561876	Frame_Shift_Del	DEL	CTTC	TCGA-BP-5191-01A-01D-1429-08	97134555	135561876	45353384	18	24427											
SLC35B2	347734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44222678	44222678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	G	44222678	A	G	44222678	3	3	423	1	0	0	0	0	1	0	0	0	14589	333	12	3	238	3	SLC35B2	6	44222678	Missense_Mutation	SNP	A	TCGA-BP-5191-01A-01D-1429-08		44222678	126892389	19	24428											
C6orf70	55780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	170162545	170162545	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	170162545	T	A	170162545	4	1	423	1	0	0	0	0	0	1	0	0	2372	1821	63	5	912	5	C6orf70	6	170162545	Nonsense_Mutation	SNP	T	TCGA-BP-5191-01A-01D-1429-08	125939867	170162545	952522	20	24429											
CCDC146	57639	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	76912017	76912017	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	76912017	A	T	76912017	3	4	423	1	0	0	0	0	1	0	0	0	2782	304	11	5	2117	5	CCDC146	7	76912017	Missense_Mutation	SNP	A	TCGA-BP-5191-01A-01D-1429-08		76912017	82226646	21	24430											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82595361	82595361	+	Missense_Mutation	SNP	A	A	G	rs61995907	by1000genomes	TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	G	82595361	A	G	82595361	3	3	423	1	0	0	0	0	1	0	0	0	11590	420	15	3	11790	3	PCLO	7	82595361	Missense_Mutation	SNP	A	TCGA-BP-5191-01A-01D-1429-08	5683344	82595361	76543302	22	24431											
AKAP9	10142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	91712684	91712684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	91712684	G	T	91712684	3	4	423	1	0	0	0	0	1	0	0	0	459	933	33	4	8491	4	AKAP9	7	91712684	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	9117323	91712684	67425979	23	24432											
DECR1	1666	broad.mit.edu;hgsc.bcm.edu	37	8	91013753	91013753	+	Silent	SNP	G	G	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	91013753	G	A	91013753	2	1	423	1	0	0	0	0	0	0	0	1	4384	1335	47	2		2	DECR1	8	91013753	Silent	SNP	G	TCGA-BP-5191-01A-01D-1429-08		91013753	55350269	24	24433											
TRPM6	140803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	77442693	77442693	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	77442693	C	T	77442693	5	4	423	1	0	0	0	0	0	0	1	0	16602	550	19	1	5358	1	TRPM6	9	77442693	Splice_Site	SNP	C	TCGA-BP-5191-01A-01D-1429-08		77442693	63770738	25	24434											
FAM22G	441457	broad.mit.edu;hgsc.bcm.edu	37	9	99700276	99700276	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	99700276	T	A	99700276	3	1	423	1	0	0	0	0	1	0	0	0	5550	1609	56	5	1455	5	FAM22G	9	99700276	Missense_Mutation	SNP	T	TCGA-BP-5191-01A-01D-1429-08	22257583	99700276	41513155	26	24435											
PHYHIPL	84457	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	60994152	60994152	+	Silent	SNP	A	A	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	60994152	A	C	60994152	2	2	423	1	0	0	0	0	0	0	0	1	11874	204	8	5		5	PHYHIPL	10	60994152	Silent	SNP	A	TCGA-BP-5191-01A-01D-1429-08		60994152	74540595	27	24436											
KIF11	3832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	94397051	94397051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	94397051	G	C	94397051	3	2	423	1	0	0	0	0	1	0	0	0	8279	1281	45	4	2044	4	KIF11	10	94397051	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	33402899	94397051	41137696	28	24437											
ANKRD2	26287	broad.mit.edu;hgsc.bcm.edu	37	10	99343409	99343409	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	99343409	G	C	99343409	3	2	423	1	0	0	0	0	1	0	0	0	647	1232	43	4	1044	4	ANKRD2	10	99343409	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	4946358	99343409	36191338	29	24438											
TACC2	10579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	123845033	123845033	+	Silent	SNP	G	G	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	123845033	G	A	123845033	2	1	423	1	0	0	0	0	0	0	0	1	15514	962	34	2		2	TACC2	10	123845033	Silent	SNP	G	TCGA-BP-5191-01A-01D-1429-08	24501624	123845033	11689714	30	24439											
NLRP6	171389	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	281628	281628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	281628	G	A	281628	3	1	423	1	0	0	0	0	1	0	0	0	10488	1087	38	1	1908	1	NLRP6	11	281628	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08		281628	134724888	31	24440											
INCENP	3619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61897770	61897770	+	Silent	SNP	C	C	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	61897770	C	A	61897770	2	1	423	1	0	0	0	0	0	0	0	1	7740	813	29	4		4	INCENP	11	61897770	Silent	SNP	C	TCGA-BP-5191-01A-01D-1429-08	61616142	61897770	73108746	32	24441											
MTMR2	8898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	95581057	95581057	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	G	95581057	C	G	95581057	3	3	423	1	0	0	0	0	1	0	0	0	9951	623	22	4	955	4	MTMR2	11	95581057	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	33683287	95581057	39425459	33	24442											
IL23A	51561	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56733621	56733621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	56733621	G	T	56733621	3	4	423	1	0	0	0	0	1	0	0	0	7682	1014	35	4	418	4	IL23A	12	56733621	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08		56733621	77118274	34	24443											
LRP1	4035	hgsc.bcm.edu;ucsc.edu	37	12	57550598	57550598	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	-	57550598	C	-	57550598	7	5	423	1	0	1	0	1	0	0	0	0	8958	739	26	0	1494	0	LRP1	12	57550598	Frame_Shift_Del	DEL	C	TCGA-BP-5191-01A-01D-1429-08	816977	57550598	76301297	35	24444											
C12orf34	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	110205829	110205829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	110205829	C	T	110205829	3	4	423	1	0	0	0	0	1	0	0	0	1683	739	26	2	101	2	C12orf34	12	110205829	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	52655231	110205829	23646066	36	24445											
FAM179B	23116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	45468576	45468576	+	Silent	SNP	G	G	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	45468576	G	A	45468576	2	1	423	1	0	0	0	0	0	0	0	1	5510	1161	41	2		2	FAM179B	14	45468576	Silent	SNP	G	TCGA-BP-5191-01A-01D-1429-08		45468576	61880964	37	24446											
PRPF39	55015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	45571777	45571777	+	Silent	SNP	T	T	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	45571777	T	C	45571777	2	2	423	1	0	0	0	0	0	0	0	1	12579	1567	55	3		3	PRPF39	14	45571777	Silent	SNP	T	TCGA-BP-5191-01A-01D-1429-08	103201	45571777	61777763	38	24447											
SPTB	6710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	65253682	65253682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	G	65253682	C	G	65253682	3	3	423	1	0	0	0	0	1	0	0	0	15130	864	30	4	4138	4	SPTB	14	65253682	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	19681905	65253682	42095858	39	24448											
SPTB	6710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	65253739	65253739	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	G	65253739	C	G	65253739	3	3	423	1	0	0	0	0	1	0	0	0	15130	913	32	4	4195	4	SPTB	14	65253739	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	57	65253739	42095801	40	24449											
RBM25	58517	broad.mit.edu	37	14	73570019	73570019	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	73570019	T	T	73570019	3	4	423	1	0	0	0	0	1	0	0	0	13138	1223	43	4	1021	4	RBM25	14	73570019	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	8316280	73570019	33779521	41	24450											
TTC8	123016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	89307274	89307274	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	89307274	T	C	89307274	5	2	423	1	0	0	0	0	0	0	1	0	16726	1652	57	3	345	3	TTC8	14	89307274	Splice_Site	SNP	T	TCGA-BP-5191-01A-01D-1429-08	15737255	89307274	18042266	42	24451											
TTC7B	145567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	91110479	91110479	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	91110479	A	T	91110479	3	4	423	1	0	0	0	0	1	0	0	0	16725	72	3	5	891	5	TTC7B	14	91110479	Missense_Mutation	SNP	A	TCGA-BP-5191-01A-01D-1429-08	1803205	91110479	16239061	43	24452											
GNB5	10681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52476835	52476835	+	Silent	SNP	T	T	G	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	G	52476835	T	G	52476835	2	3	423	1	0	0	0	0	0	0	0	1	6528	1451	51	5		5	GNB5	15	52476835	Silent	SNP	T	TCGA-BP-5191-01A-01D-1429-08		52476835	50054557	44	24453											
GGA2	23062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	23494281	23494281	+	Silent	SNP	C	C	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	23494281	C	A	23494281	2	1	423	1	0	0	0	0	0	0	0	1	6360	494	18	4		4	GGA2	16	23494281	Silent	SNP	C	TCGA-BP-5191-01A-01D-1429-08		23494281	66860472	45	24454											
IL4R	3566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	27375116	27375116	+	Missense_Mutation	SNP	G	G	T	rs147700319	bycluster;by1000genomes;alternate_allele	TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	27375116	G	T	27375116	3	4	423	1	0	0	0	0	1	0	0	0	7705	1377	48	4	2495	4	IL4R	16	27375116	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	3880835	27375116	62979637	46	24455											
XPO6	23214	broad.mit.edu;ucsc.edu	37	16	28181115	28181115	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	28181115	C	C	28181115	3	2	423	1	0	0	0	0	1	0	0	0	17460	1609	56	3	2936	3	XPO6	16	28181115	Missense_Mutation	SNP	T	TCGA-BP-5191-01A-01D-1429-08	805999	28181115	62173638	47	24456											
CLEC18B	497190	broad.mit.edu	37	16	74455087	74455087	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	74455087	T	T	74455087	3	4	423	1	0	0	0	0	1	0	0	0	3505	507	18	2	1337	2	CLEC18B	16	74455087	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	46273972	74455087	15899666	48	24457											
UNC13D	201294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73835999	73835999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	73835999	A	C	73835999	3	2	423	1	0	0	0	0	1	0	0	0	16999	275	10	5	2380	5	UNC13D	17	73835999	Missense_Mutation	SNP	A	TCGA-BP-5191-01A-01D-1429-08		73835999	7359211	49	24458											
MKNK2	2872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2041090	2041090	+	Silent	SNP	G	G	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	2041090	G	T	2041090	2	4	423	1	0	0	0	0	0	0	0	1	9612	1335	47	4		4	MKNK2	19	2041090	Silent	SNP	G	TCGA-BP-5191-01A-01D-1429-08		2041090	57087893	50	24459											
LMNB2	84823	hgsc.bcm.edu	37	19	2444467	2444467	+	Silent	SNP	T	T	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	2444467	T	A	2444467	2	1	423	1	0	0	0	0	0	0	0	1	8857	1538	54	5		5	LMNB2	19	2444467	Silent	SNP	T	TCGA-BP-5191-01A-01D-1429-08	403377	2444467	56684516	51	24460											
CHAF1A	10036	broad.mit.edu;hgsc.bcm.edu	37	19	4430546	4430546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	4430546	G	T	4430546	3	4	423	1	0	0	0	0	1	0	0	0	3313	1188	41	4	1897	4	CHAF1A	19	4430546	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	1986079	4430546	54698437	52	24461											
TICAM1	148022	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4817858	4817858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	4817858	G	T	4817858	3	4	423	1	0	0	0	0	1	0	0	0	15904	1000	35	4	1610	4	TICAM1	19	4817858	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	387312	4817858	54311125	53	24462											
NCAN	1463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19329806	19329806	+	Silent	SNP	G	G	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	19329806	G	A	19329806	2	1	423	1	0	0	0	0	0	0	0	1	10211	1103	39	1		1	NCAN	19	19329806	Silent	SNP	G	TCGA-BP-5191-01A-01D-1429-08	14511948	19329806	39799177	54	24463											
PSENEN	55851	broad.mit.edu;ucsc.edu	37	19	36237651	36237651	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	36237651	C	C	36237651	3	2	423	1	0	0	0	0	1	0	0	0	12662	1696	59	3	219	3	PSENEN	19	36237651	Missense_Mutation	SNP	T	TCGA-BP-5191-01A-01D-1429-08	16907845	36237651	22891332	55	24464											
ZNF223	7766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44571333	44571333	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	44571333	G	C	44571333	3	2	423	1	0	0	0	0	1	0	0	0	17789	1029	36	4	1366	4	ZNF223	19	44571333	Missense_Mutation	SNP	G	TCGA-BP-5191-01A-01D-1429-08	8333682	44571333	14557650	56	24465											
KLK8	11202	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51503868	51503868	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	51503868	C	T	51503868	4	4	423	1	0	0	0	0	0	1	0	0	8417	740	26	2	756	2	KLK8	19	51503868	Nonsense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	6932535	51503868	7625115	57	24466											
CSRP2BP	57325	broad.mit.edu;hgsc.bcm.edu	37	20	18123411	18123411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	18123411	C	T	18123411	3	4	423	1	0	0	0	0	1	0	0	0	3970	536	19	1	109	1	CSRP2BP	20	18123411	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08		18123411	44902109	58	24467											
SALL4	57167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	50408862	50408862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	50408862	C	T	50408862	3	4	423	1	0	0	0	0	1	0	0	0	13826	893	31	1	3013	1	SALL4	20	50408862	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08	32285451	50408862	12616658	59	24468											
TSHZ2	128553	hgsc.bcm.edu;ucsc.edu	37	20	51870779	51870779	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	-	51870779	G	-	51870779	7	5	423	1	0	1	0	1	0	0	0	0	16636	1000	35	0	788	0	TSHZ2	20	51870779	Frame_Shift_Del	DEL	G	TCGA-BP-5191-01A-01D-1429-08	1461917	51870779	11154741	60	24469											
LIPI	149998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	15481370	15481370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	C	15481370	T	C	15481370	3	2	423	1	0	0	0	0	1	0	0	0	8832	1763	61	3	59	3	LIPI	21	15481370	Missense_Mutation	SNP	T	TCGA-BP-5191-01A-01D-1429-08		15481370	32648525	61	24470											
KRTAP10-9	386676	hgsc.bcm.edu	37	21	46047394	46047394	+	Silent	SNP	C	C	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	46047394	C	A	46047394	2	1	423	1	0	0	0	0	0	0	0	1	8523	639	23	4		4	KRTAP10-9	21	46047394	Silent	SNP	C	TCGA-BP-5191-01A-01D-1429-08	30566024	46047394	2082501	62	24471											
TRIOBP	11078	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	38119680	38119680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	A	38119680	C	A	38119680	3	1	423	1	0	0	0	0	1	0	0	0	16565	855	30	4	1135	4	TRIOBP	22	38119680	Missense_Mutation	SNP	C	TCGA-BP-5191-01A-01D-1429-08		38119680	13184886	63	24472											
XRCC6	2547	broad.mit.edu;hgsc.bcm.edu	37	22	42054277	42054277	+	Silent	SNP	C	C	T	rs139850731		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	T	42054277	C	T	42054277	2	4	423	1	0	0	0	0	0	0	0	1	17469	639	23	1		1	XRCC6	22	42054277	Silent	SNP	C	TCGA-BP-5191-01A-01D-1429-08	3934597	42054277	9250289	64	24473											
ZFX	7543	hgsc.bcm.edu;ucsc.edu	37	X	24197441	24197458	+	In_Frame_Del	DEL	TTATTGAGGACGTTGTTA	TTATTGAGGACGTTGTTA	-	novel		TCGA-BP-5191-01A-01D-1429-08	TCGA-BP-5191-11A-01D-1429-08	TTATTGAGGACGTTGTTA	TTATTGAGGACGTTGTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64dd8a08-483e-4dce-90b0-64a751fdbebd	326c2936-1793-4fca-bf83-30d569ebcc07	-	24197458	TTATTGAGGACGTTGTTA	-	24197441	7	5	423	1	0	1	0	1	0	0	0	0	17673	1725	60	0	206	0	ZFX	23	24197441	In_Frame_Del	DEL	TTATTGAGGACGTTGTTA	TCGA-BP-5191-01A-01D-1429-08		24197441	131073119	65	24474											
KIF17	57576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	20998503	20998503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	20998503	A	G	20998503	3	3	424	1	0	0	0	0	1	0	0	0	8286	275	10	3	455	3	KIF17	1	20998503	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08		20998503	228252118	1	24475	307	2									
KIF17	57576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	20998504	20998504	+	Silent	SNP	C	C	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	20998504	C	T	20998504	2	4	424	1	0	0	0	0	0	0	0	1	8286	564	20	2		2	KIF17	1	20998504	Silent	SNP	C	TCGA-BP-5192-01A-01D-1429-08	1	20998504	228252117	2	24476	307	2									
RUNX3	864	broad.mit.edu;hgsc.bcm.edu	37	1	25256188	25256188	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	25256188	C	G	25256188	3	3	424	1	0	0	0	0	1	0	0	0	13762	536	19	4	1095	4	RUNX3	1	25256188	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	4257684	25256188	223994433	3	24477											
KCND3	3752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	112319724	112319724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	112319724	C	T	112319724	3	4	424	1	0	0	0	0	1	0	0	0	8027	797	28	2	285	2	KCND3	1	112319724	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	87063536	112319724	136930897	4	24478											
PLEKHA6	22874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	204230552	204230552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	C	204230552	A	C	204230552	3	2	424	1	0	0	0	0	1	0	0	0	12067	420	15	5	2804	5	PLEKHA6	1	204230552	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08	91910828	204230552	45020069	5	24479											
TMEM81	388730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205053016	205053016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	205053016	C	A	205053016	3	1	424	1	0	0	0	0	1	0	0	0	16217	478	17	4	338	4	TMEM81	1	205053016	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	822464	205053016	44197605	6	24480											
R3HDM1	23518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	136402959	136402959	+	Silent	SNP	C	C	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	136402959	C	T	136402959	2	4	424	1	0	0	0	0	0	0	0	1	12900	825	29	2		2	R3HDM1	2	136402959	Silent	SNP	C	TCGA-BP-5192-01A-01D-1429-08		136402959	106796414	7	24481											
DUSP19	142679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	183960371	183960371	+	Silent	SNP	G	G	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	183960371	G	A	183960371	2	1	424	1	0	0	0	0	0	0	0	1	4820	991	35	2		2	DUSP19	2	183960371	Silent	SNP	G	TCGA-BP-5192-01A-01D-1429-08	47557412	183960371	59239002	8	24482											
SPHKAP	80309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228883287	228883287	+	Silent	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	228883287	A	G	228883287	2	3	424	1	0	0	0	0	0	0	0	1	15060	59	3	3		3	SPHKAP	2	228883287	Silent	SNP	A	TCGA-BP-5192-01A-01D-1429-08	44922916	228883287	14316086	9	24483											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191508	10191511	+	Frame_Shift_Del	DEL	GAGC	GAGC	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	GAGC	GAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	10191511	GAGC	-	10191508	7	5	424	1	0	1	0	1	0	0	0	0	17174	1161	41	0	511	0	VHL	3	10191508	Frame_Shift_Del	DEL	GAGC	TCGA-BP-5192-01A-01D-1429-08		10191508	187830922	10	24484											
PLCL2	23228	hgsc.bcm.edu	37	3	17052987	17052988	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	17052988	-	G	17052987	7	5	424	1	0	1	1	0	0	0	0	0	12047	1580	55	0	2149	0	PLCL2	3	17052987	Frame_Shift_Ins	INS	-	TCGA-BP-5192-01A-01D-1429-08	6861479	17052987	180969443	11	24485											
PRSS50	29122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	46754550	46754550	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	46754550	C	T	46754550	4	4	424	1	0	0	0	0	0	1	0	0	12641	740	26	2	403	2	PRSS50	3	46754550	Nonsense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	29701563	46754550	151267880	12	24486											
DNAJB11	51726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186299170	186299170	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	C	186299170	A	C	186299170	3	2	424	1	0	0	0	0	1	0	0	0	4618	43	2	5	485	5	DNAJB11	3	186299170	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08	139544620	186299170	11723260	13	24487											
RFC1	5981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	39308288	39308288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	39308288	C	A	39308288	3	1	424	1	0	0	0	0	1	0	0	0	13257	739	26	4	1572	4	RFC1	4	39308288	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08		39308288	151845988	14	24488	308	2									
RFC1	5981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	39308289	39308289	+	Missense_Mutation	SNP	C	C	A	rs1135544	alternate_allele	TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	39308289	C	A	39308289	3	1	424	1	0	0	0	0	1	0	0	0	13257	594	21	4	1573	4	RFC1	4	39308289	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	1	39308289	151845987	15	24489	308	2									
KDR	3791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	55979581	55979581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	55979581	A	-	55979581	7	5	424	1	0	1	0	1	0	0	0	0	8146	131	5	0	3300	0	KDR	4	55979581	Frame_Shift_Del	DEL	A	TCGA-BP-5192-01A-01D-1429-08	16671292	55979581	135174695	16	24490											
ANKRD17	26057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	74005971	74005971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	74005971	A	T	74005971	3	4	424	1	0	0	0	0	1	0	0	0	646	11	1	5	5529	5	ANKRD17	4	74005971	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08	18026390	74005971	117148305	17	24491											
FAT4	79633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	126411497	126411497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	126411497	C	T	126411497	3	4	424	1	0	0	0	0	1	0	0	0	5699	739	26	2	13586	2	FAT4	4	126411497	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	52405526	126411497	64742779	18	24492											
CDC25C	995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137665253	137665253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	137665253	A	T	137665253	3	4	424	1	0	0	0	0	1	0	0	0	3066	72	3	5	1191	5	CDC25C	5	137665253	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08		137665253	43250007	19	24493											
PSD2	84249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139193067	139193067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	139193067	C	T	139193067	3	4	424	1	0	0	0	0	1	0	0	0	12657	623	22	2	551	2	PSD2	5	139193067	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	1527814	139193067	41722193	20	24494											
PCDHA12	56137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140255065	140255065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	140255065	T	A	140255065	3	1	424	1	0	0	0	0	1	0	0	0	11529	1493	52	5	10	5	PCDHA12	5	140255065	Missense_Mutation	SNP	T	TCGA-BP-5192-01A-01D-1429-08	1061998	140255065	40660195	21	24495											
PPARGC1B	133522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149216300	149216300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	149216300	G	A	149216300	3	1	424	1	0	0	0	0	1	0	0	0	12308	1145	40	1	2319	1	PPARGC1B	5	149216300	Missense_Mutation	SNP	G	TCGA-BP-5192-01A-01D-1429-08	8961235	149216300	31698960	22	24496											
PHACTR1	221692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	13283726	13283726	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	C	13283726	G	C	13283726	3	2	424	1	0	0	0	0	1	0	0	0	11816	1261	44	4	1624	4	PHACTR1	6	13283726	Missense_Mutation	SNP	G	TCGA-BP-5192-01A-01D-1429-08		13283726	157831341	23	24497											
HLA-DRA	3122	broad.mit.edu;hgsc.bcm.edu	37	6	32410977	32410978	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	32410978	CT	-	32410977	7	5	424	1	0	1	0	1	0	0	0	0	7214	565	20	0	354	0	HLA-DRA	6	32410977	Frame_Shift_Del	DEL	CT	TCGA-BP-5192-01A-01D-1429-08	19127251	32410977	138704090	24	24498											
MRPL14	64928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44081767	44081767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	44081767	G	A	44081767	3	1	424	1	0	0	0	0	1	0	0	0	9786	1087	38	1	190	1	MRPL14	6	44081767	Missense_Mutation	SNP	G	TCGA-BP-5192-01A-01D-1429-08	11670790	44081767	127033300	25	24499											
CSMD1	64478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	3566004	3566004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	3566004	G	A	3566004	3	1	424	1	0	0	0	0	1	0	0	0	3946	1087	38	1	9822	1	CSMD1	8	3566004	Missense_Mutation	SNP	G	TCGA-BP-5192-01A-01D-1429-08		3566004	142798018	26	24500											
WHSC1L1	54904	hgsc.bcm.edu;ucsc.edu	37	8	38139060	38139060	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	38139060	T	-	38139060	7	5	424	1	0	1	0	1	0	0	0	0	17375	1606	56	0	790	0	WHSC1L1	8	38139060	Frame_Shift_Del	DEL	T	TCGA-BP-5192-01A-01D-1429-08	34573056	38139060	108224962	27	24501											
KCNB2	9312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	73480522	73480522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	73480522	A	G	73480522	3	3	424	1	0	0	0	0	1	0	0	0	8020	247	9	3	555	3	KCNB2	8	73480522	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08	35341462	73480522	72883500	28	24502											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113347652	113347652	+	Silent	SNP	G	G	T	rs113449703	alternate_allele	TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	113347652	G	T	113347652	2	4	424	1	0	0	0	0	0	0	0	1	3948	1103	39	4		4	CSMD3	8	113347652	Silent	SNP	G	TCGA-BP-5192-01A-01D-1429-08	39867130	113347652	33016370	29	24503											
LRRC24	441381	broad.mit.edu;hgsc.bcm.edu	37	8	145748563	145748563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	145748563	C	G	145748563	3	3	424	1	0	0	0	0	1	0	0	0	8986	710	25	4	707	4	LRRC24	8	145748563	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	32400911	145748563	615459	30	24504											
NPR2	4882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35808676	35808678	+	In_Frame_Del	DEL	TAC	TAC	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	TAC	TAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	35808678	TAC	-	35808676	7	5	424	1	0	1	0	1	0	0	0	0	10602	1403	49	0	2957	0	NPR2	9	35808676	In_Frame_Del	DEL	TAC	TCGA-BP-5192-01A-01D-1429-08		35808676	105404755	31	24505											
BICD2	23299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95491475	95491475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	95491475	T	A	95491475	3	1	424	1	0	0	0	0	1	0	0	0	1429	1667	58	5	2317	5	BICD2	9	95491475	Missense_Mutation	SNP	T	TCGA-BP-5192-01A-01D-1429-08	59682799	95491475	45721956	32	24506											
STXBP1	6812	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130413898	130413898	+	Silent	SNP	G	G	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	130413898	G	T	130413898	2	4	424	1	0	0	0	0	0	0	0	1	15364	1277	45	4		4	STXBP1	9	130413898	Silent	SNP	G	TCGA-BP-5192-01A-01D-1429-08	34922423	130413898	10799533	33	24507											
CAMSAP1	157922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	138713812	138713812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	138713812	T	G	138713812	3	3	424	1	0	0	0	0	1	0	0	0	2613	1435	50	5	2141	5	CAMSAP1	9	138713812	Missense_Mutation	SNP	T	TCGA-BP-5192-01A-01D-1429-08	8299914	138713812	2499619	34	24508											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61830794	61830794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	61830794	A	G	61830794	3	3	424	1	0	0	0	0	1	0	0	0	622	101	4	3	3629	3	ANK3	10	61830794	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08		61830794	73703953	35	24509											
COL17A1	1308	hgsc.bcm.edu;ucsc.edu	37	10	105815678	105815683	+	In_Frame_Del	DEL	CCATGC	CCATGC	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	CCATGC	CCATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	105815683	CCATGC	-	105815678	7	5	424	1	0	1	0	1	0	0	0	0	3676	855	30	0	3100	0	COL17A1	10	105815678	In_Frame_Del	DEL	CCATGC	TCGA-BP-5192-01A-01D-1429-08	43984884	105815678	29719069	36	24510											
TECTB	6975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	114046095	114046095	+	Silent	SNP	G	G	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	114046095	G	A	114046095	2	1	424	1	0	0	0	0	0	0	0	1	15760	1277	45	2		2	TECTB	10	114046095	Silent	SNP	G	TCGA-BP-5192-01A-01D-1429-08	8230417	114046095	21488652	37	24511											
GPR26	2849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	125426346	125426346	+	Silent	SNP	G	G	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	125426346	G	A	125426346	2	1	424	1	0	0	0	0	0	0	0	1	6691	1074	38	1		1	GPR26	10	125426346	Silent	SNP	G	TCGA-BP-5192-01A-01D-1429-08	11380251	125426346	10108401	38	24512											
PTPRJ	5795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	48152101	48152101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	48152101	A	G	48152101	3	3	424	1	0	0	0	0	1	0	0	0	12817	188	7	3	1478	3	PTPRJ	11	48152101	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08		48152101	86854415	39	24513											
DDB1	1642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61070127	61070127	+	Silent	SNP	T	T	C	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	C	61070127	T	C	61070127	2	2	424	1	0	0	0	0	0	0	0	1	4325	1741	61	3		3	DDB1	11	61070127	Silent	SNP	T	TCGA-BP-5192-01A-01D-1429-08	12918026	61070127	73936389	40	24514											
RACGAP1	29127	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	50384068	50384068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	50384068	A	G	50384068	3	3	424	1	0	0	0	0	1	0	0	0	12990	246	9	3	20	3	RACGAP1	12	50384068	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08		50384068	83467827	41	24515											
TENC1	23371	hgsc.bcm.edu;ucsc.edu	37	12	53453522	53453531	+	Frame_Shift_Del	DEL	GCCTACAGCA	GCCTACAGCA	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	GCCTACAGCA	GCCTACAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	53453531	GCCTACAGCA	-	53453522	7	5	424	1	0	1	0	1	0	0	0	0	15770	1306	46	0	2276	0	TENC1	12	53453522	Frame_Shift_Del	DEL	GCCTACAGCA	TCGA-BP-5192-01A-01D-1429-08	3069454	53453522	80398373	42	24516											
KLC1	3831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	104123884	104123884	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	104123884	T	-	104123884	7	5	424	1	0	1	0	1	0	0	0	0	8340	1739	60	0	269	0	KLC1	14	104123884	Frame_Shift_Del	DEL	T	TCGA-BP-5192-01A-01D-1429-08		104123884	3225656	43	24517											
DISP2	85455	broad.mit.edu	37	15	40660395	40660395	+	Silent	SNP	G	A	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	40660395	A	A	40660395	2	1	424	1	0	0	0	0	0	0	0	1	4542	1306	46	2		2	DISP2	15	40660395	Silent	SNP	G	TCGA-BP-5192-01A-01D-1429-08		40660395	61870997	44	24518											
ZNF280D	54816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	56993407	56993407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	56993407	A	G	56993407	3	3	424	1	0	0	0	0	1	0	0	0	17829	449	16	3	2902	3	ZNF280D	15	56993407	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08	16333012	56993407	45537985	45	24519											
MSLNL	401827	broad.mit.edu;hgsc.bcm.edu	37	16	823128	823128	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	823128	C	T	823128	5	4	424	1	0	0	0	0	0	0	1	0	9889	521	18	2	1049	2	MSLNL	16	823128	Splice_Site	SNP	C	TCGA-BP-5192-01A-01D-1429-08		823128	89531625	46	24520											
LRRC50	0	broad.mit.edu;hgsc.bcm.edu	37	16	84211446	84211446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	84211446	A	G	84211446	3	3	424	1	0	0	0	0	1	0	0	0	9016	433	15	3	2223	3	LRRC50	16	84211446	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08	83388318	84211446	6143307	47	24521											
ASB16	92591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42249555	42249555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	42249555	A	G	42249555	3	3	424	1	0	0	0	0	1	0	0	0	1020	217	8	3	449	3	ASB16	17	42249555	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08		42249555	38945655	48	24522											
C17orf71	0	hgsc.bcm.edu;ucsc.edu	37	17	57292183	57292194	+	In_Frame_Del	DEL	ACCATGTCCGGT	ACCATGTCCGGT	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	ACCATGTCCGGT	ACCATGTCCGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	57292194	ACCATGTCCGGT	-	57292183	7	5	424	1	0	1	0	1	0	0	0	0	1880	146	6	0	2810	0	C17orf71	17	57292183	In_Frame_Del	DEL	ACCATGTCCGGT	TCGA-BP-5192-01A-01D-1429-08	15042628	57292183	23903027	49	24523											
MYOM1	8736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	3089566	3089566	+	Silent	SNP	T	T	C	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	C	3089566	T	C	3089566	2	2	424	1	0	0	0	0	0	0	0	1	10098	1490	52	3		3	MYOM1	18	3089566	Silent	SNP	T	TCGA-BP-5192-01A-01D-1429-08		3089566	74987682	50	24524											
HMHA1	23526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1073241	1073241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	1073241	A	G	1073241	3	3	424	1	0	0	0	0	1	0	0	0	7247	43	2	3	525	3	HMHA1	19	1073241	Missense_Mutation	SNP	A	TCGA-BP-5192-01A-01D-1429-08		1073241	58055742	51	24525											
TMPRSS9	360200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2418067	2418067	+	Silent	SNP	C	C	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	2418067	C	T	2418067	2	4	424	1	0	0	0	0	0	0	0	1	16265	900	32	2		2	TMPRSS9	19	2418067	Silent	SNP	C	TCGA-BP-5192-01A-01D-1429-08	1344826	2418067	56710916	52	24526											
GNAS	2778	broad.mit.edu	37	20	57429540	57429540	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	C	C	C	C	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	57429540	G	G	57429540	3	3	424	1	0	0	0	0	1	0	0	0	6517	507	18	4	1964	4	GNAS	20	57429540	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08		57429540	5595980	53	24527											
LZTR1	8216	hgsc.bcm.edu	37	22	21348927	21348927	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	-	21348927	T	-	21348927	7	5	424	1	0	1	0	1	0	0	0	0	9144	1696	59	0	1754	0	LZTR1	22	21348927	Frame_Shift_Del	DEL	T	TCGA-BP-5192-01A-01D-1429-08		21348927	29955639	54	24528											
SHROOM4	57477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	50341293	50341293	+	Silent	SNP	G	G	A	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	A	50341293	G	A	50341293	2	1	424	1	0	0	0	0	0	0	0	1	14309	1310	46	2		2	SHROOM4	23	50341293	Silent	SNP	G	TCGA-BP-5192-01A-01D-1429-08		50341293	104929267	55	24529											
MAGT1	84061	broad.mit.edu;hgsc.bcm.edu	37	X	77096799	77096799	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	G	77096799	C	G	77096799	3	3	424	1	0	0	0	0	1	0	0	0	9203	855	30	4	174	4	MAGT1	23	77096799	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	26755506	77096799	78173761	56	24530											
COL4A5	1287	broad.mit.edu;hgsc.bcm.edu	37	X	107849993	107849993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5192-01A-01D-1429-08	TCGA-BP-5192-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4db23b76-46dd-4ed9-a168-fee43b2fc7d7	1112896b-009d-48ae-a579-55290043345a	T	107849993	C	T	107849993	3	4	424	1	0	0	0	0	1	0	0	0	3696	507	18	2	2380	2	COL4A5	23	107849993	Missense_Mutation	SNP	C	TCGA-BP-5192-01A-01D-1429-08	30753194	107849993	47420567	57	24531											
HEATR5B	54497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	37255866	37255866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	37255866	G	A	37255866	3	1	425	1	0	0	0	0	1	0	0	0	7039	1290	45	2	2712	2	HEATR5B	2	37255866	Missense_Mutation	SNP	G	TCGA-BP-5194-01A-02D-1429-08		37255866	205943507	1	24532											
AFF3	3899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	100199360	100199360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	T	100199360	G	T	100199360	3	4	425	1	0	0	0	0	1	0	0	0	358	942	33	4	1023	4	AFF3	2	100199360	Missense_Mutation	SNP	G	TCGA-BP-5194-01A-02D-1429-08	62943494	100199360	143000013	2	24533											
CCDC148	130940	broad.mit.edu;ucsc.edu	37	2	159312934	159312934	+	Silent	SNP	A	T	T	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	T	159312934	T	T	159312934	2	4	425	1	0	0	0	0	0	0	0	1	2784	59	3	5		5	CCDC148	2	159312934	Silent	SNP	A	TCGA-BP-5194-01A-02D-1429-08	59113574	159312934	83886439	3	24534											
IL17RE	132014	broad.mit.edu	37	3	9957050	9957050	+	Silent	SNP	C	T	T	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	T	9957050	T	T	9957050	2	4	425	1	0	0	0	0	0	0	0	1	7650	535	19	1		1	IL17RE	3	9957050	Silent	SNP	C	TCGA-BP-5194-01A-02D-1429-08		9957050	188065380	4	24535											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10191642	10191643	+	Frame_Shift_Del	DEL	GA	-	-	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	-	10191643	-	-	10191642	7	5	425	1	0	1	0	1	0	0	0	0	17174	1174	41	0	645	0	VHL	3	10191642	Frame_Shift_Del	DEL	GA	TCGA-BP-5194-01A-02D-1429-08	234592	10191642	187830788	5	24536											
C3orf70	285382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184801263	184801263	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	C	184801263	A	C	184801263	3	2	425	1	0	0	0	0	1	0	0	0	2244	242	9	5	471	5	C3orf70	3	184801263	Missense_Mutation	SNP	A	TCGA-BP-5194-01A-02D-1429-08	174609621	184801263	13221167	6	24537											
BRPF3	27154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36198303	36198303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	T	36198303	G	T	36198303	3	4	425	1	0	0	0	0	1	0	0	0	1523	1029	36	4	3581	4	BRPF3	6	36198303	Missense_Mutation	SNP	G	TCGA-BP-5194-01A-02D-1429-08		36198303	134916764	7	24538											
C8orf44	56260	broad.mit.edu	37	8	67590120	67590120	+	Silent	SNP	C	A	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	67590120	A	A	67590120	2	1	425	1	0	0	0	0	0	0	0	1	2431	813	29	4		4	C8orf44	8	67590120	Silent	SNP	C	TCGA-BP-5194-01A-02D-1429-08		67590120	78773902	8	24539											
WEE1	7465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	9610146	9610146	+	Silent	SNP	C	C	T	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	T	9610146	C	T	9610146	2	4	425	1	0	0	0	0	0	0	0	1	17356	576	20	2		2	WEE1	11	9610146	Silent	SNP	C	TCGA-BP-5194-01A-02D-1429-08		9610146	125396370	9	24540											
MAP3K11	4296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65375920	65375920	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	65375920	C	A	65375920	5	1	425	1	0	0	0	0	0	0	1	0	9252	579	20	4	1840	4	MAP3K11	11	65375920	Splice_Site	SNP	C	TCGA-BP-5194-01A-02D-1429-08	55765774	65375920	69630596	10	24541											
KRT2	3849	broad.mit.edu;ucsc.edu	37	12	53045802	53045802	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	T	53045802	T	T	53045802	3	4	425	1	0	0	0	0	1	0	0	0	8464	710	25	2	1830	2	KRT2	12	53045802	Missense_Mutation	SNP	C	TCGA-BP-5194-01A-02D-1429-08		53045802	80806093	11	24542											
RNF10	9921	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121004766	121004766	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	C	121004766	G	C	121004766	3	2	425	1	0	0	0	0	1	0	0	0	13435	1029	36	4	2074	4	RNF10	12	121004766	Missense_Mutation	SNP	G	TCGA-BP-5194-01A-02D-1429-08	67958964	121004766	12847129	12	24543											
RGS6	9628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	72925078	72925078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	72925078	G	A	72925078	3	1	425	1	0	0	0	0	1	0	0	0	13322	1145	40	1	349	1	RGS6	14	72925078	Missense_Mutation	SNP	G	TCGA-BP-5194-01A-02D-1429-08		72925078	34424462	13	24544											
CCDC88C	440193	broad.mit.edu;hgsc.bcm.edu	37	14	91755525	91755525	+	Silent	SNP	G	G	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	91755525	G	A	91755525	2	1	425	1	0	0	0	0	0	0	0	1	2867	1103	39	1		1	CCDC88C	14	91755525	Silent	SNP	G	TCGA-BP-5194-01A-02D-1429-08	18830447	91755525	15594015	14	24545											
SLC28A2	9153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45559673	45559673	+	Silent	SNP	C	C	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	45559673	C	A	45559673	2	1	425	1	0	0	0	0	0	0	0	1	14545	845	30	4		4	SLC28A2	15	45559673	Silent	SNP	C	TCGA-BP-5194-01A-02D-1429-08		45559673	56971719	15	24546											
SRL	6345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4247843	4247843	+	Silent	SNP	G	G	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	4247843	G	A	4247843	2	1	425	1	0	0	0	0	0	0	0	1	15162	1020	36	2		2	SRL	16	4247843	Silent	SNP	G	TCGA-BP-5194-01A-02D-1429-08		4247843	86106910	16	24547											
GGA2	23062	hgsc.bcm.edu;ucsc.edu	37	16	23481417	23481417	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	-	23481417	C	-	23481417	7	5	425	1	0	1	0	1	0	0	0	0	6360	855	30	0	333	0	GGA2	16	23481417	Frame_Shift_Del	DEL	C	TCGA-BP-5194-01A-02D-1429-08	19233574	23481417	66873336	17	24548											
VPS35	55737	broad.mit.edu;hgsc.bcm.edu	37	16	46717480	46717480	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	G	46717480	C	G	46717480	3	3	425	1	0	0	0	0	1	0	0	0	17215	796	28	4	2412	4	VPS35	16	46717480	Missense_Mutation	SNP	C	TCGA-BP-5194-01A-02D-1429-08	23236063	46717480	43637273	18	24549											
POLR2C	5432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57503112	57503112	+	Silent	SNP	G	G	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	57503112	G	A	57503112	2	1	425	1	0	0	0	0	0	0	0	1	12223	1103	39	1		1	POLR2C	16	57503112	Silent	SNP	G	TCGA-BP-5194-01A-02D-1429-08	10785632	57503112	32851641	19	24550											
TMEM132E	124842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	32953491	32953491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	T	32953491	C	T	32953491	3	4	425	1	0	0	0	0	1	0	0	0	16060	893	31	1	419	1	TMEM132E	17	32953491	Missense_Mutation	SNP	C	TCGA-BP-5194-01A-02D-1429-08		32953491	48241719	20	24551											
HOXB1	3211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	46607033	46607033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	T	46607033	C	T	46607033	3	4	425	1	0	0	0	0	1	0	0	0	7306	768	27	1	127	1	HOXB1	17	46607033	Missense_Mutation	SNP	C	TCGA-BP-5194-01A-02D-1429-08	13653542	46607033	34588177	21	24552											
TBCD	6904	broad.mit.edu	37	17	80863900	80863900	+	Silent	SNP	C	A	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	80863900	A	A	80863900	2	1	425	1	0	0	0	0	0	0	0	1	15645	668	24	4		4	TBCD	17	80863900	Silent	SNP	C	TCGA-BP-5194-01A-02D-1429-08	34256867	80863900	331310	22	24553											
VN1R2	317701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53762110	53762110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	53762110	G	A	53762110	3	1	425	1	0	0	0	0	1	0	0	0	17191	1174	41	2	484	2	VN1R2	19	53762110	Missense_Mutation	SNP	G	TCGA-BP-5194-01A-02D-1429-08		53762110	5366873	23	24554	309	2									
VN1R2	317701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53762116	53762116	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	T	53762116	A	T	53762116	3	4	425	1	0	0	0	0	1	0	0	0	17191	14	1	5	490	5	VN1R2	19	53762116	Missense_Mutation	SNP	A	TCGA-BP-5194-01A-02D-1429-08	6	53762116	5366867	24	24555	309	2									
LBP	3929	hgsc.bcm.edu	37	20	36982823	36982823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	G	36982823	A	G	36982823	3	3	425	1	0	0	0	0	1	0	0	0	8658	217	8	3	522	3	LBP	20	36982823	Missense_Mutation	SNP	A	TCGA-BP-5194-01A-02D-1429-08		36982823	26042697	25	24556											
CCDC22	28952	broad.mit.edu;hgsc.bcm.edu	37	X	49105114	49105114	+	Silent	SNP	G	G	A	rs138555929	byfrequency	TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	49105114	G	A	49105114	2	1	425	1	0	0	0	0	0	0	0	1	2799	1335	47	2		2	CCDC22	23	49105114	Silent	SNP	G	TCGA-BP-5194-01A-02D-1429-08		49105114	106165446	26	24557											
CXorf66	347487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	139040297	139040297	+	Silent	SNP	G	G	A	novel		TCGA-BP-5194-01A-02D-1429-08	TCGA-BP-5194-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b52c97e-fdd2-4ae2-b036-297feeb1c7e2	cc2ef7bc-8810-4162-b19a-65a940beac26	A	139040297	G	A	139040297	2	1	425	1	0	0	0	0	0	0	0	1	4120	1280	45	2		2	CXorf66	23	139040297	Silent	SNP	G	TCGA-BP-5194-01A-02D-1429-08	89935183	139040297	16230263	27	24558											
ANGPTL7	10218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11254587	11254587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	11254587	C	A	11254587	3	1	426	1	0	0	0	0	1	0	0	0	619	884	31	4	756	4	ANGPTL7	1	11254587	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08		11254587	237996034	1	24559											
PAFAH2	5051	broad.mit.edu;hgsc.bcm.edu	37	1	26288568	26288568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	26288568	T	G	26288568	3	3	426	1	0	0	0	0	1	0	0	0	11394	1841	64	5	91	5	PAFAH2	1	26288568	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08	15033981	26288568	222962053	2	24560											
WASF2	10163	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	27739130	27739130	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	27739130	A	T	27739130	3	4	426	1	0	0	0	0	1	0	0	0	17265	304	11	5	748	5	WASF2	1	27739130	Missense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08	1450562	27739130	221511491	3	24561											
CHIA	27159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111861178	111861178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	111861178	C	A	111861178	3	1	426	1	0	0	0	0	1	0	0	0	3344	623	22	4	823	4	CHIA	1	111861178	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08	84122048	111861178	137389443	4	24562											
ASH1L	55870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155313396	155313396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	155313396	T	C	155313396	3	2	426	1	0	0	0	0	1	0	0	0	1041	1855	64	3	799	3	ASH1L	1	155313396	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08	43452218	155313396	93937225	5	24563											
ITSN2	50618	broad.mit.edu;hgsc.bcm.edu	37	2	24494732	24494732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	24494732	C	G	24494732	3	3	426	1	0	0	0	0	1	0	0	0	7934	680	24	4	3072	4	ITSN2	2	24494732	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08		24494732	218704641	6	24564											
CALM2	805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	47389525	47389525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	47389525	C	T	47389525	3	4	426	1	0	0	0	0	1	0	0	0	2587	739	26	2	276	2	CALM2	2	47389525	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08	22894793	47389525	195809848	7	24565											
GYPC	2995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	127453643	127453643	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	127453643	T	G	127453643	3	3	426	1	0	0	0	0	1	0	0	0	6917	1693	59	5	326	5	GYPC	2	127453643	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08	80064118	127453643	115745730	8	24566											
KCNH7	90134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	163695012	163695012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	163695012	C	G	163695012	3	3	426	1	0	0	0	0	1	0	0	0	8044	623	22	4	3703	4	KCNH7	2	163695012	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08	36241369	163695012	79504361	9	24567											
SESTD1	91404	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179979860	179979860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	179979860	T	C	179979860	3	2	426	1	0	0	0	0	1	0	0	0	14140	1638	57	3	331	3	SESTD1	2	179979860	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08	16284848	179979860	63219513	10	24568											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10183863	10183863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	10183863	G	A	10183863	3	1	426	1	0	0	0	0	1	0	0	0	17174	971	34	2	334	2	VHL	3	10183863	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08		10183863	187838567	11	24569											
AMBN	258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71469169	71469169	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	71469169	A	C	71469169	3	2	426	1	0	0	0	0	1	0	0	0	563	14	1	5	787	5	AMBN	4	71469169	Missense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08		71469169	119685107	12	24570											
GPBP1	65056	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	56558502	56558502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	56558502	A	G	56558502	3	3	426	1	0	0	0	0	1	0	0	0	6602	188	7	3	1408	3	GPBP1	5	56558502	Missense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08		56558502	124356758	13	24571											
C5orf44	80006	broad.mit.edu;hgsc.bcm.edu	37	5	64946709	64946709	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	64946709	G	C	64946709	3	2	426	1	0	0	0	0	1	0	0	0	2305	1014	35	4	523	4	C5orf44	5	64946709	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08	8388207	64946709	115968551	14	24572											
SNRNP48	154007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7594021	7594021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	7594021	T	A	7594021	3	1	426	1	0	0	0	0	1	0	0	0	14870	1838	64	5	217	5	SNRNP48	6	7594021	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08		7594021	163521046	15	24573											
FHL5	9457	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	97052642	97052642	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	97052642	A	T	97052642	3	4	426	1	0	0	0	0	1	0	0	0	5888	275	10	5	182	5	FHL5	6	97052642	Missense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08	89458621	97052642	74062425	16	24574											
ZNF804B	219578	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	88963886	88963886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	88963886	T	G	88963886	3	3	426	1	0	0	0	0	1	0	0	0	18183	1490	52	5	1604	5	ZNF804B	7	88963886	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08		88963886	70174777	17	24575											
MTERF	7978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	91503200	91503200	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	91503200	A	C	91503200	3	2	426	1	0	0	0	0	1	0	0	0	9925	72	3	5	295	5	MTERF	7	91503200	Missense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08	2539314	91503200	67635463	18	24576											
WRN	7486	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	30977877	30977877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	30977877	G	A	30977877	3	1	426	1	0	0	0	0	1	0	0	0	17414	1261	44	2	2645	2	WRN	8	30977877	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08		30977877	115386145	19	24577											
MTSS1	9788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125568525	125568525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	125568525	G	A	125568525	3	1	426	1	0	0	0	0	1	0	0	0	9969	1319	46	2	927	2	MTSS1	8	125568525	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08	94590648	125568525	20795497	20	24578											
GTF3C5	9328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	135926204	135926204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	135926204	A	G	135926204	3	3	426	1	0	0	0	0	1	0	0	0	6883	246	9	3	621	3	GTF3C5	9	135926204	Missense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08		135926204	5287227	21	24579											
PITRM1	10531	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	3209166	3209166	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	3209166	A	C	3209166	4	2	426	1	0	0	0	0	0	1	0	0	11960	108	4	5	2985	5	PITRM1	10	3209166	Nonsense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08		3209166	132325581	22	24580											
ANKRD30A	91074	broad.mit.edu;hgsc.bcm.edu	37	10	37418819	37418819	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	37418819	A	G	37418819	5	3	426	1	0	0	0	0	0	0	1	0	658	434	15	3	58	3	ANKRD30A	10	37418819	Splice_Site	SNP	A	TCGA-BP-5195-01A-02D-1429-08	34209653	37418819	98115928	23	24581											
ATRNL1	26033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	117024695	117024695	+	Silent	SNP	A	A	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	117024695	A	G	117024695	2	3	426	1	0	0	0	0	0	0	0	1	1207	117	5	3		3	ATRNL1	10	117024695	Silent	SNP	A	TCGA-BP-5195-01A-02D-1429-08	79605876	117024695	18510052	24	24582											
PNLIP	5406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	118318744	118318744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	118318744	G	T	118318744	3	4	426	1	0	0	0	0	1	0	0	0	12156	1290	45	4	1043	4	PNLIP	10	118318744	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08	1294049	118318744	17216003	25	24583											
KRTAP5-1	387264	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1605898	1605898	+	Silent	SNP	C	C	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	1605898	C	T	1605898	2	4	426	1	0	0	0	0	0	0	0	1	8565	680	24	2		2	KRTAP5-1	11	1605898	Silent	SNP	C	TCGA-BP-5195-01A-02D-1429-08		1605898	133400618	26	24584											
OR52E4	390081	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5906001	5906001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	5906001	C	T	5906001	3	4	426	1	0	0	0	0	1	0	0	0	11123	594	21	2	481	2	OR52E4	11	5906001	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08	4300103	5906001	129100515	27	24585											
SOX6	55553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	16133398	16133398	+	Silent	SNP	A	A	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	16133398	A	G	16133398	2	3	426	1	0	0	0	0	0	0	0	1	14968	175	7	3		3	SOX6	11	16133398	Silent	SNP	A	TCGA-BP-5195-01A-02D-1429-08	10227397	16133398	118873118	28	24586											
DGKZ	8525	broad.mit.edu;hgsc.bcm.edu	37	11	46389268	46389268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	46389268	G	A	46389268	3	1	426	1	0	0	0	0	1	0	0	0	4476	1348	47	2	1358	2	DGKZ	11	46389268	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08	30255870	46389268	88617248	29	24587											
OR4A15	81328	broad.mit.edu;hgsc.bcm.edu	37	11	55135733	55135733	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	55135733	G	C	55135733	3	2	426	1	0	0	0	0	1	0	0	0	11047	1377	48	4	376	4	OR4A15	11	55135733	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08	8746465	55135733	79870783	30	24588											
FAT3	120114	broad.mit.edu;ucsc.edu	37	11	92532099	92532099	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	92532099	A	A	92532099	3	1	426	1	0	0	0	0	1	0	0	0	5698	943	33	2	5954	2	FAT3	11	92532099	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08	37396366	92532099	42474417	31	24589											
KBTBD3	143879	hgsc.bcm.edu;ucsc.edu	37	11	105924485	105924486	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	-	105924486	TA	-	105924485	7	5	426	1	0	1	0	1	0	0	0	0	8001	1638	57	0	911	0	KBTBD3	11	105924485	Frame_Shift_Del	DEL	TA	TCGA-BP-5195-01A-02D-1429-08	13392386	105924485	29082031	32	24590											
HSPA8	3312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	122929405	122929405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	122929405	A	G	122929405	3	3	426	1	0	0	0	0	1	0	0	0	7423	304	11	3	495	3	HSPA8	11	122929405	Missense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08	17004920	122929405	12077111	33	24591											
ABCC9	10060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	22069954	22069954	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	22069954	T	C	22069954	3	2	426	1	0	0	0	0	1	0	0	0	59	1841	64	3	4441	3	ABCC9	12	22069954	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08		22069954	111781941	34	24592											
RASSF9	9182	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	86199447	86199447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	86199447	A	C	86199447	3	2	426	1	0	0	0	0	1	0	0	0	13106	131	5	5	970	5	RASSF9	12	86199447	Missense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08	64129493	86199447	47652448	35	24593											
SBNO1	55206	hgsc.bcm.edu;ucsc.edu	37	12	123794374	123794377	+	Frame_Shift_Del	DEL	TATT	TATT	-	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	TATT	TATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	-	123794377	TATT	-	123794374	7	5	426	1	0	1	0	1	0	0	0	0	13875	1530	53	0	884	0	SBNO1	12	123794374	Frame_Shift_Del	DEL	TATT	TCGA-BP-5195-01A-02D-1429-08	37594927	123794374	10057521	36	24594											
TPTE2	93492	broad.mit.edu	37	13	20077377	20077377	+	Translation_Start_Site	SNP	G	A	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	20077377	A	A	20077377	1	1	426	1	0	0	0	0	0	0	0	0	16443	1160	40	1		1	TPTE2	13	20077377	Translation_Start_Site	SNP	G	TCGA-BP-5195-01A-02D-1429-08		20077377	95092501	37	24595											
ZMYM2	7750	broad.mit.edu;ucsc.edu	37	13	20601355	20601355	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	20601355	G	G	20601355	3	3	426	1	0	0	0	0	1	0	0	0	17712	1493	52	5	1774	5	ZMYM2	13	20601355	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08	523978	20601355	94568523	38	24596											
FAM123A	0	broad.mit.edu;hgsc.bcm.edu	37	13	25745612	25745612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	25745612	C	T	25745612	3	4	426	1	0	0	0	0	1	0	0	0	5426	478	17	2	1873	2	FAM123A	13	25745612	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08	5144257	25745612	89424266	39	24597											
ATP8A2	51761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	26152975	26152975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	26152975	T	C	26152975	3	2	426	1	0	0	0	0	1	0	0	0	1193	1609	56	3	1887	3	ATP8A2	13	26152975	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08	407363	26152975	89016903	40	24598											
ABCC4	10257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	95838971	95838971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	95838971	G	A	95838971	3	1	426	1	0	0	0	0	1	0	0	0	55	971	34	2	2581	2	ABCC4	13	95838971	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08	69685996	95838971	19330907	41	24599											
NYNRIN	57523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24878974	24878974	+	Silent	SNP	A	A	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	24878974	A	T	24878974	2	4	426	1	0	0	0	0	0	0	0	1	10803	175	7	5		5	NYNRIN	14	24878974	Silent	SNP	A	TCGA-BP-5195-01A-02D-1429-08		24878974	82470566	42	24600											
SERPINA9	327657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94936172	94936172	+	Silent	SNP	T	T	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	94936172	T	C	94936172	2	2	426	1	0	0	0	0	0	0	0	1	14108	1451	51	3		3	SERPINA9	14	94936172	Silent	SNP	T	TCGA-BP-5195-01A-02D-1429-08	70057198	94936172	12413368	43	24601											
GANC	2595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42632072	42632072	+	Silent	SNP	G	G	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	42632072	G	A	42632072	2	1	426	1	0	0	0	0	0	0	0	1	6241	1364	48	2		2	GANC	15	42632072	Silent	SNP	G	TCGA-BP-5195-01A-02D-1429-08		42632072	59899320	44	24602											
PRSS21	10942	broad.mit.edu;ucsc.edu	37	16	2871075	2871075	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	2871075	T	T	2871075	3	4	426	1	0	0	0	0	1	0	0	0	12628	1319	46	4	688	4	PRSS21	16	2871075	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08		2871075	87483678	45	24603											
KIAA0430	9665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15719413	15719413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	15719413	C	A	15719413	3	1	426	1	0	0	0	0	1	0	0	0	8184	478	17	4	3542	4	KIAA0430	16	15719413	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08	12848338	15719413	74635340	46	24604											
ITGAL	3683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30495241	30495241	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	30495241	C	G	30495241	3	3	426	1	0	0	0	0	1	0	0	0	7893	477	17	4	846	4	ITGAL	16	30495241	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08	14775828	30495241	59859512	47	24605											
CDH8	1006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	61851421	61851421	+	Silent	SNP	C	C	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	61851421	C	A	61851421	2	1	426	1	0	0	0	0	0	0	0	1	3118	813	29	4		4	CDH8	16	61851421	Silent	SNP	C	TCGA-BP-5195-01A-02D-1429-08	31356180	61851421	28503332	48	24606											
GOSR1	9527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	28849291	28849291	+	Silent	SNP	C	C	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	28849291	C	T	28849291	2	4	426	1	0	0	0	0	0	0	0	1	6584	477	17	2		2	GOSR1	17	28849291	Silent	SNP	C	TCGA-BP-5195-01A-02D-1429-08		28849291	52345919	49	24607											
TAF15	8148	hgsc.bcm.edu	37	17	34171624	34171650	+	In_Frame_Del	DEL	AGAAGTGGGGGCGGCTATGGTGGAGAC	AGAAGTGGGGGCGGCTATGGTGGAGAC	-	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	AGAAGTGGGGGCGGCTATGGTGGAGAC	AGAAGTGGGGGCGGCTATGGTGGAGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	-	34171650	AGAAGTGGGGGCGGCTATGGTGGAGAC	-	34171624	7	5	426	1	0	1	0	1	0	0	0	0	15530	412	15	0	1379	0	TAF15	17	34171624	In_Frame_Del	DEL	AGAAGTGGGGGCGGCTATGGTGGAGAC	TCGA-BP-5195-01A-02D-1429-08	5322333	34171624	47023586	50	24608											
AOC2	314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40997546	40997546	+	Silent	SNP	T	T	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	40997546	T	C	40997546	2	2	426	1	0	0	0	0	0	0	0	1	727	1538	54	3		3	AOC2	17	40997546	Silent	SNP	T	TCGA-BP-5195-01A-02D-1429-08	6825922	40997546	40197664	51	24609											
MEP1B	4225	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	29775406	29775406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	29775406	A	G	29775406	3	3	426	1	0	0	0	0	1	0	0	0	9483	412	15	3	226	3	MEP1B	18	29775406	Missense_Mutation	SNP	A	TCGA-BP-5195-01A-02D-1429-08		29775406	48301842	52	24610											
BCL2	596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	60985489	60985489	+	Silent	SNP	G	G	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	60985489	G	A	60985489	2	1	426	1	0	0	0	0	0	0	0	1	1365	929	33	2		2	BCL2	18	60985489	Silent	SNP	G	TCGA-BP-5195-01A-02D-1429-08	31210083	60985489	17091759	53	24611											
KLHL26	55295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18778755	18778755	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	18778755	C	G	18778755	3	3	426	1	0	0	0	0	1	0	0	0	8388	893	31	4	558	4	KLHL26	19	18778755	Missense_Mutation	SNP	C	TCGA-BP-5195-01A-02D-1429-08		18778755	40350228	54	24612											
PSG3	5671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	43243171	43243171	+	Silent	SNP	A	A	T	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	T	43243171	A	T	43243171	2	4	426	1	0	0	0	0	0	0	0	1	12666	1	1	5		5	PSG3	19	43243171	Silent	SNP	A	TCGA-BP-5195-01A-02D-1429-08	24464416	43243171	15885812	55	24613											
RSPH6A	81492	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46317992	46317992	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	G	46317992	T	G	46317992	3	3	426	1	0	0	0	0	1	0	0	0	13720	1580	55	5	1734	5	RSPH6A	19	46317992	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08	3074821	46317992	12810991	56	24614											
ZNF83	55769	broad.mit.edu;hgsc.bcm.edu	37	19	53116221	53116221	+	RNA	SNP	T	T	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	53116221	T	A	53116221	1	1	426	0	1	0	0	0	0	0	0	0	18195	1508	52	5		5	ZNF83	19	53116221	RNA	SNP	T	TCGA-BP-5195-01A-02D-1429-08	6798229	53116221	6012762	57	24615											
LRRC3	81543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	45876771	45876771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	45876771	G	A	45876771	3	1	426	1	0	0	0	0	1	0	0	0	8991	1116	39	1	246	1	LRRC3	21	45876771	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08		45876771	2253124	58	24616											
MN1	4330	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	28192870	28192870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	A	28192870	G	A	28192870	3	1	426	1	0	0	0	0	1	0	0	0	9680	1319	46	2	308	2	MN1	22	28192870	Missense_Mutation	SNP	G	TCGA-BP-5195-01A-02D-1429-08		28192870	23111696	59	24617											
MOV10L1	54456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50538014	50538014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5195-01A-02D-1429-08	TCGA-BP-5195-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2ab2f01-3744-434a-b5b6-0f22599c9a17	0c1904c4-02ca-4be4-8983-4dd9f3b71eaa	C	50538014	T	C	50538014	3	2	426	1	0	0	0	0	1	0	0	0	9726	1580	55	3	476	3	MOV10L1	22	50538014	Missense_Mutation	SNP	T	TCGA-BP-5195-01A-02D-1429-08	22345144	50538014	766552	60	24618											
PRAMEF2	65122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12919829	12919829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	12919829	C	T	12919829	3	4	427	1	0	0	0	0	1	0	0	0	12445	536	19	1	575	1	PRAMEF2	1	12919829	Missense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08		12919829	236330792	1	24619											
AIM1L	55057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26664087	26664087	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	26664087	C	A	26664087	4	1	427	1	0	0	0	0	0	1	0	0	431	922	32	4	1447	4	AIM1L	1	26664087	Nonsense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08	13744258	26664087	222586534	2	24620											
CGN	57530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151496775	151496775	+	Silent	SNP	C	C	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	151496775	C	T	151496775	2	4	427	1	0	0	0	0	0	0	0	1	3305	796	28	2		2	CGN	1	151496775	Silent	SNP	C	TCGA-BP-5196-01A-01D-1429-08	124832688	151496775	97753846	3	24621											
RUSC1	23623	hgsc.bcm.edu;ucsc.edu	37	1	155292322	155292330	+	In_Frame_Del	DEL	ACACTGGTT	ACACTGGTT	-	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	ACACTGGTT	ACACTGGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	-	155292330	ACACTGGTT	-	155292322	7	5	427	1	0	1	0	1	0	0	0	0	13763	43	2	0	760	0	RUSC1	1	155292322	In_Frame_Del	DEL	ACACTGGTT	TCGA-BP-5196-01A-01D-1429-08	3795547	155292322	93958299	4	24622											
CAMSAP1L1	0	hgsc.bcm.edu;ucsc.edu	37	1	200801906	200801912	+	Frame_Shift_Del	DEL	AAGAATA	AAGAATA	-	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	AAGAATA	AAGAATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	-	200801912	AAGAATA	-	200801906	7	5	427	1	0	1	0	1	0	0	0	0	2614	130	5	0	882	0	CAMSAP1L1	1	200801906	Frame_Shift_Del	DEL	AAGAATA	TCGA-BP-5196-01A-01D-1429-08	45509584	200801906	48448715	5	24623											
SYT2	127833	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	202566077	202566077	+	Silent	SNP	C	C	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	202566077	C	T	202566077	2	4	427	1	0	0	0	0	0	0	0	1	15486	581	21	2		2	SYT2	1	202566077	Silent	SNP	C	TCGA-BP-5196-01A-01D-1429-08	1764171	202566077	46684544	6	24624											
FBXO28	23219	hgsc.bcm.edu;ucsc.edu	37	1	224345385	224345385	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	-	224345385	A	-	224345385	7	5	427	1	0	1	0	1	0	0	0	0	5745	233	9	0	1062	0	FBXO28	1	224345385	Frame_Shift_Del	DEL	A	TCGA-BP-5196-01A-01D-1429-08	21779308	224345385	24905236	7	24625											
PTCD3	55037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	86361451	86361451	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	86361451	T	A	86361451	3	1	427	1	0	0	0	0	1	0	0	0	12739	1580	55	5	1658	5	PTCD3	2	86361451	Missense_Mutation	SNP	T	TCGA-BP-5196-01A-01D-1429-08		86361451	156837922	8	24626											
ZEB2	9839	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	145157442	145157442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	145157442	G	A	145157442	3	1	427	1	0	0	0	0	1	0	0	0	17636	1319	46	2	2344	2	ZEB2	2	145157442	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08	58795991	145157442	98041931	9	24627											
MYO1B	4430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	192214900	192214900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	192214900	G	T	192214900	3	4	427	1	0	0	0	0	1	0	0	0	10076	1174	41	4	533	4	MYO1B	2	192214900	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08	47057458	192214900	50984473	10	24628											
CCDC150	284992	hgsc.bcm.edu;ucsc.edu	37	2	197594682	197594683	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	197594683	-	T	197594682	7	5	427	1	0	1	1	0	0	0	0	0	2787	927	32	0	2920	0	CCDC150	2	197594682	Frame_Shift_Ins	INS	-	TCGA-BP-5196-01A-01D-1429-08	5379782	197594682	45604691	11	24629											
CLK1	1195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	201721535	201721535	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	201721535	C	A	201721535	5	1	427	1	0	0	0	0	0	0	1	0	3538	927	32	4	547	4	CLK1	2	201721535	Splice_Site	SNP	C	TCGA-BP-5196-01A-01D-1429-08	4126853	201721535	41477838	12	24630											
SH3BP4	23677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	235951396	235951396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	235951396	G	T	235951396	3	4	427	1	0	0	0	0	1	0	0	0	14259	1310	46	4	1989	4	SH3BP4	2	235951396	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08	34229861	235951396	7247977	13	24631											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10188309	10188309	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	C	10188309	C	C	10188309	3	2	427	1	0	0	0	0	1	0	0	0	17174	1435	50	3	458	3	VHL	3	10188309	Missense_Mutation	SNP	T	TCGA-BP-5196-01A-01D-1429-08		10188309	187834121	14	24632											
TRAT1	50852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	108572578	108572578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	108572578	C	A	108572578	3	1	427	1	0	0	0	0	1	0	0	0	16478	711	25	4	437	4	TRAT1	3	108572578	Missense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08	98384269	108572578	89449852	15	24633											
GRID2	2895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	94316836	94316836	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	C	94316836	G	C	94316836	3	2	427	1	0	0	0	0	1	0	0	0	6779	1261	44	4	1358	4	GRID2	4	94316836	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08		94316836	96837440	16	24634											
PDZD2	23037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32052785	32052785	+	Silent	SNP	C	C	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	32052785	C	T	32052785	2	4	427	1	0	0	0	0	0	0	0	1	11708	813	29	2		2	PDZD2	5	32052785	Silent	SNP	C	TCGA-BP-5196-01A-01D-1429-08		32052785	148862475	17	24635											
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127609608	127609608	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	127609608	A	T	127609608	4	4	427	1	0	0	0	0	0	1	0	0	5710	273	10	5	994	5	FBN2	5	127609608	Nonsense_Mutation	SNP	A	TCGA-BP-5196-01A-01D-1429-08	95556823	127609608	53305652	18	24636											
RAPGEF6	51735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	130897689	130897689	+	Silent	SNP	C	C	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	130897689	C	T	130897689	2	4	427	1	0	0	0	0	0	0	0	1	13061	796	28	2		2	RAPGEF6	5	130897689	Silent	SNP	C	TCGA-BP-5196-01A-01D-1429-08	3288081	130897689	50017571	19	24637											
SLC34A1	6569	hgsc.bcm.edu;ucsc.edu	37	5	176813524	176813526	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	-	176813526	CAG	-	176813524	7	5	427	1	0	1	0	1	0	0	0	0	14580	581	21	0	503	0	SLC34A1	5	176813524	In_Frame_Del	DEL	CAG	TCGA-BP-5196-01A-01D-1429-08	45915835	176813524	4101736	20	24638											
WRNIP1	56897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	2784577	2784577	+	Silent	SNP	G	G	A	rs150885902		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	2784577	G	A	2784577	2	1	427	1	0	0	0	0	0	0	0	1	17415	1132	40	1		1	WRNIP1	6	2784577	Silent	SNP	G	TCGA-BP-5196-01A-01D-1429-08		2784577	168330490	21	24639											
TMEM30A	55754	broad.mit.edu;hgsc.bcm.edu	37	6	75968691	75968691	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	C	75968691	G	C	75968691	3	2	427	1	0	0	0	0	1	0	0	0	16165	1203	42	4	396	4	TMEM30A	6	75968691	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08	73184114	75968691	95146376	22	24640											
PHIP	55023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	79708068	79708068	+	Silent	SNP	G	G	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	79708068	G	A	79708068	2	1	427	1	0	0	0	0	0	0	0	1	11849	1280	45	2		2	PHIP	6	79708068	Silent	SNP	G	TCGA-BP-5196-01A-01D-1429-08	3739377	79708068	91406999	23	24641											
TWISTNB	221830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	19737956	19737956	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	G	19737956	T	G	19737956	3	3	427	1	0	0	0	0	1	0	0	0	16796	1792	62	5	20	5	TWISTNB	7	19737956	Missense_Mutation	SNP	T	TCGA-BP-5196-01A-01D-1429-08		19737956	139400707	24	24642											
ZNF395	55893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	28206650	28206650	+	Silent	SNP	A	A	G	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	G	28206650	A	G	28206650	2	3	427	1	0	0	0	0	0	0	0	1	17893	156	6	3		3	ZNF395	8	28206650	Silent	SNP	A	TCGA-BP-5196-01A-01D-1429-08		28206650	118157372	25	24643											
RRS1	23212	hgsc.bcm.edu;ucsc.edu	37	8	67342008	67342009	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	67342009	-	A	67342008	7	5	427	1	0	1	1	0	0	0	0	0	13705	1635	57	0	644	0	RRS1	8	67342008	Frame_Shift_Ins	INS	-	TCGA-BP-5196-01A-01D-1429-08	39135358	67342008	79022014	26	24644											
ZFHX4	79776	broad.mit.edu	37	8	77776069	77776069	+	Silent	SNP	T	C	C	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	C	77776069	C	C	77776069	2	2	427	1	0	0	0	0	0	0	0	1	17647	1509	53	3		3	ZFHX4	8	77776069	Silent	SNP	T	TCGA-BP-5196-01A-01D-1429-08	10434061	77776069	68587953	27	24645											
HEY1	23462	broad.mit.edu;hgsc.bcm.edu	37	8	80678002	80678002	+	Silent	SNP	G	G	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	80678002	G	A	80678002	2	1	427	1	0	0	0	0	0	0	0	1	7085	1024	36	2		2	HEY1	8	80678002	Silent	SNP	G	TCGA-BP-5196-01A-01D-1429-08	2901933	80678002	65686020	28	24646											
SGPL1	8879	broad.mit.edu;hgsc.bcm.edu	37	10	72617449	72617449	+	Splice_Site	SNP	T	T	C	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	C	72617449	T	C	72617449	5	2	427	1	0	0	0	0	0	0	1	0	14231	1710	59	3	506	3	SGPL1	10	72617449	Splice_Site	SNP	T	TCGA-BP-5196-01A-01D-1429-08		72617449	62917298	29	24647											
MMS19	64210	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99223688	99223688	+	Silent	SNP	A	A	G	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	G	99223688	A	G	99223688	2	3	427	1	0	0	0	0	0	0	0	1	9679	175	7	3		3	MMS19	10	99223688	Silent	SNP	A	TCGA-BP-5196-01A-01D-1429-08	26606239	99223688	36311059	30	24648											
PI4K2A	55361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99400914	99400914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	G	99400914	T	G	99400914	3	3	427	1	0	0	0	0	1	0	0	0	11878	1609	56	5	417	5	PI4K2A	10	99400914	Missense_Mutation	SNP	T	TCGA-BP-5196-01A-01D-1429-08	177226	99400914	36133833	31	24649											
C10orf81	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	115534737	115534737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	115534737	C	A	115534737	3	1	427	1	0	0	0	0	1	0	0	0	1621	478	17	4	966	4	C10orf81	10	115534737	Missense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08	16133823	115534737	20000010	32	24650											
MKI67	4288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	129913557	129913557	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	G	129913557	C	G	129913557	3	3	427	1	0	0	0	0	1	0	0	0	9605	913	32	4	8691	4	MKI67	10	129913557	Missense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08	14378820	129913557	5621190	33	24651											
IRF7	3665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	614301	614301	+	Silent	SNP	G	G	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	614301	G	A	614301	2	1	427	1	0	0	0	0	0	0	0	1	7842	1161	41	2		2	IRF7	11	614301	Silent	SNP	G	TCGA-BP-5196-01A-01D-1429-08		614301	134392215	34	24652											
OR4C16	219428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55339950	55339950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	55339950	C	T	55339950	3	4	427	1	0	0	0	0	1	0	0	0	11056	536	19	1	349	1	OR4C16	11	55339950	Missense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08	54725649	55339950	79666566	35	24653											
SYTL2	54843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	85409119	85409119	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	85409119	T	A	85409119	4	1	427	1	0	0	0	0	0	1	0	0	15495	1763	61	5	460	5	SYTL2	11	85409119	Nonsense_Mutation	SNP	T	TCGA-BP-5196-01A-01D-1429-08	30069169	85409119	49597397	36	24654											
B3GAT1	27087	broad.mit.edu	37	11	134253723	134253723	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	134253723	T	T	134253723	3	4	427	1	0	0	0	0	1	0	0	0	1253	768	27	1	544	1	B3GAT1	11	134253723	Missense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08	48844604	134253723	752793	37	24655											
C12orf40	283461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	40114940	40114940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	40114940	C	A	40114940	3	1	427	1	0	0	0	0	1	0	0	0	1688	912	32	4	1896	4	C12orf40	12	40114940	Missense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08		40114940	93736955	38	24656											
LRRIQ1	84125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	85438507	85438507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	85438507	G	A	85438507	3	1	427	1	0	0	0	0	1	0	0	0	9036	1349	47	2	266	2	LRRIQ1	12	85438507	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08	45323567	85438507	48413388	39	24657											
POC1B	282809	hgsc.bcm.edu;ucsc.edu	37	12	89865497	89865498	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	89865498	-	T	89865497	7	5	427	1	0	1	1	0	0	0	0	0	12183	98	4	0	894	0	POC1B	12	89865497	Frame_Shift_Ins	INS	-	TCGA-BP-5196-01A-01D-1429-08	4426990	89865497	43986398	40	24658											
IFT81	28981	hgsc.bcm.edu;ucsc.edu	37	12	110628765	110628766	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	-	110628766	AC	-	110628765	7	5	427	1	0	1	0	1	0	0	0	0	7572	391	14	0	1537	0	IFT81	12	110628765	Frame_Shift_Del	DEL	AC	TCGA-BP-5196-01A-01D-1429-08	20763268	110628765	23223130	41	24659											
PGAM5	192111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133295376	133295376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	G	133295376	T	G	133295376	3	3	427	1	0	0	0	0	1	0	0	0	11783	1841	64	5	770	5	PGAM5	12	133295376	Missense_Mutation	SNP	T	TCGA-BP-5196-01A-01D-1429-08	22666611	133295376	556519	42	24660											
FAM123A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25744209	25744209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	25744209	C	T	25744209	3	4	427	1	0	0	0	0	1	0	0	0	5426	536	19	1	470	1	FAM123A	13	25744209	Missense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08		25744209	89425669	43	24661											
KBTBD6	89890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	41706394	41706394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	C	41706394	T	C	41706394	3	2	427	1	0	0	0	0	1	0	0	0	8004	1725	60	3	1774	3	KBTBD6	13	41706394	Missense_Mutation	SNP	T	TCGA-BP-5196-01A-01D-1429-08	15962185	41706394	73463484	44	24662											
OLFM4	10562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	53624774	53624774	+	Silent	SNP	A	A	G	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	G	53624774	A	G	53624774	2	3	427	1	0	0	0	0	0	0	0	1	10862	407	15	3		3	OLFM4	13	53624774	Silent	SNP	A	TCGA-BP-5196-01A-01D-1429-08	11918380	53624774	61545104	45	24663											
CATSPERB	79820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	92054360	92054360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	92054360	C	A	92054360	3	1	427	1	0	0	0	0	1	0	0	0	2693	710	25	4	343	4	CATSPERB	14	92054360	Missense_Mutation	SNP	C	TCGA-BP-5196-01A-01D-1429-08		92054360	15295180	46	24664											
SCAPER	49855	broad.mit.edu;hgsc.bcm.edu	37	15	76994175	76994175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	G	76994175	A	G	76994175	3	3	427	1	0	0	0	0	1	0	0	0	13891	43	2	3	1822	3	SCAPER	15	76994175	Missense_Mutation	SNP	A	TCGA-BP-5196-01A-01D-1429-08		76994175	25537217	47	24665											
DOK4	55715	broad.mit.edu;hgsc.bcm.edu	37	16	57509863	57509863	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	C	57509863	G	C	57509863	3	2	427	1	0	0	0	0	1	0	0	0	4701	1115	39	4	935	4	DOK4	16	57509863	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08		57509863	32844890	48	24666											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11738174	11738174	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	C	11738174	G	C	11738174	3	2	427	1	0	0	0	0	1	0	0	0	4610	971	34	4	9660	4	DNAH9	17	11738174	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08		11738174	69457036	49	24667											
RIOK3	8780	broad.mit.edu;hgsc.bcm.edu	37	18	21056977	21056977	+	Missense_Mutation	SNP	G	G	A	rs111330062	bycluster;byfrequency	TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	21056977	G	A	21056977	3	1	427	1	0	0	0	0	1	0	0	0	13392	1116	39	1	1219	1	RIOK3	18	21056977	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08		21056977	57020271	50	24668											
ATCAY	85300	broad.mit.edu;hgsc.bcm.edu	37	19	3907733	3907733	+	Silent	SNP	C	C	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	3907733	C	T	3907733	2	4	427	1	0	0	0	0	0	0	0	1	1077	550	19	1		1	ATCAY	19	3907733	Silent	SNP	C	TCGA-BP-5196-01A-01D-1429-08		3907733	55221250	51	24669											
ZNF155	7711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44501334	44501334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	G	44501334	A	G	44501334	3	3	427	1	0	0	0	0	1	0	0	0	17748	101	4	3	1339	3	ZNF155	19	44501334	Missense_Mutation	SNP	A	TCGA-BP-5196-01A-01D-1429-08	40593601	44501334	14627649	52	24670											
ZNF814	730051	broad.mit.edu	37	19	58385927	58385927	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	-	58385927	-	-	58385927	7	5	427	1	0	1	0	1	0	0	0	0	18188	987	35	0	1740	0	ZNF814	19	58385927	Frame_Shift_Del	DEL	G	TCGA-BP-5196-01A-01D-1429-08	13884593	58385927	743056	53	24671											
PRPF6	24148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62642793	62642793	+	Silent	SNP	C	C	T	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	T	62642793	C	T	62642793	2	4	427	1	0	0	0	0	0	0	0	1	12584	874	31	1		1	PRPF6	20	62642793	Silent	SNP	C	TCGA-BP-5196-01A-01D-1429-08		62642793	382727	54	24672											
MCART6	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	103349894	103349894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5196-01A-01D-1429-08	TCGA-BP-5196-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	201bf07d-0be9-442f-ad66-15ea8c7e812d	73a10535-7e80-40b3-933a-7b8e95794681	A	103349894	G	A	103349894	3	1	427	1	0	0	0	0	1	0	0	0	9378	1145	40	1	880	1	MCART6	23	103349894	Missense_Mutation	SNP	G	TCGA-BP-5196-01A-01D-1429-08		103349894	51920666	55	24673											
CNR2	1269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24201824	24201824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	24201824	T	A	24201824	3	1	428	1	0	0	0	0	1	0	0	0	3634	1464	51	5	802	5	CNR2	1	24201824	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08		24201824	225048797	1	24674											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39908131	39908131	+	Silent	SNP	C	C	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	39908131	C	A	39908131	2	1	428	1	0	0	0	0	0	0	0	1	9151	668	24	4		4	MACF1	1	39908131	Silent	SNP	C	TCGA-BP-5198-01A-01D-1429-08	15706307	39908131	209342490	2	24675											
HSPA6	3310	hgsc.bcm.edu	37	1	161495527	161495527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	161495527	A	T	161495527	3	4	428	1	0	0	0	0	1	0	0	0	7422	304	11	5	1081	5	HSPA6	1	161495527	Missense_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08	121587396	161495527	87755094	3	24676											
LAMC2	3918	broad.mit.edu;hgsc.bcm.edu	37	1	183195848	183195848	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	183195848	A	C	183195848	3	2	428	1	0	0	0	0	1	0	0	0	8622	275	10	5	1116	5	LAMC2	1	183195848	Missense_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08	21700321	183195848	66054773	4	24677											
WDR64	128025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	241886621	241886621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	241886621	G	T	241886621	3	4	428	1	0	0	0	0	1	0	0	0	17327	1368	48	4	1081	4	WDR64	1	241886621	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08	58690773	241886621	7364000	5	24678											
LRPPRC	10128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44145201	44145201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	44145201	T	A	44145201	3	1	428	1	0	0	0	0	1	0	0	0	8972	1606	56	5	1113	5	LRPPRC	2	44145201	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08		44145201	199054172	6	24679											
NPHP1	4867	broad.mit.edu;hgsc.bcm.edu	37	2	110926096	110926096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	110926096	G	T	110926096	3	4	428	1	0	0	0	0	1	0	0	0	10586	1000	35	4	1704	4	NPHP1	2	110926096	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08	66780895	110926096	132273277	7	24680											
ARHGAP15	55843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	143913197	143913197	+	Silent	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	143913197	C	T	143913197	2	4	428	1	0	0	0	0	0	0	0	1	866	813	29	2		2	ARHGAP15	2	143913197	Silent	SNP	C	TCGA-BP-5198-01A-01D-1429-08	32987101	143913197	99286176	8	24681											
KCNJ3	3760	broad.mit.edu	37	2	155555946	155555946	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	155555946	C	C	155555946	3	2	428	1	0	0	0	0	1	0	0	0	8059	43	2	5	661	5	KCNJ3	2	155555946	Missense_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08	11642749	155555946	87643427	9	24682											
XIRP2	129446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	168099752	168099752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	168099752	C	A	168099752	3	1	428	1	0	0	0	0	1	0	0	0	17442	507	18	4	1880	4	XIRP2	2	168099752	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	12543806	168099752	75099621	10	24683											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179634604	179634604	+	Nonsense_Mutation	SNP	C	C	A	rs143767300	alternate_allele	TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	179634604	C	A	179634604	4	1	428	1	0	0	0	0	0	1	0	0	16747	835	29	4	102588	4	TTN	2	179634604	Nonsense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	11534852	179634604	63564769	11	24684											
BMPR2	659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	203407042	203407042	+	Missense_Mutation	SNP	G	G	T	rs146957466	alternate_allele	TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	203407042	G	T	203407042	3	4	428	1	0	0	0	0	1	0	0	0	1471	1145	40	4	1323	4	BMPR2	2	203407042	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08	23772438	203407042	39792331	12	24685											
GRM7	2917	broad.mit.edu;ucsc.edu	37	3	6903262	6903262	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	6903262	C	C	6903262	3	2	428	1	0	0	0	0	1	0	0	0	6809	188	7	5	189	5	GRM7	3	6903262	Missense_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08		6903262	191119168	13	24686											
MTMR14	64419	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9724925	9724925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	9724925	G	A	9724925	3	1	428	1	0	0	0	0	1	0	0	0	9949	1290	45	2	999	2	MTMR14	3	9724925	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08	2821663	9724925	188297505	14	24687											
VHL	7428	hgsc.bcm.edu	37	3	10191489	10191492	+	Frame_Shift_Del	DEL	GATG	GATG	-	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	GATG	GATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	-	10191492	GATG	-	10191489	7	5	428	1	0	1	0	1	0	0	0	0	17174	1058	37	0	492	0	VHL	3	10191489	Frame_Shift_Del	DEL	GATG	TCGA-BP-5198-01A-01D-1429-08	466564	10191489	187830941	15	24688											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47084168	47084175	+	Frame_Shift_Del	DEL	TTATTTGT	TTATTTGT	-	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	TTATTTGT	TTATTTGT	TTATTTGT	-	TTATTTGT	TTATTTGT	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	-	47084175	TTATTTGT	-	47084168	7	5	428	1	0	1	0	1	0	0	0	0	14144	1493	52	0	593	0	SETD2	3	47084168	Frame_Shift_Del	DEL	TTATTTGT	TCGA-BP-5198-01A-01D-1429-08	36892679	47084168	150938262	16	24689											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52623121	52623122	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	AT	AT	AT	-	AT	AT	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	-	52623122	AT	-	52623121	7	5	428	1	0	1	0	1	0	0	0	0	11498	333	12	0	2022	0	PBRM1	3	52623121	Frame_Shift_Del	DEL	AT	TCGA-BP-5198-01A-01D-1429-08	5538953	52623121	145399309	17	24690											
PVRL3	25945	broad.mit.edu	37	3	110837556	110837556	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	110837556	T	T	110837556	3	4	428	1	0	0	0	0	1	0	0	0	12854	14	1	5	566	5	PVRL3	3	110837556	Missense_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08	58214435	110837556	87184874	18	24691											
PLOD2	5352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	145788846	145788846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	145788846	C	T	145788846	3	4	428	1	0	0	0	0	1	0	0	0	12109	536	19	1	180	1	PLOD2	3	145788846	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	34951290	145788846	52233584	19	24692											
MYO10	4651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	16701663	16701663	+	Silent	SNP	G	G	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	16701663	G	A	16701663	2	1	428	1	0	0	0	0	0	0	0	1	10069	1049	37	1		1	MYO10	5	16701663	Silent	SNP	G	TCGA-BP-5198-01A-01D-1429-08		16701663	164213597	20	24693											
WDR36	134430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	110434508	110434508	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	G	110434508	T	G	110434508	3	3	428	1	0	0	0	0	1	0	0	0	17302	1493	52	5	562	5	WDR36	5	110434508	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08	93732845	110434508	70480752	21	24694											
PCDHA12	56137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140256882	140256882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	140256882	T	C	140256882	3	2	428	1	0	0	0	0	1	0	0	0	11529	1522	53	3	1827	3	PCDHA12	5	140256882	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08	29822374	140256882	40658378	22	24695											
DIAPH1	1729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140954549	140954549	+	Silent	SNP	G	G	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	140954549	G	T	140954549	2	4	428	1	0	0	0	0	0	0	0	1	4520	1219	43	4		4	DIAPH1	5	140954549	Silent	SNP	G	TCGA-BP-5198-01A-01D-1429-08	697667	140954549	39960711	23	24696											
ADAM19	8728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	156923994	156923994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	156923994	A	T	156923994	3	4	428	1	0	0	0	0	1	0	0	0	240	217	8	5	1294	5	ADAM19	5	156923994	Missense_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08	15969445	156923994	23991266	24	24697											
MGAT4B	11282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179225513	179225513	+	Silent	SNP	G	G	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	179225513	G	A	179225513	2	1	428	1	0	0	0	0	0	0	0	1	9553	1159	40	1		1	MGAT4B	5	179225513	Silent	SNP	G	TCGA-BP-5198-01A-01D-1429-08	22301519	179225513	1689747	25	24698											
FANCE	2178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35423912	35423912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	35423912	G	A	35423912	3	1	428	1	0	0	0	0	1	0	0	0	5673	1232	43	2	643	2	FANCE	6	35423912	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08		35423912	135691155	26	24699											
CD109	135228	broad.mit.edu;ucsc.edu	37	6	74516670	74516670	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	74516670	C	C	74516670	3	2	428	1	0	0	0	0	1	0	0	0	2965	247	9	5	3162	5	CD109	6	74516670	Missense_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08	39092758	74516670	96598397	27	24700											
HIBADH	11112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	27570888	27570888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	27570888	G	T	27570888	3	4	428	1	0	0	0	0	1	0	0	0	7106	1174	41	4	243	4	HIBADH	7	27570888	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08		27570888	131567775	28	24701											
POM121	9883	broad.mit.edu;hgsc.bcm.edu	37	7	72398925	72398925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	72398925	G	A	72398925	3	1	428	1	0	0	0	0	1	0	0	0	12246	1087	38	1	240	1	POM121	7	72398925	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08	44828037	72398925	86739738	29	24702											
EMID2	136227	broad.mit.edu	37	7	101006350	101006350	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	G	101006350	G	G	101006350	3	3	428	1	0	0	0	0	1	0	0	0	5094	1580	55	5	39	5	EMID2	7	101006350	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08	28607425	101006350	58132313	30	24703											
KIAA1147	57189	broad.mit.edu	37	7	141364002	141364002	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	141364002	C	C	141364002	3	2	428	1	0	0	0	0	1	0	0	0	8217	1638	57	3	233	3	KIAA1147	7	141364002	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08	40357652	141364002	17774661	31	24704											
MTMR9	66036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	11142463	11142463	+	Silent	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	11142463	C	T	11142463	2	4	428	1	0	0	0	0	0	0	0	1	9957	518	18	2		2	MTMR9	8	11142463	Silent	SNP	C	TCGA-BP-5198-01A-01D-1429-08		11142463	135221559	32	24705											
LRP12	29967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	105507335	105507335	+	Silent	SNP	A	A	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	105507335	A	T	105507335	2	4	428	1	0	0	0	0	0	0	0	1	8961	117	5	5		5	LRP12	8	105507335	Silent	SNP	A	TCGA-BP-5198-01A-01D-1429-08	94364872	105507335	40856687	33	24706											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113323219	113323219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	113323219	G	A	113323219	3	1	428	1	0	0	0	0	1	0	0	0	3948	1232	43	2	3338	2	CSMD3	8	113323219	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08	7815884	113323219	33040803	34	24707											
TAF2	6873	hgsc.bcm.edu;ucsc.edu	37	8	120744220	120744221	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	120744221	-	A	120744220	7	5	428	1	0	1	1	0	0	0	0	0	15536	1696	59	0	59	0	TAF2	8	120744220	Frame_Shift_Ins	INS	-	TCGA-BP-5198-01A-01D-1429-08	7421001	120744220	25619802	35	24708											
CORO2A	7464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	100899899	100899899	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	100899899	G	C	100899899	3	2	428	1	0	0	0	0	1	0	0	0	3758	1252	44	4	1344	4	CORO2A	9	100899899	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08		100899899	40313532	36	24709											
PIP5KL1	138429	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130687392	130687392	+	Missense_Mutation	SNP	G	G	C	rs149767177	byfrequency;alternate_allele	TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	130687392	G	C	130687392	3	2	428	1	0	0	0	0	1	0	0	0	11949	1145	40	4	281	4	PIP5KL1	9	130687392	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08	29787493	130687392	10526039	37	24710											
CDH23	64072	broad.mit.edu	37	10	73499530	73499530	+	Splice_Site	SNP	G	T	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	73499530	T	T	73499530	5	4	428	1	0	0	0	0	0	0	1	0	3110	1275	44	4	4972	4	CDH23	10	73499530	Splice_Site	SNP	G	TCGA-BP-5198-01A-01D-1429-08		73499530	62035217	38	24711											
DPYSL4	10570	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	134012456	134012456	+	Silent	SNP	C	C	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	134012456	C	A	134012456	2	1	428	1	0	0	0	0	0	0	0	1	4751	874	31	4		4	DPYSL4	10	134012456	Silent	SNP	C	TCGA-BP-5198-01A-01D-1429-08	60512926	134012456	1522291	39	24712											
C11orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	33565157	33565157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	33565157	C	A	33565157	3	1	428	1	0	0	0	0	1	0	0	0	1642	478	17	4	1159	4	C11orf41	11	33565157	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08		33565157	101441359	40	24713											
RSF1	51773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	77412360	77412360	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	77412360	A	T	77412360	4	4	428	1	0	0	0	0	0	1	0	0	13712	157	6	5	2455	5	RSF1	11	77412360	Nonsense_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08	43847203	77412360	57594156	41	24714											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92531032	92531032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	92531032	C	T	92531032	3	4	428	1	0	0	0	0	1	0	0	0	5698	652	23	1	4887	1	FAT3	11	92531032	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	15118672	92531032	42475484	42	24715											
PKP2	5318	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32976979	32976979	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	G	32976979	C	G	32976979	3	3	428	1	0	0	0	0	1	0	0	0	11992	695	24	4	867	4	PKP2	12	32976979	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08		32976979	100874916	43	24716											
FKBP11	51303	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49315838	49315838	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	49315838	T	A	49315838	4	1	428	1	0	0	0	0	0	1	0	0	5910	1850	64	5	74	5	FKBP11	12	49315838	Nonsense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08	16338859	49315838	84536057	44	24717											
LRIG3	121227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	59268041	59268041	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	-	59268041	A	-	59268041	7	5	428	1	0	1	0	1	0	0	0	0	8953	420	15	0	456	0	LRIG3	12	59268041	Frame_Shift_Del	DEL	A	TCGA-BP-5198-01A-01D-1429-08	9952203	59268041	74583854	45	24718											
YEATS4	8089	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	69764550	69764550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	G	69764550	C	G	69764550	3	3	428	1	0	0	0	0	1	0	0	0	17485	478	17	4	416	4	YEATS4	12	69764550	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	10496509	69764550	64087345	46	24719											
CCDC41	51134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	94772632	94772632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	94772632	C	T	94772632	3	4	428	1	0	0	0	0	1	0	0	0	2815	864	30	2	1413	2	CCDC41	12	94772632	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	25008082	94772632	39079263	47	24720											
P2RX2	22953	hgsc.bcm.edu;ucsc.edu	37	12	133198066	133198067	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	133198067	-	A	133198066	7	5	428	1	0	1	1	0	0	0	0	0	11347	1161	41	0	1040	0	P2RX2	12	133198066	Frame_Shift_Ins	INS	-	TCGA-BP-5198-01A-01D-1429-08	38425434	133198066	653829	48	24721											
ATP12A	479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25284712	25284712	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	25284712	T	A	25284712	3	1	428	1	0	0	0	0	1	0	0	0	1122	1609	56	5	2974	5	ATP12A	13	25284712	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08		25284712	89885166	49	24722											
OR4Q3	441669	broad.mit.edu;hgsc.bcm.edu	37	14	20216035	20216035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	20216035	G	T	20216035	3	4	428	1	0	0	0	0	1	0	0	0	11088	1357	47	4	451	4	OR4Q3	14	20216035	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08		20216035	87133505	50	24723											
PCNX	22990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	71462626	71462626	+	Silent	SNP	T	T	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	71462626	T	C	71462626	2	2	428	1	0	0	0	0	0	0	0	1	11598	1722	60	3		3	PCNX	14	71462626	Silent	SNP	T	TCGA-BP-5198-01A-01D-1429-08	51246591	71462626	35886914	51	24724											
SLC24A4	123041	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	92958092	92958092	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	92958092	C	T	92958092	4	4	428	1	0	0	0	0	0	1	0	0	14481	711	25	2	1628	2	SLC24A4	14	92958092	Nonsense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	21495466	92958092	14391448	52	24725											
RPAP1	26015	hgsc.bcm.edu;ucsc.edu	37	15	41819689	41819689	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	-	41819689	C	-	41819689	7	5	428	1	0	1	0	1	0	0	0	0	13554	797	28	0	2694	0	RPAP1	15	41819689	Frame_Shift_Del	DEL	C	TCGA-BP-5198-01A-01D-1429-08		41819689	60711703	53	24726											
FBN1	2200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	48782117	48782117	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	48782117	C	A	48782117	4	1	428	1	0	0	0	0	0	1	0	0	5709	893	31	4	5770	4	FBN1	15	48782117	Nonsense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	6962428	48782117	53749275	54	24727											
HERC1	8925	hgsc.bcm.edu;ucsc.edu	37	15	63955309	63955310	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	TT	63955310	-	TT	63955309	7	5	428	1	0	1	1	0	0	0	0	0	7064	98	4	0	5950	0	HERC1	15	63955309	Frame_Shift_Ins	INS	-	TCGA-BP-5198-01A-01D-1429-08	15173192	63955309	38576083	55	24728											
ZSCAN2	54993	broad.mit.edu	37	15	85147434	85147434	+	Silent	SNP	A	T	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	85147434	T	T	85147434	2	4	428	1	0	0	0	0	0	0	0	1	18243	378	14	5		5	ZSCAN2	15	85147434	Silent	SNP	A	TCGA-BP-5198-01A-01D-1429-08	21192125	85147434	17383958	56	24729											
GTF3C1	2975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	27523128	27523128	+	Silent	SNP	T	T	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	27523128	T	C	27523128	2	2	428	1	0	0	0	0	0	0	0	1	6879	1567	55	3		3	GTF3C1	16	27523128	Silent	SNP	T	TCGA-BP-5198-01A-01D-1429-08		27523128	62831625	57	24730											
ZNF267	10308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31927436	31927436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	G	31927436	T	G	31927436	3	3	428	1	0	0	0	0	1	0	0	0	17818	1432	50	5	1880	5	ZNF267	16	31927436	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08	4404308	31927436	58427317	58	24731											
DUS2L	54920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68109279	68109279	+	Silent	SNP	C	C	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	68109279	C	A	68109279	2	1	428	1	0	0	0	0	0	0	0	1	4808	668	24	4		4	DUS2L	16	68109279	Silent	SNP	C	TCGA-BP-5198-01A-01D-1429-08	36181843	68109279	22245474	59	24732											
ANKRD11	29123	hgsc.bcm.edu;ucsc.edu	37	16	89350692	89350692	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	-	89350692	G	-	89350692	7	5	428	1	0	1	0	1	0	0	0	0	639	1116	39	0	5753	0	ANKRD11	16	89350692	Frame_Shift_Del	DEL	G	TCGA-BP-5198-01A-01D-1429-08	21241413	89350692	1004061	60	24733											
USP22	23326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	20911265	20911265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	20911265	C	T	20911265	3	4	428	1	0	0	0	0	1	0	0	0	17066	710	25	2	449	2	USP22	17	20911265	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08		20911265	60283945	61	24734											
TMEM132E	124842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	32954049	32954049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	32954049	G	A	32954049	3	1	428	1	0	0	0	0	1	0	0	0	16060	971	34	2	711	2	TMEM132E	17	32954049	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08	12042784	32954049	48241161	62	24735											
WIPF2	147179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38420931	38420931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	38420931	C	T	38420931	3	4	428	1	0	0	0	0	1	0	0	0	17380	536	19	1	517	1	WIPF2	17	38420931	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	5466882	38420931	42774279	63	24736											
SLC4A1	6521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42333125	42333125	+	Silent	SNP	G	G	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	42333125	G	A	42333125	2	1	428	1	0	0	0	0	0	0	0	1	14663	1161	41	2		2	SLC4A1	17	42333125	Silent	SNP	G	TCGA-BP-5198-01A-01D-1429-08	3912194	42333125	38862085	64	24737											
POLG2	11232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62479086	62479086	+	Missense_Mutation	SNP	T	T	C	rs146731596		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	62479086	T	C	62479086	3	2	428	1	0	0	0	0	1	0	0	0	12208	1406	49	3	328	3	POLG2	17	62479086	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08	20145961	62479086	18716124	65	24738											
NOL11	25926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	65718733	65718733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	G	65718733	T	G	65718733	3	3	428	1	0	0	0	0	1	0	0	0	10528	1838	64	5	517	5	NOL11	17	65718733	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08	3239647	65718733	15476477	66	24739											
DOT1L	84444	broad.mit.edu;ucsc.edu	37	19	2229790	2229790	+	Nonstop_Mutation	SNP	A	C	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	2229790	C	C	2229790	4	2	428	1	0	0	0	0	0	0	0	0	4711	433	15	5	4723	5	DOT1L	19	2229790	Nonstop_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08		2229790	56899193	67	24740											
CPAMD8	27151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17003921	17003921	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	17003921	A	C	17003921	3	2	428	1	0	0	0	0	1	0	0	0	3797	462	16	5	5	5	CPAMD8	19	17003921	Missense_Mutation	SNP	A	TCGA-BP-5198-01A-01D-1429-08	14774131	17003921	42125062	68	24741											
RTN2	6253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45997672	45997672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	45997672	T	C	45997672	3	2	428	1	0	0	0	0	1	0	0	0	13739	1667	58	3	1103	3	RTN2	19	45997672	Missense_Mutation	SNP	T	TCGA-BP-5198-01A-01D-1429-08	28993751	45997672	13131311	69	24742											
ZNF841	284371	broad.mit.edu	37	19	52570738	52570738	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	A	52570738	A	A	52570738	4	1	428	1	0	0	0	0	0	1	0	0	18201	864	30	4	2381	4	ZNF841	19	52570738	Nonsense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	6573066	52570738	6558245	70	24743											
ZNF616	90317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52618234	52618234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	52618234	C	T	52618234	3	4	428	1	0	0	0	0	1	0	0	0	18053	652	23	1	166	1	ZNF616	19	52618234	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	47496	52618234	6510749	71	24744											
PEG3	5178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57325778	57325778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	57325778	G	C	57325778	3	2	428	1	0	0	0	0	1	0	0	0	11727	1310	46	4	738	4	PEG3	19	57325778	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08	4707544	57325778	1803205	72	24745											
ZNFX1	57169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47887879	47887879	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	C	47887879	G	C	47887879	3	2	428	1	0	0	0	0	1	0	0	0	18217	1000	35	4	5334	4	ZNFX1	20	47887879	Missense_Mutation	SNP	G	TCGA-BP-5198-01A-01D-1429-08		47887879	15137641	73	24746											
C20orf106	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	55101052	55101052	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	55101052	C	T	55101052	4	4	428	1	0	0	0	0	0	1	0	0	2078	876	31	1	448	1	C20orf106	20	55101052	Nonsense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	7213173	55101052	7924468	74	24747											
PI4KA	5297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21075676	21075676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	T	21075676	C	T	21075676	3	4	428	1	0	0	0	0	1	0	0	0	11880	739	26	2	1334	2	PI4KA	22	21075676	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08		21075676	30228890	75	24748											
TMPRSS6	164656	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	37462221	37462221	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5198-01A-01D-1429-08	TCGA-BP-5198-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ac66d658-97d4-416b-8028-0077a1c8a01d	7c55a5d6-c39b-465f-9ff9-bdb754beea82	G	37462221	C	G	37462221	3	3	428	1	0	0	0	0	1	0	0	0	16263	623	22	4	104	4	TMPRSS6	22	37462221	Missense_Mutation	SNP	C	TCGA-BP-5198-01A-01D-1429-08	16386545	37462221	13842345	76	24749											
CLCN6	1185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11876723	11876723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	11876723	G	A	11876723	3	1	429	1	0	0	0	0	1	0	0	0	3469	1029	36	2	279	2	CLCN6	1	11876723	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08		11876723	237373898	1	24750	310	2									
CLCN6	1185	broad.mit.edu;hgsc.bcm.edu	37	1	11876724	11876724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	11876724	T	C	11876724	3	2	429	1	0	0	0	0	1	0	0	0	3469	1667	58	3	280	3	CLCN6	1	11876724	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	1	11876724	237373897	2	24751	310	2									
ARID1A	8289	hgsc.bcm.edu	37	1	27106455	27106455	+	Silent	SNP	A	A	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	27106455	A	C	27106455	2	2	429	1	0	0	0	0	0	0	0	1	913	175	7	5		5	ARID1A	1	27106455	Silent	SNP	A	TCGA-BP-5199-01A-01D-1429-08	15229731	27106455	222144166	3	24752	311	2									
ARID1A	8289	hgsc.bcm.edu;ucsc.edu	37	1	27106460	27106460	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	-	27106460	G	-	27106460	7	5	429	1	0	1	0	1	0	0	0	0	913	1116	39	0	6149	0	ARID1A	1	27106460	Frame_Shift_Del	DEL	G	TCGA-BP-5199-01A-01D-1429-08	5	27106460	222144161	4	24753	311	2									
MAP3K6	9064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	27690800	27690800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	27690800	C	A	27690800	3	1	429	1	0	0	0	0	1	0	0	0	9261	739	26	4	3380	4	MAP3K6	1	27690800	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	584340	27690800	221559821	5	24754											
DNAJB4	11080	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78481811	78481811	+	Silent	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	78481811	G	A	78481811	2	1	429	1	0	0	0	0	0	0	0	1	4624	1306	46	2		2	DNAJB4	1	78481811	Silent	SNP	G	TCGA-BP-5199-01A-01D-1429-08	50791011	78481811	170768810	6	24755											
ZNF687	57592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151263418	151263418	+	Silent	SNP	C	C	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	151263418	C	A	151263418	2	1	429	1	0	0	0	0	0	0	0	1	18104	610	22	4		4	ZNF687	1	151263418	Silent	SNP	C	TCGA-BP-5199-01A-01D-1429-08	72781607	151263418	97987203	7	24756											
KLHL20	27252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	173703125	173703125	+	Silent	SNP	A	A	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	173703125	A	T	173703125	2	4	429	1	0	0	0	0	0	0	0	1	8382	291	11	5		5	KLHL20	1	173703125	Silent	SNP	A	TCGA-BP-5199-01A-01D-1429-08	22439707	173703125	75547496	8	24757											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186113746	186113746	+	Missense_Mutation	SNP	G	G	T	rs149329415	alternate_allele	TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	186113746	G	T	186113746	3	4	429	1	0	0	0	0	1	0	0	0	7227	1203	42	4	14539	4	HMCN1	1	186113746	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	12410621	186113746	63136875	9	24758											
ASPM	259266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197091068	197091068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	197091068	T	C	197091068	3	2	429	1	0	0	0	0	1	0	0	0	1056	1850	64	3	6638	3	ASPM	1	197091068	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	10977322	197091068	52159553	10	24759	312	2									
ASPM	259266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197091070	197091070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	197091070	A	G	197091070	3	3	429	1	0	0	0	0	1	0	0	0	1056	420	15	3	6640	3	ASPM	1	197091070	Missense_Mutation	SNP	A	TCGA-BP-5199-01A-01D-1429-08	2	197091070	52159551	11	24760	312	2									
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201029896	201029896	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	201029896	T	G	201029896	3	3	429	1	0	0	0	0	1	0	0	0	2549	1464	51	5	2393	5	CACNA1S	1	201029896	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	3938826	201029896	48220725	12	24761											
PQLC3	130814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11312070	11312070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	11312070	G	A	11312070	3	1	429	1	0	0	0	0	1	0	0	0	12430	971	34	2	392	2	PQLC3	2	11312070	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08		11312070	231887303	13	24762											
ZNF513	130557	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27601531	27601531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	27601531	G	A	27601531	3	1	429	1	0	0	0	0	1	0	0	0	17970	1029	36	2	1031	2	ZNF513	2	27601531	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	16289461	27601531	215597842	14	24763											
VWA3B	200403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	98914472	98914472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	98914472	C	A	98914472	3	1	429	1	0	0	0	0	1	0	0	0	17253	739	26	4	3350	4	VWA3B	2	98914472	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	71312941	98914472	144284901	15	24764											
MGAT5	4249	broad.mit.edu;hgsc.bcm.edu	37	2	135076310	135076310	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	135076310	G	C	135076310	3	2	429	1	0	0	0	0	1	0	0	0	9555	1014	35	4	587	4	MGAT5	2	135076310	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	36161838	135076310	108123063	16	24765											
VHL	7428	hgsc.bcm.edu	37	3	10183840	10183844	+	Frame_Shift_Del	DEL	TGGCA	TGGCA	-	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	TGGCA	TGGCA	TGGCA	-	TGGCA	TGGCA	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	-	10183844	TGGCA	-	10183840	7	5	429	1	0	1	0	1	0	0	0	0	17174	1567	55	0	311	0	VHL	3	10183840	Frame_Shift_Del	DEL	TGGCA	TCGA-BP-5199-01A-01D-1429-08		10183840	187838590	17	24766											
C4orf21	55345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	113510905	113510905	+	Silent	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	113510905	A	G	113510905	2	3	429	1	0	0	0	0	0	0	0	1	2256	214	8	3		3	C4orf21	4	113510905	Silent	SNP	A	TCGA-BP-5199-01A-01D-1429-08		113510905	77643371	18	24767											
C4orf21	55345	hgsc.bcm.edu;ucsc.edu	37	4	113540563	113540564	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	113540564	-	A	113540563	7	5	429	1	0	1	1	0	0	0	0	0	2256	1406	49	0	5771	0	C4orf21	4	113540563	Frame_Shift_Ins	INS	-	TCGA-BP-5199-01A-01D-1429-08	29658	113540563	77613713	19	24768											
TRIP13	9319	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	916051	916051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	916051	G	C	916051	3	2	429	1	0	0	0	0	1	0	0	0	16569	942	33	4	1216	4	TRIP13	5	916051	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08		916051	179999209	20	24769											
RASA1	5921	hgsc.bcm.edu;ucsc.edu	37	5	86627234	86627238	+	Frame_Shift_Del	DEL	TTATC	TTATC	-	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	TTATC	TTATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	-	86627238	TTATC	-	86627234	7	5	429	1	0	1	0	1	0	0	0	0	13073	1722	60	0	627	0	RASA1	5	86627234	Frame_Shift_Del	DEL	TTATC	TCGA-BP-5199-01A-01D-1429-08	85711183	86627234	94288026	21	24770											
PCDHA9	9752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140229361	140229361	+	Silent	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	140229361	G	A	140229361	2	1	429	1	0	0	0	0	0	0	0	1	11538	1074	38	1		1	PCDHA9	5	140229361	Silent	SNP	G	TCGA-BP-5199-01A-01D-1429-08	53602127	140229361	40685899	22	24771											
FAT2	2196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150905349	150905349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	150905349	A	G	150905349	3	3	429	1	0	0	0	0	1	0	0	0	5697	217	8	3	2591	3	FAT2	5	150905349	Missense_Mutation	SNP	A	TCGA-BP-5199-01A-01D-1429-08	10675988	150905349	30009911	23	24772											
MAK	4117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	10802230	10802230	+	Silent	SNP	A	A	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	10802230	A	T	10802230	2	4	429	1	0	0	0	0	0	0	0	1	9204	233	9	5		5	MAK	6	10802230	Silent	SNP	A	TCGA-BP-5199-01A-01D-1429-08		10802230	160312837	24	24773											
ZNF318	24149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43305844	43305844	+	Silent	SNP	C	C	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	43305844	C	T	43305844	2	4	429	1	0	0	0	0	0	0	0	1	17848	912	32	2		2	ZNF318	6	43305844	Silent	SNP	C	TCGA-BP-5199-01A-01D-1429-08	32503614	43305844	127809223	25	24774											
SDK1	221935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	4014046	4014046	+	Silent	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	4014046	G	A	4014046	2	1	429	1	0	0	0	0	0	0	0	1	13981	1132	40	1		1	SDK1	7	4014046	Silent	SNP	G	TCGA-BP-5199-01A-01D-1429-08		4014046	155124617	26	24775											
TNRC18	84629	broad.mit.edu	37	7	5352561	5352563	+	In_Frame_Del	DEL	GAG	-	-	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	-	5352563	-	-	5352561	7	5	429	1	0	1	0	1	0	0	0	0	16351	942	33	0	961	0	TNRC18	7	5352561	In_Frame_Del	DEL	GAG	TCGA-BP-5199-01A-01D-1429-08	1338515	5352561	153786102	27	24776											
WBSCR17	64409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	70886059	70886059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	70886059	G	T	70886059	3	4	429	1	0	0	0	0	1	0	0	0	17276	1270	44	4	948	4	WBSCR17	7	70886059	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	65533498	70886059	88252604	28	24777											
ZNF3	7551	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99669413	99669413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	99669413	C	T	99669413	3	4	429	1	0	0	0	0	1	0	0	0	17841	835	29	2	779	2	ZNF3	7	99669413	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	28783354	99669413	59469250	29	24778											
TBXAS1	6916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	139529248	139529248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	139529248	T	C	139529248	3	2	429	1	0	0	0	0	1	0	0	0	15676	1580	55	3	64	3	TBXAS1	7	139529248	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	39859835	139529248	19609415	30	24779											
GIMAP6	474344	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150325294	150325294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	150325294	T	C	150325294	3	2	429	1	0	0	0	0	1	0	0	0	6390	1812	63	3	490	3	GIMAP6	7	150325294	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	10796046	150325294	8813369	31	24780											
SHH	6469	broad.mit.edu;hgsc.bcm.edu	37	7	155596300	155596300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	155596300	T	C	155596300	3	2	429	1	0	0	0	0	1	0	0	0	14292	1667	58	3	709	3	SHH	7	155596300	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	5271006	155596300	3542363	32	24781											
RPL30	6156	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	99054891	99054891	+	Missense_Mutation	SNP	G	G	C	rs9879	alternate_allele	TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	99054891	G	C	99054891	3	2	429	1	0	0	0	0	1	0	0	0	13593	1020	36	4	75	4	RPL30	8	99054891	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08		99054891	47309131	33	24782											
TMEM2	23670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	74305109	74305109	+	Silent	SNP	C	C	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	74305109	C	T	74305109	2	4	429	1	0	0	0	0	0	0	0	1	16133	581	21	2		2	TMEM2	9	74305109	Silent	SNP	C	TCGA-BP-5199-01A-01D-1429-08		74305109	66908322	34	24783											
SLC34A3	142680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	140126522	140126522	+	Splice_Site	SNP	A	A	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	140126522	A	T	140126522	5	4	429	1	0	0	0	0	0	0	1	0	14582	202	7	5	90	5	SLC34A3	9	140126522	Splice_Site	SNP	A	TCGA-BP-5199-01A-01D-1429-08	65821413	140126522	1086909	35	24784											
FBXO18	84893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	5937075	5937075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	5937075	G	T	5937075	3	4	429	1	0	0	0	0	1	0	0	0	5738	1000	35	4	90	4	FBXO18	10	5937075	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08		5937075	129597672	36	24785											
ZEB1	6935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	31810616	31810616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	31810616	G	A	31810616	3	1	429	1	0	0	0	0	1	0	0	0	17635	942	33	2	2393	2	ZEB1	10	31810616	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	25873541	31810616	103724131	37	24786											
CBARA1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	74326491	74326491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	74326491	G	T	74326491	3	4	429	1	0	0	0	0	1	0	0	0	2698	1348	47	4	1419	4	CBARA1	10	74326491	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	42515875	74326491	61208256	38	24787											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	10	89720677	89720677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	89720677	T	G	89720677	3	3	429	1	0	0	0	0	1	0	0	0	12748	1403	49	5	858	5	PTEN	10	89720677	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	15394186	89720677	45814070	39	24788											
PTEN	5728	broad.mit.edu	37	10	89720741	89720741	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	89720741	T	T	89720741	4	4	429	1	0	0	0	0	0	1	0	0	12748	827	29	2	922	2	PTEN	10	89720741	Nonsense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	64	89720741	45814006	40	24789											
GBF1	8729	broad.mit.edu;ucsc.edu	37	10	104121490	104121490	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	104121490	G	G	104121490	3	3	429	1	0	0	0	0	1	0	0	0	6278	797	28	4	1554	4	GBF1	10	104121490	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	14400749	104121490	31413257	41	24790											
SHOC2	8036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	112764372	112764372	+	Silent	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	112764372	A	G	112764372	2	3	429	1	0	0	0	0	0	0	0	1	14300	446	16	3		3	SHOC2	10	112764372	Silent	SNP	A	TCGA-BP-5199-01A-01D-1429-08	8642882	112764372	22770375	42	24791											
ZFP91	80829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	58377371	58377371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	58377371	A	G	58377371	3	3	429	1	0	0	0	0	1	0	0	0	17667	412	15	3	449	3	ZFP91	11	58377371	Missense_Mutation	SNP	A	TCGA-BP-5199-01A-01D-1429-08		58377371	76629145	43	24792											
SLC22A12	116085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64368297	64368297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	64368297	G	T	64368297	3	4	429	1	0	0	0	0	1	0	0	0	14456	1212	42	4	1519	4	SLC22A12	11	64368297	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	5990926	64368297	70638219	44	24793											
PPP2R1B	5519	hgsc.bcm.edu;ucsc.edu	37	11	111624250	111624251	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	-	111624251	TT	-	111624250	7	5	429	1	0	1	0	1	0	0	0	0	12393	1493	52	0	975	0	PPP2R1B	11	111624250	Frame_Shift_Del	DEL	TT	TCGA-BP-5199-01A-01D-1429-08	47255953	111624250	23382266	45	24794											
FOXRED1	55572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	126142904	126142904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	126142904	G	T	126142904	3	4	429	1	0	0	0	0	1	0	0	0	6040	1377	48	4	357	4	FOXRED1	11	126142904	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	14518654	126142904	8863612	46	24795	313	2									
FOXRED1	55572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	126142905	126142905	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	126142905	T	A	126142905	4	1	429	1	0	0	0	0	0	1	0	0	6040	1673	58	5	358	5	FOXRED1	11	126142905	Nonsense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	1	126142905	8863611	47	24796	313	2									
WNK1	65125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	993869	993869	+	Missense_Mutation	SNP	C	C	G	rs143361850	alternate_allele	TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	993869	C	G	993869	3	3	429	1	0	0	0	0	1	0	0	0	17389	855	30	4	5475	4	WNK1	12	993869	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08		993869	132858026	48	24797											
ACVRL1	94	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52312803	52312803	+	Silent	SNP	T	T	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	52312803	T	C	52312803	2	2	429	1	0	0	0	0	0	0	0	1	225	1461	51	3		3	ACVRL1	12	52312803	Silent	SNP	T	TCGA-BP-5199-01A-01D-1429-08	51318934	52312803	81539092	49	24798											
KRT75	9119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52827998	52827998	+	Missense_Mutation	SNP	G	G	A	rs148964521		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	52827998	G	A	52827998	3	1	429	1	0	0	0	0	1	0	0	0	8495	1116	39	1	1600	1	KRT75	12	52827998	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	515195	52827998	81023897	50	24799											
COQ10A	93058	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56663289	56663289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	56663289	T	C	56663289	3	2	429	1	0	0	0	0	1	0	0	0	3745	1812	63	3	576	3	COQ10A	12	56663289	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	3835291	56663289	77188606	51	24800											
STAB2	55576	broad.mit.edu;hgsc.bcm.edu	37	12	104126850	104126850	+	Missense_Mutation	SNP	G	G	A	rs147807697	by1000genomes;alternate_allele	TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	104126850	G	A	104126850	3	1	429	1	0	0	0	0	1	0	0	0	15250	1058	37	1	5552	1	STAB2	12	104126850	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	47463561	104126850	29725045	52	24801											
SKA3	221150	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	21742170	21742170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	21742170	C	T	21742170	3	4	429	1	0	0	0	0	1	0	0	0	14367	835	29	2	609	2	SKA3	13	21742170	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08		21742170	93427708	53	24802											
GPR12	2835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	27333002	27333002	+	Silent	SNP	C	C	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	27333002	C	T	27333002	2	4	429	1	0	0	0	0	0	0	0	1	6642	523	19	1		1	GPR12	13	27333002	Silent	SNP	C	TCGA-BP-5199-01A-01D-1429-08	5590832	27333002	87836876	54	24803											
GOLGA5	9950	hgsc.bcm.edu;ucsc.edu	37	14	93299661	93299665	+	Frame_Shift_Del	DEL	GATTA	GATTA	-	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	GATTA	GATTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	-	93299665	GATTA	-	93299661	7	5	429	1	0	1	0	1	0	0	0	0	6563	1045	37	0	1948	0	GOLGA5	14	93299661	Frame_Shift_Del	DEL	GATTA	TCGA-BP-5199-01A-01D-1429-08		93299661	14049879	55	24804											
EIF2AK4	440275	broad.mit.edu;hgsc.bcm.edu	37	15	40268968	40268968	+	Silent	SNP	C	C	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	40268968	C	A	40268968	2	1	429	1	0	0	0	0	0	0	0	1	5001	639	23	4		4	EIF2AK4	15	40268968	Silent	SNP	C	TCGA-BP-5199-01A-01D-1429-08		40268968	62262424	56	24805											
SQRDL	58472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45962137	45962137	+	Silent	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	45962137	A	G	45962137	2	3	429	1	0	0	0	0	0	0	0	1	15141	320	12	3		3	SQRDL	15	45962137	Silent	SNP	A	TCGA-BP-5199-01A-01D-1429-08	5693169	45962137	56569255	57	24806											
ADAM10	102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	58904077	58904077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	58904077	A	G	58904077	3	3	429	1	0	0	0	0	1	0	0	0	234	304	11	3	641	3	ADAM10	15	58904077	Missense_Mutation	SNP	A	TCGA-BP-5199-01A-01D-1429-08	12941940	58904077	43627315	58	24807											
ZNF609	23060	hgsc.bcm.edu;ucsc.edu	37	15	64967277	64967280	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	GAAA	GAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	-	64967280	GAAA	-	64967277	7	5	429	1	0	1	0	1	0	0	0	0	18047	1291	45	0	2238	0	ZNF609	15	64967277	Frame_Shift_Del	DEL	GAAA	TCGA-BP-5199-01A-01D-1429-08	6063200	64967277	37564115	59	24808											
ALPK3	57538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	85405941	85405941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	85405941	T	C	85405941	3	2	429	1	0	0	0	0	1	0	0	0	546	1551	54	3	4849	3	ALPK3	15	85405941	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	20438664	85405941	17125451	60	24809											
SRRM2	23524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2809634	2809634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	2809634	G	T	2809634	3	4	429	1	0	0	0	0	1	0	0	0	15181	1319	46	4	835	4	SRRM2	16	2809634	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08		2809634	87545119	61	24810											
UBN1	29855	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4920562	4920562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	4920562	G	T	4920562	3	4	429	1	0	0	0	0	1	0	0	0	16904	1348	47	4	1391	4	UBN1	16	4920562	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	2110928	4920562	85434191	62	24811											
PYCARD	29108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31213020	31213020	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	31213020	C	G	31213020	3	3	429	1	0	0	0	0	1	0	0	0	12867	912	32	4	117	4	PYCARD	16	31213020	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	26292458	31213020	59141733	63	24812											
FTO	79068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	53878083	53878083	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	53878083	T	G	53878083	3	3	429	1	0	0	0	0	1	0	0	0	6093	1693	59	5	782	5	FTO	16	53878083	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	22665063	53878083	36476670	64	24813											
PLEKHG4	25894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67318935	67318935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	67318935	C	T	67318935	3	4	429	1	0	0	0	0	1	0	0	0	12078	623	22	2	2058	2	PLEKHG4	16	67318935	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	13440852	67318935	23035818	65	24814											
LCAT	3931	hgsc.bcm.edu;ucsc.edu	37	16	67974104	67974117	+	Frame_Shift_Del	DEL	GCCCACGCCGTAAA	GCCCACGCCGTAAA	-	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	GCCCACGCCGTAAA	GCCCACGCCGTAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	-	67974117	GCCCACGCCGTAAA	-	67974104	7	5	429	1	0	1	0	1	0	0	0	0	8665	1190	42	0	300	0	LCAT	16	67974104	Frame_Shift_Del	DEL	GCCCACGCCGTAAA	TCGA-BP-5199-01A-01D-1429-08	655169	67974104	22380649	66	24815											
ZNF276	92822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	89789584	89789584	+	Silent	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	89789584	G	A	89789584	2	1	429	1	0	0	0	0	0	0	0	1	17823	1132	40	1		1	ZNF276	16	89789584	Silent	SNP	G	TCGA-BP-5199-01A-01D-1429-08	21815480	89789584	565169	67	24816											
RILP	83547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1549792	1549792	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	1549792	A	T	1549792	3	4	429	1	0	0	0	0	1	0	0	0	13373	188	7	5	59	5	RILP	17	1549792	Missense_Mutation	SNP	A	TCGA-BP-5199-01A-01D-1429-08		1549792	79645418	68	24817											
MYH4	4622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10369589	10369589	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	10369589	C	T	10369589	5	4	429	1	0	0	0	0	0	0	1	0	10044	550	19	1	5618	1	MYH4	17	10369589	Splice_Site	SNP	C	TCGA-BP-5199-01A-01D-1429-08	8819797	10369589	70825621	69	24818											
HAP1	9001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39884564	39884564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	39884564	C	A	39884564	3	1	429	1	0	0	0	0	1	0	0	0	6960	594	21	4	790	4	HAP1	17	39884564	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	29514975	39884564	41310646	70	24819											
TOM1L1	10040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	53027421	53027421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	53027421	A	G	53027421	3	3	429	1	0	0	0	0	1	0	0	0	16364	333	12	3	1358	3	TOM1L1	17	53027421	Missense_Mutation	SNP	A	TCGA-BP-5199-01A-01D-1429-08	13142857	53027421	28167789	71	24820											
PSMC5	5705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61908394	61908394	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	61908394	A	G	61908394	5	3	429	1	0	0	0	0	0	0	1	0	12700	202	7	3	708	3	PSMC5	17	61908394	Splice_Site	SNP	A	TCGA-BP-5199-01A-01D-1429-08	8880973	61908394	19286816	72	24821											
SLC39A6	25800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	33706569	33706569	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	33706569	A	C	33706569	3	2	429	1	0	0	0	0	1	0	0	0	14635	214	8	5	1913	5	SLC39A6	18	33706569	Missense_Mutation	SNP	A	TCGA-BP-5199-01A-01D-1429-08		33706569	44370679	73	24822											
ZNF653	115950	broad.mit.edu;hgsc.bcm.edu	37	19	11597661	11597661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	11597661	C	A	11597661	3	1	429	1	0	0	0	0	1	0	0	0	18078	710	25	4	485	4	ZNF653	19	11597661	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08		11597661	47531322	74	24823											
SSBP4	170463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18543023	18543023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	G	18543023	A	G	18543023	3	3	429	1	0	0	0	0	1	0	0	0	15194	231	8	3	741	3	SSBP4	19	18543023	Missense_Mutation	SNP	A	TCGA-BP-5199-01A-01D-1429-08	6945362	18543023	40585960	75	24824											
ZNF780A	284323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40582092	40582092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	C	40582092	T	C	40582092	3	2	429	1	0	0	0	0	1	0	0	0	18164	1551	54	3	1799	3	ZNF780A	19	40582092	Missense_Mutation	SNP	T	TCGA-BP-5199-01A-01D-1429-08	22039069	40582092	18546891	76	24825											
PSG1	5669	broad.mit.edu	37	19	43348720	43348720	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	43348720	T	T	43348720	3	4	429	1	0	0	0	0	1	0	0	0	12663	551	19	1		1	PSG1	19	43348720	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	2766628	43348720	15780263	77	24826											
GLTSCR1	29998	broad.mit.edu;hgsc.bcm.edu	37	19	48198183	48198183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	48198183	C	A	48198183	3	1	429	1	0	0	0	0	1	0	0	0	6481	477	17	4	2948	4	GLTSCR1	19	48198183	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08	4849463	48198183	10930800	78	24827											
PRR12	57479	hgsc.bcm.edu	37	19	50099021	50099021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	50099021	G	A	50099021	3	1	429	1	0	0	0	0	1	0	0	0	12594	1000	35	2	1443	2	PRR12	19	50099021	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	1900838	50099021	9029962	79	24828											
CLEC11A	6320	broad.mit.edu;hgsc.bcm.edu	37	19	51228703	51228703	+	Silent	SNP	C	C	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	51228703	C	T	51228703	2	4	429	1	0	0	0	0	0	0	0	1	3498	547	19	1		1	CLEC11A	19	51228703	Silent	SNP	C	TCGA-BP-5199-01A-01D-1429-08	1129682	51228703	7900280	80	24829											
CYB5R3	1727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	43024287	43024287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	43024287	C	A	43024287	3	1	429	1	0	0	0	0	1	0	0	0	4130	521	18	4	591	4	CYB5R3	22	43024287	Missense_Mutation	SNP	C	TCGA-BP-5199-01A-01D-1429-08		43024287	8280279	81	24830											
MSL3	10943	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	11781972	11781973	+	Frame_Shift_Ins	INS	-	-	ATCC	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	ATCC	11781973	-	ATCC	11781972	7	5	429	1	0	1	1	0	0	0	0	0	9886	1522	53	0	853	0	MSL3	23	11781972	Frame_Shift_Ins	INS	-	TCGA-BP-5199-01A-01D-1429-08		11781972	143488588	82	24831											
SMS	6611	broad.mit.edu;hgsc.bcm.edu	37	X	22002497	22002497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	22002497	G	T	22002497	3	4	429	1	0	0	0	0	1	0	0	0	14826	1290	45	4	856	4	SMS	23	22002497	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	10220525	22002497	133268063	83	24832											
KLHL4	56062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	86890699	86890699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	86890699	G	A	86890699	3	1	429	1	0	0	0	0	1	0	0	0	8398	1349	47	2	1883	2	KLHL4	23	86890699	Missense_Mutation	SNP	G	TCGA-BP-5199-01A-01D-1429-08	64888202	86890699	68379861	84	24833											
TCEAL4	79921	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	102841696	102841696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	T	102841696	A	T	102841696	3	4	429	1	0	0	0	0	1	0	0	0	15685	69	3	5	95	5	TCEAL4	23	102841696	Missense_Mutation	SNP	A	TCGA-BP-5199-01A-01D-1429-08	15950997	102841696	52428864	85	24834											
COL4A6	1288	broad.mit.edu;hgsc.bcm.edu	37	X	107681171	107681171	+	Splice_Site	SNP	C	C	A	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	A	107681171	C	A	107681171	5	1	429	1	0	0	0	0	0	0	1	0	3697	521	18	4	5184	4	COL4A6	23	107681171	Splice_Site	SNP	C	TCGA-BP-5199-01A-01D-1429-08	4839475	107681171	47589389	86	24835											
ZNF280C	55609	hgsc.bcm.edu;ucsc.edu	37	X	129354384	129354384	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5199-01A-01D-1429-08	TCGA-BP-5199-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	135f3b77-1474-40d8-87a1-15939136e8cd	59dfbb69-0053-4341-9383-650705585dae	-	129354384	T	-	129354384	7	5	429	1	0	1	0	1	0	0	0	0	17828	1609	56	0	775	0	ZNF280C	23	129354384	Frame_Shift_Del	DEL	T	TCGA-BP-5199-01A-01D-1429-08	21673213	129354384	25916176	87	24836											
MEGF6	1953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	3519075	3519075	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	-	3519075	T	-	3519075	7	5	430	1	0	1	0	1	0	0	0	0	9469	1609	56	0	4548	0	MEGF6	1	3519075	Frame_Shift_Del	DEL	T	TCGA-BP-5200-01A-01D-1429-08		3519075	245731546	1	24837											
PRKACB	5567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	84610143	84610143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	84610143	C	A	84610143	3	1	430	1	0	0	0	0	1	0	0	0	12508	564	20	4	151	4	PRKACB	1	84610143	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	81091068	84610143	164640478	2	24838											
CENPF	1063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	214813680	214813680	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	214813680	A	C	214813680	3	2	430	1	0	0	0	0	1	0	0	0	3233	43	2	5	2041	5	CENPF	1	214813680	Missense_Mutation	SNP	A	TCGA-BP-5200-01A-01D-1429-08	130203537	214813680	34436941	3	24839											
OR2B11	127623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247614532	247614532	+	Silent	SNP	G	G	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	247614532	G	A	247614532	2	1	430	1	0	0	0	0	0	0	0	1	10995	1048	37	1		1	OR2B11	1	247614532	Silent	SNP	G	TCGA-BP-5200-01A-01D-1429-08	32800852	247614532	1636089	4	24840											
HADHA	3030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	26435464	26435464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	26435464	T	C	26435464	3	2	430	1	0	0	0	0	1	0	0	0	6950	1435	50	3	1385	3	HADHA	2	26435464	Missense_Mutation	SNP	T	TCGA-BP-5200-01A-01D-1429-08		26435464	216763909	5	24841											
MAP4K3	8491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	39564108	39564108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	39564108	C	T	39564108	3	4	430	1	0	0	0	0	1	0	0	0	9268	637	22	2	2433	2	MAP4K3	2	39564108	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	13128644	39564108	203635265	6	24842											
WDR92	116143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	68371743	68371743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	68371743	G	T	68371743	3	4	430	1	0	0	0	0	1	0	0	0	17351	1000	35	4	708	4	WDR92	2	68371743	Missense_Mutation	SNP	G	TCGA-BP-5200-01A-01D-1429-08	28807635	68371743	174827630	7	24843											
DDX18	8886	broad.mit.edu;hgsc.bcm.edu	37	2	118578782	118578782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	118578782	A	G	118578782	3	3	430	1	0	0	0	0	1	0	0	0	4347	101	4	3	574	3	DDX18	2	118578782	Missense_Mutation	SNP	A	TCGA-BP-5200-01A-01D-1429-08	50207039	118578782	124620591	8	24844											
RQCD1	9125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219457120	219457120	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	219457120	A	C	219457120	3	2	430	1	0	0	0	0	1	0	0	0	13683	333	12	5	656	5	RQCD1	2	219457120	Missense_Mutation	SNP	A	TCGA-BP-5200-01A-01D-1429-08	100878338	219457120	23742253	9	24845											
SLC19A3	80704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228564091	228564091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	228564091	C	A	228564091	3	1	430	1	0	0	0	0	1	0	0	0	14443	594	21	4	1166	4	SLC19A3	2	228564091	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	9106971	228564091	14635282	10	24846											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643743	52643743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	52643743	T	C	52643743	3	2	430	1	0	0	0	0	1	0	0	0	11498	1638	57	3	2807	3	PBRM1	3	52643743	Missense_Mutation	SNP	T	TCGA-BP-5200-01A-01D-1429-08		52643743	145378687	11	24847											
SEPT11	55752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77932908	77932908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	77932908	A	G	77932908	3	3	430	1	0	0	0	0	1	0	0	0	14074	449	16	3	373	3	SEPT11	4	77932908	Missense_Mutation	SNP	A	TCGA-BP-5200-01A-01D-1429-08		77932908	113221368	12	24848											
FNIP2	57600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	159754698	159754698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	159754698	G	T	159754698	3	4	430	1	0	0	0	0	1	0	0	0	5983	1020	36	4	595	4	FNIP2	4	159754698	Missense_Mutation	SNP	G	TCGA-BP-5200-01A-01D-1429-08	81821790	159754698	31399578	13	24849											
ADAMTS12	81792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33683193	33683193	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	33683193	A	T	33683193	3	4	430	1	0	0	0	0	1	0	0	0	257	246	9	5	4019	5	ADAMTS12	5	33683193	Missense_Mutation	SNP	A	TCGA-BP-5200-01A-01D-1429-08		33683193	147232067	14	24850											
ZFYVE16	9765	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	79769670	79769670	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	79769670	T	A	79769670	3	1	430	1	0	0	0	0	1	0	0	0	17676	1464	51	5	4343	5	ZFYVE16	5	79769670	Missense_Mutation	SNP	T	TCGA-BP-5200-01A-01D-1429-08	46086477	79769670	101145590	15	24851											
TMCO6	55374	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140024201	140024201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	140024201	A	G	140024201	3	3	430	1	0	0	0	0	1	0	0	0	16012	391	14	3	1286	3	TMCO6	5	140024201	Missense_Mutation	SNP	A	TCGA-BP-5200-01A-01D-1429-08	60254531	140024201	40891059	16	24852											
RGL2	5863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33259932	33259932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	33259932	A	G	33259932	3	3	430	1	0	0	0	0	1	0	0	0	13290	304	11	3	56	3	RGL2	6	33259932	Missense_Mutation	SNP	A	TCGA-BP-5200-01A-01D-1429-08		33259932	137855135	17	24853											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56468870	56468870	+	Intron	SNP	G	G	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	56468870	G	T	56468870	1	4	430	0	1	0	0	0	0	0	0	0	4785	957	33	4		4	DST	6	56468870	Intron	SNP	G	TCGA-BP-5200-01A-01D-1429-08	23208938	56468870	114646197	18	24854											
MCHR2	84539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	100390871	100390871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	100390871	C	A	100390871	3	1	430	1	0	0	0	0	1	0	0	0	9390	478	17	4	493	4	MCHR2	6	100390871	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	43922001	100390871	70724196	19	24855											
ALDOB	229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	104187208	104187208	+	Silent	SNP	G	G	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	104187208	G	A	104187208	2	1	430	1	0	0	0	0	0	0	0	1	508	991	35	2		2	ALDOB	9	104187208	Silent	SNP	G	TCGA-BP-5200-01A-01D-1429-08		104187208	37026223	20	24856											
ODF2	4957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131245102	131245102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	131245102	T	C	131245102	3	2	430	1	0	0	0	0	1	0	0	0	10834	1580	55	3	1012	3	ODF2	9	131245102	Missense_Mutation	SNP	T	TCGA-BP-5200-01A-01D-1429-08	27057894	131245102	9968329	21	24857											
STAM	8027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	17750824	17750824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	17750824	C	T	17750824	3	4	430	1	0	0	0	0	1	0	0	0	15260	768	27	1	1309	1	STAM	10	17750824	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08		17750824	117783923	22	24858											
LDB3	11155	broad.mit.edu	37	10	88466360	88466360	+	Silent	SNP	A	C	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	88466360	C	C	88466360	2	2	430	1	0	0	0	0	0	0	0	1	8704	146	6	5		5	LDB3	10	88466360	Silent	SNP	A	TCGA-BP-5200-01A-01D-1429-08	70715536	88466360	47068387	23	24859											
PNLIP	5406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	118305651	118305651	+	Splice_Site	SNP	G	G	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	118305651	G	C	118305651	5	2	430	1	0	0	0	0	0	0	1	0	12156	1275	44	4	49	4	PNLIP	10	118305651	Splice_Site	SNP	G	TCGA-BP-5200-01A-01D-1429-08	29839291	118305651	17229096	24	24860											
PC	5091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66619326	66619326	+	Silent	SNP	G	G	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	66619326	G	A	66619326	2	1	430	1	0	0	0	0	0	0	0	1	11504	1165	41	2		2	PC	11	66619326	Silent	SNP	G	TCGA-BP-5200-01A-01D-1429-08		66619326	68387190	25	24861											
MAML2	84441	broad.mit.edu	37	11	96074938	96074938	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	96074938	T	T	96074938	3	4	430	1	0	0	0	0	1	0	0	0	9213	652	23	1	3368	1	MAML2	11	96074938	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	29455612	96074938	38931578	26	24862											
NCAM1	4684	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	113133587	113133587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	113133587	T	C	113133587	3	2	430	1	0	0	0	0	1	0	0	0	10209	1567	55	3	2335	3	NCAM1	11	113133587	Missense_Mutation	SNP	T	TCGA-BP-5200-01A-01D-1429-08	17058649	113133587	21872929	27	24863											
TPTE2	93492	broad.mit.edu;hgsc.bcm.edu	37	13	20024477	20024477	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	20024477	T	G	20024477	3	3	430	1	0	0	0	0	1	0	0	0	16443	1548	54	5	794	5	TPTE2	13	20024477	Missense_Mutation	SNP	T	TCGA-BP-5200-01A-01D-1429-08		20024477	95145401	28	24864											
OR4E2	26686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	22133740	22133740	+	Silent	SNP	C	C	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	22133740	C	T	22133740	2	4	430	1	0	0	0	0	0	0	0	1	11067	900	32	2		2	OR4E2	14	22133740	Silent	SNP	C	TCGA-BP-5200-01A-01D-1429-08		22133740	85215800	29	24865											
C14orf104	0	broad.mit.edu;hgsc.bcm.edu	37	14	50100543	50100543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	50100543	C	T	50100543	3	4	430	1	0	0	0	0	1	0	0	0	1738	681	24	2	1200	2	C14orf104	14	50100543	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	27966803	50100543	57248997	30	24866											
AMN	81693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	103395248	103395248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	103395248	T	C	103395248	3	2	430	1	0	0	0	0	1	0	0	0	580	1783	62	3	467	3	AMN	14	103395248	Missense_Mutation	SNP	T	TCGA-BP-5200-01A-01D-1429-08	53294705	103395248	3954292	31	24867											
AHNAK2	113146	broad.mit.edu;hgsc.bcm.edu	37	14	105414503	105414503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	105414503	C	G	105414503	3	3	430	1	0	0	0	0	1	0	0	0	415	855	30	4	10106	4	AHNAK2	14	105414503	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	2019255	105414503	1935037	32	24868											
SEMA6D	80031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	48054430	48054430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	48054430	T	G	48054430	3	3	430	1	0	0	0	0	1	0	0	0	14055	1783	62	5	598	5	SEMA6D	15	48054430	Missense_Mutation	SNP	T	TCGA-BP-5200-01A-01D-1429-08		48054430	54476962	33	24869											
CDK10	8558	hgsc.bcm.edu	37	16	89753117	89753117	+	RNA	SNP	G	G	C	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	C	89753117	G	C	89753117	1	2	430	0	1	0	0	0	0	0	0	0	3127	1218	42	4		4	CDK10	16	89753117	RNA	SNP	G	TCGA-BP-5200-01A-01D-1429-08		89753117	601636	34	24870											
CAMTA2	23125	broad.mit.edu;hgsc.bcm.edu	37	17	4876239	4876239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	4876239	G	T	4876239	3	4	430	1	0	0	0	0	1	0	0	0	2616	1165	41	4	1366	4	CAMTA2	17	4876239	Missense_Mutation	SNP	G	TCGA-BP-5200-01A-01D-1429-08		4876239	76318971	35	24871											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11572453	11572453	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	11572453	C	G	11572453	3	3	430	1	0	0	0	0	1	0	0	0	4610	652	23	4	2866	4	DNAH9	17	11572453	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	6696214	11572453	69622757	36	24872											
FBXW10	10517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18682177	18682177	+	Missense_Mutation	SNP	C	C	A	rs150642944		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	18682177	C	A	18682177	3	1	430	1	0	0	0	0	1	0	0	0	5770	507	18	4	2776	4	FBXW10	17	18682177	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	7109724	18682177	62513033	37	24873											
PPP1R9B	84687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48212737	48212737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	48212737	C	G	48212737	3	3	430	1	0	0	0	0	1	0	0	0	12389	864	30	4	44	4	PPP1R9B	17	48212737	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	29530560	48212737	32982473	38	24874											
VEZF1	7716	broad.mit.edu;hgsc.bcm.edu	37	17	56060482	56060482	+	Silent	SNP	C	C	T	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	T	56060482	C	T	56060482	2	4	430	1	0	0	0	0	0	0	0	1	17167	465	17	2		2	VEZF1	17	56060482	Silent	SNP	C	TCGA-BP-5200-01A-01D-1429-08	7847745	56060482	25134728	39	24875											
ABCA10	10349	broad.mit.edu	37	17	67189255	67189255	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	67189255	G	G	67189255	3	3	430	1	0	0	0	0	1	0	0	0	29	593	21	4	2955	4	ABCA10	17	67189255	Missense_Mutation	SNP	C	TCGA-BP-5200-01A-01D-1429-08	11128773	67189255	14005955	40	24876											
TMIGD2	126259	hgsc.bcm.edu	37	19	4294602	4294603	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	4294603	-	G	4294602	7	5	430	1	0	1	1	0	0	0	0	0	16243	768	27	0	332	0	TMIGD2	19	4294602	Frame_Shift_Ins	INS	-	TCGA-BP-5200-01A-01D-1429-08		4294602	54834381	41	24877											
FCGBP	8857	broad.mit.edu	37	19	40398046	40398046	+	Silent	SNP	A	G	G	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	G	40398046	G	G	40398046	2	3	430	1	0	0	0	0	0	0	0	1	5785	273	10	3		3	FCGBP	19	40398046	Silent	SNP	A	TCGA-BP-5200-01A-01D-1429-08	36103444	40398046	18730937	42	24878											
LYPD4	147719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42341277	42341277	+	Silent	SNP	G	G	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	42341277	G	A	42341277	2	1	430	1	0	0	0	0	0	0	0	1	9119	987	35	2		2	LYPD4	19	42341277	Silent	SNP	G	TCGA-BP-5200-01A-01D-1429-08	1943231	42341277	16787706	43	24879											
GAGE10	643832	hgsc.bcm.edu	37	X	49173751	49173751	+	Silent	SNP	G	G	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	49173751	G	A	49173751	2	1	430	1	0	0	0	0	0	0	0	1	6194	1277	45	2		2	GAGE10	23	49173751	Silent	SNP	G	TCGA-BP-5200-01A-01D-1429-08		49173751	106096809	44	24880											
NXF5	55998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101092585	101092585	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5200-01A-01D-1429-08	TCGA-BP-5200-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73d194ce-21db-4b63-9636-d5f4bcbe56de	b801e629-c6f9-454c-a3e5-7fd57f8b1b0b	A	101092585	T	A	101092585	3	1	430	1	0	0	0	0	1	0	0	0	10793	1841	64	5	144	5	NXF5	23	101092585	Missense_Mutation	SNP	T	TCGA-BP-5200-01A-01D-1429-08	51918834	101092585	54177975	45	24881											
VHL	7428	hgsc.bcm.edu	37	3	10183710	10183710	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5200-01A-01D-2101-10	TCGA-BP-5200-11A-01W-1477-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	55851e7b-55d8-4016-a3d5-0c6722b3ed48	4061e057-8271-443a-b827-8fc29da8fbf3	-	10183710	G	-	10183710	7	5	431	1	0	1	0	1	0	0	0	0	17174	1116	39	0	181	0	VHL	3	10183710	Frame_Shift_Del	DEL	G	TCGA-BP-5200-01A-01D-2101-10		10183710	187838720	1	24882											
MTF1	4520	broad.mit.edu;ucsc.edu	37	1	38323150	38323150	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	A	38323150	A	A	38323150	4	1	432	1	0	0	0	0	0	1	0	0	9929	835	29	4	2120	4	MTF1	1	38323150	Nonsense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08		38323150	210927471	1	24883											
TXNIP	10628	broad.mit.edu;ucsc.edu	37	1	145438912	145438912	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	G	145438912	G	G	145438912	3	3	432	1	0	0	0	0	1	0	0	0	16815	246	9	3	112	3	TXNIP	1	145438912	Missense_Mutation	SNP	A	TCGA-BP-5201-01A-01D-1429-08	107115762	145438912	103811709	2	24884											
GON4L	54856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155732098	155732098	+	Silent	SNP	C	C	A	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	A	155732098	C	A	155732098	2	1	432	1	0	0	0	0	0	0	0	1	6579	610	22	4		4	GON4L	1	155732098	Silent	SNP	C	TCGA-BP-5201-01A-01D-1429-08	10293186	155732098	93518523	3	24885											
ALMS1	7840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	73680768	73680768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	C	73680768	A	C	73680768	3	2	432	1	0	0	0	0	1	0	0	0	535	449	16	5	7141	5	ALMS1	2	73680768	Missense_Mutation	SNP	A	TCGA-BP-5201-01A-01D-1429-08		73680768	169518605	4	24886											
BOC	91653	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	112998188	112998188	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	C	112998188	A	C	112998188	3	2	432	1	0	0	0	0	1	0	0	0	1481	101	4	5	1944	5	BOC	3	112998188	Missense_Mutation	SNP	A	TCGA-BP-5201-01A-01D-1429-08		112998188	85024242	5	24887											
TCTEX1D2	255758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	196022891	196022891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	196022891	C	T	196022891	3	4	432	1	0	0	0	0	1	0	0	0	15732	826	29	2	69	2	TCTEX1D2	3	196022891	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08	83024703	196022891	1999539	6	24888											
BMPR1B	658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	96035969	96035969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	96035969	G	T	96035969	3	4	432	1	0	0	0	0	1	0	0	0	1470	1377	48	4	248	4	BMPR1B	4	96035969	Missense_Mutation	SNP	G	TCGA-BP-5201-01A-01D-1429-08		96035969	95118307	7	24889											
LNPEP	4012	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	96315099	96315099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	G	96315099	A	G	96315099	3	3	432	1	0	0	0	0	1	0	0	0	8871	43	2	3	283	3	LNPEP	5	96315099	Missense_Mutation	SNP	A	TCGA-BP-5201-01A-01D-1429-08		96315099	84600161	8	24890											
C6orf162	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	88046871	88046871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	C	88046871	T	C	88046871	3	2	432	1	0	0	0	0	1	0	0	0	2342	1551	54	3	124	3	C6orf162	6	88046871	Missense_Mutation	SNP	T	TCGA-BP-5201-01A-01D-1429-08		88046871	83068196	9	24891											
TNRC18	84629	broad.mit.edu	37	7	5364768	5364768	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	-	5364768	-	-	5364768	7	5	432	1	0	1	0	1	0	0	0	0	16351	1608	56	0	2691	0	TNRC18	7	5364768	Frame_Shift_Del	DEL	T	TCGA-BP-5201-01A-01D-1429-08		5364768	153773895	10	24892											
RSPH10B2	728194	broad.mit.edu	37	7	6006558	6006558	+	Missense_Mutation	SNP	C	T	T	rs150311566		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	6006558	T	T	6006558	3	4	432	1	0	0	0	0	1	0	0	0	13717	536	19	1	2498	1	RSPH10B2	7	6006558	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08	641790	6006558	153132105	11	24893											
SAMD9L	219285	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92763473	92763473	+	Silent	SNP	T	T	C	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	C	92763473	T	C	92763473	2	2	432	1	0	0	0	0	0	0	0	1	13840	1741	61	3		3	SAMD9L	7	92763473	Silent	SNP	T	TCGA-BP-5201-01A-01D-1429-08	86756915	92763473	66375190	12	24894											
PRSS55	203074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	10396087	10396087	+	Silent	SNP	C	C	G	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	G	10396087	C	G	10396087	2	3	432	1	0	0	0	0	0	0	0	1	12644	610	22	4		4	PRSS55	8	10396087	Silent	SNP	C	TCGA-BP-5201-01A-01D-1429-08		10396087	135967935	13	24895											
SNTG1	54212	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	51415372	51415372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	51415372	C	T	51415372	3	4	432	1	0	0	0	0	1	0	0	0	14887	565	20	2	424	2	SNTG1	8	51415372	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08	41019285	51415372	94948650	14	24896											
RGS22	26166	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	101014479	101014479	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	G	101014479	T	G	101014479	3	3	432	1	0	0	0	0	1	0	0	0	13318	1841	64	5	1093	5	RGS22	8	101014479	Missense_Mutation	SNP	T	TCGA-BP-5201-01A-01D-1429-08	49599107	101014479	45349543	15	24897											
PHF20L1	51105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	133850030	133850030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	C	133850030	T	C	133850030	3	2	432	1	0	0	0	0	1	0	0	0	11839	1435	50	3	2323	3	PHF20L1	8	133850030	Missense_Mutation	SNP	T	TCGA-BP-5201-01A-01D-1429-08	32835551	133850030	12513992	16	24898											
NOL6	65083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	33467191	33467191	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	A	33467191	C	A	33467191	4	1	432	1	0	0	0	0	0	1	0	0	10532	864	30	4	1697	4	NOL6	9	33467191	Nonsense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08		33467191	107746240	17	24899											
TUBB2C	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	140137408	140137408	+	Silent	SNP	C	C	A	rs151064868		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	A	140137408	C	A	140137408	2	1	432	1	0	0	0	0	0	0	0	1	16768	813	29	4		4	TUBB2C	9	140137408	Silent	SNP	C	TCGA-BP-5201-01A-01D-1429-08	106670217	140137408	1076023	18	24900											
IDE	3416	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	94239093	94239093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	G	94239093	A	G	94239093	3	3	432	1	0	0	0	0	1	0	0	0	7500	449	16	3	1278	3	IDE	10	94239093	Missense_Mutation	SNP	A	TCGA-BP-5201-01A-01D-1429-08		94239093	41295654	19	24901											
ARCN1	372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118454666	118454666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	118454666	C	T	118454666	3	4	432	1	0	0	0	0	1	0	0	0	842	797	28	2	604	2	ARCN1	11	118454666	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08		118454666	16551850	20	24902											
TMPO	7112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	98927778	98927778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	98927778	G	T	98927778	3	4	432	1	0	0	0	0	1	0	0	0	16249	933	33	4	1757	4	TMPO	12	98927778	Missense_Mutation	SNP	G	TCGA-BP-5201-01A-01D-1429-08		98927778	34924117	21	24903											
HCFC2	29915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104476292	104476293	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	104476293	-	T	104476292	7	5	432	1	0	1	1	0	0	0	0	0	7000	1261	44	0	804	0	HCFC2	12	104476292	Frame_Shift_Ins	INS	-	TCGA-BP-5201-01A-01D-1429-08	5548514	104476292	29375603	22	24904											
CYP1A2	1544	hgsc.bcm.edu	37	15	75044488	75044489	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	G	75044489	-	G	75044488	7	5	432	1	0	1	1	0	0	0	0	0	4152	759	27	0	1080	0	CYP1A2	15	75044488	Frame_Shift_Ins	INS	-	TCGA-BP-5201-01A-01D-1429-08		75044488	27486904	23	24905											
ZSCAN10	84891	broad.mit.edu	37	16	3139570	3139570	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	A	3139570	A	A	3139570	3	1	432	1	0	0	0	0	1	0	0	0	18239	1203	42	2	481	2	ZSCAN10	16	3139570	Missense_Mutation	SNP	G	TCGA-BP-5201-01A-01D-1429-08		3139570	87215183	24	24906											
CDT1	81620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	88872184	88872184	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	G	88872184	T	G	88872184	3	3	432	1	0	0	0	0	1	0	0	0	3182	1522	53	5	757	5	CDT1	16	88872184	Missense_Mutation	SNP	T	TCGA-BP-5201-01A-01D-1429-08	85732614	88872184	1482569	25	24907											
PHF12	57649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27251182	27251182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	27251182	C	T	27251182	3	4	432	1	0	0	0	0	1	0	0	0	11830	710	25	2	2628	2	PHF12	17	27251182	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08		27251182	53944028	26	24908											
KRT31	3881	broad.mit.edu;hgsc.bcm.edu	37	17	39553695	39553695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	39553695	C	T	39553695	3	4	432	1	0	0	0	0	1	0	0	0	8474	652	23	1	1181	1	KRT31	17	39553695	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08	12302513	39553695	41641515	27	24909											
VAT1	10493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41169909	41169909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	A	41169909	T	A	41169909	3	1	432	1	0	0	0	0	1	0	0	0	17141	1638	57	5	388	5	VAT1	17	41169909	Missense_Mutation	SNP	T	TCGA-BP-5201-01A-01D-1429-08	1616214	41169909	40025301	28	24910											
LRRC37A2	474170	broad.mit.edu	37	17	44625842	44625842	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	-	44625842	-	-	44625842	7	5	432	1	0	1	0	1	0	0	0	0	8999	1059	37	0	3371	0	LRRC37A2	17	44625842	Frame_Shift_Del	DEL	G	TCGA-BP-5201-01A-01D-1429-08	3455933	44625842	36569368	29	24911											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	6980564	6980564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	6980564	C	T	6980564	3	4	432	1	0	0	0	0	1	0	0	0	8612	681	24	2	3352	2	LAMA1	18	6980564	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08		6980564	71096684	30	24912											
ELP2	55250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	33734957	33734957	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	G	33734957	T	G	33734957	3	3	432	1	0	0	0	0	1	0	0	0	5082	1435	50	5	1316	5	ELP2	18	33734957	Missense_Mutation	SNP	T	TCGA-BP-5201-01A-01D-1429-08	26754393	33734957	44342291	31	24913											
LONP1	9361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	5699087	5699087	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	C	5699087	G	C	5699087	3	2	432	1	0	0	0	0	1	0	0	0	8899	1116	39	4	1279	4	LONP1	19	5699087	Missense_Mutation	SNP	G	TCGA-BP-5201-01A-01D-1429-08		5699087	53429896	32	24914											
ADAMTS10	81794	broad.mit.edu	37	19	8651052	8651052	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	8651052	T	T	8651052	3	4	432	1	0	0	0	0	1	0	0	0	256	962	34	4	717	4	ADAMTS10	19	8651052	Missense_Mutation	SNP	G	TCGA-BP-5201-01A-01D-1429-08	2951965	8651052	50477931	33	24915											
NDUFA13	51079	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19637065	19637065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	19637065	C	T	19637065	3	4	432	1	0	0	0	0	1	0	0	0	10270	768	27	1	175	1	NDUFA13	19	19637065	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08	10986013	19637065	39491918	34	24916											
ADAM33	80332	broad.mit.edu;hgsc.bcm.edu	37	20	3653456	3653456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	A	3653456	G	A	3653456	3	1	432	1	0	0	0	0	1	0	0	0	250	1203	42	2	1262	2	ADAM33	20	3653456	Missense_Mutation	SNP	G	TCGA-BP-5201-01A-01D-1429-08		3653456	59372064	35	24917											
RALGAPB	57148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	37150191	37150191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	T	37150191	C	T	37150191	3	4	432	1	0	0	0	0	1	0	0	0	13028	855	30	2	1503	2	RALGAPB	20	37150191	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08	33496735	37150191	25875329	36	24918											
ITSN1	6453	broad.mit.edu	37	21	35153771	35153771	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	A	35153771	A	A	35153771	3	1	432	1	0	0	0	0	1	0	0	0	7933	827	29	4	1657	4	ITSN1	21	35153771	Missense_Mutation	SNP	C	TCGA-BP-5201-01A-01D-1429-08		35153771	12976124	37	24919											
KDM6A	7403	broad.mit.edu;hgsc.bcm.edu	37	X	44928976	44928976	+	Silent	SNP	G	G	A	novel		TCGA-BP-5201-01A-01D-1429-08	TCGA-BP-5201-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	243c77a9-1591-45ac-b048-a5687a77c764	5308d75f-580e-4f35-bd1f-3340a8bd9a8d	A	44928976	G	A	44928976	2	1	432	1	0	0	0	0	0	0	0	1	8144	991	35	2		2	KDM6A	23	44928976	Silent	SNP	G	TCGA-BP-5201-01A-01D-1429-08		44928976	110341584	38	24920											
ACTRT2	140625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	2938986	2938986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	2938986	G	A	2938986	3	1	433	1	0	0	0	0	1	0	0	0	219	1058	37	1	738	1	ACTRT2	1	2938986	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08		2938986	246311635	1	24921											
FBXO2	26232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11709907	11709907	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	C	11709907	A	C	11709907	3	2	433	1	0	0	0	0	1	0	0	0	5739	126	5	5	356	5	FBXO2	1	11709907	Missense_Mutation	SNP	A	TCGA-BP-5202-01A-02D-1429-08	8770921	11709907	237540714	2	24922											
CATSPER4	378807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26517881	26517881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	26517881	C	T	26517881	3	4	433	1	0	0	0	0	1	0	0	0	2692	739	26	2	323	2	CATSPER4	1	26517881	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08	14807974	26517881	222732740	3	24923											
HRNR	388697	broad.mit.edu;hgsc.bcm.edu	37	1	152185823	152185823	+	Missense_Mutation	SNP	C	C	A	rs41266120	byfrequency;by1000genomes;alternate_allele	TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	152185823	C	A	152185823	3	1	433	1	0	0	0	0	1	0	0	0	7366	884	31	4	274	4	HRNR	1	152185823	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08	125667942	152185823	97064798	4	24924											
NIT1	4817	hgsc.bcm.edu;ucsc.edu	37	1	161089670	161089683	+	Frame_Shift_Del	DEL	GCCTATGTGTGAAA	GCCTATGTGTGAAA	-	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	GCCTATGTGTGAAA	GCCTATGTGTGAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	-	161089683	GCCTATGTGTGAAA	-	161089670	7	5	433	1	0	1	0	1	0	0	0	0	10440	1190	42	0	594	0	NIT1	1	161089670	Frame_Shift_Del	DEL	GCCTATGTGTGAAA	TCGA-BP-5202-01A-02D-1429-08	8903847	161089670	88160951	5	24925											
BTG2	7832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203276485	203276485	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	203276485	T	A	203276485	4	1	433	1	0	0	0	0	0	1	0	0	1556	1702	59	5	402	5	BTG2	1	203276485	Nonsense_Mutation	SNP	T	TCGA-BP-5202-01A-02D-1429-08	42186815	203276485	45974136	6	24926											
OPTC	26254	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203465247	203465247	+	Silent	SNP	C	C	T	rs139083417	byfrequency	TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	203465247	C	T	203465247	2	4	433	1	0	0	0	0	0	0	0	1	10895	755	27	1		1	OPTC	1	203465247	Silent	SNP	C	TCGA-BP-5202-01A-02D-1429-08	188762	203465247	45785374	7	24927											
RCOR3	55758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	211486237	211486237	+	Silent	SNP	T	T	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	211486237	T	A	211486237	2	1	433	1	0	0	0	0	0	0	0	1	13197	1596	56	5		5	RCOR3	1	211486237	Silent	SNP	T	TCGA-BP-5202-01A-02D-1429-08	8020990	211486237	37764384	8	24928											
EPM2AIP1	9852	hgsc.bcm.edu	37	3	37032775	37032775	+	Silent	SNP	A	A	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	37032775	A	T	37032775	2	4	433	1	0	0	0	0	0	0	0	1	5186	117	5	5		5	EPM2AIP1	3	37032775	Silent	SNP	A	TCGA-BP-5202-01A-02D-1429-08		37032775	160989655	9	24929											
COL6A6	131873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130283940	130283940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	130283940	G	T	130283940	3	4	433	1	0	0	0	0	1	0	0	0	3705	1029	36	4	774	4	COL6A6	3	130283940	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08	93251165	130283940	67738490	10	24930											
C4orf23	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	8469669	8469669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	G	8469669	A	G	8469669	3	3	433	1	0	0	0	0	1	0	0	0	2258	391	14	3	1557	3	C4orf23	4	8469669	Missense_Mutation	SNP	A	TCGA-BP-5202-01A-02D-1429-08		8469669	182684607	11	24931											
GABRG1	2565	hgsc.bcm.edu	37	4	46043264	46043264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	46043264	G	T	46043264	3	4	433	1	0	0	0	0	1	0	0	0	6178	1000	35	4	262	4	GABRG1	4	46043264	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08	37573595	46043264	145111012	12	24932											
FRAS1	80144	broad.mit.edu;hgsc.bcm.edu	37	4	79296891	79296891	+	Splice_Site	SNP	A	A	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	79296891	A	T	79296891	5	4	433	1	0	0	0	0	0	0	1	0	6049	434	15	5	3252	5	FRAS1	4	79296891	Splice_Site	SNP	A	TCGA-BP-5202-01A-02D-1429-08	33253627	79296891	111857385	13	24933											
NPNT	255743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	106848559	106848561	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	GTT	GTT	GTT	-	GTT	GTT	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	-	106848561	GTT	-	106848559	7	5	433	1	0	1	0	1	0	0	0	0	10597	1261	44	0	304	0	NPNT	4	106848559	In_Frame_Del	DEL	GTT	TCGA-BP-5202-01A-02D-1429-08	27551668	106848559	84305717	14	24934											
SPZ1	84654	broad.mit.edu	37	5	79616434	79616434	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	79616434	A	A	79616434	3	1	433	1	0	0	0	0	1	0	0	0	15139	943	33	2	402	2	SPZ1	5	79616434	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08		79616434	101298826	15	24935	314	2									
SPZ1	84654	broad.mit.edu;hgsc.bcm.edu	37	5	79616440	79616440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	C	79616440	G	C	79616440	3	2	433	1	0	0	0	0	1	0	0	0	15139	943	33	4	408	4	SPZ1	5	79616440	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08	6	79616440	101298820	16	24936	314	2									
DNAJC30	84277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	73097664	73097664	+	Silent	SNP	G	G	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	73097664	G	A	73097664	2	1	433	1	0	0	0	0	0	0	0	1	4650	1194	42	2		2	DNAJC30	7	73097664	Silent	SNP	G	TCGA-BP-5202-01A-02D-1429-08		73097664	86040999	17	24937											
LAMB1	3912	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107564469	107564469	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	G	107564469	C	G	107564469	3	3	433	1	0	0	0	0	1	0	0	0	8617	913	32	4	76	4	LAMB1	7	107564469	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08	34466805	107564469	51574194	18	24938											
RP1L1	94137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	10470413	10470413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	10470413	C	T	10470413	3	4	433	1	0	0	0	0	1	0	0	0	13546	652	23	1	6011	1	RP1L1	8	10470413	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08		10470413	135893609	19	24939											
CSPP1	79848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	68107615	68107615	+	Splice_Site	SNP	A	A	G	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	G	68107615	A	G	68107615	5	3	433	1	0	0	0	0	0	0	1	0	3964	434	15	3	3680	3	CSPP1	8	68107615	Splice_Site	SNP	A	TCGA-BP-5202-01A-02D-1429-08	57637202	68107615	78256407	20	24940											
OR13C5	138799	broad.mit.edu;hgsc.bcm.edu	37	9	107361334	107361334	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	G	107361334	C	G	107361334	3	3	433	1	0	0	0	0	1	0	0	0	10944	826	29	4	597	4	OR13C5	9	107361334	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08		107361334	33852097	21	24941											
ASTN2	23245	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	119976970	119976970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	G	119976970	A	G	119976970	3	3	433	1	0	0	0	0	1	0	0	0	1065	391	14	3	3496	3	ASTN2	9	119976970	Missense_Mutation	SNP	A	TCGA-BP-5202-01A-02D-1429-08	12615636	119976970	21236461	22	24942											
FGFR2	2263	broad.mit.edu	37	10	123353298	123353298	+	Missense_Mutation	SNP	C	T	T	rs143978938	by1000genomes	TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	123353298	T	T	123353298	3	4	433	1	0	0	0	0	1	0	0	0	5873	536	19	1	2755	1	FGFR2	10	123353298	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08		123353298	12181449	23	24943											
CCDC87	55231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66359599	66359599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	66359599	C	A	66359599	3	1	433	1	0	0	0	0	1	0	0	0	2864	622	22	4	1665	4	CCDC87	11	66359599	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08		66359599	68646917	24	24944											
BIN2	51411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	51696509	51696509	+	Silent	SNP	G	G	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	51696509	G	A	51696509	2	1	433	1	0	0	0	0	0	0	0	1	1433	1078	38	1		1	BIN2	12	51696509	Silent	SNP	G	TCGA-BP-5202-01A-02D-1429-08		51696509	82155386	25	24945											
MARS	4141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57908819	57908819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	G	57908819	A	G	57908819	3	3	433	1	0	0	0	0	1	0	0	0	9323	333	12	3	2248	3	MARS	12	57908819	Missense_Mutation	SNP	A	TCGA-BP-5202-01A-02D-1429-08	6212310	57908819	75943076	26	24946											
CAND1	55832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	67698394	67698394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	G	67698394	A	G	67698394	3	3	433	1	0	0	0	0	1	0	0	0	2617	217	8	3	1337	3	CAND1	12	67698394	Missense_Mutation	SNP	A	TCGA-BP-5202-01A-02D-1429-08	9789575	67698394	66153501	27	24947											
CIT	11113	hgsc.bcm.edu;ucsc.edu	37	12	120173115	120173115	+	Missense_Mutation	SNP	G	G	T	rs79892909	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	120173115	G	T	120173115	3	4	433	1	0	0	0	0	1	0	0	0	3440	1136	40	4	3299	4	CIT	12	120173115	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08	52474721	120173115	13678780	28	24948											
PLEKHG3	26030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	65208079	65208079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	65208079	G	A	65208079	3	1	433	1	0	0	0	0	1	0	0	0	12077	1116	39	1	1726	1	PLEKHG3	14	65208079	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08		65208079	42141461	29	24949											
CYP19A1	1588	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51520122	51520122	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	G	51520122	C	G	51520122	3	3	433	1	0	0	0	0	1	0	0	0	4150	565	20	4	1234	4	CYP19A1	15	51520122	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08		51520122	51011270	30	24950											
IGF1R	3480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	99482525	99482525	+	Silent	SNP	C	C	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	99482525	C	T	99482525	2	4	433	1	0	0	0	0	0	0	0	1	7578	883	31	1		1	IGF1R	15	99482525	Silent	SNP	C	TCGA-BP-5202-01A-02D-1429-08	47962403	99482525	3048867	31	24951											
SRL	6345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4245640	4245640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	4245640	C	T	4245640	3	4	433	1	0	0	0	0	1	0	0	0	15162	739	26	2	905	2	SRL	16	4245640	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08		4245640	86109113	32	24952											
ZNF276	92822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	89793740	89793740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	C	89793740	G	C	89793740	3	2	433	1	0	0	0	0	1	0	0	0	17823	942	33	4	1078	4	ZNF276	16	89793740	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08	85548100	89793740	561013	33	24953											
ACAP1	9744	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7246741	7246741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	7246741	G	A	7246741	3	1	433	1	0	0	0	0	1	0	0	0	118	1232	43	2	410	2	ACAP1	17	7246741	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08		7246741	73948469	34	24954											
ACACA	31	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	35600351	35600351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	C	35600351	T	C	35600351	3	2	433	1	0	0	0	0	1	0	0	0	106	1609	56	3	4424	3	ACACA	17	35600351	Missense_Mutation	SNP	T	TCGA-BP-5202-01A-02D-1429-08	28353610	35600351	45594859	35	24955											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9069219	9069219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	9069219	G	A	9069219	3	1	433	1	0	0	0	0	1	0	0	0	9980	1000	35	2	25624	2	MUC16	19	9069219	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08		9069219	50059764	36	24956											
KRI1	65095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10668296	10668296	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	G	10668296	C	G	10668296	3	3	433	1	0	0	0	0	1	0	0	0	8451	884	31	4	578	4	KRI1	19	10668296	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08	1599077	10668296	48460687	37	24957											
USP16	10600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	30415852	30415852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	30415852	G	T	30415852	3	4	433	1	0	0	0	0	1	0	0	0	17059	1290	45	4	1334	4	USP16	21	30415852	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08		30415852	17714043	38	24958											
FOXRED2	80020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	36900193	36900193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	T	36900193	C	T	36900193	3	4	433	1	0	0	0	0	1	0	0	0	6041	652	23	1	1077	1	FOXRED2	22	36900193	Missense_Mutation	SNP	C	TCGA-BP-5202-01A-02D-1429-08		36900193	14404373	39	24959											
HDAC10	83933	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50685358	50685358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	A	50685358	G	A	50685358	3	1	433	1	0	0	0	0	1	0	0	0	7012	1319	46	2	573	2	HDAC10	22	50685358	Missense_Mutation	SNP	G	TCGA-BP-5202-01A-02D-1429-08	13785165	50685358	619208	40	24960											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53253992	53253992	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BP-5202-01A-02D-1429-08	TCGA-BP-5202-11A-01D-1429-08	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	accc7214-d441-4a72-a2eb-9f2811c38a3e	222d710e-2151-4a97-aede-2e7c58707b5b	-	53253992	G	-	53253992	7	5	433	1	0	1	0	1	0	0	0	0	8142	1000	35	0	4804	0	KDM5C	23	53253992	Frame_Shift_Del	DEL	G	TCGA-BP-5202-01A-02D-1429-08		53253992	102016568	41	24961											
RERE	473	broad.mit.edu;bcgsc.ca	37	1	8425998	8425998	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	-	8425998	T	-	8425998	7	5	434	1	0	1	0	1	0	0	0	0	13244	1667	58	0	3423	0	RERE	1	8425998	Frame_Shift_Del	DEL	T	TCGA-BQ-5875-01A-11D-1589-08		8425998	240824623	1	24962											
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15894410	15894410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	15894410	G	A	15894410	3	1	434	1	0	0	0	0	1	0	0	0	4637	1261	44	2	2141	2	DNAJC16	1	15894410	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	7468412	15894410	233356211	2	24963											
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	15894493	15894493	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	-	15894493	G	-	15894493	7	5	434	1	0	1	0	1	0	0	0	0	4637	1000	35	0	2224	0	DNAJC16	1	15894493	Frame_Shift_Del	DEL	G	TCGA-BQ-5875-01A-11D-1589-08	83	15894493	233356128	3	24964											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32203282	32203282	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	32203282	G	A	32203282	2	1	434	1	0	0	0	0	0	0	0	1	1299	1219	43	2		2	BAI2	1	32203282	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	16308789	32203282	217047339	4	24965											
CSMD2	114784	hgsc.bcm.edu	37	1	34128679	34128679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	34128679	C	G	34128679	3	3	434	1	0	0	0	0	1	0	0	0	3947	507	18	4	6693	4	CSMD2	1	34128679	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	1925397	34128679	215121942	5	24966											
LEPROT	54741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	65895651	65895651	+	Silent	SNP	C	C	A	rs147651845	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	65895651	C	A	65895651	2	1	434	1	0	0	0	0	0	0	0	1	8739	875	31	4		4	LEPROT	1	65895651	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	31766972	65895651	183354970	6	24967											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94502837	94502837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	94502837	C	A	94502837	3	1	434	1	0	0	0	0	1	0	0	0	34	507	18	4	3248	4	ABCA4	1	94502837	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	28607186	94502837	154747784	7	24968											
KCNA2	3737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111146524	111146524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	111146524	C	A	111146524	3	1	434	1	0	0	0	0	1	0	0	0	8010	536	19	4	622	4	KCNA2	1	111146524	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	16643687	111146524	138104097	8	24969											
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	118535132	118535132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	118535132	A	T	118535132	3	4	434	1	0	0	0	0	1	0	0	0	14992	275	10	5	1405	5	SPAG17	1	118535132	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	7388608	118535132	130715489	9	24970											
HRNR	388697	hgsc.bcm.edu	37	1	152187192	152187192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	152187192	G	A	152187192	3	1	434	1	0	0	0	0	1	0	0	0	7366	1377	48	2	1643	2	HRNR	1	152187192	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	33652060	152187192	97063429	10	24971											
CADM3	57863	broad.mit.edu	37	1	159169659	159169659	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	159169659	G	A	159169659	2	1	434	1	0	0	0	0	0	0	0	1	2570	1190	42	2		2	CADM3	1	159169659	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	6982467	159169659	90080962	11	24972											
FMO4	2329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171303684	171303684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	171303684	T	C	171303684	3	2	434	1	0	0	0	0	1	0	0	0	5964	1493	52	3	984	3	FMO4	1	171303684	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	12134025	171303684	77946937	12	24973											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180063597	180063597	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	180063597	A	T	180063597	3	4	434	1	0	0	0	0	1	0	0	0	3256	188	7	5	8487	5	CEP350	1	180063597	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	8759913	180063597	69187024	13	24974											
OBSCN	84033	hgsc.bcm.edu	37	1	228494611	228494611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	228494611	T	C	228494611	3	2	434	1	0	0	0	0	1	0	0	0	10819	1696	59	3	12110	3	OBSCN	1	228494611	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	48431014	228494611	20756010	14	24975											
OR2M3	127062	broad.mit.edu	37	1	248367073	248367073	+	Missense_Mutation	SNP	G	G	A	rs138010167		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	248367073	G	A	248367073	3	1	434	1	0	0	0	0	1	0	0	0	11018	1087	38	1	706	1	OR2M3	1	248367073	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	19872462	248367073	883548	15	24976											
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9630624	9630624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	9630624	C	T	9630624	3	4	434	1	0	0	0	0	1	0	0	0	238	594	21	2	321	2	ADAM17	2	9630624	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		9630624	233568749	16	24977											
FAM49A	81553	hgsc.bcm.edu;broad.mit.edu	37	2	16736394	16736394	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	16736394	A	T	16736394	3	4	434	1	0	0	0	0	1	0	0	0	5582	449	16	5	128	5	FAM49A	2	16736394	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	7105770	16736394	226462979	17	24978											
PIGF	5281	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	46815297	46815297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	46815297	T	C	46815297	3	2	434	1	0	0	0	0	1	0	0	0	11894	1522	53	3	174	3	PIGF	2	46815297	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	30078903	46815297	196384076	18	24979											
TTC7A	57217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	47300864	47300864	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	47300864	C	T	47300864	2	4	434	1	0	0	0	0	0	0	0	1	16724	726	26	2		2	TTC7A	2	47300864	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	485567	47300864	195898509	19	24980											
SPTBN1	6711	hgsc.bcm.edu	37	2	54876308	54876308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	54876308	A	G	54876308	3	3	434	1	0	0	0	0	1	0	0	0	15131	188	7	3	5390	3	SPTBN1	2	54876308	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	7575444	54876308	188323065	20	24981											
IL1R2	7850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102626224	102626224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	102626224	G	T	102626224	3	4	434	1	0	0	0	0	1	0	0	0	7666	1174	41	4	274	4	IL1R2	2	102626224	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	47749916	102626224	140573149	21	24982											
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	162711596	162711597	+	Missense_Mutation	DNP	CT	CT	AG	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	AG	162711597	CT	AG	162711596	3	1	434	1	0	0	0	0	1	0	0	0	14664	565	20	4	636	4	SLC4A10	2	162711596	Missense_Mutation	DNP	CT	TCGA-BQ-5875-01A-11D-1589-08	60085372	162711596	80487777	22	24983											
CYBRD1	79901	broad.mit.edu	37	2	172379114	172379114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	172379114	G	A	172379114	3	1	434	1	0	0	0	0	1	0	0	0	4136	1203	42	2	61	2	CYBRD1	2	172379114	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	9667518	172379114	70820259	23	24984											
RAPH1	65059	broad.mit.edu	37	2	204305855	204305855	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	204305855	C	T	204305855	2	4	434	1	0	0	0	0	0	0	0	1	13063	755	27	1		1	RAPH1	2	204305855	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	31926741	204305855	38893518	24	24985											
ITPR1	3708	bcgsc.ca	37	3	4685828	4685828	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	4685828	A	T	4685828	2	4	434	1	0	0	0	0	0	0	0	1	7927	410	15	5		5	ITPR1	3	4685828	Silent	SNP	A	TCGA-BQ-5875-01A-11D-1589-08		4685828	193336602	25	24986											
STAC	6769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36587768	36587768	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	36587768	T	G	36587768	3	3	434	1	0	0	0	0	1	0	0	0	15251	1522	53	5	1238	5	STAC	3	36587768	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	31901940	36587768	161434662	26	24987											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47061276	47061276	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	47061276	T	A	47061276	4	1	434	1	0	0	0	0	0	1	0	0	14144	1792	62	5	301	5	SETD2	3	47061276	Nonsense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	10473508	47061276	150961154	27	24988											
NPRL2	10641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50386372	50386372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	50386372	T	A	50386372	3	1	434	1	0	0	0	0	1	0	0	0	10604	1435	50	5	652	5	NPRL2	3	50386372	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	3325096	50386372	147636058	28	24989											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52441190	52441190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	52441190	C	T	52441190	3	4	434	1	0	0	0	0	1	0	0	0	1311	608	21	2	1653	2	BAP1	3	52441190	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	2054818	52441190	145581240	29	24990											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101378652	101378652	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	101378652	G	C	101378652	3	2	434	1	0	0	0	0	1	0	0	0	17536	1377	48	4	1164	4	ZBTB11	3	101378652	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	48937462	101378652	96643778	30	24991											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	44450342	44450342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	44450342	C	T	44450342	3	4	434	1	0	0	0	0	1	0	0	0	8122	855	30	2	1230	2	KCTD8	4	44450342	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		44450342	146703934	31	24992											
PPAT	5471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57262889	57262889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	57262889	G	A	57262889	3	1	434	1	0	0	0	0	1	0	0	0	12309	971	34	2	308	2	PPAT	4	57262889	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	12812547	57262889	133891387	32	24993											
TMEM144	55314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	159138552	159138552	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	-	159138552	A	-	159138552	7	5	434	1	0	1	0	1	0	0	0	0	16070	359	13	0	322	0	TMEM144	4	159138552	Frame_Shift_Del	DEL	A	TCGA-BQ-5875-01A-11D-1589-08	101875663	159138552	32015724	33	24994											
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	54429246	54429246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	54429246	C	A	54429246	3	1	434	1	0	0	0	0	1	0	0	0	3062	826	29	4	896	4	CDC20B	5	54429246	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		54429246	126486014	34	24995											
OTP	23440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	76932809	76932809	+	Missense_Mutation	SNP	G	G	C	rs148662448	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	76932809	G	C	76932809	3	2	434	1	0	0	0	0	1	0	0	0	11317	1203	42	4	701	4	OTP	5	76932809	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	22503563	76932809	103982451	35	24996											
AFF4	27125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132270292	132270292	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	132270292	T	G	132270292	2	3	434	1	0	0	0	0	0	0	0	1	359	1451	51	5		5	AFF4	5	132270292	Silent	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	55337483	132270292	48644968	36	24997											
DST	667	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	56480769	56480769	+	Missense_Mutation	SNP	C	C	T	rs148062292		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	56480769	C	T	56480769	3	4	434	1	0	0	0	0	1	0	0	0	4785	652	23	1	12903	1	DST	6	56480769	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		56480769	114634298	37	24998											
SEPT7	989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	35930341	35930341	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	-	35930341	A	-	35930341	7	5	434	1	0	1	0	1	0	0	0	0	14082	243	9	0	972	0	SEPT7	7	35930341	Frame_Shift_Del	DEL	A	TCGA-BQ-5875-01A-11D-1589-08		35930341	123208322	38	24999	315	2									
SEPT7	989	hgsc.bcm.edu;bcgsc.ca	37	7	35930344	35930344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	35930344	A	T	35930344	3	4	434	1	0	0	0	0	1	0	0	0	14082	40	2	5	975	5	SEPT7	7	35930344	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	3	35930344	123208319	39	25000	315	2									
CDK13	8621	broad.mit.edu	37	7	40134552	40134552	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	40134552	A	G	40134552	2	3	434	1	0	0	0	0	0	0	0	1	3131	301	11	3		3	CDK13	7	40134552	Silent	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	4204208	40134552	119004111	40	25001											
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	114299729	114299729	+	Splice_Site	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	114299729	G	A	114299729	5	1	434	1	0	0	0	0	0	0	1	0	6034	1275	44	2	1861	2	FOXP2	7	114299729	Splice_Site	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	74165177	114299729	44838934	41	25002											
NDUFB2	4708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140402766	140402766	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	140402766	T	A	140402766	3	1	434	1	0	0	0	0	1	0	0	0	10288	1725	60	5	205	5	NDUFB2	7	140402766	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	26103037	140402766	18735897	42	25003											
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	8234118	8234118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	8234118	C	A	8234118	3	1	434	1	0	0	0	0	1	0	0	0	14223	652	23	4	2423	4	SGK223	8	8234118	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		8234118	138129904	43	25004											
ZNF395	55893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28209093	28209093	+	Silent	SNP	C	C	A	rs145491469	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	28209093	C	A	28209093	2	1	434	1	0	0	0	0	0	0	0	1	17893	639	23	4		4	ZNF395	8	28209093	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	19974975	28209093	118154929	44	25005											
ZBTB10	65986	hgsc.bcm.edu	37	8	81399527	81399527	+	Missense_Mutation	SNP	T	T	G	rs185916023		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	81399527	T	G	81399527	3	3	434	1	0	0	0	0	1	0	0	0	17535	1696	59	5	484	5	ZBTB10	8	81399527	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	53190434	81399527	64964495	45	25006											
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144998457	144998457	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	144998457	C	T	144998457	2	4	434	1	0	0	0	0	0	0	0	1	12059	581	21	2		2	PLEC	8	144998457	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	63598930	144998457	1365565	46	25007											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79955424	79955424	+	Silent	SNP	T	T	A	rs144477984	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	79955424	T	A	79955424	2	1	434	1	0	0	0	0	0	0	0	1	17201	1567	55	5		5	VPS13A	9	79955424	Silent	SNP	T	TCGA-BQ-5875-01A-11D-1589-08		79955424	61258007	47	25008											
CDC14B	8555	bcgsc.ca	37	9	99296440	99296441	+	Splice_Site	INS	-	-	TACA	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	TACA	99296441	-	TACA	99296440	8	5	434	1	0	1	1	0	0	0	1	0	3059	695	24	0	805	0	CDC14B	9	99296440	Splice_Site	INS	-	TCGA-BQ-5875-01A-11D-1589-08	19341016	99296440	41916991	48	25009											
MUSK	4593	broad.mit.edu	37	9	113530177	113530177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	113530177	C	G	113530177	3	3	434	1	0	0	0	0	1	0	0	0	9996	797	28	4	1062	4	MUSK	9	113530177	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	14233737	113530177	27683254	49	25010											
TLL2	7093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98136535	98136535	+	Missense_Mutation	SNP	C	C	A	rs150738442	alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	98136535	C	A	98136535	3	1	434	1	0	0	0	0	1	0	0	0	15958	739	26	4	701	4	TLL2	10	98136535	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		98136535	37398212	50	25011											
GBF1	8729	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	104130546	104130546	+	Missense_Mutation	SNP	G	G	T	rs7894865	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	104130546	G	T	104130546	3	4	434	1	0	0	0	0	1	0	0	0	6278	1377	48	4	3696	4	GBF1	10	104130546	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	5994011	104130546	31404201	51	25012											
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104353417	104353417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	104353417	C	A	104353417	3	1	434	1	0	0	0	0	1	0	0	0	15380	796	28	4	640	4	SUFU	10	104353417	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	222871	104353417	31181330	52	25013											
POLR2L	5441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	840428	840428	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	840428	G	A	840428	2	1	434	1	0	0	0	0	0	0	0	1	12234	962	34	2		2	POLR2L	11	840428	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		840428	134166088	53	25014											
OR51A4	401666	broad.mit.edu	37	11	4967850	4967856	+	Frame_Shift_Del	DEL	AGGGAAG	AGGGAAG	-	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	AGGGAAG	AGGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	-	4967856	AGGGAAG	-	4967850	7	5	434	1	0	1	0	1	0	0	0	0	11094	72	3	0	462	0	OR51A4	11	4967850	Frame_Shift_Del	DEL	AGGGAAG	TCGA-BQ-5875-01A-11D-1589-08	4127422	4967850	130038666	54	25015											
OR51A2	401667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4976463	4976469	+	Frame_Shift_Del	DEL	AGGGAAG	AGGGAAG	-	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	AGGGAAG	AGGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	-	4976469	AGGGAAG	-	4976463	7	5	434	1	0	1	0	1	0	0	0	0	11093	72	3	0	462	0	OR51A2	11	4976463	Frame_Shift_Del	DEL	AGGGAAG	TCGA-BQ-5875-01A-11D-1589-08	8613	4976463	130030053	55	25016											
SAAL1	113174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18101957	18101957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	18101957	C	G	18101957	3	3	434	1	0	0	0	0	1	0	0	0	13814	507	18	4	14	4	SAAL1	11	18101957	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	13125494	18101957	116904559	56	25017											
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74979954	74979954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	74979954	C	T	74979954	3	4	434	1	0	0	0	0	1	0	0	0	980	922	32	2	196	2	ARRB1	11	74979954	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	56877997	74979954	60026562	57	25018											
GAB2	9846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	77934564	77934564	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	77934564	G	A	77934564	2	1	434	1	0	0	0	0	0	0	0	1	6156	1020	36	2		2	GAB2	11	77934564	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	2954610	77934564	57071952	58	25019											
CASP5	838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	104879534	104879534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	104879534	T	G	104879534	3	3	434	1	0	0	0	0	1	0	0	0	2676	1623	56	5	1155	5	CASP5	11	104879534	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	26944970	104879534	30126982	59	25020											
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	404935	404935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	404935	G	C	404935	3	2	434	1	0	0	0	0	1	0	0	0	8140	1000	35	4	825	4	KDM5A	12	404935	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		404935	133446960	60	25021											
AEBP2	121536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	19615463	19615463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	19615463	G	C	19615463	3	2	434	1	0	0	0	0	1	0	0	0	350	1174	41	4	697	4	AEBP2	12	19615463	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	19210528	19615463	114236432	61	25022											
PFKM	5213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48538849	48538849	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	48538849	C	A	48538849	2	1	434	1	0	0	0	0	0	0	0	1	11772	581	21	4		4	PFKM	12	48538849	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	28923386	48538849	85313046	62	25023											
NCKAP1L	3071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54903761	54903761	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	54903761	T	G	54903761	3	3	434	1	0	0	0	0	1	0	0	0	10229	1783	62	5	753	5	NCKAP1L	12	54903761	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	6364912	54903761	78948134	63	25024											
RFC5	5985	broad.mit.edu	37	12	118462710	118462710	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	118462710	C	A	118462710	4	1	434	1	0	0	0	0	0	1	0	0	13261	838	29	4	504	4	RFC5	12	118462710	Nonsense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	63558949	118462710	15389185	64	25025											
DCAF4	26094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73412735	73412735	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	73412735	G	A	73412735	2	1	434	1	0	0	0	0	0	0	0	1	4272	1014	35	2		2	DCAF4	14	73412735	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		73412735	33936805	65	25026											
ATXN3	4287	hgsc.bcm.edu	37	14	92537397	92537397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	92537397	T	C	92537397	3	2	434	1	0	0	0	0	1	0	0	0	1213	1681	58	3	220	3	ATXN3	14	92537397	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	19124662	92537397	14812143	66	25027											
GDE1	51573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19516303	19516303	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	19516303	A	C	19516303	3	2	434	1	0	0	0	0	1	0	0	0	6317	101	4	5	255	5	GDE1	16	19516303	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08		19516303	70838450	67	25028											
EEF2K	29904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	22237117	22237117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	22237117	C	T	22237117	3	4	434	1	0	0	0	0	1	0	0	0	4932	594	21	2	69	2	EEF2K	16	22237117	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	2720814	22237117	68117636	68	25029											
CX3CL1	6376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57413588	57413588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	57413588	A	G	57413588	3	3	434	1	0	0	0	0	1	0	0	0	4076	72	3	3	119	3	CX3CL1	16	57413588	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	35176471	57413588	32941165	69	25030											
SLC12A4	6560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67981315	67981315	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	G	67981315	C	G	67981315	3	3	434	1	0	0	0	0	1	0	0	0	14398	623	22	4	1302	4	SLC12A4	16	67981315	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	10567727	67981315	22373438	70	25031											
NFATC3	4775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68224719	68224719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	68224719	C	A	68224719	3	1	434	1	0	0	0	0	1	0	0	0	10371	594	21	4	2181	4	NFATC3	16	68224719	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	243404	68224719	22130034	71	25032											
CHMP1A	5119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89715819	89715819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	89715819	C	T	89715819	3	4	434	1	0	0	0	0	1	0	0	0	3354	855	30	2	566	2	CHMP1A	16	89715819	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	21491100	89715819	638934	72	25033											
CDK10	8558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89756963	89756963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	89756963	C	T	89756963	3	4	434	1	0	0	0	0	1	0	0	0	3127	875	31	1	173	1	CDK10	16	89756963	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	41144	89756963	597790	73	25034											
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7250507	7250507	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	7250507	G	A	7250507	4	1	434	1	0	0	0	0	0	1	0	0	118	1357	47	2	1343	2	ACAP1	17	7250507	Nonsense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		7250507	73944703	74	25035											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29162059	29162059	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	29162059	G	C	29162059	3	2	434	1	0	0	0	0	1	0	0	0	1076	933	33	4	966	4	ATAD5	17	29162059	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	21911552	29162059	52033151	75	25036											
LRRC37B	114659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30348539	30348539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	30348539	G	T	30348539	3	4	434	1	0	0	0	0	1	0	0	0	9001	1116	39	4	376	4	LRRC37B	17	30348539	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	1186480	30348539	50846671	76	25037											
KRTAP4-3	85290	hgsc.bcm.edu	37	17	39324228	39324228	+	Missense_Mutation	SNP	C	C	A	rs192418439		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	39324228	C	A	39324228	3	1	434	1	0	0	0	0	1	0	0	0	8559	681	24	4	394	4	KRTAP4-3	17	39324228	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	8975689	39324228	41870982	77	25038											
ABI3	51225	broad.mit.edu	37	17	47299547	47299547	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	47299547	T	C	47299547	2	2	434	1	0	0	0	0	0	0	0	1	90	1567	55	3		3	ABI3	17	47299547	Silent	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	7975319	47299547	33895663	78	25039											
MFSD11	79157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74772621	74772621	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	74772621	C	T	74772621	4	4	434	1	0	0	0	0	0	1	0	0	9536	827	29	2	1229	2	MFSD11	17	74772621	Nonsense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	27473074	74772621	6422589	79	25040											
RPTOR	57521	hgsc.bcm.edu	37	17	78858927	78858927	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	78858927	C	T	78858927	2	4	434	1	0	0	0	0	0	0	0	1	13678	535	19	1		1	RPTOR	17	78858927	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	4086306	78858927	2336283	80	25041											
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	40853823	40853823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	40853823	C	T	40853823	3	4	434	1	0	0	0	0	1	0	0	0	15488	826	29	2	718	2	SYT4	18	40853823	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		40853823	37223425	81	25042											
MRPL54	116541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3765208	3765208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	3765208	G	A	3765208	3	1	434	1	0	0	0	0	1	0	0	0	9825	1203	42	2	169	2	MRPL54	19	3765208	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		3765208	55363775	82	25043											
ANKLE1	126549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17396342	17396342	+	Silent	SNP	C	C	T	rs111432888		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	17396342	C	T	17396342	2	4	434	1	0	0	0	0	0	0	0	1	632	610	22	2		2	ANKLE1	19	17396342	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	13631134	17396342	41732641	83	25044											
ZNF30	90075	broad.mit.edu;bcgsc.ca	37	19	35434608	35434608	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	-	35434608	G	-	35434608	7	5	434	1	0	1	0	1	0	0	0	0	17842	962	34	0	755	0	ZNF30	19	35434608	Frame_Shift_Del	DEL	G	TCGA-BQ-5875-01A-11D-1589-08	18038266	35434608	23694375	84	25045											
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36831787	36831787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	36831787	C	T	36831787	3	4	434	1	0	0	0	0	1	0	0	0	17651	478	17	2	664	2	ZFP14	19	36831787	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	1397179	36831787	22297196	85	25046											
ZNF225	7768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44635911	44635911	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	44635911	A	C	44635911	2	2	434	1	0	0	0	0	0	0	0	1	17791	180	7	5		5	ZNF225	19	44635911	Silent	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	7804124	44635911	14493072	86	25047											
ZNF547	284306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57888699	57888699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	57888699	G	A	57888699	3	1	434	1	0	0	0	0	1	0	0	0	17991	971	34	2	365	2	ZNF547	19	57888699	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	13252788	57888699	1240284	87	25048											
NINL	22981	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25457543	25457543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	25457543	C	T	25457543	3	4	434	1	0	0	0	0	1	0	0	0	10427	768	27	1	1796	1	NINL	20	25457543	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		25457543	37567977	88	25049											
UMODL1	89766	broad.mit.edu	37	21	43529716	43529716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	43529716	G	A	43529716	3	1	434	1	0	0	0	0	1	0	0	0	16992	1203	42	2	1602	2	UMODL1	21	43529716	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		43529716	4600179	89	25050											
ITGB2	3689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46306670	46306670	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	C	46306670	A	C	46306670	3	2	434	1	0	0	0	0	1	0	0	0	7901	304	11	5	89	5	ITGB2	21	46306670	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	2776954	46306670	1823225	90	25051											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30038223	30038223	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	A	30038223	C	A	30038223	4	1	434	1	0	0	0	0	0	1	0	0	10364	576	20	4	410	4	NF2	22	30038223	Nonsense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		30038223	21266343	91	25052											
SLC9A7	84679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	46491075	46491075	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	46491075	A	T	46491075	2	4	434	1	0	0	0	0	0	0	0	1	14732	117	5	5		5	SLC9A7	23	46491075	Silent	SNP	A	TCGA-BQ-5875-01A-11D-1589-08		46491075	108779485	92	25053											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu	37	X	53564649	53564649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	53564649	C	T	53564649	3	4	434	1	0	0	0	0	1	0	0	0	7468	768	27	1	1147	1	HUWE1	23	53564649	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	7073574	53564649	101705911	93	25054											
POU3F4	5456	hgsc.bcm.edu	37	X	82764046	82764046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	82764046	G	T	82764046	3	4	434	1	0	0	0	0	1	0	0	0	12284	1310	46	4	716	4	POU3F4	23	82764046	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	29199397	82764046	72506514	94	25055											
NXF3	56000	broad.mit.edu	37	X	102332664	102332664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	T	102332664	C	T	102332664	3	4	434	1	0	0	0	0	1	0	0	0	10792	536	19	1	141	1	NXF3	23	102332664	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	19568618	102332664	52937896	95	25056											
MCTS1	28985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119739292	119739293	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	AT	119739293	-	AT	119739292	7	5	434	1	0	1	1	0	0	0	0	0	9409	718	25	0	66	0	MCTS1	23	119739292	Frame_Shift_Ins	INS	-	TCGA-BQ-5875-01A-11D-1589-08	17406628	119739292	35531268	96	25057	316	2									
MCTS1	28985	hgsc.bcm.edu	37	X	119739295	119739296	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	-	119739296	CC	-	119739295	7	5	434	1	0	1	0	1	0	0	0	0	9409	845	30	0	69	0	MCTS1	23	119739295	Frame_Shift_Del	DEL	CC	TCGA-BQ-5875-01A-11D-1589-08	3	119739295	35531265	97	25058	316	2									
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	123184115	123184118	+	Frame_Shift_Del	DEL	AATG	AATG	-	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	AATG	AATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	-	123184118	AATG	-	123184115	7	5	434	1	0	1	0	1	0	0	0	0	15255	362	13	0	1007	0	STAG2	23	123184115	Frame_Shift_Del	DEL	AATG	TCGA-BQ-5875-01A-11D-1589-08	3444820	123184115	32086445	98	25059											
PLCH2	9651	ucsc.edu;bcgsc.ca	37	1	2415964	2415964	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	2415964	C	T	2415964	2	4	435	1	0	0	0	0	0	0	0	1	12045	726	26	2		2	PLCH2	1	2415964	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		2415964	246834657	1	25060											
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12327038	12327038	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	12327038	T	C	12327038	2	2	435	1	0	0	0	0	0	0	0	1	17204	1509	53	3		3	VPS13D	1	12327038	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	9911074	12327038	236923583	2	25061											
MTF1	4520	broad.mit.edu	37	1	38323066	38323066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	38323066	T	C	38323066	3	2	435	1	0	0	0	0	1	0	0	0	9929	1493	52	3	2036	3	MTF1	1	38323066	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	25996028	38323066	210927555	3	25062											
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44058242	44058242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	44058242	C	G	44058242	3	3	435	1	0	0	0	0	1	0	0	0	12814	623	22	4	1817	4	PTPRF	1	44058242	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	5735176	44058242	205192379	4	25063											
POMGNT1	55624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46654508	46654508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	46654508	G	T	46654508	3	4	435	1	0	0	0	0	1	0	0	0	12250	1276	44	4		4	POMGNT1	1	46654508	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	2596266	46654508	202596113	5	25064											
FAM73A	374986	bcgsc.ca	37	1	78325733	78325733	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	78325733	T	C	78325733	2	2	435	1	0	0	0	0	0	0	0	1	5624	1828	64	3		3	FAM73A	1	78325733	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	31671225	78325733	170924888	6	25065											
C1orf52	148423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85725088	85725088	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	85725088	T	G	85725088	3	3	435	1	0	0	0	0	1	0	0	0	2046	1812	63	5	331	5	C1orf52	1	85725088	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	7399355	85725088	163525533	7	25066											
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90399406	90399406	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	90399406	A	T	90399406	3	4	435	1	0	0	0	0	1	0	0	0	9031	14	1	5	781	5	LRRC8D	1	90399406	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	4674318	90399406	158851215	8	25067											
DNTTIP2	30836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94342829	94342829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	94342829	A	C	94342829	3	2	435	1	0	0	0	0	1	0	0	0	4684	101	4	5	1632	5	DNTTIP2	1	94342829	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	3943423	94342829	154907792	9	25068											
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100572514	100572514	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	100572514	A	C	100572514	2	2	435	1	0	0	0	0	0	0	0	1	13863	349	13	5		5	SASS6	1	100572514	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	6229685	100572514	148678107	10	25069											
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150679129	150679129	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	150679129	T	A	150679129	3	1	435	1	0	0	0	0	1	0	0	0	7293	1493	52	5	504	5	HORMAD1	1	150679129	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	50106615	150679129	98571492	11	25070											
RAB13	5872	hgsc.bcm.edu	37	1	153954883	153954921	+	Frame_Shift_Del	DEL	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	-	153954921	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	-	153954883	7	5	435	1	0	1	0	1	0	0	0	0	12912	1294	45	0	101	0	RAB13	1	153954883	Frame_Shift_Del	DEL	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	TCGA-BQ-5876-01A-11D-1589-08	3275754	153954883	95295738	12	25071											
DARC	2532	ucsc.edu;bcgsc.ca	37	1	159176128	159176128	+	Missense_Mutation	SNP	C	C	A	rs1801482		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	159176128	C	A	159176128	3	1	435	1	0	0	0	0	1	0	0	0	4242	536	19	4	932	4	DARC	1	159176128	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	5221245	159176128	90074493	13	25072											
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161019045	161019045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	161019045	C	T	161019045	3	4	435	1	0	0	0	0	1	0	0	0	879	478	17	2	1543	2	ARHGAP30	1	161019045	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	1842917	161019045	88231576	14	25073											
CREG1	8804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167515357	167515357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	167515357	A	G	167515357	3	3	435	1	0	0	0	0	1	0	0	0	3866	449	16	3	30	3	CREG1	1	167515357	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	6496312	167515357	81735264	15	25074											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	185984290	185984290	+	Splice_Site	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	185984290	G	A	185984290	5	1	435	1	0	0	0	0	0	0	1	0	7227	1043	36	2	4752	2	HMCN1	1	185984290	Splice_Site	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	18468933	185984290	63266331	16	25075											
PLEKHA6	22874	broad.mit.edu;ucsc.edu	37	1	204199641	204199641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	204199641	A	G	204199641	3	3	435	1	0	0	0	0	1	0	0	0	12067	217	8	3	683	3	PLEKHA6	1	204199641	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	18215351	204199641	45050980	17	25076											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	9533671	9533671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	9533671	T	C	9533671	3	2	435	1	0	0	0	0	1	0	0	0	1011	1821	63	3	2673	3	ASAP2	2	9533671	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		9533671	233665702	18	25077											
NRBP1	29959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27664588	27664588	+	Missense_Mutation	SNP	G	G	A	rs141700147		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	27664588	G	A	27664588	3	1	435	1	0	0	0	0	1	0	0	0	10649	1116	39	1	1583	1	NRBP1	2	27664588	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	18130917	27664588	215534785	19	25078											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu	37	2	32693046	32693046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	32693046	T	C	32693046	3	2	435	1	0	0	0	0	1	0	0	0	1438	1522	53	3	5757	3	BIRC6	2	32693046	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	5028458	32693046	210506327	20	25079											
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	40656328	40656328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	40656328	G	T	40656328	3	4	435	1	0	0	0	0	1	0	0	0	14719	1058	37	4	1976	4	SLC8A1	2	40656328	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	7963282	40656328	202543045	21	25080											
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48027125	48027125	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	48027125	C	G	48027125	3	3	435	1	0	0	0	0	1	0	0	0	9881	855	30	4	2017	4	MSH6	2	48027125	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	7370797	48027125	195172248	22	25081											
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55566741	55566741	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	55566741	T	G	55566741	2	3	435	1	0	0	0	0	0	0	0	1	2865	1799	63	5		5	CCDC88A	2	55566741	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	7539616	55566741	187632632	23	25082											
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85536242	85536242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	85536242	T	C	85536242	3	2	435	1	0	0	0	0	1	0	0	0	15709	1464	51	3	1470	3	TCF7L1	2	85536242	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	29969501	85536242	157663131	24	25083											
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	100015354	100015354	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	100015354	A	C	100015354	2	2	435	1	0	0	0	0	0	0	0	1	5046	175	7	5		5	EIF5B	2	100015354	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	14479112	100015354	143184019	25	25084											
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128484249	128484249	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	-	128484249	T	-	128484249	7	5	435	1	0	1	0	1	0	0	0	0	17299	1609	56	0	3243	0	WDR33	2	128484249	Frame_Shift_Del	DEL	T	TCGA-BQ-5876-01A-11D-1589-08	28468895	128484249	114715124	26	25085											
CXCR4	7852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136873381	136873381	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	136873381	G	T	136873381	2	4	435	1	0	0	0	0	0	0	0	1	4095	932	33	4		4	CXCR4	2	136873381	Silent	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	8389132	136873381	106325992	27	25086											
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179585887	179585887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	179585887	G	A	179585887	3	1	435	1	0	0	0	0	1	0	0	0	16747	1319	46	2	81806	2	TTN	2	179585887	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	42712506	179585887	63613486	28	25087											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196749321	196749321	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	196749321	T	C	196749321	2	2	435	1	0	0	0	0	0	0	0	1	4608	1490	52	3		3	DNAH7	2	196749321	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	17163434	196749321	46450052	29	25088											
GTF3C3	9330	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197636546	197636546	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	197636546	T	G	197636546	3	3	435	1	0	0	0	0	1	0	0	0	6881	1725	60	5	490	5	GTF3C3	2	197636546	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	887225	197636546	45562827	30	25089											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	212426810	212426810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	212426810	C	A	212426810	3	1	435	1	0	0	0	0	1	0	0	0	5211	797	28	4	1657	4	ERBB4	2	212426810	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	14790264	212426810	30772563	31	25090											
UBP1	7342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33434887	33434887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	33434887	G	C	33434887	3	2	435	1	0	0	0	0	1	0	0	0	16907	962	34	4	184	4	UBP1	3	33434887	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		33434887	164587543	32	25091											
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47125642	47125643	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	47125643	-	A	47125642	7	5	435	1	0	1	1	0	0	0	0	0	14144	1741	61	0	2106	0	SETD2	3	47125642	Frame_Shift_Ins	INS	-	TCGA-BQ-5876-01A-11D-1589-08	13690755	47125642	150896788	33	25092											
POLQ	10721	broad.mit.edu	37	3	121207671	121207673	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	-	121207673	CTT	-	121207671	7	5	435	1	0	1	0	1	0	0	0	0	12215	680	24	0	3725	0	POLQ	3	121207671	In_Frame_Del	DEL	CTT	TCGA-BQ-5876-01A-11D-1589-08	74082029	121207671	76814759	34	25093											
FBXO45	200933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196304554	196304554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	196304554	A	T	196304554	3	4	435	1	0	0	0	0	1	0	0	0	5761	69	3	5	555	5	FBXO45	3	196304554	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	75096883	196304554	1717876	35	25094											
YTHDC1	91746	hgsc.bcm.edu	37	4	69202908	69202908	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	69202908	C	T	69202908	2	4	435	1	0	0	0	0	0	0	0	1	17508	680	24	2		2	YTHDC1	4	69202908	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		69202908	121951368	36	25095											
MFAP3L	9848	bcgsc.ca	37	4	170913237	170913237	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	170913237	C	G	170913237	3	3	435	1	0	0	0	0	1	0	0	0	9523	826	29	4	711	4	MFAP3L	4	170913237	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	101710329	170913237	20241039	37	25096											
TRIO	7204	broad.mit.edu	37	5	14381318	14381318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	14381318	A	G	14381318	3	3	435	1	0	0	0	0	1	0	0	0	16564	188	7	3	3609	3	TRIO	5	14381318	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08		14381318	166533942	38	25097											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16764479	16764479	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	16764479	G	T	16764479	2	4	435	1	0	0	0	0	0	0	0	1	10069	1335	47	4		4	MYO10	5	16764479	Silent	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	2383161	16764479	164150781	39	25098											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33561191	33561191	+	Missense_Mutation	SNP	G	G	C	rs183308563		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	33561191	G	C	33561191	3	2	435	1	0	0	0	0	1	0	0	0	257	1232	43	4	738	4	ADAMTS12	5	33561191	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	16796712	33561191	147354069	40	25099											
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	35771741	35771743	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	-	35771743	GAA	-	35771741	7	5	435	1	0	1	0	1	0	0	0	0	15047	1175	41	0	3959	0	SPEF2	5	35771741	In_Frame_Del	DEL	GAA	TCGA-BQ-5876-01A-11D-1589-08	2210550	35771741	145143519	41	25100											
PARP8	79668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	50137860	50137860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	50137860	A	T	50137860	3	4	435	1	0	0	0	0	1	0	0	0	11472	69	3	5	2625	5	PARP8	5	50137860	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	14366119	50137860	130777400	42	25101											
VCAN	1462	broad.mit.edu	37	5	82835856	82835856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	82835856	C	A	82835856	3	1	435	1	0	0	0	0	1	0	0	0	17150	536	19	4	7060	4	VCAN	5	82835856	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	32697996	82835856	98079404	43	25102											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89989974	89989974	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	89989974	A	T	89989974	2	4	435	1	0	0	0	0	0	0	0	1	6728	204	8	5		5	GPR98	5	89989974	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	7154118	89989974	90925286	44	25103											
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140865325	140865325	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	140865325	C	G	140865325	2	3	435	1	0	0	0	0	0	0	0	1	11577	842	30	4		4	PCDHGC4	5	140865325	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	50875351	140865325	40049935	45	25104											
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	180661231	180661232	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	180661232	-	C	180661231	7	5	435	1	0	1	1	0	0	0	0	0	16528	1087	38	0	1371	0	TRIM41	5	180661231	Frame_Shift_Ins	INS	-	TCGA-BQ-5876-01A-11D-1589-08	39795906	180661231	254029	46	25105											
RANBP9	10048	broad.mit.edu;bcgsc.ca	37	6	13622632	13622632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	13622632	A	G	13622632	3	3	435	1	0	0	0	0	1	0	0	0	13045	333	12	3	41	3	RANBP9	6	13622632	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08		13622632	157492435	47	25106											
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43275360	43275360	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	43275360	T	C	43275360	2	2	435	1	0	0	0	0	0	0	0	1	3878	1606	56	3		3	CRIP3	6	43275360	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	29652728	43275360	127839707	48	25107											
OGFRL1	79627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	72011098	72011098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	72011098	C	A	72011098	3	1	435	1	0	0	0	0	1	0	0	0	10851	477	17	4	728	4	OGFRL1	6	72011098	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	28735738	72011098	99103969	49	25108											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152658075	152658075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	152658075	C	G	152658075	3	3	435	1	0	0	0	0	1	0	0	0	15457	856	30	4	14321	4	SYNE1	6	152658075	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	80646977	152658075	18456992	50	25109											
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5781025	5781025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	5781025	A	G	5781025	3	3	435	1	0	0	0	0	1	0	0	0	13493	188	7	3	2204	3	RNF216	7	5781025	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08		5781025	153357638	51	25110											
POMZP3	22932	hgsc.bcm.edu	37	7	76241120	76241120	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	76241120	G	C	76241120	3	2	435	1	0	0	0	0	1	0	0	0	12254	1261	44	4	222	4	POMZP3	7	76241120	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	70460095	76241120	82897543	52	25111											
CPA5	93979	broad.mit.edu	37	7	129987643	129987643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	129987643	G	T	129987643	3	4	435	1	0	0	0	0	1	0	0	0	3795	962	34	4	159	4	CPA5	7	129987643	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	53746523	129987643	29151020	53	25112											
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143826220	143826220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	143826220	G	T	143826220	3	4	435	1	0	0	0	0	1	0	0	0	10983	933	33	4	17	4	OR2A14	7	143826220	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	13838577	143826220	15312443	54	25113											
FGFR1	2260	broad.mit.edu	37	8	38314950	38314950	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	38314950	C	T	38314950	2	4	435	1	0	0	0	0	0	0	0	1	5870	564	20	2		2	FGFR1	8	38314950	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		38314950	108049072	55	25114											
IFNA2	3440	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	21385064	21385067	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	-	21385067	GATT	-	21385064	7	5	435	1	0	1	0	1	0	0	0	0	7544	942	33	0	305	0	IFNA2	9	21385064	Frame_Shift_Del	DEL	GATT	TCGA-BQ-5876-01A-11D-1589-08		21385064	119828367	56	25115											
ENTPD7	57089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101460770	101460770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	101460770	T	G	101460770	3	3	435	1	0	0	0	0	1	0	0	0	5146	1783	62	5	1414	5	ENTPD7	10	101460770	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		101460770	34073977	57	25116											
OR56A5	390084	broad.mit.edu;ucsc.edu	37	11	5989644	5989644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	5989644	C	A	5989644	3	1	435	1	0	0	0	0	1	0	0	0	11143	796	28	4	862	4	OR56A5	11	5989644	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		5989644	129016872	58	25117											
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47711964	47711964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	47711964	T	G	47711964	3	3	435	1	0	0	0	0	1	0	0	0	376	1493	52	5	1453	5	AGBL2	11	47711964	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	41722320	47711964	87294552	59	25118											
TMEM132A	54972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	60696113	60696113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	60696113	G	C	60696113	3	2	435	1	0	0	0	0	1	0	0	0	16057	1087	38	4	561	4	TMEM132A	11	60696113	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	12984149	60696113	74310403	60	25119											
CCDC88B	283234	broad.mit.edu	37	11	64111815	64111815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	64111815	C	A	64111815	3	1	435	1	0	0	0	0	1	0	0	0	2866	681	24	4	1856	4	CCDC88B	11	64111815	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	3415702	64111815	70894701	61	25120											
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65113198	65113198	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	65113198	G	A	65113198	2	1	435	1	0	0	0	0	0	0	0	1	4719	1339	47	2		2	DPF2	11	65113198	Silent	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	1001383	65113198	69893318	62	25121											
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66468283	66468283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	66468283	G	T	66468283	3	4	435	1	0	0	0	0	1	0	0	0	15132	1261	44	4	3973	4	SPTBN2	11	66468283	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	1355085	66468283	68538233	63	25122											
LRP5	4041	hgsc.bcm.edu	37	11	68125147	68125147	+	Missense_Mutation	SNP	C	C	G	rs80358306	byfrequency;alternate_allele	TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	68125147	C	G	68125147	3	3	435	1	0	0	0	0	1	0	0	0	8967	536	19	4	528	4	LRP5	11	68125147	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	1656864	68125147	66881369	64	25123											
RSF1	51773	ucsc.edu	37	11	77412780	77412780	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	77412780	T	C	77412780	2	2	435	1	0	0	0	0	0	0	0	1	13712	1838	64	3		3	RSF1	11	77412780	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	9287633	77412780	57593736	65	25124											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877600	82877600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	82877600	A	G	82877600	3	3	435	1	0	0	0	0	1	0	0	0	11580	333	12	3	1679	3	PCF11	11	82877600	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	5464820	82877600	52128916	66	25125											
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	130785820	130785820	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	130785820	T	A	130785820	2	1	435	1	0	0	0	0	0	0	0	1	14903	1567	55	5		5	SNX19	11	130785820	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	47908220	130785820	4220696	67	25126											
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7045767	7045767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	7045767	C	A	7045767	3	1	435	1	0	0	0	0	1	0	0	0	1111	681	24	4	1351	4	ATN1	12	7045767	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		7045767	126806128	68	25127											
AEBP2	121536	hgsc.bcm.edu	37	12	19665400	19665400	+	Splice_Site	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	19665400	G	C	19665400	5	2	435	1	0	0	0	0	0	0	1	0	350	1391	48	4	1390	4	AEBP2	12	19665400	Splice_Site	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	12619633	19665400	114186495	69	25128											
NAB2	4665	hgsc.bcm.edu	37	12	57487273	57487273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	57487273	A	G	57487273	3	3	435	1	0	0	0	0	1	0	0	0	10139	217	8	3	1382	3	NAB2	12	57487273	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	37821873	57487273	76364622	70	25129											
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123479959	123479959	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	123479959	C	T	123479959	2	4	435	1	0	0	0	0	0	0	0	1	11958	796	28	2		2	PITPNM2	12	123479959	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	65992686	123479959	10371936	71	25130											
PYGL	5836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51387749	51387749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	51387749	C	T	51387749	3	4	435	1	0	0	0	0	1	0	0	0	12874	652	23	1	1906	1	PYGL	14	51387749	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		51387749	55961791	72	25131											
TTC7B	145567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91161893	91161893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	91161893	C	G	91161893	3	3	435	1	0	0	0	0	1	0	0	0	16725	913	32	4	1863	4	TTC7B	14	91161893	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	39774144	91161893	16187647	73	25132											
TYRO3	7301	hgsc.bcm.edu	37	15	41854918	41854918	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	41854918	T	G	41854918	5	3	435	1	0	0	0	0	0	0	1	0	16826	1710	59	5	596	5	TYRO3	15	41854918	Splice_Site	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		41854918	60676474	74	25133											
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42105966	42105966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	42105966	G	A	42105966	3	1	435	1	0	0	0	0	1	0	0	0	9299	1145	40	1	1019	1	MAPKBP1	15	42105966	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	251048	42105966	60425426	75	25134											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51289917	51289917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	51289917	T	A	51289917	3	1	435	1	0	0	0	0	1	0	0	0	752	1406	49	5	2811	5	AP4E1	15	51289917	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	9183951	51289917	51241475	76	25135											
PIAS1	8554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68479999	68479999	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	68479999	T	C	68479999	2	2	435	1	0	0	0	0	0	0	0	1	11882	1693	59	3		3	PIAS1	15	68479999	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	17190082	68479999	34051393	77	25136											
ZNF688	146542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30581595	30581595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	30581595	G	A	30581595	3	1	435	1	0	0	0	0	1	0	0	0	18105	1203	42	2	361	2	ZNF688	16	30581595	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		30581595	59773158	78	25137											
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53708941	53708941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	53708941	A	C	53708941	3	2	435	1	0	0	0	0	1	0	0	0	13563	242	9	5	3161	5	RPGRIP1L	16	53708941	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	23127346	53708941	36645812	79	25138											
SLC16A13	201232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6942204	6942204	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	6942204	C	G	6942204	2	3	435	1	0	0	0	0	0	0	0	1	14419	900	32	4		4	SLC16A13	17	6942204	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		6942204	74253006	80	25139											
CHRNB1	1140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7357711	7357711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	7357711	C	G	7357711	3	3	435	1	0	0	0	0	1	0	0	0	3392	507	18	4	946	4	CHRNB1	17	7357711	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	415507	7357711	73837499	81	25140											
SHBG	6462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7536218	7536218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	7536218	C	A	7536218	3	1	435	1	0	0	0	0	1	0	0	0	14282	797	28	4	1027	4	SHBG	17	7536218	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	178507	7536218	73658992	82	25141											
ALOXE3	59344	broad.mit.edu	37	17	8018295	8018295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	8018295	G	A	8018295	3	1	435	1	0	0	0	0	1	0	0	0	542	1203	42	2	1668	2	ALOXE3	17	8018295	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	482077	8018295	73176915	83	25142											
SLC6A4	6532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28543164	28543164	+	Missense_Mutation	SNP	G	G	T	rs200924626		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	28543164	G	T	28543164	3	4	435	1	0	0	0	0	1	0	0	0	14699	1000	35	4	1020	4	SLC6A4	17	28543164	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	20524869	28543164	52652046	84	25143											
SPATA20	64847	broad.mit.edu	37	17	48627419	48627419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	48627419	G	A	48627419	3	1	435	1	0	0	0	0	1	0	0	0	15018	1348	47	2	966	2	SPATA20	17	48627419	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	20084255	48627419	32567791	85	25144											
HDHD2	84064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44639349	44639349	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	44639349	A	T	44639349	2	4	435	1	0	0	0	0	0	0	0	1	7030	202	7	5		5	HDHD2	18	44639349	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08		44639349	33437899	86	25145											
GRIN3B	116444	bcgsc.ca	37	19	1004657	1004657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	1004657	T	C	1004657	3	2	435	1	0	0	0	0	1	0	0	0	6791	1696	59	3	1167	3	GRIN3B	19	1004657	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		1004657	58124326	87	25146											
REXO1	57455	broad.mit.edu	37	19	1821535	1821535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	1821535	G	A	1821535	3	1	435	1	0	0	0	0	1	0	0	0	13254	1348	47	2	1336	2	REXO1	19	1821535	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	816878	1821535	57307448	88	25147											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9083127	9083127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	9083127	C	A	9083127	3	1	435	1	0	0	0	0	1	0	0	0	9980	680	24	4	35171	4	MUC16	19	9083127	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	7261592	9083127	50045856	89	25148											
CACNA1A	773	broad.mit.edu	37	19	13338336	13338336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	13338336	C	T	13338336	3	4	435	1	0	0	0	0	1	0	0	0	2540	768	27	1	2030	1	CACNA1A	19	13338336	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	4255209	13338336	45790647	90	25149											
IRF2BP1	26145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46387423	46387423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	46387423	G	A	46387423	3	1	435	1	0	0	0	0	1	0	0	0	7836	1087	38	1	148	1	IRF2BP1	19	46387423	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	33049087	46387423	12741560	91	25150											
SLC6A16	28968	broad.mit.edu	37	19	49793532	49793532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	49793532	G	T	49793532	3	4	435	1	0	0	0	0	1	0	0	0	14692	1174	41	4	155	4	SLC6A16	19	49793532	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	3406109	49793532	9335451	92	25151											
FAM71E1	112703	hgsc.bcm.edu;broad.mit.edu	37	19	50970929	50970929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	50970929	G	A	50970929	3	1	435	1	0	0	0	0	1	0	0	0	5618	1116	39	1	50	1	FAM71E1	19	50970929	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	1177397	50970929	8158054	93	25152											
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57066282	57066282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	57066282	T	C	57066282	3	2	435	1	0	0	0	0	1	0	0	0	17654	1609	56	3	2158	3	ZFP28	19	57066282	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	6095353	57066282	2062701	94	25153			1	46		2	2	17	N	T_C	5.426784e-05
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57066298	57066298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	57066298	C	A	57066298	3	1	435	1	0	0	0	0	1	0	0	0	17654	855	30	4	2174	4	ZFP28	19	57066298	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	16	57066298	2062685	95	25154			1	46		2	2	17	N	T_C	5.426784e-05
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33329544	33329544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	33329544	T	C	33329544	3	2	435	1	0	0	0	0	1	0	0	0	10240	1763	61	3	1695	3	NCOA6	20	33329544	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		33329544	29695976	96	25155											
KCNK15	60598	hgsc.bcm.edu	37	20	43379383	43379383	+	Missense_Mutation	SNP	C	C	G	rs199821276		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	43379383	C	G	43379383	3	3	435	1	0	0	0	0	1	0	0	0	8069	776	27	4	903	4	KCNK15	20	43379383	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	10049839	43379383	19646137	97	25156											
SLC5A3	6526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35468362	35468362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	35468362	G	A	35468362	3	1	435	1	0	0	0	0	1	0	0	0	14679	971	34	2	867	2	SLC5A3	21	35468362	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		35468362	12661533	98	25157											
POTEH	23784	hgsc.bcm.edu;bcgsc.ca	37	22	16287580	16287580	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	T	16287580	G	T	16287580	4	4	435	1	0	0	0	0	0	1	0	0	12274	963	34	4	1371	4	POTEH	22	16287580	Nonsense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		16287580	35016986	99	25158											
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24167461	24167461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	-	24167461	A	-	24167461	7	5	435	1	0	1	0	1	0	0	0	0	14787	275	10	0	871	0	SMARCB1	22	24167461	Frame_Shift_Del	DEL	A	TCGA-BQ-5876-01A-11D-1589-08	7879881	24167461	27137105	100	25159											
CENPM	79019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42342456	42342456	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	42342456	C	G	42342456	2	3	435	1	0	0	0	0	0	0	0	1	3239	871	31	4		4	CENPM	22	42342456	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	18174995	42342456	8962110	101	25160											
ZXDB	158586	hgsc.bcm.edu	37	X	57618703	57618703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	57618703	G	C	57618703	3	2	435	1	0	0	0	0	1	0	0	0	18263	1339	47	4	224	4	ZXDB	23	57618703	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		57618703	97651857	102	25161											
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70643918	70643918	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	C	70643918	T	C	70643918	5	2	435	1	0	0	0	0	0	0	1	0	15525	1710	59	3	4852	3	TAF1	23	70643918	Splice_Site	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	13025215	70643918	84626642	103	25162											
RLIM	51132	hgsc.bcm.edu	37	X	73811737	73811737	+	Silent	SNP	T	T	A	rs113198776		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	A	73811737	T	A	73811737	2	1	435	1	0	0	0	0	0	0	0	1	13403	1799	63	5		5	RLIM	23	73811737	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	3167819	73811737	81458823	104	25163	317	2									
RLIM	51132	hgsc.bcm.edu	37	X	73811739	73811739	+	Missense_Mutation	SNP	A	A	G	rs201164156		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	73811739	A	G	73811739	3	3	435	1	0	0	0	0	1	0	0	0	13403	246	9	3	467	3	RLIM	23	73811739	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	2	73811739	81458821	105	25164	317	2									
CXorf48	54967	hgsc.bcm.edu	37	X	134303602	134303602	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	G	134303602	A	G	134303602	2	3	435	1	0	0	0	0	0	0	0	1	4113	175	7	3		3	CXorf48	23	134303602	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	60491863	134303602	20966958	106	25165											
CTRC	11330	hgsc.bcm.edu	37	1	15766798	15766798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	15766798	T	C	15766798	3	2	436	1	0	0	0	0	1	0	0	0	4029	1551	54	3	49	3	CTRC	1	15766798	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		15766798	233483823	1	25166											
YBX1	4904	hgsc.bcm.edu	37	1	43166460	43166460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	43166460	C	T	43166460	3	4	436	1	0	0	0	0	1	0	0	0	17481	681	24	2	775	2	YBX1	1	43166460	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	27399662	43166460	206084161	2	25167											
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156628454	156628454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	156628454	C	A	156628454	3	1	436	1	0	0	0	0	1	0	0	0	1345	912	32	4	2677	4	BCAN	1	156628454	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	113461994	156628454	92622167	3	25168											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186072770	186072770	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	186072770	A	G	186072770	2	3	436	1	0	0	0	0	0	0	0	1	7227	291	11	3		3	HMCN1	1	186072770	Silent	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	29444316	186072770	63177851	4	25169											
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200974516	200974517	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	200974517	TC	-	200974516	7	5	436	1	0	1	0	1	0	0	0	0	8296	1435	50	0	4342	0	KIF21B	1	200974516	Frame_Shift_Del	DEL	TC	TCGA-BQ-5877-01A-11D-1589-08	14901746	200974516	48276105	5	25170											
TMEM206	55248	hgsc.bcm.edu	37	1	212588063	212588064	+	Splice_Site	INS	-	-	CTCCTGGTAGGATGTGGAGCG	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	CTCCTGGTAGGATGTGGAGCG	212588064	-	CTCCTGGTAGGATGTGGAGCG	212588063	8	5	436	1	0	1	1	0	0	0	1	0	16143	521	18	0	1047	0	TMEM206	1	212588063	Splice_Site	INS	-	TCGA-BQ-5877-01A-11D-1589-08	11613547	212588063	36662558	6	25171											
TRIM17	51127	ucsc.edu;bcgsc.ca	37	1	228596833	228596833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	228596833	G	T	228596833	3	4	436	1	0	0	0	0	1	0	0	0	16505	942	33	4	667	4	TRIM17	1	228596833	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	16008770	228596833	20653788	7	25172											
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	231472695	231472695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	231472695	T	A	231472695	3	1	436	1	0	0	0	0	1	0	0	0	5313	1493	52	5	1384	5	EXOC8	1	231472695	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	2875862	231472695	17777926	8	25173											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15542368	15542368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	15542368	T	G	15542368	3	3	436	1	0	0	0	0	1	0	0	0	10193	1464	51	5	4228	5	NBAS	2	15542368	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		15542368	227657005	9	25174											
CENPA	1058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27016052	27016052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	27016052	T	C	27016052	3	2	436	1	0	0	0	0	1	0	0	0	3228	1522	53	3	342	3	CENPA	2	27016052	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	11473684	27016052	216183321	10	25175											
SLC5A6	8884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27427450	27427450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	27427450	T	C	27427450	3	2	436	1	0	0	0	0	1	0	0	0	14682	1406	49	3	1059	3	SLC5A6	2	27427450	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	411398	27427450	215771923	11	25176											
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33036148	33036148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	33036148	G	A	33036148	3	1	436	1	0	0	0	0	1	0	0	0	16707	1377	48	2	2122	2	TTC27	2	33036148	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	5608698	33036148	210163225	12	25177											
THUMPD2	80745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	39983057	39983058	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	39983058	-	T	39983057	7	5	436	1	0	1	1	0	0	0	0	0	15895	449	16	0	592	0	THUMPD2	2	39983057	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08	6946909	39983057	203216316	13	25178											
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54125075	54125075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	54125075	C	G	54125075	3	3	436	1	0	0	0	0	1	0	0	0	12719	565	20	4	2057	4	PSME4	2	54125075	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	14142018	54125075	189074298	14	25179											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109392304	109392304	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	109392304	T	C	109392304	2	2	436	1	0	0	0	0	0	0	0	1	13041	1742	61	3		3	RANBP2	2	109392304	Silent	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	55267229	109392304	133807069	15	25180											
TMEM87B	84910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	112863589	112863589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	112863589	A	G	112863589	3	3	436	1	0	0	0	0	1	0	0	0	16223	352	13	3	1523	3	TMEM87B	2	112863589	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	3471285	112863589	130335784	16	25181											
KAT2B	8850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	20187858	20187858	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	20187858	C	T	20187858	2	4	436	1	0	0	0	0	0	0	0	1	7989	518	18	2		2	KAT2B	3	20187858	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		20187858	177834572	17	25182											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47161751	47161757	+	Frame_Shift_Del	DEL	GCTGTGG	GCTGTGG	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GCTGTGG	GCTGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	47161757	GCTGTGG	-	47161751	7	5	436	1	0	1	0	1	0	0	0	0	14144	1095	38	0	3395	0	SETD2	3	47161751	Frame_Shift_Del	DEL	GCTGTGG	TCGA-BQ-5877-01A-11D-1589-08	26973893	47161751	150860679	18	25183											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52439900	52439900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	52439900	A	G	52439900	3	3	436	1	0	0	0	0	1	0	0	0	1311	101	4	3	1409	3	BAP1	3	52439900	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	5278149	52439900	145582530	19	25184											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	86114798	86114799	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	86114799	-	T	86114798	7	5	436	1	0	1	1	0	0	0	0	0	2569	813	29	0	1212	0	CADM2	3	86114798	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08	33674898	86114798	111907632	20	25185											
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112324460	112324460	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	112324460	A	T	112324460	3	4	436	1	0	0	0	0	1	0	0	0	2856	217	8	5	199	5	CCDC80	3	112324460	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	26209662	112324460	85697970	21	25186											
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183013205	183013205	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	183013205	G	A	183013205	4	1	436	1	0	0	0	0	0	1	0	0	9387	1328	46	2	1858	2	MCF2L2	3	183013205	Nonsense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	70688745	183013205	15009225	22	25187											
CLCN2	1181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184071937	184071937	+	Missense_Mutation	SNP	C	C	T	rs199539697		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	184071937	C	T	184071937	3	4	436	1	0	0	0	0	1	0	0	0	3465	884	31	1	1063	1	CLCN2	3	184071937	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	1058732	184071937	13950493	23	25188											
TACC3	10460	hgsc.bcm.edu	37	4	1741486	1741486	+	Missense_Mutation	SNP	G	G	A	rs148906614		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	1741486	G	A	1741486	3	1	436	1	0	0	0	0	1	0	0	0	15515	1116	39	1	2037	1	TACC3	4	1741486	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08		1741486	189412790	24	25189											
TRIM2	23321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	154249812	154249812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	154249812	G	A	154249812	3	1	436	1	0	0	0	0	1	0	0	0	16506	971	34	2	2195	2	TRIM2	4	154249812	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	152508326	154249812	36904464	25	25190											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187541245	187541245	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	187541245	T	-	187541245	7	5	436	1	0	1	0	1	0	0	0	0	5696	1567	55	0	7343	0	FAT1	4	187541245	Frame_Shift_Del	DEL	T	TCGA-BQ-5877-01A-11D-1589-08	33291433	187541245	3613031	26	25191	318	3									
FAT1	2195	hgsc.bcm.edu;bcgsc.ca	37	4	187541246	187541246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	187541246	G	A	187541246	3	1	436	1	0	0	0	0	1	0	0	0	5696	1294	45	2	7344	2	FAT1	4	187541246	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	1	187541246	3613030	27	25192	318	3									
FAT1	2195	hgsc.bcm.edu	37	4	187541250	187541250	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	187541250	A	-	187541250	7	5	436	1	0	1	0	1	0	0	0	0	5696	72	3	0	7348	0	FAT1	4	187541250	Frame_Shift_Del	DEL	A	TCGA-BQ-5877-01A-11D-1589-08	4	187541250	3613026	28	25193	318	3									
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71479648	71479648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	71479648	C	A	71479648	3	1	436	1	0	0	0	0	1	0	0	0	9235	507	18	4	375	4	MAP1B	5	71479648	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		71479648	109435612	29	25194											
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121787084	121787084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	121787084	T	G	121787084	3	3	436	1	0	0	0	0	1	0	0	0	14854	1551	54	5	2576	5	SNCAIP	5	121787084	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	50307436	121787084	59128176	30	25195											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150946163	150946163	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	150946163	G	C	150946163	3	2	436	1	0	0	0	0	1	0	0	0	5697	1232	43	4	10811	4	FAT2	5	150946163	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	29159079	150946163	29969097	31	25196											
ATP6V0E1	8992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172410944	172410944	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	172410944	C	T	172410944	2	4	436	1	0	0	0	0	0	0	0	1	1175	825	29	2		2	ATP6V0E1	5	172410944	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	21464781	172410944	8504316	32	25197											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7562980	7562980	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	7562980	T	A	7562980	4	1	436	1	0	0	0	0	0	1	0	0	4783	1442	50	5	711	5	DSP	6	7562980	Nonsense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		7562980	163552087	33	25198											
HCRTR2	3062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	55142265	55142265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	55142265	T	C	55142265	3	2	436	1	0	0	0	0	1	0	0	0	7009	1667	58	3	868	3	HCRTR2	6	55142265	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	47579285	55142265	115972802	34	25199											
AMD1	262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111213388	111213388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	111213388	G	A	111213388	3	1	436	1	0	0	0	0	1	0	0	0	566	1145	40	1	470	1	AMD1	6	111213388	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	56071123	111213388	59901679	35	25200											
POU6F2	11281	hgsc.bcm.edu	37	7	39379265	39379265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	39379265	T	C	39379265	3	2	436	1	0	0	0	0	1	0	0	0	12292	1551	54	3	554	3	POU6F2	7	39379265	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		39379265	119759398	36	25201											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48284203	48284203	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	48284203	G	A	48284203	2	1	436	1	0	0	0	0	0	0	0	1	31	1310	46	2		2	ABCA13	7	48284203	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	8904938	48284203	110854460	37	25202											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25766046	25766046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	25766046	A	C	25766046	3	2	436	1	0	0	0	0	1	0	0	0	4883	159	6	5	1190	5	EBF2	8	25766046	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08		25766046	120597976	38	25203											
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	56015502	56015504	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	56015504	GTG	-	56015502	7	5	436	1	0	1	0	1	0	0	0	0	17445	1145	40	0	456	0	XKR4	8	56015502	In_Frame_Del	DEL	GTG	TCGA-BQ-5877-01A-11D-1589-08	30249456	56015502	90348520	39	25204											
ZBTB10	65986	hgsc.bcm.edu	37	8	81431606	81431606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	81431606	T	C	81431606	3	2	436	1	0	0	0	0	1	0	0	0	17535	1638	57	3	2481	3	ZBTB10	8	81431606	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	25416104	81431606	64932416	40	25205											
TG	7038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	133898849	133898849	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	133898849	C	-	133898849	7	5	436	1	0	1	0	1	0	0	0	0	15825	536	19	0	1266	0	TG	8	133898849	Frame_Shift_Del	DEL	C	TCGA-BQ-5877-01A-11D-1589-08	52467243	133898849	12465173	41	25206											
NAPRT1	93100	hgsc.bcm.edu	37	8	144658981	144658981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	144658981	C	A	144658981	3	1	436	1	0	0	0	0	1	0	0	0	10172	623	22	4	932	4	NAPRT1	8	144658981	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	10760132	144658981	1705041	42	25207											
SPINK4	27290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33246702	33246702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	33246702	A	G	33246702	3	3	436	1	0	0	0	0	1	0	0	0	15073	246	9	3	201	3	SPINK4	9	33246702	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08		33246702	107966729	43	25208											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55626411	55626411	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	55626411	G	A	55626411	2	1	436	1	0	0	0	0	0	0	0	1	11518	1103	39	1		1	PCDH15	10	55626411	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08		55626411	79908336	44	25209											
TTC18	118491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75037057	75037057	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	75037057	G	A	75037057	4	1	436	1	0	0	0	0	0	1	0	0	16697	1299	45	2	722	2	TTC18	10	75037057	Nonsense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	19410646	75037057	60497690	45	25210											
TTC18	118491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75104981	75104981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	75104981	C	T	75104981	3	4	436	1	0	0	0	0	1	0	0	0	16697	565	20	2	3006	2	TTC18	10	75104981	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	67924	75104981	60429766	46	25211											
FAM22D	728130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89118099	89118099	+	RNA	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	89118099	C	A	89118099	1	1	436	0	1	0	0	0	0	0	0	0	5548	913	32	4		4	FAM22D	10	89118099	RNA	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	14013118	89118099	46416648	47	25212											
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	131755589	131755589	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	131755589	G	-	131755589	7	5	436	1	0	1	0	1	0	0	0	0	4884	1130	39	0	1212	0	EBF3	10	131755589	Frame_Shift_Del	DEL	G	TCGA-BQ-5877-01A-11D-1589-08	42637490	131755589	3779158	48	25213											
MUC2	4583	hgsc.bcm.edu;ucsc.edu	37	11	1087972	1087972	+	Missense_Mutation	SNP	C	C	G	rs10902088	byfrequency;alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	1087972	C	G	1087972	3	3	436	1	0	0	0	0	1	0	0	0	9982	535	19	4	3545	4	MUC2	11	1087972	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		1087972	133918544	49	25214											
LSP1	4046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1907965	1907965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	1907965	G	T	1907965	3	4	436	1	0	0	0	0	1	0	0	0	9070	1087	38	4	751	4	LSP1	11	1907965	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	819993	1907965	133098551	50	25215											
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57080232	57080232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	57080232	G	T	57080232	3	4	436	1	0	0	0	0	1	0	0	0	16332	1020	36	4	3287	4	TNKS1BP1	11	57080232	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	55172267	57080232	77926284	51	25216											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2760913	2760913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	2760913	G	T	2760913	3	4	436	1	0	0	0	0	1	0	0	0	2542	1183	41	4	4505	4	CACNA1C	12	2760913	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08		2760913	131090982	52	25217											
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	131439188	131439188	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	131439188	G	C	131439188	3	2	436	1	0	0	0	0	1	0	0	0	6650	942	33	4	92	4	GPR133	12	131439188	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	128678275	131439188	2412707	53	25218											
JPH4	84502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24040204	24040204	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	24040204	C	G	24040204	3	3	436	1	0	0	0	0	1	0	0	0	7970	507	18	4	158	4	JPH4	14	24040204	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		24040204	83309336	54	25219											
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24885007	24885007	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	24885007	C	-	24885007	7	5	436	1	0	1	0	1	0	0	0	0	10803	507	18	0	4082	0	NYNRIN	14	24885007	Frame_Shift_Del	DEL	C	TCGA-BQ-5877-01A-11D-1589-08	844803	24885007	82464533	55	25220											
FBXO33	254170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	39868808	39868808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	39868808	G	A	39868808	3	1	436	1	0	0	0	0	1	0	0	0	5750	1319	46	2	91	2	FBXO33	14	39868808	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	14983801	39868808	67480732	56	25221											
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73750966	73750966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	73750966	G	A	73750966	3	1	436	1	0	0	0	0	1	0	0	0	10758	1174	41	2	1199	2	NUMB	14	73750966	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	33882158	73750966	33598574	57	25222											
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	95660233	95660233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	95660233	C	G	95660233	3	3	436	1	0	0	0	0	1	0	0	0	3544	825	29	4	223	4	CLMN	14	95660233	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	21909267	95660233	11689307	58	25223											
AK7	122481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96924426	96924426	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	96924426	A	T	96924426	3	4	436	1	0	0	0	0	1	0	0	0	444	333	12	5	1280	5	AK7	14	96924426	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	1264193	96924426	10425114	59	25224											
CAPN3	825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42691695	42691695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	42691695	C	G	42691695	3	3	436	1	0	0	0	0	1	0	0	0	2630	855	30	4	1289	4	CAPN3	15	42691695	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		42691695	59839697	60	25225											
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45445603	45445603	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	45445603	G	C	45445603	2	2	436	1	0	0	0	0	0	0	0	1	4802	1277	45	4		4	DUOX1	15	45445603	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	2753908	45445603	57085789	61	25226											
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65490142	65490142	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	65490142	G	A	65490142	2	1	436	1	0	0	0	0	0	0	0	1	3431	991	35	2		2	CILP	15	65490142	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	20044539	65490142	37041250	62	25227											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	2059674	T	C	2059674	3	2	436	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		2059674	88295079	63	25228											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2817459	2817459	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	2817459	T	C	2817459	2	2	436	1	0	0	0	0	0	0	0	1	15181	1664	58	3		3	SRRM2	16	2817459	Silent	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	757785	2817459	87537294	64	25229											
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3297239	3297240	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	3297240	-	T	3297239	7	5	436	1	0	1	1	0	0	0	0	0	9466	1029	36	0	1005	0	MEFV	16	3297239	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08	479780	3297239	87057514	65	25230											
ANKS4B	257629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21261659	21261659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	21261659	G	A	21261659	3	1	436	1	0	0	0	0	1	0	0	0	691	1116	39	1	778	1	ANKS4B	16	21261659	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	17964420	21261659	69093094	66	25231											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	51174769	51174769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	51174769	G	C	51174769	3	2	436	1	0	0	0	0	1	0	0	0	13823	1087	38	4	2618	4	SALL1	16	51174769	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	29913110	51174769	39179984	67	25232											
IRX5	10265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	54966812	54966813	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	54966813	GC	-	54966812	7	5	436	1	0	1	0	1	0	0	0	0	7854	971	34	0	658	0	IRX5	16	54966812	Frame_Shift_Del	DEL	GC	TCGA-BQ-5877-01A-11D-1589-08	3792043	54966812	35387941	68	25233											
SLC6A2	6530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	55705980	55705980	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	55705980	C	T	55705980	2	4	436	1	0	0	0	0	0	0	0	1	14696	668	24	2		2	SLC6A2	16	55705980	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	739168	55705980	34648773	69	25234											
SPAG7	9552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4862852	4862852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	4862852	C	T	4862852	3	4	436	1	0	0	0	0	1	0	0	0	14996	864	30	2	26	2	SPAG7	17	4862852	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		4862852	76332358	70	25235											
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10366488	10366488	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	10366488	G	A	10366488	4	1	436	1	0	0	0	0	0	1	0	0	10044	1124	39	1	5120	1	MYH4	17	10366488	Nonsense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	5503636	10366488	70828722	71	25236											
PLD6	201164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17106274	17106274	+	Missense_Mutation	SNP	G	G	A	rs139543758	alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	17106274	G	A	17106274	3	1	436	1	0	0	0	0	1	0	0	0	12057	1145	40	1	196	1	PLD6	17	17106274	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	6739786	17106274	64088936	72	25237											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18039921	18039921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	18039921	T	G	18039921	3	3	436	1	0	0	0	0	1	0	0	0	10070	1551	54	5	4750	5	MYO15A	17	18039921	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	933647	18039921	63155289	73	25238											
KRTAP1-5	83895	hgsc.bcm.edu	37	17	39183083	39183083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	39183083	T	C	39183083	3	2	436	1	0	0	0	0	1	0	0	0	8511	1580	55	3	203	3	KRTAP1-5	17	39183083	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	21143162	39183083	42012127	74	25239											
KRTAP1-5	83895	hgsc.bcm.edu	37	17	39183129	39183129	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	39183129	A	G	39183129	2	3	436	1	0	0	0	0	0	0	0	1	8511	175	7	3		3	KRTAP1-5	17	39183129	Silent	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	46	39183129	42012081	75	25240											
NSF	4905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	44806264	44806264	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	44806264	G	A	44806264	2	1	436	1	0	0	0	0	0	0	0	1	10678	991	35	2		2	NSF	17	44806264	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	5623135	44806264	36388946	76	25241											
USP32	84669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58348812	58348812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	58348812	T	G	58348812	3	3	436	1	0	0	0	0	1	0	0	0	17075	1841	64	5	4328	5	USP32	17	58348812	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	13542548	58348812	22846398	77	25242											
SPHK1	8877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74383269	74383269	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	74383269	C	G	74383269	3	3	436	1	0	0	0	0	1	0	0	0	15058	739	26	4	1079	4	SPHK1	17	74383269	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	16034457	74383269	6811941	78	25243											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	51025752	51025752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	51025752	G	T	51025752	3	4	436	1	0	0	0	0	1	0	0	0	4284	971	34	4	4089	4	DCC	18	51025752	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08		51025752	27051496	79	25244											
SHC2	25759	hgsc.bcm.edu	37	19	438830	438830	+	Missense_Mutation	SNP	T	T	C	rs140148508		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	438830	T	C	438830	3	2	436	1	0	0	0	0	1	0	0	0	14284	1725	60	3	1176	3	SHC2	19	438830	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		438830	58690153	80	25245											
ARID3A	1820	hgsc.bcm.edu	37	19	971962	971962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	971962	A	G	971962	3	3	436	1	0	0	0	0	1	0	0	0	916	43	2	3	1709	3	ARID3A	19	971962	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	533132	971962	58157021	81	25246											
BTBD2	55643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1986877	1986877	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	1986877	C	G	1986877	2	3	436	1	0	0	0	0	0	0	0	1	1545	639	23	4		4	BTBD2	19	1986877	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	1014915	1986877	57142106	82	25247											
SLC44A2	57153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10745556	10745556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	10745556	G	C	10745556	3	2	436	1	0	0	0	0	1	0	0	0	14649	1339	47	4	1025	4	SLC44A2	19	10745556	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	8758679	10745556	48383427	83	25248											
DOCK6	57572	hgsc.bcm.edu	37	19	11326077	11326077	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	11326077	T	C	11326077	2	2	436	1	0	0	0	0	0	0	0	1	4693	1567	55	3		3	DOCK6	19	11326077	Silent	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	580521	11326077	47802906	84	25249											
ZNF823	55552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11833231	11833231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	11833231	G	C	11833231	3	2	436	1	0	0	0	0	1	0	0	0	18191	1059	37	4	718	4	ZNF823	19	11833231	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	507154	11833231	47295752	85	25250											
PODNL1	79883	hgsc.bcm.edu	37	19	14044017	14044017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	14044017	T	C	14044017	3	2	436	1	0	0	0	0	1	0	0	0	12186	1493	52	3	502	3	PODNL1	19	14044017	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	2210786	14044017	45084966	86	25251											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35500801	35500802	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	CA	35500802	-	CA	35500801	7	5	436	1	0	1	1	0	0	0	0	0	6754	623	22	0	264	0	GRAMD1A	19	35500801	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08	21456784	35500801	23628182	87	25252											
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36883897	36883897	+	Missense_Mutation	SNP	G	G	T	rs143115887	alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	36883897	G	T	36883897	3	4	436	1	0	0	0	0	1	0	0	0	17665	1261	44	4	257	4	ZFP82	19	36883897	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	1383096	36883897	22245086	88	25253											
SPTBN4	57731	hgsc.bcm.edu	37	19	41018832	41018832	+	Silent	SNP	A	A	G	rs814533		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	41018832	A	G	41018832	2	3	436	1	0	0	0	0	0	0	0	1	15133	291	11	3		3	SPTBN4	19	41018832	Silent	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	4134935	41018832	18110151	89	25254											
CPT1C	126129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50200612	50200612	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	50200612	C	A	50200612	2	1	436	1	0	0	0	0	0	0	0	1	3835	581	21	4		4	CPT1C	19	50200612	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	9181780	50200612	8928371	90	25255											
ZNF613	79898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52447643	52447643	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	52447643	T	A	52447643	3	1	436	1	0	0	0	0	1	0	0	0	18050	1461	51	5	521	5	ZNF613	19	52447643	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	2247031	52447643	6681340	91	25256											
MZF1	7593	hgsc.bcm.edu;broad.mit.edu	37	19	59082617	59082617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	59082617	A	G	59082617	3	3	436	1	0	0	0	0	1	0	0	0	10115	246	9	3	2084	3	MZF1	19	59082617	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	6634974	59082617	46366	92	25257											
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	2775062	2775063	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	2775063	-	A	2775062	7	5	436	1	0	1	1	0	0	0	0	0	3839	1406	49	0	229	0	CPXM1	20	2775062	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08		2775062	60250458	93	25258											
ZNF341	84905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32357951	32357951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	32357951	A	C	32357951	3	2	436	1	0	0	0	0	1	0	0	0	17869	304	11	5	1492	5	ZNF341	20	32357951	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	29582889	32357951	30667569	94	25259											
MORC3	23515	hgsc.bcm.edu	37	21	37692578	37692578	+	Missense_Mutation	SNP	C	C	A	rs202025634		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	A	37692578	C	A	37692578	3	1	436	1	0	0	0	0	1	0	0	0	9710	507	18	4	18	4	MORC3	21	37692578	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		37692578	10437317	95	25260											
CECR6	27439	hgsc.bcm.edu	37	22	17600589	17600589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	17600589	C	G	17600589	3	3	436	1	0	0	0	0	1	0	0	0	3210	507	18	4	311	4	CECR6	22	17600589	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		17600589	33703977	96	25261											
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	22285579	22285579	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	-	22285579	T	-	22285579	7	5	436	1	0	1	0	1	0	0	0	0	12349	1464	51	0	544	0	PPM1F	22	22285579	Frame_Shift_Del	DEL	T	TCGA-BQ-5877-01A-11D-1589-08	4684990	22285579	29018987	97	25262											
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24447376	24447376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	24447376	C	T	24447376	3	4	436	1	0	0	0	0	1	0	0	0	2530	768	27	1	772	1	CABIN1	22	24447376	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	2161797	24447376	26857190	98	25263											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30050709	30050709	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	T	30050709	A	T	30050709	4	4	436	1	0	0	0	0	0	1	0	0	10364	15	1	5	529	5	NF2	22	30050709	Nonsense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	5603333	30050709	21253857	99	25264											
USP9Y	8287	hgsc.bcm.edu	37	Y	14847584	14847584	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	G	14847584	A	G	14847584	2	3	436	1	0	0	0	0	0	0	0	1	17103	359	13	3		3	USP9Y	24	14847584	Silent	SNP	A	TCGA-BQ-5877-01A-11D-1589-08		14847584	44525982	100	25265											
USP9Y	8287	hgsc.bcm.edu	37	Y	14847619	14847619	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	C	14847619	A	C	14847619	3	2	436	1	0	0	0	0	1	0	0	0	17103	101	4	5	753	5	USP9Y	24	14847619	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	35	14847619	44525947	101	25266											
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6204188	6204188	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	6204188	G	A	6204188	2	1	437	1	0	0	0	0	0	0	0	1	3330	1256	44	2		2	CHD5	1	6204188	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		6204188	243046433	1	25267											
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11562884	11562884	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	11562884	G	T	11562884	4	4	437	1	0	0	0	0	0	1	0	0	12743	1175	41	4	1252	4	PTCHD2	1	11562884	Nonsense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	5358696	11562884	237687737	2	25268											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27057775	27057775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	27057775	C	T	27057775	3	4	437	1	0	0	0	0	1	0	0	0	913	826	29	2	1493	2	ARID1A	1	27057775	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	15494891	27057775	222192846	3	25269											
POMGNT1	55624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46662703	46662704	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	46662704	GA	-	46662703	7	5	437	1	0	1	0	1	0	0	0	0	12250	1164	41	0	1888	0	POMGNT1	1	46662703	Frame_Shift_Del	DEL	GA	TCGA-BQ-5878-01A-11D-1589-08	19604928	46662703	202587918	4	25270											
C1orf177	163747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	55272686	55272686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	55272686	T	C	55272686	3	2	437	1	0	0	0	0	1	0	0	0	2019	1725	60	3	128	3	C1orf177	1	55272686	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	8609983	55272686	193977935	5	25271											
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62672679	62672679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	62672679	G	C	62672679	3	2	437	1	0	0	0	0	1	0	0	0	8596	1000	35	4	381	4	L1TD1	1	62672679	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	7399993	62672679	186577942	6	25272											
VANGL1	81839	broad.mit.edu;bcgsc.ca	37	1	116202267	116202267	+	Missense_Mutation	SNP	G	G	C	rs143990097	alternate_allele	TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	116202267	G	C	116202267	3	2	437	1	0	0	0	0	1	0	0	0	17131	942	33	4	83	4	VANGL1	1	116202267	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	53529588	116202267	133048354	7	25273											
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156849153	156849153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	156849153	G	A	156849153	3	1	437	1	0	0	0	0	1	0	0	0	10713	1159	40	1	2233	1	NTRK1	1	156849153	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	40646886	156849153	92401468	8	25274											
GLRX2	51022	hgsc.bcm.edu;bcgsc.ca	37	1	193074704	193074704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	193074704	G	A	193074704	3	1	437	1	0	0	0	0	1	0	0	0	6467	1319	46	2	571	2	GLRX2	1	193074704	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	36225551	193074704	56175917	9	25275											
NEK7	140609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	198266319	198266319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	198266319	G	C	198266319	3	2	437	1	0	0	0	0	1	0	0	0	10336	933	33	4	777	4	NEK7	1	198266319	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	5191615	198266319	50984302	10	25276											
GDF7	151449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20871056	20871056	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	20871056	C	T	20871056	2	4	437	1	0	0	0	0	0	0	0	1	6325	535	19	1		1	GDF7	2	20871056	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		20871056	222328317	11	25277											
AUP1	550	hgsc.bcm.edu	37	2	74756587	74756587	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	74756587	G	C	74756587	2	2	437	1	0	0	0	0	0	0	0	1	1220	929	33	4		4	AUP1	2	74756587	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	53885531	74756587	168442786	12	25278											
HOXD8	3234	hgsc.bcm.edu	37	2	176995295	176995295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	176995295	G	C	176995295	3	2	437	1	0	0	0	0	1	0	0	0	7332	991	35	4	203	4	HOXD8	2	176995295	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	102238708	176995295	66204078	13	25279											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179401833	179401833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	179401833	C	T	179401833	3	4	437	1	0	0	0	0	1	0	0	0	16747	864	30	2	8004	2	TTN	2	179401833	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2406538	179401833	63797540	14	25280											
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179452053	179452053	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	179452053	C	T	179452053	2	4	437	1	0	0	0	0	0	0	0	1	16747	842	30	2		2	TTN	2	179452053	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	50220	179452053	63747320	15	25281											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179458757	179458757	+	Missense_Mutation	SNP	C	C	T	rs191927501		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	179458757	C	T	179458757	3	4	437	1	0	0	0	0	1	0	0	0	16747	652	23	1	49880	1	TTN	2	179458757	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	6704	179458757	63740616	16	25282											
FSIP2	401024	broad.mit.edu	37	2	186671552	186671552	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	186671552	C	G	186671552	4	3	437	1	0	0	0	0	0	1	0	0	6082	838	29	4	17852	4	FSIP2	2	186671552	Nonsense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	7212795	186671552	56527821	17	25283											
CPO	130749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207833968	207833968	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	207833968	G	C	207833968	2	2	437	1	0	0	0	0	0	0	0	1	3822	1277	45	4		4	CPO	2	207833968	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	21162416	207833968	35365405	18	25284											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215840568	215840568	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	215840568	A	G	215840568	2	3	437	1	0	0	0	0	0	0	0	1	30	340	12	3		3	ABCA12	2	215840568	Silent	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	8006600	215840568	27358805	19	25285											
TMPPE	643853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	33135655	33135655	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	33135655	C	T	33135655	2	4	437	1	0	0	0	0	0	0	0	1	16250	871	31	1		1	TMPPE	3	33135655	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		33135655	164886775	20	25286											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41274905	41274905	+	Silent	SNP	C	C	T	rs74692094	alternate_allele	TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	41274905	C	T	41274905	2	4	437	1	0	0	0	0	0	0	0	1	4018	813	29	2		2	CTNNB1	3	41274905	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	8139250	41274905	156747525	21	25287											
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51697406	51697406	+	Silent	SNP	C	C	T	rs192987707		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	51697406	C	T	51697406	2	4	437	1	0	0	0	0	0	0	0	1	13007	535	19	1		1	RAD54L2	3	51697406	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	10422501	51697406	146325024	22	25288											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69101211	69101211	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	69101211	G	A	69101211	2	1	437	1	0	0	0	0	0	0	0	1	16240	929	33	2		2	TMF1	3	69101211	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	17403805	69101211	128921219	23	25289											
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	86950416	86950416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	86950416	T	C	86950416	3	2	437	1	0	0	0	0	1	0	0	0	9279	1821	63	3	221	3	MAPK10	4	86950416	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08		86950416	104203860	24	25290											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	151827110	151827110	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	151827110	A	T	151827110	2	4	437	1	0	0	0	0	0	0	0	1	8938	117	5	5		5	LRBA	4	151827110	Silent	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	64876694	151827110	39327166	25	25291											
HMGB2	3148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	174254775	174254775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	174254775	G	A	174254775	3	1	437	1	0	0	0	0	1	0	0	0	7233	1116	39	1	619	1	HMGB2	4	174254775	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	22427665	174254775	16899501	26	25292											
EXOC3	11336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	446365	446365	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	446365	G	A	446365	2	1	437	1	0	0	0	0	0	0	0	1	5305	1223	43	2		2	EXOC3	5	446365	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		446365	180468895	27	25293											
SLC45A2	51151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	33984558	33984558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	33984558	C	T	33984558	3	4	437	1	0	0	0	0	1	0	0	0	14654	855	30	2	1504	2	SLC45A2	5	33984558	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	33538193	33984558	146930702	28	25294											
PRLR	5618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	35070231	35070231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	35070231	G	C	35070231	3	2	437	1	0	0	0	0	1	0	0	0	12541	1000	35	4	1204	4	PRLR	5	35070231	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1085673	35070231	145845029	29	25295											
SEPP1	6414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	42801313	42801313	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	42801313	C	G	42801313	3	3	437	1	0	0	0	0	1	0	0	0	14070	594	21	4	494	4	SEPP1	5	42801313	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	7731082	42801313	138113947	30	25296											
GCNT4	51301	broad.mit.edu	37	5	74325475	74325475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	74325475	T	C	74325475	3	2	437	1	0	0	0	0	1	0	0	0	6310	1609	56	3	977	3	GCNT4	5	74325475	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	31524162	74325475	106589785	31	25297											
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136328174	136328174	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	136328174	G	A	136328174	2	1	437	1	0	0	0	0	0	0	0	1	15091	1333	46	2		2	SPOCK1	5	136328174	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	62002699	136328174	44587086	32	25298											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137715373	137715373	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	137715373	T	C	137715373	2	2	437	1	0	0	0	0	0	0	0	1	8134	1654	58	3		3	KDM3B	5	137715373	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	1387199	137715373	43199887	33	25299											
SLC23A1	9963	hgsc.bcm.edu	37	5	138715041	138715067	+	In_Frame_Del	DEL	GACCTGTGCTCGGAGGGAGACAGGATG	GACCTGTGCTCGGAGGGAGACAGGATG	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	GACCTGTGCTCGGAGGGAGACAGGATG	GACCTGTGCTCGGAGGGAGACAGGATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	138715067	GACCTGTGCTCGGAGGGAGACAGGATG	-	138715041	7	5	437	1	0	1	0	1	0	0	0	0	14475	1299	45	0	892	0	SLC23A1	5	138715041	In_Frame_Del	DEL	GACCTGTGCTCGGAGGGAGACAGGATG	TCGA-BQ-5878-01A-11D-1589-08	999668	138715041	42200219	34	25300											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139197069	139197069	+	Silent	SNP	C	C	T	rs142589356		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	139197069	C	T	139197069	2	4	437	1	0	0	0	0	0	0	0	1	12657	535	19	1		1	PSD2	5	139197069	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	482028	139197069	41718191	35	25301											
PCDHB15	56121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140625417	140625417	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	140625417	G	C	140625417	3	2	437	1	0	0	0	0	1	0	0	0	11547	1174	41	4	273	4	PCDHB15	5	140625417	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1428348	140625417	40289843	36	25302											
FAT2	2196	broad.mit.edu	37	5	150892049	150892049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	150892049	T	C	150892049	3	2	437	1	0	0	0	0	1	0	0	0	5697	1667	58	3	1483	3	FAT2	5	150892049	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	10266632	150892049	30023211	37	25303											
RPL26L1	51121	hgsc.bcm.edu;broad.mit.edu	37	5	172396527	172396527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	172396527	G	A	172396527	3	1	437	1	0	0	0	0	1	0	0	0	13587	1291	45	2	431	2	RPL26L1	5	172396527	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	21504478	172396527	8518733	38	25304											
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	6196094	6196094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	6196094	G	A	6196094	3	1	437	1	0	0	0	0	1	0	0	0	5342	1059	37	1	981	1	F13A1	6	6196094	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		6196094	164918973	39	25305											
HMGA1	3159	broad.mit.edu	37	6	34210572	34210572	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	34210572	G	A	34210572	2	1	437	1	0	0	0	0	0	0	0	1	7230	1246	43	2		2	HMGA1	6	34210572	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	28014478	34210572	136904495	40	25306											
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43320114	43320114	+	Splice_Site	DEL	C	C	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	43320114	C	-	43320114	8	5	437	1	0	1	0	1	0	0	1	0	17848	521	18	0	4092	0	ZNF318	6	43320114	Splice_Site	DEL	C	TCGA-BQ-5878-01A-11D-1589-08	9109542	43320114	127794953	41	25307											
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	55223928	55223928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	55223928	C	T	55223928	3	4	437	1	0	0	0	0	1	0	0	0	6358	838	29	2	966	2	GFRAL	6	55223928	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	11903814	55223928	115891139	42	25308											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106968949	106968949	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	106968949	A	T	106968949	3	4	437	1	0	0	0	0	1	0	0	0	430	304	11	5	2648	5	AIM1	6	106968949	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	51745021	106968949	64146118	43	25309											
LAMA4	3910	broad.mit.edu	37	6	112457351	112457351	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	112457351	G	A	112457351	4	1	437	1	0	0	0	0	0	1	0	0	8615	1299	45	2	2143	2	LAMA4	6	112457351	Nonsense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	5488402	112457351	58657716	44	25310											
CTGF	1490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132271489	132271489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	132271489	C	T	132271489	3	4	437	1	0	0	0	0	1	0	0	0	4010	893	31	1	577	1	CTGF	6	132271489	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	19814138	132271489	38843578	45	25311											
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	148808752	148808752	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	148808752	C	G	148808752	2	3	437	1	0	0	0	0	0	0	0	1	13861	813	29	4		4	SASH1	6	148808752	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	16537263	148808752	22306315	46	25312											
RMND1	55005	ucsc.edu	37	6	151751272	151751272	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	151751272	C	T	151751272	5	4	437	1	0	0	0	0	0	0	1	0	13409	492	17	2	651	2	RMND1	6	151751272	Splice_Site	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2942520	151751272	19363795	47	25313											
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu	37	7	5352384	5352384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	5352384	G	A	5352384	3	1	437	1	0	0	0	0	1	0	0	0	16351	1059	37	1	784	1	TNRC18	7	5352384	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		5352384	153786279	48	25314											
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47440438	47440438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	47440438	G	A	47440438	3	1	437	1	0	0	0	0	1	0	0	0	16356	971	34	2	3612	2	TNS3	7	47440438	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	42088054	47440438	111698225	49	25315											
POM121	9883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	72412723	72412723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	72412723	A	G	72412723	3	3	437	1	0	0	0	0	1	0	0	0	12246	217	8	3	1434	3	POM121	7	72412723	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	24972285	72412723	86725940	50	25316											
GATAD1	57798	broad.mit.edu	37	7	92078080	92078080	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	92078080	T	A	92078080	2	1	437	1	0	0	0	0	0	0	0	1	6266	1771	62	5		5	GATAD1	7	92078080	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	19665357	92078080	67060583	51	25317											
PPP1R9A	55607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	94915545	94915545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	94915545	C	A	94915545	3	1	437	1	0	0	0	0	1	0	0	0	12388	855	30	4	3703	4	PPP1R9A	7	94915545	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2837465	94915545	64223118	52	25318											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41577342	41577342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	41577342	C	T	41577342	3	4	437	1	0	0	0	0	1	0	0	0	620	855	30	2	5187	2	ANK1	8	41577342	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		41577342	104786680	53	25319											
GDAP1	54332	broad.mit.edu	37	8	75263599	75263599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	75263599	C	T	75263599	3	4	437	1	0	0	0	0	1	0	0	0	6314	768	27	1	214	1	GDAP1	8	75263599	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	33686257	75263599	71100423	54	25320											
SPIN1	10927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	91083448	91083448	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	91083448	G	C	91083448	3	2	437	1	0	0	0	0	1	0	0	0	15064	942	33	4	531	4	SPIN1	9	91083448	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		91083448	50129983	55	25321											
RXRA	6256	ucsc.edu	37	9	137300036	137300036	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	137300036	C	T	137300036	2	4	437	1	0	0	0	0	0	0	0	1	13776	816	29	2		2	RXRA	9	137300036	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	46216588	137300036	3913395	56	25322											
LCN1	3933	broad.mit.edu	37	9	138415819	138415819	+	Missense_Mutation	SNP	G	G	A	rs199573452		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	138415819	G	A	138415819	3	1	437	1	0	0	0	0	1	0	0	0	8687	1058	37	1	400	1	LCN1	9	138415819	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1115783	138415819	2797612	57	25323											
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	22676767	22676767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	22676767	G	T	22676767	3	4	437	1	0	0	0	0	1	0	0	0	14995	971	34	4	716	4	SPAG6	10	22676767	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		22676767	112857980	58	25324											
PIP4K2A	5305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	23003187	23003187	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	23003187	G	A	23003187	2	1	437	1	0	0	0	0	0	0	0	1	11943	1049	37	1		1	PIP4K2A	10	23003187	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	326420	23003187	112531560	59	25325											
ZNF485	220992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	44112496	44112496	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	44112496	C	T	44112496	2	4	437	1	0	0	0	0	0	0	0	1	17950	825	29	2		2	ZNF485	10	44112496	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	21109309	44112496	91422251	60	25326											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55583106	55583106	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	55583106	G	C	55583106	2	2	437	1	0	0	0	0	0	0	0	1	11518	929	33	4		4	PCDH15	10	55583106	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	11470610	55583106	79951641	61	25327											
AGAP5	729092	broad.mit.edu	37	10	75457454	75457454	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	75457454	T	C	75457454	2	2	437	1	0	0	0	0	0	0	0	1	371	1722	60	3		3	AGAP5	10	75457454	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	19874348	75457454	60077293	62	25328											
DLG5	9231	broad.mit.edu;bcgsc.ca	37	10	79686110	79686110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	79686110	G	A	79686110	3	1	437	1	0	0	0	0	1	0	0	0	4560	971	34	2	5718	2	DLG5	10	79686110	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	4228656	79686110	55848637	63	25329											
RPS24	6229	hgsc.bcm.edu;broad.mit.edu	37	10	79796974	79796974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	79796974	A	G	79796974	3	3	437	1	0	0	0	0	1	0	0	0	13648	72	3	3	316	3	RPS24	10	79796974	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	110864	79796974	55737773	64	25330											
FAM178A	55719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102683799	102683799	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	102683799	C	T	102683799	2	4	437	1	0	0	0	0	0	0	0	1	5507	709	25	2		2	FAM178A	10	102683799	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	22886825	102683799	32850948	65	25331											
NFKB2	4791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104161522	104161522	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	104161522	G	C	104161522	3	2	437	1	0	0	0	0	1	0	0	0	10383	1290	45	4	2392	4	NFKB2	10	104161522	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1477723	104161522	31373225	66	25332											
BRSK2	9024	broad.mit.edu	37	11	1466527	1466527	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	1466527	G	C	1466527	2	2	437	1	0	0	0	0	0	0	0	1	1526	1219	43	4		4	BRSK2	11	1466527	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		1466527	133539989	67	25333											
OR52J3	119679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5068082	5068082	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	5068082	C	T	5068082	2	4	437	1	0	0	0	0	0	0	0	1	11129	825	29	2		2	OR52J3	11	5068082	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	3601555	5068082	129938434	68	25334											
OR51B6	390058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5373545	5373545	+	Missense_Mutation	SNP	G	G	T	rs138981931	alternate_allele	TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	5373545	G	T	5373545	3	4	437	1	0	0	0	0	1	0	0	0	11099	1145	40	4	810	4	OR51B6	11	5373545	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	305463	5373545	129632971	69	25335											
TUB	7275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	8120419	8120419	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	8120419	C	G	8120419	3	3	437	1	0	0	0	0	1	0	0	0	16754	805	28	4	1358	4	TUB	11	8120419	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2746874	8120419	126886097	70	25336											
ELP4	26610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	31561263	31561263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	31561263	A	G	31561263	3	3	437	1	0	0	0	0	1	0	0	0	5084	246	9	3	324	3	ELP4	11	31561263	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	23440844	31561263	103445253	71	25337											
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55111508	55111508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	55111508	C	A	55111508	3	1	437	1	0	0	0	0	1	0	0	0	11048	565	20	4	834	4	OR4A16	11	55111508	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	23550245	55111508	79895008	72	25338											
BSCL2	26580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62458109	62458109	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	62458109	C	T	62458109	2	4	437	1	0	0	0	0	0	0	0	1	1529	680	24	2		2	BSCL2	11	62458109	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	7346601	62458109	72548407	73	25339											
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73418504	73418504	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	73418504	A	-	73418504	7	5	437	1	0	1	0	1	0	0	0	0	12964	359	13	0	182	0	RAB6A	11	73418504	Frame_Shift_Del	DEL	A	TCGA-BQ-5878-01A-11D-1589-08	10960395	73418504	61588012	74	25340											
USP28	57646	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	113679118	113679119	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	TG	113679119	-	TG	113679118	7	5	437	1	0	1	1	0	0	0	0	0	17070	275	10	0	1059	0	USP28	11	113679118	Frame_Shift_Ins	INS	-	TCGA-BQ-5878-01A-11D-1589-08	40260614	113679118	21327398	75	25341	319	2									
USP28	57646	hgsc.bcm.edu	37	11	113679119	113679119	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	113679119	C	-	113679119	7	5	437	1	0	1	0	1	0	0	0	0	17070	523	19	0	1060	0	USP28	11	113679119	Frame_Shift_Del	DEL	C	TCGA-BQ-5878-01A-11D-1589-08	1	113679119	21327397	76	25342	319	2									
NANOG	79923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7942255	7942255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	7942255	A	C	7942255	3	2	437	1	0	0	0	0	1	0	0	0	10157	69	3	5	47	5	NANOG	12	7942255	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08		7942255	125909640	77	25343											
MAGOHB	55110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10766047	10766047	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	10766047	G	T	10766047	2	4	437	1	0	0	0	0	0	0	0	1	9202	1057	37	4		4	MAGOHB	12	10766047	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	2823792	10766047	123085848	78	25344											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49434210	49434210	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	49434210	T	-	49434210	7	5	437	1	0	1	0	1	0	0	0	0	9628	1667	58	0	9366	0	MLL2	12	49434210	Frame_Shift_Del	DEL	T	TCGA-BQ-5878-01A-11D-1589-08	38668163	49434210	84417685	79	25345											
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120173153	120173153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	120173153	C	T	120173153	3	4	437	1	0	0	0	0	1	0	0	0	3440	913	32	2	3337	2	CIT	12	120173153	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	70738943	120173153	13678742	80	25346											
OASL	8638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121465530	121465530	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	121465530	C	A	121465530	4	1	437	1	0	0	0	0	0	1	0	0	10809	922	32	4	808	4	OASL	12	121465530	Nonsense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	1292377	121465530	12386365	81	25347											
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23467861	23467861	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	23467861	A	C	23467861	2	2	437	1	0	0	0	0	0	0	0	1	1784	175	7	5		5	C14orf93	14	23467861	Silent	SNP	A	TCGA-BQ-5878-01A-11D-1589-08		23467861	83881679	82	25348											
SOS2	6655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50605361	50605361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	50605361	G	A	50605361	3	1	437	1	0	0	0	0	1	0	0	0	14950	1000	35	2	1095	2	SOS2	14	50605361	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	27137500	50605361	56744179	83	25349											
FBXO34	55030	broad.mit.edu	37	14	55818482	55818482	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	55818482	C	T	55818482	2	4	437	1	0	0	0	0	0	0	0	1	5751	816	29	2		2	FBXO34	14	55818482	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	5213121	55818482	51531058	84	25350											
AK7	122481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96917831	96917831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	96917831	G	A	96917831	3	1	437	1	0	0	0	0	1	0	0	0	444	1058	37	1	1060	1	AK7	14	96917831	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	41099349	96917831	10431709	85	25351											
ARHGAP11A	9824	broad.mit.edu;bcgsc.ca	37	15	32929514	32929514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	32929514	C	T	32929514	3	4	437	1	0	0	0	0	1	0	0	0	863	913	32	2	2609	2	ARHGAP11A	15	32929514	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		32929514	69601878	86	25352											
MAP2K5	5607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	67956981	67956981	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	67956981	G	C	67956981	3	2	437	1	0	0	0	0	1	0	0	0	9247	942	33	4	895	4	MAP2K5	15	67956981	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	35027467	67956981	34574411	87	25353											
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	87217502	87217502	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	87217502	A	G	87217502	5	3	437	1	0	0	0	0	0	0	1	0	375	202	7	3	3000	3	AGBL1	15	87217502	Splice_Site	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	19260521	87217502	15313890	88	25354											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2816146	2816146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	2816146	C	G	2816146	3	3	437	1	0	0	0	0	1	0	0	0	15181	826	29	4	5655	4	SRRM2	16	2816146	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		2816146	87538607	89	25355											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2818196	2818196	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	2818196	C	G	2818196	3	3	437	1	0	0	0	0	1	0	0	0	15181	913	32	4	7705	4	SRRM2	16	2818196	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2050	2818196	87536557	90	25356											
LONP2	83752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48385617	48385617	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	48385617	T	C	48385617	2	2	437	1	0	0	0	0	0	0	0	1	8900	1809	63	3		3	LONP2	16	48385617	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	45567421	48385617	41969136	91	25357											
HP	3240	hgsc.bcm.edu	37	16	72094682	72094682	+	Missense_Mutation	SNP	A	A	G	rs470428		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	72094682	A	G	72094682	3	3	437	1	0	0	0	0	1	0	0	0	7334	275	10	3	1140	3	HP	16	72094682	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	23709065	72094682	18260071	92	25358											
HPR	3250	hgsc.bcm.edu	37	16	72110800	72110800	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	72110800	G	A	72110800	2	1	437	1	0	0	0	0	0	0	0	1	7344	991	35	2		2	HPR	16	72110800	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	16118	72110800	18243953	93	25359											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72828734	72828734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	72828734	C	T	72828734	3	4	437	1	0	0	0	0	1	0	0	0	17646	681	24	2	3272	2	ZFHX3	16	72828734	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	717934	72828734	17526019	94	25360											
GEMIN4	50628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	649344	649344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	649344	C	G	649344	3	3	437	1	0	0	0	0	1	0	0	0	6337	835	29	4	1241	4	GEMIN4	17	649344	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		649344	80545866	95	25361											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27430634	27430634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	27430634	A	T	27430634	3	4	437	1	0	0	0	0	1	0	0	0	10072	188	7	5	2762	5	MYO18A	17	27430634	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	26781290	27430634	53764576	96	25362											
KCNJ16	3773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	68129360	68129360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	68129360	G	A	68129360	3	1	437	1	0	0	0	0	1	0	0	0	8057	1319	46	2	1134	2	KCNJ16	17	68129360	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	40698726	68129360	13065850	97	25363											
FOXK2	3607	broad.mit.edu	37	17	80525990	80525990	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	80525990	C	T	80525990	2	4	437	1	0	0	0	0	0	0	0	1	6022	726	26	2		2	FOXK2	17	80525990	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	12396630	80525990	669220	98	25364											
YES1	7525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	756694	756694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	756694	G	A	756694	3	1	437	1	0	0	0	0	1	0	0	0	17486	942	33	2	1541	2	YES1	18	756694	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		756694	77320554	99	25365											
DSC3	1825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	28576918	28576918	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	28576918	T	-	28576918	7	5	437	1	0	1	0	1	0	0	0	0	4769	1725	60	0	397	0	DSC3	18	28576918	Frame_Shift_Del	DEL	T	TCGA-BQ-5878-01A-11D-1589-08	27820224	28576918	49500330	100	25366											
PCSK4	54760	broad.mit.edu	37	19	1489873	1489873	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	1489873	A	-	1489873	7	5	437	1	0	1	0	1	0	0	0	0	11609	243	9	0	2110	0	PCSK4	19	1489873	Frame_Shift_Del	DEL	A	TCGA-BQ-5878-01A-11D-1589-08		1489873	57639110	101	25367											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9087506	9087506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	9087506	C	T	9087506	3	4	437	1	0	0	0	0	1	0	0	0	9980	826	29	2	39550	2	MUC16	19	9087506	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	7597633	9087506	50041477	102	25368											
ECSIT	51295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11618829	11618829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	11618829	T	C	11618829	3	2	437	1	0	0	0	0	1	0	0	0	4902	1435	50	3	538	3	ECSIT	19	11618829	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	2531323	11618829	47510154	103	25369											
ZNF844	284391	broad.mit.edu	37	19	12187704	12187704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	12187704	G	A	12187704	3	1	437	1	0	0	0	0	1	0	0	0	18202	1029	36	2	1783	2	ZNF844	19	12187704	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	568875	12187704	46941279	104	25370											
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12875721	12875721	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	12875721	C	T	12875721	2	4	437	1	0	0	0	0	0	0	0	1	7290	842	30	2		2	HOOK2	19	12875721	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	688017	12875721	46253262	105	25371											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15288375	15288375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	15288375	T	C	15288375	3	2	437	1	0	0	0	0	1	0	0	0	10557	1725	60	3	2641	3	NOTCH3	19	15288375	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	2412654	15288375	43840608	106	25372											
UNC13A	23025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	17750273	17750273	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	17750273	A	T	17750273	3	4	437	1	0	0	0	0	1	0	0	0	16996	304	11	5	2273	5	UNC13A	19	17750273	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	2461898	17750273	41378710	107	25373											
ZNF85	7639	broad.mit.edu	37	19	21131687	21131687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	21131687	G	C	21131687	3	2	437	1	0	0	0	0	1	0	0	0	18205	1291	45	4	381	4	ZNF85	19	21131687	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	3381414	21131687	37997296	108	25374											
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41596079	41596079	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	41596079	C	G	41596079	3	3	437	1	0	0	0	0	1	0	0	0	4163	874	31	4	481	4	CYP2A13	19	41596079	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	20464392	41596079	17532904	109	25375											
DMWD	1762	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46289265	46289265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	46289265	G	A	46289265	3	1	437	1	0	0	0	0	1	0	0	0	4595	1232	43	2	547	2	DMWD	19	46289265	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	4693186	46289265	12839718	110	25376											
HRC	3270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49658341	49658341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	49658341	C	T	49658341	3	4	437	1	0	0	0	0	1	0	0	0	7359	864	30	2	1969	2	HRC	19	49658341	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	3369076	49658341	9470642	111	25377											
NAPSA	9476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50862007	50862007	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	50862007	A	-	50862007	7	5	437	1	0	1	0	1	0	0	0	0	10173	275	10	0	200	0	NAPSA	19	50862007	Frame_Shift_Del	DEL	A	TCGA-BQ-5878-01A-11D-1589-08	1203666	50862007	8266976	112	25378											
FPR2	2358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52272650	52272650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	52272650	G	C	52272650	3	2	437	1	0	0	0	0	1	0	0	0	6046	1261	44	4	741	4	FPR2	19	52272650	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1410643	52272650	6856333	113	25379											
LAIR2	3904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55019129	55019129	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	55019129	T	A	55019129	3	1	437	1	0	0	0	0	1	0	0	0	8610	1551	54	5	104	5	LAIR2	19	55019129	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	2746479	55019129	4109854	114	25380											
ZNF417	147687	broad.mit.edu	37	19	58420138	58420138	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	58420138	G	C	58420138	3	2	437	1	0	0	0	0	1	0	0	0	17906	1174	41	4	223	4	ZNF417	19	58420138	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	3401009	58420138	708845	115	25381											
PROCR	10544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33762617	33762617	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	33762617	A	T	33762617	2	4	437	1	0	0	0	0	0	0	0	1	12557	175	7	5		5	PROCR	20	33762617	Silent	SNP	A	TCGA-BQ-5878-01A-11D-1589-08		33762617	29262903	116	25382											
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	45204227	45204227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	45204227	C	A	45204227	3	1	437	1	0	0	0	0	1	0	0	0	14406	594	21	4	507	4	SLC13A3	20	45204227	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	11441610	45204227	17821293	117	25383											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57766279	57766279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	57766279	G	A	57766279	3	1	437	1	0	0	0	0	1	0	0	0	18197	1116	39	1	207	1	ZNF831	20	57766279	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	12562052	57766279	5259241	118	25384											
DIDO1	11083	broad.mit.edu	37	20	61510808	61510808	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	-	61510808	T	-	61510808	7	5	437	1	0	1	0	1	0	0	0	0	4524	1609	56	0	226	0	DIDO1	20	61510808	Frame_Shift_Del	DEL	T	TCGA-BQ-5878-01A-11D-1589-08	3744529	61510808	1514712	119	25385											
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15554081	15554081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	15554081	T	C	15554081	3	2	437	1	0	0	0	0	1	0	0	0	8832	1493	52	3	769	3	LIPI	21	15554081	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08		15554081	32575814	120	25386											
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32301997	32301997	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	32301997	T	G	32301997	2	3	437	1	0	0	0	0	0	0	0	1	4444	1567	55	5		5	DEPDC5	22	32301997	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08		32301997	19002569	121	25387											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50719301	50719302	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	50719302	-	T	50719301	7	5	437	1	0	1	1	0	0	0	0	0	12131	304	11	0	1707	0	PLXNB2	22	50719301	Frame_Shift_Ins	INS	-	TCGA-BQ-5878-01A-11D-1589-08	18417304	50719301	585265	122	25388											
GPKOW	27238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48979068	48979068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	A	48979068	G	A	48979068	3	1	437	1	0	0	0	0	1	0	0	0	6620	1058	37	1	1235	1	GPKOW	23	48979068	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		48979068	106291492	123	25389											
ESX1	80712	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	103499100	103499100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	103499100	C	T	103499100	3	4	437	1	0	0	0	0	1	0	0	0	5265	893	31	1	991	1	ESX1	23	103499100	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	54520032	103499100	51771460	124	25390											
AMOT	154796	hgsc.bcm.edu	37	X	112022638	112022638	+	Missense_Mutation	SNP	A	A	G	rs201619225		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	112022638	A	G	112022638	3	3	437	1	0	0	0	0	1	0	0	0	582	43	2	3	518	3	AMOT	23	112022638	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	8523538	112022638	43247922	125	25391	320	2									
AMOT	154796	hgsc.bcm.edu;broad.mit.edu	37	X	112022644	112022644	+	Missense_Mutation	SNP	A	A	G	rs200107563		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	G	112022644	A	G	112022644	3	3	437	1	0	0	0	0	1	0	0	0	582	43	2	3	524	3	AMOT	23	112022644	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	6	112022644	43247916	126	25392	320	2									
GLUD2	2747	ucsc.edu	37	X	120182123	120182123	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	120182123	A	T	120182123	3	4	437	1	0	0	0	0	1	0	0	0	6484	11	1	5	587	5	GLUD2	23	120182123	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	8159479	120182123	35088437	127	25393											
HS6ST2	90161	hgsc.bcm.edu;broad.mit.edu	37	X	132091225	132091225	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	C	132091225	G	C	132091225	3	2	437	1	0	0	0	0	1	0	0	0	7378	1281	45	4	1395	4	HS6ST2	23	132091225	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	11909102	132091225	23179335	128	25394											
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	154130375	154130375	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	T	154130375	G	T	154130375	2	4	437	1	0	0	0	0	0	0	0	1	5352	1074	38	4		4	F8	23	154130375	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	22039150	154130375	1140185	129	25395											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	79386001	79386001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	A	79386001	G	A	79386001	3	1	438	1	0	0	0	0	1	0	0	0	5086	1203	42	2	768	2	ELTD1	1	79386001	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		79386001	169864620	1	25396											
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156105085	156105085	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	156105085	C	T	156105085	2	4	438	1	0	0	0	0	0	0	0	1	8855	813	29	2		2	LMNA	1	156105085	Silent	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	76719084	156105085	93145536	2	25397											
SUSD4	55061	hgsc.bcm.edu	37	1	223401081	223401081	+	Splice_Site	SNP	C	C	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	G	223401081	C	G	223401081	5	3	438	1	0	0	0	0	0	0	1	0	15422	927	32	4	568	4	SUSD4	1	223401081	Splice_Site	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	67295996	223401081	25849540	3	25398											
SLC5A6	8884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27427384	27427384	+	Missense_Mutation	SNP	G	G	A	rs199587675		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	A	27427384	G	A	27427384	3	1	438	1	0	0	0	0	1	0	0	0	14682	1087	38	1	993	1	SLC5A6	2	27427384	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		27427384	215771989	4	25399											
ACTR1B	10120	broad.mit.edu;bcgsc.ca	37	2	98275011	98275014	+	Frame_Shift_Del	DEL	GAGT	GAGT	-	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	GAGT	GAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	-	98275014	GAGT	-	98275011	7	5	438	1	0	1	0	1	0	0	0	0	210	1174	41	0	618	0	ACTR1B	2	98275011	Frame_Shift_Del	DEL	GAGT	TCGA-BQ-5879-01A-11D-1589-08	70847627	98275011	144924362	5	25400											
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	135815628	135815628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	A	135815628	G	A	135815628	3	1	438	1	0	0	0	0	1	0	0	0	12948	1174	41	2	132	2	RAB3GAP1	2	135815628	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	37540617	135815628	107383745	6	25401											
NEB	4703	hgsc.bcm.edu	37	2	152372972	152372972	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	A	152372972	C	A	152372972	5	1	438	1	0	0	0	0	0	0	1	0	10309	521	18	4	2775	4	NEB	2	152372972	Splice_Site	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	16557344	152372972	90826401	7	25402											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179429062	179429062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	179429062	G	T	179429062	3	4	438	1	0	0	0	0	1	0	0	0	16747	1319	46	4	26330	4	TTN	2	179429062	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	27056090	179429062	63770311	8	25403											
PDCD1	5133	hgsc.bcm.edu	37	2	242794400	242794400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	G	242794400	A	G	242794400	3	3	438	1	0	0	0	0	1	0	0	0	11622	188	7	3	336	3	PDCD1	2	242794400	Missense_Mutation	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	63365338	242794400	404973	9	25404											
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu	37	3	52813483	52813483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	G	52813483	A	G	52813483	3	3	438	1	0	0	0	0	1	0	0	0	7910	159	6	3	464	3	ITIH1	3	52813483	Missense_Mutation	SNP	A	TCGA-BQ-5879-01A-11D-1589-08		52813483	145208947	10	25405											
CP	1356	hgsc.bcm.edu;broad.mit.edu	37	3	148916162	148916162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	A	148916162	C	A	148916162	3	1	438	1	0	0	0	0	1	0	0	0	3789	594	21	4	1536	4	CP	3	148916162	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	96102679	148916162	49106268	11	25406											
ECT2	1894	hgsc.bcm.edu	37	3	172520417	172520417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	G	172520417	A	G	172520417	3	3	438	1	0	0	0	0	1	0	0	0	4903	304	11	3	1892	3	ECT2	3	172520417	Missense_Mutation	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	23604255	172520417	25502013	12	25407											
FYTTD1	84248	broad.mit.edu;bcgsc.ca	37	3	197501076	197501076	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	C	197501076	T	C	197501076	2	2	438	1	0	0	0	0	0	0	0	1	6134	1538	54	3		3	FYTTD1	3	197501076	Silent	SNP	T	TCGA-BQ-5879-01A-11D-1589-08	24980659	197501076	521354	13	25408											
ADH4	127	bcgsc.ca	37	4	100052684	100052684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	100052684	G	T	100052684	3	4	438	1	0	0	0	0	1	0	0	0	310	1000	35	4	344	4	ADH4	4	100052684	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		100052684	91101592	14	25409											
PRSS12	8492	hgsc.bcm.edu	37	4	119273492	119273492	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	119273492	A	T	119273492	2	4	438	1	0	0	0	0	0	0	0	1	12625	291	11	5		5	PRSS12	4	119273492	Silent	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	19220808	119273492	71880784	15	25410											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1094290	1094290	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	1094290	C	T	1094290	2	4	438	1	0	0	0	0	0	0	0	1	14401	842	30	2		2	SLC12A7	5	1094290	Silent	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		1094290	179820970	16	25411											
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136314458	136314458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	136314458	C	T	136314458	3	4	438	1	0	0	0	0	1	0	0	0	15091	652	23	1	118	1	SPOCK1	5	136314458	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	135220168	136314458	44600802	17	25412											
PCDHA12	56137	hgsc.bcm.edu	37	5	140257068	140257068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	C	140257068	G	C	140257068	3	2	438	1	0	0	0	0	1	0	0	0	11529	1175	41	4	2013	4	PCDHA12	5	140257068	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	3942610	140257068	40658192	18	25413											
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99142345	99142345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	99142345	C	T	99142345	3	4	438	1	0	0	0	0	1	0	0	0	12258	739	26	2	640	2	POP1	8	99142345	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		99142345	47221677	19	25414											
PUF60	22827	broad.mit.edu	37	8	144898885	144898885	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	A	144898885	G	A	144898885	2	1	438	1	0	0	0	0	0	0	0	1	12837	1074	38	1		1	PUF60	8	144898885	Silent	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	45756540	144898885	1465137	20	25415											
C9orf66	157983	hgsc.bcm.edu	37	9	215109	215109	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	215109	G	T	215109	2	4	438	1	0	0	0	0	0	0	0	1	2492	1045	37	4		4	C9orf66	9	215109	Silent	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		215109	140998322	21	25416											
ST8SIA6	338596	broad.mit.edu	37	10	17401582	17401582	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	A	17401582	T	A	17401582	3	1	438	1	0	0	0	0	1	0	0	0	15248	1638	57	5	908	5	ST8SIA6	10	17401582	Missense_Mutation	SNP	T	TCGA-BQ-5879-01A-11D-1589-08		17401582	118133165	22	25417											
NELL2	4753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	45097517	45097517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	C	45097517	T	C	45097517	3	2	438	1	0	0	0	0	1	0	0	0	10341	1638	57	3	1176	3	NELL2	12	45097517	Missense_Mutation	SNP	T	TCGA-BQ-5879-01A-11D-1589-08		45097517	88754378	23	25418											
PABPC3	5042	ucsc.edu	37	13	25672007	25672007	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	G	25672007	A	G	25672007	2	3	438	1	0	0	0	0	0	0	0	1	11372	417	15	3		3	PABPC3	13	25672007	Silent	SNP	A	TCGA-BQ-5879-01A-11D-1589-08		25672007	89497871	24	25419											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33905537	33905537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	33905537	G	T	33905537	3	4	438	1	0	0	0	0	1	0	0	0	13783	1232	43	4	2392	4	RYR3	15	33905537	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		33905537	68625855	25	25420											
SF3B3	23450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70595650	70595650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	70595650	C	T	70595650	3	4	438	1	0	0	0	0	1	0	0	0	14165	855	30	2	2313	2	SF3B3	16	70595650	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		70595650	19759103	26	25421											
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5314095	5314095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	5314095	C	T	5314095	3	4	438	1	0	0	0	0	1	0	0	0	10778	536	19	1	1673	1	NUP88	17	5314095	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		5314095	75881115	27	25422											
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10554908	10554908	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	A	10554908	G	A	10554908	2	1	438	1	0	0	0	0	0	0	0	1	10043	958	34	2		2	MYH3	17	10554908	Silent	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	5240813	10554908	70640302	28	25423											
DCAF7	10238	broad.mit.edu;bcgsc.ca	37	17	61628109	61628109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	61628109	G	T	61628109	3	4	438	1	0	0	0	0	1	0	0	0	4277	1357	47	4	73	4	DCAF7	17	61628109	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	51073201	61628109	19567101	29	25424											
GH1	2688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61995168	61995168	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	61995168	G	T	61995168	2	4	438	1	0	0	0	0	0	0	0	1	6374	929	33	4		4	GH1	17	61995168	Silent	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	367059	61995168	19200042	30	25425											
LSM14A	26065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	34710448	34710449	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	-	34710449	AG	-	34710448	7	5	438	1	0	1	0	1	0	0	0	0	9061	180	7	0	960	0	LSM14A	19	34710448	Frame_Shift_Del	DEL	AG	TCGA-BQ-5879-01A-11D-1589-08		34710448	24418535	31	25426											
RYR1	6261	broad.mit.edu;bcgsc.ca	37	19	38948197	38948197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	38948197	G	T	38948197	3	4	438	1	0	0	0	0	1	0	0	0	13781	942	33	4	1918	4	RYR1	19	38948197	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	4237749	38948197	20180786	32	25427											
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52091521	52091521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	C	52091521	T	C	52091521	3	2	438	1	0	0	0	0	1	0	0	0	17757	1609	56	3	1951	3	ZNF175	19	52091521	Missense_Mutation	SNP	T	TCGA-BQ-5879-01A-11D-1589-08	13143324	52091521	7037462	33	25428											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2998529	2998529	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	2998529	C	T	2998529	2	4	438	1	0	0	0	0	0	0	0	1	12808	813	29	2		2	PTPRA	20	2998529	Silent	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		2998529	60026991	34	25429											
ASXL1	171023	bcgsc.ca	37	20	31024236	31024236	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	31024236	G	T	31024236	4	4	438	1	0	0	0	0	0	1	0	0	1066	1291	45	4	3777	4	ASXL1	20	31024236	Nonsense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	28025707	31024236	32001284	35	25430											
R3HDML	140902	hgsc.bcm.edu	37	20	42969909	42969909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	G	42969909	A	G	42969909	3	3	438	1	0	0	0	0	1	0	0	0	12902	188	7	3	341	3	R3HDML	20	42969909	Missense_Mutation	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	11945673	42969909	20055611	36	25431											
SCO2	9997	broad.mit.edu	37	22	50962803	50962803	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	G	50962803	C	G	50962803	3	3	438	1	0	0	0	0	1	0	0	0	13945	681	24	4	766	4	SCO2	22	50962803	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		50962803	341763	37	25432											
SSX1	6756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48123289	48123289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	A	48123289	G	A	48123289	3	1	438	1	0	0	0	0	1	0	0	0	15215	1058	37	1	421	1	SSX1	23	48123289	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		48123289	107147271	38	25433											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	109694572	109694572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	C	109694572	T	C	109694572	3	2	438	1	0	0	0	0	1	0	0	0	13287	1667	58	3	729	3	RGAG1	23	109694572	Missense_Mutation	SNP	T	TCGA-BQ-5879-01A-11D-1589-08	61571283	109694572	45575988	39	25434											
USP26	83844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	132160221	132160221	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	C	132160221	A	C	132160221	2	2	438	1	0	0	0	0	0	0	0	1	17069	175	7	5		5	USP26	23	132160221	Silent	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	22465649	132160221	23110339	40	25435											
NLGN4Y	22829	hgsc.bcm.edu	37	Y	16952767	16952767	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	T	16952767	C	T	16952767	2	4	438	1	0	0	0	0	0	0	0	1	10472	668	24	2		2	NLGN4Y	24	16952767	Silent	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		16952767	42420799	41	25436											
AGRN	375790	hgsc.bcm.edu	37	1	984366	984366	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	984366	C	T	984366	2	4	439	1	0	0	0	0	0	0	0	1	397	796	28	2		2	AGRN	1	984366	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		984366	248266255	1	25437											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27106982	27106982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	27106982	T	C	27106982	3	2	439	1	0	0	0	0	1	0	0	0	913	1783	62	3	6671	3	ARID1A	1	27106982	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	26122616	27106982	222143639	2	25438											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39775962	39775962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	39775962	C	A	39775962	3	1	439	1	0	0	0	0	1	0	0	0	9151	681	24	4	3071	4	MACF1	1	39775962	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	12668980	39775962	209474659	3	25439											
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41976755	41976755	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	41976755	G	C	41976755	2	2	439	1	0	0	0	0	0	0	0	1	7195	1335	47	4		4	HIVEP3	1	41976755	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	2200793	41976755	207273866	4	25440											
HECTD3	79654	hgsc.bcm.edu	37	1	45476719	45476719	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	45476719	G	A	45476719	2	1	439	1	0	0	0	0	0	0	0	1	7048	991	35	2		2	HECTD3	1	45476719	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	3499964	45476719	203773902	5	25441											
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	107937850	107937850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	107937850	C	A	107937850	3	1	439	1	0	0	0	0	1	0	0	0	10711	565	20	4	972	4	NTNG1	1	107937850	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	62461131	107937850	141312771	6	25442											
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu	37	1	117131439	117131439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	117131439	C	T	117131439	3	4	439	1	0	0	0	0	1	0	0	0	7608	893	31	1	1283	1	IGSF3	1	117131439	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	9193589	117131439	132119182	7	25443											
SELL	6402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169677647	169677647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	169677647	C	T	169677647	3	4	439	1	0	0	0	0	1	0	0	0	14029	710	25	2	763	2	SELL	1	169677647	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	52546208	169677647	79572974	8	25444											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27459639	27459639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	27459639	C	A	27459639	3	1	439	1	0	0	0	0	1	0	0	0	2567	739	26	4	4443	4	CAD	2	27459639	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		27459639	215739734	9	25445											
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	98744846	98744846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	98744846	G	T	98744846	3	4	439	1	0	0	0	0	1	0	0	0	17253	1174	41	4	865	4	VWA3B	2	98744846	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	71285207	98744846	144454527	10	25446											
BUB1	699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	111399713	111399713	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	111399713	G	A	111399713	4	1	439	1	0	0	0	0	0	1	0	0	1572	1386	48	2	835	2	BUB1	2	111399713	Nonsense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	12654867	111399713	131799660	11	25447											
THSD7B	80731	broad.mit.edu	37	2	138208579	138208579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	138208579	G	T	138208579	3	4	439	1	0	0	0	0	1	0	0	0	15892	1174	41	4	3085	4	THSD7B	2	138208579	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	26808866	138208579	104990794	12	25448											
PECR	55825	ucsc.edu	37	2	216908665	216908665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	216908665	C	A	216908665	3	1	439	1	0	0	0	0	1	0	0	0	11724	623	22	4	131	4	PECR	2	216908665	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	78700086	216908665	26290708	13	25449											
ACAA1	30	broad.mit.edu;bcgsc.ca	37	3	38167081	38167092	+	In_Frame_Del	DEL	TGAGCAGCGTGA	TGAGCAGCGTGA	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	TGAGCAGCGTGA	TGAGCAGCGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	-	38167092	TGAGCAGCGTGA	-	38167081	7	5	439	1	0	1	0	1	0	0	0	0	104	1812	63	0	108	0	ACAA1	3	38167081	In_Frame_Del	DEL	TGAGCAGCGTGA	TCGA-BQ-5880-01A-11D-1589-08		38167081	159855349	14	25450											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52398951	52398951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	52398951	A	G	52398951	3	3	439	1	0	0	0	0	1	0	0	0	4599	217	8	3	5564	3	DNAH1	3	52398951	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	14231870	52398951	145623479	15	25451											
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57898917	57898917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	57898917	G	T	57898917	3	4	439	1	0	0	0	0	1	0	0	0	14762	1319	46	4	2021	4	SLMAP	3	57898917	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	5499966	57898917	140123513	16	25452											
GXYLT2	727936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	72957696	72957696	+	Missense_Mutation	SNP	G	G	A	rs142024018		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	72957696	G	A	72957696	3	1	439	1	0	0	0	0	1	0	0	0	6911	1059	37	1	460	1	GXYLT2	3	72957696	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	15058779	72957696	125064734	17	25453											
GBE1	2632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	81698998	81698998	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	-	81698998	A	-	81698998	7	5	439	1	0	1	0	1	0	0	0	0	6277	146	6	0	1656	0	GBE1	3	81698998	Frame_Shift_Del	DEL	A	TCGA-BQ-5880-01A-11D-1589-08	8741302	81698998	116323432	18	25454											
COL6A5	256076	broad.mit.edu	37	3	130174495	130174495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	130174495	G	A	130174495	3	1	439	1	0	0	0	0	1	0	0	0	3704	1319	46	2	6917	2	COL6A5	3	130174495	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	48475497	130174495	67847935	19	25455											
HTT	3064	broad.mit.edu	37	4	3124641	3124641	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	3124641	T	C	3124641	2	2	439	1	0	0	0	0	0	0	0	1	7464	1567	55	3		3	HTT	4	3124641	Silent	SNP	T	TCGA-BQ-5880-01A-11D-1589-08		3124641	188029635	20	25456											
NFXL1	152518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	47901107	47901107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	47901107	G	A	47901107	3	1	439	1	0	0	0	0	1	0	0	0	10395	1377	48	2	1946	2	NFXL1	4	47901107	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	44776466	47901107	143253169	21	25457											
SLC4A4	8671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	72429512	72429512	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	72429512	T	A	72429512	2	1	439	1	0	0	0	0	0	0	0	1	14669	1567	55	5		5	SLC4A4	4	72429512	Silent	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	24528405	72429512	118724764	22	25458											
TBCK	93627	broad.mit.edu	37	4	107163639	107163639	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	107163639	G	A	107163639	2	1	439	1	0	0	0	0	0	0	0	1	15648	1195	42	2		2	TBCK	4	107163639	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	34734127	107163639	83990637	23	25459											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	139193812	139193812	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	-	139193812	G	-	139193812	7	5	439	1	0	1	0	1	0	0	0	0	12657	991	35	0	889	0	PSD2	5	139193812	Frame_Shift_Del	DEL	G	TCGA-BQ-5880-01A-11D-1589-08		139193812	41721448	24	25460											
SLC26A8	116369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35949921	35949921	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	35949921	C	T	35949921	2	4	439	1	0	0	0	0	0	0	0	1	14536	755	27	1		1	SLC26A8	6	35949921	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		35949921	135165146	25	25461											
RBAK	57786	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	5104736	5104736	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	5104736	A	T	5104736	3	4	439	1	0	0	0	0	1	0	0	0	13113	304	11	5	1663	5	RBAK	7	5104736	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08		5104736	154033927	26	25462											
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21468915	21468915	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	21468915	G	A	21468915	2	1	439	1	0	0	0	0	0	0	0	1	14979	962	34	2		2	SP4	7	21468915	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	16364179	21468915	137669748	27	25463											
SAMD9L	219285	broad.mit.edu	37	7	92761639	92761639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	92761639	A	G	92761639	3	3	439	1	0	0	0	0	1	0	0	0	13840	72	3	3	1112	3	SAMD9L	7	92761639	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	71292724	92761639	66377024	28	25464											
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92932848	92932848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	92932848	A	G	92932848	3	3	439	1	0	0	0	0	1	0	0	0	2769	217	8	3	1546	3	CCDC132	7	92932848	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	171209	92932848	66205815	29	25465											
STAG3	10734	broad.mit.edu;bcgsc.ca	37	7	99779767	99779767	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	-	99779767	T	-	99779767	7	5	439	1	0	1	0	1	0	0	0	0	15256	1432	50	0	177	0	STAG3	7	99779767	Frame_Shift_Del	DEL	T	TCGA-BQ-5880-01A-11D-1589-08	6846919	99779767	59358896	30	25466											
SH2B2	10603	broad.mit.edu	37	7	101943829	101943829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	101943829	G	A	101943829	3	1	439	1	0	0	0	0	1	0	0	0	14241	1175	41	2	130	2	SH2B2	7	101943829	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	2164062	101943829	57194834	31	25467											
AKR1B1	231	broad.mit.edu	37	7	134133231	134133231	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	134133231	T	C	134133231	2	2	439	1	0	0	0	0	0	0	0	1	466	1451	51	3		3	AKR1B1	7	134133231	Silent	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	32189402	134133231	25005432	32	25468											
GPR124	25960	hgsc.bcm.edu	37	8	37698794	37698794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	37698794	A	G	37698794	3	3	439	1	0	0	0	0	1	0	0	0	6645	179	7	3	2991	3	GPR124	8	37698794	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08		37698794	108665228	33	25469											
PREX2	80243	broad.mit.edu;bcgsc.ca	37	8	69046477	69046477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	69046477	T	C	69046477	3	2	439	1	0	0	0	0	1	0	0	0	12487	1609	56	3	4305	3	PREX2	8	69046477	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	31347683	69046477	77317545	34	25470											
FAM135B	51059	broad.mit.edu	37	8	139164987	139164987	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	139164987	C	G	139164987	3	3	439	1	0	0	0	0	1	0	0	0	5453	912	32	4	2521	4	FAM135B	8	139164987	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	70118510	139164987	7199035	35	25471											
UBE2R2	54926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33900238	33900238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	33900238	T	A	33900238	3	1	439	1	0	0	0	0	1	0	0	0	16883	1783	62	5	341	5	UBE2R2	9	33900238	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08		33900238	107313193	36	25472											
RGP1	9827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35751270	35751270	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	35751270	G	A	35751270	2	1	439	1	0	0	0	0	0	0	0	1	13297	991	35	2		2	RGP1	9	35751270	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	1851032	35751270	105462161	37	25473											
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134020018	134020018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	134020018	G	T	134020018	3	4	439	1	0	0	0	0	1	0	0	0	10769	1174	41	4	1692	4	NUP214	9	134020018	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	98268748	134020018	7193413	38	25474											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16918967	16918967	+	Missense_Mutation	SNP	G	G	A	rs143741363		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	16918967	G	A	16918967	3	1	439	1	0	0	0	0	1	0	0	0	4053	1116	39	1	1880	1	CUBN	10	16918967	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08		16918967	118615780	39	25475											
ACADSB	36	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124793900	124793900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	124793900	C	T	124793900	3	4	439	1	0	0	0	0	1	0	0	0	115	913	32	2	77	2	ACADSB	10	124793900	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	107874933	124793900	10740847	40	25476											
MUC2	4583	hgsc.bcm.edu	37	11	1092643	1092643	+	Missense_Mutation	SNP	A	A	C	rs149562922		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	1092643	A	C	1092643	3	2	439	1	0	0	0	0	1	0	0	0	9982	43	2	5	4580	5	MUC2	11	1092643	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08		1092643	133913873	41	25477			1	47		4	4	768	N	T_C_A	1.243121e-09
MUC2	4583	hgsc.bcm.edu	37	11	1092795	1092795	+	Silent	SNP	T	T	A	rs12786761		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	1092795	T	A	1092795	2	1	439	1	0	0	0	0	0	0	0	1	9982	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	152	1092795	133913721	42	25478			1	47		4	4	768	N	T_C_A	1.243121e-09
MUC2	4583	hgsc.bcm.edu	37	11	1092813	1092813	+	Silent	SNP	C	C	T	rs12577898		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	1092813	C	T	1092813	2	4	439	1	0	0	0	0	0	0	0	1	9982	581	21	2		2	MUC2	11	1092813	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	18	1092813	133913703	43	25479			1	47		4	4	768	N	T_C_A	1.243121e-09
MUC2	4583	hgsc.bcm.edu	37	11	1093410	1093410	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	1093410	C	A	1093410	2	1	439	1	0	0	0	0	0	0	0	1	9982	581	21	4		4	MUC2	11	1093410	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	597	1093410	133913106	44	25480			1	47		4	4	768	N	T_C_A	1.243121e-09
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	27390335	27390336	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	27390336	-	A	27390335	7	5	439	1	0	1	1	0	0	0	0	0	8763	1403	49	0	924	0	LGR4	11	27390335	Frame_Shift_Ins	INS	-	TCGA-BQ-5880-01A-11D-1589-08	26296925	27390335	107616181	45	25481											
OR8J3	81168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55904466	55904466	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	55904466	C	T	55904466	2	4	439	1	0	0	0	0	0	0	0	1	11249	755	27	1		1	OR8J3	11	55904466	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	28514131	55904466	79102050	46	25482											
DPAGT1	1798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118971040	118971040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	118971040	C	T	118971040	3	4	439	1	0	0	0	0	1	0	0	0	4712	739	26	2	675	2	DPAGT1	11	118971040	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	63066574	118971040	16035476	47	25483											
PRB4	5545	broad.mit.edu;bcgsc.ca	37	12	11461597	11461597	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	-	11461597	C	-	11461597	7	5	439	1	0	1	0	1	0	0	0	0	12455	855	30	0	427	0	PRB4	12	11461597	Frame_Shift_Del	DEL	C	TCGA-BQ-5880-01A-11D-1589-08		11461597	122390298	48	25484											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49443557	49443558	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	-	49443558	AT	-	49443557	7	5	439	1	0	1	0	1	0	0	0	0	9628	98	4	0	12975	0	MLL2	12	49443557	Frame_Shift_Del	DEL	AT	TCGA-BQ-5880-01A-11D-1589-08	37981960	49443557	84408338	49	25485											
DGKA	1606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56346149	56346149	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	56346149	C	G	56346149	3	3	439	1	0	0	0	0	1	0	0	0	4467	883	31	4	1751	4	DGKA	12	56346149	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	6902592	56346149	77505746	50	25486											
PHLDA1	22822	hgsc.bcm.edu	37	12	76424647	76424647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	76424647	A	G	76424647	3	3	439	1	0	0	0	0	1	0	0	0	11855	275	10	3	334	3	PHLDA1	12	76424647	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	20078498	76424647	57427248	51	25487											
FGD6	55785	broad.mit.edu	37	12	95479666	95479666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	95479666	C	A	95479666	3	1	439	1	0	0	0	0	1	0	0	0	5844	855	30	4	307	4	FGD6	12	95479666	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	19055019	95479666	38372229	52	25488											
WSCD2	9671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	108589975	108589975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	108589975	G	C	108589975	3	2	439	1	0	0	0	0	1	0	0	0	17419	933	33	4	368	4	WSCD2	12	108589975	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	13110309	108589975	25261920	53	25489											
ZC3H13	23091	broad.mit.edu;ucsc.edu	37	13	46549686	46549686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	46549686	C	A	46549686	3	1	439	1	0	0	0	0	1	0	0	0	17577	884	31	4	2518	4	ZC3H13	13	46549686	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		46549686	68620192	54	25490											
SOX1	6656	hgsc.bcm.edu	37	13	112722435	112722435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	112722435	A	G	112722435	3	3	439	1	0	0	0	0	1	0	0	0	14953	217	8	3	465	3	SOX1	13	112722435	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	66172749	112722435	2447443	55	25491											
MGAT2	4247	broad.mit.edu	37	14	50089217	50089220	+	Frame_Shift_Del	DEL	CTAA	CTAA	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	CTAA	CTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	-	50089220	CTAA	-	50089217	7	5	439	1	0	1	0	1	0	0	0	0	9550	912	32	0	1233	0	MGAT2	14	50089217	Frame_Shift_Del	DEL	CTAA	TCGA-BQ-5880-01A-11D-1589-08		50089217	57260323	56	25492											
RDH11	51109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68157017	68157017	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	68157017	G	A	68157017	2	1	439	1	0	0	0	0	0	0	0	1	13203	1074	38	1		1	RDH11	14	68157017	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	18067800	68157017	39192523	57	25493											
CYFIP1	23191	broad.mit.edu	37	15	22929873	22929873	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	-	22929873	A	-	22929873	7	5	439	1	0	1	0	1	0	0	0	0	4139	246	9	0	565	0	CYFIP1	15	22929873	Frame_Shift_Del	DEL	A	TCGA-BQ-5880-01A-11D-1589-08		22929873	79601519	58	25494											
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	56387238	56387238	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	56387238	C	G	56387238	3	3	439	1	0	0	0	0	1	0	0	0	13281	796	28	4	1698	4	RFX7	15	56387238	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	33457365	56387238	46144154	59	25495											
HERC1	8925	hgsc.bcm.edu	37	15	63947971	63947971	+	Missense_Mutation	SNP	T	T	C	rs202195874		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	63947971	T	C	63947971	3	2	439	1	0	0	0	0	1	0	0	0	7064	1754	61	3	4647	3	HERC1	15	63947971	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	7560733	63947971	38583421	60	25496											
RPGRIP1L	23322	broad.mit.edu	37	16	53730090	53730090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	53730090	G	A	53730090	3	1	439	1	0	0	0	0	1	0	0	0	13563	1203	42	2	3844	2	RPGRIP1L	16	53730090	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08		53730090	36624663	61	25497											
CES1	1066	hgsc.bcm.edu	37	16	55866949	55866949	+	Missense_Mutation	SNP	T	T	C	rs114788146		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	55866949	T	C	55866949	3	2	439	1	0	0	0	0	1	0	0	0	3271	1406	49	3	1743	3	CES1	16	55866949	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	2136859	55866949	34487804	62	25498											
DNAH2	146754	broad.mit.edu	37	17	7696416	7696416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	7696416	C	T	7696416	3	4	439	1	0	0	0	0	1	0	0	0	4604	739	26	2	7648	2	DNAH2	17	7696416	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		7696416	73498794	63	25499											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80041413	80041413	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	80041413	A	C	80041413	3	2	439	1	0	0	0	0	1	0	0	0	5690	72	3	5	2266	5	FASN	17	80041413	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	72344997	80041413	1153797	64	25500											
LAMA1	284217	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	7025998	7025998	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	7025998	A	G	7025998	2	3	439	1	0	0	0	0	0	0	0	1	8612	291	11	3		3	LAMA1	18	7025998	Silent	SNP	A	TCGA-BQ-5880-01A-11D-1589-08		7025998	71051250	65	25501											
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74622686	74622686	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	74622686	C	T	74622686	2	4	439	1	0	0	0	0	0	0	0	1	17801	709	25	2		2	ZNF236	18	74622686	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	67596688	74622686	3454562	66	25502											
ZNF266	10781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9524367	9524367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	9524367	T	G	9524367	3	3	439	1	0	0	0	0	1	0	0	0	17817	1821	63	5	419	5	ZNF266	19	9524367	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08		9524367	49604616	67	25503											
ZNF561	93134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9721627	9721627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	9721627	G	A	9721627	3	1	439	1	0	0	0	0	1	0	0	0	18004	942	33	2	754	2	ZNF561	19	9721627	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	197260	9721627	49407356	68	25504											
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17311587	17311587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	17311587	G	T	17311587	3	4	439	1	0	0	0	0	1	0	0	0	10092	933	33	4	4610	4	MYO9B	19	17311587	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	7589960	17311587	41817396	69	25505											
EMILIN3	90187	broad.mit.edu	37	20	39993715	39993715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	39993715	G	A	39993715	3	1	439	1	0	0	0	0	1	0	0	0	5097	1115	39	1	2062	1	EMILIN3	20	39993715	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08		39993715	23031805	70	25506											
PREX1	57580	ucsc.edu;bcgsc.ca	37	20	47271873	47271873	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	A	47271873	G	A	47271873	4	1	439	1	0	0	0	0	0	1	0	0	12486	1357	47	2	2903	2	PREX1	20	47271873	Nonsense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	7278158	47271873	15753647	71	25507											
KCNQ2	3785	broad.mit.edu	37	20	62073832	62073832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	62073832	A	G	62073832	3	3	439	1	0	0	0	0	1	0	0	0	8090	246	9	3	1991	3	KCNQ2	20	62073832	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	14801959	62073832	951688	72	25508											
BAGE3	85318	hgsc.bcm.edu;broad.mit.edu	37	21	11097627	11097627	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	C	11097627	G	C	11097627	3	2	439	1	0	0	0	0	1	0	0	0	1293	1203	42	4	306	4	BAGE3	21	11097627	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08		11097627	37032268	73	25509											
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43505425	43505425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	43505425	C	T	43505425	3	4	439	1	0	0	0	0	1	0	0	0	16992	855	30	2	520	2	UMODL1	21	43505425	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	32407798	43505425	4624470	74	25510											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26400727	26400727	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	26400727	C	T	26400727	4	4	439	1	0	0	0	0	0	1	0	0	10073	711	25	2	6538	2	MYO18B	22	26400727	Nonsense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		26400727	24903839	75	25511											
MKL1	57591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	40814880	40814880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	40814880	C	T	40814880	3	4	439	1	0	0	0	0	1	0	0	0	9608	768	27	1	1249	1	MKL1	22	40814880	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	14414153	40814880	10489686	76	25512											
CLCN4	1183	broad.mit.edu	37	X	10162970	10162970	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	10162970	C	G	10162970	3	3	439	1	0	0	0	0	1	0	0	0	3467	874	31	4	274	4	CLCN4	23	10162970	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		10162970	145107590	77	25513											
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	43702915	43702915	+	Splice_Site	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	G	43702915	C	G	43702915	5	3	439	1	0	0	0	0	0	0	1	0	9233	521	18	4	1476	4	MAOB	23	43702915	Splice_Site	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	33539945	43702915	111567645	78	25514											
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53407985	53407985	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	T	53407985	A	T	53407985	3	4	439	1	0	0	0	0	1	0	0	0	14794	275	10	5	252	5	SMC1A	23	53407985	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	9705070	53407985	101862575	79	25515											
C1orf86	199990	broad.mit.edu	37	1	2125303	2125303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	2125303	G	A	2125303	3	1	440	1	0	0	0	0	1	0	0	0	2065	1232	43	2	545	2	C1orf86	1	2125303	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08		2125303	247125318	1	25516											
ACOT7	11332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6399500	6399500	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	6399500	G	T	6399500	2	4	440	1	0	0	0	0	0	0	0	1	155	1164	41	4		4	ACOT7	1	6399500	Silent	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	4274197	6399500	242851121	2	25517											
HES2	54626	hgsc.bcm.edu	37	1	6479040	6479040	+	Missense_Mutation	SNP	G	G	A	rs2235687		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	6479040	G	A	6479040	3	1	440	1	0	0	0	0	1	0	0	0	7073	1232	43	2	110	2	HES2	1	6479040	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	79540	6479040	242771581	3	25518											
SSX2IP	117178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85124036	85124036	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	85124036	A	T	85124036	3	4	440	1	0	0	0	0	1	0	0	0	15216	101	4	5	825	5	SSX2IP	1	85124036	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	78644996	85124036	164126585	4	25519											
MYBPHL	343263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109839700	109839700	+	Missense_Mutation	SNP	G	G	C	rs200935635	alternate_allele	TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	109839700	G	C	109839700	3	2	440	1	0	0	0	0	1	0	0	0	10022	1145	40	4	542	4	MYBPHL	1	109839700	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	24715664	109839700	139410921	5	25520											
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156236156	156236156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	156236156	T	C	156236156	3	2	440	1	0	0	0	0	1	0	0	0	14809	1609	56	3	1823	3	SMG5	1	156236156	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	46396456	156236156	93014465	6	25521											
POMC	5443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25387619	25387619	+	Missense_Mutation	SNP	C	C	T	rs146551109		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	25387619	C	T	25387619	3	4	440	1	0	0	0	0	1	0	0	0	12249	768	27	1	788	1	POMC	2	25387619	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		25387619	217811754	7	25522											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32656054	32656054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	32656054	A	C	32656054	3	2	440	1	0	0	0	0	1	0	0	0	1438	69	3	5	3190	5	BIRC6	2	32656054	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	7268435	32656054	210543319	8	25523											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098956	178098956	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	178098956	A	C	178098956	3	2	440	1	0	0	0	0	1	0	0	0	10375	72	3	5	1744	5	NFE2L2	2	178098956	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	145442902	178098956	65100417	9	25524											
AGPS	8540	hgsc.bcm.edu;broad.mit.edu	37	2	178301498	178301498	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	178301498	T	G	178301498	3	3	440	1	0	0	0	0	1	0	0	0	394	1606	56	5	462	5	AGPS	2	178301498	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	202542	178301498	64897875	10	25525											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182786760	182786760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	182786760	G	C	182786760	3	2	440	1	0	0	0	0	1	0	0	0	15195	1174	41	4	3358	4	SSFA2	2	182786760	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	4485262	182786760	60412613	11	25526											
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220072989	220072989	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	220072989	T	G	220072989	3	3	440	1	0	0	0	0	1	0	0	0	17640	1435	50	5	464	5	ZFAND2B	2	220072989	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	37286229	220072989	23126384	12	25527											
UGT1A3	54659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	234637943	234637943	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	234637943	G	A	234637943	2	1	440	1	0	0	0	0	0	0	0	1	16958	991	35	2		2	UGT1A3	2	234637943	Silent	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	14564954	234637943	8561430	13	25528											
ASB1	51665	broad.mit.edu	37	2	239344354	239344354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	239344354	G	A	239344354	3	1	440	1	0	0	0	0	1	0	0	0	1013	1087	38	1	204	1	ASB1	2	239344354	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	4706411	239344354	3855019	14	25529											
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	25651158	25651158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	25651158	A	C	25651158	3	2	440	1	0	0	0	0	1	0	0	0	16378	101	4	5	1080	5	TOP2B	3	25651158	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08		25651158	172371272	15	25530											
CCDC58	131076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122102042	122102042	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	122102042	A	G	122102042	2	3	440	1	0	0	0	0	0	0	0	1	2830	157	6	3		3	CCDC58	3	122102042	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	96450884	122102042	75920388	16	25531											
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138409857	138409857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	138409857	A	G	138409857	3	3	440	1	0	0	0	0	1	0	0	0	11921	420	15	3	1229	3	PIK3CB	3	138409857	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	16307815	138409857	59612573	17	25532											
PDE6B	5158	hgsc.bcm.edu;broad.mit.edu	37	4	619837	619837	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	619837	A	C	619837	3	2	440	1	0	0	0	0	1	0	0	0	11653	159	6	5	424	5	PDE6B	4	619837	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08		619837	190534439	18	25533											
CMYA5	202333	hgsc.bcm.edu	37	5	79032748	79032748	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	79032748	T	C	79032748	2	2	440	1	0	0	0	0	0	0	0	1	3592	1509	53	3		3	CMYA5	5	79032748	Silent	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		79032748	101882512	19	25534											
CYFIP2	26999	broad.mit.edu	37	5	156819902	156819902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	156819902	C	T	156819902	3	4	440	1	0	0	0	0	1	0	0	0	4140	739	26	2	3774	2	CYFIP2	5	156819902	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	77787154	156819902	24095358	20	25535											
SCAND3	114821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	28543371	28543371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	28543371	C	A	28543371	3	1	440	1	0	0	0	0	1	0	0	0	13889	565	20	4	2874	4	SCAND3	6	28543371	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		28543371	142571696	21	25536											
ZNF451	26036	hgsc.bcm.edu	37	6	56989646	56989646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	56989646	A	G	56989646	3	3	440	1	0	0	0	0	1	0	0	0	17934	412	15	3	315	3	ZNF451	6	56989646	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	28446275	56989646	114125421	22	25537											
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1535858	1535858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	1535858	T	C	1535858	3	2	440	1	0	0	0	0	1	0	0	0	7782	1464	51	3	5075	3	INTS1	7	1535858	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		1535858	157602805	23	25538											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	121668665	121668665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	121668665	C	A	121668665	3	1	440	1	0	0	0	0	1	0	0	0	12827	855	30	4	5102	4	PTPRZ1	7	121668665	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	120132807	121668665	37469998	24	25539											
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48308957	48308957	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	48308957	G	C	48308957	3	2	440	1	0	0	0	0	1	0	0	0	8164	943	33	4	569	4	KIAA0146	8	48308957	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08		48308957	98055065	25	25540											
FER1L6	654463	ucsc.edu;bcgsc.ca	37	8	125074167	125074167	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	125074167	T	A	125074167	3	1	440	1	0	0	0	0	1	0	0	0	5822	1635	57	5	3316	5	FER1L6	8	125074167	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	76765210	125074167	21289855	26	25541											
SVEP1	79987	hgsc.bcm.edu	37	9	113259109	113259109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	113259109	T	C	113259109	3	2	440	1	0	0	0	0	1	0	0	0	15432	1812	63	3	9093	3	SVEP1	9	113259109	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		113259109	27954322	27	25542											
MUC2	4583	hgsc.bcm.edu	37	11	1092795	1092795	+	Silent	SNP	T	T	A	rs12786761		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	1092795	T	A	1092795	2	1	440	1	0	0	0	0	0	0	0	1	9982	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		1092795	133913721	28	25543			1	48		3	3	598	N	T_C	5.817597e-07
MUC2	4583	hgsc.bcm.edu	37	11	1092813	1092813	+	Silent	SNP	C	C	T	rs12577898		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	1092813	C	T	1092813	2	4	440	1	0	0	0	0	0	0	0	1	9982	581	21	2		2	MUC2	11	1092813	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	18	1092813	133913703	29	25544			1	48		3	3	598	N	T_C	5.817597e-07
MUC2	4583	hgsc.bcm.edu	37	11	1093392	1093392	+	Silent	SNP	C	C	T	rs55912427		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	1093392	C	T	1093392	2	4	440	1	0	0	0	0	0	0	0	1	9982	639	23	1		1	MUC2	11	1093392	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	579	1093392	133913124	30	25545			1	48		3	3	598	N	T_C	5.817597e-07
INTS5	80789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62417117	62417117	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	62417117	A	G	62417117	2	3	440	1	0	0	0	0	0	0	0	1	7788	156	6	3		3	INTS5	11	62417117	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	61323725	62417117	72589399	31	25546											
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu	37	11	72423355	72423355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	72423355	A	G	72423355	3	3	440	1	0	0	0	0	1	0	0	0	838	131	5	3	3560	3	ARAP1	11	72423355	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	10006238	72423355	62583161	32	25547											
PGR	5241	broad.mit.edu	37	11	100933334	100933334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	100933334	G	A	100933334	3	1	440	1	0	0	0	0	1	0	0	0	11812	1261	44	2	765	2	PGR	11	100933334	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	28509979	100933334	34073182	33	25548											
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113628545	113628545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	113628545	G	A	113628545	3	1	440	1	0	0	0	0	1	0	0	0	18259	1116	39	1	1615	1	ZW10	11	113628545	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	12695211	113628545	21377971	34	25549											
H3F3C	440093	ucsc.edu	37	12	31944972	31944972	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	31944972	A	G	31944972	2	3	440	1	0	0	0	0	0	0	0	1	6942	175	7	3		3	H3F3C	12	31944972	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08		31944972	101906923	35	25550											
SKA3	221150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21732196	21732196	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	21732196	A	G	21732196	2	3	440	1	0	0	0	0	0	0	0	1	14367	59	3	3		3	SKA3	13	21732196	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08		21732196	93437682	36	25551											
ITGBL1	9358	ucsc.edu;bcgsc.ca	37	13	102235670	102235670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	102235670	G	C	102235670	3	2	440	1	0	0	0	0	1	0	0	0	7909	971	34	4	854	4	ITGBL1	13	102235670	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	80503474	102235670	12934208	37	25552											
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	33204952	33204952	+	Missense_Mutation	SNP	T	T	A	rs201928179	alternate_allele	TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	33204952	T	A	33204952	3	1	440	1	0	0	0	0	1	0	0	0	455	1580	55	5	3274	5	AKAP6	14	33204952	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		33204952	74144588	38	25553											
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	59791109	59791109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	59791109	T	A	59791109	3	1	440	1	0	0	0	0	1	0	0	0	4217	1580	55	5	952	5	DAAM1	14	59791109	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	26586157	59791109	47558431	39	25554											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42005411	42005411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	42005411	T	A	42005411	3	1	440	1	0	0	0	0	1	0	0	0	9547	1461	51	5	3177	5	MGA	15	42005411	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		42005411	60525981	40	25555											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62167108	62167108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	62167108	T	A	62167108	3	1	440	1	0	0	0	0	1	0	0	0	17203	1435	50	5	944	5	VPS13C	15	62167108	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	20161697	62167108	40364284	41	25556											
PRR25	388199	hgsc.bcm.edu	37	16	863367	863367	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	863367	C	T	863367	4	4	440	1	0	0	0	0	0	1	0	0	12607	644	23	1	725	1	PRR25	16	863367	Nonsense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		863367	89491386	42	25557											
ZZEF1	23140	broad.mit.edu	37	17	3977517	3977517	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	3977517	C	T	3977517	2	4	440	1	0	0	0	0	0	0	0	1	18267	581	21	2		2	ZZEF1	17	3977517	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		3977517	77217693	43	25558											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	G	rs121912666		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	7578190	T	G	7578190	3	3	440	1	0	0	0	0	1	0	0	0	16393	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	3600673	7578190	73617020	44	25559											
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19451346	19451346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	19451346	A	G	19451346	3	3	440	1	0	0	0	0	1	0	0	0	14660	304	11	3	369	3	SLC47A1	17	19451346	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	11873156	19451346	61743864	45	25560											
CHAD	1101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48546019	48546019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	48546019	C	A	48546019	3	1	440	1	0	0	0	0	1	0	0	0	3312	912	32	4	935	4	CHAD	17	48546019	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	29094673	48546019	32649191	46	25561											
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9452840	9452840	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	-	9452840	A	-	9452840	7	5	440	1	0	1	0	1	0	0	0	0	18002	246	9	0	727	0	ZNF559	19	9452840	Frame_Shift_Del	DEL	A	TCGA-BQ-5881-01A-11D-1589-08		9452840	49676143	47	25562											
TSHZ3	57616	hgsc.bcm.edu	37	19	31770237	31770237	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	31770237	A	G	31770237	2	3	440	1	0	0	0	0	0	0	0	1	16637	388	14	3		3	TSHZ3	19	31770237	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	22317397	31770237	27358746	48	25563											
CAPNS1	826	hgsc.bcm.edu	37	19	36631958	36631958	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	36631958	C	G	36631958	2	3	440	1	0	0	0	0	0	0	0	1	2635	755	27	4		4	CAPNS1	19	36631958	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	4861721	36631958	22497025	49	25564											
LILRB4	11006	broad.mit.edu	37	19	55175654	55175654	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	C	55175654	A	C	55175654	3	2	440	1	0	0	0	0	1	0	0	0	8800	159	6	5	387	5	LILRB4	19	55175654	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	18543696	55175654	3953329	50	25565											
ZNF628	89887	hgsc.bcm.edu	37	19	55993790	55993790	+	Silent	SNP	A	A	G	rs7254184		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	G	55993790	A	G	55993790	2	3	440	1	0	0	0	0	0	0	0	1	18064	69	3	3		3	ZNF628	19	55993790	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	818136	55993790	3135193	51	25566											
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43940944	43940944	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	43940944	C	T	43940944	2	4	440	1	0	0	0	0	0	0	0	1	13175	755	27	1		1	RBPJL	20	43940944	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		43940944	19084576	52	25567											
BRWD1	54014	bcgsc.ca	37	21	40608669	40608669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	40608669	C	T	40608669	3	4	440	1	0	0	0	0	1	0	0	0	1527	739	26	2	4663	2	BRWD1	21	40608669	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		40608669	7521226	53	25568											
TOP3B	8940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22327036	22327036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	T	22327036	G	T	22327036	3	4	440	1	0	0	0	0	1	0	0	0	16380	1232	43	4	2391	4	TOP3B	22	22327036	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08		22327036	28977530	54	25569											
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24483456	24483456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	24483456	C	A	24483456	3	1	440	1	0	0	0	0	1	0	0	0	2530	477	17	4	3401	4	CABIN1	22	24483456	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	2156420	24483456	26821110	55	25570											
DDX53	168400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	23019108	23019108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	A	23019108	G	A	23019108	3	1	440	1	0	0	0	0	1	0	0	0	4373	1145	40	1	936	1	DDX53	23	23019108	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08		23019108	132251452	56	25571											
ZBTB8OS	339487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33099257	33099257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	33099257	A	C	33099257	3	2	441	1	0	0	0	0	1	0	0	0	17569	72	3	5	203	5	ZBTB8OS	1	33099257	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08		33099257	216151364	1	25572											
RLF	6018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40701983	40701983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	40701983	G	A	40701983	3	1	441	1	0	0	0	0	1	0	0	0	13402	942	33	2	1639	2	RLF	1	40701983	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	7602726	40701983	208548638	2	25573											
TMEM53	79639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45120714	45120714	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	45120714	G	T	45120714	2	4	441	1	0	0	0	0	0	0	0	1	16191	1277	45	4		4	TMEM53	1	45120714	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	4418731	45120714	204129907	3	25574											
DAP3	7818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155695184	155695185	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	155695185	-	A	155695184	7	5	441	1	0	1	1	0	0	0	0	0	4236	825	29	0	296	0	DAP3	1	155695184	Frame_Shift_Ins	INS	-	TCGA-BQ-5882-01A-11D-1589-08	110574470	155695184	93555437	4	25575	321	2									
DAP3	7818	hgsc.bcm.edu;bcgsc.ca	37	1	155695186	155695186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	155695186	G	A	155695186	3	1	441	1	0	0	0	0	1	0	0	0	4236	1029	36	2	298	2	DAP3	1	155695186	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	2	155695186	93555435	5	25576	321	2									
TIPRL	261726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	168168189	168168189	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	168168189	G	A	168168189	2	1	441	1	0	0	0	0	0	0	0	1	15938	1132	40	1		1	TIPRL	1	168168189	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	12473003	168168189	81082432	6	25577											
RFWD2	64326	hgsc.bcm.edu	37	1	175914297	175914297	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	G	175914297	A	G	175914297	2	3	441	1	0	0	0	0	0	0	0	1	13273	98	4	3		3	RFWD2	1	175914297	Silent	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	7746108	175914297	73336324	7	25578											
KLHDC8A	55220	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	205312513	205312513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	205312513	C	T	205312513	3	4	441	1	0	0	0	0	1	0	0	0	8369	536	19	1	852	1	KLHDC8A	1	205312513	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	29398216	205312513	43938108	8	25579											
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	26534291	26534291	+	Missense_Mutation	SNP	C	C	A	rs199709313		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	26534291	C	A	26534291	3	1	441	1	0	0	0	0	1	0	0	0	6637	768	27	4	1035	4	GPR113	2	26534291	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		26534291	216665082	9	25580											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37267620	37267620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	37267620	A	T	37267620	3	4	441	1	0	0	0	0	1	0	0	0	7039	156	6	5	3385	5	HEATR5B	2	37267620	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	10733329	37267620	205931753	10	25581											
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128918714	128918714	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	128918714	C	A	128918714	2	1	441	1	0	0	0	0	0	0	0	1	16953	816	29	4		4	UGGT1	2	128918714	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	91651094	128918714	114280659	11	25582											
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	135206357	135206357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	135206357	G	A	135206357	3	1	441	1	0	0	0	0	1	0	0	0	9555	1000	35	2	2227	2	MGAT5	2	135206357	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	6287643	135206357	107993016	12	25583											
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	153471511	153471511	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	153471511	T	A	153471511	2	1	441	1	0	0	0	0	0	0	0	1	5959	1538	54	5		5	FMNL2	2	153471511	Silent	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	18265154	153471511	89727862	13	25584											
GPD2	2820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	157367411	157367411	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	157367411	C	T	157367411	2	4	441	1	0	0	0	0	0	0	0	1	6613	816	29	2		2	GPD2	2	157367411	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	3895900	157367411	85831962	14	25585											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179575504	179575504	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	179575504	G	A	179575504	2	1	441	1	0	0	0	0	0	0	0	1	16747	1074	38	1		1	TTN	2	179575504	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	22208093	179575504	63623869	15	25586											
CTLA4	1493	broad.mit.edu	37	2	204735458	204735458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	204735458	G	A	204735458	3	1	441	1	0	0	0	0	1	0	0	0	4013	1203	42	2	265	2	CTLA4	2	204735458	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	25159954	204735458	38463915	16	25587											
ACADL	33	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	211081192	211081192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	211081192	C	T	211081192	3	4	441	1	0	0	0	0	1	0	0	0	112	681	24	2	909	2	ACADL	2	211081192	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	6345734	211081192	32118181	17	25588											
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234363455	234363455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	234363455	G	T	234363455	3	4	441	1	0	0	0	0	1	0	0	0	4469	1348	47	4	2409	4	DGKD	2	234363455	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	23282263	234363455	8835918	18	25589											
SATB1	6304	broad.mit.edu;ucsc.edu	37	3	18391172	18391172	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	18391172	T	A	18391172	3	1	441	1	0	0	0	0	1	0	0	0	13866	1722	60	5	513	5	SATB1	3	18391172	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		18391172	179631258	19	25590											
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	42793437	42793438	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	TC	42793438	-	TC	42793437	7	5	441	1	0	1	1	0	0	0	0	0	2767	1368	48	0	1601	0	CCDC13	3	42793437	Frame_Shift_Ins	INS	-	TCGA-BQ-5882-01A-11D-1589-08	24402265	42793437	155228993	20	25591	322	2									
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42793447	42793447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	G	42793447	T	G	42793447	3	3	441	1	0	0	0	0	1	0	0	0	2767	1580	55	5	1611	5	CCDC13	3	42793447	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	10	42793447	155228983	21	25592	322	2									
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52544437	52544437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	52544437	G	A	52544437	3	1	441	1	0	0	0	0	1	0	0	0	15249	1145	40	1	2799	1	STAB1	3	52544437	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	9750990	52544437	145477993	22	25593											
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134670526	134670526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	134670526	T	A	134670526	3	1	441	1	0	0	0	0	1	0	0	0	5176	1783	62	5	447	5	EPHB1	3	134670526	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	82126089	134670526	63351904	23	25594											
RBP2	5948	broad.mit.edu	37	3	139195248	139195248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	139195248	C	A	139195248	3	1	441	1	0	0	0	0	1	0	0	0	13169	680	24	4	366	4	RBP2	3	139195248	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	4524722	139195248	58827182	24	25595											
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151078359	151078359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	G	151078359	A	G	151078359	3	3	441	1	0	0	0	0	1	0	0	0	9436	420	15	3	2892	3	MED12L	3	151078359	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	11883111	151078359	46944071	25	25596											
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	164050121	164050121	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	164050121	G	A	164050121	2	1	441	1	0	0	0	0	0	0	0	1	10147	1219	43	2		2	NAF1	4	164050121	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		164050121	27104155	26	25597											
TERT	7015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1255515	1255515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	1255515	C	A	1255515	3	1	441	1	0	0	0	0	1	0	0	0	15776	478	17	4	366	4	TERT	5	1255515	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		1255515	179659745	27	25598											
CCNI2	645121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132084160	132084160	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	132084160	C	A	132084160	4	1	441	1	0	0	0	0	0	1	0	0	2929	838	29	4	557	4	CCNI2	5	132084160	Nonsense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	130828645	132084160	48831100	28	25599											
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu	37	5	140563807	140563807	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	140563807	C	A	140563807	4	1	441	1	0	0	0	0	0	1	0	0	11548	893	31	4	1675	4	PCDHB16	5	140563807	Nonsense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	8479647	140563807	40351453	29	25600											
OR5V1	81696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29323498	29323498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	29323498	G	C	29323498	3	2	441	1	0	0	0	0	1	0	0	0	11191	1319	46	4	493	4	OR5V1	6	29323498	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		29323498	141791569	30	25601											
C6orf222	389384	broad.mit.edu	37	6	36294406	36294406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	36294406	G	T	36294406	3	4	441	1	0	0	0	0	1	0	0	0	2358	1174	41	4	1073	4	C6orf222	6	36294406	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	6970908	36294406	134820661	31	25602											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73108662	73108662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	G	73108662	T	G	73108662	3	3	441	1	0	0	0	0	1	0	0	0	13380	1406	49	5	5019	5	RIMS1	6	73108662	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	36814256	73108662	98006405	32	25603											
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	36445953	36445953	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	36445953	T	C	36445953	2	2	441	1	0	0	0	0	0	0	0	1	694	1432	50	3		3	ANLN	7	36445953	Silent	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		36445953	122692710	33	25604											
POM121	9883	hgsc.bcm.edu	37	7	72416149	72416149	+	Missense_Mutation	SNP	T	T	A	rs17406301		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	72416149	T	A	72416149	3	1	441	1	0	0	0	0	1	0	0	0	12246	1580	55	5	2801	5	POM121	7	72416149	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	35970196	72416149	86722514	34	25605											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100681165	100681165	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	100681165	T	C	100681165	2	2	441	1	0	0	0	0	0	0	0	1	9981	1413	49	3		3	MUC17	7	100681165	Silent	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	28265016	100681165	58457498	35	25606											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116340025	116340025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	116340025	T	C	116340025	3	2	441	1	0	0	0	0	1	0	0	0	9492	1580	55	3	889	3	MET	7	116340025	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	15658860	116340025	42798638	36	25607											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121651531	121651531	+	Silent	SNP	C	C	T	rs143422308	alternate_allele	TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	121651531	C	T	121651531	2	4	441	1	0	0	0	0	0	0	0	1	12827	680	24	2		2	PTPRZ1	7	121651531	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	5311506	121651531	37487132	37	25608											
WRN	7486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	30938567	30938567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	30938567	G	A	30938567	3	1	441	1	0	0	0	0	1	0	0	0	17414	1145	40	1	1054	1	WRN	8	30938567	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		30938567	115425455	38	25609											
HTRA4	203100	broad.mit.edu;bcgsc.ca	37	8	38831823	38831823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	38831823	G	A	38831823	3	1	441	1	0	0	0	0	1	0	0	0	7463	1319	46	2	43	2	HTRA4	8	38831823	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	7893256	38831823	107532199	39	25610											
FAM49B	51571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	130883632	130883632	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	130883632	C	A	130883632	4	1	441	1	0	0	0	0	0	1	0	0	5583	893	31	4	826	4	FAM49B	8	130883632	Nonsense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	92051809	130883632	15480390	40	25611											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133816926	133816926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	133816926	G	C	133816926	3	2	441	1	0	0	0	0	1	0	0	0	11839	1000	35	4	814	4	PHF20L1	8	133816926	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	2933294	133816926	12547096	41	25612											
CA9	768	broad.mit.edu;ucsc.edu	37	9	35676109	35676109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	35676109	G	T	35676109	3	4	441	1	0	0	0	0	1	0	0	0	2526	1116	39	4	667	4	CA9	9	35676109	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		35676109	105537322	42	25613											
FBXO10	26267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37537307	37537307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	37537307	G	T	37537307	3	4	441	1	0	0	0	0	1	0	0	0	5733	962	34	4	1687	4	FBXO10	9	37537307	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	1861198	37537307	103676124	43	25614											
ASPN	54829	hgsc.bcm.edu	37	9	95237070	95237070	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	95237070	G	C	95237070	3	2	441	1	0	0	0	0	1	0	0	0	1057	1377	48	4	1060	4	ASPN	9	95237070	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	57699763	95237070	45976361	44	25615											
CAMSAP1	157922	broad.mit.edu	37	9	138714243	138714243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	138714243	T	C	138714243	3	2	441	1	0	0	0	0	1	0	0	0	2613	1551	54	3	2572	3	CAMSAP1	9	138714243	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	43477173	138714243	2499188	45	25616											
RBM17	84991	broad.mit.edu;bcgsc.ca	37	10	6157412	6157414	+	Splice_Site	DEL	TCA	TCA	-	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	-	6157414	TCA	-	6157412	8	5	441	1	0	1	0	1	0	0	1	0	13132	1798	62	0		0	RBM17	10	6157412	Splice_Site	DEL	TCA	TCGA-BQ-5882-01A-11D-1589-08		6157412	129377335	46	25617											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	24508666	24508666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	24508666	G	T	24508666	3	4	441	1	0	0	0	0	1	0	0	0	8223	1087	38	4	188	4	KIAA1217	10	24508666	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	18351254	24508666	111026081	47	25618											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32580239	32580239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	G	32580239	C	G	32580239	3	3	441	1	0	0	0	0	1	0	0	0	5162	739	26	4	1723	4	EPC1	10	32580239	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	8071573	32580239	102954508	48	25619											
OSBPL5	114879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3141834	3141834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	3141834	G	C	3141834	3	2	441	1	0	0	0	0	1	0	0	0	11287	962	34	4	2284	4	OSBPL5	11	3141834	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		3141834	131864682	49	25620											
OR8H3	390152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55890629	55890629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	G	55890629	A	G	55890629	3	3	441	1	0	0	0	0	1	0	0	0	11246	15	1	3	783	3	OR8H3	11	55890629	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	52748795	55890629	79115887	50	25621											
IFLTD1	160492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25702289	25702289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	25702289	C	A	25702289	3	1	441	1	0	0	0	0	1	0	0	0	7537	507	18	4	976	4	IFLTD1	12	25702289	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		25702289	108149606	51	25622											
ALG10B	144245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	38714192	38714192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	38714192	T	C	38714192	3	2	441	1	0	0	0	0	1	0	0	0	512	1667	58	3	609	3	ALG10B	12	38714192	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	13011903	38714192	95137703	52	25623											
MLL2	8085	hgsc.bcm.edu	37	12	49427714	49427714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	49427714	T	C	49427714	3	2	441	1	0	0	0	0	1	0	0	0	9628	1464	51	3	5903	3	MLL2	12	49427714	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	10713522	49427714	84424181	53	25624											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120582190	120582190	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	120582190	G	T	120582190	2	4	441	1	0	0	0	0	0	0	0	1	6306	932	33	4		4	GCN1L1	12	120582190	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	71154476	120582190	13269705	54	25625											
HPD	3242	broad.mit.edu	37	12	122292680	122292680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	122292680	C	T	122292680	3	4	441	1	0	0	0	0	1	0	0	0	7339	768	27	1	870	1	HPD	12	122292680	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	1710490	122292680	11559215	55	25626											
ATP12A	479	bcgsc.ca	37	13	25265156	25265156	+	Missense_Mutation	SNP	G	G	A	rs142075922		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	25265156	G	A	25265156	3	1	441	1	0	0	0	0	1	0	0	0	1122	1087	38	1	884	1	ATP12A	13	25265156	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		25265156	89904722	56	25627											
TRIM9	114088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51475908	51475908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	51475908	T	C	51475908	3	2	441	1	0	0	0	0	1	0	0	0	16561	1580	55	3	1010	3	TRIM9	14	51475908	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		51475908	55873632	57	25628											
SPTLC2	9517	broad.mit.edu	37	14	77984506	77984506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	77984506	A	T	77984506	3	4	441	1	0	0	0	0	1	0	0	0	15136	72	3	5	252	5	SPTLC2	14	77984506	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	26508598	77984506	29365034	58	25629											
RTL1	388015	broad.mit.edu;bcgsc.ca	37	14	101348358	101348358	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	-	101348358	T	-	101348358	7	5	441	1	0	1	0	1	0	0	0	0	13737	1609	56	0	1312	0	RTL1	14	101348358	Frame_Shift_Del	DEL	T	TCGA-BQ-5882-01A-11D-1589-08	23363852	101348358	6001182	59	25630											
AHNAK2	113146	broad.mit.edu	37	14	105413526	105413526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	105413526	C	A	105413526	3	1	441	1	0	0	0	0	1	0	0	0	415	680	24	4	9129	4	AHNAK2	14	105413526	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	4065168	105413526	1936014	60	25631											
USP50	373509	broad.mit.edu	37	15	50835960	50835960	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	50835960	G	A	50835960	2	1	441	1	0	0	0	0	0	0	0	1	17094	987	35	2		2	USP50	15	50835960	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		50835960	51695432	61	25632											
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79064138	79064138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	79064138	G	A	79064138	3	1	441	1	0	0	0	0	1	0	0	0	271	1319	46	2	2935	2	ADAMTS7	15	79064138	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	28228178	79064138	23467254	62	25633											
IL16	3603	broad.mit.edu	37	15	81598328	81598328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	81598328	G	A	81598328	3	1	441	1	0	0	0	0	1	0	0	0	7640	1203	42	2	3562	2	IL16	15	81598328	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	2534190	81598328	20933064	63	25634											
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23540828	23540828	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	23540828	C	T	23540828	2	4	441	1	0	0	0	0	0	0	0	1	4880	697	25	2		2	EARS2	16	23540828	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		23540828	66813925	64	25635											
STX4	6810	broad.mit.edu	37	16	31050905	31050905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	31050905	C	T	31050905	3	4	441	1	0	0	0	0	1	0	0	0	15359	768	27	1	780	1	STX4	16	31050905	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	7510077	31050905	59303848	65	25636											
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31089679	31089679	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	31089679	T	C	31089679	2	2	441	1	0	0	0	0	0	0	0	1	18074	1567	55	3		3	ZNF646	16	31089679	Silent	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	38774	31089679	59265074	66	25637											
RNF166	115992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	88765421	88765421	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	88765421	C	A	88765421	2	1	441	1	0	0	0	0	0	0	0	1	13470	813	29	4		4	RNF166	16	88765421	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	57675742	88765421	1589332	67	25638											
MED1	5469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37579984	37579984	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	37579984	A	T	37579984	2	4	441	1	0	0	0	0	0	0	0	1	9432	407	15	5		5	MED1	17	37579984	Silent	SNP	A	TCGA-BQ-5882-01A-11D-1589-08		37579984	43615226	68	25639											
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73837041	73837041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	73837041	A	T	73837041	3	4	441	1	0	0	0	0	1	0	0	0	16999	217	8	5	2765	5	UNC13D	17	73837041	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	36257057	73837041	7358169	69	25640											
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74288035	74288035	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	74288035	G	A	74288035	4	1	441	1	0	0	0	0	0	1	0	0	12893	1299	45	2	2780	2	QRICH2	17	74288035	Nonsense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	450994	74288035	6907175	70	25641											
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	23865865	23865865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	23865865	G	A	23865865	3	1	441	1	0	0	0	0	1	0	0	0	15539	1058	37	1	1018	1	TAF4B	18	23865865	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		23865865	54211383	71	25642											
SERPINB5	5268	hgsc.bcm.edu	37	18	61170566	61170566	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	61170566	G	C	61170566	3	2	441	1	0	0	0	0	1	0	0	0	14117	1291	45	4	761	4	SERPINB5	18	61170566	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	37304701	61170566	16906682	72	25643											
LPPR3	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	814747	814747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	814747	T	C	814747	3	2	441	1	0	0	0	0	1	0	0	0	8933	1609	56	3	1646	3	LPPR3	19	814747	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		814747	58314236	73	25644											
ARID3A	1820	bcgsc.ca	37	19	972016	972016	+	Missense_Mutation	SNP	C	C	T	rs150609955		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	972016	C	T	972016	3	4	441	1	0	0	0	0	1	0	0	0	916	768	27	1	1763	1	ARID3A	19	972016	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	157269	972016	58156967	74	25645											
ABCA7	10347	broad.mit.edu	37	19	1062275	1062275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	1062275	C	T	1062275	3	4	441	1	0	0	0	0	1	0	0	0	37	768	27	1	5837	1	ABCA7	19	1062275	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	90259	1062275	58066708	75	25646											
JSRP1	126306	hgsc.bcm.edu	37	19	2253780	2253780	+	Missense_Mutation	SNP	A	A	G	rs10426549		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	G	2253780	A	G	2253780	3	3	441	1	0	0	0	0	1	0	0	0	7973	275	10	3	732	3	JSRP1	19	2253780	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	1191505	2253780	56875203	76	25647											
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38190209	38190209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	38190209	G	T	38190209	3	4	441	1	0	0	0	0	1	0	0	0	18045	1290	45	4	1271	4	ZNF607	19	38190209	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	35936429	38190209	20938774	77	25648											
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38621370	38621370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	38621370	A	C	38621370	3	2	441	1	0	0	0	0	1	0	0	0	14344	72	3	5	3131	5	SIPA1L3	19	38621370	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	431161	38621370	20507613	78	25649											
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40540344	40540344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	40540344	G	A	40540344	3	1	441	1	0	0	0	0	1	0	0	0	18165	1232	43	2	83	2	ZNF780B	19	40540344	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	1918974	40540344	18588639	79	25650											
CLPTM1	1209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45495628	45495628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	45495628	G	A	45495628	3	1	441	1	0	0	0	0	1	0	0	0	3556	1145	40	1	1743	1	CLPTM1	19	45495628	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	4955284	45495628	13633355	80	25651											
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55493701	55493701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	T	55493701	A	T	55493701	3	4	441	1	0	0	0	0	1	0	0	0	10484	449	16	5	653	5	NLRP2	19	55493701	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	9998073	55493701	3635282	81	25652											
AHCY	191	ucsc.edu	37	20	32880315	32880315	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	C	32880315	T	C	32880315	5	2	441	1	0	0	0	0	0	0	1	0	409	1594	55	3	1032	3	AHCY	20	32880315	Splice_Site	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		32880315	30145205	82	25653											
RPL3	6122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39714484	39714484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	39714484	C	A	39714484	3	1	441	1	0	0	0	0	1	0	0	0	13592	796	28	4	1130	4	RPL3	22	39714484	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		39714484	11590082	83	25654											
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	44107398	44107399	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	44107399	-	A	44107398	7	5	441	1	0	1	1	0	0	0	0	0	4941	478	17	0	3609	0	EFCAB6	22	44107398	Frame_Shift_Ins	INS	-	TCGA-BQ-5882-01A-11D-1589-08	4392914	44107398	7197168	84	25655											
YY2	404281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	21875588	21875588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	A	21875588	G	A	21875588	3	1	441	1	0	0	0	0	1	0	0	0	17521	1087	38	1	988	1	YY2	23	21875588	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		21875588	133394972	85	25656											
CLCNKA	1187	ucsc.edu	37	1	16356252	16356253	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	TG	16356253	CA	TG	16356252	3	4	442	1	0	0	0	0	1	0	0	0	3471	581	21	2	1300	2	CLCNKA	1	16356252	Missense_Mutation	DNP	CA	TCGA-BQ-5883-01A-11D-1589-08		16356252	232894369	1	25657											
MSH4	4438	broad.mit.edu	37	1	76282197	76282197	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	C	76282197	A	C	76282197	3	2	442	1	0	0	0	0	1	0	0	0	9879	14	1	5	977	5	MSH4	1	76282197	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	59925945	76282197	172968424	2	25658											
ZNF687	57592	bcgsc.ca	37	1	151260133	151260133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	151260133	G	A	151260133	3	1	442	1	0	0	0	0	1	0	0	0	18104	1203	42	2	1368	2	ZNF687	1	151260133	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	74977936	151260133	97990488	3	25659											
AQP10	89872	broad.mit.edu	37	1	154294468	154294468	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	154294468	C	T	154294468	2	4	442	1	0	0	0	0	0	0	0	1	822	912	32	2		2	AQP10	1	154294468	Silent	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	3034335	154294468	94956153	4	25660											
KIF3C	3797	broad.mit.edu;bcgsc.ca	37	2	26203576	26203576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	26203576	G	A	26203576	3	1	442	1	0	0	0	0	1	0	0	0	8309	1232	43	2	1202	2	KIF3C	2	26203576	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		26203576	216995797	5	25661											
VWA3B	200403	broad.mit.edu	37	2	98736133	98736133	+	Missense_Mutation	SNP	G	G	A	rs200875707	alternate_allele	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	98736133	G	A	98736133	3	1	442	1	0	0	0	0	1	0	0	0	17253	1203	42	2	459	2	VWA3B	2	98736133	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	72532557	98736133	144463240	6	25662											
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	130931124	130931124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	130931124	C	T	130931124	3	4	442	1	0	0	0	0	1	0	0	0	14820	478	17	2	2319	2	SMPD4	2	130931124	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	32194991	130931124	112268249	7	25663											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137852688	137852688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	137852688	C	T	137852688	3	4	442	1	0	0	0	0	1	0	0	0	15892	623	22	2	1113	2	THSD7B	2	137852688	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	6921564	137852688	105346685	8	25664											
PER2	8864	hgsc.bcm.edu	37	2	239162113	239162113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	C	239162113	G	C	239162113	3	2	442	1	0	0	0	0	1	0	0	0	11737	1203	42	4	1236	4	PER2	2	239162113	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	101309425	239162113	4037260	9	25665											
ENTPD3	956	hgsc.bcm.edu;broad.mit.edu	37	3	40465427	40465427	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	40465427	T	A	40465427	2	1	442	1	0	0	0	0	0	0	0	1	5142	1596	56	5		5	ENTPD3	3	40465427	Silent	SNP	T	TCGA-BQ-5883-01A-11D-1589-08		40465427	157557003	10	25666											
LTF	4057	broad.mit.edu	37	3	46492033	46492033	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	46492033	A	G	46492033	2	3	442	1	0	0	0	0	0	0	0	1	9086	156	6	3		3	LTF	3	46492033	Silent	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	6026606	46492033	151530397	11	25667											
ZIC4	84107	hgsc.bcm.edu	37	3	147109013	147109013	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	147109013	C	A	147109013	4	1	442	1	0	0	0	0	0	1	0	0	17693	893	31	4	303	4	ZIC4	3	147109013	Nonsense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	100616980	147109013	50913417	12	25668											
IDUA	3425	hgsc.bcm.edu	37	4	980971	980971	+	Missense_Mutation	SNP	T	T	G	rs10794537		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	980971	T	G	980971	3	3	442	1	0	0	0	0	1	0	0	0	7511	1461	51	5	101	5	IDUA	4	980971	Missense_Mutation	SNP	T	TCGA-BQ-5883-01A-11D-1589-08		980971	190173305	13	25669											
CENPC1	1060	hgsc.bcm.edu	37	4	68338326	68338326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	68338326	T	A	68338326	3	1	442	1	0	0	0	0	1	0	0	0	3231	1432	50	5	6	5	CENPC1	4	68338326	Missense_Mutation	SNP	T	TCGA-BQ-5883-01A-11D-1589-08	67357355	68338326	122815950	14	25670											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123264653	123264653	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	123264653	C	G	123264653	2	3	442	1	0	0	0	0	0	0	0	1	8215	784	28	4		4	KIAA1109	4	123264653	Silent	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	54926327	123264653	67889623	15	25671											
TPPP	11076	hgsc.bcm.edu	37	5	678087	678087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	678087	C	T	678087	3	4	442	1	0	0	0	0	1	0	0	0	16425	681	24	2	582	2	TPPP	5	678087	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		678087	180237173	16	25672											
MAST4	375449	broad.mit.edu	37	5	66432487	66432487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	66432487	G	A	66432487	3	1	442	1	0	0	0	0	1	0	0	0	9334	1174	41	2	2693	2	MAST4	5	66432487	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	65754400	66432487	114482773	17	25673											
GPR98	84059	broad.mit.edu	37	5	90136585	90136585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	90136585	A	G	90136585	3	3	442	1	0	0	0	0	1	0	0	0	6728	275	10	3	17112	3	GPR98	5	90136585	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	23704098	90136585	90778675	18	25674											
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140229899	140229899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	140229899	C	T	140229899	3	4	442	1	0	0	0	0	1	0	0	0	11538	797	28	2	1821	2	PCDHA9	5	140229899	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	50093314	140229899	40685361	19	25675											
MICB	4277	broad.mit.edu	37	6	31473399	31473399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	31473399	C	T	31473399	3	4	442	1	0	0	0	0	1	0	0	0	9582	594	21	2	82	2	MICB	6	31473399	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		31473399	139641668	20	25676											
SAMD9L	219285	broad.mit.edu;bcgsc.ca	37	7	92763422	92763422	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	92763422	G	A	92763422	2	1	442	1	0	0	0	0	0	0	0	1	13840	1164	41	2		2	SAMD9L	7	92763422	Silent	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		92763422	66375241	21	25677											
CFTR	1080	broad.mit.edu	37	7	117235098	117235098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	117235098	A	G	117235098	3	3	442	1	0	0	0	0	1	0	0	0	3296	101	4	3	2663	3	CFTR	7	117235098	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	24471676	117235098	41903565	22	25678											
SLC4A2	6522	hgsc.bcm.edu	37	7	150763663	150763663	+	Missense_Mutation	SNP	G	G	C	rs201747636		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	C	150763663	G	C	150763663	3	2	442	1	0	0	0	0	1	0	0	0	14667	1261	44	4	656	4	SLC4A2	7	150763663	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	33528565	150763663	8375000	23	25679											
ADCY8	114	broad.mit.edu;bcgsc.ca	37	8	131916171	131916174	+	Frame_Shift_Del	DEL	TAAG	TAAG	-	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	TAAG	TAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	-	131916174	TAAG	-	131916171	7	5	442	1	0	1	0	1	0	0	0	0	300	1751	61	0	2045	0	ADCY8	8	131916171	Frame_Shift_Del	DEL	TAAG	TCGA-BQ-5883-01A-11D-1589-08		131916171	14447851	24	25680											
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	74300679	74300679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	C	74300679	G	C	74300679	3	2	442	1	0	0	0	0	1	0	0	0	16133	1348	47	4	224	4	TMEM2	9	74300679	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		74300679	66912752	25	25681											
CORO2A	7464	broad.mit.edu	37	9	100899870	100899870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	100899870	C	A	100899870	3	1	442	1	0	0	0	0	1	0	0	0	3758	478	17	4	1315	4	CORO2A	9	100899870	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	26599191	100899870	40313561	26	25682											
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	115978231	115978231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	115978231	A	T	115978231	3	4	442	1	0	0	0	0	1	0	0	0	15742	69	3	5	2448	5	TDRD1	10	115978231	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08		115978231	19556516	27	25683											
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	127459092	127459092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	127459092	C	T	127459092	3	4	442	1	0	0	0	0	1	0	0	0	9667	507	18	2	673	2	MMP21	10	127459092	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	11480861	127459092	8075655	28	25684											
AP2A2	161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	984672	984672	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	984672	C	T	984672	4	4	442	1	0	0	0	0	0	1	0	0	740	595	21	2	759	2	AP2A2	11	984672	Nonsense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		984672	134021844	29	25685											
SYT9	143425	broad.mit.edu	37	11	7334870	7334870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	7334870	C	T	7334870	3	4	442	1	0	0	0	0	1	0	0	0	15493	739	26	2	752	2	SYT9	11	7334870	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	6350198	7334870	127671646	30	25686											
STX5	6811	bcgsc.ca	37	11	62592562	62592562	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	62592562	C	A	62592562	4	1	442	1	0	0	0	0	0	1	0	0	15360	922	32	4	458	4	STX5	11	62592562	Nonsense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	55257692	62592562	72413954	31	25687											
ARHGAP20	57569	broad.mit.edu	37	11	110450663	110450663	+	Missense_Mutation	SNP	C	C	T	rs202001398		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	110450663	C	T	110450663	3	4	442	1	0	0	0	0	1	0	0	0	870	652	23	1	572	1	ARHGAP20	11	110450663	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	47858101	110450663	24555853	32	25688											
DCPS	28960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	126201299	126201299	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	126201299	G	T	126201299	5	4	442	1	0	0	0	0	0	0	1	0	4303	956	33	4	386	4	DCPS	11	126201299	Splice_Site	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	15750636	126201299	8805217	33	25689											
PRDM10	56980	broad.mit.edu	37	11	129814751	129814751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	129814751	C	T	129814751	3	4	442	1	0	0	0	0	1	0	0	0	12461	768	27	1	2873	1	PRDM10	11	129814751	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	3613452	129814751	5191765	34	25690											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	25398284	C	T	25398284	3	4	442	1	0	0	0	0	1	0	0	0	8445	507	18	2	671	2	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		25398284	108453611	35	25691											
OR10AD1	121275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48596939	48596939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	48596939	A	G	48596939	3	3	442	1	0	0	0	0	1	0	0	0	10903	333	12	3	820	3	OR10AD1	12	48596939	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	23198655	48596939	85254956	36	25692											
ATP5B	506	ucsc.edu	37	12	57036240	57036240	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	57036240	A	G	57036240	5	3	442	1	0	0	0	0	0	0	1	0	1148	405	14	3	529	3	ATP5B	12	57036240	Splice_Site	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	8439301	57036240	76815655	37	25693											
STON2	85439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	81862455	81862455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	81862455	C	G	81862455	3	3	442	1	0	0	0	0	1	0	0	0	15330	912	32	4	2575	4	STON2	14	81862455	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		81862455	25487085	38	25694											
MFAP1	4236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	44109600	44109600	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	44109600	T	G	44109600	2	3	442	1	0	0	0	0	0	0	0	1	9520	1770	62	5		5	MFAP1	15	44109600	Silent	SNP	T	TCGA-BQ-5883-01A-11D-1589-08		44109600	58421792	39	25695											
CYB5D2	124936	bcgsc.ca	37	17	4058011	4058021	+	Frame_Shift_Del	DEL	CCCGGCACTGA	CCCGGCACTGA	-	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	CCCGGCACTGA	CCCGGCACTGA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	-	4058021	CCCGGCACTGA	-	4058011	7	5	442	1	0	1	0	1	0	0	0	0	4127	610	22	0	445	0	CYB5D2	17	4058011	Frame_Shift_Del	DEL	CCCGGCACTGA	TCGA-BQ-5883-01A-11D-1589-08		4058011	77137199	40	25696											
AURKB	9212	broad.mit.edu	37	17	8108544	8108544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	8108544	C	T	8108544	3	4	442	1	0	0	0	0	1	0	0	0	1223	768	27	1	191	1	AURKB	17	8108544	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	4050533	8108544	73086666	41	25697											
QRICH2	84074	hgsc.bcm.edu	37	17	74288532	74288532	+	Missense_Mutation	SNP	C	C	T	rs144028230		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	74288532	C	T	74288532	3	4	442	1	0	0	0	0	1	0	0	0	12893	536	19	1	3277	1	QRICH2	17	74288532	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	66179988	74288532	6906678	42	25698	323	2									
QRICH2	84074	hgsc.bcm.edu	37	17	74288538	74288538	+	Missense_Mutation	SNP	T	T	A	rs142871405	alternate_allele	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	74288538	T	A	74288538	3	1	442	1	0	0	0	0	1	0	0	0	12893	1435	50	5	3283	5	QRICH2	17	74288538	Missense_Mutation	SNP	T	TCGA-BQ-5883-01A-11D-1589-08	6	74288538	6906672	43	25699	323	2									
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	20573491	20573491	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	G	20573491	C	G	20573491	3	3	442	1	0	0	0	0	1	0	0	0	13118	805	28	4	1739	4	RBBP8	18	20573491	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		20573491	57503757	44	25700											
ACSBG2	81616	broad.mit.edu	37	19	6147661	6147661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	6147661	G	A	6147661	3	1	442	1	0	0	0	0	1	0	0	0	174	1116	39	1	278	1	ACSBG2	19	6147661	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		6147661	52981322	45	25701											
ZFP30	22835	broad.mit.edu	37	19	38126264	38126264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	38126264	C	T	38126264	3	4	442	1	0	0	0	0	1	0	0	0	17656	536	19	1	385	1	ZFP30	19	38126264	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	31978603	38126264	21002719	46	25702											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47632919	47632919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	47632919	G	A	47632919	3	1	442	1	0	0	0	0	1	0	0	0	853	1377	48	2	4404	2	ARFGEF2	20	47632919	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		47632919	15392601	47	25703											
CLIC6	54102	hgsc.bcm.edu	37	21	36042941	36042941	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	36042941	C	T	36042941	2	4	442	1	0	0	0	0	0	0	0	1	3532	639	23	1		1	CLIC6	21	36042941	Silent	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		36042941	12086954	48	25704											
MMP11	4320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24123480	24123480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	24123480	G	A	24123480	3	1	442	1	0	0	0	0	1	0	0	0	9657	1145	40	1	981	1	MMP11	22	24123480	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		24123480	27181086	49	25705											
XBP1	7494	broad.mit.edu	37	22	29196498	29196499	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	GCC	29196499	-	GCC	29196498	7	5	442	1	0	1	1	0	0	0	0	0	17434	1567	55	0	1161	0	XBP1	22	29196498	In_Frame_Ins	INS	-	TCGA-BQ-5883-01A-11D-1589-08	5073018	29196498	22108068	50	25706											
MEI1	150365	hgsc.bcm.edu	37	22	42189857	42189857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	C	42189857	T	C	42189857	3	2	442	1	0	0	0	0	1	0	0	0	9472	1580	55	3	3476	3	MEI1	22	42189857	Missense_Mutation	SNP	T	TCGA-BQ-5883-01A-11D-1589-08	12993359	42189857	9114709	51	25707											
AR	367	hgsc.bcm.edu	37	X	66765195	66765196	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	AG	66765196	GC	AG	66765195	3	1	442	1	0	0	0	0	1	0	0	0	836	962	34	2	209	2	AR	23	66765195	Missense_Mutation	DNP	GC	TCGA-BQ-5883-01A-11D-1589-08		66765195	88505365	52	25708											
CNGA2	1260	broad.mit.edu	37	X	150911739	150911739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	A	150911739	G	A	150911739	3	1	442	1	0	0	0	0	1	0	0	0	3599	1087	38	1	786	1	CNGA2	23	150911739	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	84146544	150911739	4358821	53	25709											
NLGN4Y	22829	hgsc.bcm.edu	37	Y	16952767	16952767	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	T	16952767	C	T	16952767	2	4	442	1	0	0	0	0	0	0	0	1	10472	668	24	2		2	NLGN4Y	24	16952767	Silent	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		16952767	42420799	54	25710											
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	2160390	C	G	2160390	3	3	443	1	0	0	0	0	1	0	0	0	14370	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		2160390	247090231	1	25711											
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24979017	24979017	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	24979017	A	T	24979017	3	4	443	1	0	0	0	0	1	0	0	0	15180	72	3	5	844	5	SRRM1	1	24979017	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	22818627	24979017	224271604	2	25712											
SRRM1	10250	hgsc.bcm.edu	37	1	24993412	24993412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	24993412	C	G	24993412	3	3	443	1	0	0	0	0	1	0	0	0	15180	528	19	4	1785	4	SRRM1	1	24993412	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	14395	24993412	224257209	3	25713											
PEF1	553115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32100869	32100869	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	32100869	T	C	32100869	2	2	443	1	0	0	0	0	0	0	0	1	11725	1683	59	3		3	PEF1	1	32100869	Silent	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	7107457	32100869	217149752	4	25714											
AKR1A1	10327	ucsc.edu	37	1	46032694	46032694	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	46032694	T	C	46032694	5	2	443	1	0	0	0	0	0	0	1	0	465	1710	59	3	368	3	AKR1A1	1	46032694	Splice_Site	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	13931825	46032694	203217927	5	25715											
SLC1A7	6512	broad.mit.edu	37	1	53555558	53555558	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	53555558	G	A	53555558	2	1	443	1	0	0	0	0	0	0	0	1	14450	1103	39	1		1	SLC1A7	1	53555558	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	7522864	53555558	195695063	6	25716											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232650793	232650793	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	232650793	A	C	232650793	3	2	443	1	0	0	0	0	1	0	0	0	14343	188	7	5	4959	5	SIPA1L2	1	232650793	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	179095235	232650793	16599828	7	25717											
DNMT3A	1788	broad.mit.edu	37	2	25469548	25469548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	25469548	A	G	25469548	3	3	443	1	0	0	0	0	1	0	0	0	4678	101	4	3	1574	3	DNMT3A	2	25469548	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		25469548	217729825	8	25718											
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	39285904	39285904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	39285904	C	T	39285904	4	4	443	1	0	0	0	0	0	1	0	0	14949	624	22	2	3830	2	SOS1	2	39285904	Nonsense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	13816356	39285904	203913469	9	25719											
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160086335	160086335	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	160086335	C	A	160086335	2	1	443	1	0	0	0	0	0	0	0	1	15556	610	22	4		4	TANC1	2	160086335	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	120800431	160086335	83113038	10	25720											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170034511	170034513	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	-	170034513	GAT	-	170034511	7	5	443	1	0	1	0	1	0	0	0	0	8963	1066	37	0	3880	0	LRP2	2	170034511	In_Frame_Del	DEL	GAT	TCGA-BQ-5884-01A-11D-1589-08	9948176	170034511	73164862	11	25721											
IRS1	3667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	227662872	227662872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	227662872	C	T	227662872	3	4	443	1	0	0	0	0	1	0	0	0	7847	536	19	1	3149	1	IRS1	2	227662872	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	57628361	227662872	15536501	12	25722											
ALS2CL	259173	broad.mit.edu	37	3	46725271	46725271	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	46725271	C	T	46725271	5	4	443	1	0	0	0	0	0	0	1	0	551	521	18	2	2020	2	ALS2CL	3	46725271	Splice_Site	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		46725271	151297159	13	25723											
SEMA5B	54437	hgsc.bcm.edu	37	3	122632248	122632248	+	Missense_Mutation	SNP	C	C	G	rs183401039		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	122632248	C	G	122632248	3	3	443	1	0	0	0	0	1	0	0	0	14051	680	24	4	1179	4	SEMA5B	3	122632248	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	75906977	122632248	75390182	14	25724											
CPNE4	131034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	131254172	131254172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	131254172	G	A	131254172	3	1	443	1	0	0	0	0	1	0	0	0	3816	1333	46	2	136	2	CPNE4	3	131254172	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	8621924	131254172	66768258	15	25725											
SUCNR1	56670	broad.mit.edu	37	3	151599109	151599110	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	151599110	-	T	151599109	7	5	443	1	0	1	1	0	0	0	0	0	15378	680	24	0	784	0	SUCNR1	3	151599109	Frame_Shift_Ins	INS	-	TCGA-BQ-5884-01A-11D-1589-08	20344937	151599109	46423321	16	25726											
TIFA	92610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113199250	113199250	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	113199250	T	G	113199250	3	3	443	1	0	0	0	0	1	0	0	0	15906	1841	64	5	235	5	TIFA	4	113199250	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08		113199250	77955026	17	25727											
METTL14	57721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119631350	119631350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	119631350	T	A	119631350	3	1	443	1	0	0	0	0	1	0	0	0	9505	1783	62	5	1306	5	METTL14	4	119631350	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	6432100	119631350	71522926	18	25728											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123161284	123161284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	123161284	G	C	123161284	3	2	443	1	0	0	0	0	1	0	0	0	8215	943	33	4	4553	4	KIAA1109	4	123161284	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	3529934	123161284	67992992	19	25729											
ATG10	83734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	81474374	81474374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	81474374	C	A	81474374	3	1	443	1	0	0	0	0	1	0	0	0	1089	796	28	4	435	4	ATG10	5	81474374	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		81474374	99440886	20	25730											
WDR36	134430	broad.mit.edu	37	5	110428267	110428267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	110428267	G	T	110428267	3	4	443	1	0	0	0	0	1	0	0	0	17302	1087	38	4	283	4	WDR36	5	110428267	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	28953893	110428267	70486993	21	25731											
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	142283206	142283206	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	142283206	G	C	142283206	3	2	443	1	0	0	0	0	1	0	0	0	875	1348	47	4	834	4	ARHGAP26	5	142283206	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	31854939	142283206	38632054	22	25732											
GABRB2	2561	broad.mit.edu	37	5	160753381	160753381	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	160753381	C	G	160753381	2	3	443	1	0	0	0	0	0	0	0	1	6174	465	17	4		4	GABRB2	5	160753381	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	18470175	160753381	20161879	23	25733											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169477372	169477372	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	169477372	G	C	169477372	3	2	443	1	0	0	0	0	1	0	0	0	4689	1174	41	4	4346	4	DOCK2	5	169477372	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	8723991	169477372	11437888	24	25734											
F12	2161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176831305	176831305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	176831305	G	A	176831305	3	1	443	1	0	0	0	0	1	0	0	0	5341	1174	41	2	961	2	F12	5	176831305	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	7353933	176831305	4083955	25	25735											
MAML1	9794	broad.mit.edu;bcgsc.ca	37	5	179193285	179193285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	179193285	G	T	179193285	3	4	443	1	0	0	0	0	1	0	0	0	9212	1203	42	4	1280	4	MAML1	5	179193285	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	2361980	179193285	1721975	26	25736											
ZBTB9	221504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33423041	33423041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	33423041	A	G	33423041	3	3	443	1	0	0	0	0	1	0	0	0	17570	188	7	3	166	3	ZBTB9	6	33423041	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		33423041	137692026	27	25737											
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43333130	43333130	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	-	43333130	T	-	43333130	7	5	443	1	0	1	0	1	0	0	0	0	17848	1435	50	0	6427	0	ZNF318	6	43333130	Frame_Shift_Del	DEL	T	TCGA-BQ-5884-01A-11D-1589-08	9910089	43333130	127781937	28	25738											
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74229620	74229620	+	Missense_Mutation	SNP	T	T	C	rs11266800		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	74229620	T	C	74229620	3	2	443	1	0	0	0	0	1	0	0	0	4925	1792	62	3	1286	3	EEF1A1	6	74229620	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	30896490	74229620	96885447	29	25739											
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	87964665	87964665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	87964665	T	C	87964665	3	2	443	1	0	0	0	0	1	0	0	0	17838	1464	51	3	1348	3	ZNF292	6	87964665	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	13735045	87964665	83150402	30	25740											
HOXA4	3201	hgsc.bcm.edu	37	7	27169876	27169876	+	Silent	SNP	C	C	A	rs112274824		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	27169876	C	A	27169876	2	1	443	1	0	0	0	0	0	0	0	1	7301	639	23	4		4	HOXA4	7	27169876	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		27169876	131968787	31	25741											
CHN2	1124	broad.mit.edu	37	7	29440319	29440319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	29440319	C	A	29440319	3	1	443	1	0	0	0	0	1	0	0	0	3365	623	22	4	473	4	CHN2	7	29440319	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	2270443	29440319	129698344	32	25742											
SEMA3A	10371	broad.mit.edu	37	7	83636753	83636753	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	83636753	G	C	83636753	3	2	443	1	0	0	0	0	1	0	0	0	14037	1165	41	4	1291	4	SEMA3A	7	83636753	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	54196434	83636753	75501910	33	25743											
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92019370	92019370	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	92019370	T	C	92019370	2	2	443	1	0	0	0	0	0	0	0	1	630	1442	50	3		3	ANKIB1	7	92019370	Silent	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	8382617	92019370	67119293	34	25744											
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103019735	103019735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	103019735	A	C	103019735	3	2	443	1	0	0	0	0	1	0	0	0	14533	10	1	5	663	5	SLC26A5	7	103019735	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	11000365	103019735	56118928	35	25745											
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157046775	157046775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	157046775	A	G	157046775	3	3	443	1	0	0	0	0	1	0	0	0	16893	188	7	3	2900	3	UBE3C	7	157046775	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	54027040	157046775	2091888	36	25746											
PDLIM2	64236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	22452077	22452077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	22452077	C	T	22452077	3	4	443	1	0	0	0	0	1	0	0	0	11687	838	29	2	1132	2	PDLIM2	8	22452077	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		22452077	123911945	37	25747											
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87226722	87226722	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	87226722	T	A	87226722	4	1	443	1	0	0	0	0	0	1	0	0	14708	1617	56	5	83	5	SLC7A13	8	87226722	Nonsense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	64774645	87226722	59137300	38	25748											
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	123965936	123965936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	123965936	A	C	123965936	3	2	443	1	0	0	0	0	1	0	0	0	17688	130	5	5	2188	5	ZHX2	8	123965936	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	36739214	123965936	22398086	39	25749											
FAM83H	286077	hgsc.bcm.edu	37	8	144810122	144810122	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	144810122	G	A	144810122	2	1	443	1	0	0	0	0	0	0	0	1	5647	1136	40	1		1	FAM83H	8	144810122	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	20844186	144810122	1553900	40	25750											
VCP	7415	ucsc.edu	37	9	35062136	35062136	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	35062136	C	T	35062136	5	4	443	1	0	0	0	0	0	0	1	0	17152	927	32	2	1511	2	VCP	9	35062136	Splice_Site	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		35062136	106151295	41	25751											
SLC28A3	64078	hgsc.bcm.edu;broad.mit.edu	37	9	86955546	86955546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	86955546	C	A	86955546	3	1	443	1	0	0	0	0	1	0	0	0	14546	594	21	4	2144	4	SLC28A3	9	86955546	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	51893410	86955546	54257885	42	25752											
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114178598	114178598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	114178598	A	G	114178598	3	3	443	1	0	0	0	0	1	0	0	0	8178	217	8	3	3933	3	KIAA0368	9	114178598	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	27223052	114178598	27034833	43	25753											
NOTCH1	4851	hgsc.bcm.edu	37	9	139410162	139410162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	139410162	G	A	139410162	3	1	443	1	0	0	0	0	1	0	0	0	10554	1145	40	1	6087	1	NOTCH1	9	139410162	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	25231564	139410162	1803269	44	25754											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu	37	10	16871011	16871011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	16871011	T	A	16871011	3	1	443	1	0	0	0	0	1	0	0	0	4053	1548	54	5	322	5	CUBN	10	16871011	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08		16871011	118663736	45	25755											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32582651	32582651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	32582651	C	A	32582651	3	1	443	1	0	0	0	0	1	0	0	0	5162	710	25	4	2234	4	EPC1	10	32582651	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	15711640	32582651	102952096	46	25756											
ZNF33B	7582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43088537	43088537	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	43088537	T	G	43088537	3	3	443	1	0	0	0	0	1	0	0	0	17867	1792	62	5	479	5	ZNF33B	10	43088537	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	10505886	43088537	92446210	47	25757											
IFIT3	3437	broad.mit.edu	37	10	91098669	91098669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	91098669	C	A	91098669	3	1	443	1	0	0	0	0	1	0	0	0	7531	797	28	4	272	4	IFIT3	10	91098669	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	48010132	91098669	44436078	48	25758											
IFIT5	24138	broad.mit.edu;bcgsc.ca	37	10	91178386	91178387	+	Frame_Shift_Ins	INS	-	-	GCTC	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	GCTC	91178387	-	GCTC	91178386	7	5	443	1	0	1	1	0	0	0	0	0	7532	304	11	0	1436	0	IFIT5	10	91178386	Frame_Shift_Ins	INS	-	TCGA-BQ-5884-01A-11D-1589-08	79717	91178386	44356361	49	25759											
PDE6C	5146	broad.mit.edu;bcgsc.ca	37	10	95400272	95400272	+	Silent	SNP	G	G	A	rs200781437		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	95400272	G	A	95400272	2	1	443	1	0	0	0	0	0	0	0	1	11654	1190	42	2		2	PDE6C	10	95400272	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	4221886	95400272	40134475	50	25760											
PGM2L1	283209	hgsc.bcm.edu	37	11	74085550	74085550	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	74085550	G	A	74085550	2	1	443	1	0	0	0	0	0	0	0	1	11806	1195	42	2		2	PGM2L1	11	74085550	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08		74085550	60920966	51	25761											
AMOTL1	154810	broad.mit.edu	37	11	94602565	94602565	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	-	94602565	C	-	94602565	7	5	443	1	0	1	0	1	0	0	0	0	583	726	26	0	2737	0	AMOTL1	11	94602565	Frame_Shift_Del	DEL	C	TCGA-BQ-5884-01A-11D-1589-08	20517015	94602565	40403951	52	25762											
ZC3H12C	85463	broad.mit.edu;ucsc.edu	37	11	110036283	110036283	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	110036283	T	A	110036283	3	1	443	1	0	0	0	0	1	0	0	0	17575	1580	55	5	2495	5	ZC3H12C	11	110036283	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	15433718	110036283	24970233	53	25763											
CD27	939	hgsc.bcm.edu	37	12	6554354	6554354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	6554354	C	A	6554354	3	1	443	1	0	0	0	0	1	0	0	0	2992	564	20	4	95	4	CD27	12	6554354	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		6554354	127297541	54	25764											
ESPL1	9700	broad.mit.edu	37	12	53687097	53687097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	53687097	G	A	53687097	3	1	443	1	0	0	0	0	1	0	0	0	5255	1058	37	1	6320	1	ESPL1	12	53687097	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	47132743	53687097	80164798	55	25765											
SLC39A5	283375	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	56630209	56630209	+	Silent	SNP	C	C	G	rs139155884	byfrequency;alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	56630209	C	G	56630209	2	3	443	1	0	0	0	0	0	0	0	1	14634	871	31	4		4	SLC39A5	12	56630209	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	2943112	56630209	77221686	56	25766											
STAT2	6773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56742947	56742947	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	56742947	C	T	56742947	2	4	443	1	0	0	0	0	0	0	0	1	15277	695	24	2		2	STAT2	12	56742947	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	112738	56742947	77108948	57	25767											
DENR	8562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123253468	123253468	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	-	123253468	G	-	123253468	7	5	443	1	0	1	0	1	0	0	0	0	4440	1014	35	0	574	0	DENR	12	123253468	Frame_Shift_Del	DEL	G	TCGA-BQ-5884-01A-11D-1589-08	66510521	123253468	10598427	58	25768											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39265553	39265553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	39265553	A	G	39265553	3	3	443	1	0	0	0	0	1	0	0	0	6052	391	14	3	4074	3	FREM2	13	39265553	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		39265553	75904325	59	25769											
TPT1	7178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	45913688	45913688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	45913688	T	A	45913688	3	1	443	1	0	0	0	0	1	0	0	0	16441	1406	49	5	187	5	TPT1	13	45913688	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	6648135	45913688	69256190	60	25770											
MLNR	2862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	49796387	49796387	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	49796387	C	G	49796387	2	3	443	1	0	0	0	0	0	0	0	1	9639	871	31	4		4	MLNR	13	49796387	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	3882699	49796387	65373491	61	25771											
OR4N5	390437	bcgsc.ca	37	14	20612342	20612343	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	20612343	-	T	20612342	7	5	443	1	0	1	1	0	0	0	0	0	11086	797	28	0	450	0	OR4N5	14	20612342	Frame_Shift_Ins	INS	-	TCGA-BQ-5884-01A-11D-1589-08		20612342	86737198	62	25772											
APEX1	328	ucsc.edu	37	14	20925021	20925021	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	20925021	T	C	20925021	5	2	443	1	0	0	0	0	0	0	1	0	769	1710	59	3	451	3	APEX1	14	20925021	Splice_Site	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	312679	20925021	86424519	63	25773											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2122849	2122849	+	Splice_Site	SNP	G	G	A	rs45517218	alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	2122849	G	A	2122849	5	1	443	1	0	0	0	0	0	0	1	0	16618	985	34	2	2298	2	TSC2	16	2122849	Splice_Site	SNP	G	TCGA-BQ-5884-01A-11D-1589-08		2122849	88231904	64	25774											
NLRC3	197358	hgsc.bcm.edu	37	16	3598164	3598164	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	3598164	T	C	3598164	2	2	443	1	0	0	0	0	0	0	0	1	10475	1625	57	3		3	NLRC3	16	3598164	Silent	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	1475315	3598164	86756589	65	25775											
KRTAP4-9	100132386	broad.mit.edu	37	17	39261742	39261742	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	39261742	C	T	39261742	2	4	443	1	0	0	0	0	0	0	0	1	8564	805	28	2		2	KRTAP4-9	17	39261742	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		39261742	41933468	66	25776											
RSAD1	55316	broad.mit.edu	37	17	48559512	48559512	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	48559512	C	A	48559512	2	1	443	1	0	0	0	0	0	0	0	1	13707	759	27	4		4	RSAD1	17	48559512	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	9297770	48559512	32635698	67	25777											
TBC1D16	125058	bcgsc.ca	37	17	77915895	77915895	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	77915895	C	A	77915895	2	1	443	1	0	0	0	0	0	0	0	1	15617	581	21	4		4	TBC1D16	17	77915895	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	29356383	77915895	3279315	68	25778											
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79220316	79220316	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	79220316	C	T	79220316	2	4	443	1	0	0	0	0	0	0	0	1	14615	796	28	2		2	SLC38A10	17	79220316	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	1304421	79220316	1974894	69	25779											
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	56587630	56587630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	56587630	C	T	56587630	3	4	443	1	0	0	0	0	1	0	0	0	17984	565	20	2	2113	2	ZNF532	18	56587630	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		56587630	21489618	70	25780											
CCNE1	898	hgsc.bcm.edu;broad.mit.edu	37	19	30308341	30308341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	30308341	A	G	30308341	3	3	443	1	0	0	0	0	1	0	0	0	2922	101	4	3	373	3	CCNE1	19	30308341	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		30308341	28820642	71	25781											
HNRNPUL1	11100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41800265	41800265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	G	41800265	C	G	41800265	3	3	443	1	0	0	0	0	1	0	0	0	7281	681	24	4	1323	4	HNRNPUL1	19	41800265	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	11491924	41800265	17328718	72	25782											
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50769885	50769885	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	50769885	C	T	50769885	2	4	443	1	0	0	0	0	0	0	0	1	17664	639	23	1		1	ZFP64	20	50769885	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		50769885	12255635	73	25783											
IFNGR2	3460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34799207	34799207	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	T	34799207	A	T	34799207	2	4	443	1	0	0	0	0	0	0	0	1	7557	175	7	5		5	IFNGR2	21	34799207	Silent	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		34799207	13330688	74	25784											
MKL1	57591	broad.mit.edu	37	22	40813489	40813489	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	A	40813489	G	A	40813489	2	1	443	1	0	0	0	0	0	0	0	1	9608	1219	43	2		2	MKL1	22	40813489	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08		40813489	10491077	75	25785											
SHROOM4	57477	hgsc.bcm.edu	37	X	50350751	50350751	+	Missense_Mutation	SNP	G	G	C	rs201290098		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	C	50350751	G	C	50350751	3	2	443	1	0	0	0	0	1	0	0	0	14309	1386	48	4	1106	4	SHROOM4	23	50350751	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08		50350751	104919809	76	25786											
OSCP1	127700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36915923	36915923	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	36915923	C	T	36915923	2	4	444	1	0	0	0	0	0	0	0	1	11293	912	32	2		2	OSCP1	1	36915923	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		36915923	212334698	1	25787											
LRRC41	10489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46751890	46751890	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	46751890	T	G	46751890	2	3	444	1	0	0	0	0	0	0	0	1	9006	1683	59	5		5	LRRC41	1	46751890	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	9835967	46751890	202498731	2	25788											
CYB5RL	606495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	54640395	54640395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	54640395	C	T	54640395	3	4	444	1	0	0	0	0	1	0	0	0	4132	913	32	2	106	2	CYB5RL	1	54640395	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	7888505	54640395	194610226	3	25789											
KIAA1324	57535	broad.mit.edu;bcgsc.ca	37	1	109735396	109735396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	109735396	G	T	109735396	3	4	444	1	0	0	0	0	1	0	0	0	8230	1174	41	4	1901	4	KIAA1324	1	109735396	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	55095001	109735396	139515225	4	25790											
ARNT	405	bcgsc.ca	37	1	150804346	150804346	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	150804346	A	G	150804346	2	3	444	1	0	0	0	0	0	0	0	1	965	291	11	3		3	ARNT	1	150804346	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	41068950	150804346	98446275	5	25791											
NCSTN	23385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160326495	160326495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	160326495	C	T	160326495	3	4	444	1	0	0	0	0	1	0	0	0	10248	507	18	2	1803	2	NCSTN	1	160326495	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	9522149	160326495	88924126	6	25792											
FMO4	2329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171303821	171303822	+	Missense_Mutation	DNP	AT	AT	GC	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	GC	171303822	AT	GC	171303821	3	3	444	1	0	0	0	0	1	0	0	0	5964	217	8	3	1121	3	FMO4	1	171303821	Missense_Mutation	DNP	AT	TCGA-BQ-5885-01A-11D-1589-08	10977326	171303821	77946800	7	25793											
FAM129A	116496	broad.mit.edu	37	1	184943459	184943459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	184943459	G	T	184943459	3	4	444	1	0	0	0	0	1	0	0	0	5440	1136	40	4	2812	4	FAM129A	1	184943459	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	13639638	184943459	64307162	8	25794											
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236738095	236738095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	236738095	C	T	236738095	3	4	444	1	0	0	0	0	1	0	0	0	7034	632	22	2	3333	2	HEATR1	1	236738095	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	51794636	236738095	12512526	9	25795											
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236749736	236749736	+	Missense_Mutation	SNP	T	T	C	rs149170515		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	236749736	T	C	236749736	3	2	444	1	0	0	0	0	1	0	0	0	7034	1435	50	3	4826	3	HEATR1	1	236749736	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	11641	236749736	12500885	10	25796											
FMN2	56776	hgsc.bcm.edu	37	1	240256171	240256171	+	Silent	SNP	G	G	A	rs142232913		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	240256171	G	A	240256171	2	1	444	1	0	0	0	0	0	0	0	1	5957	1335	47	2		2	FMN2	1	240256171	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	3506435	240256171	8994450	11	25797											
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248366486	248366486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	248366486	C	A	248366486	3	1	444	1	0	0	0	0	1	0	0	0	11018	825	29	4	119	4	OR2M3	1	248366486	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	8110315	248366486	884135	12	25798											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27440797	27440797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	27440797	C	A	27440797	4	1	444	1	0	0	0	0	0	1	0	0	2567	489	17	4	141	4	CAD	2	27440797	Nonsense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		27440797	215758576	13	25799											
MAP4K3	8491	bcgsc.ca	37	2	39526944	39526944	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	39526944	T	C	39526944	5	2	444	1	0	0	0	0	0	0	1	0	9268	1536	53	3	1642	3	MAP4K3	2	39526944	Splice_Site	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	12086147	39526944	203672429	14	25800											
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55253513	55253514	+	Missense_Mutation	DNP	TT	TT	AG	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	AG	55253514	TT	AG	55253513	3	1	444	1	0	0	0	0	1	0	0	0	13741	1838	64	5	1922	5	RTN4	2	55253513	Missense_Mutation	DNP	TT	TCGA-BQ-5885-01A-11D-1589-08	15726569	55253513	187945860	15	25801											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	61505306	61505306	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	-	61505306	T	-	61505306	7	5	444	1	0	1	0	1	0	0	0	0	17077	1606	56	0	5373	0	USP34	2	61505306	Frame_Shift_Del	DEL	T	TCGA-BQ-5885-01A-11D-1589-08	6251793	61505306	181694067	16	25802											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73680677	73680677	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	73680677	T	C	73680677	2	2	444	1	0	0	0	0	0	0	0	1	535	1490	52	3		3	ALMS1	2	73680677	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	12175371	73680677	169518696	17	25803											
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74902749	74902749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	74902749	G	A	74902749	3	1	444	1	0	0	0	0	1	0	0	0	14048	1290	45	2	1512	2	SEMA4F	2	74902749	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	1222072	74902749	168296624	18	25804											
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	101670697	101670697	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	101670697	G	A	101670697	2	1	444	1	0	0	0	0	0	0	0	1	15637	1165	41	2		2	TBC1D8	2	101670697	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	26767948	101670697	141528676	19	25805											
TMEM177	80775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	120439354	120439354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	120439354	G	A	120439354	3	1	444	1	0	0	0	0	1	0	0	0	16106	1232	43	2	927	2	TMEM177	2	120439354	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	18768657	120439354	122760019	20	25806											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141819633	141819633	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	141819633	A	T	141819633	3	4	444	1	0	0	0	0	1	0	0	0	8962	101	4	5	12912	5	LRP1B	2	141819633	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	21380279	141819633	101379740	21	25807											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170083080	170083080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	170083080	A	G	170083080	3	3	444	1	0	0	0	0	1	0	0	0	8963	449	16	3	8913	3	LRP2	2	170083080	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	28263447	170083080	73116293	22	25808											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225422516	225422516	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	225422516	G	A	225422516	4	1	444	1	0	0	0	0	0	1	0	0	4058	1299	45	2	2242	2	CUL3	2	225422516	Nonsense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	55339436	225422516	17776857	23	25809											
USP40	55230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234449396	234449396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	234449396	G	T	234449396	3	4	444	1	0	0	0	0	1	0	0	0	17084	1000	35	4	2720	4	USP40	2	234449396	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	9026880	234449396	8749977	24	25810											
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234847784	234847784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	234847784	T	A	234847784	3	1	444	1	0	0	0	0	1	0	0	0	16604	1435	50	5	505	5	TRPM8	2	234847784	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	398388	234847784	8351589	25	25811											
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	10387742	10387742	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	10387742	G	A	10387742	2	1	444	1	0	0	0	0	0	0	0	1	1140	1277	45	2		2	ATP2B2	3	10387742	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08		10387742	187634688	26	25812											
CCBP2	1238	broad.mit.edu	37	3	42906259	42906259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	42906259	G	A	42906259	3	1	444	1	0	0	0	0	1	0	0	0	2736	1203	42	2	267	2	CCBP2	3	42906259	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	32518517	42906259	155116171	27	25813											
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	44762384	44762384	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	-	44762384	G	-	44762384	7	5	444	1	0	1	0	1	0	0	0	0	17962	962	34	0	81	0	ZNF502	3	44762384	Frame_Shift_Del	DEL	G	TCGA-BQ-5885-01A-11D-1589-08	1856125	44762384	153260046	28	25814											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46009968	46009968	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	46009968	C	T	46009968	2	4	444	1	0	0	0	0	0	0	0	1	6132	680	24	2		2	FYCO1	3	46009968	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	1247584	46009968	152012462	29	25815											
CCR5	1234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46415150	46415150	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	46415150	A	T	46415150	3	4	444	1	0	0	0	0	1	0	0	0	2946	217	8	5	759	5	CCR5	3	46415150	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	405182	46415150	151607280	30	25816											
MST1	4485	broad.mit.edu	37	3	49726048	49726048	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	49726048	T	A	49726048	3	1	444	1	0	0	0	0	1	0	0	0	9897	1812	63	5	2172	5	MST1	3	49726048	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	3310898	49726048	148296382	31	25817											
QTRTD1	79691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113798773	113798773	+	Missense_Mutation	SNP	G	G	A	rs199551955		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	113798773	G	A	113798773	3	1	444	1	0	0	0	0	1	0	0	0	12899	1116	39	1	789	1	QTRTD1	3	113798773	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	64072725	113798773	84223657	32	25818											
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	167083714	167083714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	167083714	T	G	167083714	3	3	444	1	0	0	0	0	1	0	0	0	17528	1812	63	5	2233	5	ZBBX	3	167083714	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	53284941	167083714	30938716	33	25819											
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172224404	172224404	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	172224404	T	A	172224404	3	1	444	1	0	0	0	0	1	0	0	0	16313	1464	51	5	125	5	TNFSF10	3	172224404	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	5140690	172224404	25798026	34	25820											
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	4199006	4199007	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	CT	4199007	TC	CT	4199006	3	2	444	1	0	0	0	0	1	0	0	0	11312	1551	54	3	291	3	OTOP1	4	4199006	Missense_Mutation	DNP	TC	TCGA-BQ-5885-01A-11D-1589-08		4199006	186955270	35	25821											
SDAD1	55153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76877179	76877179	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	76877179	C	T	76877179	2	4	444	1	0	0	0	0	0	0	0	1	13963	494	18	2		2	SDAD1	4	76877179	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	72678173	76877179	114277097	36	25822											
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123336554	123336554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	123336554	A	G	123336554	3	3	444	1	0	0	0	0	1	0	0	0	231	391	14	3	1304	3	ADAD1	4	123336554	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	46459375	123336554	67817722	37	25823											
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	125592787	125592787	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	125592787	A	G	125592787	2	3	444	1	0	0	0	0	0	0	0	1	677	98	4	3		3	ANKRD50	4	125592787	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	2256233	125592787	65561489	38	25824											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	128804442	128804442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	128804442	C	T	128804442	3	4	444	1	0	0	0	0	1	0	0	0	12105	710	25	2	162	2	PLK4	4	128804442	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	3211655	128804442	62349834	39	25825											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	151829520	151829520	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	151829520	G	A	151829520	4	1	444	1	0	0	0	0	0	1	0	0	8938	1328	46	2	7324	2	LRBA	4	151829520	Nonsense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	23025078	151829520	39324756	40	25826											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187540288	187540291	+	Frame_Shift_Del	DEL	TCCA	TCCA	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	TCCA	TCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	-	187540291	TCCA	-	187540288	7	5	444	1	0	1	0	1	0	0	0	0	5696	1538	54	0	6386	0	FAT1	4	187540288	Frame_Shift_Del	DEL	TCCA	TCGA-BQ-5885-01A-11D-1589-08	35710768	187540288	3613988	41	25827											
GOLPH3	64083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32126417	32126417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	32126417	C	A	32126417	3	1	444	1	0	0	0	0	1	0	0	0	6575	912	32	4	102	4	GOLPH3	5	32126417	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		32126417	148788843	42	25828											
GPBP1	65056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	56545332	56545332	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	56545332	T	G	56545332	3	3	444	1	0	0	0	0	1	0	0	0	6602	1493	52	5	952	5	GPBP1	5	56545332	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	24418915	56545332	124369928	43	25829											
TRIM23	373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	64905230	64905230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	64905230	A	T	64905230	3	4	444	1	0	0	0	0	1	0	0	0	16509	420	15	5	931	5	TRIM23	5	64905230	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	8359898	64905230	116010030	44	25830											
CD180	4064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66478708	66478708	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	66478708	T	G	66478708	2	3	444	1	0	0	0	0	0	0	0	1	2974	1579	55	5		5	CD180	5	66478708	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	1573478	66478708	114436552	45	25831											
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	96328816	96328816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	96328816	T	A	96328816	3	1	444	1	0	0	0	0	1	0	0	0	8871	1493	52	5	1247	5	LNPEP	5	96328816	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	29850108	96328816	84586444	46	25832											
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	114469835	114469835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	114469835	A	G	114469835	3	3	444	1	0	0	0	0	1	0	0	0	16522	159	6	3	942	3	TRIM36	5	114469835	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	18141019	114469835	66445425	47	25833											
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140228538	140228538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	140228538	C	A	140228538	3	1	444	1	0	0	0	0	1	0	0	0	11538	594	21	4	460	4	PCDHA9	5	140228538	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	25758703	140228538	40686722	48	25834											
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140784720	140784720	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	140784720	G	C	140784720	3	2	444	1	0	0	0	0	1	0	0	0	11568	1261	44	4	2203	4	PCDHGA9	5	140784720	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	556182	140784720	40130540	49	25835											
PCDHGC3	5098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140856636	140856636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	140856636	A	G	140856636	3	3	444	1	0	0	0	0	1	0	0	0	11576	217	8	3	955	3	PCDHGC3	5	140856636	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	71916	140856636	40058624	50	25836											
NOTCH4	4855	broad.mit.edu	37	6	32188966	32188966	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	32188966	G	A	32188966	2	1	444	1	0	0	0	0	0	0	0	1	10558	1136	40	1		1	NOTCH4	6	32188966	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08		32188966	138926101	51	25837											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56347659	56347659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	56347659	A	G	56347659	3	3	444	1	0	0	0	0	1	0	0	0	4785	131	5	3	2220	3	DST	6	56347659	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	24158693	56347659	114767408	52	25838											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106992678	106992678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	106992678	C	A	106992678	3	1	444	1	0	0	0	0	1	0	0	0	430	826	29	4	4000	4	AIM1	6	106992678	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	50645019	106992678	64122389	53	25839											
SLC35D3	340146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	137243696	137243696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	137243696	G	C	137243696	3	2	444	1	0	0	0	0	1	0	0	0	14596	1261	44	4	132	4	SLC35D3	6	137243696	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	30251018	137243696	33871371	54	25840											
TAX1BP1	8887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27856087	27856087	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	27856087	T	C	27856087	2	2	444	1	0	0	0	0	0	0	0	1	15606	1461	51	3		3	TAX1BP1	7	27856087	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		27856087	131282576	55	25841											
ZNF679	168417	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	63721262	63721262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	63721262	G	A	63721262	3	1	444	1	0	0	0	0	1	0	0	0	18098	943	33	2	227	2	ZNF679	7	63721262	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	35865175	63721262	95417401	56	25842											
TPST1	8460	hgsc.bcm.edu	37	7	65705943	65705943	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	65705943	C	G	65705943	2	3	444	1	0	0	0	0	0	0	0	1	16439	581	21	4		4	TPST1	7	65705943	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	1984681	65705943	93432720	57	25843											
DMTF1	9988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	86802963	86802966	+	In_Frame_Del	DEL	AAGG	AAGG	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	AAGG	AAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	-	86802966	AAGG	-	86802963	7	5	444	1	0	1	0	1	0	0	0	0	4594	14	1	0	454	0	DMTF1	7	86802963	In_Frame_Del	DEL	AAGG	TCGA-BQ-5885-01A-11D-1589-08	21097020	86802963	72335700	58	25844											
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91631868	91631868	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	91631868	A	G	91631868	2	3	444	1	0	0	0	0	0	0	0	1	459	69	3	3		3	AKAP9	7	91631868	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	4828905	91631868	67506795	59	25845											
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92119227	92119227	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	92119227	T	C	92119227	5	2	444	1	0	0	0	0	0	0	1	0	11742	1594	55	3	426	3	PEX1	7	92119227	Splice_Site	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	487359	92119227	67019436	60	25846											
LMTK2	22853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	97823720	97823720	+	Missense_Mutation	SNP	G	G	C	rs199600469		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	97823720	G	C	97823720	3	2	444	1	0	0	0	0	1	0	0	0	8866	1059	37	4	3985	4	LMTK2	7	97823720	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	5704493	97823720	61314943	61	25847											
MGAM	8972	hgsc.bcm.edu	37	7	141759733	141759733	+	Silent	SNP	A	A	G	rs73740235		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	141759733	A	G	141759733	2	3	444	1	0	0	0	0	0	0	0	1	9548	98	4	3		3	MGAM	7	141759733	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	43936013	141759733	17378930	62	25848											
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17401959	17401959	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	17401959	G	T	17401959	5	4	444	1	0	0	0	0	0	0	1	0	14710	1014	35	4	506	4	SLC7A2	8	17401959	Splice_Site	SNP	G	TCGA-BQ-5885-01A-11D-1589-08		17401959	128962063	63	25849											
ADAMDEC1	27299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	24256052	24256052	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	-	24256052	C	-	24256052	7	5	444	1	0	1	0	1	0	0	0	0	254	506	18	0	780	0	ADAMDEC1	8	24256052	Frame_Shift_Del	DEL	C	TCGA-BQ-5885-01A-11D-1589-08	6854093	24256052	122107970	64	25850											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25715868	25715868	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	25715868	G	A	25715868	2	1	444	1	0	0	0	0	0	0	0	1	4883	933	33	2		2	EBF2	8	25715868	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	1459816	25715868	120648154	65	25851											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48826505	48826505	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	48826505	G	A	48826505	4	1	444	1	0	0	0	0	0	1	0	0	12531	1066	37	1	9900	1	PRKDC	8	48826505	Nonsense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	23110637	48826505	97537517	66	25852											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu	37	8	71126196	71126196	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	71126196	A	C	71126196	2	2	444	1	0	0	0	0	0	0	0	1	10236	175	7	5		5	NCOA2	8	71126196	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	22299691	71126196	75237826	67	25853											
SYBU	55638	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110587763	110587763	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	-	110587763	T	-	110587763	7	5	444	1	0	1	0	1	0	0	0	0	15439	1667	58	0	631	0	SYBU	8	110587763	Frame_Shift_Del	DEL	T	TCGA-BQ-5885-01A-11D-1589-08	39461567	110587763	35776259	68	25854											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133854952	133854952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	133854952	G	C	133854952	3	2	444	1	0	0	0	0	1	0	0	0	11839	962	34	4	2746	4	PHF20L1	8	133854952	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	23267189	133854952	12509070	69	25855											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144944250	144944250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	144944250	G	T	144944250	3	4	444	1	0	0	0	0	1	0	0	0	5192	1000	35	4	4094	4	EPPK1	8	144944250	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	11089298	144944250	1419772	70	25856											
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu	37	8	145806407	145806407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	145806407	T	C	145806407	3	2	444	1	0	0	0	0	1	0	0	0	884	1725	60	3	3049	3	ARHGAP39	8	145806407	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	862157	145806407	557615	71	25857											
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	72901129	72901129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	72901129	A	T	72901129	3	4	444	1	0	0	0	0	1	0	0	0	14799	72	3	5	1025	5	SMC5	9	72901129	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08		72901129	68312302	72	25858											
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118997553	118997553	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	118997553	C	G	118997553	3	3	444	1	0	0	0	0	1	0	0	0	11439	623	22	4	2395	4	PAPPA	9	118997553	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	46096424	118997553	22215878	73	25859											
ITGA8	8516	broad.mit.edu	37	10	15713632	15713632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	15713632	C	A	15713632	3	1	444	1	0	0	0	0	1	0	0	0	7889	710	25	4	2466	4	ITGA8	10	15713632	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		15713632	119821115	74	25860											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	64960365	64960365	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	-	64960365	A	-	64960365	7	5	444	1	0	1	0	1	0	0	0	0	7957	372	13	0	2539	0	JMJD1C	10	64960365	Frame_Shift_Del	DEL	A	TCGA-BQ-5885-01A-11D-1589-08	49246733	64960365	70574382	75	25861											
USP54	159195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75294429	75294429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	75294429	G	A	75294429	3	1	444	1	0	0	0	0	1	0	0	0	17097	942	33	2	3862	2	USP54	10	75294429	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	10334064	75294429	60240318	76	25862											
PI4K2A	55361	hgsc.bcm.edu;broad.mit.edu	37	10	99400806	99400806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	99400806	G	A	99400806	3	1	444	1	0	0	0	0	1	0	0	0	11878	1059	37	1	309	1	PI4K2A	10	99400806	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	24106377	99400806	36133941	77	25863											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104130513	104130513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	104130513	C	A	104130513	3	1	444	1	0	0	0	0	1	0	0	0	6278	681	24	4	3663	4	GBF1	10	104130513	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	4729707	104130513	31404234	78	25864											
CNNM2	54805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104679308	104679308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	104679308	G	T	104679308	3	4	444	1	0	0	0	0	1	0	0	0	3615	933	33	4	1073	4	CNNM2	10	104679308	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	548795	104679308	30855439	79	25865											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108412294	108412294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	108412294	G	A	108412294	3	1	444	1	0	0	0	0	1	0	0	0	14943	1174	41	2	1455	2	SORCS1	10	108412294	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	3732986	108412294	27122453	80	25866											
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	127455494	127455494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	127455494	T	G	127455494	3	3	444	1	0	0	0	0	1	0	0	0	9667	1754	61	5	266	5	MMP21	10	127455494	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	19043200	127455494	8079253	81	25867											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	601639	601639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	601639	T	C	601639	3	2	444	1	0	0	0	0	1	0	0	0	11868	1551	54	3	1124	3	PHRF1	11	601639	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		601639	134404877	82	25868											
MUC6	4588	broad.mit.edu	37	11	1027279	1027279	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	1027279	G	A	1027279	2	1	444	1	0	0	0	0	0	0	0	1	9987	1136	40	1		1	MUC6	11	1027279	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	425640	1027279	133979237	83	25869											
FAU	2197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64888258	64888258	+	Missense_Mutation	SNP	C	C	A	rs3202210	alternate_allele	TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	64888258	C	A	64888258	3	1	444	1	0	0	0	0	1	0	0	0	5701	912	32	4	108	4	FAU	11	64888258	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	63860979	64888258	70118258	84	25870											
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66260242	66260242	+	Silent	SNP	G	G	A	rs200674271		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	66260242	G	A	66260242	2	1	444	1	0	0	0	0	0	0	0	1	4730	1045	37	1		1	DPP3	11	66260242	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	1371984	66260242	68746274	85	25871											
FOLR2	2350	hgsc.bcm.edu	37	11	71932098	71932098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	71932098	A	G	71932098	3	3	444	1	0	0	0	0	1	0	0	0	5989	188	7	3	341	3	FOLR2	11	71932098	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	5671856	71932098	63074418	86	25872											
DGAT2	84649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	75509461	75509461	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	75509461	C	T	75509461	2	4	444	1	0	0	0	0	0	0	0	1	4460	581	21	2		2	DGAT2	11	75509461	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	3577363	75509461	59497055	87	25873											
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	99690367	99690367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	99690367	A	C	99690367	3	2	444	1	0	0	0	0	1	0	0	0	3646	43	2	5	154	5	CNTN5	11	99690367	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	24180906	99690367	35316149	88	25874											
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118771686	118771686	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	118771686	A	C	118771686	3	2	444	1	0	0	0	0	1	0	0	0	1382	330	12	5	1745	5	BCL9L	11	118771686	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	19081319	118771686	16234830	89	25875											
OR8D1	283159	broad.mit.edu	37	11	124179984	124179984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	124179984	G	T	124179984	3	4	444	1	0	0	0	0	1	0	0	0	11238	1290	45	4	250	4	OR8D1	11	124179984	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	5408298	124179984	10826532	90	25876											
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124310919	124310919	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	124310919	C	T	124310919	2	4	444	1	0	0	0	0	0	0	0	1	11237	639	23	1		1	OR8B8	11	124310919	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	130935	124310919	10695597	91	25877											
C3AR1	719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	8212439	8212439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	8212439	C	T	8212439	3	4	444	1	0	0	0	0	1	0	0	0	2207	710	25	2	1109	2	C3AR1	12	8212439	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		8212439	125639456	92	25878											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	31586129	31586130	+	In_Frame_Ins	INS	-	-	GGCGAA	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	GGCGAA	31586130	-	GGCGAA	31586129	7	5	444	1	0	1	1	0	0	0	0	0	4439	1580	55	0	1814	0	DENND5B	12	31586129	In_Frame_Ins	INS	-	TCGA-BQ-5885-01A-11D-1589-08	23373690	31586129	102265766	93	25879			1	49		2	2	17	N	T_-	6.87388e-05
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	31586145	31586145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	31586145	T	C	31586145	3	2	444	1	0	0	0	0	1	0	0	0	4439	1792	62	3	1830	3	DENND5B	12	31586145	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	16	31586145	102265750	94	25880			1	49		2	2	17	N	T_-	6.87388e-05
KRT77	374454	hgsc.bcm.edu	37	12	53086340	53086341	+	Missense_Mutation	DNP	AG	AG	CA	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	CA	53086341	AG	CA	53086340	3	2	444	1	0	0	0	0	1	0	0	0	8497	188	7	5	456	5	KRT77	12	53086340	Missense_Mutation	DNP	AG	TCGA-BQ-5885-01A-11D-1589-08	21500195	53086340	80765555	95	25881											
ATF7	11016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53931334	53931334	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	53931334	A	T	53931334	2	4	444	1	0	0	0	0	0	0	0	1	1086	175	7	5		5	ATF7	12	53931334	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	844994	53931334	79920561	96	25882											
PRIM1	5557	hgsc.bcm.edu	37	12	57135252	57135252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	57135252	G	C	57135252	3	2	444	1	0	0	0	0	1	0	0	0	12500	1020	36	4	333	4	PRIM1	12	57135252	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	3203918	57135252	76716643	97	25883											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64521913	64521913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	64521913	C	A	64521913	3	1	444	1	0	0	0	0	1	0	0	0	15157	855	30	4	2895	4	SRGAP1	12	64521913	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	7386661	64521913	69329982	98	25884											
EID3	493861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104698219	104698219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	104698219	T	A	104698219	3	1	444	1	0	0	0	0	1	0	0	0	4991	1490	52	5	509	5	EID3	12	104698219	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	40176306	104698219	29153676	99	25885											
DTX1	1840	hgsc.bcm.edu	37	12	113515832	113515832	+	Missense_Mutation	SNP	C	C	A	rs190645916		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	113515832	C	A	113515832	3	1	444	1	0	0	0	0	1	0	0	0	4795	507	18	4	869	4	DTX1	12	113515832	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	8817613	113515832	20336063	100	25886											
SLC15A4	121260	bcgsc.ca	37	12	129278885	129278885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	129278885	G	C	129278885	3	2	444	1	0	0	0	0	1	0	0	0	14414	963	34	4	147	4	SLC15A4	12	129278885	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	15763053	129278885	4573010	101	25887											
FLT1	2321	broad.mit.edu;bcgsc.ca	37	13	29001983	29001983	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	29001983	G	A	29001983	2	1	444	1	0	0	0	0	0	0	0	1	5948	1136	40	1		1	FLT1	13	29001983	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08		29001983	86167895	102	25888											
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	111885553	111885553	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	111885553	G	A	111885553	2	1	444	1	0	0	0	0	0	0	0	1	911	956	33	2		2	ARHGEF7	13	111885553	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	82883570	111885553	3284325	103	25889											
SAV1	60485	hgsc.bcm.edu	37	14	51131903	51131903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	51131903	C	T	51131903	3	4	444	1	0	0	0	0	1	0	0	0	13869	710	25	2	638	2	SAV1	14	51131903	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		51131903	56217637	104	25890											
YLPM1	56252	bcgsc.ca	37	14	75230946	75230947	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	75230947	-	C	75230946	7	5	444	1	0	1	1	0	0	0	0	0	17498	1087	38	0	756	0	YLPM1	14	75230946	Frame_Shift_Ins	INS	-	TCGA-BQ-5885-01A-11D-1589-08	24099043	75230946	32118594	105	25891											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18841596	18841597	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	TT	18841597	GC	TT	18841596	3	4	444	1	0	0	0	0	1	0	0	0	14808	1319	46	4	2145	4	SMG1	16	18841596	Missense_Mutation	DNP	GC	TCGA-BQ-5885-01A-11D-1589-08		18841596	71513157	106	25892											
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27374876	27374876	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	27374876	C	T	27374876	4	4	444	1	0	0	0	0	0	1	0	0	7705	595	21	2	2255	2	IL4R	16	27374876	Nonsense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	8533280	27374876	62979877	107	25893											
NKD1	85407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	50667463	50667463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	50667463	C	G	50667463	3	3	444	1	0	0	0	0	1	0	0	0	10448	739	26	4	1222	4	NKD1	16	50667463	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	23292587	50667463	39687290	108	25894											
TRPV3	162514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3458126	3458126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	3458126	C	T	3458126	3	4	444	1	0	0	0	0	1	0	0	0	16609	864	30	2	2421	2	TRPV3	17	3458126	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		3458126	77737084	109	25895											
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	13977738	13977738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	13977738	A	C	13977738	3	2	444	1	0	0	0	0	1	0	0	0	3764	333	12	5	148	5	COX10	17	13977738	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	10519612	13977738	67217472	110	25896											
KRT13	3860	broad.mit.edu	37	17	39658760	39658760	+	Silent	SNP	G	G	A	rs147022064	alternate_allele	TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	39658760	G	A	39658760	2	1	444	1	0	0	0	0	0	0	0	1	8457	1048	37	1		1	KRT13	17	39658760	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	25681022	39658760	41536450	111	25897											
TBX4	9496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	59544913	59544913	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	59544913	G	C	59544913	2	2	444	1	0	0	0	0	0	0	0	1	15672	1364	48	4		4	TBX4	17	59544913	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	19886153	59544913	21650297	112	25898											
TEX19	400629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80320426	80320426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	80320426	C	A	80320426	3	1	444	1	0	0	0	0	1	0	0	0	15792	680	24	4	402	4	TEX19	17	80320426	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	20775513	80320426	874784	113	25899											
PSMA8	143471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	23731852	23731852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	23731852	A	G	23731852	3	3	444	1	0	0	0	0	1	0	0	0	12683	43	2	3	288	3	PSMA8	18	23731852	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08		23731852	54345396	114	25900											
ZNF57	126295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2917763	2917763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	2917763	C	T	2917763	3	4	444	1	0	0	0	0	1	0	0	0	18013	478	17	2	1158	2	ZNF57	19	2917763	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		2917763	56211220	115	25901											
ZNF846	162993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9868191	9868191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	9868191	A	G	9868191	3	3	444	1	0	0	0	0	1	0	0	0	18204	72	3	3	43	3	ZNF846	19	9868191	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	6950428	9868191	49260792	116	25902											
UNC13A	23025	broad.mit.edu	37	19	17778940	17778940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	17778940	G	A	17778940	3	1	444	1	0	0	0	0	1	0	0	0	16996	1086	38	1	4805	1	UNC13A	19	17778940	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	7910749	17778940	41350043	117	25903											
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	19603133	19603133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	19603133	G	T	19603133	3	4	444	1	0	0	0	0	1	0	0	0	6267	1165	41	4	294	4	GATAD2A	19	19603133	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	1824193	19603133	39525850	118	25904											
C19orf40	91442	broad.mit.edu	37	19	33467343	33467343	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	33467343	G	C	33467343	3	2	444	1	0	0	0	0	1	0	0	0	1925	943	33	4	417	4	C19orf40	19	33467343	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	13864210	33467343	25661640	119	25905											
PAK4	10298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39667267	39667267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	39667267	G	T	39667267	3	4	444	1	0	0	0	0	1	0	0	0	11410	971	34	4	1419	4	PAK4	19	39667267	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	6199924	39667267	19461716	120	25906											
SIRPB1	10326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1551504	1551504	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	1551504	T	A	1551504	3	1	444	1	0	0	0	0	1	0	0	0	14346	1406	49	5	173	5	SIRPB1	20	1551504	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		1551504	61474016	121	25907											
GFRA4	64096	hgsc.bcm.edu	37	20	3641291	3641291	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	3641291	A	C	3641291	2	2	444	1	0	0	0	0	0	0	0	1	6357	407	15	5		5	GFRA4	20	3641291	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	2089787	3641291	59384229	122	25908											
PLCG1	5335	hgsc.bcm.edu	37	20	39796566	39796566	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	39796566	C	G	39796566	3	3	444	1	0	0	0	0	1	0	0	0	12042	825	29	4	2454	4	PLCG1	20	39796566	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	36155275	39796566	23228954	123	25909											
SLMO2	51012	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57613690	57613690	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	57613690	C	T	57613690	5	4	444	1	0	0	0	0	0	0	1	0	14764	811	28	2	572	2	SLMO2	20	57613690	Splice_Site	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	17817124	57613690	5411830	124	25910											
SF3A1	10291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30737847	30737847	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	30737847	T	A	30737847	3	1	444	1	0	0	0	0	1	0	0	0	14159	1551	54	5	1516	5	SF3A1	22	30737847	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		30737847	20566719	125	25911											
APOBEC3G	60489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39482535	39482535	+	Silent	SNP	C	C	G	rs138907659	alternate_allele	TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	39482535	C	G	39482535	2	3	444	1	0	0	0	0	0	0	0	1	794	639	23	4		4	APOBEC3G	22	39482535	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	8744688	39482535	11822031	126	25912											
L3MBTL2	83746	ucsc.edu	37	22	41621938	41621938	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	41621938	G	A	41621938	2	1	444	1	0	0	0	0	0	0	0	1	8599	1074	38	1		1	L3MBTL2	22	41621938	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	2139403	41621938	9682628	127	25913											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	46804928	46804928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	T	46804928	C	T	46804928	3	4	444	1	0	0	0	0	1	0	0	0	3223	739	26	2	3961	2	CELSR1	22	46804928	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	5182990	46804928	4499638	128	25914											
KLHDC7B	113730	hgsc.bcm.edu	37	22	50987534	50987534	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	C	50987534	T	C	50987534	2	2	444	1	0	0	0	0	0	0	0	1	8368	1567	55	3		3	KLHDC7B	22	50987534	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	4182606	50987534	317032	129	25915											
RLIM	51132	bcgsc.ca	37	X	73811737	73811737	+	Silent	SNP	T	T	A	rs113198776		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	A	73811737	T	A	73811737	2	1	444	1	0	0	0	0	0	0	0	1	13403	1799	63	5		5	RLIM	23	73811737	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		73811737	81458823	130	25916	324	2									
RLIM	51132	bcgsc.ca	37	X	73811739	73811739	+	Missense_Mutation	SNP	A	A	G	rs201164156		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	73811739	A	G	73811739	3	3	444	1	0	0	0	0	1	0	0	0	13403	246	9	3	467	3	RLIM	23	73811739	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	2	73811739	81458821	131	25917	324	2									
KLHL4	56062	broad.mit.edu;bcgsc.ca	37	X	86887393	86887404	+	In_Frame_Del	DEL	GGACTGTGATGC	GGACTGTGATGC	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	GGACTGTGATGC	GGACTGTGATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	-	86887404	GGACTGTGATGC	-	86887393	7	5	444	1	0	1	0	1	0	0	0	0	8398	1357	47	0	1534	0	KLHL4	23	86887393	In_Frame_Del	DEL	GGACTGTGATGC	TCGA-BQ-5885-01A-11D-1589-08	13075654	86887393	68383167	132	25918			2	50		2	2	18	N	GGACTGTGATGC_A	7.303482e-05
KLHL4	56062	bcgsc.ca	37	X	86887410	86887410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	86887410	A	G	86887410	3	3	444	1	0	0	0	0	1	0	0	0	8398	217	8	3	1551	3	KLHL4	23	86887410	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	17	86887410	68383150	133	25919			2	50		2	2	18	N	GGACTGTGATGC_A	7.303482e-05
AGTR2	186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	115303624	115303624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	G	115303624	T	G	115303624	3	3	444	1	0	0	0	0	1	0	0	0	402	1667	58	5	93	5	AGTR2	23	115303624	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	28416214	115303624	39966936	134	25920											
RERE	473	broad.mit.edu;bcgsc.ca	37	1	8420197	8420197	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	8420197	G	C	8420197	3	2	445	1	0	0	0	0	1	0	0	0	13244	1232	43	4	1354	4	RERE	1	8420197	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		8420197	240830424	1	25921											
AIM1L	55057	broad.mit.edu	37	1	26671979	26671979	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	26671979	A	T	26671979	2	4	445	1	0	0	0	0	0	0	0	1	431	435	15	5		5	AIM1L	1	26671979	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	18251782	26671979	222578642	2	25922											
COL11A1	1301	broad.mit.edu	37	1	103428308	103428308	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	103428308	G	A	103428308	2	1	445	1	0	0	0	0	0	0	0	1	3669	1103	39	1		1	COL11A1	1	103428308	Silent	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	76756329	103428308	145822313	3	25923											
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110709565	110709565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	110709565	G	A	110709565	3	1	445	1	0	0	0	0	1	0	0	0	14693	971	34	2	16	2	SLC6A17	1	110709565	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	7281257	110709565	138541056	4	25924											
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201984378	201984378	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	201984378	G	C	201984378	3	2	445	1	0	0	0	0	1	0	0	0	5057	1116	39	4	1073	4	ELF3	1	201984378	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	91274813	201984378	47266243	5	25925											
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230883264	230883264	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	230883264	C	G	230883264	3	3	445	1	0	0	0	0	1	0	0	0	2634	623	22	4	24	4	CAPN9	1	230883264	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	28898886	230883264	18367357	6	25926											
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62066806	62066806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	62066806	G	A	62066806	3	1	445	1	0	0	0	0	1	0	0	0	5476	1377	48	2	665	2	FAM161A	2	62066806	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		62066806	181132567	7	25927											
LMAN2L	81562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97373520	97373520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	97373520	T	C	97373520	3	2	445	1	0	0	0	0	1	0	0	0	8846	1725	60	3	219	3	LMAN2L	2	97373520	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	35306714	97373520	145825853	8	25928											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170072853	170072853	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	170072853	A	G	170072853	2	3	445	1	0	0	0	0	0	0	0	1	8963	291	11	3		3	LRP2	2	170072853	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	72699333	170072853	73126520	9	25929											
SATB2	23314	hgsc.bcm.edu	37	2	200320598	200320598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	200320598	C	G	200320598	3	3	445	1	0	0	0	0	1	0	0	0	13867	536	19	4	2078	4	SATB2	2	200320598	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	30247745	200320598	42878775	10	25930											
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37340849	37340849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	37340849	T	C	37340849	3	2	445	1	0	0	0	0	1	0	0	0	6562	1609	56	3	1177	3	GOLGA4	3	37340849	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08		37340849	160681581	11	25931											
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108788509	108788509	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	108788509	T	A	108788509	3	1	445	1	0	0	0	0	1	0	0	0	9708	1841	64	5	2249	5	MORC1	3	108788509	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	71447660	108788509	89233921	12	25932											
PODXL2	50512	broad.mit.edu	37	3	127379564	127379564	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	127379564	A	G	127379564	2	3	445	1	0	0	0	0	0	0	0	1	12188	175	7	3		3	PODXL2	3	127379564	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	18591055	127379564	70642866	13	25933											
TACC3	10460	hgsc.bcm.edu	37	4	1741439	1741439	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	1741439	C	G	1741439	3	3	445	1	0	0	0	0	1	0	0	0	15515	478	17	4	1990	4	TACC3	4	1741439	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		1741439	189412837	14	25934											
DAPP1	27071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100787280	100787280	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	100787280	T	G	100787280	5	3	445	1	0	0	0	0	0	0	1	0	4241	1710	59	5	806	5	DAPP1	4	100787280	Splice_Site	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	99045841	100787280	90366996	15	25935											
SLC30A5	64924	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	68399835	68399835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	68399835	A	G	68399835	3	3	445	1	0	0	0	0	1	0	0	0	14571	14	1	3	334	3	SLC30A5	5	68399835	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08		68399835	112515425	16	25936											
F2RL2	2151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75913735	75913735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	75913735	A	G	75913735	3	3	445	1	0	0	0	0	1	0	0	0	5347	131	5	3	331	3	F2RL2	5	75913735	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	7513900	75913735	105001525	17	25937											
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78415082	78415082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	78415082	T	C	78415082	3	2	445	1	0	0	0	0	1	0	0	0	1425	1739	60	3	177	3	BHMT	5	78415082	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	2501347	78415082	102500178	18	25938											
PCDHB3	56132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140481178	140481178	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	140481178	T	C	140481178	2	2	445	1	0	0	0	0	0	0	0	1	11550	1471	51	3		3	PCDHB3	5	140481178	Silent	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	62066096	140481178	40434082	19	25939											
PFN3	345456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176827191	176827191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	176827191	T	C	176827191	3	2	445	1	0	0	0	0	1	0	0	0	11776	1628	57	3	30	3	PFN3	5	176827191	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	36346013	176827191	4088069	20	25940											
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30893383	30893383	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	30893383	G	C	30893383	3	2	445	1	0	0	0	0	1	0	0	0	17136	1232	43	4	3048	4	VARS2	6	30893383	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		30893383	140221684	21	25941											
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43226956	43226956	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	43226956	C	G	43226956	2	3	445	1	0	0	0	0	0	0	0	1	16688	900	32	4		4	TTBK1	6	43226956	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	12333573	43226956	127888111	22	25942											
GPR110	266977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46977043	46977043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	46977043	G	A	46977043	3	1	445	1	0	0	0	0	1	0	0	0	6634	1232	43	2	624	2	GPR110	6	46977043	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	3750087	46977043	124138024	23	25943											
AIM1	202	hgsc.bcm.edu	37	6	106960432	106960432	+	Silent	SNP	C	C	G	rs146137130	byfrequency;alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	106960432	C	G	106960432	2	3	445	1	0	0	0	0	0	0	0	1	430	639	23	4		4	AIM1	6	106960432	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	59983389	106960432	64154635	24	25944											
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	121576521	121576521	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	121576521	T	A	121576521	2	1	445	1	0	0	0	0	0	0	0	1	2346	1509	53	5		5	C6orf170	6	121576521	Silent	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	14616089	121576521	49538546	25	25945											
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	143091819	143091819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	143091819	T	C	143091819	3	2	445	1	0	0	0	0	1	0	0	0	7194	1464	51	3	3307	3	HIVEP2	6	143091819	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	21515298	143091819	28023248	26	25946											
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122269335	122269335	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	122269335	A	G	122269335	2	3	445	1	0	0	0	0	0	0	0	1	2573	214	8	3		3	CADPS2	7	122269335	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08		122269335	36869328	27	25947											
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	135276257	135276257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	135276257	T	G	135276257	3	3	445	1	0	0	0	0	1	0	0	0	10766	1771	62	5	1575	5	NUP205	7	135276257	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	13006922	135276257	23862406	28	25948											
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	54764571	54764572	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	-	54764572	AT	-	54764571	7	5	445	1	0	1	0	1	0	0	0	0	13316	217	8	0	114	0	RGS20	8	54764571	Frame_Shift_Del	DEL	AT	TCGA-BQ-5886-01A-11D-1589-08		54764571	91599451	29	25949	325	2									
RGS20	8601	bcgsc.ca	37	8	54764573	54764573	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	54764573	T	C	54764573	2	2	445	1	0	0	0	0	0	0	0	1	13316	1771	62	3		3	RGS20	8	54764573	Silent	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	2	54764573	91599449	30	25950	325	2									
PPAPDC2	403313	hgsc.bcm.edu	37	9	4662477	4662477	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	4662477	C	A	4662477	2	1	445	1	0	0	0	0	0	0	0	1	12302	755	27	4		4	PPAPDC2	9	4662477	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		4662477	136550954	31	25951											
FANCG	2189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35077002	35077002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	35077002	A	G	35077002	3	3	445	1	0	0	0	0	1	0	0	0	5675	159	6	3	1161	3	FANCG	9	35077002	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	30414525	35077002	106136429	32	25952											
TLE4	7091	broad.mit.edu	37	9	82267584	82267584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	82267584	A	G	82267584	3	3	445	1	0	0	0	0	1	0	0	0	15953	188	7	3	493	3	TLE4	9	82267584	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	47190582	82267584	58945847	33	25953											
SMC2	10592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	106862707	106862707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	106862707	T	C	106862707	3	2	445	1	0	0	0	0	1	0	0	0	14796	1764	61	3	651	3	SMC2	9	106862707	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	24595123	106862707	34350724	34	25954											
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114359672	114359672	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	114359672	T	G	114359672	3	3	445	1	0	0	0	0	1	0	0	0	12764	1792	62	5	1025	5	PTGR1	9	114359672	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	7496965	114359672	26853759	35	25955											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128064468	128064468	+	Missense_Mutation	SNP	C	C	T	rs139510593	alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	128064468	C	T	128064468	3	4	445	1	0	0	0	0	1	0	0	0	6246	478	17	2	398	2	GAPVD1	9	128064468	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	13704796	128064468	13148963	36	25956											
DNM1	1759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131010868	131010868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	131010868	G	A	131010868	3	1	445	1	0	0	0	0	1	0	0	0	4672	1059	37	1	1981	1	DNM1	9	131010868	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	2946400	131010868	10202563	37	25957											
CERCAM	51148	broad.mit.edu	37	9	131196837	131196837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	131196837	C	T	131196837	3	4	445	1	0	0	0	0	1	0	0	0	3268	768	27	1	1522	1	CERCAM	9	131196837	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	185969	131196837	10016594	38	25958											
C10orf54	64115	broad.mit.edu	37	10	73521465	73521465	+	Missense_Mutation	SNP	C	C	T	rs200235042		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	73521465	C	T	73521465	3	4	445	1	0	0	0	0	1	0	0	0	1609	768	27	1	558	1	C10orf54	10	73521465	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		73521465	62013282	39	25959											
C10orf62	414157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	99349694	99349694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	99349694	T	A	99349694	3	1	445	1	0	0	0	0	1	0	0	0	1613	1551	54	5	42	5	C10orf62	10	99349694	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	25828229	99349694	36185053	40	25960											
NPS	594857	broad.mit.edu;bcgsc.ca	37	10	129350829	129350829	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	-	129350829	T	-	129350829	7	5	445	1	0	1	0	1	0	0	0	0	10606	1725	60	0	206	0	NPS	10	129350829	Frame_Shift_Del	DEL	T	TCGA-BQ-5886-01A-11D-1589-08	30001135	129350829	6183918	41	25961											
ST5	6764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	8751785	8751785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	8751785	G	A	8751785	3	1	445	1	0	0	0	0	1	0	0	0	15232	1232	43	2	2433	2	ST5	11	8751785	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		8751785	126254731	42	25962											
ZNF143	7702	hgsc.bcm.edu;broad.mit.edu	37	11	9519236	9519236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	9519236	A	C	9519236	3	2	445	1	0	0	0	0	1	0	0	0	17744	72	3	5	890	5	ZNF143	11	9519236	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	767451	9519236	125487280	43	25963											
OR8H3	390152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55890388	55890388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	55890388	C	A	55890388	3	1	445	1	0	0	0	0	1	0	0	0	11246	477	17	4	542	4	OR8H3	11	55890388	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	46371152	55890388	79116128	44	25964											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62290316	62290316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	62290316	C	T	62290316	3	4	445	1	0	0	0	0	1	0	0	0	414	507	18	2	6219	2	AHNAK	11	62290316	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	6399928	62290316	72716200	45	25965											
TUT1	64852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62346405	62346405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	62346405	T	C	62346405	3	2	445	1	0	0	0	0	1	0	0	0	16792	1435	50	3	1856	3	TUT1	11	62346405	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	56089	62346405	72660111	46	25966											
PC	5091	broad.mit.edu	37	11	66636400	66636400	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	66636400	C	A	66636400	2	1	445	1	0	0	0	0	0	0	0	1	11504	581	21	4		4	PC	11	66636400	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	4289995	66636400	68370116	47	25967											
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120336044	120336044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	120336044	G	T	120336044	3	4	445	1	0	0	0	0	1	0	0	0	897	991	35	4	2822	4	ARHGEF12	11	120336044	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	53699644	120336044	14670472	48	25968											
ESAM	90952	hgsc.bcm.edu	37	11	124623757	124623757	+	Missense_Mutation	SNP	G	G	A	rs200154876	alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	124623757	G	A	124623757	3	1	445	1	0	0	0	0	1	0	0	0	5249	1115	39	1	218	1	ESAM	11	124623757	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	4287713	124623757	10382759	49	25969											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	12	49431830	49431830	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	49431830	A	T	49431830	2	4	445	1	0	0	0	0	0	0	0	1	9628	175	7	5		5	MLL2	12	49431830	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08		49431830	84420065	50	25970											
MCRS1	10445	hgsc.bcm.edu	37	12	49956786	49956786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	49956786	G	C	49956786	3	2	445	1	0	0	0	0	1	0	0	0	9406	1377	48	4	617	4	MCRS1	12	49956786	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	524956	49956786	83895109	51	25971											
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu	37	12	56495577	56495577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	56495577	C	T	56495577	3	4	445	1	0	0	0	0	1	0	0	0	5210	594	21	2	4008	2	ERBB3	12	56495577	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	6538791	56495577	77356318	52	25972											
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	62972277	62972277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	62972277	G	A	62972277	3	1	445	1	0	0	0	0	1	0	0	0	9707	1290	45	2	4689	2	MON2	12	62972277	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	6476700	62972277	70879618	53	25973											
NAP1L1	4673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	76444427	76444427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	76444427	C	T	76444427	3	4	445	1	0	0	0	0	1	0	0	0	10163	826	29	2	248	2	NAP1L1	12	76444427	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	13472150	76444427	57407468	54	25974											
HMGB1	3146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	31036826	31036826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	31036826	G	A	31036826	3	1	445	1	0	0	0	0	1	0	0	0	7232	942	33	2	335	2	HMGB1	13	31036826	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		31036826	84133052	55	25975	326	2									
HMGB1	3146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	31036836	31036836	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	-	31036836	G	-	31036836	7	5	445	1	0	1	0	1	0	0	0	0	7232	1000	35	0	345	0	HMGB1	13	31036836	Frame_Shift_Del	DEL	G	TCGA-BQ-5886-01A-11D-1589-08	10	31036836	84133042	56	25976	326	2									
POSTN	10631	bcgsc.ca	37	13	38154768	38154768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	38154768	T	C	38154768	3	2	445	1	0	0	0	0	1	0	0	0	12266	1464	51	3	1103	3	POSTN	13	38154768	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	7117932	38154768	77015110	57	25977											
ELF1	1997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41515309	41515309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	41515309	G	A	41515309	3	1	445	1	0	0	0	0	1	0	0	0	5055	1348	47	2	863	2	ELF1	13	41515309	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	3360541	41515309	73654569	58	25978											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67389425	67389425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	67389425	G	C	67389425	3	2	445	1	0	0	0	0	1	0	0	0	6617	1290	45	4	525	4	GPHN	14	67389425	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		67389425	39960115	59	25979											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96761860	96761860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	96761860	A	T	96761860	3	4	445	1	0	0	0	0	1	0	0	0	1094	72	3	5	1091	5	ATG2B	14	96761860	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	29372435	96761860	10587680	60	25980											
NOMO2	283820	hgsc.bcm.edu	37	16	18532277	18532277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	18532277	C	T	18532277	3	4	445	1	0	0	0	0	1	0	0	0	10539	507	18	2	1780	2	NOMO2	16	18532277	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		18532277	71822476	61	25981											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31371300	31371300	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	31371300	G	A	31371300	2	1	445	1	0	0	0	0	0	0	0	1	7896	1194	42	2		2	ITGAX	16	31371300	Silent	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	12839023	31371300	58983453	62	25982											
TK2	7084	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66547680	66547680	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	66547680	T	A	66547680	3	1	445	1	0	0	0	0	1	0	0	0	15945	1551	54	5	152	5	TK2	16	66547680	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	35176380	66547680	23807073	63	25983											
SLC13A5	284111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6606332	6606332	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	6606332	T	G	6606332	3	3	445	1	0	0	0	0	1	0	0	0	14408	1667	58	5	1065	5	SLC13A5	17	6606332	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08		6606332	74588878	64	25984											
PIK3R5	23533	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	8812455	8812455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	8812455	A	G	8812455	3	3	445	1	0	0	0	0	1	0	0	0	11929	188	7	3	2570	3	PIK3R5	17	8812455	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	2206123	8812455	72382755	65	25985											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26948415	26948415	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	26948415	A	G	26948415	5	3	445	1	0	0	0	0	0	0	1	0	8161	289	10	3	1698	3	KIAA0100	17	26948415	Splice_Site	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	18135960	26948415	54246795	66	25986											
MPO	4353	hgsc.bcm.edu	37	17	56356475	56356475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	56356475	T	C	56356475	3	2	445	1	0	0	0	0	1	0	0	0	9739	1667	58	3	1486	3	MPO	17	56356475	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	29408060	56356475	24838735	67	25987											
NACA2	342538	ucsc.edu	37	17	59668318	59668318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	59668318	C	T	59668318	3	4	445	1	0	0	0	0	1	0	0	0	10141	681	24	2	427	2	NACA2	17	59668318	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	3311843	59668318	21526892	68	25988											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73752809	73752809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	73752809	C	T	73752809	3	4	445	1	0	0	0	0	1	0	0	0	7904	623	22	2	5227	2	ITGB4	17	73752809	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	14084491	73752809	7442401	69	25989											
GADD45B	4616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2477582	2477582	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	2477582	T	A	2477582	3	1	445	1	0	0	0	0	1	0	0	0	6189	1551	54	5	480	5	GADD45B	19	2477582	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08		2477582	56651401	70	25990											
S1PR4	8698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3179456	3179456	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	3179456	C	T	3179456	2	4	445	1	0	0	0	0	0	0	0	1	13809	900	32	2		2	S1PR4	19	3179456	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	701874	3179456	55949527	71	25991											
SLC7A10	56301	hgsc.bcm.edu	37	19	33706864	33706864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	33706864	G	C	33706864	3	2	445	1	0	0	0	0	1	0	0	0	14706	1059	37	4	1444	4	SLC7A10	19	33706864	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	30527408	33706864	25422119	72	25992											
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36831480	36831481	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	AT	36831481	GC	AT	36831480	3	1	445	1	0	0	0	0	1	0	0	0	17651	1310	46	2	357	2	ZFP14	19	36831480	Missense_Mutation	DNP	GC	TCGA-BQ-5886-01A-11D-1589-08	3124616	36831480	22297503	73	25993											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	40395905	40395906	+	Missense_Mutation	DNP	TC	TC	GT	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	GT	40395906	TC	GT	40395905	3	3	445	1	0	0	0	0	1	0	0	0	5785	1783	62	5	8813	5	FCGBP	19	40395905	Missense_Mutation	DNP	TC	TCGA-BQ-5886-01A-11D-1589-08	3564425	40395905	18733078	74	25994											
BCAM	4059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45322968	45322968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	45322968	G	T	45322968	3	4	445	1	0	0	0	0	1	0	0	0	1344	1116	39	4	1798	4	BCAM	19	45322968	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	4927063	45322968	13806015	75	25995											
CCDC114	93233	broad.mit.edu	37	19	48800292	48800292	+	Missense_Mutation	SNP	T	T	G	rs190723331	alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	48800292	T	G	48800292	3	3	445	1	0	0	0	0	1	0	0	0	2753	1696	59	5	62	5	CCDC114	19	48800292	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	3477324	48800292	10328691	76	25996											
HRC	3270	hgsc.bcm.edu	37	19	49657763	49657763	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	49657763	T	A	49657763	3	1	445	1	0	0	0	0	1	0	0	0	7359	1606	56	5	1391	5	HRC	19	49657763	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	857471	49657763	9471220	77	25997											
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57839185	57839185	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	-	57839185	G	-	57839185	7	5	445	1	0	1	0	1	0	0	0	0	17988	1000	35	0	369	0	ZNF543	19	57839185	Frame_Shift_Del	DEL	G	TCGA-BQ-5886-01A-11D-1589-08	8181422	57839185	1289798	78	25998											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3016279	3016279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	3016279	G	T	3016279	3	4	445	1	0	0	0	0	1	0	0	0	12808	942	33	4	2039	4	PTPRA	20	3016279	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		3016279	60009241	79	25999											
GFRA4	64096	hgsc.bcm.edu	37	20	3641542	3641542	+	Silent	SNP	G	G	A	rs58634535		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	3641542	G	A	3641542	2	1	445	1	0	0	0	0	0	0	0	1	6357	929	33	2		2	GFRA4	20	3641542	Silent	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	625263	3641542	59383978	80	26000											
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49366607	49366607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	49366607	T	C	49366607	3	2	445	1	0	0	0	0	1	0	0	0	11453	1464	51	3	711	3	PARD6B	20	49366607	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	45725065	49366607	13658913	81	26001											
KRTAP10-11	386678	broad.mit.edu	37	21	46067216	46067216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	46067216	G	A	46067216	3	1	445	1	0	0	0	0	1	0	0	0	8514	1087	38	1	843	1	KRTAP10-11	21	46067216	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		46067216	2062679	82	26002											
EMID1	129080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29627008	29627008	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	29627008	G	T	29627008	5	4	445	1	0	0	0	0	0	0	1	0	5093	956	33	4	487	4	EMID1	22	29627008	Splice_Site	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		29627008	21677558	83	26003											
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50885659	50885659	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	C	50885659	G	C	50885659	3	2	445	1	0	0	0	0	1	0	0	0	13871	1145	40	4	91	4	SBF1	22	50885659	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	21258651	50885659	418907	84	26004											
EIF2S3	1968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	24089815	24089815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	T	24089815	C	T	24089815	3	4	445	1	0	0	0	0	1	0	0	0	5013	536	19	1	1191	1	EIF2S3	23	24089815	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		24089815	131180745	85	26005											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44949021	44949021	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	44949021	G	A	44949021	4	1	445	1	0	0	0	0	0	1	0	0	8144	1212	42	2	3680	2	KDM6A	23	44949021	Nonsense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	20859206	44949021	110321539	86	26006											
ELF4	2000	hgsc.bcm.edu	37	X	129201251	129201251	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	G	129201251	A	G	129201251	2	3	445	1	0	0	0	0	0	0	0	1	5058	291	11	3		3	ELF4	23	129201251	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	84252230	129201251	26069309	87	26007											
IL9R	3581	hgsc.bcm.edu	37	X	155239602	155239602	+	Missense_Mutation	SNP	G	G	A	rs2228650	bycluster;bysubmitter	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	A	155239602	G	A	155239602	3	1	445	1	0	0	0	0	1	0	0	0	7715	1145	40	1	1128	1	IL9R	23	155239602	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	26038351	155239602	30958	88	26008											
PTPRF	5792	hgsc.bcm.edu	37	1	44084813	44084813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	C	44084813	T	C	44084813	3	2	446	1	0	0	0	0	1	0	0	0	12814	1783	62	3	4684	3	PTPRF	1	44084813	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		44084813	205165808	1	26009											
OR2G2	81470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247751788	247751788	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	C	247751788	T	C	247751788	2	2	446	1	0	0	0	0	0	0	0	1	11005	1838	64	3		3	OR2G2	1	247751788	Silent	SNP	T	TCGA-BQ-5887-01A-11D-1961-08	203666975	247751788	1498833	2	26010											
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62115531	62115531	+	Missense_Mutation	SNP	T	T	C	rs199542002		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	C	62115531	T	C	62115531	3	2	446	1	0	0	0	0	1	0	0	0	2957	1464	51	3	1563	3	CCT4	2	62115531	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		62115531	181083842	3	26011											
ZSWIM2	151112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	187693177	187693177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	A	187693177	T	A	187693177	3	1	446	1	0	0	0	0	1	0	0	0	18253	1493	52	5	469	5	ZSWIM2	2	187693177	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08	125577646	187693177	55506196	4	26012											
PRRT3	285368	hgsc.bcm.edu	37	3	9989480	9989480	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	C	9989480	G	C	9989480	2	2	446	1	0	0	0	0	0	0	0	1	12621	958	34	4		4	PRRT3	3	9989480	Silent	SNP	G	TCGA-BQ-5887-01A-11D-1961-08		9989480	188032950	5	26013											
CHST2	9435	hgsc.bcm.edu	37	3	142839977	142839977	+	Missense_Mutation	SNP	G	G	A	rs185111962		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	A	142839977	G	A	142839977	3	1	446	1	0	0	0	0	1	0	0	0	3406	1000	35	2	321	2	CHST2	3	142839977	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08	132850497	142839977	55182453	6	26014											
SULT1E1	6783	broad.mit.edu	37	4	70713465	70713465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	C	70713465	T	C	70713465	3	2	446	1	0	0	0	0	1	0	0	0	15392	1609	56	3	354	3	SULT1E1	4	70713465	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		70713465	120440811	7	26015											
RCHY1	25898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76439476	76439476	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	C	76439476	T	C	76439476	2	2	446	1	0	0	0	0	0	0	0	1	13190	1606	56	3		3	RCHY1	4	76439476	Silent	SNP	T	TCGA-BQ-5887-01A-11D-1961-08	5726011	76439476	114714800	8	26016											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90052799	90052799	+	Missense_Mutation	SNP	G	G	A	rs200576500		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	A	90052799	G	A	90052799	3	1	446	1	0	0	0	0	1	0	0	0	6728	1087	38	1	11987	1	GPR98	5	90052799	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08		90052799	90862461	9	26017											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137766032	137766032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	G	137766032	A	G	137766032	3	3	446	1	0	0	0	0	1	0	0	0	8134	449	16	3	5074	3	KDM3B	5	137766032	Missense_Mutation	SNP	A	TCGA-BQ-5887-01A-11D-1961-08	47713233	137766032	43149228	10	26018											
C6orf211	79624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151789725	151789725	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	G	151789725	T	G	151789725	3	3	446	1	0	0	0	0	1	0	0	0	2356	1821	63	5	824	5	C6orf211	6	151789725	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		151789725	19325342	11	26019											
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	7412962	7412963	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	AT	7412963	CC	AT	7412962	3	1	446	1	0	0	0	0	1	0	0	0	3688	855	30	4	818	4	COL28A1	7	7412962	Missense_Mutation	DNP	CC	TCGA-BQ-5887-01A-11D-1961-08		7412962	151725701	12	26020											
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4736579	4736579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	C	4736579	G	C	4736579	3	2	446	1	0	0	0	0	1	0	0	0	452	1232	43	4	1080	4	AKAP3	12	4736579	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08		4736579	129115316	13	26021											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46244916	46244916	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	T	46244916	A	T	46244916	3	4	446	1	0	0	0	0	1	0	0	0	915	188	7	5	3068	5	ARID2	12	46244916	Missense_Mutation	SNP	A	TCGA-BQ-5887-01A-11D-1961-08	41508337	46244916	87606979	14	26022											
COL4A1	1282	ucsc.edu	37	13	110827563	110827563	+	Splice_Site	SNP	A	A	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	C	110827563	A	C	110827563	5	2	446	1	0	0	0	0	0	0	1	0	3691	405	14	5	1873	5	COL4A1	13	110827563	Splice_Site	SNP	A	TCGA-BQ-5887-01A-11D-1961-08		110827563	4342315	15	26023											
HERC2	8924	broad.mit.edu	37	15	28370205	28370205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	G	28370205	T	G	28370205	3	3	446	1	0	0	0	0	1	0	0	0	7065	1638	57	5	1607	5	HERC2	15	28370205	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		28370205	74161187	16	26024											
RYR3	6263	broad.mit.edu	37	15	33954438	33954438	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	T	33954438	C	T	33954438	2	4	446	1	0	0	0	0	0	0	0	1	13783	776	27	1		1	RYR3	15	33954438	Silent	SNP	C	TCGA-BQ-5887-01A-11D-1961-08	5584233	33954438	68576954	17	26025											
HERPUD1	9709	broad.mit.edu	37	16	56974154	56974154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	G	56974154	A	G	56974154	3	3	446	1	0	0	0	0	1	0	0	0	7070	391	14	3	924	3	HERPUD1	16	56974154	Missense_Mutation	SNP	A	TCGA-BQ-5887-01A-11D-1961-08		56974154	33380599	18	26026											
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18149935	18149935	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	A	18149935	G	A	18149935	2	1	446	1	0	0	0	0	0	0	0	1	5932	1049	37	1		1	FLII	17	18149935	Silent	SNP	G	TCGA-BQ-5887-01A-11D-1961-08		18149935	63045275	19	26027											
FDXR	2232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72860612	72860612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	C	72860612	G	C	72860612	3	2	446	1	0	0	0	0	1	0	0	0	5814	1368	48	4	703	4	FDXR	17	72860612	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08	54710677	72860612	8334598	20	26028											
RNMT	8731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	13731629	13731630	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	T	13731630	-	T	13731629	7	5	446	1	0	1	1	0	0	0	0	0	13519	797	28	0	115	0	RNMT	18	13731629	Frame_Shift_Ins	INS	-	TCGA-BQ-5887-01A-11D-1961-08		13731629	64345619	21	26029											
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	G	8527467	T	G	8527467	5	3	446	1	0	0	0	0	0	0	1	0	7278	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		8527467	50601516	22	26030											
NANOS3	342977	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	13988494	13988494	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	G	13988494	A	G	13988494	2	3	446	1	0	0	0	0	0	0	0	1	10160	233	9	3		3	NANOS3	19	13988494	Silent	SNP	A	TCGA-BQ-5887-01A-11D-1961-08	5461027	13988494	45140489	23	26031											
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55452315	55452315	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	T	55452315	C	T	55452315	2	4	446	1	0	0	0	0	0	0	0	1	10489	639	23	1		1	NLRP7	19	55452315	Silent	SNP	C	TCGA-BQ-5887-01A-11D-1961-08	41463821	55452315	3676668	24	26032											
TMC2	117532	broad.mit.edu;bcgsc.ca	37	20	2621849	2621849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	G	2621849	A	G	2621849	3	3	446	1	0	0	0	0	1	0	0	0	15997	101	4	3	2651	3	TMC2	20	2621849	Missense_Mutation	SNP	A	TCGA-BQ-5887-01A-11D-1961-08		2621849	60403671	25	26033											
CHD6	84181	broad.mit.edu	37	20	40033696	40033696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	A	40033696	G	A	40033696	3	1	446	1	0	0	0	0	1	0	0	0	3331	1145	40	1	466	1	CHD6	20	40033696	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08	37411847	40033696	22991824	26	26034											
INPP5J	27124	hgsc.bcm.edu;broad.mit.edu	37	22	31529986	31529986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	T	31529986	C	T	31529986	3	4	446	1	0	0	0	0	1	0	0	0	7766	797	28	2	1548	2	INPP5J	22	31529986	Missense_Mutation	SNP	C	TCGA-BQ-5887-01A-11D-1961-08		31529986	19774580	27	26035											
ALAS2	212	hgsc.bcm.edu	37	X	55046923	55046923	+	Missense_Mutation	SNP	C	C	T	rs185504937		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	T	55046923	C	T	55046923	3	4	446	1	0	0	0	0	1	0	0	0	485	536	19	1	1134	1	ALAS2	23	55046923	Missense_Mutation	SNP	C	TCGA-BQ-5887-01A-11D-1961-08		55046923	100223637	28	26036											
HSPG2	3339	hgsc.bcm.edu	37	1	22190695	22190695	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	22190695	G	A	22190695	2	1	447	1	0	0	0	0	0	0	0	1	7437	1103	39	1		1	HSPG2	1	22190695	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		22190695	227059926	1	26037											
KHDRBS1	10657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32508212	32508212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	G	32508212	A	G	32508212	3	3	447	1	0	0	0	0	1	0	0	0	8153	449	16	3	1353	3	KHDRBS1	1	32508212	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	10317517	32508212	216742409	2	26038											
TTLL7	79739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	84348653	84348653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	C	84348653	T	C	84348653	3	2	447	1	0	0	0	0	1	0	0	0	16744	1754	61	3	135	3	TTLL7	1	84348653	Missense_Mutation	SNP	T	TCGA-BQ-5888-01A-11D-1589-08	51840441	84348653	164901968	3	26039											
HSD17B7	51478	broad.mit.edu	37	1	162769622	162769622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	162769622	C	A	162769622	3	1	447	1	0	0	0	0	1	0	0	0	7395	825	29	4	555	4	HSD17B7	1	162769622	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	78420969	162769622	86480999	4	26040											
CFH	3075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196706023	196706023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	196706023	A	T	196706023	3	4	447	1	0	0	0	0	1	0	0	0	3285	101	4	5	2563	5	CFH	1	196706023	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	33936401	196706023	52544598	5	26041											
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204379183	204379183	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	204379183	C	A	204379183	4	1	447	1	0	0	0	0	0	1	0	0	12374	835	29	4	792	4	PPP1R15B	1	204379183	Nonsense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	7673160	204379183	44871438	6	26042											
BATF3	55509	hgsc.bcm.edu	37	1	212873074	212873074	+	Missense_Mutation	SNP	C	C	T	rs2202683		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	212873074	C	T	212873074	3	4	447	1	0	0	0	0	1	0	0	0	1327	536	19	1	364	1	BATF3	1	212873074	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	8493891	212873074	36377547	7	26043											
DIS3L2	129563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	233075106	233075106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	G	233075106	C	G	233075106	3	3	447	1	0	0	0	0	1	0	0	0	4539	565	20	4	1229	4	DIS3L2	2	233075106	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		233075106	10124267	8	26044											
AMIGO3	386724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49755505	49755505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	C	49755505	T	C	49755505	3	2	447	1	0	0	0	0	1	0	0	0	577	1493	52	3	124	3	AMIGO3	3	49755505	Missense_Mutation	SNP	T	TCGA-BQ-5888-01A-11D-1589-08		49755505	148266925	9	26045											
OTOL1	131149	hgsc.bcm.edu	37	3	161221062	161221062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	G	161221062	A	G	161221062	3	3	447	1	0	0	0	0	1	0	0	0	11311	247	9	3	780	3	OTOL1	3	161221062	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	111465557	161221062	36801368	10	26046											
OTOP1	133060	hgsc.bcm.edu	37	4	4228410	4228410	+	Missense_Mutation	SNP	A	A	G	rs201691469		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	G	4228410	A	G	4228410	3	3	447	1	0	0	0	0	1	0	0	0	11312	188	7	3	1680	3	OTOP1	4	4228410	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08		4228410	186925866	11	26047											
CDH10	1008	broad.mit.edu	37	5	24492973	24492973	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	-	24492973	A	-	24492973	7	5	447	1	0	1	0	1	0	0	0	0	3098	246	9	0	801	0	CDH10	5	24492973	Frame_Shift_Del	DEL	A	TCGA-BQ-5888-01A-11D-1589-08		24492973	156422287	12	26048											
EBF1	1879	bcgsc.ca	37	5	158158101	158158101	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	G	158158101	A	G	158158101	2	3	447	1	0	0	0	0	0	0	0	1	4882	175	7	3		3	EBF1	5	158158101	Silent	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	133665128	158158101	22757159	13	26049											
ABCC10	89845	broad.mit.edu	37	6	43412937	43412937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	43412937	C	T	43412937	3	4	447	1	0	0	0	0	1	0	0	0	50	768	27	1	2877	1	ABCC10	6	43412937	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		43412937	127702130	14	26050											
WASF1	8936	hgsc.bcm.edu	37	6	110424747	110424747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	110424747	C	A	110424747	3	1	447	1	0	0	0	0	1	0	0	0	17264	536	19	4	964	4	WASF1	6	110424747	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	67011810	110424747	60690320	15	26051											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121681010	121681010	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	121681010	G	A	121681010	2	1	447	1	0	0	0	0	0	0	0	1	12827	1335	47	2		2	PTPRZ1	7	121681010	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		121681010	37457653	16	26052											
MTBP	27085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	121518998	121518998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	121518998	C	T	121518998	3	4	447	1	0	0	0	0	1	0	0	0	9919	855	30	2	1842	2	MTBP	8	121518998	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		121518998	24845024	17	26053											
SLC35D2	11046	hgsc.bcm.edu	37	9	99122448	99122448	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	C	99122448	G	C	99122448	3	2	447	1	0	0	0	0	1	0	0	0	14595	1377	48	4	714	4	SLC35D2	9	99122448	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		99122448	42090983	18	26054											
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12811756	12811756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	12811756	G	A	12811756	3	1	447	1	0	0	0	0	1	0	0	0	2599	1001	35	2	541	2	CAMK1D	10	12811756	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		12811756	122722991	19	26055											
MUC5B	727897	hgsc.bcm.edu;ucsc.edu	37	11	1253260	1253260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	1253260	C	A	1253260	3	1	447	1	0	0	0	0	1	0	0	0	9986	535	19	4	1780	4	MUC5B	11	1253260	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		1253260	133753256	20	26056											
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56000140	56000140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	56000140	G	T	56000140	3	4	447	1	0	0	0	0	1	0	0	0	11189	1310	46	4	556	4	OR5T2	11	56000140	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	54746880	56000140	79006376	21	26057											
SLCO1B3	28234	broad.mit.edu	37	12	21030825	21030825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	C	21030825	G	C	21030825	3	2	447	1	0	0	0	0	1	0	0	0	14737	1175	41	4	1120	4	SLCO1B3	12	21030825	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		21030825	112821070	22	26058											
CELA1	1990	hgsc.bcm.edu	37	12	51740415	51740415	+	Missense_Mutation	SNP	A	A	C	rs55827519	alternate_allele	TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	C	51740415	A	C	51740415	3	2	447	1	0	0	0	0	1	0	0	0	3212	275	10	5	800	5	CELA1	12	51740415	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	30709590	51740415	82111480	23	26059											
TPCN1	53373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113704162	113704162	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	113704162	G	T	113704162	5	4	447	1	0	0	0	0	0	0	1	0	16407	1391	48	4	645	4	TPCN1	12	113704162	Splice_Site	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	61963747	113704162	20147733	24	26060											
HERC1	8925	hgsc.bcm.edu	37	15	63929810	63929810	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	C	63929810	G	C	63929810	3	2	447	1	0	0	0	0	1	0	0	0	7064	1164	41	4	2519	4	HERC1	15	63929810	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		63929810	38601582	25	26061											
SNX1	6642	hgsc.bcm.edu	37	15	64426982	64426982	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	64426982	G	A	64426982	2	1	447	1	0	0	0	0	0	0	0	1	14893	962	34	2		2	SNX1	15	64426982	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	497172	64426982	38104410	26	26062											
METTL9	51108	hgsc.bcm.edu	37	16	21611192	21611192	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	G	21611192	C	G	21611192	2	3	447	1	0	0	0	0	0	0	0	1	9515	639	23	4		4	METTL9	16	21611192	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		21611192	68743561	27	26063											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89345492	89345492	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	89345492	G	A	89345492	2	1	447	1	0	0	0	0	0	0	0	1	639	1161	41	2		2	ANKRD11	16	89345492	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	67734300	89345492	1009261	28	26064											
SLFN11	91607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33679780	33679780	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	33679780	G	A	33679780	2	1	447	1	0	0	0	0	0	0	0	1	14746	1103	39	1		1	SLFN11	17	33679780	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		33679780	47515430	29	26065											
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39191011	39191011	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	C	39191011	G	C	39191011	2	2	447	1	0	0	0	0	0	0	0	1	8510	958	34	4		4	KRTAP1-3	17	39191011	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	5511231	39191011	42004199	30	26066											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8379245	8379245	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	8379245	G	A	8379245	2	1	447	1	0	0	0	0	0	0	0	1	12819	1248	44	2		2	PTPRM	18	8379245	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		8379245	69698003	31	26067											
PRTN3	5657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	841048	841048	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	841048	C	T	841048	2	4	447	1	0	0	0	0	0	0	0	1	12649	796	28	2		2	PRTN3	19	841048	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		841048	58287935	32	26068											
NDUFA11	126328	ucsc.edu	37	19	5897010	5897010	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	5897010	T	A	5897010	5	1	447	1	0	0	0	0	0	0	1	0	10268	1594	55	5	341	5	NDUFA11	19	5897010	Splice_Site	SNP	T	TCGA-BQ-5888-01A-11D-1589-08	5055962	5897010	53231973	33	26069											
HNRNPL	3191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39336576	39336576	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	C	39336576	G	C	39336576	3	2	447	1	0	0	0	0	1	0	0	0	7277	1116	39	4	1272	4	HNRNPL	19	39336576	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	33439566	39336576	19792407	34	26070											
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49703680	49703680	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	49703680	G	T	49703680	2	4	447	1	0	0	0	0	0	0	0	1	16600	1277	45	4		4	TRPM4	19	49703680	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	10367104	49703680	9425303	35	26071											
LILRA6	79168	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	54745734	54745734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	54745734	G	T	54745734	3	4	447	1	0	0	0	0	1	0	0	0	8796	1000	35	4	1089	4	LILRA6	19	54745734	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	5042054	54745734	4383249	36	26072											
ZNF446	55663	hgsc.bcm.edu	37	19	58991385	58991385	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	58991385	G	A	58991385	2	1	447	1	0	0	0	0	0	0	0	1	17931	1130	39	1		1	ZNF446	19	58991385	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	4245651	58991385	137598	37	26073											
CHRNA4	1137	hgsc.bcm.edu	37	20	61981411	61981411	+	Missense_Mutation	SNP	G	G	A	rs55915440		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	A	61981411	G	A	61981411	3	1	447	1	0	0	0	0	1	0	0	0	3387	1116	39	1	539	1	CHRNA4	20	61981411	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		61981411	1044109	38	26074											
PRDM15	63977	hgsc.bcm.edu	37	21	43298959	43298959	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	G	43298959	C	G	43298959	2	3	447	1	0	0	0	0	0	0	0	1	12466	755	27	4		4	PRDM15	21	43298959	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		43298959	4830936	39	26075											
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45978127	45978127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	45978127	C	T	45978127	3	4	447	1	0	0	0	0	1	0	0	0	8517	536	19	1	197	1	KRTAP10-3	21	45978127	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	2679168	45978127	2151768	40	26076											
GTSE1	51512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46724721	46724721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	C	46724721	A	C	46724721	3	2	447	1	0	0	0	0	1	0	0	0	6892	131	5	5	1895	5	GTSE1	22	46724721	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08		46724721	4579845	41	26077											
SHROOM4	57477	hgsc.bcm.edu	37	X	50350698	50350698	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	50350698	C	T	50350698	2	4	447	1	0	0	0	0	0	0	0	1	14309	680	24	2		2	SHROOM4	23	50350698	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		50350698	104919862	42	26078											
IRS4	8471	broad.mit.edu	37	X	107978243	107978243	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	T	107978243	C	T	107978243	2	4	447	1	0	0	0	0	0	0	0	1	7849	726	26	2		2	IRS4	23	107978243	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	57627545	107978243	47292317	43	26079											
MIIP	60672	hgsc.bcm.edu	37	1	12089880	12089880	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	12089880	C	T	12089880	2	4	448	1	0	0	0	0	0	0	0	1	9592	610	22	2		2	MIIP	1	12089880	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08		12089880	237160741	1	26080											
PHACTR4	65979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	28800653	28800653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	28800653	A	T	28800653	3	4	448	1	0	0	0	0	1	0	0	0	11819	101	4	5	1483	5	PHACTR4	1	28800653	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	16710773	28800653	220449968	2	26081											
FAM151A	338094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	55077293	55077293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	55077293	A	C	55077293	3	2	448	1	0	0	0	0	1	0	0	0	5462	246	9	5	843	5	FAM151A	1	55077293	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	26276640	55077293	194173328	3	26082											
SSX2IP	117178	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85121610	85121610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	85121610	G	A	85121610	3	1	448	1	0	0	0	0	1	0	0	0	15216	942	33	2	566	2	SSX2IP	1	85121610	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	30044317	85121610	164129011	4	26083											
TXNIP	10628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145439917	145439917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	145439917	G	A	145439917	3	1	448	1	0	0	0	0	1	0	0	0	16815	1290	45	2	473	2	TXNIP	1	145439917	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	60318307	145439917	103810704	5	26084											
INSRR	3645	broad.mit.edu	37	1	156816378	156816378	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	-	156816378	G	-	156816378	7	5	448	1	0	1	0	1	0	0	0	0	7781	1335	47	0	2209	0	INSRR	1	156816378	Frame_Shift_Del	DEL	G	TCGA-BQ-5889-01A-11D-1589-08	11376461	156816378	92434243	6	26085											
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158912063	158912063	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	158912063	T	G	158912063	2	3	448	1	0	0	0	0	0	0	0	1	12878	1567	55	5		5	PYHIN1	1	158912063	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	2095685	158912063	90338558	7	26086											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	201017795	201017795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	201017795	G	T	201017795	3	4	448	1	0	0	0	0	1	0	0	0	2549	1368	48	4	1301	4	CACNA1S	1	201017795	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	42105732	201017795	48232826	8	26087											
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	228491399	228491399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	228491399	G	A	228491399	3	1	448	1	0	0	0	0	1	0	0	0	10819	957	33	2		2	OBSCN	1	228491399	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	27473604	228491399	20759222	9	26088											
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	238053765	238053765	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	238053765	A	T	238053765	2	4	448	1	0	0	0	0	0	0	0	1	18230	59	3	5		5	ZP4	1	238053765	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	9562366	238053765	11196856	10	26089											
OR2L8	391190	hgsc.bcm.edu	37	1	248112762	248112763	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	-	248112763	TG	-	248112762	7	5	448	1	0	1	0	1	0	0	0	0	11016	1693	59	0	605	0	OR2L8	1	248112762	Frame_Shift_Del	DEL	TG	TCGA-BQ-5889-01A-11D-1589-08	10058997	248112762	1137859	11	26090											
OR2T12	127064	broad.mit.edu	37	1	248458256	248458256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	248458256	A	G	248458256	3	3	448	1	0	0	0	0	1	0	0	0	11026	72	3	3	340	3	OR2T12	1	248458256	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	345494	248458256	792365	12	26091											
OR2T12	127064	hgsc.bcm.edu	37	1	248458380	248458380	+	Silent	SNP	G	G	A	rs144239623		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	248458380	G	A	248458380	2	1	448	1	0	0	0	0	0	0	0	1	11026	1079	38	1		1	OR2T12	1	248458380	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	124	248458380	792241	13	26092											
CRIM1	51232	hgsc.bcm.edu;bcgsc.ca	37	2	36583678	36583678	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	36583678	C	G	36583678	4	3	448	1	0	0	0	0	0	1	0	0	3875	547	19	4	245	4	CRIM1	2	36583678	Nonsense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08		36583678	206615695	14	26093											
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	45647009	45647009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	45647009	T	C	45647009	3	2	448	1	0	0	0	0	1	0	0	0	15145	1821	63	3	933	3	SRBD1	2	45647009	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	9063331	45647009	197552364	15	26094											
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99978207	99978207	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	99978207	A	T	99978207	2	4	448	1	0	0	0	0	0	0	0	1	5046	349	13	5		5	EIF5B	2	99978207	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	54331198	99978207	143221166	16	26095											
SLC20A1	6574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113404533	113404533	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	113404533	A	T	113404533	3	4	448	1	0	0	0	0	1	0	0	0	14451	333	12	5	130	5	SLC20A1	2	113404533	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	13426326	113404533	129794840	17	26096											
SLC20A1	6574	hgsc.bcm.edu;broad.mit.edu	37	2	113404573	113404573	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	113404573	A	G	113404573	2	3	448	1	0	0	0	0	0	0	0	1	14451	407	15	3		3	SLC20A1	2	113404573	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	40	113404573	129794800	18	26097											
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128050232	128050232	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	128050232	T	A	128050232	3	1	448	1	0	0	0	0	1	0	0	0	5216	1609	56	5	1975	5	ERCC3	2	128050232	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	14645659	128050232	115149141	19	26098											
UGT1A1	54658	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	234669022	234669022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	234669022	T	C	234669022	3	2	448	1	0	0	0	0	1	0	0	0	16956	1406	49	3	91	3	UGT1A1	2	234669022	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	106618790	234669022	8530351	20	26099											
IL5RA	3568	hgsc.bcm.edu;broad.mit.edu	37	3	3143448	3143448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	3143448	G	A	3143448	3	1	448	1	0	0	0	0	1	0	0	0	7707	1086	38	1	1025	1	IL5RA	3	3143448	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08		3143448	194878982	21	26100											
FILIP1L	11259	broad.mit.edu	37	3	99648841	99648841	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	99648841	A	G	99648841	2	3	448	1	0	0	0	0	0	0	0	1	5902	175	7	3		3	FILIP1L	3	99648841	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	96505393	99648841	98373589	22	26101											
PLCXD2	257068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111432757	111432757	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	111432757	C	T	111432757	2	4	448	1	0	0	0	0	0	0	0	1	12049	668	24	2		2	PLCXD2	3	111432757	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	11783916	111432757	86589673	23	26102											
LYAR	55646	broad.mit.edu;bcgsc.ca	37	4	4276371	4276375	+	Frame_Shift_Del	DEL	CTTCA	CTTCA	-	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	CTTCA	CTTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	-	4276375	CTTCA	-	4276371	7	5	448	1	0	1	0	1	0	0	0	0	9110	912	32	0	600	0	LYAR	4	4276371	Frame_Shift_Del	DEL	CTTCA	TCGA-BQ-5889-01A-11D-1589-08		4276371	186877905	24	26103											
DRD5	1816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	9784079	9784079	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	9784079	C	G	9784079	3	3	448	1	0	0	0	0	1	0	0	0	4762	903	32	4	428	4	DRD5	4	9784079	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	5507708	9784079	181370197	25	26104											
OTUD4	54726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	146076795	146076795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	146076795	C	A	146076795	3	1	448	1	0	0	0	0	1	0	0	0	11321	913	32	4	2662	4	OTUD4	4	146076795	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	136292716	146076795	45077481	26	26105											
CCT5	22948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10261751	10261751	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	10261751	T	G	10261751	3	3	448	1	0	0	0	0	1	0	0	0	2958	1609	56	5	1103	5	CCT5	5	10261751	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		10261751	170653509	27	26106											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu	37	5	90052965	90052965	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	90052965	T	A	90052965	3	1	448	1	0	0	0	0	1	0	0	0	6728	1841	64	5	12153	5	GPR98	5	90052965	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	79791214	90052965	90862295	28	26107											
KIF20A	10112	bcgsc.ca	37	5	137518908	137518908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	137518908	G	T	137518908	3	4	448	1	0	0	0	0	1	0	0	0	8293	1203	42	4	909	4	KIF20A	5	137518908	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	47465943	137518908	43396352	29	26108											
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141033934	141033934	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	141033934	T	C	141033934	2	2	448	1	0	0	0	0	0	0	0	1	840	1567	55	3		3	ARAP3	5	141033934	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	3515026	141033934	39881326	30	26109											
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147781650	147781650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	147781650	A	G	147781650	3	3	448	1	0	0	0	0	1	0	0	0	5753	217	8	3	378	3	FBXO38	5	147781650	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	6747716	147781650	33133610	31	26110											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117241541	117241541	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	117241541	T	C	117241541	2	2	448	1	0	0	0	0	0	0	0	1	13280	1490	52	3		3	RFX6	6	117241541	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		117241541	53873526	32	26111											
MAD1L1	8379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1855740	1855740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	1855740	G	A	1855740	3	1	448	1	0	0	0	0	1	0	0	0	9154	1261	44	2	37	2	MAD1L1	7	1855740	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08		1855740	157282923	33	26112											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	42004728	42004728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	42004728	G	T	42004728	3	4	448	1	0	0	0	0	1	0	0	0	6446	1357	47	4	803	4	GLI3	7	42004728	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	40148988	42004728	117133935	34	26113											
CALCR	799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	93055856	93055856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	93055856	A	G	93055856	3	3	448	1	0	0	0	0	1	0	0	0	2581	159	6	3	191	3	CALCR	7	93055856	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	51051128	93055856	66082807	35	26114											
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142562311	142562311	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	142562311	G	T	142562311	2	4	448	1	0	0	0	0	0	0	0	1	5180	1219	43	4		4	EPHB6	7	142562311	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	49506455	142562311	16576352	36	26115											
FBXO16	157574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28321296	28321296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	28321296	T	G	28321296	3	3	448	1	0	0	0	0	1	0	0	0	5736	1696	59	5	727	5	FBXO16	8	28321296	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		28321296	118042726	37	26116											
PDP1	54704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	94935503	94935503	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	94935503	T	A	94935503	3	1	448	1	0	0	0	0	1	0	0	0	11692	1490	52	5	1399	5	PDP1	8	94935503	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	66614207	94935503	51428519	38	26117											
NFIB	4781	hgsc.bcm.edu;broad.mit.edu	37	9	14307404	14307404	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	14307404	A	T	14307404	3	4	448	1	0	0	0	0	1	0	0	0	10378	217	8	5	1148	5	NFIB	9	14307404	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08		14307404	126906027	39	26118											
SNX30	401548	broad.mit.edu	37	9	115567070	115567071	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	115567071	-	A	115567070	7	5	448	1	0	1	1	0	0	0	0	0	14913	581	21	0	177	0	SNX30	9	115567070	Frame_Shift_Ins	INS	-	TCGA-BQ-5889-01A-11D-1589-08	101259666	115567070	25646361	40	26119											
GAPVD1	26130	broad.mit.edu;bcgsc.ca	37	9	128117986	128117986	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	128117986	T	A	128117986	3	1	448	1	0	0	0	0	1	0	0	0	6246	1609	56	5	3992	5	GAPVD1	9	128117986	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	12550916	128117986	13095445	41	26120											
RPL7A	6130	ucsc.edu	37	9	136216909	136216909	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	136216909	T	A	136216909	5	1	448	1	0	0	0	0	0	0	1	0	13613	1710	59	5	431	5	RPL7A	9	136216909	Splice_Site	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	8098923	136216909	4996522	42	26121											
STAM	8027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	17735224	17735225	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	AA	17735225	GC	AA	17735224	3	1	448	1	0	0	0	0	1	0	0	0	15260	1319	46	2	470	2	STAM	10	17735224	Missense_Mutation	DNP	GC	TCGA-BQ-5889-01A-11D-1589-08		17735224	117799523	43	26122											
BMS1	9790	hgsc.bcm.edu	37	10	43312105	43312105	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	43312105	A	G	43312105	2	3	448	1	0	0	0	0	0	0	0	1	1472	175	7	3		3	BMS1	10	43312105	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	25576881	43312105	92222642	44	26123											
AGAP7	653268	hgsc.bcm.edu;broad.mit.edu	37	10	51465326	51465326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	51465326	T	G	51465326	3	3	448	1	0	0	0	0	1	0	0	0	373	1609	56	5	865	5	AGAP7	10	51465326	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	8153221	51465326	84069421	45	26124											
KIAA1279	26128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70775391	70775391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	70775391	C	T	70775391	3	4	448	1	0	0	0	0	1	0	0	0	8228	797	28	2	1111	2	KIAA1279	10	70775391	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	19310065	70775391	64759356	46	26125											
ZCCHC24	219654	ucsc.edu	37	10	81146146	81146146	+	Silent	SNP	G	G	A	rs145739202		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	81146146	G	A	81146146	2	1	448	1	0	0	0	0	0	0	0	1	17600	1079	38	1		1	ZCCHC24	10	81146146	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	10370755	81146146	54388601	47	26126											
MUC2	4583	hgsc.bcm.edu	37	11	1092643	1092643	+	Missense_Mutation	SNP	A	A	C	rs149562922		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	1092643	A	C	1092643	3	2	448	1	0	0	0	0	1	0	0	0	9982	43	2	5	4580	5	MUC2	11	1092643	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08		1092643	133913873	48	26127			1	51		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	11	1092795	1092795	+	Silent	SNP	T	T	A	rs12786761		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	1092795	T	A	1092795	2	1	448	1	0	0	0	0	0	0	0	1	9982	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	152	1092795	133913721	49	26128			1	51		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	11	1092813	1092813	+	Silent	SNP	C	C	T	rs12577898		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	1092813	C	T	1092813	2	4	448	1	0	0	0	0	0	0	0	1	9982	581	21	2		2	MUC2	11	1092813	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	18	1092813	133913703	50	26129			1	51		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	11	1093091	1093091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	1093091	C	T	1093091	3	4	448	1	0	0	0	0	1	0	0	0	9982	536	19	1	5028	1	MUC2	11	1093091	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	278	1093091	133913425	51	26130			1	51		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	11	1093116	1093116	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	1093116	C	T	1093116	2	4	448	1	0	0	0	0	0	0	0	1	9982	639	23	1		1	MUC2	11	1093116	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	25	1093116	133913400	52	26131			1	51		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	11	1093135	1093135	+	Missense_Mutation	SNP	A	A	C	rs56080332		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	1093135	A	C	1093135	3	2	448	1	0	0	0	0	1	0	0	0	9982	159	6	5	5072	5	MUC2	11	1093135	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	19	1093135	133913381	53	26132			1	51		6	6	493	N	T_C_A	4.364394e-17
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu	37	11	48152110	48152110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	48152110	T	C	48152110	3	2	448	1	0	0	0	0	1	0	0	0	12817	1435	50	3	1487	3	PTPRJ	11	48152110	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	47058975	48152110	86854406	54	26133											
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	65480307	65480307	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	65480307	T	A	65480307	5	1	448	1	0	0	0	0	0	0	1	0	7990	1710	59	5	255	5	KAT5	11	65480307	Splice_Site	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	17328197	65480307	69526209	55	26134											
NDUFV1	4723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67379406	67379406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	67379406	C	A	67379406	3	1	448	1	0	0	0	0	1	0	0	0	10306	912	32	4	1149	4	NDUFV1	11	67379406	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	1899099	67379406	67627110	56	26135											
HYLS1	219844	hgsc.bcm.edu	37	11	125769383	125769383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	125769383	G	T	125769383	3	4	448	1	0	0	0	0	1	0	0	0	7476	1165	41	4	122	4	HYLS1	11	125769383	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	58389977	125769383	9237133	57	26136											
PEX5	5830	bcgsc.ca	37	12	7362624	7362624	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	7362624	T	G	7362624	2	3	448	1	0	0	0	0	0	0	0	1	11755	1567	55	5		5	PEX5	12	7362624	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		7362624	126489271	58	26137											
SLC26A10	65012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	58016635	58016635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	58016635	T	C	58016635	3	2	448	1	0	0	0	0	1	0	0	0	14528	1493	52	3	879	3	SLC26A10	12	58016635	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	50654011	58016635	75835260	59	26138											
YEATS4	8089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	69759615	69759615	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	69759615	A	C	69759615	3	2	448	1	0	0	0	0	1	0	0	0	17485	246	9	5	298	5	YEATS4	12	69759615	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	11742980	69759615	64092280	60	26139											
KCNC2	3747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	75436984	75436984	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	75436984	G	T	75436984	2	4	448	1	0	0	0	0	0	0	0	1	8022	958	34	4		4	KCNC2	12	75436984	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	5677369	75436984	58414911	61	26140											
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109939240	109939240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	109939240	C	T	109939240	3	4	448	1	0	0	0	0	1	0	0	0	16892	643	23	1	1225	1	UBE3B	12	109939240	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	34502256	109939240	23912655	62	26141											
ZMYM5	9205	hgsc.bcm.edu;ucsc.edu	37	13	20398872	20398872	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	20398872	T	C	20398872	2	2	448	1	0	0	0	0	0	0	0	1	17715	1606	56	3		3	ZMYM5	13	20398872	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		20398872	94771006	63	26142											
TNFRSF19	55504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	24243093	24243093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	24243093	A	C	24243093	3	2	448	1	0	0	0	0	1	0	0	0	16304	14	1	5	1132	5	TNFRSF19	13	24243093	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	3844221	24243093	90926785	64	26143											
CKAP2	26586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	53042426	53042426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	53042426	T	A	53042426	3	1	448	1	0	0	0	0	1	0	0	0	3444	1464	51	5	1519	5	CKAP2	13	53042426	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	28799333	53042426	62127452	65	26144											
AP1G2	8906	ucsc.edu	37	14	24032631	24032631	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	24032631	A	T	24032631	2	4	448	1	0	0	0	0	0	0	0	1	733	175	7	5		5	AP1G2	14	24032631	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08		24032631	83316909	66	26145											
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38723829	38723829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	38723829	C	T	38723829	3	4	448	1	0	0	0	0	1	0	0	0	3501	652	23	1	77	1	CLEC14A	14	38723829	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	14691198	38723829	68625711	67	26146											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28510872	28510872	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	28510872	T	A	28510872	3	1	448	1	0	0	0	0	1	0	0	0	7065	1580	55	5	13062	5	HERC2	15	28510872	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		28510872	74020520	68	26147											
TMEM62	80021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43426530	43426530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	43426530	A	G	43426530	3	3	448	1	0	0	0	0	1	0	0	0	16201	449	16	3	262	3	TMEM62	15	43426530	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	14915658	43426530	59104862	69	26148											
FES	2242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	91438758	91438758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	91438758	G	T	91438758	3	4	448	1	0	0	0	0	1	0	0	0	5827	962	34	4	2509	4	FES	15	91438758	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	48012228	91438758	11092634	70	26149											
DECR2	26063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	457438	457438	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	457438	T	G	457438	3	3	448	1	0	0	0	0	1	0	0	0	4385	1580	55	5	229	5	DECR2	16	457438	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		457438	89897315	71	26150											
PIGQ	9091	hgsc.bcm.edu	37	16	624548	624548	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	624548	C	T	624548	2	4	448	1	0	0	0	0	0	0	0	1	11903	709	25	2		2	PIGQ	16	624548	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	167110	624548	89730205	72	26151											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2126139	2126139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	2126139	T	C	2126139	3	2	448	1	0	0	0	0	1	0	0	0	16618	1609	56	3	2800	3	TSC2	16	2126139	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	1501591	2126139	88228614	73	26152											
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1564455	1564455	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	1564455	A	T	1564455	3	4	448	1	0	0	0	0	1	0	0	0	12585	57	2	5	2731	5	PRPF8	17	1564455	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08		1564455	79630755	74	26153											
NEURL4	84461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7220554	7220554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	7220554	G	A	7220554	3	1	448	1	0	0	0	0	1	0	0	0	10354	971	34	2	242	2	NEURL4	17	7220554	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	5656099	7220554	73974656	75	26154											
MYH10	4628	broad.mit.edu	37	17	8452026	8452026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	-	8452026	T	-	8452026	7	5	448	1	0	1	0	1	0	0	0	0	10037	1606	56	0	5093	0	MYH10	17	8452026	Frame_Shift_Del	DEL	T	TCGA-BQ-5889-01A-11D-1589-08	1231472	8452026	72743184	76	26155											
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45915217	45915217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	45915217	T	C	45915217	3	2	448	1	0	0	0	0	1	0	0	0	13952	1406	49	3	10	3	SCRN2	17	45915217	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	37463191	45915217	35279993	77	26156											
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	62290509	62290509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	62290509	C	T	62290509	3	4	448	1	0	0	0	0	1	0	0	0	15793	594	21	2	2379	2	TEX2	17	62290509	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	16375292	62290509	18904701	78	26157											
PRPSAP1	5635	broad.mit.edu	37	17	74307703	74307703	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	-	74307703	T	-	74307703	7	5	448	1	0	1	0	1	0	0	0	0	12591	1435	50	0	83	0	PRPSAP1	17	74307703	Frame_Shift_Del	DEL	T	TCGA-BQ-5889-01A-11D-1589-08	12017194	74307703	6887507	79	26158											
DOT1L	84444	hgsc.bcm.edu	37	19	2226655	2226655	+	Missense_Mutation	SNP	C	C	A	rs113164803		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	2226655	C	A	2226655	3	1	448	1	0	0	0	0	1	0	0	0	4711	796	28	4	4241	4	DOT1L	19	2226655	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08		2226655	56902328	80	26159											
ARHGEF18	23370	hgsc.bcm.edu	37	19	7533867	7533867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	7533867	G	A	7533867	3	1	448	1	0	0	0	0	1	0	0	0	901	1058	37	1	3139	1	ARHGEF18	19	7533867	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	5307212	7533867	51595116	81	26160											
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8604865	8604865	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	8604865	T	G	8604865	3	3	448	1	0	0	0	0	1	0	0	0	10080	1609	56	5	1690	5	MYO1F	19	8604865	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	1070998	8604865	50524118	82	26161											
DOCK6	57572	hgsc.bcm.edu	37	19	11312613	11312613	+	Silent	SNP	G	G	A	rs200959822		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	11312613	G	A	11312613	2	1	448	1	0	0	0	0	0	0	0	1	4693	1136	40	1		1	DOCK6	19	11312613	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	2707748	11312613	47816370	83	26162											
PSG9	5678	broad.mit.edu	37	19	43773527	43773527	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	A	43773527	C	A	43773527	2	1	448	1	0	0	0	0	0	0	0	1	12672	697	25	4		4	PSG9	19	43773527	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	32460914	43773527	15355456	84	26163											
PHLDB3	653583	hgsc.bcm.edu	37	19	43983649	43983649	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	G	43983649	C	G	43983649	3	3	448	1	0	0	0	0	1	0	0	0	11860	478	17	4	352	4	PHLDB3	19	43983649	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	210122	43983649	15145334	85	26164											
TIMM17B	10245	hgsc.bcm.edu	37	X	48751202	48751202	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	48751202	T	C	48751202	2	2	448	1	0	0	0	0	0	0	0	1	15921	1567	55	3		3	TIMM17B	23	48751202	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		48751202	106519358	86	26165											
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101910683	101910683	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	C	101910683	G	C	101910683	2	2	448	1	0	0	0	0	0	0	0	1	6729	1248	44	4		4	GPRASP1	23	101910683	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	53159481	101910683	53359877	87	26166											
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	154157883	154157883	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	T	154157883	C	T	154157883	2	4	448	1	0	0	0	0	0	0	0	1	5352	871	31	1		1	F8	23	154157883	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	52247200	154157883	1112677	88	26167											
NOC2L	26155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	891312	891312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	891312	T	G	891312	3	3	449	1	0	0	0	0	1	0	0	0	10520	1435	50	5	1616	5	NOC2L	1	891312	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		891312	248359309	1	26168											
MMEL1	79258	broad.mit.edu	37	1	2540842	2540842	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	2540842	C	T	2540842	2	4	449	1	0	0	0	0	0	0	0	1	9653	871	31	1		1	MMEL1	1	2540842	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	1649530	2540842	246709779	2	26169											
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17322884	17322884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	17322884	G	T	17322884	3	4	449	1	0	0	0	0	1	0	0	0	1124	991	35	4	2543	4	ATP13A2	1	17322884	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	14782042	17322884	231927737	3	26170											
MRPL9	65005	broad.mit.edu	37	1	151735832	151735832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	151735832	C	T	151735832	3	4	449	1	0	0	0	0	1	0	0	0	9827	739	26	2	707	2	MRPL9	1	151735832	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	134412948	151735832	97514789	4	26171											
FCER1G	2207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161185157	161185157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	161185157	G	T	161185157	3	4	449	1	0	0	0	0	1	0	0	0	5782	971	34	4	48	4	FCER1G	1	161185157	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	9449325	161185157	88065464	5	26172											
FCGR2A	2212	hgsc.bcm.edu;broad.mit.edu	37	1	161487871	161487871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	161487871	C	A	161487871	3	1	449	1	0	0	0	0	1	0	0	0	5788	681	24	4	913	4	FCGR2A	1	161487871	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	302714	161487871	87762750	6	26173											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201030589	201030589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	201030589	A	G	201030589	3	3	449	1	0	0	0	0	1	0	0	0	2549	391	14	3	2640	3	CACNA1S	1	201030589	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	39542718	201030589	48220032	7	26174											
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201781618	201781618	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	201781618	G	T	201781618	4	4	449	1	0	0	0	0	0	1	0	0	10190	1175	41	4	5213	4	NAV1	1	201781618	Nonsense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	751029	201781618	47469003	8	26175											
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204236626	204236626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	204236626	T	A	204236626	3	1	449	1	0	0	0	0	1	0	0	0	12067	1435	50	5	2961	5	PLEKHA6	1	204236626	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	2455008	204236626	45013995	9	26176											
KIAA1804	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233518317	233518317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	233518317	A	G	233518317	3	3	449	1	0	0	0	0	1	0	0	0	8266	296	11	3	3009	3	KIAA1804	1	233518317	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	29281691	233518317	15732304	10	26177											
TBCE	6905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235599915	235599915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	235599915	A	C	235599915	3	2	449	1	0	0	0	0	1	0	0	0	15646	333	12	5	993	5	TBCE	1	235599915	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	2081598	235599915	13650706	11	26178											
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	28847964	28847964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	28847964	A	C	28847964	3	2	449	1	0	0	0	0	1	0	0	0	12031	247	9	5	3799	5	PLB1	2	28847964	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08		28847964	214351409	12	26179											
TFCP2L1	29842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	121991738	121991738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	121991738	C	T	121991738	3	4	449	1	0	0	0	0	1	0	0	0	15808	478	17	2	328	2	TFCP2L1	2	121991738	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	93143774	121991738	121207635	13	26180											
ABCA12	26154	broad.mit.edu	37	2	215880304	215880304	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	215880304	G	T	215880304	4	4	449	1	0	0	0	0	0	1	0	0	30	1311	46	4	6077	4	ABCA12	2	215880304	Nonsense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	93888566	215880304	27319069	14	26181											
AGXT	189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241808770	241808770	+	Missense_Mutation	SNP	G	G	A	rs180177208	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	241808770	G	A	241808770	3	1	449	1	0	0	0	0	1	0	0	0	404	1175	41	2	355	2	AGXT	2	241808770	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	25928466	241808770	1390603	15	26182											
PASK	23178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242065794	242065794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	242065794	G	A	242065794	3	1	449	1	0	0	0	0	1	0	0	0	11479	1377	48	2	1471	2	PASK	2	242065794	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	257024	242065794	1133579	16	26183											
SYN2	6854	broad.mit.edu;bcgsc.ca	37	3	12192767	12192767	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	12192767	C	T	12192767	2	4	449	1	0	0	0	0	0	0	0	1	15453	564	20	2		2	SYN2	3	12192767	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		12192767	185829663	17	26184											
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	44763320	44763320	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	44763320	C	G	44763320	3	3	449	1	0	0	0	0	1	0	0	0	17962	506	18	4	1017	4	ZNF502	3	44763320	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	32570553	44763320	153259110	18	26185											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47032943	47032943	+	Silent	SNP	G	G	T	rs181297174	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	47032943	G	T	47032943	2	4	449	1	0	0	0	0	0	0	0	1	10196	1277	45	4		4	NBEAL2	3	47032943	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	2269623	47032943	150989487	19	26186											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47143047	47143047	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	47143047	T	C	47143047	5	2	449	1	0	0	0	0	0	0	1	0	14144	1594	55	3	2834	3	SETD2	3	47143047	Splice_Site	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	110104	47143047	150879383	20	26187											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52696272	52696272	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	-	52696272	T	-	52696272	7	5	449	1	0	1	0	1	0	0	0	0	11498	1606	56	0	4603	0	PBRM1	3	52696272	Frame_Shift_Del	DEL	T	TCGA-BQ-5890-01A-11D-1589-08	5553225	52696272	145326158	21	26188											
PLXND1	23129	hgsc.bcm.edu	37	3	129324250	129324250	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	129324250	C	G	129324250	2	3	449	1	0	0	0	0	0	0	0	1	12134	639	23	4		4	PLXND1	3	129324250	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	76627978	129324250	68698180	22	26189											
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132410108	132410108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	132410108	T	C	132410108	3	2	449	1	0	0	0	0	1	0	0	0	10587	1551	54	3	1534	3	NPHP3	3	132410108	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	3085858	132410108	65612322	23	26190											
AMOTL2	51421	hgsc.bcm.edu	37	3	134080584	134080584	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	134080584	C	A	134080584	4	1	449	1	0	0	0	0	0	1	0	0	584	893	31	4	1017	4	AMOTL2	3	134080584	Nonsense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	1670476	134080584	63941846	24	26191											
STX18	53407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	4436571	4436571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	4436571	C	T	4436571	3	4	449	1	0	0	0	0	1	0	0	0	15353	835	29	2	399	2	STX18	4	4436571	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		4436571	186717705	25	26192											
YTHDC1	91746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69185877	69185877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	69185877	T	C	69185877	3	2	449	1	0	0	0	0	1	0	0	0	17508	1608	56	3	559	3	YTHDC1	4	69185877	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	64749306	69185877	121968399	26	26193											
ELOVL6	79071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	111119479	111119479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	111119479	C	A	111119479	3	1	449	1	0	0	0	0	1	0	0	0	5080	565	20	4	800	4	ELOVL6	4	111119479	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	41933602	111119479	80034797	27	26194											
INPP4B	8821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	143181690	143181690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	143181690	G	T	143181690	3	4	449	1	0	0	0	0	1	0	0	0	7760	1232	43	4	2195	4	INPP4B	4	143181690	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	32062211	143181690	47972586	28	26195											
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153691640	153691640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	153691640	C	T	153691640	3	4	449	1	0	0	0	0	1	0	0	0	15910	826	29	2	1025	2	TIGD4	4	153691640	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	10509950	153691640	37462636	29	26196											
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186545113	186545114	+	Missense_Mutation	DNP	GT	GT	AG	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	AG	186545114	GT	AG	186545113	3	1	449	1	0	0	0	0	1	0	0	0	14941	1368	48	2	1880	2	SORBS2	4	186545113	Missense_Mutation	DNP	GT	TCGA-BQ-5890-01A-11D-1589-08	32853473	186545113	4609163	30	26197											
FOXD1	2297	broad.mit.edu	37	5	72743507	72743507	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	72743507	G	A	72743507	2	1	449	1	0	0	0	0	0	0	0	1	6003	1161	41	2		2	FOXD1	5	72743507	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		72743507	108171753	31	26198											
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136975648	136975648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	136975648	C	T	136975648	3	4	449	1	0	0	0	0	1	0	0	0	8390	652	23	1	869	1	KLHL3	5	136975648	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	64232141	136975648	43939612	32	26199											
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137289855	137289855	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	137289855	C	G	137289855	3	3	449	1	0	0	0	0	1	0	0	0	5457	695	24	4	1135	4	FAM13B	5	137289855	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	314207	137289855	43625405	33	26200											
PCDHB9	56127	broad.mit.edu;bcgsc.ca	37	5	140567235	140567235	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	140567235	C	G	140567235	3	3	449	1	0	0	0	0	1	0	0	0	11556	827	29	4	345	4	PCDHB9	5	140567235	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	3277380	140567235	40348025	34	26201											
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161281260	161281260	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	161281260	G	A	161281260	2	1	449	1	0	0	0	0	0	0	0	1	6167	1277	45	2		2	GABRA1	5	161281260	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	20714025	161281260	19634000	35	26202											
TNXB	7148	hgsc.bcm.edu	37	6	32049190	32049190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	32049190	G	A	32049190	3	1	449	1	0	0	0	0	1	0	0	0	16358	1058	37	1	10856	1	TNXB	6	32049190	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		32049190	139065877	36	26203											
SCUBE3	222663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35213120	35213120	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	35213120	G	A	35213120	2	1	449	1	0	0	0	0	0	0	0	1	13959	962	34	2		2	SCUBE3	6	35213120	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	3163930	35213120	135901947	37	26204											
PEX6	5190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42932546	42932546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	42932546	C	T	42932546	3	4	449	1	0	0	0	0	1	0	0	0	11757	507	18	2	162	2	PEX6	6	42932546	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	7719426	42932546	128182521	38	26205											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51882414	51882414	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	51882414	G	A	51882414	2	1	449	1	0	0	0	0	0	0	0	1	11978	1165	41	2		2	PKHD1	6	51882414	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	8949868	51882414	119232653	39	26206											
SYNCRIP	10492	hgsc.bcm.edu;bcgsc.ca	37	6	86332353	86332354	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	86332354	-	T	86332353	7	5	449	1	0	1	1	0	0	0	0	0	15456	1368	48	0	1078	0	SYNCRIP	6	86332353	Frame_Shift_Ins	INS	-	TCGA-BQ-5890-01A-11D-1589-08	34449939	86332353	84782714	40	26207											
ENPP1	5167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132206107	132206107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	132206107	A	C	132206107	3	2	449	1	0	0	0	0	1	0	0	0	5131	72	3	5	2438	5	ENPP1	6	132206107	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	45873754	132206107	38908960	41	26208											
TNFAIP3	7128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	138200458	138200458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	138200458	C	A	138200458	3	1	449	1	0	0	0	0	1	0	0	0	16286	564	20	4	1898	4	TNFAIP3	6	138200458	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	5994351	138200458	32914609	42	26209											
HOXA2	3199	broad.mit.edu;bcgsc.ca	37	7	27140389	27140390	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	27140390	-	A	27140389	7	5	449	1	0	1	1	0	0	0	0	0	7299	1638	57	0	47	0	HOXA2	7	27140389	Frame_Shift_Ins	INS	-	TCGA-BQ-5890-01A-11D-1589-08		27140389	131998274	43	26210											
LRWD1	222229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102110042	102110043	+	Missense_Mutation	DNP	TC	TC	GA	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	GA	102110043	TC	GA	102110042	3	3	449	1	0	0	0	0	1	0	0	0	9054	1435	50	5	1288	5	LRWD1	7	102110042	Missense_Mutation	DNP	TC	TCGA-BQ-5890-01A-11D-1589-08	74969653	102110042	57028621	44	26211											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	3216707	3216707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	3216707	G	A	3216707	3	1	449	1	0	0	0	0	1	0	0	0	3946	1116	39	1	7623	1	CSMD1	8	3216707	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		3216707	143147315	45	26212											
ADAM7	8756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	24357759	24357760	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	CA	24357760	AC	CA	24357759	3	2	449	1	0	0	0	0	1	0	0	0	251	388	14	5	2062	5	ADAM7	8	24357759	Missense_Mutation	DNP	AC	TCGA-BQ-5890-01A-11D-1589-08	21141052	24357759	122006263	46	26213											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	121219275	121219276	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	121219276	-	A	121219275	7	5	449	1	0	1	1	0	0	0	0	0	3673	1174	41	0	1167	0	COL14A1	8	121219275	Frame_Shift_Ins	INS	-	TCGA-BQ-5890-01A-11D-1589-08	96861516	121219275	25144747	47	26214											
IFNA16	3449	broad.mit.edu	37	9	21216839	21216839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	21216839	C	T	21216839	3	4	449	1	0	0	0	0	1	0	0	0	7542	623	22	2	107	2	IFNA16	9	21216839	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		21216839	119996592	48	26215											
CBWD6	644019	hgsc.bcm.edu	37	9	69206734	69206734	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	69206734	C	T	69206734	2	4	449	1	0	0	0	0	0	0	0	1	2718	695	24	2		2	CBWD6	9	69206734	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	47989895	69206734	72006697	49	26216											
TXN	7295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113013695	113013695	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	113013695	T	C	113013695	2	2	449	1	0	0	0	0	0	0	0	1	16802	1509	53	3		3	TXN	9	113013695	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	43806961	113013695	28199736	50	26217											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	63699986	63699986	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	63699986	A	G	63699986	2	3	449	1	0	0	0	0	0	0	0	1	922	69	3	3		3	ARID5B	10	63699986	Silent	SNP	A	TCGA-BQ-5890-01A-11D-1589-08		63699986	71834761	51	26218											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124351862	124351862	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	124351862	C	A	124351862	2	1	449	1	0	0	0	0	0	0	0	1	4579	644	23	4		4	DMBT1	10	124351862	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	60651876	124351862	11182885	52	26219											
MUC2	4583	hgsc.bcm.edu	37	11	1092622	1092622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	1092622	A	G	1092622	3	3	449	1	0	0	0	0	1	0	0	0	9982	43	2	3	4559	3	MUC2	11	1092622	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08		1092622	133913894	53	26220			1	52		4	4	910	N	T_C_A	3.94987e-09
MUC2	4583	hgsc.bcm.edu	37	11	1092795	1092795	+	Silent	SNP	T	T	A	rs12786761		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	1092795	T	A	1092795	2	1	449	1	0	0	0	0	0	0	0	1	9982	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	173	1092795	133913721	54	26221			1	52		4	4	910	N	T_C_A	3.94987e-09
MUC2	4583	hgsc.bcm.edu	37	11	1093254	1093254	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	1093254	C	T	1093254	2	4	449	1	0	0	0	0	0	0	0	1	9982	639	23	1		1	MUC2	11	1093254	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	459	1093254	133913262	55	26222			1	52		4	4	910	N	T_C_A	3.94987e-09
MUC2	4583	hgsc.bcm.edu	37	11	1093531	1093531	+	Missense_Mutation	SNP	A	A	G	rs56104295		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	1093531	A	G	1093531	3	3	449	1	0	0	0	0	1	0	0	0	9982	188	7	3	5468	3	MUC2	11	1093531	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	277	1093531	133912985	56	26223			1	52		4	4	910	N	T_C_A	3.94987e-09
CD81	975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2417109	2417109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	2417109	G	T	2417109	3	4	449	1	0	0	0	0	1	0	0	0	3041	1377	48	4	492	4	CD81	11	2417109	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	1323578	2417109	132589407	57	26224											
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	21581738	21581738	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	21581738	T	G	21581738	3	3	449	1	0	0	0	0	1	0	0	0	10340	1493	52	5	1856	5	NELL1	11	21581738	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	19164629	21581738	113424778	58	26225											
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26742996	26742996	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	26742996	A	T	26742996	3	4	449	1	0	0	0	0	1	0	0	0	14677	420	15	5	1650	5	SLC5A12	11	26742996	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	5161258	26742996	108263520	59	26226											
FLRT1	23769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63884401	63884401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	63884401	T	A	63884401	3	1	449	1	0	0	0	0	1	0	0	0	5945	1551	54	5	664	5	FLRT1	11	63884401	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	37141405	63884401	71122115	60	26227											
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67265787	67265787	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	67265787	G	A	67265787	2	1	449	1	0	0	0	0	0	0	0	1	11957	1194	42	2		2	PITPNM1	11	67265787	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	3381386	67265787	67740729	61	26228											
KDM5A	5927	broad.mit.edu	37	12	472130	472130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	472130	T	C	472130	3	2	449	1	0	0	0	0	1	0	0	0	8140	1594	55	3	4497	3	KDM5A	12	472130	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		472130	133379765	62	26229											
WNK1	65125	broad.mit.edu;bcgsc.ca	37	12	977170	977170	+	Missense_Mutation	SNP	C	C	T	rs200794710		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	977170	C	T	977170	3	4	449	1	0	0	0	0	1	0	0	0	17389	768	27	1	2571	1	WNK1	12	977170	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	505040	977170	132874725	63	26230											
KCNC2	3747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	75441966	75441966	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	75441966	A	C	75441966	3	2	449	1	0	0	0	0	1	0	0	0	8022	362	13	5	243	5	KCNC2	12	75441966	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	74464796	75441966	58409929	64	26231											
NUAK1	9891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	106460987	106460987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	106460987	G	T	106460987	3	4	449	1	0	0	0	0	1	0	0	0	10719	1377	48	4	410	4	NUAK1	12	106460987	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	31019021	106460987	27390908	65	26232											
TBX3	6926	broad.mit.edu	37	12	115120983	115120983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	115120983	G	A	115120983	3	1	449	1	0	0	0	0	1	0	0	0	15671	1116	39	1	2240	1	TBX3	12	115120983	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	8659996	115120983	18730912	66	26233											
FZD10	11211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	130648407	130648407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	130648407	C	A	130648407	3	1	449	1	0	0	0	0	1	0	0	0	6136	507	18	4	922	4	FZD10	12	130648407	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	15527424	130648407	3203488	67	26234											
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25352542	25352542	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	25352542	T	C	25352542	2	2	449	1	0	0	0	0	0	0	0	1	13474	1722	60	3		3	RNF17	13	25352542	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		25352542	89817336	68	26235											
PABPC3	5042	hgsc.bcm.edu	37	13	25671451	25671451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	25671451	A	G	25671451	3	3	449	1	0	0	0	0	1	0	0	0	11372	246	9	3	1117	3	PABPC3	13	25671451	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	318909	25671451	89498427	69	26236											
SYNE2	23224	broad.mit.edu	37	14	64669634	64669634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	64669634	G	C	64669634	3	2	449	1	0	0	0	0	1	0	0	0	15458	1290	45	4	18548	4	SYNE2	14	64669634	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		64669634	42679906	70	26237											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75981607	75981607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	75981607	C	T	75981607	3	4	449	1	0	0	0	0	1	0	0	0	3962	739	26	2	5201	2	CSPG4	15	75981607	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		75981607	26549785	71	26238											
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	94884070	94884070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	94884070	G	T	94884070	3	4	449	1	0	0	0	0	1	0	0	0	9408	942	33	4	908	4	MCTP2	15	94884070	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	18902463	94884070	7647322	72	26239											
PRSS21	10942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2868724	2868724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	2868724	C	G	2868724	3	3	449	1	0	0	0	0	1	0	0	0	12628	595	21	4	318	4	PRSS21	16	2868724	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		2868724	87486029	73	26240											
ZNF597	146434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3487524	3487524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	3487524	G	C	3487524	3	2	449	1	0	0	0	0	1	0	0	0	18039	1203	42	4	1103	4	ZNF597	16	3487524	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	618800	3487524	86867229	74	26241											
USP31	57478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	23083424	23083424	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	23083424	G	T	23083424	2	4	449	1	0	0	0	0	0	0	0	1	17074	987	35	4		4	USP31	16	23083424	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	19595900	23083424	67271329	75	26242											
NUP93	9688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56792502	56792502	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	56792502	T	C	56792502	2	2	449	1	0	0	0	0	0	0	0	1	10779	1490	52	3		3	NUP93	16	56792502	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	33709078	56792502	33562251	76	26243											
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69368791	69368791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	69368791	C	G	69368791	3	3	449	1	0	0	0	0	1	0	0	0	3666	710	25	4	804	4	COG8	16	69368791	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	12576289	69368791	20985962	77	26244											
ZNF778	197320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89294017	89294017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	89294017	C	T	89294017	4	4	449	1	0	0	0	0	0	1	0	0	18163	528	19	1	1255	1	ZNF778	16	89294017	Nonsense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	19925226	89294017	1060736	78	26245											
DEF8	54849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90015887	90015887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	90015887	C	A	90015887	3	1	449	1	0	0	0	0	1	0	0	0	4389	855	30	4	16	4	DEF8	16	90015887	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	721870	90015887	338866	79	26246											
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7755372	7755372	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	7755372	T	G	7755372	2	3	449	1	0	0	0	0	0	0	0	1	8145	1596	56	5		5	KDM6B	17	7755372	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		7755372	73439838	80	26247											
KPNB1	3837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45753779	45753779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	45753779	G	T	45753779	3	4	449	1	0	0	0	0	1	0	0	0	8442	1339	47	4	1979	4	KPNB1	17	45753779	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	37998407	45753779	35441431	81	26248											
ERN1	2081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62121548	62121548	+	Missense_Mutation	SNP	G	G	A	rs185854736		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	62121548	G	A	62121548	3	1	449	1	0	0	0	0	1	0	0	0	5239	1115	39	1	203	1	ERN1	17	62121548	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	16367769	62121548	19073662	82	26249											
ABCA9	10350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66981100	66981100	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	66981100	G	A	66981100	2	1	449	1	0	0	0	0	0	0	0	1	39	1164	41	2		2	ABCA9	17	66981100	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	4859552	66981100	14214110	83	26250											
ABCA10	10349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67170778	67170778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	67170778	G	T	67170778	3	4	449	1	0	0	0	0	1	0	0	0	29	1165	41	4	1677	4	ABCA10	17	67170778	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	189678	67170778	14024432	84	26251											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80050833	80050833	+	Missense_Mutation	SNP	G	G	A	rs200752265	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	80050833	G	A	80050833	3	1	449	1	0	0	0	0	1	0	0	0	5690	1115	39	1	6969	1	FASN	17	80050833	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	12880055	80050833	1144377	85	26252											
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	879943	G	C	879943	3	2	449	1	0	0	0	0	1	0	0	0	9441	1136	40	4	1322	4	MED16	19	879943	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		879943	58249040	86	26253											
ZNF558	148156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8922351	8922351	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	8922351	G	C	8922351	3	2	449	1	0	0	0	0	1	0	0	0	18001	971	34	4	397	4	ZNF558	19	8922351	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	8042408	8922351	50206632	87	26254											
PPP1R15A	23645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49379135	49379135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	49379135	G	A	49379135	3	1	449	1	0	0	0	0	1	0	0	0	12373	1029	36	2	1936	2	PPP1R15A	19	49379135	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	40456784	49379135	9749848	88	26255											
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58018434	58018434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	58018434	T	C	58018434	3	2	449	1	0	0	0	0	1	0	0	0	18158	1725	60	3	985	3	ZNF773	19	58018434	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	8639299	58018434	1110549	89	26256											
ZNF418	147686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58437999	58437999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	58437999	T	C	58437999	3	2	449	1	0	0	0	0	1	0	0	0	17907	1609	56	3	484	3	ZNF418	19	58437999	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	419565	58437999	690984	90	26257											
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	8741054	8741054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	8741054	G	T	8741054	3	4	449	1	0	0	0	0	1	0	0	0	12034	1275	44	4	2755	4	PLCB1	20	8741054	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		8741054	54284466	91	26258											
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43726464	43726464	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	43726464	A	T	43726464	3	4	449	1	0	0	0	0	1	0	0	0	8095	420	15	5	639	5	KCNS1	20	43726464	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	34985410	43726464	19299056	92	26259											
WFDC2	10406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44108666	44108666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	A	44108666	G	A	44108666	3	1	449	1	0	0	0	0	1	0	0	0	17364	1377	48	2	318	2	WFDC2	20	44108666	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	382202	44108666	18916854	93	26260											
DNTTIP1	116092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44424050	44424050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	44424050	A	G	44424050	3	3	449	1	0	0	0	0	1	0	0	0	4683	333	12	3	354	3	DNTTIP1	20	44424050	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	315384	44424050	18601470	94	26261											
PSMA7	5688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60714841	60714841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	G	60714841	T	G	60714841	3	3	449	1	0	0	0	0	1	0	0	0	12682	1609	56	5	422	5	PSMA7	20	60714841	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	16290791	60714841	2310679	95	26262											
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62642772	62642772	+	Silent	SNP	G	G	C	rs199552405	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	62642772	G	C	62642772	2	2	449	1	0	0	0	0	0	0	0	1	12584	1074	38	4		4	PRPF6	20	62642772	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	1927931	62642772	382748	96	26263											
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34925625	34925625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	T	34925625	C	T	34925625	3	4	449	1	0	0	0	0	1	0	0	0	14939	893	31	1	4098	1	SON	21	34925625	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		34925625	13204270	97	26264											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123200037	123200037	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	C	123200037	T	C	123200037	2	2	449	1	0	0	0	0	0	0	0	1	15255	1828	64	3		3	STAG2	23	123200037	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		123200037	32070523	98	26265											
RER1	11079	broad.mit.edu	37	1	2332308	2332308	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	G	2332308	C	G	2332308	3	3	450	1	0	0	0	0	1	0	0	0	13243	893	31	4	313	4	RER1	1	2332308	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		2332308	246918313	1	26266											
NFIA	4774	broad.mit.edu	37	1	61554264	61554264	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	61554264	T	C	61554264	2	2	450	1	0	0	0	0	0	0	0	1	10377	1509	53	3		3	NFIA	1	61554264	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	59221956	61554264	187696357	2	26267											
TMED5	50999	ucsc.edu	37	1	93620447	93620447	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	93620447	T	A	93620447	5	1	450	1	0	0	0	0	0	0	1	0	16019	1594	55	5	223	5	TMED5	1	93620447	Splice_Site	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	32066183	93620447	155630174	3	26268											
ANKRD35	148741	bcgsc.ca	37	1	145555716	145555716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	145555716	C	A	145555716	3	1	450	1	0	0	0	0	1	0	0	0	664	827	29	4	70	4	ANKRD35	1	145555716	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	51935269	145555716	103694905	4	26269											
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61709536	61709536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	61709536	G	A	61709536	3	1	450	1	0	0	0	0	1	0	0	0	17457	1059	37	1	276	1	XPO1	2	61709536	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		61709536	181489837	5	26270											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141643776	141643776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	141643776	G	C	141643776	3	2	450	1	0	0	0	0	1	0	0	0	8962	1299	45	4	10176	4	LRP1B	2	141643776	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	79934240	141643776	101555597	6	26271											
ARL6IP6	151188	broad.mit.edu	37	2	153591621	153591621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	153591621	C	T	153591621	3	4	450	1	0	0	0	0	1	0	0	0	945	913	32	2	578	2	ARL6IP6	2	153591621	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	11947845	153591621	89607752	7	26272											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	186671400	186671400	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	186671400	T	C	186671400	2	2	450	1	0	0	0	0	0	0	0	1	6082	1461	51	3		3	FSIP2	2	186671400	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	33079779	186671400	56527973	8	26273											
ACADL	33	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	211057526	211057526	+	Splice_Site	DEL	A	A	-	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	-	211057526	A	-	211057526	8	5	450	1	0	1	0	1	0	0	1	0	112	405	14	0	99	0	ACADL	2	211057526	Splice_Site	DEL	A	TCGA-BQ-5891-01A-11D-1589-08	24386126	211057526	32141847	9	26274	327	2									
ACADL	33	bcgsc.ca	37	2	211057527	211057527	+	Splice_Site	SNP	C	C	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	G	211057527	C	G	211057527	5	3	450	1	0	0	0	0	0	0	1	0	112	579	20	4	100	4	ACADL	2	211057527	Splice_Site	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	1	211057527	32141846	10	26275	327	2									
OXTR	5021	ucsc.edu;bcgsc.ca	37	3	8809676	8809676	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	8809676	G	A	8809676	2	1	450	1	0	0	0	0	0	0	0	1	11345	1335	47	2		2	OXTR	3	8809676	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		8809676	189212754	11	26276											
CCR5	1234	broad.mit.edu;bcgsc.ca	37	3	46415326	46415326	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	46415326	C	T	46415326	2	4	450	1	0	0	0	0	0	0	0	1	2946	912	32	2		2	CCR5	3	46415326	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	37605650	46415326	151607104	12	26277											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47162849	47162850	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	-	47162850	TT	-	47162849	7	5	450	1	0	1	0	1	0	0	0	0	14144	1609	56	0	4493	0	SETD2	3	47162849	Frame_Shift_Del	DEL	TT	TCGA-BQ-5891-01A-11D-1589-08	747523	47162849	150859581	13	26278											
ACTL6A	86	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179304341	179304341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	179304341	G	A	179304341	3	1	450	1	0	0	0	0	1	0	0	0	198	1116	39	1	1180	1	ACTL6A	3	179304341	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	132141492	179304341	18718089	14	26279											
SH3BP2	6452	hgsc.bcm.edu	37	4	2824707	2824707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	2824707	T	C	2824707	3	2	450	1	0	0	0	0	1	0	0	0	14258	1783	62	3	447	3	SH3BP2	4	2824707	Missense_Mutation	SNP	T	TCGA-BQ-5891-01A-11D-1589-08		2824707	188329569	15	26280											
MAML3	55534	hgsc.bcm.edu	37	4	140811129	140811129	+	Silent	SNP	T	T	C	rs62344941		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	140811129	T	C	140811129	2	2	450	1	0	0	0	0	0	0	0	1	9214	1722	60	3		3	MAML3	4	140811129	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	137986422	140811129	50343147	16	26281											
HAND2	9464	broad.mit.edu	37	4	174449979	174449979	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	174449979	C	T	174449979	2	4	450	1	0	0	0	0	0	0	0	1	6957	697	25	2		2	HAND2	4	174449979	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	33638850	174449979	16704297	17	26282											
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136963990	136963990	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	136963990	G	A	136963990	2	1	450	1	0	0	0	0	0	0	0	1	8390	1136	40	1		1	KLHL3	5	136963990	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		136963990	43951270	18	26283											
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140711928	140711928	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	140711928	G	A	140711928	2	1	450	1	0	0	0	0	0	0	0	1	11557	1074	38	1		1	PCDHGA1	5	140711928	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	3747938	140711928	40203332	19	26284											
DRD1	1812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	174870046	174870046	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	174870046	G	A	174870046	2	1	450	1	0	0	0	0	0	0	0	1	4758	1020	36	2		2	DRD1	5	174870046	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	34158118	174870046	6045214	20	26285											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42657391	42657391	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	42657391	G	A	42657391	2	1	450	1	0	0	0	0	0	0	0	1	16914	933	33	2		2	UBR2	6	42657391	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		42657391	128457676	21	26286											
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83862077	83862077	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	G	83862077	A	G	83862077	2	3	450	1	0	0	0	0	0	0	0	1	4709	388	14	3		3	DOPEY1	6	83862077	Silent	SNP	A	TCGA-BQ-5891-01A-11D-1589-08	41204686	83862077	87252990	22	26287											
USP45	85015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	99930682	99930682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	99930682	C	A	99930682	3	1	450	1	0	0	0	0	1	0	0	0	17088	912	32	4	1696	4	USP45	6	99930682	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	16068605	99930682	71184385	23	26288											
HOXA5	3202	broad.mit.edu	37	7	27182685	27182685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	27182685	C	T	27182685	3	4	450	1	0	0	0	0	1	0	0	0	7302	768	27	1	278	1	HOXA5	7	27182685	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		27182685	131955978	24	26289											
C7orf41	222166	broad.mit.edu	37	7	30197075	30197075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	30197075	G	A	30197075	3	1	450	1	0	0	0	0	1	0	0	0	2393	942	33	2	317	2	C7orf41	7	30197075	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	3014390	30197075	128941588	25	26290											
IRF5	3663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128587532	128587532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	128587532	C	T	128587532	3	4	450	1	0	0	0	0	1	0	0	0	7840	739	26	2	748	2	IRF5	7	128587532	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	98390457	128587532	30551131	26	26291											
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	131241029	G	C	131241029	2	2	450	1	0	0	0	0	0	0	0	1	12187	987	35	4		4	PODXL	7	131241029	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	2653497	131241029	27897634	27	26292											
KIAA1429	25962	broad.mit.edu	37	8	95503873	95503873	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	95503873	T	C	95503873	2	2	450	1	0	0	0	0	0	0	0	1	8238	1567	55	3		3	KIAA1429	8	95503873	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08		95503873	50860149	28	26293											
BAAT	570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104125282	104125282	+	Missense_Mutation	SNP	C	C	T	rs141722672		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	104125282	C	T	104125282	3	4	450	1	0	0	0	0	1	0	0	0	1280	536	19	1	575	1	BAAT	9	104125282	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		104125282	37088149	29	26294											
ADAMTSL2	9719	hgsc.bcm.edu	37	9	136419613	136419613	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	136419613	C	T	136419613	2	4	450	1	0	0	0	0	0	0	0	1	275	639	23	1		1	ADAMTSL2	9	136419613	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	32294331	136419613	4793818	30	26295											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108427534	108427534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	108427534	T	C	108427534	3	2	450	1	0	0	0	0	1	0	0	0	14943	1493	52	3	1564	3	SORCS1	10	108427534	Missense_Mutation	SNP	T	TCGA-BQ-5891-01A-11D-1589-08		108427534	27107213	31	26296											
OR52J3	119679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5068288	5068288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	5068288	A	T	5068288	3	4	450	1	0	0	0	0	1	0	0	0	11129	217	8	5	535	5	OR52J3	11	5068288	Missense_Mutation	SNP	A	TCGA-BQ-5891-01A-11D-1589-08		5068288	129938228	32	26297											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117866403	117866403	+	Missense_Mutation	SNP	G	G	A	rs145975996		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	117866403	G	A	117866403	3	1	450	1	0	0	0	0	1	0	0	0	7627	1058	37	1	810	1	IL10RA	11	117866403	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	112798115	117866403	17140113	33	26298											
ART4	420	broad.mit.edu	37	12	14993941	14993941	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	14993941	C	T	14993941	4	4	450	1	0	0	0	0	0	1	0	0	999	740	26	2	661	2	ART4	12	14993941	Nonsense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		14993941	118857954	34	26299											
TDG	6996	hgsc.bcm.edu	37	12	104378526	104378526	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	104378526	G	T	104378526	5	4	450	1	0	0	0	0	0	0	1	0	15737	985	34	4	822	4	TDG	12	104378526	Splice_Site	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	89384585	104378526	29473369	35	26300											
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	112036797	C	T	112036797	2	4	450	1	0	0	0	0	0	0	0	1	1211	796	28	2		2	ATXN2	12	112036797	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	7658271	112036797	21815098	36	26301											
EFHA1	221154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	22088516	22088516	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	22088516	C	T	22088516	2	4	450	1	0	0	0	0	0	0	0	1	4945	813	29	2		2	EFHA1	13	22088516	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		22088516	93081362	37	26302											
KL	9365	hgsc.bcm.edu;broad.mit.edu	37	13	33591068	33591068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	33591068	G	C	33591068	3	2	450	1	0	0	0	0	1	0	0	0	8338	1145	40	4	492	4	KL	13	33591068	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	11502552	33591068	81578810	38	26303	328	2									
KL	9365	bcgsc.ca	37	13	33591076	33591077	+	Missense_Mutation	DNP	CC	CC	TG	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	TG	33591077	CC	TG	33591076	3	4	450	1	0	0	0	0	1	0	0	0	8338	506	18	2	500	2	KL	13	33591076	Missense_Mutation	DNP	CC	TCGA-BQ-5891-01A-11D-1589-08	8	33591076	81578802	39	26304	328	2									
COX8C	341947	hgsc.bcm.edu	37	14	93813725	93813725	+	Silent	SNP	G	G	T	rs201840112		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	93813725	G	T	93813725	2	4	450	1	0	0	0	0	0	0	0	1	3788	1190	42	4		4	COX8C	14	93813725	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		93813725	13535815	40	26305											
AKT1	207	hgsc.bcm.edu	37	14	105237141	105237141	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	105237141	G	C	105237141	3	2	450	1	0	0	0	0	1	0	0	0	478	1261	44	4	146	4	AKT1	14	105237141	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	11423416	105237141	2112399	41	26306											
PKD1	5310	hgsc.bcm.edu	37	16	2168405	2168405	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	2168405	G	A	2168405	2	1	450	1	0	0	0	0	0	0	0	1	11970	987	35	2		2	PKD1	16	2168405	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		2168405	88186348	42	26307											
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu	37	16	67840335	67840335	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	67840335	C	T	67840335	2	4	450	1	0	0	0	0	0	0	0	1	13039	813	29	2		2	RANBP10	16	67840335	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	65671930	67840335	22514418	43	26308											
ZFHX3	463	broad.mit.edu	37	16	72984648	72984648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	72984648	A	C	72984648	3	2	450	1	0	0	0	0	1	0	0	0	17646	159	6	5	8207	5	ZFHX3	16	72984648	Missense_Mutation	SNP	A	TCGA-BQ-5891-01A-11D-1589-08	5144313	72984648	17370105	44	26309											
AKAP10	11216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19861611	19861611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	G	19861611	A	G	19861611	3	3	450	1	0	0	0	0	1	0	0	0	446	14	1	3	1443	3	AKAP10	17	19861611	Missense_Mutation	SNP	A	TCGA-BQ-5891-01A-11D-1589-08		19861611	61333599	45	26310											
SLC14A1	6563	bcgsc.ca	37	18	43319599	43319599	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	43319599	G	A	43319599	4	1	450	1	0	0	0	0	0	1	0	0	14409	1212	42	2	1112	2	SLC14A1	18	43319599	Nonsense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		43319599	34757649	46	26311											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9065718	9065718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	9065718	G	T	9065718	3	4	450	1	0	0	0	0	1	0	0	0	9980	1174	41	4	22123	4	MUC16	19	9065718	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		9065718	50063265	47	26312											
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53958709	53958709	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	53958709	T	A	53958709	3	1	450	1	0	0	0	0	1	0	0	0	18148	1403	49	5	959	5	ZNF761	19	53958709	Missense_Mutation	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	44892991	53958709	5170274	48	26313	329	2									
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53958711	53958711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	53958711	G	A	53958711	3	1	450	1	0	0	0	0	1	0	0	0	18148	1000	35	2	961	2	ZNF761	19	53958711	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	2	53958711	5170272	49	26314	329	2									
GGTLC1	92086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23967129	23967129	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	23967129	C	T	23967129	2	4	450	1	0	0	0	0	0	0	0	1	6372	465	17	2		2	GGTLC1	20	23967129	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		23967129	39058391	50	26315											
MATN4	8785	broad.mit.edu	37	20	43927153	43927153	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	43927153	G	A	43927153	2	1	450	1	0	0	0	0	0	0	0	1	9343	1049	37	1		1	MATN4	20	43927153	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	19960024	43927153	19098367	51	26316											
OGFR	11054	hgsc.bcm.edu	37	20	61443716	61443716	+	Missense_Mutation	SNP	G	G	A	rs41309371		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	61443716	G	A	61443716	3	1	450	1	0	0	0	0	1	0	0	0	10850	1116	39	1	775	1	OGFR	20	61443716	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	17516563	61443716	1581804	52	26317											
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	19685347	19685347	+	Silent	SNP	T	T	G	rs111276490	alternate_allele	TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	G	19685347	T	G	19685347	2	3	450	1	0	0	0	0	0	0	0	1	16258	1588	55	5		5	TMPRSS15	21	19685347	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08		19685347	28444548	53	26318											
TXNRD2	10587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19870863	19870863	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	19870863	A	T	19870863	2	4	450	1	0	0	0	0	0	0	0	1	16820	126	5	5		5	TXNRD2	22	19870863	Silent	SNP	A	TCGA-BQ-5891-01A-11D-1589-08		19870863	31433703	54	26319											
CCDC116	164592	broad.mit.edu;bcgsc.ca	37	22	21989095	21989095	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	G	21989095	C	G	21989095	4	3	450	1	0	0	0	0	0	1	0	0	2755	838	29	4	753	4	CCDC116	22	21989095	Nonsense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	2118232	21989095	29315471	55	26320											
SH3BP1	23616	hgsc.bcm.edu	37	22	38051328	38051328	+	Silent	SNP	C	C	A	rs61678571	alternate_allele	TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	A	38051328	C	A	38051328	2	1	450	1	0	0	0	0	0	0	0	1	14257	639	23	4		4	SH3BP1	22	38051328	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	16062233	38051328	13253238	56	26321											
SHROOM4	57477	hgsc.bcm.edu	37	X	50350698	50350698	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	T	50350698	C	T	50350698	2	4	450	1	0	0	0	0	0	0	0	1	14309	680	24	2		2	SHROOM4	23	50350698	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		50350698	104919862	57	26322											
COL4A6	1288	broad.mit.edu	37	X	107434729	107434729	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	C	107434729	T	C	107434729	2	2	450	1	0	0	0	0	0	0	0	1	3697	1567	55	3		3	COL4A6	23	107434729	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	57084031	107434729	47835831	58	26323											
RCAN3	11123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	24840967	24840967	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	24840967	T	-	24840967	7	5	451	1	0	1	0	1	0	0	0	0	13183	1490	52	0	107	0	RCAN3	1	24840967	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08		24840967	224409654	1	26324											
GJB5	2709	broad.mit.edu	37	1	35223072	35223072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	35223072	C	A	35223072	3	1	451	1	0	0	0	0	1	0	0	0	6418	506	18	4	143	4	GJB5	1	35223072	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	10382105	35223072	214027549	2	26325											
ZNF691	51058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43317094	43317094	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	43317094	C	A	43317094	2	1	451	1	0	0	0	0	0	0	0	1	18108	813	29	4		4	ZNF691	1	43317094	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	8094022	43317094	205933527	3	26326											
FGGY	55277	hgsc.bcm.edu	37	1	60139806	60139806	+	Splice_Site	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	60139806	G	C	60139806	5	2	451	1	0	0	0	0	0	0	1	0	5878	1275	44	4	1639	4	FGGY	1	60139806	Splice_Site	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	16822712	60139806	189110815	4	26327											
CACHD1	57685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	65143946	65143946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	65143946	G	A	65143946	3	1	451	1	0	0	0	0	1	0	0	0	2539	1232	43	2	3134	2	CACHD1	1	65143946	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	5004140	65143946	184106675	5	26328											
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171247924	171247924	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	171247924	A	T	171247924	3	4	451	1	0	0	0	0	1	0	0	0	5961	449	16	5	555	5	FMO1	1	171247924	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	106103978	171247924	78002697	6	26329											
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200973948	200973948	+	Silent	SNP	C	C	A	rs140945427	alternate_allele	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	200973948	C	A	200973948	2	1	451	1	0	0	0	0	0	0	0	1	8296	842	30	4		4	KIF21B	1	200973948	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	29726024	200973948	48276673	7	26330											
TMEM81	388730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205053045	205053045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	205053045	A	C	205053045	3	2	451	1	0	0	0	0	1	0	0	0	16217	246	9	5	367	5	TMEM81	1	205053045	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	4079097	205053045	44197576	8	26331											
NT5C1B	93034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	18767651	18767651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	18767651	G	C	18767651	3	2	451	1	0	0	0	0	1	0	0	0	10693	1386	48	4	1553	4	NT5C1B	2	18767651	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		18767651	224431722	9	26332											
GPR155	151556	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	175346653	175346657	+	Frame_Shift_Del	DEL	GTTAA	GTTAA	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GTTAA	GTTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	175346657	GTTAA	-	175346653	7	5	451	1	0	1	0	1	0	0	0	0	6667	1261	44	0	2640	0	GPR155	2	175346653	Frame_Shift_Del	DEL	GTTAA	TCGA-BQ-5892-01A-11D-1589-08	156579002	175346653	67852720	10	26333											
CPO	130749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	207827299	207827299	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	207827299	C	T	207827299	2	4	451	1	0	0	0	0	0	0	0	1	3822	547	19	1		1	CPO	2	207827299	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	32480646	207827299	35372074	11	26334											
VHL	7428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	10191506	10191506	+	Missense_Mutation	SNP	C	C	G	rs5030820	bycluster	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	10191506	C	G	10191506	3	3	451	1	0	0	0	0	1	0	0	0	17174	643	23	4	509	4	VHL	3	10191506	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		10191506	187830924	12	26335											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52443866	52443866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	52443866	C	T	52443866	3	4	451	1	0	0	0	0	1	0	0	0	1311	797	28	2	2228	2	BAP1	3	52443866	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	42252360	52443866	145578564	13	26336											
HAUS3	79441	hgsc.bcm.edu	37	4	2242527	2242530	+	Frame_Shift_Del	DEL	TTCA	TTCA	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	TTCA	TTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	2242530	TTCA	-	2242527	7	5	451	1	0	1	0	1	0	0	0	0	6974	1722	60	0	1680	0	HAUS3	4	2242527	Frame_Shift_Del	DEL	TTCA	TCGA-BQ-5892-01A-11D-1589-08		2242527	188911749	14	26337	330	2									
HAUS3	79441	hgsc.bcm.edu;bcgsc.ca	37	4	2242534	2242534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	2242534	A	C	2242534	3	2	451	1	0	0	0	0	1	0	0	0	6974	159	6	5	1687	5	HAUS3	4	2242534	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	7	2242534	188911742	15	26338	330	2									
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	41015603	41015603	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	41015603	T	A	41015603	3	1	451	1	0	0	0	0	1	0	0	0	761	1725	60	5	1499	5	APBB2	4	41015603	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	38773069	41015603	150138673	16	26339											
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68777129	68777129	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	68777129	C	T	68777129	2	4	451	1	0	0	0	0	0	0	0	1	16251	680	24	2		2	TMPRSS11A	4	68777129	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	27761526	68777129	122377147	17	26340											
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113333046	113333046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	113333046	G	A	113333046	3	1	451	1	0	0	0	0	1	0	0	0	544	1261	44	2	350	2	ALPK1	4	113333046	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	44555917	113333046	77821230	18	26341											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123128292	123128292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	123128292	G	C	123128292	3	2	451	1	0	0	0	0	1	0	0	0	8215	1029	36	4	1580	4	KIAA1109	4	123128292	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	9795246	123128292	68025984	19	26342											
HTR1A	3350	broad.mit.edu	37	5	63257393	63257393	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	63257393	G	A	63257393	2	1	451	1	0	0	0	0	0	0	0	1	7443	962	34	2		2	HTR1A	5	63257393	Silent	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		63257393	117657867	20	26343											
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	70800508	70800508	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	70800508	C	T	70800508	4	4	451	1	0	0	0	0	0	1	0	0	1395	479	17	2	2364	2	BDP1	5	70800508	Nonsense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	7543115	70800508	110114752	21	26344											
SAR1B	51128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	133956720	133956720	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	133956720	T	-	133956720	7	5	451	1	0	1	0	1	0	0	0	0	13853	1722	60	0	535	0	SAR1B	5	133956720	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08	63156212	133956720	46958540	22	26345											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	179192969	179192987	+	Frame_Shift_Del	DEL	GGGTCTGCAGGGCAGACCT	GGGTCTGCAGGGCAGACCT	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GGGTCTGCAGGGCAGACCT	GGGTCTGCAGGGCAGACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	179192987	GGGTCTGCAGGGCAGACCT	-	179192969	7	5	451	1	0	1	0	1	0	0	0	0	9212	1116	39	0	964	0	MAML1	5	179192969	Frame_Shift_Del	DEL	GGGTCTGCAGGGCAGACCT	TCGA-BQ-5892-01A-11D-1589-08	45236249	179192969	1722291	23	26346											
SCGN	10590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25701539	25701539	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	25701539	T	C	25701539	2	2	451	1	0	0	0	0	0	0	0	1	13916	1673	58	3		3	SCGN	6	25701539	Silent	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		25701539	145413528	24	26347											
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31937328	31937328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	31937328	G	A	31937328	3	1	451	1	0	0	0	0	1	0	0	0	14372	1291	45	2	3687	2	SKIV2L	6	31937328	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	6235789	31937328	139177739	25	26348											
LAMB1	3912	broad.mit.edu	37	7	107580801	107580801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	107580801	A	G	107580801	3	3	451	1	0	0	0	0	1	0	0	0	8617	188	7	3	2006	3	LAMB1	7	107580801	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08		107580801	51557862	26	26349											
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	122130209	122130210	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	122130210	-	A	122130209	7	5	451	1	0	1	1	0	0	0	0	0	2573	1406	49	0	2236	0	CADPS2	7	122130209	Frame_Shift_Ins	INS	-	TCGA-BQ-5892-01A-11D-1589-08	14549408	122130209	37008454	27	26350											
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	22473664	22473664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	22473664	C	T	22473664	3	4	451	1	0	0	0	0	1	0	0	0	8272	739	26	2	1798	2	KIAA1967	8	22473664	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		22473664	123890358	28	26351											
KCTD9	54793	broad.mit.edu	37	8	25293942	25293942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	25293942	C	T	25293942	3	4	451	1	0	0	0	0	1	0	0	0	8123	739	26	2	634	2	KCTD9	8	25293942	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	2820278	25293942	121070080	29	26352											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	30704070	30704070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	30704070	T	C	30704070	3	2	451	1	0	0	0	0	1	0	0	0	15791	1464	51	3	5921	3	TEX15	8	30704070	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	5410128	30704070	115659952	30	26353											
RORB	6096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	77286722	77286722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	77286722	G	A	77286722	3	1	451	1	0	0	0	0	1	0	0	0	13542	943	33	2	1163	2	RORB	9	77286722	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		77286722	63926709	31	26354											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	113265327	113265327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	113265327	G	-	113265327	7	5	451	1	0	1	0	1	0	0	0	0	15432	1115	39	0	9413	0	SVEP1	9	113265327	Frame_Shift_Del	DEL	G	TCGA-BQ-5892-01A-11D-1589-08	35978605	113265327	27948104	32	26355											
CDK5RAP2	55755	broad.mit.edu	37	9	123313163	123313163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	123313163	C	A	123313163	3	1	451	1	0	0	0	0	1	0	0	0	3148	912	32	4	5608	4	CDK5RAP2	9	123313163	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	10047836	123313163	17900268	33	26356											
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128193076	128193076	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	128193076	C	G	128193076	3	3	451	1	0	0	0	0	1	0	0	0	1625	912	32	4	1434	4	C10orf90	10	128193076	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		128193076	7341671	34	26357											
OR52B2	255725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6190974	6190974	+	Missense_Mutation	SNP	T	T	A	rs35364339	alternate_allele	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	6190974	T	A	6190974	3	1	451	1	0	0	0	0	1	0	0	0	11118	1696	59	5	391	5	OR52B2	11	6190974	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		6190974	128815542	35	26358											
MTCH2	23788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47653227	47653227	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	47653227	G	-	47653227	7	5	451	1	0	1	0	1	0	0	0	0	9921	1000	35	0	537	0	MTCH2	11	47653227	Frame_Shift_Del	DEL	G	TCGA-BQ-5892-01A-11D-1589-08	41462253	47653227	87353289	36	26359											
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47819410	47819410	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	47819410	A	C	47819410	2	2	451	1	0	0	0	0	0	0	0	1	10764	407	15	5		5	NUP160	11	47819410	Silent	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	166183	47819410	87187106	37	26360											
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55371448	55371448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	55371448	C	A	55371448	3	1	451	1	0	0	0	0	1	0	0	0	11052	826	29	4	532	4	OR4C11	11	55371448	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	7552038	55371448	79635068	38	26361											
DDX47	51202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12974592	12974592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	12974592	T	C	12974592	3	2	451	1	0	0	0	0	1	0	0	0	4367	1696	59	3	388	3	DDX47	12	12974592	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		12974592	120877303	39	26362											
ANP32D	23519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48866684	48866684	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	48866684	C	T	48866684	2	4	451	1	0	0	0	0	0	0	0	1	708	726	26	2		2	ANP32D	12	48866684	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	35892092	48866684	84985211	40	26363											
TDG	6996	broad.mit.edu	37	12	104380795	104380795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	104380795	C	T	104380795	3	4	451	1	0	0	0	0	1	0	0	0	15737	838	29	2	1198	2	TDG	12	104380795	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	55514111	104380795	29471100	41	26364											
KLF12	11278	hgsc.bcm.edu	37	13	74420188	74420188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	74420188	A	G	74420188	3	3	451	1	0	0	0	0	1	0	0	0	8347	159	6	3	782	3	KLF12	13	74420188	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08		74420188	40749690	42	26365											
CHD8	57680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21862522	21862522	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	21862522	T	-	21862522	7	5	451	1	0	1	0	1	0	0	0	0	3333	1609	56	0	2264	0	CHD8	14	21862522	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08		21862522	85487018	43	26366											
FBXO34	55030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55818351	55818351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	55818351	C	G	55818351	3	3	451	1	0	0	0	0	1	0	0	0	5751	507	18	4	1245	4	FBXO34	14	55818351	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	33955829	55818351	51531189	44	26367											
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95562982	95562982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	95562982	C	A	95562982	3	1	451	1	0	0	0	0	1	0	0	0	4523	912	32	4	1513	4	DICER1	14	95562982	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	39744631	95562982	11786558	45	26368											
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1552985	1552985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	1552985	G	T	1552985	3	4	451	1	0	0	0	0	1	0	0	0	15769	962	34	4	1878	4	TELO2	16	1552985	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		1552985	88801768	46	26369											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58580300	58580300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	58580300	T	G	58580300	3	3	451	1	0	0	0	0	1	0	0	0	3619	1783	62	5	3505	5	CNOT1	16	58580300	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	57027315	58580300	31774453	47	26370											
NFATC3	4775	broad.mit.edu	37	16	68200904	68200904	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	68200904	T	-	68200904	7	5	451	1	0	1	0	1	0	0	0	0	10371	1406	49	0	1778	0	NFATC3	16	68200904	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08	9620604	68200904	22153849	48	26371											
SF3B3	23450	broad.mit.edu	37	16	70563043	70563043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	70563043	G	A	70563043	3	1	451	1	0	0	0	0	1	0	0	0	14165	1145	40	1	344	1	SF3B3	16	70563043	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	2362139	70563043	19791710	49	26372											
MLKL	197259	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74729257	74729257	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	74729257	C	G	74729257	3	3	451	1	0	0	0	0	1	0	0	0	9626	624	22	4	1087	4	MLKL	16	74729257	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	4166214	74729257	15625496	50	26373											
ZNF778	197320	broad.mit.edu	37	16	89288533	89288533	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	89288533	A	T	89288533	3	4	451	1	0	0	0	0	1	0	0	0	18163	217	8	5	65	5	ZNF778	16	89288533	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	14559276	89288533	1066220	51	26374											
SERPINF1	5176	broad.mit.edu	37	17	1673260	1673260	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	1673260	C	A	1673260	2	1	451	1	0	0	0	0	0	0	0	1	14127	643	23	4		4	SERPINF1	17	1673260	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		1673260	79521950	52	26375											
SLC13A5	284111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6597517	6597517	+	Splice_Site	SNP	C	C	G	rs113208940	bycluster	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	6597517	C	G	6597517	5	3	451	1	0	0	0	0	0	0	1	0	14408	695	24	4	671	4	SLC13A5	17	6597517	Splice_Site	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	4924257	6597517	74597693	53	26376											
GAS7	8522	broad.mit.edu;bcgsc.ca	37	17	9846496	9846496	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	9846496	G	A	9846496	4	1	451	1	0	0	0	0	0	1	0	0	6257	1357	47	2	789	2	GAS7	17	9846496	Nonsense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	3248979	9846496	71348714	54	26377											
MYO1D	4642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30932193	30932193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	30932193	C	T	30932193	3	4	451	1	0	0	0	0	1	0	0	0	10078	913	32	2	252	2	MYO1D	17	30932193	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	21085697	30932193	50263017	55	26378											
ERBB2	2064	broad.mit.edu	37	17	37883164	37883164	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	37883164	T	-	37883164	7	5	451	1	0	1	0	1	0	0	0	0	5208	1638	57	0	3165	0	ERBB2	17	37883164	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08	6950971	37883164	43312046	56	26379											
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42289818	42289818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	42289818	G	C	42289818	3	2	451	1	0	0	0	0	1	0	0	0	16921	1029	36	4	1685	4	UBTF	17	42289818	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	4406654	42289818	38905392	57	26380											
MRPL10	124995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45901623	45901623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	45901623	G	A	45901623	3	1	451	1	0	0	0	0	1	0	0	0	9782	942	33	2	55	2	MRPL10	17	45901623	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	3611805	45901623	35293587	58	26381											
GGA3	23163	broad.mit.edu	37	17	73237524	73237524	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	73237524	G	T	73237524	2	4	451	1	0	0	0	0	0	0	0	1	6361	1277	45	4		4	GGA3	17	73237524	Silent	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	27335901	73237524	7957686	59	26382											
SERPINB10	5273	broad.mit.edu	37	18	61584738	61584739	+	Frame_Shift_Ins	INS	-	-	A	rs201620640		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	61584739	-	A	61584738	7	5	451	1	0	1	1	0	0	0	0	0	14110	1291	45	0	223	0	SERPINB10	18	61584738	Frame_Shift_Ins	INS	-	TCGA-BQ-5892-01A-11D-1589-08		61584738	16492510	60	26383											
SHC2	25759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	422226	422226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	422226	T	C	422226	3	2	451	1	0	0	0	0	1	0	0	0	14284	1696	59	3	216	3	SHC2	19	422226	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		422226	58706757	61	26384											
LRRC8E	80131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	7960603	7960603	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	7960603	G	-	7960603	7	5	451	1	0	1	0	1	0	0	0	0	9032	1348	47	0	117	0	LRRC8E	19	7960603	Frame_Shift_Del	DEL	G	TCGA-BQ-5892-01A-11D-1589-08	7538377	7960603	51168380	62	26385											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9046479	9046479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	9046479	C	G	9046479	3	3	451	1	0	0	0	0	1	0	0	0	9980	478	17	4	8691	4	MUC16	19	9046479	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	1085876	9046479	50082504	63	26386											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9085838	9085838	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	9085838	C	A	9085838	4	1	451	1	0	0	0	0	0	1	0	0	9980	922	32	4	37882	4	MUC16	19	9085838	Nonsense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	39359	9085838	50043145	64	26387											
ZNF44	51710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12384693	12384693	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	12384693	G	C	12384693	3	2	451	1	0	0	0	0	1	0	0	0	17924	1029	36	4	1474	4	ZNF44	19	12384693	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	3298855	12384693	46744290	65	26388											
CALR	811	broad.mit.edu	37	19	13054650	13054658	+	In_Frame_Del	DEL	GAGGATGAG	GAGGATGAG	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GAGGATGAG	GAGGATGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	13054658	GAGGATGAG	-	13054650	7	5	451	1	0	1	0	1	0	0	0	0	2594	1291	45	0	1211	0	CALR	19	13054650	In_Frame_Del	DEL	GAGGATGAG	TCGA-BQ-5892-01A-11D-1589-08	669957	13054650	46074333	66	26389											
ZNF208	7757	broad.mit.edu;bcgsc.ca	37	19	22157487	22157487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	22157487	A	T	22157487	3	4	451	1	0	0	0	0	1	0	0	0	17778	362	13	5	3497	5	ZNF208	19	22157487	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	9102837	22157487	36971496	67	26390											
MAP4K1	11184	hgsc.bcm.edu	37	19	39096057	39096057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	39096057	T	C	39096057	3	2	451	1	0	0	0	0	1	0	0	0	9266	1792	62	3	1181	3	MAP4K1	19	39096057	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	16938570	39096057	20032926	68	26391											
ZNF225	7768	broad.mit.edu	37	19	44636328	44636328	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	44636328	T	-	44636328	7	5	451	1	0	1	0	1	0	0	0	0	17791	1493	52	0	1575	0	ZNF225	19	44636328	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08	5540271	44636328	14492655	69	26392											
ZNF544	27300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58774085	58774085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	A	58774085	G	A	58774085	3	1	451	1	0	0	0	0	1	0	0	0	17989	1029	36	2	2127	2	ZNF544	19	58774085	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	14137757	58774085	354898	70	26393											
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	10625851	10625851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	10625851	C	T	10625851	3	4	451	1	0	0	0	0	1	0	0	0	7941	835	29	2	1529	2	JAG1	20	10625851	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		10625851	52399669	71	26394											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34064377	34064378	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	34064378	-	T	34064377	7	5	451	1	0	1	1	0	0	0	0	0	3254	797	28	0	1870	0	CEP250	20	34064377	Frame_Shift_Ins	INS	-	TCGA-BQ-5892-01A-11D-1589-08	23438526	34064377	28961143	72	26395											
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34918555	34918555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	34918555	T	G	34918555	3	3	451	1	0	0	0	0	1	0	0	0	14939	1403	49	5	120	5	SON	21	34918555	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		34918555	13211340	73	26396											
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34922861	34922861	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	34922861	T	G	34922861	3	3	451	1	0	0	0	0	1	0	0	0	14939	1551	54	5	1334	5	SON	21	34922861	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	4306	34922861	13207034	74	26397											
PRMT2	3275	hgsc.bcm.edu;broad.mit.edu	37	21	48056904	48056905	+	Splice_Site	INS	-	-	AA	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	AA	48056905	-	AA	48056904	8	5	451	1	0	1	1	0	0	0	1	0	12547	1652	57	0	43	0	PRMT2	21	48056904	Splice_Site	INS	-	TCGA-BQ-5892-01A-11D-1589-08	13134043	48056904	72991	75	26398											
UBE2L3	7332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21975858	21975858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	C	21975858	G	C	21975858	3	2	451	1	0	0	0	0	1	0	0	0	16875	1116	39	4	379	4	UBE2L3	22	21975858	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		21975858	29328708	76	26399											
LIMK2	3985	broad.mit.edu	37	22	31667152	31667152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	31667152	C	T	31667152	3	4	451	1	0	0	0	0	1	0	0	0	8809	643	23	1	1451	1	LIMK2	22	31667152	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	9691294	31667152	19637414	77	26400											
NUP50	10762	hgsc.bcm.edu	37	22	45574342	45574342	+	Silent	SNP	A	A	G	rs13209197		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	G	45574342	A	G	45574342	2	3	451	1	0	0	0	0	0	0	0	1	10773	69	3	3		3	NUP50	22	45574342	Silent	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	13907190	45574342	5730224	78	26401											
ATXN3L	92552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	13337247	13337248	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	-	13337248	TG	-	13337247	7	5	451	1	0	1	0	1	0	0	0	0	1214	1451	51	0	264	0	ATXN3L	23	13337247	Frame_Shift_Del	DEL	TG	TCGA-BQ-5892-01A-11D-1589-08		13337247	141933313	79	26402											
UTP14A	10813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	129045744	129045744	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	T	129045744	C	T	129045744	2	4	451	1	0	0	0	0	0	0	0	1	17107	845	30	2		2	UTP14A	23	129045744	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	115708497	129045744	26224816	80	26403											
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65344759	65344759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	65344759	C	T	65344759	3	4	452	1	0	0	0	0	1	0	0	0	7944	768	27	1	3274	1	JAK1	1	65344759	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		65344759	183905862	1	26404											
ARHGAP29	9411	bcgsc.ca	37	1	94696978	94696978	+	Missense_Mutation	SNP	C	C	T	rs200189126		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	94696978	C	T	94696978	3	4	452	1	0	0	0	0	1	0	0	0	878	922	32	2	3683	2	ARHGAP29	1	94696978	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	29352219	94696978	154553643	2	26405											
SNX7	51375	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99150445	99150445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	99150445	C	A	99150445	3	1	452	1	0	0	0	0	1	0	0	0	14920	739	26	4	191	4	SNX7	1	99150445	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	4453467	99150445	150100176	3	26406											
ANKRD35	148741	bcgsc.ca	37	1	145560900	145560900	+	Missense_Mutation	SNP	G	G	A	rs202165652		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	145560900	G	A	145560900	3	1	452	1	0	0	0	0	1	0	0	0	664	1029	36	2	791	2	ANKRD35	1	145560900	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	46410455	145560900	103689721	4	26407											
NTRK1	4914	broad.mit.edu	37	1	156837966	156837966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	156837966	C	A	156837966	3	1	452	1	0	0	0	0	1	0	0	0	10713	564	20	4	647	4	NTRK1	1	156837966	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	11277066	156837966	92412655	5	26408											
FCGR2A	2212	bcgsc.ca	37	1	161480669	161480669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	161480669	T	G	161480669	3	3	452	1	0	0	0	0	1	0	0	0	5788	1696	59	5	683	5	FCGR2A	1	161480669	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	4642703	161480669	87769952	6	26409											
PTGS2	5743	hgsc.bcm.edu	37	1	186649374	186649374	+	Missense_Mutation	SNP	T	T	C	rs199946406		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	186649374	T	C	186649374	3	2	452	1	0	0	0	0	1	0	0	0	12767	1638	57	3	1805	3	PTGS2	1	186649374	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	25168705	186649374	62601247	7	26410											
AKT3	10000	hgsc.bcm.edu	37	1	243668589	243668589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	243668589	A	G	243668589	3	3	452	1	0	0	0	0	1	0	0	0	481	14	1	3	89	3	AKT3	1	243668589	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	57019215	243668589	5582032	8	26411											
OR13G1	441933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247835611	247835611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	247835611	C	G	247835611	3	3	452	1	0	0	0	0	1	0	0	0	10949	507	18	4	194	4	OR13G1	1	247835611	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	4167022	247835611	1415010	9	26412											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	178936091	G	A	178936091	3	1	452	1	0	0	0	0	1	0	0	0	11920	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		178936091	19086339	10	26413											
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79531260	79531260	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	79531260	A	T	79531260	2	4	452	1	0	0	0	0	0	0	0	1	719	291	11	5		5	ANXA3	4	79531260	Silent	SNP	A	TCGA-BQ-5893-01A-11D-1589-08		79531260	111623016	11	26414											
GAB1	2549	hgsc.bcm.edu	37	4	144354854	144354854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	144354854	A	G	144354854	3	3	452	1	0	0	0	0	1	0	0	0	6155	72	3	3	588	3	GAB1	4	144354854	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	64823594	144354854	46799422	12	26415											
CCNB1	891	bcgsc.ca	37	5	68470159	68470159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	68470159	G	A	68470159	3	1	452	1	0	0	0	0	1	0	0	0	2913	1029	36	2	646	2	CCNB1	5	68470159	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		68470159	112445101	13	26416											
COL4A3BP	10087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	74712823	74712828	+	In_Frame_Del	DEL	TACCAT	TACCAT	-	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	TACCAT	TACCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	-	74712828	TACCAT	-	74712823	7	5	452	1	0	1	0	1	0	0	0	0	3694	1406	49	0	1203	0	COL4A3BP	5	74712823	In_Frame_Del	DEL	TACCAT	TCGA-BQ-5893-01A-11D-1589-08	6242664	74712823	106202437	14	26417											
PCDHB2	56133	hgsc.bcm.edu	37	5	140476195	140476195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	140476195	G	T	140476195	3	4	452	1	0	0	0	0	1	0	0	0	11549	962	34	4	1823	4	PCDHB2	5	140476195	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	65763372	140476195	40439065	15	26418											
PCDHB3	56132	bcgsc.ca	37	5	140481333	140481333	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	140481333	T	G	140481333	3	3	452	1	0	0	0	0	1	0	0	0	11550	1725	60	5	1102	5	PCDHB3	5	140481333	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	5138	140481333	40433927	16	26419											
PCDHB5	26167	broad.mit.edu	37	5	140517124	140517124	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	140517124	C	G	140517124	3	3	452	1	0	0	0	0	1	0	0	0	11552	893	31	4	2110	4	PCDHB5	5	140517124	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	35791	140517124	40398136	17	26420											
LARS	51520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145533344	145533344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	145533344	C	T	145533344	3	4	452	1	0	0	0	0	1	0	0	0	8641	884	31	1	2431	1	LARS	5	145533344	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	5016220	145533344	35381916	18	26421											
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	148730749	148730749	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	148730749	C	T	148730749	2	4	452	1	0	0	0	0	0	0	0	1	6814	639	23	1		1	GRPEL2	5	148730749	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	3197405	148730749	32184511	19	26422											
HLA-G	3135	ucsc.edu	37	6	29797247	29797247	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	29797247	C	T	29797247	2	4	452	1	0	0	0	0	0	0	0	1	7219	610	22	2		2	HLA-G	6	29797247	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		29797247	141317820	20	26423											
CCDC28A	25901	bcgsc.ca	37	6	139106480	139106480	+	Missense_Mutation	SNP	A	A	C	rs77141562		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	139106480	A	C	139106480	3	2	452	1	0	0	0	0	1	0	0	0	2804	43	2	5	723	5	CCDC28A	6	139106480	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	109309233	139106480	32008587	21	26424											
HIVEP2	3097	broad.mit.edu	37	6	143090729	143090729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	143090729	C	T	143090729	3	4	452	1	0	0	0	0	1	0	0	0	7194	739	26	2	2217	2	HIVEP2	6	143090729	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	3984249	143090729	28024338	22	26425											
SAMD5	389432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	147830100	147830100	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	147830100	G	A	147830100	2	1	452	1	0	0	0	0	0	0	0	1	13836	1074	38	1		1	SAMD5	6	147830100	Silent	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	4739371	147830100	23284967	23	26426											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47970797	47970797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	47970797	G	A	47970797	3	1	452	1	0	0	0	0	1	0	0	0	11971	1145	40	1	8116	1	PKD1L1	7	47970797	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		47970797	111167866	24	26427											
TPK1	27010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	144245631	144245631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	144245631	C	A	144245631	3	1	452	1	0	0	0	0	1	0	0	0	16416	855	30	4	173	4	TPK1	7	144245631	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	96274834	144245631	14893032	25	26428											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151845739	151845739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	151845739	C	A	151845739	3	1	452	1	0	0	0	0	1	0	0	0	9629	855	30	4	1494	4	MLL3	7	151845739	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	7600108	151845739	7292924	26	26429											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2044224	2044224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	2044224	A	G	2044224	3	3	452	1	0	0	0	0	1	0	0	0	10099	363	13	3	2329	3	MYOM2	8	2044224	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08		2044224	144319798	27	26430											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25766022	25766022	+	Missense_Mutation	SNP	C	C	A	rs200594181		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	25766022	C	A	25766022	3	1	452	1	0	0	0	0	1	0	0	0	4883	797	28	4	1166	4	EBF2	8	25766022	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	23721798	25766022	120598000	28	26431											
FAM110B	90362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	59059734	59059734	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	59059734	C	T	59059734	2	4	452	1	0	0	0	0	0	0	0	1	5401	796	28	2		2	FAM110B	8	59059734	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	33293712	59059734	87304288	29	26432											
MYBL1	4603	broad.mit.edu;bcgsc.ca	37	8	67477040	67477040	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	67477040	T	A	67477040	2	1	452	1	0	0	0	0	0	0	0	1	10016	1567	55	5		5	MYBL1	8	67477040	Silent	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	8417306	67477040	78886982	30	26433											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113249531	113249531	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	113249531	G	T	113249531	4	4	452	1	0	0	0	0	0	1	0	0	3948	1372	48	4	628	4	CSMD3	8	113249531	Nonsense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	45772491	113249531	33114491	31	26434			1	53		2	2	36	N	G_C	8.592268e-05
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113249566	113249566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	113249566	C	A	113249566	3	1	452	1	0	0	0	0	1	0	0	0	3948	478	17	4	663	4	CSMD3	8	113249566	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	35	113249566	33114456	32	26435			1	53		2	2	36	N	G_C	8.592268e-05
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	142186773	142186773	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	142186773	C	T	142186773	2	4	452	1	0	0	0	0	0	0	0	1	4434	883	31	1		1	DENND3	8	142186773	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	28937207	142186773	4177249	33	26436											
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144809117	144809117	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	144809117	G	C	144809117	2	2	452	1	0	0	0	0	0	0	0	1	5647	1219	43	4		4	FAM83H	8	144809117	Silent	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	2622344	144809117	1554905	34	26437											
SMARCA2	6595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	2110312	2110312	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	2110312	C	T	2110312	2	4	452	1	0	0	0	0	0	0	0	1	14782	610	22	2		2	SMARCA2	9	2110312	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		2110312	139103119	35	26438											
MELK	9833	bcgsc.ca	37	9	36651842	36651842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	36651842	C	A	36651842	3	1	452	1	0	0	0	0	1	0	0	0	9477	479	17	4	1063	4	MELK	9	36651842	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	34541530	36651842	104561589	36	26439											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113141740	113141740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	113141740	T	C	113141740	3	2	452	1	0	0	0	0	1	0	0	0	15432	1406	49	3	440	3	SVEP1	9	113141740	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	76489898	113141740	28071691	37	26440											
OR1B1	347169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125391500	125391500	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	125391500	G	A	125391500	2	1	452	1	0	0	0	0	0	0	0	1	10958	933	33	2		2	OR1B1	9	125391500	Silent	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	12249760	125391500	15821931	38	26441											
PIP4K2A	5305	bcgsc.ca	37	10	22856802	22856802	+	Missense_Mutation	SNP	C	C	T	rs201266267		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	22856802	C	T	22856802	3	4	452	1	0	0	0	0	1	0	0	0	11943	913	32	2	584	2	PIP4K2A	10	22856802	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		22856802	112677945	39	26442											
SVIL	6840	bcgsc.ca	37	10	29813511	29813511	+	Missense_Mutation	SNP	A	A	G	rs201719880		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	29813511	A	G	29813511	3	3	452	1	0	0	0	0	1	0	0	0	15433	275	10	3	4268	3	SVIL	10	29813511	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	6956709	29813511	105721236	40	26443											
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	45799786	45799786	+	Missense_Mutation	SNP	C	C	T	rs200530280	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	45799786	C	T	45799786	3	4	452	1	0	0	0	0	1	0	0	0	10940	893	31	1	905	1	OR13A1	10	45799786	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	15986275	45799786	89734961	41	26444											
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72517740	72517740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	72517740	G	T	72517740	3	4	452	1	0	0	0	0	1	0	0	0	259	1203	42	4	3047	4	ADAMTS14	10	72517740	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	26717954	72517740	63017007	42	26445											
MUC2	4583	hgsc.bcm.edu	37	11	1092966	1092966	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	1092966	C	A	1092966	2	1	452	1	0	0	0	0	0	0	0	1	9982	610	22	4		4	MUC2	11	1092966	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		1092966	133913550	43	26446											
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	7618800	7618800	+	Missense_Mutation	SNP	C	C	G	rs17851928	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	7618800	C	G	7618800	3	3	452	1	0	0	0	0	1	0	0	0	12321	681	24	4	396	4	PPFIBP2	11	7618800	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	6525834	7618800	127387716	44	26447											
TTC17	55761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	43380551	43380551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	43380551	G	A	43380551	3	1	452	1	0	0	0	0	1	0	0	0	16696	1319	46	2	49	2	TTC17	11	43380551	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	35761751	43380551	91625965	45	26448											
PICALM	8301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	85714416	85714416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	85714416	C	A	85714416	3	1	452	1	0	0	0	0	1	0	0	0	11887	710	25	4	1148	4	PICALM	11	85714416	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	42333865	85714416	49292100	46	26449											
USP28	57646	broad.mit.edu	37	11	113679909	113679909	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	113679909	G	T	113679909	4	4	452	1	0	0	0	0	0	1	0	0	17070	1372	48	4	1229	4	USP28	11	113679909	Nonsense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	27965493	113679909	21326607	47	26450											
OR8G2	26492	broad.mit.edu	37	11	124095997	124095997	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	124095997	C	A	124095997	2	1	452	1	0	0	0	0	0	0	0	1	11242	900	32	4		4	OR8G2	11	124095997	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	10416088	124095997	10910519	48	26451											
TXNRD1	7296	broad.mit.edu;bcgsc.ca	37	12	104721450	104721453	+	Splice_Site	DEL	GTGA	GTGA	-	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	GTGA	GTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	-	104721453	GTGA	-	104721450	8	5	452	1	0	1	0	1	0	0	1	0	16819	1275	44	0	1607	0	TXNRD1	12	104721450	Splice_Site	DEL	GTGA	TCGA-BQ-5893-01A-11D-1589-08		104721450	29130445	49	26452											
ZCCHC8	55596	bcgsc.ca	37	12	122958214	122958214	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	122958214	T	G	122958214	3	3	452	1	0	0	0	0	1	0	0	0	17606	1725	60	5	173	5	ZCCHC8	12	122958214	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	18236764	122958214	10893681	50	26453											
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	24825881	24825881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	24825881	C	A	24825881	3	1	452	1	0	0	0	0	1	0	0	0	15012	797	28	4	2055	4	SPATA13	13	24825881	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		24825881	90343997	51	26454											
SHISA2	387914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	26620708	26620708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	26620708	C	G	26620708	3	3	452	1	0	0	0	0	1	0	0	0	14293	564	20	4	60	4	SHISA2	13	26620708	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	1794827	26620708	88549170	52	26455											
TTBK2	146057	bcgsc.ca	37	15	43132600	43132600	+	Missense_Mutation	SNP	A	A	C	rs141523080		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	43132600	A	C	43132600	3	2	452	1	0	0	0	0	1	0	0	0	16689	157	6	5	3533	5	TTBK2	15	43132600	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08		43132600	59398792	53	26456											
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65983020	65983020	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	65983020	C	T	65983020	2	4	452	1	0	0	0	0	0	0	0	1	4435	813	29	2		2	DENND4A	15	65983020	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	22850420	65983020	36548372	54	26457											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75692465	75692465	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	75692465	C	T	75692465	2	4	452	1	0	0	0	0	0	0	0	1	14338	523	19	1		1	SIN3A	15	75692465	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	9709445	75692465	26838927	55	26458											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	2059674	T	C	2059674	3	2	452	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08		2059674	88295079	56	26459											
PKD1	5310	broad.mit.edu	37	16	2142592	2142592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	2142592	A	C	2142592	3	2	452	1	0	0	0	0	1	0	0	0	11970	289	10	5	1785	5	PKD1	16	2142592	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	82918	2142592	88212161	57	26460											
NLRC3	197358	hgsc.bcm.edu	37	16	3613197	3613197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	3613197	G	A	3613197	3	1	452	1	0	0	0	0	1	0	0	0	10475	1116	39	1	1521	1	NLRC3	16	3613197	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	1470605	3613197	86741556	58	26461											
CIITA	4261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	10992850	10992850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	10992850	C	A	10992850	3	1	452	1	0	0	0	0	1	0	0	0	3430	827	29	4	445	4	CIITA	16	10992850	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	7379653	10992850	79361903	59	26462											
B3GNT9	84752	hgsc.bcm.edu	37	16	67184342	67184342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	67184342	A	G	67184342	3	3	452	1	0	0	0	0	1	0	0	0	1264	304	11	3	1165	3	B3GNT9	16	67184342	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	56191492	67184342	23170411	60	26463											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89349917	89349917	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	89349917	C	G	89349917	3	3	452	1	0	0	0	0	1	0	0	0	639	912	32	4	4978	4	ANKRD11	16	89349917	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	22165575	89349917	1004836	61	26464											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18082124	18082124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	18082124	C	A	18082124	3	1	452	1	0	0	0	0	1	0	0	0	10070	506	18	4	10787	4	MYO15A	17	18082124	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		18082124	63113086	62	26465											
KIAA1468	57614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	59888685	59888685	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	59888685	C	T	59888685	2	4	452	1	0	0	0	0	0	0	0	1	8243	564	20	2		2	KIAA1468	18	59888685	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		59888685	18188563	63	26466											
RHPN2	85415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	33503622	33503622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	33503622	G	C	33503622	3	2	452	1	0	0	0	0	1	0	0	0	13364	1164	41	4	1705	4	RHPN2	19	33503622	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		33503622	25625361	64	26467											
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34832921	34832921	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	34832921	G	A	34832921	2	1	452	1	0	0	0	0	0	0	0	1	8177	1306	46	2		2	KIAA0355	19	34832921	Silent	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	1329299	34832921	24296062	65	26468											
CNFN	84518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42893120	42893120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	G	42893120	A	G	42893120	3	3	452	1	0	0	0	0	1	0	0	0	3597	188	7	3	280	3	CNFN	19	42893120	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	8060199	42893120	16235863	66	26469											
ZNF285	26974	bcgsc.ca	37	19	44896602	44896602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	44896602	A	C	44896602	3	2	452	1	0	0	0	0	1	0	0	0	17834	43	2	5	1736	5	ZNF285	19	44896602	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	2003482	44896602	14232381	67	26470											
DMPK	1760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46280763	46280763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	46280763	G	A	46280763	3	1	452	1	0	0	0	0	1	0	0	0	4586	1377	48	2	960	2	DMPK	19	46280763	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	1384161	46280763	12848220	68	26471											
VN1R2	317701	broad.mit.edu	37	19	53762720	53762720	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	53762720	T	C	53762720	2	2	452	1	0	0	0	0	0	0	0	1	17191	1596	56	3		3	VN1R2	19	53762720	Silent	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	7481957	53762720	5366263	69	26472											
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54385815	54385815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	T	54385815	G	T	54385815	3	4	452	1	0	0	0	0	1	0	0	0	12522	1232	43	4	69	4	PRKCG	19	54385815	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	623095	54385815	4743168	70	26473											
KIR3DL3	115653	hgsc.bcm.edu	37	19	55239373	55239373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	55239373	G	A	55239373	3	1	452	1	0	0	0	0	1	0	0	0	8329	1145	40	1	666	1	KIR3DL3	19	55239373	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	853558	55239373	3889610	71	26474											
SAMHD1	25939	hgsc.bcm.edu	37	20	35563508	35563508	+	Missense_Mutation	SNP	G	G	C	rs121434517	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	C	35563508	G	C	35563508	3	2	452	1	0	0	0	0	1	0	0	0	13841	1066	37	4	1499	4	SAMHD1	20	35563508	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		35563508	27462012	72	26475											
EIF1AX	1964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20152121	20152121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	20152121	C	A	20152121	3	1	452	1	0	0	0	0	1	0	0	0	4994	595	21	4	241	4	EIF1AX	23	20152121	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		20152121	135118439	73	26476											
GPR34	2857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41555435	41555435	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	41555435	T	A	41555435	2	1	452	1	0	0	0	0	0	0	0	1	6696	1799	63	5		5	GPR34	23	41555435	Silent	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	21403314	41555435	113715125	74	26477											
GPRASP1	9737	broad.mit.edu	37	X	101908967	101908967	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	A	101908967	C	A	101908967	2	1	452	1	0	0	0	0	0	0	0	1	6729	610	22	4		4	GPRASP1	23	101908967	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	60353532	101908967	53361593	75	26478											
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	129173153	129173154	+	Frame_Shift_Ins	INS	-	-	CTGG	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	CTGG	129173154	-	CTGG	129173153	7	5	452	1	0	1	1	0	0	0	0	0	1387	1435	50	0	4774	0	BCORL1	23	129173153	Frame_Shift_Ins	INS	-	TCGA-BQ-5893-01A-11D-1589-08	27264186	129173153	26097407	76	26479											
CELSR2	1952	hgsc.bcm.edu	37	1	109801211	109801211	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	109801211	G	C	109801211	2	2	453	1	0	0	0	0	0	0	0	1	3224	1074	38	4		4	CELSR2	1	109801211	Silent	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		109801211	139449410	1	26480											
DUSP12	11266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161726704	161726704	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	-	161726704	G	-	161726704	7	5	453	1	0	1	0	1	0	0	0	0	4814	1310	46	0	1012	0	DUSP12	1	161726704	Frame_Shift_Del	DEL	G	TCGA-BQ-5894-01A-11D-1589-08	51925493	161726704	87523917	2	26481											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208270156	208270156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	208270156	C	A	208270156	3	1	453	1	0	0	0	0	1	0	0	0	12127	507	18	4	3984	4	PLXNA2	1	208270156	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	46543452	208270156	40980465	3	26482											
PNPT1	87178	broad.mit.edu	37	2	55900121	55900121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	55900121	C	T	55900121	3	4	453	1	0	0	0	0	1	0	0	0	12180	739	26	2	1658	2	PNPT1	2	55900121	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		55900121	187299252	4	26483											
ANKRD23	200539	hgsc.bcm.edu;broad.mit.edu	37	2	97505559	97505559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	97505559	C	T	97505559	3	4	453	1	0	0	0	0	1	0	0	0	652	681	24	2	198	2	ANKRD23	2	97505559	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	41605438	97505559	145693814	5	26484											
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	149226038	149226038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	149226038	A	G	149226038	3	3	453	1	0	0	0	0	1	0	0	0	9354	14	1	3	540	3	MBD5	2	149226038	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	51720479	149226038	93973335	6	26485											
CYTIP	9595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	158287080	158287080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	158287080	T	C	158287080	3	2	453	1	0	0	0	0	1	0	0	0	4209	1725	60	3	628	3	CYTIP	2	158287080	Missense_Mutation	SNP	T	TCGA-BQ-5894-01A-11D-1589-08	9061042	158287080	84912293	7	26486											
SCN1A	6323	broad.mit.edu	37	2	166866330	166866330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	166866330	C	T	166866330	3	4	453	1	0	0	0	0	1	0	0	0	13927	797	28	2	2156	2	SCN1A	2	166866330	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	8579250	166866330	76333043	8	26487											
ARMC8	25852	hgsc.bcm.edu	37	3	137986077	137986077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	137986077	C	G	137986077	3	3	453	1	0	0	0	0	1	0	0	0	957	709	25	4	1462	4	ARMC8	3	137986077	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		137986077	60036353	9	26488											
KIAA1211	57482	hgsc.bcm.edu	37	4	57180739	57180739	+	Missense_Mutation	SNP	G	G	C	rs112530577		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	57180739	G	C	57180739	3	2	453	1	0	0	0	0	1	0	0	0	8222	962	34	4	1089	4	KIAA1211	4	57180739	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		57180739	133973537	10	26489											
FBXW7	55294	broad.mit.edu	37	4	153268165	153268165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	153268165	C	T	153268165	3	4	453	1	0	0	0	0	1	0	0	0	5776	797	28	2	1516	2	FBXW7	4	153268165	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	96087426	153268165	37886111	11	26490											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32108131	32108131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	32108131	A	G	32108131	3	3	453	1	0	0	0	0	1	0	0	0	11708	362	13	3	8504	3	PDZD2	5	32108131	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08		32108131	148807129	12	26491											
SLIT3	6586	hgsc.bcm.edu	37	5	168098301	168098301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	168098301	G	C	168098301	3	2	453	1	0	0	0	0	1	0	0	0	14754	1195	42	4	554	4	SLIT3	5	168098301	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	135990170	168098301	12816959	13	26492											
GMDS	2762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	1930387	1930387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	1930387	C	T	1930387	3	4	453	1	0	0	0	0	1	0	0	0	6493	632	22	2	417	2	GMDS	6	1930387	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		1930387	169184680	14	26493											
MEP1A	4224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46801054	46801054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	46801054	A	G	46801054	3	3	453	1	0	0	0	0	1	0	0	0	9482	304	11	3	1430	3	MEP1A	6	46801054	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	44870667	46801054	124314013	15	26494											
OPN5	221391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	47754339	47754339	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	47754339	C	A	47754339	2	1	453	1	0	0	0	0	0	0	0	1	10890	816	29	4		4	OPN5	6	47754339	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	953285	47754339	123360728	16	26495											
KLHL31	401265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53517013	53517013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	53517013	C	T	53517013	3	4	453	1	0	0	0	0	1	0	0	0	8392	922	32	2	620	2	KLHL31	6	53517013	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	5762674	53517013	117598054	17	26496											
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70639518	70639518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	70639518	G	T	70639518	3	4	453	1	0	0	0	0	1	0	0	0	3678	1290	45	4	610	4	COL19A1	6	70639518	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	17122505	70639518	100475549	18	26497											
STX11	8676	broad.mit.edu	37	6	144507993	144507993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	144507993	C	T	144507993	3	4	453	1	0	0	0	0	1	0	0	0	15349	759	27	1	231	1	STX11	6	144507993	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	73868475	144507993	26607074	19	26498											
SKAP2	8935	bcgsc.ca	37	7	26765601	26765601	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	26765601	G	C	26765601	3	2	453	1	0	0	0	0	1	0	0	0	14369	1377	48	4	500	4	SKAP2	7	26765601	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		26765601	132373062	20	26499											
PTPRZ1	5803	broad.mit.edu	37	7	121652844	121652844	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	121652844	T	C	121652844	2	2	453	1	0	0	0	0	0	0	0	1	12827	1509	53	3		3	PTPRZ1	7	121652844	Silent	SNP	T	TCGA-BQ-5894-01A-11D-1589-08	94887243	121652844	37485819	21	26500											
INSIG1	3638	hgsc.bcm.edu	37	7	155090012	155090012	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	155090012	A	C	155090012	3	2	453	1	0	0	0	0	1	0	0	0	7772	275	10	5	19	5	INSIG1	7	155090012	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	33437168	155090012	4048651	22	26501											
EPPK1	83481	broad.mit.edu	37	8	144940741	144940741	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	144940741	C	T	144940741	2	4	453	1	0	0	0	0	0	0	0	1	5192	639	23	1		1	EPPK1	8	144940741	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		144940741	1423281	23	26502											
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	5922386	5922386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	5922386	T	G	5922386	3	3	453	1	0	0	0	0	1	0	0	0	8277	1522	53	5	2705	5	KIAA2026	9	5922386	Missense_Mutation	SNP	T	TCGA-BQ-5894-01A-11D-1589-08		5922386	135291045	24	26503											
GTF3C5	9328	broad.mit.edu	37	9	135919313	135919313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	135919313	G	A	135919313	3	1	453	1	0	0	0	0	1	0	0	0	6883	1130	39	1	582	1	GTF3C5	9	135919313	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	129996927	135919313	5294118	25	26504											
STAM	8027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17747670	17747670	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	17747670	T	A	17747670	3	1	453	1	0	0	0	0	1	0	0	0	15260	1464	51	5	1185	5	STAM	10	17747670	Missense_Mutation	SNP	T	TCGA-BQ-5894-01A-11D-1589-08		17747670	117787077	26	26505											
C10orf2	56652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102750271	102750271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	102750271	G	T	102750271	3	4	453	1	0	0	0	0	1	0	0	0	1599	1290	45	4	1573	4	C10orf2	10	102750271	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	85002601	102750271	32784476	27	26506											
MUC2	4583	hgsc.bcm.edu	37	11	1092813	1092813	+	Silent	SNP	C	C	T	rs12577898		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	1092813	C	T	1092813	2	4	453	1	0	0	0	0	0	0	0	1	9982	581	21	2		2	MUC2	11	1092813	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		1092813	133913703	28	26507											
OR52N5	390075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5799428	5799428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	5799428	G	T	5799428	3	4	453	1	0	0	0	0	1	0	0	0	11137	1261	44	4	541	4	OR52N5	11	5799428	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	4706615	5799428	129207088	29	26508											
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	44073203	44073203	+	Missense_Mutation	SNP	G	G	T	rs200162550	byfrequency;alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	44073203	G	T	44073203	3	4	453	1	0	0	0	0	1	0	0	0	134	1275	44	4	724	4	ACCSL	11	44073203	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	38273775	44073203	90933313	30	26509											
BUD13	84811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	116633298	116633298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	116633298	A	G	116633298	3	3	453	1	0	0	0	0	1	0	0	0	1575	14	1	3	880	3	BUD13	11	116633298	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	72560095	116633298	18373218	31	26510											
EMG1	10436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7084424	7084424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	7084424	G	A	7084424	3	1	453	1	0	0	0	0	1	0	0	0	5092	1029	36	2	522	2	EMG1	12	7084424	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		7084424	126767471	32	26511											
TDRD3	81550	broad.mit.edu	37	13	61102844	61102844	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	61102844	T	C	61102844	2	2	453	1	0	0	0	0	0	0	0	1	15744	1596	56	3		3	TDRD3	13	61102844	Silent	SNP	T	TCGA-BQ-5894-01A-11D-1589-08		61102844	54067034	33	26512											
ING1	3621	hgsc.bcm.edu	37	13	111371943	111371943	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	111371943	C	G	111371943	3	3	453	1	0	0	0	0	1	0	0	0	7742	535	19	4	1087	4	ING1	13	111371943	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	50269099	111371943	3797935	34	26513											
FITM1	161247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24601751	24601751	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	24601751	G	C	24601751	3	2	453	1	0	0	0	0	1	0	0	0	5905	1175	41	4	604	4	FITM1	14	24601751	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		24601751	82747789	35	26514											
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30507473	30507473	+	Missense_Mutation	SNP	G	G	A	rs199716730		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	30507473	G	A	30507473	3	1	453	1	0	0	0	0	1	0	0	0	7893	1116	39	1	1613	1	ITGAL	16	30507473	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		30507473	59847280	36	26515											
SLC12A3	6559	broad.mit.edu	37	16	56906659	56906659	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	56906659	A	G	56906659	2	3	453	1	0	0	0	0	0	0	0	1	14397	175	7	3		3	SLC12A3	16	56906659	Silent	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	26399186	56906659	33448094	37	26516											
PMFBP1	83449	broad.mit.edu	37	16	72158703	72158703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	72158703	G	A	72158703	3	1	453	1	0	0	0	0	1	0	0	0	12141	1203	42	2	551	2	PMFBP1	16	72158703	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	15252044	72158703	18196050	38	26517											
GPRC5C	55890	broad.mit.edu	37	17	72428210	72428210	+	Silent	SNP	C	C	G	rs138824950	alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	72428210	C	G	72428210	2	3	453	1	0	0	0	0	0	0	0	1	6733	581	21	4		4	GPRC5C	17	72428210	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		72428210	8767000	39	26518											
TRAPPC5	126003	broad.mit.edu	37	19	7747477	7747477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	7747477	G	A	7747477	3	1	453	1	0	0	0	0	1	0	0	0	16474	1087	38	1	340	1	TRAPPC5	19	7747477	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		7747477	51381506	40	26519											
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	C	48945880	T	C	48945880	2	2	453	1	0	0	0	0	0	0	0	1	6789	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-BQ-5894-01A-11D-1589-08	41198403	48945880	10183103	41	26520											
NTN5	126147	hgsc.bcm.edu	37	19	49174237	49174237	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	49174237	C	G	49174237	3	3	453	1	0	0	0	0	1	0	0	0	10710	536	19	4	1486	4	NTN5	19	49174237	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	228357	49174237	9954746	42	26521											
KLK3	354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51359636	51359636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	51359636	G	T	51359636	3	4	453	1	0	0	0	0	1	0	0	0	8412	971	34	4	193	4	KLK3	19	51359636	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	2185399	51359636	7769347	43	26522											
JAG1	182	hgsc.bcm.edu	37	20	10621489	10621489	+	Silent	SNP	C	C	A	rs202075581	alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	10621489	C	A	10621489	2	1	453	1	0	0	0	0	0	0	0	1	7941	755	27	4		4	JAG1	20	10621489	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		10621489	52404031	44	26523											
MAFB	9935	hgsc.bcm.edu	37	20	39316754	39316754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	G	39316754	A	G	39316754	3	3	453	1	0	0	0	0	1	0	0	0	9165	188	7	3	238	3	MAFB	20	39316754	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	28695265	39316754	23708766	45	26524											
PI3	5266	broad.mit.edu	37	20	43804649	43804649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	43804649	G	T	43804649	3	4	453	1	0	0	0	0	1	0	0	0	11877	1319	46	4	233	4	PI3	20	43804649	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	4487895	43804649	19220871	46	26525											
C21orf91	54149	broad.mit.edu	37	21	19190580	19190580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	T	19190580	C	T	19190580	3	4	453	1	0	0	0	0	1	0	0	0	2136	565	20	2	853	2	C21orf91	21	19190580	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		19190580	28939315	47	26526											
PRDM15	63977	hgsc.bcm.edu	37	21	43221684	43221684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	A	43221684	C	A	43221684	3	1	453	1	0	0	0	0	1	0	0	0	12466	536	19	4	287	4	PRDM15	21	43221684	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	24031104	43221684	4908211	48	26527											
NF2	4771	broad.mit.edu	37	22	30000023	30000024	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	-	30000024	CT	-	30000023	7	5	453	1	0	1	0	1	0	0	0	0	10364	796	28	0	38	0	NF2	22	30000023	Frame_Shift_Del	DEL	CT	TCGA-BQ-5894-01A-11D-1589-08		30000023	21304543	49	26528											
KCNJ4	3761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	38823432	38823433	+	In_Frame_Ins	INS	-	-	GGA	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	GGA	38823433	-	GGA	38823432	7	5	453	1	0	1	1	0	0	0	0	0	8060	1203	42	0	635	0	KCNJ4	22	38823432	In_Frame_Ins	INS	-	TCGA-BQ-5894-01A-11D-1589-08	8823409	38823432	12481134	50	26529											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34180229	34180229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	34180229	C	T	34180229	3	4	454	1	0	0	0	0	1	0	0	0	3947	623	22	2	7415	2	CSMD2	1	34180229	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		34180229	215070392	1	26530											
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	78444626	78444626	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	78444626	G	A	78444626	2	1	454	1	0	0	0	0	0	0	0	1	6099	1074	38	1		1	FUBP1	1	78444626	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	44264397	78444626	170805995	2	26531											
ENSA	2029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150601936	150601936	+	Missense_Mutation	SNP	T	T	G	rs148754482	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	150601936	T	G	150601936	3	3	454	1	0	0	0	0	1	0	0	0	5138	1841	64	5	610	5	ENSA	1	150601936	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	72157310	150601936	98648685	3	26532											
HORMAD1	84072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150689613	150689613	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	150689613	C	T	150689613	5	4	454	1	0	0	0	0	0	0	1	0	7293	521	18	2	1057	2	HORMAD1	1	150689613	Splice_Site	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	87677	150689613	98561008	4	26533											
FMO2	2327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171174553	171174553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	171174553	C	A	171174553	3	1	454	1	0	0	0	0	1	0	0	0	5962	477	17	4	985	4	FMO2	1	171174553	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	20484940	171174553	78076068	5	26534											
LAMB3	3914	hgsc.bcm.edu	37	1	209801450	209801450	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	209801450	C	G	209801450	3	3	454	1	0	0	0	0	1	0	0	0	8619	680	24	4	2352	4	LAMB3	1	209801450	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	38626897	209801450	39449171	6	26535											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9515020	9515020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	9515020	G	C	9515020	3	2	454	1	0	0	0	0	1	0	0	0	1011	971	34	4	1759	4	ASAP2	2	9515020	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		9515020	233684353	7	26536											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37235951	37235951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	37235951	G	A	37235951	3	1	454	1	0	0	0	0	1	0	0	0	7039	1294	45	2	1926	2	HEATR5B	2	37235951	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	27720931	37235951	205963422	8	26537											
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	122122716	122122716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	122122716	A	C	122122716	3	2	454	1	0	0	0	0	1	0	0	0	3456	246	9	5	605	5	CLASP1	2	122122716	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	84886765	122122716	121076657	9	26538											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098800	178098800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	178098800	T	C	178098800	3	2	454	1	0	0	0	0	1	0	0	0	10375	1783	62	3	1588	3	NFE2L2	2	178098800	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	55976084	178098800	65100573	10	26539											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179550284	179550284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	179550284	G	A	179550284	3	1	454	1	0	0	0	0	1	0	0	0	16747	1319	46	2	72116	2	TTN	2	179550284	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	1451484	179550284	63649089	11	26540											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216289927	216289927	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	216289927	A	C	216289927	3	2	454	1	0	0	0	0	1	0	0	0	5969	275	10	5	6700	5	FN1	2	216289927	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	36739643	216289927	26909446	12	26541											
GIGYF2	26058	hgsc.bcm.edu	37	2	233712220	233712220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	233712220	A	C	233712220	3	2	454	1	0	0	0	0	1	0	0	0	6385	188	7	5	3791	5	GIGYF2	2	233712220	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	17422293	233712220	9487153	13	26542											
SCN5A	6331	hgsc.bcm.edu;bcgsc.ca	37	3	38645417	38645417	+	Missense_Mutation	SNP	G	G	A	rs199473575		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	38645417	G	A	38645417	3	1	454	1	0	0	0	0	1	0	0	0	13935	1377	48	2	4442	2	SCN5A	3	38645417	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		38645417	159377013	14	26543											
PDZRN3	23024	broad.mit.edu;bcgsc.ca	37	3	73440201	73440201	+	Missense_Mutation	SNP	C	C	T	rs200273452		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	73440201	C	T	73440201	3	4	454	1	0	0	0	0	1	0	0	0	11716	884	31	1	1899	1	PDZRN3	3	73440201	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	34794784	73440201	124582229	15	26544											
ATP2C1	27032	broad.mit.edu;bcgsc.ca	37	3	130673864	130673864	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	130673864	C	T	130673864	2	4	454	1	0	0	0	0	0	0	0	1	1143	813	29	2		2	ATP2C1	3	130673864	Silent	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	57233663	130673864	67348566	16	26545											
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	7857226	7857226	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	7857226	T	G	7857226	3	3	454	1	0	0	0	0	1	0	0	0	353	1551	54	5	2203	5	AFAP1	4	7857226	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08		7857226	183297050	17	26546											
SLC10A4	201780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	48490947	48490948	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	TC	48490948	-	TC	48490947	7	5	454	1	0	1	1	0	0	0	0	0	14389	1596	56	0	1315	0	SLC10A4	4	48490947	Frame_Shift_Ins	INS	-	TCGA-BQ-7044-01A-11D-1961-08	40633721	48490947	142663329	18	26547											
SMARCAD1	56916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	95191935	95191935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	95191935	A	G	95191935	3	3	454	1	0	0	0	0	1	0	0	0	14785	14	1	3	1576	3	SMARCAD1	4	95191935	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	46700988	95191935	95962341	19	26548											
MYO10	4651	ucsc.edu	37	5	16701576	16701576	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	16701576	G	A	16701576	2	1	454	1	0	0	0	0	0	0	0	1	10069	1079	38	1		1	MYO10	5	16701576	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		16701576	164213684	20	26549											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32108145	32108145	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	32108145	G	A	32108145	2	1	454	1	0	0	0	0	0	0	0	1	11708	1335	47	2		2	PDZD2	5	32108145	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	15406569	32108145	148807115	21	26550											
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74872636	74872636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	74872636	A	C	74872636	3	2	454	1	0	0	0	0	1	0	0	0	12211	101	4	5	590	5	POLK	5	74872636	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	42764491	74872636	106042624	22	26551											
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	123983889	123983889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	123983889	A	T	123983889	3	4	454	1	0	0	0	0	1	0	0	0	18046	304	11	5	2374	5	ZNF608	5	123983889	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	49111253	123983889	56931371	23	26552											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179192887	179192887	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	179192887	G	A	179192887	2	1	454	1	0	0	0	0	0	0	0	1	9212	1339	47	2		2	MAML1	5	179192887	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	55208998	179192887	1722373	24	26553											
C6orf226	441150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42858492	42858492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	42858492	G	A	42858492	3	1	454	1	0	0	0	0	1	0	0	0	2361	1116	39	1	274	1	C6orf226	6	42858492	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		42858492	128256575	25	26554											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51917922	51917922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	51917922	C	T	51917922	3	4	454	1	0	0	0	0	1	0	0	0	11978	623	22	2	10359	2	PKHD1	6	51917922	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	9059430	51917922	119197145	26	26555											
CLIP2	7461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73752800	73752800	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	73752800	A	T	73752800	2	4	454	1	0	0	0	0	0	0	0	1	3535	204	8	5		5	CLIP2	7	73752800	Silent	SNP	A	TCGA-BQ-7044-01A-11D-1961-08		73752800	85385863	27	26556											
UFSP1	402682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100486530	100486530	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	-	100486530	G	-	100486530	7	5	454	1	0	1	0	1	0	0	0	0	16949	1335	47	0	69	0	UFSP1	7	100486530	Frame_Shift_Del	DEL	G	TCGA-BQ-7044-01A-11D-1961-08	26733730	100486530	58652133	28	26557											
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132754922	132754922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	132754922	G	A	132754922	3	1	454	1	0	0	0	0	1	0	0	0	3319	942	33	2	562	2	CHCHD3	7	132754922	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	32268392	132754922	26383741	29	26558											
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	133692515	133692515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	133692515	A	G	133692515	3	3	454	1	0	0	0	0	1	0	0	0	5308	411	15	3	2689	3	EXOC4	7	133692515	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	937593	133692515	25446148	30	26559											
KIAA1549	57670	broad.mit.edu;ucsc.edu	37	7	138595898	138595898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	138595898	G	T	138595898	3	4	454	1	0	0	0	0	1	0	0	0	8251	1299	45	4	2781	4	KIAA1549	7	138595898	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	4903383	138595898	20542765	31	26560											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141750617	141750617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	141750617	G	T	141750617	3	4	454	1	0	0	0	0	1	0	0	0	9548	1377	48	4	2848	4	MGAM	7	141750617	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	3154719	141750617	17388046	32	26561											
OR2F1	26211	bcgsc.ca	37	7	143657509	143657509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	143657509	G	T	143657509	3	4	454	1	0	0	0	0	1	0	0	0	11003	1357	47	4	448	4	OR2F1	7	143657509	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	1906892	143657509	15481154	33	26562											
PTPRN2	5799	broad.mit.edu	37	7	157414139	157414139	+	Silent	SNP	G	G	A	rs77143062		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	157414139	G	A	157414139	2	1	454	1	0	0	0	0	0	0	0	1	12821	1079	38	1		1	PTPRN2	7	157414139	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	13756630	157414139	1724524	34	26563											
LZTS1	11178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	20107305	20107305	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	20107305	G	A	20107305	2	1	454	1	0	0	0	0	0	0	0	1	9145	1103	39	1		1	LZTS1	8	20107305	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		20107305	126256717	35	26564											
PPP2R2A	5520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	26227846	26227849	+	Frame_Shift_Del	DEL	CACA	CACA	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CACA	CACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	-	26227849	CACA	-	26227846	7	5	454	1	0	1	0	1	0	0	0	0	12394	826	29	0	1340	0	PPP2R2A	8	26227846	Frame_Shift_Del	DEL	CACA	TCGA-BQ-7044-01A-11D-1961-08	6120541	26227846	120136176	36	26565											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110451259	110451259	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	110451259	G	A	110451259	2	1	454	1	0	0	0	0	0	0	0	1	11979	1020	36	2		2	PKHD1L1	8	110451259	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	84223413	110451259	35912763	37	26566											
RGS3	5998	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116269730	116269730	+	Missense_Mutation	SNP	C	C	T	rs200633658	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	116269730	C	T	116269730	3	4	454	1	0	0	0	0	1	0	0	0	13319	527	19	1	1440	1	RGS3	9	116269730	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		116269730	24943701	38	26567											
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	43315737	G	T	43315737	3	4	454	1	0	0	0	0	1	0	0	0	1472	991	35	4	2692	4	BMS1	10	43315737	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		43315737	92219010	39	26568											
SLC16A9	220963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61413807	61413807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	61413807	A	G	61413807	3	3	454	1	0	0	0	0	1	0	0	0	14428	72	3	3	560	3	SLC16A9	10	61413807	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	18098070	61413807	74120940	40	26569											
PDLIM1	9124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96998413	96998413	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	96998413	T	G	96998413	3	3	454	1	0	0	0	0	1	0	0	0	11686	1609	56	5	282	5	PDLIM1	10	96998413	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	35584606	96998413	38536334	41	26570											
DNMBP	23268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101646325	101646325	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	101646325	G	C	101646325	3	2	454	1	0	0	0	0	1	0	0	0	4676	1232	43	4	1403	4	DNMBP	10	101646325	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	4647912	101646325	33888422	42	26571											
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105750528	105750528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	105750528	A	G	105750528	3	3	454	1	0	0	0	0	1	0	0	0	14761	439	16	3	252	3	SLK	10	105750528	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	4104203	105750528	29784219	43	26572											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1247945	1247945	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	1247945	C	G	1247945	3	3	454	1	0	0	0	0	1	0	0	0	9986	564	20	4	314	4	MUC5B	11	1247945	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		1247945	133758571	44	26573											
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76063689	76063689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	76063689	G	C	76063689	3	2	454	1	0	0	0	0	1	0	0	0	12536	933	33	4	1784	4	PRKRIR	11	76063689	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	74815744	76063689	58942827	45	26574											
MLL2	8085	broad.mit.edu	37	12	49436618	49436618	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	49436618	C	G	49436618	3	3	454	1	0	0	0	0	1	0	0	0	9628	680	24	4	11041	4	MLL2	12	49436618	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		49436618	84415277	46	26575											
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	62959064	62959064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	62959064	A	G	62959064	3	3	454	1	0	0	0	0	1	0	0	0	9707	439	16	3	4186	3	MON2	12	62959064	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	13522446	62959064	70892831	47	26576											
EP400	57634	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132472272	132472272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	132472272	T	A	132472272	3	1	454	1	0	0	0	0	1	0	0	0	5151	1493	52	5	2265	5	EP400	12	132472272	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	69513208	132472272	1379623	48	26577	331	2									
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132472274	132472274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	132472274	G	C	132472274	3	2	454	1	0	0	0	0	1	0	0	0	5151	1319	46	4	2267	4	EP400	12	132472274	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	2	132472274	1379621	49	26578	331	2									
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	28136573	28136575	+	In_Frame_Del	DEL	CCG	CCG	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CCG	CCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	-	28136575	CCG	-	28136573	7	5	454	1	0	1	0	1	0	0	0	0	8873	864	30	0	895	0	LNX2	13	28136573	In_Frame_Del	DEL	CCG	TCGA-BQ-7044-01A-11D-1961-08		28136573	87033305	50	26579	332	2									
LNX2	222484	bcgsc.ca	37	13	28136576	28136576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	28136576	G	A	28136576	3	1	454	1	0	0	0	0	1	0	0	0	8873	1174	41	2	898	2	LNX2	13	28136576	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	3	28136576	87033302	51	26580	332	2									
KBTBD7	84078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41766948	41766948	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	41766948	A	T	41766948	2	4	454	1	0	0	0	0	0	0	0	1	8005	233	9	5		5	KBTBD7	13	41766948	Silent	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	13630372	41766948	73402930	52	26581											
LECT1	11061	ucsc.edu	37	13	53313834	53313834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	53313834	C	T	53313834	3	4	454	1	0	0	0	0	1	0	0	0	8719	826	29	2	1029	2	LECT1	13	53313834	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	11546886	53313834	61856044	53	26582											
DOCK9	23348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99540613	99540613	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	99540613	C	T	99540613	5	4	454	1	0	0	0	0	0	0	1	0	4696	521	18	2	4449	2	DOCK9	13	99540613	Splice_Site	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	46226779	99540613	15629265	54	26583											
FAM71D	161142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67688507	67688507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	67688507	C	A	67688507	3	1	454	1	0	0	0	0	1	0	0	0	5617	565	20	4	1190	4	FAM71D	14	67688507	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		67688507	39661033	55	26584											
DPF3	8110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73238479	73238479	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	73238479	T	G	73238479	3	3	454	1	0	0	0	0	1	0	0	0	4720	1725	60	5	950	5	DPF3	14	73238479	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	5549972	73238479	34111061	56	26585											
PPP4R4	57718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	94640864	94640864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	94640864	T	C	94640864	3	2	454	1	0	0	0	0	1	0	0	0	12415	1464	51	3	64	3	PPP4R4	14	94640864	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	21402385	94640864	12708676	57	26586											
OCA2	4948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28090200	28090200	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	28090200	T	A	28090200	5	1	454	1	0	0	0	0	0	0	1	0	10822	1536	53	5	187	5	OCA2	15	28090200	Splice_Site	SNP	T	TCGA-BQ-7044-01A-11D-1961-08		28090200	74441192	58	26587											
ITPKA	3706	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41794669	41794670	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	41794670	-	A	41794669	7	5	454	1	0	1	1	0	0	0	0	0	7924	1291	45	0	1096	0	ITPKA	15	41794669	Frame_Shift_Ins	INS	-	TCGA-BQ-7044-01A-11D-1961-08	13704469	41794669	60736723	59	26588											
C15orf43	145645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	45270783	45270783	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	-	45270783	A	-	45270783	7	5	454	1	0	1	0	1	0	0	0	0	1799	246	9	0	646	0	C15orf43	15	45270783	Frame_Shift_Del	DEL	A	TCGA-BQ-7044-01A-11D-1961-08	3476114	45270783	57260609	60	26589											
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64966235	64966235	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	64966235	G	T	64966235	2	4	454	1	0	0	0	0	0	0	0	1	18047	1161	41	4		4	ZNF609	15	64966235	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	19695452	64966235	37565157	61	26590											
THSD4	79875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72063439	72063439	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	72063439	G	C	72063439	3	2	454	1	0	0	0	0	1	0	0	0	15890	1175	41	4	2868	4	THSD4	15	72063439	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	7097204	72063439	30467953	62	26591											
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	83932666	83932666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	83932666	G	A	83932666	3	1	454	1	0	0	0	0	1	0	0	0	1474	1145	40	1	1655	1	BNC1	15	83932666	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	11869227	83932666	18598726	63	26592											
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	100871170	100871170	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	100871170	G	A	100871170	2	1	454	1	0	0	0	0	0	0	0	1	262	1280	45	2		2	ADAMTS17	15	100871170	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	16938504	100871170	1660222	64	26593											
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101933522	101933522	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	101933522	G	A	101933522	2	1	454	1	0	0	0	0	0	0	0	1	11611	1103	39	1		1	PCSK6	15	101933522	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	1062352	101933522	597870	65	26594											
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	55360382	55360382	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	55360382	G	A	55360382	2	1	454	1	0	0	0	0	0	0	0	1	7855	1074	38	1		1	IRX6	16	55360382	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		55360382	34994371	66	26595											
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66413245	66413245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	66413245	A	C	66413245	3	2	454	1	0	0	0	0	1	0	0	0	3115	188	7	5	7	5	CDH5	16	66413245	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	11052863	66413245	23941508	67	26596											
PLCG2	5336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81922847	81922847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	81922847	A	T	81922847	3	4	454	1	0	0	0	0	1	0	0	0	12043	246	9	5	870	5	PLCG2	16	81922847	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	15509602	81922847	8431906	68	26597											
P2RX5	5026	broad.mit.edu;bcgsc.ca	37	17	3583061	3583061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	3583061	G	A	3583061	3	1	454	1	0	0	0	0	1	0	0	0	11350	1174	41	2	194	2	P2RX5	17	3583061	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		3583061	77612149	69	26598											
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17722461	17722461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	17722461	T	C	17722461	3	2	454	1	0	0	0	0	1	0	0	0	15153	1580	55	3	2569	3	SREBF1	17	17722461	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	14139400	17722461	63472749	70	26599											
AKAP10	11216	bcgsc.ca	37	17	19845195	19845195	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	19845195	C	G	19845195	2	3	454	1	0	0	0	0	0	0	0	1	446	581	21	4		4	AKAP10	17	19845195	Silent	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	2122734	19845195	61350015	71	26600											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29490388	29490388	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	-	29490388	C	-	29490388	7	5	454	1	0	1	0	1	0	0	0	0	10363	913	32	0	487	0	NF1	17	29490388	Frame_Shift_Del	DEL	C	TCGA-BQ-7044-01A-11D-1961-08	9645193	29490388	51704822	72	26601											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29552188	29552189	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	-	29552189	AG	-	29552188	7	5	454	1	0	1	0	1	0	0	0	0	10363	188	7	0	2048	0	NF1	17	29552188	Frame_Shift_Del	DEL	AG	TCGA-BQ-7044-01A-11D-1961-08	61800	29552188	51643022	73	26602											
POLG2	11232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62486981	62486981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	62486981	C	G	62486981	3	3	454	1	0	0	0	0	1	0	0	0	12208	922	32	4	576	4	POLG2	17	62486981	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	32934793	62486981	18708229	74	26603											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78293016	78293016	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	78293016	C	G	78293016	2	3	454	1	0	0	0	0	0	0	0	1	13490	668	24	4		4	RNF213	17	78293016	Silent	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	15806035	78293016	2902194	75	26604											
SIRT7	51547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79870325	79870325	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	79870325	G	A	79870325	2	1	454	1	0	0	0	0	0	0	0	1	14356	1311	46	2		2	SIRT7	17	79870325	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	1577309	79870325	1324885	76	26605											
USP14	9097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	163336	163336	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	163336	T	G	163336	3	3	454	1	0	0	0	0	1	0	0	0	17057	1809	63	5	51	5	USP14	18	163336	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08		163336	77913912	77	26606											
C19orf45	374877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	7570473	7570475	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	-	7570475	CGG	-	7570473	7	5	454	1	0	1	0	1	0	0	0	0	1930	639	23	0	984	0	C19orf45	19	7570473	In_Frame_Del	DEL	CGG	TCGA-BQ-7044-01A-11D-1961-08		7570473	51558510	78	26607											
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16503123	16503124	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	AA	16503124	GT	AA	16503123	3	1	454	1	0	0	0	0	1	0	0	0	5195	1261	44	2	519	2	EPS15L1	19	16503123	Missense_Mutation	DNP	GT	TCGA-BQ-7044-01A-11D-1961-08	8932650	16503123	42625860	79	26608											
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16551694	16551694	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	16551694	A	G	16551694	2	3	454	1	0	0	0	0	0	0	0	1	5195	378	14	3		3	EPS15L1	19	16551694	Silent	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	48571	16551694	42577289	80	26609											
ELL	8178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18557590	18557590	+	Silent	SNP	G	G	A	rs200056265		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	18557590	G	A	18557590	2	1	454	1	0	0	0	0	0	0	0	1	5064	1335	47	2		2	ELL	19	18557590	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	2005896	18557590	40571393	81	26610											
ZNF708	7562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21493348	21493348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	21493348	A	G	21493348	3	3	454	1	0	0	0	0	1	0	0	0	18124	449	16	3	1618	3	ZNF708	19	21493348	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	2935758	21493348	37635635	82	26611											
ZNF30	90075	hgsc.bcm.edu;broad.mit.edu	37	19	35434184	35434184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	35434184	G	A	35434184	3	1	454	1	0	0	0	0	1	0	0	0	17842	1377	48	2	331	2	ZNF30	19	35434184	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	13940836	35434184	23694799	83	26612											
BCAM	4059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45322619	45322619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	45322619	C	T	45322619	3	4	454	1	0	0	0	0	1	0	0	0	1344	623	22	2	1536	2	BCAM	19	45322619	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	9888435	45322619	13806364	84	26613											
ZNF28	7576	ucsc.edu	37	19	53304673	53304673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	G	53304673	A	G	53304673	3	3	454	1	0	0	0	0	1	0	0	0	17825	372	13	3	1735	3	ZNF28	19	53304673	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	7982054	53304673	5824310	85	26614											
FCAR	2204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55385758	55385758	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	T	55385758	C	T	55385758	4	4	454	1	0	0	0	0	0	1	0	0	5780	479	17	2	15	2	FCAR	19	55385758	Nonsense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	2081085	55385758	3743225	86	26615											
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	49366983	49366991	+	In_Frame_Del	DEL	TCAAAAACT	TCAAAAACT	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	TCAAAAACT	TCAAAAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	-	49366991	TCAAAAACT	-	49366983	7	5	454	1	0	1	0	1	0	0	0	0	11453	1432	50	0	1087	0	PARD6B	20	49366983	In_Frame_Del	DEL	TCAAAAACT	TCGA-BQ-7044-01A-11D-1961-08		49366983	13658537	87	26616											
BMP7	655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	55777539	55777539	+	Missense_Mutation	SNP	G	G	A	rs112344257		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	A	55777539	G	A	55777539	3	1	454	1	0	0	0	0	1	0	0	0	1465	1145	40	1	563	1	BMP7	20	55777539	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	6410556	55777539	7247981	88	26617											
NYX	60506	hgsc.bcm.edu	37	X	41333524	41333524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	C	41333524	G	C	41333524	3	2	454	1	0	0	0	0	1	0	0	0	10804	1357	47	4	824	4	NYX	23	41333524	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		41333524	113937036	89	26618											
PORCN	64840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48371012	48371012	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	-	48371012	G	-	48371012	7	5	454	1	0	1	0	1	0	0	0	0	12265	1335	47	0	609	0	PORCN	23	48371012	Frame_Shift_Del	DEL	G	TCGA-BQ-7044-01A-11D-1961-08	7037488	48371012	106899548	90	26619											
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	33236795	33236795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	33236795	C	A	33236795	3	1	455	1	0	0	0	0	1	0	0	0	8245	594	21	4	2037	4	KIAA1522	1	33236795	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		33236795	216013826	1	26620											
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	48708165	48708165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	48708165	C	T	48708165	3	4	455	1	0	0	0	0	1	0	0	0	14685	681	24	2	1843	2	SLC5A9	1	48708165	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	15471370	48708165	200542456	2	26621											
CTH	1491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70895506	70895506	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	70895506	T	C	70895506	2	2	455	1	0	0	0	0	0	0	0	1	4011	1509	53	3		3	CTH	1	70895506	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	22187341	70895506	178355115	3	26622											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94528186	94528186	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	94528186	A	T	94528186	2	4	455	1	0	0	0	0	0	0	0	1	34	291	11	5		5	ABCA4	1	94528186	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	23632680	94528186	154722435	4	26623											
SEMA6C	10500	hgsc.bcm.edu	37	1	151112138	151112138	+	Silent	SNP	T	T	C	rs200312578	alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	151112138	T	C	151112138	2	2	455	1	0	0	0	0	0	0	0	1	14054	1606	56	3		3	SEMA6C	1	151112138	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	56583952	151112138	98138483	5	26624											
MRPL9	65005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151735603	151735616	+	Frame_Shift_Del	DEL	CGCTCCACGATGAC	CGCTCCACGATGAC	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	CGCTCCACGATGAC	CGCTCCACGATGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	-	151735616	CGCTCCACGATGAC	-	151735603	7	5	455	1	0	1	0	1	0	0	0	0	9827	768	27	0	654	0	MRPL9	1	151735603	Frame_Shift_Del	DEL	CGCTCCACGATGAC	TCGA-BQ-7045-01A-31D-1961-08	623465	151735603	97515018	6	26625											
PROX1	5629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	214170437	214170438	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	AT	214170438	-	AT	214170437	7	5	455	1	0	1	1	0	0	0	0	0	12570	130	5	0	561	0	PROX1	1	214170437	Frame_Shift_Ins	INS	-	TCGA-BQ-7045-01A-31D-1961-08	62434834	214170437	35080184	7	26626											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216373415	216373415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	216373415	G	A	216373415	3	1	455	1	0	0	0	0	1	0	0	0	17048	1174	41	2	12481	2	USH2A	1	216373415	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	2202978	216373415	32877206	8	26627											
PLEKHB2	55041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	131904282	131904282	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	-	131904282	C	-	131904282	7	5	455	1	0	1	0	1	0	0	0	0	12072	710	25	0	631	0	PLEKHB2	2	131904282	Frame_Shift_Del	DEL	C	TCGA-BQ-7045-01A-31D-1961-08		131904282	111295091	9	26628	333	2									
PLEKHB2	55041	hgsc.bcm.edu;bcgsc.ca	37	2	131904283	131904284	+	Missense_Mutation	DNP	AC	AC	GG	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	GG	131904284	AC	GG	131904283	3	3	455	1	0	0	0	0	1	0	0	0	12072	146	6	3	632	3	PLEKHB2	2	131904283	Missense_Mutation	DNP	AC	TCGA-BQ-7045-01A-31D-1961-08	1	131904283	111295090	10	26629	333	2									
HTR2B	3357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231988374	231988374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	231988374	C	A	231988374	3	1	455	1	0	0	0	0	1	0	0	0	7449	912	32	4	1352	4	HTR2B	2	231988374	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	100084091	231988374	11210999	11	26630											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238283616	238283616	+	Missense_Mutation	SNP	C	C	T	rs78427077		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	238283616	C	T	238283616	3	4	455	1	0	0	0	0	1	0	0	0	3703	536	19	1	6610	1	COL6A3	2	238283616	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	6295242	238283616	4915757	12	26631											
AZI2	64343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	28382066	28382066	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	-	28382066	C	-	28382066	7	5	455	1	0	1	0	1	0	0	0	0	1241	835	29	0	1252	0	AZI2	3	28382066	Frame_Shift_Del	DEL	C	TCGA-BQ-7045-01A-31D-1961-08		28382066	169640364	13	26632											
CRTAP	10491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	33156008	33156008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	33156008	C	T	33156008	3	4	455	1	0	0	0	0	1	0	0	0	3900	739	26	2	441	2	CRTAP	3	33156008	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	4773942	33156008	164866422	14	26633											
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46939563	46939563	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	46939563	G	T	46939563	5	4	455	1	0	0	0	0	0	0	1	0	12769	1014	35	4	442	4	PTH1R	3	46939563	Splice_Site	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	13783555	46939563	151082867	15	26634											
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49148708	49148709	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	AT	49148709	TC	AT	49148708	3	1	455	1	0	0	0	0	1	0	0	0	17062	1551	54	5	981	5	USP19	3	49148708	Missense_Mutation	DNP	TC	TCGA-BQ-7045-01A-31D-1961-08	2209145	49148708	148873722	16	26635											
CISH	1154	broad.mit.edu;bcgsc.ca	37	3	50645554	50645554	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	-	50645554	A	-	50645554	7	5	455	1	0	1	0	1	0	0	0	0	3439	358	13	0	519	0	CISH	3	50645554	Frame_Shift_Del	DEL	A	TCGA-BQ-7045-01A-31D-1961-08	1496846	50645554	147376876	17	26636											
MITF	4286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	69988260	69988261	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	69988261	-	T	69988260	7	5	455	1	0	1	1	0	0	0	0	0	9603	1020	36	0	829	0	MITF	3	69988260	Frame_Shift_Ins	INS	-	TCGA-BQ-7045-01A-31D-1961-08	19342706	69988260	128034170	18	26637											
ATP2C1	27032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130686204	130686204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	130686204	A	G	130686204	3	3	455	1	0	0	0	0	1	0	0	0	1143	412	15	3	1307	3	ATP2C1	3	130686204	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	60697944	130686204	67336226	19	26638											
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137805834	137805834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	137805834	A	G	137805834	3	3	455	1	0	0	0	0	1	0	0	0	4866	188	7	3	1321	3	DZIP1L	3	137805834	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	7119630	137805834	60216596	20	26639											
RASA2	5922	broad.mit.edu;bcgsc.ca	37	3	141326509	141326518	+	Splice_Site	DEL	TTATTATTTA	TTATTATTTA	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	TTATTATTTA	TTATTATTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	-	141326518	TTATTATTTA	-	141326509	8	5	455	1	0	1	0	1	0	0	1	0	13074	1856	64	0		0	RASA2	3	141326509	Splice_Site	DEL	TTATTATTTA	TCGA-BQ-7045-01A-31D-1961-08	3520675	141326509	56695921	21	26640											
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184041746	184041746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	184041746	T	C	184041746	3	2	455	1	0	0	0	0	1	0	0	0	5038	1464	51	3	2507	3	EIF4G1	3	184041746	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	42715237	184041746	13980684	22	26641											
HGFAC	3083	ucsc.edu	37	4	3444828	3444828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	3444828	G	A	3444828	3	1	455	1	0	0	0	0	1	0	0	0	7093	1087	38	1	360	1	HGFAC	4	3444828	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		3444828	187709448	23	26642											
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17590497	17590497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	17590497	G	A	17590497	3	1	455	1	0	0	0	0	1	0	0	0	8630	1001	35	2	786	2	LAP3	4	17590497	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	14145669	17590497	173563779	24	26643											
TMEM156	80008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	38990526	38990526	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	38990526	G	T	38990526	2	4	455	1	0	0	0	0	0	0	0	1	16085	1280	45	4		4	TMEM156	4	38990526	Silent	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	21400029	38990526	152163750	25	26644											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	55981041	55981042	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	55981042	-	T	55981041	7	5	455	1	0	1	1	0	0	0	0	0	8146	695	24	0	3516	0	KDR	4	55981041	Frame_Shift_Ins	INS	-	TCGA-BQ-7045-01A-31D-1961-08	16990515	55981041	135173235	26	26645											
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	57182080	57182080	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	-	57182080	T	-	57182080	7	5	455	1	0	1	0	1	0	0	0	0	8222	1596	56	0	2430	0	KIAA1211	4	57182080	Frame_Shift_Del	DEL	T	TCGA-BQ-7045-01A-31D-1961-08	1201039	57182080	133972196	27	26646											
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	82074809	82074809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	82074809	C	A	82074809	3	1	455	1	0	0	0	0	1	0	0	0	12533	739	26	4	1361	4	PRKG2	4	82074809	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	24892729	82074809	109079467	28	26647											
OSTC	58505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	109571838	109571838	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	109571838	C	T	109571838	2	4	455	1	0	0	0	0	0	0	0	1	11303	912	32	2		2	OSTC	4	109571838	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	27497029	109571838	81582438	29	26648											
NDUFS6	4726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1801592	1801592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	1801592	C	A	1801592	3	1	455	1	0	0	0	0	1	0	0	0	10303	680	24	4	63	4	NDUFS6	5	1801592	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		1801592	179113668	30	26649											
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	147010974	147010974	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	147010974	A	G	147010974	5	3	455	1	0	0	0	0	0	0	1	0	7948	405	14	3	587	3	JAKMIP2	5	147010974	Splice_Site	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	145209382	147010974	33904286	31	26650											
C6orf195	154386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	2623684	2623684	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	2623684	C	A	2623684	4	1	455	1	0	0	0	0	0	1	0	0	2352	835	29	4	14	4	C6orf195	6	2623684	Nonsense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		2623684	168491383	32	26651											
C6orf223	221416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43970795	43970795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	43970795	C	T	43970795	3	4	455	1	0	0	0	0	1	0	0	0	2359	768	27	1	718	1	C6orf223	6	43970795	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	41347111	43970795	127144272	33	26652											
RUNX2	860	hgsc.bcm.edu	37	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	45390466	A	G	45390466	2	3	455	1	0	0	0	0	0	0	0	1	13761	40	2	3		3	RUNX2	6	45390466	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	1419671	45390466	125724601	34	26653											
KIAA1919	91749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111587895	111587895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	111587895	A	T	111587895	3	4	455	1	0	0	0	0	1	0	0	0	8269	130	5	5	1144	5	KIAA1919	6	111587895	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	66197429	111587895	59527172	35	26654											
MLLT4	4301	ucsc.edu;bcgsc.ca	37	6	168276027	168276027	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	168276027	A	C	168276027	2	2	455	1	0	0	0	0	0	0	0	1	9636	262	10	5		5	MLLT4	6	168276027	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	56688132	168276027	2839040	36	26655											
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	169622311	169622311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	169622311	G	T	169622311	3	4	455	1	0	0	0	0	1	0	0	0	15866	1145	40	4	280	4	THBS2	6	169622311	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	1346284	169622311	1492756	37	26656											
CCM2	83605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	45104062	45104062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	45104062	A	G	45104062	3	3	455	1	0	0	0	0	1	0	0	0	2910	318	11	3	400	3	CCM2	7	45104062	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08		45104062	114034601	38	26657											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82532016	82532016	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	82532016	A	G	82532016	2	3	455	1	0	0	0	0	0	0	0	1	11590	291	11	3		3	PCLO	7	82532016	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	37427954	82532016	76606647	39	26658											
AGFG2	3268	hgsc.bcm.edu;broad.mit.edu	37	7	100160553	100160553	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	100160553	C	T	100160553	2	4	455	1	0	0	0	0	0	0	0	1	381	581	21	2		2	AGFG2	7	100160553	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	17628537	100160553	58978110	40	26659											
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132523165	132523165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	132523165	T	G	132523165	3	3	455	1	0	0	0	0	1	0	0	0	3319	1609	56	5	177	5	CHCHD3	7	132523165	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	32362612	132523165	26615498	41	26660											
TRPV6	55503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142569741	142569741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	142569741	C	A	142569741	3	1	455	1	0	0	0	0	1	0	0	0	16612	521	18	4	284	4	TRPV6	7	142569741	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	10046576	142569741	16568922	42	26661											
NUB1	51667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151064971	151064971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	151064971	C	A	151064971	3	1	455	1	0	0	0	0	1	0	0	0	10721	564	20	4	1046	4	NUB1	7	151064971	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	8495230	151064971	8073692	43	26662											
KCNV1	27012	hgsc.bcm.edu	37	8	110986410	110986410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	110986410	C	A	110986410	3	1	455	1	0	0	0	0	1	0	0	0	8101	536	19	4	1306	4	KCNV1	8	110986410	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		110986410	35377612	44	26663											
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	119202962	119202962	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	119202962	G	T	119202962	2	4	455	1	0	0	0	0	0	0	0	1	1065	1161	41	4		4	ASTN2	9	119202962	Silent	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		119202962	22010469	45	26664											
PTRH1	138428	ucsc.edu	37	9	130476385	130476385	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	130476385	C	T	130476385	2	4	455	1	0	0	0	0	0	0	0	1	12829	726	26	2		2	PTRH1	9	130476385	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	11273423	130476385	10737046	46	26665											
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131028577	131028577	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	131028577	G	A	131028577	4	1	455	1	0	0	0	0	0	1	0	0	6559	1299	45	2	2495	2	GOLGA2	9	131028577	Nonsense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	552192	131028577	10184854	47	26666											
UBAC1	10422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138839743	138839743	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	138839743	T	C	138839743	2	2	455	1	0	0	0	0	0	0	0	1	16846	1606	56	3		3	UBAC1	9	138839743	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	7811166	138839743	2373688	48	26667											
NOTCH1	4851	ucsc.edu	37	9	139418248	139418248	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	139418248	G	A	139418248	2	1	455	1	0	0	0	0	0	0	0	1	10554	1335	47	2		2	NOTCH1	9	139418248	Silent	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	578505	139418248	1795183	49	26668											
CDHR1	92211	broad.mit.edu	37	10	85968003	85968003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	85968003	T	C	85968003	3	2	455	1	0	0	0	0	1	0	0	0	3120	1551	54	3	1079	3	CDHR1	10	85968003	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08		85968003	49566744	50	26669											
OR4C15	81309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55322355	55322355	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	55322355	G	C	55322355	3	2	455	1	0	0	0	0	1	0	0	0	11055	1165	41	4	575	4	OR4C15	11	55322355	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		55322355	79684161	51	26670											
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73745646	73745646	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	-	73745646	G	-	73745646	7	5	455	1	0	1	0	1	0	0	0	0	2156	1024	36	0	6	0	C2CD3	11	73745646	Frame_Shift_Del	DEL	G	TCGA-BQ-7045-01A-31D-1961-08	18423291	73745646	61260870	52	26671											
TPI1	7167	broad.mit.edu;bcgsc.ca	37	12	6976722	6976722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	6976722	T	C	6976722	3	2	455	1	0	0	0	0	1	0	0	0	16415	1551	54	3	105	3	TPI1	12	6976722	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08		6976722	126875173	53	26672											
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	59283874	59283874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	59283874	T	A	59283874	3	1	455	1	0	0	0	0	1	0	0	0	8953	1667	58	5	2856	5	LRIG3	12	59283874	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	52307152	59283874	74568021	54	26673											
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	30096467	30096467	+	Silent	SNP	C	C	T	rs150705194		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	30096467	C	T	30096467	2	4	455	1	0	0	0	0	0	0	0	1	14705	639	23	1		1	SLC7A1	13	30096467	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		30096467	85073411	55	26674											
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	94482740	94482740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	94482740	C	G	94482740	3	3	455	1	0	0	0	0	1	0	0	0	6609	739	26	4	663	4	GPC6	13	94482740	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	64386273	94482740	20687138	56	26675											
RAP2A	5911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	98086836	98086836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	98086836	G	A	98086836	3	1	455	1	0	0	0	0	1	0	0	0	13053	1174	41	2	114	2	RAP2A	13	98086836	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	3604096	98086836	17083042	57	26676											
GPR18	2841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99907879	99907879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	99907879	G	A	99907879	3	1	455	1	0	0	0	0	1	0	0	0	6682	1319	46	2	751	2	GPR18	13	99907879	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	1821043	99907879	15261999	58	26677											
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20345257	20345257	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	20345257	C	A	20345257	2	1	455	1	0	0	0	0	0	0	0	1	11079	903	32	4		4	OR4K2	14	20345257	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		20345257	87004283	59	26678											
SNX6	58533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35062276	35062276	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	35062276	A	T	35062276	2	4	455	1	0	0	0	0	0	0	0	1	14919	175	7	5		5	SNX6	14	35062276	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	14717019	35062276	72287264	60	26679											
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38724316	38724316	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	38724316	C	T	38724316	2	4	455	1	0	0	0	0	0	0	0	1	3501	738	26	2		2	CLEC14A	14	38724316	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	3662040	38724316	68625224	61	26680											
PRPF39	55015	hgsc.bcm.edu	37	14	45565377	45565377	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	45565377	G	C	45565377	3	2	455	1	0	0	0	0	1	0	0	0	12579	1183	41	4	402	4	PRPF39	14	45565377	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	6841061	45565377	61784163	62	26681											
FERMT2	10979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53386065	53386065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	53386065	T	A	53386065	3	1	455	1	0	0	0	0	1	0	0	0	5825	1841	64	5	1964	5	FERMT2	14	53386065	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	7820688	53386065	53963475	63	26682											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102466716	102466716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	102466716	G	A	102466716	3	1	455	1	0	0	0	0	1	0	0	0	4843	1261	44	2	4124	2	DYNC1H1	14	102466716	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	49080651	102466716	4882824	64	26683											
DYNC1H1	1778	broad.mit.edu	37	14	102483738	102483738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	102483738	T	C	102483738	3	2	455	1	0	0	0	0	1	0	0	0	4843	1609	56	3	8232	3	DYNC1H1	14	102483738	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	17022	102483738	4865802	65	26684											
ATP10A	57194	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	25924510	25924510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	25924510	G	A	25924510	3	1	455	1	0	0	0	0	1	0	0	0	1116	1319	46	2	25	2	ATP10A	15	25924510	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		25924510	76606882	66	26685											
HAPLN3	145864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	89422488	89422488	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	-	89422488	G	-	89422488	7	5	455	1	0	1	0	1	0	0	0	0	6963	1000	35	0	584	0	HAPLN3	15	89422488	Frame_Shift_Del	DEL	G	TCGA-BQ-7045-01A-31D-1961-08	63497978	89422488	13108904	67	26686											
SYNM	23336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	99670274	99670274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	99670274	A	T	99670274	3	4	455	1	0	0	0	0	1	0	0	0	15467	72	3	5	1722	5	SYNM	15	99670274	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	10247786	99670274	2861118	68	26687											
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2052644	2052644	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	2052644	C	T	2052644	2	4	455	1	0	0	0	0	0	0	0	1	18040	726	26	2		2	ZNF598	16	2052644	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		2052644	88302109	69	26688											
CLUAP1	23059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3554721	3554721	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	3554721	T	C	3554721	2	2	455	1	0	0	0	0	0	0	0	1	3571	1507	52	3		3	CLUAP1	16	3554721	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	1502077	3554721	86800032	70	26689											
SPG7	6687	broad.mit.edu	37	16	89613084	89613084	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	89613084	G	T	89613084	4	4	455	1	0	0	0	0	0	1	0	0	15056	1291	45	4	1660	4	SPG7	16	89613084	Nonsense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	86058363	89613084	741669	71	26690											
TIAF1	9220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27400954	27400954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	27400954	C	G	27400954	3	3	455	1	0	0	0	0	1	0	0	0	15900	622	22	4	87	4	TIAF1	17	27400954	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		27400954	53794256	72	26691											
TMEM101	84336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42089524	42089524	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	42089524	C	T	42089524	2	4	455	1	0	0	0	0	0	0	0	1	16028	465	17	2		2	TMEM101	17	42089524	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	14688570	42089524	39105686	73	26692											
TOB1	10140	broad.mit.edu	37	17	48941062	48941062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	48941062	T	C	48941062	3	2	455	1	0	0	0	0	1	0	0	0	16359	1609	56	3	724	3	TOB1	17	48941062	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	6851538	48941062	32254148	74	26693											
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56386306	56386306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	56386306	G	T	56386306	3	4	455	1	0	0	0	0	1	0	0	0	1579	1020	36	4	1286	4	BZRAP1	17	56386306	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	7445244	56386306	24808904	75	26694											
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61623123	61623123	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	61623123	C	T	61623123	2	4	455	1	0	0	0	0	0	0	0	1	8043	912	32	2		2	KCNH6	17	61623123	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	5236817	61623123	19572087	76	26695											
EVPL	2125	broad.mit.edu;bcgsc.ca	37	17	74004559	74004559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	74004559	C	T	74004559	3	4	455	1	0	0	0	0	1	0	0	0	5294	652	23	1	1378	1	EVPL	17	74004559	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	12381436	74004559	7190651	77	26696											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9257291	9257291	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	9257291	T	C	9257291	2	2	455	1	0	0	0	0	0	0	0	1	640	1509	53	3		3	ANKRD12	18	9257291	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08		9257291	68819957	78	26697											
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	31263418	31263418	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	31263418	A	G	31263418	2	3	455	1	0	0	0	0	0	0	0	1	1068	320	12	3		3	ASXL3	18	31263418	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	22006127	31263418	46813830	79	26698											
ELAC1	55520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	48513160	48513160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	48513160	G	C	48513160	3	2	455	1	0	0	0	0	1	0	0	0	5048	1319	46	4	807	4	ELAC1	18	48513160	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	17249742	48513160	29564088	80	26699											
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	56196435	56196435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	56196435	A	G	56196435	3	3	455	1	0	0	0	0	1	0	0	0	545	43	2	3	1155	3	ALPK2	18	56196435	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	7683275	56196435	21880813	81	26700											
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4512468	4512468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	4512468	C	T	4512468	3	4	455	1	0	0	0	0	1	0	0	0	12099	478	17	2	2627	2	PLIN4	19	4512468	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		4512468	54616515	82	26701											
ALKBH7	84266	hgsc.bcm.edu	37	19	6372879	6372879	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	6372879	C	G	6372879	3	3	455	1	0	0	0	0	1	0	0	0	532	796	28	4	50	4	ALKBH7	19	6372879	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	1860411	6372879	52756104	83	26702											
ZNF763	284390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12089881	12089881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	12089881	T	C	12089881	3	2	455	1	0	0	0	0	1	0	0	0	18149	1841	64	3	1165	3	ZNF763	19	12089881	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	5717002	12089881	47039102	84	26703											
ZSWIM4	65249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13915960	13915960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	13915960	A	G	13915960	3	3	455	1	0	0	0	0	1	0	0	0	18255	101	4	3	720	3	ZSWIM4	19	13915960	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	1826079	13915960	45213023	85	26704											
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17946018	17946018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	17946018	T	C	17946018	3	2	455	1	0	0	0	0	1	0	0	0	7946	1821	63	3	1493	3	JAK3	19	17946018	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	4030058	17946018	41182965	86	26705											
ZNF626	199777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	20808028	20808028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	20808028	G	A	20808028	3	1	455	1	0	0	0	0	1	0	0	0	18062	1377	48	2	935	2	ZNF626	19	20808028	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	2862010	20808028	38320955	87	26706											
ZNF787	126208	hgsc.bcm.edu	37	19	56599455	56599455	+	Missense_Mutation	SNP	C	C	G	rs202243737		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	56599455	C	G	56599455	3	3	455	1	0	0	0	0	1	0	0	0	18171	680	24	4	69	4	ZNF787	19	56599455	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	35791427	56599455	2529528	88	26707											
GDF5	8200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34025518	34025518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	34025518	C	T	34025518	3	4	455	1	0	0	0	0	1	0	0	0	6323	797	28	2	1322	2	GDF5	20	34025518	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		34025518	29000002	89	26708											
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50405586	50405586	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	50405586	G	A	50405586	2	1	455	1	0	0	0	0	0	0	0	1	13826	1219	43	2		2	SALL4	20	50405586	Silent	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	16380068	50405586	12619934	90	26709											
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31768620	31768620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	31768620	G	T	31768620	3	4	455	1	0	0	0	0	1	0	0	0	8529	1020	36	4	218	4	KRTAP13-1	21	31768620	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		31768620	16361275	91	26710											
NDUFV3	4731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44317078	44317078	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	C	44317078	T	C	44317078	2	2	455	1	0	0	0	0	0	0	0	1	10308	1509	53	3		3	NDUFV3	21	44317078	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	12548458	44317078	3812817	92	26711											
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22287929	22287929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	22287929	A	G	22287929	3	3	455	1	0	0	0	0	1	0	0	0	12349	14	1	3	799	3	PPM1F	22	22287929	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08		22287929	29016637	93	26712											
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31924806	31924806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	31924806	C	T	31924806	3	4	455	1	0	0	0	0	1	0	0	0	14169	478	17	2	229	2	SFI1	22	31924806	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	9636877	31924806	19379760	94	26713											
APOL1	8542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36661665	36661665	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	T	36661665	C	T	36661665	2	4	455	1	0	0	0	0	0	0	0	1	805	477	17	2		2	APOL1	22	36661665	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	4736859	36661665	14642901	95	26714											
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu	37	22	40669533	40669533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	G	40669533	A	G	40669533	3	3	455	1	0	0	0	0	1	0	0	0	16353	159	6	3	3217	3	TNRC6B	22	40669533	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	4007868	40669533	10635033	96	26715											
GLUD2	2747	ucsc.edu	37	X	120182805	120182805	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	120182805	T	A	120182805	3	1	455	1	0	0	0	0	1	0	0	0	6484	1838	64	5	1269	5	GLUD2	23	120182805	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08		120182805	35087755	97	26716											
RPL10	6134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153627911	153627911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	A	153627911	G	A	153627911	3	1	455	1	0	0	0	0	1	0	0	0	13567	1291	45	2	176	2	RPL10	23	153627911	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	33445106	153627911	1642649	98	26717											
CDK11A	728642	broad.mit.edu	37	1	1638914	1638914	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	T	1638914	G	T	1638914	2	4	456	1	0	0	0	0	0	0	0	1	3128	1103	39	4		4	CDK11A	1	1638914	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		1638914	247611707	1	26718											
NPHP4	261734	broad.mit.edu	37	1	5935029	5935029	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	5935029	G	A	5935029	2	1	456	1	0	0	0	0	0	0	0	1	10588	1335	47	2		2	NPHP4	1	5935029	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	4296115	5935029	243315592	2	26719											
RPS6KA1	6195	broad.mit.edu;bcgsc.ca	37	1	26885310	26885310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	26885310	T	C	26885310	3	2	456	1	0	0	0	0	1	0	0	0	13663	1435	50	3	1290	3	RPS6KA1	1	26885310	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	20950281	26885310	222365311	3	26720											
CGN	57530	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151509762	151509762	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	T	151509762	C	T	151509762	2	4	456	1	0	0	0	0	0	0	0	1	3305	547	19	1		1	CGN	1	151509762	Silent	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	124624452	151509762	97740859	4	26721											
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154562826	154562826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	154562826	T	C	154562826	3	2	456	1	0	0	0	0	1	0	0	0	281	1609	56	3	1386	3	ADAR	1	154562826	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	3053064	154562826	94687795	5	26722											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201034981	201034981	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	T	201034981	G	T	201034981	2	4	456	1	0	0	0	0	0	0	0	1	2549	1074	38	4		4	CACNA1S	1	201034981	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	46472155	201034981	48215640	6	26723											
C2orf44	80304	bcgsc.ca	37	2	24261378	24261378	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	24261378	G	C	24261378	2	2	456	1	0	0	0	0	0	0	0	1	2170	1335	47	4		4	C2orf44	2	24261378	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		24261378	218937995	7	26724											
KCNG3	170850	ucsc.edu	37	2	42720017	42720017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	42720017	G	A	42720017	3	1	456	1	0	0	0	0	1	0	0	0	8036	1115	39	1	693	1	KCNG3	2	42720017	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	18458639	42720017	200479356	8	26725											
DCTN1	1639	broad.mit.edu	37	2	74604848	74604848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	74604848	C	G	74604848	3	3	456	1	0	0	0	0	1	0	0	0	4308	680	24	4	3683	4	DCTN1	2	74604848	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	31884831	74604848	168594525	9	26726											
CCR3	1232	broad.mit.edu	37	3	46306948	46306948	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	-	46306948	T	-	46306948	7	5	456	1	0	1	0	1	0	0	0	0	2944	1725	60	0	368	0	CCR3	3	46306948	Frame_Shift_Del	DEL	T	TCGA-BQ-7046-01A-11D-1961-08		46306948	151715482	10	26727											
KIAA1407	57577	broad.mit.edu	37	3	113724781	113724781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	113724781	T	C	113724781	3	2	456	1	0	0	0	0	1	0	0	0	8236	1609	56	3	1400	3	KIAA1407	3	113724781	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	67417833	113724781	84297649	11	26728											
HPS3	84343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148872995	148872995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	148872995	A	G	148872995	3	3	456	1	0	0	0	0	1	0	0	0	7347	14	1	3	1532	3	HPS3	3	148872995	Missense_Mutation	SNP	A	TCGA-BQ-7046-01A-11D-1961-08	35148214	148872995	49149435	12	26729											
RBM47	54502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40440532	40440532	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	40440532	C	G	40440532	3	3	456	1	0	0	0	0	1	0	0	0	13154	768	27	4	1418	4	RBM47	4	40440532	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08		40440532	150713744	13	26730											
DNAH5	1767	hgsc.bcm.edu	37	5	13727614	13727614	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	13727614	A	G	13727614	5	3	456	1	0	0	0	0	0	0	1	0	4606	405	14	3	1879	3	DNAH5	5	13727614	Splice_Site	SNP	A	TCGA-BQ-7046-01A-11D-1961-08		13727614	167187646	14	26731											
DMXL1	1657	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118525502	118525502	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	118525502	C	G	118525502	3	3	456	1	0	0	0	0	1	0	0	0	4596	594	21	4	7349	4	DMXL1	5	118525502	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	104797888	118525502	62389758	15	26732											
CCNG1	900	bcgsc.ca	37	5	162868217	162868217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	162868217	A	G	162868217	3	3	456	1	0	0	0	0	1	0	0	0	2925	275	10	3	404	3	CCNG1	5	162868217	Missense_Mutation	SNP	A	TCGA-BQ-7046-01A-11D-1961-08	44342715	162868217	18047043	16	26733											
RAB24	53917	broad.mit.edu;bcgsc.ca	37	5	176729807	176729807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	176729807	C	G	176729807	3	3	456	1	0	0	0	0	1	0	0	0	12924	835	29	4	424	4	RAB24	5	176729807	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	13861590	176729807	4185453	17	26734											
KIAA0319	9856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24578370	24578370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	24578370	C	G	24578370	3	3	456	1	0	0	0	0	1	0	0	0	8175	477	17	4	1797	4	KIAA0319	6	24578370	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08		24578370	146536697	18	26735											
HLA-B	3106	ucsc.edu	37	6	31323371	31323371	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	31323371	T	C	31323371	5	2	456	1	0	0	0	0	0	0	1	0	7203	1594	55	3	486	3	HLA-B	6	31323371	Splice_Site	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	6745001	31323371	139791696	19	26736											
RUNX2	860	broad.mit.edu	37	6	45390446	45390448	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	-	45390448	CAG	-	45390446	7	5	456	1	0	1	0	1	0	0	0	0	13761	479	17	0	197	0	RUNX2	6	45390446	In_Frame_Del	DEL	CAG	TCGA-BQ-7046-01A-11D-1961-08	14067075	45390446	125724621	20	26737											
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21737744	21737744	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	21737744	A	G	21737744	2	3	456	1	0	0	0	0	0	0	0	1	4601	417	15	3		3	DNAH11	7	21737744	Silent	SNP	A	TCGA-BQ-7046-01A-11D-1961-08		21737744	137400919	21	26738											
FGL2	10875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	76828725	76828726	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	T	76828726	-	T	76828725	7	5	456	1	0	1	1	0	0	0	0	0	5880	913	32	0	941	0	FGL2	7	76828725	Frame_Shift_Ins	INS	-	TCGA-BQ-7046-01A-11D-1961-08	55090981	76828725	82309938	22	26739											
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	17462949	17462949	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	-	17462949	T	-	17462949	7	5	456	1	0	1	0	1	0	0	0	0	3641	1461	51	0	3450	0	CNTLN	9	17462949	Frame_Shift_Del	DEL	T	TCGA-BQ-7046-01A-11D-1961-08		17462949	123750482	23	26740											
TLN1	7094	broad.mit.edu	37	9	35703618	35703618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	35703618	T	C	35703618	3	2	456	1	0	0	0	0	1	0	0	0	15959	1551	54	3	1252	3	TLN1	9	35703618	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	18240669	35703618	105509813	24	26741											
SVIL	6840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	29811367	29811367	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	29811367	G	C	29811367	3	2	456	1	0	0	0	0	1	0	0	0	15433	1261	44	4	3375	4	SVIL	10	29811367	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		29811367	105723380	25	26742											
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	34648076	34648076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	34648076	T	C	34648076	3	2	456	1	0	0	0	0	1	0	0	0	11450	1565	54	3	2087	3	PARD3	10	34648076	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	4836709	34648076	100886671	26	26743											
TMEM26	219623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	63212836	63212836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	T	63212836	C	T	63212836	3	4	456	1	0	0	0	0	1	0	0	0	16163	864	30	2	1126	2	TMEM26	10	63212836	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	28564760	63212836	72321911	27	26744											
DNAJB12	54788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74100871	74100871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	74100871	T	A	74100871	3	1	456	1	0	0	0	0	1	0	0	0	4619	1580	55	5	632	5	DNAJB12	10	74100871	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	10888035	74100871	61433876	28	26745											
CTSD	1509	broad.mit.edu;bcgsc.ca	37	11	1776167	1776167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	1776167	G	A	1776167	3	1	456	1	0	0	0	0	1	0	0	0	4034	1116	39	1	458	1	CTSD	11	1776167	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		1776167	133230349	29	26746											
C11orf84	144097	broad.mit.edu	37	11	63594447	63594448	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	-	63594448	GT	-	63594447	7	5	456	1	0	1	0	1	0	0	0	0	1669	1145	40	0	1004	0	C11orf84	11	63594447	Frame_Shift_Del	DEL	GT	TCGA-BQ-7046-01A-11D-1961-08	61818280	63594447	71412069	30	26747											
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64453122	64453122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	T	64453122	C	T	64453122	3	4	456	1	0	0	0	0	1	0	0	0	10673	768	27	1	4331	1	NRXN2	11	64453122	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	858675	64453122	70553394	31	26748											
ROBO4	54538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124765531	124765531	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	124765531	G	A	124765531	2	1	456	1	0	0	0	0	0	0	0	1	13529	1219	43	2		2	ROBO4	11	124765531	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	60312409	124765531	10240985	32	26749											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12334210	12334210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	12334210	T	G	12334210	3	3	456	1	0	0	0	0	1	0	0	0	8969	1606	56	5	3773	5	LRP6	12	12334210	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08		12334210	121517685	33	26750											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	67691215	67691215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	67691215	C	A	67691215	3	1	456	1	0	0	0	0	1	0	0	0	2617	855	30	4	538	4	CAND1	12	67691215	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	55357005	67691215	66160680	34	26751											
TDG	6996	hgsc.bcm.edu	37	12	104359839	104359839	+	Splice_Site	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	104359839	G	C	104359839	5	2	456	1	0	0	0	0	0	0	1	0	15737	1275	44	4	26	4	TDG	12	104359839	Splice_Site	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	36668624	104359839	29492056	35	26752											
CIT	11113	broad.mit.edu	37	12	120150415	120150415	+	Silent	SNP	G	G	C	rs147828404	alternate_allele	TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	120150415	G	C	120150415	2	2	456	1	0	0	0	0	0	0	0	1	3440	1045	37	4		4	CIT	12	120150415	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	15790576	120150415	13701480	36	26753											
CHD8	57680	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21862588	21862588	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	21862588	T	A	21862588	3	1	456	1	0	0	0	0	1	0	0	0	3333	1783	62	5	2330	5	CHD8	14	21862588	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08		21862588	85486952	37	26754											
NR2F2	7026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	96875635	96875635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	96875635	A	G	96875635	3	3	456	1	0	0	0	0	1	0	0	0	10635	304	11	3	350	3	NR2F2	15	96875635	Missense_Mutation	SNP	A	TCGA-BQ-7046-01A-11D-1961-08		96875635	5655757	38	26755											
RSPRY1	89970	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	57261323	57261323	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	-	57261323	A	-	57261323	7	5	456	1	0	1	0	1	0	0	0	0	13726	130	5	0	1269	0	RSPRY1	16	57261323	Frame_Shift_Del	DEL	A	TCGA-BQ-7046-01A-11D-1961-08		57261323	33093430	39	26756											
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3788981	3788981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	3788981	T	C	3788981	3	2	456	1	0	0	0	0	1	0	0	0	2608	1493	52	3	1698	3	CAMKK1	17	3788981	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08		3788981	77406229	40	26757											
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4451584	4451584	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	T	4451584	C	T	4451584	2	4	456	1	0	0	0	0	0	0	0	1	10015	755	27	1		1	MYBBP1A	17	4451584	Silent	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	662603	4451584	76743626	41	26758											
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39140321	39140321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	39140321	T	A	39140321	3	1	456	1	0	0	0	0	1	0	0	0	8485	1754	61	5	1118	5	KRT40	17	39140321	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	34688737	39140321	42054889	42	26759											
ADAM11	4185	broad.mit.edu;bcgsc.ca	37	17	42855164	42855164	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	G	42855164	C	G	42855164	3	3	456	1	0	0	0	0	1	0	0	0	235	594	21	4	2093	4	ADAM11	17	42855164	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	3714843	42855164	38340046	43	26760											
GPRC5C	55890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72436053	72436053	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	72436053	T	A	72436053	2	1	456	1	0	0	0	0	0	0	0	1	6733	1567	55	5		5	GPRC5C	17	72436053	Silent	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	29580889	72436053	8759157	44	26761											
FZR1	51343	broad.mit.edu;bcgsc.ca	37	19	3525916	3525916	+	Silent	SNP	G	G	A	rs201664307		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	3525916	G	A	3525916	2	1	456	1	0	0	0	0	0	0	0	1	6145	1074	38	1		1	FZR1	19	3525916	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		3525916	55603067	45	26762											
ZNF493	284443	hgsc.bcm.edu	37	19	21606636	21606636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	21606636	T	C	21606636	3	2	456	1	0	0	0	0	1	0	0	0	17956	1609	56	3	1252	3	ZNF493	19	21606636	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	18080720	21606636	37522347	46	26763											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	46254125	46254125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	T	46254125	G	T	46254125	3	4	456	1	0	0	0	0	1	0	0	0	10237	1188	41	4	267	4	NCOA3	20	46254125	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		46254125	16771395	47	26764											
BACH1	571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	30698866	30698866	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	-	30698866	A	-	30698866	7	5	456	1	0	1	0	1	0	0	0	0	1283	391	14	0	727	0	BACH1	21	30698866	Frame_Shift_Del	DEL	A	TCGA-BQ-7046-01A-11D-1961-08		30698866	17431029	48	26765											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41459172	41459172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	A	41459172	G	A	41459172	3	1	456	1	0	0	0	0	1	0	0	0	4770	1348	47	2	2193	2	DSCAM	21	41459172	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	10760306	41459172	6670723	49	26766											
SNAP29	9342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21237785	21237785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	21237785	G	C	21237785	3	2	456	1	0	0	0	0	1	0	0	0	14844	1319	46	4	561	4	SNAP29	22	21237785	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		21237785	30066781	50	26767											
HIC2	23119	hgsc.bcm.edu	37	22	21799620	21799620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	C	21799620	T	C	21799620	3	2	456	1	0	0	0	0	1	0	0	0	7109	1609	56	3	442	3	HIC2	22	21799620	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	561835	21799620	29504946	51	26768											
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90399759	90399759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	90399759	T	A	90399759	3	1	457	1	0	0	0	0	1	0	0	0	9031	1609	56	5	1134	5	LRRC8D	1	90399759	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		90399759	158850862	1	26769											
GFI1	2672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	92948601	92948601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	92948601	T	C	92948601	3	2	457	1	0	0	0	0	1	0	0	0	6346	1580	55	3	1170	3	GFI1	1	92948601	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	2548842	92948601	156302020	2	26770											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94506770	94506770	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	94506770	T	A	94506770	3	1	457	1	0	0	0	0	1	0	0	0	34	1580	55	5	3416	5	ABCA4	1	94506770	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	1558169	94506770	154743851	3	26771											
TTF2	8458	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117633172	117633172	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	117633172	A	T	117633172	4	4	457	1	0	0	0	0	0	1	0	0	16731	363	13	5	2573	5	TTF2	1	117633172	Nonsense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	23126402	117633172	131617449	4	26772											
NBPF9	400818	broad.mit.edu	37	1	144823878	144823878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	144823878	A	C	144823878	3	2	457	1	0	0	0	0	1	0	0	0	10206	449	16	5	1971	5	NBPF9	1	144823878	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	27190706	144823878	104426743	5	26773											
SCYL3	57147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169824950	169824950	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	169824950	A	T	169824950	2	4	457	1	0	0	0	0	0	0	0	1	13962	291	11	5		5	SCYL3	1	169824950	Silent	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	25001072	169824950	79425671	6	26774											
DNM3	26052	hgsc.bcm.edu;broad.mit.edu	37	1	171810797	171810797	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	171810797	A	C	171810797	3	2	457	1	0	0	0	0	1	0	0	0	4675	333	12	5	3	5	DNM3	1	171810797	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	1985847	171810797	77439824	7	26775											
NPL	80896	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182775301	182775301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	182775301	G	C	182775301	3	2	457	1	0	0	0	0	1	0	0	0	10592	1203	42	4	174	4	NPL	1	182775301	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	10964504	182775301	66475320	8	26776											
TPR	7175	broad.mit.edu;bcgsc.ca	37	1	186324772	186324772	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	186324772	T	A	186324772	4	1	457	1	0	0	0	0	0	1	0	0	16428	1763	61	5	5218	5	TPR	1	186324772	Nonsense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	3549471	186324772	62925849	9	26777											
CYP1B1	1545	hgsc.bcm.edu;broad.mit.edu	37	2	38302357	38302357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	38302357	G	C	38302357	3	2	457	1	0	0	0	0	1	0	0	0	4153	1020	36	4	1464	4	CYP1B1	2	38302357	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		38302357	204897016	10	26778											
BOLA3	388962	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	74362686	74362686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	74362686	C	A	74362686	3	1	457	1	0	0	0	0	1	0	0	0	1488	913	32	4	40	4	BOLA3	2	74362686	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	36060329	74362686	168836687	11	26779											
BCL2L11	10018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	111921708	111921716	+	Frame_Shift_Del	DEL	AGGTATTTT	AGGTATTTT	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	AGGTATTTT	AGGTATTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	111921716	AGGTATTTT	-	111921708	7	5	457	1	0	1	0	1	0	0	0	0	1369	202	7	0	636	0	BCL2L11	2	111921708	Frame_Shift_Del	DEL	AGGTATTTT	TCGA-BQ-7048-01A-11D-1961-08	37559022	111921708	131277665	12	26780											
WDR33	55339	hgsc.bcm.edu	37	2	128474756	128474756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	128474756	G	A	128474756	3	1	457	1	0	0	0	0	1	0	0	0	17299	1232	43	2	1192	2	WDR33	2	128474756	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	16553048	128474756	114724617	13	26781											
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128526506	128526506	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	128526506	C	A	128526506	5	1	457	1	0	0	0	0	0	0	1	0	17299	492	17	4	4225	4	WDR33	2	128526506	Splice_Site	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	51750	128526506	114672867	14	26782											
RBM45	129831	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178977555	178977555	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	178977555	C	T	178977555	2	4	457	1	0	0	0	0	0	0	0	1	13152	535	19	1		1	RBM45	2	178977555	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	50451049	178977555	64221818	15	26783											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	230701700	230701702	+	Frame_Shift_Del	DEL	ACT	ACT	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	230701702	ACT	-	230701700	7	5	457	1	0	1	0	1	0	0	0	0	16568	289	10	0	5118	0	TRIP12	2	230701700	Frame_Shift_Del	DEL	ACT	TCGA-BQ-7048-01A-11D-1961-08	51724145	230701700	12497673	16	26784											
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	64084893	64084893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	64084893	A	G	64084893	3	3	457	1	0	0	0	0	1	0	0	0	12497	246	9	3	169	3	PRICKLE2	3	64084893	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08		64084893	133937537	17	26785											
DBR1	51163	broad.mit.edu	37	3	137892448	137892448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	137892448	T	C	137892448	3	2	457	1	0	0	0	0	1	0	0	0	4259	1609	56	3	1444	3	DBR1	3	137892448	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	73807555	137892448	60129982	18	26786											
SLC2A2	6514	broad.mit.edu;bcgsc.ca	37	3	170723087	170723087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	170723087	G	A	170723087	3	1	457	1	0	0	0	0	1	0	0	0	14557	1174	41	2	644	2	SLC2A2	3	170723087	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	32830639	170723087	27299343	19	26787											
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171394619	171394619	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	171394619	G	A	171394619	2	1	457	1	0	0	0	0	0	0	0	1	12052	1281	45	2		2	PLD1	3	171394619	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	671532	171394619	26627811	20	26788											
SEL1L3	23231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25806261	25806261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	25806261	A	T	25806261	3	4	457	1	0	0	0	0	1	0	0	0	14025	72	3	5	1780	5	SEL1L3	4	25806261	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08		25806261	165348015	21	26789											
STOX2	56977	broad.mit.edu	37	4	184931856	184931856	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	184931856	A	-	184931856	7	5	457	1	0	1	0	1	0	0	0	0	15332	304	11	0	1875	0	STOX2	4	184931856	Frame_Shift_Del	DEL	A	TCGA-BQ-7048-01A-11D-1961-08	159125595	184931856	6222420	22	26790											
ACSL1	2180	broad.mit.edu;ucsc.edu	37	4	185724472	185724472	+	Splice_Site	SNP	A	A	T	rs201598489	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	185724472	A	T	185724472	5	4	457	1	0	0	0	0	0	0	1	0	177	173	6	5	1979	5	ACSL1	4	185724472	Splice_Site	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	792616	185724472	5429804	23	26791											
FAM149A	25854	hgsc.bcm.edu	37	4	187088232	187088232	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	187088232	C	G	187088232	3	3	457	1	0	0	0	0	1	0	0	0	5459	709	25	4	1309	4	FAM149A	4	187088232	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	1363760	187088232	4066044	24	26792											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72151675	72151675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	72151675	G	A	72151675	3	1	457	1	0	0	0	0	1	0	0	0	16347	1348	47	2	294	2	TNPO1	5	72151675	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		72151675	108763585	25	26793											
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131007378	131007379	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	131007379	CT	-	131007378	7	5	457	1	0	1	0	1	0	0	0	0	5982	565	20	0	761	0	FNIP1	5	131007378	Frame_Shift_Del	DEL	CT	TCGA-BQ-7048-01A-11D-1961-08	58855703	131007378	49907882	26	26794											
FGF1	2246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141974869	141974869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	141974869	C	A	141974869	3	1	457	1	0	0	0	0	1	0	0	0	5845	565	20	4	17	4	FGF1	5	141974869	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	10967491	141974869	38940391	27	26795											
KIF13A	63971	broad.mit.edu;bcgsc.ca	37	6	17783900	17783900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	17783900	G	A	17783900	3	1	457	1	0	0	0	0	1	0	0	0	8281	1348	47	2	1965	2	KIF13A	6	17783900	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		17783900	153331167	28	26796											
UBR2	23304	broad.mit.edu	37	6	42611951	42611951	+	Splice_Site	DEL	G	G	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	42611951	G	-	42611951	8	5	457	1	0	1	0	1	0	0	1	0	16914	956	33	0	2317	0	UBR2	6	42611951	Splice_Site	DEL	G	TCGA-BQ-7048-01A-11D-1961-08	24828051	42611951	128503116	29	26797											
XPO5	57510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43541219	43541219	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	43541219	G	C	43541219	2	2	457	1	0	0	0	0	0	0	0	1	17459	1277	45	4		4	XPO5	6	43541219	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	929268	43541219	127573848	30	26798											
CDC5L	988	broad.mit.edu;bcgsc.ca	37	6	44390390	44390390	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	44390390	T	C	44390390	2	2	457	1	0	0	0	0	0	0	0	1	3084	1596	56	3		3	CDC5L	6	44390390	Silent	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	849171	44390390	126724677	31	26799											
TNFRSF21	27242	broad.mit.edu	37	6	47251682	47251682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	47251682	T	C	47251682	3	2	457	1	0	0	0	0	1	0	0	0	16307	1493	52	3	748	3	TNFRSF21	6	47251682	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	2861292	47251682	123863385	32	26800											
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150005370	150005370	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	150005370	G	T	150005370	2	4	457	1	0	0	0	0	0	0	0	1	8653	932	33	4		4	LATS1	6	150005370	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	102753688	150005370	21109697	33	26801											
ESR1	2099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152201893	152201893	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	152201893	A	G	152201893	2	3	457	1	0	0	0	0	0	0	0	1	5258	233	9	3		3	ESR1	6	152201893	Silent	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	2196523	152201893	18913174	34	26802											
MYCT1	80177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153043198	153043198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	153043198	G	T	153043198	3	4	457	1	0	0	0	0	1	0	0	0	10029	1377	48	4	524	4	MYCT1	6	153043198	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	841305	153043198	18071869	35	26803											
IPCEF1	26034	broad.mit.edu	37	6	154521109	154521109	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	154521109	C	G	154521109	2	3	457	1	0	0	0	0	0	0	0	1	7798	581	21	4		4	IPCEF1	6	154521109	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	1477911	154521109	16593958	36	26804											
TTLL2	83887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	167755036	167755036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	167755036	G	T	167755036	3	4	457	1	0	0	0	0	1	0	0	0	16739	942	33	4	1658	4	TTLL2	6	167755036	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	13233927	167755036	3360031	37	26805											
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	70255838	70255838	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	70255838	T	-	70255838	7	5	457	1	0	1	0	1	0	0	0	0	1225	1538	54	0	3855	0	AUTS2	7	70255838	Frame_Shift_Del	DEL	T	TCGA-BQ-7048-01A-11D-1961-08		70255838	88882825	38	26806											
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72988278	72988278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	72988278	G	A	72988278	3	1	457	1	0	0	0	0	1	0	0	0	15654	1232	43	2	927	2	TBL2	7	72988278	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	2732440	72988278	86150385	39	26807											
MFHAS1	9258	hgsc.bcm.edu	37	8	8750559	8750559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	8750559	T	C	8750559	3	2	457	1	0	0	0	0	1	0	0	0	9528	1435	50	3	3160	3	MFHAS1	8	8750559	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		8750559	137613463	40	26808											
MTUS1	57509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17581310	17581310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	17581310	A	G	17581310	3	3	457	1	0	0	0	0	1	0	0	0	9972	275	10	3	1859	3	MTUS1	8	17581310	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	8830751	17581310	128782712	41	26809											
CLTA	1211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	36211662	36211662	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	36211662	G	-	36211662	7	5	457	1	0	1	0	1	0	0	0	0	3566	1116	39	0	664	0	CLTA	9	36211662	Frame_Shift_Del	DEL	G	TCGA-BQ-7048-01A-11D-1961-08		36211662	105001769	42	26810											
TGFBR1	7046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101894937	101894937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	101894937	C	G	101894937	3	3	457	1	0	0	0	0	1	0	0	0	15833	623	22	4	500	4	TGFBR1	9	101894937	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	65683275	101894937	39318494	43	26811											
DAB2IP	153090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	124522288	124522288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	124522288	G	T	124522288	3	4	457	1	0	0	0	0	1	0	0	0	4221	1203	42	4	678	4	DAB2IP	9	124522288	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	22627351	124522288	16691143	44	26812											
COQ4	51117	bcgsc.ca	37	9	131095814	131095814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	131095814	C	A	131095814	3	1	457	1	0	0	0	0	1	0	0	0	3749	623	22	4	714	4	COQ4	9	131095814	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	6573526	131095814	10117617	45	26813											
NUP214	8021	bcgsc.ca	37	9	134004848	134004848	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	134004848	G	T	134004848	2	4	457	1	0	0	0	0	0	0	0	1	10769	1103	39	4		4	NUP214	9	134004848	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	2909034	134004848	7208583	46	26814											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61829643	61829643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	61829643	T	C	61829643	3	2	457	1	0	0	0	0	1	0	0	0	622	1696	59	3	2478	3	ANK3	10	61829643	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		61829643	73705104	47	26815											
SFTPD	6441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	81702148	81702148	+	Silent	SNP	G	G	C	rs2077117	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	81702148	G	C	81702148	2	2	457	1	0	0	0	0	0	0	0	1	14206	1335	47	4		4	SFTPD	10	81702148	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	19872505	81702148	53832599	48	26816											
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111878343	111878343	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	111878343	A	G	111878343	5	3	457	1	0	0	0	0	0	0	1	0	306	202	7	3	584	3	ADD3	10	111878343	Splice_Site	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	30176195	111878343	23656404	49	26817											
MICALCL	84953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	12316190	12316190	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	12316190	C	T	12316190	2	4	457	1	0	0	0	0	0	0	0	1	9579	477	17	2		2	MICALCL	11	12316190	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08		12316190	122690326	50	26818											
TTC17	55761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	43418965	43418965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	43418965	C	A	43418965	3	1	457	1	0	0	0	0	1	0	0	0	16696	797	28	4	868	4	TTC17	11	43418965	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	31102775	43418965	91587551	51	26819											
OR5T3	390154	broad.mit.edu;bcgsc.ca	37	11	56019938	56019938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	56019938	C	T	56019938	3	4	457	1	0	0	0	0	1	0	0	0	11190	623	22	2	265	2	OR5T3	11	56019938	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	12600973	56019938	78986578	52	26820											
C1QTNF5	114902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119210071	119210071	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	119210071	G	C	119210071	2	2	457	1	0	0	0	0	0	0	0	1	1968	1103	39	4		4	C1QTNF5	11	119210071	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	63190133	119210071	15796445	53	26821											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12302076	12302076	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	12302076	C	T	12302076	2	4	457	1	0	0	0	0	0	0	0	1	8969	581	21	2		2	LRP6	12	12302076	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08		12302076	121549819	54	26822											
C12orf54	121273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48888593	48888593	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	48888593	T	C	48888593	2	2	457	1	0	0	0	0	0	0	0	1	1701	1538	54	3		3	C12orf54	12	48888593	Silent	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	36586517	48888593	84963302	55	26823											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49437679	49437679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	49437679	A	G	49437679	3	3	457	1	0	0	0	0	1	0	0	0	9628	188	7	3	11454	3	MLL2	12	49437679	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	549086	49437679	84414216	56	26824											
CNOT2	4848	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	70704758	70704758	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	70704758	C	T	70704758	2	4	457	1	0	0	0	0	0	0	0	1	3621	489	17	2		2	CNOT2	12	70704758	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	21267079	70704758	63147137	57	26825											
EPSTI1	94240	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	43462629	43462629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	43462629	C	A	43462629	3	1	457	1	0	0	0	0	1	0	0	0	5200	912	32	4	246	4	EPSTI1	13	43462629	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08		43462629	71707249	58	26826											
KCTD4	386618	broad.mit.edu	37	13	45768267	45768269	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	TTA	TTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	45768269	TTA	-	45768267	7	5	457	1	0	1	0	1	0	0	0	0	8118	1725	60	0	347	0	KCTD4	13	45768267	In_Frame_Del	DEL	TTA	TCGA-BQ-7048-01A-11D-1961-08	2305638	45768267	69401611	59	26827											
POTEG	404785	broad.mit.edu;bcgsc.ca	37	14	19553567	19553567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	19553567	G	A	19553567	3	1	457	1	0	0	0	0	1	0	0	0	12273	1058	37	1	153	1	POTEG	14	19553567	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		19553567	87795973	60	26828											
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35872504	35872504	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	35872504	A	G	35872504	2	3	457	1	0	0	0	0	0	0	0	1	10384	175	7	3		3	NFKBIA	14	35872504	Silent	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	16318937	35872504	71477036	61	26829											
KLHDC1	122773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50196254	50196254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	50196254	C	G	50196254	3	3	457	1	0	0	0	0	1	0	0	0	8361	565	20	4	728	4	KLHDC1	14	50196254	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	14323750	50196254	57153286	62	26830											
ENTPD5	957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	74443764	74443765	+	Splice_Site	INS	-	-	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	74443765	-	A	74443764	8	5	457	1	0	1	1	0	0	0	1	0	5144	1536	53	0	806	0	ENTPD5	14	74443764	Splice_Site	INS	-	TCGA-BQ-7048-01A-11D-1961-08	24247510	74443764	32905776	63	26831											
ATP10A	57194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25959142	25959142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	25959142	C	A	25959142	3	1	457	1	0	0	0	0	1	0	0	0	1116	855	30	4	2524	4	ATP10A	15	25959142	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08		25959142	76572250	64	26832											
GABRG3	2567	broad.mit.edu	37	15	27777965	27777965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	27777965	T	C	27777965	3	2	457	1	0	0	0	0	1	0	0	0	6180	1609	56	3	1380	3	GABRG3	15	27777965	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	1818823	27777965	74753427	65	26833											
PLA2G4F	255189	broad.mit.edu	37	15	42444915	42444915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	42444915	C	-	42444915	7	5	457	1	0	1	0	1	0	0	0	0	12013	855	30	0	2033	0	PLA2G4F	15	42444915	Frame_Shift_Del	DEL	C	TCGA-BQ-7048-01A-11D-1961-08	14666950	42444915	60086477	66	26834											
MESDC2	23184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	81282037	81282037	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	81282037	G	A	81282037	2	1	457	1	0	0	0	0	0	0	0	1	9488	1079	38	1		1	MESDC2	15	81282037	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	38837122	81282037	21249355	67	26835											
ABCC12	94160	broad.mit.edu	37	16	48180262	48180262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	48180262	T	C	48180262	3	2	457	1	0	0	0	0	1	0	0	0	52	1406	49	3	4121	3	ABCC12	16	48180262	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		48180262	42174491	68	26836											
ZNF423	23090	broad.mit.edu;ucsc.edu	37	16	49670868	49670868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	49670868	T	A	49670868	3	1	457	1	0	0	0	0	1	0	0	0	17910	1609	56	5	1679	5	ZNF423	16	49670868	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	1490606	49670868	40683885	69	26837											
MAF	4094	hgsc.bcm.edu	37	16	79633040	79633040	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	79633040	C	G	79633040	3	3	457	1	0	0	0	0	1	0	0	0	9162	652	23	4	463	4	MAF	16	79633040	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	29962172	79633040	10721713	70	26838											
GFAP	2670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	42987523	42987523	+	Missense_Mutation	SNP	G	G	C	rs9908084	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	42987523	G	C	42987523	3	2	457	1	0	0	0	0	1	0	0	0	6344	1145	40	4	158	4	GFAP	17	42987523	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		42987523	38207687	71	26839											
HSF5	124535	broad.mit.edu;bcgsc.ca	37	17	56565509	56565509	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	56565509	G	A	56565509	4	1	457	1	0	0	0	0	0	1	0	0	7406	1299	45	2	1687	2	HSF5	17	56565509	Nonsense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	13577986	56565509	24629701	72	26840											
GPR142	350383	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72368139	72368139	+	Silent	SNP	C	C	A	rs143074832	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	72368139	C	A	72368139	2	1	457	1	0	0	0	0	0	0	0	1	6657	610	22	4		4	GPR142	17	72368139	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	15802630	72368139	8827071	73	26841											
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74158077	74158077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	74158077	C	A	74158077	4	1	457	1	0	0	0	0	0	1	0	0	13467	835	29	4	1280	4	RNF157	17	74158077	Nonsense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	1789938	74158077	7037133	74	26842											
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76115385	76115385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	76115385	G	C	76115385	3	2	457	1	0	0	0	0	1	0	0	0	16001	933	33	4	641	4	TMC6	17	76115385	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	1957308	76115385	5079825	75	26843											
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35617832	35617832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	35617832	G	T	35617832	3	4	457	1	0	0	0	0	1	0	0	0	8761	1203	42	4	907	4	LGI4	19	35617832	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		35617832	23511151	76	26844											
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44579218	44579218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	C	44579218	T	C	44579218	3	2	457	1	0	0	0	0	1	0	0	0	17864	1696	59	3	854	3	ZNF335	20	44579218	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		44579218	18446302	77	26845											
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50701575	50701575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	50701575	G	A	50701575	3	1	457	1	0	0	0	0	1	0	0	0	17664	1115	39	1	482	1	ZFP64	20	50701575	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	6122357	50701575	12323945	78	26846											
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62421455	62421455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	62421455	C	G	62421455	3	3	457	1	0	0	0	0	1	0	0	0	17559	855	30	4	1129	4	ZBTB46	20	62421455	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	11719880	62421455	604065	79	26847											
KRTAP27-1	643812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31709825	31709825	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	31709825	G	A	31709825	2	1	457	1	0	0	0	0	0	0	0	1	8551	1311	46	2		2	KRTAP27-1	21	31709825	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		31709825	16420070	80	26848											
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	32638551	32638551	+	Silent	SNP	G	G	A	rs202182190		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	A	32638551	G	A	32638551	2	1	457	1	0	0	0	0	0	0	0	1	15902	1136	40	1		1	TIAM1	21	32638551	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	928726	32638551	15491344	81	26849											
XKR3	150165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	17280836	17280836	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	17280836	G	T	17280836	2	4	457	1	0	0	0	0	0	0	0	1	17444	1280	45	4		4	XKR3	22	17280836	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		17280836	34023730	82	26850											
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24145544	24145544	+	Missense_Mutation	SNP	C	C	T	rs137986695		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	24145544	C	T	24145544	3	4	457	1	0	0	0	0	1	0	0	0	14787	623	22	2	581	2	SMARCB1	22	24145544	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	6864708	24145544	27159022	83	26851											
DRG1	4733	hgsc.bcm.edu;broad.mit.edu	37	22	31799189	31799189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	G	31799189	A	G	31799189	3	3	457	1	0	0	0	0	1	0	0	0	4763	202	7	3	351	3	DRG1	22	31799189	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	7653645	31799189	19505377	84	26852											
C1QTNF6	114904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37578392	37578392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	T	37578392	C	T	37578392	3	4	457	1	0	0	0	0	1	0	0	0	1969	893	31	1	167	1	C1QTNF6	22	37578392	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	5779203	37578392	13726174	85	26853											
MKL1	57591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	40816560	40816562	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	-	40816562	CCC	-	40816560	7	5	457	1	0	1	0	1	0	0	0	0	9608	855	30	0	1913	0	MKL1	22	40816560	In_Frame_Del	DEL	CCC	TCGA-BQ-7048-01A-11D-1961-08	3238168	40816560	10488006	86	26854											
ATAD3A	55210	hgsc.bcm.edu	37	1	1458174	1458174	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	G	1458174	C	G	1458174	2	3	458	1	0	0	0	0	0	0	0	1	1073	581	21	4		4	ATAD3A	1	1458174	Silent	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		1458174	247792447	1	26855											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155317614	155317614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	G	155317614	A	G	155317614	3	3	458	1	0	0	0	0	1	0	0	0	1041	333	12	3	1294	3	ASH1L	1	155317614	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	153859440	155317614	93933007	2	26856											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169076130	169076130	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	-	169076130	G	-	169076130	7	5	458	1	0	1	0	1	0	0	0	0	1132	933	33	0	65	0	ATP1B1	1	169076130	Frame_Shift_Del	DEL	G	TCGA-BQ-7050-01A-11D-1961-08	13758516	169076130	80174491	3	26857											
NEK7	140609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	198231718	198231718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	G	198231718	T	G	198231718	3	3	458	1	0	0	0	0	1	0	0	0	10336	1464	51	5	222	5	NEK7	1	198231718	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08	29155588	198231718	51018903	4	26858											
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132184844	132184844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	C	132184844	T	C	132184844	3	2	458	1	0	0	0	0	1	0	0	0	4634	1522	53	3	1964	3	DNAJC13	3	132184844	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08		132184844	65837586	5	26859											
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	142141468	142141468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	C	142141468	G	C	142141468	3	2	458	1	0	0	0	0	1	0	0	0	17471	1000	35	4	4337	4	XRN1	3	142141468	Missense_Mutation	SNP	G	TCGA-BQ-7050-01A-11D-1961-08	9956624	142141468	55880962	6	26860											
PDE5A	8654	broad.mit.edu	37	4	120463679	120463679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	C	120463679	T	C	120463679	3	2	458	1	0	0	0	0	1	0	0	0	11651	1435	50	3	1168	3	PDE5A	4	120463679	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08		120463679	70690597	7	26861											
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145836845	145836845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	A	145836845	G	A	145836845	3	1	458	1	0	0	0	0	1	0	0	0	15697	971	34	2	395	2	TCERG1	5	145836845	Missense_Mutation	SNP	G	TCGA-BQ-7050-01A-11D-1961-08		145836845	35078415	8	26862											
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu	37	6	159414935	159414935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	T	159414935	C	T	159414935	3	4	458	1	0	0	0	0	1	0	0	0	13718	855	30	2	1144	2	RSPH3	6	159414935	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		159414935	11700132	9	26863											
CAV1	857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116166677	116166677	+	Silent	SNP	C	C	T	rs201261029		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	T	116166677	C	T	116166677	2	4	458	1	0	0	0	0	0	0	0	1	2695	535	19	1		1	CAV1	7	116166677	Silent	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		116166677	42971986	10	26864											
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142568111	142568111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	G	142568111	A	G	142568111	3	3	458	1	0	0	0	0	1	0	0	0	5180	333	12	3	2806	3	EPHB6	7	142568111	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	26401434	142568111	16570552	11	26865											
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571035	149571035	+	Missense_Mutation	SNP	A	A	C	rs145697964		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	C	149571035	A	C	149571035	3	2	458	1	0	0	0	0	1	0	0	0	1176	333	12	5	30	5	ATP6V0E2	7	149571035	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	7002924	149571035	9567628	12	26866											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144940482	144940482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	G	144940482	A	G	144940482	3	3	458	1	0	0	0	0	1	0	0	0	5192	420	15	3	326	3	EPPK1	8	144940482	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08		144940482	1423540	13	26867											
NTRK2	4915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	87342656	87342656	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	G	87342656	C	G	87342656	3	3	458	1	0	0	0	0	1	0	0	0	10714	768	27	4	971	4	NTRK2	9	87342656	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		87342656	53870775	14	26868											
CYLC2	1539	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	105767702	105767702	+	Missense_Mutation	SNP	T	T	A	rs2298052	byfrequency;alternate_allele	TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	A	105767702	T	A	105767702	3	1	458	1	0	0	0	0	1	0	0	0	4144	1461	51	5	807	5	CYLC2	9	105767702	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08	18425046	105767702	35445729	15	26869											
FBXW5	54461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139837319	139837319	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	C	139837319	A	C	139837319	3	2	458	1	0	0	0	0	1	0	0	0	5775	246	9	5	1296	5	FBXW5	9	139837319	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	34069617	139837319	1376112	16	26870											
EXD3	54932	hgsc.bcm.edu	37	9	140247165	140247165	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	C	140247165	G	C	140247165	3	2	458	1	0	0	0	0	1	0	0	0	5301	1145	40	4	1734	4	EXD3	9	140247165	Missense_Mutation	SNP	G	TCGA-BQ-7050-01A-11D-1961-08	409846	140247165	966266	17	26871											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82875304	82875304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	T	82875304	C	T	82875304	3	4	458	1	0	0	0	0	1	0	0	0	11580	681	24	2	577	2	PCF11	11	82875304	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		82875304	52131212	18	26872											
RDX	5962	hgsc.bcm.edu;broad.mit.edu	37	11	110134893	110134893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	T	110134893	C	T	110134893	3	4	458	1	0	0	0	0	1	0	0	0	13211	835	29	2	1532	2	RDX	11	110134893	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08	27259589	110134893	24871623	19	26873											
PAN2	9924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56720460	56720460	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	C	56720460	T	C	56720460	2	2	458	1	0	0	0	0	0	0	0	1	11421	1683	59	3		3	PAN2	12	56720460	Silent	SNP	T	TCGA-BQ-7050-01A-11D-1961-08		56720460	77131435	20	26874											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	72017888	72017888	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	T	72017888	A	T	72017888	4	4	458	1	0	0	0	0	0	1	0	0	17645	372	13	5	1519	5	ZFC3H1	12	72017888	Nonsense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	15297428	72017888	61834007	21	26875											
PCCA	5095	ucsc.edu	37	13	100925449	100925449	+	Splice_Site	SNP	G	G	A	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	A	100925449	G	A	100925449	5	1	458	1	0	0	0	0	0	0	1	0	11511	985	34	2	960	2	PCCA	13	100925449	Splice_Site	SNP	G	TCGA-BQ-7050-01A-11D-1961-08		100925449	14244429	22	26876											
TTC8	123016	bcgsc.ca	37	14	89338026	89338026	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	T	89338026	G	T	89338026	4	4	458	1	0	0	0	0	0	1	0	0	16726	943	33	4	1229	4	TTC8	14	89338026	Nonsense_Mutation	SNP	G	TCGA-BQ-7050-01A-11D-1961-08		89338026	18011514	23	26877											
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	39882095	39882095	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	G	39882095	C	G	39882095	2	3	458	1	0	0	0	0	0	0	0	1	15865	581	21	4		4	THBS1	15	39882095	Silent	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		39882095	62649297	24	26878											
MYO9A	4649	broad.mit.edu	37	15	72146822	72146822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	C	72146822	T	C	72146822	3	2	458	1	0	0	0	0	1	0	0	0	10091	1609	56	3	1436	3	MYO9A	15	72146822	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08	32264727	72146822	30384570	25	26879											
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	56586514	56586514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	T	56586514	C	T	56586514	3	4	458	1	0	0	0	0	1	0	0	0	17984	652	23	1	997	1	ZNF532	18	56586514	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		56586514	21490734	26	26880											
ZNF440	126070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	11943483	11943485	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	-	11943485	GTT	-	11943483	7	5	458	1	0	1	0	1	0	0	0	0	17925	1029	36	0	1506	0	ZNF440	19	11943483	In_Frame_Del	DEL	GTT	TCGA-BQ-7050-01A-11D-1961-08		11943483	47185500	27	26881											
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39898403	39898403	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	C	39898403	T	C	39898403	2	2	458	1	0	0	0	0	0	0	0	1	17657	1567	55	3		3	ZFP36	19	39898403	Silent	SNP	T	TCGA-BQ-7050-01A-11D-1961-08	27954920	39898403	19230580	28	26882											
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52497088	52497088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	A	52497088	C	A	52497088	3	1	458	1	0	0	0	0	1	0	0	0	18052	478	17	4	958	4	ZNF615	19	52497088	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08	12598685	52497088	6631895	29	26883											
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2436173	2436173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	2436173	G	A	2436173	3	1	459	1	0	0	0	0	1	0	0	0	12045	1232	43	2	3858	2	PLCH2	1	2436173	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		2436173	246814448	1	26884											
MFN2	9927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	12061548	12061549	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	12061549	TT	-	12061548	7	5	459	1	0	1	0	1	0	0	0	0	9531	1609	56	0	933	0	MFN2	1	12061548	Frame_Shift_Del	DEL	TT	TCGA-BQ-7051-01A-12D-1961-08	9625375	12061548	237189073	2	26885											
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22214014	22214014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	22214014	C	A	22214014	3	1	459	1	0	0	0	0	1	0	0	0	7437	623	22	4	12678	4	HSPG2	1	22214014	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	10152466	22214014	227036607	3	26886											
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42048585	42048585	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	42048585	A	T	42048585	2	4	459	1	0	0	0	0	0	0	0	1	7195	349	13	5		5	HIVEP3	1	42048585	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	19834571	42048585	207202036	4	26887											
CYP4A11	1579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	47402352	47402352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	47402352	G	C	47402352	3	2	459	1	0	0	0	0	1	0	0	0	4185	942	33	4	1101	4	CYP4A11	1	47402352	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	5353767	47402352	201848269	5	26888											
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52902541	52902541	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	52902541	G	T	52902541	2	4	459	1	0	0	0	0	0	0	0	1	17592	1066	37	4		4	ZCCHC11	1	52902541	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	5500189	52902541	196348080	6	26889											
ZNF326	284695	broad.mit.edu;bcgsc.ca	37	1	90475714	90475714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	90475714	A	G	90475714	3	3	459	1	0	0	0	0	1	0	0	0	17858	101	4	3	709	3	ZNF326	1	90475714	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	37573173	90475714	158774907	7	26890											
MSTO1	55154	hgsc.bcm.edu	37	1	155581021	155581021	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	155581021	C	G	155581021	3	3	459	1	0	0	0	0	1	0	0	0	9901	507	18	4	319	4	MSTO1	1	155581021	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	65105307	155581021	93669600	8	26891											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180000535	180000535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	180000535	A	C	180000535	3	2	459	1	0	0	0	0	1	0	0	0	3256	247	9	5	3685	5	CEP350	1	180000535	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	24419514	180000535	69250086	9	26892											
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214556993	214556993	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	214556993	G	A	214556993	2	1	459	1	0	0	0	0	0	0	0	1	12794	1219	43	2		2	PTPN14	1	214556993	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	34556458	214556993	34693628	10	26893											
ZNF514	84874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95815880	95815880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	95815880	C	T	95815880	3	4	459	1	0	0	0	0	1	0	0	0	17971	710	25	2	856	2	ZNF514	2	95815880	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08		95815880	147383493	11	26894											
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109002781	109002781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	109002781	T	C	109002781	3	2	459	1	0	0	0	0	1	0	0	0	15391	1493	52	3	771	3	SULT1C4	2	109002781	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	13186901	109002781	134196592	12	26895											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu	37	2	109370389	109370389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	109370389	A	T	109370389	3	4	459	1	0	0	0	0	1	0	0	0	13041	449	16	5	2222	5	RANBP2	2	109370389	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	367608	109370389	133828984	13	26896											
RPRM	56475	broad.mit.edu;bcgsc.ca	37	2	154334999	154334999	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	154334999	C	T	154334999	2	4	459	1	0	0	0	0	0	0	0	1	13631	697	25	2		2	RPRM	2	154334999	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	44964610	154334999	88864374	14	26897											
BAZ2B	29994	ucsc.edu	37	2	160295143	160295143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	160295143	C	T	160295143	3	4	459	1	0	0	0	0	1	0	0	0	1332	864	30	2	5662	2	BAZ2B	2	160295143	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	5960144	160295143	82904230	15	26898											
MYO3B	140469	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171375969	171375969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	171375969	G	A	171375969	3	1	459	1	0	0	0	0	1	0	0	0	10084	1145	40	1	3612	1	MYO3B	2	171375969	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	11080826	171375969	71823404	16	26899											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098803	178098803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	178098803	C	A	178098803	3	1	459	1	0	0	0	0	1	0	0	0	10375	507	18	4	1591	4	NFE2L2	2	178098803	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	6722834	178098803	65100570	17	26900											
COPS7B	64708	hgsc.bcm.edu;broad.mit.edu	37	2	232663673	232663673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	232663673	A	G	232663673	3	3	459	1	0	0	0	0	1	0	0	0	3741	318	11	3	653	3	COPS7B	2	232663673	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	54564870	232663673	10535700	18	26901											
SLC22A13	9390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38317429	38317429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	38317429	T	C	38317429	3	2	459	1	0	0	0	0	1	0	0	0	14457	1580	55	3	1105	3	SLC22A13	3	38317429	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08		38317429	159705001	19	26902											
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45773632	45773632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	45773632	A	T	45773632	3	4	459	1	0	0	0	0	1	0	0	0	13816	69	3	5	1139	5	SACM1L	3	45773632	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	7456203	45773632	152248798	20	26903											
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50252997	50252997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	50252997	T	C	50252997	3	2	459	1	0	0	0	0	1	0	0	0	14618	1580	55	3	413	3	SLC38A3	3	50252997	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	4479365	50252997	147769433	21	26904											
PPM1M	132160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52282683	52282683	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	52282683	C	T	52282683	2	4	459	1	0	0	0	0	0	0	0	1	12355	813	29	2		2	PPM1M	3	52282683	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	2029686	52282683	145739747	22	26905											
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57827089	57827089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	57827089	T	C	57827089	3	2	459	1	0	0	0	0	1	0	0	0	14762	1551	54	3	420	3	SLMAP	3	57827089	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	5544406	57827089	140195341	23	26906											
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	64536694	64536703	+	Frame_Shift_Del	DEL	CACCACCTTG	CACCACCTTG	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CACCACCTTG	CACCACCTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	64536703	CACCACCTTG	-	64536694	7	5	459	1	0	1	0	1	0	0	0	0	273	465	17	0	1100	0	ADAMTS9	3	64536694	Frame_Shift_Del	DEL	CACCACCTTG	TCGA-BQ-7051-01A-12D-1961-08	6709605	64536694	133485736	24	26907											
KIAA1524	57650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108282018	108282018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	108282018	C	A	108282018	3	1	459	1	0	0	0	0	1	0	0	0	8246	913	32	4	1164	4	KIAA1524	3	108282018	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	43745324	108282018	89740412	25	26908											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu	37	3	129290142	129290142	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	129290142	C	G	129290142	3	3	459	1	0	0	0	0	1	0	0	0	12134	710	25	4	2512	4	PLXND1	3	129290142	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	21008124	129290142	68732288	26	26909											
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	436019	436019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	436019	A	C	436019	3	2	459	1	0	0	0	0	1	0	0	0	18134	101	4	5	538	5	ZNF721	4	436019	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		436019	190718257	27	26910											
NSUN7	79730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40778094	40778094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	40778094	C	A	40778094	3	1	459	1	0	0	0	0	1	0	0	0	10690	913	32	4	876	4	NSUN7	4	40778094	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	40342075	40778094	150376182	28	26911											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57861558	57861558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	57861558	C	A	57861558	3	1	459	1	0	0	0	0	1	0	0	0	12222	796	28	4	740	4	POLR2B	4	57861558	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	17083464	57861558	133292718	29	26912											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57891054	57891054	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	57891054	A	G	57891054	2	3	459	1	0	0	0	0	0	0	0	1	12222	436	16	3		3	POLR2B	4	57891054	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	29496	57891054	133263222	30	26913											
DHX29	54505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	54591351	54591351	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	54591351	A	G	54591351	2	3	459	1	0	0	0	0	0	0	0	1	4505	231	8	3		3	DHX29	5	54591351	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		54591351	126323909	31	26914											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66448594	66448594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	66448594	T	C	66448594	3	2	459	1	0	0	0	0	1	0	0	0	9334	1493	52	3	3653	3	MAST4	5	66448594	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	11857243	66448594	114466666	32	26915											
BDP1	55814	ucsc.edu	37	5	70858261	70858261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	70858261	G	A	70858261	3	1	459	1	0	0	0	0	1	0	0	0	1395	1175	41	2	7807	2	BDP1	5	70858261	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	4409667	70858261	110056999	33	26916											
CTNNA1	1495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138268291	138268291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	138268291	G	A	138268291	3	1	459	1	0	0	0	0	1	0	0	0	4014	1174	41	2	2385	2	CTNNA1	5	138268291	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	67410030	138268291	42646969	34	26917											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139864824	139864824	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	139864824	T	C	139864824	2	2	459	1	0	0	0	0	0	0	0	1	628	1432	50	3		3	ANKHD1	5	139864824	Silent	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	1596533	139864824	41050436	35	26918											
TMCO6	55374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140021512	140021512	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	140021512	G	A	140021512	2	1	459	1	0	0	0	0	0	0	0	1	16012	1306	46	2		2	TMCO6	5	140021512	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	156688	140021512	40893748	36	26919											
C6orf47	57827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31627425	31627425	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	31627425	A	G	31627425	2	3	459	1	0	0	0	0	0	0	0	1	2366	291	11	3		3	C6orf47	6	31627425	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		31627425	139487642	37	26920											
PHF1	5252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33380325	33380325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	33380325	A	T	33380325	3	4	459	1	0	0	0	0	1	0	0	0	11827	333	12	5	206	5	PHF1	6	33380325	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	1752900	33380325	137734742	38	26921											
NCR2	9436	broad.mit.edu	37	6	41303624	41303624	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	41303624	C	T	41303624	4	4	459	1	0	0	0	0	0	1	0	0	10245	760	27	1	12	1	NCR2	6	41303624	Nonsense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	7923299	41303624	129811443	39	26922											
GUCA1B	2979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42152609	42152609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	42152609	C	A	42152609	3	1	459	1	0	0	0	0	1	0	0	0	6896	855	30	4	59	4	GUCA1B	6	42152609	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	848985	42152609	128962458	40	26923											
SYNJ2	8871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	158450005	158450005	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	158450005	C	T	158450005	2	4	459	1	0	0	0	0	0	0	0	1	15465	842	30	2		2	SYNJ2	6	158450005	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	116297396	158450005	12665062	41	26924											
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21678590	21678590	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	21678590	C	A	21678590	4	1	459	1	0	0	0	0	0	1	0	0	4601	518	18	4	4976	4	DNAH11	7	21678590	Nonsense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08		21678590	137460073	42	26925											
OR2AE1	81392	broad.mit.edu	37	7	99474253	99474253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	99474253	A	G	99474253	3	3	459	1	0	0	0	0	1	0	0	0	10990	304	11	3	571	3	OR2AE1	7	99474253	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	77795663	99474253	59664410	43	26926											
ARMC10	83787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102724230	102724230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	102724230	A	G	102724230	3	3	459	1	0	0	0	0	1	0	0	0	950	64	3	3	356	3	ARMC10	7	102724230	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	3249977	102724230	56414433	44	26927											
ZNF862	643641	broad.mit.edu	37	7	149559260	149559260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	149559260	C	A	149559260	3	1	459	1	0	0	0	0	1	0	0	0	18207	652	23	4	3037	4	ZNF862	7	149559260	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	46835030	149559260	9579403	45	26928											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151880116	151880116	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	151880116	A	-	151880116	7	5	459	1	0	1	0	1	0	0	0	0	9629	359	13	0	9627	0	MLL3	7	151880116	Frame_Shift_Del	DEL	A	TCGA-BQ-7051-01A-12D-1961-08	2320856	151880116	7258547	46	26929											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55534829	55534829	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	55534829	A	G	55534829	2	3	459	1	0	0	0	0	0	0	0	1	13545	117	5	3		3	RP1	8	55534829	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		55534829	90829193	47	26930											
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	98943606	98943609	+	Frame_Shift_Del	DEL	CTAA	CTAA	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CTAA	CTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	98943609	CTAA	-	98943606	7	5	459	1	0	1	0	1	0	0	0	0	9341	680	24	0	574	0	MATN2	8	98943606	Frame_Shift_Del	DEL	CTAA	TCGA-BQ-7051-01A-12D-1961-08	43408777	98943606	47420416	48	26931											
POP1	10940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	99152324	99152324	+	Nonsense_Mutation	SNP	G	G	T	rs184169115	alternate_allele	TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	99152324	G	T	99152324	4	4	459	1	0	0	0	0	0	1	0	0	12258	1175	41	4	1415	4	POP1	8	99152324	Nonsense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	208718	99152324	47211698	49	26932											
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	142238284	142238284	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	142238284	G	A	142238284	4	1	459	1	0	0	0	0	0	1	0	0	14656	1299	45	2	2346	2	SLC45A4	8	142238284	Nonsense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	43085960	142238284	4125738	50	26933											
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3206029	3206029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	3206029	G	A	3206029	3	1	459	1	0	0	0	0	1	0	0	0	11960	1174	41	2	2518	2	PITRM1	10	3206029	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		3206029	132328718	51	26934											
MCM10	55388	hgsc.bcm.edu	37	10	13251301	13251301	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	13251301	C	G	13251301	3	3	459	1	0	0	0	0	1	0	0	0	9392	738	26	4	2693	4	MCM10	10	13251301	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	10045272	13251301	122283446	52	26935											
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	51586276	51586276	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	51586276	A	T	51586276	2	4	459	1	0	0	0	0	0	0	0	1	10238	436	16	5		5	NCOA4	10	51586276	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	38334975	51586276	83948471	53	26936											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89717669	89717669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	89717669	A	G	89717669	3	3	459	1	0	0	0	0	1	0	0	0	12748	159	6	3	720	3	PTEN	10	89717669	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	38131393	89717669	45817078	54	26937											
DRD4	1815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	639919	639919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	639919	G	A	639919	3	1	459	1	0	0	0	0	1	0	0	0	4761	1261	44	2	680	2	DRD4	11	639919	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		639919	134366597	55	26938											
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55110978	55110978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	55110978	T	C	55110978	3	2	459	1	0	0	0	0	1	0	0	0	11048	1406	49	3	304	3	OR4A16	11	55110978	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	54471059	55110978	79895538	56	26939											
BAD	572	hgsc.bcm.edu	37	11	64039200	64039200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	64039200	T	C	64039200	3	2	459	1	0	0	0	0	1	0	0	0	1285	1551	54	3	251	3	BAD	11	64039200	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	8928222	64039200	70967316	57	26940											
SF3B2	10992	hgsc.bcm.edu	37	11	65819834	65819859	+	Frame_Shift_Del	DEL	CGCGCGCCTTCCTGCGGCTAAGATGG	CGCGCGCCTTCCTGCGGCTAAGATGG	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CGCGCGCCTTCCTGCGGCTAAGATGG	CGCGCGCCTTCCTGCGGCTAAGATGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	65819859	CGCGCGCCTTCCTGCGGCTAAGATGG	-	65819834	7	5	459	1	0	1	0	1	0	0	0	0	14164	899	31	0		0	SF3B2	11	65819834	Frame_Shift_Del	DEL	CGCGCGCCTTCCTGCGGCTAAGATGG	TCGA-BQ-7051-01A-12D-1961-08	1780634	65819834	69186682	58	26941											
PAK1	5058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	77047284	77047284	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	77047284	T	-	77047284	7	5	459	1	0	1	0	1	0	0	0	0	11406	1722	60	0	442	0	PAK1	11	77047284	Frame_Shift_Del	DEL	T	TCGA-BQ-7051-01A-12D-1961-08	11227450	77047284	57959232	59	26942											
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118250228	118250228	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	118250228	C	T	118250228	4	4	459	1	0	0	0	0	0	1	0	0	16894	827	29	2	1698	2	UBE4A	11	118250228	Nonsense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	41202944	118250228	16756288	60	26943											
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119044337	119044337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	119044337	C	T	119044337	3	4	459	1	0	0	0	0	1	0	0	0	10492	507	18	2	393	2	NLRX1	11	119044337	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	794109	119044337	15962179	61	26944											
TRIM29	23650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119988941	119988941	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	119988941	G	A	119988941	2	1	459	1	0	0	0	0	0	0	0	1	16515	933	33	2		2	TRIM29	11	119988941	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	944604	119988941	15017575	62	26945											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2909052	2909052	+	Silent	SNP	A	A	G	rs201311104		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	2909052	A	G	2909052	2	3	459	1	0	0	0	0	0	0	0	1	5917	11	1	3		3	FKBP4	12	2909052	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		2909052	130942843	63	26946											
DPPA3	359787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7867786	7867786	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	7867786	T	A	7867786	2	1	459	1	0	0	0	0	0	0	0	1	4737	1538	54	5		5	DPPA3	12	7867786	Silent	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	4958734	7867786	125984109	64	26947											
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41323760	41323760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	41323760	A	G	41323760	3	3	459	1	0	0	0	0	1	0	0	0	3642	72	3	3	681	3	CNTN1	12	41323760	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	33455974	41323760	92528135	65	26948											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu	37	12	43823478	43823478	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	43823478	A	-	43823478	7	5	459	1	0	1	0	1	0	0	0	0	266	372	13	0	2364	0	ADAMTS20	12	43823478	Frame_Shift_Del	DEL	A	TCGA-BQ-7051-01A-12D-1961-08	2499718	43823478	90028417	66	26949											
CCNT1	904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49087909	49087909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	49087909	G	T	49087909	3	4	459	1	0	0	0	0	1	0	0	0	2936	1174	41	4	1096	4	CCNT1	12	49087909	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	5264431	49087909	84763986	67	26950											
KRT80	144501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52579248	52579248	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	52579248	C	G	52579248	3	3	459	1	0	0	0	0	1	0	0	0	8501	864	30	4	1001	4	KRT80	12	52579248	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	3491339	52579248	81272647	68	26951											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	67699344	67699344	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	67699344	G	A	67699344	2	1	459	1	0	0	0	0	0	0	0	1	2617	1281	45	2		2	CAND1	12	67699344	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	15120096	67699344	66152551	69	26952											
DCLK1	9201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	36700222	36700222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	36700222	G	A	36700222	3	1	459	1	0	0	0	0	1	0	0	0	4293	1087	38	1	2204	1	DCLK1	13	36700222	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		36700222	78469656	70	26953											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39450406	39450406	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	39450406	T	G	39450406	3	3	459	1	0	0	0	0	1	0	0	0	6052	1522	53	5	8509	5	FREM2	13	39450406	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	2750184	39450406	75719472	71	26954											
KBTBD6	89890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	41705610	41705612	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	41705612	CAC	-	41705610	7	5	459	1	0	1	0	1	0	0	0	0	8004	813	29	0	990	0	KBTBD6	13	41705610	In_Frame_Del	DEL	CAC	TCGA-BQ-7051-01A-12D-1961-08	2255204	41705610	73464268	72	26955											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20845481	20845481	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	20845481	G	A	20845481	2	1	459	1	0	0	0	0	0	0	0	1	15771	962	34	2		2	TEP1	14	20845481	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		20845481	86504059	73	26956											
PNP	4860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20944608	20944608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	20944608	C	T	20944608	3	4	459	1	0	0	0	0	1	0	0	0	12170	565	20	2	740	2	PNP	14	20944608	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	99127	20944608	86404932	74	26957											
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24626550	24626550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	24626550	C	T	24626550	3	4	459	1	0	0	0	0	1	0	0	0	13500	536	19	1	2603	1	RNF31	14	24626550	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	3681942	24626550	82722990	75	26958											
KIAA0391	9692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35592664	35592664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	35592664	T	G	35592664	3	3	459	1	0	0	0	0	1	0	0	0	8179	1461	51	5	215	5	KIAA0391	14	35592664	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	10966114	35592664	71756876	76	26959											
VTI1B	10490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68118141	68118141	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	68118141	C	T	68118141	2	4	459	1	0	0	0	0	0	0	0	1	17248	581	21	2		2	VTI1B	14	68118141	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	32525477	68118141	39231399	77	26960											
HHIPL1	84439	hgsc.bcm.edu	37	14	100119115	100119115	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	100119115	C	G	100119115	4	3	459	1	0	0	0	0	0	1	0	0	7100	576	20	4	816	4	HHIPL1	14	100119115	Nonsense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	32000974	100119115	7230425	78	26961											
COX5A	9377	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75221461	75221461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	75221461	A	-	75221461	7	5	459	1	0	1	0	1	0	0	0	0	3774	378	14	0	251	0	COX5A	15	75221461	Frame_Shift_Del	DEL	A	TCGA-BQ-7051-01A-12D-1961-08		75221461	27309931	79	26962											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75664533	75664533	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	75664533	G	A	75664533	2	1	459	1	0	0	0	0	0	0	0	1	14338	1310	46	2		2	SIN3A	15	75664533	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	443072	75664533	26866859	80	26963											
GUCY2D	3000	ucsc.edu	37	17	7919110	7919110	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	7919110	G	A	7919110	2	1	459	1	0	0	0	0	0	0	0	1	6904	1364	48	2		2	GUCY2D	17	7919110	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		7919110	73276100	81	26964											
SLC46A1	113235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	26731859	26731859	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	-	26731859	C	-	26731859	7	5	459	1	0	1	0	1	0	0	0	0	14657	855	30	0	540	0	SLC46A1	17	26731859	Frame_Shift_Del	DEL	C	TCGA-BQ-7051-01A-12D-1961-08	18812749	26731859	54463351	82	26965											
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26911390	26911390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	26911390	A	G	26911390	3	3	459	1	0	0	0	0	1	0	0	0	14994	304	11	3	1363	3	SPAG5	17	26911390	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	179531	26911390	54283820	83	26966											
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	38938378	38938378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	38938378	A	G	38938378	3	3	459	1	0	0	0	0	1	0	0	0	8471	14	1	3	1043	3	KRT27	17	38938378	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	12026988	38938378	42256832	84	26967											
COL1A1	1277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48275830	48275830	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	48275830	C	G	48275830	3	3	459	1	0	0	0	0	1	0	0	0	3679	912	32	4	4071	4	COL1A1	17	48275830	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	9337452	48275830	32919380	85	26968											
DYNLL2	140735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56164457	56164457	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	56164457	T	A	56164457	2	1	459	1	0	0	0	0	0	0	0	1	4851	1567	55	5		5	DYNLL2	17	56164457	Silent	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	7888627	56164457	25030753	86	26969											
HEXDC	284004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80382347	80382347	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	80382347	T	C	80382347	2	2	459	1	0	0	0	0	0	0	0	1	7082	1538	54	3		3	HEXDC	17	80382347	Silent	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	24217890	80382347	812863	87	26970											
ZNF521	25925	broad.mit.edu	37	18	22902006	22902006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	22902006	G	C	22902006	3	2	459	1	0	0	0	0	1	0	0	0	17977	1280	45	4	3773	4	ZNF521	18	22902006	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		22902006	55175242	88	26971											
STXBP2	6813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7712265	7712265	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	7712265	A	T	7712265	3	4	459	1	0	0	0	0	1	0	0	0	15365	246	9	5	1634	5	STXBP2	19	7712265	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		7712265	51416718	89	26972											
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	11312640	11312640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	11312640	C	A	11312640	3	1	459	1	0	0	0	0	1	0	0	0	4693	796	28	4	550	4	DOCK6	19	11312640	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	3600375	11312640	47816343	90	26973											
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11312680	11312680	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	11312680	G	C	11312680	3	2	459	1	0	0	0	0	1	0	0	0	4693	1116	39	4	590	4	DOCK6	19	11312680	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	40	11312680	47816303	91	26974											
OR7A17	26333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14991895	14991895	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	14991895	G	A	14991895	2	1	459	1	0	0	0	0	0	0	0	1	11222	1277	45	2		2	OR7A17	19	14991895	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	3679215	14991895	44137088	92	26975											
USHBP1	83878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17362478	17362478	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	17362478	C	G	17362478	3	3	459	1	0	0	0	0	1	0	0	0	17049	768	27	4	284	4	USHBP1	19	17362478	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	2370583	17362478	41766505	93	26976											
CRTC1	23373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18876245	18876245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	18876245	C	G	18876245	3	3	459	1	0	0	0	0	1	0	0	0	3901	506	18	4	1004	4	CRTC1	19	18876245	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	1513767	18876245	40252738	94	26977											
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	20003291	20003291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	20003291	C	T	20003291	3	4	459	1	0	0	0	0	1	0	0	0	17809	855	30	2	1249	2	ZNF253	19	20003291	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	1127046	20003291	39125692	95	26978											
KIR3DL2	3812	bcgsc.ca	37	19	55362679	55362679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	55362679	C	A	55362679	3	1	459	1	0	0	0	0	1	0	0	0	8328	912	32	4	45	4	KIR3DL2	19	55362679	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	35359388	55362679	3766304	96	26979											
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57037192	57037192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	57037192	T	C	57037192	3	2	459	1	0	0	0	0	1	0	0	0	17942	1580	55	3	1770	3	ZNF471	19	57037192	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	1674513	57037192	2091791	97	26980											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	41100970	41100970	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	41100970	G	A	41100970	2	1	459	1	0	0	0	0	0	0	0	1	12825	929	33	2		2	PTPRT	20	41100970	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		41100970	21924550	98	26981											
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62366823	62366823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	62366823	T	C	62366823	3	2	459	1	0	0	0	0	1	0	0	0	17686	1580	55	3	1382	3	ZGPAT	20	62366823	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	21265853	62366823	658697	99	26982											
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32002357	32002357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	32002357	G	C	32002357	3	2	459	1	0	0	0	0	1	0	0	0	14169	1174	41	4	2176	4	SFI1	22	32002357	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		32002357	19302209	100	26983											
C1QTNF6	114904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37578251	37578251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	37578251	G	C	37578251	3	2	459	1	0	0	0	0	1	0	0	0	1969	1000	35	4	26	4	C1QTNF6	22	37578251	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	5575894	37578251	13726315	101	26984											
ARFGAP3	26286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	43213794	43213794	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	G	43213794	A	G	43213794	2	3	459	1	0	0	0	0	0	0	0	1	851	358	13	3		3	ARFGAP3	22	43213794	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	5635543	43213794	8090772	102	26985											
SYN1	6853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47432308	47432308	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	C	47432308	G	C	47432308	2	2	459	1	0	0	0	0	0	0	0	1	15452	1335	47	4		4	SYN1	23	47432308	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		47432308	107838252	103	26986											
RRAGB	10325	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	55744773	55744773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	55744773	G	A	55744773	3	1	459	1	0	0	0	0	1	0	0	0	13686	1290	45	2	15	2	RRAGB	23	55744773	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	8312465	55744773	99525787	104	26987											
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	65390505	65390505	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	T	65390505	C	T	65390505	2	4	459	1	0	0	0	0	0	0	0	1	7061	697	25	2		2	HEPH	23	65390505	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	9645732	65390505	89880055	105	26988											
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	130215818	130215818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	A	130215818	G	A	130215818	3	1	459	1	0	0	0	0	1	0	0	0	883	1145	40	1	181	1	ARHGAP36	23	130215818	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	64825313	130215818	25054742	106	26989											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16258648	16258648	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	16258648	T	C	16258648	2	2	460	1	0	0	0	0	0	0	0	1	15050	1567	55	3		3	SPEN	1	16258648	Silent	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		16258648	232991973	1	26990											
MYSM1	114803	broad.mit.edu	37	1	59125680	59125680	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	59125680	A	G	59125680	2	3	460	1	0	0	0	0	0	0	0	1	10108	98	4	3		3	MYSM1	1	59125680	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	42867032	59125680	190124941	2	26991											
CD84	8832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160523192	160523192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	160523192	A	G	160523192	3	3	460	1	0	0	0	0	1	0	0	0	3044	43	2	3	321	3	CD84	1	160523192	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	101397512	160523192	88727429	3	26992											
KCNIP3	30818	hgsc.bcm.edu	37	2	96012772	96012772	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	96012772	G	C	96012772	3	2	460	1	0	0	0	0	1	0	0	0	8048	1203	42	4	196	4	KCNIP3	2	96012772	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		96012772	147186601	4	26993											
ADRA2B	151	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96781259	96781259	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	96781259	C	T	96781259	2	4	460	1	0	0	0	0	0	0	0	1	338	680	24	2		2	ADRA2B	2	96781259	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	768487	96781259	146418114	5	26994											
TTN	7273	hgsc.bcm.edu	37	2	179611917	179611917	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	179611917	T	C	179611917	2	2	460	1	0	0	0	0	0	0	0	1	16747	1509	53	3		3	TTN	2	179611917	Silent	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	82830658	179611917	63587456	6	26995											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197767380	197767380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	197767380	C	T	197767380	3	4	460	1	0	0	0	0	1	0	0	0	11784	855	30	2	2124	2	PGAP1	2	197767380	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	18155463	197767380	45431993	7	26996											
LRRFIP1	9208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	238636568	238636568	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	238636568	G	C	238636568	3	2	460	1	0	0	0	0	1	0	0	0	9034	942	33	4	534	4	LRRFIP1	2	238636568	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	40869188	238636568	4562805	8	26997											
NKIRAS1	28512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	23942484	23942484	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	23942484	G	A	23942484	4	1	460	1	0	0	0	0	0	1	0	0	10451	1124	39	1	435	1	NKIRAS1	3	23942484	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		23942484	174079946	9	26998											
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51457622	51457622	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	51457622	C	G	51457622	2	3	460	1	0	0	0	0	0	0	0	1	17197	726	26	4		4	VPRBP	3	51457622	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	27515138	51457622	146564808	10	26999											
GMPS	8833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	155654202	155654202	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	155654202	A	T	155654202	3	4	460	1	0	0	0	0	1	0	0	0	6505	188	7	5	1941	5	GMPS	3	155654202	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	104196580	155654202	42368228	11	27000											
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu	37	3	169940480	169940480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	169940480	G	A	169940480	3	1	460	1	0	0	0	0	1	0	0	0	12524	971	34	2	25	2	PRKCI	3	169940480	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	14286278	169940480	28081950	12	27001											
MAP3K13	9175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185146747	185146747	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	185146747	C	T	185146747	2	4	460	1	0	0	0	0	0	0	0	1	9254	697	25	2		2	MAP3K13	3	185146747	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	15206267	185146747	12875683	13	27002											
DOK7	285489	broad.mit.edu	37	4	3478168	3478168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	3478168	T	C	3478168	3	2	460	1	0	0	0	0	1	0	0	0	4704	1435	50	3	445	3	DOK7	4	3478168	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		3478168	187676108	14	27003											
WFS1	7466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	6303094	6303094	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	6303094	C	T	6303094	2	4	460	1	0	0	0	0	0	0	0	1	17372	825	29	2		2	WFS1	4	6303094	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	2824926	6303094	184851182	15	27004											
ADAMTS3	9508	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	73280662	73280662	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	73280662	T	A	73280662	3	1	460	1	0	0	0	0	1	0	0	0	267	1606	56	5	3162	5	ADAMTS3	4	73280662	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	66977568	73280662	117873614	16	27005											
MAML3	55534	hgsc.bcm.edu;broad.mit.edu	37	4	140811108	140811108	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	140811108	C	T	140811108	2	4	460	1	0	0	0	0	0	0	0	1	9214	796	28	2		2	MAML3	4	140811108	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	67530446	140811108	50343168	17	27006											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	151935707	151935707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	151935707	C	A	151935707	3	1	460	1	0	0	0	0	1	0	0	0	8938	681	24	4	8731	4	LRBA	4	151935707	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	11124599	151935707	39218569	18	27007											
TRIM2	23321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	154237027	154237027	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	-	154237027	G	-	154237027	7	5	460	1	0	1	0	1	0	0	0	0	16506	1116	39	0	1688	0	TRIM2	4	154237027	Frame_Shift_Del	DEL	G	TCGA-BQ-7053-01A-11D-1961-08	2301320	154237027	36917249	19	27008											
PLEKHG4B	153478	hgsc.bcm.edu	37	5	163211	163211	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	163211	A	G	163211	2	3	460	1	0	0	0	0	0	0	0	1	12079	146	6	3		3	PLEKHG4B	5	163211	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08		163211	180752049	20	27009											
SLC6A18	348932	broad.mit.edu	37	5	1245991	1245991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	1245991	T	G	1245991	3	3	460	1	0	0	0	0	1	0	0	0	14694	1551	54	5	1731	5	SLC6A18	5	1245991	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	1082780	1245991	179669269	21	27010											
XRCC4	7518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82406899	82406899	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	82406899	G	T	82406899	2	4	460	1	0	0	0	0	0	0	0	1	17467	1161	41	4		4	XRCC4	5	82406899	Silent	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	81160908	82406899	98508361	22	27011											
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	96139212	96139212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	96139212	G	A	96139212	3	1	460	1	0	0	0	0	1	0	0	0	5205	1000	35	2	2512	2	ERAP1	5	96139212	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	13732313	96139212	84776048	23	27012											
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	129030431	129030431	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	129030431	T	G	129030431	3	3	460	1	0	0	0	0	1	0	0	0	264	1696	59	5	2893	5	ADAMTS19	5	129030431	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	32891219	129030431	51884829	24	27013											
LY6G6F	259215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31677862	31677862	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	31677862	A	T	31677862	3	4	460	1	0	0	0	0	1	0	0	0	9103	333	12	5	720	5	LY6G6F	6	31677862	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08		31677862	139437205	25	27014											
GSTA2	2939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52617715	52617715	+	Missense_Mutation	SNP	T	T	A	rs200252041	alternate_allele	TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	52617715	T	A	52617715	3	1	460	1	0	0	0	0	1	0	0	0	6838	1606	56	5	329	5	GSTA2	6	52617715	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	20939853	52617715	118497352	26	27015											
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	75975041	75975042	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	-	75975042	AT	-	75975041	7	5	460	1	0	1	0	1	0	0	0	0	16165	217	8	0	746	0	TMEM30A	6	75975041	Frame_Shift_Del	DEL	AT	TCGA-BQ-7053-01A-11D-1961-08	23357326	75975041	95140026	27	27016											
CPVL	54504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	29135764	29135764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	29135764	G	T	29135764	3	4	460	1	0	0	0	0	1	0	0	0	3837	1029	36	4	1112	4	CPVL	7	29135764	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		29135764	130002899	28	27017											
POMZP3	22932	hgsc.bcm.edu	37	7	76255360	76255360	+	Missense_Mutation	SNP	G	G	C	rs62476652	bycluster	TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	76255360	G	C	76255360	3	2	460	1	0	0	0	0	1	0	0	0	12254	933	33	4	568	4	POMZP3	7	76255360	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	47119596	76255360	82883303	29	27018											
FZD1	8321	hgsc.bcm.edu	37	7	90894862	90894862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	90894862	G	C	90894862	3	2	460	1	0	0	0	0	1	0	0	0	6135	1087	38	4	669	4	FZD1	7	90894862	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	14639502	90894862	68243801	30	27019											
ASH2L	9070	broad.mit.edu;bcgsc.ca	37	8	37963231	37963231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	37963231	C	T	37963231	3	4	460	1	0	0	0	0	1	0	0	0	1042	739	26	2	165	2	ASH2L	8	37963231	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08		37963231	108400791	31	27020											
EIF3E	3646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	109215296	109215296	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	109215296	A	T	109215296	2	4	460	1	0	0	0	0	0	0	0	1	5017	126	5	5		5	EIF3E	8	109215296	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	71252065	109215296	37148726	32	27021											
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	123965471	123965471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	123965471	A	G	123965471	3	3	460	1	0	0	0	0	1	0	0	0	17688	275	10	3	1723	3	ZHX2	8	123965471	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	14750175	123965471	22398551	33	27022											
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144811207	144811207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	144811207	A	G	144811207	3	3	460	1	0	0	0	0	1	0	0	0	5647	275	10	3	2880	3	FAM83H	8	144811207	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	20845736	144811207	1552815	34	27023											
CNTNAP3	79937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	39140600	39140600	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	39140600	G	A	39140600	4	1	460	1	0	0	0	0	0	1	0	0	3650	1124	39	1	2126	1	CNTNAP3	9	39140600	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		39140600	102072831	35	27024											
INVS	27130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	103059359	103059359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	103059359	C	A	103059359	3	1	460	1	0	0	0	0	1	0	0	0	7794	623	22	4	3001	4	INVS	9	103059359	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	63918759	103059359	38154072	36	27025											
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	53227571	53227571	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	53227571	C	G	53227571	3	3	460	1	0	0	0	0	1	0	0	0	12532	564	20	4	847	4	PRKG1	10	53227571	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08		53227571	82307176	37	27026											
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	73406335	73406335	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	73406335	C	T	73406335	2	4	460	1	0	0	0	0	0	0	0	1	3110	547	19	1		1	CDH23	10	73406335	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	20178764	73406335	62128412	38	27027											
DGKZ	8525	ucsc.edu;bcgsc.ca	37	11	46401423	46401423	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	46401423	G	T	46401423	4	4	460	1	0	0	0	0	0	1	0	0	4476	1059	37	4	3849	4	DGKZ	11	46401423	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		46401423	88605093	39	27028											
SSSCA1	10534	ucsc.edu	37	11	65338205	65338205	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	65338205	C	T	65338205	2	4	460	1	0	0	0	0	0	0	0	1	15207	755	27	1		1	SSSCA1	11	65338205	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	18936782	65338205	69668311	40	27029											
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66636376	66636376	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	66636376	G	T	66636376	4	4	460	1	0	0	0	0	0	1	0	0	11504	1024	36	4	2629	4	PC	11	66636376	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	1298171	66636376	68370140	41	27030											
ALDH3B2	222	ucsc.edu	37	11	67432821	67432821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	67432821	C	T	67432821	3	4	460	1	0	0	0	0	1	0	0	0	500	652	23	1	532	1	ALDH3B2	11	67432821	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	796445	67432821	67573695	42	27031											
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102147162	102147162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	102147162	T	C	102147162	3	2	460	1	0	0	0	0	1	0	0	0	6552	1551	54	3	192	3	GNPTAB	12	102147162	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		102147162	31704733	43	27032											
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113565934	113565934	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	113565934	T	A	113565934	3	1	460	1	0	0	0	0	1	0	0	0	13076	1696	59	5	2318	5	RASAL1	12	113565934	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	11418772	113565934	20285961	44	27033											
PLBD2	196463	hgsc.bcm.edu	37	12	113826272	113826272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	113826272	C	G	113826272	3	3	460	1	0	0	0	0	1	0	0	0	12033	709	25	4	1657	4	PLBD2	12	113826272	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	260338	113826272	20025623	45	27034											
TBX3	6926	broad.mit.edu	37	12	115112487	115112488	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	-	115112488	GC	-	115112487	7	5	460	1	0	1	0	1	0	0	0	0	15671	971	34	0	986	0	TBX3	12	115112487	Frame_Shift_Del	DEL	GC	TCGA-BQ-7053-01A-11D-1961-08	1286215	115112487	18739408	46	27035											
EP400	57634	broad.mit.edu	37	12	132445250	132445251	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	132445251	-	G	132445250	7	5	460	1	0	1	1	0	0	0	0	0	5151	652	23	0	88	0	EP400	12	132445250	Frame_Shift_Ins	INS	-	TCGA-BQ-7053-01A-11D-1961-08	17332763	132445250	1406645	47	27036											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	23906994	23906994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	23906994	T	C	23906994	3	2	460	1	0	0	0	0	1	0	0	0	13817	1493	52	3	2722	3	SACS	13	23906994	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		23906994	91262884	48	27037											
KBTBD6	89890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	41706340	41706340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	41706340	C	T	41706340	3	4	460	1	0	0	0	0	1	0	0	0	8004	739	26	2	1720	2	KBTBD6	13	41706340	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	17799346	41706340	73463538	49	27038											
FSCB	84075	hgsc.bcm.edu	37	14	44974805	44974805	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	44974805	A	G	44974805	2	3	460	1	0	0	0	0	0	0	0	1	6073	407	15	3		3	FSCB	14	44974805	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08		44974805	62374735	50	27039											
CHRFAM7A	89832	hgsc.bcm.edu;broad.mit.edu	37	15	30665308	30665308	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	-	30665308	A	-	30665308	7	5	460	1	0	1	0	1	0	0	0	0	3377	243	9	0	1057	0	CHRFAM7A	15	30665308	Frame_Shift_Del	DEL	A	TCGA-BQ-7053-01A-11D-1961-08		30665308	71866084	51	27040											
ACTC1	70	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35083348	35083348	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	35083348	G	T	35083348	2	4	460	1	0	0	0	0	0	0	0	1	195	1280	45	4		4	ACTC1	15	35083348	Silent	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	4418040	35083348	67448044	52	27041											
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91009552	91009552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	91009552	G	T	91009552	3	4	460	1	0	0	0	0	1	0	0	0	7821	1203	42	4	1985	4	IQGAP1	15	91009552	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	55926204	91009552	11521840	53	27042											
RCCD1	91433	hgsc.bcm.edu	37	15	91500668	91500668	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	91500668	G	A	91500668	2	1	460	1	0	0	0	0	0	0	0	1	13188	962	34	2		2	RCCD1	15	91500668	Silent	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	491116	91500668	11030724	54	27043											
PKD1	5310	ucsc.edu	37	16	2165459	2165459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	2165459	G	C	2165459	3	2	460	1	0	0	0	0	1	0	0	0	11970	1203	42	4	11042	4	PKD1	16	2165459	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		2165459	88189294	55	27044											
NLRC5	84166	hgsc.bcm.edu	37	16	57099179	57099179	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	57099179	G	C	57099179	3	2	460	1	0	0	0	0	1	0	0	0	10477	1087	38	4	4332	4	NLRC5	16	57099179	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	54933720	57099179	33255574	56	27045											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58620607	58620607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	58620607	T	C	58620607	3	2	460	1	0	0	0	0	1	0	0	0	3619	1638	57	3	7045	3	CNOT1	16	58620607	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	1521428	58620607	31734146	57	27046											
BCMO1	53630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81298288	81298288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	81298288	A	G	81298288	3	3	460	1	0	0	0	0	1	0	0	0	1384	217	8	3	533	3	BCMO1	16	81298288	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	22677681	81298288	9056465	58	27047											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60040331	60040331	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	60040331	T	G	60040331	3	3	460	1	0	0	0	0	1	0	0	0	9437	1710	59	5	1718	5	MED13	17	60040331	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		60040331	21154879	59	27048											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73746316	73746316	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	73746316	G	A	73746316	4	1	460	1	0	0	0	0	0	1	0	0	7904	1212	42	2	3547	2	ITGB4	17	73746316	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	13705985	73746316	7448894	60	27049											
NPC1	4864	hgsc.bcm.edu	37	18	21119433	21119433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	21119433	T	C	21119433	3	2	460	1	0	0	0	0	1	0	0	0	10577	1652	57	3	1067	3	NPC1	18	21119433	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		21119433	56957815	61	27050											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	50683788	50683788	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	50683788	A	T	50683788	3	4	460	1	0	0	0	0	1	0	0	0	4284	188	7	5	1354	5	DCC	18	50683788	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	29564355	50683788	27393460	62	27051											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1061844	1061844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	1061844	G	A	1061844	3	1	460	1	0	0	0	0	1	0	0	0	37	1174	41	2	5685	2	ABCA7	19	1061844	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		1061844	58067139	63	27052											
SHD	56961	broad.mit.edu	37	19	4284873	4284873	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	4284873	G	C	4284873	3	2	460	1	0	0	0	0	1	0	0	0	14288	1174	41	4	702	4	SHD	19	4284873	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	3223029	4284873	54844110	64	27053											
SH2D3A	10045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6760836	6760836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	6760836	A	G	6760836	3	3	460	1	0	0	0	0	1	0	0	0	14246	72	3	3	1530	3	SH2D3A	19	6760836	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	2475963	6760836	52368147	65	27054											
MAP2K7	5609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7976338	7976338	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	7976338	A	G	7976338	2	3	460	1	0	0	0	0	0	0	0	1	9249	262	10	3		3	MAP2K7	19	7976338	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	1215502	7976338	51152645	66	27055											
ZNF799	90576	ucsc.edu	37	19	12502924	12502924	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	12502924	A	T	12502924	2	4	460	1	0	0	0	0	0	0	0	1	18178	291	11	5		5	ZNF799	19	12502924	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	4526586	12502924	46626059	67	27056											
SLC27A1	376497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17615314	17615314	+	Missense_Mutation	SNP	C	C	T	rs149575978		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	17615314	C	T	17615314	3	4	460	1	0	0	0	0	1	0	0	0	14538	536	19	1	1880	1	SLC27A1	19	17615314	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	5112390	17615314	41513669	68	27057											
DMWD	1762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46294234	46294234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	46294234	C	A	46294234	3	1	460	1	0	0	0	0	1	0	0	0	4595	623	22	4	1487	4	DMWD	19	46294234	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	28678920	46294234	12834749	69	27058											
ZNF613	79898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52448014	52448014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	52448014	G	T	52448014	3	4	460	1	0	0	0	0	1	0	0	0	18050	1377	48	4	892	4	ZNF613	19	52448014	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	6153780	52448014	6680969	70	27059											
ZNF845	91664	broad.mit.edu	37	19	53855052	53855052	+	Missense_Mutation	SNP	A	A	G	rs62115343		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	G	53855052	A	G	53855052	3	3	460	1	0	0	0	0	1	0	0	0	18203	14	1	3	1134	3	ZNF845	19	53855052	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	1407038	53855052	5273931	71	27060											
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60927089	60927089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	60927089	G	T	60927089	3	4	460	1	0	0	0	0	1	0	0	0	8616	1174	41	4	10657	4	LAMA5	20	60927089	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		60927089	2098431	72	27061											
CBR1	873	broad.mit.edu;bcgsc.ca	37	21	37442617	37442626	+	Frame_Shift_Del	DEL	GAGCATCCGC	GAGCATCCGC	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	GAGCATCCGC	GAGCATCCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	-	37442626	GAGCATCCGC	-	37442617	7	5	460	1	0	1	0	1	0	0	0	0	2710	933	33	0	206	0	CBR1	21	37442617	Frame_Shift_Del	DEL	GAGCATCCGC	TCGA-BQ-7053-01A-11D-1961-08		37442617	10687278	73	27062											
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	39672237	39672239	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	-	39672239	GAG	-	39672237	7	5	460	1	0	1	0	1	0	0	0	0	8056	1059	37	0	1056	0	KCNJ15	21	39672237	In_Frame_Del	DEL	GAG	TCGA-BQ-7053-01A-11D-1961-08	2229620	39672237	8457658	74	27063											
SGSM3	27352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40803806	40803806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	40803806	A	C	40803806	3	2	460	1	0	0	0	0	1	0	0	0	14237	72	3	5	1588	5	SGSM3	22	40803806	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08		40803806	10500760	75	27064											
TFE3	7030	ucsc.edu	37	X	48895570	48895570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	C	48895570	G	C	48895570	3	2	460	1	0	0	0	0	1	0	0	0	15812	1203	42	4	901	4	TFE3	23	48895570	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		48895570	106374990	76	27065											
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69898664	69898664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	T	69898664	C	T	69898664	3	4	460	1	0	0	0	0	1	0	0	0	15786	565	20	2	1609	2	TEX11	23	69898664	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	21003094	69898664	85371896	77	27066											
NXF5	55998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101096014	101096014	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	A	101096014	T	A	101096014	4	1	460	1	0	0	0	0	0	1	0	0	10793	1792	62	5	679	5	NXF5	23	101096014	Nonsense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	31197350	101096014	54174546	78	27067											
ZMYM1	79830	broad.mit.edu	37	1	35579564	35579564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	G	35579564	A	G	35579564	3	3	461	1	0	0	0	0	1	0	0	0	17711	381	14	3	2167	3	ZMYM1	1	35579564	Missense_Mutation	SNP	A	TCGA-BQ-7055-01A-11D-1961-08		35579564	213671057	1	27068											
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	105886051	105886051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	A	105886051	G	A	105886051	3	1	461	1	0	0	0	0	1	0	0	0	15836	1087	38	1	506	1	TGFBRAP1	2	105886051	Missense_Mutation	SNP	G	TCGA-BQ-7055-01A-11D-1961-08		105886051	137313322	2	27069											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179659659	179659659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	T	179659659	C	T	179659659	3	4	461	1	0	0	0	0	1	0	0	0	16747	507	18	2	110177	2	TTN	2	179659659	Missense_Mutation	SNP	C	TCGA-BQ-7055-01A-11D-1961-08	73773608	179659659	63539714	3	27070											
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	49200861	49200862	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	-	49200862	CT	-	49200861	7	5	461	1	0	1	0	1	0	0	0	0	2846	797	28	0	626	0	CCDC71	3	49200861	Frame_Shift_Del	DEL	CT	TCGA-BQ-7055-01A-11D-1961-08		49200861	148821569	4	27071											
MUC13	56667	broad.mit.edu	37	3	124632011	124632011	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	G	124632011	A	G	124632011	2	3	461	1	0	0	0	0	0	0	0	1	9978	175	7	3		3	MUC13	3	124632011	Silent	SNP	A	TCGA-BQ-7055-01A-11D-1961-08	75431150	124632011	73390419	5	27072											
DEFB114	245928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49931770	49931770	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	A	49931770	G	A	49931770	2	1	461	1	0	0	0	0	0	0	0	1	4405	933	33	2		2	DEFB114	6	49931770	Silent	SNP	G	TCGA-BQ-7055-01A-11D-1961-08		49931770	121183297	6	27073											
MPDZ	8777	hgsc.bcm.edu	37	9	13183483	13183483	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	G	13183483	A	G	13183483	2	3	461	1	0	0	0	0	0	0	0	1	9729	291	11	3		3	MPDZ	9	13183483	Silent	SNP	A	TCGA-BQ-7055-01A-11D-1961-08		13183483	128029948	7	27074											
CPSF7	79869	broad.mit.edu	37	11	61183647	61183647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	T	61183647	G	T	61183647	3	4	461	1	0	0	0	0	1	0	0	0	3832	1261	44	4	536	4	CPSF7	11	61183647	Missense_Mutation	SNP	G	TCGA-BQ-7055-01A-11D-1961-08		61183647	73822869	8	27075											
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64522811	64522811	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	A	64522811	G	A	64522811	2	1	461	1	0	0	0	0	0	0	0	1	12875	1372	48	2		2	PYGM	11	64522811	Silent	SNP	G	TCGA-BQ-7055-01A-11D-1961-08	3339164	64522811	70483705	9	27076											
CRY1	1407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	107399011	107399011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	C	107399011	T	C	107399011	3	2	461	1	0	0	0	0	1	0	0	0	3905	1763	61	3	1517	3	CRY1	12	107399011	Missense_Mutation	SNP	T	TCGA-BQ-7055-01A-11D-1961-08		107399011	26452884	10	27077											
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190845	39190846	+	Missense_Mutation	DNP	GG	GG	CA	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	CA	39190846	GG	CA	39190845	3	2	461	1	0	0	0	0	1	0	0	0	8510	1357	47	4	278	4	KRTAP1-3	17	39190845	Missense_Mutation	DNP	GG	TCGA-BQ-7055-01A-11D-1961-08		39190845	42004365	11	27078											
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	G	8527467	T	G	8527467	5	3	461	1	0	0	0	0	0	0	1	0	7278	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-BQ-7055-01A-11D-1961-08		8527467	50601516	12	27079											
ZNF181	339318	hgsc.bcm.edu	37	19	35232372	35232372	+	Silent	SNP	A	A	G	rs2607244		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	G	35232372	A	G	35232372	2	3	461	1	0	0	0	0	0	0	0	1	17761	204	8	3		3	ZNF181	19	35232372	Silent	SNP	A	TCGA-BQ-7055-01A-11D-1961-08	26704905	35232372	23896611	13	27080											
SYT3	84258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51135675	51135675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	A	51135675	G	A	51135675	3	1	461	1	0	0	0	0	1	0	0	0	15487	1116	39	1	1258	1	SYT3	19	51135675	Missense_Mutation	SNP	G	TCGA-BQ-7055-01A-11D-1961-08	15903303	51135675	7993308	14	27081											
ZNF304	57343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57869057	57869057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	A	57869057	G	A	57869057	3	1	461	1	0	0	0	0	1	0	0	0	17845	1000	35	2	1830	2	ZNF304	19	57869057	Missense_Mutation	SNP	G	TCGA-BQ-7055-01A-11D-1961-08	6733382	57869057	1259926	15	27082											
XPNPEP2	7512	bcgsc.ca	37	X	128895980	128895980	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	G	128895980	A	G	128895980	5	3	461	1	0	0	0	0	0	0	1	0	17455	434	15	3	1672	3	XPNPEP2	23	128895980	Splice_Site	SNP	A	TCGA-BQ-7055-01A-11D-1961-08		128895980	26374580	16	27083											
MAGEA6	4105	broad.mit.edu	37	X	151870045	151870045	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	A	151870045	G	A	151870045	2	1	461	1	0	0	0	0	0	0	0	1	9177	1306	46	2		2	MAGEA6	23	151870045	Silent	SNP	G	TCGA-BQ-7055-01A-11D-1961-08	22974065	151870045	3400515	17	27084											
TRIT1	54802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40307511	40307511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	40307511	T	C	40307511	3	2	462	1	0	0	0	0	1	0	0	0	16572	1464	51	3	98	3	TRIT1	1	40307511	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08		40307511	208943110	1	27085											
MIER1	57708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	67423741	67423741	+	Splice_Site	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	67423741	G	C	67423741	5	2	462	1	0	0	0	0	0	0	1	0	9587	1014	35	4	434	4	MIER1	1	67423741	Splice_Site	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	27116230	67423741	181826880	2	27086											
USP33	23032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78163088	78163088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	78163088	C	A	78163088	3	1	462	1	0	0	0	0	1	0	0	0	17076	565	20	4	89	4	USP33	1	78163088	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	10739347	78163088	171087533	3	27087											
ZNHIT6	54680	broad.mit.edu	37	1	86123544	86123544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	86123544	T	G	86123544	3	3	462	1	0	0	0	0	1	0	0	0	18221	1841	64	5	62	5	ZNHIT6	1	86123544	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	7960456	86123544	163127077	4	27088											
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94668261	94668261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	94668261	C	A	94668261	3	1	462	1	0	0	0	0	1	0	0	0	878	739	26	4	2855	4	ARHGAP29	1	94668261	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	8544717	94668261	154582360	5	27089											
KCNC4	3749	ucsc.edu	37	1	110774883	110774883	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	110774883	T	C	110774883	2	2	462	1	0	0	0	0	0	0	0	1	8024	1567	55	3		3	KCNC4	1	110774883	Silent	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	16106622	110774883	138475738	6	27090											
BCL9	607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	147086309	147086309	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	147086309	A	C	147086309	2	2	462	1	0	0	0	0	0	0	0	1	1381	179	7	5		5	BCL9	1	147086309	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	36311426	147086309	102164312	7	27091											
BCL9	607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	147086367	147086367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	147086367	A	G	147086367	3	3	462	1	0	0	0	0	1	0	0	0	1381	72	3	3	522	3	BCL9	1	147086367	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	58	147086367	102164254	8	27092											
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152733695	152733695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	152733695	G	A	152733695	3	1	462	1	0	0	0	0	1	0	0	0	8443	1203	42	2	1633	2	KPRP	1	152733695	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	5647328	152733695	96516926	9	27093											
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236195870	236195870	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	236195870	A	G	236195870	2	3	462	1	0	0	0	0	0	0	0	1	10421	175	7	3		3	NID1	1	236195870	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	83462175	236195870	13054751	10	27094											
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247597496	247597496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	247597496	G	T	247597496	3	4	462	1	0	0	0	0	1	0	0	0	10485	1290	45	4	2437	4	NLRP3	1	247597496	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	11401626	247597496	1653125	11	27095											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32726845	32726845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	32726845	G	A	32726845	3	1	462	1	0	0	0	0	1	0	0	0	1438	1348	47	2	9283	2	BIRC6	2	32726845	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08		32726845	210472528	12	27096											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37280725	37280725	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	37280725	C	A	37280725	4	1	462	1	0	0	0	0	0	1	0	0	7039	835	29	4	3870	4	HEATR5B	2	37280725	Nonsense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	4553880	37280725	205918648	13	27097											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109379713	109379713	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	109379713	T	C	109379713	2	2	462	1	0	0	0	0	0	0	0	1	13041	1403	49	3		3	RANBP2	2	109379713	Silent	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	72098988	109379713	133819660	14	27098											
UBXN4	23190	hgsc.bcm.edu	37	2	136505919	136505919	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	136505919	T	C	136505919	2	2	462	1	0	0	0	0	0	0	0	1	16928	1509	53	3		3	UBXN4	2	136505919	Silent	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	27126206	136505919	106693454	15	27099											
ZNF804A	91752	ucsc.edu;bcgsc.ca	37	2	185802049	185802049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	185802049	G	T	185802049	3	4	462	1	0	0	0	0	1	0	0	0	18182	1020	36	4	1940	4	ZNF804A	2	185802049	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	49296130	185802049	57397324	16	27100											
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190428768	190428768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	190428768	G	A	190428768	3	1	462	1	0	0	0	0	1	0	0	0	14641	971	34	2	779	2	SLC40A1	2	190428768	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	4626719	190428768	52770605	17	27101	334	2									
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190428774	190428774	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	190428774	C	G	190428774	3	3	462	1	0	0	0	0	1	0	0	0	14641	507	18	4	785	4	SLC40A1	2	190428774	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	6	190428774	52770599	18	27102	334	2									
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47164376	47164377	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	47164377	-	T	47164376	7	5	462	1	0	1	1	0	0	0	0	0	14144	1386	48	0	6020	0	SETD2	3	47164376	Frame_Shift_Ins	INS	-	TCGA-BQ-7058-01A-11D-1961-08		47164376	150858054	19	27103											
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51456171	51456171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	51456171	G	T	51456171	3	4	462	1	0	0	0	0	1	0	0	0	17197	1020	36	4	1167	4	VPRBP	3	51456171	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	4291795	51456171	146566259	20	27104											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52584609	52584609	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	52584609	A	T	52584609	4	4	462	1	0	0	0	0	0	1	0	0	11498	340	12	5	352	5	PBRM1	3	52584609	Nonsense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	1128438	52584609	145437821	21	27105											
COL8A1	1295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	99513269	99513269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	99513269	C	T	99513269	3	4	462	1	0	0	0	0	1	0	0	0	3707	681	24	2	530	2	COL8A1	3	99513269	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	46928660	99513269	98509161	22	27106											
PDIA5	10954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122821610	122821610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	122821610	T	A	122821610	3	1	462	1	0	0	0	0	1	0	0	0	11678	1780	62	5	372	5	PDIA5	3	122821610	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	23308341	122821610	75200820	23	27107											
CSN3	1448	hgsc.bcm.edu;broad.mit.edu	37	4	71114720	71114720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	71114720	T	A	71114720	3	1	462	1	0	0	0	0	1	0	0	0	3951	1461	51	5	103	5	CSN3	4	71114720	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08		71114720	120039556	24	27108											
AFM	173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	74364944	74364944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	74364944	T	C	74364944	3	2	462	1	0	0	0	0	1	0	0	0	361	1841	64	3	1445	3	AFM	4	74364944	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	3250224	74364944	116789332	25	27109											
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88029422	88029422	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	88029422	A	T	88029422	2	4	462	1	0	0	0	0	0	0	0	1	356	117	5	5		5	AFF1	4	88029422	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	13664478	88029422	103124854	26	27110											
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	109084775	109084775	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	109084775	A	C	109084775	3	2	462	1	0	0	0	0	1	0	0	0	8721	446	16	5	956	5	LEF1	4	109084775	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	21055353	109084775	82069501	27	27111											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	151827549	151827549	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	-	151827549	A	-	151827549	7	5	462	1	0	1	0	1	0	0	0	0	8938	131	5	0	7277	0	LRBA	4	151827549	Frame_Shift_Del	DEL	A	TCGA-BQ-7058-01A-11D-1961-08	42742774	151827549	39326727	28	27112											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	155226303	155226303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	155226303	C	A	155226303	3	1	462	1	0	0	0	0	1	0	0	0	4290	507	18	4	4814	4	DCHS2	4	155226303	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	3398754	155226303	35927973	29	27113											
TRIP13	9319	broad.mit.edu	37	5	916037	916037	+	Silent	SNP	C	C	T	rs147247158		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	916037	C	T	916037	2	4	462	1	0	0	0	0	0	0	0	1	16569	767	27	1		1	TRIP13	5	916037	Silent	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		916037	179999223	30	27114											
FAM105A	54491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14609077	14609077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	14609077	T	C	14609077	3	2	462	1	0	0	0	0	1	0	0	0	5391	1783	62	3	874	3	FAM105A	5	14609077	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	13693040	14609077	166306183	31	27115											
NSD1	64324	bcgsc.ca	37	5	176637986	176637986	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	176637986	C	T	176637986	2	4	462	1	0	0	0	0	0	0	0	1	10676	639	23	1		1	NSD1	5	176637986	Silent	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	162028909	176637986	4277274	32	27116											
TXNDC5	81567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7889004	7889004	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	7889004	A	C	7889004	2	2	462	1	0	0	0	0	0	0	0	1	16811	175	7	5		5	TXNDC5	6	7889004	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08		7889004	163226063	33	27117											
HCRTR2	3062	broad.mit.edu	37	6	55039406	55039406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	55039406	G	T	55039406	3	4	462	1	0	0	0	0	1	0	0	0	7009	991	35	4	23	4	HCRTR2	6	55039406	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	47150402	55039406	116075661	34	27118											
LIN28B	389421	broad.mit.edu	37	6	105405976	105405976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	105405976	G	A	105405976	3	1	462	1	0	0	0	0	1	0	0	0	8813	1116	39	1	19	1	LIN28B	6	105405976	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	50366570	105405976	65709091	35	27119											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2963967	2963967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	2963967	A	T	2963967	3	4	462	1	0	0	0	0	1	0	0	0	2647	304	11	5	1668	5	CARD11	7	2963967	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08		2963967	156174696	36	27120											
HOXA5	3202	broad.mit.edu	37	7	27182960	27182966	+	Frame_Shift_Del	DEL	CGGCTGG	CGGCTGG	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	CGGCTGG	CGGCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	-	27182966	CGGCTGG	-	27182960	7	5	462	1	0	1	0	1	0	0	0	0	7302	639	23	0	553	0	HOXA5	7	27182960	Frame_Shift_Del	DEL	CGGCTGG	TCGA-BQ-7058-01A-11D-1961-08	24218993	27182960	131955703	37	27121											
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	108112970	108112970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	108112970	C	T	108112970	3	4	462	1	0	0	0	0	1	0	0	0	12178	835	29	2	128	2	PNPLA8	7	108112970	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	80930010	108112970	51025693	38	27122											
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	35541184	35541184	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	35541184	C	T	35541184	2	4	462	1	0	0	0	0	0	0	0	1	17007	668	24	2		2	UNC5D	8	35541184	Silent	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		35541184	110822838	39	27123											
CDH17	1015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95158391	95158391	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	-	95158391	C	-	95158391	7	5	462	1	0	1	0	1	0	0	0	0	3104	494	18	0	582	0	CDH17	8	95158391	Frame_Shift_Del	DEL	C	TCGA-BQ-7058-01A-11D-1961-08	59617207	95158391	51205631	40	27124											
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	120429171	120429171	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	120429171	G	C	120429171	3	2	462	1	0	0	0	0	1	0	0	0	10560	1087	38	4	278	4	NOV	8	120429171	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	25270780	120429171	25934851	41	27125											
FAM135B	51059	broad.mit.edu	37	8	139151264	139151264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	139151264	C	T	139151264	3	4	462	1	0	0	0	0	1	0	0	0	5453	768	27	1	366	1	FAM135B	8	139151264	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	18722093	139151264	7212758	42	27126											
RASEF	158158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	85597649	85597649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	85597649	A	C	85597649	3	2	462	1	0	0	0	0	1	0	0	0	13081	330	12	5	60	5	RASEF	9	85597649	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08		85597649	55615782	43	27127											
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118969850	118969850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	118969850	C	T	118969850	3	4	462	1	0	0	0	0	1	0	0	0	11439	739	26	2	1604	2	PAPPA	9	118969850	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	33372201	118969850	22243581	44	27128											
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	119495750	119495750	+	Missense_Mutation	SNP	T	T	A	rs150944935	byfrequency;alternate_allele	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	119495750	T	A	119495750	3	1	462	1	0	0	0	0	1	0	0	0	1065	1435	50	5	1842	5	ASTN2	9	119495750	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	525900	119495750	21717681	45	27129											
DDX50	79009	broad.mit.edu;bcgsc.ca	37	10	70670998	70670998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	70670998	C	T	70670998	3	4	462	1	0	0	0	0	1	0	0	0	4370	594	21	2	649	2	DDX50	10	70670998	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		70670998	64863749	46	27130											
ECD	11319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	74906091	74906091	+	Missense_Mutation	SNP	C	C	G	rs147908494	byfrequency;alternate_allele	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	74906091	C	G	74906091	3	3	462	1	0	0	0	0	1	0	0	0	4890	652	23	4	991	4	ECD	10	74906091	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	4235093	74906091	60628656	47	27131											
ADK	132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	76468112	76468112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	76468112	T	C	76468112	3	2	462	1	0	0	0	0	1	0	0	0	320	1580	55	3	1058	3	ADK	10	76468112	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	1562021	76468112	59066635	48	27132											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115381720	115381720	+	Missense_Mutation	SNP	C	C	T	rs200031510		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	115381720	C	T	115381720	3	4	462	1	0	0	0	0	1	0	0	0	10645	536	19	1	2591	1	NRAP	10	115381720	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	38913608	115381720	20153027	49	27133											
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	281108	281108	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	281108	G	C	281108	2	2	462	1	0	0	0	0	0	0	0	1	10488	1074	38	4		4	NLRP6	11	281108	Silent	SNP	G	TCGA-BQ-7058-01A-11D-1961-08		281108	134725408	50	27134											
KCNQ1	3784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	2466713	2466713	+	Missense_Mutation	SNP	G	G	A	rs199472683		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	2466713	G	A	2466713	3	1	462	1	0	0	0	0	1	0	0	0	8089	1159	40	1	387	1	KCNQ1	11	2466713	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	2185605	2466713	132539803	51	27135											
OR1S1	219959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57982376	57982376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	57982376	G	A	57982376	3	1	462	1	0	0	0	0	1	0	0	0	10979	1348	47	2	162	2	OR1S1	11	57982376	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	55515663	57982376	77024140	52	27136											
TRMT112	51504	hgsc.bcm.edu;broad.mit.edu	37	11	64084953	64084953	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	-	64084953	C	-	64084953	7	5	462	1	0	1	0	1	0	0	0	0	16575	507	18	0	347	0	TRMT112	11	64084953	Frame_Shift_Del	DEL	C	TCGA-BQ-7058-01A-11D-1961-08	6102577	64084953	70921563	53	27137											
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65113439	65113439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	65113439	T	C	65113439	3	2	462	1	0	0	0	0	1	0	0	0	4719	1522	53	3	844	3	DPF2	11	65113439	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	1028486	65113439	69893077	54	27138											
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66488565	66488565	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	66488565	C	G	66488565	3	3	462	1	0	0	0	0	1	0	0	0	15132	680	24	4	7169	4	SPTBN2	11	66488565	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	1375126	66488565	68517951	55	27139											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877707	82877707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	82877707	A	C	82877707	3	2	462	1	0	0	0	0	1	0	0	0	11580	72	3	5	1786	5	PCF11	11	82877707	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	16389142	82877707	52128809	56	27140											
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	662534	662534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	662534	C	A	662534	3	1	462	1	0	0	0	0	1	0	0	0	1268	623	22	4	1499	4	B4GALNT3	12	662534	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		662534	133189361	57	27141											
TMTC3	160418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	88548132	88548132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	88548132	A	G	88548132	3	3	462	1	0	0	0	0	1	0	0	0	16274	449	16	3	486	3	TMTC3	12	88548132	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	87885598	88548132	45303763	58	27142											
FOXO1	2308	broad.mit.edu	37	13	41134463	41134467	+	Frame_Shift_Del	DEL	CAGTT	CAGTT	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	CAGTT	CAGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	-	41134467	CAGTT	-	41134463	7	5	462	1	0	1	0	1	0	0	0	0	6030	478	17	0	806	0	FOXO1	13	41134463	Frame_Shift_Del	DEL	CAGTT	TCGA-BQ-7058-01A-11D-1961-08		41134463	74035415	59	27143	335	2									
FOXO1	2308	bcgsc.ca	37	13	41134471	41134471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	41134471	G	A	41134471	3	1	462	1	0	0	0	0	1	0	0	0	6030	1294	45	2	814	2	FOXO1	13	41134471	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	8	41134471	74035407	60	27144	335	2									
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31598378	31598378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	31598378	C	A	31598378	3	1	462	1	0	0	0	0	1	0	0	0	7046	507	18	4	3709	4	HECTD1	14	31598378	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		31598378	75751162	61	27145											
NID2	22795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	52474565	52474565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	-	52474565	A	-	52474565	7	5	462	1	0	1	0	1	0	0	0	0	10422	127	5	0	300	0	NID2	14	52474565	Frame_Shift_Del	DEL	A	TCGA-BQ-7058-01A-11D-1961-08	20876187	52474565	54874975	62	27146											
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	71413816	71413816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	71413816	G	T	71413816	3	4	462	1	0	0	0	0	1	0	0	0	11598	1000	35	4	344	4	PCNX	14	71413816	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	18939251	71413816	35935724	63	27147											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64005696	64005696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	64005696	G	C	64005696	3	2	462	1	0	0	0	0	1	0	0	0	7064	971	34	4	10490	4	HERC1	15	64005696	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08		64005696	38525696	64	27148											
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65496681	65496681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	65496681	A	T	65496681	3	4	462	1	0	0	0	0	1	0	0	0	3431	43	2	5	2726	5	CILP	15	65496681	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	1490985	65496681	37034711	65	27149											
SRL	6345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4245669	4245669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	4245669	A	C	4245669	3	2	462	1	0	0	0	0	1	0	0	0	15162	127	5	5	934	5	SRL	16	4245669	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08		4245669	86109084	66	27150											
RBL2	5934	broad.mit.edu	37	16	53468508	53468508	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	-	53468508	C	-	53468508	7	5	462	1	0	1	0	1	0	0	0	0	13123	855	30	0	42	0	RBL2	16	53468508	Frame_Shift_Del	DEL	C	TCGA-BQ-7058-01A-11D-1961-08	49222839	53468508	36886245	67	27151											
GSG2	83903	hgsc.bcm.edu	37	17	3629036	3629036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	3629036	C	G	3629036	3	3	462	1	0	0	0	0	1	0	0	0	6829	796	28	4	1809	4	GSG2	17	3629036	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		3629036	77566174	68	27152											
NLK	51701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26490600	26490600	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	26490600	A	G	26490600	2	3	462	1	0	0	0	0	0	0	0	1	10473	388	14	3		3	NLK	17	26490600	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	22861564	26490600	54704610	69	27153											
COX11	1353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	53045784	53045784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	53045784	T	G	53045784	3	3	462	1	0	0	0	0	1	0	0	0	3765	1609	56	5	688	5	COX11	17	53045784	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	26555184	53045784	28149426	70	27154											
DDX5	1655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62500170	62500170	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	62500170	T	C	62500170	2	2	462	1	0	0	0	0	0	0	0	1	4369	1422	50	3		3	DDX5	17	62500170	Silent	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	9454386	62500170	18695040	71	27155											
SLC9A3R1	9368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72745286	72745286	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	72745286	A	T	72745286	4	4	462	1	0	0	0	0	0	1	0	0	14727	247	9	5	303	5	SLC9A3R1	17	72745286	Nonsense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	10245116	72745286	8449924	72	27156											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80038618	80038618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	80038618	C	T	80038618	3	4	462	1	0	0	0	0	1	0	0	0	5690	797	28	2	779	2	FASN	17	80038618	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	7293332	80038618	1156592	73	27157											
METTL4	64863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2554953	2554953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	2554953	G	C	2554953	3	2	462	1	0	0	0	0	1	0	0	0	9509	1386	48	4	898	4	METTL4	18	2554953	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08		2554953	75522295	74	27158											
OSBPL1A	114876	broad.mit.edu;bcgsc.ca	37	18	21819191	21819191	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	21819191	C	A	21819191	2	1	462	1	0	0	0	0	0	0	0	1	11284	755	27	4		4	OSBPL1A	18	21819191	Silent	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	19264238	21819191	56258057	75	27159											
PALM	5064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	746543	746543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	746543	T	G	746543	3	3	462	1	0	0	0	0	1	0	0	0	11415	1667	58	5	927	5	PALM	19	746543	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08		746543	58382440	76	27160											
CELF5	60680	broad.mit.edu	37	19	3293390	3293390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	3293390	G	T	3293390	3	4	462	1	0	0	0	0	1	0	0	0	3221	1290	45	4	1450	4	CELF5	19	3293390	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	2546847	3293390	55835593	77	27161											
PIAS4	51588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4013072	4013072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	C	4013072	A	C	4013072	3	2	462	1	0	0	0	0	1	0	0	0	11885	304	11	5	185	5	PIAS4	19	4013072	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	719682	4013072	55115911	78	27162											
FBXW9	84261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12807385	12807385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	12807385	G	T	12807385	3	4	462	1	0	0	0	0	1	0	0	0	5778	1232	43	4	1405	4	FBXW9	19	12807385	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	8794313	12807385	46321598	79	27163											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38976604	38976604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	38976604	C	T	38976604	3	4	462	1	0	0	0	0	1	0	0	0	13781	893	31	1	5443	1	RYR1	19	38976604	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	26169219	38976604	20152379	80	27164											
PSG3	5671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43237192	43237192	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	T	43237192	G	T	43237192	2	4	462	1	0	0	0	0	0	0	0	1	12666	932	33	4		4	PSG3	19	43237192	Silent	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	4260588	43237192	15891791	81	27165											
PPP1R15A	23645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49377875	49377875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	A	49377875	G	A	49377875	3	1	462	1	0	0	0	0	1	0	0	0	12373	1174	41	2	1387	2	PPP1R15A	19	49377875	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	6140683	49377875	9751108	82	27166											
PCBP3	54039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47333926	47333926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	G	47333926	T	G	47333926	3	3	462	1	0	0	0	0	1	0	0	0	11509	1841	64	5	692	5	PCBP3	21	47333926	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08		47333926	795969	83	27167											
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	101912417	101912418	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	-	101912418	TC	-	101912417	7	5	462	1	0	1	0	1	0	0	0	0	6729	1771	62	0	3578	0	GPRASP1	23	101912417	Frame_Shift_Del	DEL	TC	TCGA-BQ-7058-01A-11D-1961-08		101912417	53358143	84	27168											
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2340282	2340282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	2340282	C	G	2340282	3	3	463	1	0	0	0	0	1	0	0	0	11743	623	22	4	847	4	PEX10	1	2340282	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		2340282	246910339	1	27169											
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7887456	7887456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	7887456	G	A	7887456	3	1	463	1	0	0	0	0	1	0	0	0	11738	1087	38	1	2509	1	PER3	1	7887456	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	5547174	7887456	241363165	2	27170											
CELA2A	63036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15793929	15793929	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	15793929	C	T	15793929	4	4	463	1	0	0	0	0	0	1	0	0	3213	711	25	2	714	2	CELA2A	1	15793929	Nonsense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	7906473	15793929	233456692	3	27171											
CLCNKB	1188	broad.mit.edu	37	1	16378296	16378296	+	Silent	SNP	A	A	C	rs199755248		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	16378296	A	C	16378296	2	2	463	1	0	0	0	0	0	0	0	1	3472	175	7	5		5	CLCNKB	1	16378296	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	584367	16378296	232872325	4	27172											
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	36767245	36767245	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	-	36767245	G	-	36767245	7	5	463	1	0	1	0	1	0	0	0	0	15886	1116	39	0	2628	0	THRAP3	1	36767245	Frame_Shift_Del	DEL	G	TCGA-BQ-7059-01A-11D-1961-08	20388949	36767245	212483376	5	27173											
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110034064	110034064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	110034064	C	A	110034064	3	1	463	1	0	0	0	0	1	0	0	0	1217	680	24	4	1917	4	ATXN7L2	1	110034064	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	73266819	110034064	139216557	6	27174											
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156811976	156811976	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	156811976	T	G	156811976	3	3	463	1	0	0	0	0	1	0	0	0	7781	1821	63	5	583	5	INSRR	1	156811976	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	46777912	156811976	92438645	7	27175											
C1orf21	81563	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	184476745	184476745	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	184476745	G	T	184476745	4	4	463	1	0	0	0	0	0	1	0	0	2030	1175	41	4	124	4	C1orf21	1	184476745	Nonsense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	27664769	184476745	64773876	8	27176											
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204198070	204198070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	204198070	T	C	204198070	3	2	463	1	0	0	0	0	1	0	0	0	12067	1763	61	3	416	3	PLEKHA6	1	204198070	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	19721325	204198070	45052551	9	27177											
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216019211	216019211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	216019211	G	T	216019211	3	4	463	1	0	0	0	0	1	0	0	0	17048	1348	47	4	6710	4	USH2A	1	216019211	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	11821141	216019211	33231410	10	27178											
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223984099	223984099	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	223984099	A	G	223984099	2	3	463	1	0	0	0	0	0	0	0	1	16396	330	12	3		3	TP53BP2	1	223984099	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	7964888	223984099	25266522	11	27179											
SMEK2	57223	broad.mit.edu;ucsc.edu	37	2	55844410	55844410	+	Silent	SNP	C	C	T	rs142775723		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	55844410	C	T	55844410	2	4	463	1	0	0	0	0	0	0	0	1	14807	755	27	1		1	SMEK2	2	55844410	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		55844410	187354963	12	27180											
DUSP11	8446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74007101	74007101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	74007101	T	C	74007101	3	2	463	1	0	0	0	0	1	0	0	0	4813	1464	51	3	1027	3	DUSP11	2	74007101	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	18162691	74007101	169192272	13	27181											
DPP10	57628	broad.mit.edu	37	2	116572492	116572492	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	116572492	T	C	116572492	2	2	463	1	0	0	0	0	0	0	0	1	4729	1654	58	3		3	DPP10	2	116572492	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	42565391	116572492	126626881	14	27182											
ARHGEF4	50649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131801882	131801882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	131801882	G	A	131801882	3	1	463	1	0	0	0	0	1	0	0	0	908	1087	38	1	1648	1	ARHGEF4	2	131801882	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	15229390	131801882	111397491	15	27183											
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	1371578	1371578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	1371578	C	G	1371578	3	3	463	1	0	0	0	0	1	0	0	0	3647	903	32	4	1361	4	CNTN6	3	1371578	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		1371578	196650852	16	27184											
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9800959	9800960	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	9800960	-	T	9800959	7	5	463	1	0	1	1	0	0	0	0	0	10852	913	32	0	1379	0	OGG1	3	9800959	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	8429381	9800959	188221471	17	27185											
PLXNB1	5364	hgsc.bcm.edu	37	3	48456619	48456619	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	48456619	G	C	48456619	3	2	463	1	0	0	0	0	1	0	0	0	12130	1319	46	4	2551	4	PLXNB1	3	48456619	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	38655660	48456619	149565811	18	27186											
CHDH	55349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	53857341	53857341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	53857341	A	G	53857341	3	3	463	1	0	0	0	0	1	0	0	0	3335	333	12	3	1117	3	CHDH	3	53857341	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	5400722	53857341	144165089	19	27187											
VGLL3	389136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	87017993	87017993	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	87017993	C	T	87017993	2	4	463	1	0	0	0	0	0	0	0	1	17172	726	26	2		2	VGLL3	3	87017993	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	33160652	87017993	111004437	20	27188											
PARP14	54625	broad.mit.edu;ucsc.edu	37	3	122414352	122414352	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	122414352	G	A	122414352	2	1	463	1	0	0	0	0	0	0	0	1	11465	1277	45	2		2	PARP14	3	122414352	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	35396359	122414352	75608078	21	27189											
EPHB1	2047	broad.mit.edu;bcgsc.ca	37	3	134873005	134873005	+	Missense_Mutation	SNP	G	G	A	rs183234182		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	134873005	G	A	134873005	3	1	463	1	0	0	0	0	1	0	0	0	5176	1145	40	1	1331	1	EPHB1	3	134873005	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	12458653	134873005	63149425	22	27190											
TLR1	7096	broad.mit.edu;bcgsc.ca	37	4	38798114	38798114	+	Missense_Mutation	SNP	A	A	T	rs151285692	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	38798114	A	T	38798114	3	4	463	1	0	0	0	0	1	0	0	0	15961	188	7	5	25	5	TLR1	4	38798114	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08		38798114	152356162	23	27191											
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	42072612	42072612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	42072612	T	A	42072612	3	1	463	1	0	0	0	0	1	0	0	0	14575	1551	54	5	1380	5	SLC30A9	4	42072612	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	3274498	42072612	149081664	24	27192											
KCTD8	386617	hgsc.bcm.edu	37	4	44449962	44449962	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	44449962	G	C	44449962	3	2	463	1	0	0	0	0	1	0	0	0	8122	1136	40	4	850	4	KCTD8	4	44449962	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	2377350	44449962	146704314	25	27193											
TXK	7294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48076056	48076056	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	48076056	T	A	48076056	3	1	463	1	0	0	0	0	1	0	0	0	16798	1435	50	5	342	5	TXK	4	48076056	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	3626094	48076056	143078220	26	27194											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	85781624	85781624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	85781624	G	A	85781624	3	1	463	1	0	0	0	0	1	0	0	0	17282	1319	46	2	10762	2	WDFY3	4	85781624	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	37705568	85781624	105372652	27	27195											
CENPE	1062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104117130	104117130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	104117130	G	A	104117130	3	1	463	1	0	0	0	0	1	0	0	0	3232	1290	45	2	7985	2	CENPE	4	104117130	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	18335506	104117130	87037146	28	27196											
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	149357285	149357285	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	-	149357285	T	-	149357285	7	5	463	1	0	1	0	1	0	0	0	0	10638	1493	52	0	2258	0	NR3C2	4	149357285	Frame_Shift_Del	DEL	T	TCGA-BQ-7059-01A-11D-1961-08	45240155	149357285	41796991	29	27197											
ADAMTS19	171019	broad.mit.edu	37	5	128983499	128983499	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	128983499	T	C	128983499	2	2	463	1	0	0	0	0	0	0	0	1	264	1567	55	3		3	ADAMTS19	5	128983499	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08		128983499	51931761	30	27198											
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131976367	131976367	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	131976367	T	C	131976367	2	2	463	1	0	0	0	0	0	0	0	1	12997	1490	52	3		3	RAD50	5	131976367	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	2992868	131976367	48938893	31	27199											
PCDHGA11	56105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140802438	140802438	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	140802438	G	C	140802438	2	2	463	1	0	0	0	0	0	0	0	1	11559	1074	38	4		4	PCDHGA11	5	140802438	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	8826071	140802438	40112822	32	27200											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	179193559	179193560	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	179193560	-	C	179193559	7	5	463	1	0	1	1	0	0	0	0	0	9212	40	2	0	1554	0	MAML1	5	179193559	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	38391121	179193559	1721701	33	27201											
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	179318454	179318455	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	179318455	-	A	179318454	7	5	463	1	0	1	1	0	0	0	0	0	15640	478	17	0	2851	0	TBC1D9B	5	179318454	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	124895	179318454	1596806	34	27202											
TRIM38	10475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25967011	25967011	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	25967011	G	C	25967011	2	2	463	1	0	0	0	0	0	0	0	1	16524	1103	39	4		4	TRIM38	6	25967011	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08		25967011	145148056	35	27203											
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33644599	33644599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	33644599	G	A	33644599	3	1	463	1	0	0	0	0	1	0	0	0	7929	1175	41	2	3439	2	ITPR3	6	33644599	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	7677588	33644599	137470468	36	27204											
CPNE5	57699	broad.mit.edu;bcgsc.ca	37	6	36712081	36712081	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	36712081	T	A	36712081	3	1	463	1	0	0	0	0	1	0	0	0	3817	1464	51	5	340	5	CPNE5	6	36712081	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	3067482	36712081	134402986	37	27205											
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83839062	83839062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	83839062	C	A	83839062	3	1	463	1	0	0	0	0	1	0	0	0	4709	479	17	4	2230	4	DOPEY1	6	83839062	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	47126981	83839062	87276005	38	27206											
FAM120B	84498	hgsc.bcm.edu;bcgsc.ca	37	6	170700175	170700175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	170700175	C	G	170700175	3	3	463	1	0	0	0	0	1	0	0	0	5421	816	29	4	2591	4	FAM120B	6	170700175	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	86861113	170700175	414892	39	27207											
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	23163475	23163476	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	23163476	-	T	23163475	7	5	463	1	0	1	1	0	0	0	0	0	8401	217	8	0	206	0	KLHL7	7	23163475	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08		23163475	135975188	40	27208											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44685022	44685022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	44685022	G	T	44685022	3	4	463	1	0	0	0	0	1	0	0	0	10846	1377	48	4	325	4	OGDH	7	44685022	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	21521547	44685022	114453641	41	27209											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116423407	116423407	+	Missense_Mutation	SNP	G	G	C	rs28932777	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	116423407	G	C	116423407	3	2	463	1	0	0	0	0	1	0	0	0	9492	942	33	4	3806	4	MET	7	116423407	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	71738385	116423407	42715256	42	27210											
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	6335132	6335133	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	6335133	-	A	6335132	7	5	463	1	0	1	1	0	0	0	0	0	9405	813	29	0	1999	0	MCPH1	8	6335132	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08		6335132	140028890	43	27211											
HR	55806	broad.mit.edu	37	8	21984840	21984840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	21984840	G	A	21984840	3	1	463	1	0	0	0	0	1	0	0	0	7354	1232	43	2	2522	2	HR	8	21984840	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	15649708	21984840	124379182	44	27212											
NEFL	4747	ucsc.edu	37	8	24813289	24813289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	24813289	C	T	24813289	3	4	463	1	0	0	0	0	1	0	0	0	10322	594	21	2	907	2	NEFL	8	24813289	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	2828449	24813289	121550733	45	27213											
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	39044454	39044454	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	39044454	A	G	39044454	2	3	463	1	0	0	0	0	0	0	0	1	249	204	8	3		3	ADAM32	8	39044454	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	14231165	39044454	107319568	46	27214											
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	90936955	90936955	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	90936955	G	C	90936955	3	2	463	1	0	0	0	0	1	0	0	0	11297	1000	35	4	867	4	OSGIN2	8	90936955	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	51892501	90936955	55427067	47	27215											
GSN	2934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	124089637	124089638	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	124089638	-	C	124089637	7	5	463	1	0	1	1	0	0	0	0	0	6832	43	2	0	1870	0	GSN	9	124089637	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08		124089637	17123794	48	27216											
SLC2A8	29988	broad.mit.edu;bcgsc.ca	37	9	130160364	130160364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	130160364	T	A	130160364	3	1	463	1	0	0	0	0	1	0	0	0	14564	1580	55	5	410	5	SLC2A8	9	130160364	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	6070727	130160364	11053067	49	27217											
DNAJC1	64215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	22171214	22171214	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	-	22171214	T	-	22171214	7	5	463	1	0	1	0	1	0	0	0	0	4630	1722	60	0	709	0	DNAJC1	10	22171214	Frame_Shift_Del	DEL	T	TCGA-BQ-7059-01A-11D-1961-08		22171214	113363533	50	27218											
PTCHD3	374308	broad.mit.edu;bcgsc.ca	37	10	27687672	27687673	+	In_Frame_Ins	INS	-	-	GTATAT	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	GTATAT	27687673	-	GTATAT	27687672	7	5	463	1	0	1	1	0	0	0	0	0	12744	594	21	0	452	0	PTCHD3	10	27687672	In_Frame_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	5516458	27687672	107847075	51	27219											
PHRF1	57661	ucsc.edu	37	11	608874	608874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	608874	G	A	608874	3	1	463	1	0	0	0	0	1	0	0	0	11868	1175	41	2	3465	2	PHRF1	11	608874	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08		608874	134397642	52	27220											
ATG2A	23130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64679328	64679328	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	64679328	T	A	64679328	3	1	463	1	0	0	0	0	1	0	0	0	1093	1580	55	5	4734	5	ATG2A	11	64679328	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	64070454	64679328	70327188	53	27221											
BBS1	582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66282135	66282135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	66282135	A	G	66282135	3	3	463	1	0	0	0	0	1	0	0	0	1335	246	9	3	432	3	BBS1	11	66282135	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	1602807	66282135	68724381	54	27222											
MAML2	84441	hgsc.bcm.edu	37	11	95825431	95825431	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	95825431	T	C	95825431	2	2	463	1	0	0	0	0	0	0	0	1	9213	1722	60	3		3	MAML2	11	95825431	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	29543296	95825431	39181085	55	27223											
TMEM133	83935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	100863392	100863392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	100863392	T	A	100863392	3	1	463	1	0	0	0	0	1	0	0	0	16061	1609	56	5	355	5	TMEM133	11	100863392	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	5037961	100863392	34143124	56	27224											
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118516164	118516164	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	-	118516164	A	-	118516164	7	5	463	1	0	1	0	1	0	0	0	0	11858	159	6	0	3270	0	PHLDB1	11	118516164	Frame_Shift_Del	DEL	A	TCGA-BQ-7059-01A-11D-1961-08	17652772	118516164	16490352	57	27225	336	3									
PHLDB1	23187	hgsc.bcm.edu;bcgsc.ca	37	11	118516166	118516166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	118516166	G	C	118516166	3	2	463	1	0	0	0	0	1	0	0	0	11858	1116	39	4	3272	4	PHLDB1	11	118516166	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	2	118516166	16490350	58	27226	336	3									
PHLDB1	23187	hgsc.bcm.edu	37	11	118516168	118516168	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	-	118516168	G	-	118516168	7	5	463	1	0	1	0	1	0	0	0	0	11858	1219	43	0	3274	0	PHLDB1	11	118516168	Frame_Shift_Del	DEL	G	TCGA-BQ-7059-01A-11D-1961-08	2	118516168	16490348	59	27227	336	3									
GRIK4	2900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120745883	120745883	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	120745883	C	T	120745883	2	4	463	1	0	0	0	0	0	0	0	1	6783	825	29	2		2	GRIK4	11	120745883	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	2229715	120745883	14260633	60	27228											
CDON	50937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	125880565	125880565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	125880565	A	T	125880565	3	4	463	1	0	0	0	0	1	0	0	0	3172	101	4	5	2623	5	CDON	11	125880565	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	5134682	125880565	9125951	61	27229											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2716231	2716231	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	2716231	C	T	2716231	2	4	463	1	0	0	0	0	0	0	0	1	2542	564	20	2		2	CACNA1C	12	2716231	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		2716231	131135664	62	27230											
SLC2A14	144195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7982586	7982586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	7982586	T	A	7982586	3	1	463	1	0	0	0	0	1	0	0	0	14556	1435	50	5	1232	5	SLC2A14	12	7982586	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	5266355	7982586	125869309	63	27231											
H2AFJ	55766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	14927683	14927684	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	14927684	-	T	14927683	7	5	463	1	0	1	1	0	0	0	0	0	6933	1020	36	0	281	0	H2AFJ	12	14927683	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	6945097	14927683	118924212	64	27232											
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46633478	46633478	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	46633478	T	A	46633478	3	1	463	1	0	0	0	0	1	0	0	0	14614	1841	64	5	1417	5	SLC38A1	12	46633478	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	31705795	46633478	87218417	65	27233											
TCTN1	79600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111070319	111070319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	111070319	C	T	111070319	3	4	463	1	0	0	0	0	1	0	0	0	15734	855	30	2	785	2	TCTN1	12	111070319	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	64436841	111070319	22781576	66	27234											
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111908459	111908459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	111908459	G	C	111908459	3	2	463	1	0	0	0	0	1	0	0	0	1211	1203	42	4	883	4	ATXN2	12	111908459	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	838140	111908459	21943436	67	27235											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123806180	123806180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	123806180	T	C	123806180	3	2	463	1	0	0	0	0	1	0	0	0	13875	1493	52	3	2020	3	SBNO1	12	123806180	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	11897721	123806180	10045715	68	27236											
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64915025	64915025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	64915025	A	C	64915025	3	2	463	1	0	0	0	0	1	0	0	0	9934	246	9	5	2359	5	MTHFD1	14	64915025	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08		64915025	42434515	69	27237											
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81744521	81744521	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	81744521	G	A	81744521	2	1	463	1	0	0	0	0	0	0	0	1	15330	1020	36	2		2	STON2	14	81744521	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	16829496	81744521	25605019	70	27238											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96784101	96784101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	96784101	C	G	96784101	3	3	463	1	0	0	0	0	1	0	0	0	1094	797	28	4	3361	4	ATG2B	14	96784101	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	15039580	96784101	10565439	71	27239											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	77087751	77087751	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	77087751	A	T	77087751	2	4	463	1	0	0	0	0	0	0	0	1	13891	262	10	5		5	SCAPER	15	77087751	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08		77087751	25443641	72	27240											
TMED3	23423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79606106	79606106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	79606106	C	G	79606106	3	3	463	1	0	0	0	0	1	0	0	0	16017	565	20	4	182	4	TMED3	15	79606106	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	2518355	79606106	22925286	73	27241											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2808492	2808492	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	2808492	T	A	2808492	3	1	463	1	0	0	0	0	1	0	0	0	15181	1722	60	5	551	5	SRRM2	16	2808492	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08		2808492	87546261	74	27242											
SRCAP	10847	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30750805	30750805	+	Missense_Mutation	SNP	T	T	A	rs142948420	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	30750805	T	A	30750805	3	1	463	1	0	0	0	0	1	0	0	0	15147	1664	58	5	9570	5	SRCAP	16	30750805	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	27942313	30750805	59603948	75	27243											
HEATR3	55027	bcgsc.ca	37	16	50112873	50112889	+	Frame_Shift_Del	DEL	GGAATTTCTCATAAAAG	GGAATTTCTCATAAAAG	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	GGAATTTCTCATAAAAG	GGAATTTCTCATAAAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	-	50112889	GGAATTTCTCATAAAAG	-	50112873	7	5	463	1	0	1	0	1	0	0	0	0	7036	1001	35	0	1011	0	HEATR3	16	50112873	Frame_Shift_Del	DEL	GGAATTTCTCATAAAAG	TCGA-BQ-7059-01A-11D-1961-08	19362068	50112873	40241880	76	27244											
ELMO3	79767	broad.mit.edu;bcgsc.ca	37	16	67233265	67233265	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	67233265	C	A	67233265	2	1	463	1	0	0	0	0	0	0	0	1	5069	816	29	4		4	ELMO3	16	67233265	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	17120392	67233265	23121488	77	27245											
WSCD1	23302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6012935	6012935	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	6012935	C	G	6012935	2	3	463	1	0	0	0	0	0	0	0	1	17418	668	24	4		4	WSCD1	17	6012935	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		6012935	75182275	78	27246											
POLR2A	5430	ucsc.edu	37	17	7414839	7414839	+	Missense_Mutation	SNP	C	C	T	rs142714917		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	7414839	C	T	7414839	3	4	463	1	0	0	0	0	1	0	0	0	12221	759	27	1	4127	1	POLR2A	17	7414839	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	1401904	7414839	73780371	79	27247											
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33289281	33289281	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	33289281	T	C	33289281	2	2	463	1	0	0	0	0	0	0	0	1	18196	1461	51	3		3	ZNF830	17	33289281	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	25874442	33289281	47905929	80	27248											
NR1D1	9572	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	38253601	38253601	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	38253601	A	G	38253601	2	3	463	1	0	0	0	0	0	0	0	1	10622	175	7	3		3	NR1D1	17	38253601	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	4964320	38253601	42941609	81	27249											
NAGS	162417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42083544	42083544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	42083544	T	C	42083544	3	2	463	1	0	0	0	0	1	0	0	0	10152	1580	55	3	864	3	NAGS	17	42083544	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	3829943	42083544	39111666	82	27250											
DCXR	51181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79994491	79994491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	79994491	C	A	79994491	3	1	463	1	0	0	0	0	1	0	0	0	4321	855	30	4	373	4	DCXR	17	79994491	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	37910947	79994491	1200719	83	27251											
SCAMP4	113178	ucsc.edu	37	19	1924169	1924169	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	1924169	G	A	1924169	2	1	463	1	0	0	0	0	0	0	0	1	13886	1103	39	1		1	SCAMP4	19	1924169	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08		1924169	57204814	84	27252											
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7619510	7619510	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	7619510	G	A	7619510	2	1	463	1	0	0	0	0	0	0	0	1	12176	933	33	2		2	PNPLA6	19	7619510	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	5695341	7619510	51509473	85	27253											
QTRT1	81890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10823458	10823458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	10823458	A	G	10823458	3	3	463	1	0	0	0	0	1	0	0	0	12898	159	6	3	916	3	QTRT1	19	10823458	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	3203948	10823458	48305525	86	27254											
NOTCH3	4854	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	15289675	15289675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	15289675	C	G	15289675	3	3	463	1	0	0	0	0	1	0	0	0	10557	623	22	4	3213	4	NOTCH3	19	15289675	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	4466217	15289675	43839308	87	27255											
CEACAM5	1048	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42219580	42219580	+	Missense_Mutation	SNP	G	G	A	rs199857011	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	42219580	G	A	42219580	3	1	463	1	0	0	0	0	1	0	0	0	3197	1319	46	2	729	2	CEACAM5	19	42219580	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	26929905	42219580	16909403	88	27256											
RASIP1	54922	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49230414	49230414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	49230414	G	T	49230414	3	4	463	1	0	0	0	0	1	0	0	0	13091	1362	47	4	1042	4	RASIP1	19	49230414	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	7010834	49230414	9898569	89	27257											
IL4I1	259307	ucsc.edu	37	19	50397531	50397531	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	50397531	G	C	50397531	2	2	463	1	0	0	0	0	0	0	0	1	7704	1277	45	4		4	IL4I1	19	50397531	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	1167117	50397531	8731452	90	27258											
GPR32	2854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51273914	51273914	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	51273914	G	C	51273914	2	2	463	1	0	0	0	0	0	0	0	1	6695	1277	45	4		4	GPR32	19	51273914	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	876383	51273914	7855069	91	27259											
ZNF416	55659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58084258	58084258	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	58084258	A	G	58084258	2	3	463	1	0	0	0	0	0	0	0	1	17905	40	2	3		3	ZNF416	19	58084258	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	6810344	58084258	1044725	92	27260											
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47691344	47691344	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	47691344	A	G	47691344	2	3	463	1	0	0	0	0	0	0	0	1	3932	69	3	3		3	CSE1L	20	47691344	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08		47691344	15334176	93	27261											
BRWD1	54014	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	40582820	40582820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	40582820	G	T	40582820	3	4	463	1	0	0	0	0	1	0	0	0	1527	1020	36	4	3297	4	BRWD1	21	40582820	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08		40582820	7547075	94	27262											
TXN2	25828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36876727	36876727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	C	36876727	T	C	36876727	3	2	463	1	0	0	0	0	1	0	0	0	16803	1638	57	3	354	3	TXN2	22	36876727	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08		36876727	14427839	95	27263											
VSIG4	11326	ucsc.edu	37	X	65244923	65244923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	T	65244923	C	T	65244923	3	4	463	1	0	0	0	0	1	0	0	0	17237	478	17	2	331	2	VSIG4	23	65244923	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		65244923	90025637	96	27264											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122770007	122770007	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	G	122770007	A	G	122770007	2	3	463	1	0	0	0	0	0	0	0	1	15877	146	6	3		3	THOC2	23	122770007	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	57525084	122770007	32500553	97	27265											
ZNF275	10838	ucsc.edu	37	X	152613054	152613054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	A	152613054	G	A	152613054	3	1	463	1	0	0	0	0	1	0	0	0	17822	1000	35	2	921	2	ZNF275	23	152613054	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	29843047	152613054	2657506	98	27266											
MUL1	79594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	20827614	20827614	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	-	20827614	G	-	20827614	7	5	464	1	0	1	0	1	0	0	0	0	9991	991	35	0	434	0	MUL1	1	20827614	Frame_Shift_Del	DEL	G	TCGA-BQ-7060-01A-11D-1961-08		20827614	228423007	1	27267											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22903099	22903099	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	22903099	G	T	22903099	2	4	464	1	0	0	0	0	0	0	0	1	5175	1335	47	4		4	EPHA8	1	22903099	Silent	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	2075485	22903099	226347522	2	27268											
RCC1	1104	broad.mit.edu	37	1	28862497	28862497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	28862497	G	A	28862497	3	1	464	1	0	0	0	0	1	0	0	0	13186	1203	42	2	895	2	RCC1	1	28862497	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	5959398	28862497	220388124	3	27269											
RAB3B	5865	bcgsc.ca	37	1	52398990	52398990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	52398990	C	A	52398990	3	1	464	1	0	0	0	0	1	0	0	0	12945	608	21	4	195	4	RAB3B	1	52398990	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	23536493	52398990	196851631	4	27270											
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120458888	120458888	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	120458888	A	T	120458888	3	4	464	1	0	0	0	0	1	0	0	0	10555	246	9	5	962	5	NOTCH2	1	120458888	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	68059898	120458888	128791733	5	27271											
NBPF9	400818	broad.mit.edu	37	1	144823878	144823878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	C	144823878	A	C	144823878	3	2	464	1	0	0	0	0	1	0	0	0	10206	449	16	5	1971	5	NBPF9	1	144823878	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	24364990	144823878	104426743	6	27272											
ZNF619	285267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	40529349	40529349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	40529349	C	T	40529349	3	4	464	1	0	0	0	0	1	0	0	0	18055	826	29	2	1508	2	ZNF619	3	40529349	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		40529349	157493081	7	27273											
RPL29	6159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52029445	52029445	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	52029445	G	A	52029445	2	1	464	1	0	0	0	0	0	0	0	1	13591	1252	44	2		2	RPL29	3	52029445	Silent	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	11500096	52029445	145992985	8	27274											
HGD	3081	broad.mit.edu	37	3	120366724	120366724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	G	120366724	C	G	120366724	3	3	464	1	0	0	0	0	1	0	0	0	7091	608	21	4	900	4	HGD	3	120366724	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	68337279	120366724	77655706	9	27275											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121168266	121168266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	C	121168266	T	C	121168266	3	2	464	1	0	0	0	0	1	0	0	0	12215	1406	49	3	632	3	POLQ	3	121168266	Missense_Mutation	SNP	T	TCGA-BQ-7060-01A-11D-1961-08	801542	121168266	76854164	10	27276											
KPNA4	3840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160249255	160249255	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	G	160249255	A	G	160249255	2	3	464	1	0	0	0	0	0	0	0	1	8439	214	8	3		3	KPNA4	3	160249255	Silent	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	39080989	160249255	37773175	11	27277											
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186006591	186006591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	186006591	G	A	186006591	3	1	464	1	0	0	0	0	1	0	0	0	4471	942	33	2	2003	2	DGKG	3	186006591	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	25757336	186006591	12015839	12	27278											
MUC4	4585	broad.mit.edu	37	3	195516451	195516451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	C	195516451	G	C	195516451	3	2	464	1	0	0	0	0	1	0	0	0	9985	1348	47	4		4	MUC4	3	195516451	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	9509860	195516451	2505979	13	27279											
KLHL8	57563	broad.mit.edu;bcgsc.ca	37	4	88091355	88091355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	88091355	C	T	88091355	3	4	464	1	0	0	0	0	1	0	0	0	8402	594	21	2	461	2	KLHL8	4	88091355	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		88091355	103062921	14	27280											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	151271258	151271259	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	AT	151271259	-	AT	151271258	7	5	464	1	0	1	1	0	0	0	0	0	8938	10	1	0	1350	0	LRBA	4	151271258	Frame_Shift_Ins	INS	-	TCGA-BQ-7060-01A-11D-1961-08	63179903	151271258	39883018	15	27281											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176637880	176637880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	-	176637880	T	-	176637880	7	5	464	1	0	1	0	1	0	0	0	0	10676	1493	52	0	2494	0	NSD1	5	176637880	Frame_Shift_Del	DEL	T	TCGA-BQ-7060-01A-11D-1961-08		176637880	4277380	16	27282											
GRM4	2914	ucsc.edu	37	6	34100765	34100765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	34100765	C	T	34100765	3	4	464	1	0	0	0	0	1	0	0	0	6806	768	27	1	2269	1	GRM4	6	34100765	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		34100765	137014302	17	27283											
RUNX2	860	hgsc.bcm.edu;broad.mit.edu	37	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	G	45390466	A	G	45390466	2	3	464	1	0	0	0	0	0	0	0	1	13761	40	2	3		3	RUNX2	6	45390466	Silent	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	11289701	45390466	125724601	18	27284											
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	76542650	76542650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	-	76542650	A	-	76542650	7	5	464	1	0	1	0	1	0	0	0	0	10088	117	5	0	501	0	MYO6	6	76542650	Frame_Shift_Del	DEL	A	TCGA-BQ-7060-01A-11D-1961-08	31152184	76542650	94572417	19	27285											
C7orf57	136288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48081007	48081007	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	48081007	C	A	48081007	2	1	464	1	0	0	0	0	0	0	0	1	2406	813	29	4		4	C7orf57	7	48081007	Silent	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		48081007	111057656	20	27286											
ST7	7982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116863027	116863027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	G	116863027	A	G	116863027	3	3	464	1	0	0	0	0	1	0	0	0	15241	130	5	3	1813	3	ST7	7	116863027	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	68782020	116863027	42275636	21	27287											
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99161148	99161148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	99161148	G	A	99161148	3	1	464	1	0	0	0	0	1	0	0	0	12258	1029	36	2	1862	2	POP1	8	99161148	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08		99161148	47202874	22	27288											
ASPN	54829	hgsc.bcm.edu	37	9	95237030	95237030	+	Missense_Mutation	SNP	A	A	C	rs143279922		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	C	95237030	A	C	95237030	3	2	464	1	0	0	0	0	1	0	0	0	1057	214	8	5	1020	5	ASPN	9	95237030	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08		95237030	45976401	23	27289											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113163288	113163288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	C	113163288	A	C	113163288	3	2	464	1	0	0	0	0	1	0	0	0	15432	86	3	5	1083	5	SVEP1	9	113163288	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	17926258	113163288	28050143	24	27290											
KBTBD4	55709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47597183	47597183	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	-	47597183	T	-	47597183	7	5	464	1	0	1	0	1	0	0	0	0	8002	1617	56	0	906	0	KBTBD4	11	47597183	Frame_Shift_Del	DEL	T	TCGA-BQ-7060-01A-11D-1961-08		47597183	87409333	25	27291											
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57085299	57085299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	57085299	G	A	57085299	3	1	464	1	0	0	0	0	1	0	0	0	16332	1000	35	2	4430	2	TNKS1BP1	11	57085299	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	9488116	57085299	77921217	26	27292											
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41905433	41905433	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	41905433	A	T	41905433	3	4	464	1	0	0	0	0	1	0	0	0	10126	101	4	5	865	5	NAA16	13	41905433	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08		41905433	73264445	27	27293											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20841196	20841196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	20841196	C	T	20841196	3	4	464	1	0	0	0	0	1	0	0	0	15771	864	30	2	990	2	TEP1	14	20841196	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		20841196	86508344	28	27294											
AHNAK2	113146	ucsc.edu	37	14	105415291	105415291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	105415291	G	A	105415291	3	1	464	1	0	0	0	0	1	0	0	0	415	942	33	2	10894	2	AHNAK2	14	105415291	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	84574095	105415291	1934249	29	27295											
NDNL2	56160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	29561225	29561225	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	C	29561225	G	C	29561225	3	2	464	1	0	0	0	0	1	0	0	0	10255	1095	38	4	233	4	NDNL2	15	29561225	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08		29561225	72970167	30	27296											
ARHGAP11A	9824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	32928906	32928906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	G	32928906	T	G	32928906	3	3	464	1	0	0	0	0	1	0	0	0	863	1809	63	5	2001	5	ARHGAP11A	15	32928906	Missense_Mutation	SNP	T	TCGA-BQ-7060-01A-11D-1961-08	3367681	32928906	69602486	31	27297											
NR2F2	7026	broad.mit.edu	37	15	96877563	96877563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	G	96877563	C	G	96877563	3	3	464	1	0	0	0	0	1	0	0	0	10635	623	22	4	754	4	NR2F2	15	96877563	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	63948657	96877563	5653829	32	27298											
MAPK8IP3	23162	hgsc.bcm.edu	37	16	1817800	1817807	+	Frame_Shift_Del	DEL	CCACAGGC	CCACAGGC	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	CCACAGGC	CCACAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	-	1817807	CCACAGGC	-	1817800	7	5	464	1	0	1	0	1	0	0	0	0	9293	638	22	0		0	MAPK8IP3	16	1817800	Frame_Shift_Del	DEL	CCACAGGC	TCGA-BQ-7060-01A-11D-1961-08		1817800	88536953	33	27299											
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19490814	19490814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	G	19490814	C	G	19490814	3	3	464	1	0	0	0	0	1	0	0	0	16000	913	32	4	2591	4	TMC5	16	19490814	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	17673014	19490814	70863939	34	27300											
EEF2K	29904	ucsc.edu	37	16	22274500	22274500	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	22274500	C	T	22274500	4	4	464	1	0	0	0	0	0	1	0	0	4932	644	23	1	1411	1	EEF2K	16	22274500	Nonsense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	2783686	22274500	68080253	35	27301											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31383749	31383749	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	31383749	G	A	31383749	2	1	464	1	0	0	0	0	0	0	0	1	7896	1074	38	1		1	ITGAX	16	31383749	Silent	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	9109249	31383749	58971004	36	27302											
C16orf70	80262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67168085	67168085	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	C	67168085	T	C	67168085	2	2	464	1	0	0	0	0	0	0	0	1	1831	1461	51	3		3	C16orf70	16	67168085	Silent	SNP	T	TCGA-BQ-7060-01A-11D-1961-08	35784336	67168085	23186668	37	27303											
MYH13	8735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10267725	10267725	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	10267725	C	T	10267725	2	4	464	1	0	0	0	0	0	0	0	1	10039	639	23	1		1	MYH13	17	10267725	Silent	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		10267725	70927485	38	27304											
ERAL1	26284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27182278	27182278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	C	27182278	T	C	27182278	3	2	464	1	0	0	0	0	1	0	0	0	5204	1493	52	3	228	3	ERAL1	17	27182278	Missense_Mutation	SNP	T	TCGA-BQ-7060-01A-11D-1961-08	16914553	27182278	54012932	39	27305											
DLGAP1	9229	broad.mit.edu;bcgsc.ca	37	18	3499238	3499238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	3499238	G	T	3499238	3	4	464	1	0	0	0	0	1	0	0	0	4561	1261	44	4	58	4	DLGAP1	18	3499238	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08		3499238	74578010	40	27306											
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9453288	9453288	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	-	9453288	A	-	9453288	7	5	464	1	0	1	0	1	0	0	0	0	18002	233	9	0	1175	0	ZNF559	19	9453288	Frame_Shift_Del	DEL	A	TCGA-BQ-7060-01A-11D-1961-08		9453288	49675695	41	27307	337	2									
ZNF559	84527	hgsc.bcm.edu;bcgsc.ca	37	19	9453293	9453293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	G	9453293	C	G	9453293	3	3	464	1	0	0	0	0	1	0	0	0	18002	739	26	4	1180	4	ZNF559	19	9453293	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	5	9453293	49675690	42	27308	337	2									
HSPBP1	23640	ucsc.edu	37	19	55777303	55777303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	A	55777303	G	A	55777303	3	1	464	1	0	0	0	0	1	0	0	0	7433	1086	38	1	247	1	HSPBP1	19	55777303	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	46324010	55777303	3351680	43	27309											
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29445350	29445350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	C	29445350	T	C	29445350	3	2	464	1	0	0	0	0	1	0	0	0	18225	1667	58	3	907	3	ZNRF3	22	29445350	Missense_Mutation	SNP	T	TCGA-BQ-7060-01A-11D-1961-08		29445350	21859216	44	27310											
BEND2	139105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18195783	18195783	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	18195783	A	T	18195783	2	4	464	1	0	0	0	0	0	0	0	1	1398	10	1	5		5	BEND2	23	18195783	Silent	SNP	A	TCGA-BQ-7060-01A-11D-1961-08		18195783	137074777	45	27311											
KDM6A	7403	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44733231	44733231	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	T	44733231	A	T	44733231	4	4	464	1	0	0	0	0	0	1	0	0	8144	131	5	5	229	5	KDM6A	23	44733231	Nonsense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	26537448	44733231	110537329	46	27312											
KIF1B	23095	ucsc.edu	37	1	10328256	10328256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	10328256	G	A	10328256	3	1	465	1	0	0	0	0	1	0	0	0	8291	1087	38	1	677	1	KIF1B	1	10328256	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		10328256	238922365	1	27313											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11307790	11307790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	11307790	C	A	11307790	3	1	465	1	0	0	0	0	1	0	0	0	9961	521	18	4	6736	4	MTOR	1	11307790	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	979534	11307790	237942831	2	27314											
ZMYM6	9204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	35476600	35476600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	35476600	G	A	35476600	3	1	465	1	0	0	0	0	1	0	0	0	17716	1087	38	1	2909	1	ZMYM6	1	35476600	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	24168810	35476600	213774021	3	27315											
GLMN	11146	hgsc.bcm.edu;broad.mit.edu	37	1	92712096	92712096	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	92712096	C	G	92712096	2	3	465	1	0	0	0	0	0	0	0	1	6455	842	30	4		4	GLMN	1	92712096	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	57235496	92712096	156538525	4	27316											
LCE2A	353139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152671691	152671691	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	152671691	G	C	152671691	3	2	465	1	0	0	0	0	1	0	0	0	8672	1319	46	4	316	4	LCE2A	1	152671691	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	59959595	152671691	96578930	5	27317											
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182850707	182850707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	182850707	A	G	182850707	3	3	465	1	0	0	0	0	1	0	0	0	4518	449	16	3	2929	3	DHX9	1	182850707	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	30179016	182850707	66399914	6	27318											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	197073973	197073974	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	197073974	-	A	197073973	7	5	465	1	0	1	1	0	0	0	0	0	1056	1406	49	0	6069	0	ASPM	1	197073973	Frame_Shift_Ins	INS	-	TCGA-BQ-7061-01A-11D-1961-08	14223266	197073973	52176648	7	27319											
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27317347	27317347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	27317347	T	A	27317347	3	1	465	1	0	0	0	0	1	0	0	0	8156	1841	64	5	222	5	KHK	2	27317347	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08		27317347	215882026	8	27320											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61450209	61450209	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	61450209	G	C	61450209	3	2	465	1	0	0	0	0	1	0	0	0	17077	1066	37	4	2973	4	USP34	2	61450209	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	34132862	61450209	181749164	9	27321											
ZNF638	27332	broad.mit.edu	37	2	71576384	71576384	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	71576384	T	G	71576384	3	3	465	1	0	0	0	0	1	0	0	0	18067	1461	51	5	302	5	ZNF638	2	71576384	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	10126175	71576384	171622989	10	27322											
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	143986166	143986166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	143986166	T	C	143986166	3	2	465	1	0	0	0	0	1	0	0	0	866	1783	62	3	327	3	ARHGAP15	2	143986166	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	72409782	143986166	99213207	11	27323											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168103542	168103542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	168103542	T	A	168103542	3	1	465	1	0	0	0	0	1	0	0	0	17442	1432	50	5	5670	5	XIRP2	2	168103542	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	24117376	168103542	75095831	12	27324											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	220309733	220309733	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	220309733	C	G	220309733	3	3	465	1	0	0	0	0	1	0	0	0	15048	594	21	4	675	4	SPEG	2	220309733	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	52206191	220309733	22889640	13	27325											
MRPL44	65080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	224824513	224824513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	224824513	A	G	224824513	3	3	465	1	0	0	0	0	1	0	0	0	9815	217	8	3	448	3	MRPL44	2	224824513	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	4514780	224824513	18374860	14	27326											
SP110	3431	broad.mit.edu	37	2	231050754	231050754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	231050754	A	G	231050754	3	3	465	1	0	0	0	0	1	0	0	0	14974	275	10	3	1006	3	SP110	2	231050754	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	6226241	231050754	12148619	15	27327											
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37365472	37365472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	37365472	G	A	37365472	3	1	465	1	0	0	0	0	1	0	0	0	6562	971	34	2	2219	2	GOLGA4	3	37365472	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		37365472	160656958	16	27328											
ACY1	95	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52023049	52023049	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	52023049	G	C	52023049	2	2	465	1	0	0	0	0	0	0	0	1	226	1306	46	4		4	ACY1	3	52023049	Silent	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	14657577	52023049	145999381	17	27329											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52651555	52651555	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	52651555	C	T	52651555	5	4	465	1	0	0	0	0	0	0	1	0	11498	579	20	2	3427	2	PBRM1	3	52651555	Splice_Site	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	628506	52651555	145370875	18	27330											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113377559	113377559	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	113377559	T	C	113377559	2	2	465	1	0	0	0	0	0	0	0	1	8275	1567	55	3		3	KIAA2018	3	113377559	Silent	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	60726004	113377559	84644871	19	27331											
CD86	942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121822644	121822644	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	121822644	C	G	121822644	3	3	465	1	0	0	0	0	1	0	0	0	3045	623	22	4	360	4	CD86	3	121822644	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	8445085	121822644	76199786	20	27332											
USP38	84640	hgsc.bcm.edu;bcgsc.ca	37	4	144141548	144141548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	144141548	G	C	144141548	3	2	465	1	0	0	0	0	1	0	0	0	17081	1377	48	4	3106	4	USP38	4	144141548	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		144141548	47012728	21	27333											
SMAD1	4086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146475084	146475084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	146475084	T	G	146475084	3	3	465	1	0	0	0	0	1	0	0	0	14770	1829	64	5	1164	5	SMAD1	4	146475084	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	2333536	146475084	44679192	22	27334											
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	185339324	185339324	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	185339324	G	C	185339324	3	2	465	1	0	0	0	0	1	0	0	0	7835	1280	45	4	661	4	IRF2	4	185339324	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	38864240	185339324	5814952	23	27335											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187525694	187525694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	187525694	A	G	187525694	3	3	465	1	0	0	0	0	1	0	0	0	5696	188	7	3	3421	3	FAT1	4	187525694	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	2186370	187525694	3628582	24	27336											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7766912	7766912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	7766912	T	G	7766912	3	3	465	1	0	0	0	0	1	0	0	0	294	1783	62	5	2273	5	ADCY2	5	7766912	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08		7766912	173148348	25	27337											
UGT3A2	167127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36039694	36039694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	36039694	A	C	36039694	3	2	465	1	0	0	0	0	1	0	0	0	16976	127	5	5	623	5	UGT3A2	5	36039694	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	28272782	36039694	144875566	26	27338											
GFRA3	2676	hgsc.bcm.edu	37	5	137610073	137610073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	137610073	A	G	137610073	3	3	465	1	0	0	0	0	1	0	0	0	6356	275	10	3	1193	3	GFRA3	5	137610073	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	101570379	137610073	43305187	27	27339											
SNRPC	6631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	34730469	34730469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	34730469	T	C	34730469	3	2	465	1	0	0	0	0	1	0	0	0	14876	1493	52	3	159	3	SNRPC	6	34730469	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08		34730469	136384598	28	27340											
PPARD	5467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35392132	35392132	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	35392132	A	C	35392132	2	2	465	1	0	0	0	0	0	0	0	1	12305	204	8	5		5	PPARD	6	35392132	Silent	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	661663	35392132	135722935	29	27341											
TCTE1	202500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44254102	44254102	+	Missense_Mutation	SNP	C	C	T	rs149566851	bycluster;by1000genomes;alternate_allele	TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	44254102	C	T	44254102	3	4	465	1	0	0	0	0	1	0	0	0	15729	652	23	1	1072	1	TCTE1	6	44254102	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	8861970	44254102	126860965	30	27342											
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46660547	46660547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	46660547	G	C	46660547	3	2	465	1	0	0	0	0	1	0	0	0	15746	1000	35	4	4684	4	TDRD6	6	46660547	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	2406445	46660547	124454520	31	27343											
FAM46A	55603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	82461531	82461531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	82461531	C	T	82461531	3	4	465	1	0	0	0	0	1	0	0	0	5572	893	31	1	1008	1	FAM46A	6	82461531	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	35800984	82461531	88653536	32	27344											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117706858	117706858	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	117706858	T	A	117706858	2	1	465	1	0	0	0	0	0	0	0	1	13544	1770	62	5		5	ROS1	6	117706858	Silent	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	35245327	117706858	53408209	33	27345											
PDE7B	27115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136512787	136512788	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	136512788	-	A	136512787	7	5	465	1	0	1	1	0	0	0	0	0	11659	1175	41	0	1212	0	PDE7B	6	136512787	Frame_Shift_Ins	INS	-	TCGA-BQ-7061-01A-11D-1961-08	18805929	136512787	34602280	34	27346											
RAET1G	353091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150240371	150240371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	150240371	T	C	150240371	3	2	465	1	0	0	0	0	1	0	0	0	13013	1435	50	3	577	3	RAET1G	6	150240371	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	13727584	150240371	20874696	35	27347											
PSMB1	5689	broad.mit.edu	37	6	170844433	170844433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	170844433	G	A	170844433	3	1	465	1	0	0	0	0	1	0	0	0	12684	1086	38	1	128	1	PSMB1	6	170844433	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	20604062	170844433	270634	36	27348											
HEATR2	54919	broad.mit.edu	37	7	813765	813765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	813765	C	T	813765	3	4	465	1	0	0	0	0	1	0	0	0	7035	768	27	1	2050	1	HEATR2	7	813765	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08		813765	158324898	37	27349											
HECW1	23072	broad.mit.edu	37	7	43581576	43581576	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	43581576	T	A	43581576	2	1	465	1	0	0	0	0	0	0	0	1	7049	1741	61	5		5	HECW1	7	43581576	Silent	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	42767811	43581576	115557087	38	27350											
GNAI1	2770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	79842142	79842142	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	79842142	A	G	79842142	2	3	465	1	0	0	0	0	0	0	0	1	6511	11	1	3		3	GNAI1	7	79842142	Silent	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	36260566	79842142	79296521	39	27351											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92734539	92734539	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	92734539	T	G	92734539	3	3	465	1	0	0	0	0	1	0	0	0	13839	1783	62	5	3901	5	SAMD9	7	92734539	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	12892397	92734539	66404124	40	27352											
EPHB4	2050	broad.mit.edu	37	7	100417814	100417814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	100417814	G	T	100417814	3	4	465	1	0	0	0	0	1	0	0	0	5179	1116	39	4	2102	4	EPHB4	7	100417814	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	7683275	100417814	58720849	41	27353											
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103029511	103029511	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	103029511	A	G	103029511	2	3	465	1	0	0	0	0	0	0	0	1	14533	224	8	3		3	SLC26A5	7	103029511	Silent	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	2611697	103029511	56109152	42	27354											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138602963	138602963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	138602963	T	C	138602963	3	2	465	1	0	0	0	0	1	0	0	0	8251	1667	58	3	4519	3	KIAA1549	7	138602963	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	35573452	138602963	20535700	43	27355											
TMEM176B	28959	broad.mit.edu;bcgsc.ca	37	7	150493608	150493608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	150493608	G	C	150493608	3	2	465	1	0	0	0	0	1	0	0	0	16105	1348	47	4	786	4	TMEM176B	7	150493608	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	11890645	150493608	8645055	44	27356											
VCPIP1	80124	hgsc.bcm.edu	37	8	67578598	67578621	+	In_Frame_Del	DEL	TTAATGTCCTCCAGAGTGTCATGC	TTAATGTCCTCCAGAGTGTCATGC	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	TTAATGTCCTCCAGAGTGTCATGC	TTAATGTCCTCCAGAGTGTCATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	-	67578621	TTAATGTCCTCCAGAGTGTCATGC	-	67578598	7	5	465	1	0	1	0	1	0	0	0	0	17153	1609	56	0	3084	0	VCPIP1	8	67578598	In_Frame_Del	DEL	TTAATGTCCTCCAGAGTGTCATGC	TCGA-BQ-7061-01A-11D-1961-08		67578598	78785424	45	27357											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	77617295	77617296	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	TT	77617296	GA	TT	77617295	3	4	465	1	0	0	0	0	1	0	0	0	17647	1161	41	4	974	4	ZFHX4	8	77617295	Missense_Mutation	DNP	GA	TCGA-BQ-7061-01A-11D-1961-08	10038697	77617295	68746727	46	27358											
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	27349330	27349331	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	TCA	27349331	-	TCA	27349330	7	5	465	1	0	1	1	0	0	0	0	0	654	1841	64	0	3704	0	ANKRD26	10	27349330	In_Frame_Ins	INS	-	TCGA-BQ-7061-01A-11D-1961-08		27349330	108185417	47	27359											
ABCC2	1244	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101569944	101569944	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	101569944	C	T	101569944	2	4	465	1	0	0	0	0	0	0	0	1	53	477	17	2		2	ABCC2	10	101569944	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	74220614	101569944	33964803	48	27360											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104112265	104112265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	104112265	C	G	104112265	3	3	465	1	0	0	0	0	1	0	0	0	6278	797	28	4	596	4	GBF1	10	104112265	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	2542321	104112265	31422482	49	27361											
TRIM68	55128	hgsc.bcm.edu;broad.mit.edu	37	11	4621934	4621934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	4621934	A	G	4621934	3	3	465	1	0	0	0	0	1	0	0	0	16553	420	15	3	431	3	TRIM68	11	4621934	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08		4621934	130384582	50	27362											
RTN3	10313	hgsc.bcm.edu	37	11	63487952	63487952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	63487952	G	C	63487952	3	2	465	1	0	0	0	0	1	0	0	0	13740	943	33	4	1988	4	RTN3	11	63487952	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	58866018	63487952	71518564	51	27363											
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810436	65810436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	65810436	G	C	65810436	3	2	465	1	0	0	0	0	1	0	0	0	6206	1232	43	4	461	4	GAL3ST3	11	65810436	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	2322484	65810436	69196080	52	27364											
GRM5	2915	broad.mit.edu	37	11	88242044	88242044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	88242044	G	A	88242044	3	1	465	1	0	0	0	0	1	0	0	0	6807	1203	42	2	287	2	GRM5	11	88242044	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	22431608	88242044	46764472	53	27365											
MMP27	64066	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102567479	102567479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	102567479	G	A	102567479	3	1	465	1	0	0	0	0	1	0	0	0	9671	1348	47	2	858	2	MMP27	11	102567479	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	14325435	102567479	32439037	54	27366											
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111225200	111225200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	111225200	A	G	111225200	3	3	465	1	0	0	0	0	1	0	0	0	12277	420	15	3	217	3	POU2AF1	11	111225200	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	8657721	111225200	23781316	55	27367											
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	134038822	134038822	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	-	134038822	G	-	134038822	7	5	465	1	0	1	0	1	0	0	0	0	10213	1357	47	0	1311	0	NCAPD3	11	134038822	Frame_Shift_Del	DEL	G	TCGA-BQ-7061-01A-11D-1961-08	22813622	134038822	967694	56	27368											
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	346409	346409	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	346409	A	T	346409	3	4	465	1	0	0	0	0	1	0	0	0	14689	188	7	5	1237	5	SLC6A13	12	346409	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08		346409	133505486	57	27369											
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	7046365	7046365	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	7046365	C	G	7046365	2	3	465	1	0	0	0	0	0	0	0	1	1111	610	22	4		4	ATN1	12	7046365	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	6699956	7046365	126805530	58	27370											
TAS2R13	50838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11061866	11061866	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	11061866	A	C	11061866	3	2	465	1	0	0	0	0	1	0	0	0	15579	72	3	5	883	5	TAS2R13	12	11061866	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	4015501	11061866	122790029	59	27371											
GPR182	11318	broad.mit.edu	37	12	57389326	57389326	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	57389326	G	A	57389326	2	1	465	1	0	0	0	0	0	0	0	1	6684	1335	47	2		2	GPR182	12	57389326	Silent	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	46327460	57389326	76462569	60	27372											
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64041138	64041138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	64041138	A	T	64041138	3	4	465	1	0	0	0	0	1	0	0	0	4743	449	16	5	1752	5	DPY19L2	12	64041138	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	6651812	64041138	69810757	61	27373											
RFX4	5992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	107154995	107154995	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	107154995	T	A	107154995	2	1	465	1	0	0	0	0	0	0	0	1	13278	1596	56	5		5	RFX4	12	107154995	Silent	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	43113857	107154995	26696900	62	27374											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117655909	117655909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	117655909	T	C	117655909	3	2	465	1	0	0	0	0	1	0	0	0	10548	1812	63	3	81	3	NOS1	12	117655909	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	10500914	117655909	16195986	63	27375											
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	130919339	130919339	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	130919339	G	A	130919339	2	1	465	1	0	0	0	0	0	0	0	1	13376	1020	36	2		2	RIMBP2	12	130919339	Silent	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	13263430	130919339	2932556	64	27376											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20869208	20869208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	20869208	G	A	20869208	3	1	465	1	0	0	0	0	1	0	0	0	15771	1348	47	2	6587	2	TEP1	14	20869208	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		20869208	86480332	65	27377											
HERC2	8924	hgsc.bcm.edu	37	15	28447597	28447597	+	Missense_Mutation	SNP	A	A	G	rs113634395		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	28447597	A	G	28447597	3	3	465	1	0	0	0	0	1	0	0	0	7065	188	7	3	7320	3	HERC2	15	28447597	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08		28447597	74083795	66	27378											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42041819	42041837	+	Frame_Shift_Del	DEL	CTAATGTAATAAAACAAAA	CTAATGTAATAAAACAAAA	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	CTAATGTAATAAAACAAAA	CTAATGTAATAAAACAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	-	42041837	CTAATGTAATAAAACAAAA	-	42041819	7	5	465	1	0	1	0	1	0	0	0	0	9547	797	28	0	6076	0	MGA	15	42041819	Frame_Shift_Del	DEL	CTAATGTAATAAAACAAAA	TCGA-BQ-7061-01A-11D-1961-08	13594222	42041819	60489573	67	27379											
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43749140	43749140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	43749140	T	A	43749140	3	1	465	1	0	0	0	0	1	0	0	0	16395	1464	51	5	4335	5	TP53BP1	15	43749140	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	1707321	43749140	58782252	68	27380											
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	59501015	59501015	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	59501015	G	A	59501015	2	1	465	1	0	0	0	0	0	0	0	1	10079	1136	40	1		1	MYO1E	15	59501015	Silent	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	15751875	59501015	43030377	69	27381											
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63011987	63011987	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	63011987	C	G	63011987	3	3	465	1	0	0	0	0	1	0	0	0	15960	827	29	4	2985	4	TLN2	15	63011987	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	3510972	63011987	39519405	70	27382											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79264261	79264261	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	79264261	G	A	79264261	4	1	465	1	0	0	0	0	0	1	0	0	13085	1124	39	1	153	1	RASGRF1	15	79264261	Nonsense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	16252274	79264261	23267131	71	27383											
KIAA1024	23251	broad.mit.edu	37	15	79748657	79748657	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	79748657	C	T	79748657	2	4	465	1	0	0	0	0	0	0	0	1	8212	871	31	1		1	KIAA1024	15	79748657	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	484396	79748657	22782735	72	27384											
ROGDI	79641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4849743	4849743	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	4849743	G	C	4849743	3	2	465	1	0	0	0	0	1	0	0	0	13533	991	35	4	511	4	ROGDI	16	4849743	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		4849743	85505010	73	27385											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	15841744	15841744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	15841744	G	T	15841744	3	4	465	1	0	0	0	0	1	0	0	0	10038	1203	42	4	3812	4	MYH11	16	15841744	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	10992001	15841744	74513009	74	27386											
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21215430	21215430	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	21215430	T	A	21215430	3	1	465	1	0	0	0	0	1	0	0	0	18228	1580	55	5	1388	5	ZP2	16	21215430	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	5373686	21215430	69139323	75	27387											
FOXC2	2303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	86601010	86601010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	86601010	T	G	86601010	3	3	465	1	0	0	0	0	1	0	0	0	6002	1490	52	5	71	5	FOXC2	16	86601010	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	65385580	86601010	3753743	76	27388											
TSR1	55720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2232753	2232753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	2232753	A	T	2232753	3	4	465	1	0	0	0	0	1	0	0	0	16676	217	8	5	647	5	TSR1	17	2232753	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08		2232753	78962457	77	27389											
PITPNM3	83394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6375990	6375990	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	6375990	C	T	6375990	2	4	465	1	0	0	0	0	0	0	0	1	11959	564	20	2		2	PITPNM3	17	6375990	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	4143237	6375990	74819220	78	27390											
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190835	39190835	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	39190835	G	C	39190835	3	2	465	1	0	0	0	0	1	0	0	0	8510	1174	41	4	268	4	KRTAP1-3	17	39190835	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	32814845	39190835	42004375	79	27391	338	2									
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190845	39190845	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	39190845	G	C	39190845	3	2	465	1	0	0	0	0	1	0	0	0	8510	1357	47	4	278	4	KRTAP1-3	17	39190845	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	10	39190845	42004365	80	27392	338	2									
ST6GALNAC2	10610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74570497	74570497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	T	74570497	C	T	74570497	3	4	465	1	0	0	0	0	1	0	0	0	15236	768	27	1	841	1	ST6GALNAC2	17	74570497	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	35379652	74570497	6624713	81	27393											
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12639496	12639497	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	-	12639497	AG	-	12639496	7	5	465	1	0	1	0	1	0	0	0	0	18007	175	7	0	1655	0	ZNF564	19	12639496	Frame_Shift_Del	DEL	AG	TCGA-BQ-7061-01A-11D-1961-08		12639496	46489487	82	27394											
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13226494	13226494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	13226494	T	A	13226494	3	1	465	1	0	0	0	0	1	0	0	0	16573	1838	64	5	1636	5	TRMT1	19	13226494	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	586998	13226494	45902489	83	27395											
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16964967	16964967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	16964967	T	C	16964967	3	2	465	1	0	0	0	0	1	0	0	0	14339	1580	55	3	983	3	SIN3B	19	16964967	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	3738473	16964967	42164016	84	27396											
LSR	51599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35757260	35757260	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	35757260	A	G	35757260	5	3	465	1	0	0	0	0	0	0	1	0	9071	202	7	3	943	3	LSR	19	35757260	Splice_Site	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	18792293	35757260	23371723	85	27397											
C19orf55	148137	broad.mit.edu	37	19	36253153	36253153	+	Splice_Site	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	36253153	G	A	36253153	5	1	465	1	0	0	0	0	0	0	1	0	1939	985	34	2	457	2	C19orf55	19	36253153	Splice_Site	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	495893	36253153	22875830	86	27398											
ZSCAN4	201516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58187881	58187881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	G	58187881	C	G	58187881	3	3	465	1	0	0	0	0	1	0	0	0	18249	565	20	4	370	4	ZSCAN4	19	58187881	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	21934728	58187881	941102	87	27399											
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25198149	25198149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	25198149	G	C	25198149	3	2	465	1	0	0	0	0	1	0	0	0	5145	991	35	4	847	4	ENTPD6	20	25198149	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		25198149	37827371	88	27400											
ADRBK2	157	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26086189	26086189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	26086189	G	A	26086189	3	1	465	1	0	0	0	0	1	0	0	0	344	1087	38	1	1037	1	ADRBK2	22	26086189	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		26086189	25218377	89	27401											
GSPT2	23708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	51486959	51486960	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	TT	51486960	GC	TT	51486959	3	4	465	1	0	0	0	0	1	0	0	0	6834	1074	38	4	239	4	GSPT2	23	51486959	Missense_Mutation	DNP	GC	TCGA-BQ-7061-01A-11D-1961-08		51486959	103783601	90	27402											
LAS1L	81887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	64749564	64749564	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	64749564	C	A	64749564	4	1	465	1	0	0	0	0	0	1	0	0	8643	864	30	4	1535	4	LAS1L	23	64749564	Nonsense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	13262605	64749564	90520996	91	27403											
KIF4A	24137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69637856	69637856	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	69637856	T	C	69637856	5	2	465	1	0	0	0	0	0	0	1	0	8310	1652	57	3	3484	3	KIF4A	23	69637856	Splice_Site	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	4888292	69637856	85632704	92	27404											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	144904633	144904633	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	C	144904633	G	C	144904633	3	2	465	1	0	0	0	0	1	0	0	0	14756	1212	42	4	692	4	SLITRK2	23	144904633	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	75266777	144904633	10365927	93	27405	339	2									
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	144904634	144904635	+	Nonsense_Mutation	DNP	CT	CT	TA	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	TA	144904635	CT	TA	144904634	4	4	465	1	0	0	0	0	0	1	0	0	14756	796	28	2	693	2	SLITRK2	23	144904634	Nonsense_Mutation	DNP	CT	TCGA-BQ-7061-01A-11D-1961-08	1	144904634	10365926	94	27406	339	2									
OPN1MW2	728458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153496172	153496172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	A	153496172	C	A	153496172	3	1	465	1	0	0	0	0	1	0	0	0	10886	506	18	4	2037	4	OPN1MW2	23	153496172	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	8591538	153496172	1774388	95	27407											
NADK	65220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1686870	1686870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	1686870	A	T	1686870	3	4	466	1	0	0	0	0	1	0	0	0	10144	72	3	5	733	5	NADK	1	1686870	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08		1686870	247563751	1	27408											
RPL11	6135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24021204	24021204	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	24021204	T	G	24021204	3	3	466	1	0	0	0	0	1	0	0	0	13570	1841	64	5	333	5	RPL11	1	24021204	Missense_Mutation	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	22334334	24021204	225229417	2	27409											
ZSCAN20	7579	bcgsc.ca	37	1	33956714	33956714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	33956714	A	G	33956714	3	3	466	1	0	0	0	0	1	0	0	0	18244	304	11	3	874	3	ZSCAN20	1	33956714	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	9935510	33956714	215293907	3	27410											
CC2D1B	200014	hgsc.bcm.edu	37	1	52822691	52822691	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	52822691	C	G	52822691	3	3	466	1	0	0	0	0	1	0	0	0	2729	710	25	4	734	4	CC2D1B	1	52822691	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	18865977	52822691	196427930	4	27411											
LMO4	8543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	87805263	87805263	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	-	87805263	T	-	87805263	7	5	466	1	0	1	0	1	0	0	0	0	8861	1493	52	0	287	0	LMO4	1	87805263	Frame_Shift_Del	DEL	T	TCGA-BQ-7062-01A-11D-1961-08	34982572	87805263	161445358	5	27412											
KCND3	3752	bcgsc.ca	37	1	112525250	112525250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	112525250	G	T	112525250	3	4	466	1	0	0	0	0	1	0	0	0	8027	1368	48	4	1896	4	KCND3	1	112525250	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08	24719987	112525250	136725371	6	27413											
S100A7L2	645922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153409541	153409541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	153409541	C	A	153409541	3	1	466	1	0	0	0	0	1	0	0	0	13798	797	28	4	10	4	S100A7L2	1	153409541	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	40884291	153409541	95841080	7	27414											
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173839638	173839638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	C	173839638	T	C	173839638	3	2	466	1	0	0	0	0	1	0	0	0	17550	1406	49	3	277	3	ZBTB37	1	173839638	Missense_Mutation	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	20430097	173839638	75410983	8	27415											
NFASC	23114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	204923960	204923960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	204923960	C	A	204923960	3	1	466	1	0	0	0	0	1	0	0	0	10366	913	32	4	434	4	NFASC	1	204923960	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	31084322	204923960	44326661	9	27416											
FMN2	56776	bcgsc.ca	37	1	240371517	240371517	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	240371517	T	A	240371517	2	1	466	1	0	0	0	0	0	0	0	1	5957	1770	62	5		5	FMN2	1	240371517	Silent	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	35447557	240371517	8879104	10	27417											
KIF5C	3800	ucsc.edu	37	2	149799207	149799207	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	149799207	G	A	149799207	2	1	466	1	0	0	0	0	0	0	0	1	8314	1364	48	2		2	KIF5C	2	149799207	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		149799207	93400166	11	27418											
DIS3L2	129563	hgsc.bcm.edu	37	2	233199380	233199380	+	Missense_Mutation	SNP	A	A	G	rs2697798		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	233199380	A	G	233199380	3	3	466	1	0	0	0	0	1	0	0	0	4539	217	8	3	2399	3	DIS3L2	2	233199380	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	83400173	233199380	9999993	12	27419											
ALPI	248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233322816	233322816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	233322816	C	T	233322816	3	4	466	1	0	0	0	0	1	0	0	0	543	623	22	2	995	2	ALPI	2	233322816	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	123436	233322816	9876557	13	27420											
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47455522	47455522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	47455522	C	A	47455522	3	1	466	1	0	0	0	0	1	0	0	0	13890	478	17	4	181	4	SCAP	3	47455522	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		47455522	150566908	14	27421											
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48459373	48459373	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	48459373	C	A	48459373	2	1	466	1	0	0	0	0	0	0	0	1	12130	639	23	4		4	PLXNB1	3	48459373	Silent	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	1003851	48459373	149563057	15	27422											
NDUFAF3	25915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49059877	49059877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	49059877	A	T	49059877	3	4	466	1	0	0	0	0	1	0	0	0	10283	391	14	5	182	5	NDUFAF3	3	49059877	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	600504	49059877	148962553	16	27423											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52432935	52432935	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	52432935	A	G	52432935	2	3	466	1	0	0	0	0	0	0	0	1	4599	407	15	3		3	DNAH1	3	52432935	Silent	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	3373058	52432935	145589495	17	27424											
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186383957	186383957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	186383957	A	T	186383957	3	4	466	1	0	0	0	0	1	0	0	0	7361	391	14	5	139	5	HRG	3	186383957	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	133951022	186383957	11638473	18	27425											
FTMT	94033	broad.mit.edu;bcgsc.ca	37	5	121187826	121187826	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	121187826	G	T	121187826	2	4	466	1	0	0	0	0	0	0	0	1	6092	1219	43	4		4	FTMT	5	121187826	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		121187826	59727434	19	27426											
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	149515196	149515213	+	In_Frame_Del	DEL	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	-	149515213	CCGTGTCTAGCCCAGTGA	-	149515196	7	5	466	1	0	1	0	1	0	0	0	0	11669	632	22	0	3118	0	PDGFRB	5	149515196	In_Frame_Del	DEL	CCGTGTCTAGCCCAGTGA	TCGA-BQ-7062-01A-11D-1961-08	28327370	149515196	31400064	20	27427											
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	101296249	101296249	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	101296249	T	A	101296249	2	1	466	1	0	0	0	0	0	0	0	1	1033	1744	61	5		5	ASCC3	6	101296249	Silent	SNP	T	TCGA-BQ-7062-01A-11D-1961-08		101296249	69818818	21	27428											
SPDYE6	729597	broad.mit.edu	37	7	101988946	101988946	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	101988946	G	A	101988946	2	1	466	1	0	0	0	0	0	0	0	1	15045	1161	41	2		2	SPDYE6	7	101988946	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		101988946	57149717	22	27429											
KIAA1549	57670	hgsc.bcm.edu	37	7	138546145	138546145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	138546145	A	G	138546145	3	3	466	1	0	0	0	0	1	0	0	0	8251	391	14	3	885	3	KIAA1549	7	138546145	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	36557199	138546145	20592518	23	27430											
NOM1	64434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	156752614	156752614	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	-	156752614	A	-	156752614	7	5	466	1	0	1	0	1	0	0	0	0	10537	247	9	0	1392	0	NOM1	7	156752614	Frame_Shift_Del	DEL	A	TCGA-BQ-7062-01A-11D-1961-08	18206469	156752614	2386049	24	27431											
TERF1	7013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	73921183	73921183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	73921183	C	T	73921183	3	4	466	1	0	0	0	0	1	0	0	0	15773	739	26	2	64	2	TERF1	8	73921183	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		73921183	72442839	25	27432											
PSCA	8000	hgsc.bcm.edu	37	8	143762846	143762846	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	143762846	C	G	143762846	3	3	466	1	0	0	0	0	1	0	0	0	12655	768	27	4	133	4	PSCA	8	143762846	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	69841663	143762846	2601176	26	27433											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35698169	35698169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	35698169	C	G	35698169	3	3	466	1	0	0	0	0	1	0	0	0	15959	753	26	4	261	4	TLN1	9	35698169	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		35698169	105515262	27	27434											
ITGB1	3688	broad.mit.edu	37	10	33208866	33208866	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	33208866	A	G	33208866	2	3	466	1	0	0	0	0	0	0	0	1	7897	175	7	3		3	ITGB1	10	33208866	Silent	SNP	A	TCGA-BQ-7062-01A-11D-1961-08		33208866	102325881	28	27435											
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91177427	91177427	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	91177427	A	G	91177427	2	3	466	1	0	0	0	0	0	0	0	1	7532	11	1	3		3	IFIT5	10	91177427	Silent	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	57968561	91177427	44357320	29	27436											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	124352013	124352013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	124352013	G	A	124352013	3	1	466	1	0	0	0	0	1	0	0	0	4579	1087	38	1	2480	1	DMBT1	10	124352013	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08	33174586	124352013	11182734	30	27437											
MUC5B	727897	hgsc.bcm.edu	37	11	1268402	1268402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	1268402	G	A	1268402	3	1	466	1	0	0	0	0	1	0	0	0	9986	971	34	2	10423	2	MUC5B	11	1268402	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		1268402	133738114	31	27438											
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47726183	47726183	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	-	47726183	G	-	47726183	7	5	466	1	0	1	0	1	0	0	0	0	376	929	33	0	2262	0	AGBL2	11	47726183	Frame_Shift_Del	DEL	G	TCGA-BQ-7062-01A-11D-1961-08	46457781	47726183	87280333	32	27439											
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62489600	62489600	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	62489600	C	A	62489600	4	1	466	1	0	0	0	0	0	1	0	0	7282	922	32	4	927	4	HNRNPUL2	11	62489600	Nonsense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	14763417	62489600	72516916	33	27440											
RAD51AP1	10635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4657343	4657343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	4657343	A	T	4657343	3	4	466	1	0	0	0	0	1	0	0	0	12999	434	15	5	478	5	RAD51AP1	12	4657343	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08		4657343	129194552	34	27441											
LMBR1L	55716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49500795	49500795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	49500795	G	T	49500795	3	4	466	1	0	0	0	0	1	0	0	0	8848	1000	35	4	1427	4	LMBR1L	12	49500795	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08	44843452	49500795	84351100	35	27442											
TMEM19	55266	broad.mit.edu	37	12	72092800	72092800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	72092800	C	A	72092800	3	1	466	1	0	0	0	0	1	0	0	0	16125	652	23	4	776	4	TMEM19	12	72092800	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	22592005	72092800	61759095	36	27443											
PAH	5053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	103234258	103234258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	103234258	A	G	103234258	3	3	466	1	0	0	0	0	1	0	0	0	11401	43	2	3	131	3	PAH	12	103234258	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	31141458	103234258	30617637	37	27444											
CHRNA5	1138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78885562	78885562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	C	78885562	A	C	78885562	3	2	466	1	0	0	0	0	1	0	0	0	3388	359	13	5	1396	5	CHRNA5	15	78885562	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08		78885562	23645830	38	27445											
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4029168	4029168	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	4029168	G	A	4029168	2	1	466	1	0	0	0	0	0	0	0	1	301	1103	39	1		1	ADCY9	16	4029168	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		4029168	86325585	39	27446											
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20787239	20787239	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	20787239	C	T	20787239	2	4	466	1	0	0	0	0	0	0	0	1	185	564	20	2		2	ACSM3	16	20787239	Silent	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	16758071	20787239	69567514	40	27447											
WDR81	124997	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	1631524	1631524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	1631524	G	A	1631524	3	1	466	1	0	0	0	0	1	0	0	0	17342	1377	48	2	3335	2	WDR81	17	1631524	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		1631524	79563686	41	27448											
PELP1	27043	hgsc.bcm.edu	37	17	4575451	4575451	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	C	4575451	T	C	4575451	2	2	466	1	0	0	0	0	0	0	0	1	11732	1606	56	3		3	PELP1	17	4575451	Silent	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	2943927	4575451	76619759	42	27449											
RNF167	26001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4848277	4848277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	C	4848277	T	C	4848277	3	2	466	1	0	0	0	0	1	0	0	0	13471	1580	55	3	1053	3	RNF167	17	4848277	Missense_Mutation	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	272826	4848277	76346933	43	27450											
KIF1C	10749	ucsc.edu	37	17	4908297	4908297	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	C	4908297	T	C	4908297	5	2	466	1	0	0	0	0	0	0	1	0	8292	1681	58	3	1209	3	KIF1C	17	4908297	Splice_Site	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	60020	4908297	76286913	44	27451											
SLC16A11	162515	hgsc.bcm.edu	37	17	6946083	6946083	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	6946083	C	T	6946083	5	4	466	1	0	0	0	0	0	0	1	0	14417	695	24	2	1005	2	SLC16A11	17	6946083	Splice_Site	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	2037786	6946083	74249127	45	27452											
MYO19	80179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34871758	34871758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	C	34871758	T	C	34871758	3	2	466	1	0	0	0	0	1	0	0	0	10074	1435	50	3	2562	3	MYO19	17	34871758	Missense_Mutation	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	27925675	34871758	46323452	46	27453											
DGKE	8526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	54926211	54926211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	54926211	A	G	54926211	3	3	466	1	0	0	0	0	1	0	0	0	4470	333	12	3	1061	3	DGKE	17	54926211	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	20054453	54926211	26268999	47	27454											
SLC14A2	8170	broad.mit.edu	37	18	43262338	43262338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	43262338	C	T	43262338	3	4	466	1	0	0	0	0	1	0	0	0	14410	797	28	2	2691	2	SLC14A2	18	43262338	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		43262338	34814910	48	27455											
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	72344119	72344120	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	TA	72344120	-	TA	72344119	7	5	466	1	0	1	1	0	0	0	0	0	17899	796	28	0	1146	0	ZNF407	18	72344119	Frame_Shift_Ins	INS	-	TCGA-BQ-7062-01A-11D-1961-08	29081781	72344119	5733129	49	27456											
STAP2	55620	hgsc.bcm.edu;broad.mit.edu	37	19	4328673	4328673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	4328673	C	G	4328673	3	3	466	1	0	0	0	0	1	0	0	0	15265	666	23	4	792	4	STAP2	19	4328673	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		4328673	54800310	50	27457											
ACER1	125981	broad.mit.edu	37	19	6312191	6312191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	6312191	A	G	6312191	3	3	466	1	0	0	0	0	1	0	0	0	138	188	7	3	491	3	ACER1	19	6312191	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	1983518	6312191	52816792	51	27458											
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	8527467	T	G	8527467	5	3	466	1	0	0	0	0	0	0	1	0	7278	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	2215276	8527467	50601516	52	27459											
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37536822	37536822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	37536822	G	T	37536822	4	4	466	1	0	0	0	0	0	1	0	0	12376	943	33	4	1214	4	PPP1R16B	20	37536822	Nonsense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		37536822	25488698	53	27460	340	2									
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37536828	37536828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	37536828	A	G	37536828	3	3	466	1	0	0	0	0	1	0	0	0	12376	363	13	3	1220	3	PPP1R16B	20	37536828	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	6	37536828	25488692	54	27461	340	2									
ADA	100	broad.mit.edu;bcgsc.ca	37	20	43264929	43264929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	43264929	C	T	43264929	3	4	466	1	0	0	0	0	1	0	0	0	230	521	18	2	1101	2	ADA	20	43264929	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	5728101	43264929	19760591	55	27462											
APOL6	80830	hgsc.bcm.edu	37	22	36055619	36055619	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	36055619	C	G	36055619	2	3	466	1	0	0	0	0	0	0	0	1	810	900	32	4		4	APOL6	22	36055619	Silent	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		36055619	15248947	56	27463											
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38313744	38313744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	T	38313744	C	T	38313744	3	4	466	1	0	0	0	0	1	0	0	0	9580	710	25	2	382	2	MICALL1	22	38313744	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	2258125	38313744	12990822	57	27464											
MAOA	4128	ucsc.edu	37	X	43515619	43515619	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	A	43515619	G	A	43515619	2	1	466	1	0	0	0	0	0	0	0	1	9232	1103	39	1		1	MAOA	23	43515619	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		43515619	111754941	58	27465											
MORC4	79710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	106201626	106201626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	G	106201626	A	G	106201626	3	3	466	1	0	0	0	0	1	0	0	0	9711	101	4	3	1516	3	MORC4	23	106201626	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	62686007	106201626	49068934	59	27466											
STIL	6491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	47717395	47717395	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	47717395	A	T	47717395	3	4	467	1	0	0	0	0	1	0	0	0	15294	101	4	5	590	5	STIL	1	47717395	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10		47717395	201533226	1	27467											
PTGER3	5733	hgsc.bcm.edu;ucsc.edu	37	1	71328117	71328117	+	RNA	SNP	A	A	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	71328117	A	T	71328117	1	4	467	0	1	0	0	0	0	0	0	0	12755	29	1	5		5	PTGER3	1	71328117	RNA	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	23610722	71328117	177922504	2	27468											
ADORA3	140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	112042773	112042773	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	112042773	G	A	112042773	2	1	467	1	0	0	0	0	0	0	0	1	329	1280	45	2		2	ADORA3	1	112042773	Silent	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	40714656	112042773	137207848	3	27469											
FLG	2312	broad.mit.edu;hgsc.bcm.edu	37	1	152277657	152277657	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	152277657	A	G	152277657	2	3	467	1	0	0	0	0	0	0	0	1	5929	59	3	3		3	FLG	1	152277657	Silent	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	40234884	152277657	96972964	4	27470											
LMNA	4000	broad.mit.edu;hgsc.bcm.edu	37	1	156105094	156105094	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	156105094	C	G	156105094	2	3	467	1	0	0	0	0	0	0	0	1	8855	842	30	4		4	LMNA	1	156105094	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	3827437	156105094	93145527	5	27471											
FCRL2	79368	broad.mit.edu;ucsc.edu	37	1	157739752	157739752	+	Missense_Mutation	SNP	C	T	T	rs138011295		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	157739752	T	T	157739752	3	4	467	1	0	0	0	0	1	0	0	0	5802	536	19	1	1063	1	FCRL2	1	157739752	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	1634658	157739752	91510869	6	27472											
TGFB2	7042	broad.mit.edu;hgsc.bcm.edu	37	1	218609363	218609363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	218609363	C	T	218609363	3	4	467	1	0	0	0	0	1	0	0	0	15830	855	30	2	912	2	TGFB2	1	218609363	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	60869611	218609363	30641258	7	27473											
OBSCN	84033	broad.mit.edu;hgsc.bcm.edu	37	1	228528242	228528242	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	228528242	C	T	228528242	2	4	467	1	0	0	0	0	0	0	0	1	10819	668	24	2		2	OBSCN	1	228528242	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	9918879	228528242	20722379	8	27474											
C2orf71	388939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	29295855	29295855	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	29295855	G	A	29295855	4	1	467	1	0	0	0	0	0	1	0	0	2193	1153	40	1	2601	1	C2orf71	2	29295855	Nonsense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10		29295855	213903518	9	27475											
ACTR2	10097	broad.mit.edu;hgsc.bcm.edu	37	2	65488448	65488448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	65488448	C	T	65488448	3	4	467	1	0	0	0	0	1	0	0	0	211	681	24	2	848	2	ACTR2	2	65488448	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	36192593	65488448	177710925	10	27476											
PNO1	56902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	68401898	68401898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	68401898	T	G	68401898	3	3	467	1	0	0	0	0	1	0	0	0	12168	1771	62	5	749	5	PNO1	2	68401898	Missense_Mutation	SNP	T	TCGA-CJ-4634-01A-02D-1386-10	2913450	68401898	174797475	11	27477											
DYSF	8291	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	71896302	71896302	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	71896302	C	A	71896302	2	1	467	1	0	0	0	0	0	0	0	1	4861	813	29	4		4	DYSF	2	71896302	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	3494404	71896302	171303071	12	27478											
NAT8	9027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	73868466	73868467	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	73868467	-	T	73868466	7	5	467	1	0	1	1	0	0	0	0	0	10186	101	4	0	397	0	NAT8	2	73868466	Frame_Shift_Ins	INS	-	TCGA-CJ-4634-01A-02D-1386-10	1972164	73868466	169330907	13	27479											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141806678	141806678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	141806678	C	T	141806678	3	4	467	1	0	0	0	0	1	0	0	0	8962	507	18	2	12457	2	LRP1B	2	141806678	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	67938212	141806678	101392695	14	27480											
NIF3L1	60491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	201761932	201761932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	201761932	C	A	201761932	3	1	467	1	0	0	0	0	1	0	0	0	10423	507	18	4	874	4	NIF3L1	2	201761932	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	59955254	201761932	41437441	15	27481											
USP37	57695	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219423354	219423354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	219423354	C	A	219423354	3	1	467	1	0	0	0	0	1	0	0	0	17080	507	18	4	3008	4	USP37	2	219423354	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	17661422	219423354	23776019	16	27482											
SETD5	55209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9486834	9486834	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	9486834	A	C	9486834	2	2	467	1	0	0	0	0	0	0	0	1	14147	117	5	5		5	SETD5	3	9486834	Silent	SNP	A	TCGA-CJ-4634-01A-02D-1386-10		9486834	188535596	17	27483											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10188296	10188297	+	Frame_Shift_Ins	INS	-	-	TTTT	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	TTTT	10188297	-	TTTT	10188296	7	5	467	1	0	1	1	0	0	0	0	0	17174	449	16	0	445	0	VHL	3	10188296	Frame_Shift_Ins	INS	-	TCGA-CJ-4634-01A-02D-1386-10	701462	10188296	187834134	18	27484											
CELSR3	1951	broad.mit.edu	37	3	48682639	48682639	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	48682639	G	G	48682639	3	3	467	1	0	0	0	0	1	0	0	0	3225	507	18	4	2181	4	CELSR3	3	48682639	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	38494343	48682639	149339791	19	27485											
MON1A	84315	broad.mit.edu	37	3	49948281	49948281	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	49948281	T	T	49948281	3	4	467	1	0	0	0	0	1	0	0	0	9705	188	7	5	1029	5	MON1A	3	49948281	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	1265642	49948281	148074149	20	27486											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52651513	52651513	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	52651513	T	A	52651513	3	1	467	1	0	0	0	0	1	0	0	0	11498	1493	52	5	3385	5	PBRM1	3	52651513	Missense_Mutation	SNP	T	TCGA-CJ-4634-01A-02D-1386-10	2703232	52651513	145370917	21	27487											
ITIH4	3700	broad.mit.edu;hgsc.bcm.edu	37	3	52858241	52858241	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	52858241	A	T	52858241	3	4	467	1	0	0	0	0	1	0	0	0	7913	304	11	5	1720	5	ITIH4	3	52858241	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	206728	52858241	145164189	22	27488											
MAGI1	9223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	65415803	65415805	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	ACA	ACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	-	65415805	ACA	-	65415803	7	5	467	1	0	1	0	1	0	0	0	0	9197	391	14	0	3111	0	MAGI1	3	65415803	In_Frame_Del	DEL	ACA	TCGA-CJ-4634-01A-02D-1386-10	12557562	65415803	132606627	23	27489											
YEATS2	55689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	183490251	183490251	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	183490251	G	C	183490251	2	2	467	1	0	0	0	0	0	0	0	1	17484	1277	45	4		4	YEATS2	3	183490251	Silent	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	118074448	183490251	14532179	24	27490											
TMEM129	92305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	1719303	1719303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	1719303	G	C	1719303	3	2	467	1	0	0	0	0	1	0	0	0	16054	1165	41	4	316	4	TMEM129	4	1719303	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10		1719303	189434973	25	27491											
CCNG2	901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	78085544	78085544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	78085544	C	T	78085544	3	4	467	1	0	0	0	0	1	0	0	0	2926	768	27	1	845	1	CCNG2	4	78085544	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	76366241	78085544	113068732	26	27492											
TRAM1L1	133022	broad.mit.edu;ucsc.edu	37	4	118005673	118005673	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	118005673	A	A	118005673	3	1	467	1	0	0	0	0	1	0	0	0	16464	478	17	4	236	4	TRAM1L1	4	118005673	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	39920129	118005673	73148603	27	27493											
ZNF827	152485	broad.mit.edu	37	4	146824030	146824030	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	146824030	T	T	146824030	2	4	467	1	0	0	0	0	0	0	0	1	18192	581	21	2		2	ZNF827	4	146824030	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	28818357	146824030	44330246	28	27494											
IQGAP2	10788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	75886273	75886273	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	75886273	A	G	75886273	2	3	467	1	0	0	0	0	0	0	0	1	7822	69	3	3		3	IQGAP2	5	75886273	Silent	SNP	A	TCGA-CJ-4634-01A-02D-1386-10		75886273	105028987	29	27495											
CCNH	902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	86695281	86695281	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	86695281	C	A	86695281	4	1	467	1	0	0	0	0	0	1	0	0	2927	835	29	4	181	4	CCNH	5	86695281	Nonsense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	10809008	86695281	94219979	30	27496											
SLC27A6	28965	broad.mit.edu;ucsc.edu	37	5	128321007	128321007	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	128321007	T	T	128321007	2	4	467	1	0	0	0	0	0	0	0	1	14543	489	17	2		2	SLC27A6	5	128321007	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	41625726	128321007	52594253	31	27497											
SLC23A1	9963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	138713670	138713670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	138713670	T	G	138713670	3	3	467	1	0	0	0	0	1	0	0	0	14475	1812	63	5	361	5	SLC23A1	5	138713670	Missense_Mutation	SNP	T	TCGA-CJ-4634-01A-02D-1386-10	10392663	138713670	42201590	32	27498											
PCDHB6	56130	broad.mit.edu;hgsc.bcm.edu	37	5	140531176	140531176	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	140531176	C	T	140531176	2	4	467	1	0	0	0	0	0	0	0	1	11553	842	30	2		2	PCDHB6	5	140531176	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	1817506	140531176	40384084	33	27499											
KIF4B	285643	hgsc.bcm.edu;ucsc.edu	37	5	154395061	154395061	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	-	154395061	A	-	154395061	7	5	467	1	0	1	0	1	0	0	0	0	8311	130	5	0	1644	0	KIF4B	5	154395061	Frame_Shift_Del	DEL	A	TCGA-CJ-4634-01A-02D-1386-10	13863885	154395061	26520199	34	27500											
RIPK1	8737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	3081329	3081329	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	3081329	T	C	3081329	2	2	467	1	0	0	0	0	0	0	0	1	13393	1799	63	3		3	RIPK1	6	3081329	Silent	SNP	T	TCGA-CJ-4634-01A-02D-1386-10		3081329	168033738	35	27501											
ERVFRDE1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	11104942	11104942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	11104942	C	T	11104942	3	4	467	1	0	0	0	0	1	0	0	0	5248	565	20	2	1018	2	ERVFRDE1	6	11104942	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	8023613	11104942	160010125	36	27502											
PGBD1	84547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28269985	28269985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	28269985	C	T	28269985	3	4	467	1	0	0	0	0	1	0	0	0	11787	797	28	2	2376	2	PGBD1	6	28269985	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	17165043	28269985	142845082	37	27503											
SLC22A7	10864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43267765	43267765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	43267765	C	T	43267765	3	4	467	1	0	0	0	0	1	0	0	0	14472	797	28	2	802	2	SLC22A7	6	43267765	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	14997780	43267765	127847302	38	27504											
LRRC1	55227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	53787556	53787556	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	53787556	A	C	53787556	3	2	467	1	0	0	0	0	1	0	0	0	8973	130	5	5	1594	5	LRRC1	6	53787556	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	10519791	53787556	117327511	39	27505											
WTAP	9589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160176079	160176079	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	160176079	C	A	160176079	2	1	467	1	0	0	0	0	0	0	0	1	17421	845	30	4		4	WTAP	6	160176079	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	106388523	160176079	10938988	40	27506											
TRA2A	29896	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23547080	23547080	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	23547080	C	T	23547080	2	4	467	1	0	0	0	0	0	0	0	1	16445	755	27	1		1	TRA2A	7	23547080	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10		23547080	135591583	41	27507											
NPC1L1	29881	broad.mit.edu;ucsc.edu	37	7	44561397	44561397	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	44561397	G	G	44561397	3	3	467	1	0	0	0	0	1	0	0	0	10578	1667	58	5	1248	5	NPC1L1	7	44561397	Missense_Mutation	SNP	T	TCGA-CJ-4634-01A-02D-1386-10	21014317	44561397	114577266	42	27508											
TEX15	56154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	30702516	30702516	+	Missense_Mutation	SNP	C	C	T	rs148542296		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	30702516	C	T	30702516	3	4	467	1	0	0	0	0	1	0	0	0	15791	768	27	1	4367	1	TEX15	8	30702516	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10		30702516	115661506	43	27509											
XKR4	114786	broad.mit.edu	37	8	56015738	56015738	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	56015738	T	T	56015738	2	4	467	1	0	0	0	0	0	0	0	1	17445	697	25	2		2	XKR4	8	56015738	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	25313222	56015738	90348284	44	27510											
PABPC1	26986	hgsc.bcm.edu	37	8	101719004	101719004	+	Missense_Mutation	SNP	G	G	A	rs62513924	bycluster;by1000genomes	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	101719004	G	A	101719004	3	1	467	1	0	0	0	0	1	0	0	0	11370	1145	40	1	449	1	PABPC1	8	101719004	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	45703266	101719004	44645018	45	27511											
KLF9	687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	73028059	73028059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	73028059	C	A	73028059	3	1	467	1	0	0	0	0	1	0	0	0	8360	884	31	4	521	4	KLF9	9	73028059	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10		73028059	68185372	46	27512											
COL15A1	1306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	101817583	101817583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	101817583	G	A	101817583	3	1	467	1	0	0	0	0	1	0	0	0	3674	943	33	2	3255	2	COL15A1	9	101817583	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	28789524	101817583	39395848	47	27513											
NUP214	8021	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	134072982	134072982	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	134072982	C	G	134072982	2	3	467	1	0	0	0	0	0	0	0	1	10769	755	27	4		4	NUP214	9	134072982	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	32255399	134072982	7140449	48	27514											
LCN1	3933	hgsc.bcm.edu	37	9	138414015	138414016	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	-	138414016	CA	-	138414015	7	5	467	1	0	1	0	1	0	0	0	0	8687	813	29	0	219	0	LCN1	9	138414015	Frame_Shift_Del	DEL	CA	TCGA-CJ-4634-01A-02D-1386-10	4341033	138414015	2799416	49	27515											
CAMSAP1	157922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	138713412	138713412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	138713412	C	T	138713412	3	4	467	1	0	0	0	0	1	0	0	0	2613	565	20	2	1741	2	CAMSAP1	9	138713412	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	299397	138713412	2500019	50	27516											
CUBN	8029	broad.mit.edu;ucsc.edu	37	10	17151672	17151672	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	17151672	G	G	17151672	3	3	467	1	0	0	0	0	1	0	0	0	4053	188	7	3	10025	3	CUBN	10	17151672	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10		17151672	118383075	51	27517											
COL13A1	1305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	71692318	71692318	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	71692318	A	T	71692318	2	4	467	1	0	0	0	0	0	0	0	1	3672	291	11	5		5	COL13A1	10	71692318	Silent	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	54540646	71692318	63842429	52	27518	341	2									
COL13A1	1305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	71692319	71692319	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	71692319	G	T	71692319	4	4	467	1	0	0	0	0	0	1	0	0	3672	943	33	4	1772	4	COL13A1	10	71692319	Nonsense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	1	71692319	63842428	53	27519	341	2									
KRTAP5-3	387266	hgsc.bcm.edu	37	11	1629359	1629359	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	-	1629359	C	-	1629359	7	5	467	1	0	1	0	1	0	0	0	0	8569	739	26	0	463	0	KRTAP5-3	11	1629359	Frame_Shift_Del	DEL	C	TCGA-CJ-4634-01A-02D-1386-10		1629359	133377157	54	27520											
CD6	923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60785278	60785278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	60785278	C	A	60785278	3	1	467	1	0	0	0	0	1	0	0	0	3030	478	17	4	1672	4	CD6	11	60785278	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	59155919	60785278	74221238	55	27521											
PZP	5858	hgsc.bcm.edu;ucsc.edu	37	12	9305470	9305471	+	Frame_Shift_Ins	INS	-	-	GTTT	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	GTTT	9305471	-	GTTT	9305470	7	5	467	1	0	1	1	0	0	0	0	0	12882	59	3	0	401	0	PZP	12	9305470	Frame_Shift_Ins	INS	-	TCGA-CJ-4634-01A-02D-1386-10		9305470	124546425	56	27522											
DDX11	1663	broad.mit.edu	37	12	31256928	31256928	+	Silent	SNP	C	G	G	rs4275703	alternate_allele	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	31256928	G	G	31256928	2	3	467	1	0	0	0	0	0	0	0	1	4345	755	27	4		4	DDX11	12	31256928	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	21951458	31256928	102594967	57	27523											
KRT85	3891	broad.mit.edu;hgsc.bcm.edu	37	12	52760791	52760791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	52760791	C	G	52760791	3	3	467	1	0	0	0	0	1	0	0	0	8506	506	18	4	1160	4	KRT85	12	52760791	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	21503863	52760791	81091104	58	27524											
AMHR2	269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53818668	53818668	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	-	53818668	T	-	53818668	7	5	467	1	0	1	0	1	0	0	0	0	573	1654	58	0	418	0	AMHR2	12	53818668	Frame_Shift_Del	DEL	T	TCGA-CJ-4634-01A-02D-1386-10	1057877	53818668	80033227	59	27525											
CMKLR1	1240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	108686307	108686307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	108686307	C	T	108686307	3	4	467	1	0	0	0	0	1	0	0	0	3581	478	17	2	692	2	CMKLR1	12	108686307	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	54867639	108686307	25165588	60	27526											
ACADS	35	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121176678	121176678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	121176678	G	A	121176678	3	1	467	1	0	0	0	0	1	0	0	0	114	1087	38	1	1019	1	ACADS	12	121176678	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	12490371	121176678	12675217	61	27527											
BCL7A	605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	122481799	122481799	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	-	122481799	C	-	122481799	7	5	467	1	0	1	0	1	0	0	0	0	1378	477	17	0	293	0	BCL7A	12	122481799	Frame_Shift_Del	DEL	C	TCGA-CJ-4634-01A-02D-1386-10	1305121	122481799	11370096	62	27528											
DCLK1	9201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	36521538	36521538	+	Silent	SNP	C	C	T	rs146364649	bycluster;by1000genomes	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	36521538	C	T	36521538	2	4	467	1	0	0	0	0	0	0	0	1	4293	639	23	1		1	DCLK1	13	36521538	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10		36521538	78648340	63	27529											
DGKH	160851	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	42740809	42740809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	42740809	G	A	42740809	3	1	467	1	0	0	0	0	1	0	0	0	4472	1014	35	2	1151	2	DGKH	13	42740809	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	6219271	42740809	72429069	64	27530											
MED4	29079	broad.mit.edu;hgsc.bcm.edu	37	13	48669206	48669206	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	48669206	C	G	48669206	2	3	467	1	0	0	0	0	0	0	0	1	9457	523	19	4		4	MED4	13	48669206	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	5928397	48669206	66500672	65	27531											
SIX4	51804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	61190108	61190108	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	61190108	A	T	61190108	3	4	467	1	0	0	0	0	1	0	0	0	14362	130	5	5	1672	5	SIX4	14	61190108	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10		61190108	46159432	66	27532											
HIF1A	3091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	62200986	62200986	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	62200986	T	A	62200986	4	1	467	1	0	0	0	0	0	1	0	0	7110	1702	59	5	1041	5	HIF1A	14	62200986	Nonsense_Mutation	SNP	T	TCGA-CJ-4634-01A-02D-1386-10	1010878	62200986	45148554	67	27533											
DCAF5	8816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	69520975	69520975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	69520975	C	T	69520975	3	4	467	1	0	0	0	0	1	0	0	0	4275	594	21	2	404	2	DCAF5	14	69520975	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	7319989	69520975	37828565	68	27534											
DYNC1H1	1778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	102510612	102510612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	102510612	G	A	102510612	3	1	467	1	0	0	0	0	1	0	0	0	4843	1217	42	2	12968	2	DYNC1H1	14	102510612	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	32989637	102510612	4838928	69	27535											
TDRD9	122402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	104441754	104441754	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	104441754	G	C	104441754	3	2	467	1	0	0	0	0	1	0	0	0	15748	1377	48	4	901	4	TDRD9	14	104441754	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	1931142	104441754	2907786	70	27536											
LPCAT4	254531	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	34651395	34651395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	34651395	G	A	34651395	3	1	467	1	0	0	0	0	1	0	0	0	8920	1294	45	2	70	2	LPCAT4	15	34651395	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10		34651395	67879997	71	27537											
VPS18	57617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41188258	41188258	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	41188258	G	C	41188258	3	2	467	1	0	0	0	0	1	0	0	0	17206	1232	43	4	220	4	VPS18	15	41188258	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	6536863	41188258	61343134	72	27538											
PRKCB	5579	broad.mit.edu;ucsc.edu	37	16	24185869	24185869	+	Silent	SNP	G	C	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	24185869	C	C	24185869	2	2	467	1	0	0	0	0	0	0	0	1	12518	1364	48	4		4	PRKCB	16	24185869	Silent	SNP	G	TCGA-CJ-4634-01A-02D-1386-10		24185869	66168884	73	27539											
TNRC6A	27327	hgsc.bcm.edu	37	16	24805924	24805925	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	CCA	24805925	-	CCA	24805924	7	5	467	1	0	1	1	0	0	0	0	0	16352	623	22	0	3442	0	TNRC6A	16	24805924	In_Frame_Ins	INS	-	TCGA-CJ-4634-01A-02D-1386-10	620055	24805924	65548829	74	27540											
KCTD19	146212	broad.mit.edu;ucsc.edu	37	16	67324887	67324887	+	Silent	SNP	G	C	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	67324887	C	C	67324887	2	2	467	1	0	0	0	0	0	0	0	1	8113	1219	43	4		4	KCTD19	16	67324887	Silent	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	42518963	67324887	23029866	75	27541											
CCDC42	146849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8647475	8647475	+	Silent	SNP	C	C	T	rs149123321		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	8647475	C	T	8647475	2	4	467	1	0	0	0	0	0	0	0	1	2816	639	23	1		1	CCDC42	17	8647475	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10		8647475	72547735	76	27542											
GGNBP2	79893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34943427	34943427	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	34943427	A	C	34943427	3	2	467	1	0	0	0	0	1	0	0	0	6366	347	12	5	1688	5	GGNBP2	17	34943427	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	26295952	34943427	46251783	77	27543											
PLEKHM1	9842	broad.mit.edu;hgsc.bcm.edu	37	17	43552739	43552739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	43552739	T	C	43552739	3	2	467	1	0	0	0	0	1	0	0	0	12087	1609	56	3	2556	3	PLEKHM1	17	43552739	Missense_Mutation	SNP	T	TCGA-CJ-4634-01A-02D-1386-10	8609312	43552739	37642471	78	27544											
ABCA8	10351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	66924117	66924117	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	66924117	A	G	66924117	2	3	467	1	0	0	0	0	0	0	0	1	38	40	2	3		3	ABCA8	17	66924117	Silent	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	23371378	66924117	14271093	79	27545											
L3MBTL4	91133	broad.mit.edu;hgsc.bcm.edu	37	18	6215828	6215828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	6215828	G	C	6215828	3	2	467	1	0	0	0	0	1	0	0	0	8601	1232	43	4	1120	4	L3MBTL4	18	6215828	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10		6215828	71861420	80	27546											
ZNF521	25925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	22806642	22806642	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	22806642	A	C	22806642	3	2	467	1	0	0	0	0	1	0	0	0	17977	98	4	5	2715	5	ZNF521	18	22806642	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	16590814	22806642	55270606	81	27547											
ZNF532	55205	broad.mit.edu	37	18	56601783	56601783	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	56601783	T	T	56601783	3	4	467	1	0	0	0	0	1	0	0	0	17984	893	31	1	2471	1	ZNF532	18	56601783	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	33795141	56601783	21475465	82	27548											
JSRP1	126306	broad.mit.edu;hgsc.bcm.edu	37	19	2252973	2252973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	2252973	C	A	2252973	3	1	467	1	0	0	0	0	1	0	0	0	7973	797	28	4	537	4	JSRP1	19	2252973	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10		2252973	56876010	83	27549											
CELF5	60680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3293438	3293438	+	Silent	SNP	C	C	A	rs142809979	alternate_allele	TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	3293438	C	A	3293438	2	1	467	1	0	0	0	0	0	0	0	1	3221	668	24	4		4	CELF5	19	3293438	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	1040465	3293438	55835545	84	27550											
HKR1	284459	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37853658	37853658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	G	37853658	A	G	37853658	3	3	467	1	0	0	0	0	1	0	0	0	7201	295	11	3	975	3	HKR1	19	37853658	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	34560220	37853658	21275325	85	27551											
MAMSTR	284358	broad.mit.edu	37	19	49216785	49216785	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	49216785	T	T	49216785	2	4	467	1	0	0	0	0	0	0	0	1	9216	581	21	2		2	MAMSTR	19	49216785	Silent	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	11363127	49216785	9912198	86	27552											
FPR3	2359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52327023	52327023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	52327023	C	T	52327023	3	4	467	1	0	0	0	0	1	0	0	0	6047	855	30	2	24	2	FPR3	19	52327023	Missense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	3110238	52327023	6801960	87	27553											
ZNF274	10782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58695360	58695360	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	58695360	T	A	58695360	3	1	467	1	0	0	0	0	1	0	0	0	17821	1667	58	5	30	5	ZNF274	19	58695360	Missense_Mutation	SNP	T	TCGA-CJ-4634-01A-02D-1386-10	6368337	58695360	433623	88	27554											
TMC2	117532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2616597	2616597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	2616597	G	T	2616597	3	4	467	1	0	0	0	0	1	0	0	0	15997	1029	36	4	2402	4	TMC2	20	2616597	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10		2616597	60408923	89	27555											
SIGLEC1	6614	broad.mit.edu	37	20	3679976	3679976	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	3679976	A	A	3679976	2	1	467	1	0	0	0	0	0	0	0	1	14318	1136	40	1		1	SIGLEC1	20	3679976	Silent	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	1063379	3679976	59345544	90	27556											
DSCR6	53820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	38390298	38390298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	A	38390298	G	A	38390298	3	1	467	1	0	0	0	0	1	0	0	0	4775	1059	37	1	378	1	DSCR6	21	38390298	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10		38390298	9739597	91	27557											
DIP2A	23181	broad.mit.edu;ucsc.edu	37	21	47980645	47980645	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	47980645	T	T	47980645	3	4	467	1	0	0	0	0	1	0	0	0	4529	1203	42	4	4223	4	DIP2A	21	47980645	Missense_Mutation	SNP	G	TCGA-CJ-4634-01A-02D-1386-10	9590347	47980645	149250	92	27558											
BCOR	54880	hgsc.bcm.edu;ucsc.edu	37	X	39921479	39921479	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	39921479	G	C	39921479	2	2	467	1	0	0	0	0	0	0	0	1	1386	1190	42	4		4	BCOR	23	39921479	Silent	SNP	G	TCGA-CJ-4634-01A-02D-1386-10		39921479	115349081	93	27559											
NRK	203447	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	105132300	105132300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	C	105132300	A	C	105132300	3	2	467	1	0	0	0	0	1	0	0	0	10662	333	12	5	284	5	NRK	23	105132300	Missense_Mutation	SNP	A	TCGA-CJ-4634-01A-02D-1386-10	65210821	105132300	50138260	94	27560											
FMR1NB	158521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	147088242	147088242	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4634-01A-02D-1386-10	TCGA-CJ-4634-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59f18fac-c6f8-4cbf-9259-8c22d6ba0c58	2edd8e13-514b-40ec-ace4-86e733c0f94e	T	147088242	C	T	147088242	4	4	467	1	0	0	0	0	0	1	0	0	5968	827	29	2	428	2	FMR1NB	23	147088242	Nonsense_Mutation	SNP	C	TCGA-CJ-4634-01A-02D-1386-10	41955942	147088242	8182318	95	27561											
PPIH	10465	hgsc.bcm.edu;ucsc.edu	37	1	43124123	43124123	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	43124123	G	A	43124123	2	1	468	1	0	0	0	0	0	0	0	1	12335	1103	39	1		1	PPIH	1	43124123	Silent	SNP	G	TCGA-CJ-4635-01A-02D-1373-10		43124123	206126498	1	27562											
RAB3B	5865	hgsc.bcm.edu;ucsc.edu	37	1	52385647	52385647	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	52385647	C	T	52385647	2	4	468	1	0	0	0	0	0	0	0	1	12945	755	27	1		1	RAB3B	1	52385647	Silent	SNP	C	TCGA-CJ-4635-01A-02D-1373-10	9261524	52385647	196864974	2	27563											
PDE4DIP	9659	hgsc.bcm.edu	37	1	144906421	144906421	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	144906421	C	G	144906421	3	3	468	1	0	0	0	0	1	0	0	0	11650	695	24	4	4722	4	PDE4DIP	1	144906421	Missense_Mutation	SNP	C	TCGA-CJ-4635-01A-02D-1373-10	92520774	144906421	104344200	3	27564											
TARS2	80222	hgsc.bcm.edu;ucsc.edu	37	1	150460370	150460370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	150460370	C	G	150460370	3	3	468	1	0	0	0	0	1	0	0	0	15572	759	27	4	109	4	TARS2	1	150460370	Missense_Mutation	SNP	C	TCGA-CJ-4635-01A-02D-1373-10	5553949	150460370	98790251	4	27565											
ANXA4	307	hgsc.bcm.edu;ucsc.edu	37	2	70008703	70008703	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	70008703	C	A	70008703	2	1	468	1	0	0	0	0	0	0	0	1	720	581	21	4		4	ANXA4	2	70008703	Silent	SNP	C	TCGA-CJ-4635-01A-02D-1373-10		70008703	173190670	5	27566											
SLC9A4	389015	hgsc.bcm.edu;ucsc.edu	37	2	103148953	103148953	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	103148953	G	T	103148953	4	4	468	1	0	0	0	0	0	1	0	0	14729	943	33	4	2249	4	SLC9A4	2	103148953	Nonsense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	33140250	103148953	140050420	6	27567											
DNAJC10	54431	hgsc.bcm.edu	37	2	183622508	183622508	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	183622508	G	A	183622508	2	1	468	1	0	0	0	0	0	0	0	1	4631	933	33	2		2	DNAJC10	2	183622508	Silent	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	80473555	183622508	59576865	7	27568											
ALAS1	211	hgsc.bcm.edu	37	3	52239907	52239907	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	52239907	G	C	52239907	3	2	468	1	0	0	0	0	1	0	0	0	484	1349	47	4	871	4	ALAS1	3	52239907	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10		52239907	145782523	8	27569											
PBRM1	55193	hgsc.bcm.edu	37	3	52713700	52713700	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	52713700	A	T	52713700	3	4	468	1	0	0	0	0	1	0	0	0	11498	304	11	5	4992	5	PBRM1	3	52713700	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	473793	52713700	145308730	9	27570											
ZNF732	654254	hgsc.bcm.edu;ucsc.edu	37	4	265943	265943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	265943	A	G	265943	3	3	468	1	0	0	0	0	1	0	0	0	18135	333	12	3	1058	3	ZNF732	4	265943	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10		265943	190888333	10	27571											
PDS5A	23244	hgsc.bcm.edu;ucsc.edu	37	4	39929780	39929780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	39929780	A	G	39929780	3	3	468	1	0	0	0	0	1	0	0	0	11698	391	14	3	4027	3	PDS5A	4	39929780	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	39663837	39929780	151224496	11	27572											
HERC3	8916	hgsc.bcm.edu;ucsc.edu	37	4	89583638	89583638	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	89583638	A	C	89583638	3	2	468	1	0	0	0	0	1	0	0	0	7066	359	13	5	1237	5	HERC3	4	89583638	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	49653858	89583638	101570638	12	27573											
ANK2	287	hgsc.bcm.edu	37	4	114170963	114170963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	114170963	A	G	114170963	3	3	468	1	0	0	0	0	1	0	0	0	621	275	10	3	998	3	ANK2	4	114170963	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	24587325	114170963	76983313	13	27574											
ANKRD55	79722	hgsc.bcm.edu	37	5	55455707	55455707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	55455707	G	T	55455707	3	4	468	1	0	0	0	0	1	0	0	0	681	991	35	4	1436	4	ANKRD55	5	55455707	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10		55455707	125459553	14	27575											
AP3B1	8546	hgsc.bcm.edu	37	5	77406143	77406143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	77406143	G	A	77406143	3	1	468	1	0	0	0	0	1	0	0	0	744	942	33	2	1031	2	AP3B1	5	77406143	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	21950436	77406143	103509117	15	27576											
IRF1	3659	hgsc.bcm.edu	37	5	131821389	131821389	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	131821389	C	T	131821389	2	4	468	1	0	0	0	0	0	0	0	1	7834	680	24	2		2	IRF1	5	131821389	Silent	SNP	C	TCGA-CJ-4635-01A-02D-1373-10	54415246	131821389	49093871	16	27577											
MYLK4	340156	hgsc.bcm.edu;ucsc.edu	37	6	2678597	2678597	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	2678597	A	G	2678597	2	3	468	1	0	0	0	0	0	0	0	1	10066	30	2	3		3	MYLK4	6	2678597	Silent	SNP	A	TCGA-CJ-4635-01A-02D-1373-10		2678597	168436470	17	27578											
MDN1	23195	hgsc.bcm.edu;ucsc.edu	37	6	90362818	90362818	+	Missense_Mutation	SNP	G	G	A	rs149487165	bycluster;by1000genomes;alternate_allele	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	90362818	G	A	90362818	3	1	468	1	0	0	0	0	1	0	0	0	9422	1232	43	2	1108	2	MDN1	6	90362818	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	87684221	90362818	80752249	18	27579											
HBS1L	10767	hgsc.bcm.edu	37	6	135300385	135300385	+	Missense_Mutation	SNP	G	G	C	rs145782441	alternate_allele	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	135300385	G	C	135300385	3	2	468	1	0	0	0	0	1	0	0	0	6994	1000	35	4	455	4	HBS1L	6	135300385	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	44937567	135300385	35814682	19	27580											
RGS17	26575	hgsc.bcm.edu;ucsc.edu	37	6	153345485	153345485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	153345485	T	C	153345485	3	2	468	1	0	0	0	0	1	0	0	0	13312	1667	58	3	284	3	RGS17	6	153345485	Missense_Mutation	SNP	T	TCGA-CJ-4635-01A-02D-1373-10	18045100	153345485	17769582	20	27581											
KIAA1324L	222223	hgsc.bcm.edu;ucsc.edu	37	7	86548618	86548618	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	86548618	C	G	86548618	3	3	468	1	0	0	0	0	1	0	0	0	8231	507	18	4	1729	4	KIAA1324L	7	86548618	Missense_Mutation	SNP	C	TCGA-CJ-4635-01A-02D-1373-10		86548618	72590045	21	27582											
CNTLN	54875	hgsc.bcm.edu;ucsc.edu	37	9	17394889	17394889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	17394889	A	G	17394889	3	3	468	1	0	0	0	0	1	0	0	0	3641	247	9	3	2525	3	CNTLN	9	17394889	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10		17394889	123818542	22	27583											
COL15A1	1306	hgsc.bcm.edu;ucsc.edu	37	9	101759361	101759361	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	101759361	A	T	101759361	3	4	468	1	0	0	0	0	1	0	0	0	3674	130	5	5	972	5	COL15A1	9	101759361	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	84364472	101759361	39454070	23	27584											
ARID5B	84159	hgsc.bcm.edu;ucsc.edu	37	10	63845486	63845486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	63845486	A	C	63845486	3	2	468	1	0	0	0	0	1	0	0	0	922	449	16	5	1259	5	ARID5B	10	63845486	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10		63845486	71689261	24	27585											
MYPN	84665	hgsc.bcm.edu;ucsc.edu	37	10	69925513	69925513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	69925513	T	C	69925513	3	2	468	1	0	0	0	0	1	0	0	0	10105	1783	62	3	1568	3	MYPN	10	69925513	Missense_Mutation	SNP	T	TCGA-CJ-4635-01A-02D-1373-10	6080027	69925513	65609234	25	27586											
ARHGAP19	84986	hgsc.bcm.edu;ucsc.edu	37	10	99019161	99019161	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	99019161	T	G	99019161	3	3	468	1	0	0	0	0	1	0	0	0	869	1841	64	5	678	5	ARHGAP19	10	99019161	Missense_Mutation	SNP	T	TCGA-CJ-4635-01A-02D-1373-10	29093648	99019161	36515586	26	27587											
FAM111B	374393	hgsc.bcm.edu;ucsc.edu	37	11	58877131	58877131	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	58877131	A	C	58877131	2	2	468	1	0	0	0	0	0	0	0	1	5404	204	8	5		5	FAM111B	11	58877131	Silent	SNP	A	TCGA-CJ-4635-01A-02D-1373-10		58877131	76129385	27	27588											
BIRC2	329	hgsc.bcm.edu;ucsc.edu	37	11	102248743	102248743	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	102248743	G	A	102248743	2	1	468	1	0	0	0	0	0	0	0	1	1435	1281	45	2		2	BIRC2	11	102248743	Silent	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	43371612	102248743	32757773	28	27589											
GLI1	2735	hgsc.bcm.edu	37	12	57865037	57865037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	57865037	T	G	57865037	3	3	468	1	0	0	0	0	1	0	0	0	6444	1693	59	5	2556	5	GLI1	12	57865037	Missense_Mutation	SNP	T	TCGA-CJ-4635-01A-02D-1373-10		57865037	75986858	29	27590											
GLI1	2735	hgsc.bcm.edu	37	12	57865608	57865608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	57865608	C	T	57865608	3	4	468	1	0	0	0	0	1	0	0	0	6444	855	30	2	3127	2	GLI1	12	57865608	Missense_Mutation	SNP	C	TCGA-CJ-4635-01A-02D-1373-10	571	57865608	75986287	30	27591											
PTPRR	5801	hgsc.bcm.edu	37	12	71092114	71092114	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	71092114	A	C	71092114	3	2	468	1	0	0	0	0	1	0	0	0	12823	72	3	5	791	5	PTPRR	12	71092114	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	13226506	71092114	62759781	31	27592											
NAA25	80018	hgsc.bcm.edu	37	12	112516503	112516503	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	112516503	G	A	112516503	2	1	468	1	0	0	0	0	0	0	0	1	10128	933	33	2		2	NAA25	12	112516503	Silent	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	41424389	112516503	21335392	32	27593											
FBXO21	23014	hgsc.bcm.edu;ucsc.edu	37	12	117627030	117627030	+	Splice_Site	SNP	A	A	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	117627030	A	G	117627030	5	3	468	1	0	0	0	0	0	0	1	0	5740	405	14	3	1553	3	FBXO21	12	117627030	Splice_Site	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	5110527	117627030	16224865	33	27594											
FRY	10129	hgsc.bcm.edu;ucsc.edu	37	13	32798431	32798431	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	32798431	C	T	32798431	4	4	468	1	0	0	0	0	0	1	0	0	6070	711	25	2	4971	2	FRY	13	32798431	Nonsense_Mutation	SNP	C	TCGA-CJ-4635-01A-02D-1373-10		32798431	82371447	34	27595											
DCT	1638	hgsc.bcm.edu;ucsc.edu	37	13	95117927	95117927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	95117927	G	A	95117927	3	1	468	1	0	0	0	0	1	0	0	0	4306	1057	37	1	863	1	DCT	13	95117927	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	62319496	95117927	20051951	35	27596											
ACTR10	55860	hgsc.bcm.edu;ucsc.edu	37	14	58701185	58701185	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	58701185	C	T	58701185	2	4	468	1	0	0	0	0	0	0	0	1	208	813	29	2		2	ACTR10	14	58701185	Silent	SNP	C	TCGA-CJ-4635-01A-02D-1373-10		58701185	48648355	36	27597											
DUOX2	50506	hgsc.bcm.edu	37	15	45387206	45387206	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	45387206	G	A	45387206	2	1	468	1	0	0	0	0	0	0	0	1	4803	1252	44	2		2	DUOX2	15	45387206	Silent	SNP	G	TCGA-CJ-4635-01A-02D-1373-10		45387206	57144186	37	27598											
ACAN	176	hgsc.bcm.edu	37	15	89398671	89398671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	89398671	G	A	89398671	3	1	468	1	0	0	0	0	1	0	0	0	117	1232	43	2	2897	2	ACAN	15	89398671	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	44011465	89398671	13132721	38	27599											
SRRM2	23524	hgsc.bcm.edu	37	16	2816400	2816400	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	2816400	G	A	2816400	2	1	468	1	0	0	0	0	0	0	0	1	15181	1252	44	2		2	SRRM2	16	2816400	Silent	SNP	G	TCGA-CJ-4635-01A-02D-1373-10		2816400	87538353	39	27600											
MT1X	4501	hgsc.bcm.edu	37	16	56717913	56717913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	56717913	G	T	56717913	3	4	468	1	0	0	0	0	1	0	0	0	9911	991	35	4	148	4	MT1X	16	56717913	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	53901513	56717913	33636840	40	27601											
ABCA5	23461	hgsc.bcm.edu	37	17	67266771	67266771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	67266771	T	C	67266771	3	2	468	1	0	0	0	0	1	0	0	0	35	1551	54	3	1987	3	ABCA5	17	67266771	Missense_Mutation	SNP	T	TCGA-CJ-4635-01A-02D-1373-10		67266771	13928439	41	27602											
KCNJ16	3773	hgsc.bcm.edu;ucsc.edu	37	17	68128601	68128601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	68128601	T	C	68128601	3	2	468	1	0	0	0	0	1	0	0	0	8057	1551	54	3	375	3	KCNJ16	17	68128601	Missense_Mutation	SNP	T	TCGA-CJ-4635-01A-02D-1373-10	861830	68128601	13066609	42	27603											
UNK	85451	hgsc.bcm.edu	37	17	73818637	73818637	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	73818637	A	T	73818637	2	4	468	1	0	0	0	0	0	0	0	1	17012	436	16	5		5	UNK	17	73818637	Silent	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	5690036	73818637	7376573	43	27604											
FN3KRP	79672	hgsc.bcm.edu;ucsc.edu	37	17	80680693	80680693	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	80680693	G	A	80680693	2	1	468	1	0	0	0	0	0	0	0	1	5971	1190	42	2		2	FN3KRP	17	80680693	Silent	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	6862056	80680693	514517	44	27605											
KIAA1012	0	hgsc.bcm.edu	37	18	29437670	29437670	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	29437670	G	A	29437670	2	1	468	1	0	0	0	0	0	0	0	1	8211	1306	46	2		2	KIAA1012	18	29437670	Silent	SNP	G	TCGA-CJ-4635-01A-02D-1373-10		29437670	48639578	45	27606											
THEG	51298	hgsc.bcm.edu	37	19	362217	362217	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	362217	G	C	362217	3	2	468	1	0	0	0	0	1	0	0	0	15869	1261	44	4	20	4	THEG	19	362217	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10		362217	58766766	46	27607											
C19orf53	28974	hgsc.bcm.edu	37	19	13885310	13885310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	13885310	A	G	13885310	3	3	468	1	0	0	0	0	1	0	0	0	1937	131	5	3	21	3	C19orf53	19	13885310	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	13523093	13885310	45243673	47	27608											
ARHGAP33	115703	hgsc.bcm.edu	37	19	36273301	36273301	+	Missense_Mutation	SNP	C	C	A	rs150993015	alternate_allele	TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	36273301	C	A	36273301	3	1	468	1	0	0	0	0	1	0	0	0	882	652	23	4	1162	4	ARHGAP33	19	36273301	Missense_Mutation	SNP	C	TCGA-CJ-4635-01A-02D-1373-10	22387991	36273301	22855682	48	27609											
DHX34	9704	hgsc.bcm.edu	37	19	47861187	47861187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	47861187	C	T	47861187	3	4	468	1	0	0	0	0	1	0	0	0	4509	681	24	2	1092	2	DHX34	19	47861187	Missense_Mutation	SNP	C	TCGA-CJ-4635-01A-02D-1373-10	11587886	47861187	11267796	49	27610											
OVOL2	58495	hgsc.bcm.edu;ucsc.edu	37	20	18005499	18005499	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	T	18005499	C	T	18005499	2	4	468	1	0	0	0	0	0	0	0	1	11334	564	20	2		2	OVOL2	20	18005499	Silent	SNP	C	TCGA-CJ-4635-01A-02D-1373-10		18005499	45020021	50	27611											
C20orf152	0	hgsc.bcm.edu;ucsc.edu	37	20	34611538	34611538	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	34611538	C	A	34611538	2	1	468	1	0	0	0	0	0	0	0	1	2094	668	24	4		4	C20orf152	20	34611538	Silent	SNP	C	TCGA-CJ-4635-01A-02D-1373-10	16606039	34611538	28413982	51	27612											
PCIF1	63935	hgsc.bcm.edu	37	20	44571762	44571762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	44571762	A	G	44571762	3	3	468	1	0	0	0	0	1	0	0	0	11587	130	5	3	722	3	PCIF1	20	44571762	Missense_Mutation	SNP	A	TCGA-CJ-4635-01A-02D-1373-10	9960224	44571762	18453758	52	27613											
BMP7	655	hgsc.bcm.edu	37	20	55758892	55758892	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	55758892	T	G	55758892	3	3	468	1	0	0	0	0	1	0	0	0	1465	1821	63	5	467	5	BMP7	20	55758892	Missense_Mutation	SNP	T	TCGA-CJ-4635-01A-02D-1373-10	11187130	55758892	7266628	53	27614											
DIDO1	11083	hgsc.bcm.edu;ucsc.edu	37	20	61537212	61537212	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	61537212	G	A	61537212	2	1	468	1	0	0	0	0	0	0	0	1	4524	991	35	2		2	DIDO1	20	61537212	Silent	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	5778320	61537212	1488308	54	27615											
BRWD1	54014	hgsc.bcm.edu	37	21	40649200	40649200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	G	40649200	T	G	40649200	3	3	468	1	0	0	0	0	1	0	0	0	1527	1493	52	5	6248	5	BRWD1	21	40649200	Missense_Mutation	SNP	T	TCGA-CJ-4635-01A-02D-1373-10		40649200	7480695	55	27616											
PRODH	5625	hgsc.bcm.edu	37	22	18904467	18904467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	18904467	T	C	18904467	3	2	468	1	0	0	0	0	1	0	0	0	12558	1812	63	3	352	3	PRODH	22	18904467	Missense_Mutation	SNP	T	TCGA-CJ-4635-01A-02D-1373-10		18904467	32400099	56	27617											
SGSM1	129049	hgsc.bcm.edu	37	22	25282669	25282669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	C	25282669	G	C	25282669	3	2	468	1	0	0	0	0	1	0	0	0	14235	1116	39	4	1975	4	SGSM1	22	25282669	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	6378202	25282669	26021897	57	27618											
MAGEB2	4113	hgsc.bcm.edu	37	X	30236765	30236765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	30236765	G	A	30236765	3	1	468	1	0	0	0	0	1	0	0	0	9183	1116	39	1	70	1	MAGEB2	23	30236765	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10		30236765	125033795	58	27619											
DRP2	1821	hgsc.bcm.edu	37	X	100509876	100509876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4635-01A-02D-1373-10	TCGA-CJ-4635-11B-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2504b5cf-c2ff-4d30-8b3f-27e43f862e17	d095c7c8-99bf-4b02-ba05-ace6938b7fa6	A	100509876	G	A	100509876	3	1	468	1	0	0	0	0	1	0	0	0	4766	1087	38	1	2209	1	DRP2	23	100509876	Missense_Mutation	SNP	G	TCGA-CJ-4635-01A-02D-1373-10	70273111	100509876	54760684	59	27620											
CNKSR1	10256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26513674	26513674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	26513674	G	A	26513674	3	1	469	1	0	0	0	0	1	0	0	0	3608	1232	43	2	1382	2	CNKSR1	1	26513674	Missense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10		26513674	222736947	1	27621											
SLC44A5	204962	broad.mit.edu;ucsc.edu	37	1	75681492	75681492	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	G	75681492	G	G	75681492	3	3	469	1	0	0	0	0	1	0	0	0	14652	72	3	3	619	3	SLC44A5	1	75681492	Missense_Mutation	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	49167818	75681492	173569129	2	27622											
DENND2D	79961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111741341	111741341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	111741341	C	A	111741341	3	1	469	1	0	0	0	0	1	0	0	0	4433	796	28	4	1188	4	DENND2D	1	111741341	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	36059849	111741341	137509280	3	27623											
WDR77	79084	broad.mit.edu;hgsc.bcm.edu	37	1	111989749	111989749	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	111989749	A	C	111989749	3	2	469	1	0	0	0	0	1	0	0	0	17339	72	3	5	595	5	WDR77	1	111989749	Missense_Mutation	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	248408	111989749	137260872	4	27624											
KIFAP3	22920	hgsc.bcm.edu;ucsc.edu	37	1	170003574	170003574	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	-	170003574	A	-	170003574	7	5	469	1	0	1	0	1	0	0	0	0	8318	126	5	0	1753	0	KIFAP3	1	170003574	Frame_Shift_Del	DEL	A	TCGA-CJ-4636-01A-02D-1386-10	58013825	170003574	79247047	5	27625											
CFHR2	3080	hgsc.bcm.edu;ucsc.edu	37	1	196918739	196918739	+	Silent	SNP	G	G	A	rs61746417	bycluster;byfrequency;by1000genomes	TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	196918739	G	A	196918739	2	1	469	1	0	0	0	0	0	0	0	1	3287	1132	40	1		1	CFHR2	1	196918739	Silent	SNP	G	TCGA-CJ-4636-01A-02D-1386-10	26915165	196918739	52331882	6	27626											
IL19	29949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	207014376	207014376	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	207014376	C	T	207014376	4	4	469	1	0	0	0	0	0	1	0	0	7656	711	25	2	523	2	IL19	1	207014376	Nonsense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	10095637	207014376	42236245	7	27627											
CAPN9	10753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	230910375	230910375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	230910375	C	A	230910375	3	1	469	1	0	0	0	0	1	0	0	0	2634	912	32	4	981	4	CAPN9	1	230910375	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	23895999	230910375	18340246	8	27628											
DTNB	1838	broad.mit.edu;ucsc.edu	37	2	25754451	25754451	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	25754451	A	A	25754451	4	1	469	1	0	0	0	0	0	1	0	0	4791	1792	62	5	1039	5	DTNB	2	25754451	Nonsense_Mutation	SNP	T	TCGA-CJ-4636-01A-02D-1386-10		25754451	217444922	9	27629											
GPN1	11321	hgsc.bcm.edu;ucsc.edu	37	2	27861049	27861049	+	RNA	SNP	T	T	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	27861049	T	A	27861049	1	1	469	0	1	0	0	0	0	0	0	0	6624	1537	53	5		5	GPN1	2	27861049	RNA	SNP	T	TCGA-CJ-4636-01A-02D-1386-10	2106598	27861049	215338324	10	27630											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191513	10191513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	10191513	T	C	10191513	3	2	469	1	0	0	0	0	1	0	0	0	17174	1522	53	3	516	3	VHL	3	10191513	Missense_Mutation	SNP	T	TCGA-CJ-4636-01A-02D-1386-10		10191513	187830917	11	27631											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52443568	52443568	+	Splice_Site	SNP	A	A	G	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	G	52443568	A	G	52443568	5	3	469	1	0	0	0	0	0	0	1	0	1311	173	6	3	2125	3	BAP1	3	52443568	Splice_Site	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	42252055	52443568	145578862	12	27632											
MUC4	4585	hgsc.bcm.edu	37	3	195506760	195506760	+	Silent	SNP	T	T	A	rs62282473	by1000genomes	TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	195506760	T	A	195506760	2	1	469	1	0	0	0	0	0	0	0	1	9985	1451	51	5		5	MUC4	3	195506760	Silent	SNP	T	TCGA-CJ-4636-01A-02D-1386-10	143063192	195506760	2515670	13	27633											
CWH43	80157	broad.mit.edu;hgsc.bcm.edu	37	4	49019269	49019269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	49019269	T	C	49019269	3	2	469	1	0	0	0	0	1	0	0	0	4075	1580	55	3	1224	3	CWH43	4	49019269	Missense_Mutation	SNP	T	TCGA-CJ-4636-01A-02D-1386-10		49019269	142135007	14	27634											
NPFFR2	10886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	73013282	73013282	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	73013282	A	T	73013282	3	4	469	1	0	0	0	0	1	0	0	0	10585	101	4	5	1342	5	NPFFR2	4	73013282	Missense_Mutation	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	23994013	73013282	118140994	15	27635											
MAML3	55534	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	140640547	140640547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	140640547	T	C	140640547	3	2	469	1	0	0	0	0	1	0	0	0	9214	1667	58	3	73	3	MAML3	4	140640547	Missense_Mutation	SNP	T	TCGA-CJ-4636-01A-02D-1386-10	67627265	140640547	50513729	16	27636											
ADAMTS6	11174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	64510620	64510620	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	64510620	C	T	64510620	5	4	469	1	0	0	0	0	0	0	1	0	270	521	18	2	801	2	ADAMTS6	5	64510620	Splice_Site	SNP	C	TCGA-CJ-4636-01A-02D-1386-10		64510620	116404640	17	27637											
MAST4	375449	broad.mit.edu;ucsc.edu	37	5	66462005	66462005	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	66462005	T	T	66462005	3	4	469	1	0	0	0	0	1	0	0	0	9334	159	6	5	7242	5	MAST4	5	66462005	Missense_Mutation	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	1951385	66462005	114453255	18	27638											
BDP1	55814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	70808132	70808132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	G	70808132	A	G	70808132	3	3	469	1	0	0	0	0	1	0	0	0	1395	14	1	3	4194	3	BDP1	5	70808132	Missense_Mutation	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	4346127	70808132	110107128	19	27639											
GRM6	2916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	178416292	178416292	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	178416292	G	C	178416292	4	2	469	1	0	0	0	0	0	1	0	0	6808	1294	45	4	1530	4	GRM6	5	178416292	Nonsense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10	107608160	178416292	2498968	20	27640											
ITPR3	3710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33657132	33657132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	33657132	G	A	33657132	3	1	469	1	0	0	0	0	1	0	0	0	7929	1087	38	1	7010	1	ITPR3	6	33657132	Missense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10		33657132	137457935	21	27641											
COL21A1	81578	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56035909	56035909	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	56035909	G	A	56035909	4	1	469	1	0	0	0	0	0	1	0	0	3682	1153	40	1	2323	1	COL21A1	6	56035909	Nonsense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10	22378777	56035909	115079158	22	27642											
PNLDC1	154197	broad.mit.edu	37	6	160240368	160240368	+	Missense_Mutation	SNP	G	A	A	rs138386704		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	160240368	A	A	160240368	3	1	469	1	0	0	0	0	1	0	0	0	12155	1145	40	1	1549	1	PNLDC1	6	160240368	Missense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10	104204459	160240368	10874699	23	27643											
PAPOLB	56903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	4899654	4899654	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	4899654	G	A	4899654	2	1	469	1	0	0	0	0	0	0	0	1	11437	1136	40	1		1	PAPOLB	7	4899654	Silent	SNP	G	TCGA-CJ-4636-01A-02D-1386-10		4899654	154239009	24	27644											
FBXL13	222235	broad.mit.edu;hgsc.bcm.edu	37	7	102665656	102665656	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	G	102665656	A	G	102665656	2	3	469	1	0	0	0	0	0	0	0	1	5716	98	4	3		3	FBXL13	7	102665656	Silent	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	97766002	102665656	56473007	25	27645											
ZFPM2	23414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	106815071	106815071	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	106815071	A	C	106815071	3	2	469	1	0	0	0	0	1	0	0	0	17670	246	9	5	2791	5	ZFPM2	8	106815071	Missense_Mutation	SNP	A	TCGA-CJ-4636-01A-02D-1386-10		106815071	39548951	26	27646											
ST3GAL1	6482	broad.mit.edu;ucsc.edu	37	8	134478309	134478309	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	134478309	C	C	134478309	3	2	469	1	0	0	0	0	1	0	0	0	15226	1812	63	3	711	3	ST3GAL1	8	134478309	Missense_Mutation	SNP	T	TCGA-CJ-4636-01A-02D-1386-10	27663238	134478309	11885713	27	27647											
EPPK1	83481	broad.mit.edu	37	8	144942850	144942850	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	144942850	A	A	144942850	2	1	469	1	0	0	0	0	0	0	0	1	5192	1161	41	2		2	EPPK1	8	144942850	Silent	SNP	G	TCGA-CJ-4636-01A-02D-1386-10	10464541	144942850	1421172	28	27648											
OGN	4969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95165563	95165563	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	95165563	A	C	95165563	3	2	469	1	0	0	0	0	1	0	0	0	10853	101	4	5	793	5	OGN	9	95165563	Missense_Mutation	SNP	A	TCGA-CJ-4636-01A-02D-1386-10		95165563	46047868	29	27649											
MBL2	4153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	54527937	54527937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	54527937	C	T	54527937	3	4	469	1	0	0	0	0	1	0	0	0	9357	710	25	2	43	2	MBL2	10	54527937	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10		54527937	81006810	30	27650											
OR8D4	338662	broad.mit.edu;ucsc.edu	37	11	123777914	123777914	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	123777914	T	T	123777914	3	4	469	1	0	0	0	0	1	0	0	0	11240	449	16	5	778	5	OR8D4	11	123777914	Missense_Mutation	SNP	A	TCGA-CJ-4636-01A-02D-1386-10		123777914	11228602	31	27651											
C12orf39	80763	broad.mit.edu;ucsc.edu	37	12	21679901	21679901	+	Splice_Site	SNP	G	T	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	21679901	T	T	21679901	5	4	469	1	0	0	0	0	0	0	1	0	1686	1275	44	4	94	4	C12orf39	12	21679901	Splice_Site	SNP	G	TCGA-CJ-4636-01A-02D-1386-10		21679901	112171994	32	27652											
PDE1B	5153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54971106	54971106	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	54971106	G	A	54971106	2	1	469	1	0	0	0	0	0	0	0	1	11641	1335	47	2		2	PDE1B	12	54971106	Silent	SNP	G	TCGA-CJ-4636-01A-02D-1386-10	33291205	54971106	78880789	33	27653											
LRRC10	376132	broad.mit.edu;hgsc.bcm.edu	37	12	70003903	70003903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	70003903	C	T	70003903	3	4	469	1	0	0	0	0	1	0	0	0	8974	913	32	2	121	2	LRRC10	12	70003903	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	15032797	70003903	63847992	34	27654											
SART3	9733	hgsc.bcm.edu;ucsc.edu	37	12	108941708	108941708	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	-	108941708	C	-	108941708	7	5	469	1	0	1	0	1	0	0	0	0	13860	922	32	0	2460	0	SART3	12	108941708	Frame_Shift_Del	DEL	C	TCGA-CJ-4636-01A-02D-1386-10	38937805	108941708	24910187	35	27655											
CCDC62	84660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123307924	123307924	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	123307924	C	A	123307924	2	1	469	1	0	0	0	0	0	0	0	1	2835	842	30	4		4	CCDC62	12	123307924	Silent	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	14366216	123307924	10543971	36	27656											
PARP4	143	hgsc.bcm.edu;ucsc.edu	37	13	25034117	25034117	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	-	25034117	T	-	25034117	7	5	469	1	0	1	0	1	0	0	0	0	11470	1725	60	0	2951	0	PARP4	13	25034117	Frame_Shift_Del	DEL	T	TCGA-CJ-4636-01A-02D-1386-10		25034117	90135761	37	27657											
HNRNPC	3183	broad.mit.edu;hgsc.bcm.edu	37	14	21699200	21699200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	21699200	G	T	21699200	3	4	469	1	0	0	0	0	1	0	0	0	7269	1252	44	4	671	4	HNRNPC	14	21699200	Missense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10		21699200	85650340	38	27658											
METTL3	56339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21966492	21966492	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	21966492	C	T	21966492	2	4	469	1	0	0	0	0	0	0	0	1	9508	581	21	2		2	METTL3	14	21966492	Silent	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	267292	21966492	85383048	39	27659			1	54		4	4	1156	C		1.770271e-09
METTL3	56339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21967449	21967449	+	Splice_Site	SNP	C	C	G	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	G	21967449	C	G	21967449	5	3	469	1	0	0	0	0	0	0	1	0	9508	521	18	4	235	4	METTL3	14	21967449	Splice_Site	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	957	21967449	85382091	40	27660			1	54		4	4	1156	C		1.770271e-09
METTL3	56339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21967512	21967512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	21967512	C	T	21967512	3	4	469	1	0	0	0	0	1	0	0	0	9508	594	21	2	298	2	METTL3	14	21967512	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	63	21967512	85382028	41	27661			1	54		4	4	1156	C		1.770271e-09
METTL3	56339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21967647	21967647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	21967647	C	T	21967647	3	4	469	1	0	0	0	0	1	0	0	0	9508	864	30	2	317	2	METTL3	14	21967647	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	135	21967647	85381893	42	27662			1	54		4	4	1156	C		1.770271e-09
PAK6	56924	hgsc.bcm.edu;ucsc.edu	37	15	40564552	40564552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	40564552	C	T	40564552	3	4	469	1	0	0	0	0	1	0	0	0	11411	623	22	2	996	2	PAK6	15	40564552	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10		40564552	61966840	43	27663											
RTF1	23168	broad.mit.edu	37	15	41769654	41769654	+	Splice_Site	SNP	A	T	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	41769654	T	T	41769654	5	4	469	1	0	0	0	0	0	0	1	0	13734	202	7	5	1735	5	RTF1	15	41769654	Splice_Site	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	1205102	41769654	60761738	44	27664											
SECISBP2L	9728	broad.mit.edu	37	15	49301547	49301547	+	Silent	SNP	A	C	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	49301547	C	C	49301547	2	2	469	1	0	0	0	0	0	0	0	1	14020	59	3	5		5	SECISBP2L	15	49301547	Silent	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	7531893	49301547	53229845	45	27665											
CCNF	899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2503516	2503516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	2503516	C	T	2503516	3	4	469	1	0	0	0	0	1	0	0	0	2924	855	30	2	1751	2	CCNF	16	2503516	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10		2503516	87851237	46	27666											
ADCY9	115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4043480	4043480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	4043480	G	T	4043480	3	4	469	1	0	0	0	0	1	0	0	0	301	1232	43	4	2177	4	ADCY9	16	4043480	Missense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10	1539964	4043480	86311273	47	27667	342	2									
ADCY9	115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4043482	4043482	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	4043482	A	T	4043482	2	4	469	1	0	0	0	0	0	0	0	1	301	291	11	5		5	ADCY9	16	4043482	Silent	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	2	4043482	86311271	48	27668	342	2									
CA7	766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	66887326	66887326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	66887326	G	T	66887326	3	4	469	1	0	0	0	0	1	0	0	0	2524	1165	41	4	746	4	CA7	16	66887326	Missense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10	62843844	66887326	23467427	49	27669											
AP1G1	164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71789925	71789925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	71789925	T	C	71789925	3	2	469	1	0	0	0	0	1	0	0	0	732	1783	62	3	1290	3	AP1G1	16	71789925	Missense_Mutation	SNP	T	TCGA-CJ-4636-01A-02D-1386-10	4902599	71789925	18564828	50	27670											
SLC13A2	9058	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26820678	26820678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	26820678	G	T	26820678	3	4	469	1	0	0	0	0	1	0	0	0	14405	1203	42	4	1141	4	SLC13A2	17	26820678	Missense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10		26820678	54374532	51	27671											
SUZ12	23512	hgsc.bcm.edu	37	17	30310080	30310080	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	-	30310080	T	-	30310080	7	5	469	1	0	1	0	1	0	0	0	0	15428	1406	49	0	1014	0	SUZ12	17	30310080	Frame_Shift_Del	DEL	T	TCGA-CJ-4636-01A-02D-1386-10	3489402	30310080	50885130	52	27672											
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197609	39197609	+	Missense_Mutation	SNP	C	C	A	rs138200823	by1000genomes	TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	39197609	C	A	39197609	3	1	469	1	0	0	0	0	1	0	0	0	8509	710	25	4	496	4	KRTAP1-1	17	39197609	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10	8887529	39197609	41997601	53	27673											
TMC8	147138	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76134202	76134202	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	76134202	T	A	76134202	3	1	469	1	0	0	0	0	1	0	0	0	16003	1551	54	5	1508	5	TMC8	17	76134202	Missense_Mutation	SNP	T	TCGA-CJ-4636-01A-02D-1386-10	36936593	76134202	5061008	54	27674											
RPTOR	57521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78935234	78935234	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	78935234	A	C	78935234	3	2	469	1	0	0	0	0	1	0	0	0	13678	247	9	5	3768	5	RPTOR	17	78935234	Missense_Mutation	SNP	A	TCGA-CJ-4636-01A-02D-1386-10	2801032	78935234	2259976	55	27675											
SYT4	6860	broad.mit.edu	37	18	40853880	40853880	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	40853880	T	T	40853880	3	4	469	1	0	0	0	0	1	0	0	0	15488	507	18	2	775	2	SYT4	18	40853880	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02D-1386-10		40853880	37223368	56	27676											
NEDD4L	23327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	55992365	55992365	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	A	55992365	G	A	55992365	2	1	469	1	0	0	0	0	0	0	0	1	10318	1161	41	2		2	NEDD4L	18	55992365	Silent	SNP	G	TCGA-CJ-4636-01A-02D-1386-10	15138485	55992365	22084883	57	27677											
TRIB3	57761	broad.mit.edu	37	20	377225	377225	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	-	377225	-	-	377225	7	5	469	1	0	1	0	1	0	0	0	0	16496	739	26	0	978	0	TRIB3	20	377225	Frame_Shift_Del	DEL	C	TCGA-CJ-4636-01A-02D-1386-10		377225	62648295	58	27678											
MKKS	8195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	10393658	10393658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	C	10393658	T	C	10393658	3	2	469	1	0	0	0	0	1	0	0	0	9607	1850	64	3	1223	3	MKKS	20	10393658	Missense_Mutation	SNP	T	TCGA-CJ-4636-01A-02D-1386-10	10016433	10393658	52631862	59	27679											
KIAA1210	57481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	118219357	118219357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4636-01A-02D-1386-10	TCGA-CJ-4636-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e5bd693-fb80-426a-bde3-16f33938ea45	769417fc-b475-4126-854a-409b97cdcb2f	T	118219357	G	T	118219357	3	4	469	1	0	0	0	0	1	0	0	0	8221	1203	42	4	304	4	KIAA1210	23	118219357	Missense_Mutation	SNP	G	TCGA-CJ-4636-01A-02D-1386-10		118219357	37051203	60	27680											
VHL	7428	hgsc.bcm.edu	37	3	10183665	10183665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4636-01A-02W-1382-10	TCGA-CJ-4636-11A-01W-1244-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	c437a272-1a90-4b2d-bf5b-e3602527c210	5b191139-f06e-4add-a934-f6116591658f	T	10183665	C	T	10183665	3	4	470	1	0	0	0	0	1	0	0	0	17174	652	23	1	136	1	VHL	3	10183665	Missense_Mutation	SNP	C	TCGA-CJ-4636-01A-02W-1382-10		10183665	187838765	1	27681											
SPOCD1	90853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32266115	32266115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	T	32266115	A	T	32266115	3	4	471	1	0	0	0	0	1	0	0	0	15090	275	10	5	2173	5	SPOCD1	1	32266115	Missense_Mutation	SNP	A	TCGA-CJ-4637-01A-02D-1386-10		32266115	216984506	1	27682											
ST3GAL3	6487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44386570	44386570	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	44386570	T	A	44386570	4	1	471	1	0	0	0	0	0	1	0	0	15228	1471	51	5	1257	5	ST3GAL3	1	44386570	Nonsense_Mutation	SNP	T	TCGA-CJ-4637-01A-02D-1386-10	12120455	44386570	204864051	2	27683											
CELF3	11189	broad.mit.edu;hgsc.bcm.edu	37	1	151681728	151681728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	151681728	G	A	151681728	3	1	471	1	0	0	0	0	1	0	0	0	3219	1029	36	2	1059	2	CELF3	1	151681728	Missense_Mutation	SNP	G	TCGA-CJ-4637-01A-02D-1386-10	107295158	151681728	97568893	3	27684											
RRM2	6241	hgsc.bcm.edu	37	2	10262859	10262859	+	Silent	SNP	G	G	A	rs72542787	bycluster;byfrequency;by1000genomes	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	10262859	G	A	10262859	2	1	471	1	0	0	0	0	0	0	0	1	13695	1248	44	2		2	RRM2	2	10262859	Silent	SNP	G	TCGA-CJ-4637-01A-02D-1386-10		10262859	232936514	4	27685											
MFSD9	84804	hgsc.bcm.edu	37	2	103353153	103353153	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	-	103353153	G	-	103353153	7	5	471	1	0	1	0	1	0	0	0	0	9546	1103	39	0	1331	0	MFSD9	2	103353153	Frame_Shift_Del	DEL	G	TCGA-CJ-4637-01A-02D-1386-10	93090294	103353153	139846220	5	27686											
CXCR2	3579	broad.mit.edu;ucsc.edu	37	2	218999551	218999551	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	T	218999551	T	T	218999551	2	4	471	1	0	0	0	0	0	0	0	1	4093	477	17	2		2	CXCR2	2	218999551	Silent	SNP	C	TCGA-CJ-4637-01A-02D-1386-10	115646398	218999551	24199822	6	27687											
C2orf83	56918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228497787	228497787	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	228497787	G	A	228497787	2	1	471	1	0	0	0	0	0	0	0	1	2200	1219	43	2		2	C2orf83	2	228497787	Silent	SNP	G	TCGA-CJ-4637-01A-02D-1386-10	9498236	228497787	14701586	7	27688											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188204	10188204	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	-	10188204	T	-	10188204	7	5	471	1	0	1	0	1	0	0	0	0	17174	1609	56	0	353	0	VHL	3	10188204	Frame_Shift_Del	DEL	T	TCGA-CJ-4637-01A-02D-1386-10		10188204	187834226	8	27689											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52442512	52442512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	C	52442512	T	C	52442512	3	2	471	1	0	0	0	0	1	0	0	0	1311	1493	52	3	2012	3	BAP1	3	52442512	Missense_Mutation	SNP	T	TCGA-CJ-4637-01A-02D-1386-10	42254308	52442512	145579918	9	27690											
WDR52	55779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113127995	113127995	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	G	113127995	T	G	113127995	3	3	471	1	0	0	0	0	1	0	0	0	17316	1435	50	5	4847	5	WDR52	3	113127995	Missense_Mutation	SNP	T	TCGA-CJ-4637-01A-02D-1386-10	60685483	113127995	84894435	10	27691											
ADCY5	111	broad.mit.edu	37	3	123049743	123049743	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	T	123049743	T	T	123049743	3	4	471	1	0	0	0	0	1	0	0	0	297	739	26	2	2214	2	ADCY5	3	123049743	Missense_Mutation	SNP	C	TCGA-CJ-4637-01A-02D-1386-10	9921748	123049743	74972687	11	27692											
MUC4	4585	hgsc.bcm.edu	37	3	195510073	195510073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	195510073	G	A	195510073	3	1	471	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195510073	Missense_Mutation	SNP	G	TCGA-CJ-4637-01A-02D-1386-10	72460330	195510073	2512357	12	27693											
ITGA1	3672	broad.mit.edu;ucsc.edu	37	5	52145320	52145320	+	Splice_Site	SNP	G	T	T	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	T	52145320	T	T	52145320	5	4	471	1	0	0	0	0	0	0	1	0	7879	1275	44	4	189	4	ITGA1	5	52145320	Splice_Site	SNP	G	TCGA-CJ-4637-01A-02D-1386-10		52145320	128769940	13	27694											
ENC1	8507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	73931537	73931537	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	G	73931537	C	G	73931537	3	3	471	1	0	0	0	0	1	0	0	0	5115	796	28	4	999	4	ENC1	5	73931537	Missense_Mutation	SNP	C	TCGA-CJ-4637-01A-02D-1386-10	21786217	73931537	106983723	14	27695											
PCDHGA3	56112	broad.mit.edu	37	5	140725547	140725547	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	T	140725547	T	T	140725547	2	4	471	1	0	0	0	0	0	0	0	1	11562	535	19	1		1	PCDHGA3	5	140725547	Silent	SNP	C	TCGA-CJ-4637-01A-02D-1386-10	66794010	140725547	40189713	15	27696											
CLK4	57396	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	178050273	178050273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	G	178050273	A	G	178050273	3	3	471	1	0	0	0	0	1	0	0	0	3541	43	2	3	1348	3	CLK4	5	178050273	Missense_Mutation	SNP	A	TCGA-CJ-4637-01A-02D-1386-10	37324726	178050273	2864987	16	27697											
C6orf70	55780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	170179296	170179296	+	Silent	SNP	T	T	A	rs79095717	alternate_allele	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	170179296	T	A	170179296	2	1	471	1	0	0	0	0	0	0	0	1	2372	1567	55	5		5	C6orf70	6	170179296	Silent	SNP	T	TCGA-CJ-4637-01A-02D-1386-10		170179296	935771	17	27698											
STK31	56164	broad.mit.edu	37	7	23750185	23750185	+	Intron	SNP	C	A	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	23750185	A	A	23750185	1	1	471	0	1	0	0	0	0	0	0	0	15308	551	19	4		4	STK31	7	23750185	Intron	SNP	C	TCGA-CJ-4637-01A-02D-1386-10		23750185	135388478	18	27699											
EPPK1	83481	hgsc.bcm.edu	37	8	144940506	144940506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	T	144940506	C	T	144940506	3	4	471	1	0	0	0	0	1	0	0	0	5192	768	27	1	350	1	EPPK1	8	144940506	Missense_Mutation	SNP	C	TCGA-CJ-4637-01A-02D-1386-10		144940506	1423516	19	27700											
VCP	7415	broad.mit.edu;ucsc.edu	37	9	35068351	35068351	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	35068351	A	A	35068351	3	1	471	1	0	0	0	0	1	0	0	0	17152	507	18	4	2458	4	VCP	9	35068351	Missense_Mutation	SNP	C	TCGA-CJ-4637-01A-02D-1386-10		35068351	106145080	20	27701											
KLF9	687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	73027946	73027946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	73027946	C	A	73027946	4	1	471	1	0	0	0	0	0	1	0	0	8360	864	30	4	408	4	KLF9	9	73027946	Nonsense_Mutation	SNP	C	TCGA-CJ-4637-01A-02D-1386-10	37959595	73027946	68185485	21	27702											
PRUNE2	158471	broad.mit.edu	37	9	79469063	79469063	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	C	79469063	C	C	79469063	3	2	471	1	0	0	0	0	1	0	0	0	12651	1435	50	3	9240	3	PRUNE2	9	79469063	Missense_Mutation	SNP	T	TCGA-CJ-4637-01A-02D-1386-10	6441117	79469063	61744368	22	27703											
PCDH15	65217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	55700700	55700700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	55700700	G	A	55700700	3	1	471	1	0	0	0	0	1	0	0	0	11518	1261	44	2	4368	2	PCDH15	10	55700700	Missense_Mutation	SNP	G	TCGA-CJ-4637-01A-02D-1386-10		55700700	79834047	23	27704											
GRID1	2894	broad.mit.edu;ucsc.edu	37	10	87628903	87628903	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	G	87628903	G	G	87628903	3	3	471	1	0	0	0	0	1	0	0	0	6778	1464	51	5	2258	5	GRID1	10	87628903	Missense_Mutation	SNP	T	TCGA-CJ-4637-01A-02D-1386-10	31928203	87628903	47905844	24	27705											
RASGRP2	10235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64503123	64503123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	64503123	G	A	64503123	3	1	471	1	0	0	0	0	1	0	0	0	13088	1145	40	1	666	1	RASGRP2	11	64503123	Missense_Mutation	SNP	G	TCGA-CJ-4637-01A-02D-1386-10		64503123	70503393	25	27706											
LTBR	4055	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6495606	6495606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	T	6495606	G	T	6495606	3	4	471	1	0	0	0	0	1	0	0	0	9084	1377	48	4	685	4	LTBR	12	6495606	Missense_Mutation	SNP	G	TCGA-CJ-4637-01A-02D-1386-10		6495606	127356289	26	27707											
ARHGAP9	64333	broad.mit.edu;hgsc.bcm.edu	37	12	57871324	57871324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	T	57871324	G	T	57871324	3	4	471	1	0	0	0	0	1	0	0	0	889	1232	43	4	1581	4	ARHGAP9	12	57871324	Missense_Mutation	SNP	G	TCGA-CJ-4637-01A-02D-1386-10	51375718	57871324	75980571	27	27708											
IGDCC4	57722	hgsc.bcm.edu	37	15	65681661	65681662	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	C	65681662	-	C	65681661	7	5	471	1	0	1	1	0	0	0	0	0	7576	1203	42	0	1283	0	IGDCC4	15	65681661	Frame_Shift_Ins	INS	-	TCGA-CJ-4637-01A-02D-1386-10		65681661	36849731	28	27709											
C16orf88	400506	broad.mit.edu;ucsc.edu	37	16	19718398	19718398	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	G	19718398	G	G	19718398	3	3	471	1	0	0	0	0	1	0	0	0	1843	304	11	3	169	3	C16orf88	16	19718398	Missense_Mutation	SNP	A	TCGA-CJ-4637-01A-02D-1386-10		19718398	70636355	29	27710											
C17orf57	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	45452174	45452174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	G	45452174	C	G	45452174	3	3	471	1	0	0	0	0	1	0	0	0	1867	913	32	4	1248	4	C17orf57	17	45452174	Missense_Mutation	SNP	C	TCGA-CJ-4637-01A-02D-1386-10		45452174	35743036	30	27711											
TEX14	56155	broad.mit.edu	37	17	56651592	56651592	+	Silent	SNP	T	C	C	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	C	56651592	C	C	56651592	2	2	471	1	0	0	0	0	0	0	0	1	15790	1606	56	3		3	TEX14	17	56651592	Silent	SNP	T	TCGA-CJ-4637-01A-02D-1386-10	11199418	56651592	24543618	31	27712											
ELK1	2002	broad.mit.edu	37	X	47498682	47498682	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b8480571-ee08-4fa1-b509-1331a8fbc075	c246767f-2df0-4836-b43f-a771f0782118	A	47498682	A	A	47498682	3	1	471	1	0	0	0	0	1	0	0	0	5061	1000	35	2	1036	2	ELK1	23	47498682	Missense_Mutation	SNP	G	TCGA-CJ-4637-01A-02D-1386-10		47498682	107771878	32	27713											
RLF	6018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40704122	40704122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	40704122	G	A	40704122	3	1	472	1	0	0	0	0	1	0	0	0	13402	1291	45	2	3778	2	RLF	1	40704122	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		40704122	208546499	1	27714											
MUTYH	4595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	45796978	45796978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	G	45796978	A	G	45796978	3	3	472	1	0	0	0	0	1	0	0	0	10000	188	7	3	309	3	MUTYH	1	45796978	Missense_Mutation	SNP	A	TCGA-CJ-4638-01A-02D-1386-10	5092856	45796978	203453643	2	27715											
CLCA1	1179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	86957042	86957042	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	86957042	G	A	86957042	2	1	472	1	0	0	0	0	0	0	0	1	3459	962	34	2		2	CLCA1	1	86957042	Silent	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	41160064	86957042	162293579	3	27716											
ATP1A1	476	broad.mit.edu	37	1	116941357	116941357	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	116941357	A	A	116941357	3	1	472	1	0	0	0	0	1	0	0	0	1128	1290	45	2	2317	2	ATP1A1	1	116941357	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	29984315	116941357	132309264	4	27717											
QSOX1	5768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	180165532	180165532	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	G	180165532	T	G	180165532	3	3	472	1	0	0	0	0	1	0	0	0	12896	1783	62	5	1650	5	QSOX1	1	180165532	Missense_Mutation	SNP	T	TCGA-CJ-4638-01A-02D-1386-10	63224175	180165532	69085089	5	27718											
APOB	338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	21242762	21242762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	21242762	C	A	21242762	3	1	472	1	0	0	0	0	1	0	0	0	785	593	21	4	10903	4	APOB	2	21242762	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10		21242762	221956611	6	27719											
HK2	3099	broad.mit.edu;ucsc.edu	37	2	75107668	75107668	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	75107668	T	T	75107668	2	4	472	1	0	0	0	0	0	0	0	1	7198	668	24	2		2	HK2	2	75107668	Silent	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	53864906	75107668	168091705	7	27720											
DPP4	1803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	162894910	162894910	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	162894910	A	C	162894910	3	2	472	1	0	0	0	0	1	0	0	0	4731	101	4	5	1861	5	DPP4	2	162894910	Missense_Mutation	SNP	A	TCGA-CJ-4638-01A-02D-1386-10	87787242	162894910	80304463	8	27721											
SETD5	55209	hgsc.bcm.edu	37	3	9517686	9517686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	9517686	T	C	9517686	3	2	472	1	0	0	0	0	1	0	0	0	14147	1522	53	3	4322	3	SETD5	3	9517686	Missense_Mutation	SNP	T	TCGA-CJ-4638-01A-02D-1386-10		9517686	188504744	9	27722											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188218	10188218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	10188218	G	T	10188218	3	4	472	1	0	0	0	0	1	0	0	0	17174	942	33	4	367	4	VHL	3	10188218	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	670532	10188218	187834212	10	27723											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52443574	52443574	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	52443574	G	A	52443574	4	1	472	1	0	0	0	0	0	1	0	0	1311	1299	45	2	2131	2	BAP1	3	52443574	Nonsense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	42255356	52443574	145578856	11	27724											
HTR1F	3355	hgsc.bcm.edu;ucsc.edu	37	3	88040822	88040823	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	88040823	-	T	88040822	7	5	472	1	0	1	1	0	0	0	0	0	7447	681	24	0	925	0	HTR1F	3	88040822	Frame_Shift_Ins	INS	-	TCGA-CJ-4638-01A-02D-1386-10	35597248	88040822	109981608	12	27725											
CD86	942	broad.mit.edu;ucsc.edu	37	3	121825286	121825286	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	121825286	C	C	121825286	3	2	472	1	0	0	0	0	1	0	0	0	3045	1290	45	4	656	4	CD86	3	121825286	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	33784464	121825286	76197144	13	27726											
ANKRD17	26057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	73956463	73956463	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	73956463	T	A	73956463	2	1	472	1	0	0	0	0	0	0	0	1	646	1567	55	5		5	ANKRD17	4	73956463	Silent	SNP	T	TCGA-CJ-4638-01A-02D-1386-10		73956463	117197813	14	27727											
ANK2	287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	114290829	114290829	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	114290829	A	T	114290829	2	4	472	1	0	0	0	0	0	0	0	1	621	381	14	5		5	ANK2	4	114290829	Silent	SNP	A	TCGA-CJ-4638-01A-02D-1386-10	40334366	114290829	76863447	15	27728											
NEIL3	55247	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	178283613	178283613	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	178283613	T	A	178283613	2	1	472	1	0	0	0	0	0	0	0	1	10327	1771	62	5		5	NEIL3	4	178283613	Silent	SNP	T	TCGA-CJ-4638-01A-02D-1386-10	63992784	178283613	12870663	16	27729											
SORBS2	8470	broad.mit.edu;hgsc.bcm.edu	37	4	186508841	186508841	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	186508841	C	T	186508841	2	4	472	1	0	0	0	0	0	0	0	1	14941	869	30	2		2	SORBS2	4	186508841	Silent	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	8225228	186508841	4645435	17	27730											
SEMA5A	9037	hgsc.bcm.edu;ucsc.edu	37	5	9122825	9122825	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	-	9122825	G	-	9122825	7	5	472	1	0	1	0	1	0	0	0	0	14050	1116	39	0	1540	0	SEMA5A	5	9122825	Frame_Shift_Del	DEL	G	TCGA-CJ-4638-01A-02D-1386-10		9122825	171792435	18	27731											
GPR98	84059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	89989763	89989763	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	89989763	T	A	89989763	3	1	472	1	0	0	0	0	1	0	0	0	6728	1696	59	5	7320	5	GPR98	5	89989763	Missense_Mutation	SNP	T	TCGA-CJ-4638-01A-02D-1386-10	80866938	89989763	90925497	19	27732											
BTNL9	153579	broad.mit.edu;hgsc.bcm.edu	37	5	180475150	180475150	+	Silent	SNP	C	C	T	rs112433732	bycluster	TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	180475150	C	T	180475150	2	4	472	1	0	0	0	0	0	0	0	1	1570	874	31	1		1	BTNL9	5	180475150	Silent	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	90485387	180475150	440110	20	27733											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152647465	152647465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	152647465	G	A	152647465	3	1	472	1	0	0	0	0	1	0	0	0	15457	1115	39	1	11479	1	SYNE1	6	152647465	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		152647465	18467602	21	27734											
SCRN1	9805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	29963599	29963599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	29963599	C	A	29963599	3	1	472	1	0	0	0	0	1	0	0	0	13951	826	29	4	29	4	SCRN1	7	29963599	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10		29963599	129175064	22	27735											
RELN	5649	hgsc.bcm.edu;ucsc.edu	37	7	103243784	103243793	+	Frame_Shift_Del	DEL	GACACCACAC	GACACCACAC	-	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	GACACCACAC	GACACCACAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	-	103243793	GACACCACAC	-	103243784	7	5	472	1	0	1	0	1	0	0	0	0	13233	1277	45	0	7250	0	RELN	7	103243784	Frame_Shift_Del	DEL	GACACCACAC	TCGA-CJ-4638-01A-02D-1386-10	73280185	103243784	55894879	23	27736											
AASS	10157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	121766489	121766489	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	121766489	T	A	121766489	4	1	472	1	0	0	0	0	0	1	0	0	24	1792	62	5	2452	5	AASS	7	121766489	Nonsense_Mutation	SNP	T	TCGA-CJ-4638-01A-02D-1386-10	18522705	121766489	37372174	24	27737											
EPHB6	2051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	142563846	142563846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	142563846	G	T	142563846	3	4	472	1	0	0	0	0	1	0	0	0	5180	1000	35	4	1252	4	EPHB6	7	142563846	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	20797357	142563846	16574817	25	27738											
XKR6	286046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	10782282	10782282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	10782282	G	A	10782282	3	1	472	1	0	0	0	0	1	0	0	0	17447	1145	40	1	1110	1	XKR6	8	10782282	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		10782282	135581740	26	27739											
MATN2	4147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	99028778	99028778	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	99028778	T	C	99028778	2	2	472	1	0	0	0	0	0	0	0	1	9341	1596	56	3		3	MATN2	8	99028778	Silent	SNP	T	TCGA-CJ-4638-01A-02D-1386-10	88246496	99028778	47335244	27	27740											
COL14A1	7373	hgsc.bcm.edu;ucsc.edu	37	8	121259910	121259910	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	121259910	C	T	121259910	2	4	472	1	0	0	0	0	0	0	0	1	3673	697	25	2		2	COL14A1	8	121259910	Silent	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	22231132	121259910	25104112	28	27741											
COL22A1	169044	hgsc.bcm.edu	37	8	139824126	139824127	+	In_Frame_Ins	INS	-	-	GGTGGA	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	GGTGGA	139824127	-	GGTGGA	139824126	7	5	472	1	0	1	1	0	0	0	0	0	3683	1219	43	0	3743	0	COL22A1	8	139824126	In_Frame_Ins	INS	-	TCGA-CJ-4638-01A-02D-1386-10	18564216	139824126	6539896	29	27742											
KCNV2	169522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	2729659	2729659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	2729659	G	A	2729659	3	1	472	1	0	0	0	0	1	0	0	0	8102	971	34	2	1576	2	KCNV2	9	2729659	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		2729659	138483772	30	27743											
IL33	90865	broad.mit.edu;ucsc.edu	37	9	6251225	6251225	+	Silent	SNP	C	G	G	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	G	6251225	G	G	6251225	2	3	472	1	0	0	0	0	0	0	0	1	7700	842	30	4		4	IL33	9	6251225	Silent	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	3521566	6251225	134962206	31	27744											
MSMP	692094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35753713	35753713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	35753713	G	A	35753713	3	1	472	1	0	0	0	0	1	0	0	0	9891	1306	46	2	244	2	MSMP	9	35753713	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	29502488	35753713	105459718	32	27745											
SPTAN1	6709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131371420	131371420	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	131371420	C	T	131371420	4	4	472	1	0	0	0	0	0	1	0	0	15129	595	21	2	4753	2	SPTAN1	9	131371420	Nonsense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	95617707	131371420	9842011	33	27746											
SEC24C	9632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75520019	75520019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	75520019	G	A	75520019	3	1	472	1	0	0	0	0	1	0	0	0	14009	971	34	2	739	2	SEC24C	10	75520019	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		75520019	60014728	34	27747											
PTPMT1	114971	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47593082	47593082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	47593082	C	A	47593082	3	1	472	1	0	0	0	0	1	0	0	0	12789	855	30	4	626	4	PTPMT1	11	47593082	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10		47593082	87413434	35	27748											
OR4C12	283093	broad.mit.edu;hgsc.bcm.edu	37	11	50003858	50003858	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	50003858	G	A	50003858	2	1	472	1	0	0	0	0	0	0	0	1	11053	1165	41	2		2	OR4C12	11	50003858	Silent	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	2410776	50003858	85002658	36	27749											
CACNA1C	775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	2778099	2778099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	2778099	C	T	2778099	3	4	472	1	0	0	0	0	1	0	0	0	2542	782	27	1	5100	1	CACNA1C	12	2778099	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10		2778099	131073796	37	27750											
ANO2	57101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	5672713	5672713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	5672713	C	T	5672713	3	4	472	1	0	0	0	0	1	0	0	0	697	536	19	1	251	1	ANO2	12	5672713	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	2894614	5672713	128179182	38	27751											
ETV6	2120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	11905414	11905414	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	11905414	A	T	11905414	3	4	472	1	0	0	0	0	1	0	0	0	5285	304	11	5	70	5	ETV6	12	11905414	Missense_Mutation	SNP	A	TCGA-CJ-4638-01A-02D-1386-10	6232701	11905414	121946481	39	27752											
KLHDC5	57542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	27933951	27933951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	27933951	T	C	27933951	3	2	472	1	0	0	0	0	1	0	0	0	8366	1725	60	3	690	3	KLHDC5	12	27933951	Missense_Mutation	SNP	T	TCGA-CJ-4638-01A-02D-1386-10	16028537	27933951	105917944	40	27753											
ABCD2	225	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	39980001	39980001	+	Missense_Mutation	SNP	C	C	G	rs151149571	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	G	39980001	C	G	39980001	3	3	472	1	0	0	0	0	1	0	0	0	61	536	19	4	493	4	ABCD2	12	39980001	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	12046050	39980001	93871894	41	27754											
KL	9365	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33634984	33634984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	33634984	G	A	33634984	3	1	472	1	0	0	0	0	1	0	0	0	8338	1145	40	1	1782	1	KL	13	33634984	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		33634984	81534894	42	27755											
HECTD1	25831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	31613394	31613394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	G	31613394	T	G	31613394	3	3	472	1	0	0	0	0	1	0	0	0	7046	1792	62	5	5239	5	HECTD1	14	31613394	Missense_Mutation	SNP	T	TCGA-CJ-4638-01A-02D-1386-10		31613394	75736146	43	27756											
KIAA0586	9786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58949396	58949396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	58949396	C	T	58949396	3	4	472	1	0	0	0	0	1	0	0	0	8193	913	32	2	2960	2	KIAA0586	14	58949396	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	27336002	58949396	48400144	44	27757											
YLPM1	56252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75279329	75279329	+	Splice_Site	SNP	A	A	G	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	G	75279329	A	G	75279329	5	3	472	1	0	0	0	0	0	0	1	0	17498	434	15	3	5388	3	YLPM1	14	75279329	Splice_Site	SNP	A	TCGA-CJ-4638-01A-02D-1386-10	16329933	75279329	32070211	45	27758											
MOAP1	64112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	93650048	93650050	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	-	93650050	TTC	-	93650048	7	5	472	1	0	1	0	1	0	0	0	0	9687	1490	52	0	519	0	MOAP1	14	93650048	In_Frame_Del	DEL	TTC	TCGA-CJ-4638-01A-02D-1386-10	18370719	93650048	13699492	46	27759											
TMEM87A	25963	broad.mit.edu;ucsc.edu	37	15	42529668	42529668	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	42529668	A	A	42529668	3	1	472	1	0	0	0	0	1	0	0	0	16222	1406	49	5	885	5	TMEM87A	15	42529668	Missense_Mutation	SNP	T	TCGA-CJ-4638-01A-02D-1386-10		42529668	60001724	47	27760											
NKD1	85407	broad.mit.edu;ucsc.edu	37	16	50664121	50664121	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	G	50664121	G	G	50664121	3	3	472	1	0	0	0	0	1	0	0	0	10448	217	8	3	513	3	NKD1	16	50664121	Missense_Mutation	SNP	A	TCGA-CJ-4638-01A-02D-1386-10		50664121	39690632	48	27761											
CNOT1	23019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58571103	58571106	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	TACT	TACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	-	58571106	TACT	-	58571103	7	5	472	1	0	1	0	1	0	0	0	0	3619	1509	53	0	1738	0	CNOT1	16	58571103	Frame_Shift_Del	DEL	TACT	TCGA-CJ-4638-01A-02D-1386-10	7906982	58571103	31783650	49	27762											
PER1	5187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8047092	8047092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	8047092	T	C	8047092	3	2	472	1	0	0	0	0	1	0	0	0	11736	1406	49	3	1328	3	PER1	17	8047092	Missense_Mutation	SNP	T	TCGA-CJ-4638-01A-02D-1386-10		8047092	73148118	50	27763											
SLFN11	91607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	33690266	33690266	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	33690266	C	T	33690266	2	4	472	1	0	0	0	0	0	0	0	1	14746	639	23	1		1	SLFN11	17	33690266	Silent	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	25643174	33690266	47504944	51	27764											
BCAS3	54828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	58786584	58786584	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	58786584	A	T	58786584	2	4	472	1	0	0	0	0	0	0	0	1	1352	204	8	5		5	BCAS3	17	58786584	Silent	SNP	A	TCGA-CJ-4638-01A-02D-1386-10	25096318	58786584	22408626	52	27765											
JMJD6	23210	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74720100	74720100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	74720100	G	T	74720100	3	4	472	1	0	0	0	0	1	0	0	0	7960	1290	45	4	709	4	JMJD6	17	74720100	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	15933516	74720100	6475110	53	27766											
PSMA8	143471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	23714010	23714010	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	23714010	G	A	23714010	2	1	472	1	0	0	0	0	0	0	0	1	12683	1103	39	1		1	PSMA8	18	23714010	Silent	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		23714010	54363238	54	27767											
FAM59A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	29867878	29867878	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	29867878	G	C	29867878	3	2	472	1	0	0	0	0	1	0	0	0	5599	1299	45	4	1957	4	FAM59A	18	29867878	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	6153868	29867878	48209370	55	27768											
DENND1C	79958	broad.mit.edu;ucsc.edu	37	19	6467951	6467951	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	6467951	C	C	6467951	3	2	472	1	0	0	0	0	1	0	0	0	4430	1174	41	4	439	4	DENND1C	19	6467951	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		6467951	52661032	56	27769											
ZNF844	284391	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12186656	12186656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	12186656	C	A	12186656	3	1	472	1	0	0	0	0	1	0	0	0	18202	827	29	4	735	4	ZNF844	19	12186656	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	5718705	12186656	46942327	57	27770											
HOOK2	29911	broad.mit.edu	37	19	12883813	12883813	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	12883813	C	C	12883813	3	2	472	1	0	0	0	0	1	0	0	0	7290	1357	47	4	1989	4	HOOK2	19	12883813	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	697157	12883813	46245170	58	27771											
OR10H5	284433	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15904911	15904911	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	G	15904911	C	G	15904911	3	3	472	1	0	0	0	0	1	0	0	0	10916	913	32	4	55	4	OR10H5	19	15904911	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	3021098	15904911	43224072	59	27772											
ZNF611	81856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53209500	53209500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	53209500	G	A	53209500	3	1	472	1	0	0	0	0	1	0	0	0	18049	1290	45	2	1313	2	ZNF611	19	53209500	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	37304589	53209500	5919483	60	27773											
PEG3	5178	broad.mit.edu;ucsc.edu	37	19	57330017	57330017	+	Missense_Mutation	SNP	G	T	T	rs80150589	bycluster;byfrequency;by1000genomes	TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	57330017	T	T	57330017	3	4	472	1	0	0	0	0	1	0	0	0	11727	1368	48	4	4058	4	PEG3	19	57330017	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	4120517	57330017	1798966	61	27774											
PREX1	57580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47309286	47309286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	47309286	G	C	47309286	3	2	472	1	0	0	0	0	1	0	0	0	12486	1280	45	4	4151	4	PREX1	20	47309286	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		47309286	15716234	62	27775											
BMP7	655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	55803435	55803435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	55803435	C	A	55803435	3	1	472	1	0	0	0	0	1	0	0	0	1465	884	31	4	858	4	BMP7	20	55803435	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	8494149	55803435	7222085	63	27776											
MCM3AP	8888	broad.mit.edu;hgsc.bcm.edu	37	21	47692488	47692488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	47692488	C	T	47692488	3	4	472	1	0	0	0	0	1	0	0	0	9395	632	22	2	3574	2	MCM3AP	21	47692488	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10		47692488	437407	64	27777											
CECR2	27443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	17978494	17978494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	17978494	G	T	17978494	3	4	472	1	0	0	0	0	1	0	0	0	3208	1232	43	4	344	4	CECR2	22	17978494	Missense_Mutation	SNP	G	TCGA-CJ-4638-01A-02D-1386-10		17978494	33326072	65	27778											
SLC7A4	6545	broad.mit.edu	37	22	21385373	21385373	+	Silent	SNP	G	C	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	21385373	C	C	21385373	2	2	472	1	0	0	0	0	0	0	0	1	14712	987	35	4		4	SLC7A4	22	21385373	Silent	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	3406879	21385373	29919193	66	27779											
NF2	4771	broad.mit.edu;hgsc.bcm.edu	37	22	30050715	30050715	+	Splice_Site	SNP	G	G	C	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	C	30050715	G	C	30050715	5	2	472	1	0	0	0	0	0	0	1	0	10364	1275	44	4	535	4	NF2	22	30050715	Splice_Site	SNP	G	TCGA-CJ-4638-01A-02D-1386-10	8665342	30050715	21253851	67	27780											
FAM47A	158724	hgsc.bcm.edu	37	X	34149658	34149693	+	In_Frame_Del	DEL	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	-	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	-	34149693	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	-	34149658	7	5	472	1	0	1	0	1	0	0	0	0	5576	446	16	0	1641	0	FAM47A	23	34149658	In_Frame_Del	DEL	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	TCGA-CJ-4638-01A-02D-1386-10		34149658	121120902	68	27781											
USP51	158880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	55514571	55514571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	55514571	C	T	55514571	3	4	472	1	0	0	0	0	1	0	0	0	17095	922	32	2	1337	2	USP51	23	55514571	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	21364913	55514571	99755989	69	27782											
ATP7A	538	hgsc.bcm.edu	37	X	77284798	77284799	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	A	77284799	-	A	77284798	7	5	472	1	0	1	1	0	0	0	0	0	1190	595	21	0	3022	0	ATP7A	23	77284798	Frame_Shift_Ins	INS	-	TCGA-CJ-4638-01A-02D-1386-10	21770227	77284798	77985762	70	27783											
COL4A5	1287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107924995	107924995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	107924995	C	T	107924995	3	4	472	1	0	0	0	0	1	0	0	0	3696	855	30	2	4264	2	COL4A5	23	107924995	Missense_Mutation	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	30640197	107924995	47345565	71	27784											
ZCCHC16	340595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	111698754	111698754	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4638-01A-02D-1386-10	TCGA-CJ-4638-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbc187b0-fafe-4b1f-9af0-6714942414ab	e87fd364-fa8b-43c5-a572-8b136f8f2086	T	111698754	C	T	111698754	2	4	472	1	0	0	0	0	0	0	0	1	17596	813	29	2		2	ZCCHC16	23	111698754	Silent	SNP	C	TCGA-CJ-4638-01A-02D-1386-10	3773759	111698754	43571806	72	27785											
TPRG1L	127262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	3545158	3545158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	3545158	A	G	3545158	3	3	473	1	0	0	0	0	1	0	0	0	16431	410	15	3	828	3	TPRG1L	1	3545158	Missense_Mutation	SNP	A	TCGA-CJ-4639-01A-02D-1386-10		3545158	245705463	1	27786											
PTCHD2	57540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11594487	11594487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	11594487	G	A	11594487	3	1	473	1	0	0	0	0	1	0	0	0	12743	1087	38	1	3491	1	PTCHD2	1	11594487	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	8049329	11594487	237656134	2	27787	343	2									
PTCHD2	57540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11594488	11594488	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	11594488	C	T	11594488	2	4	473	1	0	0	0	0	0	0	0	1	12743	784	28	2		2	PTCHD2	1	11594488	Silent	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	1	11594488	237656133	3	27788	343	2									
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19445444	19445444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	19445444	T	G	19445444	3	3	473	1	0	0	0	0	1	0	0	0	16916	1551	54	5	5232	5	UBR4	1	19445444	Missense_Mutation	SNP	T	TCGA-CJ-4639-01A-02D-1386-10	7850956	19445444	229805177	4	27789											
SMG5	23381	hgsc.bcm.edu	37	1	156252471	156252473	+	Frame_Shift_Del	DEL	TGG	TGG	-	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	-	156252473	TGG	-	156252471	7	5	473	1	0	1	0	1	0	0	0	0	14809	1464	51	0	3137	0	SMG5	1	156252471	Frame_Shift_Del	DEL	TGG	TCGA-CJ-4639-01A-02D-1386-10	136807027	156252471	92998150	5	27790											
POU2F1	5451	broad.mit.edu;ucsc.edu	37	1	167365546	167365546	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	167365546	A	A	167365546	2	1	473	1	0	0	0	0	0	0	0	1	12278	1161	41	2		2	POU2F1	1	167365546	Silent	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	11113075	167365546	81885075	6	27791											
RGS2	5997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	192780679	192780679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	192780679	G	T	192780679	3	4	473	1	0	0	0	0	1	0	0	0	13315	1174	41	4	607	4	RGS2	1	192780679	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	25415133	192780679	56469942	7	27792											
NUCKS1	64710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205696856	205696856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	205696856	G	C	205696856	3	2	473	1	0	0	0	0	1	0	0	0	10727	1095	38	4	606	4	NUCKS1	1	205696856	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	12916177	205696856	43553765	8	27793											
USH2A	7399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	216019306	216019306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	216019306	G	A	216019306	3	1	473	1	0	0	0	0	1	0	0	0	17048	942	33	2	6805	2	USH2A	1	216019306	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	10322450	216019306	33231315	9	27794											
C2orf86	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	63401948	63401948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	63401948	G	C	63401948	3	2	473	1	0	0	0	0	1	0	0	0	2203	1368	48	4	321	4	C2orf86	2	63401948	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10		63401948	179797425	10	27795											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141128833	141128833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	141128833	C	T	141128833	3	4	473	1	0	0	0	0	1	0	0	0	8962	536	19	1	3097	1	LRP1B	2	141128833	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	77726885	141128833	102070540	11	27796											
COL3A1	1281	hgsc.bcm.edu;ucsc.edu	37	2	189856440	189856440	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	-	189856440	G	-	189856440	7	5	473	1	0	1	0	1	0	0	0	0	3690	1348	47	0	993	0	COL3A1	2	189856440	Frame_Shift_Del	DEL	G	TCGA-CJ-4639-01A-02D-1386-10	48727607	189856440	53342933	12	27797											
DNAH7	56171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	196750888	196750888	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	196750888	G	A	196750888	4	1	473	1	0	0	0	0	0	1	0	0	4608	1066	37	1	6687	1	DNAH7	2	196750888	Nonsense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	6894448	196750888	46448485	13	27798											
MCM2	4171	broad.mit.edu;hgsc.bcm.edu	37	3	127337930	127337930	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	127337930	G	T	127337930	4	4	473	1	0	0	0	0	0	1	0	0	9393	1175	41	4	2124	4	MCM2	3	127337930	Nonsense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10		127337930	70684500	14	27799											
TRIM42	287015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	140401925	140401925	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	140401925	C	T	140401925	2	4	473	1	0	0	0	0	0	0	0	1	16529	535	19	1		1	TRIM42	3	140401925	Silent	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	13063995	140401925	57620505	15	27800											
OTOL1	131149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	161221335	161221335	+	Missense_Mutation	SNP	G	G	C	rs182735973	by1000genomes;alternate_allele	TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	161221335	G	C	161221335	3	2	473	1	0	0	0	0	1	0	0	0	11311	1087	38	4	1053	4	OTOL1	3	161221335	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	20819410	161221335	36801095	16	27801											
MUC4	4585	broad.mit.edu	37	3	195509498	195509498	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	195509498	T	T	195509498	3	4	473	1	0	0	0	0	1	0	0	0	9985	797	28	2		2	MUC4	3	195509498	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	34288163	195509498	2512932	17	27802											
MUC4	4585	hgsc.bcm.edu	37	3	195515414	195515414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	195515414	T	C	195515414	3	2	473	1	0	0	0	0	1	0	0	0	9985	1580	55	3		3	MUC4	3	195515414	Missense_Mutation	SNP	T	TCGA-CJ-4639-01A-02D-1386-10	5916	195515414	2507016	18	27803											
LAP3	51056	hgsc.bcm.edu	37	4	17579091	17579091	+	Missense_Mutation	SNP	G	G	A	rs139709924	alternate_allele	TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	17579091	G	A	17579091	3	1	473	1	0	0	0	0	1	0	0	0	8630	1377	48	2	5	2	LAP3	4	17579091	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10		17579091	173575185	19	27804											
PTPN13	5783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87662970	87662970	+	Splice_Site	SNP	G	G	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	87662970	G	T	87662970	5	4	473	1	0	0	0	0	0	0	1	0	12793	1391	48	4	2546	4	PTPN13	4	87662970	Splice_Site	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	70083879	87662970	103491306	20	27805											
PDLIM5	10611	hgsc.bcm.edu;ucsc.edu	37	4	95503859	95503859	+	RNA	SNP	T	T	G	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	95503859	T	G	95503859	1	3	473	0	1	0	0	0	0	0	0	0	11690	1624	56	5		5	PDLIM5	4	95503859	RNA	SNP	T	TCGA-CJ-4639-01A-02D-1386-10	7840889	95503859	95650417	21	27806											
KIAA1109	84162	hgsc.bcm.edu;ucsc.edu	37	4	123265686	123265686	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	-	123265686	A	-	123265686	7	5	473	1	0	1	0	1	0	0	0	0	8215	131	5	0	12989	0	KIAA1109	4	123265686	Frame_Shift_Del	DEL	A	TCGA-CJ-4639-01A-02D-1386-10	27761827	123265686	67888590	22	27807											
HHIP	64399	broad.mit.edu;hgsc.bcm.edu	37	4	145655993	145655993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	145655993	G	A	145655993	3	1	473	1	0	0	0	0	1	0	0	0	7099	1233	43	2	1907	2	HHIP	4	145655993	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	22390307	145655993	45498283	23	27808											
TMEM144	55314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	159138498	159138499	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	159138499	-	A	159138498	7	5	473	1	0	1	1	0	0	0	0	0	16070	816	29	0	268	0	TMEM144	4	159138498	Frame_Shift_Ins	INS	-	TCGA-CJ-4639-01A-02D-1386-10	13482505	159138498	32015778	24	27809											
SNX18	112574	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	53815390	53815390	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	53815390	C	T	53815390	2	4	473	1	0	0	0	0	0	0	0	1	14902	845	30	2		2	SNX18	5	53815390	Silent	SNP	C	TCGA-CJ-4639-01A-02D-1386-10		53815390	127099870	25	27810											
CENPH	64946	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	68505612	68505612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	68505612	G	T	68505612	3	4	473	1	0	0	0	0	1	0	0	0	3234	1377	48	4	764	4	CENPH	5	68505612	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	14690222	68505612	112409648	26	27811											
MAP1B	4131	hgsc.bcm.edu;ucsc.edu	37	5	71489932	71489932	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	-	71489932	A	-	71489932	7	5	473	1	0	1	0	1	0	0	0	0	9235	204	8	0	768	0	MAP1B	5	71489932	Frame_Shift_Del	DEL	A	TCGA-CJ-4639-01A-02D-1386-10	2984320	71489932	109425328	27	27812											
SPOCK1	6695	broad.mit.edu;hgsc.bcm.edu	37	5	136448175	136448175	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	136448175	C	A	136448175	2	1	473	1	0	0	0	0	0	0	0	1	15091	581	21	4		4	SPOCK1	5	136448175	Silent	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	64958243	136448175	44467085	28	27813											
SLC17A2	10246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	25913557	25913557	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	25913557	A	C	25913557	4	2	473	1	0	0	0	0	0	1	0	0	14430	372	13	5	37	5	SLC17A2	6	25913557	Nonsense_Mutation	SNP	A	TCGA-CJ-4639-01A-02D-1386-10		25913557	145201510	29	27814											
MUC17	140453	broad.mit.edu;hgsc.bcm.edu	37	7	100696341	100696341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	100696341	G	A	100696341	3	1	473	1	0	0	0	0	1	0	0	0	9981	1203	42	2	13216	2	MUC17	7	100696341	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10		100696341	58442322	30	27815											
MFHAS1	9258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	8748320	8748320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	8748320	T	C	8748320	3	2	473	1	0	0	0	0	1	0	0	0	9528	1464	51	3	921	3	MFHAS1	8	8748320	Missense_Mutation	SNP	T	TCGA-CJ-4639-01A-02D-1386-10		8748320	137615702	31	27816											
RBM12B	389677	broad.mit.edu;hgsc.bcm.edu	37	8	94746348	94746348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	94746348	C	A	94746348	3	1	473	1	0	0	0	0	1	0	0	0	13127	681	24	4	718	4	RBM12B	8	94746348	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	85998028	94746348	51617674	32	27817											
PFKFB3	5209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	6257233	6257233	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	6257233	C	T	6257233	2	4	473	1	0	0	0	0	0	0	0	1	11769	668	24	2		2	PFKFB3	10	6257233	Silent	SNP	C	TCGA-CJ-4639-01A-02D-1386-10		6257233	129277514	33	27818											
STAM	8027	hgsc.bcm.edu;ucsc.edu	37	10	17737083	17737085	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	-	17737085	TCA	-	17737083	7	5	473	1	0	1	0	1	0	0	0	0	15260	1667	58	0	597	0	STAM	10	17737083	In_Frame_Del	DEL	TCA	TCGA-CJ-4639-01A-02D-1386-10	11479850	17737083	117797664	34	27819											
SEMA4G	57715	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	102740600	102740600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	102740600	C	T	102740600	3	4	473	1	0	0	0	0	1	0	0	0	14049	855	30	2	1535	2	SEMA4G	10	102740600	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	85003517	102740600	32794147	35	27820											
ARFIP2	23647	broad.mit.edu;hgsc.bcm.edu	37	11	6499971	6499971	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	6499971	A	T	6499971	2	4	473	1	0	0	0	0	0	0	0	1	855	233	9	5		5	ARFIP2	11	6499971	Silent	SNP	A	TCGA-CJ-4639-01A-02D-1386-10		6499971	128506545	36	27821											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108106450	108106450	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	108106450	A	T	108106450	4	4	473	1	0	0	0	0	0	1	0	0	1109	247	9	5	399	5	ATM	11	108106450	Nonsense_Mutation	SNP	A	TCGA-CJ-4639-01A-02D-1386-10	101606479	108106450	26900066	37	27822											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108216609	108216609	+	Missense_Mutation	SNP	C	C	G	rs141534716	alternate_allele	TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	108216609	C	G	108216609	3	3	473	1	0	0	0	0	1	0	0	0	1109	536	19	4	8784	4	ATM	11	108216609	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	110159	108216609	26789907	38	27823											
TMPRSS13	84000	broad.mit.edu;ucsc.edu	37	11	117774795	117774795	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	117774795	G	G	117774795	3	3	473	1	0	0	0	0	1	0	0	0	16257	652	23	4	312	4	TMPRSS13	11	117774795	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	9558186	117774795	17231721	39	27824											
VDR	7421	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48272814	48272814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	48272814	C	G	48272814	3	3	473	1	0	0	0	0	1	0	0	0	17161	855	30	4	1232	4	VDR	12	48272814	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10		48272814	85579081	40	27825											
FIGNL2	401720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52216199	52216199	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	52216199	T	G	52216199	2	3	473	1	0	0	0	0	0	0	0	1	5900	1624	56	5		5	FIGNL2	12	52216199	Silent	SNP	T	TCGA-CJ-4639-01A-02D-1386-10	3943385	52216199	81635696	41	27826											
MMP17	4326	broad.mit.edu;hgsc.bcm.edu	37	12	132329961	132329961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	132329961	C	T	132329961	3	4	473	1	0	0	0	0	1	0	0	0	9663	768	27	1	1201	1	MMP17	12	132329961	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	80113762	132329961	1521934	42	27827											
ZFP106	64397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42744055	42744055	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	42744055	T	A	42744055	3	1	473	1	0	0	0	0	1	0	0	0	17649	1551	54	5	5377	5	ZFP106	15	42744055	Missense_Mutation	SNP	T	TCGA-CJ-4639-01A-02D-1386-10		42744055	59787337	43	27828											
ADCY9	115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4033433	4033433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	4033433	C	A	4033433	3	1	473	1	0	0	0	0	1	0	0	0	301	912	32	4	1762	4	ADCY9	16	4033433	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10		4033433	86321320	44	27829											
STX4	6810	hgsc.bcm.edu;ucsc.edu	37	16	31049919	31049919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	31049919	G	A	31049919	3	1	473	1	0	0	0	0	1	0	0	0	15359	1145	40	1	683	1	STX4	16	31049919	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	27016486	31049919	59304834	45	27830											
RBL2	5934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	53487478	53487478	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	53487478	A	C	53487478	3	2	473	1	0	0	0	0	1	0	0	0	13123	72	3	5	903	5	RBL2	16	53487478	Missense_Mutation	SNP	A	TCGA-CJ-4639-01A-02D-1386-10	22437559	53487478	36867275	46	27831											
GOT2	2806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58749998	58749998	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	58749998	A	C	58749998	2	2	473	1	0	0	0	0	0	0	0	1	6588	262	10	5		5	GOT2	16	58749998	Silent	SNP	A	TCGA-CJ-4639-01A-02D-1386-10	5262520	58749998	31604755	47	27832											
MFSD6L	162387	broad.mit.edu;hgsc.bcm.edu	37	17	8702333	8702333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	8702333	G	A	8702333	3	1	473	1	0	0	0	0	1	0	0	0	9543	1000	35	2	1658	2	MFSD6L	17	8702333	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10		8702333	72492877	48	27833											
ATAD5	79915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29196281	29196281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	29196281	T	C	29196281	3	2	473	1	0	0	0	0	1	0	0	0	1076	1406	49	3	3379	3	ATAD5	17	29196281	Missense_Mutation	SNP	T	TCGA-CJ-4639-01A-02D-1386-10	20493948	29196281	51998929	49	27834											
KIAA1267	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	44248335	44248335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	44248335	C	G	44248335	3	3	473	1	0	0	0	0	1	0	0	0	8226	681	24	4	2198	4	KIAA1267	17	44248335	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	15052054	44248335	36946875	50	27835											
AKAP1	8165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	55184285	55184285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	55184285	G	A	55184285	3	1	473	1	0	0	0	0	1	0	0	0	445	1377	48	2	1462	2	AKAP1	17	55184285	Missense_Mutation	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	10935950	55184285	26010925	51	27836											
POLG2	11232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62492539	62492539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	62492539	T	A	62492539	3	1	473	1	0	0	0	0	1	0	0	0	12208	1551	54	5	941	5	POLG2	17	62492539	Missense_Mutation	SNP	T	TCGA-CJ-4639-01A-02D-1386-10	7308254	62492539	18702671	52	27837											
ZACN	353174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74076506	74076506	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	74076506	G	A	74076506	5	1	473	1	0	0	0	0	0	0	1	0	17522	1275	44	2	563	2	ZACN	17	74076506	Splice_Site	SNP	G	TCGA-CJ-4639-01A-02D-1386-10	11583967	74076506	7118704	53	27838											
NFATC1	4772	broad.mit.edu;hgsc.bcm.edu	37	18	77170523	77170523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	T	77170523	C	T	77170523	3	4	473	1	0	0	0	0	1	0	0	0	10368	768	27	1	346	1	NFATC1	18	77170523	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10		77170523	906725	54	27839											
APLP1	333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36362632	36362632	+	Missense_Mutation	SNP	C	C	A	rs142658251		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	36362632	C	A	36362632	3	1	473	1	0	0	0	0	1	0	0	0	778	913	32	4	674	4	APLP1	19	36362632	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10		36362632	22766351	55	27840											
GSK3A	2931	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42736808	42736808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	42736808	C	A	42736808	3	1	473	1	0	0	0	0	1	0	0	0	6830	680	24	4	338	4	GSK3A	19	42736808	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	6374176	42736808	16392175	56	27841											
KLC3	147700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45854226	45854226	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	45854226	T	G	45854226	3	3	473	1	0	0	0	0	1	0	0	0	8342	1464	51	5	1436	5	KLC3	19	45854226	Missense_Mutation	SNP	T	TCGA-CJ-4639-01A-02D-1386-10	3117418	45854226	13274757	57	27842											
NLRP4	147945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56369989	56369989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	56369989	C	A	56369989	3	1	473	1	0	0	0	0	1	0	0	0	10486	477	17	4	1236	4	NLRP4	19	56369989	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	10515763	56369989	2758994	58	27843											
TAF4	6874	hgsc.bcm.edu;ucsc.edu	37	20	60574076	60574077	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	60574077	-	C	60574076	7	5	473	1	0	1	1	0	0	0	0	0	15538	1435	50	0	397	0	TAF4	20	60574076	Frame_Shift_Ins	INS	-	TCGA-CJ-4639-01A-02D-1386-10		60574076	2451444	59	27844											
SLC2A11	66035	hgsc.bcm.edu;ucsc.edu	37	22	24226035	24226036	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	C	24226036	-	C	24226035	7	5	473	1	0	1	1	0	0	0	0	0	14553	1435	50	0	1175	0	SLC2A11	22	24226035	Frame_Shift_Ins	INS	-	TCGA-CJ-4639-01A-02D-1386-10		24226035	27078531	60	27845											
TBL1X	6907	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	9677737	9677737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	9677737	C	A	9677737	3	1	473	1	0	0	0	0	1	0	0	0	15651	507	18	4	1422	4	TBL1X	23	9677737	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10		9677737	145592823	61	27846											
XK	7504	broad.mit.edu;hgsc.bcm.edu	37	X	37586901	37586901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	37586901	C	A	37586901	3	1	473	1	0	0	0	0	1	0	0	0	17443	507	18	4	531	4	XK	23	37586901	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	27909164	37586901	117683659	62	27847											
IL13RA1	3597	hgsc.bcm.edu;ucsc.edu	37	X	117900881	117900882	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	AA	117900882	-	AA	117900881	7	5	473	1	0	1	1	0	0	0	0	0	7636	1403	49	0	981	0	IL13RA1	23	117900881	Frame_Shift_Ins	INS	-	TCGA-CJ-4639-01A-02D-1386-10	80313980	117900881	37369679	63	27848											
ACTRT1	139741	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	127185839	127185839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	A	127185839	C	A	127185839	3	1	473	1	0	0	0	0	1	0	0	0	218	681	24	4	787	4	ACTRT1	23	127185839	Missense_Mutation	SNP	C	TCGA-CJ-4639-01A-02D-1386-10	9284958	127185839	28084721	64	27849											
AIFM1	9131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129290574	129290574	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4639-01A-02D-1386-10	TCGA-CJ-4639-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6d1b1-5a09-4082-8ec0-61b12b3c8801	bb11b4d9-1656-4dd8-9916-c2a717201dc2	G	129290574	T	G	129290574	3	3	473	1	0	0	0	0	1	0	0	0	426	1725	60	5	1938	5	AIFM1	23	129290574	Missense_Mutation	SNP	T	TCGA-CJ-4639-01A-02D-1386-10	2104735	129290574	25979986	65	27850											
TMEM222	84065	broad.mit.edu;hgsc.bcm.edu	37	1	27648817	27648817	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	27648817	C	T	27648817	2	4	474	1	0	0	0	0	0	0	0	1	16157	871	31	1		1	TMEM222	1	27648817	Silent	SNP	C	TCGA-CJ-4640-01A-02D-1386-10		27648817	221601804	1	27851											
LASS2	0	broad.mit.edu;hgsc.bcm.edu	37	1	150939613	150939613	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	150939613	G	T	150939613	2	4	474	1	0	0	0	0	0	0	0	1	8646	1335	47	4		4	LASS2	1	150939613	Silent	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	123290796	150939613	98311008	2	27852											
GPR52	9293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	174418158	174418158	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	174418158	C	A	174418158	2	1	474	1	0	0	0	0	0	0	0	1	6705	668	24	4		4	GPR52	1	174418158	Silent	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	23478545	174418158	74832463	3	27853											
B3GALNT2	148789	broad.mit.edu;ucsc.edu	37	1	235618936	235618936	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	235618936	T	T	235618936	3	4	474	1	0	0	0	0	1	0	0	0	1246	1252	44	4	432	4	B3GALNT2	1	235618936	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	61200778	235618936	13631685	4	27854											
LYST	1130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	235918888	235918889	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	235918889	-	T	235918888	7	5	474	1	0	1	1	0	0	0	0	0	9135	330	12	0	4402	0	LYST	1	235918888	Frame_Shift_Ins	INS	-	TCGA-CJ-4640-01A-02D-1386-10	299952	235918888	13331733	5	27855											
CCDC75	253635	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	37321281	37321281	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	G	37321281	A	G	37321281	2	3	474	1	0	0	0	0	0	0	0	1	2851	69	3	3		3	CCDC75	2	37321281	Silent	SNP	A	TCGA-CJ-4640-01A-02D-1386-10		37321281	205878092	6	27856											
DNAH6	1768	broad.mit.edu;ucsc.edu	37	2	84945368	84945368	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	G	84945368	G	G	84945368	3	3	474	1	0	0	0	0	1	0	0	0	4607	64	3	3	9882	3	DNAH6	2	84945368	Missense_Mutation	SNP	A	TCGA-CJ-4640-01A-02D-1386-10	47624087	84945368	158254005	7	27857											
DPP10	57628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	116594279	116594279	+	Silent	SNP	C	C	A	rs138029087	alternate_allele	TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	116594279	C	A	116594279	2	1	474	1	0	0	0	0	0	0	0	1	4729	784	28	4		4	DPP10	2	116594279	Silent	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	31648911	116594279	126605094	8	27858											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170027130	170027130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	G	170027130	A	G	170027130	3	3	474	1	0	0	0	0	1	0	0	0	8963	159	6	3	2740	3	LRP2	2	170027130	Missense_Mutation	SNP	A	TCGA-CJ-4640-01A-02D-1386-10	53432851	170027130	73172243	9	27859											
DNAH7	56171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	196737119	196737119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	196737119	G	T	196737119	3	4	474	1	0	0	0	0	1	0	0	0	4608	1319	46	4	5690	4	DNAH7	2	196737119	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	26709989	196737119	46462254	10	27860	344	2									
DNAH7	56171	broad.mit.edu;ucsc.edu	37	2	196737120	196737120	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	196737120	T	T	196737120	3	4	474	1	0	0	0	0	1	0	0	0	4608	797	28	2	5691	2	DNAH7	2	196737120	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	1	196737120	46462253	11	27861	344	2									
NIF3L1	60491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	201768224	201768224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	201768224	G	T	201768224	3	4	474	1	0	0	0	0	1	0	0	0	10423	1377	48	4	979	4	NIF3L1	2	201768224	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	5031104	201768224	41431149	12	27862											
TMPPE	643853	broad.mit.edu	37	3	33135687	33135687	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	-	33135687	-	-	33135687	7	5	474	1	0	1	0	1	0	0	0	0	16250	1493	52	0	1364	0	TMPPE	3	33135687	Frame_Shift_Del	DEL	T	TCGA-CJ-4640-01A-02D-1386-10		33135687	164886743	13	27863											
CBLB	868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	105389115	105389115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	105389115	C	A	105389115	3	1	474	1	0	0	0	0	1	0	0	0	2703	913	32	4	305	4	CBLB	3	105389115	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	72253428	105389115	92633315	14	27864											
MUC4	4585	hgsc.bcm.edu	37	3	195508298	195508298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	195508298	C	A	195508298	3	1	474	1	0	0	0	0	1	0	0	0	9985	739	26	4		4	MUC4	3	195508298	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	90119183	195508298	2514132	15	27865	345	2									
MUC4	4585	hgsc.bcm.edu	37	3	195508299	195508299	+	Silent	SNP	C	C	T	rs2453135	bycluster	TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	195508299	C	T	195508299	2	4	474	1	0	0	0	0	0	0	0	1	9985	639	23	1		1	MUC4	3	195508299	Silent	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	1	195508299	2514131	16	27866	345	2									
ANK2	287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	114286249	114286249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	114286249	T	A	114286249	3	1	474	1	0	0	0	0	1	0	0	0	621	1551	54	5	11170	5	ANK2	4	114286249	Missense_Mutation	SNP	T	TCGA-CJ-4640-01A-02D-1386-10		114286249	76868027	17	27867											
IQGAP2	10788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	75896708	75896708	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	G	75896708	C	G	75896708	2	3	474	1	0	0	0	0	0	0	0	1	7822	668	24	4		4	IQGAP2	5	75896708	Silent	SNP	C	TCGA-CJ-4640-01A-02D-1386-10		75896708	105018552	18	27868											
LRFN2	57497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	40400231	40400231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	40400231	G	A	40400231	3	1	474	1	0	0	0	0	1	0	0	0	8945	1057	37	1	1755	1	LRFN2	6	40400231	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10		40400231	130714836	19	27869											
SRRT	51593	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100483954	100483954	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	C	100483954	G	C	100483954	3	2	474	1	0	0	0	0	1	0	0	0	15184	933	33	4	1591	4	SRRT	7	100483954	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10		100483954	58654709	20	27870											
ADAM28	10863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	24170950	24170950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	24170950	C	T	24170950	3	4	474	1	0	0	0	0	1	0	0	0	246	623	22	2	455	2	ADAM28	8	24170950	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10		24170950	122193072	21	27871											
TTC18	118491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75095189	75095189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	C	75095189	T	C	75095189	3	2	474	1	0	0	0	0	1	0	0	0	16697	1594	55	3	2563	3	TTC18	10	75095189	Missense_Mutation	SNP	T	TCGA-CJ-4640-01A-02D-1386-10		75095189	60439558	22	27872											
RRP12	23223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99125881	99125881	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	C	99125881	T	C	99125881	2	2	474	1	0	0	0	0	0	0	0	1	13699	1606	56	3		3	RRP12	10	99125881	Silent	SNP	T	TCGA-CJ-4640-01A-02D-1386-10	24030692	99125881	36408866	23	27873											
CRTAC1	55118	broad.mit.edu;ucsc.edu	37	10	99664546	99664546	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	99664546	T	T	99664546	2	4	474	1	0	0	0	0	0	0	0	1	3898	726	26	2		2	CRTAC1	10	99664546	Silent	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	538665	99664546	35870201	24	27874											
CNNM2	54805	broad.mit.edu	37	10	104678907	104678909	+	In_Frame_Del	DEL	CCG	-	-	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	CCG	CCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	-	104678909	-	-	104678907	7	5	474	1	0	1	0	1	0	0	0	0	3615	623	22	0	672	0	CNNM2	10	104678907	In_Frame_Del	DEL	CCG	TCGA-CJ-4640-01A-02D-1386-10	5014361	104678907	30855840	25	27875											
NAP1L4	4676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	2992733	2992733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	2992733	G	A	2992733	3	1	474	1	0	0	0	0	1	0	0	0	10166	1348	47	2	820	2	NAP1L4	11	2992733	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10		2992733	132013783	26	27876											
DNHD1	144132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6566997	6566997	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	C	6566997	G	C	6566997	3	2	474	1	0	0	0	0	1	0	0	0	4670	1232	43	4	4911	4	DNHD1	11	6566997	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	3574264	6566997	128439519	27	27877											
LRP4	4038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	46894661	46894661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	G	46894661	C	G	46894661	3	3	474	1	0	0	0	0	1	0	0	0	8966	826	29	4	1180	4	LRP4	11	46894661	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	40327664	46894661	88111855	28	27878											
NPAS4	266743	broad.mit.edu	37	11	66192144	66192144	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	66192144	T	T	66192144	3	4	474	1	0	0	0	0	1	0	0	0	10572	643	23	1	1809	1	NPAS4	11	66192144	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	19297483	66192144	68814372	29	27879											
NOP2	4839	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6672820	6672820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	6672820	C	A	6672820	3	1	474	1	0	0	0	0	1	0	0	0	10545	680	24	4	1830	4	NOP2	12	6672820	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10		6672820	127179075	30	27880											
GNPTAB	79158	hgsc.bcm.edu;ucsc.edu	37	12	102151009	102151009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	102151009	C	T	102151009	3	4	474	1	0	0	0	0	1	0	0	0	6552	826	29	2	371	2	GNPTAB	12	102151009	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	95478189	102151009	31700886	31	27881											
ZCCHC8	55596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	122967187	122967187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	122967187	G	A	122967187	3	1	474	1	0	0	0	0	1	0	0	0	17606	1232	43	2	1424	2	ZCCHC8	12	122967187	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	20816178	122967187	10884708	32	27882											
C13orf15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	42042974	42042974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	G	42042974	A	G	42042974	3	3	474	1	0	0	0	0	1	0	0	0	1720	86	3	3	420	3	C13orf15	13	42042974	Missense_Mutation	SNP	A	TCGA-CJ-4640-01A-02D-1386-10		42042974	73126904	33	27883											
PELI2	57161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	56757030	56757030	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	56757030	G	T	56757030	2	4	474	1	0	0	0	0	0	0	0	1	11729	1190	42	4		4	PELI2	14	56757030	Silent	SNP	G	TCGA-CJ-4640-01A-02D-1386-10		56757030	50592510	34	27884											
DAAM1	23002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	59834241	59834241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	59834241	C	T	59834241	3	4	474	1	0	0	0	0	1	0	0	0	4217	838	29	2	3045	2	DAAM1	14	59834241	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	3077211	59834241	47515299	35	27885											
PAPLN	89932	broad.mit.edu	37	14	73721593	73721593	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	C	73721593	C	C	73721593	3	2	474	1	0	0	0	0	1	0	0	0	11435	933	33	4	1459	4	PAPLN	14	73721593	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	13887352	73721593	33627947	36	27886											
SNX33	257364	broad.mit.edu;ucsc.edu	37	15	75942381	75942381	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	75942381	T	T	75942381	3	4	474	1	0	0	0	0	1	0	0	0	14916	1357	47	4	940	4	SNX33	15	75942381	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10		75942381	26589011	37	27887											
UMOD	7369	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	20355352	20355352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	G	20355352	A	G	20355352	3	3	474	1	0	0	0	0	1	0	0	0	16991	217	8	3	621	3	UMOD	16	20355352	Missense_Mutation	SNP	A	TCGA-CJ-4640-01A-02D-1386-10		20355352	69999401	38	27888											
RNF40	9810	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30776560	30776560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	30776560	C	T	30776560	3	4	474	1	0	0	0	0	1	0	0	0	13506	478	17	2	852	2	RNF40	16	30776560	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	10421208	30776560	59578193	39	27889											
SHMT1	6470	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18243556	18243556	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	18243556	G	T	18243556	4	4	474	1	0	0	0	0	0	1	0	0	14298	1024	36	4	860	4	SHMT1	17	18243556	Nonsense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10		18243556	62951654	40	27890											
RPL19	6143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37357533	37357533	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	C	37357533	G	C	37357533	3	2	474	1	0	0	0	0	1	0	0	0	13579	942	33	4	79	4	RPL19	17	37357533	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	19113977	37357533	43837677	41	27891											
TRIM25	7706	broad.mit.edu;ucsc.edu	37	17	54981679	54981679	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	C	54981679	C	C	54981679	3	2	474	1	0	0	0	0	1	0	0	0	16511	1164	41	4	1056	4	TRIM25	17	54981679	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	17624146	54981679	26213531	42	27892											
DSC2	1824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	28651750	28651750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	28651750	G	A	28651750	3	1	474	1	0	0	0	0	1	0	0	0	4768	1000	35	2	815	2	DSC2	18	28651750	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10		28651750	49425498	43	27893											
DSG1	1828	broad.mit.edu;ucsc.edu	37	18	28908167	28908167	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	28908167	T	T	28908167	3	4	474	1	0	0	0	0	1	0	0	0	4778	1319	46	4	246	4	DSG1	18	28908167	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	256417	28908167	49169081	44	27894											
CALR	811	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	13051666	13051666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	13051666	G	T	13051666	3	4	474	1	0	0	0	0	1	0	0	0	2594	1290	45	4	951	4	CALR	19	13051666	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10		13051666	46077317	45	27895											
JAK3	3718	broad.mit.edu;ucsc.edu	37	19	17954627	17954627	+	Silent	SNP	G	T	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	17954627	T	T	17954627	2	4	474	1	0	0	0	0	0	0	0	1	7946	1103	39	4		4	JAK3	19	17954627	Silent	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	4902961	17954627	41174356	46	27896											
ZNF714	148206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	21299645	21299645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	21299645	C	A	21299645	3	1	474	1	0	0	0	0	1	0	0	0	18130	739	26	4	185	4	ZNF714	19	21299645	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	3345018	21299645	37829338	47	27897											
IL28A	0	broad.mit.edu	37	19	39759493	39759493	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	39759493	T	T	39759493	3	4	474	1	0	0	0	0	1	0	0	0	7689	1319	46	4	193	4	IL28A	19	39759493	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	18459848	39759493	19369490	48	27898											
NAPSA	9476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50862276	50862276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	50862276	C	T	50862276	3	4	474	1	0	0	0	0	1	0	0	0	10173	536	19	1	243	1	NAPSA	19	50862276	Missense_Mutation	SNP	C	TCGA-CJ-4640-01A-02D-1386-10	11102783	50862276	8266707	49	27899											
SIGLEC8	27181	broad.mit.edu;ucsc.edu	37	19	51961425	51961425	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	51961425	T	T	51961425	3	4	474	1	0	0	0	0	1	0	0	0	14327	1261	44	4	1310	4	SIGLEC8	19	51961425	Missense_Mutation	SNP	G	TCGA-CJ-4640-01A-02D-1386-10	1099149	51961425	7167558	50	27900											
ZNF132	7691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58945135	58945135	+	Missense_Mutation	SNP	A	A	T	rs185952330	by1000genomes;alternate_allele	TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	T	58945135	A	T	58945135	3	4	474	1	0	0	0	0	1	0	0	0	17734	101	4	5	448	5	ZNF132	19	58945135	Missense_Mutation	SNP	A	TCGA-CJ-4640-01A-02D-1386-10	6983710	58945135	183848	51	27901											
DIDO1	11083	hgsc.bcm.edu	37	20	61513427	61513438	+	In_Frame_Del	DEL	GCTGCTGTTGTG	GCTGCTGTTGTG	-	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	GCTGCTGTTGTG	GCTGCTGTTGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	-	61513438	GCTGCTGTTGTG	-	61513427	7	5	474	1	0	1	0	1	0	0	0	0	4524	1087	38	0	2845	0	DIDO1	20	61513427	In_Frame_Del	DEL	GCTGCTGTTGTG	TCGA-CJ-4640-01A-02D-1386-10		61513427	1512093	52	27902											
ENTHD1	150350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	40231926	40231926	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	A	40231926	G	A	40231926	2	1	474	1	0	0	0	0	0	0	0	1	5139	1195	42	2		2	ENTHD1	22	40231926	Silent	SNP	G	TCGA-CJ-4640-01A-02D-1386-10		40231926	11072640	53	27903											
KLHL34	257240	broad.mit.edu	37	X	21674384	21674384	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-CJ-4640-01A-02D-1386-10	TCGA-CJ-4640-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e406036a-eecb-474e-8c76-0fa8b64225be	60836f30-bbab-459c-8b8d-a12902fbcf4e	-	21674384	-	-	21674384	7	5	474	1	0	1	0	1	0	0	0	0	8394	1609	56	0	415	0	KLHL34	23	21674384	Frame_Shift_Del	DEL	T	TCGA-CJ-4640-01A-02D-1386-10		21674384	133596176	54	27904											
TMCO2	127391	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40713786	40713786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	40713786	T	A	40713786	3	1	475	1	0	0	0	0	1	0	0	0	16008	1838	64	5	123	5	TMCO2	1	40713786	Missense_Mutation	SNP	T	TCGA-CJ-4641-01A-02D-1386-10		40713786	208536835	1	27905											
MAST2	23139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46497886	46497886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	46497886	C	T	46497886	3	4	475	1	0	0	0	0	1	0	0	0	9332	855	30	2	3322	2	MAST2	1	46497886	Missense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	5784100	46497886	202752735	2	27906											
FLG	2312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152279668	152279668	+	Missense_Mutation	SNP	G	G	T	rs182787187	by1000genomes;alternate_allele	TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	152279668	G	T	152279668	3	4	475	1	0	0	0	0	1	0	0	0	5929	1174	41	4	4495	4	FLG	1	152279668	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	105781782	152279668	96970953	3	27907											
SPTA1	6708	broad.mit.edu;ucsc.edu	37	1	158609798	158609798	+	Splice_Site	SNP	C	G	G	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	G	158609798	G	G	158609798	5	3	475	1	0	0	0	0	0	0	1	0	15128	695	24	4	2598	4	SPTA1	1	158609798	Splice_Site	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	6330130	158609798	90640823	4	27908											
PIGR	5284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	207110826	207110826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	207110826	C	A	207110826	3	1	475	1	0	0	0	0	1	0	0	0	11904	710	25	4	1667	4	PIGR	1	207110826	Missense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	48501028	207110826	42139795	5	27909											
CR1	1378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	207758216	207758216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	207758216	G	A	207758216	3	1	475	1	0	0	0	0	1	0	0	0	3842	1145	40	1	5655	1	CR1	1	207758216	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	647390	207758216	41492405	6	27910											
PLB1	151056	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	28752601	28752601	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	28752601	G	A	28752601	2	1	475	1	0	0	0	0	0	0	0	1	12031	1368	48	2		2	PLB1	2	28752601	Silent	SNP	G	TCGA-CJ-4641-01A-02D-1386-10		28752601	214446772	7	27911											
XPO1	7514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61749804	61749804	+	Missense_Mutation	SNP	T	T	A	rs76607520	alternate_allele	TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	61749804	T	A	61749804	3	1	475	1	0	0	0	0	1	0	0	0	17457	1838	64	5	3060	5	XPO1	2	61749804	Missense_Mutation	SNP	T	TCGA-CJ-4641-01A-02D-1386-10	32997203	61749804	181449569	8	27912											
DPP10	57628	hgsc.bcm.edu;ucsc.edu	37	2	116101463	116101463	+	Missense_Mutation	SNP	C	C	G	rs143448690	alternate_allele	TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	G	116101463	C	G	116101463	3	3	475	1	0	0	0	0	1	0	0	0	4729	535	19	4	427	4	DPP10	2	116101463	Missense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	54351659	116101463	127097910	9	27913											
DNAH7	56171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	196620981	196620981	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	G	196620981	T	G	196620981	3	3	475	1	0	0	0	0	1	0	0	0	4608	1783	62	5	628	5	DNAH7	2	196620981	Missense_Mutation	SNP	T	TCGA-CJ-4641-01A-02D-1386-10	80519518	196620981	46578392	10	27914											
TMEM111	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10005828	10005828	+	Silent	SNP	G	G	A	rs113658691	by1000genomes	TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	10005828	G	A	10005828	2	1	475	1	0	0	0	0	0	0	0	1	16040	1045	37	1		1	TMEM111	3	10005828	Silent	SNP	G	TCGA-CJ-4641-01A-02D-1386-10		10005828	188016602	11	27915											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52441304	52441304	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	52441304	G	A	52441304	4	1	475	1	0	0	0	0	0	1	0	0	1311	1328	46	2	1767	2	BAP1	3	52441304	Nonsense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	42435476	52441304	145581126	12	27916											
MUC4	4585	broad.mit.edu	37	3	195507051	195507051	+	Silent	SNP	T	C	C	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	C	195507051	C	C	195507051	2	2	475	1	0	0	0	0	0	0	0	1	9985	1567	55	3		3	MUC4	3	195507051	Silent	SNP	T	TCGA-CJ-4641-01A-02D-1386-10	143065747	195507051	2515379	13	27917											
FAT1	2195	broad.mit.edu	37	4	187521052	187521052	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	187521052	T	T	187521052	3	4	475	1	0	0	0	0	1	0	0	0	5696	695	24	2	1687	2	FAT1	4	187521052	Missense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10		187521052	3633224	14	27918											
PCDHA8	56140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140221437	140221437	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	140221437	C	T	140221437	2	4	475	1	0	0	0	0	0	0	0	1	11537	576	20	2		2	PCDHA8	5	140221437	Silent	SNP	C	TCGA-CJ-4641-01A-02D-1386-10		140221437	40693823	15	27919											
PCDHGA7	56108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140764005	140764005	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	140764005	C	T	140764005	2	4	475	1	0	0	0	0	0	0	0	1	11566	842	30	2		2	PCDHGA7	5	140764005	Silent	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	542568	140764005	40151255	16	27920											
C5orf4	10826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	154200918	154200918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	154200918	C	T	154200918	3	4	475	1	0	0	0	0	1	0	0	0	2300	478	17	2	262	2	C5orf4	5	154200918	Missense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	13436913	154200918	26714342	17	27921											
OR5V1	81696	broad.mit.edu	37	6	29323659	29323659	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	G	29323659	G	G	29323659	3	3	475	1	0	0	0	0	1	0	0	0	11191	43	2	3	654	3	OR5V1	6	29323659	Missense_Mutation	SNP	A	TCGA-CJ-4641-01A-02D-1386-10		29323659	141791408	18	27922											
KCNQ5	56479	broad.mit.edu;ucsc.edu	37	6	73904280	73904280	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	73904280	A	A	73904280	3	1	475	1	0	0	0	0	1	0	0	0	8093	507	18	4	2057	4	KCNQ5	6	73904280	Missense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	44580621	73904280	97210787	19	27923	346	2									
KCNQ5	56479	broad.mit.edu	37	6	73904281	73904281	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	73904281	T	T	73904281	3	4	475	1	0	0	0	0	1	0	0	0	8093	681	24	2	2058	2	KCNQ5	6	73904281	Missense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	1	73904281	97210786	20	27924	346	2									
NFE2L3	9603	broad.mit.edu;hgsc.bcm.edu	37	7	26225394	26225394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	26225394	G	T	26225394	3	4	475	1	0	0	0	0	1	0	0	0	10376	933	33	4	2090	4	NFE2L3	7	26225394	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10		26225394	132913269	21	27925											
ZNF735	730291	broad.mit.edu;hgsc.bcm.edu	37	7	63680408	63680408	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	63680408	T	A	63680408	3	1	475	1	0	0	0	0	1	0	0	0	18136	1464	51	5	993	5	ZNF735	7	63680408	Missense_Mutation	SNP	T	TCGA-CJ-4641-01A-02D-1386-10	37455014	63680408	95458255	22	27926											
CALD1	800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134618353	134618353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	134618353	A	T	134618353	3	4	475	1	0	0	0	0	1	0	0	0	2583	246	9	5	900	5	CALD1	7	134618353	Missense_Mutation	SNP	A	TCGA-CJ-4641-01A-02D-1386-10	70937945	134618353	24520310	23	27927											
HOOK3	84376	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	42821725	42821725	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	42821725	C	T	42821725	4	4	475	1	0	0	0	0	0	1	0	0	7291	827	29	2	927	2	HOOK3	8	42821725	Nonsense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10		42821725	103542297	24	27928											
MCM4	4173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	48889311	48889311	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	48889311	G	T	48889311	2	4	475	1	0	0	0	0	0	0	0	1	9396	1277	45	4		4	MCM4	8	48889311	Silent	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	6067586	48889311	97474711	25	27929											
ABRA	137735	broad.mit.edu;hgsc.bcm.edu	37	8	107773724	107773724	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	107773724	C	T	107773724	2	4	475	1	0	0	0	0	0	0	0	1	100	912	32	2		2	ABRA	8	107773724	Silent	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	58884413	107773724	38590298	26	27930											
ZNF623	9831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144732657	144732657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	144732657	G	T	144732657	3	4	475	1	0	0	0	0	1	0	0	0	18059	962	34	4	617	4	ZNF623	8	144732657	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	36958933	144732657	1631365	27	27931											
MAPK15	225689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144800451	144800451	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	144800451	T	A	144800451	3	1	475	1	0	0	0	0	1	0	0	0	9284	1754	61	5	279	5	MAPK15	8	144800451	Missense_Mutation	SNP	T	TCGA-CJ-4641-01A-02D-1386-10	67794	144800451	1563571	28	27932											
ALDH18A1	5832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	97366699	97366699	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	G	97366699	T	G	97366699	2	3	475	1	0	0	0	0	0	0	0	1	489	1565	54	5		5	ALDH18A1	10	97366699	Silent	SNP	T	TCGA-CJ-4641-01A-02D-1386-10		97366699	38168048	29	27933											
DUSP5	1847	broad.mit.edu;hgsc.bcm.edu	37	10	112269965	112269965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	112269965	G	T	112269965	3	4	475	1	0	0	0	0	1	0	0	0	4830	1020	36	4	950	4	DUSP5	10	112269965	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	14903266	112269965	23264782	30	27934	347	2									
DUSP5	1847	broad.mit.edu;hgsc.bcm.edu	37	10	112269966	112269966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	C	112269966	T	C	112269966	3	2	475	1	0	0	0	0	1	0	0	0	4830	1638	57	3	951	3	DUSP5	10	112269966	Missense_Mutation	SNP	T	TCGA-CJ-4641-01A-02D-1386-10	1	112269966	23264781	31	27935	347	2									
OR52A4	390053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5142378	5142378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	G	5142378	A	G	5142378	3	3	475	1	0	0	0	0	1	0	0	0	11116	420	15	3	487	3	OR52A4	11	5142378	Missense_Mutation	SNP	A	TCGA-CJ-4641-01A-02D-1386-10		5142378	129864138	32	27936											
ARFGAP2	84364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47193866	47193866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	G	47193866	A	G	47193866	3	3	475	1	0	0	0	0	1	0	0	0	850	101	4	3	963	3	ARFGAP2	11	47193866	Missense_Mutation	SNP	A	TCGA-CJ-4641-01A-02D-1386-10	42051488	47193866	87812650	33	27937											
EHBP1L1	254102	broad.mit.edu;ucsc.edu	37	11	65348529	65348529	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	C	65348529	C	C	65348529	3	2	475	1	0	0	0	0	1	0	0	0	4978	347	12	5	661	5	EHBP1L1	11	65348529	Missense_Mutation	SNP	A	TCGA-CJ-4641-01A-02D-1386-10	18154663	65348529	69657987	34	27938											
POU2AF1	5450	broad.mit.edu;ucsc.edu	37	11	111228240	111228240	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	C	111228240	C	C	111228240	3	2	475	1	0	0	0	0	1	0	0	0	12277	1232	43	4	392	4	POU2AF1	11	111228240	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	45879711	111228240	23778276	35	27939											
TAS2R31	259290	broad.mit.edu;hgsc.bcm.edu	37	12	11183307	11183307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	11183307	G	T	11183307	3	4	475	1	0	0	0	0	1	0	0	0	15586	1328	46	4	305	4	TAS2R31	12	11183307	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10		11183307	122668588	36	27940											
PHLDA1	22822	broad.mit.edu	37	12	76424953	76424955	+	In_Frame_Del	DEL	TGG	-	-	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	-	76424955	-	-	76424953	7	5	475	1	0	1	0	1	0	0	0	0	11855	1580	55	0	640	0	PHLDA1	12	76424953	In_Frame_Del	DEL	TGG	TCGA-CJ-4641-01A-02D-1386-10	65241646	76424953	57426942	37	27941											
HIP1R	9026	broad.mit.edu	37	12	123343703	123343703	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	123343703	T	T	123343703	2	4	475	1	0	0	0	0	0	0	0	1	7122	680	24	2		2	HIP1R	12	123343703	Silent	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	46918750	123343703	10508192	38	27942											
GJA3	2700	broad.mit.edu	37	13	20717063	20717063	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	20717063	A	A	20717063	3	1	475	1	0	0	0	0	1	0	0	0	6409	1232	43	2	946	2	GJA3	13	20717063	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10		20717063	94452815	39	27943											
PABPC3	5042	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25670501	25670501	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	25670501	G	A	25670501	2	1	475	1	0	0	0	0	0	0	0	1	11372	1132	40	1		1	PABPC3	13	25670501	Silent	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	4953438	25670501	89499377	40	27944											
OLFM4	10562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	53603018	53603018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	53603018	G	T	53603018	3	4	475	1	0	0	0	0	1	0	0	0	10862	1203	42	4	49	4	OLFM4	13	53603018	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	27932517	53603018	61566860	41	27945											
NFATC4	4776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24845237	24845237	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	24845237	C	T	24845237	2	4	475	1	0	0	0	0	0	0	0	1	10372	842	30	2		2	NFATC4	14	24845237	Silent	SNP	C	TCGA-CJ-4641-01A-02D-1386-10		24845237	82504303	42	27946											
ADSSL1	122622	broad.mit.edu;hgsc.bcm.edu	37	14	105196283	105196283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	105196283	G	T	105196283	3	4	475	1	0	0	0	0	1	0	0	0	348	1194	42	4	252	4	ADSSL1	14	105196283	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	80351046	105196283	2153257	43	27947											
FBN1	2200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	48748913	48748913	+	Silent	SNP	C	C	A	rs140649	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	48748913	C	A	48748913	2	1	475	1	0	0	0	0	0	0	0	1	5709	465	17	4		4	FBN1	15	48748913	Silent	SNP	C	TCGA-CJ-4641-01A-02D-1386-10		48748913	53782479	44	27948											
CSPG4	1464	hgsc.bcm.edu	37	15	75982085	75982085	+	Missense_Mutation	SNP	C	C	T	rs79463888		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	75982085	C	T	75982085	3	4	475	1	0	0	0	0	1	0	0	0	3962	893	31	1	5679	1	CSPG4	15	75982085	Missense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	27233172	75982085	26549307	45	27949											
KIAA0174	0	broad.mit.edu;hgsc.bcm.edu	37	16	71956438	71956438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	C	71956438	A	C	71956438	3	2	475	1	0	0	0	0	1	0	0	0	8165	72	3	5	636	5	KIAA0174	16	71956438	Missense_Mutation	SNP	A	TCGA-CJ-4641-01A-02D-1386-10		71956438	18398315	46	27950											
AXIN2	8313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	63554465	63554465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	63554465	C	T	63554465	3	4	475	1	0	0	0	0	1	0	0	0	1237	710	25	2	2297	2	AXIN2	17	63554465	Missense_Mutation	SNP	C	TCGA-CJ-4641-01A-02D-1386-10		63554465	17640745	47	27951											
NARF	26502	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	80436689	80436689	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	80436689	C	T	80436689	2	4	475	1	0	0	0	0	0	0	0	1	10174	547	19	1		1	NARF	17	80436689	Silent	SNP	C	TCGA-CJ-4641-01A-02D-1386-10	16882224	80436689	758521	48	27952											
CCDC11	220136	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	47792751	47792751	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	47792751	G	A	47792751	2	1	475	1	0	0	0	0	0	0	0	1	2748	1103	39	1		1	CCDC11	18	47792751	Silent	SNP	G	TCGA-CJ-4641-01A-02D-1386-10		47792751	30284497	49	27953											
RBCK1	10616	broad.mit.edu;hgsc.bcm.edu	37	20	402784	402784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	A	402784	G	A	402784	3	1	475	1	0	0	0	0	1	0	0	0	13120	1232	43	2	980	2	RBCK1	20	402784	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10		402784	62622736	50	27954											
SPAG4	6676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34207221	34207221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	T	34207221	G	T	34207221	3	4	475	1	0	0	0	0	1	0	0	0	14993	1261	44	4	932	4	SPAG4	20	34207221	Missense_Mutation	SNP	G	TCGA-CJ-4641-01A-02D-1386-10	33804437	34207221	28818299	51	27955											
ACRC	93953	broad.mit.edu;ucsc.edu	37	X	70824426	70824426	+	Silent	SNP	T	C	C	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	C	70824426	C	C	70824426	2	2	475	1	0	0	0	0	0	0	0	1	171	1403	49	3		3	ACRC	23	70824426	Silent	SNP	T	TCGA-CJ-4641-01A-02D-1386-10		70824426	84446134	52	27956											
MAMLD1	10046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	149638089	149638089	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4641-01A-02D-1386-10	TCGA-CJ-4641-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c00265ac-c6cc-4349-ac30-e2e44582015a	18faa42a-cc27-47be-84d6-9ae798ac5172	C	149638089	A	C	149638089	3	2	475	1	0	0	0	0	1	0	0	0	9215	363	13	5	254	5	MAMLD1	23	149638089	Missense_Mutation	SNP	A	TCGA-CJ-4641-01A-02D-1386-10	78813663	149638089	5632471	53	27957											
ZMYM4	9202	broad.mit.edu;ucsc.edu	37	1	35853066	35853066	+	Silent	SNP	T	C	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	35853066	C	C	35853066	2	2	476	1	0	0	0	0	0	0	0	1	17714	1780	62	3		3	ZMYM4	1	35853066	Silent	SNP	T	TCGA-CJ-4643-01A-02D-1386-10		35853066	213397555	1	27958											
ZNF643	0	broad.mit.edu	37	1	40922615	40922616	+	Splice_Site	DEL	AG	-	-	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	-	40922616	-	-	40922615	8	5	476	1	0	1	0	1	0	0	1	0	18071	434	15	0	222	0	ZNF643	1	40922615	Splice_Site	DEL	AG	TCGA-CJ-4643-01A-02D-1386-10	5069549	40922615	208328006	2	27959											
SLC6A17	388662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110709686	110709686	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	110709686	C	T	110709686	2	4	476	1	0	0	0	0	0	0	0	1	14693	755	27	1		1	SLC6A17	1	110709686	Silent	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	69787071	110709686	138540935	3	27960											
NBPF10	100132406	broad.mit.edu	37	1	145301802	145301802	+	Silent	SNP	C	G	G	rs6690575	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	145301802	G	G	145301802	2	3	476	1	0	0	0	0	0	0	0	1	10200	813	29	4		4	NBPF10	1	145301802	Silent	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	34592116	145301802	103948819	4	27961											
BCAN	63827	broad.mit.edu;hgsc.bcm.edu	37	1	156622274	156622274	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	156622274	C	G	156622274	3	3	476	1	0	0	0	0	1	0	0	0	1345	710	25	4	1558	4	BCAN	1	156622274	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	11320472	156622274	92628347	5	27962											
RPS6KC1	26750	broad.mit.edu;ucsc.edu	37	1	213415458	213415458	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	213415458	G	G	213415458	3	3	476	1	0	0	0	0	1	0	0	0	13671	72	3	3	2681	3	RPS6KC1	1	213415458	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	56793184	213415458	35835163	6	27963											
ACTN2	88	broad.mit.edu;ucsc.edu	37	1	236911030	236911030	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	236911030	T	T	236911030	3	4	476	1	0	0	0	0	1	0	0	0	205	1241	43	4	1520	4	ACTN2	1	236911030	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	23495572	236911030	12339591	7	27964											
RHOQ	23433	broad.mit.edu	37	2	46803262	46803262	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	46803262	G	G	46803262	3	3	476	1	0	0	0	0	1	0	0	0	13355	101	4	3	248	3	RHOQ	2	46803262	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10		46803262	196396111	8	27965											
OTX1	5013	broad.mit.edu;hgsc.bcm.edu	37	2	63283088	63283088	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	63283088	C	A	63283088	2	1	476	1	0	0	0	0	0	0	0	1	11327	784	28	4		4	OTX1	2	63283088	Silent	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	16479826	63283088	179916285	9	27966											
CCDC74A	90557	broad.mit.edu;hgsc.bcm.edu	37	2	132285695	132285695	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	132285695	T	G	132285695	3	3	476	1	0	0	0	0	1	0	0	0	2849	1580	55	5	154	5	CCDC74A	2	132285695	Missense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10	69002607	132285695	110913678	10	27967											
IRS1	3667	broad.mit.edu	37	2	227660037	227660037	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	227660037	A	A	227660037	3	1	476	1	0	0	0	0	1	0	0	0	7847	1145	40	1	314	1	IRS1	2	227660037	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	95374342	227660037	15539336	11	27968											
PER2	8864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	239186456	239186456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	239186456	T	C	239186456	3	2	476	1	0	0	0	0	1	0	0	0	11737	1464	51	3	3733	3	PER2	2	239186456	Missense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10	11526419	239186456	4012917	12	27969											
PRR21	643905	hgsc.bcm.edu	37	2	240982219	240982219	+	Missense_Mutation	SNP	A	A	G	rs74006013	bycluster	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	240982219	A	G	240982219	3	3	476	1	0	0	0	0	1	0	0	0	12602	333	12	3	991	3	PRR21	2	240982219	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	1795763	240982219	2217154	13	27970											
RUVBL1	8607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	127816145	127816145	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	127816145	G	T	127816145	2	4	476	1	0	0	0	0	0	0	0	1	13765	1280	45	4		4	RUVBL1	3	127816145	Silent	SNP	G	TCGA-CJ-4643-01A-02D-1386-10		127816145	70206285	14	27971											
ESYT3	83850	hgsc.bcm.edu;ucsc.edu	37	3	138170931	138170942	+	Frame_Shift_Del	DEL	GGTAAGGCCGCT	GGTAAGGCCGCT	-	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	GGTAAGGCCGCT	GGTAAGGCCGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	-	138170942	GGTAAGGCCGCT	-	138170931	7	5	476	1	0	1	0	1	0	0	0	0	5268	1014	35	0	375	0	ESYT3	3	138170931	Frame_Shift_Del	DEL	GGTAAGGCCGCT	TCGA-CJ-4643-01A-02D-1386-10	10354786	138170931	59851499	15	27972											
PLCH1	23007	broad.mit.edu;ucsc.edu	37	3	155199834	155199834	+	Silent	SNP	A	G	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	155199834	G	G	155199834	2	3	476	1	0	0	0	0	0	0	0	1	12044	59	3	3		3	PLCH1	3	155199834	Silent	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	17028903	155199834	42822596	16	27973											
KLHL6	89857	broad.mit.edu;hgsc.bcm.edu	37	3	183217550	183217550	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	183217550	G	T	183217550	2	4	476	1	0	0	0	0	0	0	0	1	8400	1074	38	4		4	KLHL6	3	183217550	Silent	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	28017716	183217550	14804880	17	27974											
N4BP2	55728	broad.mit.edu	37	4	40121716	40121716	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	-	40121716	-	-	40121716	7	5	476	1	0	1	0	1	0	0	0	0	10117	942	33	0	2011	0	N4BP2	4	40121716	Frame_Shift_Del	DEL	G	TCGA-CJ-4643-01A-02D-1386-10		40121716	151032560	18	27975											
HLA-C	3107	hgsc.bcm.edu	37	6	31237802	31237802	+	Missense_Mutation	SNP	A	A	G	rs17413387	bycluster	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	31237802	A	G	31237802	3	3	476	1	0	0	0	0	1	0	0	0	7204	43	2	3	160	3	HLA-C	6	31237802	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10		31237802	139877265	19	27976											
ASCC3	10973	broad.mit.edu	37	6	100966004	100966005	+	Frame_Shift_Del	DEL	CA	-	-	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	-	100966005	-	-	100966004	7	5	476	1	0	1	0	1	0	0	0	0	1033	581	21	0	838	0	ASCC3	6	100966004	Frame_Shift_Del	DEL	CA	TCGA-CJ-4643-01A-02D-1386-10	69728202	100966004	70149063	20	27977											
AVL9	23080	broad.mit.edu	37	7	32615623	32615623	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	32615623	G	G	32615623	3	3	476	1	0	0	0	0	1	0	0	0	1228	391	14	3	1677	3	AVL9	7	32615623	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10		32615623	126523040	21	27978											
PTCD1	26024	broad.mit.edu;hgsc.bcm.edu	37	7	99022964	99022964	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	99022964	C	T	99022964	2	4	476	1	0	0	0	0	0	0	0	1	12737	726	26	2		2	PTCD1	7	99022964	Silent	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	66407341	99022964	60115699	22	27979											
MUC17	140453	hgsc.bcm.edu	37	7	100684091	100684092	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	100684092	-	C	100684091	7	5	476	1	0	1	1	0	0	0	0	0	9981	159	6	0	9404	0	MUC17	7	100684091	Frame_Shift_Ins	INS	-	TCGA-CJ-4643-01A-02D-1386-10	1661127	100684091	58454572	23	27980											
ARMC10	83787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	102716238	102716238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	102716238	G	T	102716238	3	4	476	1	0	0	0	0	1	0	0	0	950	1000	35	4	160	4	ARMC10	7	102716238	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	2032147	102716238	56422425	24	27981											
KCND2	3751	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	119915314	119915314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	119915314	G	A	119915314	3	1	476	1	0	0	0	0	1	0	0	0	8026	1117	39	1	630	1	KCND2	7	119915314	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	17199076	119915314	39223349	25	27982											
RBM33	155435	broad.mit.edu	37	7	155473566	155473567	+	Frame_Shift_Del	DEL	AG	-	-	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	-	155473567	-	-	155473566	7	5	476	1	0	1	0	1	0	0	0	0	13143	417	15	0	549	0	RBM33	7	155473566	Frame_Shift_Del	DEL	AG	TCGA-CJ-4643-01A-02D-1386-10	35558252	155473566	3665097	26	27983											
C9orf11	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	27296984	27296984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	27296984	T	C	27296984	3	2	476	1	0	0	0	0	1	0	0	0	2450	1406	49	3	846	3	C9orf11	9	27296984	Missense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10		27296984	113916447	27	27984											
AQP7	364	hgsc.bcm.edu	37	9	33385784	33385784	+	Missense_Mutation	SNP	C	C	G	rs114937176		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	33385784	C	G	33385784	3	3	476	1	0	0	0	0	1	0	0	0	831	680	24	4	430	4	AQP7	9	33385784	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	6088800	33385784	107827647	28	27985											
KIAA0368	23392	broad.mit.edu	37	9	114145539	114145539	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	114145539	G	G	114145539	3	3	476	1	0	0	0	0	1	0	0	0	8178	72	3	3	1828	3	KIAA0368	9	114145539	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	80759755	114145539	27067892	29	27986											
SETX	23064	hgsc.bcm.edu;ucsc.edu	37	9	135210042	135210042	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	-	135210042	T	-	135210042	7	5	476	1	0	1	0	1	0	0	0	0	14154	1493	52	0	7322	0	SETX	9	135210042	Frame_Shift_Del	DEL	T	TCGA-CJ-4643-01A-02D-1386-10	21064503	135210042	6003389	30	27987											
MUC2	4583	hgsc.bcm.edu	37	11	1093135	1093135	+	Missense_Mutation	SNP	A	A	C	rs56080332		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	1093135	A	C	1093135	3	2	476	1	0	0	0	0	1	0	0	0	9982	159	6	5	5072	5	MUC2	11	1093135	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10		1093135	133913381	31	27988											
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1642703	1642703	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	1642703	A	G	1642703	2	3	476	1	0	0	0	0	0	0	0	1	8570	40	2	3		3	KRTAP5-4	11	1642703	Silent	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	549568	1642703	133363813	32	27989											
HPS5	11234	broad.mit.edu;ucsc.edu	37	11	18327003	18327003	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	18327003	A	A	18327003	4	1	476	1	0	0	0	0	0	1	0	0	7349	1357	47	2	2591	2	HPS5	11	18327003	Nonsense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	16684300	18327003	116679513	33	27990											
LUZP2	338645	broad.mit.edu	37	11	25100121	25100121	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	25100121	G	G	25100121	3	3	476	1	0	0	0	0	1	0	0	0	9094	1551	54	5	1004	5	LUZP2	11	25100121	Missense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10	6773118	25100121	109906395	34	27991											
TTC12	54970	broad.mit.edu;ucsc.edu	37	11	113205696	113205696	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	113205696	C	C	113205696	3	2	476	1	0	0	0	0	1	0	0	0	16691	11	1	5	539	5	TTC12	11	113205696	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	88105575	113205696	21800820	35	27992											
EPS8	2059	broad.mit.edu	37	12	15803929	15803929	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	15803929	A	A	15803929	3	1	476	1	0	0	0	0	1	0	0	0	5196	1348	47	2	1238	2	EPS8	12	15803929	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10		15803929	118047966	36	27993											
ATF1	466	broad.mit.edu	37	12	51213515	51213515	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	-	51213515	-	-	51213515	7	5	476	1	0	1	0	1	0	0	0	0	1079	943	33	0	791	0	ATF1	12	51213515	Frame_Shift_Del	DEL	G	TCGA-CJ-4643-01A-02D-1386-10	35409586	51213515	82638380	37	27994											
XPOT	11260	broad.mit.edu	37	12	64812710	64812710	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	64812710	C	C	64812710	3	2	476	1	0	0	0	0	1	0	0	0	17462	1609	56	3	343	3	XPOT	12	64812710	Missense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10	13599195	64812710	69039185	38	27995											
RPH3A	22895	hgsc.bcm.edu	37	12	113314465	113314465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	113314465	C	T	113314465	3	4	476	1	0	0	0	0	1	0	0	0	13564	681	24	2	1007	2	RPH3A	12	113314465	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	48501755	113314465	20537430	39	27996											
TBC1D4	9882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	75936707	75936707	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	75936707	T	A	75936707	4	1	476	1	0	0	0	0	0	1	0	0	15634	1763	61	5	3441	5	TBC1D4	13	75936707	Nonsense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10		75936707	39233171	40	27997											
TMCO3	55002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	114149939	114149939	+	Missense_Mutation	SNP	G	G	A	rs139520979	by1000genomes	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	114149939	G	A	114149939	3	1	476	1	0	0	0	0	1	0	0	0	16009	1145	40	1	45	1	TMCO3	13	114149939	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	38213232	114149939	1019939	41	27998											
C14orf4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	77491962	77491962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	77491962	G	A	77491962	3	1	476	1	0	0	0	0	1	0	0	0	1775	1145	40	1	220	1	C14orf4	14	77491962	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10		77491962	29857578	42	27999											
AHNAK2	113146	hgsc.bcm.edu	37	14	105412138	105412138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	105412138	A	G	105412138	3	3	476	1	0	0	0	0	1	0	0	0	415	304	11	3	7741	3	AHNAK2	14	105412138	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	27920176	105412138	1937402	43	28000											
AHNAK2	113146	hgsc.bcm.edu	37	14	105419047	105419047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	105419047	A	C	105419047	3	2	476	1	0	0	0	0	1	0	0	0	415	159	6	5	14650	5	AHNAK2	14	105419047	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	6909	105419047	1930493	44	28001											
CYFIP1	23191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	22928512	22928512	+	Splice_Site	SNP	T	T	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	22928512	T	C	22928512	5	2	476	1	0	0	0	0	0	0	1	0	4139	1652	57	3	403	3	CYFIP1	15	22928512	Splice_Site	SNP	T	TCGA-CJ-4643-01A-02D-1386-10		22928512	79602880	45	28002											
PLA2G4B	100137049	broad.mit.edu;hgsc.bcm.edu	37	15	42132809	42132809	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	42132809	G	C	42132809	3	2	476	1	0	0	0	0	1	0	0	0	12009	971	34	4	180	4	PLA2G4B	15	42132809	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	19204297	42132809	60398583	46	28003											
ITGA11	22801	broad.mit.edu;hgsc.bcm.edu	37	15	68595444	68595444	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	68595444	G	C	68595444	3	2	476	1	0	0	0	0	1	0	0	0	7881	1087	38	4	50	4	ITGA11	15	68595444	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	26462635	68595444	33935948	47	28004											
ZNF434	0	broad.mit.edu;ucsc.edu	37	16	3432991	3432991	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	3432991	T	T	3432991	3	4	476	1	0	0	0	0	1	0	0	0	17920	884	31	1	142	1	ZNF434	16	3432991	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10		3432991	86921762	48	28005											
MYLK3	91807	broad.mit.edu;hgsc.bcm.edu	37	16	46766320	46766320	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	46766320	C	G	46766320	3	3	476	1	0	0	0	0	1	0	0	0	10065	623	22	4	1237	4	MYLK3	16	46766320	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	43333329	46766320	43588433	49	28006											
DNAH9	1770	hgsc.bcm.edu;ucsc.edu	37	17	11795233	11795233	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	11795233	A	T	11795233	3	4	476	1	0	0	0	0	1	0	0	0	4610	72	3	5	11482	5	DNAH9	17	11795233	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10		11795233	69399977	50	28007											
UBB	7314	hgsc.bcm.edu	37	17	16285560	16285560	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	16285560	T	C	16285560	2	2	476	1	0	0	0	0	0	0	0	1	16853	1538	54	3		3	UBB	17	16285560	Silent	SNP	T	TCGA-CJ-4643-01A-02D-1386-10	4490327	16285560	64909650	51	28008											
UNC119	9094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26875651	26875651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	26875651	G	A	26875651	3	1	476	1	0	0	0	0	1	0	0	0	16994	1294	45	2	498	2	UNC119	17	26875651	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	10590091	26875651	54319559	52	28009											
GPR179	440435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36482951	36482951	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	36482951	T	G	36482951	3	3	476	1	0	0	0	0	1	0	0	0	6681	1722	60	5	606	5	GPR179	17	36482951	Missense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10	9607300	36482951	44712259	53	28010											
ERBB2	2064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37873629	37873629	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	37873629	C	T	37873629	2	4	476	1	0	0	0	0	0	0	0	1	5208	610	22	2		2	ERBB2	17	37873629	Silent	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	1390678	37873629	43321581	54	28011											
KRTAP9-2	83899	hgsc.bcm.edu	37	17	39383027	39383027	+	Missense_Mutation	SNP	G	G	T	rs71371478		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	39383027	G	T	39383027	3	4	476	1	0	0	0	0	1	0	0	0	8580	1087	38	4	123	4	KRTAP9-2	17	39383027	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	1509398	39383027	41812183	55	28012											
BRCA1	672	broad.mit.edu;ucsc.edu	37	17	41234582	41234582	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	41234582	C	C	41234582	3	2	476	1	0	0	0	0	1	0	0	0	1500	1261	44	4	1513	4	BRCA1	17	41234582	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	1851555	41234582	39960628	56	28013											
LRRC46	90506	broad.mit.edu;hgsc.bcm.edu	37	17	45914323	45914323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	45914323	C	T	45914323	3	4	476	1	0	0	0	0	1	0	0	0	9010	623	22	2	833	2	LRRC46	17	45914323	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	4679741	45914323	35280887	57	28014											
GH2	2689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61958132	61958132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	61958132	C	G	61958132	3	3	476	1	0	0	0	0	1	0	0	0	6375	637	22	4	542	4	GH2	17	61958132	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	16043809	61958132	19237078	58	28015											
BAHCC1	57597	hgsc.bcm.edu	37	17	79424537	79424537	+	Silent	SNP	C	C	T	rs34224936	bycluster;byfrequency;by1000genomes	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	79424537	C	T	79424537	2	4	476	1	0	0	0	0	0	0	0	1	1296	796	28	2		2	BAHCC1	17	79424537	Silent	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	17466405	79424537	1770673	59	28016											
CDH7	1005	broad.mit.edu;ucsc.edu	37	18	63430106	63430106	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	63430106	G	G	63430106	3	3	476	1	0	0	0	0	1	0	0	0	3117	594	21	4	30	4	CDH7	18	63430106	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10		63430106	14647142	60	28017											
TICAM1	148022	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4817211	4817211	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	4817211	T	A	4817211	3	1	476	1	0	0	0	0	1	0	0	0	15904	1490	52	5	963	5	TICAM1	19	4817211	Missense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10		4817211	54311772	61	28018											
PTPRS	5802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	5214437	5214437	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	5214437	G	A	5214437	4	1	476	1	0	0	0	0	0	1	0	0	12824	1357	47	2	1333	2	PTPRS	19	5214437	Nonsense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	397226	5214437	53914546	62	28019											
ZNF493	284443	broad.mit.edu	37	19	21607481	21607482	+	Frame_Shift_Del	DEL	AA	-	-	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	-	21607482	-	-	21607481	7	5	476	1	0	1	0	1	0	0	0	0	17956	363	13	0	2097	0	ZNF493	19	21607481	Frame_Shift_Del	DEL	AA	TCGA-CJ-4643-01A-02D-1386-10	16393044	21607481	37521502	63	28020											
RASGRP4	115727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38904046	38904046	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	38904046	A	T	38904046	4	4	476	1	0	0	0	0	0	1	0	0	13090	273	10	5	754	5	RASGRP4	19	38904046	Nonsense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	17296565	38904046	20224937	64	28021											
ARHGEF1	9138	broad.mit.edu;hgsc.bcm.edu	37	19	42408211	42408211	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	42408211	T	G	42408211	3	3	476	1	0	0	0	0	1	0	0	0	893	1490	52	5	2069	5	ARHGEF1	19	42408211	Missense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10	3504165	42408211	16720772	65	28022											
ZNF610	162963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52857566	52857566	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	52857566	C	T	52857566	2	4	476	1	0	0	0	0	0	0	0	1	18048	912	32	2		2	ZNF610	19	52857566	Silent	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	10449355	52857566	6271417	66	28023											
LILRA6	79168	hgsc.bcm.edu	37	19	54745508	54745508	+	Missense_Mutation	SNP	G	G	A	rs61734497	byfrequency	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	54745508	G	A	54745508	3	1	476	1	0	0	0	0	1	0	0	0	8796	1377	48	2	863	2	LILRA6	19	54745508	Missense_Mutation	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	1887942	54745508	4383475	67	28024											
LAIR1	3903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54872809	54872809	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	54872809	C	T	54872809	2	4	476	1	0	0	0	0	0	0	0	1	8609	697	25	2		2	LAIR1	19	54872809	Silent	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	127301	54872809	4256174	68	28025											
NLRP5	126206	broad.mit.edu;ucsc.edu	37	19	56515289	56515289	+	Silent	SNP	A	G	G	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	56515289	G	G	56515289	2	3	476	1	0	0	0	0	0	0	0	1	10487	98	4	3		3	NLRP5	19	56515289	Silent	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	1642480	56515289	2613694	69	28026											
PLK1S1	55857	broad.mit.edu	37	20	21143767	21143767	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	-	21143767	-	-	21143767	7	5	476	1	0	1	0	1	0	0	0	0	12102	246	9	0	1341	0	PLK1S1	20	21143767	Frame_Shift_Del	DEL	A	TCGA-CJ-4643-01A-02D-1386-10		21143767	41881753	70	28027											
ZSWIM3	140831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44506358	44506358	+	Silent	SNP	G	G	A	rs149497744		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	44506358	G	A	44506358	2	1	476	1	0	0	0	0	0	0	0	1	18254	1132	40	1		1	ZSWIM3	20	44506358	Silent	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	23362591	44506358	18519162	71	28028											
VCX2	51480	hgsc.bcm.edu	37	X	8138165	8138165	+	Missense_Mutation	SNP	C	C	G	rs1058237	bycluster;byfrequency;by1000genomes	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	8138165	C	G	8138165	3	3	476	1	0	0	0	0	1	0	0	0	17155	507	18	4	95	4	VCX2	23	8138165	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10		8138165	147132395	72	28029	348	3	1	55		4	2	18	N	T_C_A	4.17348e-05
VCX2	51480	hgsc.bcm.edu	37	X	8138170	8138170	+	Missense_Mutation	SNP	C	C	G	rs75657421	byfrequency;by1000genomes	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	8138170	C	G	8138170	3	3	476	1	0	0	0	0	1	0	0	0	17155	797	28	4	100	4	VCX2	23	8138170	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	5	8138170	147132390	73	28030	348	3	1	55		4	2	18	N	T_C_A	4.17348e-05
VCX2	51480	hgsc.bcm.edu	37	X	8138171	8138171	+	Missense_Mutation	SNP	T	T	C	rs78723459	by1000genomes	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	C	8138171	T	C	8138171	3	2	476	1	0	0	0	0	1	0	0	0	17155	1551	54	3	101	3	VCX2	23	8138171	Missense_Mutation	SNP	T	TCGA-CJ-4643-01A-02D-1386-10	1	8138171	147132389	74	28031	348	3	1	55		4	2	18	N	T_C_A	4.17348e-05
VCX2	51480	hgsc.bcm.edu	37	X	8138182	8138182	+	Missense_Mutation	SNP	A	A	G	rs41305169	by1000genomes	TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	G	8138182	A	G	8138182	3	3	476	1	0	0	0	0	1	0	0	0	17155	188	7	3	112	3	VCX2	23	8138182	Missense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	11	8138182	147132378	75	28032			1	55		4	2	18	N	T_C_A	4.17348e-05
WNK3	65267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	54319687	54319687	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	T	54319687	A	T	54319687	4	4	476	1	0	0	0	0	0	1	0	0	17391	108	4	5	3699	5	WNK3	23	54319687	Nonsense_Mutation	SNP	A	TCGA-CJ-4643-01A-02D-1386-10	46181505	54319687	100950873	76	28033											
USP51	158880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	55513642	55513642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	55513642	C	A	55513642	3	1	476	1	0	0	0	0	1	0	0	0	17095	680	24	4	408	4	USP51	23	55513642	Missense_Mutation	SNP	C	TCGA-CJ-4643-01A-02D-1386-10	1193955	55513642	99756918	77	28034											
CNGA2	1260	broad.mit.edu;ucsc.edu	37	X	150912325	150912325	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4643-01A-02D-1386-10	TCGA-CJ-4643-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5e00e420-94fd-4115-9cd9-cef24f6df0eb	0e427f57-9cae-40dc-9a75-6387da9af195	A	150912325	A	A	150912325	2	1	476	1	0	0	0	0	0	0	0	1	3599	933	33	2		2	CNGA2	23	150912325	Silent	SNP	G	TCGA-CJ-4643-01A-02D-1386-10	95398683	150912325	4358235	78	28035											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11188078	11188078	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	11188078	C	G	11188078	3	3	477	1	0	0	0	0	1	0	0	0	9961	507	18	4	1697	4	MTOR	1	11188078	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10		11188078	238062543	1	28036			1	56		2	2	23	C		5.756256e-05
MTOR	2475	broad.mit.edu	37	1	11188100	11188100	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	11188100	G	G	11188100	3	3	477	1	0	0	0	0	1	0	0	0	9961	478	17	4	1719	4	MTOR	1	11188100	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	22	11188100	238062521	2	28037			1	56		2	2	23	C		5.756256e-05
HNRNPCL1	343069	hgsc.bcm.edu	37	1	12907781	12907781	+	Missense_Mutation	SNP	T	T	C	rs28441396	byfrequency	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	12907781	T	C	12907781	3	2	477	1	0	0	0	0	1	0	0	0	7270	1435	50	3	521	3	HNRNPCL1	1	12907781	Missense_Mutation	SNP	T	TCGA-CJ-4644-01A-02D-1386-10	1719681	12907781	236342840	3	28038											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19407977	19407977	+	Silent	SNP	G	G	A	rs138176260	bycluster;by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	19407977	G	A	19407977	2	1	477	1	0	0	0	0	0	0	0	1	16916	1136	40	1		1	UBR4	1	19407977	Silent	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	6500196	19407977	229842644	4	28039											
CELA3A	10136	hgsc.bcm.edu	37	1	22332241	22332241	+	Missense_Mutation	SNP	A	A	G	rs75527968		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	22332241	A	G	22332241	3	3	477	1	0	0	0	0	1	0	0	0	3215	304	11	3	328	3	CELA3A	1	22332241	Missense_Mutation	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	2924264	22332241	226918380	5	28040											
SRRM1	10250	broad.mit.edu;hgsc.bcm.edu	37	1	24993365	24993365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	24993365	C	T	24993365	3	4	477	1	0	0	0	0	1	0	0	0	15180	623	22	2	1738	2	SRRM1	1	24993365	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	2661124	24993365	224257256	6	28041											
KDM4A	9682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44159696	44159696	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	-	44159696	C	-	44159696	7	5	477	1	0	1	0	1	0	0	0	0	8135	912	32	0	2469	0	KDM4A	1	44159696	Frame_Shift_Del	DEL	C	TCGA-CJ-4644-01A-02D-1386-10	19166331	44159696	205090925	7	28042											
NBPF9	400818	broad.mit.edu	37	1	144815968	144815968	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	144815968	A	A	144815968	3	1	477	1	0	0	0	0	1	0	0	0	10206	1029	36	2	1371	2	NBPF9	1	144815968	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	100656272	144815968	104434653	8	28043											
FLG2	388698	broad.mit.edu;hgsc.bcm.edu	37	1	152330075	152330075	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	152330075	G	A	152330075	4	1	477	1	0	0	0	0	0	1	0	0	5930	1066	37	1	6992	1	FLG2	1	152330075	Nonsense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	7514107	152330075	96920546	9	28044											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu	37	1	201036117	201036117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	201036117	G	A	201036117	3	1	477	1	0	0	0	0	1	0	0	0	2549	1145	40	1	3166	1	CACNA1S	1	201036117	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	48706042	201036117	48214504	10	28045											
HHIPL2	79802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	222705449	222705449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	222705449	G	T	222705449	3	4	477	1	0	0	0	0	1	0	0	0	7101	1029	36	4	608	4	HHIPL2	1	222705449	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	21669332	222705449	26545172	11	28046											
ZP4	57829	broad.mit.edu;ucsc.edu	37	1	238045723	238045723	+	Nonstop_Mutation	SNP	T	A	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	238045723	A	A	238045723	4	1	477	1	0	0	0	0	0	0	0	0	18230	1761	61	5	4	5	ZP4	1	238045723	Nonstop_Mutation	SNP	T	TCGA-CJ-4644-01A-02D-1386-10	15340274	238045723	11204898	12	28047											
PUM2	23369	broad.mit.edu;ucsc.edu	37	2	20451396	20451396	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	20451396	A	A	20451396	3	1	477	1	0	0	0	0	1	0	0	0	12839	1783	62	5	53	5	PUM2	2	20451396	Missense_Mutation	SNP	T	TCGA-CJ-4644-01A-02D-1386-10		20451396	222747977	13	28048	349	2									
PUM2	23369	broad.mit.edu;ucsc.edu	37	2	20451397	20451397	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	20451397	T	T	20451397	2	4	477	1	0	0	0	0	0	0	0	1	12839	912	32	2		2	PUM2	2	20451397	Silent	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	1	20451397	222747976	14	28049	349	2									
MPHOSPH10	10199	broad.mit.edu;hgsc.bcm.edu	37	2	71360677	71360677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	71360677	G	T	71360677	3	4	477	1	0	0	0	0	1	0	0	0	9732	1000	35	4	745	4	MPHOSPH10	2	71360677	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	50909280	71360677	171838696	15	28050											
LIMS1	3987	broad.mit.edu	37	2	109293101	109293101	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	109293101	T	T	109293101	3	4	477	1	0	0	0	0	1	0	0	0	8810	478	17	2	707	2	LIMS1	2	109293101	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	37932424	109293101	133906272	16	28051											
HOXD3	3232	broad.mit.edu;ucsc.edu	37	2	177033940	177033940	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	177033940	C	C	177033940	3	2	477	1	0	0	0	0	1	0	0	0	7330	1203	42	4	100	4	HOXD3	2	177033940	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	67740839	177033940	66165433	17	28052	350	2									
HOXD3	3232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	177033941	177033941	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	177033941	C	T	177033941	2	4	477	1	0	0	0	0	0	0	0	1	7330	784	28	2		2	HOXD3	2	177033941	Silent	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	1	177033941	66165432	18	28053	350	2									
TTN	7273	broad.mit.edu	37	2	179437576	179437576	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	179437576	G	G	179437576	3	3	477	1	0	0	0	0	1	0	0	0	16747	101	4	3	34844	3	TTN	2	179437576	Missense_Mutation	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	2403635	179437576	63761797	19	28054											
TTN	7273	broad.mit.edu;hgsc.bcm.edu	37	2	179449638	179449638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	179449638	C	T	179449638	3	4	477	1	0	0	0	0	1	0	0	0	16747	710	25	2	43461	2	TTN	2	179449638	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	12062	179449638	63749735	20	28055											
OBSL1	23363	broad.mit.edu;hgsc.bcm.edu	37	2	220428159	220428159	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	220428159	C	A	220428159	2	1	477	1	0	0	0	0	0	0	0	1	10820	697	25	4		4	OBSL1	2	220428159	Silent	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	40978521	220428159	22771214	21	28056											
RBM44	375316	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238733023	238733023	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	238733023	C	T	238733023	4	4	477	1	0	0	0	0	0	1	0	0	13151	827	29	2	2447	2	RBM44	2	238733023	Nonsense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	18304864	238733023	4466350	22	28057											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191485	10191485	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	10191485	G	T	10191485	4	4	477	1	0	0	0	0	0	1	0	0	17174	943	33	4	488	4	VHL	3	10191485	Nonsense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10		10191485	187830945	23	28058											
EOMES	8320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	27760303	27760303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	27760303	T	G	27760303	3	3	477	1	0	0	0	0	1	0	0	0	5149	1783	62	5	832	5	EOMES	3	27760303	Missense_Mutation	SNP	T	TCGA-CJ-4644-01A-02D-1386-10	17568818	27760303	170262127	24	28059											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52702662	52702662	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	52702662	C	T	52702662	5	4	477	1	0	0	0	0	0	0	1	0	11498	927	32	2	4776	2	PBRM1	3	52702662	Splice_Site	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	24942359	52702662	145319768	25	28060											
PDZRN3	23024	broad.mit.edu;hgsc.bcm.edu	37	3	73432856	73432856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	73432856	C	A	73432856	3	1	477	1	0	0	0	0	1	0	0	0	11716	768	27	4	343	4	PDZRN3	3	73432856	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	20730194	73432856	124589574	26	28061											
ISY1	57461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128848936	128848936	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	128848936	G	A	128848936	2	1	477	1	0	0	0	0	0	0	0	1	7873	1161	41	2		2	ISY1	3	128848936	Silent	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	55416080	128848936	69173494	27	28062											
C3orf72	401089	hgsc.bcm.edu;ucsc.edu	37	3	138668458	138668467	+	Frame_Shift_Del	DEL	GGCATTCGAA	GGCATTCGAA	-	rs141282655	by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	GGCATTCGAA	GGCATTCGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	-	138668467	GGCATTCGAA	-	138668458	7	5	477	1	0	1	0	1	0	0	0	0	2246	1116	39	0	203	0	C3orf72	3	138668458	Frame_Shift_Del	DEL	GGCATTCGAA	TCGA-CJ-4644-01A-02D-1386-10	9819522	138668458	59353972	28	28063											
TMEM41A	90407	hgsc.bcm.edu	37	3	185212513	185212513	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	185212513	A	G	185212513	2	3	477	1	0	0	0	0	0	0	0	1	16176	98	4	3		3	TMEM41A	3	185212513	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	46544055	185212513	12809917	29	28064											
MUC4	4585	hgsc.bcm.edu	37	3	195513445	195513445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	195513445	C	T	195513445	3	4	477	1	0	0	0	0	1	0	0	0	9985	797	28	2		2	MUC4	3	195513445	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	10300932	195513445	2508985	30	28065			2	57		5	3	1582	N	T_G_C_A	8.527498e-06
MUC4	4585	broad.mit.edu;hgsc.bcm.edu	37	3	195513539	195513539	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	195513539	C	G	195513539	3	3	477	1	0	0	0	0	1	0	0	0	9985	710	25	4		4	MUC4	3	195513539	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	94	195513539	2508891	31	28066	351	3	2	57		5	3	1582	N	T_G_C_A	8.527498e-06
MUC4	4585	broad.mit.edu;hgsc.bcm.edu	37	3	195513540	195513540	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	195513540	A	G	195513540	2	3	477	1	0	0	0	0	0	0	0	1	9985	214	8	3		3	MUC4	3	195513540	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	1	195513540	2508890	32	28067	351	3	2	57		5	3	1582	N	T_G_C_A	8.527498e-06
MUC4	4585	broad.mit.edu;hgsc.bcm.edu	37	3	195513541	195513541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	195513541	T	C	195513541	3	2	477	1	0	0	0	0	1	0	0	0	9985	1493	52	3		3	MUC4	3	195513541	Missense_Mutation	SNP	T	TCGA-CJ-4644-01A-02D-1386-10	1	195513541	2508889	33	28068	351	3	2	57		5	3	1582	N	T_G_C_A	8.527498e-06
MUC4	4585	broad.mit.edu;hgsc.bcm.edu	37	3	195515026	195515026	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	195515026	G	C	195515026	3	2	477	1	0	0	0	0	1	0	0	0	9985	1029	36	4		4	MUC4	3	195515026	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	1485	195515026	2507404	34	28069			2	57		5	3	1582	N	T_G_C_A	8.527498e-06
PCDHA6	56142	broad.mit.edu;hgsc.bcm.edu	37	5	140209499	140209499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	140209499	C	T	140209499	3	4	477	1	0	0	0	0	1	0	0	0	11535	893	31	1	1825	1	PCDHA6	5	140209499	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10		140209499	40705761	35	28070											
ZNF354A	6940	hgsc.bcm.edu;ucsc.edu	37	5	178139394	178139394	+	Silent	SNP	T	T	C	rs191516498	by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	178139394	T	C	178139394	2	2	477	1	0	0	0	0	0	0	0	1	17876	1490	52	3		3	ZNF354A	5	178139394	Silent	SNP	T	TCGA-CJ-4644-01A-02D-1386-10	37929895	178139394	2775866	36	28071											
SLC35B3	51000	broad.mit.edu;hgsc.bcm.edu	37	6	8422813	8422813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	8422813	C	T	8422813	3	4	477	1	0	0	0	0	1	0	0	0	14590	507	18	2	769	2	SLC35B3	6	8422813	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10		8422813	162692254	37	28072											
TCP11	6954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35086049	35086049	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	35086049	A	G	35086049	2	3	477	1	0	0	0	0	0	0	0	1	15725	1	1	3		3	TCP11	6	35086049	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	26663236	35086049	136029018	38	28073											
KLHL31	401265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	53516418	53516418	+	Missense_Mutation	SNP	G	G	T	rs12204882	alternate_allele	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	53516418	G	T	53516418	3	4	477	1	0	0	0	0	1	0	0	0	8392	942	33	4	25	4	KLHL31	6	53516418	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	18430369	53516418	117598649	39	28074											
PILRB	29990	hgsc.bcm.edu	37	7	99956439	99956439	+	Missense_Mutation	SNP	T	T	C	rs35986051	byfrequency;by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	99956439	T	C	99956439	3	2	477	1	0	0	0	0	1	0	0	0	11933	1725	60	3	197	3	PILRB	7	99956439	Missense_Mutation	SNP	T	TCGA-CJ-4644-01A-02D-1386-10		99956439	59182224	40	28075											
SLC26A4	5172	broad.mit.edu;hgsc.bcm.edu	37	7	107329537	107329537	+	Silent	SNP	G	G	A	rs140778437		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	107329537	G	A	107329537	2	1	477	1	0	0	0	0	0	0	0	1	14532	1103	39	1		1	SLC26A4	7	107329537	Silent	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	7373098	107329537	51809126	41	28076											
CDCA2	157313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	25364809	25364809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	25364809	C	T	25364809	3	4	477	1	0	0	0	0	1	0	0	0	3088	739	26	2	2681	2	CDCA2	8	25364809	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10		25364809	120999213	42	28077											
NKAIN3	286183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	63902748	63902748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	63902748	G	T	63902748	3	4	477	1	0	0	0	0	1	0	0	0	10444	1319	46	4	576	4	NKAIN3	8	63902748	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	38537939	63902748	82461274	43	28078											
PABPC1	26986	hgsc.bcm.edu	37	8	101718965	101718965	+	Missense_Mutation	SNP	G	G	A	rs62513921	bycluster	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	101718965	G	A	101718965	3	1	477	1	0	0	0	0	1	0	0	0	11370	1116	39	1	410	1	PABPC1	8	101718965	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	37816217	101718965	44645057	44	28079	352	2									
PABPC1	26986	hgsc.bcm.edu	37	8	101718968	101718968	+	Missense_Mutation	SNP	C	C	T	rs62513922	bycluster	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	101718968	C	T	101718968	3	4	477	1	0	0	0	0	1	0	0	0	11370	478	17	2	413	2	PABPC1	8	101718968	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	3	101718968	44645054	45	28080	352	2									
PRSS3	5646	hgsc.bcm.edu	37	9	33798079	33798079	+	Silent	SNP	T	T	C	rs144845866	byfrequency	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	33798079	T	C	33798079	2	2	477	1	0	0	0	0	0	0	0	1	12632	1710	59	3		3	PRSS3	9	33798079	Silent	SNP	T	TCGA-CJ-4644-01A-02D-1386-10		33798079	107415352	46	28081											
PRUNE2	158471	hgsc.bcm.edu;ucsc.edu	37	9	79323220	79323220	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	-	79323220	T	-	79323220	7	5	477	1	0	1	0	1	0	0	0	0	12651	1609	56	0	5344	0	PRUNE2	9	79323220	Frame_Shift_Del	DEL	T	TCGA-CJ-4644-01A-02D-1386-10	45525141	79323220	61890211	47	28082											
MED27	9442	broad.mit.edu	37	9	134735980	134735980	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	134735980	A	A	134735980	3	1	477	1	0	0	0	0	1	0	0	0	9452	1116	39	1	58	1	MED27	9	134735980	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	55412760	134735980	6477451	48	28083											
PTCHD3	374308	broad.mit.edu;hgsc.bcm.edu	37	10	27702370	27702370	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	27702370	G	A	27702370	2	1	477	1	0	0	0	0	0	0	0	1	12744	1140	40	1		1	PTCHD3	10	27702370	Silent	SNP	G	TCGA-CJ-4644-01A-02D-1386-10		27702370	107832377	49	28084											
MUC2	4583	broad.mit.edu;hgsc.bcm.edu	37	11	1093272	1093272	+	Silent	SNP	A	A	C	rs56230143		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	1093272	A	C	1093272	2	2	477	1	0	0	0	0	0	0	0	1	9982	204	8	5		5	MUC2	11	1093272	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10		1093272	133913244	50	28085											
MUC2	4583	hgsc.bcm.edu	37	11	1093569	1093569	+	Silent	SNP	A	A	C	rs72842460	bycluster;byfrequency;by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	1093569	A	C	1093569	2	2	477	1	0	0	0	0	0	0	0	1	9982	117	5	5		5	MUC2	11	1093569	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	297	1093569	133912947	51	28086											
INSC	387755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	15222420	15222420	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	15222420	G	C	15222420	2	2	477	1	0	0	0	0	0	0	0	1	7771	1248	44	4		4	INSC	11	15222420	Silent	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	14128851	15222420	119784096	52	28087											
ARL2	402	broad.mit.edu;hgsc.bcm.edu	37	11	64786159	64786159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	64786159	G	A	64786159	3	1	477	1	0	0	0	0	1	0	0	0	933	1087	38	1	303	1	ARL2	11	64786159	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	49563739	64786159	70220357	53	28088											
FAM86C	0	hgsc.bcm.edu	37	11	71504464	71504464	+	Silent	SNP	C	C	T	rs139287982	by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	71504464	C	T	71504464	2	4	477	1	0	0	0	0	0	0	0	1	5653	547	19	1		1	FAM86C	11	71504464	Silent	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	6718305	71504464	63502052	54	28089											
DIXDC1	85458	hgsc.bcm.edu;ucsc.edu	37	11	111835364	111835365	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	111835365	-	C	111835364	7	5	477	1	0	1	1	0	0	0	0	0	4543	1116	39	0	158	0	DIXDC1	11	111835364	Frame_Shift_Ins	INS	-	TCGA-CJ-4644-01A-02D-1386-10	40330900	111835364	23171152	55	28090	353	2									
DIXDC1	85458	hgsc.bcm.edu	37	11	111835369	111835369	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	-	111835369	G	-	111835369	7	5	477	1	0	1	0	1	0	0	0	0	4543	1348	47	0	163	0	DIXDC1	11	111835369	Frame_Shift_Del	DEL	G	TCGA-CJ-4644-01A-02D-1386-10	5	111835369	23171147	56	28091	353	2									
PYROXD1	79912	broad.mit.edu;hgsc.bcm.edu	37	12	21621622	21621622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	21621622	G	C	21621622	3	2	477	1	0	0	0	0	1	0	0	0	12879	1290	45	4	1483	4	PYROXD1	12	21621622	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10		21621622	112230273	57	28092											
IPO8	10526	hgsc.bcm.edu	37	12	30790090	30790090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	30790090	G	T	30790090	3	4	477	1	0	0	0	0	1	0	0	0	7805	1020	36	4	608	4	IPO8	12	30790090	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	9168468	30790090	103061805	58	28093											
GXYLT1	283464	hgsc.bcm.edu	37	12	42512967	42512967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	42512967	A	T	42512967	3	4	477	1	0	0	0	0	1	0	0	0	6910	272	10	5	1025	5	GXYLT1	12	42512967	Missense_Mutation	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	11722877	42512967	91338928	59	28094											
FRY	10129	broad.mit.edu;hgsc.bcm.edu	37	13	32776165	32776165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	32776165	G	T	32776165	3	4	477	1	0	0	0	0	1	0	0	0	6070	1319	46	4	3952	4	FRY	13	32776165	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10		32776165	82393713	60	28095											
COG3	83548	broad.mit.edu;hgsc.bcm.edu	37	13	46054427	46054427	+	Splice_Site	SNP	T	T	C	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	46054427	T	C	46054427	5	2	477	1	0	0	0	0	0	0	1	0	3661	1652	57	3	565	3	COG3	13	46054427	Splice_Site	SNP	T	TCGA-CJ-4644-01A-02D-1386-10	13278262	46054427	69115451	61	28096											
SLC7A8	23428	broad.mit.edu	37	14	23635685	23635685	+	Silent	SNP	C	A	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	23635685	A	A	23635685	2	1	477	1	0	0	0	0	0	0	0	1	14717	581	21	4		4	SLC7A8	14	23635685	Silent	SNP	C	TCGA-CJ-4644-01A-02D-1386-10		23635685	83713855	62	28097											
SYNE2	23224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64408465	64408465	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	-	64408465	A	-	64408465	7	5	477	1	0	1	0	1	0	0	0	0	15458	217	8	0	204	0	SYNE2	14	64408465	Frame_Shift_Del	DEL	A	TCGA-CJ-4644-01A-02D-1386-10	40772780	64408465	42941075	63	28098											
ATG2B	55102	broad.mit.edu;hgsc.bcm.edu	37	14	96789012	96789012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	96789012	T	G	96789012	3	3	477	1	0	0	0	0	1	0	0	0	1094	1606	56	5	3739	5	ATG2B	14	96789012	Missense_Mutation	SNP	T	TCGA-CJ-4644-01A-02D-1386-10	32380547	96789012	10560528	64	28099											
AHNAK2	113146	hgsc.bcm.edu	37	14	105416367	105416367	+	Silent	SNP	A	A	C	rs34605366	bycluster;byfrequency;by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	105416367	A	C	105416367	2	2	477	1	0	0	0	0	0	0	0	1	415	146	6	5		5	AHNAK2	14	105416367	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	8627355	105416367	1933173	65	28100											
AHNAK2	113146	hgsc.bcm.edu	37	14	105416839	105416839	+	Missense_Mutation	SNP	G	G	T	rs145693791	by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	105416839	G	T	105416839	3	4	477	1	0	0	0	0	1	0	0	0	415	1087	38	4	12442	4	AHNAK2	14	105416839	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	472	105416839	1932701	66	28101											
JMJD7	100137047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42128715	42128715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	42128715	C	T	42128715	3	4	477	1	0	0	0	0	1	0	0	0	7961	507	18	2	690	2	JMJD7	15	42128715	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10		42128715	60402677	67	28102											
OR4F15	390649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	102358604	102358604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	102358604	C	T	102358604	3	4	477	1	0	0	0	0	1	0	0	0	11068	710	25	2	217	2	OR4F15	15	102358604	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	60229889	102358604	172788	68	28103											
MMP25	64386	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3100414	3100414	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	3100414	C	T	3100414	2	4	477	1	0	0	0	0	0	0	0	1	9669	755	27	1		1	MMP25	16	3100414	Silent	SNP	C	TCGA-CJ-4644-01A-02D-1386-10		3100414	87254339	69	28104											
ATP2A1	487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28913241	28913241	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	28913241	A	T	28913241	3	4	477	1	0	0	0	0	1	0	0	0	1136	217	8	5	2220	5	ATP2A1	16	28913241	Missense_Mutation	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	25812827	28913241	61441512	70	28105											
COG4	25839	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	70548368	70548368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	70548368	G	C	70548368	3	2	477	1	0	0	0	0	1	0	0	0	3662	1252	44	4	2019	4	COG4	16	70548368	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	41635127	70548368	19806385	71	28106											
SLC7A5	8140	hgsc.bcm.edu	37	16	87885388	87885388	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	87885388	G	A	87885388	2	1	477	1	0	0	0	0	0	0	0	1	14713	1103	39	1		1	SLC7A5	16	87885388	Silent	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	17337020	87885388	2469365	72	28107											
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254247	39254247	+	Nonsense_Mutation	SNP	A	A	T	rs137943557	by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	39254247	A	T	39254247	4	4	477	1	0	0	0	0	0	1	0	0	8563	273	10	5	471	5	KRTAP4-8	17	39254247	Nonsense_Mutation	SNP	A	TCGA-CJ-4644-01A-02D-1386-10		39254247	41940963	73	28108											
FMNL1	752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	43323619	43323619	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	43323619	G	T	43323619	4	4	477	1	0	0	0	0	0	1	0	0	5958	1291	45	4	3231	4	FMNL1	17	43323619	Nonsense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	4069372	43323619	37871591	74	28109											
NEDD4L	23327	broad.mit.edu;hgsc.bcm.edu	37	18	56033230	56033230	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	56033230	G	A	56033230	5	1	477	1	0	0	0	0	0	0	1	0	10318	1014	35	2	1943	2	NEDD4L	18	56033230	Splice_Site	SNP	G	TCGA-CJ-4644-01A-02D-1386-10		56033230	22044018	75	28110											
PLIN4	729359	hgsc.bcm.edu;ucsc.edu	37	19	4511491	4511491	+	Silent	SNP	A	A	G	rs10423324	bycluster;byfrequency	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	4511491	A	G	4511491	2	3	477	1	0	0	0	0	0	0	0	1	12099	378	14	3		3	PLIN4	19	4511491	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10		4511491	54617492	76	28111											
PLIN4	729359	hgsc.bcm.edu	37	19	4512945	4512945	+	Missense_Mutation	SNP	C	C	T	rs75031432	bycluster;byfrequency	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	4512945	C	T	4512945	3	4	477	1	0	0	0	0	1	0	0	0	12099	594	21	2	3104	2	PLIN4	19	4512945	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	1454	4512945	54616038	77	28112	354	2									
PLIN4	729359	hgsc.bcm.edu	37	19	4512946	4512946	+	Silent	SNP	A	A	G	rs79662071	byfrequency	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	4512946	A	G	4512946	2	3	477	1	0	0	0	0	0	0	0	1	12099	175	7	3		3	PLIN4	19	4512946	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	1	4512946	54616037	78	28113	354	2									
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9089241	9089241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	C	9089241	A	C	9089241	3	2	477	1	0	0	0	0	1	0	0	0	9980	330	12	5	41285	5	MUC16	19	9089241	Missense_Mutation	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	4576295	9089241	50039742	79	28114											
LPHN1	22859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14268697	14268697	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	14268697	C	G	14268697	3	3	477	1	0	0	0	0	1	0	0	0	8922	912	32	4	1921	4	LPHN1	19	14268697	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	5179456	14268697	44860286	80	28115											
SBSN	374897	hgsc.bcm.edu	37	19	36018434	36018434	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	36018434	C	T	36018434	2	4	477	1	0	0	0	0	0	0	0	1	13877	639	23	1		1	SBSN	19	36018434	Silent	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	21749737	36018434	23110549	81	28116											
FCGBP	8857	broad.mit.edu	37	19	40363154	40363154	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	40363154	A	A	40363154	3	1	477	1	0	0	0	0	1	0	0	0	5785	478	17	4	1321	4	FCGBP	19	40363154	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10	4344720	40363154	18765829	82	28117											
GNAS	2778	hgsc.bcm.edu	37	20	57428889	57428889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	57428889	G	A	57428889	3	1	477	1	0	0	0	0	1	0	0	0	6517	1261	44	2	1313	2	GNAS	20	57428889	Missense_Mutation	SNP	G	TCGA-CJ-4644-01A-02D-1386-10		57428889	5596631	83	28118											
ADRM1	11047	hgsc.bcm.edu;ucsc.edu	37	20	60883769	60883770	+	In_Frame_Ins	INS	-	-	GACACGAAG	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	GACACGAAG	60883770	-	GACACGAAG	60883769	7	5	477	1	0	1	1	0	0	0	0	0	345	755	27	0	1210	0	ADRM1	20	60883769	In_Frame_Ins	INS	-	TCGA-CJ-4644-01A-02D-1386-10	3454880	60883769	2141751	84	28119											
VCX2	51480	hgsc.bcm.edu	37	X	8138170	8138170	+	Missense_Mutation	SNP	C	C	G	rs75657421	byfrequency;by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	8138170	C	G	8138170	3	3	477	1	0	0	0	0	1	0	0	0	17155	797	28	4	100	4	VCX2	23	8138170	Missense_Mutation	SNP	C	TCGA-CJ-4644-01A-02D-1386-10		8138170	147132390	85	28120											
TCEAL3	85012	hgsc.bcm.edu	37	X	102864334	102864334	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	A	102864334	G	A	102864334	2	1	477	1	0	0	0	0	0	0	0	1	15684	1103	39	1		1	TCEAL3	23	102864334	Silent	SNP	G	TCGA-CJ-4644-01A-02D-1386-10	94726164	102864334	52406226	86	28121											
ALG13	79868	hgsc.bcm.edu	37	X	110987996	110987996	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	T	110987996	A	T	110987996	2	4	477	1	0	0	0	0	0	0	0	1	515	146	6	5		5	ALG13	23	110987996	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	8123662	110987996	44282564	87	28122											
CXorf40B	541578	hgsc.bcm.edu	37	X	149102006	149102006	+	Silent	SNP	A	A	G	rs626113	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CJ-4644-01A-02D-1386-10	TCGA-CJ-4644-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2f2888fb-ae20-4347-87dc-f0eeeeb9b0d5	2c245ee8-d654-497e-b55f-6ecaf733379d	G	149102006	A	G	149102006	2	3	477	1	0	0	0	0	0	0	0	1	4111	291	11	3		3	CXorf40B	23	149102006	Silent	SNP	A	TCGA-CJ-4644-01A-02D-1386-10	38114010	149102006	6168554	88	28123											
TRIT1	54802	hgsc.bcm.edu;ucsc.edu	37	1	40323055	40323055	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	C	40323055	A	C	40323055	3	2	478	1	0	0	0	0	1	0	0	0	16572	43	2	5	1234	5	TRIT1	1	40323055	Missense_Mutation	SNP	A	TCGA-CJ-4868-01A-01D-1373-10		40323055	208927566	1	28124											
LASS2	0	hgsc.bcm.edu;ucsc.edu	37	1	150938648	150938648	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	G	150938648	A	G	150938648	2	3	478	1	0	0	0	0	0	0	0	1	8646	446	16	3		3	LASS2	1	150938648	Silent	SNP	A	TCGA-CJ-4868-01A-01D-1373-10	110615593	150938648	98311973	2	28125											
TNR	7143	hgsc.bcm.edu	37	1	175355248	175355248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	T	175355248	G	T	175355248	3	4	478	1	0	0	0	0	1	0	0	0	16350	1000	35	4	2443	4	TNR	1	175355248	Missense_Mutation	SNP	G	TCGA-CJ-4868-01A-01D-1373-10	24416600	175355248	73895373	3	28126											
STAMBP	10617	hgsc.bcm.edu	37	2	74074605	74074605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	T	74074605	A	T	74074605	3	4	478	1	0	0	0	0	1	0	0	0	15262	130	5	5	481	5	STAMBP	2	74074605	Missense_Mutation	SNP	A	TCGA-CJ-4868-01A-01D-1373-10		74074605	169124768	4	28127											
KIAA1310	0	hgsc.bcm.edu	37	2	97278028	97278028	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	T	97278028	C	T	97278028	2	4	478	1	0	0	0	0	0	0	0	1	8229	581	21	2		2	KIAA1310	2	97278028	Silent	SNP	C	TCGA-CJ-4868-01A-01D-1373-10	23203423	97278028	145921345	5	28128											
TGFBRAP1	9392	hgsc.bcm.edu	37	2	105924721	105924721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	G	105924721	A	G	105924721	3	3	478	1	0	0	0	0	1	0	0	0	15836	159	6	3	2588	3	TGFBRAP1	2	105924721	Missense_Mutation	SNP	A	TCGA-CJ-4868-01A-01D-1373-10	8646693	105924721	137274652	6	28129											
COL4A3	1285	hgsc.bcm.edu;ucsc.edu	37	2	228163409	228163409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	A	228163409	C	A	228163409	3	1	478	1	0	0	0	0	1	0	0	0	3693	855	30	4	3933	4	COL4A3	2	228163409	Missense_Mutation	SNP	C	TCGA-CJ-4868-01A-01D-1373-10	122238688	228163409	15035964	7	28130											
DLEC1	9940	hgsc.bcm.edu	37	3	38139264	38139264	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	A	38139264	C	A	38139264	2	1	478	1	0	0	0	0	0	0	0	1	4554	610	22	4		4	DLEC1	3	38139264	Silent	SNP	C	TCGA-CJ-4868-01A-01D-1373-10		38139264	159883166	8	28131											
LAMB2	3913	hgsc.bcm.edu	37	3	49159423	49159423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	T	49159423	C	T	49159423	3	4	478	1	0	0	0	0	1	0	0	0	8618	652	23	1	535	1	LAMB2	3	49159423	Missense_Mutation	SNP	C	TCGA-CJ-4868-01A-01D-1373-10	11020159	49159423	148863007	9	28132											
DRD3	1814	hgsc.bcm.edu	37	3	113890723	113890723	+	Silent	SNP	G	G	T	rs149122773	alternate_allele	TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	T	113890723	G	T	113890723	2	4	478	1	0	0	0	0	0	0	0	1	4760	1277	45	4		4	DRD3	3	113890723	Silent	SNP	G	TCGA-CJ-4868-01A-01D-1373-10	64731300	113890723	84131707	10	28133											
SERPINI2	5276	hgsc.bcm.edu;ucsc.edu	37	3	167167125	167167125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	C	167167125	T	C	167167125	3	2	478	1	0	0	0	0	1	0	0	0	14132	1522	53	3	199	3	SERPINI2	3	167167125	Missense_Mutation	SNP	T	TCGA-CJ-4868-01A-01D-1373-10	53276402	167167125	30855305	11	28134											
DAPP1	27071	hgsc.bcm.edu	37	4	100738085	100738085	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	G	100738085	A	G	100738085	2	3	478	1	0	0	0	0	0	0	0	1	4241	40	2	3		3	DAPP1	4	100738085	Silent	SNP	A	TCGA-CJ-4868-01A-01D-1373-10		100738085	90416191	12	28135											
DNAH5	1767	hgsc.bcm.edu;ucsc.edu	37	5	13883135	13883135	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	A	13883135	T	A	13883135	3	1	478	1	0	0	0	0	1	0	0	0	4606	1464	51	5	11062	5	DNAH5	5	13883135	Missense_Mutation	SNP	T	TCGA-CJ-4868-01A-01D-1373-10		13883135	167032125	13	28136											
PRSS16	10279	hgsc.bcm.edu	37	6	27216900	27216900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	T	27216900	C	T	27216900	3	4	478	1	0	0	0	0	1	0	0	0	12626	594	21	2	373	2	PRSS16	6	27216900	Missense_Mutation	SNP	C	TCGA-CJ-4868-01A-01D-1373-10		27216900	143898167	14	28137											
IRAK1BP1	134728	hgsc.bcm.edu;ucsc.edu	37	6	79607672	79607672	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	G	79607672	C	G	79607672	3	3	478	1	0	0	0	0	1	0	0	0	7829	913	32	4	518	4	IRAK1BP1	6	79607672	Missense_Mutation	SNP	C	TCGA-CJ-4868-01A-01D-1373-10	52390772	79607672	91507395	15	28138											
EGFR	1956	hgsc.bcm.edu	37	7	55259454	55259454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	A	55259454	C	A	55259454	3	1	478	1	0	0	0	0	1	0	0	0	4969	680	24	4	2858	4	EGFR	7	55259454	Missense_Mutation	SNP	C	TCGA-CJ-4868-01A-01D-1373-10		55259454	103879209	16	28139											
UNC5D	137970	hgsc.bcm.edu;ucsc.edu	37	8	35647991	35647991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	T	35647991	G	T	35647991	3	4	478	1	0	0	0	0	1	0	0	0	17007	933	33	4	2838	4	UNC5D	8	35647991	Missense_Mutation	SNP	G	TCGA-CJ-4868-01A-01D-1373-10		35647991	110716031	17	28140											
CUBN	8029	hgsc.bcm.edu	37	10	17169882	17169882	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	G	17169882	A	G	17169882	2	3	478	1	0	0	0	0	0	0	0	1	4053	156	6	3		3	CUBN	10	17169882	Silent	SNP	A	TCGA-CJ-4868-01A-01D-1373-10		17169882	118364865	18	28141											
CD151	977	hgsc.bcm.edu	37	11	837500	837500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	G	837500	A	G	837500	3	3	478	1	0	0	0	0	1	0	0	0	2967	275	10	3	515	3	CD151	11	837500	Missense_Mutation	SNP	A	TCGA-CJ-4868-01A-01D-1373-10		837500	134169016	19	28142											
GUCY1A2	2977	hgsc.bcm.edu;ucsc.edu	37	11	106558323	106558323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	A	106558323	C	A	106558323	3	1	478	1	0	0	0	0	1	0	0	0	6900	680	24	4	51	4	GUCY1A2	11	106558323	Missense_Mutation	SNP	C	TCGA-CJ-4868-01A-01D-1373-10	105720823	106558323	28448193	20	28143											
SPATA8	145946	hgsc.bcm.edu	37	15	97328235	97328235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	T	97328235	G	T	97328235	3	4	478	1	0	0	0	0	1	0	0	0	15027	1377	48	4	216	4	SPATA8	15	97328235	Missense_Mutation	SNP	G	TCGA-CJ-4868-01A-01D-1373-10		97328235	5203157	21	28144											
C20orf70	0	hgsc.bcm.edu;ucsc.edu	37	20	31761897	31761897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	A	31761897	C	A	31761897	3	1	478	1	0	0	0	0	1	0	0	0	2118	709	25	4	325	4	C20orf70	20	31761897	Missense_Mutation	SNP	C	TCGA-CJ-4868-01A-01D-1373-10		31761897	31263623	22	28145											
MANBAL	63905	hgsc.bcm.edu	37	20	35929689	35929692	+	Frame_Shift_Del	DEL	CACC	CACC	-	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	CACC	CACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	-	35929692	CACC	-	35929689	7	5	478	1	0	1	0	1	0	0	0	0	9227	838	29	0	25	0	MANBAL	20	35929689	Frame_Shift_Del	DEL	CACC	TCGA-CJ-4868-01A-01D-1373-10	4167792	35929689	27095831	23	28146											
CXorf23	256643	hgsc.bcm.edu	37	X	19971168	19971168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4868-01A-01D-1373-10	TCGA-CJ-4868-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3e85207c-5e77-480a-969e-9c891ed5b429	22ab8db8-133d-471f-b436-055c6bfd3b19	C	19971168	T	C	19971168	3	2	478	1	0	0	0	0	1	0	0	0	4105	1565	54	3	505	3	CXorf23	23	19971168	Missense_Mutation	SNP	T	TCGA-CJ-4868-01A-01D-1373-10		19971168	135299392	24	28147											
RRAGC	64121	broad.mit.edu	37	1	39321416	39321416	+	Missense_Mutation	SNP	T	T	C			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	39321416	T	C	39321416	3	2	479	1	0	0	0	0	1	0	0	0	13687	1667	58	3	614	3	RRAGC	1	39321416	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08		39321416	209929205	1	28148											
PTPRF	5792	broad.mit.edu	37	1	44035299	44035299	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	44035299	G	T	44035299	3	4	479	1	0	0	0	0	1	0	0	0	12814	1232	43	4	432	4	PTPRF	1	44035299	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	4713883	44035299	205215322	2	28149											
UROD	7389	broad.mit.edu	37	1	45480162	45480162	+	Missense_Mutation	SNP	A	A	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	45480162	A	G	45480162	3	3	479	1	0	0	0	0	1	0	0	0	17041	130	5	3	714	3	UROD	1	45480162	Missense_Mutation	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	1444863	45480162	203770459	3	28150											
WDR47	22911	broad.mit.edu	37	1	109554274	109554274	+	Missense_Mutation	SNP	C	C	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	109554274	C	G	109554274	3	3	479	1	0	0	0	0	1	0	0	0	17312	913	32	4	2412	4	WDR47	1	109554274	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	64074112	109554274	139696347	4	28151											
TXNIP	10628	broad.mit.edu	37	1	145440991	145440991	+	Missense_Mutation	SNP	G	G	C	rs150987946	byFrequency	TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	145440991	G	C	145440991	3	2	479	1	0	0	0	0	1	0	0	0	16815	942	33	4	1104	4	TXNIP	1	145440991	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	35886717	145440991	103809630	5	28152											
GPR89A	653519	broad.mit.edu	37	1	145788844	145788844	+	Missense_Mutation	SNP	T	T	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	145788844	T	G	145788844	3	3	479	1	0	0	0	0	1	0	0	0	6725	1406	49	5	652	5	GPR89A	1	145788844	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08	347853	145788844	103461777	6	28153											
NTRK1	4914	broad.mit.edu	37	1	156836721	156836721	+	Missense_Mutation	SNP	C	C	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	156836721	C	G	156836721	3	3	479	1	0	0	0	0	1	0	0	0	10713	912	32	4	523	4	NTRK1	1	156836721	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	11047877	156836721	92413900	7	28154											
TADA1	117143	broad.mit.edu	37	1	166826832	166826832	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	166826832	G	A	166826832	3	1	479	1	0	0	0	0	1	0	0	0	15521	1319	46	2	31	2	TADA1	1	166826832	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	9990111	166826832	82423789	8	28155											
C1orf227	149643	broad.mit.edu	37	1	213009452	213009453	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	213009453	-	T	213009452	7	5	479	1	0	1	1	0	0	0	0	0	2035	1377	48	0	264	0	C1orf227	1	213009452	Frame_Shift_Ins	INS	-	TCGA-CJ-4869-01A-02D-1429-08	46182620	213009452	36241169	9	28156											
PROX1	5629	broad.mit.edu	37	1	214170392	214170392	+	Missense_Mutation	SNP	A	A	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	214170392	A	T	214170392	3	4	479	1	0	0	0	0	1	0	0	0	12570	449	16	5	516	5	PROX1	1	214170392	Missense_Mutation	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	1160940	214170392	35080229	10	28157											
IARS2	55699	broad.mit.edu	37	1	220284279	220284279	+	Splice_Site	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	220284279	G	T	220284279	5	4	479	1	0	0	0	0	0	0	1	0	7481	1014	35	4	1521	4	IARS2	1	220284279	Splice_Site	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	6113887	220284279	28966342	11	28158											
SPTBN1	6711	broad.mit.edu	37	2	54880792	54880792	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	54880792	C	T	54880792	3	4	479	1	0	0	0	0	1	0	0	0	15131	768	27	1	5839	1	SPTBN1	2	54880792	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08		54880792	188318581	12	28159											
RGPD3	653489	broad.mit.edu	37	2	107041102	107041102	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	-	107041102	T	-	107041102	7	5	479	1	0	1	0	1	0	0	0	0	13300	1606	56	0	1971	0	RGPD3	2	107041102	Frame_Shift_Del	DEL	T	TCGA-CJ-4869-01A-02D-1429-08	52160310	107041102	136158271	13	28160											
CLASP1	23332	broad.mit.edu	37	2	122363357	122363357	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	122363357	C	T	122363357	3	4	479	1	0	0	0	0	1	0	0	0	3456	826	29	2	4709	2	CLASP1	2	122363357	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	15322255	122363357	120836016	14	28161											
TTN	7273	broad.mit.edu	37	2	179462404	179462404	+	Missense_Mutation	SNP	T	T	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	179462404	T	A	179462404	3	1	479	1	0	0	0	0	1	0	0	0	16747	1606	56	5		5	TTN	2	179462404	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08	57099047	179462404	63736969	15	28162											
SGOL2	151246	broad.mit.edu	37	2	201434403	201434403	+	Missense_Mutation	SNP	A	A	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	201434403	A	G	201434403	3	3	479	1	0	0	0	0	1	0	0	0	14230	101	4	3	509	3	SGOL2	2	201434403	Missense_Mutation	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	21971999	201434403	41764970	16	28163											
SP140	11262	broad.mit.edu	37	2	231150512	231150512	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	231150512	C	T	231150512	3	4	479	1	0	0	0	0	1	0	0	0	14975	768	27	1	1793	1	SP140	2	231150512	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	29716109	231150512	12048861	17	28164											
JAGN1	84522	broad.mit.edu	37	3	9934835	9934835	+	Missense_Mutation	SNP	T	T	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	9934835	T	A	9934835	3	1	479	1	0	0	0	0	1	0	0	0	7943	1551	54	5	332	5	JAGN1	3	9934835	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08		9934835	188087595	18	28165											
BAP1	8314	broad.mit.edu	37	3	52439196	52439196	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	-	52439196	T	-	52439196	7	5	479	1	0	1	0	1	0	0	0	0	1311	1725	60	0	1171	0	BAP1	3	52439196	Frame_Shift_Del	DEL	T	TCGA-CJ-4869-01A-02D-1429-08	42504361	52439196	145583234	19	28166											
ZBTB11	27107	broad.mit.edu	37	3	101378845	101378846	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	-	101378846	CA	-	101378845	7	5	479	1	0	1	0	1	0	0	0	0	17536	710	25	0	1357	0	ZBTB11	3	101378845	Frame_Shift_Del	DEL	CA	TCGA-CJ-4869-01A-02D-1429-08	48939649	101378845	96643585	20	28167											
GOLGB1	2804	broad.mit.edu	37	3	121415881	121415881	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	121415881	C	T	121415881	4	4	479	1	0	0	0	0	0	1	0	0	6572	856	30	2	6345	2	GOLGB1	3	121415881	Nonsense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	20037036	121415881	76606549	21	28168	355	2									
GOLGB1	2804	broad.mit.edu	37	3	121415891	121415891	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	121415891	C	T	121415891	3	4	479	1	0	0	0	0	1	0	0	0	6572	565	20	2	6355	2	GOLGB1	3	121415891	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	10	121415891	76606539	22	28169	355	2									
KLHL24	54800	broad.mit.edu	37	3	183381405	183381407	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	-	183381407	TCT	-	183381405	7	5	479	1	0	1	0	1	0	0	0	0	8386	1538	54	0	1086	0	KLHL24	3	183381405	In_Frame_Del	DEL	TCT	TCGA-CJ-4869-01A-02D-1429-08	61965514	183381405	14641025	23	28170											
PPBP	5473	broad.mit.edu	37	4	74853010	74853010	+	Silent	SNP	T	T	C			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	74853010	T	C	74853010	2	2	479	1	0	0	0	0	0	0	0	1	12310	1567	55	3		3	PPBP	4	74853010	Silent	SNP	T	TCGA-CJ-4869-01A-02D-1429-08		74853010	116301266	24	28171											
CXXC4	80319	broad.mit.edu	37	4	105412438	105412439	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	TT	105412439	-	TT	105412438	7	5	479	1	0	1	1	0	0	0	0	0	4100	1136	40	0	589	0	CXXC4	4	105412438	Frame_Shift_Ins	INS	-	TCGA-CJ-4869-01A-02D-1429-08	30559428	105412438	85741838	25	28172											
FAT4	79633	broad.mit.edu	37	4	126242308	126242308	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	126242308	G	T	126242308	3	4	479	1	0	0	0	0	1	0	0	0	5699	1029	36	4	4744	4	FAT4	4	126242308	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	20829870	126242308	64911968	26	28173											
LRBA	987	broad.mit.edu	37	4	151656456	151656456	+	Missense_Mutation	SNP	A	A	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	151656456	A	T	151656456	3	4	479	1	0	0	0	0	1	0	0	0	8938	188	7	5	2975	5	LRBA	4	151656456	Missense_Mutation	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	25414148	151656456	39497820	27	28174											
BRD9	65980	broad.mit.edu	37	5	864655	864655	+	Silent	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	864655	C	T	864655	2	4	479	1	0	0	0	0	0	0	0	1	1509	796	28	2		2	BRD9	5	864655	Silent	SNP	C	TCGA-CJ-4869-01A-02D-1429-08		864655	180050605	28	28175											
SLC6A19	340024	broad.mit.edu	37	5	1214127	1214129	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	-	1214129	CTT	-	1214127	7	5	479	1	0	1	0	1	0	0	0	0	14695	668	24	0	856	0	SLC6A19	5	1214127	In_Frame_Del	DEL	CTT	TCGA-CJ-4869-01A-02D-1429-08	349472	1214127	179701133	29	28176											
MARCH11	441061	broad.mit.edu	37	5	16067810	16067810	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	16067810	C	T	16067810	3	4	479	1	0	0	0	0	1	0	0	0	9307	797	28	2	233	2	MARCH11	5	16067810	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	14853683	16067810	164847450	30	28177											
BDP1	55814	broad.mit.edu	37	5	70798507	70798507	+	Silent	SNP	G	G	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	70798507	G	A	70798507	2	1	479	1	0	0	0	0	0	0	0	1	1395	962	34	2		2	BDP1	5	70798507	Silent	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	54730697	70798507	110116753	31	28178											
HSPA4	3308	broad.mit.edu	37	5	132439651	132439651	+	Missense_Mutation	SNP	T	T	C			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	132439651	T	C	132439651	3	2	479	1	0	0	0	0	1	0	0	0	7419	1580	55	3	2322	3	HSPA4	5	132439651	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08	61641144	132439651	48475609	32	28179											
REV3L	5980	broad.mit.edu	37	6	111709251	111709251	+	Missense_Mutation	SNP	T	T	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	111709251	T	A	111709251	3	1	479	1	0	0	0	0	1	0	0	0	13253	1490	52	5	8592	5	REV3L	6	111709251	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08		111709251	59405816	33	28180											
ROS1	6098	broad.mit.edu	37	6	117704636	117704636	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	117704636	G	T	117704636	3	4	479	1	0	0	0	0	1	0	0	0	13544	1368	48	4	4815	4	ROS1	6	117704636	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	5995385	117704636	53410431	34	28181											
HERPUD2	64224	broad.mit.edu	37	7	35678029	35678029	+	Missense_Mutation	SNP	T	T	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	35678029	T	G	35678029	3	3	479	1	0	0	0	0	1	0	0	0	7071	1406	49	5	688	5	HERPUD2	7	35678029	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08		35678029	123460634	35	28182											
VWC2	375567	broad.mit.edu	37	7	49842426	49842426	+	Silent	SNP	C	C	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	49842426	C	A	49842426	2	1	479	1	0	0	0	0	0	0	0	1	17255	903	32	4		4	VWC2	7	49842426	Silent	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	14164397	49842426	109296237	36	28183											
SAMD9	54809	broad.mit.edu	37	7	92732890	92732890	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	92732890	G	T	92732890	3	4	479	1	0	0	0	0	1	0	0	0	13839	1174	41	4	2252	4	SAMD9	7	92732890	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	42890464	92732890	66405773	37	28184											
KLHDC10	23008	broad.mit.edu	37	7	129769357	129769357	+	Missense_Mutation	SNP	G	G	C			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	129769357	G	C	129769357	3	2	479	1	0	0	0	0	1	0	0	0	8362	1261	44	4	1094	4	KLHDC10	7	129769357	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	37036467	129769357	29369306	38	28185											
GPR124	25960	broad.mit.edu	37	8	37699044	37699044	+	Missense_Mutation	SNP	T	T	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	37699044	T	A	37699044	3	1	479	1	0	0	0	0	1	0	0	0	6645	1551	54	5	3241	5	GPR124	8	37699044	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08		37699044	108664978	39	28186											
SULF1	23213	broad.mit.edu	37	8	70501331	70501331	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	70501331	C	T	70501331	3	4	479	1	0	0	0	0	1	0	0	0	15382	838	29	2	703	2	SULF1	8	70501331	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	32802287	70501331	75862691	40	28187											
SLC10A5	347051	broad.mit.edu	37	8	82606469	82606469	+	Missense_Mutation	SNP	G	G	C			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	82606469	G	C	82606469	3	2	479	1	0	0	0	0	1	0	0	0	14390	933	33	4	579	4	SLC10A5	8	82606469	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	12105138	82606469	63757553	41	28188											
COL14A1	7373	broad.mit.edu	37	8	121228653	121228653	+	Missense_Mutation	SNP	C	C	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	121228653	C	A	121228653	3	1	479	1	0	0	0	0	1	0	0	0	3673	507	18	4	1711	4	COL14A1	8	121228653	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	38622184	121228653	25135369	42	28189											
TRPM6	140803	broad.mit.edu	37	9	77377717	77377717	+	Silent	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	77377717	C	T	77377717	2	4	479	1	0	0	0	0	0	0	0	1	16602	726	26	2		2	TRPM6	9	77377717	Silent	SNP	C	TCGA-CJ-4869-01A-02D-1429-08		77377717	63835714	43	28190											
FAM120AOS	158293	broad.mit.edu	37	9	96212845	96212845	+	Silent	SNP	A	A	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	96212845	A	G	96212845	2	3	479	1	0	0	0	0	0	0	0	1	5420	175	7	3		3	FAM120AOS	9	96212845	Silent	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	18835128	96212845	45000586	44	28191											
TBC1D2	55357	broad.mit.edu	37	9	101017592	101017592	+	Translation_Start_Site	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	101017592	G	T	101017592	1	4	479	1	0	0	0	0	0	0	0	0	15620	962	34	4		4	TBC1D2	9	101017592	Translation_Start_Site	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	4804747	101017592	40195839	45	28192											
RGS3	5998	broad.mit.edu	37	9	116356444	116356444	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	116356444	C	T	116356444	3	4	479	1	0	0	0	0	1	0	0	0	13319	797	28	2	3664	2	RGS3	9	116356444	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	15338852	116356444	24856987	46	28193											
TNC	3371	broad.mit.edu	37	9	117852928	117852928	+	Missense_Mutation	SNP	T	T	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	117852928	T	A	117852928	3	1	479	1	0	0	0	0	1	0	0	0	16282	1551	54	5	6343	5	TNC	9	117852928	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08	1496484	117852928	23360503	47	28194											
VIM	7431	broad.mit.edu	37	10	17277297	17277297	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	17277297	C	T	17277297	3	4	479	1	0	0	0	0	1	0	0	0	17178	681	24	2	1160	2	VIM	10	17277297	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08		17277297	118257450	48	28195											
ANK3	288	broad.mit.edu	37	10	61874052	61874052	+	Missense_Mutation	SNP	A	A	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	61874052	A	G	61874052	3	3	479	1	0	0	0	0	1	0	0	0	622	72	3	3	10639	3	ANK3	10	61874052	Missense_Mutation	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	44596755	61874052	73660695	49	28196											
TDRD1	56165	broad.mit.edu	37	10	115973103	115973103	+	Splice_Site	SNP	A	A	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	115973103	A	T	115973103	5	4	479	1	0	0	0	0	0	0	1	0	15742	434	15	5	1884	5	TDRD1	10	115973103	Splice_Site	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	54099051	115973103	19561644	50	28197											
MUC2	4583	broad.mit.edu	37	11	1080916	1080916	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	1080916	C	T	1080916	3	4	479	1	0	0	0	0	1	0	0	0	9982	623	22	2	1338	2	MUC2	11	1080916	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08		1080916	133925600	51	28198											
C11orf16	56673	broad.mit.edu	37	11	8948531	8948531	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	8948531	G	T	8948531	3	4	479	1	0	0	0	0	1	0	0	0	1633	1000	35	4	900	4	C11orf16	11	8948531	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	7867615	8948531	126057985	52	28199											
ABCC8	6833	broad.mit.edu	37	11	17474797	17474797	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	-	17474797	G	-	17474797	7	5	479	1	0	1	0	1	0	0	0	0	58	1357	47	0	3832	0	ABCC8	11	17474797	Frame_Shift_Del	DEL	G	TCGA-CJ-4869-01A-02D-1429-08	8526266	17474797	117531719	53	28200											
SLC5A12	159963	broad.mit.edu	37	11	26734236	26734236	+	Missense_Mutation	SNP	G	G	C			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	26734236	G	C	26734236	3	2	479	1	0	0	0	0	1	0	0	0	14677	1281	45	4	1555	4	SLC5A12	11	26734236	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	9259439	26734236	108272280	54	28201											
PGR	5241	broad.mit.edu	37	11	100909954	100909954	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	100909954	G	A	100909954	3	1	479	1	0	0	0	0	1	0	0	0	11812	1115	39	1	110	1	PGR	11	100909954	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	74175718	100909954	34096562	55	28202											
BCL9L	283149	broad.mit.edu	37	11	118769210	118769210	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	118769210	G	A	118769210	3	1	479	1	0	0	0	0	1	0	0	0	1382	1348	47	2	89	2	BCL9L	11	118769210	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	17859256	118769210	16237306	56	28203											
CACNA1C	775	broad.mit.edu	37	12	2706417	2706417	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	-	2706417	G	-	2706417	7	5	479	1	0	1	0	1	0	0	0	0	2542	1377	48	0	3005	0	CACNA1C	12	2706417	Frame_Shift_Del	DEL	G	TCGA-CJ-4869-01A-02D-1429-08		2706417	131145478	57	28204											
LRMP	4033	broad.mit.edu	37	12	25232608	25232608	+	Missense_Mutation	SNP	T	T	A	rs147316104		TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	25232608	T	A	25232608	3	1	479	1	0	0	0	0	1	0	0	0	8957	1580	55	5	169	5	LRMP	12	25232608	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08	22526191	25232608	108619287	58	28205											
RPAP3	79657	broad.mit.edu	37	12	48063952	48063952	+	Silent	SNP	T	T	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	48063952	T	G	48063952	2	3	479	1	0	0	0	0	0	0	0	1	13556	1799	63	5		5	RPAP3	12	48063952	Silent	SNP	T	TCGA-CJ-4869-01A-02D-1429-08	22831344	48063952	85787943	59	28206											
DIP2B	57609	broad.mit.edu	37	12	51089695	51089695	+	Missense_Mutation	SNP	A	A	C			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	51089695	A	C	51089695	3	2	479	1	0	0	0	0	1	0	0	0	4530	301	11	5	1940	5	DIP2B	12	51089695	Missense_Mutation	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	3025743	51089695	82762200	60	28207											
ITGA7	3679	broad.mit.edu	37	12	56078890	56078890	+	Silent	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	56078890	C	T	56078890	2	4	479	1	0	0	0	0	0	0	0	1	7888	726	26	2		2	ITGA7	12	56078890	Silent	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	4989195	56078890	77773005	61	28208											
METAP2	10988	broad.mit.edu	37	12	95888731	95888731	+	Splice_Site	SNP	A	A	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	95888731	A	T	95888731	5	4	479	1	0	0	0	0	0	0	1	0	9494	434	15	5	611	5	METAP2	12	95888731	Splice_Site	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	39809841	95888731	37963164	62	28209											
EP400	57634	broad.mit.edu	37	12	132554124	132554124	+	Missense_Mutation	SNP	A	A	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	132554124	A	G	132554124	3	3	479	1	0	0	0	0	1	0	0	0	5151	391	14	3	9154	3	EP400	12	132554124	Missense_Mutation	SNP	A	TCGA-CJ-4869-01A-02D-1429-08	36665393	132554124	1297771	63	28210											
RFXAP	5994	broad.mit.edu	37	13	37401839	37401839	+	Missense_Mutation	SNP	T	T	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	37401839	T	G	37401839	3	3	479	1	0	0	0	0	1	0	0	0	13283	1432	50	5	778	5	RFXAP	13	37401839	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08		37401839	77768039	64	28211											
MYO16	23026	broad.mit.edu	37	13	109792688	109792688	+	Missense_Mutation	SNP	C	C	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	109792688	C	A	109792688	3	1	479	1	0	0	0	0	1	0	0	0	10071	738	26	4	4184	4	MYO16	13	109792688	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	72390849	109792688	5377190	65	28212											
OCA2	4948	broad.mit.edu	37	15	28230225	28230225	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	28230225	G	T	28230225	3	4	479	1	0	0	0	0	1	0	0	0	10822	1145	40	4	1215	4	OCA2	15	28230225	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08		28230225	74301167	66	28213											
CCPG1	9236	broad.mit.edu	37	15	55652554	55652554	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	55652554	C	T	55652554	3	4	479	1	0	0	0	0	1	0	0	0	2940	690	24	2	860	2	CCPG1	15	55652554	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	27422329	55652554	46878838	67	28214											
SMG1	23049	broad.mit.edu	37	16	18908185	18908185	+	Missense_Mutation	SNP	A	A	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	18908185	A	T	18908185	3	4	479	1	0	0	0	0	1	0	0	0	14808	98	4	5	11047	5	SMG1	16	18908185	Missense_Mutation	SNP	A	TCGA-CJ-4869-01A-02D-1429-08		18908185	71446568	68	28215											
DOK4	55715	broad.mit.edu	37	16	57508842	57508842	+	Silent	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	57508842	C	T	57508842	2	4	479	1	0	0	0	0	0	0	0	1	4701	564	20	2		2	DOK4	16	57508842	Silent	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	38600657	57508842	32845911	69	28216											
DPEP3	64180	broad.mit.edu	37	16	68009728	68009728	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	68009728	G	T	68009728	4	4	479	1	0	0	0	0	0	1	0	0	4717	1256	44	4	63	4	DPEP3	16	68009728	Nonsense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	10500886	68009728	22345025	70	28217											
ANKRD11	29123	broad.mit.edu	37	16	89348224	89348224	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	89348224	C	T	89348224	3	4	479	1	0	0	0	0	1	0	0	0	639	652	23	1	3285	1	ANKRD11	16	89348224	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	21338496	89348224	1006529	71	28218											
MAPK7	5598	broad.mit.edu	37	17	19284327	19284327	+	Missense_Mutation	SNP	C	C	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	19284327	C	A	19284327	3	1	479	1	0	0	0	0	1	0	0	0	9289	478	17	4	815	4	MAPK7	17	19284327	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08		19284327	61910883	72	28219											
KRT27	342574	broad.mit.edu	37	17	38938401	38938401	+	Missense_Mutation	SNP	C	C	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	38938401	C	A	38938401	3	1	479	1	0	0	0	0	1	0	0	0	8471	912	32	4	1066	4	KRT27	17	38938401	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08	19654074	38938401	42256809	73	28220											
TBX21	30009	broad.mit.edu	37	17	45822521	45822521	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	45822521	G	A	45822521	3	1	479	1	0	0	0	0	1	0	0	0	15669	1116	39	1	1419	1	TBX21	17	45822521	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	6884120	45822521	35372689	74	28221											
GPR142	350383	broad.mit.edu	37	17	72368005	72368005	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	72368005	G	A	72368005	3	1	479	1	0	0	0	0	1	0	0	0	6657	1233	43	2	669	2	GPR142	17	72368005	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	26545484	72368005	8827205	75	28222											
VPS4B	9525	broad.mit.edu	37	18	61064278	61064278	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	61064278	G	T	61064278	3	4	479	1	0	0	0	0	1	0	0	0	17225	1290	45	4	265	4	VPS4B	18	61064278	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08		61064278	17012970	76	28223											
MUC16	94025	broad.mit.edu	37	19	9061452	9061452	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	9061452	G	A	9061452	3	1	479	1	0	0	0	0	1	0	0	0	9980	971	34	2	17857	2	MUC16	19	9061452	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08		9061452	50067531	77	28224											
CCDC151	115948	broad.mit.edu	37	19	11537537	11537537	+	Missense_Mutation	SNP	G	G	C			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	11537537	G	C	11537537	3	2	479	1	0	0	0	0	1	0	0	0	2788	1261	44	4	1143	4	CCDC151	19	11537537	Missense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	2476085	11537537	47591446	78	28225											
C20orf26	26074	broad.mit.edu	37	20	20180478	20180478	+	Missense_Mutation	SNP	C	C	G	rs147638085		TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	20180478	C	G	20180478	3	3	479	1	0	0	0	0	1	0	0	0	2108	528	19	4	1958	4	C20orf26	20	20180478	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08		20180478	42845042	79	28226											
R3HDML	140902	broad.mit.edu	37	20	42979419	42979419	+	Missense_Mutation	SNP	T	T	G			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	G	42979419	T	G	42979419	3	3	479	1	0	0	0	0	1	0	0	0	12902	1783	62	5	767	5	R3HDML	20	42979419	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08	22798941	42979419	20046101	80	28227											
CECR1	51816	broad.mit.edu	37	22	17662885	17662885	+	Missense_Mutation	SNP	T	T	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	17662885	T	A	17662885	3	1	479	1	0	0	0	0	1	0	0	0	3207	1783	62	5	276	5	CECR1	22	17662885	Missense_Mutation	SNP	T	TCGA-CJ-4869-01A-02D-1429-08		17662885	33641681	81	28228											
RS1	6247	broad.mit.edu	37	X	18690181	18690181	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	T	18690181	C	T	18690181	3	4	479	1	0	0	0	0	1	0	0	0	13706	768	27	1	690	1	RS1	23	18690181	Missense_Mutation	SNP	C	TCGA-CJ-4869-01A-02D-1429-08		18690181	136580379	82	28229											
TEX11	56159	broad.mit.edu	37	X	69871375	69871375	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	69871375	G	A	69871375	4	1	479	1	0	0	0	0	0	1	0	0	15786	1153	40	1	1425	1	TEX11	23	69871375	Nonsense_Mutation	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	51181194	69871375	85399185	83	28230											
RLIM	51132	broad.mit.edu	37	X	73811938	73811938	+	Silent	SNP	G	G	C	rs61754468	by1000genomes	TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	C	73811938	G	C	73811938	2	2	479	1	0	0	0	0	0	0	0	1	13403	1335	47	4		4	RLIM	23	73811938	Silent	SNP	G	TCGA-CJ-4869-01A-02D-1429-08	3940563	73811938	81458622	84	28231											
PLAC1	10761	broad.mit.edu	37	X	133700599	133700599	+	Silent	SNP	T	T	A			TCGA-CJ-4869-01A-02D-1429-08	TCGA-CJ-4869-11A-01D-1429-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	43d9e0a3-a4c7-4ee3-a8a9-cea569ebb219	1dc07306-c09f-4d8e-884c-d016908fd841	A	133700599	T	A	133700599	2	1	479	1	0	0	0	0	0	0	0	1	12019	1567	55	5		5	PLAC1	23	133700599	Silent	SNP	T	TCGA-CJ-4869-01A-02D-1429-08	59888661	133700599	21569961	85	28232											
ASAP3	55616	hgsc.bcm.edu	37	1	23756377	23756377	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	23756377	G	C	23756377	3	2	480	1	0	0	0	0	1	0	0	0	1012	1319	46	4	31	4	ASAP3	1	23756377	Missense_Mutation	SNP	G	TCGA-CJ-4870-01A-01D-1373-10		23756377	225494244	1	28233											
ZNF687	57592	hgsc.bcm.edu;ucsc.edu	37	1	151261955	151261955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	151261955	T	G	151261955	3	3	480	1	0	0	0	0	1	0	0	0	18104	1841	64	5	2587	5	ZNF687	1	151261955	Missense_Mutation	SNP	T	TCGA-CJ-4870-01A-01D-1373-10	127505578	151261955	97988666	2	28234											
DDX1	1653	hgsc.bcm.edu	37	2	15746321	15746321	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	15746321	A	C	15746321	2	2	480	1	0	0	0	0	0	0	0	1	4343	146	6	5		5	DDX1	2	15746321	Silent	SNP	A	TCGA-CJ-4870-01A-01D-1373-10		15746321	227453052	3	28235											
FAM179A	165186	hgsc.bcm.edu;ucsc.edu	37	2	29256422	29256422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	29256422	A	G	29256422	3	3	480	1	0	0	0	0	1	0	0	0	5509	131	5	3	2276	3	FAM179A	2	29256422	Missense_Mutation	SNP	A	TCGA-CJ-4870-01A-01D-1373-10	13510101	29256422	213942951	4	28236											
LBH	81606	hgsc.bcm.edu	37	2	30480413	30480413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	30480413	C	T	30480413	3	4	480	1	0	0	0	0	1	0	0	0	8657	623	22	2	254	2	LBH	2	30480413	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10	1223991	30480413	212718960	5	28237											
PPM1B	5495	hgsc.bcm.edu;ucsc.edu	37	2	44429133	44429133	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	44429133	T	A	44429133	2	1	480	1	0	0	0	0	0	0	0	1	12346	1567	55	5		5	PPM1B	2	44429133	Silent	SNP	T	TCGA-CJ-4870-01A-01D-1373-10	13948720	44429133	198770240	6	28238											
MAP2	4133	hgsc.bcm.edu	37	2	210559405	210559405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	210559405	G	C	210559405	3	2	480	1	0	0	0	0	1	0	0	0	9242	933	33	4	2525	4	MAP2	2	210559405	Missense_Mutation	SNP	G	TCGA-CJ-4870-01A-01D-1373-10	166130272	210559405	32639968	7	28239											
SPEG	10290	hgsc.bcm.edu	37	2	220342464	220342464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	220342464	A	G	220342464	3	3	480	1	0	0	0	0	1	0	0	0	15048	63	3	3	4877	3	SPEG	2	220342464	Missense_Mutation	SNP	A	TCGA-CJ-4870-01A-01D-1373-10	9783059	220342464	22856909	8	28240											
OSBPL10	114884	hgsc.bcm.edu	37	3	31712424	31712424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	31712424	C	A	31712424	3	1	480	1	0	0	0	0	1	0	0	0	11282	565	20	4	532	4	OSBPL10	3	31712424	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10		31712424	166310006	9	28241											
IGSF10	285313	hgsc.bcm.edu;ucsc.edu	37	3	151160902	151160902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	151160902	C	T	151160902	3	4	480	1	0	0	0	0	1	0	0	0	7604	797	28	2	2094	2	IGSF10	3	151160902	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10	119448478	151160902	46861528	10	28242											
GPR98	84059	hgsc.bcm.edu;ucsc.edu	37	5	90000251	90000252	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	90000252	-	T	90000251	7	5	480	1	0	1	1	0	0	0	0	0	6728	217	8	0	8474	0	GPR98	5	90000251	Frame_Shift_Ins	INS	-	TCGA-CJ-4870-01A-01D-1373-10		90000251	90915009	11	28243											
ARAP3	64411	hgsc.bcm.edu	37	5	141046056	141046056	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	141046056	G	T	141046056	4	4	480	1	0	0	0	0	0	1	0	0	840	1294	45	4	2195	4	ARAP3	5	141046056	Nonsense_Mutation	SNP	G	TCGA-CJ-4870-01A-01D-1373-10	51045805	141046056	39869204	12	28244											
GEMIN5	25929	hgsc.bcm.edu;ucsc.edu	37	5	154271054	154271054	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	154271054	T	A	154271054	3	1	480	1	0	0	0	0	1	0	0	0	6338	1579	55	5	529	5	GEMIN5	5	154271054	Missense_Mutation	SNP	T	TCGA-CJ-4870-01A-01D-1373-10	13224998	154271054	26644206	13	28245											
POR	5447	hgsc.bcm.edu	37	7	75614139	75614139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	75614139	C	T	75614139	3	4	480	1	0	0	0	0	1	0	0	0	12264	652	23	1	1149	1	POR	7	75614139	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10		75614139	83524524	14	28246											
FOXP2	93986	hgsc.bcm.edu	37	7	114284748	114284748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	114284748	A	T	114284748	3	4	480	1	0	0	0	0	1	0	0	0	6034	217	8	5	1158	5	FOXP2	7	114284748	Missense_Mutation	SNP	A	TCGA-CJ-4870-01A-01D-1373-10	38670609	114284748	44853915	15	28247											
VPS13B	157680	hgsc.bcm.edu	37	8	100133693	100133693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	100133693	G	T	100133693	3	4	480	1	0	0	0	0	1	0	0	0	17202	1377	48	4	1252	4	VPS13B	8	100133693	Missense_Mutation	SNP	G	TCGA-CJ-4870-01A-01D-1373-10		100133693	46230329	16	28248											
ANGPT1	284	hgsc.bcm.edu;ucsc.edu	37	8	108334182	108334182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	108334182	C	A	108334182	3	1	480	1	0	0	0	0	1	0	0	0	610	796	28	4	770	4	ANGPT1	8	108334182	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10	8200489	108334182	38029840	17	28249											
MPDZ	8777	hgsc.bcm.edu	37	9	13192294	13192294	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	13192294	C	G	13192294	3	3	480	1	0	0	0	0	1	0	0	0	9729	521	18	4	4449	4	MPDZ	9	13192294	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10		13192294	128021137	18	28250											
TAF1L	138474	hgsc.bcm.edu;ucsc.edu	37	9	32634567	32634567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	32634567	C	A	32634567	3	1	480	1	0	0	0	0	1	0	0	0	15535	564	20	4	4473	4	TAF1L	9	32634567	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10	19442273	32634567	108578864	19	28251											
FRMPD1	22844	hgsc.bcm.edu	37	9	37740099	37740099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	37740099	A	G	37740099	3	3	480	1	0	0	0	0	1	0	0	0	6064	275	10	3	1628	3	FRMPD1	9	37740099	Missense_Mutation	SNP	A	TCGA-CJ-4870-01A-01D-1373-10	5105532	37740099	103473332	20	28252											
DDX31	64794	hgsc.bcm.edu;ucsc.edu	37	9	135538026	135538026	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	135538026	T	C	135538026	2	2	480	1	0	0	0	0	0	0	0	1	4358	1722	60	3		3	DDX31	9	135538026	Silent	SNP	T	TCGA-CJ-4870-01A-01D-1373-10	97797927	135538026	5675405	21	28253											
PTCHD3	374308	hgsc.bcm.edu;ucsc.edu	37	10	27688016	27688016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	27688016	C	T	27688016	3	4	480	1	0	0	0	0	1	0	0	0	12744	623	22	2	796	2	PTCHD3	10	27688016	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10		27688016	107846731	22	28254											
DYDC1	143241	hgsc.bcm.edu;ucsc.edu	37	10	82112316	82112316	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	82112316	T	G	82112316	3	3	480	1	0	0	0	0	1	0	0	0	4840	1751	61	5	515	5	DYDC1	10	82112316	Missense_Mutation	SNP	T	TCGA-CJ-4870-01A-01D-1373-10	54424300	82112316	53422431	23	28255											
AFAP1L2	84632	hgsc.bcm.edu	37	10	116057098	116057098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	116057098	G	A	116057098	3	1	480	1	0	0	0	0	1	0	0	0	355	1087	38	1	280	1	AFAP1L2	10	116057098	Missense_Mutation	SNP	G	TCGA-CJ-4870-01A-01D-1373-10	33944782	116057098	19477649	24	28256											
MUC2	4583	hgsc.bcm.edu	37	11	1082315	1082315	+	Silent	SNP	C	C	T	rs58179195	byfrequency;by1000genomes	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	1082315	C	T	1082315	2	4	480	1	0	0	0	0	0	0	0	1	9982	842	30	2		2	MUC2	11	1082315	Silent	SNP	C	TCGA-CJ-4870-01A-01D-1373-10		1082315	133924201	25	28257											
CNGA4	1262	hgsc.bcm.edu;ucsc.edu	37	11	6262905	6262905	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	6262905	A	C	6262905	3	2	480	1	0	0	0	0	1	0	0	0	3601	217	8	5	1180	5	CNGA4	11	6262905	Missense_Mutation	SNP	A	TCGA-CJ-4870-01A-01D-1373-10	5180590	6262905	128743611	26	28258											
ZNF214	7761	hgsc.bcm.edu;ucsc.edu	37	11	7022631	7022631	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	7022631	G	C	7022631	3	2	480	1	0	0	0	0	1	0	0	0	17782	1000	35	4	1541	4	ZNF214	11	7022631	Missense_Mutation	SNP	G	TCGA-CJ-4870-01A-01D-1373-10	759726	7022631	127983885	27	28259											
C11orf49	79096	hgsc.bcm.edu	37	11	47185748	47185748	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	47185748	T	A	47185748	3	1	480	1	0	0	0	0	1	0	0	0	1647	1696	59	5	1161	5	C11orf49	11	47185748	Missense_Mutation	SNP	T	TCGA-CJ-4870-01A-01D-1373-10	40163117	47185748	87820768	28	28260											
NUP160	23279	hgsc.bcm.edu;ucsc.edu	37	11	47861527	47861527	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	47861527	C	G	47861527	3	3	480	1	0	0	0	0	1	0	0	0	10764	797	28	4	3826	4	NUP160	11	47861527	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10	675779	47861527	87144989	29	28261											
RIN1	9610	hgsc.bcm.edu	37	11	66100043	66100043	+	Missense_Mutation	SNP	G	G	A	rs2282532	bycluster;byfrequency;by1000genomes	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	66100043	G	A	66100043	3	1	480	1	0	0	0	0	1	0	0	0	13384	1232	43	2	299	2	RIN1	11	66100043	Missense_Mutation	SNP	G	TCGA-CJ-4870-01A-01D-1373-10	18238516	66100043	68906473	30	28262											
MAML2	84441	hgsc.bcm.edu	37	11	95825797	95825797	+	Silent	SNP	A	A	G	rs7931870	bycluster;byfrequency;by1000genomes	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	95825797	A	G	95825797	2	3	480	1	0	0	0	0	0	0	0	1	9213	59	3	3		3	MAML2	11	95825797	Silent	SNP	A	TCGA-CJ-4870-01A-01D-1373-10	29725754	95825797	39180719	31	28263											
TULP3	7289	hgsc.bcm.edu;ucsc.edu	37	12	3047337	3047337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	3047337	C	A	3047337	3	1	480	1	0	0	0	0	1	0	0	0	16787	796	28	4	1119	4	TULP3	12	3047337	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10		3047337	130804558	32	28264											
ABCC9	10060	hgsc.bcm.edu;ucsc.edu	37	12	22065833	22065833	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	22065833	G	T	22065833	2	4	480	1	0	0	0	0	0	0	0	1	59	1219	43	4		4	ABCC9	12	22065833	Silent	SNP	G	TCGA-CJ-4870-01A-01D-1373-10	19018496	22065833	111786062	33	28265											
ANAPC7	51434	hgsc.bcm.edu	37	12	110825591	110825591	+	Silent	SNP	A	A	G	rs61754907	bycluster;byfrequency;by1000genomes	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	110825591	A	G	110825591	2	3	480	1	0	0	0	0	0	0	0	1	606	224	8	3		3	ANAPC7	12	110825591	Silent	SNP	A	TCGA-CJ-4870-01A-01D-1373-10	88759758	110825591	23026304	34	28266											
ZDHHC22	283576	hgsc.bcm.edu	37	14	77605834	77605834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	77605834	G	C	77605834	3	2	480	1	0	0	0	0	1	0	0	0	17625	1059	37	4	551	4	ZDHHC22	14	77605834	Missense_Mutation	SNP	G	TCGA-CJ-4870-01A-01D-1373-10		77605834	29743706	35	28267											
PPP4R4	57718	hgsc.bcm.edu;ucsc.edu	37	14	94697034	94697034	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	94697034	C	A	94697034	2	1	480	1	0	0	0	0	0	0	0	1	12415	842	30	4		4	PPP4R4	14	94697034	Silent	SNP	C	TCGA-CJ-4870-01A-01D-1373-10	17091200	94697034	12652506	36	28268											
SERPINA6	866	hgsc.bcm.edu;ucsc.edu	37	14	94780531	94780531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	94780531	T	A	94780531	3	1	480	1	0	0	0	0	1	0	0	0	14106	1551	54	5	778	5	SERPINA6	14	94780531	Missense_Mutation	SNP	T	TCGA-CJ-4870-01A-01D-1373-10	83497	94780531	12569009	37	28269											
ZNF500	26048	hgsc.bcm.edu	37	16	4812665	4812665	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	4812665	G	A	4812665	2	1	480	1	0	0	0	0	0	0	0	1	17960	1219	43	2		2	ZNF500	16	4812665	Silent	SNP	G	TCGA-CJ-4870-01A-01D-1373-10		4812665	85542088	38	28270											
CENPT	80152	hgsc.bcm.edu	37	16	67863680	67863680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	G	67863680	A	G	67863680	3	3	480	1	0	0	0	0	1	0	0	0	3244	304	11	3	531	3	CENPT	16	67863680	Missense_Mutation	SNP	A	TCGA-CJ-4870-01A-01D-1373-10	63051015	67863680	22491073	39	28271											
C17orf74	201243	hgsc.bcm.edu	37	17	7330114	7330114	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	7330114	G	A	7330114	4	1	480	1	0	0	0	0	0	1	0	0	1881	1241	43	2	814	2	C17orf74	17	7330114	Nonsense_Mutation	SNP	G	TCGA-CJ-4870-01A-01D-1373-10		7330114	73865096	40	28272											
PLEKHH3	79990	hgsc.bcm.edu	37	17	40825443	40825443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	40825443	T	C	40825443	3	2	480	1	0	0	0	0	1	0	0	0	12085	1696	59	3	1795	3	PLEKHH3	17	40825443	Missense_Mutation	SNP	T	TCGA-CJ-4870-01A-01D-1373-10	33495329	40825443	40369767	41	28273											
ANKRD27	84079	hgsc.bcm.edu;ucsc.edu	37	19	33133044	33133044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	33133044	T	C	33133044	3	2	480	1	0	0	0	0	1	0	0	0	655	1464	51	3	2442	3	ANKRD27	19	33133044	Missense_Mutation	SNP	T	TCGA-CJ-4870-01A-01D-1373-10		33133044	25995939	42	28274											
C20orf132	0	hgsc.bcm.edu	37	20	35776260	35776260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	35776260	A	T	35776260	3	4	480	1	0	0	0	0	1	0	0	0	2088	304	11	5	2073	5	C20orf132	20	35776260	Missense_Mutation	SNP	A	TCGA-CJ-4870-01A-01D-1373-10		35776260	27249260	43	28275											
MAGEB2	4113	hgsc.bcm.edu	37	X	30236766	30236766	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	30236766	G	A	30236766	2	1	480	1	0	0	0	0	0	0	0	1	9183	1219	43	2		2	MAGEB2	23	30236766	Silent	SNP	G	TCGA-CJ-4870-01A-01D-1373-10		30236766	125033794	44	28276											
TRO	7216	hgsc.bcm.edu	37	X	54957281	54957281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	C	54957281	T	C	54957281	3	2	480	1	0	0	0	0	1	0	0	0	16586	1725	60	3	4166	3	TRO	23	54957281	Missense_Mutation	SNP	T	TCGA-CJ-4870-01A-01D-1373-10	24720515	54957281	100313279	45	28277											
P2RY10	27334	hgsc.bcm.edu;ucsc.edu	37	X	78216453	78216453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	T	78216453	C	T	78216453	3	4	480	1	0	0	0	0	1	0	0	0	11354	768	27	1	438	1	P2RY10	23	78216453	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10	23259172	78216453	77054107	46	28278											
CCDC160	347475	hgsc.bcm.edu;ucsc.edu	37	X	133378953	133378953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	72fffb6f-a58b-4f05-87fe-ccd28b4babff	80217c32-1ac8-4909-843d-2e351684dc95	A	133378953	C	A	133378953	3	1	480	1	0	0	0	0	1	0	0	0	2794	709	25	4	125	4	CCDC160	23	133378953	Missense_Mutation	SNP	C	TCGA-CJ-4870-01A-01D-1373-10	55162500	133378953	21891607	47	28279											
CAPZB	832	hgsc.bcm.edu	37	1	19683945	19683945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	19683945	A	C	19683945	3	2	481	1	0	0	0	0	1	0	0	0	2645	188	7	5	396	5	CAPZB	1	19683945	Missense_Mutation	SNP	A	TCGA-CJ-4871-01A-01D-1373-10		19683945	229566676	1	28280											
CSMD2	114784	hgsc.bcm.edu	37	1	34312501	34312501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	34312501	G	T	34312501	3	4	481	1	0	0	0	0	1	0	0	0	3947	1281	45	4	9822	4	CSMD2	1	34312501	Missense_Mutation	SNP	G	TCGA-CJ-4871-01A-01D-1373-10	14628556	34312501	214938120	2	28281											
ZSWIM5	57643	hgsc.bcm.edu;ucsc.edu	37	1	45484291	45484291	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	45484291	G	A	45484291	2	1	481	1	0	0	0	0	0	0	0	1	18256	1194	42	2		2	ZSWIM5	1	45484291	Silent	SNP	G	TCGA-CJ-4871-01A-01D-1373-10	11171790	45484291	203766330	3	28282											
ATP1A1	476	hgsc.bcm.edu;ucsc.edu	37	1	116936278	116936278	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	116936278	T	C	116936278	2	2	481	1	0	0	0	0	0	0	0	1	1128	1461	51	3		3	ATP1A1	1	116936278	Silent	SNP	T	TCGA-CJ-4871-01A-01D-1373-10	71451987	116936278	132314343	4	28283											
CRB1	23418	hgsc.bcm.edu;ucsc.edu	37	1	197396821	197396821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	197396821	A	T	197396821	3	4	481	1	0	0	0	0	1	0	0	0	3850	101	4	5	2392	5	CRB1	1	197396821	Missense_Mutation	SNP	A	TCGA-CJ-4871-01A-01D-1373-10	80460543	197396821	51853800	5	28284											
HEATR1	55127	hgsc.bcm.edu;ucsc.edu	37	1	236714231	236714231	+	Missense_Mutation	SNP	G	G	C	rs145439234	alternate_allele	TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	236714231	G	C	236714231	3	2	481	1	0	0	0	0	1	0	0	0	7034	991	35	4	32	4	HEATR1	1	236714231	Missense_Mutation	SNP	G	TCGA-CJ-4871-01A-01D-1373-10	39317410	236714231	12536390	6	28285											
STK11IP	114790	hgsc.bcm.edu	37	2	220467482	220467482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	220467482	G	T	220467482	3	4	481	1	0	0	0	0	1	0	0	0	15300	1377	48	4	661	4	STK11IP	2	220467482	Missense_Mutation	SNP	G	TCGA-CJ-4871-01A-01D-1373-10		220467482	22731891	7	28286											
DOCK10	55619	hgsc.bcm.edu	37	2	225684201	225684201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	225684201	T	A	225684201	3	1	481	1	0	0	0	0	1	0	0	0	4687	1812	63	5	3443	5	DOCK10	2	225684201	Missense_Mutation	SNP	T	TCGA-CJ-4871-01A-01D-1373-10	5216719	225684201	17515172	8	28287											
SH3BP4	23677	hgsc.bcm.edu	37	2	235950909	235950909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	235950909	G	T	235950909	3	4	481	1	0	0	0	0	1	0	0	0	14259	1377	48	4	1502	4	SH3BP4	2	235950909	Missense_Mutation	SNP	G	TCGA-CJ-4871-01A-01D-1373-10	10266708	235950909	7248464	9	28288											
COL7A1	1294	hgsc.bcm.edu	37	3	48623284	48623284	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	48623284	C	T	48623284	2	4	481	1	0	0	0	0	0	0	0	1	3706	912	32	2		2	COL7A1	3	48623284	Silent	SNP	C	TCGA-CJ-4871-01A-01D-1373-10		48623284	149399146	10	28289											
NPRL2	10641	hgsc.bcm.edu	37	3	50387111	50387111	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	G	50387111	A	G	50387111	2	3	481	1	0	0	0	0	0	0	0	1	10604	340	12	3		3	NPRL2	3	50387111	Silent	SNP	A	TCGA-CJ-4871-01A-01D-1373-10	1763827	50387111	147635319	11	28290											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52643504	52643504	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	52643504	T	A	52643504	4	1	481	1	0	0	0	0	0	1	0	0	11498	1617	56	5	2568	5	PBRM1	3	52643504	Nonsense_Mutation	SNP	T	TCGA-CJ-4871-01A-01D-1373-10	2256393	52643504	145378926	12	28291											
FRYL	285527	hgsc.bcm.edu;ucsc.edu	37	4	48542918	48542918	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	G	48542918	C	G	48542918	3	3	481	1	0	0	0	0	1	0	0	0	6071	855	30	4	3370	4	FRYL	4	48542918	Missense_Mutation	SNP	C	TCGA-CJ-4871-01A-01D-1373-10		48542918	142611358	13	28292											
PDZD2	23037	hgsc.bcm.edu;ucsc.edu	37	5	32061215	32061215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	32061215	T	C	32061215	3	2	481	1	0	0	0	0	1	0	0	0	11708	1667	58	3	2476	3	PDZD2	5	32061215	Missense_Mutation	SNP	T	TCGA-CJ-4871-01A-01D-1373-10		32061215	148854045	14	28293											
C5orf23	0	hgsc.bcm.edu;ucsc.edu	37	5	32789785	32789785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	G	32789785	A	G	32789785	3	3	481	1	0	0	0	0	1	0	0	0	2288	14	1	3	280	3	C5orf23	5	32789785	Missense_Mutation	SNP	A	TCGA-CJ-4871-01A-01D-1373-10	728570	32789785	148125475	15	28294											
HSPA4	3308	hgsc.bcm.edu	37	5	132424179	132424179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	132424179	T	A	132424179	3	1	481	1	0	0	0	0	1	0	0	0	7419	1493	52	5	1103	5	HSPA4	5	132424179	Missense_Mutation	SNP	T	TCGA-CJ-4871-01A-01D-1373-10	99634394	132424179	48491081	16	28295											
KCTD16	57528	hgsc.bcm.edu	37	5	143586839	143586839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	G	143586839	A	G	143586839	3	3	481	1	0	0	0	0	1	0	0	0	8110	296	11	3	564	3	KCTD16	5	143586839	Missense_Mutation	SNP	A	TCGA-CJ-4871-01A-01D-1373-10	11162660	143586839	37328421	17	28296											
SEMA3A	10371	hgsc.bcm.edu	37	7	83764187	83764187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	83764187	C	T	83764187	3	4	481	1	0	0	0	0	1	0	0	0	14037	864	30	2	2186	2	SEMA3A	7	83764187	Missense_Mutation	SNP	C	TCGA-CJ-4871-01A-01D-1373-10		83764187	75374476	18	28297											
SNAI2	6591	hgsc.bcm.edu;ucsc.edu	37	8	49833764	49833764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	49833764	C	T	49833764	3	4	481	1	0	0	0	0	1	0	0	0	14840	893	31	1	757	1	SNAI2	8	49833764	Missense_Mutation	SNP	C	TCGA-CJ-4871-01A-01D-1373-10		49833764	96530258	19	28298											
ZNF483	158399	hgsc.bcm.edu;ucsc.edu	37	9	114304001	114304001	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	G	114304001	A	G	114304001	2	3	481	1	0	0	0	0	0	0	0	1	17948	69	3	3		3	ZNF483	9	114304001	Silent	SNP	A	TCGA-CJ-4871-01A-01D-1373-10		114304001	26909430	20	28299											
GPR158	57512	hgsc.bcm.edu;ucsc.edu	37	10	25701402	25701402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	25701402	G	T	25701402	3	4	481	1	0	0	0	0	1	0	0	0	6670	1014	35	4	1349	4	GPR158	10	25701402	Missense_Mutation	SNP	G	TCGA-CJ-4871-01A-01D-1373-10		25701402	109833345	21	28300											
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89690806	89690806	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	89690806	T	A	89690806	4	1	481	1	0	0	0	0	0	1	0	0	12748	1702	59	5	227	5	PTEN	10	89690806	Nonsense_Mutation	SNP	T	TCGA-CJ-4871-01A-01D-1373-10	63989404	89690806	45843941	22	28301											
USP15	9958	hgsc.bcm.edu;ucsc.edu	37	12	62777931	62777931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	62777931	C	A	62777931	3	1	481	1	0	0	0	0	1	0	0	0	17058	681	24	4	1272	4	USP15	12	62777931	Missense_Mutation	SNP	C	TCGA-CJ-4871-01A-01D-1373-10		62777931	71073964	23	28302											
PTPN11	5781	hgsc.bcm.edu;ucsc.edu	37	12	112892409	112892409	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	112892409	T	C	112892409	2	2	481	1	0	0	0	0	0	0	0	1	12791	1596	56	3		3	PTPN11	12	112892409	Silent	SNP	T	TCGA-CJ-4871-01A-01D-1373-10	50114478	112892409	20959486	24	28303											
C12orf43	64897	hgsc.bcm.edu;ucsc.edu	37	12	121444125	121444125	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	G	121444125	A	G	121444125	2	3	481	1	0	0	0	0	0	0	0	1	1691	231	8	3		3	C12orf43	12	121444125	Silent	SNP	A	TCGA-CJ-4871-01A-01D-1373-10	8551716	121444125	12407770	25	28304											
ZMYM2	7750	hgsc.bcm.edu;ucsc.edu	37	13	20656244	20656244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	20656244	G	A	20656244	3	1	481	1	0	0	0	0	1	0	0	0	17712	971	34	2	3620	2	ZMYM2	13	20656244	Missense_Mutation	SNP	G	TCGA-CJ-4871-01A-01D-1373-10		20656244	94513634	26	28305											
CATSPERB	79820	hgsc.bcm.edu;ucsc.edu	37	14	92126245	92126245	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	92126245	A	T	92126245	3	4	481	1	0	0	0	0	1	0	0	0	2693	446	16	5	2034	5	CATSPERB	14	92126245	Missense_Mutation	SNP	A	TCGA-CJ-4871-01A-01D-1373-10		92126245	15223295	27	28306											
MTMR15	0	hgsc.bcm.edu;ucsc.edu	37	15	31206244	31206244	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	31206244	C	T	31206244	2	4	481	1	0	0	0	0	0	0	0	1	9950	489	17	2		2	MTMR15	15	31206244	Silent	SNP	C	TCGA-CJ-4871-01A-01D-1373-10		31206244	71325148	28	28307											
FANCI	55215	hgsc.bcm.edu	37	15	89837146	89837146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	89837146	G	C	89837146	3	2	481	1	0	0	0	0	1	0	0	0	5676	971	34	4	2460	4	FANCI	15	89837146	Missense_Mutation	SNP	G	TCGA-CJ-4871-01A-01D-1373-10	58630902	89837146	12694246	29	28308											
CHD2	1106	hgsc.bcm.edu	37	15	93492306	93492306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	93492306	A	C	93492306	3	2	481	1	0	0	0	0	1	0	0	0	3327	86	3	5	1548	5	CHD2	15	93492306	Missense_Mutation	SNP	A	TCGA-CJ-4871-01A-01D-1373-10	3655160	93492306	9039086	30	28309											
PGPEP1L	145814	hgsc.bcm.edu	37	15	99511807	99511808	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	99511808	-	T	99511807	7	5	481	1	0	1	1	0	0	0	0	0	11811	913	32	0	103	0	PGPEP1L	15	99511807	Frame_Shift_Ins	INS	-	TCGA-CJ-4871-01A-01D-1373-10	6019501	99511807	3019585	31	28310											
CDH3	1001	hgsc.bcm.edu	37	16	68721570	68721570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	68721570	A	C	68721570	3	2	481	1	0	0	0	0	1	0	0	0	3113	159	6	5	1772	5	CDH3	16	68721570	Missense_Mutation	SNP	A	TCGA-CJ-4871-01A-01D-1373-10		68721570	21633183	32	28311											
B4GALNT2	124872	hgsc.bcm.edu;ucsc.edu	37	17	47241500	47241500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	47241500	C	A	47241500	3	1	481	1	0	0	0	0	1	0	0	0	1267	623	22	4	1045	4	B4GALNT2	17	47241500	Missense_Mutation	SNP	C	TCGA-CJ-4871-01A-01D-1373-10		47241500	33953710	33	28312											
ABCA10	10349	hgsc.bcm.edu;ucsc.edu	37	17	67212477	67212477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	67212477	T	C	67212477	3	2	481	1	0	0	0	0	1	0	0	0	29	1464	51	3	4210	3	ABCA10	17	67212477	Missense_Mutation	SNP	T	TCGA-CJ-4871-01A-01D-1373-10	19970977	67212477	13982733	34	28313											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9067458	9067458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	9067458	C	T	9067458	3	4	481	1	0	0	0	0	1	0	0	0	9980	797	28	2	23863	2	MUC16	19	9067458	Missense_Mutation	SNP	C	TCGA-CJ-4871-01A-01D-1373-10		9067458	50061525	35	28314											
PDE4C	5143	hgsc.bcm.edu	37	19	18322690	18322691	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	18322691	-	A	18322690	7	5	481	1	0	1	1	0	0	0	0	0	11648	1638	57	0	476	0	PDE4C	19	18322690	Frame_Shift_Ins	INS	-	TCGA-CJ-4871-01A-01D-1373-10	9255232	18322690	40806293	36	28315											
PRX	57716	hgsc.bcm.edu	37	19	40902612	40902612	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	G	40902612	C	G	40902612	2	3	481	1	0	0	0	0	0	0	0	1	12652	871	31	4		4	PRX	19	40902612	Silent	SNP	C	TCGA-CJ-4871-01A-01D-1373-10	22579922	40902612	18226371	37	28316											
KLK3	354	hgsc.bcm.edu;ucsc.edu	37	19	51363270	51363270	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	C	51363270	G	C	51363270	3	2	481	1	0	0	0	0	1	0	0	0	8412	1000	35	4	786	4	KLK3	19	51363270	Missense_Mutation	SNP	G	TCGA-CJ-4871-01A-01D-1373-10	10460658	51363270	7765713	38	28317											
RPN2	6185	hgsc.bcm.edu;ucsc.edu	37	20	35842247	35842247	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	A	35842247	G	A	35842247	2	1	481	1	0	0	0	0	0	0	0	1	13621	1248	44	2		2	RPN2	20	35842247	Silent	SNP	G	TCGA-CJ-4871-01A-01D-1373-10		35842247	27183273	39	28318											
ACTR5	79913	hgsc.bcm.edu	37	20	37394094	37394094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	G	37394094	T	G	37394094	3	3	481	1	0	0	0	0	1	0	0	0	215	1464	51	5	1248	5	ACTR5	20	37394094	Missense_Mutation	SNP	T	TCGA-CJ-4871-01A-01D-1373-10	1551847	37394094	25631426	40	28319											
R3HDML	140902	hgsc.bcm.edu;ucsc.edu	37	20	42969922	42969922	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	42969922	C	T	42969922	2	4	481	1	0	0	0	0	0	0	0	1	12902	547	19	1		1	R3HDML	20	42969922	Silent	SNP	C	TCGA-CJ-4871-01A-01D-1373-10	5575828	42969922	20055598	41	28320											
C20orf106	0	hgsc.bcm.edu;ucsc.edu	37	20	55100907	55100914	+	Frame_Shift_Del	DEL	AAAGAAAA	AAAGAAAA	-	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	AAAGAAAA	AAAGAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	-	55100914	AAAGAAAA	-	55100907	7	5	481	1	0	1	0	1	0	0	0	0	2078	359	13	0	303	0	C20orf106	20	55100907	Frame_Shift_Del	DEL	AAAGAAAA	TCGA-CJ-4871-01A-01D-1373-10	12130985	55100907	7924613	42	28321											
SON	6651	hgsc.bcm.edu;ucsc.edu	37	21	34922635	34922635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	34922635	G	T	34922635	3	4	481	1	0	0	0	0	1	0	0	0	14939	933	33	4	1108	4	SON	21	34922635	Missense_Mutation	SNP	G	TCGA-CJ-4871-01A-01D-1373-10		34922635	13207260	43	28322											
PICK1	9463	hgsc.bcm.edu;ucsc.edu	37	22	38467740	38467740	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	T	38467740	A	T	38467740	3	4	481	1	0	0	0	0	1	0	0	0	11888	188	7	5	571	5	PICK1	22	38467740	Missense_Mutation	SNP	A	TCGA-CJ-4871-01A-01D-1373-10		38467740	12836826	44	28323											
PNPLA3	80339	hgsc.bcm.edu;ucsc.edu	37	22	44322980	44322980	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	G	44322980	T	G	44322980	3	3	481	1	0	0	0	0	1	0	0	0	12173	1609	56	5	359	5	PNPLA3	22	44322980	Missense_Mutation	SNP	T	TCGA-CJ-4871-01A-01D-1373-10	5855240	44322980	6981586	45	28324											
KDM5C	8242	ucsc.edu	37	X	53250081	53250082	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-CJ-4871-01A-01D-1373-10	TCGA-CJ-4871-11A-01D-1373-10	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	2fa24cc6-b7f4-4e68-987d-5338af3c9b35	249b12b1-3996-487f-8785-f4e3d64db9ba	-	53250082	AA	-	53250081	7	5	481	1	0	1	0	1	0	0	0	0	8142	127	5	0	4712	0	KDM5C	23	53250081	Frame_Shift_Del	DEL	AA	TCGA-CJ-4871-01A-01D-1373-10		53250081	102020479	46	28325											
ARTN	9048	hgsc.bcm.edu	37	1	44401722	44401722	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	44401722	T	A	44401722	2	1	482	1	0	0	0	0	0	0	0	1	1001	1683	59	5		5	ARTN	1	44401722	Silent	SNP	T	TCGA-CJ-4872-01A-01D-1373-10		44401722	204848899	1	28326											
COL11A1	1301	hgsc.bcm.edu;ucsc.edu	37	1	103428247	103428247	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	103428247	G	A	103428247	4	1	482	1	0	0	0	0	0	1	0	0	3669	1328	46	2	2550	2	COL11A1	1	103428247	Nonsense_Mutation	SNP	G	TCGA-CJ-4872-01A-01D-1373-10	59026525	103428247	145822374	2	28327											
CRNN	49860	hgsc.bcm.edu	37	1	152384629	152384629	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	T	152384629	C	T	152384629	2	4	482	1	0	0	0	0	0	0	0	1	3894	755	27	1		1	CRNN	1	152384629	Silent	SNP	C	TCGA-CJ-4872-01A-01D-1373-10	48956382	152384629	96865992	3	28328											
PARP1	142	hgsc.bcm.edu;ucsc.edu	37	1	226555205	226555205	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	T	226555205	A	T	226555205	4	4	482	1	0	0	0	0	0	1	0	0	11461	224	8	5	690	5	PARP1	1	226555205	Nonsense_Mutation	SNP	A	TCGA-CJ-4872-01A-01D-1373-10	74170576	226555205	22695416	4	28329											
RAD51AP2	729475	hgsc.bcm.edu;ucsc.edu	37	2	17698114	17698114	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	G	17698114	A	G	17698114	2	3	482	1	0	0	0	0	0	0	0	1	13000	446	16	3		3	RAD51AP2	2	17698114	Silent	SNP	A	TCGA-CJ-4872-01A-01D-1373-10		17698114	225501259	5	28330											
APOB	338	hgsc.bcm.edu	37	2	21225280	21225280	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	G	21225280	A	G	21225280	2	3	482	1	0	0	0	0	0	0	0	1	785	156	6	3		3	APOB	2	21225280	Silent	SNP	A	TCGA-CJ-4872-01A-01D-1373-10	3527166	21225280	221974093	6	28331											
UBXN2A	165324	hgsc.bcm.edu;ucsc.edu	37	2	24222556	24222556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	G	24222556	A	G	24222556	3	3	482	1	0	0	0	0	1	0	0	0	16926	14	1	3	621	3	UBXN2A	2	24222556	Missense_Mutation	SNP	A	TCGA-CJ-4872-01A-01D-1373-10	2997276	24222556	218976817	7	28332											
C2orf39	0	hgsc.bcm.edu	37	2	26671607	26671607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	C	26671607	A	C	26671607	3	2	482	1	0	0	0	0	1	0	0	0	2166	333	12	5	1487	5	C2orf39	2	26671607	Missense_Mutation	SNP	A	TCGA-CJ-4872-01A-01D-1373-10	2449051	26671607	216527766	8	28333											
SRBD1	55133	hgsc.bcm.edu;ucsc.edu	37	2	45800364	45800364	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	C	45800364	T	C	45800364	2	2	482	1	0	0	0	0	0	0	0	1	15145	1780	62	3		3	SRBD1	2	45800364	Silent	SNP	T	TCGA-CJ-4872-01A-01D-1373-10	19128757	45800364	197399009	9	28334											
SETD2	29072	ucsc.edu	37	3	47164928	47164928	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	47164928	G	A	47164928	4	1	482	1	0	0	0	0	0	1	0	0	14144	1095	38	1	6572	1	SETD2	3	47164928	Nonsense_Mutation	SNP	G	TCGA-CJ-4872-01A-01D-1373-10		47164928	150857502	10	28335											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52661288	52661288	+	Splice_Site	SNP	C	C	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	52661288	C	A	52661288	5	1	482	1	0	0	0	0	0	0	1	0	11498	521	18	4	3430	4	PBRM1	3	52661288	Splice_Site	SNP	C	TCGA-CJ-4872-01A-01D-1373-10	5496360	52661288	145361142	11	28336											
LRIG1	26018	hgsc.bcm.edu;ucsc.edu	37	3	66463415	66463415	+	Missense_Mutation	SNP	C	C	T	rs142754753		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	T	66463415	C	T	66463415	3	4	482	1	0	0	0	0	1	0	0	0	8951	652	23	1	2666	1	LRIG1	3	66463415	Missense_Mutation	SNP	C	TCGA-CJ-4872-01A-01D-1373-10	13802127	66463415	131559015	12	28337											
GBE1	2632	hgsc.bcm.edu;ucsc.edu	37	3	81635323	81635323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	81635323	C	A	81635323	3	1	482	1	0	0	0	0	1	0	0	0	6277	797	28	4	881	4	GBE1	3	81635323	Missense_Mutation	SNP	C	TCGA-CJ-4872-01A-01D-1373-10	15171908	81635323	116387107	13	28338											
PFN2	5217	hgsc.bcm.edu;ucsc.edu	37	3	149684027	149684027	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	G	149684027	T	G	149684027	3	3	482	1	0	0	0	0	1	0	0	0	11775	1783	62	5	76	5	PFN2	3	149684027	Missense_Mutation	SNP	T	TCGA-CJ-4872-01A-01D-1373-10	68048704	149684027	48338403	14	28339											
PIK3CA	5290	hgsc.bcm.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	178936082	G	A	178936082	3	1	482	1	0	0	0	0	1	0	0	0	11920	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-CJ-4872-01A-01D-1373-10	29252055	178936082	19086348	15	28340											
HEATR7B2	0	hgsc.bcm.edu;ucsc.edu	37	5	41000336	41000336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	T	41000336	A	T	41000336	3	4	482	1	0	0	0	0	1	0	0	0	7042	101	4	5	305	5	HEATR7B2	5	41000336	Missense_Mutation	SNP	A	TCGA-CJ-4872-01A-01D-1373-10		41000336	139914924	16	28341											
TNRC18	84629	hgsc.bcm.edu	37	7	5401349	5401349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	C	5401349	T	C	5401349	3	2	482	1	0	0	0	0	1	0	0	0	16351	1579	55	3	4437	3	TNRC18	7	5401349	Missense_Mutation	SNP	T	TCGA-CJ-4872-01A-01D-1373-10		5401349	153737314	17	28342											
HECW1	23072	hgsc.bcm.edu;ucsc.edu	37	7	43531769	43531769	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	G	43531769	A	G	43531769	2	3	482	1	0	0	0	0	0	0	0	1	7049	204	8	3		3	HECW1	7	43531769	Silent	SNP	A	TCGA-CJ-4872-01A-01D-1373-10	38130420	43531769	115606894	18	28343											
LANCL2	55915	hgsc.bcm.edu	37	7	55466150	55466150	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	T	55466150	C	T	55466150	2	4	482	1	0	0	0	0	0	0	0	1	8628	813	29	2		2	LANCL2	7	55466150	Silent	SNP	C	TCGA-CJ-4872-01A-01D-1373-10	11934381	55466150	103672513	19	28344											
USP54	159195	hgsc.bcm.edu;ucsc.edu	37	10	75294440	75294440	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	T	75294440	G	T	75294440	2	4	482	1	0	0	0	0	0	0	0	1	17097	1277	45	4		4	USP54	10	75294440	Silent	SNP	G	TCGA-CJ-4872-01A-01D-1373-10		75294440	60240307	20	28345											
PLEKHA7	144100	hgsc.bcm.edu	37	11	16838758	16838758	+	Silent	SNP	C	C	G	rs35497498	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	G	16838758	C	G	16838758	2	3	482	1	0	0	0	0	0	0	0	1	12068	755	27	4		4	PLEKHA7	11	16838758	Silent	SNP	C	TCGA-CJ-4872-01A-01D-1373-10		16838758	118167758	21	28346											
CDK2AP2	10263	hgsc.bcm.edu	37	11	67274954	67274954	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	C	67274954	G	C	67274954	2	2	482	1	0	0	0	0	0	0	0	1	3141	1103	39	4		4	CDK2AP2	11	67274954	Silent	SNP	G	TCGA-CJ-4872-01A-01D-1373-10	50436196	67274954	67731562	22	28347											
MRPS35	60488	hgsc.bcm.edu;ucsc.edu	37	12	27877103	27877103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	T	27877103	G	T	27877103	3	4	482	1	0	0	0	0	1	0	0	0	9851	1058	37	4	524	4	MRPS35	12	27877103	Missense_Mutation	SNP	G	TCGA-CJ-4872-01A-01D-1373-10		27877103	105974792	23	28348											
KRT2	3849	hgsc.bcm.edu	37	12	53042852	53042852	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	C	53042852	A	C	53042852	3	2	482	1	0	0	0	0	1	0	0	0	8464	131	5	5	1047	5	KRT2	12	53042852	Missense_Mutation	SNP	A	TCGA-CJ-4872-01A-01D-1373-10	25165749	53042852	80809043	24	28349											
ITPKA	3706	hgsc.bcm.edu	37	15	41794987	41794987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	C	41794987	G	C	41794987	3	2	482	1	0	0	0	0	1	0	0	0	7924	1014	35	4	1134	4	ITPKA	15	41794987	Missense_Mutation	SNP	G	TCGA-CJ-4872-01A-01D-1373-10		41794987	60736405	25	28350											
TLN2	83660	hgsc.bcm.edu	37	15	63040617	63040617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	C	63040617	T	C	63040617	3	2	482	1	0	0	0	0	1	0	0	0	15960	1696	59	3	4211	3	TLN2	15	63040617	Missense_Mutation	SNP	T	TCGA-CJ-4872-01A-01D-1373-10	21245630	63040617	39490775	26	28351											
LRRC49	54839	hgsc.bcm.edu;ucsc.edu	37	15	71211393	71211393	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	G	71211393	C	G	71211393	3	3	482	1	0	0	0	0	1	0	0	0	9013	507	18	4	598	4	LRRC49	15	71211393	Missense_Mutation	SNP	C	TCGA-CJ-4872-01A-01D-1373-10	8170776	71211393	31319999	27	28352											
PGPEP1L	145814	hgsc.bcm.edu	37	15	99511807	99511808	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	T	99511808	-	T	99511807	7	5	482	1	0	1	1	0	0	0	0	0	11811	913	32	0	103	0	PGPEP1L	15	99511807	Frame_Shift_Ins	INS	-	TCGA-CJ-4872-01A-01D-1373-10	28300414	99511807	3019585	28	28353											
ZNF48	197407	hgsc.bcm.edu;ucsc.edu	37	16	30408855	30408855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	30408855	C	A	30408855	3	1	482	1	0	0	0	0	1	0	0	0	17946	623	22	4	290	4	ZNF48	16	30408855	Missense_Mutation	SNP	C	TCGA-CJ-4872-01A-01D-1373-10		30408855	59945898	29	28354											
GRB7	2886	hgsc.bcm.edu	37	17	37899216	37899216	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	37899216	T	A	37899216	2	1	482	1	0	0	0	0	0	0	0	1	6766	1538	54	5		5	GRB7	17	37899216	Silent	SNP	T	TCGA-CJ-4872-01A-01D-1373-10		37899216	43295994	30	28355											
KCNH6	81033	hgsc.bcm.edu;ucsc.edu	37	17	61622984	61622984	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	C	61622984	A	C	61622984	2	2	482	1	0	0	0	0	0	0	0	1	8043	291	11	5		5	KCNH6	17	61622984	Silent	SNP	A	TCGA-CJ-4872-01A-01D-1373-10	23723768	61622984	19572226	31	28356											
LASS4	0	hgsc.bcm.edu	37	19	8316056	8316056	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	T	8316056	C	T	8316056	2	4	482	1	0	0	0	0	0	0	0	1	8648	900	32	2		2	LASS4	19	8316056	Silent	SNP	C	TCGA-CJ-4872-01A-01D-1373-10		8316056	50812927	32	28357											
MTP18	0	hgsc.bcm.edu	37	22	30824553	30824553	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	30824553	C	A	30824553	2	1	482	1	0	0	0	0	0	0	0	1	9962	668	24	4		4	MTP18	22	30824553	Silent	SNP	C	TCGA-CJ-4872-01A-01D-1373-10		30824553	20480013	33	28358											
BRD1	23774	hgsc.bcm.edu	37	22	50187881	50187881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	G	50187881	C	G	50187881	3	3	482	1	0	0	0	0	1	0	0	0	1503	796	28	4	1044	4	BRD1	22	50187881	Missense_Mutation	SNP	C	TCGA-CJ-4872-01A-01D-1373-10	19363328	50187881	1116685	34	28359											
CA5B	11238	hgsc.bcm.edu	37	X	15768226	15768226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	15768226	G	A	15768226	3	1	482	1	0	0	0	0	1	0	0	0	2522	942	33	2	82	2	CA5B	23	15768226	Missense_Mutation	SNP	G	TCGA-CJ-4872-01A-01D-1373-10		15768226	139502334	35	28360											
CDKL5	6792	hgsc.bcm.edu;ucsc.edu	37	X	18616730	18616730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	G	18616730	A	G	18616730	3	3	482	1	0	0	0	0	1	0	0	0	3159	101	4	3	1012	3	CDKL5	23	18616730	Missense_Mutation	SNP	A	TCGA-CJ-4872-01A-01D-1373-10	2848504	18616730	136653830	36	28361											
EFHC2	80258	hgsc.bcm.edu;ucsc.edu	37	X	44091880	44091880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4872-01A-01D-1373-10	TCGA-CJ-4872-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	50b5e8ef-90f7-46e3-93b1-7836a42aa091	679d58f1-8637-4b80-a6b5-7149ace6df75	A	44091880	C	A	44091880	3	1	482	1	0	0	0	0	1	0	0	0	4949	796	28	4	806	4	EFHC2	23	44091880	Missense_Mutation	SNP	C	TCGA-CJ-4872-01A-01D-1373-10	25475150	44091880	111178680	37	28362											
VHL	7428	hgsc.bcm.edu	37	3	10183863	10183863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4872-01A-01W-1369-10	TCGA-CJ-4872-11A-01W-1369-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	9a38067c-7a4e-48d5-801e-06f5372fbc70	670ff7c5-0b0c-4af7-ba25-6cc8d5b5562b	A	10183863	G	A	10183863	3	1	483	1	0	0	0	0	1	0	0	0	17174	971	34	2	334	2	VHL	3	10183863	Missense_Mutation	SNP	G	TCGA-CJ-4872-01A-01W-1369-10		10183863	187838567	1	28363											
ZMYM1	79830	hgsc.bcm.edu;ucsc.edu	37	1	35576005	35576005	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	35576005	T	C	35576005	2	2	484	1	0	0	0	0	0	0	0	1	17711	1490	52	3		3	ZMYM1	1	35576005	Silent	SNP	T	TCGA-CJ-4873-01A-01D-1373-10		35576005	213674616	1	28364											
EIF2C3	192669	hgsc.bcm.edu	37	1	36474310	36474310	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	36474310	T	A	36474310	2	1	484	1	0	0	0	0	0	0	0	1	5009	1538	54	5		5	EIF2C3	1	36474310	Silent	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	898305	36474310	212776311	2	28365											
PTPRF	5792	hgsc.bcm.edu;ucsc.edu	37	1	44057602	44057602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	44057602	G	C	44057602	3	2	484	1	0	0	0	0	1	0	0	0	12814	943	33	4	1681	4	PTPRF	1	44057602	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	7583292	44057602	205193019	3	28366											
SCP2	6342	hgsc.bcm.edu;ucsc.edu	37	1	53480709	53480709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	53480709	C	A	53480709	3	1	484	1	0	0	0	0	1	0	0	0	13947	739	26	4	1299	4	SCP2	1	53480709	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	9423107	53480709	195769912	4	28367											
URB2	9816	hgsc.bcm.edu;ucsc.edu	37	1	229773001	229773001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	229773001	G	T	229773001	3	4	484	1	0	0	0	0	1	0	0	0	17037	1290	45	4	2651	4	URB2	1	229773001	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	176292292	229773001	19477620	5	28368											
LYST	1130	hgsc.bcm.edu;ucsc.edu	37	1	235904825	235904825	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	235904825	A	C	235904825	3	2	484	1	0	0	0	0	1	0	0	0	9135	131	5	5	3242	5	LYST	1	235904825	Missense_Mutation	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	6131824	235904825	13345796	6	28369											
OR2C3	81472	hgsc.bcm.edu	37	1	247695344	247695344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	247695344	C	T	247695344	3	4	484	1	0	0	0	0	1	0	0	0	11000	797	28	2	496	2	OR2C3	1	247695344	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	11790519	247695344	1555277	7	28370											
EML4	27436	hgsc.bcm.edu;ucsc.edu	37	2	42510110	42510110	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	42510110	A	G	42510110	2	3	484	1	0	0	0	0	0	0	0	1	5101	98	4	3		3	EML4	2	42510110	Silent	SNP	A	TCGA-CJ-4873-01A-01D-1373-10		42510110	200689263	8	28371											
MSH6	2956	hgsc.bcm.edu;ucsc.edu	37	2	48027971	48027971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	48027971	G	T	48027971	3	4	484	1	0	0	0	0	1	0	0	0	9881	971	34	4	2863	4	MSH6	2	48027971	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	5517861	48027971	195171402	9	28372											
SLC40A1	30061	hgsc.bcm.edu;ucsc.edu	37	2	190428477	190428477	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	190428477	A	T	190428477	3	4	484	1	0	0	0	0	1	0	0	0	14641	246	9	5	488	5	SLC40A1	2	190428477	Missense_Mutation	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	142400506	190428477	52770896	10	28373											
IKZF2	22807	hgsc.bcm.edu;ucsc.edu	37	2	213872774	213872774	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	213872774	A	G	213872774	2	3	484	1	0	0	0	0	0	0	0	1	7622	242	9	3		3	IKZF2	2	213872774	Silent	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	23444297	213872774	29326599	11	28374											
STK11IP	114790	hgsc.bcm.edu	37	2	220466384	220466384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	220466384	G	T	220466384	3	4	484	1	0	0	0	0	1	0	0	0	15300	1348	47	4	336	4	STK11IP	2	220466384	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	6593610	220466384	22732989	12	28375											
SEPT2	4735	hgsc.bcm.edu	37	2	242276812	242276812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	242276812	C	G	242276812	3	3	484	1	0	0	0	0	1	0	0	0	14077	903	32	4	375	4	SEPT2	2	242276812	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	21810428	242276812	922561	13	28376											
HYAL1	3373	hgsc.bcm.edu;ucsc.edu	37	3	50338003	50338003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	50338003	C	T	50338003	3	4	484	1	0	0	0	0	1	0	0	0	7470	835	29	2	92	2	HYAL1	3	50338003	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10		50338003	147684427	14	28377											
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52442023	52442023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	52442023	C	A	52442023	3	1	484	1	0	0	0	0	1	0	0	0	1311	855	30	4	1915	4	BAP1	3	52442023	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	2104020	52442023	145580407	15	28378											
PIK3CA	5290	hgsc.bcm.edu;ucsc.edu	37	3	178948101	178948101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	178948101	A	G	178948101	3	3	484	1	0	0	0	0	1	0	0	0	11920	188	7	3	2947	3	PIK3CA	3	178948101	Missense_Mutation	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	126506078	178948101	19074329	16	28379											
FAM13A	10144	hgsc.bcm.edu;ucsc.edu	37	4	89702427	89702427	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	89702427	G	T	89702427	2	4	484	1	0	0	0	0	0	0	0	1	5456	1045	37	4		4	FAM13A	4	89702427	Silent	SNP	G	TCGA-CJ-4873-01A-01D-1373-10		89702427	101451849	17	28380											
CEP72	55722	hgsc.bcm.edu;ucsc.edu	37	5	624633	624633	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	624633	T	A	624633	3	1	484	1	0	0	0	0	1	0	0	0	3262	1841	64	5	465	5	CEP72	5	624633	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10		624633	180290627	18	28381											
TRIP13	9319	hgsc.bcm.edu;ucsc.edu	37	5	916029	916029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	916029	G	A	916029	3	1	484	1	0	0	0	0	1	0	0	0	16569	1232	43	2	1194	2	TRIP13	5	916029	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	291396	916029	179999231	19	28382											
PDZD2	23037	hgsc.bcm.edu;ucsc.edu	37	5	32089022	32089022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	32089022	C	A	32089022	3	1	484	1	0	0	0	0	1	0	0	0	11708	681	24	4	5542	4	PDZD2	5	32089022	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	31172993	32089022	148826238	20	28383											
SPEF2	79925	hgsc.bcm.edu;ucsc.edu	37	5	35800103	35800103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	35800103	G	C	35800103	3	2	484	1	0	0	0	0	1	0	0	0	15047	1174	41	4	5019	4	SPEF2	5	35800103	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	3711081	35800103	145115157	21	28384											
DAB2	1601	hgsc.bcm.edu	37	5	39382723	39382723	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	39382723	A	C	39382723	2	2	484	1	0	0	0	0	0	0	0	1	4220	407	15	5		5	DAB2	5	39382723	Silent	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	3582620	39382723	141532537	22	28385											
CDKL3	51265	hgsc.bcm.edu;ucsc.edu	37	5	133643866	133643866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	133643866	C	A	133643866	3	1	484	1	0	0	0	0	1	0	0	0	3157	710	25	4	475	4	CDKL3	5	133643866	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	94261143	133643866	47271394	23	28386											
HARS	3035	hgsc.bcm.edu;ucsc.edu	37	5	140057269	140057269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	140057269	T	C	140057269	3	2	484	1	0	0	0	0	1	0	0	0	6966	1464	51	3	857	3	HARS	5	140057269	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	6413403	140057269	40857991	24	28387											
MAML1	9794	hgsc.bcm.edu	37	5	179195993	179195993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	179195993	A	G	179195993	3	3	484	1	0	0	0	0	1	0	0	0	9212	188	7	3	1884	3	MAML1	5	179195993	Missense_Mutation	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	39138724	179195993	1719267	25	28388											
MGAT4B	11282	hgsc.bcm.edu	37	5	179228972	179228972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	179228972	G	T	179228972	3	4	484	1	0	0	0	0	1	0	0	0	9553	1319	46	4	1607	4	MGAT4B	5	179228972	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	32979	179228972	1686288	26	28389											
BAI3	577	hgsc.bcm.edu;ucsc.edu	37	6	69685178	69685178	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	69685178	A	G	69685178	2	3	484	1	0	0	0	0	0	0	0	1	1300	40	2	3		3	BAI3	6	69685178	Silent	SNP	A	TCGA-CJ-4873-01A-01D-1373-10		69685178	101429889	27	28390											
C6orf97	0	hgsc.bcm.edu	37	6	151857578	151857578	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	151857578	T	C	151857578	2	2	484	1	0	0	0	0	0	0	0	1	2376	1567	55	3		3	C6orf97	6	151857578	Silent	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	82172400	151857578	19257489	28	28391											
HECW1	23072	hgsc.bcm.edu	37	7	43484310	43484310	+	Silent	SNP	T	T	C	rs73098706	bycluster;by1000genomes	TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	43484310	T	C	43484310	2	2	484	1	0	0	0	0	0	0	0	1	7049	1509	53	3		3	HECW1	7	43484310	Silent	SNP	T	TCGA-CJ-4873-01A-01D-1373-10		43484310	115654353	29	28392											
ABCB4	5244	hgsc.bcm.edu;ucsc.edu	37	7	87049340	87049340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	87049340	T	C	87049340	3	2	484	1	0	0	0	0	1	0	0	0	43	1493	52	3	1532	3	ABCB4	7	87049340	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	43565030	87049340	72089323	30	28393											
MBLAC1	255374	hgsc.bcm.edu;ucsc.edu	37	7	99725646	99725646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	99725646	C	A	99725646	3	1	484	1	0	0	0	0	1	0	0	0	9358	623	22	4	630	4	MBLAC1	7	99725646	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	12676306	99725646	59413017	31	28394											
AKR1B15	441282	hgsc.bcm.edu	37	7	134261183	134261183	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	134261183	G	A	134261183	5	1	484	1	0	0	0	0	0	0	1	0	468	1275	44	2	852	2	AKR1B15	7	134261183	Splice_Site	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	34535537	134261183	24877480	32	28395											
ZNF862	643641	hgsc.bcm.edu;ucsc.edu	37	7	149559020	149559020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	149559020	C	T	149559020	3	4	484	1	0	0	0	0	1	0	0	0	18207	478	17	2	2797	2	ZNF862	7	149559020	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	15297837	149559020	9579643	33	28396											
GBA2	57704	hgsc.bcm.edu;ucsc.edu	37	9	35738047	35738047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	35738047	T	C	35738047	3	2	484	1	0	0	0	0	1	0	0	0	6274	1783	62	3	495	3	GBA2	9	35738047	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10		35738047	105475384	34	28397											
ABCA1	19	hgsc.bcm.edu;ucsc.edu	37	9	107573139	107573139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	107573139	T	C	107573139	3	2	484	1	0	0	0	0	1	0	0	0	28	1821	63	3	2756	3	ABCA1	9	107573139	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	71835092	107573139	33640292	35	28398											
TBC1D12	23232	hgsc.bcm.edu;ucsc.edu	37	10	96291048	96291048	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	96291048	T	A	96291048	3	1	484	1	0	0	0	0	1	0	0	0	15613	1841	64	5	2136	5	TBC1D12	10	96291048	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10		96291048	39243699	36	28399											
OR51B4	79339	hgsc.bcm.edu;ucsc.edu	37	11	5322937	5322937	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	5322937	C	T	5322937	2	4	484	1	0	0	0	0	0	0	0	1	11097	581	21	2		2	OR51B4	11	5322937	Silent	SNP	C	TCGA-CJ-4873-01A-01D-1373-10		5322937	129683579	37	28400											
SLC22A11	55867	hgsc.bcm.edu;ucsc.edu	37	11	64326672	64326672	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	64326672	C	T	64326672	2	4	484	1	0	0	0	0	0	0	0	1	14455	845	30	2		2	SLC22A11	11	64326672	Silent	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	59003735	64326672	70679844	38	28401											
TMPRSS5	80975	hgsc.bcm.edu;ucsc.edu	37	11	113568092	113568103	+	In_Frame_Del	DEL	CTCACTTGCGCT	CTCACTTGCGCT	-	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	CTCACTTGCGCT	CTCACTTGCGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	-	113568103	CTCACTTGCGCT	-	113568092	7	5	484	1	0	1	0	1	0	0	0	0	16262	681	24	0	1032	0	TMPRSS5	11	113568092	In_Frame_Del	DEL	CTCACTTGCGCT	TCGA-CJ-4873-01A-01D-1373-10	49241420	113568092	21438424	39	28402											
VWF	7450	hgsc.bcm.edu;ucsc.edu	37	12	6180476	6180476	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	6180476	A	G	6180476	2	3	484	1	0	0	0	0	0	0	0	1	17258	214	8	3		3	VWF	12	6180476	Silent	SNP	A	TCGA-CJ-4873-01A-01D-1373-10		6180476	127671419	40	28403	356	2									
VWF	7450	hgsc.bcm.edu;ucsc.edu	37	12	6180485	6180485	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	6180485	G	T	6180485	2	4	484	1	0	0	0	0	0	0	0	1	17258	932	33	4		4	VWF	12	6180485	Silent	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	9	6180485	127671410	41	28404	356	2									
CD4	920	hgsc.bcm.edu	37	12	6909481	6909481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	6909481	C	T	6909481	3	4	484	1	0	0	0	0	1	0	0	0	3016	623	22	2	64	2	CD4	12	6909481	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	728996	6909481	126942414	42	28405											
SPATS2	65244	hgsc.bcm.edu;ucsc.edu	37	12	49884479	49884479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	49884479	G	A	49884479	3	1	484	1	0	0	0	0	1	0	0	0	15031	1029	36	2	243	2	SPATS2	12	49884479	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	42974998	49884479	83967416	43	28406											
SMARCD1	6602	hgsc.bcm.edu;ucsc.edu	37	12	50481179	50481179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	50481179	A	T	50481179	3	4	484	1	0	0	0	0	1	0	0	0	14790	159	6	5	583	5	SMARCD1	12	50481179	Missense_Mutation	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	596700	50481179	83370716	44	28407											
KIAA0748	0	hgsc.bcm.edu;ucsc.edu	37	12	55356811	55356811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	55356811	A	G	55356811	3	3	484	1	0	0	0	0	1	0	0	0	8197	159	6	3	702	3	KIAA0748	12	55356811	Missense_Mutation	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	4875632	55356811	78495084	45	28408											
SLC17A8	246213	hgsc.bcm.edu	37	12	100796248	100796248	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	100796248	T	C	100796248	2	2	484	1	0	0	0	0	0	0	0	1	14436	1741	61	3		3	SLC17A8	12	100796248	Silent	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	45439437	100796248	33055647	46	28409											
PAH	5053	hgsc.bcm.edu;ucsc.edu	37	12	103246688	103246688	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	103246688	A	G	103246688	2	3	484	1	0	0	0	0	0	0	0	1	11401	1	1	3		3	PAH	12	103246688	Silent	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	2450440	103246688	30605207	47	28410											
SRRM4	84530	hgsc.bcm.edu;ucsc.edu	37	12	119591354	119591354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	119591354	C	T	119591354	3	4	484	1	0	0	0	0	1	0	0	0	15183	652	23	1	1333	1	SRRM4	12	119591354	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	16344666	119591354	14260541	48	28411											
PDS5B	23047	hgsc.bcm.edu	37	13	33306263	33306263	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	33306263	A	T	33306263	4	4	484	1	0	0	0	0	0	1	0	0	11699	131	5	5	2223	5	PDS5B	13	33306263	Nonsense_Mutation	SNP	A	TCGA-CJ-4873-01A-01D-1373-10		33306263	81863615	49	28412											
PCID2	55795	hgsc.bcm.edu;ucsc.edu	37	13	113854775	113854775	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	113854775	A	C	113854775	3	2	484	1	0	0	0	0	1	0	0	0	11586	14	1	5	1159	5	PCID2	13	113854775	Missense_Mutation	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	80548512	113854775	1315103	50	28413											
FOXN3	1112	hgsc.bcm.edu;ucsc.edu	37	14	89656758	89656758	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	89656758	A	G	89656758	2	3	484	1	0	0	0	0	0	0	0	1	6028	11	1	3		3	FOXN3	14	89656758	Silent	SNP	A	TCGA-CJ-4873-01A-01D-1373-10		89656758	17692782	51	28414											
BTBD7	55727	hgsc.bcm.edu;ucsc.edu	37	14	93761134	93761134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	93761134	T	C	93761134	3	2	484	1	0	0	0	0	1	0	0	0	1548	1521	53	3	3277	3	BTBD7	14	93761134	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	4104376	93761134	13588406	52	28415											
HSP90AA1	3320	hgsc.bcm.edu;ucsc.edu	37	14	102550300	102550300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	102550300	C	T	102550300	3	4	484	1	0	0	0	0	1	0	0	0	7408	913	32	2	1050	2	HSP90AA1	14	102550300	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	8789166	102550300	4799240	53	28416											
CAPN3	825	hgsc.bcm.edu;ucsc.edu	37	15	42686505	42686505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	42686505	G	A	42686505	3	1	484	1	0	0	0	0	1	0	0	0	2630	1232	43	2	1163	2	CAPN3	15	42686505	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10		42686505	59844887	54	28417											
ZFP106	64397	hgsc.bcm.edu;ucsc.edu	37	15	42749284	42749284	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	42749284	A	G	42749284	2	3	484	1	0	0	0	0	0	0	0	1	17649	175	7	3		3	ZFP106	15	42749284	Silent	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	62779	42749284	59782108	55	28418											
HERC1	8925	hgsc.bcm.edu;ucsc.edu	37	15	64005044	64005044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	64005044	T	C	64005044	3	2	484	1	0	0	0	0	1	0	0	0	7064	1406	49	3	10291	3	HERC1	15	64005044	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	21255760	64005044	38526348	56	28419											
ADAMTS7	11173	hgsc.bcm.edu	37	15	79090348	79090348	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	79090348	G	A	79090348	2	1	484	1	0	0	0	0	0	0	0	1	271	1219	43	2		2	ADAMTS7	15	79090348	Silent	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	15085304	79090348	23441044	57	28420											
C16orf63	0	hgsc.bcm.edu;ucsc.edu	37	16	15977977	15977977	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	15977977	A	G	15977977	2	3	484	1	0	0	0	0	0	0	0	1	1828	214	8	3		3	C16orf63	16	15977977	Silent	SNP	A	TCGA-CJ-4873-01A-01D-1373-10		15977977	74376776	58	28421											
DPEP3	64180	hgsc.bcm.edu;ucsc.edu	37	16	68012420	68012420	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	68012420	T	G	68012420	3	3	484	1	0	0	0	0	1	0	0	0	4717	1551	54	5	974	5	DPEP3	16	68012420	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	52034443	68012420	22342333	59	28422											
ANKRD11	29123	hgsc.bcm.edu;ucsc.edu	37	16	89350352	89350352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	89350352	C	A	89350352	3	1	484	1	0	0	0	0	1	0	0	0	639	622	22	4	5413	4	ANKRD11	16	89350352	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	21337932	89350352	1004401	60	28423											
SERPINB13	5275	hgsc.bcm.edu	37	18	61264230	61264230	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	61264230	G	A	61264230	4	1	484	1	0	0	0	0	0	1	0	0	14113	1357	47	2	835	2	SERPINB13	18	61264230	Nonsense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10		61264230	16813018	61	28424											
DPP9	91039	hgsc.bcm.edu;ucsc.edu	37	19	4719879	4719879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	4719879	T	C	4719879	3	2	484	1	0	0	0	0	1	0	0	0	4735	1696	59	3	2718	3	DPP9	19	4719879	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10		4719879	54409104	62	28425											
PDE4A	5141	hgsc.bcm.edu;ucsc.edu	37	19	10565503	10565503	+	Splice_Site	SNP	A	A	C	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	C	10565503	A	C	10565503	5	2	484	1	0	0	0	0	0	0	1	0	11646	434	15	5	1265	5	PDE4A	19	10565503	Splice_Site	SNP	A	TCGA-CJ-4873-01A-01D-1373-10	5845624	10565503	48563480	63	28426											
KIAA0355	9710	hgsc.bcm.edu	37	19	34819026	34819026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	34819026	G	T	34819026	3	4	484	1	0	0	0	0	1	0	0	0	8177	1020	36	4	1092	4	KIAA0355	19	34819026	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	24253523	34819026	24309957	64	28427											
NCCRP1	342897	hgsc.bcm.edu;ucsc.edu	37	19	39688861	39688861	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	39688861	C	T	39688861	2	4	484	1	0	0	0	0	0	0	0	1	10220	489	17	2		2	NCCRP1	19	39688861	Silent	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	4869835	39688861	19440122	65	28428											
ZSCAN5B	342933	hgsc.bcm.edu;ucsc.edu	37	19	56701571	56701571	+	Missense_Mutation	SNP	G	G	T	rs189564920	by1000genomes	TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	56701571	G	T	56701571	3	4	484	1	0	0	0	0	1	0	0	0	18251	1310	46	4	378	4	ZSCAN5B	19	56701571	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	17012710	56701571	2427412	66	28429											
SSTR4	6754	hgsc.bcm.edu	37	20	23016318	23016318	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	23016318	C	A	23016318	2	1	484	1	0	0	0	0	0	0	0	1	15212	610	22	4		4	SSTR4	20	23016318	Silent	SNP	C	TCGA-CJ-4873-01A-01D-1373-10		23016318	40009202	67	28430											
C20orf132	0	hgsc.bcm.edu	37	20	35776241	35776241	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	35776241	T	G	35776241	3	3	484	1	0	0	0	0	1	0	0	0	2088	1838	64	5	2054	5	C20orf132	20	35776241	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10	12759923	35776241	27249279	68	28431											
TOP1	7150	hgsc.bcm.edu;ucsc.edu	37	20	39728844	39728844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	39728844	G	T	39728844	3	4	484	1	0	0	0	0	1	0	0	0	16375	942	33	4	1170	4	TOP1	20	39728844	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	3952603	39728844	23296676	69	28432											
UBE2V1	7335	hgsc.bcm.edu	37	20	48732051	48732051	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	G	48732051	C	G	48732051	3	3	484	1	0	0	0	0	1	0	0	0	16887	913	32	4	492	4	UBE2V1	20	48732051	Missense_Mutation	SNP	C	TCGA-CJ-4873-01A-01D-1373-10	9003207	48732051	14293469	70	28433											
PCNT	5116	hgsc.bcm.edu	37	21	47832830	47832830	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	47832830	T	A	47832830	3	1	484	1	0	0	0	0	1	0	0	0	11597	1667	58	5	6188	5	PCNT	21	47832830	Missense_Mutation	SNP	T	TCGA-CJ-4873-01A-01D-1373-10		47832830	297065	71	28434											
GJB1	2705	hgsc.bcm.edu	37	X	70444041	70444041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	T	70444041	A	T	70444041	3	4	484	1	0	0	0	0	1	0	0	0	6414	217	8	5	486	5	GJB1	23	70444041	Missense_Mutation	SNP	A	TCGA-CJ-4873-01A-01D-1373-10		70444041	84826519	72	28435											
ZDHHC9	51114	hgsc.bcm.edu	37	X	128948750	128948750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	128948750	G	A	128948750	3	1	484	1	0	0	0	0	1	0	0	0	17634	1232	43	2	609	2	ZDHHC9	23	128948750	Missense_Mutation	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	58504709	128948750	26321810	73	28436											
USP26	83844	hgsc.bcm.edu;ucsc.edu	37	X	132161106	132161106	+	Silent	SNP	G	G	A	rs139383150		TCGA-CJ-4873-01A-01D-1373-10	TCGA-CJ-4873-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7eed9b90-c88f-4855-830e-cbb3e01cf6d5	8f41e14f-10c0-49cf-a781-75d049bb1752	A	132161106	G	A	132161106	2	1	484	1	0	0	0	0	0	0	0	1	17069	1136	40	1		1	USP26	23	132161106	Silent	SNP	G	TCGA-CJ-4873-01A-01D-1373-10	3212356	132161106	23109454	74	28437											
HP1BP3	50809	hgsc.bcm.edu	37	1	21100040	21100040	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	21100040	G	T	21100040	2	4	485	1	0	0	0	0	0	0	0	1	7335	1219	43	4		4	HP1BP3	1	21100040	Silent	SNP	G	TCGA-CJ-4874-01A-01D-1373-10		21100040	228150581	1	28438											
FCRL5	83416	hgsc.bcm.edu	37	1	157494179	157494179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	157494179	C	T	157494179	3	4	485	1	0	0	0	0	1	0	0	0	5805	623	22	2	836	2	FCRL5	1	157494179	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	136394139	157494179	91756442	2	28439											
TMEM63A	9725	hgsc.bcm.edu	37	1	226037701	226037701	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	226037701	C	T	226037701	2	4	485	1	0	0	0	0	0	0	0	1	16202	680	24	2		2	TMEM63A	1	226037701	Silent	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	68543522	226037701	23212920	3	28440											
C2orf16	84226	hgsc.bcm.edu;ucsc.edu	37	2	27799674	27799674	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	27799674	T	G	27799674	3	3	485	1	0	0	0	0	1	0	0	0	2159	1490	52	5	237	5	C2orf16	2	27799674	Missense_Mutation	SNP	T	TCGA-CJ-4874-01A-01D-1373-10		27799674	215399699	4	28441											
VIT	5212	hgsc.bcm.edu	37	2	37035867	37035867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	37035867	C	T	37035867	3	4	485	1	0	0	0	0	1	0	0	0	17183	768	27	1	1821	1	VIT	2	37035867	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	9236193	37035867	206163506	5	28442											
SMEK2	57223	hgsc.bcm.edu	37	2	55804449	55804449	+	Splice_Site	SNP	A	A	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	55804449	A	T	55804449	5	4	485	1	0	0	0	0	0	0	1	0	14807	405	14	5	969	5	SMEK2	2	55804449	Splice_Site	SNP	A	TCGA-CJ-4874-01A-01D-1373-10	18768582	55804449	187394924	6	28443											
SCN1A	6323	hgsc.bcm.edu;ucsc.edu	37	2	166847875	166847875	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	C	166847875	T	C	166847875	2	2	485	1	0	0	0	0	0	0	0	1	13927	1567	55	3		3	SCN1A	2	166847875	Silent	SNP	T	TCGA-CJ-4874-01A-01D-1373-10	111043426	166847875	76351498	7	28444											
TMEM169	92691	hgsc.bcm.edu;ucsc.edu	37	2	216965089	216965089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	216965089	G	A	216965089	3	1	485	1	0	0	0	0	1	0	0	0	16096	971	34	2	724	2	TMEM169	2	216965089	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10	50117214	216965089	26234284	8	28445											
DNAJB8	165721	hgsc.bcm.edu	37	3	128181552	128181552	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	128181552	G	A	128181552	2	1	485	1	0	0	0	0	0	0	0	1	4628	1281	45	2		2	DNAJB8	3	128181552	Silent	SNP	G	TCGA-CJ-4874-01A-01D-1373-10		128181552	69840878	9	28446											
ZBTB38	253461	hgsc.bcm.edu	37	3	141162128	141162128	+	Missense_Mutation	SNP	C	C	G	rs62282002	bycluster;by1000genomes	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	141162128	C	G	141162128	3	3	485	1	0	0	0	0	1	0	0	0	17551	507	18	4	900	4	ZBTB38	3	141162128	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	12980576	141162128	56860302	10	28447											
ALG3	10195	hgsc.bcm.edu	37	3	183963025	183963025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	183963025	A	T	183963025	3	4	485	1	0	0	0	0	1	0	0	0	520	188	7	5	774	5	ALG3	3	183963025	Missense_Mutation	SNP	A	TCGA-CJ-4874-01A-01D-1373-10	42800897	183963025	14059405	11	28448											
CYP2U1	113612	hgsc.bcm.edu	37	4	108868571	108868571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	108868571	A	G	108868571	3	3	485	1	0	0	0	0	1	0	0	0	4177	43	2	3	1176	3	CYP2U1	4	108868571	Missense_Mutation	SNP	A	TCGA-CJ-4874-01A-01D-1373-10		108868571	82285705	12	28449											
NDFIP1	80762	hgsc.bcm.edu;ucsc.edu	37	5	141520137	141520137	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	141520137	T	G	141520137	3	3	485	1	0	0	0	0	1	0	0	0	10252	1522	53	5	527	5	NDFIP1	5	141520137	Missense_Mutation	SNP	T	TCGA-CJ-4874-01A-01D-1373-10		141520137	39395123	13	28450											
RMND5B	64777	hgsc.bcm.edu	37	5	177574747	177574747	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	177574747	C	T	177574747	2	4	485	1	0	0	0	0	0	0	0	1	13411	697	25	2		2	RMND5B	5	177574747	Silent	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	36054610	177574747	3340513	14	28451											
PGC	5225	hgsc.bcm.edu;ucsc.edu	37	6	41711090	41711090	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	41711090	G	T	41711090	2	4	485	1	0	0	0	0	0	0	0	1	11792	987	35	4		4	PGC	6	41711090	Silent	SNP	G	TCGA-CJ-4874-01A-01D-1373-10		41711090	129403977	15	28452											
GPR115	221393	hgsc.bcm.edu;ucsc.edu	37	6	47684543	47684543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	47684543	G	A	47684543	3	1	485	1	0	0	0	0	1	0	0	0	6639	1275	44	2	1956	2	GPR115	6	47684543	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10	5973453	47684543	123430524	16	28453											
SERAC1	84947	hgsc.bcm.edu	37	6	158565392	158565392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	158565392	C	T	158565392	3	4	485	1	0	0	0	0	1	0	0	0	14087	884	31	1	1460	1	SERAC1	6	158565392	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	110880849	158565392	12549675	17	28454											
ESYT2	57488	hgsc.bcm.edu;ucsc.edu	37	7	158590762	158590762	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	158590762	T	G	158590762	2	3	485	1	0	0	0	0	0	0	0	1	5267	1741	61	5		5	ESYT2	7	158590762	Silent	SNP	T	TCGA-CJ-4874-01A-01D-1373-10		158590762	547901	18	28455											
CSMD1	64478	hgsc.bcm.edu	37	8	3265496	3265496	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	3265496	T	G	3265496	3	3	485	1	0	0	0	0	1	0	0	0	3946	1580	55	5	8926	5	CSMD1	8	3265496	Missense_Mutation	SNP	T	TCGA-CJ-4874-01A-01D-1373-10		3265496	143098526	19	28456											
KIAA2026	158358	hgsc.bcm.edu	37	9	5968932	5968932	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	5968932	A	G	5968932	2	3	485	1	0	0	0	0	0	0	0	1	8277	1	1	3		3	KIAA2026	9	5968932	Silent	SNP	A	TCGA-CJ-4874-01A-01D-1373-10		5968932	135244499	20	28457											
FREM1	158326	hgsc.bcm.edu;ucsc.edu	37	9	14859188	14859188	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	14859188	T	G	14859188	2	3	485	1	0	0	0	0	0	0	0	1	6051	1567	55	5		5	FREM1	9	14859188	Silent	SNP	T	TCGA-CJ-4874-01A-01D-1373-10	8890256	14859188	126354243	21	28458											
C9orf93	0	hgsc.bcm.edu;ucsc.edu	37	9	15971713	15971713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	15971713	C	T	15971713	3	4	485	1	0	0	0	0	1	0	0	0	2508	565	20	2	3958	2	C9orf93	9	15971713	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	1112525	15971713	125241718	22	28459											
IFT74	80173	hgsc.bcm.edu	37	9	26984278	26984278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	26984278	C	A	26984278	3	1	485	1	0	0	0	0	1	0	0	0	7570	565	20	4	343	4	IFT74	9	26984278	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	11012565	26984278	114229153	23	28460											
RC3H2	54542	hgsc.bcm.edu	37	9	125621286	125621286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	125621286	G	T	125621286	3	4	485	1	0	0	0	0	1	0	0	0	13180	1261	44	4	1748	4	RC3H2	9	125621286	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10	98637008	125621286	15592145	24	28461											
C10orf140	0	hgsc.bcm.edu;ucsc.edu	37	10	21804074	21804074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	21804074	G	T	21804074	3	4	485	1	0	0	0	0	1	0	0	0	1597	942	33	4	52	4	C10orf140	10	21804074	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10		21804074	113730673	25	28462											
EBF3	253738	hgsc.bcm.edu	37	10	131671770	131671770	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	C	131671770	G	C	131671770	3	2	485	1	0	0	0	0	1	0	0	0	4884	1086	38	4	964	4	EBF3	10	131671770	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10	109867696	131671770	3862977	26	28463											
HRAS	3265	hgsc.bcm.edu;ucsc.edu	37	11	533545	533545	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	C	533545	G	C	533545	3	2	485	1	0	0	0	0	1	0	0	0	7355	991	35	4	286	4	HRAS	11	533545	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10		533545	134472971	27	28464											
EPS8L2	64787	hgsc.bcm.edu;ucsc.edu	37	11	710455	710455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	C	710455	T	C	710455	3	2	485	1	0	0	0	0	1	0	0	0	5198	1435	50	3	144	3	EPS8L2	11	710455	Missense_Mutation	SNP	T	TCGA-CJ-4874-01A-01D-1373-10	176910	710455	134296061	28	28465											
ACCS	84680	hgsc.bcm.edu;ucsc.edu	37	11	44104723	44104723	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	44104723	G	A	44104723	4	1	485	1	0	0	0	0	0	1	0	0	133	1183	41	2	1162	2	ACCS	11	44104723	Nonsense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10	43394268	44104723	90901793	29	28466											
PIK3C2G	5288	hgsc.bcm.edu	37	12	18446881	18446881	+	Silent	SNP	C	C	T	rs7301521	bycluster;byfrequency;by1000genomes	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	18446881	C	T	18446881	2	4	485	1	0	0	0	0	0	0	0	1	11918	718	25	2		2	PIK3C2G	12	18446881	Silent	SNP	C	TCGA-CJ-4874-01A-01D-1373-10		18446881	115405014	30	28467											
KRT79	338785	hgsc.bcm.edu	37	12	53218102	53218103	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	-	53218103	CA	-	53218102	7	5	485	1	0	1	0	1	0	0	0	0	8499	697	25	0	727	0	KRT79	12	53218102	Frame_Shift_Del	DEL	CA	TCGA-CJ-4874-01A-01D-1373-10	34771221	53218102	80633793	31	28468											
PCDH20	64881	hgsc.bcm.edu	37	13	61987429	61987429	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	61987429	C	G	61987429	3	3	485	1	0	0	0	0	1	0	0	0	11522	768	27	4	2056	4	PCDH20	13	61987429	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10		61987429	53182449	32	28469											
RIPK3	11035	hgsc.bcm.edu	37	14	24808388	24808388	+	Silent	SNP	A	A	G	rs3181247	bycluster;byfrequency;by1000genomes	TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	24808388	A	G	24808388	2	3	485	1	0	0	0	0	0	0	0	1	13395	69	3	3		3	RIPK3	14	24808388	Silent	SNP	A	TCGA-CJ-4874-01A-01D-1373-10		24808388	82541152	33	28470											
KLHDC2	23588	hgsc.bcm.edu;ucsc.edu	37	14	50249623	50249623	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	50249623	T	G	50249623	2	3	485	1	0	0	0	0	0	0	0	1	8363	1770	62	5		5	KLHDC2	14	50249623	Silent	SNP	T	TCGA-CJ-4874-01A-01D-1373-10	25441235	50249623	57099917	34	28471											
C14orf174	0	hgsc.bcm.edu	37	14	77844692	77844692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	77844692	G	A	77844692	3	1	485	1	0	0	0	0	1	0	0	0	1761	942	33	2	933	2	C14orf174	14	77844692	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10	27595069	77844692	29504848	35	28472											
ACAN	176	hgsc.bcm.edu	37	15	89398669	89398669	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	89398669	T	A	89398669	2	1	485	1	0	0	0	0	0	0	0	1	117	1799	63	5		5	ACAN	15	89398669	Silent	SNP	T	TCGA-CJ-4874-01A-01D-1373-10		89398669	13132723	36	28473											
CACNA1H	8912	hgsc.bcm.edu;ucsc.edu	37	16	1248701	1248701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	C	1248701	T	C	1248701	3	2	485	1	0	0	0	0	1	0	0	0	2547	1841	64	3	748	3	CACNA1H	16	1248701	Missense_Mutation	SNP	T	TCGA-CJ-4874-01A-01D-1373-10		1248701	89106052	37	28474											
ABCA3	21	hgsc.bcm.edu	37	16	2376045	2376045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	2376045	C	G	2376045	3	3	485	1	0	0	0	0	1	0	0	0	33	912	32	4	4945	4	ABCA3	16	2376045	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	1127344	2376045	87978708	38	28475											
XYLT1	64131	hgsc.bcm.edu;ucsc.edu	37	16	17221643	17221643	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	17221643	C	T	17221643	2	4	485	1	0	0	0	0	0	0	0	1	17475	796	28	2		2	XYLT1	16	17221643	Silent	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	14845598	17221643	73133110	39	28476											
GTF3C1	2975	hgsc.bcm.edu;ucsc.edu	37	16	27504602	27504602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	27504602	C	T	27504602	3	4	485	1	0	0	0	0	1	0	0	0	6879	864	30	2	3619	2	GTF3C1	16	27504602	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	10282959	27504602	62850151	40	28477											
PLCG2	5336	hgsc.bcm.edu	37	16	81934322	81934322	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	81934322	C	G	81934322	2	3	485	1	0	0	0	0	0	0	0	1	12043	581	21	4		4	PLCG2	16	81934322	Silent	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	54429720	81934322	8420431	41	28478											
CNTNAP1	8506	hgsc.bcm.edu	37	17	40844515	40844515	+	Splice_Site	SNP	A	A	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	40844515	A	T	40844515	5	4	485	1	0	0	0	0	0	0	1	0	3648	202	7	5	2595	5	CNTNAP1	17	40844515	Splice_Site	SNP	A	TCGA-CJ-4874-01A-01D-1373-10		40844515	40350695	42	28479											
MED13	9969	hgsc.bcm.edu	37	17	60140649	60140649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	60140649	C	T	60140649	3	4	485	1	0	0	0	0	1	0	0	0	9437	855	30	2	6560	2	MED13	17	60140649	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	19296134	60140649	21054561	43	28480											
TSHZ1	10194	hgsc.bcm.edu;ucsc.edu	37	18	72998919	72998919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	72998919	G	T	72998919	3	4	485	1	0	0	0	0	1	0	0	0	16635	933	33	4	1424	4	TSHZ1	18	72998919	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10		72998919	5078329	44	28481											
GNA15	2769	hgsc.bcm.edu	37	19	3162989	3162989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	3162989	G	T	3162989	3	4	485	1	0	0	0	0	1	0	0	0	6510	1087	38	4	1123	4	GNA15	19	3162989	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10		3162989	55965994	45	28482											
TRIP10	9322	hgsc.bcm.edu;ucsc.edu	37	19	6744588	6744588	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	6744588	C	T	6744588	2	4	485	1	0	0	0	0	0	0	0	1	16566	697	25	2		2	TRIP10	19	6744588	Silent	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	3581599	6744588	52384395	46	28483											
ZNF442	79973	hgsc.bcm.edu	37	19	12460568	12460568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	12460568	A	G	12460568	3	3	485	1	0	0	0	0	1	0	0	0	17927	246	9	3	56	3	ZNF442	19	12460568	Missense_Mutation	SNP	A	TCGA-CJ-4874-01A-01D-1373-10	5715980	12460568	46668415	47	28484											
ZNF791	163049	hgsc.bcm.edu;ucsc.edu	37	19	12739410	12739410	+	Missense_Mutation	SNP	A	A	G	rs148416734		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	12739410	A	G	12739410	3	3	485	1	0	0	0	0	1	0	0	0	18175	449	16	3	1081	3	ZNF791	19	12739410	Missense_Mutation	SNP	A	TCGA-CJ-4874-01A-01D-1373-10	278842	12739410	46389573	48	28485											
PRODH2	58510	hgsc.bcm.edu	37	19	36290976	36290976	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	36290976	C	T	36290976	2	4	485	1	0	0	0	0	0	0	0	1	12559	726	26	2		2	PRODH2	19	36290976	Silent	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	23551566	36290976	22838007	49	28486											
CD79A	973	hgsc.bcm.edu	37	19	42384963	42384963	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	C	42384963	T	C	42384963	2	2	485	1	0	0	0	0	0	0	0	1	3038	1471	51	3		3	CD79A	19	42384963	Silent	SNP	T	TCGA-CJ-4874-01A-01D-1373-10	6093987	42384963	16744020	50	28487											
ZFP112	7771	hgsc.bcm.edu	37	19	44832764	44832764	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	C	44832764	G	C	44832764	3	2	485	1	0	0	0	0	1	0	0	0	17650	1386	48	4	1181	4	ZFP112	19	44832764	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10	2447801	44832764	14296219	51	28488											
LILRB4	11006	hgsc.bcm.edu	37	19	55176302	55176302	+	Splice_Site	SNP	T	T	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	55176302	T	A	55176302	5	1	485	1	0	0	0	0	0	0	1	0	8800	1710	59	5	726	5	LILRB4	19	55176302	Splice_Site	SNP	T	TCGA-CJ-4874-01A-01D-1373-10	10343538	55176302	3952681	52	28489											
ZNF530	348327	hgsc.bcm.edu	37	19	58118342	58118342	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	58118342	A	T	58118342	2	4	485	1	0	0	0	0	0	0	0	1	17983	175	7	5		5	ZNF530	19	58118342	Silent	SNP	A	TCGA-CJ-4874-01A-01D-1373-10	2942040	58118342	1010641	53	28490											
CENPB	1059	hgsc.bcm.edu	37	20	3765902	3765902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	3765902	T	A	3765902	3	1	485	1	0	0	0	0	1	0	0	0	3229	1551	54	5	574	5	CENPB	20	3765902	Missense_Mutation	SNP	T	TCGA-CJ-4874-01A-01D-1373-10		3765902	59259618	54	28491											
TSHZ2	128553	hgsc.bcm.edu	37	20	51870958	51870958	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	51870958	A	T	51870958	4	4	485	1	0	0	0	0	0	1	0	0	16636	363	13	5	967	5	TSHZ2	20	51870958	Nonsense_Mutation	SNP	A	TCGA-CJ-4874-01A-01D-1373-10	48105056	51870958	11154562	55	28492											
MAGEB2	4113	hgsc.bcm.edu	37	X	30236765	30236765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	30236765	G	T	30236765	3	4	485	1	0	0	0	0	1	0	0	0	9183	1116	39	4	70	4	MAGEB2	23	30236765	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10		30236765	125033795	56	28493											
TMEM47	83604	hgsc.bcm.edu	37	X	34657472	34657472	+	Missense_Mutation	SNP	C	C	T	rs112608415		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	34657472	C	T	34657472	3	4	485	1	0	0	0	0	1	0	0	0	16183	623	22	2	294	2	TMEM47	23	34657472	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	4420707	34657472	120613088	57	28494											
FAM47C	442444	hgsc.bcm.edu	37	X	37027645	37027645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	37027645	C	T	37027645	3	4	485	1	0	0	0	0	1	0	0	0	5578	507	18	2	1164	2	FAM47C	23	37027645	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	2370173	37027645	118242915	58	28495											
TRO	7216	hgsc.bcm.edu	37	X	54957276	54957276	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	A	54957276	T	A	54957276	2	1	485	1	0	0	0	0	0	0	0	1	16586	1567	55	5		5	TRO	23	54957276	Silent	SNP	T	TCGA-CJ-4874-01A-01D-1373-10	17929631	54957276	100313284	59	28496											
OGT	8473	hgsc.bcm.edu;ucsc.edu	37	X	70756092	70756092	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	G	70756092	A	G	70756092	2	3	485	1	0	0	0	0	0	0	0	1	10854	175	7	3		3	OGT	23	70756092	Silent	SNP	A	TCGA-CJ-4874-01A-01D-1373-10	15798816	70756092	84514468	60	28497											
PHKA1	5255	hgsc.bcm.edu;ucsc.edu	37	X	71802268	71802268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	71802268	C	T	71802268	3	4	485	1	0	0	0	0	1	0	0	0	11850	826	29	2	201	2	PHKA1	23	71802268	Missense_Mutation	SNP	C	TCGA-CJ-4874-01A-01D-1373-10	1046176	71802268	83468292	61	28498											
TAF7L	54457	hgsc.bcm.edu;ucsc.edu	37	X	100547952	100547952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4874-01A-01D-1373-10	TCGA-CJ-4874-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	a625b4ef-cab6-4e63-b48f-dc6b69faaf5d	9bcf5c2a-6391-4368-9726-ff1cf3cee868	T	100547952	G	T	100547952	3	4	485	1	0	0	0	0	1	0	0	0	15545	1357	47	4	1358	4	TAF7L	23	100547952	Missense_Mutation	SNP	G	TCGA-CJ-4874-01A-01D-1373-10	28745684	100547952	54722608	62	28499											
CLCN6	1185	hgsc.bcm.edu;ucsc.edu	37	1	11896157	11896157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	11896157	G	A	11896157	3	1	486	1	0	0	0	0	1	0	0	0	3469	1059	37	1	2007	1	CLCN6	1	11896157	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10		11896157	237354464	1	28500											
PTPRF	5792	hgsc.bcm.edu	37	1	44086831	44086831	+	Silent	SNP	C	C	T	rs1143702	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	44086831	C	T	44086831	2	4	486	1	0	0	0	0	0	0	0	1	12814	547	19	1		1	PTPRF	1	44086831	Silent	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	32190674	44086831	205163790	2	28501											
PTCH2	8643	hgsc.bcm.edu	37	1	45292921	45292921	+	Missense_Mutation	SNP	C	C	A	rs112613379	alternate_allele	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	45292921	C	A	45292921	3	1	486	1	0	0	0	0	1	0	0	0	12741	768	27	4	1227	4	PTCH2	1	45292921	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	1206090	45292921	203957700	3	28502											
ZFYVE9	9372	hgsc.bcm.edu	37	1	52703736	52703736	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	52703736	T	A	52703736	4	1	486	1	0	0	0	0	0	1	0	0	17683	1821	63	5	653	5	ZFYVE9	1	52703736	Nonsense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	7410815	52703736	196546885	4	28503											
LHX8	431707	hgsc.bcm.edu;ucsc.edu	37	1	75608988	75608988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	75608988	G	A	75608988	3	1	486	1	0	0	0	0	1	0	0	0	8783	1319	46	2	593	2	LHX8	1	75608988	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	22905252	75608988	173641633	5	28504											
ATP1A1	476	hgsc.bcm.edu	37	1	116943758	116943758	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	116943758	G	T	116943758	4	4	486	1	0	0	0	0	0	1	0	0	1128	1291	45	4	2819	4	ATP1A1	1	116943758	Nonsense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	41334770	116943758	132306863	6	28505											
FDPS	2224	hgsc.bcm.edu;ucsc.edu	37	1	155289628	155289628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	155289628	A	C	155289628	3	2	486	1	0	0	0	0	1	0	0	0	5810	14	1	5	1002	5	FDPS	1	155289628	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	38345870	155289628	93960993	7	28506											
SSR2	6746	hgsc.bcm.edu	37	1	155979424	155979424	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	155979424	A	G	155979424	2	3	486	1	0	0	0	0	0	0	0	1	15203	127	5	3		3	SSR2	1	155979424	Silent	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	689796	155979424	93271197	8	28507											
DUSP27	92235	hgsc.bcm.edu;ucsc.edu	37	1	167097707	167097707	+	Silent	SNP	A	A	T	rs138064659	by1000genomes;alternate_allele	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	167097707	A	T	167097707	2	4	486	1	0	0	0	0	0	0	0	1	4826	204	8	5		5	DUSP27	1	167097707	Silent	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	11118283	167097707	82152914	9	28508											
FAM20B	9917	hgsc.bcm.edu;ucsc.edu	37	1	179013267	179013267	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	179013267	A	T	179013267	3	4	486	1	0	0	0	0	1	0	0	0	5542	11	1	5	287	5	FAM20B	1	179013267	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	11915560	179013267	70237354	10	28509											
PPP1R15B	84919	hgsc.bcm.edu;ucsc.edu	37	1	204379755	204379755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	204379755	T	C	204379755	3	2	486	1	0	0	0	0	1	0	0	0	12374	1551	54	3	1364	3	PPP1R15B	1	204379755	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	25366488	204379755	44870866	11	28510											
CNST	163882	hgsc.bcm.edu;ucsc.edu	37	1	246810937	246810938	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	246810938	-	A	246810937	7	5	486	1	0	1	1	0	0	0	0	0	3636	477	17	0	1464	0	CNST	1	246810937	Frame_Shift_Ins	INS	-	TCGA-CJ-4875-01A-01D-1373-10	42431182	246810937	2439684	12	28511											
C2orf16	84226	hgsc.bcm.edu;ucsc.edu	37	2	27801317	27801317	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	27801317	T	G	27801317	3	3	486	1	0	0	0	0	1	0	0	0	2159	1800	63	5	1880	5	C2orf16	2	27801317	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10		27801317	215398056	13	28512											
SOS1	6654	hgsc.bcm.edu	37	2	39285899	39285899	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	39285899	A	T	39285899	3	4	486	1	0	0	0	0	1	0	0	0	14949	449	16	5	3825	5	SOS1	2	39285899	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	11484582	39285899	203913474	14	28513											
FAM136A	84908	hgsc.bcm.edu	37	2	70529055	70529055	+	Splice_Site	SNP	A	A	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	70529055	A	T	70529055	5	4	486	1	0	0	0	0	0	0	1	0	5454	405	14	5	339	5	FAM136A	2	70529055	Splice_Site	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	31243156	70529055	172670318	15	28514											
TTC21B	79809	hgsc.bcm.edu;ucsc.edu	37	2	166788344	166788344	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	166788344	A	C	166788344	3	2	486	1	0	0	0	0	1	0	0	0	16700	131	5	5	3220	5	TTC21B	2	166788344	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	96259289	166788344	76411029	16	28515											
LRP2	4036	hgsc.bcm.edu;ucsc.edu	37	2	170115607	170115607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	170115607	G	T	170115607	3	4	486	1	0	0	0	0	1	0	0	0	8963	971	34	4	11778	4	LRP2	2	170115607	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	3327263	170115607	73083766	17	28516											
ITGAV	3685	hgsc.bcm.edu;ucsc.edu	37	2	187521116	187521116	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	187521116	A	T	187521116	2	4	486	1	0	0	0	0	0	0	0	1	7895	410	15	5		5	ITGAV	2	187521116	Silent	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	17405509	187521116	55678257	18	28517											
GIGYF2	26058	hgsc.bcm.edu;ucsc.edu	37	2	233680350	233680350	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	233680350	G	A	233680350	4	1	486	1	0	0	0	0	0	1	0	0	6385	1357	47	2	2247	2	GIGYF2	2	233680350	Nonsense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	46159234	233680350	9519023	19	28518											
ESPNL	339768	hgsc.bcm.edu	37	2	239033943	239033943	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	239033943	G	A	239033943	2	1	486	1	0	0	0	0	0	0	0	1	5257	1132	40	1		1	ESPNL	2	239033943	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	5353593	239033943	4165430	20	28519											
VHL	7428	hgsc.bcm.edu	37	3	10188235	10188236	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	10188236	-	G	10188235	7	5	486	1	0	1	1	0	0	0	0	0	17174	1461	51	0	384	0	VHL	3	10188235	Frame_Shift_Ins	INS	-	TCGA-CJ-4875-01A-01D-1373-10		10188235	187834195	21	28520											
PBRM1	55193	hgsc.bcm.edu	37	3	52598178	52598179	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	52598179	-	A	52598178	7	5	486	1	0	1	1	0	0	0	0	0	11498	933	33	0	1169	0	PBRM1	3	52598178	Frame_Shift_Ins	INS	-	TCGA-CJ-4875-01A-01D-1373-10	42409943	52598178	145424252	22	28521											
ZNF80	7634	hgsc.bcm.edu	37	3	113955638	113955638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	113955638	G	A	113955638	3	1	486	1	0	0	0	0	1	0	0	0	18180	1232	43	2	541	2	ZNF80	3	113955638	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	61357460	113955638	84066792	23	28522											
MED12L	116931	hgsc.bcm.edu;ucsc.edu	37	3	150903129	150903129	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	150903129	G	C	150903129	3	2	486	1	0	0	0	0	1	0	0	0	9436	1058	37	4	1549	4	MED12L	3	150903129	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	36947491	150903129	47119301	24	28523											
MCF2L2	23101	hgsc.bcm.edu	37	3	182923678	182923678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	182923678	T	C	182923678	3	2	486	1	0	0	0	0	1	0	0	0	9387	1812	63	3	498	3	MCF2L2	3	182923678	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	32020549	182923678	15098752	25	28524											
SRP72	6731	hgsc.bcm.edu;ucsc.edu	37	4	57366826	57366826	+	Silent	SNP	G	G	C	rs143643243	byfrequency;alternate_allele	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	57366826	G	C	57366826	2	2	486	1	0	0	0	0	0	0	0	1	15169	1161	41	4		4	SRP72	4	57366826	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10		57366826	133787450	26	28525											
G3BP2	9908	hgsc.bcm.edu;ucsc.edu	37	4	76579235	76579235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	76579235	T	C	76579235	3	2	486	1	0	0	0	0	1	0	0	0	6149	1841	64	3	711	3	G3BP2	4	76579235	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	19212409	76579235	114575041	27	28526											
ADH1A	124	hgsc.bcm.edu	37	4	100205662	100205662	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	100205662	T	A	100205662	3	1	486	1	0	0	0	0	1	0	0	0	307	1435	50	5	686	5	ADH1A	4	100205662	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	23626427	100205662	90948614	28	28527											
PPA2	27068	hgsc.bcm.edu;ucsc.edu	37	4	106370542	106370542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	106370542	C	T	106370542	3	4	486	1	0	0	0	0	1	0	0	0	12294	478	17	2	754	2	PPA2	4	106370542	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	6164880	106370542	84783734	29	28528											
ANKRD50	57182	hgsc.bcm.edu;ucsc.edu	37	4	125590305	125590305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	125590305	A	T	125590305	3	4	486	1	0	0	0	0	1	0	0	0	677	72	3	5	166	5	ANKRD50	4	125590305	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	19219763	125590305	65563971	30	28529											
WDR17	116966	hgsc.bcm.edu	37	4	177094493	177094493	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	177094493	A	T	177094493	3	4	486	1	0	0	0	0	1	0	0	0	17289	246	9	5	3539	5	WDR17	4	177094493	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	51504188	177094493	14059783	31	28530											
COL4A3BP	10087	hgsc.bcm.edu	37	5	74685443	74685443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	74685443	A	C	74685443	3	2	486	1	0	0	0	0	1	0	0	0	3694	40	2	5	640	5	COL4A3BP	5	74685443	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10		74685443	106229817	32	28531											
CMYA5	202333	hgsc.bcm.edu	37	5	79030663	79030663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	79030663	C	G	79030663	3	3	486	1	0	0	0	0	1	0	0	0	3592	477	17	4	6081	4	CMYA5	5	79030663	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	4345220	79030663	101884597	33	28532											
GPR98	84059	hgsc.bcm.edu;ucsc.edu	37	5	89923473	89923473	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	89923473	T	G	89923473	3	3	486	1	0	0	0	0	1	0	0	0	6728	1522	53	5	1144	5	GPR98	5	89923473	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	10892810	89923473	90991787	34	28533											
SNCAIP	9627	hgsc.bcm.edu	37	5	121758633	121758633	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	121758633	T	C	121758633	2	2	486	1	0	0	0	0	0	0	0	1	14854	1567	55	3		3	SNCAIP	5	121758633	Silent	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	31835160	121758633	59156627	35	28534											
ZNF187	0	hgsc.bcm.edu	37	6	28239931	28239932	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	28239932	-	T	28239931	7	5	486	1	0	1	1	0	0	0	0	0	17765	1020	36	0	236	0	ZNF187	6	28239931	Frame_Shift_Ins	INS	-	TCGA-CJ-4875-01A-01D-1373-10		28239931	142875136	36	28535											
RPL7L1	285855	hgsc.bcm.edu	37	6	42853798	42853798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	42853798	A	G	42853798	3	3	486	1	0	0	0	0	1	0	0	0	13614	101	4	3	527	3	RPL7L1	6	42853798	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	14613867	42853798	128261269	37	28536											
POLR1C	9533	hgsc.bcm.edu	37	6	43488991	43488991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	43488991	A	C	43488991	3	2	486	1	0	0	0	0	1	0	0	0	12218	247	9	5	1028	5	POLR1C	6	43488991	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	635193	43488991	127626076	38	28537											
COL19A1	1310	hgsc.bcm.edu	37	6	70639451	70639451	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	70639451	C	A	70639451	2	1	486	1	0	0	0	0	0	0	0	1	3678	697	25	4		4	COL19A1	6	70639451	Silent	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	27150460	70639451	100475616	39	28538											
MDN1	23195	hgsc.bcm.edu;ucsc.edu	37	6	90499925	90499925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	90499925	G	T	90499925	3	4	486	1	0	0	0	0	1	0	0	0	9422	1203	42	4	16127	4	MDN1	6	90499925	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	19860474	90499925	80615142	40	28539											
C6orf204	0	hgsc.bcm.edu	37	6	118801654	118801654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	118801654	A	G	118801654	3	3	486	1	0	0	0	0	1	0	0	0	2355	217	8	3	669	3	C6orf204	6	118801654	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	28301729	118801654	52313413	41	28540											
AKAP12	9590	hgsc.bcm.edu	37	6	151626918	151626918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	151626918	G	A	151626918	3	1	486	1	0	0	0	0	1	0	0	0	448	1348	47	2	205	2	AKAP12	6	151626918	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	32825264	151626918	19488149	42	28541											
RBM16	0	hgsc.bcm.edu	37	6	155145481	155145481	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	155145481	A	G	155145481	2	3	486	1	0	0	0	0	0	0	0	1	13131	301	11	3		3	RBM16	6	155145481	Silent	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	3518563	155145481	15969586	43	28542											
MIOS	54468	hgsc.bcm.edu;ucsc.edu	37	7	7612146	7612146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	7612146	C	G	7612146	3	3	486	1	0	0	0	0	1	0	0	0	9596	594	21	4	42	4	MIOS	7	7612146	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10		7612146	151526517	44	28543											
NPC1L1	29881	hgsc.bcm.edu	37	7	44579792	44579792	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	44579792	A	C	44579792	2	2	486	1	0	0	0	0	0	0	0	1	10578	146	6	5		5	NPC1L1	7	44579792	Silent	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	36967646	44579792	114558871	45	28544											
SRPK2	6733	hgsc.bcm.edu	37	7	104783695	104783695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	104783695	T	C	104783695	3	2	486	1	0	0	0	0	1	0	0	0	15172	1580	55	3	1231	3	SRPK2	7	104783695	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	60203903	104783695	54354968	46	28545											
OPN1SW	611	hgsc.bcm.edu;ucsc.edu	37	7	128415817	128415817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	128415817	A	G	128415817	3	3	486	1	0	0	0	0	1	0	0	0	10887	362	13	3	1038	3	OPN1SW	7	128415817	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	23632122	128415817	30722846	47	28546											
VPS13B	157680	hgsc.bcm.edu;ucsc.edu	37	8	100514007	100514007	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	100514007	T	G	100514007	2	3	486	1	0	0	0	0	0	0	0	1	17202	1683	59	5		5	VPS13B	8	100514007	Silent	SNP	T	TCGA-CJ-4875-01A-01D-1373-10		100514007	45850015	48	28547											
TMEM74	157753	hgsc.bcm.edu;ucsc.edu	37	8	109796776	109796776	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	109796776	G	A	109796776	2	1	486	1	0	0	0	0	0	0	0	1	16214	933	33	2		2	TMEM74	8	109796776	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	9282769	109796776	36567246	49	28548											
SMU1	55234	hgsc.bcm.edu	37	9	33073680	33073680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	33073680	T	C	33073680	3	2	486	1	0	0	0	0	1	0	0	0	14830	1464	51	3	1434	3	SMU1	9	33073680	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10		33073680	108139751	50	28549											
C9orf91	203197	hgsc.bcm.edu	37	9	117396073	117396073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	117396073	T	A	117396073	3	1	486	1	0	0	0	0	1	0	0	0	2507	1580	55	5	518	5	C9orf91	9	117396073	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	84322393	117396073	23817358	51	28550											
ENTPD8	377841	hgsc.bcm.edu	37	9	140330189	140330189	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	140330189	G	A	140330189	2	1	486	1	0	0	0	0	0	0	0	1	5147	1195	42	2		2	ENTPD8	9	140330189	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	22934116	140330189	883242	52	28551											
PRKCQ	5588	hgsc.bcm.edu;ucsc.edu	37	10	6525533	6525533	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	6525533	A	C	6525533	3	2	486	1	0	0	0	0	1	0	0	0	12525	40	2	5	1104	5	PRKCQ	10	6525533	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10		6525533	129009214	53	28552											
A1CF	29974	hgsc.bcm.edu;ucsc.edu	37	10	52569667	52569667	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	52569667	A	T	52569667	2	4	486	1	0	0	0	0	0	0	0	1	2	407	15	5		5	A1CF	10	52569667	Silent	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	46044134	52569667	82965080	54	28553											
HK1	3098	hgsc.bcm.edu;ucsc.edu	37	10	71139760	71139760	+	Missense_Mutation	SNP	G	G	A	rs140290094	byfrequency	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	71139760	G	A	71139760	3	1	486	1	0	0	0	0	1	0	0	0	7197	1087	38	1	1386	1	HK1	10	71139760	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	18570093	71139760	64394987	55	28554											
HK1	3098	hgsc.bcm.edu;ucsc.edu	37	10	71144134	71144134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	71144134	G	A	71144134	3	1	486	1	0	0	0	0	1	0	0	0	7197	1145	40	1	1836	1	HK1	10	71144134	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	4374	71144134	64390613	56	28555											
DLG5	9231	hgsc.bcm.edu;ucsc.edu	37	10	79556277	79556277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	79556277	G	T	79556277	3	4	486	1	0	0	0	0	1	0	0	0	4560	1000	35	4	539	4	DLG5	10	79556277	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	8412143	79556277	55978470	57	28556											
ABLIM1	3983	hgsc.bcm.edu;ucsc.edu	37	10	116227940	116227940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	116227940	T	G	116227940	3	3	486	1	0	0	0	0	1	0	0	0	94	1623	56	5	1073	5	ABLIM1	10	116227940	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	36671663	116227940	19306807	58	28557											
ZNF195	7748	hgsc.bcm.edu;ucsc.edu	37	11	3380733	3380733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	3380733	A	G	3380733	3	3	486	1	0	0	0	0	1	0	0	0	17770	333	12	3	388	3	ZNF195	11	3380733	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10		3380733	131625783	59	28558											
ILK	3611	hgsc.bcm.edu;ucsc.edu	37	11	6631379	6631379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	6631379	C	A	6631379	3	1	486	1	0	0	0	0	1	0	0	0	7720	811	28	4	1121	4	ILK	11	6631379	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	3250646	6631379	128375137	60	28559											
MS4A15	219995	hgsc.bcm.edu	37	11	60531258	60531258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	60531258	A	C	60531258	3	2	486	1	0	0	0	0	1	0	0	0	9866	130	5	5	54	5	MS4A15	11	60531258	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	53899879	60531258	74475258	61	28560											
SPTBN2	6712	hgsc.bcm.edu	37	11	66466957	66466957	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	66466957	C	T	66466957	2	4	486	1	0	0	0	0	0	0	0	1	15132	581	21	2		2	SPTBN2	11	66466957	Silent	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	5935699	66466957	68539559	62	28561											
SPTBN2	6712	hgsc.bcm.edu;ucsc.edu	37	11	66483325	66483325	+	Silent	SNP	G	G	A	rs34117933	bycluster;byfrequency;by1000genomes	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	66483325	G	A	66483325	2	1	486	1	0	0	0	0	0	0	0	1	15132	1045	37	1		1	SPTBN2	11	66483325	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	16368	66483325	68523191	63	28562											
FGF19	9965	hgsc.bcm.edu	37	11	69514321	69514321	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	69514321	A	T	69514321	4	4	486	1	0	0	0	0	0	1	0	0	5854	157	6	5	294	5	FGF19	11	69514321	Nonsense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	3030996	69514321	65492195	64	28563											
GRAMD1B	57476	hgsc.bcm.edu	37	11	123477481	123477481	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	123477481	T	A	123477481	3	1	486	1	0	0	0	0	1	0	0	0	6755	1693	59	5	1097	5	GRAMD1B	11	123477481	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	53963160	123477481	11529035	65	28564											
OR8B8	26493	hgsc.bcm.edu	37	11	124310505	124310505	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	124310505	G	A	124310505	2	1	486	1	0	0	0	0	0	0	0	1	11237	1368	48	2		2	OR8B8	11	124310505	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	833024	124310505	10696011	66	28565											
DDX25	29118	hgsc.bcm.edu;ucsc.edu	37	11	125791252	125791252	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	125791252	C	A	125791252	2	1	486	1	0	0	0	0	0	0	0	1	4354	813	29	4		4	DDX25	11	125791252	Silent	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	1480747	125791252	9215264	67	28566											
GLB1L3	112937	hgsc.bcm.edu	37	11	134147736	134147736	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	134147736	C	A	134147736	2	1	486	1	0	0	0	0	0	0	0	1	6437	643	23	4		4	GLB1L3	11	134147736	Silent	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	8356484	134147736	858780	68	28567											
TSPAN9	10867	hgsc.bcm.edu;ucsc.edu	37	12	3388212	3388212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	3388212	T	A	3388212	3	1	486	1	0	0	0	0	1	0	0	0	16666	1609	56	5	320	5	TSPAN9	12	3388212	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10		3388212	130463683	69	28568											
SCN8A	6334	hgsc.bcm.edu	37	12	52162982	52162982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	52162982	A	G	52162982	3	3	486	1	0	0	0	0	1	0	0	0	13937	217	8	3	3297	3	SCN8A	12	52162982	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	48774770	52162982	81688913	70	28569											
ITGA5	3678	hgsc.bcm.edu	37	12	54792404	54792404	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	54792404	G	A	54792404	4	1	486	1	0	0	0	0	0	1	0	0	7886	1328	46	2	241	2	ITGA5	12	54792404	Nonsense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	2629422	54792404	79059491	71	28570											
SYCP3	50511	hgsc.bcm.edu;ucsc.edu	37	12	102125403	102125403	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	102125403	T	C	102125403	2	2	486	1	0	0	0	0	0	0	0	1	15446	1780	62	3		3	SYCP3	12	102125403	Silent	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	47332999	102125403	31726492	72	28571											
KIAA0564	0	hgsc.bcm.edu;ucsc.edu	37	13	42461384	42461384	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	42461384	G	T	42461384	2	4	486	1	0	0	0	0	0	0	0	1	8192	1219	43	4		4	KIAA0564	13	42461384	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10		42461384	72708494	73	28572											
ENOX1	55068	hgsc.bcm.edu;ucsc.edu	37	13	43934148	43934148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	43934148	G	T	43934148	3	4	486	1	0	0	0	0	1	0	0	0	5128	1261	44	4	1547	4	ENOX1	13	43934148	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	1472764	43934148	71235730	74	28573											
CLN5	1203	hgsc.bcm.edu;ucsc.edu	37	13	77574785	77574785	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	77574785	A	C	77574785	3	2	486	1	0	0	0	0	1	0	0	0	3546	246	9	5	919	5	CLN5	13	77574785	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	33640637	77574785	37595093	75	28574											
C14orf115	0	hgsc.bcm.edu	37	14	74825562	74825562	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	74825562	C	G	74825562	2	3	486	1	0	0	0	0	0	0	0	1	1742	610	22	4		4	C14orf115	14	74825562	Silent	SNP	C	TCGA-CJ-4875-01A-01D-1373-10		74825562	32523978	76	28575											
MGA	23269	hgsc.bcm.edu;ucsc.edu	37	15	41988561	41988561	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	41988561	A	G	41988561	2	3	486	1	0	0	0	0	0	0	0	1	9547	175	7	3		3	MGA	15	41988561	Silent	SNP	A	TCGA-CJ-4875-01A-01D-1373-10		41988561	60542831	77	28576											
GANC	2595	hgsc.bcm.edu;ucsc.edu	37	15	42585003	42585003	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	42585003	A	C	42585003	3	2	486	1	0	0	0	0	1	0	0	0	6241	449	16	5	418	5	GANC	15	42585003	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	596442	42585003	59946389	78	28577											
VPS13C	54832	hgsc.bcm.edu;ucsc.edu	37	15	62173973	62173973	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	62173973	G	C	62173973	3	2	486	1	0	0	0	0	1	0	0	0	17203	1232	43	4	1674	4	VPS13C	15	62173973	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	19588970	62173973	40357419	79	28578											
MGRN1	23295	hgsc.bcm.edu	37	16	4721421	4721421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	4721421	G	T	4721421	3	4	486	1	0	0	0	0	1	0	0	0	9566	933	33	4	793	4	MGRN1	16	4721421	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10		4721421	85633332	80	28579											
C16orf70	80262	hgsc.bcm.edu	37	16	67179492	67179492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	67179492	T	G	67179492	3	3	486	1	0	0	0	0	1	0	0	0	1831	1551	54	5	1124	5	C16orf70	16	67179492	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	62458071	67179492	23175261	81	28580											
CDH15	1013	hgsc.bcm.edu	37	16	89246670	89246670	+	Silent	SNP	T	T	C	rs59865771	bycluster;byfrequency;by1000genomes	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	89246670	T	C	89246670	2	2	486	1	0	0	0	0	0	0	0	1	3102	1461	51	3		3	CDH15	16	89246670	Silent	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	22067178	89246670	1108083	82	28581											
KPNB1	3837	hgsc.bcm.edu	37	17	45745724	45745724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	45745724	G	T	45745724	3	4	486	1	0	0	0	0	1	0	0	0	8442	1261	44	4	1210	4	KPNB1	17	45745724	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10		45745724	35449486	83	28582											
UBE2O	63893	hgsc.bcm.edu;ucsc.edu	37	17	74398736	74398736	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	74398736	C	T	74398736	2	4	486	1	0	0	0	0	0	0	0	1	16880	842	30	2		2	UBE2O	17	74398736	Silent	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	28653012	74398736	6796474	84	28583											
KCTD1	284252	hgsc.bcm.edu	37	18	24127779	24127779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	24127779	T	A	24127779	3	1	486	1	0	0	0	0	1	0	0	0	8103	1551	54	5	1895	5	KCTD1	18	24127779	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10		24127779	53949469	85	28584											
TMEM146	0	hgsc.bcm.edu	37	19	5727334	5727334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	5727334	A	T	5727334	3	4	486	1	0	0	0	0	1	0	0	0	16072	14	1	5	192	5	TMEM146	19	5727334	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10		5727334	53401649	86	28585											
ZNF699	374879	hgsc.bcm.edu;ucsc.edu	37	19	9407410	9407410	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	9407410	G	A	9407410	4	1	486	1	0	0	0	0	0	1	0	0	18113	1299	45	2	1262	2	ZNF699	19	9407410	Nonsense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	3680076	9407410	49721573	87	28586											
ZNF763	284390	hgsc.bcm.edu;ucsc.edu	37	19	12089194	12089194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	12089194	C	T	12089194	3	4	486	1	0	0	0	0	1	0	0	0	18149	739	26	2	478	2	ZNF763	19	12089194	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	2681784	12089194	47039789	88	28587											
JAK3	3718	hgsc.bcm.edu	37	19	17945716	17945716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	17945716	A	G	17945716	3	3	486	1	0	0	0	0	1	0	0	0	7946	275	10	3	1266	3	JAK3	19	17945716	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	5856522	17945716	41183267	89	28588											
DMKN	93099	hgsc.bcm.edu;ucsc.edu	37	19	36002673	36002673	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	36002673	T	A	36002673	3	1	486	1	0	0	0	0	1	0	0	0	4584	1812	63	5	1072	5	DMKN	19	36002673	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	18056957	36002673	23126310	90	28589											
APLP1	333	hgsc.bcm.edu	37	19	36370071	36370071	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	36370071	C	A	36370071	2	1	486	1	0	0	0	0	0	0	0	1	778	842	30	4		4	APLP1	19	36370071	Silent	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	367398	36370071	22758912	91	28590											
RASGRP4	115727	hgsc.bcm.edu;ucsc.edu	37	19	38904103	38904103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	38904103	G	T	38904103	3	4	486	1	0	0	0	0	1	0	0	0	13090	1252	44	4	811	4	RASGRP4	19	38904103	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	2534032	38904103	20224880	92	28591											
RINL	126432	hgsc.bcm.edu	37	19	39361237	39361237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	39361237	C	A	39361237	3	1	486	1	0	0	0	0	1	0	0	0	13388	594	21	4	723	4	RINL	19	39361237	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	457134	39361237	19767746	93	28592											
CEACAM4	1089	hgsc.bcm.edu;ucsc.edu	37	19	42132312	42132312	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	42132312	G	A	42132312	2	1	486	1	0	0	0	0	0	0	0	1	3196	1252	44	2		2	CEACAM4	19	42132312	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	2771075	42132312	16996671	94	28593											
LYPD4	147719	hgsc.bcm.edu	37	19	42341417	42341417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	42341417	A	G	42341417	3	3	486	1	0	0	0	0	1	0	0	0	9119	43	2	3	203	3	LYPD4	19	42341417	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	209105	42341417	16787566	95	28594											
SLC6A16	28968	hgsc.bcm.edu;ucsc.edu	37	19	49793633	49793633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	49793633	C	T	49793633	3	4	486	1	0	0	0	0	1	0	0	0	14692	884	31	1	256	1	SLC6A16	19	49793633	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	7452216	49793633	9335350	96	28595											
TGM3	7053	hgsc.bcm.edu	37	20	2291724	2291724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	2291724	C	G	2291724	3	3	486	1	0	0	0	0	1	0	0	0	15843	903	32	4	503	4	TGM3	20	2291724	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10		2291724	60733796	97	28596											
TMC2	117532	hgsc.bcm.edu;ucsc.edu	37	20	2577832	2577832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	2577832	G	A	2577832	3	1	486	1	0	0	0	0	1	0	0	0	15997	1232	43	2	1150	2	TMC2	20	2577832	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	286108	2577832	60447688	98	28597											
PHF20	51230	hgsc.bcm.edu;ucsc.edu	37	20	34458954	34458954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	G	34458954	A	G	34458954	3	3	486	1	0	0	0	0	1	0	0	0	11838	362	13	3	1026	3	PHF20	20	34458954	Missense_Mutation	SNP	A	TCGA-CJ-4875-01A-01D-1373-10	31881122	34458954	28566566	99	28598											
IFT52	51098	hgsc.bcm.edu;ucsc.edu	37	20	42242573	42242573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	42242573	G	C	42242573	3	2	486	1	0	0	0	0	1	0	0	0	7568	1319	46	4	591	4	IFT52	20	42242573	Missense_Mutation	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	7783619	42242573	20782947	100	28599	357	2									
IFT52	51098	hgsc.bcm.edu;ucsc.edu	37	20	42242577	42242577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	42242577	C	A	42242577	3	1	486	1	0	0	0	0	1	0	0	0	7568	854	30	4	595	4	IFT52	20	42242577	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	4	42242577	20782943	101	28600	357	2									
MYBL2	4605	hgsc.bcm.edu	37	20	42340166	42340166	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	42340166	G	T	42340166	2	4	486	1	0	0	0	0	0	0	0	1	10017	1306	46	4		4	MYBL2	20	42340166	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	97589	42340166	20685354	102	28601											
TSHZ2	128553	hgsc.bcm.edu	37	20	51872581	51872581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	C	51872581	T	C	51872581	3	2	486	1	0	0	0	0	1	0	0	0	16636	1551	54	3	2590	3	TSHZ2	20	51872581	Missense_Mutation	SNP	T	TCGA-CJ-4875-01A-01D-1373-10	9532415	51872581	11152939	103	28602											
CABIN1	23523	hgsc.bcm.edu;ucsc.edu	37	22	24567705	24567705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	24567705	C	A	24567705	3	1	486	1	0	0	0	0	1	0	0	0	2530	855	30	4	5912	4	CABIN1	22	24567705	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10		24567705	26736861	104	28603											
ELFN2	114794	hgsc.bcm.edu	37	22	37769178	37769178	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	37769178	G	T	37769178	2	4	486	1	0	0	0	0	0	0	0	1	5060	1335	47	4		4	ELFN2	22	37769178	Silent	SNP	G	TCGA-CJ-4875-01A-01D-1373-10	13201473	37769178	13535388	105	28604											
ACE2	59272	hgsc.bcm.edu	37	X	15585872	15585872	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	15585872	T	A	15585872	2	1	486	1	0	0	0	0	0	0	0	1	137	1741	61	5		5	ACE2	23	15585872	Silent	SNP	T	TCGA-CJ-4875-01A-01D-1373-10		15585872	139684688	106	28605											
USP9X	8239	hgsc.bcm.edu	37	X	41025293	41025293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	41025293	C	A	41025293	3	1	486	1	0	0	0	0	1	0	0	0	17102	564	20	4	2212	4	USP9X	23	41025293	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	25439421	41025293	114245267	107	28606											
FHL1	2273	hgsc.bcm.edu	37	X	135290019	135290019	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	T	135290019	C	T	135290019	4	4	486	1	0	0	0	0	0	1	0	0	5885	711	25	2	527	2	FHL1	23	135290019	Nonsense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	94264726	135290019	19980541	108	28607											
GPR112	139378	hgsc.bcm.edu	37	X	135431960	135431960	+	Missense_Mutation	SNP	C	C	A	rs145052934	alternate_allele	TCGA-CJ-4875-01A-01D-1373-10	TCGA-CJ-4875-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	03121d77-7273-499f-8405-6bf3a76d30bf	97a9f656-3230-4832-91d5-6827503e146d	A	135431960	C	A	135431960	3	1	486	1	0	0	0	0	1	0	0	0	6636	855	30	4	6105	4	GPR112	23	135431960	Missense_Mutation	SNP	C	TCGA-CJ-4875-01A-01D-1373-10	141941	135431960	19838600	109	28608											
KIF2C	11004	hgsc.bcm.edu	37	1	45205617	45205617	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	45205617	T	G	45205617	3	3	487	1	0	0	0	0	1	0	0	0	8306	1551	54	5	15	5	KIF2C	1	45205617	Missense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10		45205617	204045004	1	28609											
NSUN4	387338	hgsc.bcm.edu	37	1	46806550	46806550	+	Missense_Mutation	SNP	C	C	T	rs41293277	bycluster;byfrequency;by1000genomes	TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	T	46806550	C	T	46806550	3	4	487	1	0	0	0	0	1	0	0	0	10687	681	24	2	54	2	NSUN4	1	46806550	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10	1600933	46806550	202444071	2	28610											
BRDT	676	hgsc.bcm.edu;ucsc.edu	37	1	92442700	92442700	+	Missense_Mutation	SNP	T	T	C	rs192529642	by1000genomes	TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	92442700	T	C	92442700	3	2	487	1	0	0	0	0	1	0	0	0	1510	1696	59	3	737	3	BRDT	1	92442700	Missense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10	45636150	92442700	156807921	3	28611											
FRRS1	391059	hgsc.bcm.edu;ucsc.edu	37	1	100214290	100214290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	100214290	A	C	100214290	3	2	487	1	0	0	0	0	1	0	0	0	6067	449	16	5	1905	5	FRRS1	1	100214290	Missense_Mutation	SNP	A	TCGA-CJ-4876-01A-01D-1373-10	7771590	100214290	149036331	4	28612											
IPO9	55705	hgsc.bcm.edu	37	1	201827588	201827588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	201827588	A	G	201827588	3	3	487	1	0	0	0	0	1	0	0	0	7806	333	12	3	1281	3	IPO9	1	201827588	Missense_Mutation	SNP	A	TCGA-CJ-4876-01A-01D-1373-10	101613298	201827588	47423033	5	28613											
BRE	9577	hgsc.bcm.edu	37	2	28117424	28117424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	28117424	A	G	28117424	3	3	487	1	0	0	0	0	1	0	0	0	1511	101	4	3	3	3	BRE	2	28117424	Missense_Mutation	SNP	A	TCGA-CJ-4876-01A-01D-1373-10		28117424	215081949	6	28614											
CUL3	8452	hgsc.bcm.edu;ucsc.edu	37	2	225379414	225379414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	T	225379414	C	T	225379414	3	4	487	1	0	0	0	0	1	0	0	0	4058	478	17	2	1904	2	CUL3	2	225379414	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10	197261990	225379414	17819959	7	28615											
C2orf85	0	hgsc.bcm.edu	37	2	242815059	242815059	+	Missense_Mutation	SNP	C	C	T	rs28368764	byfrequency;by1000genomes	TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	T	242815059	C	T	242815059	3	4	487	1	0	0	0	0	1	0	0	0	2202	768	27	1	1358	1	C2orf85	2	242815059	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10	17435645	242815059	384314	8	28616											
ITPR1	3708	hgsc.bcm.edu;ucsc.edu	37	3	4730230	4730230	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	T	4730230	C	T	4730230	4	4	487	1	0	0	0	0	0	1	0	0	7927	711	25	2	3868	2	ITPR1	3	4730230	Nonsense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10		4730230	193292200	9	28617											
SMARCC1	6599	hgsc.bcm.edu;ucsc.edu	37	3	47712153	47712153	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	47712153	G	C	47712153	3	2	487	1	0	0	0	0	1	0	0	0	14788	991	35	4	1463	4	SMARCC1	3	47712153	Missense_Mutation	SNP	G	TCGA-CJ-4876-01A-01D-1373-10	42981923	47712153	150310277	10	28618											
APPL1	26060	hgsc.bcm.edu	37	3	57291024	57291024	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	57291024	G	C	57291024	3	2	487	1	0	0	0	0	1	0	0	0	817	1377	48	4	1246	4	APPL1	3	57291024	Missense_Mutation	SNP	G	TCGA-CJ-4876-01A-01D-1373-10	9578871	57291024	140731406	11	28619											
AFF1	4299	hgsc.bcm.edu;ucsc.edu	37	4	88053496	88053496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	88053496	A	G	88053496	3	3	487	1	0	0	0	0	1	0	0	0	356	391	14	3	3338	3	AFF1	4	88053496	Missense_Mutation	SNP	A	TCGA-CJ-4876-01A-01D-1373-10		88053496	103100780	12	28620											
RAI14	26064	hgsc.bcm.edu;ucsc.edu	37	5	34824236	34824236	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	34824236	G	C	34824236	2	2	487	1	0	0	0	0	0	0	0	1	13021	1335	47	4		4	RAI14	5	34824236	Silent	SNP	G	TCGA-CJ-4876-01A-01D-1373-10		34824236	146091024	13	28621											
LMNB1	4001	hgsc.bcm.edu;ucsc.edu	37	5	126154654	126154654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	126154654	T	C	126154654	3	2	487	1	0	0	0	0	1	0	0	0	8856	1821	63	3	1002	3	LMNB1	5	126154654	Missense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10	91330418	126154654	54760606	14	28622											
IL9	3578	hgsc.bcm.edu	37	5	135228122	135228122	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	135228122	A	G	135228122	2	3	487	1	0	0	0	0	0	0	0	1	7714	10	1	3		3	IL9	5	135228122	Silent	SNP	A	TCGA-CJ-4876-01A-01D-1373-10	9073468	135228122	45687138	15	28623											
RUNX2	860	hgsc.bcm.edu	37	6	45514873	45514873	+	Missense_Mutation	SNP	C	C	A	rs144852234	alternate_allele	TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	A	45514873	C	A	45514873	3	1	487	1	0	0	0	0	1	0	0	0	13761	681	24	4	1443	4	RUNX2	6	45514873	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10		45514873	125600194	16	28624											
GOPC	57120	hgsc.bcm.edu;ucsc.edu	37	6	117900162	117900162	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	A	117900162	T	A	117900162	3	1	487	1	0	0	0	0	1	0	0	0	6580	1606	56	5	1069	5	GOPC	6	117900162	Missense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10	72385289	117900162	53214905	17	28625											
DNAH11	8701	hgsc.bcm.edu	37	7	21742417	21742417	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	21742417	T	G	21742417	3	3	487	1	0	0	0	0	1	0	0	0	4601	1432	50	5	6438	5	DNAH11	7	21742417	Missense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10		21742417	137396246	18	28626											
TECPR1	25851	hgsc.bcm.edu	37	7	97870246	97870246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	A	97870246	C	A	97870246	3	1	487	1	0	0	0	0	1	0	0	0	15755	536	19	4	2723	4	TECPR1	7	97870246	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10	76127829	97870246	61268417	19	28627											
EPHA1	2041	hgsc.bcm.edu;ucsc.edu	37	7	143090819	143090819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	143090819	C	G	143090819	3	3	487	1	0	0	0	0	1	0	0	0	5167	864	30	4	301	4	EPHA1	7	143090819	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10	45220573	143090819	16047844	20	28628											
GAPVD1	26130	hgsc.bcm.edu;ucsc.edu	37	9	128069788	128069788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	128069788	A	G	128069788	3	3	487	1	0	0	0	0	1	0	0	0	6246	43	2	3	1227	3	GAPVD1	9	128069788	Missense_Mutation	SNP	A	TCGA-CJ-4876-01A-01D-1373-10		128069788	13143643	21	28629											
KIF20B	9585	hgsc.bcm.edu	37	10	91469727	91469727	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	91469727	G	C	91469727	3	2	487	1	0	0	0	0	1	0	0	0	8294	1319	46	4	409	4	KIF20B	10	91469727	Missense_Mutation	SNP	G	TCGA-CJ-4876-01A-01D-1373-10		91469727	44065020	22	28630											
CCDC87	55231	hgsc.bcm.edu	37	11	66359725	66359725	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	A	66359725	G	A	66359725	2	1	487	1	0	0	0	0	0	0	0	1	2864	1335	47	2		2	CCDC87	11	66359725	Silent	SNP	G	TCGA-CJ-4876-01A-01D-1373-10		66359725	68646791	23	28631											
LRRK2	120892	hgsc.bcm.edu;ucsc.edu	37	12	40714842	40714844	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	-	40714844	TGA	-	40714842	7	5	487	1	0	1	0	1	0	0	0	0	9040	1567	55	0	5160	0	LRRK2	12	40714842	In_Frame_Del	DEL	TGA	TCGA-CJ-4876-01A-01D-1373-10		40714842	93137053	24	28632											
SOHLH2	54937	hgsc.bcm.edu;ucsc.edu	37	13	36748941	36748941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	36748941	T	C	36748941	3	2	487	1	0	0	0	0	1	0	0	0	14937	1493	52	3	590	3	SOHLH2	13	36748941	Missense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10		36748941	78420937	25	28633											
HEATR5A	25938	hgsc.bcm.edu;ucsc.edu	37	14	31819067	31819067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	A	31819067	G	A	31819067	3	1	487	1	0	0	0	0	1	0	0	0	7038	1294	45	2	3580	2	HEATR5A	14	31819067	Missense_Mutation	SNP	G	TCGA-CJ-4876-01A-01D-1373-10		31819067	75530473	26	28634											
TRAF3	7187	hgsc.bcm.edu	37	14	103357741	103357741	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	103357741	C	G	103357741	3	3	487	1	0	0	0	0	1	0	0	0	16451	893	31	4	832	4	TRAF3	14	103357741	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10	71538674	103357741	3991799	27	28635											
AKAP13	11214	hgsc.bcm.edu;ucsc.edu	37	15	86198698	86198698	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	T	86198698	C	T	86198698	2	4	487	1	0	0	0	0	0	0	0	1	449	639	23	1		1	AKAP13	15	86198698	Silent	SNP	C	TCGA-CJ-4876-01A-01D-1373-10		86198698	16332694	28	28636											
TMEM186	25880	hgsc.bcm.edu	37	16	8889990	8889990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	T	8889990	G	T	8889990	3	4	487	1	0	0	0	0	1	0	0	0	16120	1377	48	4	184	4	TMEM186	16	8889990	Missense_Mutation	SNP	G	TCGA-CJ-4876-01A-01D-1373-10		8889990	81464763	29	28637											
ZDHHC1	29800	hgsc.bcm.edu	37	16	67428940	67428940	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	A	67428940	T	A	67428940	4	1	487	1	0	0	0	0	0	1	0	0	17612	1850	64	5	270	5	ZDHHC1	16	67428940	Nonsense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10	58538950	67428940	22925813	30	28638											
COG4	25839	hgsc.bcm.edu;ucsc.edu	37	16	70546246	70546246	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	A	70546246	T	A	70546246	4	1	487	1	0	0	0	0	0	1	0	0	3662	1821	63	5	1795	5	COG4	16	70546246	Nonsense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10	3117306	70546246	19808507	31	28639											
PIK3R5	23533	hgsc.bcm.edu	37	17	8791992	8791992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	8791992	A	C	8791992	3	2	487	1	0	0	0	0	1	0	0	0	11929	304	11	5	1570	5	PIK3R5	17	8791992	Missense_Mutation	SNP	A	TCGA-CJ-4876-01A-01D-1373-10		8791992	72403218	32	28640											
MKS1	54903	hgsc.bcm.edu;ucsc.edu	37	17	56283700	56283700	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	56283700	C	G	56283700	3	3	487	1	0	0	0	0	1	0	0	0	9616	565	20	4	155	4	MKS1	17	56283700	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10	47491708	56283700	24911510	33	28641											
PRKCA	5578	hgsc.bcm.edu	37	17	64800059	64800059	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	64800059	T	C	64800059	2	2	487	1	0	0	0	0	0	0	0	1	12517	1432	50	3		3	PRKCA	17	64800059	Silent	SNP	T	TCGA-CJ-4876-01A-01D-1373-10	8516359	64800059	16395151	34	28642											
ST6GALNAC2	10610	hgsc.bcm.edu;ucsc.edu	37	17	74562266	74562266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	T	74562266	C	T	74562266	3	4	487	1	0	0	0	0	1	0	0	0	15236	710	25	2	83	2	ST6GALNAC2	17	74562266	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10	9762207	74562266	6632944	35	28643											
B4GALT6	9331	hgsc.bcm.edu;ucsc.edu	37	18	29218625	29218625	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	T	29218625	C	T	29218625	2	4	487	1	0	0	0	0	0	0	0	1	1275	523	19	1		1	B4GALT6	18	29218625	Silent	SNP	C	TCGA-CJ-4876-01A-01D-1373-10		29218625	48858623	36	28644											
KDM4B	23030	hgsc.bcm.edu	37	19	5077475	5077475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	A	5077475	C	A	5077475	3	1	487	1	0	0	0	0	1	0	0	0	8136	825	29	4	796	4	KDM4B	19	5077475	Missense_Mutation	SNP	C	TCGA-CJ-4876-01A-01D-1373-10		5077475	54051508	37	28645											
TBCB	1155	hgsc.bcm.edu;ucsc.edu	37	19	36611673	36611673	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	T	36611673	A	T	36611673	3	4	487	1	0	0	0	0	1	0	0	0	15642	391	14	5	330	5	TBCB	19	36611673	Missense_Mutation	SNP	A	TCGA-CJ-4876-01A-01D-1373-10	31534198	36611673	22517310	38	28646											
PRX	57716	hgsc.bcm.edu	37	19	40902439	40902439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	40902439	T	C	40902439	3	2	487	1	0	0	0	0	1	0	0	0	12652	1609	56	3	2569	3	PRX	19	40902439	Missense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10	4290766	40902439	18226544	39	28647											
KLK13	26085	hgsc.bcm.edu	37	19	51561875	51561875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	51561875	A	G	51561875	3	3	487	1	0	0	0	0	1	0	0	0	8408	159	6	3	276	3	KLK13	19	51561875	Missense_Mutation	SNP	A	TCGA-CJ-4876-01A-01D-1373-10	10659436	51561875	7567108	40	28648											
LAIR2	3904	hgsc.bcm.edu	37	19	55020248	55020248	+	Missense_Mutation	SNP	G	G	C	rs12949	by1000genomes	TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	55020248	G	C	55020248	3	2	487	1	0	0	0	0	1	0	0	0	8610	971	34	4	382	4	LAIR2	19	55020248	Missense_Mutation	SNP	G	TCGA-CJ-4876-01A-01D-1373-10	3458373	55020248	4108735	41	28649											
KIF16B	55614	hgsc.bcm.edu	37	20	16359582	16359582	+	Missense_Mutation	SNP	T	T	C	rs34336583	bycluster;byfrequency;by1000genomes	TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	C	16359582	T	C	16359582	3	2	487	1	0	0	0	0	1	0	0	0	8285	1696	59	3	920	3	KIF16B	20	16359582	Missense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10		16359582	46665938	42	28650											
CCDC120	90060	hgsc.bcm.edu	37	X	48919830	48919830	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4876-01A-01D-1373-10	TCGA-CJ-4876-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	852c4bf6-3ec9-4070-8e5f-78d12686ccac	dc4d5943-3138-4ed1-a452-21dbd520c16c	G	48919830	T	G	48919830	3	3	487	1	0	0	0	0	1	0	0	0	2758	1435	50	5	25	5	CCDC120	23	48919830	Missense_Mutation	SNP	T	TCGA-CJ-4876-01A-01D-1373-10		48919830	106350730	43	28651											
LDLRAD1	388633	hgsc.bcm.edu;ucsc.edu	37	1	54477874	54477874	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	T	54477874	C	T	54477874	2	4	488	1	0	0	0	0	0	0	0	1	8712	610	22	2		2	LDLRAD1	1	54477874	Silent	SNP	C	TCGA-CJ-4878-01A-01D-1373-10		54477874	194772747	1	28652											
HFM1	164045	hgsc.bcm.edu;ucsc.edu	37	1	91840948	91840948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	C	91840948	G	C	91840948	3	2	488	1	0	0	0	0	1	0	0	0	7090	971	34	4	2763	4	HFM1	1	91840948	Missense_Mutation	SNP	G	TCGA-CJ-4878-01A-01D-1373-10	37363074	91840948	157409673	2	28653											
C1orf59	0	hgsc.bcm.edu;ucsc.edu	37	1	109191427	109191427	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	109191427	C	G	109191427	3	3	488	1	0	0	0	0	1	0	0	0	2053	603	21	4	242	4	C1orf59	1	109191427	Missense_Mutation	SNP	C	TCGA-CJ-4878-01A-01D-1373-10	17350479	109191427	140059194	3	28654											
APOB	338	hgsc.bcm.edu;ucsc.edu	37	2	21224731	21224731	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	21224731	A	G	21224731	2	3	488	1	0	0	0	0	0	0	0	1	785	126	5	3		3	APOB	2	21224731	Silent	SNP	A	TCGA-CJ-4878-01A-01D-1373-10		21224731	221974642	4	28655											
ZDBF2	57683	hgsc.bcm.edu	37	2	207170013	207170013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	207170013	A	G	207170013	3	3	488	1	0	0	0	0	1	0	0	0	17611	217	8	3	771	3	ZDBF2	2	207170013	Missense_Mutation	SNP	A	TCGA-CJ-4878-01A-01D-1373-10	185945282	207170013	36029360	5	28656											
RHBDD1	84236	hgsc.bcm.edu;ucsc.edu	37	2	227771560	227771560	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	C	227771560	T	C	227771560	2	2	488	1	0	0	0	0	0	0	0	1	13329	1538	54	3		3	RHBDD1	2	227771560	Silent	SNP	T	TCGA-CJ-4878-01A-01D-1373-10	20601547	227771560	15427813	6	28657											
ACTR8	93973	hgsc.bcm.edu;ucsc.edu	37	3	53916098	53916098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	C	53916098	T	C	53916098	3	2	488	1	0	0	0	0	1	0	0	0	217	1783	62	3	1895	3	ACTR8	3	53916098	Missense_Mutation	SNP	T	TCGA-CJ-4878-01A-01D-1373-10		53916098	144106332	7	28658											
DAPP1	27071	hgsc.bcm.edu;ucsc.edu	37	4	100756843	100756843	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	T	100756843	C	T	100756843	2	4	488	1	0	0	0	0	0	0	0	1	4241	535	19	1		1	DAPP1	4	100756843	Silent	SNP	C	TCGA-CJ-4878-01A-01D-1373-10		100756843	90397433	8	28659											
TAS2R1	50834	hgsc.bcm.edu;ucsc.edu	37	5	9629743	9629743	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	9629743	C	G	9629743	2	3	488	1	0	0	0	0	0	0	0	1	15577	697	25	4		4	TAS2R1	5	9629743	Silent	SNP	C	TCGA-CJ-4878-01A-01D-1373-10		9629743	171285517	9	28660											
BTN1A1	696	hgsc.bcm.edu;ucsc.edu	37	6	26509059	26509059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	A	26509059	T	A	26509059	3	1	488	1	0	0	0	0	1	0	0	0	1561	1551	54	5	1264	5	BTN1A1	6	26509059	Missense_Mutation	SNP	T	TCGA-CJ-4878-01A-01D-1373-10		26509059	144606008	10	28661											
MAP3K5	4217	hgsc.bcm.edu;ucsc.edu	37	6	136879991	136879991	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	C	136879991	T	C	136879991	2	2	488	1	0	0	0	0	0	0	0	1	9260	1393	49	3		3	MAP3K5	6	136879991	Silent	SNP	T	TCGA-CJ-4878-01A-01D-1373-10	110370932	136879991	34235076	11	28662											
ADAP1	11033	hgsc.bcm.edu	37	7	975057	975057	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	A	975057	T	A	975057	3	1	488	1	0	0	0	0	1	0	0	0	279	1609	56	5	997	5	ADAP1	7	975057	Missense_Mutation	SNP	T	TCGA-CJ-4878-01A-01D-1373-10		975057	158163606	12	28663											
ABCA13	154664	hgsc.bcm.edu	37	7	48452147	48452147	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	A	48452147	G	A	48452147	2	1	488	1	0	0	0	0	0	0	0	1	31	1103	39	1		1	ABCA13	7	48452147	Silent	SNP	G	TCGA-CJ-4878-01A-01D-1373-10	47477090	48452147	110686516	13	28664											
PCLO	27445	hgsc.bcm.edu;ucsc.edu	37	7	82585659	82585659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	T	82585659	C	T	82585659	3	4	488	1	0	0	0	0	1	0	0	0	11590	797	28	2	10919	2	PCLO	7	82585659	Missense_Mutation	SNP	C	TCGA-CJ-4878-01A-01D-1373-10	34133512	82585659	76553004	14	28665											
ASNS	440	hgsc.bcm.edu;ucsc.edu	37	7	97487606	97487606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	97487606	A	G	97487606	3	3	488	1	0	0	0	0	1	0	0	0	1048	372	13	3	826	3	ASNS	7	97487606	Missense_Mutation	SNP	A	TCGA-CJ-4878-01A-01D-1373-10	14901947	97487606	61651057	15	28666											
ADAM2	2515	hgsc.bcm.edu;ucsc.edu	37	8	39666986	39666986	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	T	39666986	C	T	39666986	5	4	488	1	0	0	0	0	0	0	1	0	241	811	28	2	1750	2	ADAM2	8	39666986	Splice_Site	SNP	C	TCGA-CJ-4878-01A-01D-1373-10		39666986	106697036	16	28667											
GLDC	2731	hgsc.bcm.edu	37	9	6536219	6536219	+	Missense_Mutation	SNP	T	T	C	rs141152043	byfrequency	TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	C	6536219	T	C	6536219	3	2	488	1	0	0	0	0	1	0	0	0	6440	1464	51	3	391	3	GLDC	9	6536219	Missense_Mutation	SNP	T	TCGA-CJ-4878-01A-01D-1373-10		6536219	134677212	17	28668											
FRMPD2	143162	hgsc.bcm.edu;ucsc.edu	37	10	49450292	49450292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	49450292	A	G	49450292	3	3	488	1	0	0	0	0	1	0	0	0	6065	43	2	3	3550	3	FRMPD2	10	49450292	Missense_Mutation	SNP	A	TCGA-CJ-4878-01A-01D-1373-10		49450292	86084455	18	28669											
AS3MT	57412	hgsc.bcm.edu;ucsc.edu	37	10	104632879	104632879	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	C	104632879	A	C	104632879	3	2	488	1	0	0	0	0	1	0	0	0	1005	275	10	5	365	5	AS3MT	10	104632879	Missense_Mutation	SNP	A	TCGA-CJ-4878-01A-01D-1373-10	55182587	104632879	30901868	19	28670											
TRIM3	10612	hgsc.bcm.edu	37	11	6477381	6477381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	C	6477381	T	C	6477381	3	2	488	1	0	0	0	0	1	0	0	0	16516	1783	62	3	804	3	TRIM3	11	6477381	Missense_Mutation	SNP	T	TCGA-CJ-4878-01A-01D-1373-10		6477381	128529135	20	28671											
OR10A6	390093	hgsc.bcm.edu;ucsc.edu	37	11	7949711	7949711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	A	7949711	G	A	7949711	3	1	488	1	0	0	0	0	1	0	0	0	10901	1174	41	2	448	2	OR10A6	11	7949711	Missense_Mutation	SNP	G	TCGA-CJ-4878-01A-01D-1373-10	1472330	7949711	127056805	21	28672											
IGSF22	283284	hgsc.bcm.edu;ucsc.edu	37	11	18738274	18738274	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	T	18738274	C	T	18738274	5	4	488	1	0	0	0	0	0	0	1	0	7607	550	19	1	2789	1	IGSF22	11	18738274	Splice_Site	SNP	C	TCGA-CJ-4878-01A-01D-1373-10	10788563	18738274	116268242	22	28673											
DCDC1	341019	hgsc.bcm.edu;ucsc.edu	37	11	31327796	31327796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	T	31327796	C	T	31327796	3	4	488	1	0	0	0	0	1	0	0	0	4286	478	17	2	510	2	DCDC1	11	31327796	Missense_Mutation	SNP	C	TCGA-CJ-4878-01A-01D-1373-10	12589522	31327796	103678720	23	28674											
SLC16A7	9194	hgsc.bcm.edu;ucsc.edu	37	12	60169209	60169209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	60169209	T	G	60169209	3	3	488	1	0	0	0	0	1	0	0	0	14426	1667	58	5	1143	5	SLC16A7	12	60169209	Missense_Mutation	SNP	T	TCGA-CJ-4878-01A-01D-1373-10		60169209	73682686	24	28675											
CCNA1	8900	hgsc.bcm.edu;ucsc.edu	37	13	37007258	37007258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	A	37007258	G	A	37007258	3	1	488	1	0	0	0	0	1	0	0	0	2911	1377	48	2	203	2	CCNA1	13	37007258	Missense_Mutation	SNP	G	TCGA-CJ-4878-01A-01D-1373-10		37007258	78162620	25	28676											
LRFN5	145581	hgsc.bcm.edu;ucsc.edu	37	14	42356392	42356392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	T	42356392	G	T	42356392	3	4	488	1	0	0	0	0	1	0	0	0	8948	991	35	4	566	4	LRFN5	14	42356392	Missense_Mutation	SNP	G	TCGA-CJ-4878-01A-01D-1373-10		42356392	64993148	26	28677											
KIF23	9493	hgsc.bcm.edu;ucsc.edu	37	15	69714040	69714040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	C	69714040	T	C	69714040	3	2	488	1	0	0	0	0	1	0	0	0	8298	1609	56	3	279	3	KIF23	15	69714040	Missense_Mutation	SNP	T	TCGA-CJ-4878-01A-01D-1373-10		69714040	32817352	27	28678											
DECR2	26063	hgsc.bcm.edu	37	16	460352	460352	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	460352	T	G	460352	4	3	488	1	0	0	0	0	0	1	0	0	4385	1471	51	5	465	5	DECR2	16	460352	Nonsense_Mutation	SNP	T	TCGA-CJ-4878-01A-01D-1373-10		460352	89894401	28	28679											
RBBP6	5930	hgsc.bcm.edu;ucsc.edu	37	16	24573318	24573318	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	24573318	T	G	24573318	2	3	488	1	0	0	0	0	0	0	0	1	13116	1596	56	5		5	RBBP6	16	24573318	Silent	SNP	T	TCGA-CJ-4878-01A-01D-1373-10	24112966	24573318	65781435	29	28680											
USP36	57602	hgsc.bcm.edu	37	17	76810621	76810621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	A	76810621	G	A	76810621	3	1	488	1	0	0	0	0	1	0	0	0	17079	1116	39	1	2374	1	USP36	17	76810621	Missense_Mutation	SNP	G	TCGA-CJ-4878-01A-01D-1373-10		76810621	4384589	30	28681											
TXN2	25828	hgsc.bcm.edu;ucsc.edu	37	22	36872895	36872895	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	G	36872895	C	G	36872895	3	3	488	1	0	0	0	0	1	0	0	0	16803	855	30	4	236	4	TXN2	22	36872895	Missense_Mutation	SNP	C	TCGA-CJ-4878-01A-01D-1373-10		36872895	14431671	31	28682											
PARVG	64098	hgsc.bcm.edu;ucsc.edu	37	22	44592248	44592248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	A	44592248	C	A	44592248	3	1	488	1	0	0	0	0	1	0	0	0	11477	595	21	4	698	4	PARVG	22	44592248	Missense_Mutation	SNP	C	TCGA-CJ-4878-01A-01D-1373-10	7719353	44592248	6712318	32	28683											
FGD1	2245	hgsc.bcm.edu;ucsc.edu	37	X	54491907	54491907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4878-01A-01D-1373-10	TCGA-CJ-4878-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	19049209-7ee5-4198-8a2c-036bce104f89	b62cf3a9-0b6e-42a4-9e72-5751abb2c017	A	54491907	G	A	54491907	3	1	488	1	0	0	0	0	1	0	0	0	5839	1174	41	2	1316	2	FGD1	23	54491907	Missense_Mutation	SNP	G	TCGA-CJ-4878-01A-01D-1373-10		54491907	100778653	33	28684											
NBPF3	84224	hgsc.bcm.edu	37	1	21806704	21806704	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	G	21806704	C	G	21806704	3	3	489	1	0	0	0	0	1	0	0	0	10204	913	32	4	1407	4	NBPF3	1	21806704	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10		21806704	227443917	1	28685											
ELAVL4	1996	hgsc.bcm.edu	37	1	50666792	50666792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	50666792	G	T	50666792	3	4	489	1	0	0	0	0	1	0	0	0	5054	1087	38	4	1210	4	ELAVL4	1	50666792	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	28860088	50666792	198583829	2	28686											
PTGFR	5737	hgsc.bcm.edu	37	1	78958515	78958515	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	78958515	C	A	78958515	2	1	489	1	0	0	0	0	0	0	0	1	12760	639	23	4		4	PTGFR	1	78958515	Silent	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	28291723	78958515	170292106	3	28687											
FLAD1	80308	hgsc.bcm.edu	37	1	154960802	154960802	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	154960802	G	A	154960802	2	1	489	1	0	0	0	0	0	0	0	1	5927	962	34	2		2	FLAD1	1	154960802	Silent	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	76002287	154960802	94289819	4	28688											
BCAN	63827	hgsc.bcm.edu	37	1	156622354	156622354	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	G	156622354	C	G	156622354	3	3	489	1	0	0	0	0	1	0	0	0	1345	507	18	4	1638	4	BCAN	1	156622354	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	1661552	156622354	92628267	5	28689											
NUF2	83540	hgsc.bcm.edu;ucsc.edu	37	1	163297295	163297295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	163297295	G	A	163297295	3	1	489	1	0	0	0	0	1	0	0	0	10754	1290	45	2	147	2	NUF2	1	163297295	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	6674941	163297295	85953326	6	28690											
MIA3	375056	hgsc.bcm.edu;ucsc.edu	37	1	222826679	222826679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	C	222826679	G	C	222826679	3	2	489	1	0	0	0	0	1	0	0	0	9572	1174	41	4	4377	4	MIA3	1	222826679	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	59529384	222826679	26423942	7	28691											
C1orf55	0	hgsc.bcm.edu;ucsc.edu	37	1	226180618	226180618	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	C	226180618	T	C	226180618	2	2	489	1	0	0	0	0	0	0	0	1	2049	1664	58	3		3	C1orf55	1	226180618	Silent	SNP	T	TCGA-CJ-4881-01A-01D-1373-10	3353939	226180618	23070003	8	28692											
GALNT2	2590	hgsc.bcm.edu;ucsc.edu	37	1	230410256	230410256	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	C	230410256	G	C	230410256	2	2	489	1	0	0	0	0	0	0	0	1	6220	1219	43	4		4	GALNT2	1	230410256	Silent	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	4229638	230410256	18840365	9	28693											
ITGA6	3655	hgsc.bcm.edu;ucsc.edu	37	2	173356019	173356019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	C	173356019	T	C	173356019	3	2	489	1	0	0	0	0	1	0	0	0	7887	1609	56	3	2935	3	ITGA6	2	173356019	Missense_Mutation	SNP	T	TCGA-CJ-4881-01A-01D-1373-10		173356019	69843354	10	28694											
NEK10	152110	hgsc.bcm.edu	37	3	27350480	27350480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	27350480	A	T	27350480	3	4	489	1	0	0	0	0	1	0	0	0	10329	72	3	5	1545	5	NEK10	3	27350480	Missense_Mutation	SNP	A	TCGA-CJ-4881-01A-01D-1373-10		27350480	170671950	11	28695											
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52442600	52442600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	C	52442600	G	C	52442600	3	2	489	1	0	0	0	0	1	0	0	0	1311	991	35	4	2100	4	BAP1	3	52442600	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	25092120	52442600	145579830	12	28696											
RPN1	6184	hgsc.bcm.edu	37	3	128356662	128356662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	128356662	C	A	128356662	3	1	489	1	0	0	0	0	1	0	0	0	13620	913	32	4	1242	4	RPN1	3	128356662	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	75914062	128356662	69665768	13	28697											
MYNN	55892	hgsc.bcm.edu	37	3	169504386	169504386	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	G	169504386	C	G	169504386	3	3	489	1	0	0	0	0	1	0	0	0	10068	855	30	4	1779	4	MYNN	3	169504386	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	41147724	169504386	28518044	14	28698											
PPEF2	5470	hgsc.bcm.edu	37	4	76797629	76797629	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	76797629	G	A	76797629	2	1	489	1	0	0	0	0	0	0	0	1	12315	1311	46	2		2	PPEF2	4	76797629	Silent	SNP	G	TCGA-CJ-4881-01A-01D-1373-10		76797629	114356647	15	28699											
SLU7	10569	hgsc.bcm.edu;ucsc.edu	37	5	159833540	159833540	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	G	159833540	T	G	159833540	3	3	489	1	0	0	0	0	1	0	0	0	14768	1821	63	5	558	5	SLU7	5	159833540	Missense_Mutation	SNP	T	TCGA-CJ-4881-01A-01D-1373-10		159833540	21081720	16	28700											
TNFRSF21	27242	hgsc.bcm.edu;ucsc.edu	37	6	47251933	47251933	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	47251933	G	A	47251933	2	1	489	1	0	0	0	0	0	0	0	1	16307	1280	45	2		2	TNFRSF21	6	47251933	Silent	SNP	G	TCGA-CJ-4881-01A-01D-1373-10		47251933	123863134	17	28701											
PRKDC	5591	hgsc.bcm.edu	37	8	48711870	48711870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	48711870	A	T	48711870	3	4	489	1	0	0	0	0	1	0	0	0	12531	304	11	5	2248	5	PRKDC	8	48711870	Missense_Mutation	SNP	A	TCGA-CJ-4881-01A-01D-1373-10		48711870	97652152	18	28702											
ABRA	137735	hgsc.bcm.edu	37	8	107773283	107773283	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	G	107773283	C	G	107773283	2	3	489	1	0	0	0	0	0	0	0	1	100	813	29	4		4	ABRA	8	107773283	Silent	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	59061413	107773283	38590739	19	28703											
FAM83A	84985	hgsc.bcm.edu	37	8	124195554	124195554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	124195554	G	A	124195554	3	1	489	1	0	0	0	0	1	0	0	0	5640	1087	38	1	460	1	FAM83A	8	124195554	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	16422271	124195554	22168468	20	28704											
DENND4C	55667	hgsc.bcm.edu	37	9	19331996	19331996	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	19331996	A	T	19331996	3	4	489	1	0	0	0	0	1	0	0	0	4437	98	4	5	1616	5	DENND4C	9	19331996	Missense_Mutation	SNP	A	TCGA-CJ-4881-01A-01D-1373-10		19331996	121881435	21	28705											
FAM75A3	0	hgsc.bcm.edu	37	9	40704227	40704227	+	Silent	SNP	C	T	T	rs67937937	bycluster	TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	40704227	T	T	40704227	2	4	489	1	0	0	0	0	0	0	0	1	5628	535	19	1		1	FAM75A3	9	40704227	Silent	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	21372231	40704227	100509204	22	28706											
PDE6C	5146	hgsc.bcm.edu;ucsc.edu	37	10	95372619	95372619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	95372619	C	A	95372619	3	1	489	1	0	0	0	0	1	0	0	0	11654	855	30	4	139	4	PDE6C	10	95372619	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10		95372619	40162128	23	28707											
ADAMTS20	80070	hgsc.bcm.edu;ucsc.edu	37	12	43825222	43825222	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	43825222	G	A	43825222	2	1	489	1	0	0	0	0	0	0	0	1	266	958	34	2		2	ADAMTS20	12	43825222	Silent	SNP	G	TCGA-CJ-4881-01A-01D-1373-10		43825222	90026673	24	28708											
KRT6C	286887	hgsc.bcm.edu	37	12	52863663	52863663	+	Silent	SNP	C	C	T	rs11540291		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	52863663	C	T	52863663	2	4	489	1	0	0	0	0	0	0	0	1	8489	697	25	2		2	KRT6C	12	52863663	Silent	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	9038441	52863663	80988232	25	28709											
ERBB3	2065	hgsc.bcm.edu;ucsc.edu	37	12	56478808	56478808	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	56478808	C	T	56478808	2	4	489	1	0	0	0	0	0	0	0	1	5210	871	31	1		1	ERBB3	12	56478808	Silent	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	3615145	56478808	77373087	26	28710											
PTPRB	5787	hgsc.bcm.edu	37	12	70960250	70960250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	G	70960250	A	G	70960250	3	3	489	1	0	0	0	0	1	0	0	0	12809	304	11	3	2858	3	PTPRB	12	70960250	Missense_Mutation	SNP	A	TCGA-CJ-4881-01A-01D-1373-10	14481442	70960250	62891645	27	28711											
DTX1	1840	hgsc.bcm.edu	37	12	113531890	113531890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	C	113531890	A	C	113531890	3	2	489	1	0	0	0	0	1	0	0	0	4795	14	1	5	1231	5	DTX1	12	113531890	Missense_Mutation	SNP	A	TCGA-CJ-4881-01A-01D-1373-10	42571640	113531890	20320005	28	28712											
CAMKK2	10645	hgsc.bcm.edu;ucsc.edu	37	12	121698132	121698132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	121698132	A	T	121698132	3	4	489	1	0	0	0	0	1	0	0	0	2609	330	12	5	1034	5	CAMKK2	12	121698132	Missense_Mutation	SNP	A	TCGA-CJ-4881-01A-01D-1373-10	8166242	121698132	12153763	29	28713											
SCARB1	949	hgsc.bcm.edu;ucsc.edu	37	12	125279747	125279747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	125279747	C	A	125279747	3	1	489	1	0	0	0	0	1	0	0	0	13894	739	26	4	473	4	SCARB1	12	125279747	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	3581615	125279747	8572148	30	28714											
CARKD	55739	hgsc.bcm.edu	37	13	111287086	111287086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	111287086	C	A	111287086	3	1	489	1	0	0	0	0	1	0	0	0	2656	623	22	4	640	4	CARKD	13	111287086	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10		111287086	3882792	31	28715											
AP1G2	8906	hgsc.bcm.edu	37	14	24035342	24035342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	24035342	G	A	24035342	3	1	489	1	0	0	0	0	1	0	0	0	733	1115	39	1	1930	1	AP1G2	14	24035342	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10		24035342	83314198	32	28716											
SENP8	123228	hgsc.bcm.edu;ucsc.edu	37	15	72432093	72432093	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	C	72432093	G	C	72432093	3	2	489	1	0	0	0	0	1	0	0	0	14065	1020	36	4	131	4	SENP8	15	72432093	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10		72432093	30099299	33	28717											
KIAA0430	9665	hgsc.bcm.edu;ucsc.edu	37	16	15690639	15690639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	15690639	C	A	15690639	3	1	489	1	0	0	0	0	1	0	0	0	8184	855	30	4	92	4	KIAA0430	16	15690639	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10		15690639	74664114	34	28718											
RBBP6	5930	hgsc.bcm.edu;ucsc.edu	37	16	24581248	24581248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	C	24581248	G	C	24581248	3	2	489	1	0	0	0	0	1	0	0	0	13116	933	33	4	3357	4	RBBP6	16	24581248	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	8890609	24581248	65773505	35	28719											
BCAR1	9564	hgsc.bcm.edu	37	16	75276448	75276448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	75276448	C	A	75276448	3	1	489	1	0	0	0	0	1	0	0	0	1348	710	25	4	2144	4	BCAR1	16	75276448	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	50695200	75276448	15078305	36	28720											
CDK12	51755	hgsc.bcm.edu	37	17	37618612	37618612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	37618612	C	A	37618612	3	1	489	1	0	0	0	0	1	0	0	0	3130	535	19	4	290	4	CDK12	17	37618612	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10		37618612	43576598	37	28721											
CDK5RAP3	80279	hgsc.bcm.edu;ucsc.edu	37	17	46051372	46051372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	46051372	G	T	46051372	3	4	489	1	0	0	0	0	1	0	0	0	3149	1203	42	4	274	4	CDK5RAP3	17	46051372	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	8432760	46051372	35143838	38	28722											
BPTF	2186	hgsc.bcm.edu;ucsc.edu	37	17	65942187	65942187	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	65942187	C	T	65942187	4	4	489	1	0	0	0	0	0	1	0	0	1497	827	29	2	7831	2	BPTF	17	65942187	Nonsense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10	19890815	65942187	15253023	39	28723											
KIAA1632	0	hgsc.bcm.edu;ucsc.edu	37	18	43523194	43523194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	43523194	C	T	43523194	3	4	489	1	0	0	0	0	1	0	0	0	8256	478	17	2	6007	2	KIAA1632	18	43523194	Missense_Mutation	SNP	C	TCGA-CJ-4881-01A-01D-1373-10		43523194	34554054	40	28724											
OR7D2	162998	hgsc.bcm.edu;ucsc.edu	37	19	9296955	9296955	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	G	9296955	A	G	9296955	2	3	489	1	0	0	0	0	0	0	0	1	11226	349	13	3		3	OR7D2	19	9296955	Silent	SNP	A	TCGA-CJ-4881-01A-01D-1373-10		9296955	49832028	41	28725											
PKN1	5585	hgsc.bcm.edu;ucsc.edu	37	19	14580588	14580588	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	14580588	G	A	14580588	2	1	489	1	0	0	0	0	0	0	0	1	11986	1335	47	2		2	PKN1	19	14580588	Silent	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	5283633	14580588	44548395	42	28726											
AKAP8L	26993	hgsc.bcm.edu;ucsc.edu	37	19	15511799	15511799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	15511799	G	A	15511799	3	1	489	1	0	0	0	0	1	0	0	0	458	1203	42	2	1104	2	AKAP8L	19	15511799	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	931211	15511799	43617184	43	28727											
FAM129C	199786	hgsc.bcm.edu;ucsc.edu	37	19	17664214	17664214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	17664214	A	T	17664214	3	4	489	1	0	0	0	0	1	0	0	0	5442	333	12	5	2115	5	FAM129C	19	17664214	Missense_Mutation	SNP	A	TCGA-CJ-4881-01A-01D-1373-10	2152415	17664214	41464769	44	28728											
OSCAR	126014	hgsc.bcm.edu	37	19	54600307	54600307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	54600307	G	A	54600307	3	1	489	1	0	0	0	0	1	0	0	0	11292	1232	43	2	782	2	OSCAR	19	54600307	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	36936093	54600307	4528676	45	28729											
COL6A2	1292	hgsc.bcm.edu	37	21	47532722	47532722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	T	47532722	A	T	47532722	3	4	489	1	0	0	0	0	1	0	0	0	3702	159	6	5	729	5	COL6A2	21	47532722	Missense_Mutation	SNP	A	TCGA-CJ-4881-01A-01D-1373-10		47532722	597173	46	28730											
ZMAT5	55954	hgsc.bcm.edu	37	22	30134342	30134342	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	30134342	C	A	30134342	2	1	489	1	0	0	0	0	0	0	0	1	17707	726	26	4		4	ZMAT5	22	30134342	Silent	SNP	C	TCGA-CJ-4881-01A-01D-1373-10		30134342	21170224	47	28731											
ELFN2	114794	hgsc.bcm.edu	37	22	37769914	37769914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	37769914	G	A	37769914	3	1	489	1	0	0	0	0	1	0	0	0	5060	971	34	2	805	2	ELFN2	22	37769914	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	7635572	37769914	13534652	48	28732											
USP9X	8239	hgsc.bcm.edu;ucsc.edu	37	X	41077774	41077774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	C	41077774	T	C	41077774	3	2	489	1	0	0	0	0	1	0	0	0	17102	1406	49	3	6501	3	USP9X	23	41077774	Missense_Mutation	SNP	T	TCGA-CJ-4881-01A-01D-1373-10		41077774	114192786	49	28733											
AKAP4	8852	hgsc.bcm.edu;ucsc.edu	37	X	49963344	49963344	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	49963344	G	A	49963344	2	1	489	1	0	0	0	0	0	0	0	1	453	1372	48	2		2	AKAP4	23	49963344	Silent	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	8885570	49963344	105307216	50	28734											
FAAH2	158584	hgsc.bcm.edu	37	X	57358084	57358084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4881-01A-01D-1373-10	TCGA-CJ-4881-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	ae20e2d0-5d39-4a94-a9ff-dee71503cbfe	290dd57c-0f01-431d-8b72-5f25f1a00ca7	A	57358084	G	A	57358084	3	1	489	1	0	0	0	0	1	0	0	0	5358	942	33	2	480	2	FAAH2	23	57358084	Missense_Mutation	SNP	G	TCGA-CJ-4881-01A-01D-1373-10	7394740	57358084	97912476	51	28735											
MFSD2A	84879	broad.mit.edu;hgsc.bcm.edu	37	1	40434358	40434358	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	40434358	A	G	40434358	2	3	490	1	0	0	0	0	0	0	0	1	9537	11	1	3		3	MFSD2A	1	40434358	Silent	SNP	A	TCGA-CJ-4882-01A-02D-1429-08		40434358	208816263	1	28736											
POMGNT1	55624	broad.mit.edu	37	1	46658993	46658993	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	46658993	G	G	46658993	3	3	490	1	0	0	0	0	1	0	0	0	12250	1493	52	5	932	5	POMGNT1	1	46658993	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	6224635	46658993	202591628	2	28737											
SYCP1	6847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	115489894	115489894	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	115489894	G	T	115489894	4	4	490	1	0	0	0	0	0	1	0	0	15443	1291	45	4	2377	4	SYCP1	1	115489894	Nonsense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	68830901	115489894	133760727	3	28738											
NES	10763	broad.mit.edu	37	1	156646329	156646329	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	156646329	A	A	156646329	3	1	490	1	0	0	0	0	1	0	0	0	10344	1783	62	5	4153	5	NES	1	156646329	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	41156435	156646329	92604292	4	28739											
DCAF8	50717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160209814	160209814	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	160209814	A	G	160209814	2	3	490	1	0	0	0	0	0	0	0	1	4278	214	8	3		3	DCAF8	1	160209814	Silent	SNP	A	TCGA-CJ-4882-01A-02D-1429-08	3563485	160209814	89040807	5	28740											
DYRK3	8444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	206822277	206822277	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	206822277	C	T	206822277	2	4	490	1	0	0	0	0	0	0	0	1	4859	610	22	2		2	DYRK3	1	206822277	Silent	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	46612463	206822277	42428344	6	28741											
IL19	29949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	206972280	206972280	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	206972280	C	G	206972280	3	3	490	1	0	0	0	0	1	0	0	0	7656	855	30	4	43	4	IL19	1	206972280	Missense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	150003	206972280	42278341	7	28742											
PIGR	5284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	207108891	207108891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	207108891	A	G	207108891	3	3	490	1	0	0	0	0	1	0	0	0	11904	188	7	3	1004	3	PIGR	1	207108891	Missense_Mutation	SNP	A	TCGA-CJ-4882-01A-02D-1429-08	136611	207108891	42141730	8	28743											
SLC35F3	148641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	234454501	234454501	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	234454501	T	A	234454501	4	1	490	1	0	0	0	0	0	1	0	0	14603	1821	63	5	981	5	SLC35F3	1	234454501	Nonsense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	27345610	234454501	14796120	9	28744											
APOB	338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	21247881	21247881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	21247881	G	A	21247881	3	1	490	1	0	0	0	0	1	0	0	0	785	1203	42	2	11387	2	APOB	2	21247881	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08		21247881	221951492	10	28745											
SLC5A6	8884	broad.mit.edu;hgsc.bcm.edu	37	2	27429797	27429797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	27429797	C	A	27429797	3	1	490	1	0	0	0	0	1	0	0	0	14682	884	31	4	1556	4	SLC5A6	2	27429797	Missense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	6181916	27429797	215769576	11	28746											
PTPN4	5775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	120718482	120718482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	120718482	G	A	120718482	3	1	490	1	0	0	0	0	1	0	0	0	12803	1000	35	2	2319	2	PTPN4	2	120718482	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	93288685	120718482	122480891	12	28747											
LRP2	4036	broad.mit.edu	37	2	170136059	170136059	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	170136059	C	C	170136059	3	2	490	1	0	0	0	0	1	0	0	0	8963	1493	52	3	12851	3	LRP2	2	170136059	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	49417577	170136059	73063314	13	28748											
HAT1	8520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	172821890	172821890	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	172821890	T	G	172821890	3	3	490	1	0	0	0	0	1	0	0	0	6971	1435	50	5	359	5	HAT1	2	172821890	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	2685831	172821890	70377483	14	28749											
TTN	7273	broad.mit.edu;hgsc.bcm.edu	37	2	179424711	179424711	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	179424711	T	A	179424711	2	1	490	1	0	0	0	0	0	0	0	1	16747	1799	63	5		5	TTN	2	179424711	Silent	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	6602821	179424711	63774662	15	28750											
TTN	7273	broad.mit.edu	37	2	179480458	179480458	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	179480458	G	G	179480458	3	3	490	1	0	0	0	0	1	0	0	0	16747	922	32	4	59743	4	TTN	2	179480458	Missense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	55747	179480458	63718915	16	28751											
SLC19A3	80704	broad.mit.edu;ucsc.edu	37	2	228560780	228560780	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	228560780	A	A	228560780	3	1	490	1	0	0	0	0	1	0	0	0	14443	710	25	4	505	4	SLC19A3	2	228560780	Missense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	49080322	228560780	14638593	17	28752											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52443600	52443600	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	52443600	T	G	52443600	3	3	490	1	0	0	0	0	1	0	0	0	1311	1551	54	5	2157	5	BAP1	3	52443600	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08		52443600	145578830	18	28753											
A4GNT	51146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	137843364	137843364	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	137843364	T	C	137843364	2	2	490	1	0	0	0	0	0	0	0	1	7	1635	57	3		3	A4GNT	3	137843364	Silent	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	85399764	137843364	60179066	19	28754											
SIAH2	6478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	150460186	150460186	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	150460186	G	C	150460186	4	2	490	1	0	0	0	0	0	1	0	0	14313	1140	40	4	261	4	SIAH2	3	150460186	Nonsense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	12616822	150460186	47562244	20	28755											
ZNF518B	85460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	10447285	10447285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	10447285	T	C	10447285	3	2	490	1	0	0	0	0	1	0	0	0	17975	1841	64	3	2560	3	ZNF518B	4	10447285	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08		10447285	180706991	21	28756											
PCDH7	5099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	31144244	31144244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	31144244	G	T	31144244	3	4	490	1	0	0	0	0	1	0	0	0	11523	1290	45	4	3636	4	PCDH7	4	31144244	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	20696959	31144244	160010032	22	28757											
HADH	3033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	108935617	108935617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	108935617	A	G	108935617	3	3	490	1	0	0	0	0	1	0	0	0	6949	304	11	3	302	3	HADH	4	108935617	Missense_Mutation	SNP	A	TCGA-CJ-4882-01A-02D-1429-08	77791373	108935617	82218659	23	28758											
NRG2	9542	broad.mit.edu;hgsc.bcm.edu	37	5	139244754	139244754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	139244754	G	A	139244754	3	1	490	1	0	0	0	0	1	0	0	0	10655	1174	41	2	1469	2	NRG2	5	139244754	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08		139244754	41670506	24	28759											
RFX6	222546	broad.mit.edu;hgsc.bcm.edu	37	6	117248535	117248535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	117248535	G	T	117248535	3	4	490	1	0	0	0	0	1	0	0	0	13280	1377	48	4	2297	4	RFX6	6	117248535	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08		117248535	53866532	25	28760											
ZPBP	11055	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	50070788	50070788	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	50070788	A	T	50070788	2	4	490	1	0	0	0	0	0	0	0	1	18231	233	9	5		5	ZPBP	7	50070788	Silent	SNP	A	TCGA-CJ-4882-01A-02D-1429-08		50070788	109067875	26	28761											
TMEM130	222865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	98457932	98457932	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	98457932	G	A	98457932	4	1	490	1	0	0	0	0	0	1	0	0	16055	1357	47	2	910	2	TMEM130	7	98457932	Nonsense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	48387144	98457932	60680731	27	28762											
ZNF425	155054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	148802500	148802500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	148802500	T	G	148802500	3	3	490	1	0	0	0	0	1	0	0	0	17911	1841	64	5	1799	5	ZNF425	7	148802500	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	50344568	148802500	10336163	28	28763											
CCDC25	55246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	27605739	27605739	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	27605739	T	G	27605739	3	3	490	1	0	0	0	0	1	0	0	0	2802	1667	58	5	232	5	CCDC25	8	27605739	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08		27605739	118758283	29	28764											
ZFPM2	23414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	106815671	106815671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	106815671	T	C	106815671	3	2	490	1	0	0	0	0	1	0	0	0	17670	1812	63	3	3391	3	ZFPM2	8	106815671	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	79209932	106815671	39548351	30	28765											
FOXD4	2298	hgsc.bcm.edu	37	9	116848	116849	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	116849	-	A	116848	7	5	490	1	0	1	1	0	0	0	0	0	6006	1519	53	0	51	0	FOXD4	9	116848	Frame_Shift_Ins	INS	-	TCGA-CJ-4882-01A-02D-1429-08		116848	141096583	31	28766											
NMT2	9397	broad.mit.edu;hgsc.bcm.edu	37	10	15161511	15161511	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	15161511	A	T	15161511	3	4	490	1	0	0	0	0	1	0	0	0	10511	57	2	5	511	5	NMT2	10	15161511	Missense_Mutation	SNP	A	TCGA-CJ-4882-01A-02D-1429-08		15161511	120373236	32	28767											
ST8SIA6	338596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	17432566	17432566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	17432566	T	A	17432566	3	1	490	1	0	0	0	0	1	0	0	0	15248	1812	63	5	966	5	ST8SIA6	10	17432566	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	2271055	17432566	118102181	33	28768											
IFIT2	3433	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	91065757	91065757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	91065757	A	C	91065757	3	2	490	1	0	0	0	0	1	0	0	0	7530	130	5	5	50	5	IFIT2	10	91065757	Missense_Mutation	SNP	A	TCGA-CJ-4882-01A-02D-1429-08	73633191	91065757	44468990	34	28769											
WDR11	55717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	122661797	122661797	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	122661797	G	T	122661797	4	4	490	1	0	0	0	0	0	1	0	0	17285	943	33	4	2802	4	WDR11	10	122661797	Nonsense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	31596040	122661797	12872950	35	28770											
LRP4	4038	broad.mit.edu;hgsc.bcm.edu	37	11	46880582	46880582	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	46880582	G	A	46880582	2	1	490	1	0	0	0	0	0	0	0	1	8966	1368	48	2		2	LRP4	11	46880582	Silent	SNP	G	TCGA-CJ-4882-01A-02D-1429-08		46880582	88125934	36	28771											
OR4A16	81327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55111083	55111083	+	Missense_Mutation	SNP	G	G	T	rs143065334	byfrequency;alternate_allele	TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	55111083	G	T	55111083	3	4	490	1	0	0	0	0	1	0	0	0	11048	1058	37	4	409	4	OR4A16	11	55111083	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	8230501	55111083	79895433	37	28772											
SLC22A6	9356	broad.mit.edu	37	11	62751897	62751897	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	62751897	T	T	62751897	3	4	490	1	0	0	0	0	1	0	0	0	14471	1232	43	4	1465	4	SLC22A6	11	62751897	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	7640814	62751897	72254619	38	28773											
OTUB1	55611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63764641	63764641	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	63764641	C	A	63764641	2	1	490	1	0	0	0	0	0	0	0	1	11318	784	28	4		4	OTUB1	11	63764641	Silent	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	1012744	63764641	71241875	39	28774											
ADRBK1	156	broad.mit.edu	37	11	67034245	67034246	+	Frame_Shift_Del	DEL	CG	-	-	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	-	67034246	-	-	67034245	7	5	490	1	0	1	0	1	0	0	0	0	343	639	23	0	77	0	ADRBK1	11	67034245	Frame_Shift_Del	DEL	CG	TCGA-CJ-4882-01A-02D-1429-08	3269604	67034245	67972271	40	28775											
KDM4DL	0	broad.mit.edu	37	11	94759338	94759338	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	94759338	A	A	94759338	3	1	490	1	0	0	0	0	1	0	0	0	8139	623	22	4	619	4	KDM4DL	11	94759338	Missense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	27725093	94759338	40247178	41	28776											
MMP1	4312	broad.mit.edu;hgsc.bcm.edu	37	11	102668828	102668828	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	102668828	G	A	102668828	5	1	490	1	0	0	0	0	0	0	1	0	9655	1217	42	2		2	MMP1	11	102668828	Splice_Site	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	7909490	102668828	32337688	42	28777											
TAS2R50	259296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	11139225	11139225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	11139225	C	A	11139225	4	1	490	1	0	0	0	0	0	1	0	0	15596	922	32	4	668	4	TAS2R50	12	11139225	Nonsense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08		11139225	122712670	43	28778											
PPFIBP1	8496	broad.mit.edu	37	12	27799072	27799072	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	27799072	T	T	27799072	2	4	490	1	0	0	0	0	0	0	0	1	12320	871	31	1		1	PPFIBP1	12	27799072	Silent	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	16659847	27799072	106052823	44	28779											
EP400	57634	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	132497632	132497632	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	132497632	C	T	132497632	4	4	490	1	0	0	0	0	0	1	0	0	5151	528	19	1	3579	1	EP400	12	132497632	Nonsense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	104698560	132497632	1354263	45	28780											
GPR180	160897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	95257668	95257668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	95257668	A	G	95257668	3	3	490	1	0	0	0	0	1	0	0	0	6683	180	7	3	175	3	GPR180	13	95257668	Missense_Mutation	SNP	A	TCGA-CJ-4882-01A-02D-1429-08		95257668	19912210	46	28781											
RBM23	55147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23378782	23378782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	23378782	A	G	23378782	3	3	490	1	0	0	0	0	1	0	0	0	13136	43	2	3	1278	3	RBM23	14	23378782	Missense_Mutation	SNP	A	TCGA-CJ-4882-01A-02D-1429-08		23378782	83970758	47	28782											
RYR3	6263	broad.mit.edu;ucsc.edu	37	15	34072416	34072416	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	34072416	T	T	34072416	3	4	490	1	0	0	0	0	1	0	0	0	13783	536	19	1	9400	1	RYR3	15	34072416	Missense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08		34072416	68458976	48	28783											
CGNL1	84952	broad.mit.edu	37	15	57732654	57732654	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	57732654	G	G	57732654	3	3	490	1	0	0	0	0	1	0	0	0	3306	101	4	3	1688	3	CGNL1	15	57732654	Missense_Mutation	SNP	A	TCGA-CJ-4882-01A-02D-1429-08	23660238	57732654	44798738	49	28784											
ZZEF1	23140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3988990	3988990	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	3988990	G	C	3988990	3	2	490	1	0	0	0	0	1	0	0	0	18267	1124	39	4	6425	4	ZZEF1	17	3988990	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08		3988990	77206220	50	28785											
MYH13	8735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10247205	10247205	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	10247205	G	T	10247205	2	4	490	1	0	0	0	0	0	0	0	1	10039	1219	43	4		4	MYH13	17	10247205	Silent	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	6258215	10247205	70948005	51	28786											
PGAP3	93210	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37829071	37829071	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	37829071	C	T	37829071	2	4	490	1	0	0	0	0	0	0	0	1	11786	564	20	2		2	PGAP3	17	37829071	Silent	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	27581866	37829071	43366139	52	28787											
WNK4	65266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40947998	40947998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	40947998	A	T	40947998	3	4	490	1	0	0	0	0	1	0	0	0	17392	11	1	5	3440	5	WNK4	17	40947998	Missense_Mutation	SNP	A	TCGA-CJ-4882-01A-02D-1429-08	3118927	40947998	40247212	53	28788											
MYST2	0	broad.mit.edu	37	17	47899078	47899078	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	47899078	C	C	47899078	3	2	490	1	0	0	0	0	1	0	0	0	10110	1377	48	4	1354	4	MYST2	17	47899078	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	6951080	47899078	33296132	54	28789											
BRIP1	83990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	59853839	59853839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	59853839	C	A	59853839	3	1	490	1	0	0	0	0	1	0	0	0	1516	913	32	4	1757	4	BRIP1	17	59853839	Missense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	11954761	59853839	21341371	55	28790											
DCAF7	10238	broad.mit.edu	37	17	61628100	61628100	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	61628100	T	T	61628100	3	4	490	1	0	0	0	0	1	0	0	0	4277	768	27	1	64	1	DCAF7	17	61628100	Missense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	1774261	61628100	19567110	56	28791											
SOCS3	9021	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76354730	76354730	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	76354730	C	T	76354730	2	4	490	1	0	0	0	0	0	0	0	1	14928	796	28	2		2	SOCS3	17	76354730	Silent	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	14726630	76354730	4840480	57	28792											
FOXK2	3607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	80477948	80477948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	80477948	C	A	80477948	3	1	490	1	0	0	0	0	1	0	0	0	6022	711	25	4	186	4	FOXK2	17	80477948	Missense_Mutation	SNP	C	TCGA-CJ-4882-01A-02D-1429-08	4123218	80477948	717262	58	28793											
PCSK4	54760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1482902	1482902	+	Silent	SNP	G	G	A	rs143738061	byfrequency;alternate_allele	TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	1482902	G	A	1482902	2	1	490	1	0	0	0	0	0	0	0	1	11609	1281	45	2		2	PCSK4	19	1482902	Silent	SNP	G	TCGA-CJ-4882-01A-02D-1429-08		1482902	57646081	59	28794											
OR7G2	390882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9213720	9213720	+	Missense_Mutation	SNP	G	G	C	rs187723452	by1000genomes;alternate_allele	TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	9213720	G	C	9213720	3	2	490	1	0	0	0	0	1	0	0	0	11230	1174	41	4	776	4	OR7G2	19	9213720	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	7730818	9213720	49915263	60	28795											
DAND5	199699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	13080675	13080675	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	13080675	G	C	13080675	3	2	490	1	0	0	0	0	1	0	0	0	4232	933	33	4	203	4	DAND5	19	13080675	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	3866955	13080675	46048308	61	28796											
UPF1	5976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18974988	18974988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	C	18974988	T	C	18974988	3	2	490	1	0	0	0	0	1	0	0	0	17015	1609	56	3	2863	3	UPF1	19	18974988	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	5894313	18974988	40153995	62	28797											
PEPD	5184	broad.mit.edu	37	19	33882246	33882246	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	33882246	A	A	33882246	2	1	490	1	0	0	0	0	0	0	0	1	11735	1190	42	2		2	PEPD	19	33882246	Silent	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	14907258	33882246	25246737	63	28798											
GEMIN7	79760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45593483	45593483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	T	45593483	G	T	45593483	3	4	490	1	0	0	0	0	1	0	0	0	6340	991	35	4	113	4	GEMIN7	19	45593483	Missense_Mutation	SNP	G	TCGA-CJ-4882-01A-02D-1429-08	11711237	45593483	13535500	64	28799											
DGCR6L	85359	broad.mit.edu	37	22	20307319	20307319	+	Silent	SNP	A	G	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	20307319	G	G	20307319	2	3	490	1	0	0	0	0	0	0	0	1	4465	59	3	3		3	DGCR6L	22	20307319	Silent	SNP	A	TCGA-CJ-4882-01A-02D-1429-08		20307319	30997247	65	28800											
HPS4	89781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	26860453	26860453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	26860453	T	G	26860453	3	3	490	1	0	0	0	0	1	0	0	0	7348	1838	64	5	999	5	HPS4	22	26860453	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08	6553134	26860453	24444113	66	28801											
SUN2	25777	broad.mit.edu;hgsc.bcm.edu	37	22	39146323	39146323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	G	39146323	A	G	39146323	3	3	490	1	0	0	0	0	1	0	0	0	15404	420	15	3	1782	3	SUN2	22	39146323	Missense_Mutation	SNP	A	TCGA-CJ-4882-01A-02D-1429-08	12285870	39146323	12158243	67	28802											
LHFPL1	340596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	111914248	111914248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4882-01A-02D-1429-08	TCGA-CJ-4882-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1b7b8e8-cc87-4a52-900a-1f3ef7d449d7	d6c446c7-0ee8-434c-944f-e75d557ec181	A	111914248	T	A	111914248	3	1	490	1	0	0	0	0	1	0	0	0	8771	1580	55	5	303	5	LHFPL1	23	111914248	Missense_Mutation	SNP	T	TCGA-CJ-4882-01A-02D-1429-08		111914248	43356312	68	28803											
PLOD1	5351	hgsc.bcm.edu	37	1	12010478	12010478	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	12010478	C	T	12010478	4	4	491	1	0	0	0	0	0	1	0	0	12108	595	21	2	381	2	PLOD1	1	12010478	Nonsense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10		12010478	237240143	1	28804											
NBPF3	84224	hgsc.bcm.edu	37	1	21808126	21808126	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	21808126	G	A	21808126	2	1	491	1	0	0	0	0	0	0	0	1	10204	991	35	2		2	NBPF3	1	21808126	Silent	SNP	G	TCGA-CJ-4884-01A-01D-1373-10	9797648	21808126	227442495	2	28805											
COL11A1	1301	hgsc.bcm.edu	37	1	103548427	103548427	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	103548427	A	C	103548427	3	2	491	1	0	0	0	0	1	0	0	0	3669	304	11	5	5633	5	COL11A1	1	103548427	Missense_Mutation	SNP	A	TCGA-CJ-4884-01A-01D-1373-10	81740301	103548427	145702194	3	28806											
PAPPA2	60676	hgsc.bcm.edu;ucsc.edu	37	1	176740168	176740168	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	176740168	T	C	176740168	2	2	491	1	0	0	0	0	0	0	0	1	11440	1722	60	3		3	PAPPA2	1	176740168	Silent	SNP	T	TCGA-CJ-4884-01A-01D-1373-10	73191741	176740168	72510453	4	28807											
ABL2	27	hgsc.bcm.edu;ucsc.edu	37	1	179100500	179100500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	179100500	C	A	179100500	3	1	491	1	0	0	0	0	1	0	0	0	93	536	19	4	3296	4	ABL2	1	179100500	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	2360332	179100500	70150121	5	28808											
HMCN1	83872	ucsc.edu	37	1	186106949	186106949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	186106949	C	T	186106949	3	4	491	1	0	0	0	0	1	0	0	0	7227	893	31	1	14123	1	HMCN1	1	186106949	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	7006449	186106949	63143672	6	28809											
PARP1	142	hgsc.bcm.edu	37	1	226566974	226566974	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	226566974	T	A	226566974	2	1	491	1	0	0	0	0	0	0	0	1	11461	1681	58	5		5	PARP1	1	226566974	Silent	SNP	T	TCGA-CJ-4884-01A-01D-1373-10	40460025	226566974	22683647	7	28810											
ZP4	57829	hgsc.bcm.edu;ucsc.edu	37	1	238053425	238053425	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	238053425	C	G	238053425	3	3	491	1	0	0	0	0	1	0	0	0	18230	595	21	4	1439	4	ZP4	1	238053425	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	11486451	238053425	11197196	8	28811											
CNGA3	1261	hgsc.bcm.edu	37	2	99013536	99013536	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	99013536	T	A	99013536	3	1	491	1	0	0	0	0	1	0	0	0	3600	1667	58	5	1929	5	CNGA3	2	99013536	Missense_Mutation	SNP	T	TCGA-CJ-4884-01A-01D-1373-10		99013536	144185837	9	28812											
TTN	7273	hgsc.bcm.edu	37	2	179648841	179648841	+	Missense_Mutation	SNP	C	C	A	rs141961878	alternate_allele	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	179648841	C	A	179648841	3	1	491	1	0	0	0	0	1	0	0	0	16747	536	19	4	108645	4	TTN	2	179648841	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	80635305	179648841	63550532	10	28813											
BSN	8927	hgsc.bcm.edu;ucsc.edu	37	3	49694177	49694177	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	49694177	G	A	49694177	2	1	491	1	0	0	0	0	0	0	0	1	1532	1219	43	2		2	BSN	3	49694177	Silent	SNP	G	TCGA-CJ-4884-01A-01D-1373-10		49694177	148328253	11	28814											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52620646	52620646	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	52620646	G	T	52620646	4	4	491	1	0	0	0	0	0	1	0	0	11498	1294	45	4	1762	4	PBRM1	3	52620646	Nonsense_Mutation	SNP	G	TCGA-CJ-4884-01A-01D-1373-10	2926469	52620646	145401784	12	28815											
ATP13A4	84239	hgsc.bcm.edu;ucsc.edu	37	3	193151706	193151706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	193151706	C	T	193151706	3	4	491	1	0	0	0	0	1	0	0	0	1126	869	30	2	844	2	ATP13A4	3	193151706	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	140531060	193151706	4870724	13	28816											
ZNF732	654254	hgsc.bcm.edu	37	4	265967	265967	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	265967	C	G	265967	3	3	491	1	0	0	0	0	1	0	0	0	18135	922	32	4	1082	4	ZNF732	4	265967	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10		265967	190888309	14	28817											
AFP	174	hgsc.bcm.edu;ucsc.edu	37	4	74316336	74316336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	74316336	C	G	74316336	3	3	491	1	0	0	0	0	1	0	0	0	363	913	32	4	1336	4	AFP	4	74316336	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	74050369	74316336	116837940	15	28818											
RICTOR	253260	hgsc.bcm.edu;ucsc.edu	37	5	38958913	38958913	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	38958913	T	A	38958913	2	1	491	1	0	0	0	0	0	0	0	1	13371	1799	63	5		5	RICTOR	5	38958913	Silent	SNP	T	TCGA-CJ-4884-01A-01D-1373-10		38958913	141956347	16	28819											
SLC39A7	7922	hgsc.bcm.edu;ucsc.edu	37	6	33171434	33171434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	33171434	G	T	33171434	3	4	491	1	0	0	0	0	1	0	0	0	14636	1241	43	4	1280	4	SLC39A7	6	33171434	Missense_Mutation	SNP	G	TCGA-CJ-4884-01A-01D-1373-10		33171434	137943633	17	28820											
DNAH8	1769	hgsc.bcm.edu;ucsc.edu	37	6	38862582	38862582	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	38862582	T	A	38862582	3	1	491	1	0	0	0	0	1	0	0	0	4609	1783	62	5	8256	5	DNAH8	6	38862582	Missense_Mutation	SNP	T	TCGA-CJ-4884-01A-01D-1373-10	5691148	38862582	132252485	18	28821											
POLR1C	9533	hgsc.bcm.edu	37	6	43488991	43488991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	43488991	A	C	43488991	3	2	491	1	0	0	0	0	1	0	0	0	12218	247	9	5	1028	5	POLR1C	6	43488991	Missense_Mutation	SNP	A	TCGA-CJ-4884-01A-01D-1373-10	4626409	43488991	127626076	19	28822											
DST	667	hgsc.bcm.edu;ucsc.edu	37	6	56433296	56433296	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	G	C	G	G	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	56433296	G	C	56433296	3	2	491	1	0	0	0	0	1	0	0	0	4785	1000	35	4	9604	4	DST	6	56433296	Missense_Mutation	SNP	G	TCGA-CJ-4884-01A-01D-1373-10	12944305	56433296	114681771	20	28823											
GUSB	2990	hgsc.bcm.edu	37	7	65432870	65432870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	65432870	A	C	65432870	3	2	491	1	0	0	0	0	1	0	0	0	6909	11	1	5	466	5	GUSB	7	65432870	Missense_Mutation	SNP	A	TCGA-CJ-4884-01A-01D-1373-10		65432870	93705793	21	28824	358	2									
GUSB	2990	hgsc.bcm.edu	37	7	65432873	65432873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	65432873	A	G	65432873	3	3	491	1	0	0	0	0	1	0	0	0	6909	188	7	3	469	3	GUSB	7	65432873	Missense_Mutation	SNP	A	TCGA-CJ-4884-01A-01D-1373-10	3	65432873	93705790	22	28825	358	2									
SHC3	53358	hgsc.bcm.edu	37	9	91653009	91653009	+	Missense_Mutation	SNP	A	A	G	rs181529544	by1000genomes	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	91653009	A	G	91653009	3	3	491	1	0	0	0	0	1	0	0	0	14285	72	3	3	237	3	SHC3	9	91653009	Missense_Mutation	SNP	A	TCGA-CJ-4884-01A-01D-1373-10		91653009	49560422	23	28826											
SCAI	286205	hgsc.bcm.edu;ucsc.edu	37	9	127789090	127789090	+	Splice_Site	SNP	C	C	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	127789090	C	G	127789090	5	3	491	1	0	0	0	0	0	0	1	0	13882	521	18	4	1359	4	SCAI	9	127789090	Splice_Site	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	36136081	127789090	13424341	24	28827											
GBF1	8729	hgsc.bcm.edu	37	10	104136037	104136037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	104136037	T	C	104136037	3	2	491	1	0	0	0	0	1	0	0	0	6278	1667	58	3	4010	3	GBF1	10	104136037	Missense_Mutation	SNP	T	TCGA-CJ-4884-01A-01D-1373-10		104136037	31398710	25	28828											
SEC23IP	11196	hgsc.bcm.edu;ucsc.edu	37	10	121658082	121658082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	121658082	A	G	121658082	3	3	491	1	0	0	0	0	1	0	0	0	14006	43	2	3	313	3	SEC23IP	10	121658082	Missense_Mutation	SNP	A	TCGA-CJ-4884-01A-01D-1373-10	17522045	121658082	13876665	26	28829											
OR51B4	79339	hgsc.bcm.edu	37	11	5322392	5322392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	5322392	C	A	5322392	3	1	491	1	0	0	0	0	1	0	0	0	11097	623	22	4	150	4	OR51B4	11	5322392	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10		5322392	129684124	27	28830											
CCKBR	887	hgsc.bcm.edu	37	11	6292261	6292261	+	Missense_Mutation	SNP	C	C	G	rs144317623	alternate_allele	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	6292261	C	G	6292261	3	3	491	1	0	0	0	0	1	0	0	0	2883	768	27	4	850	4	CCKBR	11	6292261	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	969869	6292261	128714255	28	28831											
C12orf63	374467	hgsc.bcm.edu;ucsc.edu	37	12	97137566	97137566	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	97137566	C	T	97137566	2	4	491	1	0	0	0	0	0	0	0	1	1708	680	24	2		2	C12orf63	12	97137566	Silent	SNP	C	TCGA-CJ-4884-01A-01D-1373-10		97137566	36714329	29	28832											
C13orf39	0	hgsc.bcm.edu	37	13	103346806	103346806	+	Missense_Mutation	SNP	C	C	G	rs2390760	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	103346806	C	G	103346806	3	3	491	1	0	0	0	0	1	0	0	0	1734	623	22	4	767	4	C13orf39	13	103346806	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10		103346806	11823072	30	28833											
ZFYVE26	23503	hgsc.bcm.edu	37	14	68251807	68251807	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	68251807	T	C	68251807	2	2	491	1	0	0	0	0	0	0	0	1	17680	1567	55	3		3	ZFYVE26	14	68251807	Silent	SNP	T	TCGA-CJ-4884-01A-01D-1373-10		68251807	39097733	31	28834											
GOLGA5	9950	hgsc.bcm.edu	37	14	93282749	93282749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	93282749	C	A	93282749	3	1	491	1	0	0	0	0	1	0	0	0	6563	797	28	4	1496	4	GOLGA5	14	93282749	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	25030942	93282749	14066791	32	28835											
SERPINA11	256394	hgsc.bcm.edu;ucsc.edu	37	14	94909003	94909003	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	94909003	C	T	94909003	4	4	491	1	0	0	0	0	0	1	0	0	14101	624	22	2	63	2	SERPINA11	14	94909003	Nonsense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	1626254	94909003	12440537	33	28836											
CILP	8483	hgsc.bcm.edu	37	15	65490723	65490723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	65490723	G	T	65490723	3	4	491	1	0	0	0	0	1	0	0	0	3431	1377	48	4	1657	4	CILP	15	65490723	Missense_Mutation	SNP	G	TCGA-CJ-4884-01A-01D-1373-10		65490723	37040669	34	28837											
MRPL46	26589	hgsc.bcm.edu	37	15	89002955	89002955	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	89002955	A	G	89002955	2	3	491	1	0	0	0	0	0	0	0	1	9817	11	1	3		3	MRPL46	15	89002955	Silent	SNP	A	TCGA-CJ-4884-01A-01D-1373-10	23512232	89002955	13528437	35	28838											
NLRP1	22861	hgsc.bcm.edu	37	17	5456844	5456844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	5456844	C	G	5456844	3	3	491	1	0	0	0	0	1	0	0	0	10478	595	21	4	2158	4	NLRP1	17	5456844	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10		5456844	75738366	36	28839											
CNTROB	116840	hgsc.bcm.edu	37	17	7850944	7850944	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	7850944	A	C	7850944	2	2	491	1	0	0	0	0	0	0	0	1	3653	204	8	5		5	CNTROB	17	7850944	Silent	SNP	A	TCGA-CJ-4884-01A-01D-1373-10	2394100	7850944	73344266	37	28840											
ZNF624	57547	hgsc.bcm.edu;ucsc.edu	37	17	16527328	16527328	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	16527328	A	T	16527328	3	4	491	1	0	0	0	0	1	0	0	0	18060	304	11	5	1729	5	ZNF624	17	16527328	Missense_Mutation	SNP	A	TCGA-CJ-4884-01A-01D-1373-10	8676384	16527328	64667882	38	28841											
COG1	9382	hgsc.bcm.edu;ucsc.edu	37	17	71193163	71193163	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	71193163	G	C	71193163	3	2	491	1	0	0	0	0	1	0	0	0	3659	942	33	4	695	4	COG1	17	71193163	Missense_Mutation	SNP	G	TCGA-CJ-4884-01A-01D-1373-10	54665835	71193163	10002047	39	28842											
MC2R	4158	hgsc.bcm.edu	37	18	13884683	13884683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	13884683	G	C	13884683	3	2	491	1	0	0	0	0	1	0	0	0	9371	1115	39	4	62	4	MC2R	18	13884683	Missense_Mutation	SNP	G	TCGA-CJ-4884-01A-01D-1373-10		13884683	64192565	40	28843											
TIMM44	10469	hgsc.bcm.edu	37	19	7997586	7997586	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	7997586	G	T	7997586	2	4	491	1	0	0	0	0	0	0	0	1	15924	1115	39	4		4	TIMM44	19	7997586	Silent	SNP	G	TCGA-CJ-4884-01A-01D-1373-10		7997586	51131397	41	28844											
DLGAP4	22839	hgsc.bcm.edu	37	20	35060891	35060891	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	35060891	C	T	35060891	2	4	491	1	0	0	0	0	0	0	0	1	4564	581	21	2		2	DLGAP4	20	35060891	Silent	SNP	C	TCGA-CJ-4884-01A-01D-1373-10		35060891	27964629	42	28845											
GHRH	2691	hgsc.bcm.edu;ucsc.edu	37	20	35882647	35882647	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	35882647	C	G	35882647	3	3	491	1	0	0	0	0	1	0	0	0	6379	864	30	4	60	4	GHRH	20	35882647	Missense_Mutation	SNP	C	TCGA-CJ-4884-01A-01D-1373-10	821756	35882647	27142873	43	28846											
SLC19A1	6573	hgsc.bcm.edu	37	21	46935726	46935726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	T	46935726	G	T	46935726	3	4	491	1	0	0	0	0	1	0	0	0	14441	1377	48	4	157	4	SLC19A1	21	46935726	Missense_Mutation	SNP	G	TCGA-CJ-4884-01A-01D-1373-10		46935726	1194169	44	28847											
GAGE10	643832	hgsc.bcm.edu	37	X	49173718	49173718	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	G	49173718	C	G	49173718	2	3	491	1	0	0	0	0	0	0	0	1	6194	726	26	4		4	GAGE10	23	49173718	Silent	SNP	C	TCGA-CJ-4884-01A-01D-1373-10		49173718	106096842	45	28848											
AFF2	2334	hgsc.bcm.edu	37	X	148055112	148055112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	A	148055112	T	A	148055112	3	1	491	1	0	0	0	0	1	0	0	0	357	1638	57	5	3496	5	AFF2	23	148055112	Missense_Mutation	SNP	T	TCGA-CJ-4884-01A-01D-1373-10	98881394	148055112	7215448	46	28849											
GABRA3	2556	hgsc.bcm.edu;ucsc.edu	37	X	151376587	151376587	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	e6979ef0-43c4-4ae4-a5b3-f252105bdd6a	952be043-cb07-48b4-9c67-123679584a74	C	151376587	A	C	151376587	3	2	491	1	0	0	0	0	1	0	0	0	6169	246	9	5	830	5	GABRA3	23	151376587	Missense_Mutation	SNP	A	TCGA-CJ-4884-01A-01D-1373-10	3321475	151376587	3893973	47	28850											
VHL	7428	hgsc.bcm.edu	37	3	10183725	10183725	+	Nonsense_Mutation	SNP	C	C	A	rs5030826		TCGA-CJ-4884-01A-01W-1369-10	TCGA-CJ-4884-11A-01W-1369-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	64701b1f-b461-4def-9cab-f77ab43950e6	df5f0ae2-fd74-482a-b48e-40d0a838f438	A	10183725	C	A	10183725	4	1	492	1	0	0	0	0	0	1	0	0	17174	893	31	4	196	4	VHL	3	10183725	Nonsense_Mutation	SNP	C	TCGA-CJ-4884-01A-01W-1369-10		10183725	187838705	1	28851											
CATSPER4	378807	hgsc.bcm.edu	37	1	26527919	26527919	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	T	26527919	T	T	26527919	3	4	493	1	0	0	0	0	1	0	0	0	2692	536	19	1	1308	1	CATSPER4	1	26527919	Missense_Mutation	SNP	C	TCGA-CJ-4885-01A-01D-1373-10		26527919	222722702	1	28852											
NSUN4	387338	hgsc.bcm.edu;ucsc.edu	37	1	46827433	46827433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	46827433	C	G	46827433	3	3	493	1	0	0	0	0	1	0	0	0	10687	855	30	4	1092	4	NSUN4	1	46827433	Missense_Mutation	SNP	C	TCGA-CJ-4885-01A-01D-1373-10	20299514	46827433	202423188	2	28853											
SCP2	6342	hgsc.bcm.edu;ucsc.edu	37	1	53453708	53453708	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	53453708	T	G	53453708	2	3	493	1	0	0	0	0	0	0	0	1	13947	1683	59	5		5	SCP2	1	53453708	Silent	SNP	T	TCGA-CJ-4885-01A-01D-1373-10	6626275	53453708	195796913	3	28854											
FGGY	55277	hgsc.bcm.edu	37	1	60139711	60139711	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	C	60139711	G	C	60139711	3	2	493	1	0	0	0	0	1	0	0	0	5878	1217	42	4	1544	4	FGGY	1	60139711	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10	6686003	60139711	189110910	4	28855											
OLFM3	118427	hgsc.bcm.edu;ucsc.edu	37	1	102290660	102290660	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	102290660	C	G	102290660	3	3	493	1	0	0	0	0	1	0	0	0	10861	594	21	4	874	4	OLFM3	1	102290660	Missense_Mutation	SNP	C	TCGA-CJ-4885-01A-01D-1373-10	42150949	102290660	146959961	5	28856											
EPB41L5	57669	hgsc.bcm.edu;ucsc.edu	37	2	120776734	120776734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	120776734	A	G	120776734	3	3	493	1	0	0	0	0	1	0	0	0	5159	246	9	3	76	3	EPB41L5	2	120776734	Missense_Mutation	SNP	A	TCGA-CJ-4885-01A-01D-1373-10		120776734	122422639	6	28857											
ABCA12	26154	hgsc.bcm.edu;ucsc.edu	37	2	215831608	215831608	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	215831608	G	A	215831608	4	1	493	1	0	0	0	0	0	1	0	0	30	1095	38	1	1999	1	ABCA12	2	215831608	Nonsense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10	95054874	215831608	27367765	7	28858											
MST1R	4486	hgsc.bcm.edu;ucsc.edu	37	3	49927956	49927956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	C	49927956	T	C	49927956	3	2	493	1	0	0	0	0	1	0	0	0	9898	1551	54	3	442	3	MST1R	3	49927956	Missense_Mutation	SNP	T	TCGA-CJ-4885-01A-01D-1373-10		49927956	148094474	8	28859											
MFSD10	10227	hgsc.bcm.edu;ucsc.edu	37	4	2935293	2935293	+	Splice_Site	SNP	C	C	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	2935293	C	A	2935293	5	1	493	1	0	0	0	0	0	0	1	0	9535	521	18	4	1142	4	MFSD10	4	2935293	Splice_Site	SNP	C	TCGA-CJ-4885-01A-01D-1373-10		2935293	188218983	9	28860											
NIPBL	25836	hgsc.bcm.edu;ucsc.edu	37	5	36955611	36955611	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	36955611	T	A	36955611	2	1	493	1	0	0	0	0	0	0	0	1	10435	1509	53	5		5	NIPBL	5	36955611	Silent	SNP	T	TCGA-CJ-4885-01A-01D-1373-10		36955611	143959649	10	28861											
ARSI	340075	hgsc.bcm.edu;ucsc.edu	37	5	149677805	149677805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	149677805	G	A	149677805	3	1	493	1	0	0	0	0	1	0	0	0	994	1174	41	2	1031	2	ARSI	5	149677805	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10	112722194	149677805	31237455	11	28862											
LARP1	23367	hgsc.bcm.edu;ucsc.edu	37	5	154185452	154185452	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	154185452	C	A	154185452	4	1	493	1	0	0	0	0	0	1	0	0	8635	838	29	4	2385	4	LARP1	5	154185452	Nonsense_Mutation	SNP	C	TCGA-CJ-4885-01A-01D-1373-10	4507647	154185452	26729808	12	28863											
SLC22A16	85413	hgsc.bcm.edu;ucsc.edu	37	6	110757118	110757118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	110757118	G	A	110757118	3	1	493	1	0	0	0	0	1	0	0	0	14460	1203	42	2	387	2	SLC22A16	6	110757118	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10		110757118	60357949	13	28864											
MLXIPL	51085	hgsc.bcm.edu	37	7	73008676	73008676	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	73008676	T	G	73008676	3	3	493	1	0	0	0	0	1	0	0	0	9644	1609	56	5	198	5	MLXIPL	7	73008676	Missense_Mutation	SNP	T	TCGA-CJ-4885-01A-01D-1373-10		73008676	86129987	14	28865											
MCPH1	79648	hgsc.bcm.edu;ucsc.edu	37	8	6296490	6296502	+	Frame_Shift_Del	DEL	TCTCTTATTTGAA	TCTCTTATTTGAA	-	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	TCTCTTATTTGAA	TCTCTTATTTGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	-	6296502	TCTCTTATTTGAA	-	6296490	7	5	493	1	0	1	0	1	0	0	0	0	9405	1771	62	0	475	0	MCPH1	8	6296490	Frame_Shift_Del	DEL	TCTCTTATTTGAA	TCGA-CJ-4885-01A-01D-1373-10		6296490	140067532	15	28866											
ZBTB10	65986	hgsc.bcm.edu	37	8	81399912	81399913	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	-	81399913	AG	-	81399912	7	5	493	1	0	1	0	1	0	0	0	0	17535	175	7	0	869	0	ZBTB10	8	81399912	Frame_Shift_Del	DEL	AG	TCGA-CJ-4885-01A-01D-1373-10	75103422	81399912	64964110	16	28867											
NTRK2	4915	hgsc.bcm.edu;ucsc.edu	37	9	87635222	87635222	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	T	87635222	G	T	87635222	2	4	493	1	0	0	0	0	0	0	0	1	10714	1364	48	4		4	NTRK2	9	87635222	Silent	SNP	G	TCGA-CJ-4885-01A-01D-1373-10		87635222	53578209	17	28868											
ZNF462	58499	hgsc.bcm.edu	37	9	109688141	109688141	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	109688141	T	A	109688141	3	1	493	1	0	0	0	0	1	0	0	0	17938	1551	54	5	1954	5	ZNF462	9	109688141	Missense_Mutation	SNP	T	TCGA-CJ-4885-01A-01D-1373-10	22052919	109688141	31525290	18	28869											
CEP110	0	hgsc.bcm.edu	37	9	123935751	123935751	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	123935751	T	G	123935751	3	3	493	1	0	0	0	0	1	0	0	0	3247	1809	63	5	6802	5	CEP110	9	123935751	Missense_Mutation	SNP	T	TCGA-CJ-4885-01A-01D-1373-10	14247610	123935751	17277680	19	28870											
DNAJC12	56521	hgsc.bcm.edu;ucsc.edu	37	10	69583118	69583118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	69583118	T	A	69583118	3	1	493	1	0	0	0	0	1	0	0	0	4633	1548	54	5	528	5	DNAJC12	10	69583118	Missense_Mutation	SNP	T	TCGA-CJ-4885-01A-01D-1373-10		69583118	65951629	20	28871											
OR8K5	219453	hgsc.bcm.edu;ucsc.edu	37	11	55926954	55926954	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	55926954	T	A	55926954	3	1	493	1	0	0	0	0	1	0	0	0	11252	1519	53	5	86	5	OR8K5	11	55926954	Missense_Mutation	SNP	T	TCGA-CJ-4885-01A-01D-1373-10		55926954	79079562	21	28872											
OR10V1	390201	hgsc.bcm.edu	37	11	59481181	59481181	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	59481181	T	G	59481181	2	3	493	1	0	0	0	0	0	0	0	1	10927	1567	55	5		5	OR10V1	11	59481181	Silent	SNP	T	TCGA-CJ-4885-01A-01D-1373-10	3554227	59481181	75525335	22	28873											
ZBTB16	7704	hgsc.bcm.edu	37	11	114112972	114112972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	114112972	G	A	114112972	3	1	493	1	0	0	0	0	1	0	0	0	17538	1087	38	1	1551	1	ZBTB16	11	114112972	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10	54631791	114112972	20893544	23	28874											
RAB5B	5869	hgsc.bcm.edu	37	12	56385916	56385918	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	-	56385918	GGA	-	56385916	7	5	493	1	0	1	0	1	0	0	0	0	12962	1233	43	0	586	0	RAB5B	12	56385916	In_Frame_Del	DEL	GGA	TCGA-CJ-4885-01A-01D-1373-10		56385916	77465979	24	28875											
FOXN4	121643	hgsc.bcm.edu;ucsc.edu	37	12	109724492	109724492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	109724492	C	A	109724492	3	1	493	1	0	0	0	0	1	0	0	0	6029	912	32	4	915	4	FOXN4	12	109724492	Missense_Mutation	SNP	C	TCGA-CJ-4885-01A-01D-1373-10	53338576	109724492	24127403	25	28876											
FLT1	2321	hgsc.bcm.edu;ucsc.edu	37	13	28903788	28903788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	T	28903788	C	T	28903788	3	4	493	1	0	0	0	0	1	0	0	0	5948	536	19	1	1393	1	FLT1	13	28903788	Missense_Mutation	SNP	C	TCGA-CJ-4885-01A-01D-1373-10		28903788	86266090	26	28877											
KLF5	688	hgsc.bcm.edu	37	13	73636044	73636044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	73636044	G	A	73636044	3	1	493	1	0	0	0	0	1	0	0	0	8356	1029	36	2	313	2	KLF5	13	73636044	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10	44732256	73636044	41533834	27	28878											
CATSPER2	117155	hgsc.bcm.edu	37	15	43940130	43940130	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	43940130	T	A	43940130	3	1	493	1	0	0	0	0	1	0	0	0	2690	1406	49	5	1549	5	CATSPER2	15	43940130	Missense_Mutation	SNP	T	TCGA-CJ-4885-01A-01D-1373-10		43940130	58591262	28	28879											
DPP8	54878	hgsc.bcm.edu;ucsc.edu	37	15	65804777	65804777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	65804777	G	A	65804777	3	1	493	1	0	0	0	0	1	0	0	0	4734	1086	38	1	2609	1	DPP8	15	65804777	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10	21864647	65804777	36726615	29	28880											
ANPEP	290	hgsc.bcm.edu;ucsc.edu	37	15	90344775	90344775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	T	90344775	G	T	90344775	3	4	493	1	0	0	0	0	1	0	0	0	710	991	35	4	1314	4	ANPEP	15	90344775	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10	24539998	90344775	12186617	30	28881											
ZZEF1	23140	hgsc.bcm.edu;ucsc.edu	37	17	4020303	4020303	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	A	4020303	C	A	4020303	2	1	493	1	0	0	0	0	0	0	0	1	18267	813	29	4		4	ZZEF1	17	4020303	Silent	SNP	C	TCGA-CJ-4885-01A-01D-1373-10		4020303	77174907	31	28882											
C17orf75	64149	hgsc.bcm.edu;ucsc.edu	37	17	30658932	30658932	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	30658932	C	G	30658932	3	3	493	1	0	0	0	0	1	0	0	0	1882	477	17	4	153	4	C17orf75	17	30658932	Missense_Mutation	SNP	C	TCGA-CJ-4885-01A-01D-1373-10	26638629	30658932	50536278	32	28883											
NBR1	4077	hgsc.bcm.edu;ucsc.edu	37	17	41345367	41345367	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	41345367	C	G	41345367	2	3	493	1	0	0	0	0	0	0	0	1	10207	813	29	4		4	NBR1	17	41345367	Silent	SNP	C	TCGA-CJ-4885-01A-01D-1373-10	10686435	41345367	39849843	33	28884											
ASXL3	80816	hgsc.bcm.edu;ucsc.edu	37	18	31326427	31326427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	31326427	T	G	31326427	3	3	493	1	0	0	0	0	1	0	0	0	1068	1461	51	5	6661	5	ASXL3	18	31326427	Missense_Mutation	SNP	T	TCGA-CJ-4885-01A-01D-1373-10		31326427	46750821	34	28885											
MUM1	84939	hgsc.bcm.edu;ucsc.edu	37	19	1364542	1364542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	C	1364542	G	C	1364542	3	2	493	1	0	0	0	0	1	0	0	0	9992	1212	42	4	1273	4	MUM1	19	1364542	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10		1364542	57764441	35	28886											
PLCB4	5332	hgsc.bcm.edu	37	20	9459569	9459569	+	Missense_Mutation	SNP	C	C	T	rs145676690	bycluster;byfrequency;by1000genomes	TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	T	9459569	C	T	9459569	3	4	493	1	0	0	0	0	1	0	0	0	12037	782	27	1	3680	1	PLCB4	20	9459569	Missense_Mutation	SNP	C	TCGA-CJ-4885-01A-01D-1373-10		9459569	53565951	36	28887											
PITPNB	23760	hgsc.bcm.edu;ucsc.edu	37	22	28290544	28290544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	T	28290544	G	T	28290544	3	4	493	1	0	0	0	0	1	0	0	0	11955	1333	46	4	380	4	PITPNB	22	28290544	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01D-1373-10		28290544	23014022	37	28888											
FAM120C	54954	hgsc.bcm.edu;ucsc.edu	37	X	54142988	54142988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	T	54142988	A	T	54142988	3	4	493	1	0	0	0	0	1	0	0	0	5422	130	5	5	1016	5	FAM120C	23	54142988	Missense_Mutation	SNP	A	TCGA-CJ-4885-01A-01D-1373-10		54142988	101127572	38	28889											
TAF1	6872	hgsc.bcm.edu;ucsc.edu	37	X	70678095	70678095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4885-01A-01D-1373-10	TCGA-CJ-4885-11A-01D-1373-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	9a6d5856-8521-4ed9-929a-a5de385b2d24	f9c20338-b6c5-4d02-99fd-60c4afd07add	G	70678095	C	G	70678095	3	3	493	1	0	0	0	0	1	0	0	0	15525	681	24	4	5141	4	TAF1	23	70678095	Missense_Mutation	SNP	C	TCGA-CJ-4885-01A-01D-1373-10	16535107	70678095	84592465	39	28890											
VHL	7428	hgsc.bcm.edu	37	3	10183770	10183770	+	Missense_Mutation	SNP	G	G	T	rs5030805		TCGA-CJ-4885-01A-01W-1369-10	TCGA-CJ-4885-11A-01W-1369-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	ffde052b-5af0-4230-8637-930f54069756	6b355345-b783-4720-be0f-715c24dd99b4	T	10183770	G	T	10183770	3	4	494	1	0	0	0	0	1	0	0	0	17174	1029	36	4	241	4	VHL	3	10183770	Missense_Mutation	SNP	G	TCGA-CJ-4885-01A-01W-1369-10		10183770	187838660	1	28891											
PLEKHA6	22874	hgsc.bcm.edu;ucsc.edu	37	1	204218082	204218082	+	Missense_Mutation	SNP	G	G	T	rs148948923	alternate_allele	TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	T	204218082	G	T	204218082	3	4	495	1	0	0	0	0	1	0	0	0	12067	1203	42	4	1499	4	PLEKHA6	1	204218082	Missense_Mutation	SNP	G	TCGA-CJ-4886-01A-01D-1373-10		204218082	45032539	1	28892											
SRBD1	55133	hgsc.bcm.edu;ucsc.edu	37	2	45774690	45774690	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	G	45774690	C	G	45774690	3	3	495	1	0	0	0	0	1	0	0	0	15145	912	32	4	1286	4	SRBD1	2	45774690	Missense_Mutation	SNP	C	TCGA-CJ-4886-01A-01D-1373-10		45774690	197424683	2	28893											
FER1L5	90342	hgsc.bcm.edu;ucsc.edu	37	2	97335947	97335947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	97335947	C	A	97335947	3	1	495	1	0	0	0	0	1	0	0	0	5821	536	19	4	1505	4	FER1L5	2	97335947	Missense_Mutation	SNP	C	TCGA-CJ-4886-01A-01D-1373-10	51561257	97335947	145863426	3	28894											
CXCR7	57007	hgsc.bcm.edu	37	2	237489859	237489859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	T	237489859	C	T	237489859	3	4	495	1	0	0	0	0	1	0	0	0	4098	643	23	1	753	1	CXCR7	2	237489859	Missense_Mutation	SNP	C	TCGA-CJ-4886-01A-01D-1373-10	140153912	237489859	5709514	4	28895											
PIK3CA	5290	hgsc.bcm.edu;ucsc.edu	37	3	178952077	178952077	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	178952077	T	A	178952077	3	1	495	1	0	0	0	0	1	0	0	0	11920	1461	51	5	3210	5	PIK3CA	3	178952077	Missense_Mutation	SNP	T	TCGA-CJ-4886-01A-01D-1373-10		178952077	19070353	5	28896											
CCM2	83605	hgsc.bcm.edu	37	7	45113122	45113122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	45113122	C	A	45113122	3	1	495	1	0	0	0	0	1	0	0	0	2910	767	27	4	994	4	CCM2	7	45113122	Missense_Mutation	SNP	C	TCGA-CJ-4886-01A-01D-1373-10		45113122	114025541	6	28897											
TMEM71	137835	hgsc.bcm.edu	37	8	133740199	133740199	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	G	133740199	T	G	133740199	3	3	495	1	0	0	0	0	1	0	0	0	16212	1667	58	5	386	5	TMEM71	8	133740199	Missense_Mutation	SNP	T	TCGA-CJ-4886-01A-01D-1373-10		133740199	12623823	7	28898											
SCRIB	23513	hgsc.bcm.edu	37	8	144877654	144877654	+	Missense_Mutation	SNP	T	T	G	rs148494356	bycluster;byfrequency;by1000genomes	TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	G	144877654	T	G	144877654	3	3	495	1	0	0	0	0	1	0	0	0	13950	1696	59	5	1369	5	SCRIB	8	144877654	Missense_Mutation	SNP	T	TCGA-CJ-4886-01A-01D-1373-10	11137455	144877654	1486368	8	28899											
UBAP2	55833	hgsc.bcm.edu	37	9	33989092	33989092	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	T	33989092	C	T	33989092	2	4	495	1	0	0	0	0	0	0	0	1	16849	912	32	2		2	UBAP2	9	33989092	Silent	SNP	C	TCGA-CJ-4886-01A-01D-1373-10		33989092	107224339	9	28900											
ZNF462	58499	hgsc.bcm.edu	37	9	109687894	109687894	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	C	109687894	G	C	109687894	3	2	495	1	0	0	0	0	1	0	0	0	17938	962	34	4	1707	4	ZNF462	9	109687894	Missense_Mutation	SNP	G	TCGA-CJ-4886-01A-01D-1373-10	75698802	109687894	31525537	10	28901											
CDK5RAP2	55755	hgsc.bcm.edu	37	9	123169477	123169477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	C	123169477	G	C	123169477	3	2	495	1	0	0	0	0	1	0	0	0	3148	1368	48	4	933	4	CDK5RAP2	9	123169477	Missense_Mutation	SNP	G	TCGA-CJ-4886-01A-01D-1373-10	13481583	123169477	18043954	11	28902											
ALDH18A1	5832	hgsc.bcm.edu;ucsc.edu	37	10	97371065	97371065	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	97371065	G	A	97371065	2	1	495	1	0	0	0	0	0	0	0	1	489	1252	44	2		2	ALDH18A1	10	97371065	Silent	SNP	G	TCGA-CJ-4886-01A-01D-1373-10		97371065	38163682	12	28903											
STYK1	55359	hgsc.bcm.edu;ucsc.edu	37	12	10783683	10783683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	C	10783683	G	C	10783683	3	2	495	1	0	0	0	0	1	0	0	0	15371	1232	43	4	884	4	STYK1	12	10783683	Missense_Mutation	SNP	G	TCGA-CJ-4886-01A-01D-1373-10		10783683	123068212	13	28904											
EPB42	2038	hgsc.bcm.edu	37	15	43498732	43498732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	43498732	C	A	43498732	3	1	495	1	0	0	0	0	1	0	0	0	5160	710	25	4	677	4	EPB42	15	43498732	Missense_Mutation	SNP	C	TCGA-CJ-4886-01A-01D-1373-10		43498732	59032660	14	28905											
PPIP5K1	9677	hgsc.bcm.edu	37	15	43827396	43827396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	T	43827396	C	T	43827396	3	4	495	1	0	0	0	0	1	0	0	0	12342	864	30	2	527	2	PPIP5K1	15	43827396	Missense_Mutation	SNP	C	TCGA-CJ-4886-01A-01D-1373-10	328664	43827396	58703996	15	28906											
SALL1	6299	hgsc.bcm.edu;ucsc.edu	37	16	51172834	51172834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	51172834	C	A	51172834	3	1	495	1	0	0	0	0	1	0	0	0	13823	565	20	4	683	4	SALL1	16	51172834	Missense_Mutation	SNP	C	TCGA-CJ-4886-01A-01D-1373-10		51172834	39181919	16	28907											
SLC7A5	8140	hgsc.bcm.edu;ucsc.edu	37	16	87871508	87871508	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	87871508	G	A	87871508	2	1	495	1	0	0	0	0	0	0	0	1	14713	1335	47	2		2	SLC7A5	16	87871508	Silent	SNP	G	TCGA-CJ-4886-01A-01D-1373-10	36698674	87871508	2483245	17	28908											
CHD3	1107	hgsc.bcm.edu	37	17	7802423	7802423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	7802423	T	A	7802423	3	1	495	1	0	0	0	0	1	0	0	0	3328	1783	62	5	2581	5	CHD3	17	7802423	Missense_Mutation	SNP	T	TCGA-CJ-4886-01A-01D-1373-10		7802423	73392787	18	28909											
MED13	9969	hgsc.bcm.edu	37	17	60088124	60088124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	60088124	G	A	60088124	3	1	495	1	0	0	0	0	1	0	0	0	9437	942	33	2	4858	2	MED13	17	60088124	Missense_Mutation	SNP	G	TCGA-CJ-4886-01A-01D-1373-10	52285701	60088124	21107086	19	28910											
ZMAT5	55954	hgsc.bcm.edu	37	22	30134342	30134342	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	A	30134342	C	A	30134342	2	1	495	1	0	0	0	0	0	0	0	1	17707	726	26	4		4	ZMAT5	22	30134342	Silent	SNP	C	TCGA-CJ-4886-01A-01D-1373-10		30134342	21170224	20	28911											
RGAG1	57529	hgsc.bcm.edu;ucsc.edu	37	X	109696889	109696889	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	G	109696889	C	G	109696889	3	3	495	1	0	0	0	0	1	0	0	0	13287	739	26	4	3046	4	RGAG1	23	109696889	Missense_Mutation	SNP	C	TCGA-CJ-4886-01A-01D-1373-10		109696889	45573671	21	28912											
ATP2B3	492	hgsc.bcm.edu	37	X	152811579	152811579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4886-01A-01D-1373-10	TCGA-CJ-4886-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2c5bf34f-adf9-4e4e-9711-70af1341d542	93f0b87e-fd9d-420f-85e8-5f6bc21b8b17	G	152811579	A	G	152811579	3	3	495	1	0	0	0	0	1	0	0	0	1141	188	7	3	972	3	ATP2B3	23	152811579	Missense_Mutation	SNP	A	TCGA-CJ-4886-01A-01D-1373-10	43114690	152811579	2458981	22	28913											
PRKCZ	5590	hgsc.bcm.edu;ucsc.edu	37	1	2077494	2077494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	T	2077494	C	T	2077494	3	4	496	1	0	0	0	0	1	0	0	0	12527	594	21	2	607	2	PRKCZ	1	2077494	Missense_Mutation	SNP	C	TCGA-CJ-4887-01A-01D-1373-10		2077494	247173127	1	28914											
MTOR	2475	hgsc.bcm.edu;ucsc.edu	37	1	11182158	11182158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	11182158	A	C	11182158	3	2	496	1	0	0	0	0	1	0	0	0	9961	11	1	5	1005	5	MTOR	1	11182158	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10	9104664	11182158	238068463	2	28915											
PTGFRN	5738	hgsc.bcm.edu	37	1	117484595	117484595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	117484595	A	G	117484595	3	3	496	1	0	0	0	0	1	0	0	0	12761	304	11	3	314	3	PTGFRN	1	117484595	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10	106302437	117484595	131766026	3	28916											
NPR1	4881	hgsc.bcm.edu;ucsc.edu	37	1	153658648	153658648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	A	153658648	C	A	153658648	3	1	496	1	0	0	0	0	1	0	0	0	10601	478	17	4	1768	4	NPR1	1	153658648	Missense_Mutation	SNP	C	TCGA-CJ-4887-01A-01D-1373-10	36174053	153658648	95591973	4	28917											
TNR	7143	hgsc.bcm.edu;ucsc.edu	37	1	175293500	175293500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	T	175293500	G	T	175293500	3	4	496	1	0	0	0	0	1	0	0	0	16350	1319	46	4	135	4	TNR	1	175293500	Missense_Mutation	SNP	G	TCGA-CJ-4887-01A-01D-1373-10	21634852	175293500	73957121	5	28918											
CACNA1E	777	hgsc.bcm.edu	37	1	181453105	181453105	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	181453105	T	C	181453105	2	2	496	1	0	0	0	0	0	0	0	1	2544	1403	49	3		3	CACNA1E	1	181453105	Silent	SNP	T	TCGA-CJ-4887-01A-01D-1373-10	6159605	181453105	67797516	6	28919											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52620674	52620674	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	A	52620674	G	A	52620674	4	1	496	1	0	0	0	0	0	1	0	0	11498	1124	39	1	1790	1	PBRM1	3	52620674	Nonsense_Mutation	SNP	G	TCGA-CJ-4887-01A-01D-1373-10		52620674	145401756	7	28920											
APPL1	26060	hgsc.bcm.edu	37	3	57280133	57280133	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	A	57280133	C	A	57280133	4	1	496	1	0	0	0	0	0	1	0	0	817	489	17	4	534	4	APPL1	3	57280133	Nonsense_Mutation	SNP	C	TCGA-CJ-4887-01A-01D-1373-10	4659459	57280133	140742297	8	28921											
DNAH12	201625	hgsc.bcm.edu;ucsc.edu	37	3	57405106	57405106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	57405106	A	G	57405106	3	3	496	1	0	0	0	0	1	0	0	0	4602	101	4	3	3725	3	DNAH12	3	57405106	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10	124973	57405106	140617324	9	28922											
ARHGAP31	57514	hgsc.bcm.edu	37	3	119133103	119133103	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	119133103	A	C	119133103	3	2	496	1	0	0	0	0	1	0	0	0	880	101	4	5	2373	5	ARHGAP31	3	119133103	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10	61727997	119133103	78889327	10	28923											
PLOD2	5352	hgsc.bcm.edu;ucsc.edu	37	3	145804638	145804638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	145804638	T	C	145804638	3	2	496	1	0	0	0	0	1	0	0	0	12109	1821	63	3	1257	3	PLOD2	3	145804638	Missense_Mutation	SNP	T	TCGA-CJ-4887-01A-01D-1373-10	26671535	145804638	52217792	11	28924											
CC2D2A	57545	hgsc.bcm.edu;ucsc.edu	37	4	15538634	15538634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	15538634	T	C	15538634	3	2	496	1	0	0	0	0	1	0	0	0	2730	1638	57	3	1956	3	CC2D2A	4	15538634	Missense_Mutation	SNP	T	TCGA-CJ-4887-01A-01D-1373-10		15538634	175615642	12	28925											
CLRN2	645104	hgsc.bcm.edu;ucsc.edu	37	4	17524535	17524535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	17524535	T	C	17524535	3	2	496	1	0	0	0	0	1	0	0	0	3560	1493	52	3	308	3	CLRN2	4	17524535	Missense_Mutation	SNP	T	TCGA-CJ-4887-01A-01D-1373-10	1985901	17524535	173629741	13	28926											
LIMCH1	22998	hgsc.bcm.edu	37	4	41664844	41664844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	41664844	A	C	41664844	3	2	496	1	0	0	0	0	1	0	0	0	8804	188	7	5	2065	5	LIMCH1	4	41664844	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10	24140309	41664844	149489432	14	28927											
THAP9	79725	hgsc.bcm.edu	37	4	83838547	83838547	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	83838547	C	G	83838547	3	3	496	1	0	0	0	0	1	0	0	0	15863	477	17	4	1200	4	THAP9	4	83838547	Missense_Mutation	SNP	C	TCGA-CJ-4887-01A-01D-1373-10	42173703	83838547	107315729	15	28928											
CDH18	1016	hgsc.bcm.edu	37	5	19544098	19544098	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	19544098	T	G	19544098	3	3	496	1	0	0	0	0	1	0	0	0	3105	1812	63	5	1122	5	CDH18	5	19544098	Missense_Mutation	SNP	T	TCGA-CJ-4887-01A-01D-1373-10		19544098	161371162	16	28929											
PARP8	79668	hgsc.bcm.edu;ucsc.edu	37	5	50093052	50093052	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	50093052	T	G	50093052	3	3	496	1	0	0	0	0	1	0	0	0	11472	1461	51	5	1614	5	PARP8	5	50093052	Missense_Mutation	SNP	T	TCGA-CJ-4887-01A-01D-1373-10	30548954	50093052	130822208	17	28930											
CHSY3	337876	hgsc.bcm.edu	37	5	129520699	129520699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	A	129520699	C	A	129520699	3	1	496	1	0	0	0	0	1	0	0	0	3415	478	17	4	1874	4	CHSY3	5	129520699	Missense_Mutation	SNP	C	TCGA-CJ-4887-01A-01D-1373-10	79427647	129520699	51394561	18	28931											
DIAPH1	1729	hgsc.bcm.edu;ucsc.edu	37	5	140905613	140905613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	140905613	A	G	140905613	3	3	496	1	0	0	0	0	1	0	0	0	4520	217	8	3	264	3	DIAPH1	5	140905613	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10	11384914	140905613	40009647	19	28932											
HK3	3101	hgsc.bcm.edu	37	5	176308431	176308431	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	T	176308431	G	T	176308431	2	4	496	1	0	0	0	0	0	0	0	1	7199	1219	43	4		4	HK3	5	176308431	Silent	SNP	G	TCGA-CJ-4887-01A-01D-1373-10	35402818	176308431	4606829	20	28933											
DST	667	hgsc.bcm.edu;ucsc.edu	37	6	56495059	56495059	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	T	56495059	A	T	56495059	3	4	496	1	0	0	0	0	1	0	0	0	4785	420	15	5	17773	5	DST	6	56495059	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10		56495059	114620008	21	28934											
MRPL18	29074	hgsc.bcm.edu;ucsc.edu	37	6	160218373	160218373	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	160218373	T	C	160218373	2	2	496	1	0	0	0	0	0	0	0	1	9790	1461	51	3		3	MRPL18	6	160218373	Silent	SNP	T	TCGA-CJ-4887-01A-01D-1373-10	103723314	160218373	10896694	22	28935											
ASL	435	hgsc.bcm.edu	37	7	65554635	65554635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	65554635	A	G	65554635	3	3	496	1	0	0	0	0	1	0	0	0	1044	449	16	3	1065	3	ASL	7	65554635	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10		65554635	93584028	23	28936											
ATXN7L1	222255	hgsc.bcm.edu	37	7	105254438	105254438	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	T	105254438	C	T	105254438	2	4	496	1	0	0	0	0	0	0	0	1	1216	912	32	2		2	ATXN7L1	7	105254438	Silent	SNP	C	TCGA-CJ-4887-01A-01D-1373-10	39699803	105254438	53884225	24	28937											
C8orf86	389649	hgsc.bcm.edu	37	8	38386152	38386152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	38386152	T	C	38386152	3	2	496	1	0	0	0	0	1	0	0	0	2444	1559	54	3	679	3	C8orf86	8	38386152	Missense_Mutation	SNP	T	TCGA-CJ-4887-01A-01D-1373-10		38386152	107977870	25	28938											
PLAG1	5324	hgsc.bcm.edu	37	8	57079842	57079842	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	T	57079842	A	T	57079842	3	4	496	1	0	0	0	0	1	0	0	0	12025	217	8	5	1043	5	PLAG1	8	57079842	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10	18693690	57079842	89284180	26	28939											
PPFIA1	8500	hgsc.bcm.edu;ucsc.edu	37	11	70200406	70200406	+	Splice_Site	SNP	G	G	T	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	T	70200406	G	T	70200406	5	4	496	1	0	0	0	0	0	0	1	0	12316	1043	36	4	2225	4	PPFIA1	11	70200406	Splice_Site	SNP	G	TCGA-CJ-4887-01A-01D-1373-10		70200406	64806110	27	28940											
TULP3	7289	hgsc.bcm.edu	37	12	3029963	3029963	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	3029963	G	C	3029963	3	2	496	1	0	0	0	0	1	0	0	0	16787	1087	38	4	138	4	TULP3	12	3029963	Missense_Mutation	SNP	G	TCGA-CJ-4887-01A-01D-1373-10		3029963	130821932	28	28941											
POLR3B	55703	hgsc.bcm.edu	37	12	106895189	106895189	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	106895189	C	G	106895189	3	3	496	1	0	0	0	0	1	0	0	0	12236	643	23	4	3175	4	POLR3B	12	106895189	Missense_Mutation	SNP	C	TCGA-CJ-4887-01A-01D-1373-10	103865226	106895189	26956706	29	28942											
C13orf18	0	hgsc.bcm.edu;ucsc.edu	37	13	46918949	46918949	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	A	46918949	G	A	46918949	2	1	496	1	0	0	0	0	0	0	0	1	1722	958	34	2		2	C13orf18	13	46918949	Silent	SNP	G	TCGA-CJ-4887-01A-01D-1373-10		46918949	68250929	30	28943											
RPAP1	26015	hgsc.bcm.edu;ucsc.edu	37	15	41810335	41810335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	41810335	G	C	41810335	3	2	496	1	0	0	0	0	1	0	0	0	13554	991	35	4	352	4	RPAP1	15	41810335	Missense_Mutation	SNP	G	TCGA-CJ-4887-01A-01D-1373-10		41810335	60721057	31	28944											
TAF15	8148	hgsc.bcm.edu	37	17	34171885	34171885	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	A	34171885	C	A	34171885	2	1	496	1	0	0	0	0	0	0	0	1	15530	643	23	4		4	TAF15	17	34171885	Silent	SNP	C	TCGA-CJ-4887-01A-01D-1373-10		34171885	47023325	32	28945											
CDH19	28513	hgsc.bcm.edu;ucsc.edu	37	18	64172226	64172226	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	64172226	A	G	64172226	2	3	496	1	0	0	0	0	0	0	0	1	3106	59	3	3		3	CDH19	18	64172226	Silent	SNP	A	TCGA-CJ-4887-01A-01D-1373-10		64172226	13905022	33	28946											
C3	718	hgsc.bcm.edu;ucsc.edu	37	19	6702221	6702221	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	T	6702221	A	T	6702221	3	4	496	1	0	0	0	0	1	0	0	0	2206	333	12	5	2726	5	C3	19	6702221	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10		6702221	52426762	34	28947											
PRODH2	58510	hgsc.bcm.edu	37	19	36303154	36303154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	C	36303154	T	C	36303154	3	2	496	1	0	0	0	0	1	0	0	0	12559	1725	60	3	1022	3	PRODH2	19	36303154	Missense_Mutation	SNP	T	TCGA-CJ-4887-01A-01D-1373-10	29600933	36303154	22825829	35	28948											
ITPKC	80271	hgsc.bcm.edu	37	19	41223765	41223765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	A	41223765	C	A	41223765	3	1	496	1	0	0	0	0	1	0	0	0	7926	478	17	4	727	4	ITPKC	19	41223765	Missense_Mutation	SNP	C	TCGA-CJ-4887-01A-01D-1373-10	4920611	41223765	17905218	36	28949											
ETFB	2109	hgsc.bcm.edu	37	19	51850290	51850290	+	Missense_Mutation	SNP	G	G	A	rs1130426	bycluster;byfrequency;by1000genomes	TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	A	51850290	G	A	51850290	3	1	496	1	0	0	0	0	1	0	0	0	5272	1145	40	1	314	1	ETFB	19	51850290	Missense_Mutation	SNP	G	TCGA-CJ-4887-01A-01D-1373-10	10626525	51850290	7278693	37	28950											
COMMD7	149951	hgsc.bcm.edu;ucsc.edu	37	20	31291229	31291229	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	A	31291229	C	A	31291229	2	1	496	1	0	0	0	0	0	0	0	1	3723	697	25	4		4	COMMD7	20	31291229	Silent	SNP	C	TCGA-CJ-4887-01A-01D-1373-10		31291229	31734291	38	28951											
KIAA2022	340533	hgsc.bcm.edu;ucsc.edu	37	X	73962408	73962408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	T	73962408	C	T	73962408	3	4	496	1	0	0	0	0	1	0	0	0	8276	768	27	1	2574	1	KIAA2022	23	73962408	Missense_Mutation	SNP	C	TCGA-CJ-4887-01A-01D-1373-10		73962408	81308152	39	28952											
CXorf48	54967	hgsc.bcm.edu	37	X	134292203	134292203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4887-01A-01D-1373-10	TCGA-CJ-4887-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	612c63e4-c8ab-41a5-ba46-d35277407b12	0a088b77-d040-40f2-8471-74d732939d26	G	134292203	A	G	134292203	3	3	496	1	0	0	0	0	1	0	0	0	4113	43	2	3	352	3	CXorf48	23	134292203	Missense_Mutation	SNP	A	TCGA-CJ-4887-01A-01D-1373-10	60329795	134292203	20978357	40	28953											
C1orf86	199990	hgsc.bcm.edu	37	1	2121164	2121164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	G	2121164	T	G	2121164	3	3	497	1	0	0	0	0	1	0	0	0	2065	1783	62	5	259	5	C1orf86	1	2121164	Missense_Mutation	SNP	T	TCGA-CJ-4888-01A-01D-1373-10		2121164	247129457	1	28954											
SULT1C2	6819	hgsc.bcm.edu	37	2	108910186	108910186	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	T	108910186	G	T	108910186	2	4	497	1	0	0	0	0	0	0	0	1	15389	1306	46	4		4	SULT1C2	2	108910186	Silent	SNP	G	TCGA-CJ-4888-01A-01D-1373-10		108910186	134289187	2	28955											
OSGEPL1	64172	hgsc.bcm.edu	37	2	190618708	190618708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	G	190618708	T	G	190618708	3	3	497	1	0	0	0	0	1	0	0	0	11295	1838	64	5	363	5	OSGEPL1	2	190618708	Missense_Mutation	SNP	T	TCGA-CJ-4888-01A-01D-1373-10	81708522	190618708	52580665	3	28956											
ADAM23	8745	hgsc.bcm.edu	37	2	207424812	207424812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	T	207424812	A	T	207424812	3	4	497	1	0	0	0	0	1	0	0	0	245	72	3	5	1181	5	ADAM23	2	207424812	Missense_Mutation	SNP	A	TCGA-CJ-4888-01A-01D-1373-10	16806104	207424812	35774561	4	28957											
PBRM1	55193	ucsc.edu	37	3	52613194	52613194	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	A	52613194	C	A	52613194	4	1	497	1	0	0	0	0	0	1	0	0	11498	864	30	4	1531	4	PBRM1	3	52613194	Nonsense_Mutation	SNP	C	TCGA-CJ-4888-01A-01D-1373-10		52613194	145409236	5	28958											
TACC3	10460	hgsc.bcm.edu	37	4	1738986	1738986	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	A	1738986	G	A	1738986	2	1	497	1	0	0	0	0	0	0	0	1	15515	933	33	2		2	TACC3	4	1738986	Silent	SNP	G	TCGA-CJ-4888-01A-01D-1373-10		1738986	189415290	6	28959											
GPR78	27201	hgsc.bcm.edu	37	4	8582799	8582799	+	Silent	SNP	C	C	T	rs138084089	byfrequency	TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	T	8582799	C	T	8582799	2	4	497	1	0	0	0	0	0	0	0	1	6717	776	27	1		1	GPR78	4	8582799	Silent	SNP	C	TCGA-CJ-4888-01A-01D-1373-10	6843813	8582799	182571477	7	28960											
TRYX3	0	hgsc.bcm.edu	37	7	141952104	141952104	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	T	141952104	A	T	141952104	2	4	497	1	0	0	0	0	0	0	0	1	16616	117	5	5		5	TRYX3	7	141952104	Silent	SNP	A	TCGA-CJ-4888-01A-01D-1373-10		141952104	17186559	8	28961											
NOTCH1	4851	hgsc.bcm.edu	37	9	139391324	139391324	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	C	139391324	G	C	139391324	3	2	497	1	0	0	0	0	1	0	0	0	10554	1310	46	4	804	4	NOTCH1	9	139391324	Missense_Mutation	SNP	G	TCGA-CJ-4888-01A-01D-1373-10		139391324	1822107	9	28962											
SLC22A18	5002	hgsc.bcm.edu	37	11	2946407	2946407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	G	2946407	A	G	2946407	3	3	497	1	0	0	0	0	1	0	0	0	14462	295	11	3	1293	3	SLC22A18	11	2946407	Missense_Mutation	SNP	A	TCGA-CJ-4888-01A-01D-1373-10		2946407	132060109	10	28963											
F2	2147	hgsc.bcm.edu	37	11	46751085	46751085	+	Missense_Mutation	SNP	G	G	T	rs143064939	bycluster;byfrequency;by1000genomes	TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	T	46751085	G	T	46751085	3	4	497	1	0	0	0	0	1	0	0	0	5344	1087	38	4	1674	4	F2	11	46751085	Missense_Mutation	SNP	G	TCGA-CJ-4888-01A-01D-1373-10	43804678	46751085	88255431	11	28964											
TMEM132B	114795	hgsc.bcm.edu	37	12	126137053	126137053	+	Missense_Mutation	SNP	A	A	G	rs61940805		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	G	126137053	A	G	126137053	3	3	497	1	0	0	0	0	1	0	0	0	16058	159	6	3	1996	3	TMEM132B	12	126137053	Missense_Mutation	SNP	A	TCGA-CJ-4888-01A-01D-1373-10		126137053	7714842	12	28965											
APLP1	333	hgsc.bcm.edu	37	19	36370070	36370070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	G	36370070	T	G	36370070	3	3	497	1	0	0	0	0	1	0	0	0	778	1551	54	5	1870	5	APLP1	19	36370070	Missense_Mutation	SNP	T	TCGA-CJ-4888-01A-01D-1373-10		36370070	22758913	13	28966											
ODZ1	0	hgsc.bcm.edu	37	X	123554562	123554562	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4888-01A-01D-1373-10	TCGA-CJ-4888-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2775365d-ec36-4bf9-91bc-1f2d37115097	375eb186-4071-4975-aaf7-8543b63f4829	A	123554562	G	A	123554562	2	1	497	1	0	0	0	0	0	0	0	1	10841	1335	47	2		2	ODZ1	23	123554562	Silent	SNP	G	TCGA-CJ-4888-01A-01D-1373-10		123554562	31715998	14	28967											
PEAR1	375033	hgsc.bcm.edu	37	1	156878751	156878751	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	A	156878751	T	A	156878751	3	1	498	1	0	0	0	0	1	0	0	0	11719	1667	58	5	1372	5	PEAR1	1	156878751	Missense_Mutation	SNP	T	TCGA-CJ-4889-01A-01D-1373-10		156878751	92371870	1	28968											
C2orf78	388960	hgsc.bcm.edu	37	2	74042659	74042659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	C	74042659	T	C	74042659	3	2	498	1	0	0	0	0	1	0	0	0	2197	1667	58	3	1319	3	C2orf78	2	74042659	Missense_Mutation	SNP	T	TCGA-CJ-4889-01A-01D-1373-10		74042659	169156714	2	28969											
ZC3H15	55854	hgsc.bcm.edu	37	2	187367291	187367291	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	T	187367291	A	T	187367291	4	4	498	1	0	0	0	0	0	1	0	0	17579	15	1	5	529	5	ZC3H15	2	187367291	Nonsense_Mutation	SNP	A	TCGA-CJ-4889-01A-01D-1373-10	113324632	187367291	55832082	3	28970											
ADH1A	124	hgsc.bcm.edu	37	4	100205662	100205662	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	A	100205662	T	A	100205662	3	1	498	1	0	0	0	0	1	0	0	0	307	1435	50	5	686	5	ADH1A	4	100205662	Missense_Mutation	SNP	T	TCGA-CJ-4889-01A-01D-1373-10		100205662	90948614	4	28971											
TMEM161B	153396	hgsc.bcm.edu	37	5	87516401	87516401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	G	87516401	A	G	87516401	3	3	498	1	0	0	0	0	1	0	0	0	16089	420	15	3	1070	3	TMEM161B	5	87516401	Missense_Mutation	SNP	A	TCGA-CJ-4889-01A-01D-1373-10		87516401	93398859	5	28972											
TAF6	6878	hgsc.bcm.edu	37	7	99705041	99705041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	A	99705041	G	A	99705041	3	1	498	1	0	0	0	0	1	0	0	0	15542	1232	43	2	175	2	TAF6	7	99705041	Missense_Mutation	SNP	G	TCGA-CJ-4889-01A-01D-1373-10		99705041	59433622	6	28973											
TCEB1	6921	ucsc.edu	37	8	74858968	74858968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	T	T	T	G	T	T	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	G	74858968	T	G	74858968	3	3	498	1	0	0	0	0	1	0	0	0	15691	1638	57	5	106	5	TCEB1	8	74858968	Missense_Mutation	SNP	T	TCGA-CJ-4889-01A-01D-1373-10		74858968	71505054	7	28974											
ZC3H3	23144	hgsc.bcm.edu	37	8	144522389	144522389	+	Silent	SNP	G	G	A	rs137878905		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	A	144522389	G	A	144522389	2	1	498	1	0	0	0	0	0	0	0	1	17581	987	35	2		2	ZC3H3	8	144522389	Silent	SNP	G	TCGA-CJ-4889-01A-01D-1373-10	69663421	144522389	1841633	8	28975											
TNC	3371	hgsc.bcm.edu;ucsc.edu	37	9	117848578	117848578	+	Missense_Mutation	SNP	C	C	T	rs149285218	by1000genomes	TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	T	117848578	C	T	117848578	3	4	498	1	0	0	0	0	1	0	0	0	16282	652	23	1	5277	1	TNC	9	117848578	Missense_Mutation	SNP	C	TCGA-CJ-4889-01A-01D-1373-10		117848578	23364853	9	28976											
SLC25A25	114789	hgsc.bcm.edu	37	9	130863618	130863618	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	G	130863618	C	G	130863618	3	3	498	1	0	0	0	0	1	0	0	0	14501	855	30	4	815	4	SLC25A25	9	130863618	Missense_Mutation	SNP	C	TCGA-CJ-4889-01A-01D-1373-10	13015040	130863618	10349813	10	28977											
ABL1	25	hgsc.bcm.edu	37	9	133738356	133738356	+	Silent	SNP	G	G	A	rs121913458	alternate_allele	TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	A	133738356	G	A	133738356	2	1	498	1	0	0	0	0	0	0	0	1	92	1020	36	2		2	ABL1	9	133738356	Silent	SNP	G	TCGA-CJ-4889-01A-01D-1373-10	2874738	133738356	7475075	11	28978											
RRP12	23223	hgsc.bcm.edu	37	10	99132829	99132830	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	GC	99132830	-	GC	99132829	7	5	498	1	0	1	1	0	0	0	0	0	13699	1725	60	0	1806	0	RRP12	10	99132829	Frame_Shift_Ins	INS	-	TCGA-CJ-4889-01A-01D-1373-10		99132829	36401918	12	28979											
KIAA1377	57562	hgsc.bcm.edu	37	11	101833645	101833645	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	C	101833645	A	C	101833645	3	2	498	1	0	0	0	0	1	0	0	0	8234	217	8	5	1901	5	KIAA1377	11	101833645	Missense_Mutation	SNP	A	TCGA-CJ-4889-01A-01D-1373-10		101833645	33172871	13	28980											
FAM18A	0	hgsc.bcm.edu	37	16	10867214	10867214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	A	10867214	C	A	10867214	3	1	498	1	0	0	0	0	1	0	0	0	5522	478	17	4	244	4	FAM18A	16	10867214	Missense_Mutation	SNP	C	TCGA-CJ-4889-01A-01D-1373-10		10867214	79487539	14	28981											
MYH11	4629	hgsc.bcm.edu	37	16	15808800	15808800	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	G	15808800	C	G	15808800	3	3	498	1	0	0	0	0	1	0	0	0	10038	623	22	4	209	4	MYH11	16	15808800	Missense_Mutation	SNP	C	TCGA-CJ-4889-01A-01D-1373-10	4941586	15808800	74545953	15	28982											
OR3A1	4994	hgsc.bcm.edu	37	17	3195803	3195803	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	G	3195803	C	G	3195803	3	3	498	1	0	0	0	0	1	0	0	0	11044	623	22	4	877	4	OR3A1	17	3195803	Missense_Mutation	SNP	C	TCGA-CJ-4889-01A-01D-1373-10		3195803	77999407	16	28983											
KDM6B	23135	hgsc.bcm.edu	37	17	7753240	7753240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	C	7753240	T	C	7753240	3	2	498	1	0	0	0	0	1	0	0	0	8145	1551	54	3	3576	3	KDM6B	17	7753240	Missense_Mutation	SNP	T	TCGA-CJ-4889-01A-01D-1373-10	4557437	7753240	73441970	17	28984											
CEBPA	1050	hgsc.bcm.edu	37	19	33792412	33792412	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	T	33792412	G	T	33792412	2	4	498	1	0	0	0	0	0	0	0	1	3201	1335	47	4		4	CEBPA	19	33792412	Silent	SNP	G	TCGA-CJ-4889-01A-01D-1373-10		33792412	25336571	18	28985											
TRAPPC10	7109	hgsc.bcm.edu	37	21	45523389	45523390	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	T	45523390	-	T	45523389	7	5	498	1	0	1	1	0	0	0	0	0	16469	1145	40	0	3847	0	TRAPPC10	21	45523389	Frame_Shift_Ins	INS	-	TCGA-CJ-4889-01A-01D-1373-10		45523389	2606506	19	28986											
RGAG1	57529	hgsc.bcm.edu;ucsc.edu	37	X	109696417	109696417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	G	109696417	A	G	109696417	3	3	498	1	0	0	0	0	1	0	0	0	13287	333	12	3	2574	3	RGAG1	23	109696417	Missense_Mutation	SNP	A	TCGA-CJ-4889-01A-01D-1373-10		109696417	45574143	20	28987											
AVPR2	554	hgsc.bcm.edu	37	X	153170604	153170604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4889-01A-01D-1373-10	TCGA-CJ-4889-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	8d73b9b9-5bc3-4c68-9805-6f5895530ce9	038d964b-b66a-4e6f-8017-9d632d0cdb60	C	153170604	T	C	153170604	3	2	498	1	0	0	0	0	1	0	0	0	1233	1551	54	3	7	3	AVPR2	23	153170604	Missense_Mutation	SNP	T	TCGA-CJ-4889-01A-01D-1373-10	43474187	153170604	2099956	21	28988											
NBPF7	343505	hgsc.bcm.edu	37	1	120384017	120384017	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	T	120384017	A	T	120384017	3	4	499	1	0	0	0	0	1	0	0	0	10205	304	11	5	743	5	NBPF7	1	120384017	Missense_Mutation	SNP	A	TCGA-CJ-4890-01A-01D-1373-10		120384017	128866604	1	28989											
C1orf101	257044	hgsc.bcm.edu;ucsc.edu	37	1	244780931	244780931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	T	244780931	C	T	244780931	3	4	499	1	0	0	0	0	1	0	0	0	1978	623	22	2	2669	2	C1orf101	1	244780931	Missense_Mutation	SNP	C	TCGA-CJ-4890-01A-01D-1373-10	124396914	244780931	4469690	2	28990											
ATG4B	23192	hgsc.bcm.edu	37	2	242610738	242610738	+	Silent	SNP	T	T	C	rs11538896	bycluster;by1000genomes	TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	C	242610738	T	C	242610738	2	2	499	1	0	0	0	0	0	0	0	1	1097	1799	63	3		3	ATG4B	2	242610738	Silent	SNP	T	TCGA-CJ-4890-01A-01D-1373-10		242610738	588635	3	28991											
ISY1	57461	hgsc.bcm.edu;ucsc.edu	37	3	128864701	128864701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	T	128864701	A	T	128864701	3	4	499	1	0	0	0	0	1	0	0	0	7873	14	1	5	678	5	ISY1	3	128864701	Missense_Mutation	SNP	A	TCGA-CJ-4890-01A-01D-1373-10		128864701	69157729	4	28992											
BMP3	651	hgsc.bcm.edu	37	4	81967319	81967319	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	T	81967319	C	T	81967319	2	4	499	1	0	0	0	0	0	0	0	1	1461	581	21	2		2	BMP3	4	81967319	Silent	SNP	C	TCGA-CJ-4890-01A-01D-1373-10		81967319	109186957	5	28993											
HHIP	64399	hgsc.bcm.edu	37	4	145580833	145580833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	T	145580833	G	T	145580833	3	4	499	1	0	0	0	0	1	0	0	0	7099	1232	43	4	688	4	HHIP	4	145580833	Missense_Mutation	SNP	G	TCGA-CJ-4890-01A-01D-1373-10	63613514	145580833	45573443	6	28994											
THOC3	84321	hgsc.bcm.edu	37	5	175388335	175388335	+	Silent	SNP	T	T	C	rs11552883	bycluster;byfrequency	TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	C	175388335	T	C	175388335	2	2	499	1	0	0	0	0	0	0	0	1	15878	1567	55	3		3	THOC3	5	175388335	Silent	SNP	T	TCGA-CJ-4890-01A-01D-1373-10		175388335	5526925	7	28995											
COL9A1	1297	hgsc.bcm.edu	37	6	70942325	70942325	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	A	70942325	T	A	70942325	4	1	499	1	0	0	0	0	0	1	0	0	3709	1763	61	5	313	5	COL9A1	6	70942325	Nonsense_Mutation	SNP	T	TCGA-CJ-4890-01A-01D-1373-10		70942325	100172742	8	28996											
COL5A1	1289	hgsc.bcm.edu	37	9	137660274	137660274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	A	137660274	G	A	137660274	3	1	499	1	0	0	0	0	1	0	0	0	3698	1000	35	2	2349	2	COL5A1	9	137660274	Missense_Mutation	SNP	G	TCGA-CJ-4890-01A-01D-1373-10		137660274	3553157	9	28997											
QSER1	79832	hgsc.bcm.edu	37	11	32956639	32956639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	C	32956639	A	C	32956639	3	2	499	1	0	0	0	0	1	0	0	0	12895	449	16	5	3454	5	QSER1	11	32956639	Missense_Mutation	SNP	A	TCGA-CJ-4890-01A-01D-1373-10		32956639	102049877	10	28998											
DSCAML1	57453	hgsc.bcm.edu	37	11	117387317	117387317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	T	117387317	G	T	117387317	3	4	499	1	0	0	0	0	1	0	0	0	4771	1116	39	4	4617	4	DSCAML1	11	117387317	Missense_Mutation	SNP	G	TCGA-CJ-4890-01A-01D-1373-10	84430678	117387317	17619199	11	28999											
FOXN3	1112	hgsc.bcm.edu	37	14	89878773	89878773	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	C	89878773	A	C	89878773	3	2	499	1	0	0	0	0	1	0	0	0	6028	358	13	5	1448	5	FOXN3	14	89878773	Missense_Mutation	SNP	A	TCGA-CJ-4890-01A-01D-1373-10		89878773	17470767	12	29000											
CLMN	79789	hgsc.bcm.edu;ucsc.edu	37	14	95657993	95657993	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	A	95657993	G	A	95657993	4	1	499	1	0	0	0	0	0	1	0	0	3544	1357	47	2	95	2	CLMN	14	95657993	Nonsense_Mutation	SNP	G	TCGA-CJ-4890-01A-01D-1373-10	5779220	95657993	11691547	13	29001											
ZNF521	25925	hgsc.bcm.edu	37	18	22806401	22806401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	C	22806401	T	C	22806401	3	2	499	1	0	0	0	0	1	0	0	0	17977	1783	62	3	2474	3	ZNF521	18	22806401	Missense_Mutation	SNP	T	TCGA-CJ-4890-01A-01D-1373-10		22806401	55270847	14	29002											
TCF3	6929	hgsc.bcm.edu	37	19	1650219	1650219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	G	1650219	A	G	1650219	3	3	499	1	0	0	0	0	1	0	0	0	15706	159	6	3	2238	3	TCF3	19	1650219	Missense_Mutation	SNP	A	TCGA-CJ-4890-01A-01D-1373-10		1650219	57478764	15	29003											
MARCH2	51257	hgsc.bcm.edu	37	19	8486884	8486884	+	Missense_Mutation	SNP	G	G	A	rs1133893	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	A	8486884	G	A	8486884	3	1	499	1	0	0	0	0	1	0	0	0	9308	1319	46	2	162	2	MARCH2	19	8486884	Missense_Mutation	SNP	G	TCGA-CJ-4890-01A-01D-1373-10	6836665	8486884	50642099	16	29004											
NKG7	4818	hgsc.bcm.edu	37	19	51875304	51875304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	A	51875304	G	A	51875304	3	1	499	1	0	0	0	0	1	0	0	0	10450	1087	38	1	176	1	NKG7	19	51875304	Missense_Mutation	SNP	G	TCGA-CJ-4890-01A-01D-1373-10	43388420	51875304	7253679	17	29005											
EDN3	1908	hgsc.bcm.edu	37	20	57896170	57896170	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	G	57896170	C	G	57896170	3	3	499	1	0	0	0	0	1	0	0	0	4920	594	21	4	474	4	EDN3	20	57896170	Missense_Mutation	SNP	C	TCGA-CJ-4890-01A-01D-1373-10		57896170	5129350	18	29006											
EGFL6	25975	hgsc.bcm.edu	37	X	13618146	13618146	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4890-01A-01D-1373-10	TCGA-CJ-4890-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	2e4289bf-7d28-419b-9f31-9633a203bfd4	090c84e4-4034-4a08-81ea-d6650fe28373	C	13618146	T	C	13618146	2	2	499	1	0	0	0	0	0	0	0	1	4965	1403	49	3		3	EGFL6	23	13618146	Silent	SNP	T	TCGA-CJ-4890-01A-01D-1373-10		13618146	141652414	19	29007											
EIF2C1	26523	hgsc.bcm.edu	37	1	36358772	36358772	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	C	36358772	T	C	36358772	2	2	500	1	0	0	0	0	0	0	0	1	5007	1800	63	3		3	EIF2C1	1	36358772	Silent	SNP	T	TCGA-CJ-4891-01A-01D-1373-10		36358772	212891849	1	29008											
C1orf173	127254	hgsc.bcm.edu	37	1	75037489	75037489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	A	75037489	C	A	75037489	3	1	500	1	0	0	0	0	1	0	0	0	2016	710	25	4	691	4	C1orf173	1	75037489	Missense_Mutation	SNP	C	TCGA-CJ-4891-01A-01D-1373-10	38678717	75037489	174213132	2	29009											
TNR	7143	hgsc.bcm.edu	37	1	175334171	175334171	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	T	175334171	C	T	175334171	2	4	500	1	0	0	0	0	0	0	0	1	16350	796	28	2		2	TNR	1	175334171	Silent	SNP	C	TCGA-CJ-4891-01A-01D-1373-10	100296682	175334171	73916450	3	29010											
SETD2	29072	hgsc.bcm.edu;ucsc.edu	37	3	47142969	47142969	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	A	47142969	T	A	47142969	3	1	500	1	0	0	0	0	1	0	0	0	14144	1667	58	5	2756	5	SETD2	3	47142969	Missense_Mutation	SNP	T	TCGA-CJ-4891-01A-01D-1373-10		47142969	150879461	4	29011											
MFSD10	10227	hgsc.bcm.edu	37	4	2934201	2934201	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	G	2934201	C	G	2934201	2	3	500	1	0	0	0	0	0	0	0	1	9535	581	21	4		4	MFSD10	4	2934201	Silent	SNP	C	TCGA-CJ-4891-01A-01D-1373-10		2934201	188220075	5	29012											
SLC26A8	116369	hgsc.bcm.edu	37	6	35922962	35922962	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	A	35922962	G	A	35922962	2	1	500	1	0	0	0	0	0	0	0	1	14536	1140	40	1		1	SLC26A8	6	35922962	Silent	SNP	G	TCGA-CJ-4891-01A-01D-1373-10		35922962	135192105	6	29013											
PIK3CG	5294	hgsc.bcm.edu	37	7	106526717	106526717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	A	106526717	C	A	106526717	3	1	500	1	0	0	0	0	1	0	0	0	11923	623	22	4	3044	4	PIK3CG	7	106526717	Missense_Mutation	SNP	C	TCGA-CJ-4891-01A-01D-1373-10		106526717	52611946	7	29014											
TET1	80312	hgsc.bcm.edu	37	10	70450816	70450816	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	T	70450816	G	T	70450816	4	4	500	1	0	0	0	0	0	1	0	0	15781	1233	43	4	5698	4	TET1	10	70450816	Nonsense_Mutation	SNP	G	TCGA-CJ-4891-01A-01D-1373-10		70450816	65083931	8	29015											
TAF1C	9013	hgsc.bcm.edu	37	16	84213194	84213194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	T	84213194	C	T	84213194	3	4	500	1	0	0	0	0	1	0	0	0	15533	797	28	2	650	2	TAF1C	16	84213194	Missense_Mutation	SNP	C	TCGA-CJ-4891-01A-01D-1373-10		84213194	6141559	9	29016											
MFSD6L	162387	hgsc.bcm.edu	37	17	8701341	8701341	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	A	8701341	G	A	8701341	2	1	500	1	0	0	0	0	0	0	0	1	9543	1219	43	2		2	MFSD6L	17	8701341	Silent	SNP	G	TCGA-CJ-4891-01A-01D-1373-10		8701341	72493869	10	29017											
PTPRT	11122	hgsc.bcm.edu	37	20	40714466	40714466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	C	40714466	T	C	40714466	3	2	500	1	0	0	0	0	1	0	0	0	12825	1667	58	3	467	3	PTPRT	20	40714466	Missense_Mutation	SNP	T	TCGA-CJ-4891-01A-01D-1373-10		40714466	22311054	11	29018											
CHEK2	11200	hgsc.bcm.edu;ucsc.edu	37	22	29091808	29091808	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	A	29091808	G	A	29091808	2	1	500	1	0	0	0	0	0	0	0	1	3337	987	35	2		2	CHEK2	22	29091808	Silent	SNP	G	TCGA-CJ-4891-01A-01D-1373-10		29091808	22212758	12	29019											
MTMR8	55613	hgsc.bcm.edu	37	X	63548772	63548772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4891-01A-01D-1373-10	TCGA-CJ-4891-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	4176dd2a-f3b8-44bd-866f-cd5835080b2b	84b5374a-2e42-43e0-bed9-5d9a000398e2	C	63548772	T	C	63548772	3	2	500	1	0	0	0	0	1	0	0	0	9956	1551	54	3	765	3	MTMR8	23	63548772	Missense_Mutation	SNP	T	TCGA-CJ-4891-01A-01D-1373-10		63548772	91721788	13	29020											
ARID1A	8289	hgsc.bcm.edu	37	1	27099056	27099056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	27099056	G	A	27099056	3	1	501	1	0	0	0	0	1	0	0	0	913	1001	35	2	3522	2	ARID1A	1	27099056	Missense_Mutation	SNP	G	TCGA-CJ-4892-01A-01D-1373-10		27099056	222151565	1	29021											
SSX2IP	117178	hgsc.bcm.edu;ucsc.edu	37	1	85124037	85124037	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	85124037	T	A	85124037	3	1	501	1	0	0	0	0	1	0	0	0	15216	1493	52	5	826	5	SSX2IP	1	85124037	Missense_Mutation	SNP	T	TCGA-CJ-4892-01A-01D-1373-10	58024981	85124037	164126584	2	29022	359	2									
SSX2IP	117178	hgsc.bcm.edu	37	1	85124045	85124045	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	85124045	T	A	85124045	3	1	501	1	0	0	0	0	1	0	0	0	15216	1580	55	5	834	5	SSX2IP	1	85124045	Missense_Mutation	SNP	T	TCGA-CJ-4892-01A-01D-1373-10	8	85124045	164126576	3	29023	359	2									
PSRC1	84722	hgsc.bcm.edu	37	1	109824319	109824319	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	109824319	T	G	109824319	2	3	501	1	0	0	0	0	0	0	0	1	12729	1654	58	5		5	PSRC1	1	109824319	Silent	SNP	T	TCGA-CJ-4892-01A-01D-1373-10	24700274	109824319	139426302	4	29024											
C1orf103	0	hgsc.bcm.edu;ucsc.edu	37	1	111494207	111494207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	111494207	C	G	111494207	3	3	501	1	0	0	0	0	1	0	0	0	1979	796	28	4	1022	4	C1orf103	1	111494207	Missense_Mutation	SNP	C	TCGA-CJ-4892-01A-01D-1373-10	1669888	111494207	137756414	5	29025											
C1orf101	257044	hgsc.bcm.edu;ucsc.edu	37	1	244735876	244735876	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	244735876	A	G	244735876	2	3	501	1	0	0	0	0	0	0	0	1	1978	204	8	3		3	C1orf101	1	244735876	Silent	SNP	A	TCGA-CJ-4892-01A-01D-1373-10	133241669	244735876	4514745	6	29026											
PUM2	23369	hgsc.bcm.edu	37	2	20490431	20490431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	20490431	G	T	20490431	3	4	501	1	0	0	0	0	1	0	0	0	12839	942	33	4	1969	4	PUM2	2	20490431	Missense_Mutation	SNP	G	TCGA-CJ-4892-01A-01D-1373-10		20490431	222708942	7	29027											
SLC4A1AP	22950	hgsc.bcm.edu	37	2	27887264	27887264	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	27887264	C	T	27887264	2	4	501	1	0	0	0	0	0	0	0	1	14666	477	17	2		2	SLC4A1AP	2	27887264	Silent	SNP	C	TCGA-CJ-4892-01A-01D-1373-10	7396833	27887264	215312109	8	29028											
IGFBP2	3485	hgsc.bcm.edu	37	2	217525490	217525491	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	217525491	-	G	217525490	7	5	501	1	0	1	1	0	0	0	0	0	7586	1580	55	0	659	0	IGFBP2	2	217525490	Frame_Shift_Ins	INS	-	TCGA-CJ-4892-01A-01D-1373-10	189638226	217525490	25673883	9	29029											
DOCK3	1795	hgsc.bcm.edu;ucsc.edu	37	3	51395479	51395479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	C	51395479	T	C	51395479	3	2	501	1	0	0	0	0	1	0	0	0	4690	1725	60	3	5037	3	DOCK3	3	51395479	Missense_Mutation	SNP	T	TCGA-CJ-4892-01A-01D-1373-10		51395479	146626951	10	29030											
GOLGB1	2804	hgsc.bcm.edu;ucsc.edu	37	3	121413851	121413851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	121413851	A	G	121413851	3	3	501	1	0	0	0	0	1	0	0	0	6572	101	4	3	4315	3	GOLGB1	3	121413851	Missense_Mutation	SNP	A	TCGA-CJ-4892-01A-01D-1373-10	70018372	121413851	76608579	11	29031											
STAG1	10274	hgsc.bcm.edu;ucsc.edu	37	3	136076625	136076625	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	136076625	A	T	136076625	3	4	501	1	0	0	0	0	1	0	0	0	15254	188	7	5	802	5	STAG1	3	136076625	Missense_Mutation	SNP	A	TCGA-CJ-4892-01A-01D-1373-10	14662774	136076625	61945805	12	29032											
DHX36	170506	hgsc.bcm.edu	37	3	154033897	154033897	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	154033897	T	A	154033897	3	1	501	1	0	0	0	0	1	0	0	0	4511	1493	52	5	2823	5	DHX36	3	154033897	Missense_Mutation	SNP	T	TCGA-CJ-4892-01A-01D-1373-10	17957272	154033897	43988533	13	29033											
ANKRD56	0	hgsc.bcm.edu	37	4	77817972	77817972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	77817972	G	T	77817972	3	4	501	1	0	0	0	0	1	0	0	0	682	1174	41	4	1354	4	ANKRD56	4	77817972	Missense_Mutation	SNP	G	TCGA-CJ-4892-01A-01D-1373-10		77817972	113336304	14	29034											
RASGEF1B	153020	hgsc.bcm.edu;ucsc.edu	37	4	82369285	82369285	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	82369285	C	G	82369285	3	3	501	1	0	0	0	0	1	0	0	0	13083	855	30	4	869	4	RASGEF1B	4	82369285	Missense_Mutation	SNP	C	TCGA-CJ-4892-01A-01D-1373-10	4551313	82369285	108784991	15	29035											
ZFR	51663	hgsc.bcm.edu	37	5	32400303	32400303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	32400303	T	A	32400303	3	1	501	1	0	0	0	0	1	0	0	0	17671	1754	61	5	1750	5	ZFR	5	32400303	Missense_Mutation	SNP	T	TCGA-CJ-4892-01A-01D-1373-10		32400303	148514957	16	29036											
ZNF608	57507	hgsc.bcm.edu	37	5	124080148	124080148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	124080148	C	G	124080148	3	3	501	1	0	0	0	0	1	0	0	0	18046	768	27	4	4039	4	ZNF608	5	124080148	Missense_Mutation	SNP	C	TCGA-CJ-4892-01A-01D-1373-10	91679845	124080148	56835112	17	29037											
RAD50	10111	hgsc.bcm.edu;ucsc.edu	37	5	131940610	131940610	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	C	131940610	T	C	131940610	2	2	501	1	0	0	0	0	0	0	0	1	12997	1509	53	3		3	RAD50	5	131940610	Silent	SNP	T	TCGA-CJ-4892-01A-01D-1373-10	7860462	131940610	48974650	18	29038											
ADAMTS2	9509	hgsc.bcm.edu	37	5	178634637	178634637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	178634637	C	G	178634637	3	3	501	1	0	0	0	0	1	0	0	0	265	622	22	4	3018	4	ADAMTS2	5	178634637	Missense_Mutation	SNP	C	TCGA-CJ-4892-01A-01D-1373-10	46694027	178634637	2280623	19	29039											
HLA-DRB5	3127	hgsc.bcm.edu	37	6	32489822	32489822	+	Missense_Mutation	SNP	C	C	T	rs115417906	bycluster;byfrequency;by1000genomes	TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	32489822	C	T	32489822	3	4	501	1	0	0	0	0	1	0	0	0	7216	652	23	1	590	1	HLA-DRB5	6	32489822	Missense_Mutation	SNP	C	TCGA-CJ-4892-01A-01D-1373-10		32489822	138625245	20	29040											
MUC17	140453	hgsc.bcm.edu;ucsc.edu	37	7	100696682	100696682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	100696682	G	T	100696682	3	4	501	1	0	0	0	0	1	0	0	0	9981	1232	43	4	13370	4	MUC17	7	100696682	Missense_Mutation	SNP	G	TCGA-CJ-4892-01A-01D-1373-10		100696682	58441981	21	29041											
MMP16	4325	hgsc.bcm.edu	37	8	89081733	89081734	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	89081734	-	T	89081733	7	5	501	1	0	1	1	0	0	0	0	0	9662	333	12	0	751	0	MMP16	8	89081733	Frame_Shift_Ins	INS	-	TCGA-CJ-4892-01A-01D-1373-10		89081733	57282289	22	29042											
FAM91A1	157769	hgsc.bcm.edu;ucsc.edu	37	8	124820573	124820573	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	124820573	C	T	124820573	2	4	501	1	0	0	0	0	0	0	0	1	5658	813	29	2		2	FAM91A1	8	124820573	Silent	SNP	C	TCGA-CJ-4892-01A-01D-1373-10	35738840	124820573	21543449	23	29043											
FLJ43860	0	hgsc.bcm.edu	37	8	142500315	142500315	+	Missense_Mutation	SNP	G	G	A	rs180740682	by1000genomes	TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	142500315	G	A	142500315	3	1	501	1	0	0	0	0	1	0	0	0	5937	1059	37	1	3461	1	FLJ43860	8	142500315	Missense_Mutation	SNP	G	TCGA-CJ-4892-01A-01D-1373-10	17679742	142500315	3863707	24	29044											
PRSS3	5646	hgsc.bcm.edu	37	9	33797833	33797833	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	33797833	C	T	33797833	2	4	501	1	0	0	0	0	0	0	0	1	12632	845	30	2		2	PRSS3	9	33797833	Silent	SNP	C	TCGA-CJ-4892-01A-01D-1373-10		33797833	107415598	25	29045											
FAM78A	286336	hgsc.bcm.edu	37	9	134136486	134136486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	134136486	C	A	134136486	3	1	501	1	0	0	0	0	1	0	0	0	5633	595	21	4	280	4	FAM78A	9	134136486	Missense_Mutation	SNP	C	TCGA-CJ-4892-01A-01D-1373-10	100338653	134136486	7076945	26	29046											
C11orf54	28970	hgsc.bcm.edu;ucsc.edu	37	11	93483575	93483575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	93483575	A	G	93483575	3	3	501	1	0	0	0	0	1	0	0	0	1651	333	12	3	125	3	C11orf54	11	93483575	Missense_Mutation	SNP	A	TCGA-CJ-4892-01A-01D-1373-10		93483575	41522941	27	29047											
DNAJC14	85406	hgsc.bcm.edu;ucsc.edu	37	12	56217260	56217260	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	C	56217260	A	C	56217260	2	2	501	1	0	0	0	0	0	0	0	1	4635	175	7	5		5	DNAJC14	12	56217260	Silent	SNP	A	TCGA-CJ-4892-01A-01D-1373-10		56217260	77634635	28	29048											
SRRM4	84530	hgsc.bcm.edu	37	12	119583248	119583248	+	Silent	SNP	G	G	A	rs78239403	by1000genomes	TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	119583248	G	A	119583248	2	1	501	1	0	0	0	0	0	0	0	1	15183	1074	38	1		1	SRRM4	12	119583248	Silent	SNP	G	TCGA-CJ-4892-01A-01D-1373-10	63365988	119583248	14268647	29	29049											
POSTN	10631	hgsc.bcm.edu;ucsc.edu	37	13	38143504	38143504	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	38143504	G	T	38143504	2	4	501	1	0	0	0	0	0	0	0	1	12266	1335	47	4		4	POSTN	13	38143504	Silent	SNP	G	TCGA-CJ-4892-01A-01D-1373-10		38143504	77026374	30	29050											
ARHGEF7	8874	hgsc.bcm.edu;ucsc.edu	37	13	111944499	111944500	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	111944500	-	T	111944499	7	5	501	1	0	1	1	0	0	0	0	0	911	900	32	0	2310	0	ARHGEF7	13	111944499	Frame_Shift_Ins	INS	-	TCGA-CJ-4892-01A-01D-1373-10	73800995	111944499	3225379	31	29051											
CCDC64B	146439	hgsc.bcm.edu	37	16	3079294	3079294	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	3079294	T	A	3079294	3	1	501	1	0	0	0	0	1	0	0	0	2838	1609	56	5	448	5	CCDC64B	16	3079294	Missense_Mutation	SNP	T	TCGA-CJ-4892-01A-01D-1373-10		3079294	87275459	32	29052											
RBBP6	5930	hgsc.bcm.edu;ucsc.edu	37	16	24581249	24581249	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	24581249	A	T	24581249	4	4	501	1	0	0	0	0	0	1	0	0	13116	247	9	5	3358	5	RBBP6	16	24581249	Nonsense_Mutation	SNP	A	TCGA-CJ-4892-01A-01D-1373-10	21501955	24581249	65773504	33	29053											
CD300LB	124599	hgsc.bcm.edu	37	17	72522083	72522083	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	72522083	G	T	72522083	4	4	501	1	0	0	0	0	0	1	0	0	3001	1311	46	4	443	4	CD300LB	17	72522083	Nonsense_Mutation	SNP	G	TCGA-CJ-4892-01A-01D-1373-10		72522083	8673127	34	29054											
ATP8B1	5205	hgsc.bcm.edu;ucsc.edu	37	18	55321263	55321263	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	55321263	G	T	55321263	4	4	501	1	0	0	0	0	0	1	0	0	1194	1372	48	4	799	4	ATP8B1	18	55321263	Nonsense_Mutation	SNP	G	TCGA-CJ-4892-01A-01D-1373-10		55321263	22755985	35	29055											
ALPK2	115701	hgsc.bcm.edu	37	18	56184174	56184174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	C	56184174	T	C	56184174	3	2	501	1	0	0	0	0	1	0	0	0	545	1551	54	3	626	3	ALPK2	18	56184174	Missense_Mutation	SNP	T	TCGA-CJ-4892-01A-01D-1373-10	862911	56184174	21893074	36	29056											
MED16	10025	hgsc.bcm.edu	37	19	871987	871987	+	Silent	SNP	G	G	A	rs78047294	bycluster;byfrequency;by1000genomes	TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	871987	G	A	871987	2	1	501	1	0	0	0	0	0	0	0	1	9441	987	35	2		2	MED16	19	871987	Silent	SNP	G	TCGA-CJ-4892-01A-01D-1373-10		871987	58256996	37	29057											
ARMC6	93436	hgsc.bcm.edu	37	19	19165108	19165108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	19165108	T	A	19165108	3	1	501	1	0	0	0	0	1	0	0	0	955	1464	51	5	940	5	ARMC6	19	19165108	Missense_Mutation	SNP	T	TCGA-CJ-4892-01A-01D-1373-10	18293121	19165108	39963875	38	29058											
APLP1	333	hgsc.bcm.edu	37	19	36370102	36370102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	36370102	A	G	36370102	3	3	501	1	0	0	0	0	1	0	0	0	778	188	7	3	1902	3	APLP1	19	36370102	Missense_Mutation	SNP	A	TCGA-CJ-4892-01A-01D-1373-10	17204994	36370102	22758881	39	29059											
CLIP3	25999	hgsc.bcm.edu	37	19	36517553	36517553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	C	36517553	T	C	36517553	3	2	501	1	0	0	0	0	1	0	0	0	3536	1696	59	3	1186	3	CLIP3	19	36517553	Missense_Mutation	SNP	T	TCGA-CJ-4892-01A-01D-1373-10	147451	36517553	22611430	40	29060											
KIF16B	55614	hgsc.bcm.edu;ucsc.edu	37	20	16478322	16478322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	G	16478322	A	G	16478322	3	3	501	1	0	0	0	0	1	0	0	0	8285	115	4	3	2839	3	KIF16B	20	16478322	Missense_Mutation	SNP	A	TCGA-CJ-4892-01A-01D-1373-10		16478322	46547198	41	29061											
EDN3	1908	hgsc.bcm.edu;ucsc.edu	37	20	57897485	57897485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	57897485	A	T	57897485	3	4	501	1	0	0	0	0	1	0	0	0	4920	130	5	5	615	5	EDN3	20	57897485	Missense_Mutation	SNP	A	TCGA-CJ-4892-01A-01D-1373-10	41419163	57897485	5128035	42	29062											
HDAC6	10013	hgsc.bcm.edu	37	X	48681739	48681739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	A	48681739	G	A	48681739	3	1	501	1	0	0	0	0	1	0	0	0	7018	1203	42	2	3024	2	HDAC6	23	48681739	Missense_Mutation	SNP	G	TCGA-CJ-4892-01A-01D-1373-10		48681739	106588821	43	29063											
ITIH5L	0	hgsc.bcm.edu	37	X	54815020	54815020	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	C	54815020	A	C	54815020	3	2	501	1	0	0	0	0	1	0	0	0	7915	420	15	5	3298	5	ITIH5L	23	54815020	Missense_Mutation	SNP	A	TCGA-CJ-4892-01A-01D-1373-10	6133281	54815020	100455540	44	29064											
BCORL1	63035	hgsc.bcm.edu;ucsc.edu	37	X	129155093	129155093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4892-01A-01D-1373-10	TCGA-CJ-4892-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	5af7ce7b-91b7-460a-a534-d68898337883	1fb9033c-b267-4d24-bf41-5c368e519a6a	T	129155093	C	T	129155093	3	4	501	1	0	0	0	0	1	0	0	0	1387	913	32	2	3589	2	BCORL1	23	129155093	Missense_Mutation	SNP	C	TCGA-CJ-4892-01A-01D-1373-10	74340073	129155093	26115467	45	29065											
VHL	7428	hgsc.bcm.edu	37	3	10183709	10183712	+	Frame_Shift_Del	DEL	CGGC	CGGC	-	novel		TCGA-CJ-4892-01A-01W-1369-10	TCGA-CJ-4892-11A-01W-1370-10	CGGC	CGGC	CGGC	-	CGGC	CGGC	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	9b45e056-72cd-45f2-a3ef-71b57328c6c2	a69da0a6-4ec9-4e28-8a32-f366688bf9d3	-	10183712	CGGC	-	10183709	7	5	502	1	0	1	0	1	0	0	0	0	17174	759	27	0	180	0	VHL	3	10183709	Frame_Shift_Del	DEL	CGGC	TCGA-CJ-4892-01A-01W-1369-10		10183709	187838721	1	29066											
ALPL	249	hgsc.bcm.edu	37	1	21887655	21887655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	21887655	G	A	21887655	3	1	503	1	0	0	0	0	1	0	0	0	547	1175	41	2	257	2	ALPL	1	21887655	Missense_Mutation	SNP	G	TCGA-CJ-4893-01A-01D-1373-10		21887655	227362966	1	29067											
BAI2	576	hgsc.bcm.edu	37	1	32193184	32193184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	32193184	C	G	32193184	3	3	503	1	0	0	0	0	1	0	0	0	1299	768	27	4	166	4	BAI2	1	32193184	Missense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10	10305529	32193184	217057437	2	29068											
NBPF14	25832	hgsc.bcm.edu	37	1	148021592	148021592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	T	148021592	C	T	148021592	3	4	503	1	0	0	0	0	1	0	0	0	10201	855	30	2	2235	2	NBPF14	1	148021592	Missense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10	115828408	148021592	101229029	3	29069											
RAB10	10890	hgsc.bcm.edu;ucsc.edu	37	2	26332677	26332677	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	26332677	T	A	26332677	3	1	503	1	0	0	0	0	1	0	0	0	12903	1551	54	5	239	5	RAB10	2	26332677	Missense_Mutation	SNP	T	TCGA-CJ-4893-01A-01D-1373-10		26332677	216866696	4	29070											
BIRC6	57448	hgsc.bcm.edu	37	2	32692693	32692693	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	32692693	T	G	32692693	3	3	503	1	0	0	0	0	1	0	0	0	1438	1829	64	5	5563	5	BIRC6	2	32692693	Missense_Mutation	SNP	T	TCGA-CJ-4893-01A-01D-1373-10	6360016	32692693	210506680	5	29071											
RARB	5915	hgsc.bcm.edu;ucsc.edu	37	3	25470335	25470335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	25470335	G	A	25470335	3	1	503	1	0	0	0	0	1	0	0	0	13066	1029	36	2	115	2	RARB	3	25470335	Missense_Mutation	SNP	G	TCGA-CJ-4893-01A-01D-1373-10		25470335	172552095	6	29072											
ATR	545	hgsc.bcm.edu;ucsc.edu	37	3	142241591	142241591	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	T	142241591	A	T	142241591	3	4	503	1	0	0	0	0	1	0	0	0	1204	98	4	5	3789	5	ATR	3	142241591	Missense_Mutation	SNP	A	TCGA-CJ-4893-01A-01D-1373-10	116771256	142241591	55780839	7	29073											
MME	4311	hgsc.bcm.edu	37	3	154898167	154898167	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	154898167	G	A	154898167	2	1	503	1	0	0	0	0	0	0	0	1	9652	933	33	2		2	MME	3	154898167	Silent	SNP	G	TCGA-CJ-4893-01A-01D-1373-10	12656576	154898167	43124263	8	29074											
JAKMIP1	152789	hgsc.bcm.edu	37	4	6086641	6086641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	T	6086641	C	T	6086641	3	4	503	1	0	0	0	0	1	0	0	0	7947	835	29	2	1752	2	JAKMIP1	4	6086641	Missense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10		6086641	185067635	9	29075											
LIN54	132660	hgsc.bcm.edu;ucsc.edu	37	4	83849392	83849392	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	83849392	C	G	83849392	3	3	503	1	0	0	0	0	1	0	0	0	8816	739	26	4	140	4	LIN54	4	83849392	Missense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10	77762751	83849392	107304884	10	29076											
DCHS2	54798	hgsc.bcm.edu	37	4	155156936	155156936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	155156936	C	A	155156936	3	1	503	1	0	0	0	0	1	0	0	0	4290	826	29	4	1251	4	DCHS2	4	155156936	Missense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10	71307544	155156936	35997340	11	29077											
SLC9A3	6550	hgsc.bcm.edu;ucsc.edu	37	5	485324	485324	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	C	485324	G	C	485324	3	2	503	1	0	0	0	0	1	0	0	0	14726	942	33	4	1862	4	SLC9A3	5	485324	Missense_Mutation	SNP	G	TCGA-CJ-4893-01A-01D-1373-10		485324	180429936	12	29078											
DEPDC1B	55789	hgsc.bcm.edu	37	5	59895075	59895075	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	59895075	C	A	59895075	4	1	503	1	0	0	0	0	0	1	0	0	4442	690	24	4	342	4	DEPDC1B	5	59895075	Nonsense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10	59409751	59895075	121020185	13	29079											
MSH3	4437	hgsc.bcm.edu;ucsc.edu	37	5	80074600	80074600	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	T	80074600	C	T	80074600	4	4	503	1	0	0	0	0	0	1	0	0	9878	827	29	2	2446	2	MSH3	5	80074600	Nonsense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10	20179525	80074600	100840660	14	29080											
EIF4E1B	253314	hgsc.bcm.edu;ucsc.edu	37	5	176070710	176070710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	176070710	G	A	176070710	3	1	503	1	0	0	0	0	1	0	0	0	5031	1261	44	2	281	2	EIF4E1B	5	176070710	Missense_Mutation	SNP	G	TCGA-CJ-4893-01A-01D-1373-10	95996110	176070710	4844550	15	29081											
UIMC1	51720	hgsc.bcm.edu	37	5	176382976	176382976	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	C	176382976	T	C	176382976	2	2	503	1	0	0	0	0	0	0	0	1	16983	1838	64	3		3	UIMC1	5	176382976	Silent	SNP	T	TCGA-CJ-4893-01A-01D-1373-10	312266	176382976	4532284	16	29082											
PAPOLB	56903	hgsc.bcm.edu	37	7	4901302	4901302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	4901302	A	G	4901302	3	3	503	1	0	0	0	0	1	0	0	0	11437	304	11	3	1777	3	PAPOLB	7	4901302	Missense_Mutation	SNP	A	TCGA-CJ-4893-01A-01D-1373-10		4901302	154237361	17	29083											
ZCWPW1	55063	hgsc.bcm.edu	37	7	100004924	100004924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	100004924	C	A	100004924	3	1	503	1	0	0	0	0	1	0	0	0	17609	595	21	4	986	4	ZCWPW1	7	100004924	Missense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10	95103622	100004924	59133739	18	29084											
AGK	55750	hgsc.bcm.edu	37	7	141341644	141341644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	141341644	A	G	141341644	3	3	503	1	0	0	0	0	1	0	0	0	383	14	1	3	957	3	AGK	7	141341644	Missense_Mutation	SNP	A	TCGA-CJ-4893-01A-01D-1373-10	41336720	141341644	17797019	19	29085											
NRG1	3084	hgsc.bcm.edu;ucsc.edu	37	8	32505779	32505779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	32505779	T	A	32505779	3	1	503	1	0	0	0	0	1	0	0	0	10654	1838	64	5	1818	5	NRG1	8	32505779	Missense_Mutation	SNP	T	TCGA-CJ-4893-01A-01D-1373-10		32505779	113858243	20	29086											
VPS13A	23230	hgsc.bcm.edu;ucsc.edu	37	9	79910543	79910543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	C	79910543	A	C	79910543	3	2	503	1	0	0	0	0	1	0	0	0	17201	14	1	5	3723	5	VPS13A	9	79910543	Missense_Mutation	SNP	A	TCGA-CJ-4893-01A-01D-1373-10		79910543	61302888	21	29087											
OR13A1	79290	hgsc.bcm.edu	37	10	45799761	45799761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	C	45799761	T	C	45799761	3	2	503	1	0	0	0	0	1	0	0	0	10940	1551	54	3	880	3	OR13A1	10	45799761	Missense_Mutation	SNP	T	TCGA-CJ-4893-01A-01D-1373-10		45799761	89734986	22	29088											
LRRC27	80313	hgsc.bcm.edu	37	10	134161545	134161545	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	134161545	T	G	134161545	3	3	503	1	0	0	0	0	1	0	0	0	8988	1821	63	5	629	5	LRRC27	10	134161545	Missense_Mutation	SNP	T	TCGA-CJ-4893-01A-01D-1373-10	88361784	134161545	1373202	23	29089											
PLEKHA7	144100	hgsc.bcm.edu;ucsc.edu	37	11	16816509	16816509	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	T	16816509	C	T	16816509	2	4	503	1	0	0	0	0	0	0	0	1	12068	813	29	2		2	PLEKHA7	11	16816509	Silent	SNP	C	TCGA-CJ-4893-01A-01D-1373-10		16816509	118190007	24	29090											
ARHGEF17	9828	hgsc.bcm.edu	37	11	73021006	73021007	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	-	73021007	CA	-	73021006	7	5	503	1	0	1	0	1	0	0	0	0	900	697	25	0	1325	0	ARHGEF17	11	73021006	Frame_Shift_Del	DEL	CA	TCGA-CJ-4893-01A-01D-1373-10	56204497	73021006	61985510	25	29091											
FZD4	8322	hgsc.bcm.edu	37	11	86662332	86662332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	86662332	A	G	86662332	3	3	503	1	0	0	0	0	1	0	0	0	6139	333	12	3	151	3	FZD4	11	86662332	Missense_Mutation	SNP	A	TCGA-CJ-4893-01A-01D-1373-10	13641326	86662332	48344184	26	29092											
GRIN2B	2904	hgsc.bcm.edu	37	12	13716545	13716545	+	Silent	SNP	C	C	G	rs149089581	alternate_allele	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	13716545	C	G	13716545	2	3	503	1	0	0	0	0	0	0	0	1	6787	494	18	4		4	GRIN2B	12	13716545	Silent	SNP	C	TCGA-CJ-4893-01A-01D-1373-10		13716545	120135350	27	29093											
DCT	1638	hgsc.bcm.edu	37	13	95121259	95121259	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	95121259	G	A	95121259	2	1	503	1	0	0	0	0	0	0	0	1	4306	958	34	2		2	DCT	13	95121259	Silent	SNP	G	TCGA-CJ-4893-01A-01D-1373-10		95121259	20048619	28	29094											
C13orf27	0	hgsc.bcm.edu	37	13	103418816	103418816	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	103418816	C	A	103418816	4	1	503	1	0	0	0	0	0	1	0	0	1725	922	32	4	68	4	C13orf27	13	103418816	Nonsense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10	8297557	103418816	11751062	29	29095											
ITGAM	3684	hgsc.bcm.edu;ucsc.edu	37	16	31336054	31336054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	31336054	A	G	31336054	3	3	503	1	0	0	0	0	1	0	0	0	7894	43	2	3	2313	3	ITGAM	16	31336054	Missense_Mutation	SNP	A	TCGA-CJ-4893-01A-01D-1373-10		31336054	59018699	30	29096											
HOXB1	3211	hgsc.bcm.edu	37	17	46608181	46608181	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	C	46608181	G	C	46608181	3	2	503	1	0	0	0	0	1	0	0	0	7306	1261	44	4	827	4	HOXB1	17	46608181	Missense_Mutation	SNP	G	TCGA-CJ-4893-01A-01D-1373-10		46608181	34587029	31	29097											
GGA3	23163	hgsc.bcm.edu	37	17	73235514	73235514	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	73235514	C	G	73235514	2	3	503	1	0	0	0	0	0	0	0	1	6361	871	31	4		4	GGA3	17	73235514	Silent	SNP	C	TCGA-CJ-4893-01A-01D-1373-10	26627333	73235514	7959696	32	29098											
SLC26A11	284129	hgsc.bcm.edu	37	17	78221983	78221983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	G	78221983	A	G	78221983	3	3	503	1	0	0	0	0	1	0	0	0	14529	188	7	3	1395	3	SLC26A11	17	78221983	Missense_Mutation	SNP	A	TCGA-CJ-4893-01A-01D-1373-10	4986469	78221983	2973227	33	29099											
SEH1L	81929	hgsc.bcm.edu	37	18	12963339	12963339	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	C	12963339	A	C	12963339	3	2	503	1	0	0	0	0	1	0	0	0	14022	72	3	5	504	5	SEH1L	18	12963339	Missense_Mutation	SNP	A	TCGA-CJ-4893-01A-01D-1373-10		12963339	65113909	34	29100											
RALGAPB	57148	hgsc.bcm.edu;ucsc.edu	37	20	37150282	37150282	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	A	37150282	G	A	37150282	2	1	503	1	0	0	0	0	0	0	0	1	13028	1364	48	2		2	RALGAPB	20	37150282	Silent	SNP	G	TCGA-CJ-4893-01A-01D-1373-10		37150282	25875238	35	29101											
RUNX1	861	hgsc.bcm.edu	37	21	36259170	36259170	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	T	36259170	G	T	36259170	2	4	503	1	0	0	0	0	0	0	0	1	13759	958	34	4		4	RUNX1	21	36259170	Silent	SNP	G	TCGA-CJ-4893-01A-01D-1373-10		36259170	11870725	36	29102											
CACNA1I	8911	hgsc.bcm.edu;ucsc.edu	37	22	40078528	40078528	+	Missense_Mutation	SNP	C	C	T	rs185177048	by1000genomes	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	9403d19b-9af5-478e-8ff2-1b2a9008fd13	41bb10ac-c625-417e-b123-16925beb07b3	T	40078528	C	T	40078528	3	4	503	1	0	0	0	0	1	0	0	0	2548	768	27	1	5830	1	CACNA1I	22	40078528	Missense_Mutation	SNP	C	TCGA-CJ-4893-01A-01D-1373-10		40078528	11226038	37	29103											
HNRNPR	10236	hgsc.bcm.edu;ucsc.edu	37	1	23640079	23640079	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	23640079	A	T	23640079	3	4	504	1	0	0	0	0	1	0	0	0	7279	127	5	5	779	5	HNRNPR	1	23640079	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10		23640079	225610542	1	29104											
C1orf85	112770	hgsc.bcm.edu	37	1	156264685	156264685	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	156264685	T	G	156264685	2	3	504	1	0	0	0	0	0	0	0	1	2064	1741	61	5		5	C1orf85	1	156264685	Silent	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	132624606	156264685	92985936	2	29105											
SEC16B	89866	hgsc.bcm.edu	37	1	177927420	177927420	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	177927420	A	C	177927420	2	2	504	1	0	0	0	0	0	0	0	1	14000	175	7	5		5	SEC16B	1	177927420	Silent	SNP	A	TCGA-CJ-4894-01A-01D-1373-10	21662735	177927420	71323201	3	29106											
OR6F1	343169	hgsc.bcm.edu	37	1	247875706	247875706	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	247875706	T	A	247875706	3	1	504	1	0	0	0	0	1	0	0	0	11208	1464	51	5	578	5	OR6F1	1	247875706	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	69948286	247875706	1374915	4	29107											
TPO	7173	hgsc.bcm.edu	37	2	1488398	1488398	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	1488398	A	T	1488398	3	4	504	1	0	0	0	0	1	0	0	0	16422	333	12	5	1399	5	TPO	2	1488398	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10		1488398	241710975	5	29108											
PRKCE	5581	hgsc.bcm.edu;ucsc.edu	37	2	46211702	46211702	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	46211702	C	A	46211702	2	1	504	1	0	0	0	0	0	0	0	1	12521	759	27	4		4	PRKCE	2	46211702	Silent	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	44723304	46211702	196987671	6	29109											
MPHOSPH10	10199	hgsc.bcm.edu;ucsc.edu	37	2	71360308	71360308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	71360308	G	T	71360308	3	4	504	1	0	0	0	0	1	0	0	0	9732	1203	42	4	376	4	MPHOSPH10	2	71360308	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	25148606	71360308	171839065	7	29110											
RNF149	284996	hgsc.bcm.edu;ucsc.edu	37	2	101898370	101898370	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	101898370	C	T	101898370	2	4	504	1	0	0	0	0	0	0	0	1	13463	564	20	2		2	RNF149	2	101898370	Silent	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	30538062	101898370	141301003	8	29111											
IL1R1	3554	hgsc.bcm.edu;ucsc.edu	37	2	102792950	102792950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	102792950	G	A	102792950	3	1	504	1	0	0	0	0	1	0	0	0	7665	1174	41	2	1479	2	IL1R1	2	102792950	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	894580	102792950	140406423	9	29112											
ACOXL	55289	hgsc.bcm.edu;ucsc.edu	37	2	111753532	111753532	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	111753532	T	A	111753532	3	1	504	1	0	0	0	0	1	0	0	0	161	1841	64	5	1282	5	ACOXL	2	111753532	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	8960582	111753532	131445841	10	29113											
NR4A2	4929	hgsc.bcm.edu	37	2	157185033	157185033	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	157185033	T	G	157185033	3	3	504	1	0	0	0	0	1	0	0	0	10640	1850	64	5	939	5	NR4A2	2	157185033	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	45431501	157185033	86014340	11	29114											
SESTD1	91404	hgsc.bcm.edu	37	2	179997085	179997085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	179997085	A	C	179997085	3	2	504	1	0	0	0	0	1	0	0	0	14140	358	13	5	1208	5	SESTD1	2	179997085	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10	22812052	179997085	63202288	12	29115											
PDE1A	5136	hgsc.bcm.edu;ucsc.edu	37	2	183050723	183050723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	183050723	G	T	183050723	3	4	504	1	0	0	0	0	1	0	0	0	11640	1174	41	4	233	4	PDE1A	2	183050723	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	3053638	183050723	60148650	13	29116											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191507	10191507	+	Missense_Mutation	SNP	G	G	A	rs5030821	bycluster	TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	10191507	G	A	10191507	3	1	504	1	0	0	0	0	1	0	0	0	17174	1116	39	1	510	1	VHL	3	10191507	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10		10191507	187830923	14	29117											
RABL3	285282	hgsc.bcm.edu	37	3	120428688	120428688	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	120428688	G	A	120428688	2	1	504	1	0	0	0	0	0	0	0	1	12985	958	34	2		2	RABL3	3	120428688	Silent	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	110237181	120428688	77593742	15	29118											
HPS3	84343	hgsc.bcm.edu;ucsc.edu	37	3	148858222	148858222	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	148858222	A	T	148858222	3	4	504	1	0	0	0	0	1	0	0	0	7347	14	1	5	655	5	HPS3	3	148858222	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10	28429534	148858222	49164208	16	29119											
TET2	54790	hgsc.bcm.edu	37	4	106190890	106190890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	106190890	A	C	106190890	3	2	504	1	0	0	0	0	1	0	0	0	15782	246	9	5	4283	5	TET2	4	106190890	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10		106190890	84963386	17	29120											
PDGFC	56034	hgsc.bcm.edu	37	4	157892006	157892006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	157892006	C	T	157892006	3	4	504	1	0	0	0	0	1	0	0	0	11666	913	32	2	1011	2	PDGFC	4	157892006	Missense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	51701116	157892006	33262270	18	29121											
ERBB2IP	55914	hgsc.bcm.edu;ucsc.edu	37	5	65350608	65350608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	65350608	G	C	65350608	3	2	504	1	0	0	0	0	1	0	0	0	5209	933	33	4	3536	4	ERBB2IP	5	65350608	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10		65350608	115564652	19	29122											
CENPH	64946	hgsc.bcm.edu;ucsc.edu	37	5	68504122	68504122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	68504122	A	G	68504122	3	3	504	1	0	0	0	0	1	0	0	0	3234	72	3	3	617	3	CENPH	5	68504122	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10	3153514	68504122	112411138	20	29123											
FOXD1	2297	hgsc.bcm.edu	37	5	72743761	72743761	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	72743761	T	A	72743761	4	1	504	1	0	0	0	0	0	1	0	0	6003	1821	63	5	972	5	FOXD1	5	72743761	Nonsense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	4239639	72743761	108171499	21	29124											
GLRA1	2741	hgsc.bcm.edu	37	5	151208500	151208500	+	Silent	SNP	C	C	T	rs75463357	bycluster;byfrequency;by1000genomes	TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	151208500	C	T	151208500	2	4	504	1	0	0	0	0	0	0	0	1	6461	854	30	2		2	GLRA1	5	151208500	Silent	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	78464739	151208500	29706760	22	29125											
FAM135A	57579	hgsc.bcm.edu	37	6	71185160	71185160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	71185160	A	G	71185160	3	3	504	1	0	0	0	0	1	0	0	0	5452	202	7	3	215	3	FAM135A	6	71185160	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10		71185160	99929907	23	29126											
KIAA1919	91749	hgsc.bcm.edu;ucsc.edu	37	6	111587971	111587971	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	111587971	T	A	111587971	2	1	504	1	0	0	0	0	0	0	0	1	8269	1567	55	5		5	KIAA1919	6	111587971	Silent	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	40402811	111587971	59527096	24	29127											
PTPRK	5796	hgsc.bcm.edu;ucsc.edu	37	6	128643199	128643199	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	128643199	C	T	128643199	4	4	504	1	0	0	0	0	0	1	0	0	12818	740	26	2	3976	2	PTPRK	6	128643199	Nonsense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	17055228	128643199	42471868	25	29128											
CARD11	84433	hgsc.bcm.edu	37	7	2949758	2949758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	2949758	T	A	2949758	3	1	504	1	0	0	0	0	1	0	0	0	2647	1548	54	5	286	5	CARD11	7	2949758	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10		2949758	156188905	26	29129											
SDK1	221935	hgsc.bcm.edu;ucsc.edu	37	7	4218135	4218135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	4218135	G	A	4218135	3	1	504	1	0	0	0	0	1	0	0	0	13981	1087	38	1	5153	1	SDK1	7	4218135	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	1268377	4218135	154920528	27	29130											
ZNF680	340252	hgsc.bcm.edu;ucsc.edu	37	7	63982483	63982483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	63982483	T	C	63982483	3	2	504	1	0	0	0	0	1	0	0	0	18099	1821	63	3	947	3	ZNF680	7	63982483	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	59764348	63982483	95156180	28	29131											
SLC26A4	5172	hgsc.bcm.edu;ucsc.edu	37	7	107335133	107335133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	107335133	G	A	107335133	3	1	504	1	0	0	0	0	1	0	0	0	14532	1145	40	1	1451	1	SLC26A4	7	107335133	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	43352650	107335133	51803530	29	29132											
CBLL1	79872	hgsc.bcm.edu	37	7	107393904	107393904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	107393904	A	G	107393904	3	3	504	1	0	0	0	0	1	0	0	0	2705	304	11	3	240	3	CBLL1	7	107393904	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10	58771	107393904	51744759	30	29133											
ZNF596	169270	hgsc.bcm.edu;ucsc.edu	37	8	195379	195380	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	195380	-	A	195379	7	5	504	1	0	1	1	0	0	0	0	0	18038	595	21	0	550	0	ZNF596	8	195379	Frame_Shift_Ins	INS	-	TCGA-CJ-4894-01A-01D-1373-10		195379	146168643	31	29134											
SGCZ	137868	hgsc.bcm.edu	37	8	13959919	13959919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	13959919	C	T	13959919	3	4	504	1	0	0	0	0	1	0	0	0	14217	681	24	2	236	2	SGCZ	8	13959919	Missense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	13764540	13959919	132404103	32	29135											
PKHD1L1	93035	hgsc.bcm.edu;ucsc.edu	37	8	110456096	110456096	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	110456096	G	T	110456096	4	4	504	1	0	0	0	0	0	1	0	0	11979	1349	47	4	4902	4	PKHD1L1	8	110456096	Nonsense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	96496177	110456096	35907926	33	29136											
FNBP1	23048	hgsc.bcm.edu;ucsc.edu	37	9	132757177	132757177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	132757177	T	C	132757177	3	2	504	1	0	0	0	0	1	0	0	0	5972	1406	49	3	1832	3	FNBP1	9	132757177	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10		132757177	8456254	34	29137											
BTAF1	9044	hgsc.bcm.edu;ucsc.edu	37	10	93699745	93699745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	93699745	C	T	93699745	3	4	504	1	0	0	0	0	1	0	0	0	1538	643	23	1	185	1	BTAF1	10	93699745	Missense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10		93699745	41835002	35	29138											
MRVI1	10335	hgsc.bcm.edu	37	11	10673639	10673639	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	10673639	A	T	10673639	3	4	504	1	0	0	0	0	1	0	0	0	9860	217	8	5	2660	5	MRVI1	11	10673639	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10		10673639	124332877	36	29139											
COPB1	1315	hgsc.bcm.edu;ucsc.edu	37	11	14487933	14487933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	14487933	C	T	14487933	3	4	504	1	0	0	0	0	1	0	0	0	3730	922	32	2	700	2	COPB1	11	14487933	Missense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	3814294	14487933	120518583	37	29140	360	2									
COPB1	1315	hgsc.bcm.edu;ucsc.edu	37	11	14487935	14487935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	14487935	G	T	14487935	3	4	504	1	0	0	0	0	1	0	0	0	3730	1319	46	4	702	4	COPB1	11	14487935	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	2	14487935	120518581	38	29141	360	2									
PLEKHB1	58473	hgsc.bcm.edu	37	11	73362890	73362890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	73362890	A	C	73362890	3	2	504	1	0	0	0	0	1	0	0	0	12071	246	9	5	319	5	PLEKHB1	11	73362890	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10	58874955	73362890	61643626	39	29142											
SYTL2	54843	hgsc.bcm.edu;ucsc.edu	37	11	85438961	85438961	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	85438961	G	T	85438961	2	4	504	1	0	0	0	0	0	0	0	1	15495	1306	46	4		4	SYTL2	11	85438961	Silent	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	12076071	85438961	49567555	40	29143											
TAF1D	79101	hgsc.bcm.edu	37	11	93470348	93470348	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	93470348	G	C	93470348	3	2	504	1	0	0	0	0	1	0	0	0	15534	991	35	4	331	4	TAF1D	11	93470348	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	8031387	93470348	41536168	41	29144											
MLF2	8079	hgsc.bcm.edu;ucsc.edu	37	12	6859057	6859057	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	6859057	C	T	6859057	2	4	504	1	0	0	0	0	0	0	0	1	9623	639	23	1		1	MLF2	12	6859057	Silent	SNP	C	TCGA-CJ-4894-01A-01D-1373-10		6859057	126992838	42	29145											
TM7SF3	51768	hgsc.bcm.edu;ucsc.edu	37	12	27152583	27152583	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	27152583	T	A	27152583	2	1	504	1	0	0	0	0	0	0	0	1	15987	1567	55	5		5	TM7SF3	12	27152583	Silent	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	20293526	27152583	106699312	43	29146											
HOXC10	3226	hgsc.bcm.edu;ucsc.edu	37	12	54383107	54383107	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	54383107	C	T	54383107	2	4	504	1	0	0	0	0	0	0	0	1	7316	709	25	2		2	HOXC10	12	54383107	Silent	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	27230524	54383107	79468788	44	29147											
GLS2	27165	hgsc.bcm.edu	37	12	56865905	56865905	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	56865905	T	G	56865905	3	3	504	1	0	0	0	0	1	0	0	0	6471	1783	62	5	234	5	GLS2	12	56865905	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	2482798	56865905	76985990	45	29148											
CLLU1OS	574016	hgsc.bcm.edu	37	12	92816354	92816354	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	92816354	T	G	92816354	2	3	504	1	0	0	0	0	0	0	0	1	3543	1683	59	5		5	CLLU1OS	12	92816354	Silent	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	35950449	92816354	41035541	46	29149											
APPL2	55198	hgsc.bcm.edu;ucsc.edu	37	12	105583814	105583814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	105583814	A	C	105583814	3	2	504	1	0	0	0	0	1	0	0	0	818	101	4	5	661	5	APPL2	12	105583814	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10	12767460	105583814	28268081	47	29150											
RDH11	51109	hgsc.bcm.edu;ucsc.edu	37	14	68145133	68145133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	68145133	G	T	68145133	3	4	504	1	0	0	0	0	1	0	0	0	13203	1290	45	4	98	4	RDH11	14	68145133	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10		68145133	39204407	48	29151											
RAGE	0	hgsc.bcm.edu;ucsc.edu	37	14	102698939	102698939	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	102698939	C	G	102698939	3	3	504	1	0	0	0	0	1	0	0	0	13019	739	26	4	476	4	RAGE	14	102698939	Missense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	34553806	102698939	4650601	49	29152											
BRD7	29117	hgsc.bcm.edu;ucsc.edu	37	16	50373909	50373909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	50373909	G	A	50373909	3	1	504	1	0	0	0	0	1	0	0	0	1507	1294	45	2	1326	2	BRD7	16	50373909	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10		50373909	39980844	50	29153											
KLHL36	79786	hgsc.bcm.edu;ucsc.edu	37	16	84690712	84690712	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	84690712	T	A	84690712	3	1	504	1	0	0	0	0	1	0	0	0	8396	1696	59	5	305	5	KLHL36	16	84690712	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	34316803	84690712	5664041	51	29154											
SMG6	23293	hgsc.bcm.edu;ucsc.edu	37	17	2195864	2195864	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	2195864	A	T	2195864	2	4	504	1	0	0	0	0	0	0	0	1	14810	59	3	5		5	SMG6	17	2195864	Silent	SNP	A	TCGA-CJ-4894-01A-01D-1373-10		2195864	78999346	52	29155											
NEURL4	84461	hgsc.bcm.edu	37	17	7229846	7229846	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	7229846	C	G	7229846	3	3	504	1	0	0	0	0	1	0	0	0	10354	826	29	4	3674	4	NEURL4	17	7229846	Missense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	5033982	7229846	73965364	53	29156											
MYO15A	51168	hgsc.bcm.edu	37	17	18022777	18022777	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	18022777	G	A	18022777	2	1	504	1	0	0	0	0	0	0	0	1	10070	1020	36	2		2	MYO15A	17	18022777	Silent	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	10792931	18022777	63172433	54	29157											
DNAJC7	7266	hgsc.bcm.edu;ucsc.edu	37	17	40148372	40148372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	40148372	C	T	40148372	3	4	504	1	0	0	0	0	1	0	0	0	4656	913	32	2	1166	2	DNAJC7	17	40148372	Missense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	22125595	40148372	41046838	55	29158											
GOSR2	9570	hgsc.bcm.edu;ucsc.edu	37	17	45006907	45006907	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	45006907	T	C	45006907	2	2	504	1	0	0	0	0	0	0	0	1	6585	1596	56	3		3	GOSR2	17	45006907	Silent	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	4858535	45006907	36188303	56	29159											
KIF2B	84643	hgsc.bcm.edu	37	17	51900836	51900836	+	Missense_Mutation	SNP	C	C	T	rs59657238	bycluster;byfrequency;by1000genomes	TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	51900836	C	T	51900836	3	4	504	1	0	0	0	0	1	0	0	0	8305	855	30	2	444	2	KIF2B	17	51900836	Missense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	6893929	51900836	29294374	57	29160											
TEX14	56155	hgsc.bcm.edu	37	17	56638928	56638928	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	56638928	T	A	56638928	2	1	504	1	0	0	0	0	0	0	0	1	15790	1683	59	5		5	TEX14	17	56638928	Silent	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	4738092	56638928	24556282	58	29161											
NAT9	26151	hgsc.bcm.edu;ucsc.edu	37	17	72769044	72769044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	72769044	T	C	72769044	3	2	504	1	0	0	0	0	1	0	0	0	10189	1464	51	3	314	3	NAT9	17	72769044	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10	16130116	72769044	8426166	59	29162											
TAF4B	6875	hgsc.bcm.edu;ucsc.edu	37	18	23969945	23969945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	23969945	C	T	23969945	3	4	504	1	0	0	0	0	1	0	0	0	15539	913	32	2	2616	2	TAF4B	18	23969945	Missense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10		23969945	54107303	60	29163											
ALPK2	115701	hgsc.bcm.edu;ucsc.edu	37	18	56246200	56246200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	56246200	G	A	56246200	3	1	504	1	0	0	0	0	1	0	0	0	545	971	34	2	4744	2	ALPK2	18	56246200	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	32276255	56246200	21831048	61	29164											
DPY19L3	147991	hgsc.bcm.edu	37	19	32949399	32949399	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	32949399	G	C	32949399	3	2	504	1	0	0	0	0	1	0	0	0	4744	1319	46	4	1348	4	DPY19L3	19	32949399	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10		32949399	26179584	62	29165											
C19orf54	284325	hgsc.bcm.edu	37	19	41250530	41250530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	41250530	G	A	41250530	3	1	504	1	0	0	0	0	1	0	0	0	1938	1232	43	2	620	2	C19orf54	19	41250530	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	8301131	41250530	17878453	63	29166											
CD177	57126	hgsc.bcm.edu	37	19	43857873	43857873	+	Missense_Mutation	SNP	G	G	C	rs45441892	bycluster;byfrequency;by1000genomes	TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	43857873	G	C	43857873	3	2	504	1	0	0	0	0	1	0	0	0	2973	1087	38	4	9	4	CD177	19	43857873	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10	2607343	43857873	15271110	64	29167											
ACSS1	84532	hgsc.bcm.edu	37	20	25003643	25003643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	A	25003643	G	A	25003643	3	1	504	1	0	0	0	0	1	0	0	0	188	1261	44	2	1216	2	ACSS1	20	25003643	Missense_Mutation	SNP	G	TCGA-CJ-4894-01A-01D-1373-10		25003643	38021877	65	29168											
CHD6	84181	hgsc.bcm.edu;ucsc.edu	37	20	40116335	40116335	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	40116335	C	T	40116335	2	4	504	1	0	0	0	0	0	0	0	1	3331	680	24	2		2	CHD6	20	40116335	Silent	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	15112692	40116335	22909185	66	29169											
FITM2	128486	hgsc.bcm.edu;ucsc.edu	37	20	42935614	42935614	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	T	42935614	C	T	42935614	4	4	504	1	0	0	0	0	0	1	0	0	5906	595	21	2	352	2	FITM2	20	42935614	Nonsense_Mutation	SNP	C	TCGA-CJ-4894-01A-01D-1373-10	2819279	42935614	20089906	67	29170											
ZNF831	128611	hgsc.bcm.edu	37	20	57782032	57782032	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	G	57782032	A	G	57782032	2	3	504	1	0	0	0	0	0	0	0	1	18197	233	9	3		3	ZNF831	20	57782032	Silent	SNP	A	TCGA-CJ-4894-01A-01D-1373-10	14846418	57782032	5243488	68	29171											
LIMK2	3985	hgsc.bcm.edu	37	22	31658681	31658681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	31658681	T	C	31658681	3	2	504	1	0	0	0	0	1	0	0	0	8809	1551	54	3	841	3	LIMK2	22	31658681	Missense_Mutation	SNP	T	TCGA-CJ-4894-01A-01D-1373-10		31658681	19645885	69	29172											
TRPC5	7224	hgsc.bcm.edu	37	X	111090368	111090368	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4894-01A-01D-1373-10	TCGA-CJ-4894-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	096cee87-c528-4b13-8e6f-7e4a1dae1260	f5e4b1f9-d5e5-4b42-8d8e-831c05287971	C	111090368	A	C	111090368	3	2	504	1	0	0	0	0	1	0	0	0	16594	157	6	5	1271	5	TRPC5	23	111090368	Missense_Mutation	SNP	A	TCGA-CJ-4894-01A-01D-1373-10		111090368	44180192	70	29173											
C1orf86	199990	hgsc.bcm.edu	37	1	2121164	2121164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	G	2121164	T	G	2121164	3	3	505	1	0	0	0	0	1	0	0	0	2065	1783	62	5	259	5	C1orf86	1	2121164	Missense_Mutation	SNP	T	TCGA-CJ-4895-01A-01D-1373-10		2121164	247129457	1	29174											
ATP13A2	23400	hgsc.bcm.edu	37	1	17313021	17313021	+	Silent	SNP	G	G	A	rs115985012	bycluster;byfrequency;by1000genomes	TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	17313021	G	A	17313021	2	1	505	1	0	0	0	0	0	0	0	1	1124	1103	39	1		1	ATP13A2	1	17313021	Silent	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	15191857	17313021	231937600	2	29175											
CATSPER4	378807	hgsc.bcm.edu	37	1	26527919	26527919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	26527919	C	T	26527919	3	4	505	1	0	0	0	0	1	0	0	0	2692	536	19	1	1308	1	CATSPER4	1	26527919	Missense_Mutation	SNP	C	TCGA-CJ-4895-01A-01D-1373-10	9214898	26527919	222722702	3	29176											
ZMYM6	9204	hgsc.bcm.edu	37	1	35454280	35454280	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	C	35454280	T	C	35454280	2	2	505	1	0	0	0	0	0	0	0	1	17716	1509	53	3		3	ZMYM6	1	35454280	Silent	SNP	T	TCGA-CJ-4895-01A-01D-1373-10	8926361	35454280	213796341	4	29177											
ZFYVE9	9372	hgsc.bcm.edu	37	1	52704839	52704839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	52704839	C	T	52704839	3	4	505	1	0	0	0	0	1	0	0	0	17683	507	18	2	1756	2	ZFYVE9	1	52704839	Missense_Mutation	SNP	C	TCGA-CJ-4895-01A-01D-1373-10	17250559	52704839	196545782	5	29178											
C1orf85	112770	hgsc.bcm.edu	37	1	156264685	156264685	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	G	156264685	T	G	156264685	2	3	505	1	0	0	0	0	0	0	0	1	2064	1741	61	5		5	C1orf85	1	156264685	Silent	SNP	T	TCGA-CJ-4895-01A-01D-1373-10	103559846	156264685	92985936	6	29179											
DEGS1	8560	hgsc.bcm.edu	37	1	224377848	224377848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	224377848	C	T	224377848	3	4	505	1	0	0	0	0	1	0	0	0	4424	565	20	2	658	2	DEGS1	1	224377848	Missense_Mutation	SNP	C	TCGA-CJ-4895-01A-01D-1373-10	68113163	224377848	24872773	7	29180											
KCNK1	3775	hgsc.bcm.edu	37	1	233802464	233802464	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	G	233802464	T	G	233802464	3	3	505	1	0	0	0	0	1	0	0	0	8065	1667	58	5	485	5	KCNK1	1	233802464	Missense_Mutation	SNP	T	TCGA-CJ-4895-01A-01D-1373-10	9424616	233802464	15448157	8	29181											
ATAD2B	54454	hgsc.bcm.edu	37	2	24108653	24108653	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	24108653	G	A	24108653	4	1	505	1	0	0	0	0	0	1	0	0	1072	1386	48	2	3853	2	ATAD2B	2	24108653	Nonsense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10		24108653	219090720	9	29182											
LYPD1	116372	hgsc.bcm.edu;ucsc.edu	37	2	133403819	133403819	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	133403819	C	T	133403819	2	4	505	1	0	0	0	0	0	0	0	1	9116	639	23	1		1	LYPD1	2	133403819	Silent	SNP	C	TCGA-CJ-4895-01A-01D-1373-10	109295166	133403819	109795554	10	29183											
LCT	3938	hgsc.bcm.edu;ucsc.edu	37	2	136566910	136566910	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	136566910	G	A	136566910	2	1	505	1	0	0	0	0	0	0	0	1	8700	962	34	2		2	LCT	2	136566910	Silent	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	3163091	136566910	106632463	11	29184											
PKP4	8502	hgsc.bcm.edu;ucsc.edu	37	2	159481890	159481890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	159481890	G	T	159481890	3	4	505	1	0	0	0	0	1	0	0	0	11994	1020	36	4	1126	4	PKP4	2	159481890	Missense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	22914980	159481890	83717483	12	29185											
PASK	23178	hgsc.bcm.edu	37	2	242082263	242082263	+	Missense_Mutation	SNP	G	G	A	rs144572631		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	242082263	G	A	242082263	3	1	505	1	0	0	0	0	1	0	0	0	11479	1377	48	2	3854	2	PASK	2	242082263	Missense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	82600373	242082263	1117110	13	29186											
PSMD2	5708	hgsc.bcm.edu	37	3	184022099	184022099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	G	184022099	T	G	184022099	3	3	505	1	0	0	0	0	1	0	0	0	12708	1606	56	5	1505	5	PSMD2	3	184022099	Missense_Mutation	SNP	T	TCGA-CJ-4895-01A-01D-1373-10		184022099	14000331	14	29187											
CLCN2	1181	hgsc.bcm.edu	37	3	184064478	184064479	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	-	184064479	CT	-	184064478	7	5	505	1	0	1	0	1	0	0	0	0	3465	680	24	0	87	0	CLCN2	3	184064478	Frame_Shift_Del	DEL	CT	TCGA-CJ-4895-01A-01D-1373-10	42379	184064478	13957952	15	29188											
BCL6	604	hgsc.bcm.edu;ucsc.edu	37	3	187443369	187443369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	187443369	G	T	187443369	3	4	505	1	0	0	0	0	1	0	0	0	1376	1348	47	4	375	4	BCL6	3	187443369	Missense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	3378891	187443369	10579061	16	29189											
NRN1	51299	hgsc.bcm.edu	37	6	6002641	6002641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	C	6002641	T	C	6002641	3	2	505	1	0	0	0	0	1	0	0	0	10665	1464	51	3	291	3	NRN1	6	6002641	Missense_Mutation	SNP	T	TCGA-CJ-4895-01A-01D-1373-10		6002641	165112426	17	29190											
ATXN1	6310	hgsc.bcm.edu	37	6	16328275	16328275	+	Silent	SNP	C	C	T	rs146853248	byfrequency;alternate_allele	TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	16328275	C	T	16328275	2	4	505	1	0	0	0	0	0	0	0	1	1209	755	27	1		1	ATXN1	6	16328275	Silent	SNP	C	TCGA-CJ-4895-01A-01D-1373-10	10325634	16328275	154786792	18	29191											
SYNE1	23345	hgsc.bcm.edu	37	6	152461141	152461141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	152461141	G	T	152461141	3	4	505	1	0	0	0	0	1	0	0	0	15457	1087	38	4	1019	4	SYNE1	6	152461141	Missense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	136132866	152461141	18653926	19	29192											
RHEB	6009	hgsc.bcm.edu;ucsc.edu	37	7	151188050	151188050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	151188050	A	T	151188050	3	4	505	1	0	0	0	0	1	0	0	0	13341	420	15	5	479	5	RHEB	7	151188050	Missense_Mutation	SNP	A	TCGA-CJ-4895-01A-01D-1373-10		151188050	7950613	20	29193											
PRKAG2	51422	hgsc.bcm.edu	37	7	151478258	151478258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	G	151478258	A	G	151478258	3	3	505	1	0	0	0	0	1	0	0	0	12511	14	1	3	1319	3	PRKAG2	7	151478258	Missense_Mutation	SNP	A	TCGA-CJ-4895-01A-01D-1373-10	290208	151478258	7660405	21	29194											
MTUS1	57509	hgsc.bcm.edu;ucsc.edu	37	8	17612773	17612773	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	17612773	G	A	17612773	4	1	505	1	0	0	0	0	0	1	0	0	9972	1299	45	2	3643	2	MTUS1	8	17612773	Nonsense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10		17612773	128751249	22	29195											
PSD3	23362	hgsc.bcm.edu	37	8	18725300	18725300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	18725300	A	T	18725300	3	4	505	1	0	0	0	0	1	0	0	0	12658	156	6	5	1713	5	PSD3	8	18725300	Missense_Mutation	SNP	A	TCGA-CJ-4895-01A-01D-1373-10	1112527	18725300	127638722	23	29196											
GTF2E2	2961	hgsc.bcm.edu	37	8	30436496	30436496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	C	30436496	T	C	30436496	3	2	505	1	0	0	0	0	1	0	0	0	6864	1464	51	3	61	3	GTF2E2	8	30436496	Missense_Mutation	SNP	T	TCGA-CJ-4895-01A-01D-1373-10	11711196	30436496	115927526	24	29197											
TMEM64	169200	hgsc.bcm.edu	37	8	91657421	91657421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	G	91657421	A	G	91657421	3	3	505	1	0	0	0	0	1	0	0	0	16205	159	6	3	441	3	TMEM64	8	91657421	Missense_Mutation	SNP	A	TCGA-CJ-4895-01A-01D-1373-10	61220925	91657421	54706601	25	29198											
GRIN1	2902	hgsc.bcm.edu	37	9	140057373	140057373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	140057373	G	A	140057373	3	1	505	1	0	0	0	0	1	0	0	0	6785	1261	44	2	2214	2	GRIN1	9	140057373	Missense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10		140057373	1156058	26	29199											
FBXO18	84893	hgsc.bcm.edu;ucsc.edu	37	10	5963284	5963284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	5963284	G	A	5963284	3	1	505	1	0	0	0	0	1	0	0	0	5738	1029	36	2	2380	2	FBXO18	10	5963284	Missense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10		5963284	129571463	27	29200											
FAM188A	80013	hgsc.bcm.edu	37	10	15902225	15902225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	G	15902225	A	G	15902225	3	3	505	1	0	0	0	0	1	0	0	0	5518	101	4	3	1323	3	FAM188A	10	15902225	Missense_Mutation	SNP	A	TCGA-CJ-4895-01A-01D-1373-10	9938941	15902225	119632522	28	29201											
ZNF33A	7581	hgsc.bcm.edu	37	10	38343536	38343539	+	Frame_Shift_Del	DEL	TATT	TATT	-	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	TATT	TATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	-	38343539	TATT	-	38343536	7	5	505	1	0	1	0	1	0	0	0	0	17866	1522	53	0	498	0	ZNF33A	10	38343536	Frame_Shift_Del	DEL	TATT	TCGA-CJ-4895-01A-01D-1373-10	22441311	38343536	97191211	29	29202											
USP54	159195	hgsc.bcm.edu;ucsc.edu	37	10	75258858	75258858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	75258858	G	T	75258858	3	4	505	1	0	0	0	0	1	0	0	0	17097	1020	36	4	474	4	USP54	10	75258858	Missense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	36915322	75258858	60275889	30	29203											
CARS	833	hgsc.bcm.edu	37	11	3028150	3028150	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	G	3028150	T	G	3028150	3	3	505	1	0	0	0	0	1	0	0	0	2659	1725	60	5	415	5	CARS	11	3028150	Missense_Mutation	SNP	T	TCGA-CJ-4895-01A-01D-1373-10		3028150	131978366	31	29204											
KDM2A	22992	hgsc.bcm.edu	37	11	67017709	67017709	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	67017709	G	A	67017709	2	1	505	1	0	0	0	0	0	0	0	1	8131	1277	45	2		2	KDM2A	11	67017709	Silent	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	63989559	67017709	67988807	32	29205											
ADAMTS8	11095	hgsc.bcm.edu	37	11	130278689	130278689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	C	130278689	T	C	130278689	3	2	505	1	0	0	0	0	1	0	0	0	272	1551	54	3	784	3	ADAMTS8	11	130278689	Missense_Mutation	SNP	T	TCGA-CJ-4895-01A-01D-1373-10	63260980	130278689	4727827	33	29206											
GYS2	2998	hgsc.bcm.edu;ucsc.edu	37	12	21713365	21713365	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	21713365	A	T	21713365	3	4	505	1	0	0	0	0	1	0	0	0	6920	246	9	5	1023	5	GYS2	12	21713365	Missense_Mutation	SNP	A	TCGA-CJ-4895-01A-01D-1373-10		21713365	112138530	34	29207											
LRRK2	120892	hgsc.bcm.edu;ucsc.edu	37	12	40692241	40692241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	C	40692241	T	C	40692241	3	2	505	1	0	0	0	0	1	0	0	0	9040	1638	57	3	3387	3	LRRK2	12	40692241	Missense_Mutation	SNP	T	TCGA-CJ-4895-01A-01D-1373-10	18978876	40692241	93159654	35	29208											
FAM179B	23116	hgsc.bcm.edu;ucsc.edu	37	14	45433129	45433129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	45433129	C	A	45433129	3	1	505	1	0	0	0	0	1	0	0	0	5510	681	24	4	1507	4	FAM179B	14	45433129	Missense_Mutation	SNP	C	TCGA-CJ-4895-01A-01D-1373-10		45433129	61916411	36	29209											
C18orf19	0	hgsc.bcm.edu	37	18	13681611	13681611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	13681611	C	A	13681611	3	1	505	1	0	0	0	0	1	0	0	0	1898	797	28	4	364	4	C18orf19	18	13681611	Missense_Mutation	SNP	C	TCGA-CJ-4895-01A-01D-1373-10		13681611	64395637	37	29210											
FZR1	51343	hgsc.bcm.edu	37	19	3531748	3531748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	3531748	G	A	3531748	3	1	505	1	0	0	0	0	1	0	0	0	6145	1145	40	1	787	1	FZR1	19	3531748	Missense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10		3531748	55597235	38	29211											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9061085	9061085	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	9061085	G	T	9061085	2	4	505	1	0	0	0	0	0	0	0	1	9980	1280	45	4		4	MUC16	19	9061085	Silent	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	5529337	9061085	50067898	39	29212											
ZNF699	374879	hgsc.bcm.edu;ucsc.edu	37	19	9406534	9406534	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	T	9406534	A	T	9406534	3	4	505	1	0	0	0	0	1	0	0	0	18113	304	11	5	386	5	ZNF699	19	9406534	Missense_Mutation	SNP	A	TCGA-CJ-4895-01A-01D-1373-10	345449	9406534	49722449	40	29213											
RAD23A	5886	hgsc.bcm.edu;ucsc.edu	37	19	13058667	13058667	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	13058667	G	A	13058667	2	1	505	1	0	0	0	0	0	0	0	1	12995	991	35	2		2	RAD23A	19	13058667	Silent	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	3652133	13058667	46070316	41	29214											
CACNA1A	773	hgsc.bcm.edu;ucsc.edu	37	19	13325357	13325357	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	13325357	G	A	13325357	2	1	505	1	0	0	0	0	0	0	0	1	2540	933	33	2		2	CACNA1A	19	13325357	Silent	SNP	G	TCGA-CJ-4895-01A-01D-1373-10	266690	13325357	45803626	42	29215											
LILRA5	353514	hgsc.bcm.edu;ucsc.edu	37	19	54822747	54822747	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	C	54822747	A	C	54822747	3	2	505	1	0	0	0	0	1	0	0	0	8795	304	11	5	348	5	LILRA5	19	54822747	Missense_Mutation	SNP	A	TCGA-CJ-4895-01A-01D-1373-10	41497390	54822747	4306236	43	29216											
SLC12A5	57468	hgsc.bcm.edu	37	20	44686173	44686173	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	G	44686173	C	G	44686173	3	3	505	1	0	0	0	0	1	0	0	0	14399	681	24	4	3507	4	SLC12A5	20	44686173	Missense_Mutation	SNP	C	TCGA-CJ-4895-01A-01D-1373-10		44686173	18339347	44	29217											
ODZ1	0	hgsc.bcm.edu;ucsc.edu	37	X	123517592	123517592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4895-01A-01D-1373-10	TCGA-CJ-4895-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	3325f31d-a241-4fbe-9790-fef11ded224e	fbafc349-c909-49da-ba80-e7d1d7c7e2b6	A	123517592	G	A	123517592	3	1	505	1	0	0	0	0	1	0	0	0	10841	1290	45	2	1021	2	ODZ1	23	123517592	Missense_Mutation	SNP	G	TCGA-CJ-4895-01A-01D-1373-10		123517592	31752968	45	29218											
DPH2	1802	broad.mit.edu	37	1	44436377	44436377	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	44436377	A	A	44436377	3	1	506	1	0	0	0	0	1	0	0	0	4722	1203	42	2	263	2	DPH2	1	44436377	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08		44436377	204814244	1	29219											
KDM5B	10765	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	202743819	202743819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	G	202743819	C	G	202743819	3	3	506	1	0	0	0	0	1	0	0	0	8141	564	20	4	4407	4	KDM5B	1	202743819	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08	158307442	202743819	46506802	2	29220											
PUM2	23369	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	20511383	20511383	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	20511383	A	T	20511383	3	4	506	1	0	0	0	0	1	0	0	0	12839	330	12	5	2872	5	PUM2	2	20511383	Missense_Mutation	SNP	A	TCGA-CJ-4897-01A-03D-1429-08		20511383	222687990	3	29221											
PREPL	9581	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44556213	44556213	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	44556213	A	C	44556213	2	2	506	1	0	0	0	0	0	0	0	1	12485	175	7	5		5	PREPL	2	44556213	Silent	SNP	A	TCGA-CJ-4897-01A-03D-1429-08	24044830	44556213	198643160	4	29222											
ITPRIPL1	150771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	96992895	96992895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	96992895	G	T	96992895	3	4	506	1	0	0	0	0	1	0	0	0	7931	1377	48	4	566	4	ITPRIPL1	2	96992895	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	52436682	96992895	146206478	5	29223											
ALPP	250	broad.mit.edu;hgsc.bcm.edu	37	2	233246013	233246013	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	233246013	C	T	233246013	2	4	506	1	0	0	0	0	0	0	0	1	548	547	19	1		1	ALPP	2	233246013	Silent	SNP	C	TCGA-CJ-4897-01A-03D-1429-08	136253118	233246013	9953360	6	29224											
POLQ	10721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121207746	121207746	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	121207746	T	A	121207746	2	1	506	1	0	0	0	0	0	0	0	1	12215	1799	63	5		5	POLQ	3	121207746	Silent	SNP	T	TCGA-CJ-4897-01A-03D-1429-08		121207746	76814684	7	29225											
DNAJB8	165721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128181497	128181497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	128181497	G	A	128181497	3	1	506	1	0	0	0	0	1	0	0	0	4628	1087	38	1	110	1	DNAJB8	3	128181497	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	6973751	128181497	69840933	8	29226											
LIAS	11019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	39472863	39472863	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	39472863	T	C	39472863	2	2	506	1	0	0	0	0	0	0	0	1	8785	1683	59	3		3	LIAS	4	39472863	Silent	SNP	T	TCGA-CJ-4897-01A-03D-1429-08		39472863	151681413	9	29227											
ANK2	287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	114267059	114267059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	114267059	C	T	114267059	3	4	506	1	0	0	0	0	1	0	0	0	621	536	19	1	4455	1	ANK2	4	114267059	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08	74794196	114267059	76887217	10	29228											
SLC36A1	206358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150867782	150867782	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	150867782	C	T	150867782	2	4	506	1	0	0	0	0	0	0	0	1	14606	581	21	2		2	SLC36A1	5	150867782	Silent	SNP	C	TCGA-CJ-4897-01A-03D-1429-08		150867782	30047478	11	29229											
FAT2	2196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150948075	150948075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	150948075	C	A	150948075	3	1	506	1	0	0	0	0	1	0	0	0	5697	855	30	4	12723	4	FAT2	5	150948075	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08	80293	150948075	29967185	12	29230											
VPS52	6293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33231657	33231657	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	33231657	C	T	33231657	5	4	506	1	0	0	0	0	0	0	1	0	17226	695	24	2	571	2	VPS52	6	33231657	Splice_Site	SNP	C	TCGA-CJ-4897-01A-03D-1429-08		33231657	137883410	13	29231											
APOBEC2	10930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	41021140	41021140	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	41021140	G	A	41021140	2	1	506	1	0	0	0	0	0	0	0	1	788	1219	43	2		2	APOBEC2	6	41021140	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	7789483	41021140	130093927	14	29232											
GPR116	221395	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46849806	46849806	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	46849806	G	A	46849806	2	1	506	1	0	0	0	0	0	0	0	1	6640	1074	38	1		1	GPR116	6	46849806	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	5828666	46849806	124265261	15	29233											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu	37	6	152599304	152599304	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	152599304	G	A	152599304	2	1	506	1	0	0	0	0	0	0	0	1	15457	962	34	2		2	SYNE1	6	152599304	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	105749498	152599304	18515763	16	29234											
ICA1	3382	broad.mit.edu;ucsc.edu	37	7	8178473	8178473	+	Missense_Mutation	SNP	C	G	G	rs143861719	byfrequency	TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	G	8178473	G	G	8178473	3	3	506	1	0	0	0	0	1	0	0	0	7484	681	24	4	406	4	ICA1	7	8178473	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08		8178473	150960190	17	29235											
ABCB5	340273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	20768032	20768032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	20768032	G	A	20768032	3	1	506	1	0	0	0	0	1	0	0	0	44	971	34	2	2948	2	ABCB5	7	20768032	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	12589559	20768032	138370631	18	29236											
KBTBD2	25948	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	32909021	32909021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	G	32909021	A	G	32909021	3	3	506	1	0	0	0	0	1	0	0	0	8000	14	1	3	67	3	KBTBD2	7	32909021	Missense_Mutation	SNP	A	TCGA-CJ-4897-01A-03D-1429-08	12140989	32909021	126229642	19	29237											
MLL5	55904	hgsc.bcm.edu;ucsc.edu	37	7	104748211	104748211	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	-	104748211	G	-	104748211	7	5	506	1	0	1	0	1	0	0	0	0	9631	1291	45	0	3385	0	MLL5	7	104748211	Frame_Shift_Del	DEL	G	TCGA-CJ-4897-01A-03D-1429-08	71839190	104748211	54390452	20	29238											
MLL5	55904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	104752966	104752966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	G	104752966	A	G	104752966	3	3	506	1	0	0	0	0	1	0	0	0	9631	130	5	3	4861	3	MLL5	7	104752966	Missense_Mutation	SNP	A	TCGA-CJ-4897-01A-03D-1429-08	4755	104752966	54385697	21	29239											
NOS3	4846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150693640	150693640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	150693640	G	T	150693640	3	4	506	1	0	0	0	0	1	0	0	0	10551	1014	35	4	429	4	NOS3	7	150693640	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	45940674	150693640	8445023	22	29240											
FREM1	158326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	14823201	14823201	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	G	14823201	C	G	14823201	3	3	506	1	0	0	0	0	1	0	0	0	6051	710	25	4	4395	4	FREM1	9	14823201	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08		14823201	126390230	23	29241											
HEMGN	55363	broad.mit.edu;ucsc.edu	37	9	100693156	100693156	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	100693156	T	T	100693156	3	4	506	1	0	0	0	0	1	0	0	0	7057	1000	35	4	941	4	HEMGN	9	100693156	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	85869955	100693156	40520275	24	29242											
FRMPD2	143162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	49392912	49392912	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	-	49392912	T	-	49392912	7	5	506	1	0	1	0	1	0	0	0	0	6065	1493	52	0	1601	0	FRMPD2	10	49392912	Frame_Shift_Del	DEL	T	TCGA-CJ-4897-01A-03D-1429-08		49392912	86141835	25	29243											
JMJD1C	221037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	64957276	64957276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	64957276	C	T	64957276	3	4	506	1	0	0	0	0	1	0	0	0	7957	826	29	2	2139	2	JMJD1C	10	64957276	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08	15564364	64957276	70577471	26	29244											
FAM190B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	86132205	86132205	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	86132205	G	A	86132205	4	1	506	1	0	0	0	0	0	1	0	0	5526	1357	47	2	1399	2	FAM190B	10	86132205	Nonsense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	21174929	86132205	49402542	27	29245											
CRTAC1	55118	broad.mit.edu	37	10	99655168	99655168	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	99655168	A	A	99655168	2	1	506	1	0	0	0	0	0	0	0	1	3898	958	34	2		2	CRTAC1	10	99655168	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	13522963	99655168	35879579	28	29246											
HPS1	3257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	100177390	100177390	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	100177390	G	A	100177390	2	1	506	1	0	0	0	0	0	0	0	1	7346	1252	44	2		2	HPS1	10	100177390	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	522222	100177390	35357357	29	29247											
GAL3ST3	89792	broad.mit.edu;hgsc.bcm.edu	37	11	65810470	65810470	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	65810470	G	A	65810470	2	1	506	1	0	0	0	0	0	0	0	1	6206	1136	40	1		1	GAL3ST3	11	65810470	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08		65810470	69196046	30	29248											
PACS1	55690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65983684	65983684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	G	65983684	C	G	65983684	3	3	506	1	0	0	0	0	1	0	0	0	11379	855	30	4	773	4	PACS1	11	65983684	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08	173214	65983684	69022832	31	29249											
SPTBN2	6712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66472813	66472813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	66472813	C	T	66472813	3	4	506	1	0	0	0	0	1	0	0	0	15132	536	19	1	5334	1	SPTBN2	11	66472813	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08	489129	66472813	68533703	32	29250											
COPS7A	50813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6837091	6837091	+	Splice_Site	SNP	G	G	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	6837091	G	C	6837091	5	2	506	1	0	0	0	0	0	0	1	0	3740	985	34	4	168	4	COPS7A	12	6837091	Splice_Site	SNP	G	TCGA-CJ-4897-01A-03D-1429-08		6837091	127014804	33	29251											
ALG10B	144245	broad.mit.edu;hgsc.bcm.edu	37	12	38714340	38714340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	38714340	G	T	38714340	3	4	506	1	0	0	0	0	1	0	0	0	512	1319	46	4	757	4	ALG10B	12	38714340	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	31877249	38714340	95137555	34	29252											
CEP290	80184	broad.mit.edu	37	12	88483261	88483261	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	88483261	C	C	88483261	3	2	506	1	0	0	0	0	1	0	0	0	3255	1386	48	4	3958	4	CEP290	12	88483261	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	49768921	88483261	45368634	35	29253											
NBEA	26960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	35747666	35747668	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	-	35747668	TCT	-	35747666	7	5	506	1	0	1	0	1	0	0	0	0	10194	1435	50	0	4595	0	NBEA	13	35747666	In_Frame_Del	DEL	TCT	TCGA-CJ-4897-01A-03D-1429-08		35747666	79422212	36	29254											
KIAA1704	55425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	45578485	45578485	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	45578485	A	C	45578485	3	2	506	1	0	0	0	0	1	0	0	0	8259	333	12	5	140	5	KIAA1704	13	45578485	Missense_Mutation	SNP	A	TCGA-CJ-4897-01A-03D-1429-08	9830819	45578485	69591393	37	29255											
INTS6	26512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	51948840	51948840	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	51948840	G	A	51948840	4	1	506	1	0	0	0	0	0	1	0	0	7789	1299	45	2	861	2	INTS6	13	51948840	Nonsense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	6370355	51948840	63221038	38	29256											
WDR89	112840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64066630	64066630	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	64066630	G	A	64066630	2	1	506	1	0	0	0	0	0	0	0	1	17348	933	33	2		2	WDR89	14	64066630	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08		64066630	43282910	39	29257											
SETD3	84193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	99932086	99932086	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	G	99932086	A	G	99932086	2	3	506	1	0	0	0	0	0	0	0	1	14145	175	7	3		3	SETD3	14	99932086	Silent	SNP	A	TCGA-CJ-4897-01A-03D-1429-08	35865456	99932086	7417454	40	29258											
AQR	9716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	35176806	35176806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	35176806	T	C	35176806	3	2	506	1	0	0	0	0	1	0	0	0	835	1763	61	3	1550	3	AQR	15	35176806	Missense_Mutation	SNP	T	TCGA-CJ-4897-01A-03D-1429-08		35176806	67354586	41	29259											
TTBK2	146057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43109262	43109262	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	43109262	G	C	43109262	3	2	506	1	0	0	0	0	1	0	0	0	16689	1058	37	4	3199	4	TTBK2	15	43109262	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	7932456	43109262	59422130	42	29260											
SECISBP2L	9728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49320719	49320719	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	49320719	G	T	49320719	4	4	506	1	0	0	0	0	0	1	0	0	14020	1311	46	4	2397	4	SECISBP2L	15	49320719	Nonsense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	6211457	49320719	53210673	43	29261											
NEDD4	4734	broad.mit.edu;ucsc.edu	37	15	56140568	56140568	+	Splice_Site	DEL	A	-	-	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	-	56140568	-	-	56140568	8	5	506	1	0	1	0	1	0	0	1	0	10317	405	14	0	1210	0	NEDD4	15	56140568	Splice_Site	DEL	A	TCGA-CJ-4897-01A-03D-1429-08	6819849	56140568	46390824	44	29262											
HERC1	8925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63948032	63948032	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	63948032	G	A	63948032	2	1	506	1	0	0	0	0	0	0	0	1	7064	1020	36	2		2	HERC1	15	63948032	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	7807464	63948032	38583360	45	29263											
SMAD3	4088	hgsc.bcm.edu;ucsc.edu	37	15	67477111	67477111	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	-	67477111	G	-	67477111	7	5	506	1	0	1	0	1	0	0	0	0	14772	1020	36	0	1022	0	SMAD3	15	67477111	Frame_Shift_Del	DEL	G	TCGA-CJ-4897-01A-03D-1429-08	3529079	67477111	35054281	46	29264											
NOX5	79400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	69328249	69328249	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	69328249	C	T	69328249	2	4	506	1	0	0	0	0	0	0	0	1	10566	668	24	2		2	NOX5	15	69328249	Silent	SNP	C	TCGA-CJ-4897-01A-03D-1429-08	1851138	69328249	33203143	47	29265											
ZKSCAN2	342357	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	25266607	25266607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	25266607	C	A	25266607	3	1	506	1	0	0	0	0	1	0	0	0	17699	652	23	4	2421	4	ZKSCAN2	16	25266607	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08		25266607	65088146	48	29266											
ZDHHC1	29800	broad.mit.edu;ucsc.edu	37	16	67429119	67429119	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	67429119	T	T	67429119	3	4	506	1	0	0	0	0	1	0	0	0	17612	942	33	4	449	4	ZDHHC1	16	67429119	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	42162512	67429119	22925634	49	29267											
ZFHX3	463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	72830806	72830806	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	72830806	A	T	72830806	2	4	506	1	0	0	0	0	0	0	0	1	17646	146	6	5		5	ZFHX3	16	72830806	Silent	SNP	A	TCGA-CJ-4897-01A-03D-1429-08	5401687	72830806	17523947	50	29268											
C17orf74	201243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7330515	7330515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	7330515	C	T	7330515	3	4	506	1	0	0	0	0	1	0	0	0	1881	739	26	2	1215	2	C17orf74	17	7330515	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08		7330515	73864695	51	29269											
C17orf68	0	hgsc.bcm.edu;ucsc.edu	37	17	8141944	8141944	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	-	8141944	G	-	8141944	7	5	506	1	0	1	0	1	0	0	0	0	1878	1049	37	0	3536	0	C17orf68	17	8141944	Frame_Shift_Del	DEL	G	TCGA-CJ-4897-01A-03D-1429-08	811429	8141944	73053266	52	29270											
KRT24	192666	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38859817	38859817	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	38859817	G	A	38859817	2	1	506	1	0	0	0	0	0	0	0	1	8468	1165	41	2		2	KRT24	17	38859817	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	30717873	38859817	42335393	53	29271											
DIRAS1	148252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2717570	2717570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	2717570	C	A	2717570	3	1	506	1	0	0	0	0	1	0	0	0	4532	623	22	4	365	4	DIRAS1	19	2717570	Missense_Mutation	SNP	C	TCGA-CJ-4897-01A-03D-1429-08		2717570	56411413	54	29272											
PRAM1	84106	broad.mit.edu;ucsc.edu	37	19	8564274	8564274	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	8564274	C	C	8564274	3	2	506	1	0	0	0	0	1	0	0	0	12433	1174	41	4	1627	4	PRAM1	19	8564274	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	5846704	8564274	50564709	55	29273											
PLEKHG2	64857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39913384	39913384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	39913384	G	A	39913384	3	1	506	1	0	0	0	0	1	0	0	0	12076	1290	45	2	1756	2	PLEKHG2	19	39913384	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	31349110	39913384	19215599	56	29274											
PPP5C	5536	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46890487	46890487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	46890487	G	C	46890487	3	2	506	1	0	0	0	0	1	0	0	0	12416	1029	36	4	1072	4	PPP5C	19	46890487	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	6977103	46890487	12238496	57	29275											
NTN5	126147	broad.mit.edu;hgsc.bcm.edu	37	19	49173943	49173943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	49173943	G	A	49173943	3	1	506	1	0	0	0	0	1	0	0	0	10710	1174	41	2	1192	2	NTN5	19	49173943	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	2283456	49173943	9955040	58	29276											
ZNF583	147949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56934784	56934784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	56934784	G	A	56934784	3	1	506	1	0	0	0	0	1	0	0	0	18027	1319	46	2	771	2	ZNF583	19	56934784	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	7760841	56934784	2194199	59	29277											
SIRPB2	284759	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	1460670	1460670	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	1460670	T	C	1460670	2	2	506	1	0	0	0	0	0	0	0	1	14347	1625	57	3		3	SIRPB2	20	1460670	Silent	SNP	T	TCGA-CJ-4897-01A-03D-1429-08		1460670	61564850	60	29278											
TOX2	84969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	42574588	42574588	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	42574588	G	A	42574588	2	1	506	1	0	0	0	0	0	0	0	1	16390	1132	40	1		1	TOX2	20	42574588	Silent	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	41113918	42574588	20450932	61	29279											
ZNF831	128611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	57769082	57769082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	A	57769082	G	A	57769082	3	1	506	1	0	0	0	0	1	0	0	0	18197	971	34	2	3010	2	ZNF831	20	57769082	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	15194494	57769082	5256438	62	29280											
KRTAP13-4	284827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	31802847	31802847	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	G	31802847	T	G	31802847	3	3	506	1	0	0	0	0	1	0	0	0	8532	1522	53	5	256	5	KRTAP13-4	21	31802847	Missense_Mutation	SNP	T	TCGA-CJ-4897-01A-03D-1429-08		31802847	16327048	63	29281											
TRIOBP	11078	hgsc.bcm.edu;ucsc.edu	37	22	38134696	38134696	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	-	38134696	C	-	38134696	7	5	506	1	0	1	0	1	0	0	0	0	16565	506	18	0	5184	0	TRIOBP	22	38134696	Frame_Shift_Del	DEL	C	TCGA-CJ-4897-01A-03D-1429-08		38134696	13169870	64	29282											
RAI2	10742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	17819213	17819213	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	17819213	C	T	17819213	2	4	506	1	0	0	0	0	0	0	0	1	13022	639	23	1		1	RAI2	23	17819213	Silent	SNP	C	TCGA-CJ-4897-01A-03D-1429-08		17819213	137451347	65	29283											
GSPT2	23708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	51487802	51487802	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	51487802	C	T	51487802	2	4	506	1	0	0	0	0	0	0	0	1	6834	874	31	1		1	GSPT2	23	51487802	Silent	SNP	C	TCGA-CJ-4897-01A-03D-1429-08	33668589	51487802	103782758	66	29284											
HUWE1	10075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53675215	53675215	+	Silent	SNP	A	A	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	53675215	A	C	53675215	2	2	506	1	0	0	0	0	0	0	0	1	7468	1	1	5		5	HUWE1	23	53675215	Silent	SNP	A	TCGA-CJ-4897-01A-03D-1429-08	2187413	53675215	101595345	67	29285											
GUCY2F	2986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	108708503	108708503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	T	108708503	G	T	108708503	3	4	506	1	0	0	0	0	1	0	0	0	6905	1368	48	4	2494	4	GUCY2F	23	108708503	Missense_Mutation	SNP	G	TCGA-CJ-4897-01A-03D-1429-08	55033288	108708503	46562057	68	29286											
XIAP	331	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	123020288	123020288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	G	123020288	A	G	123020288	3	3	506	1	0	0	0	0	1	0	0	0	17440	101	4	3	778	3	XIAP	23	123020288	Missense_Mutation	SNP	A	TCGA-CJ-4897-01A-03D-1429-08	14311785	123020288	32250272	69	29287											
RBMX	27316	hgsc.bcm.edu	37	X	135961597	135961597	+	RNA	SNP	T	T	C	novel		TCGA-CJ-4897-01A-03D-1429-08	TCGA-CJ-4897-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1331eec-e2df-4924-918b-7e5134e933c2	d294e13c-9c97-4dcb-a1ac-4b345a27c4de	C	135961597	T	C	135961597	1	2	506	0	1	0	0	0	0	0	0	0	13164	1856	64	3		3	RBMX	23	135961597	RNA	SNP	T	TCGA-CJ-4897-01A-03D-1429-08	12941309	135961597	19308963	70	29288											
PRAMEF1	65121	broad.mit.edu;hgsc.bcm.edu	37	1	12854406	12854406	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	A	12854406	G	A	12854406	2	1	507	1	0	0	0	0	0	0	0	1	12435	1335	47	2		2	PRAMEF1	1	12854406	Silent	SNP	G	TCGA-CJ-4899-01A-01D-1462-08		12854406	236396215	1	29289											
POGK	57645	broad.mit.edu;hgsc.bcm.edu	37	1	166816822	166816822	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	G	166816822	C	G	166816822	2	3	507	1	0	0	0	0	0	0	0	1	12192	668	24	4		4	POGK	1	166816822	Silent	SNP	C	TCGA-CJ-4899-01A-01D-1462-08	153962416	166816822	82433799	2	29290											
WNT3A	89780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	228246774	228246774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	228246774	G	T	228246774	3	4	507	1	0	0	0	0	1	0	0	0	17401	1058	37	4	681	4	WNT3A	1	228246774	Missense_Mutation	SNP	G	TCGA-CJ-4899-01A-01D-1462-08	61429952	228246774	21003847	3	29291											
PSME4	23198	broad.mit.edu	37	2	54176396	54176396	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	A	54176396	A	A	54176396	3	1	507	1	0	0	0	0	1	0	0	0	12719	1490	52	5	5444	5	PSME4	2	54176396	Missense_Mutation	SNP	T	TCGA-CJ-4899-01A-01D-1462-08		54176396	189022977	4	29292											
MAT2A	4144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	85768975	85768975	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	C	85768975	T	C	85768975	2	2	507	1	0	0	0	0	0	0	0	1	9337	1567	55	3		3	MAT2A	2	85768975	Silent	SNP	T	TCGA-CJ-4899-01A-01D-1462-08	31592579	85768975	157430398	5	29293											
FBLN7	129804	broad.mit.edu	37	2	112896287	112896287	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	A	112896287	A	A	112896287	3	1	507	1	0	0	0	0	1	0	0	0	5708	623	22	4	57	4	FBLN7	2	112896287	Missense_Mutation	SNP	C	TCGA-CJ-4899-01A-01D-1462-08	27127312	112896287	130303086	6	29294											
COL3A1	1281	hgsc.bcm.edu;ucsc.edu	37	2	189875056	189875056	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	-	189875056	G	-	189875056	7	5	507	1	0	1	0	1	0	0	0	0	3690	1145	40	0	4170	0	COL3A1	2	189875056	Frame_Shift_Del	DEL	G	TCGA-CJ-4899-01A-01D-1462-08	76978769	189875056	53324317	7	29295											
COL7A1	1294	broad.mit.edu	37	3	48609479	48609479	+	Splice_Site	SNP	C	T	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	48609479	T	T	48609479	5	4	507	1	0	0	0	0	0	0	1	0	3706	695	24	2	1923	2	COL7A1	3	48609479	Splice_Site	SNP	C	TCGA-CJ-4899-01A-01D-1462-08		48609479	149412951	8	29296											
CEP135	9662	broad.mit.edu;hgsc.bcm.edu	37	4	56825852	56825852	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	56825852	C	T	56825852	4	4	507	1	0	0	0	0	0	1	0	0	3249	827	29	2	637	2	CEP135	4	56825852	Nonsense_Mutation	SNP	C	TCGA-CJ-4899-01A-01D-1462-08		56825852	134328424	9	29297											
DTWD2	285605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	118280326	118280326	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	G	118280326	A	G	118280326	2	3	507	1	0	0	0	0	0	0	0	1	4794	41	2	3		3	DTWD2	5	118280326	Silent	SNP	A	TCGA-CJ-4899-01A-01D-1462-08		118280326	62634934	10	29298											
TCOF1	6949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149743741	149743741	+	Missense_Mutation	SNP	G	G	T	rs145365677	alternate_allele	TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	149743741	G	T	149743741	3	4	507	1	0	0	0	0	1	0	0	0	15720	1145	40	4	240	4	TCOF1	5	149743741	Missense_Mutation	SNP	G	TCGA-CJ-4899-01A-01D-1462-08	31463415	149743741	31171519	11	29299											
IGF2R	3482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160465623	160465623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	G	160465623	T	G	160465623	3	3	507	1	0	0	0	0	1	0	0	0	7583	1783	62	5	1749	5	IGF2R	6	160465623	Missense_Mutation	SNP	T	TCGA-CJ-4899-01A-01D-1462-08		160465623	10649444	12	29300											
UBN2	254048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	138958746	138958746	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	A	138958746	T	A	138958746	2	1	507	1	0	0	0	0	0	0	0	1	16905	1567	55	5		5	UBN2	7	138958746	Silent	SNP	T	TCGA-CJ-4899-01A-01D-1462-08		138958746	20179917	13	29301											
CSMD1	64478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	2818703	2818703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	2818703	G	T	2818703	3	4	507	1	0	0	0	0	1	0	0	0	3946	1145	40	4	1068	4	CSMD1	8	2818703	Missense_Mutation	SNP	G	TCGA-CJ-4899-01A-01D-1462-08		2818703	143545319	14	29302											
C10orf18	0	broad.mit.edu;ucsc.edu	37	10	5789077	5789077	+	Silent	SNP	A	C	C	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	C	5789077	C	C	5789077	2	2	507	1	0	0	0	0	0	0	0	1	1598	175	7	5		5	C10orf18	10	5789077	Silent	SNP	A	TCGA-CJ-4899-01A-01D-1462-08		5789077	129745670	15	29303											
BBOX1	8424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	27147298	27147298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	27147298	G	T	27147298	3	4	507	1	0	0	0	0	1	0	0	0	1334	1319	46	4	956	4	BBOX1	11	27147298	Missense_Mutation	SNP	G	TCGA-CJ-4899-01A-01D-1462-08		27147298	107859218	16	29304	361	2									
BBOX1	8424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	27147299	27147299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	A	27147299	C	A	27147299	3	1	507	1	0	0	0	0	1	0	0	0	1334	797	28	4	957	4	BBOX1	11	27147299	Missense_Mutation	SNP	C	TCGA-CJ-4899-01A-01D-1462-08	1	27147299	107859217	17	29305	361	2									
TSGA10IP	254187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65714961	65714961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	65714961	C	T	65714961	3	4	507	1	0	0	0	0	1	0	0	0	16630	797	28	2	675	2	TSGA10IP	11	65714961	Missense_Mutation	SNP	C	TCGA-CJ-4899-01A-01D-1462-08	38567662	65714961	69291555	18	29306											
UBE4A	9354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118263549	118263549	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	C	118263549	G	C	118263549	3	2	507	1	0	0	0	0	1	0	0	0	16894	1377	48	4	3104	4	UBE4A	11	118263549	Missense_Mutation	SNP	G	TCGA-CJ-4899-01A-01D-1462-08	52548588	118263549	16742967	19	29307											
LTBP2	4053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74972836	74972836	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	74972836	C	T	74972836	2	4	507	1	0	0	0	0	0	0	0	1	9081	581	21	2		2	LTBP2	14	74972836	Silent	SNP	C	TCGA-CJ-4899-01A-01D-1462-08		74972836	32376704	20	29308											
USP50	373509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	50835798	50835798	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	A	50835798	T	A	50835798	3	1	507	1	0	0	0	0	1	0	0	0	17094	1838	64	5	583	5	USP50	15	50835798	Missense_Mutation	SNP	T	TCGA-CJ-4899-01A-01D-1462-08		50835798	51695594	21	29309											
TRPM7	54822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	50891464	50891464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	C	50891464	A	C	50891464	3	2	507	1	0	0	0	0	1	0	0	0	16603	358	13	5	2651	5	TRPM7	15	50891464	Missense_Mutation	SNP	A	TCGA-CJ-4899-01A-01D-1462-08	55666	50891464	51639928	22	29310											
RNF40	9810	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30777596	30777596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	30777596	G	T	30777596	3	4	507	1	0	0	0	0	1	0	0	0	13506	1087	38	4	1136	4	RNF40	16	30777596	Missense_Mutation	SNP	G	TCGA-CJ-4899-01A-01D-1462-08		30777596	59577157	23	29311											
SLC47A1	55244	broad.mit.edu;ucsc.edu	37	17	19470436	19470436	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	G	19470436	G	G	19470436	3	3	507	1	0	0	0	0	1	0	0	0	14660	304	11	3	1258	3	SLC47A1	17	19470436	Missense_Mutation	SNP	A	TCGA-CJ-4899-01A-01D-1462-08		19470436	61724774	24	29312											
SPAG5	10615	hgsc.bcm.edu;ucsc.edu	37	17	26919284	26919284	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	-	26919284	T	-	26919284	7	5	507	1	0	1	0	1	0	0	0	0	14994	1606	56	0	2691	0	SPAG5	17	26919284	Frame_Shift_Del	DEL	T	TCGA-CJ-4899-01A-01D-1462-08	7448848	26919284	54275926	25	29313											
OR4D1	26689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56232813	56232813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	G	56232813	A	G	56232813	3	3	507	1	0	0	0	0	1	0	0	0	11060	188	7	3	301	3	OR4D1	17	56232813	Missense_Mutation	SNP	A	TCGA-CJ-4899-01A-01D-1462-08	29313529	56232813	24962397	26	29314											
JMJD6	23210	broad.mit.edu;hgsc.bcm.edu	37	17	74721938	74721938	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	74721938	C	T	74721938	5	4	507	1	0	0	0	0	0	0	1	0	7960	695	24	2	1143	2	JMJD6	17	74721938	Splice_Site	SNP	C	TCGA-CJ-4899-01A-01D-1462-08	18489125	74721938	6473272	27	29315											
ESCO1	114799	hgsc.bcm.edu;ucsc.edu	37	18	19154328	19154329	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	19154329	-	T	19154328	7	5	507	1	0	1	1	0	0	0	0	0	5250	564	20	0	2081	0	ESCO1	18	19154328	Frame_Shift_Ins	INS	-	TCGA-CJ-4899-01A-01D-1462-08		19154328	58922920	28	29316											
CDH2	1000	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	25583110	25583110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	25583110	C	T	25583110	3	4	507	1	0	0	0	0	1	0	0	0	3107	797	28	2	1889	2	CDH2	18	25583110	Missense_Mutation	SNP	C	TCGA-CJ-4899-01A-01D-1462-08	6428782	25583110	52494138	29	29317											
PAF1	54623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39880362	39880362	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	C	39880362	G	C	39880362	3	2	507	1	0	0	0	0	1	0	0	0	11390	1368	48	4	1429	4	PAF1	19	39880362	Missense_Mutation	SNP	G	TCGA-CJ-4899-01A-01D-1462-08		39880362	19248621	30	29318											
AKT1S1	84335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50374936	50374936	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	A	50374936	G	A	50374936	2	1	507	1	0	0	0	0	0	0	0	1	479	1335	47	2		2	AKT1S1	19	50374936	Silent	SNP	G	TCGA-CJ-4899-01A-01D-1462-08	10494574	50374936	8754047	31	29319											
C20orf186	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31690805	31690805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	A	31690805	C	A	31690805	3	1	507	1	0	0	0	0	1	0	0	0	2100	535	19	4	1715	4	C20orf186	20	31690805	Missense_Mutation	SNP	C	TCGA-CJ-4899-01A-01D-1462-08		31690805	31334715	32	29320											
CHD6	84181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	40033900	40033900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	40033900	C	T	40033900	3	4	507	1	0	0	0	0	1	0	0	0	3331	623	22	2	670	2	CHD6	20	40033900	Missense_Mutation	SNP	C	TCGA-CJ-4899-01A-01D-1462-08	8343095	40033900	22991620	33	29321											
NHP2L1	4809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	42071041	42071041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	T	42071041	C	T	42071041	3	4	507	1	0	0	0	0	1	0	0	0	10417	507	18	2	107	2	NHP2L1	22	42071041	Missense_Mutation	SNP	C	TCGA-CJ-4899-01A-01D-1462-08		42071041	9233525	34	29322											
IDS	3423	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	148577954	148577954	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4899-01A-01D-1462-08	TCGA-CJ-4899-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	943ca428-39f6-4ad2-8ca5-220628a6b5bb	2fa78925-1a3a-488c-944f-9ecab35bcd5b	-	148577954	T	-	148577954	7	5	507	1	0	1	0	1	0	0	0	0	7510	1435	50	0	896	0	IDS	23	148577954	Frame_Shift_Del	DEL	T	TCGA-CJ-4899-01A-01D-1462-08		148577954	6692606	35	29323											
C1orf63	57035	broad.mit.edu	37	1	25572997	25572997	+	Missense_Mutation	SNP	C	C	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	25572997	C	G	25572997	3	3	508	1	0	0	0	0	1	0	0	0	2055	913	32	4	430	4	C1orf63	1	25572997	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08		25572997	223677624	1	29324											
C1orf141	400757	broad.mit.edu	37	1	67561005	67561005	+	Silent	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	67561005	C	T	67561005	2	4	508	1	0	0	0	0	0	0	0	1	2003	709	25	2		2	C1orf141	1	67561005	Silent	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	41988008	67561005	181689616	2	29325											
VCAM1	7412	broad.mit.edu	37	1	101186182	101186182	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	101186182	C	T	101186182	3	4	508	1	0	0	0	0	1	0	0	0	17149	536	19	1	221	1	VCAM1	1	101186182	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	33625177	101186182	148064439	3	29326											
REG4	83998	broad.mit.edu	37	1	120342348	120342348	+	Splice_Site	SNP	C	C	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	120342348	C	G	120342348	5	3	508	1	0	0	0	0	0	0	1	0	13227	695	24	4	185	4	REG4	1	120342348	Splice_Site	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	19156166	120342348	128908273	4	29327											
SPTA1	6708	broad.mit.edu	37	1	158614129	158614129	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	158614129	G	T	158614129	3	4	508	1	0	0	0	0	1	0	0	0	15128	991	35	4	3099	4	SPTA1	1	158614129	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	38271781	158614129	90636492	5	29328											
VANGL2	57216	broad.mit.edu	37	1	160394984	160394984	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	160394984	C	T	160394984	3	4	508	1	0	0	0	0	1	0	0	0	17132	478	17	2	1408	2	VANGL2	1	160394984	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	1780855	160394984	88855637	6	29329											
ZBTB41	360023	broad.mit.edu	37	1	197169167	197169167	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	197169167	G	T	197169167	4	4	508	1	0	0	0	0	0	1	0	0	17555	1294	45	4	2332	4	ZBTB41	1	197169167	Nonsense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	36774183	197169167	52081454	7	29330											
ATP2B4	493	broad.mit.edu	37	1	203677096	203677096	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	203677096	G	A	203677096	3	1	508	1	0	0	0	0	1	0	0	0	1142	1087	38	1	1455	1	ATP2B4	1	203677096	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	6507929	203677096	45573525	8	29331											
MYT1L	23040	broad.mit.edu	37	2	1926644	1926644	+	Silent	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	1926644	G	A	1926644	2	1	508	1	0	0	0	0	0	0	0	1	10114	1140	40	1		1	MYT1L	2	1926644	Silent	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		1926644	241272729	9	29332											
MGAT5	4249	broad.mit.edu	37	2	135076308	135076308	+	Missense_Mutation	SNP	G	G	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	135076308	G	C	135076308	3	2	508	1	0	0	0	0	1	0	0	0	9555	1291	45	4	585	4	MGAT5	2	135076308	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	133149664	135076308	108123065	10	29333											
TTN	7273	broad.mit.edu	37	2	179552876	179552876	+	Missense_Mutation	SNP	C	C	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	179552876	C	G	179552876	3	3	508	1	0	0	0	0	1	0	0	0	16747	913	32	4	72200	4	TTN	2	179552876	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	44476568	179552876	63646497	11	29334											
VHL	7428	broad.mit.edu	37	3	10191480	10191480	+	Missense_Mutation	SNP	T	T	A	rs121913346		TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	10191480	T	A	10191480	3	1	508	1	0	0	0	0	1	0	0	0	17174	1580	55	5	483	5	VHL	3	10191480	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08		10191480	187830950	12	29335											
MORC1	27136	broad.mit.edu	37	3	108682370	108682370	+	Missense_Mutation	SNP	A	A	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	108682370	A	G	108682370	3	3	508	1	0	0	0	0	1	0	0	0	9708	449	16	3	272	3	MORC1	3	108682370	Missense_Mutation	SNP	A	TCGA-CJ-4900-01A-01D-1462-08	98490890	108682370	89340060	13	29336											
PIK3CB	5291	broad.mit.edu	37	3	138374292	138374292	+	Missense_Mutation	SNP	T	T	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	138374292	T	C	138374292	3	2	508	1	0	0	0	0	1	0	0	0	11921	1783	62	3	62	3	PIK3CB	3	138374292	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08	29691922	138374292	59648138	14	29337											
SPATA16	83893	broad.mit.edu	37	3	172835175	172835175	+	Missense_Mutation	SNP	G	G	A	rs141435669		TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	172835175	G	A	172835175	3	1	508	1	0	0	0	0	1	0	0	0	15013	1232	43	2	1402	2	SPATA16	3	172835175	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	34460883	172835175	25187255	15	29338											
CCDC112	153733	broad.mit.edu	37	5	114620527	114620527	+	Missense_Mutation	SNP	T	T	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	114620527	T	C	114620527	3	2	508	1	0	0	0	0	1	0	0	0	2751	1763	61	3	1429	3	CCDC112	5	114620527	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08		114620527	66294733	16	29339											
DDX46	9879	broad.mit.edu	37	5	134113264	134113264	+	Splice_Site	SNP	A	A	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	134113264	A	T	134113264	5	4	508	1	0	0	0	0	0	0	1	0	4366	347	12	5	636	5	DDX46	5	134113264	Splice_Site	SNP	A	TCGA-CJ-4900-01A-01D-1462-08	19492737	134113264	46801996	17	29340											
PCDHGB1	56104	broad.mit.edu	37	5	140731748	140731748	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	140731748	G	A	140731748	3	1	508	1	0	0	0	0	1	0	0	0	11569	1087	38	1	1923	1	PCDHGB1	5	140731748	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	6618484	140731748	40183512	18	29341											
ABCF1	23	broad.mit.edu	37	6	30554452	30554452	+	Missense_Mutation	SNP	T	T	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	30554452	T	A	30554452	3	1	508	1	0	0	0	0	1	0	0	0	65	1635	57	5	2073	5	ABCF1	6	30554452	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08		30554452	140560615	19	29342											
CFB	629	broad.mit.edu	37	6	31914008	31914008	+	Missense_Mutation	SNP	A	A	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	31914008	A	G	31914008	3	3	508	1	0	0	0	0	1	0	0	0	3280	130	5	3	12	3	CFB	6	31914008	Missense_Mutation	SNP	A	TCGA-CJ-4900-01A-01D-1462-08	1359556	31914008	139201059	20	29343											
NOTCH4	4855	broad.mit.edu	37	6	32164148	32164148	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	32164148	G	A	32164148	3	1	508	1	0	0	0	0	1	0	0	0	10558	1116	39	1	768	1	NOTCH4	6	32164148	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	250140	32164148	138950919	21	29344											
ITPR3	3710	broad.mit.edu	37	6	33630395	33630395	+	Missense_Mutation	SNP	A	A	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	33630395	A	G	33630395	3	3	508	1	0	0	0	0	1	0	0	0	7929	391	14	3	832	3	ITPR3	6	33630395	Missense_Mutation	SNP	A	TCGA-CJ-4900-01A-01D-1462-08	1466247	33630395	137484672	22	29345											
ZNF318	24149	broad.mit.edu	37	6	43333135	43333135	+	Nonsense_Mutation	SNP	A	A	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	43333135	A	C	43333135	4	2	508	1	0	0	0	0	0	1	0	0	17848	372	13	5	6432	5	ZNF318	6	43333135	Nonsense_Mutation	SNP	A	TCGA-CJ-4900-01A-01D-1462-08	9702740	43333135	127781932	23	29346											
HCRTR2	3062	broad.mit.edu	37	6	55119936	55119936	+	Silent	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	55119936	C	T	55119936	2	4	508	1	0	0	0	0	0	0	0	1	7009	639	23	1		1	HCRTR2	6	55119936	Silent	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	11786801	55119936	115995131	24	29347											
MYO6	4646	broad.mit.edu	37	6	76599869	76599869	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	76599869	G	T	76599869	3	4	508	1	0	0	0	0	1	0	0	0	10088	962	34	4	2852	4	MYO6	6	76599869	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	21479933	76599869	94515198	25	29348											
NKAIN2	154215	broad.mit.edu	37	6	124979412	124979412	+	Silent	SNP	G	G	A	rs142736368	byFrequency	TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	124979412	G	A	124979412	2	1	508	1	0	0	0	0	0	0	0	1	10443	1132	40	1		1	NKAIN2	6	124979412	Silent	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	48379543	124979412	46135655	26	29349											
NAMPT	10135	broad.mit.edu	37	7	105902044	105902044	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	105902044	G	T	105902044	3	4	508	1	0	0	0	0	1	0	0	0	10156	1261	44	4	412	4	NAMPT	7	105902044	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		105902044	53236619	27	29350											
KCND2	3751	broad.mit.edu	37	7	119914985	119914985	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	119914985	G	A	119914985	3	1	508	1	0	0	0	0	1	0	0	0	8026	1087	38	1	301	1	KCND2	7	119914985	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	14012941	119914985	39223678	28	29351											
SPAM1	6677	broad.mit.edu	37	7	123599958	123599958	+	Missense_Mutation	SNP	C	C	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	123599958	C	A	123599958	3	1	508	1	0	0	0	0	1	0	0	0	14999	564	20	4	1475	4	SPAM1	7	123599958	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	3684973	123599958	35538705	29	29352											
RBM28	55131	broad.mit.edu	37	7	127963594	127963594	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	127963594	C	T	127963594	3	4	508	1	0	0	0	0	1	0	0	0	13141	739	26	2	917	2	RBM28	7	127963594	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	4363636	127963594	31175069	30	29353											
MGAM	8972	broad.mit.edu	37	7	141756645	141756645	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	141756645	C	T	141756645	3	4	508	1	0	0	0	0	1	0	0	0	9548	623	22	2	3710	2	MGAM	7	141756645	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	13793051	141756645	17382018	31	29354											
WRN	7486	broad.mit.edu	37	8	30948045	30948045	+	Missense_Mutation	SNP	A	A	G	rs150148567	byFrequency	TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	30948045	A	G	30948045	3	3	508	1	0	0	0	0	1	0	0	0	17414	43	2	3	1767	3	WRN	8	30948045	Missense_Mutation	SNP	A	TCGA-CJ-4900-01A-01D-1462-08		30948045	115415977	32	29355											
ANKRD46	157567	broad.mit.edu	37	8	101541853	101541853	+	Missense_Mutation	SNP	T	T	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	101541853	T	G	101541853	3	3	508	1	0	0	0	0	1	0	0	0	674	1435	50	5	489	5	ANKRD46	8	101541853	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08	70593808	101541853	44822169	33	29356											
ELAVL2	1993	broad.mit.edu	37	9	23704955	23704955	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	23704955	G	A	23704955	3	1	508	1	0	0	0	0	1	0	0	0	5052	1145	40	1	647	1	ELAVL2	9	23704955	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		23704955	117508476	34	29357											
SMU1	55234	broad.mit.edu	37	9	33073796	33073796	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	33073796	C	T	33073796	3	4	508	1	0	0	0	0	1	0	0	0	14830	768	27	1	1550	1	SMU1	9	33073796	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	9368841	33073796	108139635	35	29358											
TLE1	7088	broad.mit.edu	37	9	84267197	84267197	+	Missense_Mutation	SNP	G	G	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	84267197	G	C	84267197	3	2	508	1	0	0	0	0	1	0	0	0	15950	1386	48	4	2068	4	TLE1	9	84267197	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	51193401	84267197	56946234	36	29359											
C1QL3	389941	broad.mit.edu	37	10	16562527	16562527	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	16562527	G	A	16562527	3	1	508	1	0	0	0	0	1	0	0	0	1962	1087	38	1	237	1	C1QL3	10	16562527	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		16562527	118972220	37	29360											
KIF5B	3799	broad.mit.edu	37	10	32320187	32320187	+	Missense_Mutation	SNP	C	C	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	32320187	C	G	32320187	3	3	508	1	0	0	0	0	1	0	0	0	8313	622	22	4	1544	4	KIF5B	10	32320187	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	15757660	32320187	103214560	38	29361											
UNC5B	219699	broad.mit.edu	37	10	73053294	73053294	+	Missense_Mutation	SNP	T	T	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	73053294	T	A	73053294	3	1	508	1	0	0	0	0	1	0	0	0	17004	1780	62	5	1951	5	UNC5B	10	73053294	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08	40733107	73053294	62481453	39	29362											
CPXM2	119587	broad.mit.edu	37	10	125516758	125516758	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	125516758	G	A	125516758	3	1	508	1	0	0	0	0	1	0	0	0	3840	1115	39	1	394	1	CPXM2	10	125516758	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	52463464	125516758	10017989	40	29363											
OR5P2	120065	broad.mit.edu	37	11	7818172	7818172	+	Silent	SNP	G	G	A	rs140285767		TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	7818172	G	A	7818172	2	1	508	1	0	0	0	0	0	0	0	1	11185	1045	37	1		1	OR5P2	11	7818172	Silent	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		7818172	127188344	41	29364											
SPON1	10418	broad.mit.edu	37	11	14063144	14063144	+	RNA	SNP	C	C	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	14063144	C	A	14063144	1	1	508	0	1	0	0	0	0	0	0	0	15094	507	18	4		4	SPON1	11	14063144	RNA	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	6244972	14063144	120943372	42	29365											
ATM	472	broad.mit.edu	37	11	108173586	108173586	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	-	108173586	G	-	108173586	7	5	508	1	0	1	0	1	0	0	0	0	1109	943	33	0	5464	0	ATM	11	108173586	Frame_Shift_Del	DEL	G	TCGA-CJ-4900-01A-01D-1462-08	94110442	108173586	26832930	43	29366											
HSPB2	3316	broad.mit.edu	37	11	111784509	111784509	+	Missense_Mutation	SNP	C	C	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	111784509	C	G	111784509	3	3	508	1	0	0	0	0	1	0	0	0	7427	507	18	4	445	4	HSPB2	11	111784509	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	3610923	111784509	23222007	44	29367											
OR8D2	283160	broad.mit.edu	37	11	124189591	124189591	+	Missense_Mutation	SNP	A	A	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	124189591	A	C	124189591	3	2	508	1	0	0	0	0	1	0	0	0	11239	246	9	5	435	5	OR8D2	11	124189591	Missense_Mutation	SNP	A	TCGA-CJ-4900-01A-01D-1462-08	12405082	124189591	10816925	45	29368											
TMEM45B	120224	broad.mit.edu	37	11	129722478	129722478	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	129722478	G	A	129722478	3	1	508	1	0	0	0	0	1	0	0	0	16182	1116	39	1	103	1	TMEM45B	11	129722478	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	5532887	129722478	5284038	46	29369											
CACNA2D4	93589	broad.mit.edu	37	12	2016629	2016629	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	2016629	G	A	2016629	3	1	508	1	0	0	0	0	1	0	0	0	2553	1029	36	2	2787	2	CACNA2D4	12	2016629	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		2016629	131835266	47	29370											
KRT71	112802	broad.mit.edu	37	12	52939363	52939363	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	52939363	G	A	52939363	3	1	508	1	0	0	0	0	1	0	0	0	8491	1174	41	2	233	2	KRT71	12	52939363	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	50922734	52939363	80912532	48	29371											
ZC3H10	84872	broad.mit.edu	37	12	56515094	56515094	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	56515094	C	T	56515094	3	4	508	1	0	0	0	0	1	0	0	0	17571	759	27	1	750	1	ZC3H10	12	56515094	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	3575731	56515094	77336801	49	29372											
MGAT4C	25834	broad.mit.edu	37	12	86373526	86373526	+	Silent	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	86373526	C	T	86373526	2	4	508	1	0	0	0	0	0	0	0	1	9554	680	24	2		2	MGAT4C	12	86373526	Silent	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	29858432	86373526	47478369	50	29373											
USP44	84101	broad.mit.edu	37	12	95911974	95911974	+	Missense_Mutation	SNP	G	G	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	95911974	G	C	95911974	3	2	508	1	0	0	0	0	1	0	0	0	17087	1174	41	4	47	4	USP44	12	95911974	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	9538448	95911974	37939921	51	29374											
MTUS2	23281	broad.mit.edu	37	13	29599533	29599533	+	Missense_Mutation	SNP	A	A	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	29599533	A	G	29599533	3	3	508	1	0	0	0	0	1	0	0	0	9973	275	10	3	730	3	MTUS2	13	29599533	Missense_Mutation	SNP	A	TCGA-CJ-4900-01A-01D-1462-08		29599533	85570345	52	29375											
FRY	10129	broad.mit.edu	37	13	32813993	32813993	+	Missense_Mutation	SNP	T	T	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	32813993	T	C	32813993	3	2	508	1	0	0	0	0	1	0	0	0	6070	1821	63	3	6844	3	FRY	13	32813993	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08	3214460	32813993	82355885	53	29376											
BTBD7	55727	broad.mit.edu	37	14	93762381	93762381	+	Missense_Mutation	SNP	G	G	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	93762381	G	C	93762381	3	2	508	1	0	0	0	0	1	0	0	0	1548	942	33	4	3496	4	BTBD7	14	93762381	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		93762381	13587159	54	29377											
TRPM1	4308	broad.mit.edu	37	15	31355463	31355463	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	31355463	C	T	31355463	3	4	508	1	0	0	0	0	1	0	0	0	16597	536	19	1	4138	1	TRPM1	15	31355463	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08		31355463	71175929	55	29378											
PGBD4	161779	broad.mit.edu	37	15	34396086	34396086	+	Missense_Mutation	SNP	T	T	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	34396086	T	C	34396086	3	2	508	1	0	0	0	0	1	0	0	0	11790	1638	57	3	1356	3	PGBD4	15	34396086	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08	3040623	34396086	68135306	56	29379											
PPL	5493	broad.mit.edu	37	16	4935161	4935161	+	Silent	SNP	G	G	A	rs148525665		TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	4935161	G	A	4935161	2	1	508	1	0	0	0	0	0	0	0	1	12344	1136	40	1		1	PPL	16	4935161	Silent	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		4935161	85419592	57	29380											
TRADD	8717	broad.mit.edu	37	16	67190518	67190518	+	Missense_Mutation	SNP	A	A	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	67190518	A	G	67190518	3	3	508	1	0	0	0	0	1	0	0	0	16448	449	16	3	908	3	TRADD	16	67190518	Missense_Mutation	SNP	A	TCGA-CJ-4900-01A-01D-1462-08	62255357	67190518	23164235	58	29381											
RABEP1	9135	broad.mit.edu	37	17	5266228	5266228	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	5266228	C	T	5266228	3	4	508	1	0	0	0	0	1	0	0	0	12974	565	20	2	1623	2	RABEP1	17	5266228	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08		5266228	75928982	59	29382											
MYH4	4622	broad.mit.edu	37	17	10369732	10369732	+	Splice_Site	SNP	G	G	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	10369732	G	C	10369732	5	2	508	1	0	0	0	0	0	0	1	0	10044	1043	36	4	5761	4	MYH4	17	10369732	Splice_Site	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	5103504	10369732	70825478	60	29383											
PLEKHM1	9842	broad.mit.edu	37	17	43531340	43531340	+	Missense_Mutation	SNP	C	C	G			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	G	43531340	C	G	43531340	3	3	508	1	0	0	0	0	1	0	0	0	12087	680	24	4	1316	4	PLEKHM1	17	43531340	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	33161608	43531340	37663870	61	29384											
SPATA20	64847	broad.mit.edu	37	17	48632612	48632612	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	48632612	G	A	48632612	3	1	508	1	0	0	0	0	1	0	0	0	15018	1145	40	1	2239	1	SPATA20	17	48632612	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	5101272	48632612	32562598	62	29385											
MBP	4155	broad.mit.edu	37	18	74692366	74692366	+	Missense_Mutation	SNP	C	C	T	rs145141322	by1000genomes	TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	74692366	C	T	74692366	3	4	508	1	0	0	0	0	1	0	0	0	9366	667	23	1		1	MBP	18	74692366	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08		74692366	3384882	63	29386											
ATP8B3	148229	broad.mit.edu	37	19	1787180	1787180	+	Silent	SNP	C	C	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	1787180	C	A	1787180	2	1	508	1	0	0	0	0	0	0	0	1	1196	465	17	4		4	ATP8B3	19	1787180	Silent	SNP	C	TCGA-CJ-4900-01A-01D-1462-08		1787180	57341803	64	29387											
DOCK6	57572	broad.mit.edu	37	19	11319498	11319498	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	11319498	G	A	11319498	3	1	508	1	0	0	0	0	1	0	0	0	4693	1294	45	2	1231	2	DOCK6	19	11319498	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	9532318	11319498	47809485	65	29388											
ZSWIM4	65249	broad.mit.edu	37	19	13941546	13941546	+	Silent	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	13941546	C	T	13941546	2	4	508	1	0	0	0	0	0	0	0	1	18255	726	26	2		2	ZSWIM4	19	13941546	Silent	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	2622048	13941546	45187437	66	29389											
KIRREL2	84063	broad.mit.edu	37	19	36351226	36351226	+	Missense_Mutation	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	36351226	C	T	36351226	3	4	508	1	0	0	0	0	1	0	0	0	8332	893	31	1	723	1	KIRREL2	19	36351226	Missense_Mutation	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	22409680	36351226	22777757	67	29390											
MEGF8	1954	broad.mit.edu	37	19	42879720	42879720	+	Missense_Mutation	SNP	T	T	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	42879720	T	C	42879720	3	2	508	1	0	0	0	0	1	0	0	0	9470	1551	54	3	7292	3	MEGF8	19	42879720	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08	6528494	42879720	16249263	68	29391											
ZNF45	7596	broad.mit.edu	37	19	44418057	44418057	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	44418057	G	A	44418057	4	1	508	1	0	0	0	0	0	1	0	0	17933	1299	45	2	521	2	ZNF45	19	44418057	Nonsense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	1538337	44418057	14710926	69	29392											
RALGAPA2	57186	broad.mit.edu	37	20	20621392	20621392	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	20621392	G	T	20621392	3	4	508	1	0	0	0	0	1	0	0	0	13027	1000	35	4	5254	4	RALGAPA2	20	20621392	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		20621392	42404128	70	29393											
EEF1A2	1917	broad.mit.edu	37	20	62128979	62128979	+	Silent	SNP	C	C	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	62128979	C	T	62128979	2	4	508	1	0	0	0	0	0	0	0	1	4926	639	23	1		1	EEF1A2	20	62128979	Silent	SNP	C	TCGA-CJ-4900-01A-01D-1462-08	41507587	62128979	896541	71	29394											
B3GALT5	10317	broad.mit.edu	37	21	41033355	41033355	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	41033355	G	A	41033355	3	1	508	1	0	0	0	0	1	0	0	0	1250	1116	39	1	871	1	B3GALT5	21	41033355	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		41033355	7096540	72	29395											
HORMAD2	150280	broad.mit.edu	37	22	30517740	30517740	+	Missense_Mutation	SNP	A	A	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	30517740	A	C	30517740	3	2	508	1	0	0	0	0	1	0	0	0	7294	101	4	5	560	5	HORMAD2	22	30517740	Missense_Mutation	SNP	A	TCGA-CJ-4900-01A-01D-1462-08		30517740	20786826	73	29396											
MPPED1	758	broad.mit.edu	37	22	43831006	43831006	+	Missense_Mutation	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	43831006	G	A	43831006	3	1	508	1	0	0	0	0	1	0	0	0	9748	1145	40	1	283	1	MPPED1	22	43831006	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	13313266	43831006	7473560	74	29397											
BCOR	54880	broad.mit.edu	37	X	39922969	39922969	+	Missense_Mutation	SNP	G	G	T			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	T	39922969	G	T	39922969	3	4	508	1	0	0	0	0	1	0	0	0	1386	1174	41	4	1560	4	BCOR	23	39922969	Missense_Mutation	SNP	G	TCGA-CJ-4900-01A-01D-1462-08		39922969	115347591	75	29398											
HUWE1	10075	broad.mit.edu	37	X	53595734	53595734	+	Missense_Mutation	SNP	T	T	C			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	C	53595734	T	C	53595734	3	2	508	1	0	0	0	0	1	0	0	0	7468	1464	51	3	6643	3	HUWE1	23	53595734	Missense_Mutation	SNP	T	TCGA-CJ-4900-01A-01D-1462-08	13672765	53595734	101674826	76	29399											
PJA1	64219	broad.mit.edu	37	X	68382878	68382878	+	Silent	SNP	G	G	A			TCGA-CJ-4900-01A-01D-1462-08	TCGA-CJ-4900-11A-01D-1462-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3af8e4fc-79c3-448d-893c-6a25e7d41f48	731f468f-0c14-45d2-aae2-7155e8bbd5e1	A	68382878	G	A	68382878	2	1	508	1	0	0	0	0	0	0	0	1	11968	1194	42	2		2	PJA1	23	68382878	Silent	SNP	G	TCGA-CJ-4900-01A-01D-1462-08	14787144	68382878	86887682	77	29400											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16203144	16203144	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	-	16203144	C	-	16203144	7	5	509	1	0	1	0	1	0	0	0	0	15050	816	29	0	862	0	SPEN	1	16203144	Frame_Shift_Del	DEL	C	TCGA-CJ-4901-01A-01D-1429-08		16203144	233047477	1	29401											
EPHB2	2048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	23191471	23191471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	23191471	G	A	23191471	3	1	509	1	0	0	0	0	1	0	0	0	5177	1145	40	1	1087	1	EPHB2	1	23191471	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	6988327	23191471	226059150	2	29402											
WDR63	126820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	85564293	85564293	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	G	85564293	A	G	85564293	2	3	509	1	0	0	0	0	0	0	0	1	17326	262	10	3		3	WDR63	1	85564293	Silent	SNP	A	TCGA-CJ-4901-01A-01D-1429-08	62372822	85564293	163686328	3	29403											
OPTC	26254	broad.mit.edu;hgsc.bcm.edu	37	1	203472874	203472874	+	Splice_Site	SNP	G	G	C	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	C	203472874	G	C	203472874	5	2	509	1	0	0	0	0	0	0	1	0	10895	1275	44	4		4	OPTC	1	203472874	Splice_Site	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	117908581	203472874	45777747	4	29404											
NRXN1	9378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	50779973	50779973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	50779973	A	T	50779973	3	4	509	1	0	0	0	0	1	0	0	0	10672	449	16	5	3335	5	NRXN1	2	50779973	Missense_Mutation	SNP	A	TCGA-CJ-4901-01A-01D-1429-08		50779973	192419400	5	29405											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179436709	179436709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	179436709	G	A	179436709	3	1	509	1	0	0	0	0	1	0	0	0	16747	1203	42	2	33977	2	TTN	2	179436709	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	128656736	179436709	63762664	6	29406											
CADM2	253559	broad.mit.edu;hgsc.bcm.edu	37	3	85961624	85961624	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	85961624	A	T	85961624	3	4	509	1	0	0	0	0	1	0	0	0	2569	217	8	5	693	5	CADM2	3	85961624	Missense_Mutation	SNP	A	TCGA-CJ-4901-01A-01D-1429-08		85961624	112060806	7	29407											
ATP6V1A	523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113499964	113499964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	113499964	G	T	113499964	3	4	509	1	0	0	0	0	1	0	0	0	1177	1339	47	4	156	4	ATP6V1A	3	113499964	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	27538340	113499964	84522466	8	29408											
TRPC1	7220	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	142509938	142509938	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	142509938	A	T	142509938	3	4	509	1	0	0	0	0	1	0	0	0	16590	188	7	5	1299	5	TRPC1	3	142509938	Missense_Mutation	SNP	A	TCGA-CJ-4901-01A-01D-1429-08	29009974	142509938	55512492	9	29409											
SERPINI2	5276	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	167184993	167184993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	167184993	C	A	167184993	3	1	509	1	0	0	0	0	1	0	0	0	14132	710	25	4	917	4	SERPINI2	3	167184993	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	24675055	167184993	30837437	10	29410											
PSMD2	5708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184019697	184019697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	184019697	G	A	184019697	3	1	509	1	0	0	0	0	1	0	0	0	12708	1116	39	1	560	1	PSMD2	3	184019697	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	16834704	184019697	14002733	11	29411											
C4orf40	401137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71024217	71024217	+	Missense_Mutation	SNP	G	G	T	rs149016682	by1000genomes;alternate_allele	TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	71024217	G	T	71024217	3	4	509	1	0	0	0	0	1	0	0	0	2271	1174	41	4	258	4	C4orf40	4	71024217	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08		71024217	120130059	12	29412											
C4orf36	132989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87808950	87808950	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	G	87808950	C	G	87808950	3	3	509	1	0	0	0	0	1	0	0	0	2268	681	24	4	40	4	C4orf36	4	87808950	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	16784733	87808950	103345326	13	29413											
ADH1B	125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	100232771	100232771	+	Missense_Mutation	SNP	C	C	T	rs140683864		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	100232771	C	T	100232771	3	4	509	1	0	0	0	0	1	0	0	0	308	536	19	1	268	1	ADH1B	4	100232771	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	12423821	100232771	90921505	14	29414											
C4orf21	55345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	113540750	113540750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	C	113540750	T	C	113540750	3	2	509	1	0	0	0	0	1	0	0	0	2256	1406	49	3	5958	3	C4orf21	4	113540750	Missense_Mutation	SNP	T	TCGA-CJ-4901-01A-01D-1429-08	13307979	113540750	77613526	15	29415											
RAPGEF2	9693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	160275160	160275160	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	160275160	A	T	160275160	3	4	509	1	0	0	0	0	1	0	0	0	13057	159	6	5	4216	5	RAPGEF2	4	160275160	Missense_Mutation	SNP	A	TCGA-CJ-4901-01A-01D-1429-08	46734410	160275160	30879116	16	29416											
ESM1	11082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	54277917	54277917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	54277917	C	T	54277917	3	4	509	1	0	0	0	0	1	0	0	0	5254	739	26	2	203	2	ESM1	5	54277917	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08		54277917	126637343	17	29417											
PCDHB16	57717	broad.mit.edu	37	5	140564017	140564017	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	140564017	T	T	140564017	3	4	509	1	0	0	0	0	1	0	0	0	11548	1000	35	4	1885	4	PCDHB16	5	140564017	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	86286100	140564017	40351243	18	29418											
DOCK4	9732	broad.mit.edu;hgsc.bcm.edu	37	7	111517174	111517174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	111517174	G	T	111517174	3	4	509	1	0	0	0	0	1	0	0	0	4691	1165	41	4	4388	4	DOCK4	7	111517174	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08		111517174	47621489	19	29419											
ZNF800	168850	broad.mit.edu;hgsc.bcm.edu	37	7	127014965	127014965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	127014965	G	T	127014965	3	4	509	1	0	0	0	0	1	0	0	0	18181	1319	46	4	1577	4	ZNF800	7	127014965	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	15497791	127014965	32123698	20	29420											
CTSB	1508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	11710851	11710851	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	G	11710851	T	G	11710851	3	3	509	1	0	0	0	0	1	0	0	0	4032	1493	52	5	942	5	CTSB	8	11710851	Missense_Mutation	SNP	T	TCGA-CJ-4901-01A-01D-1429-08		11710851	134653171	21	29421											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	113301593	113301593	+	Splice_Site	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	113301593	C	A	113301593	5	1	509	1	0	0	0	0	0	0	1	0	3948	521	18	4	2034	4	CSMD3	8	113301593	Splice_Site	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	101590742	113301593	33062429	22	29422											
FAM83A	84985	broad.mit.edu;hgsc.bcm.edu	37	8	124204198	124204198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	124204198	C	A	124204198	3	1	509	1	0	0	0	0	1	0	0	0	5640	477	17	4	642	4	FAM83A	8	124204198	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	10902605	124204198	22159824	23	29423											
TLN1	7094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35698342	35698342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	35698342	G	A	35698342	3	1	509	1	0	0	0	0	1	0	0	0	15959	1059	37	1	288	1	TLN1	9	35698342	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08		35698342	105515089	24	29424											
HNRNPK	3190	broad.mit.edu;hgsc.bcm.edu	37	9	86586212	86586212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	86586212	T	A	86586212	3	1	509	1	0	0	0	0	1	0	0	0	7276	1490	52	5	381	5	HNRNPK	9	86586212	Missense_Mutation	SNP	T	TCGA-CJ-4901-01A-01D-1429-08	50887870	86586212	54627219	25	29425											
C9orf5	0	hgsc.bcm.edu;ucsc.edu	37	9	111800395	111800395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	111800395	C	A	111800395	3	1	509	1	0	0	0	0	1	0	0	0	2488	623	22	4	529	4	C9orf5	9	111800395	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	25214183	111800395	29413036	26	29426											
COL27A1	85301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	116999978	116999978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	116999978	G	A	116999978	3	1	509	1	0	0	0	0	1	0	0	0	3687	1116	39	1	2784	1	COL27A1	9	116999978	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	5199583	116999978	24213453	27	29427											
ECHDC3	79746	hgsc.bcm.edu;ucsc.edu	37	10	11805257	11805257	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	-	11805257	T	-	11805257	7	5	509	1	0	1	0	1	0	0	0	0	4897	1493	52	0	644	0	ECHDC3	10	11805257	Frame_Shift_Del	DEL	T	TCGA-CJ-4901-01A-01D-1429-08		11805257	123729490	28	29428											
MYO3A	53904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	26417412	26417412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	C	26417412	T	C	26417412	3	2	509	1	0	0	0	0	1	0	0	0	10083	1493	52	3	2277	3	MYO3A	10	26417412	Missense_Mutation	SNP	T	TCGA-CJ-4901-01A-01D-1429-08	14612155	26417412	109117335	29	29429											
GDF10	2662	broad.mit.edu	37	10	48429220	48429220	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	48429220	A	A	48429220	2	1	509	1	0	0	0	0	0	0	0	1	6318	1103	39	1		1	GDF10	10	48429220	Silent	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	22011808	48429220	87105527	30	29430											
CRTAC1	55118	hgsc.bcm.edu;ucsc.edu	37	10	99771036	99771037	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	-	99771037	GA	-	99771036	7	5	509	1	0	1	0	1	0	0	0	0	3898	1174	41	0	1958	0	CRTAC1	10	99771036	Frame_Shift_Del	DEL	GA	TCGA-CJ-4901-01A-01D-1429-08	51341816	99771036	35763711	31	29431											
OR51B4	79339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5323105	5323105	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	G	5323105	C	G	5323105	2	3	509	1	0	0	0	0	0	0	0	1	11097	842	30	4		4	OR51B4	11	5323105	Silent	SNP	C	TCGA-CJ-4901-01A-01D-1429-08		5323105	129683411	32	29432											
CTR9	9646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	10785191	10785191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	G	10785191	A	G	10785191	3	3	509	1	0	0	0	0	1	0	0	0	4026	260	9	3	993	3	CTR9	11	10785191	Missense_Mutation	SNP	A	TCGA-CJ-4901-01A-01D-1429-08	5462086	10785191	124221325	33	29433											
NPAS4	266743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66189623	66189623	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	66189623	T	A	66189623	3	1	509	1	0	0	0	0	1	0	0	0	10572	1551	54	5	214	5	NPAS4	11	66189623	Missense_Mutation	SNP	T	TCGA-CJ-4901-01A-01D-1429-08	55404432	66189623	68816893	34	29434											
P2RY2	5029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	72945224	72945224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	72945224	C	A	72945224	3	1	509	1	0	0	0	0	1	0	0	0	11359	623	22	4	22	4	P2RY2	11	72945224	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	6755601	72945224	62061292	35	29435											
ETNK1	55500	hgsc.bcm.edu	37	12	22778110	22778110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	22778110	C	A	22778110	3	1	509	1	0	0	0	0	1	0	0	0	5275	652	23	4	15	4	ETNK1	12	22778110	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08		22778110	111073785	36	29436											
TSPAN19	144448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	85421761	85421761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	G	85421761	C	G	85421761	3	3	509	1	0	0	0	0	1	0	0	0	16655	825	29	4	590	4	TSPAN19	12	85421761	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	62643651	85421761	48430134	37	29437											
ANKS1B	56899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100206021	100206021	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	C	100206021	G	C	100206021	3	2	509	1	0	0	0	0	1	0	0	0	689	1000	35	4	3846	4	ANKS1B	12	100206021	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	14784260	100206021	33645874	38	29438											
ABCC4	10257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	95862961	95862961	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	95862961	C	A	95862961	2	1	509	1	0	0	0	0	0	0	0	1	55	813	29	4		4	ABCC4	13	95862961	Silent	SNP	C	TCGA-CJ-4901-01A-01D-1429-08		95862961	19306917	39	29439											
OR4K14	122740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	20483200	20483200	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	20483200	A	T	20483200	2	4	509	1	0	0	0	0	0	0	0	1	11076	175	7	5		5	OR4K14	14	20483200	Silent	SNP	A	TCGA-CJ-4901-01A-01D-1429-08		20483200	86866340	40	29440											
ACOT2	10965	hgsc.bcm.edu;ucsc.edu	37	14	74036108	74036108	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	-	74036108	A	-	74036108	7	5	509	1	0	1	0	1	0	0	0	0	152	188	7	0	166	0	ACOT2	14	74036108	Frame_Shift_Del	DEL	A	TCGA-CJ-4901-01A-01D-1429-08	53552908	74036108	33313432	41	29441											
RGS11	8786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	321411	321411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	321411	C	T	321411	3	4	509	1	0	0	0	0	1	0	0	0	13307	536	19	1	695	1	RGS11	16	321411	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08		321411	90033342	42	29442											
SYT17	51760	hgsc.bcm.edu;ucsc.edu	37	16	19195340	19195340	+	Silent	SNP	G	G	A	rs75241864	bycluster;byfrequency;by1000genomes	TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	19195340	G	A	19195340	2	1	509	1	0	0	0	0	0	0	0	1	15485	1306	46	2		2	SYT17	16	19195340	Silent	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	18873929	19195340	71159413	43	29443											
CAMKK1	84254	broad.mit.edu;hgsc.bcm.edu	37	17	3786739	3786739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	3786739	C	A	3786739	3	1	509	1	0	0	0	0	1	0	0	0	2608	796	28	4	1189	4	CAMKK1	17	3786739	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08		3786739	77408471	44	29444											
ZNF594	84622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5086795	5086795	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	G	5086795	C	G	5086795	3	3	509	1	0	0	0	0	1	0	0	0	18036	913	32	4	1670	4	ZNF594	17	5086795	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	1300056	5086795	76108415	45	29445											
SPATA20	64847	broad.mit.edu;hgsc.bcm.edu	37	17	48629019	48629019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	48629019	C	T	48629019	3	4	509	1	0	0	0	0	1	0	0	0	15018	681	24	2	1774	2	SPATA20	17	48629019	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	43542224	48629019	32566191	46	29446											
ANKFN1	162282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	54403670	54403670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	54403670	C	A	54403670	3	1	509	1	0	0	0	0	1	0	0	0	625	479	17	4	161	4	ANKFN1	17	54403670	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08	5774651	54403670	26791540	47	29447											
EPB41L3	23136	broad.mit.edu;hgsc.bcm.edu	37	18	5410602	5410602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	5410602	G	A	5410602	3	1	509	1	0	0	0	0	1	0	0	0	5156	1145	40	1	1215	1	EPB41L3	18	5410602	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08		5410602	72666646	48	29448											
IMPA2	3613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	11999109	11999109	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	11999109	A	T	11999109	2	4	509	1	0	0	0	0	0	0	0	1	7730	175	7	5		5	IMPA2	18	11999109	Silent	SNP	A	TCGA-CJ-4901-01A-01D-1429-08	6588507	11999109	66078139	49	29449											
CTAGE1	64693	broad.mit.edu;hgsc.bcm.edu	37	18	19996969	19996969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	19996969	G	A	19996969	3	1	509	1	0	0	0	0	1	0	0	0	3994	1059	37	1	1435	1	CTAGE1	18	19996969	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	7997860	19996969	58080279	50	29450											
FARSA	2193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	13041068	13041068	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	G	13041068	C	G	13041068	3	3	509	1	0	0	0	0	1	0	0	0	5686	893	31	4	1094	4	FARSA	19	13041068	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08		13041068	46087915	51	29451											
ZNF99	7652	hgsc.bcm.edu	37	19	22939560	22939560	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	G	22939560	T	G	22939560	3	3	509	1	0	0	0	0	1	0	0	0	18216	1812	63	5	505	5	ZNF99	19	22939560	Missense_Mutation	SNP	T	TCGA-CJ-4901-01A-01D-1429-08	9898492	22939560	36189423	52	29452											
PRR12	57479	broad.mit.edu;hgsc.bcm.edu	37	19	50099582	50099582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	50099582	G	A	50099582	3	1	509	1	0	0	0	0	1	0	0	0	12594	1059	37	1	2004	1	PRR12	19	50099582	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	27160022	50099582	9029401	53	29453											
NF2	4771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30067836	30067836	+	Nonsense_Mutation	SNP	C	C	T	rs74315499	bycluster	TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	30067836	C	T	30067836	4	4	509	1	0	0	0	0	0	1	0	0	10364	876	31	1	1063	1	NF2	22	30067836	Nonsense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08		30067836	21236730	54	29454											
TRIOBP	11078	broad.mit.edu;hgsc.bcm.edu	37	22	38097437	38097437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	T	38097437	G	T	38097437	3	4	509	1	0	0	0	0	1	0	0	0	16565	1087	38	4	67	4	TRIOBP	22	38097437	Missense_Mutation	SNP	G	TCGA-CJ-4901-01A-01D-1429-08	8029601	38097437	13207129	55	29455											
GEMIN8	54960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	14038611	14038611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4901-01A-01D-1429-08	TCGA-CJ-4901-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8a8f3ff-0514-4bca-be75-16ad58eb9e72	4f61a793-26fd-43ec-92cf-91ba74757d00	A	14038611	C	A	14038611	3	1	509	1	0	0	0	0	1	0	0	0	6341	507	18	4	678	4	GEMIN8	23	14038611	Missense_Mutation	SNP	C	TCGA-CJ-4901-01A-01D-1429-08		14038611	141231949	56	29456											
AGRN	375790	hgsc.bcm.edu;ucsc.edu	37	1	979247	979251	+	Frame_Shift_Del	DEL	GCAGG	GCAGG	-	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	GCAGG	GCAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	-	979251	GCAGG	-	979247	7	5	510	1	0	1	0	1	0	0	0	0	397	1087	38	0	1881	0	AGRN	1	979247	Frame_Shift_Del	DEL	GCAGG	TCGA-CJ-4902-01A-01D-1429-08		979247	248271374	1	29457											
RPS6KA1	6195	broad.mit.edu;hgsc.bcm.edu	37	1	26887302	26887302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	26887302	G	A	26887302	3	1	510	1	0	0	0	0	1	0	0	0	13663	1087	38	1	1498	1	RPS6KA1	1	26887302	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	25908055	26887302	222363319	2	29458											
LRRC7	57554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	70504369	70504369	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	70504369	G	A	70504369	2	1	510	1	0	0	0	0	0	0	0	1	9027	1103	39	1		1	LRRC7	1	70504369	Silent	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	43617067	70504369	178746252	3	29459											
GJA8	2703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	147380712	147380712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	147380712	G	T	147380712	3	4	510	1	0	0	0	0	1	0	0	0	6412	1368	48	4	632	4	GJA8	1	147380712	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	76876343	147380712	101869909	4	29460											
ATP1A4	480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160144415	160144415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	160144415	C	T	160144415	3	4	510	1	0	0	0	0	1	0	0	0	1131	768	27	1	2247	1	ATP1A4	1	160144415	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	12763703	160144415	89106206	5	29461											
DHX9	1660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	182841497	182841497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	182841497	G	A	182841497	3	1	510	1	0	0	0	0	1	0	0	0	4518	1145	40	1	1637	1	DHX9	1	182841497	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	22697082	182841497	66409124	6	29462											
FAM5C	339479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	190068181	190068181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	190068181	G	A	190068181	3	1	510	1	0	0	0	0	1	0	0	0	5601	1145	40	1	1036	1	FAM5C	1	190068181	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	7226684	190068181	59182440	7	29463											
APOB	338	hgsc.bcm.edu;ucsc.edu	37	2	21229016	21229016	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	-	21229016	C	-	21229016	7	5	510	1	0	1	0	1	0	0	0	0	785	739	26	0	2983	0	APOB	2	21229016	Frame_Shift_Del	DEL	C	TCGA-CJ-4902-01A-01D-1429-08		21229016	221970357	8	29464											
TP53I3	9540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24307098	24307098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	24307098	C	A	24307098	3	1	510	1	0	0	0	0	1	0	0	0	16399	680	24	4	919	4	TP53I3	2	24307098	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	3078082	24307098	218892275	9	29465	362	3									
TP53I3	9540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24307099	24307099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	C	24307099	T	C	24307099	3	2	510	1	0	0	0	0	1	0	0	0	16399	1609	56	3	920	3	TP53I3	2	24307099	Missense_Mutation	SNP	T	TCGA-CJ-4902-01A-01D-1429-08	1	24307099	218892274	10	29466	362	3									
TP53I3	9540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24307100	24307100	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	24307100	T	A	24307100	4	1	510	1	0	0	0	0	0	1	0	0	16399	1792	62	5	921	5	TP53I3	2	24307100	Nonsense_Mutation	SNP	T	TCGA-CJ-4902-01A-01D-1429-08	1	24307100	218892273	11	29467	362	3									
KHK	3795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27322321	27322321	+	Silent	SNP	C	C	T	rs142428157	byfrequency	TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	27322321	C	T	27322321	2	4	510	1	0	0	0	0	0	0	0	1	8156	755	27	1		1	KHK	2	27322321	Silent	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	3015221	27322321	215877052	12	29468											
VPS54	51542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	64161068	64161068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	64161068	G	A	64161068	3	1	510	1	0	0	0	0	1	0	0	0	17228	1294	45	2	1503	2	VPS54	2	64161068	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	36838747	64161068	179038305	13	29469											
MEIS1	4211	broad.mit.edu	37	2	66667009	66667009	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	66667009	T	T	66667009	4	4	510	1	0	0	0	0	0	1	0	0	9474	1291	45	4	284	4	MEIS1	2	66667009	Nonsense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	2505941	66667009	176532364	14	29470											
FOXD4L1	200350	broad.mit.edu	37	2	114257620	114257620	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	114257620	T	T	114257620	3	4	510	1	0	0	0	0	1	0	0	0	6007	710	25	2	789	2	FOXD4L1	2	114257620	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	47590611	114257620	128941753	15	29471											
KCNJ3	3760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	155555522	155555522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	C	155555522	A	C	155555522	3	2	510	1	0	0	0	0	1	0	0	0	8059	131	5	5	237	5	KCNJ3	2	155555522	Missense_Mutation	SNP	A	TCGA-CJ-4902-01A-01D-1429-08	41297902	155555522	87643851	16	29472											
TTC30B	150737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	178415573	178415573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	C	178415573	T	C	178415573	3	2	510	1	0	0	0	0	1	0	0	0	16711	1464	51	3	82	3	TTC30B	2	178415573	Missense_Mutation	SNP	T	TCGA-CJ-4902-01A-01D-1429-08	22860051	178415573	64783800	17	29473											
ARHGAP31	57514	broad.mit.edu;ucsc.edu	37	3	119132967	119132967	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	119132967	A	A	119132967	3	1	510	1	0	0	0	0	1	0	0	0	880	1783	62	5	2237	5	ARHGAP31	3	119132967	Missense_Mutation	SNP	T	TCGA-CJ-4902-01A-01D-1429-08		119132967	78889463	18	29474											
CCDC48	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128758645	128758645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	128758645	C	T	128758645	3	4	510	1	0	0	0	0	1	0	0	0	2821	739	26	2	1781	2	CCDC48	3	128758645	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	9625678	128758645	69263785	19	29475											
ZBTB38	253461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	141161785	141161785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	141161785	G	T	141161785	3	4	510	1	0	0	0	0	1	0	0	0	17551	1281	45	4	557	4	ZBTB38	3	141161785	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	12403140	141161785	56860645	20	29476											
FRAS1	80144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	79458343	79458343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	G	79458343	T	G	79458343	3	3	510	1	0	0	0	0	1	0	0	0	6049	1493	52	5	11648	5	FRAS1	4	79458343	Missense_Mutation	SNP	T	TCGA-CJ-4902-01A-01D-1429-08		79458343	111695933	21	29477											
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127685089	127685089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	127685089	C	T	127685089	3	4	510	1	0	0	0	0	1	0	0	0	5710	710	25	2	5971	2	FBN2	5	127685089	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08		127685089	53230171	22	29478											
KIF20A	10112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137522869	137522869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	C	137522869	T	C	137522869	3	2	510	1	0	0	0	0	1	0	0	0	8293	1638	57	3	2510	3	KIF20A	5	137522869	Missense_Mutation	SNP	T	TCGA-CJ-4902-01A-01D-1429-08	9837780	137522869	43392391	23	29479											
TXNDC5	81567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7904955	7904955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	G	7904955	A	G	7904955	3	3	510	1	0	0	0	0	1	0	0	0	16811	173	6	3	1069	3	TXNDC5	6	7904955	Missense_Mutation	SNP	A	TCGA-CJ-4902-01A-01D-1429-08		7904955	163210112	24	29480											
GCM1	8521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	52993017	52993017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	52993017	C	T	52993017	3	4	510	1	0	0	0	0	1	0	0	0	6304	478	17	2	16	2	GCM1	6	52993017	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	45088062	52993017	118122050	25	29481											
GRM1	2911	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	146720058	146720058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	146720058	G	A	146720058	3	1	510	1	0	0	0	0	1	0	0	0	6803	1116	39	1	1909	1	GRM1	6	146720058	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	93727041	146720058	24395009	26	29482											
GUSB	2990	broad.mit.edu;ucsc.edu	37	7	65439618	65439618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	65439618	A	A	65439618	3	1	510	1	0	0	0	0	1	0	0	0	6909	971	34	2	840	2	GUSB	7	65439618	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08		65439618	93699045	27	29483											
HGSNAT	138050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	43002122	43002122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	43002122	G	T	43002122	3	4	510	1	0	0	0	0	1	0	0	0	7095	933	33	4	156	4	HGSNAT	8	43002122	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08		43002122	103361900	28	29484											
TRPM6	140803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	77416960	77416960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	77416960	C	A	77416960	3	1	510	1	0	0	0	0	1	0	0	0	16602	912	32	4	4301	4	TRPM6	9	77416960	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08		77416960	63796471	29	29485											
PKN3	29941	broad.mit.edu	37	9	131469089	131469089	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	131469089	A	A	131469089	3	1	510	1	0	0	0	0	1	0	0	0	11988	1232	43	2	523	2	PKN3	9	131469089	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	54052129	131469089	9744342	30	29486											
POLR3A	11128	hgsc.bcm.edu;ucsc.edu	37	10	79764626	79764626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	79764626	C	A	79764626	3	1	510	1	0	0	0	0	1	0	0	0	12235	594	21	4	2141	4	POLR3A	10	79764626	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08		79764626	55770121	31	29487											
FAM190B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	86130886	86130886	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	86130886	A	T	86130886	2	4	510	1	0	0	0	0	0	0	0	1	5526	204	8	5		5	FAM190B	10	86130886	Silent	SNP	A	TCGA-CJ-4902-01A-01D-1429-08	6366260	86130886	49403861	32	29488											
GRID1	2894	broad.mit.edu;hgsc.bcm.edu	37	10	87407096	87407096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	87407096	C	T	87407096	3	4	510	1	0	0	0	0	1	0	0	0	6778	710	25	2	989	2	GRID1	10	87407096	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	1276210	87407096	48127651	33	29489											
KCNK18	338567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	118957020	118957020	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	118957020	C	T	118957020	2	4	510	1	0	0	0	0	0	0	0	1	8072	610	22	2		2	KCNK18	10	118957020	Silent	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	31549924	118957020	16577727	34	29490											
MUC5B	727897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1264193	1264193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	G	1264193	C	G	1264193	3	3	510	1	0	0	0	0	1	0	0	0	9986	507	18	4	6214	4	MUC5B	11	1264193	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08		1264193	133742323	35	29491											
AHNAK	79026	broad.mit.edu;hgsc.bcm.edu	37	11	62295513	62295513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	62295513	A	T	62295513	3	4	510	1	0	0	0	0	1	0	0	0	414	69	3	5	11416	5	AHNAK	11	62295513	Missense_Mutation	SNP	A	TCGA-CJ-4902-01A-01D-1429-08	61031320	62295513	72711003	36	29492											
USP35	57558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	77919916	77919916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	77919916	C	A	77919916	3	1	510	1	0	0	0	0	1	0	0	0	17078	855	30	4	1529	4	USP35	11	77919916	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	15624403	77919916	57086600	37	29493											
AMICA1	120425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118074350	118074350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	118074350	G	T	118074350	3	4	510	1	0	0	0	0	1	0	0	0	574	1029	36	4	639	4	AMICA1	11	118074350	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	40154434	118074350	16932166	38	29494											
HMBS	3145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118963206	118963206	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	118963206	C	A	118963206	2	1	510	1	0	0	0	0	0	0	0	1	7226	874	31	4		4	HMBS	11	118963206	Silent	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	888856	118963206	16043310	39	29495											
VWF	7450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6204730	6204730	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	6204730	A	T	6204730	3	4	510	1	0	0	0	0	1	0	0	0	17258	362	13	5	8076	5	VWF	12	6204730	Missense_Mutation	SNP	A	TCGA-CJ-4902-01A-01D-1429-08		6204730	127647165	40	29496											
A2M	2	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9230391	9230391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	9230391	G	A	9230391	3	1	510	1	0	0	0	0	1	0	0	0	4	1319	46	2	1286	2	A2M	12	9230391	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	3025661	9230391	124621504	41	29497			1	58		2	2	15	G		3.029989e-05
A2M	2	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9230405	9230405	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	9230405	G	A	9230405	2	1	510	1	0	0	0	0	0	0	0	1	4	932	33	2		2	A2M	12	9230405	Silent	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	14	9230405	124621490	42	29498			1	58		2	2	15	G		3.029989e-05
P2RX2	22953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133196058	133196058	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	133196058	G	T	133196058	4	4	510	1	0	0	0	0	0	1	0	0	11347	943	33	4	213	4	P2RX2	12	133196058	Nonsense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	123965653	133196058	655837	43	29499											
STYX	6815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	53213187	53213187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	53213187	T	A	53213187	3	1	510	1	0	0	0	0	1	0	0	0	15372	1464	51	5	144	5	STYX	14	53213187	Missense_Mutation	SNP	T	TCGA-CJ-4902-01A-01D-1429-08		53213187	54136353	44	29500											
RTL1	388015	broad.mit.edu;ucsc.edu	37	14	101347402	101347402	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	101347402	A	A	101347402	3	1	510	1	0	0	0	0	1	0	0	0	13737	1145	40	1	356	1	RTL1	14	101347402	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	48134215	101347402	6002138	45	29501											
TUBGCP5	114791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	22846911	22846911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	C	22846911	G	C	22846911	3	2	510	1	0	0	0	0	1	0	0	0	16781	1223	43	4	816	4	TUBGCP5	15	22846911	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08		22846911	79684481	46	29502											
MTMR10	54893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	31266655	31266655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	31266655	G	T	31266655	3	4	510	1	0	0	0	0	1	0	0	0	9946	1136	40	4	2045	4	MTMR10	15	31266655	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	8419744	31266655	71264737	47	29503											
RYR3	6263	broad.mit.edu;ucsc.edu	37	15	34118467	34118467	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	34118467	T	T	34118467	3	4	510	1	0	0	0	0	1	0	0	0	13783	536	19	1	11491	1	RYR3	15	34118467	Missense_Mutation	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	2851812	34118467	68412925	48	29504											
AP4E1	23431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51293254	51293254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	G	51293254	A	G	51293254	3	3	510	1	0	0	0	0	1	0	0	0	752	247	9	3	3205	3	AP4E1	15	51293254	Missense_Mutation	SNP	A	TCGA-CJ-4902-01A-01D-1429-08	17174787	51293254	51238138	49	29505											
AKAP13	11214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	86123644	86123644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	G	86123644	A	G	86123644	3	3	510	1	0	0	0	0	1	0	0	0	449	275	10	3	2367	3	AKAP13	15	86123644	Missense_Mutation	SNP	A	TCGA-CJ-4902-01A-01D-1429-08	34830390	86123644	16407748	50	29506											
ANPEP	290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90349608	90349608	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	C	90349608	T	C	90349608	2	2	510	1	0	0	0	0	0	0	0	1	710	1606	56	3		3	ANPEP	15	90349608	Silent	SNP	T	TCGA-CJ-4902-01A-01D-1429-08	4225964	90349608	12181784	51	29507											
PRSS21	10942	broad.mit.edu	37	16	2867459	2867459	+	Splice_Site	SNP	T	G	G	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	G	2867459	G	G	2867459	5	3	510	1	0	0	0	0	0	0	1	0	12628	1652	57	5	99	5	PRSS21	16	2867459	Splice_Site	SNP	T	TCGA-CJ-4902-01A-01D-1429-08		2867459	87487294	52	29508											
MYH11	4629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15841458	15841458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	C	15841458	G	C	15841458	3	2	510	1	0	0	0	0	1	0	0	0	10038	1357	47	4	3665	4	MYH11	16	15841458	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	12973999	15841458	74513295	53	29509											
ZNF646	9726	broad.mit.edu;hgsc.bcm.edu	37	16	31089296	31089296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	31089296	G	A	31089296	3	1	510	1	0	0	0	0	1	0	0	0	18074	942	33	2	1653	2	ZNF646	16	31089296	Missense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	15247838	31089296	59265457	54	29510											
ABCC11	85320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	48244895	48244895	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	48244895	G	A	48244895	2	1	510	1	0	0	0	0	0	0	0	1	51	1190	42	2		2	ABCC11	16	48244895	Silent	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	17155599	48244895	42109858	55	29511											
KIAA0182	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	85696693	85696693	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	85696693	C	T	85696693	2	4	510	1	0	0	0	0	0	0	0	1	8166	668	24	2		2	KIAA0182	16	85696693	Silent	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	37451798	85696693	4658060	56	29512											
NUP88	4927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5322725	5322725	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	5322725	G	T	5322725	4	4	510	1	0	0	0	0	0	1	0	0	10778	1190	42	4	2047	4	NUP88	17	5322725	Nonsense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08		5322725	75872485	57	29513											
KRT19	3880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39680198	39680198	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	39680198	G	A	39680198	4	1	510	1	0	0	0	0	0	1	0	0	8463	1357	47	2	206	2	KRT19	17	39680198	Nonsense_Mutation	SNP	G	TCGA-CJ-4902-01A-01D-1429-08	34357473	39680198	41515012	58	29514											
FADS6	283985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72888762	72888762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	72888762	A	T	72888762	3	4	510	1	0	0	0	0	1	0	0	0	5372	333	12	5	827	5	FADS6	17	72888762	Missense_Mutation	SNP	A	TCGA-CJ-4902-01A-01D-1429-08	33208564	72888762	8306448	59	29515											
SLC38A10	124565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	79257257	79257257	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	79257257	C	A	79257257	2	1	510	1	0	0	0	0	0	0	0	1	14615	813	29	4		4	SLC38A10	17	79257257	Silent	SNP	C	TCGA-CJ-4902-01A-01D-1429-08	6368495	79257257	1937953	60	29516											
ALPK2	115701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	56205106	56205106	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	56205106	A	T	56205106	2	4	510	1	0	0	0	0	0	0	0	1	545	175	7	5		5	ALPK2	18	56205106	Silent	SNP	A	TCGA-CJ-4902-01A-01D-1429-08		56205106	21872142	61	29517											
CAPN12	147968	hgsc.bcm.edu;ucsc.edu	37	19	39229287	39229288	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	-	39229288	CT	-	39229287	7	5	510	1	0	1	0	1	0	0	0	0	2627	579	20	0	1492	0	CAPN12	19	39229287	Frame_Shift_Del	DEL	CT	TCGA-CJ-4902-01A-01D-1429-08		39229287	19899696	62	29518											
FAM113A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2819279	2819279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	G	2819279	A	G	2819279	3	3	510	1	0	0	0	0	1	0	0	0	5405	304	11	3	823	3	FAM113A	20	2819279	Missense_Mutation	SNP	A	TCGA-CJ-4902-01A-01D-1429-08		2819279	60206241	63	29519											
MACROD2	140733	ucsc.edu	37	20	15948281	15948281	+	Intron	SNP	T	T	C	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	C	15948281	T	C	15948281	1	2	510	0	1	0	0	0	0	0	0	0	9153	1740	60	3		3	MACROD2	20	15948281	Intron	SNP	T	TCGA-CJ-4902-01A-01D-1429-08	13129002	15948281	47077239	64	29520											
ZNFX1	57169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47887117	47887117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	A	47887117	T	A	47887117	3	1	510	1	0	0	0	0	1	0	0	0	18217	1638	57	5	4572	5	ZNFX1	20	47887117	Missense_Mutation	SNP	T	TCGA-CJ-4902-01A-01D-1429-08	31938836	47887117	15138403	65	29521											
PCK1	5105	broad.mit.edu;ucsc.edu	37	20	56138156	56138156	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	G	56138156	G	G	56138156	3	3	510	1	0	0	0	0	1	0	0	0	11588	1435	50	5	697	5	PCK1	20	56138156	Missense_Mutation	SNP	T	TCGA-CJ-4902-01A-01D-1429-08	8251039	56138156	6887364	66	29522											
KDELR3	11015	hgsc.bcm.edu;ucsc.edu	37	22	38877232	38877235	+	Frame_Shift_Del	DEL	TCTA	TCTA	-	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	TCTA	TCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	-	38877235	TCTA	-	38877232	7	5	510	1	0	1	0	1	0	0	0	0	8128	1551	54	0	381	0	KDELR3	22	38877232	Frame_Shift_Del	DEL	TCTA	TCGA-CJ-4902-01A-01D-1429-08		38877232	12427334	67	29523											
ARSD	414	hgsc.bcm.edu	37	X	2835999	2836007	+	In_Frame_Del	DEL	CCACGCCGG	CCACGCCGG	-	rs113556864		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	CCACGCCGG	CCACGCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	-	2836007	CCACGCCGG	-	2835999	7	5	510	1	0	1	0	1	0	0	0	0	989	623	22	0	1249	0	ARSD	23	2835999	In_Frame_Del	DEL	CCACGCCGG	TCGA-CJ-4902-01A-01D-1429-08		2835999	152434561	68	29524											
ZDHHC9	51114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	128975882	128975882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4902-01A-01D-1429-08	TCGA-CJ-4902-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3ef9ea62-85c4-4261-af23-ecb86f192cdf	fc22c32f-f803-4803-b98d-bc1a2e693144	T	128975882	A	T	128975882	3	4	510	1	0	0	0	0	1	0	0	0	17634	217	8	5	1090	5	ZDHHC9	23	128975882	Missense_Mutation	SNP	A	TCGA-CJ-4902-01A-01D-1429-08	126139883	128975882	26294678	69	29525											
AK2	204	hgsc.bcm.edu;ucsc.edu	37	1	33476404	33476404	+	RNA	SNP	T	T	G	rs76230073	bycluster	TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	G	33476404	T	G	33476404	1	3	511	0	1	0	0	0	0	0	0	0	440	1740	60	5		5	AK2	1	33476404	RNA	SNP	T	TCGA-CJ-4903-01A-01D-1429-08		33476404	215774217	1	29526											
HIVEP3	59269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	42049239	42049239	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	42049239	G	A	42049239	2	1	511	1	0	0	0	0	0	0	0	1	7195	1136	40	1		1	HIVEP3	1	42049239	Silent	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	8572835	42049239	207201382	2	29527											
F11R	50848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160969694	160969694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	160969694	C	A	160969694	3	1	511	1	0	0	0	0	1	0	0	0	5340	826	29	4	253	4	F11R	1	160969694	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	118920455	160969694	88280927	3	29528											
URB2	9816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	229773890	229773890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	229773890	C	T	229773890	3	4	511	1	0	0	0	0	1	0	0	0	17037	710	25	2	3540	2	URB2	1	229773890	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	68804196	229773890	19476731	4	29529											
PCNXL2	80003	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	233150461	233150461	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	233150461	G	T	233150461	4	4	511	1	0	0	0	0	0	1	0	0	11599	1311	46	4	1539	4	PCNXL2	1	233150461	Nonsense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	3376571	233150461	16100160	5	29530											
RAPGEF4	11069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	173894949	173894949	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	173894949	C	T	173894949	2	4	511	1	0	0	0	0	0	0	0	1	13059	535	19	1		1	RAPGEF4	2	173894949	Silent	SNP	C	TCGA-CJ-4903-01A-01D-1429-08		173894949	69304424	6	29531											
RBM45	129831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	178990777	178990777	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	G	178990777	C	G	178990777	2	3	511	1	0	0	0	0	0	0	0	1	13152	639	23	4		4	RBM45	2	178990777	Silent	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	5095828	178990777	64208596	7	29532											
RAPH1	65059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	204305222	204305222	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	204305222	T	A	204305222	2	1	511	1	0	0	0	0	0	0	0	1	13063	1567	55	5		5	RAPH1	2	204305222	Silent	SNP	T	TCGA-CJ-4903-01A-01D-1429-08	25314445	204305222	38894151	8	29533											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10188309	10188309	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	C	10188309	C	C	10188309	3	2	511	1	0	0	0	0	1	0	0	0	17174	1435	50	3	458	3	VHL	3	10188309	Missense_Mutation	SNP	T	TCGA-CJ-4903-01A-01D-1429-08		10188309	187834121	9	29534											
WDR48	57599	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	39108073	39108073	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	39108073	A	T	39108073	2	4	511	1	0	0	0	0	0	0	0	1	17313	436	16	5		5	WDR48	3	39108073	Silent	SNP	A	TCGA-CJ-4903-01A-01D-1429-08	28919764	39108073	158914357	10	29535											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643360	52643360	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	52643360	C	A	52643360	4	1	511	1	0	0	0	0	0	1	0	0	11498	835	29	4	2424	4	PBRM1	3	52643360	Nonsense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	13535287	52643360	145379070	11	29536											
LAMP3	27074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	182871518	182871518	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	G	182871518	A	G	182871518	2	3	511	1	0	0	0	0	0	0	0	1	8626	389	14	3		3	LAMP3	3	182871518	Silent	SNP	A	TCGA-CJ-4903-01A-01D-1429-08	130228158	182871518	15150912	12	29537											
D4S234E	0	broad.mit.edu;hgsc.bcm.edu	37	4	4411393	4411393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	4411393	G	A	4411393	3	1	511	1	0	0	0	0	1	0	0	0	4216	1058	37	1	350	1	D4S234E	4	4411393	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08		4411393	186742883	13	29538											
SMARCA5	8467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	144465930	144465930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	144465930	G	A	144465930	3	1	511	1	0	0	0	0	1	0	0	0	14784	942	33	2	2279	2	SMARCA5	4	144465930	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	140054537	144465930	46688346	14	29539											
TLR2	7097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	154625344	154625344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	154625344	C	A	154625344	3	1	511	1	0	0	0	0	1	0	0	0	15963	739	26	4	1287	4	TLR2	4	154625344	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	10159414	154625344	36528932	15	29540											
SLC6A19	340024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	1217053	1217053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	C	1217053	T	C	1217053	3	2	511	1	0	0	0	0	1	0	0	0	14695	1551	54	3	1196	3	SLC6A19	5	1217053	Missense_Mutation	SNP	T	TCGA-CJ-4903-01A-01D-1429-08		1217053	179698207	16	29541											
CDH18	1016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	19612594	19612594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	19612594	C	T	19612594	3	4	511	1	0	0	0	0	1	0	0	0	3105	565	20	2	1644	2	CDH18	5	19612594	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	18395541	19612594	161302666	17	29542											
MAP1B	4131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	71495395	71495395	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	71495395	G	A	71495395	2	1	511	1	0	0	0	0	0	0	0	1	9235	1020	36	2		2	MAP1B	5	71495395	Silent	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	51882801	71495395	109419865	18	29543											
PCSK1	5122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	95728885	95728885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	C	95728885	G	C	95728885	3	2	511	1	0	0	0	0	1	0	0	0	11607	1368	48	4	183	4	PCSK1	5	95728885	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	24233490	95728885	85186375	19	29544											
DST	667	broad.mit.edu;hgsc.bcm.edu	37	6	56472759	56472759	+	Intron	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	56472759	C	T	56472759	1	4	511	0	1	0	0	0	0	0	0	0	4785	899	31	1		1	DST	6	56472759	Intron	SNP	C	TCGA-CJ-4903-01A-01D-1429-08		56472759	114642308	20	29545											
KLHL32	114792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	97562309	97562309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	97562309	G	T	97562309	3	4	511	1	0	0	0	0	1	0	0	0	8393	1183	41	4	1300	4	KLHL32	6	97562309	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	41089550	97562309	73552758	21	29546											
SAMD9	54809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92733297	92733297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	G	92733297	A	G	92733297	3	3	511	1	0	0	0	0	1	0	0	0	13839	14	1	3	2659	3	SAMD9	7	92733297	Missense_Mutation	SNP	A	TCGA-CJ-4903-01A-01D-1429-08		92733297	66405366	22	29547											
PLXNA4	91584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	132192713	132192713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	132192713	C	T	132192713	3	4	511	1	0	0	0	0	1	0	0	0	12129	507	18	2	5382	2	PLXNA4	7	132192713	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	39459416	132192713	26945950	23	29548											
KEL	3792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	142649604	142649604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	142649604	G	A	142649604	3	1	511	1	0	0	0	0	1	0	0	0	8149	1261	44	2	1043	2	KEL	7	142649604	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	10456891	142649604	16489059	24	29549											
KCNH2	3757	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150675001	150675001	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	150675001	T	A	150675001	3	1	511	1	0	0	0	0	1	0	0	0	8039	1435	50	5	3919	5	KCNH2	7	150675001	Missense_Mutation	SNP	T	TCGA-CJ-4903-01A-01D-1429-08	8025397	150675001	8463662	25	29550											
CYC1	1537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145151520	145151520	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	145151520	C	T	145151520	2	4	511	1	0	0	0	0	0	0	0	1	4137	813	29	2		2	CYC1	8	145151520	Silent	SNP	C	TCGA-CJ-4903-01A-01D-1429-08		145151520	1212502	26	29551											
PPP2R4	5524	broad.mit.edu;ucsc.edu	37	9	131909727	131909727	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	131909727	A	A	131909727	3	1	511	1	0	0	0	0	1	0	0	0	12401	681	24	4	1103	4	PPP2R4	9	131909727	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08		131909727	9303704	27	29552											
ABI1	10006	broad.mit.edu	37	10	27054165	27054165	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	27054165	T	T	27054165	3	4	511	1	0	0	0	0	1	0	0	0	88	1203	42	4	748	4	ABI1	10	27054165	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08		27054165	108480582	28	29553											
NRG3	10718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	84744979	84744979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	84744979	G	A	84744979	3	1	511	1	0	0	0	0	1	0	0	0	10656	1000	35	2	1987	2	NRG3	10	84744979	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	57690814	84744979	50789768	29	29554											
MKI67	4288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	129906582	129906582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	129906582	C	A	129906582	3	1	511	1	0	0	0	0	1	0	0	0	9605	710	25	4	6260	4	MKI67	10	129906582	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	45161603	129906582	5628165	30	29555											
FAM160A2	84067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6233079	6233079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	6233079	G	A	6233079	3	1	511	1	0	0	0	0	1	0	0	0	5473	1174	41	2	346	2	FAM160A2	11	6233079	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08		6233079	128773437	31	29556											
NAV2	89797	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	19735259	19735259	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	19735259	C	A	19735259	2	1	511	1	0	0	0	0	0	0	0	1	10191	871	31	4		4	NAV2	11	19735259	Silent	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	13502180	19735259	115271257	32	29557											
AMBRA1	55626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	46563577	46563577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	G	46563577	A	G	46563577	3	3	511	1	0	0	0	0	1	0	0	0	565	275	10	3	1954	3	AMBRA1	11	46563577	Missense_Mutation	SNP	A	TCGA-CJ-4903-01A-01D-1429-08	26828318	46563577	88442939	33	29558											
FAT3	120114	hgsc.bcm.edu;ucsc.edu	37	11	92257814	92257814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	92257814	G	A	92257814	3	1	511	1	0	0	0	0	1	0	0	0	5698	1087	38	1	3313	1	FAT3	11	92257814	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	45694237	92257814	42748702	34	29559											
C1QTNF9	338872	broad.mit.edu;hgsc.bcm.edu	37	13	24893010	24893010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	24893010	G	T	24893010	3	4	511	1	0	0	0	0	1	0	0	0	1972	1174	41	4	227	4	C1QTNF9	13	24893010	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08		24893010	90276868	35	29560											
PDS5B	23047	hgsc.bcm.edu;ucsc.edu	37	13	33232396	33232396	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	-	33232396	A	-	33232396	7	5	511	1	0	1	0	1	0	0	0	0	11699	117	5	0	343	0	PDS5B	13	33232396	Frame_Shift_Del	DEL	A	TCGA-CJ-4903-01A-01D-1429-08	8339386	33232396	81937482	36	29561											
CTSG	1511	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	25043508	25043508	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	25043508	G	A	25043508	2	1	511	1	0	0	0	0	0	0	0	1	4037	1140	40	1		1	CTSG	14	25043508	Silent	SNP	G	TCGA-CJ-4903-01A-01D-1429-08		25043508	82306032	37	29562											
AKAP6	9472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	33293956	33293956	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	33293956	C	T	33293956	4	4	511	1	0	0	0	0	0	1	0	0	455	528	19	1	6983	1	AKAP6	14	33293956	Nonsense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	8250448	33293956	74055584	38	29563											
NRXN3	9369	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	79434650	79434650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	C	79434650	G	C	79434650	3	2	511	1	0	0	0	0	1	0	0	0	10674	1319	46	4	2018	4	NRXN3	14	79434650	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	46140694	79434650	27914890	39	29564											
CYP46A1	10858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	100191787	100191787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	100191787	C	A	100191787	3	1	511	1	0	0	0	0	1	0	0	0	4184	506	18	4	1286	4	CYP46A1	14	100191787	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	20757137	100191787	7157753	40	29565											
VPS13C	54832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	62257054	62257055	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	-	62257055	AG	-	62257054	7	5	511	1	0	1	0	1	0	0	0	0	17203	72	3	0	8451	0	VPS13C	15	62257054	Frame_Shift_Del	DEL	AG	TCGA-CJ-4903-01A-01D-1429-08		62257054	40274338	41	29566											
EDC3	80153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	74925269	74925269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	74925269	A	T	74925269	3	4	511	1	0	0	0	0	1	0	0	0	4909	159	6	5	319	5	EDC3	15	74925269	Missense_Mutation	SNP	A	TCGA-CJ-4903-01A-01D-1429-08	12668215	74925269	27606123	42	29567											
BNC1	646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	83933213	83933213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	G	83933213	A	G	83933213	3	3	511	1	0	0	0	0	1	0	0	0	1474	449	16	3	2202	3	BNC1	15	83933213	Missense_Mutation	SNP	A	TCGA-CJ-4903-01A-01D-1429-08	9007944	83933213	18598179	43	29568											
OR1G1	8390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3030489	3030489	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	A	3030489	G	A	3030489	2	1	511	1	0	0	0	0	0	0	0	1	10964	987	35	2		2	OR1G1	17	3030489	Silent	SNP	G	TCGA-CJ-4903-01A-01D-1429-08		3030489	78164721	44	29569											
P2RX1	5023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3819428	3819428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	G	3819428	A	G	3819428	3	3	511	1	0	0	0	0	1	0	0	0	11346	43	2	3	1155	3	P2RX1	17	3819428	Missense_Mutation	SNP	A	TCGA-CJ-4903-01A-01D-1429-08	788939	3819428	77375782	45	29570											
MFSD6L	162387	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8702126	8702126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	8702126	C	T	8702126	3	4	511	1	0	0	0	0	1	0	0	0	9543	507	18	2	1451	2	MFSD6L	17	8702126	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	4882698	8702126	72493084	46	29571											
PLEKHH3	79990	broad.mit.edu	37	17	40820279	40820279	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	40820279	T	T	40820279	3	4	511	1	0	0	0	0	1	0	0	0	12085	1232	43	4	137	4	PLEKHH3	17	40820279	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	32118153	40820279	40374931	47	29572											
VPS25	84313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40925522	40925522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	G	40925522	A	G	40925522	3	3	511	1	0	0	0	0	1	0	0	0	17208	188	7	3	31	3	VPS25	17	40925522	Missense_Mutation	SNP	A	TCGA-CJ-4903-01A-01D-1429-08	105243	40925522	40269688	48	29573											
OR4D1	26689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56233390	56233390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	56233390	G	T	56233390	3	4	511	1	0	0	0	0	1	0	0	0	11060	991	35	4	878	4	OR4D1	17	56233390	Missense_Mutation	SNP	G	TCGA-CJ-4903-01A-01D-1429-08	15307868	56233390	24961820	49	29574											
POLG2	11232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62481972	62481972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	62481972	C	T	62481972	3	4	511	1	0	0	0	0	1	0	0	0	12208	884	31	1	490	1	POLG2	17	62481972	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	6248582	62481972	18713238	50	29575											
MKNK2	2872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2043146	2043146	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	2043146	A	T	2043146	3	4	511	1	0	0	0	0	1	0	0	0	9612	188	7	5	1054	5	MKNK2	19	2043146	Missense_Mutation	SNP	A	TCGA-CJ-4903-01A-01D-1429-08		2043146	57085837	51	29576											
ARFGEF2	10564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47591319	47591319	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	C	47591319	A	C	47591319	3	2	511	1	0	0	0	0	1	0	0	0	853	72	3	5	1732	5	ARFGEF2	20	47591319	Missense_Mutation	SNP	A	TCGA-CJ-4903-01A-01D-1429-08		47591319	15434201	52	29577											
TRAPPC2	6399	broad.mit.edu;hgsc.bcm.edu	37	X	13738010	13738010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	13738010	C	T	13738010	3	4	511	1	0	0	0	0	1	0	0	0	16470	797	28	2	365	2	TRAPPC2	23	13738010	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08		13738010	141532550	53	29578											
ATRX	546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	76855280	76855280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4903-01A-01D-1429-08	TCGA-CJ-4903-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3b685193-f1fa-4c1b-949b-bcdb2d1b934c	224a12b0-8203-45e5-a23e-3c913d687bd7	T	76855280	C	T	76855280	3	4	511	1	0	0	0	0	1	0	0	0	1208	826	29	2	1819	2	ATRX	23	76855280	Missense_Mutation	SNP	C	TCGA-CJ-4903-01A-01D-1429-08	63117270	76855280	78415280	54	29579											
NBPF3	84224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	21795329	21795329	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	21795329	C	G	21795329	2	3	512	1	0	0	0	0	0	0	0	1	10204	813	29	4		4	NBPF3	1	21795329	Silent	SNP	C	TCGA-CJ-4904-01A-02D-1429-08		21795329	227455292	1	29580											
ZBTB40	9923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22816881	22816881	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	C	22816881	A	C	22816881	3	2	512	1	0	0	0	0	1	0	0	0	17554	246	9	5	442	5	ZBTB40	1	22816881	Missense_Mutation	SNP	A	TCGA-CJ-4904-01A-02D-1429-08	1021552	22816881	226433740	2	29581											
CCDC76	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100606486	100606486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	100606486	G	A	100606486	3	1	512	1	0	0	0	0	1	0	0	0	2852	1233	43	2	606	2	CCDC76	1	100606486	Missense_Mutation	SNP	G	TCGA-CJ-4904-01A-02D-1429-08	77789605	100606486	148644135	3	29582											
F5	2153	broad.mit.edu;hgsc.bcm.edu	37	1	169510307	169510307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	C	169510307	G	C	169510307	3	2	512	1	0	0	0	0	1	0	0	0	5350	1174	41	4	2705	4	F5	1	169510307	Missense_Mutation	SNP	G	TCGA-CJ-4904-01A-02D-1429-08	68903821	169510307	79740314	4	29583											
PTCD3	55037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	86359530	86359530	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	86359530	A	G	86359530	2	3	512	1	0	0	0	0	0	0	0	1	12739	40	2	3		3	PTCD3	2	86359530	Silent	SNP	A	TCGA-CJ-4904-01A-02D-1429-08		86359530	156839843	5	29584											
BARD1	580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	215657073	215657073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	215657073	C	G	215657073	3	3	512	1	0	0	0	0	1	0	0	0	1312	826	29	4	2057	4	BARD1	2	215657073	Missense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08	129297543	215657073	27542300	6	29585											
SNCA	6622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	90743427	90743427	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	90743427	A	G	90743427	2	3	512	1	0	0	0	0	0	0	0	1	14853	175	7	3		3	SNCA	4	90743427	Silent	SNP	A	TCGA-CJ-4904-01A-02D-1429-08		90743427	100410849	7	29586											
ADH4	127	hgsc.bcm.edu;ucsc.edu	37	4	100047771	100047771	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	-	100047771	T	-	100047771	7	5	512	1	0	1	0	1	0	0	0	0	310	1451	51	0	58	0	ADH4	4	100047771	Frame_Shift_Del	DEL	T	TCGA-CJ-4904-01A-02D-1429-08	9304344	100047771	91106505	8	29587											
GAB1	2549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	144336751	144336751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	T	144336751	G	T	144336751	3	4	512	1	0	0	0	0	1	0	0	0	6155	1377	48	4	200	4	GAB1	4	144336751	Missense_Mutation	SNP	G	TCGA-CJ-4904-01A-02D-1429-08	44288980	144336751	46817525	9	29588											
GPM6A	2823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	176622807	176622807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	176622807	G	A	176622807	3	1	512	1	0	0	0	0	1	0	0	0	6622	1087	38	1	711	1	GPM6A	4	176622807	Missense_Mutation	SNP	G	TCGA-CJ-4904-01A-02D-1429-08	32286056	176622807	14531469	10	29589											
NNT	23530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	43619222	43619222	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	43619222	G	A	43619222	5	1	512	1	0	0	0	0	0	0	1	0	10517	1275	44	2	702	2	NNT	5	43619222	Splice_Site	SNP	G	TCGA-CJ-4904-01A-02D-1429-08		43619222	137296038	11	29590											
NRG2	9542	broad.mit.edu	37	5	139422020	139422020	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	139422020	A	A	139422020	3	1	512	1	0	0	0	0	1	0	0	0	10655	1203	42	2	2048	2	NRG2	5	139422020	Missense_Mutation	SNP	G	TCGA-CJ-4904-01A-02D-1429-08	95802798	139422020	41493240	12	29591											
FOXQ1	94234	hgsc.bcm.edu;ucsc.edu	37	6	1313357	1313357	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	C	1313357	T	C	1313357	2	2	512	1	0	0	0	0	0	0	0	1	6037	1606	56	3		3	FOXQ1	6	1313357	Silent	SNP	T	TCGA-CJ-4904-01A-02D-1429-08		1313357	169801710	13	29592											
OR2B3	442184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	29054943	29054943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	29054943	A	G	29054943	3	3	512	1	0	0	0	0	1	0	0	0	10997	14	1	3	862	3	OR2B3	6	29054943	Missense_Mutation	SNP	A	TCGA-CJ-4904-01A-02D-1429-08	27741586	29054943	142060124	14	29593											
MOSPD3	64598	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100211278	100211278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	100211278	C	A	100211278	3	1	512	1	0	0	0	0	1	0	0	0	9724	623	22	4	470	4	MOSPD3	7	100211278	Missense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08		100211278	58927385	15	29594											
JHDM1D	80853	hgsc.bcm.edu;ucsc.edu	37	7	139798703	139798703	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	-	139798703	C	-	139798703	7	5	512	1	0	1	0	1	0	0	0	0	7955	835	29	0	959	0	JHDM1D	7	139798703	Frame_Shift_Del	DEL	C	TCGA-CJ-4904-01A-02D-1429-08	39587425	139798703	19339960	16	29595											
TG	7038	broad.mit.edu;hgsc.bcm.edu	37	8	134034366	134034366	+	Missense_Mutation	SNP	G	G	A	rs121912650		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	134034366	G	A	134034366	3	1	512	1	0	0	0	0	1	0	0	0	15825	1058	37	1	7165	1	TG	8	134034366	Missense_Mutation	SNP	G	TCGA-CJ-4904-01A-02D-1429-08		134034366	12329656	17	29596											
PLEKHA7	144100	hgsc.bcm.edu	37	11	16876457	16876457	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	T	16876457	C	T	16876457	2	4	512	1	0	0	0	0	0	0	0	1	12068	813	29	2		2	PLEKHA7	11	16876457	Silent	SNP	C	TCGA-CJ-4904-01A-02D-1429-08		16876457	118130059	18	29597											
PPP1R14B	26472	broad.mit.edu	37	11	64013926	64013926	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	64013926	G	G	64013926	3	3	512	1	0	0	0	0	1	0	0	0	12370	159	6	3	239	3	PPP1R14B	11	64013926	Missense_Mutation	SNP	A	TCGA-CJ-4904-01A-02D-1429-08	47137469	64013926	70992590	19	29598											
CWC15	51503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	94704596	94704596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	C	94704596	A	C	94704596	3	2	512	1	0	0	0	0	1	0	0	0	4069	40	2	5	521	5	CWC15	11	94704596	Missense_Mutation	SNP	A	TCGA-CJ-4904-01A-02D-1429-08	30690670	94704596	40301920	20	29599											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108170468	108170468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	108170468	T	G	108170468	3	3	512	1	0	0	0	0	1	0	0	0	1109	1696	59	5	5163	5	ATM	11	108170468	Missense_Mutation	SNP	T	TCGA-CJ-4904-01A-02D-1429-08	13465872	108170468	26836048	21	29600											
KRT73	319101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53012201	53012201	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	T	53012201	G	T	53012201	2	4	512	1	0	0	0	0	0	0	0	1	8493	1306	46	4		4	KRT73	12	53012201	Silent	SNP	G	TCGA-CJ-4904-01A-02D-1429-08		53012201	80839694	22	29601											
GDF11	10220	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56142619	56142619	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	56142619	C	G	56142619	4	3	512	1	0	0	0	0	0	1	0	0	6319	838	29	4	701	4	GDF11	12	56142619	Nonsense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08	3130418	56142619	77709276	23	29602											
FSCB	84075	broad.mit.edu;hgsc.bcm.edu	37	14	44973940	44973940	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	44973940	C	G	44973940	3	3	512	1	0	0	0	0	1	0	0	0	6073	739	26	4	230	4	FSCB	14	44973940	Missense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08		44973940	62375600	24	29603											
TGM5	9333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43552495	43552495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	T	43552495	C	T	43552495	3	4	512	1	0	0	0	0	1	0	0	0	15845	869	30	2	2015	2	TGM5	15	43552495	Missense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08		43552495	58978897	25	29604											
PLEKHO2	80301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65157582	65157582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	T	65157582	C	T	65157582	3	4	512	1	0	0	0	0	1	0	0	0	12092	739	26	2	990	2	PLEKHO2	15	65157582	Missense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08	21605087	65157582	37373810	26	29605											
ITGA11	22801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	68642956	68642956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	68642956	T	A	68642956	3	1	512	1	0	0	0	0	1	0	0	0	7881	1623	56	5	2595	5	ITGA11	15	68642956	Missense_Mutation	SNP	T	TCGA-CJ-4904-01A-02D-1429-08	3485374	68642956	33888436	27	29606											
ADAMTS18	170692	broad.mit.edu;hgsc.bcm.edu	37	16	77387747	77387747	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	T	77387747	C	T	77387747	2	4	512	1	0	0	0	0	0	0	0	1	263	796	28	2		2	ADAMTS18	16	77387747	Silent	SNP	C	TCGA-CJ-4904-01A-02D-1429-08		77387747	12967006	28	29607											
RAI1	10743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	17699836	17699836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	17699836	A	G	17699836	3	3	512	1	0	0	0	0	1	0	0	0	13020	188	7	3	3576	3	RAI1	17	17699836	Missense_Mutation	SNP	A	TCGA-CJ-4904-01A-02D-1429-08		17699836	63495374	29	29608											
SLFN12L	100506736	broad.mit.edu;ucsc.edu	37	17	33802445	33802445	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	T	33802445	T	T	33802445	3	4	512	1	0	0	0	0	1	0	0	0	14748	1377	48	4	506	4	SLFN12L	17	33802445	Missense_Mutation	SNP	G	TCGA-CJ-4904-01A-02D-1429-08	16102609	33802445	47392765	30	29609											
TADA2A	6871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	35836946	35836946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	35836946	C	A	35836946	4	1	512	1	0	0	0	0	0	1	0	0	15522	489	17	4	1344	4	TADA2A	17	35836946	Nonsense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08	2034501	35836946	45358264	31	29610											
DYM	54808	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	46906085	46906085	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	46906085	C	G	46906085	3	3	512	1	0	0	0	0	1	0	0	0	4842	680	24	4	1828	4	DYM	18	46906085	Missense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08		46906085	31171163	32	29611											
ZNF407	55628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	72345031	72345031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	72345031	C	A	72345031	3	1	512	1	0	0	0	0	1	0	0	0	17899	507	18	4	2058	4	ZNF407	18	72345031	Missense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08	25438946	72345031	5732217	33	29612											
ZNF236	7776	hgsc.bcm.edu;ucsc.edu	37	18	74624247	74624247	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	-	74624247	G	-	74624247	7	5	512	1	0	1	0	1	0	0	0	0	17801	991	35	0	2913	0	ZNF236	18	74624247	Frame_Shift_Del	DEL	G	TCGA-CJ-4904-01A-02D-1429-08	2279216	74624247	3453001	34	29613											
NLRP8	126205	broad.mit.edu;hgsc.bcm.edu	37	19	56459316	56459316	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	T	56459316	C	T	56459316	2	4	512	1	0	0	0	0	0	0	0	1	10490	668	24	2		2	NLRP8	19	56459316	Silent	SNP	C	TCGA-CJ-4904-01A-02D-1429-08		56459316	2669667	35	29614											
TRIM28	10155	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	59057138	59057138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	59057138	C	G	59057138	3	3	512	1	0	0	0	0	1	0	0	0	16514	565	20	4	471	4	TRIM28	19	59057138	Missense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08	2597822	59057138	71845	36	29615											
TFAP2C	7022	hgsc.bcm.edu;ucsc.edu	37	20	55208541	55208541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	G	55208541	A	G	55208541	3	3	512	1	0	0	0	0	1	0	0	0	15801	391	14	3	733	3	TFAP2C	20	55208541	Missense_Mutation	SNP	A	TCGA-CJ-4904-01A-02D-1429-08		55208541	7816979	37	29616											
DSCAM	1826	hgsc.bcm.edu;ucsc.edu	37	21	41414412	41414412	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	41414412	G	A	41414412	2	1	512	1	0	0	0	0	0	0	0	1	4770	933	33	2		2	DSCAM	21	41414412	Silent	SNP	G	TCGA-CJ-4904-01A-02D-1429-08		41414412	6715483	38	29617											
ELFN2	114794	broad.mit.edu	37	22	37770332	37770332	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	T	37770332	T	T	37770332	3	4	512	1	0	0	0	0	1	0	0	0	5060	536	19	1	1223	1	ELFN2	22	37770332	Missense_Mutation	SNP	C	TCGA-CJ-4904-01A-02D-1429-08		37770332	13534234	39	29618											
CACNA1F	778	broad.mit.edu;hgsc.bcm.edu	37	X	49066823	49066823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	49066823	G	A	49066823	3	1	512	1	0	0	0	0	1	0	0	0	2545	1145	40	1	1414	1	CACNA1F	23	49066823	Missense_Mutation	SNP	G	TCGA-CJ-4904-01A-02D-1429-08		49066823	106203737	40	29619											
GUCY2F	2986	broad.mit.edu	37	X	108631719	108631719	+	Silent	SNP	T	A	A	novel		TCGA-CJ-4904-01A-02D-1429-08	TCGA-CJ-4904-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	9bedcded-0c33-4199-bdce-18681595c2d8	b246a266-4944-4bc7-849f-5936ecbfb8cd	A	108631719	A	A	108631719	2	1	512	1	0	0	0	0	0	0	0	1	6905	1594	55	5		5	GUCY2F	23	108631719	Silent	SNP	T	TCGA-CJ-4904-01A-02D-1429-08	59564896	108631719	46638841	41	29620											
CPSF3L	54973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	1249171	1249171	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	1249171	A	C	1249171	3	2	513	1	0	0	0	0	1	0	0	0	3829	43	2	5	940	5	CPSF3L	1	1249171	Missense_Mutation	SNP	A	TCGA-CJ-4905-01A-02D-1429-08		1249171	248001450	1	29621											
MIIP	60672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12081816	12081816	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	12081816	G	T	12081816	2	4	513	1	0	0	0	0	0	0	0	1	9592	1190	42	4		4	MIIP	1	12081816	Silent	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	10832645	12081816	237168805	2	29622											
UBXN10	127733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	20517187	20517187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	20517187	C	T	20517187	3	4	513	1	0	0	0	0	1	0	0	0	16924	527	19	1	135	1	UBXN10	1	20517187	Missense_Mutation	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	8435371	20517187	228733434	3	29623											
ATP1B1	481	broad.mit.edu	37	1	169100955	169100955	+	RNA	SNP	A	T	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	169100955	T	T	169100955	1	4	513	0	1	0	0	0	0	0	0	0	1132	377	13	5		5	ATP1B1	1	169100955	RNA	SNP	A	TCGA-CJ-4905-01A-02D-1429-08	148583768	169100955	80149666	4	29624											
CFH	3075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	196642242	196642242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	196642242	G	A	196642242	3	1	513	1	0	0	0	0	1	0	0	0	3285	1261	44	2	199	2	CFH	1	196642242	Missense_Mutation	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	27541287	196642242	52608379	5	29625											
SDCCAG8	10806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	243581274	243581274	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	243581274	T	A	243581274	3	1	513	1	0	0	0	0	1	0	0	0	13972	1461	51	5	1807	5	SDCCAG8	1	243581274	Missense_Mutation	SNP	T	TCGA-CJ-4905-01A-02D-1429-08	46939032	243581274	5669347	6	29626											
PXDN	7837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1653137	1653137	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	1653137	C	T	1653137	2	4	513	1	0	0	0	0	0	0	0	1	12860	639	23	1		1	PXDN	2	1653137	Silent	SNP	C	TCGA-CJ-4905-01A-02D-1429-08		1653137	241546236	7	29627											
NEB	4703	broad.mit.edu;hgsc.bcm.edu	37	2	152397301	152397301	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	152397301	T	C	152397301	2	2	513	1	0	0	0	0	0	0	0	1	10309	1722	60	3		3	NEB	2	152397301	Silent	SNP	T	TCGA-CJ-4905-01A-02D-1429-08	150744164	152397301	90802072	8	29628											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170011038	170011038	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	G	170011038	T	G	170011038	3	3	513	1	0	0	0	0	1	0	0	0	8963	1551	54	5	1796	5	LRP2	2	170011038	Missense_Mutation	SNP	T	TCGA-CJ-4905-01A-02D-1429-08	17613737	170011038	73188335	9	29629											
TTN	7273	broad.mit.edu;ucsc.edu	37	2	179479674	179479674	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	179479674	T	T	179479674	2	4	513	1	0	0	0	0	0	0	0	1	16747	680	24	2		2	TTN	2	179479674	Silent	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	9468636	179479674	63719699	10	29630											
SSFA2	6744	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	182757372	182757372	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	182757372	G	A	182757372	4	1	513	1	0	0	0	0	0	1	0	0	15195	1357	47	2	248	2	SSFA2	2	182757372	Nonsense_Mutation	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	3277698	182757372	60442001	11	29631											
RPE	6120	hgsc.bcm.edu	37	2	210874384	210874384	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	-	210874384	T	-	210874384	7	5	513	1	0	1	0	1	0	0	0	0	13557	1490	52	0	132	0	RPE	2	210874384	Frame_Shift_Del	DEL	T	TCGA-CJ-4905-01A-02D-1429-08	28117012	210874384	32324989	12	29632											
CDCP1	64866	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	45134910	45134910	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	G	45134910	C	G	45134910	3	3	513	1	0	0	0	0	1	0	0	0	3095	652	23	4	1040	4	CDCP1	3	45134910	Missense_Mutation	SNP	C	TCGA-CJ-4905-01A-02D-1429-08		45134910	152887520	13	29633											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52713608	52713614	+	Frame_Shift_Del	DEL	ATTGGAA	ATTGGAA	-	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	ATTGGAA	ATTGGAA	ATTGGAA	-	ATTGGAA	ATTGGAA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	-	52713614	ATTGGAA	-	52713608	7	5	513	1	0	1	0	1	0	0	0	0	11498	330	12	0	4900	0	PBRM1	3	52713608	Frame_Shift_Del	DEL	ATTGGAA	TCGA-CJ-4905-01A-02D-1429-08	7578698	52713608	145308822	14	29634											
BOC	91653	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	112969403	112969403	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	112969403	C	T	112969403	2	4	513	1	0	0	0	0	0	0	0	1	1481	550	19	1		1	BOC	3	112969403	Silent	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	60255795	112969403	85053027	15	29635											
FAM162A	26355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	122123119	122123119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	122123119	G	A	122123119	3	1	513	1	0	0	0	0	1	0	0	0	5478	1029	36	2	182	2	FAM162A	3	122123119	Missense_Mutation	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	9153716	122123119	75899311	16	29636											
COL6A6	131873	hgsc.bcm.edu;ucsc.edu	37	3	130300584	130300584	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	-	130300584	G	-	130300584	7	5	513	1	0	1	0	1	0	0	0	0	3705	1029	36	0	3757	0	COL6A6	3	130300584	Frame_Shift_Del	DEL	G	TCGA-CJ-4905-01A-02D-1429-08	8177465	130300584	67721846	17	29637											
YTHDC1	91746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	69188621	69188621	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	69188621	C	A	69188621	4	1	513	1	0	0	0	0	0	1	0	0	17508	835	29	4	764	4	YTHDC1	4	69188621	Nonsense_Mutation	SNP	C	TCGA-CJ-4905-01A-02D-1429-08		69188621	121965655	18	29638											
ABCE1	6059	broad.mit.edu;hgsc.bcm.edu	37	4	146041212	146041212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	146041212	C	A	146041212	3	1	513	1	0	0	0	0	1	0	0	0	64	855	30	4	1089	4	ABCE1	4	146041212	Missense_Mutation	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	76852591	146041212	45113064	19	29639											
POLR3G	10622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	89781415	89781415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	89781415	G	A	89781415	3	1	513	1	0	0	0	0	1	0	0	0	12241	1319	46	2	33	2	POLR3G	5	89781415	Missense_Mutation	SNP	G	TCGA-CJ-4905-01A-02D-1429-08		89781415	91133845	20	29640											
ANKHD1	54882	hgsc.bcm.edu;ucsc.edu	37	5	139864742	139864743	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	-	139864743	AT	-	139864742	7	5	513	1	0	1	0	1	0	0	0	0	628	217	8	0	2059	0	ANKHD1	5	139864742	Frame_Shift_Del	DEL	AT	TCGA-CJ-4905-01A-02D-1429-08	50083327	139864742	41050518	21	29641											
SLC36A1	206358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150853235	150853235	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	150853235	G	C	150853235	3	2	513	1	0	0	0	0	1	0	0	0	14606	1014	35	4	751	4	SLC36A1	5	150853235	Missense_Mutation	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	10988493	150853235	30062025	22	29642											
DTNBP1	84062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	15615585	15615585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	G	15615585	T	G	15615585	3	3	513	1	0	0	0	0	1	0	0	0	4792	1464	51	5	775	5	DTNBP1	6	15615585	Missense_Mutation	SNP	T	TCGA-CJ-4905-01A-02D-1429-08		15615585	155499482	23	29643											
TULP1	7287	broad.mit.edu;hgsc.bcm.edu	37	6	35479476	35479476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	35479476	G	T	35479476	3	4	513	1	0	0	0	0	1	0	0	0	16785	1087	38	4	1378	4	TULP1	6	35479476	Missense_Mutation	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	19863891	35479476	135635591	24	29644											
PHIP	55023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	79650693	79650693	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	G	79650693	T	G	79650693	3	3	513	1	0	0	0	0	1	0	0	0	11849	1435	50	5	286	5	PHIP	6	79650693	Missense_Mutation	SNP	T	TCGA-CJ-4905-01A-02D-1429-08	44171217	79650693	91464374	25	29645											
SPAM1	6677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	123595133	123595133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	123595133	G	A	123595133	3	1	513	1	0	0	0	0	1	0	0	0	14999	1058	37	1	1043	1	SPAM1	7	123595133	Missense_Mutation	SNP	G	TCGA-CJ-4905-01A-02D-1429-08		123595133	35543530	26	29646											
SLC7A13	157724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	87229763	87229763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	G	87229763	A	G	87229763	3	3	513	1	0	0	0	0	1	0	0	0	14708	449	16	3	305	3	SLC7A13	8	87229763	Missense_Mutation	SNP	A	TCGA-CJ-4905-01A-02D-1429-08		87229763	59134259	27	29647											
RANBP6	26953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	6014375	6014375	+	Silent	SNP	G	G	A	rs146563217	alternate_allele	TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	6014375	G	A	6014375	2	1	513	1	0	0	0	0	0	0	0	1	13044	1103	39	1		1	RANBP6	9	6014375	Silent	SNP	G	TCGA-CJ-4905-01A-02D-1429-08		6014375	135199056	28	29648											
C10orf18	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	5790452	5790452	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	5790452	A	C	5790452	3	2	513	1	0	0	0	0	1	0	0	0	1598	101	4	5	5114	5	C10orf18	10	5790452	Missense_Mutation	SNP	A	TCGA-CJ-4905-01A-02D-1429-08		5790452	129744295	29	29649											
ANK3	288	hgsc.bcm.edu;ucsc.edu	37	10	61865763	61865764	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	-	61865764	TT	-	61865763	7	5	513	1	0	1	0	1	0	0	0	0	622	1722	60	0	10282	0	ANK3	10	61865763	Frame_Shift_Del	DEL	TT	TCGA-CJ-4905-01A-02D-1429-08	56075311	61865763	73668984	30	29650											
ABLIM1	3983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	116307474	116307474	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	116307474	C	T	116307474	2	4	513	1	0	0	0	0	0	0	0	1	94	564	20	2		2	ABLIM1	10	116307474	Silent	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	54441711	116307474	19227273	31	29651											
OR4C15	81309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55321820	55321820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	55321820	C	A	55321820	3	1	513	1	0	0	0	0	1	0	0	0	11055	710	25	4	40	4	OR4C15	11	55321820	Missense_Mutation	SNP	C	TCGA-CJ-4905-01A-02D-1429-08		55321820	79684696	32	29652											
PITPNM1	9600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	67266179	67266179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	G	67266179	A	G	67266179	3	3	513	1	0	0	0	0	1	0	0	0	11957	304	11	3	2422	3	PITPNM1	11	67266179	Missense_Mutation	SNP	A	TCGA-CJ-4905-01A-02D-1429-08	11944359	67266179	67740337	33	29653											
NARS2	79731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	78154737	78154737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	78154737	C	A	78154737	3	1	513	1	0	0	0	0	1	0	0	0	10178	884	31	4	213	4	NARS2	11	78154737	Missense_Mutation	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	10888558	78154737	56851779	34	29654											
EXPH5	23086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108389044	108389044	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	108389044	G	T	108389044	2	4	513	1	0	0	0	0	0	0	0	1	5324	1161	41	4		4	EXPH5	11	108389044	Silent	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	30234307	108389044	26617472	35	29655											
APOA5	116519	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	116661335	116661335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	116661335	G	A	116661335	3	1	513	1	0	0	0	0	1	0	0	0	784	1087	38	1	494	1	APOA5	11	116661335	Missense_Mutation	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	8272291	116661335	18345181	36	29656											
GPR84	53831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54757575	54757575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	G	54757575	A	G	54757575	3	3	513	1	0	0	0	0	1	0	0	0	6721	362	13	3	1133	3	GPR84	12	54757575	Missense_Mutation	SNP	A	TCGA-CJ-4905-01A-02D-1429-08		54757575	79094320	37	29657											
FAM19A2	338811	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	62147529	62147529	+	Splice_Site	SNP	T	T	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	62147529	T	A	62147529	5	1	513	1	0	0	0	0	0	0	1	0	5536	1536	53	5	145	5	FAM19A2	12	62147529	Splice_Site	SNP	T	TCGA-CJ-4905-01A-02D-1429-08	7389954	62147529	71704366	38	29658											
C12orf51	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	112688106	112688106	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	112688106	G	C	112688106	2	2	513	1	0	0	0	0	0	0	0	1	1698	1335	47	4		4	C12orf51	12	112688106	Silent	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	50540577	112688106	21163789	39	29659											
FLT3	2322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	28597599	28597599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	28597599	T	C	28597599	3	2	513	1	0	0	0	0	1	0	0	0	5949	1783	62	3	699	3	FLT3	13	28597599	Missense_Mutation	SNP	T	TCGA-CJ-4905-01A-02D-1429-08		28597599	86572279	40	29660											
PCDH20	64881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	61987113	61987113	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	61987113	C	A	61987113	2	1	513	1	0	0	0	0	0	0	0	1	11522	581	21	4		4	PCDH20	13	61987113	Silent	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	33389514	61987113	53182765	41	29661											
KIAA0317	9870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75136411	75136411	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	G	75136411	T	G	75136411	3	3	513	1	0	0	0	0	1	0	0	0	8174	1551	54	5	640	5	KIAA0317	14	75136411	Missense_Mutation	SNP	T	TCGA-CJ-4905-01A-02D-1429-08		75136411	32213129	42	29662											
CORO1A	11151	broad.mit.edu	37	16	30199863	30199863	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	30199863	C	C	30199863	3	2	513	1	0	0	0	0	1	0	0	0	3755	1000	35	4	1281	4	CORO1A	16	30199863	Missense_Mutation	SNP	G	TCGA-CJ-4905-01A-02D-1429-08		30199863	60154890	43	29663											
SRCAP	10847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30740445	30740445	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	30740445	T	C	30740445	2	2	513	1	0	0	0	0	0	0	0	1	15147	1712	60	3		3	SRCAP	16	30740445	Silent	SNP	T	TCGA-CJ-4905-01A-02D-1429-08	540582	30740445	59614308	44	29664											
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu	37	16	87446254	87446254	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	-	87446254	G	-	87446254	7	5	513	1	0	1	0	1	0	0	0	0	17595	962	34	0	1195	0	ZCCHC14	16	87446254	Frame_Shift_Del	DEL	G	TCGA-CJ-4905-01A-02D-1429-08	56705809	87446254	2908499	45	29665											
CNP	1267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40120540	40120540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	40120540	C	T	40120540	3	4	513	1	0	0	0	0	1	0	0	0	3628	768	27	1	464	1	CNP	17	40120540	Missense_Mutation	SNP	C	TCGA-CJ-4905-01A-02D-1429-08		40120540	41074670	46	29666											
HSD17B1	3292	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40706578	40706578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	G	40706578	A	G	40706578	3	3	513	1	0	0	0	0	1	0	0	0	7385	188	7	3	713	3	HSD17B1	17	40706578	Missense_Mutation	SNP	A	TCGA-CJ-4905-01A-02D-1429-08	586038	40706578	40488632	47	29667											
COL1A1	1277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48267076	48267076	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	48267076	A	T	48267076	2	4	513	1	0	0	0	0	0	0	0	1	3679	175	7	5		5	COL1A1	17	48267076	Silent	SNP	A	TCGA-CJ-4905-01A-02D-1429-08	7560498	48267076	32928134	48	29668											
ZNF396	252884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	32948335	32948335	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	32948335	A	C	32948335	3	2	513	1	0	0	0	0	1	0	0	0	17894	275	10	5	23	5	ZNF396	18	32948335	Missense_Mutation	SNP	A	TCGA-CJ-4905-01A-02D-1429-08		32948335	45128913	49	29669											
SIRT6	51548	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4180866	4180866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	4180866	T	A	4180866	3	1	513	1	0	0	0	0	1	0	0	0	14355	1783	62	5	988	5	SIRT6	19	4180866	Missense_Mutation	SNP	T	TCGA-CJ-4905-01A-02D-1429-08		4180866	54948117	50	29670											
ZNF358	140467	broad.mit.edu;hgsc.bcm.edu	37	19	7584511	7584511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	7584511	C	T	7584511	3	4	513	1	0	0	0	0	1	0	0	0	17879	565	20	2	385	2	ZNF358	19	7584511	Missense_Mutation	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	3403645	7584511	51544472	51	29671											
ZNF627	199692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11725352	11725352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	11725352	C	T	11725352	3	4	513	1	0	0	0	0	1	0	0	0	18063	739	26	2	20	2	ZNF627	19	11725352	Missense_Mutation	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	4140841	11725352	47403631	52	29672											
ZNF527	84503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37879644	37879644	+	Silent	SNP	G	G	A	rs73930983	bycluster	TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	37879644	G	A	37879644	2	1	513	1	0	0	0	0	0	0	0	1	17980	1132	40	1		1	ZNF527	19	37879644	Silent	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	26154292	37879644	21249339	53	29673											
POLD1	5424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50905132	50905132	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	50905132	C	T	50905132	2	4	513	1	0	0	0	0	0	0	0	1	12197	805	28	2		2	POLD1	19	50905132	Silent	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	13025488	50905132	8223851	54	29674											
EPB41L1	2036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34778270	34778270	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	34778270	C	T	34778270	2	4	513	1	0	0	0	0	0	0	0	1	5154	900	32	2		2	EPB41L1	20	34778270	Silent	SNP	C	TCGA-CJ-4905-01A-02D-1429-08		34778270	28247250	55	29675											
RBPJL	11317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	43938268	43938268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	43938268	T	C	43938268	3	2	513	1	0	0	0	0	1	0	0	0	13175	1696	59	3	203	3	RBPJL	20	43938268	Missense_Mutation	SNP	T	TCGA-CJ-4905-01A-02D-1429-08	9159998	43938268	19087252	56	29676											
PIGT	51604	broad.mit.edu;hgsc.bcm.edu	37	20	44049024	44049024	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	C	44049024	G	C	44049024	2	2	513	1	0	0	0	0	0	0	0	1	11906	1335	47	4		4	PIGT	20	44049024	Silent	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	110756	44049024	18976496	57	29677											
C21orf58	54058	hgsc.bcm.edu	37	21	47722405	47722405	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	47722405	G	A	47722405	2	1	513	1	0	0	0	0	0	0	0	1	2131	1219	43	2		2	C21orf58	21	47722405	Silent	SNP	G	TCGA-CJ-4905-01A-02D-1429-08		47722405	407490	58	29678											
BPIL2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	32853321	32853321	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	32853321	A	T	32853321	3	4	513	1	0	0	0	0	1	0	0	0	1494	304	11	5	1530	5	BPIL2	22	32853321	Missense_Mutation	SNP	A	TCGA-CJ-4905-01A-02D-1429-08		32853321	18451245	59	29679											
MTMR8	55613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	63568632	63568632	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	63568632	T	A	63568632	3	1	513	1	0	0	0	0	1	0	0	0	9956	1696	59	5	1510	5	MTMR8	23	63568632	Missense_Mutation	SNP	T	TCGA-CJ-4905-01A-02D-1429-08		63568632	91701928	60	29680											
RGAG4	340526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	71351148	71351148	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	A	71351148	C	A	71351148	2	1	513	1	0	0	0	0	0	0	0	1	13288	610	22	4		4	RGAG4	23	71351148	Silent	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	7782516	71351148	83919412	61	29681											
ARMCX3	51566	hgsc.bcm.edu;ucsc.edu	37	X	100880719	100880719	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	-	100880719	T	-	100880719	7	5	513	1	0	1	0	1	0	0	0	0	961	1712	60	0	752	0	ARMCX3	23	100880719	Frame_Shift_Del	DEL	T	TCGA-CJ-4905-01A-02D-1429-08	29529571	100880719	54389841	62	29682											
GUCY2F	2986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	108691325	108691325	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	108691325	C	T	108691325	2	4	513	1	0	0	0	0	0	0	0	1	6905	523	19	1		1	GUCY2F	23	108691325	Silent	SNP	C	TCGA-CJ-4905-01A-02D-1429-08	7810606	108691325	46579235	63	29683											
RAB33A	9363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129306270	129306270	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4905-01A-02D-1429-08	TCGA-CJ-4905-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	22eb9dc5-8d5e-4158-8edc-12ff62a612be	11fa27c3-4ea9-403e-8ae0-a1f64f314b18	T	129306270	G	T	129306270	2	4	513	1	0	0	0	0	0	0	0	1	12935	1335	47	4		4	RAB33A	23	129306270	Silent	SNP	G	TCGA-CJ-4905-01A-02D-1429-08	20614945	129306270	25964290	64	29684											
TAS1R3	83756	broad.mit.edu;hgsc.bcm.edu	37	1	1267928	1267928	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	1267928	G	A	1267928	2	1	514	1	0	0	0	0	0	0	0	1	15576	933	33	2		2	TAS1R3	1	1267928	Silent	SNP	G	TCGA-CJ-4907-01A-01D-1429-08		1267928	247982693	1	29685											
MTOR	2475	broad.mit.edu	37	1	11217230	11217230	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	11217230	A	A	11217230	3	1	514	1	0	0	0	0	1	0	0	0	9961	710	25	4	3317	4	MTOR	1	11217230	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	9949302	11217230	238033391	2	29686											
PLEKHM2	23207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16058448	16058448	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	16058448	A	C	16058448	3	2	514	1	0	0	0	0	1	0	0	0	12088	217	8	5	2596	5	PLEKHM2	1	16058448	Missense_Mutation	SNP	A	TCGA-CJ-4907-01A-01D-1429-08	4841218	16058448	233192173	3	29687											
EPHA8	2046	broad.mit.edu	37	1	22902868	22902868	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	22902868	T	T	22902868	2	4	514	1	0	0	0	0	0	0	0	1	5175	755	27	1		1	EPHA8	1	22902868	Silent	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	6844420	22902868	226347753	4	29688											
EXTL1	2134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26357724	26357724	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	26357724	C	T	26357724	2	4	514	1	0	0	0	0	0	0	0	1	5327	610	22	2		2	EXTL1	1	26357724	Silent	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	3454856	26357724	222892897	5	29689											
PLEKHH2	130271	hgsc.bcm.edu;ucsc.edu	37	2	43939458	43939458	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	-	43939458	A	-	43939458	7	5	514	1	0	1	0	1	0	0	0	0	12084	130	5	0	2450	0	PLEKHH2	2	43939458	Frame_Shift_Del	DEL	A	TCGA-CJ-4907-01A-01D-1429-08		43939458	199259915	6	29690											
GCC2	9648	broad.mit.edu;hgsc.bcm.edu	37	2	109113518	109113518	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	G	109113518	C	G	109113518	3	3	514	1	0	0	0	0	1	0	0	0	6293	797	28	4	4817	4	GCC2	2	109113518	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	65174060	109113518	134085855	7	29691											
THSD7B	80731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	138033572	138033572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	138033572	T	A	138033572	3	1	514	1	0	0	0	0	1	0	0	0	15892	1580	55	5	2425	5	THSD7B	2	138033572	Missense_Mutation	SNP	T	TCGA-CJ-4907-01A-01D-1429-08	28920054	138033572	105165801	8	29692											
TTN	7273	broad.mit.edu;hgsc.bcm.edu	37	2	179558720	179558720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	179558720	G	T	179558720	3	4	514	1	0	0	0	0	1	0	0	0	16747	1377	48	4	73067	4	TTN	2	179558720	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	41525148	179558720	63640653	9	29693											
STT3B	201595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	31658488	31658488	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	31658488	G	C	31658488	3	2	514	1	0	0	0	0	1	0	0	0	15346	1020	36	4	1070	4	STT3B	3	31658488	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08		31658488	166363942	10	29694											
KIAA2018	205717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113374665	113374665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	113374665	G	T	113374665	3	4	514	1	0	0	0	0	1	0	0	0	8275	942	33	4	877	4	KIAA2018	3	113374665	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	81716177	113374665	84647765	11	29695											
IGSF11	152404	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	118621704	118621704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	118621704	C	T	118621704	3	4	514	1	0	0	0	0	1	0	0	0	7605	884	31	1	340	1	IGSF11	3	118621704	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	5247039	118621704	79400726	12	29696											
DRD5	1816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	9784913	9784913	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	9784913	C	T	9784913	2	4	514	1	0	0	0	0	0	0	0	1	4762	639	23	1		1	DRD5	4	9784913	Silent	SNP	C	TCGA-CJ-4907-01A-01D-1429-08		9784913	181369363	13	29697											
CENPC1	1060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	68380078	68380078	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	G	68380078	A	G	68380078	2	3	514	1	0	0	0	0	0	0	0	1	3231	59	3	3		3	CENPC1	4	68380078	Silent	SNP	A	TCGA-CJ-4907-01A-01D-1429-08	58595165	68380078	122774198	14	29698											
ADH1B	125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	100239948	100239948	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	100239948	G	C	100239948	2	2	514	1	0	0	0	0	0	0	0	1	308	1306	46	4		4	ADH1B	4	100239948	Silent	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	31859870	100239948	90914328	15	29699											
NPNT	255743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	106819134	106819134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	106819134	C	T	106819134	3	4	514	1	0	0	0	0	1	0	0	0	10597	884	31	1	154	1	NPNT	4	106819134	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	6579186	106819134	84335142	16	29700											
COL25A1	84570	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	109783657	109783657	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	109783657	C	T	109783657	2	4	514	1	0	0	0	0	0	0	0	1	3686	695	24	2		2	COL25A1	4	109783657	Silent	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	2964523	109783657	81370619	17	29701											
ZCCHC9	84240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	80600797	80600797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	80600797	G	T	80600797	3	4	514	1	0	0	0	0	1	0	0	0	17607	1174	41	4	223	4	ZCCHC9	5	80600797	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08		80600797	100314463	18	29702											
DMXL1	1657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	118484562	118484562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	G	118484562	A	G	118484562	3	3	514	1	0	0	0	0	1	0	0	0	4596	246	9	3	3110	3	DMXL1	5	118484562	Missense_Mutation	SNP	A	TCGA-CJ-4907-01A-01D-1429-08	37883765	118484562	62430698	19	29703											
BRD8	10902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137502346	137502346	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	137502346	A	T	137502346	2	4	514	1	0	0	0	0	0	0	0	1	1508	407	15	5		5	BRD8	5	137502346	Silent	SNP	A	TCGA-CJ-4907-01A-01D-1429-08	19017784	137502346	43412914	20	29704											
FAT2	2196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150925180	150925180	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	150925180	G	C	150925180	3	2	514	1	0	0	0	0	1	0	0	0	5697	1165	41	4	7601	4	FAT2	5	150925180	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	13422834	150925180	29990080	21	29705											
STK10	6793	broad.mit.edu;hgsc.bcm.edu	37	5	171481605	171481605	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	G	171481605	C	G	171481605	3	3	514	1	0	0	0	0	1	0	0	0	15298	835	29	4	298	4	STK10	5	171481605	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	20556425	171481605	9433655	22	29706											
DTNBP1	84062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	15627643	15627643	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	15627643	C	A	15627643	4	1	514	1	0	0	0	0	0	1	0	0	4792	864	30	4	894	4	DTNBP1	6	15627643	Nonsense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08		15627643	155487424	23	29707											
ATF6B	1388	broad.mit.edu	37	6	32095464	32095464	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	32095464	C	C	32095464	3	2	514	1	0	0	0	0	1	0	0	0	1085	1116	39	4	2024	4	ATF6B	6	32095464	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	16467821	32095464	139019603	24	29708											
CNKSR3	154043	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	154743778	154743778	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	154743778	C	T	154743778	4	4	514	1	0	0	0	0	0	1	0	0	3610	740	26	2	880	2	CNKSR3	6	154743778	Nonsense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	122648314	154743778	16371289	25	29709											
MAP3K4	4216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	161513128	161513128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	161513128	G	T	161513128	3	4	514	1	0	0	0	0	1	0	0	0	9259	1290	45	4	3272	4	MAP3K4	6	161513128	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	6769350	161513128	9601939	26	29710											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	48556330	48556330	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	48556330	T	A	48556330	2	1	514	1	0	0	0	0	0	0	0	1	31	1538	54	5		5	ABCA13	7	48556330	Silent	SNP	T	TCGA-CJ-4907-01A-01D-1429-08		48556330	110582333	27	29711											
LRGUK	136332	hgsc.bcm.edu;ucsc.edu	37	7	133848194	133848198	+	Frame_Shift_Del	DEL	GCCCT	GCCCT	-	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	GCCCT	GCCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	-	133848198	GCCCT	-	133848194	7	5	514	1	0	1	0	1	0	0	0	0	8950	971	34	0	867	0	LRGUK	7	133848194	Frame_Shift_Del	DEL	GCCCT	TCGA-CJ-4907-01A-01D-1429-08	85291864	133848194	25290469	28	29712											
CNOT4	4850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	135080392	135080392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	135080392	T	C	135080392	3	2	514	1	0	0	0	0	1	0	0	0	3623	1696	59	3	922	3	CNOT4	7	135080392	Missense_Mutation	SNP	T	TCGA-CJ-4907-01A-01D-1429-08	1232198	135080392	24058271	29	29713											
UBE3C	9690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	157049683	157049683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	157049683	G	A	157049683	3	1	514	1	0	0	0	0	1	0	0	0	16893	1087	38	1	3112	1	UBE3C	7	157049683	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	21969291	157049683	2088980	30	29714											
PTPRN2	5799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	157985057	157985057	+	Missense_Mutation	SNP	C	C	T	rs137877535	bycluster;by1000genomes	TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	157985057	C	T	157985057	3	4	514	1	0	0	0	0	1	0	0	0	12821	768	27	1	2612	1	PTPRN2	7	157985057	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	935374	157985057	1153606	31	29715											
CSMD1	64478	broad.mit.edu	37	8	3216686	3216686	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	3216686	A	A	3216686	3	1	514	1	0	0	0	0	1	0	0	0	3946	1203	42	2	7602	2	CSMD1	8	3216686	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08		3216686	143147336	32	29716											
PSKH2	85481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	87060713	87060713	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	87060713	G	T	87060713	4	4	514	1	0	0	0	0	0	1	0	0	12675	1059	37	4	23	4	PSKH2	8	87060713	Nonsense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	83844027	87060713	59303309	33	29717											
PABPC1	26986	broad.mit.edu;hgsc.bcm.edu	37	8	101719135	101719135	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	101719135	A	T	101719135	3	4	514	1	0	0	0	0	1	0	0	0	11370	275	10	5	503	5	PABPC1	8	101719135	Missense_Mutation	SNP	A	TCGA-CJ-4907-01A-01D-1429-08	14658422	101719135	44644887	34	29718											
MTSS1	9788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125565825	125565825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	125565825	C	T	125565825	3	4	514	1	0	0	0	0	1	0	0	0	9969	884	31	1	595	1	MTSS1	8	125565825	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	23846690	125565825	20798197	35	29719											
FAM135B	51059	hgsc.bcm.edu	37	8	139165459	139165459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	139165459	C	A	139165459	3	1	514	1	0	0	0	0	1	0	0	0	5453	637	22	4	2993	4	FAM135B	8	139165459	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	13599634	139165459	7198563	36	29720											
LAMC3	10319	broad.mit.edu;hgsc.bcm.edu	37	9	133911651	133911651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	133911651	G	A	133911651	3	1	514	1	0	0	0	0	1	0	0	0	8623	1087	38	1	922	1	LAMC3	9	133911651	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08		133911651	7301780	37	29721											
NEURL	9148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	105330649	105330649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	105330649	C	A	105330649	3	1	514	1	0	0	0	0	1	0	0	0	10352	623	22	4	112	4	NEURL	10	105330649	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08		105330649	30204098	38	29722											
OSBPL5	114879	broad.mit.edu	37	11	3109495	3109495	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	3109495	A	A	3109495	2	1	514	1	0	0	0	0	0	0	0	1	11287	987	35	2		2	OSBPL5	11	3109495	Silent	SNP	G	TCGA-CJ-4907-01A-01D-1429-08		3109495	131897021	39	29723											
PPFIBP2	8495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	7663540	7663540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	7663540	C	T	7663540	3	4	514	1	0	0	0	0	1	0	0	0	12321	565	20	2	1591	2	PPFIBP2	11	7663540	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	4554045	7663540	127342976	40	29724											
CTNND1	1500	broad.mit.edu;ucsc.edu	37	11	57573944	57573944	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	57573944	C	C	57573944	3	2	514	1	0	0	0	0	1	0	0	0	4021	1551	54	3	1922	3	CTNND1	11	57573944	Missense_Mutation	SNP	T	TCGA-CJ-4907-01A-01D-1429-08	49910404	57573944	77432572	41	29725											
JRKL	8690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	96124831	96124831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	96124831	G	T	96124831	3	4	514	1	0	0	0	0	1	0	0	0	7972	1319	46	4	1020	4	JRKL	11	96124831	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	38550887	96124831	38881685	42	29726											
CNTN5	53942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	99942549	99942549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	99942549	C	A	99942549	3	1	514	1	0	0	0	0	1	0	0	0	3646	797	28	4	1450	4	CNTN5	11	99942549	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	3817718	99942549	35063967	43	29727											
PAH	5053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	103240687	103240687	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	103240687	C	A	103240687	4	1	514	1	0	0	0	0	0	1	0	0	11401	835	29	4	423	4	PAH	12	103240687	Nonsense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08		103240687	30611208	44	29728											
OAS1	4938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113346530	113346530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	113346530	C	A	113346530	3	1	514	1	0	0	0	0	1	0	0	0	10806	855	30	4	376	4	OAS1	12	113346530	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	10105843	113346530	20505365	45	29729											
MTUS2	23281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	29599346	29599346	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	29599346	G	T	29599346	4	4	514	1	0	0	0	0	0	1	0	0	9973	1175	41	4	543	4	MTUS2	13	29599346	Nonsense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08		29599346	85570532	46	29730											
CCNA1	8900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	37014312	37014312	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	37014312	C	T	37014312	2	4	514	1	0	0	0	0	0	0	0	1	2911	680	24	2		2	CCNA1	13	37014312	Silent	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	7414966	37014312	78155566	47	29731											
STRN3	29966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	31376115	31376115	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	31376115	A	T	31376115	4	4	514	1	0	0	0	0	0	1	0	0	15342	131	5	5	557	5	STRN3	14	31376115	Nonsense_Mutation	SNP	A	TCGA-CJ-4907-01A-01D-1429-08		31376115	75973425	48	29732											
FLRT2	23768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	86089519	86089519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	86089519	T	C	86089519	3	2	514	1	0	0	0	0	1	0	0	0	5946	1696	59	3	1663	3	FLRT2	14	86089519	Missense_Mutation	SNP	T	TCGA-CJ-4907-01A-01D-1429-08	54713404	86089519	21260021	49	29733											
RYR3	6263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	34137144	34137144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	34137144	G	A	34137144	3	1	514	1	0	0	0	0	1	0	0	0	13783	971	34	2	13748	2	RYR3	15	34137144	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08		34137144	68394248	50	29734											
AQR	9716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	35149171	35149171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	35149171	C	T	35149171	3	4	514	1	0	0	0	0	1	0	0	0	835	536	19	1	181	1	AQR	15	35149171	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	1012027	35149171	67382221	51	29735											
LOXL1	4016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	74239485	74239485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	G	74239485	A	G	74239485	3	3	514	1	0	0	0	0	1	0	0	0	8906	159	6	3	1441	3	LOXL1	15	74239485	Missense_Mutation	SNP	A	TCGA-CJ-4907-01A-01D-1429-08	39090314	74239485	28291907	52	29736											
A2BP1	0	broad.mit.edu	37	16	7703894	7703894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	7703894	A	A	7703894	3	1	514	1	0	0	0	0	1	0	0	0	3	1145	40	1	960	1	A2BP1	16	7703894	Missense_Mutation	SNP	G	TCGA-CJ-4907-01A-01D-1429-08		7703894	82650859	53	29737											
ZC3H18	124245	broad.mit.edu;hgsc.bcm.edu	37	16	88697620	88697620	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	88697620	G	A	88697620	2	1	514	1	0	0	0	0	0	0	0	1	17580	1364	48	2		2	ZC3H18	16	88697620	Silent	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	80993726	88697620	1657133	54	29738											
MYST2	0	broad.mit.edu;hgsc.bcm.edu	37	17	47895315	47895315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	G	47895315	A	G	47895315	3	3	514	1	0	0	0	0	1	0	0	0	10110	449	16	3	1131	3	MYST2	17	47895315	Missense_Mutation	SNP	A	TCGA-CJ-4907-01A-01D-1429-08		47895315	33299895	55	29739											
PIK3C3	5289	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	39567803	39567803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	39567803	A	T	39567803	3	4	514	1	0	0	0	0	1	0	0	0	11919	217	8	5	577	5	PIK3C3	18	39567803	Missense_Mutation	SNP	A	TCGA-CJ-4907-01A-01D-1429-08		39567803	38509445	56	29740											
S1PR4	8698	broad.mit.edu	37	19	3179921	3179921	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	3179921	A	A	3179921	3	1	514	1	0	0	0	0	1	0	0	0	13809	709	25	4	1133	4	S1PR4	19	3179921	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08		3179921	55949062	57	29741											
PIP5K1C	23396	broad.mit.edu;hgsc.bcm.edu	37	19	3651895	3651895	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	3651895	C	A	3651895	2	1	514	1	0	0	0	0	0	0	0	1	11948	755	27	4		4	PIP5K1C	19	3651895	Silent	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	471974	3651895	55477088	58	29742											
PTPRS	5802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	5219380	5219380	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	G	5219380	C	G	5219380	2	3	514	1	0	0	0	0	0	0	0	1	12824	726	26	4		4	PTPRS	19	5219380	Silent	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	1567485	5219380	53909603	59	29743											
RPL18	6141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49119434	49119434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	49119434	C	T	49119434	3	4	514	1	0	0	0	0	1	0	0	0	13577	652	23	1	255	1	RPL18	19	49119434	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08	43900054	49119434	10009549	60	29744											
PREX1	57580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47258752	47258752	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	47258752	C	A	47258752	2	1	514	1	0	0	0	0	0	0	0	1	12486	610	22	4		4	PREX1	20	47258752	Silent	SNP	C	TCGA-CJ-4907-01A-01D-1429-08		47258752	15766768	61	29745											
CTCFL	140690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	56089655	56089655	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	A	56089655	G	A	56089655	2	1	514	1	0	0	0	0	0	0	0	1	4003	1078	38	1		1	CTCFL	20	56089655	Silent	SNP	G	TCGA-CJ-4907-01A-01D-1429-08	8830903	56089655	6935865	62	29746											
APOBEC3D	140564	hgsc.bcm.edu	37	22	39421110	39421112	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	-	39421112	CTT	-	39421110	7	5	514	1	0	1	0	1	0	0	0	0	792	805	28	0	256	0	APOBEC3D	22	39421110	In_Frame_Del	DEL	CTT	TCGA-CJ-4907-01A-01D-1429-08		39421110	11883456	63	29747											
SULT4A1	25830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	44237743	44237743	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	44237743	A	C	44237743	3	2	514	1	0	0	0	0	1	0	0	0	15395	217	8	5	639	5	SULT4A1	22	44237743	Missense_Mutation	SNP	A	TCGA-CJ-4907-01A-01D-1429-08	4816633	44237743	7066823	64	29748											
ACR	49	broad.mit.edu;hgsc.bcm.edu	37	22	51178394	51178394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	51178394	T	C	51178394	3	2	514	1	0	0	0	0	1	0	0	0	169	1406	49	3	564	3	ACR	22	51178394	Missense_Mutation	SNP	T	TCGA-CJ-4907-01A-01D-1429-08	6940651	51178394	126172	65	29749											
GNL3L	54552	broad.mit.edu;hgsc.bcm.edu	37	X	54585053	54585053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	T	54585053	C	T	54585053	3	4	514	1	0	0	0	0	1	0	0	0	6545	739	26	2	1685	2	GNL3L	23	54585053	Missense_Mutation	SNP	C	TCGA-CJ-4907-01A-01D-1429-08		54585053	100685507	66	29750											
NAP1L3	4675	hgsc.bcm.edu	37	X	92928035	92928036	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-4907-01A-01D-1429-08	TCGA-CJ-4907-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7c69fcb9-4b94-478a-bcb3-6ebd162d9482	37409a95-7e2f-42ee-ad41-b3f5b32c7236	C	92928036	-	C	92928035	7	5	514	1	0	1	1	0	0	0	0	0	10165	1203	42	0	1255	0	NAP1L3	23	92928035	Frame_Shift_Ins	INS	-	TCGA-CJ-4907-01A-01D-1429-08	38342982	92928035	62342525	67	29751											
ZMYM6	9204	broad.mit.edu;hgsc.bcm.edu	37	1	35457966	35457966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	35457966	A	T	35457966	3	4	515	1	0	0	0	0	1	0	0	0	17716	217	8	5	1970	5	ZMYM6	1	35457966	Missense_Mutation	SNP	A	TCGA-CJ-4908-01A-01D-1429-08		35457966	213792655	1	29752											
C1orf103	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111494480	111494480	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	111494480	A	T	111494480	2	4	515	1	0	0	0	0	0	0	0	1	1979	407	15	5		5	C1orf103	1	111494480	Silent	SNP	A	TCGA-CJ-4908-01A-01D-1429-08	76036514	111494480	137756141	2	29753											
IGFN1	91156	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201190737	201190737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	A	201190737	C	A	201190737	3	1	515	1	0	0	0	0	1	0	0	0	7597	507	18	4	10134	4	IGFN1	1	201190737	Missense_Mutation	SNP	C	TCGA-CJ-4908-01A-01D-1429-08	89696257	201190737	48059884	3	29754											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188297	10188297	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	-	10188297	T	-	10188297	7	5	515	1	0	1	0	1	0	0	0	0	17174	1493	52	0	446	0	VHL	3	10188297	Frame_Shift_Del	DEL	T	TCGA-CJ-4908-01A-01D-1429-08		10188297	187834133	4	29755											
TSEN2	80746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	12544895	12544895	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	C	12544895	A	C	12544895	3	2	515	1	0	0	0	0	1	0	0	0	16624	130	5	5	457	5	TSEN2	3	12544895	Missense_Mutation	SNP	A	TCGA-CJ-4908-01A-01D-1429-08	2356598	12544895	185477535	5	29756											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52661377	52661377	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	A	52661377	T	A	52661377	4	1	515	1	0	0	0	0	0	1	0	0	11498	1792	62	5	3519	5	PBRM1	3	52661377	Nonsense_Mutation	SNP	T	TCGA-CJ-4908-01A-01D-1429-08	40116482	52661377	145361053	6	29757											
ARHGEF3	50650	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	56779390	56779390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	G	56779390	A	G	56779390	3	3	515	1	0	0	0	0	1	0	0	0	904	420	15	3	883	3	ARHGEF3	3	56779390	Missense_Mutation	SNP	A	TCGA-CJ-4908-01A-01D-1429-08	4118013	56779390	141243040	7	29758											
FGFR3	2261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	1807850	1807850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	1807850	G	T	1807850	3	4	515	1	0	0	0	0	1	0	0	0	5874	1116	39	4	2114	4	FGFR3	4	1807850	Missense_Mutation	SNP	G	TCGA-CJ-4908-01A-01D-1429-08		1807850	189346426	8	29759											
ACTBL2	345651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	56778275	56778275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	A	56778275	C	A	56778275	3	1	515	1	0	0	0	0	1	0	0	0	194	595	21	4	874	4	ACTBL2	5	56778275	Missense_Mutation	SNP	C	TCGA-CJ-4908-01A-01D-1429-08		56778275	124136985	9	29760											
ZSCAN16	80345	hgsc.bcm.edu;ucsc.edu	37	6	28097728	28097729	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	-	28097729	AT	-	28097728	7	5	515	1	0	1	0	1	0	0	0	0	18241	108	4	0	1057	0	ZSCAN16	6	28097728	Frame_Shift_Del	DEL	AT	TCGA-CJ-4908-01A-01D-1429-08		28097728	143017339	10	29761											
RDBP	7936	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	31922556	31922556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	G	31922556	C	G	31922556	3	3	515	1	0	0	0	0	1	0	0	0	13201	768	27	4	644	4	RDBP	6	31922556	Missense_Mutation	SNP	C	TCGA-CJ-4908-01A-01D-1429-08	3824828	31922556	139192511	11	29762											
SLC35A1	10559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	88210968	88210968	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	C	88210968	T	C	88210968	2	2	515	1	0	0	0	0	0	0	0	1	14583	1751	61	3		3	SLC35A1	6	88210968	Silent	SNP	T	TCGA-CJ-4908-01A-01D-1429-08	56288412	88210968	82904099	12	29763											
NUP205	23165	hgsc.bcm.edu;ucsc.edu	37	7	135292022	135292022	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	-	135292022	T	-	135292022	7	5	515	1	0	1	0	1	0	0	0	0	10766	1609	56	0	3184	0	NUP205	7	135292022	Frame_Shift_Del	DEL	T	TCGA-CJ-4908-01A-01D-1429-08		135292022	23846641	13	29764											
VPS28	51160	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145649316	145649316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	C	145649316	A	C	145649316	3	2	515	1	0	0	0	0	1	0	0	0	17211	188	7	5	131	5	VPS28	8	145649316	Missense_Mutation	SNP	A	TCGA-CJ-4908-01A-01D-1429-08		145649316	714706	14	29765											
SEMA4D	10507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	92008488	92008488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	A	92008488	G	A	92008488	3	1	515	1	0	0	0	0	1	0	0	0	14047	1174	41	2	2701	2	SEMA4D	9	92008488	Missense_Mutation	SNP	G	TCGA-CJ-4908-01A-01D-1429-08		92008488	49204943	15	29766											
CUBN	8029	broad.mit.edu;hgsc.bcm.edu	37	10	16882524	16882524	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	G	16882524	A	G	16882524	2	3	515	1	0	0	0	0	0	0	0	1	4053	146	6	3		3	CUBN	10	16882524	Silent	SNP	A	TCGA-CJ-4908-01A-01D-1429-08		16882524	118652223	16	29767											
C10orf79	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	105942200	105942200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	105942200	G	T	105942200	3	4	515	1	0	0	0	0	1	0	0	0	1620	1203	42	4	2872	4	C10orf79	10	105942200	Missense_Mutation	SNP	G	TCGA-CJ-4908-01A-01D-1429-08	89059676	105942200	29592547	17	29768											
CNGA4	1262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6262833	6262833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	A	6262833	C	A	6262833	3	1	515	1	0	0	0	0	1	0	0	0	3601	796	28	4	1108	4	CNGA4	11	6262833	Missense_Mutation	SNP	C	TCGA-CJ-4908-01A-01D-1429-08		6262833	128743683	18	29769											
MRVI1	10335	broad.mit.edu	37	11	10647673	10647673	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	A	10647673	A	A	10647673	3	1	515	1	0	0	0	0	1	0	0	0	9860	739	26	4	1582	4	MRVI1	11	10647673	Missense_Mutation	SNP	C	TCGA-CJ-4908-01A-01D-1429-08	4384840	10647673	124358843	19	29770											
ADRBK1	156	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	67050628	67050628	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	C	67050628	T	C	67050628	2	2	515	1	0	0	0	0	0	0	0	1	343	1567	55	3		3	ADRBK1	11	67050628	Silent	SNP	T	TCGA-CJ-4908-01A-01D-1429-08	56402955	67050628	67955888	20	29771											
DDX10	1662	broad.mit.edu;hgsc.bcm.edu	37	11	108810996	108810996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	C	108810996	T	C	108810996	3	2	515	1	0	0	0	0	1	0	0	0	4344	1464	51	3	2544	3	DDX10	11	108810996	Missense_Mutation	SNP	T	TCGA-CJ-4908-01A-01D-1429-08	41760368	108810996	26195520	21	29772											
C12orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49047945	49047945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	C	49047945	A	C	49047945	3	2	515	1	0	0	0	0	1	0	0	0	1689	217	8	5	121	5	C12orf41	12	49047945	Missense_Mutation	SNP	A	TCGA-CJ-4908-01A-01D-1429-08		49047945	84803950	22	29773											
ABCA3	21	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2328063	2328063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	2328063	C	T	2328063	3	4	515	1	0	0	0	0	1	0	0	0	33	864	30	2	400	2	ABCA3	16	2328063	Missense_Mutation	SNP	C	TCGA-CJ-4908-01A-01D-1429-08		2328063	88026690	23	29774											
SUPT6H	6830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27023953	27023953	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	C	27023953	T	C	27023953	2	2	515	1	0	0	0	0	0	0	0	1	15412	1461	51	3		3	SUPT6H	17	27023953	Silent	SNP	T	TCGA-CJ-4908-01A-01D-1429-08		27023953	54171257	24	29775											
ACACA	31	broad.mit.edu;hgsc.bcm.edu	37	17	35581913	35581913	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	35581913	C	T	35581913	2	4	515	1	0	0	0	0	0	0	0	1	106	695	24	2		2	ACACA	17	35581913	Silent	SNP	C	TCGA-CJ-4908-01A-01D-1429-08	8557960	35581913	45613297	25	29776											
KIAA1267	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	44248412	44248412	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	C	44248412	T	C	44248412	2	2	515	1	0	0	0	0	0	0	0	1	8226	1654	58	3		3	KIAA1267	17	44248412	Silent	SNP	T	TCGA-CJ-4908-01A-01D-1429-08	8666499	44248412	36946798	26	29777											
SCRN2	90507	broad.mit.edu;ucsc.edu	37	17	45918176	45918176	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	45918176	T	T	45918176	3	4	515	1	0	0	0	0	1	0	0	0	13952	188	7	5	1289	5	SCRN2	17	45918176	Missense_Mutation	SNP	A	TCGA-CJ-4908-01A-01D-1429-08	1669764	45918176	35277034	27	29778											
MXRA7	439921	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74673741	74673741	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	G	74673741	C	G	74673741	3	3	515	1	0	0	0	0	1	0	0	0	10011	913	32	4	74	4	MXRA7	17	74673741	Missense_Mutation	SNP	C	TCGA-CJ-4908-01A-01D-1429-08	28755565	74673741	6521469	28	29779											
MLLT1	4298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6270745	6270745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	6270745	A	T	6270745	3	4	515	1	0	0	0	0	1	0	0	0	9632	188	7	5	1685	5	MLLT1	19	6270745	Missense_Mutation	SNP	A	TCGA-CJ-4908-01A-01D-1429-08		6270745	52858238	29	29780											
ACSS2	55902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33500951	33500951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	33500951	G	T	33500951	3	4	515	1	0	0	0	0	1	0	0	0	189	1261	44	4	437	4	ACSS2	20	33500951	Missense_Mutation	SNP	G	TCGA-CJ-4908-01A-01D-1429-08		33500951	29524569	30	29781											
COL18A1	80781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	46912469	46912469	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	A	46912469	G	A	46912469	2	1	515	1	0	0	0	0	0	0	0	1	3677	1103	39	1		1	COL18A1	21	46912469	Silent	SNP	G	TCGA-CJ-4908-01A-01D-1429-08		46912469	1217426	31	29782											
VSIG1	340547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	107319363	107319363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4908-01A-01D-1429-08	TCGA-CJ-4908-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbc5420c-5c60-4d1e-8554-9d2f6e55c502	19effa42-4c58-4a24-9cd0-264cf686c9dc	T	107319363	A	T	107319363	3	4	515	1	0	0	0	0	1	0	0	0	17234	217	8	5	879	5	VSIG1	23	107319363	Missense_Mutation	SNP	A	TCGA-CJ-4908-01A-01D-1429-08		107319363	47951197	32	29783											
KLHL21	9903	broad.mit.edu;hgsc.bcm.edu	37	1	6655551	6655551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	6655551	C	T	6655551	3	4	516	1	0	0	0	0	1	0	0	0	8383	826	29	2	307	2	KLHL21	1	6655551	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08		6655551	242595070	1	29784											
CLSTN1	22883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	9809930	9809930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	9809930	G	T	9809930	3	4	516	1	0	0	0	0	1	0	0	0	3563	1377	48	4	2310	4	CLSTN1	1	9809930	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	3154379	9809930	239440691	2	29785											
ARID1A	8289	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	27107213	27107213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	27107213	T	C	27107213	3	2	516	1	0	0	0	0	1	0	0	0	913	1493	52	3	6902	3	ARID1A	1	27107213	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	17297283	27107213	222143408	3	29786											
SLC9A1	6548	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	27440753	27440753	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	27440753	G	C	27440753	4	2	516	1	0	0	0	0	0	1	0	0	14722	1294	45	4	2114	4	SLC9A1	1	27440753	Nonsense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	333540	27440753	221809868	4	29787											
CSMD2	114784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	34052715	34052715	+	Missense_Mutation	SNP	C	C	T	rs143826784		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	34052715	C	T	34052715	3	4	516	1	0	0	0	0	1	0	0	0	3947	536	19	1	3643	1	CSMD2	1	34052715	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	6611962	34052715	215197906	5	29788											
ZMYM1	79830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35580008	35580008	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	35580008	C	A	35580008	2	1	516	1	0	0	0	0	0	0	0	1	17711	900	32	4		4	ZMYM1	1	35580008	Silent	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	1527293	35580008	213670613	6	29789											
BCAR3	8412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94048304	94048304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	94048304	T	C	94048304	3	2	516	1	0	0	0	0	1	0	0	0	1349	1821	63	3	1261	3	BCAR3	1	94048304	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	58468296	94048304	155202317	7	29790											
BCAR3	8412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94048425	94048425	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	94048425	G	T	94048425	2	4	516	1	0	0	0	0	0	0	0	1	1349	1219	43	4		4	BCAR3	1	94048425	Silent	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	121	94048425	155202196	8	29791											
NOTCH2	4853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	120468210	120468210	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	120468210	C	T	120468210	2	4	516	1	0	0	0	0	0	0	0	1	10555	768	27	1		1	NOTCH2	1	120468210	Silent	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	26419785	120468210	128782411	9	29792											
RC3H1	149041	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	173934019	173934019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	173934019	A	G	173934019	3	3	516	1	0	0	0	0	1	0	0	0	13179	449	16	3	1871	3	RC3H1	1	173934019	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	53465809	173934019	75316602	10	29793											
RNASEL	6041	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	182544563	182544563	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	182544563	A	G	182544563	2	3	516	1	0	0	0	0	0	0	0	1	13429	175	7	3		3	RNASEL	1	182544563	Silent	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	8610544	182544563	66706058	11	29794											
EMILIN1	11117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27307380	27307380	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	27307380	G	C	27307380	3	2	516	1	0	0	0	0	1	0	0	0	5095	991	35	4	2556	4	EMILIN1	2	27307380	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08		27307380	215891993	12	29795											
KCNH7	90134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	163236424	163236424	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	163236424	T	G	163236424	3	3	516	1	0	0	0	0	1	0	0	0	8044	1609	56	5	532	5	KCNH7	2	163236424	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	135929044	163236424	79962949	13	29796											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179427281	179427281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	179427281	C	G	179427281	3	3	516	1	0	0	0	0	1	0	0	0	16747	565	20	4	24549	4	TTN	2	179427281	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	16190857	179427281	63772092	14	29797											
RNPEPL1	57140	broad.mit.edu	37	2	241514017	241514017	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	241514017	T	T	241514017	2	4	516	1	0	0	0	0	0	0	0	1	13523	813	29	2		2	RNPEPL1	2	241514017	Silent	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	62086736	241514017	1685356	15	29798											
CAMK1	8536	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9809372	9809383	+	In_Frame_Del	DEL	TCGTAGATGTCT	TCGTAGATGTCT	-	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	TCGTAGATGTCT	TCGTAGATGTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	-	9809383	TCGTAGATGTCT	-	9809372	7	5	516	1	0	1	0	1	0	0	0	0	2598	1667	58	0	1094	0	CAMK1	3	9809372	In_Frame_Del	DEL	TCGTAGATGTCT	TCGA-CJ-4912-01A-01D-1429-08		9809372	188213058	16	29799											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188204	10188204	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	-	10188204	T	-	10188204	7	5	516	1	0	1	0	1	0	0	0	0	17174	1609	56	0	353	0	VHL	3	10188204	Frame_Shift_Del	DEL	T	TCGA-CJ-4912-01A-01D-1429-08	378832	10188204	187834226	17	29800											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52621512	52621515	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	ACAA	ACAA	ACAA	-	ACAA	ACAA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	-	52621515	ACAA	-	52621512	7	5	516	1	0	1	0	1	0	0	0	0	11498	391	14	0	1968	0	PBRM1	3	52621512	Frame_Shift_Del	DEL	ACAA	TCGA-CJ-4912-01A-01D-1429-08	42433308	52621512	145400918	18	29801											
FAM19A4	151647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	68802104	68802104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	68802104	G	A	68802104	3	1	516	1	0	0	0	0	1	0	0	0	5538	1116	39	1	238	1	FAM19A4	3	68802104	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	16180592	68802104	129220326	19	29802											
TNIK	23043	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	170893117	170893117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	170893117	G	A	170893117	3	1	516	1	0	0	0	0	1	0	0	0	16325	942	33	2	3485	2	TNIK	3	170893117	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	102091013	170893117	27129313	20	29803											
LRRC33	375387	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	196387275	196387275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	196387275	C	T	196387275	3	4	516	1	0	0	0	0	1	0	0	0	8995	536	19	1	767	1	LRRC33	3	196387275	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	25494158	196387275	1635155	21	29804											
WDFY3	23001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	85664902	85664902	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	85664902	G	A	85664902	2	1	516	1	0	0	0	0	0	0	0	1	17282	1372	48	2		2	WDFY3	4	85664902	Silent	SNP	G	TCGA-CJ-4912-01A-01D-1429-08		85664902	105489374	22	29805											
BANK1	55024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	102751087	102751087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	102751087	T	A	102751087	3	1	516	1	0	0	0	0	1	0	0	0	1309	1841	64	5	199	5	BANK1	4	102751087	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	17086185	102751087	88403189	23	29806											
BDH2	56898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	104000886	104000886	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	104000886	G	T	104000886	2	4	516	1	0	0	0	0	0	0	0	1	1391	1277	45	4		4	BDH2	4	104000886	Silent	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	1249799	104000886	87153390	24	29807											
MYO10	4651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	16711272	16711272	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	16711272	G	C	16711272	3	2	516	1	0	0	0	0	1	0	0	0	10069	971	34	4	4252	4	MYO10	5	16711272	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08		16711272	164203988	25	29808											
HEATR7B2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	41065513	41065513	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	41065513	T	G	41065513	3	3	516	1	0	0	0	0	1	0	0	0	7042	1783	62	5	4632	5	HEATR7B2	5	41065513	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	24354241	41065513	139849747	26	29809											
IPO11	51194	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	61779118	61779118	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	61779118	A	C	61779118	3	2	516	1	0	0	0	0	1	0	0	0	7800	246	9	5	1177	5	IPO11	5	61779118	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	20713605	61779118	119136142	27	29810											
MCCC2	64087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	70945080	70945080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	70945080	G	A	70945080	3	1	516	1	0	0	0	0	1	0	0	0	9382	1014	35	2	1427	2	MCCC2	5	70945080	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	9165962	70945080	109970180	28	29811											
RAD50	10111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131930637	131930637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	131930637	A	G	131930637	3	3	516	1	0	0	0	0	1	0	0	0	12997	188	7	3	1916	3	RAD50	5	131930637	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	60985557	131930637	48984623	29	29812											
ADRB2	154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	148207220	148207220	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	148207220	G	C	148207220	3	2	516	1	0	0	0	0	1	0	0	0	341	1000	35	4	828	4	ADRB2	5	148207220	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	16276583	148207220	32708040	30	29813											
NSD1	64324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176562309	176562309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	176562309	T	C	176562309	3	2	516	1	0	0	0	0	1	0	0	0	10676	1754	61	3	207	3	NSD1	5	176562309	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	28355089	176562309	4352951	31	29814											
RMND5B	64777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	177574549	177574549	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	-	177574549	T	-	177574549	7	5	516	1	0	1	0	1	0	0	0	0	13411	1702	59	0	902	0	RMND5B	5	177574549	Frame_Shift_Del	DEL	T	TCGA-CJ-4912-01A-01D-1429-08	1012240	177574549	3340711	32	29815											
SYCP2L	221711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	10907856	10907856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	10907856	G	C	10907856	3	2	516	1	0	0	0	0	1	0	0	0	15445	1357	47	4	796	4	SYCP2L	6	10907856	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08		10907856	160207211	33	29816											
FAM83B	222584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	54805594	54805594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	54805594	C	T	54805594	3	4	516	1	0	0	0	0	1	0	0	0	5641	507	18	2	1839	2	FAM83B	6	54805594	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	43897738	54805594	116309473	34	29817											
ZNF292	23036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	87969169	87969169	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	87969169	A	C	87969169	3	2	516	1	0	0	0	0	1	0	0	0	17838	130	5	5	5852	5	ZNF292	6	87969169	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	33163575	87969169	83145898	35	29818											
AKAP7	9465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	131540937	131540937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	131540937	C	A	131540937	3	1	516	1	0	0	0	0	1	0	0	0	456	855	30	4	795	4	AKAP7	6	131540937	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	43571768	131540937	39574130	36	29819											
FAM54A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	136562720	136562720	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	136562720	C	G	136562720	3	3	516	1	0	0	0	0	1	0	0	0	5589	922	32	4	797	4	FAM54A	6	136562720	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	5021783	136562720	34552347	37	29820											
IGF2R	3482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160471666	160471666	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	160471666	C	T	160471666	2	4	516	1	0	0	0	0	0	0	0	1	7583	900	32	2		2	IGF2R	6	160471666	Silent	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	23908946	160471666	10643401	38	29821											
ZNF713	349075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	56007482	56007482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	56007482	G	A	56007482	3	1	516	1	0	0	0	0	1	0	0	0	18129	1377	48	2	1090	2	ZNF713	7	56007482	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08		56007482	103131181	39	29822											
GTF2I	2969	hgsc.bcm.edu	37	7	74149837	74149840	+	Frame_Shift_Del	DEL	AAGA	AAGA	-	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	AAGA	AAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	-	74149840	AAGA	-	74149837	7	5	516	1	0	1	0	1	0	0	0	0	6874	359	13	0	1460	0	GTF2I	7	74149837	Frame_Shift_Del	DEL	AAGA	TCGA-CJ-4912-01A-01D-1429-08	18142355	74149837	84988826	40	29823											
COL1A2	1278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94050324	94050324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	94050324	C	A	94050324	3	1	516	1	0	0	0	0	1	0	0	0	3680	855	30	4	2449	4	COL1A2	7	94050324	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	19900487	94050324	65088339	41	29824											
LMTK2	22853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	97766647	97766647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	97766647	G	A	97766647	3	1	516	1	0	0	0	0	1	0	0	0	8866	943	33	2	130	2	LMTK2	7	97766647	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	3716323	97766647	61372016	42	29825											
RBM28	55131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127961369	127961369	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	127961369	T	A	127961369	4	1	516	1	0	0	0	0	0	1	0	0	13141	1850	64	5	790	5	RBM28	7	127961369	Nonsense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	30194722	127961369	31177294	43	29826											
SVOPL	136306	broad.mit.edu;hgsc.bcm.edu	37	7	138333763	138333763	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	138333763	G	T	138333763	2	4	516	1	0	0	0	0	0	0	0	1	15436	987	35	4		4	SVOPL	7	138333763	Silent	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	10372394	138333763	20804900	44	29827											
UBN2	254048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	138944050	138944050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	138944050	A	G	138944050	3	3	516	1	0	0	0	0	1	0	0	0	16905	72	3	3	857	3	UBN2	7	138944050	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	610287	138944050	20194613	45	29828											
CUL1	8454	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	148454216	148454216	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	148454216	C	T	148454216	4	4	516	1	0	0	0	0	0	1	0	0	4056	528	19	1	467	1	CUL1	7	148454216	Nonsense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	9510166	148454216	10684447	46	29829											
MYBL1	4603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67484765	67484765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	67484765	C	A	67484765	3	1	516	1	0	0	0	0	1	0	0	0	10016	912	32	4	598	4	MYBL1	8	67484765	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08		67484765	78879257	47	29830											
ARFGEF1	10565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	68111271	68111271	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	68111271	A	G	68111271	2	3	516	1	0	0	0	0	0	0	0	1	852	242	9	3		3	ARFGEF1	8	68111271	Silent	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	626506	68111271	78252751	48	29831											
KANK1	23189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	732501	732501	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	732501	T	C	732501	2	2	516	1	0	0	0	0	0	0	0	1	7983	1538	54	3		3	KANK1	9	732501	Silent	SNP	T	TCGA-CJ-4912-01A-01D-1429-08		732501	140480930	49	29832											
RABGAP1	23637	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125782628	125782628	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	125782628	T	C	125782628	2	2	516	1	0	0	0	0	0	0	0	1	12977	1606	56	3		3	RABGAP1	9	125782628	Silent	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	125050127	125782628	15430803	50	29833											
C9orf163	158055	broad.mit.edu	37	9	139379131	139379131	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	139379131	A	A	139379131	2	1	516	1	0	0	0	0	0	0	0	1	2469	962	34	2		2	C9orf163	9	139379131	Silent	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	13596503	139379131	1834300	51	29834											
PRTFDC1	56952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	25145923	25145923	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	25145923	T	G	25145923	3	3	516	1	0	0	0	0	1	0	0	0	12647	1449	50	5	268	5	PRTFDC1	10	25145923	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08		25145923	110388824	52	29835											
GBF1	8729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	104126846	104126846	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	104126846	G	C	104126846	3	2	516	1	0	0	0	0	1	0	0	0	6278	1377	48	4	2509	4	GBF1	10	104126846	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	78980923	104126846	31407901	53	29836											
SEC23IP	11196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	121657969	121657969	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	121657969	G	C	121657969	3	2	516	1	0	0	0	0	1	0	0	0	14006	971	34	4	200	4	SEC23IP	10	121657969	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	17531123	121657969	13876778	54	29837											
GPR123	84435	broad.mit.edu;hgsc.bcm.edu	37	10	134942620	134942620	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	134942620	C	G	134942620	3	3	516	1	0	0	0	0	1	0	0	0	6644	623	22	4	1310	4	GPR123	10	134942620	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	13284651	134942620	592127	55	29838											
ZNF215	7762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6953811	6953811	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	6953811	A	C	6953811	3	2	516	1	0	0	0	0	1	0	0	0	17783	246	9	5	310	5	ZNF215	11	6953811	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08		6953811	128052705	56	29839											
SLC5A12	159963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	26718743	26718743	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	26718743	A	G	26718743	2	3	516	1	0	0	0	0	0	0	0	1	14677	1	1	3		3	SLC5A12	11	26718743	Silent	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	19764932	26718743	108287773	57	29840											
NUP160	23279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47827752	47827752	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	47827752	A	C	47827752	3	2	516	1	0	0	0	0	1	0	0	0	10764	98	4	5	1819	5	NUP160	11	47827752	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	21109009	47827752	87178764	58	29841											
ZDHHC5	25921	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57457522	57457522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	57457522	C	T	57457522	3	4	516	1	0	0	0	0	1	0	0	0	17630	623	22	2	418	2	ZDHHC5	11	57457522	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	9629770	57457522	77548994	59	29842											
SHANK2	22941	broad.mit.edu;hgsc.bcm.edu	37	11	70338536	70338536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	70338536	G	T	70338536	3	4	516	1	0	0	0	0	1	0	0	0	14278	987	35	4	3226	4	SHANK2	11	70338536	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	12881014	70338536	64667980	60	29843											
MPZL2	10205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118133279	118133279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	118133279	A	G	118133279	3	3	516	1	0	0	0	0	1	0	0	0	9757	391	14	3	349	3	MPZL2	11	118133279	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	47794743	118133279	16873237	61	29844											
MLL	4297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118370617	118370617	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	118370617	T	A	118370617	2	1	516	1	0	0	0	0	0	0	0	1	9627	1509	53	5		5	MLL	11	118370617	Silent	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	237338	118370617	16635899	62	29845											
WNK1	65125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	936351	936351	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	936351	G	C	936351	3	2	516	1	0	0	0	0	1	0	0	0	17389	1203	42	4	1086	4	WNK1	12	936351	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08		936351	132915544	63	29846											
FOXM1	2305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	2983386	2983386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	2983386	T	A	2983386	3	1	516	1	0	0	0	0	1	0	0	0	6025	1464	51	5	2182	5	FOXM1	12	2983386	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	2047035	2983386	130868509	64	29847											
DUSP16	80824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	12629998	12629998	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	12629998	A	T	12629998	2	4	516	1	0	0	0	0	0	0	0	1	4818	59	3	5		5	DUSP16	12	12629998	Silent	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	9646612	12629998	121221897	65	29848											
TRPC4	7223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	38266299	38266299	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	38266299	C	T	38266299	2	4	516	1	0	0	0	0	0	0	0	1	16592	465	17	2		2	TRPC4	13	38266299	Silent	SNP	C	TCGA-CJ-4912-01A-01D-1429-08		38266299	76903579	66	29849											
C13orf1	0	broad.mit.edu;hgsc.bcm.edu	37	13	50489191	50489191	+	RNA	SNP	A	A	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	50489191	A	G	50489191	1	3	516	0	1	0	0	0	0	0	0	0	1719	145	5	3		3	C13orf1	13	50489191	RNA	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	12222892	50489191	64680687	67	29850											
RBM26	64062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	79940847	79940847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	79940847	A	C	79940847	3	2	516	1	0	0	0	0	1	0	0	0	13139	242	9	5	1946	5	RBM26	13	79940847	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	29451656	79940847	35229031	68	29851											
ACOT1	641371	hgsc.bcm.edu	37	14	74009978	74009978	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	-	74009978	C	-	74009978	7	5	516	1	0	1	0	1	0	0	0	0	148	842	30	0	895	0	ACOT1	14	74009978	Frame_Shift_Del	DEL	C	TCGA-CJ-4912-01A-01D-1429-08		74009978	33339562	69	29852											
ACOT2	10965	hgsc.bcm.edu	37	14	74041836	74041836	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	-	74041836	C	-	74041836	7	5	516	1	0	1	0	1	0	0	0	0	152	842	30	0	1081	0	ACOT2	14	74041836	Frame_Shift_Del	DEL	C	TCGA-CJ-4912-01A-01D-1429-08	31858	74041836	33307704	70	29853											
WDR93	56964	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90276288	90276288	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	90276288	T	A	90276288	3	1	516	1	0	0	0	0	1	0	0	0	17352	1493	52	5	1428	5	WDR93	15	90276288	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08		90276288	12255104	71	29854											
TBC1D24	57465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2549923	2549923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	2549923	G	A	2549923	3	1	516	1	0	0	0	0	1	0	0	0	15626	1377	48	2	1290	2	TBC1D24	16	2549923	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08		2549923	87804830	72	29855											
TMEM208	29100	broad.mit.edu	37	16	67261756	67261756	+	Silent	SNP	C	T	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	67261756	T	T	67261756	2	4	516	1	0	0	0	0	0	0	0	1	16145	697	25	2		2	TMEM208	16	67261756	Silent	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	64711833	67261756	23092997	73	29856											
CNTNAP4	85445	broad.mit.edu;hgsc.bcm.edu	37	16	76495979	76495979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	76495979	C	T	76495979	3	4	516	1	0	0	0	0	1	0	0	0	3651	893	31	1	1507	1	CNTNAP4	16	76495979	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	9234223	76495979	13858774	74	29857											
ACTG1	71	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	79478982	79478982	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	79478982	G	C	79478982	2	2	516	1	0	0	0	0	0	0	0	1	196	962	34	4		4	ACTG1	17	79478982	Silent	SNP	G	TCGA-CJ-4912-01A-01D-1429-08		79478982	1716228	75	29858											
DSG4	147409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	28972163	28972163	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	28972163	C	T	28972163	4	4	516	1	0	0	0	0	0	1	0	0	4781	528	19	1	895	1	DSG4	18	28972163	Nonsense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08		28972163	49105085	76	29859											
SLC14A2	8170	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	43212331	43212331	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	43212331	G	T	43212331	4	4	516	1	0	0	0	0	0	1	0	0	14410	1001	35	4	552	4	SLC14A2	18	43212331	Nonsense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08	14240168	43212331	34864917	77	29860											
ZNF560	147741	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9578075	9578075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	9578075	A	C	9578075	3	2	516	1	0	0	0	0	1	0	0	0	18003	359	13	5	828	5	ZNF560	19	9578075	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08		9578075	49550908	78	29861											
EMR3	84658	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14755050	14755050	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	14755050	C	T	14755050	4	4	516	1	0	0	0	0	0	1	0	0	5108	595	21	2	1070	2	EMR3	19	14755050	Nonsense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	5176975	14755050	44373933	79	29862											
ZNF429	353088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	21719682	21719682	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	21719682	A	C	21719682	3	2	516	1	0	0	0	0	1	0	0	0	17914	72	3	5	841	5	ZNF429	19	21719682	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	6964632	21719682	37409301	80	29863											
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	31767620	31767620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	31767620	T	C	31767620	3	2	516	1	0	0	0	0	1	0	0	0	16637	1850	64	3	170	3	TSHZ3	19	31767620	Missense_Mutation	SNP	T	TCGA-CJ-4912-01A-01D-1429-08	10047938	31767620	27361363	81	29864											
TMEM149	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36230813	36230813	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	36230813	C	T	36230813	2	4	516	1	0	0	0	0	0	0	0	1	16074	593	21	2		2	TMEM149	19	36230813	Silent	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	4463193	36230813	22898170	82	29865											
GGN	199720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38876071	38876071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	T	38876071	C	T	38876071	3	4	516	1	0	0	0	0	1	0	0	0	6365	536	19	1	135	1	GGN	19	38876071	Missense_Mutation	SNP	C	TCGA-CJ-4912-01A-01D-1429-08	2645258	38876071	20252912	83	29866											
PLAGL2	5326	broad.mit.edu;hgsc.bcm.edu	37	20	30784502	30784502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	A	30784502	G	A	30784502	3	1	516	1	0	0	0	0	1	0	0	0	12027	1174	41	2	250	2	PLAGL2	20	30784502	Missense_Mutation	SNP	G	TCGA-CJ-4912-01A-01D-1429-08		30784502	32241018	84	29867											
CCDC157	550631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30766638	30766638	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	30766638	C	G	30766638	2	3	516	1	0	0	0	0	0	0	0	1	2791	668	24	4		4	CCDC157	22	30766638	Silent	SNP	C	TCGA-CJ-4912-01A-01D-1429-08		30766638	20537928	85	29868											
TNRC6B	23112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	40662303	40662303	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	C	40662303	A	C	40662303	3	2	516	1	0	0	0	0	1	0	0	0	16353	14	1	5	2208	5	TNRC6B	22	40662303	Missense_Mutation	SNP	A	TCGA-CJ-4912-01A-01D-1429-08	9895665	40662303	10642263	86	29869											
MAOA	4128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	43571993	43571993	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4912-01A-01D-1429-08	TCGA-CJ-4912-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	894ade93-8feb-4f93-a31a-d9e16eb81743	fa597cce-bae4-49b7-8d02-d00582f821f0	G	43571993	A	G	43571993	2	3	516	1	0	0	0	0	0	0	0	1	9232	98	4	3		3	MAOA	23	43571993	Silent	SNP	A	TCGA-CJ-4912-01A-01D-1429-08		43571993	111698567	87	29870											
RPL22	6146	hgsc.bcm.edu	37	1	6246851	6246852	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	6246852	-	T	6246851	7	5	517	1	0	1	1	0	0	0	0	0	13581	449	16	0	122	0	RPL22	1	6246851	Frame_Shift_Ins	INS	-	TCGA-CJ-4913-01A-01D-1429-08		6246851	243003770	1	29871											
PGD	5226	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10477169	10477169	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	10477169	C	A	10477169	2	1	517	1	0	0	0	0	0	0	0	1	11794	875	31	4		4	PGD	1	10477169	Silent	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	4230318	10477169	238773452	2	29872											
CELA3B	23436	broad.mit.edu	37	1	22310726	22310726	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	22310726	A	A	22310726	3	1	517	1	0	0	0	0	1	0	0	0	3216	1261	44	2	566	2	CELA3B	1	22310726	Missense_Mutation	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	11833557	22310726	226939895	3	29873											
SLC44A5	204962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	75708659	75708659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	C	75708659	T	C	75708659	3	2	517	1	0	0	0	0	1	0	0	0	14652	1406	49	3	1955	3	SLC44A5	1	75708659	Missense_Mutation	SNP	T	TCGA-CJ-4913-01A-01D-1429-08	53397933	75708659	173541962	4	29874											
TAF5L	27097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	229730773	229730773	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	C	229730773	G	C	229730773	3	2	517	1	0	0	0	0	1	0	0	0	15541	1310	46	4	732	4	TAF5L	1	229730773	Missense_Mutation	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	154022114	229730773	19519848	5	29875											
LPIN1	23175	broad.mit.edu;hgsc.bcm.edu	37	2	11911528	11911528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	11911528	C	T	11911528	3	4	517	1	0	0	0	0	1	0	0	0	8925	623	22	2	329	2	LPIN1	2	11911528	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		11911528	231287845	6	29876											
MRPS5	64969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	95780928	95780928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	C	95780928	T	C	95780928	3	2	517	1	0	0	0	0	1	0	0	0	9853	1725	60	3	1172	3	MRPS5	2	95780928	Missense_Mutation	SNP	T	TCGA-CJ-4913-01A-01D-1429-08	83869400	95780928	147418445	7	29877											
RNPEPL1	57140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	241516160	241516160	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	241516160	G	A	241516160	2	1	517	1	0	0	0	0	0	0	0	1	13523	1335	47	2		2	RNPEPL1	2	241516160	Silent	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	145735232	241516160	1683213	8	29878											
COL7A1	1294	broad.mit.edu	37	3	48612153	48612153	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	48612153	A	A	48612153	3	1	517	1	0	0	0	0	1	0	0	0	3706	637	22	4	2652	4	COL7A1	3	48612153	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		48612153	149410277	9	29879											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52621446	52621446	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	52621446	C	A	52621446	4	1	517	1	0	0	0	0	0	1	0	0	11498	922	32	4	1902	4	PBRM1	3	52621446	Nonsense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	4009293	52621446	145400984	10	29880											
TFDP2	7029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	141692908	141692908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	G	141692908	C	G	141692908	3	3	517	1	0	0	0	0	1	0	0	0	15810	680	24	4	719	4	TFDP2	3	141692908	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	89071462	141692908	56329522	11	29881											
D4S234E	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	4389419	4389419	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	G	4389419	C	G	4389419	2	3	517	1	0	0	0	0	0	0	0	1	4216	784	28	4		4	D4S234E	4	4389419	Silent	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		4389419	186764857	12	29882											
FBXO38	81545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	147778625	147778625	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	147778625	G	A	147778625	2	1	517	1	0	0	0	0	0	0	0	1	5753	1277	45	2		2	FBXO38	5	147778625	Silent	SNP	G	TCGA-CJ-4913-01A-01D-1429-08		147778625	33136635	13	29883											
OR5V1	81696	broad.mit.edu;hgsc.bcm.edu	37	6	29323588	29323588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	29323588	G	A	29323588	3	1	517	1	0	0	0	0	1	0	0	0	11191	1174	41	2	583	2	OR5V1	6	29323588	Missense_Mutation	SNP	G	TCGA-CJ-4913-01A-01D-1429-08		29323588	141791479	14	29884											
DAXX	1616	broad.mit.edu;ucsc.edu	37	6	33289504	33289504	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	33289504	T	T	33289504	3	4	517	1	0	0	0	0	1	0	0	0	4245	43	2	5	2051	5	DAXX	6	33289504	Missense_Mutation	SNP	A	TCGA-CJ-4913-01A-01D-1429-08	3965916	33289504	137825563	15	29885											
BACH2	60468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90647879	90647879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	90647879	C	T	90647879	3	4	517	1	0	0	0	0	1	0	0	0	1284	478	17	2	506	2	BACH2	6	90647879	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	57358375	90647879	80467188	16	29886											
LOC402644	402644	broad.mit.edu	37	7	28319099	28319099	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	28319099	T	T	28319099	3	4	517	1	0	0	0	0	1	0	0	0	8885	594	21	2	260	2	LOC402644	7	28319099	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		28319099	130819564	17	29887											
ZAN	7455	broad.mit.edu	37	7	100395076	100395076	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	100395076	A	A	100395076	2	1	517	1	0	0	0	0	0	0	0	1	17525	1045	37	1		1	ZAN	7	100395076	Silent	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	72075977	100395076	58743587	18	29888											
PTPRZ1	5803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	121651006	121651006	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	121651006	T	A	121651006	3	1	517	1	0	0	0	0	1	0	0	0	12827	1783	62	5	1952	5	PTPRZ1	7	121651006	Missense_Mutation	SNP	T	TCGA-CJ-4913-01A-01D-1429-08	21255930	121651006	37487657	19	29889			1	59		2	2	18	N	T_A	3.185039e-05
PTPRZ1	5803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	121651023	121651023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	121651023	A	T	121651023	3	4	517	1	0	0	0	0	1	0	0	0	12827	98	4	5	1969	5	PTPRZ1	7	121651023	Missense_Mutation	SNP	A	TCGA-CJ-4913-01A-01D-1429-08	17	121651023	37487640	20	29890			1	59		2	2	18	N	T_A	3.185039e-05
CASP2	835	broad.mit.edu;ucsc.edu	37	7	143000899	143000899	+	Missense_Mutation	SNP	C	A	A	rs145619760	alternate_allele	TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	143000899	A	A	143000899	3	1	517	1	0	0	0	0	1	0	0	0	2673	506	18	4	1024	4	CASP2	7	143000899	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	21349876	143000899	16137764	21	29891											
AGPAT5	55326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	6612685	6612685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	G	6612685	A	G	6612685	3	3	517	1	0	0	0	0	1	0	0	0	390	101	4	3	885	3	AGPAT5	8	6612685	Missense_Mutation	SNP	A	TCGA-CJ-4913-01A-01D-1429-08		6612685	139751337	22	29892											
ZNF395	55893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	28209116	28209116	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	28209116	A	T	28209116	3	4	517	1	0	0	0	0	1	0	0	0	17893	304	11	5	428	5	ZNF395	8	28209116	Missense_Mutation	SNP	A	TCGA-CJ-4913-01A-01D-1429-08	21596431	28209116	118154906	23	29893											
RANBP6	26953	hgsc.bcm.edu;ucsc.edu	37	9	6014830	6014830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	6014830	C	T	6014830	3	4	517	1	0	0	0	0	1	0	0	0	13044	623	22	2	2543	2	RANBP6	9	6014830	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		6014830	135198601	24	29894											
SEC16A	9919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139369367	139369367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	139369367	T	A	139369367	3	1	517	1	0	0	0	0	1	0	0	0	13999	1580	55	5	4492	5	SEC16A	9	139369367	Missense_Mutation	SNP	T	TCGA-CJ-4913-01A-01D-1429-08	133354537	139369367	1844064	25	29895											
PLAU	5328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75675037	75675037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	75675037	A	T	75675037	3	4	517	1	0	0	0	0	1	0	0	0	12029	11	1	5	1071	5	PLAU	10	75675037	Missense_Mutation	SNP	A	TCGA-CJ-4913-01A-01D-1429-08		75675037	59859710	26	29896											
C10orf91	170393	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	134261287	134261287	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	134261287	C	T	134261287	2	4	517	1	0	0	0	0	0	0	0	1	1626	680	24	2		2	C10orf91	10	134261287	Silent	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	58586250	134261287	1273460	27	29897											
LSP1	4046	broad.mit.edu;ucsc.edu	37	11	1908746	1908746	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	1908746	T	T	1908746	3	4	517	1	0	0	0	0	1	0	0	0	9070	710	25	2	1011	2	LSP1	11	1908746	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		1908746	133097770	28	29898											
OR10AG1	282770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55735328	55735328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	55735328	C	A	55735328	3	1	517	1	0	0	0	0	1	0	0	0	10904	825	29	4	296	4	OR10AG1	11	55735328	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	53826582	55735328	79271188	29	29899											
AEBP2	121536	broad.mit.edu	37	12	19593226	19593226	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	19593226	A	A	19593226	3	1	517	1	0	0	0	0	1	0	0	0	350	768	27	4	595	4	AEBP2	12	19593226	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		19593226	114258669	30	29900											
SLCO1B1	10599	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21331930	21331930	+	Missense_Mutation	SNP	G	G	A	rs147421160		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	21331930	G	A	21331930	3	1	517	1	0	0	0	0	1	0	0	0	14736	1145	40	1	725	1	SLCO1B1	12	21331930	Missense_Mutation	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	1738704	21331930	112519965	31	29901											
BAZ2A	11176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57007904	57007904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	C	57007904	T	C	57007904	3	2	517	1	0	0	0	0	1	0	0	0	1331	1638	57	3	5066	3	BAZ2A	12	57007904	Missense_Mutation	SNP	T	TCGA-CJ-4913-01A-01D-1429-08	35675974	57007904	76843991	32	29902											
AVPR1A	552	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	63543859	63543859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	63543859	G	T	63543859	4	4	517	1	0	0	0	0	0	1	0	0	1231	1059	37	4	506	4	AVPR1A	12	63543859	Nonsense_Mutation	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	6535955	63543859	70308036	33	29903											
COQ5	84274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	120966769	120966769	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	120966769	A	T	120966769	3	4	517	1	0	0	0	0	1	0	0	0	3750	159	6	5	835	5	COQ5	12	120966769	Missense_Mutation	SNP	A	TCGA-CJ-4913-01A-01D-1429-08	57422910	120966769	12885126	34	29904											
FAM123A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25744223	25744223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	C	25744223	T	C	25744223	3	2	517	1	0	0	0	0	1	0	0	0	5426	1551	54	3	484	3	FAM123A	13	25744223	Missense_Mutation	SNP	T	TCGA-CJ-4913-01A-01D-1429-08		25744223	89425655	35	29905											
FOXO1	2308	broad.mit.edu	37	13	41134652	41134652	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	G	41134652	G	G	41134652	3	3	517	1	0	0	0	0	1	0	0	0	6030	594	21	4	995	4	FOXO1	13	41134652	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	15390429	41134652	74035226	36	29906											
MAX	4149	broad.mit.edu	37	14	65569055	65569055	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	65569055	A	A	65569055	3	1	517	1	0	0	0	0	1	0	0	0	9346	826	29	4	839	4	MAX	14	65569055	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		65569055	41780485	37	29907											
KIAA1409	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94088412	94088412	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	94088412	C	A	94088412	2	1	517	1	0	0	0	0	0	0	0	1	8237	668	24	4		4	KIAA1409	14	94088412	Silent	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	28519357	94088412	13261128	38	29908											
SERPINA12	145264	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94964360	94964360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	94964360	C	A	94964360	3	1	517	1	0	0	0	0	1	0	0	0	14102	912	32	4	885	4	SERPINA12	14	94964360	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	875948	94964360	12385180	39	29909											
UBR1	197131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43281101	43281101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	43281101	C	A	43281101	4	1	517	1	0	0	0	0	0	1	0	0	16913	603	21	4	1388	4	UBR1	15	43281101	Nonsense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		43281101	59250291	40	29910											
FBN1	2200	hgsc.bcm.edu;ucsc.edu	37	15	48936936	48936936	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	-	48936936	G	-	48936936	7	5	517	1	0	1	0	1	0	0	0	0	5709	991	35	0	8844	0	FBN1	15	48936936	Frame_Shift_Del	DEL	G	TCGA-CJ-4913-01A-01D-1429-08	5655835	48936936	53594456	41	29911											
MYO5C	55930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52539694	52539694	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	G	52539694	C	G	52539694	3	3	517	1	0	0	0	0	1	0	0	0	10087	796	28	4	3494	4	MYO5C	15	52539694	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	3602758	52539694	49991698	42	29912											
KLHL25	64410	broad.mit.edu;hgsc.bcm.edu	37	15	86311567	86311567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	86311567	C	A	86311567	3	1	517	1	0	0	0	0	1	0	0	0	8387	797	28	4	298	4	KLHL25	15	86311567	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	33771873	86311567	16219825	43	29913											
SPNS1	83985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28993800	28993800	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	28993800	C	T	28993800	2	4	517	1	0	0	0	0	0	0	0	1	15086	842	30	2		2	SPNS1	16	28993800	Silent	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		28993800	61360953	44	29914											
RNF40	9810	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30774777	30774777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	30774777	G	T	30774777	3	4	517	1	0	0	0	0	1	0	0	0	13506	933	33	4	349	4	RNF40	16	30774777	Missense_Mutation	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	1780977	30774777	59579976	45	29915											
PKD1L2	114780	broad.mit.edu	37	16	81183400	81183400	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	81183400	A	A	81183400	3	1	517	1	0	0	0	0	1	0	0	0	11972	536	19	4	2794	4	PKD1L2	16	81183400	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	50408623	81183400	9171353	46	29916											
CD300E	342510	broad.mit.edu;hgsc.bcm.edu	37	17	72613272	72613272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	72613272	C	T	72613272	3	4	517	1	0	0	0	0	1	0	0	0	3000	507	18	2	256	2	CD300E	17	72613272	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08		72613272	8581938	47	29917											
BAIAP2	10458	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	79027521	79027521	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	79027521	G	A	79027521	2	1	517	1	0	0	0	0	0	0	0	1	1301	933	33	2		2	BAIAP2	17	79027521	Silent	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	6414249	79027521	2167689	48	29918											
ROCK1	6093	hgsc.bcm.edu;ucsc.edu	37	18	18629104	18629105	+	Frame_Shift_Ins	INS	-	-	A	rs35810558		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	18629105	-	A	18629104	7	5	517	1	0	1	1	0	0	0	0	0	13530	933	33	0	3821	0	ROCK1	18	18629104	Frame_Shift_Ins	INS	-	TCGA-CJ-4913-01A-01D-1429-08		18629104	59448144	49	29919											
PHLPP1	23239	broad.mit.edu	37	18	60646514	60646514	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	60646514	A	A	60646514	2	1	517	1	0	0	0	0	0	0	0	1	11861	1103	39	1		1	PHLPP1	18	60646514	Silent	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	42017410	60646514	17430734	50	29920											
ABCA7	10347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1054031	1054031	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	1054031	A	T	1054031	3	4	517	1	0	0	0	0	1	0	0	0	37	159	6	5	3597	5	ABCA7	19	1054031	Missense_Mutation	SNP	A	TCGA-CJ-4913-01A-01D-1429-08		1054031	58074952	51	29921											
TMIGD2	126259	broad.mit.edu	37	19	4294619	4294619	+	Silent	SNP	A	C	C	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	C	4294619	C	C	4294619	2	2	517	1	0	0	0	0	0	0	0	1	16243	146	6	5		5	TMIGD2	19	4294619	Silent	SNP	A	TCGA-CJ-4913-01A-01D-1429-08	3240588	4294619	54834364	52	29922											
ZNF100	163227	hgsc.bcm.edu;ucsc.edu	37	19	21910711	21910712	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	21910712	-	T	21910711	7	5	517	1	0	1	1	0	0	0	0	0	17725	449	16	0	1229	0	ZNF100	19	21910711	Frame_Shift_Ins	INS	-	TCGA-CJ-4913-01A-01D-1429-08	17616092	21910711	37218272	53	29923											
POLD1	5424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50918766	50918766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	50918766	C	A	50918766	3	1	517	1	0	0	0	0	1	0	0	0	12197	855	30	4	2714	4	POLD1	19	50918766	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	29008055	50918766	8210217	54	29924											
PEG3	5178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57325907	57325907	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	G	57325907	T	G	57325907	2	3	517	1	0	0	0	0	0	0	0	1	11727	1741	61	5		5	PEG3	19	57325907	Silent	SNP	T	TCGA-CJ-4913-01A-01D-1429-08	6407141	57325907	1803076	55	29925											
FOXR2	139628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	55650703	55650703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	C	55650703	G	C	55650703	3	2	517	1	0	0	0	0	1	0	0	0	6039	943	33	4	561	4	FOXR2	23	55650703	Missense_Mutation	SNP	G	TCGA-CJ-4913-01A-01D-1429-08		55650703	99619857	56	29926											
ZDHHC9	51114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	128962964	128962964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	T	128962964	C	T	128962964	3	4	517	1	0	0	0	0	1	0	0	0	17634	594	21	2	805	2	ZDHHC9	23	128962964	Missense_Mutation	SNP	C	TCGA-CJ-4913-01A-01D-1429-08	73312261	128962964	26307596	57	29927											
TFDP3	51270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	132352095	132352095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4913-01A-01D-1429-08	TCGA-CJ-4913-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0635f266-c4be-45ea-8347-455ef7ad5648	78e819a5-4d61-478c-8e72-cc6d596f487f	A	132352095	G	A	132352095	3	1	517	1	0	0	0	0	1	0	0	0	15811	1261	44	2	1028	2	TFDP3	23	132352095	Missense_Mutation	SNP	G	TCGA-CJ-4913-01A-01D-1429-08	3389131	132352095	22918465	58	29928											
MIA3	375056	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	222794531	222794531	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	C	222794531	A	C	222794531	3	2	518	1	0	0	0	0	1	0	0	0	9572	333	12	5	170	5	MIA3	1	222794531	Missense_Mutation	SNP	A	TCGA-CJ-4916-01A-01D-1429-08		222794531	26456090	1	29929											
OR2L8	391190	broad.mit.edu;hgsc.bcm.edu	37	1	248112971	248112971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	248112971	A	T	248112971	3	4	518	1	0	0	0	0	1	0	0	0	11016	72	3	5	814	5	OR2L8	1	248112971	Missense_Mutation	SNP	A	TCGA-CJ-4916-01A-01D-1429-08	25318440	248112971	1137650	2	29930											
FBXO11	80204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	48066061	48066061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	C	48066061	T	C	48066061	3	2	518	1	0	0	0	0	1	0	0	0	5734	1435	50	3	2429	3	FBXO11	2	48066061	Missense_Mutation	SNP	T	TCGA-CJ-4916-01A-01D-1429-08		48066061	195133312	3	29931											
CCDC93	54520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	118766138	118766138	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	118766138	A	G	118766138	2	3	518	1	0	0	0	0	0	0	0	1	2874	69	3	3		3	CCDC93	2	118766138	Silent	SNP	A	TCGA-CJ-4916-01A-01D-1429-08	70700077	118766138	124433235	4	29932											
FMNL2	114793	hgsc.bcm.edu	37	2	153493057	153493059	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	-	153493059	AAT	-	153493057	7	5	518	1	0	1	0	1	0	0	0	0	5959	130	5	0	2883	0	FMNL2	2	153493057	In_Frame_Del	DEL	AAT	TCGA-CJ-4916-01A-01D-1429-08	34726919	153493057	89706316	5	29933											
ITGAV	3685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	187500900	187500900	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	187500900	G	A	187500900	2	1	518	1	0	0	0	0	0	0	0	1	7895	1161	41	2		2	ITGAV	2	187500900	Silent	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	34007843	187500900	55698473	6	29934											
XRCC5	7520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	217005911	217005911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	217005911	G	A	217005911	3	1	518	1	0	0	0	0	1	0	0	0	17468	1203	42	2	1395	2	XRCC5	2	217005911	Missense_Mutation	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	29505011	217005911	26193462	7	29935											
STK36	27148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219561786	219561786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	219561786	G	T	219561786	3	4	518	1	0	0	0	0	1	0	0	0	15314	1174	41	4	2697	4	STK36	2	219561786	Missense_Mutation	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	2555875	219561786	23637587	8	29936											
VHL	7428	hgsc.bcm.edu	37	3	10183748	10183748	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq;PacBio			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	10183748	C	T	10183748	4	4	518	1	0	0	0	0	0	1	0	0	17174	595	21	2	219	2	VHL	3	10183748	Nonsense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08		10183748	187838682	9	29937											
SCN10A	6336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38802744	38802744	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	38802744	A	G	38802744	2	3	518	1	0	0	0	0	0	0	0	1	13925	446	16	3		3	SCN10A	3	38802744	Silent	SNP	A	TCGA-CJ-4916-01A-01D-1429-08	28618996	38802744	159219686	10	29938											
GPR128	84873	broad.mit.edu;hgsc.bcm.edu	37	3	100354672	100354672	+	Splice_Site	SNP	T	T	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	100354672	T	A	100354672	5	1	518	1	0	0	0	0	0	0	1	0	6648	1652	57	5	617	5	GPR128	3	100354672	Splice_Site	SNP	T	TCGA-CJ-4916-01A-01D-1429-08	61551928	100354672	97667758	11	29939											
AHSG	197	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186335070	186335070	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	186335070	G	T	186335070	2	4	518	1	0	0	0	0	0	0	0	1	420	1335	47	4		4	AHSG	3	186335070	Silent	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	85980398	186335070	11687360	12	29940											
PHF17	79960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	129789065	129789065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	129789065	T	A	129789065	3	1	518	1	0	0	0	0	1	0	0	0	11835	1696	59	5	1619	5	PHF17	4	129789065	Missense_Mutation	SNP	T	TCGA-CJ-4916-01A-01D-1429-08		129789065	61365211	13	29941											
ACTBL2	345651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	56777710	56777710	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	56777710	G	A	56777710	2	1	518	1	0	0	0	0	0	0	0	1	194	1164	41	2		2	ACTBL2	5	56777710	Silent	SNP	G	TCGA-CJ-4916-01A-01D-1429-08		56777710	124137550	14	29942											
CCND3	896	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	41904303	41904303	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	41904303	A	G	41904303	2	3	518	1	0	0	0	0	0	0	0	1	2920	175	7	3		3	CCND3	6	41904303	Silent	SNP	A	TCGA-CJ-4916-01A-01D-1429-08		41904303	129210764	15	29943											
MET	4233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	116339927	116339927	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	116339927	G	T	116339927	2	4	518	1	0	0	0	0	0	0	0	1	9492	1103	39	4		4	MET	7	116339927	Silent	SNP	G	TCGA-CJ-4916-01A-01D-1429-08		116339927	42798736	16	29944											
FAM91A1	157769	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	124817571	124817571	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	124817571	T	A	124817571	3	1	518	1	0	0	0	0	1	0	0	0	5658	1522	53	5	1948	5	FAM91A1	8	124817571	Missense_Mutation	SNP	T	TCGA-CJ-4916-01A-01D-1429-08		124817571	21546451	17	29945											
VLDLR	7436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	2646492	2646492	+	Missense_Mutation	SNP	A	A	C	rs148487944	alternate_allele	TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	C	2646492	A	C	2646492	3	2	518	1	0	0	0	0	1	0	0	0	17186	72	3	5	1685	5	VLDLR	9	2646492	Missense_Mutation	SNP	A	TCGA-CJ-4916-01A-01D-1429-08		2646492	138566939	18	29946											
SMC5	23137	broad.mit.edu;hgsc.bcm.edu	37	9	72933592	72933592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	72933592	G	A	72933592	3	1	518	1	0	0	0	0	1	0	0	0	14799	943	33	2	2023	2	SMC5	9	72933592	Missense_Mutation	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	70287100	72933592	68279839	19	29947											
ZWINT	11130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	58120095	58120095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	58120095	C	G	58120095	3	3	518	1	0	0	0	0	1	0	0	0	18261	864	30	4	770	4	ZWINT	10	58120095	Missense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08		58120095	77414652	20	29948											
BTAF1	9044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	93784657	93784657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	93784657	C	T	93784657	3	4	518	1	0	0	0	0	1	0	0	0	1538	739	26	2	5146	2	BTAF1	10	93784657	Missense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08	35664562	93784657	41750090	21	29949											
SLIT1	6585	broad.mit.edu;hgsc.bcm.edu	37	10	98945307	98945307	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	98945307	C	G	98945307	3	3	518	1	0	0	0	0	1	0	0	0	14752	855	30	4	4627	4	SLIT1	10	98945307	Missense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08	5160650	98945307	36589440	22	29950											
DCHS1	8642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6661620	6661620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	6661620	C	T	6661620	3	4	518	1	0	0	0	0	1	0	0	0	4289	922	32	2	8751	2	DCHS1	11	6661620	Missense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08		6661620	128344896	23	29951											
TNKS1BP1	85456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57087711	57087711	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	57087711	G	A	57087711	2	1	518	1	0	0	0	0	0	0	0	1	16332	1252	44	2		2	TNKS1BP1	11	57087711	Silent	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	50426091	57087711	77918805	24	29952											
FBXL14	144699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	1702196	1702196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	C	1702196	T	C	1702196	3	2	518	1	0	0	0	0	1	0	0	0	5717	1609	56	3	227	3	FBXL14	12	1702196	Missense_Mutation	SNP	T	TCGA-CJ-4916-01A-01D-1429-08		1702196	132149699	25	29953											
OR10AD1	121275	hgsc.bcm.edu	37	12	48596875	48596876	+	Frame_Shift_Ins	INS	-	-	A	rs144247841	bycluster;by1000genomes	TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	48596876	-	A	48596875	7	5	518	1	0	1	1	0	0	0	0	0	10903	465	17	0	756	0	OR10AD1	12	48596875	Frame_Shift_Ins	INS	-	TCGA-CJ-4916-01A-01D-1429-08	46894679	48596875	85255020	26	29954											
ACACB	32	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	109702175	109702175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	109702175	A	G	109702175	3	3	518	1	0	0	0	0	1	0	0	0	107	304	11	3	7120	3	ACACB	12	109702175	Missense_Mutation	SNP	A	TCGA-CJ-4916-01A-01D-1429-08	61105300	109702175	24149720	27	29955											
PITPNM2	57605	broad.mit.edu;hgsc.bcm.edu	37	12	123471023	123471023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	123471023	A	G	123471023	3	3	518	1	0	0	0	0	1	0	0	0	11958	333	12	3	371	3	PITPNM2	12	123471023	Missense_Mutation	SNP	A	TCGA-CJ-4916-01A-01D-1429-08	13768848	123471023	10380872	28	29956											
DNAH10	196385	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124270368	124270368	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	124270368	T	A	124270368	3	1	518	1	0	0	0	0	1	0	0	0	4600	1696	59	5	1157	5	DNAH10	12	124270368	Missense_Mutation	SNP	T	TCGA-CJ-4916-01A-01D-1429-08	799345	124270368	9581527	29	29957											
FAM179B	23116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	45433179	45433179	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	45433179	C	G	45433179	3	3	518	1	0	0	0	0	1	0	0	0	5510	913	32	4	1557	4	FAM179B	14	45433179	Missense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08		45433179	61916361	30	29958											
PELI2	57161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	56757051	56757051	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	56757051	G	T	56757051	2	4	518	1	0	0	0	0	0	0	0	1	11729	1335	47	4		4	PELI2	14	56757051	Silent	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	11323872	56757051	50592489	31	29959	363	2									
PELI2	57161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	56757052	56757052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	56757052	G	T	56757052	3	4	518	1	0	0	0	0	1	0	0	0	11729	1261	44	4	592	4	PELI2	14	56757052	Missense_Mutation	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	1	56757052	50592488	32	29960	363	2									
POMT2	29954	hgsc.bcm.edu;ucsc.edu	37	14	77767444	77767445	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	77767445	-	G	77767444	7	5	518	1	0	1	1	0	0	0	0	0	12253	1580	55	0	1511	0	POMT2	14	77767444	Frame_Shift_Ins	INS	-	TCGA-CJ-4916-01A-01D-1429-08	21010392	77767444	29582096	33	29961											
SPATA5L1	79029	broad.mit.edu	37	15	45695510	45695510	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	45695510	T	T	45695510	3	4	518	1	0	0	0	0	1	0	0	0	15024	652	23	1	885	1	SPATA5L1	15	45695510	Missense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08		45695510	56835882	34	29962											
ZNF423	23090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	49670844	49670844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	49670844	G	A	49670844	3	1	518	1	0	0	0	0	1	0	0	0	17910	1087	38	1	1655	1	ZNF423	16	49670844	Missense_Mutation	SNP	G	TCGA-CJ-4916-01A-01D-1429-08		49670844	40683909	35	29963											
TAF1C	9013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	84216939	84216939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	C	84216939	T	C	84216939	3	2	518	1	0	0	0	0	1	0	0	0	15533	1449	50	3	2330	3	TAF1C	16	84216939	Missense_Mutation	SNP	T	TCGA-CJ-4916-01A-01D-1429-08	34546095	84216939	6137814	36	29964											
CCL3	6348	hgsc.bcm.edu;ucsc.edu	37	17	34417377	34417377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	34417377	C	A	34417377	3	1	518	1	0	0	0	0	1	0	0	0	2903	478	17	4	262	4	CCL3	17	34417377	Missense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08		34417377	46777833	37	29965											
C17orf47	284083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56620818	56620818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	56620818	G	T	56620818	3	4	518	1	0	0	0	0	1	0	0	0	1860	1232	43	4	990	4	C17orf47	17	56620818	Missense_Mutation	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	22203441	56620818	24574392	38	29966											
TTYH2	94015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72233486	72233486	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	72233486	G	T	72233486	2	4	518	1	0	0	0	0	0	0	0	1	16752	1190	42	4		4	TTYH2	17	72233486	Silent	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	15612668	72233486	8961724	39	29967											
DTNA	1837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	32459638	32459638	+	Missense_Mutation	SNP	G	G	T	rs150410546	alternate_allele	TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	32459638	G	T	32459638	3	4	518	1	0	0	0	0	1	0	0	0	4790	1232	43	4	2200	4	DTNA	18	32459638	Missense_Mutation	SNP	G	TCGA-CJ-4916-01A-01D-1429-08		32459638	45617610	40	29968											
SERPINB10	5273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	61600419	61600419	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	T	61600419	C	T	61600419	2	4	518	1	0	0	0	0	0	0	0	1	14110	477	17	2		2	SERPINB10	18	61600419	Silent	SNP	C	TCGA-CJ-4916-01A-01D-1429-08	29140781	61600419	16476829	41	29969											
GAPDHS	26330	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36029250	36029250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	36029250	A	G	36029250	3	3	518	1	0	0	0	0	1	0	0	0	6244	304	11	3	297	3	GAPDHS	19	36029250	Missense_Mutation	SNP	A	TCGA-CJ-4916-01A-01D-1429-08		36029250	23099733	42	29970											
AXL	558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41727096	41727096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	C	41727096	G	C	41727096	3	2	518	1	0	0	0	0	1	0	0	0	1238	1339	47	4	364	4	AXL	19	41727096	Missense_Mutation	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	5697846	41727096	17401887	43	29971											
PPP1R13L	10848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45901534	45901534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	C	45901534	T	C	45901534	3	2	518	1	0	0	0	0	1	0	0	0	12368	1464	51	3	2491	3	PPP1R13L	19	45901534	Missense_Mutation	SNP	T	TCGA-CJ-4916-01A-01D-1429-08	4174438	45901534	13227449	44	29972											
NTF4	4909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49564851	49564851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	C	49564851	T	C	49564851	3	2	518	1	0	0	0	0	1	0	0	0	10704	1638	57	3	232	3	NTF4	19	49564851	Missense_Mutation	SNP	T	TCGA-CJ-4916-01A-01D-1429-08	3663317	49564851	9564132	45	29973											
KAL1	3730	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	8504907	8504907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	8504907	C	A	8504907	3	1	518	1	0	0	0	0	1	0	0	0	7981	565	20	4	532	4	KAL1	23	8504907	Missense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08		8504907	146765653	46	29974											
CENPI	2491	broad.mit.edu;hgsc.bcm.edu	37	X	100381784	100381784	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	100381784	G	A	100381784	2	1	518	1	0	0	0	0	0	0	0	1	3235	933	33	2		2	CENPI	23	100381784	Silent	SNP	G	TCGA-CJ-4916-01A-01D-1429-08	91876877	100381784	54888776	47	29975											
TCEAL2	140597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101382231	101382231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	A	101382231	C	A	101382231	3	1	518	1	0	0	0	0	1	0	0	0	15683	477	17	4	431	4	TCEAL2	23	101382231	Missense_Mutation	SNP	C	TCGA-CJ-4916-01A-01D-1429-08	1000447	101382231	53888329	48	29976											
STAG2	10735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	123179154	123179154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4916-01A-01D-1429-08	TCGA-CJ-4916-11A-01D-1429-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	81b0e02c-069c-4c4b-b56f-79c2ebec9927	c417619d-5a8f-4c6d-9df7-056f08fef794	G	123179154	T	G	123179154	3	3	518	1	0	0	0	0	1	0	0	0	15255	1829	64	5	625	5	STAG2	23	123179154	Missense_Mutation	SNP	T	TCGA-CJ-4916-01A-01D-1429-08	21796923	123179154	32091406	49	29977											
TNFRSF9	3604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	7998781	7998781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	7998781	C	A	7998781	3	1	519	1	0	0	0	0	1	0	0	0	16312	695	24	4	583	4	TNFRSF9	1	7998781	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08		7998781	241251840	1	29978											
ARHGEF10L	55160	broad.mit.edu;hgsc.bcm.edu	37	1	17990994	17990994	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	17990994	C	A	17990994	2	1	519	1	0	0	0	0	0	0	0	1	895	639	23	4		4	ARHGEF10L	1	17990994	Silent	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	9992213	17990994	231259627	2	29979											
PTPRU	10076	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	29638000	29638000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	29638000	C	G	29638000	3	3	519	1	0	0	0	0	1	0	0	0	12826	768	27	4	3024	4	PTPRU	1	29638000	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	11647006	29638000	219612621	3	29980											
LRRIQ3	127255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	74507303	74507303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	74507303	C	T	74507303	3	4	519	1	0	0	0	0	1	0	0	0	9037	922	32	2	570	2	LRRIQ3	1	74507303	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	44869303	74507303	174743318	4	29981											
BCAR3	8412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94057948	94057948	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	94057948	G	A	94057948	2	1	519	1	0	0	0	0	0	0	0	1	1349	933	33	2		2	BCAR3	1	94057948	Silent	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	19550645	94057948	155192673	5	29982											
NUP210L	91181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154029322	154029322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	154029322	C	T	154029322	3	4	519	1	0	0	0	0	1	0	0	0	10768	913	32	2	2529	2	NUP210L	1	154029322	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	59971374	154029322	95221299	6	29983											
RABGAP1L	9910	hgsc.bcm.edu;ucsc.edu	37	1	174781011	174781011	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	-	174781011	T	-	174781011	7	5	519	1	0	1	0	1	0	0	0	0	12978	1596	56	0	2323	0	RABGAP1L	1	174781011	Frame_Shift_Del	DEL	T	TCGA-CJ-4918-01A-01D-1429-08	20751689	174781011	74469610	7	29984											
TPR	7175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186327744	186327744	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	186327744	G	A	186327744	2	1	519	1	0	0	0	0	0	0	0	1	16428	1368	48	2		2	TPR	1	186327744	Silent	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	11546733	186327744	62922877	8	29985											
NUAK2	81788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205272654	205272654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	205272654	C	T	205272654	3	4	519	1	0	0	0	0	1	0	0	0	10720	710	25	2	79	2	NUAK2	1	205272654	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	18944910	205272654	43977967	9	29986											
TRAF5	7188	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	211545865	211545865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	211545865	T	A	211545865	3	1	519	1	0	0	0	0	1	0	0	0	16456	1609	56	5	1533	5	TRAF5	1	211545865	Missense_Mutation	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	6273211	211545865	37704756	10	29987											
FMN2	56776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	240370231	240370231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	240370231	G	T	240370231	3	4	519	1	0	0	0	0	1	0	0	0	5957	1348	47	4	2137	4	FMN2	1	240370231	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	28824366	240370231	8880390	11	29988											
ITSN2	50618	hgsc.bcm.edu;ucsc.edu	37	2	24435589	24435589	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	-	24435589	C	-	24435589	7	5	519	1	0	1	0	1	0	0	0	0	7934	855	30	0	1106	0	ITSN2	2	24435589	Frame_Shift_Del	DEL	C	TCGA-CJ-4918-01A-01D-1429-08		24435589	218763784	12	29989											
EML4	27436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	42472705	42472705	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	42472705	C	A	42472705	4	1	519	1	0	0	0	0	0	1	0	0	5101	838	29	4	92	4	EML4	2	42472705	Nonsense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	18037116	42472705	200726668	13	29990											
C2orf86	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	63631341	63631341	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	63631341	A	T	63631341	3	4	519	1	0	0	0	0	1	0	0	0	2203	188	7	5	999	5	C2orf86	2	63631341	Missense_Mutation	SNP	A	TCGA-CJ-4918-01A-01D-1429-08	21158636	63631341	179568032	14	29991											
CYP26B1	56603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	72371136	72371136	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	72371136	G	T	72371136	2	4	519	1	0	0	0	0	0	0	0	1	4158	1164	41	4		4	CYP26B1	2	72371136	Silent	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	8739795	72371136	170828237	15	29992											
ALMS1	7840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	73746997	73746997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	73746997	C	A	73746997	3	1	519	1	0	0	0	0	1	0	0	0	535	507	18	4	9674	4	ALMS1	2	73746997	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	1375861	73746997	169452376	16	29993											
MRPL30	51263	broad.mit.edu;hgsc.bcm.edu	37	2	99812127	99812127	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	99812127	T	G	99812127	3	3	519	1	0	0	0	0	1	0	0	0	9801	1696	59	5	463	5	MRPL30	2	99812127	Missense_Mutation	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	26065130	99812127	143387246	17	29994											
AFF3	3899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	100625302	100625302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	100625302	C	G	100625302	3	3	519	1	0	0	0	0	1	0	0	0	358	565	20	4	3618	4	AFF3	2	100625302	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	813175	100625302	142574071	18	29995											
SGOL2	151246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	201437495	201437495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	201437495	G	T	201437495	3	4	519	1	0	0	0	0	1	0	0	0	14230	942	33	4	2448	4	SGOL2	2	201437495	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	100812193	201437495	41761878	19	29996											
ECEL1	9427	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	233349705	233349705	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	233349705	G	C	233349705	3	2	519	1	0	0	0	0	1	0	0	0	4893	1328	46	4	1435	4	ECEL1	2	233349705	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	31912210	233349705	9849668	20	29997											
VHL	7428	hgsc.bcm.edu	37	3	10183863	10183863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	10183863	G	A	10183863	3	1	519	1	0	0	0	0	1	0	0	0	17174	971	34	2	334	2	VHL	3	10183863	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08		10183863	187838567	21	29998											
KALRN	8997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	124215189	124215189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	124215189	G	A	124215189	3	1	519	1	0	0	0	0	1	0	0	0	7982	1174	41	2	4988	2	KALRN	3	124215189	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	114031326	124215189	73807241	22	29999											
WDR1	9948	broad.mit.edu;ucsc.edu	37	4	10089380	10089380	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	-	10089380	-	-	10089380	7	5	519	1	0	1	0	1	0	0	0	0	17284	333	12	0	950	0	WDR1	4	10089380	Frame_Shift_Del	DEL	A	TCGA-CJ-4918-01A-01D-1429-08		10089380	181064896	23	30000											
SLC30A9	10463	broad.mit.edu;hgsc.bcm.edu	37	4	42072678	42072678	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	42072678	C	G	42072678	3	3	519	1	0	0	0	0	1	0	0	0	14575	565	20	4	1446	4	SLC30A9	4	42072678	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	31983298	42072678	149081598	24	30001											
ANXA3	306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	79518556	79518556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	79518556	C	A	79518556	3	1	519	1	0	0	0	0	1	0	0	0	719	564	20	4	752	4	ANXA3	4	79518556	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	37445878	79518556	111635720	25	30002											
WDFY3	23001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	85654653	85654653	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	85654653	T	A	85654653	3	1	519	1	0	0	0	0	1	0	0	0	17282	1609	56	5	3577	5	WDFY3	4	85654653	Missense_Mutation	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	6136097	85654653	105499623	26	30003											
MTTP	4547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	100521758	100521758	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	100521758	C	T	100521758	2	4	519	1	0	0	0	0	0	0	0	1	9971	668	24	2		2	MTTP	4	100521758	Silent	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	14867105	100521758	90632518	27	30004											
RAPGEF2	9693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	160273880	160273880	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	160273880	T	A	160273880	3	1	519	1	0	0	0	0	1	0	0	0	13057	1490	52	5	3508	5	RAPGEF2	4	160273880	Missense_Mutation	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	59752122	160273880	30880396	28	30005											
RNASEN	0	broad.mit.edu	37	5	31423045	31423045	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	31423045	A	A	31423045	4	1	519	1	0	0	0	0	0	1	0	0	13430	922	32	4	888	4	RNASEN	5	31423045	Nonsense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08		31423045	149492215	29	30006											
KCNN2	3781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	113698884	113698884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	113698884	G	T	113698884	3	4	519	1	0	0	0	0	1	0	0	0	8086	1087	38	4	414	4	KCNN2	5	113698884	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	82275839	113698884	67216376	30	30007											
SLC12A2	6558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127497486	127497486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	127497486	G	C	127497486	3	2	519	1	0	0	0	0	1	0	0	0	14396	1281	45	4	2676	4	SLC12A2	5	127497486	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	13798602	127497486	53417774	31	30008											
GRIA1	2890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	152873521	152873521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	152873521	A	G	152873521	3	3	519	1	0	0	0	0	1	0	0	0	6774	217	8	3	122	3	GRIA1	5	152873521	Missense_Mutation	SNP	A	TCGA-CJ-4918-01A-01D-1429-08	25376035	152873521	28041739	32	30009											
C6orf145	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	3723939	3723939	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	3723939	G	A	3723939	2	1	519	1	0	0	0	0	0	0	0	1	2336	962	34	2		2	C6orf145	6	3723939	Silent	SNP	G	TCGA-CJ-4918-01A-01D-1429-08		3723939	167391128	33	30010											
SLC17A4	10050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	25779371	25779371	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	25779371	A	T	25779371	2	4	519	1	0	0	0	0	0	0	0	1	14432	175	7	5		5	SLC17A4	6	25779371	Silent	SNP	A	TCGA-CJ-4918-01A-01D-1429-08	22055432	25779371	145335696	34	30011											
CCHCR1	54535	hgsc.bcm.edu	37	6	31113524	31113525	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	31113525	-	G	31113524	7	5	519	1	0	1	1	0	0	0	0	0	2879	1580	55	0	1005	0	CCHCR1	6	31113524	Frame_Shift_Ins	INS	-	TCGA-CJ-4918-01A-01D-1429-08	5334153	31113524	140001543	35	30012											
BAT3	0	broad.mit.edu	37	6	31611899	31611899	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	31611899	A	A	31611899	3	1	519	1	0	0	0	0	1	0	0	0	1322	652	23	4	1916	4	BAT3	6	31611899	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	498375	31611899	139503168	36	30013											
UHRF1BP1	54887	hgsc.bcm.edu;ucsc.edu	37	6	34825920	34825921	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	-	34825921	AG	-	34825920	7	5	519	1	0	1	0	1	0	0	0	0	16980	72	3	0	1841	0	UHRF1BP1	6	34825920	Frame_Shift_Del	DEL	AG	TCGA-CJ-4918-01A-01D-1429-08	3214021	34825920	136289147	37	30014											
DNAH8	1769	broad.mit.edu	37	6	38889260	38889260	+	Missense_Mutation	SNP	A	T	T	rs147713611	alternate_allele	TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	38889260	T	T	38889260	3	4	519	1	0	0	0	0	1	0	0	0	4609	333	12	5	10255	5	DNAH8	6	38889260	Missense_Mutation	SNP	A	TCGA-CJ-4918-01A-01D-1429-08	4063340	38889260	132225807	38	30015											
STK31	56164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23775341	23775341	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	23775341	A	T	23775341	3	4	519	1	0	0	0	0	1	0	0	0	15308	246	9	5	694	5	STK31	7	23775341	Missense_Mutation	SNP	A	TCGA-CJ-4918-01A-01D-1429-08		23775341	135363322	39	30016											
OGDH	4967	broad.mit.edu;ucsc.edu	37	7	44733560	44733560	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	44733560	A	A	44733560	3	1	519	1	0	0	0	0	1	0	0	0	10846	739	26	4	1683	4	OGDH	7	44733560	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	20958219	44733560	114405103	40	30017											
HUS1	3364	hgsc.bcm.edu;ucsc.edu	37	7	48008881	48008881	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	-	48008881	A	-	48008881	7	5	519	1	0	1	0	1	0	0	0	0	7466	131	5	0	279	0	HUS1	7	48008881	Frame_Shift_Del	DEL	A	TCGA-CJ-4918-01A-01D-1429-08	3275321	48008881	111129782	41	30018											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu	37	7	82474757	82474757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	82474757	C	T	82474757	3	4	519	1	0	0	0	0	1	0	0	0	11590	797	28	2	1621	2	PCLO	7	82474757	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	34465876	82474757	76663906	42	30019											
EPHB4	2050	broad.mit.edu;hgsc.bcm.edu	37	7	100417900	100417900	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	100417900	A	C	100417900	3	2	519	1	0	0	0	0	1	0	0	0	5179	246	9	5	2188	5	EPHB4	7	100417900	Missense_Mutation	SNP	A	TCGA-CJ-4918-01A-01D-1429-08	17943143	100417900	58720763	43	30020											
ZNF800	168850	ucsc.edu	37	7	127031545	127031545	+	Intron	SNP	G	G	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	127031545	G	T	127031545	1	4	519	0	1	0	0	0	0	0	0	0	18181	1276	44	4		4	ZNF800	7	127031545	Intron	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	26613645	127031545	32107118	44	30021	364	2									
ZNF800	168850	ucsc.edu	37	7	127031546	127031546	+	Intron	SNP	T	T	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	127031546	T	A	127031546	1	1	519	0	1	0	0	0	0	0	0	0	18181	1682	58	5		5	ZNF800	7	127031546	Intron	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	1	127031546	32107117	45	30022	364	2									
PLEC	5339	broad.mit.edu;hgsc.bcm.edu	37	8	144996079	144996079	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	144996079	G	C	144996079	3	2	519	1	0	0	0	0	1	0	0	0	12059	1087	38	4	5737	4	PLEC	8	144996079	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08		144996079	1367943	46	30023											
JAK2	3717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	5022145	5022145	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	5022145	A	C	5022145	3	2	519	1	0	0	0	0	1	0	0	0	7945	333	12	5	160	5	JAK2	9	5022145	Missense_Mutation	SNP	A	TCGA-CJ-4918-01A-01D-1429-08		5022145	136191286	47	30024											
SLC24A2	25769	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	19550217	19550217	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	19550217	T	A	19550217	3	1	519	1	0	0	0	0	1	0	0	0	14479	1783	62	5	604	5	SLC24A2	9	19550217	Missense_Mutation	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	14528072	19550217	121663214	48	30025											
C9orf3	84909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	97823038	97823038	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	97823038	C	T	97823038	2	4	519	1	0	0	0	0	0	0	0	1	2479	610	22	2		2	C9orf3	9	97823038	Silent	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	78272821	97823038	43390393	49	30026											
COL15A1	1306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	101829277	101829277	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	101829277	T	G	101829277	2	3	519	1	0	0	0	0	0	0	0	1	3674	1596	56	5		5	COL15A1	9	101829277	Silent	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	4006239	101829277	39384154	50	30027											
CDK5RAP2	55755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123222946	123222946	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	123222946	C	T	123222946	5	4	519	1	0	0	0	0	0	0	1	0	3148	811	28	2	3655	2	CDK5RAP2	9	123222946	Splice_Site	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	21393669	123222946	17990485	51	30028											
EHMT1	79813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	140695437	140695437	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	140695437	G	A	140695437	5	1	519	1	0	0	0	0	0	0	1	0	4985	1159	40	1	2832	1	EHMT1	9	140695437	Splice_Site	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	17472491	140695437	517994	52	30029											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61868693	61868693	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	61868693	C	G	61868693	3	3	519	1	0	0	0	0	1	0	0	0	622	536	19	4	10446	4	ANK3	10	61868693	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08		61868693	73666054	53	30030											
WAPAL	23063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	88230845	88230845	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	88230845	A	T	88230845	2	4	519	1	0	0	0	0	0	0	0	1	17260	407	15	5		5	WAPAL	10	88230845	Silent	SNP	A	TCGA-CJ-4918-01A-01D-1429-08	26362152	88230845	47303902	54	30031											
C11orf9	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61545943	61545943	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	61545943	C	T	61545943	2	4	519	1	0	0	0	0	0	0	0	1	1673	564	20	2		2	C11orf9	11	61545943	Silent	SNP	C	TCGA-CJ-4918-01A-01D-1429-08		61545943	73460573	55	30032											
GRM5	2915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	88300984	88300984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	88300984	C	A	88300984	3	1	519	1	0	0	0	0	1	0	0	0	6807	710	25	4	1783	4	GRM5	11	88300984	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	26755041	88300984	46705532	56	30033											
BCO2	83875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	112064374	112064374	+	Silent	SNP	T	T	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	112064374	T	C	112064374	2	2	519	1	0	0	0	0	0	0	0	1	1385	1828	64	3		3	BCO2	11	112064374	Silent	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	23763390	112064374	22942142	57	30034											
RDH5	5959	broad.mit.edu;ucsc.edu	37	12	56115023	56115023	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	56115023	G	G	56115023	3	3	519	1	0	0	0	0	1	0	0	0	13208	179	7	3	57	3	RDH5	12	56115023	Missense_Mutation	SNP	A	TCGA-CJ-4918-01A-01D-1429-08		56115023	77736872	58	30035											
B4GALNT1	2583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	58020623	58020623	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	58020623	G	A	58020623	2	1	519	1	0	0	0	0	0	0	0	1	1266	1219	43	2		2	B4GALNT1	12	58020623	Silent	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	1905600	58020623	75831272	59	30036											
SLC24A6	80024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113742186	113742186	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	113742186	G	A	113742186	2	1	519	1	0	0	0	0	0	0	0	1	14483	1164	41	2		2	SLC24A6	12	113742186	Silent	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	55721563	113742186	20109709	60	30037	365	2									
SLC24A6	80024	hgsc.bcm.edu;ucsc.edu	37	12	113742187	113742187	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	113742187	A	T	113742187	3	4	519	1	0	0	0	0	1	0	0	0	14483	333	12	5	266	5	SLC24A6	12	113742187	Missense_Mutation	SNP	A	TCGA-CJ-4918-01A-01D-1429-08	1	113742187	20109708	61	30038	365	2									
SLC24A6	80024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113758188	113758188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	113758188	G	T	113758188	3	4	519	1	0	0	0	0	1	0	0	0	14483	1165	41	4	1152	4	SLC24A6	12	113758188	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	16001	113758188	20093707	62	30039											
POLE	5426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133233985	133233985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	133233985	G	T	133233985	3	4	519	1	0	0	0	0	1	0	0	0	12203	962	34	4	3539	4	POLE	12	133233985	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	19475797	133233985	617910	63	30040											
GJB6	10804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	20797015	20797015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	20797015	C	A	20797015	3	1	519	1	0	0	0	0	1	0	0	0	6419	710	25	4	184	4	GJB6	13	20797015	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08		20797015	94372863	64	30041											
C13orf31	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	44462991	44462991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	44462991	C	A	44462991	3	1	519	1	0	0	0	0	1	0	0	0	1728	507	18	4	1020	4	C13orf31	13	44462991	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	23665976	44462991	70706887	65	30042											
ZC3H13	23091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	46577388	46577388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	46577388	C	T	46577388	3	4	519	1	0	0	0	0	1	0	0	0	17577	623	22	2	3904	2	ZC3H13	13	46577388	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	2114397	46577388	68592490	66	30043											
CTAGE5	4253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	39782629	39782629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	39782629	G	A	39782629	3	1	519	1	0	0	0	0	1	0	0	0	3996	943	33	2	1364	2	CTAGE5	14	39782629	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08		39782629	67566911	67	30044											
HIF1A	3091	broad.mit.edu;hgsc.bcm.edu	37	14	62211422	62211422	+	Splice_Site	SNP	G	G	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	62211422	G	C	62211422	5	2	519	1	0	0	0	0	0	0	1	0	7110	956	33	4	2143	4	HIF1A	14	62211422	Splice_Site	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	22428793	62211422	45138118	68	30045											
COPS2	9318	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49429387	49429387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	49429387	T	C	49429387	3	2	519	1	0	0	0	0	1	0	0	0	3735	1609	56	3	863	3	COPS2	15	49429387	Missense_Mutation	SNP	T	TCGA-CJ-4918-01A-01D-1429-08		49429387	53102005	69	30046											
CSK	1445	broad.mit.edu;hgsc.bcm.edu	37	15	75091783	75091783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	75091783	T	A	75091783	3	1	519	1	0	0	0	0	1	0	0	0	3945	1551	54	5	427	5	CSK	15	75091783	Missense_Mutation	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	25662396	75091783	27439609	70	30047											
RBL2	5934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	53495738	53495738	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	53495738	G	T	53495738	4	4	519	1	0	0	0	0	0	1	0	0	13123	1059	37	4	1470	4	RBL2	16	53495738	Nonsense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08		53495738	36859015	71	30048											
SLC38A8	146167	broad.mit.edu	37	16	84063144	84063144	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	84063144	A	A	84063144	3	1	519	1	0	0	0	0	1	0	0	0	14623	856	30	4	686	4	SLC38A8	16	84063144	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	30567406	84063144	6291609	72	30049											
AIPL1	23746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	6331788	6331788	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	6331788	C	T	6331788	2	4	519	1	0	0	0	0	0	0	0	1	436	738	26	2		2	AIPL1	17	6331788	Silent	SNP	C	TCGA-CJ-4918-01A-01D-1429-08		6331788	74863422	73	30050											
NBR1	4077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41349125	41349125	+	Splice_Site	SNP	T	T	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	41349125	T	C	41349125	5	2	519	1	0	0	0	0	0	0	1	0	10207	1710	59	3	2086	3	NBR1	17	41349125	Splice_Site	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	35017337	41349125	39846085	74	30051											
CLTC	1213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57758814	57758814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	57758814	T	C	57758814	3	2	519	1	0	0	0	0	1	0	0	0	3568	1841	64	3	3302	3	CLTC	17	57758814	Missense_Mutation	SNP	T	TCGA-CJ-4918-01A-01D-1429-08	16409689	57758814	23436396	75	30052											
ATP8B1	5205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	55361849	55361849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	55361849	T	C	55361849	3	2	519	1	0	0	0	0	1	0	0	0	1194	1763	61	3	2833	3	ATP8B1	18	55361849	Missense_Mutation	SNP	T	TCGA-CJ-4918-01A-01D-1429-08		55361849	22715399	76	30053											
ZBTB7A	51341	broad.mit.edu;hgsc.bcm.edu	37	19	4048233	4048233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	4048233	C	A	4048233	3	1	519	1	0	0	0	0	1	0	0	0	17565	796	28	4	486	4	ZBTB7A	19	4048233	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08		4048233	55080750	77	30054											
PDE4C	5143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18331077	18331077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	18331077	G	A	18331077	3	1	519	1	0	0	0	0	1	0	0	0	11648	1174	41	2	1413	2	PDE4C	19	18331077	Missense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08	14282844	18331077	40797906	78	30055											
SIPA1L3	23094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38572298	38572298	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	38572298	A	G	38572298	2	3	519	1	0	0	0	0	0	0	0	1	14344	175	7	3		3	SIPA1L3	19	38572298	Silent	SNP	A	TCGA-CJ-4918-01A-01D-1429-08	20241221	38572298	20556685	79	30056											
ZNF211	10520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58153167	58153167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	G	58153167	C	G	58153167	3	3	519	1	0	0	0	0	1	0	0	0	17779	855	30	4	1366	4	ZNF211	19	58153167	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08	19580869	58153167	975816	80	30057											
ZSCAN1	284312	hgsc.bcm.edu	37	19	58551902	58551902	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	C	58551902	A	C	58551902	3	2	519	1	0	0	0	0	1	0	0	0	18238	246	9	5	461	5	ZSCAN1	19	58551902	Missense_Mutation	SNP	A	TCGA-CJ-4918-01A-01D-1429-08	398735	58551902	577081	81	30058											
JAG1	182	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	10627597	10627597	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	T	10627597	G	T	10627597	4	4	519	1	0	0	0	0	0	1	0	0	7941	1024	36	4	1833	4	JAG1	20	10627597	Nonsense_Mutation	SNP	G	TCGA-CJ-4918-01A-01D-1429-08		10627597	52397923	82	30059											
TMPRSS15	5651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	19701513	19701513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4918-01A-01D-1429-08	TCGA-CJ-4918-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c5d4600-0271-4c03-ab44-239ac19d8b4d	80f9282a-cc37-4eb9-9b12-afac245fc8bd	A	19701513	C	A	19701513	3	1	519	1	0	0	0	0	1	0	0	0	16258	594	21	4	1350	4	TMPRSS15	21	19701513	Missense_Mutation	SNP	C	TCGA-CJ-4918-01A-01D-1429-08		19701513	28428382	83	30060											
DEM1	0	hgsc.bcm.edu;ucsc.edu	37	1	40980774	40980783	+	Frame_Shift_Del	DEL	TACAGCCAAG	TACAGCCAAG	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	TACAGCCAAG	TACAGCCAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	40980783	TACAGCCAAG	-	40980774	7	5	520	1	0	1	0	1	0	0	0	0	4427	1413	49	0	560	0	DEM1	1	40980774	Frame_Shift_Del	DEL	TACAGCCAAG	TCGA-CJ-4920-01A-01D-1429-08		40980774	208269847	1	30061											
DOCK7	85440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62973695	62973695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	62973695	C	A	62973695	3	1	520	1	0	0	0	0	1	0	0	0	4694	826	29	4	2072	4	DOCK7	1	62973695	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	21992921	62973695	186276926	2	30062											
ST6GALNAC3	256435	hgsc.bcm.edu;ucsc.edu	37	1	77094481	77094482	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	77094482	-	A	77094481	7	5	520	1	0	1	1	0	0	0	0	0	15237	478	17	0	940	0	ST6GALNAC3	1	77094481	Frame_Shift_Ins	INS	-	TCGA-CJ-4920-01A-01D-1429-08	14120786	77094481	172156140	3	30063											
SLC16A4	9122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110906399	110906399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	110906399	T	C	110906399	3	2	520	1	0	0	0	0	1	0	0	0	14423	1580	55	3	14	3	SLC16A4	1	110906399	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	33811918	110906399	138344222	4	30064											
CASQ2	845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	116243998	116243998	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	116243998	G	C	116243998	3	2	520	1	0	0	0	0	1	0	0	0	2683	971	34	4	139	4	CASQ2	1	116243998	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	5337599	116243998	133006623	5	30065											
NOTCH2	4853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	120462002	120462002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	120462002	G	T	120462002	3	4	520	1	0	0	0	0	1	0	0	0	10555	1203	42	4	1717	4	NOTCH2	1	120462002	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	4218004	120462002	128788619	6	30066											
ADAR	103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154574246	154574246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	154574246	A	G	154574246	3	3	520	1	0	0	0	0	1	0	0	0	281	72	3	3	2864	3	ADAR	1	154574246	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	34112244	154574246	94676375	7	30067											
SEMA4A	64218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156127886	156127886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	156127886	A	G	156127886	3	3	520	1	0	0	0	0	1	0	0	0	14044	14	1	3	336	3	SEMA4A	1	156127886	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	1553640	156127886	93122735	8	30068											
ETV3	2117	broad.mit.edu;hgsc.bcm.edu	37	1	157105442	157105442	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	157105442	G	A	157105442	2	1	520	1	0	0	0	0	0	0	0	1	5281	1164	41	2		2	ETV3	1	157105442	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	977556	157105442	92145179	9	30069											
ATP1A4	480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160151511	160151511	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	160151511	A	T	160151511	3	4	520	1	0	0	0	0	1	0	0	0	1131	130	5	5	2848	5	ATP1A4	1	160151511	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	3046069	160151511	89099110	10	30070											
FAM5B	57795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	177249817	177249817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	177249817	T	C	177249817	3	2	520	1	0	0	0	0	1	0	0	0	5600	1841	64	3	1531	3	FAM5B	1	177249817	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	17098306	177249817	72000804	11	30071											
C1orf14	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	182908433	182908433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	182908433	A	C	182908433	3	2	520	1	0	0	0	0	1	0	0	0	2002	126	5	5	1031	5	C1orf14	1	182908433	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	5658616	182908433	66342188	12	30072											
GPATCH2	55105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	217665062	217665062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	217665062	T	C	217665062	3	2	520	1	0	0	0	0	1	0	0	0	6598	1617	56	3	361	3	GPATCH2	1	217665062	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	34756629	217665062	31585559	13	30073											
EPHX1	2052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	226027665	226027665	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	226027665	G	A	226027665	2	1	520	1	0	0	0	0	0	0	0	1	5181	991	35	2		2	EPHX1	1	226027665	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	8362603	226027665	23222956	14	30074											
RYR2	6262	broad.mit.edu;hgsc.bcm.edu	37	1	237586481	237586481	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	237586481	A	T	237586481	3	4	520	1	0	0	0	0	1	0	0	0	13782	43	2	5	984	5	RYR2	1	237586481	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	11558816	237586481	11664140	15	30075											
AHCTF1	25909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247061603	247061603	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	247061603	G	T	247061603	2	4	520	1	0	0	0	0	0	0	0	1	408	1277	45	4		4	AHCTF1	1	247061603	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	9475122	247061603	2189018	16	30076											
EIF2AK2	5610	broad.mit.edu;ucsc.edu	37	2	37366825	37366825	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	37366825	G	G	37366825	3	3	520	1	0	0	0	0	1	0	0	0	4999	1490	52	5	1238	5	EIF2AK2	2	37366825	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08		37366825	205832548	17	30077											
ELMOD3	84173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	85598666	85598666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	85598666	G	T	85598666	3	4	520	1	0	0	0	0	1	0	0	0	5072	1241	43	4	614	4	ELMOD3	2	85598666	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	48231841	85598666	157600707	18	30078											
ARID5A	10865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	97217964	97217964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	97217964	C	A	97217964	3	1	520	1	0	0	0	0	1	0	0	0	921	565	20	4	1725	4	ARID5A	2	97217964	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	11619298	97217964	145981409	19	30079											
ST6GAL2	84620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	107460175	107460175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	107460175	C	T	107460175	3	4	520	1	0	0	0	0	1	0	0	0	15234	652	23	1	1437	1	ST6GAL2	2	107460175	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	10242211	107460175	135739198	20	30080											
PTPN18	26469	hgsc.bcm.edu;ucsc.edu	37	2	131128292	131128292	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	131128292	C	-	131128292	7	5	520	1	0	1	0	1	0	0	0	0	12795	564	20	0	809	0	PTPN18	2	131128292	Frame_Shift_Del	DEL	C	TCGA-CJ-4920-01A-01D-1429-08	23668117	131128292	112071081	21	30081											
FAM123C	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	131521736	131521736	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	131521736	A	T	131521736	2	4	520	1	0	0	0	0	0	0	0	1	5428	117	5	5		5	FAM123C	2	131521736	Silent	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	393444	131521736	111677637	22	30082											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170103247	170103247	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	170103247	T	A	170103247	3	1	520	1	0	0	0	0	1	0	0	0	8963	1435	50	5	11045	5	LRP2	2	170103247	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	38581511	170103247	73096126	23	30083											
ZAK	51776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	174131419	174131419	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	174131419	C	-	174131419	7	5	520	1	0	1	0	1	0	0	0	0	17524	855	30	0	2803	0	ZAK	2	174131419	Frame_Shift_Del	DEL	C	TCGA-CJ-4920-01A-01D-1429-08	4028172	174131419	69067954	24	30084											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179490104	179490104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	179490104	C	T	179490104	3	4	520	1	0	0	0	0	1	0	0	0	16747	855	30	2	63737	2	TTN	2	179490104	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	5358685	179490104	63709269	25	30085											
MARS2	92935	hgsc.bcm.edu	37	2	198570416	198570416	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	198570416	G	C	198570416	3	2	520	1	0	0	0	0	1	0	0	0	9324	1232	43	4	289	4	MARS2	2	198570416	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	19080312	198570416	44628957	26	30086											
CRYGB	1419	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	209007637	209007637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	209007637	G	T	209007637	3	4	520	1	0	0	0	0	1	0	0	0	3917	1333	46	4	278	4	CRYGB	2	209007637	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	10437221	209007637	34191736	27	30087											
HJURP	55355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234754423	234754423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	234754423	T	A	234754423	3	1	520	1	0	0	0	0	1	0	0	0	7196	1841	64	5	1816	5	HJURP	2	234754423	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	25746786	234754423	8444950	28	30088											
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238280464	238280464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	238280464	C	A	238280464	3	1	520	1	0	0	0	0	1	0	0	0	3703	797	28	4	5528	4	COL6A3	2	238280464	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	3526041	238280464	4918909	29	30089											
OGG1	4968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9792055	9792055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	9792055	C	A	9792055	3	1	520	1	0	0	0	0	1	0	0	0	10852	623	22	4	87	4	OGG1	3	9792055	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08		9792055	188230375	30	30090											
VHL	7428	broad.mit.edu	37	3	10183725	10183725	+	Missense_Mutation	SNP	C	T	T	rs5030826	alternate_allele	TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	10183725	T	T	10183725	3	4	520	1	0	0	0	0	1	0	0	0	17174	893	31	1	196	1	VHL	3	10183725	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	391670	10183725	187838705	31	30091											
SCN11A	11280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38962724	38962724	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	38962724	G	T	38962724	2	4	520	1	0	0	0	0	0	0	0	1	13926	987	35	4		4	SCN11A	3	38962724	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	28778999	38962724	159059706	32	30092											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52651349	52651353	+	Frame_Shift_Del	DEL	CACCA	CACCA	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	CACCA	CACCA	CACCA	-	CACCA	CACCA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	52651353	CACCA	-	52651349	7	5	520	1	0	1	0	1	0	0	0	0	11498	835	29	0	3221	0	PBRM1	3	52651349	Frame_Shift_Del	DEL	CACCA	TCGA-CJ-4920-01A-01D-1429-08	13688625	52651349	145371081	33	30093											
FAM19A4	151647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	68788346	68788346	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	68788346	G	C	68788346	2	2	520	1	0	0	0	0	0	0	0	1	5538	1335	47	4		4	FAM19A4	3	68788346	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	16136997	68788346	129234084	34	30094											
DPPA2	151871	hgsc.bcm.edu;ucsc.edu	37	3	109031497	109031503	+	Frame_Shift_Del	DEL	AAATCAC	AAATCAC	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	AAATCAC	AAATCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	109031503	AAATCAC	-	109031497	7	5	520	1	0	1	0	1	0	0	0	0	4736	11	1	0	844	0	DPPA2	3	109031497	Frame_Shift_Del	DEL	AAATCAC	TCGA-CJ-4920-01A-01D-1429-08	40243151	109031497	88990933	35	30095											
POLQ	10721	broad.mit.edu	37	3	121263752	121263752	+	Silent	SNP	T	C	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	121263752	C	C	121263752	2	2	520	1	0	0	0	0	0	0	0	1	12215	1565	54	3		3	POLQ	3	121263752	Silent	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	12232255	121263752	76758678	36	30096											
UROC1	131669	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	126216954	126216954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	126216954	C	T	126216954	3	4	520	1	0	0	0	0	1	0	0	0	17040	855	30	2	680	2	UROC1	3	126216954	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	4953202	126216954	71805476	37	30097											
MFN1	55669	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	179096586	179096586	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	179096586	C	A	179096586	4	1	520	1	0	0	0	0	0	1	0	0	9530	838	29	4	1696	4	MFN1	3	179096586	Nonsense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	52879632	179096586	18925844	38	30098											
MCCC1	56922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	182759359	182759359	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	182759359	C	G	182759359	2	3	520	1	0	0	0	0	0	0	0	1	9381	726	26	4		4	MCCC1	3	182759359	Silent	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	3662773	182759359	15263071	39	30099											
EIF4G1	1981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184049812	184049812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	184049812	A	G	184049812	3	3	520	1	0	0	0	0	1	0	0	0	5038	188	7	3	4674	3	EIF4G1	3	184049812	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	1290453	184049812	13972618	40	30100											
OSTalpha	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	195954575	195954575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	195954575	G	A	195954575	3	1	520	1	0	0	0	0	1	0	0	0	11307	1145	40	1	343	1	OSTalpha	3	195954575	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	11904763	195954575	2067855	41	30101											
MFSD7	84179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	677418	677418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	677418	C	T	677418	3	4	520	1	0	0	0	0	1	0	0	0	9544	739	26	2	722	2	MFSD7	4	677418	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08		677418	190476858	42	30102											
ATP10D	57205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	47559972	47559972	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	47559972	A	T	47559972	3	4	520	1	0	0	0	0	1	0	0	0	1118	246	9	5	2158	5	ATP10D	4	47559972	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	46882554	47559972	143594304	43	30103											
FRYL	285527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	48566087	48566087	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	48566087	C	G	48566087	3	3	520	1	0	0	0	0	1	0	0	0	6071	477	17	4	5703	4	FRYL	4	48566087	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	1006115	48566087	142588189	44	30104											
TECRL	253017	broad.mit.edu;hgsc.bcm.edu	37	4	65274893	65274893	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	65274893	G	A	65274893	2	1	520	1	0	0	0	0	0	0	0	1	15758	1020	36	2		2	TECRL	4	65274893	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	16708806	65274893	125879383	45	30105											
THAP9	79725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83838940	83838940	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	83838940	C	G	83838940	3	3	520	1	0	0	0	0	1	0	0	0	15863	564	20	4	1593	4	THAP9	4	83838940	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	18564047	83838940	107315336	46	30106											
ANKRD50	57182	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	125631599	125631599	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	125631599	A	C	125631599	3	2	520	1	0	0	0	0	1	0	0	0	677	14	1	5	4233	5	ANKRD50	4	125631599	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	41792659	125631599	65522677	47	30107											
NR3C2	4306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	149356735	149356735	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	149356735	T	G	149356735	2	3	520	1	0	0	0	0	0	0	0	1	10638	1799	63	5		5	NR3C2	4	149356735	Silent	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	23725136	149356735	41797541	48	30108											
CDH6	1004	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	31299715	31299715	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	31299715	A	T	31299715	3	4	520	1	0	0	0	0	1	0	0	0	3116	275	10	5	802	5	CDH6	5	31299715	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08		31299715	149615545	49	30109											
MAP3K1	4214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	56160679	56160679	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	56160679	T	G	56160679	4	3	520	1	0	0	0	0	0	1	0	0	9250	1764	61	5	967	5	MAP3K1	5	56160679	Nonsense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	24860964	56160679	124754581	50	30110											
CDX1	1044	broad.mit.edu;hgsc.bcm.edu	37	5	149563073	149563073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	149563073	C	G	149563073	3	3	520	1	0	0	0	0	1	0	0	0	3184	768	27	4	638	4	CDX1	5	149563073	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	93402394	149563073	31352187	51	30111											
ADAMTS2	9509	broad.mit.edu;hgsc.bcm.edu	37	5	178771139	178771139	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	178771139	C	G	178771139	3	3	520	1	0	0	0	0	1	0	0	0	265	864	30	4	3631	4	ADAMTS2	5	178771139	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	29208066	178771139	2144121	52	30112											
CANX	821	broad.mit.edu;hgsc.bcm.edu	37	5	179149818	179149818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	179149818	C	A	179149818	3	1	520	1	0	0	0	0	1	0	0	0	2620	623	22	4	1234	4	CANX	5	179149818	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	378679	179149818	1765442	53	30113											
HIVEP1	3096	hgsc.bcm.edu;ucsc.edu	37	6	12161803	12161803	+	Frame_Shift_Del	DEL	C	C	-	rs34103769		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	12161803	C	-	12161803	7	5	520	1	0	1	0	1	0	0	0	0	7193	507	18	0	6645	0	HIVEP1	6	12161803	Frame_Shift_Del	DEL	C	TCGA-CJ-4920-01A-01D-1429-08		12161803	158953264	54	30114											
BAT1	0	broad.mit.edu;hgsc.bcm.edu	37	6	31507024	31507024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	31507024	A	G	31507024	3	3	520	1	0	0	0	0	1	0	0	0	1318	101	4	3	1083	3	BAT1	6	31507024	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	19345221	31507024	139608043	55	30115											
PTK7	5754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43107181	43107181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	43107181	G	T	43107181	3	4	520	1	0	0	0	0	1	0	0	0	12776	1020	36	4	1574	4	PTK7	6	43107181	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	11600157	43107181	128007886	56	30116											
ENPP3	5169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	131995388	131995388	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	131995388	A	G	131995388	2	3	520	1	0	0	0	0	0	0	0	1	5133	40	2	3		3	ENPP3	6	131995388	Silent	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	88888207	131995388	39119679	57	30117											
PTPRZ1	5803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	121650685	121650685	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	121650685	C	G	121650685	3	3	520	1	0	0	0	0	1	0	0	0	12827	826	29	4	1631	4	PTPRZ1	7	121650685	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08		121650685	37487978	58	30118											
NCAPG2	54892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	158447311	158447311	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	158447311	G	T	158447311	2	4	520	1	0	0	0	0	0	0	0	1	10215	1086	38	4		4	NCAPG2	7	158447311	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	36796626	158447311	691352	59	30119											
MSR1	4481	broad.mit.edu	37	8	16026114	16026114	+	Silent	SNP	G	T	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	16026114	T	T	16026114	2	4	520	1	0	0	0	0	0	0	0	1	9893	987	35	4		4	MSR1	8	16026114	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08		16026114	130337908	60	30120											
ARFGEF1	10565	hgsc.bcm.edu;ucsc.edu	37	8	68137214	68137214	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	68137214	A	-	68137214	7	5	520	1	0	1	0	1	0	0	0	0	852	159	6	0	1461	0	ARFGEF1	8	68137214	Frame_Shift_Del	DEL	A	TCGA-CJ-4920-01A-01D-1429-08	52111100	68137214	78226808	61	30121											
SULF1	23213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	70514054	70514054	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	70514054	C	G	70514054	3	3	520	1	0	0	0	0	1	0	0	0	15382	507	18	4	1073	4	SULF1	8	70514054	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	2376840	70514054	75849968	62	30122											
INTS8	55656	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	95861709	95861709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	95861709	A	C	95861709	3	2	520	1	0	0	0	0	1	0	0	0	7791	101	4	5	1322	5	INTS8	8	95861709	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	25347655	95861709	50502313	63	30123											
EFR3A	23167	broad.mit.edu;hgsc.bcm.edu	37	8	132956999	132956999	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	132956999	T	G	132956999	3	3	520	1	0	0	0	0	1	0	0	0	4960	1609	56	5	105	5	EFR3A	8	132956999	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	37095290	132956999	13407023	64	30124											
ALDH1B1	219	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	38395753	38395753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	38395753	G	T	38395753	3	4	520	1	0	0	0	0	1	0	0	0	493	1087	38	4	10	4	ALDH1B1	9	38395753	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08		38395753	102817678	65	30125											
TRPM6	140803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	77435329	77435329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	77435329	T	G	77435329	3	3	520	1	0	0	0	0	1	0	0	0	16602	1580	55	5	5167	5	TRPM6	9	77435329	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	39039576	77435329	63778102	66	30126											
KIF27	55582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	86518027	86518027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	86518027	C	A	86518027	3	1	520	1	0	0	0	0	1	0	0	0	8303	855	30	4	2859	4	KIF27	9	86518027	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	9082698	86518027	54695404	67	30127											
C9orf5	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	111855820	111855820	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	111855820	T	G	111855820	3	3	520	1	0	0	0	0	1	0	0	0	2488	1725	60	5	1848	5	C9orf5	9	111855820	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	25337793	111855820	29357611	68	30128											
EPB41L4B	54566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	111979310	111979310	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	111979310	G	C	111979310	3	2	520	1	0	0	0	0	1	0	0	0	5158	1357	47	4	1221	4	EPB41L4B	9	111979310	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	123490	111979310	29234121	69	30129											
PTPN3	5774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	112172526	112172526	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	112172526	G	A	112172526	4	1	520	1	0	0	0	0	0	1	0	0	12802	1357	47	2	1306	2	PTPN3	9	112172526	Nonsense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	193216	112172526	29040905	70	30130											
PAPPA	5069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	118982390	118982390	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	118982390	A	T	118982390	3	4	520	1	0	0	0	0	1	0	0	0	11439	333	12	5	2111	5	PAPPA	9	118982390	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	6809864	118982390	22231041	71	30131											
ZER1	10444	broad.mit.edu	37	9	131514950	131514950	+	Splice_Site	SNP	A	C	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	131514950	C	C	131514950	5	2	520	1	0	0	0	0	0	0	1	0	17637	173	6	5	1423	5	ZER1	9	131514950	Splice_Site	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	12532560	131514950	9698481	72	30132											
PRDM12	59335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133542139	133542139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	133542139	C	T	133542139	3	4	520	1	0	0	0	0	1	0	0	0	12463	739	26	2	374	2	PRDM12	9	133542139	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	2027189	133542139	7671292	73	30133											
ABL1	25	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133750263	133750263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	133750263	C	T	133750263	3	4	520	1	0	0	0	0	1	0	0	0	92	797	28	2	1260	2	ABL1	9	133750263	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	208124	133750263	7463168	74	30134											
YME1L1	10730	broad.mit.edu	37	10	27437893	27437893	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	27437893	A	A	27437893	3	1	520	1	0	0	0	0	1	0	0	0	17499	1294	45	2	2287	2	YME1L1	10	27437893	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08		27437893	108096854	75	30135											
KIAA0913	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75556685	75556685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	75556685	T	C	75556685	3	2	520	1	0	0	0	0	1	0	0	0	8207	1551	54	3	3249	3	KIAA0913	10	75556685	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	48118792	75556685	59978062	76	30136											
FAM190B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	86130950	86130950	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	86130950	A	-	86130950	7	5	520	1	0	1	0	1	0	0	0	0	5526	131	5	0	144	0	FAM190B	10	86130950	Frame_Shift_Del	DEL	A	TCGA-CJ-4920-01A-01D-1429-08	10574265	86130950	49403797	77	30137											
CYP2C19	1557	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96580386	96580386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	96580386	A	C	96580386	3	2	520	1	0	0	0	0	1	0	0	0	4168	304	11	5	975	5	CYP2C19	10	96580386	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	10449436	96580386	38954361	78	30138											
FAM178A	55719	hgsc.bcm.edu;ucsc.edu	37	10	102676845	102676845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	102676845	A	-	102676845	7	5	520	1	0	1	0	1	0	0	0	0	5507	363	13	0	713	0	FAM178A	10	102676845	Frame_Shift_Del	DEL	A	TCGA-CJ-4920-01A-01D-1429-08	6096459	102676845	32857902	79	30139	366	2									
FAM178A	55719	hgsc.bcm.edu	37	10	102676847	102676847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	102676847	A	T	102676847	3	4	520	1	0	0	0	0	1	0	0	0	5507	98	4	5	715	5	FAM178A	10	102676847	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	2	102676847	32857900	80	30140	366	2									
KRTAP5-4	387267	broad.mit.edu	37	11	1643006	1643006	+	Silent	SNP	G	C	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	1643006	C	C	1643006	2	2	520	1	0	0	0	0	0	0	0	1	8570	958	34	4		4	KRTAP5-4	11	1643006	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08		1643006	133363510	81	30141											
OR52L1	338751	broad.mit.edu;hgsc.bcm.edu	37	11	6007950	6007950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	6007950	G	A	6007950	3	1	520	1	0	0	0	0	1	0	0	0	11132	1232	43	2	782	2	OR52L1	11	6007950	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	4364944	6007950	128998566	82	30142											
QSER1	79832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32955024	32955024	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	32955024	C	T	32955024	2	4	520	1	0	0	0	0	0	0	0	1	12895	816	29	2		2	QSER1	11	32955024	Silent	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	26947074	32955024	102051492	83	30143											
C11orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	33565649	33565649	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	33565649	C	-	33565649	7	5	520	1	0	1	0	1	0	0	0	0	1642	507	18	0	1651	0	C11orf41	11	33565649	Frame_Shift_Del	DEL	C	TCGA-CJ-4920-01A-01D-1429-08	610625	33565649	101440867	84	30144											
DYNC2H1	79659	broad.mit.edu	37	11	103093809	103093809	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	103093809	G	G	103093809	4	3	520	1	0	0	0	0	0	1	0	0	4848	1764	61	5	9581	5	DYNC2H1	11	103093809	Nonsense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	69528160	103093809	31912707	85	30145											
TTC12	54970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	113230094	113230094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	113230094	G	T	113230094	4	4	520	1	0	0	0	0	0	1	0	0	16691	1291	45	4	1518	4	TTC12	11	113230094	Nonsense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	10136285	113230094	21776422	86	30146											
ANKK1	255239	broad.mit.edu;hgsc.bcm.edu	37	11	113270032	113270032	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	113270032	C	T	113270032	2	4	520	1	0	0	0	0	0	0	0	1	631	842	30	2		2	ANKK1	11	113270032	Silent	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	39938	113270032	21736484	87	30147											
WNK1	65125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	862733	862733	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	862733	T	A	862733	3	1	520	1	0	0	0	0	1	0	0	0	17389	1464	51	5	4	5	WNK1	12	862733	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08		862733	132989162	88	30148											
APOBEC1	339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7802168	7802168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	7802168	A	G	7802168	3	3	520	1	0	0	0	0	1	0	0	0	787	449	16	3	28	3	APOBEC1	12	7802168	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	6939435	7802168	126049727	89	30149											
A2M	2	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9225307	9225307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	9225307	G	T	9225307	3	4	520	1	0	0	0	0	1	0	0	0	4	1348	47	4	535	4	A2M	12	9225307	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	1423139	9225307	124626588	90	30150											
NACA	4666	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57114669	57114669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	57114669	G	C	57114669	3	2	520	1	0	0	0	0	1	0	0	0	10140	1020	36	4	5619	4	NACA	12	57114669	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	47889362	57114669	76737226	91	30151											
SART3	9733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	108929135	108929136	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	108929136	-	T	108929135	7	5	520	1	0	1	1	0	0	0	0	0	13860	695	24	0	1367	0	SART3	12	108929135	Frame_Shift_Ins	INS	-	TCGA-CJ-4920-01A-01D-1429-08	51814466	108929135	24922760	92	30152											
COQ5	84274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	120954469	120954469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	120954469	C	T	120954469	3	4	520	1	0	0	0	0	1	0	0	0	3750	922	32	2	528	2	COQ5	12	120954469	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	12025334	120954469	12897426	93	30153											
GPR133	283383	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	131616270	131616270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	131616270	G	T	131616270	3	4	520	1	0	0	0	0	1	0	0	0	6650	1275	44	4	2258	4	GPR133	12	131616270	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	10661801	131616270	2235625	94	30154											
HSPH1	10808	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	31729705	31729705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	31729705	C	G	31729705	3	3	520	1	0	0	0	0	1	0	0	0	7438	680	24	4	2388	4	HSPH1	13	31729705	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08		31729705	83440173	95	30155											
N4BP2L2	10443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33110320	33110320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	33110320	A	G	33110320	3	3	520	1	0	0	0	0	1	0	0	0	10119	72	3	3	2787	3	N4BP2L2	13	33110320	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	1380615	33110320	82059558	96	30156											
NALCN	259232	hgsc.bcm.edu;ucsc.edu	37	13	101797201	101797201	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	101797201	A	-	101797201	7	5	520	1	0	1	0	1	0	0	0	0	10155	372	13	0	3446	0	NALCN	13	101797201	Frame_Shift_Del	DEL	A	TCGA-CJ-4920-01A-01D-1429-08	68686881	101797201	13372677	97	30157											
SNW1	22938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	78184796	78184796	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	78184796	A	G	78184796	2	3	520	1	0	0	0	0	0	0	0	1	14892	446	16	3		3	SNW1	14	78184796	Silent	SNP	A	TCGA-CJ-4920-01A-01D-1429-08		78184796	29164744	98	30158											
EML5	161436	broad.mit.edu;hgsc.bcm.edu	37	14	89202708	89202708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	89202708	C	G	89202708	3	3	520	1	0	0	0	0	1	0	0	0	5102	695	24	4	5032	4	EML5	14	89202708	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	11017912	89202708	18146832	99	30159											
KIAA1409	0	broad.mit.edu;hgsc.bcm.edu	37	14	94129061	94129061	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	94129061	G	A	94129061	5	1	520	1	0	0	0	0	0	0	1	0	8237	1275	44	2	6373	2	KIAA1409	14	94129061	Splice_Site	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	4926353	94129061	13220479	100	30160											
BCL11B	64919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	99640573	99640573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	99640573	C	T	99640573	3	4	520	1	0	0	0	0	1	0	0	0	1364	797	28	2	88	2	BCL11B	14	99640573	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	5511512	99640573	7708967	101	30161											
HSP90AA1	3320	broad.mit.edu;hgsc.bcm.edu	37	14	102552583	102552583	+	Missense_Mutation	SNP	G	G	C	rs11547522	alternate_allele	TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	102552583	G	C	102552583	3	2	520	1	0	0	0	0	1	0	0	0	7408	933	33	4	2105	4	HSP90AA1	14	102552583	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	2912010	102552583	4796957	102	30162											
MKRN3	7681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	23811293	23811293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	23811293	T	A	23811293	3	1	520	1	0	0	0	0	1	0	0	0	9615	1783	62	5	366	5	MKRN3	15	23811293	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08		23811293	78720099	103	30163											
RAD51	5888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41022091	41022091	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	41022091	A	T	41022091	3	4	520	1	0	0	0	0	1	0	0	0	12998	130	5	5	970	5	RAD51	15	41022091	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	17210798	41022091	61509301	104	30164											
CYP19A1	1588	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51514629	51514629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	51514629	G	A	51514629	3	1	520	1	0	0	0	0	1	0	0	0	4150	1059	37	1	990	1	CYP19A1	15	51514629	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	10492538	51514629	51016763	105	30165											
WDR72	256764	hgsc.bcm.edu;ucsc.edu	37	15	53907894	53907895	+	Frame_Shift_Ins	INS	-	-	TTCAT	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	TTCAT	53907895	-	TTCAT	53907894	7	5	520	1	0	1	1	0	0	0	0	0	17334	913	32	0	823	0	WDR72	15	53907894	Frame_Shift_Ins	INS	-	TCGA-CJ-4920-01A-01D-1429-08	2393265	53907894	48623498	106	30166											
PRTG	283659	hgsc.bcm.edu;ucsc.edu	37	15	55971529	55971529	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	55971529	T	-	55971529	7	5	520	1	0	1	0	1	0	0	0	0	12648	1493	52	0	2420	0	PRTG	15	55971529	Frame_Shift_Del	DEL	T	TCGA-CJ-4920-01A-01D-1429-08	2063635	55971529	46559863	107	30167											
CSPG4	1464	hgsc.bcm.edu	37	15	75982360	75982360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	75982360	G	A	75982360	3	1	520	1	0	0	0	0	1	0	0	0	3962	1203	42	2	5954	2	CSPG4	15	75982360	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	20010831	75982360	26549032	108	30168											
C15orf40	123207	hgsc.bcm.edu	37	15	83677271	83677271	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	83677271	A	-	83677271	7	5	520	1	0	1	0	1	0	0	0	0	1796	131	5	0	546	0	C15orf40	15	83677271	Frame_Shift_Del	DEL	A	TCGA-CJ-4920-01A-01D-1429-08	7694911	83677271	18854121	109	30169											
PDIA2	64714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	336870	336870	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	336870	T	A	336870	2	1	520	1	0	0	0	0	0	0	0	1	11675	1596	56	5		5	PDIA2	16	336870	Silent	SNP	T	TCGA-CJ-4920-01A-01D-1429-08		336870	90017883	110	30170											
AXIN1	8312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	396564	396564	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	396564	G	A	396564	2	1	520	1	0	0	0	0	0	0	0	1	1236	1306	46	2		2	AXIN1	16	396564	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	59694	396564	89958189	111	30171											
GSPT1	2935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	11971401	11971401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	11971401	C	T	11971401	3	4	520	1	0	0	0	0	1	0	0	0	6833	478	17	2	464	2	GSPT1	16	11971401	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	11574837	11971401	78383352	112	30172											
BCKDK	10295	hgsc.bcm.edu;ucsc.edu	37	16	31123280	31123280	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	31123280	C	-	31123280	7	5	520	1	0	1	0	1	0	0	0	0	1361	506	18	0	1064	0	BCKDK	16	31123280	Frame_Shift_Del	DEL	C	TCGA-CJ-4920-01A-01D-1429-08	19151879	31123280	59231473	113	30173											
OGFOD1	55239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	56485531	56485531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	56485531	G	C	56485531	3	2	520	1	0	0	0	0	1	0	0	0	10848	1348	47	4	9	4	OGFOD1	16	56485531	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	25362251	56485531	33869222	114	30174											
DUS2L	54920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68071947	68071947	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	68071947	T	A	68071947	2	1	520	1	0	0	0	0	0	0	0	1	4808	1538	54	5		5	DUS2L	16	68071947	Silent	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	11586416	68071947	22282806	115	30175											
RPH3AL	9501	broad.mit.edu;hgsc.bcm.edu	37	17	169255	169255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	169255	C	T	169255	3	4	520	1	0	0	0	0	1	0	0	0	13565	623	22	2	664	2	RPH3AL	17	169255	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08		169255	81025955	116	30176											
CAMTA2	23125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4872277	4872277	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	4872277	C	T	4872277	5	4	520	1	0	0	0	0	0	0	1	0	2616	927	32	2	196	2	CAMTA2	17	4872277	Splice_Site	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	4703022	4872277	76322933	117	30177											
PMP22	5376	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	15142905	15142905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	15142905	T	C	15142905	3	2	520	1	0	0	0	0	1	0	0	0	12146	1696	59	3	288	3	PMP22	17	15142905	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	10270628	15142905	66052305	118	30178											
TANC2	26115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61498351	61498351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	61498351	G	A	61498351	3	1	520	1	0	0	0	0	1	0	0	0	15557	1174	41	2	5106	2	TANC2	17	61498351	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	46355446	61498351	19696859	119	30179											
FTSJ3	117246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61898808	61898808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	61898808	A	-	61898808	7	5	520	1	0	1	0	1	0	0	0	0	6096	246	9	0	775	0	FTSJ3	17	61898808	Frame_Shift_Del	DEL	A	TCGA-CJ-4920-01A-01D-1429-08	400457	61898808	19296402	120	30180											
GNA13	10672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	63010386	63010386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	63010386	T	G	63010386	3	3	520	1	0	0	0	0	1	0	0	0	6508	1406	49	5	14	5	GNA13	17	63010386	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	1111578	63010386	18184824	121	30181											
RECQL5	9400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73657711	73657711	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	73657711	A	T	73657711	2	4	520	1	0	0	0	0	0	0	0	1	13216	146	6	5		5	RECQL5	17	73657711	Silent	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	10647325	73657711	7537499	122	30182											
AZI1	22994	broad.mit.edu	37	17	79169644	79169644	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	79169644	A	A	79169644	3	1	520	1	0	0	0	0	1	0	0	0	1240	796	28	4	1279	4	AZI1	17	79169644	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	5511933	79169644	2025566	123	30183											
EMILIN2	84034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	2890714	2890714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	2890714	A	G	2890714	3	3	520	1	0	0	0	0	1	0	0	0	5096	275	10	3	603	3	EMILIN2	18	2890714	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08		2890714	75186534	124	30184											
MYO9B	4650	hgsc.bcm.edu	37	19	17311226	17311226	+	Missense_Mutation	SNP	G	G	A	rs117099942	byfrequency;by1000genomes	TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	17311226	G	A	17311226	3	1	520	1	0	0	0	0	1	0	0	0	10092	1232	43	2	4457	2	MYO9B	19	17311226	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08		17311226	41817757	125	30185											
ATP13A1	57130	broad.mit.edu;hgsc.bcm.edu	37	19	19767887	19767887	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	19767887	C	A	19767887	2	1	520	1	0	0	0	0	0	0	0	1	1123	581	21	4		4	ATP13A1	19	19767887	Silent	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	2456661	19767887	39361096	126	30186											
CEBPG	1054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	33870405	33870405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	33870405	C	T	33870405	3	4	520	1	0	0	0	0	1	0	0	0	3205	710	25	2	262	2	CEBPG	19	33870405	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	14102518	33870405	25258578	127	30187											
GRAMD1A	57655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	35501012	35501012	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	35501012	G	T	35501012	2	4	520	1	0	0	0	0	0	0	0	1	6754	1306	46	4		4	GRAMD1A	19	35501012	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	1630607	35501012	23627971	128	30188											
NPHS1	4868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36340513	36340513	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	36340513	A	C	36340513	3	2	520	1	0	0	0	0	1	0	0	0	10589	157	6	5	3170	5	NPHS1	19	36340513	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	839501	36340513	22788470	129	30189											
SULT2A1	6822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	48385434	48385434	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	48385434	A	G	48385434	2	3	520	1	0	0	0	0	0	0	0	1	15393	11	1	3		3	SULT2A1	19	48385434	Silent	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	12044921	48385434	10743549	130	30190											
MYH14	79784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50753042	50753042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	50753042	C	G	50753042	3	3	520	1	0	0	0	0	1	0	0	0	10040	681	24	4	1668	4	MYH14	19	50753042	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	2367608	50753042	8375941	131	30191											
NLRP4	147945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56369055	56369055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	56369055	A	G	56369055	3	3	520	1	0	0	0	0	1	0	0	0	10486	449	16	3	302	3	NLRP4	19	56369055	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	5616013	56369055	2759928	132	30192											
RIMS4	140730	broad.mit.edu;hgsc.bcm.edu	37	20	43386410	43386410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	43386410	C	T	43386410	3	4	520	1	0	0	0	0	1	0	0	0	13383	855	30	2	469	2	RIMS4	20	43386410	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08		43386410	19639110	133	30193											
TMPRSS15	5651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	19698767	19698767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	19698767	A	T	19698767	3	4	520	1	0	0	0	0	1	0	0	0	16258	420	15	5	1196	5	TMPRSS15	21	19698767	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08		19698767	28431128	134	30194											
CCT8	10694	broad.mit.edu;hgsc.bcm.edu	37	21	30442596	30442596	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	30442596	T	A	30442596	3	1	520	1	0	0	0	0	1	0	0	0	2962	1838	64	5	1579	5	CCT8	21	30442596	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	10743829	30442596	17687299	135	30195											
DOPEY2	9980	hgsc.bcm.edu;ucsc.edu	37	21	37617853	37617854	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	37617854	TC	-	37617853	7	5	520	1	0	1	0	1	0	0	0	0	4710	1783	62	0	3645	0	DOPEY2	21	37617853	Frame_Shift_Del	DEL	TC	TCGA-CJ-4920-01A-01D-1429-08	7175257	37617853	10512042	136	30196											
CCDC116	164592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21989453	21989453	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	21989453	C	T	21989453	2	4	520	1	0	0	0	0	0	0	0	1	2755	726	26	2		2	CCDC116	22	21989453	Silent	SNP	C	TCGA-CJ-4920-01A-01D-1429-08		21989453	29315113	137	30197											
SBF1	6305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50903133	50903133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	G	50903133	A	G	50903133	3	3	520	1	0	0	0	0	1	0	0	0	13871	391	14	3	4327	3	SBF1	22	50903133	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	28913680	50903133	401433	138	30198											
CDKL5	6792	broad.mit.edu;ucsc.edu	37	X	18622812	18622812	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	18622812	A	A	18622812	3	1	520	1	0	0	0	0	1	0	0	0	3159	1059	37	1	1810	1	CDKL5	23	18622812	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08		18622812	136647748	139	30199											
TFE3	7030	broad.mit.edu	37	X	48900725	48900725	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	48900725	A	A	48900725	3	1	520	1	0	0	0	0	1	0	0	0	15812	855	30	4	1739	4	TFE3	23	48900725	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	30277913	48900725	106369835	140	30200											
SMC1A	8243	hgsc.bcm.edu;ucsc.edu	37	X	53430820	53430820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	-	53430820	T	-	53430820	7	5	520	1	0	1	0	1	0	0	0	0	14794	1490	52	0	1547	0	SMC1A	23	53430820	Frame_Shift_Del	DEL	T	TCGA-CJ-4920-01A-01D-1429-08	4530095	53430820	101839740	141	30201											
MAGEE1	57692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	75650469	75650469	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	75650469	G	T	75650469	4	4	520	1	0	0	0	0	0	1	0	0	9192	1175	41	4	2148	4	MAGEE1	23	75650469	Nonsense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	22219649	75650469	79620091	142	30202											
PCDH11X	27328	broad.mit.edu;hgsc.bcm.edu	37	X	91873325	91873325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	91873325	C	A	91873325	3	1	520	1	0	0	0	0	1	0	0	0	11515	913	32	4	3578	4	PCDH11X	23	91873325	Missense_Mutation	SNP	C	TCGA-CJ-4920-01A-01D-1429-08	16222856	91873325	63397235	143	30203											
ARMCX6	54470	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	100871360	100871360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	100871360	G	T	100871360	3	4	520	1	0	0	0	0	1	0	0	0	963	1029	36	4	655	4	ARMCX6	23	100871360	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	8998035	100871360	54399200	144	30204											
ARMCX5	64860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101857826	101857826	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	101857826	A	T	101857826	3	4	520	1	0	0	0	0	1	0	0	0	962	275	10	5	759	5	ARMCX5	23	101857826	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	986466	101857826	53412734	145	30205											
ALG13	79868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	110964871	110964871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	110964871	T	A	110964871	3	1	520	1	0	0	0	0	1	0	0	0	515	1696	59	5	1555	5	ALG13	23	110964871	Missense_Mutation	SNP	T	TCGA-CJ-4920-01A-01D-1429-08	9107045	110964871	44305689	146	30206											
HTR2C	3358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	113965887	113965887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	C	113965887	G	C	113965887	3	2	520	1	0	0	0	0	1	0	0	0	7450	1377	48	4	226	4	HTR2C	23	113965887	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	3001016	113965887	41304673	147	30207											
LONRF3	79836	broad.mit.edu;hgsc.bcm.edu	37	X	118108850	118108850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	118108850	G	T	118108850	3	4	520	1	0	0	0	0	1	0	0	0	8903	1203	42	4	109	4	LONRF3	23	118108850	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	4142963	118108850	37161710	148	30208											
TFDP3	51270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	132351883	132351883	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	A	132351883	G	A	132351883	2	1	520	1	0	0	0	0	0	0	0	1	15811	1074	38	1		1	TFDP3	23	132351883	Silent	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	14243033	132351883	22918677	149	30209											
GABRE	2564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151123262	151123262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	151123262	A	T	151123262	3	4	520	1	0	0	0	0	1	0	0	0	6177	420	15	5	92	5	GABRE	23	151123262	Missense_Mutation	SNP	A	TCGA-CJ-4920-01A-01D-1429-08	18771379	151123262	4147298	150	30210											
IRAK1	3654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153278674	153278674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	T	153278674	G	T	153278674	3	4	520	1	0	0	0	0	1	0	0	0	7828	1357	47	4	400	4	IRAK1	23	153278674	Missense_Mutation	SNP	G	TCGA-CJ-4920-01A-01D-1429-08	2155412	153278674	1991886	151	30211											
DNAJC16	23341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	15893684	15893684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	15893684	G	A	15893684	3	1	521	1	0	0	0	0	1	0	0	0	4637	1290	45	2	1919	2	DNAJC16	1	15893684	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08		15893684	233356937	1	30212											
MFSD2A	84879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40430907	40430907	+	Silent	SNP	C	C	T	rs115805986	bycluster;by1000genomes	TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	T	40430907	C	T	40430907	2	4	521	1	0	0	0	0	0	0	0	1	9537	639	23	1		1	MFSD2A	1	40430907	Silent	SNP	C	TCGA-CJ-4923-01A-01D-1429-08	24537223	40430907	208819714	2	30213											
SELENBP1	8991	broad.mit.edu;ucsc.edu	37	1	151339307	151339307	+	Silent	SNP	C	T	T	rs146898667	by1000genomes	TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	T	151339307	T	T	151339307	2	4	521	1	0	0	0	0	0	0	0	1	14027	523	19	1		1	SELENBP1	1	151339307	Silent	SNP	C	TCGA-CJ-4923-01A-01D-1429-08	110908400	151339307	97911314	3	30214											
KHK	3795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27320391	27320391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	T	27320391	G	T	27320391	3	4	521	1	0	0	0	0	1	0	0	0	8156	991	35	4	595	4	KHK	2	27320391	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08		27320391	215878982	4	30215											
NRXN1	9378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	50724674	50724674	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	G	50724674	C	G	50724674	3	3	521	1	0	0	0	0	1	0	0	0	10672	796	28	4	2150	4	NRXN1	2	50724674	Missense_Mutation	SNP	C	TCGA-CJ-4923-01A-01D-1429-08	23404283	50724674	192474699	5	30216											
GPR45	11250	broad.mit.edu	37	2	105859013	105859013	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	T	105859013	T	T	105859013	3	4	521	1	0	0	0	0	1	0	0	0	6703	893	31	1	700	1	GPR45	2	105859013	Missense_Mutation	SNP	C	TCGA-CJ-4923-01A-01D-1429-08	55134339	105859013	137340360	6	30217											
COBLL1	22837	broad.mit.edu;hgsc.bcm.edu	37	2	165551129	165551129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	165551129	A	C	165551129	3	2	521	1	0	0	0	0	1	0	0	0	3656	304	11	5	625	5	COBLL1	2	165551129	Missense_Mutation	SNP	A	TCGA-CJ-4923-01A-01D-1429-08	59692116	165551129	77648244	7	30218											
STK17B	9262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	197002269	197002269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	197002269	C	A	197002269	4	1	521	1	0	0	0	0	0	1	0	0	15303	922	32	4	101	4	STK17B	2	197002269	Nonsense_Mutation	SNP	C	TCGA-CJ-4923-01A-01D-1429-08	31451140	197002269	46197104	8	30219											
IRS1	3667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	227662246	227662246	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	227662246	G	C	227662246	2	2	521	1	0	0	0	0	0	0	0	1	7847	987	35	4		4	IRS1	2	227662246	Silent	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	30659977	227662246	15537127	9	30220											
BAP1	8314	broad.mit.edu	37	3	52437168	52437168	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	52437168	A	A	52437168	4	1	521	1	0	0	0	0	0	1	0	0	1311	1792	62	5	329	5	BAP1	3	52437168	Nonsense_Mutation	SNP	T	TCGA-CJ-4923-01A-01D-1429-08		52437168	145585262	10	30221											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52582140	52582140	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	G	52582140	C	G	52582140	3	3	521	1	0	0	0	0	1	0	0	0	11498	884	31	4	64	4	PBRM1	3	52582140	Missense_Mutation	SNP	C	TCGA-CJ-4923-01A-01D-1429-08	144972	52582140	145440290	11	30222											
KALRN	8997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	123987876	123987876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	G	123987876	A	G	123987876	3	3	521	1	0	0	0	0	1	0	0	0	7982	275	10	3	755	3	KALRN	3	123987876	Missense_Mutation	SNP	A	TCGA-CJ-4923-01A-01D-1429-08	71405736	123987876	74034554	12	30223											
PYDC2	152138	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	191179038	191179038	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	191179038	G	A	191179038	2	1	521	1	0	0	0	0	0	0	0	1	12872	1277	45	2		2	PYDC2	3	191179038	Silent	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	67191162	191179038	6843392	13	30224											
DCHS2	54798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	155155839	155155839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	155155839	T	C	155155839	3	2	521	1	0	0	0	0	1	0	0	0	4290	1783	62	3	154	3	DCHS2	4	155155839	Missense_Mutation	SNP	T	TCGA-CJ-4923-01A-01D-1429-08		155155839	35998437	14	30225											
ZFR	51663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32404076	32404076	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	T	32404076	A	T	32404076	3	4	521	1	0	0	0	0	1	0	0	0	17671	188	7	5	2121	5	ZFR	5	32404076	Missense_Mutation	SNP	A	TCGA-CJ-4923-01A-01D-1429-08		32404076	148511184	15	30226											
PCDH1	5097	broad.mit.edu;ucsc.edu	37	5	141233715	141233715	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	141233715	A	A	141233715	2	1	521	1	0	0	0	0	0	0	0	1	11513	1311	46	2		2	PCDH1	5	141233715	Silent	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	108829639	141233715	39681545	16	30227											
E2F3	1871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	20481597	20481597	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	20481597	C	A	20481597	2	1	521	1	0	0	0	0	0	0	0	1	4870	581	21	4		4	E2F3	6	20481597	Silent	SNP	C	TCGA-CJ-4923-01A-01D-1429-08		20481597	150633470	17	30228											
ZNF184	7738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27420046	27420046	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	27420046	G	C	27420046	4	2	521	1	0	0	0	0	0	1	0	0	17763	1294	45	4	967	4	ZNF184	6	27420046	Nonsense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	6938449	27420046	143695021	18	30229											
SYNJ2	8871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	158497795	158497795	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	G	158497795	A	G	158497795	2	3	521	1	0	0	0	0	0	0	0	1	15465	40	2	3		3	SYNJ2	6	158497795	Silent	SNP	A	TCGA-CJ-4923-01A-01D-1429-08	131077749	158497795	12617272	19	30230											
RUNDC3B	154661	broad.mit.edu;hgsc.bcm.edu	37	7	87436831	87436831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	G	87436831	A	G	87436831	3	3	521	1	0	0	0	0	1	0	0	0	13758	449	16	3	1189	3	RUNDC3B	7	87436831	Missense_Mutation	SNP	A	TCGA-CJ-4923-01A-01D-1429-08		87436831	71701832	20	30231											
CHRM2	1129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	136700123	136700123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	136700123	G	A	136700123	3	1	521	1	0	0	0	0	1	0	0	0	3379	1377	48	2	513	2	CHRM2	7	136700123	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	49263292	136700123	22438540	21	30232											
LUC7L2	51631	broad.mit.edu;ucsc.edu	37	7	139086943	139086943	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	T	139086943	T	T	139086943	4	4	521	1	0	0	0	0	0	1	0	0	9090	247	9	5	330	5	LUC7L2	7	139086943	Nonsense_Mutation	SNP	A	TCGA-CJ-4923-01A-01D-1429-08	2386820	139086943	20051720	22	30233											
VPS13B	157680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	100148945	100148945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	100148945	A	C	100148945	3	2	521	1	0	0	0	0	1	0	0	0	17202	333	12	5	1700	5	VPS13B	8	100148945	Missense_Mutation	SNP	A	TCGA-CJ-4923-01A-01D-1429-08		100148945	46215077	23	30234											
TG	7038	hgsc.bcm.edu;ucsc.edu	37	8	133925416	133925416	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	-	133925416	C	-	133925416	7	5	521	1	0	1	0	1	0	0	0	0	15825	506	18	0	4362	0	TG	8	133925416	Frame_Shift_Del	DEL	C	TCGA-CJ-4923-01A-01D-1429-08	33776471	133925416	12438606	24	30235											
OR4B1	119765	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	48238947	48238947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	G	48238947	A	G	48238947	3	3	521	1	0	0	0	0	1	0	0	0	11051	449	16	3	588	3	OR4B1	11	48238947	Missense_Mutation	SNP	A	TCGA-CJ-4923-01A-01D-1429-08		48238947	86767569	25	30236											
LTBP3	4054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65308037	65308037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	65308037	T	C	65308037	3	2	521	1	0	0	0	0	1	0	0	0	9082	1609	56	3	913	3	LTBP3	11	65308037	Missense_Mutation	SNP	T	TCGA-CJ-4923-01A-01D-1429-08	17069090	65308037	69698479	26	30237											
GPR152	390212	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	67219407	67219407	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	67219407	G	A	67219407	2	1	521	1	0	0	0	0	0	0	0	1	6665	1165	41	2		2	GPR152	11	67219407	Silent	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	1911370	67219407	67787109	27	30238											
NDUFS8	4728	broad.mit.edu;ucsc.edu	37	11	67799656	67799656	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	67799656	A	A	67799656	3	1	521	1	0	0	0	0	1	0	0	0	10305	1580	55	5	40	5	NDUFS8	11	67799656	Missense_Mutation	SNP	T	TCGA-CJ-4923-01A-01D-1429-08	580249	67799656	67206860	28	30239											
BIRC3	330	broad.mit.edu	37	11	102206699	102206699	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	102206699	A	A	102206699	3	1	521	1	0	0	0	0	1	0	0	0	1436	1290	45	2	1349	2	BIRC3	11	102206699	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	34407043	102206699	32799817	29	30240											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	103349892	103349892	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	G	103349892	C	G	103349892	3	3	521	1	0	0	0	0	1	0	0	0	4848	884	31	4	13214	4	DYNC2H1	11	103349892	Missense_Mutation	SNP	C	TCGA-CJ-4923-01A-01D-1429-08	1143193	103349892	31656624	30	30241											
IGSF9B	22997	broad.mit.edu	37	11	133807380	133807380	+	Silent	SNP	G	A	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	133807380	A	A	133807380	2	1	521	1	0	0	0	0	0	0	0	1	7613	1136	40	1		1	IGSF9B	11	133807380	Silent	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	30457488	133807380	1199136	31	30242											
ACTR6	64431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100601498	100601498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	G	100601498	A	G	100601498	3	3	521	1	0	0	0	0	1	0	0	0	216	101	4	3	327	3	ACTR6	12	100601498	Missense_Mutation	SNP	A	TCGA-CJ-4923-01A-01D-1429-08		100601498	33250397	32	30243											
CRY1	1407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	107393578	107393578	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	107393578	G	A	107393578	2	1	521	1	0	0	0	0	0	0	0	1	3905	933	33	2		2	CRY1	12	107393578	Silent	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	6792080	107393578	26458317	33	30244											
EIF2AK4	440275	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40308848	40308848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	40308848	T	C	40308848	3	2	521	1	0	0	0	0	1	0	0	0	5001	1821	63	3	4015	3	EIF2AK4	15	40308848	Missense_Mutation	SNP	T	TCGA-CJ-4923-01A-01D-1429-08		40308848	62222544	34	30245											
IGDCC3	9543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65624284	65624284	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	65624284	G	A	65624284	2	1	521	1	0	0	0	0	0	0	0	1	7575	1368	48	2		2	IGDCC3	15	65624284	Silent	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	25315436	65624284	36907108	35	30246											
IL16	3603	broad.mit.edu;ucsc.edu	37	15	81591913	81591913	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	81591913	A	A	81591913	3	1	521	1	0	0	0	0	1	0	0	0	7640	1232	43	2	2296	2	IL16	15	81591913	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	15967629	81591913	20939479	36	30247											
BLM	641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91292871	91292871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	91292871	A	C	91292871	3	2	521	1	0	0	0	0	1	0	0	0	1445	159	6	5	379	5	BLM	15	91292871	Missense_Mutation	SNP	A	TCGA-CJ-4923-01A-01D-1429-08	9700958	91292871	11238521	37	30248											
COG8	84342	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69368915	69368915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	69368915	T	C	69368915	3	2	521	1	0	0	0	0	1	0	0	0	3666	1696	59	3	928	3	COG8	16	69368915	Missense_Mutation	SNP	T	TCGA-CJ-4923-01A-01D-1429-08		69368915	20985838	38	30249											
PRPF8	10594	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1579248	1579248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	1579248	G	A	1579248	3	1	521	1	0	0	0	0	1	0	0	0	12585	1000	35	2	4458	2	PRPF8	17	1579248	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08		1579248	79615962	39	30250											
EVI2B	2124	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29632303	29632303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	T	29632303	G	T	29632303	3	4	521	1	0	0	0	0	1	0	0	0	5290	1261	44	4	1025	4	EVI2B	17	29632303	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	28053055	29632303	51562907	40	30251											
ABCA8	10351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	66883567	66883567	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	66883567	G	C	66883567	2	2	521	1	0	0	0	0	0	0	0	1	38	1219	43	4		4	ABCA8	17	66883567	Silent	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	37251264	66883567	14311643	41	30252											
PNPLA6	10908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7615512	7615512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	7615512	G	A	7615512	3	1	521	1	0	0	0	0	1	0	0	0	12176	1058	37	1	2149	1	PNPLA6	19	7615512	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08		7615512	51513471	42	30253											
ZSWIM4	65249	broad.mit.edu;hgsc.bcm.edu	37	19	13910687	13910687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	13910687	G	A	13910687	3	1	521	1	0	0	0	0	1	0	0	0	18255	1116	39	1	313	1	ZSWIM4	19	13910687	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	6295175	13910687	45218296	43	30254											
CPAMD8	27151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17039855	17039855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	T	17039855	G	T	17039855	3	4	521	1	0	0	0	0	1	0	0	0	3797	1261	44	4	2692	4	CPAMD8	19	17039855	Missense_Mutation	SNP	G	TCGA-CJ-4923-01A-01D-1429-08	3129168	17039855	42089128	44	30255											
GFRA4	64096	broad.mit.edu	37	20	3641432	3641432	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	-	3641432	-	-	3641432	7	5	521	1	0	1	0	1	0	0	0	0	6357	1116	39	0	364	0	GFRA4	20	3641432	Frame_Shift_Del	DEL	G	TCGA-CJ-4923-01A-01D-1429-08		3641432	59384088	45	30256											
MACROD2	140733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	15412069	15412069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	15412069	C	A	15412069	3	1	521	1	0	0	0	0	1	0	0	0	9153	478	17	4	586	4	MACROD2	20	15412069	Missense_Mutation	SNP	C	TCGA-CJ-4923-01A-01D-1429-08	11770637	15412069	47613451	46	30257											
LPIN3	64900	broad.mit.edu;ucsc.edu	37	20	39984632	39984632	+	Silent	SNP	T	C	C	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	C	39984632	C	C	39984632	2	2	521	1	0	0	0	0	0	0	0	1	8927	1538	54	3		3	LPIN3	20	39984632	Silent	SNP	T	TCGA-CJ-4923-01A-01D-1429-08	24572563	39984632	23040888	47	30258											
TOP3B	8940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	22317229	22317229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	T	22317229	C	T	22317229	3	4	521	1	0	0	0	0	1	0	0	0	16380	913	32	2	1375	2	TOP3B	22	22317229	Missense_Mutation	SNP	C	TCGA-CJ-4923-01A-01D-1429-08		22317229	28987337	48	30259											
ARSD	414	hgsc.bcm.edu	37	X	2835964	2835964	+	Silent	SNP	G	G	A	rs73632972	bycluster;byfrequency;by1000genomes	TCGA-CJ-4923-01A-01D-1429-08	TCGA-CJ-4923-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	19171a1a-6483-4bf3-b0b4-8cd441303c55	f394a92b-22c4-43d1-991b-b32a270d1cba	A	2835964	G	A	2835964	2	1	521	1	0	0	0	0	0	0	0	1	989	1049	37	1		1	ARSD	23	2835964	Silent	SNP	G	TCGA-CJ-4923-01A-01D-1429-08		2835964	152434596	49	30260											
POMGNT1	55624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	46662429	46662429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	46662429	C	A	46662429	3	1	522	1	0	0	0	0	1	0	0	0	12250	565	20	4	1730	4	POMGNT1	1	46662429	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10		46662429	202588192	1	30261											
ALDH9A1	223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	165652237	165652237	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	165652237	G	T	165652237	2	4	522	1	0	0	0	0	0	0	0	1	506	958	34	4		4	ALDH9A1	1	165652237	Silent	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	118989808	165652237	83598384	2	30262											
NMNAT2	23057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183230359	183230359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	183230359	G	T	183230359	3	4	522	1	0	0	0	0	1	0	0	0	10506	1174	41	4	204	4	NMNAT2	1	183230359	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	17578122	183230359	66020262	3	30263											
ZNF678	339500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	227842449	227842449	+	Silent	SNP	A	A	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	227842449	A	T	227842449	2	4	522	1	0	0	0	0	0	0	0	1	18097	146	6	5		5	ZNF678	1	227842449	Silent	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	44612090	227842449	21408172	4	30264											
CAD	790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27465207	27465207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	G	27465207	C	G	27465207	3	3	522	1	0	0	0	0	1	0	0	0	2567	797	28	4	6292	4	CAD	2	27465207	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10		27465207	215734166	5	30265											
GALM	130589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	38956797	38956797	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	38956797	A	T	38956797	3	4	522	1	0	0	0	0	1	0	0	0	6212	101	4	5	752	5	GALM	2	38956797	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	11491590	38956797	204242576	6	30266											
ACCN4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220402025	220402025	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	220402025	C	A	220402025	2	1	522	1	0	0	0	0	0	0	0	1	131	845	30	4		4	ACCN4	2	220402025	Silent	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	181445228	220402025	22797348	7	30267											
C2orf57	165100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	232457795	232457795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	232457795	G	A	232457795	3	1	522	1	0	0	0	0	1	0	0	0	2180	1290	45	2	135	2	C2orf57	2	232457795	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	12055770	232457795	10741578	8	30268											
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238233432	238233432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	238233432	A	T	238233432	3	4	522	1	0	0	0	0	1	0	0	0	3703	156	6	5	18	5	COL6A3	2	238233432	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	5775637	238233432	4965941	9	30269											
PER2	8864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	239180147	239180147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	G	239180147	A	G	239180147	3	3	522	1	0	0	0	0	1	0	0	0	11737	14	1	3	3261	3	PER2	2	239180147	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	946715	239180147	4019226	10	30270											
THAP4	51078	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	242545863	242545863	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	242545863	C	A	242545863	2	1	522	1	0	0	0	0	0	0	0	1	15858	581	21	4		4	THAP4	2	242545863	Silent	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	3365716	242545863	653510	11	30271											
NKTR	4820	hgsc.bcm.edu;ucsc.edu	37	3	42678973	42678974	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	42678974	-	A	42678973	7	5	522	1	0	1	1	0	0	0	0	0	10455	1291	45	0	1823	0	NKTR	3	42678973	Frame_Shift_Ins	INS	-	TCGA-CJ-5671-01A-11D-1534-10		42678973	155343457	12	30272											
SETD2	29072	broad.mit.edu;ucsc.edu	37	3	47144868	47144868	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	47144868	A	A	47144868	3	1	522	1	0	0	0	0	1	0	0	0	14144	1290	45	2	2869	2	SETD2	3	47144868	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	4465895	47144868	150877562	13	30273											
MYNN	55892	hgsc.bcm.edu;ucsc.edu	37	3	169496863	169496863	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	-	169496863	G	-	169496863	7	5	522	1	0	1	0	1	0	0	0	0	10068	1000	35	0	580	0	MYNN	3	169496863	Frame_Shift_Del	DEL	G	TCGA-CJ-5671-01A-11D-1534-10	122351995	169496863	28525567	14	30274											
VCAN	1462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	82836753	82836753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	82836753	C	T	82836753	3	4	522	1	0	0	0	0	1	0	0	0	17150	797	28	2	7957	2	VCAN	5	82836753	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10		82836753	98078507	15	30275											
FBN2	2201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	127637113	127637113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	127637113	C	T	127637113	3	4	522	1	0	0	0	0	1	0	0	0	5710	893	31	1	2807	1	FBN2	5	127637113	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	44800360	127637113	53278147	16	30276											
FSTL4	23105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	132939626	132939626	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	132939626	G	A	132939626	2	1	522	1	0	0	0	0	0	0	0	1	6086	991	35	2		2	FSTL4	5	132939626	Silent	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	5302513	132939626	47975634	17	30277											
DNAH8	1769	broad.mit.edu	37	6	38758105	38758105	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	38758105	A	A	38758105	4	1	522	1	0	0	0	0	0	1	0	0	4609	1357	47	2	2116	2	DNAH8	6	38758105	Nonsense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10		38758105	132356962	18	30278											
TJAP1	93643	broad.mit.edu;ucsc.edu	37	6	43469319	43469319	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	43469319	A	A	43469319	3	1	522	1	0	0	0	0	1	0	0	0	15940	536	19	4	194	4	TJAP1	6	43469319	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	4711214	43469319	127645748	19	30279											
CASP8AP2	9994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90572531	90572531	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	G	90572531	T	G	90572531	3	3	522	1	0	0	0	0	1	0	0	0	2680	1725	60	5	1125	5	CASP8AP2	6	90572531	Missense_Mutation	SNP	T	TCGA-CJ-5671-01A-11D-1534-10	47103212	90572531	80542536	20	30280	367	2									
CASP8AP2	9994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90572532	90572532	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	90572532	T	C	90572532	2	2	522	1	0	0	0	0	0	0	0	1	2680	1799	63	3		3	CASP8AP2	6	90572532	Silent	SNP	T	TCGA-CJ-5671-01A-11D-1534-10	1	90572532	80542535	21	30281	367	2									
RTN4IP1	84816	broad.mit.edu;ucsc.edu	37	6	107067108	107067108	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	107067108	A	A	107067108	3	1	522	1	0	0	0	0	1	0	0	0	13742	594	21	4	625	4	RTN4IP1	6	107067108	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	16494576	107067108	64047959	22	30282											
KIF25	3834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	168443302	168443302	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	168443302	G	A	168443302	2	1	522	1	0	0	0	0	0	0	0	1	8300	1103	39	1		1	KIF25	6	168443302	Silent	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	61376194	168443302	2671765	23	30283											
NUPL2	11097	hgsc.bcm.edu	37	7	23221811	23221811	+	Missense_Mutation	SNP	A	A	G	rs145987368	byfrequency	TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	G	23221811	A	G	23221811	3	3	522	1	0	0	0	0	1	0	0	0	10782	188	7	3	109	3	NUPL2	7	23221811	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10		23221811	135916852	24	30284											
PVRIG	79037	broad.mit.edu	37	7	99818579	99818579	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	99818579	C	C	99818579	3	2	522	1	0	0	0	0	1	0	0	0	12851	1609	56	3	704	3	PVRIG	7	99818579	Missense_Mutation	SNP	T	TCGA-CJ-5671-01A-11D-1534-10	76596768	99818579	59320084	25	30285											
FIS1	51024	broad.mit.edu	37	7	100883107	100883107	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	100883107	T	T	100883107	3	4	522	1	0	0	0	0	1	0	0	0	5904	478	17	2	23	2	FIS1	7	100883107	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	1064528	100883107	58255556	26	30286											
ARHGEF35	445328	broad.mit.edu	37	7	143884368	143884368	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	143884368	A	A	143884368	3	1	522	1	0	0	0	0	1	0	0	0	905	1348	47	2	349	2	ARHGEF35	7	143884368	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	43001261	143884368	15254295	27	30287											
PXDNL	137902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	52361653	52361653	+	Silent	SNP	G	G	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	52361653	G	C	52361653	2	2	522	1	0	0	0	0	0	0	0	1	12861	1335	47	4		4	PXDNL	8	52361653	Silent	SNP	G	TCGA-CJ-5671-01A-11D-1534-10		52361653	94002369	28	30288											
ZNF707	286075	broad.mit.edu;ucsc.edu	37	8	144776493	144776493	+	Silent	SNP	C	T	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	144776493	T	T	144776493	2	4	522	1	0	0	0	0	0	0	0	1	18123	813	29	2		2	ZNF707	8	144776493	Silent	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	92414840	144776493	1587529	29	30289											
SVIL	6840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	29752498	29752498	+	Missense_Mutation	SNP	T	T	C	rs150671744	byfrequency;alternate_allele	TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	29752498	T	C	29752498	3	2	522	1	0	0	0	0	1	0	0	0	15433	1609	56	3	460	3	SVIL	10	29752498	Missense_Mutation	SNP	T	TCGA-CJ-5671-01A-11D-1534-10		29752498	105782249	30	30290											
PBLD	64081	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70056040	70056040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	70056040	A	C	70056040	3	2	522	1	0	0	0	0	1	0	0	0	11496	159	6	5	717	5	PBLD	10	70056040	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	40303542	70056040	65478707	31	30291											
ARHGAP19	84986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99006064	99006064	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	99006064	A	T	99006064	3	4	522	1	0	0	0	0	1	0	0	0	869	98	4	5	550	5	ARHGAP19	10	99006064	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	28950024	99006064	36528683	32	30292											
DOCK1	1793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	129160369	129160369	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	129160369	A	T	129160369	3	4	522	1	0	0	0	0	1	0	0	0	4686	101	4	5	3392	5	DOCK1	10	129160369	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	30154305	129160369	6374378	33	30293											
CTR9	9646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	10789686	10789686	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	G	10789686	T	G	10789686	3	3	522	1	0	0	0	0	1	0	0	0	4026	1432	50	5	1996	5	CTR9	11	10789686	Missense_Mutation	SNP	T	TCGA-CJ-5671-01A-11D-1534-10		10789686	124216830	34	30294											
OR8U8	504189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56143438	56143438	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	56143438	G	C	56143438	3	2	522	1	0	0	0	0	1	0	0	0	11254	1310	46	4		4	OR8U8	11	56143438	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	45353752	56143438	78863078	35	30295	368	2									
OR8U8	504189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56143439	56143439	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	56143439	C	T	56143439	2	4	522	1	0	0	0	0	0	0	0	1	11254	796	28	2		2	OR8U8	11	56143439	Silent	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	1	56143439	78863077	36	30296	368	2									
PC	5091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66616396	66616396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	66616396	C	T	66616396	3	4	522	1	0	0	0	0	1	0	0	0	11504	826	29	2	29	2	PC	11	66616396	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	10472957	66616396	68390120	37	30297											
ALG8	79053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	77817939	77817939	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	77817939	T	C	77817939	2	2	522	1	0	0	0	0	0	0	0	1	523	1422	50	3		3	ALG8	11	77817939	Silent	SNP	T	TCGA-CJ-5671-01A-11D-1534-10	11201543	77817939	57188577	38	30298											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	103091360	103091360	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	103091360	C	A	103091360	2	1	522	1	0	0	0	0	0	0	0	1	4848	813	29	4		4	DYNC2H1	11	103091360	Silent	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	25273421	103091360	31915156	39	30299											
RAD52	5893	hgsc.bcm.edu;ucsc.edu	37	12	1034639	1034639	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	-	1034639	A	-	1034639	7	5	522	1	0	1	0	1	0	0	0	0	13004	333	12	0	760	0	RAD52	12	1034639	Frame_Shift_Del	DEL	A	TCGA-CJ-5671-01A-11D-1534-10		1034639	132817256	40	30300											
ITFG2	55846	hgsc.bcm.edu;ucsc.edu	37	12	2929366	2929366	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	-	2929366	T	-	2929366	7	5	522	1	0	1	0	1	0	0	0	0	7877	1551	54	0	539	0	ITFG2	12	2929366	Frame_Shift_Del	DEL	T	TCGA-CJ-5671-01A-11D-1534-10	1894727	2929366	130922529	41	30301											
PTPN6	5777	broad.mit.edu	37	12	7069507	7069507	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	7069507	C	C	7069507	3	2	522	1	0	0	0	0	1	0	0	0	12805	1681	58	3	1654	3	PTPN6	12	7069507	Missense_Mutation	SNP	T	TCGA-CJ-5671-01A-11D-1534-10	4140141	7069507	126782388	42	30302											
LRIG3	121227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	59276667	59276667	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	59276667	T	C	59276667	2	2	522	1	0	0	0	0	0	0	0	1	8953	1567	55	3		3	LRIG3	12	59276667	Silent	SNP	T	TCGA-CJ-5671-01A-11D-1534-10	52207160	59276667	74575228	43	30303											
E2F7	144455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	77444477	77444477	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	77444477	C	T	77444477	2	4	522	1	0	0	0	0	0	0	0	1	4874	738	26	2		2	E2F7	12	77444477	Silent	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	18167810	77444477	56407418	44	30304											
SELPLG	6404	hgsc.bcm.edu	37	12	109017651	109017680	+	Frame_Shift_Del	DEL	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT	-	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	-	109017680	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT	-	109017651	7	5	522	1	0	1	0	1	0	0	0	0	14033	1174	41	0	809	0	SELPLG	12	109017651	Frame_Shift_Del	DEL	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT	TCGA-CJ-5671-01A-11D-1534-10	31573174	109017651	24834244	45	30305											
GIT2	9815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	110421492	110421492	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	110421492	T	A	110421492	3	1	522	1	0	0	0	0	1	0	0	0	6404	1464	51	5	1968	5	GIT2	12	110421492	Missense_Mutation	SNP	T	TCGA-CJ-5671-01A-11D-1534-10	1403841	110421492	23430403	46	30306											
FRY	10129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32721987	32721987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	32721987	C	A	32721987	3	1	522	1	0	0	0	0	1	0	0	0	6070	507	18	4	1345	4	FRY	13	32721987	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10		32721987	82447891	47	30307											
ESD	2098	broad.mit.edu;hgsc.bcm.edu	37	13	47345584	47345584	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	47345584	G	A	47345584	2	1	522	1	0	0	0	0	0	0	0	1	5252	1368	48	2		2	ESD	13	47345584	Silent	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	14623597	47345584	67824294	48	30308											
SDCCAG1	0	broad.mit.edu;ucsc.edu	37	14	50298067	50298067	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	50298067	C	C	50298067	3	2	522	1	0	0	0	0	1	0	0	0	13970	101	4	5	2427	5	SDCCAG1	14	50298067	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10		50298067	57051473	49	30309											
SOS2	6655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	50597307	50597307	+	Silent	SNP	T	T	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	50597307	T	A	50597307	2	1	522	1	0	0	0	0	0	0	0	1	14950	1799	63	5		5	SOS2	14	50597307	Silent	SNP	T	TCGA-CJ-5671-01A-11D-1534-10	299240	50597307	56752233	50	30310											
TXNDC16	57544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	52922174	52922174	+	Silent	SNP	G	G	C	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	C	52922174	G	C	52922174	2	2	522	1	0	0	0	0	0	0	0	1	16807	1335	47	4		4	TXNDC16	14	52922174	Silent	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	2324867	52922174	54427366	51	30311											
TMEM63C	57156	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	77723017	77723017	+	Missense_Mutation	SNP	C	C	T	rs185516701	by1000genomes	TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	77723017	C	T	77723017	3	4	522	1	0	0	0	0	1	0	0	0	16204	893	31	1	2455	1	TMEM63C	14	77723017	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	24800843	77723017	29626523	52	30312											
ZNF770	54989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	35275034	35275034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	35275034	G	A	35275034	3	1	522	1	0	0	0	0	1	0	0	0	18155	1029	36	2	1477	2	ZNF770	15	35275034	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10		35275034	67256358	53	30313											
PRTG	283659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	55965850	55965850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	55965850	C	T	55965850	3	4	522	1	0	0	0	0	1	0	0	0	12648	565	20	2	1925	2	PRTG	15	55965850	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	20690816	55965850	46565542	54	30314											
IGF1R	3480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	99192822	99192822	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	99192822	C	T	99192822	2	4	522	1	0	0	0	0	0	0	0	1	7578	784	28	2		2	IGF1R	15	99192822	Silent	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	43226972	99192822	3338570	55	30315											
KCNG4	93107	broad.mit.edu	37	16	84270394	84270394	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	84270394	T	T	84270394	3	4	522	1	0	0	0	0	1	0	0	0	8037	1261	44	4	867	4	KCNG4	16	84270394	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10		84270394	6084359	56	30316											
CLEC10A	10462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	6981408	6981408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	G	6981408	A	G	6981408	3	3	522	1	0	0	0	0	1	0	0	0	3497	188	7	3	895	3	CLEC10A	17	6981408	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10		6981408	74213802	57	30317											
MAP3K14	9020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	43347888	43347888	+	Silent	SNP	A	A	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	43347888	A	T	43347888	2	4	522	1	0	0	0	0	0	0	0	1	9255	188	7	5		5	MAP3K14	17	43347888	Silent	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	36366480	43347888	37847322	58	30318											
CUEDC1	404093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	55948719	55948719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	G	55948719	A	G	55948719	3	3	522	1	0	0	0	0	1	0	0	0	4054	449	16	3	384	3	CUEDC1	17	55948719	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	12600831	55948719	25246491	59	30319											
CTDP1	9150	hgsc.bcm.edu	37	18	77475187	77475188	+	In_Frame_Ins	INS	-	-	GGA	rs35893234	bycluster;by1000genomes	TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	GGA	77475188	-	GGA	77475187	7	5	522	1	0	1	1	0	0	0	0	0	4004	1464	51	0	1757	0	CTDP1	18	77475187	In_Frame_Ins	INS	-	TCGA-CJ-5671-01A-11D-1534-10		77475187	602061	60	30320											
ZNF570	148268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	37967302	37967302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	37967302	G	A	37967302	3	1	522	1	0	0	0	0	1	0	0	0	18014	1348	47	2	232	2	ZNF570	19	37967302	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10		37967302	21161681	61	30321											
GRIK5	2901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42563630	42563630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	42563630	C	A	42563630	3	1	522	1	0	0	0	0	1	0	0	0	6784	912	32	4	2444	4	GRIK5	19	42563630	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10	4596328	42563630	16565353	62	30322											
ZNF175	7728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52090388	52090388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	52090388	G	T	52090388	3	4	522	1	0	0	0	0	1	0	0	0	17757	962	34	4	818	4	ZNF175	19	52090388	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	9526758	52090388	7038595	63	30323											
ITCH	83737	broad.mit.edu;ucsc.edu	37	20	33026360	33026360	+	Silent	SNP	A	G	G	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	G	33026360	G	G	33026360	2	3	522	1	0	0	0	0	0	0	0	1	7875	146	6	3		3	ITCH	20	33026360	Silent	SNP	A	TCGA-CJ-5671-01A-11D-1534-10		33026360	29999160	64	30324											
KRTAP19-2	337969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	31859596	31859596	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	31859596	G	T	31859596	4	4	522	1	0	0	0	0	0	1	0	0	8536	1311	46	4	88	4	KRTAP19-2	21	31859596	Nonsense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10		31859596	16270299	65	30325											
DSCR3	10311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	38610801	38610801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	G	38610801	A	G	38610801	3	3	522	1	0	0	0	0	1	0	0	0	4773	43	2	3	606	3	DSCR3	21	38610801	Missense_Mutation	SNP	A	TCGA-CJ-5671-01A-11D-1534-10	6751205	38610801	9519094	66	30326											
LARGE	9215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	33780246	33780246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	33780246	C	T	33780246	3	4	522	1	0	0	0	0	1	0	0	0	8634	864	30	2	1365	2	LARGE	22	33780246	Missense_Mutation	SNP	C	TCGA-CJ-5671-01A-11D-1534-10		33780246	17524320	67	30327											
MLC1	23209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50518347	50518347	+	Silent	SNP	G	G	A	rs121908343	alternate_allele	TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	50518347	G	A	50518347	2	1	522	1	0	0	0	0	0	0	0	1	9619	1159	40	1		1	MLC1	22	50518347	Silent	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	16738101	50518347	786219	68	30328											
VCX3B	425054	hgsc.bcm.edu	37	X	8434347	8434376	+	In_Frame_Del	DEL	GAACCACTGAGTCAGGAGAGCGAGATGGAA	GAACCACTGAGTCAGGAGAGCGAGATGGAA	-	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	GAACCACTGAGTCAGGAGAGCGAGATGGAA	GAACCACTGAGTCAGGAGAGCGAGATGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	-	8434376	GAACCACTGAGTCAGGAGAGCGAGATGGAA	-	8434347	7	5	522	1	0	1	0	1	0	0	0	0	17157	1175	41	0	584	0	VCX3B	23	8434347	In_Frame_Del	DEL	GAACCACTGAGTCAGGAGAGCGAGATGGAA	TCGA-CJ-5671-01A-11D-1534-10		8434347	146836213	69	30329											
KLHL4	56062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	86921522	86921522	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	T	86921522	G	T	86921522	2	4	522	1	0	0	0	0	0	0	0	1	8398	1277	45	4		4	KLHL4	23	86921522	Silent	SNP	G	TCGA-CJ-5671-01A-11D-1534-10	78487175	86921522	68349038	70	30330											
ZFY	7544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	Y	2829189	2829189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5671-01A-11D-1534-10	TCGA-CJ-5671-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5b1084bb-3fb2-4f3f-9ca7-7108b0f77994	474c3c87-dc39-4106-850a-8d802a30eb14	A	2829189	G	A	2829189	3	1	522	1	0	0	0	0	1	0	0	0	17674	1377	48	2	142	2	ZFY	24	2829189	Missense_Mutation	SNP	G	TCGA-CJ-5671-01A-11D-1534-10		2829189	56544377	71	30331											
ZMYM1	79830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35579833	35579833	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	35579833	A	C	35579833	3	2	523	1	0	0	0	0	1	0	0	0	17711	72	3	5	2436	5	ZMYM1	1	35579833	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10		35579833	213670788	1	30332											
LRRC7	57554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	70518807	70518807	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	70518807	T	C	70518807	2	2	523	1	0	0	0	0	0	0	0	1	9027	1538	54	3		3	LRRC7	1	70518807	Silent	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	34938974	70518807	178731814	2	30333											
FNDC7	163479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109280146	109280146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	109280146	G	A	109280146	3	1	523	1	0	0	0	0	1	0	0	0	5980	1246	43	2	2212	2	FNDC7	1	109280146	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	38761339	109280146	139970475	3	30334											
GDAP2	54834	broad.mit.edu;ucsc.edu	37	1	118426150	118426150	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	118426150	G	G	118426150	3	3	523	1	0	0	0	0	1	0	0	0	6316	304	11	3	347	3	GDAP2	1	118426150	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	9146004	118426150	130824471	4	30335											
VSIG8	391123	hgsc.bcm.edu;ucsc.edu	37	1	159828569	159828572	+	Frame_Shift_Del	DEL	CTCG	CTCG	-	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	CTCG	CTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	-	159828572	CTCG	-	159828569	7	5	523	1	0	1	0	1	0	0	0	0	17238	564	20	0	1085	0	VSIG8	1	159828569	Frame_Shift_Del	DEL	CTCG	TCGA-CJ-5672-01A-11D-1534-10	41402419	159828569	89422052	5	30336											
CFH	3075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	196684863	196684863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	196684863	G	A	196684863	3	1	523	1	0	0	0	0	1	0	0	0	3285	1348	47	2	1720	2	CFH	1	196684863	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	36856294	196684863	52565758	6	30337											
LYST	1130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	235969775	235969775	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	235969775	C	T	235969775	2	4	523	1	0	0	0	0	0	0	0	1	9135	912	32	2		2	LYST	1	235969775	Silent	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	39284912	235969775	13280846	7	30338											
GTF3C2	2976	broad.mit.edu;ucsc.edu	37	2	27565792	27565792	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	27565792	A	A	27565792	3	1	523	1	0	0	0	0	1	0	0	0	6880	1294	45	2	2333	2	GTF3C2	2	27565792	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10		27565792	215633581	8	30339											
RAB1A	5861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	65316108	65316108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	65316108	T	C	65316108	3	2	523	1	0	0	0	0	1	0	0	0	12918	1667	58	3	240	3	RAB1A	2	65316108	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	37750316	65316108	177883265	9	30340											
GKN2	200504	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	69177365	69177365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	69177365	C	A	69177365	3	1	523	1	0	0	0	0	1	0	0	0	6432	594	21	4	473	4	GKN2	2	69177365	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	3861257	69177365	174022008	10	30341											
RAB11FIP5	26056	broad.mit.edu	37	2	73315745	73315745	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	73315745	A	A	73315745	3	1	523	1	0	0	0	0	1	0	0	0	12910	942	33	2	972	2	RAB11FIP5	2	73315745	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	4138380	73315745	169883628	11	30342											
NAT8	9027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	73868603	73868603	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	73868603	G	A	73868603	2	1	523	1	0	0	0	0	0	0	0	1	10186	1045	37	1		1	NAT8	2	73868603	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	552858	73868603	169330770	12	30343											
CNNM4	26504	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	97427956	97427956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	97427956	G	A	97427956	3	1	523	1	0	0	0	0	1	0	0	0	3617	1087	38	1	1222	1	CNNM4	2	97427956	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	23559353	97427956	145771417	13	30344											
ERMN	57471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	158182140	158182140	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	158182140	C	T	158182140	2	4	523	1	0	0	0	0	0	0	0	1	5237	639	23	1		1	ERMN	2	158182140	Silent	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	60754184	158182140	85017233	14	30345											
TANC1	85461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160080760	160080760	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	160080760	G	A	160080760	2	1	523	1	0	0	0	0	0	0	0	1	15556	933	33	2		2	TANC1	2	160080760	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	1898620	160080760	83118613	15	30346											
HECW2	57520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	197184391	197184391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	197184391	G	A	197184391	3	1	523	1	0	0	0	0	1	0	0	0	7050	1000	35	2	3579	2	HECW2	2	197184391	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	37103631	197184391	46014982	16	30347											
SF3B1	23451	broad.mit.edu;ucsc.edu	37	2	198257832	198257832	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	198257832	A	A	198257832	3	1	523	1	0	0	0	0	1	0	0	0	14162	1059	37	1	302	1	SF3B1	2	198257832	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	1073441	198257832	44941541	17	30348											
SATB2	23314	broad.mit.edu;ucsc.edu	37	2	200245089	200245089	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	200245089	A	A	200245089	4	1	523	1	0	0	0	0	0	1	0	0	13867	1357	47	2	1634	2	SATB2	2	200245089	Nonsense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	1987257	200245089	42954284	18	30349											
NRP2	8828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	206580920	206580920	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	206580920	T	C	206580920	2	2	523	1	0	0	0	0	0	0	0	1	10668	1471	51	3		3	NRP2	2	206580920	Silent	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	6335831	206580920	36618453	19	30350											
STK36	27148	broad.mit.edu	37	2	219557312	219557312	+	Missense_Mutation	SNP	C	T	T	rs145717046		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	219557312	T	T	219557312	3	4	523	1	0	0	0	0	1	0	0	0	15314	652	23	1	1980	1	STK36	2	219557312	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	12976392	219557312	23642061	20	30351											
CCDC108	255101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219888914	219888914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	219888914	C	A	219888914	3	1	523	1	0	0	0	0	1	0	0	0	2745	796	28	4	3443	4	CCDC108	2	219888914	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	331602	219888914	23310459	21	30352											
ZFAND2B	130617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220072990	220072990	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	220072990	C	A	220072990	2	1	523	1	0	0	0	0	0	0	0	1	17640	903	32	4		4	ZFAND2B	2	220072990	Silent	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	184076	220072990	23126383	22	30353											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10191648	10191648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	10191648	G	T	10191648	3	4	523	1	0	0	0	0	1	0	0	0	17174	1285	45	4	651	4	VHL	3	10191648	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10		10191648	187830782	23	30354											
RARB	5915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	25636158	25636158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	25636158	T	C	25636158	3	2	523	1	0	0	0	0	1	0	0	0	13066	1435	50	3	1165	3	RARB	3	25636158	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	15444510	25636158	172386272	24	30355											
PDHB	5162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	58416621	58416621	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	58416621	G	A	58416621	4	1	523	1	0	0	0	0	0	1	0	0	11673	1328	46	2	747	2	PDHB	3	58416621	Nonsense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	32780463	58416621	139605809	25	30356											
COX17	10063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	119393997	119393997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	119393997	C	A	119393997	3	1	523	1	0	0	0	0	1	0	0	0	3768	837	29	4	4	4	COX17	3	119393997	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	60977376	119393997	78628433	26	30357											
COL6A5	256076	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130174477	130174477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	130174477	C	A	130174477	3	1	523	1	0	0	0	0	1	0	0	0	3704	827	29	4	6899	4	COL6A5	3	130174477	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	10780480	130174477	67847953	27	30358											
KCNAB1	7881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	156175241	156175241	+	Splice_Site	SNP	G	G	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	156175241	G	T	156175241	5	4	523	1	0	0	0	0	0	0	1	0	8016	1014	35	4	842	4	KCNAB1	3	156175241	Splice_Site	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	26000764	156175241	41847189	28	30359											
MECOM	2122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	168833688	168833688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	168833688	C	A	168833688	3	1	523	1	0	0	0	0	1	0	0	0	9429	478	17	4	1787	4	MECOM	3	168833688	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	12658447	168833688	29188742	29	30360											
FRAS1	80144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	79308552	79308552	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	79308552	A	T	79308552	3	4	523	1	0	0	0	0	1	0	0	0	6049	69	3	5	3786	5	FRAS1	4	79308552	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10		79308552	111845724	30	30361											
BBS12	166379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	123664977	123664977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	123664977	A	C	123664977	3	2	523	1	0	0	0	0	1	0	0	0	1337	14	1	5	1932	5	BBS12	4	123664977	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	44356425	123664977	67489299	31	30362											
SORBS2	8470	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	186548090	186548090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	186548090	C	T	186548090	3	4	523	1	0	0	0	0	1	0	0	0	14941	565	20	2	2524	2	SORBS2	4	186548090	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	62883113	186548090	4606186	32	30363											
CTNNA1	1495	broad.mit.edu;ucsc.edu	37	5	138261073	138261073	+	Silent	SNP	A	C	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	138261073	C	C	138261073	2	2	523	1	0	0	0	0	0	0	0	1	4014	179	7	5		5	CTNNA1	5	138261073	Silent	SNP	A	TCGA-CJ-5672-01A-11D-1534-10		138261073	42654187	33	30364											
PCDHB3	56132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140481311	140481311	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	140481311	T	G	140481311	3	3	523	1	0	0	0	0	1	0	0	0	11550	1551	54	5	1080	5	PCDHB3	5	140481311	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	2220238	140481311	40433949	34	30365											
SLC36A2	153201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150701632	150701632	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	150701632	A	G	150701632	2	3	523	1	0	0	0	0	0	0	0	1	14607	242	9	3		3	SLC36A2	5	150701632	Silent	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	10220321	150701632	30213628	35	30366											
ZNF354B	117608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	178309752	178309752	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	178309752	A	T	178309752	3	4	523	1	0	0	0	0	1	0	0	0	17877	188	7	5	313	5	ZNF354B	5	178309752	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	27608120	178309752	2605508	36	30367											
TXNDC5	81567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7883469	7883469	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	7883469	G	A	7883469	4	1	523	1	0	0	0	0	0	1	0	0	16811	1124	39	1	95	1	TXNDC5	6	7883469	Nonsense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10		7883469	163231598	37	30368											
VARS	7407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	31752061	31752061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	31752061	G	A	31752061	3	1	523	1	0	0	0	0	1	0	0	0	17135	1319	46	2	2265	2	VARS	6	31752061	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	23868592	31752061	139363006	38	30369											
HS3ST5	222537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	114383925	114383925	+	Missense_Mutation	SNP	C	C	T	rs144143119	byfrequency	TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	114383925	C	T	114383925	3	4	523	1	0	0	0	0	1	0	0	0	7375	768	27	1	963	1	HS3ST5	6	114383925	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	82631864	114383925	56731142	39	30370											
EYA4	2070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	133844277	133844277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	133844277	C	T	133844277	3	4	523	1	0	0	0	0	1	0	0	0	5333	797	28	2	1766	2	EYA4	6	133844277	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	19460352	133844277	37270790	40	30371											
MAP3K5	4217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	136923035	136923035	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	136923035	G	C	136923035	3	2	523	1	0	0	0	0	1	0	0	0	9260	1348	47	4	1406	4	MAP3K5	6	136923035	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	3078758	136923035	34192032	41	30372											
SP4	6671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	21469813	21469813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	21469813	A	G	21469813	3	3	523	1	0	0	0	0	1	0	0	0	14979	391	14	3	1040	3	SP4	7	21469813	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10		21469813	137668850	42	30373											
OGDH	4967	broad.mit.edu;ucsc.edu	37	7	44664056	44664056	+	Silent	SNP	G	T	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	44664056	T	T	44664056	2	4	523	1	0	0	0	0	0	0	0	1	10846	1248	44	4		4	OGDH	7	44664056	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	23194243	44664056	114474607	43	30374											
CFTR	1080	broad.mit.edu;hgsc.bcm.edu	37	7	117180383	117180383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	117180383	G	A	117180383	3	1	523	1	0	0	0	0	1	0	0	0	3296	971	34	2	1129	2	CFTR	7	117180383	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	72516327	117180383	41958280	44	30375											
KIAA1429	25962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	95531232	95531232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	95531232	A	G	95531232	3	3	523	1	0	0	0	0	1	0	0	0	8238	420	15	3	3062	3	KIAA1429	8	95531232	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10		95531232	50832790	45	30376											
KIAA1429	25962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	95538745	95538745	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	95538745	T	G	95538745	3	3	523	1	0	0	0	0	1	0	0	0	8238	1609	56	5	3833	5	KIAA1429	8	95538745	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	7513	95538745	50825277	46	30377											
DMRTA1	63951	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	22451073	22451073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	22451073	G	T	22451073	3	4	523	1	0	0	0	0	1	0	0	0	4590	933	33	4	684	4	DMRTA1	9	22451073	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10		22451073	118762358	47	30378											
SEMA4D	10507	broad.mit.edu	37	9	91994191	91994191	+	Silent	SNP	A	G	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	91994191	G	G	91994191	2	3	523	1	0	0	0	0	0	0	0	1	14047	40	2	3		3	SEMA4D	9	91994191	Silent	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	69543118	91994191	49219240	48	30379											
SVEP1	79987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	113312161	113312161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	113312161	A	G	113312161	3	3	523	1	0	0	0	0	1	0	0	0	15432	14	1	3	10148	3	SVEP1	9	113312161	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	21317970	113312161	27901270	49	30380											
GSN	2934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	124072995	124072995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	124072995	G	A	124072995	3	1	523	1	0	0	0	0	1	0	0	0	6832	1261	44	2	580	2	GSN	9	124072995	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	10760834	124072995	17140436	50	30381											
ITIH5	80760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	7682816	7682816	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	7682816	A	C	7682816	3	2	523	1	0	0	0	0	1	0	0	0	7914	72	3	5	2707	5	ITIH5	10	7682816	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10		7682816	127851931	51	30382											
KCNA4	3739	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	30034211	30034211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	30034211	C	A	30034211	3	1	523	1	0	0	0	0	1	0	0	0	8012	594	21	4	1950	4	KCNA4	11	30034211	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10		30034211	104972305	52	30383											
OR4C3	256144	broad.mit.edu;hgsc.bcm.edu	37	11	48346714	48346714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	48346714	C	G	48346714	3	3	523	1	0	0	0	0	1	0	0	0	11057	816	29	4	224	4	OR4C3	11	48346714	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	18312503	48346714	86659802	53	30384											
OR8J3	81168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55904652	55904652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	55904652	A	C	55904652	3	2	523	1	0	0	0	0	1	0	0	0	11249	126	5	5	406	5	OR8J3	11	55904652	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	7557938	55904652	79101864	54	30385											
BSCL2	26580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62472858	62472858	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	62472858	A	T	62472858	3	4	523	1	0	0	0	0	1	0	0	0	1529	188	7	5	1109	5	BSCL2	11	62472858	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	6568206	62472858	72533658	55	30386											
SPTBN2	6712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66483388	66483388	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	66483388	G	A	66483388	2	1	523	1	0	0	0	0	0	0	0	1	15132	1277	45	2		2	SPTBN2	11	66483388	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	4010530	66483388	68523128	56	30387											
RNF121	55298	broad.mit.edu;ucsc.edu	37	11	71707272	71707272	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	71707272	A	A	71707272	3	1	523	1	0	0	0	0	1	0	0	0	13444	564	20	4	929	4	RNF121	11	71707272	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	5223884	71707272	63299244	57	30388											
VPS11	55823	broad.mit.edu;ucsc.edu	37	11	118938631	118938631	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	118938631	G	G	118938631	3	3	523	1	0	0	0	0	1	0	0	0	17200	507	18	4	99	4	VPS11	11	118938631	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	47231359	118938631	16067885	58	30389											
OR10S1	219873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123847986	123847986	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	123847986	A	T	123847986	3	4	523	1	0	0	0	0	1	0	0	0	10925	188	7	5	586	5	OR10S1	11	123847986	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	4909355	123847986	11158530	59	30390											
KLRC2	3822	broad.mit.edu;hgsc.bcm.edu	37	12	10584769	10584770	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	AA	10584770	-	AA	10584769	7	5	523	1	0	1	1	0	0	0	0	0	8423	594	21	0	183	0	KLRC2	12	10584769	Frame_Shift_Ins	INS	-	TCGA-CJ-5672-01A-11D-1534-10		10584769	123267126	60	30391											
TM7SF3	51768	broad.mit.edu;ucsc.edu	37	12	27156169	27156169	+	Silent	SNP	C	T	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	27156169	T	T	27156169	2	4	523	1	0	0	0	0	0	0	0	1	15987	666	23	1		1	TM7SF3	12	27156169	Silent	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	16571400	27156169	106695726	61	30392											
C12orf10	60314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53700059	53700059	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	53700059	G	A	53700059	2	1	523	1	0	0	0	0	0	0	0	1	1676	1306	46	2		2	C12orf10	12	53700059	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	26543890	53700059	80151836	62	30393											
SCYL2	55681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100732421	100732421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	100732421	T	C	100732421	3	2	523	1	0	0	0	0	1	0	0	0	13961	1493	52	3	2327	3	SCYL2	12	100732421	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	47032362	100732421	33119474	63	30394											
MED13L	23389	broad.mit.edu;ucsc.edu	37	12	116429263	116429263	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	116429263	A	A	116429263	3	1	523	1	0	0	0	0	1	0	0	0	9438	710	25	4	3196	4	MED13L	12	116429263	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	15696842	116429263	17422632	64	30395											
FLT1	2321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	28913320	28913320	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	28913320	C	A	28913320	4	1	523	1	0	0	0	0	0	1	0	0	5948	864	30	4	1599	4	FLT1	13	28913320	Nonsense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10		28913320	86256558	65	30396											
YLPM1	56252	hgsc.bcm.edu;ucsc.edu	37	14	75287773	75287773	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	-	75287773	A	-	75287773	7	5	523	1	0	1	0	1	0	0	0	0	17498	333	12	0	6110	0	YLPM1	14	75287773	Frame_Shift_Del	DEL	A	TCGA-CJ-5672-01A-11D-1534-10		75287773	32061767	66	30397											
DENND4A	10260	broad.mit.edu;ucsc.edu	37	15	66023980	66023980	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	66023980	T	T	66023980	3	4	523	1	0	0	0	0	1	0	0	0	4435	695	24	2	4654	2	DENND4A	15	66023980	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10		66023980	36507412	67	30398											
IL16	3603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	81552201	81552201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	81552201	G	T	81552201	3	4	523	1	0	0	0	0	1	0	0	0	7640	1000	35	4	407	4	IL16	15	81552201	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	15528221	81552201	20979191	68	30399											
C16orf62	57020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	19613023	19613023	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	19613023	G	T	19613023	2	4	523	1	0	0	0	0	0	0	0	1	1827	1335	47	4		4	C16orf62	16	19613023	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10		19613023	70741730	69	30400											
GPT2	84706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	46958369	46958369	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	46958369	C	T	46958369	2	4	523	1	0	0	0	0	0	0	0	1	6745	842	30	2		2	GPT2	16	46958369	Silent	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	27345346	46958369	43396384	70	30401											
ADAMTS18	170692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	77353974	77353974	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	77353974	G	A	77353974	2	1	523	1	0	0	0	0	0	0	0	1	263	1161	41	2		2	ADAMTS18	16	77353974	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	30395605	77353974	13000779	71	30402											
TMEM102	284114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7340067	7340067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	7340067	G	A	7340067	3	1	523	1	0	0	0	0	1	0	0	0	16029	971	34	2	775	2	TMEM102	17	7340067	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10		7340067	73855143	72	30403											
DNAH2	146754	broad.mit.edu;hgsc.bcm.edu	37	17	7722587	7722587	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	7722587	T	A	7722587	3	1	523	1	0	0	0	0	1	0	0	0	4604	1580	55	5	11158	5	DNAH2	17	7722587	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	382520	7722587	73472623	73	30404											
RNF43	54894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56435542	56435542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	56435542	G	A	56435542	3	1	523	1	0	0	0	0	1	0	0	0	13508	1174	41	2	764	2	RNF43	17	56435542	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	48712955	56435542	24759668	74	30405											
ZNF57	126295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2917051	2917051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	2917051	G	C	2917051	3	2	523	1	0	0	0	0	1	0	0	0	18013	1020	36	4	446	4	ZNF57	19	2917051	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10		2917051	56211932	75	30406											
ACER1	125981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6309756	6309756	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	6309756	T	A	6309756	3	1	523	1	0	0	0	0	1	0	0	0	138	1725	60	5	366	5	ACER1	19	6309756	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	3392705	6309756	52819227	76	30407											
MCOLN1	57192	hgsc.bcm.edu;ucsc.edu	37	19	7589957	7589957	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	-	7589957	T	-	7589957	7	5	523	1	0	1	0	1	0	0	0	0	9402	1609	56	0	148	0	MCOLN1	19	7589957	Frame_Shift_Del	DEL	T	TCGA-CJ-5672-01A-11D-1534-10	1280201	7589957	51539026	77	30408											
COL5A3	50509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10084433	10084433	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	10084433	T	A	10084433	3	1	523	1	0	0	0	0	1	0	0	0	3700	1623	56	5	1702	5	COL5A3	19	10084433	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	2494476	10084433	49044550	78	30409											
SIN3B	23309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	16977286	16977286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	16977286	G	T	16977286	3	4	523	1	0	0	0	0	1	0	0	0	14339	991	35	4	1871	4	SIN3B	19	16977286	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	6892853	16977286	42151697	79	30410											
ZNF780B	163131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40540306	40540306	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	40540306	G	A	40540306	2	1	523	1	0	0	0	0	0	0	0	1	18165	1280	45	2		2	ZNF780B	19	40540306	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	23563020	40540306	18588677	80	30411											
BCL2L12	83596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50169188	50169188	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	50169188	G	T	50169188	2	4	523	1	0	0	0	0	0	0	0	1	1370	1074	38	4		4	BCL2L12	19	50169188	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	9628882	50169188	8959795	81	30412											
U2AF2	11338	hgsc.bcm.edu;ucsc.edu	37	19	56185308	56185310	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	-	56185310	GGA	-	56185308	7	5	523	1	0	1	0	1	0	0	0	0	16835	1335	47	0	1348	0	U2AF2	19	56185308	In_Frame_Del	DEL	GGA	TCGA-CJ-5672-01A-11D-1534-10	6016120	56185308	2943675	82	30413											
NLRP13	126204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56443398	56443398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	56443398	G	T	56443398	3	4	523	1	0	0	0	0	1	0	0	0	10482	933	33	4	2893	4	NLRP13	19	56443398	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	258090	56443398	2685585	83	30414											
ESF1	51575	broad.mit.edu;ucsc.edu	37	20	13750637	13750637	+	Silent	SNP	A	G	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	13750637	G	G	13750637	2	3	523	1	0	0	0	0	0	0	0	1	5253	214	8	3		3	ESF1	20	13750637	Silent	SNP	A	TCGA-CJ-5672-01A-11D-1534-10		13750637	49274883	84	30415											
CDK5RAP1	51654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31958402	31958402	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	31958402	A	T	31958402	3	4	523	1	0	0	0	0	1	0	0	0	3147	14	1	5	484	5	CDK5RAP1	20	31958402	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	18207765	31958402	31067118	85	30416											
PHF20	51230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34459576	34459576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	34459576	G	T	34459576	3	4	523	1	0	0	0	0	1	0	0	0	11838	1020	36	4	1137	4	PHF20	20	34459576	Missense_Mutation	SNP	G	TCGA-CJ-5672-01A-11D-1534-10	2501174	34459576	28565944	86	30417											
PCNT	5116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	47850087	47850087	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	47850087	G	A	47850087	2	1	523	1	0	0	0	0	0	0	0	1	11597	933	33	2		2	PCNT	21	47850087	Silent	SNP	G	TCGA-CJ-5672-01A-11D-1534-10		47850087	279808	87	30418											
APOO	79135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	23874429	23874429	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	23874429	T	A	23874429	3	1	523	1	0	0	0	0	1	0	0	0	813	1725	60	5	53	5	APOO	23	23874429	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10		23874429	131396131	88	30419											
TAF1	6872	broad.mit.edu;hgsc.bcm.edu	37	X	70603945	70603945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	G	70603945	A	G	70603945	3	3	523	1	0	0	0	0	1	0	0	0	15525	188	7	3	2191	3	TAF1	23	70603945	Missense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10	46729516	70603945	84666615	89	30420											
RNF128	79589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	105970595	105970595	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	-	105970595	C	-	105970595	7	5	523	1	0	1	0	1	0	0	0	0	13449	507	18	0	864	0	RNF128	23	105970595	Frame_Shift_Del	DEL	C	TCGA-CJ-5672-01A-11D-1534-10	35366650	105970595	49299965	90	30421											
MAGEA11	4110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	148797543	148797543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	A	148797543	C	A	148797543	3	1	523	1	0	0	0	0	1	0	0	0	9172	680	24	4	424	4	MAGEA11	23	148797543	Missense_Mutation	SNP	C	TCGA-CJ-5672-01A-11D-1534-10	42826948	148797543	6473017	91	30422											
HAUS7	55559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	152721103	152721103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	C	152721103	T	C	152721103	3	2	523	1	0	0	0	0	1	0	0	0	6978	1638	57	3	261	3	HAUS7	23	152721103	Missense_Mutation	SNP	T	TCGA-CJ-5672-01A-11D-1534-10	3923560	152721103	2549457	92	30423											
USP9Y	8287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	Y	14850172	14850172	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5672-01A-11D-1534-10	TCGA-CJ-5672-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	61497c42-78f2-43d4-b2ab-2b1e655271a8	495879a9-ed52-43a8-99ea-37ca7008c323	T	14850172	A	T	14850172	4	4	523	1	0	0	0	0	0	1	0	0	17103	247	9	5	1280	5	USP9Y	24	14850172	Nonsense_Mutation	SNP	A	TCGA-CJ-5672-01A-11D-1534-10		14850172	44523394	93	30424											
FBXO42	54455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16577186	16577186	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	16577186	G	C	16577186	4	2	524	1	0	0	0	0	0	1	0	0	5758	1024	36	4	24	4	FBXO42	1	16577186	Nonsense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10		16577186	232673435	1	30425											
SDC3	9672	hgsc.bcm.edu;ucsc.edu	37	1	31347255	31347255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	31347255	G	A	31347255	3	1	524	1	0	0	0	0	1	0	0	0	13966	1203	42	2	285	2	SDC3	1	31347255	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	14770069	31347255	217903366	2	30426											
CSMD2	114784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	34238249	34238249	+	Silent	SNP	G	G	A	rs142181378		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	34238249	G	A	34238249	2	1	524	1	0	0	0	0	0	0	0	1	3947	1103	39	1		1	CSMD2	1	34238249	Silent	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	2890994	34238249	215012372	3	30427											
PCSK9	255738	broad.mit.edu;hgsc.bcm.edu	37	1	55529175	55529175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	55529175	G	A	55529175	3	1	524	1	0	0	0	0	1	0	0	0	11613	971	34	2	2043	2	PCSK9	1	55529175	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	21290926	55529175	193721446	4	30428											
CREB3L4	148327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153946103	153946103	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	153946103	T	A	153946103	3	1	524	1	0	0	0	0	1	0	0	0	3861	1609	56	5	935	5	CREB3L4	1	153946103	Missense_Mutation	SNP	T	TCGA-CJ-5675-01A-11D-1534-10	98416928	153946103	95304518	5	30429											
OLFML2B	25903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161953786	161953786	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	161953786	C	G	161953786	3	3	524	1	0	0	0	0	1	0	0	0	10865	680	24	4	324	4	OLFML2B	1	161953786	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	8007683	161953786	87296835	6	30430											
GPR37L1	9283	broad.mit.edu;hgsc.bcm.edu	37	1	202097558	202097558	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	202097558	C	T	202097558	2	4	524	1	0	0	0	0	0	0	0	1	6699	755	27	1		1	GPR37L1	1	202097558	Silent	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	40143772	202097558	47153063	7	30431											
WDR35	57539	broad.mit.edu;ucsc.edu	37	2	20138115	20138115	+	Silent	SNP	C	G	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	20138115	G	G	20138115	2	3	524	1	0	0	0	0	0	0	0	1	17301	494	18	4		4	WDR35	2	20138115	Silent	SNP	C	TCGA-CJ-5675-01A-11D-1534-10		20138115	223061258	8	30432											
SCN3A	6328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	165948825	165948825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	165948825	G	C	165948825	3	2	524	1	0	0	0	0	1	0	0	0	13931	1020	36	4	1264	4	SCN3A	2	165948825	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	145810710	165948825	77250548	9	30433											
SCN9A	6335	hgsc.bcm.edu;ucsc.edu	37	2	167137006	167137006	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	-	167137006	T	-	167137006	7	5	524	1	0	1	0	1	0	0	0	0	13938	1609	56	0	3818	0	SCN9A	2	167137006	Frame_Shift_Del	DEL	T	TCGA-CJ-5675-01A-11D-1534-10	1188181	167137006	76062367	10	30434											
ARL8B	55207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	5215726	5215726	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	5215726	G	C	5215726	3	2	524	1	0	0	0	0	1	0	0	0	947	942	33	4	415	4	ARL8B	3	5215726	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10		5215726	192806704	11	30435											
NKTR	4820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	42680080	42680080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	42680080	G	T	42680080	3	4	524	1	0	0	0	0	1	0	0	0	10455	1232	43	4	2930	4	NKTR	3	42680080	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	37464354	42680080	155342350	12	30436											
PARP9	83666	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	122247559	122247559	+	Silent	SNP	G	G	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	122247559	G	C	122247559	2	2	524	1	0	0	0	0	0	0	0	1	11473	1335	47	4		4	PARP9	3	122247559	Silent	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	79567479	122247559	75774871	13	30437											
PLXNA1	5361	broad.mit.edu	37	3	126733641	126733641	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	126733641	A	A	126733641	4	1	524	1	0	0	0	0	0	1	0	0	12126	518	18	4	2894	4	PLXNA1	3	126733641	Nonsense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	4486082	126733641	71288789	14	30438											
NPHP3	27031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	132409424	132409424	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	132409424	T	G	132409424	3	3	524	1	0	0	0	0	1	0	0	0	10587	1792	62	5	1387	5	NPHP3	3	132409424	Missense_Mutation	SNP	T	TCGA-CJ-5675-01A-11D-1534-10	5675783	132409424	65613006	15	30439											
PRR23A	729627	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	138724479	138724479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	138724479	G	A	138724479	3	1	524	1	0	0	0	0	1	0	0	0	12604	942	33	2	172	2	PRR23A	3	138724479	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	6315055	138724479	59297951	16	30440											
MUC4	4585	hgsc.bcm.edu	37	3	195507215	195507262	+	In_Frame_Del	DEL	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	-	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	-	195507262	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	-	195507215	7	5	524	1	0	1	0	1	0	0	0	0	9985	1174	41	0		0	MUC4	3	195507215	In_Frame_Del	DEL	GAAGAGGGGTGACGTGACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	TCGA-CJ-5675-01A-11D-1534-10	56782736	195507215	2515215	17	30441											
MUC4	4585	hgsc.bcm.edu	37	3	195509031	195509078	+	In_Frame_Del	DEL	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	-	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	-	195509078	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	-	195509031	7	5	524	1	0	1	0	1	0	0	0	0	9985	1335	47	0		0	MUC4	3	195509031	In_Frame_Del	DEL	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	TCGA-CJ-5675-01A-11D-1534-10	1816	195509031	2513399	18	30442											
ZBTB49	166793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	4303969	4303969	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	4303969	C	T	4303969	2	4	524	1	0	0	0	0	0	0	0	1	17562	912	32	2		2	ZBTB49	4	4303969	Silent	SNP	C	TCGA-CJ-5675-01A-11D-1534-10		4303969	186850307	19	30443											
TSPAN5	10098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	99397581	99397581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	99397581	C	T	99397581	3	4	524	1	0	0	0	0	1	0	0	0	16662	826	29	2	211	2	TSPAN5	4	99397581	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	95093612	99397581	91756695	20	30444											
LEF1	51176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	109004590	109004590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	109004590	T	G	109004590	3	3	524	1	0	0	0	0	1	0	0	0	8721	1464	51	5	751	5	LEF1	4	109004590	Missense_Mutation	SNP	T	TCGA-CJ-5675-01A-11D-1534-10	9607009	109004590	82149686	21	30445											
MYO10	4651	broad.mit.edu	37	5	16674991	16674991	+	Silent	SNP	A	G	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	16674991	G	G	16674991	2	3	524	1	0	0	0	0	0	0	0	1	10069	242	9	3		3	MYO10	5	16674991	Silent	SNP	A	TCGA-CJ-5675-01A-11D-1534-10		16674991	164240269	22	30446											
ADAMTS12	81792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33881335	33881335	+	Silent	SNP	G	G	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	33881335	G	C	33881335	2	2	524	1	0	0	0	0	0	0	0	1	257	929	33	4		4	ADAMTS12	5	33881335	Silent	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	17206344	33881335	147033925	23	30447											
C5orf28	64417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	43446548	43446548	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	43446548	A	T	43446548	3	4	524	1	0	0	0	0	1	0	0	0	2291	159	6	5	227	5	C5orf28	5	43446548	Missense_Mutation	SNP	A	TCGA-CJ-5675-01A-11D-1534-10	9565213	43446548	137468712	24	30448											
DHX29	54505	hgsc.bcm.edu;ucsc.edu	37	5	54569200	54569201	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	TA	54569201	-	TA	54569200	7	5	524	1	0	1	1	0	0	0	0	0	4505	1841	64	0	1457	0	DHX29	5	54569200	Frame_Shift_Ins	INS	-	TCGA-CJ-5675-01A-11D-1534-10	11122652	54569200	126346060	25	30449											
MAST4	375449	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66460450	66460450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	66460450	G	A	66460450	3	1	524	1	0	0	0	0	1	0	0	0	9334	1203	42	2	5687	2	MAST4	5	66460450	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	11891250	66460450	114454810	26	30450											
ADAMTS2	9509	broad.mit.edu;hgsc.bcm.edu	37	5	178548695	178548695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	178548695	C	G	178548695	3	3	524	1	0	0	0	0	1	0	0	0	265	855	30	4	498	4	ADAMTS2	5	178548695	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	112088245	178548695	2366565	27	30451											
MDGA1	266727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	37606075	37606075	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	37606075	C	T	37606075	2	4	524	1	0	0	0	0	0	0	0	1	9413	610	22	2		2	MDGA1	6	37606075	Silent	SNP	C	TCGA-CJ-5675-01A-11D-1534-10		37606075	133508992	28	30452											
FAM83B	222584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	54806400	54806400	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	54806400	C	G	54806400	3	3	524	1	0	0	0	0	1	0	0	0	5641	912	32	4	2645	4	FAM83B	6	54806400	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	17200325	54806400	116308667	29	30453											
ALDH8A1	64577	hgsc.bcm.edu;ucsc.edu	37	6	135254009	135254009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	135254009	G	T	135254009	3	4	524	1	0	0	0	0	1	0	0	0	505	991	35	4	721	4	ALDH8A1	6	135254009	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	80447609	135254009	35861058	30	30454											
KCTD7	154881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	66103318	66103318	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	66103318	C	G	66103318	4	3	524	1	0	0	0	0	0	1	0	0	8121	576	20	4	403	4	KCTD7	7	66103318	Nonsense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10		66103318	93035345	31	30455											
PPP1R9A	55607	hgsc.bcm.edu;ucsc.edu	37	7	94919499	94919499	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	-	94919499	A	-	94919499	7	5	524	1	0	1	0	1	0	0	0	0	12388	247	9	0	4111	0	PPP1R9A	7	94919499	Frame_Shift_Del	DEL	A	TCGA-CJ-5675-01A-11D-1534-10	28816181	94919499	64219164	32	30456											
MOSPD3	64598	broad.mit.edu;hgsc.bcm.edu	37	7	100211260	100211260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	100211260	C	T	100211260	3	4	524	1	0	0	0	0	1	0	0	0	9724	739	26	2	452	2	MOSPD3	7	100211260	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	5291761	100211260	58927403	33	30457											
ATP6V0A4	50617	broad.mit.edu;ucsc.edu	37	7	138417832	138417832	+	Silent	SNP	G	A	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	138417832	A	A	138417832	2	1	524	1	0	0	0	0	0	0	0	1	1170	1281	45	2		2	ATP6V0A4	7	138417832	Silent	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	38206572	138417832	20720831	34	30458											
NCOA2	10499	hgsc.bcm.edu;ucsc.edu	37	8	71068322	71068322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	71068322	G	T	71068322	3	4	524	1	0	0	0	0	1	0	0	0	10236	1261	44	4	2168	4	NCOA2	8	71068322	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10		71068322	75295700	35	30459											
ADCY8	114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	131916170	131916170	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	131916170	T	G	131916170	3	3	524	1	0	0	0	0	1	0	0	0	300	1493	52	5	2044	5	ADCY8	8	131916170	Missense_Mutation	SNP	T	TCGA-CJ-5675-01A-11D-1534-10	60847848	131916170	14447852	36	30460											
KCNQ3	3786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	133141908	133141908	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	133141908	C	T	133141908	2	4	524	1	0	0	0	0	0	0	0	1	8091	523	19	1		1	KCNQ3	8	133141908	Silent	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	1225738	133141908	13222114	37	30461											
PLEC	5339	broad.mit.edu	37	8	144995868	144995868	+	Silent	SNP	A	G	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	144995868	G	G	144995868	2	3	524	1	0	0	0	0	0	0	0	1	12059	214	8	3		3	PLEC	8	144995868	Silent	SNP	A	TCGA-CJ-5675-01A-11D-1534-10	11853960	144995868	1368154	38	30462											
SARDH	1757	broad.mit.edu	37	9	136577831	136577831	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	136577831	G	G	136577831	3	3	524	1	0	0	0	0	1	0	0	0	13854	869	30	4	1566	4	SARDH	9	136577831	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10		136577831	4635600	39	30463											
NDST2	8509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75567375	75567375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	75567375	G	A	75567375	3	1	524	1	0	0	0	0	1	0	0	0	10263	1058	37	1	1931	1	NDST2	10	75567375	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10		75567375	59967372	40	30464											
RNLS	55328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	90122392	90122392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	90122392	A	G	90122392	3	3	524	1	0	0	0	0	1	0	0	0	13518	101	4	3	499	3	RNLS	10	90122392	Missense_Mutation	SNP	A	TCGA-CJ-5675-01A-11D-1534-10	14555017	90122392	45412355	41	30465											
MADD	8567	hgsc.bcm.edu;ucsc.edu	37	11	47299728	47299730	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	CCA	CCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	-	47299730	CCA	-	47299728	7	5	524	1	0	1	0	1	0	0	0	0	9159	855	30	0	1126	0	MADD	11	47299728	In_Frame_Del	DEL	CCA	TCGA-CJ-5675-01A-11D-1534-10		47299728	87706788	42	30466											
CARNS1	57571	broad.mit.edu	37	11	67191044	67191044	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	67191044	A	A	67191044	3	1	524	1	0	0	0	0	1	0	0	0	2658	595	21	4	1859	4	CARNS1	11	67191044	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	19891316	67191044	67815472	43	30467											
CCDC81	60494	broad.mit.edu;ucsc.edu	37	11	86097136	86097136	+	Silent	SNP	G	T	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	86097136	T	T	86097136	2	4	524	1	0	0	0	0	0	0	0	1	2857	1190	42	4		4	CCDC81	11	86097136	Silent	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	18906092	86097136	48909380	44	30468	369	2									
CCDC81	60494	broad.mit.edu;ucsc.edu	37	11	86097137	86097137	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	86097137	T	T	86097137	4	4	524	1	0	0	0	0	0	1	0	0	2857	711	25	2	130	2	CCDC81	11	86097137	Nonsense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	1	86097137	48909379	45	30469	369	2									
KBTBD6	89890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	41706026	41706026	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	41706026	A	C	41706026	3	2	524	1	0	0	0	0	1	0	0	0	8004	246	9	5	1406	5	KBTBD6	13	41706026	Missense_Mutation	SNP	A	TCGA-CJ-5675-01A-11D-1534-10		41706026	73463852	46	30470											
DIS3	22894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	73336063	73336063	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	73336063	T	G	73336063	3	3	524	1	0	0	0	0	1	0	0	0	4537	1780	62	5	556	5	DIS3	13	73336063	Missense_Mutation	SNP	T	TCGA-CJ-5675-01A-11D-1534-10	31630037	73336063	41833815	47	30471											
TJP1	7082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	30064288	30064288	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	30064288	T	G	30064288	3	3	524	1	0	0	0	0	1	0	0	0	15941	1838	64	5	5055	5	TJP1	15	30064288	Missense_Mutation	SNP	T	TCGA-CJ-5675-01A-11D-1534-10		30064288	72467104	48	30472											
SRRM2	23524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2809006	2809006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	2809006	C	T	2809006	3	4	524	1	0	0	0	0	1	0	0	0	15181	681	24	2	632	2	SRRM2	16	2809006	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10		2809006	87545747	49	30473											
CDH11	1009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	64981780	64981780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	64981780	G	A	64981780	3	1	524	1	0	0	0	0	1	0	0	0	3099	1000	35	2	277	2	CDH11	16	64981780	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	62172774	64981780	25372973	50	30474											
ZFHX3	463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	72993014	72993014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	72993014	T	A	72993014	3	1	524	1	0	0	0	0	1	0	0	0	17646	1725	60	5	10116	5	ZFHX3	16	72993014	Missense_Mutation	SNP	T	TCGA-CJ-5675-01A-11D-1534-10	8011234	72993014	17361739	51	30475											
NT5M	56953	broad.mit.edu	37	17	17250185	17250185	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	17250185	C	C	17250185	3	2	524	1	0	0	0	0	1	0	0	0	10701	1580	55	3	629	3	NT5M	17	17250185	Missense_Mutation	SNP	T	TCGA-CJ-5675-01A-11D-1534-10		17250185	63945025	52	30476											
TLCD1	116238	broad.mit.edu;hgsc.bcm.edu	37	17	27052361	27052361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	G	27052361	C	G	27052361	3	3	524	1	0	0	0	0	1	0	0	0	15949	912	32	4	430	4	TLCD1	17	27052361	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	9802176	27052361	54142849	53	30477											
LHX1	3975	hgsc.bcm.edu;ucsc.edu	37	17	35295520	35295520	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	-	35295520	G	-	35295520	7	5	524	1	0	1	0	1	0	0	0	0	8777	1000	35	0	28	0	LHX1	17	35295520	Frame_Shift_Del	DEL	G	TCGA-CJ-5675-01A-11D-1534-10	8243159	35295520	45899690	54	30478											
NMT1	4836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	43173564	43173564	+	Silent	SNP	A	A	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	43173564	A	C	43173564	2	2	524	1	0	0	0	0	0	0	0	1	10510	349	13	5		5	NMT1	17	43173564	Silent	SNP	A	TCGA-CJ-5675-01A-11D-1534-10	7878044	43173564	38021646	55	30479											
FBF1	85302	hgsc.bcm.edu;ucsc.edu	37	17	73927360	73927360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	73927360	C	A	73927360	3	1	524	1	0	0	0	0	1	0	0	0	5702	623	22	4	3365	4	FBF1	17	73927360	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	30753796	73927360	7267850	56	30480											
CABLES1	91768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	20814600	20814600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	20814600	T	C	20814600	3	2	524	1	0	0	0	0	1	0	0	0	2531	1435	50	3	1189	3	CABLES1	18	20814600	Missense_Mutation	SNP	T	TCGA-CJ-5675-01A-11D-1534-10		20814600	57262648	57	30481											
ZNF407	55628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	72346773	72346773	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	72346773	T	C	72346773	2	2	524	1	0	0	0	0	0	0	0	1	17899	1799	63	3		3	ZNF407	18	72346773	Silent	SNP	T	TCGA-CJ-5675-01A-11D-1534-10	51532173	72346773	5730475	58	30482											
ZNF763	284390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12089265	12089265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	12089265	G	A	12089265	3	1	524	1	0	0	0	0	1	0	0	0	18149	943	33	2	549	2	ZNF763	19	12089265	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10		12089265	47039718	59	30483											
CC2D1A	54862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14034594	14034594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	14034594	G	A	14034594	3	1	524	1	0	0	0	0	1	0	0	0	2728	1087	38	1	1976	1	CC2D1A	19	14034594	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	1945329	14034594	45094389	60	30484											
FCGBP	8857	broad.mit.edu;hgsc.bcm.edu	37	19	40376809	40376809	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	40376809	C	T	40376809	2	4	524	1	0	0	0	0	0	0	0	1	5785	726	26	2		2	FCGBP	19	40376809	Silent	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	26342215	40376809	18752174	61	30485											
LILRA6	79168	broad.mit.edu	37	19	54744735	54744735	+	Silent	SNP	G	A	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	54744735	A	A	54744735	2	1	524	1	0	0	0	0	0	0	0	1	8796	1335	47	2		2	LILRA6	19	54744735	Silent	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	14367926	54744735	4384248	62	30486											
ZNF814	730051	broad.mit.edu;hgsc.bcm.edu	37	19	58386268	58386268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	58386268	G	T	58386268	3	4	524	1	0	0	0	0	1	0	0	0	18188	1319	46	4	2081	4	ZNF814	19	58386268	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	3641533	58386268	742715	63	30487											
ANGPT4	51378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	896633	896633	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	896633	G	A	896633	2	1	524	1	0	0	0	0	0	0	0	1	612	1252	44	2		2	ANGPT4	20	896633	Silent	SNP	G	TCGA-CJ-5675-01A-11D-1534-10		896633	62128887	64	30488											
C20orf194	25943	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3278767	3278767	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	C	3278767	G	C	3278767	3	2	524	1	0	0	0	0	1	0	0	0	2101	1000	35	4	1759	4	C20orf194	20	3278767	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	2382134	3278767	59746753	65	30489											
GGTLC1	92086	broad.mit.edu;hgsc.bcm.edu	37	20	23966339	23966339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	23966339	G	A	23966339	3	1	524	1	0	0	0	0	1	0	0	0	6372	1203	42	2	189	2	GGTLC1	20	23966339	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	20687572	23966339	39059181	66	30490											
SNX21	90203	broad.mit.edu	37	20	44463023	44463037	+	In_Frame_Del	DEL	GACGAGGACGACGAG	-	-	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	GACGAGGACGACGAG	GACGAGGACGACGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	-	44463037	-	-	44463023	7	5	524	1	0	1	0	1	0	0	0	0	14906	1058	37	0	211	0	SNX21	20	44463023	In_Frame_Del	DEL	GACGAGGACGACGAG	TCGA-CJ-5675-01A-11D-1534-10	20496684	44463023	18562497	67	30491											
NCOA5	57727	broad.mit.edu;hgsc.bcm.edu	37	20	44692013	44692013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	44692013	G	A	44692013	3	1	524	1	0	0	0	0	1	0	0	0	10239	1261	44	2	611	2	NCOA5	20	44692013	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	228990	44692013	18333507	68	30492											
ADAMTS5	11096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	28337626	28337626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	28337626	G	A	28337626	3	1	524	1	0	0	0	0	1	0	0	0	269	971	34	2	1739	2	ADAMTS5	21	28337626	Missense_Mutation	SNP	G	TCGA-CJ-5675-01A-11D-1534-10		28337626	19792269	69	30493											
PPP2R3B	28227	hgsc.bcm.edu;ucsc.edu	37	X	322172	322172	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	-	322172	C	-	322172	7	5	524	1	0	1	0	1	0	0	0	0	12399	739	26	0	1297	0	PPP2R3B	23	322172	Frame_Shift_Del	DEL	C	TCGA-CJ-5675-01A-11D-1534-10		322172	154948388	70	30494											
RAI2	10742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	17819773	17819773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	T	17819773	C	T	17819773	3	4	524	1	0	0	0	0	1	0	0	0	13022	536	19	1	1238	1	RAI2	23	17819773	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11D-1534-10	17497601	17819773	137450787	71	30495											
ITIH5L	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	54785277	54785277	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5675-01A-11D-1534-10	TCGA-CJ-5675-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	78b7e188-9252-48b6-9e10-04eb8690b879	bfa15fdf-d1f5-4e0c-986f-c888e0cf77da	A	54785277	G	A	54785277	2	1	524	1	0	0	0	0	0	0	0	1	7915	1164	41	2		2	ITIH5L	23	54785277	Silent	SNP	G	TCGA-CJ-5675-01A-11D-1534-10	36965504	54785277	100485283	72	30496											
VHL	7428	hgsc.bcm.edu	37	3	10183864	10183864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5675-01A-11W-1584-10	TCGA-CJ-5675-11A-01W-1585-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	6b33ad1e-6eed-4a96-b8e3-360f12c58ea7	c5a65315-0c2c-46a1-b8b9-ea114ce12fec	A	10183864	C	A	10183864	3	1	525	1	0	0	0	0	1	0	0	0	17174	796	28	4	335	4	VHL	3	10183864	Missense_Mutation	SNP	C	TCGA-CJ-5675-01A-11W-1584-10		10183864	187838566	1	30497											
CLCN6	1185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11894362	11894362	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	11894362	G	T	11894362	2	4	526	1	0	0	0	0	0	0	0	1	3469	1219	43	4		4	CLCN6	1	11894362	Silent	SNP	G	TCGA-CJ-5676-01A-11D-1534-10		11894362	237356259	1	30498											
C1orf94	84970	broad.mit.edu;ucsc.edu	37	1	34677961	34677961	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	34677961	G	G	34677961	3	3	526	1	0	0	0	0	1	0	0	0	2073	680	24	4	1697	4	C1orf94	1	34677961	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	22783599	34677961	214572660	2	30499											
FAF1	11124	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	50956260	50956260	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	50956260	C	T	50956260	2	4	526	1	0	0	0	0	0	0	0	1	5373	695	24	2		2	FAF1	1	50956260	Silent	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	16278299	50956260	198294361	3	30500											
SLC44A3	126969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	95360437	95360437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	95360437	A	G	95360437	3	3	526	1	0	0	0	0	1	0	0	0	14650	63	3	3	1979	3	SLC44A3	1	95360437	Missense_Mutation	SNP	A	TCGA-CJ-5676-01A-11D-1534-10	44404177	95360437	153890184	4	30501											
AMY2B	280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	104116348	104116348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	104116348	G	A	104116348	3	1	526	1	0	0	0	0	1	0	0	0	595	1261	44	2	546	2	AMY2B	1	104116348	Missense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	8755911	104116348	145134273	5	30502											
SLC16A1	6566	hgsc.bcm.edu;ucsc.edu	37	1	113460278	113460279	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	113460279	-	T	113460278	7	5	526	1	0	1	1	0	0	0	0	0	14415	330	12	0	760	0	SLC16A1	1	113460278	Frame_Shift_Ins	INS	-	TCGA-CJ-5676-01A-11D-1534-10	9343930	113460278	135790343	6	30503											
HMGCS2	3158	broad.mit.edu;ucsc.edu	37	1	120307055	120307055	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	120307055	A	A	120307055	3	1	526	1	0	0	0	0	1	0	0	0	7240	1551	54	5	1259	5	HMGCS2	1	120307055	Missense_Mutation	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	6846777	120307055	128943566	7	30504											
FCGR3B	2215	broad.mit.edu;hgsc.bcm.edu	37	1	161599827	161599827	+	Splice_Site	SNP	T	T	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	161599827	T	G	161599827	5	3	526	1	0	0	0	0	0	0	1	0	5792	1594	55	5	653	5	FCGR3B	1	161599827	Splice_Site	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	41292772	161599827	87650794	8	30505											
RCSD1	92241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	167663406	167663406	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	167663406	T	A	167663406	3	1	526	1	0	0	0	0	1	0	0	0	13198	1464	51	5	359	5	RCSD1	1	167663406	Missense_Mutation	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	6063579	167663406	81587215	9	30506											
TPR	7175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186310211	186310211	+	Silent	SNP	T	T	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	186310211	T	G	186310211	2	3	526	1	0	0	0	0	0	0	0	1	16428	1567	55	5		5	TPR	1	186310211	Silent	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	18646805	186310211	62940410	10	30507											
GREB1	9687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11706655	11706655	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	11706655	G	A	11706655	2	1	526	1	0	0	0	0	0	0	0	1	6767	962	34	2		2	GREB1	2	11706655	Silent	SNP	G	TCGA-CJ-5676-01A-11D-1534-10		11706655	231492718	11	30508											
SDC1	6382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	20403727	20403727	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	20403727	C	T	20403727	2	4	526	1	0	0	0	0	0	0	0	1	13964	796	28	2		2	SDC1	2	20403727	Silent	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	8697072	20403727	222795646	12	30509											
UGGT1	56886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128928844	128928844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	128928844	C	A	128928844	3	1	526	1	0	0	0	0	1	0	0	0	16953	477	17	4	3200	4	UGGT1	2	128928844	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	108525117	128928844	114270529	13	30510											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191488	10191488	+	Nonsense_Mutation	SNP	C	C	T	rs5030818	bycluster	TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	10191488	C	T	10191488	4	4	526	1	0	0	0	0	0	1	0	0	17174	760	27	1	491	1	VHL	3	10191488	Nonsense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10		10191488	187830942	14	30511											
ULK4	54986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	41504634	41504634	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	41504634	C	G	41504634	3	3	526	1	0	0	0	0	1	0	0	0	16990	826	29	4	510	4	ULK4	3	41504634	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	31313146	41504634	156517796	15	30512											
SETD2	29072	broad.mit.edu;ucsc.edu	37	3	47127736	47127736	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	47127736	T	T	47127736	4	4	526	1	0	0	0	0	0	1	0	0	14144	856	30	2	2392	2	SETD2	3	47127736	Nonsense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	5623102	47127736	150894694	16	30513											
CCDC72	0	hgsc.bcm.edu	37	3	48485282	48485282	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	-	48485282	A	-	48485282	7	5	526	1	0	1	0	1	0	0	0	0	2847	131	5	0	201	0	CCDC72	3	48485282	Frame_Shift_Del	DEL	A	TCGA-CJ-5676-01A-11D-1534-10	1357546	48485282	149537148	17	30514											
PBRM1	55193	broad.mit.edu;ucsc.edu	37	3	52597493	52597493	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	52597493	A	A	52597493	4	1	526	1	0	0	0	0	0	1	0	0	11498	1299	45	2	1036	2	PBRM1	3	52597493	Nonsense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	4112211	52597493	145424937	18	30515											
TNIK	23043	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	170802027	170802027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	170802027	T	A	170802027	3	1	526	1	0	0	0	0	1	0	0	0	16325	1725	60	5	1028	5	TNIK	3	170802027	Missense_Mutation	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	118204534	170802027	27220403	19	30516											
LPHN3	23284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	62800598	62800598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	62800598	C	A	62800598	3	1	526	1	0	0	0	0	1	0	0	0	8924	797	28	4	1991	4	LPHN3	4	62800598	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10		62800598	128353678	20	30517											
WDFY3	23001	hgsc.bcm.edu;ucsc.edu	37	4	85611661	85611662	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	85611662	-	T	85611661	7	5	526	1	0	1	1	0	0	0	0	0	17282	1386	48	0	1251	0	WDFY3	4	85611661	Frame_Shift_Ins	INS	-	TCGA-CJ-5676-01A-11D-1534-10	22811063	85611661	105542615	21	30518											
CLGN	1047	broad.mit.edu;hgsc.bcm.edu	37	4	141321553	141321553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	141321553	T	C	141321553	3	2	526	1	0	0	0	0	1	0	0	0	3526	1763	61	3	1216	3	CLGN	4	141321553	Missense_Mutation	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	55709892	141321553	49832723	22	30519											
MYO10	4651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	16818168	16818168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	16818168	C	T	16818168	3	4	526	1	0	0	0	0	1	0	0	0	10069	652	23	1	6103	1	MYO10	5	16818168	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10		16818168	164097092	23	30520											
ADAMTS12	81792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33588814	33588814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	33588814	G	T	33588814	3	4	526	1	0	0	0	0	1	0	0	0	257	1328	46	4	2057	4	ADAMTS12	5	33588814	Missense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	16770646	33588814	147326446	24	30521											
F2RL2	2151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	75914170	75914170	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	75914170	A	C	75914170	3	2	526	1	0	0	0	0	1	0	0	0	5347	246	9	5	766	5	F2RL2	5	75914170	Missense_Mutation	SNP	A	TCGA-CJ-5676-01A-11D-1534-10	42325356	75914170	105001090	25	30522											
GPR98	84059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	90074272	90074272	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	90074272	A	C	90074272	3	2	526	1	0	0	0	0	1	0	0	0	6728	14	1	5	12945	5	GPR98	5	90074272	Missense_Mutation	SNP	A	TCGA-CJ-5676-01A-11D-1534-10	14160102	90074272	90840988	26	30523											
SRP19	6728	broad.mit.edu	37	5	112228273	112228273	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	112228273	G	G	112228273	3	3	526	1	0	0	0	0	1	0	0	0	15166	261	9	3		3	SRP19	5	112228273	Missense_Mutation	SNP	A	TCGA-CJ-5676-01A-11D-1534-10	22154001	112228273	68686987	27	30524											
DMXL1	1657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	118502399	118502399	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	118502399	T	G	118502399	3	3	526	1	0	0	0	0	1	0	0	0	4596	1783	62	5	5145	5	DMXL1	5	118502399	Missense_Mutation	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	6274126	118502399	62412861	28	30525											
PAIP2	51247	broad.mit.edu;ucsc.edu	37	5	138699475	138699475	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	138699475	C	C	138699475	3	2	526	1	0	0	0	0	1	0	0	0	11404	1464	51	3	4	3	PAIP2	5	138699475	Missense_Mutation	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	20197076	138699475	42215785	29	30526											
ZNF300	91975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150276423	150276423	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	150276423	T	C	150276423	2	2	526	1	0	0	0	0	0	0	0	1	17843	1606	56	3		3	ZNF300	5	150276423	Silent	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	11576948	150276423	30638837	30	30527			1	60		2	2	31	T		6.589624e-05
ZNF300	91975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150276453	150276453	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	150276453	T	C	150276453	2	2	526	1	0	0	0	0	0	0	0	1	17843	1799	63	3		3	ZNF300	5	150276453	Silent	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	30	150276453	30638807	31	30528			1	60		2	2	31	T		6.589624e-05
GEMIN5	25929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	154270986	154270986	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	154270986	G	A	154270986	2	1	526	1	0	0	0	0	0	0	0	1	6338	929	33	2		2	GEMIN5	5	154270986	Silent	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	3994533	154270986	26644274	32	30529											
ZNF165	7718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28054028	28054028	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	28054028	C	G	28054028	3	3	526	1	0	0	0	0	1	0	0	0	17752	479	17	4	496	4	ZNF165	6	28054028	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10		28054028	143061039	33	30530											
ABCF1	23	broad.mit.edu	37	6	30551602	30551602	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	30551602	C	C	30551602	3	2	526	1	0	0	0	0	1	0	0	0	65	1551	54	3	1083	3	ABCF1	6	30551602	Missense_Mutation	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	2497574	30551602	140563465	34	30531											
XPO5	57510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43528033	43528033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	43528033	C	T	43528033	3	4	526	1	0	0	0	0	1	0	0	0	17459	768	27	1	2599	1	XPO5	6	43528033	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	12976431	43528033	127587034	35	30532											
GPR116	221395	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46826546	46826546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	46826546	C	T	46826546	3	4	526	1	0	0	0	0	1	0	0	0	6640	565	20	2	966	2	GPR116	6	46826546	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	3298513	46826546	124288521	36	30533											
PKHD1	5314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	51612746	51612746	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	51612746	G	T	51612746	4	4	526	1	0	0	0	0	0	1	0	0	11978	1294	45	4	2635	4	PKHD1	6	51612746	Nonsense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	4786200	51612746	119502321	37	30534											
UTRN	7402	broad.mit.edu;ucsc.edu	37	6	144811221	144811221	+	Silent	SNP	G	A	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	144811221	A	A	144811221	2	1	526	1	0	0	0	0	0	0	0	1	17115	933	33	2		2	UTRN	6	144811221	Silent	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	93198475	144811221	26303846	38	30535											
CDK14	5218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	90356089	90356089	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	90356089	A	T	90356089	3	4	526	1	0	0	0	0	1	0	0	0	3132	304	11	5	284	5	CDK14	7	90356089	Missense_Mutation	SNP	A	TCGA-CJ-5676-01A-11D-1534-10		90356089	68782574	39	30536											
JAK2	3717	broad.mit.edu;hgsc.bcm.edu	37	9	5126444	5126444	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	5126444	G	T	5126444	4	4	526	1	0	0	0	0	0	1	0	0	7945	1291	45	4	3375	4	JAK2	9	5126444	Nonsense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10		5126444	136086987	40	30537											
C9orf128	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35826098	35826098	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	35826098	G	C	35826098	3	2	526	1	0	0	0	0	1	0	0	0	2457	1232	43	4	1171	4	C9orf128	9	35826098	Missense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	30699654	35826098	105387333	41	30538											
C9orf114	51490	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131587284	131587284	+	Silent	SNP	A	A	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	131587284	A	T	131587284	2	4	526	1	0	0	0	0	0	0	0	1	2451	175	7	5		5	C9orf114	9	131587284	Silent	SNP	A	TCGA-CJ-5676-01A-11D-1534-10	95761186	131587284	9626147	42	30539											
OGDHL	55753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	50960187	50960187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	50960187	G	A	50960187	3	1	526	1	0	0	0	0	1	0	0	0	10847	1087	38	1	2522	1	OGDHL	10	50960187	Missense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10		50960187	84574560	43	30540											
TRIM34	53840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5655129	5655129	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	5655129	G	C	5655129	3	2	526	1	0	0	0	0	1	0	0	0	16520	1014	35	4	525	4	TRIM34	11	5655129	Missense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10		5655129	129351387	44	30541											
AHNAK	79026	broad.mit.edu;hgsc.bcm.edu	37	11	62290074	62290074	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	62290074	T	A	62290074	4	1	526	1	0	0	0	0	0	1	0	0	414	1821	63	5	5977	5	AHNAK	11	62290074	Nonsense_Mutation	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	56634945	62290074	72716442	45	30542											
YAP1	10413	broad.mit.edu	37	11	101984953	101984953	+	Silent	SNP	T	C	C	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	C	101984953	C	C	101984953	2	2	526	1	0	0	0	0	0	0	0	1	17478	1722	60	3		3	YAP1	11	101984953	Silent	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	39694879	101984953	33021563	46	30543											
EXPH5	23086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108382795	108382795	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	108382795	T	A	108382795	3	1	526	1	0	0	0	0	1	0	0	0	5324	1464	51	5	2534	5	EXPH5	11	108382795	Missense_Mutation	SNP	T	TCGA-CJ-5676-01A-11D-1534-10	6397842	108382795	26623721	47	30544											
C12orf53	0	broad.mit.edu	37	12	6806817	6806817	+	Silent	SNP	C	T	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	6806817	T	T	6806817	2	4	526	1	0	0	0	0	0	0	0	1	1700	639	23	1		1	C12orf53	12	6806817	Silent	SNP	C	TCGA-CJ-5676-01A-11D-1534-10		6806817	127045078	48	30545											
PTPN6	5777	hgsc.bcm.edu;ucsc.edu	37	12	7064112	7064112	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	-	7064112	C	-	7064112	7	5	526	1	0	1	0	1	0	0	0	0	12805	726	26	0	503	0	PTPN6	12	7064112	Frame_Shift_Del	DEL	C	TCGA-CJ-5676-01A-11D-1534-10	257295	7064112	126787783	49	30546											
GLI1	2735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57861144	57861144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	57861144	G	T	57861144	3	4	526	1	0	0	0	0	1	0	0	0	6444	1087	38	4	971	4	GLI1	12	57861144	Missense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	50797032	57861144	75990751	50	30547											
NAV3	89795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	78401106	78401106	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	78401106	C	T	78401106	2	4	526	1	0	0	0	0	0	0	0	1	10192	668	24	2		2	NAV3	12	78401106	Silent	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	20539962	78401106	55450789	51	30548											
PIWIL1	9271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	130839159	130839159	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	130839159	G	T	130839159	2	4	526	1	0	0	0	0	0	0	0	1	11964	1161	41	4		4	PIWIL1	12	130839159	Silent	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	52438053	130839159	3012736	52	30549											
TPP2	7174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	103275383	103275383	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	103275383	C	T	103275383	2	4	526	1	0	0	0	0	0	0	0	1	16424	581	21	2		2	TPP2	13	103275383	Silent	SNP	C	TCGA-CJ-5676-01A-11D-1534-10		103275383	11894495	53	30550											
RTN1	6252	broad.mit.edu	37	14	60194207	60194207	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	-	60194207	-	-	60194207	7	5	526	1	0	1	0	1	0	0	0	0	13738	991	35	0	1228	0	RTN1	14	60194207	Frame_Shift_Del	DEL	G	TCGA-CJ-5676-01A-11D-1534-10		60194207	47155333	54	30551											
INO80	54617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41279359	41279359	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	41279359	G	A	41279359	2	1	526	1	0	0	0	0	0	0	0	1	7753	1281	45	2		2	INO80	15	41279359	Silent	SNP	G	TCGA-CJ-5676-01A-11D-1534-10		41279359	61252033	55	30552											
DAPK2	23604	broad.mit.edu;hgsc.bcm.edu	37	15	64200798	64200798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	64200798	C	A	64200798	3	1	526	1	0	0	0	0	1	0	0	0	4238	695	24	4	82	4	DAPK2	15	64200798	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	22921439	64200798	38330594	56	30553											
ADAD2	161931	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	84229248	84229248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	84229248	G	T	84229248	3	4	526	1	0	0	0	0	1	0	0	0	232	1145	40	4	1269	4	ADAD2	16	84229248	Missense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10		84229248	6125505	57	30554											
RARA	5914	hgsc.bcm.edu	37	17	38510748	38510748	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	38510748	C	T	38510748	2	4	526	1	0	0	0	0	0	0	0	1	13065	813	29	2		2	RARA	17	38510748	Silent	SNP	C	TCGA-CJ-5676-01A-11D-1534-10		38510748	42684462	58	30555											
TBX4	9496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	59557596	59557596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	59557596	C	A	59557596	3	1	526	1	0	0	0	0	1	0	0	0	15672	797	28	4	963	4	TBX4	17	59557596	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	21046848	59557596	21637614	59	30556											
TEX2	55852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62228234	62228234	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	62228234	G	A	62228234	2	1	526	1	0	0	0	0	0	0	0	1	15793	1020	36	2		2	TEX2	17	62228234	Silent	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	2670638	62228234	18966976	60	30557											
ST6GALNAC2	10610	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74563616	74563616	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	74563616	C	G	74563616	3	3	526	1	0	0	0	0	1	0	0	0	15236	825	29	4	256	4	ST6GALNAC2	17	74563616	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	12335382	74563616	6631594	61	30558											
DEFB129	140881	broad.mit.edu;ucsc.edu	37	20	207960	207960	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	207960	T	T	207960	3	4	526	1	0	0	0	0	1	0	0	0	4417	681	24	2	33	2	DEFB129	20	207960	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10		207960	62817560	62	30559											
TH1L	51497	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	57561823	57561823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	57561823	G	A	57561823	3	1	526	1	0	0	0	0	1	0	0	0	15851	1174	41	2	228	2	TH1L	20	57561823	Missense_Mutation	SNP	G	TCGA-CJ-5676-01A-11D-1534-10	57353863	57561823	5463697	63	30560											
POFUT2	23275	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	46689908	46689908	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	46689908	G	A	46689908	2	1	526	1	0	0	0	0	0	0	0	1	12191	1190	42	2		2	POFUT2	21	46689908	Silent	SNP	G	TCGA-CJ-5676-01A-11D-1534-10		46689908	1439987	64	30561											
UPB1	51733	broad.mit.edu;hgsc.bcm.edu	37	22	24906778	24906778	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	G	24906778	A	G	24906778	2	3	526	1	0	0	0	0	0	0	0	1	17014	175	7	3		3	UPB1	22	24906778	Silent	SNP	A	TCGA-CJ-5676-01A-11D-1534-10		24906778	26397788	65	30562											
POLR2F	5435	broad.mit.edu	37	22	38349736	38349736	+	Translation_Start_Site	SNP	C	A	A	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	A	38349736	A	A	38349736	1	1	526	1	0	0	0	0	0	0	0	0	12226	812	28	4		4	POLR2F	22	38349736	Translation_Start_Site	SNP	C	TCGA-CJ-5676-01A-11D-1534-10	13442958	38349736	12954830	66	30563											
KIF4A	24137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	69622483	69622483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	T	69622483	C	T	69622483	3	4	526	1	0	0	0	0	1	0	0	0	8310	536	19	1	2643	1	KIF4A	23	69622483	Missense_Mutation	SNP	C	TCGA-CJ-5676-01A-11D-1534-10		69622483	85648077	67	30564											
APOOL	139322	hgsc.bcm.edu;ucsc.edu	37	X	84342599	84342602	+	Frame_Shift_Del	DEL	CAAC	CAAC	-	novel		TCGA-CJ-5676-01A-11D-1534-10	TCGA-CJ-5676-11A-01D-1534-10	CAAC	CAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8aa293-650b-4661-b130-8b70f0949b86	ae90c0a2-1155-4615-a6f4-effe4dd84861	-	84342602	CAAC	-	84342599	7	5	526	1	0	1	0	1	0	0	0	0	814	710	25	0	756	0	APOOL	23	84342599	Frame_Shift_Del	DEL	CAAC	TCGA-CJ-5676-01A-11D-1534-10	14720116	84342599	70927961	68	30565											
C1orf159	54991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	1021312	1021312	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	1021312	A	C	1021312	3	2	527	1	0	0	0	0	1	0	0	0	2010	72	3	5	221	5	C1orf159	1	1021312	Missense_Mutation	SNP	A	TCGA-CJ-5677-01A-11D-1534-10		1021312	248229309	1	30566											
CROCC	9696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	17264218	17264218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	17264218	A	G	17264218	3	3	527	1	0	0	0	0	1	0	0	0	3895	247	9	3	1314	3	CROCC	1	17264218	Missense_Mutation	SNP	A	TCGA-CJ-5677-01A-11D-1534-10	16242906	17264218	231986403	2	30567											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19447690	19447690	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	19447690	C	T	19447690	2	4	527	1	0	0	0	0	0	0	0	1	16916	912	32	2		2	UBR4	1	19447690	Silent	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	2183472	19447690	229802931	3	30568											
RPL11	6135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24022342	24022342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	24022342	A	T	24022342	3	4	527	1	0	0	0	0	1	0	0	0	13570	217	8	5	469	5	RPL11	1	24022342	Missense_Mutation	SNP	A	TCGA-CJ-5677-01A-11D-1534-10	4574652	24022342	225228279	4	30569											
TRIM62	55223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33612891	33612891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	33612891	A	G	33612891	3	3	527	1	0	0	0	0	1	0	0	0	16549	420	15	3	116	3	TRIM62	1	33612891	Missense_Mutation	SNP	A	TCGA-CJ-5677-01A-11D-1534-10	9590549	33612891	215637730	5	30570											
MCOLN3	55283	hgsc.bcm.edu;ucsc.edu	37	1	85486913	85486913	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	85486913	T	-	85486913	7	5	527	1	0	1	0	1	0	0	0	0	9404	1493	52	0	302	0	MCOLN3	1	85486913	Frame_Shift_Del	DEL	T	TCGA-CJ-5677-01A-11D-1534-10	51874022	85486913	163763708	6	30571											
KCNA2	3737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111146166	111146166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	111146166	G	C	111146166	3	2	527	1	0	0	0	0	1	0	0	0	8010	1281	45	4	264	4	KCNA2	1	111146166	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	25659253	111146166	138104455	7	30572											
ATP8B2	57198	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154313463	154313463	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	154313463	T	G	154313463	3	3	527	1	0	0	0	0	1	0	0	0	1195	1609	56	5	1447	5	ATP8B2	1	154313463	Missense_Mutation	SNP	T	TCGA-CJ-5677-01A-11D-1534-10	43167297	154313463	94937158	8	30573											
PBXIP1	57326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154918597	154918597	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	154918597	T	G	154918597	3	3	527	1	0	0	0	0	1	0	0	0	11503	1609	56	5	650	5	PBXIP1	1	154918597	Missense_Mutation	SNP	T	TCGA-CJ-5677-01A-11D-1534-10	605134	154918597	94332024	9	30574											
HHIPL2	79802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	222717069	222717069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	222717069	C	T	222717069	3	4	527	1	0	0	0	0	1	0	0	0	7101	536	19	1	1422	1	HHIPL2	1	222717069	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	67798472	222717069	26533552	10	30575											
CHRM3	1131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	240070801	240070801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	240070801	G	C	240070801	3	2	527	1	0	0	0	0	1	0	0	0	3380	971	34	4	52	4	CHRM3	1	240070801	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	17353732	240070801	9179820	11	30576											
CEP170	9859	broad.mit.edu	37	1	243328076	243328076	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	243328076	G	G	243328076	3	3	527	1	0	0	0	0	1	0	0	0	3252	796	28	4	1630	4	CEP170	1	243328076	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	3257275	243328076	5922545	12	30577											
OR2L8	391190	broad.mit.edu;hgsc.bcm.edu	37	1	248112511	248112511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	248112511	G	A	248112511	3	1	527	1	0	0	0	0	1	0	0	0	11016	1203	42	2	354	2	OR2L8	1	248112511	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	4784435	248112511	1138110	13	30578											
OR2L13	284521	broad.mit.edu;hgsc.bcm.edu	37	1	248263038	248263038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	248263038	C	T	248263038	3	4	527	1	0	0	0	0	1	0	0	0	11013	652	23	1	363	1	OR2L13	1	248263038	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	150527	248263038	987583	14	30579											
LTBP1	4052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	33534505	33534505	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	33534505	C	T	33534505	2	4	527	1	0	0	0	0	0	0	0	1	9080	816	29	2		2	LTBP1	2	33534505	Silent	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		33534505	209664868	15	30580											
AFF3	3899	hgsc.bcm.edu;ucsc.edu	37	2	100210705	100210705	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	100210705	T	-	100210705	7	5	527	1	0	1	0	1	0	0	0	0	358	1725	60	0	2306	0	AFF3	2	100210705	Frame_Shift_Del	DEL	T	TCGA-CJ-5677-01A-11D-1534-10	66676200	100210705	142988668	16	30581											
WDR33	55339	hgsc.bcm.edu;ucsc.edu	37	2	128480195	128480195	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	128480195	A	-	128480195	7	5	527	1	0	1	0	1	0	0	0	0	17299	224	8	0	2558	0	WDR33	2	128480195	Frame_Shift_Del	DEL	A	TCGA-CJ-5677-01A-11D-1534-10	28269490	128480195	114719178	17	30582											
ALS2CR8	79800	broad.mit.edu;ucsc.edu	37	2	203818776	203818776	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	203818776	G	G	203818776	3	3	527	1	0	0	0	0	1	0	0	0	555	1696	59	5	490	5	ALS2CR8	2	203818776	Missense_Mutation	SNP	T	TCGA-CJ-5677-01A-11D-1534-10	75338581	203818776	39380597	18	30583											
ZFAND2B	130617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220073018	220073018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	220073018	A	G	220073018	3	3	527	1	0	0	0	0	1	0	0	0	17640	72	3	3	493	3	ZFAND2B	2	220073018	Missense_Mutation	SNP	A	TCGA-CJ-5677-01A-11D-1534-10	16254242	220073018	23126355	19	30584											
HJURP	55355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234749785	234749785	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	234749785	A	G	234749785	2	3	527	1	0	0	0	0	0	0	0	1	7196	446	16	3		3	HJURP	2	234749785	Silent	SNP	A	TCGA-CJ-5677-01A-11D-1534-10	14676767	234749785	8449588	20	30585											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191479	10191479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	10191479	C	G	10191479	3	3	527	1	0	0	0	0	1	0	0	0	17174	912	32	4	482	4	VHL	3	10191479	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		10191479	187830951	21	30586											
COL7A1	1294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48626394	48626394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	48626394	C	A	48626394	3	1	527	1	0	0	0	0	1	0	0	0	3706	912	32	4	6889	4	COL7A1	3	48626394	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	38434915	48626394	149396036	22	30587											
KIAA1524	57650	broad.mit.edu;ucsc.edu	37	3	108281998	108281998	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	108281998	A	A	108281998	3	1	527	1	0	0	0	0	1	0	0	0	8246	1174	41	2	1144	2	KIAA1524	3	108281998	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	59655604	108281998	89740432	23	30588											
CDV3	55573	broad.mit.edu;ucsc.edu	37	3	133302927	133302927	+	Silent	SNP	T	C	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	133302927	C	C	133302927	2	2	527	1	0	0	0	0	0	0	0	1	3183	1625	57	3		3	CDV3	3	133302927	Silent	SNP	T	TCGA-CJ-5677-01A-11D-1534-10	25020929	133302927	64719503	24	30589											
RFC1	5981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	39301920	39301920	+	Missense_Mutation	SNP	C	C	T	rs140065280		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	39301920	C	T	39301920	3	4	527	1	0	0	0	0	1	0	0	0	13257	536	19	1	817	1	RFC1	4	39301920	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		39301920	151852356	25	30590											
PRMT10	90826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	148578942	148578942	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	148578942	C	T	148578942	5	4	527	1	0	0	0	0	0	0	1	0	12546	521	18	2	1226	2	PRMT10	4	148578942	Splice_Site	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	109277022	148578942	42575334	26	30591											
TKTL2	84076	hgsc.bcm.edu;ucsc.edu	37	4	164393620	164393620	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	164393620	C	-	164393620	7	5	527	1	0	1	0	1	0	0	0	0	15948	507	18	0	617	0	TKTL2	4	164393620	Frame_Shift_Del	DEL	C	TCGA-CJ-5677-01A-11D-1534-10	15814678	164393620	26760656	27	30592											
PDZD2	23037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32089797	32089797	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	32089797	C	T	32089797	2	4	527	1	0	0	0	0	0	0	0	1	11708	767	27	1		1	PDZD2	5	32089797	Silent	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		32089797	148825463	28	30593											
PAPD4	167153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	78936786	78936786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	78936786	C	T	78936786	3	4	527	1	0	0	0	0	1	0	0	0	11431	594	21	2	592	2	PAPD4	5	78936786	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	46846989	78936786	101978474	29	30594											
ZNF608	57507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	123983986	123983986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	123983986	C	T	123983986	3	4	527	1	0	0	0	0	1	0	0	0	18046	710	25	2	2471	2	ZNF608	5	123983986	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	45047200	123983986	56931274	30	30595											
PHAX	51808	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	125939331	125939331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	125939331	C	T	125939331	3	4	527	1	0	0	0	0	1	0	0	0	11820	478	17	2	172	2	PHAX	5	125939331	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	1955345	125939331	54975929	31	30596											
RGL2	5863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33260019	33260019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	33260019	G	T	33260019	3	4	527	1	0	0	0	0	1	0	0	0	13290	1328	46	4	143	4	RGL2	6	33260019	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10		33260019	137855048	32	30597											
ZNF318	24149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43304999	43304999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	43304999	C	T	43304999	3	4	527	1	0	0	0	0	1	0	0	0	17848	681	24	2	106	2	ZNF318	6	43304999	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	10044980	43304999	127810068	33	30598											
CLIC5	53405	hgsc.bcm.edu;ucsc.edu	37	6	45882075	45882076	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	45882076	TC	-	45882075	7	5	527	1	0	1	0	1	0	0	0	0	3531	1435	50	0	285	0	CLIC5	6	45882075	Frame_Shift_Del	DEL	TC	TCGA-CJ-5677-01A-11D-1534-10	2577076	45882075	125232992	34	30599											
DEFB114	245928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	49928062	49928062	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	49928062	G	T	49928062	2	4	527	1	0	0	0	0	0	0	0	1	4405	987	35	4		4	DEFB114	6	49928062	Silent	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	4045987	49928062	121187005	35	30600											
DST	667	hgsc.bcm.edu;ucsc.edu	37	6	56484970	56484971	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	56484971	AG	-	56484970	7	5	527	1	0	1	0	1	0	0	0	0	4785	69	3	0	16541	0	DST	6	56484970	Frame_Shift_Del	DEL	AG	TCGA-CJ-5677-01A-11D-1534-10	6556908	56484970	114630097	36	30601											
FAM135A	57579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	71234370	71234370	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	71234370	G	C	71234370	3	2	527	1	0	0	0	0	1	0	0	0	5452	1029	36	4	1711	4	FAM135A	6	71234370	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	14749400	71234370	99880697	37	30602											
MAN1A1	4121	hgsc.bcm.edu;ucsc.edu	37	6	119522461	119522461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	119522461	A	-	119522461	7	5	527	1	0	1	0	1	0	0	0	0	9217	362	13	0	817	0	MAN1A1	6	119522461	Frame_Shift_Del	DEL	A	TCGA-CJ-5677-01A-11D-1534-10	48288091	119522461	51592606	38	30603											
THEMIS	387357	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	128134336	128134336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	128134336	C	T	128134336	3	4	527	1	0	0	0	0	1	0	0	0	15872	855	30	2	608	2	THEMIS	6	128134336	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	8611875	128134336	42980731	39	30604											
FIGNL1	63979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	50513982	50513982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	50513982	C	T	50513982	3	4	527	1	0	0	0	0	1	0	0	0	5899	623	22	2	1024	2	FIGNL1	7	50513982	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		50513982	108624681	40	30605											
ZNF479	90827	broad.mit.edu	37	7	57188569	57188569	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	57188569	T	T	57188569	3	4	527	1	0	0	0	0	1	0	0	0	17945	14	1	5	1025	5	ZNF479	7	57188569	Missense_Mutation	SNP	A	TCGA-CJ-5677-01A-11D-1534-10	6674587	57188569	101950094	41	30606											
ZNF92	168374	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	64864567	64864567	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	64864567	T	-	64864567	7	5	527	1	0	1	0	1	0	0	0	0	18213	1464	51	0	1554	0	ZNF92	7	64864567	Frame_Shift_Del	DEL	T	TCGA-CJ-5677-01A-11D-1534-10	7675998	64864567	94274096	42	30607											
WBSCR17	64409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	71142217	71142217	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	71142217	G	C	71142217	3	2	527	1	0	0	0	0	1	0	0	0	17276	942	33	4	1460	4	WBSCR17	7	71142217	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	6277650	71142217	87996446	43	30608											
ANKIB1	54467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	91924303	91924303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	91924303	C	A	91924303	3	1	527	1	0	0	0	0	1	0	0	0	630	478	17	4	13	4	ANKIB1	7	91924303	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	20782086	91924303	67214360	44	30609											
CFTR	1080	broad.mit.edu;hgsc.bcm.edu	37	7	117251654	117251654	+	Silent	SNP	T	T	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	117251654	T	G	117251654	2	3	527	1	0	0	0	0	0	0	0	1	3296	1538	54	5		5	CFTR	7	117251654	Silent	SNP	T	TCGA-CJ-5677-01A-11D-1534-10	25327351	117251654	41887009	45	30610											
RHEB	6009	hgsc.bcm.edu;ucsc.edu	37	7	151168454	151168454	+	Intron	SNP	G	G	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	151168454	G	C	151168454	1	2	527	0	1	0	0	0	0	0	0	0	13341	957	33	4		4	RHEB	7	151168454	Intron	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	33916800	151168454	7970209	46	30611											
FAM160B2	64760	broad.mit.edu;hgsc.bcm.edu	37	8	21956566	21956566	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	21956566	C	G	21956566	3	3	527	1	0	0	0	0	1	0	0	0	5475	550	19	4	902	4	FAM160B2	8	21956566	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		21956566	124407456	47	30612											
TEX15	56154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	30706524	30706524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	30706524	C	A	30706524	3	1	527	1	0	0	0	0	1	0	0	0	15791	826	29	4	8375	4	TEX15	8	30706524	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	8749958	30706524	115657498	48	30613											
TLE1	7088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	84205823	84205823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	84205823	C	T	84205823	3	4	527	1	0	0	0	0	1	0	0	0	15950	768	27	1	606	1	TLE1	9	84205823	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		84205823	57007608	49	30614											
DNM1	1759	broad.mit.edu	37	9	131012518	131012518	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	131012518	T	T	131012518	3	4	527	1	0	0	0	0	1	0	0	0	4672	710	25	2	2274	2	DNM1	9	131012518	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	46806695	131012518	10200913	50	30615											
NRG3	10718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	84745303	84745303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	84745303	G	A	84745303	3	1	527	1	0	0	0	0	1	0	0	0	10656	1058	37	1	2311	1	NRG3	10	84745303	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10		84745303	50789444	51	30616											
FAM178A	55719	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	102684302	102684302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	102684302	C	G	102684302	3	3	527	1	0	0	0	0	1	0	0	0	5507	913	32	4	1562	4	FAM178A	10	102684302	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	17938999	102684302	32850445	52	30617											
SPTY2D1	144108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18636132	18636132	+	Silent	SNP	T	T	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	18636132	T	G	18636132	2	3	527	1	0	0	0	0	0	0	0	1	15138	1393	49	5		5	SPTY2D1	11	18636132	Silent	SNP	T	TCGA-CJ-5677-01A-11D-1534-10		18636132	116370384	53	30618											
PTPN5	84867	broad.mit.edu;ucsc.edu	37	11	18764949	18764949	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	18764949	T	T	18764949	3	4	527	1	0	0	0	0	1	0	0	0	12804	652	23	1	1422	1	PTPN5	11	18764949	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	128817	18764949	116241567	54	30619											
C11orf46	0	hgsc.bcm.edu	37	11	30352756	30352756	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	30352756	A	C	30352756	3	2	527	1	0	0	0	0	1	0	0	0	1645	11	1	5	263	5	C11orf46	11	30352756	Missense_Mutation	SNP	A	TCGA-CJ-5677-01A-11D-1534-10	11587807	30352756	104653760	55	30620											
FAM55D	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	114442140	114442140	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	114442140	C	A	114442140	2	1	527	1	0	0	0	0	0	0	0	1	5594	581	21	4		4	FAM55D	11	114442140	Silent	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	84089384	114442140	20564376	56	30621											
SPA17	53340	hgsc.bcm.edu;ucsc.edu	37	11	124564181	124564203	+	Frame_Shift_Del	DEL	TTTCTCCTTTCGATGAAGGACTC	TTTCTCCTTTCGATGAAGGACTC	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	TTTCTCCTTTCGATGAAGGACTC	TTTCTCCTTTCGATGAAGGACTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	124564203	TTTCTCCTTTCGATGAAGGACTC	-	124564181	7	5	527	1	0	1	0	1	0	0	0	0	14984	1856	64	0		0	SPA17	11	124564181	Frame_Shift_Del	DEL	TTTCTCCTTTCGATGAAGGACTC	TCGA-CJ-5677-01A-11D-1534-10	10122041	124564181	10442335	57	30622											
NELL2	4753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	44915937	44915937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	44915937	C	T	44915937	3	4	527	1	0	0	0	0	1	0	0	0	10341	652	23	1	441	1	NELL2	12	44915937	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		44915937	88935958	58	30623											
SUOX	6821	broad.mit.edu;ucsc.edu	37	12	56397616	56397616	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	56397616	C	C	56397616	3	2	527	1	0	0	0	0	1	0	0	0	15407	1696	59	3	453	3	SUOX	12	56397616	Missense_Mutation	SNP	T	TCGA-CJ-5677-01A-11D-1534-10	11481679	56397616	77454279	59	30624											
INTS6	26512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	51943326	51943326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	51943326	G	T	51943326	3	4	527	1	0	0	0	0	1	0	0	0	7789	1203	42	4	450	4	INTS6	13	51943326	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10		51943326	63226552	60	30625											
HEATR5A	25938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	31817065	31817065	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	31817065	G	A	31817065	2	1	527	1	0	0	0	0	0	0	0	1	7038	987	35	2		2	HEATR5A	14	31817065	Silent	SNP	G	TCGA-CJ-5677-01A-11D-1534-10		31817065	75532475	61	30626											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7577097	7577097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	7577097	C	A	7577097	3	1	527	1	0	0	0	0	1	0	0	0	16393	913	32	4	445	4	TP53	17	7577097	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		7577097	73618113	62	30627											
TP53	7157	broad.mit.edu	37	17	7577565	7577565	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	7577565	C	C	7577565	3	2	527	1	0	0	0	0	1	0	0	0	16393	1725	60	3	574	3	TP53	17	7577565	Missense_Mutation	SNP	T	TCGA-CJ-5677-01A-11D-1534-10	468	7577565	73617645	63	30628											
NCOR1	9611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	15952284	15952284	+	Silent	SNP	T	T	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	15952284	T	G	15952284	2	3	527	1	0	0	0	0	0	0	0	1	10242	1567	55	5		5	NCOR1	17	15952284	Silent	SNP	T	TCGA-CJ-5677-01A-11D-1534-10	8374719	15952284	65242926	64	30629											
WFIKKN2	124857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48918195	48918195	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	48918195	C	G	48918195	3	3	527	1	0	0	0	0	1	0	0	0	17371	623	22	4	1552	4	WFIKKN2	17	48918195	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	32965911	48918195	32277015	65	30630											
C17orf56	0	broad.mit.edu	37	17	79204474	79204474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	79204474	A	A	79204474	3	1	527	1	0	0	0	0	1	0	0	0	1866	1087	38	1	686	1	C17orf56	17	79204474	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	30286279	79204474	1990736	66	30631											
TBCD	6904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	80765530	80765530	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	80765530	G	A	80765530	4	1	527	1	0	0	0	0	0	1	0	0	15645	1270	44	2	1176	2	TBCD	17	80765530	Nonsense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	1561056	80765530	429680	67	30632											
MATK	4145	broad.mit.edu	37	19	3783901	3783901	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	3783901	T	T	3783901	3	4	527	1	0	0	0	0	1	0	0	0	9339	884	31	1	1066	1	MATK	19	3783901	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10		3783901	55345082	68	30633											
PIAS4	51588	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4013124	4013124	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	4013124	G	A	4013124	2	1	527	1	0	0	0	0	0	0	0	1	11885	1074	38	1		1	PIAS4	19	4013124	Silent	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	229223	4013124	55115859	69	30634											
ARHGEF18	23370	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7509264	7509264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	7509264	G	A	7509264	3	1	527	1	0	0	0	0	1	0	0	0	901	1087	38	1	985	1	ARHGEF18	19	7509264	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	3496140	7509264	51619719	70	30635											
COPE	11316	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19021795	19021795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	19021795	G	A	19021795	3	1	527	1	0	0	0	0	1	0	0	0	3732	1203	42	2	683	2	COPE	19	19021795	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	11512531	19021795	40107188	71	30636											
C19orf47	126526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40829950	40829950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	40829950	C	T	40829950	3	4	527	1	0	0	0	0	1	0	0	0	1932	739	26	2	539	2	C19orf47	19	40829950	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	21808155	40829950	18299033	72	30637											
SIGLEC6	946	broad.mit.edu	37	19	52035065	52035069	+	Splice_Site	DEL	AGAGA	-	-	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	AGAGA	AGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	-	52035069	-	-	52035065	8	5	527	1	0	1	0	1	0	0	1	0	14325	203	7	0		0	SIGLEC6	19	52035065	Splice_Site	DEL	AGAGA	TCGA-CJ-5677-01A-11D-1534-10	11205115	52035065	7093918	73	30638											
ZNF28	7576	broad.mit.edu	37	19	53321205	53321205	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	53321205	C	C	53321205	3	2	527	1	0	0	0	0	1	0	0	0	17825	957	33	4		4	ZNF28	19	53321205	Missense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	1286140	53321205	5807778	74	30639											
NLRP12	91662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54313326	54313326	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	54313326	G	A	54313326	2	1	527	1	0	0	0	0	0	0	0	1	10481	1136	40	1		1	NLRP12	19	54313326	Silent	SNP	G	TCGA-CJ-5677-01A-11D-1534-10	992121	54313326	4815657	75	30640											
JPH2	57158	broad.mit.edu	37	20	42788569	42788569	+	Silent	SNP	G	A	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	42788569	A	A	42788569	2	1	527	1	0	0	0	0	0	0	0	1	7968	1335	47	2		2	JPH2	20	42788569	Silent	SNP	G	TCGA-CJ-5677-01A-11D-1534-10		42788569	20236951	76	30641											
C22orf31	25770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	29456415	29456415	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	29456415	T	C	29456415	2	2	527	1	0	0	0	0	0	0	0	1	2145	1538	54	3		3	C22orf31	22	29456415	Silent	SNP	T	TCGA-CJ-5677-01A-11D-1534-10		29456415	21848151	77	30642											
SCML1	6322	broad.mit.edu	37	X	17763603	17763603	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	17763603	T	T	17763603	4	4	527	1	0	0	0	0	0	1	0	0	13922	1291	45	4	67	4	SCML1	23	17763603	Nonsense_Mutation	SNP	G	TCGA-CJ-5677-01A-11D-1534-10		17763603	137506957	78	30643											
PHF16	9767	broad.mit.edu;ucsc.edu	37	X	46887397	46887397	+	Silent	SNP	A	C	C	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	C	46887397	C	C	46887397	2	2	527	1	0	0	0	0	0	0	0	1	11834	407	15	5		5	PHF16	23	46887397	Silent	SNP	A	TCGA-CJ-5677-01A-11D-1534-10	29123794	46887397	108383163	79	30644											
AKAP4	8852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	49957227	49957227	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	A	49957227	T	A	49957227	4	1	527	1	0	0	0	0	0	1	0	0	453	1763	61	5	435	5	AKAP4	23	49957227	Nonsense_Mutation	SNP	T	TCGA-CJ-5677-01A-11D-1534-10	3069830	49957227	105313333	80	30645											
SHROOM4	57477	hgsc.bcm.edu	37	X	50350758	50350758	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	T	50350758	C	T	50350758	2	4	527	1	0	0	0	0	0	0	0	1	14309	912	32	2		2	SHROOM4	23	50350758	Silent	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	393531	50350758	104919802	81	30646											
USP51	158880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	55514285	55514285	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5677-01A-11D-1534-10	TCGA-CJ-5677-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	70fe0b18-52d1-40f7-b2a3-c808b3009610	d637e1a3-936e-4e97-b95e-bced6aec8594	G	55514285	C	G	55514285	3	3	527	1	0	0	0	0	1	0	0	0	17095	913	32	4	1051	4	USP51	23	55514285	Missense_Mutation	SNP	C	TCGA-CJ-5677-01A-11D-1534-10	5163527	55514285	99756275	82	30647											
PHACTR4	65979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	28764918	28764918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	28764918	G	T	28764918	3	4	528	1	0	0	0	0	1	0	0	0	11819	942	33	4	45	4	PHACTR4	1	28764918	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10		28764918	220485703	1	30648											
GBP7	388646	hgsc.bcm.edu;ucsc.edu	37	1	89615167	89615168	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	-	89615168	CT	-	89615167	7	5	528	1	0	1	0	1	0	0	0	0	6286	564	20	0	976	0	GBP7	1	89615167	Frame_Shift_Del	DEL	CT	TCGA-CJ-5678-01A-11D-1534-10	60850249	89615167	159635454	2	30649											
DDX20	11218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	112309100	112309100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	112309100	C	A	112309100	3	1	528	1	0	0	0	0	1	0	0	0	4350	913	32	4	2096	4	DDX20	1	112309100	Missense_Mutation	SNP	C	TCGA-CJ-5678-01A-11D-1534-10	22693933	112309100	136941521	3	30650											
MUC1	4582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155160211	155160211	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	155160211	G	T	155160211	2	4	528	1	0	0	0	0	0	0	0	1	9977	932	33	4		4	MUC1	1	155160211	Silent	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	42851111	155160211	94090410	4	30651											
LRRC52	440699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	165513950	165513950	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	165513950	A	T	165513950	3	4	528	1	0	0	0	0	1	0	0	0	9017	446	16	5	419	5	LRRC52	1	165513950	Missense_Mutation	SNP	A	TCGA-CJ-5678-01A-11D-1534-10	10353739	165513950	83736671	5	30652											
DUSP27	92235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	167097025	167097025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	167097025	A	T	167097025	3	4	528	1	0	0	0	0	1	0	0	0	4826	333	12	5	2675	5	DUSP27	1	167097025	Missense_Mutation	SNP	A	TCGA-CJ-5678-01A-11D-1534-10	1583075	167097025	82153596	6	30653											
GREB1	9687	broad.mit.edu;ucsc.edu	37	2	11738892	11738892	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	11738892	A	A	11738892	3	1	528	1	0	0	0	0	1	0	0	0	6767	479	17	4	2401	4	GREB1	2	11738892	Missense_Mutation	SNP	C	TCGA-CJ-5678-01A-11D-1534-10		11738892	231460481	7	30654											
FAM82A1	0	hgsc.bcm.edu	37	2	38179040	38179040	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	38179040	C	T	38179040	4	4	528	1	0	0	0	0	0	1	0	0	5637	479	17	2	1144	2	FAM82A1	2	38179040	Nonsense_Mutation	SNP	C	TCGA-CJ-5678-01A-11D-1534-10	26440148	38179040	205020333	8	30655											
CCDC148	130940	broad.mit.edu;ucsc.edu	37	2	159196824	159196824	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	C	159196824	C	C	159196824	3	2	528	1	0	0	0	0	1	0	0	0	2784	1638	57	3	1451	3	CCDC148	2	159196824	Missense_Mutation	SNP	T	TCGA-CJ-5678-01A-11D-1534-10	121017784	159196824	84002549	9	30656											
CASP10	843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	202082403	202082403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	202082403	C	A	202082403	3	1	528	1	0	0	0	0	1	0	0	0	2671	681	24	4	1542	4	CASP10	2	202082403	Missense_Mutation	SNP	C	TCGA-CJ-5678-01A-11D-1534-10	42885579	202082403	41116970	10	30657											
INO80D	54891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	206870035	206870035	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	G	206870035	C	G	206870035	3	3	528	1	0	0	0	0	1	0	0	0	7756	623	22	4	946	4	INO80D	2	206870035	Missense_Mutation	SNP	C	TCGA-CJ-5678-01A-11D-1534-10	4787632	206870035	36329338	11	30658											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47164730	47164730	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	47164730	T	A	47164730	4	1	528	1	0	0	0	0	0	1	0	0	14144	1763	61	5	6374	5	SETD2	3	47164730	Nonsense_Mutation	SNP	T	TCGA-CJ-5678-01A-11D-1534-10		47164730	150857700	12	30659											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52620517	52620518	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	C	52620518	-	C	52620517	7	5	528	1	0	1	1	0	0	0	0	0	11498	1319	46	0	1633	0	PBRM1	3	52620517	Frame_Shift_Ins	INS	-	TCGA-CJ-5678-01A-11D-1534-10	5455787	52620517	145401913	13	30660											
NR1I2	8856	broad.mit.edu	37	3	119528962	119528962	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	119528962	A	A	119528962	4	1	528	1	0	0	0	0	0	1	0	0	10627	776	27	4	379	4	NR1I2	3	119528962	Nonsense_Mutation	SNP	C	TCGA-CJ-5678-01A-11D-1534-10	66908445	119528962	78493468	14	30661											
UBA5	79876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	132387762	132387762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	G	132387762	A	G	132387762	3	3	528	1	0	0	0	0	1	0	0	0	16842	217	8	3	412	3	UBA5	3	132387762	Missense_Mutation	SNP	A	TCGA-CJ-5678-01A-11D-1534-10	12858800	132387762	65634668	15	30662											
CORIN	10699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	47788855	47788855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	47788855	G	T	47788855	3	4	528	1	0	0	0	0	1	0	0	0	3754	1377	48	4	2912	4	CORIN	4	47788855	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10		47788855	143365421	16	30663											
C4orf33	132321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	130023911	130023911	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	G	130023911	C	G	130023911	3	3	528	1	0	0	0	0	1	0	0	0	2265	594	21	4	148	4	C4orf33	4	130023911	Missense_Mutation	SNP	C	TCGA-CJ-5678-01A-11D-1534-10	82235056	130023911	61130365	17	30664											
NSUN2	54888	hgsc.bcm.edu;ucsc.edu	37	5	6620322	6620322	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	-	6620322	C	-	6620322	7	5	528	1	0	1	0	1	0	0	0	0	10685	507	18	0	1643	0	NSUN2	5	6620322	Frame_Shift_Del	DEL	C	TCGA-CJ-5678-01A-11D-1534-10		6620322	174294938	18	30665											
CARD6	84674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	40843790	40843790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	40843790	G	A	40843790	3	1	528	1	0	0	0	0	1	0	0	0	2652	1175	41	2	826	2	CARD6	5	40843790	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	34223468	40843790	140071470	19	30666											
YTHDC2	64848	hgsc.bcm.edu	37	5	112899158	112899165	+	Frame_Shift_Del	DEL	TAATTGTA	TAATTGTA	-	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	TAATTGTA	TAATTGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	-	112899165	TAATTGTA	-	112899158	7	5	528	1	0	1	0	1	0	0	0	0	17509	1764	61	0	2485	0	YTHDC2	5	112899158	Frame_Shift_Del	DEL	TAATTGTA	TCGA-CJ-5678-01A-11D-1534-10	72055368	112899158	68016102	20	30667											
ABLIM3	22885	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	148629402	148629402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	C	148629402	A	C	148629402	3	2	528	1	0	0	0	0	1	0	0	0	96	275	10	5	1794	5	ABLIM3	5	148629402	Missense_Mutation	SNP	A	TCGA-CJ-5678-01A-11D-1534-10	35730244	148629402	32285858	21	30668											
RASGEF1C	255426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179538533	179538533	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	C	179538533	T	C	179538533	2	2	528	1	0	0	0	0	0	0	0	1	13084	1722	60	3		3	RASGEF1C	5	179538533	Silent	SNP	T	TCGA-CJ-5678-01A-11D-1534-10	30909131	179538533	1376727	22	30669											
DSP	1832	broad.mit.edu;hgsc.bcm.edu	37	6	7583787	7583787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	7583787	G	T	7583787	3	4	528	1	0	0	0	0	1	0	0	0	4783	1290	45	4	6386	4	DSP	6	7583787	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10		7583787	163531280	23	30670											
ZKSCAN3	80317	broad.mit.edu;hgsc.bcm.edu	37	6	28333631	28333631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	G	28333631	A	G	28333631	3	3	528	1	0	0	0	0	1	0	0	0	17700	247	9	3	1204	3	ZKSCAN3	6	28333631	Missense_Mutation	SNP	A	TCGA-CJ-5678-01A-11D-1534-10	20749844	28333631	142781436	24	30671											
PRICKLE4	29964	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	41752690	41752690	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	41752690	C	T	41752690	2	4	528	1	0	0	0	0	0	0	0	1	12499	610	22	2		2	PRICKLE4	6	41752690	Silent	SNP	C	TCGA-CJ-5678-01A-11D-1534-10	13419059	41752690	129362377	25	30672											
ZNF451	26036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	57013144	57013144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	57013144	G	A	57013144	3	1	528	1	0	0	0	0	1	0	0	0	17934	1087	38	1	2299	1	ZNF451	6	57013144	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	15260454	57013144	114101923	26	30673											
C6orf58	352999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	127902329	127902329	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	G	127902329	T	G	127902329	4	3	528	1	0	0	0	0	0	1	0	0	2369	1500	52	5	590	5	C6orf58	6	127902329	Nonsense_Mutation	SNP	T	TCGA-CJ-5678-01A-11D-1534-10	70889185	127902329	43212738	27	30674											
GRM1	2911	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	146720336	146720336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	146720336	G	T	146720336	3	4	528	1	0	0	0	0	1	0	0	0	6803	1261	44	4	2187	4	GRM1	6	146720336	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	18818007	146720336	24394731	28	30675											
ESR1	2099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152382174	152382174	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	152382174	G	T	152382174	2	4	528	1	0	0	0	0	0	0	0	1	5258	1306	46	4		4	ESR1	6	152382174	Silent	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	5661838	152382174	18732893	29	30676											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152473119	152473120	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	-	152473120	AC	-	152473119	7	5	528	1	0	1	0	1	0	0	0	0	15457	275	10	0	2231	0	SYNE1	6	152473119	Frame_Shift_Del	DEL	AC	TCGA-CJ-5678-01A-11D-1534-10	90945	152473119	18641948	30	30677											
TNRC18	84629	broad.mit.edu	37	7	5352533	5352533	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	-	5352533	-	-	5352533	7	5	528	1	0	1	0	1	0	0	0	0	16351	987	35	0	933	0	TNRC18	7	5352533	Frame_Shift_Del	DEL	G	TCGA-CJ-5678-01A-11D-1534-10		5352533	153786130	31	30678											
MLL3	58508	broad.mit.edu	37	7	151962258	151962258	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	C	151962258	C	C	151962258	3	2	528	1	0	0	0	0	1	0	0	0	9629	1116	39	4	13894	4	MLL3	7	151962258	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	146609725	151962258	7176405	32	30679											
PPP2CB	5516	broad.mit.edu;ucsc.edu	37	8	30651536	30651536	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	30651536	T	T	30651536	4	4	528	1	0	0	0	0	0	1	0	0	12391	1294	45	4	306	4	PPP2CB	8	30651536	Nonsense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10		30651536	115712486	33	30680											
UBR5	51366	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	103297526	103297526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	G	103297526	A	G	103297526	3	3	528	1	0	0	0	0	1	0	0	0	16917	217	8	3	2954	3	UBR5	8	103297526	Missense_Mutation	SNP	A	TCGA-CJ-5678-01A-11D-1534-10	72645990	103297526	43066496	34	30681											
TRPM3	80036	hgsc.bcm.edu;ucsc.edu	37	9	73150983	73150984	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	-	73150984	TC	-	73150983	7	5	528	1	0	1	0	1	0	0	0	0	16599	1770	62	0	117	0	TRPM3	9	73150983	Frame_Shift_Del	DEL	TC	TCGA-CJ-5678-01A-11D-1534-10		73150983	68062448	35	30682											
ITIH5	80760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	7683956	7683956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	7683956	G	A	7683956	3	1	528	1	0	0	0	0	1	0	0	0	7914	942	33	2	2780	2	ITIH5	10	7683956	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10		7683956	127850791	36	30683											
PPP2R2D	55844	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	133748061	133748061	+	Splice_Site	SNP	T	T	G	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	G	133748061	T	G	133748061	5	3	528	1	0	0	0	0	0	0	1	0	12397	1681	58	5	104	5	PPP2R2D	10	133748061	Splice_Site	SNP	T	TCGA-CJ-5678-01A-11D-1534-10	126064105	133748061	1786686	37	30684											
PDDC1	347862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	771046	771046	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	G	771046	A	G	771046	2	3	528	1	0	0	0	0	0	0	0	1	11636	214	8	3		3	PDDC1	11	771046	Silent	SNP	A	TCGA-CJ-5678-01A-11D-1534-10		771046	134235470	38	30685											
OR4C12	283093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	50003264	50003264	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	50003264	G	T	50003264	2	4	528	1	0	0	0	0	0	0	0	1	11053	958	34	4		4	OR4C12	11	50003264	Silent	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	49232218	50003264	85003252	39	30686											
GLB1L3	112937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	134188593	134188593	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	134188593	G	A	134188593	2	1	528	1	0	0	0	0	0	0	0	1	6437	933	33	2		2	GLB1L3	11	134188593	Silent	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	84185329	134188593	817923	40	30687											
DNAJC14	85406	hgsc.bcm.edu;ucsc.edu	37	12	56221492	56221492	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	-	56221492	T	-	56221492	7	5	528	1	0	1	0	1	0	0	0	0	4635	1509	53	0	1181	0	DNAJC14	12	56221492	Frame_Shift_Del	DEL	T	TCGA-CJ-5678-01A-11D-1534-10		56221492	77630403	41	30688											
FMN1	342184	hgsc.bcm.edu;ucsc.edu	37	15	33261665	33261668	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	-	33261668	AGTT	-	33261665	7	5	528	1	0	1	0	1	0	0	0	0	5956	72	3	0	2078	0	FMN1	15	33261665	Frame_Shift_Del	DEL	AGTT	TCGA-CJ-5678-01A-11D-1534-10		33261665	69269727	42	30689											
ZFP106	64397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42742412	42742412	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	42742412	G	A	42742412	2	1	528	1	0	0	0	0	0	0	0	1	17649	1252	44	2		2	ZFP106	15	42742412	Silent	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	9480747	42742412	59788980	43	30690											
UNKL	64718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1417749	1417749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	C	1417749	T	C	1417749	3	2	528	1	0	0	0	0	1	0	0	0	17013	1841	64	3	517	3	UNKL	16	1417749	Missense_Mutation	SNP	T	TCGA-CJ-5678-01A-11D-1534-10		1417749	88937004	44	30691											
C16orf93	90835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30768957	30768957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	30768957	C	T	30768957	3	4	528	1	0	0	0	0	1	0	0	0	1848	884	31	1	163	1	C16orf93	16	30768957	Missense_Mutation	SNP	C	TCGA-CJ-5678-01A-11D-1534-10	29351208	30768957	59585796	45	30692											
TRIM16	10626	broad.mit.edu	37	17	15498178	15498178	+	Silent	SNP	C	T	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	15498178	T	T	15498178	2	4	528	1	0	0	0	0	0	0	0	1	16503	813	29	2		2	TRIM16	17	15498178	Silent	SNP	C	TCGA-CJ-5678-01A-11D-1534-10		15498178	65697032	46	30693											
MED1	5469	hgsc.bcm.edu;ucsc.edu	37	17	37580984	37580984	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	-	37580984	T	-	37580984	7	5	528	1	0	1	0	1	0	0	0	0	9432	1422	50	0	4026	0	MED1	17	37580984	Frame_Shift_Del	DEL	T	TCGA-CJ-5678-01A-11D-1534-10	22082806	37580984	43614226	47	30694											
SPPL2B	56928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2353056	2353056	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	G	2353056	C	G	2353056	3	3	528	1	0	0	0	0	1	0	0	0	15101	855	30	4	1706	4	SPPL2B	19	2353056	Missense_Mutation	SNP	C	TCGA-CJ-5678-01A-11D-1534-10		2353056	56775927	48	30695											
CD209	30835	broad.mit.edu;hgsc.bcm.edu	37	19	7809904	7809904	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	T	7809904	G	T	7809904	2	4	528	1	0	0	0	0	0	0	0	1	2986	1086	38	4		4	CD209	19	7809904	Silent	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	5456848	7809904	51319079	49	30696											
ZNF83	55769	broad.mit.edu;hgsc.bcm.edu	37	19	53117760	53117760	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	53117760	T	A	53117760	3	1	528	1	0	0	0	0	1	0	0	0	18195	1841	64	5	1496	5	ZNF83	19	53117760	Missense_Mutation	SNP	T	TCGA-CJ-5678-01A-11D-1534-10	45307856	53117760	6011223	50	30697											
NLRP2	55655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55489152	55489152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	55489152	G	A	55489152	3	1	528	1	0	0	0	0	1	0	0	0	10484	1145	40	1	368	1	NLRP2	19	55489152	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10	2371392	55489152	3639831	51	30698											
ZHX3	23051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39831542	39831542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	C	39831542	G	C	39831542	3	2	528	1	0	0	0	0	1	0	0	0	17689	1261	44	4	863	4	ZHX3	20	39831542	Missense_Mutation	SNP	G	TCGA-CJ-5678-01A-11D-1534-10		39831542	23193978	52	30699	370	2									
ZHX3	23051	broad.mit.edu;ucsc.edu	37	20	39831543	39831543	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	C	39831543	C	C	39831543	3	2	528	1	0	0	0	0	1	0	0	0	17689	1667	58	3	864	3	ZHX3	20	39831543	Missense_Mutation	SNP	T	TCGA-CJ-5678-01A-11D-1534-10	1	39831543	23193977	53	30700	370	2									
TP53TG5	27296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44004124	44004124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	C	44004124	T	C	44004124	3	2	528	1	0	0	0	0	1	0	0	0	16403	1609	56	3	557	3	TP53TG5	20	44004124	Missense_Mutation	SNP	T	TCGA-CJ-5678-01A-11D-1534-10	4172581	44004124	19021396	54	30701											
DDX3Y	8653	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	Y	15024911	15024911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5678-01A-11D-1534-10	TCGA-CJ-5678-11A-01D-1534-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d49759a2-d2a9-48ba-9447-e42c9d3d64c7	1e675a0b-3ea8-47a9-a732-87a7c6fe0dd2	A	15024911	T	A	15024911	3	1	528	1	0	0	0	0	1	0	0	0	4361	1809	63	5	496	5	DDX3Y	24	15024911	Missense_Mutation	SNP	T	TCGA-CJ-5678-01A-11D-1534-10		15024911	44348655	55	30702											
KCNAB2	8514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	6157369	6157369	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	-	6157369	G	-	6157369	7	5	529	1	0	1	0	1	0	0	0	0	8017	1335	47	0	1020	0	KCNAB2	1	6157369	Frame_Shift_Del	DEL	G	TCGA-CJ-5679-01A-11D-1534-10		6157369	243093252	1	30703											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11184573	11184573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	11184573	G	T	11184573	3	4	529	1	0	0	0	0	1	0	0	0	9961	942	33	4	1053	4	MTOR	1	11184573	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	5027204	11184573	238066048	2	30704											
KAZ	0	broad.mit.edu;hgsc.bcm.edu	37	1	15428039	15428039	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	15428039	C	T	15428039	2	4	529	1	0	0	0	0	0	0	0	1	7995	753	26	2		2	KAZ	1	15428039	Silent	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	4243466	15428039	233822582	3	30705											
TCEA3	6920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	23743879	23743879	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	23743879	G	A	23743879	2	1	529	1	0	0	0	0	0	0	0	1	15681	1219	43	2		2	TCEA3	1	23743879	Silent	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	8315840	23743879	225506742	4	30706											
NASP	4678	hgsc.bcm.edu	37	1	46073373	46073373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	46073373	G	A	46073373	3	1	529	1	0	0	0	0	1	0	0	0	10179	1233	43	2	889	2	NASP	1	46073373	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	22329494	46073373	203177248	5	30707											
WDR78	79819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67301400	67301400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	67301400	C	T	67301400	3	4	529	1	0	0	0	0	1	0	0	0	17340	797	28	2	932	2	WDR78	1	67301400	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	21228027	67301400	181949221	6	30708											
LPHN2	23266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	82456186	82456186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	82456186	A	C	82456186	3	2	529	1	0	0	0	0	1	0	0	0	8923	130	5	5	3643	5	LPHN2	1	82456186	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	15154786	82456186	166794435	7	30709											
FMO5	2330	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	146672930	146672930	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	146672930	G	A	146672930	2	1	529	1	0	0	0	0	0	0	0	1	5965	1335	47	2		2	FMO5	1	146672930	Silent	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	64216744	146672930	102577691	8	30710											
TPR	7175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186303510	186303510	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	186303510	G	C	186303510	3	2	529	1	0	0	0	0	1	0	0	0	16428	1029	36	4	2026	4	TPR	1	186303510	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	39630580	186303510	62947111	9	30711											
FMN2	56776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	240492737	240492737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	240492737	G	A	240492737	3	1	529	1	0	0	0	0	1	0	0	0	5957	1087	38	1	4444	1	FMN2	1	240492737	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	54189227	240492737	8757884	10	30712											
TSSC1	7260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	3217939	3217939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	3217939	T	C	3217939	3	2	529	1	0	0	0	0	1	0	0	0	16678	1783	62	3	686	3	TSSC1	2	3217939	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10		3217939	239981434	11	30713	371	2									
TSSC1	7260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	3217940	3217940	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	3217940	C	A	3217940	4	1	529	1	0	0	0	0	0	1	0	0	16678	864	30	4	687	4	TSSC1	2	3217940	Nonsense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	1	3217940	239981433	12	30714	371	2									
DNAH6	1768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	84880607	84880607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	84880607	G	A	84880607	3	1	529	1	0	0	0	0	1	0	0	0	4607	1261	44	2	5373	2	DNAH6	2	84880607	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	81662667	84880607	158318766	13	30715											
DPP10	57628	broad.mit.edu;hgsc.bcm.edu	37	2	116510751	116510751	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	116510751	G	T	116510751	4	4	529	1	0	0	0	0	0	1	0	0	4729	956	33	4	1165	4	DPP10	2	116510751	Nonsense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	31630144	116510751	126688622	14	30716											
XIRP2	129446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	168103812	168103812	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	168103812	G	C	168103812	3	2	529	1	0	0	0	0	1	0	0	0	17442	933	33	4	5940	4	XIRP2	2	168103812	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	51593061	168103812	75095561	15	30717											
ALS2CR12	130540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	202172343	202172343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	202172343	T	C	202172343	3	2	529	1	0	0	0	0	1	0	0	0	553	1850	64	3	579	3	ALS2CR12	2	202172343	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10	34068531	202172343	41027030	16	30718											
ERBB4	2066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	212426720	212426720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	212426720	T	A	212426720	3	1	529	1	0	0	0	0	1	0	0	0	5211	1406	49	5	1567	5	ERBB4	2	212426720	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10	10254377	212426720	30772653	17	30719	372	2									
ERBB4	2066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	212426721	212426721	+	Silent	SNP	A	A	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	212426721	A	T	212426721	2	4	529	1	0	0	0	0	0	0	0	1	5211	349	13	5		5	ERBB4	2	212426721	Silent	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	1	212426721	30772652	18	30720	372	2									
WDR69	164781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228754578	228754578	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	228754578	T	A	228754578	3	1	529	1	0	0	0	0	1	0	0	0	17331	1461	51	5	130	5	WDR69	2	228754578	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10	16327857	228754578	14444795	19	30721											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52584643	52584643	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	-	52584643	A	-	52584643	7	5	529	1	0	1	0	1	0	0	0	0	11498	131	5	0	386	0	PBRM1	3	52584643	Frame_Shift_Del	DEL	A	TCGA-CJ-5679-01A-11D-1534-10		52584643	145437787	20	30722											
ATXN7	6314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	63981575	63981575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	63981575	C	A	63981575	3	1	529	1	0	0	0	0	1	0	0	0	1215	827	29	4	2183	4	ATXN7	3	63981575	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	11396932	63981575	134040855	21	30723											
RAB43	339122	broad.mit.edu;hgsc.bcm.edu	37	3	128813995	128813995	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	128813995	C	A	128813995	2	1	529	1	0	0	0	0	0	0	0	1	12958	639	23	4		4	RAB43	3	128813995	Silent	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	64832420	128813995	69208435	22	30724											
GPR160	26996	broad.mit.edu;hgsc.bcm.edu	37	3	169802072	169802072	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	169802072	T	C	169802072	2	2	529	1	0	0	0	0	0	0	0	1	6671	1596	56	3		3	GPR160	3	169802072	Silent	SNP	T	TCGA-CJ-5679-01A-11D-1534-10	40988077	169802072	28220358	23	30725											
DCUN1D1	54165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	182683307	182683336	+	Frame_Shift_Del	DEL	TCACAAGCAAGCACTCACCTTTGTATCTAT	TCACAAGCAAGCACTCACCTTTGTATCTAT	-	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	TCACAAGCAAGCACTCACCTTTGTATCTAT	TCACAAGCAAGCACTCACCTTTGTATCTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	-	182683336	TCACAAGCAAGCACTCACCTTTGTATCTAT	-	182683307	7	5	529	1	0	1	0	1	0	0	0	0	4315	1682	58	0		0	DCUN1D1	3	182683307	Frame_Shift_Del	DEL	TCACAAGCAAGCACTCACCTTTGTATCTAT	TCGA-CJ-5679-01A-11D-1534-10	12881235	182683307	15339123	24	30726											
SENP5	205564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	196650309	196650309	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	G	196650309	C	G	196650309	3	3	529	1	0	0	0	0	1	0	0	0	14062	912	32	4	1931	4	SENP5	3	196650309	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	13967002	196650309	1372121	25	30727											
EGF	1950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	110862256	110862256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	110862256	A	T	110862256	3	4	529	1	0	0	0	0	1	0	0	0	4964	11	1	5	288	5	EGF	4	110862256	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10		110862256	80292020	26	30728											
MAB21L2	10586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	151504561	151504561	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	151504561	A	T	151504561	3	4	529	1	0	0	0	0	1	0	0	0	9149	72	3	5	382	5	MAB21L2	4	151504561	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	40642305	151504561	39649715	27	30729											
FBXO4	26272	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	41927219	41927219	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	41927219	G	A	41927219	2	1	529	1	0	0	0	0	0	0	0	1	5755	1364	48	2		2	FBXO4	5	41927219	Silent	SNP	G	TCGA-CJ-5679-01A-11D-1534-10		41927219	138988041	28	30730											
SEPP1	6414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	42807034	42807035	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	-	42807035	AA	-	42807034	7	5	529	1	0	1	0	1	0	0	0	0	14070	372	13	0	777	0	SEPP1	5	42807034	Frame_Shift_Del	DEL	AA	TCGA-CJ-5679-01A-11D-1534-10	879815	42807034	138108226	29	30731											
MAST4	375449	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66459741	66459741	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	66459741	G	A	66459741	2	1	529	1	0	0	0	0	0	0	0	1	9334	1045	37	1		1	MAST4	5	66459741	Silent	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	23652707	66459741	114455519	30	30732											
SLC30A5	64924	broad.mit.edu	37	5	68414420	68414420	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	G	68414420	G	G	68414420	3	3	529	1	0	0	0	0	1	0	0	0	14571	333	12	3	1668	3	SLC30A5	5	68414420	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	1954679	68414420	112500840	31	30733											
HSPA9	3313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137895767	137895767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	G	137895767	A	G	137895767	3	3	529	1	0	0	0	0	1	0	0	0	7424	391	14	3	871	3	HSPA9	5	137895767	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	69481347	137895767	43019493	32	30734											
KCTD20	222658	broad.mit.edu;ucsc.edu	37	6	36442785	36442785	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	36442785	A	A	36442785	3	1	529	1	0	0	0	0	1	0	0	0	8115	1145	40	1	386	1	KCTD20	6	36442785	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10		36442785	134672282	33	30735											
FAM83B	222584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	54806759	54806759	+	Missense_Mutation	SNP	G	G	A	rs146473058		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	54806759	G	A	54806759	3	1	529	1	0	0	0	0	1	0	0	0	5641	1058	37	1	3004	1	FAM83B	6	54806759	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	18363974	54806759	116308308	34	30736											
FRK	2444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	116288847	116288847	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	116288847	T	A	116288847	3	1	529	1	0	0	0	0	1	0	0	0	6055	1838	64	5	871	5	FRK	6	116288847	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10	61482088	116288847	54826220	35	30737											
C7orf50	84310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	1037413	1037413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	1037413	G	T	1037413	3	4	529	1	0	0	0	0	1	0	0	0	2401	962	34	4	155	4	C7orf50	7	1037413	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10		1037413	158101250	36	30738											
IQCE	23288	broad.mit.edu;hgsc.bcm.edu	37	7	2629606	2629606	+	Silent	SNP	C	C	G	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	G	2629606	C	G	2629606	2	3	529	1	0	0	0	0	0	0	0	1	7813	668	24	4		4	IQCE	7	2629606	Silent	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	1592193	2629606	156509057	37	30739											
ISPD	729920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	16445697	16445697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	16445697	T	C	16445697	3	2	529	1	0	0	0	0	1	0	0	0	7871	1763	61	3	868	3	ISPD	7	16445697	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10	13816091	16445697	142692966	38	30740											
ASB4	51666	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	95157534	95157534	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	95157534	C	T	95157534	2	4	529	1	0	0	0	0	0	0	0	1	1025	726	26	2		2	ASB4	7	95157534	Silent	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	78711837	95157534	63981129	39	30741											
PILRA	29992	broad.mit.edu;ucsc.edu	37	7	99987688	99987688	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	G	99987688	G	G	99987688	3	3	529	1	0	0	0	0	1	0	0	0	11932	1493	52	5	642	5	PILRA	7	99987688	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10	4830154	99987688	59150975	40	30742											
OR2A12	346525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	143792898	143792898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	143792898	G	T	143792898	3	4	529	1	0	0	0	0	1	0	0	0	10982	1087	38	4	700	4	OR2A12	7	143792898	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	43805210	143792898	15345765	41	30743											
SSPO	23145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	149480310	149480310	+	Silent	SNP	A	A	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	149480310	A	C	149480310	2	2	529	1	0	0	0	0	0	0	0	1	15201	72	3	5		5	SSPO	7	149480310	Silent	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	5687412	149480310	9658353	42	30744											
DOCK5	80005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	25189787	25189787	+	Missense_Mutation	SNP	A	A	T	rs185726789	by1000genomes;alternate_allele	TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	25189787	A	T	25189787	3	4	529	1	0	0	0	0	1	0	0	0	4692	14	1	5	1998	5	DOCK5	8	25189787	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10		25189787	121174235	43	30745											
MTDH	92140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	98703400	98703400	+	Silent	SNP	A	A	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	98703400	A	C	98703400	2	2	529	1	0	0	0	0	0	0	0	1	9924	117	5	5		5	MTDH	8	98703400	Silent	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	73513613	98703400	47660622	44	30746											
MURC	347273	broad.mit.edu;hgsc.bcm.edu	37	9	103348313	103348313	+	Silent	SNP	A	A	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	103348313	A	C	103348313	2	2	529	1	0	0	0	0	0	0	0	1	9994	410	15	5		5	MURC	9	103348313	Silent	SNP	A	TCGA-CJ-5679-01A-11D-1534-10		103348313	37865118	45	30747											
COL27A1	85301	hgsc.bcm.edu;ucsc.edu	37	9	117053135	117053135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	117053135	G	T	117053135	3	4	529	1	0	0	0	0	1	0	0	0	3687	1348	47	4	4604	4	COL27A1	9	117053135	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	13704822	117053135	24160296	46	30748											
FAM129B	64855	broad.mit.edu;hgsc.bcm.edu	37	9	130287413	130287413	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	130287413	G	A	130287413	2	1	529	1	0	0	0	0	0	0	0	1	5441	1103	39	1		1	FAM129B	9	130287413	Silent	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	13234278	130287413	10926018	47	30749											
ERCC6	2074	broad.mit.edu;hgsc.bcm.edu	37	10	50732744	50732744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	50732744	C	A	50732744	3	1	529	1	0	0	0	0	1	0	0	0	5219	912	32	4	3817	4	ERCC6	10	50732744	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10		50732744	84802003	48	30750											
C10orf53	282966	broad.mit.edu	37	10	50887761	50887761	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	-	50887761	-	-	50887761	7	5	529	1	0	1	0	1	0	0	0	0	1608	1335	47	0	20	0	C10orf53	10	50887761	Frame_Shift_Del	DEL	G	TCGA-CJ-5679-01A-11D-1534-10	155017	50887761	84646986	49	30751											
CTNNA3	29119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	68940123	68940123	+	Silent	SNP	G	G	A	rs146754105		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	68940123	G	A	68940123	2	1	529	1	0	0	0	0	0	0	0	1	4016	1136	40	1		1	CTNNA3	10	68940123	Silent	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	18052362	68940123	66594624	50	30752											
WDR11	55717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	122624668	122624668	+	Missense_Mutation	SNP	G	G	C	rs145467317	alternate_allele	TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	122624668	G	C	122624668	3	2	529	1	0	0	0	0	1	0	0	0	17285	1261	44	4	845	4	WDR11	10	122624668	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	53684545	122624668	12910079	51	30753											
TRIM22	10346	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5727831	5727831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	5727831	T	C	5727831	3	2	529	1	0	0	0	0	1	0	0	0	16508	1493	52	3	772	3	TRIM22	11	5727831	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10		5727831	129278685	52	30754											
C11orf42	160298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6231300	6231300	+	Missense_Mutation	SNP	G	G	A	rs148934108		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	6231300	G	A	6231300	3	1	529	1	0	0	0	0	1	0	0	0	1643	1116	39	1	299	1	C11orf42	11	6231300	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	503469	6231300	128775216	53	30755			1	61		3	3	445	N	G_C	9.253368e-07
C11orf42	160298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6231320	6231320	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	6231320	C	T	6231320	4	4	529	1	0	0	0	0	0	1	0	0	1643	644	23	1	319	1	C11orf42	11	6231320	Nonsense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	20	6231320	128775196	54	30756			1	61		3	3	445	N	G_C	9.253368e-07
C11orf42	160298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6231744	6231744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	6231744	C	T	6231744	3	4	529	1	0	0	0	0	1	0	0	0	1643	565	20	2	743	2	C11orf42	11	6231744	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	424	6231744	128774772	55	30757			1	61		3	3	445	N	G_C	9.253368e-07
SBF2	81846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	9868520	9868520	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	G	9868520	T	G	9868520	3	3	529	1	0	0	0	0	1	0	0	0	13872	1696	59	5	2704	5	SBF2	11	9868520	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10	3636776	9868520	125137996	56	30758											
MICALCL	84953	broad.mit.edu;hgsc.bcm.edu	37	11	12316279	12316279	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	12316279	A	C	12316279	3	2	529	1	0	0	0	0	1	0	0	0	9579	246	9	5	1307	5	MICALCL	11	12316279	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	2447759	12316279	122690237	57	30759											
TNKS1BP1	85456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57076422	57076422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	57076422	C	T	57076422	3	4	529	1	0	0	0	0	1	0	0	0	16332	536	19	1	1450	1	TNKS1BP1	11	57076422	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	44760143	57076422	77930094	58	30760											
SLC37A2	219855	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124955896	124955896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	124955896	C	T	124955896	3	4	529	1	0	0	0	0	1	0	0	0	14611	855	30	2	1538	2	SLC37A2	11	124955896	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	67879474	124955896	10050620	59	30761											
C1S	716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7177889	7177889	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	7177889	G	T	7177889	2	4	529	1	0	0	0	0	0	0	0	1	1976	1219	43	4		4	C1S	12	7177889	Silent	SNP	G	TCGA-CJ-5679-01A-11D-1534-10		7177889	126674006	60	30762											
C1R	715	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7242701	7242701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	7242701	A	T	7242701	3	4	529	1	0	0	0	0	1	0	0	0	1974	214	8	5	1457	5	C1R	12	7242701	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	64812	7242701	126609194	61	30763											
ATP2B1	490	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	90003742	90003742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	90003742	A	T	90003742	3	4	529	1	0	0	0	0	1	0	0	0	1139	420	15	5	1434	5	ATP2B1	12	90003742	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	82761041	90003742	43848153	62	30764											
CHPT1	56994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	102120124	102120124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	102120124	T	A	102120124	3	1	529	1	0	0	0	0	1	0	0	0	3372	1493	52	5	1148	5	CHPT1	12	102120124	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10	12116382	102120124	31731771	63	30765											
SRRM4	84530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	119552153	119552153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	119552153	C	T	119552153	3	4	529	1	0	0	0	0	1	0	0	0	15183	875	31	1	359	1	SRRM4	12	119552153	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	17432029	119552153	14299742	64	30766											
SBNO1	55206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123812074	123812074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	G	123812074	A	G	123812074	3	3	529	1	0	0	0	0	1	0	0	0	13875	391	14	3	2670	3	SBNO1	12	123812074	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	4259921	123812074	10039821	65	30767											
DHX37	57647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	125435351	125435351	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	125435351	C	T	125435351	5	4	529	1	0	0	0	0	0	0	1	0	4512	927	32	2	629	2	DHX37	12	125435351	Splice_Site	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	1623277	125435351	8416544	66	30768											
SPRY2	10253	broad.mit.edu	37	13	80911818	80911818	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	80911818	T	T	80911818	3	4	529	1	0	0	0	0	1	0	0	0	15118	739	26	2	928	2	SPRY2	13	80911818	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10		80911818	34258060	67	30769											
ATP6V1D	51382	hgsc.bcm.edu;ucsc.edu	37	14	67819728	67819728	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	-	67819728	T	-	67819728	7	5	529	1	0	1	0	1	0	0	0	0	1182	1609	56	0	704	0	ATP6V1D	14	67819728	Frame_Shift_Del	DEL	T	TCGA-CJ-5679-01A-11D-1534-10		67819728	39529812	68	30770											
SNW1	22938	hgsc.bcm.edu;ucsc.edu	37	14	78184785	78184797	+	Frame_Shift_Del	DEL	CTCTGGGCCATAT	CTCTGGGCCATAT	-	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	CTCTGGGCCATAT	CTCTGGGCCATAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	-	78184797	CTCTGGGCCATAT	-	78184785	7	5	529	1	0	1	0	1	0	0	0	0	14892	565	20	0	281	0	SNW1	14	78184785	Frame_Shift_Del	DEL	CTCTGGGCCATAT	TCGA-CJ-5679-01A-11D-1534-10	10365057	78184785	29164755	69	30771											
SECISBP2L	9728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49301479	49301479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	49301479	C	A	49301479	3	1	529	1	0	0	0	0	1	0	0	0	14020	565	20	4	1364	4	SECISBP2L	15	49301479	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10		49301479	53229913	70	30772											
HEXA	3073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	72640389	72640389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	72640389	G	A	72640389	3	1	529	1	0	0	0	0	1	0	0	0	7080	1159	40	1	540	1	HEXA	15	72640389	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	23338910	72640389	29891003	71	30773											
MKL2	57496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	14334311	14334311	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	14334311	A	T	14334311	3	4	529	1	0	0	0	0	1	0	0	0	9609	43	2	5	1079	5	MKL2	16	14334311	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10		14334311	76020442	72	30774											
PDILT	204474	hgsc.bcm.edu;ucsc.edu	37	16	20384428	20384428	+	Missense_Mutation	SNP	C	C	T	rs141043720	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	20384428	C	T	20384428	3	4	529	1	0	0	0	0	1	0	0	0	11681	768	27	1	1084	1	PDILT	16	20384428	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	6050117	20384428	69970325	73	30775											
ZP2	7783	hgsc.bcm.edu	37	16	21208874	21208875	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	21208875	-	C	21208874	7	5	529	1	0	1	1	0	0	0	0	0	18228	1203	42	0	76	0	ZP2	16	21208874	Frame_Shift_Ins	INS	-	TCGA-CJ-5679-01A-11D-1534-10	824446	21208874	69145879	74	30776											
SLC5A11	115584	broad.mit.edu;hgsc.bcm.edu	37	16	24921753	24921753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	24921753	G	A	24921753	3	1	529	1	0	0	0	0	1	0	0	0	14676	1145	40	1	1831	1	SLC5A11	16	24921753	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	3712879	24921753	65433000	75	30777											
SULT1A1	6817	broad.mit.edu	37	16	28620121	28620121	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	28620121	A	A	28620121	3	1	529	1	0	0	0	0	1	0	0	0	15384	1116	39	1	859	1	SULT1A1	16	28620121	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	3698368	28620121	61734632	76	30778											
SRCAP	10847	broad.mit.edu;hgsc.bcm.edu	37	16	30734026	30734026	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	30734026	C	T	30734026	2	4	529	1	0	0	0	0	0	0	0	1	15147	610	22	2		2	SRCAP	16	30734026	Silent	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	2113905	30734026	59620727	77	30779											
CNGB1	1258	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57991272	57991272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	57991272	A	T	57991272	3	4	529	1	0	0	0	0	1	0	0	0	3602	304	11	5	3026	5	CNGB1	16	57991272	Missense_Mutation	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	27257246	57991272	32363481	78	30780											
KIF1C	10749	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4923903	4923903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	4923903	G	A	4923903	3	1	529	1	0	0	0	0	1	0	0	0	8292	1058	37	1	1937	1	KIF1C	17	4923903	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10		4923903	76271307	79	30781											
GAS7	8522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	9873005	9873005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	9873005	C	T	9873005	3	4	529	1	0	0	0	0	1	0	0	0	6257	652	23	1	1065	1	GAS7	17	9873005	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	4949102	9873005	71322205	80	30782											
CCDC144A	9720	broad.mit.edu	37	17	16596346	16596346	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	16596346	T	T	16596346	3	4	529	1	0	0	0	0	1	0	0	0	2779	681	24	2	404	2	CCDC144A	17	16596346	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	6723341	16596346	64598864	81	30783											
MYO18A	399687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27417116	27417116	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	27417116	G	C	27417116	3	2	529	1	0	0	0	0	1	0	0	0	10072	985	34	4	799	4	MYO18A	17	27417116	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	10820770	27417116	53778094	82	30784											
DNAH17	8632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76450661	76450661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	76450661	C	T	76450661	3	4	529	1	0	0	0	0	1	0	0	0	4603	623	22	2	3163	2	DNAH17	17	76450661	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	49033545	76450661	4744549	83	30785											
SHD	56961	broad.mit.edu;hgsc.bcm.edu	37	19	4280225	4280225	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	4280225	G	A	4280225	2	1	529	1	0	0	0	0	0	0	0	1	14288	1103	39	1		1	SHD	19	4280225	Silent	SNP	G	TCGA-CJ-5679-01A-11D-1534-10		4280225	54848758	84	30786											
DPP9	91039	broad.mit.edu;ucsc.edu	37	19	4719861	4719861	+	Splice_Site	SNP	A	T	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	4719861	T	T	4719861	5	4	529	1	0	0	0	0	0	0	1	0	4735	173	6	5	2700	5	DPP9	19	4719861	Splice_Site	SNP	A	TCGA-CJ-5679-01A-11D-1534-10	439636	4719861	54409122	85	30787											
C19orf39	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11486488	11486489	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	-	11486489	TC	-	11486488	7	5	529	1	0	1	0	1	0	0	0	0	1924	1780	62	0	492	0	C19orf39	19	11486488	Frame_Shift_Del	DEL	TC	TCGA-CJ-5679-01A-11D-1534-10	6766627	11486488	47642495	86	30788											
ZNF226	7769	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44680985	44680985	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	C	44680985	G	C	44680985	3	2	529	1	0	0	0	0	1	0	0	0	17792	1261	44	4	1638	4	ZNF226	19	44680985	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	33194497	44680985	14447998	87	30789											
ZNF610	162963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52869427	52869427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	52869427	G	A	52869427	3	1	529	1	0	0	0	0	1	0	0	0	18048	1290	45	2	810	2	ZNF610	19	52869427	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	8188442	52869427	6259556	88	30790											
NRIP1	8204	hgsc.bcm.edu	37	21	16338707	16338707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	16338707	T	A	16338707	3	1	529	1	0	0	0	0	1	0	0	0	10659	1638	57	5	1673	5	NRIP1	21	16338707	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11D-1534-10		16338707	31791188	89	30791											
USP25	29761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	17205757	17205757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	17205757	G	A	17205757	3	1	529	1	0	0	0	0	1	0	0	0	17068	1058	37	1	2150	1	USP25	21	17205757	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	867050	17205757	30924138	90	30792											
MTMR3	8897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30418102	30418102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	30418102	G	A	30418102	3	1	529	1	0	0	0	0	1	0	0	0	9952	1175	41	2	3372	2	MTMR3	22	30418102	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10		30418102	20886464	91	30793											
EIF3L	51386	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	38270461	38270461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	38270461	G	A	38270461	3	1	529	1	0	0	0	0	1	0	0	0	5024	1087	38	1	870	1	EIF3L	22	38270461	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	7852359	38270461	13034105	92	30794											
SREBF2	6721	broad.mit.edu	37	22	42276853	42276853	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	42276853	A	A	42276853	3	1	529	1	0	0	0	0	1	0	0	0	15154	1087	38	1	1933	1	SREBF2	22	42276853	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	4006392	42276853	9027713	93	30795											
SYTL5	94122	broad.mit.edu;hgsc.bcm.edu	37	X	37935825	37935825	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	-	37935825	T	-	37935825	7	5	529	1	0	1	0	1	0	0	0	0	15498	1609	56	0	578	0	SYTL5	23	37935825	Frame_Shift_Del	DEL	T	TCGA-CJ-5679-01A-11D-1534-10		37935825	117334735	94	30796											
TSPYL2	64061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53115408	53115408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	53115408	G	T	53115408	3	4	529	1	0	0	0	0	1	0	0	0	16672	942	33	4	1856	4	TSPYL2	23	53115408	Missense_Mutation	SNP	G	TCGA-CJ-5679-01A-11D-1534-10	15179583	53115408	102155152	95	30797											
XPNPEP2	7512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	128886138	128886138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	A	128886138	C	A	128886138	3	1	529	1	0	0	0	0	1	0	0	0	17455	477	17	4	872	4	XPNPEP2	23	128886138	Missense_Mutation	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	75770730	128886138	26384422	96	30798											
CD40LG	959	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135730560	135730560	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5679-01A-11D-1534-10	TCGA-CJ-5679-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84120a7c-4be0-4025-a95a-f78bfb58d28f	4c1ae2ec-1dbf-4c5a-88f2-9995df35736e	T	135730560	C	T	135730560	2	4	529	1	0	0	0	0	0	0	0	1	3018	477	17	2		2	CD40LG	23	135730560	Silent	SNP	C	TCGA-CJ-5679-01A-11D-1534-10	6844422	135730560	19540000	97	30799											
VHL	7428	hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	C	rs5030807	bycluster	TCGA-CJ-5679-01A-11W-1584-10	TCGA-CJ-5679-11A-01W-1585-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	de904324-2c23-4a2c-b5bf-56e2e6f616ef	20ed414c-6f1f-4d6a-a731-e28d3d45efc3	C	10183797	T	C	10183797	3	2	530	1	0	0	0	0	1	0	0	0	17174	1551	54	3	268	3	VHL	3	10183797	Missense_Mutation	SNP	T	TCGA-CJ-5679-01A-11W-1584-10		10183797	187838633	1	30800											
FAM54B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26152903	26152903	+	Splice_Site	SNP	G	G	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	26152903	G	T	26152903	5	4	531	1	0	0	0	0	0	0	1	0	5590	1275	44	4	250	4	FAM54B	1	26152903	Splice_Site	SNP	G	TCGA-CJ-5680-01A-11D-1534-10		26152903	223097718	1	30801											
MCOLN3	55283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	85511028	85511028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	85511028	C	A	85511028	3	1	531	1	0	0	0	0	1	0	0	0	9404	507	18	4	1693	4	MCOLN3	1	85511028	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	59358125	85511028	163739593	2	30802											
RFX5	5993	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151315361	151315361	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	151315361	G	T	151315361	2	4	531	1	0	0	0	0	0	0	0	1	13279	932	33	4		4	RFX5	1	151315361	Silent	SNP	G	TCGA-CJ-5680-01A-11D-1534-10	65804333	151315361	97935260	3	30803											
SHC1	6464	broad.mit.edu	37	1	154938670	154938670	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	154938670	T	T	154938670	3	4	531	1	0	0	0	0	1	0	0	0	14283	768	27	1	550	1	SHC1	1	154938670	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	3623309	154938670	94311951	4	30804											
KIRREL	55243	broad.mit.edu	37	1	158059420	158059420	+	Splice_Site	SNP	T	G	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	158059420	G	G	158059420	5	3	531	1	0	0	0	0	0	0	1	0	8331	1710	59	5	1207	5	KIRREL	1	158059420	Splice_Site	SNP	T	TCGA-CJ-5680-01A-11D-1534-10	3120750	158059420	91191201	5	30805											
PAPPA2	60676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	176640128	176640128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	176640128	C	A	176640128	3	1	531	1	0	0	0	0	1	0	0	0	11440	796	28	4	2024	4	PAPPA2	1	176640128	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	18580708	176640128	72610493	6	30806											
SPATA17	128153	hgsc.bcm.edu;ucsc.edu	37	1	218036142	218036142	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	218036142	T	G	218036142	3	3	531	1	0	0	0	0	1	0	0	0	15014	1809	63	5	1070	5	SPATA17	1	218036142	Missense_Mutation	SNP	T	TCGA-CJ-5680-01A-11D-1534-10	41396014	218036142	31214479	7	30807											
RYR2	6262	hgsc.bcm.edu;ucsc.edu	37	1	237538046	237538046	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	C	237538046	T	C	237538046	2	2	531	1	0	0	0	0	0	0	0	1	13782	1596	56	3		3	RYR2	1	237538046	Silent	SNP	T	TCGA-CJ-5680-01A-11D-1534-10	19501904	237538046	11712575	8	30808											
ABCG8	64241	broad.mit.edu;hgsc.bcm.edu	37	2	44079623	44079623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	44079623	C	T	44079623	3	4	531	1	0	0	0	0	1	0	0	0	72	594	21	2	710	2	ABCG8	2	44079623	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10		44079623	199119750	9	30809											
ITPRIPL1	150771	broad.mit.edu;ucsc.edu	37	2	96993737	96993737	+	Silent	SNP	C	G	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	96993737	G	G	96993737	2	3	531	1	0	0	0	0	0	0	0	1	7931	900	32	4		4	ITPRIPL1	2	96993737	Silent	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	52914114	96993737	146205636	10	30810											
CCNT2	905	hgsc.bcm.edu;ucsc.edu	37	2	135712132	135712132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	C	135712132	T	C	135712132	3	2	531	1	0	0	0	0	1	0	0	0	2937	1638	57	3	2141	3	CCNT2	2	135712132	Missense_Mutation	SNP	T	TCGA-CJ-5680-01A-11D-1534-10	38718395	135712132	107487241	11	30811											
SLC39A10	57181	hgsc.bcm.edu;ucsc.edu	37	2	196548615	196548615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	196548615	A	G	196548615	3	3	531	1	0	0	0	0	1	0	0	0	14626	14	1	3	1207	3	SLC39A10	2	196548615	Missense_Mutation	SNP	A	TCGA-CJ-5680-01A-11D-1534-10	60836483	196548615	46650758	12	30812											
CPS1	1373	hgsc.bcm.edu;ucsc.edu	37	2	211521332	211521332	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	211521332	C	A	211521332	2	1	531	1	0	0	0	0	0	0	0	1	3825	581	21	4		4	CPS1	2	211521332	Silent	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	14972717	211521332	31678041	13	30813											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191543	10191546	+	Frame_Shift_Del	DEL	ACAT	ACAT	-	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	ACAT	ACAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	-	10191546	ACAT	-	10191543	7	5	531	1	0	1	0	1	0	0	0	0	17174	275	10	0	546	0	VHL	3	10191543	Frame_Shift_Del	DEL	ACAT	TCGA-CJ-5680-01A-11D-1534-10		10191543	187830887	14	30814											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52442523	52442523	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	-	52442523	A	-	52442523	7	5	531	1	0	1	0	1	0	0	0	0	1311	214	8	0	2023	0	BAP1	3	52442523	Frame_Shift_Del	DEL	A	TCGA-CJ-5680-01A-11D-1534-10	42250980	52442523	145579907	15	30815											
CEP97	79598	hgsc.bcm.edu;ucsc.edu	37	3	101476949	101476949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	101476949	G	A	101476949	3	1	531	1	0	0	0	0	1	0	0	0	3265	1029	36	2	1533	2	CEP97	3	101476949	Missense_Mutation	SNP	G	TCGA-CJ-5680-01A-11D-1534-10	49034426	101476949	96545481	16	30816											
MME	4311	hgsc.bcm.edu;ucsc.edu	37	3	154858058	154858058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	C	154858058	T	C	154858058	3	2	531	1	0	0	0	0	1	0	0	0	9652	1609	56	3	968	3	MME	3	154858058	Missense_Mutation	SNP	T	TCGA-CJ-5680-01A-11D-1534-10	53381109	154858058	43164372	17	30817											
CWC27	10283	hgsc.bcm.edu;ucsc.edu	37	5	64314067	64314067	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	64314067	C	A	64314067	2	1	531	1	0	0	0	0	0	0	0	1	4072	903	32	4		4	CWC27	5	64314067	Silent	SNP	C	TCGA-CJ-5680-01A-11D-1534-10		64314067	116601193	18	30818											
CSF1R	1436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149449521	149449521	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	149449521	C	G	149449521	3	3	531	1	0	0	0	0	1	0	0	0	3934	912	32	4	1545	4	CSF1R	5	149449521	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	85135454	149449521	31465739	19	30819											
RANBP17	64901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	170380686	170380686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	170380686	G	T	170380686	3	4	531	1	0	0	0	0	1	0	0	0	13040	1348	47	4	1604	4	RANBP17	5	170380686	Missense_Mutation	SNP	G	TCGA-CJ-5680-01A-11D-1534-10	20931165	170380686	10534574	20	30820											
NPY	4852	broad.mit.edu;ucsc.edu	37	7	24324865	24324865	+	Silent	SNP	A	G	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	24324865	G	G	24324865	2	3	531	1	0	0	0	0	0	0	0	1	10614	407	15	3		3	NPY	7	24324865	Silent	SNP	A	TCGA-CJ-5680-01A-11D-1534-10		24324865	134813798	21	30821											
C7orf10	79783	hgsc.bcm.edu	37	7	40535918	40535918	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	-	40535918	T	-	40535918	7	5	531	1	0	1	0	1	0	0	0	0	2378	1609	56	0	978	0	C7orf10	7	40535918	Frame_Shift_Del	DEL	T	TCGA-CJ-5680-01A-11D-1534-10	16211053	40535918	118602745	22	30822											
GIMAP2	26157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150389838	150389838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	150389838	C	A	150389838	3	1	531	1	0	0	0	0	1	0	0	0	6387	855	30	4	470	4	GIMAP2	7	150389838	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	109853920	150389838	8748825	23	30823											
MTSS1	9788	broad.mit.edu;ucsc.edu	37	8	125568483	125568483	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	125568483	A	A	125568483	3	1	531	1	0	0	0	0	1	0	0	0	9969	971	34	2	885	2	MTSS1	8	125568483	Missense_Mutation	SNP	G	TCGA-CJ-5680-01A-11D-1534-10		125568483	20795539	24	30824											
CBWD3	445571	broad.mit.edu	37	9	70871861	70871861	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	70871861	G	G	70871861	3	3	531	1	0	0	0	0	1	0	0	0	2716	1725	60	5	1721	5	CBWD3	9	70871861	Missense_Mutation	SNP	T	TCGA-CJ-5680-01A-11D-1534-10		70871861	70341570	25	30825											
WDR5	11091	hgsc.bcm.edu;ucsc.edu	37	9	137006663	137006663	+	Silent	SNP	G	G	A	rs142853576	bycluster;by1000genomes	TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	137006663	G	A	137006663	2	1	531	1	0	0	0	0	0	0	0	1	17315	1132	40	1		1	WDR5	9	137006663	Silent	SNP	G	TCGA-CJ-5680-01A-11D-1534-10	66134802	137006663	4206768	26	30826											
SUPV3L1	6832	broad.mit.edu;ucsc.edu	37	10	70954975	70954975	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	70954975	A	A	70954975	3	1	531	1	0	0	0	0	1	0	0	0	15414	1290	45	2	911	2	SUPV3L1	10	70954975	Missense_Mutation	SNP	G	TCGA-CJ-5680-01A-11D-1534-10		70954975	64579772	27	30827											
KIF20B	9585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	91497461	91497461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	91497461	C	A	91497461	3	1	531	1	0	0	0	0	1	0	0	0	8294	827	29	4	2817	4	KIF20B	10	91497461	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	20542486	91497461	44037286	28	30828											
PAX6	5080	broad.mit.edu;hgsc.bcm.edu	37	11	31816305	31816305	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	31816305	C	T	31816305	2	4	531	1	0	0	0	0	0	0	0	1	11490	912	32	2		2	PAX6	11	31816305	Silent	SNP	C	TCGA-CJ-5680-01A-11D-1534-10		31816305	103190211	29	30829											
OR4C6	219432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55433031	55433031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	55433031	A	G	55433031	3	3	531	1	0	0	0	0	1	0	0	0	11059	391	14	3	391	3	OR4C6	11	55433031	Missense_Mutation	SNP	A	TCGA-CJ-5680-01A-11D-1534-10	23616726	55433031	79573485	30	30830											
MPEG1	219972	hgsc.bcm.edu;ucsc.edu	37	11	58978851	58978851	+	Silent	SNP	T	T	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	58978851	T	A	58978851	2	1	531	1	0	0	0	0	0	0	0	1	9730	1451	51	5		5	MPEG1	11	58978851	Silent	SNP	T	TCGA-CJ-5680-01A-11D-1534-10	3545820	58978851	76027665	31	30831											
ODZ4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	78516425	78516425	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	78516425	T	G	78516425	3	3	531	1	0	0	0	0	1	0	0	0	10844	1519	53	5	6298	5	ODZ4	11	78516425	Missense_Mutation	SNP	T	TCGA-CJ-5680-01A-11D-1534-10	19537574	78516425	56490091	32	30832											
ERGIC2	51290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	29509405	29509405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	29509405	T	G	29509405	3	3	531	1	0	0	0	0	1	0	0	0	5226	1435	50	5	679	5	ERGIC2	12	29509405	Missense_Mutation	SNP	T	TCGA-CJ-5680-01A-11D-1534-10		29509405	104342490	33	30833											
C12orf35	0	broad.mit.edu;ucsc.edu	37	12	32138193	32138193	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	32138193	T	T	32138193	3	4	531	1	0	0	0	0	1	0	0	0	1684	768	27	1	4306	1	C12orf35	12	32138193	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	2628788	32138193	101713702	34	30834											
PAN2	9924	broad.mit.edu;ucsc.edu	37	12	56720186	56720186	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	C	56720186	C	C	56720186	3	2	531	1	0	0	0	0	1	0	0	0	11421	1261	44	4	2414	4	PAN2	12	56720186	Missense_Mutation	SNP	G	TCGA-CJ-5680-01A-11D-1534-10	24581993	56720186	77131709	35	30835											
LEMD3	23592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	65564430	65564430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	65564430	A	T	65564430	3	4	531	1	0	0	0	0	1	0	0	0	8728	188	7	5	1056	5	LEMD3	12	65564430	Missense_Mutation	SNP	A	TCGA-CJ-5680-01A-11D-1534-10	8844244	65564430	68287465	36	30836											
RIMBP2	23504	broad.mit.edu;ucsc.edu	37	12	130926444	130926444	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	130926444	T	T	130926444	3	4	531	1	0	0	0	0	1	0	0	0	13376	864	30	2	1804	2	RIMBP2	12	130926444	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	65362014	130926444	2925451	37	30837											
ATP11A	23250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	113481084	113481084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	113481084	C	A	113481084	3	1	531	1	0	0	0	0	1	0	0	0	1119	536	19	4	1146	4	ATP11A	13	113481084	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10		113481084	1688794	38	30838											
ARID4A	5926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58830901	58830901	+	Silent	SNP	T	T	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	58830901	T	A	58830901	2	1	531	1	0	0	0	0	0	0	0	1	919	1567	55	5		5	ARID4A	14	58830901	Silent	SNP	T	TCGA-CJ-5680-01A-11D-1534-10		58830901	48518639	39	30839											
HERC2	8924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	28473477	28473477	+	Missense_Mutation	SNP	C	C	A	rs149550128	alternate_allele	TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	28473477	C	A	28473477	3	1	531	1	0	0	0	0	1	0	0	0	7065	768	27	4	9389	4	HERC2	15	28473477	Missense_Mutation	SNP	C	TCGA-CJ-5680-01A-11D-1534-10		28473477	74057915	40	30840											
CDAN1	146059	broad.mit.edu	37	15	43026473	43026473	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	43026473	T	T	43026473	3	4	531	1	0	0	0	0	1	0	0	0	3056	1348	47	4	2563	4	CDAN1	15	43026473	Missense_Mutation	SNP	G	TCGA-CJ-5680-01A-11D-1534-10	14552996	43026473	59504919	41	30841											
MVP	9961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	29858602	29858602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	29858602	G	A	29858602	3	1	531	1	0	0	0	0	1	0	0	0	10003	1203	42	2	2400	2	MVP	16	29858602	Missense_Mutation	SNP	G	TCGA-CJ-5680-01A-11D-1534-10		29858602	60496151	42	30842											
KIAA0802	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	8793068	8793068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	C	8793068	G	C	8793068	3	2	531	1	0	0	0	0	1	0	0	0	8201	1203	42	4	1982	4	KIAA0802	18	8793068	Missense_Mutation	SNP	G	TCGA-CJ-5680-01A-11D-1534-10		8793068	69284180	43	30843											
TYK2	7297	broad.mit.edu	37	19	10473019	10473019	+	Silent	SNP	C	A	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	10473019	A	A	10473019	2	1	531	1	0	0	0	0	0	0	0	1	16822	610	22	4		4	TYK2	19	10473019	Silent	SNP	C	TCGA-CJ-5680-01A-11D-1534-10		10473019	48655964	44	30844											
DMKN	93099	hgsc.bcm.edu;ucsc.edu	37	19	36003991	36003991	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	36003991	G	A	36003991	2	1	531	1	0	0	0	0	0	0	0	1	4584	1074	38	1		1	DMKN	19	36003991	Silent	SNP	G	TCGA-CJ-5680-01A-11D-1534-10	25530972	36003991	23124992	45	30845											
BCAM	4059	broad.mit.edu	37	19	45317871	45317871	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	G	45317871	G	G	45317871	3	3	531	1	0	0	0	0	1	0	0	0	1344	304	11	3	962	3	BCAM	19	45317871	Missense_Mutation	SNP	A	TCGA-CJ-5680-01A-11D-1534-10	9313880	45317871	13811112	46	30846											
MED25	81857	broad.mit.edu;hgsc.bcm.edu	37	19	50338353	50338353	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	50338353	C	T	50338353	2	4	531	1	0	0	0	0	0	0	0	1	9450	767	27	1		1	MED25	19	50338353	Silent	SNP	C	TCGA-CJ-5680-01A-11D-1534-10	5020482	50338353	8790630	47	30847											
ZNF677	342926	hgsc.bcm.edu;ucsc.edu	37	19	53740495	53740495	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	53740495	G	A	53740495	2	1	531	1	0	0	0	0	0	0	0	1	18096	987	35	2		2	ZNF677	19	53740495	Silent	SNP	G	TCGA-CJ-5680-01A-11D-1534-10	3402142	53740495	5388488	48	30848											
CLTCL1	8218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	19175075	19175075	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	19175075	A	T	19175075	3	4	531	1	0	0	0	0	1	0	0	0	3569	420	15	5	338	5	CLTCL1	22	19175075	Missense_Mutation	SNP	A	TCGA-CJ-5680-01A-11D-1534-10		19175075	32129491	49	30849											
GGT5	2687	broad.mit.edu;ucsc.edu	37	22	24627459	24627459	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	24627459	A	A	24627459	3	1	531	1	0	0	0	0	1	0	0	0	6369	1232	43	2	997	2	GGT5	22	24627459	Missense_Mutation	SNP	G	TCGA-CJ-5680-01A-11D-1534-10	5452384	24627459	26677107	50	30850											
MOSPD2	158747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	14891810	14891810	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	A	14891810	G	A	14891810	5	1	531	1	0	0	0	0	0	0	1	0	9723	956	33	2	15	2	MOSPD2	23	14891810	Splice_Site	SNP	G	TCGA-CJ-5680-01A-11D-1534-10		14891810	140378750	51	30851											
MAGEB3	4114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	30254277	30254277	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5680-01A-11D-1534-10	TCGA-CJ-5680-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c718814-9d25-49a6-a430-2019071ec0ab	ef7a85b0-807b-4c98-9c63-856a0079d1fd	T	30254277	A	T	30254277	3	4	531	1	0	0	0	0	1	0	0	0	9184	391	14	5	238	5	MAGEB3	23	30254277	Missense_Mutation	SNP	A	TCGA-CJ-5680-01A-11D-1534-10	15362467	30254277	125016283	52	30852											
NBPF10	100132406	broad.mit.edu	37	1	146398399	146398399	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	A	146398399	A	A	146398399	3	1	532	1	0	0	0	0	1	0	0	0	10200	1218	42	2		2	NBPF10	1	146398399	Missense_Mutation	SNP	G	TCGA-CJ-5681-01A-11D-1534-10		146398399	102852222	1	30853											
PGLYRP3	114771	broad.mit.edu;ucsc.edu	37	1	153275057	153275057	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	A	153275057	A	A	153275057	3	1	532	1	0	0	0	0	1	0	0	0	11802	710	25	4	481	4	PGLYRP3	1	153275057	Missense_Mutation	SNP	C	TCGA-CJ-5681-01A-11D-1534-10	6876658	153275057	95975564	2	30854											
GLI2	2736	hgsc.bcm.edu;ucsc.edu	37	2	121685023	121685026	+	Frame_Shift_Del	DEL	TCTG	TCTG	-	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	TCTG	TCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	-	121685026	TCTG	-	121685023	7	5	532	1	0	1	0	1	0	0	0	0	6445	1783	62	0	241	0	GLI2	2	121685023	Frame_Shift_Del	DEL	TCTG	TCGA-CJ-5681-01A-11D-1534-10		121685023	121514350	3	30855											
CRYGA	1418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	209025594	209025594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	G	209025594	C	G	209025594	3	3	532	1	0	0	0	0	1	0	0	0	3916	506	18	4	69	4	CRYGA	2	209025594	Missense_Mutation	SNP	C	TCGA-CJ-5681-01A-11D-1534-10	87340571	209025594	34173779	4	30856											
NPRL2	10641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	50386816	50386816	+	Splice_Site	SNP	C	C	G	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	G	50386816	C	G	50386816	5	3	532	1	0	0	0	0	0	0	1	0	10604	521	18	4	725	4	NPRL2	3	50386816	Splice_Site	SNP	C	TCGA-CJ-5681-01A-11D-1534-10		50386816	147635614	5	30857											
MUC4	4585	broad.mit.edu	37	3	195506555	195506555	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	195506555	T	T	195506555	3	4	532	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195506555	Missense_Mutation	SNP	C	TCGA-CJ-5681-01A-11D-1534-10	145119739	195506555	2515875	6	30858			1	62		3	3	2840	N	T_GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC_C	4.296229e-06
MUC4	4585	hgsc.bcm.edu	37	3	195509031	195509078	+	In_Frame_Del	DEL	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	-	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	-	195509078	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	-	195509031	7	5	532	1	0	1	0	1	0	0	0	0	9985	1335	47	0		0	MUC4	3	195509031	In_Frame_Del	DEL	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	TCGA-CJ-5681-01A-11D-1534-10	2476	195509031	2513399	7	30859			1	62		3	3	2840	N	T_GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC_C	4.296229e-06
MUC4	4585	broad.mit.edu	37	3	195509394	195509394	+	Silent	SNP	T	G	G	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	G	195509394	G	G	195509394	2	3	532	1	0	0	0	0	0	0	0	1	9985	1567	55	5		5	MUC4	3	195509394	Silent	SNP	T	TCGA-CJ-5681-01A-11D-1534-10	363	195509394	2513036	8	30860			1	62		3	3	2840	N	T_GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC_C	4.296229e-06
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56481876	56481876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	C	56481876	T	C	56481876	3	2	532	1	0	0	0	0	1	0	0	0	4785	1725	60	3	14010	3	DST	6	56481876	Missense_Mutation	SNP	T	TCGA-CJ-5681-01A-11D-1534-10		56481876	114633191	9	30861											
SOBP	55084	broad.mit.edu;ucsc.edu	37	6	107811866	107811866	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	G	107811866	G	G	107811866	3	3	532	1	0	0	0	0	1	0	0	0	14925	304	11	3	48	3	SOBP	6	107811866	Missense_Mutation	SNP	A	TCGA-CJ-5681-01A-11D-1534-10	51329990	107811866	63303201	10	30862											
SEMA3A	10371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	83640554	83640554	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	G	83640554	A	G	83640554	2	3	532	1	0	0	0	0	0	0	0	1	14037	262	10	3		3	SEMA3A	7	83640554	Silent	SNP	A	TCGA-CJ-5681-01A-11D-1534-10		83640554	75498109	11	30863											
PLOD3	8985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100860059	100860059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	100860059	G	T	100860059	3	4	532	1	0	0	0	0	1	0	0	0	12110	962	34	4	2170	4	PLOD3	7	100860059	Missense_Mutation	SNP	G	TCGA-CJ-5681-01A-11D-1534-10	17219505	100860059	58278604	12	30864	373	2									
PLOD3	8985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100860060	100860060	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	A	100860060	C	A	100860060	2	1	532	1	0	0	0	0	0	0	0	1	12110	697	25	4		4	PLOD3	7	100860060	Silent	SNP	C	TCGA-CJ-5681-01A-11D-1534-10	1	100860060	58278603	13	30865	373	2									
FAM71F2	346653	broad.mit.edu;ucsc.edu	37	7	128323136	128323136	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	A	128323136	A	A	128323136	3	1	532	1	0	0	0	0	1	0	0	0	5620	1175	41	2	871	2	FAM71F2	7	128323136	Missense_Mutation	SNP	G	TCGA-CJ-5681-01A-11D-1534-10	27463076	128323136	30815527	14	30866											
CHD7	55636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	61754584	61754584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	A	61754584	G	A	61754584	3	1	532	1	0	0	0	0	1	0	0	0	3332	1000	35	2	4901	2	CHD7	8	61754584	Missense_Mutation	SNP	G	TCGA-CJ-5681-01A-11D-1534-10		61754584	84609438	15	30867											
KIF27	55582	broad.mit.edu;hgsc.bcm.edu	37	9	86474157	86474157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	A	86474157	C	A	86474157	3	1	532	1	0	0	0	0	1	0	0	0	8303	565	20	4	1161	4	KIF27	9	86474157	Missense_Mutation	SNP	C	TCGA-CJ-5681-01A-11D-1534-10		86474157	54739274	16	30868											
SLC16A9	220963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61432539	61432539	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	G	61432539	C	G	61432539	3	3	532	1	0	0	0	0	1	0	0	0	14428	739	26	4	1216	4	SLC16A9	10	61432539	Missense_Mutation	SNP	C	TCGA-CJ-5681-01A-11D-1534-10		61432539	74102208	17	30869											
OR5W2	390148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55681849	55681849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	55681849	A	T	55681849	3	4	532	1	0	0	0	0	1	0	0	0	11192	330	12	5	724	5	OR5W2	11	55681849	Missense_Mutation	SNP	A	TCGA-CJ-5681-01A-11D-1534-10		55681849	79324667	18	30870											
IGFBP6	3489	broad.mit.edu	37	12	53491636	53491638	+	In_Frame_Del	DEL	GGA	-	-	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	-	53491638	-	-	53491636	7	5	532	1	0	1	0	1	0	0	0	0	7590	1335	47	0	137	0	IGFBP6	12	53491636	In_Frame_Del	DEL	GGA	TCGA-CJ-5681-01A-11D-1534-10		53491636	80360259	19	30871											
MSI1	4440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	120791103	120791103	+	Silent	SNP	G	G	A	rs140182426		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	A	120791103	G	A	120791103	2	1	532	1	0	0	0	0	0	0	0	1	9882	1130	39	1		1	MSI1	12	120791103	Silent	SNP	G	TCGA-CJ-5681-01A-11D-1534-10	67299467	120791103	13060792	20	30872											
NIPA2	81614	hgsc.bcm.edu	37	15	23006304	23006304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	C	23006304	T	C	23006304	3	2	532	1	0	0	0	0	1	0	0	0	10430	1754	61	3	86	3	NIPA2	15	23006304	Missense_Mutation	SNP	T	TCGA-CJ-5681-01A-11D-1534-10		23006304	79525088	21	30873											
ZFHX3	463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	72831125	72831125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	A	72831125	C	A	72831125	3	1	532	1	0	0	0	0	1	0	0	0	17646	565	20	4	5663	4	ZFHX3	16	72831125	Missense_Mutation	SNP	C	TCGA-CJ-5681-01A-11D-1534-10		72831125	17523628	22	30874											
ZFHX3	463	hgsc.bcm.edu	37	16	72992581	72992581	+	Missense_Mutation	SNP	G	G	T	rs143031716	alternate_allele	TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	72992581	G	T	72992581	3	4	532	1	0	0	0	0	1	0	0	0	17646	1136	40	4	9683	4	ZFHX3	16	72992581	Missense_Mutation	SNP	G	TCGA-CJ-5681-01A-11D-1534-10	161456	72992581	17362172	23	30875											
ZCCHC14	23174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	87493617	87493621	+	Frame_Shift_Del	DEL	TGCTG	TGCTG	-	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	TGCTG	TGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	-	87493621	TGCTG	-	87493617	7	5	532	1	0	1	0	1	0	0	0	0	17595	1821	63	0	2617	0	ZCCHC14	16	87493617	Frame_Shift_Del	DEL	TGCTG	TCGA-CJ-5681-01A-11D-1534-10	14501036	87493617	2861136	24	30876											
SCPEP1	59342	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	55058513	55058513	+	Silent	SNP	C	C	G	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	G	55058513	C	G	55058513	2	3	532	1	0	0	0	0	0	0	0	1	13948	668	24	4		4	SCPEP1	17	55058513	Silent	SNP	C	TCGA-CJ-5681-01A-11D-1534-10		55058513	26136697	25	30877											
NPC1	4864	broad.mit.edu;ucsc.edu	37	18	21141440	21141440	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	21141440	T	T	21141440	3	4	532	1	0	0	0	0	1	0	0	0	10577	1203	42	4	3405	4	NPC1	18	21141440	Missense_Mutation	SNP	G	TCGA-CJ-5681-01A-11D-1534-10		21141440	56935808	26	30878	374	2									
NPC1	4864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	21141441	21141441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	21141441	C	T	21141441	3	4	532	1	0	0	0	0	1	0	0	0	10577	739	26	2	3406	2	NPC1	18	21141441	Missense_Mutation	SNP	C	TCGA-CJ-5681-01A-11D-1534-10	1	21141441	56935807	27	30879	374	2									
CCDC124	115098	broad.mit.edu	37	19	18054506	18054506	+	Silent	SNP	C	T	T	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	18054506	T	T	18054506	2	4	532	1	0	0	0	0	0	0	0	1	2762	668	24	2		2	CCDC124	19	18054506	Silent	SNP	C	TCGA-CJ-5681-01A-11D-1534-10		18054506	41074477	28	30880											
LILRB1	10859	broad.mit.edu;hgsc.bcm.edu	37	19	55143551	55143551	+	Missense_Mutation	SNP	G	G	A	rs112916853	byfrequency	TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	A	55143551	G	A	55143551	3	1	532	1	0	0	0	0	1	0	0	0	8797	1145	40	1	538	1	LILRB1	19	55143551	Missense_Mutation	SNP	G	TCGA-CJ-5681-01A-11D-1534-10	37089045	55143551	3985432	29	30881											
RBM39	9584	broad.mit.edu;ucsc.edu	37	20	34319917	34319917	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	34319917	T	T	34319917	3	4	532	1	0	0	0	0	1	0	0	0	13146	652	23	1	1406	1	RBM39	20	34319917	Missense_Mutation	SNP	C	TCGA-CJ-5681-01A-11D-1534-10		34319917	28705603	30	30882											
NEFH	4744	hgsc.bcm.edu	37	22	29885580	29885581	+	In_Frame_Ins	INS	-	-	AGGCCAAGTCCCCTGAGA	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	AGGCCAAGTCCCCTGAGA	29885581	-	AGGCCAAGTCCCCTGAGA	29885580	7	5	532	1	0	1	1	0	0	0	0	0	10321	247	9	0	1965	0	NEFH	22	29885580	In_Frame_Ins	INS	-	TCGA-CJ-5681-01A-11D-1534-10		29885580	21418986	31	30883											
RGAG1	57529	hgsc.bcm.edu	37	X	109696032	109696032	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	G	109696032	A	G	109696032	2	3	532	1	0	0	0	0	0	0	0	1	13287	291	11	3		3	RGAG1	23	109696032	Silent	SNP	A	TCGA-CJ-5681-01A-11D-1534-10		109696032	45574528	32	30884											
AFF2	2334	broad.mit.edu;ucsc.edu	37	X	148037884	148037884	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	148037884	T	T	148037884	3	4	532	1	0	0	0	0	1	0	0	0	357	855	30	2	2406	2	AFF2	23	148037884	Missense_Mutation	SNP	C	TCGA-CJ-5681-01A-11D-1534-10	38341852	148037884	7232676	33	30885											
ZNF185	7739	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	152086678	152086678	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5681-01A-11D-1534-10	TCGA-CJ-5681-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9ae0744a-9bc1-4cd7-b7cf-c6569ed9e4aa	18405e90-5663-4bf6-a93e-eb84613a8d4c	T	152086678	C	T	152086678	2	4	532	1	0	0	0	0	0	0	0	1	17764	581	21	2		2	ZNF185	23	152086678	Silent	SNP	C	TCGA-CJ-5681-01A-11D-1534-10	4048794	152086678	3183882	34	30886											
PTCHD2	57540	broad.mit.edu;hgsc.bcm.edu	37	1	11579864	11579864	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	11579864	C	T	11579864	2	4	533	1	0	0	0	0	0	0	0	1	12743	813	29	2		2	PTCHD2	1	11579864	Silent	SNP	C	TCGA-CJ-5682-01A-11D-1534-10		11579864	237670757	1	30887											
ZBTB40	9923	broad.mit.edu;ucsc.edu	37	1	22843894	22843894	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	22843894	G	G	22843894	3	3	533	1	0	0	0	0	1	0	0	0	17554	180	7	3	2816	3	ZBTB40	1	22843894	Missense_Mutation	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	11264030	22843894	226406727	2	30888											
CDC14A	8556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100964518	100964518	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	100964518	A	G	100964518	2	3	533	1	0	0	0	0	0	0	0	1	3058	407	15	3		3	CDC14A	1	100964518	Silent	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	78120624	100964518	148286103	3	30889											
ATP1A1	476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	116939249	116939249	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	116939249	C	G	116939249	3	3	533	1	0	0	0	0	1	0	0	0	1128	816	29	4	1936	4	ATP1A1	1	116939249	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	15974731	116939249	132311372	4	30890											
NBPF9	400818	broad.mit.edu	37	1	144220850	144220850	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	144220850	G	G	144220850	3	3	533	1	0	0	0	0	1	0	0	0	10206	1740	60	5		5	NBPF9	1	144220850	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	27281601	144220850	105029771	5	30891											
THEM5	284486	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151824751	151824751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	151824751	C	A	151824751	3	1	533	1	0	0	0	0	1	0	0	0	15871	855	30	4	455	4	THEM5	1	151824751	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	7603901	151824751	97425870	6	30892											
NOS1AP	9722	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	162324998	162324999	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	GG	162324999	-	GG	162324998	7	5	533	1	0	1	1	0	0	0	0	0	10549	304	11	0	643	0	NOS1AP	1	162324998	Frame_Shift_Ins	INS	-	TCGA-CJ-5682-01A-11D-1534-10	10500247	162324998	86925623	7	30893											
RYR2	6262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	237664189	237664189	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	237664189	C	G	237664189	3	3	533	1	0	0	0	0	1	0	0	0	13782	912	32	4	2464	4	RYR2	1	237664189	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	75339191	237664189	11586432	8	30894											
ALK	238	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	29455209	29455209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	29455209	A	G	29455209	3	3	533	1	0	0	0	0	1	0	0	0	525	304	11	3	2329	3	ALK	2	29455209	Missense_Mutation	SNP	A	TCGA-CJ-5682-01A-11D-1534-10		29455209	213744164	9	30895											
EPB41L5	57669	hgsc.bcm.edu;ucsc.edu	37	2	120847955	120847966	+	In_Frame_Del	DEL	ACTGGATCATCC	ACTGGATCATCC	-	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	ACTGGATCATCC	ACTGGATCATCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	-	120847966	ACTGGATCATCC	-	120847955	7	5	533	1	0	1	0	1	0	0	0	0	5159	272	10	0	948	0	EPB41L5	2	120847955	In_Frame_Del	DEL	ACTGGATCATCC	TCGA-CJ-5682-01A-11D-1534-10	91392746	120847955	122351418	10	30896											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179631234	179631234	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	179631234	G	A	179631234	4	1	533	1	0	0	0	0	0	1	0	0	16747	1153	40	1	101699	1	TTN	2	179631234	Nonsense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	58783279	179631234	63568139	11	30897											
DNPEP	23549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220239735	220239735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	220239735	C	A	220239735	3	1	533	1	0	0	0	0	1	0	0	0	4681	507	18	4	216	4	DNPEP	2	220239735	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	40608501	220239735	22959638	12	30898	375	2									
DNPEP	23549	broad.mit.edu;ucsc.edu	37	2	220239736	220239736	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	220239736	A	A	220239736	3	1	533	1	0	0	0	0	1	0	0	0	4681	594	21	4	217	4	DNPEP	2	220239736	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	1	220239736	22959637	13	30899	375	2									
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47098903	47098903	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	47098903	A	T	47098903	4	4	533	1	0	0	0	0	0	1	0	0	14144	131	5	5	1351	5	SETD2	3	47098903	Nonsense_Mutation	SNP	A	TCGA-CJ-5682-01A-11D-1534-10		47098903	150923527	14	30900											
TREX1	11277	broad.mit.edu;hgsc.bcm.edu	37	3	48508682	48508682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	48508682	T	C	48508682	3	2	533	1	0	0	0	0	1	0	0	0	16488	1696	59	3	795	3	TREX1	3	48508682	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	1409779	48508682	149513748	15	30901											
DNAH1	25981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52402795	52402795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	52402795	C	A	52402795	3	1	533	1	0	0	0	0	1	0	0	0	4599	739	26	4	5946	4	DNAH1	3	52402795	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	3894113	52402795	145619635	16	30902											
PBRM1	55193	broad.mit.edu;ucsc.edu	37	3	52598080	52598080	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	52598080	G	G	52598080	3	3	533	1	0	0	0	0	1	0	0	0	11498	1838	64	5	1071	5	PBRM1	3	52598080	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	195285	52598080	145424350	17	30903											
ROPN1B	152015	hgsc.bcm.edu;ucsc.edu	37	3	125690967	125690967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	125690967	G	T	125690967	3	4	533	1	0	0	0	0	1	0	0	0	13537	971	34	4	72	4	ROPN1B	3	125690967	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	73092887	125690967	72331463	18	30904											
MCCC1	56922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	182740269	182740269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	182740269	A	G	182740269	3	3	533	1	0	0	0	0	1	0	0	0	9381	43	2	3	388	3	MCCC1	3	182740269	Missense_Mutation	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	57049302	182740269	15282161	19	30905											
YTHDC1	91746	broad.mit.edu;ucsc.edu	37	4	69203460	69203460	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	69203460	G	G	69203460	3	3	533	1	0	0	0	0	1	0	0	0	17508	1841	64	5	1954	5	YTHDC1	4	69203460	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10		69203460	121950816	20	30906											
FSTL5	56884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	162307412	162307412	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	162307412	G	A	162307412	2	1	533	1	0	0	0	0	0	0	0	1	6087	1277	45	2		2	FSTL5	4	162307412	Silent	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	93103952	162307412	28846864	21	30907											
MAP3K1	4214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	56152549	56152549	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	56152549	T	A	56152549	4	1	533	1	0	0	0	0	0	1	0	0	9250	1821	63	5	611	5	MAP3K1	5	56152549	Nonsense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10		56152549	124762711	22	30908											
FBN2	2201	hgsc.bcm.edu;ucsc.edu	37	5	127686561	127686561	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	-	127686561	T	-	127686561	7	5	533	1	0	1	0	1	0	0	0	0	5710	1536	53	0	6107	0	FBN2	5	127686561	Frame_Shift_Del	DEL	T	TCGA-CJ-5682-01A-11D-1534-10	71534012	127686561	53228699	23	30909											
TCERG1	10915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	145843272	145843272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	145843272	C	T	145843272	3	4	533	1	0	0	0	0	1	0	0	0	15697	739	26	2	1069	2	TCERG1	5	145843272	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	18156711	145843272	35071988	24	30910											
PANK3	79646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	167993043	167993044	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	-	167993044	TG	-	167993043	7	5	533	1	0	1	0	1	0	0	0	0	11425	1812	63	0	522	0	PANK3	5	167993043	Frame_Shift_Del	DEL	TG	TCGA-CJ-5682-01A-11D-1534-10	22149771	167993043	12922217	25	30911											
ABT1	29777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	26598223	26598223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	26598223	G	T	26598223	3	4	533	1	0	0	0	0	1	0	0	0	101	1174	41	4	329	4	ABT1	6	26598223	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10		26598223	144516844	26	30912											
HLA-E	3133	broad.mit.edu	37	6	30459116	30459116	+	Silent	SNP	T	A	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	30459116	A	A	30459116	2	1	533	1	0	0	0	0	0	0	0	1	7217	1596	56	5		5	HLA-E	6	30459116	Silent	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	3860893	30459116	140655951	27	30913											
PM20D2	135293	broad.mit.edu;ucsc.edu	37	6	89871594	89871594	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	89871594	A	A	89871594	3	1	533	1	0	0	0	0	1	0	0	0	12136	1638	57	5	1163	5	PM20D2	6	89871594	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	59412478	89871594	81243473	28	30914											
RPF2	84154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	111346663	111346663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	111346663	C	T	111346663	3	4	533	1	0	0	0	0	1	0	0	0	13560	826	29	2	837	2	RPF2	6	111346663	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	21475069	111346663	59768404	29	30915											
PDE10A	10846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	165844947	165844947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	165844947	T	C	165844947	3	2	533	1	0	0	0	0	1	0	0	0	11637	1493	52	3	1722	3	PDE10A	6	165844947	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	54498284	165844947	5270120	30	30916											
SDK1	221935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	4152925	4152925	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	4152925	C	T	4152925	4	4	533	1	0	0	0	0	0	1	0	0	13981	876	31	1	3533	1	SDK1	7	4152925	Nonsense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10		4152925	154985738	31	30917											
STK31	56164	broad.mit.edu	37	7	23827688	23827688	+	Silent	SNP	T	C	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	23827688	C	C	23827688	2	2	533	1	0	0	0	0	0	0	0	1	15308	1461	51	3		3	STK31	7	23827688	Silent	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	19674763	23827688	135310975	32	30918											
TECPR1	25851	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	97851019	97851019	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	97851019	C	G	97851019	3	3	533	1	0	0	0	0	1	0	0	0	15755	796	28	4	402	4	TECPR1	7	97851019	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	74023331	97851019	61287644	33	30919											
GPR85	54329	broad.mit.edu	37	7	112724772	112724772	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	112724772	A	A	112724772	3	1	533	1	0	0	0	0	1	0	0	0	6722	1087	38	1	1111	1	GPR85	7	112724772	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	14873753	112724772	46413891	34	30920											
CCDC136	64753	broad.mit.edu;ucsc.edu	37	7	128457873	128457873	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	128457873	T	T	128457873	3	4	533	1	0	0	0	0	1	0	0	0	2772	893	31	1	3491	1	CCDC136	7	128457873	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	15733101	128457873	30680790	35	30921											
UBE2H	7328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129479130	129479130	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	129479130	T	A	129479130	3	1	533	1	0	0	0	0	1	0	0	0	16870	1406	49	5	215	5	UBE2H	7	129479130	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	1021257	129479130	29659533	36	30922											
DENND3	22898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	142186848	142186848	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	142186848	C	A	142186848	2	1	533	1	0	0	0	0	0	0	0	1	4434	639	23	4		4	DENND3	8	142186848	Silent	SNP	C	TCGA-CJ-5682-01A-11D-1534-10		142186848	4177174	37	30923											
TESK1	7016	broad.mit.edu;hgsc.bcm.edu	37	9	35608911	35608911	+	Silent	SNP	G	G	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	35608911	G	C	35608911	2	2	533	1	0	0	0	0	0	0	0	1	15779	1190	42	4		4	TESK1	9	35608911	Silent	SNP	G	TCGA-CJ-5682-01A-11D-1534-10		35608911	105604520	38	30924											
SHC3	53358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	91680466	91680466	+	Silent	SNP	A	A	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	91680466	A	C	91680466	2	2	533	1	0	0	0	0	0	0	0	1	14285	407	15	5		5	SHC3	9	91680466	Silent	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	56071555	91680466	49532965	39	30925											
RGS3	5998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	116246492	116246492	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	116246492	T	C	116246492	2	2	533	1	0	0	0	0	0	0	0	1	13319	1596	56	3		3	RGS3	9	116246492	Silent	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	24566026	116246492	24966939	40	30926											
SUV39H2	79723	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	14941580	14941580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	14941580	G	A	14941580	3	1	533	1	0	0	0	0	1	0	0	0	15425	1290	45	2	718	2	SUV39H2	10	14941580	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10		14941580	120593167	41	30927	376	2									
SUV39H2	79723	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	14941582	14941582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	14941582	C	A	14941582	3	1	533	1	0	0	0	0	1	0	0	0	15425	477	17	4	720	4	SUV39H2	10	14941582	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	2	14941582	120593165	42	30928	376	2									
C10orf118	55088	hgsc.bcm.edu;ucsc.edu	37	10	115917317	115917320	+	Frame_Shift_Del	DEL	TTAA	TTAA	-	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	TTAA	TTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	-	115917320	TTAA	-	115917317	7	5	533	1	0	1	0	1	0	0	0	0	1589	1841	64	0	1997	0	C10orf118	10	115917317	Frame_Shift_Del	DEL	TTAA	TCGA-CJ-5682-01A-11D-1534-10	100975735	115917317	19617430	43	30929											
ZDHHC13	54503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	19187855	19187855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	19187855	G	T	19187855	3	4	533	1	0	0	0	0	1	0	0	0	17615	1203	42	4	1451	4	ZDHHC13	11	19187855	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10		19187855	115818661	44	30930											
OR5F1	338674	broad.mit.edu;hgsc.bcm.edu	37	11	55761854	55761854	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	55761854	G	C	55761854	3	2	533	1	0	0	0	0	1	0	0	0	11165	1319	46	4	699	4	OR5F1	11	55761854	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	36573999	55761854	79244662	45	30931											
KRTAP5-11	440051	hgsc.bcm.edu	37	11	71293803	71293805	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	-	71293805	GCC	-	71293803	7	5	533	1	0	1	0	1	0	0	0	0	8567	958	34	0	393	0	KRTAP5-11	11	71293803	In_Frame_Del	DEL	GCC	TCGA-CJ-5682-01A-11D-1534-10	15531949	71293803	63712713	46	30932											
ST14	6768	hgsc.bcm.edu;ucsc.edu	37	11	130069949	130069949	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	-	130069949	G	-	130069949	7	5	533	1	0	1	0	1	0	0	0	0	15223	991	35	0	1973	0	ST14	11	130069949	Frame_Shift_Del	DEL	G	TCGA-CJ-5682-01A-11D-1534-10	58776146	130069949	4936567	47	30933											
CD163L1	283316	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7520737	7520737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	7520737	T	G	7520737	3	3	533	1	0	0	0	0	1	0	0	0	2970	1406	49	5	244	5	CD163L1	12	7520737	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10		7520737	126331158	48	30934											
LRRK2	120892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	40745464	40745464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	40745464	C	G	40745464	3	3	533	1	0	0	0	0	1	0	0	0	9040	796	28	4	6679	4	LRRK2	12	40745464	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	33224727	40745464	93106431	49	30935	377	2									
LRRK2	120892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	40745465	40745465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	40745465	T	A	40745465	3	1	533	1	0	0	0	0	1	0	0	0	9040	1580	55	5	6680	5	LRRK2	12	40745465	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	1	40745465	93106430	50	30936	377	2									
FMNL3	91010	broad.mit.edu;hgsc.bcm.edu	37	12	50045173	50045173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	50045173	C	T	50045173	3	4	533	1	0	0	0	0	1	0	0	0	5960	739	26	2	1467	2	FMNL3	12	50045173	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	9299708	50045173	83806722	51	30937											
LRP1	4035	broad.mit.edu;hgsc.bcm.edu	37	12	57588207	57588207	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	57588207	C	A	57588207	2	1	533	1	0	0	0	0	0	0	0	1	8958	668	24	4		4	LRP1	12	57588207	Silent	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	7543034	57588207	76263688	52	30938											
LRCH1	23143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	47279205	47279205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	47279205	T	C	47279205	3	2	533	1	0	0	0	0	1	0	0	0	8939	1764	61	3	1449	3	LRCH1	13	47279205	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10		47279205	67890673	53	30939											
RNASE12	493901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21058840	21058840	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	-	21058840	C	-	21058840	7	5	533	1	0	1	0	1	0	0	0	0	13415	864	30	0	404	0	RNASE12	14	21058840	Frame_Shift_Del	DEL	C	TCGA-CJ-5682-01A-11D-1534-10		21058840	86290700	54	30940											
SNRPN	6638	broad.mit.edu;hgsc.bcm.edu	37	15	25222145	25222145	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	25222145	C	G	25222145	3	3	533	1	0	0	0	0	1	0	0	0	14883	681	24	4	403	4	SNRPN	15	25222145	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10		25222145	77309247	55	30941											
HERC2	8924	broad.mit.edu;hgsc.bcm.edu	37	15	28499508	28499508	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	28499508	G	C	28499508	3	2	533	1	0	0	0	0	1	0	0	0	7065	1299	45	4	11772	4	HERC2	15	28499508	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	3277363	28499508	74031884	56	30942											
TCF12	6938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	57565458	57565458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	57565458	G	T	57565458	3	4	533	1	0	0	0	0	1	0	0	0	15699	942	33	4	2119	4	TCF12	15	57565458	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	29065950	57565458	44965934	57	30943											
NFATC3	4775	broad.mit.edu;ucsc.edu	37	16	68224816	68224816	+	Silent	SNP	T	A	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	68224816	A	A	68224816	2	1	533	1	0	0	0	0	0	0	0	1	10371	1829	64	5		5	NFATC3	16	68224816	Silent	SNP	T	TCGA-CJ-5682-01A-11D-1534-10		68224816	22129937	58	30944											
DHRS7C	201140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	9674867	9674867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	9674867	A	G	9674867	3	3	533	1	0	0	0	0	1	0	0	0	4499	43	2	3	65	3	DHRS7C	17	9674867	Missense_Mutation	SNP	A	TCGA-CJ-5682-01A-11D-1534-10		9674867	71520343	59	30945											
SLFN12L	100506736	broad.mit.edu;hgsc.bcm.edu	37	17	33802320	33802320	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	33802320	A	G	33802320	2	3	533	1	0	0	0	0	0	0	0	1	14748	291	11	3		3	SLFN12L	17	33802320	Silent	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	24127453	33802320	47392890	60	30946											
C17orf66	256957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34182344	34182344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	34182344	A	T	34182344	3	4	533	1	0	0	0	0	1	0	0	0	1876	304	11	5	280	5	C17orf66	17	34182344	Missense_Mutation	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	380024	34182344	47012866	61	30947											
CCDC45	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	62506316	62506316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	62506316	A	C	62506316	3	2	533	1	0	0	0	0	1	0	0	0	2818	69	3	5	184	5	CCDC45	17	62506316	Missense_Mutation	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	28323972	62506316	18688894	62	30948											
UNC13D	201294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73832900	73832900	+	Silent	SNP	A	A	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	73832900	A	T	73832900	2	4	533	1	0	0	0	0	0	0	0	1	16999	262	10	5		5	UNC13D	17	73832900	Silent	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	11326584	73832900	7362310	63	30949											
MYO5B	4645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	47500800	47500800	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	47500800	G	T	47500800	2	4	533	1	0	0	0	0	0	0	0	1	10086	958	34	4		4	MYO5B	18	47500800	Silent	SNP	G	TCGA-CJ-5682-01A-11D-1534-10		47500800	30576448	64	30950											
GTF2F1	2962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6381619	6381619	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	C	6381619	G	C	6381619	3	2	533	1	0	0	0	0	1	0	0	0	6865	1357	47	4	733	4	GTF2F1	19	6381619	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10		6381619	52747364	65	30951											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9087338	9087338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	9087338	A	G	9087338	3	3	533	1	0	0	0	0	1	0	0	0	9980	275	10	3	39382	3	MUC16	19	9087338	Missense_Mutation	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	2705719	9087338	50041645	66	30952											
DNMT1	1786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10250366	10250366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	10250366	A	G	10250366	3	3	533	1	0	0	0	0	1	0	0	0	4677	72	3	3	996	3	DNMT1	19	10250366	Missense_Mutation	SNP	A	TCGA-CJ-5682-01A-11D-1534-10	1163028	10250366	48878617	67	30953											
NFIX	4784	broad.mit.edu;hgsc.bcm.edu	37	19	13136046	13136046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	13136046	G	T	13136046	3	4	533	1	0	0	0	0	1	0	0	0	10381	1087	38	4	245	4	NFIX	19	13136046	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	2885680	13136046	45992937	68	30954											
NOTCH3	4854	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15276831	15276831	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	-	15276831	C	-	15276831	7	5	533	1	0	1	0	1	0	0	0	0	10557	835	29	0	1547	0	NOTCH3	19	15276831	Frame_Shift_Del	DEL	C	TCGA-CJ-5682-01A-11D-1534-10	2140785	15276831	43852152	69	30955											
LYPD5	284348	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44301842	44301842	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	44301842	G	T	44301842	2	4	533	1	0	0	0	0	0	0	0	1	9120	1219	43	4		4	LYPD5	19	44301842	Silent	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	29025011	44301842	14827141	70	30956											
CEACAM20	125931	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45026873	45026873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	45026873	C	T	45026873	3	4	533	1	0	0	0	0	1	0	0	0	3193	864	30	2	1286	2	CEACAM20	19	45026873	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	725031	45026873	14102110	71	30957											
ZNF616	90317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52619876	52619876	+	Silent	SNP	T	T	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	52619876	T	G	52619876	2	3	533	1	0	0	0	0	0	0	0	1	18053	1521	53	5		5	ZNF616	19	52619876	Silent	SNP	T	TCGA-CJ-5682-01A-11D-1534-10	7593003	52619876	6509107	72	30958											
CPXM1	56265	broad.mit.edu;ucsc.edu	37	20	2777900	2777900	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	2777900	G	G	2777900	3	3	533	1	0	0	0	0	1	0	0	0	3839	1580	55	5	1470	5	CPXM1	20	2777900	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10		2777900	60247620	73	30959											
BRWD1	54014	broad.mit.edu;hgsc.bcm.edu	37	21	40568620	40568620	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	40568620	T	G	40568620	3	3	533	1	0	0	0	0	1	0	0	0	1527	1606	56	5	834	5	BRWD1	21	40568620	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10		40568620	7561275	74	30960											
MYO18B	84700	broad.mit.edu;ucsc.edu	37	22	26272193	26272193	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	26272193	G	G	26272193	3	3	533	1	0	0	0	0	1	0	0	0	10073	1696	59	5	4208	5	MYO18B	22	26272193	Missense_Mutation	SNP	T	TCGA-CJ-5682-01A-11D-1534-10		26272193	25032373	75	30961											
PES1	23481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30973095	30973095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	A	30973095	G	A	30973095	3	1	533	1	0	0	0	0	1	0	0	0	11740	1086	38	1	65	1	PES1	22	30973095	Missense_Mutation	SNP	G	TCGA-CJ-5682-01A-11D-1534-10	4700902	30973095	20331471	76	30962											
RFPL2	10739	broad.mit.edu;hgsc.bcm.edu	37	22	32587136	32587136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	G	32587136	C	G	32587136	3	3	533	1	0	0	0	0	1	0	0	0	13267	855	30	4	380	4	RFPL2	22	32587136	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10	1614041	32587136	18717430	77	30963											
FAM3A	60343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153735234	153735234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5682-01A-11D-1534-10	TCGA-CJ-5682-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	deceb0ba-600f-491a-a207-2e0205ff89d2	377fbab4-2520-4501-98bf-b1193022b81f	T	153735234	C	T	153735234	3	4	533	1	0	0	0	0	1	0	0	0	5563	536	19	1	95	1	FAM3A	23	153735234	Missense_Mutation	SNP	C	TCGA-CJ-5682-01A-11D-1534-10		153735234	1535326	78	30964											
FAM73A	374986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78249000	78249000	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	78249000	T	C	78249000	2	2	534	1	0	0	0	0	0	0	0	1	5624	1809	63	3		3	FAM73A	1	78249000	Silent	SNP	T	TCGA-CJ-5683-01A-11D-1534-10		78249000	171001621	1	30965											
HIAT1	64645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100503796	100503796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	100503796	A	T	100503796	3	4	534	1	0	0	0	0	1	0	0	0	7104	188	7	5	10	5	HIAT1	1	100503796	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10	22254796	100503796	148746825	2	30966											
GPSM2	29899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109466798	109466798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	109466798	G	A	109466798	3	1	534	1	0	0	0	0	1	0	0	0	6742	1203	42	2	1827	2	GPSM2	1	109466798	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	8963002	109466798	139783823	3	30967											
MAGI3	260425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	114193677	114193677	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	114193677	A	T	114193677	3	4	534	1	0	0	0	0	1	0	0	0	9199	69	3	5	2343	5	MAGI3	1	114193677	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10	4726879	114193677	135056944	4	30968											
WDR3	10885	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	118483544	118483544	+	Missense_Mutation	SNP	C	C	T	rs142439174	bycluster;byfrequency;by1000genomes	TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	118483544	C	T	118483544	3	4	534	1	0	0	0	0	1	0	0	0	17297	536	19	1	792	1	WDR3	1	118483544	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	4289867	118483544	130767077	5	30969											
RPTN	126638	broad.mit.edu;ucsc.edu	37	1	152127611	152127611	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	152127611	T	T	152127611	3	4	534	1	0	0	0	0	1	0	0	0	13677	797	28	2	394	2	RPTN	1	152127611	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	33644067	152127611	97123010	6	30970											
FDPS	2224	broad.mit.edu;hgsc.bcm.edu	37	1	155279736	155279736	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	G	155279736	A	G	155279736	2	3	534	1	0	0	0	0	0	0	0	1	5810	69	3	3		3	FDPS	1	155279736	Silent	SNP	A	TCGA-CJ-5683-01A-11D-1534-10	3152125	155279736	93970885	7	30971											
RNASEL	6041	broad.mit.edu;ucsc.edu	37	1	182551376	182551376	+	Silent	SNP	G	A	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	182551376	A	A	182551376	2	1	534	1	0	0	0	0	0	0	0	1	13429	1161	41	2		2	RNASEL	1	182551376	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	27271640	182551376	66699245	8	30972											
NFASC	23114	broad.mit.edu;hgsc.bcm.edu	37	1	204955082	204955082	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	204955082	G	A	204955082	2	1	534	1	0	0	0	0	0	0	0	1	10366	1364	48	2		2	NFASC	1	204955082	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	22403706	204955082	44295539	9	30973											
C1orf55	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	226180697	226180697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	226180697	C	A	226180697	3	1	534	1	0	0	0	0	1	0	0	0	2049	855	30	4	1130	4	C1orf55	1	226180697	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	21225615	226180697	23069924	10	30974											
OBSCN	84033	broad.mit.edu;hgsc.bcm.edu	37	1	228403481	228403481	+	Silent	SNP	G	G	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	228403481	G	C	228403481	2	2	534	1	0	0	0	0	0	0	0	1	10819	1277	45	4		4	OBSCN	1	228403481	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	2222784	228403481	20847140	11	30975											
CNST	163882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	246797267	246797267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	246797267	C	A	246797267	3	1	534	1	0	0	0	0	1	0	0	0	3636	826	29	4	672	4	CNST	1	246797267	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	18393786	246797267	2453354	12	30976											
TNFAIP6	7130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152220485	152220485	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	152220485	A	C	152220485	3	2	534	1	0	0	0	0	1	0	0	0	16287	69	3	5	129	5	TNFAIP6	2	152220485	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10		152220485	90978888	13	30977											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170026249	170026249	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	170026249	G	A	170026249	2	1	534	1	0	0	0	0	0	0	0	1	8963	1103	39	1		1	LRP2	2	170026249	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	17805764	170026249	73173124	14	30978											
TMEM198	130612	broad.mit.edu	37	2	220412692	220412692	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	-	220412692	-	-	220412692	7	5	534	1	0	1	0	1	0	0	0	0	16131	739	26	0	637	0	TMEM198	2	220412692	Frame_Shift_Del	DEL	C	TCGA-CJ-5683-01A-11D-1534-10	50386443	220412692	22786681	15	30979											
UGT1A4	54657	broad.mit.edu	37	2	234628268	234628268	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	234628268	A	A	234628268	3	1	534	1	0	0	0	0	1	0	0	0	16959	739	26	4	804	4	UGT1A4	2	234628268	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	14215576	234628268	8571105	16	30980											
BOC	91653	broad.mit.edu;hgsc.bcm.edu	37	3	112998705	112998705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	112998705	C	A	112998705	3	1	534	1	0	0	0	0	1	0	0	0	1481	477	17	4	2097	4	BOC	3	112998705	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10		112998705	85023725	17	30981											
MUC13	56667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	124635228	124635228	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	124635228	C	T	124635228	2	4	534	1	0	0	0	0	0	0	0	1	9978	912	32	2		2	MUC13	3	124635228	Silent	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	11636523	124635228	73387202	18	30982											
MUC4	4585	hgsc.bcm.edu	37	3	195514998	195515045	+	In_Frame_Del	DEL	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	-	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	-	195515045	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	-	195514998	7	5	534	1	0	1	0	1	0	0	0	0	9985	1219	43	0		0	MUC4	3	195514998	In_Frame_Del	DEL	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	TCGA-CJ-5683-01A-11D-1534-10	70879770	195514998	2507432	19	30983											
PAPSS1	9061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	108574727	108574727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	108574727	C	T	108574727	3	4	534	1	0	0	0	0	1	0	0	0	11441	884	31	1	733	1	PAPSS1	4	108574727	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10		108574727	82579549	20	30984											
GLRA3	8001	broad.mit.edu;ucsc.edu	37	4	175649781	175649781	+	Silent	SNP	A	G	G	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	G	175649781	G	G	175649781	2	3	534	1	0	0	0	0	0	0	0	1	6463	175	7	3		3	GLRA3	4	175649781	Silent	SNP	A	TCGA-CJ-5683-01A-11D-1534-10	67075054	175649781	15504495	21	30985											
SLC35A4	113829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139946853	139946853	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	139946853	T	C	139946853	2	2	534	1	0	0	0	0	0	0	0	1	14586	1461	51	3		3	SLC35A4	5	139946853	Silent	SNP	T	TCGA-CJ-5683-01A-11D-1534-10		139946853	40968407	22	30986											
PCDHB14	56122	broad.mit.edu;hgsc.bcm.edu	37	5	140605198	140605198	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	-	140605198	G	-	140605198	7	5	534	1	0	1	0	1	0	0	0	0	11546	1364	48	0	2123	0	PCDHB14	5	140605198	Frame_Shift_Del	DEL	G	TCGA-CJ-5683-01A-11D-1534-10	658345	140605198	40310062	23	30987											
TCP11	6954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35086231	35086231	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	35086231	G	A	35086231	4	1	534	1	0	0	0	0	0	1	0	0	15725	1328	46	2	188	2	TCP11	6	35086231	Nonsense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10		35086231	136028836	24	30988											
HTR1E	3354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	87725912	87725912	+	Missense_Mutation	SNP	G	G	A	rs61735411		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	87725912	G	A	87725912	3	1	534	1	0	0	0	0	1	0	0	0	7446	1116	39	1	862	1	HTR1E	6	87725912	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	52639681	87725912	83389155	25	30989											
FBXO30	84085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	146126842	146126842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	146126842	T	C	146126842	3	2	534	1	0	0	0	0	1	0	0	0	5747	1792	62	3	1545	3	FBXO30	6	146126842	Missense_Mutation	SNP	T	TCGA-CJ-5683-01A-11D-1534-10	58400930	146126842	24988225	26	30990											
SDK1	221935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	4218194	4218194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	4218194	G	A	4218194	3	1	534	1	0	0	0	0	1	0	0	0	13981	1145	40	1	5212	1	SDK1	7	4218194	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10		4218194	154920469	27	30991											
RBAK	57786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	5105059	5105059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	G	5105059	A	G	5105059	3	3	534	1	0	0	0	0	1	0	0	0	13113	247	9	3	1986	3	RBAK	7	5105059	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10	886865	5105059	154033604	28	30992											
TNRC18	84629	broad.mit.edu	37	7	5352305	5352305	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	-	5352305	-	-	5352305	7	5	534	1	0	1	0	1	0	0	0	0	16351	1335	47	0	705	0	TNRC18	7	5352305	Frame_Shift_Del	DEL	G	TCGA-CJ-5683-01A-11D-1534-10	247246	5352305	153786358	29	30993											
CCDC126	90693	broad.mit.edu;ucsc.edu	37	7	23650959	23650959	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	23650959	C	C	23650959	3	2	534	1	0	0	0	0	1	0	0	0	2764	14	1	5	27	5	CCDC126	7	23650959	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10	18298654	23650959	135487704	30	30994											
AKAP9	10142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	91709305	91709305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	91709305	A	T	91709305	3	4	534	1	0	0	0	0	1	0	0	0	459	391	14	5	7980	5	AKAP9	7	91709305	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10	68058346	91709305	67429358	31	30995											
AZGP1	563	broad.mit.edu	37	7	99573623	99573623	+	Silent	SNP	G	T	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	99573623	T	T	99573623	2	4	534	1	0	0	0	0	0	0	0	1	1239	1161	41	4		4	AZGP1	7	99573623	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	7864318	99573623	59565040	32	30996											
EMID2	136227	hgsc.bcm.edu	37	7	101063320	101063320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	101063320	C	T	101063320	3	4	534	1	0	0	0	0	1	0	0	0	5094	536	19	1	227	1	EMID2	7	101063320	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	1489697	101063320	58075343	33	30997											
MLL3	58508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151877902	151877902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	151877902	T	C	151877902	3	2	534	1	0	0	0	0	1	0	0	0	9629	1580	55	3	7788	3	MLL3	7	151877902	Missense_Mutation	SNP	T	TCGA-CJ-5683-01A-11D-1534-10	50814582	151877902	7260761	34	30998											
NOM1	64434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	156759742	156759742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	156759742	G	A	156759742	3	1	534	1	0	0	0	0	1	0	0	0	10537	1203	42	2	2288	2	NOM1	7	156759742	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	4881840	156759742	2378921	35	30999											
MTMR7	9108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17157530	17157530	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	17157530	G	A	17157530	2	1	534	1	0	0	0	0	0	0	0	1	9955	1368	48	2		2	MTMR7	8	17157530	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10		17157530	129206492	36	31000											
DENND4C	55667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	19305459	19305459	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	-	19305459	A	-	19305459	7	5	534	1	0	1	0	1	0	0	0	0	4437	449	16	0	735	0	DENND4C	9	19305459	Frame_Shift_Del	DEL	A	TCGA-CJ-5683-01A-11D-1534-10		19305459	121907972	37	31001											
PCDH15	65217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	55779999	55779999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	55779999	A	T	55779999	3	4	534	1	0	0	0	0	1	0	0	0	11518	362	13	5	4838	5	PCDH15	10	55779999	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10		55779999	79754748	38	31002											
TPH1	7166	broad.mit.edu;ucsc.edu	37	11	18045491	18045491	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	18045491	A	A	18045491	3	1	534	1	0	0	0	0	1	0	0	0	16413	913	32	4	376	4	TPH1	11	18045491	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10		18045491	116961025	39	31003											
FBXO3	26273	broad.mit.edu;ucsc.edu	37	11	33790514	33790514	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	33790514	A	A	33790514	3	1	534	1	0	0	0	0	1	0	0	0	5746	913	32	4	1219	4	FBXO3	11	33790514	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	15745023	33790514	101216002	40	31004											
SYT12	91683	hgsc.bcm.edu	37	11	66816101	66816101	+	Missense_Mutation	SNP	G	G	A	rs141165304	byfrequency	TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	66816101	G	A	66816101	3	1	534	1	0	0	0	0	1	0	0	0	15480	1145	40	1	1165	1	SYT12	11	66816101	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	33025587	66816101	68190415	41	31005											
LRP5	4041	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	68183829	68183829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	68183829	C	A	68183829	3	1	534	1	0	0	0	0	1	0	0	0	8967	913	32	4	2911	4	LRP5	11	68183829	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	1367728	68183829	66822687	42	31006											
CLPB	81570	broad.mit.edu;ucsc.edu	37	11	72012879	72012879	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	72012879	T	T	72012879	3	4	534	1	0	0	0	0	1	0	0	0	3553	478	17	2	760	2	CLPB	11	72012879	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	3829050	72012879	62993637	43	31007											
MOGAT2	80168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	75438650	75438650	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	75438650	G	T	75438650	2	4	534	1	0	0	0	0	0	0	0	1	9702	1219	43	4		4	MOGAT2	11	75438650	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	3425771	75438650	59567866	44	31008											
DPAGT1	1798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118968667	118968667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	118968667	C	T	118968667	3	4	534	1	0	0	0	0	1	0	0	0	4712	797	28	2	427	2	DPAGT1	11	118968667	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	43530017	118968667	16037849	45	31009											
USP2	9099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119243611	119243611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	G	119243611	A	G	119243611	3	3	534	1	0	0	0	0	1	0	0	0	17063	449	16	3	1436	3	USP2	11	119243611	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10	274944	119243611	15762905	46	31010											
KRT82	3888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52795073	52795075	+	Frame_Shift_Del	DEL	CTT	CTT	-	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	-	52795075	CTT	-	52795073	7	5	534	1	0	1	0	1	0	0	0	0	8503	695	24	0	888	0	KRT82	12	52795073	Frame_Shift_Del	DEL	CTT	TCGA-CJ-5683-01A-11D-1534-10		52795073	81056822	47	31011											
LRP1	4035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57548478	57548478	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	57548478	C	T	57548478	2	4	534	1	0	0	0	0	0	0	0	1	8958	697	25	2		2	LRP1	12	57548478	Silent	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	4753405	57548478	76303417	48	31012											
EEA1	8411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	93171332	93171332	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	-	93171332	T	-	93171332	7	5	534	1	0	1	0	1	0	0	0	0	4923	1725	60	0	246	0	EEA1	12	93171332	Frame_Shift_Del	DEL	T	TCGA-CJ-5683-01A-11D-1534-10	35622854	93171332	40680563	49	31013											
TMEM132B	114795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	125834194	125834194	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	125834194	T	C	125834194	2	2	534	1	0	0	0	0	0	0	0	1	16058	1742	61	3		3	TMEM132B	12	125834194	Silent	SNP	T	TCGA-CJ-5683-01A-11D-1534-10	32662862	125834194	8017701	50	31014											
NAA16	79612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	41932483	41932483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	41932483	G	C	41932483	3	2	534	1	0	0	0	0	1	0	0	0	10126	1020	36	4	1173	4	NAA16	13	41932483	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10		41932483	73237395	51	31015											
RASA3	22821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	114782719	114782719	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	114782719	G	T	114782719	2	4	534	1	0	0	0	0	0	0	0	1	13075	1048	37	4		4	RASA3	13	114782719	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	72850236	114782719	387159	52	31016											
METT11D1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21461323	21461323	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	G	21461323	T	G	21461323	3	3	534	1	0	0	0	0	1	0	0	0	9498	1841	64	5	597	5	METT11D1	14	21461323	Missense_Mutation	SNP	T	TCGA-CJ-5683-01A-11D-1534-10		21461323	85888217	53	31017											
MAX	4149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	65569042	65569042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	65569042	C	A	65569042	3	1	534	1	0	0	0	0	1	0	0	0	9346	826	29	4	826	4	MAX	14	65569042	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	44107719	65569042	41780498	54	31018											
TDP1	55775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	90437547	90437547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	90437547	G	A	90437547	3	1	534	1	0	0	0	0	1	0	0	0	15740	1290	45	2	702	2	TDP1	14	90437547	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	24868505	90437547	16911993	55	31019											
RYR3	6263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	33842489	33842489	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	G	33842489	C	G	33842489	3	3	534	1	0	0	0	0	1	0	0	0	13783	855	30	4	982	4	RYR3	15	33842489	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10		33842489	68688903	56	31020											
MYO5A	4644	broad.mit.edu;ucsc.edu	37	15	52720650	52720650	+	Silent	SNP	C	G	G	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	G	52720650	G	G	52720650	2	3	534	1	0	0	0	0	0	0	0	1	10085	697	25	4		4	MYO5A	15	52720650	Silent	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	18878161	52720650	49810742	57	31021											
PIGQ	9091	hgsc.bcm.edu	37	16	632283	632283	+	Missense_Mutation	SNP	G	G	A	rs7187227	bycluster;byfrequency;by1000genomes	TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	632283	G	A	632283	3	1	534	1	0	0	0	0	1	0	0	0	11903	1116	39	1	1601	1	PIGQ	16	632283	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10		632283	89722470	58	31022											
ABAT	18	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	8844355	8844355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	8844355	G	A	8844355	3	1	534	1	0	0	0	0	1	0	0	0	27	1058	37	1	289	1	ABAT	16	8844355	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	8212072	8844355	81510398	59	31023											
ACSM2B	348158	broad.mit.edu;hgsc.bcm.edu	37	16	20548590	20548590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	20548590	C	T	20548590	3	4	534	1	0	0	0	0	1	0	0	0	184	536	19	1	13	1	ACSM2B	16	20548590	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	11704235	20548590	69806163	60	31024											
SNX20	124460	broad.mit.edu	37	16	50709790	50709790	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	50709790	T	T	50709790	3	4	534	1	0	0	0	0	1	0	0	0	14905	652	23	1	928	1	SNX20	16	50709790	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	30161200	50709790	39644963	61	31025											
HYDIN	54768	broad.mit.edu	37	16	70889122	70889122	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	70889122	T	T	70889122	3	4	534	1	0	0	0	0	1	0	0	0	7474	14	1	5	3069	5	HYDIN	16	70889122	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10	20179332	70889122	19465631	62	31026											
SLC47A2	146802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	19610039	19610039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	G	19610039	A	G	19610039	3	3	534	1	0	0	0	0	1	0	0	0	14661	72	3	3	973	3	SLC47A2	17	19610039	Missense_Mutation	SNP	A	TCGA-CJ-5683-01A-11D-1534-10		19610039	61585171	63	31027											
KRT13	3860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39659227	39659227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	39659227	T	C	39659227	3	2	534	1	0	0	0	0	1	0	0	0	8457	1550	54	3	537	3	KRT13	17	39659227	Missense_Mutation	SNP	T	TCGA-CJ-5683-01A-11D-1534-10	20049188	39659227	41535983	64	31028											
PDK2	5164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48183306	48183306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	48183306	G	T	48183306	3	4	534	1	0	0	0	0	1	0	0	0	11683	1348	47	4	404	4	PDK2	17	48183306	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	8524079	48183306	33011904	65	31029											
SPAG9	9043	broad.mit.edu	37	17	49197990	49197990	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	49197990	C	C	49197990	3	2	534	1	0	0	0	0	1	0	0	0	14998	1299	45	4	4057	4	SPAG9	17	49197990	Missense_Mutation	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	1014684	49197990	31997220	66	31030											
CDK3	1018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73999331	73999331	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	73999331	T	A	73999331	3	1	534	1	0	0	0	0	1	0	0	0	3142	1435	50	5	666	5	CDK3	17	73999331	Missense_Mutation	SNP	T	TCGA-CJ-5683-01A-11D-1534-10	24801341	73999331	7195879	67	31031	378	2									
CDK3	1018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73999332	73999332	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	G	73999332	C	G	73999332	3	3	534	1	0	0	0	0	1	0	0	0	3142	903	32	4	667	4	CDK3	17	73999332	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10	1	73999332	7195878	68	31032	378	2									
BAHCC1	57597	broad.mit.edu;hgsc.bcm.edu	37	17	79426336	79426336	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	79426336	G	A	79426336	2	1	534	1	0	0	0	0	0	0	0	1	1296	962	34	2		2	BAHCC1	17	79426336	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	5427004	79426336	1768874	69	31033											
DCC	1630	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	50683750	50683750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	50683750	C	A	50683750	3	1	534	1	0	0	0	0	1	0	0	0	4284	681	24	4	1316	4	DCC	18	50683750	Missense_Mutation	SNP	C	TCGA-CJ-5683-01A-11D-1534-10		50683750	27393498	70	31034											
ADAMTSL5	339366	broad.mit.edu	37	19	1508023	1508023	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	-	1508023	-	-	1508023	7	5	534	1	0	1	0	1	0	0	0	0	278	246	9	0	864	0	ADAMTSL5	19	1508023	Frame_Shift_Del	DEL	A	TCGA-CJ-5683-01A-11D-1534-10		1508023	57620960	71	31035											
FBN3	84467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8162185	8162185	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	8162185	G	A	8162185	2	1	534	1	0	0	0	0	0	0	0	1	5711	962	34	2		2	FBN3	19	8162185	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	6654162	8162185	50966798	72	31036											
CACNA1A	773	hgsc.bcm.edu;ucsc.edu	37	19	13366037	13366038	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	-	13366038	GC	-	13366037	7	5	534	1	0	1	0	1	0	0	0	0	2540	962	34	0	3071	0	CACNA1A	19	13366037	Frame_Shift_Del	DEL	GC	TCGA-CJ-5683-01A-11D-1534-10	5203852	13366037	45762946	73	31037											
C19orf12	83636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	30193856	30193856	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	T	30193856	G	T	30193856	2	4	534	1	0	0	0	0	0	0	0	1	1911	987	35	4		4	C19orf12	19	30193856	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	16827819	30193856	28935127	74	31038											
PPP2R1A	5518	hgsc.bcm.edu;ucsc.edu	37	19	52723429	52723429	+	RNA	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	52723429	G	A	52723429	1	1	534	0	1	0	0	0	0	0	0	0	12392	1276	44	2		2	PPP2R1A	19	52723429	RNA	SNP	G	TCGA-CJ-5683-01A-11D-1534-10	22529573	52723429	6405554	75	31039											
SLC23A2	9962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	4839999	4839999	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	4839999	G	A	4839999	2	1	534	1	0	0	0	0	0	0	0	1	14476	1161	41	2		2	SLC23A2	20	4839999	Silent	SNP	G	TCGA-CJ-5683-01A-11D-1534-10		4839999	58185521	76	31040											
SFRS15	0	hgsc.bcm.edu	37	21	33058544	33058544	+	Intron	SNP	A	A	C	rs80021168	alternate_allele	TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	C	33058544	A	C	33058544	1	2	534	0	1	0	0	0	0	0	0	0	14184	87	3	5		5	SFRS15	21	33058544	Intron	SNP	A	TCGA-CJ-5683-01A-11D-1534-10		33058544	15071351	77	31041											
NEFH	4744	hgsc.bcm.edu	37	22	29885572	29885573	+	In_Frame_Ins	INS	-	-	CCCTGAGAAGGCCAAGTC	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	CCCTGAGAAGGCCAAGTC	29885573	-	CCCTGAGAAGGCCAAGTC	29885572	7	5	534	1	0	1	1	0	0	0	0	0	10321	855	30	0	1957	0	NEFH	22	29885572	In_Frame_Ins	INS	-	TCGA-CJ-5683-01A-11D-1534-10		29885572	21418994	78	31042											
ATP7A	538	hgsc.bcm.edu	37	X	77284798	77284799	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-5683-01A-11D-1534-10	TCGA-CJ-5683-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b85e29c5-0206-4d65-aa46-179a55c0ceae	fdd52cce-70b6-4f2d-873b-dbfe5323841d	A	77284799	-	A	77284798	7	5	534	1	0	1	1	0	0	0	0	0	1190	595	21	0	3022	0	ATP7A	23	77284798	Frame_Shift_Ins	INS	-	TCGA-CJ-5683-01A-11D-1534-10		77284798	77985762	79	31043											
ESPN	83715	broad.mit.edu;hgsc.bcm.edu	37	1	6504722	6504722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	G	6504722	A	G	6504722	3	3	535	1	0	0	0	0	1	0	0	0	5256	72	3	3	1194	3	ESPN	1	6504722	Missense_Mutation	SNP	A	TCGA-CJ-5684-01A-11D-1534-10		6504722	242745899	1	31044											
LOC440563	440563	broad.mit.edu	37	1	13183480	13183480	+	Silent	SNP	A	G	G	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	G	13183480	G	G	13183480	2	3	535	1	0	0	0	0	0	0	0	1	8886	291	11	3		3	LOC440563	1	13183480	Silent	SNP	A	TCGA-CJ-5684-01A-11D-1534-10	6678758	13183480	236067141	2	31045											
ZMYM6	9204	broad.mit.edu	37	1	35453715	35453715	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	C	35453715	C	C	35453715	3	2	535	1	0	0	0	0	1	0	0	0	17716	391	14	5	1013	5	ZMYM6	1	35453715	Missense_Mutation	SNP	A	TCGA-CJ-5684-01A-11D-1534-10	22270235	35453715	213796906	3	31046											
TXNIP	10628	broad.mit.edu;hgsc.bcm.edu	37	1	145438828	145438828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	145438828	C	A	145438828	3	1	535	1	0	0	0	0	1	0	0	0	16815	913	32	4	28	4	TXNIP	1	145438828	Missense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	109985113	145438828	103811793	4	31047											
TCHH	7062	broad.mit.edu;ucsc.edu	37	1	152084846	152084846	+	Silent	SNP	G	T	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	152084846	T	T	152084846	2	4	535	1	0	0	0	0	0	0	0	1	15712	1086	38	4		4	TCHH	1	152084846	Silent	SNP	G	TCGA-CJ-5684-01A-11D-1534-10	6646018	152084846	97165775	5	31048											
DYRK3	8444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	206822222	206822222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	206822222	G	T	206822222	3	4	535	1	0	0	0	0	1	0	0	0	4859	1174	41	4	1710	4	DYRK3	1	206822222	Missense_Mutation	SNP	G	TCGA-CJ-5684-01A-11D-1534-10	54737376	206822222	42428399	6	31049											
THSD7B	80731	broad.mit.edu;ucsc.edu	37	2	138421031	138421031	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	138421031	A	A	138421031	3	1	535	1	0	0	0	0	1	0	0	0	15892	507	18	4	4547	4	THSD7B	2	138421031	Missense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10		138421031	104778342	7	31050											
ZSWIM2	151112	hgsc.bcm.edu	37	2	187692936	187692937	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	GGG	187692937	-	GGG	187692936	7	5	535	1	0	1	1	0	0	0	0	0	18253	175	7	0	228	0	ZSWIM2	2	187692936	In_Frame_Ins	INS	-	TCGA-CJ-5684-01A-11D-1534-10	49271905	187692936	55506437	8	31051											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188205	10188205	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	C	10188205	T	C	10188205	2	2	535	1	0	0	0	0	0	0	0	1	17174	1828	64	3		3	VHL	3	10188205	Silent	SNP	T	TCGA-CJ-5684-01A-11D-1534-10		10188205	187834225	9	31052	379	2									
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188208	10188208	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	C	10188208	G	C	10188208	3	2	535	1	0	0	0	0	1	0	0	0	17174	1212	42	4	357	4	VHL	3	10188208	Missense_Mutation	SNP	G	TCGA-CJ-5684-01A-11D-1534-10	3	10188208	187834222	10	31053	379	2									
CYP8B1	1582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	42916230	42916230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	G	42916230	A	G	42916230	3	3	535	1	0	0	0	0	1	0	0	0	4200	43	2	3	430	3	CYP8B1	3	42916230	Missense_Mutation	SNP	A	TCGA-CJ-5684-01A-11D-1534-10	32728022	42916230	155106200	11	31054											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47158115	47158115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	47158115	T	A	47158115	3	1	535	1	0	0	0	0	1	0	0	0	14144	1490	52	5	3182	5	SETD2	3	47158115	Missense_Mutation	SNP	T	TCGA-CJ-5684-01A-11D-1534-10	4241885	47158115	150864315	12	31055											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52610695	52610695	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	52610695	G	A	52610695	4	1	535	1	0	0	0	0	0	1	0	0	11498	1066	37	1	1383	1	PBRM1	3	52610695	Nonsense_Mutation	SNP	G	TCGA-CJ-5684-01A-11D-1534-10	5452580	52610695	145411735	13	31056											
IMPG2	50939	broad.mit.edu;ucsc.edu	37	3	101038458	101038458	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	101038458	A	A	101038458	3	1	535	1	0	0	0	0	1	0	0	0	7736	739	26	4	3493	4	IMPG2	3	101038458	Missense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	48427763	101038458	96983972	14	31057	380	2									
IMPG2	50939	broad.mit.edu	37	3	101038459	101038459	+	Silent	SNP	C	A	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	101038459	A	A	101038459	2	1	535	1	0	0	0	0	0	0	0	1	7736	581	21	4		4	IMPG2	3	101038459	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	1	101038459	96983971	15	31058	380	2									
CENPE	1062	broad.mit.edu;ucsc.edu	37	4	104097155	104097155	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	104097155	A	A	104097155	4	1	535	1	0	0	0	0	0	1	0	0	3232	835	29	4	6804	4	CENPE	4	104097155	Nonsense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10		104097155	87057121	16	31059											
SLC12A2	6558	broad.mit.edu;ucsc.edu	37	5	127488499	127488499	+	Splice_Site	SNP	T	G	G	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	G	127488499	G	G	127488499	5	3	535	1	0	0	0	0	0	0	1	0	14396	1652	57	5	2423	5	SLC12A2	5	127488499	Splice_Site	SNP	T	TCGA-CJ-5684-01A-11D-1534-10		127488499	53426761	17	31060											
GRM4	2914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33996013	33996013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	33996013	C	T	33996013	3	4	535	1	0	0	0	0	1	0	0	0	6806	768	27	1	173	1	GRM4	6	33996013	Missense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10		33996013	137119054	18	31061											
FBXL4	26235	hgsc.bcm.edu;ucsc.edu	37	6	99365322	99365322	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	-	99365322	A	-	99365322	7	5	535	1	0	1	0	1	0	0	0	0	5728	349	13	0	1103	0	FBXL4	6	99365322	Frame_Shift_Del	DEL	A	TCGA-CJ-5684-01A-11D-1534-10	65369309	99365322	71749745	19	31062	381	2									
FBXL4	26235	hgsc.bcm.edu;ucsc.edu	37	6	99365325	99365326	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	-	99365326	AC	-	99365325	7	5	535	1	0	1	0	1	0	0	0	0	5728	272	10	0	1106	0	FBXL4	6	99365325	Frame_Shift_Del	DEL	AC	TCGA-CJ-5684-01A-11D-1534-10	3	99365325	71749742	20	31063	381	2									
MAP3K4	4216	hgsc.bcm.edu	37	6	161519378	161519378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	161519378	C	T	161519378	3	4	535	1	0	0	0	0	1	0	0	0	9259	797	28	2	3659	2	MAP3K4	6	161519378	Missense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	62154053	161519378	9595689	21	31064											
TYW1	55253	broad.mit.edu;hgsc.bcm.edu	37	7	66532334	66532334	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	66532334	C	T	66532334	2	4	535	1	0	0	0	0	0	0	0	1	16830	784	28	2		2	TYW1	7	66532334	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10		66532334	92606329	22	31065											
SDR16C5	195814	broad.mit.edu;ucsc.edu	37	8	57214061	57214061	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	G	57214061	G	G	57214061	3	3	535	1	0	0	0	0	1	0	0	0	13984	43	2	3	25	3	SDR16C5	8	57214061	Missense_Mutation	SNP	A	TCGA-CJ-5684-01A-11D-1534-10		57214061	89149961	23	31066											
KIAA1429	25962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	95530150	95530150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	95530150	G	A	95530150	3	1	535	1	0	0	0	0	1	0	0	0	8238	1294	45	2	3018	2	KIAA1429	8	95530150	Missense_Mutation	SNP	G	TCGA-CJ-5684-01A-11D-1534-10	38316089	95530150	50833872	24	31067											
TEK	7010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	27109633	27109633	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	27109633	C	T	27109633	2	4	535	1	0	0	0	0	0	0	0	1	15763	842	30	2		2	TEK	9	27109633	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10		27109633	114103798	25	31068											
USP20	10868	hgsc.bcm.edu;ucsc.edu	37	9	132636882	132636883	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	132636883	-	T	132636882	7	5	535	1	0	1	1	0	0	0	0	0	17064	875	31	0	1830	0	USP20	9	132636882	Frame_Shift_Ins	INS	-	TCGA-CJ-5684-01A-11D-1534-10	105527249	132636882	8576549	26	31069	382	2									
USP20	10868	hgsc.bcm.edu	37	9	132636883	132636883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	132636883	G	T	132636883	3	4	535	1	0	0	0	0	1	0	0	0	17064	1116	39	4	1831	4	USP20	9	132636883	Missense_Mutation	SNP	G	TCGA-CJ-5684-01A-11D-1534-10	1	132636883	8576548	27	31070	382	2									
LAMC3	10319	broad.mit.edu	37	9	133901946	133901947	+	Frame_Shift_Del	DEL	CT	-	-	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	-	133901947	-	-	133901946	7	5	535	1	0	1	0	1	0	0	0	0	8623	668	24	0	654	0	LAMC3	9	133901946	Frame_Shift_Del	DEL	CT	TCGA-CJ-5684-01A-11D-1534-10	1265063	133901946	7311485	28	31071											
PCDH15	65217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	55755498	55755498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	C	55755498	T	C	55755498	3	2	535	1	0	0	0	0	1	0	0	0	11518	1522	53	3	4759	3	PCDH15	10	55755498	Missense_Mutation	SNP	T	TCGA-CJ-5684-01A-11D-1534-10		55755498	79779249	29	31072	383	2									
PCDH15	65217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	55755499	55755499	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	55755499	A	T	55755499	3	4	535	1	0	0	0	0	1	0	0	0	11518	359	13	5	4760	5	PCDH15	10	55755499	Missense_Mutation	SNP	A	TCGA-CJ-5684-01A-11D-1534-10	1	55755499	79779248	30	31073	383	2									
MMS19	64210	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99229886	99229886	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	99229886	C	T	99229886	2	4	535	1	0	0	0	0	0	0	0	1	9679	608	21	2		2	MMS19	10	99229886	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	43474387	99229886	36304861	31	31074											
KCNC1	3746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	17793557	17793557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	17793557	G	A	17793557	3	1	535	1	0	0	0	0	1	0	0	0	8021	1145	40	1	922	1	KCNC1	11	17793557	Missense_Mutation	SNP	G	TCGA-CJ-5684-01A-11D-1534-10		17793557	117212959	32	31075											
TMEM86A	144110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18722527	18722527	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	18722527	C	T	18722527	2	4	535	1	0	0	0	0	0	0	0	1	16220	776	27	1		1	TMEM86A	11	18722527	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	928970	18722527	116283989	33	31076											
TNKS1BP1	85456	broad.mit.edu	37	11	57088165	57088165	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	-	57088165	-	-	57088165	7	5	535	1	0	1	0	1	0	0	0	0	16332	1000	35	0	5109	0	TNKS1BP1	11	57088165	Frame_Shift_Del	DEL	G	TCGA-CJ-5684-01A-11D-1534-10	38365638	57088165	77918351	34	31077											
C11orf63	79864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	122817268	122817268	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	122817268	A	T	122817268	3	4	535	1	0	0	0	0	1	0	0	0	1656	188	7	5	1779	5	C11orf63	11	122817268	Missense_Mutation	SNP	A	TCGA-CJ-5684-01A-11D-1534-10	65729103	122817268	12189248	35	31078											
AKAP3	10566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	4747326	4747326	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	4747326	C	A	4747326	4	1	535	1	0	0	0	0	0	1	0	0	452	603	21	4	2536	4	AKAP3	12	4747326	Nonsense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10		4747326	129104569	36	31079											
VWF	7450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6091108	6091108	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	6091108	C	T	6091108	2	4	535	1	0	0	0	0	0	0	0	1	17258	755	27	1		1	VWF	12	6091108	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	1343782	6091108	127760787	37	31080											
E2F7	144455	broad.mit.edu;ucsc.edu	37	12	77424037	77424037	+	Silent	SNP	G	T	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	77424037	T	T	77424037	2	4	535	1	0	0	0	0	0	0	0	1	4874	929	33	4		4	E2F7	12	77424037	Silent	SNP	G	TCGA-CJ-5684-01A-11D-1534-10	71332929	77424037	56427858	38	31081											
TESC	54997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117477015	117477015	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	117477015	T	A	117477015	3	1	535	1	0	0	0	0	1	0	0	0	15778	1449	50	5	80	5	TESC	12	117477015	Missense_Mutation	SNP	T	TCGA-CJ-5684-01A-11D-1534-10	40052978	117477015	16374880	39	31082											
LATS2	26524	hgsc.bcm.edu;ucsc.edu	37	13	21557772	21557773	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	21557773	-	T	21557772	7	5	535	1	0	1	1	0	0	0	0	0	8654	1136	40	0	1209	0	LATS2	13	21557772	Frame_Shift_Ins	INS	-	TCGA-CJ-5684-01A-11D-1534-10		21557772	93612106	40	31083											
PABPC3	5042	hgsc.bcm.edu	37	13	25671786	25671786	+	Missense_Mutation	SNP	G	G	A	rs113301206	bycluster;byfrequency	TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	25671786	G	A	25671786	3	1	535	1	0	0	0	0	1	0	0	0	11372	1029	36	2	1452	2	PABPC3	13	25671786	Missense_Mutation	SNP	G	TCGA-CJ-5684-01A-11D-1534-10	4114014	25671786	89498092	41	31084											
MYCBP2	23077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	77785318	77785318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	G	77785318	A	G	77785318	3	3	535	1	0	0	0	0	1	0	0	0	10025	449	16	3	10880	3	MYCBP2	13	77785318	Missense_Mutation	SNP	A	TCGA-CJ-5684-01A-11D-1534-10	52113532	77785318	37384560	42	31085											
COCH	1690	hgsc.bcm.edu	37	14	31358882	31358883	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	31358883	-	T	31358882	7	5	535	1	0	1	1	0	0	0	0	0	3658	797	28	0	1580	0	COCH	14	31358882	Frame_Shift_Ins	INS	-	TCGA-CJ-5684-01A-11D-1534-10		31358882	75990658	43	31086											
SERPINA4	5267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	95029883	95029883	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	95029883	C	T	95029883	2	4	535	1	0	0	0	0	0	0	0	1	14104	796	28	2		2	SERPINA4	14	95029883	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	63671001	95029883	12319657	44	31087											
DNAH2	146754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7667223	7667223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	7667223	C	T	7667223	3	4	535	1	0	0	0	0	1	0	0	0	4604	893	31	1	3123	1	DNAH2	17	7667223	Missense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10		7667223	73527987	45	31088											
PIP4K2B	8396	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36935738	36935738	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	36935738	C	A	36935738	2	1	535	1	0	0	0	0	0	0	0	1	11944	581	21	4		4	PIP4K2B	17	36935738	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	29268515	36935738	44259472	46	31089											
WBP2	23558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73851365	73851365	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	73851365	T	A	73851365	3	1	535	1	0	0	0	0	1	0	0	0	17271	1609	56	5	803	5	WBP2	17	73851365	Missense_Mutation	SNP	T	TCGA-CJ-5684-01A-11D-1534-10	36915627	73851365	7343845	47	31090											
ASXL3	80816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	31320355	31320355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	31320355	C	A	31320355	3	1	535	1	0	0	0	0	1	0	0	0	1068	594	21	4	3029	4	ASXL3	18	31320355	Missense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10		31320355	46756893	48	31091											
ELAC1	55520	broad.mit.edu;ucsc.edu	37	18	48510776	48510776	+	Silent	SNP	C	A	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	48510776	A	A	48510776	2	1	535	1	0	0	0	0	0	0	0	1	5048	845	30	4		4	ELAC1	18	48510776	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	17190421	48510776	29566472	49	31092											
CCDC155	147872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49912528	49912528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	C	49912528	G	C	49912528	3	2	535	1	0	0	0	0	1	0	0	0	2790	991	35	4	1184	4	CCDC155	19	49912528	Missense_Mutation	SNP	G	TCGA-CJ-5684-01A-11D-1534-10		49912528	9216455	50	31093											
PEX26	55670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	18566476	18566476	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	C	18566476	G	C	18566476	3	2	535	1	0	0	0	0	1	0	0	0	11753	991	35	4	655	4	PEX26	22	18566476	Missense_Mutation	SNP	G	TCGA-CJ-5684-01A-11D-1534-10		18566476	32738090	51	31094											
SCUBE1	80274	broad.mit.edu;hgsc.bcm.edu	37	22	43614319	43614319	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	T	43614319	C	T	43614319	2	4	535	1	0	0	0	0	0	0	0	1	13957	680	24	2		2	SCUBE1	22	43614319	Silent	SNP	C	TCGA-CJ-5684-01A-11D-1534-10	25047843	43614319	7690247	52	31095											
IL9R	3581	broad.mit.edu	37	X	155233148	155233148	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5684-01A-11D-1534-10	TCGA-CJ-5684-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7	81ad0b3a-02ce-44e3-b84d-fd03c7792bcb	A	155233148	A	A	155233148	3	1	535	1	0	0	0	0	1	0	0	0	7715	477	17	4	187	4	IL9R	23	155233148	Missense_Mutation	SNP	C	TCGA-CJ-5684-01A-11D-1534-10		155233148	37412	53	31096											
VPS13D	55187	broad.mit.edu;ucsc.edu	37	1	12321995	12321995	+	Silent	SNP	G	T	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	12321995	T	T	12321995	2	4	536	1	0	0	0	0	0	0	0	1	17204	1132	40	4		4	VPS13D	1	12321995	Silent	SNP	G	TCGA-CJ-5686-01A-11D-1669-08		12321995	236928626	1	31097											
HECTD3	79654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	45473182	45473182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	45473182	C	A	45473182	3	1	536	1	0	0	0	0	1	0	0	0	7048	797	28	4	1227	4	HECTD3	1	45473182	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	33151187	45473182	203777439	2	31098											
CENPF	1063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	214818891	214818891	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	214818891	C	G	214818891	3	3	536	1	0	0	0	0	1	0	0	0	3233	913	32	4	6024	4	CENPF	1	214818891	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	169345709	214818891	34431730	3	31099											
ASAP2	8853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	9531296	9531296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	9531296	C	T	9531296	3	4	536	1	0	0	0	0	1	0	0	0	1011	652	23	1	2579	1	ASAP2	2	9531296	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08		9531296	233668077	4	31100											
EMILIN1	11117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27306232	27306232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	C	27306232	G	C	27306232	3	2	536	1	0	0	0	0	1	0	0	0	5095	1261	44	4	1807	4	EMILIN1	2	27306232	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	17774936	27306232	215893141	5	31101											
GPR45	11250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	105859391	105859391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	105859391	C	A	105859391	3	1	536	1	0	0	0	0	1	0	0	0	6703	594	21	4	1078	4	GPR45	2	105859391	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	78553159	105859391	137339982	6	31102											
RGPD4	285190	broad.mit.edu	37	2	108489172	108489172	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	C	108489172	C	C	108489172	3	2	536	1	0	0	0	0	1	0	0	0	13301	1174	41	4	4790	4	RGPD4	2	108489172	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	2629781	108489172	134710201	7	31103											
OSBPL6	114880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179203777	179203777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	179203777	A	G	179203777	3	3	536	1	0	0	0	0	1	0	0	0	11288	101	4	3	923	3	OSBPL6	2	179203777	Missense_Mutation	SNP	A	TCGA-CJ-5686-01A-11D-1669-08	70714605	179203777	63995596	8	31104											
CDK15	65061	broad.mit.edu;hgsc.bcm.edu	37	2	202700487	202700487	+	Splice_Site	SNP	G	G	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	202700487	G	T	202700487	5	4	536	1	0	0	0	0	0	0	1	0	3133	1275	44	4	725	4	CDK15	2	202700487	Splice_Site	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	23496710	202700487	40498886	9	31105											
SPHKAP	80309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	228882779	228882779	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	228882779	C	A	228882779	4	1	536	1	0	0	0	0	0	1	0	0	15060	864	30	4	2335	4	SPHKAP	2	228882779	Nonsense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	26182292	228882779	14316594	10	31106											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191520	10191520	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	-	10191520	G	-	10191520	7	5	536	1	0	1	0	1	0	0	0	0	17174	962	34	0	523	0	VHL	3	10191520	Frame_Shift_Del	DEL	G	TCGA-CJ-5686-01A-11D-1669-08		10191520	187830910	11	31107											
ATG7	10533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	11354777	11354777	+	Splice_Site	SNP	G	G	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	11354777	G	T	11354777	5	4	536	1	0	0	0	0	0	0	1	0	1101	1014	35	4	429	4	ATG7	3	11354777	Splice_Site	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	1163257	11354777	186667653	12	31108											
C3orf58	205428	broad.mit.edu	37	3	143691275	143691275	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	143691275	A	A	143691275	4	1	536	1	0	0	0	0	0	1	0	0	2238	893	31	4	103	4	C3orf58	3	143691275	Nonsense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	132336498	143691275	54331155	13	31109											
IGSF10	285313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	151154637	151154637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	151154637	G	A	151154637	3	1	536	1	0	0	0	0	1	0	0	0	7604	1294	45	2	163	2	IGSF10	3	151154637	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	7463362	151154637	46867793	14	31110											
KIAA1530	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	1348531	1348531	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	C	1348531	A	C	1348531	3	2	536	1	0	0	0	0	1	0	0	0	8248	247	9	5	961	5	KIAA1530	4	1348531	Missense_Mutation	SNP	A	TCGA-CJ-5686-01A-11D-1669-08		1348531	189805745	15	31111											
GRSF1	2926	broad.mit.edu	37	4	71690078	71690078	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	71690078	G	G	71690078	3	3	536	1	0	0	0	0	1	0	0	0	6816	506	18	4	45	4	GRSF1	4	71690078	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	70341547	71690078	119464198	16	31112											
THBS4	7060	hgsc.bcm.edu	37	5	79351734	79351734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	79351734	C	T	79351734	3	4	536	1	0	0	0	0	1	0	0	0	15868	855	30	2	429	2	THBS4	5	79351734	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08		79351734	101563526	17	31113											
WNT8A	7478	hgsc.bcm.edu	37	5	137426309	137426309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	137426309	C	A	137426309	3	1	536	1	0	0	0	0	1	0	0	0	17408	854	30	4	625	4	WNT8A	5	137426309	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	58074575	137426309	43488951	18	31114											
DBN1	1627	broad.mit.edu;hgsc.bcm.edu	37	5	176894482	176894482	+	Silent	SNP	C	C	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	176894482	C	G	176894482	2	3	536	1	0	0	0	0	0	0	0	1	4254	608	21	4		4	DBN1	5	176894482	Silent	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	39468173	176894482	4020778	19	31115											
TAP2	6891	broad.mit.edu;hgsc.bcm.edu	37	6	32805899	32805899	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	32805899	G	A	32805899	2	1	536	1	0	0	0	0	0	0	0	1	15563	1020	36	2		2	TAP2	6	32805899	Silent	SNP	G	TCGA-CJ-5686-01A-11D-1669-08		32805899	138309168	20	31116											
DNAH8	1769	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	38952015	38952015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	38952015	G	A	38952015	3	1	536	1	0	0	0	0	1	0	0	0	4609	1117	39	1	12664	1	DNAH8	6	38952015	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	6146116	38952015	132163052	21	31117											
ZNF318	24149	hgsc.bcm.edu;ucsc.edu	37	6	43307260	43307261	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	C	43307261	-	C	43307260	7	5	536	1	0	1	1	0	0	0	0	0	17848	262	10	0	2367	0	ZNF318	6	43307260	Frame_Shift_Ins	INS	-	TCGA-CJ-5686-01A-11D-1669-08	4355245	43307260	127807807	22	31118											
TDRD6	221400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46657639	46657639	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	46657639	C	G	46657639	3	3	536	1	0	0	0	0	1	0	0	0	15746	711	25	4	1776	4	TDRD6	6	46657639	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	3350379	46657639	124457428	23	31119											
RAB23	51715	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	57075110	57075110	+	Silent	SNP	T	T	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	57075110	T	A	57075110	2	1	536	1	0	0	0	0	0	0	0	1	12923	1799	63	5		5	RAB23	6	57075110	Silent	SNP	T	TCGA-CJ-5686-01A-11D-1669-08	10417471	57075110	114039957	24	31120											
EEF1A1	1915	broad.mit.edu	37	6	74228230	74228230	+	Silent	SNP	G	T	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	74228230	T	T	74228230	2	4	536	1	0	0	0	0	0	0	0	1	4925	1045	37	4		4	EEF1A1	6	74228230	Silent	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	17153120	74228230	96886837	25	31121											
SLC35A1	10559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	88210341	88210341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	88210341	A	G	88210341	3	3	536	1	0	0	0	0	1	0	0	0	14583	217	8	3	320	3	SLC35A1	6	88210341	Missense_Mutation	SNP	A	TCGA-CJ-5686-01A-11D-1669-08	13982111	88210341	82904726	26	31122											
TSPYL1	7259	hgsc.bcm.edu;ucsc.edu	37	6	116600703	116600703	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	-	116600703	C	-	116600703	7	5	536	1	0	1	0	1	0	0	0	0	16671	726	26	0	1026	0	TSPYL1	6	116600703	Frame_Shift_Del	DEL	C	TCGA-CJ-5686-01A-11D-1669-08	28390362	116600703	54514364	27	31123											
ANKMY2	57037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	16655424	16655424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	C	16655424	T	C	16655424	3	2	536	1	0	0	0	0	1	0	0	0	635	1609	56	3	873	3	ANKMY2	7	16655424	Missense_Mutation	SNP	T	TCGA-CJ-5686-01A-11D-1669-08		16655424	142483239	28	31124											
HERPUD2	64224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	35673462	35673462	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	35673462	C	T	35673462	5	4	536	1	0	0	0	0	0	0	1	0	7071	695	24	2	165	2	HERPUD2	7	35673462	Splice_Site	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	19018038	35673462	123465201	29	31125											
INHBA	3624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	41729694	41729694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	41729694	C	A	41729694	3	1	536	1	0	0	0	0	1	0	0	0	7748	739	26	4	449	4	INHBA	7	41729694	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	6056232	41729694	117408969	30	31126											
PILRB	29990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99956460	99956460	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	99956460	G	A	99956460	4	1	536	1	0	0	0	0	0	1	0	0	11933	1357	47	2	218	2	PILRB	7	99956460	Nonsense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	58226766	99956460	59182203	31	31127											
RHEB	6009	broad.mit.edu;hgsc.bcm.edu	37	7	151181869	151181869	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	151181869	A	T	151181869	3	4	536	1	0	0	0	0	1	0	0	0	13341	391	14	5	432	5	RHEB	7	151181869	Missense_Mutation	SNP	A	TCGA-CJ-5686-01A-11D-1669-08	51225409	151181869	7956794	32	31128											
BMP1	649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	22034151	22034151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	22034151	A	G	22034151	3	3	536	1	0	0	0	0	1	0	0	0	1456	449	16	3	553	3	BMP1	8	22034151	Missense_Mutation	SNP	A	TCGA-CJ-5686-01A-11D-1669-08		22034151	124329871	33	31129											
EXTL3	2137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	28574199	28574199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	28574199	G	A	28574199	3	1	536	1	0	0	0	0	1	0	0	0	5329	971	34	2	625	2	EXTL3	8	28574199	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	6540048	28574199	117789823	34	31130											
TMEM68	137695	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	56652730	56652730	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	C	56652730	T	C	56652730	2	2	536	1	0	0	0	0	0	0	0	1	16209	1567	55	3		3	TMEM68	8	56652730	Silent	SNP	T	TCGA-CJ-5686-01A-11D-1669-08	28078531	56652730	89711292	35	31131											
C8orf34	116328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	69621309	69621309	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	69621309	C	G	69621309	4	3	536	1	0	0	0	0	0	1	0	0	2424	838	29	4	1019	4	C8orf34	8	69621309	Nonsense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	12968579	69621309	76742713	36	31132											
ZFPM2	23414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	106810965	106810965	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	C	106810965	T	C	106810965	2	2	536	1	0	0	0	0	0	0	0	1	17670	1596	56	3		3	ZFPM2	8	106810965	Silent	SNP	T	TCGA-CJ-5686-01A-11D-1669-08	37189656	106810965	39553057	37	31133											
C9orf84	158401	broad.mit.edu;hgsc.bcm.edu	37	9	114484858	114484858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	114484858	C	A	114484858	3	1	536	1	0	0	0	0	1	0	0	0	2502	564	20	4	2620	4	C9orf84	9	114484858	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08		114484858	26728573	38	31134											
SLC25A25	114789	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130865982	130865982	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	130865982	T	A	130865982	3	1	536	1	0	0	0	0	1	0	0	0	14501	1522	53	5	1015	5	SLC25A25	9	130865982	Missense_Mutation	SNP	T	TCGA-CJ-5686-01A-11D-1669-08	16381124	130865982	10347449	39	31135											
DDX31	64794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	135470291	135470291	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	135470291	C	G	135470291	3	3	536	1	0	0	0	0	1	0	0	0	4358	681	24	4	41	4	DDX31	9	135470291	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	4604309	135470291	5743140	40	31136											
SSNA1	8636	broad.mit.edu;hgsc.bcm.edu	37	9	140083619	140083619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	140083619	G	A	140083619	3	1	536	1	0	0	0	0	1	0	0	0	15199	943	33	2	160	2	SSNA1	9	140083619	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	4613328	140083619	1129812	41	31137											
CSRP3	8048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	19213960	19213960	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	19213960	G	A	19213960	2	1	536	1	0	0	0	0	0	0	0	1	3971	987	35	2		2	CSRP3	11	19213960	Silent	SNP	G	TCGA-CJ-5686-01A-11D-1669-08		19213960	115792556	42	31138			1	63		2	2	14	G		2.89755e-05
CSRP3	8048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	19213973	19213973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	19213973	G	T	19213973	3	4	536	1	0	0	0	0	1	0	0	0	3971	1319	46	4	581	4	CSRP3	11	19213973	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	13	19213973	115792543	43	31139			1	63		2	2	14	G		2.89755e-05
DAK	26007	hgsc.bcm.edu;ucsc.edu	37	11	61105442	61105442	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	-	61105442	T	-	61105442	7	5	536	1	0	1	0	1	0	0	0	0	4230	1567	55	0	39	0	DAK	11	61105442	Frame_Shift_Del	DEL	T	TCGA-CJ-5686-01A-11D-1669-08	41891469	61105442	73901074	44	31140											
LRRN4CL	221091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62455461	62455461	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	62455461	C	G	62455461	3	3	536	1	0	0	0	0	1	0	0	0	9045	623	22	4	200	4	LRRN4CL	11	62455461	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	1350019	62455461	72551055	45	31141											
CCDC82	79780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	96098194	96098194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	96098194	A	G	96098194	3	3	536	1	0	0	0	0	1	0	0	0	2858	391	14	3	316	3	CCDC82	11	96098194	Missense_Mutation	SNP	A	TCGA-CJ-5686-01A-11D-1669-08	33642733	96098194	38908322	46	31142											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108199913	108199913	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	108199913	A	T	108199913	4	4	536	1	0	0	0	0	0	1	0	0	1109	64	3	5	7445	5	ATM	11	108199913	Nonsense_Mutation	SNP	A	TCGA-CJ-5686-01A-11D-1669-08	12101719	108199913	26806603	47	31143											
RAPGEF3	10411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48143587	48143587	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	48143587	C	T	48143587	2	4	536	1	0	0	0	0	0	0	0	1	13058	610	22	2		2	RAPGEF3	12	48143587	Silent	SNP	C	TCGA-CJ-5686-01A-11D-1669-08		48143587	85708308	48	31144											
AAAS	8086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53702266	53702266	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	53702266	C	A	53702266	2	1	536	1	0	0	0	0	0	0	0	1	8	581	21	4		4	AAAS	12	53702266	Silent	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	5558679	53702266	80149629	49	31145											
FZD10	11211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	130648324	130648324	+	Silent	SNP	C	C	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	130648324	C	T	130648324	2	4	536	1	0	0	0	0	0	0	0	1	6136	845	30	2		2	FZD10	12	130648324	Silent	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	76946058	130648324	3203571	50	31146											
SACS	26278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	23904812	23904812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	23904812	C	A	23904812	3	1	536	1	0	0	0	0	1	0	0	0	13817	856	30	4	540	4	SACS	13	23904812	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08		23904812	91265066	51	31147											
FGF14	2259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	103053874	103053874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	103053874	T	A	103053874	3	1	536	1	0	0	0	0	1	0	0	0	5850	1464	51	5	820	5	FGF14	13	103053874	Missense_Mutation	SNP	T	TCGA-CJ-5686-01A-11D-1669-08	79149062	103053874	12116004	52	31148											
FERMT2	10979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	53385908	53385908	+	Silent	SNP	A	A	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	53385908	A	G	53385908	2	3	536	1	0	0	0	0	0	0	0	1	5825	224	8	3		3	FERMT2	14	53385908	Silent	SNP	A	TCGA-CJ-5686-01A-11D-1669-08		53385908	53963632	53	31149											
TBPL2	387332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55895569	55895569	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	55895569	G	A	55895569	2	1	536	1	0	0	0	0	0	0	0	1	15658	1335	47	2		2	TBPL2	14	55895569	Silent	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	2509661	55895569	51453971	54	31150											
PCSK6	5046	broad.mit.edu;ucsc.edu	37	15	101971643	101971643	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	101971643	A	A	101971643	3	1	536	1	0	0	0	0	1	0	0	0	11611	710	25	4	2925	4	PCSK6	15	101971643	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08		101971643	559749	55	31151											
SPG7	6687	hgsc.bcm.edu;ucsc.edu	37	16	89616909	89616910	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	89616910	-	A	89616909	7	5	536	1	0	1	1	0	0	0	0	0	15056	581	21	0	1871	0	SPG7	16	89616909	Frame_Shift_Ins	INS	-	TCGA-CJ-5686-01A-11D-1669-08		89616909	737844	56	31152											
PITPNM3	83394	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	6386893	6386893	+	Silent	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	6386893	G	A	6386893	2	1	536	1	0	0	0	0	0	0	0	1	11959	1277	45	2		2	PITPNM3	17	6386893	Silent	SNP	G	TCGA-CJ-5686-01A-11D-1669-08		6386893	74808317	57	31153											
CDK3	1018	broad.mit.edu;hgsc.bcm.edu	37	17	73998205	73998205	+	Silent	SNP	C	C	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	73998205	C	A	73998205	2	1	536	1	0	0	0	0	0	0	0	1	3142	842	30	4		4	CDK3	17	73998205	Silent	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	67611312	73998205	7197005	58	31154											
ALPK2	115701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	56205356	56205356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	56205356	G	A	56205356	3	1	536	1	0	0	0	0	1	0	0	0	545	1377	48	2	4485	2	ALPK2	18	56205356	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08		56205356	21871892	59	31155											
FBXW9	84261	broad.mit.edu;hgsc.bcm.edu	37	19	12807200	12807200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	A	12807200	G	A	12807200	3	1	536	1	0	0	0	0	1	0	0	0	5778	1057	37	1	1220	1	FBXW9	19	12807200	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08		12807200	46321783	60	31156											
HAUS8	93323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17169444	17169444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	17169444	T	G	17169444	3	3	536	1	0	0	0	0	1	0	0	0	6979	1609	56	5	688	5	HAUS8	19	17169444	Missense_Mutation	SNP	T	TCGA-CJ-5686-01A-11D-1669-08	4362244	17169444	41959539	61	31157											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39008078	39008078	+	Silent	SNP	G	G	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	39008078	G	T	39008078	2	4	536	1	0	0	0	0	0	0	0	1	13781	1190	42	4		4	RYR1	19	39008078	Silent	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	21838634	39008078	20120905	62	31158											
EGLN2	112398	hgsc.bcm.edu;ucsc.edu	37	19	41306619	41306619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	C	41306619	T	C	41306619	3	2	536	1	0	0	0	0	1	0	0	0	4971	1522	53	3	144	3	EGLN2	19	41306619	Missense_Mutation	SNP	T	TCGA-CJ-5686-01A-11D-1669-08	2298541	41306619	17822364	63	31159											
ZNF808	388558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53058493	53058493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	53058493	G	T	53058493	3	4	536	1	0	0	0	0	1	0	0	0	18185	1357	47	4	2334	4	ZNF808	19	53058493	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	11751874	53058493	6070490	64	31160											
CDC45	8318	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	19467681	19467681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	19467681	A	T	19467681	3	4	536	1	0	0	0	0	1	0	0	0	3083	318	11	5	58	5	CDC45	22	19467681	Missense_Mutation	SNP	A	TCGA-CJ-5686-01A-11D-1669-08		19467681	31836885	65	31161											
GTSE1	51512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	46708174	46708174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	T	46708174	G	T	46708174	3	4	536	1	0	0	0	0	1	0	0	0	6892	1203	42	4	913	4	GTSE1	22	46708174	Missense_Mutation	SNP	G	TCGA-CJ-5686-01A-11D-1669-08	27240493	46708174	4596392	66	31162											
TAF1	6872	broad.mit.edu;hgsc.bcm.edu	37	X	70602417	70602417	+	Silent	SNP	T	T	C	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	C	70602417	T	C	70602417	2	2	536	1	0	0	0	0	0	0	0	1	15525	1509	53	3		3	TAF1	23	70602417	Silent	SNP	T	TCGA-CJ-5686-01A-11D-1669-08		70602417	84668143	67	31163											
BRWD3	254065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	79991541	79991541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	G	79991541	C	G	79991541	3	3	536	1	0	0	0	0	1	0	0	0	1528	507	18	4	4680	4	BRWD3	23	79991541	Missense_Mutation	SNP	C	TCGA-CJ-5686-01A-11D-1669-08	9389124	79991541	75279019	68	31164											
IRS4	8471	hgsc.bcm.edu;ucsc.edu	37	X	107976255	107976258	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-CJ-5686-01A-11D-1669-08	TCGA-CJ-5686-11A-01D-1669-08	CTGT	CTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	695e2a72-6b97-4fa1-9f57-d7c6e10438ee	643a505e-ab7b-4885-a5ba-ed890cf80da8	-	107976258	CTGT	-	107976255	7	5	536	1	0	1	0	1	0	0	0	0	7849	797	28	0	457	0	IRS4	23	107976255	Frame_Shift_Del	DEL	CTGT	TCGA-CJ-5686-01A-11D-1669-08	27984714	107976255	47294305	69	31165											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11210198	11210198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	11210198	C	T	11210198	3	4	537	1	0	0	0	0	1	0	0	0	9961	797	28	2	3206	2	MTOR	1	11210198	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08		11210198	238040423	1	31166											
PHACTR4	65979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	28800469	28800469	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	28800469	C	A	28800469	2	1	537	1	0	0	0	0	0	0	0	1	11819	668	24	4		4	PHACTR4	1	28800469	Silent	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	17590271	28800469	220450152	2	31167											
PPIE	10450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40209514	40209514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	40209514	G	T	40209514	3	4	537	1	0	0	0	0	1	0	0	0	12332	1357	47	4	324	4	PPIE	1	40209514	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	11409045	40209514	209041107	3	31168											
PCSK9	255738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55509579	55509579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	55509579	T	A	55509579	3	1	537	1	0	0	0	0	1	0	0	0	11613	1667	58	5	277	5	PCSK9	1	55509579	Missense_Mutation	SNP	T	TCGA-CJ-6027-01A-11D-1669-08	15300065	55509579	193741042	4	31169	384	2									
PCSK9	255738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55509580	55509580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	55509580	C	T	55509580	3	4	537	1	0	0	0	0	1	0	0	0	11613	838	29	2	278	2	PCSK9	1	55509580	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	1	55509580	193741041	5	31170	384	2									
INADL	10207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62237112	62237112	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	62237112	A	G	62237112	2	3	537	1	0	0	0	0	0	0	0	1	7738	330	12	3		3	INADL	1	62237112	Silent	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	6727532	62237112	187013509	6	31171											
IL23R	149233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67705899	67705899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	67705899	C	G	67705899	3	3	537	1	0	0	0	0	1	0	0	0	7683	874	31	4	1113	4	IL23R	1	67705899	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	5468787	67705899	181544722	7	31172											
SH3GLB1	51100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	87200796	87200796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	87200796	A	T	87200796	3	4	537	1	0	0	0	0	1	0	0	0	14266	246	9	5	721	5	SH3GLB1	1	87200796	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	19494897	87200796	162049825	8	31173											
PKN2	5586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	89236095	89236095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	89236095	G	T	89236095	3	4	537	1	0	0	0	0	1	0	0	0	11987	1029	36	4	579	4	PKN2	1	89236095	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	2035299	89236095	160014526	9	31174											
CD101	9398	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	117568204	117568204	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	117568204	C	T	117568204	2	4	537	1	0	0	0	0	0	0	0	1	2964	718	25	2		2	CD101	1	117568204	Silent	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	28332109	117568204	131682417	10	31175											
S100A7A	338324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153391770	153391770	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	C	153391770	T	C	153391770	2	2	537	1	0	0	0	0	0	0	0	1	13797	1567	55	3		3	S100A7A	1	153391770	Silent	SNP	T	TCGA-CJ-6027-01A-11D-1669-08	35823566	153391770	95858851	11	31176											
LAMC2	3918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183177097	183177097	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	183177097	T	A	183177097	3	1	537	1	0	0	0	0	1	0	0	0	8622	1551	54	5	167	5	LAMC2	1	183177097	Missense_Mutation	SNP	T	TCGA-CJ-6027-01A-11D-1669-08	29785327	183177097	66073524	12	31177	385	2									
LAMC2	3918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183177098	183177098	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	183177098	C	A	183177098	2	1	537	1	0	0	0	0	0	0	0	1	8622	813	29	4		4	LAMC2	1	183177098	Silent	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	1	183177098	66073523	13	31178	385	2									
LMOD1	25802	broad.mit.edu	37	1	201869657	201869657	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	201869657	A	A	201869657	3	1	537	1	0	0	0	0	1	0	0	0	8863	1115	39	1	1326	1	LMOD1	1	201869657	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	18692559	201869657	47380964	14	31179											
CNTN2	6900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205035032	205035032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	205035032	T	A	205035032	3	1	537	1	0	0	0	0	1	0	0	0	3643	1667	58	5	1861	5	CNTN2	1	205035032	Missense_Mutation	SNP	T	TCGA-CJ-6027-01A-11D-1669-08	3165375	205035032	44215589	15	31180											
KLF11	8462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	10186515	10186515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	C	10186515	T	C	10186515	3	2	537	1	0	0	0	0	1	0	0	0	8346	1522	53	3	287	3	KLF11	2	10186515	Missense_Mutation	SNP	T	TCGA-CJ-6027-01A-11D-1669-08		10186515	233012858	16	31181											
KHK	3795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27317803	27317803	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	27317803	G	A	27317803	5	1	537	1	0	0	0	0	0	0	1	0	8156	1159	40	1	494	1	KHK	2	27317803	Splice_Site	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	17131288	27317803	215881570	17	31182											
ABCG8	64241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44073354	44073354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	44073354	A	G	44073354	3	3	537	1	0	0	0	0	1	0	0	0	72	275	10	3	236	3	ABCG8	2	44073354	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	16755551	44073354	199126019	18	31183											
NBEAL1	65065	broad.mit.edu;ucsc.edu	37	2	204045216	204045217	+	Frame_Shift_Del	DEL	GT	-	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	-	204045217	-	-	204045216	7	5	537	1	0	1	0	1	0	0	0	0	10195	1020	36	0	6651	0	NBEAL1	2	204045216	Frame_Shift_Del	DEL	GT	TCGA-CJ-6027-01A-11D-1669-08	159971862	204045216	39154157	19	31184											
SMARCAL1	50485	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	217342998	217342998	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	217342998	A	G	217342998	2	3	537	1	0	0	0	0	0	0	0	1	14786	175	7	3		3	SMARCAL1	2	217342998	Silent	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	13297782	217342998	25856375	20	31185											
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	C	rs5030807	bycluster	TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	C	10183797	T	C	10183797	3	2	537	1	0	0	0	0	1	0	0	0	17174	1551	54	3	268	3	VHL	3	10183797	Missense_Mutation	SNP	T	TCGA-CJ-6027-01A-11D-1669-08		10183797	187838633	21	31186											
GATA2	2624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128200752	128200753	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	128200753	-	T	128200752	7	5	537	1	0	1	1	0	0	0	0	0	6261	98	4	0	397	0	GATA2	3	128200752	Frame_Shift_Ins	INS	-	TCGA-CJ-6027-01A-11D-1669-08	118016955	128200752	69821678	22	31187											
APBB2	323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	41015685	41015685	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	41015685	G	A	41015685	2	1	537	1	0	0	0	0	0	0	0	1	761	1164	41	2		2	APBB2	4	41015685	Silent	SNP	G	TCGA-CJ-6027-01A-11D-1669-08		41015685	150138591	23	31188											
GABRB1	2560	hgsc.bcm.edu;ucsc.edu	37	4	47408773	47408774	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	-	47408774	AA	-	47408773	7	5	537	1	0	1	0	1	0	0	0	0	6173	131	5	0	940	0	GABRB1	4	47408773	Frame_Shift_Del	DEL	AA	TCGA-CJ-6027-01A-11D-1669-08	6393088	47408773	143745503	24	31189											
SCARB2	950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77084506	77084506	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	77084506	G	A	77084506	4	1	537	1	0	0	0	0	0	1	0	0	13895	1066	37	1	174	1	SCARB2	4	77084506	Nonsense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	29675733	77084506	114069770	25	31190											
GPRIN3	285513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	90170546	90170546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	90170546	G	T	90170546	3	4	537	1	0	0	0	0	1	0	0	0	6738	1029	36	4	1618	4	GPRIN3	4	90170546	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	13086040	90170546	100983730	26	31191											
HHIP	64399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	145635414	145635414	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	C	145635414	T	C	145635414	2	2	537	1	0	0	0	0	0	0	0	1	7099	1635	57	3		3	HHIP	4	145635414	Silent	SNP	T	TCGA-CJ-6027-01A-11D-1669-08	55464868	145635414	45518862	27	31192											
FNIP2	57600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	159790324	159790324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	159790324	G	A	159790324	3	1	537	1	0	0	0	0	1	0	0	0	5983	1175	41	2	2586	2	FNIP2	4	159790324	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	14154910	159790324	31363952	28	31193											
C4orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	184618916	184618916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	184618916	A	G	184618916	3	3	537	1	0	0	0	0	1	0	0	0	2272	449	16	3	2873	3	C4orf41	4	184618916	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	24828592	184618916	6535360	29	31194											
ZFR	51663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32390443	32390443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	C	32390443	G	C	32390443	3	2	537	1	0	0	0	0	1	0	0	0	17671	1174	41	4	1180	4	ZFR	5	32390443	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08		32390443	148524817	30	31195											
RASGRF2	5924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	80508333	80508333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	80508333	G	A	80508333	3	1	537	1	0	0	0	0	1	0	0	0	13086	942	33	2	3395	2	RASGRF2	5	80508333	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	48117890	80508333	100406927	31	31196											
PPIP5K2	23262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	102502993	102502993	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	102502993	C	G	102502993	3	3	537	1	0	0	0	0	1	0	0	0	12343	816	29	4	2097	4	PPIP5K2	5	102502993	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	21994660	102502993	78412267	32	31197											
SLC22A4	6583	broad.mit.edu	37	5	131630693	131630693	+	Silent	SNP	C	T	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	131630693	T	T	131630693	2	4	537	1	0	0	0	0	0	0	0	1	14469	871	31	1		1	SLC22A4	5	131630693	Silent	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	29127700	131630693	49284567	33	31198											
CDC23	8697	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137542357	137542357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	137542357	A	G	137542357	3	3	537	1	0	0	0	0	1	0	0	0	3063	217	8	3	1598	3	CDC23	5	137542357	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	5911664	137542357	43372903	34	31199											
PCDHGB1	56104	broad.mit.edu;ucsc.edu	37	5	140732064	140732064	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	C	140732064	C	C	140732064	3	2	537	1	0	0	0	0	1	0	0	0	11569	449	16	5	2239	5	PCDHGB1	5	140732064	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	3189707	140732064	40183196	35	31200											
NEDD9	4739	broad.mit.edu;ucsc.edu	37	6	11213548	11213548	+	Missense_Mutation	SNP	A	G	G	rs111447705		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	11213548	G	G	11213548	3	3	537	1	0	0	0	0	1	0	0	0	10320	101	4	3	2173	3	NEDD9	6	11213548	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08		11213548	159901519	36	31201											
BRPF3	27154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36177669	36177669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	36177669	G	A	36177669	3	1	537	1	0	0	0	0	1	0	0	0	1523	1087	38	1	1857	1	BRPF3	6	36177669	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	24964121	36177669	134937398	37	31202											
AVL9	23080	hgsc.bcm.edu;ucsc.edu	37	7	32584314	32584314	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	-	32584314	T	-	32584314	7	5	537	1	0	1	0	1	0	0	0	0	1228	1725	60	0	233	0	AVL9	7	32584314	Frame_Shift_Del	DEL	T	TCGA-CJ-6027-01A-11D-1669-08		32584314	126554349	38	31203											
DPY19L1	23333	broad.mit.edu;ucsc.edu	37	7	35057549	35057549	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	35057549	G	G	35057549	3	3	537	1	0	0	0	0	1	0	0	0	4742	536	19	4	1970	4	DPY19L1	7	35057549	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	2473235	35057549	124081114	39	31204											
PKD1L1	168507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	47873983	47873983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	47873983	C	A	47873983	3	1	537	1	0	0	0	0	1	0	0	0	11971	521	18	4	2493	4	PKD1L1	7	47873983	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	12816434	47873983	111264680	40	31205											
PAX4	5078	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127252031	127252031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	127252031	G	T	127252031	3	4	537	1	0	0	0	0	1	0	0	0	11488	1261	44	4	328	4	PAX4	7	127252031	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	79378048	127252031	31886632	41	31206											
PLEC	5339	broad.mit.edu;hgsc.bcm.edu	37	8	144999885	144999885	+	Silent	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	144999885	C	G	144999885	2	3	537	1	0	0	0	0	0	0	0	1	12059	610	22	4		4	PLEC	8	144999885	Silent	SNP	C	TCGA-CJ-6027-01A-11D-1669-08		144999885	1364137	42	31207											
IARS	3376	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95021264	95021264	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	95021264	A	T	95021264	3	4	537	1	0	0	0	0	1	0	0	0	7480	304	11	5	1964	5	IARS	9	95021264	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08		95021264	46192167	43	31208											
NR4A3	8013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	102590586	102590586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	102590586	G	T	102590586	4	4	537	1	0	0	0	0	0	1	0	0	10641	1175	41	4	301	4	NR4A3	9	102590586	Nonsense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	7569322	102590586	38622845	44	31209											
NEBL	10529	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	21124510	21124510	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	21124510	C	A	21124510	4	1	537	1	0	0	0	0	0	1	0	0	10310	690	24	4	1723	4	NEBL	10	21124510	Nonsense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08		21124510	114410237	45	31210											
OPN4	94233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	88418429	88418429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	88418429	C	A	88418429	3	1	537	1	0	0	0	0	1	0	0	0	10889	507	18	4	664	4	OPN4	10	88418429	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	67293919	88418429	47116318	46	31211											
TECTB	6975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	114053509	114053509	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	114053509	C	G	114053509	3	3	537	1	0	0	0	0	1	0	0	0	15760	855	30	4	515	4	TECTB	10	114053509	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	25635080	114053509	21481238	47	31212											
B3GAT3	26229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62384532	62384532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	62384532	G	A	62384532	3	1	537	1	0	0	0	0	1	0	0	0	1255	1348	47	2	474	2	B3GAT3	11	62384532	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08		62384532	72621984	48	31213											
TSGA10IP	254187	broad.mit.edu	37	11	65715209	65715209	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	65715209	T	T	65715209	4	4	537	1	0	0	0	0	0	1	0	0	16630	760	27	1	923	1	TSGA10IP	11	65715209	Nonsense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	3330677	65715209	69291307	49	31214											
YIF1A	10897	hgsc.bcm.edu;ucsc.edu	37	11	66052992	66052996	+	Frame_Shift_Del	DEL	CACCT	CACCT	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	CACCT	CACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	-	66052996	CACCT	-	66052992	7	5	537	1	0	1	0	1	0	0	0	0	17487	697	25	0	392	0	YIF1A	11	66052992	Frame_Shift_Del	DEL	CACCT	TCGA-CJ-6027-01A-11D-1669-08	337783	66052992	68953524	50	31215											
C2CD3	26005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	73753116	73753116	+	Silent	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	73753116	G	T	73753116	2	4	537	1	0	0	0	0	0	0	0	1	2156	1335	47	4		4	C2CD3	11	73753116	Silent	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	7700124	73753116	61253400	51	31216											
ODZ4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	78369131	78369131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	78369131	A	G	78369131	3	3	537	1	0	0	0	0	1	0	0	0	10844	217	8	3	31	3	ODZ4	11	78369131	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	4616015	78369131	56637385	52	31217											
RBM7	10179	broad.mit.edu;hgsc.bcm.edu	37	11	114272549	114272549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	C	114272549	T	C	114272549	3	2	537	1	0	0	0	0	1	0	0	0	13158	1754	61	3	232	3	RBM7	11	114272549	Missense_Mutation	SNP	T	TCGA-CJ-6027-01A-11D-1669-08	35903418	114272549	20733967	53	31218											
LACRT	90070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55026040	55026040	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	55026040	C	A	55026040	4	1	537	1	0	0	0	0	0	1	0	0	8603	864	30	4	190	4	LACRT	12	55026040	Nonsense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08		55026040	78825855	54	31219											
ATP5B	506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57036241	57036241	+	Splice_Site	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	57036241	C	A	57036241	5	1	537	1	0	0	0	0	0	0	1	0	1148	521	18	4	530	4	ATP5B	12	57036241	Splice_Site	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	2010201	57036241	76815654	55	31220											
INTS6	26512	broad.mit.edu;hgsc.bcm.edu	37	13	51969612	51969612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	51969612	A	G	51969612	3	3	537	1	0	0	0	0	1	0	0	0	7789	372	13	3	2282	3	INTS6	13	51969612	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08		51969612	63200266	56	31221											
BAZ1A	11177	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	35264070	35264070	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	35264070	C	A	35264070	2	1	537	1	0	0	0	0	0	0	0	1	1329	813	29	4		4	BAZ1A	14	35264070	Silent	SNP	C	TCGA-CJ-6027-01A-11D-1669-08		35264070	72085470	57	31222											
KIAA0586	9786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58932590	58932590	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	58932590	C	G	58932590	3	3	537	1	0	0	0	0	1	0	0	0	8193	912	32	4	1923	4	KIAA0586	14	58932590	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	23668520	58932590	48416950	58	31223											
BDKRB2	624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	96703508	96703508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	96703508	G	T	96703508	3	4	537	1	0	0	0	0	1	0	0	0	1393	1203	42	4	66	4	BDKRB2	14	96703508	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	37770918	96703508	10646032	59	31224											
PAPOLA	10914	broad.mit.edu;ucsc.edu	37	14	97022676	97022676	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	97022676	G	G	97022676	3	3	537	1	0	0	0	0	1	0	0	0	11436	391	14	3	2004	3	PAPOLA	14	97022676	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	319168	97022676	10326864	60	31225											
PLA2G4D	283748	broad.mit.edu;ucsc.edu	37	15	42379578	42379578	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	42379578	G	G	42379578	3	3	537	1	0	0	0	0	1	0	0	0	12011	43	2	3	2353	3	PLA2G4D	15	42379578	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08		42379578	60151814	61	31226											
DET1	55070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89070834	89070834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	89070834	G	A	89070834	3	1	537	1	0	0	0	0	1	0	0	0	4452	1087	38	1	397	1	DET1	15	89070834	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	46691256	89070834	13460558	62	31227											
MMP2	4313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	55519326	55519326	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	55519326	G	A	55519326	2	1	537	1	0	0	0	0	0	0	0	1	9665	1339	47	2		2	MMP2	16	55519326	Silent	SNP	G	TCGA-CJ-6027-01A-11D-1669-08		55519326	34835427	63	31228											
ZPBP2	124626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38031594	38031594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	38031594	G	A	38031594	3	1	537	1	0	0	0	0	1	0	0	0	18232	1377	48	2	822	2	ZPBP2	17	38031594	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08		38031594	43163616	64	31229											
GAA	2548	broad.mit.edu;hgsc.bcm.edu	37	17	78090845	78090845	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	78090845	C	T	78090845	2	4	537	1	0	0	0	0	0	0	0	1	6154	842	30	2		2	GAA	17	78090845	Silent	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	40059251	78090845	3104365	65	31230											
ATP8B3	148229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1811645	1811645	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	1811645	A	T	1811645	3	4	537	1	0	0	0	0	1	0	0	0	1196	304	11	5	3971	5	ATP8B3	19	1811645	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08		1811645	57317338	66	31231											
ACSBG2	81616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6182803	6182803	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	6182803	C	T	6182803	2	4	537	1	0	0	0	0	0	0	0	1	174	900	32	2		2	ACSBG2	19	6182803	Silent	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	4371158	6182803	52946180	67	31232											
ACTL9	284382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8807932	8807932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	8807932	G	A	8807932	3	1	537	1	0	0	0	0	1	0	0	0	203	1203	42	2	134	2	ACTL9	19	8807932	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	2625129	8807932	50321051	68	31233											
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9075200	9075200	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	9075200	A	T	9075200	3	4	537	1	0	0	0	0	1	0	0	0	9980	243	9	5	31605	5	MUC16	19	9075200	Missense_Mutation	SNP	A	TCGA-CJ-6027-01A-11D-1669-08	267268	9075200	50053783	69	31234											
OR7G3	390883	hgsc.bcm.edu	37	19	9236698	9236699	+	Frame_Shift_Ins	INS	-	-	ATGGT	rs111867493	bycluster;by1000genomes	TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	ATGGT	9236699	-	ATGGT	9236698	7	5	537	1	0	1	1	0	0	0	0	0	11231	942	33	0	12	0	OR7G3	19	9236698	Frame_Shift_Ins	INS	-	TCGA-CJ-6027-01A-11D-1669-08	161498	9236698	49892285	70	31235											
SPTBN4	57731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41066216	41066216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	G	41066216	C	G	41066216	3	3	537	1	0	0	0	0	1	0	0	0	15133	478	17	4	5924	4	SPTBN4	19	41066216	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	31829518	41066216	18062767	71	31236											
RABAC1	10567	broad.mit.edu;ucsc.edu	37	19	42462491	42462491	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	42462491	T	T	42462491	3	4	537	1	0	0	0	0	1	0	0	0	12973	739	26	2	255	2	RABAC1	19	42462491	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	1396275	42462491	16666492	72	31237											
ZNF45	7596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44418082	44418082	+	Silent	SNP	G	G	A	rs142171881	bycluster;byfrequency;by1000genomes	TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	44418082	G	A	44418082	2	1	537	1	0	0	0	0	0	0	0	1	17933	1079	38	1		1	ZNF45	19	44418082	Silent	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	1955591	44418082	14710901	73	31238											
ZSCAN1	284312	broad.mit.edu;hgsc.bcm.edu	37	19	58549265	58549265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	58549265	G	T	58549265	4	4	537	1	0	0	0	0	0	1	0	0	18238	1291	45	4	63	4	ZSCAN1	19	58549265	Nonsense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	14131183	58549265	579718	74	31239											
PROCR	10544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33763988	33763988	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	33763988	T	A	33763988	3	1	537	1	0	0	0	0	1	0	0	0	12557	1580	55	5	350	5	PROCR	20	33763988	Missense_Mutation	SNP	T	TCGA-CJ-6027-01A-11D-1669-08		33763988	29261532	75	31240											
FAM83C	128876	hgsc.bcm.edu;ucsc.edu	37	20	33875097	33875099	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	-	33875099	CTT	-	33875097	7	5	537	1	0	1	0	1	0	0	0	0	5642	680	24	0	762	0	FAM83C	20	33875097	In_Frame_Del	DEL	CTT	TCGA-CJ-6027-01A-11D-1669-08	111109	33875097	29150423	76	31241											
C20orf24	55969	broad.mit.edu;ucsc.edu	37	20	35238021	35238021	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	35238021	T	T	35238021	3	4	537	1	0	0	0	0	1	0	0	0	2107	710	25	2	246	2	C20orf24	20	35238021	Missense_Mutation	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	1362924	35238021	27787499	77	31242											
C20orf165	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44515557	44515557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	44515557	G	A	44515557	3	1	537	1	0	0	0	0	1	0	0	0	2096	1319	46	2	404	2	C20orf165	20	44515557	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	9277536	44515557	18509963	78	31243											
MORC3	23515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37736413	37736413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	37736413	G	A	37736413	3	1	537	1	0	0	0	0	1	0	0	0	9710	1116	39	1	1529	1	MORC3	21	37736413	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08		37736413	10393482	79	31244											
NYX	60506	broad.mit.edu	37	X	41333572	41333572	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	41333572	A	A	41333572	3	1	537	1	0	0	0	0	1	0	0	0	10804	971	34	2	872	2	NYX	23	41333572	Missense_Mutation	SNP	G	TCGA-CJ-6027-01A-11D-1669-08		41333572	113936988	80	31245											
HDAC6	10013	hgsc.bcm.edu;ucsc.edu	37	X	48674608	48674608	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	T	48674608	C	T	48674608	2	4	537	1	0	0	0	0	0	0	0	1	7018	726	26	2		2	HDAC6	23	48674608	Silent	SNP	C	TCGA-CJ-6027-01A-11D-1669-08	7341036	48674608	106595952	81	31246											
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76952169	76952169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	76952169	T	A	76952169	3	1	537	1	0	0	0	0	1	0	0	0	1208	1406	49	5	7336	5	ATRX	23	76952169	Missense_Mutation	SNP	T	TCGA-CJ-6027-01A-11D-1669-08	28277561	76952169	78318391	82	31247											
AIFM1	9131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129289191	129289191	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	A	129289191	G	A	129289191	2	1	537	1	0	0	0	0	0	0	0	1	426	1306	46	2		2	AIFM1	23	129289191	Silent	SNP	G	TCGA-CJ-6027-01A-11D-1669-08	52337022	129289191	25981369	83	31248											
CHIA	27159	broad.mit.edu;hgsc.bcm.edu	37	1	111857933	111857933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	C	111857933	T	C	111857933	3	2	538	1	0	0	0	0	1	0	0	0	3344	1783	62	3	374	3	CHIA	1	111857933	Missense_Mutation	SNP	T	TCGA-CJ-6028-01A-11D-1669-08		111857933	137392688	1	31249											
ST7L	54879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	113124710	113124710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	113124710	G	A	113124710	3	1	538	1	0	0	0	0	1	0	0	0	15242	1174	41	2	821	2	ST7L	1	113124710	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	1266777	113124710	136125911	2	31250	386	2									
ST7L	54879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	113124711	113124711	+	Silent	SNP	A	A	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	113124711	A	T	113124711	2	4	538	1	0	0	0	0	0	0	0	1	15242	291	11	5		5	ST7L	1	113124711	Silent	SNP	A	TCGA-CJ-6028-01A-11D-1669-08	1	113124711	136125910	3	31251	386	2									
DCLRE1B	64858	broad.mit.edu;hgsc.bcm.edu	37	1	114454408	114454408	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	C	114454408	G	C	114454408	3	2	538	1	0	0	0	0	1	0	0	0	4297	962	34	4	1208	4	DCLRE1B	1	114454408	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	1329697	114454408	134796213	4	31252											
FCRL1	115350	broad.mit.edu	37	1	157789883	157789883	+	Translation_Start_Site	SNP	C	T	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	157789883	T	T	157789883	1	4	538	1	0	0	0	0	0	0	0	0	5801	522	18	2		2	FCRL1	1	157789883	Translation_Start_Site	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	43335475	157789883	91460738	5	31253											
CD1C	911	hgsc.bcm.edu;ucsc.edu	37	1	158262061	158262061	+	Silent	SNP	C	C	T	rs142044323	bycluster;byfrequency;by1000genomes	TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	158262061	C	T	158262061	2	4	538	1	0	0	0	0	0	0	0	1	2978	755	27	1		1	CD1C	1	158262061	Silent	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	472178	158262061	90988560	6	31254											
OR10K2	391107	broad.mit.edu;hgsc.bcm.edu	37	1	158390417	158390417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	158390417	C	A	158390417	3	1	538	1	0	0	0	0	1	0	0	0	10921	912	32	4	700	4	OR10K2	1	158390417	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	128356	158390417	90860204	7	31255											
FAM5C	339479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	190068174	190068174	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	190068174	C	T	190068174	2	4	538	1	0	0	0	0	0	0	0	1	5601	523	19	1		1	FAM5C	1	190068174	Silent	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	31677757	190068174	59182447	8	31256											
IARS2	55699	broad.mit.edu	37	1	220318982	220318982	+	Silent	SNP	C	T	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	220318982	T	T	220318982	2	4	538	1	0	0	0	0	0	0	0	1	7481	813	29	2		2	IARS2	1	220318982	Silent	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	30250808	220318982	28931639	9	31257											
PRSS38	339501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	228004909	228004909	+	Splice_Site	SNP	G	G	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	228004909	G	T	228004909	5	4	538	1	0	0	0	0	0	0	1	0	12637	1014	35	4	321	4	PRSS38	1	228004909	Splice_Site	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	7685927	228004909	21245712	10	31258											
LYST	1130	hgsc.bcm.edu;ucsc.edu	37	1	235950642	235950643	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	235950643	-	T	235950642	7	5	538	1	0	1	1	0	0	0	0	0	9135	797	28	0	6845	0	LYST	1	235950642	Frame_Shift_Ins	INS	-	TCGA-CJ-6028-01A-11D-1669-08	7945733	235950642	13299979	11	31259											
CTNNA2	1496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	80782891	80782891	+	Silent	SNP	G	G	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	80782891	G	T	80782891	2	4	538	1	0	0	0	0	0	0	0	1	4015	1161	41	4		4	CTNNA2	2	80782891	Silent	SNP	G	TCGA-CJ-6028-01A-11D-1669-08		80782891	162416482	12	31260											
DNAH6	1768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	84780110	84780110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	C	84780110	G	C	84780110	3	2	538	1	0	0	0	0	1	0	0	0	4607	1377	48	4	1588	4	DNAH6	2	84780110	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	3997219	84780110	158419263	13	31261											
PROC	5624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128185973	128185973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	128185973	C	A	128185973	3	1	538	1	0	0	0	0	1	0	0	0	12555	506	18	4	867	4	PROC	2	128185973	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	43405863	128185973	115013400	14	31262											
SPEG	10290	broad.mit.edu	37	2	220338227	220338227	+	Silent	SNP	C	A	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	220338227	A	A	220338227	2	1	538	1	0	0	0	0	0	0	0	1	15048	753	26	4		4	SPEG	2	220338227	Silent	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	92152254	220338227	22861146	15	31263											
PLXNA1	5361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	126708047	126708047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	126708047	G	A	126708047	3	1	538	1	0	0	0	0	1	0	0	0	12126	1145	40	1	613	1	PLXNA1	3	126708047	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08		126708047	71314383	16	31264											
PCDH10	57575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	134071474	134071474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	134071474	G	A	134071474	3	1	538	1	0	0	0	0	1	0	0	0	11514	1000	35	2	181	2	PCDH10	4	134071474	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08		134071474	57082802	17	31265											
KIF2A	3796	broad.mit.edu	37	5	61649100	61649100	+	Splice_Site	SNP	A	G	G	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	G	61649100	G	G	61649100	5	3	538	1	0	0	0	0	0	0	1	0	8304	202	7	3	478	3	KIF2A	5	61649100	Splice_Site	SNP	A	TCGA-CJ-6028-01A-11D-1669-08		61649100	119266160	18	31266											
PCDHGC4	56098	broad.mit.edu;hgsc.bcm.edu	37	5	140865503	140865503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	140865503	G	T	140865503	3	4	538	1	0	0	0	0	1	0	0	0	11577	1087	38	4	765	4	PCDHGC4	5	140865503	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	79216403	140865503	40049757	19	31267											
HTR4	3360	hgsc.bcm.edu	37	5	147889404	147889404	+	Missense_Mutation	SNP	G	G	A	rs140360260	bycluster;byfrequency;by1000genomes	TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	147889404	G	A	147889404	3	1	538	1	0	0	0	0	1	0	0	0	7456	1144	40	1	779	1	HTR4	5	147889404	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	7023901	147889404	33025856	20	31268											
SLIT3	6586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	168093623	168093623	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	G	168093623	C	G	168093623	3	3	538	1	0	0	0	0	1	0	0	0	14754	797	28	4	167	4	SLIT3	5	168093623	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	20204219	168093623	12821637	21	31269											
GFPT2	9945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179745870	179745870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	179745870	C	T	179745870	3	4	538	1	0	0	0	0	1	0	0	0	6353	652	23	1	1207	1	GFPT2	5	179745870	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	11652247	179745870	1169390	22	31270											
PI16	221476	broad.mit.edu;ucsc.edu	37	6	36922579	36922579	+	Silent	SNP	C	T	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	36922579	T	T	36922579	2	4	538	1	0	0	0	0	0	0	0	1	11876	564	20	2		2	PI16	6	36922579	Silent	SNP	C	TCGA-CJ-6028-01A-11D-1669-08		36922579	134192488	23	31271											
SLC35A1	10559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	88218885	88218885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	C	88218885	T	C	88218885	3	2	538	1	0	0	0	0	1	0	0	0	14583	1764	61	3	904	3	SLC35A1	6	88218885	Missense_Mutation	SNP	T	TCGA-CJ-6028-01A-11D-1669-08	51296306	88218885	82896182	24	31272											
MANEA	79694	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	96053676	96053676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	G	96053676	C	G	96053676	3	3	538	1	0	0	0	0	1	0	0	0	9228	913	32	4	798	4	MANEA	6	96053676	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	7834791	96053676	75061391	25	31273											
PPIL4	85313	broad.mit.edu;hgsc.bcm.edu	37	6	149855873	149855873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	149855873	C	T	149855873	3	4	538	1	0	0	0	0	1	0	0	0	12339	826	29	2	1008	2	PPIL4	6	149855873	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	53802197	149855873	21259194	26	31274											
SOD2	6648	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160113748	160113748	+	Silent	SNP	G	G	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	160113748	G	T	160113748	2	4	538	1	0	0	0	0	0	0	0	1	14934	987	35	4		4	SOD2	6	160113748	Silent	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	10257875	160113748	11001319	27	31275											
STK31	56164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23826468	23826468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	23826468	G	A	23826468	3	1	538	1	0	0	0	0	1	0	0	0	15308	1348	47	2	2490	2	STK31	7	23826468	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08		23826468	135312195	28	31276											
ZMIZ2	83637	broad.mit.edu;hgsc.bcm.edu	37	7	44796728	44796728	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	44796728	G	A	44796728	2	1	538	1	0	0	0	0	0	0	0	1	17709	1219	43	2		2	ZMIZ2	7	44796728	Silent	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	20970260	44796728	114341935	29	31277											
MTERFD1	51001	broad.mit.edu	37	8	97258647	97258647	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	97258647	A	A	97258647	3	1	538	1	0	0	0	0	1	0	0	0	9926	1319	46	2	556	2	MTERFD1	8	97258647	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08		97258647	49105375	30	31278											
ZC3H3	23144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144550433	144550433	+	Silent	SNP	G	G	C	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	C	144550433	G	C	144550433	2	2	538	1	0	0	0	0	0	0	0	1	17581	987	35	4		4	ZC3H3	8	144550433	Silent	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	47291786	144550433	1813589	31	31279											
NRBP2	340371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144920929	144920929	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	144920929	G	A	144920929	4	1	538	1	0	0	0	0	0	1	0	0	10650	1357	47	2	778	2	NRBP2	8	144920929	Nonsense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	370496	144920929	1443093	32	31280											
IFNA16	3449	broad.mit.edu	37	9	21217253	21217253	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	C	21217253	C	C	21217253	3	2	538	1	0	0	0	0	1	0	0	0	7542	333	12	5	521	5	IFNA16	9	21217253	Missense_Mutation	SNP	A	TCGA-CJ-6028-01A-11D-1669-08		21217253	119996178	33	31281											
FRMPD1	22844	broad.mit.edu;ucsc.edu	37	9	37733482	37733482	+	Silent	SNP	A	G	G	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	G	37733482	G	G	37733482	2	3	538	1	0	0	0	0	0	0	0	1	6064	233	9	3		3	FRMPD1	9	37733482	Silent	SNP	A	TCGA-CJ-6028-01A-11D-1669-08	16516229	37733482	103479949	34	31282											
GDA	9615	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	74863196	74863196	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	G	74863196	C	G	74863196	3	3	538	1	0	0	0	0	1	0	0	0	6313	876	31	4	1357	4	GDA	9	74863196	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	37129714	74863196	66350235	35	31283											
DIP2C	22982	broad.mit.edu;hgsc.bcm.edu	37	10	332271	332271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	332271	C	T	332271	3	4	538	1	0	0	0	0	1	0	0	0	4531	652	23	1	625	1	DIP2C	10	332271	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08		332271	135202476	36	31284											
CRTAC1	55118	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99640010	99640010	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	99640010	G	A	99640010	2	1	538	1	0	0	0	0	0	0	0	1	3898	1079	38	1		1	CRTAC1	10	99640010	Silent	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	99307739	99640010	35894737	37	31285											
KIF18A	81930	hgsc.bcm.edu;ucsc.edu	37	11	28058129	28058129	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	-	28058129	T	-	28058129	7	5	538	1	0	1	0	1	0	0	0	0	8287	1606	56	0	681	0	KIF18A	11	28058129	Frame_Shift_Del	DEL	T	TCGA-CJ-6028-01A-11D-1669-08		28058129	106948387	38	31286											
QSER1	79832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32953488	32953488	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	C	32953488	G	C	32953488	3	2	538	1	0	0	0	0	1	0	0	0	12895	1310	46	4	303	4	QSER1	11	32953488	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	4895359	32953488	102053028	39	31287											
OR5L1	219437	broad.mit.edu;hgsc.bcm.edu	37	11	55579228	55579228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	55579228	G	A	55579228	3	1	538	1	0	0	0	0	1	0	0	0	11177	1000	35	2	288	2	OR5L1	11	55579228	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	22625740	55579228	79427288	40	31288											
OR5W2	390148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55681565	55681565	+	Missense_Mutation	SNP	C	C	T	rs148084259		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	55681565	C	T	55681565	3	4	538	1	0	0	0	0	1	0	0	0	11192	768	27	1	440	1	OR5W2	11	55681565	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	102337	55681565	79324951	41	31289											
OR10G7	390265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123908892	123908892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	123908892	C	T	123908892	3	4	538	1	0	0	0	0	1	0	0	0	10909	536	19	1	122	1	OR10G7	11	123908892	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	68227327	123908892	11097624	42	31290											
ADAMTS20	80070	broad.mit.edu	37	12	43822466	43822466	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	43822466	A	A	43822466	3	1	538	1	0	0	0	0	1	0	0	0	266	855	30	4	2165	4	ADAMTS20	12	43822466	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08		43822466	90029429	43	31291											
ATP11A	23250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	113485756	113485756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	113485756	G	A	113485756	3	1	538	1	0	0	0	0	1	0	0	0	1119	1319	46	2	1339	2	ATP11A	13	113485756	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08		113485756	1684122	44	31292											
MMP14	4323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23310798	23310798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	23310798	G	T	23310798	3	4	538	1	0	0	0	0	1	0	0	0	9660	933	33	4	213	4	MMP14	14	23310798	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08		23310798	84038742	45	31293											
CAPN3	825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42652148	42652148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	42652148	C	T	42652148	3	4	538	1	0	0	0	0	1	0	0	0	2630	652	23	1	199	1	CAPN3	15	42652148	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08		42652148	59879244	46	31294											
TEKT5	146279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	10788652	10788652	+	Missense_Mutation	SNP	C	C	A	rs61731533	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	10788652	C	A	10788652	3	1	538	1	0	0	0	0	1	0	0	0	15768	478	17	4	1406	4	TEKT5	16	10788652	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08		10788652	79566101	47	31295											
PDXDC1	23042	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15129348	15129348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	G	15129348	A	G	15129348	3	3	538	1	0	0	0	0	1	0	0	0	11703	130	5	3	2131	3	PDXDC1	16	15129348	Missense_Mutation	SNP	A	TCGA-CJ-6028-01A-11D-1669-08	4340696	15129348	75225405	48	31296											
ACD	65057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67692130	67692130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	67692130	G	A	67692130	3	1	538	1	0	0	0	0	1	0	0	0	135	1203	42	2	423	2	ACD	16	67692130	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08	52562782	67692130	22662623	49	31297											
NFE2L1	4779	broad.mit.edu;ucsc.edu	37	17	46128663	46128663	+	Silent	SNP	C	A	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	46128663	A	A	46128663	2	1	538	1	0	0	0	0	0	0	0	1	10374	668	24	4		4	NFE2L1	17	46128663	Silent	SNP	C	TCGA-CJ-6028-01A-11D-1669-08		46128663	35066547	50	31298											
MAP3K10	4294	broad.mit.edu	37	19	40720964	40720964	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	40720964	T	T	40720964	3	4	538	1	0	0	0	0	1	0	0	0	9251	1087	38	4	2668	4	MAP3K10	19	40720964	Missense_Mutation	SNP	G	TCGA-CJ-6028-01A-11D-1669-08		40720964	18408019	51	31299											
PLAUR	5329	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44160640	44160640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	44160640	C	T	44160640	3	4	538	1	0	0	0	0	1	0	0	0	12030	681	24	2	656	2	PLAUR	19	44160640	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	3439676	44160640	14968343	52	31300											
EPN1	29924	broad.mit.edu	37	19	56204133	56204133	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	G	56204133	G	G	56204133	3	3	538	1	0	0	0	0	1	0	0	0	5187	681	24	4	1515	4	EPN1	19	56204133	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	12043493	56204133	2924850	53	31301											
PTPRT	11122	hgsc.bcm.edu;ucsc.edu	37	20	40727124	40727137	+	Frame_Shift_Del	DEL	CCAGAAGTCTGCCA	CCAGAAGTCTGCCA	-	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	CCAGAAGTCTGCCA	CCAGAAGTCTGCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	-	40727137	CCAGAAGTCTGCCA	-	40727124	7	5	538	1	0	1	0	1	0	0	0	0	12825	856	30	0	562	0	PTPRT	20	40727124	Frame_Shift_Del	DEL	CCAGAAGTCTGCCA	TCGA-CJ-6028-01A-11D-1669-08		40727124	22298396	54	31302											
HMOX1	3162	broad.mit.edu	37	22	35785885	35785885	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	35785885	A	A	35785885	3	1	538	1	0	0	0	0	1	0	0	0	7250	507	18	4	679	4	HMOX1	22	35785885	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08		35785885	15518681	55	31303											
DCAF8L1	139425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	27997690	27997690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	T	27997690	C	T	27997690	3	4	538	1	0	0	0	0	1	0	0	0	4279	893	31	1	44	1	DCAF8L1	23	27997690	Missense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08		27997690	127272870	56	31304											
BRS3	680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135570317	135570317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6028-01A-11D-1669-08	TCGA-CJ-6028-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d165717a-cc3d-4533-8194-0029c186f1bb	ade34839-33d1-4347-ad43-a32da7584331	A	135570317	C	A	135570317	4	1	538	1	0	0	0	0	0	1	0	0	1524	838	29	4	46	4	BRS3	23	135570317	Nonsense_Mutation	SNP	C	TCGA-CJ-6028-01A-11D-1669-08	107572627	135570317	19700243	57	31305											
C1orf159	54991	broad.mit.edu	37	1	1019876	1019876	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	1019876	-	-	1019876	7	5	539	1	0	1	0	1	0	0	0	0	2010	697	25	0	152	0	C1orf159	1	1019876	Frame_Shift_Del	DEL	C	TCGA-CJ-6030-01A-11D-1669-08		1019876	248230745	1	31306											
CHD5	26038	broad.mit.edu;hgsc.bcm.edu	37	1	6212526	6212526	+	Silent	SNP	G	G	A	rs140463225	byfrequency	TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	6212526	G	A	6212526	2	1	539	1	0	0	0	0	0	0	0	1	3330	1103	39	1		1	CHD5	1	6212526	Silent	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	5192650	6212526	243038095	2	31307											
ZYG11B	79699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	53237222	53237222	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	53237222	G	C	53237222	3	2	539	1	0	0	0	0	1	0	0	0	18265	1290	45	4	737	4	ZYG11B	1	53237222	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	47024696	53237222	196013399	3	31308											
ABCA4	24	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94476403	94476403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	94476403	G	T	94476403	4	4	539	1	0	0	0	0	0	1	0	0	34	1024	36	4	1198	4	ABCA4	1	94476403	Nonsense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	41239181	94476403	154774218	4	31309											
ABCA4	24	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94564377	94564377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	94564377	G	T	94564377	3	4	539	1	0	0	0	0	1	0	0	0	34	1136	40	4	6260	4	ABCA4	1	94564377	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	87974	94564377	154686244	5	31310											
COL11A1	1301	broad.mit.edu;hgsc.bcm.edu	37	1	103405991	103405991	+	Splice_Site	SNP	C	C	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	103405991	C	A	103405991	5	1	539	1	0	0	0	0	0	0	1	0	3669	695	24	4	2244	4	COL11A1	1	103405991	Splice_Site	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	8841614	103405991	145844630	6	31311											
CD53	963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111437650	111437650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	111437650	G	C	111437650	3	2	539	1	0	0	0	0	1	0	0	0	3025	991	35	4	410	4	CD53	1	111437650	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	8031659	111437650	137812971	7	31312											
C1orf103	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	111494385	111494385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	111494385	A	G	111494385	3	3	539	1	0	0	0	0	1	0	0	0	1979	43	2	3	1200	3	C1orf103	1	111494385	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	56735	111494385	137756236	8	31313											
MAGI3	260425	hgsc.bcm.edu;ucsc.edu	37	1	114193718	114193718	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	114193718	A	-	114193718	7	5	539	1	0	1	0	1	0	0	0	0	9199	333	12	0	2384	0	MAGI3	1	114193718	Frame_Shift_Del	DEL	A	TCGA-CJ-6030-01A-11D-1669-08	2699333	114193718	135056903	9	31314											
JTB	10899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153949705	153949705	+	Silent	SNP	A	A	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	153949705	A	T	153949705	2	4	539	1	0	0	0	0	0	0	0	1	7974	175	7	5		5	JTB	1	153949705	Silent	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	39755987	153949705	95300916	10	31315											
SPTA1	6708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158582749	158582749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	158582749	T	C	158582749	3	2	539	1	0	0	0	0	1	0	0	0	15128	1609	56	3	275	3	SPTA1	1	158582749	Missense_Mutation	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	4633044	158582749	90667872	11	31316											
BRP44	0	broad.mit.edu;ucsc.edu	37	1	167893736	167893736	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	167893736	T	T	167893736	4	4	539	1	0	0	0	0	0	1	0	0	1520	608	21	2	250	2	BRP44	1	167893736	Nonsense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	9310987	167893736	81356885	12	31317											
TIPRL	261726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	168153162	168153162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	168153162	C	T	168153162	3	4	539	1	0	0	0	0	1	0	0	0	15938	739	26	2	133	2	TIPRL	1	168153162	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	259426	168153162	81097459	13	31318											
SEC16B	89866	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	177906454	177906454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	177906454	A	G	177906454	3	3	539	1	0	0	0	0	1	0	0	0	14000	304	11	3	816	3	SEC16B	1	177906454	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	9753292	177906454	71344167	14	31319											
HMCN1	83872	hgsc.bcm.edu;ucsc.edu	37	1	186023105	186023105	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	186023105	T	-	186023105	7	5	539	1	0	1	0	1	0	0	0	0	7227	1432	50	0	7023	0	HMCN1	1	186023105	Frame_Shift_Del	DEL	T	TCGA-CJ-6030-01A-11D-1669-08	8116651	186023105	63227516	15	31320											
TRAF5	7188	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	211542827	211542827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	211542827	G	A	211542827	3	1	539	1	0	0	0	0	1	0	0	0	16456	943	33	2	853	2	TRAF5	1	211542827	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	25519722	211542827	37707794	16	31321											
RAB3GAP2	25782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	220445640	220445640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	220445640	G	T	220445640	3	4	539	1	0	0	0	0	1	0	0	0	12949	1000	35	4	4281	4	RAB3GAP2	1	220445640	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	8902813	220445640	28804981	17	31322											
KIAA1383	54627	hgsc.bcm.edu;ucsc.edu	37	1	232943660	232943660	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	232943660	T	-	232943660	7	5	539	1	0	1	0	1	0	0	0	0	8235	1493	52	0	2893	0	KIAA1383	1	232943660	Frame_Shift_Del	DEL	T	TCGA-CJ-6030-01A-11D-1669-08	12498020	232943660	16306961	18	31323											
CHML	1122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	241797696	241797696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	241797696	A	T	241797696	3	4	539	1	0	0	0	0	1	0	0	0	3353	391	14	5	601	5	CHML	1	241797696	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	8854036	241797696	7452925	19	31324											
OR1C1	26188	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247921449	247921449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	247921449	G	C	247921449	3	2	539	1	0	0	0	0	1	0	0	0	10959	1029	36	4	686	4	OR1C1	1	247921449	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	6123753	247921449	1329172	20	31325											
UGGT1	56886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128867214	128867214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	128867214	G	A	128867214	3	1	539	1	0	0	0	0	1	0	0	0	16953	971	34	2	433	2	UGGT1	2	128867214	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08		128867214	114332159	21	31326	387	2									
UGGT1	56886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128867224	128867224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	128867224	C	A	128867224	3	1	539	1	0	0	0	0	1	0	0	0	16953	681	24	4	443	4	UGGT1	2	128867224	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	10	128867224	114332149	22	31327	387	2									
GALNT13	114805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	155099221	155099221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	155099221	G	T	155099221	3	4	539	1	0	0	0	0	1	0	0	0	6218	1020	36	4	503	4	GALNT13	2	155099221	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	26231997	155099221	88100152	23	31328											
COBLL1	22837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	165557144	165557144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	165557144	C	T	165557144	3	4	539	1	0	0	0	0	1	0	0	0	3656	826	29	2	2055	2	COBLL1	2	165557144	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	10457923	165557144	77642229	24	31329											
HSPD1	3329	hgsc.bcm.edu	37	2	198363397	198363397	+	Splice_Site	SNP	A	A	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	198363397	A	C	198363397	5	2	539	1	0	0	0	0	0	0	1	0	7435	405	14	5	1589	5	HSPD1	2	198363397	Splice_Site	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	32806253	198363397	44835976	25	31330											
STK11IP	114790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220465991	220465991	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	220465991	C	T	220465991	2	4	539	1	0	0	0	0	0	0	0	1	15300	738	26	2		2	STK11IP	2	220465991	Silent	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	22102594	220465991	22733382	26	31331											
TRIP12	9320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	230642131	230642131	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	230642131	G	T	230642131	4	4	539	1	0	0	0	0	0	1	0	0	16568	1294	45	4	798	4	TRIP12	2	230642131	Nonsense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	10176140	230642131	12557242	27	31332											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10188215	10188215	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	10188215	G	G	10188215	3	3	539	1	0	0	0	0	1	0	0	0	17174	180	7	3	364	3	VHL	3	10188215	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08		10188215	187834215	28	31333											
XCR1	2829	broad.mit.edu;hgsc.bcm.edu	37	3	46063001	46063001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	46063001	C	T	46063001	3	4	539	1	0	0	0	0	1	0	0	0	17437	507	18	2	566	2	XCR1	3	46063001	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	35874786	46063001	151959429	29	31334											
C3orf45	132228	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	50324295	50324295	+	Splice_Site	SNP	T	T	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	50324295	T	A	50324295	5	1	539	1	0	0	0	0	0	0	1	0	2233	1652	57	5	373	5	C3orf45	3	50324295	Splice_Site	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	4261294	50324295	147698135	30	31335											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52696252	52696253	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	52696253	-	C	52696252	7	5	539	1	0	1	1	0	0	0	0	0	11498	1435	50	0	4583	0	PBRM1	3	52696252	Frame_Shift_Ins	INS	-	TCGA-CJ-6030-01A-11D-1669-08	2371957	52696252	145326178	31	31336											
C3orf37	56941	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128998744	128998744	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	128998744	C	T	128998744	2	4	539	1	0	0	0	0	0	0	0	1	2229	564	20	2		2	C3orf37	3	128998744	Silent	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	76302492	128998744	69023686	32	31337											
COL6A6	131873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130285927	130285927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	130285927	A	G	130285927	3	3	539	1	0	0	0	0	1	0	0	0	3705	304	11	3	1678	3	COL6A6	3	130285927	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	1287183	130285927	67736503	33	31338											
DNAJC13	23317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	132193851	132193851	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	132193851	A	G	132193851	2	3	539	1	0	0	0	0	0	0	0	1	4634	98	4	3		3	DNAJC13	3	132193851	Silent	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	1907924	132193851	65828579	34	31339											
TM4SF19	116211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	196051159	196051159	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	196051159	G	A	196051159	2	1	539	1	0	0	0	0	0	0	0	1	15980	1281	45	2		2	TM4SF19	3	196051159	Silent	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	63857308	196051159	1971271	35	31340											
PDCL2	132954	broad.mit.edu;hgsc.bcm.edu	37	4	56435977	56435977	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	56435977	T	C	56435977	2	2	539	1	0	0	0	0	0	0	0	1	11634	1538	54	3		3	PDCL2	4	56435977	Silent	SNP	T	TCGA-CJ-6030-01A-11D-1669-08		56435977	134718299	36	31341											
TECRL	253017	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	65274994	65274994	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	65274994	G	C	65274994	3	2	539	1	0	0	0	0	1	0	0	0	15758	1020	36	4	1063	4	TECRL	4	65274994	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	8839017	65274994	125879282	37	31342	388	2									
TECRL	253017	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	65274995	65274995	+	Silent	SNP	T	T	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	65274995	T	A	65274995	2	1	539	1	0	0	0	0	0	0	0	1	15758	1628	57	5		5	TECRL	4	65274995	Silent	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	1	65274995	125879281	38	31343	388	2									
SULT1E1	6783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	70707775	70707775	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	70707775	T	C	70707775	2	2	539	1	0	0	0	0	0	0	0	1	15392	1490	52	3		3	SULT1E1	4	70707775	Silent	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	5432780	70707775	120446501	39	31344											
SHROOM3	57619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77661527	77661527	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	77661527	C	G	77661527	3	3	539	1	0	0	0	0	1	0	0	0	14308	913	32	4	2219	4	SHROOM3	4	77661527	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	6953752	77661527	113492749	40	31345											
C4orf37	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	98761954	98761954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	98761954	G	A	98761954	3	1	539	1	0	0	0	0	1	0	0	0	2269	1057	37	1	217	1	C4orf37	4	98761954	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	21100427	98761954	92392322	41	31346											
SKP2	6502	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	36177323	36177323	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	36177323	A	T	36177323	3	4	539	1	0	0	0	0	1	0	0	0	14375	98	4	5	1024	5	SKP2	5	36177323	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08		36177323	144737937	42	31347											
ISL1	3670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	50685530	50685530	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	50685530	C	T	50685530	4	4	539	1	0	0	0	0	0	1	0	0	7863	711	25	2	543	2	ISL1	5	50685530	Nonsense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	14508207	50685530	130229730	43	31348											
BDP1	55814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	70785431	70785431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	70785431	G	A	70785431	3	1	539	1	0	0	0	0	1	0	0	0	1395	971	34	2	1452	2	BDP1	5	70785431	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	20099901	70785431	110129829	44	31349											
POLK	51426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	74865216	74865216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	74865216	A	G	74865216	3	3	539	1	0	0	0	0	1	0	0	0	12211	217	8	3	317	3	POLK	5	74865216	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	4079785	74865216	106050044	45	31350											
GPR98	84059	hgsc.bcm.edu;ucsc.edu	37	5	89969937	89969938	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	89969938	-	T	89969937	7	5	539	1	0	1	1	0	0	0	0	0	6728	1261	44	0	5086	0	GPR98	5	89969937	Frame_Shift_Ins	INS	-	TCGA-CJ-6030-01A-11D-1669-08	15104721	89969937	90945323	46	31351											
PPIP5K2	23262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	102513641	102513641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	102513641	A	C	102513641	3	2	539	1	0	0	0	0	1	0	0	0	12343	101	4	5	2800	5	PPIP5K2	5	102513641	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	12543704	102513641	78401619	47	31352											
LMNB1	4001	broad.mit.edu;ucsc.edu	37	5	126158526	126158526	+	Silent	SNP	C	T	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	126158526	T	T	126158526	2	4	539	1	0	0	0	0	0	0	0	1	8856	813	29	2		2	LMNB1	5	126158526	Silent	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	23644885	126158526	54756734	48	31353											
NSD1	64324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176720945	176720945	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	176720945	C	T	176720945	2	4	539	1	0	0	0	0	0	0	0	1	10676	825	29	2		2	NSD1	5	176720945	Silent	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	50562419	176720945	4194315	49	31354											
RREB1	6239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7248780	7248780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	7248780	C	G	7248780	3	3	539	1	0	0	0	0	1	0	0	0	13692	507	18	4	4846	4	RREB1	6	7248780	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08		7248780	163866287	50	31355											
BTN1A1	696	hgsc.bcm.edu;ucsc.edu	37	6	26501821	26501822	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	26501822	-	T	26501821	7	5	539	1	0	1	1	0	0	0	0	0	1561	623	22	0	89	0	BTN1A1	6	26501821	Frame_Shift_Ins	INS	-	TCGA-CJ-6030-01A-11D-1669-08	19253041	26501821	144613246	51	31356											
TUBB	203068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	30688293	30688293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	30688293	A	C	30688293	3	2	539	1	0	0	0	0	1	0	0	0	16764	101	4	5	12	5	TUBB	6	30688293	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	4186472	30688293	140426774	52	31357											
C6orf47	57827	broad.mit.edu;hgsc.bcm.edu	37	6	31627604	31627604	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	31627604	T	A	31627604	3	1	539	1	0	0	0	0	1	0	0	0	2366	1609	56	5	767	5	C6orf47	6	31627604	Missense_Mutation	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	939311	31627604	139487463	53	31358											
NOTCH4	4855	hgsc.bcm.edu	37	6	32187443	32187443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	32187443	C	A	32187443	3	1	539	1	0	0	0	0	1	0	0	0	10558	710	25	4	4667	4	NOTCH4	6	32187443	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	559839	32187443	138927624	54	31359											
PSMB8	5696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	32808790	32808790	+	Silent	SNP	T	T	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	32808790	T	A	32808790	2	1	539	1	0	0	0	0	0	0	0	1	12693	1509	53	5		5	PSMB8	6	32808790	Silent	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	621347	32808790	138306277	55	31360											
RXRB	6257	broad.mit.edu;hgsc.bcm.edu	37	6	33163416	33163416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	33163416	A	G	33163416	3	3	539	1	0	0	0	0	1	0	0	0	13777	304	11	3	430	3	RXRB	6	33163416	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	354626	33163416	137951651	56	31361											
KIAA0240	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	42796273	42796273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	42796273	C	T	42796273	3	4	539	1	0	0	0	0	1	0	0	0	8171	797	28	2	216	2	KIAA0240	6	42796273	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	9632857	42796273	128318794	57	31362											
TINAG	27283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	54214608	54214608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	54214608	C	T	54214608	3	4	539	1	0	0	0	0	1	0	0	0	15933	527	19	1	1020	1	TINAG	6	54214608	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	11418335	54214608	116900459	58	31363											
EYS	346007	broad.mit.edu;hgsc.bcm.edu	37	6	66112428	66112428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	66112428	G	A	66112428	3	1	539	1	0	0	0	0	1	0	0	0	5334	1294	45	2	8417	2	EYS	6	66112428	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	11897820	66112428	105002639	59	31364											
HTR1E	3354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	87725418	87725418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	87725418	G	T	87725418	3	4	539	1	0	0	0	0	1	0	0	0	7446	1241	43	4	368	4	HTR1E	6	87725418	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	21612990	87725418	83389649	60	31365											
VGLL2	245806	hgsc.bcm.edu;ucsc.edu	37	6	117589513	117589514	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	117589514	-	G	117589513	7	5	539	1	0	1	1	0	0	0	0	0	17171	652	23	0	256	0	VGLL2	6	117589513	Frame_Shift_Ins	INS	-	TCGA-CJ-6030-01A-11D-1669-08	29864095	117589513	53525554	61	31366											
IFNGR1	3459	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	137528120	137528120	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	137528120	G	A	137528120	2	1	539	1	0	0	0	0	0	0	0	1	7556	1103	39	1		1	IFNGR1	6	137528120	Silent	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	19938607	137528120	33586947	62	31367											
HIP1	3092	broad.mit.edu;hgsc.bcm.edu	37	7	75168737	75168737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	75168737	C	A	75168737	3	1	539	1	0	0	0	0	1	0	0	0	7121	796	28	4	154	4	HIP1	7	75168737	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08		75168737	83969926	63	31368											
FZD1	8321	broad.mit.edu;hgsc.bcm.edu	37	7	90895797	90895797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	90895797	G	T	90895797	3	4	539	1	0	0	0	0	1	0	0	0	6135	1348	47	4	1604	4	FZD1	7	90895797	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	15727060	90895797	68242866	64	31369											
MNX1	3110	broad.mit.edu	37	7	156798268	156798268	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	156798268	-	-	156798268	7	5	539	1	0	1	0	1	0	0	0	0	9686	987	35	0	57	0	MNX1	7	156798268	Frame_Shift_Del	DEL	G	TCGA-CJ-6030-01A-11D-1669-08	65902471	156798268	2340395	65	31370											
PPP2R2A	5520	broad.mit.edu;ucsc.edu	37	8	26217736	26217736	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	26217736	T	T	26217736	3	4	539	1	0	0	0	0	1	0	0	0	12394	1232	43	4	457	4	PPP2R2A	8	26217736	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08		26217736	120146286	66	31371											
ELAVL2	1993	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	23705049	23705049	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	23705049	A	G	23705049	2	3	539	1	0	0	0	0	0	0	0	1	5052	40	2	3		3	ELAVL2	9	23705049	Silent	SNP	A	TCGA-CJ-6030-01A-11D-1669-08		23705049	117508382	67	31372											
ACO1	48	broad.mit.edu	37	9	32427337	32427337	+	Missense_Mutation	SNP	G	A	A	rs189305274	by1000genomes	TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	32427337	A	A	32427337	3	1	539	1	0	0	0	0	1	0	0	0	146	1145	40	1	1429	1	ACO1	9	32427337	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	8722288	32427337	108786094	68	31373											
RUSC2	9853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35547730	35547730	+	Silent	SNP	A	A	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	35547730	A	T	35547730	2	4	539	1	0	0	0	0	0	0	0	1	13764	436	16	5		5	RUSC2	9	35547730	Silent	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	3120393	35547730	105665701	69	31374											
C9orf84	158401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	114454520	114454520	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	114454520	A	T	114454520	3	4	539	1	0	0	0	0	1	0	0	0	2502	159	6	5	797	5	C9orf84	9	114454520	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	78906790	114454520	26758911	70	31375											
ASS1	445	broad.mit.edu;hgsc.bcm.edu	37	9	133333803	133333803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	133333803	G	T	133333803	3	4	539	1	0	0	0	0	1	0	0	0	1061	1377	48	4	200	4	ASS1	9	133333803	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	18879283	133333803	7879628	71	31376											
ADAMTS13	11093	hgsc.bcm.edu;ucsc.edu	37	9	136290647	136290647	+	Splice_Site	SNP	A	A	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	136290647	A	G	136290647	5	3	539	1	0	0	0	0	0	0	1	0	258	202	7	3	343	3	ADAMTS13	9	136290647	Splice_Site	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	2956844	136290647	4922784	72	31377											
DNA2	1763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70227941	70227941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	70227941	C	T	70227941	3	4	539	1	0	0	0	0	1	0	0	0	4598	739	26	2	2878	2	DNA2	10	70227941	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08		70227941	65306806	73	31378											
ENTPD1	953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	97607250	97607250	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	97607250	T	C	97607250	2	2	539	1	0	0	0	0	0	0	0	1	5140	1413	49	3		3	ENTPD1	10	97607250	Silent	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	27379309	97607250	37927497	74	31379											
TACC2	10579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	123846868	123846868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	123846868	T	C	123846868	3	2	539	1	0	0	0	0	1	0	0	0	15514	1841	64	3	4863	3	TACC2	10	123846868	Missense_Mutation	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	26239618	123846868	11687879	75	31380											
FAM196A	642938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	128974169	128974169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	128974169	G	A	128974169	3	1	539	1	0	0	0	0	1	0	0	0	5532	1087	38	1	960	1	FAM196A	10	128974169	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	5127301	128974169	6560578	76	31381											
MKI67	4288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	129913433	129913433	+	Silent	SNP	A	A	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	129913433	A	C	129913433	2	2	539	1	0	0	0	0	0	0	0	1	9605	407	15	5		5	MKI67	10	129913433	Silent	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	939264	129913433	5621314	77	31382											
JAKMIP3	282973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	133930691	133930691	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	133930691	G	C	133930691	3	2	539	1	0	0	0	0	1	0	0	0	7949	933	33	4	252	4	JAKMIP3	10	133930691	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	4017258	133930691	1604056	78	31383											
NUP160	23279	broad.mit.edu;hgsc.bcm.edu	37	11	47828687	47828687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	47828687	G	A	47828687	3	1	539	1	0	0	0	0	1	0	0	0	10764	942	33	2	2001	2	NUP160	11	47828687	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08		47828687	87177829	79	31384											
BBS1	582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66287216	66287216	+	Silent	SNP	C	C	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	66287216	C	G	66287216	2	3	539	1	0	0	0	0	0	0	0	1	1335	581	21	4		4	BBS1	11	66287216	Silent	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	18458529	66287216	68719300	80	31385											
RIMKLB	57494	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	8904578	8904578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	8904578	G	A	8904578	3	1	539	1	0	0	0	0	1	0	0	0	13379	1290	45	2	442	2	RIMKLB	12	8904578	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08		8904578	124947317	81	31386											
TSPAN11	441631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	31136075	31136075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	31136075	C	A	31136075	3	1	539	1	0	0	0	0	1	0	0	0	16647	739	26	4	714	4	TSPAN11	12	31136075	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	22231497	31136075	102715820	82	31387											
LRP1	4035	hgsc.bcm.edu;ucsc.edu	37	12	57560827	57560833	+	Frame_Shift_Del	DEL	GTGGTAA	GTGGTAA	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	GTGGTAA	GTGGTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	57560833	GTGGTAA	-	57560827	7	5	539	1	0	1	0	1	0	0	0	0	8958	1377	48	0	2982	0	LRP1	12	57560827	Frame_Shift_Del	DEL	GTGGTAA	TCGA-CJ-6030-01A-11D-1669-08	26424752	57560827	76291068	83	31388											
SRGAP1	57522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	64377845	64377845	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	64377845	A	C	64377845	3	2	539	1	0	0	0	0	1	0	0	0	15157	98	4	5	192	5	SRGAP1	12	64377845	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	6817018	64377845	69474050	84	31389											
XPOT	11260	broad.mit.edu;hgsc.bcm.edu	37	12	64828368	64828368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	64828368	G	T	64828368	3	4	539	1	0	0	0	0	1	0	0	0	17462	1377	48	4	2608	4	XPOT	12	64828368	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	450523	64828368	69023527	85	31390											
FAM123A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25743823	25743823	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	25743823	C	T	25743823	2	4	539	1	0	0	0	0	0	0	0	1	5426	581	21	2		2	FAM123A	13	25743823	Silent	SNP	C	TCGA-CJ-6030-01A-11D-1669-08		25743823	89426055	86	31391											
KLHL1	57626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	70281831	70281831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	70281831	C	T	70281831	3	4	539	1	0	0	0	0	1	0	0	0	8372	478	17	2	141	2	KLHL1	13	70281831	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	44538008	70281831	44888047	87	31392											
DIS3	22894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	73335571	73335571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	73335571	T	C	73335571	3	2	539	1	0	0	0	0	1	0	0	0	4537	1406	49	3	288	3	DIS3	13	73335571	Missense_Mutation	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	3053740	73335571	41834307	88	31393											
SLITRK6	84189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	86370298	86370298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	86370298	G	T	86370298	3	4	539	1	0	0	0	0	1	0	0	0	14760	1386	48	4	2183	4	SLITRK6	13	86370298	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	13034727	86370298	28799580	89	31394											
TUBGCP3	10426	hgsc.bcm.edu;ucsc.edu	37	13	113176789	113176789	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	113176789	A	-	113176789	7	5	539	1	0	1	0	1	0	0	0	0	16779	243	9	0	1169	0	TUBGCP3	13	113176789	Frame_Shift_Del	DEL	A	TCGA-CJ-6030-01A-11D-1669-08	26806491	113176789	1993089	90	31395											
RPGRIP1	57096	hgsc.bcm.edu;ucsc.edu	37	14	21796727	21796727	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	21796727	C	T	21796727	4	4	539	1	0	0	0	0	0	1	0	0	13562	827	29	2	3110	2	RPGRIP1	14	21796727	Nonsense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08		21796727	85552813	91	31396											
SPTBN5	51332	broad.mit.edu	37	15	42175214	42175214	+	Silent	SNP	C	T	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	42175214	T	T	42175214	2	4	539	1	0	0	0	0	0	0	0	1	15134	581	21	2		2	SPTBN5	15	42175214	Silent	SNP	C	TCGA-CJ-6030-01A-11D-1669-08		42175214	60356178	92	31397											
VPS39	23339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42480038	42480038	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	42480038	T	A	42480038	3	1	539	1	0	0	0	0	1	0	0	0	17221	1551	54	5	2348	5	VPS39	15	42480038	Missense_Mutation	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	304824	42480038	60051354	93	31398											
CAPN3	825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	42695072	42695072	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	42695072	C	T	42695072	2	4	539	1	0	0	0	0	0	0	0	1	2630	477	17	2		2	CAPN3	15	42695072	Silent	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	215034	42695072	59836320	94	31399											
SECISBP2L	9728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49301485	49301485	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	49301485	G	C	49301485	3	2	539	1	0	0	0	0	1	0	0	0	14020	1000	35	4	1370	4	SECISBP2L	15	49301485	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	6606413	49301485	53229907	95	31400											
C15orf33	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49868999	49868999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	49868999	A	T	49868999	3	4	539	1	0	0	0	0	1	0	0	0	1793	420	15	5	1081	5	C15orf33	15	49868999	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	567514	49868999	52662393	96	31401											
HEXA	3073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	72645420	72645420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	72645420	G	T	72645420	3	4	539	1	0	0	0	0	1	0	0	0	7080	991	35	4	1070	4	HEXA	15	72645420	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	22776421	72645420	29885972	97	31402											
SYNM	23336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	99672128	99672128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	99672128	T	C	99672128	3	2	539	1	0	0	0	0	1	0	0	0	15467	1435	50	3	3576	3	SYNM	15	99672128	Missense_Mutation	SNP	T	TCGA-CJ-6030-01A-11D-1669-08	27026708	99672128	2859264	98	31403											
ZNF764	92595	broad.mit.edu;ucsc.edu	37	16	30569111	30569111	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	30569111	C	C	30569111	3	2	539	1	0	0	0	0	1	0	0	0	18150	159	6	5	981	5	ZNF764	16	30569111	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08		30569111	59785642	99	31404											
SRCAP	10847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	30749422	30749422	+	Silent	SNP	A	A	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	30749422	A	T	30749422	2	4	539	1	0	0	0	0	0	0	0	1	15147	175	7	5		5	SRCAP	16	30749422	Silent	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	180311	30749422	59605331	100	31405											
IKZF3	22806	broad.mit.edu;hgsc.bcm.edu	37	17	37922736	37922736	+	Silent	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	37922736	G	T	37922736	2	4	539	1	0	0	0	0	0	0	0	1	7623	1190	42	4		4	IKZF3	17	37922736	Silent	SNP	G	TCGA-CJ-6030-01A-11D-1669-08		37922736	43272474	101	31406	389	2									
IKZF3	22806	broad.mit.edu;hgsc.bcm.edu	37	17	37922737	37922737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	37922737	C	G	37922737	3	3	539	1	0	0	0	0	1	0	0	0	7623	768	27	4	697	4	IKZF3	17	37922737	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	1	37922737	43272473	102	31407	389	2									
NFE2L1	4779	broad.mit.edu;ucsc.edu	37	17	46135813	46135813	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	46135813	G	G	46135813	3	3	539	1	0	0	0	0	1	0	0	0	10374	565	20	4	1147	4	NFE2L1	17	46135813	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	8213076	46135813	35059397	103	31408											
MED13	9969	hgsc.bcm.edu;ucsc.edu	37	17	60059957	60059957	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	60059957	T	-	60059957	7	5	539	1	0	1	0	1	0	0	0	0	9437	1725	60	0	3177	0	MED13	17	60059957	Frame_Shift_Del	DEL	T	TCGA-CJ-6030-01A-11D-1669-08	13924144	60059957	21135253	104	31409											
NPTX1	4884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78445540	78445540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	78445540	G	T	78445540	3	4	539	1	0	0	0	0	1	0	0	0	10609	1357	47	4	237	4	NPTX1	17	78445540	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	18385583	78445540	2749670	105	31410											
NARF	26502	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	80443460	80443460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	80443460	G	T	80443460	3	4	539	1	0	0	0	0	1	0	0	0	10174	933	33	4	1239	4	NARF	17	80443460	Missense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	1997920	80443460	751750	106	31411											
ABCA7	10347	broad.mit.edu	37	19	1056479	1056479	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	1056479	A	A	1056479	3	1	539	1	0	0	0	0	1	0	0	0	37	711	25	4	4693	4	ABCA7	19	1056479	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08		1056479	58072504	107	31412											
CELF5	60680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3281241	3281241	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	3281241	G	A	3281241	2	1	539	1	0	0	0	0	0	0	0	1	3221	991	35	2		2	CELF5	19	3281241	Silent	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	2224762	3281241	55847742	108	31413											
FBN3	84467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8194141	8194141	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	8194141	G	C	8194141	4	2	539	1	0	0	0	0	0	1	0	0	5711	1294	45	4	6468	4	FBN3	19	8194141	Nonsense_Mutation	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	4912900	8194141	50934842	109	31414											
DMKN	93099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36003325	36003325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	36003325	C	T	36003325	3	4	539	1	0	0	0	0	1	0	0	0	4584	681	24	2	1121	2	DMKN	19	36003325	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	27809184	36003325	23125658	110	31415											
YIF1B	90522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38798068	38798068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	38798068	C	A	38798068	3	1	539	1	0	0	0	0	1	0	0	0	17488	608	21	4	244	4	YIF1B	19	38798068	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	2794743	38798068	20330915	111	31416											
CYP2F1	1572	broad.mit.edu	37	19	41627951	41627951	+	Silent	SNP	C	T	T	rs139489388		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	41627951	T	T	41627951	2	4	539	1	0	0	0	0	0	0	0	1	4173	874	31	1		1	CYP2F1	19	41627951	Silent	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	2829883	41627951	17501032	112	31417											
LYPD3	27076	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	43967403	43967403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	43967403	C	T	43967403	3	4	539	1	0	0	0	0	1	0	0	0	9118	710	25	2	629	2	LYPD3	19	43967403	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	2339452	43967403	15161580	113	31418											
ZNF404	342908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44376785	44376785	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	44376785	T	-	44376785	7	5	539	1	0	1	0	1	0	0	0	0	17898	1490	52	0	81	0	ZNF404	19	44376785	Frame_Shift_Del	DEL	T	TCGA-CJ-6030-01A-11D-1669-08	409382	44376785	14752198	114	31419											
PANK2	80025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3897581	3897581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	3897581	A	C	3897581	3	2	539	1	0	0	0	0	1	0	0	0	11424	14	1	5	1438	5	PANK2	20	3897581	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08		3897581	59127939	115	31420											
RBM39	9584	hgsc.bcm.edu;ucsc.edu	37	20	34309720	34309720	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	-	34309720	G	-	34309720	7	5	539	1	0	1	0	1	0	0	0	0	13146	1294	45	0	861	0	RBM39	20	34309720	Frame_Shift_Del	DEL	G	TCGA-CJ-6030-01A-11D-1669-08	30412139	34309720	28715800	116	31421											
CTCFL	140690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	56090853	56090853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	56090853	C	T	56090853	3	4	539	1	0	0	0	0	1	0	0	0	4003	623	22	2	918	2	CTCFL	20	56090853	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08	21781133	56090853	6934667	117	31422											
MORC3	23515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37721695	37721695	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	37721695	T	C	37721695	2	2	539	1	0	0	0	0	0	0	0	1	9710	1509	53	3		3	MORC3	21	37721695	Silent	SNP	T	TCGA-CJ-6030-01A-11D-1669-08		37721695	10408200	118	31423											
SMARCB1	6598	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24143192	24143192	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	A	24143192	T	A	24143192	3	1	539	1	0	0	0	0	1	0	0	0	14787	1606	56	5	438	5	SMARCB1	22	24143192	Missense_Mutation	SNP	T	TCGA-CJ-6030-01A-11D-1669-08		24143192	27161374	119	31424											
SEC14L3	266629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30856107	30856107	+	Silent	SNP	G	G	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	30856107	G	T	30856107	2	4	539	1	0	0	0	0	0	0	0	1	13996	987	35	4		4	SEC14L3	22	30856107	Silent	SNP	G	TCGA-CJ-6030-01A-11D-1669-08	6712915	30856107	20448459	120	31425											
MCM5	4174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	35815920	35815920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	C	35815920	A	C	35815920	3	2	539	1	0	0	0	0	1	0	0	0	9397	247	9	5	1797	5	MCM5	22	35815920	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	4959813	35815920	15488646	121	31426											
EP300	2033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	41572994	41572994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	G	41572994	A	G	41572994	3	3	539	1	0	0	0	0	1	0	0	0	5150	72	3	3	5401	3	EP300	22	41572994	Missense_Mutation	SNP	A	TCGA-CJ-6030-01A-11D-1669-08	5757074	41572994	9731572	122	31427											
NAA10	8260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153196257	153196257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	153196257	C	T	153196257	3	4	539	1	0	0	0	0	1	0	0	0	10123	768	27	1	285	1	NAA10	23	153196257	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08		153196257	2074303	123	31428											
KDM5D	8284	broad.mit.edu;ucsc.edu	37	Y	21903350	21903350	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6030-01A-11D-1669-08	TCGA-CJ-6030-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c904299c-09a8-4a4c-9378-2fee0ac4cd33	ac520dbf-14be-4783-a879-412bed97580c	T	21903350	T	T	21903350	3	4	539	1	0	0	0	0	1	0	0	0	8143	835	29	2	4432	2	KDM5D	24	21903350	Missense_Mutation	SNP	C	TCGA-CJ-6030-01A-11D-1669-08		21903350	37470216	124	31429											
CHD5	26038	broad.mit.edu;ucsc.edu	37	1	6208965	6208965	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	6208965	T	T	6208965	3	4	540	1	0	0	0	0	1	0	0	0	3330	1252	44	4	4664	4	CHD5	1	6208965	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08		6208965	243041656	1	31430											
FBXO42	54455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16583146	16583146	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	16583146	T	G	16583146	3	3	540	1	0	0	0	0	1	0	0	0	5758	1551	54	5	1566	5	FBXO42	1	16583146	Missense_Mutation	SNP	T	TCGA-CJ-6031-01A-11D-1669-08	10374181	16583146	232667475	2	31431											
PRPF38B	55119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109238748	109238748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	109238748	G	T	109238748	3	4	540	1	0	0	0	0	1	0	0	0	12578	962	34	4	439	4	PRPF38B	1	109238748	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	92655602	109238748	140011873	3	31432	390	2									
PRPF38B	55119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109238749	109238749	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	109238749	C	T	109238749	4	4	540	1	0	0	0	0	0	1	0	0	12578	711	25	2	440	2	PRPF38B	1	109238749	Nonsense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	1	109238749	140011872	4	31433	390	2									
FAM40A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110582061	110582061	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	110582061	A	T	110582061	3	4	540	1	0	0	0	0	1	0	0	0	5567	333	12	5	523	5	FAM40A	1	110582061	Missense_Mutation	SNP	A	TCGA-CJ-6031-01A-11D-1669-08	1343312	110582061	138668560	5	31434											
CHRNB2	1141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154543879	154543879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	154543879	C	A	154543879	3	1	540	1	0	0	0	0	1	0	0	0	3393	680	24	4	598	4	CHRNB2	1	154543879	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	43961818	154543879	94706742	6	31435											
C1orf112	55732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169822055	169822055	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	169822055	G	A	169822055	4	1	540	1	0	0	0	0	0	1	0	0	1987	1357	47	2	2575	2	C1orf112	1	169822055	Nonsense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	15278176	169822055	79428566	7	31436											
NR5A2	2494	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200014591	200014591	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	200014591	C	A	200014591	2	1	540	1	0	0	0	0	0	0	0	1	10643	842	30	4		4	NR5A2	1	200014591	Silent	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	30192536	200014591	49236030	8	31437											
TLK1	9874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	171902831	171902831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	171902831	C	T	171902831	3	4	540	1	0	0	0	0	1	0	0	0	15955	681	24	2	1322	2	TLK1	2	171902831	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08		171902831	71296542	9	31438											
NRP2	8828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	206640998	206640998	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	206640998	C	T	206640998	2	4	540	1	0	0	0	0	0	0	0	1	10668	581	21	2		2	NRP2	2	206640998	Silent	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	34738167	206640998	36558375	10	31439											
INPP5D	3635	broad.mit.edu	37	2	234113207	234113207	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	-	234113207	-	-	234113207	7	5	540	1	0	1	0	1	0	0	0	0	7763	1045	37	0	3021	0	INPP5D	2	234113207	Frame_Shift_Del	DEL	G	TCGA-CJ-6031-01A-11D-1669-08	27472209	234113207	9086166	11	31440											
HDAC4	9759	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	240111615	240111615	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	C	240111615	G	C	240111615	3	2	540	1	0	0	0	0	1	0	0	0	7016	1357	47	4	3097	4	HDAC4	2	240111615	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	5998408	240111615	3087758	12	31441											
VHL	7428	hgsc.bcm.edu	37	3	10183859	10183859	+	Missense_Mutation	SNP	C	C	T	rs17855706		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	10183859	C	T	10183859	3	4	540	1	0	0	0	0	1	0	0	0	17174	594	21	2	330	2	VHL	3	10183859	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08		10183859	187838571	13	31442											
ATG7	10533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	11389435	11389435	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	11389435	G	T	11389435	4	4	540	1	0	0	0	0	0	1	0	0	1101	1291	45	4	1252	4	ATG7	3	11389435	Nonsense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	1205576	11389435	186632995	14	31443											
KCNH8	131096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	19436689	19436689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	19436689	G	A	19436689	3	1	540	1	0	0	0	0	1	0	0	0	8045	1145	40	1	1089	1	KCNH8	3	19436689	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	8047254	19436689	178585741	15	31444											
POLQ	10721	broad.mit.edu;ucsc.edu	37	3	121208173	121208173	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	121208173	G	G	121208173	3	3	540	1	0	0	0	0	1	0	0	0	12215	1783	62	5	4227	5	POLQ	3	121208173	Missense_Mutation	SNP	T	TCGA-CJ-6031-01A-11D-1669-08	101771484	121208173	76814257	16	31445											
RASA2	5922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	141278763	141278763	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	141278763	A	G	141278763	2	3	540	1	0	0	0	0	0	0	0	1	13074	407	15	3		3	RASA2	3	141278763	Silent	SNP	A	TCGA-CJ-6031-01A-11D-1669-08	20070590	141278763	56743667	17	31446											
CRYGS	1427	broad.mit.edu;ucsc.edu	37	3	186262113	186262113	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	186262113	T	T	186262113	3	4	540	1	0	0	0	0	1	0	0	0	3921	478	17	2	545	2	CRYGS	3	186262113	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	44983350	186262113	11760317	18	31447											
TACC3	10460	hgsc.bcm.edu	37	4	1729795	1729795	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	1729795	A	G	1729795	2	3	540	1	0	0	0	0	0	0	0	1	15515	69	3	3		3	TACC3	4	1729795	Silent	SNP	A	TCGA-CJ-6031-01A-11D-1669-08		1729795	189424481	19	31448											
AGXT2L1	64850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	109667938	109667938	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	C	109667938	T	C	109667938	2	2	540	1	0	0	0	0	0	0	0	1	406	1606	56	3		3	AGXT2L1	4	109667938	Silent	SNP	T	TCGA-CJ-6031-01A-11D-1669-08	107938143	109667938	81486338	20	31449											
PCDH18	54510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	138450943	138450943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	138450943	C	T	138450943	3	4	540	1	0	0	0	0	1	0	0	0	11520	739	26	2	1123	2	PCDH18	4	138450943	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	28783005	138450943	52703333	21	31450											
RXFP1	59350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	159549854	159549854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	159549854	G	A	159549854	3	1	540	1	0	0	0	0	1	0	0	0	13772	1174	41	2	934	2	RXFP1	4	159549854	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	21098911	159549854	31604422	22	31451											
PCDHB13	56123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140594887	140594887	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	140594887	G	T	140594887	4	4	540	1	0	0	0	0	0	1	0	0	11545	1175	41	4	1194	4	PCDHB13	5	140594887	Nonsense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08		140594887	40320373	23	31452											
NSD1	64324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176631295	176631295	+	Splice_Site	SNP	T	T	C	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	C	176631295	T	C	176631295	5	2	540	1	0	0	0	0	0	0	1	0	10676	1652	57	3	1248	3	NSD1	5	176631295	Splice_Site	SNP	T	TCGA-CJ-6031-01A-11D-1669-08	36036408	176631295	4283965	24	31453											
RAB24	53917	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176729440	176729440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	176729440	G	A	176729440	3	1	540	1	0	0	0	0	1	0	0	0	12924	1087	38	1	236	1	RAB24	5	176729440	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	98145	176729440	4185820	25	31454											
IBTK	25998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	82950105	82950105	+	Silent	SNP	A	A	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	82950105	A	T	82950105	2	4	540	1	0	0	0	0	0	0	0	1	7483	358	13	5		5	IBTK	6	82950105	Silent	SNP	A	TCGA-CJ-6031-01A-11D-1669-08		82950105	88164962	26	31455	391	2									
IBTK	25998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	82950107	82950107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	C	82950107	T	C	82950107	3	2	540	1	0	0	0	0	1	0	0	0	7483	1435	50	3	4076	3	IBTK	6	82950107	Missense_Mutation	SNP	T	TCGA-CJ-6031-01A-11D-1669-08	2	82950107	88164960	27	31456	391	2									
NOX3	50508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	155743887	155743887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	155743887	G	A	155743887	3	1	540	1	0	0	0	0	1	0	0	0	10564	942	33	2	473	2	NOX3	6	155743887	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	72793780	155743887	15371180	28	31457											
MCM7	4176	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99693535	99693535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	99693535	G	T	99693535	3	4	540	1	0	0	0	0	1	0	0	0	9399	971	34	4	722	4	MCM7	7	99693535	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08		99693535	59445128	29	31458											
HYAL4	23553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	123517205	123517205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	C	123517205	T	C	123517205	3	2	540	1	0	0	0	0	1	0	0	0	7473	1821	63	3	1452	3	HYAL4	7	123517205	Missense_Mutation	SNP	T	TCGA-CJ-6031-01A-11D-1669-08	23823670	123517205	35621458	30	31459	392	2									
HYAL4	23553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	123517206	123517206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	123517206	G	T	123517206	3	4	540	1	0	0	0	0	1	0	0	0	7473	1368	48	4	1453	4	HYAL4	7	123517206	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	1	123517206	35621457	31	31460	392	2									
FZD3	7976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	28385020	28385020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	C	28385020	T	C	28385020	3	2	540	1	0	0	0	0	1	0	0	0	6138	1638	57	3	753	3	FZD3	8	28385020	Missense_Mutation	SNP	T	TCGA-CJ-6031-01A-11D-1669-08		28385020	117979002	32	31461											
FGFR1	2260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38282176	38282176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	38282176	C	A	38282176	3	1	540	1	0	0	0	0	1	0	0	0	5870	768	27	4	1969	4	FGFR1	8	38282176	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	9897156	38282176	108081846	33	31462											
FER1L6	654463	broad.mit.edu;hgsc.bcm.edu	37	8	125035809	125035809	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	125035809	C	T	125035809	2	4	540	1	0	0	0	0	0	0	0	1	5822	776	27	1		1	FER1L6	8	125035809	Silent	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	86753633	125035809	21328213	34	31463											
PPP1R16A	84988	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	145724303	145724303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	145724303	G	A	145724303	3	1	540	1	0	0	0	0	1	0	0	0	12375	1319	46	2	345	2	PPP1R16A	8	145724303	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	20688494	145724303	639719	35	31464											
MLANA	2315	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	5897599	5897599	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	5897599	A	G	5897599	2	3	540	1	0	0	0	0	0	0	0	1	9618	388	14	3		3	MLANA	9	5897599	Silent	SNP	A	TCGA-CJ-6031-01A-11D-1669-08		5897599	135315832	36	31465	393	2									
MLANA	2315	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	5897600	5897600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	5897600	C	A	5897600	3	1	540	1	0	0	0	0	1	0	0	0	9618	564	20	4	127	4	MLANA	9	5897600	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	1	5897600	135315831	37	31466	393	2									
KIAA1797	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	20874780	20874780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	20874780	C	T	20874780	3	4	540	1	0	0	0	0	1	0	0	0	8265	838	29	2	2361	2	KIAA1797	9	20874780	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	14977180	20874780	120338651	38	31467											
ANUBL1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	46121526	46121526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	46121526	A	G	46121526	3	3	540	1	0	0	0	0	1	0	0	0	713	372	13	3	454	3	ANUBL1	10	46121526	Missense_Mutation	SNP	A	TCGA-CJ-6031-01A-11D-1669-08		46121526	89413221	39	31468											
NEURL	9148	broad.mit.edu	37	10	105344764	105344764	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	105344764	A	A	105344764	3	1	540	1	0	0	0	0	1	0	0	0	10352	681	24	4	1135	4	NEURL	10	105344764	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	59223238	105344764	30189983	40	31469											
C10orf79	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	105953637	105953637	+	Missense_Mutation	SNP	C	C	T	rs145913363	by1000genomes	TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	105953637	C	T	105953637	3	4	540	1	0	0	0	0	1	0	0	0	1620	536	19	1	3680	1	C10orf79	10	105953637	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	608873	105953637	29581110	41	31470											
FGFR2	2263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	123298145	123298145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	123298145	A	G	123298145	3	3	540	1	0	0	0	0	1	0	0	0	5873	449	16	3	2064	3	FGFR2	10	123298145	Missense_Mutation	SNP	A	TCGA-CJ-6031-01A-11D-1669-08	17344508	123298145	12236602	42	31471	394	2									
FGFR2	2263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	123298147	123298147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	123298147	T	G	123298147	3	3	540	1	0	0	0	0	1	0	0	0	5873	1783	62	5	2066	5	FGFR2	10	123298147	Missense_Mutation	SNP	T	TCGA-CJ-6031-01A-11D-1669-08	2	123298147	12236600	43	31472	394	2									
RNH1	6050	broad.mit.edu	37	11	498772	498772	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	498772	A	A	498772	3	1	540	1	0	0	0	0	1	0	0	0	13517	681	24	4	629	4	RNH1	11	498772	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08		498772	134507744	44	31473											
PLCB3	5331	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64028903	64028903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	64028903	A	T	64028903	3	4	540	1	0	0	0	0	1	0	0	0	12036	304	11	5	1821	5	PLCB3	11	64028903	Missense_Mutation	SNP	A	TCGA-CJ-6031-01A-11D-1669-08	63530131	64028903	70977613	45	31474											
SIK3	23387	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	116746997	116746997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	116746997	A	G	116746997	3	3	540	1	0	0	0	0	1	0	0	0	14332	217	8	3	2962	3	SIK3	11	116746997	Missense_Mutation	SNP	A	TCGA-CJ-6031-01A-11D-1669-08	52718094	116746997	18259519	46	31475											
PZP	5858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9344841	9344841	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	9344841	C	T	9344841	2	4	540	1	0	0	0	0	0	0	0	1	12882	680	24	2		2	PZP	12	9344841	Silent	SNP	C	TCGA-CJ-6031-01A-11D-1669-08		9344841	124507054	47	31476											
PIK3C2G	5288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	18435099	18435099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	18435099	T	G	18435099	3	3	540	1	0	0	0	0	1	0	0	0	11918	1432	50	5	86	5	PIK3C2G	12	18435099	Missense_Mutation	SNP	T	TCGA-CJ-6031-01A-11D-1669-08	9090258	18435099	115416796	48	31477											
FAM179B	23116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	45432114	45432114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	45432114	C	T	45432114	3	4	540	1	0	0	0	0	1	0	0	0	5510	643	23	1	492	1	FAM179B	14	45432114	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08		45432114	61917426	49	31478											
LTBP2	4053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74967715	74967715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	74967715	C	T	74967715	3	4	540	1	0	0	0	0	1	0	0	0	9081	826	29	2	131	2	LTBP2	14	74967715	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	29535601	74967715	32381825	50	31479											
MLH3	27030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75513898	75513898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	75513898	C	A	75513898	3	1	540	1	0	0	0	0	1	0	0	0	9625	797	28	4	1948	4	MLH3	14	75513898	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	546183	75513898	31835642	51	31480											
LCMT2	9836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43621613	43621613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	43621613	C	A	43621613	3	1	540	1	0	0	0	0	1	0	0	0	8686	594	21	4	989	4	LCMT2	15	43621613	Missense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08		43621613	58909779	52	31481											
ZNF710	374655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90616473	90616473	+	Silent	SNP	C	C	G	rs146964408	byfrequency;alternate_allele	TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	G	90616473	C	G	90616473	2	3	540	1	0	0	0	0	0	0	0	1	18127	639	23	4		4	ZNF710	15	90616473	Silent	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	46994860	90616473	11914919	53	31482											
MAPK3	5595	broad.mit.edu;ucsc.edu	37	16	30133218	30133218	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	30133218	A	A	30133218	3	1	540	1	0	0	0	0	1	0	0	0	9286	1087	38	1	944	1	MAPK3	16	30133218	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08		30133218	60221535	54	31483											
CA7	766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	66887326	66887326	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	66887326	G	A	66887326	2	1	540	1	0	0	0	0	0	0	0	1	2524	1165	41	2		2	CA7	16	66887326	Silent	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	36754108	66887326	23467427	55	31484											
KIAA0182	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	85701801	85701801	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	T	85701801	C	T	85701801	2	4	540	1	0	0	0	0	0	0	0	1	8166	564	20	2		2	KIAA0182	16	85701801	Silent	SNP	C	TCGA-CJ-6031-01A-11D-1669-08	18814475	85701801	4652952	56	31485											
SUPT5H	6829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39955501	39955501	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	39955501	T	A	39955501	3	1	540	1	0	0	0	0	1	0	0	0	15411	1522	53	5	726	5	SUPT5H	19	39955501	Missense_Mutation	SNP	T	TCGA-CJ-6031-01A-11D-1669-08		39955501	19173482	57	31486											
KIF3B	9371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30897808	30897808	+	Silent	SNP	G	G	C	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	C	30897808	G	C	30897808	2	2	540	1	0	0	0	0	0	0	0	1	8308	1132	40	4		4	KIF3B	20	30897808	Silent	SNP	G	TCGA-CJ-6031-01A-11D-1669-08		30897808	32127712	58	31487											
TMPRSS3	64699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	43803192	43803192	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	43803192	G	A	43803192	2	1	540	1	0	0	0	0	0	0	0	1	16260	958	34	2		2	TMPRSS3	21	43803192	Silent	SNP	G	TCGA-CJ-6031-01A-11D-1669-08		43803192	4326703	59	31488											
ELFN2	114794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	37769171	37769171	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	37769171	C	A	37769171	4	1	540	1	0	0	0	0	0	1	0	0	5060	893	31	4	62	4	ELFN2	22	37769171	Nonsense_Mutation	SNP	C	TCGA-CJ-6031-01A-11D-1669-08		37769171	13535395	60	31489											
FRMPD4	9758	hgsc.bcm.edu;ucsc.edu	37	X	12736252	12736253	+	Frame_Shift_Ins	INS	-	-	A	rs35659462		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	A	12736253	-	A	12736252	7	5	540	1	0	1	1	0	0	0	0	0	6066	1291	45	0	3369	0	FRMPD4	23	12736252	Frame_Shift_Ins	INS	-	TCGA-CJ-6031-01A-11D-1669-08		12736252	142534308	61	31490											
MAGEB3	4114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	30254882	30254882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6031-01A-11D-1669-08	TCGA-CJ-6031-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a47debc7-700e-4c64-a9b3-1113609a1ddf	7ab7544e-efbe-4520-a5ad-1bb251253877	C	30254882	G	C	30254882	3	2	540	1	0	0	0	0	1	0	0	0	9184	1319	46	4	843	4	MAGEB3	23	30254882	Missense_Mutation	SNP	G	TCGA-CJ-6031-01A-11D-1669-08	17518630	30254882	125015678	62	31491											
CPSF3L	54973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	1250912	1250912	+	Silent	SNP	A	A	C	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	C	1250912	A	C	1250912	2	2	541	1	0	0	0	0	0	0	0	1	3829	175	7	5		5	CPSF3L	1	1250912	Silent	SNP	A	TCGA-CJ-6032-01A-11D-1669-08		1250912	247999709	1	31492											
HMGN2	3151	hgsc.bcm.edu;ucsc.edu	37	1	26799998	26799998	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	-	26799998	A	-	26799998	7	5	541	1	0	1	0	1	0	0	0	0	7242	363	13	0	46	0	HMGN2	1	26799998	Frame_Shift_Del	DEL	A	TCGA-CJ-6032-01A-11D-1669-08	25549086	26799998	222450623	2	31493											
ARID1A	8289	broad.mit.edu;hgsc.bcm.edu	37	1	27094308	27094308	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	27094308	G	T	27094308	4	4	541	1	0	0	0	0	0	1	0	0	913	1291	45	4	3058	4	ARID1A	1	27094308	Nonsense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	294310	27094308	222156313	3	31494											
MATN1	4146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	31188992	31188992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	31188992	C	T	31188992	3	4	541	1	0	0	0	0	1	0	0	0	9340	768	27	1	535	1	MATN1	1	31188992	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08	4094684	31188992	218061629	4	31495											
PHC2	1912	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33820614	33820614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	33820614	G	T	33820614	3	4	541	1	0	0	0	0	1	0	0	0	11824	1348	47	4	1391	4	PHC2	1	33820614	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	2631622	33820614	215430007	5	31496											
KIAA0319L	79932	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35909816	35909816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	35909816	G	A	35909816	3	1	541	1	0	0	0	0	1	0	0	0	8176	1086	38	1	567	1	KIAA0319L	1	35909816	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	2089202	35909816	213340805	6	31497											
SMAP2	64744	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40872508	40872508	+	Silent	SNP	T	T	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	40872508	T	A	40872508	2	1	541	1	0	0	0	0	0	0	0	1	14780	1741	61	5		5	SMAP2	1	40872508	Silent	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	4962692	40872508	208378113	7	31498											
IGSF3	3321	broad.mit.edu;hgsc.bcm.edu	37	1	117156509	117156509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	C	117156509	T	C	117156509	3	2	541	1	0	0	0	0	1	0	0	0	7608	1580	55	3	2970	3	IGSF3	1	117156509	Missense_Mutation	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	76284001	117156509	132094112	8	31499											
ITGA10	8515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	145530386	145530386	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	145530386	C	T	145530386	4	4	541	1	0	0	0	0	0	1	0	0	7880	479	17	2	623	2	ITGA10	1	145530386	Nonsense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08	28373877	145530386	103720235	9	31500											
APOB	338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	21229236	21229236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	21229236	C	A	21229236	3	1	541	1	0	0	0	0	1	0	0	0	785	623	22	4	3203	4	APOB	2	21229236	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		21229236	221970137	10	31501											
SLC4A1AP	22950	broad.mit.edu;hgsc.bcm.edu	37	2	27908052	27908052	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	-	27908052	G	-	27908052	7	5	541	1	0	1	0	1	0	0	0	0	14666	1029	36	0	2062	0	SLC4A1AP	2	27908052	Frame_Shift_Del	DEL	G	TCGA-CJ-6032-01A-11D-1669-08	6678816	27908052	215291321	11	31502	395	2									
SLC4A1AP	22950	hgsc.bcm.edu	37	2	27908054	27908054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	27908054	A	T	27908054	3	4	541	1	0	0	0	0	1	0	0	0	14666	411	15	5	2064	5	SLC4A1AP	2	27908054	Missense_Mutation	SNP	A	TCGA-CJ-6032-01A-11D-1669-08	2	27908054	215291319	12	31503	395	2									
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188308	10188308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	10188308	A	T	10188308	3	4	541	1	0	0	0	0	1	0	0	0	17174	449	16	5	457	5	VHL	3	10188308	Missense_Mutation	SNP	A	TCGA-CJ-6032-01A-11D-1669-08		10188308	187834122	13	31504	396	2									
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10188309	10188309	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	10188309	A	A	10188309	3	1	541	1	0	0	0	0	1	0	0	0	17174	1435	50	5	458	5	VHL	3	10188309	Missense_Mutation	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	1	10188309	187834121	14	31505	396	2									
ECE2	9718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184001749	184001749	+	Silent	SNP	T	T	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	184001749	T	A	184001749	2	1	541	1	0	0	0	0	0	0	0	1	4892	1829	64	5		5	ECE2	3	184001749	Silent	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	173813440	184001749	14020681	15	31506											
TBCCD1	55171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186276258	186276258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	186276258	C	A	186276258	3	1	541	1	0	0	0	0	1	0	0	0	15644	913	32	4	1253	4	TBCCD1	3	186276258	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08	2274509	186276258	11746172	16	31507											
FAM13A	10144	hgsc.bcm.edu	37	4	89772247	89772248	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	89772248	-	T	89772247	7	5	541	1	0	1	1	0	0	0	0	0	5456	1086	38	0	2245	0	FAM13A	4	89772247	Frame_Shift_Ins	INS	-	TCGA-CJ-6032-01A-11D-1669-08		89772247	101382029	17	31508											
MTTP	4547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	100515934	100515934	+	Missense_Mutation	SNP	T	T	C	rs146513720		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	C	100515934	T	C	100515934	3	2	541	1	0	0	0	0	1	0	0	0	9971	1464	51	3	829	3	MTTP	4	100515934	Missense_Mutation	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	10743687	100515934	90638342	18	31509											
HTR1A	3350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	63256620	63256620	+	Missense_Mutation	SNP	G	G	T	rs140681943	alternate_allele	TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	63256620	G	T	63256620	3	4	541	1	0	0	0	0	1	0	0	0	7443	1078	38	4	344	4	HTR1A	5	63256620	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08		63256620	117658640	19	31510											
ODZ2	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	167645829	167645829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	167645829	A	T	167645829	3	4	541	1	0	0	0	0	1	0	0	0	10842	217	8	5	4996	5	ODZ2	5	167645829	Missense_Mutation	SNP	A	TCGA-CJ-6032-01A-11D-1669-08	104389209	167645829	13269431	20	31511											
LTA	4049	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	31541279	31541279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	G	31541279	C	G	31541279	3	3	541	1	0	0	0	0	1	0	0	0	9075	623	22	4	437	4	LTA	6	31541279	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		31541279	139573788	21	31512											
RXRB	6257	broad.mit.edu;hgsc.bcm.edu	37	6	33163381	33163381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	33163381	C	T	33163381	3	4	541	1	0	0	0	0	1	0	0	0	13777	797	28	2	395	2	RXRB	6	33163381	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08	1622102	33163381	137951686	22	31513											
KCNK17	89822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	39267378	39267378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	39267378	G	A	39267378	3	1	541	1	0	0	0	0	1	0	0	0	8071	1174	41	2	178	2	KCNK17	6	39267378	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	6103997	39267378	131847689	23	31514											
CUL9	23113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43173114	43173114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	43173114	G	A	43173114	3	1	541	1	0	0	0	0	1	0	0	0	4063	1348	47	2	4836	2	CUL9	6	43173114	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	3905736	43173114	127941953	24	31515											
MLLT4	4301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	168344080	168344080	+	Splice_Site	SNP	A	A	G	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	G	168344080	A	G	168344080	5	3	541	1	0	0	0	0	0	0	1	0	9636	434	15	3	3237	3	MLLT4	6	168344080	Splice_Site	SNP	A	TCGA-CJ-6032-01A-11D-1669-08	125170966	168344080	2770987	25	31516											
MAGI2	9863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	77885771	77885771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	77885771	C	A	77885771	3	1	541	1	0	0	0	0	1	0	0	0	9198	709	25	4	2883	4	MAGI2	7	77885771	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		77885771	81252892	26	31517											
EPPK1	83481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144943012	144943012	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	144943012	C	T	144943012	4	4	541	1	0	0	0	0	0	1	0	0	5192	624	22	2	2856	2	EPPK1	8	144943012	Nonsense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		144943012	1421010	27	31518											
NDUFB6	4712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32571039	32571039	+	Silent	SNP	T	T	C	rs146518353	by1000genomes	TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	C	32571039	T	C	32571039	2	2	541	1	0	0	0	0	0	0	0	1	10292	1393	49	3		3	NDUFB6	9	32571039	Silent	SNP	T	TCGA-CJ-6032-01A-11D-1669-08		32571039	108642392	28	31519											
OR1L1	26737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125424692	125424692	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	C	125424692	G	C	125424692	3	2	541	1	0	0	0	0	1	0	0	0	10970	1174	41	4	700	4	OR1L1	9	125424692	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	92853653	125424692	15788739	29	31520											
QSER1	79832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32953804	32953804	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	32953804	C	T	32953804	2	4	541	1	0	0	0	0	0	0	0	1	12895	564	20	2		2	QSER1	11	32953804	Silent	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		32953804	102052712	30	31521											
MS4A6A	64231	broad.mit.edu;hgsc.bcm.edu	37	11	59949129	59949129	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	C	59949129	T	C	59949129	2	2	541	1	0	0	0	0	0	0	0	1	9871	1567	55	3		3	MS4A6A	11	59949129	Silent	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	26995325	59949129	75057387	31	31522											
TYR	7299	hgsc.bcm.edu;ucsc.edu	37	11	89017963	89017964	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	G	89017964	-	G	89017963	7	5	541	1	0	1	1	0	0	0	0	0	16825	63	3	0	1221	0	TYR	11	89017963	Frame_Shift_Ins	INS	-	TCGA-CJ-6032-01A-11D-1669-08	29068834	89017963	45988553	32	31523											
PVRL1	5818	broad.mit.edu	37	11	119510667	119510667	+	Silent	SNP	G	T	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	119510667	T	T	119510667	2	4	541	1	0	0	0	0	0	0	0	1	12852	1103	39	4		4	PVRL1	11	119510667	Silent	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	30492704	119510667	15495849	33	31524											
ABCC9	10060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21991035	21991035	+	Silent	SNP	T	T	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	21991035	T	A	21991035	2	1	541	1	0	0	0	0	0	0	0	1	59	1654	58	5		5	ABCC9	12	21991035	Silent	SNP	T	TCGA-CJ-6032-01A-11D-1669-08		21991035	111860860	34	31525											
FGD4	121512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32786521	32786521	+	Silent	SNP	T	T	G	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	G	32786521	T	G	32786521	2	3	541	1	0	0	0	0	0	0	0	1	5842	1799	63	5		5	FGD4	12	32786521	Silent	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	10795486	32786521	101065374	35	31526											
C12orf40	283461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	40041619	40041619	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	40041619	T	A	40041619	3	1	541	1	0	0	0	0	1	0	0	0	1688	1464	51	5	432	5	C12orf40	12	40041619	Missense_Mutation	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	7255098	40041619	93810276	36	31527											
CNTN1	1272	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	41422971	41422971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	41422971	G	A	41422971	3	1	541	1	0	0	0	0	1	0	0	0	3642	1087	38	1	3016	1	CNTN1	12	41422971	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	1381352	41422971	92428924	37	31528											
TRPC4	7223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	38357212	38357212	+	Missense_Mutation	SNP	C	C	T	rs140628205		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	38357212	C	T	38357212	3	4	541	1	0	0	0	0	1	0	0	0	16592	893	31	1	2729	1	TRPC4	13	38357212	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		38357212	76812666	38	31529											
AKAP6	9472	broad.mit.edu	37	14	33243070	33243070	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	33243070	T	T	33243070	3	4	541	1	0	0	0	0	1	0	0	0	455	536	19	1	3601	1	AKAP6	14	33243070	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		33243070	74106470	39	31530											
PSMA6	5687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	35761756	35761756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	C	35761756	T	C	35761756	3	2	541	1	0	0	0	0	1	0	0	0	12681	1638	57	3	76	3	PSMA6	14	35761756	Missense_Mutation	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	2518686	35761756	71587784	40	31531											
FAM96A	84191	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	64380992	64380992	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	A	64380992	C	A	64380992	2	1	541	1	0	0	0	0	0	0	0	1	5661	581	21	4		4	FAM96A	15	64380992	Silent	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		64380992	38150400	41	31532											
ABHD2	11057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89731484	89731484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	G	89731484	C	G	89731484	3	3	541	1	0	0	0	0	1	0	0	0	82	738	26	4	898	4	ABHD2	15	89731484	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08	25350492	89731484	12799908	42	31533											
CACNA1H	8912	broad.mit.edu;hgsc.bcm.edu	37	16	1260841	1260841	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	1260841	A	T	1260841	3	4	541	1	0	0	0	0	1	0	0	0	2547	246	9	5	4171	5	CACNA1H	16	1260841	Missense_Mutation	SNP	A	TCGA-CJ-6032-01A-11D-1669-08		1260841	89093912	43	31534											
TUSC5	286753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1198811	1198811	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	1198811	C	T	1198811	2	4	541	1	0	0	0	0	0	0	0	1	16791	535	19	1		1	TUSC5	17	1198811	Silent	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		1198811	79996399	44	31535											
ALKBH5	54890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18111566	18111566	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	18111566	C	T	18111566	2	4	541	1	0	0	0	0	0	0	0	1	530	506	18	2		2	ALKBH5	17	18111566	Silent	SNP	C	TCGA-CJ-6032-01A-11D-1669-08	16912755	18111566	63083644	45	31536											
POLDIP2	26073	hgsc.bcm.edu	37	17	26684392	26684392	+	Missense_Mutation	SNP	T	T	C	rs55887815		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	C	26684392	T	C	26684392	3	2	541	1	0	0	0	0	1	0	0	0	12201	1609	56	3	1067	3	POLDIP2	17	26684392	Missense_Mutation	SNP	T	TCGA-CJ-6032-01A-11D-1669-08	8572826	26684392	54510818	46	31537											
KRTAP1-3	81850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39191063	39191063	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	G	39191063	C	G	39191063	3	3	541	1	0	0	0	0	1	0	0	0	8510	710	25	4	496	4	KRTAP1-3	17	39191063	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08	12506671	39191063	42004147	47	31538											
LIPE	3991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42907058	42907058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	42907058	C	T	42907058	3	4	541	1	0	0	0	0	1	0	0	0	8828	855	30	2	570	2	LIPE	19	42907058	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		42907058	16221925	48	31539											
ZNF528	84436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52918551	52918551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	G	52918551	A	G	52918551	3	3	541	1	0	0	0	0	1	0	0	0	17981	246	9	3	460	3	ZNF528	19	52918551	Missense_Mutation	SNP	A	TCGA-CJ-6032-01A-11D-1669-08	10011493	52918551	6210432	49	31540											
NAPB	63908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	23377799	23377799	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	G	23377799	C	G	23377799	3	3	541	1	0	0	0	0	1	0	0	0	10169	797	28	4	727	4	NAPB	20	23377799	Missense_Mutation	SNP	C	TCGA-CJ-6032-01A-11D-1669-08		23377799	39647721	50	31541											
KLHL34	257240	broad.mit.edu;hgsc.bcm.edu	37	X	21674907	21674907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	21674907	G	T	21674907	3	4	541	1	0	0	0	0	1	0	0	0	8394	1357	47	4	938	4	KLHL34	23	21674907	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08		21674907	133595653	51	31542											
CYSLTR1	10800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	77528390	77528390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	T	77528390	G	T	77528390	3	4	541	1	0	0	0	0	1	0	0	0	4203	1319	46	4	163	4	CYSLTR1	23	77528390	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	55853483	77528390	77742170	52	31543											
TKTL1	8277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153524232	153524232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6032-01A-11D-1669-08	TCGA-CJ-6032-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c9823f0-69af-474d-adb7-5ec8ef4e5af7	d060b91c-6151-496a-bd87-d88c1fae20ea	C	153524232	G	C	153524232	3	2	541	1	0	0	0	0	1	0	0	0	15947	1000	35	4	22	4	TKTL1	23	153524232	Missense_Mutation	SNP	G	TCGA-CJ-6032-01A-11D-1669-08	75995842	153524232	1746328	53	31544											
MXRA8	54587	broad.mit.edu	37	1	1289294	1289294	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	1289294	A	A	1289294	3	1	542	1	0	0	0	0	1	0	0	0	10012	1464	51	5	99	5	MXRA8	1	1289294	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08		1289294	247961327	1	31545											
NPPB	4879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11918768	11918768	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	11918768	G	A	11918768	2	1	542	1	0	0	0	0	0	0	0	1	10599	1103	39	1		1	NPPB	1	11918768	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	10629474	11918768	237331853	2	31546											
AKR7L	246181	hgsc.bcm.edu	37	1	19597275	19597275	+	Frame_Shift_Del	DEL	C	C	-	rs140586925		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	-	19597275	C	-	19597275	7	5	542	1	0	1	0	1	0	0	0	0	477	912	32	0	650	0	AKR7L	1	19597275	Frame_Shift_Del	DEL	C	TCGA-CJ-6033-01A-11D-1669-08	7678507	19597275	229653346	3	31547											
MED18	54797	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	28661233	28661233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	28661233	C	G	28661233	3	3	542	1	0	0	0	0	1	0	0	0	9443	594	21	4	385	4	MED18	1	28661233	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	9063958	28661233	220589388	4	31548											
YTHDF2	51441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	29069170	29069170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	29069170	G	A	29069170	3	1	542	1	0	0	0	0	1	0	0	0	17511	1290	45	2	402	2	YTHDF2	1	29069170	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	407937	29069170	220181451	5	31549											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39715714	39715714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	39715714	A	G	39715714	3	3	542	1	0	0	0	0	1	0	0	0	9151	246	9	3	321	3	MACF1	1	39715714	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	10646544	39715714	209534907	6	31550											
MSH4	4438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	76269428	76269428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	76269428	G	T	76269428	3	4	542	1	0	0	0	0	1	0	0	0	9879	1174	41	4	263	4	MSH4	1	76269428	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	36553714	76269428	172981193	7	31551											
COL24A1	255631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	86289366	86289366	+	Splice_Site	SNP	A	A	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	86289366	A	G	86289366	5	3	542	1	0	0	0	0	0	0	1	0	3685	405	14	3	1475	3	COL24A1	1	86289366	Splice_Site	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	10019938	86289366	162961255	8	31552											
ACP6	51205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	147124277	147124277	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	147124277	A	G	147124277	2	3	542	1	0	0	0	0	0	0	0	1	165	69	3	3		3	ACP6	1	147124277	Silent	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	60834911	147124277	102126344	9	31553											
CENPF	1063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	214818566	214818566	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	214818566	A	T	214818566	3	4	542	1	0	0	0	0	1	0	0	0	3233	362	13	5	5699	5	CENPF	1	214818566	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	67694289	214818566	34432055	10	31554											
AGT	183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	230839961	230839961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	230839961	T	C	230839961	3	2	542	1	0	0	0	0	1	0	0	0	399	1493	52	3	218	3	AGT	1	230839961	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	16021395	230839961	18410660	11	31555											
STRN	6801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	37088370	37088370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	37088370	C	T	37088370	3	4	542	1	0	0	0	0	1	0	0	0	15341	797	28	2	792	2	STRN	2	37088370	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08		37088370	206111003	12	31556											
GALNT13	114805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	155295210	155295210	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	155295210	G	C	155295210	3	2	542	1	0	0	0	0	1	0	0	0	6218	1174	41	4	1540	4	GALNT13	2	155295210	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	118206840	155295210	87904163	13	31557											
XIRP2	129446	hgsc.bcm.edu;ucsc.edu	37	2	168101553	168101553	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	168101553	G	C	168101553	3	2	542	1	0	0	0	0	1	0	0	0	17442	991	35	4	3681	4	XIRP2	2	168101553	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	12806343	168101553	75097820	14	31558											
USP40	55230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234429716	234429716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	234429716	A	C	234429716	3	2	542	1	0	0	0	0	1	0	0	0	17084	101	4	5	1528	5	USP40	2	234429716	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	66328163	234429716	8769657	15	31559											
SH3BP4	23677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	235950115	235950115	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	235950115	G	A	235950115	2	1	542	1	0	0	0	0	0	0	0	1	14259	1219	43	2		2	SH3BP4	2	235950115	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	1520399	235950115	7249258	16	31560											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10188290	10188290	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	10188290	T	T	10188290	4	4	542	1	0	0	0	0	0	1	0	0	17174	479	17	2	439	2	VHL	3	10188290	Nonsense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08		10188290	187834140	17	31561											
TRANK1	9881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	36899166	36899166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	36899166	C	T	36899166	3	4	542	1	0	0	0	0	1	0	0	0	16466	623	22	2	6910	2	TRANK1	3	36899166	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	26710876	36899166	161123264	18	31562											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu	37	3	52610715	52610715	+	Splice_Site	SNP	C	C	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	52610715	C	G	52610715	5	3	542	1	0	0	0	0	0	0	1	0	11498	927	32	4	1403	4	PBRM1	3	52610715	Splice_Site	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	15711549	52610715	145411715	19	31563											
MYLK	4638	broad.mit.edu	37	3	123376191	123376191	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	123376191	A	A	123376191	3	1	542	1	0	0	0	0	1	0	0	0	10063	1406	49	5	1718	5	MYLK	3	123376191	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	70765476	123376191	74646239	20	31564											
PLXND1	23129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	129276046	129276046	+	Silent	SNP	G	G	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	129276046	G	T	129276046	2	4	542	1	0	0	0	0	0	0	0	1	12134	1161	41	4		4	PLXND1	3	129276046	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	5899855	129276046	68746384	21	31565											
PLOD2	5352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	145799589	145799589	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	145799589	A	T	145799589	3	4	542	1	0	0	0	0	1	0	0	0	12109	98	4	5	1018	5	PLOD2	3	145799589	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	16523543	145799589	52222841	22	31566											
VEPH1	79674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	157031465	157031465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	157031465	C	T	157031465	3	4	542	1	0	0	0	0	1	0	0	0	17166	623	22	2	562	2	VEPH1	3	157031465	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	11231876	157031465	40990965	23	31567											
FNDC3B	64778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	172060897	172060897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	172060897	T	G	172060897	3	3	542	1	0	0	0	0	1	0	0	0	5977	1606	56	5	2134	5	FNDC3B	3	172060897	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	15029432	172060897	25961533	24	31568											
PIK3CA	5290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	178936091	G	A	178936091	3	1	542	1	0	0	0	0	1	0	0	0	11920	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	6875194	178936091	19086339	25	31569											
GPR78	27201	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	8588871	8588871	+	Silent	SNP	G	G	A	rs148589120		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	8588871	G	A	8588871	2	1	542	1	0	0	0	0	0	0	0	1	6717	1132	40	1		1	GPR78	4	8588871	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08		8588871	182565405	26	31570											
RBM46	166863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	155719349	155719349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	155719349	A	G	155719349	3	3	542	1	0	0	0	0	1	0	0	0	13153	363	13	3	544	3	RBM46	4	155719349	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	147130478	155719349	35434927	27	31571											
FAT1	2195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	187538911	187538911	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	187538911	C	A	187538911	2	1	542	1	0	0	0	0	0	0	0	1	5696	639	23	4		4	FAT1	4	187538911	Silent	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	31819562	187538911	3615365	28	31572											
PDZD2	23037	broad.mit.edu;hgsc.bcm.edu	37	5	32000300	32000300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	32000300	G	A	32000300	3	1	542	1	0	0	0	0	1	0	0	0	11708	1261	44	2	1191	2	PDZD2	5	32000300	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08		32000300	148914960	29	31573											
NNT	23530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	43615986	43615986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	43615986	C	T	43615986	3	4	542	1	0	0	0	0	1	0	0	0	10517	826	29	2	428	2	NNT	5	43615986	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	11615686	43615986	137299274	30	31574											
ISL1	3670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	50685733	50685733	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	50685733	G	A	50685733	2	1	542	1	0	0	0	0	0	0	0	1	7863	962	34	2		2	ISL1	5	50685733	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	7069747	50685733	130229527	31	31575											
CHSY3	337876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	129520719	129520719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	129520719	C	G	129520719	3	3	542	1	0	0	0	0	1	0	0	0	3415	874	31	4	1894	4	CHSY3	5	129520719	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	78834986	129520719	51394541	32	31576											
NDST1	3340	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	149932854	149932854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	149932854	T	C	149932854	3	2	542	1	0	0	0	0	1	0	0	0	10262	1609	56	3	2663	3	NDST1	5	149932854	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	20412135	149932854	30982406	33	31577											
BNIP1	662	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	172578593	172578593	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	172578593	A	T	172578593	3	4	542	1	0	0	0	0	1	0	0	0	1476	449	16	5	212	5	BNIP1	5	172578593	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	22645739	172578593	8336667	34	31578											
SOX4	6659	broad.mit.edu;hgsc.bcm.edu	37	6	21595027	21595027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	21595027	G	A	21595027	3	1	542	1	0	0	0	0	1	0	0	0	14966	1059	37	1	264	1	SOX4	6	21595027	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08		21595027	149520040	35	31579											
NEU1	4758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	31828358	31828358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	31828358	C	T	31828358	3	4	542	1	0	0	0	0	1	0	0	0	10348	739	26	2	603	2	NEU1	6	31828358	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	10233331	31828358	139286709	36	31580											
CREB5	9586	broad.mit.edu	37	7	28610069	28610069	+	Silent	SNP	C	T	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	28610069	T	T	28610069	2	4	542	1	0	0	0	0	0	0	0	1	3862	477	17	2		2	CREB5	7	28610069	Silent	SNP	C	TCGA-CJ-6033-01A-11D-1669-08		28610069	130528594	37	31581											
SAMD9	54809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92734661	92734661	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	92734661	G	A	92734661	2	1	542	1	0	0	0	0	0	0	0	1	13839	1280	45	2		2	SAMD9	7	92734661	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	64124592	92734661	66404002	38	31582											
POP7	10248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100304462	100304462	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	100304462	A	C	100304462	3	2	542	1	0	0	0	0	1	0	0	0	12261	11	1	5	11	5	POP7	7	100304462	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	7569801	100304462	58834201	39	31583											
DLD	1738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	107556003	107556003	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	107556003	G	C	107556003	3	2	542	1	0	0	0	0	1	0	0	0	4553	1261	44	4	771	4	DLD	7	107556003	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	7251541	107556003	51582660	40	31584											
WDR91	29062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134889161	134889161	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	134889161	A	G	134889161	2	3	542	1	0	0	0	0	0	0	0	1	17350	214	8	3		3	WDR91	7	134889161	Silent	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	27333158	134889161	24249502	41	31585											
VCPIP1	80124	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67546928	67546928	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	67546928	T	C	67546928	2	2	542	1	0	0	0	0	0	0	0	1	17153	1490	52	3		3	VCPIP1	8	67546928	Silent	SNP	T	TCGA-CJ-6033-01A-11D-1669-08		67546928	78817094	42	31586											
OSGIN2	734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	90937536	90937536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	90937536	A	G	90937536	3	3	542	1	0	0	0	0	1	0	0	0	11297	363	13	3	1448	3	OSGIN2	8	90937536	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	23390608	90937536	55426486	43	31587											
PTK2	5747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	141712777	141712777	+	Silent	SNP	G	G	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	141712777	G	T	141712777	2	4	542	1	0	0	0	0	0	0	0	1	12773	1280	45	4		4	PTK2	8	141712777	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	50775241	141712777	4651245	44	31588											
EPPK1	83481	broad.mit.edu;hgsc.bcm.edu	37	8	144941623	144941623	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	144941623	C	A	144941623	2	1	542	1	0	0	0	0	0	0	0	1	5192	755	27	4		4	EPPK1	8	144941623	Silent	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	3228846	144941623	1422399	45	31589											
KIAA1432	57589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	5763502	5763502	+	Silent	SNP	G	G	A	rs149258225		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	5763502	G	A	5763502	2	1	542	1	0	0	0	0	0	0	0	1	8240	933	33	2		2	KIAA1432	9	5763502	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08		5763502	135449929	46	31590											
IFNA14	3448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	21239700	21239700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	21239700	C	A	21239700	3	1	542	1	0	0	0	0	1	0	0	0	7541	478	17	4	338	4	IFNA14	9	21239700	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	15476198	21239700	119973731	47	31591											
GALT	2592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	34649524	34649524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	34649524	T	C	34649524	3	2	542	1	0	0	0	0	1	0	0	0	6237	1464	51	3	1060	3	GALT	9	34649524	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	13409824	34649524	106563907	48	31592											
DNAJC25	548645	broad.mit.edu;hgsc.bcm.edu	37	9	114411754	114411754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	114411754	T	C	114411754	3	2	542	1	0	0	0	0	1	0	0	0	4645	1522	53	3	521	3	DNAJC25	9	114411754	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	79762230	114411754	26801677	49	31593											
ZNF883	169834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	115759684	115759684	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	115759684	T	G	115759684	3	3	542	1	0	0	0	0	1	0	0	0	18210	1493	52	5	285	5	ZNF883	9	115759684	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	1347930	115759684	25453747	50	31594											
FRMPD2	143162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	49459680	49459680	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	49459680	G	C	49459680	3	2	542	1	0	0	0	0	1	0	0	0	6065	971	34	4	3961	4	FRMPD2	10	49459680	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08		49459680	86075067	51	31595											
IFIT2	3433	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	91066668	91066668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	91066668	G	T	91066668	3	4	542	1	0	0	0	0	1	0	0	0	7530	1087	38	4	961	4	IFIT2	10	91066668	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	41606988	91066668	44468079	52	31596											
KDM2A	22992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	67017906	67017906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	67017906	C	T	67017906	3	4	542	1	0	0	0	0	1	0	0	0	8131	536	19	1	2467	1	KDM2A	11	67017906	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08		67017906	67988610	53	31597											
MRE11A	4361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	94169018	94169018	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	94169018	G	A	94169018	2	1	542	1	0	0	0	0	0	0	0	1	9766	1335	47	2		2	MRE11A	11	94169018	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	27151112	94169018	40837498	54	31598											
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117647629	117647629	+	Silent	SNP	G	G	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	117647629	G	T	117647629	2	4	542	1	0	0	0	0	0	0	0	1	4771	1115	39	4		4	DSCAML1	11	117647629	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	23478611	117647629	17358887	55	31599											
ACSS3	79611	broad.mit.edu;ucsc.edu	37	12	81647354	81647354	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	81647354	T	T	81647354	4	4	542	1	0	0	0	0	0	1	0	0	190	876	31	1	1958	1	ACSS3	12	81647354	Nonsense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08		81647354	52204541	56	31600											
ISCU	23479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	108960983	108960983	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	108960983	T	C	108960983	2	2	542	1	0	0	0	0	0	0	0	1	7859	1509	53	3		3	ISCU	12	108960983	Silent	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	27313629	108960983	24890912	57	31601											
HIF1A	3091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	62187224	62187224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	62187224	C	A	62187224	3	1	542	1	0	0	0	0	1	0	0	0	7110	913	32	4	166	4	HIF1A	14	62187224	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08		62187224	45162316	58	31602											
SLC8A3	6547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	70633462	70633462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	70633462	C	T	70633462	3	4	542	1	0	0	0	0	1	0	0	0	14721	623	22	2	1244	2	SLC8A3	14	70633462	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	8446238	70633462	36716078	59	31603											
NGB	58157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	77733013	77733013	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	77733013	T	A	77733013	3	1	542	1	0	0	0	0	1	0	0	0	10399	1681	58	5	137	5	NGB	14	77733013	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	7099551	77733013	29616527	60	31604											
SLC12A6	9990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	34547536	34547536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	34547536	A	G	34547536	3	3	542	1	0	0	0	0	1	0	0	0	14400	43	2	3	2725	3	SLC12A6	15	34547536	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08		34547536	67983856	61	31605											
DUOXA2	405753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45408398	45408398	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	45408398	C	T	45408398	2	4	542	1	0	0	0	0	0	0	0	1	4805	755	27	1		1	DUOXA2	15	45408398	Silent	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	10860862	45408398	57122994	62	31606											
RLBP1	6017	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89760467	89760467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	89760467	C	T	89760467	3	4	542	1	0	0	0	0	1	0	0	0	13401	623	22	2	743	2	RLBP1	15	89760467	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	44352069	89760467	12770925	63	31607											
ATP2C2	9914	hgsc.bcm.edu	37	16	84497252	84497252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	84497252	G	A	84497252	3	1	542	1	0	0	0	0	1	0	0	0	1144	1145	40	1	2861	1	ATP2C2	16	84497252	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08		84497252	5857501	64	31608											
LLGL1	3996	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18135884	18135884	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	18135884	C	T	18135884	2	4	542	1	0	0	0	0	0	0	0	1	8840	639	23	1		1	LLGL1	17	18135884	Silent	SNP	C	TCGA-CJ-6033-01A-11D-1669-08		18135884	63059326	65	31609											
SMCR8	140775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18220787	18220787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	18220787	A	C	18220787	3	2	542	1	0	0	0	0	1	0	0	0	14805	188	7	5	1686	5	SMCR8	17	18220787	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	84903	18220787	62974423	66	31610											
ACE	1636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61559982	61559982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	61559982	C	T	61559982	3	4	542	1	0	0	0	0	1	0	0	0	136	768	27	1	1304	1	ACE	17	61559982	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	43339195	61559982	19635228	67	31611											
ARSG	22901	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	66303656	66303656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	66303656	G	C	66303656	3	2	542	1	0	0	0	0	1	0	0	0	992	1261	44	4	24	4	ARSG	17	66303656	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	4743674	66303656	14891554	68	31612											
SS18	6760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	23619298	23619298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	C	23619298	T	C	23619298	3	2	542	1	0	0	0	0	1	0	0	0	15187	1406	49	3	550	3	SS18	18	23619298	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08		23619298	54457950	69	31613											
SLC14A2	8170	hgsc.bcm.edu;ucsc.edu	37	18	43246949	43246949	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	-	43246949	T	-	43246949	7	5	542	1	0	1	0	1	0	0	0	0	14410	1493	52	0	1653	0	SLC14A2	18	43246949	Frame_Shift_Del	DEL	T	TCGA-CJ-6033-01A-11D-1669-08	19627651	43246949	34830299	70	31614	397	2									
SLC14A2	8170	hgsc.bcm.edu	37	18	43246952	43246952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	43246952	C	A	43246952	3	1	542	1	0	0	0	0	1	0	0	0	14410	855	30	4	1656	4	SLC14A2	18	43246952	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	3	43246952	34830296	71	31615	397	2									
DCC	1630	broad.mit.edu;ucsc.edu	37	18	50994332	50994332	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	50994332	A	A	50994332	3	1	542	1	0	0	0	0	1	0	0	0	4284	623	22	4	3786	4	DCC	18	50994332	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	7747380	50994332	27082916	72	31616											
ZNF793	390927	broad.mit.edu	37	19	38027920	38027920	+	Silent	SNP	G	A	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	38027920	A	A	38027920	2	1	542	1	0	0	0	0	0	0	0	1	18177	1161	41	2		2	ZNF793	19	38027920	Silent	SNP	G	TCGA-CJ-6033-01A-11D-1669-08		38027920	21101063	73	31617											
CEACAM3	1084	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42301589	42301589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	42301589	G	A	42301589	3	1	542	1	0	0	0	0	1	0	0	0	3195	1377	48	2	139	2	CEACAM3	19	42301589	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	4273669	42301589	16827394	74	31618											
LILRB4	11006	broad.mit.edu	37	19	55176277	55176277	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	55176277	T	T	55176277	3	4	542	1	0	0	0	0	1	0	0	0	8800	623	22	2	701	2	LILRB4	19	55176277	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	12874688	55176277	3952706	75	31619											
MYLK2	85366	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30418677	30418677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	30418677	T	G	30418677	3	3	542	1	0	0	0	0	1	0	0	0	10064	1841	64	5	1310	5	MYLK2	20	30418677	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08		30418677	32606843	76	31620											
APOL5	80831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	36123236	36123236	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	36123236	C	G	36123236	3	3	542	1	0	0	0	0	1	0	0	0	809	594	21	4	1131	4	APOL5	22	36123236	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08		36123236	15181330	77	31621											
DUSP21	63904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	44703517	44703517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	44703517	C	T	44703517	3	4	542	1	0	0	0	0	1	0	0	0	4822	884	31	1	141	1	DUSP21	23	44703517	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08		44703517	110567043	78	31622											
SPIN3	169981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	57020876	57020876	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	G	57020876	C	G	57020876	3	3	542	1	0	0	0	0	1	0	0	0	15067	913	32	4	275	4	SPIN3	23	57020876	Missense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	12317359	57020876	98249684	79	31623											
KIAA2022	340533	broad.mit.edu;ucsc.edu	37	X	73961521	73961521	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	73961521	A	A	73961521	3	1	542	1	0	0	0	0	1	0	0	0	8276	1722	60	5	1687	5	KIAA2022	23	73961521	Missense_Mutation	SNP	T	TCGA-CJ-6033-01A-11D-1669-08	16940645	73961521	81309039	80	31624											
TMEM31	203562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	102968576	102968576	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	102968576	C	T	102968576	4	4	542	1	0	0	0	0	0	1	0	0	16167	885	31	1	163	1	TMEM31	23	102968576	Nonsense_Mutation	SNP	C	TCGA-CJ-6033-01A-11D-1669-08	29007055	102968576	52301984	81	31625											
DOCK11	139818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	117700143	117700143	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	117700143	A	T	117700143	3	4	542	1	0	0	0	0	1	0	0	0	4688	130	5	5	899	5	DOCK11	23	117700143	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	14731567	117700143	37570417	82	31626											
DOCK11	139818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	117819736	117819736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	A	117819736	G	A	117819736	3	1	542	1	0	0	0	0	1	0	0	0	4688	1058	37	1	6398	1	DOCK11	23	117819736	Missense_Mutation	SNP	G	TCGA-CJ-6033-01A-11D-1669-08	119593	117819736	37450824	83	31627											
MMGT1	93380	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135047254	135047254	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6033-01A-11D-1669-08	TCGA-CJ-6033-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ce9042-f63c-4a93-a82d-f21977bd9bcb	6ddcf971-b6b2-4ea9-a14e-22451f4b519e	T	135047254	A	T	135047254	3	4	542	1	0	0	0	0	1	0	0	0	9654	246	9	5	74	5	MMGT1	23	135047254	Missense_Mutation	SNP	A	TCGA-CJ-6033-01A-11D-1669-08	17227518	135047254	20223306	84	31628											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11169375	11169375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	11169375	A	C	11169375	3	2	543	1	0	0	0	0	1	0	0	0	9961	358	13	5	161	5	MTOR	1	11169375	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08		11169375	238081246	1	31629											
SYNC	81493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33149611	33149611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	33149611	C	T	33149611	3	4	543	1	0	0	0	0	1	0	0	0	15455	695	24	2	80	2	SYNC	1	33149611	Missense_Mutation	SNP	C	TCGA-CW-5580-01A-01D-1669-08	21980236	33149611	216101010	2	31630											
RIMKLA	284716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	42880337	42880337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	42880337	G	A	42880337	3	1	543	1	0	0	0	0	1	0	0	0	13378	942	33	2	886	2	RIMKLA	1	42880337	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	9730726	42880337	206370284	3	31631											
USP33	23032	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	78195568	78195568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	78195568	T	C	78195568	3	2	543	1	0	0	0	0	1	0	0	0	17076	1725	60	3	2117	3	USP33	1	78195568	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08	35315231	78195568	171055053	4	31632											
ST7L	54879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	113098583	113098583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	113098583	C	T	113098583	3	4	543	1	0	0	0	0	1	0	0	0	15242	826	29	2	479	2	ST7L	1	113098583	Missense_Mutation	SNP	C	TCGA-CW-5580-01A-01D-1669-08	34903015	113098583	136152038	5	31633											
TRIM33	51592	hgsc.bcm.edu;ucsc.edu	37	1	114948266	114948267	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	114948267	-	T	114948266	7	5	543	1	0	1	1	0	0	0	0	0	16519	217	8	0	873	0	TRIM33	1	114948266	Frame_Shift_Ins	INS	-	TCGA-CW-5580-01A-01D-1669-08	1849683	114948266	134302355	6	31634											
TTC24	164118	broad.mit.edu;hgsc.bcm.edu	37	1	156553240	156553240	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	156553240	C	T	156553240	4	4	543	1	0	0	0	0	0	1	0	0	16704	827	29	2	1164	2	TTC24	1	156553240	Nonsense_Mutation	SNP	C	TCGA-CW-5580-01A-01D-1669-08	41604974	156553240	92697381	7	31635											
COPA	1314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160310032	160310032	+	Silent	SNP	C	C	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	160310032	C	A	160310032	2	1	543	1	0	0	0	0	0	0	0	1	3729	610	22	4		4	COPA	1	160310032	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	3756792	160310032	88940589	8	31636											
CPSF3	51692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	9580730	9580730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	9580730	G	A	9580730	3	1	543	1	0	0	0	0	1	0	0	0	3828	1290	45	2	901	2	CPSF3	2	9580730	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08		9580730	233618643	9	31637											
IFT172	26160	hgsc.bcm.edu;ucsc.edu	37	2	27702943	27702946	+	Frame_Shift_Del	DEL	ATAA	ATAA	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	ATAA	ATAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	27702946	ATAA	-	27702943	7	5	543	1	0	1	0	1	0	0	0	0	7564	449	16	0	4550	0	IFT172	2	27702943	Frame_Shift_Del	DEL	ATAA	TCGA-CW-5580-01A-01D-1669-08	18122213	27702943	215496430	10	31638											
SUPT7L	9913	broad.mit.edu;hgsc.bcm.edu	37	2	27876614	27876614	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	27876614	C	G	27876614	3	3	543	1	0	0	0	0	1	0	0	0	15413	521	18	4	265	4	SUPT7L	2	27876614	Missense_Mutation	SNP	C	TCGA-CW-5580-01A-01D-1669-08	173671	27876614	215322759	11	31639											
XDH	7498	broad.mit.edu;ucsc.edu	37	2	31598321	31598321	+	Silent	SNP	G	A	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	31598321	A	A	31598321	2	1	543	1	0	0	0	0	0	0	0	1	17438	1311	46	2		2	XDH	2	31598321	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08	3721707	31598321	211601052	12	31640											
ETAA1	54465	hgsc.bcm.edu;ucsc.edu	37	2	67637078	67637096	+	Frame_Shift_Del	DEL	GAAATTCAGAGAAAAAGAC	GAAATTCAGAGAAAAAGAC	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	GAAATTCAGAGAAAAAGAC	GAAATTCAGAGAAAAAGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	67637096	GAAATTCAGAGAAAAAGAC	-	67637078	7	5	543	1	0	1	0	1	0	0	0	0	5269	943	33	0	2711	0	ETAA1	2	67637078	Frame_Shift_Del	DEL	GAAATTCAGAGAAAAAGAC	TCGA-CW-5580-01A-01D-1669-08	36038757	67637078	175562295	13	31641											
CLASP1	23332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	122168512	122168512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	122168512	G	A	122168512	3	1	543	1	0	0	0	0	1	0	0	0	3456	1000	35	2	2354	2	CLASP1	2	122168512	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	54531434	122168512	121030861	14	31642											
SCN3A	6328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	165952091	165952091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	165952091	A	G	165952091	3	3	543	1	0	0	0	0	1	0	0	0	13931	14	1	3	1657	3	SCN3A	2	165952091	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	43783579	165952091	77247282	15	31643											
RBM45	129831	hgsc.bcm.edu	37	2	178977303	178977304	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	178977304	-	G	178977303	7	5	543	1	0	1	1	0	0	0	0	0	13152	755	27	0	32	0	RBM45	2	178977303	Frame_Shift_Ins	INS	-	TCGA-CW-5580-01A-01D-1669-08	13025212	178977303	64222070	16	31644											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179416718	179416718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	179416718	G	T	179416718	3	4	543	1	0	0	0	0	1	0	0	0	16747	1368	48	4	17182	4	TTN	2	179416718	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	439415	179416718	63782655	17	31645											
GPR1	2825	hgsc.bcm.edu;ucsc.edu	37	2	207041953	207041953	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	207041953	T	-	207041953	7	5	543	1	0	1	0	1	0	0	0	0	6628	1725	60	0	1052	0	GPR1	2	207041953	Frame_Shift_Del	DEL	T	TCGA-CW-5580-01A-01D-1669-08	27625235	207041953	36157420	18	31646											
SCG2	7857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	224462769	224462769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	224462769	G	T	224462769	3	4	543	1	0	0	0	0	1	0	0	0	13904	1174	41	4	625	4	SCG2	2	224462769	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	17420816	224462769	18736604	19	31647											
ANKMY1	51281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	241496637	241496637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	241496637	G	A	241496637	3	1	543	1	0	0	0	0	1	0	0	0	634	1174	41	2	3044	2	ANKMY1	2	241496637	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	17033868	241496637	1702736	20	31648											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188245	10188245	+	Missense_Mutation	SNP	G	G	T	rs104893830	bycluster;alternate_allele	TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	10188245	G	T	10188245	3	4	543	1	0	0	0	0	1	0	0	0	17174	1261	44	4	394	4	VHL	3	10188245	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08		10188245	187834185	21	31649											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47162024	47162024	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	47162024	G	A	47162024	4	1	543	1	0	0	0	0	0	1	0	0	14144	1328	46	2	3668	2	SETD2	3	47162024	Nonsense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	36973779	47162024	150860406	22	31650											
BAP1	8314	broad.mit.edu	37	3	52443747	52443747	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	52443747	G	G	52443747	3	3	543	1	0	0	0	0	1	0	0	0	1311	188	7	3	2203	3	BAP1	3	52443747	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	5281723	52443747	145578683	23	31651											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52588748	52588748	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	52588748	G	-	52588748	7	5	543	1	0	1	0	1	0	0	0	0	11498	1348	47	0	484	0	PBRM1	3	52588748	Frame_Shift_Del	DEL	G	TCGA-CW-5580-01A-01D-1669-08	145001	52588748	145433682	24	31652											
GATA2	2624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128204803	128204803	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	128204803	T	A	128204803	3	1	543	1	0	0	0	0	1	0	0	0	6261	1638	57	5	820	5	GATA2	3	128204803	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08	75616055	128204803	69817627	25	31653											
PLXND1	23129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	129286540	129286540	+	Splice_Site	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	129286540	C	T	129286540	5	4	543	1	0	0	0	0	0	0	1	0	12134	521	18	2	1867	2	PLXND1	3	129286540	Splice_Site	SNP	C	TCGA-CW-5580-01A-01D-1669-08	1081737	129286540	68735890	26	31654											
GPR149	344758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	154146980	154146980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	154146980	G	T	154146980	3	4	543	1	0	0	0	0	1	0	0	0	6661	1377	48	4	1786	4	GPR149	3	154146980	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	24860440	154146980	43875450	27	31655											
SLC7A14	57709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	170198277	170198277	+	Silent	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	170198277	G	A	170198277	2	1	543	1	0	0	0	0	0	0	0	1	14709	1164	41	2		2	SLC7A14	3	170198277	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08	16051297	170198277	27824153	28	31656											
CLCN2	1181	broad.mit.edu;ucsc.edu	37	3	184070571	184070571	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	184070571	G	G	184070571	3	3	543	1	0	0	0	0	1	0	0	0	3465	304	11	3	549	3	CLCN2	3	184070571	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	13872294	184070571	13951859	29	31657											
MUC4	4585	broad.mit.edu;hgsc.bcm.edu	37	3	195538680	195538680	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	195538680	C	T	195538680	2	4	543	1	0	0	0	0	0	0	0	1	9985	610	22	2		2	MUC4	3	195538680	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	11468109	195538680	2483750	30	31658											
LRCH3	84859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	197557694	197557694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	197557694	A	G	197557694	3	3	543	1	0	0	0	0	1	0	0	0	8941	101	4	3	967	3	LRCH3	3	197557694	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	2019014	197557694	464736	31	31659											
CNGA1	1259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	47944154	47944154	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	47944154	T	A	47944154	3	1	543	1	0	0	0	0	1	0	0	0	3598	1783	62	5	1623	5	CNGA1	4	47944154	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08		47944154	143210122	32	31660											
DMXL1	1657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	118560454	118560454	+	Silent	SNP	T	T	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	118560454	T	C	118560454	2	2	543	1	0	0	0	0	0	0	0	1	4596	1538	54	3		3	DMXL1	5	118560454	Silent	SNP	T	TCGA-CW-5580-01A-01D-1669-08		118560454	62354806	33	31661											
GRIA1	2890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	153149881	153149881	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	153149881	A	T	153149881	3	4	543	1	0	0	0	0	1	0	0	0	6774	217	8	5	2226	5	GRIA1	5	153149881	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	34589427	153149881	27765379	34	31662											
RARS	5917	broad.mit.edu	37	5	167927655	167927655	+	Silent	SNP	A	T	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	167927655	T	T	167927655	2	4	543	1	0	0	0	0	0	0	0	1	13071	407	15	5		5	RARS	5	167927655	Silent	SNP	A	TCGA-CW-5580-01A-01D-1669-08	14777774	167927655	12987605	35	31663											
ZNF354B	117608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	178293302	178293302	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	178293302	C	T	178293302	2	4	543	1	0	0	0	0	0	0	0	1	17877	796	28	2		2	ZNF354B	5	178293302	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	10365647	178293302	2621958	36	31664											
SLC35B3	51000	broad.mit.edu;hgsc.bcm.edu	37	6	8422803	8422803	+	Silent	SNP	C	C	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	8422803	C	G	8422803	2	3	543	1	0	0	0	0	0	0	0	1	14590	494	18	4		4	SLC35B3	6	8422803	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08		8422803	162692264	37	31665											
CUL7	9820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43020004	43020004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	43020004	A	C	43020004	3	2	543	1	0	0	0	0	1	0	0	0	4062	362	13	5	4769	5	CUL7	6	43020004	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	34597201	43020004	128095063	38	31666											
GRIK2	2898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	102503283	102503283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	102503283	A	G	102503283	3	3	543	1	0	0	0	0	1	0	0	0	6781	14	1	3	2448	3	GRIK2	6	102503283	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	59483279	102503283	68611784	39	31667											
EIF3B	8662	broad.mit.edu;ucsc.edu	37	7	2404084	2404084	+	Silent	SNP	A	G	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	2404084	G	G	2404084	2	3	543	1	0	0	0	0	0	0	0	1	5015	436	16	3		3	EIF3B	7	2404084	Silent	SNP	A	TCGA-CW-5580-01A-01D-1669-08		2404084	156734579	40	31668											
ZNF107	51427	broad.mit.edu;hgsc.bcm.edu	37	7	64167976	64167976	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	64167976	A	-	64167976	7	5	543	1	0	1	0	1	0	0	0	0	17727	247	9	0	1300	0	ZNF107	7	64167976	Frame_Shift_Del	DEL	A	TCGA-CW-5580-01A-01D-1669-08	61763892	64167976	94970687	41	31669											
WBSCR17	64409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	71177037	71177037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	71177037	G	A	71177037	3	1	543	1	0	0	0	0	1	0	0	0	17276	1319	46	2	1745	2	WBSCR17	7	71177037	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	7009061	71177037	87961626	42	31670	398	2									
WBSCR17	64409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	71177038	71177038	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	71177038	C	T	71177038	2	4	543	1	0	0	0	0	0	0	0	1	17276	747	26	2		2	WBSCR17	7	71177038	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	1	71177038	87961625	43	31671	398	2									
NOS3	4846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150697631	150697631	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	150697631	C	T	150697631	2	4	543	1	0	0	0	0	0	0	0	1	10551	680	24	2		2	NOS3	7	150697631	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	79520593	150697631	8441032	44	31672											
GALNTL5	168391	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151684336	151684336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	151684336	G	A	151684336	3	1	543	1	0	0	0	0	1	0	0	0	6231	971	34	2	642	2	GALNTL5	7	151684336	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	986705	151684336	7454327	45	31673											
VPS37A	137492	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17125809	17125809	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	17125809	T	G	17125809	3	3	543	1	0	0	0	0	1	0	0	0	17217	1693	59	5	253	5	VPS37A	8	17125809	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08		17125809	129238213	46	31674											
PTAR1	375743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	72338543	72338543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	72338543	G	A	72338543	3	1	543	1	0	0	0	0	1	0	0	0	12734	942	33	2	574	2	PTAR1	9	72338543	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08		72338543	68874888	47	31675											
GRIN3A	116443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	104341505	104341505	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	104341505	C	T	104341505	2	4	543	1	0	0	0	0	0	0	0	1	6790	796	28	2		2	GRIN3A	9	104341505	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	32002962	104341505	36871926	48	31676											
CEP110	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123900914	123900914	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	123900914	A	T	123900914	3	4	543	1	0	0	0	0	1	0	0	0	3247	304	11	5	2348	5	CEP110	9	123900914	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	19559409	123900914	17312517	49	31677											
A1CF	29974	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	52566613	52566613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	52566613	G	A	52566613	3	1	543	1	0	0	0	0	1	0	0	0	2	1232	43	2	127	2	A1CF	10	52566613	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08		52566613	82968134	50	31678											
ECHS1	1892	broad.mit.edu;hgsc.bcm.edu	37	10	135184121	135184121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	135184121	C	T	135184121	3	4	543	1	0	0	0	0	1	0	0	0	4898	893	31	1	671	1	ECHS1	10	135184121	Missense_Mutation	SNP	C	TCGA-CW-5580-01A-01D-1669-08	82617508	135184121	350626	51	31679											
MUC5B	727897	hgsc.bcm.edu	37	11	1271392	1271392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	1271392	G	A	1271392	3	1	543	1	0	0	0	0	1	0	0	0	9986	971	34	2	13413	2	MUC5B	11	1271392	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08		1271392	133735124	52	31680											
EHD1	10938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64645859	64645859	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	64645859	C	T	64645859	2	4	543	1	0	0	0	0	0	0	0	1	4979	726	26	2		2	EHD1	11	64645859	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	63374467	64645859	70360657	53	31681											
PDZD3	79849	broad.mit.edu;hgsc.bcm.edu	37	11	119059909	119059909	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	119059909	G	C	119059909	3	2	543	1	0	0	0	0	1	0	0	0	11709	1319	46	4	1521	4	PDZD3	11	119059909	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	54414050	119059909	15946607	54	31682											
PPFIBP1	8496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	27824429	27824429	+	Silent	SNP	T	T	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	27824429	T	C	27824429	2	2	543	1	0	0	0	0	0	0	0	1	12320	1596	56	3		3	PPFIBP1	12	27824429	Silent	SNP	T	TCGA-CW-5580-01A-01D-1669-08		27824429	106027466	55	31683											
DENND5B	160518	hgsc.bcm.edu;ucsc.edu	37	12	31540603	31540603	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	31540603	A	-	31540603	7	5	543	1	0	1	0	1	0	0	0	0	4439	242	9	0	69	0	DENND5B	12	31540603	Frame_Shift_Del	DEL	A	TCGA-CW-5580-01A-01D-1669-08	3716174	31540603	102311292	56	31684											
CCDC53	51019	hgsc.bcm.edu;ucsc.edu	37	12	102433684	102433684	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	102433684	C	-	102433684	7	5	543	1	0	1	0	1	0	0	0	0	2825	855	30	0	130	0	CCDC53	12	102433684	Frame_Shift_Del	DEL	C	TCGA-CW-5580-01A-01D-1669-08	70893081	102433684	31418211	57	31685											
STAB2	55576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104071251	104071251	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	104071251	C	T	104071251	2	4	543	1	0	0	0	0	0	0	0	1	15250	697	25	2		2	STAB2	12	104071251	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	1637567	104071251	29780644	58	31686											
DHX37	57647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	125438720	125438720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	125438720	T	C	125438720	3	2	543	1	0	0	0	0	1	0	0	0	4512	1551	54	3	1018	3	DHX37	12	125438720	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08	21367469	125438720	8413175	59	31687											
NOC4L	79050	broad.mit.edu;ucsc.edu	37	12	132636049	132636049	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	132636049	C	C	132636049	3	2	543	1	0	0	0	0	1	0	0	0	10522	1696	59	3	1140	3	NOC4L	12	132636049	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08	7197329	132636049	1215846	60	31688											
NUPL1	9818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25899186	25899186	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	25899186	T	G	25899186	3	3	543	1	0	0	0	0	1	0	0	0	10781	1461	51	5	1049	5	NUPL1	13	25899186	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08		25899186	89270692	61	31689											
ERCC5	2073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	103528030	103528030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	103528030	T	C	103528030	3	2	543	1	0	0	0	0	1	0	0	0	5218	1638	57	3	3396	3	ERCC5	13	103528030	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08	77628844	103528030	11641848	62	31690											
ACIN1	22985	broad.mit.edu	37	14	23549554	23549554	+	Silent	SNP	G	T	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	23549554	T	T	23549554	2	4	543	1	0	0	0	0	0	0	0	1	142	1219	43	4		4	ACIN1	14	23549554	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08		23549554	83799986	63	31691											
C14orf135	0	broad.mit.edu;ucsc.edu	37	14	60600702	60600703	+	Frame_Shift_Del	DEL	GA	-	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	60600703	-	-	60600702	7	5	543	1	0	1	0	1	0	0	0	0	1747	1161	41	0	2614	0	C14orf135	14	60600702	Frame_Shift_Del	DEL	GA	TCGA-CW-5580-01A-01D-1669-08	37051148	60600702	46748838	64	31692											
SPTB	6710	broad.mit.edu	37	14	65241143	65241143	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	65241143	T	T	65241143	3	4	543	1	0	0	0	0	1	0	0	0	15130	623	22	2	2162	2	SPTB	14	65241143	Missense_Mutation	SNP	C	TCGA-CW-5580-01A-01D-1669-08	4640441	65241143	42108397	65	31693											
RDH11	51109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	68151823	68151823	+	Missense_Mutation	SNP	A	A	G	rs182091562	by1000genomes	TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	68151823	A	G	68151823	3	3	543	1	0	0	0	0	1	0	0	0	13203	72	3	3	201	3	RDH11	14	68151823	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	2910680	68151823	39197717	66	31694											
YLPM1	56252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75248501	75248501	+	Silent	SNP	A	A	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	75248501	A	T	75248501	2	4	543	1	0	0	0	0	0	0	0	1	17498	175	7	5		5	YLPM1	14	75248501	Silent	SNP	A	TCGA-CW-5580-01A-01D-1669-08	7096678	75248501	32101039	67	31695											
TRIP11	9321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	92499570	92499570	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	92499570	T	G	92499570	3	3	543	1	0	0	0	0	1	0	0	0	16567	1783	62	5	5852	5	TRIP11	14	92499570	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08	17251069	92499570	14849970	68	31696											
ATP10A	57194	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	25959134	25959134	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	25959134	C	T	25959134	4	4	543	1	0	0	0	0	0	1	0	0	1116	624	22	2	2516	2	ATP10A	15	25959134	Nonsense_Mutation	SNP	C	TCGA-CW-5580-01A-01D-1669-08		25959134	76572258	69	31697											
LCMT2	9836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43621597	43621597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	43621597	A	G	43621597	3	3	543	1	0	0	0	0	1	0	0	0	8686	246	9	3	973	3	LCMT2	15	43621597	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	17662463	43621597	58909795	70	31698											
SECISBP2L	9728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49293222	49293222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	49293222	G	T	49293222	3	4	543	1	0	0	0	0	1	0	0	0	14020	1165	41	4	1221	4	SECISBP2L	15	49293222	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	5671625	49293222	53238170	71	31699											
MAN2A2	4122	broad.mit.edu;ucsc.edu	37	15	91449980	91449980	+	Silent	SNP	C	A	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	91449980	A	A	91449980	2	1	543	1	0	0	0	0	0	0	0	1	9222	610	22	4		4	MAN2A2	15	91449980	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	42156758	91449980	11081412	72	31700											
IFT140	9742	broad.mit.edu	37	16	1570643	1570643	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	1570643	T	T	1570643	3	4	543	1	0	0	0	0	1	0	0	0	7563	188	7	5	788	5	IFT140	16	1570643	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08		1570643	88784110	73	31701											
ATF7IP2	80063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	10524764	10524764	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	10524764	T	G	10524764	3	3	543	1	0	0	0	0	1	0	0	0	1088	1406	49	5	289	5	ATF7IP2	16	10524764	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08	8954121	10524764	79829989	74	31702											
C16orf78	123970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	49407979	49407979	+	Silent	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	49407979	G	A	49407979	2	1	543	1	0	0	0	0	0	0	0	1	1837	1161	41	2		2	C16orf78	16	49407979	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08	38883215	49407979	40946774	75	31703											
OR3A1	4994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3195481	3195481	+	Silent	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	3195481	G	A	3195481	2	1	543	1	0	0	0	0	0	0	0	1	11044	1219	43	2		2	OR3A1	17	3195481	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08		3195481	77999729	76	31704											
OR1E1	8387	hgsc.bcm.edu	37	17	3301113	3301113	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	3301113	C	-	3301113	7	5	543	1	0	1	0	1	0	0	0	0	10961	507	18	0	356	0	OR1E1	17	3301113	Frame_Shift_Del	DEL	C	TCGA-CW-5580-01A-01D-1669-08	105632	3301113	77894097	77	31705											
GSG2	83903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3629541	3629541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	3629541	A	G	3629541	3	3	543	1	0	0	0	0	1	0	0	0	6829	72	3	3	2314	3	GSG2	17	3629541	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08	328428	3629541	77565669	78	31706											
ACADVL	37	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7125374	7125374	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	7125374	C	T	7125374	2	4	543	1	0	0	0	0	0	0	0	1	116	610	22	2		2	ACADVL	17	7125374	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	3495833	7125374	74069836	79	31707											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11701032	11701032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	11701032	T	C	11701032	3	2	543	1	0	0	0	0	1	0	0	0	4610	1580	55	3	8512	3	DNAH9	17	11701032	Missense_Mutation	SNP	T	TCGA-CW-5580-01A-01D-1669-08	4575658	11701032	69494178	80	31708											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	11835416	11835416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	11835416	G	A	11835416	3	1	543	1	0	0	0	0	1	0	0	0	4610	942	33	2	12445	2	DNAH9	17	11835416	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	134384	11835416	69359794	81	31709											
HNF1B	6928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36091725	36091725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	36091725	G	C	36091725	3	2	543	1	0	0	0	0	1	0	0	0	7259	1252	44	4	791	4	HNF1B	17	36091725	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	24256309	36091725	45103485	82	31710											
CA4	762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	58234007	58234007	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	58234007	C	T	58234007	2	4	543	1	0	0	0	0	0	0	0	1	2520	564	20	2		2	CA4	17	58234007	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	22142282	58234007	22961203	83	31711											
ITGB4	3691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73736440	73736440	+	Silent	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	73736440	G	A	73736440	2	1	543	1	0	0	0	0	0	0	0	1	7904	1333	46	2		2	ITGB4	17	73736440	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08	15502433	73736440	7458770	84	31712											
EPB41L3	23136	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	5406847	5406847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	5406847	A	T	5406847	3	4	543	1	0	0	0	0	1	0	0	0	5156	246	9	5	1013	5	EPB41L3	18	5406847	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08		5406847	72670401	85	31713											
KIAA1632	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	43492338	43492338	+	Silent	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	43492338	G	A	43492338	2	1	543	1	0	0	0	0	0	0	0	1	8256	1277	45	2		2	KIAA1632	18	43492338	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08	38085491	43492338	34584910	86	31714											
OR7A5	26659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14938974	14938974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	14938974	A	G	14938974	3	3	543	1	0	0	0	0	1	0	0	0	11223	304	11	3	883	3	OR7A5	19	14938974	Missense_Mutation	SNP	A	TCGA-CW-5580-01A-01D-1669-08		14938974	44190009	87	31715											
CCDC155	147872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49897747	49897747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	49897747	C	T	49897747	3	4	543	1	0	0	0	0	1	0	0	0	2790	759	27	1	64	1	CCDC155	19	49897747	Missense_Mutation	SNP	C	TCGA-CW-5580-01A-01D-1669-08	34958773	49897747	9231236	88	31716											
LILRB5	10990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54760026	54760026	+	Silent	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	54760026	G	A	54760026	2	1	543	1	0	0	0	0	0	0	0	1	8801	991	35	2		2	LILRB5	19	54760026	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08	4862279	54760026	4368957	89	31717											
NLRP7	199713	broad.mit.edu	37	19	55451068	55451068	+	Silent	SNP	C	T	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	55451068	T	T	55451068	2	4	543	1	0	0	0	0	0	0	0	1	10489	813	29	2		2	NLRP7	19	55451068	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	691042	55451068	3677915	90	31718											
ZNF419	79744	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58005254	58005254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	58005254	G	A	58005254	3	1	543	1	0	0	0	0	1	0	0	0	17908	1319	46	2	1350	2	ZNF419	19	58005254	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	2554186	58005254	1123729	91	31719											
C20orf4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34828159	34828159	+	Silent	SNP	G	G	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	34828159	G	C	34828159	2	2	543	1	0	0	0	0	0	0	0	1	2113	1190	42	4		4	C20orf4	20	34828159	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08		34828159	28197361	92	31720											
RPN2	6185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	35842239	35842239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	35842239	G	T	35842239	3	4	543	1	0	0	0	0	1	0	0	0	13621	1290	45	4	1097	4	RPN2	20	35842239	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	1014080	35842239	27183281	93	31721											
MC3R	4159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	54824370	54824370	+	Silent	SNP	C	C	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	54824370	C	A	54824370	2	1	543	1	0	0	0	0	0	0	0	1	9372	639	23	4		4	MC3R	20	54824370	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	18982131	54824370	8201150	94	31722											
CYP2D6	1565	hgsc.bcm.edu	37	22	42524795	42524795	+	Silent	SNP	A	A	G	rs28371713	bycluster;byfrequency	TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	G	42524795	A	G	42524795	2	3	543	1	0	0	0	0	0	0	0	1	4171	243	9	3		3	CYP2D6	22	42524795	Silent	SNP	A	TCGA-CW-5580-01A-01D-1669-08		42524795	8779771	95	31723											
WWC3	55841	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	10085338	10085338	+	Silent	SNP	C	C	T	rs148094144		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	10085338	C	T	10085338	2	4	543	1	0	0	0	0	0	0	0	1	17425	883	31	1		1	WWC3	23	10085338	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08		10085338	145185222	96	31724											
HCCS	3052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	11139773	11139773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	11139773	G	A	11139773	3	1	543	1	0	0	0	0	1	0	0	0	6997	1145	40	1	672	1	HCCS	23	11139773	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	1054435	11139773	144130787	97	31725											
MAP3K15	389840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	19389075	19389075	+	Splice_Site	SNP	A	A	C	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	C	19389075	A	C	19389075	5	2	543	1	0	0	0	0	0	0	1	0	9256	173	6	5	563	5	MAP3K15	23	19389075	Splice_Site	SNP	A	TCGA-CW-5580-01A-01D-1669-08	8249302	19389075	135881485	98	31726											
DDX53	168400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	23019821	23019821	+	Silent	SNP	C	C	T	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	23019821	C	T	23019821	2	4	543	1	0	0	0	0	0	0	0	1	4373	535	19	1		1	DDX53	23	23019821	Silent	SNP	C	TCGA-CW-5580-01A-01D-1669-08	3630746	23019821	132250739	99	31727											
FAM123B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	63412535	63412535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	63412535	G	A	63412535	3	1	543	1	0	0	0	0	1	0	0	0	5427	1203	42	2	2779	2	FAM123B	23	63412535	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	40392714	63412535	91858025	100	31728											
NKRF	55922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	118723545	118723545	+	Missense_Mutation	SNP	G	G	T	rs140452307	byfrequency;alternate_allele	TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	T	118723545	G	T	118723545	3	4	543	1	0	0	0	0	1	0	0	0	10454	1116	39	4	233	4	NKRF	23	118723545	Missense_Mutation	SNP	G	TCGA-CW-5580-01A-01D-1669-08	55311010	118723545	36547015	101	31729											
ODZ1	0	hgsc.bcm.edu;ucsc.edu	37	X	123556363	123556363	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	-	123556363	G	-	123556363	7	5	543	1	0	1	0	1	0	0	0	0	10841	1335	47	0	4004	0	ODZ1	23	123556363	Frame_Shift_Del	DEL	G	TCGA-CW-5580-01A-01D-1669-08	4832818	123556363	31714197	102	31730											
DCAF12L1	139170	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	125686496	125686496	+	Silent	SNP	G	G	A	novel		TCGA-CW-5580-01A-01D-1669-08	TCGA-CW-5580-11A-02D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ed3ae-aa80-453a-95be-0af96a7bc4e3	54af26e6-d457-44ae-b574-4e74df45fd7c	A	125686496	G	A	125686496	2	1	543	1	0	0	0	0	0	0	0	1	4266	1136	40	1		1	DCAF12L1	23	125686496	Silent	SNP	G	TCGA-CW-5580-01A-01D-1669-08	2130133	125686496	29584064	103	31731											
CSMD2	114784	broad.mit.edu;ucsc.edu	37	1	34189862	34189862	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	34189862	A	A	34189862	3	1	544	1	0	0	0	0	1	0	0	0	3947	623	22	4	7851	4	CSMD2	1	34189862	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10		34189862	215060759	1	31732											
THBS3	7059	broad.mit.edu;hgsc.bcm.edu	37	1	155172612	155172612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	155172612	G	T	155172612	3	4	544	1	0	0	0	0	1	0	0	0	15867	1368	48	4	1986	4	THBS3	1	155172612	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10	120982750	155172612	94078009	2	31733	399	2									
THBS3	7059	broad.mit.edu;hgsc.bcm.edu	37	1	155172613	155172613	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	155172613	T	A	155172613	3	1	544	1	0	0	0	0	1	0	0	0	15867	1667	58	5	1987	5	THBS3	1	155172613	Missense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10	1	155172613	94078008	3	31734	399	2									
ZBTB41	360023	hgsc.bcm.edu;ucsc.edu	37	1	197159958	197159959	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	197159959	AA	-	197159958	7	5	544	1	0	1	0	1	0	0	0	0	17555	243	9	0	1429	0	ZBTB41	1	197159958	Frame_Shift_Del	DEL	AA	TCGA-CW-5581-01A-02D-1534-10	41987345	197159958	52090663	4	31735											
TNNI1	7135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201384351	201384351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	201384351	A	G	201384351	3	3	544	1	0	0	0	0	1	0	0	0	16338	304	11	3	536	3	TNNI1	1	201384351	Missense_Mutation	SNP	A	TCGA-CW-5581-01A-02D-1534-10	4224393	201384351	47866270	5	31736											
JMJD4	65094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	227921679	227921679	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	227921679	C	T	227921679	4	4	544	1	0	0	0	0	0	1	0	0	7958	740	26	2	786	2	JMJD4	1	227921679	Nonsense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	26537328	227921679	21328942	6	31737											
LPIN1	23175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11919652	11919652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	11919652	G	A	11919652	3	1	544	1	0	0	0	0	1	0	0	0	8925	1116	39	1	748	1	LPIN1	2	11919652	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10		11919652	231279721	7	31738											
TRMT61B	55006	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	29073074	29073074	+	Silent	SNP	T	T	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	29073074	T	C	29073074	2	2	544	1	0	0	0	0	0	0	0	1	16582	1722	60	3		3	TRMT61B	2	29073074	Silent	SNP	T	TCGA-CW-5581-01A-02D-1534-10	17153422	29073074	214126299	8	31739											
LTBP1	4052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	33622348	33622348	+	Silent	SNP	C	C	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	33622348	C	G	33622348	2	3	544	1	0	0	0	0	0	0	0	1	9080	898	31	4		4	LTBP1	2	33622348	Silent	SNP	C	TCGA-CW-5581-01A-02D-1534-10	4549274	33622348	209577025	9	31740											
USP34	9736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61450407	61450407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	61450407	G	T	61450407	3	4	544	1	0	0	0	0	1	0	0	0	17077	1368	48	4	3092	4	USP34	2	61450407	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10	27828059	61450407	181748966	10	31741											
RGPD1	400966	broad.mit.edu	37	2	88125182	88125182	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	88125182	G	G	88125182	3	3	544	1	0	0	0	0	1	0	0	0	13298	603	21	4		4	RGPD1	2	88125182	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	26674775	88125182	155074191	11	31742											
LYG1	129530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	99901199	99901199	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	99901199	C	A	99901199	4	1	544	1	0	0	0	0	0	1	0	0	9111	922	32	4	174	4	LYG1	2	99901199	Nonsense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	11776017	99901199	143298174	12	31743											
EPHA6	285220	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	97198177	97198177	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	97198177	G	C	97198177	3	2	544	1	0	0	0	0	1	0	0	0	5173	933	33	4	2145	4	EPHA6	3	97198177	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10		97198177	100824253	13	31744											
CBLB	868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	105400639	105400639	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	105400639	A	-	105400639	7	5	544	1	0	1	0	1	0	0	0	0	2703	217	8	0	743	0	CBLB	3	105400639	Frame_Shift_Del	DEL	A	TCGA-CW-5581-01A-02D-1534-10	8202462	105400639	92621791	14	31745											
ATP6V1A	523	hgsc.bcm.edu;ucsc.edu	37	3	113528254	113528254	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	113528254	T	-	113528254	7	5	544	1	0	1	0	1	0	0	0	0	1177	1493	52	0	1888	0	ATP6V1A	3	113528254	Frame_Shift_Del	DEL	T	TCGA-CW-5581-01A-02D-1534-10	8127615	113528254	84494176	15	31746											
MUC4	4585	hgsc.bcm.edu	37	3	195506102	195506102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	195506102	C	T	195506102	3	4	544	1	0	0	0	0	1	0	0	0	9985	884	31	1		1	MUC4	3	195506102	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	81977848	195506102	2516328	16	31747			1	64		3	3	6820	N	T_GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC_C	9.539003e-05
MUC4	4585	hgsc.bcm.edu	37	3	195510060	195510107	+	In_Frame_Del	DEL	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	195510107	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	-	195510060	7	5	544	1	0	1	0	1	0	0	0	0	9985	1368	48	0		0	MUC4	3	195510060	In_Frame_Del	DEL	GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC	TCGA-CW-5581-01A-02D-1534-10	3958	195510060	2512370	17	31748			1	64		3	3	6820	N	T_GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC_C	9.539003e-05
MUC4	4585	broad.mit.edu;hgsc.bcm.edu	37	3	195512921	195512921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	195512921	T	C	195512921	3	2	544	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195512921	Missense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10	2861	195512921	2509509	18	31749			1	64		3	3	6820	N	T_GTGACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGC_C	9.539003e-05
CCDC127	133957	hgsc.bcm.edu;ucsc.edu	37	5	205842	205847	+	In_Frame_Del	DEL	TTCTTT	TTCTTT	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	TTCTTT	TTCTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	205847	TTCTTT	-	205842	7	5	544	1	0	1	0	1	0	0	0	0	2765	1609	56	0	433	0	CCDC127	5	205842	In_Frame_Del	DEL	TTCTTT	TCGA-CW-5581-01A-02D-1534-10		205842	180709418	19	31750											
YTHDC2	64848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	112902905	112902905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	112902905	G	T	112902905	3	4	544	1	0	0	0	0	1	0	0	0	17509	1174	41	4	3045	4	YTHDC2	5	112902905	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10	112697063	112902905	68012355	20	31751											
RAPGEF6	51735	broad.mit.edu;ucsc.edu	37	5	130825242	130825242	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	130825242	C	C	130825242	3	2	544	1	0	0	0	0	1	0	0	0	13061	14	1	5	3510	5	RAPGEF6	5	130825242	Missense_Mutation	SNP	A	TCGA-CW-5581-01A-02D-1534-10	17922337	130825242	50090018	21	31752											
PCDH1	5097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141242928	141242928	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	141242928	T	A	141242928	4	1	544	1	0	0	0	0	0	1	0	0	11513	1792	62	5	841	5	PCDH1	5	141242928	Nonsense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10	10417686	141242928	39672332	22	31753											
NHP2	55651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	177576774	177576774	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	177576774	C	G	177576774	3	3	544	1	0	0	0	0	1	0	0	0	10416	564	20	4	63	4	NHP2	5	177576774	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	36333846	177576774	3338486	23	31754											
ERVFRDE1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	11105212	11105212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	11105212	C	A	11105212	3	1	544	1	0	0	0	0	1	0	0	0	5248	855	30	4	1288	4	ERVFRDE1	6	11105212	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10		11105212	160009855	24	31755											
MYLIP	29116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	16146960	16146960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	16146960	T	C	16146960	3	2	544	1	0	0	0	0	1	0	0	0	10062	1609	56	3	1342	3	MYLIP	6	16146960	Missense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10	5041748	16146960	154968107	25	31756											
KIAA0319	9856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	24596226	24596226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	24596226	C	T	24596226	3	4	544	1	0	0	0	0	1	0	0	0	8175	710	25	2	2618	2	KIAA0319	6	24596226	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	8449266	24596226	146518841	26	31757											
ASCC3	10973	hgsc.bcm.edu;ucsc.edu	37	6	101049749	101049749	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	101049749	T	-	101049749	7	5	544	1	0	1	0	1	0	0	0	0	1033	1609	56	0	1404	0	ASCC3	6	101049749	Frame_Shift_Del	DEL	T	TCGA-CW-5581-01A-02D-1534-10	76453523	101049749	70065318	27	31758											
HIVEP2	3097	broad.mit.edu;ucsc.edu	37	6	143081503	143081503	+	Silent	SNP	A	G	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	143081503	G	G	143081503	2	3	544	1	0	0	0	0	0	0	0	1	7194	59	3	3		3	HIVEP2	6	143081503	Silent	SNP	A	TCGA-CW-5581-01A-02D-1534-10	42031754	143081503	28033564	28	31759											
MGAM	8972	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	141752123	141752123	+	Silent	SNP	C	C	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	141752123	C	A	141752123	2	1	544	1	0	0	0	0	0	0	0	1	9548	842	30	4		4	MGAM	7	141752123	Silent	SNP	C	TCGA-CW-5581-01A-02D-1534-10		141752123	17386540	29	31760											
RTKN2	219790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	63958010	63958010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	63958010	T	G	63958010	3	3	544	1	0	0	0	0	1	0	0	0	13736	1435	50	5	346	5	RTKN2	10	63958010	Missense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10		63958010	71576737	30	31761											
JMJD1C	221037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	64968907	64968907	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	64968907	G	C	64968907	3	2	544	1	0	0	0	0	1	0	0	0	7957	1174	41	4	4911	4	JMJD1C	10	64968907	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10	1010897	64968907	70565840	31	31762											
UNC5B	219699	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	73050863	73050863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	73050863	C	T	73050863	3	4	544	1	0	0	0	0	1	0	0	0	17004	739	26	2	1325	2	UNC5B	10	73050863	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	8081956	73050863	62483884	32	31763											
FAS	355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	90762874	90762874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	90762874	C	T	90762874	3	4	544	1	0	0	0	0	1	0	0	0	5688	565	20	2	125	2	FAS	10	90762874	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	17712011	90762874	44771873	33	31764											
PPRC1	23082	broad.mit.edu	37	10	103907139	103907139	+	Silent	SNP	A	C	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	103907139	C	C	103907139	2	2	544	1	0	0	0	0	0	0	0	1	12420	295	11	5		5	PPRC1	10	103907139	Silent	SNP	A	TCGA-CW-5581-01A-02D-1534-10	13144265	103907139	31627608	34	31765											
CYP17A1	1586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	104596868	104596868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	104596868	T	A	104596868	3	1	544	1	0	0	0	0	1	0	0	0	4149	1551	54	5	1307	5	CYP17A1	10	104596868	Missense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10	689729	104596868	30937879	35	31766											
MUC5B	727897	hgsc.bcm.edu	37	11	1272671	1272671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	1272671	T	C	1272671	3	2	544	1	0	0	0	0	1	0	0	0	9986	1406	49	3	14692	3	MUC5B	11	1272671	Missense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10		1272671	133733845	36	31767											
CD82	3732	broad.mit.edu	37	11	44639740	44639740	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	44639740	G	G	44639740	3	3	544	1	0	0	0	0	1	0	0	0	3042	391	14	3	489	3	CD82	11	44639740	Missense_Mutation	SNP	A	TCGA-CW-5581-01A-02D-1534-10	43367069	44639740	90366776	37	31768											
OR5L1	219437	broad.mit.edu;hgsc.bcm.edu	37	11	55579578	55579578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	55579578	G	T	55579578	3	4	544	1	0	0	0	0	1	0	0	0	11177	1290	45	4	638	4	OR5L1	11	55579578	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10	10939838	55579578	79426938	38	31769											
OR5AR1	219493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56432011	56432011	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	56432011	A	T	56432011	3	4	544	1	0	0	0	0	1	0	0	0	11152	217	8	5	852	5	OR5AR1	11	56432011	Missense_Mutation	SNP	A	TCGA-CW-5581-01A-02D-1534-10	852433	56432011	78574505	39	31770											
TAS2R13	50838	hgsc.bcm.edu;ucsc.edu	37	12	11061401	11061401	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	11061401	T	-	11061401	7	5	544	1	0	1	0	1	0	0	0	0	15579	1493	52	0	418	0	TAS2R13	12	11061401	Frame_Shift_Del	DEL	T	TCGA-CW-5581-01A-02D-1534-10		11061401	122790494	40	31771											
KCNH3	23416	hgsc.bcm.edu;ucsc.edu	37	12	49935453	49935453	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	49935453	G	-	49935453	7	5	544	1	0	1	0	1	0	0	0	0	8040	933	33	0	361	0	KCNH3	12	49935453	Frame_Shift_Del	DEL	G	TCGA-CW-5581-01A-02D-1534-10	38874052	49935453	83916442	41	31772											
DENR	8562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123238330	123238330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	123238330	C	G	123238330	3	3	544	1	0	0	0	0	1	0	0	0	4440	623	22	4	84	4	DENR	12	123238330	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	73302877	123238330	10613565	42	31773											
SLITRK6	84189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	86369560	86369560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	86369560	G	T	86369560	3	4	544	1	0	0	0	0	1	0	0	0	14760	1174	41	4	1445	4	SLITRK6	13	86369560	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10		86369560	28800318	43	31774											
DHRS4	10901	broad.mit.edu	37	14	24424420	24424420	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	24424420	T	T	24424420	3	4	544	1	0	0	0	0	1	0	0	0	4494	550	19	1	311	1	DHRS4	14	24424420	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10		24424420	82925120	44	31775											
LRFN5	145581	broad.mit.edu	37	14	42356893	42356893	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	42356893	A	A	42356893	3	1	544	1	0	0	0	0	1	0	0	0	8948	1751	61	5	1067	5	LRFN5	14	42356893	Missense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10	17932473	42356893	64992647	45	31776											
FLRT2	23768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	86089421	86089421	+	Silent	SNP	C	C	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	86089421	C	T	86089421	2	4	544	1	0	0	0	0	0	0	0	1	5946	535	19	1		1	FLRT2	14	86089421	Silent	SNP	C	TCGA-CW-5581-01A-02D-1534-10	43732528	86089421	21260119	46	31777											
AQR	9716	broad.mit.edu;ucsc.edu	37	15	35236588	35236588	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	35236588	G	G	35236588	3	3	544	1	0	0	0	0	1	0	0	0	835	1722	60	5	4205	5	AQR	15	35236588	Missense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10		35236588	67294804	47	31778											
CAPN3	825	hgsc.bcm.edu;ucsc.edu	37	15	42701963	42701963	+	RNA	SNP	C	C	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	42701963	C	G	42701963	1	3	544	0	1	0	0	0	0	0	0	0	2630	638	22	4		4	CAPN3	15	42701963	RNA	SNP	C	TCGA-CW-5581-01A-02D-1534-10	7465375	42701963	59829429	48	31779											
CEP152	22995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49089548	49089548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	49089548	G	T	49089548	3	4	544	1	0	0	0	0	1	0	0	0	3250	1357	47	4	4562	4	CEP152	15	49089548	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10	6387585	49089548	53441844	49	31780											
SLC5A11	115584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	24920266	24920266	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	24920266	T	A	24920266	3	1	544	1	0	0	0	0	1	0	0	0	14676	1493	52	5	1549	5	SLC5A11	16	24920266	Missense_Mutation	SNP	T	TCGA-CW-5581-01A-02D-1534-10		24920266	65434487	50	31781	400	2									
SLC5A11	115584	broad.mit.edu;ucsc.edu	37	16	24920271	24920271	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	24920271	C	C	24920271	3	2	544	1	0	0	0	0	1	0	0	0	14676	1145	40	4	1554	4	SLC5A11	16	24920271	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10	5	24920271	65434482	51	31782	400	2									
PLCG2	5336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	81954855	81954855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	81954855	G	A	81954855	3	1	544	1	0	0	0	0	1	0	0	0	12043	1029	36	2	2366	2	PLCG2	16	81954855	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10	57034584	81954855	8399898	52	31783											
SOCS7	30837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36523827	36523827	+	Silent	SNP	A	A	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	36523827	A	G	36523827	2	3	544	1	0	0	0	0	0	0	0	1	14932	175	7	3		3	SOCS7	17	36523827	Silent	SNP	A	TCGA-CW-5581-01A-02D-1534-10		36523827	44671383	53	31784											
IGFBP4	3487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38610249	38610249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	38610249	C	T	38610249	3	4	544	1	0	0	0	0	1	0	0	0	7588	594	21	2	587	2	IGFBP4	17	38610249	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	2086422	38610249	42584961	54	31785											
MPP2	4355	broad.mit.edu	37	17	41960604	41960604	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	G	41960604	G	G	41960604	3	3	544	1	0	0	0	0	1	0	0	0	9741	796	28	4	1428	4	MPP2	17	41960604	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	3350355	41960604	39234606	55	31786											
STH	246744	broad.mit.edu	37	17	44076968	44076968	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	44076968	C	C	44076968	3	2	544	1	0	0	0	0	1	0	0	0	15293	159	6	5	325	5	STH	17	44076968	Missense_Mutation	SNP	A	TCGA-CW-5581-01A-02D-1534-10	2116364	44076968	37118242	56	31787											
C17orf47	284083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56620394	56620394	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	56620394	A	T	56620394	3	4	544	1	0	0	0	0	1	0	0	0	1860	217	8	5	566	5	C17orf47	17	56620394	Missense_Mutation	SNP	A	TCGA-CW-5581-01A-02D-1534-10	12543426	56620394	24574816	57	31788											
CDH2	1000	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	25532271	25532271	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	25532271	A	T	25532271	4	4	544	1	0	0	0	0	0	1	0	0	3107	372	13	5	157	5	CDH2	18	25532271	Nonsense_Mutation	SNP	A	TCGA-CW-5581-01A-02D-1534-10		25532271	52544977	58	31789											
ZNF555	148254	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2853267	2853267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	A	2853267	G	A	2853267	3	1	544	1	0	0	0	0	1	0	0	0	17998	1116	39	1	1218	1	ZNF555	19	2853267	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10		2853267	56275716	59	31790											
ZNF709	163051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	12574850	12574850	+	Missense_Mutation	SNP	C	C	T	rs183982301	by1000genomes;alternate_allele	TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	12574850	C	T	12574850	3	4	544	1	0	0	0	0	1	0	0	0	18125	536	19	1	43	1	ZNF709	19	12574850	Missense_Mutation	SNP	C	TCGA-CW-5581-01A-02D-1534-10	9721583	12574850	46554133	60	31791											
C21orf56	0	broad.mit.edu;hgsc.bcm.edu	37	21	47588274	47588274	+	Silent	SNP	C	C	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	47588274	C	T	47588274	2	4	544	1	0	0	0	0	0	0	0	1	2129	639	23	1		1	C21orf56	21	47588274	Silent	SNP	C	TCGA-CW-5581-01A-02D-1534-10		47588274	541621	61	31792											
MAP3K15	389840	broad.mit.edu;hgsc.bcm.edu	37	X	19398325	19398325	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	C	19398325	G	C	19398325	3	2	544	1	0	0	0	0	1	0	0	0	9256	932	33	4	1483	4	MAP3K15	23	19398325	Missense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10		19398325	135872235	62	31793											
KDM5C	8242	ucsc.edu	37	X	53222684	53222694	+	Frame_Shift_Del	DEL	TGTGGTTCTCA	TGTGGTTCTCA	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	TGTGGTTCTCA	TGTGGTTCTCA	TGTGGTTCTCA	-	TGTGGTTCTCA	TGTGGTTCTCA	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	53222694	TGTGGTTCTCA	-	53222684	7	5	544	1	0	1	0	1	0	0	0	0	8142	1580	55	0	536	0	KDM5C	23	53222684	Frame_Shift_Del	DEL	TGTGGTTCTCA	TCGA-CW-5581-01A-02D-1534-10	33824359	53222684	102047876	63	31794											
ARMCX5	64860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101857839	101857841	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	-	101857841	CTC	-	101857839	7	5	544	1	0	1	0	1	0	0	0	0	962	565	20	0	772	0	ARMCX5	23	101857839	In_Frame_Del	DEL	CTC	TCGA-CW-5581-01A-02D-1534-10	48635155	101857839	53412721	64	31795											
CAPN6	827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	110494226	110494226	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CW-5581-01A-02D-1534-10	TCGA-CW-5581-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9dd4c01f-e870-4108-95d7-dc7cc03999ef	9e10c397-7f80-4c05-a536-1bb1fce0a198	T	110494226	G	T	110494226	4	4	544	1	0	0	0	0	0	1	0	0	2632	963	34	4	872	4	CAPN6	23	110494226	Nonsense_Mutation	SNP	G	TCGA-CW-5581-01A-02D-1534-10	8636387	110494226	44776334	65	31796											
VHL	7428	hgsc.bcm.edu	37	3	10183734	10183734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CW-5581-01A-02W-1584-10	TCGA-CW-5581-11A-01W-1585-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq	.	.	PacBio RS	f75c2b3b-b7d6-4364-9abc-65a050b69668	adde7384-5684-4442-b53e-77b0aa93be0d	A	10183734	C	A	10183734	4	1	545	1	0	0	0	0	0	1	0	0	17174	893	31	4	205	4	VHL	3	10183734	Nonsense_Mutation	SNP	C	TCGA-CW-5581-01A-02W-1584-10		10183734	187838696	1	31797											
EPHA10	284656	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	38186483	38186483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	38186483	C	T	38186483	3	4	546	1	0	0	0	0	1	0	0	0	5168	797	28	2	870	2	EPHA10	1	38186483	Missense_Mutation	SNP	C	TCGA-CW-5583-01A-02D-1534-10		38186483	211064138	1	31798											
IGSF3	3321	hgsc.bcm.edu	37	1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T	rs76151115	bycluster;byfrequency	TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	117142613	C	T	117142613	3	4	546	1	0	0	0	0	1	0	0	0	7608	884	31	1	1625	1	IGSF3	1	117142613	Missense_Mutation	SNP	C	TCGA-CW-5583-01A-02D-1534-10	78956130	117142613	132108008	2	31799											
CTSS	1520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150724283	150724283	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	G	150724283	C	G	150724283	3	3	546	1	0	0	0	0	1	0	0	0	4043	913	32	4	410	4	CTSS	1	150724283	Missense_Mutation	SNP	C	TCGA-CW-5583-01A-02D-1534-10	33581670	150724283	98526338	3	31800											
IFI16	3428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158988366	158988366	+	Silent	SNP	G	G	A	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	A	158988366	G	A	158988366	2	1	546	1	0	0	0	0	0	0	0	1	7518	991	35	2		2	IFI16	1	158988366	Silent	SNP	G	TCGA-CW-5583-01A-02D-1534-10	8264083	158988366	90262255	4	31801											
SELL	6402	hgsc.bcm.edu;ucsc.edu	37	1	169665718	169665718	+	RNA	SNP	G	G	A	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	A	169665718	G	A	169665718	1	1	546	0	1	0	0	0	0	0	0	0	14029	1015	35	2		2	SELL	1	169665718	RNA	SNP	G	TCGA-CW-5583-01A-02D-1534-10	10677352	169665718	79584903	5	31802											
PTGS2	5743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186643675	186643675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	C	186643675	A	C	186643675	3	2	546	1	0	0	0	0	1	0	0	0	12767	14	1	5	193	5	PTGS2	1	186643675	Missense_Mutation	SNP	A	TCGA-CW-5583-01A-02D-1534-10	16977957	186643675	62606946	6	31803											
TP53BP2	7159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223983853	223983853	+	Silent	SNP	T	T	A	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	A	223983853	T	A	223983853	2	1	546	1	0	0	0	0	0	0	0	1	16396	1451	51	5		5	TP53BP2	1	223983853	Silent	SNP	T	TCGA-CW-5583-01A-02D-1534-10	37340178	223983853	25266768	7	31804											
BMPR2	659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	203420922	203420922	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	203420922	A	T	203420922	3	4	546	1	0	0	0	0	1	0	0	0	1471	246	9	5	2580	5	BMPR2	2	203420922	Missense_Mutation	SNP	A	TCGA-CW-5583-01A-02D-1534-10		203420922	39778451	8	31805	401	2									
BMPR2	659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	203420924	203420924	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	203420924	A	T	203420924	3	4	546	1	0	0	0	0	1	0	0	0	1471	101	4	5	2582	5	BMPR2	2	203420924	Missense_Mutation	SNP	A	TCGA-CW-5583-01A-02D-1534-10	2	203420924	39778449	9	31806	401	2									
PTPRN	5798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220159737	220159737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	220159737	C	T	220159737	3	4	546	1	0	0	0	0	1	0	0	0	12820	623	22	2	324	2	PTPRN	2	220159737	Missense_Mutation	SNP	C	TCGA-CW-5583-01A-02D-1534-10	16738813	220159737	23039636	10	31807											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191569	10191569	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	-	10191569	C	-	10191569	7	5	546	1	0	1	0	1	0	0	0	0	17174	912	32	0	572	0	VHL	3	10191569	Frame_Shift_Del	DEL	C	TCGA-CW-5583-01A-02D-1534-10		10191569	187830861	11	31808											
C4orf39	0	hgsc.bcm.edu;ucsc.edu	37	4	165878425	165878426	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	-	165878426	TC	-	165878425	7	5	546	1	0	1	0	1	0	0	0	0	2270	1783	62	0	253	0	C4orf39	4	165878425	Frame_Shift_Del	DEL	TC	TCGA-CW-5583-01A-02D-1534-10		165878425	25275851	12	31809											
ISL1	3670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	50685635	50685635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	C	50685635	G	C	50685635	3	2	546	1	0	0	0	0	1	0	0	0	7863	1175	41	4	648	4	ISL1	5	50685635	Missense_Mutation	SNP	G	TCGA-CW-5583-01A-02D-1534-10		50685635	130229625	13	31810											
RGMB	285704	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	98115300	98115300	+	Silent	SNP	A	A	T	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	98115300	A	T	98115300	2	4	546	1	0	0	0	0	0	0	0	1	13294	175	7	5		5	RGMB	5	98115300	Silent	SNP	A	TCGA-CW-5583-01A-02D-1534-10	47429665	98115300	82799960	14	31811											
ATF6B	1388	hgsc.bcm.edu	37	6	32088654	32088655	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	G	32088655	-	G	32088654	7	5	546	1	0	1	1	0	0	0	0	0	1085	755	27	0	1429	0	ATF6B	6	32088654	Frame_Shift_Ins	INS	-	TCGA-CW-5583-01A-02D-1534-10		32088654	139026413	15	31812											
EGFL8	80864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	32134517	32134517	+	Silent	SNP	G	G	A	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	A	32134517	G	A	32134517	2	1	546	1	0	0	0	0	0	0	0	1	4967	991	35	2		2	EGFL8	6	32134517	Silent	SNP	G	TCGA-CW-5583-01A-02D-1534-10	45863	32134517	138980550	16	31813											
MRPL14	64928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44084332	44084332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	44084332	C	T	44084332	3	4	546	1	0	0	0	0	1	0	0	0	9786	623	22	2	428	2	MRPL14	6	44084332	Missense_Mutation	SNP	C	TCGA-CW-5583-01A-02D-1534-10	11949815	44084332	127030735	17	31814											
LRP11	84918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	150174142	150174142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	A	150174142	C	A	150174142	3	1	546	1	0	0	0	0	1	0	0	0	8960	826	29	4	758	4	LRP11	6	150174142	Missense_Mutation	SNP	C	TCGA-CW-5583-01A-02D-1534-10	106089810	150174142	20940925	18	31815											
PON3	5446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94993300	94993300	+	Silent	SNP	C	C	A	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	A	94993300	C	A	94993300	2	1	546	1	0	0	0	0	0	0	0	1	12257	465	17	4		4	PON3	7	94993300	Silent	SNP	C	TCGA-CW-5583-01A-02D-1534-10		94993300	64145363	19	31816											
UBE3C	9690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	156974262	156974262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	G	156974262	A	G	156974262	3	3	546	1	0	0	0	0	1	0	0	0	16893	449	16	3	693	3	UBE3C	7	156974262	Missense_Mutation	SNP	A	TCGA-CW-5583-01A-02D-1534-10	61980962	156974262	2164401	20	31817											
KIAA1598	57698	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	118719667	118719667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	118719667	C	T	118719667	3	4	546	1	0	0	0	0	1	0	0	0	8253	710	25	2	1704	2	KIAA1598	10	118719667	Missense_Mutation	SNP	C	TCGA-CW-5583-01A-02D-1534-10		118719667	16815080	21	31818											
USP15	9958	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	62790158	62790158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	C	62790158	G	C	62790158	3	2	546	1	0	0	0	0	1	0	0	0	17058	1174	41	4	2641	4	USP15	12	62790158	Missense_Mutation	SNP	G	TCGA-CW-5583-01A-02D-1534-10		62790158	71061737	22	31819											
AHNAK2	113146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	105418731	105418731	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	-	105418731	G	-	105418731	7	5	546	1	0	1	0	1	0	0	0	0	415	987	35	0	14334	0	AHNAK2	14	105418731	Frame_Shift_Del	DEL	G	TCGA-CW-5583-01A-02D-1534-10		105418731	1930809	23	31820											
LRRK1	79705	broad.mit.edu;hgsc.bcm.edu	37	15	101606305	101606305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	101606305	C	T	101606305	3	4	546	1	0	0	0	0	1	0	0	0	9039	855	30	2	5785	2	LRRK1	15	101606305	Missense_Mutation	SNP	C	TCGA-CW-5583-01A-02D-1534-10		101606305	925087	24	31821											
TRAP1	10131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3726076	3726076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	G	3726076	A	G	3726076	3	3	546	1	0	0	0	0	1	0	0	0	16467	333	12	3	1387	3	TRAP1	16	3726076	Missense_Mutation	SNP	A	TCGA-CW-5583-01A-02D-1534-10		3726076	86628677	25	31822											
TMCO7	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68953056	68953056	+	Silent	SNP	C	C	A	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	A	68953056	C	A	68953056	2	1	546	1	0	0	0	0	0	0	0	1	16013	639	23	4		4	TMCO7	16	68953056	Silent	SNP	C	TCGA-CW-5583-01A-02D-1534-10	65226980	68953056	21401697	26	31823											
MYH3	4621	hgsc.bcm.edu;ucsc.edu	37	17	10537344	10537344	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	-	10537344	C	-	10537344	7	5	546	1	0	1	0	1	0	0	0	0	10043	912	32	0	1350	0	MYH3	17	10537344	Frame_Shift_Del	DEL	C	TCGA-CW-5583-01A-02D-1534-10		10537344	70657866	27	31824	402	2									
MYH3	4621	hgsc.bcm.edu;ucsc.edu	37	17	10537346	10537347	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	-	10537347	TA	-	10537346	7	5	546	1	0	1	0	1	0	0	0	0	10043	1763	61	0	1352	0	MYH3	17	10537346	Frame_Shift_Del	DEL	TA	TCGA-CW-5583-01A-02D-1534-10	2	10537346	70657864	28	31825	402	2									
OSBPL1A	114876	hgsc.bcm.edu;ucsc.edu	37	18	21898718	21898721	+	Frame_Shift_Del	DEL	ACCA	ACCA	-	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	ACCA	ACCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	-	21898721	ACCA	-	21898718	7	5	546	1	0	1	0	1	0	0	0	0	11284	378	14	0	2255	0	OSBPL1A	18	21898718	Frame_Shift_Del	DEL	ACCA	TCGA-CW-5583-01A-02D-1534-10		21898718	56178530	29	31826											
ZNF653	115950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11598181	11598181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	A	11598181	G	A	11598181	3	1	546	1	0	0	0	0	1	0	0	0	18078	1261	44	2	774	2	ZNF653	19	11598181	Missense_Mutation	SNP	G	TCGA-CW-5583-01A-02D-1534-10		11598181	47530802	30	31827											
NOTCH3	4854	broad.mit.edu;hgsc.bcm.edu	37	19	15290202	15290202	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	C	15290202	G	C	15290202	3	2	546	1	0	0	0	0	1	0	0	0	10557	942	33	4	3584	4	NOTCH3	19	15290202	Missense_Mutation	SNP	G	TCGA-CW-5583-01A-02D-1534-10	3692021	15290202	43838781	31	31828											
GIPR	2696	broad.mit.edu	37	19	46185190	46185190	+	Silent	SNP	C	T	T	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	T	46185190	T	T	46185190	2	4	546	1	0	0	0	0	0	0	0	1	6402	805	28	2		2	GIPR	19	46185190	Silent	SNP	C	TCGA-CW-5583-01A-02D-1534-10	30894988	46185190	12943793	32	31829											
MOCS3	27304	broad.mit.edu	37	20	49575435	49575435	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	-	49575435	-	-	49575435	7	5	546	1	0	1	0	1	0	0	0	0	9699	304	11	0	58	0	MOCS3	20	49575435	Frame_Shift_Del	DEL	A	TCGA-CW-5583-01A-02D-1534-10		49575435	13450085	33	31830											
MORC2	22880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	31328363	31328363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	C	31328363	G	C	31328363	3	2	546	1	0	0	0	0	1	0	0	0	9709	962	34	4	286	4	MORC2	22	31328363	Missense_Mutation	SNP	G	TCGA-CW-5583-01A-02D-1534-10		31328363	19976203	34	31831											
VCX	26609	hgsc.bcm.edu	37	X	7811830	7811859	+	In_Frame_Del	DEL	GAACCACTGAGTCAGGAGAGCGAGGTGGAA	GAACCACTGAGTCAGGAGAGCGAGGTGGAA	-	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	GAACCACTGAGTCAGGAGAGCGAGGTGGAA	GAACCACTGAGTCAGGAGAGCGAGGTGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	-	7811859	GAACCACTGAGTCAGGAGAGCGAGGTGGAA	-	7811830	7	5	546	1	0	1	0	1	0	0	0	0	17154	1175	41	0	400	0	VCX	23	7811830	In_Frame_Del	DEL	GAACCACTGAGTCAGGAGAGCGAGGTGGAA	TCGA-CW-5583-01A-02D-1534-10		7811830	147458730	35	31832											
TFDP3	51270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	132351243	132351243	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-5583-01A-02D-1534-10	TCGA-CW-5583-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2cb6b578-8543-4a12-8331-1721ddc47303	1e656287-a1d9-4273-bbd2-c4909d29366d	G	132351243	T	G	132351243	3	3	546	1	0	0	0	0	1	0	0	0	15811	1754	61	5	176	5	TFDP3	23	132351243	Missense_Mutation	SNP	T	TCGA-CW-5583-01A-02D-1534-10	124539413	132351243	22919317	36	31833											
UBXN11	91544	broad.mit.edu;ucsc.edu	37	1	26609138	26609138	+	Splice_Site	SNP	A	C	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	26609138	C	C	26609138	5	2	547	1	0	0	0	0	0	0	1	0	16925	173	6	5	276	5	UBXN11	1	26609138	Splice_Site	SNP	A	TCGA-CW-5585-01A-01D-1534-10		26609138	222641483	1	31834											
WARS2	10352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	119575670	119575670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	119575670	G	C	119575670	3	2	547	1	0	0	0	0	1	0	0	0	17262	1348	47	4	139	4	WARS2	1	119575670	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10	92966532	119575670	129674951	2	31835											
THBS3	7059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155169611	155169612	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	-	155169612	CA	-	155169611	7	5	547	1	0	1	0	1	0	0	0	0	15867	826	29	0	1038	0	THBS3	1	155169611	Frame_Shift_Del	DEL	CA	TCGA-CW-5585-01A-01D-1534-10	35593941	155169611	94081010	3	31836											
USP34	9736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61575328	61575328	+	Silent	SNP	G	G	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	61575328	G	A	61575328	2	1	547	1	0	0	0	0	0	0	0	1	17077	1195	42	2		2	USP34	2	61575328	Silent	SNP	G	TCGA-CW-5585-01A-01D-1534-10		61575328	181624045	4	31837											
AFF3	3899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	100623119	100623119	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	-	100623119	T	-	100623119	7	5	547	1	0	1	0	1	0	0	0	0	358	1609	56	0	2908	0	AFF3	2	100623119	Frame_Shift_Del	DEL	T	TCGA-CW-5585-01A-01D-1534-10	39047791	100623119	142576254	5	31838											
RBM43	375287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	152107578	152107581	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	TCTC	TCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	-	152107581	TCTC	-	152107578	7	5	547	1	0	1	0	1	0	0	0	0	13150	1792	62	0	161	0	RBM43	2	152107578	Frame_Shift_Del	DEL	TCTC	TCGA-CW-5585-01A-01D-1534-10	51484459	152107578	91091795	6	31839											
SCN3A	6328	broad.mit.edu;ucsc.edu	37	2	165946947	165946947	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	165946947	C	C	165946947	3	2	547	1	0	0	0	0	1	0	0	0	13931	1406	49	3	290	3	SCN3A	2	165946947	Missense_Mutation	SNP	T	TCGA-CW-5585-01A-01D-1534-10	13839369	165946947	77252426	7	31840											
OSBPL6	114880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179255817	179255817	+	Silent	SNP	T	T	G	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	G	179255817	T	G	179255817	2	3	547	1	0	0	0	0	0	0	0	1	11288	1509	53	5		5	OSBPL6	2	179255817	Silent	SNP	T	TCGA-CW-5585-01A-01D-1534-10	13308870	179255817	63943556	8	31841											
ABCA12	26154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	215839587	215839587	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	215839587	T	A	215839587	3	1	547	1	0	0	0	0	1	0	0	0	30	1768	61	5	2480	5	ABCA12	2	215839587	Missense_Mutation	SNP	T	TCGA-CW-5585-01A-01D-1534-10	36583770	215839587	27359786	9	31842											
APPL1	26060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	57291081	57291081	+	Splice_Site	SNP	T	T	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	57291081	T	A	57291081	5	1	547	1	0	0	0	0	0	0	1	0	817	1652	57	5	1303	5	APPL1	3	57291081	Splice_Site	SNP	T	TCGA-CW-5585-01A-01D-1534-10		57291081	140731349	10	31843											
UBA5	79876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	132389115	132389115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	G	132389115	A	G	132389115	3	3	547	1	0	0	0	0	1	0	0	0	16842	217	8	3	499	3	UBA5	3	132389115	Missense_Mutation	SNP	A	TCGA-CW-5585-01A-01D-1534-10	75098034	132389115	65633315	11	31844											
CPB1	1360	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	148559631	148559631	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	T	148559631	A	T	148559631	4	4	547	1	0	0	0	0	0	1	0	0	3798	363	13	5	518	5	CPB1	3	148559631	Nonsense_Mutation	SNP	A	TCGA-CW-5585-01A-01D-1534-10	16170516	148559631	49462799	12	31845											
KLHL24	54800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	183390233	183390233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	183390233	A	C	183390233	3	2	547	1	0	0	0	0	1	0	0	0	8386	69	3	5	1581	5	KLHL24	3	183390233	Missense_Mutation	SNP	A	TCGA-CW-5585-01A-01D-1534-10	34830602	183390233	14632197	13	31846											
MUC4	4585	broad.mit.edu	37	3	195509322	195509322	+	Silent	SNP	G	A	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	195509322	A	A	195509322	2	1	547	1	0	0	0	0	0	0	0	1	9985	1277	45	2		2	MUC4	3	195509322	Silent	SNP	G	TCGA-CW-5585-01A-01D-1534-10	12119089	195509322	2513108	14	31847											
PDGFRA	5156	broad.mit.edu	37	4	55156677	55156677	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	55156677	A	A	55156677	3	1	547	1	0	0	0	0	1	0	0	0	11668	506	18	4	3160	4	PDGFRA	4	55156677	Missense_Mutation	SNP	C	TCGA-CW-5585-01A-01D-1534-10		55156677	135997599	15	31848											
POLR2B	5431	broad.mit.edu;ucsc.edu	37	4	57887152	57887152	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	57887152	A	A	57887152	3	1	547	1	0	0	0	0	1	0	0	0	12222	1203	42	2	2477	2	POLR2B	4	57887152	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10	2730475	57887152	133267124	16	31849											
DDIT4L	115265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	101108875	101108875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	101108875	G	C	101108875	3	2	547	1	0	0	0	0	1	0	0	0	4334	1029	36	4	44	4	DDIT4L	4	101108875	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10	43221723	101108875	90045401	17	31850											
VCAN	1462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	82834255	82834255	+	Silent	SNP	T	T	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	82834255	T	C	82834255	2	2	547	1	0	0	0	0	0	0	0	1	17150	1635	57	3		3	VCAN	5	82834255	Silent	SNP	T	TCGA-CW-5585-01A-01D-1534-10		82834255	98081005	18	31851											
PRPS1L1	221823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	18066846	18066846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	G	18066846	A	G	18066846	3	3	547	1	0	0	0	0	1	0	0	0	12589	159	6	3	400	3	PRPS1L1	7	18066846	Missense_Mutation	SNP	A	TCGA-CW-5585-01A-01D-1534-10		18066846	141071817	19	31852											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	48312610	48312610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	G	48312610	A	G	48312610	3	3	547	1	0	0	0	0	1	0	0	0	31	304	11	3	3242	3	ABCA13	7	48312610	Missense_Mutation	SNP	A	TCGA-CW-5585-01A-01D-1534-10	30245764	48312610	110826053	20	31853											
PRUNE2	158471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	79318764	79318764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	79318764	T	C	79318764	3	2	547	1	0	0	0	0	1	0	0	0	12651	1725	60	3	1545	3	PRUNE2	9	79318764	Missense_Mutation	SNP	T	TCGA-CW-5585-01A-01D-1534-10		79318764	61894667	21	31854											
SVEP1	79987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	113169878	113169878	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	113169878	G	C	113169878	3	2	547	1	0	0	0	0	1	0	0	0	15432	1174	41	4	2757	4	SVEP1	9	113169878	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10	33851114	113169878	28043553	22	31855											
KIAA0368	23392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	114132845	114132845	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	T	114132845	A	T	114132845	3	4	547	1	0	0	0	0	1	0	0	0	8178	188	7	5	699	5	KIAA0368	9	114132845	Missense_Mutation	SNP	A	TCGA-CW-5585-01A-01D-1534-10	962967	114132845	27080586	23	31856											
ODF2	4957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131256871	131256871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	G	131256871	A	G	131256871	3	3	547	1	0	0	0	0	1	0	0	0	10834	304	11	3	1952	3	ODF2	9	131256871	Missense_Mutation	SNP	A	TCGA-CW-5585-01A-01D-1534-10	17124026	131256871	9956560	24	31857											
PDSS1	23590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	26994248	26994248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	26994248	C	A	26994248	3	1	547	1	0	0	0	0	1	0	0	0	11700	477	17	4	275	4	PDSS1	10	26994248	Missense_Mutation	SNP	C	TCGA-CW-5585-01A-01D-1534-10		26994248	108540499	25	31858											
DCHS1	8642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	6652328	6652328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	T	6652328	G	T	6652328	3	4	547	1	0	0	0	0	1	0	0	0	4289	1357	47	4	6062	4	DCHS1	11	6652328	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10		6652328	128354188	26	31859											
FADS2	9415	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61624985	61624985	+	Missense_Mutation	SNP	G	G	A	rs140356378		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	61624985	G	A	61624985	3	1	547	1	0	0	0	0	1	0	0	0	5370	1145	40	1	891	1	FADS2	11	61624985	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10	54972657	61624985	73381531	27	31860											
OMP	4975	broad.mit.edu	37	11	76814080	76814080	+	Silent	SNP	C	T	T	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	T	76814080	T	T	76814080	2	4	547	1	0	0	0	0	0	0	0	1	10874	883	31	1		1	OMP	11	76814080	Silent	SNP	C	TCGA-CW-5585-01A-01D-1534-10	15189095	76814080	58192436	28	31861											
TPI1	7167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6978057	6978057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	G	6978057	A	G	6978057	3	3	547	1	0	0	0	0	1	0	0	0	16415	449	16	3	262	3	TPI1	12	6978057	Missense_Mutation	SNP	A	TCGA-CW-5585-01A-01D-1534-10		6978057	126873838	29	31862											
NXPH4	11247	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57619419	57619419	+	Silent	SNP	G	G	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	57619419	G	A	57619419	2	1	547	1	0	0	0	0	0	0	0	1	10800	962	34	2		2	NXPH4	12	57619419	Silent	SNP	G	TCGA-CW-5585-01A-01D-1534-10	50641362	57619419	76232476	30	31863											
CEP290	80184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	88514013	88514013	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	-	88514013	T	-	88514013	7	5	547	1	0	1	0	1	0	0	0	0	3255	1493	52	0	6199	0	CEP290	12	88514013	Frame_Shift_Del	DEL	T	TCGA-CW-5585-01A-01D-1534-10	30894594	88514013	45337882	31	31864											
COL4A2	1284	broad.mit.edu	37	13	111125466	111125466	+	Silent	SNP	T	A	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	111125466	A	A	111125466	2	1	547	1	0	0	0	0	0	0	0	1	3692	1770	62	5		5	COL4A2	13	111125466	Silent	SNP	T	TCGA-CW-5585-01A-01D-1534-10		111125466	4044412	32	31865											
ARHGEF7	8874	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	111953859	111953859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	111953859	G	A	111953859	3	1	547	1	0	0	0	0	1	0	0	0	911	1291	45	2	2633	2	ARHGEF7	13	111953859	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10	828393	111953859	3216019	33	31866											
SOCS4	122809	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55510990	55510991	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	T	55510991	-	T	55510990	7	5	547	1	0	1	1	0	0	0	0	0	14929	101	4	0	1233	0	SOCS4	14	55510990	Frame_Shift_Ins	INS	-	TCGA-CW-5585-01A-01D-1534-10		55510990	51838550	34	31867											
SLC28A2	9153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45559654	45559654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	T	45559654	C	T	45559654	3	4	547	1	0	0	0	0	1	0	0	0	14545	492	17	2	982	2	SLC28A2	15	45559654	Missense_Mutation	SNP	C	TCGA-CW-5585-01A-01D-1534-10		45559654	56971738	35	31868											
TRPM7	54822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	50891477	50891477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	50891477	T	C	50891477	3	2	547	1	0	0	0	0	1	0	0	0	16603	1638	57	3	2664	3	TRPM7	15	50891477	Missense_Mutation	SNP	T	TCGA-CW-5585-01A-01D-1534-10	5331823	50891477	51639915	36	31869											
FAM63B	54629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59146745	59146745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	59146745	G	A	59146745	3	1	547	1	0	0	0	0	1	0	0	0	5604	1116	39	1	1836	1	FAM63B	15	59146745	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10	8255268	59146745	43384647	37	31870											
BRD7	29117	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	50357601	50357601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	50357601	T	C	50357601	3	2	547	1	0	0	0	0	1	0	0	0	1507	1551	54	3	642	3	BRD7	16	50357601	Missense_Mutation	SNP	T	TCGA-CW-5585-01A-01D-1534-10		50357601	39997152	38	31871											
TAF1C	9013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	84215642	84215642	+	Silent	SNP	G	G	T	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	T	84215642	G	T	84215642	2	4	547	1	0	0	0	0	0	0	0	1	15533	1219	43	4		4	TAF1C	16	84215642	Silent	SNP	G	TCGA-CW-5585-01A-01D-1534-10	33858041	84215642	6139111	39	31872											
GEMIN4	50628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	649388	649388	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	T	649388	A	T	649388	3	4	547	1	0	0	0	0	1	0	0	0	6337	217	8	5	1285	5	GEMIN4	17	649388	Missense_Mutation	SNP	A	TCGA-CW-5585-01A-01D-1534-10		649388	80545822	40	31873											
FBN3	84467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8196481	8196481	+	Silent	SNP	G	G	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	8196481	G	A	8196481	2	1	547	1	0	0	0	0	0	0	0	1	5711	1136	40	1		1	FBN3	19	8196481	Silent	SNP	G	TCGA-CW-5585-01A-01D-1534-10		8196481	50932502	41	31874											
LASS4	0	hgsc.bcm.edu;ucsc.edu	37	19	8322788	8322790	+	In_Frame_Del	DEL	AGT	AGT	-	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	AGT	AGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	-	8322790	AGT	-	8322788	7	5	547	1	0	1	0	1	0	0	0	0	8648	188	7	0	797	0	LASS4	19	8322788	In_Frame_Del	DEL	AGT	TCGA-CW-5585-01A-01D-1534-10	126307	8322788	50806195	42	31875											
RTN2	6253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45997582	45997582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	45997582	G	A	45997582	3	1	547	1	0	0	0	0	1	0	0	0	13739	1116	39	1	1013	1	RTN2	19	45997582	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10	37674794	45997582	13131401	43	31876											
SLC27A5	10998	broad.mit.edu;hgsc.bcm.edu	37	19	59011001	59011001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	59011001	G	A	59011001	3	1	547	1	0	0	0	0	1	0	0	0	14542	1116	39	1	563	1	SLC27A5	19	59011001	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10	13013419	59011001	117982	44	31877											
SLC12A5	57468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44663593	44663593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	44663593	G	A	44663593	3	1	547	1	0	0	0	0	1	0	0	0	14399	1203	42	2	190	2	SLC12A5	20	44663593	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10		44663593	18361927	45	31878											
ZNF512B	57473	broad.mit.edu	37	20	62595905	62595905	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	C	62595905	C	C	62595905	3	2	547	1	0	0	0	0	1	0	0	0	17969	1551	54	3	1527	3	ZNF512B	20	62595905	Missense_Mutation	SNP	T	TCGA-CW-5585-01A-01D-1534-10	17932312	62595905	429615	46	31879											
UMODL1	89766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	43533907	43533907	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	T	43533907	G	T	43533907	4	4	547	1	0	0	0	0	0	1	0	0	16992	943	33	4	2759	4	UMODL1	21	43533907	Nonsense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10		43533907	4595988	47	31880											
MAGEE2	139599	broad.mit.edu;hgsc.bcm.edu	37	X	75003527	75003527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5585-01A-01D-1534-10	TCGA-CW-5585-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd6d9aa8-d0ef-4810-a43c-eacdd846c44e	f3f5f3ab-e4d6-418a-aca2-feff7f19abd2	A	75003527	G	A	75003527	3	1	547	1	0	0	0	0	1	0	0	0	9193	1203	42	2	215	2	MAGEE2	23	75003527	Missense_Mutation	SNP	G	TCGA-CW-5585-01A-01D-1534-10		75003527	80267033	48	31881											
EIF4G3	8672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	21167484	21167484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	21167484	C	A	21167484	3	1	548	1	0	0	0	0	1	0	0	0	5040	739	26	4	1031	4	EIF4G3	1	21167484	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10		21167484	228083137	1	31882											
RIMS3	9783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	41092246	41092246	+	Silent	SNP	G	G	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	41092246	G	T	41092246	2	4	548	1	0	0	0	0	0	0	0	1	13382	1277	45	4		4	RIMS3	1	41092246	Silent	SNP	G	TCGA-CW-5588-01A-01D-1534-10	19924762	41092246	208158375	2	31883											
CYP4B1	1580	hgsc.bcm.edu;ucsc.edu	37	1	47282767	47282767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	47282767	G	A	47282767	3	1	548	1	0	0	0	0	1	0	0	0	4187	971	34	2	1155	2	CYP4B1	1	47282767	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10	6190521	47282767	201967854	3	31884											
ADAR	103	broad.mit.edu;hgsc.bcm.edu	37	1	154569310	154569310	+	Silent	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	154569310	G	A	154569310	2	1	548	1	0	0	0	0	0	0	0	1	281	1045	37	1		1	ADAR	1	154569310	Silent	SNP	G	TCGA-CW-5588-01A-01D-1534-10	107286543	154569310	94681311	4	31885											
FLAD1	80308	broad.mit.edu;ucsc.edu	37	1	154956241	154956241	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	154956241	A	A	154956241	4	1	548	1	0	0	0	0	0	1	0	0	5927	1764	61	5	73	5	FLAD1	1	154956241	Nonsense_Mutation	SNP	T	TCGA-CW-5588-01A-01D-1534-10	386931	154956241	94294380	5	31886											
GPR37L1	9283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	202092521	202092521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	202092521	G	T	202092521	3	4	548	1	0	0	0	0	1	0	0	0	6699	1232	43	4	432	4	GPR37L1	1	202092521	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10	47136280	202092521	47158100	6	31887											
OR2T12	127064	broad.mit.edu;hgsc.bcm.edu	37	1	248458390	248458390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	248458390	A	G	248458390	3	3	548	1	0	0	0	0	1	0	0	0	11026	246	9	3	474	3	OR2T12	1	248458390	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10	46365869	248458390	792231	7	31888											
OR2T4	127074	hgsc.bcm.edu	37	1	248525328	248525329	+	Frame_Shift_Ins	INS	-	-	TA	rs61248663	bycluster;by1000genomes	TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	TA	248525329	-	TA	248525328	7	5	548	1	0	1	1	0	0	0	0	0	11034	507	18	0	448	0	OR2T4	1	248525328	Frame_Shift_Ins	INS	-	TCGA-CW-5588-01A-01D-1534-10	66938	248525328	725293	8	31889											
ASXL2	55252	hgsc.bcm.edu;ucsc.edu	37	2	26068366	26068368	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	-	26068368	CTT	-	26068366	7	5	548	1	0	1	0	1	0	0	0	0	1067	690	24	0	4227	0	ASXL2	2	26068366	In_Frame_Del	DEL	CTT	TCGA-CW-5588-01A-01D-1534-10		26068366	217131007	9	31890											
ANKRD36	375248	broad.mit.edu;hgsc.bcm.edu	37	2	97849372	97849372	+	Silent	SNP	T	T	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	97849372	T	C	97849372	2	2	548	1	0	0	0	0	0	0	0	1	665	1683	59	3		3	ANKRD36	2	97849372	Silent	SNP	T	TCGA-CW-5588-01A-01D-1534-10	71781006	97849372	145350001	10	31891											
XIRP2	129446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	168103910	168103910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	168103910	A	T	168103910	3	4	548	1	0	0	0	0	1	0	0	0	17442	14	1	5	6038	5	XIRP2	2	168103910	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10	70254538	168103910	75095463	11	31892											
HOXD3	3232	broad.mit.edu	37	2	177033982	177033982	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	177033982	C	C	177033982	3	2	548	1	0	0	0	0	1	0	0	0	7330	159	6	5	142	5	HOXD3	2	177033982	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10	8930072	177033982	66165391	12	31893											
HECW2	57520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	197194348	197194348	+	Silent	SNP	A	A	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	197194348	A	T	197194348	2	4	548	1	0	0	0	0	0	0	0	1	7050	146	6	5		5	HECW2	2	197194348	Silent	SNP	A	TCGA-CW-5588-01A-01D-1534-10	20160366	197194348	46005025	13	31894											
ALPPL2	251	hgsc.bcm.edu	37	2	233273011	233273011	+	Missense_Mutation	SNP	C	C	G	rs75920311	bycluster;byfrequency	TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	233273011	C	G	233273011	3	3	548	1	0	0	0	0	1	0	0	0	549	623	22	4	705	4	ALPPL2	2	233273011	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10	36078663	233273011	9926362	14	31895											
PRR21	643905	hgsc.bcm.edu	37	2	240982052	240982052	+	Silent	SNP	C	C	G	rs77588089	bycluster	TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	240982052	C	G	240982052	2	3	548	1	0	0	0	0	0	0	0	1	12602	523	19	4		4	PRR21	2	240982052	Silent	SNP	C	TCGA-CW-5588-01A-01D-1534-10	7709041	240982052	2217321	15	31896											
ITPR1	3708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	4669521	4669521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	4669521	G	A	4669521	3	1	548	1	0	0	0	0	1	0	0	0	7927	1203	42	2	248	2	ITPR1	3	4669521	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10		4669521	193352909	16	31897											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191492	10191492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	10191492	G	A	10191492	3	1	548	1	0	0	0	0	1	0	0	0	17174	1319	46	2	495	2	VHL	3	10191492	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10	5521971	10191492	187830938	17	31898											
CEP70	80321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	138216885	138216885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	138216885	G	A	138216885	3	1	548	1	0	0	0	0	1	0	0	0	3261	1029	36	2	81	2	CEP70	3	138216885	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10	128025393	138216885	59805545	18	31899											
MUC4	4585	broad.mit.edu	37	3	195506099	195506099	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	195506099	C	C	195506099	3	2	548	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195506099	Missense_Mutation	SNP	T	TCGA-CW-5588-01A-01D-1534-10	57289214	195506099	2516331	19	31900											
MUC4	4585	hgsc.bcm.edu	37	3	195512302	195512302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	195512302	G	A	195512302	3	1	548	1	0	0	0	0	1	0	0	0	9985	1000	35	2		2	MUC4	3	195512302	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10	6203	195512302	2510128	20	31901											
FAM193A	8603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	2733519	2733519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	2733519	C	T	2733519	3	4	548	1	0	0	0	0	1	0	0	0	5528	797	28	2	3665	2	FAM193A	4	2733519	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10		2733519	188420757	21	31902											
C4orf21	55345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	113468532	113468532	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	113468532	T	A	113468532	3	1	548	1	0	0	0	0	1	0	0	0	2256	1435	50	5	827	5	C4orf21	4	113468532	Missense_Mutation	SNP	T	TCGA-CW-5588-01A-01D-1534-10	110735013	113468532	77685744	22	31903											
CCRN4L	25819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	139966122	139966122	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	139966122	C	G	139966122	3	3	548	1	0	0	0	0	1	0	0	0	2953	595	21	4	800	4	CCRN4L	4	139966122	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10	26497590	139966122	51188154	23	31904											
GALNT7	51809	hgsc.bcm.edu;ucsc.edu	37	4	174090012	174090013	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	AA	174090013	-	AA	174090012	7	5	548	1	0	1	1	0	0	0	0	0	6225	1764	61	0	28	0	GALNT7	4	174090012	Frame_Shift_Ins	INS	-	TCGA-CW-5588-01A-01D-1534-10	34123890	174090012	17064264	24	31905											
DHX29	54505	broad.mit.edu;hgsc.bcm.edu	37	5	54579538	54579538	+	Silent	SNP	T	T	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	54579538	T	C	54579538	2	2	548	1	0	0	0	0	0	0	0	1	4505	1722	60	3		3	DHX29	5	54579538	Silent	SNP	T	TCGA-CW-5588-01A-01D-1534-10		54579538	126335722	25	31906											
BHMT	635	broad.mit.edu;hgsc.bcm.edu	37	5	78423703	78423703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	78423703	G	A	78423703	3	1	548	1	0	0	0	0	1	0	0	0	1425	943	33	2	960	2	BHMT	5	78423703	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10	23844165	78423703	102491557	26	31907											
FAM193B	54540	broad.mit.edu;hgsc.bcm.edu	37	5	176951610	176951610	+	Silent	SNP	C	C	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	176951610	C	T	176951610	2	4	548	1	0	0	0	0	0	0	0	1	5529	697	25	2		2	FAM193B	5	176951610	Silent	SNP	C	TCGA-CW-5588-01A-01D-1534-10	98527907	176951610	3963650	27	31908											
RIOK1	83732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7395314	7395314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	7395314	C	T	7395314	3	4	548	1	0	0	0	0	1	0	0	0	13390	838	29	2	315	2	RIOK1	6	7395314	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10		7395314	163719753	28	31909											
SCGN	10590	broad.mit.edu;hgsc.bcm.edu	37	6	25670266	25670266	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	25670266	A	C	25670266	3	2	548	1	0	0	0	0	1	0	0	0	13916	217	8	5	455	5	SCGN	6	25670266	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10	18274952	25670266	145444801	29	31910											
HIST1H2BM	8342	hgsc.bcm.edu;ucsc.edu	37	6	27782975	27782975	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	-	27782975	G	-	27782975	7	5	548	1	0	1	0	1	0	0	0	0	7159	1058	37	0	156	0	HIST1H2BM	6	27782975	Frame_Shift_Del	DEL	G	TCGA-CW-5588-01A-01D-1534-10	2112709	27782975	143332092	30	31911											
ZNF193	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28195519	28195519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	28195519	C	G	28195519	3	3	548	1	0	0	0	0	1	0	0	0	17769	912	32	4	478	4	ZNF193	6	28195519	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10	412544	28195519	142919548	31	31912											
MAS1L	116511	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	29454618	29454618	+	Silent	SNP	T	T	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	29454618	T	A	29454618	2	1	548	1	0	0	0	0	0	0	0	1	9328	1799	63	5		5	MAS1L	6	29454618	Silent	SNP	T	TCGA-CW-5588-01A-01D-1534-10	1259099	29454618	141660449	32	31913											
GLP1R	2740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	39025301	39025301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	39025301	C	T	39025301	3	4	548	1	0	0	0	0	1	0	0	0	6459	739	26	2	239	2	GLP1R	6	39025301	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10	9570683	39025301	132089766	33	31914											
USP49	25862	broad.mit.edu	37	6	41773626	41773626	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	41773626	A	A	41773626	4	1	548	1	0	0	0	0	0	1	0	0	17092	1124	39	1	842	1	USP49	6	41773626	Nonsense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10	2748325	41773626	129341441	34	31915											
PRIM2	5558	broad.mit.edu	37	6	57512794	57512796	+	Splice_Site	DEL	ATT	-	-	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	-	57512796	-	-	57512794	8	5	548	1	0	1	0	1	0	0	1	0	12501	116	4	0		0	PRIM2	6	57512794	Splice_Site	DEL	ATT	TCGA-CW-5588-01A-01D-1534-10	15739168	57512794	113602273	35	31916											
FSCN1	6624	broad.mit.edu	37	7	5643128	5643128	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	5643128	T	T	5643128	3	4	548	1	0	0	0	0	1	0	0	0	6074	260	9	5	1001	5	FSCN1	7	5643128	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10		5643128	153495535	36	31917											
LONRF1	91694	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	12586770	12586770	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	12586770	A	C	12586770	3	2	548	1	0	0	0	0	1	0	0	0	8901	14	1	5	577	5	LONRF1	8	12586770	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10		12586770	133777252	37	31918											
AQP7	364	hgsc.bcm.edu	37	9	33386469	33386469	+	Silent	SNP	C	C	T	rs78695486		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	33386469	C	T	33386469	2	4	548	1	0	0	0	0	0	0	0	1	831	639	23	1		1	AQP7	9	33386469	Silent	SNP	C	TCGA-CW-5588-01A-01D-1534-10		33386469	107826962	38	31919											
SETX	23064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	135173490	135173490	+	Silent	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	135173490	G	A	135173490	2	1	548	1	0	0	0	0	0	0	0	1	14154	1020	36	2		2	SETX	9	135173490	Silent	SNP	G	TCGA-CW-5588-01A-01D-1534-10	101787021	135173490	6039941	39	31920											
SLC39A12	221074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	18276482	18276482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	18276482	C	A	18276482	3	1	548	1	0	0	0	0	1	0	0	0	14628	594	21	4	1193	4	SLC39A12	10	18276482	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10		18276482	117258265	40	31921											
ITGB1	3688	hgsc.bcm.edu	37	10	33217098	33217098	+	Silent	SNP	G	G	A	rs35057436	bycluster;byfrequency;by1000genomes	TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	33217098	G	A	33217098	2	1	548	1	0	0	0	0	0	0	0	1	7897	1136	40	1		1	ITGB1	10	33217098	Silent	SNP	G	TCGA-CW-5588-01A-01D-1534-10	14940616	33217098	102317649	41	31922											
PDZD8	118987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	119044693	119044693	+	Silent	SNP	T	T	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	119044693	T	C	119044693	2	2	548	1	0	0	0	0	0	0	0	1	11712	1451	51	3		3	PDZD8	10	119044693	Silent	SNP	T	TCGA-CW-5588-01A-01D-1534-10	85827595	119044693	16490054	42	31923											
FAM45A	404636	broad.mit.edu;hgsc.bcm.edu	37	10	120871395	120871395	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	120871395	A	C	120871395	3	2	548	1	0	0	0	0	1	0	0	0	5571	333	12	5	297	5	FAM45A	10	120871395	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10	1826702	120871395	14663352	43	31924											
QSER1	79832	broad.mit.edu	37	11	33005748	33005748	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	-	33005748	-	-	33005748	7	5	548	1	0	1	0	1	0	0	0	0	12895	522	18	0		0	QSER1	11	33005748	Frame_Shift_Del	DEL	C	TCGA-CW-5588-01A-01D-1534-10		33005748	102000768	44	31925											
OR4A5	81318	hgsc.bcm.edu;ucsc.edu	37	11	51411740	51411740	+	Missense_Mutation	SNP	A	A	G	rs35083184	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	51411740	A	G	51411740	3	3	548	1	0	0	0	0	1	0	0	0	11050	420	15	3	295	3	OR4A5	11	51411740	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10	18405992	51411740	83594776	45	31926											
PRDM10	56980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	129794821	129794821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	129794821	A	G	129794821	3	3	548	1	0	0	0	0	1	0	0	0	12461	72	3	3	1676	3	PRDM10	11	129794821	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10	78383081	129794821	5211695	46	31927											
TMTC1	83857	broad.mit.edu;hgsc.bcm.edu	37	12	29709847	29709847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	29709847	G	T	29709847	3	4	548	1	0	0	0	0	1	0	0	0	16272	971	34	4	1065	4	TMTC1	12	29709847	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10		29709847	104142048	47	31928											
C12orf40	283461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	40076779	40076779	+	Silent	SNP	A	A	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	40076779	A	T	40076779	2	4	548	1	0	0	0	0	0	0	0	1	1688	175	7	5		5	C12orf40	12	40076779	Silent	SNP	A	TCGA-CW-5588-01A-01D-1534-10	10366932	40076779	93775116	48	31929											
TMTC2	160335	broad.mit.edu;hgsc.bcm.edu	37	12	83290207	83290207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	83290207	G	A	83290207	3	1	548	1	0	0	0	0	1	0	0	0	16273	1058	37	1	1275	1	TMTC2	12	83290207	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10	43213428	83290207	50561688	49	31930											
STAB2	55576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104062492	104062492	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	104062492	C	A	104062492	4	1	548	1	0	0	0	0	0	1	0	0	15250	718	25	4	2235	4	STAB2	12	104062492	Nonsense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10	20772285	104062492	29789403	50	31931											
ZMYM2	7750	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	20657807	20657807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	20657807	A	G	20657807	3	3	548	1	0	0	0	0	1	0	0	0	17712	391	14	3	3918	3	ZMYM2	13	20657807	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10		20657807	94512071	51	31932											
MYO16	23026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	109535457	109535457	+	Silent	SNP	T	T	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	109535457	T	C	109535457	2	2	548	1	0	0	0	0	0	0	0	1	10071	1538	54	3		3	MYO16	13	109535457	Silent	SNP	T	TCGA-CW-5588-01A-01D-1534-10	88877650	109535457	5634421	52	31933											
OR5AU1	390445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21624096	21624096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	21624096	C	T	21624096	3	4	548	1	0	0	0	0	1	0	0	0	11154	797	28	2	1002	2	OR5AU1	14	21624096	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10		21624096	85725444	53	31934											
DDHD1	80821	hgsc.bcm.edu	37	14	53558606	53558608	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	-	53558608	CTT	-	53558606	7	5	548	1	0	1	0	1	0	0	0	0	4328	797	28	0	1556	0	DDHD1	14	53558606	In_Frame_Del	DEL	CTT	TCGA-CW-5588-01A-01D-1534-10	31934510	53558606	53790934	54	31935											
C14orf39	317761	broad.mit.edu;hgsc.bcm.edu	37	14	60932762	60932762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	60932762	C	T	60932762	3	4	548	1	0	0	0	0	1	0	0	0	1774	922	32	2	888	2	C14orf39	14	60932762	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10	7374156	60932762	46416778	55	31936											
ZFYVE26	23503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	68249593	68249593	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	68249593	A	T	68249593	3	4	548	1	0	0	0	0	1	0	0	0	17680	130	5	5	3431	5	ZFYVE26	14	68249593	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10	7316831	68249593	39099947	56	31937	403	2									
ZFYVE26	23503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	68249594	68249594	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	68249594	A	T	68249594	3	4	548	1	0	0	0	0	1	0	0	0	17680	98	4	5	3432	5	ZFYVE26	14	68249594	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10	1	68249594	39099946	57	31938	403	2									
TTBK2	146057	broad.mit.edu;hgsc.bcm.edu	37	15	43102877	43102877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	43102877	G	A	43102877	3	1	548	1	0	0	0	0	1	0	0	0	16689	1174	41	2	3005	2	TTBK2	15	43102877	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10		43102877	59428515	58	31939											
BLM	641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91292947	91292947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	91292947	C	T	91292947	3	4	548	1	0	0	0	0	1	0	0	0	1445	507	18	2	455	2	BLM	15	91292947	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10	48190070	91292947	11238445	59	31940											
TRIM16	10626	broad.mit.edu	37	17	15554772	15554772	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	15554772	G	G	15554772	3	3	548	1	0	0	0	0	1	0	0	0	16503	72	3	3	1566	3	TRIM16	17	15554772	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10		15554772	65640438	60	31941											
YES1	7525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	743325	743325	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	743325	A	C	743325	3	2	548	1	0	0	0	0	1	0	0	0	17486	333	12	5	840	5	YES1	18	743325	Missense_Mutation	SNP	A	TCGA-CW-5588-01A-01D-1534-10		743325	77333923	61	31942											
CD97	976	broad.mit.edu;hgsc.bcm.edu	37	19	14507236	14507236	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	14507236	G	C	14507236	3	2	548	1	0	0	0	0	1	0	0	0	3051	1020	36	4	447	4	CD97	19	14507236	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10		14507236	44621747	62	31943											
MED26	9441	broad.mit.edu;ucsc.edu	37	19	16687395	16687395	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	G	16687395	G	G	16687395	3	3	548	1	0	0	0	0	1	0	0	0	9451	1821	63	5	560	5	MED26	19	16687395	Missense_Mutation	SNP	T	TCGA-CW-5588-01A-01D-1534-10	2180159	16687395	42441588	63	31944											
ZNF665	79788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53668352	53668352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	53668352	C	T	53668352	3	4	548	1	0	0	0	0	1	0	0	0	18085	507	18	2	649	2	ZNF665	19	53668352	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10	36980957	53668352	5460631	64	31945											
NOP56	10528	broad.mit.edu;hgsc.bcm.edu	37	20	2637491	2637491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	A	2637491	G	A	2637491	3	1	548	1	0	0	0	0	1	0	0	0	10546	1349	47	2	1269	2	NOP56	20	2637491	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10		2637491	60388029	65	31946											
DDX17	10521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	38889717	38889717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	38889717	T	C	38889717	3	2	548	1	0	0	0	0	1	0	0	0	4346	1493	52	3	826	3	DDX17	22	38889717	Missense_Mutation	SNP	T	TCGA-CW-5588-01A-01D-1534-10		38889717	12414849	66	31947											
ARHGAP36	158763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	130218268	130218268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	T	130218268	C	T	130218268	3	4	548	1	0	0	0	0	1	0	0	0	883	855	30	2	649	2	ARHGAP36	23	130218268	Missense_Mutation	SNP	C	TCGA-CW-5588-01A-01D-1534-10		130218268	25052292	67	31948											
MAGEC1	9947	hgsc.bcm.edu;ucsc.edu	37	X	140993716	140993716	+	Missense_Mutation	SNP	G	G	C	rs78700965	bycluster;byfrequency	TCGA-CW-5588-01A-01D-1534-10	TCGA-CW-5588-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	574bd631-8862-468f-90e9-065aad6d1419	ab8b8c6d-9b42-4c32-b691-9cfd29859bf8	C	140993716	G	C	140993716	3	2	548	1	0	0	0	0	1	0	0	0	9187	1029	36	4	532	4	MAGEC1	23	140993716	Missense_Mutation	SNP	G	TCGA-CW-5588-01A-01D-1534-10	10775448	140993716	14276844	68	31949											
PRAMEF12	390999	hgsc.bcm.edu	37	1	12837358	12837358	+	Silent	SNP	G	G	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	12837358	G	A	12837358	2	1	549	1	0	0	0	0	0	0	0	1	12438	991	35	2		2	PRAMEF12	1	12837358	Silent	SNP	G	TCGA-CW-5589-01A-01D-1534-10		12837358	236413263	1	31950											
KAZ	0	broad.mit.edu;hgsc.bcm.edu	37	1	15370643	15370643	+	Silent	SNP	C	C	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	15370643	C	T	15370643	2	4	549	1	0	0	0	0	0	0	0	1	7995	639	23	1		1	KAZ	1	15370643	Silent	SNP	C	TCGA-CW-5589-01A-01D-1534-10	2533285	15370643	233879978	2	31951											
CDC14A	8556	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100961574	100961574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	100961574	G	C	100961574	3	2	549	1	0	0	0	0	1	0	0	0	3058	1001	35	4	1332	4	CDC14A	1	100961574	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	85590931	100961574	148289047	3	31952											
NBPF9	400818	broad.mit.edu	37	1	144813824	144813824	+	Silent	SNP	G	C	C	rs77446849	byfrequency	TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	144813824	C	C	144813824	2	2	549	1	0	0	0	0	0	0	0	1	10206	1277	45	4		4	NBPF9	1	144813824	Silent	SNP	G	TCGA-CW-5589-01A-01D-1534-10	43852250	144813824	104436797	4	31953											
NBPF9	400818	broad.mit.edu	37	1	144828610	144828610	+	Silent	SNP	T	G	G	rs76444116		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	G	144828610	G	G	144828610	2	3	549	1	0	0	0	0	0	0	0	1	10206	1509	53	5		5	NBPF9	1	144828610	Silent	SNP	T	TCGA-CW-5589-01A-01D-1534-10	14786	144828610	104422011	5	31954											
SEMA4A	64218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156146590	156146590	+	Silent	SNP	A	A	G	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	G	156146590	A	G	156146590	2	3	549	1	0	0	0	0	0	0	0	1	14044	175	7	3		3	SEMA4A	1	156146590	Silent	SNP	A	TCGA-CW-5589-01A-01D-1534-10	11317980	156146590	93104031	6	31955											
F5	2153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169529926	169529926	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	169529926	T	A	169529926	3	1	549	1	0	0	0	0	1	0	0	0	5350	1783	62	5	6310	5	F5	1	169529926	Missense_Mutation	SNP	T	TCGA-CW-5589-01A-01D-1534-10	13383336	169529926	79720695	7	31956											
ALK	238	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	29462601	29462601	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	-	29462601	T	-	29462601	7	5	549	1	0	1	0	1	0	0	0	0	525	1609	56	0	2630	0	ALK	2	29462601	Frame_Shift_Del	DEL	T	TCGA-CW-5589-01A-01D-1534-10		29462601	213736772	8	31957											
APLF	200558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	68740264	68740264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	68740264	C	A	68740264	3	1	549	1	0	0	0	0	1	0	0	0	776	623	22	4	408	4	APLF	2	68740264	Missense_Mutation	SNP	C	TCGA-CW-5589-01A-01D-1534-10	39277663	68740264	174459109	9	31958											
RANBP2	5903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	109379866	109379866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	109379866	G	C	109379866	3	2	549	1	0	0	0	0	1	0	0	0	13041	1223	43	4	2949	4	RANBP2	2	109379866	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	40639602	109379866	133819507	10	31959											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu	37	3	52663052	52663052	+	Splice_Site	SNP	C	C	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	52663052	C	A	52663052	5	1	549	1	0	0	0	0	0	0	1	0	11498	927	32	4	3675	4	PBRM1	3	52663052	Splice_Site	SNP	C	TCGA-CW-5589-01A-01D-1534-10		52663052	145359378	11	31960											
STAG1	10274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	136062787	136062787	+	Silent	SNP	G	G	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	136062787	G	T	136062787	2	4	549	1	0	0	0	0	0	0	0	1	15254	1219	43	4		4	STAG1	3	136062787	Silent	SNP	G	TCGA-CW-5589-01A-01D-1534-10	83399735	136062787	61959643	12	31961											
ATR	545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	142281209	142281209	+	Silent	SNP	A	A	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	142281209	A	T	142281209	2	4	549	1	0	0	0	0	0	0	0	1	1204	59	3	5		5	ATR	3	142281209	Silent	SNP	A	TCGA-CW-5589-01A-01D-1534-10	6218422	142281209	55741221	13	31962											
NIPBL	25836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	37020560	37020560	+	Splice_Site	SNP	G	G	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	37020560	G	T	37020560	5	4	549	1	0	0	0	0	0	0	1	0	10435	1043	36	4	5108	4	NIPBL	5	37020560	Splice_Site	SNP	G	TCGA-CW-5589-01A-01D-1534-10		37020560	143894700	14	31963											
BDP1	55814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	70835434	70835434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	70835434	G	A	70835434	3	1	549	1	0	0	0	0	1	0	0	0	1395	942	33	2	6090	2	BDP1	5	70835434	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	33814874	70835434	110079826	15	31964											
CMYA5	202333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	79031276	79031276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	79031276	G	C	79031276	3	2	549	1	0	0	0	0	1	0	0	0	3592	971	34	4	6694	4	CMYA5	5	79031276	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	8195842	79031276	101883984	16	31965											
DPCR1	135656	hgsc.bcm.edu	37	6	30918748	30918748	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	30918748	A	C	30918748	3	2	549	1	0	0	0	0	1	0	0	0	4714	130	5	5	2513	5	DPCR1	6	30918748	Missense_Mutation	SNP	A	TCGA-CW-5589-01A-01D-1534-10		30918748	140196319	17	31966											
CRIP3	401262	hgsc.bcm.edu;ucsc.edu	37	6	43273854	43273855	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	43273855	-	C	43273854	7	5	549	1	0	1	1	0	0	0	0	0	3878	1538	54	0	118	0	CRIP3	6	43273854	Frame_Shift_Ins	INS	-	TCGA-CW-5589-01A-01D-1534-10	12355106	43273854	127841213	18	31967											
POLH	5429	hgsc.bcm.edu;ucsc.edu	37	6	43581424	43581425	+	In_Frame_Ins	INS	-	-	TGT	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	TGT	43581425	-	TGT	43581424	7	5	549	1	0	1	1	0	0	0	0	0	12209	900	32	0	1310	0	POLH	6	43581424	In_Frame_Ins	INS	-	TCGA-CW-5589-01A-01D-1534-10	307570	43581424	127533643	19	31968											
PRIM2	5558	broad.mit.edu	37	6	57512787	57512788	+	Splice_Site	INS	-	CACCAAGGC	CACCAAGGC	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	CACCAAGGC	57512788	CACCAAGGC	CACCAAGGC	57512787	8	5	549	1	0	1	1	0	0	0	1	0	12501	1739	60	0		0	PRIM2	6	57512787	Splice_Site	INS	-	TCGA-CW-5589-01A-01D-1534-10	13931363	57512787	113602280	20	31969											
FIG4	9896	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	110083350	110083350	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	110083350	A	C	110083350	3	2	549	1	0	0	0	0	1	0	0	0	5895	14	1	5	1374	5	FIG4	6	110083350	Missense_Mutation	SNP	A	TCGA-CW-5589-01A-01D-1534-10	52570563	110083350	61031717	21	31970											
BLVRA	644	hgsc.bcm.edu;ucsc.edu	37	7	43827571	43827572	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	-	43827572	GC	-	43827571	7	5	549	1	0	1	0	1	0	0	0	0	1451	1310	46	0	87	0	BLVRA	7	43827571	Frame_Shift_Del	DEL	GC	TCGA-CW-5589-01A-01D-1534-10		43827571	115311092	22	31971											
MLL5	55904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	104753209	104753209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	G	104753209	A	G	104753209	3	3	549	1	0	0	0	0	1	0	0	0	9631	217	8	3	5104	3	MLL5	7	104753209	Missense_Mutation	SNP	A	TCGA-CW-5589-01A-01D-1534-10	60925638	104753209	54385454	23	31972											
POTEA	340441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	43152262	43152262	+	Silent	SNP	G	G	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	43152262	G	A	43152262	2	1	549	1	0	0	0	0	0	0	0	1	12268	1165	41	2		2	POTEA	8	43152262	Silent	SNP	G	TCGA-CW-5589-01A-01D-1534-10		43152262	103211760	24	31973											
ST18	9705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	53085059	53085059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	53085059	C	A	53085059	3	1	549	1	0	0	0	0	1	0	0	0	15224	478	17	4	2849	4	ST18	8	53085059	Missense_Mutation	SNP	C	TCGA-CW-5589-01A-01D-1534-10	9932797	53085059	93278963	25	31974											
SLC39A4	55630	broad.mit.edu	37	8	145642062	145642062	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	145642062	T	T	145642062	3	4	549	1	0	0	0	0	1	0	0	0	14633	768	27	1	1996	1	SLC39A4	8	145642062	Missense_Mutation	SNP	C	TCGA-CW-5589-01A-01D-1534-10	92557003	145642062	721960	26	31975											
ARHGAP39	80728	broad.mit.edu;hgsc.bcm.edu	37	8	145759519	145759519	+	Silent	SNP	G	G	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	145759519	G	A	145759519	2	1	549	1	0	0	0	0	0	0	0	1	884	1335	47	2		2	ARHGAP39	8	145759519	Silent	SNP	G	TCGA-CW-5589-01A-01D-1534-10	117457	145759519	604503	27	31976											
SYK	6850	broad.mit.edu;ucsc.edu	37	9	93606288	93606288	+	Silent	SNP	T	C	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	93606288	C	C	93606288	2	2	549	1	0	0	0	0	0	0	0	1	15450	1461	51	3		3	SYK	9	93606288	Silent	SNP	T	TCGA-CW-5589-01A-01D-1534-10		93606288	47607143	28	31977											
SH3GLB2	56904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131772971	131772971	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	131772971	A	C	131772971	3	2	549	1	0	0	0	0	1	0	0	0	14267	318	11	5	581	5	SH3GLB2	9	131772971	Missense_Mutation	SNP	A	TCGA-CW-5589-01A-01D-1534-10	38166683	131772971	9440460	29	31978											
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	17110704	17110704	+	Silent	SNP	T	T	G	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	G	17110704	T	G	17110704	2	3	549	1	0	0	0	0	0	0	0	1	4053	1451	51	5		5	CUBN	10	17110704	Silent	SNP	T	TCGA-CW-5589-01A-01D-1534-10		17110704	118424043	30	31979											
DCLRE1A	9937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	115609321	115609321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	115609321	C	T	115609321	3	4	549	1	0	0	0	0	1	0	0	0	4296	565	20	2	1611	2	DCLRE1A	10	115609321	Missense_Mutation	SNP	C	TCGA-CW-5589-01A-01D-1534-10	98498617	115609321	19925426	31	31980											
EBF3	253738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	131638545	131638545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	131638545	G	A	131638545	3	1	549	1	0	0	0	0	1	0	0	0	4884	1174	41	2	75	2	EBF3	10	131638545	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	16029224	131638545	3896202	32	31981											
PHRF1	57661	broad.mit.edu	37	11	608822	608822	+	Silent	SNP	G	A	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	608822	A	A	608822	2	1	549	1	0	0	0	0	0	0	0	1	11868	1020	36	2		2	PHRF1	11	608822	Silent	SNP	G	TCGA-CW-5589-01A-01D-1534-10		608822	134397694	33	31982											
DEAF1	10522	broad.mit.edu;hgsc.bcm.edu	37	11	687971	687971	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	687971	C	A	687971	4	1	549	1	0	0	0	0	0	1	0	0	4382	835	29	4	1129	4	DEAF1	11	687971	Nonsense_Mutation	SNP	C	TCGA-CW-5589-01A-01D-1534-10	79149	687971	134318545	34	31983											
OR5AR1	219493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	56431747	56431747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	56431747	G	T	56431747	4	4	549	1	0	0	0	0	0	1	0	0	11152	1291	45	4	588	4	OR5AR1	11	56431747	Nonsense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	55743776	56431747	78574769	35	31984											
SSH3	54961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	67072383	67072383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	67072383	G	A	67072383	3	1	549	1	0	0	0	0	1	0	0	0	15198	1116	39	1	254	1	SSH3	11	67072383	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	10640636	67072383	67934133	36	31985											
PRB1	5542	broad.mit.edu;hgsc.bcm.edu	37	12	11506647	11506647	+	Silent	SNP	T	T	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	11506647	T	C	11506647	2	2	549	1	0	0	0	0	0	0	0	1	12452	1606	56	3		3	PRB1	12	11506647	Silent	SNP	T	TCGA-CW-5589-01A-01D-1534-10		11506647	122345248	37	31986											
TMTC2	160335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	83525988	83525988	+	Splice_Site	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	83525988	G	C	83525988	5	2	549	1	0	0	0	0	0	0	1	0	16273	1043	36	4	2377	4	TMTC2	12	83525988	Splice_Site	SNP	G	TCGA-CW-5589-01A-01D-1534-10	72019341	83525988	50325907	38	31987											
DTX1	1840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113531851	113531851	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	G	113531851	C	G	113531851	3	3	549	1	0	0	0	0	1	0	0	0	4795	855	30	4	1192	4	DTX1	12	113531851	Missense_Mutation	SNP	C	TCGA-CW-5589-01A-01D-1534-10	30005863	113531851	20320044	39	31988											
HIP1R	9026	broad.mit.edu	37	12	123345228	123345228	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	G	123345228	G	G	123345228	3	3	549	1	0	0	0	0	1	0	0	0	7122	304	11	3	2773	3	HIP1R	12	123345228	Missense_Mutation	SNP	A	TCGA-CW-5589-01A-01D-1534-10	9813377	123345228	10506667	40	31989											
LATS2	26524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	21562131	21562131	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	21562131	G	C	21562131	3	2	549	1	0	0	0	0	1	0	0	0	8654	962	34	4	1498	4	LATS2	13	21562131	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10		21562131	93607747	41	31990											
NEK5	341676	broad.mit.edu;hgsc.bcm.edu	37	13	52661584	52661584	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	52661584	G	C	52661584	3	2	549	1	0	0	0	0	1	0	0	0	10334	1058	37	4	876	4	NEK5	13	52661584	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	31099453	52661584	62508294	42	31991											
PCNX	22990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	71524405	71524405	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	G	71524405	C	G	71524405	3	3	549	1	0	0	0	0	1	0	0	0	11598	912	32	4	4918	4	PCNX	14	71524405	Missense_Mutation	SNP	C	TCGA-CW-5589-01A-01D-1534-10		71524405	35825135	43	31992											
DPF3	8110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	73141008	73141008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	73141008	T	C	73141008	3	2	549	1	0	0	0	0	1	0	0	0	4720	1464	51	3	270	3	DPF3	14	73141008	Missense_Mutation	SNP	T	TCGA-CW-5589-01A-01D-1534-10	1616603	73141008	34208532	44	31993											
GTF2A1	2957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	81682787	81682787	+	Silent	SNP	C	C	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	81682787	C	T	81682787	2	4	549	1	0	0	0	0	0	0	0	1	6859	581	21	2		2	GTF2A1	14	81682787	Silent	SNP	C	TCGA-CW-5589-01A-01D-1534-10	8541779	81682787	25666753	45	31994											
UBE3A	7337	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	25616769	25616769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	25616769	G	C	25616769	3	2	549	1	0	0	0	0	1	0	0	0	16891	1368	48	4	2098	4	UBE3A	15	25616769	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10		25616769	76914623	46	31995											
RAB8B	51762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63547744	63547744	+	Silent	SNP	C	C	G	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	G	63547744	C	G	63547744	2	3	549	1	0	0	0	0	0	0	0	1	12970	668	24	4		4	RAB8B	15	63547744	Silent	SNP	C	TCGA-CW-5589-01A-01D-1534-10	37930975	63547744	38983648	47	31996											
DENND4A	10260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	66044741	66044741	+	Silent	SNP	G	G	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	66044741	G	A	66044741	2	1	549	1	0	0	0	0	0	0	0	1	4435	1045	37	1		1	DENND4A	15	66044741	Silent	SNP	G	TCGA-CW-5589-01A-01D-1534-10	2496997	66044741	36486651	48	31997											
NLGN2	57555	broad.mit.edu;hgsc.bcm.edu	37	17	7319145	7319145	+	Silent	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	7319145	G	C	7319145	2	2	549	1	0	0	0	0	0	0	0	1	10469	1306	46	4		4	NLGN2	17	7319145	Silent	SNP	G	TCGA-CW-5589-01A-01D-1534-10		7319145	73876065	49	31998											
SPAG5	10615	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26905536	26905536	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	26905536	T	A	26905536	3	1	549	1	0	0	0	0	1	0	0	0	14994	1551	54	5	388	5	SPAG5	17	26905536	Missense_Mutation	SNP	T	TCGA-CW-5589-01A-01D-1534-10	19586391	26905536	54289674	50	31999											
SGK494	124923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26939689	26939689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	26939689	G	T	26939689	3	4	549	1	0	0	0	0	1	0	0	0	14226	1232	43	4	770	4	SGK494	17	26939689	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	34153	26939689	54255521	51	32000											
SUZ12	23512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30321020	30321020	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	30321020	A	C	30321020	3	2	549	1	0	0	0	0	1	0	0	0	15428	43	2	5	1476	5	SUZ12	17	30321020	Missense_Mutation	SNP	A	TCGA-CW-5589-01A-01D-1534-10	3381331	30321020	50874190	52	32001											
RARA	5914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38508596	38508596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	G	38508596	A	G	38508596	3	3	549	1	0	0	0	0	1	0	0	0	13065	246	9	3	829	3	RARA	17	38508596	Missense_Mutation	SNP	A	TCGA-CW-5589-01A-01D-1534-10	8187576	38508596	42686614	53	32002											
NUP85	79902	broad.mit.edu;ucsc.edu	37	17	73205917	73205918	+	Splice_Site	INS	-	A	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	73205918	A	A	73205917	8	5	549	1	0	1	1	0	0	0	1	0	10777	956	33	0	137	0	NUP85	17	73205917	Splice_Site	INS	-	TCGA-CW-5589-01A-01D-1534-10	34697321	73205917	7989293	54	32003											
ZNF20	7568	broad.mit.edu	37	19	12258560	12258560	+	Translation_Start_Site	SNP	G	T	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	12258560	T	T	12258560	1	4	549	1	0	0	0	0	0	0	0	0	17773	986	34	4		4	ZNF20	19	12258560	Translation_Start_Site	SNP	G	TCGA-CW-5589-01A-01D-1534-10		12258560	46870423	55	32004											
RAB3A	5864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18309636	18309636	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	18309636	G	C	18309636	4	2	549	1	0	0	0	0	0	1	0	0	12944	1294	45	4	299	4	RAB3A	19	18309636	Nonsense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	6051076	18309636	40819347	56	32005											
TM6SF2	53345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	19380554	19380554	+	Silent	SNP	G	G	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	19380554	G	C	19380554	2	2	549	1	0	0	0	0	0	0	0	1	15985	929	33	4		4	TM6SF2	19	19380554	Silent	SNP	G	TCGA-CW-5589-01A-01D-1534-10	1070918	19380554	39748429	57	32006											
ZNF546	339327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40519782	40519782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	40519782	T	C	40519782	3	2	549	1	0	0	0	0	1	0	0	0	17990	1406	49	3	623	3	ZNF546	19	40519782	Missense_Mutation	SNP	T	TCGA-CW-5589-01A-01D-1534-10	21139228	40519782	18609201	58	32007											
PSG9	5678	hgsc.bcm.edu;ucsc.edu	37	19	43772159	43772159	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	-	43772159	T	-	43772159	7	5	549	1	0	1	0	1	0	0	0	0	12672	1606	56	0	1093	0	PSG9	19	43772159	Frame_Shift_Del	DEL	T	TCGA-CW-5589-01A-01D-1534-10	3252377	43772159	15356824	59	32008											
NLRP9	338321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56243618	56243618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	56243618	G	A	56243618	3	1	549	1	0	0	0	0	1	0	0	0	10491	1000	35	2	1428	2	NLRP9	19	56243618	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	12471459	56243618	2885365	60	32009											
ZHX3	23051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39831405	39831405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	T	39831405	C	T	39831405	3	4	549	1	0	0	0	0	1	0	0	0	17689	739	26	2	726	2	ZHX3	20	39831405	Missense_Mutation	SNP	C	TCGA-CW-5589-01A-01D-1534-10		39831405	23194115	61	32010											
C20orf85	128602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	56728656	56728656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	56728656	G	A	56728656	3	1	549	1	0	0	0	0	1	0	0	0	2122	1232	43	2	131	2	C20orf85	20	56728656	Missense_Mutation	SNP	G	TCGA-CW-5589-01A-01D-1534-10	16897251	56728656	6296864	62	32011											
BRWD1	54014	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	40568354	40568354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	40568354	C	A	40568354	3	1	549	1	0	0	0	0	1	0	0	0	1527	565	20	4	568	4	BRWD1	21	40568354	Missense_Mutation	SNP	C	TCGA-CW-5589-01A-01D-1534-10		40568354	7561541	63	32012											
CYB5R3	1727	broad.mit.edu;hgsc.bcm.edu	37	22	43024289	43024289	+	Splice_Site	SNP	T	T	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	43024289	T	A	43024289	5	1	549	1	0	0	0	0	0	0	1	0	4130	1594	55	5	593	5	CYB5R3	22	43024289	Splice_Site	SNP	T	TCGA-CW-5589-01A-01D-1534-10		43024289	8280277	64	32013											
POU3F4	5456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	82763423	82763423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	C	82763423	T	C	82763423	3	2	549	1	0	0	0	0	1	0	0	0	12284	1841	64	3	93	3	POU3F4	23	82763423	Missense_Mutation	SNP	T	TCGA-CW-5589-01A-01D-1534-10		82763423	72507137	65	32014											
ARMCX3	51566	broad.mit.edu;hgsc.bcm.edu	37	X	100880895	100880895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5589-01A-01D-1534-10	TCGA-CW-5589-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b353345-c75f-45fa-a2e3-86782b868abc	f3decfca-d5a9-49b9-8a45-98a8f305dd77	A	100880895	T	A	100880895	3	1	549	1	0	0	0	0	1	0	0	0	961	1841	64	5	928	5	ARMCX3	23	100880895	Missense_Mutation	SNP	T	TCGA-CW-5589-01A-01D-1534-10	18117472	100880895	54389665	66	32015											
USP24	23358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55638068	55638068	+	Silent	SNP	G	G	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	55638068	G	A	55638068	2	1	550	1	0	0	0	0	0	0	0	1	17067	1161	41	2		2	USP24	1	55638068	Silent	SNP	G	TCGA-CW-5591-01A-01D-1534-10		55638068	193612553	1	32016											
USP24	23358	broad.mit.edu;hgsc.bcm.edu	37	1	55642117	55642117	+	Splice_Site	SNP	C	C	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	55642117	C	A	55642117	5	1	550	1	0	0	0	0	0	0	1	0	17067	695	24	4	7636	4	USP24	1	55642117	Splice_Site	SNP	C	TCGA-CW-5591-01A-01D-1534-10	4049	55642117	193608504	2	32017											
TNNI1	7135	broad.mit.edu	37	1	201398087	201398087	+	RNA	SNP	A	T	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	201398087	T	T	201398087	1	4	550	0	1	0	0	0	0	0	0	0	16338	58	2	5		5	TNNI1	1	201398087	RNA	SNP	A	TCGA-CW-5591-01A-01D-1534-10	145755970	201398087	47852534	3	32018											
TARBP1	6894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	234541769	234541769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	234541769	G	A	234541769	3	1	550	1	0	0	0	0	1	0	0	0	15567	971	34	2	1024	2	TARBP1	1	234541769	Missense_Mutation	SNP	G	TCGA-CW-5591-01A-01D-1534-10	33143682	234541769	14708852	4	32019											
ZSWIM2	151112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	187693068	187693068	+	Silent	SNP	A	A	C	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	C	187693068	A	C	187693068	2	2	550	1	0	0	0	0	0	0	0	1	18253	291	11	5		5	ZSWIM2	2	187693068	Silent	SNP	A	TCGA-CW-5591-01A-01D-1534-10		187693068	55506305	5	32020											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191590	10191590	+	Nonsense_Mutation	SNP	C	C	T	rs5030825		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	10191590	C	T	10191590	4	4	550	1	0	0	0	0	0	1	0	0	17174	711	25	2	593	2	VHL	3	10191590	Nonsense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10		10191590	187830840	6	32021											
NKTR	4820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	42679500	42679500	+	Silent	SNP	T	T	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	42679500	T	G	42679500	2	3	550	1	0	0	0	0	0	0	0	1	10455	1828	64	5		5	NKTR	3	42679500	Silent	SNP	T	TCGA-CW-5591-01A-01D-1534-10	32487910	42679500	155342930	7	32022											
ZNF445	353274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	44489465	44489465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	44489465	C	A	44489465	3	1	550	1	0	0	0	0	1	0	0	0	17930	912	32	4	1401	4	ZNF445	3	44489465	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10	1809965	44489465	153532965	8	32023											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47143043	47143043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	47143043	C	A	47143043	3	1	550	1	0	0	0	0	1	0	0	0	14144	856	30	4	2830	4	SETD2	3	47143043	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10	2653578	47143043	150879387	9	32024											
RAP2B	5912	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	152880567	152880567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	152880567	A	G	152880567	3	3	550	1	0	0	0	0	1	0	0	0	13054	217	8	3	87	3	RAP2B	3	152880567	Missense_Mutation	SNP	A	TCGA-CW-5591-01A-01D-1534-10	105737524	152880567	45141863	10	32025											
RNF4	6047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	2498774	2498774	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	C	2498774	A	C	2498774	3	2	550	1	0	0	0	0	1	0	0	0	13505	188	7	5	56	5	RNF4	4	2498774	Missense_Mutation	SNP	A	TCGA-CW-5591-01A-01D-1534-10		2498774	188655502	11	32026											
MMRN1	22915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	90874205	90874205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	90874205	C	T	90874205	3	4	550	1	0	0	0	0	1	0	0	0	9677	536	19	1	3353	1	MMRN1	4	90874205	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10	88375431	90874205	100280071	12	32027											
PRSS48	345062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	152212274	152212274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	152212274	A	G	152212274	3	3	550	1	0	0	0	0	1	0	0	0	12640	333	12	3	674	3	PRSS48	4	152212274	Missense_Mutation	SNP	A	TCGA-CW-5591-01A-01D-1534-10	61338069	152212274	38942002	13	32028											
RAPGEF2	9693	broad.mit.edu	37	4	160275198	160275198	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	-	160275198	-	-	160275198	7	5	550	1	0	1	0	1	0	0	0	0	13057	1362	47	0	4254	0	RAPGEF2	4	160275198	Frame_Shift_Del	DEL	G	TCGA-CW-5591-01A-01D-1534-10	8062924	160275198	30879078	14	32029											
LRRC14B	389257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	194972	194972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	194972	C	G	194972	3	3	550	1	0	0	0	0	1	0	0	0	8976	507	18	4	1055	4	LRRC14B	5	194972	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10		194972	180720288	15	32030											
HSPA4	3308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	132424155	132424155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	132424155	G	T	132424155	3	4	550	1	0	0	0	0	1	0	0	0	7419	1319	46	4	1079	4	HSPA4	5	132424155	Missense_Mutation	SNP	G	TCGA-CW-5591-01A-01D-1534-10	132229183	132424155	48491105	16	32031											
ABCC10	89845	broad.mit.edu	37	6	43417778	43417778	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	C	43417778	C	C	43417778	3	2	550	1	0	0	0	0	1	0	0	0	50	962	34	4	4422	4	ABCC10	6	43417778	Missense_Mutation	SNP	G	TCGA-CW-5591-01A-01D-1534-10		43417778	127697289	17	32032											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56357868	56357868	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	56357868	A	T	56357868	3	4	550	1	0	0	0	0	1	0	0	0	4785	304	11	5	3050	5	DST	6	56357868	Missense_Mutation	SNP	A	TCGA-CW-5591-01A-01D-1534-10	12940090	56357868	114757199	18	32033											
CACNA2D1	781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	81635088	81635088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	81635088	C	A	81635088	3	1	550	1	0	0	0	0	1	0	0	0	2550	536	19	4	1859	4	CACNA2D1	7	81635088	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10		81635088	77503575	19	32034											
KIAA0020	9933	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	2823805	2823805	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	2823805	C	G	2823805	3	3	550	1	0	0	0	0	1	0	0	0	8159	912	32	4	810	4	KIAA0020	9	2823805	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10		2823805	138389626	20	32035											
ZNF169	169841	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	97055309	97055309	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	97055309	C	G	97055309	3	3	550	1	0	0	0	0	1	0	0	0	17754	507	18	4	224	4	ZNF169	9	97055309	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10	94231504	97055309	44158122	21	32036											
TCF7L2	6934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	114901063	114901063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	114901063	G	T	114901063	3	4	550	1	0	0	0	0	1	0	0	0	15710	942	33	4	840	4	TCF7L2	10	114901063	Missense_Mutation	SNP	G	TCGA-CW-5591-01A-01D-1534-10		114901063	20633684	22	32037											
B3GAT1	27087	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	134252621	134252621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	134252621	C	T	134252621	3	4	550	1	0	0	0	0	1	0	0	0	1253	739	26	2	111	2	B3GAT1	11	134252621	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10		134252621	753895	23	32038											
LTBR	4055	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6493822	6493822	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	6493822	C	G	6493822	3	3	550	1	0	0	0	0	1	0	0	0	9084	506	18	4	171	4	LTBR	12	6493822	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10		6493822	127358073	24	32039											
KRT3	3850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53188042	53188042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	53188042	G	A	53188042	3	1	550	1	0	0	0	0	1	0	0	0	8473	1174	41	2	1199	2	KRT3	12	53188042	Missense_Mutation	SNP	G	TCGA-CW-5591-01A-01D-1534-10	46694220	53188042	80663853	25	32040											
GPN3	51184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	110897606	110897606	+	Silent	SNP	G	G	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	110897606	G	T	110897606	2	4	550	1	0	0	0	0	0	0	0	1	6626	1335	47	4		4	GPN3	12	110897606	Silent	SNP	G	TCGA-CW-5591-01A-01D-1534-10	57709564	110897606	22954289	26	32041											
NOS1	4842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117723925	117723925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	117723925	T	A	117723925	3	1	550	1	0	0	0	0	1	0	0	0	10548	1580	55	5	3126	5	NOS1	12	117723925	Missense_Mutation	SNP	T	TCGA-CW-5591-01A-01D-1534-10	6826319	117723925	16127970	27	32042											
KIAA0317	9870	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75136696	75136696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	75136696	G	A	75136696	3	1	550	1	0	0	0	0	1	0	0	0	8174	1261	44	2	757	2	KIAA0317	14	75136696	Missense_Mutation	SNP	G	TCGA-CW-5591-01A-01D-1534-10		75136696	32212844	28	32043											
DIO2	1734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	80669184	80669184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	80669184	C	A	80669184	3	1	550	1	0	0	0	0	1	0	0	0	4527	652	23	4	155	4	DIO2	14	80669184	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10	5532488	80669184	26680356	29	32044											
FLRT2	23768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	86088605	86088605	+	Silent	SNP	C	C	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	86088605	C	T	86088605	2	4	550	1	0	0	0	0	0	0	0	1	5946	842	30	2		2	FLRT2	14	86088605	Silent	SNP	C	TCGA-CW-5591-01A-01D-1534-10	5419421	86088605	21260935	30	32045											
SENP8	123228	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	72432091	72432091	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	72432091	C	T	72432091	4	4	550	1	0	0	0	0	0	1	0	0	14065	827	29	2	129	2	SENP8	15	72432091	Nonsense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10		72432091	30099301	31	32046											
TBC1D24	57465	broad.mit.edu;hgsc.bcm.edu	37	16	2546380	2546380	+	Silent	SNP	C	C	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	2546380	C	A	2546380	2	1	550	1	0	0	0	0	0	0	0	1	15626	874	31	4		4	TBC1D24	16	2546380	Silent	SNP	C	TCGA-CW-5591-01A-01D-1534-10		2546380	87808373	32	32047											
GPR97	222487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57713136	57713136	+	Silent	SNP	C	C	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	57713136	C	A	57713136	2	1	550	1	0	0	0	0	0	0	0	1	6727	726	26	4		4	GPR97	16	57713136	Silent	SNP	C	TCGA-CW-5591-01A-01D-1534-10	55166756	57713136	32641617	33	32048											
NFATC3	4775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68156583	68156583	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	C	68156583	G	C	68156583	3	2	550	1	0	0	0	0	1	0	0	0	10371	1000	35	4	803	4	NFATC3	16	68156583	Missense_Mutation	SNP	G	TCGA-CW-5591-01A-01D-1534-10	10443447	68156583	22198170	34	32049											
NLRP1	22861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5463037	5463038	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	C	5463038	-	C	5463037	7	5	550	1	0	1	1	0	0	0	0	0	10478	1261	44	0	3573	0	NLRP1	17	5463037	Frame_Shift_Ins	INS	-	TCGA-CW-5591-01A-01D-1534-10		5463037	75732173	35	32050	404	2									
NLRP1	22861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5463038	5463039	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	C	5463039	-	C	5463038	7	5	550	1	0	1	1	0	0	0	0	0	10478	1722	60	0	3574	0	NLRP1	17	5463038	Frame_Shift_Ins	INS	-	TCGA-CW-5591-01A-01D-1534-10	1	5463038	75732172	36	32051	404	2									
IMPA2	3613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	11999101	11999101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	11999101	T	G	11999101	3	3	550	1	0	0	0	0	1	0	0	0	7730	1435	50	5	151	5	IMPA2	18	11999101	Missense_Mutation	SNP	T	TCGA-CW-5591-01A-01D-1534-10		11999101	66078147	37	32052											
MLLT1	4298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6218035	6218035	+	Silent	SNP	C	C	T	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	T	6218035	C	T	6218035	2	4	550	1	0	0	0	0	0	0	0	1	9632	523	19	1		1	MLLT1	19	6218035	Silent	SNP	C	TCGA-CW-5591-01A-01D-1534-10		6218035	52910948	38	32053											
ZNF98	148198	broad.mit.edu;hgsc.bcm.edu	37	19	22574443	22574443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	C	22574443	T	C	22574443	3	2	550	1	0	0	0	0	1	0	0	0	18215	1406	49	3	128	3	ZNF98	19	22574443	Missense_Mutation	SNP	T	TCGA-CW-5591-01A-01D-1534-10	16356408	22574443	36554540	39	32054											
ZNF765	91661	broad.mit.edu	37	19	53911474	53911474	+	Silent	SNP	A	G	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	53911474	G	G	53911474	2	3	550	1	0	0	0	0	0	0	0	1	18151	69	3	3		3	ZNF765	19	53911474	Silent	SNP	A	TCGA-CW-5591-01A-01D-1534-10	31337031	53911474	5217509	40	32055											
CENPB	1059	hgsc.bcm.edu	37	20	3765529	3765529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	3765529	C	A	3765529	3	1	550	1	0	0	0	0	1	0	0	0	3229	680	24	4	201	4	CENPB	20	3765529	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10		3765529	59259991	41	32056	405	2									
CENPB	1059	hgsc.bcm.edu	37	20	3765532	3765532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	A	3765532	C	A	3765532	3	1	550	1	0	0	0	0	1	0	0	0	3229	680	24	4	204	4	CENPB	20	3765532	Missense_Mutation	SNP	C	TCGA-CW-5591-01A-01D-1534-10	3	3765532	59259988	42	32057	405	2									
SON	6651	hgsc.bcm.edu	37	21	34925612	34925635	+	In_Frame_Del	DEL	GTCCTGGAGTCTTCGGCTGTGACC	GTCCTGGAGTCTTCGGCTGTGACC	-	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	GTCCTGGAGTCTTCGGCTGTGACC	GTCCTGGAGTCTTCGGCTGTGACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	-	34925635	GTCCTGGAGTCTTCGGCTGTGACC	-	34925612	7	5	550	1	0	1	0	1	0	0	0	0	14939	1377	48	0	4085	0	SON	21	34925612	In_Frame_Del	DEL	GTCCTGGAGTCTTCGGCTGTGACC	TCGA-CW-5591-01A-01D-1534-10		34925612	13204283	43	32058											
UPB1	51733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24921682	24921682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	G	24921682	A	G	24921682	3	3	550	1	0	0	0	0	1	0	0	0	17014	275	10	3	1113	3	UPB1	22	24921682	Missense_Mutation	SNP	A	TCGA-CW-5591-01A-01D-1534-10		24921682	26382884	44	32059											
FRMD7	90167	hgsc.bcm.edu	37	X	131261862	131261862	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CW-5591-01A-01D-1534-10	TCGA-CW-5591-11A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	02ac80cd-caa3-4dbc-9b57-4a324cec0ad4	62481cc6-a290-4771-a728-4a69a49f1cfc	-	131261862	A	-	131261862	7	5	550	1	0	1	0	1	0	0	0	0	6062	372	13	0	2181	0	FRMD7	23	131261862	Frame_Shift_Del	DEL	A	TCGA-CW-5591-01A-01D-1534-10		131261862	24008698	45	32060											
PLA2G2F	64600	broad.mit.edu	37	1	20470069	20470069	+	Silent	SNP	G	A	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	20470069	A	A	20470069	2	1	551	1	0	0	0	0	0	0	0	1	12006	991	35	2		2	PLA2G2F	1	20470069	Silent	SNP	G	TCGA-CW-6087-01A-11D-1669-08		20470069	228780552	1	32061											
EIF4G3	8672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	21268372	21268372	+	Silent	SNP	C	C	T	rs150884106	byfrequency;alternate_allele	TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	21268372	C	T	21268372	2	4	551	1	0	0	0	0	0	0	0	1	5040	639	23	1		1	EIF4G3	1	21268372	Silent	SNP	C	TCGA-CW-6087-01A-11D-1669-08	798303	21268372	227982249	2	32062											
IL28RA	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24484205	24484205	+	Silent	SNP	T	T	C	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	C	24484205	T	C	24484205	2	2	551	1	0	0	0	0	0	0	0	1	7691	1606	56	3		3	IL28RA	1	24484205	Silent	SNP	T	TCGA-CW-6087-01A-11D-1669-08	3215833	24484205	224766416	3	32063											
EXTL1	2134	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26355761	26355761	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	26355761	T	A	26355761	3	1	551	1	0	0	0	0	1	0	0	0	5327	1783	62	5	863	5	EXTL1	1	26355761	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	1871556	26355761	222894860	4	32064											
FOXJ3	22887	broad.mit.edu;hgsc.bcm.edu	37	1	42730816	42730816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	42730816	T	A	42730816	3	1	551	1	0	0	0	0	1	0	0	0	6020	1606	56	5	1494	5	FOXJ3	1	42730816	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	16375055	42730816	206519805	5	32065											
INADL	10207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62341007	62341007	+	Silent	SNP	T	T	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	62341007	T	A	62341007	2	1	551	1	0	0	0	0	0	0	0	1	7738	1741	61	5		5	INADL	1	62341007	Silent	SNP	T	TCGA-CW-6087-01A-11D-1669-08	19610191	62341007	186909614	6	32066											
CLCA4	22802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	87025997	87025997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	87025997	C	T	87025997	3	4	551	1	0	0	0	0	1	0	0	0	3461	681	24	2	414	2	CLCA4	1	87025997	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08	24684990	87025997	162224624	7	32067											
VWA3B	200403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	98828414	98828414	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	98828414	C	G	98828414	3	3	551	1	0	0	0	0	1	0	0	0	17253	680	24	4	1805	4	VWA3B	2	98828414	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08		98828414	144370959	8	32068											
LRP1B	53353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	141122269	141122269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	141122269	C	T	141122269	3	4	551	1	0	0	0	0	1	0	0	0	8962	884	31	1	2787	1	LRP1B	2	141122269	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08	42293855	141122269	102077104	9	32069											
SCN10A	6336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38783881	38783881	+	Silent	SNP	G	G	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	38783881	G	T	38783881	2	4	551	1	0	0	0	0	0	0	0	1	13925	1277	45	4		4	SCN10A	3	38783881	Silent	SNP	G	TCGA-CW-6087-01A-11D-1669-08		38783881	159238549	10	32070											
ACOX2	8309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	58490979	58490979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	58490979	A	G	58490979	3	3	551	1	0	0	0	0	1	0	0	0	159	72	3	3	31	3	ACOX2	3	58490979	Missense_Mutation	SNP	A	TCGA-CW-6087-01A-11D-1669-08	19707098	58490979	139531451	11	32071											
RFC4	5984	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186508173	186508173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	C	186508173	T	C	186508173	3	2	551	1	0	0	0	0	1	0	0	0	13260	1435	50	3	279	3	RFC4	3	186508173	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	128017194	186508173	11514257	12	32072											
TNK2	10188	broad.mit.edu	37	3	195594610	195594610	+	Silent	SNP	C	T	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	195594610	T	T	195594610	2	4	551	1	0	0	0	0	0	0	0	1	16330	755	27	1		1	TNK2	3	195594610	Silent	SNP	C	TCGA-CW-6087-01A-11D-1669-08	9086437	195594610	2427820	13	32073											
UGT2B10	7365	broad.mit.edu;hgsc.bcm.edu	37	4	69692199	69692199	+	Silent	SNP	C	C	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	69692199	C	T	69692199	2	4	551	1	0	0	0	0	0	0	0	1	16968	610	22	2		2	UGT2B10	4	69692199	Silent	SNP	C	TCGA-CW-6087-01A-11D-1669-08		69692199	121462077	14	32074											
HMGCS1	3157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	43295906	43295906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	43295906	T	A	43295906	3	1	551	1	0	0	0	0	1	0	0	0	7239	1754	61	5	733	5	HMGCS1	5	43295906	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08		43295906	137619354	15	32075											
FTMT	94033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	121187839	121187839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	121187839	C	T	121187839	3	4	551	1	0	0	0	0	1	0	0	0	6092	739	26	2	183	2	FTMT	5	121187839	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08	77891933	121187839	59727421	16	32076											
ZNF608	57507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	124079840	124079840	+	Silent	SNP	C	C	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	124079840	C	T	124079840	2	4	551	1	0	0	0	0	0	0	0	1	18046	593	21	2		2	ZNF608	5	124079840	Silent	SNP	C	TCGA-CW-6087-01A-11D-1669-08	2892001	124079840	56835420	17	32077											
SRA1	10011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139930679	139930679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	139930679	G	T	139930679	3	4	551	1	0	0	0	0	1	0	0	0	15144	1261	44	4	252	4	SRA1	5	139930679	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	15850839	139930679	40984581	18	32078											
PCDHB9	56127	broad.mit.edu	37	5	140568303	140568303	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	140568303	A	A	140568303	3	1	551	1	0	0	0	0	1	0	0	0	11556	1203	42	2	1413	2	PCDHB9	5	140568303	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	637624	140568303	40346957	19	32079											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56501389	56501389	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	56501389	T	A	56501389	3	1	551	1	0	0	0	0	1	0	0	0	4785	1551	54	5	19044	5	DST	6	56501389	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08		56501389	114613678	20	32080											
CASP8AP2	9994	broad.mit.edu	37	6	90573113	90573113	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	90573113	A	A	90573113	4	1	551	1	0	0	0	0	0	1	0	0	2680	1821	63	5	1707	5	CASP8AP2	6	90573113	Nonsense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	34071724	90573113	80541954	21	32081											
POM121L12	285877	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	53103958	53103958	+	Silent	SNP	C	C	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	53103958	C	T	53103958	2	4	551	1	0	0	0	0	0	0	0	1	12248	883	31	1		1	POM121L12	7	53103958	Silent	SNP	C	TCGA-CW-6087-01A-11D-1669-08		53103958	106034705	22	32082											
CUX1	1523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	101925178	101925178	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	101925178	T	G	101925178	3	3	551	1	0	0	0	0	1	0	0	0	4066	1783	62	5	5320	5	CUX1	7	101925178	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	48821220	101925178	57213485	23	32083											
MET	4233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	116415115	116415115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	116415115	T	A	116415115	3	1	551	1	0	0	0	0	1	0	0	0	9492	1696	59	5	3317	5	MET	7	116415115	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	14489937	116415115	42723548	24	32084											
GALNT11	63917	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	151807716	151807716	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	C	151807716	G	C	151807716	3	2	551	1	0	0	0	0	1	0	0	0	6216	1175	41	4	1088	4	GALNT11	7	151807716	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	35392601	151807716	7330947	25	32085											
MSR1	4481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	16032735	16032735	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	16032735	C	G	16032735	3	3	551	1	0	0	0	0	1	0	0	0	9893	536	19	4	1257	4	MSR1	8	16032735	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08		16032735	130331287	26	32086											
PHYHIP	9796	broad.mit.edu;hgsc.bcm.edu	37	8	22084409	22084409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	22084409	A	G	22084409	3	3	551	1	0	0	0	0	1	0	0	0	11873	391	14	3	709	3	PHYHIP	8	22084409	Missense_Mutation	SNP	A	TCGA-CW-6087-01A-11D-1669-08	6051674	22084409	124279613	27	32087											
SGK3	23678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67748020	67748020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	C	67748020	T	C	67748020	3	2	551	1	0	0	0	0	1	0	0	0	14225	1580	55	3	578	3	SGK3	8	67748020	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	45663611	67748020	78616002	28	32088											
PABPC1	26986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	101724674	101724674	+	Silent	SNP	A	A	G	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	101724674	A	G	101724674	2	3	551	1	0	0	0	0	0	0	0	1	11370	1	1	3		3	PABPC1	8	101724674	Silent	SNP	A	TCGA-CW-6087-01A-11D-1669-08	33976654	101724674	44639348	29	32089											
ADCY8	114	broad.mit.edu;hgsc.bcm.edu	37	8	131880119	131880119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	131880119	G	T	131880119	3	4	551	1	0	0	0	0	1	0	0	0	300	1319	46	4	1612	4	ADCY8	8	131880119	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	30155445	131880119	14483903	30	32090											
PRKACG	5568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	71628711	71628711	+	Missense_Mutation	SNP	C	C	T	rs138606760		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	71628711	C	T	71628711	3	4	551	1	0	0	0	0	1	0	0	0	12509	884	31	1	761	1	PRKACG	9	71628711	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08		71628711	69584720	31	32091											
AGTPBP1	23287	broad.mit.edu;hgsc.bcm.edu	37	9	88193989	88193989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	C	88193989	T	C	88193989	3	2	551	1	0	0	0	0	1	0	0	0	400	1464	51	3	504	3	AGTPBP1	9	88193989	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	16565278	88193989	53019442	32	32092											
CRAT	1384	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131864768	131864768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	131864768	G	A	131864768	4	1	551	1	0	0	0	0	0	1	0	0	3849	1124	39	1	1379	1	CRAT	9	131864768	Nonsense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	43670779	131864768	9348663	33	32093											
ANKRD30A	91074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	37508065	37508065	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	37508065	A	T	37508065	3	4	551	1	0	0	0	0	1	0	0	0	658	72	3	5	3391	5	ANKRD30A	10	37508065	Missense_Mutation	SNP	A	TCGA-CW-6087-01A-11D-1669-08		37508065	98026682	34	32094											
POLL	27343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	103345853	103345853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	103345853	T	A	103345853	3	1	551	1	0	0	0	0	1	0	0	0	12212	1783	62	5	1579	5	POLL	10	103345853	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	65837788	103345853	32188894	35	32095											
ESRRA	2101	broad.mit.edu;hgsc.bcm.edu	37	11	64082235	64082235	+	Silent	SNP	G	G	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	64082235	G	A	64082235	2	1	551	1	0	0	0	0	0	0	0	1	5262	1364	48	2		2	ESRRA	11	64082235	Silent	SNP	G	TCGA-CW-6087-01A-11D-1669-08		64082235	70924281	36	32096											
CPT1A	1374	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	68575043	68575043	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	68575043	C	T	68575043	4	4	551	1	0	0	0	0	0	1	0	0	3833	624	22	2	2080	2	CPT1A	11	68575043	Nonsense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08	4492808	68575043	66431473	37	32097											
NARS2	79731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	78176959	78176959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	C	78176959	A	C	78176959	3	2	551	1	0	0	0	0	1	0	0	0	10178	246	9	5	322	5	NARS2	11	78176959	Missense_Mutation	SNP	A	TCGA-CW-6087-01A-11D-1669-08	9601916	78176959	56829557	38	32098											
FARP1	10160	broad.mit.edu	37	13	99083408	99083408	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	99083408	T	T	99083408	3	4	551	1	0	0	0	0	1	0	0	0	5683	1261	44	4	2306	4	FARP1	13	99083408	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08		99083408	16086470	39	32099											
SAV1	60485	broad.mit.edu	37	14	51131954	51131954	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	51131954	A	A	51131954	4	1	551	1	0	0	0	0	0	1	0	0	13869	835	29	4	689	4	SAV1	14	51131954	Nonsense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08		51131954	56217586	40	32100											
AHSA1	10598	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	77929008	77929008	+	Silent	SNP	T	T	C	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	C	77929008	T	C	77929008	2	2	551	1	0	0	0	0	0	0	0	1	418	1461	51	3		3	AHSA1	14	77929008	Silent	SNP	T	TCGA-CW-6087-01A-11D-1669-08	26797054	77929008	29420532	41	32101											
MESP1	55897	broad.mit.edu;hgsc.bcm.edu	37	15	90293454	90293454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	90293454	A	T	90293454	3	4	551	1	0	0	0	0	1	0	0	0	9489	72	3	5	82	5	MESP1	15	90293454	Missense_Mutation	SNP	A	TCGA-CW-6087-01A-11D-1669-08		90293454	12237938	42	32102											
ZNF624	57547	hgsc.bcm.edu;ucsc.edu	37	17	16527779	16527779	+	Missense_Mutation	SNP	C	C	G	rs142158380	bycluster;byfrequency;by1000genomes	TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	16527779	C	G	16527779	3	3	551	1	0	0	0	0	1	0	0	0	18060	739	26	4	2180	4	ZNF624	17	16527779	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08		16527779	64667431	43	32103											
TOB1	10140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48940954	48940954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	48940954	A	G	48940954	3	3	551	1	0	0	0	0	1	0	0	0	16359	449	16	3	616	3	TOB1	17	48940954	Missense_Mutation	SNP	A	TCGA-CW-6087-01A-11D-1669-08	32413175	48940954	32254256	44	32104											
MGAT5B	146664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74936814	74936814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	74936814	G	A	74936814	3	1	551	1	0	0	0	0	1	0	0	0	9556	1275	44	2	1881	2	MGAT5B	17	74936814	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	25995860	74936814	6258396	45	32105											
WDR7	23335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	54424323	54424323	+	Silent	SNP	A	A	G	rs145083205		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	54424323	A	G	54424323	2	3	551	1	0	0	0	0	0	0	0	1	17332	436	16	3		3	WDR7	18	54424323	Silent	SNP	A	TCGA-CW-6087-01A-11D-1669-08		54424323	23652925	46	32106											
TSHZ1	10194	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	72998494	72998494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	72998494	G	A	72998494	3	1	551	1	0	0	0	0	1	0	0	0	16635	1291	45	2	999	2	TSHZ1	18	72998494	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	18574171	72998494	5078754	47	32107											
TCF3	6929	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1612391	1612391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	1612391	C	A	1612391	3	1	551	1	0	0	0	0	1	0	0	0	15706	681	24	4	335	4	TCF3	19	1612391	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08		1612391	57516592	48	32108											
UPF1	5976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18960913	18960913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	18960913	A	G	18960913	3	3	551	1	0	0	0	0	1	0	0	0	17015	14	1	3	505	3	UPF1	19	18960913	Missense_Mutation	SNP	A	TCGA-CW-6087-01A-11D-1669-08	17348522	18960913	40168070	49	32109											
SIPA1L3	23094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38591731	38591731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	38591731	G	A	38591731	3	1	551	1	0	0	0	0	1	0	0	0	14344	1203	42	2	1908	2	SIPA1L3	19	38591731	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	19630818	38591731	20537252	50	32110											
ZNF285	26974	hgsc.bcm.edu	37	19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T	rs77661661		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	44891043	G	T	44891043	3	4	551	1	0	0	0	0	1	0	0	0	17834	1348	47	4	412	4	ZNF285	19	44891043	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	6299312	44891043	14237940	51	32111											
PCSK2	5126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	17434533	17434533	+	Silent	SNP	C	C	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	17434533	C	T	17434533	2	4	551	1	0	0	0	0	0	0	0	1	11608	535	19	1		1	PCSK2	20	17434533	Silent	SNP	C	TCGA-CW-6087-01A-11D-1669-08		17434533	45590987	52	32112											
SGK2	10110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	42199332	42199332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	C	42199332	G	C	42199332	3	2	551	1	0	0	0	0	1	0	0	0	14222	1087	38	4	638	4	SGK2	20	42199332	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	24764799	42199332	20826188	53	32113											
PLTP	5360	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44538612	44538612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	44538612	G	T	44538612	3	4	551	1	0	0	0	0	1	0	0	0	12121	1087	38	4	1235	4	PLTP	20	44538612	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	2339280	44538612	18486908	54	32114											
PREX1	57580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47292733	47292733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	T	47292733	G	T	47292733	3	4	551	1	0	0	0	0	1	0	0	0	12486	1299	45	4	3424	4	PREX1	20	47292733	Missense_Mutation	SNP	G	TCGA-CW-6087-01A-11D-1669-08	2754121	47292733	15732787	55	32115											
KCNJ15	3772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	39671492	39671492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	G	39671492	T	G	39671492	3	3	551	1	0	0	0	0	1	0	0	0	8056	1432	50	5	311	5	KCNJ15	21	39671492	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08		39671492	8458403	56	32116											
GAL3ST1	9514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30951966	30951966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	30951966	C	A	30951966	3	1	551	1	0	0	0	0	1	0	0	0	6204	912	32	4	1029	4	GAL3ST1	22	30951966	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08		30951966	20352600	57	32117											
PCDH19	57526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	99662750	99662750	+	Silent	SNP	G	G	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	99662750	G	A	99662750	2	1	551	1	0	0	0	0	0	0	0	1	11521	1136	40	1		1	PCDH19	23	99662750	Silent	SNP	G	TCGA-CW-6087-01A-11D-1669-08		99662750	55607810	58	32118											
HAUS7	55559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	152719888	152719888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	C	152719888	T	C	152719888	3	2	551	1	0	0	0	0	1	0	0	0	6978	1435	50	3	75	3	HAUS7	23	152719888	Missense_Mutation	SNP	T	TCGA-CW-6087-01A-11D-1669-08	53057138	152719888	2550672	59	32119											
PNCK	139728	broad.mit.edu	37	X	152936765	152936765	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CW-6087-01A-11D-1669-08	TCGA-CW-6087-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65c23a97-1763-47d5-8648-df24cf0226f3	8085a4ca-eaa6-417b-84d8-d5fa912dcdc3	A	152936765	A	A	152936765	3	1	551	1	0	0	0	0	1	0	0	0	12152	739	26	4	462	4	PNCK	23	152936765	Missense_Mutation	SNP	C	TCGA-CW-6087-01A-11D-1669-08	216877	152936765	2333795	60	32120											
RCC2	55920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	17748729	17748729	+	Silent	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	17748729	G	A	17748729	2	1	552	1	0	0	0	0	0	0	0	1	13187	1252	44	2		2	RCC2	1	17748729	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08		17748729	231501892	1	32121											
PTPRU	10076	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	29585159	29585159	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	29585159	C	T	29585159	2	4	552	1	0	0	0	0	0	0	0	1	12826	610	22	2		2	PTPRU	1	29585159	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	11836430	29585159	219665462	2	32122											
GJB3	2707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35250435	35250435	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	35250435	G	A	35250435	4	1	552	1	0	0	0	0	0	1	0	0	6416	1212	42	2	74	2	GJB3	1	35250435	Nonsense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	5665276	35250435	214000186	3	32123											
EIF2C4	192670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36319144	36319144	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	36319144	C	T	36319144	4	4	552	1	0	0	0	0	0	1	0	0	5010	827	29	2	2594	2	EIF2C4	1	36319144	Nonsense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	1068709	36319144	212931477	4	32124											
CYP4A11	1579	broad.mit.edu	37	1	47401310	47401310	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	47401310	T	T	47401310	3	4	552	1	0	0	0	0	1	0	0	0	4185	864	30	2	1071	2	CYP4A11	1	47401310	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	11082166	47401310	201849311	5	32125											
CLCA4	22802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	87031612	87031612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	87031612	T	C	87031612	3	2	552	1	0	0	0	0	1	0	0	0	3461	1464	51	3	885	3	CLCA4	1	87031612	Missense_Mutation	SNP	T	TCGA-CW-6090-01A-11D-1669-08	39630302	87031612	162219009	6	32126											
LMO4	8543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	87805280	87805280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	87805280	G	A	87805280	3	1	552	1	0	0	0	0	1	0	0	0	8861	1145	40	1	304	1	LMO4	1	87805280	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	773668	87805280	161445341	7	32127											
OAZ3	51686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151740639	151740639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	151740639	G	T	151740639	3	4	552	1	0	0	0	0	1	0	0	0	10813	1116	39	4	456	4	OAZ3	1	151740639	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	63935359	151740639	97509982	8	32128											
LCE1B	353132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152785104	152785104	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	152785104	G	C	152785104	3	2	552	1	0	0	0	0	1	0	0	0	8667	1203	42	4	184	4	LCE1B	1	152785104	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	1044465	152785104	96465517	9	32129											
OR10T2	128360	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158368416	158368416	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	158368416	C	G	158368416	3	3	552	1	0	0	0	0	1	0	0	0	10926	507	18	4	105	4	OR10T2	1	158368416	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	5583312	158368416	90882205	10	32130											
F13B	2165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197024881	197024881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	197024881	C	T	197024881	3	4	552	1	0	0	0	0	1	0	0	0	5343	893	31	1	687	1	F13B	1	197024881	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	38656465	197024881	52225740	11	32131											
USH2A	7399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	215990344	215990344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	215990344	C	T	215990344	3	4	552	1	0	0	0	0	1	0	0	0	17048	797	28	2	6143	2	USH2A	1	215990344	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	18965463	215990344	33260277	12	32132											
RSAD2	91543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	7023569	7023569	+	Silent	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	7023569	G	A	7023569	2	1	552	1	0	0	0	0	0	0	0	1	13708	1020	36	2		2	RSAD2	2	7023569	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08		7023569	236175804	13	32133											
PLB1	151056	hgsc.bcm.edu;ucsc.edu	37	2	28752187	28752187	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	-	28752187	T	-	28752187	7	5	552	1	0	1	0	1	0	0	0	0	12031	1609	56	0	355	0	PLB1	2	28752187	Frame_Shift_Del	DEL	T	TCGA-CW-6090-01A-11D-1669-08	21728618	28752187	214447186	14	32134											
NAGK	55577	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	71299849	71299849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	71299849	G	C	71299849	3	2	552	1	0	0	0	0	1	0	0	0	10149	1203	42	4	590	4	NAGK	2	71299849	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	42547662	71299849	171899524	15	32135											
C2orf29	55571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	101883240	101883240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	101883240	A	G	101883240	3	3	552	1	0	0	0	0	1	0	0	0	2163	410	15	3	1155	3	C2orf29	2	101883240	Missense_Mutation	SNP	A	TCGA-CW-6090-01A-11D-1669-08	30583391	101883240	141316133	16	32136											
NPHP1	4867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	110922222	110922222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	110922222	G	T	110922222	3	4	552	1	0	0	0	0	1	0	0	0	10586	991	35	4	1439	4	NPHP1	2	110922222	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	9038982	110922222	132277151	17	32137											
ACVR1	90	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	158595006	158595006	+	Silent	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	158595006	T	C	158595006	2	2	552	1	0	0	0	0	0	0	0	1	220	1509	53	3		3	ACVR1	2	158595006	Silent	SNP	T	TCGA-CW-6090-01A-11D-1669-08	47672784	158595006	84604367	18	32138											
SETD5	55209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9495474	9495474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	9495474	C	A	9495474	3	1	552	1	0	0	0	0	1	0	0	0	14147	507	18	4	2456	4	SETD5	3	9495474	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08		9495474	188526956	19	32139											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191540	10191541	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	10191541	-	G	10191540	7	5	552	1	0	1	1	0	0	0	0	0	17174	1580	55	0	543	0	VHL	3	10191540	Frame_Shift_Ins	INS	-	TCGA-CW-6090-01A-11D-1669-08	696066	10191540	187830890	20	32140											
ZMYND10	51364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	50380356	50380356	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	50380356	C	T	50380356	2	4	552	1	0	0	0	0	0	0	0	1	17717	610	22	2		2	ZMYND10	3	50380356	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	40188816	50380356	147642074	21	32141											
POPDC2	64091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	119367299	119367299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	119367299	G	A	119367299	3	1	552	1	0	0	0	0	1	0	0	0	12262	1174	41	2	285	2	POPDC2	3	119367299	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	68986943	119367299	78655131	22	32142											
CP	1356	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	148928072	148928072	+	Silent	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	148928072	T	C	148928072	2	2	552	1	0	0	0	0	0	0	0	1	3789	1606	56	3		3	CP	3	148928072	Silent	SNP	T	TCGA-CW-6090-01A-11D-1669-08	29560773	148928072	49094358	23	32143											
QDPR	5860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	17506031	17506031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	17506031	C	T	17506031	3	4	552	1	0	0	0	0	1	0	0	0	12885	855	30	2	488	2	QDPR	4	17506031	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08		17506031	173648245	24	32144											
SEL1L3	23231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	25834685	25834685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	25834685	C	T	25834685	3	4	552	1	0	0	0	0	1	0	0	0	14025	478	17	2	2448	2	SEL1L3	4	25834685	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	8328654	25834685	165319591	25	32145											
RASGEF1B	153020	hgsc.bcm.edu	37	4	82366985	82366985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	82366985	T	C	82366985	3	2	552	1	0	0	0	0	1	0	0	0	13083	1638	57	3	716	3	RASGEF1B	4	82366985	Missense_Mutation	SNP	T	TCGA-CW-6090-01A-11D-1669-08	56532300	82366985	108787291	26	32146											
LARP1B	55132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	129012653	129012653	+	Silent	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	129012653	T	C	129012653	2	2	552	1	0	0	0	0	0	0	0	1	8636	1413	49	3		3	LARP1B	4	129012653	Silent	SNP	T	TCGA-CW-6090-01A-11D-1669-08	46645668	129012653	62141623	27	32147											
KIAA0922	23240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	154504367	154504367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	154504367	A	G	154504367	3	3	552	1	0	0	0	0	1	0	0	0	8208	439	16	3	956	3	KIAA0922	4	154504367	Missense_Mutation	SNP	A	TCGA-CW-6090-01A-11D-1669-08	25491714	154504367	36649909	28	32148											
ANXA10	11199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	169100409	169100409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	169100409	G	T	169100409	3	4	552	1	0	0	0	0	1	0	0	0	715	942	33	4	704	4	ANXA10	4	169100409	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	14596042	169100409	22053867	29	32149											
SLC6A3	6531	hgsc.bcm.edu;ucsc.edu	37	5	1443043	1443044	+	Frame_Shift_Ins	INS	-	-	CACA	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	CACA	1443044	-	CACA	1443043	7	5	552	1	0	1	1	0	0	0	0	0	14698	963	34	0	1648	0	SLC6A3	5	1443043	Frame_Shift_Ins	INS	-	TCGA-CW-6090-01A-11D-1669-08		1443043	179472217	30	32150											
MAP1B	4131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	71494891	71494891	+	Silent	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	71494891	C	A	71494891	2	1	552	1	0	0	0	0	0	0	0	1	9235	784	28	4		4	MAP1B	5	71494891	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	70051848	71494891	109420369	31	32151											
MCC	4163	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	112437520	112437520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	112437520	C	T	112437520	3	4	552	1	0	0	0	0	1	0	0	0	9380	710	25	2	1793	2	MCC	5	112437520	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	40942629	112437520	68477740	32	32152											
PPP2R2B	5521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	145969638	145969638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	145969638	C	A	145969638	3	1	552	1	0	0	0	0	1	0	0	0	12395	913	32	4	131	4	PPP2R2B	5	145969638	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	33532118	145969638	34945622	33	32153											
ABLIM3	22885	broad.mit.edu;hgsc.bcm.edu	37	5	148590289	148590289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	148590289	G	T	148590289	3	4	552	1	0	0	0	0	1	0	0	0	96	1246	43	4	598	4	ABLIM3	5	148590289	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	2620651	148590289	32324971	34	32154											
BTNL3	10917	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	180424374	180424374	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	180424374	A	C	180424374	3	2	552	1	0	0	0	0	1	0	0	0	1568	188	7	5	569	5	BTNL3	5	180424374	Missense_Mutation	SNP	A	TCGA-CW-6090-01A-11D-1669-08	31834085	180424374	490886	35	32155											
RREB1	6239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7229380	7229380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	7229380	G	A	7229380	3	1	552	1	0	0	0	0	1	0	0	0	13692	1203	42	2	1074	2	RREB1	6	7229380	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08		7229380	163885687	36	32156											
GCNT2	2651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	10586869	10586869	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	-	10586869	C	-	10586869	7	5	552	1	0	1	0	1	0	0	0	0	6308	507	18	0	2501	0	GCNT2	6	10586869	Frame_Shift_Del	DEL	C	TCGA-CW-6090-01A-11D-1669-08	3357489	10586869	160528198	37	32157											
SOX4	6659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	21594792	21594792	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	21594792	G	C	21594792	3	2	552	1	0	0	0	0	1	0	0	0	14966	933	33	4	29	4	SOX4	6	21594792	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	11007923	21594792	149520275	38	32158											
TDRD6	221400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46660119	46660119	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	46660119	C	T	46660119	2	4	552	1	0	0	0	0	0	0	0	1	15746	805	28	2		2	TDRD6	6	46660119	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	25065327	46660119	124454948	39	32159											
GPR116	221395	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46830726	46830726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	46830726	T	G	46830726	3	3	552	1	0	0	0	0	1	0	0	0	6640	1464	51	5	1970	5	GPR116	6	46830726	Missense_Mutation	SNP	T	TCGA-CW-6090-01A-11D-1669-08	170607	46830726	124284341	40	32160											
PRDM1	639	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	106553602	106553602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	106553602	G	A	106553602	3	1	552	1	0	0	0	0	1	0	0	0	12460	1087	38	1	1598	1	PRDM1	6	106553602	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	59722876	106553602	64561465	41	32161											
TNRC18	84629	broad.mit.edu;ucsc.edu	37	7	5391571	5391571	+	Silent	SNP	C	T	T	rs186010377	by1000genomes	TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	5391571	T	T	5391571	2	4	552	1	0	0	0	0	0	0	0	1	16351	639	23	1		1	TNRC18	7	5391571	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08		5391571	153747092	42	32162											
SP8	221833	broad.mit.edu	37	7	20824858	20824858	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	-	20824858	-	-	20824858	7	5	552	1	0	1	0	1	0	0	0	0	14983	333	12	0	952	0	SP8	7	20824858	Frame_Shift_Del	DEL	A	TCGA-CW-6090-01A-11D-1669-08	15433287	20824858	138313805	43	32163											
BBS9	27241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	33376135	33376135	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	33376135	C	G	33376135	3	3	552	1	0	0	0	0	1	0	0	0	1342	595	21	4	1133	4	BBS9	7	33376135	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	12551277	33376135	125762528	44	32164											
AKR1B1	231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134134487	134134487	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	-	134134487	A	-	134134487	7	5	552	1	0	1	0	1	0	0	0	0	466	242	9	0	564	0	AKR1B1	7	134134487	Frame_Shift_Del	DEL	A	TCGA-CW-6090-01A-11D-1669-08	100758352	134134487	25004176	45	32165											
FGFR1	2260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38272389	38272389	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	38272389	C	G	38272389	3	3	552	1	0	0	0	0	1	0	0	0	5870	478	17	4	603	4	FGFR1	8	38272389	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08		38272389	108091633	46	32166											
RP1	6101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	55542521	55542521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	55542521	G	A	55542521	3	1	552	1	0	0	0	0	1	0	0	0	13545	942	33	2	6089	2	RP1	8	55542521	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	17270132	55542521	90821501	47	32167											
CNGB3	54714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	87591035	87591035	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	87591035	A	T	87591035	3	4	552	1	0	0	0	0	1	0	0	0	3603	72	3	5	452	5	CNGB3	8	87591035	Missense_Mutation	SNP	A	TCGA-CW-6090-01A-11D-1669-08	32048514	87591035	58772987	48	32168											
GPT	2875	hgsc.bcm.edu	37	8	145732305	145732306	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	145732306	-	C	145732305	7	5	552	1	0	1	1	0	0	0	0	0	6744	1306	46	0	1455	0	GPT	8	145732305	Frame_Shift_Ins	INS	-	TCGA-CW-6090-01A-11D-1669-08	58141270	145732305	631717	49	32169											
VLDLR	7436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	2652826	2652826	+	Missense_Mutation	SNP	T	T	A	rs140801553	by1000genomes;alternate_allele	TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	2652826	T	A	2652826	3	1	552	1	0	0	0	0	1	0	0	0	17186	1490	52	5	2533	5	VLDLR	9	2652826	Missense_Mutation	SNP	T	TCGA-CW-6090-01A-11D-1669-08		2652826	138560605	50	32170											
DNAJC25-GNG10	552891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	114429212	114429212	+	Silent	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	114429212	T	C	114429212	2	2	552	1	0	0	0	0	0	0	0	1	4646	1838	64	3		3	DNAJC25-GNG10	9	114429212	Silent	SNP	T	TCGA-CW-6090-01A-11D-1669-08	111776386	114429212	26784219	51	32171											
SCAI	286205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	127733961	127733961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	127733961	G	A	127733961	3	1	552	1	0	0	0	0	1	0	0	0	13882	1294	45	2	270	2	SCAI	9	127733961	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	13304749	127733961	13479470	52	32172											
SPTAN1	6709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131331096	131331096	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	131331096	A	T	131331096	3	4	552	1	0	0	0	0	1	0	0	0	15129	130	5	5	289	5	SPTAN1	9	131331096	Missense_Mutation	SNP	A	TCGA-CW-6090-01A-11D-1669-08	3597135	131331096	9882335	53	32173											
NTNG2	84628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	135102354	135102354	+	Silent	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	135102354	C	A	135102354	2	1	552	1	0	0	0	0	0	0	0	1	10712	643	23	4		4	NTNG2	9	135102354	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	3771258	135102354	6111077	54	32174											
KIAA1462	57608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	30316647	30316647	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	30316647	G	C	30316647	3	2	552	1	0	0	0	0	1	0	0	0	8241	1311	46	4	1657	4	KIAA1462	10	30316647	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08		30316647	105218100	55	32175											
C10orf137	26098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	127442319	127442319	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	127442319	A	C	127442319	3	2	552	1	0	0	0	0	1	0	0	0	1596	69	3	5	3438	5	C10orf137	10	127442319	Missense_Mutation	SNP	A	TCGA-CW-6090-01A-11D-1669-08	97125672	127442319	8092428	56	32176											
C11orf17	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	8940960	8940960	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	8940960	T	G	8940960	4	3	552	1	0	0	0	0	0	1	0	0	1634	1764	61	5	584	5	C11orf17	11	8940960	Nonsense_Mutation	SNP	T	TCGA-CW-6090-01A-11D-1669-08		8940960	126065556	57	32177											
SLC17A6	57084	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	22397594	22397594	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	22397594	C	A	22397594	4	1	552	1	0	0	0	0	0	1	0	0	14434	838	29	4	1279	4	SLC17A6	11	22397594	Nonsense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	13456634	22397594	112608922	58	32178											
MAPK8IP1	9479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	45925699	45925699	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	45925699	C	T	45925699	2	4	552	1	0	0	0	0	0	0	0	1	9291	639	23	1		1	MAPK8IP1	11	45925699	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	23528105	45925699	89080817	59	32179											
TMX2	51075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57505890	57505890	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	-	57505890	T	-	57505890	7	5	552	1	0	1	0	1	0	0	0	0	16279	1403	49	0	443	0	TMX2	11	57505890	Frame_Shift_Del	DEL	T	TCGA-CW-6090-01A-11D-1669-08	11580191	57505890	77500626	60	32180											
MS4A14	84689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60183976	60183976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	60183976	C	A	60183976	3	1	552	1	0	0	0	0	1	0	0	0	9865	855	30	4	1553	4	MS4A14	11	60183976	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	2678086	60183976	74822540	61	32181											
C11orf9	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61539075	61539075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	61539075	G	A	61539075	3	1	552	1	0	0	0	0	1	0	0	0	1673	1145	40	1	889	1	C11orf9	11	61539075	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	1355099	61539075	73467441	62	32182											
CLPB	81570	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	72005414	72005414	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	72005414	C	T	72005414	2	4	552	1	0	0	0	0	0	0	0	1	3553	796	28	2		2	CLPB	11	72005414	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	10466339	72005414	63001102	63	32183											
MTNR1B	4544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92702959	92702959	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	92702959	C	A	92702959	4	1	552	1	0	0	0	0	0	1	0	0	9959	893	31	4	70	4	MTNR1B	11	92702959	Nonsense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	20697545	92702959	42303557	64	32184											
PHB2	11331	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7079388	7079388	+	Silent	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	7079388	G	A	7079388	2	1	552	1	0	0	0	0	0	0	0	1	11822	1368	48	2		2	PHB2	12	7079388	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08		7079388	126772507	65	32185											
M6PR	4074	hgsc.bcm.edu	37	12	9098995	9098996	+	In_Frame_Ins	INS	-	-	AAC	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	AAC	9098996	-	AAC	9098995	7	5	552	1	0	1	1	0	0	0	0	0	9147	1165	41	0	851	0	M6PR	12	9098995	In_Frame_Ins	INS	-	TCGA-CW-6090-01A-11D-1669-08	2019607	9098995	124752900	66	32186											
ARHGDIB	397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	15103538	15103538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	15103538	C	T	15103538	3	4	552	1	0	0	0	0	1	0	0	0	891	864	30	2	516	2	ARHGDIB	12	15103538	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	6004543	15103538	118748357	67	32187											
SLC38A2	54407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	46760917	46760917	+	Silent	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	46760917	T	C	46760917	2	2	552	1	0	0	0	0	0	0	0	1	14617	1451	51	3		3	SLC38A2	12	46760917	Silent	SNP	T	TCGA-CW-6090-01A-11D-1669-08	31657379	46760917	87090978	68	32188											
PIP4K2C	79837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57995122	57995122	+	Silent	SNP	C	C	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	57995122	C	G	57995122	2	3	552	1	0	0	0	0	0	0	0	1	11945	813	29	4		4	PIP4K2C	12	57995122	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	11234205	57995122	75856773	69	32189											
THAP2	83591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	72068028	72068028	+	Silent	SNP	T	T	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	72068028	T	G	72068028	2	3	552	1	0	0	0	0	0	0	0	1	15856	1741	61	5		5	THAP2	12	72068028	Silent	SNP	T	TCGA-CW-6090-01A-11D-1669-08	14072906	72068028	61783867	70	32190											
TMTC3	160418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	88588684	88588684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	88588684	C	G	88588684	3	3	552	1	0	0	0	0	1	0	0	0	16274	797	28	4	2053	4	TMTC3	12	88588684	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	16520656	88588684	45263211	71	32191											
EID3	493861	hgsc.bcm.edu;ucsc.edu	37	12	104698324	104698325	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	104698325	-	T	104698324	7	5	552	1	0	1	1	0	0	0	0	0	4991	1020	36	0	614	0	EID3	12	104698324	Frame_Shift_Ins	INS	-	TCGA-CW-6090-01A-11D-1669-08	16109640	104698324	29153571	72	32192											
PITPNM2	57605	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123497230	123497232	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	ATA	ATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	-	123497232	ATA	-	123497230	7	5	552	1	0	1	0	1	0	0	0	0	11958	456	16	0	3792	0	PITPNM2	12	123497230	In_Frame_Del	DEL	ATA	TCGA-CW-6090-01A-11D-1669-08	18798906	123497230	10354665	73	32193											
NCOR2	9612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124839984	124839984	+	Silent	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	124839984	G	A	124839984	2	1	552	1	0	0	0	0	0	0	0	1	10243	932	33	2		2	NCOR2	12	124839984	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08	1342754	124839984	9011911	74	32194											
SLITRK5	26050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	88329649	88329649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	88329649	G	A	88329649	3	1	552	1	0	0	0	0	1	0	0	0	14759	971	34	2	2008	2	SLITRK5	13	88329649	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08		88329649	26840229	75	32195											
MYO16	23026	broad.mit.edu;ucsc.edu	37	13	109779862	109779862	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	109779862	A	A	109779862	3	1	552	1	0	0	0	0	1	0	0	0	10071	1087	38	1	4067	1	MYO16	13	109779862	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	21450213	109779862	5390016	76	32196											
GPHN	10243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	67147886	67147886	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	67147886	C	T	67147886	2	4	552	1	0	0	0	0	0	0	0	1	6617	871	31	1		1	GPHN	14	67147886	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08		67147886	40201654	77	32197											
PTGR2	145482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74327307	74327307	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	-	74327307	A	-	74327307	7	5	552	1	0	1	0	1	0	0	0	0	12765	362	13	0	109	0	PTGR2	14	74327307	Frame_Shift_Del	DEL	A	TCGA-CW-6090-01A-11D-1669-08	7179421	74327307	33022233	78	32198											
SNRPN	6638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	25220568	25220568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	25220568	G	T	25220568	3	4	552	1	0	0	0	0	1	0	0	0	14883	942	33	4	73	4	SNRPN	15	25220568	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08		25220568	77310824	79	32199											
COPS2	9318	broad.mit.edu	37	15	49423011	49423011	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	49423011	T	T	49423011	3	4	552	1	0	0	0	0	1	0	0	0	3735	1203	42	4	397	4	COPS2	15	49423011	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	24202443	49423011	53108381	80	32200											
MYO5C	55930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52571772	52571772	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	52571772	C	A	52571772	4	1	552	1	0	0	0	0	0	1	0	0	10087	893	31	4	5146	4	MYO5C	15	52571772	Nonsense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	3148761	52571772	49959620	81	32201											
CILP	8483	broad.mit.edu;hgsc.bcm.edu	37	15	65499201	65499201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	65499201	C	T	65499201	3	4	552	1	0	0	0	0	1	0	0	0	3431	835	29	2	3235	2	CILP	15	65499201	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	12927429	65499201	37032191	82	32202											
FAM108C1	58489	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	81046666	81046666	+	Silent	SNP	A	A	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	81046666	A	G	81046666	2	3	552	1	0	0	0	0	0	0	0	1	5397	407	15	3		3	FAM108C1	15	81046666	Silent	SNP	A	TCGA-CW-6090-01A-11D-1669-08	15547465	81046666	21484726	83	32203											
DET1	55070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89056233	89056233	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	89056233	C	T	89056233	2	4	552	1	0	0	0	0	0	0	0	1	4452	854	30	2		2	DET1	15	89056233	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	8009567	89056233	13475159	84	32204											
RHCG	51458	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90022631	90022631	+	Silent	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	90022631	G	A	90022631	2	1	552	1	0	0	0	0	0	0	0	1	13339	987	35	2		2	RHCG	15	90022631	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08	966398	90022631	12508761	85	32205											
SPSB3	90864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1827748	1827748	+	Missense_Mutation	SNP	C	C	G	rs147512809	alternate_allele	TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	1827748	C	G	1827748	3	3	552	1	0	0	0	0	1	0	0	0	15126	695	24	4	354	4	SPSB3	16	1827748	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08		1827748	88527005	86	32206											
CIITA	4261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	10997656	10997656	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	10997656	C	G	10997656	3	3	552	1	0	0	0	0	1	0	0	0	3430	855	30	4	875	4	CIITA	16	10997656	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	9169908	10997656	79357097	87	32207											
CIRH1A	84916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69199288	69199288	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	69199288	C	T	69199288	2	4	552	1	0	0	0	0	0	0	0	1	3436	738	26	2		2	CIRH1A	16	69199288	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	58201632	69199288	21155465	88	32208											
GCSH	2653	broad.mit.edu;hgsc.bcm.edu	37	16	81118200	81118200	+	Splice_Site	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	81118200	C	A	81118200	5	1	552	1	0	0	0	0	0	0	1	0	6312	927	32	4	237	4	GCSH	16	81118200	Splice_Site	SNP	C	TCGA-CW-6090-01A-11D-1669-08	11918912	81118200	9236553	89	32209											
ZC3H18	124245	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	88694152	88694152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	88694152	C	T	88694152	3	4	552	1	0	0	0	0	1	0	0	0	17580	913	32	2	2281	2	ZC3H18	16	88694152	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	7575952	88694152	1660601	90	32210											
ZNF276	92822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	89804478	89804478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	89804478	G	C	89804478	3	2	552	1	0	0	0	0	1	0	0	0	17823	1290	45	4	1711	4	ZNF276	16	89804478	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	1110326	89804478	550275	91	32211											
PRPF8	10594	hgsc.bcm.edu;ucsc.edu	37	17	1559850	1559855	+	In_Frame_Del	DEL	GTAAGT	GTAAGT	-	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	GTAAGT	GTAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	-	1559855	GTAAGT	-	1559850	7	5	552	1	0	1	0	1	0	0	0	0	12585	1020	36	0	1410	0	PRPF8	17	1559850	In_Frame_Del	DEL	GTAAGT	TCGA-CW-6090-01A-11D-1669-08		1559850	79635360	92	32212											
PAFAH1B1	5048	hgsc.bcm.edu	37	17	2577360	2577360	+	Silent	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	2577360	T	C	2577360	2	2	552	1	0	0	0	0	0	0	0	1	11391	1702	59	3		3	PAFAH1B1	17	2577360	Silent	SNP	T	TCGA-CW-6090-01A-11D-1669-08	1017510	2577360	78617850	93	32213											
ITGAE	3682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3657179	3657179	+	Silent	SNP	G	G	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	3657179	G	C	3657179	2	2	552	1	0	0	0	0	0	0	0	1	7892	987	35	4		4	ITGAE	17	3657179	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08	1079819	3657179	77538031	94	32214											
KIAA0100	9703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26965110	26965110	+	Silent	SNP	A	A	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	26965110	A	G	26965110	2	3	552	1	0	0	0	0	0	0	0	1	8161	378	14	3		3	KIAA0100	17	26965110	Silent	SNP	A	TCGA-CW-6090-01A-11D-1669-08	23307931	26965110	54230100	95	32215											
SRCIN1	80725	broad.mit.edu	37	17	36717995	36717996	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	36717996	A	A	36717995	7	5	552	1	0	1	1	0	0	0	0	0	15148	1165	41	0	2199	0	SRCIN1	17	36717995	Frame_Shift_Ins	INS	-	TCGA-CW-6090-01A-11D-1669-08	9752885	36717995	44477215	96	32216											
ST6GALNAC1	55808	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	74625522	74625522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	74625522	T	C	74625522	3	2	552	1	0	0	0	0	1	0	0	0	15235	1783	62	3	1431	3	ST6GALNAC1	17	74625522	Missense_Mutation	SNP	T	TCGA-CW-6090-01A-11D-1669-08	37907527	74625522	6569688	97	32217											
SLC26A11	284129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78215586	78215586	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	78215586	C	T	78215586	2	4	552	1	0	0	0	0	0	0	0	1	14529	518	18	2		2	SLC26A11	17	78215586	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	3590064	78215586	2979624	98	32218											
COLEC12	81035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	346953	346953	+	Silent	SNP	C	C	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	346953	C	A	346953	2	1	552	1	0	0	0	0	0	0	0	1	3714	697	25	4		4	COLEC12	18	346953	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08		346953	77730295	99	32219											
HRH4	59340	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	22056745	22056745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	22056745	A	G	22056745	3	3	552	1	0	0	0	0	1	0	0	0	7365	72	3	3	402	3	HRH4	18	22056745	Missense_Mutation	SNP	A	TCGA-CW-6090-01A-11D-1669-08	21709792	22056745	56020503	100	32220											
FAM59A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	29867421	29867421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	29867421	G	A	29867421	3	1	552	1	0	0	0	0	1	0	0	0	5599	1261	44	2	1500	2	FAM59A	18	29867421	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	7810676	29867421	48209827	101	32221											
ZNF397	84307	hgsc.bcm.edu	37	18	32822821	32822821	+	Silent	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	32822821	G	A	32822821	2	1	552	1	0	0	0	0	0	0	0	1	17895	933	33	2		2	ZNF397	18	32822821	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08	2955400	32822821	45254427	102	32222											
SHC2	25759	broad.mit.edu;hgsc.bcm.edu	37	19	422337	422337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	422337	G	T	422337	3	4	552	1	0	0	0	0	1	0	0	0	14284	1232	43	4	327	4	SHC2	19	422337	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08		422337	58706646	103	32223											
DOT1L	84444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2211150	2211150	+	Silent	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	2211150	G	A	2211150	2	1	552	1	0	0	0	0	0	0	0	1	4711	962	34	2		2	DOT1L	19	2211150	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08	1788813	2211150	56917833	104	32224											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8976796	8976796	+	Silent	SNP	T	T	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	8976796	T	C	8976796	2	2	552	1	0	0	0	0	0	0	0	1	9980	1567	55	3		3	MUC16	19	8976796	Silent	SNP	T	TCGA-CW-6090-01A-11D-1669-08	6765646	8976796	50152187	105	32225											
PDE4A	5141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10574570	10574570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	10574570	G	C	10574570	3	2	552	1	0	0	0	0	1	0	0	0	11646	962	34	4	2356	4	PDE4A	19	10574570	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	1597774	10574570	48554413	106	32226											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39038896	39038896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	39038896	G	A	39038896	3	1	552	1	0	0	0	0	1	0	0	0	13781	1087	38	1	12472	1	RYR1	19	39038896	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	28464326	39038896	20090087	107	32227											
ZNF546	339327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40520538	40520538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	40520538	C	T	40520538	3	4	552	1	0	0	0	0	1	0	0	0	17990	536	19	1	1379	1	ZNF546	19	40520538	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	1481642	40520538	18608445	108	32228											
EML2	24139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46119737	46119737	+	Silent	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	46119737	G	A	46119737	2	1	552	1	0	0	0	0	0	0	0	1	5099	1194	42	2		2	EML2	19	46119737	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08	5599199	46119737	13009246	109	32229											
RUVBL2	10856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49510383	49510383	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	49510383	G	C	49510383	3	2	552	1	0	0	0	0	1	0	0	0	13766	1116	39	4	392	4	RUVBL2	19	49510383	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08	3390646	49510383	9618600	110	32230											
SHANK1	50944	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51215207	51215207	+	Silent	SNP	G	G	A	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	51215207	G	A	51215207	2	1	552	1	0	0	0	0	0	0	0	1	14277	1252	44	2		2	SHANK1	19	51215207	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08	1704824	51215207	7913776	111	32231											
C20orf11	0	hgsc.bcm.edu;ucsc.edu	37	20	61576211	61576214	+	Frame_Shift_Del	DEL	AAAT	AAAT	-	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	AAAT	AAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	-	61576214	AAAT	-	61576211	7	5	552	1	0	1	0	1	0	0	0	0	2081	15	1	0	648	0	C20orf11	20	61576211	Frame_Shift_Del	DEL	AAAT	TCGA-CW-6090-01A-11D-1669-08		61576211	1449309	112	32232											
SYNJ1	8867	broad.mit.edu;hgsc.bcm.edu	37	21	34053921	34053921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	34053921	T	G	34053921	3	3	552	1	0	0	0	0	1	0	0	0	15464	1783	62	5	3605	5	SYNJ1	21	34053921	Missense_Mutation	SNP	T	TCGA-CW-6090-01A-11D-1669-08		34053921	14075974	113	32233											
SYNGR1	9145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	39777742	39777742	+	Silent	SNP	C	C	G	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	G	39777742	C	G	39777742	2	3	552	1	0	0	0	0	0	0	0	1	15460	755	27	4		4	SYNGR1	22	39777742	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08		39777742	11526824	114	32234											
CELSR1	9620	broad.mit.edu;hgsc.bcm.edu	37	22	46792566	46792566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	46792566	C	T	46792566	3	4	552	1	0	0	0	0	1	0	0	0	3223	652	23	1	3357	1	CELSR1	22	46792566	Missense_Mutation	SNP	C	TCGA-CW-6090-01A-11D-1669-08	7014824	46792566	4512000	115	32235											
MAGED2	10916	broad.mit.edu;hgsc.bcm.edu	37	X	54841822	54841822	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	C	54841822	G	C	54841822	3	2	552	1	0	0	0	0	1	0	0	0	9191	1175	41	4	1570	4	MAGED2	23	54841822	Missense_Mutation	SNP	G	TCGA-CW-6090-01A-11D-1669-08		54841822	100428738	116	32236											
MAGEE1	57692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	75648791	75648791	+	Silent	SNP	C	C	T	novel		TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	T	75648791	C	T	75648791	2	4	552	1	0	0	0	0	0	0	0	1	9192	668	24	2		2	MAGEE1	23	75648791	Silent	SNP	C	TCGA-CW-6090-01A-11D-1669-08	20806969	75648791	79621769	117	32237											
L1CAM	3897	hgsc.bcm.edu	37	X	153130543	153130543	+	Silent	SNP	G	G	A	rs35902890	bycluster;byfrequency;alternate_allele	TCGA-CW-6090-01A-11D-1669-08	TCGA-CW-6090-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3b2e654a-4c13-4dab-9e18-1445a43af3e6	fffaa9d0-d063-4b59-9328-323215bf3e88	A	153130543	G	A	153130543	2	1	552	1	0	0	0	0	0	0	0	1	8595	1130	39	1		1	L1CAM	23	153130543	Silent	SNP	G	TCGA-CW-6090-01A-11D-1669-08	77481752	153130543	2140017	118	32238											
AGRN	375790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	985343	985343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	985343	C	A	985343	3	1	553	1	0	0	0	0	1	0	0	0	397	623	22	4	4911	4	AGRN	1	985343	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08		985343	248265278	1	32239											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39909151	39909151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	39909151	C	G	39909151	3	3	553	1	0	0	0	0	1	0	0	0	9151	681	24	4	19608	4	MACF1	1	39909151	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	38923808	39909151	209341470	2	32240											
CCDC17	149483	broad.mit.edu;ucsc.edu	37	1	46087629	46087629	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	46087629	-	-	46087629	7	5	553	1	0	1	0	1	0	0	0	0	2795	1386	48	0	886	0	CCDC17	1	46087629	Frame_Shift_Del	DEL	G	TCGA-CW-6093-01A-11D-1669-08	6178478	46087629	203162992	3	32241											
NRD1	4898	broad.mit.edu;ucsc.edu	37	1	52287168	52287169	+	Splice_Site	INS	-	C	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	52287169	C	C	52287168	8	5	553	1	0	1	1	0	0	0	1	0	10652	405	14	0	2332	0	NRD1	1	52287168	Splice_Site	INS	-	TCGA-CW-6093-01A-11D-1669-08	6199539	52287168	196963453	4	32242											
PPAP2B	8613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	57044640	57044640	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	57044640	C	G	57044640	3	3	553	1	0	0	0	0	1	0	0	0	12298	739	26	4	909	4	PPAP2B	1	57044640	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	4757472	57044640	192205981	5	32243											
EVI5	7813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	93163497	93163497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	93163497	C	T	93163497	3	4	553	1	0	0	0	0	1	0	0	0	5291	913	32	2	1667	2	EVI5	1	93163497	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	36118857	93163497	156087124	6	32244											
CELSR2	1952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109805009	109805009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	109805009	G	A	109805009	3	1	553	1	0	0	0	0	1	0	0	0	3224	1174	41	2	4509	2	CELSR2	1	109805009	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	16641512	109805009	139445612	7	32245											
KIRREL	55243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158057581	158057581	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	158057581	C	G	158057581	3	3	553	1	0	0	0	0	1	0	0	0	8331	536	19	4	720	4	KIRREL	1	158057581	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	48252572	158057581	91193040	8	32246											
CD1D	912	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158152008	158152008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	158152008	C	A	158152008	3	1	553	1	0	0	0	0	1	0	0	0	2979	536	19	4	525	4	CD1D	1	158152008	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	94427	158152008	91098613	9	32247											
CASQ1	844	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160167357	160167357	+	Splice_Site	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	160167357	A	G	160167357	5	3	553	1	0	0	0	0	0	0	1	0	2682	434	15	3	807	3	CASQ1	1	160167357	Splice_Site	SNP	A	TCGA-CW-6093-01A-11D-1669-08	2015349	160167357	89083264	10	32248											
KIF14	9928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200587653	200587653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	200587653	A	T	200587653	3	4	553	1	0	0	0	0	1	0	0	0	8283	362	13	5	4863	5	KIF14	1	200587653	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	40420296	200587653	48662968	11	32249											
TP53BP2	7159	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223983955	223983955	+	Silent	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	223983955	C	T	223983955	2	4	553	1	0	0	0	0	0	0	0	1	16396	854	30	2		2	TP53BP2	1	223983955	Silent	SNP	C	TCGA-CW-6093-01A-11D-1669-08	23396302	223983955	25266666	12	32250											
CHRM3	1131	broad.mit.edu;hgsc.bcm.edu	37	1	240071728	240071728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	240071728	A	G	240071728	3	3	553	1	0	0	0	0	1	0	0	0	3380	188	7	3	979	3	CHRM3	1	240071728	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	16087773	240071728	9178893	13	32251											
BRE	9577	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	28467670	28467670	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	28467670	A	C	28467670	3	2	553	1	0	0	0	0	1	0	0	0	1511	246	9	5	909	5	BRE	2	28467670	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08		28467670	214731703	14	32252											
LTBP1	4052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	33413692	33413692	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	33413692	A	C	33413692	3	2	553	1	0	0	0	0	1	0	0	0	9080	246	9	5	1556	5	LTBP1	2	33413692	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	4946022	33413692	209785681	15	32253											
SMEK2	57223	hgsc.bcm.edu;ucsc.edu	37	2	55813839	55813840	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	55813840	-	A	55813839	7	5	553	1	0	1	1	0	0	0	0	0	14807	942	33	0	1566	0	SMEK2	2	55813839	Frame_Shift_Ins	INS	-	TCGA-CW-6093-01A-11D-1669-08	22400147	55813839	187385534	16	32254											
REG3G	130120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	79255386	79255386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	79255386	G	T	79255386	3	4	553	1	0	0	0	0	1	0	0	0	13226	1319	46	4	530	4	REG3G	2	79255386	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	23441547	79255386	163943987	17	32255											
RANBP2	5903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	109357073	109357073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	109357073	G	A	109357073	3	1	553	1	0	0	0	0	1	0	0	0	13041	1029	36	2	937	2	RANBP2	2	109357073	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	30101687	109357073	133842300	18	32256											
LIMS2	55679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128414990	128414990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	128414990	C	G	128414990	3	3	553	1	0	0	0	0	1	0	0	0	8811	623	22	4	903	4	LIMS2	2	128414990	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	19057917	128414990	114784383	19	32257											
FAM123C	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	131520963	131520963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	131520963	G	A	131520963	3	1	553	1	0	0	0	0	1	0	0	0	5428	1290	45	2	1320	2	FAM123C	2	131520963	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	3105973	131520963	111678410	20	32258											
XIRP2	129446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	168104885	168104885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	168104885	C	T	168104885	3	4	553	1	0	0	0	0	1	0	0	0	17442	838	29	2	7013	2	XIRP2	2	168104885	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	36583922	168104885	75094488	21	32259											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179425394	179425394	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	179425394	C	G	179425394	3	3	553	1	0	0	0	0	1	0	0	0	16747	922	32	4	22662	4	TTN	2	179425394	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	11320509	179425394	63773979	22	32260											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179426804	179426804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	179426804	A	T	179426804	3	4	553	1	0	0	0	0	1	0	0	0	16747	333	12	5	24072	5	TTN	2	179426804	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	1410	179426804	63772569	23	32261											
HECW2	57520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	197184155	197184155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	197184155	C	T	197184155	3	4	553	1	0	0	0	0	1	0	0	0	7050	681	24	2	3343	2	HECW2	2	197184155	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	17757351	197184155	46015218	24	32262											
ERBB4	2066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	212252692	212252692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	212252692	G	T	212252692	3	4	553	1	0	0	0	0	1	0	0	0	5211	1000	35	4	777	4	ERBB4	2	212252692	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	15068537	212252692	30946681	25	32263											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188224	10188224	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	10188224	G	-	10188224	7	5	553	1	0	1	0	1	0	0	0	0	17174	1000	35	0	373	0	VHL	3	10188224	Frame_Shift_Del	DEL	G	TCGA-CW-6093-01A-11D-1669-08		10188224	187834206	26	32264											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52682459	52682459	+	Splice_Site	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	52682459	C	T	52682459	5	4	553	1	0	0	0	0	0	0	1	0	11498	927	32	2	4282	2	PBRM1	3	52682459	Splice_Site	SNP	C	TCGA-CW-6093-01A-11D-1669-08	42494235	52682459	145339971	27	32265											
ROBO2	6092	broad.mit.edu	37	3	77147239	77147239	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	77147239	A	A	77147239	3	1	553	1	0	0	0	0	1	0	0	0	13527	1059	37	1	144	1	ROBO2	3	77147239	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	24464780	77147239	120875191	28	32266											
SENP7	57337	hgsc.bcm.edu;ucsc.edu	37	3	101090968	101090968	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	101090968	C	-	101090968	7	5	553	1	0	1	0	1	0	0	0	0	14064	739	26	0	2544	0	SENP7	3	101090968	Frame_Shift_Del	DEL	C	TCGA-CW-6093-01A-11D-1669-08	23943729	101090968	96931462	29	32267											
CD200	4345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	112059811	112059811	+	Silent	SNP	G	G	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	112059811	G	C	112059811	2	2	553	1	0	0	0	0	0	0	0	1	2982	1335	47	4		4	CD200	3	112059811	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08	10968843	112059811	85962619	30	32268											
H1FX	8971	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	129034182	129034182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	129034182	C	G	129034182	3	3	553	1	0	0	0	0	1	0	0	0	6930	912	32	4	81	4	H1FX	3	129034182	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	16974371	129034182	68988248	31	32269											
XRN1	54464	broad.mit.edu	37	3	142031463	142031463	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	142031463	A	A	142031463	3	1	553	1	0	0	0	0	1	0	0	0	17471	1319	46	2	333	2	XRN1	3	142031463	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	12997281	142031463	55990967	32	32270											
PLS1	5357	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	142430381	142430381	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	142430381	A	T	142430381	3	4	553	1	0	0	0	0	1	0	0	0	12114	359	13	5	1722	5	PLS1	3	142430381	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	398918	142430381	55592049	33	32271											
C3orf57	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	161064028	161064028	+	Silent	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	161064028	G	T	161064028	2	4	553	1	0	0	0	0	0	0	0	1	2237	987	35	4		4	C3orf57	3	161064028	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08	18633647	161064028	36958402	34	32272											
CLCN2	1181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184079226	184079226	+	Silent	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	184079226	C	G	184079226	2	3	553	1	0	0	0	0	0	0	0	1	3465	755	27	4		4	CLCN2	3	184079226	Silent	SNP	C	TCGA-CW-6093-01A-11D-1669-08	23015198	184079226	13943204	35	32273											
ZNF131	7690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	43161423	43161423	+	Silent	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	43161423	A	G	43161423	2	3	553	1	0	0	0	0	0	0	0	1	17733	175	7	3		3	ZNF131	5	43161423	Silent	SNP	A	TCGA-CW-6093-01A-11D-1669-08		43161423	137753837	36	32274											
SNX18	112574	broad.mit.edu;hgsc.bcm.edu	37	5	53839239	53839239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	53839239	C	A	53839239	3	1	553	1	0	0	0	0	1	0	0	0	14902	913	32	4	2124	4	SNX18	5	53839239	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	10677816	53839239	127076021	37	32275											
CDC25C	995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137621758	137621758	+	Silent	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	137621758	G	A	137621758	2	1	553	1	0	0	0	0	0	0	0	1	3066	962	34	2		2	CDC25C	5	137621758	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08	83782519	137621758	43293502	38	32276											
WDR55	54853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140049085	140049085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	140049085	A	C	140049085	3	2	553	1	0	0	0	0	1	0	0	0	17319	333	12	5	1024	5	WDR55	5	140049085	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	2427327	140049085	40866175	39	32277											
BRD2	6046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	32942463	32942463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	32942463	T	C	32942463	3	2	553	1	0	0	0	0	1	0	0	0	1504	1638	57	3	260	3	BRD2	6	32942463	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08		32942463	138172604	40	32278											
MAPK13	5603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36103575	36103575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	36103575	G	T	36103575	3	4	553	1	0	0	0	0	1	0	0	0	9282	1348	47	4	368	4	MAPK13	6	36103575	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	3161112	36103575	135011492	41	32279											
CUL7	9820	broad.mit.edu	37	6	43013037	43013037	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	43013037	C	C	43013037	3	2	553	1	0	0	0	0	1	0	0	0	4062	1638	57	3	2178	3	CUL7	6	43013037	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08	6909462	43013037	128102030	42	32280											
TAB2	23118	hgsc.bcm.edu;ucsc.edu	37	6	149699871	149699872	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	149699872	-	T	149699871	7	5	553	1	0	1	1	0	0	0	0	0	15508	14	1	0	826	0	TAB2	6	149699871	Frame_Shift_Ins	INS	-	TCGA-CW-6093-01A-11D-1669-08	106686834	149699871	21415196	43	32281											
MAP3K4	4216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	161470927	161470927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	161470927	G	T	161470927	3	4	553	1	0	0	0	0	1	0	0	0	9259	1020	36	4	1633	4	MAP3K4	6	161470927	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	11771056	161470927	9644140	44	32282											
MAP3K4	4216	broad.mit.edu;hgsc.bcm.edu	37	6	161507426	161507426	+	Silent	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	161507426	G	A	161507426	2	1	553	1	0	0	0	0	0	0	0	1	9259	933	33	2		2	MAP3K4	6	161507426	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08	36499	161507426	9607641	45	32283	406	2									
MAP3K4	4216	broad.mit.edu;hgsc.bcm.edu	37	6	161507427	161507427	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	161507427	A	T	161507427	3	4	553	1	0	0	0	0	1	0	0	0	9259	333	12	5	2419	5	MAP3K4	6	161507427	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	1	161507427	9607640	46	32284	406	2									
SDK1	221935	broad.mit.edu;ucsc.edu	37	7	4198097	4198097	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	4198097	A	A	4198097	3	1	553	1	0	0	0	0	1	0	0	0	13981	855	30	4	4765	4	SDK1	7	4198097	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08		4198097	154940566	47	32285											
PODXL	5420	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	131191353	131191353	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	131191353	C	G	131191353	3	3	553	1	0	0	0	0	1	0	0	0	12187	922	32	4	458	4	PODXL	7	131191353	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	126993256	131191353	27947310	48	32286											
DENND2A	27147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	140301525	140301525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	140301525	T	C	140301525	3	2	553	1	0	0	0	0	1	0	0	0	4431	1579	55	3	2428	3	DENND2A	7	140301525	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08	9110172	140301525	18837138	49	32287											
ZYX	7791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	143079761	143079761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	143079761	G	A	143079761	3	1	553	1	0	0	0	0	1	0	0	0	18266	1290	45	2	494	2	ZYX	7	143079761	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	2778236	143079761	16058902	50	32288											
GIMAP8	155038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150174244	150174244	+	Silent	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	150174244	C	T	150174244	2	4	553	1	0	0	0	0	0	0	0	1	6392	845	30	2		2	GIMAP8	7	150174244	Silent	SNP	C	TCGA-CW-6093-01A-11D-1669-08	7094483	150174244	8964419	51	32289											
NOM1	64434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	156752790	156752790	+	Silent	SNP	T	T	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	156752790	T	G	156752790	2	3	553	1	0	0	0	0	0	0	0	1	10537	1596	56	5		5	NOM1	7	156752790	Silent	SNP	T	TCGA-CW-6093-01A-11D-1669-08	6578546	156752790	2385873	52	32290											
PLEKHA2	59339	broad.mit.edu	37	8	38827144	38827144	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	38827144	A	A	38827144	4	1	553	1	0	0	0	0	0	1	0	0	12063	838	29	4	1163	4	PLEKHA2	8	38827144	Nonsense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08		38827144	107536878	53	32291											
SNAI2	6591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	49832751	49832751	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	49832751	T	A	49832751	3	1	553	1	0	0	0	0	1	0	0	0	14840	1551	54	5	485	5	SNAI2	8	49832751	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08	11005607	49832751	96531271	54	32292											
NAPRT1	93100	hgsc.bcm.edu;ucsc.edu	37	8	144657613	144657613	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	144657613	A	-	144657613	7	5	553	1	0	1	0	1	0	0	0	0	10172	246	9	0	361	0	NAPRT1	8	144657613	Frame_Shift_Del	DEL	A	TCGA-CW-6093-01A-11D-1669-08	94824862	144657613	1706409	55	32293											
FAM166B	730112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35562911	35562911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	35562911	C	A	35562911	3	1	553	1	0	0	0	0	1	0	0	0	5486	680	24	4	209	4	FAM166B	9	35562911	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08		35562911	105650520	56	32294											
POLR1E	64425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	37500907	37500907	+	Silent	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	37500907	C	T	37500907	2	4	553	1	0	0	0	0	0	0	0	1	12220	489	17	2		2	POLR1E	9	37500907	Silent	SNP	C	TCGA-CW-6093-01A-11D-1669-08	1937996	37500907	103712524	57	32295											
SLC44A1	23446	hgsc.bcm.edu;ucsc.edu	37	9	108127774	108127774	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	108127774	A	-	108127774	7	5	553	1	0	1	0	1	0	0	0	0	14648	246	9	0	1306	0	SLC44A1	9	108127774	Frame_Shift_Del	DEL	A	TCGA-CW-6093-01A-11D-1669-08	70626867	108127774	33085657	58	32296											
DENND1A	57706	broad.mit.edu	37	9	126144388	126144388	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	126144388	A	A	126144388	3	1	553	1	0	0	0	0	1	0	0	0	4428	1000	35	2	680	2	DENND1A	9	126144388	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	18016614	126144388	15069043	59	32297											
EXD3	54932	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	140249170	140249170	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	140249170	G	T	140249170	4	4	553	1	0	0	0	0	0	1	0	0	5301	1195	42	4	1873	4	EXD3	9	140249170	Nonsense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	14104782	140249170	964261	60	32298											
KIAA1217	56243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	24669919	24669919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	24669919	C	T	24669919	3	4	553	1	0	0	0	0	1	0	0	0	8223	681	24	2	486	2	KIAA1217	10	24669919	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08		24669919	110864828	61	32299											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	62039296	62039296	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	62039296	C	G	62039296	3	3	553	1	0	0	0	0	1	0	0	0	622	695	24	4	13418	4	ANK3	10	62039296	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	37369377	62039296	73495451	62	32300											
AP3M1	26985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75884279	75884279	+	Silent	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	75884279	G	A	75884279	2	1	553	1	0	0	0	0	0	0	0	1	747	1020	36	2		2	AP3M1	10	75884279	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08	13844983	75884279	59650468	63	32301											
ZFYVE27	118813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99509236	99509236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	99509236	A	G	99509236	3	3	553	1	0	0	0	0	1	0	0	0	17681	449	16	3	575	3	ZFYVE27	10	99509236	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	23624957	99509236	36025511	64	32302											
SORCS3	22986	broad.mit.edu;ucsc.edu	37	10	107016626	107016626	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	107016626	A	A	107016626	3	1	553	1	0	0	0	0	1	0	0	0	14945	1319	46	2	3485	2	SORCS3	10	107016626	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	7507390	107016626	28518121	65	32303											
PIK3C2A	5286	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	17118795	17118795	+	Silent	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	17118795	A	G	17118795	2	3	553	1	0	0	0	0	0	0	0	1	11916	11	1	3		3	PIK3C2A	11	17118795	Silent	SNP	A	TCGA-CW-6093-01A-11D-1669-08		17118795	117887721	66	32304											
HPS5	11234	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18314494	18314494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	18314494	G	T	18314494	3	4	553	1	0	0	0	0	1	0	0	0	7349	1348	47	4	1611	4	HPS5	11	18314494	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	1195699	18314494	116692022	67	32305											
AMBRA1	55626	hgsc.bcm.edu;ucsc.edu	37	11	46439573	46439574	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	46439574	AG	-	46439573	7	5	553	1	0	1	0	1	0	0	0	0	565	175	7	0	906	0	AMBRA1	11	46439573	Frame_Shift_Del	DEL	AG	TCGA-CW-6093-01A-11D-1669-08	28125079	46439573	88566943	68	32306											
SPRYD5	0	broad.mit.edu	37	11	55653105	55653105	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	55653105	A	A	55653105	3	1	553	1	0	0	0	0	1	0	0	0	15123	477	17	4	203	4	SPRYD5	11	55653105	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	9213532	55653105	79353411	69	32307											
SPRYD5	0	broad.mit.edu;hgsc.bcm.edu	37	11	55658689	55658689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	55658689	G	T	55658689	3	4	553	1	0	0	0	0	1	0	0	0	15123	1290	45	4	962	4	SPRYD5	11	55658689	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	5584	55658689	79347827	70	32308											
CYBASC3	220002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61120499	61120499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	61120499	G	A	61120499	3	1	553	1	0	0	0	0	1	0	0	0	4134	1319	46	2	234	2	CYBASC3	11	61120499	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	5461810	61120499	73886017	71	32309											
FERMT3	83706	hgsc.bcm.edu;ucsc.edu	37	11	63990606	63990607	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	63990607	AG	-	63990606	7	5	553	1	0	1	0	1	0	0	0	0	5826	72	3	0	1819	0	FERMT3	11	63990606	Frame_Shift_Del	DEL	AG	TCGA-CW-6093-01A-11D-1669-08	2870107	63990606	71015910	72	32310											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92543049	92543049	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	92543049	C	G	92543049	3	3	553	1	0	0	0	0	1	0	0	0	5698	845	30	4	9334	4	FAT3	11	92543049	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	28552443	92543049	42463467	73	32311											
MRE11A	4361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	94219122	94219122	+	Silent	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	94219122	G	T	94219122	2	4	553	1	0	0	0	0	0	0	0	1	9766	1277	45	4		4	MRE11A	11	94219122	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08	1676073	94219122	40787394	74	32312											
MMP10	4319	hgsc.bcm.edu;ucsc.edu	37	11	102650395	102650395	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	102650395	T	-	102650395	7	5	553	1	0	1	0	1	0	0	0	0	9656	1493	52	0	1279	0	MMP10	11	102650395	Frame_Shift_Del	DEL	T	TCGA-CW-6093-01A-11D-1669-08	8431273	102650395	32356121	75	32313											
TECTA	7007	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	120980198	120980198	+	Silent	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	120980198	C	T	120980198	2	4	553	1	0	0	0	0	0	0	0	1	15759	709	25	2		2	TECTA	11	120980198	Silent	SNP	C	TCGA-CW-6093-01A-11D-1669-08	18329803	120980198	14026318	76	32314											
ZNF202	7753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	123598248	123598248	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	123598248	C	T	123598248	4	4	553	1	0	0	0	0	0	1	0	0	17775	624	22	2	1066	2	ZNF202	11	123598248	Nonsense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	2618050	123598248	11408268	77	32315											
OR8G5	219865	broad.mit.edu;hgsc.bcm.edu	37	11	124135620	124135620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	124135620	G	A	124135620	3	1	553	1	0	0	0	0	1	0	0	0	11243	1377	48	2	900	2	OR8G5	11	124135620	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	537372	124135620	10870896	78	32316											
MANSC1	54682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	12483626	12483626	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	12483626	A	C	12483626	3	2	553	1	0	0	0	0	1	0	0	0	9231	304	11	5	668	5	MANSC1	12	12483626	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08		12483626	121368269	79	32317											
FMNL3	91010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	50050231	50050231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	50050231	C	T	50050231	3	4	553	1	0	0	0	0	1	0	0	0	5960	690	24	2	2314	2	FMNL3	12	50050231	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	37566605	50050231	83801664	80	32318											
OR6C2	341416	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55846275	55846275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	55846275	A	G	55846275	3	3	553	1	0	0	0	0	1	0	0	0	11198	101	4	3	280	3	OR6C2	12	55846275	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	5796044	55846275	78005620	81	32319											
C12orf56	115749	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	64671569	64671569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	64671569	T	C	64671569	3	2	553	1	0	0	0	0	1	0	0	0	1702	1493	52	3	563	3	C12orf56	12	64671569	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08	8825294	64671569	69180326	82	32320											
RASSF3	283349	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	65085342	65085342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	65085342	G	C	65085342	3	2	553	1	0	0	0	0	1	0	0	0	13100	1291	45	4	564	4	RASSF3	12	65085342	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	413773	65085342	68766553	83	32321											
C12orf26	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	82796821	82796821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	82796821	A	G	82796821	3	3	553	1	0	0	0	0	1	0	0	0	1681	439	16	3	1209	3	C12orf26	12	82796821	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	17711479	82796821	51055074	84	32322											
ATXN2	6311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	111893890	111893890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	111893890	A	C	111893890	3	2	553	1	0	0	0	0	1	0	0	0	1211	330	12	5	266	5	ATXN2	12	111893890	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	29097069	111893890	21958005	85	32323	407	2									
ATXN2	6311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	111893891	111893891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	111893891	T	A	111893891	3	1	553	1	0	0	0	0	1	0	0	0	1211	1464	51	5	267	5	ATXN2	12	111893891	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08	1	111893891	21958004	86	32324	407	2									
C12orf43	64897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121442228	121442228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	121442228	G	C	121442228	3	2	553	1	0	0	0	0	1	0	0	0	1691	1386	48	4	275	4	C12orf43	12	121442228	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	9548337	121442228	12409667	87	32325											
IL31	386653	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	122656992	122656992	+	Silent	SNP	T	T	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	122656992	T	C	122656992	2	2	553	1	0	0	0	0	0	0	0	1	7697	1451	51	3		3	IL31	12	122656992	Silent	SNP	T	TCGA-CW-6093-01A-11D-1669-08	1214764	122656992	11194903	88	32326											
KIAA1704	55425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	45589098	45589098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	45589098	C	A	45589098	3	1	553	1	0	0	0	0	1	0	0	0	8259	709	25	4	438	4	KIAA1704	13	45589098	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08		45589098	69580780	89	32327											
JUB	0	hgsc.bcm.edu;ucsc.edu	37	14	23444054	23444054	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	23444054	G	-	23444054	7	5	553	1	0	1	0	1	0	0	0	0	7975	987	35	0	212	0	JUB	14	23444054	Frame_Shift_Del	DEL	G	TCGA-CW-6093-01A-11D-1669-08		23444054	83905486	90	32328											
C14orf93	60686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23458974	23458974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	23458974	T	A	23458974	3	1	553	1	0	0	0	0	1	0	0	0	1784	1493	52	5	567	5	C14orf93	14	23458974	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08	14920	23458974	83890566	91	32329											
ARHGAP5	394	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	32619205	32619205	+	Silent	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	32619205	A	G	32619205	2	3	553	1	0	0	0	0	0	0	0	1	886	204	8	3		3	ARHGAP5	14	32619205	Silent	SNP	A	TCGA-CW-6093-01A-11D-1669-08	9160231	32619205	74730335	92	32330											
DLGAP5	9787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55655785	55655785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	55655785	T	C	55655785	3	2	553	1	0	0	0	0	1	0	0	0	4565	1783	62	3	2594	3	DLGAP5	14	55655785	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08	23036580	55655785	51693755	93	32331											
PSMA3	5684	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58714515	58714515	+	Silent	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	58714515	A	G	58714515	2	3	553	1	0	0	0	0	0	0	0	1	12678	69	3	3		3	PSMA3	14	58714515	Silent	SNP	A	TCGA-CW-6093-01A-11D-1669-08	3058730	58714515	48635025	94	32332											
NEDD4	4734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	56208025	56208025	+	Silent	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	56208025	G	A	56208025	2	1	553	1	0	0	0	0	0	0	0	1	10317	1103	39	1		1	NEDD4	15	56208025	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08		56208025	46323367	95	32333											
ADAMTS7	11173	broad.mit.edu	37	15	79090324	79090324	+	Silent	SNP	A	C	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	79090324	C	C	79090324	2	2	553	1	0	0	0	0	0	0	0	1	271	146	6	5		5	ADAMTS7	15	79090324	Silent	SNP	A	TCGA-CW-6093-01A-11D-1669-08	22882299	79090324	23441068	96	32334											
AGBL1	123624	broad.mit.edu;ucsc.edu	37	15	87066159	87066159	+	Silent	SNP	C	A	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	87066159	A	A	87066159	2	1	553	1	0	0	0	0	0	0	0	1	375	644	23	4		4	AGBL1	15	87066159	Silent	SNP	C	TCGA-CW-6093-01A-11D-1669-08	7975835	87066159	15465233	97	32335											
POLG	5428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89869918	89869918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	89869918	C	T	89869918	3	4	553	1	0	0	0	0	1	0	0	0	12207	768	27	1	2142	1	POLG	15	89869918	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	2803759	89869918	12661474	98	32336											
ZNF710	374655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90616318	90616318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	90616318	A	C	90616318	3	2	553	1	0	0	0	0	1	0	0	0	18127	131	5	5	1480	5	ZNF710	15	90616318	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	746400	90616318	11915074	99	32337											
EME2	197342	broad.mit.edu	37	16	1825568	1825568	+	Splice_Site	SNP	A	C	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	1825568	C	C	1825568	5	2	553	1	0	0	0	0	0	0	1	0	5091	202	7	5	837	5	EME2	16	1825568	Splice_Site	SNP	A	TCGA-CW-6093-01A-11D-1669-08		1825568	88529185	100	32338											
APOB48R	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28508786	28508786	+	Silent	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	28508786	A	G	28508786	2	3	553	1	0	0	0	0	0	0	0	1	786	98	4	3		3	APOB48R	16	28508786	Silent	SNP	A	TCGA-CW-6093-01A-11D-1669-08	26683218	28508786	61845967	101	32339											
C16orf70	80262	broad.mit.edu;ucsc.edu	37	16	67166430	67166430	+	Splice_Site	SNP	T	G	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	67166430	G	G	67166430	5	3	553	1	0	0	0	0	0	0	1	0	1831	1652	57	5	375	5	C16orf70	16	67166430	Splice_Site	SNP	T	TCGA-CW-6093-01A-11D-1669-08	38657644	67166430	23188323	102	32340											
NFAT5	10725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69681465	69681465	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	69681465	A	T	69681465	3	4	553	1	0	0	0	0	1	0	0	0	10367	14	1	5	802	5	NFAT5	16	69681465	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	2515035	69681465	20673288	103	32341											
ZFHX3	463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	72991477	72991477	+	Silent	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	72991477	G	A	72991477	2	1	553	1	0	0	0	0	0	0	0	1	17646	1103	39	1		1	ZFHX3	16	72991477	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08	3310012	72991477	17363276	104	32342											
ANKRD11	29123	broad.mit.edu	37	16	89345631	89345631	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	89345631	G	G	89345631	3	3	553	1	0	0	0	0	1	0	0	0	639	1783	62	5	692	5	ANKRD11	16	89345631	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08	16354154	89345631	1009122	105	32343											
NEURL4	84461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7224466	7224466	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	7224466	C	G	7224466	3	3	553	1	0	0	0	0	1	0	0	0	10354	893	31	4	1403	4	NEURL4	17	7224466	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08		7224466	73970744	106	32344											
MYH4	4622	hgsc.bcm.edu;ucsc.edu	37	17	10356638	10356638	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	10356638	T	-	10356638	7	5	553	1	0	1	0	1	0	0	0	0	10044	1725	60	0	2945	0	MYH4	17	10356638	Frame_Shift_Del	DEL	T	TCGA-CW-6093-01A-11D-1669-08	3132172	10356638	70838572	107	32345											
PPM1E	22843	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57057344	57057344	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	57057344	A	C	57057344	3	2	553	1	0	0	0	0	1	0	0	0	12348	246	9	5	1246	5	PPM1E	17	57057344	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	46700706	57057344	24137866	108	32346											
APOH	350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	64222147	64222147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	64222147	C	T	64222147	3	4	553	1	0	0	0	0	1	0	0	0	804	608	21	2	724	2	APOH	17	64222147	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	7164803	64222147	16973063	109	32347											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	7036007	7036007	+	Silent	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	7036007	C	T	7036007	2	4	553	1	0	0	0	0	0	0	0	1	8612	755	27	1		1	LAMA1	18	7036007	Silent	SNP	C	TCGA-CW-6093-01A-11D-1669-08		7036007	71041241	110	32348											
FAM38B	0	broad.mit.edu;hgsc.bcm.edu	37	18	10697808	10697808	+	Silent	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	10697808	C	T	10697808	2	4	553	1	0	0	0	0	0	0	0	1	5562	622	22	2		2	FAM38B	18	10697808	Silent	SNP	C	TCGA-CW-6093-01A-11D-1669-08	3661801	10697808	67379440	111	32349											
THEG	51298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	375847	375847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	375847	C	T	375847	3	4	553	1	0	0	0	0	1	0	0	0	15869	507	18	2	1047	2	THEG	19	375847	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08		375847	58753136	112	32350											
FZR1	51343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3523035	3523035	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	3523035	G	C	3523035	3	2	553	1	0	0	0	0	1	0	0	0	6145	933	33	4	50	4	FZR1	19	3523035	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	3147188	3523035	55605948	113	32351											
ACTL9	284382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8807902	8807902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	8807902	C	T	8807902	3	4	553	1	0	0	0	0	1	0	0	0	203	623	22	2	104	2	ACTL9	19	8807902	Missense_Mutation	SNP	C	TCGA-CW-6093-01A-11D-1669-08	5284867	8807902	50321081	114	32352											
MAST3	23031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18255405	18255405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	18255405	A	G	18255405	3	3	553	1	0	0	0	0	1	0	0	0	9333	72	3	3	2713	3	MAST3	19	18255405	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	9447503	18255405	40873578	115	32353											
ZFP14	57677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36831956	36831956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	G	36831956	A	G	36831956	3	3	553	1	0	0	0	0	1	0	0	0	17651	217	8	3	833	3	ZFP14	19	36831956	Missense_Mutation	SNP	A	TCGA-CW-6093-01A-11D-1669-08	18576551	36831956	22297027	116	32354											
SLC17A7	57030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49934326	49934326	+	Silent	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	49934326	G	A	49934326	2	1	553	1	0	0	0	0	0	0	0	1	14435	1306	46	2		2	SLC17A7	19	49934326	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08	13102370	49934326	9194657	117	32355											
PLCG1	5335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	39796506	39796506	+	Silent	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	39796506	G	T	39796506	2	4	553	1	0	0	0	0	0	0	0	1	12042	1219	43	4		4	PLCG1	20	39796506	Silent	SNP	G	TCGA-CW-6093-01A-11D-1669-08		39796506	23229014	118	32356											
SULF2	55959	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	46365503	46365503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	46365503	G	T	46365503	3	4	553	1	0	0	0	0	1	0	0	0	15383	1319	46	4	2329	4	SULF2	20	46365503	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	6568997	46365503	16660017	119	32357											
MYO18B	84700	broad.mit.edu;hgsc.bcm.edu	37	22	26164741	26164741	+	Silent	SNP	A	A	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	26164741	A	T	26164741	2	4	553	1	0	0	0	0	0	0	0	1	10073	291	11	5		5	MYO18B	22	26164741	Silent	SNP	A	TCGA-CW-6093-01A-11D-1669-08		26164741	25139825	120	32358											
GTSE1	51512	hgsc.bcm.edu;ucsc.edu	37	22	46725272	46725272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	-	46725272	C	-	46725272	7	5	553	1	0	1	0	1	0	0	0	0	6892	816	29	0	1982	0	GTSE1	22	46725272	Frame_Shift_Del	DEL	C	TCGA-CW-6093-01A-11D-1669-08	20560531	46725272	4579294	121	32359											
CXorf22	170063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	35974189	35974189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	A	35974189	G	A	35974189	3	1	553	1	0	0	0	0	1	0	0	0	4104	1145	40	1	1316	1	CXorf22	23	35974189	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08		35974189	119296371	122	32360											
CLCN5	1184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	49851500	49851500	+	Silent	SNP	C	C	T	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	T	49851500	C	T	49851500	2	4	553	1	0	0	0	0	0	0	0	1	3468	813	29	2		2	CLCN5	23	49851500	Silent	SNP	C	TCGA-CW-6093-01A-11D-1669-08	13877311	49851500	105419060	123	32361											
NUDT10	170685	broad.mit.edu;hgsc.bcm.edu	37	X	51075924	51075924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	51075924	T	C	51075924	3	2	553	1	0	0	0	0	1	0	0	0	10733	1696	59	3	109	3	NUDT10	23	51075924	Missense_Mutation	SNP	T	TCGA-CW-6093-01A-11D-1669-08	1224424	51075924	104194636	124	32362											
MAGEC1	9947	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	140994794	140994794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CW-6093-01A-11D-1669-08	TCGA-CW-6093-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b1beb37-1ed7-43c0-a532-56df7941111f	e75e7a34-73fd-425d-9dcd-db99f862d123	C	140994794	G	C	140994794	3	2	553	1	0	0	0	0	1	0	0	0	9187	1029	36	4	1610	4	MAGEC1	23	140994794	Missense_Mutation	SNP	G	TCGA-CW-6093-01A-11D-1669-08	89918870	140994794	14275766	125	32363											
ARID1A	8289	broad.mit.edu	37	1	27105895	27105896	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	27105896	-	A	27105895	7	5	554	1	0	1	1	0	0	0	0	0	913	1175	41	0	5584	0	ARID1A	1	27105895	Frame_Shift_Ins	INS	-	TCGA-CW-6097-01A-11D-1669-08		27105895	222144726	1	32364											
OR2T6	254879	broad.mit.edu	37	1	248551308	248551308	+	Silent	SNP	T	T	C			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	C	248551308	T	C	248551308	2	2	554	1	0	0	0	0	0	0	0	1	11036	1567	55	3		3	OR2T6	1	248551308	Silent	SNP	T	TCGA-CW-6097-01A-11D-1669-08	221445413	248551308	699313	2	32365											
GPR17	2840	broad.mit.edu	37	2	128408751	128408751	+	Missense_Mutation	SNP	G	G	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	128408751	G	A	128408751	3	1	554	1	0	0	0	0	1	0	0	0	6674	1087	38	1	532	1	GPR17	2	128408751	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08		128408751	114790622	3	32366											
POTEF	728378	broad.mit.edu	37	2	130832473	130832473	+	Missense_Mutation	SNP	C	C	T			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	T	130832473	C	T	130832473	3	4	554	1	0	0	0	0	1	0	0	0	12272	652	23	1	659	1	POTEF	2	130832473	Missense_Mutation	SNP	C	TCGA-CW-6097-01A-11D-1669-08	2423722	130832473	112366900	4	32367											
ABCA12	26154	broad.mit.edu	37	2	215820033	215820033	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	215820033	C	A	215820033	4	1	554	1	0	0	0	0	0	1	0	0	30	690	24	4	1545	4	ABCA12	2	215820033	Nonsense_Mutation	SNP	C	TCGA-CW-6097-01A-11D-1669-08	84987560	215820033	27379340	5	32368											
TM4SF20	79853	broad.mit.edu	37	2	228235653	228235653	+	Missense_Mutation	SNP	G	G	A	rs138005777		TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	228235653	G	A	228235653	3	1	554	1	0	0	0	0	1	0	0	0	15981	1087	38	1	474	1	TM4SF20	2	228235653	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08	12415620	228235653	14963720	6	32369											
GIGYF2	26058	broad.mit.edu	37	2	233675977	233675977	+	Missense_Mutation	SNP	C	C	T			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	T	233675977	C	T	233675977	3	4	554	1	0	0	0	0	1	0	0	0	6385	739	26	2	2050	2	GIGYF2	2	233675977	Missense_Mutation	SNP	C	TCGA-CW-6097-01A-11D-1669-08	5440324	233675977	9523396	7	32370											
SEPT2	4735	broad.mit.edu	37	2	242277165	242277165	+	Missense_Mutation	SNP	A	A	C			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	C	242277165	A	C	242277165	3	2	554	1	0	0	0	0	1	0	0	0	14077	275	10	5	576	5	SEPT2	2	242277165	Missense_Mutation	SNP	A	TCGA-CW-6097-01A-11D-1669-08	8601188	242277165	922208	8	32371											
BAP1	8314	broad.mit.edu	37	3	52437530	52437533	+	Frame_Shift_Del	DEL	ATGC	ATGC	-			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	-	52437533	ATGC	-	52437530	7	5	554	1	0	1	0	1	0	0	0	0	1311	449	16	0	578	0	BAP1	3	52437530	Frame_Shift_Del	DEL	ATGC	TCGA-CW-6097-01A-11D-1669-08		52437530	145584900	9	32372											
CHST2	9435	broad.mit.edu	37	3	142840289	142840289	+	Missense_Mutation	SNP	T	T	G			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	G	142840289	T	G	142840289	3	3	554	1	0	0	0	0	1	0	0	0	3406	1783	62	5	633	5	CHST2	3	142840289	Missense_Mutation	SNP	T	TCGA-CW-6097-01A-11D-1669-08	90402759	142840289	55182141	10	32373											
GPR149	344758	broad.mit.edu	37	3	154056047	154056047	+	Missense_Mutation	SNP	G	G	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	154056047	G	A	154056047	3	1	554	1	0	0	0	0	1	0	0	0	6661	1203	42	2	562	2	GPR149	3	154056047	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08	11215758	154056047	43966383	11	32374											
SPATA16	83893	broad.mit.edu	37	3	172835272	172835272	+	Missense_Mutation	SNP	G	G	A	rs144256069	by1000genomes	TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	172835272	G	A	172835272	3	1	554	1	0	0	0	0	1	0	0	0	15013	1144	40	1	1499	1	SPATA16	3	172835272	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08	18779225	172835272	25187158	12	32375											
RASGEF1B	153020	broad.mit.edu	37	4	82355860	82355860	+	Missense_Mutation	SNP	A	A	C			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	C	82355860	A	C	82355860	3	2	554	1	0	0	0	0	1	0	0	0	13083	333	12	5	304	5	RASGEF1B	4	82355860	Missense_Mutation	SNP	A	TCGA-CW-6097-01A-11D-1669-08		82355860	108798416	13	32376											
BTNL9	153579	broad.mit.edu	37	5	180486849	180486849	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	-	180486849	T	-	180486849	7	5	554	1	0	1	0	1	0	0	0	0	1570	1580	55	0	1633	0	BTNL9	5	180486849	Frame_Shift_Del	DEL	T	TCGA-CW-6097-01A-11D-1669-08		180486849	428411	14	32377											
EEF1A1	1915	broad.mit.edu	37	6	74228192	74228192	+	Missense_Mutation	SNP	C	C	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	74228192	C	A	74228192	3	1	554	1	0	0	0	0	1	0	0	0	4925	623	22	4	486	4	EEF1A1	6	74228192	Missense_Mutation	SNP	C	TCGA-CW-6097-01A-11D-1669-08		74228192	96886875	15	32378											
GPNMB	10457	broad.mit.edu	37	7	23313757	23313757	+	Missense_Mutation	SNP	C	C	T			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	T	23313757	C	T	23313757	3	4	554	1	0	0	0	0	1	0	0	0	6627	913	32	2	1675	2	GPNMB	7	23313757	Missense_Mutation	SNP	C	TCGA-CW-6097-01A-11D-1669-08		23313757	135824906	16	32379											
TAC1	6863	broad.mit.edu	37	7	97363056	97363056	+	Missense_Mutation	SNP	G	G	C			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	C	97363056	G	C	97363056	3	2	554	1	0	0	0	0	1	0	0	0	15510	1291	45	4	151	4	TAC1	7	97363056	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08	74049299	97363056	61775607	17	32380											
SNTG1	54212	broad.mit.edu	37	8	51569552	51569552	+	Missense_Mutation	SNP	G	G	T			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	T	51569552	G	T	51569552	3	4	554	1	0	0	0	0	1	0	0	0	14887	1223	43	4	979	4	SNTG1	8	51569552	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08		51569552	94794470	18	32381											
MUC2	4583	broad.mit.edu	37	11	1092904	1092904	+	Missense_Mutation	SNP	C	C	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	1092904	C	A	1092904	3	1	554	1	0	0	0	0	1	0	0	0	9982	507	18	4	4841	4	MUC2	11	1092904	Missense_Mutation	SNP	C	TCGA-CW-6097-01A-11D-1669-08		1092904	133913612	19	32382											
ARNTL	406	broad.mit.edu	37	11	13387083	13387083	+	Silent	SNP	C	C	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	13387083	C	A	13387083	2	1	554	1	0	0	0	0	0	0	0	1	967	644	23	4		4	ARNTL	11	13387083	Silent	SNP	C	TCGA-CW-6097-01A-11D-1669-08	12294179	13387083	121619433	20	32383											
OR8K1	390157	broad.mit.edu	37	11	56113847	56113847	+	Missense_Mutation	SNP	G	G	T			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	T	56113847	G	T	56113847	3	4	554	1	0	0	0	0	1	0	0	0	11250	933	33	4	335	4	OR8K1	11	56113847	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08	42726764	56113847	78892669	21	32384											
VWF	7450	broad.mit.edu	37	12	6161870	6161870	+	Silent	SNP	C	C	T			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	T	6161870	C	T	6161870	2	4	554	1	0	0	0	0	0	0	0	1	17258	639	23	1		1	VWF	12	6161870	Silent	SNP	C	TCGA-CW-6097-01A-11D-1669-08		6161870	127690025	22	32385											
OR6C75	390323	broad.mit.edu	37	12	55759683	55759683	+	Silent	SNP	A	A	G			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	G	55759683	A	G	55759683	2	3	554	1	0	0	0	0	0	0	0	1	11206	301	11	3		3	OR6C75	12	55759683	Silent	SNP	A	TCGA-CW-6097-01A-11D-1669-08	49597813	55759683	78092212	23	32386											
CDH5	1003	broad.mit.edu	37	16	66420782	66420782	+	Missense_Mutation	SNP	G	G	T			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	T	66420782	G	T	66420782	3	4	554	1	0	0	0	0	1	0	0	0	3115	1116	39	4	287	4	CDH5	16	66420782	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08		66420782	23933971	24	32387											
ELMO3	79767	broad.mit.edu	37	16	67237658	67237658	+	Missense_Mutation	SNP	A	A	T			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	T	67237658	A	T	67237658	3	4	554	1	0	0	0	0	1	0	0	0	5069	217	8	5	2278	5	ELMO3	16	67237658	Missense_Mutation	SNP	A	TCGA-CW-6097-01A-11D-1669-08	816876	67237658	23117095	25	32388											
MYH8	4626	broad.mit.edu	37	17	10297708	10297708	+	Missense_Mutation	SNP	G	G	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	10297708	G	A	10297708	3	1	554	1	0	0	0	0	1	0	0	0	10048	1319	46	2	813	2	MYH8	17	10297708	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08		10297708	70897502	26	32389											
TICAM1	148022	broad.mit.edu	37	19	4816506	4816506	+	Silent	SNP	C	C	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	4816506	C	A	4816506	2	1	554	1	0	0	0	0	0	0	0	1	15904	755	27	4		4	TICAM1	19	4816506	Silent	SNP	C	TCGA-CW-6097-01A-11D-1669-08		4816506	54312477	27	32390											
TMEM190	147744	broad.mit.edu	37	19	55889522	55889522	+	Missense_Mutation	SNP	A	A	G			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	G	55889522	A	G	55889522	3	3	554	1	0	0	0	0	1	0	0	0	16126	246	9	3	503	3	TMEM190	19	55889522	Missense_Mutation	SNP	A	TCGA-CW-6097-01A-11D-1669-08	51073016	55889522	3239461	28	32391											
U2AF2	11338	broad.mit.edu	37	19	56185302	56185302	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	-	56185302	C	-	56185302	7	5	554	1	0	1	0	1	0	0	0	0	16835	903	32	0	1342	0	U2AF2	19	56185302	Frame_Shift_Del	DEL	C	TCGA-CW-6097-01A-11D-1669-08	295780	56185302	2943681	29	32392											
TRO	7216	broad.mit.edu	37	X	54955458	54955458	+	Silent	SNP	C	C	T			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	T	54955458	C	T	54955458	2	4	554	1	0	0	0	0	0	0	0	1	16586	581	21	2		2	TRO	23	54955458	Silent	SNP	C	TCGA-CW-6097-01A-11D-1669-08		54955458	100315102	30	32393											
GAB3	139716	broad.mit.edu	37	X	153927719	153927719	+	Missense_Mutation	SNP	G	G	A			TCGA-CW-6097-01A-11D-1669-08	TCGA-CW-6097-11A-01D-1669-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3cfe810-7b8c-4c3e-a49a-eea4d1ae9533	c3a6d147-8cb9-4088-b340-278ccad97903	A	153927719	G	A	153927719	3	1	554	1	0	0	0	0	1	0	0	0	6157	1232	43	2	588	2	GAB3	23	153927719	Missense_Mutation	SNP	G	TCGA-CW-6097-01A-11D-1669-08	98972261	153927719	1342841	31	32394											
THAP3	90326	broad.mit.edu;ucsc.edu	37	1	6694078	6694079	+	Splice_Site	DEL	AG	-	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	6694079	-	-	6694078	8	5	555	1	0	1	0	1	0	0	1	0	15857	202	7	0	476	0	THAP3	1	6694078	Splice_Site	DEL	AG	TCGA-CZ-4853-01A-01D-1429-08		6694078	242556543	1	32395											
EIF4G3	8672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	21186921	21186921	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	21186921	T	A	21186921	3	1	555	1	0	0	0	0	1	0	0	0	5040	1838	64	5	1780	5	EIF4G3	1	21186921	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	14492843	21186921	228063700	2	32396											
MYCL1	4610	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40363241	40363241	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	40363241	G	A	40363241	4	1	555	1	0	0	0	0	0	1	0	0	10027	1095	38	1	200	1	MYCL1	1	40363241	Nonsense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	19176320	40363241	208887380	3	32397											
CACHD1	57685	hgsc.bcm.edu;ucsc.edu	37	1	65098290	65098290	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	65098290	A	-	65098290	7	5	555	1	0	1	0	1	0	0	0	0	2539	391	14	0	522	0	CACHD1	1	65098290	Frame_Shift_Del	DEL	A	TCGA-CZ-4853-01A-01D-1429-08	24735049	65098290	184152331	4	32398											
CELSR2	1952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109793167	109793167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	109793167	C	T	109793167	3	4	555	1	0	0	0	0	1	0	0	0	3224	797	28	2	468	2	CELSR2	1	109793167	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	44694877	109793167	139457454	5	32399											
MTMR11	10903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	149901785	149901785	+	Silent	SNP	G	G	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	149901785	G	C	149901785	2	2	555	1	0	0	0	0	0	0	0	1	9947	1219	43	4		4	MTMR11	1	149901785	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	40108618	149901785	99348836	6	32400											
SPTA1	6708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158646048	158646048	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	158646048	A	C	158646048	3	2	555	1	0	0	0	0	1	0	0	0	15128	72	3	5	6444	5	SPTA1	1	158646048	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	8744263	158646048	90604573	7	32401											
IPO9	55705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	201843415	201843415	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	201843415	G	A	201843415	2	1	555	1	0	0	0	0	0	0	0	1	7806	933	33	2		2	IPO9	1	201843415	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	43197367	201843415	47407206	8	32402											
CR1	1378	hgsc.bcm.edu;ucsc.edu	37	1	207753683	207753683	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	207753683	G	-	207753683	7	5	555	1	0	1	0	1	0	0	0	0	3842	1348	47	0	5153	0	CR1	1	207753683	Frame_Shift_Del	DEL	G	TCGA-CZ-4853-01A-01D-1429-08	5910268	207753683	41496938	9	32403											
RAD51AP2	729475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	17697415	17697415	+	Silent	SNP	T	T	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	17697415	T	A	17697415	2	1	555	1	0	0	0	0	0	0	0	1	13000	1741	61	5		5	RAD51AP2	2	17697415	Silent	SNP	T	TCGA-CZ-4853-01A-01D-1429-08		17697415	225501958	10	32404											
EMILIN1	11117	broad.mit.edu;hgsc.bcm.edu	37	2	27305278	27305278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	27305278	C	A	27305278	3	1	555	1	0	0	0	0	1	0	0	0	5095	739	26	4	853	4	EMILIN1	2	27305278	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	9607863	27305278	215894095	11	32405											
DCTN1	1639	broad.mit.edu;hgsc.bcm.edu	37	2	74598753	74598753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	74598753	G	T	74598753	3	4	555	1	0	0	0	0	1	0	0	0	4308	1232	43	4	3380	4	DCTN1	2	74598753	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	47293475	74598753	168600620	12	32406											
CKAP2L	150468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	113514506	113514506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	113514506	T	C	113514506	3	2	555	1	0	0	0	0	1	0	0	0	3445	1792	62	3	1819	3	CKAP2L	2	113514506	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	38915753	113514506	129684867	13	32407											
GLI2	2736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	121748151	121748151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	121748151	C	G	121748151	3	3	555	1	0	0	0	0	1	0	0	0	6445	623	22	4	4711	4	GLI2	2	121748151	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	8233645	121748151	121451222	14	32408											
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170081963	170081963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	170081963	C	A	170081963	3	1	555	1	0	0	0	0	1	0	0	0	8963	637	22	4	8760	4	LRP2	2	170081963	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	48333812	170081963	73117410	15	32409											
C2orf77	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170505718	170505718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	170505718	C	A	170505718	3	1	555	1	0	0	0	0	1	0	0	0	2196	507	18	4	375	4	C2orf77	2	170505718	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	423755	170505718	72693655	16	32410											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179591818	179591818	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	179591818	T	-	179591818	7	5	555	1	0	1	0	1	0	0	0	0	16747	1623	56	0	84431	0	TTN	2	179591818	Frame_Shift_Del	DEL	T	TCGA-CZ-4853-01A-01D-1429-08	9086100	179591818	63607555	17	32411	408	2									
TTN	7273	hgsc.bcm.edu	37	2	179591821	179591821	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	179591821	T	C	179591821	2	2	555	1	0	0	0	0	0	0	0	1	16747	1741	61	3		3	TTN	2	179591821	Silent	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	3	179591821	63607552	18	32412	408	2									
DNAH7	56171	broad.mit.edu	37	2	196720578	196720578	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	196720578	A	A	196720578	3	1	555	1	0	0	0	0	1	0	0	0	4608	1377	48	2	3606	2	DNAH7	2	196720578	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	17128757	196720578	46478795	19	32413											
ALS2	57679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	202598155	202598155	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	202598155	G	A	202598155	2	1	555	1	0	0	0	0	0	0	0	1	550	1165	41	2		2	ALS2	2	202598155	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	5877577	202598155	40601218	20	32414											
FZD5	7855	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	208632143	208632143	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	208632143	C	G	208632143	3	3	555	1	0	0	0	0	1	0	0	0	6140	855	30	4	440	4	FZD5	2	208632143	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	6033988	208632143	34567230	21	32415											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10183776	10183776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454;Illumina Miseq			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	10183776	G	C	10183776	3	2	555	1	0	0	0	0	1	0	0	0	17174	1087	38	4	247	4	VHL	3	10183776	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08		10183776	187838654	22	32416											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52649438	52649438	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	52649438	A	T	52649438	3	4	555	1	0	0	0	0	1	0	0	0	11498	304	11	5	3111	5	PBRM1	3	52649438	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	42465662	52649438	145372992	23	32417											
EAF2	55840	hgsc.bcm.edu;ucsc.edu	37	3	121554180	121554181	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	121554181	TC	-	121554180	7	5	555	1	0	1	0	1	0	0	0	0	4878	1770	62	0	50	0	EAF2	3	121554180	Frame_Shift_Del	DEL	TC	TCGA-CZ-4853-01A-01D-1429-08	68904742	121554180	76468250	24	32418	409	2									
EAF2	55840	hgsc.bcm.edu	37	3	121554183	121554183	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	121554183	C	T	121554183	2	4	555	1	0	0	0	0	0	0	0	1	4878	813	29	2		2	EAF2	3	121554183	Silent	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	3	121554183	76468247	25	32419	409	2									
KPNA4	3840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	160227602	160227602	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	160227602	C	A	160227602	4	1	555	1	0	0	0	0	0	1	0	0	8439	603	21	4	386	4	KPNA4	3	160227602	Nonsense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	38673419	160227602	37794828	26	32420											
PROL1	58503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	71275489	71275489	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	71275489	C	T	71275489	2	4	555	1	0	0	0	0	0	0	0	1	12564	639	23	1		1	PROL1	4	71275489	Silent	SNP	C	TCGA-CZ-4853-01A-01D-1429-08		71275489	119878787	27	32421											
CXCL10	3627	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	76943924	76943924	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	76943924	A	G	76943924	2	3	555	1	0	0	0	0	0	0	0	1	4080	388	14	3		3	CXCL10	4	76943924	Silent	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	5668435	76943924	114210352	28	32422											
BMP2K	55589	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	79808404	79808404	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	79808404	T	C	79808404	2	2	555	1	0	0	0	0	0	0	0	1	1460	1432	50	3		3	BMP2K	4	79808404	Silent	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	2864480	79808404	111345872	29	32423											
EGF	1950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	110897230	110897230	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	110897230	T	-	110897230	7	5	555	1	0	1	0	1	0	0	0	0	4964	1609	56	0	1942	0	EGF	4	110897230	Frame_Shift_Del	DEL	T	TCGA-CZ-4853-01A-01D-1429-08	31088826	110897230	80257046	30	32424											
METTL14	57721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	119626961	119626961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	119626961	A	T	119626961	3	4	555	1	0	0	0	0	1	0	0	0	9505	420	15	5	1089	5	METTL14	4	119626961	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	8729731	119626961	71527315	31	32425											
ADAMTS12	81792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33576548	33576548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	33576548	G	A	33576548	3	1	555	1	0	0	0	0	1	0	0	0	257	1203	42	2	1225	2	ADAMTS12	5	33576548	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08		33576548	147338712	32	32426											
DDX46	9879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134131704	134131704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	134131704	C	A	134131704	3	1	555	1	0	0	0	0	1	0	0	0	4366	912	32	4	1876	4	DDX46	5	134131704	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	100555156	134131704	46783556	33	32427											
PCDHB8	56128	broad.mit.edu;hgsc.bcm.edu	37	5	140559547	140559547	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	140559547	G	A	140559547	2	1	555	1	0	0	0	0	0	0	0	1	11555	1335	47	2		2	PCDHB8	5	140559547	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	6427843	140559547	40355713	34	32428											
TTC1	7265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	159437682	159437682	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	159437682	T	C	159437682	2	2	555	1	0	0	0	0	0	0	0	1	16690	1461	51	3		3	TTC1	5	159437682	Silent	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	18878135	159437682	21477578	35	32429											
DOCK2	1794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	169174444	169174444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	169174444	G	T	169174444	3	4	555	1	0	0	0	0	1	0	0	0	4689	942	33	4	2402	4	DOCK2	5	169174444	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	9736762	169174444	11740816	36	32430											
TSPAN17	26262	broad.mit.edu;hgsc.bcm.edu	37	5	176084597	176084597	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	176084597	G	A	176084597	2	1	555	1	0	0	0	0	0	0	0	1	16653	962	34	2		2	TSPAN17	5	176084597	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	6910153	176084597	4830663	37	32431											
KIF13A	63971	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	17794626	17794626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	17794626	C	A	17794626	3	1	555	1	0	0	0	0	1	0	0	0	8281	637	22	4	2426	4	KIF13A	6	17794626	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08		17794626	153320441	38	32432											
SEMA3C	10512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	80433459	80433459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	80433459	G	A	80433459	3	1	555	1	0	0	0	0	1	0	0	0	14039	1145	40	1	1535	1	SEMA3C	7	80433459	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08		80433459	78705204	39	32433											
ABP1	26	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	150558149	150558149	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	150558149	C	G	150558149	3	3	555	1	0	0	0	0	1	0	0	0	98	594	21	4	2122	4	ABP1	7	150558149	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	70124690	150558149	8580514	40	32434											
HR	55806	broad.mit.edu;hgsc.bcm.edu	37	8	21986313	21986313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	21986313	G	T	21986313	3	4	555	1	0	0	0	0	1	0	0	0	7354	1000	35	4	3270	4	HR	8	21986313	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08		21986313	124377709	41	32435											
MYST3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	41792289	41792289	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	41792289	T	G	41792289	3	3	555	1	0	0	0	0	1	0	0	0	10111	1609	56	5	2569	5	MYST3	8	41792289	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	19805976	41792289	104571733	42	32436											
PTDSS1	9791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	97342498	97342498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	97342498	C	A	97342498	3	1	555	1	0	0	0	0	1	0	0	0	12746	826	29	4	1273	4	PTDSS1	8	97342498	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	55550209	97342498	49021524	43	32437											
MTBP	27085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	121500410	121500410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	121500410	G	A	121500410	3	1	555	1	0	0	0	0	1	0	0	0	9919	1291	45	2	1223	2	MTBP	8	121500410	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	24157912	121500410	24863612	44	32438											
WDR67	93594	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	124138304	124138304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	124138304	T	A	124138304	3	1	555	1	0	0	0	0	1	0	0	0	17330	1696	59	5	1625	5	WDR67	8	124138304	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	2637894	124138304	22225718	45	32439											
SLC45A4	57210	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	142228421	142228421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	142228421	A	G	142228421	3	3	555	1	0	0	0	0	1	0	0	0	14656	420	15	3	1251	3	SLC45A4	8	142228421	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	18090117	142228421	4135601	46	32440											
RGP1	9827	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35752830	35752830	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	35752830	T	A	35752830	3	1	555	1	0	0	0	0	1	0	0	0	13297	1406	49	5	1293	5	RGP1	9	35752830	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08		35752830	105460601	47	32441											
WNK2	65268	broad.mit.edu	37	9	96070760	96070760	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	96070760	C	C	96070760	3	2	555	1	0	0	0	0	1	0	0	0	17390	1696	59	3	6516	3	WNK2	9	96070760	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	60317930	96070760	45142671	48	32442											
ANAPC2	29882	broad.mit.edu;hgsc.bcm.edu	37	9	140075307	140075307	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	140075307	A	T	140075307	3	4	555	1	0	0	0	0	1	0	0	0	603	72	3	5	949	5	ANAPC2	9	140075307	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	44004547	140075307	1138124	49	32443											
IL2RA	3559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	6067797	6067797	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	6067797	C	G	6067797	3	3	555	1	0	0	0	0	1	0	0	0	7693	608	21	4	590	4	IL2RA	10	6067797	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08		6067797	129466950	50	32444											
ARHGAP21	57584	broad.mit.edu;hgsc.bcm.edu	37	10	24910118	24910118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	24910118	C	T	24910118	3	4	555	1	0	0	0	0	1	0	0	0	871	565	20	2	5242	2	ARHGAP21	10	24910118	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	18842321	24910118	110624629	51	32445											
KIAA1462	57608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	30315665	30315665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	30315665	G	A	30315665	3	1	555	1	0	0	0	0	1	0	0	0	8241	1232	43	2	675	2	KIAA1462	10	30315665	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	5405547	30315665	105219082	52	32446											
CCAR1	55749	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70507264	70507264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	70507264	C	A	70507264	3	1	555	1	0	0	0	0	1	0	0	0	2732	913	32	4	793	4	CCAR1	10	70507264	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	40191599	70507264	65027483	53	32447											
MOB2	81532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1492592	1492592	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	1492592	G	T	1492592	4	4	555	1	0	0	0	0	0	1	0	0	9688	1140	40	4	391	4	MOB2	11	1492592	Nonsense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08		1492592	133513924	54	32448											
SLC5A12	159963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	26694953	26694953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	26694953	T	A	26694953	3	1	555	1	0	0	0	0	1	0	0	0	14677	1551	54	5	161	5	SLC5A12	11	26694953	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	25202361	26694953	108311563	55	32449											
BEST1	7439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61725623	61725623	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	61725623	G	A	61725623	2	1	555	1	0	0	0	0	0	0	0	1	1404	1277	45	2		2	BEST1	11	61725623	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	35030670	61725623	73280893	56	32450											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	92534186	92534186	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	92534186	G	T	92534186	2	4	555	1	0	0	0	0	0	0	0	1	5698	1277	45	4		4	FAT3	11	92534186	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	30808563	92534186	42472330	57	32451											
ST14	6768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	130064609	130064609	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	130064609	A	T	130064609	3	4	555	1	0	0	0	0	1	0	0	0	15223	217	8	5	1124	5	ST14	11	130064609	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	37530423	130064609	4941907	58	32452											
IQSEC3	440073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	280284	280284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	280284	G	A	280284	3	1	555	1	0	0	0	0	1	0	0	0	7826	1000	35	2	3121	2	IQSEC3	12	280284	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08		280284	133571611	59	32453											
BICD1	636	broad.mit.edu;ucsc.edu	37	12	32491840	32491840	+	Silent	SNP	C	A	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	32491840	A	A	32491840	2	1	555	1	0	0	0	0	0	0	0	1	1428	726	26	4		4	BICD1	12	32491840	Silent	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	32211556	32491840	101360055	60	32454											
LRP1	4035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57591375	57591375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	57591375	G	A	57591375	3	1	555	1	0	0	0	0	1	0	0	0	8958	1290	45	2	9440	2	LRP1	12	57591375	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	25099535	57591375	76260520	61	32455											
MYF6	4618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	81101549	81101549	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	81101549	G	T	81101549	2	4	555	1	0	0	0	0	0	0	0	1	10035	1219	43	4		4	MYF6	12	81101549	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	23510174	81101549	52750346	62	32456											
MYF6	4618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	81101620	81101620	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	81101620	T	A	81101620	4	1	555	1	0	0	0	0	0	1	0	0	10035	1821	63	5	124	5	MYF6	12	81101620	Nonsense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	71	81101620	52750275	63	32457											
GNPTAB	79158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	102179968	102179968	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	102179968	T	C	102179968	2	2	555	1	0	0	0	0	0	0	0	1	6552	1683	59	3		3	GNPTAB	12	102179968	Silent	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	21078348	102179968	31671927	64	32458											
RIC8B	55188	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	107209026	107209026	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	107209026	G	T	107209026	4	4	555	1	0	0	0	0	0	1	0	0	13369	1291	45	4	695	4	RIC8B	12	107209026	Nonsense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	5029058	107209026	26642869	65	32459											
PRDM4	11108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	108145796	108145797	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	108145797	-	C	108145796	7	5	555	1	0	1	1	0	0	0	0	0	12469	146	6	0	1915	0	PRDM4	12	108145796	Frame_Shift_Ins	INS	-	TCGA-CZ-4853-01A-01D-1429-08	936770	108145796	25706099	66	32460											
HVCN1	84329	hgsc.bcm.edu;ucsc.edu	37	12	111089051	111089052	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	111089052	-	T	111089051	7	5	555	1	0	1	1	0	0	0	0	0	7469	652	23	0	219	0	HVCN1	12	111089051	Frame_Shift_Ins	INS	-	TCGA-CZ-4853-01A-01D-1429-08	2943255	111089051	22762844	67	32461	410	2									
HVCN1	84329	hgsc.bcm.edu	37	12	111089052	111089052	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	111089052	G	T	111089052	2	4	555	1	0	0	0	0	0	0	0	1	7469	1115	39	4		4	HVCN1	12	111089052	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	1	111089052	22762843	68	32462	410	2									
CCDC62	84660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123282648	123282648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	123282648	A	C	123282648	3	2	555	1	0	0	0	0	1	0	0	0	2835	188	7	5	908	5	CCDC62	12	123282648	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	12193596	123282648	10569247	69	32463											
FZD10	11211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	130648663	130648663	+	Missense_Mutation	SNP	C	C	A	rs145130520	alternate_allele	TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	130648663	C	A	130648663	3	1	555	1	0	0	0	0	1	0	0	0	6136	535	19	4	1178	4	FZD10	12	130648663	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	7366015	130648663	3203232	70	32464											
PABPC3	5042	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	25670549	25670549	+	Silent	SNP	C	C	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	25670549	C	G	25670549	2	3	555	1	0	0	0	0	0	0	0	1	11372	581	21	4		4	PABPC3	13	25670549	Silent	SNP	C	TCGA-CZ-4853-01A-01D-1429-08		25670549	89499329	71	32465											
GPC5	2262	broad.mit.edu	37	13	92051340	92051340	+	Missense_Mutation	SNP	C	T	T	rs183780526	by1000genomes	TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	92051340	T	T	92051340	3	4	555	1	0	0	0	0	1	0	0	0	6608	681	24	2	42	2	GPC5	13	92051340	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	66380791	92051340	23118538	72	32466											
TMTC4	84899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	101277820	101277820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	101277820	T	C	101277820	3	2	555	1	0	0	0	0	1	0	0	0	16275	1638	57	3	497	3	TMTC4	13	101277820	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	9226480	101277820	13892058	73	32467											
PRKD1	5587	broad.mit.edu;hgsc.bcm.edu	37	14	30132919	30132919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	30132919	C	T	30132919	3	4	555	1	0	0	0	0	1	0	0	0	12528	826	29	2	2116	2	PRKD1	14	30132919	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08		30132919	77216621	74	32468											
SYNE2	23224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64457262	64457262	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	64457262	T	-	64457262	7	5	555	1	0	1	0	1	0	0	0	0	15458	1493	52	0	2521	0	SYNE2	14	64457262	Frame_Shift_Del	DEL	T	TCGA-CZ-4853-01A-01D-1429-08	34324343	64457262	42892278	75	32469											
PLD4	122618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	105396381	105396381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	105396381	T	C	105396381	3	2	555	1	0	0	0	0	1	0	0	0	12055	1725	60	3	674	3	PLD4	14	105396381	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	40939119	105396381	1953159	76	32470											
RPUSD2	27079	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40865743	40865743	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	40865743	G	T	40865743	2	4	555	1	0	0	0	0	0	0	0	1	13680	1364	48	4		4	RPUSD2	15	40865743	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08		40865743	61665649	77	32471											
PIGB	9488	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	55621962	55621962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	55621962	G	A	55621962	3	1	555	1	0	0	0	0	1	0	0	0	11892	1377	48	2	581	2	PIGB	15	55621962	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	14756219	55621962	46909430	78	32472											
DYX1C1	161582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	55722880	55722880	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	55722880	T	A	55722880	3	1	555	1	0	0	0	0	1	0	0	0	4864	1722	60	5	118	5	DYX1C1	15	55722880	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	100918	55722880	46808512	79	32473											
FOXB1	27023	broad.mit.edu;hgsc.bcm.edu	37	15	60297463	60297463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	60297463	A	T	60297463	3	4	555	1	0	0	0	0	1	0	0	0	5999	188	7	5	303	5	FOXB1	15	60297463	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	4574583	60297463	42233929	80	32474											
VPS13C	54832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	62352506	62352506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	62352506	T	C	62352506	3	2	555	1	0	0	0	0	1	0	0	0	17203	1725	60	3	11561	3	VPS13C	15	62352506	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	2055043	62352506	40178886	81	32475											
KIAA1199	57214	broad.mit.edu	37	15	81166242	81166242	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	81166242	A	A	81166242	3	1	555	1	0	0	0	0	1	0	0	0	8220	1174	41	2	24	2	KIAA1199	15	81166242	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	18813736	81166242	21365150	82	32476											
C15orf26	161502	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	81440807	81440807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	81440807	A	T	81440807	3	4	555	1	0	0	0	0	1	0	0	0	1789	333	12	5	865	5	C15orf26	15	81440807	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	274565	81440807	21090585	83	32477											
BLM	641	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91295052	91295052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	91295052	G	A	91295052	3	1	555	1	0	0	0	0	1	0	0	0	1445	1291	45	2	845	2	BLM	15	91295052	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	9854245	91295052	11236340	84	32478											
PCSK6	5046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	101938736	101938737	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	101938737	TT	-	101938736	7	5	555	1	0	1	0	1	0	0	0	0	11611	1609	56	0	2583	0	PCSK6	15	101938736	Frame_Shift_Del	DEL	TT	TCGA-CZ-4853-01A-01D-1429-08	10643684	101938736	592656	85	32479											
SOX8	30812	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1034895	1034895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	1034895	G	A	1034895	3	1	555	1	0	0	0	0	1	0	0	0	14970	1059	37	1	860	1	SOX8	16	1034895	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08		1034895	89319858	86	32480											
CCNF	899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2481270	2481270	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	2481270	C	T	2481270	2	4	555	1	0	0	0	0	0	0	0	1	2924	845	30	2		2	CCNF	16	2481270	Silent	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	1446375	2481270	87873483	87	32481											
TNRC6A	27327	broad.mit.edu;ucsc.edu	37	16	24816069	24816069	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	24816069	T	T	24816069	3	4	555	1	0	0	0	0	1	0	0	0	16352	855	30	2	3931	2	TNRC6A	16	24816069	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	22334799	24816069	65538684	88	32482											
MVP	9961	broad.mit.edu;ucsc.edu	37	16	29858549	29858549	+	Missense_Mutation	SNP	G	A	A	rs3815823	bycluster;byfrequency	TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	29858549	A	A	29858549	3	1	555	1	0	0	0	0	1	0	0	0	10003	1058	37	1	2347	1	MVP	16	29858549	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	5042480	29858549	60496204	89	32483											
ZFP90	146198	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68598080	68598080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	68598080	G	A	68598080	3	1	555	1	0	0	0	0	1	0	0	0	17666	942	33	2	1404	2	ZFP90	16	68598080	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	38739531	68598080	21756673	90	32484											
HIC1	3090	broad.mit.edu;ucsc.edu	37	17	1961130	1961130	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	1961130	-	-	1961130	7	5	555	1	0	1	0	1	0	0	0	0	7108	991	35	0	1209	0	HIC1	17	1961130	Frame_Shift_Del	DEL	G	TCGA-CZ-4853-01A-01D-1429-08		1961130	79234080	91	32485											
SPAG7	9552	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4863167	4863167	+	Silent	SNP	A	A	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	4863167	A	T	4863167	2	4	555	1	0	0	0	0	0	0	0	1	14996	175	7	5		5	SPAG7	17	4863167	Silent	SNP	A	TCGA-CZ-4853-01A-01D-1429-08	2902037	4863167	76332043	92	32486											
PIK3R6	146850	broad.mit.edu	37	17	8738616	8738616	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	8738616	A	A	8738616	3	1	555	1	0	0	0	0	1	0	0	0	11930	768	27	4	1696	4	PIK3R6	17	8738616	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	3875449	8738616	72456594	93	32487											
CPD	1362	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	28750570	28750570	+	Silent	SNP	G	G	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	28750570	G	C	28750570	2	2	555	1	0	0	0	0	0	0	0	1	3800	1335	47	4		4	CPD	17	28750570	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	20011954	28750570	52444640	94	32488											
NF1	4763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29664584	29664584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	29664584	T	C	29664584	3	2	555	1	0	0	0	0	1	0	0	0	10363	1821	63	3	6857	3	NF1	17	29664584	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	914014	29664584	51530626	95	32489											
KRTAP4-9	100132386	broad.mit.edu	37	17	39261882	39261882	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	39261882	A	A	39261882	3	1	555	1	0	0	0	0	1	0	0	0	8564	1087	38	1	244	1	KRTAP4-9	17	39261882	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	9597298	39261882	41933328	96	32490											
BRCA1	672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41243622	41243622	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	41243622	T	A	41243622	3	1	555	1	0	0	0	0	1	0	0	0	1500	1493	52	5	1791	5	BRCA1	17	41243622	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	1981740	41243622	39951588	97	32491	411	2									
BRCA1	672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41243623	41243623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	41243623	T	G	41243623	3	3	555	1	0	0	0	0	1	0	0	0	1500	1841	64	5	1792	5	BRCA1	17	41243623	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	1	41243623	39951587	98	32492	411	2									
SEPT4	5414	hgsc.bcm.edu;ucsc.edu	37	17	56604046	56604064	+	Frame_Shift_Del	DEL	AGAGGAATCATAGGGATCA	AGAGGAATCATAGGGATCA	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	AGAGGAATCATAGGGATCA	AGAGGAATCATAGGGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	56604064	AGAGGAATCATAGGGATCA	-	56604046	7	5	555	1	0	1	0	1	0	0	0	0	14079	175	7	0	1211	0	SEPT4	17	56604046	Frame_Shift_Del	DEL	AGAGGAATCATAGGGATCA	TCGA-CZ-4853-01A-01D-1429-08	15360423	56604046	24591164	99	32493											
GNA13	10672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	63049764	63049764	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	63049764	C	G	63049764	3	3	555	1	0	0	0	0	1	0	0	0	6508	826	29	4	779	4	GNA13	17	63049764	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	6445718	63049764	18145446	100	32494											
SETBP1	26040	broad.mit.edu	37	18	42281379	42281379	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	42281379	G	G	42281379	3	3	555	1	0	0	0	0	1	0	0	0	14142	855	30	4	70	4	SETBP1	18	42281379	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08		42281379	35795869	101	32495	412	2									
SETBP1	26040	broad.mit.edu	37	18	42281380	42281380	+	Silent	SNP	C	G	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	42281380	G	G	42281380	2	3	555	1	0	0	0	0	0	0	0	1	14142	668	24	4		4	SETBP1	18	42281380	Silent	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	1	42281380	35795868	102	32496	412	2									
C19orf44	84167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	16620643	16620643	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	16620643	C	-	16620643	7	5	555	1	0	1	0	1	0	0	0	0	1929	564	20	0	1497	0	C19orf44	19	16620643	Frame_Shift_Del	DEL	C	TCGA-CZ-4853-01A-01D-1429-08		16620643	42508340	103	32497											
SYCN	342898	broad.mit.edu;hgsc.bcm.edu	37	19	39694580	39694580	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	39694580	G	T	39694580	2	4	555	1	0	0	0	0	0	0	0	1	15442	1103	39	4		4	SYCN	19	39694580	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	23073937	39694580	19434403	104	32498											
MACROD2	140733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	16021897	16021897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	16021897	A	T	16021897	3	4	555	1	0	0	0	0	1	0	0	0	9153	275	10	5	1267	5	MACROD2	20	16021897	Missense_Mutation	SNP	A	TCGA-CZ-4853-01A-01D-1429-08		16021897	47003623	105	32499											
NKX2-2	4821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	21492858	21492858	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	G	21492858	C	G	21492858	3	3	555	1	0	0	0	0	1	0	0	0	10457	508	18	4	300	4	NKX2-2	20	21492858	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	5470961	21492858	41532662	106	32500											
MYH7B	57644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33585398	33585398	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	33585398	G	C	33585398	3	2	555	1	0	0	0	0	1	0	0	0	10047	991	35	4	3946	4	MYH7B	20	33585398	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	12092540	33585398	29440122	107	32501											
PIGT	51604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44050027	44050027	+	Silent	SNP	C	C	T	rs141166012	alternate_allele	TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	44050027	C	T	44050027	2	4	555	1	0	0	0	0	0	0	0	1	11906	610	22	2		2	PIGT	20	44050027	Silent	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	10464629	44050027	18975493	108	32502											
PCIF1	63935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44575022	44575022	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	-	44575022	G	-	44575022	7	5	555	1	0	1	0	1	0	0	0	0	11587	1130	39	0	1658	0	PCIF1	20	44575022	Frame_Shift_Del	DEL	G	TCGA-CZ-4853-01A-01D-1429-08	524995	44575022	18450498	109	32503											
MKL1	57591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	40831553	40831553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	40831553	T	C	40831553	3	2	555	1	0	0	0	0	1	0	0	0	9608	1792	62	3	2826	3	MKL1	22	40831553	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08		40831553	10473013	110	32504											
C22orf9	0	broad.mit.edu;hgsc.bcm.edu	37	22	45601754	45601754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	45601754	C	A	45601754	3	1	555	1	0	0	0	0	1	0	0	0	2153	855	30	4	990	4	C22orf9	22	45601754	Missense_Mutation	SNP	C	TCGA-CZ-4853-01A-01D-1429-08	4770201	45601754	5702812	111	32505											
TLR8	51311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	12938126	12938126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	12938126	T	A	12938126	3	1	555	1	0	0	0	0	1	0	0	0	15969	1838	64	5	973	5	TLR8	23	12938126	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08		12938126	142332434	112	32506											
SSX5	6758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48053635	48053635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	T	48053635	G	T	48053635	3	4	555	1	0	0	0	0	1	0	0	0	15220	1281	45	4	372	4	SSX5	23	48053635	Missense_Mutation	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	35115509	48053635	107216925	113	32507											
SHROOM4	57477	broad.mit.edu;hgsc.bcm.edu	37	X	50556986	50556986	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	A	50556986	G	A	50556986	2	1	555	1	0	0	0	0	0	0	0	1	14309	1161	41	2		2	SHROOM4	23	50556986	Silent	SNP	G	TCGA-CZ-4853-01A-01D-1429-08	2503351	50556986	104713574	114	32508											
KIAA2022	340533	broad.mit.edu;hgsc.bcm.edu	37	X	73962314	73962314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4853-01A-01D-1429-08	TCGA-CZ-4853-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	bdef62d1-a036-43b4-811b-bf4beab7eca8	32e7b838-5d52-4880-8d59-f19e54cd177f	C	73962314	T	C	73962314	3	2	555	1	0	0	0	0	1	0	0	0	8276	1667	58	3	2480	3	KIAA2022	23	73962314	Missense_Mutation	SNP	T	TCGA-CZ-4853-01A-01D-1429-08	23405328	73962314	81308246	115	32509											
PADI6	353238	hgsc.bcm.edu	37	1	17699723	17699723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	17699723	G	A	17699723	3	1	556	1	0	0	0	0	1	0	0	0	11388	1174	41	2	295	2	PADI6	1	17699723	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10		17699723	231550898	1	32510											
NBPF3	84224	hgsc.bcm.edu	37	1	21808099	21808099	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	21808099	A	G	21808099	2	3	556	1	0	0	0	0	0	0	0	1	10204	301	11	3		3	NBPF3	1	21808099	Silent	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	4108376	21808099	227442522	2	32511			1	65		2	2	30	A		7.96241e-05
NBPF3	84224	hgsc.bcm.edu	37	1	21808128	21808128	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	21808128	A	T	21808128	3	4	556	1	0	0	0	0	1	0	0	0	10204	275	10	5	1518	5	NBPF3	1	21808128	Missense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	29	21808128	227442493	3	32512			1	65		2	2	30	A		7.96241e-05
C1QA	712	hgsc.bcm.edu	37	1	22965443	22965443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	22965443	G	A	22965443	3	1	556	1	0	0	0	0	1	0	0	0	1956	1145	40	1	287	1	C1QA	1	22965443	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	1157315	22965443	226285178	4	32513											
IL22RA1	58985	hgsc.bcm.edu;ucsc.edu	37	1	24460780	24460780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	24460780	C	A	24460780	3	1	556	1	0	0	0	0	1	0	0	0	7680	739	26	4	1288	4	IL22RA1	1	24460780	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	1495337	24460780	224789841	5	32514											
KIAA0907	22889	hgsc.bcm.edu	37	1	155887391	155887391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	155887391	G	C	155887391	3	2	556	1	0	0	0	0	1	0	0	0	8206	1203	42	4	521	4	KIAA0907	1	155887391	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	131426611	155887391	93363230	6	32515											
ITLN1	55600	hgsc.bcm.edu;ucsc.edu	37	1	160853223	160853223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	160853223	G	T	160853223	3	4	556	1	0	0	0	0	1	0	0	0	7917	1319	46	4	813	4	ITLN1	1	160853223	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	4965832	160853223	88397398	7	32516											
GALNT2	2590	hgsc.bcm.edu;ucsc.edu	37	1	230338993	230338993	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	230338993	A	T	230338993	4	4	556	1	0	0	0	0	0	1	0	0	6220	363	13	5	341	5	GALNT2	1	230338993	Nonsense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	69485770	230338993	18911628	8	32517											
SIPA1L2	57568	hgsc.bcm.edu	37	1	232581296	232581296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	232581296	C	T	232581296	3	4	556	1	0	0	0	0	1	0	0	0	14343	652	23	1	1888	1	SIPA1L2	1	232581296	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	2242303	232581296	16669325	9	32518											
CCDC74B	91409	hgsc.bcm.edu	37	2	130897218	130897218	+	Silent	SNP	T	T	C	rs13006246	bycluster;byfrequency;by1000genomes	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	130897218	T	C	130897218	2	2	556	1	0	0	0	0	0	0	0	1	2850	1683	59	3		3	CCDC74B	2	130897218	Silent	SNP	T	TCGA-CZ-4854-01A-01D-1373-10		130897218	112302155	10	32519											
LRP2	4036	hgsc.bcm.edu;ucsc.edu	37	2	170029718	170029718	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	170029718	G	A	170029718	2	1	556	1	0	0	0	0	0	0	0	1	8963	929	33	2		2	LRP2	2	170029718	Silent	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	39132500	170029718	73169655	11	32520											
ORC2L	0	hgsc.bcm.edu	37	2	201814292	201814292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	201814292	T	C	201814292	3	2	556	1	0	0	0	0	1	0	0	0	11269	1850	64	3	1476	3	ORC2L	2	201814292	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	31784574	201814292	41385081	12	32521											
NUP210	23225	hgsc.bcm.edu;ucsc.edu	37	3	13415333	13415333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	13415333	C	T	13415333	3	4	556	1	0	0	0	0	1	0	0	0	10767	797	28	2	4307	2	NUP210	3	13415333	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10		13415333	184607097	13	32522											
CCDC36	339834	hgsc.bcm.edu;ucsc.edu	37	3	49293580	49293580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	49293580	T	C	49293580	3	2	556	1	0	0	0	0	1	0	0	0	2810	1841	64	3	676	3	CCDC36	3	49293580	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	35878247	49293580	148728850	14	32523											
PBRM1	55193	ucsc.edu	37	3	52620685	52620685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	52620685	G	A	52620685	3	1	556	1	0	0	0	0	1	0	0	0	11498	1348	47	2	1801	2	PBRM1	3	52620685	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	3327105	52620685	145401745	15	32524											
MUC13	56667	hgsc.bcm.edu;ucsc.edu	37	3	124632487	124632487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	124632487	C	A	124632487	3	1	556	1	0	0	0	0	1	0	0	0	9978	855	30	4	552	4	MUC13	3	124632487	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	72011802	124632487	73389943	16	32525											
SLC9A9	285195	hgsc.bcm.edu	37	3	142985575	142985575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	142985575	T	C	142985575	3	2	556	1	0	0	0	0	1	0	0	0	14734	1551	54	3	34	3	SLC9A9	3	142985575	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	18353088	142985575	55036855	17	32526											
DHX36	170506	hgsc.bcm.edu;ucsc.edu	37	3	154018902	154018902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	154018902	T	C	154018902	3	2	556	1	0	0	0	0	1	0	0	0	4511	1812	63	3	1858	3	DHX36	3	154018902	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	11033327	154018902	44003528	18	32527											
IGF2BP2	10644	hgsc.bcm.edu;ucsc.edu	37	3	185376129	185376129	+	Silent	SNP	A	A	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	185376129	A	C	185376129	2	2	556	1	0	0	0	0	0	0	0	1	7581	202	7	5		5	IGF2BP2	3	185376129	Silent	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	31357227	185376129	12646301	19	32528											
PPARGC1A	10891	hgsc.bcm.edu;ucsc.edu	37	4	23815962	23815962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	23815962	C	T	23815962	3	4	556	1	0	0	0	0	1	0	0	0	12307	594	21	2	1276	2	PPARGC1A	4	23815962	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10		23815962	167338314	20	32529											
SLC4A4	8671	hgsc.bcm.edu	37	4	72400063	72400063	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	72400063	A	C	72400063	3	2	556	1	0	0	0	0	1	0	0	0	14669	11	1	5	2587	5	SLC4A4	4	72400063	Missense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	48584101	72400063	118754213	21	32530											
MTRR	4552	hgsc.bcm.edu;ucsc.edu	37	5	7875376	7875376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	7875376	G	T	7875376	3	4	556	1	0	0	0	0	1	0	0	0	9968	1116	39	4	384	4	MTRR	5	7875376	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10		7875376	173039884	22	32531											
MAP3K1	4214	hgsc.bcm.edu	37	5	56178606	56178606	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	56178606	G	C	56178606	3	2	556	1	0	0	0	0	1	0	0	0	9250	1348	47	4	3633	4	MAP3K1	5	56178606	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	48303230	56178606	124736654	23	32532											
DPYSL3	1809	hgsc.bcm.edu;ucsc.edu	37	5	146780285	146780285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	146780285	C	A	146780285	3	1	556	1	0	0	0	0	1	0	0	0	4750	796	28	4	652	4	DPYSL3	5	146780285	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	90601679	146780285	34134975	24	32533											
F12	2161	hgsc.bcm.edu	37	5	176832137	176832137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	176832137	T	C	176832137	3	2	556	1	0	0	0	0	1	0	0	0	5341	1396	49	3	1436	3	F12	5	176832137	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	30051852	176832137	4083123	25	32534											
ERVFRDE1	0	hgsc.bcm.edu	37	6	11105465	11105465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	11105465	T	C	11105465	3	2	556	1	0	0	0	0	1	0	0	0	5248	1850	64	3	1541	3	ERVFRDE1	6	11105465	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10		11105465	160009602	26	32535											
MDC1	9656	hgsc.bcm.edu;ucsc.edu	37	6	30672175	30672175	+	Silent	SNP	C	C	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	30672175	C	G	30672175	2	3	556	1	0	0	0	0	0	0	0	1	9410	610	22	4		4	MDC1	6	30672175	Silent	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	19566710	30672175	140442892	27	32536											
ITPR3	3710	hgsc.bcm.edu;ucsc.edu	37	6	33635679	33635679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	33635679	G	T	33635679	3	4	556	1	0	0	0	0	1	0	0	0	7929	962	34	4	1886	4	ITPR3	6	33635679	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	2963504	33635679	137479388	28	32537											
RNF217	154214	hgsc.bcm.edu	37	6	125366368	125366368	+	Silent	SNP	C	C	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	125366368	C	G	125366368	2	3	556	1	0	0	0	0	0	0	0	1	13494	726	26	4		4	RNF217	6	125366368	Silent	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	91730689	125366368	45748699	29	32538											
AHR	196	hgsc.bcm.edu;ucsc.edu	37	7	17378783	17378783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	17378783	C	T	17378783	3	4	556	1	0	0	0	0	1	0	0	0	416	565	20	2	1372	2	AHR	7	17378783	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10		17378783	141759880	30	32539											
POU6F2	11281	hgsc.bcm.edu;ucsc.edu	37	7	39472854	39472854	+	Missense_Mutation	SNP	C	C	T	rs146637189	alternate_allele	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	39472854	C	T	39472854	3	4	556	1	0	0	0	0	1	0	0	0	12292	536	19	1	1231	1	POU6F2	7	39472854	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	22094071	39472854	119665809	31	32540											
BLK	640	hgsc.bcm.edu;ucsc.edu	37	8	11415475	11415475	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	11415475	C	T	11415475	2	4	556	1	0	0	0	0	0	0	0	1	1444	747	26	2		2	BLK	8	11415475	Silent	SNP	C	TCGA-CZ-4854-01A-01D-1373-10		11415475	134948547	32	32541											
ARFGEF1	10565	hgsc.bcm.edu;ucsc.edu	37	8	68128844	68128844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	68128844	G	C	68128844	3	2	556	1	0	0	0	0	1	0	0	0	852	1000	35	4	910	4	ARFGEF1	8	68128844	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	56713369	68128844	78235178	33	32542											
TMEM70	54968	hgsc.bcm.edu	37	8	74893388	74893388	+	Splice_Site	SNP	A	A	G	rs183973249	by1000genomes	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	74893388	A	G	74893388	5	3	556	1	0	0	0	0	0	0	1	0	16211	434	15	3	333	3	TMEM70	8	74893388	Splice_Site	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	6764544	74893388	71470634	34	32543											
NAPRT1	93100	hgsc.bcm.edu	37	8	144658711	144658711	+	Silent	SNP	G	G	A	rs872935	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	144658711	G	A	144658711	2	1	556	1	0	0	0	0	0	0	0	1	10172	991	35	2		2	NAPRT1	8	144658711	Silent	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	69765323	144658711	1705311	35	32544											
RECQL4	9401	hgsc.bcm.edu;ucsc.edu	37	8	145740784	145740784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	145740784	G	T	145740784	3	4	556	1	0	0	0	0	1	0	0	0	13215	1000	35	4	2371	4	RECQL4	8	145740784	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	1082073	145740784	623238	36	32545											
FKBP15	23307	hgsc.bcm.edu;ucsc.edu	37	9	115931605	115931605	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	115931605	G	A	115931605	2	1	556	1	0	0	0	0	0	0	0	1	5912	1277	45	2		2	FKBP15	9	115931605	Silent	SNP	G	TCGA-CZ-4854-01A-01D-1373-10		115931605	25281826	37	32546											
OR5B3	441608	hgsc.bcm.edu;ucsc.edu	37	11	58170027	58170027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	58170027	G	T	58170027	3	4	556	1	0	0	0	0	1	0	0	0	11159	933	33	4	90	4	OR5B3	11	58170027	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10		58170027	76836489	38	32547											
SLC22A20	440044	hgsc.bcm.edu;ucsc.edu	37	11	64985140	64985140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	64985140	T	A	64985140	3	1	556	1	0	0	0	0	1	0	0	0	14464	1435	50	5	630	5	SLC22A20	11	64985140	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	6815113	64985140	70021376	39	32548											
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276827	71276827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	71276827	G	T	71276827	3	4	556	1	0	0	0	0	1	0	0	0	8566	1203	42	4	196	4	KRTAP5-10	11	71276827	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	6291687	71276827	63729689	40	32549											
ARHGEF17	9828	hgsc.bcm.edu	37	11	73068089	73068089	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	73068089	A	T	73068089	3	4	556	1	0	0	0	0	1	0	0	0	900	72	3	5	3941	5	ARHGEF17	11	73068089	Missense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	1791262	73068089	61938427	41	32550											
GDPD5	81544	hgsc.bcm.edu	37	11	75188686	75188686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	75188686	C	T	75188686	3	4	556	1	0	0	0	0	1	0	0	0	6334	768	27	1	1782	1	GDPD5	11	75188686	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	2120597	75188686	59817830	42	32551											
EXPH5	23086	hgsc.bcm.edu	37	11	108385374	108385374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	108385374	A	G	108385374	3	3	556	1	0	0	0	0	1	0	0	0	5324	14	1	3	5113	3	EXPH5	11	108385374	Missense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	33196688	108385374	26621142	43	32552											
TRIM29	23650	hgsc.bcm.edu	37	11	119996570	119996570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	119996570	A	G	119996570	3	3	556	1	0	0	0	0	1	0	0	0	16515	304	11	3	628	3	TRIM29	11	119996570	Missense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	11611196	119996570	15009946	44	32553											
HSPA8	3312	hgsc.bcm.edu	37	11	122928453	122928453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	122928453	C	T	122928453	3	4	556	1	0	0	0	0	1	0	0	0	7423	922	32	2	14	2	HSPA8	11	122928453	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	2931883	122928453	12078063	45	32554											
GRAMD1B	57476	hgsc.bcm.edu;ucsc.edu	37	11	123489493	123489493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	123489493	T	A	123489493	3	1	556	1	0	0	0	0	1	0	0	0	6755	1522	53	5	2064	5	GRAMD1B	11	123489493	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	561040	123489493	11517023	46	32555											
SLC48A1	55652	hgsc.bcm.edu;ucsc.edu	37	12	48172917	48172917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	48172917	C	A	48172917	3	1	556	1	0	0	0	0	1	0	0	0	14662	912	32	4	249	4	SLC48A1	12	48172917	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10		48172917	85678978	47	32556											
CNPY2	10330	hgsc.bcm.edu;ucsc.edu	37	12	56705186	56705186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	56705186	G	A	56705186	3	1	556	1	0	0	0	0	1	0	0	0	3630	1116	39	1	343	1	CNPY2	12	56705186	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	8532269	56705186	77146709	48	32557											
DPY19L2	283417	hgsc.bcm.edu	37	12	64062052	64062052	+	Missense_Mutation	SNP	G	G	A	rs10878074	bycluster;byfrequency;by1000genomes	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	64062052	G	A	64062052	3	1	556	1	0	0	0	0	1	0	0	0	4743	1203	42	2	2242	2	DPY19L2	12	64062052	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	7356866	64062052	69789843	49	32558											
OAS2	4939	hgsc.bcm.edu;ucsc.edu	37	12	113448226	113448226	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	113448226	C	T	113448226	2	4	556	1	0	0	0	0	0	0	0	1	10807	813	29	2		2	OAS2	12	113448226	Silent	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	49386174	113448226	20403669	50	32559											
MPHOSPH8	54737	hgsc.bcm.edu	37	13	20220763	20220763	+	Missense_Mutation	SNP	C	C	A	rs72653464	byfrequency	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	20220763	C	A	20220763	3	1	556	1	0	0	0	0	1	0	0	0	9734	507	18	4	560	4	MPHOSPH8	13	20220763	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10		20220763	94949115	51	32560											
PABPC3	5042	hgsc.bcm.edu;ucsc.edu	37	13	25670873	25670873	+	Silent	SNP	A	A	G	rs77142265		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	25670873	A	G	25670873	2	3	556	1	0	0	0	0	0	0	0	1	11372	291	11	3		3	PABPC3	13	25670873	Silent	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	5450110	25670873	89499005	52	32561	413	2									
PABPC3	5042	hgsc.bcm.edu	37	13	25670877	25670877	+	Missense_Mutation	SNP	G	G	A	rs112107735		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	25670877	G	A	25670877	3	1	556	1	0	0	0	0	1	0	0	0	11372	971	34	2	543	2	PABPC3	13	25670877	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	4	25670877	89499001	53	32562	413	2									
THSD1	55901	hgsc.bcm.edu	37	13	52952681	52952681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	52952681	C	A	52952681	3	1	556	1	0	0	0	0	1	0	0	0	15889	768	27	4	1138	4	THSD1	13	52952681	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	27281804	52952681	62217197	54	32563											
STON2	85439	hgsc.bcm.edu	37	14	81744471	81744471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	81744471	T	C	81744471	3	2	556	1	0	0	0	0	1	0	0	0	15330	1696	59	3	1539	3	STON2	14	81744471	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10		81744471	25605069	55	32564											
CHGA	1113	hgsc.bcm.edu	37	14	93397681	93397681	+	Missense_Mutation	SNP	G	G	A	rs150244309	bycluster;by1000genomes	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	93397681	G	A	93397681	3	1	556	1	0	0	0	0	1	0	0	0	3340	1117	39	1	464	1	CHGA	14	93397681	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	11653210	93397681	13951859	56	32565											
CYFIP1	23191	hgsc.bcm.edu	37	15	22926030	22926030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	22926030	A	G	22926030	3	3	556	1	0	0	0	0	1	0	0	0	4139	64	3	3	178	3	CYFIP1	15	22926030	Missense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10		22926030	79605362	57	32566											
ISLR	3671	hgsc.bcm.edu	37	15	74467763	74467763	+	Missense_Mutation	SNP	C	C	G	rs138253214	alternate_allele	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	74467763	C	G	74467763	3	3	556	1	0	0	0	0	1	0	0	0	7865	874	31	4	566	4	ISLR	15	74467763	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	51541733	74467763	28063629	58	32567											
ACAN	176	hgsc.bcm.edu	37	15	89398733	89398733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	89398733	C	A	89398733	3	1	556	1	0	0	0	0	1	0	0	0	117	681	24	4	2959	4	ACAN	15	89398733	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	14930970	89398733	13132659	59	32568											
C16orf78	123970	hgsc.bcm.edu	37	16	49412406	49412406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	49412406	A	G	49412406	3	3	556	1	0	0	0	0	1	0	0	0	1837	275	10	3	306	3	C16orf78	16	49412406	Missense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10		49412406	40942347	60	32569											
CDH11	1009	hgsc.bcm.edu;ucsc.edu	37	16	65022084	65022084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	65022084	C	A	65022084	3	1	556	1	0	0	0	0	1	0	0	0	3099	680	24	4	1443	4	CDH11	16	65022084	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	15609678	65022084	25332669	61	32570											
TMCO7	0	hgsc.bcm.edu	37	16	68877598	68877598	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	68877598	G	T	68877598	2	4	556	1	0	0	0	0	0	0	0	1	16013	1306	46	4		4	TMCO7	16	68877598	Silent	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	3855514	68877598	21477155	62	32571											
KIAA1609	57707	hgsc.bcm.edu	37	16	84529460	84529460	+	Silent	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	84529460	C	A	84529460	2	1	556	1	0	0	0	0	0	0	0	1	8254	842	30	4		4	KIAA1609	16	84529460	Silent	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	15651862	84529460	5825293	63	32572											
ANKFY1	51479	hgsc.bcm.edu	37	17	4083152	4083152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	4083152	G	T	4083152	3	4	556	1	0	0	0	0	1	0	0	0	626	1232	43	4	1284	4	ANKFY1	17	4083152	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10		4083152	77112058	64	32573											
ADORA2B	136	hgsc.bcm.edu	37	17	15878585	15878585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	15878585	C	A	15878585	3	1	556	1	0	0	0	0	1	0	0	0	328	913	32	4	934	4	ADORA2B	17	15878585	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	11795433	15878585	65316625	65	32574											
TNFAIP1	7126	hgsc.bcm.edu;ucsc.edu	37	17	26669383	26669383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	26669383	G	A	26669383	3	1	556	1	0	0	0	0	1	0	0	0	16284	1319	46	2	647	2	TNFAIP1	17	26669383	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	10790798	26669383	54525827	66	32575											
SUPT6H	6830	hgsc.bcm.edu;ucsc.edu	37	17	27011637	27011637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	27011637	G	A	27011637	3	1	556	1	0	0	0	0	1	0	0	0	15412	1029	36	2	2329	2	SUPT6H	17	27011637	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	342254	27011637	54183573	67	32576											
CDH19	28513	hgsc.bcm.edu;ucsc.edu	37	18	64172144	64172144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	64172144	C	G	64172144	3	3	556	1	0	0	0	0	1	0	0	0	3106	826	29	4	98	4	CDH19	18	64172144	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10		64172144	13905104	68	32577											
CNN2	1265	hgsc.bcm.edu	37	19	1036169	1036169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	1036169	T	A	1036169	3	1	556	1	0	0	0	0	1	0	0	0	3612	1667	58	5	449	5	CNN2	19	1036169	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10		1036169	58092814	69	32578											
BTBD2	55643	hgsc.bcm.edu	37	19	1986502	1986502	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	1986502	G	A	1986502	2	1	556	1	0	0	0	0	0	0	0	1	1545	1277	45	2		2	BTBD2	19	1986502	Silent	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	950333	1986502	57142481	70	32579											
JUNB	3726	hgsc.bcm.edu	37	19	12903618	12903618	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	12903618	C	G	12903618	3	3	556	1	0	0	0	0	1	0	0	0	7977	478	17	4	1035	4	JUNB	19	12903618	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	10917116	12903618	46225365	71	32580											
CCDC123	0	hgsc.bcm.edu	37	19	33444682	33444682	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	33444682	T	A	33444682	4	1	556	1	0	0	0	0	0	1	0	0	2761	1617	56	5	2084	5	CCDC123	19	33444682	Nonsense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	20541064	33444682	25684301	72	32581											
CHST8	64377	hgsc.bcm.edu	37	19	34180263	34180263	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	34180263	G	A	34180263	2	1	556	1	0	0	0	0	0	0	0	1	3412	991	35	2		2	CHST8	19	34180263	Silent	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	735581	34180263	24948720	73	32582											
ZNF30	90075	hgsc.bcm.edu	37	19	35435241	35435241	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	35435241	G	A	35435241	2	1	556	1	0	0	0	0	0	0	0	1	17842	1020	36	2		2	ZNF30	19	35435241	Silent	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	1254978	35435241	23693742	74	32583											
CD177	57126	hgsc.bcm.edu	37	19	43860255	43860255	+	Missense_Mutation	SNP	T	T	G	rs12981771	bycluster	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	43860255	T	G	43860255	3	3	556	1	0	0	0	0	1	0	0	0	2973	1464	51	5	632	5	CD177	19	43860255	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	8425014	43860255	15268728	75	32584											
SIGLEC8	27181	hgsc.bcm.edu;ucsc.edu	37	19	51955677	51955677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	C	51955677	A	C	51955677	3	2	556	1	0	0	0	0	1	0	0	0	14327	188	7	5	47	5	SIGLEC8	19	51955677	Missense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	8095422	51955677	7173306	76	32585											
ZNF83	55769	hgsc.bcm.edu	37	19	53117118	53117118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	53117118	C	T	53117118	3	4	556	1	0	0	0	0	1	0	0	0	18195	893	31	1	854	1	ZNF83	19	53117118	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	1161441	53117118	6011865	77	32586											
PABPC1L	80336	hgsc.bcm.edu;ucsc.edu	37	20	43559156	43559156	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	43559156	C	G	43559156	3	3	556	1	0	0	0	0	1	0	0	0	11371	594	21	4	1058	4	PABPC1L	20	43559156	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10		43559156	19466364	78	32587											
ZBP1	81030	hgsc.bcm.edu	37	20	56195329	56195329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	56195329	G	T	56195329	3	4	556	1	0	0	0	0	1	0	0	0	17533	1116	39	4	1375	4	ZBP1	20	56195329	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	12636173	56195329	6830191	79	32588											
KIF4A	24137	hgsc.bcm.edu	37	X	69561758	69561758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	69561758	C	A	69561758	3	1	556	1	0	0	0	0	1	0	0	0	8310	595	21	4	1281	4	KIF4A	23	69561758	Missense_Mutation	SNP	C	TCGA-CZ-4854-01A-01D-1373-10		69561758	85708802	80	32589											
TMEM31	203562	hgsc.bcm.edu	37	X	102968789	102968789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	102968789	A	T	102968789	3	4	556	1	0	0	0	0	1	0	0	0	16167	217	8	5	376	5	TMEM31	23	102968789	Missense_Mutation	SNP	A	TCGA-CZ-4854-01A-01D-1373-10	33407031	102968789	52301771	81	32590											
SLC25A5	292	hgsc.bcm.edu	37	X	118603864	118603864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	118603864	G	A	118603864	3	1	556	1	0	0	0	0	1	0	0	0	14525	1203	42	2	358	2	SLC25A5	23	118603864	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	15635075	118603864	36666696	82	32591											
SLC25A5	292	hgsc.bcm.edu	37	X	118604409	118604409	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	118604409	C	T	118604409	2	4	556	1	0	0	0	0	0	0	0	1	14525	639	23	1		1	SLC25A5	23	118604409	Silent	SNP	C	TCGA-CZ-4854-01A-01D-1373-10	545	118604409	36666151	83	32592											
CT47B1	643311	hgsc.bcm.edu	37	X	120008791	120008791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	T	120008791	G	T	120008791	3	4	556	1	0	0	0	0	1	0	0	0	3991	1203	42	4	173	4	CT47B1	23	120008791	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	1404382	120008791	35261769	84	32593											
CT47B1	643311	hgsc.bcm.edu;ucsc.edu	37	X	120009118	120009118	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	G	120009118	T	G	120009118	3	3	556	1	0	0	0	0	1	0	0	0	3991	1406	49	5	500	5	CT47B1	23	120009118	Missense_Mutation	SNP	T	TCGA-CZ-4854-01A-01D-1373-10	327	120009118	35261442	85	32594											
PLXNA3	55558	hgsc.bcm.edu	37	X	153692792	153692792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	7016e136-5c55-4ac9-b262-51529391aa79	09f66e4a-abaf-4331-ad1e-ed63263bb35e	A	153692792	G	A	153692792	3	1	556	1	0	0	0	0	1	0	0	0	12128	1145	40	1	1906	1	PLXNA3	23	153692792	Missense_Mutation	SNP	G	TCGA-CZ-4854-01A-01D-1373-10	33683674	153692792	1577768	86	32595											
KLHL17	339451	hgsc.bcm.edu;ucsc.edu	37	1	897301	897301	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	897301	G	T	897301	2	4	557	1	0	0	0	0	0	0	0	1	8379	1335	47	4		4	KLHL17	1	897301	Silent	SNP	G	TCGA-CZ-4856-01A-02D-1429-08		897301	248353320	1	32596	414	2									
KLHL17	339451	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	897302	897302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	897302	G	T	897302	3	4	557	1	0	0	0	0	1	0	0	0	8379	1232	43	4	600	4	KLHL17	1	897302	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	1	897302	248353319	2	32597	414	2									
CSMD2	114784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	34033301	34033301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	34033301	G	A	34033301	3	1	557	1	0	0	0	0	1	0	0	0	3947	1115	39	1	2324	1	CSMD2	1	34033301	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	33135999	34033301	215217320	3	32598											
ZMYM4	9202	broad.mit.edu;hgsc.bcm.edu	37	1	35870746	35870746	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	35870746	G	A	35870746	4	1	557	1	0	0	0	0	0	1	0	0	17714	1241	43	2	3745	2	ZMYM4	1	35870746	Nonsense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	1837445	35870746	213379875	4	32599											
EIF2C3	192669	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36509078	36509078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	G	36509078	A	G	36509078	3	3	557	1	0	0	0	0	1	0	0	0	5009	43	2	3	2269	3	EIF2C3	1	36509078	Missense_Mutation	SNP	A	TCGA-CZ-4856-01A-02D-1429-08	638332	36509078	212741543	5	32600											
KPRP	448834	hgsc.bcm.edu;ucsc.edu	37	1	152732937	152732937	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	-	152732937	C	-	152732937	7	5	557	1	0	1	0	1	0	0	0	0	8443	854	30	0	875	0	KPRP	1	152732937	Frame_Shift_Del	DEL	C	TCGA-CZ-4856-01A-02D-1429-08	116223859	152732937	96517684	6	32601											
CD1D	912	hgsc.bcm.edu;ucsc.edu	37	1	158151283	158151284	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	G	158151284	-	G	158151283	7	5	557	1	0	1	1	0	0	0	0	0	2979	1551	54	0	106	0	CD1D	1	158151283	Frame_Shift_Ins	INS	-	TCGA-CZ-4856-01A-02D-1429-08	5418346	158151283	91099338	7	32602											
PLA2G4A	5321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186839572	186839572	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	186839572	G	A	186839572	2	1	557	1	0	0	0	0	0	0	0	1	12008	962	34	2		2	PLA2G4A	1	186839572	Silent	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	28688289	186839572	62411049	8	32603											
NID1	4811	broad.mit.edu	37	1	236192916	236192916	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	236192916	T	T	236192916	3	4	557	1	0	0	0	0	1	0	0	0	10421	1328	46	4	2127	4	NID1	1	236192916	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	49353344	236192916	13057705	9	32604											
MARCH7	64844	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160585646	160585646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	G	160585646	A	G	160585646	3	3	557	1	0	0	0	0	1	0	0	0	9313	159	6	3	115	3	MARCH7	2	160585646	Missense_Mutation	SNP	A	TCGA-CZ-4856-01A-02D-1429-08		160585646	82613727	10	32605											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10188322	10188322	+	Splice_Site	SNP	T	C	C	rs5030815	bycluster	TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	C	10188322	C	C	10188322	5	2	557	1	0	0	0	0	0	0	1	0	17174	1652	57	3	471	3	VHL	3	10188322	Splice_Site	SNP	T	TCGA-CZ-4856-01A-02D-1429-08		10188322	187834108	11	32606											
FGD5	152273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	14964587	14964587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	14964587	C	T	14964587	3	4	557	1	0	0	0	0	1	0	0	0	5843	652	23	1	3904	1	FGD5	3	14964587	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	4776265	14964587	183057843	12	32607											
EPHA6	285220	broad.mit.edu	37	3	96706398	96706398	+	Silent	SNP	A	G	G	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	G	96706398	G	G	96706398	2	3	557	1	0	0	0	0	0	0	0	1	5173	98	4	3		3	EPHA6	3	96706398	Silent	SNP	A	TCGA-CZ-4856-01A-02D-1429-08	81741811	96706398	101316032	13	32608											
CLSTN2	64084	broad.mit.edu	37	3	140122558	140122558	+	Missense_Mutation	SNP	G	A	A	rs145666342		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	140122558	A	A	140122558	3	1	557	1	0	0	0	0	1	0	0	0	3564	1145	40	1	330	1	CLSTN2	3	140122558	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	43416160	140122558	57899872	14	32609											
FNDC3B	64778	broad.mit.edu	37	3	172096213	172096213	+	Silent	SNP	C	T	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	172096213	T	T	172096213	2	4	557	1	0	0	0	0	0	0	0	1	5977	610	22	2		2	FNDC3B	3	172096213	Silent	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	31973655	172096213	25926217	15	32610											
ACAP2	23527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	195009916	195009916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	195009916	G	A	195009916	3	1	557	1	0	0	0	0	1	0	0	0	119	1029	36	2	240	2	ACAP2	3	195009916	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	22913703	195009916	3012514	16	32611											
PDE6B	5158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	654278	654278	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	G	654278	C	G	654278	3	3	557	1	0	0	0	0	1	0	0	0	11653	507	18	4	1536	4	PDE6B	4	654278	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		654278	190499998	17	32612											
PRKG2	5593	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	82126123	82126123	+	Missense_Mutation	SNP	G	G	A	rs187350442	by1000genomes	TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	82126123	G	A	82126123	3	1	557	1	0	0	0	0	1	0	0	0	12533	1086	38	1	2281	1	PRKG2	4	82126123	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	81471845	82126123	109028153	18	32613											
F11	2160	broad.mit.edu;hgsc.bcm.edu	37	4	187201213	187201213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	187201213	G	A	187201213	3	1	557	1	0	0	0	0	1	0	0	0	5339	1087	38	1	829	1	F11	4	187201213	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	105075090	187201213	3953063	19	32614											
FSTL4	23105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	132736492	132736492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	132736492	C	T	132736492	3	4	557	1	0	0	0	0	1	0	0	0	6086	536	19	1	2233	1	FSTL4	5	132736492	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		132736492	48178768	20	32615											
PCDHGB3	56102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140750994	140750994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	140750994	C	T	140750994	3	4	557	1	0	0	0	0	1	0	0	0	11571	623	22	2	1035	2	PCDHGB3	5	140750994	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	8014502	140750994	40164266	21	32616											
ANXA6	309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150519791	150519791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	150519791	C	T	150519791	3	4	557	1	0	0	0	0	1	0	0	0	722	652	23	1	2085	1	ANXA6	5	150519791	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	9768797	150519791	30395469	22	32617											
HIVEP1	3096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	12120167	12120167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	12120167	G	A	12120167	3	1	557	1	0	0	0	0	1	0	0	0	7193	1000	35	2	149	2	HIVEP1	6	12120167	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08		12120167	158994900	23	32618											
BRPF3	27154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36185716	36185716	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	G	36185716	A	G	36185716	2	3	557	1	0	0	0	0	0	0	0	1	1523	40	2	3		3	BRPF3	6	36185716	Silent	SNP	A	TCGA-CZ-4856-01A-02D-1429-08	24065549	36185716	134929351	24	32619											
BMP5	653	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	55620404	55620404	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	55620404	T	A	55620404	3	1	557	1	0	0	0	0	1	0	0	0	1463	1638	57	5	76	5	BMP5	6	55620404	Missense_Mutation	SNP	T	TCGA-CZ-4856-01A-02D-1429-08	19434688	55620404	115494663	25	32620											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56357198	56357198	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	56357198	G	A	56357198	4	1	557	1	0	0	0	0	0	1	0	0	4785	1328	46	2	2876	2	DST	6	56357198	Nonsense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	736794	56357198	114757869	26	32621											
SLC17A5	26503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	74354149	74354149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	G	74354149	T	G	74354149	3	3	557	1	0	0	0	0	1	0	0	0	14433	1841	64	5	1255	5	SLC17A5	6	74354149	Missense_Mutation	SNP	T	TCGA-CZ-4856-01A-02D-1429-08	17996951	74354149	96760918	27	32622											
IRAK1BP1	134728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	79607842	79607842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	79607842	C	A	79607842	3	1	557	1	0	0	0	0	1	0	0	0	7829	681	24	4	588	4	IRAK1BP1	6	79607842	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	5253693	79607842	91507225	28	32623											
PODXL	5420	broad.mit.edu;hgsc.bcm.edu	37	7	131194125	131194125	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	131194125	C	T	131194125	4	4	557	1	0	0	0	0	0	1	0	0	12187	608	21	2	678	2	PODXL	7	131194125	Nonsense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		131194125	27944538	29	32624											
EIF2C2	27161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	141559213	141559213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	141559213	C	T	141559213	3	4	557	1	0	0	0	0	1	0	0	0	5008	666	23	1	1023	1	EIF2C2	8	141559213	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		141559213	4804809	30	32625											
LY6E	4061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144103076	144103076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	C	144103076	G	C	144103076	3	2	557	1	0	0	0	0	1	0	0	0	9098	1203	42	4	276	4	LY6E	8	144103076	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	2543863	144103076	2260946	31	32626	415	2									
LY6E	4061	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144103077	144103077	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	144103077	C	T	144103077	2	4	557	1	0	0	0	0	0	0	0	1	9098	697	25	2		2	LY6E	8	144103077	Silent	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	1	144103077	2260945	32	32627	415	2									
C9orf131	138724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35044086	35044086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	35044086	C	T	35044086	3	4	557	1	0	0	0	0	1	0	0	0	2459	623	22	2	1482	2	C9orf131	9	35044086	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		35044086	106169345	33	32628											
CCDC109A	0	hgsc.bcm.edu;ucsc.edu	37	10	74645575	74645578	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	-	74645578	GATT	-	74645575	7	5	557	1	0	1	0	1	0	0	0	0	2746	942	33	0	1081	0	CCDC109A	10	74645575	Frame_Shift_Del	DEL	GATT	TCGA-CZ-4856-01A-02D-1429-08		74645575	60889172	34	32629											
PPP1R3C	5507	hgsc.bcm.edu;ucsc.edu	37	10	93389894	93389894	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	-	93389894	G	-	93389894	7	5	557	1	0	1	0	1	0	0	0	0	12383	1368	48	0	213	0	PPP1R3C	10	93389894	Frame_Shift_Del	DEL	G	TCGA-CZ-4856-01A-02D-1429-08	18744319	93389894	42144853	35	32630											
OR5P2	120065	broad.mit.edu;hgsc.bcm.edu	37	11	7818120	7818120	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	7818120	T	A	7818120	3	1	557	1	0	0	0	0	1	0	0	0	11185	1580	55	5	602	5	OR5P2	11	7818120	Missense_Mutation	SNP	T	TCGA-CZ-4856-01A-02D-1429-08		7818120	127188396	36	32631											
C11orf46	0	broad.mit.edu;hgsc.bcm.edu	37	11	30358133	30358133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	30358133	A	T	30358133	3	4	557	1	0	0	0	0	1	0	0	0	1645	304	11	5	584	5	C11orf46	11	30358133	Missense_Mutation	SNP	A	TCGA-CZ-4856-01A-02D-1429-08	22540013	30358133	104648383	37	32632											
GPRC5A	9052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	13061472	13061472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	G	13061472	C	G	13061472	3	3	557	1	0	0	0	0	1	0	0	0	6731	536	19	4	291	4	GPRC5A	12	13061472	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		13061472	120790423	38	32633											
GRIN2B	2904	broad.mit.edu;hgsc.bcm.edu	37	12	13717155	13717155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	G	13717155	C	G	13717155	3	3	557	1	0	0	0	0	1	0	0	0	6787	478	17	4	1441	4	GRIN2B	12	13717155	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	655683	13717155	120134740	39	32634											
CEP290	80184	hgsc.bcm.edu;ucsc.edu	37	12	88471086	88471086	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	-	88471086	A	-	88471086	7	5	557	1	0	1	0	1	0	0	0	0	3255	126	5	0	1873	0	CEP290	12	88471086	Frame_Shift_Del	DEL	A	TCGA-CZ-4856-01A-02D-1429-08	74753931	88471086	45380809	40	32635											
C14orf106	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	45673409	45673409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	45673409	C	T	45673409	3	4	557	1	0	0	0	0	1	0	0	0	1740	855	30	2	100	2	C14orf106	14	45673409	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		45673409	61676131	41	32636											
MUDENG	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	57748924	57748924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	57748924	G	A	57748924	3	1	557	1	0	0	0	0	1	0	0	0	9990	971	34	2	1080	2	MUDENG	14	57748924	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	12075515	57748924	49600616	42	32637											
WDR25	79446	hgsc.bcm.edu;ucsc.edu	37	14	100847481	100847481	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	-	100847481	G	-	100847481	7	5	557	1	0	1	0	1	0	0	0	0	17294	1000	35	0	222	0	WDR25	14	100847481	Frame_Shift_Del	DEL	G	TCGA-CZ-4856-01A-02D-1429-08	43098557	100847481	6502059	43	32638											
RPAP1	26015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41822090	41822090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	41822090	G	A	41822090	3	1	557	1	0	0	0	0	1	0	0	0	13554	1232	43	2	3222	2	RPAP1	15	41822090	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08		41822090	60709302	44	32639											
APH1B	83464	broad.mit.edu;hgsc.bcm.edu	37	15	63569840	63569840	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	63569840	C	T	63569840	2	4	557	1	0	0	0	0	0	0	0	1	772	912	32	2		2	APH1B	15	63569840	Silent	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	21747750	63569840	38961552	45	32640											
ATP2A1	487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	28909648	28909648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	28909648	C	T	28909648	3	4	557	1	0	0	0	0	1	0	0	0	1136	768	27	1	1694	1	ATP2A1	16	28909648	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		28909648	61445105	46	32641											
RSPRY1	89970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57265168	57265168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	C	57265168	T	C	57265168	3	2	557	1	0	0	0	0	1	0	0	0	13726	1464	51	3	1512	3	RSPRY1	16	57265168	Missense_Mutation	SNP	T	TCGA-CZ-4856-01A-02D-1429-08	28355520	57265168	33089585	47	32642											
ZNF594	84622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	5086703	5086703	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	5086703	G	T	5086703	2	4	557	1	0	0	0	0	0	0	0	1	18036	1161	41	4		4	ZNF594	17	5086703	Silent	SNP	G	TCGA-CZ-4856-01A-02D-1429-08		5086703	76108507	48	32643											
SLC13A5	284111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	6594203	6594203	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	6594203	G	A	6594203	2	1	557	1	0	0	0	0	0	0	0	1	14408	1219	43	2		2	SLC13A5	17	6594203	Silent	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	1507500	6594203	74601007	49	32644											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu	37	17	11593688	11593688	+	Nonsense_Mutation	SNP	C	C	T	rs144649934		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	11593688	C	T	11593688	4	4	557	1	0	0	0	0	0	1	0	0	4610	760	27	1	4627	1	DNAH9	17	11593688	Nonsense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	4999485	11593688	69601522	50	32645											
POLDIP2	26073	broad.mit.edu	37	17	26681591	26681591	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	-	26681591	-	-	26681591	7	5	557	1	0	1	0	1	0	0	0	0	12201	127	5	0	878	0	POLDIP2	17	26681591	Frame_Shift_Del	DEL	A	TCGA-CZ-4856-01A-02D-1429-08	15087903	26681591	54513619	51	32646											
AMAC1	0	broad.mit.edu;hgsc.bcm.edu	37	17	33521121	33521121	+	Missense_Mutation	SNP	G	G	A	rs149963193	alternate_allele	TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	33521121	G	A	33521121	3	1	557	1	0	0	0	0	1	0	0	0	559	1059	37	1	814	1	AMAC1	17	33521121	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	6839530	33521121	47674089	52	32647											
SETBP1	26040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	42618593	42618593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	42618593	G	A	42618593	3	1	557	1	0	0	0	0	1	0	0	0	14142	1319	46	2	4351	2	SETBP1	18	42618593	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08		42618593	35458655	53	32648											
LYL1	4066	broad.mit.edu	37	19	13211728	13211728	+	Silent	SNP	C	T	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	13211728	T	T	13211728	2	4	557	1	0	0	0	0	0	0	0	1	9113	755	27	1		1	LYL1	19	13211728	Silent	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		13211728	45917255	54	32649											
CIC	23152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42797181	42797181	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	C	42797181	G	C	42797181	3	2	557	1	0	0	0	0	1	0	0	0	3426	991	35	4	3601	4	CIC	19	42797181	Missense_Mutation	SNP	G	TCGA-CZ-4856-01A-02D-1429-08	29585453	42797181	16331802	55	32650											
ZNF749	388567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57954668	57954668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	C	57954668	A	C	57954668	3	2	557	1	0	0	0	0	1	0	0	0	18143	217	8	5	162	5	ZNF749	19	57954668	Missense_Mutation	SNP	A	TCGA-CZ-4856-01A-02D-1429-08	15157487	57954668	1174315	56	32651											
PTPRT	11122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	40944543	40944543	+	Silent	SNP	C	C	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	40944543	C	A	40944543	2	1	557	1	0	0	0	0	0	0	0	1	12825	842	30	4		4	PTPRT	20	40944543	Silent	SNP	C	TCGA-CZ-4856-01A-02D-1429-08		40944543	22080977	57	32652	416	2									
PTPRT	11122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	40944544	40944544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	40944544	C	A	40944544	3	1	557	1	0	0	0	0	1	0	0	0	12825	652	23	4	2508	4	PTPRT	20	40944544	Missense_Mutation	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	1	40944544	22080976	58	32653	416	2									
GGT5	2687	broad.mit.edu	37	22	24621029	24621029	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	C	24621029	C	C	24621029	3	2	557	1	0	0	0	0	1	0	0	0	6369	1464	51	3	219	3	GGT5	22	24621029	Missense_Mutation	SNP	T	TCGA-CZ-4856-01A-02D-1429-08		24621029	26683537	59	32654											
ARMCX5	64860	broad.mit.edu	37	X	101858509	101858509	+	Silent	SNP	A	T	T	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	T	101858509	T	T	101858509	2	4	557	1	0	0	0	0	0	0	0	1	962	146	6	5		5	ARMCX5	23	101858509	Silent	SNP	A	TCGA-CZ-4856-01A-02D-1429-08		101858509	53412051	60	32655											
GPRASP2	114928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101971084	101971084	+	Silent	SNP	C	C	A	novel		TCGA-CZ-4856-01A-02D-1429-08	TCGA-CZ-4856-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	85e26450-4cb1-4a91-ad86-a6d44890ee97	10b5b613-7abd-42dd-bb9d-a166c34e4222	A	101971084	C	A	101971084	2	1	557	1	0	0	0	0	0	0	0	1	6730	581	21	4		4	GPRASP2	23	101971084	Silent	SNP	C	TCGA-CZ-4856-01A-02D-1429-08	112575	101971084	53299476	61	32656											
UTS2	10911	hgsc.bcm.edu	37	1	7913400	7913400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	7913400	T	A	7913400	3	1	558	1	0	0	0	0	1	0	0	0	17116	1406	49	5	427	5	UTS2	1	7913400	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10		7913400	241337221	1	32657											
MTOR	2475	hgsc.bcm.edu;ucsc.edu	37	1	11189847	11189847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	11189847	A	G	11189847	3	3	558	1	0	0	0	0	1	0	0	0	9961	72	3	3	2063	3	MTOR	1	11189847	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	3276447	11189847	238060774	2	32658	417	2									
MTOR	2475	hgsc.bcm.edu;ucsc.edu	37	1	11189851	11189851	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	11189851	C	T	11189851	2	4	558	1	0	0	0	0	0	0	0	1	9961	680	24	2		2	MTOR	1	11189851	Silent	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	4	11189851	238060770	3	32659	417	2									
ARID1A	8289	hgsc.bcm.edu;ucsc.edu	37	1	27106545	27106545	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	27106545	C	A	27106545	4	1	558	1	0	0	0	0	0	1	0	0	913	805	28	4	6234	4	ARID1A	1	27106545	Nonsense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	15916694	27106545	222144076	4	32660											
LEPRE1	64175	hgsc.bcm.edu;ucsc.edu	37	1	43228105	43228105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	43228105	G	C	43228105	3	2	558	1	0	0	0	0	1	0	0	0	8736	933	33	4	1778	4	LEPRE1	1	43228105	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	16121560	43228105	206022516	5	32661											
ALG14	199857	hgsc.bcm.edu	37	1	95538433	95538433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	95538433	C	G	95538433	3	3	558	1	0	0	0	0	1	0	0	0	516	797	28	4	644	4	ALG14	1	95538433	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	52310328	95538433	153712188	6	32662											
CD101	9398	hgsc.bcm.edu	37	1	117560837	117560837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	117560837	T	C	117560837	3	2	558	1	0	0	0	0	1	0	0	0	2964	1609	56	3	1694	3	CD101	1	117560837	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	22022404	117560837	131689784	7	32663											
NOTCH2	4853	hgsc.bcm.edu;ucsc.edu	37	1	120478185	120478185	+	Missense_Mutation	SNP	C	C	G	rs185917176	by1000genomes;alternate_allele	TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	120478185	C	G	120478185	3	3	558	1	0	0	0	0	1	0	0	0	10555	855	30	4	3902	4	NOTCH2	1	120478185	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	2917348	120478185	128772436	8	32664											
NES	10763	hgsc.bcm.edu	37	1	156642149	156642149	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	156642149	C	G	156642149	3	3	558	1	0	0	0	0	1	0	0	0	10344	478	17	4	3038	4	NES	1	156642149	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	36163964	156642149	92608472	9	32665											
KIAA1614	57710	hgsc.bcm.edu	37	1	180910302	180910302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	180910302	G	A	180910302	3	1	558	1	0	0	0	0	1	0	0	0	8255	1232	43	2	3066	2	KIAA1614	1	180910302	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	24268153	180910302	68340319	10	32666											
PTGS2	5743	hgsc.bcm.edu;ucsc.edu	37	1	186646828	186646828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	186646828	T	C	186646828	3	2	558	1	0	0	0	0	1	0	0	0	12767	1667	58	3	1246	3	PTGS2	1	186646828	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	5736526	186646828	62603793	11	32667											
PIK3C2B	5287	hgsc.bcm.edu	37	1	204397328	204397328	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	204397328	G	C	204397328	3	2	558	1	0	0	0	0	1	0	0	0	11917	933	33	4	501	4	PIK3C2B	1	204397328	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	17750500	204397328	44853293	12	32668											
PSEN2	5664	hgsc.bcm.edu;ucsc.edu	37	1	227076606	227076606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	227076606	G	A	227076606	3	1	558	1	0	0	0	0	1	0	0	0	12661	1232	43	2	661	2	PSEN2	1	227076606	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	22679278	227076606	22174015	13	32669											
EPC2	26122	hgsc.bcm.edu;ucsc.edu	37	2	149519487	149519487	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	149519487	T	A	149519487	3	1	558	1	0	0	0	0	1	0	0	0	5163	1725	60	5	821	5	EPC2	2	149519487	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10		149519487	93679886	14	32670											
DPP4	1803	hgsc.bcm.edu;ucsc.edu	37	2	162865775	162865775	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	162865775	G	A	162865775	2	1	558	1	0	0	0	0	0	0	0	1	4731	1368	48	2		2	DPP4	2	162865775	Silent	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	13346288	162865775	80333598	15	32671											
CPS1	1373	hgsc.bcm.edu;ucsc.edu	37	2	211541841	211541841	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	211541841	C	G	211541841	3	3	558	1	0	0	0	0	1	0	0	0	3825	681	24	4	4553	4	CPS1	2	211541841	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	48676066	211541841	31657532	16	32672											
SERPINE2	5270	hgsc.bcm.edu;ucsc.edu	37	2	224862980	224862980	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	224862980	G	A	224862980	2	1	558	1	0	0	0	0	0	0	0	1	14125	1103	39	1		1	SERPINE2	2	224862980	Silent	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	13321139	224862980	18336393	17	32673											
HDLBP	3069	hgsc.bcm.edu;ucsc.edu	37	2	242179477	242179477	+	Missense_Mutation	SNP	C	C	T	rs143103039		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	242179477	C	T	242179477	3	4	558	1	0	0	0	0	1	0	0	0	7032	652	23	1	1620	1	HDLBP	2	242179477	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	17316497	242179477	1019896	18	32674											
KIF15	56992	hgsc.bcm.edu;ucsc.edu	37	3	44816879	44816879	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	44816879	G	T	44816879	4	4	558	1	0	0	0	0	0	1	0	0	8284	1291	45	4	206	4	KIF15	3	44816879	Nonsense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10		44816879	153205551	19	32675											
PLXNB1	5364	hgsc.bcm.edu	37	3	48460339	48460339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	48460339	C	T	48460339	3	4	558	1	0	0	0	0	1	0	0	0	12130	710	25	2	3569	2	PLXNB1	3	48460339	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	3643460	48460339	149562091	20	32676											
TCTA	6988	hgsc.bcm.edu;ucsc.edu	37	3	49450062	49450062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	49450062	A	C	49450062	3	2	558	1	0	0	0	0	1	0	0	0	15728	449	16	5	205	5	TCTA	3	49450062	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	989723	49450062	148572368	21	32677											
COL6A6	131873	hgsc.bcm.edu;ucsc.edu	37	3	130289877	130289877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	130289877	A	G	130289877	3	3	558	1	0	0	0	0	1	0	0	0	3705	101	4	3	2639	3	COL6A6	3	130289877	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	80839815	130289877	67732553	22	32678											
CCDC39	339829	hgsc.bcm.edu;ucsc.edu	37	3	180349355	180349355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	180349355	T	C	180349355	3	2	558	1	0	0	0	0	1	0	0	0	2813	1763	61	3	953	3	CCDC39	3	180349355	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	50059478	180349355	17673075	23	32679											
ATP13A4	84239	hgsc.bcm.edu	37	3	193174889	193174889	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	193174889	C	T	193174889	2	4	558	1	0	0	0	0	0	0	0	1	1126	697	25	2		2	ATP13A4	3	193174889	Silent	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	12825534	193174889	4847541	24	32680											
SRP72	6731	hgsc.bcm.edu	37	4	57335832	57335832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	57335832	C	A	57335832	3	1	558	1	0	0	0	0	1	0	0	0	15169	477	17	4	129	4	SRP72	4	57335832	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10		57335832	133818444	25	32681											
SEC24D	9871	hgsc.bcm.edu;ucsc.edu	37	4	119736750	119736750	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	119736750	T	A	119736750	3	1	558	1	0	0	0	0	1	0	0	0	14010	1696	59	5	2645	5	SEC24D	4	119736750	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	62400918	119736750	71417526	26	32682											
PIK3R1	5295	hgsc.bcm.edu;ucsc.edu	37	5	67589208	67589208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	67589208	G	A	67589208	3	1	558	1	0	0	0	0	1	0	0	0	11925	1029	36	2	1360	2	PIK3R1	5	67589208	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10		67589208	113326052	27	32683											
CAMK4	814	hgsc.bcm.edu;ucsc.edu	37	5	110712609	110712609	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	110712609	G	C	110712609	3	2	558	1	0	0	0	0	1	0	0	0	2607	943	33	4	369	4	CAMK4	5	110712609	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	43123401	110712609	70202651	28	32684											
COMMD10	51397	hgsc.bcm.edu;ucsc.edu	37	5	115469775	115469775	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	115469775	T	A	115469775	3	1	558	1	0	0	0	0	1	0	0	0	3717	1725	60	5	428	5	COMMD10	5	115469775	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	4757166	115469775	65445485	29	32685											
GPX3	2878	hgsc.bcm.edu	37	5	150407659	150407659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	150407659	C	T	150407659	3	4	558	1	0	0	0	0	1	0	0	0	6748	759	27	1	667	1	GPX3	5	150407659	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	34937884	150407659	30507601	30	32686											
ADAM19	8728	hgsc.bcm.edu	37	5	156997963	156997963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	156997963	C	A	156997963	3	1	558	1	0	0	0	0	1	0	0	0	240	796	28	4	2724	4	ADAM19	5	156997963	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	6590304	156997963	23917297	31	32687											
HIST1H1C	3006	hgsc.bcm.edu;ucsc.edu	37	6	26056471	26056471	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	26056471	C	T	26056471	2	4	558	1	0	0	0	0	0	0	0	1	7131	813	29	2		2	HIST1H1C	6	26056471	Silent	SNP	C	TCGA-CZ-4857-01A-01D-1373-10		26056471	145058596	32	32688											
AHI1	54806	hgsc.bcm.edu;ucsc.edu	37	6	135644325	135644325	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	135644325	A	C	135644325	3	2	558	1	0	0	0	0	1	0	0	0	413	243	9	5	307	5	AHI1	6	135644325	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	109587854	135644325	35470742	33	32689											
SYNE1	23345	hgsc.bcm.edu;ucsc.edu	37	6	152639292	152639292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	152639292	T	G	152639292	3	3	558	1	0	0	0	0	1	0	0	0	15457	1609	56	5	10214	5	SYNE1	6	152639292	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	16994967	152639292	18475775	34	32690											
FBXO5	26271	hgsc.bcm.edu;ucsc.edu	37	6	153294238	153294238	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	153294238	G	C	153294238	3	2	558	1	0	0	0	0	1	0	0	0	5765	1164	41	4	503	4	FBXO5	6	153294238	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	654946	153294238	17820829	35	32691											
DLL1	28514	hgsc.bcm.edu	37	6	170592784	170592784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	170592784	G	T	170592784	3	4	558	1	0	0	0	0	1	0	0	0	4568	1087	38	4	600	4	DLL1	6	170592784	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	17298546	170592784	522283	36	32692											
EIF4H	7458	hgsc.bcm.edu	37	7	73604047	73604047	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	73604047	G	C	73604047	3	2	558	1	0	0	0	0	1	0	0	0	5041	971	34	4	302	4	EIF4H	7	73604047	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10		73604047	85534616	37	32693											
SAMD9	54809	hgsc.bcm.edu;ucsc.edu	37	7	92735216	92735216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	92735216	A	C	92735216	3	2	558	1	0	0	0	0	1	0	0	0	13839	242	9	5	4578	5	SAMD9	7	92735216	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	19131169	92735216	66403447	38	32694											
SMO	6608	hgsc.bcm.edu	37	7	128848598	128848598	+	Splice_Site	SNP	A	A	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	128848598	A	T	128848598	5	4	558	1	0	0	0	0	0	0	1	0	14813	202	7	5	1289	5	SMO	7	128848598	Splice_Site	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	36113382	128848598	30290065	39	32695											
SSPO	23145	hgsc.bcm.edu	37	7	149512019	149512019	+	Silent	SNP	C	C	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	149512019	C	G	149512019	2	3	558	1	0	0	0	0	0	0	0	1	15201	581	21	4		4	SSPO	7	149512019	Silent	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	20663421	149512019	9626644	40	32696											
MLL3	58508	hgsc.bcm.edu;ucsc.edu	37	7	151848093	151848093	+	Splice_Site	SNP	C	C	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	151848093	C	G	151848093	5	3	558	1	0	0	0	0	0	0	1	0	9629	695	24	4	2105	4	MLL3	7	151848093	Splice_Site	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	2336074	151848093	7290570	41	32697											
VPS13B	157680	hgsc.bcm.edu	37	8	100832149	100832149	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	100832149	G	A	100832149	2	1	558	1	0	0	0	0	0	0	0	1	17202	1188	41	2		2	VPS13B	8	100832149	Silent	SNP	G	TCGA-CZ-4857-01A-01D-1373-10		100832149	45531873	42	32698											
SPTAN1	6709	hgsc.bcm.edu;ucsc.edu	37	9	131374049	131374049	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	131374049	G	A	131374049	2	1	558	1	0	0	0	0	0	0	0	1	15129	1161	41	2		2	SPTAN1	9	131374049	Silent	SNP	G	TCGA-CZ-4857-01A-01D-1373-10		131374049	9839382	43	32699	418	2									
SPTAN1	6709	hgsc.bcm.edu;ucsc.edu	37	9	131374053	131374053	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	131374053	C	G	131374053	3	3	558	1	0	0	0	0	1	0	0	0	15129	652	23	4	4980	4	SPTAN1	9	131374053	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	4	131374053	9839378	44	32700	418	2									
VAV2	7410	hgsc.bcm.edu	37	9	136633699	136633699	+	Missense_Mutation	SNP	G	G	C	rs61751477	bycluster;byfrequency;by1000genomes	TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	136633699	G	C	136633699	3	2	558	1	0	0	0	0	1	0	0	0	17144	1048	37	4	190	4	VAV2	9	136633699	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	5259646	136633699	4579732	45	32701											
TACR2	6865	hgsc.bcm.edu;ucsc.edu	37	10	71166860	71166860	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	71166860	G	T	71166860	2	4	558	1	0	0	0	0	0	0	0	1	15518	932	33	4		4	TACR2	10	71166860	Silent	SNP	G	TCGA-CZ-4857-01A-01D-1373-10		71166860	64367887	46	32702											
GRID1	2894	hgsc.bcm.edu;ucsc.edu	37	10	87379671	87379671	+	Silent	SNP	C	C	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	87379671	C	A	87379671	2	1	558	1	0	0	0	0	0	0	0	1	6778	842	30	4		4	GRID1	10	87379671	Silent	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	16212811	87379671	48155076	47	32703											
COL17A1	1308	hgsc.bcm.edu;ucsc.edu	37	10	105815754	105815755	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	-	105815755	CT	-	105815754	7	5	558	1	0	1	0	1	0	0	0	0	3676	680	24	0	3176	0	COL17A1	10	105815754	Frame_Shift_Del	DEL	CT	TCGA-CZ-4857-01A-01D-1373-10	18436083	105815754	29718993	48	32704											
SLC17A6	57084	hgsc.bcm.edu;ucsc.edu	37	11	22381043	22381043	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	22381043	C	G	22381043	3	3	558	1	0	0	0	0	1	0	0	0	14434	903	32	4	557	4	SLC17A6	11	22381043	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10		22381043	112625473	49	32705											
RCOR2	283248	hgsc.bcm.edu	37	11	63681731	63681731	+	Splice_Site	SNP	A	A	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	63681731	A	T	63681731	5	4	558	1	0	0	0	0	0	0	1	0	13196	173	6	5	918	5	RCOR2	11	63681731	Splice_Site	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	41300688	63681731	71324785	50	32706											
GPR137	56834	hgsc.bcm.edu;ucsc.edu	37	11	64054436	64054436	+	Splice_Site	SNP	G	G	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	64054436	G	C	64054436	5	2	558	1	0	0	0	0	0	0	1	0	6652	1014	35	4	545	4	GPR137	11	64054436	Splice_Site	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	372705	64054436	70952080	51	32707	419	2									
GPR137	56834	hgsc.bcm.edu;ucsc.edu	37	11	64054443	64054443	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	64054443	T	G	64054443	3	3	558	1	0	0	0	0	1	0	0	0	6652	1725	60	5	552	5	GPR137	11	64054443	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	7	64054443	70952073	52	32708	419	2									
CHORDC1	26973	hgsc.bcm.edu	37	11	89956063	89956063	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	89956063	G	A	89956063	2	1	558	1	0	0	0	0	0	0	0	1	3367	1103	39	1		1	CHORDC1	11	89956063	Silent	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	25901620	89956063	45050453	53	32709											
OR8B12	219858	hgsc.bcm.edu;ucsc.edu	37	11	124412848	124412848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	124412848	T	G	124412848	3	3	558	1	0	0	0	0	1	0	0	0	11233	1821	63	5	231	5	OR8B12	11	124412848	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	34456785	124412848	10593668	54	32710											
CLSTN3	9746	hgsc.bcm.edu;ucsc.edu	37	12	7288128	7288128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	7288128	G	A	7288128	3	1	558	1	0	0	0	0	1	0	0	0	3565	1290	45	2	603	2	CLSTN3	12	7288128	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10		7288128	126563767	55	32711											
TMEM117	84216	hgsc.bcm.edu;ucsc.edu	37	12	44782260	44782260	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	44782260	A	G	44782260	2	3	558	1	0	0	0	0	0	0	0	1	16043	291	11	3		3	TMEM117	12	44782260	Silent	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	37494132	44782260	89069635	56	32712											
KRT73	319101	hgsc.bcm.edu;ucsc.edu	37	12	53009994	53009994	+	Silent	SNP	C	C	T	rs139888404		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	53009994	C	T	53009994	2	4	558	1	0	0	0	0	0	0	0	1	8493	639	23	1		1	KRT73	12	53009994	Silent	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	8227734	53009994	80841901	57	32713											
PCBP2	5094	hgsc.bcm.edu;ucsc.edu	37	12	53865471	53865471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	53865471	G	A	53865471	3	1	558	1	0	0	0	0	1	0	0	0	11508	1145	40	1	994	1	PCBP2	12	53865471	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	855477	53865471	79986424	58	32714											
TPH2	121278	hgsc.bcm.edu;ucsc.edu	37	12	72425132	72425132	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	72425132	T	G	72425132	3	3	558	1	0	0	0	0	1	0	0	0	16414	1841	64	5	1297	5	TPH2	12	72425132	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	18559661	72425132	61426763	59	32715											
ARL1	400	hgsc.bcm.edu;ucsc.edu	37	12	101790252	101790252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	101790252	G	C	101790252	3	2	558	1	0	0	0	0	1	0	0	0	925	1203	42	4	113	4	ARL1	12	101790252	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	29365120	101790252	32061643	60	32716											
EP400	57634	hgsc.bcm.edu	37	12	132505639	132505639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	132505639	T	C	132505639	3	2	558	1	0	0	0	0	1	0	0	0	5151	1841	64	3	4546	3	EP400	12	132505639	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	30715387	132505639	1346256	61	32717											
ZNF268	10795	hgsc.bcm.edu;ucsc.edu	37	12	133779908	133779908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	133779908	C	T	133779908	3	4	558	1	0	0	0	0	1	0	0	0	17819	478	17	2		2	ZNF268	12	133779908	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	1274269	133779908	71987	62	32718											
EML5	161436	hgsc.bcm.edu;ucsc.edu	37	14	89128141	89128141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	89128141	C	A	89128141	3	1	558	1	0	0	0	0	1	0	0	0	5102	478	17	4	2477	4	EML5	14	89128141	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10		89128141	18221399	63	32719											
HERC2	8924	hgsc.bcm.edu	37	15	28366558	28366558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	28366558	T	G	28366558	3	3	558	1	0	0	0	0	1	0	0	0	7065	1606	56	5	1330	5	HERC2	15	28366558	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10		28366558	74164834	64	32720											
SPRED1	161742	hgsc.bcm.edu;ucsc.edu	37	15	38632059	38632059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	38632059	A	G	38632059	3	3	558	1	0	0	0	0	1	0	0	0	15104	101	4	3	563	3	SPRED1	15	38632059	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	10265501	38632059	63899333	65	32721											
SECISBP2L	9728	hgsc.bcm.edu;ucsc.edu	37	15	49284777	49284777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	49284777	T	A	49284777	3	1	558	1	0	0	0	0	1	0	0	0	14020	1606	56	5	339	5	SECISBP2L	15	49284777	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	10652718	49284777	53246615	66	32722											
TBC1D21	161514	hgsc.bcm.edu;ucsc.edu	37	15	74174089	74174089	+	Splice_Site	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	74174089	G	A	74174089	5	1	558	1	0	0	0	0	0	0	1	0	15622	1275	44	2	283	2	TBC1D21	15	74174089	Splice_Site	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	24889312	74174089	28357303	67	32723											
ARNT2	9915	hgsc.bcm.edu;ucsc.edu	37	15	80762590	80762590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	80762590	C	T	80762590	3	4	558	1	0	0	0	0	1	0	0	0	966	527	19	1	240	1	ARNT2	15	80762590	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	6588501	80762590	21768802	68	32724											
SMG1	23049	hgsc.bcm.edu;ucsc.edu	37	16	18844384	18844384	+	Silent	SNP	A	A	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	18844384	A	T	18844384	2	4	558	1	0	0	0	0	0	0	0	1	14808	349	13	5		5	SMG1	16	18844384	Silent	SNP	A	TCGA-CZ-4857-01A-01D-1373-10		18844384	71510369	69	32725											
TBC1D10B	26000	hgsc.bcm.edu	37	16	30370551	30370551	+	Silent	SNP	G	G	A	rs113035492	bycluster	TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	30370551	G	A	30370551	2	1	558	1	0	0	0	0	0	0	0	1	15611	1049	37	1		1	TBC1D10B	16	30370551	Silent	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	11526167	30370551	59984202	70	32726											
FAM92B	339145	hgsc.bcm.edu;ucsc.edu	37	16	85135890	85135890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	85135890	G	A	85135890	3	1	558	1	0	0	0	0	1	0	0	0	5660	1203	42	2	345	2	FAM92B	16	85135890	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	54765339	85135890	5218863	71	32727											
ASPA	443	hgsc.bcm.edu;ucsc.edu	37	17	3392558	3392558	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	3392558	G	C	3392558	3	2	558	1	0	0	0	0	1	0	0	0	1050	1261	44	4	570	4	ASPA	17	3392558	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10		3392558	77802652	72	32728											
LLGL1	3996	hgsc.bcm.edu	37	17	18136083	18136083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	18136083	A	G	18136083	3	3	558	1	0	0	0	0	1	0	0	0	8840	188	7	3	373	3	LLGL1	17	18136083	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	14743525	18136083	63059127	73	32729											
GIT1	28964	hgsc.bcm.edu	37	17	27902653	27902656	+	Frame_Shift_Del	DEL	CAGT	CAGT	-	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	CAGT	CAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	-	27902656	CAGT	-	27902653	7	5	558	1	0	1	0	1	0	0	0	0	6403	697	25	0	480	0	GIT1	17	27902653	Frame_Shift_Del	DEL	CAGT	TCGA-CZ-4857-01A-01D-1373-10	9766570	27902653	53292557	74	32730											
EPN3	55040	hgsc.bcm.edu;ucsc.edu	37	17	48618639	48618639	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	48618639	G	A	48618639	2	1	558	1	0	0	0	0	0	0	0	1	5189	933	33	2		2	EPN3	17	48618639	Silent	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	20715986	48618639	32576571	75	32731											
MYO5B	4645	hgsc.bcm.edu;ucsc.edu	37	18	47369724	47369724	+	Missense_Mutation	SNP	G	G	T	rs67244969	bycluster;by1000genomes	TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	47369724	G	T	47369724	3	4	558	1	0	0	0	0	1	0	0	0	10086	942	33	4	1076	4	MYO5B	18	47369724	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10		47369724	30707524	76	32732											
ADAMTS10	81794	hgsc.bcm.edu	37	19	8660979	8660979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	8660979	C	T	8660979	3	4	558	1	0	0	0	0	1	0	0	0	256	826	29	2	2060	2	ADAMTS10	19	8660979	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10		8660979	50468004	77	32733											
NOTCH3	4854	hgsc.bcm.edu	37	19	15298776	15298776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	15298776	C	T	15298776	3	4	558	1	0	0	0	0	1	0	0	0	10557	536	19	1	5539	1	NOTCH3	19	15298776	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	6637797	15298776	43830207	78	32734											
OR10H2	26538	hgsc.bcm.edu;ucsc.edu	37	19	15839750	15839750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	15839750	G	T	15839750	3	4	558	1	0	0	0	0	1	0	0	0	10913	991	35	4	899	4	OR10H2	19	15839750	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	540974	15839750	43289233	79	32735											
FAM129C	199786	hgsc.bcm.edu	37	19	17662616	17662616	+	Missense_Mutation	SNP	G	G	A	rs76629753	bycluster;byfrequency;by1000genomes	TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	17662616	G	A	17662616	3	1	558	1	0	0	0	0	1	0	0	0	5442	1116	39	1	1927	1	FAM129C	19	17662616	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	1822866	17662616	41466367	80	32736											
FCGRT	2217	hgsc.bcm.edu	37	19	50017140	50017140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	50017140	A	C	50017140	3	2	558	1	0	0	0	0	1	0	0	0	5793	28	1	5	81	5	FCGRT	19	50017140	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	32354524	50017140	9111843	81	32737											
MED25	81857	hgsc.bcm.edu	37	19	50333063	50333063	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	50333063	T	C	50333063	2	2	558	1	0	0	0	0	0	0	0	1	9450	1800	63	3		3	MED25	19	50333063	Silent	SNP	T	TCGA-CZ-4857-01A-01D-1373-10	315923	50333063	8795920	82	32738											
ZNF473	25888	hgsc.bcm.edu;ucsc.edu	37	19	50550173	50550173	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	50550173	C	G	50550173	3	3	558	1	0	0	0	0	1	0	0	0	17943	681	24	4	2487	4	ZNF473	19	50550173	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	217110	50550173	8578810	83	32739											
C19orf63	0	hgsc.bcm.edu	37	19	50985427	50985427	+	Missense_Mutation	SNP	G	G	A	rs147229320		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	50985427	G	A	50985427	3	1	558	1	0	0	0	0	1	0	0	0	1947	1145	40	1	817	1	C19orf63	19	50985427	Missense_Mutation	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	435254	50985427	8143556	84	32740											
SIGLEC10	89790	hgsc.bcm.edu;ucsc.edu	37	19	51920109	51920109	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	51920109	A	C	51920109	3	2	558	1	0	0	0	0	1	0	0	0	14319	217	8	5	1612	5	SIGLEC10	19	51920109	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	934682	51920109	7208874	85	32741											
NLRP12	91662	hgsc.bcm.edu	37	19	54312936	54312936	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	54312936	G	A	54312936	2	1	558	1	0	0	0	0	0	0	0	1	10481	1078	38	1		1	NLRP12	19	54312936	Silent	SNP	G	TCGA-CZ-4857-01A-01D-1373-10	2392827	54312936	4816047	86	32742											
NDUFA3	4696	hgsc.bcm.edu	37	19	54610140	54610140	+	Missense_Mutation	SNP	C	C	G	rs144531279	alternate_allele	TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	54610140	C	G	54610140	3	3	558	1	0	0	0	0	1	0	0	0	10272	477	17	4	200	4	NDUFA3	19	54610140	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	297204	54610140	4518843	87	32743											
TMX4	56255	hgsc.bcm.edu	37	20	7962927	7962927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	7962927	T	C	7962927	3	2	558	1	0	0	0	0	1	0	0	0	16281	1763	61	3	32	3	TMX4	20	7962927	Missense_Mutation	SNP	T	TCGA-CZ-4857-01A-01D-1373-10		7962927	55062593	88	32744											
MC3R	4159	hgsc.bcm.edu;ucsc.edu	37	20	54824473	54824473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	54824473	C	A	54824473	3	1	558	1	0	0	0	0	1	0	0	0	9372	681	24	4	576	4	MC3R	20	54824473	Missense_Mutation	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	46861546	54824473	8201047	89	32745											
DGCR8	54487	hgsc.bcm.edu;ucsc.edu	37	22	20074764	20074764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	20074764	A	G	20074764	3	3	558	1	0	0	0	0	1	0	0	0	4466	449	16	3	806	3	DGCR8	22	20074764	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10		20074764	31229802	90	32746											
SGSM1	129049	hgsc.bcm.edu;ucsc.edu	37	22	25294340	25294340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	T	25294340	A	T	25294340	3	4	558	1	0	0	0	0	1	0	0	0	14235	11	1	5	2667	5	SGSM1	22	25294340	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	5219576	25294340	26010226	91	32747											
ARSD	414	hgsc.bcm.edu	37	X	2832696	2832696	+	Silent	SNP	T	T	C	rs113031742	bycluster;by1000genomes	TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	C	2832696	T	C	2832696	2	2	558	1	0	0	0	0	0	0	0	1	989	1567	55	3		3	ARSD	23	2832696	Silent	SNP	T	TCGA-CZ-4857-01A-01D-1373-10		2832696	152437864	92	32748											
TBL1X	6907	hgsc.bcm.edu;ucsc.edu	37	X	9660211	9660211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	G	9660211	A	G	9660211	3	3	558	1	0	0	0	0	1	0	0	0	15651	159	6	3	830	3	TBL1X	23	9660211	Missense_Mutation	SNP	A	TCGA-CZ-4857-01A-01D-1373-10	6827515	9660211	145610349	93	32749											
MAGEC1	9947	hgsc.bcm.edu	37	X	140993877	140993877	+	Silent	SNP	C	C	A	rs176039	bycluster;byfrequency	TCGA-CZ-4857-01A-01D-1373-10	TCGA-CZ-4857-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	45c7eea2-42be-4cc7-b658-9cb273fae580	a465c09a-09bc-4057-a658-e29daf498813	A	140993877	C	A	140993877	2	1	558	1	0	0	0	0	0	0	0	1	9187	610	22	4		4	MAGEC1	23	140993877	Silent	SNP	C	TCGA-CZ-4857-01A-01D-1373-10	131333666	140993877	14276683	94	32750											
KLHL21	9903	hgsc.bcm.edu	37	1	6661906	6661906	+	Silent	SNP	C	C	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	6661906	C	A	6661906	2	1	559	1	0	0	0	0	0	0	0	1	8383	581	21	4		4	KLHL21	1	6661906	Silent	SNP	C	TCGA-CZ-4858-01A-01D-1373-10		6661906	242588715	1	32751											
ZNF644	84146	hgsc.bcm.edu;ucsc.edu	37	1	91405509	91405509	+	Missense_Mutation	SNP	T	T	C	rs146329330		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	91405509	T	C	91405509	3	2	559	1	0	0	0	0	1	0	0	0	18072	1435	50	3	2597	3	ZNF644	1	91405509	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	84743603	91405509	157845112	2	32752			1	66		2	2	28	N	T_C	5.930681e-05
ZNF644	84146	hgsc.bcm.edu;ucsc.edu	37	1	91405536	91405536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	91405536	C	A	91405536	3	1	559	1	0	0	0	0	1	0	0	0	18072	913	32	4	2624	4	ZNF644	1	91405536	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	27	91405536	157845085	3	32753			1	66		2	2	28	N	T_C	5.930681e-05
TMOD4	29765	hgsc.bcm.edu;ucsc.edu	37	1	151143913	151143913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	151143913	G	A	151143913	3	1	559	1	0	0	0	0	1	0	0	0	16248	1203	42	2	331	2	TMOD4	1	151143913	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	59738377	151143913	98106708	4	32754											
ASH1L	55870	hgsc.bcm.edu;ucsc.edu	37	1	155319244	155319244	+	Silent	SNP	A	A	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	155319244	A	T	155319244	2	4	559	1	0	0	0	0	0	0	0	1	1041	175	7	5		5	ASH1L	1	155319244	Silent	SNP	A	TCGA-CZ-4858-01A-01D-1373-10	4175331	155319244	93931377	5	32755											
ERO1LB	56605	hgsc.bcm.edu	37	1	236389662	236389662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	236389662	T	G	236389662	3	3	559	1	0	0	0	0	1	0	0	0	5242	1406	49	5	464	5	ERO1LB	1	236389662	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	81070418	236389662	12860959	6	32756											
SNTG2	54221	hgsc.bcm.edu;ucsc.edu	37	2	1204903	1204903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	1204903	A	C	1204903	3	2	559	1	0	0	0	0	1	0	0	0	14888	43	2	5	740	5	SNTG2	2	1204903	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10		1204903	241994470	7	32757											
PUM2	23369	hgsc.bcm.edu;ucsc.edu	37	2	20478380	20478380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	20478380	G	T	20478380	3	4	559	1	0	0	0	0	1	0	0	0	12839	1029	36	4	1309	4	PUM2	2	20478380	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	19273477	20478380	222720993	8	32758											
DNAJC5G	285126	hgsc.bcm.edu;ucsc.edu	37	2	27500630	27500630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	27500630	C	T	27500630	3	4	559	1	0	0	0	0	1	0	0	0	4654	710	25	2	128	2	DNAJC5G	2	27500630	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	7022250	27500630	215698743	9	32759											
SULT6B1	391365	hgsc.bcm.edu;ucsc.edu	37	2	37410624	37410624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	37410624	C	T	37410624	3	4	559	1	0	0	0	0	1	0	0	0	15396	739	26	2	585	2	SULT6B1	2	37410624	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	9909994	37410624	205788749	10	32760											
SF3B1	23451	hgsc.bcm.edu	37	2	198266832	198266832	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	198266832	T	C	198266832	2	2	559	1	0	0	0	0	0	0	0	1	14162	1606	56	3		3	SF3B1	2	198266832	Silent	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	160856208	198266832	44932541	11	32761											
ANO7	50636	hgsc.bcm.edu	37	2	242135132	242135132	+	Missense_Mutation	SNP	G	G	A	rs149691575		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	242135132	G	A	242135132	3	1	559	1	0	0	0	0	1	0	0	0	702	1145	40	1	357	1	ANO7	2	242135132	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	43868300	242135132	1064241	12	32762											
DOCK3	1795	hgsc.bcm.edu	37	3	51400102	51400102	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	51400102	C	T	51400102	4	4	559	1	0	0	0	0	0	1	0	0	4690	644	23	1	5484	1	DOCK3	3	51400102	Nonsense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10		51400102	146622328	13	32763											
FAM19A1	407738	hgsc.bcm.edu	37	3	68466561	68466561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	68466561	T	C	68466561	3	2	559	1	0	0	0	0	1	0	0	0	5535	1812	63	3	256	3	FAM19A1	3	68466561	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	17066459	68466561	129555869	14	32764											
AP2M1	1173	hgsc.bcm.edu;ucsc.edu	37	3	183899959	183899959	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	183899959	G	T	183899959	2	4	559	1	0	0	0	0	0	0	0	1	742	1277	45	4		4	AP2M1	3	183899959	Silent	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	115433398	183899959	14122471	15	32765											
FGFR3	2261	hgsc.bcm.edu	37	4	1806217	1806217	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	1806217	C	T	1806217	2	4	559	1	0	0	0	0	0	0	0	1	5874	477	17	2		2	FGFR3	4	1806217	Silent	SNP	C	TCGA-CZ-4858-01A-01D-1373-10		1806217	189348059	16	32766											
MARCH1	55016	hgsc.bcm.edu	37	4	164449988	164449988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	164449988	T	G	164449988	3	3	559	1	0	0	0	0	1	0	0	0	9305	1841	64	5	91	5	MARCH1	4	164449988	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	162643771	164449988	26704288	17	32767											
KLHL3	26249	hgsc.bcm.edu;ucsc.edu	37	5	136963990	136963990	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	136963990	G	A	136963990	2	1	559	1	0	0	0	0	0	0	0	1	8390	1136	40	1		1	KLHL3	5	136963990	Silent	SNP	G	TCGA-CZ-4858-01A-01D-1373-10		136963990	43951270	18	32768											
PPARGC1B	133522	hgsc.bcm.edu	37	5	149210396	149210396	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	-	149210396	G	-	149210396	7	5	559	1	0	1	0	1	0	0	0	0	12308	1087	38	0	553	0	PPARGC1B	5	149210396	Frame_Shift_Del	DEL	G	TCGA-CZ-4858-01A-01D-1373-10	12246406	149210396	31704864	19	32769											
TCOF1	6949	hgsc.bcm.edu	37	5	149776067	149776067	+	Missense_Mutation	SNP	A	A	G	rs55980697	bycluster;byfrequency;by1000genomes	TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	149776067	A	G	149776067	3	3	559	1	0	0	0	0	1	0	0	0	15720	72	3	3	4123	3	TCOF1	5	149776067	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10	565671	149776067	31139193	20	32770											
SLIT3	6586	hgsc.bcm.edu	37	5	168138034	168138034	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	168138034	T	A	168138034	3	1	559	1	0	0	0	0	1	0	0	0	14754	1667	58	5	2034	5	SLIT3	5	168138034	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	18361967	168138034	12777226	21	32771											
ZNF354C	30832	hgsc.bcm.edu;ucsc.edu	37	5	178504125	178504125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	178504125	C	A	178504125	3	1	559	1	0	0	0	0	1	0	0	0	17878	855	30	4	218	4	ZNF354C	5	178504125	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	10366091	178504125	2411135	22	32772											
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32634306	32634306	+	Missense_Mutation	SNP	A	A	T	rs1049060	bycluster;byfrequency	TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	32634306	A	T	32634306	3	4	559	1	0	0	0	0	1	0	0	0	7213	304	11	5	726	5	HLA-DQB1	6	32634306	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10		32634306	138480761	23	32773											
AKAP9	10142	hgsc.bcm.edu	37	7	91700229	91700229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	91700229	G	A	91700229	3	1	559	1	0	0	0	0	1	0	0	0	459	1058	37	1	6628	1	AKAP9	7	91700229	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10		91700229	67438434	24	32774											
ARPC1B	10095	hgsc.bcm.edu;ucsc.edu	37	7	98984318	98984318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	98984318	C	G	98984318	3	3	559	1	0	0	0	0	1	0	0	0	970	903	32	4	81	4	ARPC1B	7	98984318	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	7284089	98984318	60154345	25	32775											
WDR91	29062	hgsc.bcm.edu;ucsc.edu	37	7	134894458	134894458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	134894458	A	G	134894458	3	3	559	1	0	0	0	0	1	0	0	0	17350	131	5	3	2126	3	WDR91	7	134894458	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10	35910140	134894458	24244205	26	32776											
ABP1	26	hgsc.bcm.edu;ucsc.edu	37	7	150554954	150554954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	150554954	G	A	150554954	3	1	559	1	0	0	0	0	1	0	0	0	98	1174	41	2	1398	2	ABP1	7	150554954	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	15660496	150554954	8583709	27	32777											
ERICH1	157697	hgsc.bcm.edu	37	8	623641	623641	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	623641	A	G	623641	2	3	559	1	0	0	0	0	0	0	0	1	5232	407	15	3		3	ERICH1	8	623641	Silent	SNP	A	TCGA-CZ-4858-01A-01D-1373-10		623641	145740381	28	32778											
ZNF16	7564	hgsc.bcm.edu	37	8	146157099	146157099	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	146157099	G	A	146157099	2	1	559	1	0	0	0	0	0	0	0	1	17750	1281	45	2		2	ZNF16	8	146157099	Silent	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	145533458	146157099	206923	29	32779											
CER1	9350	hgsc.bcm.edu	37	9	14720359	14720359	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	14720359	T	G	14720359	3	3	559	1	0	0	0	0	1	0	0	0	3267	1841	64	5	274	5	CER1	9	14720359	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10		14720359	126493072	30	32780											
FRMPD1	22844	hgsc.bcm.edu	37	9	37729831	37729831	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	37729831	A	T	37729831	3	4	559	1	0	0	0	0	1	0	0	0	6064	246	9	5	745	5	FRMPD1	9	37729831	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10	23009472	37729831	103483600	31	32781											
ROR2	4920	hgsc.bcm.edu	37	9	94493360	94493360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	94493360	G	A	94493360	3	1	559	1	0	0	0	0	1	0	0	0	13540	1203	42	2	1828	2	ROR2	9	94493360	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	56763529	94493360	46720071	32	32782											
INVS	27130	hgsc.bcm.edu	37	9	103054941	103054941	+	Missense_Mutation	SNP	G	G	A	rs76868679	bycluster;byfrequency;by1000genomes	TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	103054941	G	A	103054941	3	1	559	1	0	0	0	0	1	0	0	0	7794	1174	41	2	2452	2	INVS	9	103054941	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	8561581	103054941	38158490	33	32783											
IDI2	91734	hgsc.bcm.edu	37	10	1065491	1065491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	1065491	G	T	1065491	3	4	559	1	0	0	0	0	1	0	0	0	7507	1116	39	4	37	4	IDI2	10	1065491	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10		1065491	134469256	34	32784											
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89720744	89720744	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	89720744	G	T	89720744	4	4	559	1	0	0	0	0	0	1	0	0	12748	943	33	4	925	4	PTEN	10	89720744	Nonsense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	88655253	89720744	45814003	35	32785											
FBXO3	26273	hgsc.bcm.edu;ucsc.edu	37	11	33763575	33763575	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	33763575	T	A	33763575	3	1	559	1	0	0	0	0	1	0	0	0	5746	1551	54	5	124	5	FBXO3	11	33763575	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10		33763575	101242941	36	32786											
NR1H3	10062	hgsc.bcm.edu	37	11	47282968	47282968	+	Silent	SNP	C	C	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	47282968	C	A	47282968	2	1	559	1	0	0	0	0	0	0	0	1	10625	643	23	4		4	NR1H3	11	47282968	Silent	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	13519393	47282968	87723548	37	32787											
PIH1D2	120379	hgsc.bcm.edu;ucsc.edu	37	11	111941954	111941954	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	111941954	C	A	111941954	4	1	559	1	0	0	0	0	0	1	0	0	11914	922	32	4	662	4	PIH1D2	11	111941954	Nonsense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	64658986	111941954	23064562	38	32788											
NFRKB	4798	hgsc.bcm.edu;ucsc.edu	37	11	129739926	129739926	+	Silent	SNP	T	T	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	129739926	T	A	129739926	2	1	559	1	0	0	0	0	0	0	0	1	10391	1538	54	5		5	NFRKB	11	129739926	Silent	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	17797972	129739926	5266590	39	32789											
DDX47	51202	hgsc.bcm.edu	37	12	12974949	12974949	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	12974949	T	C	12974949	2	2	559	1	0	0	0	0	0	0	0	1	4367	1606	56	3		3	DDX47	12	12974949	Silent	SNP	T	TCGA-CZ-4858-01A-01D-1373-10		12974949	120876946	40	32790											
SLCO1B1	10599	hgsc.bcm.edu;ucsc.edu	37	12	21370118	21370118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	21370118	G	T	21370118	3	4	559	1	0	0	0	0	1	0	0	0	14736	1339	47	4	1605	4	SLCO1B1	12	21370118	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	8395169	21370118	112481777	41	32791											
ACVR1B	91	hgsc.bcm.edu;ucsc.edu	37	12	52369222	52369222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	52369222	G	A	52369222	3	1	559	1	0	0	0	0	1	0	0	0	221	1174	41	2	271	2	ACVR1B	12	52369222	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	30999104	52369222	81482673	42	32792											
PLEKHG7	440107	hgsc.bcm.edu	37	12	93135275	93135275	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	93135275	T	C	93135275	2	2	559	1	0	0	0	0	0	0	0	1	12082	1799	63	3		3	PLEKHG7	12	93135275	Silent	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	40766053	93135275	40716620	43	32793											
REC8	9985	hgsc.bcm.edu	37	14	24646359	24646359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	24646359	G	A	24646359	3	1	559	1	0	0	0	0	1	0	0	0	13212	1175	41	2	664	2	REC8	14	24646359	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10		24646359	82703181	44	32794											
DIO2	1734	hgsc.bcm.edu;ucsc.edu	37	14	80669159	80669162	+	Frame_Shift_Del	DEL	ATGC	ATGC	-	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	ATGC	ATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	-	80669162	ATGC	-	80669159	7	5	559	1	0	1	0	1	0	0	0	0	4527	101	4	0	130	0	DIO2	14	80669159	Frame_Shift_Del	DEL	ATGC	TCGA-CZ-4858-01A-01D-1373-10	56022800	80669159	26680381	45	32795											
CLDN9	9080	hgsc.bcm.edu	37	16	3063371	3063371	+	Missense_Mutation	SNP	C	C	T	rs144730563		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	3063371	C	T	3063371	3	4	559	1	0	0	0	0	1	0	0	0	3494	893	31	1	10	1	CLDN9	16	3063371	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10		3063371	87291382	46	32796											
PHKB	5257	hgsc.bcm.edu	37	16	47628114	47628114	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	47628114	A	T	47628114	3	4	559	1	0	0	0	0	1	0	0	0	11852	217	8	5	1298	5	PHKB	16	47628114	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10	44564743	47628114	42726639	47	32797											
TP53	7157	hgsc.bcm.edu	37	17	7578239	7578239	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	7578239	C	A	7578239	4	1	559	1	0	0	0	0	0	1	0	0	16393	864	30	4	684	4	TP53	17	7578239	Nonsense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10		7578239	73616971	48	32798											
DNAH9	1770	hgsc.bcm.edu;ucsc.edu	37	17	11725796	11725796	+	Silent	SNP	C	C	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	11725796	C	G	11725796	2	3	559	1	0	0	0	0	0	0	0	1	4610	842	30	4		4	DNAH9	17	11725796	Silent	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	4147557	11725796	69469414	49	32799											
ZNF624	57547	hgsc.bcm.edu;ucsc.edu	37	17	16525940	16525940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	16525940	A	C	16525940	3	2	559	1	0	0	0	0	1	0	0	0	18060	159	6	5	341	5	ZNF624	17	16525940	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10	4800144	16525940	64669270	50	32800											
TANC2	26115	hgsc.bcm.edu	37	17	61473212	61473212	+	Nonsense_Mutation	SNP	C	C	T	rs113065000	by1000genomes	TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	61473212	C	T	61473212	4	4	559	1	0	0	0	0	0	1	0	0	15557	595	21	2	3000	2	TANC2	17	61473212	Nonsense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	44947272	61473212	19721998	51	32801											
TNRC6C	57690	hgsc.bcm.edu	37	17	76047332	76047332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	76047332	C	T	76047332	3	4	559	1	0	0	0	0	1	0	0	0	16354	797	28	2	2191	2	TNRC6C	17	76047332	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	14574120	76047332	5147878	52	32802											
RANBP3	8498	hgsc.bcm.edu	37	19	5933477	5933477	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	5933477	A	T	5933477	3	4	559	1	0	0	0	0	1	0	0	0	13042	156	6	5	1331	5	RANBP3	19	5933477	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10		5933477	53195506	53	32803											
GPI	2821	hgsc.bcm.edu;ucsc.edu	37	19	34890920	34890920	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	34890920	G	A	34890920	2	1	559	1	0	0	0	0	0	0	0	1	6618	962	34	2		2	GPI	19	34890920	Silent	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	28957443	34890920	24238063	54	32804											
GSK3A	2931	hgsc.bcm.edu	37	19	42736734	42736734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	42736734	T	A	42736734	3	1	559	1	0	0	0	0	1	0	0	0	6830	1696	59	5	264	5	GSK3A	19	42736734	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	7845814	42736734	16392249	55	32805											
FUT1	2523	hgsc.bcm.edu	37	19	49253511	49253511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	49253511	G	A	49253511	3	1	559	1	0	0	0	0	1	0	0	0	6108	1087	38	1	73	1	FUT1	19	49253511	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	6516777	49253511	9875472	56	32806											
ZNF772	400720	hgsc.bcm.edu	37	19	57984667	57984667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	57984667	T	C	57984667	3	2	559	1	0	0	0	0	1	0	0	0	18157	1841	64	3	28	3	ZNF772	19	57984667	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10	8731156	57984667	1144316	57	32807											
PCNA	5111	hgsc.bcm.edu;ucsc.edu	37	20	5098199	5098199	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	5098199	C	G	5098199	3	3	559	1	0	0	0	0	1	0	0	0	11595	565	20	4	298	4	PCNA	20	5098199	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10		5098199	57927321	58	32808											
STAU1	6780	hgsc.bcm.edu;ucsc.edu	37	20	47739735	47739735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	47739735	G	A	47739735	3	1	559	1	0	0	0	0	1	0	0	0	15284	1116	39	1	901	1	STAU1	20	47739735	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	42641536	47739735	15285785	59	32809											
LSM14B	149986	hgsc.bcm.edu;ucsc.edu	37	20	60705681	60705681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	60705681	A	G	60705681	3	3	559	1	0	0	0	0	1	0	0	0	9062	304	11	3	791	3	LSM14B	20	60705681	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10	12965946	60705681	2319839	60	32810											
NRIP1	8204	hgsc.bcm.edu;ucsc.edu	37	21	16337701	16337701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	16337701	T	C	16337701	3	2	559	1	0	0	0	0	1	0	0	0	10659	1580	55	3	667	3	NRIP1	21	16337701	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01D-1373-10		16337701	31792194	61	32811											
SIK1	150094	hgsc.bcm.edu	37	21	44841005	44841005	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	T	44841005	G	T	44841005	2	4	559	1	0	0	0	0	0	0	0	1	14330	1074	38	4		4	SIK1	21	44841005	Silent	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	28503304	44841005	3288890	62	32812											
GNAZ	2781	hgsc.bcm.edu	37	22	23465575	23465575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	G	23465575	A	G	23465575	3	3	559	1	0	0	0	0	1	0	0	0	6521	275	10	3	1031	3	GNAZ	22	23465575	Missense_Mutation	SNP	A	TCGA-CZ-4858-01A-01D-1373-10		23465575	27838991	63	32813											
CELSR1	9620	hgsc.bcm.edu	37	22	46832125	46832125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	46832125	C	A	46832125	3	1	559	1	0	0	0	0	1	0	0	0	3223	884	31	4	4704	4	CELSR1	22	46832125	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10	23366550	46832125	4472441	64	32814											
PCYT1B	9468	hgsc.bcm.edu	37	X	24625963	24625963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	24625963	C	A	24625963	3	1	559	1	0	0	0	0	1	0	0	0	11618	913	32	4	937	4	PCYT1B	23	24625963	Missense_Mutation	SNP	C	TCGA-CZ-4858-01A-01D-1373-10		24625963	130644597	65	32815											
BTK	695	hgsc.bcm.edu	37	X	100611135	100611135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	A	100611135	G	A	100611135	3	1	559	1	0	0	0	0	1	0	0	0	1559	1348	47	2	528	2	BTK	23	100611135	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	75985172	100611135	54659425	66	32816											
SLC25A5	292	hgsc.bcm.edu	37	X	118605012	118605012	+	Missense_Mutation	SNP	G	G	C	rs80323990	byfrequency	TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	118605012	G	C	118605012	3	2	559	1	0	0	0	0	1	0	0	0	14525	1020	36	4	902	4	SLC25A5	23	118605012	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	17993877	118605012	36665548	67	32817											
FMR1	2332	hgsc.bcm.edu	37	X	147011504	147011504	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4858-01A-01D-1373-10	TCGA-CZ-4858-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	6eda7bd3-d11c-4d23-b0d2-2081d2dc1bdb	9d62378d-3768-46e3-a3c6-1edc22bba5e0	C	147011504	G	C	147011504	3	2	559	1	0	0	0	0	1	0	0	0	5967	1203	42	4	479	4	FMR1	23	147011504	Missense_Mutation	SNP	G	TCGA-CZ-4858-01A-01D-1373-10	28406492	147011504	8259056	68	32818											
VHL	7428	hgsc.bcm.edu	37	3	10183771	10183771	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4858-01A-01W-1369-10	TCGA-CZ-4858-11A-01W-1370-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	cde56908-be1f-41e6-a22d-77201c5e6148	0ae37c07-fa56-4fd7-9b40-63bfede5bbc8	G	10183771	T	G	10183771	3	3	560	1	0	0	0	0	1	0	0	0	17174	1664	58	5	242	5	VHL	3	10183771	Missense_Mutation	SNP	T	TCGA-CZ-4858-01A-01W-1369-10		10183771	187838659	1	32819											
CDKN2A	1029	hgsc.bcm.edu	37	9	21971163	21971164	+	In_Frame_Ins	INS	-	-	AGC	novel		TCGA-CZ-4858-01A-01W-1369-10	TCGA-CZ-4858-11A-01W-1370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	cde56908-be1f-41e6-a22d-77201c5e6148	0ae37c07-fa56-4fd7-9b40-63bfede5bbc8	AGC	21971164	-	AGC	21971163	7	5	560	1	0	1	1	0	0	0	0	0	3163	1174	41	0	283	0	CDKN2A	9	21971163	In_Frame_Ins	INS	-	TCGA-CZ-4858-01A-01W-1369-10		21971163	119242268	2	32820											
ZBTB48	3104	hgsc.bcm.edu;ucsc.edu	37	1	6647268	6647280	+	Frame_Shift_Del	DEL	TCCTCCTGCTCCC	TCCTCCTGCTCCC	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	TCCTCCTGCTCCC	TCCTCCTGCTCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	6647280	TCCTCCTGCTCCC	-	6647268	7	5	561	1	0	1	0	1	0	0	0	0	17561	1783	62	0	1159	0	ZBTB48	1	6647268	Frame_Shift_Del	DEL	TCCTCCTGCTCCC	TCGA-CZ-4859-01A-02D-1429-08		6647268	242603353	1	32821											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	16260312	16260312	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	16260312	A	C	16260312	3	2	561	1	0	0	0	0	1	0	0	0	15050	333	12	5	7619	5	SPEN	1	16260312	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	9613044	16260312	232990309	2	32822											
CYP4A11	1579	broad.mit.edu;hgsc.bcm.edu	37	1	47399695	47399695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	47399695	A	G	47399695	3	3	561	1	0	0	0	0	1	0	0	0	4185	304	11	3	430	3	CYP4A11	1	47399695	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	31139383	47399695	201850926	3	32823											
JAK1	3716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	65344794	65344794	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	65344794	A	T	65344794	4	4	561	1	0	0	0	0	0	1	0	0	7944	224	8	5	3309	5	JAK1	1	65344794	Nonsense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	17945099	65344794	183905827	4	32824											
ABCD3	5825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94943864	94943864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	94943864	G	A	94943864	3	1	561	1	0	0	0	0	1	0	0	0	62	1174	41	2	707	2	ABCD3	1	94943864	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	29599070	94943864	154306757	5	32825											
RPRD2	23248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	150444821	150444821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	150444821	A	G	150444821	3	3	561	1	0	0	0	0	1	0	0	0	13630	159	6	3	3439	3	RPRD2	1	150444821	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	55500957	150444821	98805800	6	32826											
KPRP	448834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152732829	152732829	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	152732829	C	A	152732829	4	1	561	1	0	0	0	0	0	1	0	0	8443	747	26	4	767	4	KPRP	1	152732829	Nonsense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	2288008	152732829	96517792	7	32827											
NUP210L	91181	hgsc.bcm.edu;ucsc.edu	37	1	154026805	154026807	+	In_Frame_Del	DEL	TAT	TAT	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	TAT	TAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	154026807	TAT	-	154026805	7	5	561	1	0	1	0	1	0	0	0	0	10768	1521	53	0	2348	0	NUP210L	1	154026805	In_Frame_Del	DEL	TAT	TCGA-CZ-4859-01A-02D-1429-08	1293976	154026805	95223816	8	32828											
CLK2	1196	broad.mit.edu;ucsc.edu	37	1	155238498	155238498	+	Splice_Site	DEL	C	-	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	155238498	-	-	155238498	8	5	561	1	0	1	0	1	0	0	1	0	3539	492	17	0	1051	0	CLK2	1	155238498	Splice_Site	DEL	C	TCGA-CZ-4859-01A-02D-1429-08	1211693	155238498	94012123	9	32829											
MYOC	4653	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	171605694	171605694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	171605694	G	A	171605694	3	1	561	1	0	0	0	0	1	0	0	0	10093	1116	39	1	632	1	MYOC	1	171605694	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	16367196	171605694	77644927	10	32830											
TARBP1	6894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	234536934	234536934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	234536934	C	T	234536934	3	4	561	1	0	0	0	0	1	0	0	0	15567	478	17	2	825	2	TARBP1	1	234536934	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	62931240	234536934	14713687	11	32831											
RBM34	23029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	235318310	235318311	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	235318311	TG	-	235318310	7	5	561	1	0	1	0	1	0	0	0	0	13144	1567	55	0	862	0	RBM34	1	235318310	Frame_Shift_Del	DEL	TG	TCGA-CZ-4859-01A-02D-1429-08	781376	235318310	13932311	12	32832											
APOB	338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	21225676	21225676	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	21225676	C	T	21225676	2	4	561	1	0	0	0	0	0	0	0	1	785	842	30	2		2	APOB	2	21225676	Silent	SNP	C	TCGA-CZ-4859-01A-02D-1429-08		21225676	221973697	13	32833											
IFT172	26160	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27704017	27704017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	27704017	G	T	27704017	3	4	561	1	0	0	0	0	1	0	0	0	7564	1368	48	4	4732	4	IFT172	2	27704017	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	6478341	27704017	215495356	14	32834											
SLC3A1	6519	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44507853	44507853	+	Splice_Site	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	44507853	A	G	44507853	5	3	561	1	0	0	0	0	0	0	1	0	14639	202	7	3	435	3	SLC3A1	2	44507853	Splice_Site	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	16803836	44507853	198691520	15	32835											
SLC4A5	57835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	74477471	74477471	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	74477471	T	A	74477471	3	1	561	1	0	0	0	0	1	0	0	0	14670	1594	55	5	1821	5	SLC4A5	2	74477471	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	29969618	74477471	168721902	16	32836											
INPP4A	3631	hgsc.bcm.edu;ucsc.edu	37	2	99156037	99156037	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	99156037	T	-	99156037	7	5	561	1	0	1	0	1	0	0	0	0	7759	1461	51	0	747	0	INPP4A	2	99156037	Frame_Shift_Del	DEL	T	TCGA-CZ-4859-01A-02D-1429-08	24678566	99156037	144043336	17	32837											
CYP27C1	339761	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	127961091	127961091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	127961091	G	C	127961091	3	2	561	1	0	0	0	0	1	0	0	0	4162	1116	39	4	1111	4	CYP27C1	2	127961091	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	28805054	127961091	115238282	18	32838											
LRP1B	53353	hgsc.bcm.edu;ucsc.edu	37	2	141812795	141812796	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	141812796	CC	-	141812795	7	5	561	1	0	1	0	1	0	0	0	0	8962	855	30	0	12685	0	LRP1B	2	141812795	Frame_Shift_Del	DEL	CC	TCGA-CZ-4859-01A-02D-1429-08	13851704	141812795	101386578	19	32839											
TTN	7273	broad.mit.edu	37	2	179434729	179434729	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	179434729	C	C	179434729	3	2	561	1	0	0	0	0	1	0	0	0	16747	246	9	5	31997	5	TTN	2	179434729	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	37621934	179434729	63764644	20	32840											
SCN5A	6331	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38647616	38647616	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	38647616	G	T	38647616	2	4	561	1	0	0	0	0	0	0	0	1	13935	932	33	4		4	SCN5A	3	38647616	Silent	SNP	G	TCGA-CZ-4859-01A-02D-1429-08		38647616	159374814	21	32841											
LIMD1	8994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	45637344	45637344	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	45637344	G	C	45637344	3	2	561	1	0	0	0	0	1	0	0	0	8805	1377	48	4	975	4	LIMD1	3	45637344	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	6989728	45637344	152385086	22	32842											
SPINK8	646424	broad.mit.edu	37	3	48362546	48362546	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	48362546	T	T	48362546	3	4	561	1	0	0	0	0	1	0	0	0	15077	1203	42	4	223	4	SPINK8	3	48362546	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	2725202	48362546	149659884	23	32843											
FAM116A	0	broad.mit.edu	37	3	57678668	57678668	+	Silent	SNP	G	A	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	57678668	A	A	57678668	2	1	561	1	0	0	0	0	0	0	0	1	5411	1190	42	2		2	FAM116A	3	57678668	Silent	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	9316122	57678668	140343762	24	32844											
WDR5B	54554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	122133533	122133533	+	Silent	SNP	A	A	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	122133533	A	T	122133533	2	4	561	1	0	0	0	0	0	0	0	1	17321	10	1	5		5	WDR5B	3	122133533	Silent	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	64454865	122133533	75888897	25	32845											
ZIC4	84107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	147114035	147114035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	147114035	A	G	147114035	3	3	561	1	0	0	0	0	1	0	0	0	17693	420	15	3	724	3	ZIC4	3	147114035	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	24980502	147114035	50908395	26	32846											
TNIK	23043	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	170945979	170945979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	170945979	G	A	170945979	3	1	561	1	0	0	0	0	1	0	0	0	16325	1203	42	2	4051	2	TNIK	3	170945979	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	23831944	170945979	27076451	27	32847											
DNAJB11	51726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186299285	186299285	+	Silent	SNP	C	C	T	rs138789127		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	186299285	C	T	186299285	2	4	561	1	0	0	0	0	0	0	0	1	4618	535	19	1		1	DNAJB11	3	186299285	Silent	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	15353306	186299285	11723145	28	32848											
AASDH	132949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	57215942	57215942	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	57215942	T	-	57215942	7	5	561	1	0	1	0	1	0	0	0	0	22	1725	60	0	1341	0	AASDH	4	57215942	Frame_Shift_Del	DEL	T	TCGA-CZ-4859-01A-02D-1429-08		57215942	133938334	29	32849											
TMPRSS11A	339967	broad.mit.edu;ucsc.edu	37	4	68780433	68780433	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	68780433	C	C	68780433	3	2	561	1	0	0	0	0	1	0	0	0	16251	1435	50	3	296	3	TMPRSS11A	4	68780433	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	11564491	68780433	122373843	30	32850											
FAT1	2195	broad.mit.edu;hgsc.bcm.edu	37	4	187535488	187535488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	187535488	G	A	187535488	3	1	561	1	0	0	0	0	1	0	0	0	5696	1294	45	2	4744	2	FAT1	4	187535488	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	118755055	187535488	3618788	31	32851											
WDR70	55100	broad.mit.edu;hgsc.bcm.edu	37	5	37379472	37379472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	37379472	G	A	37379472	3	1	561	1	0	0	0	0	1	0	0	0	17333	1348	47	2	5	2	WDR70	5	37379472	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08		37379472	143535788	32	32852											
PCDHGB7	56099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140798209	140798209	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	140798209	C	T	140798209	2	4	561	1	0	0	0	0	0	0	0	1	11575	845	30	2		2	PCDHGB7	5	140798209	Silent	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	103418737	140798209	40117051	33	32853											
PCDHGC5	56097	broad.mit.edu;ucsc.edu	37	5	140890569	140890569	+	Silent	SNP	C	T	T	rs143630962		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	140890569	T	T	140890569	2	4	561	1	0	0	0	0	0	0	0	1	11578	767	27	1		1	PCDHGC5	5	140890569	Silent	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	92360	140890569	40024691	34	32854											
G3BP1	10146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	151166245	151166245	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	151166245	C	T	151166245	2	4	561	1	0	0	0	0	0	0	0	1	6148	564	20	2		2	G3BP1	5	151166245	Silent	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	10275676	151166245	29749015	35	32855											
DOCK2	1794	broad.mit.edu	37	5	169494626	169494626	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	169494626	A	A	169494626	3	1	561	1	0	0	0	0	1	0	0	0	4689	1551	54	5	4758	5	DOCK2	5	169494626	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	18328381	169494626	11420634	36	32856											
B3GALT4	8705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33246066	33246066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	33246066	G	T	33246066	3	4	561	1	0	0	0	0	1	0	0	0	1249	991	35	4	872	4	B3GALT4	6	33246066	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08		33246066	137869001	37	32857											
PRIM2	5558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	57185282	57185282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	57185282	T	A	57185282	3	1	561	1	0	0	0	0	1	0	0	0	12501	1696	59	5	188	5	PRIM2	6	57185282	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	23939216	57185282	113929785	38	32858											
IMPG1	3617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	76715159	76715159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	76715159	G	A	76715159	3	1	561	1	0	0	0	0	1	0	0	0	7735	1174	41	2	1445	2	IMPG1	6	76715159	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	19529877	76715159	94399908	39	32859											
AIM1	202	broad.mit.edu;hgsc.bcm.edu	37	6	106987378	106987378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	106987378	A	G	106987378	3	3	561	1	0	0	0	0	1	0	0	0	430	217	8	3	3621	3	AIM1	6	106987378	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	30272219	106987378	64127689	40	32860											
TMEM195	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	15433778	15433778	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	15433778	T	C	15433778	2	2	561	1	0	0	0	0	0	0	0	1	16129	1722	60	3		3	TMEM195	7	15433778	Silent	SNP	T	TCGA-CZ-4859-01A-02D-1429-08		15433778	143704885	41	32861											
ABCB5	340273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	20739468	20739468	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	20739468	A	G	20739468	2	3	561	1	0	0	0	0	0	0	0	1	44	11	1	3		3	ABCB5	7	20739468	Silent	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	5305690	20739468	138399195	42	32862											
POLM	27434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	44113448	44113448	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	44113448	T	C	44113448	2	2	561	1	0	0	0	0	0	0	0	1	12213	1548	54	3		3	POLM	7	44113448	Silent	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	23373980	44113448	115025215	43	32863											
ABCA13	154664	broad.mit.edu;ucsc.edu	37	7	48682951	48682951	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	48682951	A	A	48682951	3	1	561	1	0	0	0	0	1	0	0	0	31	1290	45	2	14972	2	ABCA13	7	48682951	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	4569503	48682951	110455712	44	32864											
RUNDC3B	154661	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	87445570	87445570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	87445570	G	A	87445570	3	1	561	1	0	0	0	0	1	0	0	0	13758	1290	45	2	1311	2	RUNDC3B	7	87445570	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	38762619	87445570	71693093	45	32865											
MGAM	8972	hgsc.bcm.edu	37	7	141760115	141760115	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	141760115	G	-	141760115	7	5	561	1	0	1	0	1	0	0	0	0	9548	1357	47	0	4194	0	MGAM	7	141760115	Frame_Shift_Del	DEL	G	TCGA-CZ-4859-01A-02D-1429-08	54314545	141760115	17378548	46	32866											
IARS	3376	broad.mit.edu;ucsc.edu	37	9	95027315	95027315	+	Silent	SNP	G	A	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	95027315	A	A	95027315	2	1	561	1	0	0	0	0	0	0	0	1	7480	1310	46	2		2	IARS	9	95027315	Silent	SNP	G	TCGA-CZ-4859-01A-02D-1429-08		95027315	46186116	47	32867											
FAM120A	23196	broad.mit.edu	37	9	96320221	96320221	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	96320221	C	C	96320221	3	2	561	1	0	0	0	0	1	0	0	0	5419	391	14	5	2651	5	FAM120A	9	96320221	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	1292906	96320221	44893210	48	32868											
ANKRD30A	91074	broad.mit.edu	37	10	37478443	37478443	+	Missense_Mutation	SNP	A	G	G	rs71283286	alternate_allele	TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	37478443	G	G	37478443	3	3	561	1	0	0	0	0	1	0	0	0	658	391	14	3	2400	3	ANKRD30A	10	37478443	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08		37478443	98056304	49	32869											
NCOA4	8031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	51584968	51584968	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	51584968	A	C	51584968	3	2	561	1	0	0	0	0	1	0	0	0	10238	14	1	5	1145	5	NCOA4	10	51584968	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	14106525	51584968	83949779	50	32870											
PLCE1	51196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	95791726	95791726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	95791726	A	G	95791726	3	3	561	1	0	0	0	0	1	0	0	0	12041	333	12	3	925	3	PLCE1	10	95791726	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	44206758	95791726	39743021	51	32871											
SLC25A28	81894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	101373512	101373512	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	101373512	T	G	101373512	3	3	561	1	0	0	0	0	1	0	0	0	14504	1609	56	5	645	5	SLC25A28	10	101373512	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	5581786	101373512	34161235	52	32872											
C10orf79	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	105924006	105924007	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	105924007	-	A	105924006	7	5	561	1	0	1	1	0	0	0	0	0	1620	1406	49	0	1965	0	C10orf79	10	105924006	Frame_Shift_Ins	INS	-	TCGA-CZ-4859-01A-02D-1429-08	4550494	105924006	29610741	53	32873	420	2									
C10orf79	0	hgsc.bcm.edu	37	10	105924008	105924008	+	Silent	SNP	T	T	C	rs146641264	byfrequency	TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	105924008	T	C	105924008	2	2	561	1	0	0	0	0	0	0	0	1	1620	1451	51	3		3	C10orf79	10	105924008	Silent	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	2	105924008	29610739	54	32874	420	2									
HBG1	3047	hgsc.bcm.edu	37	11	5271024	5271024	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	5271024	A	-	5271024	7	5	561	1	0	1	0	1	0	0	0	0	6989	246	9	0	444	0	HBG1	11	5271024	Frame_Shift_Del	DEL	A	TCGA-CZ-4859-01A-02D-1429-08		5271024	129735492	55	32875											
HBG2	3048	hgsc.bcm.edu	37	11	5275948	5275948	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	5275948	A	-	5275948	7	5	561	1	0	1	0	1	0	0	0	0	6990	246	9	0	444	0	HBG2	11	5275948	Frame_Shift_Del	DEL	A	TCGA-CZ-4859-01A-02D-1429-08	4924	5275948	129730568	56	32876											
GAS2	2620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	22707336	22707336	+	Splice_Site	SNP	G	G	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	22707336	G	C	22707336	5	2	561	1	0	0	0	0	0	0	1	0	6252	1275	44	4	274	4	GAS2	11	22707336	Splice_Site	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	17431388	22707336	112299180	57	32877											
KIF18A	81930	broad.mit.edu;ucsc.edu	37	11	28045366	28045366	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	28045366	T	T	28045366	3	4	561	1	0	0	0	0	1	0	0	0	8287	536	19	1	168	1	KIF18A	11	28045366	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	5338030	28045366	106961150	58	32878											
TUT1	64852	broad.mit.edu;hgsc.bcm.edu	37	11	62348882	62348882	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	62348882	C	G	62348882	3	3	561	1	0	0	0	0	1	0	0	0	16792	864	30	4	2087	4	TUT1	11	62348882	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	34303516	62348882	72657634	59	32879											
NOX4	50507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	89223701	89223701	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	89223701	A	G	89223701	2	3	561	1	0	0	0	0	0	0	0	1	10565	214	8	3		3	NOX4	11	89223701	Silent	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	26874819	89223701	45782815	60	32880											
APLP2	334	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	129999984	129999984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	129999984	G	C	129999984	3	2	561	1	0	0	0	0	1	0	0	0	779	942	33	4	1549	4	APLP2	11	129999984	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	40776283	129999984	5006532	61	32881											
TPI1	7167	broad.mit.edu;hgsc.bcm.edu	37	12	6979622	6979622	+	RNA	SNP	C	C	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	6979622	C	T	6979622	1	4	561	0	1	0	0	0	0	0	0	0	16415	638	22	2		2	TPI1	12	6979622	RNA	SNP	C	TCGA-CZ-4859-01A-02D-1429-08		6979622	126872273	62	32882											
LRP1	4035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57590881	57590881	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	57590881	T	A	57590881	4	1	561	1	0	0	0	0	0	1	0	0	8958	1413	49	5	9231	5	LRP1	12	57590881	Nonsense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	50611259	57590881	76261014	63	32883											
APPL2	55198	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	105589090	105589090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	105589090	G	A	105589090	3	1	561	1	0	0	0	0	1	0	0	0	818	1319	46	2	836	2	APPL2	12	105589090	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	47998209	105589090	28262805	64	32884											
TRAFD1	10906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	112572550	112572550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	112572550	A	G	112572550	3	3	561	1	0	0	0	0	1	0	0	0	16459	246	9	3	62	3	TRAFD1	12	112572550	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	6983460	112572550	21279345	65	32885											
PAN3	255967	broad.mit.edu;hgsc.bcm.edu	37	13	28750663	28750663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	28750663	C	G	28750663	3	3	561	1	0	0	0	0	1	0	0	0	11422	912	32	4	596	4	PAN3	13	28750663	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08		28750663	86419215	66	32886											
DNAJC15	29103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	43652822	43652822	+	Silent	SNP	A	A	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	43652822	A	T	43652822	2	4	561	1	0	0	0	0	0	0	0	1	4636	349	13	5		5	DNAJC15	13	43652822	Silent	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	14902159	43652822	71517056	67	32887											
ITM2B	9445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	48830433	48830438	+	In_Frame_Del	DEL	GAAGAA	GAAGAA	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	GAAGAA	GAAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	48830438	GAAGAA	-	48830433	7	5	561	1	0	1	0	1	0	0	0	0	7920	1291	45	0	377	0	ITM2B	13	48830433	In_Frame_Del	DEL	GAAGAA	TCGA-CZ-4859-01A-02D-1429-08	5177611	48830433	66339445	68	32888											
FAM155A	728215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	108518168	108518168	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	108518168	G	T	108518168	2	4	561	1	0	0	0	0	0	0	0	1	5469	1335	47	4		4	FAM155A	13	108518168	Silent	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	59687735	108518168	6651710	69	32889											
TMCO3	55002	hgsc.bcm.edu;ucsc.edu	37	13	114156172	114156173	+	Frame_Shift_Ins	INS	-	-	CTTCAGGA	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	CTTCAGGA	114156173	-	CTTCAGGA	114156172	7	5	561	1	0	1	1	0	0	0	0	0	16009	507	18	0	936	0	TMCO3	13	114156172	Frame_Shift_Ins	INS	-	TCGA-CZ-4859-01A-02D-1429-08	5638004	114156172	1013706	70	32890											
SYNE2	23224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64532268	64532268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	64532268	C	T	64532268	3	4	561	1	0	0	0	0	1	0	0	0	15458	893	31	1	10529	1	SYNE2	14	64532268	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08		64532268	42817272	71	32891	421	2									
SYNE2	23224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64532269	64532269	+	Silent	SNP	G	G	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	64532269	G	C	64532269	2	2	561	1	0	0	0	0	0	0	0	1	15458	1103	39	4		4	SYNE2	14	64532269	Silent	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	1	64532269	42817271	72	32892	421	2									
PCNX	22990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	71444679	71444679	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	71444679	T	A	71444679	3	1	561	1	0	0	0	0	1	0	0	0	11598	1725	60	5	1647	5	PCNX	14	71444679	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	6912410	71444679	35904861	73	32893											
ALDH1A2	8854	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	58257978	58257978	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	58257978	T	A	58257978	3	1	561	1	0	0	0	0	1	0	0	0	491	1548	54	5	734	5	ALDH1A2	15	58257978	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08		58257978	44273414	74	32894											
PIAS1	8554	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	68457098	68457098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	68457098	A	G	68457098	3	3	561	1	0	0	0	0	1	0	0	0	11882	188	7	3	994	3	PIAS1	15	68457098	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	10199120	68457098	34074294	75	32895											
LMAN1L	79748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75108801	75108801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	75108801	G	A	75108801	3	1	561	1	0	0	0	0	1	0	0	0	8844	1000	35	2	374	2	LMAN1L	15	75108801	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	6651703	75108801	27422591	76	32896											
EME2	197342	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1825398	1825398	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	1825398	G	T	1825398	4	4	561	1	0	0	0	0	0	1	0	0	5091	1175	41	4	802	4	EME2	16	1825398	Nonsense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08		1825398	88529355	77	32897											
TSC2	7249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2134519	2134519	+	Silent	SNP	C	C	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	2134519	C	G	2134519	2	3	561	1	0	0	0	0	0	0	0	1	16618	668	24	4		4	TSC2	16	2134519	Silent	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	309121	2134519	88220234	78	32898											
KIAA0174	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71961673	71961673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	71961673	A	G	71961673	3	3	561	1	0	0	0	0	1	0	0	0	8165	333	12	3	1088	3	KIAA0174	16	71961673	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	69827154	71961673	18393080	79	32899											
ZZEF1	23140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3945851	3945851	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	-	3945851	A	-	3945851	7	5	561	1	0	1	0	1	0	0	0	0	18267	246	9	0	2775	0	ZZEF1	17	3945851	Frame_Shift_Del	DEL	A	TCGA-CZ-4859-01A-02D-1429-08		3945851	77249359	80	32900											
VTN	7448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26696549	26696549	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	26696549	C	G	26696549	3	3	561	1	0	0	0	0	1	0	0	0	17249	652	23	4	952	4	VTN	17	26696549	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	22750698	26696549	54498661	81	32901											
SEZ6	124925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27287870	27287870	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	27287870	C	T	27287870	2	4	561	1	0	0	0	0	0	0	0	1	14155	726	26	2		2	SEZ6	17	27287870	Silent	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	591321	27287870	53907340	82	32902											
SUZ12	23512	broad.mit.edu;hgsc.bcm.edu	37	17	30310113	30310113	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	30310113	T	A	30310113	3	1	561	1	0	0	0	0	1	0	0	0	15428	1609	56	5	1047	5	SUZ12	17	30310113	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	3022243	30310113	50885097	83	32903											
C17orf75	64149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	30660470	30660470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	30660470	A	G	30660470	3	3	561	1	0	0	0	0	1	0	0	0	1882	72	3	3	257	3	C17orf75	17	30660470	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	350357	30660470	50534740	84	32904											
ERBB2	2064	hgsc.bcm.edu;ucsc.edu	37	17	37871549	37871550	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	37871550	-	C	37871549	7	5	561	1	0	1	1	0	0	0	0	0	5208	1551	54	0	1197	0	ERBB2	17	37871549	Frame_Shift_Ins	INS	-	TCGA-CZ-4859-01A-02D-1429-08	7211079	37871549	43323661	85	32905											
ORMDL3	94103	broad.mit.edu;ucsc.edu	37	17	38079479	38079479	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	38079479	T	T	38079479	3	4	561	1	0	0	0	0	1	0	0	0	11278	1232	43	4	257	4	ORMDL3	17	38079479	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	207930	38079479	43115731	86	32906											
NBR1	4077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41341626	41341626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	41341626	G	A	41341626	3	1	561	1	0	0	0	0	1	0	0	0	10207	1059	37	1	528	1	NBR1	17	41341626	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	3262147	41341626	39853584	87	32907											
MAPT	4137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	44061288	44061288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	44061288	A	G	44061288	3	3	561	1	0	0	0	0	1	0	0	0	9304	130	5	3	1136	3	MAPT	17	44061288	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	2719662	44061288	37133922	88	32908											
MED13	9969	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	60129921	60129921	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	60129921	T	C	60129921	2	2	561	1	0	0	0	0	0	0	0	1	9437	1606	56	3		3	MED13	17	60129921	Silent	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	16068633	60129921	21065289	89	32909											
ENPP7	339221	broad.mit.edu	37	17	77707422	77707422	+	Missense_Mutation	SNP	G	A	A	rs145931726		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	77707422	A	A	77707422	3	1	561	1	0	0	0	0	1	0	0	0	5137	1145	40	1	376	1	ENPP7	17	77707422	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	17577501	77707422	3487788	90	32910											
ATP9B	374868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	76870367	76870367	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	76870367	G	A	76870367	4	1	561	1	0	0	0	0	0	1	0	0	1199	1212	42	2	316	2	ATP9B	18	76870367	Nonsense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08		76870367	1206881	91	32911											
ZNF556	80032	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2877284	2877284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	2877284	G	A	2877284	3	1	561	1	0	0	0	0	1	0	0	0	17999	1261	44	2	342	2	ZNF556	19	2877284	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08		2877284	56251699	92	32912											
RFX1	5989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14083791	14083791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	14083791	C	G	14083791	3	3	561	1	0	0	0	0	1	0	0	0	13275	536	19	4	1913	4	RFX1	19	14083791	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	11206507	14083791	45045192	93	32913											
PRODH2	58510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36303397	36303397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	36303397	G	T	36303397	3	4	561	1	0	0	0	0	1	0	0	0	12559	1174	41	4	1182	4	PRODH2	19	36303397	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	22219606	36303397	22825586	94	32914											
ZNF606	80095	broad.mit.edu;hgsc.bcm.edu	37	19	58512737	58512737	+	Splice_Site	SNP	A	A	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	58512737	A	C	58512737	5	2	561	1	0	0	0	0	0	0	1	0	18044	57	2	5		5	ZNF606	19	58512737	Splice_Site	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	22209340	58512737	616246	95	32915											
SIGLEC1	6614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3673709	3673709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	3673709	C	T	3673709	3	4	561	1	0	0	0	0	1	0	0	0	14318	710	25	2	1583	2	SIGLEC1	20	3673709	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08		3673709	59351811	96	32916											
MKKS	8195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	10393730	10393730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	10393730	T	C	10393730	3	2	561	1	0	0	0	0	1	0	0	0	9607	1522	53	3	1295	3	MKKS	20	10393730	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	6720021	10393730	52631790	97	32917											
SEL1L2	80343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	13830874	13830874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	13830874	T	A	13830874	3	1	561	1	0	0	0	0	1	0	0	0	14024	1783	62	5	164	5	SEL1L2	20	13830874	Missense_Mutation	SNP	T	TCGA-CZ-4859-01A-02D-1429-08	3437144	13830874	49194646	98	32918											
RALY	22913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	32663747	32663747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	32663747	C	G	32663747	3	3	561	1	0	0	0	0	1	0	0	0	13032	643	23	4	459	4	RALY	20	32663747	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	18832873	32663747	30361773	99	32919											
NCOA6	23054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33329729	33329729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	33329729	A	G	33329729	3	3	561	1	0	0	0	0	1	0	0	0	10240	275	10	3	1880	3	NCOA6	20	33329729	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	665982	33329729	29695791	100	32920											
CABLES2	81928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	60971621	60971621	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	60971621	G	A	60971621	2	1	561	1	0	0	0	0	0	0	0	1	2532	1219	43	2		2	CABLES2	20	60971621	Silent	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	27641892	60971621	2053899	101	32921											
CHAF1B	8208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37785583	37785583	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	37785583	C	G	37785583	3	3	561	1	0	0	0	0	1	0	0	0	3314	478	17	4	1505	4	CHAF1B	21	37785583	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08		37785583	10344312	102	32922											
AIFM3	150209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21331018	21331018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	21331018	G	T	21331018	3	4	561	1	0	0	0	0	1	0	0	0	428	1000	35	4	1169	4	AIFM3	22	21331018	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08		21331018	29973548	103	32923											
RAB36	9609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	23501360	23501360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	G	23501360	C	G	23501360	3	3	561	1	0	0	0	0	1	0	0	0	12939	710	25	4	771	4	RAB36	22	23501360	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	2170342	23501360	27803206	104	32924											
EP300	2033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	41574358	41574358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	41574358	C	A	41574358	3	1	561	1	0	0	0	0	1	0	0	0	5150	595	21	4	6765	4	EP300	22	41574358	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	18072998	41574358	9730208	105	32925											
HEPH	9843	broad.mit.edu	37	X	65474914	65474914	+	Missense_Mutation	SNP	G	T	T	rs146719428		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454	.	.	Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	65474914	T	T	65474914	3	4	561	1	0	0	0	0	1	0	0	0	7061	1252	44	4	2825	4	HEPH	23	65474914	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08		65474914	89795646	106	32926											
BRWD3	254065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	79948521	79948521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	79948521	C	T	79948521	3	4	561	1	0	0	0	0	1	0	0	0	1528	768	27	1	2283	1	BRWD3	23	79948521	Missense_Mutation	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	14473607	79948521	75322039	107	32927											
TEX13A	56157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	104464107	104464107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	104464107	A	C	104464107	3	2	561	1	0	0	0	0	1	0	0	0	15788	388	14	5	464	5	TEX13A	23	104464107	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	24515586	104464107	50806453	108	32928											
ANKRD58	0	broad.mit.edu	37	X	118893385	118893385	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	T	118893385	T	T	118893385	3	4	561	1	0	0	0	0	1	0	0	0	684	1232	43	4	757	4	ANKRD58	23	118893385	Missense_Mutation	SNP	G	TCGA-CZ-4859-01A-02D-1429-08	14429278	118893385	36377175	109	32929											
STAG2	10735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	123184076	123184076	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	C	123184076	A	C	123184076	3	2	561	1	0	0	0	0	1	0	0	0	15255	333	12	5	968	5	STAG2	23	123184076	Missense_Mutation	SNP	A	TCGA-CZ-4859-01A-02D-1429-08	4290691	123184076	32086484	110	32930											
CSAG1	158511	broad.mit.edu;hgsc.bcm.edu	37	X	151909172	151909172	+	Silent	SNP	C	C	A	novel		TCGA-CZ-4859-01A-02D-1429-08	TCGA-CZ-4859-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	82c0b6e4-cb0f-4870-81c9-b45a93d6f5d3	3257f80f-9009-4ab9-a9b8-b93ad97bc18e	A	151909172	C	A	151909172	2	1	561	1	0	0	0	0	0	0	0	1	3928	639	23	4		4	CSAG1	23	151909172	Silent	SNP	C	TCGA-CZ-4859-01A-02D-1429-08	28725096	151909172	3361388	111	32931											
PLCH2	9651	hgsc.bcm.edu	37	1	2431088	2431088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	2431088	C	A	2431088	3	1	562	1	0	0	0	0	1	0	0	0	12045	478	17	4	2668	4	PLCH2	1	2431088	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10		2431088	246819533	1	32932											
PRDM2	7799	hgsc.bcm.edu;ucsc.edu	37	1	14106783	14106783	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	14106783	A	G	14106783	2	3	562	1	0	0	0	0	0	0	0	1	12468	40	2	3		3	PRDM2	1	14106783	Silent	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	11675695	14106783	235143838	2	32933											
ARID1A	8289	hgsc.bcm.edu;ucsc.edu	37	1	27099430	27099430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	27099430	C	T	27099430	3	4	562	1	0	0	0	0	1	0	0	0	913	768	27	1	3721	1	ARID1A	1	27099430	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	12992647	27099430	222151191	3	32934											
RNF19B	127544	hgsc.bcm.edu;ucsc.edu	37	1	33413940	33413940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	33413940	C	T	33413940	3	4	562	1	0	0	0	0	1	0	0	0	13484	710	25	2	1383	2	RNF19B	1	33413940	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	6314510	33413940	215836681	4	32935											
SNIP1	79753	hgsc.bcm.edu;ucsc.edu	37	1	38006224	38006225	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	38006225	-	A	38006224	7	5	562	1	0	1	1	0	0	0	0	0	14861	1754	61	0	738	0	SNIP1	1	38006224	Frame_Shift_Ins	INS	-	TCGA-CZ-4861-01A-01D-1373-10	4592284	38006224	211244397	5	32936											
PDE4DIP	9659	hgsc.bcm.edu	37	1	144856852	144856852	+	Silent	SNP	C	C	T	rs150847495	byfrequency	TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	144856852	C	T	144856852	2	4	562	1	0	0	0	0	0	0	0	1	11650	523	19	1		1	PDE4DIP	1	144856852	Silent	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	106850628	144856852	104393769	6	32937											
POGK	57645	hgsc.bcm.edu	37	1	166818327	166818327	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	166818327	T	A	166818327	3	1	562	1	0	0	0	0	1	0	0	0	12192	1522	53	5	525	5	POGK	1	166818327	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	21961475	166818327	82432294	7	32938											
CHIT1	1118	hgsc.bcm.edu	37	1	203186979	203186979	+	Missense_Mutation	SNP	C	C	G	rs140228721	alternate_allele	TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	203186979	C	G	203186979	3	3	562	1	0	0	0	0	1	0	0	0	3348	796	28	4	364	4	CHIT1	1	203186979	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	36368652	203186979	46063642	8	32939											
PIK3C2B	5287	hgsc.bcm.edu	37	1	204419062	204419062	+	Missense_Mutation	SNP	G	G	T	rs142362916	byfrequency;alternate_allele	TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	204419062	G	T	204419062	3	4	562	1	0	0	0	0	1	0	0	0	11917	1116	39	4	2838	4	PIK3C2B	1	204419062	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	1232083	204419062	44831559	9	32940											
USH2A	7399	hgsc.bcm.edu;ucsc.edu	37	1	216465660	216465660	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	216465660	T	G	216465660	3	3	562	1	0	0	0	0	1	0	0	0	17048	1812	63	5	14177	5	USH2A	1	216465660	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	12046598	216465660	32784961	10	32941											
RYR2	6262	hgsc.bcm.edu;ucsc.edu	37	1	237664037	237664037	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	237664037	C	G	237664037	3	3	562	1	0	0	0	0	1	0	0	0	13782	507	18	4	2312	4	RYR2	1	237664037	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	21198377	237664037	11586584	11	32942											
CNGA3	1261	hgsc.bcm.edu	37	2	98994250	98994250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	98994250	C	A	98994250	3	1	562	1	0	0	0	0	1	0	0	0	3600	595	21	4	208	4	CNGA3	2	98994250	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10		98994250	144205123	12	32943											
EPC2	26122	hgsc.bcm.edu;ucsc.edu	37	2	149528431	149528431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	149528431	G	T	149528431	3	4	562	1	0	0	0	0	1	0	0	0	5163	1000	35	4	1335	4	EPC2	2	149528431	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	50534181	149528431	93670942	13	32944											
GALNT5	11227	hgsc.bcm.edu;ucsc.edu	37	2	158114714	158114714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	158114714	C	G	158114714	3	3	562	1	0	0	0	0	1	0	0	0	6223	816	29	4	122	4	GALNT5	2	158114714	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	8586283	158114714	85084659	14	32945											
ADAM23	8745	hgsc.bcm.edu;ucsc.edu	37	2	207457434	207457434	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	207457434	C	T	207457434	2	4	562	1	0	0	0	0	0	0	0	1	245	518	18	2		2	ADAM23	2	207457434	Silent	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	49342720	207457434	35741939	15	32946											
CRELD1	78987	hgsc.bcm.edu	37	3	9984520	9984520	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	9984520	G	T	9984520	4	4	562	1	0	0	0	0	0	1	0	0	3868	1233	43	4	783	4	CRELD1	3	9984520	Nonsense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10		9984520	188037910	16	32947											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10191479	10191479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	10191479	C	G	10191479	3	3	562	1	0	0	0	0	1	0	0	0	17174	912	32	4	482	4	VHL	3	10191479	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	206959	10191479	187830951	17	32948											
XPC	7508	hgsc.bcm.edu;ucsc.edu	37	3	14188813	14188813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	14188813	G	T	14188813	3	4	562	1	0	0	0	0	1	0	0	0	17453	962	34	4	249	4	XPC	3	14188813	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	3997334	14188813	183833617	18	32949											
SLC4A7	9497	hgsc.bcm.edu	37	3	27463253	27463253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	27463253	C	A	27463253	3	1	562	1	0	0	0	0	1	0	0	0	14671	826	29	4	2455	4	SLC4A7	3	27463253	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	13274440	27463253	170559177	19	32950											
SETD2	29072	hgsc.bcm.edu	37	3	47098445	47098445	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	47098445	G	A	47098445	4	1	562	1	0	0	0	0	0	1	0	0	14144	1357	47	2	893	2	SETD2	3	47098445	Nonsense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	19635192	47098445	150923985	20	32951											
SETD2	29072	ucsc.edu	37	3	47163824	47163824	+	Missense_Mutation	SNP	C	C	G	rs9311404	bycluster;byfrequency;by1000genomes	TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	C	G	C	C	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	47163824	C	G	47163824	3	3	562	1	0	0	0	0	1	0	0	0	14144	478	17	4	5468	4	SETD2	3	47163824	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	65379	47163824	150858606	21	32952											
DOCK3	1795	hgsc.bcm.edu;ucsc.edu	37	3	51376390	51376390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	51376390	A	G	51376390	3	3	562	1	0	0	0	0	1	0	0	0	4690	131	5	3	3843	3	DOCK3	3	51376390	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	4212566	51376390	146646040	22	32953											
APPL1	26060	hgsc.bcm.edu	37	3	57280129	57280129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	57280129	T	G	57280129	3	3	562	1	0	0	0	0	1	0	0	0	817	1696	59	5	530	5	APPL1	3	57280129	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	5903739	57280129	140742301	23	32954											
CADM2	253559	hgsc.bcm.edu	37	3	85851255	85851255	+	Silent	SNP	A	A	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	85851255	A	C	85851255	2	2	562	1	0	0	0	0	0	0	0	1	2569	117	5	5		5	CADM2	3	85851255	Silent	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	28571126	85851255	112171175	24	32955											
CRYBG3	131544	hgsc.bcm.edu;ucsc.edu	37	3	97617751	97617751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	97617751	C	A	97617751	3	1	562	1	0	0	0	0	1	0	0	0	3915	564	20	4	1920	4	CRYBG3	3	97617751	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	11766496	97617751	100404679	25	32956											
SI	6476	hgsc.bcm.edu	37	3	164732948	164732948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	164732948	A	G	164732948	3	3	562	1	0	0	0	0	1	0	0	0	14310	275	10	3	1585	3	SI	3	164732948	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	67115197	164732948	33289482	26	32957											
GPR160	26996	hgsc.bcm.edu;ucsc.edu	37	3	169802564	169802564	+	Silent	SNP	G	G	A	rs148749842	alternate_allele	TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	169802564	G	A	169802564	2	1	562	1	0	0	0	0	0	0	0	1	6671	933	33	2		2	GPR160	3	169802564	Silent	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	5069616	169802564	28219866	27	32958											
ABCC5	10057	hgsc.bcm.edu;ucsc.edu	37	3	183706414	183706414	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	183706414	A	C	183706414	3	2	562	1	0	0	0	0	1	0	0	0	56	217	8	5	4072	5	ABCC5	3	183706414	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	13903850	183706414	14316016	28	32959											
OSTalpha	0	hgsc.bcm.edu;ucsc.edu	37	3	195955792	195955792	+	Splice_Site	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	195955792	G	A	195955792	5	1	562	1	0	0	0	0	0	0	1	0	11307	1159	40	1	656	1	OSTalpha	3	195955792	Splice_Site	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	12249378	195955792	2066638	29	32960											
SCARB2	950	hgsc.bcm.edu;ucsc.edu	37	4	77095296	77095296	+	Splice_Site	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	77095296	C	T	77095296	5	4	562	1	0	0	0	0	0	0	1	0	13895	521	18	2	465	2	SCARB2	4	77095296	Splice_Site	SNP	C	TCGA-CZ-4861-01A-01D-1373-10		77095296	114058980	30	32961											
TET2	54790	hgsc.bcm.edu;ucsc.edu	37	4	106193890	106193890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	106193890	G	A	106193890	3	1	562	1	0	0	0	0	1	0	0	0	15782	1116	39	1	4471	1	TET2	4	106193890	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	29098594	106193890	84960386	31	32962											
NNT	23530	hgsc.bcm.edu	37	5	43675692	43675692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	43675692	T	A	43675692	3	1	562	1	0	0	0	0	1	0	0	0	10517	1493	52	5	2780	5	NNT	5	43675692	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10		43675692	137239568	32	32963											
SLC34A1	6569	hgsc.bcm.edu	37	5	176824836	176824836	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	176824836	C	G	176824836	3	3	562	1	0	0	0	0	1	0	0	0	14580	652	23	4	1606	4	SLC34A1	5	176824836	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	133149144	176824836	4090424	33	32964											
F12	2161	hgsc.bcm.edu	37	5	176832389	176832389	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	176832389	A	C	176832389	3	2	562	1	0	0	0	0	1	0	0	0	5341	159	6	5	1555	5	F12	5	176832389	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	7553	176832389	4082871	34	32965											
PGBD1	84547	hgsc.bcm.edu;ucsc.edu	37	6	28269595	28269595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	28269595	C	T	28269595	3	4	562	1	0	0	0	0	1	0	0	0	11787	507	18	2	1986	2	PGBD1	6	28269595	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10		28269595	142845472	35	32966											
CNR1	1268	hgsc.bcm.edu;ucsc.edu	37	6	88853921	88853921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	88853921	G	T	88853921	3	4	562	1	0	0	0	0	1	0	0	0	3633	1000	35	4	349	4	CNR1	6	88853921	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	60584326	88853921	82261146	36	32967											
SMPD2	6610	hgsc.bcm.edu;ucsc.edu	37	6	109763200	109763200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	109763200	G	A	109763200	3	1	562	1	0	0	0	0	1	0	0	0	14818	1377	48	2	262	2	SMPD2	6	109763200	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	20909279	109763200	61351867	37	32968											
MTHFD1L	25902	hgsc.bcm.edu;ucsc.edu	37	6	151336687	151336687	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	151336687	A	T	151336687	3	4	562	1	0	0	0	0	1	0	0	0	9935	304	11	5	2538	5	MTHFD1L	6	151336687	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	41573487	151336687	19778380	38	32969											
SYNE1	23345	hgsc.bcm.edu;ucsc.edu	37	6	152776696	152776696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	152776696	C	A	152776696	3	1	562	1	0	0	0	0	1	0	0	0	15457	912	32	4	24201	4	SYNE1	6	152776696	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	1440009	152776696	18338371	39	32970											
TWISTNB	221830	hgsc.bcm.edu;ucsc.edu	37	7	19738224	19738224	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	19738224	G	A	19738224	2	1	562	1	0	0	0	0	0	0	0	1	16796	1335	47	2		2	TWISTNB	7	19738224	Silent	SNP	G	TCGA-CZ-4861-01A-01D-1373-10		19738224	139400439	40	32971											
PKD1L1	168507	hgsc.bcm.edu;ucsc.edu	37	7	47925313	47925313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	47925313	G	A	47925313	3	1	562	1	0	0	0	0	1	0	0	0	11971	1232	43	2	5533	2	PKD1L1	7	47925313	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	28187089	47925313	111213350	41	32972											
ZKSCAN1	7586	hgsc.bcm.edu;ucsc.edu	37	7	99631799	99631799	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	99631799	G	A	99631799	2	1	562	1	0	0	0	0	0	0	0	1	17698	1132	40	1		1	ZKSCAN1	7	99631799	Silent	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	51706486	99631799	59506864	42	32973											
MKLN1	4289	hgsc.bcm.edu;ucsc.edu	37	7	131147981	131147982	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	-	131147982	AT	-	131147981	7	5	562	1	0	1	0	1	0	0	0	0	9610	101	4	0	1614	0	MKLN1	7	131147981	Frame_Shift_Del	DEL	AT	TCGA-CZ-4861-01A-01D-1373-10	31516182	131147981	27990682	43	32974											
RUNX1T1	862	hgsc.bcm.edu	37	8	93004069	93004069	+	Silent	SNP	T	T	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	93004069	T	G	93004069	2	3	562	1	0	0	0	0	0	0	0	1	13760	1799	63	5		5	RUNX1T1	8	93004069	Silent	SNP	T	TCGA-CZ-4861-01A-01D-1373-10		93004069	53359953	44	32975											
NUDCD1	84955	hgsc.bcm.edu	37	8	110255494	110255494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	110255494	A	G	110255494	3	3	562	1	0	0	0	0	1	0	0	0	10729	14	1	3	259	3	NUDCD1	8	110255494	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	17251425	110255494	36108528	45	32976											
SYBU	55638	hgsc.bcm.edu;ucsc.edu	37	8	110588188	110588188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	110588188	C	A	110588188	3	1	562	1	0	0	0	0	1	0	0	0	15439	856	30	4	1056	4	SYBU	8	110588188	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	332694	110588188	35775834	46	32977											
PTPRD	5789	hgsc.bcm.edu;ucsc.edu	37	9	8507401	8507401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	8507401	G	A	8507401	3	1	562	1	0	0	0	0	1	0	0	0	12812	1000	35	2	4329	2	PTPRD	9	8507401	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10		8507401	132706030	47	32978											
INVS	27130	hgsc.bcm.edu;ucsc.edu	37	9	103060232	103060232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	103060232	G	T	103060232	3	4	562	1	0	0	0	0	1	0	0	0	7794	1000	35	4	3089	4	INVS	9	103060232	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	94552831	103060232	38153199	48	32979											
ARPC5L	81873	hgsc.bcm.edu;ucsc.edu	37	9	127637307	127637307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	127637307	G	T	127637307	3	4	562	1	0	0	0	0	1	0	0	0	975	933	33	4	286	4	ARPC5L	9	127637307	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	24577075	127637307	13576124	49	32980											
GAD2	2572	hgsc.bcm.edu;ucsc.edu	37	10	26534856	26534856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	26534856	T	C	26534856	3	2	562	1	0	0	0	0	1	0	0	0	6187	1841	64	3	877	3	GAD2	10	26534856	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10		26534856	108999891	50	32981											
C10orf35	219738	hgsc.bcm.edu;ucsc.edu	37	10	71391583	71391583	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	71391583	C	G	71391583	3	3	562	1	0	0	0	0	1	0	0	0	1605	709	25	4	86	4	C10orf35	10	71391583	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	44856727	71391583	64143164	51	32982											
CC2D2B	387707	hgsc.bcm.edu;ucsc.edu	37	10	97791691	97791691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	97791691	G	T	97791691	3	4	562	1	0	0	0	0	1	0	0	0	2731	1377	48	4	1170	4	CC2D2B	10	97791691	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	26400108	97791691	37743056	52	32983											
DNHD1	144132	hgsc.bcm.edu	37	11	6567885	6567885	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	6567885	A	C	6567885	3	2	562	1	0	0	0	0	1	0	0	0	4670	217	8	5	5799	5	DNHD1	11	6567885	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10		6567885	128438631	53	32984	422	2									
DNHD1	144132	hgsc.bcm.edu	37	11	6567893	6567895	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	-	6567895	GGC	-	6567893	7	5	562	1	0	1	0	1	0	0	0	0	4670	991	35	0	5807	0	DNHD1	11	6567893	In_Frame_Del	DEL	GGC	TCGA-CZ-4861-01A-01D-1373-10	8	6567893	128438623	54	32985	422	2									
OR5P2	120065	hgsc.bcm.edu	37	11	7818386	7818387	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	7818387	-	T	7818386	7	5	562	1	0	1	1	0	0	0	0	0	11185	420	15	0	868	0	OR5P2	11	7818386	Frame_Shift_Ins	INS	-	TCGA-CZ-4861-01A-01D-1373-10	1250493	7818386	127188130	55	32986											
TMX2	51075	hgsc.bcm.edu;ucsc.edu	37	11	57480238	57480238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	57480238	C	T	57480238	3	4	562	1	0	0	0	0	1	0	0	0	16279	739	26	2	150	2	TMX2	11	57480238	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	49661852	57480238	77526278	56	32987											
ME3	10873	hgsc.bcm.edu;ucsc.edu	37	11	86198484	86198484	+	Splice_Site	SNP	T	T	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	86198484	T	G	86198484	5	3	562	1	0	0	0	0	0	0	1	0	9426	1594	55	5	1146	5	ME3	11	86198484	Splice_Site	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	28718246	86198484	48808032	57	32988											
CNTN5	53942	hgsc.bcm.edu;ucsc.edu	37	11	100211348	100211348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	100211348	A	G	100211348	3	3	562	1	0	0	0	0	1	0	0	0	3646	420	15	3	2962	3	CNTN5	11	100211348	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	14012864	100211348	34795168	58	32989											
ATM	472	hgsc.bcm.edu;ucsc.edu	37	11	108206594	108206594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	108206594	A	G	108206594	3	3	562	1	0	0	0	0	1	0	0	0	1109	333	12	3	8392	3	ATM	11	108206594	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	7995246	108206594	26799922	59	32990											
ABCG4	64137	hgsc.bcm.edu;ucsc.edu	37	11	119031336	119031336	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	119031336	T	A	119031336	3	1	562	1	0	0	0	0	1	0	0	0	70	1580	55	5	1735	5	ABCG4	11	119031336	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	10824742	119031336	15975180	60	32991											
TECTA	7007	hgsc.bcm.edu;ucsc.edu	37	11	121000530	121000530	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	121000530	T	A	121000530	3	1	562	1	0	0	0	0	1	0	0	0	15759	1609	56	5	2585	5	TECTA	11	121000530	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	1969194	121000530	14005986	61	32992											
WNK1	65125	hgsc.bcm.edu;ucsc.edu	37	12	1005370	1005370	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	1005370	A	T	1005370	3	4	562	1	0	0	0	0	1	0	0	0	17389	14	1	5	7313	5	WNK1	12	1005370	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10		1005370	132846525	62	32993											
C12orf41	0	hgsc.bcm.edu;ucsc.edu	37	12	49063049	49063049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	49063049	C	T	49063049	3	4	562	1	0	0	0	0	1	0	0	0	1689	565	20	2	782	2	C12orf41	12	49063049	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	48057679	49063049	84788846	63	32994											
SART3	9733	hgsc.bcm.edu;ucsc.edu	37	12	108931344	108931344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	108931344	C	T	108931344	3	4	562	1	0	0	0	0	1	0	0	0	13860	739	26	2	1706	2	SART3	12	108931344	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	59868295	108931344	24920551	64	32995											
SELPLG	6404	hgsc.bcm.edu;ucsc.edu	37	12	109017991	109017991	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	109017991	G	A	109017991	2	1	562	1	0	0	0	0	0	0	0	1	14033	987	35	2		2	SELPLG	12	109017991	Silent	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	86647	109017991	24833904	65	32996											
RNF219	79596	hgsc.bcm.edu;ucsc.edu	37	13	79190197	79190197	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	79190197	A	G	79190197	2	3	562	1	0	0	0	0	0	0	0	1	13495	40	2	3		3	RNF219	13	79190197	Silent	SNP	A	TCGA-CZ-4861-01A-01D-1373-10		79190197	35979681	66	32997											
SLITRK1	114798	hgsc.bcm.edu	37	13	84454708	84454708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	84454708	G	A	84454708	3	1	562	1	0	0	0	0	1	0	0	0	14755	1348	47	2	1159	2	SLITRK1	13	84454708	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	5264511	84454708	30715170	67	32998											
ARID4A	5926	hgsc.bcm.edu;ucsc.edu	37	14	58831047	58831047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	58831047	A	G	58831047	3	3	562	1	0	0	0	0	1	0	0	0	919	101	4	3	2314	3	ARID4A	14	58831047	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10		58831047	48518493	68	32999											
SIPA1L1	26037	hgsc.bcm.edu;ucsc.edu	37	14	72169179	72169179	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	72169179	G	A	72169179	2	1	562	1	0	0	0	0	0	0	0	1	14342	1074	38	1		1	SIPA1L1	14	72169179	Silent	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	13338132	72169179	35180361	69	33000											
GOLGA5	9950	hgsc.bcm.edu	37	14	93276655	93276655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	93276655	T	C	93276655	3	2	562	1	0	0	0	0	1	0	0	0	6563	1841	64	3	1063	3	GOLGA5	14	93276655	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	21107476	93276655	14072885	70	33001											
PLCB2	5330	hgsc.bcm.edu;ucsc.edu	37	15	40591379	40591379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	40591379	G	T	40591379	3	4	562	1	0	0	0	0	1	0	0	0	12035	1165	41	4	3024	4	PLCB2	15	40591379	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10		40591379	61940013	71	33002											
DMXL2	23312	hgsc.bcm.edu;ucsc.edu	37	15	51790800	51790800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	51790800	C	A	51790800	3	1	562	1	0	0	0	0	1	0	0	0	4597	565	20	4	4596	4	DMXL2	15	51790800	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	11199421	51790800	50740592	72	33003											
NEDD4	4734	hgsc.bcm.edu	37	15	56126438	56126438	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	56126438	T	G	56126438	3	3	562	1	0	0	0	0	1	0	0	0	10317	1783	62	5	413	5	NEDD4	15	56126438	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	4335638	56126438	46404954	73	33004											
LIPC	3990	hgsc.bcm.edu;ucsc.edu	37	15	58838059	58838059	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	58838059	C	T	58838059	2	4	562	1	0	0	0	0	0	0	0	1	8827	767	27	1		1	LIPC	15	58838059	Silent	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	2711621	58838059	43693333	74	33005											
APH1B	83464	hgsc.bcm.edu	37	15	63571478	63571478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	63571478	G	T	63571478	3	4	562	1	0	0	0	0	1	0	0	0	772	1377	48	4	238	4	APH1B	15	63571478	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	4733419	63571478	38959914	75	33006											
DNAH3	55567	hgsc.bcm.edu;ucsc.edu	37	16	21065766	21065766	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	21065766	C	T	21065766	2	4	562	1	0	0	0	0	0	0	0	1	4605	610	22	2		2	DNAH3	16	21065766	Silent	SNP	C	TCGA-CZ-4861-01A-01D-1373-10		21065766	69288987	76	33007											
CES2	8824	hgsc.bcm.edu;ucsc.edu	37	16	66972074	66972074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	66972074	C	A	66972074	3	1	562	1	0	0	0	0	1	0	0	0	3272	796	28	4	409	4	CES2	16	66972074	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	45906308	66972074	23382679	77	33008											
ADAMTS18	170692	hgsc.bcm.edu;ucsc.edu	37	16	77465292	77465292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	77465292	G	T	77465292	3	4	562	1	0	0	0	0	1	0	0	0	263	971	34	4	3354	4	ADAMTS18	16	77465292	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	10493218	77465292	12889461	78	33009											
FANCA	2175	hgsc.bcm.edu;ucsc.edu	37	16	89807257	89807257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	89807257	G	T	89807257	3	4	562	1	0	0	0	0	1	0	0	0	5669	933	33	4	608	4	FANCA	16	89807257	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	12341965	89807257	547496	79	33010											
USP6	9098	hgsc.bcm.edu	37	17	5066236	5066236	+	Silent	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	5066236	C	A	5066236	2	1	562	1	0	0	0	0	0	0	0	1	17098	668	24	4		4	USP6	17	5066236	Silent	SNP	C	TCGA-CZ-4861-01A-01D-1373-10		5066236	76128974	80	33011											
DNAH2	146754	hgsc.bcm.edu;ucsc.edu	37	17	7671377	7671377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	7671377	A	G	7671377	3	3	562	1	0	0	0	0	1	0	0	0	4604	363	13	3	3921	3	DNAH2	17	7671377	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	2605141	7671377	73523833	81	33012											
TOP3A	7156	hgsc.bcm.edu;ucsc.edu	37	17	18205997	18205997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	18205997	C	A	18205997	3	1	562	1	0	0	0	0	1	0	0	0	16379	912	32	4	2521	4	TOP3A	17	18205997	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	10534620	18205997	62989213	82	33013											
EZH1	2145	hgsc.bcm.edu;ucsc.edu	37	17	40857163	40857163	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	40857163	G	A	40857163	2	1	562	1	0	0	0	0	0	0	0	1	5335	1306	46	2		2	EZH1	17	40857163	Silent	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	22651166	40857163	40338047	83	33014											
ZCCHC2	54877	hgsc.bcm.edu;ucsc.edu	37	18	60242638	60242638	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	60242638	T	C	60242638	2	2	562	1	0	0	0	0	0	0	0	1	17599	1442	50	3		3	ZCCHC2	18	60242638	Silent	SNP	T	TCGA-CZ-4861-01A-01D-1373-10		60242638	17834610	84	33015											
CDH19	28513	hgsc.bcm.edu;ucsc.edu	37	18	64172301	64172301	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	64172301	G	A	64172301	2	1	562	1	0	0	0	0	0	0	0	1	3106	1190	42	2		2	CDH19	18	64172301	Silent	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	3929663	64172301	13904947	85	33016											
SMARCA4	6597	hgsc.bcm.edu	37	19	11145751	11145751	+	Silent	SNP	C	C	A	rs143621108	alternate_allele	TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	11145751	C	A	11145751	2	1	562	1	0	0	0	0	0	0	0	1	14783	610	22	4		4	SMARCA4	19	11145751	Silent	SNP	C	TCGA-CZ-4861-01A-01D-1373-10		11145751	47983232	86	33017											
ZNF441	126068	hgsc.bcm.edu;ucsc.edu	37	19	11892094	11892094	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	11892094	T	C	11892094	2	2	562	1	0	0	0	0	0	0	0	1	17926	1538	54	3		3	ZNF441	19	11892094	Silent	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	746343	11892094	47236889	87	33018											
CACNA1A	773	hgsc.bcm.edu;ucsc.edu	37	19	13419273	13419273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	13419273	C	T	13419273	3	4	562	1	0	0	0	0	1	0	0	0	2540	536	19	1	6033	1	CACNA1A	19	13419273	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	1527179	13419273	45709710	88	33019											
NLRP5	126206	hgsc.bcm.edu	37	19	56565046	56565046	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	56565046	G	A	56565046	2	1	562	1	0	0	0	0	0	0	0	1	10487	1364	48	2		2	NLRP5	19	56565046	Silent	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	43145773	56565046	2563937	89	33020											
PHF20	51230	hgsc.bcm.edu	37	20	34451134	34451134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	34451134	A	G	34451134	3	3	562	1	0	0	0	0	1	0	0	0	11838	14	1	3	638	3	PHF20	20	34451134	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10		34451134	28574386	90	33021											
TUBGCP6	85378	hgsc.bcm.edu	37	22	50682273	50682273	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	50682273	A	T	50682273	3	4	562	1	0	0	0	0	1	0	0	0	16782	43	2	5	4943	5	TUBGCP6	22	50682273	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10		50682273	622293	91	33022											
PDHA1	5160	hgsc.bcm.edu;ucsc.edu	37	X	19369447	19369447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	19369447	C	G	19369447	3	3	562	1	0	0	0	0	1	0	0	0	11671	913	32	4	493	4	PDHA1	23	19369447	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10		19369447	135901113	92	33023											
MAGEB6	158809	hgsc.bcm.edu;ucsc.edu	37	X	26212893	26212893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	26212893	C	A	26212893	3	1	562	1	0	0	0	0	1	0	0	0	9186	854	30	4	932	4	MAGEB6	23	26212893	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	6843446	26212893	129057667	93	33024											
USP9X	8239	hgsc.bcm.edu;ucsc.edu	37	X	41025335	41025335	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	41025335	A	G	41025335	2	3	562	1	0	0	0	0	0	0	0	1	17102	359	13	3		3	USP9X	23	41025335	Silent	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	14812442	41025335	114245225	94	33025											
SYP	6855	hgsc.bcm.edu	37	X	49049790	49049790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	49049790	T	C	49049790	3	2	562	1	0	0	0	0	1	0	0	0	15473	1580	55	3	395	3	SYP	23	49049790	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	8024455	49049790	106220770	95	33026											
MAGED1	9500	hgsc.bcm.edu;ucsc.edu	37	X	51637859	51637859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	G	51637859	A	G	51637859	3	3	562	1	0	0	0	0	1	0	0	0	9190	391	14	3	188	3	MAGED1	23	51637859	Missense_Mutation	SNP	A	TCGA-CZ-4861-01A-01D-1373-10	2588069	51637859	103632701	96	33027											
MED12	9968	hgsc.bcm.edu	37	X	70352801	70352801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	70352801	C	T	70352801	3	4	562	1	0	0	0	0	1	0	0	0	9435	710	25	2	4648	2	MED12	23	70352801	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10	18714942	70352801	84917759	97	33028											
RNF128	79589	hgsc.bcm.edu	37	X	105970574	105970574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	C	105970574	T	C	105970574	3	2	562	1	0	0	0	0	1	0	0	0	13449	1667	58	3	843	3	RNF128	23	105970574	Missense_Mutation	SNP	T	TCGA-CZ-4861-01A-01D-1373-10	35617773	105970574	49299986	98	33029											
HCFC1	3054	hgsc.bcm.edu	37	X	153236183	153236183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	T	153236183	G	T	153236183	3	4	562	1	0	0	0	0	1	0	0	0	6998	1116	39	4	6102	4	HCFC1	23	153236183	Missense_Mutation	SNP	G	TCGA-CZ-4861-01A-01D-1373-10	47265609	153236183	2034377	99	33030											
KDM5D	8284	hgsc.bcm.edu	37	Y	21868427	21868427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4861-01A-01D-1373-10	TCGA-CZ-4861-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	b0fe8da0-5e6a-4893-ac30-fff975c80b50	3f6e4528-5418-418d-a5a6-2fe960a857fe	A	21868427	C	A	21868427	3	1	562	1	0	0	0	0	1	0	0	0	8143	623	22	4	458	4	KDM5D	24	21868427	Missense_Mutation	SNP	C	TCGA-CZ-4861-01A-01D-1373-10		21868427	37505139	100	33031											
NKAIN1	79570	hgsc.bcm.edu	37	1	31654716	31654716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	31654716	G	T	31654716	3	4	563	1	0	0	0	0	1	0	0	0	10442	1000	35	4	26	4	NKAIN1	1	31654716	Missense_Mutation	SNP	G	TCGA-CZ-4862-01A-01D-1373-10		31654716	217595905	1	33032											
TMEM39B	55116	hgsc.bcm.edu	37	1	32557363	32557363	+	Silent	SNP	G	G	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	32557363	G	C	32557363	2	2	563	1	0	0	0	0	0	0	0	1	16174	1219	43	4		4	TMEM39B	1	32557363	Silent	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	902647	32557363	216693258	2	33033											
EIF2C1	26523	hgsc.bcm.edu	37	1	36358772	36358772	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	36358772	T	C	36358772	2	2	563	1	0	0	0	0	0	0	0	1	5007	1800	63	3		3	EIF2C1	1	36358772	Silent	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	3801409	36358772	212891849	3	33034											
RRAGC	64121	hgsc.bcm.edu	37	1	39305249	39305249	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	39305249	A	G	39305249	2	3	563	1	0	0	0	0	0	0	0	1	13687	214	8	3		3	RRAGC	1	39305249	Silent	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	2946477	39305249	209945372	4	33035											
LGR6	59352	hgsc.bcm.edu	37	1	202273686	202273686	+	Splice_Site	SNP	G	G	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	202273686	G	A	202273686	5	1	563	1	0	0	0	0	0	0	1	0	8765	1014	35	2	1187	2	LGR6	1	202273686	Splice_Site	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	162968437	202273686	46976935	5	33036											
KDM5B	10765	hgsc.bcm.edu	37	1	202710614	202710614	+	Silent	SNP	T	T	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	202710614	T	G	202710614	2	3	563	1	0	0	0	0	0	0	0	1	8141	1512	53	5		5	KDM5B	1	202710614	Silent	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	436928	202710614	46540007	6	33037											
KCNS3	3790	hgsc.bcm.edu	37	2	18113361	18113362	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	18113362	-	T	18113361	7	5	563	1	0	1	1	0	0	0	0	0	8097	1270	44	0	1088	0	KCNS3	2	18113361	Frame_Shift_Ins	INS	-	TCGA-CZ-4862-01A-01D-1373-10		18113361	225086012	7	33038											
LRP2	4036	hgsc.bcm.edu;ucsc.edu	37	2	170003359	170003359	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	170003359	A	T	170003359	3	4	563	1	0	0	0	0	1	0	0	0	8963	72	3	5	1310	5	LRP2	2	170003359	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	151889998	170003359	73196014	8	33039											
TTLL4	9654	hgsc.bcm.edu;ucsc.edu	37	2	219612071	219612071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	219612071	A	G	219612071	3	3	563	1	0	0	0	0	1	0	0	0	16741	72	3	3	2255	3	TTLL4	2	219612071	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	49608712	219612071	23587302	9	33040											
TMEM198	130612	hgsc.bcm.edu	37	2	220414473	220414473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	220414473	G	A	220414473	3	1	563	1	0	0	0	0	1	0	0	0	16131	1232	43	2	994	2	TMEM198	2	220414473	Missense_Mutation	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	802402	220414473	22784900	10	33041											
GPR35	2859	hgsc.bcm.edu	37	2	241570127	241570127	+	Missense_Mutation	SNP	C	C	T	rs12468485	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	241570127	C	T	241570127	3	4	563	1	0	0	0	0	1	0	0	0	6697	536	19	1	760	1	GPR35	2	241570127	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	21155654	241570127	1629246	11	33042											
IL17RC	84818	hgsc.bcm.edu	37	3	9974300	9974300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	9974300	A	G	9974300	3	3	563	1	0	0	0	0	1	0	0	0	7648	131	5	3	1675	3	IL17RC	3	9974300	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10		9974300	188048130	12	33043											
COL7A1	1294	hgsc.bcm.edu	37	3	48609842	48609842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	48609842	C	T	48609842	3	4	563	1	0	0	0	0	1	0	0	0	3706	681	24	2	2005	2	COL7A1	3	48609842	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	38635542	48609842	149412588	13	33044											
APEH	327	hgsc.bcm.edu	37	3	49716331	49716331	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	49716331	G	C	49716331	3	2	563	1	0	0	0	0	1	0	0	0	768	1270	44	4	1153	4	APEH	3	49716331	Missense_Mutation	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	1106489	49716331	148306099	14	33045											
ALAS1	211	hgsc.bcm.edu	37	3	52239907	52239907	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	52239907	G	C	52239907	3	2	563	1	0	0	0	0	1	0	0	0	484	1349	47	4	871	4	ALAS1	3	52239907	Missense_Mutation	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	2523576	52239907	145782523	15	33046											
PHF7	51533	hgsc.bcm.edu	37	3	52454991	52454991	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	52454991	A	G	52454991	2	3	563	1	0	0	0	0	0	0	0	1	11846	446	16	3		3	PHF7	3	52454991	Silent	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	215084	52454991	145567439	16	33047											
NFKBIZ	64332	hgsc.bcm.edu	37	3	101576021	101576021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	101576021	T	A	101576021	3	1	563	1	0	0	0	0	1	0	0	0	10390	1461	51	5	1967	5	NFKBIZ	3	101576021	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	49121030	101576021	96446409	17	33048											
FAM190A	0	hgsc.bcm.edu	37	4	91230368	91230368	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	91230368	G	A	91230368	2	1	563	1	0	0	0	0	0	0	0	1	5525	1103	39	1		1	FAM190A	4	91230368	Silent	SNP	G	TCGA-CZ-4862-01A-01D-1373-10		91230368	99923908	18	33049											
ERBB2IP	55914	hgsc.bcm.edu	37	5	65321792	65321792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	65321792	A	G	65321792	3	3	563	1	0	0	0	0	1	0	0	0	5209	188	7	3	1045	3	ERBB2IP	5	65321792	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10		65321792	115593468	19	33050											
PDE8B	8622	hgsc.bcm.edu	37	5	76703260	76703260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	76703260	C	T	76703260	3	4	563	1	0	0	0	0	1	0	0	0	11661	507	18	2	1393	2	PDE8B	5	76703260	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	11381468	76703260	104212000	20	33051											
RAD50	10111	hgsc.bcm.edu	37	5	131927632	131927632	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	131927632	T	A	131927632	3	1	563	1	0	0	0	0	1	0	0	0	12997	1722	60	5	1741	5	RAD50	5	131927632	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	55224372	131927632	48987628	21	33052											
FAT2	2196	hgsc.bcm.edu	37	5	150924102	150924102	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	150924102	G	T	150924102	2	4	563	1	0	0	0	0	0	0	0	1	5697	1115	39	4		4	FAT2	5	150924102	Silent	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	18996470	150924102	29991158	22	33053											
POLR1C	9533	hgsc.bcm.edu	37	6	43489006	43489006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	43489006	T	G	43489006	3	3	563	1	0	0	0	0	1	0	0	0	12218	1606	56	5	1043	5	POLR1C	6	43489006	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10		43489006	127626061	23	33054											
DST	667	hgsc.bcm.edu;ucsc.edu	37	6	56418199	56418199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	56418199	A	G	56418199	3	3	563	1	0	0	0	0	1	0	0	0	4785	275	10	3	8165	3	DST	6	56418199	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	12929193	56418199	114696868	24	33055											
SFRS18	0	hgsc.bcm.edu;ucsc.edu	37	6	99858629	99858629	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	99858629	C	T	99858629	2	4	563	1	0	0	0	0	0	0	0	1	14187	564	20	2		2	SFRS18	6	99858629	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	43440430	99858629	71256438	25	33056											
ITGB8	3696	hgsc.bcm.edu	37	7	20371478	20371478	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	20371478	C	T	20371478	4	4	563	1	0	0	0	0	0	1	0	0	7908	711	25	2	51	2	ITGB8	7	20371478	Nonsense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10		20371478	138767185	26	33057											
OGDH	4967	hgsc.bcm.edu;ucsc.edu	37	7	44687318	44687318	+	Silent	SNP	C	C	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	44687318	C	A	44687318	2	1	563	1	0	0	0	0	0	0	0	1	10846	668	24	4		4	OGDH	7	44687318	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	24315840	44687318	114451345	27	33058											
ZNF107	51427	hgsc.bcm.edu	37	7	64168486	64168486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	64168486	T	C	64168486	3	2	563	1	0	0	0	0	1	0	0	0	17727	1754	61	3	1810	3	ZNF107	7	64168486	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	19481168	64168486	94970177	28	33059											
ARHGEF10	9639	hgsc.bcm.edu;ucsc.edu	37	8	1881967	1881967	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	1881967	T	G	1881967	3	3	563	1	0	0	0	0	1	0	0	0	894	1478	51	5	3179	5	ARHGEF10	8	1881967	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10		1881967	144482055	29	33060											
CSMD1	64478	hgsc.bcm.edu;ucsc.edu	37	8	3046465	3046465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	3046465	C	T	3046465	3	4	563	1	0	0	0	0	1	0	0	0	3946	661	23	1	5371	1	CSMD1	8	3046465	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	1164498	3046465	143317557	30	33061											
TCEB1	6921	ucsc.edu	37	8	74858969	74858969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	A	T	A	A	Unknown	Valid	Somatic	.	WXS	PGM	.	.	SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	74858969	A	T	74858969	3	4	563	1	0	0	0	0	1	0	0	0	15691	391	14	5	107	5	TCEB1	8	74858969	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	71812504	74858969	71505053	31	33062											
RBM12B	389677	hgsc.bcm.edu	37	8	94746443	94746443	+	Silent	SNP	A	A	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	94746443	A	C	94746443	2	2	563	1	0	0	0	0	0	0	0	1	13127	262	10	5		5	RBM12B	8	94746443	Silent	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	19887474	94746443	51617579	32	33063											
C9orf3	84909	hgsc.bcm.edu	37	9	97823000	97823000	+	Missense_Mutation	SNP	C	C	T	rs187186964	by1000genomes;alternate_allele	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	97823000	C	T	97823000	3	4	563	1	0	0	0	0	1	0	0	0	2479	797	28	2	1885	2	C9orf3	9	97823000	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10		97823000	43390431	33	33064											
RAD23B	5887	hgsc.bcm.edu	37	9	110084347	110084348	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	-	110084348	GG	-	110084347	7	5	563	1	0	1	0	1	0	0	0	0	12996	1335	47	0	791	0	RAD23B	9	110084347	Frame_Shift_Del	DEL	GG	TCGA-CZ-4862-01A-01D-1373-10	12261347	110084347	31129084	34	33065											
PTPN3	5774	hgsc.bcm.edu	37	9	112151594	112151594	+	Silent	SNP	G	G	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	112151594	G	C	112151594	2	2	563	1	0	0	0	0	0	0	0	1	12802	987	35	4		4	PTPN3	9	112151594	Silent	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	2067247	112151594	29061837	35	33066											
RALGPS1	9649	hgsc.bcm.edu	37	9	129974994	129974994	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	129974994	A	C	129974994	3	2	563	1	0	0	0	0	1	0	0	0	13030	14	1	5	1500	5	RALGPS1	9	129974994	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	17823400	129974994	11238437	36	33067											
SFTPD	6441	hgsc.bcm.edu	37	10	81702585	81702585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	81702585	C	T	81702585	3	4	563	1	0	0	0	0	1	0	0	0	14206	565	20	2	901	2	SFTPD	10	81702585	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10		81702585	53832162	37	33068											
CARS	833	hgsc.bcm.edu	37	11	3022346	3022346	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	3022346	A	C	3022346	3	2	563	1	0	0	0	0	1	0	0	0	2659	172	6	5	5	5	CARS	11	3022346	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10		3022346	131984170	38	33069											
OR51V1	283111	hgsc.bcm.edu	37	11	5221676	5221676	+	Silent	SNP	G	G	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	5221676	G	C	5221676	2	2	563	1	0	0	0	0	0	0	0	1	11114	1335	47	4		4	OR51V1	11	5221676	Silent	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	2199330	5221676	129784840	39	33070											
TRIM34	53840	hgsc.bcm.edu	37	11	5653647	5653647	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	5653647	A	T	5653647	3	4	563	1	0	0	0	0	1	0	0	0	16520	275	10	5	88	5	TRIM34	11	5653647	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	431971	5653647	129352869	40	33071											
PTPN5	84867	hgsc.bcm.edu	37	11	18751361	18751361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	18751361	C	T	18751361	3	4	563	1	0	0	0	0	1	0	0	0	12804	623	22	2	375	2	PTPN5	11	18751361	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	13097714	18751361	116255155	41	33072											
PDHX	8050	hgsc.bcm.edu	37	11	35016594	35016594	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	35016594	C	T	35016594	2	4	563	1	0	0	0	0	0	0	0	1	11674	564	20	2		2	PDHX	11	35016594	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	16265233	35016594	99989922	42	33073											
DSCAML1	57453	hgsc.bcm.edu	37	11	117299382	117299382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	117299382	G	C	117299382	3	2	563	1	0	0	0	0	1	0	0	0	4771	1058	37	4	341	4	DSCAML1	11	117299382	Missense_Mutation	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	82282788	117299382	17707134	43	33074											
NAV3	89795	hgsc.bcm.edu	37	12	78401149	78401149	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	78401149	A	C	78401149	3	2	563	1	0	0	0	0	1	0	0	0	10192	14	1	5	1861	5	NAV3	12	78401149	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10		78401149	55450746	44	33075											
ELK3	2004	hgsc.bcm.edu	37	12	96641322	96641322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	96641322	T	G	96641322	3	3	563	1	0	0	0	0	1	0	0	0	5062	1580	55	5	818	5	ELK3	12	96641322	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	18240173	96641322	37210573	45	33076											
RBM19	9904	hgsc.bcm.edu	37	12	114397159	114397159	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	114397159	C	T	114397159	2	4	563	1	0	0	0	0	0	0	0	1	13134	610	22	2		2	RBM19	12	114397159	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	17755837	114397159	19454736	46	33077											
MYH6	4624	hgsc.bcm.edu	37	14	23865529	23865529	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	23865529	A	C	23865529	3	2	563	1	0	0	0	0	1	0	0	0	10045	304	11	5	3506	5	MYH6	14	23865529	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10		23865529	83484011	47	33078											
CTAGE5	4253	hgsc.bcm.edu	37	14	39783949	39783949	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	39783949	A	G	39783949	2	3	563	1	0	0	0	0	0	0	0	1	3996	291	11	3		3	CTAGE5	14	39783949	Silent	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	15918420	39783949	67565591	48	33079											
ZFYVE26	23503	hgsc.bcm.edu	37	14	68256097	68256097	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	68256097	A	G	68256097	2	3	563	1	0	0	0	0	0	0	0	1	17680	11	1	3		3	ZFYVE26	14	68256097	Silent	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	28472148	68256097	39093443	49	33080											
SIPA1L1	26037	hgsc.bcm.edu	37	14	72055087	72055087	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	72055087	T	C	72055087	2	2	563	1	0	0	0	0	0	0	0	1	14342	1538	54	3		3	SIPA1L1	14	72055087	Silent	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	3798990	72055087	35294453	50	33081											
C14orf153	0	hgsc.bcm.edu	37	14	104053676	104053676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	104053676	T	C	104053676	3	2	563	1	0	0	0	0	1	0	0	0	1755	1841	64	3	504	3	C14orf153	14	104053676	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	31998589	104053676	3295864	51	33082											
CCNDBP1	23582	hgsc.bcm.edu	37	15	43478362	43478362	+	Silent	SNP	T	T	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	43478362	T	A	43478362	2	1	563	1	0	0	0	0	0	0	0	1	2921	1567	55	5		5	CCNDBP1	15	43478362	Silent	SNP	T	TCGA-CZ-4862-01A-01D-1373-10		43478362	59053030	52	33083											
PRTG	283659	hgsc.bcm.edu	37	15	56032872	56032872	+	Silent	SNP	G	G	A	rs77118243	byfrequency;by1000genomes	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	56032872	G	A	56032872	2	1	563	1	0	0	0	0	0	0	0	1	12648	963	34	2		2	PRTG	15	56032872	Silent	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	12554510	56032872	46498520	53	33084											
CGNL1	84952	hgsc.bcm.edu	37	15	57816814	57816814	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	57816814	C	T	57816814	2	4	563	1	0	0	0	0	0	0	0	1	3306	610	22	2		2	CGNL1	15	57816814	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	1783942	57816814	44714578	54	33085											
BNC1	646	hgsc.bcm.edu	37	15	83933199	83933199	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	83933199	C	T	83933199	2	4	563	1	0	0	0	0	0	0	0	1	1474	680	24	2		2	BNC1	15	83933199	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	26116385	83933199	18598193	55	33086											
ZNF710	374655	hgsc.bcm.edu;ucsc.edu	37	15	90616441	90616441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	90616441	A	G	90616441	3	3	563	1	0	0	0	0	1	0	0	0	18127	275	10	3	1603	3	ZNF710	15	90616441	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	6683242	90616441	11914951	56	33087											
ABCA3	21	hgsc.bcm.edu	37	16	2376045	2376045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	2376045	C	G	2376045	3	3	563	1	0	0	0	0	1	0	0	0	33	912	32	4	4945	4	ABCA3	16	2376045	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10		2376045	87978708	57	33088											
UBN1	29855	hgsc.bcm.edu	37	16	4924863	4924863	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	4924863	A	C	4924863	3	2	563	1	0	0	0	0	1	0	0	0	16904	159	6	5	2506	5	UBN1	16	4924863	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	2548818	4924863	85429890	58	33089											
SPN	6693	hgsc.bcm.edu	37	16	29675507	29675507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	29675507	C	T	29675507	3	4	563	1	0	0	0	0	1	0	0	0	15085	536	19	1	460	1	SPN	16	29675507	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	24750644	29675507	60679246	59	33090											
MBTPS1	8720	hgsc.bcm.edu	37	16	84089720	84089720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	84089720	T	C	84089720	3	2	563	1	0	0	0	0	1	0	0	0	9368	1609	56	3	314	3	MBTPS1	16	84089720	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	54414213	84089720	6265033	60	33091											
PIK3R5	23533	hgsc.bcm.edu	37	17	8792003	8792003	+	Silent	SNP	C	C	G	rs9915880	bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	8792003	C	G	8792003	2	3	563	1	0	0	0	0	0	0	0	1	11929	639	23	4		4	PIK3R5	17	8792003	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10		8792003	72403207	61	33092											
SLC16A5	9121	hgsc.bcm.edu	37	17	73096580	73096580	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	73096580	C	T	73096580	2	4	563	1	0	0	0	0	0	0	0	1	14424	610	22	2		2	SLC16A5	17	73096580	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	64304577	73096580	8098630	62	33093											
NFATC1	4772	hgsc.bcm.edu	37	18	77211777	77211777	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	77211777	C	T	77211777	2	4	563	1	0	0	0	0	0	0	0	1	10368	680	24	2		2	NFATC1	18	77211777	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10		77211777	865471	63	33094											
ZNF333	84449	hgsc.bcm.edu	37	19	14829458	14829458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	14829458	A	C	14829458	3	2	563	1	0	0	0	0	1	0	0	0	17862	159	6	5	1361	5	ZNF333	19	14829458	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10		14829458	44299525	64	33095											
B3GNT8	374907	hgsc.bcm.edu	37	19	41932063	41932063	+	Silent	SNP	A	A	G	rs45563938	bycluster;byfrequency;by1000genomes	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	41932063	A	G	41932063	2	3	563	1	0	0	0	0	0	0	0	1	1263	156	6	3		3	B3GNT8	19	41932063	Silent	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	27102605	41932063	17196920	65	33096											
ZHX3	23051	hgsc.bcm.edu	37	20	39832082	39832082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	39832082	A	G	39832082	3	3	563	1	0	0	0	0	1	0	0	0	17689	72	3	3	1403	3	ZHX3	20	39832082	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10		39832082	23193438	66	33097											
RBM38	55544	hgsc.bcm.edu	37	20	55968368	55968368	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	55968368	C	G	55968368	3	3	563	1	0	0	0	0	1	0	0	0	13145	507	18	4	164	4	RBM38	20	55968368	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	16136286	55968368	7057152	67	33098											
CRYAA	1409	hgsc.bcm.edu;ucsc.edu	37	21	44589294	44589294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	44589294	G	A	44589294	3	1	563	1	0	0	0	0	1	0	0	0	3907	1059	37	1	87	1	CRYAA	21	44589294	Missense_Mutation	SNP	G	TCGA-CZ-4862-01A-01D-1373-10		44589294	3540601	68	33099											
SAMM50	25813	hgsc.bcm.edu;ucsc.edu	37	22	44386258	44386258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	44386258	G	A	44386258	3	1	563	1	0	0	0	0	1	0	0	0	13842	1145	40	1	1390	1	SAMM50	22	44386258	Missense_Mutation	SNP	G	TCGA-CZ-4862-01A-01D-1373-10		44386258	6918308	69	33100											
PKDREJ	10343	hgsc.bcm.edu	37	22	46656257	46656257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	46656257	T	C	46656257	3	2	563	1	0	0	0	0	1	0	0	0	11977	1812	63	3	3802	3	PKDREJ	22	46656257	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	2269999	46656257	4648309	70	33101											
HDAC10	83933	hgsc.bcm.edu	37	22	50685379	50685379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	50685379	G	A	50685379	3	1	563	1	0	0	0	0	1	0	0	0	7012	1319	46	2	594	2	HDAC10	22	50685379	Missense_Mutation	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	4029122	50685379	619187	71	33102											
ARSD	414	hgsc.bcm.edu	37	X	2835993	2835993	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	2835993	G	A	2835993	2	1	563	1	0	0	0	0	0	0	0	1	989	991	35	2		2	ARSD	23	2835993	Silent	SNP	G	TCGA-CZ-4862-01A-01D-1373-10		2835993	152434567	72	33103	423	2	1	67		4	3	55	N	G_C	9.318457e-09
ARSD	414	hgsc.bcm.edu	37	X	2835995	2835995	+	Missense_Mutation	SNP	C	C	A	rs150899882	byfrequency	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	A	2835995	C	A	2835995	3	1	563	1	0	0	0	0	1	0	0	0	989	710	25	4	1245	4	ARSD	23	2835995	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	2	2835995	152434565	73	33104	423	2	1	67		4	3	55	N	G_C	9.318457e-09
ARSD	414	hgsc.bcm.edu	37	X	2836007	2836007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	2836007	G	C	2836007	3	2	563	1	0	0	0	0	1	0	0	0	989	1203	42	4	1257	4	ARSD	23	2836007	Missense_Mutation	SNP	G	TCGA-CZ-4862-01A-01D-1373-10	12	2836007	152434553	74	33105			1	67		4	3	55	N	G_C	9.318457e-09
ARSD	414	hgsc.bcm.edu	37	X	2836047	2836047	+	Missense_Mutation	SNP	C	C	T	rs67359049	bycluster;byfrequency;by1000genomes	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	2836047	C	T	2836047	3	4	563	1	0	0	0	0	1	0	0	0	989	652	23	1	1297	1	ARSD	23	2836047	Missense_Mutation	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	40	2836047	152434513	75	33106			1	67		4	3	55	N	G_C	9.318457e-09
DMD	1756	hgsc.bcm.edu	37	X	31496341	31496341	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	G	31496341	T	G	31496341	3	3	563	1	0	0	0	0	1	0	0	0	4582	1812	63	5	2436	5	DMD	23	31496341	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	28660294	31496341	123774219	76	33107											
HUWE1	10075	hgsc.bcm.edu	37	X	53577912	53577912	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	53577912	A	T	53577912	3	4	563	1	0	0	0	0	1	0	0	0	7468	188	7	5	3869	5	HUWE1	23	53577912	Missense_Mutation	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	22081571	53577912	101692648	77	33108											
LRCH2	57631	hgsc.bcm.edu	37	X	114357118	114357118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	114357118	T	C	114357118	3	2	563	1	0	0	0	0	1	0	0	0	8940	1435	50	3	155	3	LRCH2	23	114357118	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	60779206	114357118	40913442	78	33109	424	2									
LRCH2	57631	hgsc.bcm.edu	37	X	114357120	114357120	+	Silent	SNP	A	A	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	114357120	A	T	114357120	2	4	563	1	0	0	0	0	0	0	0	1	8940	117	5	5		5	LRCH2	23	114357120	Silent	SNP	A	TCGA-CZ-4862-01A-01D-1373-10	2	114357120	40913440	79	33110	424	2									
MAGEC1	9947	hgsc.bcm.edu	37	X	140993864	140993864	+	Missense_Mutation	SNP	T	T	C	rs34836042	bycluster	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	C	140993864	T	C	140993864	3	2	563	1	0	0	0	0	1	0	0	0	9187	1841	64	3	680	3	MAGEC1	23	140993864	Missense_Mutation	SNP	T	TCGA-CZ-4862-01A-01D-1373-10	26636744	140993864	14276696	80	33111											
EMD	2010	hgsc.bcm.edu	37	X	153609311	153609311	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			SOLID	d6c89ca7-bc39-4554-bcce-e355478d90ff	8f6f7243-65b1-4107-a05b-eaf77af0766a	T	153609311	C	T	153609311	2	4	563	1	0	0	0	0	0	0	0	1	5089	581	21	2		2	EMD	23	153609311	Silent	SNP	C	TCGA-CZ-4862-01A-01D-1373-10	12615447	153609311	1661249	81	33112											
MYCL1	4610	broad.mit.edu;hgsc.bcm.edu	37	1	40363317	40363317	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	C	40363317	A	C	40363317	3	2	564	1	0	0	0	0	1	0	0	0	10027	40	2	5	276	5	MYCL1	1	40363317	Missense_Mutation	SNP	A	TCGA-CZ-4863-01A-01D-1501-10		40363317	208887304	1	33113											
TNNI3K	51086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	74954920	74954920	+	Silent	SNP	C	C	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	74954920	C	G	74954920	2	3	564	1	0	0	0	0	0	0	0	1	16341	900	32	4		4	TNNI3K	1	74954920	Silent	SNP	C	TCGA-CZ-4863-01A-01D-1501-10	34591603	74954920	174295701	2	33114											
PKN2	5586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	89271212	89271212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	89271212	A	G	89271212	3	3	564	1	0	0	0	0	1	0	0	0	11987	449	16	3	1576	3	PKN2	1	89271212	Missense_Mutation	SNP	A	TCGA-CZ-4863-01A-01D-1501-10	14316292	89271212	159979409	3	33115											
PALMD	54873	broad.mit.edu;ucsc.edu	37	1	100155420	100155420	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	100155420	T	T	100155420	3	4	564	1	0	0	0	0	1	0	0	0	11418	855	30	2	1630	2	PALMD	1	100155420	Missense_Mutation	SNP	C	TCGA-CZ-4863-01A-01D-1501-10	10884208	100155420	149095201	4	33116											
ATP1A1	476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	116932958	116932958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	A	116932958	C	A	116932958	3	1	564	1	0	0	0	0	1	0	0	0	1128	827	29	4	1197	4	ATP1A1	1	116932958	Missense_Mutation	SNP	C	TCGA-CZ-4863-01A-01D-1501-10	16777538	116932958	132317663	5	33117											
SLC19A2	10560	hgsc.bcm.edu;ucsc.edu	37	1	169437458	169437458	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	-	169437458	C	-	169437458	7	5	564	1	0	1	0	1	0	0	0	0	14442	768	27	0	245	0	SLC19A2	1	169437458	Frame_Shift_Del	DEL	C	TCGA-CZ-4863-01A-01D-1501-10	52504500	169437458	79813163	6	33118											
TNR	7143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	175348829	175348829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	C	175348829	T	C	175348829	3	2	564	1	0	0	0	0	1	0	0	0	16350	1725	60	3	2314	3	TNR	1	175348829	Missense_Mutation	SNP	T	TCGA-CZ-4863-01A-01D-1501-10	5911371	175348829	73901792	7	33119											
SUCLG1	8802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	84660489	84660489	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	84660489	C	T	84660489	2	4	564	1	0	0	0	0	0	0	0	1	15376	564	20	2		2	SUCLG1	2	84660489	Silent	SNP	C	TCGA-CZ-4863-01A-01D-1501-10		84660489	158538884	8	33120											
XIRP2	129446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	167992508	167992508	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	C	167992508	G	C	167992508	3	2	564	1	0	0	0	0	1	0	0	0	17442	933	33	4	504	4	XIRP2	2	167992508	Missense_Mutation	SNP	G	TCGA-CZ-4863-01A-01D-1501-10	83332019	167992508	75206865	9	33121											
SLC39A10	57181	hgsc.bcm.edu;ucsc.edu	37	2	196545001	196545001	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	-	196545001	T	-	196545001	7	5	564	1	0	1	0	1	0	0	0	0	14626	1609	56	0	237	0	SLC39A10	2	196545001	Frame_Shift_Del	DEL	T	TCGA-CZ-4863-01A-01D-1501-10	28552493	196545001	46654372	10	33122											
GLB1L	79411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220101846	220101846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	220101846	A	G	220101846	3	3	564	1	0	0	0	0	1	0	0	0	6435	72	3	3	55	3	GLB1L	2	220101846	Missense_Mutation	SNP	A	TCGA-CZ-4863-01A-01D-1501-10	23556845	220101846	23097527	11	33123											
TMEM198	130612	broad.mit.edu	37	2	220413932	220413932	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	220413932	G	G	220413932	3	3	564	1	0	0	0	0	1	0	0	0	16131	1432	50	5	811	5	TMEM198	2	220413932	Missense_Mutation	SNP	T	TCGA-CZ-4863-01A-01D-1501-10	312086	220413932	22785441	12	33124											
IQCF2	389123	broad.mit.edu;ucsc.edu	37	3	51897084	51897084	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	A	51897084	A	A	51897084	3	1	564	1	0	0	0	0	1	0	0	0	7815	710	25	4	203	4	IQCF2	3	51897084	Missense_Mutation	SNP	C	TCGA-CZ-4863-01A-01D-1501-10		51897084	146125346	13	33125											
COL6A5	256076	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130098768	130098768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	130098768	C	T	130098768	3	4	564	1	0	0	0	0	1	0	0	0	3704	478	17	2	1185	2	COL6A5	3	130098768	Missense_Mutation	SNP	C	TCGA-CZ-4863-01A-01D-1501-10	78201684	130098768	67923662	14	33126											
KLHL5	51088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	39083717	39083717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	39083717	C	G	39083717	3	3	564	1	0	0	0	0	1	0	0	0	8399	884	31	4	990	4	KLHL5	4	39083717	Missense_Mutation	SNP	C	TCGA-CZ-4863-01A-01D-1501-10		39083717	152070559	15	33127											
FAT1	2195	broad.mit.edu;ucsc.edu	37	4	187629281	187629281	+	Silent	SNP	A	C	C	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	C	187629281	C	C	187629281	2	2	564	1	0	0	0	0	0	0	0	1	5696	59	3	5		5	FAT1	4	187629281	Silent	SNP	A	TCGA-CZ-4863-01A-01D-1501-10	148545564	187629281	3524995	16	33128											
ADAMTS16	170690	broad.mit.edu;ucsc.edu	37	5	5242262	5242262	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	A	5242262	A	A	5242262	3	1	564	1	0	0	0	0	1	0	0	0	261	1812	63	5	2686	5	ADAMTS16	5	5242262	Missense_Mutation	SNP	T	TCGA-CZ-4863-01A-01D-1501-10		5242262	175672998	17	33129											
DMXL1	1657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	118502425	118502425	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	118502425	A	G	118502425	2	3	564	1	0	0	0	0	0	0	0	1	4596	40	2	3		3	DMXL1	5	118502425	Silent	SNP	A	TCGA-CZ-4863-01A-01D-1501-10	113260163	118502425	62412835	18	33130											
UNC5A	90249	broad.mit.edu	37	5	176297519	176297519	+	Silent	SNP	T	C	C	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	C	176297519	C	C	176297519	2	2	564	1	0	0	0	0	0	0	0	1	17003	1693	59	3		3	UNC5A	5	176297519	Silent	SNP	T	TCGA-CZ-4863-01A-01D-1501-10	57795094	176297519	4617741	19	33131											
ENPP5	59084	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46133254	46133254	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	46133254	A	G	46133254	2	3	564	1	0	0	0	0	0	0	0	1	5135	330	12	3		3	ENPP5	6	46133254	Silent	SNP	A	TCGA-CZ-4863-01A-01D-1501-10		46133254	124981813	20	33132											
KBTBD2	25948	broad.mit.edu;ucsc.edu	37	7	32909724	32909724	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	32909724	T	T	32909724	3	4	564	1	0	0	0	0	1	0	0	0	8000	478	17	2	770	2	KBTBD2	7	32909724	Missense_Mutation	SNP	C	TCGA-CZ-4863-01A-01D-1501-10		32909724	126228939	21	33133											
FAM180A	389558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	135433271	135433271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	135433271	A	T	135433271	3	4	564	1	0	0	0	0	1	0	0	0	5511	159	6	5	475	5	FAM180A	7	135433271	Missense_Mutation	SNP	A	TCGA-CZ-4863-01A-01D-1501-10	102523547	135433271	23705392	22	33134	425	2									
FAM180A	389558	broad.mit.edu;ucsc.edu	37	7	135433272	135433272	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	A	135433272	A	A	135433272	3	1	564	1	0	0	0	0	1	0	0	0	5511	478	17	4	476	4	FAM180A	7	135433272	Missense_Mutation	SNP	C	TCGA-CZ-4863-01A-01D-1501-10	1	135433272	23705391	23	33135	425	2									
EPHB6	2051	broad.mit.edu	37	7	142562259	142562259	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	-	142562259	-	-	142562259	7	5	564	1	0	1	0	1	0	0	0	0	5180	739	26	0	711	0	EPHB6	7	142562259	Frame_Shift_Del	DEL	C	TCGA-CZ-4863-01A-01D-1501-10	7128987	142562259	16576404	24	33136											
NOM1	64434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	156761876	156761876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	156761876	T	G	156761876	3	3	564	1	0	0	0	0	1	0	0	0	10537	1722	60	5	2432	5	NOM1	7	156761876	Missense_Mutation	SNP	T	TCGA-CZ-4863-01A-01D-1501-10	14199617	156761876	2376787	25	33137											
TUSC3	7991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	15480643	15480643	+	Missense_Mutation	SNP	A	A	C	rs11545035	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	C	15480643	A	C	15480643	3	2	564	1	0	0	0	0	1	0	0	0	16790	101	4	5	199	5	TUSC3	8	15480643	Missense_Mutation	SNP	A	TCGA-CZ-4863-01A-01D-1501-10		15480643	130883379	26	33138											
TRUB2	26995	broad.mit.edu	37	9	131083994	131083994	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	C	131083994	C	C	131083994	3	2	564	1	0	0	0	0	1	0	0	0	16615	1609	56	3	898	3	TRUB2	9	131083994	Missense_Mutation	SNP	T	TCGA-CZ-4863-01A-01D-1501-10		131083994	10129437	27	33139											
PFKFB3	5209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	6268194	6268194	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	6268194	A	T	6268194	3	4	564	1	0	0	0	0	1	0	0	0	11769	420	15	5	1455	5	PFKFB3	10	6268194	Missense_Mutation	SNP	A	TCGA-CZ-4863-01A-01D-1501-10		6268194	129266553	28	33140											
FAM175B	23172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	126523420	126523420	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	C	126523420	T	C	126523420	2	2	564	1	0	0	0	0	0	0	0	1	5502	1490	52	3		3	FAM175B	10	126523420	Silent	SNP	T	TCGA-CZ-4863-01A-01D-1501-10	120255226	126523420	9011327	29	33141											
AHNAK	79026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62296732	62296732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	A	62296732	C	A	62296732	3	1	564	1	0	0	0	0	1	0	0	0	414	564	20	4	12635	4	AHNAK	11	62296732	Missense_Mutation	SNP	C	TCGA-CZ-4863-01A-01D-1501-10		62296732	72709784	30	33142											
C12orf11	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	27075598	27075598	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	27075598	A	G	27075598	2	3	564	1	0	0	0	0	0	0	0	1	1677	214	8	3		3	C12orf11	12	27075598	Silent	SNP	A	TCGA-CZ-4863-01A-01D-1501-10		27075598	106776297	31	33143											
CEP152	22995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	49048532	49048532	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	C	49048532	G	C	49048532	3	2	564	1	0	0	0	0	1	0	0	0	3250	1164	41	4	2079	4	CEP152	15	49048532	Missense_Mutation	SNP	G	TCGA-CZ-4863-01A-01D-1501-10		49048532	53482860	32	33144											
CTSH	1512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	79227327	79227327	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	A	79227327	T	A	79227327	3	1	564	1	0	0	0	0	1	0	0	0	4038	1841	64	5	641	5	CTSH	15	79227327	Missense_Mutation	SNP	T	TCGA-CZ-4863-01A-01D-1501-10	30178795	79227327	23304065	33	33145											
GLG1	2734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	74524933	74524933	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	A	74524933	T	A	74524933	3	1	564	1	0	0	0	0	1	0	0	0	6443	1551	54	5	2280	5	GLG1	16	74524933	Missense_Mutation	SNP	T	TCGA-CZ-4863-01A-01D-1501-10		74524933	15829820	34	33146											
SLC38A8	146167	broad.mit.edu	37	16	84050801	84050801	+	Silent	SNP	C	A	A	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	A	84050801	A	A	84050801	2	1	564	1	0	0	0	0	0	0	0	1	14623	610	22	4		4	SLC38A8	16	84050801	Silent	SNP	C	TCGA-CZ-4863-01A-01D-1501-10	9525868	84050801	6303952	35	33147											
SLC47A1	55244	hgsc.bcm.edu;ucsc.edu	37	17	19451355	19451355	+	Missense_Mutation	SNP	G	G	T	rs150632967	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	19451355	G	T	19451355	3	4	564	1	0	0	0	0	1	0	0	0	14660	1145	40	4	378	4	SLC47A1	17	19451355	Missense_Mutation	SNP	G	TCGA-CZ-4863-01A-01D-1501-10		19451355	61743855	36	33148											
CBX1	10951	broad.mit.edu;hgsc.bcm.edu	37	17	46148933	46148933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	A	46148933	G	A	46148933	3	1	564	1	0	0	0	0	1	0	0	0	2719	942	33	2	139	2	CBX1	17	46148933	Missense_Mutation	SNP	G	TCGA-CZ-4863-01A-01D-1501-10	26697578	46148933	35046277	37	33149											
MTMR4	9110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56573389	56573389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	56573389	A	T	56573389	3	4	564	1	0	0	0	0	1	0	0	0	9953	72	3	5	1489	5	MTMR4	17	56573389	Missense_Mutation	SNP	A	TCGA-CZ-4863-01A-01D-1501-10	10424456	56573389	24621821	38	33150											
UHRF1	29128	broad.mit.edu	37	19	4941811	4941811	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	-	4941811	-	-	4941811	7	5	564	1	0	1	0	1	0	0	0	0	16979	1116	39	0	1002	0	UHRF1	19	4941811	Frame_Shift_Del	DEL	G	TCGA-CZ-4863-01A-01D-1501-10		4941811	54187172	39	33151											
MUC16	94025	broad.mit.edu;ucsc.edu	37	19	9046549	9046549	+	Silent	SNP	A	G	G	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	G	9046549	G	G	9046549	2	3	564	1	0	0	0	0	0	0	0	1	9980	291	11	3		3	MUC16	19	9046549	Silent	SNP	A	TCGA-CZ-4863-01A-01D-1501-10	4104738	9046549	50082434	40	33152											
CRTC1	23373	broad.mit.edu	37	19	18856654	18856654	+	Silent	SNP	C	T	T	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	18856654	T	T	18856654	2	4	564	1	0	0	0	0	0	0	0	1	3901	680	24	2		2	CRTC1	19	18856654	Silent	SNP	C	TCGA-CZ-4863-01A-01D-1501-10	9810105	18856654	40272329	41	33153											
NOX1	27035	broad.mit.edu;ucsc.edu	37	X	100105317	100105317	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-4863-01A-01D-1501-10	TCGA-CZ-4863-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4286d73b-1fb9-41a3-baba-46f23100586a	1b3a35ca-6f5c-41e2-95ab-f90ff0fcec8f	T	100105317	T	T	100105317	3	4	564	1	0	0	0	0	1	0	0	0	10563	217	8	5	758	5	NOX1	23	100105317	Missense_Mutation	SNP	A	TCGA-CZ-4863-01A-01D-1501-10		100105317	55165243	42	33154											
SPEN	23013	hgsc.bcm.edu;ucsc.edu	37	1	16254657	16254658	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	-	16254658	CT	-	16254657	7	5	565	1	0	1	0	1	0	0	0	0	15050	565	20	0	1964	0	SPEN	1	16254657	Frame_Shift_Del	DEL	CT	TCGA-CZ-4865-01A-02D-1501-10		16254657	232995964	1	33155											
SPEN	23013	hgsc.bcm.edu;ucsc.edu	37	1	16255323	16255323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	16255323	A	C	16255323	3	2	565	1	0	0	0	0	1	0	0	0	15050	275	10	5	2630	5	SPEN	1	16255323	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10	666	16255323	232995298	2	33156											
MED18	54797	hgsc.bcm.edu;ucsc.edu	37	1	28660959	28660959	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	28660959	C	T	28660959	2	4	565	1	0	0	0	0	0	0	0	1	9443	813	29	2		2	MED18	1	28660959	Silent	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	12405636	28660959	220589662	3	33157											
SNRNP40	9410	hgsc.bcm.edu;ucsc.edu	37	1	31766074	31766074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	31766074	C	T	31766074	3	4	565	1	0	0	0	0	1	0	0	0	14869	884	31	1	846	1	SNRNP40	1	31766074	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	3105115	31766074	217484547	4	33158											
COL24A1	255631	hgsc.bcm.edu;ucsc.edu	37	1	86591606	86591606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	86591606	A	G	86591606	3	3	565	1	0	0	0	0	1	0	0	0	3685	420	15	3	4963	3	COL24A1	1	86591606	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10	54825532	86591606	162659015	5	33159											
PSMD4	5710	hgsc.bcm.edu;ucsc.edu	37	1	151236485	151236485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	151236485	C	T	151236485	3	4	565	1	0	0	0	0	1	0	0	0	12710	536	19	1	273	1	PSMD4	1	151236485	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	64644879	151236485	98014136	6	33160											
FCRL4	83417	hgsc.bcm.edu;ucsc.edu	37	1	157557663	157557663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	157557663	T	C	157557663	3	2	565	1	0	0	0	0	1	0	0	0	5804	1841	64	3	1029	3	FCRL4	1	157557663	Missense_Mutation	SNP	T	TCGA-CZ-4865-01A-02D-1501-10	6321178	157557663	91692958	7	33161											
UCK2	7371	hgsc.bcm.edu;ucsc.edu	37	1	165859456	165859456	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	165859456	A	T	165859456	4	4	565	1	0	0	0	0	0	1	0	0	16936	363	13	5	121	5	UCK2	1	165859456	Nonsense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10	8301793	165859456	83391165	8	33162											
ILDR2	387597	hgsc.bcm.edu;ucsc.edu	37	1	166891956	166891956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	166891956	G	A	166891956	3	1	565	1	0	0	0	0	1	0	0	0	7717	1000	35	2	846	2	ILDR2	1	166891956	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	1032500	166891956	82358665	9	33163											
DHX9	1660	hgsc.bcm.edu;ucsc.edu	37	1	182849640	182849640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	182849640	G	A	182849640	3	1	565	1	0	0	0	0	1	0	0	0	4518	1319	46	2	2603	2	DHX9	1	182849640	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	15957684	182849640	66400981	10	33164											
LYST	1130	hgsc.bcm.edu;ucsc.edu	37	1	235884146	235884146	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	235884146	A	G	235884146	2	3	565	1	0	0	0	0	0	0	0	1	9135	224	8	3		3	LYST	1	235884146	Silent	SNP	A	TCGA-CZ-4865-01A-02D-1501-10	53034506	235884146	13366475	11	33165											
TMEM17	200728	hgsc.bcm.edu;ucsc.edu	37	2	62728623	62728623	+	Splice_Site	SNP	C	C	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	62728623	C	G	62728623	5	3	565	1	0	0	0	0	0	0	1	0	16097	695	24	4	282	4	TMEM17	2	62728623	Splice_Site	SNP	C	TCGA-CZ-4865-01A-02D-1501-10		62728623	180470750	12	33166											
POLR1A	25885	hgsc.bcm.edu;ucsc.edu	37	2	86292438	86292438	+	Missense_Mutation	SNP	G	G	C	rs191928354	by1000genomes	TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	86292438	G	C	86292438	3	2	565	1	0	0	0	0	1	0	0	0	12216	1174	41	4	3229	4	POLR1A	2	86292438	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	23563815	86292438	156906935	13	33167											
KCTD18	130535	hgsc.bcm.edu;ucsc.edu	37	2	201371733	201371733	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	201371733	C	G	201371733	3	3	565	1	0	0	0	0	1	0	0	0	8112	681	24	4	1297	4	KCTD18	2	201371733	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	115079295	201371733	41827640	14	33168											
ITGB5	3693	hgsc.bcm.edu;ucsc.edu	37	3	124536468	124536468	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	124536468	A	G	124536468	2	3	565	1	0	0	0	0	0	0	0	1	7905	231	8	3		3	ITGB5	3	124536468	Silent	SNP	A	TCGA-CZ-4865-01A-02D-1501-10		124536468	73485962	15	33169											
MED12L	116931	hgsc.bcm.edu;ucsc.edu	37	3	150845653	150845653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	150845653	A	T	150845653	3	4	565	1	0	0	0	0	1	0	0	0	9436	417	15	5	452	5	MED12L	3	150845653	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10	26309185	150845653	47176777	16	33170											
UGT2B4	7363	hgsc.bcm.edu;ucsc.edu	37	4	70361487	70361487	+	Silent	SNP	T	T	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	70361487	T	C	70361487	2	2	565	1	0	0	0	0	0	0	0	1	16973	1567	55	3		3	UGT2B4	4	70361487	Silent	SNP	T	TCGA-CZ-4865-01A-02D-1501-10		70361487	120792789	17	33171											
G3BP2	9908	hgsc.bcm.edu;ucsc.edu	37	4	76572287	76572287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	76572287	G	A	76572287	3	1	565	1	0	0	0	0	1	0	0	0	6149	1348	47	2	477	2	G3BP2	4	76572287	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	6210800	76572287	114581989	18	33172											
DCHS2	54798	hgsc.bcm.edu;ucsc.edu	37	4	155157548	155157548	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	-	155157548	A	-	155157548	7	5	565	1	0	1	0	1	0	0	0	0	4290	127	5	0	1863	0	DCHS2	4	155157548	Frame_Shift_Del	DEL	A	TCGA-CZ-4865-01A-02D-1501-10	78585261	155157548	35996728	19	33173											
GZMK	3003	hgsc.bcm.edu;ucsc.edu	37	5	54326407	54326407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	54326407	G	A	54326407	3	1	565	1	0	0	0	0	1	0	0	0	6925	1261	44	2	368	2	GZMK	5	54326407	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10		54326407	126588853	20	33174											
AQPEP	206338	hgsc.bcm.edu;ucsc.edu	37	5	115350147	115350147	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	115350147	G	A	115350147	2	1	565	1	0	0	0	0	0	0	0	1	834	1132	40	1		1	AQPEP	5	115350147	Silent	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	61023740	115350147	65565113	21	33175											
FAM65B	9750	hgsc.bcm.edu;ucsc.edu	37	6	24843341	24843341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	24843341	C	G	24843341	3	3	565	1	0	0	0	0	1	0	0	0	5607	855	30	4	1587	4	FAM65B	6	24843341	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10		24843341	146271726	22	33176											
PKHD1	5314	hgsc.bcm.edu;ucsc.edu	37	6	51609213	51609213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	51609213	C	A	51609213	3	1	565	1	0	0	0	0	1	0	0	0	11978	739	26	4	2169	4	PKHD1	6	51609213	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	26765872	51609213	119505854	23	33177											
TTK	7272	hgsc.bcm.edu;ucsc.edu	37	6	80746291	80746291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	80746291	C	A	80746291	3	1	565	1	0	0	0	0	1	0	0	0	16732	478	17	4	2086	4	TTK	6	80746291	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	29137078	80746291	90368776	24	33178											
FAM162B	221303	hgsc.bcm.edu;ucsc.edu	37	6	117083156	117083156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	117083156	A	G	117083156	3	3	565	1	0	0	0	0	1	0	0	0	5479	449	16	3	122	3	FAM162B	6	117083156	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10	36336865	117083156	54031911	25	33179											
AKAP12	9590	hgsc.bcm.edu;ucsc.edu	37	6	151670340	151670340	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	-	151670340	A	-	151670340	7	5	565	1	0	1	0	1	0	0	0	0	448	247	9	0	853	0	AKAP12	6	151670340	Frame_Shift_Del	DEL	A	TCGA-CZ-4865-01A-02D-1501-10	34587184	151670340	19444727	26	33180											
C6orf211	79624	hgsc.bcm.edu;ucsc.edu	37	6	151789551	151789551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	151789551	T	C	151789551	3	2	565	1	0	0	0	0	1	0	0	0	2356	1522	53	3	650	3	C6orf211	6	151789551	Missense_Mutation	SNP	T	TCGA-CZ-4865-01A-02D-1501-10	119211	151789551	19325516	27	33181											
PLG	5340	hgsc.bcm.edu;ucsc.edu	37	6	161134106	161134106	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	161134106	A	T	161134106	3	4	565	1	0	0	0	0	1	0	0	0	12093	391	14	5	518	5	PLG	6	161134106	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10	9344555	161134106	9980961	28	33182											
STK31	56164	hgsc.bcm.edu;ucsc.edu	37	7	23827642	23827642	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	23827642	C	G	23827642	3	3	565	1	0	0	0	0	1	0	0	0	15308	478	17	4	2613	4	STK31	7	23827642	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10		23827642	135311021	29	33183											
SFRP4	6424	hgsc.bcm.edu;ucsc.edu	37	7	37953984	37953984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	37953984	G	C	37953984	3	2	565	1	0	0	0	0	1	0	0	0	14176	991	35	4	543	4	SFRP4	7	37953984	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	14126342	37953984	121184679	30	33184											
HECW1	23072	hgsc.bcm.edu;ucsc.edu	37	7	43351595	43351595	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	43351595	C	A	43351595	4	1	565	1	0	0	0	0	0	1	0	0	7049	576	20	4	267	4	HECW1	7	43351595	Nonsense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	5397611	43351595	115787068	31	33185											
NCAPG2	54892	hgsc.bcm.edu;ucsc.edu	37	7	158457439	158457439	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	-	158457439	A	-	158457439	7	5	565	1	0	1	0	1	0	0	0	0	10215	130	5	0	2008	0	NCAPG2	7	158457439	Frame_Shift_Del	DEL	A	TCGA-CZ-4865-01A-02D-1501-10	115105844	158457439	681224	32	33186											
FUT10	84750	hgsc.bcm.edu;ucsc.edu	37	8	33246865	33246865	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	33246865	A	G	33246865	2	3	565	1	0	0	0	0	0	0	0	1	6109	359	13	3		3	FUT10	8	33246865	Silent	SNP	A	TCGA-CZ-4865-01A-02D-1501-10		33246865	113117157	33	33187											
ITIH5	80760	hgsc.bcm.edu;ucsc.edu	37	10	7627983	7627983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	7627983	C	T	7627983	3	4	565	1	0	0	0	0	1	0	0	0	7914	536	19	1	1990	1	ITIH5	10	7627983	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10		7627983	127906764	34	33188											
AGAP7	653268	hgsc.bcm.edu	37	10	51485991	51485991	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	-	51485991	C	-	51485991	7	5	565	1	0	1	0	1	0	0	0	0	373	864	30	0	1808	0	AGAP7	10	51485991	Frame_Shift_Del	DEL	C	TCGA-CZ-4865-01A-02D-1501-10	43858008	51485991	84048756	35	33189											
KIF20B	9585	hgsc.bcm.edu;ucsc.edu	37	10	91497621	91497621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	91497621	A	G	91497621	3	3	565	1	0	0	0	0	1	0	0	0	8294	101	4	3	2977	3	KIF20B	10	91497621	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10	40011630	91497621	44037126	36	33190											
PLCE1	51196	hgsc.bcm.edu;ucsc.edu	37	10	95791806	95791806	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	95791806	G	T	95791806	4	4	565	1	0	0	0	0	0	1	0	0	12041	943	33	4	1005	4	PLCE1	10	95791806	Nonsense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	4294185	95791806	39742941	37	33191											
OR5B12	390191	hgsc.bcm.edu;ucsc.edu	37	11	58207098	58207098	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	58207098	A	T	58207098	3	4	565	1	0	0	0	0	1	0	0	0	11155	246	9	5	421	5	OR5B12	11	58207098	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10		58207098	76799418	38	33192											
TMEM138	51524	hgsc.bcm.edu;ucsc.edu	37	11	61135391	61135391	+	RNA	SNP	T	T	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	61135391	T	A	61135391	1	1	565	0	1	0	0	0	0	0	0	0	16065	1798	62	5		5	TMEM138	11	61135391	RNA	SNP	T	TCGA-CZ-4865-01A-02D-1501-10	2928293	61135391	73871125	39	33193											
AASDHPPT	60496	hgsc.bcm.edu;ucsc.edu	37	11	105967561	105967561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	105967561	C	T	105967561	3	4	565	1	0	0	0	0	1	0	0	0	23	681	24	2	879	2	AASDHPPT	11	105967561	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	44832170	105967561	29038955	40	33194											
MLL	4297	hgsc.bcm.edu;ucsc.edu	37	11	118375051	118375051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	118375051	C	A	118375051	3	1	565	1	0	0	0	0	1	0	0	0	9627	478	17	4	8541	4	MLL	11	118375051	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	12407490	118375051	16631465	41	33195											
GTSF1	121355	hgsc.bcm.edu;ucsc.edu	37	12	54856986	54856986	+	Silent	SNP	A	A	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	54856986	A	G	54856986	2	3	565	1	0	0	0	0	0	0	0	1	6893	157	6	3		3	GTSF1	12	54856986	Silent	SNP	A	TCGA-CZ-4865-01A-02D-1501-10		54856986	78994909	42	33196											
CDK2	1017	hgsc.bcm.edu;ucsc.edu	37	12	56360850	56360850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	56360850	A	G	56360850	3	3	565	1	0	0	0	0	1	0	0	0	3138	131	5	3	60	3	CDK2	12	56360850	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10	1503864	56360850	77491045	43	33197											
HTR2A	3356	hgsc.bcm.edu;ucsc.edu	37	13	47409628	47409628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	47409628	A	G	47409628	3	3	565	1	0	0	0	0	1	0	0	0	7448	420	15	3	659	3	HTR2A	13	47409628	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10		47409628	67760250	44	33198											
TUBGCP3	10426	hgsc.bcm.edu;ucsc.edu	37	13	113158951	113158951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	113158951	T	C	113158951	3	2	565	1	0	0	0	0	1	0	0	0	16779	1464	51	3	579	3	TUBGCP3	13	113158951	Missense_Mutation	SNP	T	TCGA-CZ-4865-01A-02D-1501-10	65749323	113158951	2010927	45	33199											
MPP5	64398	hgsc.bcm.edu;ucsc.edu	37	14	67746078	67746078	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	-	67746078	A	-	67746078	7	5	565	1	0	1	0	1	0	0	0	0	9744	304	11	0	193	0	MPP5	14	67746078	Frame_Shift_Del	DEL	A	TCGA-CZ-4865-01A-02D-1501-10		67746078	39603462	46	33200											
CCNK	8812	hgsc.bcm.edu;ucsc.edu	37	14	99969172	99969172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	99969172	G	C	99969172	3	2	565	1	0	0	0	0	1	0	0	0	2932	1029	36	4	888	4	CCNK	14	99969172	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	32223094	99969172	7380368	47	33201											
AAGAB	79719	hgsc.bcm.edu;ucsc.edu	37	15	67496448	67496448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	67496448	G	A	67496448	3	1	565	1	0	0	0	0	1	0	0	0	15	942	33	2	205	2	AAGAB	15	67496448	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10		67496448	35034944	48	33202											
ULK3	25989	hgsc.bcm.edu;ucsc.edu	37	15	75134635	75134635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	75134635	G	C	75134635	3	2	565	1	0	0	0	0	1	0	0	0	16989	962	34	4	1249	4	ULK3	15	75134635	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	7638187	75134635	27396757	49	33203											
C15orf42	0	hgsc.bcm.edu;ucsc.edu	37	15	90128974	90128974	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	90128974	C	T	90128974	2	4	565	1	0	0	0	0	0	0	0	1	1798	581	21	2		2	C15orf42	15	90128974	Silent	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	14994339	90128974	12402418	50	33204											
RLTPR	146206	hgsc.bcm.edu	37	16	67680181	67680181	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	67680181	C	T	67680181	2	4	565	1	0	0	0	0	0	0	0	1	13407	581	21	2		2	RLTPR	16	67680181	Silent	SNP	C	TCGA-CZ-4865-01A-02D-1501-10		67680181	22674572	51	33205											
GAN	8139	hgsc.bcm.edu;ucsc.edu	37	16	81398605	81398605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	81398605	G	T	81398605	3	4	565	1	0	0	0	0	1	0	0	0	6239	933	33	4	1293	4	GAN	16	81398605	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	13718424	81398605	8956148	52	33206											
TP53	7157	hgsc.bcm.edu;ucsc.edu	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	G	C	rs28934573	bycluster;alternate_allele	TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	7577559	G	C	7577559	3	2	565	1	0	0	0	0	1	0	0	0	16393	1174	41	4	568	4	TP53	17	7577559	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10		7577559	73617651	53	33207											
PIK3R6	146850	hgsc.bcm.edu;ucsc.edu	37	17	8730539	8730539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	8730539	G	T	8730539	3	4	565	1	0	0	0	0	1	0	0	0	11930	1357	47	4	830	4	PIK3R6	17	8730539	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	1152980	8730539	72464671	54	33208											
MYH2	4620	hgsc.bcm.edu;ucsc.edu	37	17	10435069	10435069	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	10435069	C	A	10435069	4	1	565	1	0	0	0	0	0	1	0	0	10042	864	30	4	3323	4	MYH2	17	10435069	Nonsense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	1704530	10435069	70760141	55	33209											
NT5M	56953	hgsc.bcm.edu;ucsc.edu	37	17	17248196	17248196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	17248196	T	C	17248196	3	2	565	1	0	0	0	0	1	0	0	0	10701	1551	54	3	532	3	NT5M	17	17248196	Missense_Mutation	SNP	T	TCGA-CZ-4865-01A-02D-1501-10	6813127	17248196	63947014	56	33210											
TMEM106A	113277	hgsc.bcm.edu	37	17	41368531	41368531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	41368531	G	A	41368531	3	1	565	1	0	0	0	0	1	0	0	0	16032	1261	44	2	507	2	TMEM106A	17	41368531	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	24120335	41368531	39826679	57	33211											
ABCC3	8714	hgsc.bcm.edu;ucsc.edu	37	17	48741447	48741447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	48741447	T	G	48741447	3	3	565	1	0	0	0	0	1	0	0	0	54	1435	50	5	1351	5	ABCC3	17	48741447	Missense_Mutation	SNP	T	TCGA-CZ-4865-01A-02D-1501-10	7372916	48741447	32453763	58	33212											
EIF4A3	9775	hgsc.bcm.edu;ucsc.edu	37	17	78110034	78110034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	78110034	T	C	78110034	3	2	565	1	0	0	0	0	1	0	0	0	5028	1464	51	3	163	3	EIF4A3	17	78110034	Missense_Mutation	SNP	T	TCGA-CZ-4865-01A-02D-1501-10	29368587	78110034	3085176	59	33213											
NDC80	10403	hgsc.bcm.edu;ucsc.edu	37	18	2608738	2608738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	2608738	G	C	2608738	3	2	565	1	0	0	0	0	1	0	0	0	10249	1291	45	4	1651	4	NDC80	18	2608738	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10		2608738	75468510	60	33214											
EPB41L3	23136	hgsc.bcm.edu;ucsc.edu	37	18	5428360	5428360	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	5428360	C	T	5428360	2	4	565	1	0	0	0	0	0	0	0	1	5156	912	32	2		2	EPB41L3	18	5428360	Silent	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	2819622	5428360	72648888	61	33215											
OR7G3	390883	hgsc.bcm.edu;ucsc.edu	37	19	9236856	9236856	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	9236856	C	T	9236856	2	4	565	1	0	0	0	0	0	0	0	1	11231	610	22	2		2	OR7G3	19	9236856	Silent	SNP	C	TCGA-CZ-4865-01A-02D-1501-10		9236856	49892127	62	33216											
GRIK5	2901	hgsc.bcm.edu;ucsc.edu	37	19	42566909	42566909	+	Splice_Site	SNP	C	C	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	42566909	C	A	42566909	5	1	565	1	0	0	0	0	0	0	1	0	6784	521	18	4	2667	4	GRIK5	19	42566909	Splice_Site	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	33330053	42566909	16562074	63	33217											
NAA20	51126	hgsc.bcm.edu;ucsc.edu	37	20	20006327	20006327	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	20006327	A	C	20006327	3	2	565	1	0	0	0	0	1	0	0	0	10127	333	12	5	116	5	NAA20	20	20006327	Missense_Mutation	SNP	A	TCGA-CZ-4865-01A-02D-1501-10		20006327	43019193	64	33218											
CEP250	11190	hgsc.bcm.edu;ucsc.edu	37	20	34053567	34053567	+	Splice_Site	SNP	G	G	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	34053567	G	C	34053567	5	2	565	1	0	0	0	0	0	0	1	0	3254	1014	35	4	253	4	CEP250	20	34053567	Splice_Site	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	14047240	34053567	28971953	65	33219											
LSM14B	149986	hgsc.bcm.edu;ucsc.edu	37	20	60708449	60708449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	60708449	G	A	60708449	3	1	565	1	0	0	0	0	1	0	0	0	9062	1001	35	2	1120	2	LSM14B	20	60708449	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	26654882	60708449	2317071	66	33220											
USP25	29761	hgsc.bcm.edu;ucsc.edu	37	21	17246743	17246743	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	T	17246743	C	T	17246743	2	4	565	1	0	0	0	0	0	0	0	1	17068	854	30	2		2	USP25	21	17246743	Silent	SNP	C	TCGA-CZ-4865-01A-02D-1501-10		17246743	30883152	67	33221											
GGT1	2678	hgsc.bcm.edu	37	22	25007113	25007113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	C	25007113	T	C	25007113	3	2	565	1	0	0	0	0	1	0	0	0	6368	1551	54	3	67	3	GGT1	22	25007113	Missense_Mutation	SNP	T	TCGA-CZ-4865-01A-02D-1501-10		25007113	26297453	68	33222											
REPS2	9185	hgsc.bcm.edu;ucsc.edu	37	X	17092279	17092279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	17092279	C	G	17092279	3	3	565	1	0	0	0	0	1	0	0	0	13242	855	30	4	1422	4	REPS2	23	17092279	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10		17092279	138178281	69	33223											
FAM47A	158724	hgsc.bcm.edu	37	X	34149658	34149693	+	In_Frame_Del	DEL	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	-	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	-	34149693	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	-	34149658	7	5	565	1	0	1	0	1	0	0	0	0	5576	446	16	0	1641	0	FAM47A	23	34149658	In_Frame_Del	DEL	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	TCGA-CZ-4865-01A-02D-1501-10	17057379	34149658	121120902	70	33224											
CXorf36	79742	hgsc.bcm.edu;ucsc.edu	37	X	45016973	45016973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	A	45016973	G	A	45016973	3	1	565	1	0	0	0	0	1	0	0	0	4108	1232	43	2	654	2	CXorf36	23	45016973	Missense_Mutation	SNP	G	TCGA-CZ-4865-01A-02D-1501-10	10867315	45016973	110253587	71	33225											
NAP1L2	4674	hgsc.bcm.edu;ucsc.edu	37	X	72432980	72432980	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	72432980	T	G	72432980	3	3	565	1	0	0	0	0	1	0	0	0	10164	1725	60	5	37	5	NAP1L2	23	72432980	Missense_Mutation	SNP	T	TCGA-CZ-4865-01A-02D-1501-10	27416007	72432980	82837580	72	33226											
RLIM	51132	hgsc.bcm.edu;ucsc.edu	37	X	73812508	73812508	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4865-01A-02D-1501-10	TCGA-CZ-4865-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f8eac30d-1155-44cc-a2ad-95427fecf4bf	e97e6356-82e8-49d3-ad59-f621e0cf6a85	G	73812508	C	G	73812508	3	3	565	1	0	0	0	0	1	0	0	0	13403	854	30	4	1236	4	RLIM	23	73812508	Missense_Mutation	SNP	C	TCGA-CZ-4865-01A-02D-1501-10	1379528	73812508	81458052	73	33227											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11189845	11189845	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	11189845	G	C	11189845	3	2	566	1	0	0	0	0	1	0	0	0	9961	933	33	4	2061	4	MTOR	1	11189845	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10		11189845	238060776	1	33228											
KIAA1522	57648	broad.mit.edu	37	1	33236584	33236584	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	33236584	T	T	33236584	3	4	566	1	0	0	0	0	1	0	0	0	8245	623	22	2	1826	2	KIAA1522	1	33236584	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	22046739	33236584	216014037	2	33229											
RPE65	6121	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	68903915	68903915	+	Silent	SNP	G	G	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	68903915	G	C	68903915	2	2	566	1	0	0	0	0	0	0	0	1	13558	1219	43	4		4	RPE65	1	68903915	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	35667331	68903915	180346706	3	33230											
LRRIQ3	127255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	74540469	74540469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	74540469	T	C	74540469	3	2	566	1	0	0	0	0	1	0	0	0	9037	1396	49	3	1013	3	LRRIQ3	1	74540469	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	5636554	74540469	174710152	4	33231											
COL24A1	255631	broad.mit.edu;ucsc.edu	37	1	86252141	86252141	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	86252141	A	A	86252141	3	1	566	1	0	0	0	0	1	0	0	0	3685	1464	51	5	1241	5	COL24A1	1	86252141	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	11711672	86252141	162998480	5	33232											
TXNIP	10628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	145440274	145440274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	145440274	G	A	145440274	3	1	566	1	0	0	0	0	1	0	0	0	16815	1291	45	2	598	2	TXNIP	1	145440274	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	59188133	145440274	103810347	6	33233											
XPR1	9213	broad.mit.edu;ucsc.edu	37	1	180794054	180794054	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	180794054	G	G	180794054	3	3	566	1	0	0	0	0	1	0	0	0	17463	101	4	3	959	3	XPR1	1	180794054	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	35353780	180794054	68456567	7	33234											
XPR1	9213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	180849261	180849261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	180849261	T	C	180849261	3	2	566	1	0	0	0	0	1	0	0	0	17463	1580	55	3	1912	3	XPR1	1	180849261	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	55207	180849261	68401360	8	33235											
PCNXL2	80003	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	233270864	233270864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	233270864	C	G	233270864	3	3	566	1	0	0	0	0	1	0	0	0	11599	564	20	4	2737	4	PCNXL2	1	233270864	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	52421603	233270864	15979757	9	33236											
OR2L2	26246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	248202228	248202228	+	Missense_Mutation	SNP	T	T	C	rs138507569	by1000genomes	TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	248202228	T	C	248202228	3	2	566	1	0	0	0	0	1	0	0	0	11014	1725	60	3	661	3	OR2L2	1	248202228	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	14931364	248202228	1048393	10	33237											
CTNNA2	1496	broad.mit.edu	37	2	80136761	80136761	+	Silent	SNP	G	A	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	80136761	A	A	80136761	2	1	566	1	0	0	0	0	0	0	0	1	4015	1252	44	2		2	CTNNA2	2	80136761	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10		80136761	163062612	11	33238											
CXCR4	7852	broad.mit.edu;ucsc.edu	37	2	136872770	136872770	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	136872770	G	G	136872770	3	3	566	1	0	0	0	0	1	0	0	0	4095	333	12	3	334	3	CXCR4	2	136872770	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	56736009	136872770	106326603	12	33239											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179401957	179401957	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	179401957	T	G	179401957	3	3	566	1	0	0	0	0	1	0	0	0	16747	1722	60	5	8128	5	TTN	2	179401957	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	42529187	179401957	63797416	13	33240											
SLC4A3	6508	broad.mit.edu;ucsc.edu	37	2	220502504	220502504	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	220502504	C	C	220502504	3	2	566	1	0	0	0	0	1	0	0	0	14668	1725	60	3	2880	3	SLC4A3	2	220502504	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	41100547	220502504	22696869	14	33241											
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52441418	52441418	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	52441418	G	C	52441418	3	2	566	1	0	0	0	0	1	0	0	0	1311	1203	42	4	1803	4	BAP1	3	52441418	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10		52441418	145581012	15	33242											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52443568	52443568	+	Splice_Site	SNP	A	A	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	52443568	A	T	52443568	5	4	566	1	0	0	0	0	0	0	1	0	1311	173	6	5	2125	5	BAP1	3	52443568	Splice_Site	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	2150	52443568	145578862	16	33243											
MUC4	4585	broad.mit.edu	37	3	195513812	195513812	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	195513812	A	A	195513812	3	1	566	1	0	0	0	0	1	0	0	0	9985	1696	59	5		5	MUC4	3	195513812	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	143070244	195513812	2508618	17	33244											
CPZ	8532	hgsc.bcm.edu;ucsc.edu	37	4	8613867	8613867	+	Silent	SNP	G	G	A	rs2302573	bycluster;byfrequency;by1000genomes	TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	8613867	G	A	8613867	2	1	566	1	0	0	0	0	0	0	0	1	3841	1103	39	1		1	CPZ	4	8613867	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10		8613867	182540409	18	33245											
WDFY3	23001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	85722980	85722980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	85722980	A	G	85722980	3	3	566	1	0	0	0	0	1	0	0	0	17282	372	13	3	8143	3	WDFY3	4	85722980	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	77109113	85722980	105431296	19	33246											
PTPN13	5783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87662898	87662898	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	87662898	G	C	87662898	3	2	566	1	0	0	0	0	1	0	0	0	12793	1291	45	4	2474	4	PTPN13	4	87662898	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	1939918	87662898	103491378	20	33247											
C4orf17	84103	hgsc.bcm.edu	37	4	100443802	100443802	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	100443802	G	A	100443802	2	1	566	1	0	0	0	0	0	0	0	1	2254	933	33	2		2	C4orf17	4	100443802	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	12780904	100443802	90710474	21	33248											
LEF1	51176	hgsc.bcm.edu	37	4	109084820	109084820	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	109084820	G	A	109084820	2	1	566	1	0	0	0	0	0	0	0	1	8721	987	35	2		2	LEF1	4	109084820	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	8641018	109084820	82069456	22	33249											
HSPA4L	22824	broad.mit.edu;ucsc.edu	37	4	128732596	128732596	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	128732596	A	A	128732596	3	1	566	1	0	0	0	0	1	0	0	0	7420	796	28	4	1429	4	HSPA4L	4	128732596	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	19647776	128732596	62421680	23	33250											
EGFLAM	133584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	38427225	38427225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	38427225	G	A	38427225	3	1	566	1	0	0	0	0	1	0	0	0	4968	1116	39	1	1993	1	EGFLAM	5	38427225	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10		38427225	142488035	24	33251											
SLCO4C1	353189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	101597678	101597678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	101597678	A	G	101597678	3	3	566	1	0	0	0	0	1	0	0	0	14743	420	15	3	1251	3	SLCO4C1	5	101597678	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	63170453	101597678	79317582	25	33252											
SLIT3	6586	hgsc.bcm.edu	37	5	168096839	168096839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	168096839	C	T	168096839	3	4	566	1	0	0	0	0	1	0	0	0	14754	864	30	2	294	2	SLIT3	5	168096839	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	66499161	168096839	12818421	26	33253											
DPCR1	135656	hgsc.bcm.edu	37	6	30918543	30918545	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	-	30918545	TTG	-	30918543	7	5	566	1	0	1	0	1	0	0	0	0	4714	1490	52	0	2308	0	DPCR1	6	30918543	In_Frame_Del	DEL	TTG	TCGA-CZ-4866-01A-01D-1501-10		30918543	140196524	27	33254											
LY6G6F	259215	broad.mit.edu;hgsc.bcm.edu	37	6	31675443	31675444	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	31675444	-	A	31675443	7	5	566	1	0	1	1	0	0	0	0	0	9103	1161	41	0	267	0	LY6G6F	6	31675443	Frame_Shift_Ins	INS	-	TCGA-CZ-4866-01A-01D-1501-10	756900	31675443	139439624	28	33255											
TMEM63B	55362	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	44107238	44107238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	44107238	G	A	44107238	3	1	566	1	0	0	0	0	1	0	0	0	16203	1319	46	2	464	2	TMEM63B	6	44107238	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	12431795	44107238	127007829	29	33256											
TDRD6	221400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46661744	46661744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	46661744	A	T	46661744	3	4	566	1	0	0	0	0	1	0	0	0	15746	217	8	5	5881	5	TDRD6	6	46661744	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	2554506	46661744	124453323	30	33257											
SYNJ2	8871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	158517224	158517224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	158517224	G	A	158517224	3	1	566	1	0	0	0	0	1	0	0	0	15465	1174	41	2	4425	2	SYNJ2	6	158517224	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	111855480	158517224	12597843	31	33258											
AQP1	358	broad.mit.edu	37	7	30963232	30963232	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	30963232	A	A	30963232	3	1	566	1	0	0	0	0	1	0	0	0	821	1290	45	2	1069	2	AQP1	7	30963232	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10		30963232	128175431	32	33259											
OGDH	4967	hgsc.bcm.edu;ucsc.edu	37	7	44713430	44713434	+	Frame_Shift_Del	DEL	TGACC	TGACC	-	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	TGACC	TGACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	-	44713434	TGACC	-	44713430	7	5	566	1	0	1	0	1	0	0	0	0	10846	1461	51	0	791	0	OGDH	7	44713430	Frame_Shift_Del	DEL	TGACC	TCGA-CZ-4866-01A-01D-1501-10	13750198	44713430	114425233	33	33260											
TNS3	64759	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	47384598	47384598	+	Silent	SNP	G	G	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	47384598	G	T	47384598	2	4	566	1	0	0	0	0	0	0	0	1	16356	1048	37	4		4	TNS3	7	47384598	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	2671168	47384598	111754065	34	33261											
ABCA13	154664	hgsc.bcm.edu	37	7	48563848	48563848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	48563848	C	T	48563848	3	4	566	1	0	0	0	0	1	0	0	0	31	826	29	2	14099	2	ABCA13	7	48563848	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	1179250	48563848	110574815	35	33262											
ABCB1	5243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	87196210	87196210	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	87196210	C	A	87196210	4	1	566	1	0	0	0	0	0	1	0	0	40	603	21	4	3513	4	ABCB1	7	87196210	Nonsense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	38632362	87196210	71942453	36	33263											
AKAP9	10142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	91631974	91631974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	91631974	T	A	91631974	3	1	566	1	0	0	0	0	1	0	0	0	459	1783	62	5	2773	5	AKAP9	7	91631974	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	4435764	91631974	67506689	37	33264											
CCDC132	55610	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92970752	92970752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	92970752	A	G	92970752	3	3	566	1	0	0	0	0	1	0	0	0	2769	333	12	3	2204	3	CCDC132	7	92970752	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	1338778	92970752	66167911	38	33265											
GIGYF1	64599	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	100281055	100281055	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	100281055	T	A	100281055	4	1	566	1	0	0	0	0	0	1	0	0	6384	1588	55	5	1070	5	GIGYF1	7	100281055	Nonsense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	7310303	100281055	58857608	39	33266											
PNPLA8	50640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	108155935	108155935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	108155935	T	C	108155935	3	2	566	1	0	0	0	0	1	0	0	0	12178	1406	49	3	2383	3	PNPLA8	7	108155935	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	7874880	108155935	50982728	40	33267											
ZNF800	168850	broad.mit.edu;hgsc.bcm.edu	37	7	127013601	127013601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	127013601	T	C	127013601	3	2	566	1	0	0	0	0	1	0	0	0	18181	1522	53	3	213	3	ZNF800	7	127013601	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	18857666	127013601	32125062	41	33268											
EPHA1	2041	broad.mit.edu;hgsc.bcm.edu	37	7	143097036	143097036	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	143097036	G	A	143097036	2	1	566	1	0	0	0	0	0	0	0	1	5167	929	33	2		2	EPHA1	7	143097036	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	16083435	143097036	16041627	42	33269											
GATA4	2626	broad.mit.edu;ucsc.edu	37	8	11615820	11615820	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	11615820	C	C	11615820	3	2	566	1	0	0	0	0	1	0	0	0	6263	333	12	5	1187	5	GATA4	8	11615820	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10		11615820	134748202	43	33270											
PENK	5179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	57354188	57354188	+	Silent	SNP	C	C	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	57354188	C	T	57354188	2	4	566	1	0	0	0	0	0	0	0	1	11734	755	27	1		1	PENK	8	57354188	Silent	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	45738368	57354188	89009834	44	33271											
FRMPD1	22844	broad.mit.edu	37	9	37746529	37746529	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	-	37746529	-	-	37746529	7	5	566	1	0	1	0	1	0	0	0	0	6064	1335	47	0	4558	0	FRMPD1	9	37746529	Frame_Shift_Del	DEL	G	TCGA-CZ-4866-01A-01D-1501-10		37746529	103466902	45	33272											
KLF9	687	broad.mit.edu	37	9	73027890	73027890	+	Silent	SNP	T	C	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	73027890	C	C	73027890	2	2	566	1	0	0	0	0	0	0	0	1	8360	1538	54	3		3	KLF9	9	73027890	Silent	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	35281361	73027890	68185541	46	33273											
GOT1	2805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	101165548	101165549	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	-	101165549	GA	-	101165548	7	5	566	1	0	1	0	1	0	0	0	0	6586	1174	41	0	654	0	GOT1	10	101165548	Frame_Shift_Del	DEL	GA	TCGA-CZ-4866-01A-01D-1501-10		101165548	34369199	47	33274											
OR52J3	119679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5068157	5068157	+	Silent	SNP	C	C	T	rs149427006		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	5068157	C	T	5068157	2	4	566	1	0	0	0	0	0	0	0	1	11129	547	19	1		1	OR52J3	11	5068157	Silent	SNP	C	TCGA-CZ-4866-01A-01D-1501-10		5068157	129938359	48	33275											
SLC39A13	91252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47433931	47433931	+	Silent	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	47433931	G	A	47433931	2	1	566	1	0	0	0	0	0	0	0	1	14629	962	34	2		2	SLC39A13	11	47433931	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	42365774	47433931	87572585	49	33276											
MS4A2	2206	hgsc.bcm.edu;ucsc.edu	37	11	59860282	59860283	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	59860283	-	T	59860282	7	5	566	1	0	1	1	0	0	0	0	0	9867	1377	48	0	353	0	MS4A2	11	59860282	Frame_Shift_Ins	INS	-	TCGA-CZ-4866-01A-01D-1501-10	12426351	59860282	75146234	50	33277											
SNX32	254122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65617711	65617711	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	65617711	G	C	65617711	3	2	566	1	0	0	0	0	1	0	0	0	14915	943	33	4	357	4	SNX32	11	65617711	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	5757429	65617711	69388805	51	33278											
ARHGEF17	9828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	73066671	73066671	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	-	73066671	C	-	73066671	7	5	566	1	0	1	0	1	0	0	0	0	900	739	26	0	3561	0	ARHGEF17	11	73066671	Frame_Shift_Del	DEL	C	TCGA-CZ-4866-01A-01D-1501-10	7448960	73066671	61939845	52	33279											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	103024178	103024178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	103024178	G	T	103024178	3	4	566	1	0	0	0	0	1	0	0	0	4848	1020	36	4	3329	4	DYNC2H1	11	103024178	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	29957507	103024178	31982338	53	33280											
USP2	9099	broad.mit.edu;ucsc.edu	37	11	119229962	119229962	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	119229962	A	A	119229962	3	1	566	1	0	0	0	0	1	0	0	0	17063	1319	46	2	813	2	USP2	11	119229962	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	16205784	119229962	15776554	54	33281											
OR8G2	26492	hgsc.bcm.edu	37	11	124096257	124096257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	124096257	C	T	124096257	3	4	566	1	0	0	0	0	1	0	0	0	11242	855	30	2	862	2	OR8G2	11	124096257	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	4866295	124096257	10910259	55	33282											
OR8B3	390271	broad.mit.edu;hgsc.bcm.edu	37	11	124266328	124266328	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	124266328	A	T	124266328	3	4	566	1	0	0	0	0	1	0	0	0	11235	101	4	5	23	5	OR8B3	11	124266328	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	170071	124266328	10740188	56	33283											
WBP11	51729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	14943401	14943401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	14943401	C	A	14943401	3	1	566	1	0	0	0	0	1	0	0	0	17270	507	18	4	639	4	WBP11	12	14943401	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10		14943401	118908494	57	33284											
ANKRD33	341405	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52282005	52282005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	52282005	C	T	52282005	3	4	566	1	0	0	0	0	1	0	0	0	661	855	30	2	37	2	ANKRD33	12	52282005	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	37338604	52282005	81569890	58	33285											
CCT2	10576	broad.mit.edu;ucsc.edu	37	12	69985846	69985846	+	Silent	SNP	G	T	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	69985846	T	T	69985846	2	4	566	1	0	0	0	0	0	0	0	1	2955	1364	48	4		4	CCT2	12	69985846	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	17703841	69985846	63866049	59	33286											
MGAT4C	25834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	86383258	86383258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	86383258	G	A	86383258	3	1	566	1	0	0	0	0	1	0	0	0	9554	1145	40	1	1381	1	MGAT4C	12	86383258	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	16397412	86383258	47468637	60	33287											
ACACB	32	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	109689927	109689927	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	109689927	A	T	109689927	3	4	566	1	0	0	0	0	1	0	0	0	107	159	6	5	6029	5	ACACB	12	109689927	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	23306669	109689927	24161968	61	33288											
PIWIL1	9271	broad.mit.edu;ucsc.edu	37	12	130845828	130845828	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	130845828	A	A	130845828	3	1	566	1	0	0	0	0	1	0	0	0	11964	507	18	4	1823	4	PIWIL1	12	130845828	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	21155901	130845828	3006067	62	33289											
LRFN5	145581	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	42360818	42360818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	42360818	C	T	42360818	3	4	566	1	0	0	0	0	1	0	0	0	8948	536	19	1	1757	1	LRFN5	14	42360818	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10		42360818	64988722	63	33290											
DIO3	1735	broad.mit.edu	37	14	102028537	102028537	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	102028537	T	T	102028537	3	4	566	1	0	0	0	0	1	0	0	0	4528	1261	44	4	706	4	DIO3	14	102028537	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	59667719	102028537	5321003	64	33291											
TGM5	9333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43531237	43531237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	43531237	G	A	43531237	3	1	566	1	0	0	0	0	1	0	0	0	15845	1232	43	2	1059	2	TGM5	15	43531237	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10		43531237	59000155	65	33292											
ATP8B4	79895	broad.mit.edu;ucsc.edu	37	15	50211075	50211075	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	50211075	A	A	50211075	3	1	566	1	0	0	0	0	1	0	0	0	1197	797	28	4	1622	4	ATP8B4	15	50211075	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	6679838	50211075	52320317	66	33293											
ERCC4	2072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	14041845	14041845	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	14041845	C	G	14041845	3	3	566	1	0	0	0	0	1	0	0	0	5217	564	20	4	2434	4	ERCC4	16	14041845	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10		14041845	76312908	67	33294											
FBRS	64319	broad.mit.edu;hgsc.bcm.edu	37	16	30679940	30679940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	30679940	G	A	30679940	3	1	566	1	0	0	0	0	1	0	0	0	5714	1349	47	2	608	2	FBRS	16	30679940	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	16638095	30679940	59674813	68	33295											
GLP2R	9340	hgsc.bcm.edu	37	17	9737136	9737136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	9737136	C	T	9737136	3	4	566	1	0	0	0	0	1	0	0	0	6460	681	24	2	208	2	GLP2R	17	9737136	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10		9737136	71458074	69	33296											
SMCR8	140775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18219207	18219207	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	18219207	T	A	18219207	3	1	566	1	0	0	0	0	1	0	0	0	14805	1783	62	5	106	5	SMCR8	17	18219207	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10	8482071	18219207	62976003	70	33297											
EME1	146956	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48456585	48456585	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	48456585	G	C	48456585	3	2	566	1	0	0	0	0	1	0	0	0	5090	1014	35	4	1287	4	EME1	17	48456585	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	30237378	48456585	32738625	71	33298											
PTPN2	5771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	12814354	12814354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	12814354	T	G	12814354	3	3	566	1	0	0	0	0	1	0	0	0	12796	1449	50	5	579	5	PTPN2	18	12814354	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10		12814354	65262894	72	33299											
MBD1	4152	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	47803544	47803544	+	Silent	SNP	A	A	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	47803544	A	C	47803544	2	2	566	1	0	0	0	0	0	0	0	1	9349	117	5	5		5	MBD1	18	47803544	Silent	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	34989190	47803544	30273704	73	33300											
ZNF607	84775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38190296	38190296	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	38190296	T	A	38190296	3	1	566	1	0	0	0	0	1	0	0	0	18045	1406	49	5	1358	5	ZNF607	19	38190296	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10		38190296	20938687	74	33301											
ATP5SL	55101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41942328	41942328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	G	41942328	A	G	41942328	3	3	566	1	0	0	0	0	1	0	0	0	1164	72	3	3	524	3	ATP5SL	19	41942328	Missense_Mutation	SNP	A	TCGA-CZ-4866-01A-01D-1501-10	3752032	41942328	17186655	75	33302											
ZNF284	342909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44586259	44586259	+	Splice_Site	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	44586259	G	A	44586259	5	1	566	1	0	0	0	0	0	0	1	0	17833	1275	44	2	246	2	ZNF284	19	44586259	Splice_Site	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	2643931	44586259	14542724	76	33303											
GPR77	27202	broad.mit.edu	37	19	47844249	47844249	+	Missense_Mutation	SNP	C	T	T	rs144687097		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	47844249	T	T	47844249	3	4	566	1	0	0	0	0	1	0	0	0	6716	652	23	1	195	1	GPR77	19	47844249	Missense_Mutation	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	3257990	47844249	11284734	77	33304											
ZNF468	90333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53345371	53345371	+	Missense_Mutation	SNP	G	G	A	rs148965254	bycluster;byfrequency;by1000genomes	TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	53345371	G	A	53345371	3	1	566	1	0	0	0	0	1	0	0	0	17940	1059	37	1	1396	1	ZNF468	19	53345371	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	5501122	53345371	5783612	78	33305											
LILRB3	11025	broad.mit.edu;hgsc.bcm.edu	37	19	54721109	54721109	+	Splice_Site	SNP	C	C	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	54721109	C	A	54721109	5	1	566	1	0	0	0	0	0	0	1	0	8799	695	24	4	150	4	LILRB3	19	54721109	Splice_Site	SNP	C	TCGA-CZ-4866-01A-01D-1501-10	1375738	54721109	4407874	79	33306											
LAIR2	3904	broad.mit.edu;ucsc.edu	37	19	55019389	55019389	+	Silent	SNP	G	T	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	55019389	T	T	55019389	2	4	566	1	0	0	0	0	0	0	0	1	8610	1306	46	4		4	LAIR2	19	55019389	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	298280	55019389	4109594	80	33307											
ATP9A	10079	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	50292728	50292728	+	Silent	SNP	A	A	T	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	T	50292728	A	T	50292728	2	4	566	1	0	0	0	0	0	0	0	1	1198	233	9	5		5	ATP9A	20	50292728	Silent	SNP	A	TCGA-CZ-4866-01A-01D-1501-10		50292728	12732792	81	33308											
PHACTR3	116154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	58318178	58318178	+	Silent	SNP	G	G	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	58318178	G	C	58318178	2	2	566	1	0	0	0	0	0	0	0	1	11818	1074	38	4		4	PHACTR3	20	58318178	Silent	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	8025450	58318178	4707342	82	33309											
BAGE3	85318	broad.mit.edu;hgsc.bcm.edu	37	21	11049593	11049593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	11049593	G	A	11049593	3	1	566	1	0	0	0	0	1	0	0	0	1293	1087	38	1	25	1	BAGE3	21	11049593	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10		11049593	37080302	83	33310											
SETD4	54093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37418187	37418187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	A	37418187	G	A	37418187	3	1	566	1	0	0	0	0	1	0	0	0	14146	1000	35	2	950	2	SETD4	21	37418187	Missense_Mutation	SNP	G	TCGA-CZ-4866-01A-01D-1501-10	26368594	37418187	10711708	84	33311											
FOXRED2	80020	broad.mit.edu;ucsc.edu	37	22	36894120	36894120	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-4866-01A-01D-1501-10	TCGA-CZ-4866-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a3a06421-7838-4ac2-b5d5-45d2ea651368	f3812874-ff21-40d4-b7b7-5e13b2455d07	C	36894120	C	C	36894120	3	2	566	1	0	0	0	0	1	0	0	0	6041	1580	55	3	770	3	FOXRED2	22	36894120	Missense_Mutation	SNP	T	TCGA-CZ-4866-01A-01D-1501-10		36894120	14410446	85	33312											
KIF1B	23095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10394639	10394639	+	Missense_Mutation	SNP	G	G	A	rs145596547		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	10394639	G	A	10394639	3	1	567	1	0	0	0	0	1	0	0	0	8291	1145	40	1	4435	1	KIF1B	1	10394639	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10		10394639	238855982	1	33313											
SPOCD1	90853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	32259422	32259422	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	32259422	G	T	32259422	2	4	567	1	0	0	0	0	0	0	0	1	15090	1219	43	4		4	SPOCD1	1	32259422	Silent	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	21864783	32259422	216991199	2	33314											
CSF3R	1441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36931800	36931800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	36931800	G	A	36931800	3	1	567	1	0	0	0	0	1	0	0	0	3939	985	34	2	106	2	CSF3R	1	36931800	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	4672378	36931800	212318821	3	33315											
SF3A3	10946	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	38455225	38455225	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	38455225	G	A	38455225	4	1	567	1	0	0	0	0	0	1	0	0	14161	1328	46	2	1430	2	SF3A3	1	38455225	Nonsense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	1523425	38455225	210795396	4	33316	426	2									
SF3A3	10946	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	38455226	38455226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	38455226	C	T	38455226	3	4	567	1	0	0	0	0	1	0	0	0	14161	710	25	2	1431	2	SF3A3	1	38455226	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	1	38455226	210795395	5	33317	426	2									
CDKN2C	1031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	51436156	51436156	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	51436156	G	C	51436156	3	2	567	1	0	0	0	0	1	0	0	0	3167	1000	35	4	118	4	CDKN2C	1	51436156	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	12980930	51436156	197814465	6	33318											
EPS15	2060	hgsc.bcm.edu	37	1	51869130	51869130	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	-	51869130	T	-	51869130	7	5	567	1	0	1	0	1	0	0	0	0	5194	1606	56	0	974	0	EPS15	1	51869130	Frame_Shift_Del	DEL	T	TCGA-CZ-5451-01A-01D-1501-10	432974	51869130	197381491	7	33319											
FAM151A	338094	broad.mit.edu;ucsc.edu	37	1	55077410	55077410	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	55077410	C	C	55077410	3	2	567	1	0	0	0	0	1	0	0	0	5462	188	7	5	960	5	FAM151A	1	55077410	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	3208280	55077410	194173211	8	33320											
USP24	23358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55619805	55619805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	55619805	T	G	55619805	3	3	567	1	0	0	0	0	1	0	0	0	17067	1783	62	5	6279	5	USP24	1	55619805	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	542395	55619805	193630816	9	33321											
PDE4B	5142	broad.mit.edu	37	1	66827366	66827366	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	66827366	A	A	66827366	3	1	567	1	0	0	0	0	1	0	0	0	11647	797	28	4	1302	4	PDE4B	1	66827366	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	11207561	66827366	182423255	10	33322											
ADAR	103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154574687	154574687	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	154574687	A	T	154574687	4	4	567	1	0	0	0	0	0	1	0	0	281	372	13	5	3305	5	ADAR	1	154574687	Nonsense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	87747321	154574687	94675934	11	33323											
PTPRC	5788	broad.mit.edu;hgsc.bcm.edu	37	1	198687258	198687258	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	198687258	A	T	198687258	3	4	567	1	0	0	0	0	1	0	0	0	12810	275	10	5	1541	5	PTPRC	1	198687258	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	44112571	198687258	50563363	12	33324											
RAB3GAP2	25782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	220346067	220346067	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	220346067	A	G	220346067	2	3	567	1	0	0	0	0	0	0	0	1	12949	1	1	3		3	RAB3GAP2	1	220346067	Silent	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	21658809	220346067	28904554	13	33325											
GCKR	2646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27719812	27719812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	27719812	C	T	27719812	3	4	567	1	0	0	0	0	1	0	0	0	6301	652	23	1	43	1	GCKR	2	27719812	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10		27719812	215479561	14	33326											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32693677	32693677	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	32693677	A	T	32693677	3	4	567	1	0	0	0	0	1	0	0	0	1438	14	1	5	6067	5	BIRC6	2	32693677	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	4973865	32693677	210505696	15	33327											
CYP26B1	56603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	72362015	72362015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	72362015	C	T	72362015	3	4	567	1	0	0	0	0	1	0	0	0	4158	623	22	2	814	2	CYP26B1	2	72362015	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	39668338	72362015	170837358	16	33328											
MGAT4A	11320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	99256416	99256416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	99256416	G	A	99256416	3	1	567	1	0	0	0	0	1	0	0	0	9552	1261	44	2	529	2	MGAT4A	2	99256416	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	26894401	99256416	143942957	17	33329											
KIF5C	3800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	149851037	149851037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	149851037	A	G	149851037	3	3	567	1	0	0	0	0	1	0	0	0	8314	15	1	3	1996	3	KIF5C	2	149851037	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	50594621	149851037	93348336	18	33330											
DCAF17	80067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	172291646	172291646	+	Silent	SNP	C	C	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	172291646	C	G	172291646	2	3	567	1	0	0	0	0	0	0	0	1	4271	668	24	4		4	DCAF17	2	172291646	Silent	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	22440609	172291646	70907727	19	33331											
DNAJC10	54431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	183616891	183616891	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	183616891	A	G	183616891	2	3	567	1	0	0	0	0	0	0	0	1	4631	175	7	3		3	DNAJC10	2	183616891	Silent	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	11325245	183616891	59582482	20	33332											
SRGAP3	9901	broad.mit.edu	37	3	9068661	9068661	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	9068661	A	A	9068661	3	1	567	1	0	0	0	0	1	0	0	0	15159	1261	44	2	1781	2	SRGAP3	3	9068661	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10		9068661	188953769	21	33333											
SCAP	22937	broad.mit.edu	37	3	47461081	47461099	+	Frame_Shift_Del	DEL	AGCCAGGGCTCCCTCACCC	-	-	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	AGCCAGGGCTCCCTCACCC	AGCCAGGGCTCCCTCACCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	-	47461099	-	-	47461081	7	5	567	1	0	1	0	1	0	0	0	0	13890	291	11	0	2206	0	SCAP	3	47461081	Frame_Shift_Del	DEL	AGCCAGGGCTCCCTCACCC	TCGA-CZ-5451-01A-01D-1501-10	38392420	47461081	150561349	22	33334											
DHX30	22907	broad.mit.edu;ucsc.edu	37	3	47887677	47887677	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	47887677	G	G	47887677	3	3	567	1	0	0	0	0	1	0	0	0	4506	1435	50	5	1160	5	DHX30	3	47887677	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	426596	47887677	150134753	23	33335											
CADPS	8618	broad.mit.edu;ucsc.edu	37	3	62388785	62388785	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	62388785	A	A	62388785	4	1	567	1	0	0	0	0	0	1	0	0	2572	1299	45	2	216	2	CADPS	3	62388785	Nonsense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	14501108	62388785	135633645	24	33336	427	2									
CADPS	8618	broad.mit.edu;ucsc.edu	37	3	62388786	62388786	+	Silent	SNP	A	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	62388786	G	G	62388786	2	3	567	1	0	0	0	0	0	0	0	1	2572	340	12	3		3	CADPS	3	62388786	Silent	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	1	62388786	135633644	25	33337	427	2									
AGTR1	185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	148459496	148459496	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	148459496	C	G	148459496	3	3	567	1	0	0	0	0	1	0	0	0	401	797	28	4	676	4	AGTR1	3	148459496	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	86070710	148459496	49562934	26	33338											
CHRNA9	55584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	40337469	40337469	+	Splice_Site	SNP	G	G	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	40337469	G	C	40337469	5	2	567	1	0	0	0	0	0	0	1	0	3391	956	33	4		4	CHRNA9	4	40337469	Splice_Site	SNP	G	TCGA-CZ-5451-01A-01D-1501-10		40337469	150816807	27	33339											
SCARB2	950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77100845	77100845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	77100845	C	A	77100845	3	1	567	1	0	0	0	0	1	0	0	0	13895	595	21	4	1035	4	SCARB2	4	77100845	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	36763376	77100845	114053431	28	33340											
RASGEF1C	255426	broad.mit.edu;ucsc.edu	37	5	179546418	179546418	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	179546418	G	G	179546418	3	3	567	1	0	0	0	0	1	0	0	0	13084	1435	50	5	593	5	RASGEF1C	5	179546418	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10		179546418	1368842	29	33341											
ZNF187	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	28244851	28244851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	28244851	A	C	28244851	3	2	567	1	0	0	0	0	1	0	0	0	17765	159	6	5	1427	5	ZNF187	6	28244851	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10		28244851	142870216	30	33342											
PDSS2	57107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	107655484	107655484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	107655484	G	A	107655484	3	1	567	1	0	0	0	0	1	0	0	0	11701	971	34	2	878	2	PDSS2	6	107655484	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	79410633	107655484	63459583	31	33343											
LAMA4	3910	broad.mit.edu;ucsc.edu	37	6	112441542	112441542	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	112441542	T	T	112441542	3	4	567	1	0	0	0	0	1	0	0	0	8615	1290	45	4	890	4	LAMA4	6	112441542	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	4786058	112441542	58673525	32	33344	428	2									
LAMA4	3910	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	112441543	112441543	+	Silent	SNP	A	A	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	112441543	A	T	112441543	2	4	567	1	0	0	0	0	0	0	0	1	8615	262	10	5		5	LAMA4	6	112441543	Silent	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	1	112441543	58673524	33	33345	428	2									
CENPW	387103	broad.mit.edu;ucsc.edu	37	6	126669610	126669610	+	Splice_Site	SNP	A	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	126669610	G	G	126669610	5	3	567	1	0	0	0	0	0	0	1	0	3246	202	7	3	249	3	CENPW	6	126669610	Splice_Site	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	14228067	126669610	44445457	34	33346											
THSD7A	221981	broad.mit.edu;ucsc.edu	37	7	11446611	11446611	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	11446611	G	G	11446611	3	3	567	1	0	0	0	0	1	0	0	0	15891	855	30	4	1017	4	THSD7A	7	11446611	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10		11446611	147692052	35	33347											
SH2B2	10603	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	101952119	101952119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	101952119	T	G	101952119	3	3	567	1	0	0	0	0	1	0	0	0	14241	1435	50	5	997	5	SH2B2	7	101952119	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	90505508	101952119	57186544	36	33348											
DOCK4	9732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	111379463	111379463	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	111379463	G	T	111379463	4	4	567	1	0	0	0	0	0	1	0	0	4691	1059	37	4	840	4	DOCK4	7	111379463	Nonsense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	9427344	111379463	47759200	37	33349											
GCC1	79571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127224747	127224747	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	127224747	G	A	127224747	4	1	567	1	0	0	0	0	0	1	0	0	6292	1299	45	2	1845	2	GCC1	7	127224747	Nonsense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	15845284	127224747	31913916	38	33350											
MRPS33	51650	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	140710230	140710230	+	Silent	SNP	A	A	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	140710230	A	C	140710230	2	2	567	1	0	0	0	0	0	0	0	1	9849	117	5	5		5	MRPS33	7	140710230	Silent	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	13485483	140710230	18428433	39	33351											
PREX2	80243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	69009342	69009342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	69009342	G	C	69009342	3	2	567	1	0	0	0	0	1	0	0	0	12487	1261	44	4	2545	4	PREX2	8	69009342	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10		69009342	77354680	40	33352											
RNF139	11236	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125498660	125498660	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	125498660	T	G	125498660	4	3	567	1	0	0	0	0	0	1	0	0	13455	1764	61	5	776	5	RNF139	8	125498660	Nonsense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	56489318	125498660	20865362	41	33353											
KIAA1797	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	20990252	20990253	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	20990253	-	G	20990252	7	5	567	1	0	1	1	0	0	0	0	0	8265	1638	57	0	5297	0	KIAA1797	9	20990252	Frame_Shift_Ins	INS	-	TCGA-CZ-5451-01A-01D-1501-10		20990252	120223179	42	33354											
LRRC8A	56262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	131669449	131669449	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	131669449	T	A	131669449	2	1	567	1	0	0	0	0	0	0	0	1	9028	1771	62	5		5	LRRC8A	9	131669449	Silent	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	110679197	131669449	9543982	43	33355											
KCNMA1	3778	broad.mit.edu	37	10	78709126	78709126	+	Splice_Site	SNP	T	C	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	78709126	C	C	78709126	5	2	567	1	0	0	0	0	0	0	1	0	8080	1536	53	3	1284	3	KCNMA1	10	78709126	Splice_Site	SNP	T	TCGA-CZ-5451-01A-01D-1501-10		78709126	56825621	44	33356											
FAM35A	54537	broad.mit.edu;hgsc.bcm.edu	37	10	88930275	88930275	+	Silent	SNP	G	G	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	88930275	G	C	88930275	2	2	567	1	0	0	0	0	0	0	0	1	5560	1335	47	4		4	FAM35A	10	88930275	Silent	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	10221149	88930275	46604472	45	33357											
NHLRC2	374354	hgsc.bcm.edu;ucsc.edu	37	10	115636591	115636591	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	-	115636591	A	-	115636591	7	5	567	1	0	1	0	1	0	0	0	0	10413	363	13	0	653	0	NHLRC2	10	115636591	Frame_Shift_Del	DEL	A	TCGA-CZ-5451-01A-01D-1501-10	26706316	115636591	19898156	46	33358											
OR52J3	119679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5068347	5068347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	5068347	G	A	5068347	3	1	567	1	0	0	0	0	1	0	0	0	11129	1348	47	2	594	2	OR52J3	11	5068347	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10		5068347	129938169	47	33359											
F2	2147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	46747604	46747604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	46747604	A	G	46747604	3	3	567	1	0	0	0	0	1	0	0	0	5344	43	2	3	781	3	F2	11	46747604	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	41679257	46747604	88258912	48	33360											
CPSF7	79869	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61183665	61183665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	61183665	G	T	61183665	3	4	567	1	0	0	0	0	1	0	0	0	3832	1174	41	4	554	4	CPSF7	11	61183665	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	14436061	61183665	73822851	49	33361											
PYGM	5837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64514199	64514199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	64514199	A	G	64514199	3	3	567	1	0	0	0	0	1	0	0	0	12875	391	14	3	71	3	PYGM	11	64514199	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	3330534	64514199	70492317	50	33362											
PDGFD	80310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	103797665	103797665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	103797665	C	A	103797665	3	1	567	1	0	0	0	0	1	0	0	0	11667	623	22	4	158	4	PDGFD	11	103797665	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	39283466	103797665	31208851	51	33363											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108201113	108201113	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	108201113	A	T	108201113	3	4	567	1	0	0	0	0	1	0	0	0	1109	14	1	5	7674	5	ATM	11	108201113	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	4403448	108201113	26805403	52	33364											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	108203617	108203617	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	-	108203617	G	-	108203617	7	5	567	1	0	1	0	1	0	0	0	0	1109	933	33	0	8123	0	ATM	11	108203617	Frame_Shift_Del	DEL	G	TCGA-CZ-5451-01A-01D-1501-10	2504	108203617	26802899	53	33365											
TNFRSF1A	7132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6439822	6439822	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	6439822	G	T	6439822	2	4	567	1	0	0	0	0	0	0	0	1	16305	1161	41	4		4	TNFRSF1A	12	6439822	Silent	SNP	G	TCGA-CZ-5451-01A-01D-1501-10		6439822	127412073	54	33366											
OR6C68	403284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55886972	55886972	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	55886972	G	C	55886972	3	2	567	1	0	0	0	0	1	0	0	0	11203	1000	35	4	828	4	OR6C68	12	55886972	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	49447150	55886972	77964923	55	33367											
OR6C4	341418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55945508	55945508	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	55945508	C	G	55945508	3	3	567	1	0	0	0	0	1	0	0	0	11200	912	32	4	500	4	OR6C4	12	55945508	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	58536	55945508	77906387	56	33368											
PWP1	11137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	108082496	108082496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	108082496	G	A	108082496	3	1	567	1	0	0	0	0	1	0	0	0	12856	1261	44	2	246	2	PWP1	12	108082496	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	52136988	108082496	25769399	57	33369											
KNTC1	9735	hgsc.bcm.edu;ucsc.edu	37	12	123028814	123028814	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	-	123028814	G	-	123028814	7	5	567	1	0	1	0	1	0	0	0	0	8435	1348	47	0	693	0	KNTC1	12	123028814	Frame_Shift_Del	DEL	G	TCGA-CZ-5451-01A-01D-1501-10	14946318	123028814	10823081	58	33370											
ANKLE2	23141	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133327385	133327385	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	133327385	T	A	133327385	3	1	567	1	0	0	0	0	1	0	0	0	633	1435	50	5	2169	5	ANKLE2	12	133327385	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	10298571	133327385	524510	59	33371											
PNN	5411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	39645318	39645318	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	39645318	T	C	39645318	2	2	567	1	0	0	0	0	0	0	0	1	12167	1567	55	3		3	PNN	14	39645318	Silent	SNP	T	TCGA-CZ-5451-01A-01D-1501-10		39645318	67704222	60	33372											
FBXO34	55030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55817639	55817639	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	55817639	T	G	55817639	2	3	567	1	0	0	0	0	0	0	0	1	5751	1567	55	5		5	FBXO34	14	55817639	Silent	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	16172321	55817639	51531901	61	33373											
DYNC1H1	1778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	102446833	102446833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	102446833	A	G	102446833	3	3	567	1	0	0	0	0	1	0	0	0	4843	449	16	3	925	3	DYNC1H1	14	102446833	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	46629194	102446833	4902707	62	33374											
ATP8B4	79895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	50168715	50168715	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	50168715	C	T	50168715	2	4	567	1	0	0	0	0	0	0	0	1	1197	813	29	2		2	ATP8B4	15	50168715	Silent	SNP	C	TCGA-CZ-5451-01A-01D-1501-10		50168715	52362677	63	33375											
LASS3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	101009686	101009686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	101009686	C	G	101009686	3	3	567	1	0	0	0	0	1	0	0	0	8647	710	25	4	421	4	LASS3	15	101009686	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	50840971	101009686	1521706	64	33376											
C16orf89	146556	broad.mit.edu	37	16	5115948	5115948	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	5115948	G	G	5115948	3	3	567	1	0	0	0	0	1	0	0	0	1844	623	22	4	1413	4	C16orf89	16	5115948	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10		5115948	85238805	65	33377											
ABCC12	94160	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	48149472	48149472	+	Missense_Mutation	SNP	G	G	A	rs146005796		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	48149472	G	A	48149472	3	1	567	1	0	0	0	0	1	0	0	0	52	1116	39	1	2304	1	ABCC12	16	48149472	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	43033524	48149472	42205281	66	33378											
CNOT1	23019	hgsc.bcm.edu;ucsc.edu	37	16	58555162	58555168	+	Frame_Shift_Del	DEL	AAGGTAA	AAGGTAA	-	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	AAGGTAA	AAGGTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	-	58555168	AAGGTAA	-	58555162	7	5	567	1	0	1	0	1	0	0	0	0	3619	246	9	0	161	0	CNOT1	16	58555162	Frame_Shift_Del	DEL	AAGGTAA	TCGA-CZ-5451-01A-01D-1501-10	10405690	58555162	31799591	67	33379											
TUBB3	10381	broad.mit.edu;ucsc.edu	37	16	89986049	89986049	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	89986049	C	C	89986049	3	2	567	1	0	0	0	0	1	0	0	0	16769	1464	51	3		3	TUBB3	16	89986049	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	31430887	89986049	368704	68	33380											
TUBB3	10381	broad.mit.edu	37	16	89986131	89986131	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	89986131	G	G	89986131	3	3	567	1	0	0	0	0	1	0	0	0	16769	874	31	4		4	TUBB3	16	89986131	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10	82	89986131	368622	69	33381											
TUSC5	286753	broad.mit.edu;ucsc.edu	37	17	1198861	1198861	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	1198861	G	G	1198861	3	3	567	1	0	0	0	0	1	0	0	0	16791	507	18	4	470	4	TUSC5	17	1198861	Missense_Mutation	SNP	C	TCGA-CZ-5451-01A-01D-1501-10		1198861	79996349	70	33382											
MYO1C	4641	hgsc.bcm.edu;ucsc.edu	37	17	1382903	1382903	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	-	1382903	G	-	1382903	7	5	567	1	0	1	0	1	0	0	0	0	10077	971	34	0	2288	0	MYO1C	17	1382903	Frame_Shift_Del	DEL	G	TCGA-CZ-5451-01A-01D-1501-10	184042	1382903	79812307	71	33383											
SLC5A10	125206	broad.mit.edu;ucsc.edu	37	17	18874338	18874338	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	18874338	C	C	18874338	3	2	567	1	0	0	0	0	1	0	0	0	14675	1435	50	3	683	3	SLC5A10	17	18874338	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	17491435	18874338	62320872	72	33384											
SLC47A2	146802	broad.mit.edu;ucsc.edu	37	17	19619790	19619790	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	19619790	G	G	19619790	3	3	567	1	0	0	0	0	1	0	0	0	14661	72	3	3	1797	3	SLC47A2	17	19619790	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	745452	19619790	61575420	73	33385											
RARA	5914	broad.mit.edu;ucsc.edu	37	17	38508320	38508320	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	38508320	G	G	38508320	3	3	567	1	0	0	0	0	1	0	0	0	13065	391	14	3	809	3	RARA	17	38508320	Missense_Mutation	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	18888530	38508320	42686890	74	33386											
WFIKKN2	124857	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48916926	48916926	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	48916926	T	A	48916926	3	1	567	1	0	0	0	0	1	0	0	0	17371	1522	53	5	283	5	WFIKKN2	17	48916926	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	10408606	48916926	32278284	75	33387											
HELZ	9931	broad.mit.edu;ucsc.edu	37	17	65141857	65141857	+	Splice_Site	SNP	A	G	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	65141857	G	G	65141857	5	3	567	1	0	0	0	0	0	0	1	0	7056	405	14	3	3109	3	HELZ	17	65141857	Splice_Site	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	16224931	65141857	16053353	76	33388											
BAHCC1	57597	broad.mit.edu	37	17	79423404	79423404	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	-	79423404	-	-	79423404	7	5	567	1	0	1	0	1	0	0	0	0	1296	131	5	0	4544	0	BAHCC1	17	79423404	Frame_Shift_Del	DEL	A	TCGA-CZ-5451-01A-01D-1501-10	14281547	79423404	1771806	77	33389											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	7042148	7042148	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	7042148	G	A	7042148	2	1	567	1	0	0	0	0	0	0	0	1	8612	1368	48	2		2	LAMA1	18	7042148	Silent	SNP	G	TCGA-CZ-5451-01A-01D-1501-10		7042148	71035100	78	33390											
ROCK1	6093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	18546995	18546995	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	18546995	G	A	18546995	4	1	567	1	0	0	0	0	0	1	0	0	13530	1328	46	2	857	2	ROCK1	18	18546995	Nonsense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	11504847	18546995	59530253	79	33391											
ESCO1	114799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	19119910	19119910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	19119910	G	A	19119910	3	1	567	1	0	0	0	0	1	0	0	0	5250	1174	41	2	524	2	ESCO1	18	19119910	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	572915	19119910	58957338	80	33392											
ONECUT2	9480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	55143848	55143848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	55143848	G	A	55143848	3	1	567	1	0	0	0	0	1	0	0	0	10876	1145	40	1	1414	1	ONECUT2	18	55143848	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	36023938	55143848	22933400	81	33393											
SERPINB8	5271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	61650927	61650927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	-	61650927	C	-	61650927	7	5	567	1	0	1	0	1	0	0	0	0	14120	478	17	0	553	0	SERPINB8	18	61650927	Frame_Shift_Del	DEL	C	TCGA-CZ-5451-01A-01D-1501-10	6507079	61650927	16426321	82	33394											
IL27RA	9466	broad.mit.edu;ucsc.edu	37	19	14157347	14157347	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	14157347	C	C	14157347	3	2	567	1	0	0	0	0	1	0	0	0	7688	1696	59	3	1088	3	IL27RA	19	14157347	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10		14157347	44971636	83	33395											
CPAMD8	27151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17115085	17115085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	17115085	T	C	17115085	3	2	567	1	0	0	0	0	1	0	0	0	3797	1406	49	3	5126	3	CPAMD8	19	17115085	Missense_Mutation	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	2957738	17115085	42013898	84	33396											
VASP	7408	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46024608	46024608	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	G	46024608	T	G	46024608	2	3	567	1	0	0	0	0	0	0	0	1	17140	1770	62	5		5	VASP	19	46024608	Silent	SNP	T	TCGA-CZ-5451-01A-01D-1501-10	28909523	46024608	13104375	85	33397											
DHDH	27294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49439432	49439433	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	49439433	-	A	49439432	7	5	567	1	0	1	1	0	0	0	0	0	4481	644	23	0	356	0	DHDH	19	49439432	Frame_Shift_Ins	INS	-	TCGA-CZ-5451-01A-01D-1501-10	3414824	49439432	9689551	86	33398	429	2									
DHDH	27294	hgsc.bcm.edu	37	19	49439433	49439433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	A	49439433	G	A	49439433	3	1	567	1	0	0	0	0	1	0	0	0	4481	1058	37	1	357	1	DHDH	19	49439433	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10	1	49439433	9689550	87	33399	429	2									
PCSK2	5126	broad.mit.edu;hgsc.bcm.edu	37	20	17417410	17417410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	T	17417410	G	T	17417410	3	4	567	1	0	0	0	0	1	0	0	0	11608	1029	36	4	797	4	PCSK2	20	17417410	Missense_Mutation	SNP	G	TCGA-CZ-5451-01A-01D-1501-10		17417410	45608110	88	33400											
ITCH	83737	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33012330	33012330	+	Silent	SNP	A	A	C	novel		TCGA-CZ-5451-01A-01D-1501-10	TCGA-CZ-5451-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1923d68-1d1e-4b59-b643-09e2c5969efd	9929ec38-d099-46f7-bcb4-7f6262394788	C	33012330	A	C	33012330	2	2	567	1	0	0	0	0	0	0	0	1	7875	86	3	5		5	ITCH	20	33012330	Silent	SNP	A	TCGA-CZ-5451-01A-01D-1501-10	15594920	33012330	30013190	89	33401											
TRIM45	80263	broad.mit.edu	37	1	117661045	117661045	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	117661045	T	T	117661045	3	4	568	1	0	0	0	0	1	0	0	0	16532	652	23	1	929	1	TRIM45	1	117661045	Missense_Mutation	SNP	C	TCGA-CZ-5452-01A-01D-1501-10		117661045	131589576	1	33402											
LYST	1130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	235971939	235971939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	235971939	G	A	235971939	4	1	568	1	0	0	0	0	0	1	0	0	9135	1299	45	2	9422	2	LYST	1	235971939	Nonsense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10	118310894	235971939	13278682	2	33403											
CEP170	9859	broad.mit.edu	37	1	243362432	243362432	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	243362432	A	A	243362432	3	1	568	1	0	0	0	0	1	0	0	0	3252	680	24	4	4279	4	CEP170	1	243362432	Missense_Mutation	SNP	C	TCGA-CZ-5452-01A-01D-1501-10	7390493	243362432	5888189	3	33404											
NT5C1B	93034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	18765441	18765441	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	18765441	C	T	18765441	2	4	568	1	0	0	0	0	0	0	0	1	10693	796	28	2		2	NT5C1B	2	18765441	Silent	SNP	C	TCGA-CZ-5452-01A-01D-1501-10		18765441	224433932	4	33405											
RASGRP3	25780	hgsc.bcm.edu;ucsc.edu	37	2	33747059	33747059	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	-	33747059	A	-	33747059	7	5	568	1	0	1	0	1	0	0	0	0	13089	247	9	0	424	0	RASGRP3	2	33747059	Frame_Shift_Del	DEL	A	TCGA-CZ-5452-01A-01D-1501-10	14981618	33747059	209452314	5	33406											
C2orf57	165100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	232458055	232458055	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	C	232458055	A	C	232458055	3	2	568	1	0	0	0	0	1	0	0	0	2180	69	3	5	395	5	C2orf57	2	232458055	Missense_Mutation	SNP	A	TCGA-CZ-5452-01A-01D-1501-10	198710996	232458055	10741318	6	33407											
BAP1	8314	ucsc.edu	37	3	52438499	52438499	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	T	T	T	-	T	T	Unknown	Valid	Somatic	.	WXS	PGM	.	.	Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	-	52438499	T	-	52438499	7	5	568	1	0	1	0	1	0	0	0	0	1311	1435	50	0	993	0	BAP1	3	52438499	Frame_Shift_Del	DEL	T	TCGA-CZ-5452-01A-01D-1501-10		52438499	145583931	7	33408											
C3orf63	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	56667432	56667432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	56667432	G	T	56667432	3	4	568	1	0	0	0	0	1	0	0	0	2241	1368	48	4	1713	4	C3orf63	3	56667432	Missense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10	4228933	56667432	141354998	8	33409											
PRKCI	5584	broad.mit.edu	37	3	169940502	169940503	+	Frame_Shift_Del	DEL	AG	-	-	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	-	169940503	-	-	169940502	7	5	568	1	0	1	0	1	0	0	0	0	12524	175	7	0	47	0	PRKCI	3	169940502	Frame_Shift_Del	DEL	AG	TCGA-CZ-5452-01A-01D-1501-10	113273070	169940502	28081928	9	33410											
DRD5	1816	broad.mit.edu	37	4	9783962	9783962	+	Silent	SNP	G	T	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	9783962	T	T	9783962	2	4	568	1	0	0	0	0	0	0	0	1	4762	1335	47	4		4	DRD5	4	9783962	Silent	SNP	G	TCGA-CZ-5452-01A-01D-1501-10		9783962	181370314	10	33411											
ATP10D	57205	hgsc.bcm.edu	37	4	47560001	47560001	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	47560001	G	A	47560001	2	1	568	1	0	0	0	0	0	0	0	1	1118	962	34	2		2	ATP10D	4	47560001	Silent	SNP	G	TCGA-CZ-5452-01A-01D-1501-10	37776039	47560001	143594275	11	33412											
MOCS2	4338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	52404436	52404436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	52404436	G	A	52404436	3	1	568	1	0	0	0	0	1	0	0	0	9698	1377	48	2	721	2	MOCS2	5	52404436	Missense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10		52404436	128510824	12	33413											
PCDHGA5	56110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140745027	140745027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	140745027	G	A	140745027	3	1	568	1	0	0	0	0	1	0	0	0	11564	1174	41	2	1132	2	PCDHGA5	5	140745027	Missense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10	88340591	140745027	40170233	13	33414											
FAM71B	153745	broad.mit.edu;ucsc.edu	37	5	156592756	156592756	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	156592756	A	A	156592756	2	1	568	1	0	0	0	0	0	0	0	1	5615	991	35	2		2	FAM71B	5	156592756	Silent	SNP	G	TCGA-CZ-5452-01A-01D-1501-10	15847729	156592756	24322504	14	33415	430	2									
FAM71B	153745	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	156592758	156592758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	156592758	C	T	156592758	3	4	568	1	0	0	0	0	1	0	0	0	5615	768	27	1	1403	1	FAM71B	5	156592758	Missense_Mutation	SNP	C	TCGA-CZ-5452-01A-01D-1501-10	2	156592758	24322502	15	33416	430	2									
BTBD9	114781	broad.mit.edu;ucsc.edu	37	6	38160335	38160335	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	38160335	T	T	38160335	3	4	568	1	0	0	0	0	1	0	0	0	1550	1174	41	4	245	4	BTBD9	6	38160335	Missense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10		38160335	132954732	16	33417											
LAMA2	3908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	129371227	129371227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	129371227	C	A	129371227	3	1	568	1	0	0	0	0	1	0	0	0	8613	855	30	4	283	4	LAMA2	6	129371227	Missense_Mutation	SNP	C	TCGA-CZ-5452-01A-01D-1501-10	91210892	129371227	41743840	17	33418											
KIAA0415	0	broad.mit.edu;ucsc.edu	37	7	4830337	4830337	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	C	4830337	C	C	4830337	3	2	568	1	0	0	0	0	1	0	0	0	8182	1522	53	3	2034	3	KIAA0415	7	4830337	Missense_Mutation	SNP	T	TCGA-CZ-5452-01A-01D-1501-10		4830337	154308326	18	33419											
PI15	51050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	75756222	75756222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	75756222	G	T	75756222	3	4	568	1	0	0	0	0	1	0	0	0	11875	1174	41	4	286	4	PI15	8	75756222	Missense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10		75756222	70607800	19	33420											
ALDH1A1	216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	75555088	75555088	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	75555088	G	A	75555088	2	1	568	1	0	0	0	0	0	0	0	1	490	929	33	2		2	ALDH1A1	9	75555088	Silent	SNP	G	TCGA-CZ-5452-01A-01D-1501-10		75555088	65658343	20	33421											
HEPHL1	341208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	93836116	93836116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	93836116	G	T	93836116	3	4	568	1	0	0	0	0	1	0	0	0	7062	942	33	4	2670	4	HEPHL1	11	93836116	Missense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10		93836116	41170400	21	33422											
KITLG	4254	hgsc.bcm.edu;ucsc.edu	37	12	88939566	88939566	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	-	88939566	T	-	88939566	7	5	568	1	0	1	0	1	0	0	0	0	8337	1493	52	0	761	0	KITLG	12	88939566	Frame_Shift_Del	DEL	T	TCGA-CZ-5452-01A-01D-1501-10		88939566	44912329	22	33423											
RBM19	9904	hgsc.bcm.edu;ucsc.edu	37	12	114364876	114364877	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	114364877	-	T	114364876	7	5	568	1	0	1	1	0	0	0	0	0	13134	922	32	0	687	0	RBM19	12	114364876	Frame_Shift_Ins	INS	-	TCGA-CZ-5452-01A-01D-1501-10	25425310	114364876	19487019	23	33424											
RALGAPA1	253959	broad.mit.edu;hgsc.bcm.edu	37	14	36143766	36143766	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	36143766	G	A	36143766	4	1	568	1	0	0	0	0	0	1	0	0	13026	1299	45	2	3083	2	RALGAPA1	14	36143766	Nonsense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10		36143766	71205774	24	33425											
IQGAP1	8826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91020913	91020913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	C	91020913	A	C	91020913	3	2	568	1	0	0	0	0	1	0	0	0	7821	333	12	5	3223	5	IQGAP1	15	91020913	Missense_Mutation	SNP	A	TCGA-CZ-5452-01A-01D-1501-10		91020913	11510479	25	33426											
GPATCH8	23131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42476146	42476146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	42476146	C	A	42476146	3	1	568	1	0	0	0	0	1	0	0	0	6601	681	24	4	1213	4	GPATCH8	17	42476146	Missense_Mutation	SNP	C	TCGA-CZ-5452-01A-01D-1501-10		42476146	38719064	26	33427											
C3	718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6712358	6712358	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	6712358	G	A	6712358	2	1	568	1	0	0	0	0	0	0	0	1	2206	1074	38	1		1	C3	19	6712358	Silent	SNP	G	TCGA-CZ-5452-01A-01D-1501-10		6712358	52416625	27	33428											
LIPE	3991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	42912472	42912472	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	C	42912472	G	C	42912472	3	2	568	1	0	0	0	0	1	0	0	0	8828	1281	45	4	1840	4	LIPE	19	42912472	Missense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10	36200114	42912472	16216511	28	33429											
PSG3	5671	broad.mit.edu	37	19	43234081	43234081	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	C	43234081	C	C	43234081	3	2	568	1	0	0	0	0	1	0	0	0	12666	1194	42	4	461	4	PSG3	19	43234081	Missense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10	321609	43234081	15894902	29	33430											
PTOV1	53635	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50358311	50358311	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	A	50358311	T	A	50358311	3	1	568	1	0	0	0	0	1	0	0	0	12780	1580	55	5	553	5	PTOV1	19	50358311	Missense_Mutation	SNP	T	TCGA-CZ-5452-01A-01D-1501-10	7124230	50358311	8770672	30	33431											
ZNF160	90338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53577475	53577475	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	53577475	C	T	53577475	2	4	568	1	0	0	0	0	0	0	0	1	17751	842	30	2		2	ZNF160	19	53577475	Silent	SNP	C	TCGA-CZ-5452-01A-01D-1501-10	3219164	53577475	5551508	31	33432											
NLRP8	126205	broad.mit.edu;ucsc.edu	37	19	56467043	56467043	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	56467043	T	T	56467043	3	4	568	1	0	0	0	0	1	0	0	0	10490	1087	38	4	1629	4	NLRP8	19	56467043	Missense_Mutation	SNP	G	TCGA-CZ-5452-01A-01D-1501-10	2889568	56467043	2661940	32	33433											
ZNF543	125919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57838032	57838032	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	G	57838032	C	G	57838032	4	3	568	1	0	0	0	0	0	1	0	0	17988	518	18	4	187	4	ZNF543	19	57838032	Nonsense_Mutation	SNP	C	TCGA-CZ-5452-01A-01D-1501-10	1370989	57838032	1290951	33	33434											
RRBP1	6238	broad.mit.edu;ucsc.edu	37	20	17641024	17641024	+	Silent	SNP	G	T	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	17641024	T	T	17641024	2	4	568	1	0	0	0	0	0	0	0	1	13691	1335	47	4		4	RRBP1	20	17641024	Silent	SNP	G	TCGA-CZ-5452-01A-01D-1501-10		17641024	45384496	34	33435											
OTC	5009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	38262963	38262963	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5452-01A-01D-1501-10	TCGA-CZ-5452-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	96bd68cb-5d8e-4de1-88ca-5f30fbdde036	fdf88258-9b8a-434a-b396-df5242420b20	T	38262963	C	T	38262963	2	4	568	1	0	0	0	0	0	0	0	1	11308	883	31	1		1	OTC	23	38262963	Silent	SNP	C	TCGA-CZ-5452-01A-01D-1501-10		38262963	117007597	35	33436											
GALE	2582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24124241	24124241	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	24124241	C	G	24124241	3	3	569	1	0	0	0	0	1	0	0	0	6209	652	23	4	602	4	GALE	1	24124241	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10		24124241	225126380	1	33437											
RUNX3	864	broad.mit.edu	37	1	25229102	25229102	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	25229102	-	-	25229102	7	5	569	1	0	1	0	1	0	0	0	0	13762	1335	47	0	492	0	RUNX3	1	25229102	Frame_Shift_Del	DEL	G	TCGA-CZ-5453-01A-01D-1501-10	1104861	25229102	224021519	2	33438											
CLSPN	63967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36214086	36214086	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	36214086	T	-	36214086	7	5	569	1	0	1	0	1	0	0	0	0	3562	1580	55	0	1679	0	CLSPN	1	36214086	Frame_Shift_Del	DEL	T	TCGA-CZ-5453-01A-01D-1501-10	10984984	36214086	213036535	3	33439											
KIAA0467	0	broad.mit.edu	37	1	43880873	43880873	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	43880873	-	-	43880873	7	5	569	1	0	1	0	1	0	0	0	0	8185	870	30	0		0	KIAA0467	1	43880873	Frame_Shift_Del	DEL	C	TCGA-CZ-5453-01A-01D-1501-10	7666787	43880873	205369748	4	33440											
IPO13	9670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44422057	44422057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	44422057	C	T	44422057	3	4	569	1	0	0	0	0	1	0	0	0	7801	710	25	2	897	2	IPO13	1	44422057	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	541184	44422057	204828564	5	33441											
OSBPL9	114883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	52249639	52249639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	52249639	T	A	52249639	3	1	569	1	0	0	0	0	1	0	0	0	11291	1403	49	5	1740	5	OSBPL9	1	52249639	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	7827582	52249639	197000982	6	33442											
POLR3C	10623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	145597524	145597524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	145597524	C	T	145597524	3	4	569	1	0	0	0	0	1	0	0	0	12237	536	19	1	568	1	POLR3C	1	145597524	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	93347885	145597524	103653097	7	33443											
PBXIP1	57326	broad.mit.edu;hgsc.bcm.edu	37	1	154920626	154920626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	154920626	C	T	154920626	3	4	569	1	0	0	0	0	1	0	0	0	11503	623	22	2	1593	2	PBXIP1	1	154920626	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	9323102	154920626	94329995	8	33444											
FCGR3B	2215	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161595993	161595993	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	161595993	C	T	161595993	2	4	569	1	0	0	0	0	0	0	0	1	5792	622	22	2		2	FCGR3B	1	161595993	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	6675367	161595993	87654628	9	33445											
SLC30A10	55532	broad.mit.edu	37	1	220057507	220057507	+	RNA	DEL	C	-	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	220057507	-	-	220057507	6	5	569	0	1	1	0	1	0	0	0	0	14567	870	30	0		0	SLC30A10	1	220057507	RNA	DEL	C	TCGA-CZ-5453-01A-01D-1501-10	58461514	220057507	29193114	10	33446											
EPHX1	2052	broad.mit.edu;ucsc.edu	37	1	226030115	226030115	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	226030115	G	G	226030115	3	3	569	1	0	0	0	0	1	0	0	0	5181	304	11	3	1002	3	EPHX1	1	226030115	Missense_Mutation	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	5972608	226030115	23220506	11	33447											
HADHB	3032	broad.mit.edu;ucsc.edu	37	2	26502013	26502013	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	26502013	C	C	26502013	3	2	569	1	0	0	0	0	1	0	0	0	6951	1725	60	3	671	3	HADHB	2	26502013	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10		26502013	216697360	12	33448											
CAD	790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27456649	27456649	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	27456649	C	T	27456649	2	4	569	1	0	0	0	0	0	0	0	1	2567	813	29	2		2	CAD	2	27456649	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	954636	27456649	215742724	13	33449											
TANK	10010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	162091890	162091890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	162091890	C	T	162091890	3	4	569	1	0	0	0	0	1	0	0	0	15558	893	31	1	1198	1	TANK	2	162091890	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	134635241	162091890	81107483	14	33450											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52677265	52677265	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	52677265	G	-	52677265	7	5	569	1	0	1	0	1	0	0	0	0	11498	1130	39	0	3994	0	PBRM1	3	52677265	Frame_Shift_Del	DEL	G	TCGA-CZ-5453-01A-01D-1501-10		52677265	145345165	15	33451											
SLMAP	7871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	57913033	57913033	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	57913033	C	G	57913033	3	3	569	1	0	0	0	0	1	0	0	0	14762	623	22	4	2436	4	SLMAP	3	57913033	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	5235768	57913033	140109397	16	33452											
SLC9A10	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	111923204	111923204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	111923204	A	C	111923204	3	2	569	1	0	0	0	0	1	0	0	0	14723	246	9	5	1552	5	SLC9A10	3	111923204	Missense_Mutation	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	54010171	111923204	86099226	17	33453											
COL6A6	131873	hgsc.bcm.edu;ucsc.edu	37	3	130394072	130394072	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	130394072	C	-	130394072	7	5	569	1	0	1	0	1	0	0	0	0	3705	507	18	0	6765	0	COL6A6	3	130394072	Frame_Shift_Del	DEL	C	TCGA-CZ-5453-01A-01D-1501-10	18470868	130394072	67628358	18	33454											
BOD1L	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	13601273	13601274	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	13601274	AG	-	13601273	7	5	569	1	0	1	0	1	0	0	0	0	1483	175	7	0	1972	0	BOD1L	4	13601273	Frame_Shift_Del	DEL	AG	TCGA-CZ-5453-01A-01D-1501-10		13601273	177553003	19	33455											
TMPRSS11F	389208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	68995527	68995527	+	Splice_Site	SNP	C	C	T	rs148740696	alternate_allele	TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	68995527	C	T	68995527	5	4	569	1	0	0	0	0	0	0	1	0	16255	550	19	1	1344	1	TMPRSS11F	4	68995527	Splice_Site	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	55394254	68995527	122158749	20	33456											
TSPAN5	10098	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	99407929	99407929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	99407929	C	T	99407929	3	4	569	1	0	0	0	0	1	0	0	0	16662	710	25	2	591	2	TSPAN5	4	99407929	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	30412402	99407929	91746347	21	33457											
BRD9	65980	broad.mit.edu;hgsc.bcm.edu	37	5	891953	891953	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	891953	G	A	891953	2	1	569	1	0	0	0	0	0	0	0	1	1509	1219	43	2		2	BRD9	5	891953	Silent	SNP	G	TCGA-CZ-5453-01A-01D-1501-10		891953	180023307	22	33458											
NNT	23530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	43702815	43702815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	43702815	C	A	43702815	3	1	569	1	0	0	0	0	1	0	0	0	10517	681	24	4	3166	4	NNT	5	43702815	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	42810862	43702815	137212445	23	33459											
GPR98	84059	broad.mit.edu;hgsc.bcm.edu	37	5	90149227	90149227	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	90149227	A	G	90149227	2	3	569	1	0	0	0	0	0	0	0	1	6728	378	14	3		3	GPR98	5	90149227	Silent	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	46446412	90149227	90766033	24	33460											
SLCO4C1	353189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	101592957	101592957	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	101592957	G	C	101592957	4	2	569	1	0	0	0	0	0	1	0	0	14743	1294	45	4	867	4	SLCO4C1	5	101592957	Nonsense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	11443730	101592957	79322303	25	33461											
REEP2	51308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137776732	137776732	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	137776732	C	T	137776732	2	4	569	1	0	0	0	0	0	0	0	1	13218	668	24	2		2	REEP2	5	137776732	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	36183775	137776732	43138528	26	33462											
LARP1	23367	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	154181675	154181676	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	154181676	TT	-	154181675	7	5	569	1	0	1	0	1	0	0	0	0	8635	1725	60	0	1636	0	LARP1	5	154181675	Frame_Shift_Del	DEL	TT	TCGA-CZ-5453-01A-01D-1501-10	16404943	154181675	26733585	27	33463											
STC2	8614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	172745139	172745139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	172745139	A	G	172745139	3	3	569	1	0	0	0	0	1	0	0	0	15288	333	12	3	292	3	STC2	5	172745139	Missense_Mutation	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	18563464	172745139	8170121	28	33464											
CPLX2	10814	broad.mit.edu	37	5	175306022	175306022	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	175306022	C	C	175306022	3	2	569	1	0	0	0	0	1	0	0	0	3807	1145	40	4	149	4	CPLX2	5	175306022	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	2560883	175306022	5609238	29	33465											
ZKSCAN3	80317	hgsc.bcm.edu	37	6	28327609	28327635	+	In_Frame_Del	DEL	GGAGCAGATCCTGGAGCTGCTGGTGCT	GGAGCAGATCCTGGAGCTGCTGGTGCT	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	GGAGCAGATCCTGGAGCTGCTGGTGCT	GGAGCAGATCCTGGAGCTGCTGGTGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	28327635	GGAGCAGATCCTGGAGCTGCTGGTGCT	-	28327609	7	5	569	1	0	1	0	1	0	0	0	0	17700	991	35	0	248	0	ZKSCAN3	6	28327609	In_Frame_Del	DEL	GGAGCAGATCCTGGAGCTGCTGGTGCT	TCGA-CZ-5453-01A-01D-1501-10		28327609	142787458	30	33466											
SNX8	29886	broad.mit.edu;ucsc.edu	37	7	2314823	2314823	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	2314823	T	T	2314823	2	4	569	1	0	0	0	0	0	0	0	1	14921	581	21	2		2	SNX8	7	2314823	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10		2314823	156823840	31	33467											
USP42	84132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	6154957	6154957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	6154957	T	C	6154957	3	2	569	1	0	0	0	0	1	0	0	0	17085	1522	53	3	251	3	USP42	7	6154957	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	3840134	6154957	152983706	32	33468											
DLX6	1750	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	96639202	96639202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	96639202	C	T	96639202	3	4	569	1	0	0	0	0	1	0	0	0	4577	768	27	1	735	1	DLX6	7	96639202	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	90484245	96639202	62499461	33	33469											
POT1	25913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	124503402	124503402	+	Splice_Site	SNP	A	A	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	124503402	A	T	124503402	5	4	569	1	0	0	0	0	0	0	1	0	12267	405	14	5	1404	5	POT1	7	124503402	Splice_Site	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	27864200	124503402	34635261	34	33470											
AKR1B1	231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134143812	134143812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	134143812	C	T	134143812	3	4	569	1	0	0	0	0	1	0	0	0	466	594	21	2	987	2	AKR1B1	7	134143812	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	9640410	134143812	24994851	35	33471											
EIF2C2	27161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	141545588	141545588	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	141545588	C	A	141545588	2	1	569	1	0	0	0	0	0	0	0	1	5008	465	17	4		4	EIF2C2	8	141545588	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10		141545588	4818434	36	33472											
MELK	9833	broad.mit.edu	37	9	36665415	36665415	+	Silent	SNP	A	G	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	36665415	G	G	36665415	2	3	569	1	0	0	0	0	0	0	0	1	9477	146	6	3		3	MELK	9	36665415	Silent	SNP	A	TCGA-CZ-5453-01A-01D-1501-10		36665415	104548016	37	33473											
VPS13A	23230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	79936445	79936445	+	Silent	SNP	C	C	T	rs139782359		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	79936445	C	T	79936445	2	4	569	1	0	0	0	0	0	0	0	1	17201	883	31	1		1	VPS13A	9	79936445	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	43271030	79936445	61276986	38	33474											
CACNB2	783	hgsc.bcm.edu	37	10	18827236	18827237	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	18827237	-	C	18827236	7	5	569	1	0	1	1	0	0	0	0	0	2555	971	34	0	1790	0	CACNB2	10	18827236	Frame_Shift_Ins	INS	-	TCGA-CZ-5453-01A-01D-1501-10		18827236	116707511	39	33475											
CCAR1	55749	broad.mit.edu;ucsc.edu	37	10	70502139	70502139	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	70502139	T	T	70502139	3	4	569	1	0	0	0	0	1	0	0	0	2732	1377	48	4	349	4	CCAR1	10	70502139	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	51674903	70502139	65032608	40	33476											
CAMK2G	818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75574945	75574945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	75574945	A	G	75574945	3	3	569	1	0	0	0	0	1	0	0	0	2604	101	4	3	175	3	CAMK2G	10	75574945	Missense_Mutation	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	5072806	75574945	59959802	41	33477											
ATE1	11101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	123683801	123683801	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	123683801	G	A	123683801	2	1	569	1	0	0	0	0	0	0	0	1	1078	1277	45	2		2	ATE1	10	123683801	Silent	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	48108856	123683801	11850946	42	33478											
GPR26	2849	broad.mit.edu;ucsc.edu	37	10	125447555	125447555	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	125447555	A	A	125447555	3	1	569	1	0	0	0	0	1	0	0	0	6691	1058	37	1	903	1	GPR26	10	125447555	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	1763754	125447555	10087192	43	33479											
ZRANB1	54764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	126662823	126662823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	126662823	T	C	126662823	3	2	569	1	0	0	0	0	1	0	0	0	18234	1821	63	3	1301	3	ZRANB1	10	126662823	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	1215268	126662823	8871924	44	33480											
CDHR5	53841	hgsc.bcm.edu	37	11	618106	618106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	618106	C	T	618106	3	4	569	1	0	0	0	0	1	0	0	0	3124	652	23	1	579	1	CDHR5	11	618106	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10		618106	134388410	45	33481											
LSP1	4046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1908764	1908764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	1908764	G	T	1908764	3	4	569	1	0	0	0	0	1	0	0	0	9070	1261	44	4	1029	4	LSP1	11	1908764	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	1290658	1908764	133097752	46	33482											
ACP2	53	hgsc.bcm.edu;ucsc.edu	37	11	47267291	47267291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	47267291	T	A	47267291	3	1	569	1	0	0	0	0	1	0	0	0	163	1725	60	5	944	5	ACP2	11	47267291	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	45358527	47267291	87739225	47	33483											
TMEM133	83935	broad.mit.edu;ucsc.edu	37	11	100863191	100863191	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	100863191	G	G	100863191	3	3	569	1	0	0	0	0	1	0	0	0	16061	391	14	3	154	3	TMEM133	11	100863191	Missense_Mutation	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	53595900	100863191	34143325	48	33484											
ANKK1	255239	broad.mit.edu	37	11	113270770	113270770	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	113270770	T	T	113270770	3	4	569	1	0	0	0	0	1	0	0	0	631	1183	41	4	2109	4	ANKK1	11	113270770	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	12407579	113270770	21735746	49	33485											
SLC15A4	121260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	129293991	129293991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	129293991	G	A	129293991	3	1	569	1	0	0	0	0	1	0	0	0	14414	942	33	2	714	2	SLC15A4	12	129293991	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10		129293991	4557904	50	33486	431	2									
SLC15A4	121260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	129293993	129293993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	129293993	C	A	129293993	3	1	569	1	0	0	0	0	1	0	0	0	14414	565	20	4	716	4	SLC15A4	12	129293993	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	2	129293993	4557902	51	33487	431	2									
ZMYM2	7750	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	20638656	20638656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	20638656	G	C	20638656	3	2	569	1	0	0	0	0	1	0	0	0	17712	1175	41	4	3169	4	ZMYM2	13	20638656	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10		20638656	94531222	52	33488											
SLC46A3	283537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	29275084	29275084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	29275084	T	G	29275084	3	3	569	1	0	0	0	0	1	0	0	0	14659	1616	56	5	3	5	SLC46A3	13	29275084	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	8636428	29275084	85894794	53	33489											
SLITRK5	26050	broad.mit.edu;ucsc.edu	37	13	88329235	88329235	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	88329235	C	C	88329235	3	2	569	1	0	0	0	0	1	0	0	0	14759	1551	54	3	1594	3	SLITRK5	13	88329235	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	59054151	88329235	26840643	54	33490											
DNAJC3	5611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	96361504	96361504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	96361504	G	A	96361504	3	1	569	1	0	0	0	0	1	0	0	0	4649	942	33	2	112	2	DNAJC3	13	96361504	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	8032269	96361504	18808374	55	33491											
ATP11A	23250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	113464970	113464970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	113464970	C	T	113464970	3	4	569	1	0	0	0	0	1	0	0	0	1119	739	26	2	389	2	ATP11A	13	113464970	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	17103466	113464970	1704908	56	33492											
POLE2	5427	broad.mit.edu;ucsc.edu	37	14	50136257	50136257	+	Silent	SNP	G	A	A	rs139370609	bycluster;byfrequency;by1000genomes	TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	50136257	A	A	50136257	2	1	569	1	0	0	0	0	0	0	0	1	12204	1078	38	1		1	POLE2	14	50136257	Silent	SNP	G	TCGA-CZ-5453-01A-01D-1501-10		50136257	57213283	57	33493											
C14orf43	0	broad.mit.edu	37	14	74205845	74205845	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	74205845	A	A	74205845	2	1	569	1	0	0	0	0	0	0	0	1	1776	1190	42	2		2	C14orf43	14	74205845	Silent	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	24069588	74205845	33143695	58	33494											
ZSCAN29	146050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43661269	43661269	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	43661269	T	C	43661269	2	2	569	1	0	0	0	0	0	0	0	1	18248	1490	52	3		3	ZSCAN29	15	43661269	Silent	SNP	T	TCGA-CZ-5453-01A-01D-1501-10		43661269	58870123	59	33495											
CORO2B	10391	broad.mit.edu;hgsc.bcm.edu	37	15	69003112	69003112	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	69003112	C	T	69003112	2	4	569	1	0	0	0	0	0	0	0	1	3759	477	17	2		2	CORO2B	15	69003112	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	25341843	69003112	33528280	60	33496											
KIAA1024	23251	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	79748707	79748707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	79748707	T	A	79748707	3	1	569	1	0	0	0	0	1	0	0	0	8212	1696	59	5	220	5	KIAA1024	15	79748707	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	10745595	79748707	22782685	61	33497											
SEMA4B	10509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90768565	90768565	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	90768565	T	A	90768565	3	1	569	1	0	0	0	0	1	0	0	0	14045	1493	52	5	1499	5	SEMA4B	15	90768565	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	11019858	90768565	11762827	62	33498											
PIGQ	9091	hgsc.bcm.edu	37	16	633353	633353	+	Missense_Mutation	SNP	T	T	C	rs71391136	alternate_allele	TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	633353	T	C	633353	3	2	569	1	0	0	0	0	1	0	0	0	11903	1696	59	3	2102	3	PIGQ	16	633353	Missense_Mutation	SNP	T	TCGA-CZ-5453-01A-01D-1501-10		633353	89721400	63	33499	432	2									
PIGQ	9091	hgsc.bcm.edu	37	16	633354	633354	+	Missense_Mutation	SNP	G	G	A	rs710925	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	633354	G	A	633354	3	1	569	1	0	0	0	0	1	0	0	0	11903	1377	48	2	2103	2	PIGQ	16	633354	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	1	633354	89721399	64	33500	432	2									
HIRIP3	8479	broad.mit.edu;hgsc.bcm.edu	37	16	30006455	30006455	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	30006455	C	T	30006455	2	4	569	1	0	0	0	0	0	0	0	1	7128	912	32	2		2	HIRIP3	16	30006455	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	29373101	30006455	60348298	65	33501											
PAPD5	64282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	50261849	50261849	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	50261849	C	T	50261849	4	4	569	1	0	0	0	0	0	1	0	0	11432	827	29	2	1901	2	PAPD5	16	50261849	Nonsense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	20255394	50261849	40092904	66	33502											
RSPRY1	89970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57265167	57265167	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	57265167	A	-	57265167	7	5	569	1	0	1	0	1	0	0	0	0	13726	449	16	0	1511	0	RSPRY1	16	57265167	Frame_Shift_Del	DEL	A	TCGA-CZ-5453-01A-01D-1501-10	7003318	57265167	33089586	67	33503											
SLC7A6	9057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68328656	68328656	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	68328656	C	A	68328656	2	1	569	1	0	0	0	0	0	0	0	1	14714	581	21	4		4	SLC7A6	16	68328656	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	11063489	68328656	22026097	68	33504											
RUNDC3A	10900	hgsc.bcm.edu	37	17	42393884	42393884	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	42393884	A	T	42393884	3	4	569	1	0	0	0	0	1	0	0	0	13757	391	14	5	1119	5	RUNDC3A	17	42393884	Missense_Mutation	SNP	A	TCGA-CZ-5453-01A-01D-1501-10		42393884	38801326	69	33505											
AMZ2	51321	broad.mit.edu;hgsc.bcm.edu	37	17	66251944	66251944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	66251944	C	A	66251944	3	1	569	1	0	0	0	0	1	0	0	0	597	681	24	4	872	4	AMZ2	17	66251944	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	23858060	66251944	14943266	70	33506											
FN3K	64122	broad.mit.edu;ucsc.edu	37	17	80706748	80706748	+	Silent	SNP	T	C	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	80706748	C	C	80706748	2	2	569	1	0	0	0	0	0	0	0	1	5970	1461	51	3		3	FN3K	17	80706748	Silent	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	14454804	80706748	488462	71	33507											
PSTPIP2	9050	broad.mit.edu;hgsc.bcm.edu	37	18	43572169	43572169	+	Splice_Site	SNP	C	C	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	43572169	C	A	43572169	5	1	569	1	0	0	0	0	0	0	1	0	12732	927	32	4	279	4	PSTPIP2	18	43572169	Splice_Site	SNP	C	TCGA-CZ-5453-01A-01D-1501-10		43572169	34505079	72	33508											
ZNF236	7776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	74620408	74620408	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	74620408	G	A	74620408	2	1	569	1	0	0	0	0	0	0	0	1	17801	1103	39	1		1	ZNF236	18	74620408	Silent	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	31048239	74620408	3456840	73	33509											
MRPL54	116541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	3765311	3765311	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	3765311	A	T	3765311	3	4	569	1	0	0	0	0	1	0	0	0	9825	333	12	5	272	5	MRPL54	19	3765311	Missense_Mutation	SNP	A	TCGA-CZ-5453-01A-01D-1501-10		3765311	55363672	74	33510											
SMARCA4	6597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	11113809	11113809	+	Silent	SNP	G	G	T	rs187681043	by1000genomes;alternate_allele	TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	11113809	G	T	11113809	2	4	569	1	0	0	0	0	0	0	0	1	14783	1335	47	4		4	SMARCA4	19	11113809	Silent	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	7348498	11113809	48015174	75	33511											
BRD4	23476	hgsc.bcm.edu;ucsc.edu	37	19	15376312	15376314	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	GAC	GAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	15376314	GAC	-	15376312	7	5	569	1	0	1	0	1	0	0	0	0	1506	1161	41	0	3465	0	BRD4	19	15376312	In_Frame_Del	DEL	GAC	TCGA-CZ-5453-01A-01D-1501-10	4262503	15376312	43752671	76	33512	433	2									
BRD4	23476	hgsc.bcm.edu	37	19	15376316	15376316	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	15376316	A	T	15376316	3	4	569	1	0	0	0	0	1	0	0	0	1506	333	12	5	3469	5	BRD4	19	15376316	Missense_Mutation	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	4	15376316	43752667	77	33513	433	2									
OR10H3	26532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15852604	15852604	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	15852604	C	T	15852604	2	4	569	1	0	0	0	0	0	0	0	1	10914	477	17	2		2	OR10H3	19	15852604	Silent	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	476288	15852604	43276379	78	33514											
OCEL1	79629	broad.mit.edu;hgsc.bcm.edu	37	19	17338790	17338790	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	17338790	C	G	17338790	3	3	569	1	0	0	0	0	1	0	0	0	10823	796	28	4	608	4	OCEL1	19	17338790	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	1486186	17338790	41790193	79	33515											
PDCD2L	84306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	34904640	34904640	+	Splice_Site	SNP	A	A	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	34904640	A	C	34904640	5	2	569	1	0	0	0	0	0	0	1	0	11627	434	15	5	703	5	PDCD2L	19	34904640	Splice_Site	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	17565850	34904640	24224343	80	33516											
FOSB	2354	broad.mit.edu	37	19	45974531	45974531	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	45974531	A	A	45974531	3	1	569	1	0	0	0	0	1	0	0	0	5993	1116	39	1	537	1	FOSB	19	45974531	Missense_Mutation	SNP	G	TCGA-CZ-5453-01A-01D-1501-10	11069891	45974531	13154452	81	33517											
CCDC9	26093	broad.mit.edu	37	19	47763878	47763878	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	47763878	-	-	47763878	7	5	569	1	0	1	0	1	0	0	0	0	2869	1348	47	0	258	0	CCDC9	19	47763878	Frame_Shift_Del	DEL	G	TCGA-CZ-5453-01A-01D-1501-10	1789347	47763878	11365105	82	33518											
TNNT1	7138	broad.mit.edu;hgsc.bcm.edu	37	19	55645562	55645562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	55645562	C	G	55645562	3	3	569	1	0	0	0	0	1	0	0	0	16342	710	25	4	226	4	TNNT1	19	55645562	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	7881684	55645562	3483421	83	33519											
KRTAP10-10	353333	hgsc.bcm.edu	37	21	46057625	46057625	+	Silent	SNP	T	T	C	rs55677560	bycluster	TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	46057625	T	C	46057625	2	2	569	1	0	0	0	0	0	0	0	1	8513	1567	55	3		3	KRTAP10-10	21	46057625	Silent	SNP	T	TCGA-CZ-5453-01A-01D-1501-10		46057625	2072270	84	33520											
POTEH	23784	hgsc.bcm.edu	37	22	16287868	16287869	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	C	16287869	-	C	16287868	7	5	569	1	0	1	1	0	0	0	0	0	12274	30	2	0	1659	0	POTEH	22	16287868	Frame_Shift_Ins	INS	-	TCGA-CZ-5453-01A-01D-1501-10		16287868	35016698	85	33521											
SLC5A4	6527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	32633231	32633231	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	32633231	C	G	32633231	3	3	569	1	0	0	0	0	1	0	0	0	14680	608	21	4	1351	4	SLC5A4	22	32633231	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	16345363	32633231	18671335	86	33522											
BRD1	23774	broad.mit.edu;hgsc.bcm.edu	37	22	50187904	50187904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	T	50187904	C	T	50187904	3	4	569	1	0	0	0	0	1	0	0	0	1503	623	22	2	1067	2	BRD1	22	50187904	Missense_Mutation	SNP	C	TCGA-CZ-5453-01A-01D-1501-10	17554673	50187904	1116662	87	33523											
MID1	4281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	10427708	10427708	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	10427708	C	-	10427708	7	5	569	1	0	1	0	1	0	0	0	0	9583	796	28	0	590	0	MID1	23	10427708	Frame_Shift_Del	DEL	C	TCGA-CZ-5453-01A-01D-1501-10		10427708	144842852	88	33524											
ZMAT1	84460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101138798	101138799	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	101138799	TG	-	101138798	7	5	569	1	0	1	0	1	0	0	0	0	17703	1464	51	0	319	0	ZMAT1	23	101138798	Frame_Shift_Del	DEL	TG	TCGA-CZ-5453-01A-01D-1501-10	90711090	101138798	54131762	89	33525	434	2									
ZMAT1	84460	broad.mit.edu;hgsc.bcm.edu	37	X	101138801	101138810	+	Frame_Shift_Del	DEL	CCTGCTTGAT	CCTGCTTGAT	-	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	CCTGCTTGAT	CCTGCTTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	-	101138810	CCTGCTTGAT	-	101138801	7	5	569	1	0	1	0	1	0	0	0	0	17703	507	18	0	322	0	ZMAT1	23	101138801	Frame_Shift_Del	DEL	CCTGCTTGAT	TCGA-CZ-5453-01A-01D-1501-10	3	101138801	54131759	90	33526	434	2									
MAP7D3	79649	hgsc.bcm.edu	37	X	135328306	135328306	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	A	135328306	T	A	135328306	2	1	569	1	0	0	0	0	0	0	0	1	9276	1768	61	5		5	MAP7D3	23	135328306	Silent	SNP	T	TCGA-CZ-5453-01A-01D-1501-10	34189505	135328306	19942254	91	33527											
RENBP	5973	broad.mit.edu;hgsc.bcm.edu	37	X	153205589	153205589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5453-01A-01D-1501-10	TCGA-CZ-5453-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	605079f6-2d6e-4c38-a214-b4c8875dd166	7f87fb18-2e76-4208-b76d-a3990c782aeb	G	153205589	A	G	153205589	3	3	569	1	0	0	0	0	1	0	0	0	13238	304	11	3	252	3	RENBP	23	153205589	Missense_Mutation	SNP	A	TCGA-CZ-5453-01A-01D-1501-10	17877283	153205589	2064971	92	33528											
GTDC1	79712	hgsc.bcm.edu;ucsc.edu	37	2	144899563	144899564	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	-	144899564	GA	-	144899563	7	5	570	1	0	1	0	1	0	0	0	0	6858	1174	41	0	997	0	GTDC1	2	144899563	Frame_Shift_Del	DEL	GA	TCGA-CZ-5454-01A-01D-1501-10		144899563	98299810	1	33529											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52696199	52696199	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	52696199	C	A	52696199	4	1	570	1	0	0	0	0	0	1	0	0	11498	893	31	4	4530	4	PBRM1	3	52696199	Nonsense_Mutation	SNP	C	TCGA-CZ-5454-01A-01D-1501-10		52696199	145326231	2	33530											
NR1I2	8856	broad.mit.edu;hgsc.bcm.edu	37	3	119528965	119528965	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	119528965	G	A	119528965	2	1	570	1	0	0	0	0	0	0	0	1	10627	933	33	2		2	NR1I2	3	119528965	Silent	SNP	G	TCGA-CZ-5454-01A-01D-1501-10	66832766	119528965	78493465	3	33531											
LMLN	89782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	197748373	197748373	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	197748373	C	A	197748373	2	1	570	1	0	0	0	0	0	0	0	1	8854	639	23	4		4	LMLN	3	197748373	Silent	SNP	C	TCGA-CZ-5454-01A-01D-1501-10	78219408	197748373	274057	4	33532											
RFC1	5981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	39297338	39297338	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	T	39297338	C	T	39297338	2	4	570	1	0	0	0	0	0	0	0	1	13257	494	18	2		2	RFC1	4	39297338	Silent	SNP	C	TCGA-CZ-5454-01A-01D-1501-10		39297338	151856938	5	33533											
GALNT7	51809	broad.mit.edu;ucsc.edu	37	4	174216550	174216550	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	G	174216550	G	G	174216550	3	3	570	1	0	0	0	0	1	0	0	0	6225	159	6	3	772	3	GALNT7	4	174216550	Missense_Mutation	SNP	A	TCGA-CZ-5454-01A-01D-1501-10	134919212	174216550	16937726	6	33534											
TTC37	9652	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	94876456	94876456	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	G	94876456	T	G	94876456	2	3	570	1	0	0	0	0	0	0	0	1	16717	1559	54	5		5	TTC37	5	94876456	Silent	SNP	T	TCGA-CZ-5454-01A-01D-1501-10		94876456	86038804	7	33535											
TRAF3IP2	10758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	111913024	111913024	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	111913024	T	A	111913024	3	1	570	1	0	0	0	0	1	0	0	0	16453	1551	54	5	1463	5	TRAF3IP2	6	111913024	Missense_Mutation	SNP	T	TCGA-CZ-5454-01A-01D-1501-10		111913024	59202043	8	33536											
ARG1	383	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	131904255	131904256	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	T	131904256	-	T	131904255	7	5	570	1	0	1	1	0	0	0	0	0	857	564	20	0	638	0	ARG1	6	131904255	Frame_Shift_Ins	INS	-	TCGA-CZ-5454-01A-01D-1501-10	19991231	131904255	39210812	9	33537											
GPNMB	10457	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	23309735	23309735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	T	23309735	C	T	23309735	3	4	570	1	0	0	0	0	1	0	0	0	6627	507	18	2	1440	2	GPNMB	7	23309735	Missense_Mutation	SNP	C	TCGA-CZ-5454-01A-01D-1501-10		23309735	135828928	10	33538											
YTHDF3	253943	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	64099319	64099319	+	Missense_Mutation	SNP	G	G	A	rs61745071		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	64099319	G	A	64099319	3	1	570	1	0	0	0	0	1	0	0	0	17512	1058	37	1	763	1	YTHDF3	8	64099319	Missense_Mutation	SNP	G	TCGA-CZ-5454-01A-01D-1501-10		64099319	82264703	11	33539											
STMN2	11075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	80549106	80549106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	80549106	G	A	80549106	3	1	570	1	0	0	0	0	1	0	0	0	15321	1087	38	1	95	1	STMN2	8	80549106	Missense_Mutation	SNP	G	TCGA-CZ-5454-01A-01D-1501-10	16449787	80549106	65814916	12	33540											
RIPK2	8767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	90796294	90796294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	T	90796294	G	T	90796294	3	4	570	1	0	0	0	0	1	0	0	0	13394	1029	36	4	986	4	RIPK2	8	90796294	Missense_Mutation	SNP	G	TCGA-CZ-5454-01A-01D-1501-10	10247188	90796294	55567728	13	33541											
SEC61B	10952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	101984847	101984847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	C	101984847	G	C	101984847	3	2	570	1	0	0	0	0	1	0	0	0	14015	1203	42	4	29	4	SEC61B	9	101984847	Missense_Mutation	SNP	G	TCGA-CZ-5454-01A-01D-1501-10		101984847	39228584	14	33542											
LRP4	4038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	46895081	46895081	+	Silent	SNP	G	G	A	rs17848229		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	46895081	G	A	46895081	2	1	570	1	0	0	0	0	0	0	0	1	8966	1136	40	1		1	LRP4	11	46895081	Silent	SNP	G	TCGA-CZ-5454-01A-01D-1501-10		46895081	88111435	15	33543											
LRTOMT	220074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	71816983	71816983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	71816983	G	A	71816983	3	1	570	1	0	0	0	0	1	0	0	0	9053	1217	42	2	696	2	LRTOMT	11	71816983	Missense_Mutation	SNP	G	TCGA-CZ-5454-01A-01D-1501-10	24921902	71816983	63189533	16	33544											
PAPOLA	10914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	97009231	97009231	+	Splice_Site	SNP	G	G	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	97009231	G	A	97009231	5	1	570	1	0	0	0	0	0	0	1	0	11436	1043	36	2	1344	2	PAPOLA	14	97009231	Splice_Site	SNP	G	TCGA-CZ-5454-01A-01D-1501-10		97009231	10340309	17	33545											
C16orf73	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1884331	1884331	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	1884331	T	A	1884331	3	1	570	1	0	0	0	0	1	0	0	0	1834	1493	52	5	77	5	C16orf73	16	1884331	Missense_Mutation	SNP	T	TCGA-CZ-5454-01A-01D-1501-10		1884331	88470422	18	33546											
ATAD5	79915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	29182285	29182285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	T	29182285	G	T	29182285	3	4	570	1	0	0	0	0	1	0	0	0	1076	1377	48	4	2601	4	ATAD5	17	29182285	Missense_Mutation	SNP	G	TCGA-CZ-5454-01A-01D-1501-10		29182285	52012925	19	33547											
CDK12	51755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37682372	37682372	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	-	37682372	T	-	37682372	7	5	570	1	0	1	0	1	0	0	0	0	3130	1435	50	0	3613	0	CDK12	17	37682372	Frame_Shift_Del	DEL	T	TCGA-CZ-5454-01A-01D-1501-10	8500087	37682372	43512838	20	33548											
PSMD3	5709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38153787	38153787	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	C	38153787	G	C	38153787	3	2	570	1	0	0	0	0	1	0	0	0	12709	1175	41	4	1604	4	PSMD3	17	38153787	Missense_Mutation	SNP	G	TCGA-CZ-5454-01A-01D-1501-10	471415	38153787	43041423	21	33549											
RNF43	54894	broad.mit.edu;ucsc.edu	37	17	56440700	56440700	+	Missense_Mutation	SNP	A	G	G	rs145164323	alternate_allele	TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	G	56440700	G	G	56440700	3	3	570	1	0	0	0	0	1	0	0	0	13508	217	8	3	1857	3	RNF43	17	56440700	Missense_Mutation	SNP	A	TCGA-CZ-5454-01A-01D-1501-10	18286913	56440700	24754510	22	33550											
DDX42	11325	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61890626	61890626	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	T	61890626	A	T	61890626	3	4	570	1	0	0	0	0	1	0	0	0	4364	362	13	5	1768	5	DDX42	17	61890626	Missense_Mutation	SNP	A	TCGA-CZ-5454-01A-01D-1501-10	5449926	61890626	19304584	23	33551											
NLRP9	338321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56243947	56243947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	56243947	C	A	56243947	3	1	570	1	0	0	0	0	1	0	0	0	10491	681	24	4	1757	4	NLRP9	19	56243947	Missense_Mutation	SNP	C	TCGA-CZ-5454-01A-01D-1501-10		56243947	2885036	24	33552											
GGT7	2686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33437795	33437795	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	T	33437795	C	T	33437795	2	4	570	1	0	0	0	0	0	0	0	1	6371	639	23	1		1	GGT7	20	33437795	Silent	SNP	C	TCGA-CZ-5454-01A-01D-1501-10		33437795	29587725	25	33553											
SLC2A4RG	56731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62373331	62373331	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	62373331	T	A	62373331	2	1	570	1	0	0	0	0	0	0	0	1	14560	1538	54	5		5	SLC2A4RG	20	62373331	Silent	SNP	T	TCGA-CZ-5454-01A-01D-1501-10	28935536	62373331	652189	26	33554											
RPL3	6122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	39713525	39713525	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5454-01A-01D-1501-10	TCGA-CZ-5454-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d9fd1928-7b7d-4147-aeff-1618393ba26c	46d95289-69d8-4437-b2f3-5a3e5ccf7ef6	A	39713525	G	A	39713525	2	1	570	1	0	0	0	0	0	0	0	1	13592	1281	45	2		2	RPL3	22	39713525	Silent	SNP	G	TCGA-CZ-5454-01A-01D-1501-10		39713525	11591041	27	33555											
AIM1L	55057	hgsc.bcm.edu;ucsc.edu	37	1	26650663	26650663	+	Missense_Mutation	SNP	C	C	T	rs189284478	by1000genomes	TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	26650663	C	T	26650663	3	4	571	1	0	0	0	0	1	0	0	0	431	855	30	2	280	2	AIM1L	1	26650663	Missense_Mutation	SNP	C	TCGA-CZ-5455-01A-01D-1501-10		26650663	222599958	1	33556											
MYBPHL	343263	hgsc.bcm.edu;ucsc.edu	37	1	109838957	109838957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	G	109838957	C	G	109838957	3	3	571	1	0	0	0	0	1	0	0	0	10022	913	32	4	310	4	MYBPHL	1	109838957	Missense_Mutation	SNP	C	TCGA-CZ-5455-01A-01D-1501-10	83188294	109838957	139411664	2	33557											
ADCY10	55811	hgsc.bcm.edu;ucsc.edu	37	1	167829063	167829063	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	-	167829063	A	-	167829063	7	5	571	1	0	1	0	1	0	0	0	0	293	359	13	0	3026	0	ADCY10	1	167829063	Frame_Shift_Del	DEL	A	TCGA-CZ-5455-01A-01D-1501-10	57990106	167829063	81421558	3	33558											
CR2	1380	hgsc.bcm.edu;ucsc.edu	37	1	207651381	207651381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	A	207651381	C	A	207651381	3	1	571	1	0	0	0	0	1	0	0	0	3844	506	18	4	3116	4	CR2	1	207651381	Missense_Mutation	SNP	C	TCGA-CZ-5455-01A-01D-1501-10	39822318	207651381	41599240	4	33559											
ERMN	57471	hgsc.bcm.edu;ucsc.edu	37	2	158178112	158178112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	158178112	C	T	158178112	3	4	571	1	0	0	0	0	1	0	0	0	5237	826	29	2	332	2	ERMN	2	158178112	Missense_Mutation	SNP	C	TCGA-CZ-5455-01A-01D-1501-10		158178112	85021261	5	33560											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52637555	52637555	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	A	52637555	G	A	52637555	4	1	571	1	0	0	0	0	0	1	0	0	11498	1153	40	1	2195	1	PBRM1	3	52637555	Nonsense_Mutation	SNP	G	TCGA-CZ-5455-01A-01D-1501-10		52637555	145384875	6	33561											
TBCK	93627	hgsc.bcm.edu	37	4	107168369	107168370	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	G	107168370	-	G	107168369	7	5	571	1	0	1	1	0	0	0	0	0	15648	175	7	0	1891	0	TBCK	4	107168369	Frame_Shift_Ins	INS	-	TCGA-CZ-5455-01A-01D-1501-10		107168369	83985907	7	33562											
ODZ3	0	hgsc.bcm.edu;ucsc.edu	37	4	183714250	183714250	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	183714250	A	T	183714250	3	4	571	1	0	0	0	0	1	0	0	0	10843	391	14	5	6523	5	ODZ3	4	183714250	Missense_Mutation	SNP	A	TCGA-CZ-5455-01A-01D-1501-10	76545881	183714250	7440026	8	33563											
SLC22A4	6583	hgsc.bcm.edu;ucsc.edu	37	5	131662990	131662990	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	C	131662990	G	C	131662990	3	2	571	1	0	0	0	0	1	0	0	0	14469	1058	37	4	863	4	SLC22A4	5	131662990	Missense_Mutation	SNP	G	TCGA-CZ-5455-01A-01D-1501-10		131662990	49252270	9	33564											
PCDHGB2	56103	hgsc.bcm.edu;ucsc.edu	37	5	140741742	140741742	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	A	140741742	G	A	140741742	2	1	571	1	0	0	0	0	0	0	0	1	11570	962	34	2		2	PCDHGB2	5	140741742	Silent	SNP	G	TCGA-CZ-5455-01A-01D-1501-10	9078752	140741742	40173518	10	33565											
MYLK4	340156	hgsc.bcm.edu;ucsc.edu	37	6	2689126	2689126	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	2689126	G	T	2689126	2	4	571	1	0	0	0	0	0	0	0	1	10066	1277	45	4		4	MYLK4	6	2689126	Silent	SNP	G	TCGA-CZ-5455-01A-01D-1501-10		2689126	168425941	11	33566											
XPO5	57510	hgsc.bcm.edu;ucsc.edu	37	6	43492326	43492326	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	C	43492326	T	C	43492326	2	2	571	1	0	0	0	0	0	0	0	1	17459	1838	64	3		3	XPO5	6	43492326	Silent	SNP	T	TCGA-CZ-5455-01A-01D-1501-10	40803200	43492326	127622741	12	33567											
PDCD2	5134	hgsc.bcm.edu;ucsc.edu	37	6	170892196	170892196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	C	170892196	T	C	170892196	3	2	571	1	0	0	0	0	1	0	0	0	11626	1406	49	3	472	3	PDCD2	6	170892196	Missense_Mutation	SNP	T	TCGA-CZ-5455-01A-01D-1501-10	127399870	170892196	222871	13	33568											
PION	54103	hgsc.bcm.edu;ucsc.edu	37	7	76959608	76959608	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	G	76959608	T	G	76959608	3	3	571	1	0	0	0	0	1	0	0	0	11941	1696	59	5	990	5	PION	7	76959608	Missense_Mutation	SNP	T	TCGA-CZ-5455-01A-01D-1501-10		76959608	82179055	14	33569											
PON3	5446	hgsc.bcm.edu;ucsc.edu	37	7	94991745	94991745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	C	94991745	T	C	94991745	3	2	571	1	0	0	0	0	1	0	0	0	12257	1464	51	3	237	3	PON3	7	94991745	Missense_Mutation	SNP	T	TCGA-CZ-5455-01A-01D-1501-10	18032137	94991745	64146918	15	33570											
CHCHD3	54927	hgsc.bcm.edu	37	7	132470404	132470404	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	A	132470404	T	A	132470404	2	1	571	1	0	0	0	0	0	0	0	1	3319	1538	54	5		5	CHCHD3	7	132470404	Silent	SNP	T	TCGA-CZ-5455-01A-01D-1501-10	37478659	132470404	26668259	16	33571											
PEBP4	157310	hgsc.bcm.edu;ucsc.edu	37	8	22777758	22777758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	C	22777758	T	C	22777758	3	2	571	1	0	0	0	0	1	0	0	0	11721	1725	60	3	506	3	PEBP4	8	22777758	Missense_Mutation	SNP	T	TCGA-CZ-5455-01A-01D-1501-10		22777758	123586264	17	33572											
HOOK3	84376	hgsc.bcm.edu;ucsc.edu	37	8	42841800	42841800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	G	42841800	A	G	42841800	3	3	571	1	0	0	0	0	1	0	0	0	7291	304	11	3	1452	3	HOOK3	8	42841800	Missense_Mutation	SNP	A	TCGA-CZ-5455-01A-01D-1501-10	20064042	42841800	103522222	18	33573											
UBE2D1	7321	hgsc.bcm.edu;ucsc.edu	37	10	60128517	60128517	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	C	60128517	G	C	60128517	3	2	571	1	0	0	0	0	1	0	0	0	16860	1319	46	4	462	4	UBE2D1	10	60128517	Missense_Mutation	SNP	G	TCGA-CZ-5455-01A-01D-1501-10		60128517	75406230	19	33574											
ANK3	288	hgsc.bcm.edu;ucsc.edu	37	10	61835851	61835851	+	Silent	SNP	A	A	T	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	61835851	A	T	61835851	2	4	571	1	0	0	0	0	0	0	0	1	622	175	7	5		5	ANK3	10	61835851	Silent	SNP	A	TCGA-CZ-5455-01A-01D-1501-10	1707334	61835851	73698896	20	33575											
OR5A2	219981	hgsc.bcm.edu;ucsc.edu	37	11	59190140	59190140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	G	59190140	A	G	59190140	3	3	571	1	0	0	0	0	1	0	0	0	11147	43	2	3	689	3	OR5A2	11	59190140	Missense_Mutation	SNP	A	TCGA-CZ-5455-01A-01D-1501-10		59190140	75816376	21	33576											
CORO1B	57175	hgsc.bcm.edu;ucsc.edu	37	11	67207622	67207622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	67207622	C	T	67207622	3	4	571	1	0	0	0	0	1	0	0	0	3756	652	23	1	511	1	CORO1B	11	67207622	Missense_Mutation	SNP	C	TCGA-CZ-5455-01A-01D-1501-10	8017482	67207622	67798894	22	33577											
MAML2	84441	hgsc.bcm.edu	37	11	95825401	95825401	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	95825401	C	T	95825401	2	4	571	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825401	Silent	SNP	C	TCGA-CZ-5455-01A-01D-1501-10	28617779	95825401	39181115	23	33578											
VSIG10	54621	hgsc.bcm.edu;ucsc.edu	37	12	118506261	118506261	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	118506261	C	T	118506261	2	4	571	1	0	0	0	0	0	0	0	1	17235	796	28	2		2	VSIG10	12	118506261	Silent	SNP	C	TCGA-CZ-5455-01A-01D-1501-10		118506261	15345634	24	33579											
SYNE2	23224	hgsc.bcm.edu;ucsc.edu	37	14	64556348	64556348	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	G	64556348	C	G	64556348	3	3	571	1	0	0	0	0	1	0	0	0	15458	816	29	4	11957	4	SYNE2	14	64556348	Missense_Mutation	SNP	C	TCGA-CZ-5455-01A-01D-1501-10		64556348	42793192	25	33580											
FBN1	2200	hgsc.bcm.edu;ucsc.edu	37	15	48725074	48725074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	48725074	C	T	48725074	3	4	571	1	0	0	0	0	1	0	0	0	5709	681	24	2	1935	2	FBN1	15	48725074	Missense_Mutation	SNP	C	TCGA-CZ-5455-01A-01D-1501-10		48725074	53806318	26	33581											
PTRF	284119	hgsc.bcm.edu;ucsc.edu	37	17	40556892	40556892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	A	40556892	C	A	40556892	3	1	571	1	0	0	0	0	1	0	0	0	12828	768	27	4	190	4	PTRF	17	40556892	Missense_Mutation	SNP	C	TCGA-CZ-5455-01A-01D-1501-10		40556892	40638318	27	33582											
TRIM37	4591	hgsc.bcm.edu;ucsc.edu	37	17	57078981	57078981	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	A	57078981	G	A	57078981	2	1	571	1	0	0	0	0	0	0	0	1	16523	1277	45	2		2	TRIM37	17	57078981	Silent	SNP	G	TCGA-CZ-5455-01A-01D-1501-10	16522089	57078981	24116229	28	33583											
ITGB4	3691	hgsc.bcm.edu;ucsc.edu	37	17	73752790	73752790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	A	73752790	G	A	73752790	3	1	571	1	0	0	0	0	1	0	0	0	7904	1087	38	1	5208	1	ITGB4	17	73752790	Missense_Mutation	SNP	G	TCGA-CZ-5455-01A-01D-1501-10	16673809	73752790	7442420	29	33584											
LIPG	9388	hgsc.bcm.edu;ucsc.edu	37	18	47095827	47095827	+	Silent	SNP	C	C	T	rs146146617		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	47095827	C	T	47095827	2	4	571	1	0	0	0	0	0	0	0	1	8830	871	31	1		1	LIPG	18	47095827	Silent	SNP	C	TCGA-CZ-5455-01A-01D-1501-10		47095827	30981421	30	33585											
ATP7A	538	hgsc.bcm.edu	37	X	77254041	77254041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5455-01A-01D-1501-10	TCGA-CZ-5455-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7066c3fa-4e8c-460c-ba68-a3508fdeb315	d3da7fdd-73e5-49ee-95fc-4d5ae03f0e84	T	77254041	A	T	77254041	3	4	571	1	0	0	0	0	1	0	0	0	1190	101	4	5	1417	5	ATP7A	23	77254041	Missense_Mutation	SNP	A	TCGA-CZ-5455-01A-01D-1501-10		77254041	78016519	31	33586											
VHL	7428	hgsc.bcm.edu	37	3	10183725	10183725	+	Nonsense_Mutation	SNP	C	C	A	rs5030826		TCGA-CZ-5455-01A-01W-1528-10	TCGA-CZ-5455-11A-01W-1528-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	18d638e2-3061-4ea5-8ad5-93559d1eabb0	cd5529f7-7518-4681-8443-92e6d3d8ad6f	A	10183725	C	A	10183725	4	1	572	1	0	0	0	0	0	1	0	0	17174	893	31	4	196	4	VHL	3	10183725	Nonsense_Mutation	SNP	C	TCGA-CZ-5455-01A-01W-1528-10		10183725	187838705	1	33587											
CAMTA1	23261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	7797034	7797034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	7797034	C	T	7797034	3	4	573	1	0	0	0	0	1	0	0	0	2615	623	22	2	3361	2	CAMTA1	1	7797034	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10		7797034	241453587	1	33588											
CASZ1	54897	broad.mit.edu	37	1	10711096	10711097	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	10711097	G	G	10711096	7	5	573	1	0	1	1	0	0	0	0	0	2687	639	23	0	2605	0	CASZ1	1	10711096	Frame_Shift_Ins	INS	-	TCGA-CZ-5456-01A-01D-1501-10	2914062	10711096	238539525	2	33589											
TMEM59	9528	broad.mit.edu;ucsc.edu	37	1	54509109	54509109	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	54509109	A	A	54509109	2	1	573	1	0	0	0	0	0	0	0	1	16197	962	34	2		2	TMEM59	1	54509109	Silent	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	43798013	54509109	194741512	3	33590	435	2									
TMEM59	9528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	54509110	54509110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	54509110	C	T	54509110	3	4	573	1	0	0	0	0	1	0	0	0	16197	797	28	2	512	2	TMEM59	1	54509110	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	1	54509110	194741511	4	33591	435	2									
NOTCH2	4853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	120458045	120458045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	120458045	A	G	120458045	3	3	573	1	0	0	0	0	1	0	0	0	10555	246	9	3	119	3	NOTCH2	1	120458045	Missense_Mutation	SNP	A	TCGA-CZ-5456-01A-01D-1501-10	65948935	120458045	128792576	5	33592											
ANKRD35	148741	broad.mit.edu;ucsc.edu	37	1	145558859	145558859	+	Missense_Mutation	SNP	G	A	A	rs150752253	byfrequency	TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	145558859	A	A	145558859	3	1	573	1	0	0	0	0	1	0	0	0	664	1087	38	1	504	1	ANKRD35	1	145558859	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	25100814	145558859	103691762	6	33593											
HRNR	388697	broad.mit.edu	37	1	152188024	152188024	+	Silent	SNP	C	G	G	rs142170860	alternate_allele	TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	152188024	G	G	152188024	2	3	573	1	0	0	0	0	0	0	0	1	7366	871	31	4		4	HRNR	1	152188024	Silent	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	6629165	152188024	97062597	7	33594											
FLG	2312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152283596	152283596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	152283596	G	T	152283596	3	4	573	1	0	0	0	0	1	0	0	0	5929	1386	48	4	8423	4	FLG	1	152283596	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	95572	152283596	96967025	8	33595											
ATP1A2	477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160091025	160091025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	160091025	A	T	160091025	3	4	573	1	0	0	0	0	1	0	0	0	1129	130	5	5	171	5	ATP1A2	1	160091025	Missense_Mutation	SNP	A	TCGA-CZ-5456-01A-01D-1501-10	7807429	160091025	89159596	9	33596											
SELE	6401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169701065	169701065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	169701065	G	A	169701065	3	1	573	1	0	0	0	0	1	0	0	0	14026	1174	41	2	1432	2	SELE	1	169701065	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	9610040	169701065	79549556	10	33597											
PRRX1	5396	broad.mit.edu	37	1	170695367	170695367	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	170695367	C	C	170695367	3	2	573	1	0	0	0	0	1	0	0	0	12622	1725	60	3	434	3	PRRX1	1	170695367	Missense_Mutation	SNP	T	TCGA-CZ-5456-01A-01D-1501-10	994302	170695367	78555254	11	33598											
NFE2L2	4780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	178098960	178098960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	178098960	C	G	178098960	3	3	573	1	0	0	0	0	1	0	0	0	10375	913	32	4	1748	4	NFE2L2	2	178098960	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10		178098960	65100413	12	33599											
PDE11A	50940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	178936671	178936671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	178936671	G	A	178936671	3	1	573	1	0	0	0	0	1	0	0	0	11638	1232	43	2	2387	2	PDE11A	2	178936671	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	837711	178936671	64262702	13	33600											
KIF1A	547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	241724433	241724433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	241724433	G	C	241724433	3	2	573	1	0	0	0	0	1	0	0	0	8290	1136	40	4	4543	4	KIF1A	2	241724433	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	62787762	241724433	1474940	14	33601											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52588818	52588818	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	-	52588818	G	-	52588818	7	5	573	1	0	1	0	1	0	0	0	0	11498	1328	46	0	554	0	PBRM1	3	52588818	Frame_Shift_Del	DEL	G	TCGA-CZ-5456-01A-01D-1501-10		52588818	145433612	15	33602											
CACNA1D	776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	53777118	53777118	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	53777118	G	T	53777118	2	4	573	1	0	0	0	0	0	0	0	1	2543	1219	43	4		4	CACNA1D	3	53777118	Silent	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	1188300	53777118	144245312	16	33603											
RASA2	5922	broad.mit.edu	37	3	141295907	141295907	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	141295907	A	A	141295907	3	1	573	1	0	0	0	0	1	0	0	0	13074	1145	40	1	1607	1	RASA2	3	141295907	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	87518789	141295907	56726523	17	33604											
KIAA1530	0	broad.mit.edu	37	4	1343562	1343562	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	1343562	A	A	1343562	3	1	573	1	0	0	0	0	1	0	0	0	8248	1145	40	1	355	1	KIAA1530	4	1343562	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10		1343562	189810714	18	33605											
SLIT2	9353	broad.mit.edu;ucsc.edu	37	4	20512749	20512749	+	Silent	SNP	T	C	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	20512749	C	C	20512749	2	2	573	1	0	0	0	0	0	0	0	1	14753	1538	54	3		3	SLIT2	4	20512749	Silent	SNP	T	TCGA-CZ-5456-01A-01D-1501-10	19169187	20512749	170641527	19	33606											
SRP72	6731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	57349375	57349375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	57349375	C	T	57349375	3	4	573	1	0	0	0	0	1	0	0	0	15169	855	30	2	930	2	SRP72	4	57349375	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	36836626	57349375	133804901	20	33607											
WDFY3	23001	hgsc.bcm.edu;ucsc.edu	37	4	85738690	85738690	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	-	85738690	T	-	85738690	7	5	573	1	0	1	0	1	0	0	0	0	17282	1609	56	0	9105	0	WDFY3	4	85738690	Frame_Shift_Del	DEL	T	TCGA-CZ-5456-01A-01D-1501-10	28389315	85738690	105415586	21	33608											
SH3RF1	57630	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	170190302	170190302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	170190302	G	A	170190302	3	1	573	1	0	0	0	0	1	0	0	0	14271	971	34	2	2648	2	SH3RF1	4	170190302	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	84451612	170190302	20963974	22	33609											
GPM6A	2823	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	176556193	176556193	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	-	176556193	C	-	176556193	7	5	573	1	0	1	0	1	0	0	0	0	6622	507	18	0	140	0	GPM6A	4	176556193	Frame_Shift_Del	DEL	C	TCGA-CZ-5456-01A-01D-1501-10	6365891	176556193	14598083	23	33610											
PCDHB9	56127	broad.mit.edu;hgsc.bcm.edu	37	5	140569080	140569080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	140569080	G	T	140569080	3	4	573	1	0	0	0	0	1	0	0	0	11556	1261	44	4	2190	4	PCDHB9	5	140569080	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10		140569080	40346180	24	33611											
CCDC99	0	broad.mit.edu;hgsc.bcm.edu	37	5	169026150	169026150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	169026150	A	C	169026150	3	2	573	1	0	0	0	0	1	0	0	0	2878	98	4	5	1345	5	CCDC99	5	169026150	Missense_Mutation	SNP	A	TCGA-CZ-5456-01A-01D-1501-10	28457070	169026150	11889110	25	33612											
MAML1	9794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179201812	179201812	+	Silent	SNP	C	C	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	179201812	C	G	179201812	2	3	573	1	0	0	0	0	0	0	0	1	9212	610	22	4		4	MAML1	5	179201812	Silent	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	10175662	179201812	1713448	26	33613											
CD2AP	23607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	47567071	47567071	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	47567071	T	A	47567071	3	1	573	1	0	0	0	0	1	0	0	0	2996	1493	52	5	1359	5	CD2AP	6	47567071	Missense_Mutation	SNP	T	TCGA-CZ-5456-01A-01D-1501-10		47567071	123547996	27	33614											
COL1A2	1278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	94051214	94051214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	94051214	A	G	94051214	3	3	573	1	0	0	0	0	1	0	0	0	3680	449	16	3	2507	3	COL1A2	7	94051214	Missense_Mutation	SNP	A	TCGA-CZ-5456-01A-01D-1501-10		94051214	65087449	28	33615											
POT1	25913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	124493109	124493109	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	124493109	C	T	124493109	2	4	573	1	0	0	0	0	0	0	0	1	12267	564	20	2		2	POT1	7	124493109	Silent	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	30441895	124493109	34645554	29	33616											
MKLN1	4289	hgsc.bcm.edu;ucsc.edu	37	7	131122679	131122679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	-	131122679	A	-	131122679	7	5	573	1	0	1	0	1	0	0	0	0	9610	217	8	0	1167	0	MKLN1	7	131122679	Frame_Shift_Del	DEL	A	TCGA-CZ-5456-01A-01D-1501-10	6629570	131122679	28015984	30	33617											
EPHB6	2051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	142563322	142563322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	142563322	G	A	142563322	3	1	573	1	0	0	0	0	1	0	0	0	5180	1145	40	1	1053	1	EPHB6	7	142563322	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	11440643	142563322	16575341	31	33618											
SLC7A2	6542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	17409424	17409424	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	17409424	G	A	17409424	2	1	573	1	0	0	0	0	0	0	0	1	14710	1132	40	1		1	SLC7A2	8	17409424	Silent	SNP	G	TCGA-CZ-5456-01A-01D-1501-10		17409424	128954598	32	33619											
ADRA1A	148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	26722260	26722260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	26722260	G	C	26722260	3	2	573	1	0	0	0	0	1	0	0	0	334	1261	44	4	1472	4	ADRA1A	8	26722260	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	9312836	26722260	119641762	33	33620											
PENK	5179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	57354177	57354177	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	57354177	G	C	57354177	3	2	573	1	0	0	0	0	1	0	0	0	11734	1174	41	4	349	4	PENK	8	57354177	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	30631917	57354177	89009845	34	33621											
CHD7	55636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	61757864	61757864	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	61757864	C	T	61757864	2	4	573	1	0	0	0	0	0	0	0	1	3332	709	25	2		2	CHD7	8	61757864	Silent	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	4403687	61757864	84606158	35	33622											
RRS1	23212	broad.mit.edu;hgsc.bcm.edu	37	8	67342089	67342089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	67342089	G	T	67342089	3	4	573	1	0	0	0	0	1	0	0	0	13705	991	35	4	725	4	RRS1	8	67342089	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	5584225	67342089	79021933	36	33623											
ZNF704	619279	hgsc.bcm.edu;ucsc.edu	37	8	81577290	81577298	+	In_Frame_Del	DEL	ATCACTGTA	ATCACTGTA	-	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	ATCACTGTA	ATCACTGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	-	81577298	ATCACTGTA	-	81577290	7	5	573	1	0	1	0	1	0	0	0	0	18119	214	8	0	567	0	ZNF704	8	81577290	In_Frame_Del	DEL	ATCACTGTA	TCGA-CZ-5456-01A-01D-1501-10	14235201	81577290	64786732	37	33624											
PTPDC1	138639	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	96860800	96860800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	96860800	T	A	96860800	3	1	573	1	0	0	0	0	1	0	0	0	12784	1522	53	5	2054	5	PTPDC1	9	96860800	Missense_Mutation	SNP	T	TCGA-CZ-5456-01A-01D-1501-10		96860800	44352631	38	33625											
SETX	23064	broad.mit.edu;ucsc.edu	37	9	135202159	135202159	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	135202159	A	A	135202159	3	1	573	1	0	0	0	0	1	0	0	0	14154	507	18	4	3275	4	SETX	9	135202159	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	38341359	135202159	6011272	39	33626											
PHYH	5264	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	13325777	13325777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	13325777	G	T	13325777	3	4	573	1	0	0	0	0	1	0	0	0	11871	1252	44	4	287	4	PHYH	10	13325777	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10		13325777	122208970	40	33627											
EPC1	80314	hgsc.bcm.edu;ucsc.edu	37	10	32582523	32582529	+	Frame_Shift_Del	DEL	CTGACCA	CTGACCA	-	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	CTGACCA	CTGACCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	-	32582529	CTGACCA	-	32582523	7	5	573	1	0	1	0	1	0	0	0	0	5162	796	28	0	2106	0	EPC1	10	32582523	Frame_Shift_Del	DEL	CTGACCA	TCGA-CZ-5456-01A-01D-1501-10	19256746	32582523	102952224	41	33628											
B4GALNT4	338707	broad.mit.edu	37	11	379925	379925	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	379925	T	T	379925	3	4	573	1	0	0	0	0	1	0	0	0	1269	768	27	1	2610	1	B4GALNT4	11	379925	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10		379925	134626591	42	33629											
SCUBE2	57758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	9091015	9091015	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	9091015	T	A	9091015	3	1	573	1	0	0	0	0	1	0	0	0	13958	1696	59	5	2617	5	SCUBE2	11	9091015	Missense_Mutation	SNP	T	TCGA-CZ-5456-01A-01D-1501-10	8711090	9091015	125915501	43	33630											
DENND5A	23258	broad.mit.edu;ucsc.edu	37	11	9161237	9161237	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	9161237	G	G	9161237	3	3	573	1	0	0	0	0	1	0	0	0	4438	275	10	3	22	3	DENND5A	11	9161237	Missense_Mutation	SNP	A	TCGA-CZ-5456-01A-01D-1501-10	70222	9161237	125845279	44	33631											
CASP1	834	broad.mit.edu;hgsc.bcm.edu	37	11	104897592	104897592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	104897592	C	A	104897592	3	1	573	1	0	0	0	0	1	0	0	0	2670	826	29	4	129	4	CASP1	11	104897592	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	95736355	104897592	30108924	45	33632											
CSDA	8531	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10854562	10854562	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	10854562	T	A	10854562	3	1	573	1	0	0	0	0	1	0	0	0	3929	1606	56	5	76	5	CSDA	12	10854562	Missense_Mutation	SNP	T	TCGA-CZ-5456-01A-01D-1501-10		10854562	122997333	46	33633											
CLYBL	171425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	100543598	100543598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	100543598	G	A	100543598	3	1	573	1	0	0	0	0	1	0	0	0	3575	1290	45	2	984	2	CLYBL	13	100543598	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10		100543598	14626280	47	33634											
COL4A2	1284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	111144511	111144511	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	111144511	T	C	111144511	2	2	573	1	0	0	0	0	0	0	0	1	3692	1538	54	3		3	COL4A2	13	111144511	Silent	SNP	T	TCGA-CZ-5456-01A-01D-1501-10	10600913	111144511	4025367	48	33635											
CLMN	79789	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	95669872	95669872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	95669872	A	G	95669872	3	3	573	1	0	0	0	0	1	0	0	0	3544	420	15	3	1214	3	CLMN	14	95669872	Missense_Mutation	SNP	A	TCGA-CZ-5456-01A-01D-1501-10		95669872	11679668	49	33636											
MTMR10	54893	broad.mit.edu;ucsc.edu	37	15	31260141	31260141	+	Missense_Mutation	SNP	T	C	C	rs185348229	by1000genomes	TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	31260141	C	C	31260141	3	2	573	1	0	0	0	0	1	0	0	0	9946	1792	62	3	1830	3	MTMR10	15	31260141	Missense_Mutation	SNP	T	TCGA-CZ-5456-01A-01D-1501-10		31260141	71271251	50	33637											
PIF1	80119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65114788	65114788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	65114788	G	A	65114788	3	1	573	1	0	0	0	0	1	0	0	0	11890	1203	42	2	1389	2	PIF1	15	65114788	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	33854647	65114788	37416604	51	33638											
ACSBG1	23205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	78485853	78485853	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	-	78485853	G	-	78485853	7	5	573	1	0	1	0	1	0	0	0	0	173	991	35	0	1556	0	ACSBG1	15	78485853	Frame_Shift_Del	DEL	G	TCGA-CZ-5456-01A-01D-1501-10	13371065	78485853	24045539	52	33639											
ARNT2	9915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	80762712	80762712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	80762712	G	T	80762712	3	4	573	1	0	0	0	0	1	0	0	0	966	1290	45	4	362	4	ARNT2	15	80762712	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	2276859	80762712	21768680	53	33640											
PARN	5073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	14711480	14711480	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	A	14711480	G	A	14711480	4	1	573	1	0	0	0	0	0	1	0	0	11460	1357	47	2	1640	2	PARN	16	14711480	Nonsense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10		14711480	75643273	54	33641											
ZNF688	146542	broad.mit.edu	37	16	30581350	30581351	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	30581351	C	C	30581350	7	5	573	1	0	1	1	0	0	0	0	0	18105	1086	38	0	116	0	ZNF688	16	30581350	Frame_Shift_Ins	INS	-	TCGA-CZ-5456-01A-01D-1501-10	15869870	30581350	59773403	55	33642											
SAFB2	9667	broad.mit.edu;ucsc.edu	37	19	5613494	5613494	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	5613494	T	T	5613494	2	4	573	1	0	0	0	0	0	0	0	1	13820	825	29	2		2	SAFB2	19	5613494	Silent	SNP	C	TCGA-CZ-5456-01A-01D-1501-10		5613494	53515489	56	33643											
COL5A3	50509	broad.mit.edu;hgsc.bcm.edu	37	19	10087919	10087919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	10087919	C	T	10087919	3	4	573	1	0	0	0	0	1	0	0	0	3700	884	31	1	2059	1	COL5A3	19	10087919	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	4474425	10087919	49041064	57	33644											
MRPL4	51073	broad.mit.edu;ucsc.edu	37	19	10370469	10370469	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	10370469	T	T	10370469	3	4	573	1	0	0	0	0	1	0	0	0	9810	1203	42	4	1003	4	MRPL4	19	10370469	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	282550	10370469	48758514	58	33645											
MLL4	9757	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36221724	36221724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	36221724	C	G	36221724	3	3	573	1	0	0	0	0	1	0	0	0	9630	710	25	4	5495	4	MLL4	19	36221724	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	25851255	36221724	22907259	59	33646											
ZNF331	55422	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	54080261	54080261	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	54080261	T	G	54080261	3	3	573	1	0	0	0	0	1	0	0	0	17861	1432	50	5	457	5	ZNF331	19	54080261	Missense_Mutation	SNP	T	TCGA-CZ-5456-01A-01D-1501-10	17858537	54080261	5048722	60	33647											
ZNF805	390980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57752278	57752278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	57752278	G	T	57752278	3	4	573	1	0	0	0	0	1	0	0	0	18184	1174	41	4	21	4	ZNF805	19	57752278	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	3672017	57752278	1376705	61	33648											
DEFB126	81623	hgsc.bcm.edu	37	20	126314	126314	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	G	126314	C	G	126314	3	3	573	1	0	0	0	0	1	0	0	0	4414	623	22	4	323	4	DEFB126	20	126314	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10		126314	62899206	62	33649											
PCK1	5105	broad.mit.edu	37	20	56140965	56140967	+	3'UTR	DEL	ATC	-	-	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	ATC	ATC	ATC	-	ATC	ATC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	-	56140967	-	-	56140965	6	5	573	0	1	1	0	1	0	0	0	0	11588	116	4	0		0	PCK1	20	56140965	3'UTR	DEL	ATC	TCGA-CZ-5456-01A-01D-1501-10	56014651	56140965	6884555	63	33650											
SLCO4A1	28231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	61299368	61299368	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	61299368	A	T	61299368	3	4	573	1	0	0	0	0	1	0	0	0	14742	391	14	5	1673	5	SLCO4A1	20	61299368	Missense_Mutation	SNP	A	TCGA-CZ-5456-01A-01D-1501-10	5158403	61299368	1726152	64	33651											
KRTAP19-8	728299	hgsc.bcm.edu	37	21	32410670	32410671	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	32410671	-	C	32410670	7	5	573	1	0	1	1	0	0	0	0	0	8542	962	34	0	102	0	KRTAP19-8	21	32410670	Frame_Shift_Ins	INS	-	TCGA-CZ-5456-01A-01D-1501-10		32410670	15719225	65	33652											
NEFH	4744	hgsc.bcm.edu	37	22	29885577	29885578	+	In_Frame_Ins	INS	-	-	AGAAGGCCAAGTCCCCTG	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	AGAAGGCCAAGTCCCCTG	29885578	-	AGAAGGCCAAGTCCCCTG	29885577	7	5	573	1	0	1	1	0	0	0	0	0	10321	1291	45	0	1962	0	NEFH	22	29885577	In_Frame_Ins	INS	-	TCGA-CZ-5456-01A-01D-1501-10		29885577	21418989	66	33653											
DDX3X	1654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	41203543	41203544	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	41203544	-	T	41203543	7	5	573	1	0	1	1	0	0	0	0	0	4360	449	16	0	954	0	DDX3X	23	41203543	Frame_Shift_Ins	INS	-	TCGA-CZ-5456-01A-01D-1501-10		41203543	114067017	67	33654											
SLC7A3	84889	broad.mit.edu;ucsc.edu	37	X	70147708	70147708	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	C	70147708	C	C	70147708	3	2	573	1	0	0	0	0	1	0	0	0	14711	101	4	5	904	5	SLC7A3	23	70147708	Missense_Mutation	SNP	A	TCGA-CZ-5456-01A-01D-1501-10	28944165	70147708	85122852	68	33655											
RAB33A	9363	broad.mit.edu;hgsc.bcm.edu	37	X	129306194	129306194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	129306194	C	T	129306194	3	4	573	1	0	0	0	0	1	0	0	0	12935	507	18	2	160	2	RAB33A	23	129306194	Missense_Mutation	SNP	C	TCGA-CZ-5456-01A-01D-1501-10	59158486	129306194	25964366	69	33656											
PASD1	139135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	150842545	150842545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5456-01A-01D-1501-10	TCGA-CZ-5456-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	45d5c746-60e3-4531-8db0-fd648811d45f	fe4271a8-7eda-4760-b5fb-c3f160edde4a	T	150842545	G	T	150842545	3	4	573	1	0	0	0	0	1	0	0	0	11478	1174	41	4	2116	4	PASD1	23	150842545	Missense_Mutation	SNP	G	TCGA-CZ-5456-01A-01D-1501-10	21536351	150842545	4428015	70	33657											
WDR8	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	3564112	3564112	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	3564112	G	A	3564112	4	1	574	1	0	0	0	0	0	1	0	0	17341	1357	47	2	1344	2	WDR8	1	3564112	Nonsense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10		3564112	245686509	1	33658											
DNAJC11	55735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	6704634	6704634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	6704634	C	T	6704634	3	4	574	1	0	0	0	0	1	0	0	0	4632	478	17	2	626	2	DNAJC11	1	6704634	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	3140522	6704634	242545987	2	33659											
UBXN11	91544	broad.mit.edu	37	1	26608890	26608891	+	Frame_Shift_Del	DEL	CC	-	-	rs140364749	bycluster;by1000genomes;alternate_allele	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	-	26608891	-	-	26608890	7	5	574	1	0	1	0	1	0	0	0	0	16925	507	18	0	103	0	UBXN11	1	26608890	Frame_Shift_Del	DEL	CC	TCGA-CZ-5457-01A-01D-1501-10	19904256	26608890	222641731	3	33660	436	2									
UBXN11	91544	broad.mit.edu	37	1	26608893	26608896	+	Frame_Shift_Del	DEL	GGAC	-	-	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	GGAC	GGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	-	26608896	-	-	26608893	7	5	574	1	0	1	0	1	0	0	0	0	16925	1232	43	0	106	0	UBXN11	1	26608893	Frame_Shift_Del	DEL	GGAC	TCGA-CZ-5457-01A-01D-1501-10	3	26608893	222641728	4	33661	436	2									
DDX20	11218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	112308358	112308358	+	Splice_Site	SNP	G	G	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	112308358	G	A	112308358	5	1	574	1	0	0	0	0	0	0	1	0	4350	956	33	2	1354	2	DDX20	1	112308358	Splice_Site	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	85699465	112308358	136942263	5	33662											
CELF3	11189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151688472	151688472	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	151688472	G	A	151688472	2	1	574	1	0	0	0	0	0	0	0	1	3219	962	34	2		2	CELF3	1	151688472	Silent	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	39380114	151688472	97562149	6	33663											
ILDR2	387597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	166944470	166944470	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	166944470	G	A	166944470	2	1	574	1	0	0	0	0	0	0	0	1	7717	933	33	2		2	ILDR2	1	166944470	Silent	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	15255998	166944470	82306151	7	33664											
DPT	1805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	168698362	168698362	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	168698362	C	T	168698362	4	4	574	1	0	0	0	0	0	1	0	0	4741	624	22	2	570	2	DPT	1	168698362	Nonsense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	1753892	168698362	80552259	8	33665											
SLC9A11	0	hgsc.bcm.edu	37	1	173517587	173517587	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	-	173517587	T	-	173517587	7	5	574	1	0	1	0	1	0	0	0	0	14724	1493	52	0	2040	0	SLC9A11	1	173517587	Frame_Shift_Del	DEL	T	TCGA-CZ-5457-01A-01D-1501-10	4819225	173517587	75733034	9	33666											
KIF14	9928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200587322	200587322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	200587322	G	C	200587322	3	2	574	1	0	0	0	0	1	0	0	0	8283	942	33	4	4532	4	KIF14	1	200587322	Missense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	27069735	200587322	48663299	10	33667											
REN	5972	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	204128614	204128614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	204128614	T	A	204128614	3	1	574	1	0	0	0	0	1	0	0	0	13237	1580	55	5	642	5	REN	1	204128614	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	3541292	204128614	45122007	11	33668											
USH2A	7399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	215955490	215955490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	215955490	C	T	215955490	3	4	574	1	0	0	0	0	1	0	0	0	17048	652	23	1	5050	1	USH2A	1	215955490	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	11826876	215955490	33295131	12	33669											
PRKD3	23683	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	37501595	37501595	+	Silent	SNP	A	A	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	37501595	A	C	37501595	2	2	574	1	0	0	0	0	0	0	0	1	12530	1	1	5		5	PRKD3	2	37501595	Silent	SNP	A	TCGA-CZ-5457-01A-01D-1501-10		37501595	205697778	13	33670											
FIGN	55137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	164468066	164468066	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	164468066	C	T	164468066	2	4	574	1	0	0	0	0	0	0	0	1	5898	639	23	1		1	FIGN	2	164468066	Silent	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	126966471	164468066	78731307	14	33671											
NEUROD1	4760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	182542705	182542705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	182542705	T	C	182542705	3	2	574	1	0	0	0	0	1	0	0	0	10355	1792	62	3	191	3	NEUROD1	2	182542705	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	18074639	182542705	60656668	15	33672											
ADAM23	8745	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	207413075	207413075	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	207413075	G	T	207413075	2	4	574	1	0	0	0	0	0	0	0	1	245	1277	45	4		4	ADAM23	2	207413075	Silent	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	24870370	207413075	35786298	16	33673											
ERBB4	2066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	212576841	212576841	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	212576841	A	T	212576841	3	4	574	1	0	0	0	0	1	0	0	0	5211	101	4	5	2948	5	ERBB4	2	212576841	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10	5163766	212576841	30622532	17	33674											
SPEG	10290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	220333895	220333895	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	220333895	T	G	220333895	3	3	574	1	0	0	0	0	1	0	0	0	15048	1464	51	5	3571	5	SPEG	2	220333895	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	7757054	220333895	22865478	18	33675											
CUL3	8452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	225360600	225360600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	225360600	G	T	225360600	3	4	574	1	0	0	0	0	1	0	0	0	4058	1165	41	4	531	4	CUL3	2	225360600	Missense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	5026705	225360600	17838773	19	33676											
USP40	55230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234468567	234468567	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	234468567	G	A	234468567	4	1	574	1	0	0	0	0	0	1	0	0	17084	1066	37	1	3552	1	USP40	2	234468567	Nonsense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	9107967	234468567	8730806	20	33677											
SPCS1	28972	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52741704	52741704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	52741704	T	G	52741704	3	3	574	1	0	0	0	0	1	0	0	0	15035	1594	55	5	400	5	SPCS1	3	52741704	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10		52741704	145280726	21	33678											
MUC4	4585	hgsc.bcm.edu	37	3	195506550	195506597	+	In_Frame_Del	DEL	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	-	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	-	195506597	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	-	195506550	7	5	574	1	0	1	0	1	0	0	0	0	9985	987	35	0		0	MUC4	3	195506550	In_Frame_Del	DEL	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	TCGA-CZ-5457-01A-01D-1501-10	142764846	195506550	2515880	22	33679											
KDR	3791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	55956163	55956163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	55956163	C	T	55956163	3	4	574	1	0	0	0	0	1	0	0	0	8146	652	23	1	950	1	KDR	4	55956163	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10		55956163	135198113	23	33680											
ADH5	128	broad.mit.edu;hgsc.bcm.edu	37	4	99997942	99997942	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	99997942	T	A	99997942	3	1	574	1	0	0	0	0	1	0	0	0	311	1838	64	5	667	5	ADH5	4	99997942	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	44041779	99997942	91156334	24	33681											
TKTL2	84076	broad.mit.edu;ucsc.edu	37	4	164393649	164393649	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	164393649	G	G	164393649	3	3	574	1	0	0	0	0	1	0	0	0	15948	1493	52	5	646	5	TKTL2	4	164393649	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	64395707	164393649	26760627	25	33682											
TRIO	7204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	14485224	14485224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	14485224	A	T	14485224	3	4	574	1	0	0	0	0	1	0	0	0	16564	14	1	5	6890	5	TRIO	5	14485224	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10		14485224	166430036	26	33683											
HCN1	348980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	45262062	45262062	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	45262062	G	C	45262062	3	2	574	1	0	0	0	0	1	0	0	0	7003	1252	44	4	42	4	HCN1	5	45262062	Missense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	30776838	45262062	135653198	27	33684											
MSH3	4437	hgsc.bcm.edu	37	5	80057496	80057496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	80057496	A	C	80057496	3	2	574	1	0	0	0	0	1	0	0	0	9878	28	1	5	1945	5	MSH3	5	80057496	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10	34795434	80057496	100857764	28	33685											
AQPEP	206338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	115327884	115327884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	115327884	T	A	115327884	3	1	574	1	0	0	0	0	1	0	0	0	834	1461	51	5	1188	5	AQPEP	5	115327884	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	35270388	115327884	65587376	29	33686											
ARHGAP26	23092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	142150382	142150382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	142150382	G	T	142150382	3	4	574	1	0	0	0	0	1	0	0	0	875	1058	37	4	58	4	ARHGAP26	5	142150382	Missense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	26822498	142150382	38764878	30	33687											
DOCK2	1794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	169145692	169145692	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	169145692	G	C	169145692	3	2	574	1	0	0	0	0	1	0	0	0	4689	1174	41	4	2250	4	DOCK2	5	169145692	Missense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	26995310	169145692	11769568	31	33688											
CUL9	23113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43188337	43188337	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	43188337	G	A	43188337	2	1	574	1	0	0	0	0	0	0	0	1	4063	1014	35	2		2	CUL9	6	43188337	Silent	SNP	G	TCGA-CZ-5457-01A-01D-1501-10		43188337	127926730	32	33689											
ARID1B	57492	broad.mit.edu;hgsc.bcm.edu	37	6	157469827	157469827	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	157469827	T	A	157469827	3	1	574	1	0	0	0	0	1	0	0	0	914	1464	51	5	2655	5	ARID1B	6	157469827	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	114281490	157469827	13645240	33	33690											
TULP4	56995	broad.mit.edu;ucsc.edu	37	6	158924983	158924983	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	158924983	A	A	158924983	3	1	574	1	0	0	0	0	1	0	0	0	16788	1580	55	5	4338	5	TULP4	6	158924983	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	1455156	158924983	12190084	34	33691											
TTYH3	80727	broad.mit.edu	37	7	2698601	2698601	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	2698601	T	T	2698601	2	4	574	1	0	0	0	0	0	0	0	1	16753	610	22	2		2	TTYH3	7	2698601	Silent	SNP	C	TCGA-CZ-5457-01A-01D-1501-10		2698601	156440062	35	33692											
TPST1	8460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	65705728	65705728	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	65705728	C	T	65705728	4	4	574	1	0	0	0	0	0	1	0	0	16439	644	23	1	318	1	TPST1	7	65705728	Nonsense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	63007127	65705728	93432935	36	33693											
SPAG8	26206	hgsc.bcm.edu	37	9	35811508	35811508	+	Missense_Mutation	SNP	A	A	G	rs28409023		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	35811508	A	G	35811508	3	3	574	1	0	0	0	0	1	0	0	0	14997	304	11	3	1197	3	SPAG8	9	35811508	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10		35811508	105401923	37	33694	437	2									
SPAG8	26206	hgsc.bcm.edu	37	9	35811509	35811509	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	35811509	G	A	35811509	2	1	574	1	0	0	0	0	0	0	0	1	14997	958	34	2		2	SPAG8	9	35811509	Silent	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	1	35811509	105401922	38	33695	437	2									
OR13C2	392376	broad.mit.edu;hgsc.bcm.edu	37	9	107367525	107367525	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	107367525	G	A	107367525	2	1	574	1	0	0	0	0	0	0	0	1	10941	1252	44	2		2	OR13C2	9	107367525	Silent	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	71556016	107367525	33845906	39	33696											
NUP214	8021	hgsc.bcm.edu;ucsc.edu	37	9	134067639	134067640	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	-	134067640	TC	-	134067639	7	5	574	1	0	1	0	1	0	0	0	0	10769	1783	62	0	3725	0	NUP214	9	134067639	Frame_Shift_Del	DEL	TC	TCGA-CZ-5457-01A-01D-1501-10	26700114	134067639	7145792	40	33697											
EGFL7	51162	broad.mit.edu	37	9	139563044	139563044	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	139563044	G	G	139563044	3	3	574	1	0	0	0	0	1	0	0	0	4966	681	24	4	122	4	EGFL7	9	139563044	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	5495405	139563044	1650387	41	33698											
AGAP7	653268	hgsc.bcm.edu	37	10	51485991	51485991	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	-	51485991	C	-	51485991	7	5	574	1	0	1	0	1	0	0	0	0	373	864	30	0	1808	0	AGAP7	10	51485991	Frame_Shift_Del	DEL	C	TCGA-CZ-5457-01A-01D-1501-10		51485991	84048756	42	33699											
PLAU	5328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75676303	75676303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	75676303	G	C	75676303	3	2	574	1	0	0	0	0	1	0	0	0	12029	943	33	4	1352	4	PLAU	10	75676303	Missense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	24190312	75676303	59858444	43	33700											
TNKS2	80351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	93604754	93604754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	93604754	T	C	93604754	3	2	574	1	0	0	0	0	1	0	0	0	16333	1609	56	3	2204	3	TNKS2	10	93604754	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	17928451	93604754	41929993	44	33701											
EIF4G2	1982	broad.mit.edu;hgsc.bcm.edu	37	11	10820873	10820873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	10820873	A	G	10820873	3	3	574	1	0	0	0	0	1	0	0	0	5039	420	15	3	312	3	EIF4G2	11	10820873	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10		10820873	124185643	45	33702											
KCNA4	3739	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	30033589	30033589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	30033589	C	A	30033589	3	1	574	1	0	0	0	0	1	0	0	0	8012	826	29	4	1328	4	KCNA4	11	30033589	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	19212716	30033589	104972927	46	33703											
CACNA1C	775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	2675675	2675675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	2675675	C	G	2675675	3	3	574	1	0	0	0	0	1	0	0	0	2542	854	30	4	1750	4	CACNA1C	12	2675675	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10		2675675	131176220	47	33704											
ERP27	121506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	15087884	15087884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	15087884	T	C	15087884	3	2	574	1	0	0	0	0	1	0	0	0	5243	1812	63	3	602	3	ERP27	12	15087884	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	12412209	15087884	118764011	48	33705											
COL2A1	1280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	48388230	48388230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	48388230	C	T	48388230	3	4	574	1	0	0	0	0	1	0	0	0	3689	835	29	2	3842	2	COL2A1	12	48388230	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	33300346	48388230	85463665	49	33706											
MLL2	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	49436587	49436587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	49436587	G	C	49436587	3	2	574	1	0	0	0	0	1	0	0	0	9628	933	33	4	11010	4	MLL2	12	49436587	Missense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	1048357	49436587	84415308	50	33707											
NUP37	79023	hgsc.bcm.edu;ucsc.edu	37	12	102471203	102471203	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	-	102471203	C	-	102471203	7	5	574	1	0	1	0	1	0	0	0	0	10771	922	32	0	377	0	NUP37	12	102471203	Frame_Shift_Del	DEL	C	TCGA-CZ-5457-01A-01D-1501-10	53034616	102471203	31380692	51	33708											
DAO	1610	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	109290797	109290797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	109290797	A	G	109290797	3	3	574	1	0	0	0	0	1	0	0	0	4233	333	12	3	654	3	DAO	12	109290797	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10	6819594	109290797	24561098	52	33709											
P2RX4	5025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121660766	121660766	+	Silent	SNP	G	G	A	rs140643624		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	121660766	G	A	121660766	2	1	574	1	0	0	0	0	0	0	0	1	11349	1252	44	2		2	P2RX4	12	121660766	Silent	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	12369969	121660766	12191129	53	33710											
LTB4R	1241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24785139	24785139	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	24785139	C	T	24785139	2	4	574	1	0	0	0	0	0	0	0	1	9078	564	20	2		2	LTB4R	14	24785139	Silent	SNP	C	TCGA-CZ-5457-01A-01D-1501-10		24785139	82564401	54	33711											
VIPAR	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	77916095	77916095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	77916095	C	T	77916095	3	4	574	1	0	0	0	0	1	0	0	0	17180	521	18	2	1201	2	VIPAR	14	77916095	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	53130956	77916095	29433445	55	33712											
THBS1	7057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	39881491	39881491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	39881491	C	A	39881491	3	1	574	1	0	0	0	0	1	0	0	0	15865	623	22	4	1904	4	THBS1	15	39881491	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10		39881491	62649901	56	33713											
TGM7	116179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43577100	43577100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	43577100	C	T	43577100	3	4	574	1	0	0	0	0	1	0	0	0	15847	768	27	1	1244	1	TGM7	15	43577100	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	3695609	43577100	58954292	57	33714											
ZNF280D	54816	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	56924221	56924221	+	Silent	SNP	A	A	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	56924221	A	C	56924221	2	2	574	1	0	0	0	0	0	0	0	1	17829	1	1	5		5	ZNF280D	15	56924221	Silent	SNP	A	TCGA-CZ-5457-01A-01D-1501-10	13347121	56924221	45607171	58	33715											
BCL2A1	597	broad.mit.edu;hgsc.bcm.edu	37	15	80253460	80253460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	80253460	T	A	80253460	3	1	574	1	0	0	0	0	1	0	0	0	1366	1606	56	5	54	5	BCL2A1	15	80253460	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	23329239	80253460	22277932	59	33716											
IFT140	9742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1616280	1616280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	1616280	G	A	1616280	3	1	574	1	0	0	0	0	1	0	0	0	7563	1232	43	2	2669	2	IFT140	16	1616280	Missense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10		1616280	88738473	60	33717											
MKL2	57496	broad.mit.edu;ucsc.edu	37	16	14355166	14355166	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	14355166	G	G	14355166	3	3	574	1	0	0	0	0	1	0	0	0	9609	564	20	4	3073	4	MKL2	16	14355166	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	12738886	14355166	75999587	61	33718											
ERI2	112479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	20810063	20810063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	20810063	C	T	20810063	3	4	574	1	0	0	0	0	1	0	0	0	5230	710	25	2	1287	2	ERI2	16	20810063	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	6454897	20810063	69544690	62	33719											
N4BP1	9683	hgsc.bcm.edu;ucsc.edu	37	16	48595382	48595382	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	-	48595382	A	-	48595382	7	5	574	1	0	1	0	1	0	0	0	0	10116	246	9	0	1542	0	N4BP1	16	48595382	Frame_Shift_Del	DEL	A	TCGA-CZ-5457-01A-01D-1501-10	27785319	48595382	41759371	63	33720											
CES2	8824	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	66973125	66973125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	66973125	T	C	66973125	3	2	574	1	0	0	0	0	1	0	0	0	3272	1522	53	3	489	3	CES2	16	66973125	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	18377743	66973125	23381628	64	33721											
CDH3	1001	broad.mit.edu;hgsc.bcm.edu	37	16	68721619	68721619	+	Missense_Mutation	SNP	C	C	T	rs145851551		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	68721619	C	T	68721619	3	4	574	1	0	0	0	0	1	0	0	0	3113	536	19	1	1821	1	CDH3	16	68721619	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	1748494	68721619	21633134	65	33722											
METT10D	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	2323880	2323880	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	2323880	T	G	2323880	3	3	574	1	0	0	0	0	1	0	0	0	9497	1841	64	5	619	5	METT10D	17	2323880	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10		2323880	78871330	66	33723											
NUFIP2	57532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27613674	27613674	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	27613674	G	T	27613674	2	4	574	1	0	0	0	0	0	0	0	1	10756	932	33	4		4	NUFIP2	17	27613674	Silent	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	25289794	27613674	53581536	67	33724											
DLX3	1747	broad.mit.edu;hgsc.bcm.edu	37	17	48069215	48069215	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	48069215	A	T	48069215	3	4	574	1	0	0	0	0	1	0	0	0	4574	246	9	5	337	5	DLX3	17	48069215	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10	20455541	48069215	33125995	68	33725											
CD300LB	124599	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72522164	72522164	+	Silent	SNP	G	G	T	rs111972938	alternate_allele	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	72522164	G	T	72522164	2	4	574	1	0	0	0	0	0	0	0	1	3001	1219	43	4		4	CD300LB	17	72522164	Silent	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	24452949	72522164	8673046	69	33726											
KCTD2	23510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73058235	73058235	+	Silent	SNP	C	C	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	73058235	C	G	73058235	2	3	574	1	0	0	0	0	0	0	0	1	8114	668	24	4		4	KCTD2	17	73058235	Silent	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	536071	73058235	8136975	70	33727											
RHBDF2	79651	broad.mit.edu;ucsc.edu	37	17	74468019	74468019	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	74468019	T	T	74468019	3	4	574	1	0	0	0	0	1	0	0	0	13333	159	6	5	307	5	RHBDF2	17	74468019	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10	1409784	74468019	6727191	71	33728											
SFRS2	0	broad.mit.edu	37	17	74732524	74732524	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	74732524	A	A	74732524	4	1	574	1	0	0	0	0	0	1	0	0	14188	1124	39	1	284	1	SFRS2	17	74732524	Nonsense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10	264505	74732524	6462686	72	33729											
HGS	9146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	79652641	79652641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	79652641	C	T	79652641	3	4	574	1	0	0	0	0	1	0	0	0	7094	768	27	1	50	1	HGS	17	79652641	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	4920117	79652641	1542569	73	33730											
THOC4	0	broad.mit.edu;hgsc.bcm.edu	37	17	79846407	79846407	+	Missense_Mutation	SNP	C	C	A	rs150564817	alternate_allele	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	79846407	C	A	79846407	3	1	574	1	0	0	0	0	1	0	0	0	15879	738	26	4	215	4	THOC4	17	79846407	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	193766	79846407	1348803	74	33731											
PLEKHJ1	55111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	2234235	2234235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	2234235	G	T	2234235	3	4	574	1	0	0	0	0	1	0	0	0	12086	1281	45	4	227	4	PLEKHJ1	19	2234235	Missense_Mutation	SNP	G	TCGA-CZ-5457-01A-01D-1501-10		2234235	56894748	75	33732											
SLC25A23	79085	broad.mit.edu;hgsc.bcm.edu	37	19	6444201	6444201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	6444201	A	T	6444201	3	4	574	1	0	0	0	0	1	0	0	0	14499	362	13	5	231	5	SLC25A23	19	6444201	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10	4209966	6444201	52684782	76	33733											
MYO1F	4542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8595162	8595162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	8595162	C	T	8595162	3	4	574	1	0	0	0	0	1	0	0	0	10080	652	23	1	1082	1	MYO1F	19	8595162	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	2150961	8595162	50533821	77	33734											
JUNB	3726	broad.mit.edu;hgsc.bcm.edu	37	19	12903494	12903494	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	T	12903494	C	T	12903494	2	4	574	1	0	0	0	0	0	0	0	1	7977	813	29	2		2	JUNB	19	12903494	Silent	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	4308332	12903494	46225489	78	33735											
NPHS1	4868	hgsc.bcm.edu	37	19	36330419	36330420	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	G	36330420	-	G	36330419	7	5	574	1	0	1	1	0	0	0	0	0	10589	188	7	0	855	0	NPHS1	19	36330419	Frame_Shift_Ins	INS	-	TCGA-CZ-5457-01A-01D-1501-10	23426925	36330419	22798564	79	33736											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39034251	39034251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	39034251	C	A	39034251	3	1	574	1	0	0	0	0	1	0	0	0	13781	739	26	4	12200	4	RYR1	19	39034251	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10	2703832	39034251	20094732	80	33737											
NAT14	57106	broad.mit.edu	37	19	55998035	55998035	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	-	55998035	-	-	55998035	7	5	574	1	0	1	0	1	0	0	0	0	10182	1335	47	0	339	0	NAT14	19	55998035	Frame_Shift_Del	DEL	G	TCGA-CZ-5457-01A-01D-1501-10	16963784	55998035	3130948	81	33738											
PEG3	5178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57325755	57325755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	57325755	T	C	57325755	3	2	574	1	0	0	0	0	1	0	0	0	11727	1551	54	3	715	3	PEG3	19	57325755	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	1327720	57325755	1803228	82	33739											
SAMHD1	25939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	35547877	35547877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	35547877	T	C	35547877	3	2	574	1	0	0	0	0	1	0	0	0	13841	1754	61	3	1178	3	SAMHD1	20	35547877	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10		35547877	27477643	83	33740											
CHEK2	11200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	29121349	29121349	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	29121349	A	C	29121349	3	2	574	1	0	0	0	0	1	0	0	0	3337	159	6	5	1357	5	CHEK2	22	29121349	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01D-1501-10		29121349	22183217	84	33741											
RPS19BP1	91582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	39928457	39928457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	C	39928457	T	C	39928457	3	2	574	1	0	0	0	0	1	0	0	0	13643	1493	52	3	298	3	RPS19BP1	22	39928457	Missense_Mutation	SNP	T	TCGA-CZ-5457-01A-01D-1501-10	10807108	39928457	11376109	85	33742											
ATRX	546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	76875909	76875909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2	a9a305ba-8696-4646-8ab6-856a7572854f	A	76875909	C	A	76875909	3	1	574	1	0	0	0	0	1	0	0	0	1208	854	30	4	2316	4	ATRX	23	76875909	Missense_Mutation	SNP	C	TCGA-CZ-5457-01A-01D-1501-10		76875909	78394651	86	33743											
VHL	7428	hgsc.bcm.edu	37	3	10183800	10183800	+	Missense_Mutation	SNP	A	A	T	rs143985153	alternate_allele	TCGA-CZ-5457-01A-01W-1528-10	TCGA-CZ-5457-11A-01W-1528-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq	.	.	PacBio RS	c1ee1be5-2a5d-44ac-baa2-ccb30e862ae0	699d8dc1-8145-4fa5-b480-c970b5ed6138	T	10183800	A	T	10183800	3	4	575	1	0	0	0	0	1	0	0	0	17174	43	2	5	271	5	VHL	3	10183800	Missense_Mutation	SNP	A	TCGA-CZ-5457-01A-01W-1528-10		10183800	187838630	1	33744											
SPTA1	6708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158644146	158644146	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	T	158644146	A	T	158644146	3	4	576	1	0	0	0	0	1	0	0	0	15128	214	8	5	6108	5	SPTA1	1	158644146	Missense_Mutation	SNP	A	TCGA-CZ-5458-01A-01D-1501-10		158644146	90606475	1	33745											
CRB1	23418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197411309	197411309	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	197411309	A	C	197411309	3	2	576	1	0	0	0	0	1	0	0	0	3850	217	8	5	3934	5	CRB1	1	197411309	Missense_Mutation	SNP	A	TCGA-CZ-5458-01A-01D-1501-10	38767163	197411309	51839312	2	33746											
NUAK2	81788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205275383	205275383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	T	205275383	G	T	205275383	3	4	576	1	0	0	0	0	1	0	0	0	10720	1377	48	4	1275	4	NUAK2	1	205275383	Missense_Mutation	SNP	G	TCGA-CZ-5458-01A-01D-1501-10	7864074	205275383	43975238	3	33747											
SLC1A4	6509	broad.mit.edu	37	2	65217245	65217245	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	65217245	C	C	65217245	3	2	576	1	0	0	0	0	1	0	0	0	14447	991	35	4	470	4	SLC1A4	2	65217245	Missense_Mutation	SNP	G	TCGA-CZ-5458-01A-01D-1501-10		65217245	177982128	4	33748											
UNC50	25972	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	99232913	99232913	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	G	99232913	C	G	99232913	3	3	576	1	0	0	0	0	1	0	0	0	17002	478	17	4	574	4	UNC50	2	99232913	Missense_Mutation	SNP	C	TCGA-CZ-5458-01A-01D-1501-10	34015668	99232913	143966460	5	33749											
RNF25	64320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	219532832	219532832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	A	219532832	G	A	219532832	3	1	576	1	0	0	0	0	1	0	0	0	13498	1232	43	2	1150	2	RNF25	2	219532832	Missense_Mutation	SNP	G	TCGA-CZ-5458-01A-01D-1501-10	120299919	219532832	23666541	6	33750											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188240	10188240	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	A	10188240	T	A	10188240	3	1	576	1	0	0	0	0	1	0	0	0	17174	1609	56	5	389	5	VHL	3	10188240	Missense_Mutation	SNP	T	TCGA-CZ-5458-01A-01D-1501-10		10188240	187834190	7	33751											
NBEAL2	23218	broad.mit.edu;ucsc.edu	37	3	47037324	47037324	+	Silent	SNP	C	G	G	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	G	47037324	G	G	47037324	2	3	576	1	0	0	0	0	0	0	0	1	10196	639	23	4		4	NBEAL2	3	47037324	Silent	SNP	C	TCGA-CZ-5458-01A-01D-1501-10	36849084	47037324	150985106	8	33752											
SLC35A5	55032	broad.mit.edu;ucsc.edu	37	3	112300127	112300127	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	G	112300127	G	G	112300127	3	3	576	1	0	0	0	0	1	0	0	0	14587	246	9	3	1181	3	SLC35A5	3	112300127	Missense_Mutation	SNP	A	TCGA-CZ-5458-01A-01D-1501-10	65262803	112300127	85722303	9	33753											
TRA2B	6434	broad.mit.edu;ucsc.edu	37	3	185643314	185643314	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	185643314	C	C	185643314	3	2	576	1	0	0	0	0	1	0	0	0	16446	1058	37	4	623	4	TRA2B	3	185643314	Missense_Mutation	SNP	G	TCGA-CZ-5458-01A-01D-1501-10	73343187	185643314	12379116	10	33754											
ETF1	2107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137848455	137848455	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	A	137848455	G	A	137848455	4	1	576	1	0	0	0	0	0	1	0	0	5270	1299	45	2	607	2	ETF1	5	137848455	Nonsense_Mutation	SNP	G	TCGA-CZ-5458-01A-01D-1501-10		137848455	43066805	11	33755											
EYS	346007	hgsc.bcm.edu;ucsc.edu	37	6	64436568	64436568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	G	64436568	A	G	64436568	3	3	576	1	0	0	0	0	1	0	0	0	5334	333	12	3	1365	3	EYS	6	64436568	Missense_Mutation	SNP	A	TCGA-CZ-5458-01A-01D-1501-10		64436568	106678499	12	33756											
NT5C3	51251	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	33055308	33055308	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	A	33055308	G	A	33055308	2	1	576	1	0	0	0	0	0	0	0	1	10695	933	33	2		2	NT5C3	7	33055308	Silent	SNP	G	TCGA-CZ-5458-01A-01D-1501-10		33055308	126083355	13	33757											
UBE3C	9690	broad.mit.edu;ucsc.edu	37	7	157018150	157018150	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	A	157018150	A	A	157018150	3	1	576	1	0	0	0	0	1	0	0	0	16893	1261	44	2	2216	2	UBE3C	7	157018150	Missense_Mutation	SNP	G	TCGA-CZ-5458-01A-01D-1501-10	123962842	157018150	2120513	14	33758											
LEPROTL1	23484	broad.mit.edu	37	8	29994916	29994916	+	Silent	SNP	T	G	G	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	G	29994916	G	G	29994916	2	3	576	1	0	0	0	0	0	0	0	1	8740	1538	54	5		5	LEPROTL1	8	29994916	Silent	SNP	T	TCGA-CZ-5458-01A-01D-1501-10		29994916	116369106	15	33759											
NKAIN3	286183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	63831061	63831061	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	T	63831061	A	T	63831061	3	4	576	1	0	0	0	0	1	0	0	0	10444	246	9	5	539	5	NKAIN3	8	63831061	Missense_Mutation	SNP	A	TCGA-CZ-5458-01A-01D-1501-10	33836145	63831061	82532961	16	33760											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110471954	110471954	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	110471954	T	C	110471954	3	2	576	1	0	0	0	0	1	0	0	0	11979	1725	60	3	7321	3	PKHD1L1	8	110471954	Missense_Mutation	SNP	T	TCGA-CZ-5458-01A-01D-1501-10	46640893	110471954	35892068	17	33761											
KAT5	10524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65480531	65480531	+	Splice_Site	SNP	T	T	G	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	G	65480531	T	G	65480531	5	3	576	1	0	0	0	0	0	0	1	0	7990	1710	59	5	396	5	KAT5	11	65480531	Splice_Site	SNP	T	TCGA-CZ-5458-01A-01D-1501-10		65480531	69525985	18	33762											
CFL1	1072	hgsc.bcm.edu	37	11	65622863	65622863	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	-	65622863	G	-	65622863	7	5	576	1	0	1	0	1	0	0	0	0	3292	991	35	0	59	0	CFL1	11	65622863	Frame_Shift_Del	DEL	G	TCGA-CZ-5458-01A-01D-1501-10	142332	65622863	69383653	19	33763											
STAT2	6773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56748290	56748290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	56748290	T	C	56748290	3	2	576	1	0	0	0	0	1	0	0	0	15277	1588	55	3	1881	3	STAT2	12	56748290	Missense_Mutation	SNP	T	TCGA-CZ-5458-01A-01D-1501-10		56748290	77103605	20	33764											
RDH16	8608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57345981	57345981	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	T	57345981	C	T	57345981	2	4	576	1	0	0	0	0	0	0	0	1	13207	523	19	1		1	RDH16	12	57345981	Silent	SNP	C	TCGA-CZ-5458-01A-01D-1501-10	597691	57345981	76505914	21	33765											
MTUS2	23281	broad.mit.edu;ucsc.edu	37	13	30071435	30071435	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	30071435	C	C	30071435	3	2	576	1	0	0	0	0	1	0	0	0	9973	1059	37	4	3770	4	MTUS2	13	30071435	Missense_Mutation	SNP	G	TCGA-CZ-5458-01A-01D-1501-10		30071435	85098443	22	33766											
C14orf145	0	broad.mit.edu;ucsc.edu	37	14	81259370	81259370	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	81259370	C	C	81259370	3	2	576	1	0	0	0	0	1	0	0	0	1751	1696	59	3	2038	3	C14orf145	14	81259370	Missense_Mutation	SNP	T	TCGA-CZ-5458-01A-01D-1501-10		81259370	26090170	23	33767											
RYR3	6263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	33873834	33873834	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	T	33873834	C	T	33873834	2	4	576	1	0	0	0	0	0	0	0	1	13783	489	17	2		2	RYR3	15	33873834	Silent	SNP	C	TCGA-CZ-5458-01A-01D-1501-10		33873834	68657558	24	33768											
ARPP19	10776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52844224	52844224	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	T	52844224	C	T	52844224	2	4	576	1	0	0	0	0	0	0	0	1	977	639	23	1		1	ARPP19	15	52844224	Silent	SNP	C	TCGA-CZ-5458-01A-01D-1501-10	18970390	52844224	49687168	25	33769											
RAB11FIP3	9727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	532561	532561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	A	532561	G	A	532561	3	1	576	1	0	0	0	0	1	0	0	0	12908	1059	37	1	973	1	RAB11FIP3	16	532561	Missense_Mutation	SNP	G	TCGA-CZ-5458-01A-01D-1501-10		532561	89822192	26	33770											
CNOT1	23019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	58564211	58564211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	58564211	T	C	58564211	3	2	576	1	0	0	0	0	1	0	0	0	3619	1841	64	3	940	3	CNOT1	16	58564211	Missense_Mutation	SNP	T	TCGA-CZ-5458-01A-01D-1501-10	58031650	58564211	31790542	27	33771											
C16orf55	124045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	89724745	89724745	+	Missense_Mutation	SNP	G	G	C	rs149646248	alternate_allele	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	89724745	G	C	89724745	3	2	576	1	0	0	0	0	1	0	0	0	1822	942	33	4	130	4	C16orf55	16	89724745	Missense_Mutation	SNP	G	TCGA-CZ-5458-01A-01D-1501-10	31160534	89724745	630008	28	33772											
MARCH10	162333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	60813347	60813347	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	A	60813347	T	A	60813347	4	1	576	1	0	0	0	0	0	1	0	0	9306	1850	64	5	568	5	MARCH10	17	60813347	Nonsense_Mutation	SNP	T	TCGA-CZ-5458-01A-01D-1501-10		60813347	20381863	29	33773											
GALR1	2587	broad.mit.edu;ucsc.edu	37	18	74962847	74962847	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	C	74962847	C	C	74962847	3	2	576	1	0	0	0	0	1	0	0	0	6234	1609	56	3	345	3	GALR1	18	74962847	Missense_Mutation	SNP	T	TCGA-CZ-5458-01A-01D-1501-10		74962847	3114401	30	33774											
LILRB1	10859	broad.mit.edu;hgsc.bcm.edu	37	19	55142960	55142960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	T	55142960	C	T	55142960	3	4	576	1	0	0	0	0	1	0	0	0	8797	623	22	2	90	2	LILRB1	19	55142960	Missense_Mutation	SNP	C	TCGA-CZ-5458-01A-01D-1501-10		55142960	3986023	31	33775											
MAGT1	84061	broad.mit.edu;hgsc.bcm.edu	37	X	77150869	77150869	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1737382a-a1c9-45e1-b009-a29be1d93749	3accf146-13ec-4425-8326-31363f8c1234	T	77150869	G	T	77150869	2	4	576	1	0	0	0	0	0	0	0	1	9203	1335	47	4		4	MAGT1	23	77150869	Silent	SNP	G	TCGA-CZ-5458-01A-01D-1501-10		77150869	78119691	32	33776											
LRRC7	57554	broad.mit.edu	37	1	70505476	70505476	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	70505476	A	A	70505476	2	1	577	1	0	0	0	0	0	0	0	1	9027	1246	43	2		2	LRRC7	1	70505476	Silent	SNP	G	TCGA-CZ-5459-01A-01D-1501-10		70505476	178745145	1	33777											
HCN3	57657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155254427	155254427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	155254427	C	T	155254427	3	4	577	1	0	0	0	0	1	0	0	0	7005	623	22	2	982	2	HCN3	1	155254427	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	84748951	155254427	93996194	2	33778											
SCYL3	57147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	169833584	169833584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	169833584	A	G	169833584	3	3	577	1	0	0	0	0	1	0	0	0	13962	188	7	3	1371	3	SCYL3	1	169833584	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	14579157	169833584	79417037	3	33779											
ZBTB37	84614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	173854993	173854993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	173854993	C	A	173854993	3	1	577	1	0	0	0	0	1	0	0	0	17550	827	29	4	1316	4	ZBTB37	1	173854993	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	4021409	173854993	75395628	4	33780											
PM20D1	148811	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205819199	205819199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	205819199	A	T	205819199	3	4	577	1	0	0	0	0	1	0	0	0	12135	217	8	5	1558	5	PM20D1	1	205819199	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	31964206	205819199	43431422	5	33781											
CDC42BPA	8476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	227192738	227192738	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	227192738	A	G	227192738	2	3	577	1	0	0	0	0	0	0	0	1	3074	175	7	3		3	CDC42BPA	1	227192738	Silent	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	21373539	227192738	22057883	6	33782											
RYR2	6262	broad.mit.edu	37	1	237955606	237955606	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	237955606	A	A	237955606	3	1	577	1	0	0	0	0	1	0	0	0	13782	1349	47	2	14139	2	RYR2	1	237955606	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	10762868	237955606	11295015	7	33783											
PROM2	150696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	95947697	95947697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	95947697	C	A	95947697	3	1	577	1	0	0	0	0	1	0	0	0	12566	739	26	4	1626	4	PROM2	2	95947697	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10		95947697	147251676	8	33784											
COBLL1	22837	broad.mit.edu;hgsc.bcm.edu	37	2	165551694	165551694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	C	165551694	T	C	165551694	3	2	577	1	0	0	0	0	1	0	0	0	3656	1512	53	3	1190	3	COBLL1	2	165551694	Missense_Mutation	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	69603997	165551694	77647679	9	33785											
NOSTRIN	115677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	169707624	169707624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	169707624	C	A	169707624	3	1	577	1	0	0	0	0	1	0	0	0	10553	827	29	4	870	4	NOSTRIN	2	169707624	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	4155930	169707624	73491749	10	33786											
SLC25A12	8604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	172725235	172725235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	172725235	C	A	172725235	3	1	577	1	0	0	0	0	1	0	0	0	14487	912	32	4	1935	4	SLC25A12	2	172725235	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	3017611	172725235	70474138	11	33787											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179468956	179468956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	179468956	C	T	179468956	3	4	577	1	0	0	0	0	1	0	0	0	16747	710	25	2	53559	2	TTN	2	179468956	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	6743721	179468956	63730417	12	33788											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47125791	47125791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	47125791	A	G	47125791	3	3	577	1	0	0	0	0	1	0	0	0	14144	188	7	3	2255	3	SETD2	3	47125791	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10		47125791	150896639	13	33789											
MBD4	8930	broad.mit.edu;ucsc.edu	37	3	129152727	129152727	+	Silent	SNP	A	G	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	129152727	G	G	129152727	2	3	577	1	0	0	0	0	0	0	0	1	9353	233	9	3		3	MBD4	3	129152727	Silent	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	82026936	129152727	68869703	14	33790											
CRIPAK	285464	broad.mit.edu;ucsc.edu	37	4	1388536	1388536	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	1388536	A	A	1388536	2	1	577	1	0	0	0	0	0	0	0	1	3879	1306	46	2		2	CRIPAK	4	1388536	Silent	SNP	G	TCGA-CZ-5459-01A-01D-1501-10		1388536	189765740	15	33791											
RBPJ	3516	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	26430436	26430436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	26430436	A	G	26430436	3	3	577	1	0	0	0	0	1	0	0	0	13174	246	9	3	974	3	RBPJ	4	26430436	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	25041900	26430436	164723840	16	33792											
LIN54	132660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83857207	83857207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	83857207	G	T	83857207	3	4	577	1	0	0	0	0	1	0	0	0	8816	942	33	4	489	4	LIN54	4	83857207	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	57426771	83857207	107297069	17	33793											
PDE5A	8654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	120446851	120446851	+	Splice_Site	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	120446851	C	A	120446851	5	1	577	1	0	0	0	0	0	0	1	0	11651	695	24	4	1035	4	PDE5A	4	120446851	Splice_Site	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	36589644	120446851	70707425	18	33794											
KIAA1109	84162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	123274224	123274224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	123274224	A	T	123274224	3	4	577	1	0	0	0	0	1	0	0	0	8215	101	4	5	14329	5	KIAA1109	4	123274224	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	2827373	123274224	67880052	19	33795											
CCRN4L	25819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	139966177	139966177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	C	139966177	T	C	139966177	3	2	577	1	0	0	0	0	1	0	0	0	2953	1435	50	3	855	3	CCRN4L	4	139966177	Missense_Mutation	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	16691953	139966177	51188099	20	33796											
SORBS2	8470	broad.mit.edu;ucsc.edu	37	4	186545257	186545257	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	C	186545257	C	C	186545257	3	2	577	1	0	0	0	0	1	0	0	0	14941	1280	45	4	2024	4	SORBS2	4	186545257	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	46579080	186545257	4609019	21	33797											
LMBRD2	92255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	36136613	36136613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	36136613	A	G	36136613	3	3	577	1	0	0	0	0	1	0	0	0	8850	72	3	3	1594	3	LMBRD2	5	36136613	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10		36136613	144778647	22	33798											
C5orf42	65250	broad.mit.edu	37	5	37122589	37122589	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	37122589	G	G	37122589	3	3	577	1	0	0	0	0	1	0	0	0	2303	86	3	3	819	3	C5orf42	5	37122589	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	985976	37122589	143792671	23	33799											
DAB2	1601	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	39383077	39383077	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	39383077	A	G	39383077	2	3	577	1	0	0	0	0	0	0	0	1	4220	407	15	3		3	DAB2	5	39383077	Silent	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	2260488	39383077	141532183	24	33800											
NUDT12	83594	broad.mit.edu;hgsc.bcm.edu	37	5	102891795	102891795	+	Silent	SNP	A	A	C	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	C	102891795	A	C	102891795	2	2	577	1	0	0	0	0	0	0	0	1	10735	117	5	5		5	NUDT12	5	102891795	Silent	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	63508718	102891795	78023465	25	33801											
MYOT	9499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137222571	137222571	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	137222571	T	A	137222571	2	1	577	1	0	0	0	0	0	0	0	1	10101	1567	55	5		5	MYOT	5	137222571	Silent	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	34330776	137222571	43692689	26	33802											
CTNNA1	1495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	138147874	138147874	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	138147874	G	T	138147874	2	4	577	1	0	0	0	0	0	0	0	1	4014	1335	47	4		4	CTNNA1	5	138147874	Silent	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	925303	138147874	42767386	27	33803											
RNF14	9604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141354483	141354483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	141354483	C	T	141354483	3	4	577	1	0	0	0	0	1	0	0	0	13456	838	29	2	275	2	RNF14	5	141354483	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	3206609	141354483	39560777	28	33804											
EHMT2	10919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	31848507	31848507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	31848507	C	T	31848507	3	4	577	1	0	0	0	0	1	0	0	0	4986	884	31	1	245	1	EHMT2	6	31848507	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10		31848507	139266560	29	33805											
FKBPL	63943	broad.mit.edu;ucsc.edu	37	6	32096783	32096783	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	32096783	G	G	32096783	3	3	577	1	0	0	0	0	1	0	0	0	5923	739	26	4	278	4	FKBPL	6	32096783	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	248276	32096783	139018284	30	33806											
XPO5	57510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43493658	43493658	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	43493658	A	G	43493658	2	3	577	1	0	0	0	0	0	0	0	1	17459	231	8	3		3	XPO5	6	43493658	Silent	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	11396875	43493658	127621409	31	33807											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56417328	56417328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	56417328	T	G	56417328	3	3	577	1	0	0	0	0	1	0	0	0	4785	1812	63	5	7294	5	DST	6	56417328	Missense_Mutation	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	12923670	56417328	114697739	32	33808											
MAP3K4	4216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	161523807	161523807	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	C	161523807	T	C	161523807	2	2	577	1	0	0	0	0	0	0	0	1	9259	1635	57	3		3	MAP3K4	6	161523807	Silent	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	105106479	161523807	9591260	33	33809											
PHF14	9678	broad.mit.edu	37	7	11076624	11076624	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	C	11076624	C	C	11076624	3	2	577	1	0	0	0	0	1	0	0	0	11832	1087	38	4	1924	4	PHF14	7	11076624	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10		11076624	148062039	34	33810											
GPR141	353345	hgsc.bcm.edu;ucsc.edu	37	7	37780555	37780555	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	37780555	T	-	37780555	7	5	577	1	0	1	0	1	0	0	0	0	6656	1493	52	0	562	0	GPR141	7	37780555	Frame_Shift_Del	DEL	T	TCGA-CZ-5459-01A-01D-1501-10	26703931	37780555	121358108	35	33811											
URGCP	55665	broad.mit.edu;hgsc.bcm.edu	37	7	43916855	43916855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	43916855	G	T	43916855	3	4	577	1	0	0	0	0	1	0	0	0	17038	971	34	4	592	4	URGCP	7	43916855	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	6136300	43916855	115221808	36	33812											
CLIP2	7461	broad.mit.edu	37	7	73771615	73771615	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	73771615	-	-	73771615	7	5	577	1	0	1	0	1	0	0	0	0	3535	1103	39	0	1041	0	CLIP2	7	73771615	Frame_Shift_Del	DEL	G	TCGA-CZ-5459-01A-01D-1501-10	29854760	73771615	85367048	37	33813											
CUX1	1523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	101747717	101747717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	101747717	A	G	101747717	3	3	577	1	0	0	0	0	1	0	0	0	4066	246	9	3	597	3	CUX1	7	101747717	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	27976102	101747717	57390946	38	33814											
OR2F1	26211	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	143657717	143657717	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	143657717	C	T	143657717	2	4	577	1	0	0	0	0	0	0	0	1	11003	489	17	2		2	OR2F1	7	143657717	Silent	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	41910000	143657717	15480946	39	33815											
ATG9B	285973	broad.mit.edu	37	7	150714122	150714122	+	Splice_Site	SNP	C	T	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	150714122	T	T	150714122	5	4	577	1	0	0	0	0	0	0	1	0	1103	521	18	2	503	2	ATG9B	7	150714122	Splice_Site	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	7056405	150714122	8424541	40	33816											
MTUS1	57509	hgsc.bcm.edu	37	8	17573333	17573333	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	17573333	A	-	17573333	7	5	577	1	0	1	0	1	0	0	0	0	9972	362	13	0	1454	0	MTUS1	8	17573333	Frame_Shift_Del	DEL	A	TCGA-CZ-5459-01A-01D-1501-10		17573333	128790689	41	33817											
GFRA2	2675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	21563505	21563505	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	21563505	C	T	21563505	2	4	577	1	0	0	0	0	0	0	0	1	6355	639	23	1		1	GFRA2	8	21563505	Silent	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	3990172	21563505	124800517	42	33818											
ARFGEF1	10565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	68178355	68178355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	68178355	G	A	68178355	3	1	577	1	0	0	0	0	1	0	0	0	852	1294	45	2	3644	2	ARFGEF1	8	68178355	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	46614850	68178355	78185667	43	33819											
ZFPM2	23414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	106814187	106814187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	106814187	T	G	106814187	3	3	577	1	0	0	0	0	1	0	0	0	17670	1435	50	5	1907	5	ZFPM2	8	106814187	Missense_Mutation	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	38635832	106814187	39549835	44	33820											
NDUFB9	4715	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125562076	125562076	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	125562076	T	A	125562076	2	1	577	1	0	0	0	0	0	0	0	1	10295	1683	59	5		5	NDUFB9	8	125562076	Silent	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	18747889	125562076	20801946	45	33821											
KDM4C	23081	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	7013979	7013979	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	7013979	G	A	7013979	2	1	577	1	0	0	0	0	0	0	0	1	8137	1020	36	2		2	KDM4C	9	7013979	Silent	SNP	G	TCGA-CZ-5459-01A-01D-1501-10		7013979	134199452	46	33822											
UBAP2	55833	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	33941709	33941709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	33941709	G	T	33941709	3	4	577	1	0	0	0	0	1	0	0	0	16849	1319	46	4	1548	4	UBAP2	9	33941709	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	26927730	33941709	107271722	47	33823											
RC3H2	54542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125639776	125639776	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	125639776	A	-	125639776	7	5	577	1	0	1	0	1	0	0	0	0	13180	127	5	0	2406	0	RC3H2	9	125639776	Frame_Shift_Del	DEL	A	TCGA-CZ-5459-01A-01D-1501-10	91698067	125639776	15573655	48	33824											
TALDO1	6888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	763505	763505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	763505	C	A	763505	3	1	577	1	0	0	0	0	1	0	0	0	15555	623	22	4	641	4	TALDO1	11	763505	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10		763505	134243011	49	33825											
OR4C16	219428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55339616	55339616	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	55339616	A	T	55339616	3	4	577	1	0	0	0	0	1	0	0	0	11056	362	13	5	15	5	OR4C16	11	55339616	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	54576111	55339616	79666900	50	33826											
PACS1	55690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65988247	65988247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	65988247	C	T	65988247	3	4	577	1	0	0	0	0	1	0	0	0	11379	594	21	2	1218	2	PACS1	11	65988247	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	10648631	65988247	69018269	51	33827											
MYEOV	26579	broad.mit.edu;ucsc.edu	37	11	69063609	69063609	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	C	69063609	C	C	69063609	3	2	577	1	0	0	0	0	1	0	0	0	10032	1000	35	4	698	4	MYEOV	11	69063609	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	3075362	69063609	65942907	52	33828											
HYOU1	10525	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118922276	118922276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	118922276	C	T	118922276	3	4	577	1	0	0	0	0	1	0	0	0	7477	652	23	1	1655	1	HYOU1	11	118922276	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	49858667	118922276	16084240	53	33829											
OR8B8	26493	hgsc.bcm.edu;ucsc.edu	37	11	124310727	124310727	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	124310727	A	-	124310727	7	5	577	1	0	1	0	1	0	0	0	0	11237	127	5	0	683	0	OR8B8	11	124310727	Frame_Shift_Del	DEL	A	TCGA-CZ-5459-01A-01D-1501-10	5388451	124310727	10695789	54	33830											
PFDN5	5204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53691896	53691896	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	53691896	T	G	53691896	3	3	577	1	0	0	0	0	1	0	0	0	11765	1435	50	5	368	5	PFDN5	12	53691896	Missense_Mutation	SNP	T	TCGA-CZ-5459-01A-01D-1501-10		53691896	80159999	55	33831											
KITLG	4254	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	88910211	88910211	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	C	88910211	G	C	88910211	3	2	577	1	0	0	0	0	1	0	0	0	8337	933	33	4	421	4	KITLG	12	88910211	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	35218315	88910211	44941684	56	33832											
CIT	11113	broad.mit.edu	37	12	120128175	120128175	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	120128175	A	A	120128175	2	1	577	1	0	0	0	0	0	0	0	1	3440	1335	47	2		2	CIT	12	120128175	Silent	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	31217964	120128175	13723720	57	33833											
KDM2B	84678	hgsc.bcm.edu;ucsc.edu	37	12	121972425	121972429	+	Frame_Shift_Del	DEL	ACCAA	ACCAA	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	ACCAA	ACCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	121972429	ACCAA	-	121972425	7	5	577	1	0	1	0	1	0	0	0	0	8132	391	14	0	3376	0	KDM2B	12	121972425	Frame_Shift_Del	DEL	ACCAA	TCGA-CZ-5459-01A-01D-1501-10	1844250	121972425	11879470	58	33834											
KNTC1	9735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123034395	123034395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	123034395	A	G	123034395	3	3	577	1	0	0	0	0	1	0	0	0	8435	130	5	3	1116	3	KNTC1	12	123034395	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	1061970	123034395	10817500	59	33835											
NALCN	259232	broad.mit.edu;hgsc.bcm.edu	37	13	101763549	101763549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	101763549	C	T	101763549	3	4	577	1	0	0	0	0	1	0	0	0	10155	661	23	1	3099	1	NALCN	13	101763549	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10		101763549	13406329	60	33836											
METTL3	56339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	21967473	21967473	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	21967473	C	G	21967473	3	3	577	1	0	0	0	0	1	0	0	0	9508	855	30	4	259	4	METTL3	14	21967473	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10		21967473	85382067	61	33837											
MDGA2	161357	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	47600945	47600945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	47600945	C	T	47600945	3	4	577	1	0	0	0	0	1	0	0	0	9414	594	21	2	2232	2	MDGA2	14	47600945	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	25633472	47600945	59748595	62	33838											
PLEKHH1	57475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	68047714	68047714	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	68047714	T	A	68047714	2	1	577	1	0	0	0	0	0	0	0	1	12083	1567	55	5		5	PLEKHH1	14	68047714	Silent	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	20446769	68047714	39301826	63	33839											
HEATR4	399671	broad.mit.edu	37	14	73989820	73989820	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	73989820	-	-	73989820	7	5	577	1	0	1	0	1	0	0	0	0	7037	1363	47	0		0	HEATR4	14	73989820	Frame_Shift_Del	DEL	G	TCGA-CZ-5459-01A-01D-1501-10	5942106	73989820	33359720	64	33840											
THBS1	7057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	39882215	39882215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	39882215	C	A	39882215	3	1	577	1	0	0	0	0	1	0	0	0	15865	564	20	4	2182	4	THBS1	15	39882215	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10		39882215	62649177	65	33841											
TP53BP1	7158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43748191	43748191	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	43748191	G	T	43748191	4	4	577	1	0	0	0	0	0	1	0	0	16395	1294	45	4	3386	4	TP53BP1	15	43748191	Nonsense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	3865976	43748191	58783201	66	33842											
FBN1	2200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	48718059	48718059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	48718059	T	G	48718059	3	3	577	1	0	0	0	0	1	0	0	0	5709	1406	49	5	1440	5	FBN1	15	48718059	Missense_Mutation	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	4969868	48718059	53813333	67	33843											
TMOD3	29766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52161517	52161517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	52161517	C	A	52161517	3	1	577	1	0	0	0	0	1	0	0	0	16247	710	25	4	236	4	TMOD3	15	52161517	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	3443458	52161517	50369875	68	33844											
PPL	5493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4940260	4940260	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	4940260	T	G	4940260	2	3	577	1	0	0	0	0	0	0	0	1	12344	1509	53	5		5	PPL	16	4940260	Silent	SNP	T	TCGA-CZ-5459-01A-01D-1501-10		4940260	85414493	69	33845	438	2									
PPL	5493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	4940261	4940261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	4940261	A	G	4940261	3	3	577	1	0	0	0	0	1	0	0	0	12344	420	15	3	3053	3	PPL	16	4940261	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	1	4940261	85414492	70	33846	438	2									
PPL	5493	broad.mit.edu;ucsc.edu	37	16	4940294	4940294	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	4940294	G	G	4940294	3	3	577	1	0	0	0	0	1	0	0	0	12344	246	9	3	3086	3	PPL	16	4940294	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	33	4940294	85414459	71	33847											
TMED6	146456	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69385482	69385482	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	69385482	A	T	69385482	3	4	577	1	0	0	0	0	1	0	0	0	16020	101	4	5	563	5	TMED6	16	69385482	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	64445188	69385482	20969271	72	33848											
PHLPP2	23035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71712811	71712811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	71712811	G	T	71712811	3	4	577	1	0	0	0	0	1	0	0	0	11862	1174	41	4	2904	4	PHLPP2	16	71712811	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	2327329	71712811	18641942	73	33849											
CLDN7	1366	broad.mit.edu	37	17	7163812	7163812	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	7163812	T	T	7163812	3	4	577	1	0	0	0	0	1	0	0	0	3492	710	25	2	122	2	CLDN7	17	7163812	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10		7163812	74031398	74	33850											
SMCR8	140775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18219366	18219366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	18219366	A	G	18219366	3	3	577	1	0	0	0	0	1	0	0	0	14805	101	4	3	265	3	SMCR8	17	18219366	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	11055554	18219366	62975844	75	33851											
RDM1	201299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34257695	34257695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	34257695	T	A	34257695	3	1	577	1	0	0	0	0	1	0	0	0	13210	1551	54	5	916	5	RDM1	17	34257695	Missense_Mutation	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	16038329	34257695	46937515	76	33852											
TOP2A	7153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38545832	38545832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	38545832	G	A	38545832	3	1	577	1	0	0	0	0	1	0	0	0	16377	942	33	2	64	2	TOP2A	17	38545832	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	4288137	38545832	42649378	77	33853											
KRT12	3859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39021170	39021171	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	39021171	-	T	39021170	7	5	577	1	0	1	1	0	0	0	0	0	8456	333	12	0	813	0	KRT12	17	39021170	Frame_Shift_Ins	INS	-	TCGA-CZ-5459-01A-01D-1501-10	475338	39021170	42174040	78	33854											
GHDC	84514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40342212	40342212	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	40342212	A	G	40342212	2	3	577	1	0	0	0	0	0	0	0	1	6376	330	12	3		3	GHDC	17	40342212	Silent	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	1321042	40342212	40852998	79	33855											
ACSF2	80221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48540792	48540792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	48540792	C	A	48540792	3	1	577	1	0	0	0	0	1	0	0	0	175	680	24	4	955	4	ACSF2	17	48540792	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	8198580	48540792	32654418	80	33856											
KCNH6	81033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61613155	61613155	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	61613155	G	A	61613155	2	1	577	1	0	0	0	0	0	0	0	1	8043	1074	38	1		1	KCNH6	17	61613155	Silent	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	13072363	61613155	19582055	81	33857											
ERN1	2081	hgsc.bcm.edu;ucsc.edu	37	17	62122827	62122827	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	62122827	T	-	62122827	7	5	577	1	0	1	0	1	0	0	0	0	5239	1493	52	0	400	0	ERN1	17	62122827	Frame_Shift_Del	DEL	T	TCGA-CZ-5459-01A-01D-1501-10	509672	62122827	19072383	82	33858											
CCDC46	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	64059172	64059172	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	64059172	A	T	64059172	3	4	577	1	0	0	0	0	1	0	0	0	2819	43	2	5	2118	5	CCDC46	17	64059172	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	1936345	64059172	17136038	83	33859											
SRP68	6730	broad.mit.edu;hgsc.bcm.edu	37	17	74042206	74042206	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	74042206	C	T	74042206	2	4	577	1	0	0	0	0	0	0	0	1	15168	622	22	2		2	SRP68	17	74042206	Silent	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	9983034	74042206	7153004	84	33860											
SLC16A3	9123	broad.mit.edu;ucsc.edu	37	17	80194627	80194627	+	Silent	SNP	G	C	C	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	C	80194627	C	C	80194627	2	2	577	1	0	0	0	0	0	0	0	1	14422	1277	45	4		4	SLC16A3	17	80194627	Silent	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	6152421	80194627	1000583	85	33861											
ABHD3	171586	hgsc.bcm.edu;ucsc.edu	37	18	19239274	19239274	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	19239274	A	-	19239274	7	5	577	1	0	1	0	1	0	0	0	0	83	126	5	0	546	0	ABHD3	18	19239274	Frame_Shift_Del	DEL	A	TCGA-CZ-5459-01A-01D-1501-10		19239274	58837974	86	33862											
CHST9	83539	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	24496329	24496329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	24496329	A	G	24496329	3	3	577	1	0	0	0	0	1	0	0	0	3413	275	10	3	109	3	CHST9	18	24496329	Missense_Mutation	SNP	A	TCGA-CZ-5459-01A-01D-1501-10	5257055	24496329	53580919	87	33863											
ME2	4200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	48422198	48422198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	48422198	C	T	48422198	3	4	577	1	0	0	0	0	1	0	0	0	9425	855	30	2	10	2	ME2	18	48422198	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	23925869	48422198	29655050	88	33864											
C3	718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6697533	6697533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	6697533	C	T	6697533	3	4	577	1	0	0	0	0	1	0	0	0	2206	710	25	2	2457	2	C3	19	6697533	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10		6697533	52431450	89	33865											
ZNF546	339327	hgsc.bcm.edu;ucsc.edu	37	19	40519822	40519824	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	40519824	ATC	-	40519822	7	5	577	1	0	1	0	1	0	0	0	0	17990	98	4	0	663	0	ZNF546	19	40519822	In_Frame_Del	DEL	ATC	TCGA-CZ-5459-01A-01D-1501-10	33822289	40519822	18609161	90	33866											
CEACAM6	4680	broad.mit.edu	37	19	42260806	42260806	+	Silent	SNP	C	T	T	rs138986236	alternate_allele	TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	42260806	T	T	42260806	2	4	577	1	0	0	0	0	0	0	0	1	3198	610	22	2		2	CEACAM6	19	42260806	Silent	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	1740984	42260806	16868177	91	33867											
CCDC61	729440	broad.mit.edu;ucsc.edu	37	19	46511489	46511489	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	46511489	T	T	46511489	3	4	577	1	0	0	0	0	1	0	0	0	2834	652	23	1	674	1	CCDC61	19	46511489	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	4250683	46511489	12617494	92	33868											
ZNF304	57343	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	57865150	57865150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	57865150	C	T	57865150	3	4	577	1	0	0	0	0	1	0	0	0	17845	681	24	2	97	2	ZNF304	19	57865150	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	11353661	57865150	1263833	93	33869											
C20orf79	0	hgsc.bcm.edu	37	20	18794843	18794843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	18794843	T	-	18794843	7	5	577	1	0	1	0	1	0	0	0	0	2121	1596	56	0	386	0	C20orf79	20	18794843	Frame_Shift_Del	DEL	T	TCGA-CZ-5459-01A-01D-1501-10		18794843	44230677	94	33870											
FOXA2	3170	broad.mit.edu	37	20	22562794	22562794	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	22562794	T	T	22562794	2	4	577	1	0	0	0	0	0	0	0	1	5997	639	23	1		1	FOXA2	20	22562794	Silent	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	3767951	22562794	40462726	95	33871											
C20orf117	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	35414908	35414908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	35414908	C	A	35414908	3	1	577	1	0	0	0	0	1	0	0	0	2085	739	26	4	85	4	C20orf117	20	35414908	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10	12852114	35414908	27610612	96	33872											
BRWD1	54014	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	40559338	40559338	+	Missense_Mutation	SNP	C	C	A	rs140524582		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	40559338	C	A	40559338	3	1	577	1	0	0	0	0	1	0	0	0	1527	478	17	4	389	4	BRWD1	21	40559338	Missense_Mutation	SNP	C	TCGA-CZ-5459-01A-01D-1501-10		40559338	7570557	97	33873											
PDXK	8566	hgsc.bcm.edu;ucsc.edu	37	21	45163648	45163649	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	-	45163649	TG	-	45163648	7	5	577	1	0	1	0	1	0	0	0	0	11704	1800	63	0	305	0	PDXK	21	45163648	Frame_Shift_Del	DEL	TG	TCGA-CZ-5459-01A-01D-1501-10	4604310	45163648	2966247	98	33874											
MMP11	4320	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24122848	24122848	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	24122848	G	T	24122848	4	4	577	1	0	0	0	0	0	1	0	0	9657	943	33	4	576	4	MMP11	22	24122848	Nonsense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10		24122848	27181718	99	33875											
TMPRSS6	164656	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	37469600	37469600	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	37469600	G	A	37469600	2	1	577	1	0	0	0	0	0	0	0	1	16263	1136	40	1		1	TMPRSS6	22	37469600	Silent	SNP	G	TCGA-CZ-5459-01A-01D-1501-10	13346752	37469600	13834966	100	33876											
TMPRSS6	164656	broad.mit.edu	37	22	37499264	37499264	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	A	37499264	A	A	37499264	3	1	577	1	0	0	0	0	1	0	0	0	16263	1406	49	5	2282	5	TMPRSS6	22	37499264	Missense_Mutation	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	29664	37499264	13805302	101	33877											
ARSH	347527	broad.mit.edu	37	X	2928175	2928175	+	Missense_Mutation	SNP	G	T	T	rs143754233	byfrequency;alternate_allele	TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	T	2928175	T	T	2928175	3	4	577	1	0	0	0	0	1	0	0	0	993	1116	39	4	203	4	ARSH	23	2928175	Missense_Mutation	SNP	G	TCGA-CZ-5459-01A-01D-1501-10		2928175	152342385	102	33878											
NKRF	55922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	118724240	118724240	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5459-01A-01D-1501-10	TCGA-CZ-5459-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5711cdaa-7368-4a4f-8639-5df60a2fedac	c1fea46c-46f7-4801-9572-53b18bf75f56	G	118724240	T	G	118724240	3	3	577	1	0	0	0	0	1	0	0	0	10454	1812	63	5	928	5	NKRF	23	118724240	Missense_Mutation	SNP	T	TCGA-CZ-5459-01A-01D-1501-10	115796065	118724240	36546320	103	33879											
ZMPSTE24	10269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40726535	40726535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	40726535	C	T	40726535	3	4	578	1	0	0	0	0	1	0	0	0	17710	826	29	2	154	2	ZMPSTE24	1	40726535	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10		40726535	208524086	1	33880											
PKN2	5586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	89236126	89236126	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	89236126	A	T	89236126	3	4	578	1	0	0	0	0	1	0	0	0	11987	188	7	5	610	5	PKN2	1	89236126	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	48509591	89236126	160014495	2	33881											
SLC16A4	9122	hgsc.bcm.edu;ucsc.edu	37	1	110921820	110921820	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	110921820	A	T	110921820	3	4	578	1	0	0	0	0	1	0	0	0	14423	188	7	5	794	5	SLC16A4	1	110921820	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	21685694	110921820	138328801	3	33882											
DHX9	1660	hgsc.bcm.edu;ucsc.edu	37	1	182825719	182825719	+	RNA	SNP	T	T	C	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	C	182825719	T	C	182825719	1	2	578	0	1	0	0	0	0	0	0	0	4518	1711	59	3		3	DHX9	1	182825719	RNA	SNP	T	TCGA-CZ-5460-01A-01D-1501-10	71903899	182825719	66424902	4	33883											
OR2W5	441932	broad.mit.edu	37	1	247655361	247655361	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	247655361	A	A	247655361	3	1	578	1	0	0	0	0	1	0	0	0	11041	1203	42	2	934	2	OR2W5	1	247655361	Missense_Mutation	SNP	G	TCGA-CZ-5460-01A-01D-1501-10	64829642	247655361	1595260	5	33884											
SLC30A6	55676	broad.mit.edu	37	2	32422862	32422862	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	32422862	T	T	32422862	3	4	578	1	0	0	0	0	1	0	0	0	14572	797	28	2	670	2	SLC30A6	2	32422862	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10		32422862	210776511	6	33885											
IL18RAP	8807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	103068553	103068553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	103068553	A	G	103068553	3	3	578	1	0	0	0	0	1	0	0	0	7655	188	7	3	1750	3	IL18RAP	2	103068553	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	70645691	103068553	140130820	7	33886											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191593	10191593	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	10191593	A	T	10191593	4	4	578	1	0	0	0	0	0	1	0	0	17174	247	9	5	596	5	VHL	3	10191593	Nonsense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10		10191593	187830837	8	33887											
GOLGA4	2803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	37343778	37343778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	37343778	C	A	37343778	3	1	578	1	0	0	0	0	1	0	0	0	6562	595	21	4	1297	4	GOLGA4	3	37343778	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	27152185	37343778	160678652	9	33888											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52584765	52584766	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	-	-	-	TT	-	-	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	TT	52584766	-	TT	52584765	7	5	578	1	0	1	1	0	0	0	0	0	11498	1386	48	0	403	0	PBRM1	3	52584765	Frame_Shift_Ins	INS	-	TCGA-CZ-5460-01A-01D-1501-10	15240987	52584765	145437665	10	33889											
CASR	846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	122002936	122002936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	122002936	C	T	122002936	3	4	578	1	0	0	0	0	1	0	0	0	2684	507	18	2	2187	2	CASR	3	122002936	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	69418171	122002936	76019494	11	33890											
MUC4	4585	hgsc.bcm.edu	37	3	195508415	195508462	+	In_Frame_Del	DEL	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	-	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	-	195508462	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	-	195508415	7	5	578	1	0	1	0	1	0	0	0	0	9985	1203	42	0		0	MUC4	3	195508415	In_Frame_Del	DEL	GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT	TCGA-CZ-5460-01A-01D-1501-10	73505479	195508415	2514015	12	33891											
MUC4	4585	broad.mit.edu	37	3	195511888	195511888	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	195511888	G	G	195511888	3	3	578	1	0	0	0	0	1	0	0	0	9985	507	18	4		4	MUC4	3	195511888	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	3473	195511888	2510542	13	33892											
INPP4B	8821	hgsc.bcm.edu;ucsc.edu	37	4	143067033	143067034	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	143067034	-	T	143067033	7	5	578	1	0	1	1	0	0	0	0	0	7760	680	24	0	1130	0	INPP4B	4	143067033	Frame_Shift_Ins	INS	-	TCGA-CZ-5460-01A-01D-1501-10		143067033	48087243	14	33893											
FGG	2266	broad.mit.edu	37	4	155527857	155527857	+	Missense_Mutation	SNP	C	T	T	rs192482410	by1000genomes;alternate_allele	TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	155527857	T	T	155527857	3	4	578	1	0	0	0	0	1	0	0	0	5877	695	24	2	259	2	FGG	4	155527857	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	12460824	155527857	35626419	15	33894											
AGA	175	broad.mit.edu;ucsc.edu	37	4	178357480	178357480	+	Silent	SNP	T	A	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	178357480	A	A	178357480	2	1	578	1	0	0	0	0	0	0	0	1	365	1654	58	5		5	AGA	4	178357480	Silent	SNP	T	TCGA-CZ-5460-01A-01D-1501-10	22829623	178357480	12796796	16	33895											
CWC27	10283	broad.mit.edu;ucsc.edu	37	5	64082386	64082386	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	64082386	A	A	64082386	2	1	578	1	0	0	0	0	0	0	0	1	4072	1223	43	2		2	CWC27	5	64082386	Silent	SNP	G	TCGA-CZ-5460-01A-01D-1501-10		64082386	116832874	17	33896											
G3BP1	10146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	151179550	151179550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	151179550	G	A	151179550	3	1	578	1	0	0	0	0	1	0	0	0	6148	1174	41	2	974	2	G3BP1	5	151179550	Missense_Mutation	SNP	G	TCGA-CZ-5460-01A-01D-1501-10	87097164	151179550	29735710	18	33897											
C6orf62	81688	broad.mit.edu	37	6	24719011	24719011	+	5'UTR	SNP	G	T	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	24719011	T	T	24719011	1	4	578	0	1	0	0	0	0	0	0	0	2370	1305	45	4		4	C6orf62	6	24719011	5'UTR	SNP	G	TCGA-CZ-5460-01A-01D-1501-10		24719011	146396056	19	33898											
DPCR1	135656	hgsc.bcm.edu;ucsc.edu	37	6	30918543	30918545	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	-	30918545	TTG	-	30918543	7	5	578	1	0	1	0	1	0	0	0	0	4714	1490	52	0	2308	0	DPCR1	6	30918543	In_Frame_Del	DEL	TTG	TCGA-CZ-5460-01A-01D-1501-10	6199532	30918543	140196524	20	33899											
GJA10	84694	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90604723	90604723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	90604723	A	G	90604723	3	3	578	1	0	0	0	0	1	0	0	0	6408	449	16	3	538	3	GJA10	6	90604723	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	59686180	90604723	80510344	21	33900											
PLG	5340	hgsc.bcm.edu;ucsc.edu	37	6	161155095	161155095	+	Silent	SNP	C	C	T	rs113153850		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	161155095	C	T	161155095	2	4	578	1	0	0	0	0	0	0	0	1	12093	547	19	1		1	PLG	6	161155095	Silent	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	70550372	161155095	9959972	22	33901											
AHR	196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	17379447	17379448	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	C	17379448	-	C	17379447	7	5	578	1	0	1	1	0	0	0	0	0	416	962	34	0	2036	0	AHR	7	17379447	Frame_Shift_Ins	INS	-	TCGA-CZ-5460-01A-01D-1501-10		17379447	141759216	23	33902											
TAX1BP1	8887	hgsc.bcm.edu	37	7	27856058	27856059	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	27856059	-	A	27856058	7	5	578	1	0	1	1	0	0	0	0	0	15606	711	25	0	1905	0	TAX1BP1	7	27856058	Frame_Shift_Ins	INS	-	TCGA-CZ-5460-01A-01D-1501-10	10476611	27856058	131282605	24	33903											
IFNA1	3439	broad.mit.edu	37	9	21440985	21440985	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	21440985	A	A	21440985	3	1	578	1	0	0	0	0	1	0	0	0	7538	971	34	2	481	2	IFNA1	9	21440985	Missense_Mutation	SNP	G	TCGA-CZ-5460-01A-01D-1501-10		21440985	119772446	25	33904											
FRMPD1	22844	broad.mit.edu;ucsc.edu	37	9	37744613	37744613	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	37744613	T	T	37744613	3	4	578	1	0	0	0	0	1	0	0	0	6064	304	11	5	2642	5	FRMPD1	9	37744613	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	16303628	37744613	103468818	26	33905											
PRUNE2	158471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	79438564	79438564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	79438564	A	G	79438564	3	3	578	1	0	0	0	0	1	0	0	0	12651	159	6	3	8582	3	PRUNE2	9	79438564	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	41693951	79438564	61774867	27	33906	439	2									
PRUNE2	158471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	79438565	79438565	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	79438565	C	G	79438565	3	3	578	1	0	0	0	0	1	0	0	0	12651	478	17	4	8583	4	PRUNE2	9	79438565	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	1	79438565	61774866	28	33907	439	2									
WNK2	65268	broad.mit.edu;ucsc.edu	37	9	95997112	95997112	+	Silent	SNP	C	T	T	rs113308587	bycluster;byfrequency;by1000genomes	TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	95997112	T	T	95997112	2	4	578	1	0	0	0	0	0	0	0	1	17390	639	23	1		1	WNK2	9	95997112	Silent	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	16558547	95997112	45216319	29	33908											
ABCA1	19	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	107573110	107573110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	107573110	C	A	107573110	3	1	578	1	0	0	0	0	1	0	0	0	28	856	30	4	2727	4	ABCA1	9	107573110	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	11575998	107573110	33640321	30	33909											
SFMBT2	57713	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	7217995	7217995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	7217995	T	A	7217995	3	1	578	1	0	0	0	0	1	0	0	0	14171	1838	64	5	763	5	SFMBT2	10	7217995	Missense_Mutation	SNP	T	TCGA-CZ-5460-01A-01D-1501-10		7217995	128316752	31	33910	440	2									
SFMBT2	57713	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	7217996	7217996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	7217996	T	G	7217996	3	3	578	1	0	0	0	0	1	0	0	0	14171	1783	62	5	764	5	SFMBT2	10	7217996	Missense_Mutation	SNP	T	TCGA-CZ-5460-01A-01D-1501-10	1	7217996	128316751	32	33911	440	2									
ANKRD1	27063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	92679944	92679944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	92679944	C	A	92679944	3	1	578	1	0	0	0	0	1	0	0	0	637	912	32	4	802	4	ANKRD1	10	92679944	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	85461948	92679944	42854803	33	33912											
GPAM	57678	broad.mit.edu;ucsc.edu	37	10	113932775	113932775	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	C	113932775	C	C	113932775	3	2	578	1	0	0	0	0	1	0	0	0	6595	1464	51	3	1936	3	GPAM	10	113932775	Missense_Mutation	SNP	T	TCGA-CZ-5460-01A-01D-1501-10	21252831	113932775	21601972	34	33913											
SPTBN2	6712	broad.mit.edu	37	11	66463961	66463961	+	Silent	SNP	C	A	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	66463961	A	A	66463961	2	1	578	1	0	0	0	0	0	0	0	1	15132	639	23	4		4	SPTBN2	11	66463961	Silent	SNP	C	TCGA-CZ-5460-01A-01D-1501-10		66463961	68542555	35	33914											
CLPB	81570	broad.mit.edu;ucsc.edu	37	11	72012970	72012970	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	72012970	A	A	72012970	2	1	578	1	0	0	0	0	0	0	0	1	3553	1190	42	2		2	CLPB	11	72012970	Silent	SNP	G	TCGA-CZ-5460-01A-01D-1501-10	5549009	72012970	62993546	36	33915											
CACNA1C	775	broad.mit.edu	37	12	2595320	2595320	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	2595320	T	T	2595320	3	4	578	1	0	0	0	0	1	0	0	0	2542	710	25	2	830	2	CACNA1C	12	2595320	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10		2595320	131256575	37	33916											
TAS2R50	259296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	11138584	11138584	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	11138584	C	T	11138584	2	4	578	1	0	0	0	0	0	0	0	1	15596	825	29	2		2	TAS2R50	12	11138584	Silent	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	8543264	11138584	122713311	38	33917											
ARID2	196528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	46245726	46245726	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	-	46245726	G	-	46245726	7	5	578	1	0	1	0	1	0	0	0	0	915	1001	35	0	3878	0	ARID2	12	46245726	Frame_Shift_Del	DEL	G	TCGA-CZ-5460-01A-01D-1501-10	35107142	46245726	87606169	39	33918											
PTPRR	5801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	71033004	71033004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	71033004	C	T	71033004	3	4	578	1	0	0	0	0	1	0	0	0	12823	710	25	2	43	2	PTPRR	12	71033004	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	24787278	71033004	62818891	40	33919											
WSB2	55884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	118481141	118481141	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	118481141	T	A	118481141	3	1	578	1	0	0	0	0	1	0	0	0	17417	1493	52	5	1018	5	WSB2	12	118481141	Missense_Mutation	SNP	T	TCGA-CZ-5460-01A-01D-1501-10	47448137	118481141	15370754	41	33920	441	2									
WSB2	55884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	118481144	118481144	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	118481144	T	A	118481144	3	1	578	1	0	0	0	0	1	0	0	0	17417	1841	64	5	1021	5	WSB2	12	118481144	Missense_Mutation	SNP	T	TCGA-CZ-5460-01A-01D-1501-10	3	118481144	15370751	42	33921	441	2									
OR4N2	390429	broad.mit.edu	37	14	20296164	20296164	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	20296164	G	G	20296164	3	3	578	1	0	0	0	0	1	0	0	0	11084	72	3	3	559	3	OR4N2	14	20296164	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10		20296164	87053376	43	33922											
OSGEP	55644	broad.mit.edu;ucsc.edu	37	14	20916148	20916148	+	Silent	SNP	A	G	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	20916148	G	G	20916148	2	3	578	1	0	0	0	0	0	0	0	1	11294	175	7	3		3	OSGEP	14	20916148	Silent	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	619984	20916148	86433392	44	33923											
SERPINA10	51156	broad.mit.edu;ucsc.edu	37	14	94756558	94756560	+	In_Frame_Del	DEL	TGA	-	-	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	-	94756560	-	-	94756558	7	5	578	1	0	1	0	1	0	0	0	0	14100	1821	63	0	977	0	SERPINA10	14	94756558	In_Frame_Del	DEL	TGA	TCGA-CZ-5460-01A-01D-1501-10	73840410	94756558	12592982	45	33924											
SERPINA1	5265	broad.mit.edu;ucsc.edu	37	14	94844824	94844824	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	C	94844824	C	C	94844824	3	2	578	1	0	0	0	0	1	0	0	0	14099	1000	35	4	41	4	SERPINA1	14	94844824	Missense_Mutation	SNP	G	TCGA-CZ-5460-01A-01D-1501-10	88266	94844824	12504716	46	33925											
DUOX1	53905	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	45434244	45434244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	45434244	G	A	45434244	3	1	578	1	0	0	0	0	1	0	0	0	4802	1290	45	2	1810	2	DUOX1	15	45434244	Missense_Mutation	SNP	G	TCGA-CZ-5460-01A-01D-1501-10		45434244	57097148	47	33926											
PYGO1	26108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	55838992	55838992	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	55838992	A	G	55838992	2	3	578	1	0	0	0	0	0	0	0	1	12876	214	8	3		3	PYGO1	15	55838992	Silent	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	10404748	55838992	46692400	48	33927											
ARHGDIG	398	broad.mit.edu	37	16	332799	332799	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	-	332799	-	-	332799	7	5	578	1	0	1	0	1	0	0	0	0	892	991	35	0	685	0	ARHGDIG	16	332799	Frame_Shift_Del	DEL	G	TCGA-CZ-5460-01A-01D-1501-10		332799	90021954	49	33928											
ACSM2A	123876	broad.mit.edu	37	16	20486684	20486684	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	20486684	G	G	20486684	3	3	578	1	0	0	0	0	1	0	0	0	183	289	10	3	917	3	ACSM2A	16	20486684	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	20153885	20486684	69868069	50	33929											
PDPR	55066	broad.mit.edu	37	16	70180077	70180077	+	Silent	SNP	T	C	C	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	C	70180077	C	C	70180077	2	2	578	1	0	0	0	0	0	0	0	1	11696	1567	55	3		3	PDPR	16	70180077	Silent	SNP	T	TCGA-CZ-5460-01A-01D-1501-10	49693393	70180077	20174676	51	33930											
NUDT7	283927	broad.mit.edu;ucsc.edu	37	16	77775489	77775489	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	77775489	G	G	77775489	3	3	578	1	0	0	0	0	1	0	0	0	10751	1821	63	5	373	5	NUDT7	16	77775489	Missense_Mutation	SNP	T	TCGA-CZ-5460-01A-01D-1501-10	7595412	77775489	12579264	52	33931											
SPDYE4	388333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	8658873	8658873	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	8658873	C	T	8658873	2	4	578	1	0	0	0	0	0	0	0	1	15043	523	19	1		1	SPDYE4	17	8658873	Silent	SNP	C	TCGA-CZ-5460-01A-01D-1501-10		8658873	72536337	53	33932											
ZNF287	57336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	16456102	16456102	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	16456102	A	T	16456102	3	4	578	1	0	0	0	0	1	0	0	0	17837	420	15	5	935	5	ZNF287	17	16456102	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10	7797229	16456102	64739108	54	33933											
GDPD1	284161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57334552	57334552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	57334552	C	T	57334552	3	4	578	1	0	0	0	0	1	0	0	0	6330	565	20	2	455	2	GDPD1	17	57334552	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	40878450	57334552	23860658	55	33934											
ZNF100	163227	broad.mit.edu;hgsc.bcm.edu	37	19	21909967	21909967	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	-	21909967	A	-	21909967	7	5	578	1	0	1	0	1	0	0	0	0	17725	362	13	0	485	0	ZNF100	19	21909967	Frame_Shift_Del	DEL	A	TCGA-CZ-5460-01A-01D-1501-10		21909967	37219016	56	33935											
LRFN1	57622	broad.mit.edu	37	19	39805558	39805558	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	39805558	T	T	39805558	3	4	578	1	0	0	0	0	1	0	0	0	8944	768	27	1	1904	1	LRFN1	19	39805558	Missense_Mutation	SNP	C	TCGA-CZ-5460-01A-01D-1501-10	17895591	39805558	19323425	57	33936											
B3GNT8	374907	broad.mit.edu;ucsc.edu	37	19	41932579	41932579	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	A	41932579	A	A	41932579	2	1	578	1	0	0	0	0	0	0	0	1	1263	1256	44	2		2	B3GNT8	19	41932579	Silent	SNP	G	TCGA-CZ-5460-01A-01D-1501-10	2127021	41932579	17196404	58	33937											
NPAS1	4861	broad.mit.edu	37	19	47539293	47539293	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	-	47539293	-	-	47539293	7	5	578	1	0	1	0	1	0	0	0	0	10569	1335	47	0	612	0	NPAS1	19	47539293	Frame_Shift_Del	DEL	G	TCGA-CZ-5460-01A-01D-1501-10	5606714	47539293	11589690	59	33938											
ZNF831	128611	broad.mit.edu	37	20	57766859	57766860	+	Frame_Shift_Del	DEL	GG	-	-	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	-	57766860	-	-	57766859	7	5	578	1	0	1	0	1	0	0	0	0	18197	1000	35	0	787	0	ZNF831	20	57766859	Frame_Shift_Del	DEL	GG	TCGA-CZ-5460-01A-01D-1501-10		57766859	5258661	60	33939											
BRWD1	54014	broad.mit.edu;ucsc.edu	37	21	40568695	40568695	+	Silent	SNP	T	C	C	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	C	40568695	C	C	40568695	2	2	578	1	0	0	0	0	0	0	0	1	1527	1664	58	3		3	BRWD1	21	40568695	Silent	SNP	T	TCGA-CZ-5460-01A-01D-1501-10		40568695	7561200	61	33940											
MID1IP1	58526	broad.mit.edu	37	X	38664279	38664279	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	G	38664279	G	G	38664279	3	3	578	1	0	0	0	0	1	0	0	0	9584	43	2	3	82	3	MID1IP1	23	38664279	Missense_Mutation	SNP	A	TCGA-CZ-5460-01A-01D-1501-10		38664279	116606281	62	33941											
MAGEA5	4104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151283746	151283746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5460-01A-01D-1501-10	TCGA-CZ-5460-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a6de1551-2a1a-4a43-ba7f-caa436f5f6dd	ce595188-1b2d-46f1-b1d0-a44d2294d9a0	T	151283746	G	T	151283746	3	4	578	1	0	0	0	0	1	0	0	0	9176	1252	44	4	111	4	MAGEA5	23	151283746	Missense_Mutation	SNP	G	TCGA-CZ-5460-01A-01D-1501-10	112619467	151283746	3986814	63	33942											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39893209	39893209	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	39893209	A	T	39893209	3	4	579	1	0	0	0	0	1	0	0	0	9151	159	6	5	16590	5	MACF1	1	39893209	Missense_Mutation	SNP	A	TCGA-CZ-5461-01A-01D-1501-10		39893209	209357412	1	33943											
ABCA4	24	broad.mit.edu	37	1	94514511	94514511	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	94514511	C	C	94514511	3	2	579	1	0	0	0	0	1	0	0	0	34	159	6	5	4297	5	ABCA4	1	94514511	Missense_Mutation	SNP	A	TCGA-CZ-5461-01A-01D-1501-10	54621302	94514511	154736110	2	33944											
CELSR2	1952	broad.mit.edu;hgsc.bcm.edu	37	1	109794802	109794802	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	109794802	A	T	109794802	3	4	579	1	0	0	0	0	1	0	0	0	3224	246	9	5	2103	5	CELSR2	1	109794802	Missense_Mutation	SNP	A	TCGA-CZ-5461-01A-01D-1501-10	15280291	109794802	139455819	3	33945											
FMO5	2330	hgsc.bcm.edu;ucsc.edu	37	1	146656103	146656103	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	-	146656103	A	-	146656103	7	5	579	1	0	1	0	1	0	0	0	0	5965	130	5	0	35	0	FMO5	1	146656103	Frame_Shift_Del	DEL	A	TCGA-CZ-5461-01A-01D-1501-10	36861301	146656103	102594518	4	33946											
NPR1	4881	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153659728	153659728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	153659728	C	T	153659728	3	4	579	1	0	0	0	0	1	0	0	0	10601	838	29	2	2038	2	NPR1	1	153659728	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	7003625	153659728	95590893	5	33947											
OTOF	9381	broad.mit.edu	37	2	26717855	26717855	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	26717855	T	T	26717855	2	4	579	1	0	0	0	0	0	0	0	1	11310	564	20	2		2	OTOF	2	26717855	Silent	SNP	C	TCGA-CZ-5461-01A-01D-1501-10		26717855	216481518	6	33948											
C2orf3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	75893178	75893178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	G	75893178	A	G	75893178	3	3	579	1	0	0	0	0	1	0	0	0	2164	405	14	3	248	3	C2orf3	2	75893178	Missense_Mutation	SNP	A	TCGA-CZ-5461-01A-01D-1501-10	49175323	75893178	167306195	7	33949											
TTN	7273	hgsc.bcm.edu	37	2	179506014	179506016	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	-	179506016	TTC	-	179506014	7	5	579	1	0	1	0	1	0	0	0	0	16747	1722	60	0	67678	0	TTN	2	179506014	In_Frame_Del	DEL	TTC	TCGA-CZ-5461-01A-01D-1501-10	103612836	179506014	63693359	8	33950											
RUFY4	285180	hgsc.bcm.edu	37	2	218935328	218935328	+	RNA	SNP	C	C	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	218935328	C	A	218935328	1	1	579	0	1	0	0	0	0	0	0	0	13754	609	21	4		4	RUFY4	2	218935328	RNA	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	39429314	218935328	24264045	9	33951											
RQCD1	9125	hgsc.bcm.edu;ucsc.edu	37	2	219447710	219447710	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	-	219447710	A	-	219447710	7	5	579	1	0	1	0	1	0	0	0	0	13683	449	16	0	231	0	RQCD1	2	219447710	Frame_Shift_Del	DEL	A	TCGA-CZ-5461-01A-01D-1501-10	512382	219447710	23751663	10	33952	442	2									
RQCD1	9125	hgsc.bcm.edu	37	2	219447712	219447712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	219447712	C	T	219447712	3	4	579	1	0	0	0	0	1	0	0	0	13683	855	30	2	233	2	RQCD1	2	219447712	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	2	219447712	23751661	11	33953	442	2									
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47144880	47144880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	47144880	G	A	47144880	3	1	579	1	0	0	0	0	1	0	0	0	14144	1058	37	1	2881	1	SETD2	3	47144880	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10		47144880	150877550	12	33954											
CELSR3	1951	broad.mit.edu;ucsc.edu	37	3	48682160	48682160	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	48682160	T	T	48682160	3	4	579	1	0	0	0	0	1	0	0	0	3225	991	35	4	1904	4	CELSR3	3	48682160	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	1537280	48682160	149340270	13	33955											
PBRM1	55193	broad.mit.edu;ucsc.edu	37	3	52712615	52712615	+	Splice_Site	SNP	T	C	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	52712615	C	C	52712615	5	2	579	1	0	0	0	0	0	0	1	0	11498	1536	53	3	4879	3	PBRM1	3	52712615	Splice_Site	SNP	T	TCGA-CZ-5461-01A-01D-1501-10	4030455	52712615	145309815	14	33956											
LXN	56925	broad.mit.edu	37	3	158390257	158390257	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	158390257	A	A	158390257	3	1	579	1	0	0	0	0	1	0	0	0	9096	1116	39	1	681	1	LXN	3	158390257	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	105677642	158390257	39632173	15	33957											
MRPS18C	51023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	84379580	84379580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	84379580	C	A	84379580	3	1	579	1	0	0	0	0	1	0	0	0	9837	479	17	4	242	4	MRPS18C	4	84379580	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10		84379580	106774696	16	33958											
EDIL3	10085	broad.mit.edu;ucsc.edu	37	5	83402565	83402565	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	83402565	A	A	83402565	4	1	579	1	0	0	0	0	0	1	0	0	4917	603	21	4	913	4	EDIL3	5	83402565	Nonsense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10		83402565	97512695	17	33959											
MEGF10	84466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	126774247	126774247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	126774247	T	C	126774247	3	2	579	1	0	0	0	0	1	0	0	0	9467	1522	53	3	2283	3	MEGF10	5	126774247	Missense_Mutation	SNP	T	TCGA-CZ-5461-01A-01D-1501-10	43371682	126774247	54141013	18	33960											
BPHL	670	hgsc.bcm.edu;ucsc.edu	37	6	3152714	3152714	+	RNA	SNP	T	T	G	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	G	3152714	T	G	3152714	1	3	579	0	1	0	0	0	0	0	0	0	1491	1624	56	5		5	BPHL	6	3152714	RNA	SNP	T	TCGA-CZ-5461-01A-01D-1501-10		3152714	167962353	19	33961											
COL21A1	81578	broad.mit.edu;hgsc.bcm.edu	37	6	55933843	55933843	+	Splice_Site	SNP	C	C	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	55933843	C	A	55933843	5	1	579	1	0	0	0	0	0	0	1	0	3682	521	18	4	817	4	COL21A1	6	55933843	Splice_Site	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	52781129	55933843	115181224	20	33962											
TTK	7272	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	80744856	80744856	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	80744856	A	C	80744856	3	2	579	1	0	0	0	0	1	0	0	0	16732	333	12	5	1823	5	TTK	6	80744856	Missense_Mutation	SNP	A	TCGA-CZ-5461-01A-01D-1501-10	24811013	80744856	90370211	21	33963											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152565703	152565703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	152565703	T	C	152565703	3	2	579	1	0	0	0	0	1	0	0	0	15457	1580	55	3	6969	3	SYNE1	6	152565703	Missense_Mutation	SNP	T	TCGA-CZ-5461-01A-01D-1501-10	71820847	152565703	18549364	22	33964											
TRIM50	135892	broad.mit.edu	37	7	72732707	72732707	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	72732707	A	A	72732707	3	1	579	1	0	0	0	0	1	0	0	0	16538	1623	56	5	747	5	TRIM50	7	72732707	Missense_Mutation	SNP	T	TCGA-CZ-5461-01A-01D-1501-10		72732707	86405956	23	33965											
POMZP3	22932	broad.mit.edu	37	7	76247559	76247559	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	76247559	T	T	76247559	3	4	579	1	0	0	0	0	1	0	0	0	12254	1203	42	4	296	4	POMZP3	7	76247559	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	3514852	76247559	82891104	24	33966											
SDR16C5	195814	broad.mit.edu;ucsc.edu	37	8	57228627	57228627	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	G	57228627	G	G	57228627	3	3	579	1	0	0	0	0	1	0	0	0	13984	768	27	4	673	4	SDR16C5	8	57228627	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10		57228627	89135395	25	33967											
TP53INP1	94241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	95952145	95952145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	95952145	G	T	95952145	3	4	579	1	0	0	0	0	1	0	0	0	16400	1000	35	4	340	4	TP53INP1	8	95952145	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	38723518	95952145	50411877	26	33968											
C8orf37	157657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	96272706	96272706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	96272706	G	T	96272706	3	4	579	1	0	0	0	0	1	0	0	0	2425	1000	35	4	341	4	C8orf37	8	96272706	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	320561	96272706	50091316	27	33969											
FBXO43	286151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	101146397	101146398	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	101146398	-	T	101146397	7	5	579	1	0	1	1	0	0	0	0	0	5759	449	16	0	264	0	FBXO43	8	101146397	Frame_Shift_Ins	INS	-	TCGA-CZ-5461-01A-01D-1501-10	4873691	101146397	45217625	28	33970											
TG	7038	broad.mit.edu;ucsc.edu	37	8	134107431	134107431	+	Silent	SNP	C	A	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	134107431	A	A	134107431	2	1	579	1	0	0	0	0	0	0	0	1	15825	842	30	4		4	TG	8	134107431	Silent	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	32961034	134107431	12256591	29	33971											
PLEC	5339	broad.mit.edu;ucsc.edu	37	8	144991673	144991673	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	144991673	A	A	144991673	4	1	579	1	0	0	0	0	0	1	0	0	12059	864	30	4	1331	4	PLEC	8	144991673	Nonsense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	10884242	144991673	1372349	30	33972											
LPPR1	54886	hgsc.bcm.edu;ucsc.edu	37	9	104048510	104048510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	104048510	G	T	104048510	3	4	579	1	0	0	0	0	1	0	0	0	8931	942	33	4	387	4	LPPR1	9	104048510	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10		104048510	37164921	31	33973											
SUV39H2	79723	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	14941677	14941677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	G	14941677	A	G	14941677	3	3	579	1	0	0	0	0	1	0	0	0	15425	101	4	3	815	3	SUV39H2	10	14941677	Missense_Mutation	SNP	A	TCGA-CZ-5461-01A-01D-1501-10		14941677	120593070	32	33974											
ARHGAP21	57584	broad.mit.edu	37	10	25010766	25010766	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	G	25010766	G	G	25010766	3	3	579	1	0	0	0	0	1	0	0	0	871	695	24	4	5913	4	ARHGAP21	10	25010766	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	10069089	25010766	110523981	33	33975											
RAB18	22931	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	27822869	27822869	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	27822869	G	C	27822869	3	2	579	1	0	0	0	0	1	0	0	0	12916	1029	36	4	413	4	RAB18	10	27822869	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	2812103	27822869	107711878	34	33976											
ANUBL1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	46121548	46121548	+	Missense_Mutation	SNP	C	C	T	rs149725835		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	46121548	C	T	46121548	3	4	579	1	0	0	0	0	1	0	0	0	713	652	23	1	476	1	ANUBL1	10	46121548	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	18298679	46121548	89413199	35	33977											
FAM21A	387680	broad.mit.edu;hgsc.bcm.edu	37	10	51829431	51829431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	G	51829431	A	G	51829431	3	3	579	1	0	0	0	0	1	0	0	0	5544	101	4	3	261	3	FAM21A	10	51829431	Missense_Mutation	SNP	A	TCGA-CZ-5461-01A-01D-1501-10	5707883	51829431	83705316	36	33978											
SGPL1	8879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	72631655	72631655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	72631655	T	C	72631655	3	2	579	1	0	0	0	0	1	0	0	0	14231	1667	58	3	1009	3	SGPL1	10	72631655	Missense_Mutation	SNP	T	TCGA-CZ-5461-01A-01D-1501-10	20802224	72631655	62903092	37	33979											
VWCE	220001	broad.mit.edu;hgsc.bcm.edu	37	11	61048292	61048292	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	G	61048292	C	G	61048292	3	3	579	1	0	0	0	0	1	0	0	0	17257	796	28	4	1716	4	VWCE	11	61048292	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10		61048292	73958224	38	33980											
DLG2	1740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	83544667	83544667	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	83544667	T	A	83544667	3	1	579	1	0	0	0	0	1	0	0	0	4557	1580	55	5	1313	5	DLG2	11	83544667	Missense_Mutation	SNP	T	TCGA-CZ-5461-01A-01D-1501-10	22496375	83544667	51461849	39	33981											
PHLDB1	23187	broad.mit.edu;hgsc.bcm.edu	37	11	118484605	118484605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	118484605	G	T	118484605	3	4	579	1	0	0	0	0	1	0	0	0	11858	1348	47	4	56	4	PHLDB1	11	118484605	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	34939938	118484605	16521911	40	33982											
CDON	50937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	125891274	125891274	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	125891274	T	A	125891274	3	1	579	1	0	0	0	0	1	0	0	0	3172	1783	62	5	3648	5	CDON	11	125891274	Missense_Mutation	SNP	T	TCGA-CZ-5461-01A-01D-1501-10	7406669	125891274	9115242	41	33983											
CACNA1C	775	broad.mit.edu	37	12	2794921	2794921	+	Missense_Mutation	SNP	G	A	A	rs71458011		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	2794921	A	A	2794921	3	1	579	1	0	0	0	0	1	0	0	0	2542	1059	37	1	6476	1	CACNA1C	12	2794921	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10		2794921	131056974	42	33984											
TAS2R8	50836	broad.mit.edu	37	12	10959049	10959049	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	10959049	C	C	10959049	3	2	579	1	0	0	0	0	1	0	0	0	15599	1628	57	3	401	3	TAS2R8	12	10959049	Missense_Mutation	SNP	T	TCGA-CZ-5461-01A-01D-1501-10	8164128	10959049	122892846	43	33985											
HDAC7	51564	broad.mit.edu;ucsc.edu	37	12	48185052	48185052	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	G	48185052	G	G	48185052	3	3	579	1	0	0	0	0	1	0	0	0	7019	507	18	4	1046	4	HDAC7	12	48185052	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	37226003	48185052	85666843	44	33986											
IKZF4	64375	hgsc.bcm.edu;ucsc.edu	37	12	56428493	56428493	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	-	56428493	A	-	56428493	7	5	579	1	0	1	0	1	0	0	0	0	7624	304	11	0	1166	0	IKZF4	12	56428493	Frame_Shift_Del	DEL	A	TCGA-CZ-5461-01A-01D-1501-10	8243441	56428493	77423402	45	33987											
PIWIL1	9271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	130847573	130847573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	130847573	G	A	130847573	3	1	579	1	0	0	0	0	1	0	0	0	11964	1319	46	2	2145	2	PIWIL1	12	130847573	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	74419080	130847573	3004322	46	33988											
CSNK1A1L	122011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	37679100	37679100	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	37679100	T	C	37679100	2	2	579	1	0	0	0	0	0	0	0	1	3953	1606	56	3		3	CSNK1A1L	13	37679100	Silent	SNP	T	TCGA-CZ-5461-01A-01D-1501-10		37679100	77490778	47	33989											
LIG4	3981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	108861063	108861063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	108861063	C	T	108861063	3	4	579	1	0	0	0	0	1	0	0	0	8790	565	20	2	185	2	LIG4	13	108861063	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	71181963	108861063	6308815	48	33990											
RTL1	388015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	101350371	101350371	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	101350371	C	T	101350371	4	4	579	1	0	0	0	0	0	1	0	0	13737	595	21	2	3325	2	RTL1	14	101350371	Nonsense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10		101350371	5999169	49	33991											
DYNC1H1	1778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	102452696	102452696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	102452696	G	A	102452696	3	1	579	1	0	0	0	0	1	0	0	0	4843	1116	39	1	2164	1	DYNC1H1	14	102452696	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	1102325	102452696	4896844	50	33992											
TMOD2	29767	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52098676	52098676	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	52098676	C	T	52098676	4	4	579	1	0	0	0	0	0	1	0	0	16246	528	19	1	1009	1	TMOD2	15	52098676	Nonsense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10		52098676	50432716	51	33993											
NTRK3	4916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	88423631	88423631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	88423631	C	T	88423631	3	4	579	1	0	0	0	0	1	0	0	0	10715	768	27	1	323	1	NTRK3	15	88423631	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	36324955	88423631	14107761	52	33994											
PGPEP1L	145814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	99512702	99512702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	99512702	C	T	99512702	3	4	579	1	0	0	0	0	1	0	0	0	11811	768	27	1	275	1	PGPEP1L	15	99512702	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	11089071	99512702	3018690	53	33995											
ACSM5	54988	broad.mit.edu;hgsc.bcm.edu	37	16	20451155	20451155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	20451155	T	C	20451155	3	2	579	1	0	0	0	0	1	0	0	0	187	1522	53	3	1616	3	ACSM5	16	20451155	Missense_Mutation	SNP	T	TCGA-CZ-5461-01A-01D-1501-10		20451155	69903598	54	33996											
CDH16	1014	broad.mit.edu;ucsc.edu	37	16	66950224	66950224	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	66950224	T	T	66950224	3	4	579	1	0	0	0	0	1	0	0	0	3103	507	18	2	2311	2	CDH16	16	66950224	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	46499069	66950224	23404529	55	33997											
PMFBP1	83449	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	72158692	72158692	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	72158692	C	A	72158692	4	1	579	1	0	0	0	0	0	1	0	0	12141	922	32	4	540	4	PMFBP1	16	72158692	Nonsense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	5208468	72158692	18196061	56	33998											
WFDC1	58189	broad.mit.edu	37	16	84328656	84328656	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	84328656	A	A	84328656	3	1	579	1	0	0	0	0	1	0	0	0	17358	594	21	4	81	4	WFDC1	16	84328656	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	12169964	84328656	6026097	57	33999											
NCOR1	9611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	15965052	15965052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	15965052	C	A	15965052	3	1	579	1	0	0	0	0	1	0	0	0	10242	506	18	4	1818	4	NCOR1	17	15965052	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10		15965052	65230158	58	34000											
GGNBP2	79893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	34935726	34935726	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	34935726	G	T	34935726	2	4	579	1	0	0	0	0	0	0	0	1	6366	1277	45	4		4	GGNBP2	17	34935726	Silent	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	18970674	34935726	46259484	59	34001											
ATP6V0A1	535	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40639358	40639358	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	40639358	C	T	40639358	2	4	579	1	0	0	0	0	0	0	0	1	1168	581	21	2		2	ATP6V0A1	17	40639358	Silent	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	5703632	40639358	40555852	60	34002											
NBR1	4077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41343513	41343513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	41343513	C	T	41343513	3	4	579	1	0	0	0	0	1	0	0	0	10207	826	29	2	1022	2	NBR1	17	41343513	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	704155	41343513	39851697	61	34003											
RGS9	8787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	63154436	63154436	+	Missense_Mutation	SNP	G	G	T	rs115440141	byfrequency;by1000genomes;alternate_allele	TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	63154436	G	T	63154436	3	4	579	1	0	0	0	0	1	0	0	0	13326	1145	40	4	188	4	RGS9	17	63154436	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	21810923	63154436	18040774	62	34004											
STXBP2	6813	broad.mit.edu;ucsc.edu	37	19	7712373	7712373	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	7712373	A	A	7712373	3	1	579	1	0	0	0	0	1	0	0	0	15365	1059	37	1	1742	1	STXBP2	19	7712373	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10		7712373	51416610	63	34005											
ZFP14	57677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36832152	36832152	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	36832152	T	C	36832152	2	2	579	1	0	0	0	0	0	0	0	1	17651	1780	62	3		3	ZFP14	19	36832152	Silent	SNP	T	TCGA-CZ-5461-01A-01D-1501-10	29119779	36832152	22296831	64	34006											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39028524	39028524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	39028524	G	C	39028524	3	2	579	1	0	0	0	0	1	0	0	0	13781	933	33	4	11947	4	RYR1	19	39028524	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	2196372	39028524	20100459	65	34007											
KLK13	26085	hgsc.bcm.edu;ucsc.edu	37	19	51559915	51559915	+	Missense_Mutation	SNP	C	C	T	rs150383488		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	51559915	C	T	51559915	3	4	579	1	0	0	0	0	1	0	0	0	8408	536	19	1	74	1	KLK13	19	51559915	Missense_Mutation	SNP	C	TCGA-CZ-5461-01A-01D-1501-10	12531391	51559915	7569068	66	34008											
USP29	57663	broad.mit.edu;ucsc.edu	37	19	57642541	57642541	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	57642541	A	A	57642541	3	1	579	1	0	0	0	0	1	0	0	0	17071	1232	43	2	2500	2	USP29	19	57642541	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	6082626	57642541	1486442	67	34009											
GCFC1	0	broad.mit.edu;ucsc.edu	37	21	34142136	34142136	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	A	34142136	A	A	34142136	3	1	579	1	0	0	0	0	1	0	0	0	6296	1294	45	2	2478	2	GCFC1	21	34142136	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10		34142136	13987759	68	34010											
CCNB3	85417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	50053811	50053811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	T	50053811	G	T	50053811	3	4	579	1	0	0	0	0	1	0	0	0	2916	1357	47	4	2656	4	CCNB3	23	50053811	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10		50053811	105216749	69	34011											
PHF6	84295	broad.mit.edu;ucsc.edu	37	X	133551239	133551239	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	C	133551239	C	C	133551239	3	2	579	1	0	0	0	0	1	0	0	0	11845	1377	48	4	1010	4	PHF6	23	133551239	Missense_Mutation	SNP	G	TCGA-CZ-5461-01A-01D-1501-10	83497428	133551239	21719321	70	34012											
RPS4Y1	6192	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	Y	2709666	2709666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5461-01A-01D-1501-10	TCGA-CZ-5461-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79feee74-7b14-48d9-9be7-8d7671c79c83	278cfc27-dcdc-4b5e-a12b-56730002f95d	G	2709666	A	G	2709666	3	3	579	1	0	0	0	0	1	0	0	0	13659	217	8	3	3	3	RPS4Y1	24	2709666	Missense_Mutation	SNP	A	TCGA-CZ-5461-01A-01D-1501-10		2709666	56663900	71	34013											
WDR65	149465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43647495	43647495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	43647495	G	T	43647495	3	4	580	1	0	0	0	0	1	0	0	0	17328	1058	37	4	454	4	WDR65	1	43647495	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10		43647495	205603126	1	34014											
BCL9	607	broad.mit.edu;ucsc.edu	37	1	147091598	147091598	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	G	147091598	G	G	147091598	3	3	580	1	0	0	0	0	1	0	0	0	1381	652	23	4	1655	4	BCL9	1	147091598	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	103444103	147091598	102159023	2	34015											
INSRR	3645	broad.mit.edu;ucsc.edu	37	1	156812296	156812296	+	Missense_Mutation	SNP	C	T	T	rs138327752	bycluster;byfrequency;by1000genomes	TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	156812296	T	T	156812296	3	4	580	1	0	0	0	0	1	0	0	0	7781	536	19	1	781	1	INSRR	1	156812296	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	9720698	156812296	92438325	3	34016											
SPTA1	6708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158618345	158618345	+	Missense_Mutation	SNP	C	C	T	rs148714399	by1000genomes	TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	158618345	C	T	158618345	3	4	580	1	0	0	0	0	1	0	0	0	15128	884	31	1	3699	1	SPTA1	1	158618345	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	1806049	158618345	90632276	4	34017											
RGL1	23179	broad.mit.edu;ucsc.edu	37	1	183891372	183891372	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	G	183891372	G	G	183891372	3	3	580	1	0	0	0	0	1	0	0	0	13289	14	1	3	2192	3	RGL1	1	183891372	Missense_Mutation	SNP	A	TCGA-CZ-5462-01A-01D-1501-10	25273027	183891372	65359249	5	34018											
HMCN1	83872	broad.mit.edu;ucsc.edu	37	1	185953431	185953431	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	185953431	T	T	185953431	3	4	580	1	0	0	0	0	1	0	0	0	7227	913	32	2	2995	2	HMCN1	1	185953431	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	2062059	185953431	63297190	6	34019											
DISP1	84976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223179160	223179160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	223179160	G	T	223179160	3	4	580	1	0	0	0	0	1	0	0	0	4541	1000	35	4	4447	4	DISP1	1	223179160	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	37225729	223179160	26071461	7	34020											
SLC9A4	389015	broad.mit.edu;ucsc.edu	37	2	103120043	103120043	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	103120043	A	A	103120043	3	1	580	1	0	0	0	0	1	0	0	0	14729	1841	64	5	867	5	SLC9A4	2	103120043	Missense_Mutation	SNP	T	TCGA-CZ-5462-01A-01D-1501-10		103120043	140079330	8	34021											
NCKAP5	344148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	133540313	133540313	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	133540313	G	A	133540313	2	1	580	1	0	0	0	0	0	0	0	1	10230	962	34	2		2	NCKAP5	2	133540313	Silent	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	30420270	133540313	109659060	9	34022											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179406075	179406075	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	179406075	T	A	179406075	3	1	580	1	0	0	0	0	1	0	0	0	16747	1464	51	5	10302	5	TTN	2	179406075	Missense_Mutation	SNP	T	TCGA-CZ-5462-01A-01D-1501-10	45865762	179406075	63793298	10	34023											
TTN	7273	broad.mit.edu;ucsc.edu	37	2	179516238	179516238	+	Silent	SNP	A	T	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	179516238	T	T	179516238	2	4	580	1	0	0	0	0	0	0	0	1	16747	233	9	5		5	TTN	2	179516238	Silent	SNP	A	TCGA-CZ-5462-01A-01D-1501-10	110163	179516238	63683135	11	34024											
BARD1	580	broad.mit.edu;hgsc.bcm.edu	37	2	215632207	215632207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	215632207	C	T	215632207	3	4	580	1	0	0	0	0	1	0	0	0	1312	492	17	2	790	2	BARD1	2	215632207	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	36115969	215632207	27567166	12	34025											
CXCR6	10663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	45988547	45988547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	45988547	C	T	45988547	3	4	580	1	0	0	0	0	1	0	0	0	4097	913	32	2	576	2	CXCR6	3	45988547	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10		45988547	152033883	13	34026											
IL20RB	53833	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	136710849	136710849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	C	136710849	T	C	136710849	3	2	580	1	0	0	0	0	1	0	0	0	7676	1406	49	3	619	3	IL20RB	3	136710849	Missense_Mutation	SNP	T	TCGA-CZ-5462-01A-01D-1501-10	90722302	136710849	61311581	14	34027											
MUC4	4585	broad.mit.edu	37	3	195506839	195506839	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	195506839	T	T	195506839	3	4	580	1	0	0	0	0	1	0	0	0	9985	1261	44	4		4	MUC4	3	195506839	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	58795990	195506839	2515591	15	34028											
AFAP1	60312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	7783208	7783208	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	7783208	C	A	7783208	2	1	580	1	0	0	0	0	0	0	0	1	353	465	17	4		4	AFAP1	4	7783208	Silent	SNP	C	TCGA-CZ-5462-01A-01D-1501-10		7783208	183371068	16	34029											
PCDH7	5099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	30724917	30724917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	30724917	G	T	30724917	3	4	580	1	0	0	0	0	1	0	0	0	11523	1261	44	4	1875	4	PCDH7	4	30724917	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	22941709	30724917	160429359	17	34030											
EPHA5	2044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	66197808	66197808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	66197808	G	T	66197808	3	4	580	1	0	0	0	0	1	0	0	0	5172	942	33	4	230	4	EPHA5	4	66197808	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	35472891	66197808	124956468	18	34031											
TMPRSS11D	9407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	68725379	68725379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	68725379	G	A	68725379	3	1	580	1	0	0	0	0	1	0	0	0	16253	1059	37	1	1266	1	TMPRSS11D	4	68725379	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	2527571	68725379	122428897	19	34032											
DMP1	1758	broad.mit.edu	37	4	88583134	88583134	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	88583134	T	T	88583134	2	4	580	1	0	0	0	0	0	0	0	1	4585	477	17	2		2	DMP1	4	88583134	Silent	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	19857755	88583134	102571142	20	34033											
INTU	27152	broad.mit.edu;ucsc.edu	37	4	128632123	128632123	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	128632123	A	A	128632123	3	1	580	1	0	0	0	0	1	0	0	0	7793	711	25	4	2479	4	INTU	4	128632123	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	40048989	128632123	62522153	21	34034											
ANKRD34B	340120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	79855596	79855596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	79855596	G	T	79855596	3	4	580	1	0	0	0	0	1	0	0	0	663	1368	48	4	1305	4	ANKRD34B	5	79855596	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10		79855596	101059664	22	34035											
RASA1	5921	broad.mit.edu;hgsc.bcm.edu	37	5	86564707	86564707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	86564707	G	A	86564707	3	1	580	1	0	0	0	0	1	0	0	0	13073	1232	43	2	441	2	RASA1	5	86564707	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	6709111	86564707	94350553	23	34036											
KIF4B	285643	broad.mit.edu;hgsc.bcm.edu	37	5	154394373	154394373	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	154394373	C	T	154394373	2	4	580	1	0	0	0	0	0	0	0	1	8311	581	21	2		2	KIF4B	5	154394373	Silent	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	67829666	154394373	26520887	24	34037											
UBR2	23304	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	42637945	42637945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	42637945	T	A	42637945	3	1	580	1	0	0	0	0	1	0	0	0	16914	1812	63	5	4281	5	UBR2	6	42637945	Missense_Mutation	SNP	T	TCGA-CZ-5462-01A-01D-1501-10		42637945	128477122	25	34038											
ASCC3	10973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	101110412	101110412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	101110412	C	T	101110412	3	4	580	1	0	0	0	0	1	0	0	0	1033	521	18	2	4433	2	ASCC3	6	101110412	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	58472467	101110412	70004655	26	34039											
HACE1	57531	broad.mit.edu;ucsc.edu	37	6	105233140	105233140	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	105233140	A	A	105233140	4	1	580	1	0	0	0	0	0	1	0	0	6947	922	32	4	1652	4	HACE1	6	105233140	Nonsense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	4122728	105233140	65881927	27	34040											
LAMA2	3908	hgsc.bcm.edu;ucsc.edu	37	6	129419358	129419358	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	-	129419358	C	-	129419358	7	5	580	1	0	1	0	1	0	0	0	0	8613	855	30	0	451	0	LAMA2	6	129419358	Frame_Shift_Del	DEL	C	TCGA-CZ-5462-01A-01D-1501-10	24186218	129419358	41695709	28	34041											
ETV1	2115	broad.mit.edu;ucsc.edu	37	7	13975450	13975450	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	13975450	A	A	13975450	3	1	580	1	0	0	0	0	1	0	0	0	5279	1174	41	2	1024	2	ETV1	7	13975450	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10		13975450	145163213	29	34042											
AMPH	273	broad.mit.edu;ucsc.edu	37	7	38431539	38431539	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	38431539	A	A	38431539	3	1	580	1	0	0	0	0	1	0	0	0	588	1319	46	2	411	2	AMPH	7	38431539	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	24456089	38431539	120707124	30	34043											
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	48314043	48314043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	48314043	G	A	48314043	3	1	580	1	0	0	0	0	1	0	0	0	31	1000	35	2	4675	2	ABCA13	7	48314043	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	9882504	48314043	110824620	31	34044											
GTF2I	2969	broad.mit.edu	37	7	74167453	74167453	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	74167453	A	A	74167453	3	1	580	1	0	0	0	0	1	0	0	0	6874	1725	60	5	2695	5	GTF2I	7	74167453	Missense_Mutation	SNP	T	TCGA-CZ-5462-01A-01D-1501-10	25853410	74167453	84971210	32	34045											
ZAN	7455	hgsc.bcm.edu;ucsc.edu	37	7	100386875	100386875	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	-	100386875	A	-	100386875	7	5	580	1	0	1	0	1	0	0	0	0	17525	117	5	0	7412	0	ZAN	7	100386875	Frame_Shift_Del	DEL	A	TCGA-CZ-5462-01A-01D-1501-10	26219422	100386875	58751788	33	34046											
PIK3CG	5294	broad.mit.edu;ucsc.edu	37	7	106509653	106509653	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	106509653	A	A	106509653	3	1	580	1	0	0	0	0	1	0	0	0	11923	506	18	4	1649	4	PIK3CG	7	106509653	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	6122778	106509653	52629010	34	34047											
PLXNA4	91584	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	131982903	131982903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	131982903	C	A	131982903	3	1	580	1	0	0	0	0	1	0	0	0	12129	855	30	4	4350	4	PLXNA4	7	131982903	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	25473250	131982903	27155760	35	34048											
CHD7	55636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	61732614	61732614	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	61732614	A	T	61732614	3	4	580	1	0	0	0	0	1	0	0	0	3332	101	4	5	2692	5	CHD7	8	61732614	Missense_Mutation	SNP	A	TCGA-CZ-5462-01A-01D-1501-10		61732614	84631408	36	34049											
NOV	4856	broad.mit.edu;ucsc.edu	37	8	120435157	120435157	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	120435157	A	A	120435157	3	1	580	1	0	0	0	0	1	0	0	0	10560	1522	53	5	877	5	NOV	8	120435157	Missense_Mutation	SNP	T	TCGA-CZ-5462-01A-01D-1501-10	58702543	120435157	25928865	37	34050											
TMEM71	137835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	133764200	133764200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	133764200	C	T	133764200	3	4	580	1	0	0	0	0	1	0	0	0	16212	652	23	1	770	1	TMEM71	8	133764200	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	13329043	133764200	12599822	38	34051											
ZFAT	57623	broad.mit.edu	37	8	135521987	135521987	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	135521987	A	A	135521987	4	1	580	1	0	0	0	0	0	1	0	0	17644	1124	39	1	372	1	ZFAT	8	135521987	Nonsense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	1757787	135521987	10842035	39	34052											
DMRT3	58524	hgsc.bcm.edu;ucsc.edu	37	9	990589	990589	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	990589	C	T	990589	4	4	580	1	0	0	0	0	0	1	0	0	4589	876	31	1	1009	1	DMRT3	9	990589	Nonsense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10		990589	140222842	40	34053											
SYK	6850	broad.mit.edu;ucsc.edu	37	9	93636536	93636536	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	93636536	A	A	93636536	2	1	580	1	0	0	0	0	0	0	0	1	15450	1132	40	1		1	SYK	9	93636536	Silent	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	92645947	93636536	47576895	41	34054											
AKNA	80709	broad.mit.edu;ucsc.edu	37	9	117139678	117139678	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	117139678	T	T	117139678	3	4	580	1	0	0	0	0	1	0	0	0	463	739	26	2	3990	2	AKNA	9	117139678	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	23503142	117139678	24073753	42	34055											
ECHDC3	79746	broad.mit.edu;ucsc.edu	37	10	11797428	11797428	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	G	11797428	G	G	11797428	3	3	580	1	0	0	0	0	1	0	0	0	4897	594	21	4	426	4	ECHDC3	10	11797428	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10		11797428	123737319	43	34056											
SFTPD	6441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	81702178	81702178	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	81702178	G	A	81702178	2	1	580	1	0	0	0	0	0	0	0	1	14206	1306	46	2		2	SFTPD	10	81702178	Silent	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	69904750	81702178	53832569	44	34057											
CPXM2	119587	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	125526488	125526488	+	Splice_Site	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	125526488	C	T	125526488	5	4	580	1	0	0	0	0	0	0	1	0	3840	521	18	2	810	2	CPXM2	10	125526488	Splice_Site	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	43824310	125526488	10008259	45	34058											
C11orf41	0	hgsc.bcm.edu;ucsc.edu	37	11	33565134	33565134	+	Silent	SNP	C	C	T	rs78046896	bycluster;by1000genomes	TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	33565134	C	T	33565134	2	4	580	1	0	0	0	0	0	0	0	1	1642	581	21	2		2	C11orf41	11	33565134	Silent	SNP	C	TCGA-CZ-5462-01A-01D-1501-10		33565134	101441382	46	34059											
PRPF19	27339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60671329	60671329	+	Silent	SNP	A	A	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	60671329	A	T	60671329	2	4	580	1	0	0	0	0	0	0	0	1	12574	407	15	5		5	PRPF19	11	60671329	Silent	SNP	A	TCGA-CZ-5462-01A-01D-1501-10	27106195	60671329	74335187	47	34060											
DDB1	1642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61081631	61081631	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	61081631	T	A	61081631	2	1	580	1	0	0	0	0	0	0	0	1	4325	1538	54	5		5	DDB1	11	61081631	Silent	SNP	T	TCGA-CZ-5462-01A-01D-1501-10	410302	61081631	73924885	48	34061	443	2									
DDB1	1642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	61081632	61081632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	61081632	C	T	61081632	3	4	580	1	0	0	0	0	1	0	0	0	4325	855	30	2	1838	2	DDB1	11	61081632	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	1	61081632	73924884	49	34062	443	2									
ANO1	55107	hgsc.bcm.edu;ucsc.edu	37	11	70017025	70017025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	70017025	G	A	70017025	3	1	580	1	0	0	0	0	1	0	0	0	695	1087	38	1	2316	1	ANO1	11	70017025	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	8935393	70017025	64989491	50	34063											
BIRC2	329	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	102221673	102221673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	G	102221673	A	G	102221673	3	3	580	1	0	0	0	0	1	0	0	0	1435	86	3	3	1000	3	BIRC2	11	102221673	Missense_Mutation	SNP	A	TCGA-CZ-5462-01A-01D-1501-10	32204648	102221673	32784843	51	34064											
RAPGEF3	10411	broad.mit.edu;ucsc.edu	37	12	48137448	48137448	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	C	48137448	C	C	48137448	3	2	580	1	0	0	0	0	1	0	0	0	13058	1464	51	3	1125	3	RAPGEF3	12	48137448	Missense_Mutation	SNP	T	TCGA-CZ-5462-01A-01D-1501-10		48137448	85714447	52	34065											
MYCBP2	23077	hgsc.bcm.edu	37	13	77714290	77714290	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	-	77714290	T	-	77714290	7	5	580	1	0	1	0	1	0	0	0	0	10025	1490	52	0	6758	0	MYCBP2	13	77714290	Frame_Shift_Del	DEL	T	TCGA-CZ-5462-01A-01D-1501-10		77714290	37455588	53	34066											
FAM70B	0	broad.mit.edu;hgsc.bcm.edu	37	13	114514719	114514719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	114514719	G	A	114514719	3	1	580	1	0	0	0	0	1	0	0	0	5613	1087	38	1	858	1	FAM70B	13	114514719	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	36800429	114514719	655159	54	34067											
SEC23A	10484	hgsc.bcm.edu;ucsc.edu	37	14	39502467	39502467	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	-	39502467	T	-	39502467	7	5	580	1	0	1	0	1	0	0	0	0	14004	1722	60	0	27	0	SEC23A	14	39502467	Frame_Shift_Del	DEL	T	TCGA-CZ-5462-01A-01D-1501-10		39502467	67847073	55	34068											
PCNX	22990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	71514655	71514655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	C	71514655	A	C	71514655	3	2	580	1	0	0	0	0	1	0	0	0	11598	304	11	5	4378	5	PCNX	14	71514655	Missense_Mutation	SNP	A	TCGA-CZ-5462-01A-01D-1501-10	32012188	71514655	35834885	56	34069											
ADAM10	102	broad.mit.edu;ucsc.edu	37	15	58925453	58925453	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	58925453	T	T	58925453	3	4	580	1	0	0	0	0	1	0	0	0	234	1000	35	4	1160	4	ADAM10	15	58925453	Missense_Mutation	SNP	G	TCGA-CZ-5462-01A-01D-1501-10		58925453	43605939	57	34070											
ACSBG1	23205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	78526760	78526760	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	78526760	G	A	78526760	2	1	580	1	0	0	0	0	0	0	0	1	173	1194	42	2		2	ACSBG1	15	78526760	Silent	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	19601307	78526760	24004632	58	34071											
ANKRD11	29123	hgsc.bcm.edu;ucsc.edu	37	16	89349043	89349043	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	-	89349043	C	-	89349043	7	5	580	1	0	1	0	1	0	0	0	0	639	507	18	0	4104	0	ANKRD11	16	89349043	Frame_Shift_Del	DEL	C	TCGA-CZ-5462-01A-01D-1501-10		89349043	1005710	59	34072											
CTNS	1497	broad.mit.edu;ucsc.edu	37	17	3563239	3563239	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	3563239	A	A	3563239	3	1	580	1	0	0	0	0	1	0	0	0	4023	680	24	4	974	4	CTNS	17	3563239	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10		3563239	77631971	60	34073											
CA10	56934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	50149723	50149723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	50149723	C	T	50149723	3	4	580	1	0	0	0	0	1	0	0	0	2513	739	26	2	926	2	CA10	17	50149723	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10	46586484	50149723	31045487	61	34074											
ZNF24	7572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	32919802	32919802	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	32919802	T	A	32919802	3	1	580	1	0	0	0	0	1	0	0	0	17804	1608	56	5	555	5	ZNF24	18	32919802	Missense_Mutation	SNP	T	TCGA-CZ-5462-01A-01D-1501-10		32919802	45157446	62	34075											
COL5A3	50509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10116391	10116391	+	Splice_Site	SNP	C	C	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	10116391	C	T	10116391	5	4	580	1	0	0	0	0	0	0	1	0	3700	695	24	2	5056	2	COL5A3	19	10116391	Splice_Site	SNP	C	TCGA-CZ-5462-01A-01D-1501-10		10116391	49012592	63	34076											
LTBP4	8425	hgsc.bcm.edu;ucsc.edu	37	19	41129556	41129556	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	-	41129556	G	-	41129556	7	5	580	1	0	1	0	1	0	0	0	0	9083	1145	40	0	4207	0	LTBP4	19	41129556	Frame_Shift_Del	DEL	G	TCGA-CZ-5462-01A-01D-1501-10	31013165	41129556	17999427	64	34077											
C20orf114	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	31873889	31873889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	31873889	C	A	31873889	3	1	580	1	0	0	0	0	1	0	0	0	2084	623	22	4	12	4	C20orf114	20	31873889	Missense_Mutation	SNP	C	TCGA-CZ-5462-01A-01D-1501-10		31873889	31151631	65	34078											
PTPRT	11122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	40713330	40713330	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	T	40713330	G	T	40713330	2	4	580	1	0	0	0	0	0	0	0	1	12825	1161	41	4		4	PTPRT	20	40713330	Silent	SNP	G	TCGA-CZ-5462-01A-01D-1501-10	8839441	40713330	22312190	66	34079											
TRAPPC10	7109	broad.mit.edu;ucsc.edu	37	21	45513966	45513966	+	Missense_Mutation	SNP	T	C	C	rs142768361		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	C	45513966	C	C	45513966	3	2	580	1	0	0	0	0	1	0	0	0	16469	1696	59	3	3098	3	TRAPPC10	21	45513966	Missense_Mutation	SNP	T	TCGA-CZ-5462-01A-01D-1501-10		45513966	2615929	67	34080											
PITPNB	23760	hgsc.bcm.edu;ucsc.edu	37	22	28256199	28256199	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	-	28256199	G	-	28256199	7	5	580	1	0	1	0	1	0	0	0	0	11955	1357	47	0	262	0	PITPNB	22	28256199	Frame_Shift_Del	DEL	G	TCGA-CZ-5462-01A-01D-1501-10		28256199	23048367	68	34081											
ACOT9	23597	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	23754070	23754070	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	A	23754070	G	A	23754070	2	1	580	1	0	0	0	0	0	0	0	1	157	1252	44	2		2	ACOT9	23	23754070	Silent	SNP	G	TCGA-CZ-5462-01A-01D-1501-10		23754070	131516490	69	34082											
KLF8	11279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	56292017	56292017	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5462-01A-01D-1501-10	TCGA-CZ-5462-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74eed0c6-b3cc-4666-8ef0-194e1bbe1048	58ebedb1-02e5-437b-b5ec-c463a50b1f10	C	56292017	T	C	56292017	2	2	580	1	0	0	0	0	0	0	0	1	8359	1509	53	3		3	KLF8	23	56292017	Silent	SNP	T	TCGA-CZ-5462-01A-01D-1501-10	32537947	56292017	98978543	70	34083											
CLCN6	1185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11896171	11896171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	11896171	G	A	11896171	3	1	581	1	0	0	0	0	1	0	0	0	3469	1290	45	2	2021	2	CLCN6	1	11896171	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10		11896171	237354450	1	34084											
C1orf168	199920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	57189298	57189298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	57189298	A	C	57189298	3	2	581	1	0	0	0	0	1	0	0	0	2014	217	8	5	265	5	C1orf168	1	57189298	Missense_Mutation	SNP	A	TCGA-CZ-5463-01A-01D-1501-10	45293127	57189298	192061323	2	34085											
SGIP1	84251	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67161174	67161174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	G	67161174	A	G	67161174	3	3	581	1	0	0	0	0	1	0	0	0	14219	246	9	3	1698	3	SGIP1	1	67161174	Missense_Mutation	SNP	A	TCGA-CZ-5463-01A-01D-1501-10	9971876	67161174	182089447	3	34086											
ELTD1	64123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	79387344	79387344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	79387344	T	C	79387344	3	2	581	1	0	0	0	0	1	0	0	0	5086	1493	52	3	889	3	ELTD1	1	79387344	Missense_Mutation	SNP	T	TCGA-CZ-5463-01A-01D-1501-10	12226170	79387344	169863277	4	34087											
VANGL1	81839	broad.mit.edu;hgsc.bcm.edu	37	1	116226627	116226627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	116226627	G	T	116226627	3	4	581	1	0	0	0	0	1	0	0	0	17131	1174	41	4	1027	4	VANGL1	1	116226627	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	36839283	116226627	133023994	5	34088											
TPR	7175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186286645	186286645	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	186286645	G	T	186286645	2	4	581	1	0	0	0	0	0	0	0	1	16428	1335	47	4		4	TPR	1	186286645	Silent	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	70060018	186286645	62963976	6	34089											
CR1	1378	broad.mit.edu;hgsc.bcm.edu	37	1	207790124	207790124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	207790124	G	T	207790124	3	4	581	1	0	0	0	0	1	0	0	0	3842	1087	38	4	7028	4	CR1	1	207790124	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	21503479	207790124	41460497	7	34090											
SLC3A1	6519	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44547384	44547385	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	44547385	-	A	44547384	7	5	581	1	0	1	1	0	0	0	0	0	14639	1764	61	0	1702	0	SLC3A1	2	44547384	Frame_Shift_Ins	INS	-	TCGA-CZ-5463-01A-01D-1501-10		44547384	198651989	8	34091											
CCDC74A	90557	hgsc.bcm.edu	37	2	132288327	132288327	+	Silent	SNP	C	C	T	rs138376646	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	132288327	C	T	132288327	2	4	581	1	0	0	0	0	0	0	0	1	2849	639	23	1		1	CCDC74A	2	132288327	Silent	SNP	C	TCGA-CZ-5463-01A-01D-1501-10	87740943	132288327	110911046	9	34092											
DNAJC10	54431	broad.mit.edu	37	2	183605974	183605974	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	183605974	A	A	183605974	3	1	581	1	0	0	0	0	1	0	0	0	4631	1145	40	1	1124	1	DNAJC10	2	183605974	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	51317647	183605974	59593399	10	34093											
ATG3	64422	broad.mit.edu;ucsc.edu	37	3	112256693	112256693	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	G	112256693	G	G	112256693	3	3	581	1	0	0	0	0	1	0	0	0	1095	1838	64	5	405	5	ATG3	3	112256693	Missense_Mutation	SNP	T	TCGA-CZ-5463-01A-01D-1501-10		112256693	85765737	11	34094											
RABL3	285282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	120461341	120461341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	120461341	T	C	120461341	3	2	581	1	0	0	0	0	1	0	0	0	12985	1435	50	3	728	3	RABL3	3	120461341	Missense_Mutation	SNP	T	TCGA-CZ-5463-01A-01D-1501-10	8204648	120461341	77561089	12	34095											
RFC4	5984	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	186508151	186508151	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	186508151	C	T	186508151	2	4	581	1	0	0	0	0	0	0	0	1	13260	912	32	2		2	RFC4	3	186508151	Silent	SNP	C	TCGA-CZ-5463-01A-01D-1501-10	66046810	186508151	11514279	13	34096											
GAR1	54433	broad.mit.edu;ucsc.edu	37	4	110737330	110737330	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	110737330	T	T	110737330	4	4	581	1	0	0	0	0	0	1	0	0	6247	876	31	1	12	1	GAR1	4	110737330	Nonsense_Mutation	SNP	C	TCGA-CZ-5463-01A-01D-1501-10		110737330	80416946	14	34097											
MAML3	55534	broad.mit.edu;ucsc.edu	37	4	140640694	140640694	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	140640694	C	C	140640694	3	2	581	1	0	0	0	0	1	0	0	0	9214	1580	55	3	220	3	MAML3	4	140640694	Missense_Mutation	SNP	T	TCGA-CZ-5463-01A-01D-1501-10	29903364	140640694	50513582	15	34098											
GUCY1A3	2982	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	156634339	156634339	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	-	156634339	T	-	156634339	7	5	581	1	0	1	0	1	0	0	0	0	6901	1490	52	0	1209	0	GUCY1A3	4	156634339	Frame_Shift_Del	DEL	T	TCGA-CZ-5463-01A-01D-1501-10	15993645	156634339	34519937	16	34099											
C5orf54	63920	hgsc.bcm.edu;ucsc.edu	37	5	159821900	159821903	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	TCTC	TCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	-	159821903	TCTC	-	159821900	7	5	581	1	0	1	0	1	0	0	0	0	2312	1435	50	0	1190	0	C5orf54	5	159821900	Frame_Shift_Del	DEL	TCTC	TCGA-CZ-5463-01A-01D-1501-10		159821900	21093360	17	34100											
RPL26L1	51121	broad.mit.edu;hgsc.bcm.edu	37	5	172386880	172386880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	172386880	A	C	172386880	3	2	581	1	0	0	0	0	1	0	0	0	13587	247	9	5	6	5	RPL26L1	5	172386880	Missense_Mutation	SNP	A	TCGA-CZ-5463-01A-01D-1501-10	12564980	172386880	8528380	18	34101											
SLC34A1	6569	hgsc.bcm.edu;ucsc.edu	37	5	176815364	176815365	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	176815365	-	T	176815364	7	5	581	1	0	1	1	0	0	0	0	0	14580	564	20	0	953	0	SLC34A1	5	176815364	Frame_Shift_Ins	INS	-	TCGA-CZ-5463-01A-01D-1501-10	4428484	176815364	4099896	19	34102											
OR2J2	26707	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	29141585	29141585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	29141585	C	A	29141585	3	1	581	1	0	0	0	0	1	0	0	0	11010	478	17	4	175	4	OR2J2	6	29141585	Missense_Mutation	SNP	C	TCGA-CZ-5463-01A-01D-1501-10		29141585	141973482	20	34103											
KCNK5	8645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	39162007	39162007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	G	39162007	A	G	39162007	3	3	581	1	0	0	0	0	1	0	0	0	8076	333	12	3	935	3	KCNK5	6	39162007	Missense_Mutation	SNP	A	TCGA-CZ-5463-01A-01D-1501-10	10020422	39162007	131953060	21	34104											
KLHL32	114792	broad.mit.edu;ucsc.edu	37	6	97423877	97423877	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	97423877	A	A	97423877	3	1	581	1	0	0	0	0	1	0	0	0	8393	827	29	4	34	4	KLHL32	6	97423877	Missense_Mutation	SNP	C	TCGA-CZ-5463-01A-01D-1501-10	58261870	97423877	73691190	22	34105											
BCLAF1	9774	broad.mit.edu;hgsc.bcm.edu	37	6	136599666	136599666	+	Missense_Mutation	SNP	C	C	A	rs147857152	alternate_allele	TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	136599666	C	A	136599666	3	1	581	1	0	0	0	0	1	0	0	0	1383	913	32	4	2449	4	BCLAF1	6	136599666	Missense_Mutation	SNP	C	TCGA-CZ-5463-01A-01D-1501-10	39175789	136599666	34515401	23	34106											
CCDC129	223075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	31617614	31617614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	31617614	G	A	31617614	3	1	581	1	0	0	0	0	1	0	0	0	2766	1087	38	1	762	1	CCDC129	7	31617614	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10		31617614	127521049	24	34107											
AP4M1	9179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99700547	99700547	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	99700547	T	C	99700547	2	2	581	1	0	0	0	0	0	0	0	1	753	1461	51	3		3	AP4M1	7	99700547	Silent	SNP	T	TCGA-CZ-5463-01A-01D-1501-10	68082933	99700547	59438116	25	34108											
PPP1R3A	5506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	113518058	113518058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	113518058	C	A	113518058	3	1	581	1	0	0	0	0	1	0	0	0	12381	855	30	4	283	4	PPP1R3A	7	113518058	Missense_Mutation	SNP	C	TCGA-CZ-5463-01A-01D-1501-10	13817511	113518058	45620605	26	34109											
KCND2	3751	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	119915447	119915447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	119915447	G	A	119915447	3	1	581	1	0	0	0	0	1	0	0	0	8026	1145	40	1	763	1	KCND2	7	119915447	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	6397389	119915447	39223216	27	34110											
GALNT11	63917	broad.mit.edu;hgsc.bcm.edu	37	7	151791383	151791383	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	151791383	T	A	151791383	3	1	581	1	0	0	0	0	1	0	0	0	6216	1609	56	5	73	5	GALNT11	7	151791383	Missense_Mutation	SNP	T	TCGA-CZ-5463-01A-01D-1501-10	31875936	151791383	7347280	28	34111											
NXNL2	158046	broad.mit.edu;hgsc.bcm.edu	37	9	91159434	91159434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	91159434	C	A	91159434	3	1	581	1	0	0	0	0	1	0	0	0	10796	739	26	4	449	4	NXNL2	9	91159434	Missense_Mutation	SNP	C	TCGA-CZ-5463-01A-01D-1501-10		91159434	50053997	29	34112											
MED27	9442	broad.mit.edu	37	9	134955076	134955076	+	Silent	SNP	A	G	G	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	G	134955076	G	G	134955076	2	3	581	1	0	0	0	0	0	0	0	1	9452	359	13	3		3	MED27	9	134955076	Silent	SNP	A	TCGA-CZ-5463-01A-01D-1501-10	43795642	134955076	6258355	30	34113											
TPRN	286262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	140093554	140093554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	140093554	A	T	140093554	3	4	581	1	0	0	0	0	1	0	0	0	16433	304	11	5	621	5	TPRN	9	140093554	Missense_Mutation	SNP	A	TCGA-CZ-5463-01A-01D-1501-10	5138478	140093554	1119877	31	34114											
MARCH5	54708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	94110949	94110949	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	94110949	A	T	94110949	3	4	581	1	0	0	0	0	1	0	0	0	9311	40	2	5	844	5	MARCH5	10	94110949	Missense_Mutation	SNP	A	TCGA-CZ-5463-01A-01D-1501-10		94110949	41423798	32	34115											
MUC6	4588	broad.mit.edu;ucsc.edu	37	11	1023622	1023622	+	Missense_Mutation	SNP	G	A	A	rs138887092	by1000genomes	TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	1023622	A	A	1023622	3	1	581	1	0	0	0	0	1	0	0	0	9987	1145	40	1	3938	1	MUC6	11	1023622	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10		1023622	133982894	33	34116											
OR4S2	219431	broad.mit.edu;ucsc.edu	37	11	55418663	55418663	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	55418663	T	T	55418663	3	4	581	1	0	0	0	0	1	0	0	0	11090	1319	46	4	286	4	OR4S2	11	55418663	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	54395041	55418663	79587853	34	34117											
MMP8	4317	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	102595498	102595498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	102595498	G	T	102595498	3	4	581	1	0	0	0	0	1	0	0	0	9675	1377	48	4	1354	4	MMP8	11	102595498	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	47176835	102595498	32411018	35	34118											
MMP12	4321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	102736586	102736586	+	Silent	SNP	A	A	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	102736586	A	C	102736586	2	2	581	1	0	0	0	0	0	0	0	1	9658	72	3	5		5	MMP12	11	102736586	Silent	SNP	A	TCGA-CZ-5463-01A-01D-1501-10	141088	102736586	32269930	36	34119											
B4GALNT3	283358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	667220	667220	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	667220	C	A	667220	4	1	581	1	0	0	0	0	0	1	0	0	1268	838	29	4	2639	4	B4GALNT3	12	667220	Nonsense_Mutation	SNP	C	TCGA-CZ-5463-01A-01D-1501-10		667220	133184675	37	34120											
LPCAT3	10162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7090783	7090783	+	Silent	SNP	A	A	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	7090783	A	C	7090783	2	2	581	1	0	0	0	0	0	0	0	1	8919	117	5	5		5	LPCAT3	12	7090783	Silent	SNP	A	TCGA-CZ-5463-01A-01D-1501-10	6423563	7090783	126761112	38	34121											
CD163L1	283316	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7526111	7526111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	7526111	T	A	7526111	3	1	581	1	0	0	0	0	1	0	0	0	2970	1464	51	5	850	5	CD163L1	12	7526111	Missense_Mutation	SNP	T	TCGA-CZ-5463-01A-01D-1501-10	435328	7526111	126325784	39	34122											
ZMYM2	7750	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	20660011	20660011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	20660011	T	C	20660011	3	2	581	1	0	0	0	0	1	0	0	0	17712	1464	51	3	4081	3	ZMYM2	13	20660011	Missense_Mutation	SNP	T	TCGA-CZ-5463-01A-01D-1501-10		20660011	94509867	40	34123											
ZC3H13	23091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	46543242	46543242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	46543242	G	C	46543242	3	2	581	1	0	0	0	0	1	0	0	0	17577	1261	44	4	1273	4	ZC3H13	13	46543242	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	25883231	46543242	68626636	41	34124											
CLDN10	9071	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	96230215	96230215	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	96230215	G	C	96230215	3	2	581	1	0	0	0	0	1	0	0	0	3474	942	33	4	870	4	CLDN10	13	96230215	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	49686973	96230215	18939663	42	34125											
MAX	4149	hgsc.bcm.edu;ucsc.edu	37	14	65560495	65560495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	-	65560495	T	-	65560495	7	5	581	1	0	1	0	1	0	0	0	0	9346	1722	60	0	732	0	MAX	14	65560495	Frame_Shift_Del	DEL	T	TCGA-CZ-5463-01A-01D-1501-10		65560495	41789045	43	34126											
VPS13C	54832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	62214721	62214721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	C	62214721	G	C	62214721	3	2	581	1	0	0	0	0	1	0	0	0	17203	1299	45	4	4567	4	VPS13C	15	62214721	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10		62214721	40316671	44	34127											
ZNF609	23060	hgsc.bcm.edu;ucsc.edu	37	15	64967099	64967099	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	64967099	C	A	64967099	2	1	581	1	0	0	0	0	0	0	0	1	18047	784	28	4		4	ZNF609	15	64967099	Silent	SNP	C	TCGA-CZ-5463-01A-01D-1501-10	2752378	64967099	37564293	45	34128											
SLCO3A1	28232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	92669422	92669422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	92669422	G	A	92669422	3	1	581	1	0	0	0	0	1	0	0	0	14741	1145	40	1	1328	1	SLCO3A1	15	92669422	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	27702323	92669422	9861970	46	34129											
C16orf3	750	hgsc.bcm.edu;ucsc.edu	37	16	90095480	90095480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	90095480	T	A	90095480	3	1	581	1	0	0	0	0	1	0	0	0	1814	1580	55	5	86	5	C16orf3	16	90095480	Missense_Mutation	SNP	T	TCGA-CZ-5463-01A-01D-1501-10		90095480	259273	47	34130											
ZMYND15	84225	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4647403	4647403	+	Splice_Site	SNP	G	G	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	4647403	G	T	4647403	5	4	581	1	0	0	0	0	0	0	1	0	17720	1391	48	4	1522	4	ZMYND15	17	4647403	Splice_Site	SNP	G	TCGA-CZ-5463-01A-01D-1501-10		4647403	76547807	48	34131											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7577124	7577124	+	Missense_Mutation	SNP	C	C	T	rs121912657	alternate_allele	TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	7577124	C	T	7577124	3	4	581	1	0	0	0	0	1	0	0	0	16393	507	18	2	472	2	TP53	17	7577124	Missense_Mutation	SNP	C	TCGA-CZ-5463-01A-01D-1501-10	2929721	7577124	73618086	49	34132											
TMEM98	26022	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	31260288	31260288	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	31260288	C	A	31260288	2	1	581	1	0	0	0	0	0	0	0	1	16237	581	21	4		4	TMEM98	17	31260288	Silent	SNP	C	TCGA-CZ-5463-01A-01D-1501-10	23683164	31260288	49934922	50	34133											
ZNF677	342926	broad.mit.edu;hgsc.bcm.edu	37	19	53740523	53740523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	T	53740523	G	T	53740523	3	4	581	1	0	0	0	0	1	0	0	0	18096	1000	35	4	301	4	ZNF677	19	53740523	Missense_Mutation	SNP	G	TCGA-CZ-5463-01A-01D-1501-10		53740523	5388460	51	34134											
NLRP7	199713	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55450708	55450708	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5463-01A-01D-1501-10	TCGA-CZ-5463-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3732539b-eb77-485b-81a1-83be956a9a87	d9a813ec-eb29-45c1-9324-55d38bf59c12	A	55450708	G	A	55450708	2	1	581	1	0	0	0	0	0	0	0	1	10489	1136	40	1		1	NLRP7	19	55450708	Silent	SNP	G	TCGA-CZ-5463-01A-01D-1501-10	1710185	55450708	3678275	52	34135											
CATSPER4	378807	broad.mit.edu;ucsc.edu	37	1	26524568	26524568	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	26524568	A	A	26524568	2	1	582	1	0	0	0	0	0	0	0	1	2692	1362	47	2		2	CATSPER4	1	26524568	Silent	SNP	G	TCGA-CZ-5465-01A-01D-1806-10		26524568	222726053	1	34136											
PUM1	9698	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	31447563	31447563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	31447563	C	T	31447563	3	4	582	1	0	0	0	0	1	0	0	0	12838	710	25	2	2177	2	PUM1	1	31447563	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	4922995	31447563	217803058	2	34137											
COL9A2	1298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40777201	40777201	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	40777201	G	-	40777201	7	5	582	1	0	1	0	1	0	0	0	0	3710	1357	47	0	1671	0	COL9A2	1	40777201	Frame_Shift_Del	DEL	G	TCGA-CZ-5465-01A-01D-1806-10	9329638	40777201	208473420	3	34138											
USP24	23358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55642115	55642115	+	Silent	SNP	A	A	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	55642115	A	T	55642115	2	4	582	1	0	0	0	0	0	0	0	1	17067	289	10	5		5	USP24	1	55642115	Silent	SNP	A	TCGA-CZ-5465-01A-01D-1806-10	14864914	55642115	193608506	4	34139											
CD101	9398	broad.mit.edu;ucsc.edu	37	1	117561137	117561137	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	117561137	T	T	117561137	3	4	582	1	0	0	0	0	1	0	0	0	2964	1203	42	4	1994	4	CD101	1	117561137	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	61919022	117561137	131689484	5	34140											
FCGR3B	2215	broad.mit.edu;hgsc.bcm.edu	37	1	161599725	161599725	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	161599725	C	T	161599725	2	4	582	1	0	0	0	0	0	0	0	1	5792	680	24	2		2	FCGR3B	1	161599725	Silent	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	44038588	161599725	87650896	6	34141											
CENPL	91687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	173780412	173780412	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	173780412	G	C	173780412	4	2	582	1	0	0	0	0	0	1	0	0	3238	1294	45	4	1166	4	CENPL	1	173780412	Nonsense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	12180687	173780412	75470209	7	34142											
CFHR3	10878	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	196749100	196749100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	196749100	G	T	196749100	3	4	582	1	0	0	0	0	1	0	0	0	3288	1377	48	4	437	4	CFHR3	1	196749100	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	22968688	196749100	52501521	8	34143											
SRGAP2	23380	broad.mit.edu;hgsc.bcm.edu	37	1	206516309	206516309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	206516309	A	G	206516309	3	3	582	1	0	0	0	0	1	0	0	0	15158	449	16	3	112	3	SRGAP2	1	206516309	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10	9767209	206516309	42734312	9	34144											
USH2A	7399	broad.mit.edu;ucsc.edu	37	1	215848923	215848923	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	215848923	T	T	215848923	4	4	582	1	0	0	0	0	0	1	0	0	17048	1024	36	4	3318	4	USH2A	1	215848923	Nonsense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	9332614	215848923	33401698	10	34145											
SPATA17	128153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	217947704	217947704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	217947704	G	T	217947704	3	4	582	1	0	0	0	0	1	0	0	0	15014	942	33	4	574	4	SPATA17	1	217947704	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	2098781	217947704	31302917	11	34146											
TRIM11	81559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	228582654	228582654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	228582654	A	T	228582654	3	4	582	1	0	0	0	0	1	0	0	0	16499	362	13	5	251	5	TRIM11	1	228582654	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10	10634950	228582654	20667967	12	34147											
C1orf101	257044	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	244715945	244715945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	244715945	T	A	244715945	3	1	582	1	0	0	0	0	1	0	0	0	1978	1693	59	5	892	5	C1orf101	1	244715945	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	16133291	244715945	4534676	13	34148											
OR2L8	391190	broad.mit.edu;hgsc.bcm.edu	37	1	248112361	248112361	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	248112361	A	-	248112361	7	5	582	1	0	1	0	1	0	0	0	0	11016	217	8	0	204	0	OR2L8	1	248112361	Frame_Shift_Del	DEL	A	TCGA-CZ-5465-01A-01D-1806-10	3396416	248112361	1138260	14	34149											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32605236	32605236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	32605236	T	C	32605236	3	2	582	1	0	0	0	0	1	0	0	0	1438	1435	50	3	533	3	BIRC6	2	32605236	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10		32605236	210594137	15	34150											
EIF2AK2	5610	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	37347219	37347219	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	37347219	C	G	37347219	3	3	582	1	0	0	0	0	1	0	0	0	4999	856	30	4	544	4	EIF2AK2	2	37347219	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	4741983	37347219	205852154	16	34151											
LRPPRC	10128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44209499	44209499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	44209499	G	T	44209499	3	4	582	1	0	0	0	0	1	0	0	0	8972	942	33	4	4108	4	LRPPRC	2	44209499	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	6862280	44209499	198989874	17	34152											
BCL11A	53335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	60780394	60780394	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	60780394	G	A	60780394	2	1	582	1	0	0	0	0	0	0	0	1	1363	1306	46	2		2	BCL11A	2	60780394	Silent	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	16570895	60780394	182418979	18	34153											
ANAPC1	64682	broad.mit.edu;hgsc.bcm.edu	37	2	112539971	112539971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	112539971	C	G	112539971	3	3	582	1	0	0	0	0	1	0	0	0	598	681	24	4	681	4	ANAPC1	2	112539971	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	51759577	112539971	130659402	19	34154											
CLASP1	23332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	122206531	122206531	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	122206531	T	C	122206531	2	2	582	1	0	0	0	0	0	0	0	1	3456	1741	61	3		3	CLASP1	2	122206531	Silent	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	9666560	122206531	120992842	20	34155											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179569401	179569401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	179569401	G	A	179569401	3	1	582	1	0	0	0	0	1	0	0	0	16747	1059	37	1	74763	1	TTN	2	179569401	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	57362870	179569401	63629972	21	34156											
ERBB4	2066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	212587123	212587123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	212587123	C	A	212587123	3	1	582	1	0	0	0	0	1	0	0	0	5211	478	17	4	3136	4	ERBB4	2	212587123	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	33017722	212587123	30612250	22	34157											
ABCA12	26154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	215876834	215876834	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	215876834	T	-	215876834	7	5	582	1	0	1	0	1	0	0	0	0	30	1609	56	0	5957	0	ABCA12	2	215876834	Frame_Shift_Del	DEL	T	TCGA-CZ-5465-01A-01D-1806-10	3289711	215876834	27322539	23	34158											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191480	10191480	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	10191480	T	-	10191480	7	5	582	1	0	1	0	1	0	0	0	0	17174	1580	55	0	483	0	VHL	3	10191480	Frame_Shift_Del	DEL	T	TCGA-CZ-5465-01A-01D-1806-10		10191480	187830950	24	34159											
SEMA3B	7869	hgsc.bcm.edu	37	3	50310781	50310781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	50310781	C	T	50310781	3	4	582	1	0	0	0	0	1	0	0	0	14038	535	19	1	742	1	SEMA3B	3	50310781	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	40119301	50310781	147711649	25	34160											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52696199	52696199	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	52696199	C	-	52696199	7	5	582	1	0	1	0	1	0	0	0	0	11498	893	31	0	4530	0	PBRM1	3	52696199	Frame_Shift_Del	DEL	C	TCGA-CZ-5465-01A-01D-1806-10	2385418	52696199	145326231	26	34161											
PROS1	5627	broad.mit.edu	37	3	93643084	93643084	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	93643084	T	T	93643084	3	4	582	1	0	0	0	0	1	0	0	0	12568	695	24	2	1823	2	PROS1	3	93643084	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	40946885	93643084	104379346	27	34162											
DRD3	1814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113858457	113858457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	113858457	C	G	113858457	3	3	582	1	0	0	0	0	1	0	0	0	4760	478	17	4	601	4	DRD3	3	113858457	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	20215373	113858457	84163973	28	34163											
GAP43	2596	broad.mit.edu;hgsc.bcm.edu	37	3	115395305	115395305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	115395305	C	T	115395305	3	4	582	1	0	0	0	0	1	0	0	0	6242	739	26	2	624	2	GAP43	3	115395305	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	1536848	115395305	82627125	29	34164											
C3orf1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	119217644	119217644	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	119217644	G	C	119217644	3	2	582	1	0	0	0	0	1	0	0	0	2208	1029	36	4	66	4	C3orf1	3	119217644	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	3822339	119217644	78804786	30	34165											
PARP14	54625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	122437546	122437546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	122437546	G	T	122437546	3	4	582	1	0	0	0	0	1	0	0	0	11465	933	33	4	4602	4	PARP14	3	122437546	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	3219902	122437546	75584884	31	34166											
IGSF10	285313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	151161389	151161389	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	151161389	T	A	151161389	2	1	582	1	0	0	0	0	0	0	0	1	7604	1799	63	5		5	IGSF10	3	151161389	Silent	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	28723843	151161389	46861041	32	34167											
OCIAD2	132299	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	48887578	48887578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	48887578	A	G	48887578	3	3	582	1	0	0	0	0	1	0	0	0	10825	188	7	3	80	3	OCIAD2	4	48887578	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10		48887578	142266698	33	34168											
LPHN3	23284	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	62813877	62813877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	62813877	G	A	62813877	3	1	582	1	0	0	0	0	1	0	0	0	8924	1290	45	2	2538	2	LPHN3	4	62813877	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	13926299	62813877	128340399	34	34169											
PCDH10	57575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	134073481	134073481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	134073481	T	G	134073481	3	3	582	1	0	0	0	0	1	0	0	0	11514	1783	62	5	2188	5	PCDH10	4	134073481	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	71259604	134073481	57080795	35	34170											
SC4MOL	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	166254730	166254730	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	166254730	T	-	166254730	7	5	582	1	0	1	0	1	0	0	0	0	13878	1493	52	0	210	0	SC4MOL	4	166254730	Frame_Shift_Del	DEL	T	TCGA-CZ-5465-01A-01D-1806-10	32181249	166254730	24899546	36	34171											
PDZD2	23037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32090803	32090803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	32090803	T	G	32090803	3	3	582	1	0	0	0	0	1	0	0	0	11708	1667	58	5	7323	5	PDZD2	5	32090803	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10		32090803	148824457	37	34172											
TBC1D22B	55633	hgsc.bcm.edu	37	6	37250060	37250060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	37250060	G	A	37250060	3	1	582	1	0	0	0	0	1	0	0	0	15624	1232	43	2	535	2	TBC1D22B	6	37250060	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10		37250060	133865007	38	34173											
ENPP3	5169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	131971248	131971248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	131971248	G	C	131971248	3	2	582	1	0	0	0	0	1	0	0	0	5133	1261	44	4	246	4	ENPP3	6	131971248	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	94721188	131971248	39143819	39	34174											
RMND1	55005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	151726969	151726969	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	151726969	G	T	151726969	2	4	582	1	0	0	0	0	0	0	0	1	13409	1277	45	4		4	RMND1	6	151726969	Silent	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	19755721	151726969	19388098	40	34175											
TBP	6908	hgsc.bcm.edu	37	6	170871043	170871043	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	170871043	G	A	170871043	2	1	582	1	0	0	0	0	0	0	0	1	15656	962	34	2		2	TBP	6	170871043	Silent	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	19144074	170871043	244024	41	34176											
TBP	6908	hgsc.bcm.edu	37	6	170871097	170871097	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	170871097	G	A	170871097	2	1	582	1	0	0	0	0	0	0	0	1	15656	962	34	2		2	TBP	6	170871097	Silent	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	54	170871097	243970	42	34177											
SCRN1	9805	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	29980329	29980330	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	29980330	-	C	29980329	7	5	582	1	0	1	1	0	0	0	0	0	13951	146	6	0	552	0	SCRN1	7	29980329	Frame_Shift_Ins	INS	-	TCGA-CZ-5465-01A-01D-1806-10		29980329	129158334	43	34178											
POU6F2	11281	broad.mit.edu	37	7	39500265	39500265	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	39500265	T	T	39500265	3	4	582	1	0	0	0	0	1	0	0	0	12292	1203	42	4	1556	4	POU6F2	7	39500265	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	9519936	39500265	119638398	44	34179											
AEBP1	165	hgsc.bcm.edu;ucsc.edu	37	7	44153688	44153688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	44153688	G	A	44153688	3	1	582	1	0	0	0	0	1	0	0	0	349	1232	43	2	3387	2	AEBP1	7	44153688	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	4653423	44153688	114984975	45	34180	444	4									
AEBP1	165	hgsc.bcm.edu	37	7	44153693	44153693	+	Missense_Mutation	SNP	A	A	G	rs140163558		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	44153693	A	G	44153693	3	3	582	1	0	0	0	0	1	0	0	0	349	131	5	3	3392	3	AEBP1	7	44153693	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10	5	44153693	114984970	46	34181	444	4									
AEBP1	165	hgsc.bcm.edu;ucsc.edu	37	7	44153696	44153696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	44153696	G	T	44153696	3	4	582	1	0	0	0	0	1	0	0	0	349	1261	44	4	3395	4	AEBP1	7	44153696	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	3	44153696	114984967	47	34182	444	4									
AEBP1	165	hgsc.bcm.edu	37	7	44153704	44153704	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	44153704	C	T	44153704	2	4	582	1	0	0	0	0	0	0	0	1	349	639	23	1		1	AEBP1	7	44153704	Silent	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	8	44153704	114984959	48	34183	444	4									
MET	4233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	116411638	116411638	+	Silent	SNP	C	C	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	116411638	C	G	116411638	2	3	582	1	0	0	0	0	0	0	0	1	9492	900	32	4		4	MET	7	116411638	Silent	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	72257934	116411638	42727025	49	34184											
IQUB	154865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	123119948	123119948	+	Silent	SNP	A	A	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	123119948	A	C	123119948	2	2	582	1	0	0	0	0	0	0	0	1	7827	233	9	5		5	IQUB	7	123119948	Silent	SNP	A	TCGA-CZ-5465-01A-01D-1806-10	6708310	123119948	36018715	50	34185											
ZC3HAV1	56829	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	138764225	138764225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	138764225	G	A	138764225	3	1	582	1	0	0	0	0	1	0	0	0	17587	1029	36	2	1290	2	ZC3HAV1	7	138764225	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	15644277	138764225	20374438	51	34186											
PDLIM2	64236	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	22452072	22452072	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	22452072	A	T	22452072	3	4	582	1	0	0	0	0	1	0	0	0	11687	330	12	5	1127	5	PDLIM2	8	22452072	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10		22452072	123911950	52	34187											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110460595	110460595	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	110460595	T	C	110460595	2	2	582	1	0	0	0	0	0	0	0	1	11979	1403	49	3		3	PKHD1L1	8	110460595	Silent	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	88008523	110460595	35903427	53	34188											
FER1L6	654463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	125052244	125052244	+	Silent	SNP	A	A	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	125052244	A	T	125052244	2	4	582	1	0	0	0	0	0	0	0	1	5822	117	5	5		5	FER1L6	8	125052244	Silent	SNP	A	TCGA-CZ-5465-01A-01D-1806-10	14591649	125052244	21311778	54	34189											
FLJ43860	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	142444934	142444934	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	142444934	T	C	142444934	2	2	582	1	0	0	0	0	0	0	0	1	5937	1683	59	3		3	FLJ43860	8	142444934	Silent	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	17392690	142444934	3919088	55	34190											
RANBP6	26953	broad.mit.edu;hgsc.bcm.edu	37	9	6013478	6013478	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	6013478	T	G	6013478	3	3	582	1	0	0	0	0	1	0	0	0	13044	1606	56	5	1191	5	RANBP6	9	6013478	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10		6013478	135199953	56	34191											
ALDOB	229	hgsc.bcm.edu;ucsc.edu	37	9	104192206	104192207	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	TT	104192207	-	TT	104192206	7	5	582	1	0	1	1	0	0	0	0	0	508	1029	36	0	967	0	ALDOB	9	104192206	Frame_Shift_Ins	INS	-	TCGA-CZ-5465-01A-01D-1806-10	98178728	104192206	37021225	57	34192											
C5	727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	123719562	123719562	+	Splice_Site	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	123719562	C	T	123719562	5	4	582	1	0	0	0	0	0	0	1	0	2282	521	18	2	279	2	C5	9	123719562	Splice_Site	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	19527356	123719562	17493869	58	34193											
URM1	81605	broad.mit.edu;hgsc.bcm.edu	37	9	131151698	131151698	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	131151698	C	G	131151698	3	3	582	1	0	0	0	0	1	0	0	0	17039	623	22	4	361	4	URM1	9	131151698	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	7432136	131151698	10061733	59	34194											
KIAA1984	84960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139697161	139697161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	139697161	G	A	139697161	3	1	582	1	0	0	0	0	1	0	0	0	8273	1145	40	1	611	1	KIAA1984	9	139697161	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	8545463	139697161	1516270	60	34195											
USP6NL	9712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	11543102	11543102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	11543102	T	C	11543102	3	2	582	1	0	0	0	0	1	0	0	0	17099	1522	53	3	2140	3	USP6NL	10	11543102	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10		11543102	123991645	61	34196											
BMS1	9790	broad.mit.edu;hgsc.bcm.edu	37	10	43318590	43318590	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	43318590	G	C	43318590	3	2	582	1	0	0	0	0	1	0	0	0	1472	1029	36	4	3231	4	BMS1	10	43318590	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	31775488	43318590	92216157	62	34197											
TMEM26	219623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	63212753	63212753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	63212753	C	A	63212753	3	1	582	1	0	0	0	0	1	0	0	0	16163	680	24	4	1043	4	TMEM26	10	63212753	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	19894163	63212753	72321994	63	34198											
CCNJ	54619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	97810064	97810064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	97810064	C	T	97810064	3	4	582	1	0	0	0	0	1	0	0	0	2930	527	19	1	127	1	CCNJ	10	97810064	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	34597311	97810064	37724683	64	34199											
MUC2	4583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	1092095	1092095	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	1092095	G	A	1092095	4	1	582	1	0	0	0	0	0	1	0	0	9982	1357	47	2	4032	2	MUC2	11	1092095	Nonsense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10		1092095	133914421	65	34200											
SLC5A12	159963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	26695022	26695022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	26695022	A	-	26695022	7	5	582	1	0	1	0	1	0	0	0	0	14677	372	13	0	230	0	SLC5A12	11	26695022	Frame_Shift_Del	DEL	A	TCGA-CZ-5465-01A-01D-1806-10	25602927	26695022	108311494	66	34201											
SLC15A3	51296	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60711236	60711236	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	60711236	G	A	60711236	2	1	582	1	0	0	0	0	0	0	0	1	14413	1048	37	1		1	SLC15A3	11	60711236	Silent	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	34016214	60711236	74295280	67	34202											
NRXN2	9379	broad.mit.edu;ucsc.edu	37	11	64453329	64453329	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	64453329	G	G	64453329	3	3	582	1	0	0	0	0	1	0	0	0	10673	333	12	3	4538	3	NRXN2	11	64453329	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10	3742093	64453329	70553187	68	34203											
EFEMP2	30008	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65635794	65635794	+	Missense_Mutation	SNP	C	C	T	rs113167523	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	65635794	C	T	65635794	3	4	582	1	0	0	0	0	1	0	0	0	4944	536	19	1	397	1	EFEMP2	11	65635794	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	1182465	65635794	69370722	69	34204											
PITPNM1	9600	broad.mit.edu;ucsc.edu	37	11	67265791	67265791	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	67265791	C	C	67265791	3	2	582	1	0	0	0	0	1	0	0	0	11957	188	7	5	2303	5	PITPNM1	11	67265791	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10	1629997	67265791	67740725	70	34205											
MLL	4297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118390456	118390456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	118390456	A	G	118390456	3	3	582	1	0	0	0	0	1	0	0	0	9627	101	4	3	11387	3	MLL	11	118390456	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10	51124665	118390456	16616060	71	34206											
CCND2	894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	4385304	4385304	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	4385304	C	G	4385304	3	3	582	1	0	0	0	0	1	0	0	0	2919	855	30	4	335	4	CCND2	12	4385304	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10		4385304	129466591	72	34207											
LRRK2	120892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	40689408	40689408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	40689408	C	A	40689408	3	1	582	1	0	0	0	0	1	0	0	0	9040	595	21	4	3148	4	LRRK2	12	40689408	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	36304104	40689408	93162487	73	34208											
PRICKLE1	144165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	42853975	42853975	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	42853975	T	G	42853975	3	3	582	1	0	0	0	0	1	0	0	0	12496	1841	64	5	367	5	PRICKLE1	12	42853975	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	2164567	42853975	90997920	74	34209											
LETMD1	25875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	51449970	51449970	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	51449970	T	G	51449970	3	3	582	1	0	0	0	0	1	0	0	0	8743	1580	55	5	726	5	LETMD1	12	51449970	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	8595995	51449970	82401925	75	34210											
SP1	6667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53776832	53776832	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	53776832	T	G	53776832	2	3	582	1	0	0	0	0	0	0	0	1	14972	1538	54	5		5	SP1	12	53776832	Silent	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	2326862	53776832	80075063	76	34211											
TMTC3	160418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	88560118	88560118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	88560118	C	T	88560118	3	4	582	1	0	0	0	0	1	0	0	0	16274	594	21	2	831	2	TMTC3	12	88560118	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	34783286	88560118	45291777	77	34212											
TMTC3	160418	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	88584363	88584363	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	88584363	G	-	88584363	7	5	582	1	0	1	0	1	0	0	0	0	16274	971	34	0	1712	0	TMTC3	12	88584363	Frame_Shift_Del	DEL	G	TCGA-CZ-5465-01A-01D-1806-10	24245	88584363	45267532	78	34213											
UHRF1BP1L	23074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	100452921	100452921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	100452921	T	G	100452921	3	3	582	1	0	0	0	0	1	0	0	0	16981	1850	64	5	2292	5	UHRF1BP1L	12	100452921	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	11868558	100452921	33398974	79	34214											
LRRC43	254050	hgsc.bcm.edu	37	12	122685176	122685176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	122685176	G	A	122685176	3	1	582	1	0	0	0	0	1	0	0	0	9008	1000	35	2	1623	2	LRRC43	12	122685176	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	22232255	122685176	11166719	80	34215											
NALCN	259232	broad.mit.edu;hgsc.bcm.edu	37	13	101717877	101717877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	101717877	G	A	101717877	3	1	582	1	0	0	0	0	1	0	0	0	10155	1086	38	1	753	1	NALCN	13	101717877	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10		101717877	13452001	81	34216											
IL25	64806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23842465	23842465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	23842465	C	A	23842465	3	1	582	1	0	0	0	0	1	0	0	0	7685	477	17	4	153	4	IL25	14	23842465	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10		23842465	83507075	82	34217											
C14orf39	317761	broad.mit.edu	37	14	60938407	60938407	+	Missense_Mutation	SNP	T	A	A	rs1956551	bycluster;alternate_allele	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	60938407	A	A	60938407	3	1	582	1	0	0	0	0	1	0	0	0	1774	1638	57	5	1441	5	C14orf39	14	60938407	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	37095942	60938407	46411133	83	34218											
RHOJ	57381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	63735887	63735887	+	Splice_Site	SNP	G	G	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	63735887	G	C	63735887	5	2	582	1	0	0	0	0	0	0	1	0	13354	1275	44	4	244	4	RHOJ	14	63735887	Splice_Site	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	2797480	63735887	43613653	84	34219											
MLH3	27030	hgsc.bcm.edu;ucsc.edu	37	14	75513395	75513396	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	AT	75513396	-	AT	75513395	7	5	582	1	0	1	1	0	0	0	0	0	9625	1280	45	0	1445	0	MLH3	14	75513395	Frame_Shift_Ins	INS	-	TCGA-CZ-5465-01A-01D-1806-10	11777508	75513395	31836145	85	34220											
CCPG1	9236	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	55669238	55669238	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	55669238	T	G	55669238	3	3	582	1	0	0	0	0	1	0	0	0	2940	1606	56	5	1926	5	CCPG1	15	55669238	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10		55669238	46862154	86	34221											
AP3B2	8120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	83349701	83349701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	83349701	T	-	83349701	7	5	582	1	0	1	0	1	0	0	0	0	745	1725	60	0	2593	0	AP3B2	15	83349701	Frame_Shift_Del	DEL	T	TCGA-CZ-5465-01A-01D-1806-10	27680463	83349701	19181691	87	34222											
RGMA	56963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	93616253	93616253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	93616253	G	C	93616253	3	2	582	1	0	0	0	0	1	0	0	0	13293	962	34	4	1342	4	RGMA	15	93616253	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	10266552	93616253	8915139	88	34223											
SEC14L5	9717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	5040871	5040871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	5040871	A	G	5040871	3	3	582	1	0	0	0	0	1	0	0	0	13998	72	3	3	463	3	SEC14L5	16	5040871	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10		5040871	85313882	89	34224											
C16orf62	57020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	19641134	19641134	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	19641134	C	G	19641134	3	3	582	1	0	0	0	0	1	0	0	0	1827	710	25	4	1616	4	C16orf62	16	19641134	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	14600263	19641134	70713619	90	34225											
ATXN2L	11273	broad.mit.edu;ucsc.edu	37	16	28847500	28847500	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	28847500	A	A	28847500	3	1	582	1	0	0	0	0	1	0	0	0	1212	1291	45	2	3228	2	ATXN2L	16	28847500	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	9206366	28847500	61507253	91	34226											
DNAH2	146754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7727491	7727491	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	7727491	G	C	7727491	3	2	582	1	0	0	0	0	1	0	0	0	4604	1261	44	4	11829	4	DNAH2	17	7727491	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10		7727491	73467719	92	34227											
MYO15A	51168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	18055188	18055188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	18055188	C	T	18055188	3	4	582	1	0	0	0	0	1	0	0	0	10070	759	27	1	7970	1	MYO15A	17	18055188	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	10327697	18055188	63140022	93	34228											
COASY	80347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	40715086	40715086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	40715086	C	T	40715086	3	4	582	1	0	0	0	0	1	0	0	0	3654	893	31	1	539	1	COASY	17	40715086	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	22659898	40715086	40480124	94	34229											
ADAM11	4185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	42854119	42854119	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	42854119	C	G	42854119	3	3	582	1	0	0	0	0	1	0	0	0	235	739	26	4	1647	4	ADAM11	17	42854119	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	2139033	42854119	38341091	95	34230											
BRIP1	83990	broad.mit.edu;hgsc.bcm.edu	37	17	59820468	59820468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	59820468	C	T	59820468	3	4	582	1	0	0	0	0	1	0	0	0	1516	536	19	1	1484	1	BRIP1	17	59820468	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	16966349	59820468	21374742	96	34231											
SCN4A	6329	broad.mit.edu;hgsc.bcm.edu	37	17	62029159	62029159	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	62029159	G	T	62029159	2	4	582	1	0	0	0	0	0	0	0	1	13933	1048	37	4		4	SCN4A	17	62029159	Silent	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	2208691	62029159	19166051	97	34232											
PTPRM	5797	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	7955120	7955120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	7955120	A	T	7955120	3	4	582	1	0	0	0	0	1	0	0	0	12819	57	2	5	866	5	PTPRM	18	7955120	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10		7955120	70122128	98	34233											
ABCA7	10347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1044699	1044699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	1044699	G	A	1044699	3	1	582	1	0	0	0	0	1	0	0	0	37	1087	38	1	1209	1	ABCA7	19	1044699	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10		1044699	58084284	99	34234											
ZNF507	22847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	32843992	32843992	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	32843992	T	A	32843992	3	1	582	1	0	0	0	0	1	0	0	0	17965	1812	63	5	258	5	ZNF507	19	32843992	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	31799293	32843992	26284991	100	34235											
ZNF132	7691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	58948571	58948571	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	58948571	C	T	58948571	4	4	582	1	0	0	0	0	0	1	0	0	17734	740	26	2	2053	2	ZNF132	19	58948571	Nonsense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	26104579	58948571	180412	101	34236											
FERMT1	55612	broad.mit.edu;ucsc.edu	37	20	6069695	6069695	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	6069695	C	C	6069695	3	2	582	1	0	0	0	0	1	0	0	0	5824	14	1	5	876	5	FERMT1	20	6069695	Missense_Mutation	SNP	A	TCGA-CZ-5465-01A-01D-1806-10		6069695	56955825	102	34237											
PLK1S1	55857	broad.mit.edu	37	20	21143043	21143043	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	21143043	A	A	21143043	3	1	582	1	0	0	0	0	1	0	0	0	12102	1175	41	2	955	2	PLK1S1	20	21143043	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	15073348	21143043	41882477	103	34238											
TTC3	7267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	38539860	38539860	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	A	38539860	T	A	38539860	3	1	582	1	0	0	0	0	1	0	0	0	16709	1435	50	5	4535	5	TTC3	21	38539860	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10		38539860	9590035	104	34239											
MIOX	55586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50927866	50927867	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	50927867	-	C	50927866	7	5	582	1	0	1	1	0	0	0	0	0	9597	1306	46	0	657	0	MIOX	22	50927866	Frame_Shift_Ins	INS	-	TCGA-CZ-5465-01A-01D-1806-10		50927866	376700	105	34240											
CSF2RA	1438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	1413322	1413322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	1413322	G	T	1413322	3	4	582	1	0	0	0	0	1	0	0	0	3936	1174	41	4	770	4	CSF2RA	23	1413322	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10		1413322	153857238	106	34241											
FAM47A	158724	broad.mit.edu	37	X	34148882	34148882	+	Missense_Mutation	SNP	C	T	T	rs5973089	byfrequency;by1000genomes	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	T	34148882	T	T	34148882	3	4	582	1	0	0	0	0	1	0	0	0	5576	768	27	1	865	1	FAM47A	23	34148882	Missense_Mutation	SNP	C	TCGA-CZ-5465-01A-01D-1806-10	32735560	34148882	121121678	107	34242											
KDM6A	7403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	44879876	44879878	+	In_Frame_Del	DEL	GGT	GGT	-	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	-	44879878	GGT	-	44879876	7	5	582	1	0	1	0	1	0	0	0	0	8144	991	35	0	487	0	KDM6A	23	44879876	In_Frame_Del	DEL	GGT	TCGA-CZ-5465-01A-01D-1806-10	10730994	44879876	110390684	108	34243											
PORCN	64840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48378842	48378842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	G	48378842	T	G	48378842	3	3	582	1	0	0	0	0	1	0	0	0	12265	1435	50	5	1418	5	PORCN	23	48378842	Missense_Mutation	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	3498966	48378842	106891718	109	34244											
SHROOM4	57477	hgsc.bcm.edu	37	X	50350758	50350759	+	In_Frame_Ins	INS	-	-	TGCTGCTGCTGT	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	TGCTGCTGCTGT	50350759	-	TGCTGCTGCTGT	50350758	7	5	582	1	0	1	1	0	0	0	0	0	14309	912	32	0	1113	0	SHROOM4	23	50350758	In_Frame_Ins	INS	-	TCGA-CZ-5465-01A-01D-1806-10	1971916	50350758	104919802	110	34245											
OPHN1	4983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	67413751	67413751	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	67413751	G	C	67413751	3	2	582	1	0	0	0	0	1	0	0	0	10882	1280	45	4	1270	4	OPHN1	23	67413751	Missense_Mutation	SNP	G	TCGA-CZ-5465-01A-01D-1806-10	17062993	67413751	87856809	111	34246											
TRMT2B	79979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	100297051	100297051	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37	d0b450b6-994f-4b30-881c-bb9fa4fdc729	C	100297051	T	C	100297051	2	2	582	1	0	0	0	0	0	0	0	1	16578	1509	53	3		3	TRMT2B	23	100297051	Silent	SNP	T	TCGA-CZ-5465-01A-01D-1806-10	32883300	100297051	54973509	112	34247											
MFSD2A	84879	broad.mit.edu;ucsc.edu	37	1	40435189	40435189	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	40435189	A	A	40435189	3	1	583	1	0	0	0	0	1	0	0	0	9537	709	25	4	1635	4	MFSD2A	1	40435189	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10		40435189	208815432	1	34248											
CDC20	991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43825663	43825663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	43825663	C	T	43825663	3	4	583	1	0	0	0	0	1	0	0	0	3061	565	20	2	465	2	CDC20	1	43825663	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	3390474	43825663	205424958	2	34249											
PRKACB	5567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	84679863	84679863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	84679863	G	T	84679863	3	4	583	1	0	0	0	0	1	0	0	0	12508	942	33	4	1031	4	PRKACB	1	84679863	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	40854200	84679863	164570758	3	34250											
SLC35A3	23443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	100472612	100472612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	100472612	T	C	100472612	3	2	583	1	0	0	0	0	1	0	0	0	14585	1609	56	3	375	3	SLC35A3	1	100472612	Missense_Mutation	SNP	T	TCGA-CZ-5466-01A-01D-1501-10	15792749	100472612	148778009	4	34251											
HRNR	388697	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	152191542	152191542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	152191542	C	T	152191542	3	4	583	1	0	0	0	0	1	0	0	0	7366	652	23	1	5993	1	HRNR	1	152191542	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	51718930	152191542	97059079	5	34252											
KIF14	9928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200587085	200587085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	200587085	T	C	200587085	3	2	583	1	0	0	0	0	1	0	0	0	8283	1464	51	3	4295	3	KIF14	1	200587085	Missense_Mutation	SNP	T	TCGA-CZ-5466-01A-01D-1501-10	48395543	200587085	48663536	6	34253											
KDM5B	10765	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	202733213	202733213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	202733213	G	A	202733213	3	1	583	1	0	0	0	0	1	0	0	0	8141	1145	40	1	3950	1	KDM5B	1	202733213	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	2146128	202733213	46517408	7	34254											
NUAK2	81788	broad.mit.edu;ucsc.edu	37	1	205290624	205290624	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	205290624	A	A	205290624	3	1	583	1	0	0	0	0	1	0	0	0	10720	1348	47	2	1781	2	NUAK2	1	205290624	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	2557411	205290624	43959997	8	34255											
OR11L1	391189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	248004727	248004727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	248004727	G	T	248004727	3	4	583	1	0	0	0	0	1	0	0	0	10937	933	33	4	500	4	OR11L1	1	248004727	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	42714103	248004727	1245894	9	34256											
RANBP2	5903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	109381095	109381095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	109381095	C	T	109381095	3	4	583	1	0	0	0	0	1	0	0	0	13041	838	29	2	4178	2	RANBP2	2	109381095	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10		109381095	133818278	10	34257											
RANBP2	5903	broad.mit.edu	37	2	109383602	109383602	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	109383602	A	A	109383602	3	1	583	1	0	0	0	0	1	0	0	0	13041	1319	46	2	6685	2	RANBP2	2	109383602	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	2507	109383602	133815771	11	34258	445	3									
RANBP2	5903	broad.mit.edu	37	2	109383603	109383603	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	109383603	T	T	109383603	3	4	583	1	0	0	0	0	1	0	0	0	13041	768	27	1	6686	1	RANBP2	2	109383603	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	1	109383603	133815770	12	34259	445	3									
RANBP2	5903	broad.mit.edu	37	2	109383605	109383605	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	109383605	A	A	109383605	3	1	583	1	0	0	0	0	1	0	0	0	13041	1203	42	2	6688	2	RANBP2	2	109383605	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	2	109383605	133815768	13	34260	445	3									
ARL6IP6	151188	hgsc.bcm.edu;ucsc.edu	37	2	153591619	153591620	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	-	153591620	CT	-	153591619	7	5	583	1	0	1	0	1	0	0	0	0	945	681	24	0	576	0	ARL6IP6	2	153591619	Frame_Shift_Del	DEL	CT	TCGA-CZ-5466-01A-01D-1501-10	44208014	153591619	89607754	14	34261											
CAV3	859	broad.mit.edu;ucsc.edu	37	3	8787538	8787538	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	8787538	A	A	8787538	2	1	583	1	0	0	0	0	0	0	0	1	2697	1306	46	2		2	CAV3	3	8787538	Silent	SNP	G	TCGA-CZ-5466-01A-01D-1501-10		8787538	189234892	15	34262											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52643533	52643533	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	52643533	G	T	52643533	4	4	583	1	0	0	0	0	0	1	0	0	11498	1294	45	4	2597	4	PBRM1	3	52643533	Nonsense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	43855995	52643533	145378897	16	34263											
PDGFRA	5156	broad.mit.edu;ucsc.edu	37	4	55155210	55155210	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	55155210	G	G	55155210	3	3	583	1	0	0	0	0	1	0	0	0	11668	739	26	4	2887	4	PDGFRA	4	55155210	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10		55155210	135999066	17	34264											
CCDC158	339965	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77292666	77292666	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	77292666	T	G	77292666	3	3	583	1	0	0	0	0	1	0	0	0	2792	1519	53	5	2352	5	CCDC158	4	77292666	Missense_Mutation	SNP	T	TCGA-CZ-5466-01A-01D-1501-10	22137456	77292666	113861610	18	34265											
SLC9A3	6550	broad.mit.edu;ucsc.edu	37	5	475720	475720	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	475720	T	T	475720	3	4	583	1	0	0	0	0	1	0	0	0	14726	246	9	5	309	5	SLC9A3	5	475720	Missense_Mutation	SNP	A	TCGA-CZ-5466-01A-01D-1501-10		475720	180439540	19	34266											
APC	324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	112178912	112178912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	112178912	A	G	112178912	3	3	583	1	0	0	0	0	1	0	0	0	763	101	4	3	7679	3	APC	5	112178912	Missense_Mutation	SNP	A	TCGA-CZ-5466-01A-01D-1501-10	111703192	112178912	68736348	20	34267											
APBB3	10307	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139942267	139942267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	139942267	C	T	139942267	3	4	583	1	0	0	0	0	1	0	0	0	762	797	28	2	1185	2	APBB3	5	139942267	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	27763355	139942267	40972993	21	34268											
PCDHB1	29930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140432455	140432455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	140432455	C	T	140432455	3	4	583	1	0	0	0	0	1	0	0	0	11541	681	24	2	1402	2	PCDHB1	5	140432455	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	490188	140432455	40482805	22	34269											
DOCK2	1794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	169474616	169474616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	169474616	C	T	169474616	3	4	583	1	0	0	0	0	1	0	0	0	4689	759	27	1	4227	1	DOCK2	5	169474616	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	29042161	169474616	11440644	23	34270											
DBN1	1627	broad.mit.edu;ucsc.edu	37	5	176894265	176894265	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	176894265	A	A	176894265	3	1	583	1	0	0	0	0	1	0	0	0	4254	796	28	4	1439	4	DBN1	5	176894265	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	7419649	176894265	4020995	24	34271											
SLC22A7	10864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43272449	43272449	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	43272449	C	T	43272449	4	4	583	1	0	0	0	0	0	1	0	0	14472	711	25	2	1671	2	SLC22A7	6	43272449	Nonsense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10		43272449	127842618	25	34272											
KIAA1009	22832	hgsc.bcm.edu	37	6	84896316	84896316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	84896316	C	T	84896316	3	4	583	1	0	0	0	0	1	0	0	0	8210	922	32	2	3140	2	KIAA1009	6	84896316	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	41623867	84896316	86218751	26	34273											
MDN1	23195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	90358035	90358035	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	90358035	G	C	90358035	3	2	583	1	0	0	0	0	1	0	0	0	9422	942	33	4	590	4	MDN1	6	90358035	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	5461719	90358035	80757032	27	34274											
ZUFSP	221302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	116981933	116981933	+	Silent	SNP	A	A	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	116981933	A	C	116981933	2	2	583	1	0	0	0	0	0	0	0	1	18258	117	5	5		5	ZUFSP	6	116981933	Silent	SNP	A	TCGA-CZ-5466-01A-01D-1501-10	26623898	116981933	54133134	28	34275											
TNFAIP3	7128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	138201233	138201233	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	138201233	C	T	138201233	2	4	583	1	0	0	0	0	0	0	0	1	16286	813	29	2		2	TNFAIP3	6	138201233	Silent	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	21219300	138201233	32913834	29	34276											
SUN1	23353	broad.mit.edu;ucsc.edu	37	7	905604	905604	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	905604	T	T	905604	3	4	583	1	0	0	0	0	1	0	0	0	15403	1029	36	4	2125	4	SUN1	7	905604	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10		905604	158233059	30	34277											
RABGEF1	27342	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	66260561	66260561	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	66260561	A	T	66260561	3	4	583	1	0	0	0	0	1	0	0	0	12979	333	12	5	591	5	RABGEF1	7	66260561	Missense_Mutation	SNP	A	TCGA-CZ-5466-01A-01D-1501-10	65354957	66260561	92878102	31	34278											
AHCYL2	23382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129045730	129045730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	129045730	G	A	129045730	3	1	583	1	0	0	0	0	1	0	0	0	411	1203	42	2	1352	2	AHCYL2	7	129045730	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	62785169	129045730	30092933	32	34279											
RECK	8434	hgsc.bcm.edu;ucsc.edu	37	9	36091316	36091317	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	36091317	-	T	36091316	7	5	583	1	0	1	1	0	0	0	0	0	13213	565	20	0	1099	0	RECK	9	36091316	Frame_Shift_Ins	INS	-	TCGA-CZ-5466-01A-01D-1501-10		36091316	105122115	33	34280											
C11orf41	0	broad.mit.edu;ucsc.edu	37	11	33628343	33628343	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	33628343	G	G	33628343	3	3	583	1	0	0	0	0	1	0	0	0	1642	304	11	3	4213	3	C11orf41	11	33628343	Missense_Mutation	SNP	A	TCGA-CZ-5466-01A-01D-1501-10		33628343	101378173	34	34281											
AGBL2	79841	broad.mit.edu;ucsc.edu	37	11	47713657	47713657	+	Silent	SNP	T	C	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	47713657	C	C	47713657	2	2	583	1	0	0	0	0	0	0	0	1	376	1548	54	3		3	AGBL2	11	47713657	Silent	SNP	T	TCGA-CZ-5466-01A-01D-1501-10	14085314	47713657	87292859	35	34282											
SLC22A9	114571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	63175623	63175623	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	63175623	T	A	63175623	4	1	583	1	0	0	0	0	0	1	0	0	14474	1764	61	5	1358	5	SLC22A9	11	63175623	Nonsense_Mutation	SNP	T	TCGA-CZ-5466-01A-01D-1501-10	15461966	63175623	71830893	36	34283											
TMEM25	84866	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118404209	118404209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	118404209	G	T	118404209	3	4	583	1	0	0	0	0	1	0	0	0	16162	1145	40	4	762	4	TMEM25	11	118404209	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	55228586	118404209	16602307	37	34284											
HSPA8	3312	broad.mit.edu	37	11	122930276	122930276	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	122930276	G	G	122930276	3	3	583	1	0	0	0	0	1	0	0	0	7423	536	19	4	935	4	HSPA8	11	122930276	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	4526067	122930276	12076240	38	34285											
ZBTB44	29068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	130131008	130131008	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	130131008	A	T	130131008	4	4	583	1	0	0	0	0	0	1	0	0	17557	372	13	5	620	5	ZBTB44	11	130131008	Nonsense_Mutation	SNP	A	TCGA-CZ-5466-01A-01D-1501-10	7200732	130131008	4875508	39	34286											
CLSTN3	9746	broad.mit.edu;ucsc.edu	37	12	7295478	7295478	+	Silent	SNP	G	T	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	7295478	T	T	7295478	2	4	583	1	0	0	0	0	0	0	0	1	3565	1045	37	4		4	CLSTN3	12	7295478	Silent	SNP	G	TCGA-CZ-5466-01A-01D-1501-10		7295478	126556417	40	34287											
DNM1L	10059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	32886681	32886681	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	32886681	T	C	32886681	2	2	583	1	0	0	0	0	0	0	0	1	4673	1413	49	3		3	DNM1L	12	32886681	Silent	SNP	T	TCGA-CZ-5466-01A-01D-1501-10	25591203	32886681	100965214	41	34288											
SLC4A8	9498	broad.mit.edu;ucsc.edu	37	12	51897852	51897852	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	51897852	A	A	51897852	3	1	583	1	0	0	0	0	1	0	0	0	14672	855	30	4	3265	4	SLC4A8	12	51897852	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	19011171	51897852	81954043	42	34289											
MFSD5	84975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53647588	53647588	+	Silent	SNP	C	C	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	53647588	C	G	53647588	2	3	583	1	0	0	0	0	0	0	0	1	9541	900	32	4		4	MFSD5	12	53647588	Silent	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	1749736	53647588	80204307	43	34290											
METTL7B	196410	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56076036	56076036	+	Silent	SNP	G	G	A	rs144071589		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	56076036	G	A	56076036	2	1	583	1	0	0	0	0	0	0	0	1	9513	1130	39	1		1	METTL7B	12	56076036	Silent	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	2428448	56076036	77775859	44	34291											
ITGA7	3679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56096858	56096858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	56096858	T	C	56096858	3	2	583	1	0	0	0	0	1	0	0	0	7888	1638	57	3	3376	3	ITGA7	12	56096858	Missense_Mutation	SNP	T	TCGA-CZ-5466-01A-01D-1501-10	20822	56096858	77755037	45	34292											
AVIL	10677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	58201174	58201174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	58201174	C	G	58201174	3	3	583	1	0	0	0	0	1	0	0	0	1227	854	30	4	1060	4	AVIL	12	58201174	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	2104316	58201174	75650721	46	34293											
DIS3	22894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	73347935	73347935	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	73347935	C	G	73347935	3	3	583	1	0	0	0	0	1	0	0	0	4537	710	25	4	1806	4	DIS3	13	73347935	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10		73347935	41821943	47	34294											
SAMD4A	23034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55203899	55203899	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	55203899	G	A	55203899	2	1	583	1	0	0	0	0	0	0	0	1	13834	1364	48	2		2	SAMD4A	14	55203899	Silent	SNP	G	TCGA-CZ-5466-01A-01D-1501-10		55203899	52145641	48	34295											
DDX24	57062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94519372	94519372	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	94519372	C	T	94519372	2	4	583	1	0	0	0	0	0	0	0	1	4353	912	32	2		2	DDX24	14	94519372	Silent	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	39315473	94519372	12830168	49	34296											
MKRN3	7681	broad.mit.edu;ucsc.edu	37	15	23811842	23811842	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	23811842	T	T	23811842	3	4	583	1	0	0	0	0	1	0	0	0	9615	768	27	1	915	1	MKRN3	15	23811842	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10		23811842	78719550	50	34297											
PRTG	283659	hgsc.bcm.edu;ucsc.edu	37	15	55931919	55931919	+	Missense_Mutation	SNP	C	C	T	rs144541725	by1000genomes	TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	55931919	C	T	55931919	3	4	583	1	0	0	0	0	1	0	0	0	12648	768	27	1	1239	1	PRTG	15	55931919	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	32120077	55931919	46599473	51	34298											
CCNB2	9133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	59408907	59408907	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	59408907	A	T	59408907	4	4	583	1	0	0	0	0	0	1	0	0	2915	247	9	5	638	5	CCNB2	15	59408907	Nonsense_Mutation	SNP	A	TCGA-CZ-5466-01A-01D-1501-10	3476988	59408907	43122485	52	34299											
ZNF609	23060	broad.mit.edu;ucsc.edu	37	15	64967175	64967175	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	64967175	G	G	64967175	3	3	583	1	0	0	0	0	1	0	0	0	18047	739	26	4	2136	4	ZNF609	15	64967175	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	5558268	64967175	37564217	53	34300											
NOMO2	283820	broad.mit.edu	37	16	18573208	18573208	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	18573208	C	C	18573208	3	2	583	1	0	0	0	0	1	0	0	0	10539	1059	37	4	3780	4	NOMO2	16	18573208	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10		18573208	71781545	54	34301											
KIF1C	10749	broad.mit.edu	37	17	4924146	4924146	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	4924146	T	T	4924146	2	4	583	1	0	0	0	0	0	0	0	1	8292	639	23	1		1	KIF1C	17	4924146	Silent	SNP	C	TCGA-CZ-5466-01A-01D-1501-10		4924146	76271064	55	34302											
ABCA6	23460	broad.mit.edu	37	17	67124895	67124895	+	Silent	SNP	G	T	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	67124895	T	T	67124895	2	4	583	1	0	0	0	0	0	0	0	1	36	1335	47	4		4	ABCA6	17	67124895	Silent	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	62200749	67124895	14070315	56	34303	446	2									
ABCA6	23460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	67124896	67124896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	67124896	G	T	67124896	3	4	583	1	0	0	0	0	1	0	0	0	36	1261	44	4	3998	4	ABCA6	17	67124896	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	1	67124896	14070314	57	34304	446	2									
DSEL	92126	broad.mit.edu;ucsc.edu	37	18	65180323	65180323	+	Nonsense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	65180323	C	C	65180323	4	2	583	1	0	0	0	0	0	1	0	0	4777	1294	45	4	2119	4	DSEL	18	65180323	Nonsense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10		65180323	12896925	58	34305											
ZNF426	79088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	9643586	9643586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	9643586	T	G	9643586	3	3	583	1	0	0	0	0	1	0	0	0	17912	1841	64	5	1416	5	ZNF426	19	9643586	Missense_Mutation	SNP	T	TCGA-CZ-5466-01A-01D-1501-10		9643586	49485397	59	34306											
ZFP112	7771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44840845	44840845	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	G	44840845	T	G	44840845	3	3	583	1	0	0	0	0	1	0	0	0	17650	1493	52	5	2580	5	ZFP112	19	44840845	Missense_Mutation	SNP	T	TCGA-CZ-5466-01A-01D-1501-10	35197259	44840845	14288138	60	34307											
SLC24A3	57419	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	19665938	19665938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	C	19665938	G	C	19665938	3	2	583	1	0	0	0	0	1	0	0	0	14480	933	33	4	1303	4	SLC24A3	20	19665938	Missense_Mutation	SNP	G	TCGA-CZ-5466-01A-01D-1501-10		19665938	43359582	61	34308											
YWHAB	7529	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	43533772	43533772	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	43533772	G	A	43533772	2	1	583	1	0	0	0	0	0	0	0	1	17513	1130	39	1		1	YWHAB	20	43533772	Silent	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	23867834	43533772	19491748	62	34309											
PRIC285	0	broad.mit.edu	37	20	62192230	62192230	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	62192230	A	A	62192230	3	1	583	1	0	0	0	0	1	0	0	0	12495	652	23	4	770	4	PRIC285	20	62192230	Missense_Mutation	SNP	C	TCGA-CZ-5466-01A-01D-1501-10	18658458	62192230	833290	63	34310											
CABIN1	23523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24456572	24456572	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	24456572	C	T	24456572	2	4	583	1	0	0	0	0	0	0	0	1	2530	796	28	2		2	CABIN1	22	24456572	Silent	SNP	C	TCGA-CZ-5466-01A-01D-1501-10		24456572	26847994	64	34311											
C22orf30	0	hgsc.bcm.edu;ucsc.edu	37	22	32109361	32109361	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	-	32109361	A	-	32109361	7	5	583	1	0	1	0	1	0	0	0	0	2144	233	9	0	2015	0	C22orf30	22	32109361	Frame_Shift_Del	DEL	A	TCGA-CZ-5466-01A-01D-1501-10	7652789	32109361	19195205	65	34312											
APOBEC3B	9582	broad.mit.edu;hgsc.bcm.edu	37	22	39380188	39380188	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	A	39380188	G	A	39380188	2	1	583	1	0	0	0	0	0	0	0	1	790	933	33	2		2	APOBEC3B	22	39380188	Silent	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	7270827	39380188	11924378	66	34313											
STAG2	10735	hgsc.bcm.edu;ucsc.edu	37	X	123195628	123195629	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	-	123195629	AG	-	123195628	7	5	583	1	0	1	0	1	0	0	0	0	15255	175	7	0	1600	0	STAG2	23	123195628	Frame_Shift_Del	DEL	AG	TCGA-CZ-5466-01A-01D-1501-10		123195628	32074932	67	34314											
SLC25A14	9016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129483276	129483276	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5466-01A-01D-1501-10	TCGA-CZ-5466-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a486ba5e-9159-4b88-9c08-1db2d861ae5a	fd4d5274-674a-4cc7-acc9-355d73b1382f	T	129483276	G	T	129483276	2	4	583	1	0	0	0	0	0	0	0	1	14489	1161	41	4		4	SLC25A14	23	129483276	Silent	SNP	G	TCGA-CZ-5466-01A-01D-1501-10	6287648	129483276	25787284	68	34315											
VHL	7428	hgsc.bcm.edu	37	3	10183781	10183782	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5466-01A-01W-1528-10	TCGA-CZ-5466-11A-01W-1529-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina MiSeq	fa54a534-2a32-474c-8f7b-e38400f0e17b	8f2f6551-1769-408d-8c13-50f6d6ff45d5	T	10183782	-	T	10183781	7	5	584	1	0	1	1	0	0	0	0	0	17174	1145	40	0	252	0	VHL	3	10183781	Frame_Shift_Ins	INS	-	TCGA-CZ-5466-01A-01W-1528-10		10183781	187838649	1	34316											
KIAA1751	85452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	1920343	1920343	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	1920343	T	A	1920343	3	1	585	1	0	0	0	0	1	0	0	0	8263	1667	58	5	2215	5	KIAA1751	1	1920343	Missense_Mutation	SNP	T	TCGA-CZ-5467-01A-01D-1501-10		1920343	247330278	1	34317											
CLCN6	1185	broad.mit.edu;ucsc.edu	37	1	11894635	11894635	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	11894635	G	G	11894635	3	3	585	1	0	0	0	0	1	0	0	0	3469	1696	59	5	1857	5	CLCN6	1	11894635	Missense_Mutation	SNP	T	TCGA-CZ-5467-01A-01D-1501-10	9974292	11894635	237355986	2	34318											
DOCK7	85440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62961314	62961314	+	Silent	SNP	A	A	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	62961314	A	T	62961314	2	4	585	1	0	0	0	0	0	0	0	1	4694	175	7	5		5	DOCK7	1	62961314	Silent	SNP	A	TCGA-CZ-5467-01A-01D-1501-10	51066679	62961314	186289307	3	34319											
TMEM167B	56900	broad.mit.edu;hgsc.bcm.edu	37	1	109635584	109635584	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	109635584	C	G	109635584	3	3	585	1	0	0	0	0	1	0	0	0	16094	681	24	4	89	4	TMEM167B	1	109635584	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	46674270	109635584	139615037	4	34320											
C1orf25	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	185108635	185108635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	C	185108635	A	C	185108635	3	2	585	1	0	0	0	0	1	0	0	0	2036	275	10	5	1043	5	C1orf25	1	185108635	Missense_Mutation	SNP	A	TCGA-CZ-5467-01A-01D-1501-10	75473051	185108635	64141986	5	34321											
SIPA1L2	57568	broad.mit.edu;ucsc.edu	37	1	232607212	232607212	+	Silent	SNP	T	A	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	232607212	A	A	232607212	2	1	585	1	0	0	0	0	0	0	0	1	14343	1683	59	5		5	SIPA1L2	1	232607212	Silent	SNP	T	TCGA-CZ-5467-01A-01D-1501-10	47498577	232607212	16643409	6	34322											
GREB1	9687	broad.mit.edu;ucsc.edu	37	2	11706697	11706697	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	11706697	T	T	11706697	3	4	585	1	0	0	0	0	1	0	0	0	6767	1020	36	4	379	4	GREB1	2	11706697	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10		11706697	231492676	7	34323	447	2									
GREB1	9687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	11706699	11706699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	11706699	C	A	11706699	3	1	585	1	0	0	0	0	1	0	0	0	6767	855	30	4	381	4	GREB1	2	11706699	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	2	11706699	231492674	8	34324	447	2									
LAPTM4A	9741	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	20237323	20237323	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	20237323	T	G	20237323	2	3	585	1	0	0	0	0	0	0	0	1	8631	1799	63	5		5	LAPTM4A	2	20237323	Silent	SNP	T	TCGA-CZ-5467-01A-01D-1501-10	8530624	20237323	222962050	9	34325											
KLRAQ1	0	hgsc.bcm.edu;ucsc.edu	37	2	48692136	48692136	+	RNA	SNP	A	A	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	48692136	A	G	48692136	1	3	585	0	1	0	0	0	0	0	0	0	8420	348	12	3		3	KLRAQ1	2	48692136	RNA	SNP	A	TCGA-CZ-5467-01A-01D-1501-10	28454813	48692136	194507237	10	34326											
ANAPC1	64682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	112625654	112625654	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	C	112625654	A	C	112625654	3	2	585	1	0	0	0	0	1	0	0	0	598	43	2	5	5371	5	ANAPC1	2	112625654	Missense_Mutation	SNP	A	TCGA-CZ-5467-01A-01D-1501-10	63933518	112625654	130573719	11	34327											
NEB	4703	broad.mit.edu;ucsc.edu	37	2	152553192	152553192	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	152553192	A	A	152553192	3	1	585	1	0	0	0	0	1	0	0	0	10309	478	17	4	24822	4	NEB	2	152553192	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	39927538	152553192	90646181	12	34328											
BAZ2B	29994	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	160205332	160205332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	160205332	C	A	160205332	3	1	585	1	0	0	0	0	1	0	0	0	1332	507	18	4	1388	4	BAZ2B	2	160205332	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	7652140	160205332	82994041	13	34329											
C2orf67	0	broad.mit.edu	37	2	210887820	210887820	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	210887820	G	G	210887820	3	3	585	1	0	0	0	0	1	0	0	0	2188	680	24	4	150	4	C2orf67	2	210887820	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	50682488	210887820	32311553	14	34330											
GLT8D1	55830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52729443	52729443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	C	52729443	T	C	52729443	3	2	585	1	0	0	0	0	1	0	0	0	6476	1493	52	3	321	3	GLT8D1	3	52729443	Missense_Mutation	SNP	T	TCGA-CZ-5467-01A-01D-1501-10		52729443	145292987	15	34331											
ARHGEF3	50650	broad.mit.edu;hgsc.bcm.edu	37	3	56789107	56789107	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	C	56789107	G	C	56789107	3	2	585	1	0	0	0	0	1	0	0	0	904	1232	43	4	1335	4	ARHGEF3	3	56789107	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10	4059664	56789107	141233323	16	34332											
NLGN1	22871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	173322838	173322838	+	Silent	SNP	C	C	T	rs140286287		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	173322838	C	T	173322838	2	4	585	1	0	0	0	0	0	0	0	1	10468	767	27	1		1	NLGN1	3	173322838	Silent	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	116533731	173322838	24699592	17	34333											
PDGFRA	5156	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	55131181	55131181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	55131181	G	T	55131181	3	4	585	1	0	0	0	0	1	0	0	0	11668	1261	44	4	738	4	PDGFRA	4	55131181	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10		55131181	136023095	18	34334											
ANKRD17	26057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	73985963	73985963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	73985963	G	T	73985963	3	4	585	1	0	0	0	0	1	0	0	0	646	1000	35	4	3926	4	ANKRD17	4	73985963	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10	18854782	73985963	117168313	19	34335											
ANKRD55	79722	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	55412459	55412459	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	55412459	G	T	55412459	2	4	585	1	0	0	0	0	0	0	0	1	681	1161	41	4		4	ANKRD55	5	55412459	Silent	SNP	G	TCGA-CZ-5467-01A-01D-1501-10		55412459	125502801	20	34336											
VCAN	1462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	82835015	82835015	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	82835015	G	T	82835015	4	4	585	1	0	0	0	0	0	1	0	0	17150	943	33	4	6219	4	VCAN	5	82835015	Nonsense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10	27422556	82835015	98080245	21	34337											
C6orf27	0	broad.mit.edu	37	6	31744362	31744362	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	-	31744362	-	-	31744362	7	5	585	1	0	1	0	1	0	0	0	0	2364	1683	59	0	2543	0	C6orf27	6	31744362	Frame_Shift_Del	DEL	T	TCGA-CZ-5467-01A-01D-1501-10		31744362	139370705	22	34338											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	56469946	56469946	+	Intron	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	56469946	C	T	56469946	1	4	585	0	1	0	0	0	0	0	0	0	4785	638	22	2		2	DST	6	56469946	Intron	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	24725584	56469946	114645121	23	34339											
LAMA2	3908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	129588336	129588336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	129588336	C	A	129588336	3	1	585	1	0	0	0	0	1	0	0	0	8613	855	30	4	2356	4	LAMA2	6	129588336	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	73118390	129588336	41526731	24	34340											
GGCT	79017	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	30538534	30538534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	30538534	C	T	30538534	3	4	585	1	0	0	0	0	1	0	0	0	6362	855	30	2	266	2	GGCT	7	30538534	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10		30538534	128600129	25	34341											
GRB10	2887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	50737542	50737542	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	50737542	G	A	50737542	2	1	585	1	0	0	0	0	0	0	0	1	6763	1252	44	2		2	GRB10	7	50737542	Silent	SNP	G	TCGA-CZ-5467-01A-01D-1501-10	20199008	50737542	108401121	26	34342											
C7orf66	154907	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	108524166	108524166	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	108524166	A	G	108524166	2	3	585	1	0	0	0	0	0	0	0	1	2414	242	9	3		3	C7orf66	7	108524166	Silent	SNP	A	TCGA-CZ-5467-01A-01D-1501-10	57786624	108524166	50614497	27	34343											
GOLM1	51280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	88692459	88692459	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	88692459	C	T	88692459	2	4	585	1	0	0	0	0	0	0	0	1	6574	912	32	2		2	GOLM1	9	88692459	Silent	SNP	C	TCGA-CZ-5467-01A-01D-1501-10		88692459	52520972	28	34344											
BMI1	648	broad.mit.edu	37	10	22605369	22605369	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	22605369	G	G	22605369	3	3	585	1	0	0	0	0	1	0	0	0	1455	188	7	3		3	BMI1	10	22605369	Missense_Mutation	SNP	A	TCGA-CZ-5467-01A-01D-1501-10		22605369	112929378	29	34345											
ARMC4	55130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	28274097	28274097	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	28274097	A	G	28274097	2	3	585	1	0	0	0	0	0	0	0	1	953	446	16	3		3	ARMC4	10	28274097	Silent	SNP	A	TCGA-CZ-5467-01A-01D-1501-10	5668728	28274097	107260650	30	34346											
ALDH18A1	5832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	97373858	97373858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	C	97373858	T	C	97373858	3	2	585	1	0	0	0	0	1	0	0	0	489	1464	51	3	741	3	ALDH18A1	10	97373858	Missense_Mutation	SNP	T	TCGA-CZ-5467-01A-01D-1501-10	69099761	97373858	38160889	31	34347											
HPSE2	60495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	100904018	100904018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	100904018	G	A	100904018	3	1	585	1	0	0	0	0	1	0	0	0	7352	1029	36	2	1269	2	HPSE2	10	100904018	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10	3530160	100904018	34630729	32	34348											
TRAF6	7189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	36514141	36514141	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	-	36514141	G	-	36514141	7	5	585	1	0	1	0	1	0	0	0	0	16457	1348	47	0	860	0	TRAF6	11	36514141	Frame_Shift_Del	DEL	G	TCGA-CZ-5467-01A-01D-1501-10		36514141	98492375	33	34349											
OR5J2	282775	hgsc.bcm.edu;ucsc.edu	37	11	55944758	55944759	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	55944759	-	T	55944758	7	5	585	1	0	1	1	0	0	0	0	0	11172	797	28	0	667	0	OR5J2	11	55944758	Frame_Shift_Ins	INS	-	TCGA-CZ-5467-01A-01D-1501-10	19430617	55944758	79061758	34	34350											
INCENP	3619	broad.mit.edu	37	11	61897352	61897352	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	61897352	A	A	61897352	3	1	585	1	0	0	0	0	1	0	0	0	7740	1203	42	2	363	2	INCENP	11	61897352	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10	5952594	61897352	73109164	35	34351											
ARHGAP20	57569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	110451792	110451792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	110451792	G	T	110451792	3	4	585	1	0	0	0	0	1	0	0	0	870	1252	44	4	1701	4	ARHGAP20	11	110451792	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10	48554440	110451792	24554724	36	34352											
ACVR1B	91	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52374764	52374764	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	52374764	T	G	52374764	3	3	585	1	0	0	0	0	1	0	0	0	221	1609	56	5	606	5	ACVR1B	12	52374764	Missense_Mutation	SNP	T	TCGA-CZ-5467-01A-01D-1501-10		52374764	81477131	37	34353											
ITGB7	3695	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53594099	53594099	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	53594099	C	T	53594099	2	4	585	1	0	0	0	0	0	0	0	1	7907	494	18	2		2	ITGB7	12	53594099	Silent	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	1219335	53594099	80257796	38	34354											
NT5DC3	51559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104179176	104179176	+	Silent	SNP	C	C	A	rs61752308	alternate_allele	TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	104179176	C	A	104179176	2	1	585	1	0	0	0	0	0	0	0	1	10699	639	23	4		4	NT5DC3	12	104179176	Silent	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	50585077	104179176	29672719	39	34355											
GPC5	2262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	92345927	92345927	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	92345927	T	A	92345927	3	1	585	1	0	0	0	0	1	0	0	0	6608	1464	51	5	822	5	GPC5	13	92345927	Missense_Mutation	SNP	T	TCGA-CZ-5467-01A-01D-1501-10		92345927	22823951	40	34356											
GPC6	10082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	94482723	94482723	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	94482723	C	T	94482723	2	4	585	1	0	0	0	0	0	0	0	1	6609	610	22	2		2	GPC6	13	94482723	Silent	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	2136796	94482723	20687155	41	34357											
SAMD4A	23034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55218223	55218223	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	55218223	G	T	55218223	4	4	585	1	0	0	0	0	0	1	0	0	13834	943	33	4	1159	4	SAMD4A	14	55218223	Nonsense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10		55218223	52131317	42	34358											
RYR3	6263	broad.mit.edu;ucsc.edu	37	15	33916176	33916176	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	33916176	T	T	33916176	3	4	585	1	0	0	0	0	1	0	0	0	13783	1020	36	4	2604	4	RYR3	15	33916176	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10		33916176	68615216	43	34359											
RPUSD2	27079	broad.mit.edu;ucsc.edu	37	15	40866002	40866002	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	40866002	G	G	40866002	3	3	585	1	0	0	0	0	1	0	0	0	13680	1580	55	5	1190	5	RPUSD2	15	40866002	Missense_Mutation	SNP	T	TCGA-CZ-5467-01A-01D-1501-10	6949826	40866002	61665390	44	34360											
PRTG	283659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	55964783	55964783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	55964783	A	G	55964783	3	3	585	1	0	0	0	0	1	0	0	0	12648	101	4	3	1591	3	PRTG	15	55964783	Missense_Mutation	SNP	A	TCGA-CZ-5467-01A-01D-1501-10	15098781	55964783	46566609	45	34361											
MT1X	4501	broad.mit.edu;ucsc.edu	37	16	56717110	56717110	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	56717110	A	A	56717110	3	1	585	1	0	0	0	0	1	0	0	0	9911	1319	46	2	68	2	MT1X	16	56717110	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10		56717110	33637643	46	34362	448	2									
MT1X	4501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	56717111	56717111	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	56717111	C	T	56717111	2	4	585	1	0	0	0	0	0	0	0	1	9911	718	25	2		2	MT1X	16	56717111	Silent	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	1	56717111	33637642	47	34363	448	2									
MPHOSPH6	10200	hgsc.bcm.edu;ucsc.edu	37	16	82185072	82185074	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	-	82185074	AGA	-	82185072	7	5	585	1	0	1	0	1	0	0	0	0	9733	304	11	0	282	0	MPHOSPH6	16	82185072	In_Frame_Del	DEL	AGA	TCGA-CZ-5467-01A-01D-1501-10	25467961	82185072	8169681	48	34364											
ZCCHC14	23174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	87493727	87493727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	G	87493727	C	G	87493727	3	3	585	1	0	0	0	0	1	0	0	0	17595	913	32	4	2727	4	ZCCHC14	16	87493727	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	5308655	87493727	2861026	49	34365											
SARM1	23098	broad.mit.edu;ucsc.edu	37	17	26686415	26686415	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	26686415	T	T	26686415	2	4	585	1	0	0	0	0	0	0	0	1	13855	535	19	1		1	SARM1	17	26686415	Silent	SNP	C	TCGA-CZ-5467-01A-01D-1501-10		26686415	54508795	50	34366											
TAF15	8148	hgsc.bcm.edu	37	17	34171703	34171726	+	In_Frame_Del	DEL	GAGGAGGCGGCTATGGAGGAGACC	GAGGAGGCGGCTATGGAGGAGACC	-	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	GAGGAGGCGGCTATGGAGGAGACC	GAGGAGGCGGCTATGGAGGAGACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	-	34171726	GAGGAGGCGGCTATGGAGGAGACC	-	34171703	7	5	585	1	0	1	0	1	0	0	0	0	15530	942	33	0	1458	0	TAF15	17	34171703	In_Frame_Del	DEL	GAGGAGGCGGCTATGGAGGAGACC	TCGA-CZ-5467-01A-01D-1501-10	7485288	34171703	47023507	51	34367											
HOXB6	3216	broad.mit.edu;ucsc.edu	37	17	46673821	46673821	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	46673821	A	A	46673821	3	1	585	1	0	0	0	0	1	0	0	0	7312	1087	38	1	49	1	HOXB6	17	46673821	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10	12502118	46673821	34521389	52	34368											
RPS6KB1	6198	broad.mit.edu;hgsc.bcm.edu	37	17	58022845	58022845	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	58022845	C	T	58022845	4	4	585	1	0	0	0	0	0	1	0	0	13669	876	31	1	1360	1	RPS6KB1	17	58022845	Nonsense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	11349024	58022845	23172365	53	34369											
CHST9	83539	broad.mit.edu;hgsc.bcm.edu	37	18	24496333	24496333	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	C	24496333	G	C	24496333	3	2	585	1	0	0	0	0	1	0	0	0	3413	1299	45	4	113	4	CHST9	18	24496333	Missense_Mutation	SNP	G	TCGA-CZ-5467-01A-01D-1501-10		24496333	53580915	54	34370											
ZBTB7C	201501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	45567044	45567044	+	Silent	SNP	G	G	A	rs144374638		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	45567044	G	A	45567044	2	1	585	1	0	0	0	0	0	0	0	1	17567	1136	40	1		1	ZBTB7C	18	45567044	Silent	SNP	G	TCGA-CZ-5467-01A-01D-1501-10	21070711	45567044	32510204	55	34371											
DBP	1628	broad.mit.edu	37	19	49134131	49134131	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	49134131	T	T	49134131	3	4	585	1	0	0	0	0	1	0	0	0	4258	159	6	5	40	5	DBP	19	49134131	Missense_Mutation	SNP	A	TCGA-CZ-5467-01A-01D-1501-10		49134131	9994852	56	34372											
NLRP2	55655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	55489137	55489137	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	55489137	C	T	55489137	4	4	585	1	0	0	0	0	0	1	0	0	10484	528	19	1	353	1	NLRP2	19	55489137	Nonsense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	6355006	55489137	3639846	57	34373											
NLRP9	338321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56243988	56243988	+	Silent	SNP	A	A	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	56243988	A	T	56243988	2	4	585	1	0	0	0	0	0	0	0	1	10491	10	1	5		5	NLRP9	19	56243988	Silent	SNP	A	TCGA-CZ-5467-01A-01D-1501-10	754851	56243988	2884995	58	34374											
TRPC4AP	26133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33595391	33595391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	33595391	C	T	33595391	3	4	585	1	0	0	0	0	1	0	0	0	16593	710	25	2	769	2	TRPC4AP	20	33595391	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10		33595391	29430129	59	34375											
SFRS15	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	33074137	33074137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	33074137	A	T	33074137	3	4	585	1	0	0	0	0	1	0	0	0	14184	214	8	5	2951	5	SFRS15	21	33074137	Missense_Mutation	SNP	A	TCGA-CZ-5467-01A-01D-1501-10		33074137	15055758	60	34376											
MICAL3	57553	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	18376628	18376628	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	18376628	G	A	18376628	2	1	585	1	0	0	0	0	0	0	0	1	9578	991	35	2		2	MICAL3	22	18376628	Silent	SNP	G	TCGA-CZ-5467-01A-01D-1501-10		18376628	32927938	61	34377											
RFPL2	10739	broad.mit.edu;hgsc.bcm.edu	37	22	32589043	32589043	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	32589043	C	T	32589043	2	4	585	1	0	0	0	0	0	0	0	1	13267	610	22	2		2	RFPL2	22	32589043	Silent	SNP	C	TCGA-CZ-5467-01A-01D-1501-10	14212415	32589043	18715523	62	34378											
CFP	5199	broad.mit.edu	37	X	47487501	47487501	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	T	47487501	T	T	47487501	3	4	585	1	0	0	0	0	1	0	0	0	3295	608	21	2	1034	2	CFP	23	47487501	Missense_Mutation	SNP	C	TCGA-CZ-5467-01A-01D-1501-10		47487501	107783059	63	34379											
KDM5C	8242	broad.mit.edu;hgsc.bcm.edu	37	X	53246339	53246339	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	53246339	T	A	53246339	4	1	585	1	0	0	0	0	0	1	0	0	8142	1559	54	5	4225	5	KDM5C	23	53246339	Nonsense_Mutation	SNP	T	TCGA-CZ-5467-01A-01D-1501-10	5758838	53246339	102024221	64	34380											
ZNF449	203523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	134483227	134483227	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5467-01A-01D-1501-10	TCGA-CZ-5467-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	99c640a3-660f-4723-bf82-36fcb3134356	7021632c-f0b7-406b-b839-984c10966fe5	A	134483227	T	A	134483227	3	1	585	1	0	0	0	0	1	0	0	0	17932	1609	56	5	553	5	ZNF449	23	134483227	Missense_Mutation	SNP	T	TCGA-CZ-5467-01A-01D-1501-10	81236888	134483227	20787333	65	34381											
KLHL17	339451	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	900441	900441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	900441	G	A	900441	3	1	586	1	0	0	0	0	1	0	0	0	8379	1000	35	2	1845	2	KLHL17	1	900441	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		900441	248350180	1	34382											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	19471346	19471346	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	19471346	G	A	19471346	2	1	586	1	0	0	0	0	0	0	0	1	16916	1024	36	2		2	UBR4	1	19471346	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	18570905	19471346	229779275	2	34383											
WDR65	149465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	43649511	43649511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	43649511	G	A	43649511	3	1	586	1	0	0	0	0	1	0	0	0	17328	1348	47	2	734	2	WDR65	1	43649511	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	24178165	43649511	205601110	3	34384											
MUTYH	4595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	45796197	45796197	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	-	45796197	C	-	45796197	7	5	586	1	0	1	0	1	0	0	0	0	10000	842	30	0	148	0	MUTYH	1	45796197	Frame_Shift_Del	DEL	C	TCGA-CZ-5468-01A-01D-1501-10	2146686	45796197	203454424	4	34385											
TOE1	114034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	45808092	45808092	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	45808092	T	G	45808092	3	3	586	1	0	0	0	0	1	0	0	0	16361	1493	52	5	551	5	TOE1	1	45808092	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	11895	45808092	203442529	5	34386											
ABCA4	24	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94466632	94466632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	94466632	C	A	94466632	3	1	586	1	0	0	0	0	1	0	0	0	34	680	24	4	529	4	ABCA4	1	94466632	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	48658540	94466632	154783989	6	34387											
ABCA4	24	broad.mit.edu;hgsc.bcm.edu	37	1	94568687	94568687	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	94568687	G	A	94568687	4	1	586	1	0	0	0	0	0	1	0	0	34	1153	40	1	6551	1	ABCA4	1	94568687	Nonsense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	102055	94568687	154681934	7	34388											
ADORA3	140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	112031474	112031474	+	Silent	SNP	G	G	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	112031474	G	C	112031474	2	2	586	1	0	0	0	0	0	0	0	1	329	1219	43	4		4	ADORA3	1	112031474	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	17462787	112031474	137219147	8	34389											
RPRD2	23248	broad.mit.edu;ucsc.edu	37	1	150445629	150445629	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	150445629	A	A	150445629	4	1	586	1	0	0	0	0	0	1	0	0	13630	838	29	4	4247	4	RPRD2	1	150445629	Nonsense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	38414155	150445629	98804992	9	34390											
DENND4B	9909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153913052	153913052	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	153913052	A	T	153913052	3	4	586	1	0	0	0	0	1	0	0	0	4436	420	15	5	3209	5	DENND4B	1	153913052	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	3467423	153913052	95337569	10	34391											
FLAD1	80308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154960848	154960848	+	Missense_Mutation	SNP	G	G	A	rs145054820	bycluster;byfrequency;by1000genomes	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	154960848	G	A	154960848	3	1	586	1	0	0	0	0	1	0	0	0	5927	1000	35	2	721	2	FLAD1	1	154960848	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	1047796	154960848	94289773	11	34392											
GBA	2629	broad.mit.edu;hgsc.bcm.edu	37	1	155205090	155205090	+	Silent	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	155205090	A	T	155205090	2	4	586	1	0	0	0	0	0	0	0	1	6273	175	7	5		5	GBA	1	155205090	Silent	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	244242	155205090	94045531	12	34393											
TNR	7143	broad.mit.edu;ucsc.edu	37	1	175355202	175355202	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	175355202	A	A	175355202	2	1	586	1	0	0	0	0	0	0	0	1	16350	1136	40	1		1	TNR	1	175355202	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	20150112	175355202	73895419	13	34394											
CFHR3	10878	broad.mit.edu;hgsc.bcm.edu	37	1	196762628	196762628	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	196762628	C	T	196762628	2	4	586	1	0	0	0	0	0	0	0	1	3288	518	18	2		2	CFHR3	1	196762628	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	21407426	196762628	52487993	14	34395											
KDM5B	10765	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	202725626	202725626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	202725626	C	A	202725626	3	1	586	1	0	0	0	0	1	0	0	0	8141	478	17	4	3490	4	KDM5B	1	202725626	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	5962998	202725626	46524995	15	34396											
CDC42BPA	8476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	227288695	227288695	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	227288695	T	C	227288695	2	2	586	1	0	0	0	0	0	0	0	1	3074	1838	64	3		3	CDC42BPA	1	227288695	Silent	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	24563069	227288695	21961926	16	34397											
PXDN	7837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	1642647	1642647	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	1642647	G	C	1642647	3	2	586	1	0	0	0	0	1	0	0	0	12860	1328	46	4	274	4	PXDN	2	1642647	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		1642647	241556726	17	34398											
ROCK2	9475	hgsc.bcm.edu;ucsc.edu	37	2	11389808	11389814	+	Frame_Shift_Del	DEL	GGCAAAG	GGCAAAG	-	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	GGCAAAG	GGCAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	-	11389814	GGCAAAG	-	11389808	7	5	586	1	0	1	0	1	0	0	0	0	13531	1335	47	0	3845	0	ROCK2	2	11389808	Frame_Shift_Del	DEL	GGCAAAG	TCGA-CZ-5468-01A-01D-1501-10	9747161	11389808	231809565	18	34399											
BRE	9577	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	28532988	28532988	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	28532988	C	T	28532988	2	4	586	1	0	0	0	0	0	0	0	1	1511	668	24	2		2	BRE	2	28532988	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	17143180	28532988	214666385	19	34400											
NRXN1	9378	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	50733648	50733648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	50733648	G	T	50733648	3	4	586	1	0	0	0	0	1	0	0	0	10672	1357	47	4	2348	4	NRXN1	2	50733648	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	22200660	50733648	192465725	20	34401											
USP34	9736	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61431456	61431456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	61431456	T	C	61431456	3	2	586	1	0	0	0	0	1	0	0	0	17077	1812	63	3	1349	3	USP34	2	61431456	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	10697808	61431456	181767917	21	34402											
B3GNT2	10678	broad.mit.edu	37	2	62450343	62450343	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	62450343	T	T	62450343	3	4	586	1	0	0	0	0	1	0	0	0	1257	623	22	2	990	2	B3GNT2	2	62450343	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	1018887	62450343	180749030	22	34403											
C2orf65	130951	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	74808954	74808954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	74808954	C	T	74808954	3	4	586	1	0	0	0	0	1	0	0	0	2186	826	29	2	1004	2	C2orf65	2	74808954	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	12358611	74808954	168390419	23	34404											
KIAA1310	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	97285435	97285435	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	97285435	G	T	97285435	2	4	586	1	0	0	0	0	0	0	0	1	8229	1115	39	4		4	KIAA1310	2	97285435	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	22476481	97285435	145913938	24	34405											
INPP4A	3631	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	99155379	99155379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	99155379	T	G	99155379	3	3	586	1	0	0	0	0	1	0	0	0	7759	1821	63	5	631	5	INPP4A	2	99155379	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	1869944	99155379	144043994	25	34406											
FHL2	2274	broad.mit.edu;ucsc.edu	37	2	105977880	105977880	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	105977880	C	C	105977880	3	2	586	1	0	0	0	0	1	0	0	0	5886	1696	59	3	143	3	FHL2	2	105977880	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	6822501	105977880	137221493	26	34407											
GCC2	9648	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	109100625	109100625	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	109100625	G	C	109100625	3	2	586	1	0	0	0	0	1	0	0	0	6293	1281	45	4	3521	4	GCC2	2	109100625	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	3122745	109100625	134098748	27	34408											
WDR33	55339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	128477700	128477700	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	128477700	T	A	128477700	2	1	586	1	0	0	0	0	0	0	0	1	17299	1654	58	5		5	WDR33	2	128477700	Silent	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	19377075	128477700	114721673	28	34409											
NFE2L2	4780	broad.mit.edu	37	2	178095480	178095480	+	3'UTR	SNP	A	T	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	178095480	T	T	178095480	1	4	586	0	1	0	0	0	0	0	0	0	10375	29	1	5		5	NFE2L2	2	178095480	3'UTR	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	49617780	178095480	65103893	29	34410											
ABCA12	26154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	215838696	215838696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	215838696	A	C	215838696	3	2	586	1	0	0	0	0	1	0	0	0	30	130	5	5	2320	5	ABCA12	2	215838696	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	37743216	215838696	27360677	30	34411											
RNF25	64320	hgsc.bcm.edu	37	2	219529592	219529592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	219529592	A	G	219529592	3	3	586	1	0	0	0	0	1	0	0	0	13498	188	7	3	716	3	RNF25	2	219529592	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	3690896	219529592	23669781	31	34412											
DOCK10	55619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	225668898	225668898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	225668898	G	T	225668898	3	4	586	1	0	0	0	0	1	0	0	0	4687	1174	41	4	2433	4	DOCK10	2	225668898	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	6139306	225668898	17530475	32	34413											
UGT1A8	54576	broad.mit.edu;hgsc.bcm.edu	37	2	234526756	234526757	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	234526757	-	A	234526756	7	5	586	1	0	1	1	0	0	0	0	0	16963	943	33	0	405	0	UGT1A8	2	234526756	Frame_Shift_Ins	INS	-	TCGA-CZ-5468-01A-01D-1501-10	8857858	234526756	8672617	33	34414											
CAND2	23066	broad.mit.edu	37	3	12856884	12856884	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	12856884	T	T	12856884	3	4	586	1	0	0	0	0	1	0	0	0	2618	1348	47	4	1281	4	CAND2	3	12856884	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		12856884	185165546	34	34415											
TTC21A	199223	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	39179047	39179047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	39179047	G	T	39179047	3	4	586	1	0	0	0	0	1	0	0	0	16699	1145	40	4	3647	4	TTC21A	3	39179047	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	26322163	39179047	158843383	35	34416											
CADPS	8618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	62385148	62385148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	62385148	C	A	62385148	3	1	586	1	0	0	0	0	1	0	0	0	2572	565	20	4	70	4	CADPS	3	62385148	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	23206101	62385148	135637282	36	34417											
ZPLD1	131368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	102181210	102181210	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	102181210	A	C	102181210	3	2	586	1	0	0	0	0	1	0	0	0	18233	101	4	5	738	5	ZPLD1	3	102181210	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	39796062	102181210	95841220	37	34418											
LXN	56925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	158387254	158387254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	158387254	A	G	158387254	3	3	586	1	0	0	0	0	1	0	0	0	9096	217	8	3	346	3	LXN	3	158387254	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	56206044	158387254	39635176	38	34419											
BCHE	590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	165503969	165503969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	165503969	A	T	165503969	3	4	586	1	0	0	0	0	1	0	0	0	1358	188	7	5	168	5	BCHE	3	165503969	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	7116715	165503969	32518461	39	34420											
ZBBX	79740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	167000224	167000224	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	167000224	T	G	167000224	3	3	586	1	0	0	0	0	1	0	0	0	17528	1609	56	5	475	5	ZBBX	3	167000224	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	1496255	167000224	31022206	40	34421											
ECT2	1894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	172502507	172502507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	172502507	C	G	172502507	3	3	586	1	0	0	0	0	1	0	0	0	4903	710	25	4	1704	4	ECT2	3	172502507	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	5502283	172502507	25519923	41	34422											
CPZ	8532	broad.mit.edu;ucsc.edu	37	4	8609117	8609117	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	8609117	A	A	8609117	3	1	586	1	0	0	0	0	1	0	0	0	3841	1175	41	2	1218	2	CPZ	4	8609117	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		8609117	182545159	42	34423											
PRKG2	5593	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	82126026	82126026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	82126026	G	A	82126026	3	1	586	1	0	0	0	0	1	0	0	0	12533	1059	37	1	2184	1	PRKG2	4	82126026	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	73516909	82126026	109028250	43	34424											
HERC3	8916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	89607937	89607937	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	89607937	T	A	89607937	3	1	586	1	0	0	0	0	1	0	0	0	7066	1783	62	5	2636	5	HERC3	4	89607937	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	7481911	89607937	101546339	44	34425											
C4orf29	80167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	128905506	128905506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	128905506	C	A	128905506	3	1	586	1	0	0	0	0	1	0	0	0	2261	825	29	4	111	4	C4orf29	4	128905506	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	39297569	128905506	62248770	45	34426											
ACSL1	2180	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	185694256	185694256	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	185694256	T	C	185694256	2	2	586	1	0	0	0	0	0	0	0	1	177	1567	55	3		3	ACSL1	4	185694256	Silent	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	56788750	185694256	5460020	46	34427											
ANKRD55	79722	broad.mit.edu;ucsc.edu	37	5	55407454	55407454	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	55407454	C	C	55407454	3	2	586	1	0	0	0	0	1	0	0	0	681	1667	58	3	735	3	ANKRD55	5	55407454	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10		55407454	125507806	47	34428											
VCAN	1462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	82815673	82815673	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	82815673	T	G	82815673	2	3	586	1	0	0	0	0	0	0	0	1	17150	1567	55	5		5	VCAN	5	82815673	Silent	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	27408219	82815673	98099587	48	34429											
ANKRD32	84250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	93987546	93987546	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	93987546	A	C	93987546	3	2	586	1	0	0	0	0	1	0	0	0	660	101	4	5	900	5	ANKRD32	5	93987546	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	11171873	93987546	86927714	49	34430											
APC	324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	112176941	112176941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	112176941	G	T	112176941	3	4	586	1	0	0	0	0	1	0	0	0	763	1203	42	4	5708	4	APC	5	112176941	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	18189395	112176941	68738319	50	34431											
SEC24A	10802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	134002663	134002663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	134002663	T	A	134002663	3	1	586	1	0	0	0	0	1	0	0	0	14007	1841	64	5	726	5	SEC24A	5	134002663	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	21825722	134002663	46912597	51	34432											
TRPC7	57113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	135561036	135561036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	135561036	G	C	135561036	3	2	586	1	0	0	0	0	1	0	0	0	16596	1058	37	4	331	4	TRPC7	5	135561036	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	1558373	135561036	45354224	52	34433											
RBM27	54439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	145643071	145643071	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	145643071	G	C	145643071	3	2	586	1	0	0	0	0	1	0	0	0	13140	933	33	4	2262	4	RBM27	5	145643071	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	10082035	145643071	35272189	53	34434											
UBLCP1	134510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	158697539	158697539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	158697539	A	T	158697539	3	4	586	1	0	0	0	0	1	0	0	0	16903	69	3	5	350	5	UBLCP1	5	158697539	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	13054468	158697539	22217721	54	34435											
DRD1	1812	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	174869226	174869226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	174869226	A	T	174869226	3	4	586	1	0	0	0	0	1	0	0	0	4758	188	7	5	467	5	DRD1	5	174869226	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	16171687	174869226	6046034	55	34436											
DPCR1	135656	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	30916609	30916609	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	30916609	A	T	30916609	3	4	586	1	0	0	0	0	1	0	0	0	4714	246	9	5	374	5	DPCR1	6	30916609	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10		30916609	140198458	56	34437											
PHF3	23469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	64395089	64395089	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	64395089	A	T	64395089	3	4	586	1	0	0	0	0	1	0	0	0	11843	14	1	5	1476	5	PHF3	6	64395089	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	33478480	64395089	106719978	57	34438											
ASCC3	10973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	101248212	101248212	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	101248212	A	T	101248212	3	4	586	1	0	0	0	0	1	0	0	0	1033	72	3	5	5665	5	ASCC3	6	101248212	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	36853123	101248212	69866855	58	34439											
REV3L	5980	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	111694884	111694885	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	111694885	-	T	111694884	7	5	586	1	0	1	1	0	0	0	0	0	13253	446	16	0	4798	0	REV3L	6	111694884	Frame_Shift_Ins	INS	-	TCGA-CZ-5468-01A-01D-1501-10	10446672	111694884	59420183	59	34440											
CDK13	8621	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	40134425	40134425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	40134425	A	G	40134425	3	3	586	1	0	0	0	0	1	0	0	0	3131	449	16	3	4439	3	CDK13	7	40134425	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10		40134425	119004238	60	34441											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82595299	82595299	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	-	82595299	C	-	82595299	7	5	586	1	0	1	0	1	0	0	0	0	11590	565	20	0	11728	0	PCLO	7	82595299	Frame_Shift_Del	DEL	C	TCGA-CZ-5468-01A-01D-1501-10	42460874	82595299	76543364	61	34442											
ZNF804B	219578	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	88966113	88966113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	88966113	G	A	88966113	3	1	586	1	0	0	0	0	1	0	0	0	18183	1319	46	2	3831	2	ZNF804B	7	88966113	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	6370814	88966113	70172550	62	34443											
CNPY4	245812	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	99722440	99722440	+	Missense_Mutation	SNP	G	G	C	rs187806620	by1000genomes;alternate_allele	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	99722440	G	C	99722440	3	2	586	1	0	0	0	0	1	0	0	0	3632	1175	41	4	698	4	CNPY4	7	99722440	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	10756327	99722440	59416223	63	34444											
PSMC2	5701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	103008447	103008447	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	103008447	C	T	103008447	2	4	586	1	0	0	0	0	0	0	0	1	12696	813	29	2		2	PSMC2	7	103008447	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	3286007	103008447	56130216	64	34445											
RELN	5649	hgsc.bcm.edu;ucsc.edu	37	7	103293088	103293088	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	-	103293088	A	-	103293088	7	5	586	1	0	1	0	1	0	0	0	0	13233	246	9	0	8917	0	RELN	7	103293088	Frame_Shift_Del	DEL	A	TCGA-CZ-5468-01A-01D-1501-10	284641	103293088	55845575	65	34446											
ASB15	142685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	123267202	123267202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	123267202	G	T	123267202	3	4	586	1	0	0	0	0	1	0	0	0	1019	1261	44	4	758	4	ASB15	7	123267202	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	19974114	123267202	35871461	66	34447											
CCDC136	64753	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	128434749	128434749	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	128434749	G	A	128434749	2	1	586	1	0	0	0	0	0	0	0	1	2772	1217	42	2		2	CCDC136	7	128434749	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	5167547	128434749	30703914	67	34448											
UBN2	254048	broad.mit.edu;hgsc.bcm.edu	37	7	138958118	138958118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	138958118	A	G	138958118	3	3	586	1	0	0	0	0	1	0	0	0	16905	410	15	3	1829	3	UBN2	7	138958118	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	10523369	138958118	20180545	68	34449											
C8orf79	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	12879542	12879542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	12879542	G	C	12879542	3	2	586	1	0	0	0	0	1	0	0	0	2440	1000	35	4	1364	4	C8orf79	8	12879542	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		12879542	133484480	69	34450											
COPS5	10987	hgsc.bcm.edu;ucsc.edu	37	8	67968826	67968826	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	-	67968826	G	-	67968826	7	5	586	1	0	1	0	1	0	0	0	0	3738	1000	35	0	433	0	COPS5	8	67968826	Frame_Shift_Del	DEL	G	TCGA-CZ-5468-01A-01D-1501-10	55089284	67968826	78395196	70	34451											
ZHX1	11244	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	124265779	124265779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	124265779	A	T	124265779	3	4	586	1	0	0	0	0	1	0	0	0	17687	72	3	5	217	5	ZHX1	8	124265779	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	56296953	124265779	22098243	71	34452											
ZFAT	57623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	135622881	135622881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	135622881	C	G	135622881	3	3	586	1	0	0	0	0	1	0	0	0	17644	835	29	4	3317	4	ZFAT	8	135622881	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	11357102	135622881	10741141	72	34453											
EIF2C2	27161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	141559351	141559351	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	141559351	G	C	141559351	3	2	586	1	0	0	0	0	1	0	0	0	5008	1203	42	4	1161	4	EIF2C2	8	141559351	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	5936470	141559351	4804671	73	34454	449	2									
EIF2C2	27161	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	141559352	141559352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	141559352	C	A	141559352	3	1	586	1	0	0	0	0	1	0	0	0	5008	710	25	4	1162	4	EIF2C2	8	141559352	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	1	141559352	4804670	74	34455	449	2									
TYRP1	7306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	12708083	12708083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	12708083	A	G	12708083	3	3	586	1	0	0	0	0	1	0	0	0	16828	159	6	3	1370	3	TYRP1	9	12708083	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10		12708083	128505348	75	34456											
NOL6	65083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	33469655	33469655	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	33469655	T	A	33469655	3	1	586	1	0	0	0	0	1	0	0	0	10532	1580	55	5	2959	5	NOL6	9	33469655	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	20761572	33469655	107743776	76	34457											
C9orf41	138199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	77632363	77632363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	77632363	T	C	77632363	3	2	586	1	0	0	0	0	1	0	0	0	2484	1710	59	3	1025	3	C9orf41	9	77632363	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	44162708	77632363	63581068	77	34458											
DIP2C	22982	broad.mit.edu;ucsc.edu	37	10	409187	409187	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	409187	T	T	409187	3	4	586	1	0	0	0	0	1	0	0	0	4531	1203	42	4	2196	4	DIP2C	10	409187	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		409187	135125560	78	34459											
KIN	22944	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	7829795	7829795	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	7829795	C	T	7829795	2	4	586	1	0	0	0	0	0	0	0	1	8322	564	20	2		2	KIN	10	7829795	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	7420608	7829795	127704952	79	34460											
CCNY	219771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	35819094	35819094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	35819094	C	G	35819094	3	3	586	1	0	0	0	0	1	0	0	0	2938	711	25	4	528	4	CCNY	10	35819094	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	27989299	35819094	99715653	80	34461											
ZMYND17	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75185797	75185797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	75185797	C	T	75185797	3	4	586	1	0	0	0	0	1	0	0	0	17721	681	24	2	553	2	ZMYND17	10	75185797	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	39366703	75185797	60348950	81	34462											
OR51T1	401665	hgsc.bcm.edu;ucsc.edu	37	11	4903098	4903098	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	-	4903098	C	-	4903098	7	5	586	1	0	1	0	1	0	0	0	0	11113	913	32	0	52	0	OR51T1	11	4903098	Frame_Shift_Del	DEL	C	TCGA-CZ-5468-01A-01D-1501-10		4903098	130103418	82	34463											
MRGPRX3	117195	broad.mit.edu;hgsc.bcm.edu	37	11	18159570	18159570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	18159570	T	A	18159570	3	1	586	1	0	0	0	0	1	0	0	0	9775	1783	62	5	823	5	MRGPRX3	11	18159570	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	13256472	18159570	116846946	83	34464											
NAV2	89797	hgsc.bcm.edu;ucsc.edu	37	11	20104550	20104550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	20104550	C	G	20104550	3	3	586	1	0	0	0	0	1	0	0	0	10191	827	29	4	5543	4	NAV2	11	20104550	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	1944980	20104550	114901966	84	34465											
VPS37C	55048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	60899492	60899492	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	60899492	T	G	60899492	2	3	586	1	0	0	0	0	0	0	0	1	17219	1579	55	5		5	VPS37C	11	60899492	Silent	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	40794942	60899492	74107024	85	34466											
GAB2	9846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	77931466	77931466	+	Missense_Mutation	SNP	C	C	T	rs145573768		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	77931466	C	T	77931466	3	4	586	1	0	0	0	0	1	0	0	0	6156	536	19	1	252	1	GAB2	11	77931466	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	17031974	77931466	57075050	86	34467											
RNF26	79102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	119205888	119205888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	119205888	C	A	119205888	3	1	586	1	0	0	0	0	1	0	0	0	13499	507	18	4	58	4	RNF26	11	119205888	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	41274422	119205888	15800628	87	34468											
IGSF9B	22997	broad.mit.edu	37	11	133789678	133789678	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	133789678	T	T	133789678	2	4	586	1	0	0	0	0	0	0	0	1	7613	709	25	2		2	IGSF9B	11	133789678	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	14583790	133789678	1216838	88	34469											
AMN1	196394	hgsc.bcm.edu;ucsc.edu	37	12	31850290	31850290	+	RNA	SNP	A	A	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	31850290	A	G	31850290	1	3	586	0	1	0	0	0	0	0	0	0	581	116	4	3		3	AMN1	12	31850290	RNA	SNP	A	TCGA-CZ-5468-01A-01D-1501-10		31850290	102001605	89	34470											
KRT2	3849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53043743	53043743	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	53043743	G	A	53043743	2	1	586	1	0	0	0	0	0	0	0	1	8464	1280	45	2		2	KRT2	12	53043743	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	21193453	53043743	80808152	90	34471											
NXPH4	11247	broad.mit.edu	37	12	57618903	57618903	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	57618903	A	A	57618903	2	1	586	1	0	0	0	0	0	0	0	1	10800	1074	38	1		1	NXPH4	12	57618903	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	4575160	57618903	76232992	91	34472											
MARS	4141	broad.mit.edu;hgsc.bcm.edu	37	12	57881962	57881962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	57881962	T	A	57881962	3	1	586	1	0	0	0	0	1	0	0	0	9323	1435	50	5	91	5	MARS	12	57881962	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	263059	57881962	75969933	92	34473											
CLIP1	6249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	122831951	122831951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	122831951	T	C	122831951	3	2	586	1	0	0	0	0	1	0	0	0	3534	1821	63	3	2907	3	CLIP1	12	122831951	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	64949989	122831951	11019944	93	34474											
MED4	29079	broad.mit.edu	37	13	48669155	48669155	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	48669155	T	T	48669155	2	4	586	1	0	0	0	0	0	0	0	1	9457	581	21	2		2	MED4	13	48669155	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10		48669155	66500723	94	34475											
OLFM4	10562	hgsc.bcm.edu;ucsc.edu	37	13	53624868	53624868	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	53624868	C	T	53624868	2	4	586	1	0	0	0	0	0	0	0	1	10862	912	32	2		2	OLFM4	13	53624868	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	4955713	53624868	61545010	95	34476											
CTAGE5	4253	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	39763224	39763224	+	Silent	SNP	G	G	A	rs141828907	alternate_allele	TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	39763224	G	A	39763224	2	1	586	1	0	0	0	0	0	0	0	1	3996	1165	41	2		2	CTAGE5	14	39763224	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		39763224	67586316	96	34477											
SGPP1	81537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	64152863	64152863	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	64152863	A	C	64152863	3	2	586	1	0	0	0	0	1	0	0	0	14232	14	1	5	43	5	SGPP1	14	64152863	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	24389639	64152863	43196677	97	34478											
CASC5	57082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40949238	40949238	+	Splice_Site	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	40949238	A	T	40949238	5	4	586	1	0	0	0	0	0	0	1	0	2665	202	7	5	6651	5	CASC5	15	40949238	Splice_Site	SNP	A	TCGA-CZ-5468-01A-01D-1501-10		40949238	61582154	98	34479											
EIF3J	8669	broad.mit.edu	37	15	44829409	44829410	+	In_Frame_Ins	INS	-	ACT	ACT	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	ACT	44829410	ACT	ACT	44829409	7	5	586	1	0	1	1	0	0	0	0	0	5022	768	27	0	19	0	EIF3J	15	44829409	In_Frame_Ins	INS	-	TCGA-CZ-5468-01A-01D-1501-10	3880171	44829409	57701983	99	34480											
PYGO1	26108	broad.mit.edu;ucsc.edu	37	15	55841181	55841181	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	55841181	T	T	55841181	3	4	586	1	0	0	0	0	1	0	0	0	12876	855	30	2	1205	2	PYGO1	15	55841181	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	11011772	55841181	46690211	100	34481											
TLN2	83660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63092888	63092888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	63092888	G	A	63092888	3	1	586	1	0	0	0	0	1	0	0	0	15960	1377	48	2	6583	2	TLN2	15	63092888	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	7251707	63092888	39438504	101	34482											
ZNF609	23060	hgsc.bcm.edu	37	15	64968215	64968215	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	64968215	C	A	64968215	2	1	586	1	0	0	0	0	0	0	0	1	18047	581	21	4		4	ZNF609	15	64968215	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	1875327	64968215	37563177	102	34483											
MAN2C1	4123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75648339	75648339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	75648339	G	T	75648339	3	4	586	1	0	0	0	0	1	0	0	0	9225	1348	47	4	95	4	MAN2C1	15	75648339	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	10680124	75648339	26883053	103	34484											
RHBDF1	64285	broad.mit.edu;ucsc.edu	37	16	109255	109255	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	109255	T	T	109255	2	4	586	1	0	0	0	0	0	0	0	1	13332	697	25	2		2	RHBDF1	16	109255	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10		109255	90245498	104	34485											
CLCN7	1186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	1515299	1515299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	1515299	C	T	1515299	3	4	586	1	0	0	0	0	1	0	0	0	3470	797	28	2	2331	2	CLCN7	16	1515299	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	1406044	1515299	88839454	105	34486											
RAB26	25837	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	2200042	2200042	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	2200042	T	A	2200042	3	1	586	1	0	0	0	0	1	0	0	0	12926	1493	52	5	302	5	RAB26	16	2200042	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	684743	2200042	88154711	106	34487											
UBN1	29855	broad.mit.edu;ucsc.edu	37	16	4925034	4925034	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	4925034	G	G	4925034	3	3	586	1	0	0	0	0	1	0	0	0	16904	275	10	3	2677	3	UBN1	16	4925034	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	2724992	4925034	85429719	107	34488											
MYH11	4629	broad.mit.edu;ucsc.edu	37	16	15826565	15826565	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	15826565	G	G	15826565	3	3	586	1	0	0	0	0	1	0	0	0	10038	637	22	4	2506	4	MYH11	16	15826565	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	10901531	15826565	74528188	108	34489											
XYLT1	64131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	17202837	17202837	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	17202837	A	G	17202837	2	3	586	1	0	0	0	0	0	0	0	1	17475	214	8	3		3	XYLT1	16	17202837	Silent	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	1376272	17202837	73151916	109	34490											
TMC5	79838	broad.mit.edu;hgsc.bcm.edu	37	16	19460864	19460864	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	19460864	T	G	19460864	3	3	586	1	0	0	0	0	1	0	0	0	16000	1710	59	5	969	5	TMC5	16	19460864	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	2258027	19460864	70893889	110	34491											
KIAA0174	0	broad.mit.edu;hgsc.bcm.edu	37	16	71951006	71951006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	71951006	G	A	71951006	3	1	586	1	0	0	0	0	1	0	0	0	8165	1058	37	1	336	1	KIAA0174	16	71951006	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	52490142	71951006	18403747	111	34492											
CNTNAP4	85445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	76501348	76501348	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	76501348	T	A	76501348	3	1	586	1	0	0	0	0	1	0	0	0	3651	1580	55	5	1634	5	CNTNAP4	16	76501348	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	4550342	76501348	13853405	112	34493											
CDK12	51755	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37646824	37646824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	37646824	T	G	37646824	3	3	586	1	0	0	0	0	1	0	0	0	3130	1609	56	5	1956	5	CDK12	17	37646824	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10		37646824	43548386	113	34494											
CD300LG	146894	broad.mit.edu;ucsc.edu	37	17	41931340	41931340	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	41931340	G	G	41931340	3	3	586	1	0	0	0	0	1	0	0	0	3004	623	22	4	661	4	CD300LG	17	41931340	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	4284516	41931340	39263870	114	34495											
HLF	3131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	53345220	53345220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	53345220	C	T	53345220	3	4	586	1	0	0	0	0	1	0	0	0	7221	623	22	2	230	2	HLF	17	53345220	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	11413880	53345220	27849990	115	34496											
MPO	4353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	56349016	56349016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	56349016	C	T	56349016	3	4	586	1	0	0	0	0	1	0	0	0	9739	666	23	1	215	1	MPO	17	56349016	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	3003796	56349016	24846194	116	34497											
MARCH10	162333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	60814440	60814440	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	60814440	C	A	60814440	2	1	586	1	0	0	0	0	0	0	0	1	9306	726	26	4		4	MARCH10	17	60814440	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	4465424	60814440	20380770	117	34498	450	2									
MARCH10	162333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	60814441	60814441	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	60814441	C	G	60814441	3	3	586	1	0	0	0	0	1	0	0	0	9306	623	22	4	1662	4	MARCH10	17	60814441	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	1	60814441	20380769	118	34499	450	2									
SDK2	54549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	71420174	71420174	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	71420174	G	A	71420174	2	1	586	1	0	0	0	0	0	0	0	1	13982	1190	42	2		2	SDK2	17	71420174	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	10605733	71420174	9775036	119	34500											
RNF213	57674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78321744	78321744	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	78321744	A	G	78321744	2	3	586	1	0	0	0	0	0	0	0	1	13490	146	6	3		3	RNF213	17	78321744	Silent	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	6901570	78321744	2873466	120	34501											
MBD1	4152	hgsc.bcm.edu;ucsc.edu	37	18	47799227	47799227	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	47799227	T	A	47799227	2	1	586	1	0	0	0	0	0	0	0	1	9349	1567	55	5		5	MBD1	18	47799227	Silent	SNP	T	TCGA-CZ-5468-01A-01D-1501-10		47799227	30278021	121	34502											
CDH7	1005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	63530103	63530103	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	63530103	T	A	63530103	3	1	586	1	0	0	0	0	1	0	0	0	3117	1551	54	5	1852	5	CDH7	18	63530103	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	15730876	63530103	14547145	122	34503											
ZNF536	9745	broad.mit.edu	37	19	30936491	30936491	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	30936491	A	A	30936491	2	1	586	1	0	0	0	0	0	0	0	1	17986	1103	39	1		1	ZNF536	19	30936491	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		30936491	28192492	123	34504											
CCDC97	90324	broad.mit.edu	37	19	41826334	41826334	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	41826334	T	T	41826334	2	4	586	1	0	0	0	0	0	0	0	1	2877	506	18	2		2	CCDC97	19	41826334	Silent	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	10889843	41826334	17302649	124	34505											
PSG8	440533	broad.mit.edu;hgsc.bcm.edu	37	19	43262176	43262176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	43262176	G	T	43262176	3	4	586	1	0	0	0	0	1	0	0	0	12671	1252	44	4	626	4	PSG8	19	43262176	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	1435842	43262176	15866807	125	34506											
PVRL2	5819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45391608	45391608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	45391608	T	C	45391608	3	2	586	1	0	0	0	0	1	0	0	0	12853	1841	64	3	2025	3	PVRL2	19	45391608	Missense_Mutation	SNP	T	TCGA-CZ-5468-01A-01D-1501-10	2129432	45391608	13737375	126	34507											
RELB	5971	broad.mit.edu	37	19	45525450	45525450	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	45525450	G	G	45525450	3	3	586	1	0	0	0	0	1	0	0	0	13230	159	6	3	654	3	RELB	19	45525450	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	133842	45525450	13603533	127	34508											
SYMPK	8189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46319803	46319803	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	46319803	G	T	46319803	2	4	586	1	0	0	0	0	0	0	0	1	15451	932	33	4		4	SYMPK	19	46319803	Silent	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	794353	46319803	12809180	128	34509											
ZNF600	162966	broad.mit.edu;hgsc.bcm.edu	37	19	53269213	53269213	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	53269213	C	G	53269213	3	3	586	1	0	0	0	0	1	0	0	0	18042	913	32	4	376	4	ZNF600	19	53269213	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	6949410	53269213	5859770	129	34510			1	68		3	3	534	C		2.853887e-06
ZNF600	162966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53269727	53269727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	53269727	C	A	53269727	3	1	586	1	0	0	0	0	1	0	0	0	18042	913	32	4	890	4	ZNF600	19	53269727	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	514	53269727	5859256	130	34511			1	68		3	3	534	C		2.853887e-06
ZNF600	162966	broad.mit.edu;hgsc.bcm.edu	37	19	53269746	53269746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	53269746	C	A	53269746	3	1	586	1	0	0	0	0	1	0	0	0	18042	912	32	4	909	4	ZNF600	19	53269746	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	19	53269746	5859237	131	34512			1	68		3	3	534	C		2.853887e-06
UBOX5	22888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	3103217	3103217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	3103217	C	T	3103217	3	4	586	1	0	0	0	0	1	0	0	0	16906	507	18	2	1569	2	UBOX5	20	3103217	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10		3103217	59922303	132	34513											
TMX4	56255	hgsc.bcm.edu	37	20	7963240	7963240	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	7963240	A	T	7963240	3	4	586	1	0	0	0	0	1	0	0	0	16281	446	16	5	345	5	TMX4	20	7963240	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	4860023	7963240	55062280	133	34514											
ABHD12	26090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	25282909	25282909	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	C	25282909	A	C	25282909	3	2	586	1	0	0	0	0	1	0	0	0	76	72	3	5	163	5	ABHD12	20	25282909	Missense_Mutation	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	17319669	25282909	37742611	134	34515											
PHF20	51230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34459730	34459730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	34459730	C	A	34459730	3	1	586	1	0	0	0	0	1	0	0	0	11838	479	17	4	1291	4	PHF20	20	34459730	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10	9176821	34459730	28565790	135	34516											
LIPI	149998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	15579141	15579141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	T	15579141	C	T	15579141	3	4	586	1	0	0	0	0	1	0	0	0	8832	913	32	2	1381	2	LIPI	21	15579141	Missense_Mutation	SNP	C	TCGA-CZ-5468-01A-01D-1501-10		15579141	32550754	136	34517											
RWDD2B	10069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	30380357	30380357	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	G	30380357	A	G	30380357	2	3	586	1	0	0	0	0	0	0	0	1	13769	389	14	3		3	RWDD2B	21	30380357	Silent	SNP	A	TCGA-CZ-5468-01A-01D-1501-10	14801216	30380357	17749538	137	34518											
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	41741148	41741148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	41741148	G	A	41741148	3	1	586	1	0	0	0	0	1	0	0	0	4770	1145	40	1	5625	1	DSCAM	21	41741148	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	11360791	41741148	6388747	138	34519											
PPIL2	23759	broad.mit.edu;ucsc.edu	37	22	22024876	22024876	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	22024876	A	A	22024876	3	1	586	1	0	0	0	0	1	0	0	0	12337	1145	40	1	114	1	PPIL2	22	22024876	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		22024876	29279690	139	34520											
ENTHD1	150350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	40283658	40283658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	40283658	G	A	40283658	3	1	586	1	0	0	0	0	1	0	0	0	5139	1232	43	2	1752	2	ENTHD1	22	40283658	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10	18258782	40283658	11020908	140	34521											
MXRA5	25878	broad.mit.edu;hgsc.bcm.edu	37	X	3235733	3235733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5468-01A-01D-1501-10	TCGA-CZ-5468-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	50c6b5a2-cd0e-4adf-b85f-0f9c1847477f	8cfcc68d-a85b-4f22-af99-5cc68d65559f	A	3235733	G	A	3235733	3	1	586	1	0	0	0	0	1	0	0	0	10010	1232	43	2	2505	2	MXRA5	23	3235733	Missense_Mutation	SNP	G	TCGA-CZ-5468-01A-01D-1501-10		3235733	152034827	141	34522											
HSPG2	3339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22222714	22222714	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	22222714	C	T	22222714	2	4	587	1	0	0	0	0	0	0	0	1	7437	523	19	1		1	HSPG2	1	22222714	Silent	SNP	C	TCGA-CZ-5469-01A-01D-1501-10		22222714	227027907	1	34523											
TINAGL1	64129	broad.mit.edu;ucsc.edu	37	1	32050373	32050373	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	32050373	T	T	32050373	3	4	587	1	0	0	0	0	1	0	0	0	15934	1377	48	4	695	4	TINAGL1	1	32050373	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	9827659	32050373	217200248	2	34524											
THRAP3	9967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36755253	36755253	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	36755253	C	T	36755253	4	4	587	1	0	0	0	0	0	1	0	0	15886	644	23	1	1643	1	THRAP3	1	36755253	Nonsense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	4704880	36755253	212495368	3	34525											
AMPD2	271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110170727	110170727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	G	110170727	C	G	110170727	3	3	587	1	0	0	0	0	1	0	0	0	586	893	31	4	1344	4	AMPD2	1	110170727	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	73415474	110170727	139079894	4	34526											
DCST2	127579	broad.mit.edu;ucsc.edu	37	1	155002622	155002622	+	Missense_Mutation	SNP	G	A	A	rs138904334		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	155002622	A	A	155002622	3	1	587	1	0	0	0	0	1	0	0	0	4305	1145	40	1	1242	1	DCST2	1	155002622	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	44831895	155002622	94247999	5	34527											
GON4L	54856	broad.mit.edu;hgsc.bcm.edu	37	1	155764938	155764938	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	155764938	T	C	155764938	2	2	587	1	0	0	0	0	0	0	0	1	6579	1606	56	3		3	GON4L	1	155764938	Silent	SNP	T	TCGA-CZ-5469-01A-01D-1501-10	762316	155764938	93485683	6	34528	451	2									
GON4L	54856	broad.mit.edu;hgsc.bcm.edu	37	1	155764940	155764940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	155764940	C	T	155764940	3	4	587	1	0	0	0	0	1	0	0	0	6579	835	29	2	5275	2	GON4L	1	155764940	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	2	155764940	93485681	7	34529	451	2									
PSEN2	5664	broad.mit.edu;hgsc.bcm.edu	37	1	227073330	227073330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	227073330	G	T	227073330	3	4	587	1	0	0	0	0	1	0	0	0	12661	1145	40	4	458	4	PSEN2	1	227073330	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	71308390	227073330	22177291	8	34530											
CEP68	23177	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	65300044	65300044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	65300044	C	A	65300044	3	1	587	1	0	0	0	0	1	0	0	0	3260	594	21	4	1820	4	CEP68	2	65300044	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10		65300044	177899329	9	34531											
ANKRD23	200539	broad.mit.edu	37	2	97505515	97505515	+	Silent	SNP	T	C	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	97505515	C	C	97505515	2	2	587	1	0	0	0	0	0	0	0	1	652	1606	56	3		3	ANKRD23	2	97505515	Silent	SNP	T	TCGA-CZ-5469-01A-01D-1501-10	32205471	97505515	145693858	10	34532											
VHL	7428	hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	A	rs5030807	bycluster	TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PacBio	.	.	Illumina MiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	10183797	T	A	10183797	3	1	587	1	0	0	0	0	1	0	0	0	17174	1551	54	5	268	5	VHL	3	10183797	Missense_Mutation	SNP	T	TCGA-CZ-5469-01A-01D-1501-10		10183797	187838633	11	34533											
CDC25A	993	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	48215854	48215854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	48215854	G	T	48215854	3	4	587	1	0	0	0	0	1	0	0	0	3064	1174	41	4	752	4	CDC25A	3	48215854	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	38032057	48215854	149806576	12	34534											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu	37	3	52441261	52441261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	52441261	A	C	52441261	3	2	587	1	0	0	0	0	1	0	0	0	1311	14	1	5	1724	5	BAP1	3	52441261	Missense_Mutation	SNP	A	TCGA-CZ-5469-01A-01D-1501-10	4225407	52441261	145581169	13	34535											
PLXND1	23129	broad.mit.edu;ucsc.edu	37	3	129308262	129308262	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	129308262	T	T	129308262	3	4	587	1	0	0	0	0	1	0	0	0	12134	536	19	1	4497	1	PLXND1	3	129308262	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	76867001	129308262	68714168	14	34536											
DNAJC13	23317	hgsc.bcm.edu;ucsc.edu	37	3	132211264	132211275	+	In_Frame_Del	DEL	GATGATAGAGAA	GATGATAGAGAA	-	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	GATGATAGAGAA	GATGATAGAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	-	132211275	GATGATAGAGAA	-	132211264	7	5	587	1	0	1	0	1	0	0	0	0	4634	1277	45	0	3756	0	DNAJC13	3	132211264	In_Frame_Del	DEL	GATGATAGAGAA	TCGA-CZ-5469-01A-01D-1501-10	2903002	132211264	65811166	15	34537											
TXNDC6	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	138023808	138023808	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	138023808	G	C	138023808	3	2	587	1	0	0	0	0	1	0	0	0	16812	1261	44	4	288	4	TXNDC6	3	138023808	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	5812544	138023808	59998622	16	34538											
ZBBX	79740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	167000169	167000169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	167000169	G	A	167000169	3	1	587	1	0	0	0	0	1	0	0	0	17528	1294	45	2	420	2	ZBBX	3	167000169	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	28976361	167000169	31022261	17	34539											
MUC4	4585	broad.mit.edu	37	3	195515059	195515059	+	Missense_Mutation	SNP	G	A	A	rs71321846		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	195515059	A	A	195515059	3	1	587	1	0	0	0	0	1	0	0	0	9985	1377	48	2		2	MUC4	3	195515059	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	28514890	195515059	2507371	18	34540											
PCDHA11	56138	broad.mit.edu	37	5	140250599	140250599	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	140250599	T	T	140250599	2	4	587	1	0	0	0	0	0	0	0	1	11528	535	19	1		1	PCDHA11	5	140250599	Silent	SNP	C	TCGA-CZ-5469-01A-01D-1501-10		140250599	40664661	19	34541											
HLA-C	3107	broad.mit.edu	37	6	31237140	31237140	+	Silent	SNP	A	T	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	31237140	T	T	31237140	2	4	587	1	0	0	0	0	0	0	0	1	7204	175	7	5		5	HLA-C	6	31237140	Silent	SNP	A	TCGA-CZ-5469-01A-01D-1501-10		31237140	139877927	20	34542											
RIMS1	22999	broad.mit.edu	37	6	72892128	72892128	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	72892128	T	T	72892128	3	4	587	1	0	0	0	0	1	0	0	0	13380	1194	42	4	976	4	RIMS1	6	72892128	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	41654988	72892128	98222939	21	34543											
SNAP91	9892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	84302945	84302945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	84302945	G	A	84302945	3	1	587	1	0	0	0	0	1	0	0	0	14846	1087	38	1	1037	1	SNAP91	6	84302945	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	11410817	84302945	86812122	22	34544											
HIVEP2	3097	broad.mit.edu	37	6	143093080	143093080	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	143093080	T	T	143093080	2	4	587	1	0	0	0	0	0	0	0	1	7194	639	23	1		1	HIVEP2	6	143093080	Silent	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	58790135	143093080	28021987	23	34545											
SRPK2	6733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	104844182	104844182	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	104844182	G	C	104844182	3	2	587	1	0	0	0	0	1	0	0	0	15172	1348	47	4	2033	4	SRPK2	7	104844182	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10		104844182	54294481	24	34546											
WNT2	7472	broad.mit.edu;ucsc.edu	37	7	116918296	116918296	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	116918296	C	C	116918296	3	2	587	1	0	0	0	0	1	0	0	0	17398	1079	38	4	90	4	WNT2	7	116918296	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	12074114	116918296	42220367	25	34547											
AKR1B10	57016	broad.mit.edu	37	7	134212620	134212620	+	Translation_Start_Site	SNP	G	A	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	134212620	A	A	134212620	1	1	587	1	0	0	0	0	0	0	0	0	467	1160	40	1		1	AKR1B10	7	134212620	Translation_Start_Site	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	17294324	134212620	24926043	26	34548											
RRS1	23212	broad.mit.edu	37	8	67341565	67341565	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	67341565	C	C	67341565	3	2	587	1	0	0	0	0	1	0	0	0	13705	1174	41	4	201	4	RRS1	8	67341565	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10		67341565	79022457	27	34549											
STAU2	27067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	74440017	74440017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	74440017	C	A	74440017	3	1	587	1	0	0	0	0	1	0	0	0	15285	565	20	4	285	4	STAU2	8	74440017	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	7098452	74440017	71924005	28	34550											
ABCC2	1244	hgsc.bcm.edu;ucsc.edu	37	10	101567974	101568006	+	Frame_Shift_Del	DEL	CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG	CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG	-	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG	CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	-	101568006	CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG	-	101567974	7	5	587	1	0	1	0	1	0	0	0	0	53	668	24	0	1853	0	ABCC2	10	101567974	Frame_Shift_Del	DEL	CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG	TCGA-CZ-5469-01A-01D-1501-10		101567974	33966773	29	34551											
LRRC55	219527	broad.mit.edu	37	11	56958045	56958045	+	RNA	DEL	G	-	-	rs34507924		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	-	56958045	-	-	56958045	6	5	587	0	1	1	0	1	0	0	0	0	9018	1363	47	0		0	LRRC55	11	56958045	RNA	DEL	G	TCGA-CZ-5469-01A-01D-1501-10		56958045	78048471	30	34552											
NANOG	79923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7947298	7947298	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	7947298	C	T	7947298	2	4	587	1	0	0	0	0	0	0	0	1	10157	581	21	2		2	NANOG	12	7947298	Silent	SNP	C	TCGA-CZ-5469-01A-01D-1501-10		7947298	125904597	31	34553											
KRT73	319101	hgsc.bcm.edu;ucsc.edu	37	12	53011976	53011977	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	53011977	-	T	53011976	7	5	587	1	0	1	1	0	0	0	0	0	8493	912	32	0	1325	0	KRT73	12	53011976	Frame_Shift_Ins	INS	-	TCGA-CZ-5469-01A-01D-1501-10	45064678	53011976	80839919	32	34554											
EIF2B1	1967	broad.mit.edu;hgsc.bcm.edu	37	12	124116921	124116921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	124116921	G	A	124116921	3	1	587	1	0	0	0	0	1	0	0	0	5002	1145	40	1	863	1	EIF2B1	12	124116921	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	71104945	124116921	9734974	33	34555	452	2									
EIF2B1	1967	broad.mit.edu;hgsc.bcm.edu	37	12	124116922	124116922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	124116922	T	A	124116922	3	1	587	1	0	0	0	0	1	0	0	0	5002	1667	58	5	864	5	EIF2B1	12	124116922	Missense_Mutation	SNP	T	TCGA-CZ-5469-01A-01D-1501-10	1	124116922	9734973	34	34556	452	2									
OCA2	4948	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	28267703	28267703	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	G	28267703	T	G	28267703	3	3	587	1	0	0	0	0	1	0	0	0	10822	1406	49	5	2002	5	OCA2	15	28267703	Missense_Mutation	SNP	T	TCGA-CZ-5469-01A-01D-1501-10		28267703	74263689	35	34557											
AKAP13	11214	broad.mit.edu;ucsc.edu	37	15	86118435	86118435	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	86118435	T	T	86118435	3	4	587	1	0	0	0	0	1	0	0	0	449	710	25	2	754	2	AKAP13	15	86118435	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	57850732	86118435	16412957	36	34558											
FLYWCH1	84256	broad.mit.edu;hgsc.bcm.edu	37	16	2983245	2983245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	2983245	G	A	2983245	3	1	587	1	0	0	0	0	1	0	0	0	5954	1319	46	2	918	2	FLYWCH1	16	2983245	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10		2983245	87371508	37	34559											
OR2C1	4993	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	3406081	3406081	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	3406081	G	A	3406081	2	1	587	1	0	0	0	0	0	0	0	1	10999	1310	46	2		2	OR2C1	16	3406081	Silent	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	422836	3406081	86948672	38	34560											
SCNN1B	6338	broad.mit.edu	37	16	23360188	23360188	+	Missense_Mutation	SNP	A	G	G	rs150466803		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	G	23360188	G	G	23360188	3	3	587	1	0	0	0	0	1	0	0	0	13941	217	8	3	270	3	SCNN1B	16	23360188	Missense_Mutation	SNP	A	TCGA-CZ-5469-01A-01D-1501-10	19954107	23360188	66994565	39	34561											
KIAA0513	9764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	85120766	85120766	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	85120766	G	C	85120766	3	2	587	1	0	0	0	0	1	0	0	0	8188	1174	41	4	1222	4	KIAA0513	16	85120766	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10	61760578	85120766	5233987	40	34562											
SEZ6	124925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27286442	27286442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	27286442	G	A	27286442	3	1	587	1	0	0	0	0	1	0	0	0	14155	1232	43	2	1213	2	SEZ6	17	27286442	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10		27286442	53908768	41	34563											
CASKIN2	57513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73500959	73500959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	73500959	C	T	73500959	3	4	587	1	0	0	0	0	1	0	0	0	2669	893	31	1	2522	1	CASKIN2	17	73500959	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	46214517	73500959	7694251	42	34564											
POLI	11201	broad.mit.edu;ucsc.edu	37	18	51809261	51809261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	51809261	A	A	51809261	3	1	587	1	0	0	0	0	1	0	0	0	12210	1145	40	1	873	1	POLI	18	51809261	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10		51809261	26267987	43	34565											
OR10H5	284433	broad.mit.edu	37	19	15905371	15905371	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	15905371	A	A	15905371	3	1	587	1	0	0	0	0	1	0	0	0	10916	477	17	4	515	4	OR10H5	19	15905371	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10		15905371	43223612	44	34566											
MYH14	79784	broad.mit.edu	37	19	50733855	50733855	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	-	50733855	-	-	50733855	7	5	587	1	0	1	0	1	0	0	0	0	10040	1335	47	0	978	0	MYH14	19	50733855	Frame_Shift_Del	DEL	G	TCGA-CZ-5469-01A-01D-1501-10	34828484	50733855	8395128	45	34567											
ZNF649	65251	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52394722	52394722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	52394722	C	T	52394722	3	4	587	1	0	0	0	0	1	0	0	0	18076	835	29	2	854	2	ZNF649	19	52394722	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	1660867	52394722	6734261	46	34568											
PREX1	57580	broad.mit.edu;hgsc.bcm.edu	37	20	47244458	47244458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	47244458	G	A	47244458	3	1	587	1	0	0	0	0	1	0	0	0	12486	1144	40	1	181	1	PREX1	20	47244458	Missense_Mutation	SNP	G	TCGA-CZ-5469-01A-01D-1501-10		47244458	15781062	47	34569											
KRTAP15-1	254950	broad.mit.edu;hgsc.bcm.edu	37	21	31812784	31812784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	31812784	C	A	31812784	3	1	587	1	0	0	0	0	1	0	0	0	8533	913	32	4	141	4	KRTAP15-1	21	31812784	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10		31812784	16317111	48	34570											
MED15	51586	broad.mit.edu;ucsc.edu	37	22	20929497	20929497	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	20929497	C	C	20929497	3	2	587	1	0	0	0	0	1	0	0	0	9440	1821	63	3	1284	3	MED15	22	20929497	Missense_Mutation	SNP	T	TCGA-CZ-5469-01A-01D-1501-10		20929497	30375069	49	34571											
CENPM	79019	broad.mit.edu	37	22	42335169	42335169	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	A	42335169	A	A	42335169	3	1	587	1	0	0	0	0	1	0	0	0	3239	768	27	4	112	4	CENPM	22	42335169	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	21405672	42335169	8969397	50	34572											
MED12	9968	broad.mit.edu	37	X	70360569	70360569	+	Silent	SNP	T	C	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	70360569	C	C	70360569	2	2	587	1	0	0	0	0	0	0	0	1	9435	1712	60	3		3	MED12	23	70360569	Silent	SNP	T	TCGA-CZ-5469-01A-01D-1501-10		70360569	84909991	51	34573											
NHSL2	340527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	71358471	71358471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	T	71358471	C	T	71358471	3	4	587	1	0	0	0	0	1	0	0	0	10419	710	25	2	1095	2	NHSL2	23	71358471	Missense_Mutation	SNP	C	TCGA-CZ-5469-01A-01D-1501-10	997902	71358471	83912089	52	34574											
KIAA2022	340533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	73963362	73963362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5469-01A-01D-1501-10	TCGA-CZ-5469-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	3df654a0-48b0-45ff-bfe1-b5f78f63b30d	774be195-fc56-42e0-ad6f-260df24d5f23	C	73963362	T	C	73963362	3	2	587	1	0	0	0	0	1	0	0	0	8276	1638	57	3	3528	3	KIAA2022	23	73963362	Missense_Mutation	SNP	T	TCGA-CZ-5469-01A-01D-1501-10	2604891	73963362	81307198	53	34575											
MEGF6	1953	broad.mit.edu	37	1	3519151	3519152	+	Frame_Shift_Del	DEL	CA	-	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	3519152	-	-	3519151	7	5	588	1	0	1	0	1	0	0	0	0	9469	710	25	0	4624	0	MEGF6	1	3519151	Frame_Shift_Del	DEL	CA	TCGA-CZ-5470-01A-01D-1501-10		3519151	245731470	1	34576											
DAB1	1600	broad.mit.edu	37	1	57481090	57481090	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	57481090	T	T	57481090	3	4	588	1	0	0	0	0	1	0	0	0	4219	623	22	2	769	2	DAB1	1	57481090	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	53961939	57481090	191769531	2	34577											
JUN	3725	broad.mit.edu;hgsc.bcm.edu	37	1	59248705	59248705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	59248705	G	T	59248705	3	4	588	1	0	0	0	0	1	0	0	0	7976	1203	42	4	961	4	JUN	1	59248705	Missense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	1767615	59248705	190001916	3	34578											
MTMR11	10903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	149908474	149908474	+	Splice_Site	SNP	C	C	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	149908474	C	T	149908474	5	4	588	1	0	0	0	0	0	0	1	0	9947	521	18	2	2169	2	MTMR11	1	149908474	Splice_Site	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	90659769	149908474	99342147	4	34579											
USF1	7391	hgsc.bcm.edu;ucsc.edu	37	1	161011524	161011524	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	161011524	C	-	161011524	7	5	588	1	0	1	0	1	0	0	0	0	17044	507	18	0	567	0	USF1	1	161011524	Frame_Shift_Del	DEL	C	TCGA-CZ-5470-01A-01D-1501-10	11103050	161011524	88239097	5	34580											
KCNT2	343450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	196254849	196254849	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	196254849	G	A	196254849	4	1	588	1	0	0	0	0	0	1	0	0	8099	1066	37	1	796	1	KCNT2	1	196254849	Nonsense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	35243325	196254849	52995772	6	34581											
KIF14	9928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	200555334	200555334	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	C	200555334	G	C	200555334	3	2	588	1	0	0	0	0	1	0	0	0	8283	1116	39	4	1858	4	KIF14	1	200555334	Missense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	4300485	200555334	48695287	7	34582											
RNF144A	9781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	7164573	7164573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	C	7164573	G	C	7164573	3	2	588	1	0	0	0	0	1	0	0	0	13458	942	33	4	601	4	RNF144A	2	7164573	Missense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10		7164573	236034800	8	34583											
KIF1A	547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	241686667	241686667	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	241686667	G	A	241686667	4	1	588	1	0	0	0	0	0	1	0	0	8290	1357	47	2	2410	2	KIF1A	2	241686667	Nonsense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	234522094	241686667	1512706	9	34584											
CHL1	10752	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	367660	367660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	367660	T	A	367660	3	1	588	1	0	0	0	0	1	0	0	0	3351	1435	50	5	116	5	CHL1	3	367660	Missense_Mutation	SNP	T	TCGA-CZ-5470-01A-01D-1501-10		367660	197654770	10	34585											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188200	10188200	+	Missense_Mutation	SNP	C	C	A	rs5030811	bycluster;alternate_allele	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	10188200	C	A	10188200	3	1	588	1	0	0	0	0	1	0	0	0	17174	826	29	4	349	4	VHL	3	10188200	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	9820540	10188200	187834230	11	34586											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47163209	47163209	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	47163209	T	A	47163209	4	1	588	1	0	0	0	0	0	1	0	0	14144	1617	56	5	4853	5	SETD2	3	47163209	Nonsense_Mutation	SNP	T	TCGA-CZ-5470-01A-01D-1501-10	36975009	47163209	150859221	12	34587											
BAP1	8314	hgsc.bcm.edu;ucsc.edu	37	3	52443623	52443647	+	In_Frame_Del	DEL	ACCTGCGATGAGGAAAGGAAAGCAG	ACCTGCGATGAGGAAAGGAAAGCAG	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	ACCTGCGATGAGGAAAGGAAAGCAG	ACCTGCGATGAGGAAAGGAAAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	52443647	ACCTGCGATGAGGAAAGGAAAGCAG	-	52443623	7	5	588	1	0	1	0	1	0	0	0	0	1311	173	6	0	2180	0	BAP1	3	52443623	In_Frame_Del	DEL	ACCTGCGATGAGGAAAGGAAAGCAG	TCGA-CZ-5470-01A-01D-1501-10	5280414	52443623	145578807	13	34588											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52610659	52610659	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	52610659	T	-	52610659	7	5	588	1	0	1	0	1	0	0	0	0	11498	1464	51	0	1347	0	PBRM1	3	52610659	Frame_Shift_Del	DEL	T	TCGA-CZ-5470-01A-01D-1501-10	167036	52610659	145411771	14	34589											
PROS1	5627	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	93598122	93598122	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	93598122	A	-	93598122	7	5	588	1	0	1	0	1	0	0	0	0	12568	159	6	0	513	0	PROS1	3	93598122	Frame_Shift_Del	DEL	A	TCGA-CZ-5470-01A-01D-1501-10	40987463	93598122	104424308	15	34590											
NFKBIZ	64332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	101573504	101573504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	101573504	G	T	101573504	3	4	588	1	0	0	0	0	1	0	0	0	10390	1174	41	4	1442	4	NFKBIZ	3	101573504	Missense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	7975382	101573504	96448926	16	34591											
ALCAM	214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	105266275	105266275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	105266275	G	A	105266275	3	1	588	1	0	0	0	0	1	0	0	0	487	1349	47	2	1324	2	ALCAM	3	105266275	Missense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	3692771	105266275	92756155	17	34592											
FEM1C	56929	broad.mit.edu;ucsc.edu	37	5	114860153	114860153	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	C	114860153	C	C	114860153	3	2	588	1	0	0	0	0	1	0	0	0	5818	1435	50	3	151	3	FEM1C	5	114860153	Missense_Mutation	SNP	T	TCGA-CZ-5470-01A-01D-1501-10		114860153	66055107	18	34593											
ANKHD1	54882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	139905891	139905891	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	139905891	C	T	139905891	2	4	588	1	0	0	0	0	0	0	0	1	628	718	25	2		2	ANKHD1	5	139905891	Silent	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	25045738	139905891	41009369	19	34594											
PCDH12	51294	broad.mit.edu	37	5	141337114	141337114	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	141337114	A	A	141337114	3	1	588	1	0	0	0	0	1	0	0	0	11517	624	22	4	3267	4	PCDH12	5	141337114	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	1431223	141337114	39578146	20	34595											
LCP2	3937	broad.mit.edu;hgsc.bcm.edu	37	5	169694070	169694070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	169694070	G	A	169694070	3	1	588	1	0	0	0	0	1	0	0	0	8699	1232	43	2	1022	2	LCP2	5	169694070	Missense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	28356956	169694070	11221190	21	34596											
HIVEP1	3096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	12125187	12125187	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	12125187	C	A	12125187	4	1	588	1	0	0	0	0	0	1	0	0	7193	838	29	4	5169	4	HIVEP1	6	12125187	Nonsense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10		12125187	158989880	22	34597											
FTSJD2	23070	broad.mit.edu;ucsc.edu	37	6	37447813	37447813	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	G	37447813	G	G	37447813	3	3	588	1	0	0	0	0	1	0	0	0	6098	912	32	4	2490	4	FTSJD2	6	37447813	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	25322626	37447813	133667254	23	34598											
FZD9	8326	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	72849270	72849270	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	72849270	G	A	72849270	2	1	588	1	0	0	0	0	0	0	0	1	6144	1103	39	1		1	FZD9	7	72849270	Silent	SNP	G	TCGA-CZ-5470-01A-01D-1501-10		72849270	86289393	24	34599											
PCLO	27445	hgsc.bcm.edu	37	7	82784434	82784463	+	In_Frame_Del	DEL	TTTGTTGAGCCAGGCTGTTGAGATGGGGGC	TTTGTTGAGCCAGGCTGTTGAGATGGGGGC	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	TTTGTTGAGCCAGGCTGTTGAGATGGGGGC	TTTGTTGAGCCAGGCTGTTGAGATGGGGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	82784463	TTTGTTGAGCCAGGCTGTTGAGATGGGGGC	-	82784434	7	5	588	1	0	1	0	1	0	0	0	0	11590	1841	64	0	14018	0	PCLO	7	82784434	In_Frame_Del	DEL	TTTGTTGAGCCAGGCTGTTGAGATGGGGGC	TCGA-CZ-5470-01A-01D-1501-10	9935164	82784434	76354229	25	34600											
TRRAP	8295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	98507681	98507681	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	C	98507681	T	C	98507681	2	2	588	1	0	0	0	0	0	0	0	1	16613	1828	64	3		3	TRRAP	7	98507681	Silent	SNP	T	TCGA-CZ-5470-01A-01D-1501-10	15723247	98507681	60630982	26	34601											
ZNF655	79027	broad.mit.edu;hgsc.bcm.edu	37	7	99169358	99169358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	99169358	C	A	99169358	3	1	588	1	0	0	0	0	1	0	0	0	18080	912	32	4	612	4	ZNF655	7	99169358	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	661677	99169358	59969305	27	34602											
OR6V1	346517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	142749937	142749937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	142749937	G	A	142749937	3	1	588	1	0	0	0	0	1	0	0	0	11218	1319	46	2	502	2	OR6V1	7	142749937	Missense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	43580579	142749937	16388726	28	34603											
CLCN1	1180	hgsc.bcm.edu;ucsc.edu	37	7	143020428	143020428	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	143020428	C	A	143020428	2	1	588	1	0	0	0	0	0	0	0	1	3464	903	32	4		4	CLCN1	7	143020428	Silent	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	270491	143020428	16118235	29	34604											
MSR1	4481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	16035394	16035394	+	Splice_Site	SNP	C	C	T	rs150131889	byfrequency;alternate_allele	TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	16035394	C	T	16035394	5	4	588	1	0	0	0	0	0	0	1	0	9893	579	20	2	1335	2	MSR1	8	16035394	Splice_Site	SNP	C	TCGA-CZ-5470-01A-01D-1501-10		16035394	130328628	30	34605											
LRP12	29967	hgsc.bcm.edu;ucsc.edu	37	8	105503470	105503470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	105503470	C	T	105503470	3	4	588	1	0	0	0	0	1	0	0	0	8961	507	18	2	572	2	LRP12	8	105503470	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	89468076	105503470	40860552	31	34606											
RGP1	9827	broad.mit.edu;hgsc.bcm.edu	37	9	35751400	35751400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	35751400	C	T	35751400	3	4	588	1	0	0	0	0	1	0	0	0	13297	652	23	1	771	1	RGP1	9	35751400	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10		35751400	105462031	32	34607											
LOC286238	286238	broad.mit.edu;ucsc.edu	37	9	91262512	91262512	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	C	91262512	C	C	91262512	3	2	588	1	0	0	0	0	1	0	0	0	8881	1000	35	4	211	4	LOC286238	9	91262512	Missense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	55511112	91262512	49950919	33	34608											
SLC2A8	29988	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130169437	130169437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	130169437	G	A	130169437	3	1	588	1	0	0	0	0	1	0	0	0	14564	1319	46	2	1381	2	SLC2A8	9	130169437	Missense_Mutation	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	38906925	130169437	11043994	34	34609											
ITGB1	3688	broad.mit.edu;hgsc.bcm.edu	37	10	33199315	33199315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	C	33199315	T	C	33199315	3	2	588	1	0	0	0	0	1	0	0	0	7897	1406	49	3	646	3	ITGB1	10	33199315	Missense_Mutation	SNP	T	TCGA-CZ-5470-01A-01D-1501-10		33199315	102335432	35	34610											
IFT46	56912	hgsc.bcm.edu;ucsc.edu	37	11	118427645	118427647	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	118427647	TCA	-	118427645	7	5	588	1	0	1	0	1	0	0	0	0	7567	1783	62	0	789	0	IFT46	11	118427645	In_Frame_Del	DEL	TCA	TCGA-CZ-5470-01A-01D-1501-10		118427645	16578871	36	34611											
WNK1	65125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	977348	977348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	G	977348	A	G	977348	3	3	588	1	0	0	0	0	1	0	0	0	17389	217	8	3	2749	3	WNK1	12	977348	Missense_Mutation	SNP	A	TCGA-CZ-5470-01A-01D-1501-10		977348	132874547	37	34612											
ZNF385A	25946	hgsc.bcm.edu;ucsc.edu	37	12	54764794	54764794	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	54764794	C	-	54764794	7	5	588	1	0	1	0	1	0	0	0	0	17888	864	30	0	421	0	ZNF385A	12	54764794	Frame_Shift_Del	DEL	C	TCGA-CZ-5470-01A-01D-1501-10	53787446	54764794	79087101	38	34613											
GALNT9	50614	broad.mit.edu	37	12	132682466	132682466	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	132682466	-	-	132682466	7	5	588	1	0	1	0	1	0	0	0	0	6227	726	26	0	283	0	GALNT9	12	132682466	Frame_Shift_Del	DEL	C	TCGA-CZ-5470-01A-01D-1501-10	77917672	132682466	1169429	39	34614											
PLEKHO2	80301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	65157277	65157277	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	65157277	G	A	65157277	2	1	588	1	0	0	0	0	0	0	0	1	12092	1223	43	2		2	PLEKHO2	15	65157277	Silent	SNP	G	TCGA-CZ-5470-01A-01D-1501-10		65157277	37374115	40	34615											
ARIH1	25820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	72847625	72847625	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	G	72847625	T	G	72847625	3	3	588	1	0	0	0	0	1	0	0	0	923	1609	56	5	616	5	ARIH1	15	72847625	Missense_Mutation	SNP	T	TCGA-CZ-5470-01A-01D-1501-10	7690348	72847625	29683767	41	34616											
DAPK3	1613	hgsc.bcm.edu;ucsc.edu	37	19	3964350	3964350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	3964350	C	T	3964350	3	4	588	1	0	0	0	0	1	0	0	0	4239	855	30	2	943	2	DAPK3	19	3964350	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10		3964350	55164633	42	34617											
GZF1	64412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	23350858	23350858	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	G	23350858	T	G	23350858	3	3	588	1	0	0	0	0	1	0	0	0	6921	1580	55	5	1934	5	GZF1	20	23350858	Missense_Mutation	SNP	T	TCGA-CZ-5470-01A-01D-1501-10		23350858	39674662	43	34618											
CHMP4B	128866	hgsc.bcm.edu;ucsc.edu	37	20	32436409	32436409	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	-	32436409	G	-	32436409	7	5	588	1	0	1	0	1	0	0	0	0	3359	1348	47	0	333	0	CHMP4B	20	32436409	Frame_Shift_Del	DEL	G	TCGA-CZ-5470-01A-01D-1501-10	9085551	32436409	30589111	44	34619											
CACNA1I	8911	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	40062013	40062013	+	Splice_Site	SNP	T	T	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	40062013	T	A	40062013	5	1	588	1	0	0	0	0	0	0	1	0	2548	1710	59	5	4196	5	CACNA1I	22	40062013	Splice_Site	SNP	T	TCGA-CZ-5470-01A-01D-1501-10		40062013	11242553	45	34620											
NDP	4693	broad.mit.edu;ucsc.edu	37	X	43809267	43809267	+	Silent	SNP	C	A	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	43809267	A	A	43809267	2	1	588	1	0	0	0	0	0	0	0	1	10257	697	25	4		4	NDP	23	43809267	Silent	SNP	C	TCGA-CZ-5470-01A-01D-1501-10		43809267	111461293	46	34621											
CCDC120	90060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	48923285	48923285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	48923285	C	T	48923285	3	4	588	1	0	0	0	0	1	0	0	0	2758	536	19	1	891	1	CCDC120	23	48923285	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	5114018	48923285	106347275	47	34622											
TRO	7216	hgsc.bcm.edu	37	X	54949288	54949289	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	C	54949289	-	C	54949288	7	5	588	1	0	1	1	0	0	0	0	0	16586	43	2	0	329	0	TRO	23	54949288	Frame_Shift_Ins	INS	-	TCGA-CZ-5470-01A-01D-1501-10	6026003	54949288	100321272	48	34623											
TAF1	6872	broad.mit.edu	37	X	70607246	70607246	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	T	70607246	T	T	70607246	3	4	588	1	0	0	0	0	1	0	0	0	15525	855	30	2	2480	2	TAF1	23	70607246	Missense_Mutation	SNP	C	TCGA-CZ-5470-01A-01D-1501-10	15657958	70607246	84663314	49	34624											
MAGEC1	9947	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	140993373	140993373	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5470-01A-01D-1501-10	TCGA-CZ-5470-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c9a7ca9e-c36e-46c1-926f-4a57a0584cb0	d0636c20-cd70-4fdf-b273-4756d9effbf1	A	140993373	G	A	140993373	2	1	588	1	0	0	0	0	0	0	0	1	9187	991	35	2		2	MAGEC1	23	140993373	Silent	SNP	G	TCGA-CZ-5470-01A-01D-1501-10	70386127	140993373	14277187	50	34625											
EXOSC10	5394	hgsc.bcm.edu;ucsc.edu	37	1	11147603	11147603	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	-	11147603	T	-	11147603	7	5	589	1	0	1	0	1	0	0	0	0	5316	1493	52	0	1734	0	EXOSC10	1	11147603	Frame_Shift_Del	DEL	T	TCGA-CZ-5982-01A-11D-1669-08		11147603	238103018	1	34626											
HSPG2	3339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22178652	22178652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	22178652	C	T	22178652	3	4	589	1	0	0	0	0	1	0	0	0	7437	536	19	1	6556	1	HSPG2	1	22178652	Missense_Mutation	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	11031049	22178652	227071969	2	34627											
RNF115	27246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	145684607	145684607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	G	145684607	C	G	145684607	3	3	589	1	0	0	0	0	1	0	0	0	13443	478	17	4	622	4	RNF115	1	145684607	Missense_Mutation	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	123505955	145684607	103566014	3	34628											
C1orf110	339512	broad.mit.edu;ucsc.edu	37	1	162824983	162824983	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	162824983	T	T	162824983	3	4	589	1	0	0	0	0	1	0	0	0	1985	913	32	2	431	2	C1orf110	1	162824983	Missense_Mutation	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	17140376	162824983	86425638	4	34629											
SMG7	9887	broad.mit.edu;ucsc.edu	37	1	183515189	183515189	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	183515189	T	T	183515189	3	4	589	1	0	0	0	0	1	0	0	0	14811	391	14	5	2525	5	SMG7	1	183515189	Missense_Mutation	SNP	A	TCGA-CZ-5982-01A-11D-1669-08	20690206	183515189	65735432	5	34630											
UGT1A4	54657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234627516	234627516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	C	234627516	T	C	234627516	3	2	589	1	0	0	0	0	1	0	0	0	16959	1580	55	3	52	3	UGT1A4	2	234627516	Missense_Mutation	SNP	T	TCGA-CZ-5982-01A-11D-1669-08		234627516	8571857	6	34631											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10191499	10191499	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	-	10191499	-	-	10191499	7	5	589	1	0	1	0	1	0	0	0	0	17174	991	35	0	502	0	VHL	3	10191499	Frame_Shift_Del	DEL	G	TCGA-CZ-5982-01A-11D-1669-08		10191499	187830931	7	34632											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52598158	52598158	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	52598158	G	T	52598158	4	4	589	1	0	0	0	0	0	1	0	0	11498	1372	48	4	1149	4	PBRM1	3	52598158	Nonsense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08	42406659	52598158	145424272	8	34633											
APPL1	26060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	57283562	57283562	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	57283562	T	A	57283562	2	1	589	1	0	0	0	0	0	0	0	1	817	1596	56	5		5	APPL1	3	57283562	Silent	SNP	T	TCGA-CZ-5982-01A-11D-1669-08	4685404	57283562	140738868	9	34634											
TOPBP1	11073	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	133342007	133342007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	133342007	C	T	133342007	3	4	589	1	0	0	0	0	1	0	0	0	16381	478	17	2	1502	2	TOPBP1	3	133342007	Missense_Mutation	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	76058445	133342007	64680423	10	34635											
DLG1	1739	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	196842954	196842954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	G	196842954	C	G	196842954	3	3	589	1	0	0	0	0	1	0	0	0	4556	637	22	4	1484	4	DLG1	3	196842954	Missense_Mutation	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	63500947	196842954	1179476	11	34636											
ARSK	153642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	94918640	94918640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	94918640	C	A	94918640	3	1	589	1	0	0	0	0	1	0	0	0	996	478	17	4	451	4	ARSK	5	94918640	Missense_Mutation	SNP	C	TCGA-CZ-5982-01A-11D-1669-08		94918640	85996620	12	34637											
UBR2	23304	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	42604791	42604791	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	42604791	C	T	42604791	2	4	589	1	0	0	0	0	0	0	0	1	16914	564	20	2		2	UBR2	6	42604791	Silent	SNP	C	TCGA-CZ-5982-01A-11D-1669-08		42604791	128510276	13	34638											
TCP10	6953	hgsc.bcm.edu	37	6	167789488	167789488	+	Silent	SNP	C	C	T	rs9355636		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	167789488	C	T	167789488	2	4	589	1	0	0	0	0	0	0	0	1	15722	755	27	1		1	TCP10	6	167789488	Silent	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	125184697	167789488	3325579	14	34639											
MPP6	51678	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	24720095	24720095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	24720095	C	T	24720095	3	4	589	1	0	0	0	0	1	0	0	0	9745	710	25	2	1440	2	MPP6	7	24720095	Missense_Mutation	SNP	C	TCGA-CZ-5982-01A-11D-1669-08		24720095	134418568	15	34640											
CDK13	8621	broad.mit.edu;hgsc.bcm.edu	37	7	39991366	39991366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	C	39991366	T	C	39991366	3	2	589	1	0	0	0	0	1	0	0	0	3131	1522	53	3	1128	3	CDK13	7	39991366	Missense_Mutation	SNP	T	TCGA-CZ-5982-01A-11D-1669-08	15271271	39991366	119147297	16	34641											
FBXL13	222235	hgsc.bcm.edu;ucsc.edu	37	7	102665597	102665597	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	-	102665597	A	-	102665597	7	5	589	1	0	1	0	1	0	0	0	0	5716	243	9	0	1859	0	FBXL13	7	102665597	Frame_Shift_Del	DEL	A	TCGA-CZ-5982-01A-11D-1669-08	62674231	102665597	56473066	17	34642											
EBF2	64641	broad.mit.edu	37	8	25899690	25899690	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	G	25899690	G	G	25899690	3	3	589	1	0	0	0	0	1	0	0	0	4883	275	10	3	1578	3	EBF2	8	25899690	Missense_Mutation	SNP	A	TCGA-CZ-5982-01A-11D-1669-08		25899690	120464332	18	34643											
ZNF395	55893	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	28206286	28206286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	G	28206286	A	G	28206286	3	3	589	1	0	0	0	0	1	0	0	0	17893	159	6	3	53	3	ZNF395	8	28206286	Missense_Mutation	SNP	A	TCGA-CZ-5982-01A-11D-1669-08	2306596	28206286	118157736	19	34644											
HMBOX1	79618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	28906483	28906483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	28906483	T	A	28906483	3	1	589	1	0	0	0	0	1	0	0	0	7225	1580	55	5	1073	5	HMBOX1	8	28906483	Missense_Mutation	SNP	T	TCGA-CZ-5982-01A-11D-1669-08	700197	28906483	117457539	20	34645											
GPR124	25960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	37696506	37696506	+	Silent	SNP	C	C	T	rs147055217	byfrequency	TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	37696506	C	T	37696506	2	4	589	1	0	0	0	0	0	0	0	1	6645	755	27	1		1	GPR124	8	37696506	Silent	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	8790023	37696506	108667516	21	34646											
KIAA0146	23514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	48353095	48353095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	48353095	T	A	48353095	3	1	589	1	0	0	0	0	1	0	0	0	8164	1783	62	5	1118	5	KIAA0146	8	48353095	Missense_Mutation	SNP	T	TCGA-CZ-5982-01A-11D-1669-08	10656589	48353095	98010927	22	34647											
C9orf125	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	104238212	104238212	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	C	104238212	A	C	104238212	3	2	589	1	0	0	0	0	1	0	0	0	2456	333	12	5	52	5	C9orf125	9	104238212	Missense_Mutation	SNP	A	TCGA-CZ-5982-01A-11D-1669-08		104238212	36975219	23	34648											
PRKG1	5592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	53921672	53921672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	53921672	G	A	53921672	3	1	589	1	0	0	0	0	1	0	0	0	12532	1232	43	2	1329	2	PRKG1	10	53921672	Missense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08		53921672	81613075	24	34649											
SIRT1	23411	hgsc.bcm.edu;ucsc.edu	37	10	69672600	69672600	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	-	69672600	A	-	69672600	7	5	589	1	0	1	0	1	0	0	0	0	14350	246	9	0	1757	0	SIRT1	10	69672600	Frame_Shift_Del	DEL	A	TCGA-CZ-5982-01A-11D-1669-08	15750928	69672600	65862147	25	34650											
SORCS3	22986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	107015522	107015522	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	107015522	G	T	107015522	2	4	589	1	0	0	0	0	0	0	0	1	14945	1219	43	4		4	SORCS3	10	107015522	Silent	SNP	G	TCGA-CZ-5982-01A-11D-1669-08	37342922	107015522	28519225	26	34651											
NDUFS3	4722	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	47602127	47602127	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	47602127	G	T	47602127	4	4	589	1	0	0	0	0	0	1	0	0	10300	1349	47	4	194	4	NDUFS3	11	47602127	Nonsense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08		47602127	87404389	27	34652											
EEF1G	1937	broad.mit.edu	37	11	62339115	62339115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	62339115	A	A	62339115	3	1	589	1	0	0	0	0	1	0	0	0	4930	1319	46	2	1066	2	EEF1G	11	62339115	Missense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08	14736988	62339115	72667401	28	34653											
RTN3	10313	broad.mit.edu	37	11	63517659	63517659	+	Silent	SNP	C	A	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	63517659	A	A	63517659	2	1	589	1	0	0	0	0	0	0	0	1	13740	726	26	4		4	RTN3	11	63517659	Silent	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	1178544	63517659	71488857	29	34654											
RIMKLB	57494	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	8906537	8906537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	G	8906537	A	G	8906537	3	3	589	1	0	0	0	0	1	0	0	0	13379	217	8	3	559	3	RIMKLB	12	8906537	Missense_Mutation	SNP	A	TCGA-CZ-5982-01A-11D-1669-08		8906537	124945358	30	34655											
BRCA2	675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	32945126	32945126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	32945126	T	A	32945126	3	1	589	1	0	0	0	0	1	0	0	0	1501	1493	52	5	8595	5	BRCA2	13	32945126	Missense_Mutation	SNP	T	TCGA-CZ-5982-01A-11D-1669-08		32945126	82224752	31	34656											
SLC15A1	6564	broad.mit.edu;ucsc.edu	37	13	99361816	99361824	+	Splice_Site	DEL	CGTCACCTA	-	-	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	CGTCACCTA	CGTCACCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	-	99361824	-	-	99361816	8	5	589	1	0	1	0	1	0	0	1	0	14411	667	23	0		0	SLC15A1	13	99361816	Splice_Site	DEL	CGTCACCTA	TCGA-CZ-5982-01A-11D-1669-08	66416690	99361816	15808062	32	34657											
C14orf4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	77492045	77492045	+	Silent	SNP	C	C	G	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	G	77492045	C	G	77492045	2	3	589	1	0	0	0	0	0	0	0	1	1775	697	25	4		4	C14orf4	14	77492045	Silent	SNP	C	TCGA-CZ-5982-01A-11D-1669-08		77492045	29857495	33	34658											
WDR93	56964	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	90276249	90276249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	90276249	G	T	90276249	3	4	589	1	0	0	0	0	1	0	0	0	17352	1232	43	4	1389	4	WDR93	15	90276249	Missense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08		90276249	12255143	34	34659											
ITGAX	3687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31373943	31373943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	31373943	G	A	31373943	3	1	589	1	0	0	0	0	1	0	0	0	7896	1059	37	1	1274	1	ITGAX	16	31373943	Missense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08		31373943	58980810	35	34660											
IRX5	10265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	54967655	54967655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	54967655	G	T	54967655	3	4	589	1	0	0	0	0	1	0	0	0	7854	1174	41	4	1332	4	IRX5	16	54967655	Missense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08	23593712	54967655	35387098	36	34661											
RNF213	57674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78328249	78328249	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	C	78328249	T	C	78328249	2	2	589	1	0	0	0	0	0	0	0	1	13490	1606	56	3		3	RNF213	17	78328249	Silent	SNP	T	TCGA-CZ-5982-01A-11D-1669-08		78328249	2866961	37	34662											
HMSD	284293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	61627535	61627535	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	61627535	C	T	61627535	2	4	589	1	0	0	0	0	0	0	0	1	7253	883	31	1		1	HMSD	18	61627535	Silent	SNP	C	TCGA-CZ-5982-01A-11D-1669-08		61627535	16449713	38	34663											
SALL3	27164	broad.mit.edu	37	18	76752286	76752286	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	76752286	A	A	76752286	3	1	589	1	0	0	0	0	1	0	0	0	13825	739	26	4	301	4	SALL3	18	76752286	Missense_Mutation	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	15124751	76752286	1324962	39	34664											
ARID3A	1820	hgsc.bcm.edu	37	19	971949	971950	+	In_Frame_Ins	INS	-	-	GCA	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	GCA	971950	-	GCA	971949	7	5	589	1	0	1	1	0	0	0	0	0	916	1116	39	0	1696	0	ARID3A	19	971949	In_Frame_Ins	INS	-	TCGA-CZ-5982-01A-11D-1669-08		971949	58157034	40	34665											
ZNF181	339318	broad.mit.edu;hgsc.bcm.edu	37	19	35232767	35232767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	35232767	G	A	35232767	3	1	589	1	0	0	0	0	1	0	0	0	17761	1377	48	2	1495	2	ZNF181	19	35232767	Missense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08	34260818	35232767	23896216	41	34666											
FBL	2091	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40330954	40330954	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	40330954	A	T	40330954	4	4	589	1	0	0	0	0	0	1	0	0	5703	273	10	5	692	5	FBL	19	40330954	Nonsense_Mutation	SNP	A	TCGA-CZ-5982-01A-11D-1669-08	5098187	40330954	18798029	42	34667											
FAM71E1	112703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50979507	50979507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	50979507	G	A	50979507	3	1	589	1	0	0	0	0	1	0	0	0	5618	1058	37	1	572	1	FAM71E1	19	50979507	Missense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08	10648553	50979507	8149476	43	34668											
PHF20	51230	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34457385	34457385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	34457385	G	T	34457385	3	4	589	1	0	0	0	0	1	0	0	0	11838	1310	46	4	856	4	PHF20	20	34457385	Missense_Mutation	SNP	G	TCGA-CZ-5982-01A-11D-1669-08		34457385	28568135	44	34669											
SALL4	57167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	50407915	50407915	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	50407915	C	A	50407915	2	1	589	1	0	0	0	0	0	0	0	1	13826	581	21	4		4	SALL4	20	50407915	Silent	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	15950530	50407915	12617605	45	34670											
SON	6651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34922737	34922737	+	Silent	SNP	T	T	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	34922737	T	A	34922737	2	1	589	1	0	0	0	0	0	0	0	1	14939	1538	54	5		5	SON	21	34922737	Silent	SNP	T	TCGA-CZ-5982-01A-11D-1669-08		34922737	13207158	46	34671											
PNPLA3	80339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	44322959	44322959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	44322959	C	A	44322959	3	1	589	1	0	0	0	0	1	0	0	0	12173	855	30	4	338	4	PNPLA3	22	44322959	Missense_Mutation	SNP	C	TCGA-CZ-5982-01A-11D-1669-08		44322959	6981607	47	34672											
FBLN1	2192	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45931087	45931087	+	Silent	SNP	C	C	T	rs144704783		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	45931087	C	T	45931087	2	4	589	1	0	0	0	0	0	0	0	1	5705	535	19	1		1	FBLN1	22	45931087	Silent	SNP	C	TCGA-CZ-5982-01A-11D-1669-08	1608128	45931087	5373479	48	34673											
CXorf38	159013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	40506319	40506319	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	T	40506319	A	T	40506319	3	4	589	1	0	0	0	0	1	0	0	0	4109	214	8	5	688	5	CXorf38	23	40506319	Missense_Mutation	SNP	A	TCGA-CZ-5982-01A-11D-1669-08		40506319	114764241	49	34674											
UPRT	139596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	74517350	74517350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	A	74517350	T	A	74517350	3	1	589	1	0	0	0	0	1	0	0	0	17026	1841	64	5	538	5	UPRT	23	74517350	Missense_Mutation	SNP	T	TCGA-CZ-5982-01A-11D-1669-08	34011031	74517350	80753210	50	34675											
TEX13A	56157	hgsc.bcm.edu	37	X	104464282	104464282	+	Frame_Shift_Del	DEL	C	C	-	rs140438281		TCGA-CZ-5982-01A-11D-1669-08	TCGA-CZ-5982-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2c3c0f78-1c0a-48df-856e-0afbc2b5bceb	27bc1b1e-8214-4a64-95e7-9f94a435ed49	-	104464282	C	-	104464282	7	5	589	1	0	1	0	1	0	0	0	0	15788	855	30	0	639	0	TEX13A	23	104464282	Frame_Shift_Del	DEL	C	TCGA-CZ-5982-01A-11D-1669-08	29946932	104464282	50806278	51	34676											
KIAA1751	85452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	1919956	1919956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	G	1919956	C	G	1919956	3	3	590	1	0	0	0	0	1	0	0	0	8263	912	32	4	2057	4	KIAA1751	1	1919956	Missense_Mutation	SNP	C	TCGA-CZ-5984-01A-11D-1669-08		1919956	247330665	1	34677											
EPHA8	2046	broad.mit.edu	37	1	22913109	22913109	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	22913109	A	A	22913109	2	1	590	1	0	0	0	0	0	0	0	1	5175	1074	38	1		1	EPHA8	1	22913109	Silent	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	20993153	22913109	226337512	2	34678											
AGL	178	hgsc.bcm.edu;ucsc.edu	37	1	100336394	100336394	+	Silent	SNP	G	G	A	rs181804327	by1000genomes	TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	100336394	G	A	100336394	2	1	590	1	0	0	0	0	0	0	0	1	384	1103	39	1		1	AGL	1	100336394	Silent	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	77423285	100336394	148914227	3	34679											
CFHR4	10877	broad.mit.edu;hgsc.bcm.edu	37	1	196883638	196883638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	196883638	G	T	196883638	3	4	590	1	0	0	0	0	1	0	0	0	3289	1319	46	4	467	4	CFHR4	1	196883638	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	96547244	196883638	52366983	4	34680											
PPM1B	5495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44436369	44436369	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	C	44436369	T	C	44436369	2	2	590	1	0	0	0	0	0	0	0	1	12346	1635	57	3		3	PPM1B	2	44436369	Silent	SNP	T	TCGA-CZ-5984-01A-11D-1669-08		44436369	198763004	5	34681											
GLS	2744	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	191792206	191792206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	191792206	C	T	191792206	3	4	590	1	0	0	0	0	1	0	0	0	6470	594	21	2	1469	2	GLS	2	191792206	Missense_Mutation	SNP	C	TCGA-CZ-5984-01A-11D-1669-08	147355837	191792206	51407167	6	34682											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191622	10191623	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	10191623	-	A	10191622	7	5	590	1	0	1	1	0	0	0	0	0	17174	697	25	0	625	0	VHL	3	10191622	Frame_Shift_Ins	INS	-	TCGA-CZ-5984-01A-11D-1669-08		10191622	187830808	7	34683											
NPNT	255743	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	106848542	106848542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	106848542	G	T	106848542	3	4	590	1	0	0	0	0	1	0	0	0	10597	1020	36	4	287	4	NPNT	4	106848542	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08		106848542	84305734	8	34684											
ADAMTS19	171019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	129015567	129015567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	129015567	G	A	129015567	3	1	590	1	0	0	0	0	1	0	0	0	264	1175	41	2	2665	2	ADAMTS19	5	129015567	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08		129015567	51899693	9	34685											
KIF20A	10112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137522079	137522079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	137522079	C	T	137522079	3	4	590	1	0	0	0	0	1	0	0	0	8293	884	31	1	2380	1	KIF20A	5	137522079	Missense_Mutation	SNP	C	TCGA-CZ-5984-01A-11D-1669-08	8506512	137522079	43393181	10	34686											
PCDHA5	56143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140201426	140201426	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	140201426	C	T	140201426	2	4	590	1	0	0	0	0	0	0	0	1	11534	576	20	2		2	PCDHA5	5	140201426	Silent	SNP	C	TCGA-CZ-5984-01A-11D-1669-08	2679347	140201426	40713834	11	34687											
PCDHB15	56121	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140625765	140625765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	140625765	G	A	140625765	3	1	590	1	0	0	0	0	1	0	0	0	11547	1059	37	1	621	1	PCDHB15	5	140625765	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	424339	140625765	40289495	12	34688											
PCDHGB5	56101	broad.mit.edu;hgsc.bcm.edu	37	5	140778135	140778135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	140778135	G	T	140778135	3	4	590	1	0	0	0	0	1	0	0	0	11573	962	34	4	443	4	PCDHGB5	5	140778135	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	152370	140778135	40137125	13	34689											
SRF	6722	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43146557	43146557	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	43146557	G	A	43146557	2	1	590	1	0	0	0	0	0	0	0	1	15155	991	35	2		2	SRF	6	43146557	Silent	SNP	G	TCGA-CZ-5984-01A-11D-1669-08		43146557	127968510	14	34690											
COL12A1	1303	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	75861721	75861721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	75861721	G	T	75861721	3	4	590	1	0	0	0	0	1	0	0	0	3671	1386	48	4	5517	4	COL12A1	6	75861721	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	32715164	75861721	95253346	15	34691											
SHPRH	257218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	146273498	146273498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	146273498	A	T	146273498	3	4	590	1	0	0	0	0	1	0	0	0	14304	98	4	5	4457	5	SHPRH	6	146273498	Missense_Mutation	SNP	A	TCGA-CZ-5984-01A-11D-1669-08	70411777	146273498	24841569	16	34692											
EVX1	2128	hgsc.bcm.edu	37	7	27285647	27285648	+	In_Frame_Ins	INS	-	-	CCTGCC	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	CCTGCC	27285648	-	CCTGCC	27285647	7	5	590	1	0	1	1	0	0	0	0	0	5296	159	6	0	837	0	EVX1	7	27285647	In_Frame_Ins	INS	-	TCGA-CZ-5984-01A-11D-1669-08		27285647	131853016	17	34693											
BMPER	168667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	34085973	34085973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	G	34085973	A	G	34085973	3	3	590	1	0	0	0	0	1	0	0	0	1468	159	6	3	658	3	BMPER	7	34085973	Missense_Mutation	SNP	A	TCGA-CZ-5984-01A-11D-1669-08	6800326	34085973	125052690	18	34694											
LRWD1	222229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	102106463	102106463	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	102106463	G	T	102106463	4	4	590	1	0	0	0	0	0	1	0	0	9054	1059	37	4	286	4	LRWD1	7	102106463	Nonsense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	68020490	102106463	57032200	19	34695											
FOXP2	93986	broad.mit.edu	37	7	114269973	114269973	+	Silent	SNP	A	G	G	rs149757187		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	G	114269973	G	G	114269973	2	3	590	1	0	0	0	0	0	0	0	1	6034	40	2	3		3	FOXP2	7	114269973	Silent	SNP	A	TCGA-CZ-5984-01A-11D-1669-08	12163510	114269973	44868690	20	34696											
ZFPM2	23414	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	106811085	106811085	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	106811085	C	A	106811085	2	1	590	1	0	0	0	0	0	0	0	1	17670	610	22	4		4	ZFPM2	8	106811085	Silent	SNP	C	TCGA-CZ-5984-01A-11D-1669-08		106811085	39552937	21	34697											
DNAJB5	25822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	34997035	34997035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	C	34997035	T	C	34997035	3	2	590	1	0	0	0	0	1	0	0	0	4625	1580	55	3	1056	3	DNAJB5	9	34997035	Missense_Mutation	SNP	T	TCGA-CZ-5984-01A-11D-1669-08		34997035	106216396	22	34698											
GCNT1	2650	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	79118095	79118095	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	79118095	G	T	79118095	2	4	590	1	0	0	0	0	0	0	0	1	6307	1277	45	4		4	GCNT1	9	79118095	Silent	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	44121060	79118095	62095336	23	34699											
C9orf103	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	86258688	86258688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	C	86258688	T	C	86258688	3	2	590	1	0	0	0	0	1	0	0	0	2448	1464	51	3	429	3	C9orf103	9	86258688	Missense_Mutation	SNP	T	TCGA-CZ-5984-01A-11D-1669-08	7140593	86258688	54954743	24	34700											
CSGALNACT2	55454	hgsc.bcm.edu;ucsc.edu	37	10	43654206	43654207	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	43654207	-	T	43654206	7	5	590	1	0	1	1	0	0	0	0	0	3941	900	32	0	711	0	CSGALNACT2	10	43654206	Frame_Shift_Ins	INS	-	TCGA-CZ-5984-01A-11D-1669-08		43654206	91880541	25	34701											
ANXA7	310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75155821	75155821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	75155821	G	A	75155821	3	1	590	1	0	0	0	0	1	0	0	0	723	942	33	2	1020	2	ANXA7	10	75155821	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	31501615	75155821	60378926	26	34702											
WAPAL	23063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	88259942	88259942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	88259942	C	A	88259942	3	1	590	1	0	0	0	0	1	0	0	0	17260	855	30	4	2582	4	WAPAL	10	88259942	Missense_Mutation	SNP	C	TCGA-CZ-5984-01A-11D-1669-08	13104121	88259942	47274805	27	34703											
PNLIPRP3	119548	hgsc.bcm.edu;ucsc.edu	37	10	118220558	118220558	+	Missense_Mutation	SNP	G	G	T	rs114674677	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	118220558	G	T	118220558	3	4	590	1	0	0	0	0	1	0	0	0	12159	1145	40	4	668	4	PNLIPRP3	10	118220558	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	29960616	118220558	17314189	28	34704											
ALDH3B2	222	broad.mit.edu	37	11	67433825	67433825	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	C	67433825	C	C	67433825	3	2	590	1	0	0	0	0	1	0	0	0	500	1792	62	3	982	3	ALDH3B2	11	67433825	Missense_Mutation	SNP	T	TCGA-CZ-5984-01A-11D-1669-08		67433825	67572691	29	34705											
SMUG1	23583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	54577492	54577492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	C	54577492	T	C	54577492	3	2	590	1	0	0	0	0	1	0	0	0	14831	1783	62	3	587	3	SMUG1	12	54577492	Missense_Mutation	SNP	T	TCGA-CZ-5984-01A-11D-1669-08		54577492	79274403	30	34706											
COQ6	51004	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	74420179	74420179	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	74420179	G	T	74420179	4	4	590	1	0	0	0	0	0	1	0	0	3751	1059	37	4	211	4	COQ6	14	74420179	Nonsense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08		74420179	32929361	31	34707											
ALDH6A1	4329	broad.mit.edu;hgsc.bcm.edu	37	14	74531621	74531621	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	74531621	C	A	74531621	2	1	590	1	0	0	0	0	0	0	0	1	503	581	21	4		4	ALDH6A1	14	74531621	Silent	SNP	C	TCGA-CZ-5984-01A-11D-1669-08	111442	74531621	32817919	32	34708											
TTC7B	145567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	91123577	91123577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	91123577	G	A	91123577	3	1	590	1	0	0	0	0	1	0	0	0	16725	1203	42	2	1289	2	TTC7B	14	91123577	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	16591956	91123577	16225963	33	34709											
TM6SF1	53346	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	83791521	83791521	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	G	83791521	C	G	83791521	3	3	590	1	0	0	0	0	1	0	0	0	15984	478	17	4	516	4	TM6SF1	15	83791521	Missense_Mutation	SNP	C	TCGA-CZ-5984-01A-11D-1669-08		83791521	18739871	34	34710											
PRKCB	5579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	24046821	24046821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	24046821	G	A	24046821	3	1	590	1	0	0	0	0	1	0	0	0	12518	1087	38	1	500	1	PRKCB	16	24046821	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08		24046821	66307932	35	34711											
RAB34	83871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27041908	27041908	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	27041908	G	A	27041908	2	1	590	1	0	0	0	0	0	0	0	1	12937	1161	41	2		2	RAB34	17	27041908	Silent	SNP	G	TCGA-CZ-5984-01A-11D-1669-08		27041908	54153302	36	34712											
CACNA1G	8913	broad.mit.edu;hgsc.bcm.edu	37	17	48703992	48703992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	48703992	C	A	48703992	3	1	590	1	0	0	0	0	1	0	0	0	2546	767	27	4	7431	4	CACNA1G	17	48703992	Missense_Mutation	SNP	C	TCGA-CZ-5984-01A-11D-1669-08	21662084	48703992	32491218	37	34713											
ARHGDIA	396	hgsc.bcm.edu;ucsc.edu	37	17	79826812	79826814	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	-	79826814	GTC	-	79826812	7	5	590	1	0	1	0	1	0	0	0	0	890	1368	48	0	63	0	ARHGDIA	17	79826812	In_Frame_Del	DEL	GTC	TCGA-CZ-5984-01A-11D-1669-08	31122820	79826812	1368398	38	34714											
ST8SIA5	29906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	44268797	44268797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	44268797	C	T	44268797	3	4	590	1	0	0	0	0	1	0	0	0	15247	835	29	2	749	2	ST8SIA5	18	44268797	Missense_Mutation	SNP	C	TCGA-CZ-5984-01A-11D-1669-08		44268797	33808451	39	34715											
SALL3	27164	broad.mit.edu;ucsc.edu	37	18	76753965	76753965	+	Silent	SNP	G	A	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	76753965	A	A	76753965	2	1	590	1	0	0	0	0	0	0	0	1	13825	1132	40	1		1	SALL3	18	76753965	Silent	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	32485168	76753965	1323283	40	34716											
COL5A3	50509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	10090547	10090547	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	10090547	G	A	10090547	4	1	590	1	0	0	0	0	0	1	0	0	3700	1095	38	1	2681	1	COL5A3	19	10090547	Nonsense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08		10090547	49038436	41	34717											
ZNF335	63925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44586316	44586316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	T	44586316	G	T	44586316	3	4	590	1	0	0	0	0	1	0	0	0	17864	971	34	4	1725	4	ZNF335	20	44586316	Missense_Mutation	SNP	G	TCGA-CZ-5984-01A-11D-1669-08		44586316	18439204	42	34718											
C21orf70	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	46363676	46363676	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	46363676	G	A	46363676	2	1	590	1	0	0	0	0	0	0	0	1	2135	1335	47	2		2	C21orf70	21	46363676	Silent	SNP	G	TCGA-CZ-5984-01A-11D-1669-08		46363676	1766219	43	34719											
SLC19A1	6573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	46951439	46951439	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	A	46951439	G	A	46951439	2	1	590	1	0	0	0	0	0	0	0	1	14441	1219	43	2		2	SLC19A1	21	46951439	Silent	SNP	G	TCGA-CZ-5984-01A-11D-1669-08	587763	46951439	1178456	44	34720											
KDELR3	11015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	38877247	38877247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	C	38877247	T	C	38877247	3	2	590	1	0	0	0	0	1	0	0	0	8128	1435	50	3	396	3	KDELR3	22	38877247	Missense_Mutation	SNP	T	TCGA-CZ-5984-01A-11D-1669-08		38877247	12427319	45	34721											
TOB2	10766	hgsc.bcm.edu;ucsc.edu	37	22	41832766	41832766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	-	41832766	C	-	41832766	7	5	590	1	0	1	0	1	0	0	0	0	16360	739	26	0	454	0	TOB2	22	41832766	Frame_Shift_Del	DEL	C	TCGA-CZ-5984-01A-11D-1669-08	2955519	41832766	9471800	46	34722											
UBE2A	7319	hgsc.bcm.edu	37	X	118715555	118715560	+	In_Frame_Del	DEL	AAATGG	AAATGG	-	novel		TCGA-CZ-5984-01A-11D-1669-08	TCGA-CZ-5984-11A-01D-1669-08	AAATGG	AAATGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e8e486-0c93-4056-88ed-83fd0d5a7f2c	671ebef6-9c6d-48b6-909c-7cfe2c2e44d0	-	118715560	AAATGG	-	118715555	7	5	590	1	0	1	0	1	0	0	0	0	16856	117	5	0	251	0	UBE2A	23	118715555	In_Frame_Del	DEL	AAATGG	TCGA-CZ-5984-01A-11D-1669-08		118715555	36555005	47	34723											
PADI6	353238	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	17727910	17727910	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	17727910	C	T	17727910	4	4	591	1	0	0	0	0	0	1	0	0	11388	825	29	2	2124	2	PADI6	1	17727910	Nonsense_Mutation	SNP	C	TCGA-CZ-5985-01A-11D-1669-08		17727910	231522711	1	34724											
EPHA8	2046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22895795	22895795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	22895795	C	A	22895795	3	1	591	1	0	0	0	0	1	0	0	0	5175	477	17	4	114	4	EPHA8	1	22895795	Missense_Mutation	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	5167885	22895795	226354826	2	34725	453	2									
EPHA8	2046	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22895796	22895796	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	C	22895796	A	C	22895796	3	2	591	1	0	0	0	0	1	0	0	0	5175	159	6	5	115	5	EPHA8	1	22895796	Missense_Mutation	SNP	A	TCGA-CZ-5985-01A-11D-1669-08	1	22895796	226354825	3	34726	453	2									
ST3GAL3	6487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	44365370	44365370	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	C	44365370	T	C	44365370	2	2	591	1	0	0	0	0	0	0	0	1	15228	1722	60	3		3	ST3GAL3	1	44365370	Silent	SNP	T	TCGA-CZ-5985-01A-11D-1669-08	21469574	44365370	204885251	4	34727											
PODN	127435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	53535790	53535790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	53535790	G	T	53535790	3	4	591	1	0	0	0	0	1	0	0	0	12185	1145	40	4	413	4	PODN	1	53535790	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	9170420	53535790	195714831	5	34728											
GPR61	83873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110086219	110086219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	110086219	C	T	110086219	3	4	591	1	0	0	0	0	1	0	0	0	6709	623	22	2	577	2	GPR61	1	110086219	Missense_Mutation	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	56550429	110086219	139164402	6	34729											
KCNC4	3749	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110768698	110768698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	110768698	G	A	110768698	3	1	591	1	0	0	0	0	1	0	0	0	8024	1203	42	2	1861	2	KCNC4	1	110768698	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	682479	110768698	138481923	7	34730											
MTMR11	10903	broad.mit.edu;hgsc.bcm.edu	37	1	149901022	149901022	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	149901022	T	A	149901022	3	1	591	1	0	0	0	0	1	0	0	0	9947	1535	53	5	43	5	MTMR11	1	149901022	Missense_Mutation	SNP	T	TCGA-CZ-5985-01A-11D-1669-08	39132324	149901022	99349599	8	34731											
ARHGEF11	9826	hgsc.bcm.edu;ucsc.edu	37	1	156914213	156914214	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	-	156914214	TA	-	156914213	7	5	591	1	0	1	0	1	0	0	0	0	896	1638	57	0	1728	0	ARHGEF11	1	156914213	Frame_Shift_Del	DEL	TA	TCGA-CZ-5985-01A-11D-1669-08	7013191	156914213	92336408	9	34732											
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186099138	186099138	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	G	186099138	T	G	186099138	3	3	591	1	0	0	0	0	1	0	0	0	7227	1800	63	5	13279	5	HMCN1	1	186099138	Missense_Mutation	SNP	T	TCGA-CZ-5985-01A-11D-1669-08	29184925	186099138	63151483	10	34733											
KIF26B	55083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	245583033	245583033	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	245583033	C	T	245583033	2	4	591	1	0	0	0	0	0	0	0	1	8302	668	24	2		2	KIF26B	1	245583033	Silent	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	59483895	245583033	3667588	11	34734											
AHCTF1	25909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247081660	247081660	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	G	247081660	T	G	247081660	2	3	591	1	0	0	0	0	0	0	0	1	408	1617	56	5		5	AHCTF1	1	247081660	Silent	SNP	T	TCGA-CZ-5985-01A-11D-1669-08	1498627	247081660	2168961	12	34735											
MEMO1	51072	broad.mit.edu	37	2	32093458	32093458	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	32093458	A	A	32093458	3	1	591	1	0	0	0	0	1	0	0	0	9478	1406	49	5	31	5	MEMO1	2	32093458	Missense_Mutation	SNP	T	TCGA-CZ-5985-01A-11D-1669-08		32093458	211105915	13	34736											
POLR1B	84172	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	113308515	113308515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	113308515	C	A	113308515	3	1	591	1	0	0	0	0	1	0	0	0	12217	565	20	4	716	4	POLR1B	2	113308515	Missense_Mutation	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	81215057	113308515	129890858	14	34737											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10183858	10183859	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	CA	10183859	-	CA	10183858	7	5	591	1	0	1	1	0	0	0	0	0	17174	845	30	0	329	0	VHL	3	10183858	Frame_Shift_Ins	INS	-	TCGA-CZ-5985-01A-11D-1669-08		10183858	187838572	15	34738											
BAP1	8314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52439311	52439311	+	Splice_Site	SNP	C	C	A	rs9848343	bycluster;alternate_allele	TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	52439311	C	A	52439311	5	1	591	1	0	0	0	0	0	0	1	0	1311	927	32	4	1286	4	BAP1	3	52439311	Splice_Site	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	42255453	52439311	145583119	16	34739											
TMF1	7110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	69073260	69073260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	C	69073260	A	C	69073260	3	2	591	1	0	0	0	0	1	0	0	0	16240	214	8	5	205	5	TMF1	3	69073260	Missense_Mutation	SNP	A	TCGA-CZ-5985-01A-11D-1669-08	16633949	69073260	128949170	17	34740											
MYLK	4638	hgsc.bcm.edu	37	3	123411691	123411691	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	123411691	G	A	123411691	2	1	591	1	0	0	0	0	0	0	0	1	10063	929	33	2		2	MYLK	3	123411691	Silent	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	54338431	123411691	74610739	18	34741	454	2									
MYLK	4638	hgsc.bcm.edu;ucsc.edu	37	3	123411694	123411694	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	-	123411694	T	-	123411694	7	5	591	1	0	1	0	1	0	0	0	0	10063	1683	59	0	2355	0	MYLK	3	123411694	Frame_Shift_Del	DEL	T	TCGA-CZ-5985-01A-11D-1669-08	3	123411694	74610736	19	34742	454	2									
MUC4	4585	broad.mit.edu	37	3	195511144	195511144	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	195511144	T	T	195511144	3	4	591	1	0	0	0	0	1	0	0	0	9985	1261	44	4		4	MUC4	3	195511144	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	72099450	195511144	2511286	20	34743											
ATP8A1	10396	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	42581897	42581897	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	42581897	G	T	42581897	2	4	591	1	0	0	0	0	0	0	0	1	1192	929	33	4		4	ATP8A1	4	42581897	Silent	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		42581897	148572379	21	34744											
EMCN	51705	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	101331487	101331487	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	101331487	G	T	101331487	2	4	591	1	0	0	0	0	0	0	0	1	5088	1335	47	4		4	EMCN	4	101331487	Silent	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	58749590	101331487	89822789	22	34745											
BDH2	56898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	104016427	104016427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	104016427	T	A	104016427	3	1	591	1	0	0	0	0	1	0	0	0	1391	1548	54	5	685	5	BDH2	4	104016427	Missense_Mutation	SNP	T	TCGA-CZ-5985-01A-11D-1669-08	2684940	104016427	87137849	23	34746											
TLL1	7092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	166929189	166929189	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	166929189	C	T	166929189	2	4	591	1	0	0	0	0	0	0	0	1	15957	477	17	2		2	TLL1	4	166929189	Silent	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	62912762	166929189	24225087	24	34747											
NIPBL	25836	broad.mit.edu;hgsc.bcm.edu	37	5	37044460	37044460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	37044460	T	A	37044460	3	1	591	1	0	0	0	0	1	0	0	0	10435	1490	52	5	6254	5	NIPBL	5	37044460	Missense_Mutation	SNP	T	TCGA-CZ-5985-01A-11D-1669-08		37044460	143870800	25	34748											
AGGF1	55109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	76342255	76342255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	76342255	G	T	76342255	3	4	591	1	0	0	0	0	1	0	0	0	382	933	33	4	976	4	AGGF1	5	76342255	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	39297795	76342255	104573005	26	34749											
HSPA9	3313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137903401	137903401	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	137903401	C	T	137903401	2	4	591	1	0	0	0	0	0	0	0	1	7424	593	21	2		2	HSPA9	5	137903401	Silent	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	61561146	137903401	43011859	27	34750											
CD83	9308	broad.mit.edu	37	6	14118278	14118278	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	14118278	A	A	14118278	4	1	591	1	0	0	0	0	0	1	0	0	3043	489	17	4	141	4	CD83	6	14118278	Nonsense_Mutation	SNP	C	TCGA-CZ-5985-01A-11D-1669-08		14118278	156996789	28	34751											
SDK1	221935	broad.mit.edu;ucsc.edu	37	7	4169711	4169711	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	C	4169711	C	C	4169711	3	2	591	1	0	0	0	0	1	0	0	0	13981	1175	41	4	4217	4	SDK1	7	4169711	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		4169711	154968952	29	34752											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	82785211	82785211	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	82785211	G	T	82785211	4	4	591	1	0	0	0	0	0	1	0	0	11590	1294	45	4	14795	4	PCLO	7	82785211	Nonsense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	78615500	82785211	76353452	30	34753											
MLL5	55904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	104752397	104752397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	104752397	G	T	104752397	3	4	591	1	0	0	0	0	1	0	0	0	9631	962	34	4	4292	4	MLL5	7	104752397	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	21967186	104752397	54386266	31	34754											
ZNF398	57541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	148875840	148875840	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	-	148875840	T	-	148875840	7	5	591	1	0	1	0	1	0	0	0	0	17897	1596	56	0	898	0	ZNF398	7	148875840	Frame_Shift_Del	DEL	T	TCGA-CZ-5985-01A-11D-1669-08	44123443	148875840	10262823	32	34755											
LRRC19	64922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	26999658	26999658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	26999658	G	A	26999658	3	1	591	1	0	0	0	0	1	0	0	0	8982	1232	43	2	1093	2	LRRC19	9	26999658	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		26999658	114213773	33	34756											
C9orf25	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	34402709	34402709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	34402709	C	T	34402709	3	4	591	1	0	0	0	0	1	0	0	0	2478	884	31	1	316	1	C9orf25	9	34402709	Missense_Mutation	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	7403051	34402709	106810722	34	34757											
GAPVD1	26130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	128099711	128099711	+	Silent	SNP	A	A	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	128099711	A	T	128099711	2	4	591	1	0	0	0	0	0	0	0	1	6246	436	16	5		5	GAPVD1	9	128099711	Silent	SNP	A	TCGA-CZ-5985-01A-11D-1669-08	93697002	128099711	13113720	35	34758											
RBM17	84991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	6147033	6147033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	6147033	G	A	6147033	3	1	591	1	0	0	0	0	1	0	0	0	13132	942	33	2	390	2	RBM17	10	6147033	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		6147033	129387714	36	34759											
CDH23	64072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	73537549	73537549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	73537549	G	T	73537549	3	4	591	1	0	0	0	0	1	0	0	0	3110	971	34	4	5453	4	CDH23	10	73537549	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	67390516	73537549	61997198	37	34760											
CDH23	64072	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	73574721	73574721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	73574721	G	A	73574721	3	1	591	1	0	0	0	0	1	0	0	0	3110	1291	45	2	10445	2	CDH23	10	73574721	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	37172	73574721	61960026	38	34761											
DNTT	1791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	98064450	98064450	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	98064450	G	T	98064450	4	4	591	1	0	0	0	0	0	1	0	0	4682	1291	45	4	198	4	DNTT	10	98064450	Nonsense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	24489729	98064450	37470297	39	34762											
SPRYD5	0	broad.mit.edu	37	11	55653110	55653110	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	55653110	A	A	55653110	3	1	591	1	0	0	0	0	1	0	0	0	15123	1377	48	2	208	2	SPRYD5	11	55653110	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		55653110	79353406	40	34763											
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117309653	117309653	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	117309653	C	A	117309653	2	1	591	1	0	0	0	0	0	0	0	1	4771	523	19	4		4	DSCAML1	11	117309653	Silent	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	61656543	117309653	17696863	41	34764											
SLC2A14	144195	broad.mit.edu;hgsc.bcm.edu	37	12	7967055	7967055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	7967055	C	T	7967055	3	4	591	1	0	0	0	0	1	0	0	0	14556	565	20	2	146	2	SLC2A14	12	7967055	Missense_Mutation	SNP	C	TCGA-CZ-5985-01A-11D-1669-08		7967055	125884840	42	34765											
SLITRK6	84189	broad.mit.edu;ucsc.edu	37	13	86368849	86368849	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	86368849	A	A	86368849	4	1	591	1	0	0	0	0	0	1	0	0	14760	1153	40	1	734	1	SLITRK6	13	86368849	Nonsense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		86368849	28801029	43	34766											
NDN	4692	broad.mit.edu;hgsc.bcm.edu	37	15	23931882	23931882	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	23931882	G	A	23931882	2	1	591	1	0	0	0	0	0	0	0	1	10254	1368	48	2		2	NDN	15	23931882	Silent	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		23931882	78599510	44	34767											
ATF7IP2	80063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	10524570	10524570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	C	10524570	G	C	10524570	3	2	591	1	0	0	0	0	1	0	0	0	1088	1020	36	4	95	4	ATF7IP2	16	10524570	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		10524570	79830183	45	34768											
ACSM5	54988	hgsc.bcm.edu;ucsc.edu	37	16	20435331	20435332	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	20435332	-	A	20435331	7	5	591	1	0	1	1	0	0	0	0	0	187	1509	53	0	879	0	ACSM5	16	20435331	Frame_Shift_Ins	INS	-	TCGA-CZ-5985-01A-11D-1669-08	9910761	20435331	69919422	46	34769											
GTF3C1	2975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	27504025	27504025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	C	27504025	A	C	27504025	3	2	591	1	0	0	0	0	1	0	0	0	6879	10	1	5	3523	5	GTF3C1	16	27504025	Missense_Mutation	SNP	A	TCGA-CZ-5985-01A-11D-1669-08	7068694	27504025	62850728	47	34770											
C16orf53	0	broad.mit.edu	37	16	29831005	29831005	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	C	29831005	C	C	29831005	3	2	591	1	0	0	0	0	1	0	0	0	1820	275	10	5	705	5	C16orf53	16	29831005	Missense_Mutation	SNP	A	TCGA-CZ-5985-01A-11D-1669-08	2326980	29831005	60523748	48	34771											
SPG7	6687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	89595969	89595969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	89595969	A	T	89595969	3	4	591	1	0	0	0	0	1	0	0	0	15056	69	3	5	865	5	SPG7	16	89595969	Missense_Mutation	SNP	A	TCGA-CZ-5985-01A-11D-1669-08	59764964	89595969	758784	49	34772											
C19orf57	79173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14000172	14000172	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	14000172	C	T	14000172	2	4	591	1	0	0	0	0	0	0	0	1	1941	796	28	2		2	C19orf57	19	14000172	Silent	SNP	C	TCGA-CZ-5985-01A-11D-1669-08		14000172	45128811	50	34773											
SLC8A2	6543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	47969450	47969450	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	47969450	G	T	47969450	2	4	591	1	0	0	0	0	0	0	0	1	14720	1144	40	4		4	SLC8A2	19	47969450	Silent	SNP	G	TCGA-CZ-5985-01A-11D-1669-08	33969278	47969450	11159533	51	34774											
HRC	3270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49658118	49658118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	C	49658118	T	C	49658118	3	2	591	1	0	0	0	0	1	0	0	0	7359	1551	54	3	1746	3	HRC	19	49658118	Missense_Mutation	SNP	T	TCGA-CZ-5985-01A-11D-1669-08	1688668	49658118	9470865	52	34775											
ZNF615	284370	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	52497620	52497620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	G	52497620	A	G	52497620	3	3	591	1	0	0	0	0	1	0	0	0	18052	159	6	3	1490	3	ZNF615	19	52497620	Missense_Mutation	SNP	A	TCGA-CZ-5985-01A-11D-1669-08	2839502	52497620	6631363	53	34776											
PREX1	57580	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47266686	47266686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	47266686	G	A	47266686	3	1	591	1	0	0	0	0	1	0	0	0	12486	1232	43	2	2171	2	PREX1	20	47266686	Missense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		47266686	15758834	54	34777											
TMPRSS15	5651	broad.mit.edu;hgsc.bcm.edu	37	21	19716370	19716370	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	19716370	G	T	19716370	4	4	591	1	0	0	0	0	0	1	0	0	16258	1372	48	4	1940	4	TMPRSS15	21	19716370	Nonsense_Mutation	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		19716370	28413525	55	34778											
DEPDC5	9681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	32198825	32198825	+	Splice_Site	SNP	G	G	C	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	C	32198825	G	C	32198825	5	2	591	1	0	0	0	0	0	0	1	0	4444	1275	44	4	1136	4	DEPDC5	22	32198825	Splice_Site	SNP	G	TCGA-CZ-5985-01A-11D-1669-08		32198825	19105741	56	34779											
HUWE1	10075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	53615356	53615356	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	A	53615356	T	A	53615356	3	1	591	1	0	0	0	0	1	0	0	0	7468	1725	60	5	8716	5	HUWE1	23	53615356	Missense_Mutation	SNP	T	TCGA-CZ-5985-01A-11D-1669-08		53615356	101655204	57	34780											
ARHGEF6	9459	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135829736	135829736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5985-01A-11D-1669-08	TCGA-CZ-5985-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad5eae3d-2f73-49d2-be47-5891e7772bc6	9cb6f5df-835c-4a8b-8524-2a889e3049af	T	135829736	C	T	135829736	3	4	591	1	0	0	0	0	1	0	0	0	910	826	29	2	2145	2	ARHGEF6	23	135829736	Missense_Mutation	SNP	C	TCGA-CZ-5985-01A-11D-1669-08	82214380	135829736	19440824	58	34781											
VPS13D	55187	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	12408985	12408985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	12408985	G	A	12408985	3	1	592	1	0	0	0	0	1	0	0	0	17204	1291	45	2	9349	2	VPS13D	1	12408985	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08		12408985	236841636	1	34782											
PADI3	51702	broad.mit.edu;ucsc.edu	37	1	17609393	17609393	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	G	17609393	G	G	17609393	3	3	592	1	0	0	0	0	1	0	0	0	11386	623	22	4	1876	4	PADI3	1	17609393	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	5200408	17609393	231641228	2	34783											
C1orf135	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	26162026	26162026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	26162026	C	T	26162026	3	4	592	1	0	0	0	0	1	0	0	0	2001	855	30	2	545	2	C1orf135	1	26162026	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	8552633	26162026	223088595	3	34784											
CSMD2	114784	broad.mit.edu;hgsc.bcm.edu	37	1	34180251	34180251	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	34180251	G	A	34180251	2	1	592	1	0	0	0	0	0	0	0	1	3947	1103	39	1		1	CSMD2	1	34180251	Silent	SNP	G	TCGA-CZ-5986-01A-11D-1669-08	8018225	34180251	215070370	4	34785											
LRRIQ3	127255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	74507410	74507410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	74507410	C	T	74507410	3	4	592	1	0	0	0	0	1	0	0	0	9037	652	23	1	677	1	LRRIQ3	1	74507410	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	40327159	74507410	174743211	5	34786											
NFASC	23114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	204971726	204971726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	204971726	A	T	204971726	3	4	592	1	0	0	0	0	1	0	0	0	10366	130	5	5	3650	5	NFASC	1	204971726	Missense_Mutation	SNP	A	TCGA-CZ-5986-01A-11D-1669-08	130464316	204971726	44278895	6	34787											
RAD51AP2	729475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	17696802	17696802	+	Missense_Mutation	SNP	C	C	G	rs140673266	by1000genomes;alternate_allele	TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	G	17696802	C	G	17696802	3	3	592	1	0	0	0	0	1	0	0	0	13000	913	32	4	610	4	RAD51AP2	2	17696802	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08		17696802	225502571	7	34788											
YIPF4	84272	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32526479	32526479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	C	32526479	T	C	32526479	3	2	592	1	0	0	0	0	1	0	0	0	17492	1406	49	3	530	3	YIPF4	2	32526479	Missense_Mutation	SNP	T	TCGA-CZ-5986-01A-11D-1669-08	14829677	32526479	210672894	8	34789											
TTLL4	9654	broad.mit.edu;ucsc.edu	37	2	219609908	219609908	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	219609908	A	A	219609908	3	1	592	1	0	0	0	0	1	0	0	0	16741	1609	56	5	1752	5	TTLL4	2	219609908	Missense_Mutation	SNP	T	TCGA-CZ-5986-01A-11D-1669-08	187083429	219609908	23589465	9	34790											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188319	10188344	+	In_Frame_Del	DEL	AGGTACTGACGTTTTACTTTTTAAAA	AGGTACTGACGTTTTACTTTTTAAAA	-	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	AGGTACTGACGTTTTACTTTTTAAAA	AGGTACTGACGTTTTACTTTTTAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	-	10188344	AGGTACTGACGTTTTACTTTTTAAAA	-	10188319	7	5	592	1	0	1	0	1	0	0	0	0	17174	202	7	0	468	0	VHL	3	10188319	In_Frame_Del	DEL	AGGTACTGACGTTTTACTTTTTAAAA	TCGA-CZ-5986-01A-11D-1669-08		10188319	187834111	10	34791											
SLC22A13	9390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38307442	38307442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	38307442	C	A	38307442	3	1	592	1	0	0	0	0	1	0	0	0	14457	680	24	4	93	4	SLC22A13	3	38307442	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	28119123	38307442	159714988	11	34792											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52692236	52692236	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	-	52692236	A	-	52692236	7	5	592	1	0	1	0	1	0	0	0	0	11498	243	9	0	4380	0	PBRM1	3	52692236	Frame_Shift_Del	DEL	A	TCGA-CZ-5986-01A-11D-1669-08	14384794	52692236	145330194	12	34793											
MUC20	200958	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	195453061	195453061	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	195453061	C	A	195453061	2	1	592	1	0	0	0	0	0	0	0	1	9983	610	22	4		4	MUC20	3	195453061	Silent	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	142760825	195453061	2569369	13	34794											
WHSC1	7468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	1980470	1980470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	1980470	C	T	1980470	3	4	592	1	0	0	0	0	1	0	0	0	17374	478	17	2	4090	2	WHSC1	4	1980470	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08		1980470	189173806	14	34795											
HERC3	8916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	89577067	89577067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	G	89577067	A	G	89577067	3	3	592	1	0	0	0	0	1	0	0	0	7066	449	16	3	976	3	HERC3	4	89577067	Missense_Mutation	SNP	A	TCGA-CZ-5986-01A-11D-1669-08	87596597	89577067	101577209	15	34796											
SLC10A7	84068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	147438224	147438224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	G	147438224	A	G	147438224	3	3	592	1	0	0	0	0	1	0	0	0	14392	449	16	3	962	3	SLC10A7	4	147438224	Missense_Mutation	SNP	A	TCGA-CZ-5986-01A-11D-1669-08	57861157	147438224	43716052	16	34797											
FAM169A	26049	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	74097435	74097435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	74097435	G	A	74097435	3	1	592	1	0	0	0	0	1	0	0	0	5491	1203	42	2	1100	2	FAM169A	5	74097435	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08		74097435	106817825	17	34798	455	2									
FAM169A	26049	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	74097436	74097436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	74097436	C	T	74097436	3	4	592	1	0	0	0	0	1	0	0	0	5491	710	25	2	1101	2	FAM169A	5	74097436	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	1	74097436	106817824	18	34799	455	2									
ANKRD32	84250	hgsc.bcm.edu;ucsc.edu	37	5	94030788	94030789	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	94030789	-	A	94030788	7	5	592	1	0	1	1	0	0	0	0	0	660	1764	61	0	3026	0	ANKRD32	5	94030788	Frame_Shift_Ins	INS	-	TCGA-CZ-5986-01A-11D-1669-08	19933352	94030788	86884472	19	34800											
PDLIM4	8572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	131606692	131606692	+	Missense_Mutation	SNP	G	G	C	rs141857035	byfrequency;alternate_allele	TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	C	131606692	G	C	131606692	3	2	592	1	0	0	0	0	1	0	0	0	11689	1349	47	4	426	4	PDLIM4	5	131606692	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08	37575904	131606692	49308568	20	34801											
PCDHGA1	56114	broad.mit.edu;hgsc.bcm.edu	37	5	140712348	140712348	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	140712348	G	A	140712348	2	1	592	1	0	0	0	0	0	0	0	1	11557	1103	39	1		1	PCDHGA1	5	140712348	Silent	SNP	G	TCGA-CZ-5986-01A-11D-1669-08	9105656	140712348	40202912	21	34802											
PMS2	5395	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	6048687	6048687	+	RNA	SNP	G	G	C	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	C	6048687	G	C	6048687	1	2	592	0	1	0	0	0	0	0	0	0	12150	1044	36	4		4	PMS2	7	6048687	RNA	SNP	G	TCGA-CZ-5986-01A-11D-1669-08		6048687	153089976	22	34803											
ANKRD7	56311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	117864901	117864901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	117864901	G	A	117864901	3	1	592	1	0	0	0	0	1	0	0	0	686	971	34	2	19	2	ANKRD7	7	117864901	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08	111816214	117864901	41273762	23	34804											
WDR91	29062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	134891906	134891906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	134891906	T	A	134891906	3	1	592	1	0	0	0	0	1	0	0	0	17350	1580	55	5	1731	5	WDR91	7	134891906	Missense_Mutation	SNP	T	TCGA-CZ-5986-01A-11D-1669-08	17027005	134891906	24246757	24	34805											
ADCK2	90956	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	140373652	140373652	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	140373652	G	A	140373652	2	1	592	1	0	0	0	0	0	0	0	1	289	1277	45	2		2	ADCK2	7	140373652	Silent	SNP	G	TCGA-CZ-5986-01A-11D-1669-08	5481746	140373652	18765011	25	34806											
MLL3	58508	hgsc.bcm.edu;ucsc.edu	37	7	151836874	151836875	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	CC	CC	CC	-	CC	CC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	-	151836875	CC	-	151836874	7	5	592	1	0	1	0	1	0	0	0	0	9629	726	26	0	405	0	MLL3	7	151836874	Frame_Shift_Del	DEL	CC	TCGA-CZ-5986-01A-11D-1669-08	11463222	151836874	7301789	26	34807											
NECAB1	64168	broad.mit.edu;hgsc.bcm.edu	37	8	91962067	91962067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	91962067	G	A	91962067	3	1	592	1	0	0	0	0	1	0	0	0	10311	1087	38	1	935	1	NECAB1	8	91962067	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08		91962067	54401955	27	34808											
TLN1	7094	broad.mit.edu	37	9	35718904	35718904	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	35718904	T	T	35718904	3	4	592	1	0	0	0	0	1	0	0	0	15959	1116	39	4	5889	4	TLN1	9	35718904	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08		35718904	105494527	28	34809											
GOLGA2	2801	hgsc.bcm.edu;ucsc.edu	37	9	131019384	131019384	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	-	131019384	C	-	131019384	7	5	592	1	0	1	0	1	0	0	0	0	6559	739	26	0	41	0	GOLGA2	9	131019384	Frame_Shift_Del	DEL	C	TCGA-CZ-5986-01A-11D-1669-08	95300480	131019384	10194047	29	34810											
PKD2L1	9033	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	102089625	102089625	+	Splice_Site	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	102089625	C	T	102089625	5	4	592	1	0	0	0	0	0	0	1	0	11974	521	18	2	2245	2	PKD2L1	10	102089625	Splice_Site	SNP	C	TCGA-CZ-5986-01A-11D-1669-08		102089625	33445122	30	34811											
TRIM6	117854	hgsc.bcm.edu;ucsc.edu	37	11	5624941	5624943	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	-	5624943	GGA	-	5624941	7	5	592	1	0	1	0	1	0	0	0	0	16545	1335	47	0	489	0	TRIM6	11	5624941	In_Frame_Del	DEL	GGA	TCGA-CZ-5986-01A-11D-1669-08		5624941	129381575	31	34812											
CTR9	9646	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	10785039	10785039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	10785039	T	A	10785039	3	1	592	1	0	0	0	0	1	0	0	0	4026	1464	51	5	941	5	CTR9	11	10785039	Missense_Mutation	SNP	T	TCGA-CZ-5986-01A-11D-1669-08	5160098	10785039	124221477	32	34813											
CAT	847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	34478280	34478280	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	C	34478280	T	C	34478280	2	2	592	1	0	0	0	0	0	0	0	1	2688	1490	52	3		3	CAT	11	34478280	Silent	SNP	T	TCGA-CZ-5986-01A-11D-1669-08	23693241	34478280	100528236	33	34814											
PRDM11	56981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	45245952	45245952	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	45245952	G	A	45245952	2	1	592	1	0	0	0	0	0	0	0	1	12462	1335	47	2		2	PRDM11	11	45245952	Silent	SNP	G	TCGA-CZ-5986-01A-11D-1669-08	10767672	45245952	89760564	34	34815	456	2									
PRDM11	56981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	45245953	45245953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	45245953	G	A	45245953	3	1	592	1	0	0	0	0	1	0	0	0	12462	1175	41	2	1056	2	PRDM11	11	45245953	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08	1	45245953	89760563	35	34816	456	2									
ATM	472	hgsc.bcm.edu;ucsc.edu	37	11	108127063	108127063	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	-	108127063	C	-	108127063	7	5	592	1	0	1	0	1	0	0	0	0	1109	739	26	0	2296	0	ATM	11	108127063	Frame_Shift_Del	DEL	C	TCGA-CZ-5986-01A-11D-1669-08	62881110	108127063	26879453	36	34817											
OR10G4	390264	broad.mit.edu;hgsc.bcm.edu	37	11	123886863	123886863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	123886863	C	A	123886863	3	1	592	1	0	0	0	0	1	0	0	0	10908	535	19	4	584	4	OR10G4	11	123886863	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	15759800	123886863	11119653	37	34818											
NCAPD3	23310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	134079245	134079245	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	134079245	A	T	134079245	3	4	592	1	0	0	0	0	1	0	0	0	10213	69	3	5	3926	5	NCAPD3	11	134079245	Missense_Mutation	SNP	A	TCGA-CZ-5986-01A-11D-1669-08	10192382	134079245	927271	38	34819											
RERG	85004	broad.mit.edu;ucsc.edu	37	12	15262351	15262351	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	C	15262351	C	C	15262351	3	2	592	1	0	0	0	0	1	0	0	0	13245	72	3	5	310	5	RERG	12	15262351	Missense_Mutation	SNP	A	TCGA-CZ-5986-01A-11D-1669-08		15262351	118589544	39	34820											
SOX5	6660	broad.mit.edu;ucsc.edu	37	12	23818447	23818447	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	23818447	A	A	23818447	3	1	592	1	0	0	0	0	1	0	0	0	14967	1144	40	1	1475	1	SOX5	12	23818447	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08	8556096	23818447	110033448	40	34821											
OR6C6	283365	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55688731	55688731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	55688731	C	T	55688731	3	4	592	1	0	0	0	0	1	0	0	0	11201	710	25	2	660	2	OR6C6	12	55688731	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	31870284	55688731	78163164	41	34822											
ANKRD52	283373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56647514	56647514	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	56647514	A	T	56647514	3	4	592	1	0	0	0	0	1	0	0	0	678	333	12	5	2333	5	ANKRD52	12	56647514	Missense_Mutation	SNP	A	TCGA-CZ-5986-01A-11D-1669-08	958783	56647514	77204381	42	34823											
BTBD11	121551	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	107713793	107713793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	107713793	C	T	107713793	3	4	592	1	0	0	0	0	1	0	0	0	1541	893	31	1	1078	1	BTBD11	12	107713793	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	51066279	107713793	26138102	43	34824											
GOLGA3	2802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133351815	133351815	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	133351815	T	A	133351815	3	1	592	1	0	0	0	0	1	0	0	0	6561	1841	64	5	453	5	GOLGA3	12	133351815	Missense_Mutation	SNP	T	TCGA-CZ-5986-01A-11D-1669-08	25638022	133351815	500080	44	34825											
ATP11A	23250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	113508719	113508719	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	113508719	G	A	113508719	2	1	592	1	0	0	0	0	0	0	0	1	1119	1165	41	2		2	ATP11A	13	113508719	Silent	SNP	G	TCGA-CZ-5986-01A-11D-1669-08		113508719	1661159	45	34826											
JUB	0	hgsc.bcm.edu;ucsc.edu	37	14	23444255	23444260	+	In_Frame_Del	DEL	TTGCAA	TTGCAA	-	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	TTGCAA	TTGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	-	23444260	TTGCAA	-	23444255	7	5	592	1	0	1	0	1	0	0	0	0	7975	1725	60	0	334	0	JUB	14	23444255	In_Frame_Del	DEL	TTGCAA	TCGA-CZ-5986-01A-11D-1669-08		23444255	83905285	46	34827											
BBS4	585	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	73029249	73029249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	G	73029249	T	G	73029249	3	3	592	1	0	0	0	0	1	0	0	0	1339	1432	50	5	1453	5	BBS4	15	73029249	Missense_Mutation	SNP	T	TCGA-CZ-5986-01A-11D-1669-08		73029249	29502143	47	34828											
AP3B2	8120	broad.mit.edu;hgsc.bcm.edu	37	15	83349316	83349316	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	83349316	C	T	83349316	2	4	592	1	0	0	0	0	0	0	0	1	745	813	29	2		2	AP3B2	15	83349316	Silent	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	10320067	83349316	19182076	48	34829											
IQGAP1	8826	hgsc.bcm.edu;ucsc.edu	37	15	91035819	91035819	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	-	91035819	G	-	91035819	7	5	592	1	0	1	0	1	0	0	0	0	7821	1059	37	0	4642	0	IQGAP1	15	91035819	Frame_Shift_Del	DEL	G	TCGA-CZ-5986-01A-11D-1669-08	7686503	91035819	11495573	49	34830											
RSPRY1	89970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	57255221	57255221	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	C	57255221	G	C	57255221	3	2	592	1	0	0	0	0	1	0	0	0	13726	1319	46	4	1089	4	RSPRY1	16	57255221	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08		57255221	33099532	50	34831	457	2									
RSPRY1	89970	broad.mit.edu;ucsc.edu	37	16	57255223	57255223	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	57255223	T	T	57255223	3	4	592	1	0	0	0	0	1	0	0	0	13726	159	6	5	1091	5	RSPRY1	16	57255223	Missense_Mutation	SNP	A	TCGA-CZ-5986-01A-11D-1669-08	2	57255223	33099530	51	34832	457	2									
PHLPP2	23035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71683884	71683884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	C	71683884	A	C	71683884	3	2	592	1	0	0	0	0	1	0	0	0	11862	130	5	5	1094	5	PHLPP2	16	71683884	Missense_Mutation	SNP	A	TCGA-CZ-5986-01A-11D-1669-08	14428661	71683884	18670869	52	34833											
SEZ6	124925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27284413	27284413	+	Missense_Mutation	SNP	C	C	T	rs117736100	by1000genomes	TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	27284413	C	T	27284413	3	4	592	1	0	0	0	0	1	0	0	0	14155	768	27	1	574	1	SEZ6	17	27284413	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08		27284413	53910797	53	34834											
MED16	10025	broad.mit.edu;hgsc.bcm.edu	37	19	884992	884992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	884992	G	A	884992	3	1	592	1	0	0	0	0	1	0	0	0	9441	1174	41	2	1781	2	MED16	19	884992	Missense_Mutation	SNP	G	TCGA-CZ-5986-01A-11D-1669-08		884992	58243991	54	34835											
DNMT1	1786	broad.mit.edu	37	19	10246885	10246885	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	C	10246885	C	C	10246885	3	2	592	1	0	0	0	0	1	0	0	0	4677	1696	59	3	346	3	DNMT1	19	10246885	Missense_Mutation	SNP	T	TCGA-CZ-5986-01A-11D-1669-08	9361893	10246885	48882098	55	34836											
IL27RA	9466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14157046	14157046	+	Silent	SNP	C	C	G	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	G	14157046	C	G	14157046	2	3	592	1	0	0	0	0	0	0	0	1	7688	668	24	4		4	IL27RA	19	14157046	Silent	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	3910161	14157046	44971937	56	34837											
KIAA1683	80726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18377009	18377009	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	18377009	C	T	18377009	2	4	592	1	0	0	0	0	0	0	0	1	8258	726	26	2		2	KIAA1683	19	18377009	Silent	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	4219963	18377009	40751974	57	34838											
CEACAM5	1048	broad.mit.edu;hgsc.bcm.edu	37	19	42213711	42213711	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	42213711	C	A	42213711	2	1	592	1	0	0	0	0	0	0	0	1	3197	610	22	4		4	CEACAM5	19	42213711	Silent	SNP	C	TCGA-CZ-5986-01A-11D-1669-08	23836702	42213711	16915272	58	34839											
GPR4	2828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	46094945	46094945	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	A	46094945	G	A	46094945	2	1	592	1	0	0	0	0	0	0	0	1	6701	1310	46	2		2	GPR4	19	46094945	Silent	SNP	G	TCGA-CZ-5986-01A-11D-1669-08	3881234	46094945	13034038	59	34840											
NLRP4	147945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56363605	56363605	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	G	56363605	A	G	56363605	2	3	592	1	0	0	0	0	0	0	0	1	10486	69	3	3		3	NLRP4	19	56363605	Silent	SNP	A	TCGA-CZ-5986-01A-11D-1669-08	10268660	56363605	2765378	60	34841											
GGT7	2686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33447323	33447323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5986-01A-11D-1669-08	TCGA-CZ-5986-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0abded91-5a5f-4923-bcf0-7fdda64ae232	a6338f94-6519-4637-9948-0990b8e3598a	T	33447323	C	T	33447323	3	4	592	1	0	0	0	0	1	0	0	0	6371	507	18	2	1087	2	GGT7	20	33447323	Missense_Mutation	SNP	C	TCGA-CZ-5986-01A-11D-1669-08		33447323	29578197	61	34842											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11217322	11217322	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	11217322	T	A	11217322	3	1	593	1	0	0	0	0	1	0	0	0	9961	1722	60	5	3409	5	MTOR	1	11217322	Missense_Mutation	SNP	T	TCGA-CZ-5987-01A-11D-1669-08		11217322	238033299	1	34843											
USP48	84196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	22079531	22079531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	22079531	G	T	22079531	3	4	593	1	0	0	0	0	1	0	0	0	17091	1348	47	4	2717	4	USP48	1	22079531	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	10862209	22079531	227171090	2	34844											
CA14	23632	broad.mit.edu	37	1	150234002	150234002	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	150234002	A	A	150234002	3	1	593	1	0	0	0	0	1	0	0	0	2517	507	18	4	231	4	CA14	1	150234002	Missense_Mutation	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	128154471	150234002	99016619	3	34845											
CADM3	57863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	159163732	159163732	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	G	159163732	T	G	159163732	3	3	593	1	0	0	0	0	1	0	0	0	2570	1725	60	5	717	5	CADM3	1	159163732	Missense_Mutation	SNP	T	TCGA-CZ-5987-01A-11D-1669-08	8929730	159163732	90086889	4	34846											
ATP1A2	477	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160100072	160100072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	160100072	C	T	160100072	3	4	593	1	0	0	0	0	1	0	0	0	1129	768	27	1	1688	1	ATP1A2	1	160100072	Missense_Mutation	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	936340	160100072	89150549	5	34847											
SH2D1B	117157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	162368719	162368719	+	Silent	SNP	T	T	G	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	G	162368719	T	G	162368719	2	3	593	1	0	0	0	0	0	0	0	1	14244	1451	51	5		5	SH2D1B	1	162368719	Silent	SNP	T	TCGA-CZ-5987-01A-11D-1669-08	2268647	162368719	86881902	6	34848											
KIAA1614	57710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	180910371	180910371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	180910371	C	T	180910371	3	4	593	1	0	0	0	0	1	0	0	0	8255	739	26	2	3135	2	KIAA1614	1	180910371	Missense_Mutation	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	18541652	180910371	68340250	7	34849											
C1orf26	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	185143987	185143987	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	185143987	C	T	185143987	2	4	593	1	0	0	0	0	0	0	0	1	2037	845	30	2		2	C1orf26	1	185143987	Silent	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	4233616	185143987	64106634	8	34850											
C2orf29	55571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	101885790	101885790	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	101885790	G	C	101885790	3	2	593	1	0	0	0	0	1	0	0	0	2163	1000	35	4	1474	4	C2orf29	2	101885790	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08		101885790	141313583	9	34851											
BAZ2B	29994	broad.mit.edu;hgsc.bcm.edu	37	2	160289320	160289320	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	G	160289320	T	G	160289320	3	3	593	1	0	0	0	0	1	0	0	0	1332	1606	56	5	4774	5	BAZ2B	2	160289320	Missense_Mutation	SNP	T	TCGA-CZ-5987-01A-11D-1669-08	58403530	160289320	82910053	10	34852											
AGPS	8540	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	178326666	178326666	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	178326666	G	C	178326666	3	2	593	1	0	0	0	0	1	0	0	0	394	1175	41	4	950	4	AGPS	2	178326666	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	18037346	178326666	64872707	11	34853											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10191570	10191570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	10191570	T	C	10191570	3	2	593	1	0	0	0	0	1	0	0	0	17174	1580	55	3	573	3	VHL	3	10191570	Missense_Mutation	SNP	T	TCGA-CZ-5987-01A-11D-1669-08		10191570	187830860	12	34854											
PDCD6IP	10015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33855050	33855050	+	Splice_Site	SNP	G	G	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	33855050	G	A	33855050	5	1	593	1	0	0	0	0	0	0	1	0	11631	956	33	2	274	2	PDCD6IP	3	33855050	Splice_Site	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	23663480	33855050	164167380	13	34855											
SUCLG2	8801	broad.mit.edu;hgsc.bcm.edu	37	3	67578587	67578587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	67578587	T	C	67578587	3	2	593	1	0	0	0	0	1	0	0	0	15377	1812	63	3	1088	3	SUCLG2	3	67578587	Missense_Mutation	SNP	T	TCGA-CZ-5987-01A-11D-1669-08	33723537	67578587	130443843	14	34856											
VPS8	23355	broad.mit.edu;ucsc.edu	37	3	184633149	184633149	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	184633149	A	A	184633149	3	1	593	1	0	0	0	0	1	0	0	0	17230	1291	45	2	2371	2	VPS8	3	184633149	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	117054562	184633149	13389281	15	34857											
DCLK2	166614	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	151169528	151169528	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	151169528	C	A	151169528	2	1	593	1	0	0	0	0	0	0	0	1	4294	668	24	4		4	DCLK2	4	151169528	Silent	SNP	C	TCGA-CZ-5987-01A-11D-1669-08		151169528	39984748	16	34858											
OSMR	9180	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	38921794	38921794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	G	38921794	A	G	38921794	3	3	593	1	0	0	0	0	1	0	0	0	11299	449	16	3	1743	3	OSMR	5	38921794	Missense_Mutation	SNP	A	TCGA-CZ-5987-01A-11D-1669-08		38921794	141993466	17	34859											
RPS18	6222	broad.mit.edu;hgsc.bcm.edu	37	6	33240437	33240437	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	33240437	T	C	33240437	2	2	593	1	0	0	0	0	0	0	0	1	13641	1829	64	3		3	RPS18	6	33240437	Silent	SNP	T	TCGA-CZ-5987-01A-11D-1669-08		33240437	137874630	18	34860											
ABCC10	89845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43400901	43400901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	43400901	G	C	43400901	3	2	593	1	0	0	0	0	1	0	0	0	50	1319	46	4	1056	4	ABCC10	6	43400901	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	10160464	43400901	127714166	19	34861											
GRM3	2913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	86468364	86468364	+	Missense_Mutation	SNP	C	C	A	rs17856664	alternate_allele	TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	86468364	C	A	86468364	3	1	593	1	0	0	0	0	1	0	0	0	6805	623	22	4	1544	4	GRM3	7	86468364	Missense_Mutation	SNP	C	TCGA-CZ-5987-01A-11D-1669-08		86468364	72670299	20	34862											
HEPACAM2	253012	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92844896	92844896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	G	92844896	A	G	92844896	3	3	593	1	0	0	0	0	1	0	0	0	7060	420	15	3	887	3	HEPACAM2	7	92844896	Missense_Mutation	SNP	A	TCGA-CZ-5987-01A-11D-1669-08	6376532	92844896	66293767	21	34863											
AASS	10157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	121719654	121719654	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	G	121719654	T	G	121719654	3	3	593	1	0	0	0	0	1	0	0	0	24	1783	62	5	403	5	AASS	7	121719654	Missense_Mutation	SNP	T	TCGA-CZ-5987-01A-11D-1669-08	28874758	121719654	37419009	22	34864											
PRDM14	63978	broad.mit.edu	37	8	70982083	70982083	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	70982083	A	A	70982083	3	1	593	1	0	0	0	0	1	0	0	0	12465	1115	39	1	1730	1	PRDM14	8	70982083	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08		70982083	75381939	23	34865											
LRRCC1	85444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	86048083	86048083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	G	86048083	A	G	86048083	3	3	593	1	0	0	0	0	1	0	0	0	9033	410	15	3	2268	3	LRRCC1	8	86048083	Missense_Mutation	SNP	A	TCGA-CZ-5987-01A-11D-1669-08	15066000	86048083	60315939	24	34866											
DAPK1	1612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	90311963	90311963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	90311963	G	T	90311963	3	4	593	1	0	0	0	0	1	0	0	0	4237	1377	48	4	2537	4	DAPK1	9	90311963	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08		90311963	50901468	25	34867											
DENND1A	57706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	126143757	126143757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	126143757	G	T	126143757	3	4	593	1	0	0	0	0	1	0	0	0	4428	1348	47	4	49	4	DENND1A	9	126143757	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	35831794	126143757	15069674	26	34868											
TUBAL3	79861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	5435755	5435755	+	Missense_Mutation	SNP	T	T	C	rs181652174	by1000genomes;alternate_allele	TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	5435755	T	C	5435755	3	2	593	1	0	0	0	0	1	0	0	0	16763	1725	60	3	278	3	TUBAL3	10	5435755	Missense_Mutation	SNP	T	TCGA-CZ-5987-01A-11D-1669-08		5435755	130098992	27	34869											
UBE2D1	7321	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	60128479	60128479	+	Splice_Site	SNP	G	G	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	60128479	G	T	60128479	5	4	593	1	0	0	0	0	0	0	1	0	16860	956	33	4	424	4	UBE2D1	10	60128479	Splice_Site	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	54692724	60128479	75406268	28	34870											
PLCE1	51196	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96058297	96058298	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	96058298	-	C	96058297	7	5	593	1	0	1	1	0	0	0	0	0	12041	275	10	0	5705	0	PLCE1	10	96058297	Frame_Shift_Ins	INS	-	TCGA-CZ-5987-01A-11D-1669-08	35929818	96058297	39476450	29	34871											
FGFR2	2263	broad.mit.edu;hgsc.bcm.edu	37	10	123353230	123353230	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	123353230	C	T	123353230	2	4	593	1	0	0	0	0	0	0	0	1	5873	796	28	2		2	FGFR2	10	123353230	Silent	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	27294933	123353230	12181517	30	34872											
CATSPER1	117144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	65793079	65793079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	65793079	G	T	65793079	3	4	593	1	0	0	0	0	1	0	0	0	2689	1087	38	4	1618	4	CATSPER1	11	65793079	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08		65793079	69213437	31	34873											
ACSM4	341392	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7469736	7469736	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	7469736	C	T	7469736	2	4	593	1	0	0	0	0	0	0	0	1	186	883	31	1		1	ACSM4	12	7469736	Silent	SNP	C	TCGA-CZ-5987-01A-11D-1669-08		7469736	126382159	32	34874											
PZP	5858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9322148	9322148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	9322148	G	A	9322148	3	1	593	1	0	0	0	0	1	0	0	0	12882	1174	41	2	2653	2	PZP	12	9322148	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	1852412	9322148	124529747	33	34875											
C12orf10	60314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53693593	53693593	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	53693593	C	T	53693593	2	4	593	1	0	0	0	0	0	0	0	1	1676	697	25	2		2	C12orf10	12	53693593	Silent	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	44371445	53693593	80158302	34	34876											
ACACB	32	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	109577276	109577276	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	109577276	C	A	109577276	2	1	593	1	0	0	0	0	0	0	0	1	107	903	32	4		4	ACACB	12	109577276	Silent	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	55883683	109577276	24274619	35	34877											
FAM48A	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	37593524	37593524	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	-	37593524	A	-	37593524	7	5	593	1	0	1	0	1	0	0	0	0	5579	127	5	0	532	0	FAM48A	13	37593524	Frame_Shift_Del	DEL	A	TCGA-CZ-5987-01A-11D-1669-08		37593524	77576354	36	34878											
RYR3	6263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	34129174	34129174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	34129174	T	C	34129174	3	2	593	1	0	0	0	0	1	0	0	0	13783	1580	55	3	11986	3	RYR3	15	34129174	Missense_Mutation	SNP	T	TCGA-CZ-5987-01A-11D-1669-08		34129174	68402218	37	34879											
RYR3	6263	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	34130917	34130917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	34130917	G	A	34130917	3	1	593	1	0	0	0	0	1	0	0	0	13783	1290	45	2	13090	2	RYR3	15	34130917	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	1743	34130917	68400475	38	34880											
IRX5	10265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	54966436	54966436	+	Silent	SNP	C	C	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	54966436	C	A	54966436	2	1	593	1	0	0	0	0	0	0	0	1	7854	697	25	4		4	IRX5	16	54966436	Silent	SNP	C	TCGA-CZ-5987-01A-11D-1669-08		54966436	35388317	39	34881											
CPNE7	27132	broad.mit.edu	37	16	89657660	89657660	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	-	89657660	-	-	89657660	7	5	593	1	0	1	0	1	0	0	0	0	3819	247	9	0	1577	0	CPNE7	16	89657660	Frame_Shift_Del	DEL	A	TCGA-CZ-5987-01A-11D-1669-08	34691224	89657660	697093	40	34882											
DNAH2	146754	broad.mit.edu;ucsc.edu	37	17	7721647	7721647	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	7721647	T	T	7721647	3	4	593	1	0	0	0	0	1	0	0	0	4604	768	27	1	10675	1	DNAH2	17	7721647	Missense_Mutation	SNP	C	TCGA-CZ-5987-01A-11D-1669-08		7721647	73473563	41	34883											
SSH2	85464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	27959837	27959837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	27959837	T	C	27959837	3	2	593	1	0	0	0	0	1	0	0	0	15197	1580	55	3	1981	3	SSH2	17	27959837	Missense_Mutation	SNP	T	TCGA-CZ-5987-01A-11D-1669-08	20238190	27959837	53235373	42	34884											
RAPGEFL1	51195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38340547	38340547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	C	38340547	G	C	38340547	3	2	593	1	0	0	0	0	1	0	0	0	13062	1339	47	4	65	4	RAPGEFL1	17	38340547	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	10380710	38340547	42854663	43	34885											
KRT37	8688	broad.mit.edu;hgsc.bcm.edu	37	17	39579096	39579096	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	39579096	G	A	39579096	2	1	593	1	0	0	0	0	0	0	0	1	8481	1103	39	1		1	KRT37	17	39579096	Silent	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	1238549	39579096	41616114	44	34886											
PRKCA	5578	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	64731699	64731699	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	64731699	C	T	64731699	2	4	593	1	0	0	0	0	0	0	0	1	12517	718	25	2		2	PRKCA	17	64731699	Silent	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	25152603	64731699	16463511	45	34887											
KIF19	124602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	72350319	72350319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	72350319	C	A	72350319	3	1	593	1	0	0	0	0	1	0	0	0	8289	565	20	4	2397	4	KIF19	17	72350319	Missense_Mutation	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	7618620	72350319	8844891	46	34888											
CDH7	1005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	63477170	63477170	+	Silent	SNP	C	C	T	rs143932384		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	63477170	C	T	63477170	2	4	593	1	0	0	0	0	0	0	0	1	3117	535	19	1		1	CDH7	18	63477170	Silent	SNP	C	TCGA-CZ-5987-01A-11D-1669-08		63477170	14600078	47	34889											
REXO1	57455	hgsc.bcm.edu	37	19	1825928	1825930	+	In_Frame_Del	DEL	CTC	CTC	-	rs149465929	bycluster;by1000genomes	TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	-	1825930	CTC	-	1825928	7	5	593	1	0	1	0	1	0	0	0	0	13254	912	32	0	1795	0	REXO1	19	1825928	In_Frame_Del	DEL	CTC	TCGA-CZ-5987-01A-11D-1669-08		1825928	57303055	48	34890											
ZNF233	353355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44777290	44777290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	G	44777290	A	G	44777290	3	3	593	1	0	0	0	0	1	0	0	0	17798	352	13	3	491	3	ZNF233	19	44777290	Missense_Mutation	SNP	A	TCGA-CZ-5987-01A-11D-1669-08	42951362	44777290	14351693	49	34891											
TRAPPC6A	79090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	45666460	45666460	+	Missense_Mutation	SNP	G	G	A	rs146982912		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	45666460	G	A	45666460	3	1	593	1	0	0	0	0	1	0	0	0	16475	1116	39	1	13	1	TRAPPC6A	19	45666460	Missense_Mutation	SNP	G	TCGA-CZ-5987-01A-11D-1669-08	889170	45666460	13462523	50	34892											
ESF1	51575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	13695697	13695697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	13695697	C	T	13695697	3	4	593	1	0	0	0	0	1	0	0	0	5253	739	26	2	179	2	ESF1	20	13695697	Missense_Mutation	SNP	C	TCGA-CZ-5987-01A-11D-1669-08		13695697	49329823	51	34893											
SLA2	84174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	35261962	35261962	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	-	35261962	C	-	35261962	7	5	593	1	0	1	0	1	0	0	0	0	14377	739	26	0	543	0	SLA2	20	35261962	Frame_Shift_Del	DEL	C	TCGA-CZ-5987-01A-11D-1669-08	21566265	35261962	27763558	52	34894											
CDH22	64405	broad.mit.edu;hgsc.bcm.edu	37	20	44806600	44806600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	44806600	C	T	44806600	3	4	593	1	0	0	0	0	1	0	0	0	3109	536	19	1	594	1	CDH22	20	44806600	Missense_Mutation	SNP	C	TCGA-CZ-5987-01A-11D-1669-08	9544638	44806600	18218920	53	34895											
ARFGEF2	10564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	47569395	47569395	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	T	47569395	A	T	47569395	3	4	593	1	0	0	0	0	1	0	0	0	853	217	8	5	595	5	ARFGEF2	20	47569395	Missense_Mutation	SNP	A	TCGA-CZ-5987-01A-11D-1669-08	2762795	47569395	15456125	54	34896											
THOC5	8563	hgsc.bcm.edu;ucsc.edu	37	22	29914993	29914997	+	Frame_Shift_Del	DEL	ACCTA	ACCTA	-	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	ACCTA	ACCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	-	29914997	ACCTA	-	29914993	7	5	593	1	0	1	0	1	0	0	0	0	15880	405	14	0	584	0	THOC5	22	29914993	Frame_Shift_Del	DEL	ACCTA	TCGA-CZ-5987-01A-11D-1669-08		29914993	21389573	55	34897											
TEX11	56159	broad.mit.edu	37	X	69871299	69871299	+	Splice_Site	SNP	C	A	A	novel		TCGA-CZ-5987-01A-11D-1669-08	TCGA-CZ-5987-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84a1a8d2-54c6-4771-9092-27c5f7fc4e5c	a36b2e09-a18e-4b92-ba23-cb501698161c	A	69871299	A	A	69871299	5	1	593	1	0	0	0	0	0	0	1	0	15786	521	18	4	1349	4	TEX11	23	69871299	Splice_Site	SNP	C	TCGA-CZ-5987-01A-11D-1669-08		69871299	85399261	56	34898											
KIAA0754	643314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	39877862	39877862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	C	39877862	A	C	39877862	3	2	594	1	0	0	0	0	1	0	0	0	8199	101	4	5	1927	5	KIAA0754	1	39877862	Missense_Mutation	SNP	A	TCGA-CZ-5988-01A-11D-1669-08		39877862	209372759	1	34899											
BCAR3	8412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	94032907	94032907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	C	94032907	T	C	94032907	3	2	594	1	0	0	0	0	1	0	0	0	1349	1464	51	3	257	3	BCAR3	1	94032907	Missense_Mutation	SNP	T	TCGA-CZ-5988-01A-11D-1669-08	54155045	94032907	155217714	2	34900											
SEMA6C	10500	broad.mit.edu;hgsc.bcm.edu	37	1	151105698	151105698	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	151105698	C	T	151105698	2	4	594	1	0	0	0	0	0	0	0	1	14054	755	27	1		1	SEMA6C	1	151105698	Silent	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	57072791	151105698	98144923	3	34901											
ADAR	103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154574192	154574192	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	154574192	T	A	154574192	3	1	594	1	0	0	0	0	1	0	0	0	281	1493	52	5	2810	5	ADAR	1	154574192	Missense_Mutation	SNP	T	TCGA-CZ-5988-01A-11D-1669-08	3468494	154574192	94676429	4	34902											
OR6N1	128372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	158735823	158735823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	158735823	G	A	158735823	3	1	594	1	0	0	0	0	1	0	0	0	11213	1174	41	2	291	2	OR6N1	1	158735823	Missense_Mutation	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	4161631	158735823	90514798	5	34903											
OR2G2	81470	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247752396	247752396	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	247752396	C	T	247752396	2	4	594	1	0	0	0	0	0	0	0	1	11005	912	32	2		2	OR2G2	1	247752396	Silent	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	89016573	247752396	1498225	6	34904											
ASB3	51130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	53955964	53955964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	G	53955964	T	G	53955964	3	3	594	1	0	0	0	0	1	0	0	0	1024	1490	52	5	1091	5	ASB3	2	53955964	Missense_Mutation	SNP	T	TCGA-CZ-5988-01A-11D-1669-08		53955964	189243409	7	34905											
SPTBN1	6711	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	54870209	54870209	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	C	54870209	T	C	54870209	2	2	594	1	0	0	0	0	0	0	0	1	15131	1432	50	3		3	SPTBN1	2	54870209	Silent	SNP	T	TCGA-CZ-5988-01A-11D-1669-08	914245	54870209	188329164	8	34906											
CNNM3	26505	hgsc.bcm.edu;ucsc.edu	37	2	97492576	97492576	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	-	97492576	C	-	97492576	7	5	594	1	0	1	0	1	0	0	0	0	3616	507	18	0	1386	0	CNNM3	2	97492576	Frame_Shift_Del	DEL	C	TCGA-CZ-5988-01A-11D-1669-08	42622367	97492576	145706797	9	34907											
SULT1C3	442038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	108872055	108872055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	108872055	G	A	108872055	3	1	594	1	0	0	0	0	1	0	0	0	15390	1174	41	2	441	2	SULT1C3	2	108872055	Missense_Mutation	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	11379479	108872055	134327318	10	34908											
ATF2	1386	broad.mit.edu;hgsc.bcm.edu	37	2	175957974	175957974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	C	175957974	G	C	175957974	3	2	594	1	0	0	0	0	1	0	0	0	1080	1174	41	4	529	4	ATF2	2	175957974	Missense_Mutation	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	67085919	175957974	67241399	11	34909											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179433486	179433486	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	179433486	G	A	179433486	2	1	594	1	0	0	0	0	0	0	0	1	16747	1335	47	2		2	TTN	2	179433486	Silent	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	3475512	179433486	63765887	12	34910											
CCDC54	84692	hgsc.bcm.edu;ucsc.edu	37	3	107096611	107096612	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	TA	107096612	-	TA	107096611	7	5	594	1	0	1	1	0	0	0	0	0	2826	1722	60	0	179	0	CCDC54	3	107096611	Frame_Shift_Ins	INS	-	TCGA-CZ-5988-01A-11D-1669-08		107096611	90925819	13	34911											
COL6A6	131873	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	130293121	130293121	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	G	130293121	C	G	130293121	3	3	594	1	0	0	0	0	1	0	0	0	3705	478	17	4	3325	4	COL6A6	3	130293121	Missense_Mutation	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	23196510	130293121	67729309	14	34912											
NCAPG	64151	broad.mit.edu;hgsc.bcm.edu	37	4	17819616	17819616	+	Silent	SNP	C	C	G	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	G	17819616	C	G	17819616	2	3	594	1	0	0	0	0	0	0	0	1	10214	610	22	4		4	NCAPG	4	17819616	Silent	SNP	C	TCGA-CZ-5988-01A-11D-1669-08		17819616	173334660	15	34913											
POLR2B	5431	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	57860916	57860916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	G	57860916	A	G	57860916	3	3	594	1	0	0	0	0	1	0	0	0	12222	101	4	3	478	3	POLR2B	4	57860916	Missense_Mutation	SNP	A	TCGA-CZ-5988-01A-11D-1669-08	40041300	57860916	133293360	16	34914											
EXOSC9	5393	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	122722621	122722621	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	G	122722621	A	G	122722621	2	3	594	1	0	0	0	0	0	0	0	1	5323	378	14	3		3	EXOSC9	4	122722621	Silent	SNP	A	TCGA-CZ-5988-01A-11D-1669-08	64861705	122722621	68431655	17	34915											
KLHL2	11275	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	166239048	166239048	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	-	166239048	A	-	166239048	7	5	594	1	0	1	0	1	0	0	0	0	8381	407	15	0	1776	0	KLHL2	4	166239048	Frame_Shift_Del	DEL	A	TCGA-CZ-5988-01A-11D-1669-08	43516427	166239048	24915228	18	34916											
FBXO4	26272	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	41934379	41934379	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	41934379	C	T	41934379	2	4	594	1	0	0	0	0	0	0	0	1	5755	825	29	2		2	FBXO4	5	41934379	Silent	SNP	C	TCGA-CZ-5988-01A-11D-1669-08		41934379	138980881	19	34917											
MAST4	375449	broad.mit.edu	37	5	66438350	66438350	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	66438350	T	T	66438350	3	4	594	1	0	0	0	0	1	0	0	0	9334	179	7	5	2931	5	MAST4	5	66438350	Missense_Mutation	SNP	A	TCGA-CZ-5988-01A-11D-1669-08	24503971	66438350	114476910	20	34918											
KIAA1244	57221	broad.mit.edu	37	6	138628466	138628466	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	138628466	T	T	138628466	3	4	594	1	0	0	0	0	1	0	0	0	8224	739	26	2	3995	2	KIAA1244	6	138628466	Missense_Mutation	SNP	C	TCGA-CZ-5988-01A-11D-1669-08		138628466	32486601	21	34919											
TBP	6908	hgsc.bcm.edu	37	6	170871085	170871085	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	170871085	G	A	170871085	2	1	594	1	0	0	0	0	0	0	0	1	15656	962	34	2		2	TBP	6	170871085	Silent	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	32242619	170871085	243982	22	34920											
PON3	5446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	95019500	95019500	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	95019500	T	A	95019500	3	1	594	1	0	0	0	0	1	0	0	0	12257	1435	50	5	925	5	PON3	7	95019500	Missense_Mutation	SNP	T	TCGA-CZ-5988-01A-11D-1669-08		95019500	64119163	23	34921											
SLC26A5	375611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	103048401	103048401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	G	103048401	A	G	103048401	3	3	594	1	0	0	0	0	1	0	0	0	14533	420	15	3	1542	3	SLC26A5	7	103048401	Missense_Mutation	SNP	A	TCGA-CZ-5988-01A-11D-1669-08	8028901	103048401	56090262	24	34922											
PPP1R3A	5506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	113558913	113558913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	113558913	C	A	113558913	3	1	594	1	0	0	0	0	1	0	0	0	12381	826	29	4	3245	4	PPP1R3A	7	113558913	Missense_Mutation	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	10510512	113558913	45579750	25	34923											
NOM1	64434	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	156752728	156752728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	156752728	G	T	156752728	3	4	594	1	0	0	0	0	1	0	0	0	10537	942	33	4	1506	4	NOM1	7	156752728	Missense_Mutation	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	43193815	156752728	2385935	26	34924											
TEX15	56154	broad.mit.edu;ucsc.edu	37	8	30700538	30700538	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	30700538	A	A	30700538	3	1	594	1	0	0	0	0	1	0	0	0	15791	1319	46	2	2389	2	TEX15	8	30700538	Missense_Mutation	SNP	G	TCGA-CZ-5988-01A-11D-1669-08		30700538	115663484	27	34925											
PCSK5	5125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	78774010	78774010	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	78774010	C	T	78774010	2	4	594	1	0	0	0	0	0	0	0	1	11610	816	29	2		2	PCSK5	9	78774010	Silent	SNP	C	TCGA-CZ-5988-01A-11D-1669-08		78774010	62439421	28	34926											
OR52J3	119679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	5068193	5068193	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	C	5068193	T	C	5068193	2	2	594	1	0	0	0	0	0	0	0	1	11129	1742	61	3		3	OR52J3	11	5068193	Silent	SNP	T	TCGA-CZ-5988-01A-11D-1669-08		5068193	129938323	29	34927											
OR2AG2	338755	hgsc.bcm.edu;ucsc.edu	37	11	6789789	6789789	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	-	6789789	T	-	6789789	7	5	594	1	0	1	0	1	0	0	0	0	10992	1667	58	0	554	0	OR2AG2	11	6789789	Frame_Shift_Del	DEL	T	TCGA-CZ-5988-01A-11D-1669-08	1721596	6789789	128216727	30	34928											
ATG2A	23130	broad.mit.edu;hgsc.bcm.edu	37	11	64681821	64681821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	64681821	C	T	64681821	3	4	594	1	0	0	0	0	1	0	0	0	1093	768	27	1	5653	1	ATG2A	11	64681821	Missense_Mutation	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	57892032	64681821	70324695	31	34929											
CEP164	22897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	117263006	117263006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	117263006	C	T	117263006	3	4	594	1	0	0	0	0	1	0	0	0	3251	739	26	2	2410	2	CEP164	11	117263006	Missense_Mutation	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	52581185	117263006	17743510	32	34930											
SLITRK5	26050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	88329824	88329824	+	Silent	SNP	A	A	G	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	G	88329824	A	G	88329824	2	3	594	1	0	0	0	0	0	0	0	1	14759	146	6	3		3	SLITRK5	13	88329824	Silent	SNP	A	TCGA-CZ-5988-01A-11D-1669-08		88329824	26840054	33	34931											
PTPN21	11099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	88983493	88983493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	C	88983493	T	C	88983493	3	2	594	1	0	0	0	0	1	0	0	0	12799	1406	49	3	3299	3	PTPN21	14	88983493	Missense_Mutation	SNP	T	TCGA-CZ-5988-01A-11D-1669-08		88983493	18366047	34	34932											
CHD9	80205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	53358659	53358659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	C	53358659	T	C	53358659	3	2	594	1	0	0	0	0	1	0	0	0	3334	1493	52	3	8648	3	CHD9	16	53358659	Missense_Mutation	SNP	T	TCGA-CZ-5988-01A-11D-1669-08		53358659	36996094	35	34933											
SMTNL2	342527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4500589	4500589	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	C	4500589	G	C	4500589	3	2	594	1	0	0	0	0	1	0	0	0	14829	933	33	4	1256	4	SMTNL2	17	4500589	Missense_Mutation	SNP	G	TCGA-CZ-5988-01A-11D-1669-08		4500589	76694621	36	34934											
ADORA2B	136	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	15848766	15848766	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	15848766	C	T	15848766	2	4	594	1	0	0	0	0	0	0	0	1	328	738	26	2		2	ADORA2B	17	15848766	Silent	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	11348177	15848766	65346444	37	34935											
OR1I1	126370	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	15198107	15198107	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	15198107	C	T	15198107	2	4	594	1	0	0	0	0	0	0	0	1	10965	639	23	1		1	OR1I1	19	15198107	Silent	SNP	C	TCGA-CZ-5988-01A-11D-1669-08		15198107	43930876	38	34936											
NR2F6	2063	broad.mit.edu;hgsc.bcm.edu	37	19	17346354	17346354	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	17346354	G	A	17346354	2	1	594	1	0	0	0	0	0	0	0	1	10636	1020	36	2		2	NR2F6	19	17346354	Silent	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	2148247	17346354	41782629	39	34937											
FFAR2	2867	broad.mit.edu;ucsc.edu	37	19	35941423	35941423	+	Silent	SNP	C	T	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	35941423	T	T	35941423	2	4	594	1	0	0	0	0	0	0	0	1	5835	506	18	2		2	FFAR2	19	35941423	Silent	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	18595069	35941423	23187560	40	34938											
IZUMO1	284359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49246716	49246716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	49246716	G	T	49246716	3	4	594	1	0	0	0	0	1	0	0	0	7940	1174	41	4	587	4	IZUMO1	19	49246716	Missense_Mutation	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	13305293	49246716	9882267	41	34939											
CD33	945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	51728801	51728801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	51728801	G	T	51728801	3	4	594	1	0	0	0	0	1	0	0	0	3007	942	33	4	371	4	CD33	19	51728801	Missense_Mutation	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	2482085	51728801	7400182	42	34940											
C20orf112	140688	broad.mit.edu;hgsc.bcm.edu	37	20	31035602	31035602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	C	31035602	T	C	31035602	3	2	594	1	0	0	0	0	1	0	0	0	2083	1464	51	3	206	3	C20orf112	20	31035602	Missense_Mutation	SNP	T	TCGA-CZ-5988-01A-11D-1669-08		31035602	31989918	43	34941											
ZNFX1	57169	broad.mit.edu;hgsc.bcm.edu	37	20	47874193	47874193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	G	47874193	C	G	47874193	3	3	594	1	0	0	0	0	1	0	0	0	18217	922	32	4	3359	4	ZNFX1	20	47874193	Missense_Mutation	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	16838591	47874193	15151327	44	34942											
PRIC285	0	broad.mit.edu;hgsc.bcm.edu	37	20	62193088	62193088	+	Silent	SNP	C	C	G	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	G	62193088	C	G	62193088	2	3	594	1	0	0	0	0	0	0	0	1	12495	813	29	4		4	PRIC285	20	62193088	Silent	SNP	C	TCGA-CZ-5988-01A-11D-1669-08	14318895	62193088	832432	45	34943											
SON	6651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34924766	34924766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	34924766	C	A	34924766	3	1	594	1	0	0	0	0	1	0	0	0	14939	623	22	4	3239	4	SON	21	34924766	Missense_Mutation	SNP	C	TCGA-CZ-5988-01A-11D-1669-08		34924766	13205129	46	34944											
SUSD2	56241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	24579610	24579610	+	Silent	SNP	G	G	T	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	T	24579610	G	T	24579610	2	4	594	1	0	0	0	0	0	0	0	1	15420	1335	47	4		4	SUSD2	22	24579610	Silent	SNP	G	TCGA-CZ-5988-01A-11D-1669-08		24579610	26724956	47	34945											
CNKSR2	22866	broad.mit.edu	37	X	21450761	21450761	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	21450761	A	A	21450761	3	1	594	1	0	0	0	0	1	0	0	0	3609	507	18	4	270	4	CNKSR2	23	21450761	Missense_Mutation	SNP	C	TCGA-CZ-5988-01A-11D-1669-08		21450761	133819799	48	34946											
MTMR8	55613	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	63488824	63488824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	A	63488824	G	A	63488824	3	1	594	1	0	0	0	0	1	0	0	0	9956	942	33	2	410	2	MTMR8	23	63488824	Missense_Mutation	SNP	G	TCGA-CZ-5988-01A-11D-1669-08	42038063	63488824	91781736	49	34947											
RBMX	27316	hgsc.bcm.edu	37	X	135956571	135956572	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-CZ-5988-01A-11D-1669-08	TCGA-CZ-5988-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	668172b3-1e6f-4362-8432-3651925b86a6	6cd200bc-7468-4a2f-aab4-51e803c2418b	GG	135956572	-	GG	135956571	7	5	594	1	0	1	1	0	0	0	0	0	13164	1451	51	0	328	0	RBMX	23	135956571	Frame_Shift_Ins	INS	-	TCGA-CZ-5988-01A-11D-1669-08	72467747	135956571	19313989	50	34948											
ATG4C	84938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	63300488	63300488	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	G	63300488	T	G	63300488	3	3	595	1	0	0	0	0	1	0	0	0	1098	1841	64	5	1084	5	ATG4C	1	63300488	Missense_Mutation	SNP	T	TCGA-CZ-5989-01A-11D-1669-08		63300488	185950133	1	34949											
OR2G2	81470	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247752195	247752195	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	C	247752195	T	C	247752195	2	2	595	1	0	0	0	0	0	0	0	1	11005	1432	50	3		3	OR2G2	1	247752195	Silent	SNP	T	TCGA-CZ-5989-01A-11D-1669-08	184451707	247752195	1498426	2	34950											
FBLN7	129804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	112944841	112944841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	112944841	G	A	112944841	3	1	595	1	0	0	0	0	1	0	0	0	5708	971	34	2	1108	2	FBLN7	2	112944841	Missense_Mutation	SNP	G	TCGA-CZ-5989-01A-11D-1669-08		112944841	130254532	3	34951											
VHL	7428	hgsc.bcm.edu;ucsc.edu	37	3	10188202	10188212	+	Frame_Shift_Del	DEL	CCTTTGGCTCT	CCTTTGGCTCT	-	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	CCTTTGGCTCT	CCTTTGGCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	-	10188212	CCTTTGGCTCT	-	10188202	7	5	595	1	0	1	0	1	0	0	0	0	17174	506	18	0	351	0	VHL	3	10188202	Frame_Shift_Del	DEL	CCTTTGGCTCT	TCGA-CZ-5989-01A-11D-1669-08		10188202	187834228	4	34952											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52598238	52598238	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	-	52598238	C	-	52598238	7	5	595	1	0	1	0	1	0	0	0	0	11498	478	17	0	1229	0	PBRM1	3	52598238	Frame_Shift_Del	DEL	C	TCGA-CZ-5989-01A-11D-1669-08	42410036	52598238	145424192	5	34953											
ZBTB38	253461	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	141163046	141163046	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	141163046	C	T	141163046	4	4	595	1	0	0	0	0	0	1	0	0	17551	827	29	2	1818	2	ZBTB38	3	141163046	Nonsense_Mutation	SNP	C	TCGA-CZ-5989-01A-11D-1669-08	88564808	141163046	56859384	6	34954											
SPON2	10417	hgsc.bcm.edu;ucsc.edu	37	4	1161269	1161270	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	1161270	-	T	1161269	7	5	595	1	0	1	1	0	0	0	0	0	15095	1020	36	0	12	0	SPON2	4	1161269	Frame_Shift_Ins	INS	-	TCGA-CZ-5989-01A-11D-1669-08		1161269	189993007	7	34955											
ACOX3	8310	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	8416611	8416611	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	8416611	G	A	8416611	2	1	595	1	0	0	0	0	0	0	0	1	160	1277	45	2		2	ACOX3	4	8416611	Silent	SNP	G	TCGA-CZ-5989-01A-11D-1669-08	7255342	8416611	182737665	8	34956											
RAPGEF2	9693	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	160260314	160260314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	160260314	G	A	160260314	3	1	595	1	0	0	0	0	1	0	0	0	13057	1087	38	1	1909	1	RAPGEF2	4	160260314	Missense_Mutation	SNP	G	TCGA-CZ-5989-01A-11D-1669-08	151843703	160260314	30893962	9	34957											
RICTOR	253260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	38950756	38950756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	C	38950756	T	C	38950756	3	2	595	1	0	0	0	0	1	0	0	0	13371	1493	52	3	1964	3	RICTOR	5	38950756	Missense_Mutation	SNP	T	TCGA-CZ-5989-01A-11D-1669-08		38950756	141964504	10	34958											
PCDHB1	29930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140431290	140431290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	140431290	C	A	140431290	3	1	595	1	0	0	0	0	1	0	0	0	11541	652	23	4	237	4	PCDHB1	5	140431290	Missense_Mutation	SNP	C	TCGA-CZ-5989-01A-11D-1669-08	101480534	140431290	40483970	11	34959											
PRSS16	10279	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	27222582	27222582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	27222582	G	A	27222582	3	1	595	1	0	0	0	0	1	0	0	0	12626	1203	42	2	1299	2	PRSS16	6	27222582	Missense_Mutation	SNP	G	TCGA-CZ-5989-01A-11D-1669-08		27222582	143892485	12	34960											
PFDN6	10471	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33257668	33257668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	G	33257668	A	G	33257668	3	3	595	1	0	0	0	0	1	0	0	0	11766	246	9	3	37	3	PFDN6	6	33257668	Missense_Mutation	SNP	A	TCGA-CZ-5989-01A-11D-1669-08	6035086	33257668	137857399	13	34961											
RFPL4B	442247	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	112671198	112671198	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	C	112671198	T	C	112671198	2	2	595	1	0	0	0	0	0	0	0	1	13269	1461	51	3		3	RFPL4B	6	112671198	Silent	SNP	T	TCGA-CZ-5989-01A-11D-1669-08	79413530	112671198	58443869	14	34962											
TRIM55	84675	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	67064733	67064733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	C	67064733	A	C	67064733	3	2	595	1	0	0	0	0	1	0	0	0	16541	69	3	5	1137	5	TRIM55	8	67064733	Missense_Mutation	SNP	A	TCGA-CZ-5989-01A-11D-1669-08		67064733	79299289	15	34963											
ZBTB10	65986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	81411971	81411971	+	Silent	SNP	T	T	C	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	C	81411971	T	C	81411971	2	2	595	1	0	0	0	0	0	0	0	1	17535	1403	49	3		3	ZBTB10	8	81411971	Silent	SNP	T	TCGA-CZ-5989-01A-11D-1669-08	14347238	81411971	64952051	16	34964											
TSNARE1	203062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	143310906	143310906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	143310906	G	A	143310906	3	1	595	1	0	0	0	0	1	0	0	0	16642	1294	45	2	64	2	TSNARE1	8	143310906	Missense_Mutation	SNP	G	TCGA-CZ-5989-01A-11D-1669-08	61898935	143310906	3053116	17	34965											
PBX3	5090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	128724472	128724472	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	128724472	C	T	128724472	2	4	595	1	0	0	0	0	0	0	0	1	11501	871	31	1		1	PBX3	9	128724472	Silent	SNP	C	TCGA-CZ-5989-01A-11D-1669-08		128724472	12488959	18	34966											
VAV2	7410	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136674238	136674238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	136674238	T	A	136674238	3	1	595	1	0	0	0	0	1	0	0	0	17144	1667	58	5	2142	5	VAV2	9	136674238	Missense_Mutation	SNP	T	TCGA-CZ-5989-01A-11D-1669-08	7949766	136674238	4539193	19	34967											
THNSL1	79896	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	25312229	25312229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	G	25312229	A	G	25312229	3	3	595	1	0	0	0	0	1	0	0	0	15874	333	12	3	79	3	THNSL1	10	25312229	Missense_Mutation	SNP	A	TCGA-CZ-5989-01A-11D-1669-08		25312229	110222518	20	34968											
CYP2C8	1558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96805619	96805619	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	96805619	G	A	96805619	2	1	595	1	0	0	0	0	0	0	0	1	4169	1310	46	2		2	CYP2C8	10	96805619	Silent	SNP	G	TCGA-CZ-5989-01A-11D-1669-08	71493390	96805619	38729128	21	34969											
GBF1	8729	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	104129688	104129688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	104129688	G	T	104129688	3	4	595	1	0	0	0	0	1	0	0	0	6278	1232	43	4	3381	4	GBF1	10	104129688	Missense_Mutation	SNP	G	TCGA-CZ-5989-01A-11D-1669-08	7324069	104129688	31405059	22	34970											
MUC6	4588	broad.mit.edu	37	11	1025856	1025856	+	Silent	SNP	G	T	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	1025856	T	T	1025856	2	4	595	1	0	0	0	0	0	0	0	1	9987	932	33	4		4	MUC6	11	1025856	Silent	SNP	G	TCGA-CZ-5989-01A-11D-1669-08		1025856	133980660	23	34971											
ABCC9	10060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	22015946	22015946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	22015946	C	A	22015946	3	1	595	1	0	0	0	0	1	0	0	0	59	740	26	4	2595	4	ABCC9	12	22015946	Missense_Mutation	SNP	C	TCGA-CZ-5989-01A-11D-1669-08		22015946	111835949	24	34972											
KRT78	196374	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53242514	53242514	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	53242514	C	T	53242514	2	4	595	1	0	0	0	0	0	0	0	1	8498	610	22	2		2	KRT78	12	53242514	Silent	SNP	C	TCGA-CZ-5989-01A-11D-1669-08	31226568	53242514	80609381	25	34973											
SPRYD4	283377	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56863103	56863103	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	56863103	G	A	56863103	4	1	595	1	0	0	0	0	0	1	0	0	15122	1241	43	2	372	2	SPRYD4	12	56863103	Nonsense_Mutation	SNP	G	TCGA-CZ-5989-01A-11D-1669-08	3620589	56863103	76988792	26	34974											
MAP3K9	4293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	71267589	71267589	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	71267589	G	A	71267589	2	1	595	1	0	0	0	0	0	0	0	1	9264	1219	43	2		2	MAP3K9	14	71267589	Silent	SNP	G	TCGA-CZ-5989-01A-11D-1669-08		71267589	36081951	27	34975											
PLA2G4F	255189	hgsc.bcm.edu;ucsc.edu	37	15	42434287	42434287	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	42434287	C	T	42434287	2	4	595	1	0	0	0	0	0	0	0	1	12013	581	21	2		2	PLA2G4F	15	42434287	Silent	SNP	C	TCGA-CZ-5989-01A-11D-1669-08		42434287	60097105	28	34976											
CELF6	60677	broad.mit.edu;ucsc.edu	37	15	72597100	72597100	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	C	72597100	C	C	72597100	3	2	595	1	0	0	0	0	1	0	0	0	3222	156	6	5	1104	5	CELF6	15	72597100	Missense_Mutation	SNP	A	TCGA-CZ-5989-01A-11D-1669-08	30162813	72597100	29934292	29	34977											
UNC45A	55898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	91478784	91478784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	91478784	T	A	91478784	3	1	595	1	0	0	0	0	1	0	0	0	17000	1696	59	5	68	5	UNC45A	15	91478784	Missense_Mutation	SNP	T	TCGA-CZ-5989-01A-11D-1669-08	18881684	91478784	11052608	30	34978											
MYLK3	91807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	46781877	46781877	+	Missense_Mutation	SNP	C	C	T	rs143624767		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	46781877	C	T	46781877	3	4	595	1	0	0	0	0	1	0	0	0	10065	652	23	1	2282	1	MYLK3	16	46781877	Missense_Mutation	SNP	C	TCGA-CZ-5989-01A-11D-1669-08		46781877	43572876	31	34979											
NOD2	64127	hgsc.bcm.edu;ucsc.edu	37	16	50763736	50763736	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	50763736	A	T	50763736	3	4	595	1	0	0	0	0	1	0	0	0	10524	130	5	5	3016	5	NOD2	16	50763736	Missense_Mutation	SNP	A	TCGA-CZ-5989-01A-11D-1669-08	3981859	50763736	39591017	32	34980											
ZNF23	7571	broad.mit.edu	37	16	71487199	71487199	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	71487199	T	T	71487199	3	4	595	1	0	0	0	0	1	0	0	0	17795	188	7	5	1850	5	ZNF23	16	71487199	Missense_Mutation	SNP	A	TCGA-CZ-5989-01A-11D-1669-08	20723463	71487199	18867554	33	34981											
TRPV1	7442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	3486632	3486632	+	Silent	SNP	C	C	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	3486632	C	T	3486632	2	4	595	1	0	0	0	0	0	0	0	1	16607	637	22	2		2	TRPV1	17	3486632	Silent	SNP	C	TCGA-CZ-5989-01A-11D-1669-08		3486632	77708578	34	34982											
XYLT2	64132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48432223	48432223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	48432223	C	A	48432223	3	1	595	1	0	0	0	0	1	0	0	0	17476	564	20	4	827	4	XYLT2	17	48432223	Missense_Mutation	SNP	C	TCGA-CZ-5989-01A-11D-1669-08	44945591	48432223	32762987	35	34983											
ABCA9	10350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	67023934	67023934	+	Silent	SNP	G	G	A	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	A	67023934	G	A	67023934	2	1	595	1	0	0	0	0	0	0	0	1	39	1368	48	2		2	ABCA9	17	67023934	Silent	SNP	G	TCGA-CZ-5989-01A-11D-1669-08	18591711	67023934	14171276	36	34984											
SRP68	6730	broad.mit.edu;hgsc.bcm.edu	37	17	74041394	74041394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	74041394	G	T	74041394	3	4	595	1	0	0	0	0	1	0	0	0	15168	1029	36	4	530	4	SRP68	17	74041394	Missense_Mutation	SNP	G	TCGA-CZ-5989-01A-11D-1669-08	7017460	74041394	7153816	37	34985											
CCBE1	147372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	57103282	57103282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	57103282	C	T	57103282	3	4	595	1	0	0	0	0	1	0	0	0	2733	652	23	1	145	1	CCBE1	18	57103282	Missense_Mutation	SNP	C	TCGA-CZ-5989-01A-11D-1669-08		57103282	20973966	38	34986											
COL5A3	50509	broad.mit.edu	37	19	10073521	10073521	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	T	10073521	T	T	10073521	3	4	595	1	0	0	0	0	1	0	0	0	3700	391	14	5	424	5	COL5A3	19	10073521	Missense_Mutation	SNP	A	TCGA-CZ-5989-01A-11D-1669-08		10073521	49055462	39	34987											
EIF6	3692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33872048	33872048	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	C	33872048	G	C	33872048	3	2	595	1	0	0	0	0	1	0	0	0	5047	971	34	4	633	4	EIF6	20	33872048	Missense_Mutation	SNP	G	TCGA-CZ-5989-01A-11D-1669-08		33872048	29153472	40	34988											
TOMM34	10953	hgsc.bcm.edu;ucsc.edu	37	20	43572209	43572210	+	In_Frame_Ins	INS	-	-	TTA	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	TTA	43572210	-	TTA	43572209	7	5	595	1	0	1	1	0	0	0	0	0	16369	1406	49	0	227	0	TOMM34	20	43572209	In_Frame_Ins	INS	-	TCGA-CZ-5989-01A-11D-1669-08	9700161	43572209	19453311	41	34989											
NCOA3	8202	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	46252829	46252829	+	Splice_Site	SNP	T	T	C	novel		TCGA-CZ-5989-01A-11D-1669-08	TCGA-CZ-5989-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	852e1614-35c0-4ba7-a29c-e8e2a91aa1b7	4848f879-d959-44d1-8732-e7817c136370	C	46252829	T	C	46252829	5	2	595	1	0	0	0	0	0	0	1	0	10237	1652	57	3	264	3	NCOA3	20	46252829	Splice_Site	SNP	T	TCGA-CZ-5989-01A-11D-1669-08	2680620	46252829	16772691	42	34990											
RLF	6018	hgsc.bcm.edu;ucsc.edu	37	1	40705015	40705015	+	Silent	SNP	A	A	G	rs1044739	alternate_allele	TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	G	40705015	A	G	40705015	2	3	596	1	0	0	0	0	0	0	0	1	13402	146	6	3		3	RLF	1	40705015	Silent	SNP	A	TCGA-DV-5565-01A-01D-1534-10		40705015	208545606	1	34991											
MIER1	57708	hgsc.bcm.edu;ucsc.edu	37	1	67442342	67442342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	G	67442342	A	G	67442342	3	3	596	1	0	0	0	0	1	0	0	0	9587	449	16	3	1289	3	MIER1	1	67442342	Missense_Mutation	SNP	A	TCGA-DV-5565-01A-01D-1534-10	26737327	67442342	181808279	2	34992											
LAMC1	3915	hgsc.bcm.edu;ucsc.edu	37	1	183094629	183094629	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	-	183094629	C	-	183094629	7	5	596	1	0	1	0	1	0	0	0	0	8621	564	20	0	2803	0	LAMC1	1	183094629	Frame_Shift_Del	DEL	C	TCGA-DV-5565-01A-01D-1534-10	115652287	183094629	66155992	3	34993											
KDM5B	10765	hgsc.bcm.edu;ucsc.edu	37	1	202710756	202710756	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	-	202710756	T	-	202710756	7	5	596	1	0	1	0	1	0	0	0	0	8141	1435	50	0	1986	0	KDM5B	1	202710756	Frame_Shift_Del	DEL	T	TCGA-DV-5565-01A-01D-1534-10	19616127	202710756	46539865	4	34994											
IL10	3586	hgsc.bcm.edu;ucsc.edu	37	1	206944318	206944318	+	Silent	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	206944318	G	A	206944318	2	1	596	1	0	0	0	0	0	0	0	1	7626	1368	48	2		2	IL10	1	206944318	Silent	SNP	G	TCGA-DV-5565-01A-01D-1534-10	4233562	206944318	42306303	5	34995											
RAD51AP2	729475	hgsc.bcm.edu;ucsc.edu	37	2	17697759	17697759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	17697759	T	A	17697759	3	1	596	1	0	0	0	0	1	0	0	0	13000	1754	61	5	1567	5	RAD51AP2	2	17697759	Missense_Mutation	SNP	T	TCGA-DV-5565-01A-01D-1534-10		17697759	225501614	6	34996											
PLB1	151056	hgsc.bcm.edu;ucsc.edu	37	2	28851970	28851970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	28851970	G	A	28851970	3	1	596	1	0	0	0	0	1	0	0	0	12031	1203	42	2	3979	2	PLB1	2	28851970	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	11154211	28851970	214347403	7	34997											
IL1F8	0	hgsc.bcm.edu;ucsc.edu	37	2	113788714	113788714	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	113788714	G	C	113788714	3	2	596	1	0	0	0	0	1	0	0	0	7663	1174	41	4	695	4	IL1F8	2	113788714	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	84936744	113788714	129410659	8	34998											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179667069	179667069	+	Splice_Site	SNP	C	C	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	179667069	C	T	179667069	5	4	596	1	0	0	0	0	0	0	1	0	16747	695	24	2	111337	2	TTN	2	179667069	Splice_Site	SNP	C	TCGA-DV-5565-01A-01D-1534-10	65878355	179667069	63532304	9	34999											
ZNF860	344787	hgsc.bcm.edu;ucsc.edu	37	3	32031883	32031883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	32031883	C	A	32031883	3	1	596	1	0	0	0	0	1	0	0	0	18206	884	31	4	1314	4	ZNF860	3	32031883	Missense_Mutation	SNP	C	TCGA-DV-5565-01A-01D-1534-10		32031883	165990547	10	35000											
C4orf14	0	hgsc.bcm.edu	37	4	57842799	57842800	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	-	57842800	GC	-	57842799	7	5	596	1	0	1	0	1	0	0	0	0	2253	1203	42	0	1171	0	C4orf14	4	57842799	Frame_Shift_Del	DEL	GC	TCGA-DV-5565-01A-01D-1534-10		57842799	133311477	11	35001											
ANKRD17	26057	hgsc.bcm.edu;ucsc.edu	37	4	74017194	74017194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	74017194	C	T	74017194	3	4	596	1	0	0	0	0	1	0	0	0	646	922	32	2	6641	2	ANKRD17	4	74017194	Missense_Mutation	SNP	C	TCGA-DV-5565-01A-01D-1534-10	16174395	74017194	117137082	12	35002											
AFF1	4299	hgsc.bcm.edu;ucsc.edu	37	4	88029399	88029399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	88029399	G	T	88029399	3	4	596	1	0	0	0	0	1	0	0	0	356	942	33	4	1524	4	AFF1	4	88029399	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	14012205	88029399	103124877	13	35003											
FBN2	2201	hgsc.bcm.edu;ucsc.edu	37	5	127613688	127613688	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	G	127613688	T	G	127613688	3	3	596	1	0	0	0	0	1	0	0	0	5710	1783	62	5	1415	5	FBN2	5	127613688	Missense_Mutation	SNP	T	TCGA-DV-5565-01A-01D-1534-10		127613688	53301572	14	35004											
HMMR	3161	hgsc.bcm.edu	37	5	162917425	162917426	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	162917426	-	A	162917425	7	5	596	1	0	1	1	0	0	0	0	0	7249	1509	53	0	2058	0	HMMR	5	162917425	Frame_Shift_Ins	INS	-	TCGA-DV-5565-01A-01D-1534-10	35303737	162917425	17997835	15	35005											
STX1A	6804	hgsc.bcm.edu;ucsc.edu	37	7	73123410	73123410	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	G	73123410	C	G	73123410	3	3	596	1	0	0	0	0	1	0	0	0	15355	855	30	4	829	4	STX1A	7	73123410	Missense_Mutation	SNP	C	TCGA-DV-5565-01A-01D-1534-10		73123410	86015253	16	35006											
AKAP9	10142	hgsc.bcm.edu;ucsc.edu	37	7	91722542	91722542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	91722542	C	A	91722542	3	1	596	1	0	0	0	0	1	0	0	0	459	564	20	4	9644	4	AKAP9	7	91722542	Missense_Mutation	SNP	C	TCGA-DV-5565-01A-01D-1534-10	18599132	91722542	67416121	17	35007											
ST7	7982	hgsc.bcm.edu;ucsc.edu	37	7	116849867	116849867	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	G	116849867	C	G	116849867	3	3	596	1	0	0	0	0	1	0	0	0	15241	845	30	4	1331	4	ST7	7	116849867	Missense_Mutation	SNP	C	TCGA-DV-5565-01A-01D-1534-10	25127325	116849867	42288796	18	35008											
LEP	3952	hgsc.bcm.edu;ucsc.edu	37	7	127894682	127894682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	127894682	G	A	127894682	3	1	596	1	0	0	0	0	1	0	0	0	8734	1348	47	2	376	2	LEP	7	127894682	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	11044815	127894682	31243981	19	35009											
C8orf42	157695	hgsc.bcm.edu;ucsc.edu	37	8	444511	444511	+	Silent	SNP	T	T	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	444511	T	C	444511	2	2	596	1	0	0	0	0	0	0	0	1	2430	1490	52	3		3	C8orf42	8	444511	Silent	SNP	T	TCGA-DV-5565-01A-01D-1534-10		444511	145919511	20	35010											
DPYS	1807	hgsc.bcm.edu;ucsc.edu	37	8	105440278	105440278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	105440278	T	C	105440278	3	2	596	1	0	0	0	0	1	0	0	0	4748	1435	50	3	553	3	DPYS	8	105440278	Missense_Mutation	SNP	T	TCGA-DV-5565-01A-01D-1534-10	104995767	105440278	40923744	21	35011											
ENY2	56943	hgsc.bcm.edu;ucsc.edu	37	8	110355657	110355657	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	110355657	A	C	110355657	3	2	596	1	0	0	0	0	1	0	0	0	5148	247	9	5	271	5	ENY2	8	110355657	Missense_Mutation	SNP	A	TCGA-DV-5565-01A-01D-1534-10	4915379	110355657	36008365	22	35012											
C9orf93	0	hgsc.bcm.edu;ucsc.edu	37	9	15723685	15723685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	15723685	G	A	15723685	3	1	596	1	0	0	0	0	1	0	0	0	2508	1203	42	2	1478	2	C9orf93	9	15723685	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10		15723685	125489746	23	35013											
IFNA6	3443	hgsc.bcm.edu;ucsc.edu	37	9	21350656	21350656	+	Silent	SNP	G	G	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	21350656	G	T	21350656	2	4	596	1	0	0	0	0	0	0	0	1	7548	932	33	4		4	IFNA6	9	21350656	Silent	SNP	G	TCGA-DV-5565-01A-01D-1534-10	5626971	21350656	119862775	24	35014											
PRUNE2	158471	hgsc.bcm.edu;ucsc.edu	37	9	79324116	79324116	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	79324116	G	C	79324116	4	2	596	1	0	0	0	0	0	1	0	0	12651	1294	45	4	6240	4	PRUNE2	9	79324116	Nonsense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	57973460	79324116	61889315	25	35015											
COL27A1	85301	hgsc.bcm.edu;ucsc.edu	37	9	116931547	116931547	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	116931547	T	A	116931547	3	1	596	1	0	0	0	0	1	0	0	0	3687	1580	55	5	1722	5	COL27A1	9	116931547	Missense_Mutation	SNP	T	TCGA-DV-5565-01A-01D-1534-10	37607431	116931547	24281884	26	35016											
PDCL	5082	hgsc.bcm.edu;ucsc.edu	37	9	125585437	125585437	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	G	125585437	T	G	125585437	3	3	596	1	0	0	0	0	1	0	0	0	11633	1580	55	5	701	5	PDCL	9	125585437	Missense_Mutation	SNP	T	TCGA-DV-5565-01A-01D-1534-10	8653890	125585437	15627994	27	35017											
CDHR5	53841	hgsc.bcm.edu;ucsc.edu	37	11	619336	619336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	619336	G	C	619336	3	2	596	1	0	0	0	0	1	0	0	0	3124	1386	48	4	1205	4	CDHR5	11	619336	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10		619336	134387180	28	35018											
QSER1	79832	hgsc.bcm.edu;ucsc.edu	37	11	32953537	32953537	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	32953537	G	C	32953537	3	2	596	1	0	0	0	0	1	0	0	0	12895	1291	45	4	352	4	QSER1	11	32953537	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	32334201	32953537	102052979	29	35019											
NARS2	79731	hgsc.bcm.edu	37	11	78277313	78277313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	78277313	G	T	78277313	3	4	596	1	0	0	0	0	1	0	0	0	10178	1165	41	4	1099	4	NARS2	11	78277313	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	45323776	78277313	56729203	30	35020											
SLC37A4	2542	hgsc.bcm.edu;ucsc.edu	37	11	118899998	118899998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	118899998	G	A	118899998	3	1	596	1	0	0	0	0	1	0	0	0	14613	1058	37	1	1310	1	SLC37A4	11	118899998	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	40622685	118899998	16106518	31	35021											
CCDC15	80071	hgsc.bcm.edu;ucsc.edu	37	11	124910539	124910539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	124910539	A	T	124910539	3	4	596	1	0	0	0	0	1	0	0	0	2786	362	13	5	2846	5	CCDC15	11	124910539	Missense_Mutation	SNP	A	TCGA-DV-5565-01A-01D-1534-10	6010541	124910539	10095977	32	35022											
PABPC3	5042	hgsc.bcm.edu;ucsc.edu	37	13	25670499	25670499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	25670499	G	A	25670499	3	1	596	1	0	0	0	0	1	0	0	0	11372	1087	38	1	165	1	PABPC3	13	25670499	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10		25670499	89499379	33	35023											
PAK6	56924	hgsc.bcm.edu;ucsc.edu	37	15	40568170	40568170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	40568170	C	T	40568170	3	4	596	1	0	0	0	0	1	0	0	0	11411	759	27	1	1951	1	PAK6	15	40568170	Missense_Mutation	SNP	C	TCGA-DV-5565-01A-01D-1534-10		40568170	61963222	34	35024											
SNX29	92017	hgsc.bcm.edu;ucsc.edu	37	16	12155455	12155455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	12155455	T	C	12155455	3	2	596	1	0	0	0	0	1	0	0	0	14911	1551	54	3	42	3	SNX29	16	12155455	Missense_Mutation	SNP	T	TCGA-DV-5565-01A-01D-1534-10		12155455	78199298	35	35025											
ATP2C2	9914	hgsc.bcm.edu;ucsc.edu	37	16	84472822	84472822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	84472822	C	T	84472822	3	4	596	1	0	0	0	0	1	0	0	0	1144	536	19	1	1083	1	ATP2C2	16	84472822	Missense_Mutation	SNP	C	TCGA-DV-5565-01A-01D-1534-10	72317367	84472822	5881931	36	35026											
OR1G1	8390	hgsc.bcm.edu;ucsc.edu	37	17	3030271	3030271	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	3030271	G	C	3030271	3	2	596	1	0	0	0	0	1	0	0	0	10964	1232	43	4	370	4	OR1G1	17	3030271	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10		3030271	78164939	37	35027											
UBB	7314	hgsc.bcm.edu	37	17	16285911	16285911	+	Silent	SNP	A	A	G	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	G	16285911	A	G	16285911	2	3	596	1	0	0	0	0	0	0	0	1	16853	108	4	3		3	UBB	17	16285911	Silent	SNP	A	TCGA-DV-5565-01A-01D-1534-10	13255640	16285911	64909299	38	35028											
ABHD15	116236	hgsc.bcm.edu;ucsc.edu	37	17	27889659	27889659	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	27889659	C	A	27889659	4	1	596	1	0	0	0	0	0	1	0	0	81	632	22	4	83	4	ABHD15	17	27889659	Nonsense_Mutation	SNP	C	TCGA-DV-5565-01A-01D-1534-10	11603748	27889659	53305551	39	35029											
ANKRD12	23253	hgsc.bcm.edu	37	18	9254693	9254693	+	Silent	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	9254693	G	A	9254693	2	1	596	1	0	0	0	0	0	0	0	1	640	1281	45	2		2	ANKRD12	18	9254693	Silent	SNP	G	TCGA-DV-5565-01A-01D-1534-10		9254693	68822555	40	35030											
KIAA1632	0	hgsc.bcm.edu;ucsc.edu	37	18	43440143	43440143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	43440143	G	T	43440143	3	4	596	1	0	0	0	0	1	0	0	0	8256	1203	42	4	824	4	KIAA1632	18	43440143	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	34185450	43440143	34637105	41	35031											
RTTN	25914	hgsc.bcm.edu;ucsc.edu	37	18	67684795	67684795	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	67684795	T	A	67684795	3	1	596	1	0	0	0	0	1	0	0	0	13750	1435	50	5	427	5	RTTN	18	67684795	Missense_Mutation	SNP	T	TCGA-DV-5565-01A-01D-1534-10	24244652	67684795	10392453	42	35032											
OR1M1	125963	hgsc.bcm.edu;ucsc.edu	37	19	9203934	9203934	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	9203934	A	T	9203934	3	4	596	1	0	0	0	0	1	0	0	0	10975	43	2	5	16	5	OR1M1	19	9203934	Missense_Mutation	SNP	A	TCGA-DV-5565-01A-01D-1534-10		9203934	49925049	43	35033											
EMR2	30817	hgsc.bcm.edu;ucsc.edu	37	19	14854320	14854320	+	Missense_Mutation	SNP	C	C	A	rs141428388		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	14854320	C	A	14854320	3	1	596	1	0	0	0	0	1	0	0	0	5107	595	21	4	104	4	EMR2	19	14854320	Missense_Mutation	SNP	C	TCGA-DV-5565-01A-01D-1534-10	5650386	14854320	44274663	44	35034											
ZNF302	55900	hgsc.bcm.edu	37	19	35175650	35175650	+	Silent	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	35175650	G	A	35175650	2	1	596	1	0	0	0	0	0	0	0	1	17844	933	33	2		2	ZNF302	19	35175650	Silent	SNP	G	TCGA-DV-5565-01A-01D-1534-10	20321330	35175650	23953333	45	35035											
SIPA1L3	23094	hgsc.bcm.edu;ucsc.edu	37	19	38609984	38609984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	C	38609984	G	C	38609984	3	2	596	1	0	0	0	0	1	0	0	0	14344	1203	42	4	2356	4	SIPA1L3	19	38609984	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	3434334	38609984	20518999	46	35036											
KIF3B	9371	hgsc.bcm.edu;ucsc.edu	37	20	30898460	30898460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	30898460	G	T	30898460	3	4	596	1	0	0	0	0	1	0	0	0	8308	1174	41	4	882	4	KIF3B	20	30898460	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10		30898460	32127060	47	35037											
PLCG1	5335	hgsc.bcm.edu;ucsc.edu	37	20	39802104	39802104	+	Silent	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	39802104	G	A	39802104	2	1	596	1	0	0	0	0	0	0	0	1	12042	1364	48	2		2	PLCG1	20	39802104	Silent	SNP	G	TCGA-DV-5565-01A-01D-1534-10	8903644	39802104	23223416	48	35038											
MYBL2	4605	hgsc.bcm.edu;ucsc.edu	37	20	42340179	42340179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	T	42340179	G	T	42340179	3	4	596	1	0	0	0	0	1	0	0	0	10017	1203	42	4	1699	4	MYBL2	20	42340179	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	2538075	42340179	20685341	49	35039											
MYT1	4661	hgsc.bcm.edu;ucsc.edu	37	20	62839567	62839567	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	62839567	T	A	62839567	3	1	596	1	0	0	0	0	1	0	0	0	10113	1638	57	5	1036	5	MYT1	20	62839567	Missense_Mutation	SNP	T	TCGA-DV-5565-01A-01D-1534-10	20499388	62839567	185953	50	35040											
UBASH3A	53347	hgsc.bcm.edu;ucsc.edu	37	21	43867186	43867186	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	-	43867186	G	-	43867186	7	5	596	1	0	1	0	1	0	0	0	0	16851	1319	46	0	1926	0	UBASH3A	21	43867186	Frame_Shift_Del	DEL	G	TCGA-DV-5565-01A-01D-1534-10		43867186	4262709	51	35041											
CLTCL1	8218	hgsc.bcm.edu;ucsc.edu	37	22	19175147	19175147	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	19175147	T	A	19175147	3	1	596	1	0	0	0	0	1	0	0	0	3569	1464	51	5	410	5	CLTCL1	22	19175147	Missense_Mutation	SNP	T	TCGA-DV-5565-01A-01D-1534-10		19175147	32129419	52	35042											
FOXRED2	80020	hgsc.bcm.edu;ucsc.edu	37	22	36894108	36894108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5565-01A-01D-1534-10	TCGA-DV-5565-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee24d408-6043-4ca0-8bde-f29e798cc479	aa2bc3bd-65b8-4cc1-b6e5-ece86aa84888	A	36894108	G	A	36894108	3	1	596	1	0	0	0	0	1	0	0	0	6041	1086	38	1	758	1	FOXRED2	22	36894108	Missense_Mutation	SNP	G	TCGA-DV-5565-01A-01D-1534-10	17718961	36894108	14410458	53	35043											
RBM15	64783	hgsc.bcm.edu;ucsc.edu	37	1	110888165	110888165	+	Silent	SNP	T	T	C	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	C	110888165	T	C	110888165	2	2	597	1	0	0	0	0	0	0	0	1	13129	1809	63	3		3	RBM15	1	110888165	Silent	SNP	T	TCGA-DV-5566-01A-01D-1534-10		110888165	138362456	1	35044											
EMX1	2016	hgsc.bcm.edu;ucsc.edu	37	2	73161028	73161028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	73161028	G	A	73161028	3	1	597	1	0	0	0	0	1	0	0	0	5109	1087	38	1	828	1	EMX1	2	73161028	Missense_Mutation	SNP	G	TCGA-DV-5566-01A-01D-1534-10		73161028	170038345	2	35045											
MYL1	4632	hgsc.bcm.edu;ucsc.edu	37	2	211159133	211159133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	211159133	G	A	211159133	3	1	597	1	0	0	0	0	1	0	0	0	10050	1203	42	2	282	2	MYL1	2	211159133	Missense_Mutation	SNP	G	TCGA-DV-5566-01A-01D-1534-10	137998105	211159133	32040240	3	35046											
WDR69	164781	hgsc.bcm.edu;ucsc.edu	37	2	228758531	228758531	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	C	228758531	A	C	228758531	3	2	597	1	0	0	0	0	1	0	0	0	17331	333	12	5	356	5	WDR69	2	228758531	Missense_Mutation	SNP	A	TCGA-DV-5566-01A-01D-1534-10	17599398	228758531	14440842	4	35047											
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52692298	52692298	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	52692298	G	A	52692298	4	1	597	1	0	0	0	0	0	1	0	0	11498	1328	46	2	4442	2	PBRM1	3	52692298	Nonsense_Mutation	SNP	G	TCGA-DV-5566-01A-01D-1534-10		52692298	145330132	5	35048											
IGSF11	152404	hgsc.bcm.edu;ucsc.edu	37	3	118621765	118621765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	118621765	G	T	118621765	3	4	597	1	0	0	0	0	1	0	0	0	7605	1290	45	4	401	4	IGSF11	3	118621765	Missense_Mutation	SNP	G	TCGA-DV-5566-01A-01D-1534-10	65929467	118621765	79400665	6	35049											
CLK4	57396	hgsc.bcm.edu;ucsc.edu	37	5	178045711	178045711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	178045711	C	T	178045711	3	4	597	1	0	0	0	0	1	0	0	0	3541	681	24	2	1259	2	CLK4	5	178045711	Missense_Mutation	SNP	C	TCGA-DV-5566-01A-01D-1534-10		178045711	2869549	7	35050											
TREML2	79865	hgsc.bcm.edu;ucsc.edu	37	6	41162231	41162231	+	Silent	SNP	C	C	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	41162231	C	T	41162231	2	4	597	1	0	0	0	0	0	0	0	1	16485	755	27	1		1	TREML2	6	41162231	Silent	SNP	C	TCGA-DV-5566-01A-01D-1534-10		41162231	129952836	8	35051											
ELOVL4	6785	hgsc.bcm.edu;ucsc.edu	37	6	80636042	80636043	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	TC	80636043	-	TC	80636042	7	5	597	1	0	1	1	0	0	0	0	0	5078	1609	56	0	807	0	ELOVL4	6	80636042	Frame_Shift_Ins	INS	-	TCGA-DV-5566-01A-01D-1534-10	39473811	80636042	90479025	9	35052											
ANKRD6	22881	hgsc.bcm.edu;ucsc.edu	37	6	90340623	90340627	+	Frame_Shift_Del	DEL	ATCAG	ATCAG	-	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	ATCAG	ATCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	-	90340627	ATCAG	-	90340623	7	5	597	1	0	1	0	1	0	0	0	0	685	101	4	0	2127	0	ANKRD6	6	90340623	Frame_Shift_Del	DEL	ATCAG	TCGA-DV-5566-01A-01D-1534-10	9704581	90340623	80774444	10	35053											
MAN1A1	4121	hgsc.bcm.edu;ucsc.edu	37	6	119623209	119623209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	G	119623209	T	G	119623209	3	3	597	1	0	0	0	0	1	0	0	0	9217	1792	62	5	1241	5	MAN1A1	6	119623209	Missense_Mutation	SNP	T	TCGA-DV-5566-01A-01D-1534-10	29282586	119623209	51491858	11	35054											
KIAA1244	57221	hgsc.bcm.edu	37	6	138584327	138584327	+	Silent	SNP	C	C	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	138584327	C	T	138584327	2	4	597	1	0	0	0	0	0	0	0	1	8224	842	30	2		2	KIAA1244	6	138584327	Silent	SNP	C	TCGA-DV-5566-01A-01D-1534-10	18961118	138584327	32530740	12	35055											
SYNE1	23345	hgsc.bcm.edu;ucsc.edu	37	6	152470618	152470618	+	Silent	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	152470618	G	A	152470618	2	1	597	1	0	0	0	0	0	0	0	1	15457	1190	42	2		2	SYNE1	6	152470618	Silent	SNP	G	TCGA-DV-5566-01A-01D-1534-10	13886291	152470618	18644449	13	35056											
PLG	5340	hgsc.bcm.edu;ucsc.edu	37	6	161139489	161139489	+	Splice_Site	SNP	G	G	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	161139489	G	T	161139489	5	4	597	1	0	0	0	0	0	0	1	0	12093	1043	36	4	985	4	PLG	6	161139489	Splice_Site	SNP	G	TCGA-DV-5566-01A-01D-1534-10	8668871	161139489	9975578	14	35057											
CREB3L2	64764	hgsc.bcm.edu;ucsc.edu	37	7	137593138	137593138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	137593138	G	A	137593138	3	1	597	1	0	0	0	0	1	0	0	0	3859	1290	45	2	966	2	CREB3L2	7	137593138	Missense_Mutation	SNP	G	TCGA-DV-5566-01A-01D-1534-10		137593138	21545525	15	35058											
TM2D2	83877	hgsc.bcm.edu;ucsc.edu	37	8	38853913	38853913	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	38853913	G	A	38853913	4	1	597	1	0	0	0	0	0	1	0	0	15976	1357	47	2	712	2	TM2D2	8	38853913	Nonsense_Mutation	SNP	G	TCGA-DV-5566-01A-01D-1534-10		38853913	107510109	16	35059											
C8orf47	203111	hgsc.bcm.edu;ucsc.edu	37	8	99101670	99101670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	99101670	C	T	99101670	3	4	597	1	0	0	0	0	1	0	0	0	2434	913	32	2	431	2	C8orf47	8	99101670	Missense_Mutation	SNP	C	TCGA-DV-5566-01A-01D-1534-10	60247757	99101670	47262352	17	35060											
VPS13A	23230	hgsc.bcm.edu;ucsc.edu	37	9	79897064	79897064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	G	79897064	T	G	79897064	3	3	597	1	0	0	0	0	1	0	0	0	17201	1838	64	5	3106	5	VPS13A	9	79897064	Missense_Mutation	SNP	T	TCGA-DV-5566-01A-01D-1534-10		79897064	61316367	18	35061											
COL17A1	1308	hgsc.bcm.edu;ucsc.edu	37	10	105830254	105830254	+	Silent	SNP	G	G	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	105830254	G	T	105830254	2	4	597	1	0	0	0	0	0	0	0	1	3676	987	35	4		4	COL17A1	10	105830254	Silent	SNP	G	TCGA-DV-5566-01A-01D-1534-10		105830254	29704493	19	35062											
OR5T2	219464	hgsc.bcm.edu	37	11	55999588	55999588	+	Silent	SNP	T	T	C	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	C	55999588	T	C	55999588	2	2	597	1	0	0	0	0	0	0	0	1	11189	1855	64	3		3	OR5T2	11	55999588	Silent	SNP	T	TCGA-DV-5566-01A-01D-1534-10		55999588	79006928	20	35063											
MMP8	4317	hgsc.bcm.edu;ucsc.edu	37	11	102593358	102593358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	102593358	G	A	102593358	3	1	597	1	0	0	0	0	1	0	0	0	9675	942	33	2	1290	2	MMP8	11	102593358	Missense_Mutation	SNP	G	TCGA-DV-5566-01A-01D-1534-10	46593770	102593358	32413158	21	35064											
SLCO1B3	28234	hgsc.bcm.edu;ucsc.edu	37	12	21014049	21014049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	21014049	C	T	21014049	3	4	597	1	0	0	0	0	1	0	0	0	14737	478	17	2	472	2	SLCO1B3	12	21014049	Missense_Mutation	SNP	C	TCGA-DV-5566-01A-01D-1534-10		21014049	112837846	22	35065											
GALNT6	11226	hgsc.bcm.edu;ucsc.edu	37	12	51758021	51758021	+	Silent	SNP	G	G	C	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	C	51758021	G	C	51758021	2	2	597	1	0	0	0	0	0	0	0	1	6224	1103	39	4		4	GALNT6	12	51758021	Silent	SNP	G	TCGA-DV-5566-01A-01D-1534-10	30743972	51758021	82093874	23	35066											
KRT6A	3853	hgsc.bcm.edu	37	12	52881649	52881649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	C	52881649	T	C	52881649	3	2	597	1	0	0	0	0	1	0	0	0	8487	1406	49	3	148	3	KRT6A	12	52881649	Missense_Mutation	SNP	T	TCGA-DV-5566-01A-01D-1534-10	1123628	52881649	80970246	24	35067											
SACS	26278	hgsc.bcm.edu;ucsc.edu	37	13	23906942	23906942	+	Silent	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	23906942	G	A	23906942	2	1	597	1	0	0	0	0	0	0	0	1	13817	1281	45	2		2	SACS	13	23906942	Silent	SNP	G	TCGA-DV-5566-01A-01D-1534-10		23906942	91262936	25	35068											
SUGT1	10910	hgsc.bcm.edu;ucsc.edu	37	13	53239772	53239772	+	Silent	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	53239772	G	A	53239772	2	1	597	1	0	0	0	0	0	0	0	1	15381	1275	44	2		2	SUGT1	13	53239772	Silent	SNP	G	TCGA-DV-5566-01A-01D-1534-10	29332830	53239772	61930106	26	35069											
PSMA6	5687	hgsc.bcm.edu;ucsc.edu	37	14	35777217	35777217	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	C	35777217	A	C	35777217	3	2	597	1	0	0	0	0	1	0	0	0	12681	449	16	5	100	5	PSMA6	14	35777217	Missense_Mutation	SNP	A	TCGA-DV-5566-01A-01D-1534-10		35777217	71572323	27	35070											
PSKH1	5681	hgsc.bcm.edu;ucsc.edu	37	16	67942857	67942857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	67942857	G	A	67942857	3	1	597	1	0	0	0	0	1	0	0	0	12674	1348	47	2	207	2	PSKH1	16	67942857	Missense_Mutation	SNP	G	TCGA-DV-5566-01A-01D-1534-10		67942857	22411896	28	35071											
TNFRSF13B	23495	hgsc.bcm.edu;ucsc.edu	37	17	16852092	16852092	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	G	16852092	C	G	16852092	3	3	597	1	0	0	0	0	1	0	0	0	16299	506	18	4	488	4	TNFRSF13B	17	16852092	Missense_Mutation	SNP	C	TCGA-DV-5566-01A-01D-1534-10		16852092	64343118	29	35072											
IKZF3	22806	hgsc.bcm.edu;ucsc.edu	37	17	37948930	37948930	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	37948930	A	T	37948930	3	4	597	1	0	0	0	0	1	0	0	0	7623	446	16	5	1129	5	IKZF3	17	37948930	Missense_Mutation	SNP	A	TCGA-DV-5566-01A-01D-1534-10	21096838	37948930	43246280	30	35073											
KRT12	3859	hgsc.bcm.edu;ucsc.edu	37	17	39021185	39021185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	39021185	C	A	39021185	3	1	597	1	0	0	0	0	1	0	0	0	8456	739	26	4	828	4	KRT12	17	39021185	Missense_Mutation	SNP	C	TCGA-DV-5566-01A-01D-1534-10	1072255	39021185	42174025	31	35074											
CD300LF	146722	hgsc.bcm.edu;ucsc.edu	37	17	72700848	72700848	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	72700848	T	A	72700848	4	1	597	1	0	0	0	0	0	1	0	0	3003	1792	62	5	745	5	CD300LF	17	72700848	Nonsense_Mutation	SNP	T	TCGA-DV-5566-01A-01D-1534-10	33679663	72700848	8494362	32	35075											
QTRT1	81890	hgsc.bcm.edu	37	19	10818183	10818183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	10818183	C	T	10818183	3	4	597	1	0	0	0	0	1	0	0	0	12898	652	23	1	556	1	QTRT1	19	10818183	Missense_Mutation	SNP	C	TCGA-DV-5566-01A-01D-1534-10		10818183	48310800	33	35076											
ZNF540	163255	hgsc.bcm.edu;ucsc.edu	37	19	38103228	38103228	+	Silent	SNP	T	T	C	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	C	38103228	T	C	38103228	2	2	597	1	0	0	0	0	0	0	0	1	17987	1403	49	3		3	ZNF540	19	38103228	Silent	SNP	T	TCGA-DV-5566-01A-01D-1534-10	27285045	38103228	21025755	34	35077											
ZNF606	80095	hgsc.bcm.edu;ucsc.edu	37	19	58490014	58490014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	58490014	T	A	58490014	3	1	597	1	0	0	0	0	1	0	0	0	18044	1722	60	5	348	5	ZNF606	19	58490014	Missense_Mutation	SNP	T	TCGA-DV-5566-01A-01D-1534-10	20386786	58490014	638969	35	35078											
DSN1	79980	hgsc.bcm.edu;ucsc.edu	37	20	35381212	35381212	+	Silent	SNP	A	A	T	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	T	35381212	A	T	35381212	2	4	597	1	0	0	0	0	0	0	0	1	4782	175	7	5		5	DSN1	20	35381212	Silent	SNP	A	TCGA-DV-5566-01A-01D-1534-10		35381212	27644308	36	35079											
ACO2	50	hgsc.bcm.edu;ucsc.edu	37	22	41914522	41914522	+	Silent	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	41914522	G	A	41914522	2	1	597	1	0	0	0	0	0	0	0	1	147	1339	47	2		2	ACO2	22	41914522	Silent	SNP	G	TCGA-DV-5566-01A-01D-1534-10		41914522	9390044	37	35080											
MAP3K15	389840	hgsc.bcm.edu;ucsc.edu	37	X	19398361	19398361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	C	19398361	G	C	19398361	3	2	597	1	0	0	0	0	1	0	0	0	9256	1252	44	4	1519	4	MAP3K15	23	19398361	Missense_Mutation	SNP	G	TCGA-DV-5566-01A-01D-1534-10		19398361	135872199	38	35081											
PNCK	139728	hgsc.bcm.edu;ucsc.edu	37	X	152936428	152936428	+	Silent	SNP	G	G	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	152936428	G	A	152936428	2	1	597	1	0	0	0	0	0	0	0	1	12152	933	33	2		2	PNCK	23	152936428	Silent	SNP	G	TCGA-DV-5566-01A-01D-1534-10	133538067	152936428	2334132	39	35082											
FLNA	2316	hgsc.bcm.edu;ucsc.edu	37	X	153583340	153583340	+	Silent	SNP	C	C	A	novel		TCGA-DV-5566-01A-01D-1534-10	TCGA-DV-5566-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39a321cd-dbdf-474b-aead-6e69795470e0	cef01d29-8954-400d-b504-33ce7cc529ab	A	153583340	C	A	153583340	2	1	597	1	0	0	0	0	0	0	0	1	5940	755	27	4		4	FLNA	23	153583340	Silent	SNP	C	TCGA-DV-5566-01A-01D-1534-10	646912	153583340	1687220	40	35083											
MIA3	375056	hgsc.bcm.edu;ucsc.edu	37	1	222802075	222802075	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	T	222802075	A	T	222802075	3	4	598	1	0	0	0	0	1	0	0	0	9572	130	5	5	1527	5	MIA3	1	222802075	Missense_Mutation	SNP	A	TCGA-DV-5568-01A-01D-1534-10		222802075	26448546	1	35084											
SLCO4C1	353189	hgsc.bcm.edu;ucsc.edu	37	5	101575087	101575087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	C	101575087	T	C	101575087	3	2	598	1	0	0	0	0	1	0	0	0	14743	1493	52	3	300	3	SLCO4C1	5	101575087	Missense_Mutation	SNP	T	TCGA-DV-5568-01A-01D-1534-10		101575087	79340173	2	35085											
SRRT	51593	hgsc.bcm.edu;ucsc.edu	37	7	100479850	100479850	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	C	100479850	A	C	100479850	3	2	598	1	0	0	0	0	1	0	0	0	15184	14	1	5	589	5	SRRT	7	100479850	Missense_Mutation	SNP	A	TCGA-DV-5568-01A-01D-1534-10		100479850	58658813	3	35086											
ZFHX4	79776	hgsc.bcm.edu;ucsc.edu	37	8	77762484	77762484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	G	77762484	C	G	77762484	3	3	598	1	0	0	0	0	1	0	0	0	17647	739	26	4	3880	4	ZFHX4	8	77762484	Missense_Mutation	SNP	C	TCGA-DV-5568-01A-01D-1534-10		77762484	68601538	4	35087											
PTEN	5728	hgsc.bcm.edu;ucsc.edu	37	10	89711910	89711910	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	G	89711910	T	G	89711910	4	3	598	1	0	0	0	0	0	1	0	0	12748	1500	52	5	550	5	PTEN	10	89711910	Nonsense_Mutation	SNP	T	TCGA-DV-5568-01A-01D-1534-10		89711910	45822837	5	35088											
STARD13	90627	hgsc.bcm.edu;ucsc.edu	37	13	33716508	33716508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	A	33716508	C	A	33716508	3	1	598	1	0	0	0	0	1	0	0	0	15268	884	31	4	3059	4	STARD13	13	33716508	Missense_Mutation	SNP	C	TCGA-DV-5568-01A-01D-1534-10		33716508	81453370	6	35089											
OR4M1	441670	hgsc.bcm.edu	37	14	20249071	20249071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	C	20249071	T	C	20249071	3	2	598	1	0	0	0	0	1	0	0	0	11082	1764	61	3	592	3	OR4M1	14	20249071	Missense_Mutation	SNP	T	TCGA-DV-5568-01A-01D-1534-10		20249071	87100469	7	35090											
ARHGAP5	394	hgsc.bcm.edu;ucsc.edu	37	14	32562855	32562855	+	Missense_Mutation	SNP	A	A	T	rs141239257	alternate_allele	TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	T	32562855	A	T	32562855	3	4	598	1	0	0	0	0	1	0	0	0	886	101	4	5	2982	5	ARHGAP5	14	32562855	Missense_Mutation	SNP	A	TCGA-DV-5568-01A-01D-1534-10	12313784	32562855	74786685	8	35091											
PLEKHG3	26030	hgsc.bcm.edu;ucsc.edu	37	14	65207861	65207861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	T	65207861	G	T	65207861	3	4	598	1	0	0	0	0	1	0	0	0	12077	933	33	4	1508	4	PLEKHG3	14	65207861	Missense_Mutation	SNP	G	TCGA-DV-5568-01A-01D-1534-10	32645006	65207861	42141679	9	35092											
CHRNB4	1143	hgsc.bcm.edu;ucsc.edu	37	15	78922278	78922278	+	Silent	SNP	C	C	T	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	T	78922278	C	T	78922278	2	4	598	1	0	0	0	0	0	0	0	1	3395	842	30	2		2	CHRNB4	15	78922278	Silent	SNP	C	TCGA-DV-5568-01A-01D-1534-10		78922278	23609114	10	35093											
RHOT2	89941	hgsc.bcm.edu;ucsc.edu	37	16	720318	720318	+	Silent	SNP	C	C	T	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	T	720318	C	T	720318	2	4	598	1	0	0	0	0	0	0	0	1	13357	581	21	2		2	RHOT2	16	720318	Silent	SNP	C	TCGA-DV-5568-01A-01D-1534-10		720318	89634435	11	35094											
DSG2	1829	hgsc.bcm.edu;ucsc.edu	37	18	29101062	29101062	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	G	29101062	C	G	29101062	3	3	598	1	0	0	0	0	1	0	0	0	4779	811	28	4	397	4	DSG2	18	29101062	Missense_Mutation	SNP	C	TCGA-DV-5568-01A-01D-1534-10		29101062	48976186	12	35095											
AIFM1	9131	hgsc.bcm.edu	37	X	129270128	129270129	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DV-5568-01A-01D-1534-10	TCGA-DV-5568-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ecb100d4-24da-40d9-aee1-2901cf3a655a	e16d4001-e9a2-4872-9226-d48dee1c1349	C	129270129	-	C	129270128	7	5	598	1	0	1	1	0	0	0	0	0	426	1190	42	0	664	0	AIFM1	23	129270128	Frame_Shift_Ins	INS	-	TCGA-DV-5568-01A-01D-1534-10		129270128	26000432	13	35096											
GJA5	2702	hgsc.bcm.edu;ucsc.edu	37	1	147231205	147231205	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	A	147231205	C	A	147231205	4	1	599	1	0	0	0	0	0	1	0	0	6411	835	29	4	938	4	GJA5	1	147231205	Nonsense_Mutation	SNP	C	TCGA-DV-5569-01A-01D-1534-10		147231205	102019416	1	35097	458	2									
GJA5	2702	hgsc.bcm.edu;ucsc.edu	37	1	147231208	147231208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	T	147231208	C	T	147231208	3	4	599	1	0	0	0	0	1	0	0	0	6411	855	30	2	941	2	GJA5	1	147231208	Missense_Mutation	SNP	C	TCGA-DV-5569-01A-01D-1534-10	3	147231208	102019413	2	35098	458	2									
SNRNP200	23020	hgsc.bcm.edu;ucsc.edu	37	2	96945256	96945256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	T	96945256	C	T	96945256	3	4	599	1	0	0	0	0	1	0	0	0	14865	739	26	2	1384	2	SNRNP200	2	96945256	Missense_Mutation	SNP	C	TCGA-DV-5569-01A-01D-1534-10		96945256	146254117	3	35099											
ANKRD36	375248	hgsc.bcm.edu	37	2	97817617	97817617	+	Missense_Mutation	SNP	T	T	C	rs77391458	bycluster;byfrequency	TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	C	97817617	T	C	97817617	3	2	599	1	0	0	0	0	1	0	0	0	665	1507	52	3	1153	3	ANKRD36	2	97817617	Missense_Mutation	SNP	T	TCGA-DV-5569-01A-01D-1534-10	872361	97817617	145381756	4	35100											
CCDC71	64925	hgsc.bcm.edu;ucsc.edu	37	3	49200640	49200641	+	In_Frame_Ins	INS	-	-	TTGGCC	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	TTGGCC	49200641	-	TTGGCC	49200640	7	5	599	1	0	1	1	0	0	0	0	0	2846	1606	56	0	405	0	CCDC71	3	49200640	In_Frame_Ins	INS	-	TCGA-DV-5569-01A-01D-1534-10		49200640	148821790	5	35101											
CAMK2D	817	hgsc.bcm.edu;ucsc.edu	37	4	114378599	114378599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	A	114378599	C	A	114378599	3	1	599	1	0	0	0	0	1	0	0	0	2603	855	30	4	194	4	CAMK2D	4	114378599	Missense_Mutation	SNP	C	TCGA-DV-5569-01A-01D-1534-10		114378599	76775677	6	35102											
HNRNPH1	3187	hgsc.bcm.edu;ucsc.edu	37	5	179043167	179043167	+	Silent	SNP	G	G	A	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	A	179043167	G	A	179043167	2	1	599	1	0	0	0	0	0	0	0	1	7273	1140	40	1		1	HNRNPH1	5	179043167	Silent	SNP	G	TCGA-DV-5569-01A-01D-1534-10		179043167	1872093	7	35103											
BTNL3	10917	hgsc.bcm.edu;ucsc.edu	37	5	180431709	180431709	+	Intron	SNP	C	C	G	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	G	180431709	C	G	180431709	1	3	599	0	1	0	0	0	0	0	0	0	1568	580	20	4		4	BTNL3	5	180431709	Intron	SNP	C	TCGA-DV-5569-01A-01D-1534-10	1388542	180431709	483551	8	35104											
SMPD2	6610	hgsc.bcm.edu;ucsc.edu	37	6	109763241	109763241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	G	109763241	A	G	109763241	3	3	599	1	0	0	0	0	1	0	0	0	14818	217	8	3	303	3	SMPD2	6	109763241	Missense_Mutation	SNP	A	TCGA-DV-5569-01A-01D-1534-10		109763241	61351826	9	35105											
TAX1BP1	8887	hgsc.bcm.edu;ucsc.edu	37	7	27788296	27788296	+	Silent	SNP	T	T	G	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	G	27788296	T	G	27788296	2	3	599	1	0	0	0	0	0	0	0	1	15606	1625	57	5		5	TAX1BP1	7	27788296	Silent	SNP	T	TCGA-DV-5569-01A-01D-1534-10		27788296	131350367	10	35106											
RGS22	26166	hgsc.bcm.edu	37	8	101076166	101076180	+	In_Frame_Del	DEL	TCTTCTTCTTCTCCT	TCTTCTTCTTCTCCT	-	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	TCTTCTTCTTCTCCT	TCTTCTTCTTCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	-	101076180	TCTTCTTCTTCTCCT	-	101076166	7	5	599	1	0	1	0	1	0	0	0	0	13318	1551	54	0	3044	0	RGS22	8	101076166	In_Frame_Del	DEL	TCTTCTTCTTCTCCT	TCGA-DV-5569-01A-01D-1534-10		101076166	45287856	11	35107											
MYOF	26509	hgsc.bcm.edu;ucsc.edu	37	10	95139669	95139669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	T	95139669	C	T	95139669	3	4	599	1	0	0	0	0	1	0	0	0	10096	565	20	2	4369	2	MYOF	10	95139669	Missense_Mutation	SNP	C	TCGA-DV-5569-01A-01D-1534-10		95139669	40395078	12	35108											
MUC5B	727897	hgsc.bcm.edu	37	11	1272694	1272694	+	Missense_Mutation	SNP	G	G	A	rs191989562	by1000genomes	TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	A	1272694	G	A	1272694	3	1	599	1	0	0	0	0	1	0	0	0	9986	1116	39	1	14715	1	MUC5B	11	1272694	Missense_Mutation	SNP	G	TCGA-DV-5569-01A-01D-1534-10		1272694	133733822	13	35109											
SLC22A25	387601	hgsc.bcm.edu;ucsc.edu	37	11	62985134	62985134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	A	62985134	G	A	62985134	3	1	599	1	0	0	0	0	1	0	0	0	14467	1174	41	2	1091	2	SLC22A25	11	62985134	Missense_Mutation	SNP	G	TCGA-DV-5569-01A-01D-1534-10	61712440	62985134	72021382	14	35110											
DYNC2H1	79659	hgsc.bcm.edu;ucsc.edu	37	11	103229004	103229004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	G	103229004	A	G	103229004	3	3	599	1	0	0	0	0	1	0	0	0	4848	217	8	3	12428	3	DYNC2H1	11	103229004	Missense_Mutation	SNP	A	TCGA-DV-5569-01A-01D-1534-10	40243870	103229004	31777512	15	35111											
DHRS4L2	317749	hgsc.bcm.edu	37	14	24470690	24470691	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	A	24470691	-	A	24470690	7	5	599	1	0	1	1	0	0	0	0	0	4496	1580	55	0	651	0	DHRS4L2	14	24470690	Frame_Shift_Ins	INS	-	TCGA-DV-5569-01A-01D-1534-10		24470690	82878850	16	35112											
C14orf49	0	hgsc.bcm.edu;ucsc.edu	37	14	95932291	95932291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	T	95932291	C	T	95932291	3	4	599	1	0	0	0	0	1	0	0	0	1778	884	31	1	2383	1	C14orf49	14	95932291	Missense_Mutation	SNP	C	TCGA-DV-5569-01A-01D-1534-10	71461601	95932291	11417249	17	35113											
NCOR1	9611	hgsc.bcm.edu	37	17	15974762	15974762	+	Silent	SNP	G	G	A	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	A	15974762	G	A	15974762	2	1	599	1	0	0	0	0	0	0	0	1	10242	1161	41	2		2	NCOR1	17	15974762	Silent	SNP	G	TCGA-DV-5569-01A-01D-1534-10		15974762	65220448	18	35114											
ATAD5	79915	hgsc.bcm.edu;ucsc.edu	37	17	29161956	29161961	+	In_Frame_Del	DEL	CAATGT	CAATGT	-	rs72427574	bycluster;by1000genomes	TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	CAATGT	CAATGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	-	29161961	CAATGT	-	29161956	7	5	599	1	0	1	0	1	0	0	0	0	1076	478	17	0	863	0	ATAD5	17	29161956	In_Frame_Del	DEL	CAATGT	TCGA-DV-5569-01A-01D-1534-10	13187194	29161956	52033254	19	35115											
TTLL6	284076	hgsc.bcm.edu;ucsc.edu	37	17	46882287	46882303	+	Frame_Shift_Del	DEL	CTTTCCAAAGTCGGGCA	CTTTCCAAAGTCGGGCA	-	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	CTTTCCAAAGTCGGGCA	CTTTCCAAAGTCGGGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	-	46882303	CTTTCCAAAGTCGGGCA	-	46882287	7	5	599	1	0	1	0	1	0	0	0	0	16743	797	28	0	2642	0	TTLL6	17	46882287	Frame_Shift_Del	DEL	CTTTCCAAAGTCGGGCA	TCGA-DV-5569-01A-01D-1534-10	17720331	46882287	34312923	20	35116											
MUC16	94025	hgsc.bcm.edu	37	19	9018158	9018158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	T	9018158	A	T	9018158	3	4	599	1	0	0	0	0	1	0	0	0	9980	304	11	5	5983	5	MUC16	19	9018158	Missense_Mutation	SNP	A	TCGA-DV-5569-01A-01D-1534-10		9018158	50110825	21	35117											
BGN	633	hgsc.bcm.edu;ucsc.edu	37	X	152773750	152773750	+	Silent	SNP	C	C	T	novel		TCGA-DV-5569-01A-01D-1534-10	TCGA-DV-5569-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	efb1fd3e-9e43-426c-a5d2-3d58edb3dc49	5d5cc5e6-23a7-4fd8-9a5d-76dc79fbe327	T	152773750	C	T	152773750	2	4	599	1	0	0	0	0	0	0	0	1	1418	535	19	1		1	BGN	23	152773750	Silent	SNP	C	TCGA-DV-5569-01A-01D-1534-10		152773750	2496810	22	35118											
DEM1	0	hgsc.bcm.edu	37	1	40981245	40981246	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	G	40981246	-	G	40981245	7	5	600	1	0	1	1	0	0	0	0	0	4427	747	26	0	1031	0	DEM1	1	40981245	Frame_Shift_Ins	INS	-	TCGA-DV-5574-01A-01D-1534-10		40981245	208269376	1	35119											
RFX5	5993	hgsc.bcm.edu	37	1	151317012	151317012	+	Silent	SNP	C	C	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	151317012	C	A	151317012	2	1	600	1	0	0	0	0	0	0	0	1	13279	869	30	4		4	RFX5	1	151317012	Silent	SNP	C	TCGA-DV-5574-01A-01D-1534-10	110335767	151317012	97933609	2	35120											
PLEKHA3	65977	hgsc.bcm.edu;ucsc.edu	37	2	179368497	179368497	+	Silent	SNP	C	C	T	rs139167699		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	T	179368497	C	T	179368497	2	4	600	1	0	0	0	0	0	0	0	1	12064	564	20	2		2	PLEKHA3	2	179368497	Silent	SNP	C	TCGA-DV-5574-01A-01D-1534-10		179368497	63830876	3	35121											
CUL3	8452	hgsc.bcm.edu	37	2	225422498	225422498	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	225422498	T	A	225422498	3	1	600	1	0	0	0	0	1	0	0	0	4058	1783	62	5	2224	5	CUL3	2	225422498	Missense_Mutation	SNP	T	TCGA-DV-5574-01A-01D-1534-10	46054001	225422498	17776875	4	35122											
WDR69	164781	hgsc.bcm.edu	37	2	228754594	228754594	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	T	228754594	G	T	228754594	4	4	600	1	0	0	0	0	0	1	0	0	17331	943	33	4	146	4	WDR69	2	228754594	Nonsense_Mutation	SNP	G	TCGA-DV-5574-01A-01D-1534-10	3332096	228754594	14444779	5	35123											
CNTN6	27255	hgsc.bcm.edu;ucsc.edu	37	3	1269542	1269542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	C	1269542	T	C	1269542	3	2	600	1	0	0	0	0	1	0	0	0	3647	1754	61	3	233	3	CNTN6	3	1269542	Missense_Mutation	SNP	T	TCGA-DV-5574-01A-01D-1534-10		1269542	196752888	6	35124											
LMOD3	56203	hgsc.bcm.edu;ucsc.edu	37	3	69169051	69169056	+	In_Frame_Del	DEL	TCTTCT	TCTTCT	-	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	TCTTCT	TCTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	-	69169056	TCTTCT	-	69169051	7	5	600	1	0	1	0	1	0	0	0	0	8865	1435	50	0	1235	0	LMOD3	3	69169051	In_Frame_Del	DEL	TCTTCT	TCGA-DV-5574-01A-01D-1534-10	67899509	69169051	128853379	7	35125											
MUC4	4585	hgsc.bcm.edu	37	3	195513772	195513772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	195513772	G	A	195513772	3	1	600	1	0	0	0	0	1	0	0	0	9985	1294	45	2		2	MUC4	3	195513772	Missense_Mutation	SNP	G	TCGA-DV-5574-01A-01D-1534-10	126344721	195513772	2508658	8	35126											
KIF4B	285643	hgsc.bcm.edu	37	5	154393562	154393562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	T	154393562	C	T	154393562	3	4	600	1	0	0	0	0	1	0	0	0	8311	855	30	2	145	2	KIF4B	5	154393562	Missense_Mutation	SNP	C	TCGA-DV-5574-01A-01D-1534-10		154393562	26521698	9	35127											
CCM2	83605	hgsc.bcm.edu;ucsc.edu	37	7	45067353	45067353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	G	45067353	T	G	45067353	3	3	600	1	0	0	0	0	1	0	0	0	2910	1493	52	5	86	5	CCM2	7	45067353	Missense_Mutation	SNP	T	TCGA-DV-5574-01A-01D-1534-10		45067353	114071310	10	35128											
SBDS	51119	hgsc.bcm.edu;ucsc.edu	37	7	66453385	66453385	+	Silent	SNP	T	T	C	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	C	66453385	T	C	66453385	2	2	600	1	0	0	0	0	0	0	0	1	13870	1509	53	3		3	SBDS	7	66453385	Silent	SNP	T	TCGA-DV-5574-01A-01D-1534-10	21386032	66453385	92685278	11	35129											
UBR5	51366	hgsc.bcm.edu	37	8	103274282	103274282	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	T	103274282	A	T	103274282	3	4	600	1	0	0	0	0	1	0	0	0	16917	14	1	5	716	5	UBR5	8	103274282	Missense_Mutation	SNP	A	TCGA-DV-5574-01A-01D-1534-10		103274282	43089740	12	35130											
NOXA1	10811	hgsc.bcm.edu;ucsc.edu	37	9	140320783	140320783	+	Splice_Site	SNP	G	G	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	140320783	G	A	140320783	5	1	600	1	0	0	0	0	0	0	1	0	10567	1275	44	2	267	2	NOXA1	9	140320783	Splice_Site	SNP	G	TCGA-DV-5574-01A-01D-1534-10		140320783	892648	13	35131											
SLC16A9	220963	hgsc.bcm.edu	37	10	61412636	61412653	+	In_Frame_Del	DEL	CCTCCCAGCAGGACGCAG	CCTCCCAGCAGGACGCAG	-	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	CCTCCCAGCAGGACGCAG	CCTCCCAGCAGGACGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	-	61412653	CCTCCCAGCAGGACGCAG	-	61412636	7	5	600	1	0	1	0	1	0	0	0	0	14428	507	18	0	109	0	SLC16A9	10	61412636	In_Frame_Del	DEL	CCTCCCAGCAGGACGCAG	TCGA-DV-5574-01A-01D-1534-10		61412636	74122111	14	35132											
SBF2	81846	hgsc.bcm.edu	37	11	9875241	9875241	+	Silent	SNP	A	A	C	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	C	9875241	A	C	9875241	2	2	600	1	0	0	0	0	0	0	0	1	13872	175	7	5		5	SBF2	11	9875241	Silent	SNP	A	TCGA-DV-5574-01A-01D-1534-10		9875241	125131275	15	35133											
AVIL	10677	hgsc.bcm.edu	37	12	58207097	58207097	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	58207097	T	A	58207097	3	1	600	1	0	0	0	0	1	0	0	0	1227	1667	58	5	2276	5	AVIL	12	58207097	Missense_Mutation	SNP	T	TCGA-DV-5574-01A-01D-1534-10		58207097	75644798	16	35134											
TSPAN8	7103	hgsc.bcm.edu	37	12	71526584	71526584	+	Silent	SNP	G	G	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	71526584	G	A	71526584	2	1	600	1	0	0	0	0	0	0	0	1	16665	1277	45	2		2	TSPAN8	12	71526584	Silent	SNP	G	TCGA-DV-5574-01A-01D-1534-10	13319487	71526584	62325311	17	35135											
PABPC3	5042	hgsc.bcm.edu	37	13	25671206	25671206	+	Silent	SNP	A	A	G	rs76614854		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	G	25671206	A	G	25671206	2	3	600	1	0	0	0	0	0	0	0	1	11372	330	12	3		3	PABPC3	13	25671206	Silent	SNP	A	TCGA-DV-5574-01A-01D-1534-10		25671206	89498672	18	35136											
PABPC3	5042	hgsc.bcm.edu	37	13	25671742	25671742	+	Missense_Mutation	SNP	G	G	A	rs140135080	byfrequency	TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	25671742	G	A	25671742	3	1	600	1	0	0	0	0	1	0	0	0	11372	1058	37	1	1408	1	PABPC3	13	25671742	Missense_Mutation	SNP	G	TCGA-DV-5574-01A-01D-1534-10	536	25671742	89498136	19	35137											
DICER1	23405	hgsc.bcm.edu	37	14	95597894	95597894	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	T	95597894	A	T	95597894	3	4	600	1	0	0	0	0	1	0	0	0	4523	214	8	5	5474	5	DICER1	14	95597894	Missense_Mutation	SNP	A	TCGA-DV-5574-01A-01D-1534-10		95597894	11751646	20	35138											
PALB2	79728	hgsc.bcm.edu	37	16	23647298	23647298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	23647298	G	A	23647298	3	1	600	1	0	0	0	0	1	0	0	0	11413	1294	45	2	3031	2	PALB2	16	23647298	Missense_Mutation	SNP	G	TCGA-DV-5574-01A-01D-1534-10		23647298	66707455	21	35139											
BPIL3	0	hgsc.bcm.edu;ucsc.edu	37	20	31627270	31627270	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	C	31627270	A	C	31627270	3	2	600	1	0	0	0	0	1	0	0	0	1495	333	12	5	1056	5	BPIL3	20	31627270	Missense_Mutation	SNP	A	TCGA-DV-5574-01A-01D-1534-10		31627270	31398250	22	35140											
PIWIL3	440822	hgsc.bcm.edu;ucsc.edu	37	22	25155858	25155869	+	In_Frame_Del	DEL	TGCTCCTCCTCT	TGCTCCTCCTCT	-	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	TGCTCCTCCTCT	TGCTCCTCCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	-	25155869	TGCTCCTCCTCT	-	25155858	7	5	600	1	0	1	0	1	0	0	0	0	11966	1567	55	0	2523	0	PIWIL3	22	25155858	In_Frame_Del	DEL	TGCTCCTCCTCT	TCGA-DV-5574-01A-01D-1534-10		25155858	26148708	23	35141											
SYN3	8224	hgsc.bcm.edu;ucsc.edu	37	22	32934079	32934079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	32934079	C	A	32934079	3	1	600	1	0	0	0	0	1	0	0	0	15454	623	22	4	831	4	SYN3	22	32934079	Missense_Mutation	SNP	C	TCGA-DV-5574-01A-01D-1534-10	7778221	32934079	18370487	24	35142											
RPGR	6103	hgsc.bcm.edu;ucsc.edu	37	X	38144799	38144799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	38144799	C	A	38144799	3	1	600	1	0	0	0	0	1	0	0	0	13561	825	29	4	568	4	RPGR	23	38144799	Missense_Mutation	SNP	C	TCGA-DV-5574-01A-01D-1534-10		38144799	117125761	25	35143											
SLC25A5	292	hgsc.bcm.edu;ucsc.edu	37	X	118603864	118603864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	118603864	G	A	118603864	3	1	600	1	0	0	0	0	1	0	0	0	14525	1203	42	2	358	2	SLC25A5	23	118603864	Missense_Mutation	SNP	G	TCGA-DV-5574-01A-01D-1534-10	80459065	118603864	36666696	26	35144											
MAGEC1	9947	hgsc.bcm.edu	37	X	140995291	140995291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5574-01A-01D-1534-10	TCGA-DV-5574-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84a62ab5-e442-4358-9d24-572cdf7eb44e	d20fbb8f-5cd8-4dba-9d7e-8840569b2809	A	140995291	G	A	140995291	3	1	600	1	0	0	0	0	1	0	0	0	9187	1233	43	2	2107	2	MAGEC1	23	140995291	Missense_Mutation	SNP	G	TCGA-DV-5574-01A-01D-1534-10	22391427	140995291	14275269	27	35145											
RNPC3	55599	hgsc.bcm.edu;ucsc.edu	37	1	104070330	104070330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	C	104070330	T	C	104070330	3	2	601	1	0	0	0	0	1	0	0	0	13521	1841	64	3	212	3	RNPC3	1	104070330	Missense_Mutation	SNP	T	TCGA-DV-5575-01A-01D-1534-10		104070330	145180291	1	35146											
HMCN1	83872	hgsc.bcm.edu;ucsc.edu	37	1	185939611	185939611	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	-	185939611	C	-	185939611	7	5	601	1	0	1	0	1	0	0	0	0	7227	565	20	0	2415	0	HMCN1	1	185939611	Frame_Shift_Del	DEL	C	TCGA-DV-5575-01A-01D-1534-10	81869281	185939611	63311010	2	35147											
IGFN1	91156	hgsc.bcm.edu	37	1	201180222	201180222	+	Silent	SNP	G	G	A	rs28465285		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	A	201180222	G	A	201180222	2	1	601	1	0	0	0	0	0	0	0	1	7597	991	35	2		2	IGFN1	1	201180222	Silent	SNP	G	TCGA-DV-5575-01A-01D-1534-10	15240611	201180222	48070399	3	35148			1	69		2	2	22	N	G_A	2.442087e-05
IGFN1	91156	hgsc.bcm.edu	37	1	201180243	201180243	+	Silent	SNP	A	A	G	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	G	201180243	A	G	201180243	2	3	601	1	0	0	0	0	0	0	0	1	7597	417	15	3		3	IGFN1	1	201180243	Silent	SNP	A	TCGA-DV-5575-01A-01D-1534-10	21	201180243	48070378	4	35149			1	69		2	2	22	N	G_A	2.442087e-05
OR2T4	127074	hgsc.bcm.edu	37	1	248525308	248525308	+	Silent	SNP	A	A	G	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	G	248525308	A	G	248525308	2	3	601	1	0	0	0	0	0	0	0	1	11034	175	7	3		3	OR2T4	1	248525308	Silent	SNP	A	TCGA-DV-5575-01A-01D-1534-10	47345065	248525308	725313	5	35150											
ASAP2	8853	hgsc.bcm.edu	37	2	9543400	9543400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	C	9543400	G	C	9543400	3	2	601	1	0	0	0	0	1	0	0	0	1011	942	33	4	3075	4	ASAP2	2	9543400	Missense_Mutation	SNP	G	TCGA-DV-5575-01A-01D-1534-10		9543400	233655973	6	35151											
REV1	51455	hgsc.bcm.edu;ucsc.edu	37	2	100019183	100019183	+	Silent	SNP	T	T	G	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	G	100019183	T	G	100019183	2	3	601	1	0	0	0	0	0	0	0	1	13252	1567	55	5		5	REV1	2	100019183	Silent	SNP	T	TCGA-DV-5575-01A-01D-1534-10	90475783	100019183	143180190	7	35152											
SAG	6295	hgsc.bcm.edu	37	2	234240287	234240287	+	Silent	SNP	G	G	A	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	A	234240287	G	A	234240287	2	1	601	1	0	0	0	0	0	0	0	1	13821	1362	47	2		2	SAG	2	234240287	Silent	SNP	G	TCGA-DV-5575-01A-01D-1534-10	134221104	234240287	8959086	8	35153											
IMPG2	50939	hgsc.bcm.edu;ucsc.edu	37	3	101023037	101023037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	101023037	C	T	101023037	3	4	601	1	0	0	0	0	1	0	0	0	7736	623	22	2	3339	2	IMPG2	3	101023037	Missense_Mutation	SNP	C	TCGA-DV-5575-01A-01D-1534-10		101023037	96999393	9	35154											
TEC	100124696	hgsc.bcm.edu;ucsc.edu	37	4	48139497	48139497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	48139497	G	T	48139497	3	4	601	1	0	0	0	0	1	0	0	0	15754	942	33	4	67	4	TEC	4	48139497	Missense_Mutation	SNP	G	TCGA-DV-5575-01A-01D-1534-10		48139497	143014779	10	35155	459	2									
TEC	100124696	hgsc.bcm.edu;ucsc.edu	37	4	48139499	48139499	+	Silent	SNP	A	A	G	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	G	48139499	A	G	48139499	2	3	601	1	0	0	0	0	0	0	0	1	15754	59	3	3		3	TEC	4	48139499	Silent	SNP	A	TCGA-DV-5575-01A-01D-1534-10	2	48139499	143014777	11	35156	459	2									
IBSP	3381	hgsc.bcm.edu;ucsc.edu	37	4	88732929	88732929	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	C	88732929	G	C	88732929	3	2	601	1	0	0	0	0	1	0	0	0	7482	1174	41	4	843	4	IBSP	4	88732929	Missense_Mutation	SNP	G	TCGA-DV-5575-01A-01D-1534-10	40593430	88732929	102421347	12	35157											
TFR2	7036	hgsc.bcm.edu;ucsc.edu	37	7	100218519	100218519	+	Silent	SNP	C	C	G	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	G	100218519	C	G	100218519	2	3	601	1	0	0	0	0	0	0	0	1	15823	755	27	4		4	TFR2	7	100218519	Silent	SNP	C	TCGA-DV-5575-01A-01D-1534-10		100218519	58920144	13	35158											
RIMS2	9699	hgsc.bcm.edu;ucsc.edu	37	8	105025708	105025708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	105025708	C	T	105025708	3	4	601	1	0	0	0	0	1	0	0	0	13381	855	30	2	3349	2	RIMS2	8	105025708	Missense_Mutation	SNP	C	TCGA-DV-5575-01A-01D-1534-10		105025708	41338314	14	35159											
TATDN1	83940	hgsc.bcm.edu;ucsc.edu	37	8	125527986	125527986	+	Splice_Site	SNP	C	C	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	125527986	C	T	125527986	5	4	601	1	0	0	0	0	0	0	1	0	15603	579	20	2	531	2	TATDN1	8	125527986	Splice_Site	SNP	C	TCGA-DV-5575-01A-01D-1534-10	20502278	125527986	20836036	15	35160											
GPR172A	0	hgsc.bcm.edu	37	8	145584534	145584535	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	G	145584535	-	G	145584534	7	5	601	1	0	1	1	0	0	0	0	0	6676	755	27	0	1211	0	GPR172A	8	145584534	Frame_Shift_Ins	INS	-	TCGA-DV-5575-01A-01D-1534-10	20056548	145584534	779488	16	35161											
KIAA0020	9933	hgsc.bcm.edu;ucsc.edu	37	9	2807851	2807851	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	2807851	A	T	2807851	3	4	601	1	0	0	0	0	1	0	0	0	8159	188	7	5	177	5	KIAA0020	9	2807851	Missense_Mutation	SNP	A	TCGA-DV-5575-01A-01D-1534-10		2807851	138405580	17	35162											
POLR1E	64425	hgsc.bcm.edu;ucsc.edu	37	9	37495950	37495950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	37495950	C	T	37495950	3	4	601	1	0	0	0	0	1	0	0	0	12220	838	29	2	749	2	POLR1E	9	37495950	Missense_Mutation	SNP	C	TCGA-DV-5575-01A-01D-1534-10	34688099	37495950	103717481	18	35163											
OR1L4	254973	hgsc.bcm.edu	37	9	125486717	125486717	+	Missense_Mutation	SNP	G	G	A	rs76170289		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	A	125486717	G	A	125486717	3	1	601	1	0	0	0	0	1	0	0	0	10972	1319	46	2	451	2	OR1L4	9	125486717	Missense_Mutation	SNP	G	TCGA-DV-5575-01A-01D-1534-10	87990767	125486717	15726714	19	35164											
USP6NL	9712	hgsc.bcm.edu;ucsc.edu	37	10	11504703	11504703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	C	11504703	T	C	11504703	3	2	601	1	0	0	0	0	1	0	0	0	17099	1638	57	3	266	3	USP6NL	10	11504703	Missense_Mutation	SNP	T	TCGA-DV-5575-01A-01D-1534-10		11504703	124030044	20	35165											
OR52J3	119679	hgsc.bcm.edu	37	11	5068656	5068656	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	5068656	C	T	5068656	4	4	601	1	0	0	0	0	0	1	0	0	11129	876	31	1	903	1	OR52J3	11	5068656	Nonsense_Mutation	SNP	C	TCGA-DV-5575-01A-01D-1534-10		5068656	129937860	21	35166											
HARBI1	283254	hgsc.bcm.edu;ucsc.edu	37	11	46625224	46625224	+	Silent	SNP	G	G	A	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	A	46625224	G	A	46625224	2	1	601	1	0	0	0	0	0	0	0	1	6965	1219	43	2		2	HARBI1	11	46625224	Silent	SNP	G	TCGA-DV-5575-01A-01D-1534-10	41556568	46625224	88381292	22	35167											
USP2	9099	hgsc.bcm.edu;ucsc.edu	37	11	119229755	119229755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	119229755	G	T	119229755	3	4	601	1	0	0	0	0	1	0	0	0	17063	1000	35	4	698	4	USP2	11	119229755	Missense_Mutation	SNP	G	TCGA-DV-5575-01A-01D-1534-10	72604531	119229755	15776761	23	35168											
VSIG10	54621	hgsc.bcm.edu;ucsc.edu	37	12	118511660	118511677	+	In_Frame_Del	DEL	TGATCACCTCGGGCTGGG	TGATCACCTCGGGCTGGG	-	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	TGATCACCTCGGGCTGGG	TGATCACCTCGGGCTGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	-	118511677	TGATCACCTCGGGCTGGG	-	118511660	7	5	601	1	0	1	0	1	0	0	0	0	17235	1464	51	0	579	0	VSIG10	12	118511660	In_Frame_Del	DEL	TGATCACCTCGGGCTGGG	TCGA-DV-5575-01A-01D-1534-10		118511660	15340235	24	35169											
GPC6	10082	hgsc.bcm.edu;ucsc.edu	37	13	95034756	95034756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	G	95034756	C	G	95034756	3	3	601	1	0	0	0	0	1	0	0	0	6609	768	27	4	1267	4	GPC6	13	95034756	Missense_Mutation	SNP	C	TCGA-DV-5575-01A-01D-1534-10		95034756	20135122	25	35170											
DLGAP5	9787	hgsc.bcm.edu;ucsc.edu	37	14	55625420	55625420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	A	55625420	C	A	55625420	3	1	601	1	0	0	0	0	1	0	0	0	4565	855	30	4	966	4	DLGAP5	14	55625420	Missense_Mutation	SNP	C	TCGA-DV-5575-01A-01D-1534-10		55625420	51724120	26	35171											
PRKCH	5583	hgsc.bcm.edu;ucsc.edu	37	14	62014499	62014499	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	-	62014499	G	-	62014499	7	5	601	1	0	1	0	1	0	0	0	0	12523	1277	45	0	1850	0	PRKCH	14	62014499	Frame_Shift_Del	DEL	G	TCGA-DV-5575-01A-01D-1534-10	6389079	62014499	45335041	27	35172											
TMEM85	0	hgsc.bcm.edu;ucsc.edu	37	15	34520009	34520009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	34520009	C	T	34520009	3	4	601	1	0	0	0	0	1	0	0	0	16219	739	26	2	327	2	TMEM85	15	34520009	Missense_Mutation	SNP	C	TCGA-DV-5575-01A-01D-1534-10		34520009	68011383	28	35173											
IQGAP1	8826	hgsc.bcm.edu;ucsc.edu	37	15	91021009	91021009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	T	91021009	G	T	91021009	3	4	601	1	0	0	0	0	1	0	0	0	7821	1203	42	4	3319	4	IQGAP1	15	91021009	Missense_Mutation	SNP	G	TCGA-DV-5575-01A-01D-1534-10	56501000	91021009	11510383	29	35174	460	2									
IQGAP1	8826	hgsc.bcm.edu;ucsc.edu	37	15	91021010	91021010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	A	91021010	C	A	91021010	3	1	601	1	0	0	0	0	1	0	0	0	7821	739	26	4	3320	4	IQGAP1	15	91021010	Missense_Mutation	SNP	C	TCGA-DV-5575-01A-01D-1534-10	1	91021010	11510382	30	35175	460	2									
RAB11FIP3	9727	hgsc.bcm.edu;ucsc.edu	37	16	546818	546826	+	Frame_Shift_Del	DEL	GCACAGTCC	GCACAGTCC	-	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	GCACAGTCC	GCACAGTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	-	546826	GCACAGTCC	-	546818	7	5	601	1	0	1	0	1	0	0	0	0	12908	1334	46	0		0	RAB11FIP3	16	546818	Frame_Shift_Del	DEL	GCACAGTCC	TCGA-DV-5575-01A-01D-1534-10		546818	89807935	31	35176											
KCTD19	146212	hgsc.bcm.edu;ucsc.edu	37	16	67327544	67327545	+	In_Frame_Ins	INS	-	-	GCTCCA	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	GCTCCA	67327545	-	GCTCCA	67327544	7	5	601	1	0	1	1	0	0	0	0	0	8113	871	31	0	679	0	KCTD19	16	67327544	In_Frame_Ins	INS	-	TCGA-DV-5575-01A-01D-1534-10	66780726	67327544	23027209	32	35177											
RAI1	10743	hgsc.bcm.edu	37	17	17700038	17700040	+	In_Frame_Del	DEL	AGG	AGG	-	rs149716029	by1000genomes	TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	-	17700040	AGG	-	17700038	7	5	601	1	0	1	0	1	0	0	0	0	13020	72	3	0	3778	0	RAI1	17	17700038	In_Frame_Del	DEL	AGG	TCGA-DV-5575-01A-01D-1534-10		17700038	63495172	33	35178											
PPAP2C	8612	hgsc.bcm.edu;ucsc.edu	37	19	282291	282291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	G	282291	A	G	282291	3	3	601	1	0	0	0	0	1	0	0	0	12299	304	11	3	314	3	PPAP2C	19	282291	Missense_Mutation	SNP	A	TCGA-DV-5575-01A-01D-1534-10		282291	58846692	34	35179											
EMR2	30817	hgsc.bcm.edu;ucsc.edu	37	19	14877799	14877799	+	Missense_Mutation	SNP	G	G	C	rs74182236		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	C	14877799	G	C	14877799	3	2	601	1	0	0	0	0	1	0	0	0	5107	971	34	4	2057	4	EMR2	19	14877799	Missense_Mutation	SNP	G	TCGA-DV-5575-01A-01D-1534-10	14595508	14877799	44251184	35	35180											
ZNF831	128611	hgsc.bcm.edu	37	20	57769147	57769147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	A	57769147	G	A	57769147	3	1	601	1	0	0	0	0	1	0	0	0	18197	1174	41	2	3075	2	ZNF831	20	57769147	Missense_Mutation	SNP	G	TCGA-DV-5575-01A-01D-1534-10		57769147	5256373	36	35181											
TCEAL6	158931	hgsc.bcm.edu	37	X	101395780	101395781	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	G	101395781	-	G	101395780	7	5	601	1	0	1	1	0	0	0	0	0	15687	1812	63	0	31	0	TCEAL6	23	101395780	Frame_Shift_Ins	INS	-	TCGA-DV-5575-01A-01D-1534-10		101395780	53874780	37	35182											
GPR50	9248	hgsc.bcm.edu;ucsc.edu	37	X	150349558	150349569	+	In_Frame_Del	DEL	CACCACTGGCCA	CACCACTGGCCA	-	rs68058591		TCGA-DV-5575-01A-01D-1534-10	TCGA-DV-5575-10A-01D-1535-10	CACCACTGGCCA	CACCACTGGCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eb2d0a1a-b684-484a-86a4-bd40c8ac7ce8	bf9f5144-b35f-493d-b2b0-e4ebbe29fe88	-	150349569	CACCACTGGCCA	-	150349558	7	5	601	1	0	1	0	1	0	0	0	0	6704	581	21	0	1509	0	GPR50	23	150349558	In_Frame_Del	DEL	CACCACTGGCCA	TCGA-DV-5575-01A-01D-1534-10	48953778	150349558	4921002	38	35183											
ICMT	23463	hgsc.bcm.edu;ucsc.edu	37	1	6295024	6295024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	T	6295024	C	T	6295024	3	4	602	1	0	0	0	0	1	0	0	0	7492	884	31	1	664	1	ICMT	1	6295024	Missense_Mutation	SNP	C	TCGA-DV-5576-01A-01D-1534-10		6295024	242955597	1	35184											
NTRK1	4914	hgsc.bcm.edu;ucsc.edu	37	1	156845424	156845424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	A	156845424	C	A	156845424	3	1	602	1	0	0	0	0	1	0	0	0	10713	477	17	4	1643	4	NTRK1	1	156845424	Missense_Mutation	SNP	C	TCGA-DV-5576-01A-01D-1534-10	150550400	156845424	92405197	2	35185											
CACNA1E	777	hgsc.bcm.edu;ucsc.edu	37	1	181705481	181705481	+	Silent	SNP	G	G	A	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	A	181705481	G	A	181705481	2	1	602	1	0	0	0	0	0	0	0	1	2544	1335	47	2		2	CACNA1E	1	181705481	Silent	SNP	G	TCGA-DV-5576-01A-01D-1534-10	24860057	181705481	67545140	3	35186											
CDCA7	83879	hgsc.bcm.edu;ucsc.edu	37	2	174224187	174224187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	A	174224187	G	A	174224187	3	1	602	1	0	0	0	0	1	0	0	0	3092	1116	39	1	362	1	CDCA7	2	174224187	Missense_Mutation	SNP	G	TCGA-DV-5576-01A-01D-1534-10		174224187	68975186	4	35187											
TTN	7273	hgsc.bcm.edu;ucsc.edu	37	2	179422465	179422465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	T	179422465	C	T	179422465	3	4	602	1	0	0	0	0	1	0	0	0	16747	922	32	2	20503	2	TTN	2	179422465	Missense_Mutation	SNP	C	TCGA-DV-5576-01A-01D-1534-10	5198278	179422465	63776908	5	35188											
BARD1	580	hgsc.bcm.edu;ucsc.edu	37	2	215645503	215645523	+	In_Frame_Del	DEL	TGGTGAAGAACATTCAGGCAA	TGGTGAAGAACATTCAGGCAA	-	rs28997575	bycluster;byfrequency;by1000genomes	TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	TGGTGAAGAACATTCAGGCAA	TGGTGAAGAACATTCAGGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	-	215645523	TGGTGAAGAACATTCAGGCAA	-	215645503	7	5	602	1	0	1	0	1	0	0	0	0	1312	1683	59	0	1270	0	BARD1	2	215645503	In_Frame_Del	DEL	TGGTGAAGAACATTCAGGCAA	TCGA-DV-5576-01A-01D-1534-10	36223038	215645503	27553870	6	35189											
LNP1	348801	hgsc.bcm.edu	37	3	100170598	100170598	+	Silent	SNP	C	C	T	rs78633312		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	T	100170598	C	T	100170598	2	4	602	1	0	0	0	0	0	0	0	1	8870	747	26	2		2	LNP1	3	100170598	Silent	SNP	C	TCGA-DV-5576-01A-01D-1534-10		100170598	97851832	7	35190											
HHLA2	11148	hgsc.bcm.edu	37	3	108081191	108081195	+	Frame_Shift_Del	DEL	CCGAG	CCGAG	-	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	CCGAG	CCGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	-	108081195	CCGAG	-	108081191	7	5	602	1	0	1	0	1	0	0	0	0	7102	507	18	0	1024	0	HHLA2	3	108081191	Frame_Shift_Del	DEL	CCGAG	TCGA-DV-5576-01A-01D-1534-10	7910593	108081191	89941239	8	35191											
HIST1H2BM	8342	hgsc.bcm.edu;ucsc.edu	37	6	27782814	27782832	+	Frame_Shift_Del	DEL	TTTCCACCATGCCTGAACC	TTTCCACCATGCCTGAACC	-	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	TTTCCACCATGCCTGAACC	TTTCCACCATGCCTGAACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	-	27782832	TTTCCACCATGCCTGAACC	-	27782814	7	5	602	1	0	1	0	1	0	0	0	0	7159	1856	64	0		0	HIST1H2BM	6	27782814	Frame_Shift_Del	DEL	TTTCCACCATGCCTGAACC	TCGA-DV-5576-01A-01D-1534-10		27782814	143332253	9	35192											
DPCR1	135656	hgsc.bcm.edu	37	6	30917574	30917574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	G	30917574	A	G	30917574	3	3	602	1	0	0	0	0	1	0	0	0	4714	412	15	3	1339	3	DPCR1	6	30917574	Missense_Mutation	SNP	A	TCGA-DV-5576-01A-01D-1534-10	3134760	30917574	140197493	10	35193											
GPRC6A	222545	hgsc.bcm.edu	37	6	117113761	117113762	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	GG	117113762	-	GG	117113761	7	5	602	1	0	1	1	0	0	0	0	0	6735	224	8	0	459	0	GPRC6A	6	117113761	Frame_Shift_Ins	INS	-	TCGA-DV-5576-01A-01D-1534-10	86196187	117113761	54001306	11	35194											
SAMD9L	219285	hgsc.bcm.edu	37	7	92761054	92761054	+	Missense_Mutation	SNP	G	G	C	rs4729075	alternate_allele	TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	C	92761054	G	C	92761054	3	2	602	1	0	0	0	0	1	0	0	0	13840	1124	39	4	527	4	SAMD9L	7	92761054	Missense_Mutation	SNP	G	TCGA-DV-5576-01A-01D-1534-10		92761054	66377609	12	35195											
AGK	55750	hgsc.bcm.edu;ucsc.edu	37	7	141336815	141336815	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	T	141336815	A	T	141336815	4	4	602	1	0	0	0	0	0	1	0	0	383	363	13	5	762	5	AGK	7	141336815	Nonsense_Mutation	SNP	A	TCGA-DV-5576-01A-01D-1534-10	48575761	141336815	17801848	13	35196											
IFNK	56832	hgsc.bcm.edu	37	9	27524364	27524365	+	Frame_Shift_Ins	INS	-	-	TGTT	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	TGTT	27524365	-	TGTT	27524364	7	5	602	1	0	1	1	0	0	0	0	0	7558	1020	36	0	32	0	IFNK	9	27524364	Frame_Shift_Ins	INS	-	TCGA-DV-5576-01A-01D-1534-10		27524364	113689067	14	35197											
OR4C15	81309	hgsc.bcm.edu	37	11	55322611	55322635	+	Frame_Shift_Del	DEL	TCTCTGAGAACACACAGTTCTGAAG	TCTCTGAGAACACACAGTTCTGAAG	-	rs72140406		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	TCTCTGAGAACACACAGTTCTGAAG	TCTCTGAGAACACACAGTTCTGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	-	55322635	TCTCTGAGAACACACAGTTCTGAAG	-	55322611	7	5	602	1	0	1	0	1	0	0	0	0	11055	1551	54	0	831	0	OR4C15	11	55322611	Frame_Shift_Del	DEL	TCTCTGAGAACACACAGTTCTGAAG	TCGA-DV-5576-01A-01D-1534-10		55322611	79683905	15	35198											
SLC3A2	6520	hgsc.bcm.edu;ucsc.edu	37	11	62650410	62650410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	G	62650410	A	G	62650410	3	3	602	1	0	0	0	0	1	0	0	0	14640	43	2	3	1054	3	SLC3A2	11	62650410	Missense_Mutation	SNP	A	TCGA-DV-5576-01A-01D-1534-10	7327799	62650410	72356106	16	35199											
ADAMTS17	170691	hgsc.bcm.edu;ucsc.edu	37	15	100649280	100649281	+	In_Frame_Ins	INS	-	-	CTCCTT	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	CTCCTT	100649281	-	CTCCTT	100649280	7	5	602	1	0	1	1	0	0	0	0	0	262	275	10	0	1393	0	ADAMTS17	15	100649280	In_Frame_Ins	INS	-	TCGA-DV-5576-01A-01D-1534-10		100649280	1882112	17	35200											
TOP2A	7153	hgsc.bcm.edu;ucsc.edu	37	17	38557157	38557157	+	Missense_Mutation	SNP	C	C	T	rs192926120	by1000genomes	TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	T	38557157	C	T	38557157	3	4	602	1	0	0	0	0	1	0	0	0	16377	536	19	1	2046	1	TOP2A	17	38557157	Missense_Mutation	SNP	C	TCGA-DV-5576-01A-01D-1534-10		38557157	42638053	18	35201											
KRTAP4-1	85285	hgsc.bcm.edu;ucsc.edu	37	17	39341039	39341039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	A	39341039	G	A	39341039	3	1	602	1	0	0	0	0	1	0	0	0	8555	1261	44	2	323	2	KRTAP4-1	17	39341039	Missense_Mutation	SNP	G	TCGA-DV-5576-01A-01D-1534-10	783882	39341039	41854171	19	35202											
ACSF2	80221	hgsc.bcm.edu;ucsc.edu	37	17	48551039	48551039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	G	48551039	A	G	48551039	3	3	602	1	0	0	0	0	1	0	0	0	175	101	4	3	1539	3	ACSF2	17	48551039	Missense_Mutation	SNP	A	TCGA-DV-5576-01A-01D-1534-10	9210000	48551039	32644171	20	35203											
TM6SF2	53345	hgsc.bcm.edu	37	19	19381023	19381023	+	Silent	SNP	G	G	A	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	A	19381023	G	A	19381023	2	1	602	1	0	0	0	0	0	0	0	1	15985	1020	36	2		2	TM6SF2	19	19381023	Silent	SNP	G	TCGA-DV-5576-01A-01D-1534-10		19381023	39747960	21	35204											
ZNF208	7757	hgsc.bcm.edu	37	19	22156286	22156286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	T	22156286	C	T	22156286	3	4	602	1	0	0	0	0	1	0	0	0	17778	913	32	2	2296	2	ZNF208	19	22156286	Missense_Mutation	SNP	C	TCGA-DV-5576-01A-01D-1534-10	2775263	22156286	36972697	22	35205											
ZNF676	163223	hgsc.bcm.edu	37	19	22363631	22363631	+	Silent	SNP	G	G	A	rs75683199	bycluster;byfrequency	TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	A	22363631	G	A	22363631	2	1	602	1	0	0	0	0	0	0	0	1	18095	1277	45	2		2	ZNF676	19	22363631	Silent	SNP	G	TCGA-DV-5576-01A-01D-1534-10	207345	22363631	36765352	23	35206	461	2									
ZNF676	163223	hgsc.bcm.edu	37	19	22363634	22363634	+	Missense_Mutation	SNP	C	C	A	rs76456473	bycluster;byfrequency	TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	A	22363634	C	A	22363634	3	1	602	1	0	0	0	0	1	0	0	0	18095	796	28	4	885	4	ZNF676	19	22363634	Missense_Mutation	SNP	C	TCGA-DV-5576-01A-01D-1534-10	3	22363634	36765349	24	35207	461	2									
CEACAM3	1084	hgsc.bcm.edu;ucsc.edu	37	19	42301763	42301763	+	Missense_Mutation	SNP	A	A	C	rs61737014	byfrequency;by1000genomes	TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	C	42301763	A	C	42301763	3	2	602	1	0	0	0	0	1	0	0	0	3195	159	6	5	313	5	CEACAM3	19	42301763	Missense_Mutation	SNP	A	TCGA-DV-5576-01A-01D-1534-10	19938129	42301763	16827220	25	35208											
STK35	140901	hgsc.bcm.edu;ucsc.edu	37	20	2097952	2097952	+	Silent	SNP	T	T	A	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	A	2097952	T	A	2097952	2	1	602	1	0	0	0	0	0	0	0	1	15313	1567	55	5		5	STK35	20	2097952	Silent	SNP	T	TCGA-DV-5576-01A-01D-1534-10		2097952	60927568	26	35209											
RPGR	6103	hgsc.bcm.edu	37	X	38145700	38145700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	C	38145700	T	C	38145700	3	2	602	1	0	0	0	0	1	0	0	0	13561	1551	54	3	1469	3	RPGR	23	38145700	Missense_Mutation	SNP	T	TCGA-DV-5576-01A-01D-1534-10		38145700	117124860	27	35210	462	2									
RPGR	6103	hgsc.bcm.edu	37	X	38145704	38145704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	T	38145704	C	T	38145704	3	4	602	1	0	0	0	0	1	0	0	0	13561	864	30	2	1473	2	RPGR	23	38145704	Missense_Mutation	SNP	C	TCGA-DV-5576-01A-01D-1534-10	4	38145704	117124856	28	35211	462	2									
ATRX	546	hgsc.bcm.edu;ucsc.edu	37	X	76938884	76938884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	T	76938884	G	T	76938884	3	4	602	1	0	0	0	0	1	0	0	0	1208	1232	43	4	5722	4	ATRX	23	76938884	Missense_Mutation	SNP	G	TCGA-DV-5576-01A-01D-1534-10	38793180	76938884	78331676	29	35212											
GPR50	9248	hgsc.bcm.edu;ucsc.edu	37	X	150349558	150349569	+	In_Frame_Del	DEL	CACCACTGGCCA	CACCACTGGCCA	-	rs68058591		TCGA-DV-5576-01A-01D-1534-10	TCGA-DV-5576-10A-01D-1535-10	CACCACTGGCCA	CACCACTGGCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dc677d8e-ec39-4038-a86c-8290dacd377b	827b7591-b763-4d3f-beb3-c8c53b03bc21	-	150349569	CACCACTGGCCA	-	150349558	7	5	602	1	0	1	0	1	0	0	0	0	6704	581	21	0	1509	0	GPR50	23	150349558	In_Frame_Del	DEL	CACCACTGGCCA	TCGA-DV-5576-01A-01D-1534-10	73410674	150349558	4921002	30	35213											
UBE4B	10277	broad.mit.edu;bcgsc.ca	37	1	10177626	10177626	+	Silent	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	10177626	C	A	10177626	2	1	603	1	0	0	0	0	0	0	0	1	16895	644	23	4		4	UBE4B	1	10177626	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08		10177626	239072995	1	35214											
VPS13D	55187	bcgsc.ca	37	1	12387776	12387776	+	Missense_Mutation	SNP	A	A	C	rs201321059		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	12387776	A	C	12387776	3	2	603	1	0	0	0	0	1	0	0	0	17204	159	6	5	8200	5	VPS13D	1	12387776	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	2210150	12387776	236862845	2	35215											
FGGY	55277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	60133071	60133091	+	Frame_Shift_Del	DEL	TACTGGTAAGTCTGGGAAAGA	TACTGGTAAGTCTGGGAAAGA	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	TACTGGTAAGTCTGGGAAAGA	TACTGGTAAGTCTGGGAAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	-	60133091	TACTGGTAAGTCTGGGAAAGA	-	60133071	7	5	603	1	0	1	0	1	0	0	0	0	5878	1742	61	0	1535	0	FGGY	1	60133071	Frame_Shift_Del	DEL	TACTGGTAAGTCTGGGAAAGA	TCGA-DW-5560-01A-01D-1589-08	47745295	60133071	189117550	3	35216											
C1orf173	127254	bcgsc.ca	37	1	75037375	75037375	+	Missense_Mutation	SNP	A	A	C	rs78115948		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	75037375	A	C	75037375	3	2	603	1	0	0	0	0	1	0	0	0	2016	159	6	5	577	5	C1orf173	1	75037375	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	14904304	75037375	174213246	4	35217											
FRRS1	391059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100214268	100214268	+	Silent	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	100214268	A	G	100214268	2	3	603	1	0	0	0	0	0	0	0	1	6067	224	8	3		3	FRRS1	1	100214268	Silent	SNP	A	TCGA-DW-5560-01A-01D-1589-08	25176893	100214268	149036353	5	35218											
ALX3	257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110604111	110604111	+	Silent	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	110604111	G	T	110604111	2	4	603	1	0	0	0	0	0	0	0	1	557	987	35	4		4	ALX3	1	110604111	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	10389843	110604111	138646510	6	35219											
FCRL1	115350	bcgsc.ca	37	1	157776893	157776893	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	157776893	G	A	157776893	2	1	603	1	0	0	0	0	0	0	0	1	5801	1130	39	1		1	FCRL1	1	157776893	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	47172782	157776893	91473728	7	35220											
DSTYK	25778	hgsc.bcm.edu	37	1	205132867	205132867	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	205132867	C	G	205132867	3	3	603	1	0	0	0	0	1	0	0	0	4787	565	20	4	1288	4	DSTYK	1	205132867	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	47355974	205132867	44117754	8	35221											
ROCK2	9475	broad.mit.edu	37	2	11354553	11354553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	11354553	C	T	11354553	3	4	603	1	0	0	0	0	1	0	0	0	13531	739	26	2	2261	2	ROCK2	2	11354553	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		11354553	231844820	9	35222											
ZNF514	84874	bcgsc.ca	37	2	95818976	95818976	+	Missense_Mutation	SNP	A	A	C	rs79400981		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	95818976	A	C	95818976	3	2	603	1	0	0	0	0	1	0	0	0	17971	159	6	5	1191	5	ZNF514	2	95818976	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	84464423	95818976	147380397	10	35223											
PROM2	150696	bcgsc.ca	37	2	95945594	95945594	+	Missense_Mutation	SNP	T	T	G	rs199504764		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	95945594	T	G	95945594	3	3	603	1	0	0	0	0	1	0	0	0	12566	1710	59	5	1318	5	PROM2	2	95945594	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	126618	95945594	147253779	11	35224											
BIN1	274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	127828371	127828371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	127828371	T	C	127828371	3	2	603	1	0	0	0	0	1	0	0	0	1432	1792	62	3	1711	3	BIN1	2	127828371	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	31882777	127828371	115371002	12	35225											
RAB6C	84084	hgsc.bcm.edu	37	2	130738210	130738210	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	130738210	G	A	130738210	2	1	603	1	0	0	0	0	0	0	0	1	12966	1310	46	2		2	RAB6C	2	130738210	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	2909839	130738210	112461163	13	35226											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152512859	152512859	+	Silent	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	152512859	C	T	152512859	2	4	603	1	0	0	0	0	0	0	0	1	10309	564	20	2		2	NEB	2	152512859	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	21774649	152512859	90686514	14	35227											
SCN3A	6328	bcgsc.ca	37	2	166012356	166012356	+	Nonsense_Mutation	SNP	G	G	T	rs202083628		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	166012356	G	T	166012356	4	4	603	1	0	0	0	0	0	1	0	0	13931	1372	48	4	4989	4	SCN3A	2	166012356	Nonsense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	13499497	166012356	77187017	15	35228											
SCN9A	6335	bcgsc.ca	37	2	167060900	167060900	+	Silent	SNP	C	C	T	rs201748099		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	167060900	C	T	167060900	2	4	603	1	0	0	0	0	0	0	0	1	13938	912	32	2		2	SCN9A	2	167060900	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	1048544	167060900	76138473	16	35229											
ABCB11	8647	bcgsc.ca	37	2	169847341	169847341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	169847341	G	C	169847341	3	2	603	1	0	0	0	0	1	0	0	0	42	971	34	4	3167	4	ABCB11	2	169847341	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	2786441	169847341	73352032	17	35230											
PRKRA	8575	hgsc.bcm.edu	37	2	179306335	179306336	+	Splice_Site	DNP	AC	AC	GT	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	GT	179306336	AC	GT	179306335	5	3	603	1	0	0	0	0	0	0	1	0	12534	173	6	3	342	3	PRKRA	2	179306335	Splice_Site	DNP	AC	TCGA-DW-5560-01A-01D-1589-08	9458994	179306335	63893038	18	35231											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179433843	179433843	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	179433843	G	C	179433843	4	2	603	1	0	0	0	0	0	1	0	0	16747	1024	36	4	31111	4	TTN	2	179433843	Nonsense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	127508	179433843	63765530	19	35232											
COL6A3	1293	bcgsc.ca	37	2	238253123	238253123	+	Missense_Mutation	SNP	A	A	C	rs199609978		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	238253123	A	C	238253123	3	2	603	1	0	0	0	0	1	0	0	0	3703	43	2	5	2031	5	COL6A3	2	238253123	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	58819280	238253123	4946250	20	35233											
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50005960	50005960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	50005960	G	T	50005960	3	4	603	1	0	0	0	0	1	0	0	0	13157	942	33	4	1108	4	RBM6	3	50005960	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08		50005960	148016470	21	35234											
DGKQ	1609	hgsc.bcm.edu	37	4	954919	954919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	954919	A	G	954919	3	3	603	1	0	0	0	0	1	0	0	0	4475	304	11	3	191	3	DGKQ	4	954919	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08		954919	190199357	22	35235											
RBPJ	3516	hgsc.bcm.edu	37	4	26426305	26426305	+	Silent	SNP	C	C	T	rs5007635		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	26426305	C	T	26426305	2	4	603	1	0	0	0	0	0	0	0	1	13174	845	30	2		2	RBPJ	4	26426305	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	25471386	26426305	164727971	23	35236											
SPEF2	79925	bcgsc.ca	37	5	35670228	35670228	+	Missense_Mutation	SNP	C	C	A	rs77343152		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	35670228	C	A	35670228	3	1	603	1	0	0	0	0	1	0	0	0	15047	479	17	4	1461	4	SPEF2	5	35670228	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		35670228	145245032	24	35237											
LOX	4015	bcgsc.ca	37	5	121409741	121409741	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	121409741	G	T	121409741	4	4	603	1	0	0	0	0	0	1	0	0	8905	1256	44	4	267	4	LOX	5	121409741	Nonsense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	85739513	121409741	59505519	25	35238											
F12	2161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176831341	176831341	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	176831341	G	A	176831341	2	1	603	1	0	0	0	0	0	0	0	1	5341	991	35	2		2	F12	5	176831341	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	55421600	176831341	4083919	26	35239											
FAM65B	9750	bcgsc.ca	37	6	24850081	24850081	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	24850081	A	C	24850081	3	2	603	1	0	0	0	0	1	0	0	0	5607	275	10	5	2372	5	FAM65B	6	24850081	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08		24850081	146264986	27	35240											
ZKSCAN3	80317	bcgsc.ca	37	6	28333714	28333714	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	28333714	G	A	28333714	2	1	603	1	0	0	0	0	0	0	0	1	17700	933	33	2		2	ZKSCAN3	6	28333714	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	3483633	28333714	142781353	28	35241											
HLA-DOA	3111	broad.mit.edu;bcgsc.ca	37	6	32974906	32974906	+	Missense_Mutation	SNP	C	C	T	rs200140467		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	32974906	C	T	32974906	3	4	603	1	0	0	0	0	1	0	0	0	7207	536	19	1	60	1	HLA-DOA	6	32974906	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	4641192	32974906	138140161	29	35242											
FKBP5	2289	bcgsc.ca	37	6	35610559	35610559	+	Missense_Mutation	SNP	T	T	G	rs139048363		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	35610559	T	G	35610559	3	3	603	1	0	0	0	0	1	0	0	0	5918	1696	59	5	1428	5	FKBP5	6	35610559	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	2635653	35610559	135504508	30	35243											
FAM184A	79632	bcgsc.ca	37	6	119282964	119282964	+	Silent	SNP	T	T	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	119282964	T	G	119282964	2	3	603	1	0	0	0	0	0	0	0	1	5515	1683	59	5		5	FAM184A	6	119282964	Silent	SNP	T	TCGA-DW-5560-01A-01D-1589-08	83672405	119282964	51832103	31	35244											
PLG	5340	broad.mit.edu	37	6	161152118	161152118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	161152118	C	T	161152118	3	4	603	1	0	0	0	0	1	0	0	0	12093	739	26	2	1338	2	PLG	6	161152118	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	41869154	161152118	9962949	32	35245											
VPS37D	155382	hgsc.bcm.edu	37	7	73083798	73083798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	73083798	C	G	73083798	3	3	603	1	0	0	0	0	1	0	0	0	17220	768	27	4	194	4	VPS37D	7	73083798	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		73083798	86054865	33	35246											
DPYS	1807	hgsc.bcm.edu	37	8	105479134	105479134	+	Silent	SNP	C	C	T	rs182332679		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	105479134	C	T	105479134	2	4	603	1	0	0	0	0	0	0	0	1	4748	755	27	1		1	DPYS	8	105479134	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08		105479134	40884888	34	35247											
EDF1	8721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139757816	139757816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	139757816	C	A	139757816	3	1	603	1	0	0	0	0	1	0	0	0	4916	681	24	4	278	4	EDF1	9	139757816	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		139757816	1455615	35	35248											
PIP4K2A	5305	bcgsc.ca	37	10	22856802	22856802	+	Missense_Mutation	SNP	C	C	T	rs201266267		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	22856802	C	T	22856802	3	4	603	1	0	0	0	0	1	0	0	0	11943	913	32	2	584	2	PIP4K2A	10	22856802	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		22856802	112677945	36	35249											
SYT15	83849	hgsc.bcm.edu	37	10	46969435	46969435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	46969435	A	G	46969435	3	3	603	1	0	0	0	0	1	0	0	0	15483	101	4	3	1321	3	SYT15	10	46969435	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	24112633	46969435	88565312	37	35250											
ARHGAP22	58504	bcgsc.ca	37	10	49667744	49667744	+	Silent	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	49667744	C	T	49667744	2	4	603	1	0	0	0	0	0	0	0	1	872	912	32	2		2	ARHGAP22	10	49667744	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	2698309	49667744	85867003	38	35251											
TMEM26	219623	bcgsc.ca	37	10	63195951	63195951	+	Missense_Mutation	SNP	G	G	A	rs200974700		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	63195951	G	A	63195951	3	1	603	1	0	0	0	0	1	0	0	0	16163	942	33	2	879	2	TMEM26	10	63195951	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	13528207	63195951	72338796	39	35252											
DNA2	1763	bcgsc.ca	37	10	70196869	70196869	+	Silent	SNP	A	A	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	70196869	A	C	70196869	2	2	603	1	0	0	0	0	0	0	0	1	4598	146	6	5		5	DNA2	10	70196869	Silent	SNP	A	TCGA-DW-5560-01A-01D-1589-08	7000918	70196869	65337878	40	35253											
RIC8A	60626	broad.mit.edu;bcgsc.ca	37	11	208890	208890	+	Silent	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	208890	G	T	208890	2	4	603	1	0	0	0	0	0	0	0	1	13368	1103	39	4		4	RIC8A	11	208890	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08		208890	134797626	41	35254											
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	428825	428825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	428825	T	C	428825	3	2	603	1	0	0	0	0	1	0	0	0	704	1565	54	3	1479	3	ANO9	11	428825	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	219935	428825	134577691	42	35255											
OR5B3	441608	broad.mit.edu	37	11	58170566	58170566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	58170566	G	A	58170566	3	1	603	1	0	0	0	0	1	0	0	0	11159	1203	42	2	629	2	OR5B3	11	58170566	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	57741741	58170566	76835950	43	35256											
LARP4	113251	bcgsc.ca	37	12	50869377	50869377	+	Silent	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	50869377	G	C	50869377	2	2	603	1	0	0	0	0	0	0	0	1	8637	1306	46	4		4	LARP4	12	50869377	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08		50869377	82982518	44	35257											
BEST3	144453	bcgsc.ca	37	12	70049556	70049556	+	Missense_Mutation	SNP	A	A	C	rs75364232		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	70049556	A	C	70049556	3	2	603	1	0	0	0	0	1	0	0	0	1406	159	6	5	872	5	BEST3	12	70049556	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	19180179	70049556	63802339	45	35258											
RPL6	6128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	112843158	112843158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	112843158	C	T	112843158	3	4	603	1	0	0	0	0	1	0	0	0	13611	768	27	1	133	1	RPL6	12	112843158	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	42793602	112843158	21008737	46	35259											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123801801	123801802	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	123801802	-	T	123801801	7	5	603	1	0	1	1	0	0	0	0	0	13875	1261	44	0	1327	0	SBNO1	12	123801801	Frame_Shift_Ins	INS	-	TCGA-DW-5560-01A-01D-1589-08	10958643	123801801	10050094	47	35260											
TMCO3	55002	bcgsc.ca	37	13	114188424	114188425	+	In_Frame_Ins	INS	-	-	GGTTTTTTTTTT	rs141899812	bycluster;by1000genomes;alternate_allele	TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	GGTTTTTTTTTT	114188425	-	GGTTTTTTTTTT	114188424	7	5	603	1	0	1	1	0	0	0	0	0	16009	1261	44	0	1438	0	TMCO3	13	114188424	In_Frame_Ins	INS	-	TCGA-DW-5560-01A-01D-1589-08		114188424	981454	48	35261											
INF2	64423	hgsc.bcm.edu;bcgsc.ca	37	14	105174895	105174896	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	105174896	-	C	105174895	7	5	603	1	0	1	1	0	0	0	0	0	7741	1203	42	0	1892	0	INF2	14	105174895	Frame_Shift_Ins	INS	-	TCGA-DW-5560-01A-01D-1589-08		105174895	2174645	49	35262											
DMXL2	23312	broad.mit.edu;bcgsc.ca	37	15	51783908	51783908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	51783908	G	A	51783908	3	1	603	1	0	0	0	0	1	0	0	0	4597	942	33	2	4389	2	DMXL2	15	51783908	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08		51783908	50747484	50	35263											
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	93567925	93567925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	93567925	G	A	93567925	3	1	603	1	0	0	0	0	1	0	0	0	3327	1116	39	1	5631	1	CHD2	15	93567925	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	41784017	93567925	8963467	51	35264											
SMG1	23049	hgsc.bcm.edu	37	16	18841542	18841542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	18841542	T	C	18841542	3	2	603	1	0	0	0	0	1	0	0	0	14808	1623	56	3	2091	3	SMG1	16	18841542	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08		18841542	71513211	52	35265											
NFATC2IP	84901	hgsc.bcm.edu	37	16	28962357	28962357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	28962357	G	A	28962357	3	1	603	1	0	0	0	0	1	0	0	0	10370	1232	43	2	27	2	NFATC2IP	16	28962357	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	10120815	28962357	61392396	53	35266											
PLEKHG4	25894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67315014	67315014	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	67315014	G	C	67315014	3	2	603	1	0	0	0	0	1	0	0	0	12078	1174	41	4	754	4	PLEKHG4	16	67315014	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	38352657	67315014	23039739	54	35267											
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71789972	71789972	+	Silent	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	T	71789972	C	T	71789972	2	4	603	1	0	0	0	0	0	0	0	1	732	796	28	2		2	AP1G1	16	71789972	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	4474958	71789972	18564781	55	35268											
ADAMTS18	170692	broad.mit.edu	37	16	77325309	77325309	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	77325309	C	A	77325309	4	1	603	1	0	0	0	0	0	1	0	0	263	632	22	4	421	4	ADAMTS18	16	77325309	Nonsense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	5535337	77325309	13029444	56	35269											
CCL23	6368	broad.mit.edu	37	17	34340315	34340315	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	34340315	G	A	34340315	2	1	603	1	0	0	0	0	0	0	0	1	2897	1335	47	2		2	CCL23	17	34340315	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08		34340315	46854895	57	35270											
CDK12	51755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37627488	37627488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	37627488	T	A	37627488	3	1	603	1	0	0	0	0	1	0	0	0	3130	1522	53	5	1409	5	CDK12	17	37627488	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	3287173	37627488	43567722	58	35271											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57754485	57754485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	57754485	A	G	57754485	3	3	603	1	0	0	0	0	1	0	0	0	3568	72	3	3	2798	3	CLTC	17	57754485	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	20126997	57754485	23440725	59	35272											
MRC2	9902	hgsc.bcm.edu	37	17	60767020	60767020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	60767020	G	C	60767020	3	2	603	1	0	0	0	0	1	0	0	0	9765	1319	46	4	3566	4	MRC2	17	60767020	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	3012535	60767020	20428190	60	35273											
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66267173	66267173	+	Silent	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	66267173	A	G	66267173	2	3	603	1	0	0	0	0	0	0	0	1	14425	359	13	3		3	SLC16A6	17	66267173	Silent	SNP	A	TCGA-DW-5560-01A-01D-1589-08	5500153	66267173	14928037	61	35274											
ZNF763	284390	hgsc.bcm.edu	37	19	12088187	12088187	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	12088187	G	A	12088187	2	1	603	1	0	0	0	0	0	0	0	1	18149	1188	41	2		2	ZNF763	19	12088187	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08		12088187	47040796	62	35275											
CDS2	8760	bcgsc.ca	37	20	5157344	5157344	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	5157344	C	A	5157344	4	1	603	1	0	0	0	0	0	1	0	0	3180	489	17	4	356	4	CDS2	20	5157344	Nonsense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		5157344	57868176	63	35276											
ZHX3	23051	ucsc.edu	37	20	39832697	39832697	+	Missense_Mutation	SNP	T	T	G	rs200146666		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	39832697	T	G	39832697	3	3	603	1	0	0	0	0	1	0	0	0	17689	1696	59	5	2018	5	ZHX3	20	39832697	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	34675353	39832697	23192823	64	35277											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu	37	20	46252817	46252817	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	-	46252817	A	-	46252817	7	5	603	1	0	1	0	1	0	0	0	0	10237	352	13	0	252	0	NCOA3	20	46252817	Frame_Shift_Del	DEL	A	TCGA-DW-5560-01A-01D-1589-08	6420120	46252817	16772703	65	35278											
LSM14B	149986	hgsc.bcm.edu	37	20	60697753	60697753	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	C	60697753	G	C	60697753	3	2	603	1	0	0	0	0	1	0	0	0	9062	1232	43	4	33	4	LSM14B	20	60697753	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	14444936	60697753	2327767	66	35279											
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62340218	62340218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	62340218	G	A	62340218	3	1	603	1	0	0	0	0	1	0	0	0	17686	1203	42	2	288	2	ZGPAT	20	62340218	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	1642465	62340218	685302	67	35280											
FBXO7	25793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32889131	32889131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	32889131	C	A	32889131	3	1	603	1	0	0	0	0	1	0	0	0	5767	594	21	4	1074	4	FBXO7	22	32889131	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		32889131	18415435	68	35281											
DDX3X	1654	bcgsc.ca	37	X	41205659	41205659	+	Missense_Mutation	SNP	C	C	A	rs200427211		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	A	41205659	C	A	41205659	3	1	603	1	0	0	0	0	1	0	0	0	4360	478	17	4	1543	4	DDX3X	23	41205659	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		41205659	114064901	69	35282											
PHF8	23133	hgsc.bcm.edu	37	X	53966769	53966769	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	G	53966769	C	G	53966769	3	3	603	1	0	0	0	0	1	0	0	0	11847	739	26	4	335	4	PHF8	23	53966769	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	12761110	53966769	101303791	70	35283											
UBIAD1	29914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11346095	11346095	+	Silent	SNP	G	G	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	11346095	G	C	11346095	2	2	604	1	0	0	0	0	0	0	0	1	16897	1306	46	4		4	UBIAD1	1	11346095	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08		11346095	237904526	1	35284											
PADI3	51702	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	17609568	17609568	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	17609568	G	A	17609568	2	1	604	1	0	0	0	0	0	0	0	1	11386	1306	46	2		2	PADI3	1	17609568	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08	6263473	17609568	231641053	2	35285											
ZDHHC18	84243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27176925	27176925	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	27176925	G	A	27176925	2	1	604	1	0	0	0	0	0	0	0	1	17620	1132	40	1		1	ZDHHC18	1	27176925	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08	9567357	27176925	222073696	3	35286											
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33237745	33237745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	33237745	C	A	33237745	3	1	604	1	0	0	0	0	1	0	0	0	8245	623	22	4	2987	4	KIAA1522	1	33237745	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	6060820	33237745	216012876	4	35287											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39835802	39835802	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	G	39835802	C	G	39835802	3	3	604	1	0	0	0	0	1	0	0	0	9151	507	18	4	13186	4	MACF1	1	39835802	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	6598057	39835802	209414819	5	35288											
IER5	51278	hgsc.bcm.edu	37	1	181058618	181058618	+	Missense_Mutation	SNP	C	C	G	rs1416829		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	G	181058618	C	G	181058618	3	3	604	1	0	0	0	0	1	0	0	0	7515	652	23	4	582	4	IER5	1	181058618	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	141222816	181058618	68192003	6	35289											
HMCN1	83872	bcgsc.ca	37	1	186094789	186094789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	186094789	C	A	186094789	3	1	604	1	0	0	0	0	1	0	0	0	7227	479	17	4	12879	4	HMCN1	1	186094789	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	5036171	186094789	63155832	7	35290											
TMEM81	388730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205052751	205052751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	205052751	G	T	205052751	3	4	604	1	0	0	0	0	1	0	0	0	16217	1203	42	4	73	4	TMEM81	1	205052751	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	18957962	205052751	44197870	8	35291											
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205064022	205064022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	205064022	C	T	205064022	3	4	604	1	0	0	0	0	1	0	0	0	13115	864	30	2	57	2	RBBP5	1	205064022	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	11271	205064022	44186599	9	35292											
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207642031	207642031	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	207642031	A	C	207642031	3	2	604	1	0	0	0	0	1	0	0	0	3844	14	1	5	615	5	CR2	1	207642031	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	2578009	207642031	41608590	10	35293											
NCOA1	8648	broad.mit.edu	37	2	24930397	24930397	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	24930397	G	A	24930397	2	1	604	1	0	0	0	0	0	0	0	1	10235	1190	42	2		2	NCOA1	2	24930397	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08		24930397	218268976	11	35294											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220338577	220338577	+	Silent	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	220338577	C	A	220338577	2	1	604	1	0	0	0	0	0	0	0	1	15048	644	23	4		4	SPEG	2	220338577	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	195408180	220338577	22860796	12	35295											
INHA	3623	hgsc.bcm.edu	37	2	220437360	220437360	+	Silent	SNP	C	C	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	G	220437360	C	G	220437360	2	3	604	1	0	0	0	0	0	0	0	1	7747	581	21	4		4	INHA	2	220437360	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	98783	220437360	22762013	13	35296											
ATG7	10533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	11356947	11356947	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	11356947	T	A	11356947	3	1	604	1	0	0	0	0	1	0	0	0	1101	1609	56	5	680	5	ATG7	3	11356947	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		11356947	186665483	14	35297											
DHX30	22907	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	47882520	47882520	+	Silent	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	47882520	C	A	47882520	2	1	604	1	0	0	0	0	0	0	0	1	4506	876	31	4		4	DHX30	3	47882520	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	36525573	47882520	150139910	15	35298											
CELSR3	1951	broad.mit.edu	37	3	48696845	48696845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	48696845	G	A	48696845	3	1	604	1	0	0	0	0	1	0	0	0	3225	1086	38	1	6855	1	CELSR3	3	48696845	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	814325	48696845	149325585	16	35299											
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	193132518	193132518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	193132518	G	C	193132518	3	2	604	1	0	0	0	0	1	0	0	0	1126	1000	35	4	746	4	ATP13A4	3	193132518	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	144435673	193132518	4889912	17	35300											
ABLIM2	84448	broad.mit.edu	37	4	8021392	8021392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	8021392	C	T	8021392	3	4	604	1	0	0	0	0	1	0	0	0	95	739	26	2	610	2	ABLIM2	4	8021392	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08		8021392	183132884	18	35301											
ANAPC4	29945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25396298	25396298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	G	25396298	A	G	25396298	3	3	604	1	0	0	0	0	1	0	0	0	604	246	9	3	993	3	ANAPC4	4	25396298	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	17374906	25396298	165757978	19	35302											
PARM1	25849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	75937687	75937687	+	Silent	SNP	G	G	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	75937687	G	C	75937687	2	2	604	1	0	0	0	0	0	0	0	1	11459	1045	37	4		4	PARM1	4	75937687	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08	50541389	75937687	115216589	20	35303											
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	111397845	111397845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	111397845	G	A	111397845	3	1	604	1	0	0	0	0	1	0	0	0	5130	1058	37	1	277	1	ENPEP	4	111397845	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	35460158	111397845	79756431	21	35304											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7820695	7820695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	7820695	G	A	7820695	3	1	604	1	0	0	0	0	1	0	0	0	294	1377	48	2	3110	2	ADCY2	5	7820695	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08		7820695	173094565	22	35305											
CMBL	134147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	10288604	10288609	+	In_Frame_Del	DEL	AAGGCT	AAGGCT	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	AAGGCT	AAGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	-	10288609	AAGGCT	-	10288604	7	5	604	1	0	1	0	1	0	0	0	0	3578	130	5	0	500	0	CMBL	5	10288604	In_Frame_Del	DEL	AAGGCT	TCGA-DW-5561-01A-01D-1589-08	2467909	10288604	170626656	23	35306											
RPS14	6208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149827271	149827271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	149827271	T	C	149827271	3	2	604	1	0	0	0	0	1	0	0	0	13637	1609	56	3	445	3	RPS14	5	149827271	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08	139538667	149827271	31087989	24	35307											
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	173317605	173317605	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	-	173317605	G	-	173317605	7	5	604	1	0	1	0	1	0	0	0	0	3805	1029	36	0	871	0	CPEB4	5	173317605	Frame_Shift_Del	DEL	G	TCGA-DW-5561-01A-01D-1589-08	23490334	173317605	7597655	25	35308											
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4047415	4047415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	G	4047415	C	G	4047415	3	3	604	1	0	0	0	0	1	0	0	0	12583	913	32	4	1894	4	PRPF4B	6	4047415	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08		4047415	167067652	26	35309											
INTS1	26173	hgsc.bcm.edu	37	7	1538639	1538639	+	Missense_Mutation	SNP	T	T	C	rs200286642		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	1538639	T	C	1538639	3	2	604	1	0	0	0	0	1	0	0	0	7782	1609	56	3	5627	3	INTS1	7	1538639	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		1538639	157600024	27	35310											
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	119915491	119915491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	119915491	G	T	119915491	3	4	604	1	0	0	0	0	1	0	0	0	8026	1203	42	4	807	4	KCND2	7	119915491	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	118376852	119915491	39223172	28	35311											
KLRG2	346689	broad.mit.edu	37	7	139164445	139164445	+	Silent	SNP	C	C	T	rs201132743		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	139164445	C	T	139164445	2	4	604	1	0	0	0	0	0	0	0	1	8429	755	27	1		1	KLRG2	7	139164445	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	19248954	139164445	19974218	29	35312											
CDKN2B	1030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	22006244	22006244	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	22006244	G	A	22006244	2	1	604	1	0	0	0	0	0	0	0	1	3166	1277	45	2		2	CDKN2B	9	22006244	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08		22006244	119207187	30	35313											
NIPSNAP3B	55335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107531256	107531256	+	Silent	SNP	T	T	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	107531256	T	A	107531256	2	1	604	1	0	0	0	0	0	0	0	1	10438	1742	61	5		5	NIPSNAP3B	9	107531256	Silent	SNP	T	TCGA-DW-5561-01A-01D-1589-08	85525012	107531256	33682175	31	35314											
C10orf95	79946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104211148	104211149	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	104211149	-	C	104211148	7	5	604	1	0	1	1	0	0	0	0	0	1628	1538	54	0	703	0	C10orf95	10	104211148	Frame_Shift_Ins	INS	-	TCGA-DW-5561-01A-01D-1589-08		104211148	31323599	32	35315											
DCHS1	8642	hgsc.bcm.edu	37	11	6662787	6662787	+	Missense_Mutation	SNP	G	G	A	rs201684495		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	6662787	G	A	6662787	3	1	604	1	0	0	0	0	1	0	0	0	4289	1348	47	2	9918	2	DCHS1	11	6662787	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08		6662787	128343729	33	35316											
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55110797	55110797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	55110797	C	T	55110797	3	4	604	1	0	0	0	0	1	0	0	0	11048	681	24	2	123	2	OR4A16	11	55110797	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	48448010	55110797	79895719	34	35317											
ETS1	2113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128360461	128360461	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	128360461	A	T	128360461	4	4	604	1	0	0	0	0	0	1	0	0	5277	157	6	5	1260	5	ETS1	11	128360461	Nonsense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	73249664	128360461	6646055	35	35318											
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	335609	335609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	G	335609	A	G	335609	3	3	604	1	0	0	0	0	1	0	0	0	14689	188	7	3	829	3	SLC6A13	12	335609	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08		335609	133516286	36	35319											
GAPDH	2597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6646478	6646485	+	Frame_Shift_Del	DEL	TGCCTCCT	TGCCTCCT	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	TGCCTCCT	TGCCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	-	6646485	TGCCTCCT	-	6646478	7	5	604	1	0	1	0	1	0	0	0	0	6243	1461	51	0	469	0	GAPDH	12	6646478	Frame_Shift_Del	DEL	TGCCTCCT	TCGA-DW-5561-01A-01D-1589-08	6310869	6646478	127205417	37	35320											
TAS2R20	259295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11150353	11150353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	11150353	A	T	11150353	3	4	604	1	0	0	0	0	1	0	0	0	15583	333	12	5	811	5	TAS2R20	12	11150353	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	4503875	11150353	122701542	38	35321											
TBC1D15	64786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	72288466	72288466	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	72288466	A	T	72288466	4	4	604	1	0	0	0	0	0	1	0	0	15616	260	9	5	863	5	TBC1D15	12	72288466	Nonsense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	61138113	72288466	61563429	39	35322											
CEP290	80184	broad.mit.edu	37	12	88479916	88479916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	88479916	C	A	88479916	3	1	604	1	0	0	0	0	1	0	0	0	3255	565	20	4	3186	4	CEP290	12	88479916	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	16191450	88479916	45371979	40	35323											
GALNT4	8693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	89918277	89918277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	89918277	A	C	89918277	3	2	604	1	0	0	0	0	1	0	0	0	6222	14	1	5	1690	5	GALNT4	12	89918277	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	1438361	89918277	43933618	41	35324											
CHPT1	56994	hgsc.bcm.edu	37	12	102091671	102091671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	102091671	C	A	102091671	3	1	604	1	0	0	0	0	1	0	0	0	3372	652	23	4	34	4	CHPT1	12	102091671	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	12173394	102091671	31760224	42	35325											
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	30091728	30091728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	30091728	T	C	30091728	3	2	604	1	0	0	0	0	1	0	0	0	14705	1464	51	3	413	3	SLC7A1	13	30091728	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		30091728	85078150	43	35326											
EFNB2	1948	broad.mit.edu;bcgsc.ca	37	13	107148096	107148096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	107148096	C	T	107148096	3	4	604	1	0	0	0	0	1	0	0	0	4958	695	24	2	514	2	EFNB2	13	107148096	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	77056368	107148096	8021782	44	35327											
GJD2	57369	broad.mit.edu	37	15	35044907	35044907	+	Silent	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	35044907	C	T	35044907	2	4	604	1	0	0	0	0	0	0	0	1	6424	726	26	2		2	GJD2	15	35044907	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08		35044907	67486485	45	35328											
TRIP4	9325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64702017	64702017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	64702017	T	C	64702017	3	2	604	1	0	0	0	0	1	0	0	0	16570	1638	57	3	1059	3	TRIP4	15	64702017	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08	29657110	64702017	37829375	46	35329											
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4165346	4165346	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	G	4165346	T	G	4165346	3	3	604	1	0	0	0	0	1	0	0	0	301	1725	60	5	4003	5	ADCY9	16	4165346	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		4165346	86189407	47	35330											
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27002076	27002076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	C	27002076	T	C	27002076	3	2	604	1	0	0	0	0	1	0	0	0	15412	1493	52	3	448	3	SUPT6H	17	27002076	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		27002076	54193134	48	35331											
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197360	39197360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	G	39197360	A	G	39197360	3	3	604	1	0	0	0	0	1	0	0	0	8509	101	4	3	247	3	KRTAP1-1	17	39197360	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	12195284	39197360	41997850	49	35332											
FSCN2	25794	hgsc.bcm.edu	37	17	79495866	79495866	+	Silent	SNP	G	G	A	rs34126129		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	79495866	G	A	79495866	2	1	604	1	0	0	0	0	0	0	0	1	6075	1248	44	2		2	FSCN2	17	79495866	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08	40298506	79495866	1699344	50	35333											
SF3A2	8175	hgsc.bcm.edu	37	19	2248401	2248401	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	2248401	G	A	2248401	2	1	604	1	0	0	0	0	0	0	0	1	14160	1103	39	1		1	SF3A2	19	2248401	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08		2248401	56880582	51	35334											
NDUFB7	4713	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	14677078	14677078	+	Splice_Site	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	14677078	C	A	14677078	5	1	604	1	0	0	0	0	0	0	1	0	10293	811	28	4	136	4	NDUFB7	19	14677078	Splice_Site	SNP	C	TCGA-DW-5561-01A-01D-1589-08	12428677	14677078	44451905	52	35335											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	23927477	23927484	+	Frame_Shift_Del	DEL	TTAAAGGC	TTAAAGGC	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	TTAAAGGC	TTAAAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	-	23927484	TTAAAGGC	-	23927477	7	5	604	1	0	1	0	1	0	0	0	0	18100	1493	52	0	1066	0	ZNF681	19	23927477	Frame_Shift_Del	DEL	TTAAAGGC	TCGA-DW-5561-01A-01D-1589-08	9250399	23927477	35201506	53	35336											
LGI4	163175	broad.mit.edu	37	19	35622732	35622732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	A	35622732	G	A	35622732	3	1	604	1	0	0	0	0	1	0	0	0	8761	1232	43	2	1214	2	LGI4	19	35622732	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	11695255	35622732	23506251	54	35337											
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30891293	30891293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	30891293	C	T	30891293	3	4	604	1	0	0	0	0	1	0	0	0	13997	768	27	1	887	1	SEC14L4	22	30891293	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08		30891293	20413273	55	35338											
YWHAH	7533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32352660	32352660	+	Silent	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	32352660	C	T	32352660	2	4	604	1	0	0	0	0	0	0	0	1	17516	796	28	2		2	YWHAH	22	32352660	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	1461367	32352660	18951906	56	35339											
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54319393	54319393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	T	54319393	A	T	54319393	3	4	604	1	0	0	0	0	1	0	0	0	17391	214	8	5	3497	5	WNK3	23	54319393	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08		54319393	100951167	57	35340											
FUCA1	2517	hgsc.bcm.edu	37	1	24194770	24194770	+	Missense_Mutation	SNP	C	C	G	rs61996282		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	24194770	C	G	24194770	3	3	605	1	0	0	0	0	1	0	0	0	6101	739	26	4	1425	4	FUCA1	1	24194770	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		24194770	225055851	1	35341											
MYOM3	127294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24421403	24421403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	24421403	G	T	24421403	3	4	605	1	0	0	0	0	1	0	0	0	10100	991	35	4	3561	4	MYOM3	1	24421403	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	226633	24421403	224829218	2	35342											
ARID1A	8289	broad.mit.edu;bcgsc.ca	37	1	27087947	27087947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	27087947	G	A	27087947	3	1	605	1	0	0	0	0	1	0	0	0	913	971	34	2	2256	2	ARID1A	1	27087947	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	2666544	27087947	222162674	3	35343											
PEF1	553115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32100955	32100955	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	32100955	C	A	32100955	4	1	605	1	0	0	0	0	0	1	0	0	11725	603	21	4	677	4	PEF1	1	32100955	Nonsense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	5013008	32100955	217149666	4	35344											
WDR65	149465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43649478	43649478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	43649478	G	C	43649478	3	2	605	1	0	0	0	0	1	0	0	0	17328	1175	41	4	701	4	WDR65	1	43649478	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	11548523	43649478	205601143	5	35345											
DEDD	9191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161092019	161092019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	161092019	A	C	161092019	3	2	605	1	0	0	0	0	1	0	0	0	4386	188	7	5	85	5	DEDD	1	161092019	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	117442541	161092019	88158602	6	35346											
RGS1	5996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	192547354	192547354	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	192547354	G	C	192547354	3	2	605	1	0	0	0	0	1	0	0	0	13305	1348	47	4	297	4	RGS1	1	192547354	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	31455335	192547354	56703267	7	35347											
ELF3	1999	broad.mit.edu	37	1	201980419	201980420	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	201980420	-	G	201980419	7	5	605	1	0	1	1	0	0	0	0	0	5057	304	11	0	157	0	ELF3	1	201980419	Frame_Shift_Ins	INS	-	TCGA-DW-7834-01A-11D-2136-08	9433065	201980419	47270202	8	35348											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208215581	208215581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	208215581	C	T	208215581	3	4	605	1	0	0	0	0	1	0	0	0	12127	652	23	1	1580	1	PLXNA2	1	208215581	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	6235162	208215581	41035040	9	35349											
NUP133	55746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229631732	229631732	+	Silent	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	229631732	G	T	229631732	2	4	605	1	0	0	0	0	0	0	0	1	10761	1280	45	4		4	NUP133	1	229631732	Silent	SNP	G	TCGA-DW-7834-01A-11D-2136-08	21416151	229631732	19618889	10	35350											
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11913751	11913751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	11913751	T	C	11913751	3	2	605	1	0	0	0	0	1	0	0	0	8925	1609	56	3	616	3	LPIN1	2	11913751	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		11913751	231285622	11	35351											
NBAS	51594	hgsc.bcm.edu	37	2	15691633	15691633	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	15691633	A	G	15691633	2	3	605	1	0	0	0	0	0	0	0	1	10193	358	13	3		3	NBAS	2	15691633	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08	3777882	15691633	227507740	12	35352											
ANAPC1	64682	hgsc.bcm.edu	37	2	112615903	112615903	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	112615903	T	C	112615903	2	2	605	1	0	0	0	0	0	0	0	1	598	1509	53	3		3	ANAPC1	2	112615903	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08	96924270	112615903	130583470	13	35353											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137928319	137928319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	137928319	A	G	137928319	3	3	605	1	0	0	0	0	1	0	0	0	15892	43	2	3	1463	3	THSD7B	2	137928319	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	25312416	137928319	105271054	14	35354											
IFIH1	64135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163167397	163167397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	163167397	A	G	163167397	3	3	605	1	0	0	0	0	1	0	0	0	7527	420	15	3	2637	3	IFIH1	2	163167397	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	25239078	163167397	80031976	15	35355											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198274598	198274598	+	Missense_Mutation	SNP	G	G	T	rs1044635	alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	198274598	G	T	198274598	3	4	605	1	0	0	0	0	1	0	0	0	14162	1029	36	4	3190	4	SF3B1	2	198274598	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	35107201	198274598	44924775	16	35356											
MTMR14	64419	broad.mit.edu;bcgsc.ca	37	3	9691346	9691346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	9691346	C	G	9691346	3	3	605	1	0	0	0	0	1	0	0	0	9949	796	28	4	81	4	MTMR14	3	9691346	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		9691346	188331084	17	35357											
DPPA2	151871	broad.mit.edu	37	3	109023471	109023471	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	109023471	T	C	109023471	2	2	605	1	0	0	0	0	0	0	0	1	4736	1799	63	3		3	DPPA2	3	109023471	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08	99332125	109023471	88998959	18	35358											
POU4F2	5458	hgsc.bcm.edu	37	4	147561258	147561258	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	147561258	T	C	147561258	2	2	605	1	0	0	0	0	0	0	0	1	12286	1432	50	3		3	POU4F2	4	147561258	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08		147561258	43593018	19	35359											
DDX60	55601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169172121	169172121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	169172121	C	T	169172121	3	4	605	1	0	0	0	0	1	0	0	0	4380	913	32	2	1340	2	DDX60	4	169172121	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	21610863	169172121	21982155	20	35360											
PALLD	23022	broad.mit.edu	37	4	169433375	169433375	+	Silent	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	169433375	G	A	169433375	2	1	605	1	0	0	0	0	0	0	0	1	11414	1194	42	2		2	PALLD	4	169433375	Silent	SNP	G	TCGA-DW-7834-01A-11D-2136-08	261254	169433375	21720901	21	35361											
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	184166688	184166688	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	184166688	A	C	184166688	3	2	605	1	0	0	0	0	1	0	0	0	17424	333	12	5	744	5	WWC2	4	184166688	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	14733313	184166688	6987588	22	35362											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32074625	32074625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	32074625	G	T	32074625	3	4	605	1	0	0	0	0	1	0	0	0	11708	1029	36	4	3479	4	PDZD2	5	32074625	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08		32074625	148840635	23	35363											
SEPP1	6414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	42807146	42807146	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	42807146	T	A	42807146	3	1	605	1	0	0	0	0	1	0	0	0	14070	1754	61	5	889	5	SEPP1	5	42807146	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	10732521	42807146	138108114	24	35364											
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72383545	72383545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	72383545	A	G	72383545	3	3	605	1	0	0	0	0	1	0	0	0	5795	449	16	3	2473	3	FCHO2	5	72383545	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	29576399	72383545	108531715	25	35365											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82785943	82785943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	82785943	A	T	82785943	3	4	605	1	0	0	0	0	1	0	0	0	17150	295	11	5	103	5	VCAN	5	82785943	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	10402398	82785943	98129317	26	35366											
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30888201	30888201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	30888201	T	C	30888201	3	2	605	1	0	0	0	0	1	0	0	0	17136	1580	55	3	1529	3	VARS2	6	30888201	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		30888201	140226866	27	35367											
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35260658	35260658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	35260658	C	T	35260658	3	4	605	1	0	0	0	0	1	0	0	0	18147	753	26	2	1204	2	ZNF76	6	35260658	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	4372457	35260658	135854409	28	35368											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38709565	38709565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	38709565	A	G	38709565	3	3	605	1	0	0	0	0	1	0	0	0	4609	217	8	3	558	3	DNAH8	6	38709565	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	3448907	38709565	132405502	29	35369											
UBR2	23304	broad.mit.edu	37	6	42610219	42610220	+	Frame_Shift_Ins	INS	-	-	GTAAT	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	GTAAT	42610220	-	GTAAT	42610219	7	5	605	1	0	1	1	0	0	0	0	0	16914	1014	35	0	2313	0	UBR2	6	42610219	Frame_Shift_Ins	INS	-	TCGA-DW-7834-01A-11D-2136-08	3900654	42610219	128504848	30	35370											
RUNX2	860	hgsc.bcm.edu;broad.mit.edu	37	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	45390466	A	G	45390466	2	3	605	1	0	0	0	0	0	0	0	1	13761	40	2	3		3	RUNX2	6	45390466	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08	2780247	45390466	125724601	31	35371											
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	69943243	69943243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	69943243	C	T	69943243	3	4	605	1	0	0	0	0	1	0	0	0	1300	594	21	2	2604	2	BAI3	6	69943243	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	24552777	69943243	101171824	32	35372											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117245902	117245902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	117245902	T	A	117245902	3	1	605	1	0	0	0	0	1	0	0	0	13280	1461	51	5	1684	5	RFX6	6	117245902	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	47302659	117245902	53869165	33	35373											
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44152208	44152208	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	44152208	G	C	44152208	3	2	605	1	0	0	0	0	1	0	0	0	349	1145	40	4	2339	4	AEBP1	7	44152208	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08		44152208	114986455	34	35374											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44714122	44714122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	44714122	G	A	44714122	3	1	605	1	0	0	0	0	1	0	0	0	10846	1348	47	2	1018	2	OGDH	7	44714122	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	561914	44714122	114424541	35	35375											
VSTM2A	222008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	54617692	54617692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	54617692	C	T	54617692	3	4	605	1	0	0	0	0	1	0	0	0	17241	652	23	1	477	1	VSTM2A	7	54617692	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	9903570	54617692	104520971	36	35376											
FEZF1	389549	broad.mit.edu	37	7	121944146	121944146	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	121944146	T	G	121944146	3	3	605	1	0	0	0	0	1	0	0	0	5832	1580	55	5	1097	5	FEZF1	7	121944146	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	67326454	121944146	37194517	37	35377											
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10390473	10390473	+	Nonsense_Mutation	SNP	G	G	A	rs150767306	alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	10390473	G	A	10390473	4	1	605	1	0	0	0	0	0	1	0	0	12644	1357	47	2	670	2	PRSS55	8	10390473	Nonsense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08		10390473	135973549	38	35378											
NR5A1	2516	hgsc.bcm.edu	37	9	127262609	127262609	+	Silent	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	127262609	C	A	127262609	2	1	605	1	0	0	0	0	0	0	0	1	10642	523	19	4		4	NR5A1	9	127262609	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08		127262609	13950822	39	35379											
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55570392	55570392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	55570392	C	T	55570392	3	4	605	1	0	0	0	0	1	0	0	0	11518	884	31	1	1493	1	PCDH15	10	55570392	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		55570392	79964355	40	35380											
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91498338	91498338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	91498338	A	C	91498338	3	2	605	1	0	0	0	0	1	0	0	0	8294	246	9	5	3694	5	KIF20B	10	91498338	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	35927946	91498338	44036409	41	35381											
TRIM8	81603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104404881	104404881	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	104404881	C	T	104404881	2	4	605	1	0	0	0	0	0	0	0	1	16560	576	20	2		2	TRIM8	10	104404881	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	12906543	104404881	31129866	42	35382											
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48149503	48149503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	48149503	C	T	48149503	3	4	605	1	0	0	0	0	1	0	0	0	12817	623	22	2	1291	2	PTPRJ	11	48149503	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		48149503	86857013	43	35383											
NAALADL1	10004	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	64822081	64822081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	64822081	C	T	64822081	3	4	605	1	0	0	0	0	1	0	0	0	10136	864	30	2	1545	2	NAALADL1	11	64822081	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	16672578	64822081	70184435	44	35384											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117860196	117860196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	117860196	C	A	117860196	3	1	605	1	0	0	0	0	1	0	0	0	7627	738	26	4	238	4	IL10RA	11	117860196	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	53038115	117860196	17146320	45	35385											
DDX25	29118	hgsc.bcm.edu	37	11	125786980	125786980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	125786980	A	G	125786980	3	3	605	1	0	0	0	0	1	0	0	0	4354	304	11	3	906	3	DDX25	11	125786980	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	7926784	125786980	9219536	46	35386											
PZP	5858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9356427	9356427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	9356427	T	A	9356427	3	1	605	1	0	0	0	0	1	0	0	0	12882	1838	64	5	4384	5	PZP	12	9356427	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		9356427	124495468	47	35387											
DNAJC22	79962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49743366	49743366	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	49743366	T	C	49743366	2	2	605	1	0	0	0	0	0	0	0	1	4643	1770	62	3		3	DNAJC22	12	49743366	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08	40386939	49743366	84108529	48	35388											
CKAP2	26586	hgsc.bcm.edu	37	13	53042433	53042433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	53042433	C	G	53042433	3	3	605	1	0	0	0	0	1	0	0	0	3444	477	17	4	1526	4	CKAP2	13	53042433	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		53042433	62127445	49	35389											
GPR18	2841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99908051	99908051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	99908051	G	C	99908051	3	2	605	1	0	0	0	0	1	0	0	0	6682	1000	35	4	923	4	GPR18	13	99908051	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	46865618	99908051	15261827	50	35390											
SLC7A8	23428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23607203	23607203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	23607203	C	T	23607203	3	4	605	1	0	0	0	0	1	0	0	0	14717	739	26	2	684	2	SLC7A8	14	23607203	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		23607203	83742337	51	35391											
EIF2S1	1965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67848335	67848335	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	67848335	T	C	67848335	2	2	605	1	0	0	0	0	0	0	0	1	5011	1471	51	3		3	EIF2S1	14	67848335	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08	44241132	67848335	39501205	52	35392											
CACNA1H	8912	hgsc.bcm.edu	37	16	1245531	1245531	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	1245531	T	G	1245531	3	3	605	1	0	0	0	0	1	0	0	0	2547	1696	59	5	521	5	CACNA1H	16	1245531	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		1245531	89109222	53	35393											
NUBP2	10101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1836594	1836594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	1836594	G	C	1836594	3	2	605	1	0	0	0	0	1	0	0	0	10723	1232	43	4	79	4	NUBP2	16	1836594	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	591063	1836594	88518159	54	35394											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	2059674	T	C	2059674	3	2	605	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	223080	2059674	88295079	55	35395											
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27720066	27720066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	27720066	T	C	27720066	3	2	605	1	0	0	0	0	1	0	0	0	8190	1435	50	3	1480	3	KIAA0556	16	27720066	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	25660392	27720066	62634687	56	35396											
SNX20	124460	bcgsc.ca	37	16	50707452	50707452	+	Silent	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	50707452	G	T	50707452	2	4	605	1	0	0	0	0	0	0	0	1	14905	1335	47	4		4	SNX20	16	50707452	Silent	SNP	G	TCGA-DW-7834-01A-11D-2136-08	22987386	50707452	39647301	57	35397											
CDH15	1013	hgsc.bcm.edu	37	16	89261313	89261313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	89261313	A	G	89261313	3	3	605	1	0	0	0	0	1	0	0	0	3102	275	10	3	2249	3	CDH15	16	89261313	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	38553861	89261313	1093440	58	35398											
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	18212208	18212208	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	18212208	A	G	18212208	2	3	605	1	0	0	0	0	0	0	0	1	16379	330	12	3		3	TOP3A	17	18212208	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08		18212208	62983002	59	35399											
MED1	5469	bcgsc.ca	37	17	37565188	37565188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	37565188	T	C	37565188	3	2	605	1	0	0	0	0	1	0	0	0	9432	1609	56	3	1463	3	MED1	17	37565188	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	19352980	37565188	43630022	60	35400											
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42945230	42945230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	42945230	G	A	42945230	3	1	605	1	0	0	0	0	1	0	0	0	4963	1174	41	2	1888	2	EFTUD2	17	42945230	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	5380042	42945230	38249980	61	35401											
WNT3	7473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	44845986	44845986	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	44845986	C	T	44845986	2	4	605	1	0	0	0	0	0	0	0	1	17400	581	21	2		2	WNT3	17	44845986	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	1900756	44845986	36349224	62	35402											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	78321576	78321576	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	78321576	C	T	78321576	2	4	605	1	0	0	0	0	0	0	0	1	13490	726	26	2		2	RNF213	17	78321576	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	33475590	78321576	2873634	63	35403											
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	65181492	65181492	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	65181492	A	G	65181492	2	3	605	1	0	0	0	0	0	0	0	1	4777	214	8	3		3	DSEL	18	65181492	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08		65181492	12895756	64	35404											
CFD	1675	hgsc.bcm.edu;broad.mit.edu	37	19	860929	860929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	860929	T	G	860929	3	3	605	1	0	0	0	0	1	0	0	0	3283	1580	55	5	291	5	CFD	19	860929	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		860929	58268054	65	35405											
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	2151253	2151253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	2151253	G	C	2151253	3	2	605	1	0	0	0	0	1	0	0	0	746	1252	44	4	3658	4	AP3D1	19	2151253	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	1290324	2151253	56977730	66	35406											
ARHGEF18	23370	hgsc.bcm.edu	37	19	7533786	7533786	+	Missense_Mutation	SNP	G	G	A	rs180746700		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	7533786	G	A	7533786	3	1	605	1	0	0	0	0	1	0	0	0	901	1116	39	1	3058	1	ARHGEF18	19	7533786	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	5382533	7533786	51595197	67	35407											
PTGER1	5731	broad.mit.edu	37	19	14584193	14584193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	14584193	G	T	14584193	3	4	605	1	0	0	0	0	1	0	0	0	12753	962	34	4	276	4	PTGER1	19	14584193	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	7050407	14584193	44544790	68	35408											
SLC27A1	376497	hgsc.bcm.edu	37	19	17597401	17597401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	17597401	T	C	17597401	3	2	605	1	0	0	0	0	1	0	0	0	14538	1580	55	3	203	3	SLC27A1	19	17597401	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	3013208	17597401	41531582	69	35409											
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40478461	40478461	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	40478461	A	G	40478461	2	3	605	1	0	0	0	0	0	0	0	1	12699	202	7	3		3	PSMC4	19	40478461	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08	22881060	40478461	18650522	70	35410											
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42861598	42861598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	42861598	C	G	42861598	3	3	605	1	0	0	0	0	1	0	0	0	9470	681	24	4	4778	4	MEGF8	19	42861598	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	2383137	42861598	16267385	71	35411											
ZNF8	7554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58805588	58805588	+	Silent	SNP	G	G	A	rs35832841	byfrequency;alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	58805588	G	A	58805588	2	1	605	1	0	0	0	0	0	0	0	1	18179	1161	41	2		2	ZNF8	19	58805588	Silent	SNP	G	TCGA-DW-7834-01A-11D-2136-08	15943990	58805588	323395	72	35412											
CHD6	84181	broad.mit.edu	37	20	40033403	40033405	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	-	40033405	TCT	-	40033403	7	5	605	1	0	1	0	1	0	0	0	0	3331	1667	58	0	173	0	CHD6	20	40033403	In_Frame_Del	DEL	TCT	TCGA-DW-7834-01A-11D-2136-08		40033403	22992117	73	35413											
PMEPA1	56937	broad.mit.edu	37	20	56227616	56227616	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	56227616	C	T	56227616	2	4	605	1	0	0	0	0	0	0	0	1	12139	581	21	2		2	PMEPA1	20	56227616	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	16194213	56227616	6797904	74	35414											
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61468580	61468580	+	Silent	SNP	C	C	T	rs144216578		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	61468580	C	T	61468580	2	4	605	1	0	0	0	0	0	0	0	1	3711	755	27	1		1	COL9A3	20	61468580	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	5240964	61468580	1556940	75	35415											
DIDO1	11083	ucsc.edu	37	20	61512320	61512320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	61512320	G	T	61512320	3	4	605	1	0	0	0	0	1	0	0	0	4524	1116	39	4	1738	4	DIDO1	20	61512320	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	43740	61512320	1513200	76	35416											
NRIP1	8204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	16337670	16337670	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	16337670	A	G	16337670	2	3	605	1	0	0	0	0	0	0	0	1	10659	98	4	3		3	NRIP1	21	16337670	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08		16337670	31792225	77	35417											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22658662	22658662	+	Silent	SNP	A	A	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	22658662	A	T	22658662	2	4	605	1	0	0	0	0	0	0	0	1	10210	291	11	5		5	NCAM2	21	22658662	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08	6320992	22658662	25471233	78	35418											
SON	6651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	34932382	34932382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	G	34932382	A	G	34932382	3	3	605	1	0	0	0	0	1	0	0	0	14939	43	2	3	6883	3	SON	21	34932382	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	12273720	34932382	13197513	79	35419											
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18021911	18021911	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	18021911	C	T	18021911	2	4	605	1	0	0	0	0	0	0	0	1	3208	776	27	1		1	CECR2	22	18021911	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08		18021911	33282655	80	35420											
RHBDD3	25807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29656765	29656765	+	Silent	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	A	29656765	C	A	29656765	2	1	605	1	0	0	0	0	0	0	0	1	13331	494	18	4		4	RHBDD3	22	29656765	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	11634854	29656765	21647801	81	35421											
RPS6KA3	6197	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20194424	20194424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	T	20194424	C	T	20194424	3	4	605	1	0	0	0	0	1	0	0	0	13665	739	26	2	1216	2	RPS6KA3	23	20194424	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		20194424	135076136	82	35422											
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135314169	135314169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	C	135314169	T	C	135314169	3	2	605	1	0	0	0	0	1	0	0	0	9276	1725	60	3	1727	3	MAP7D3	23	135314169	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	115119745	135314169	19956391	83	35423											
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	15890499	15890500	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	-	15890500	GA	-	15890499	7	5	606	1	0	1	0	1	0	0	0	0	4637	1291	45	0	1448	0	DNAJC16	1	15890499	Frame_Shift_Del	DEL	GA	TCGA-DW-7837-01A-11D-2136-08		15890499	233360122	1	35424											
CYP4A22	284541	ucsc.edu	37	1	47614339	47614339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	47614339	G	A	47614339	3	1	606	1	0	0	0	0	1	0	0	0	4186	1087	38	1	1476	1	CYP4A22	1	47614339	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08	31723840	47614339	201636282	2	35425											
SSBP3	23648	hgsc.bcm.edu	37	1	54694017	54694017	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	54694017	T	G	54694017	3	3	606	1	0	0	0	0	1	0	0	0	15193	1812	63	5	126	5	SSBP3	1	54694017	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	7079678	54694017	194556604	3	35426											
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	77528824	77528824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	77528824	T	G	77528824	3	3	606	1	0	0	0	0	1	0	0	0	15239	1841	64	5	962	5	ST6GALNAC5	1	77528824	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	22834807	77528824	171721797	4	35427			1	70		2	2	12	N	T_G	1.492393e-05
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	77528835	77528835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	77528835	G	A	77528835	3	1	606	1	0	0	0	0	1	0	0	0	15239	942	33	2	973	2	ST6GALNAC5	1	77528835	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08	11	77528835	171721786	5	35428			1	70		2	2	12	N	T_G	1.492393e-05
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	122206659	122206659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	T	122206659	C	T	122206659	3	4	606	1	0	0	0	0	1	0	0	0	3456	797	28	2	3203	2	CLASP1	2	122206659	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08		122206659	120992714	6	35429											
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	180309603	180309603	+	Silent	SNP	T	T	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	180309603	T	A	180309603	2	1	606	1	0	0	0	0	0	0	0	1	17889	1594	55	5		5	ZNF385B	2	180309603	Silent	SNP	T	TCGA-DW-7837-01A-11D-2136-08	58102944	180309603	62889770	7	35430											
ALPP	250	hgsc.bcm.edu	37	2	233244230	233244230	+	Missense_Mutation	SNP	A	A	G	rs1130341		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	233244230	A	G	233244230	3	3	606	1	0	0	0	0	1	0	0	0	548	101	4	3	331	3	ALPP	2	233244230	Missense_Mutation	SNP	A	TCGA-DW-7837-01A-11D-2136-08	52934627	233244230	9955143	8	35431											
USP40	55230	hgsc.bcm.edu	37	2	234450984	234450984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	234450984	T	G	234450984	3	3	606	1	0	0	0	0	1	0	0	0	17084	1493	52	5	2811	5	USP40	2	234450984	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	1206754	234450984	8748389	9	35432											
DPH3	285381	hgsc.bcm.edu;bcgsc.ca	37	3	16302327	16302327	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	16302327	C	G	16302327	3	3	606	1	0	0	0	0	1	0	0	0	4723	478	17	4	59	4	DPH3	3	16302327	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08		16302327	181720103	10	35433											
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169337906	169337906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	169337906	G	A	169337906	3	1	606	1	0	0	0	0	1	0	0	0	4381	971	34	2	2543	2	DDX60L	4	169337906	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08		169337906	21816370	11	35434											
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	56177037	56177037	+	Silent	SNP	T	T	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	56177037	T	A	56177037	2	1	606	1	0	0	0	0	0	0	0	1	9250	1567	55	5		5	MAP3K1	5	56177037	Silent	SNP	T	TCGA-DW-7837-01A-11D-2136-08		56177037	124738223	12	35435											
C4A	720	hgsc.bcm.edu	37	6	31964785	31964785	+	Silent	SNP	T	T	G	rs9501603	bycluster;by2hit2allele;byhapmap	TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	31964785	T	G	31964785	2	3	606	1	0	0	0	0	0	0	0	1	2249	1783	62	5		5	C4A	6	31964785	Silent	SNP	T	TCGA-DW-7837-01A-11D-2136-08		31964785	139150282	13	35436											
DUS4L	11062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107216872	107216872	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	107216872	T	A	107216872	3	1	606	1	0	0	0	0	1	0	0	0	4810	1783	62	5	559	5	DUS4L	7	107216872	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08		107216872	51921791	14	35437											
TRIM24	8805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	138145434	138145434	+	Silent	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	138145434	G	A	138145434	2	1	606	1	0	0	0	0	0	0	0	1	16510	1103	39	1		1	TRIM24	7	138145434	Silent	SNP	G	TCGA-DW-7837-01A-11D-2136-08	30928562	138145434	20993229	15	35438											
CLU	1191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27457323	27457323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	27457323	C	G	27457323	3	3	606	1	0	0	0	0	1	0	0	0	3570	913	32	4	223	4	CLU	8	27457323	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08		27457323	118906699	16	35439											
FGFR1	2260	ucsc.edu	37	8	38287416	38287416	+	Missense_Mutation	SNP	C	C	T	rs121909640		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	T	38287416	C	T	38287416	3	4	606	1	0	0	0	0	1	0	0	0	5870	652	23	1	2630	1	FGFR1	8	38287416	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08	10830093	38287416	108076606	17	35440											
POP1	10940	hgsc.bcm.edu	37	8	99140760	99140760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	99140760	C	G	99140760	3	3	606	1	0	0	0	0	1	0	0	0	12258	595	21	4	488	4	POP1	8	99140760	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08	60853344	99140760	47223262	18	35441											
GPT	2875	broad.mit.edu;bcgsc.ca	37	8	145730807	145730807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	C	145730807	T	C	145730807	3	2	606	1	0	0	0	0	1	0	0	0	6744	1580	55	3	692	3	GPT	8	145730807	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	46590047	145730807	633215	19	35442											
ABL1	25	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	133759489	133759489	+	Silent	SNP	C	C	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	133759489	C	A	133759489	2	1	606	1	0	0	0	0	0	0	0	1	92	816	29	4		4	ABL1	9	133759489	Silent	SNP	C	TCGA-DW-7837-01A-11D-2136-08		133759489	7453942	20	35443											
PRPF18	8559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13658431	13658431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	13658431	A	G	13658431	3	3	606	1	0	0	0	0	1	0	0	0	12573	14	1	3	860	3	PRPF18	10	13658431	Missense_Mutation	SNP	A	TCGA-DW-7837-01A-11D-2136-08		13658431	121876316	21	35444											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	16957909	16957910	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	16957910	-	A	16957909	7	5	606	1	0	1	1	0	0	0	0	0	4053	1406	49	0	3838	0	CUBN	10	16957909	Frame_Shift_Ins	INS	-	TCGA-DW-7837-01A-11D-2136-08	3299478	16957909	118576838	22	35445											
PTPRCAP	5790	broad.mit.edu;bcgsc.ca	37	11	67203274	67203287	+	Frame_Shift_Del	DEL	GCAAAGGCGTGCAG	GCAAAGGCGTGCAG	-	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	GCAAAGGCGTGCAG	GCAAAGGCGTGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	-	67203287	GCAAAGGCGTGCAG	-	67203274	7	5	606	1	0	1	0	1	0	0	0	0	12811	971	34	0	73	0	PTPRCAP	11	67203274	Frame_Shift_Del	DEL	GCAAAGGCGTGCAG	TCGA-DW-7837-01A-11D-2136-08		67203274	67803242	23	35446											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73066676	73066676	+	Silent	SNP	C	C	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	73066676	C	G	73066676	2	3	606	1	0	0	0	0	0	0	0	1	900	668	24	4		4	ARHGEF17	11	73066676	Silent	SNP	C	TCGA-DW-7837-01A-11D-2136-08	5863402	73066676	61939840	24	35447											
HEPHL1	341208	hgsc.bcm.edu	37	11	93806328	93806328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	C	93806328	T	C	93806328	3	2	606	1	0	0	0	0	1	0	0	0	7062	1609	56	3	1396	3	HEPHL1	11	93806328	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	20739652	93806328	41200188	25	35448											
AMOTL1	154810	broad.mit.edu;ucsc.edu	37	11	94532582	94532582	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	94532582	T	G	94532582	3	3	606	1	0	0	0	0	1	0	0	0	583	1551	54	5	236	5	AMOTL1	11	94532582	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	726254	94532582	40473934	26	35449											
MCF2L	23263	bcgsc.ca	37	13	113728835	113728835	+	Silent	SNP	G	G	A	rs146333822	byfrequency;alternate_allele	TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	113728835	G	A	113728835	2	1	606	1	0	0	0	0	0	0	0	1	9386	962	34	2		2	MCF2L	13	113728835	Silent	SNP	G	TCGA-DW-7837-01A-11D-2136-08		113728835	1441043	27	35450											
FMN1	342184	hgsc.bcm.edu	37	15	33066522	33066522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	C	33066522	T	C	33066522	3	2	606	1	0	0	0	0	1	0	0	0	5956	1667	58	3	14	3	FMN1	15	33066522	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08		33066522	69464870	28	35451											
RAB11A	8766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	66180113	66180113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	C	66180113	G	C	66180113	3	2	606	1	0	0	0	0	1	0	0	0	12904	1261	44	4	604	4	RAB11A	15	66180113	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08	33113591	66180113	36351279	29	35452											
GSPT1	2935	hgsc.bcm.edu	37	16	12009529	12009529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	C	12009529	T	C	12009529	3	2	606	1	0	0	0	0	1	0	0	0	6833	1551	54	3	1924	3	GSPT1	16	12009529	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08		12009529	78345224	30	35453											
RSPRY1	89970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57265132	57265132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	57265132	A	G	57265132	3	3	606	1	0	0	0	0	1	0	0	0	13726	101	4	3	1476	3	RSPRY1	16	57265132	Missense_Mutation	SNP	A	TCGA-DW-7837-01A-11D-2136-08	45255603	57265132	33089621	31	35454											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15935762	15935762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	C	15935762	G	C	15935762	3	2	606	1	0	0	0	0	1	0	0	0	10242	1086	38	4	155	4	NCOR1	17	15935762	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08		15935762	65259448	32	35455											
RND2	8153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41180521	41180521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	41180521	G	A	41180521	3	1	606	1	0	0	0	0	1	0	0	0	13433	1145	40	1	526	1	RND2	17	41180521	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08	25244759	41180521	40014689	33	35456											
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74005355	74005355	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	G	74005355	T	G	74005355	3	3	606	1	0	0	0	0	1	0	0	0	5294	1821	63	5	2174	5	EVPL	17	74005355	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	32824834	74005355	7189855	34	35457											
FASN	2194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80053200	80053200	+	Silent	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	80053200	G	A	80053200	2	1	606	1	0	0	0	0	0	0	0	1	5690	1136	40	1		1	FASN	17	80053200	Silent	SNP	G	TCGA-DW-7837-01A-11D-2136-08	6047845	80053200	1142010	35	35458											
ZNF536	9745	broad.mit.edu	37	19	31039693	31039693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	T	31039693	C	T	31039693	3	4	606	1	0	0	0	0	1	0	0	0	17986	893	31	1	3177	1	ZNF536	19	31039693	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08		31039693	28089290	36	35459											
MEGF8	1954	ucsc.edu;bcgsc.ca	37	19	42861619	42861619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	C	42861619	T	C	42861619	3	2	606	1	0	0	0	0	1	0	0	0	9470	1667	58	3	4799	3	MEGF8	19	42861619	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	11821926	42861619	16267364	37	35460											
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56539072	56539072	+	Silent	SNP	C	C	T	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	T	56539072	C	T	56539072	2	4	606	1	0	0	0	0	0	0	0	1	10487	871	31	1		1	NLRP5	19	56539072	Silent	SNP	C	TCGA-DW-7837-01A-11D-2136-08	13677453	56539072	2589911	38	35461											
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33591257	33591257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	T	33591257	G	T	33591257	3	4	606	1	0	0	0	0	1	0	0	0	16593	1328	46	4	189	4	TRPC4AP	20	33591257	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08		33591257	29434263	39	35462											
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62078166	62078166	+	Silent	SNP	G	G	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	C	62078166	G	C	62078166	2	2	606	1	0	0	0	0	0	0	0	1	8090	1045	37	4		4	KCNQ2	20	62078166	Silent	SNP	G	TCGA-DW-7837-01A-11D-2136-08	28486909	62078166	947354	40	35463											
RFPL2	10739	ucsc.edu	37	22	32598347	32598347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	A	32598347	G	A	32598347	3	1	606	1	0	0	0	0	1	0	0	0	13267	1319	46	2	1142	2	RFPL2	22	32598347	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08		32598347	18706219	41	35464											
RPS6KA3	6197	hgsc.bcm.edu	37	X	20195138	20195138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	C	20195138	T	C	20195138	3	2	606	1	0	0	0	0	1	0	0	0	13665	1821	63	3	1360	3	RPS6KA3	23	20195138	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08		20195138	135075422	42	35465											
PEX14	5195	hgsc.bcm.edu	37	1	10535061	10535061	+	Splice_Site	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	10535061	T	C	10535061	5	2	607	1	0	0	0	0	0	0	1	0	11749	1652	57	3	40	3	PEX14	1	10535061	Splice_Site	SNP	T	TCGA-DW-7838-01A-11D-2136-08		10535061	238715560	1	35466											
TRIM63	84676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26386776	26386776	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	26386776	T	A	26386776	3	1	607	1	0	0	0	0	1	0	0	0	16550	1435	50	5	507	5	TRIM63	1	26386776	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	15851715	26386776	222863845	2	35467											
SERINC2	347735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31897695	31897695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	31897695	G	A	31897695	3	1	607	1	0	0	0	0	1	0	0	0	14093	1174	41	2	377	2	SERINC2	1	31897695	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	5510919	31897695	217352926	3	35468											
KIF2C	11004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45206651	45206651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	45206651	C	A	45206651	3	1	607	1	0	0	0	0	1	0	0	0	8306	710	25	4	143	4	KIF2C	1	45206651	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	13308956	45206651	204043970	4	35469											
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109554105	109554105	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	109554105	T	-	109554105	7	5	607	1	0	1	0	1	0	0	0	0	17312	1609	56	0	2243	0	WDR47	1	109554105	Frame_Shift_Del	DEL	T	TCGA-DW-7838-01A-11D-2136-08	64347454	109554105	139696516	5	35470											
ST7L	54879	bcgsc.ca	37	1	113119657	113119657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	113119657	G	A	113119657	3	1	607	1	0	0	0	0	1	0	0	0	15242	1203	42	2	590	2	ST7L	1	113119657	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	3565552	113119657	136130964	6	35471											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145561665	145561665	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	145561665	C	T	145561665	2	4	607	1	0	0	0	0	0	0	0	1	664	668	24	2		2	ANKRD35	1	145561665	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	32442008	145561665	103688956	7	35472											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152191362	152191362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	152191362	G	A	152191362	3	1	607	1	0	0	0	0	1	0	0	0	7366	1057	37	1	5813	1	HRNR	1	152191362	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	6629697	152191362	97059259	8	35473											
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154961016	154961016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	154961016	G	A	154961016	3	1	607	1	0	0	0	0	1	0	0	0	5927	1233	43	2	889	2	FLAD1	1	154961016	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	2769654	154961016	94289605	9	35474											
OBSCN	84033	hgsc.bcm.edu	37	1	228522554	228522554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	228522554	A	G	228522554	3	3	607	1	0	0	0	0	1	0	0	0	10819	295	11	3	16364	3	OBSCN	1	228522554	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	73561538	228522554	20728067	10	35475											
ADCY3	109	bcgsc.ca	37	2	25141697	25141697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	25141697	G	A	25141697	3	1	607	1	0	0	0	0	1	0	0	0	295	1086	38	1	3358	1	ADCY3	2	25141697	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		25141697	218057676	11	35476											
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74761483	74761483	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	74761483	G	A	74761483	2	1	607	1	0	0	0	0	0	0	0	1	8908	1368	48	2		2	LOXL3	2	74761483	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	49619786	74761483	168437890	12	35477											
POLR1A	25885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86279952	86279952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	86279952	C	T	86279952	3	4	607	1	0	0	0	0	1	0	0	0	12216	681	24	2	2858	2	POLR1A	2	86279952	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	11518469	86279952	156919421	13	35478											
TUBA3D	113457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	132236969	132236969	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	132236969	G	A	132236969	2	1	607	1	0	0	0	0	0	0	0	1	16759	1223	43	2		2	TUBA3D	2	132236969	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	45957017	132236969	110962404	14	35479											
FIGN	55137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	164466515	164466515	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	164466515	A	T	164466515	3	4	607	1	0	0	0	0	1	0	0	0	5898	243	9	5	456	5	FIGN	2	164466515	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	32229546	164466515	78732858	15	35480											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179650403	179650403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	179650403	T	A	179650403	3	1	607	1	0	0	0	0	1	0	0	0	16747	1522	53	5	108943	5	TTN	2	179650403	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	15183888	179650403	63548970	16	35481											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238303376	238303376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	238303376	A	G	238303376	3	3	607	1	0	0	0	0	1	0	0	0	3703	449	16	3	9185	3	COL6A3	2	238303376	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	58652973	238303376	4895997	17	35482											
RNPEPL1	57140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241516157	241516157	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	241516157	C	T	241516157	2	4	607	1	0	0	0	0	0	0	0	1	13523	842	30	2		2	RNPEPL1	2	241516157	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	3212781	241516157	1683216	18	35483											
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47456625	47456625	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	47456625	C	T	47456625	2	4	607	1	0	0	0	0	0	0	0	1	13890	593	21	2		2	SCAP	3	47456625	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08		47456625	150565805	19	35484											
C3orf18	51161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50602964	50602964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	50602964	G	A	50602964	3	1	607	1	0	0	0	0	1	0	0	0	2213	1145	40	1	337	1	C3orf18	3	50602964	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	3146339	50602964	147419466	20	35485											
BBX	56987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	107491690	107491690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	107491690	G	C	107491690	3	2	607	1	0	0	0	0	1	0	0	0	1343	991	35	4	1152	4	BBX	3	107491690	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	56888726	107491690	90530740	21	35486											
ADCY5	111	broad.mit.edu	37	3	123166392	123166392	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	123166392	A	-	123166392	7	5	607	1	0	1	0	1	0	0	0	0	297	246	9	0	2868	0	ADCY5	3	123166392	Frame_Shift_Del	DEL	A	TCGA-DW-7838-01A-11D-2136-08	15674702	123166392	74856038	22	35487											
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184922367	184922367	+	Silent	SNP	G	G	A	rs149294851	alternate_allele	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	184922367	G	A	184922367	2	1	607	1	0	0	0	0	0	0	0	1	4984	1280	45	2		2	EHHADH	3	184922367	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	61755975	184922367	13100063	23	35488											
MFSD10	10227	hgsc.bcm.edu	37	4	2934901	2934901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	2934901	G	C	2934901	3	2	607	1	0	0	0	0	1	0	0	0	9535	933	33	4	1103	4	MFSD10	4	2934901	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		2934901	188219375	24	35489											
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	6066676	6066676	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	6066676	C	T	6066676	2	4	607	1	0	0	0	0	0	0	0	1	7947	477	17	2		2	JAKMIP1	4	6066676	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	3131775	6066676	185087600	25	35490											
RELL1	768211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	37650975	37650975	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	37650975	T	A	37650975	3	1	607	1	0	0	0	0	1	0	0	0	13231	1696	59	5	599	5	RELL1	4	37650975	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	31584299	37650975	153503301	26	35491											
DMP1	1758	broad.mit.edu	37	4	88583660	88583660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	88583660	G	A	88583660	3	1	607	1	0	0	0	0	1	0	0	0	4585	943	33	2	748	2	DMP1	4	88583660	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	50932685	88583660	102570616	27	35492											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104070327	104070327	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	104070327	A	T	104070327	3	4	607	1	0	0	0	0	1	0	0	0	3232	14	1	5	4562	5	CENPE	4	104070327	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	15486667	104070327	87083949	28	35493											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	89953910	89953915	+	In_Frame_Del	DEL	AAATCA	AAATCA	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	AAATCA	AAATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	89953915	AAATCA	-	89953910	7	5	607	1	0	1	0	1	0	0	0	0	6728	131	5	0	4649	0	GPR98	5	89953910	In_Frame_Del	DEL	AAATCA	TCGA-DW-7838-01A-11D-2136-08		89953910	90961350	29	35494											
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118824931	118824931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	118824931	C	T	118824931	3	4	607	1	0	0	0	0	1	0	0	0	7393	681	24	2	701	2	HSD17B4	5	118824931	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	28871021	118824931	62090329	30	35495											
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	123980011	123980011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	123980011	G	A	123980011	3	1	607	1	0	0	0	0	1	0	0	0	18046	1000	35	2	509	2	ZNF608	5	123980011	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	5155080	123980011	56935249	31	35496											
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46867766	46867766	+	Missense_Mutation	SNP	C	C	A	rs145334563	byfrequency;alternate_allele	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	46867766	C	A	46867766	3	1	607	1	0	0	0	0	1	0	0	0	6640	666	23	4	3959	4	GPR116	6	46867766	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		46867766	124247301	32	35497											
COL9A1	1297	hgsc.bcm.edu;bcgsc.ca	37	6	70944522	70944522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	70944522	C	A	70944522	3	1	607	1	0	0	0	0	1	0	0	0	3709	739	26	4	551	4	COL9A1	6	70944522	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	24076756	70944522	100170545	33	35498											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117249981	117249981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	117249981	C	A	117249981	3	1	607	1	0	0	0	0	1	0	0	0	13280	827	29	4	2528	4	RFX6	6	117249981	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	46305459	117249981	53865086	34	35499											
HEBP2	23593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	138727187	138727187	+	Silent	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	138727187	C	A	138727187	2	1	607	1	0	0	0	0	0	0	0	1	7044	581	21	4		4	HEBP2	6	138727187	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	21477206	138727187	32387880	35	35500											
PMS2	5395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6035170	6035170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	6035170	C	T	6035170	3	4	607	1	0	0	0	0	1	0	0	0	12150	797	28	2	1722	2	PMS2	7	6035170	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		6035170	153103493	36	35501											
POU6F2	11281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	39446255	39446255	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	39446255	C	T	39446255	2	4	607	1	0	0	0	0	0	0	0	1	12292	581	21	2		2	POU6F2	7	39446255	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	33411085	39446255	119692408	37	35502											
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44805818	44805818	+	Silent	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	44805818	C	G	44805818	2	3	607	1	0	0	0	0	0	0	0	1	17709	581	21	4		4	ZMIZ2	7	44805818	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	5359563	44805818	114332845	38	35503											
DMTF1	9988	hgsc.bcm.edu;broad.mit.edu	37	7	86808890	86808890	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	86808890	C	-	86808890	7	5	607	1	0	1	0	1	0	0	0	0	4594	816	29	0	571	0	DMTF1	7	86808890	Frame_Shift_Del	DEL	C	TCGA-DW-7838-01A-11D-2136-08	42003072	86808890	72329773	39	35504											
ABCB4	5244	hgsc.bcm.edu;bcgsc.ca	37	7	87051487	87051487	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	87051487	A	G	87051487	2	3	607	1	0	0	0	0	0	0	0	1	43	11	1	3		3	ABCB4	7	87051487	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	242597	87051487	72087176	40	35505											
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99454477	99454477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	99454477	C	A	99454477	3	1	607	1	0	0	0	0	1	0	0	0	4181	479	17	4	854	4	CYP3A43	7	99454477	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	12402990	99454477	59684186	41	35506											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100361742	100361742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	100361742	C	T	100361742	3	4	607	1	0	0	0	0	1	0	0	0	17525	478	17	2	4272	2	ZAN	7	100361742	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	907265	100361742	58776921	42	35507											
CPA4	51200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129962495	129962495	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	129962495	T	C	129962495	2	2	607	1	0	0	0	0	0	0	0	1	3794	1461	51	3		3	CPA4	7	129962495	Silent	SNP	T	TCGA-DW-7838-01A-11D-2136-08	29600753	129962495	29176168	43	35508	463	2									
CPA4	51200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129962499	129962499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	129962499	C	T	129962499	3	4	607	1	0	0	0	0	1	0	0	0	3794	759	27	1	1291	1	CPA4	7	129962499	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	4	129962499	29176164	44	35509	463	2									
AKR1B15	441282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134260620	134260620	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	134260620	C	T	134260620	2	4	607	1	0	0	0	0	0	0	0	1	468	747	26	2		2	AKR1B15	7	134260620	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	4298121	134260620	24878043	45	35510											
SVOPL	136306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138281232	138281232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	138281232	G	A	138281232	3	1	607	1	0	0	0	0	1	0	0	0	15436	1294	45	2	89	2	SVOPL	7	138281232	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	4020612	138281232	20857431	46	35511											
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149152518	149152518	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	149152518	A	T	149152518	3	4	607	1	0	0	0	0	1	0	0	0	18162	188	7	5	1919	5	ZNF777	7	149152518	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	10871286	149152518	9986145	47	35512											
VIPR2	7434	broad.mit.edu;bcgsc.ca	37	7	158902583	158902587	+	Frame_Shift_Del	DEL	GTGAT	GTGAT	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	GTGAT	GTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	158902587	GTGAT	-	158902583	7	5	607	1	0	1	0	1	0	0	0	0	17182	1145	40	0	1181	0	VIPR2	7	158902583	Frame_Shift_Del	DEL	GTGAT	TCGA-DW-7838-01A-11D-2136-08	9750065	158902583	236080	48	35513											
USP17L2	377630	hgsc.bcm.edu	37	8	11996075	11996075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	11996075	C	G	11996075	3	3	607	1	0	0	0	0	1	0	0	0	17060	854	30	4	1401	4	USP17L2	8	11996075	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		11996075	134367947	49	35514											
TSNARE1	203062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143381927	143381927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	143381927	C	G	143381927	3	3	607	1	0	0	0	0	1	0	0	0	16642	864	30	4	347	4	TSNARE1	8	143381927	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	131385852	143381927	2982095	50	35515											
TSTD2	158427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100368460	100368460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	100368460	G	T	100368460	3	4	607	1	0	0	0	0	1	0	0	0	16687	1000	35	4	647	4	TSTD2	9	100368460	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		100368460	40844971	51	35516											
FKBP15	23307	hgsc.bcm.edu	37	9	115973833	115973833	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	115973833	A	G	115973833	2	3	607	1	0	0	0	0	0	0	0	1	5912	175	7	3		3	FKBP15	9	115973833	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	15605373	115973833	25239598	52	35517											
SLC31A1	1317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	116018468	116018469	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	116018469	-	C	116018468	7	5	607	1	0	1	1	0	0	0	0	0	14576	1551	54	0	42	0	SLC31A1	9	116018468	Frame_Shift_Ins	INS	-	TCGA-DW-7838-01A-11D-2136-08	44635	116018468	25194963	53	35518											
OR1N2	138882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	125316283	125316283	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	125316283	C	-	125316283	7	5	607	1	0	1	0	1	0	0	0	0	10977	855	30	0	837	0	OR1N2	9	125316283	Frame_Shift_Del	DEL	C	TCGA-DW-7838-01A-11D-2136-08	9297815	125316283	15897148	54	35519											
HSPA5	3309	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	128001454	128001454	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	128001454	A	G	128001454	2	3	607	1	0	0	0	0	0	0	0	1	7421	146	6	3		3	HSPA5	9	128001454	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	2685171	128001454	13211977	55	35520											
GARNL3	84253	hgsc.bcm.edu	37	9	130149608	130149608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	130149608	A	G	130149608	3	3	607	1	0	0	0	0	1	0	0	0	6248	246	9	3	2623	3	GARNL3	9	130149608	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	2148154	130149608	11063823	56	35521											
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131476565	131476565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	131476565	C	A	131476565	3	1	607	1	0	0	0	0	1	0	0	0	11988	623	22	4	1444	4	PKN3	9	131476565	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	1326957	131476565	9736866	57	35522											
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131512978	131512978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	131512978	A	G	131512978	3	3	607	1	0	0	0	0	1	0	0	0	17637	391	14	3	1060	3	ZER1	9	131512978	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	36413	131512978	9700453	58	35523											
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5139633	5139633	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	5139633	C	G	5139633	3	3	607	1	0	0	0	0	1	0	0	0	471	855	30	4	270	4	AKR1C3	10	5139633	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		5139633	130395114	59	35524											
IL15RA	3601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	6008174	6008174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	6008174	T	C	6008174	3	2	607	1	0	0	0	0	1	0	0	0	7639	1667	58	3	610	3	IL15RA	10	6008174	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	868541	6008174	129526573	60	35525											
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	43315737	G	T	43315737	3	4	607	1	0	0	0	0	1	0	0	0	1472	991	35	4	2692	4	BMS1	10	43315737	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	37307563	43315737	92219010	61	35526											
TYSND1	219743	hgsc.bcm.edu	37	10	71906010	71906010	+	Silent	SNP	C	C	G	rs11549688		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	71906010	C	G	71906010	2	3	607	1	0	0	0	0	0	0	0	1	16829	871	31	4		4	TYSND1	10	71906010	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	28590273	71906010	63628737	62	35527											
VDAC2	7417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	76980587	76980587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	76980587	C	T	76980587	3	4	607	1	0	0	0	0	1	0	0	0	17159	710	25	2	545	2	VDAC2	10	76980587	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	5074577	76980587	58554160	63	35528											
MMRN2	79812	broad.mit.edu;bcgsc.ca	37	10	88705024	88705026	+	Frame_Shift_Del	DEL	ATC	ATC	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	88705026	ATC	-	88705024	7	5	607	1	0	1	0	1	0	0	0	0	9678	115	4	0	2463	0	MMRN2	10	88705024	Frame_Shift_Del	DEL	ATC	TCGA-DW-7838-01A-11D-2136-08	11724437	88705024	46829723	64	35529											
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	93773747	93773747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	93773747	A	T	93773747	3	4	607	1	0	0	0	0	1	0	0	0	1538	11	1	5	4671	5	BTAF1	10	93773747	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	5068723	93773747	41761000	65	35530											
MMS19	64210	broad.mit.edu	37	10	99222420	99222420	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	99222420	C	T	99222420	2	4	607	1	0	0	0	0	0	0	0	1	9679	813	29	2		2	MMS19	10	99222420	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	5448673	99222420	36312327	66	35531											
PSD	5662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104176443	104176443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	104176443	G	C	104176443	3	2	607	1	0	0	0	0	1	0	0	0	12656	1000	35	4	2785	4	PSD	10	104176443	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	4954023	104176443	31358304	67	35532											
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1459605	1459605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	1459605	G	A	1459605	3	1	607	1	0	0	0	0	1	0	0	0	1526	1291	45	2	266	2	BRSK2	11	1459605	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		1459605	133546911	68	35533											
FBXO3	26273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33770334	33770334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	33770334	G	T	33770334	3	4	607	1	0	0	0	0	1	0	0	0	5746	1000	35	4	399	4	FBXO3	11	33770334	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	32310729	33770334	101236182	69	35534											
ACY3	91703	hgsc.bcm.edu;broad.mit.edu	37	11	67412339	67412339	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	67412339	A	G	67412339	2	3	607	1	0	0	0	0	0	0	0	1	227	405	14	3		3	ACY3	11	67412339	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	33642005	67412339	67594177	70	35535											
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6968684	6968684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	6968684	C	T	6968684	3	4	607	1	0	0	0	0	1	0	0	0	17093	507	18	2	1143	2	USP5	12	6968684	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		6968684	126883211	71	35536											
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14613823	14613823	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	14613823	C	T	14613823	2	4	607	1	0	0	0	0	0	0	0	1	1087	581	21	2		2	ATF7IP	12	14613823	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	7645139	14613823	119238072	72	35537											
EIF4B	1975	hgsc.bcm.edu;broad.mit.edu	37	12	53431279	53431279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	53431279	C	T	53431279	3	4	607	1	0	0	0	0	1	0	0	0	5029	855	30	2	1435	2	EIF4B	12	53431279	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	38817456	53431279	80420616	73	35538											
IRS2	8660	hgsc.bcm.edu	37	13	110435756	110435756	+	Missense_Mutation	SNP	C	C	G	rs201499247		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	110435756	C	G	110435756	3	3	607	1	0	0	0	0	1	0	0	0	7848	739	26	4	1379	4	IRS2	13	110435756	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		110435756	4734122	74	35539											
CGRRF1	10668	ucsc.edu	37	14	55005042	55005042	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	55005042	G	C	55005042	3	2	607	1	0	0	0	0	1	0	0	0	3308	1175	41	4	962	4	CGRRF1	14	55005042	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		55005042	52344498	75	35540											
GPR135	64582	hgsc.bcm.edu	37	14	59931931	59931931	+	Missense_Mutation	SNP	T	T	G	rs1752428		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	59931931	T	G	59931931	3	3	607	1	0	0	0	0	1	0	0	0	6651	1580	55	5	1474	5	GPR135	14	59931931	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	4926889	59931931	47417609	76	35541											
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64633998	64633998	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	64633998	G	A	64633998	2	1	607	1	0	0	0	0	0	0	0	1	15458	1281	45	2		2	SYNE2	14	64633998	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	4702067	64633998	42715542	77	35542											
TRIP11	9321	ucsc.edu;bcgsc.ca	37	14	92480875	92480875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	92480875	C	T	92480875	3	4	607	1	0	0	0	0	1	0	0	0	16567	710	25	2	5129	2	TRIP11	14	92480875	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	27846877	92480875	14868665	78	35543											
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95670344	95670344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	95670344	C	T	95670344	3	4	607	1	0	0	0	0	1	0	0	0	3544	681	24	2	1686	2	CLMN	14	95670344	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	3189469	95670344	11679196	79	35544											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42149779	42149779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	42149779	C	G	42149779	3	3	607	1	0	0	0	0	1	0	0	0	15134	739	26	4	2744	4	SPTBN5	15	42149779	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		42149779	60381613	80	35545											
SPG11	80208	hgsc.bcm.edu	37	15	44861660	44861660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	44861660	T	C	44861660	3	2	607	1	0	0	0	0	1	0	0	0	15053	1638	57	3	834	3	SPG11	15	44861660	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	2711881	44861660	57669732	81	35546											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	2059674	T	C	2059674	3	2	607	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08		2059674	88295079	82	35547											
C16orf92	146378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30035201	30035219	+	In_Frame_Del	DEL	ACTCAGGTATGAACCAGCT	ACTCAGGTATGAACCAGCT	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	ACTCAGGTATGAACCAGCT	ACTCAGGTATGAACCAGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	30035219	ACTCAGGTATGAACCAGCT	-	30035201	7	5	607	1	0	1	0	1	0	0	0	0	1847	43	2	0	304	0	C16orf92	16	30035201	In_Frame_Del	DEL	ACTCAGGTATGAACCAGCT	TCGA-DW-7838-01A-11D-2136-08	27975527	30035201	60319552	83	35548											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	51172851	51172851	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	51172851	A	G	51172851	2	3	607	1	0	0	0	0	0	0	0	1	13823	214	8	3		3	SALL1	16	51172851	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	21137650	51172851	39181902	84	35549											
SLC38A7	55238	hgsc.bcm.edu;broad.mit.edu	37	16	58713827	58713827	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	58713827	C	T	58713827	2	4	607	1	0	0	0	0	0	0	0	1	14622	494	18	2		2	SLC38A7	16	58713827	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	7540976	58713827	31640926	85	35550											
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67577079	67577079	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	67577079	T	A	67577079	3	1	607	1	0	0	0	0	1	0	0	0	5606	1522	53	5	2436	5	FAM65A	16	67577079	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	8863252	67577079	22777674	86	35551											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3919676	3919676	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	3919676	C	A	3919676	4	1	607	1	0	0	0	0	0	1	0	0	18267	690	24	4	827	4	ZZEF1	17	3919676	Nonsense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		3919676	77275534	87	35552											
ZFP3	124961	hgsc.bcm.edu	37	17	4995909	4995909	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	4995909	T	C	4995909	2	2	607	1	0	0	0	0	0	0	0	1	17655	1702	59	3		3	ZFP3	17	4995909	Silent	SNP	T	TCGA-DW-7838-01A-11D-2136-08	1076233	4995909	76199301	88	35553											
SOX15	6665	hgsc.bcm.edu	37	17	7492829	7492829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	7492829	A	G	7492829	3	3	607	1	0	0	0	0	1	0	0	0	14959	43	2	3	543	3	SOX15	17	7492829	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	2496920	7492829	73702381	89	35554											
WIPF2	147179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	38420795	38420800	+	In_Frame_Del	DEL	CCAAGG	CCAAGG	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	CCAAGG	CCAAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	38420800	CCAAGG	-	38420795	7	5	607	1	0	1	0	1	0	0	0	0	17380	623	22	0	381	0	WIPF2	17	38420795	In_Frame_Del	DEL	CCAAGG	TCGA-DW-7838-01A-11D-2136-08	30927966	38420795	42774415	90	35555			1	71		2	2	12	N	CCAAGG_A	4.263928e-05
WIPF2	147179	hgsc.bcm.edu;bcgsc.ca	37	17	38420806	38420806	+	Silent	SNP	A	A	G	rs139121244		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	38420806	A	G	38420806	2	3	607	1	0	0	0	0	0	0	0	1	17380	175	7	3		3	WIPF2	17	38420806	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	11	38420806	42774404	91	35556			1	71		2	2	12	N	CCAAGG_A	4.263928e-05
KRT37	8688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39577782	39577782	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	39577782	C	G	39577782	3	3	607	1	0	0	0	0	1	0	0	0	8481	739	26	4	279	4	KRT37	17	39577782	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	1156976	39577782	41617428	92	35557											
SCRN2	90507	broad.mit.edu	37	17	45916884	45916884	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	45916884	A	-	45916884	7	5	607	1	0	1	0	1	0	0	0	0	13952	246	9	0	833	0	SCRN2	17	45916884	Frame_Shift_Del	DEL	A	TCGA-DW-7838-01A-11D-2136-08	6339102	45916884	35278326	93	35558											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60023946	60023946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	60023946	C	G	60023946	3	3	607	1	0	0	0	0	1	0	0	0	9437	564	20	4	120	4	MED13	17	60023946	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	14107062	60023946	21171264	94	35559											
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74163165	74163165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	74163165	C	A	74163165	3	1	607	1	0	0	0	0	1	0	0	0	13467	564	20	4	1613	4	RNF157	17	74163165	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	14139219	74163165	7032045	95	35560											
BIRC5	332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76212806	76212806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	76212806	G	A	76212806	3	1	607	1	0	0	0	0	1	0	0	0	1437	943	33	2	366	2	BIRC5	17	76212806	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	2049641	76212806	4982404	96	35561											
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10471914	10471914	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	10471914	G	A	10471914	2	1	607	1	0	0	0	0	0	0	0	1	765	962	34	2		2	APCDD1	18	10471914	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08		10471914	67605334	97	35562											
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13071144	13071144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	13071144	G	T	13071144	3	4	607	1	0	0	0	0	1	0	0	0	3253	942	33	4	5387	4	CEP192	18	13071144	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	2599230	13071144	65006104	98	35563											
ZNF519	162655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	14105675	14105675	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	14105675	T	C	14105675	2	2	607	1	0	0	0	0	0	0	0	1	17976	1538	54	3		3	ZNF519	18	14105675	Silent	SNP	T	TCGA-DW-7838-01A-11D-2136-08	1034531	14105675	63971573	99	35564											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21451430	21451430	+	Silent	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	21451430	G	T	21451430	2	4	607	1	0	0	0	0	0	0	0	1	8614	1364	48	4		4	LAMA3	18	21451430	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	7345755	21451430	56625818	100	35565											
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	22805629	22805629	+	Silent	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	22805629	G	C	22805629	2	2	607	1	0	0	0	0	0	0	0	1	17977	929	33	4		4	ZNF521	18	22805629	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	1354199	22805629	55271619	101	35566											
KIAA1328	57536	broad.mit.edu	37	18	34802114	34802114	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	34802114	G	C	34802114	3	2	607	1	0	0	0	0	1	0	0	0	8232	1116	39	4	1696	4	KIAA1328	18	34802114	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	11996485	34802114	43275134	102	35567											
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21240780	21240780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	21240780	C	G	21240780	3	3	607	1	0	0	0	0	1	0	0	0	17916	681	24	4	1684	4	ZNF430	19	21240780	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		21240780	37888203	103	35568											
DPY19L3	147991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	32930113	32930113	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	32930113	T	G	32930113	3	3	607	1	0	0	0	0	1	0	0	0	4744	1580	55	5	714	5	DPY19L3	19	32930113	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	11689333	32930113	26198870	104	35569											
SERTAD1	29950	hgsc.bcm.edu;ucsc.edu	37	19	40928862	40928862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	40928862	G	A	40928862	3	1	607	1	0	0	0	0	1	0	0	0	14133	1232	43	2	122	2	SERTAD1	19	40928862	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	7998749	40928862	18200121	105	35570											
CD177	57126	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43858482	43858482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	43858482	A	G	43858482	3	3	607	1	0	0	0	0	1	0	0	0	2973	188	7	3	327	3	CD177	19	43858482	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	2929620	43858482	15270501	106	35571											
ZNF227	7770	broad.mit.edu;bcgsc.ca	37	19	44739499	44739499	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	-	44739499	T	-	44739499	7	5	607	1	0	1	0	1	0	0	0	0	17793	1609	56	0	930	0	ZNF227	19	44739499	Frame_Shift_Del	DEL	T	TCGA-DW-7838-01A-11D-2136-08	881017	44739499	14389484	107	35572											
FUT2	2524	hgsc.bcm.edu;broad.mit.edu	37	19	49206557	49206557	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	49206557	A	C	49206557	3	2	607	1	0	0	0	0	1	0	0	0	6111	159	6	5	346	5	FUT2	19	49206557	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	4467058	49206557	9922426	108	35573											
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50550199	50550199	+	Silent	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	50550199	G	T	50550199	2	4	607	1	0	0	0	0	0	0	0	1	17943	1277	45	4		4	ZNF473	19	50550199	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	1343642	50550199	8578784	109	35574											
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52004707	52004707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	52004707	T	A	52004707	3	1	607	1	0	0	0	0	1	0	0	0	14321	1696	59	5	1611	5	SIGLEC12	19	52004707	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	1454508	52004707	7124276	110	35575											
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53303801	53303801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	53303801	G	C	53303801	3	2	607	1	0	0	0	0	1	0	0	0	17825	1290	45	4	863	4	ZNF28	19	53303801	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	1299094	53303801	5825182	111	35576											
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53958007	53958007	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	53958007	T	G	53958007	3	3	607	1	0	0	0	0	1	0	0	0	18148	1461	51	5	257	5	ZNF761	19	53958007	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	654206	53958007	5170976	112	35577											
FCAR	2204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55401195	55401196	+	Missense_Mutation	DNP	TG	TG	GT	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	GT	55401196	TG	GT	55401195	3	3	607	1	0	0	0	0	1	0	0	0	5780	1821	63	5	919	5	FCAR	19	55401195	Missense_Mutation	DNP	TG	TCGA-DW-7838-01A-11D-2136-08	1443188	55401195	3727788	113	35578											
WFDC12	128488	broad.mit.edu;bcgsc.ca	37	20	43752864	43752864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	T	43752864	C	T	43752864	3	4	607	1	0	0	0	0	1	0	0	0	17362	710	25	2	221	2	WFDC12	20	43752864	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		43752864	19272656	114	35579											
LAMA5	3911	hgsc.bcm.edu	37	20	60887506	60887506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	60887506	T	G	60887506	3	3	607	1	0	0	0	0	1	0	0	0	8616	1821	63	5	1829	5	LAMA5	20	60887506	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	17134642	60887506	2138014	115	35580											
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu	37	20	62374341	62374341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	62374341	T	C	62374341	3	2	607	1	0	0	0	0	1	0	0	0	14560	1535	53	3	1192	3	SLC2A4RG	20	62374341	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	1486835	62374341	651179	116	35581											
POLA1	5422	hgsc.bcm.edu	37	X	24906193	24906193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	G	24906193	C	G	24906193	3	3	607	1	0	0	0	0	1	0	0	0	12194	565	20	4	4238	4	POLA1	23	24906193	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		24906193	130364367	117	35582											
DDX3X	1654	hgsc.bcm.edu	37	X	41200810	41200810	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	C	41200810	T	C	41200810	2	2	607	1	0	0	0	0	0	0	0	1	4360	1625	57	3		3	DDX3X	23	41200810	Silent	SNP	T	TCGA-DW-7838-01A-11D-2136-08	16294617	41200810	114069750	118	35583											
ZXDB	158586	hgsc.bcm.edu;broad.mit.edu	37	X	57619097	57619097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	57619097	G	A	57619097	3	1	607	1	0	0	0	0	1	0	0	0	18263	1116	39	1	618	1	ZXDB	23	57619097	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	16418287	57619097	97651463	119	35584											
KIF4A	24137	broad.mit.edu	37	X	69595071	69595071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	69595071	G	A	69595071	3	1	607	1	0	0	0	0	1	0	0	0	8310	1087	38	1	1858	1	KIF4A	23	69595071	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	11975974	69595071	85675489	120	35585											
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	110366494	110366494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	A	110366494	G	A	110366494	3	1	607	1	0	0	0	0	1	0	0	0	11409	1001	35	2	165	2	PAK3	23	110366494	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	40771423	110366494	44904066	121	35586											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	103400626	103400626	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	-	103400626	G	-	103400626	7	5	608	1	0	1	0	1	0	0	0	0	3669	1000	35	0	2030	0	COL11A1	1	103400626	Frame_Shift_Del	DEL	G	TCGA-DW-7839-01A-11D-2136-08		103400626	145849995	1	35587											
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207818592	207818592	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	207818592	T	G	207818592	3	3	608	1	0	0	0	0	1	0	0	0	3843	1667	58	5	16	5	CR1L	1	207818592	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	104417966	207818592	41432029	2	35588											
ATF3	467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212791490	212791490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	212791490	A	G	212791490	3	3	608	1	0	0	0	0	1	0	0	0	1081	63	3	3	268	3	ATF3	1	212791490	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	4972898	212791490	36459131	3	35589											
C1orf35	79169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228290925	228290925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	228290925	A	C	228290925	3	2	608	1	0	0	0	0	1	0	0	0	2040	43	2	5	819	5	C1orf35	1	228290925	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	15499435	228290925	20959696	4	35590											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73827935	73827935	+	Silent	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	73827935	T	C	73827935	2	2	608	1	0	0	0	0	0	0	0	1	535	1683	59	3		3	ALMS1	2	73827935	Silent	SNP	T	TCGA-DW-7839-01A-11D-2136-08		73827935	169371438	5	35591											
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	214161997	214161997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	214161997	C	G	214161997	3	3	608	1	0	0	0	0	1	0	0	0	14991	477	17	4	205	4	SPAG16	2	214161997	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	140334062	214161997	29037376	6	35592											
PDZRN3	23024	hgsc.bcm.edu	37	3	73673578	73673578	+	Silent	SNP	G	G	C	rs6763344		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	73673578	G	C	73673578	2	2	608	1	0	0	0	0	0	0	0	1	11716	987	35	4		4	PDZRN3	3	73673578	Silent	SNP	G	TCGA-DW-7839-01A-11D-2136-08		73673578	124348852	7	35593											
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142141567	142141567	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	142141567	A	T	142141567	3	4	608	1	0	0	0	0	1	0	0	0	17471	101	4	5	4436	5	XRN1	3	142141567	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	68467989	142141567	55880863	8	35594											
ATP11B	23200	bcgsc.ca	37	3	182597406	182597429	+	In_Frame_Del	DEL	GCTGTCGTATGGCTCCACTGCAGA	GCTGTCGTATGGCTCCACTGCAGA	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	GCTGTCGTATGGCTCCACTGCAGA	GCTGTCGTATGGCTCCACTGCAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	-	182597429	GCTGTCGTATGGCTCCACTGCAGA	-	182597406	7	5	608	1	0	1	0	1	0	0	0	0	1120	1319	46	0	2453	0	ATP11B	3	182597406	In_Frame_Del	DEL	GCTGTCGTATGGCTCCACTGCAGA	TCGA-DW-7839-01A-11D-2136-08	40455839	182597406	15425024	9	35595											
SLBP	7884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1701385	1701385	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	1701385	C	G	1701385	3	3	608	1	0	0	0	0	1	0	0	0	14385	835	29	4	443	4	SLBP	4	1701385	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		1701385	189452891	10	35596											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153078528	153078528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	153078528	C	G	153078528	3	3	608	1	0	0	0	0	1	0	0	0	6774	535	19	4	1385	4	GRIA1	5	153078528	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		153078528	27836732	11	35597											
PTK7	5754	hgsc.bcm.edu;bcgsc.ca	37	6	43044271	43044271	+	Silent	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	43044271	T	G	43044271	2	3	608	1	0	0	0	0	0	0	0	1	12776	1538	54	5		5	PTK7	6	43044271	Silent	SNP	T	TCGA-DW-7839-01A-11D-2136-08		43044271	128070796	12	35598											
SP8	221833	hgsc.bcm.edu	37	7	20824953	20824953	+	Silent	SNP	G	G	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	20824953	G	C	20824953	2	2	608	1	0	0	0	0	0	0	0	1	14983	1074	38	4		4	SP8	7	20824953	Silent	SNP	G	TCGA-DW-7839-01A-11D-2136-08		20824953	138313710	13	35599	464	2									
SP8	221833	hgsc.bcm.edu	37	7	20824956	20824956	+	Silent	SNP	C	C	G	rs201180283		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	20824956	C	G	20824956	2	3	608	1	0	0	0	0	0	0	0	1	14983	610	22	4		4	SP8	7	20824956	Silent	SNP	C	TCGA-DW-7839-01A-11D-2136-08	3	20824956	138313707	14	35600	464	2									
HNRNPA2B1	3181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26235509	26235509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	26235509	C	T	26235509	3	4	608	1	0	0	0	0	1	0	0	0	7266	603	21	2	362	2	HNRNPA2B1	7	26235509	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	5410553	26235509	132903154	15	35601											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	92734994	92734994	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	-	92734994	T	-	92734994	7	5	608	1	0	1	0	1	0	0	0	0	13839	1606	56	0	4356	0	SAMD9	7	92734994	Frame_Shift_Del	DEL	T	TCGA-DW-7839-01A-11D-2136-08	66499485	92734994	66403669	16	35602											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141731533	141731533	+	Silent	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	141731533	T	G	141731533	2	3	608	1	0	0	0	0	0	0	0	1	9548	1828	64	5		5	MGAM	7	141731533	Silent	SNP	T	TCGA-DW-7839-01A-11D-2136-08	48996539	141731533	17407130	17	35603											
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143175477	143175477	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	143175477	A	T	143175477	3	4	608	1	0	0	0	0	1	0	0	0	15591	72	3	5	514	5	TAS2R41	7	143175477	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	1443944	143175477	15963186	18	35604											
LRRC14	9684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145746824	145746825	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	-	145746825	AT	-	145746824	7	5	608	1	0	1	0	1	0	0	0	0	8975	217	8	0	1454	0	LRRC14	8	145746824	Frame_Shift_Del	DEL	AT	TCGA-DW-7839-01A-11D-2136-08		145746824	617198	19	35605											
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19316719	19316719	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	19316719	A	T	19316719	3	4	608	1	0	0	0	0	1	0	0	0	4437	69	3	5	1011	5	DENND4C	9	19316719	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08		19316719	121896712	20	35606											
DENND1A	57706	hgsc.bcm.edu;bcgsc.ca	37	9	126214605	126214605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	126214605	T	C	126214605	3	2	608	1	0	0	0	0	1	0	0	0	4428	1783	62	3	1911	3	DENND1A	9	126214605	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	106897886	126214605	14998826	21	35607											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16943441	16943441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	16943441	T	C	16943441	3	2	608	1	0	0	0	0	1	0	0	0	4053	1435	50	3	2855	3	CUBN	10	16943441	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08		16943441	118591306	22	35608											
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	83635770	83635770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	A	83635770	C	A	83635770	3	1	608	1	0	0	0	0	1	0	0	0	10656	681	24	4	676	4	NRG3	10	83635770	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	66692329	83635770	51898977	23	35609											
LIPJ	142910	bcgsc.ca	37	10	90362367	90362367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	A	90362367	C	A	90362367	3	1	608	1	0	0	0	0	1	0	0	0	8833	710	25	4	784	4	LIPJ	10	90362367	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	6726597	90362367	45172380	24	35610											
EPS8L2	64787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	723296	723296	+	Nonsense_Mutation	SNP	C	C	A	rs142895363	alternate_allele	TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	A	723296	C	A	723296	4	1	608	1	0	0	0	0	0	1	0	0	5198	838	29	4	1451	4	EPS8L2	11	723296	Nonsense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		723296	134283220	25	35611											
SCUBE2	57758	hgsc.bcm.edu	37	11	9113002	9113002	+	Missense_Mutation	SNP	A	A	G	rs60494098		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	9113002	A	G	9113002	3	3	608	1	0	0	0	0	1	0	0	0	13958	188	7	3	3104	3	SCUBE2	11	9113002	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	8389706	9113002	125893514	26	35612											
B3GNT1	11041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66114291	66114291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	A	66114291	T	A	66114291	3	1	608	1	0	0	0	0	1	0	0	0	1256	1838	64	5	529	5	B3GNT1	11	66114291	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	57001289	66114291	68892225	27	35613											
PICALM	8301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	85722090	85722090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	85722090	A	G	85722090	3	3	608	1	0	0	0	0	1	0	0	0	11887	43	2	3	1294	3	PICALM	11	85722090	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	19607799	85722090	49284426	28	35614											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92590392	92590392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	92590392	C	T	92590392	3	4	608	1	0	0	0	0	1	0	0	0	5698	652	23	1	11452	1	FAT3	11	92590392	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	6868302	92590392	42416124	29	35615											
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27787953	27787953	+	Silent	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	27787953	T	C	27787953	2	2	608	1	0	0	0	0	0	0	0	1	12320	1722	60	3		3	PPFIBP1	12	27787953	Silent	SNP	T	TCGA-DW-7839-01A-11D-2136-08		27787953	106063942	30	35616											
ARF3	377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49333834	49333834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	49333834	C	G	49333834	3	3	608	1	0	0	0	0	1	0	0	0	845	623	22	4	352	4	ARF3	12	49333834	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	21545881	49333834	84518061	31	35617											
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57920964	57920964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	57920964	C	T	57920964	3	4	608	1	0	0	0	0	1	0	0	0	9355	768	27	1	2054	1	MBD6	12	57920964	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	8587130	57920964	75930931	32	35618											
HCFC2	29915	bcgsc.ca	37	12	104473281	104473281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	104473281	A	G	104473281	3	3	608	1	0	0	0	0	1	0	0	0	7000	304	11	3	546	3	HCFC2	12	104473281	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	46552317	104473281	29378614	33	35619											
BTBD11	121551	bcgsc.ca	37	12	108011117	108011117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	108011117	C	T	108011117	3	4	608	1	0	0	0	0	1	0	0	0	1541	739	26	2	2274	2	BTBD11	12	108011117	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	3537836	108011117	25840778	34	35620											
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	116429670	116429670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	116429670	G	C	116429670	3	2	608	1	0	0	0	0	1	0	0	0	9438	1203	42	4	3603	4	MED13L	12	116429670	Missense_Mutation	SNP	G	TCGA-DW-7839-01A-11D-2136-08	8418553	116429670	17422225	35	35621											
ZMYM2	7750	hgsc.bcm.edu	37	13	20601376	20601376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	20601376	A	G	20601376	3	3	608	1	0	0	0	0	1	0	0	0	17712	43	2	3	1795	3	ZMYM2	13	20601376	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08		20601376	94568502	36	35622											
STARD13	90627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	33700266	33700266	+	Missense_Mutation	SNP	T	T	G	rs143789881	byfrequency;alternate_allele	TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	33700266	T	G	33700266	3	3	608	1	0	0	0	0	1	0	0	0	15268	1838	64	5	1339	5	STARD13	13	33700266	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	13098890	33700266	81469612	37	35623											
SLC38A6	145389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61449295	61449295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	61449295	A	C	61449295	3	2	608	1	0	0	0	0	1	0	0	0	14621	217	8	5	181	5	SLC38A6	14	61449295	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08		61449295	45900245	38	35624											
TJP1	7082	bcgsc.ca	37	15	30033565	30033565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	A	30033565	G	A	30033565	3	1	608	1	0	0	0	0	1	0	0	0	15941	1000	35	2	4096	2	TJP1	15	30033565	Missense_Mutation	SNP	G	TCGA-DW-7839-01A-11D-2136-08		30033565	72497827	39	35625											
HOMER2	9455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	83518619	83518620	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	83518620	-	T	83518619	7	5	608	1	0	1	1	0	0	0	0	0	7286	565	20	0	155	0	HOMER2	15	83518619	Frame_Shift_Ins	INS	-	TCGA-DW-7839-01A-11D-2136-08	53485054	83518619	19012773	40	35626											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	24802526	24802526	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	-	24802526	G	-	24802526	7	5	608	1	0	1	0	1	0	0	0	0	16352	1290	45	0	2585	0	TNRC6A	16	24802526	Frame_Shift_Del	DEL	G	TCGA-DW-7839-01A-11D-2136-08		24802526	65552227	41	35627											
WWP2	11060	bcgsc.ca	37	16	69971116	69971116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	A	69971116	G	A	69971116	3	1	608	1	0	0	0	0	1	0	0	0	17428	1087	38	1	2291	1	WWP2	16	69971116	Missense_Mutation	SNP	G	TCGA-DW-7839-01A-11D-2136-08	45168590	69971116	20383637	42	35628											
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84228944	84228944	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	A	84228944	T	A	84228944	3	1	608	1	0	0	0	0	1	0	0	0	232	1580	55	5	1044	5	ADAD2	16	84228944	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	14257828	84228944	6125809	43	35629											
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17721579	17721579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	17721579	T	C	17721579	3	2	608	1	0	0	0	0	1	0	0	0	15153	1841	64	3	2321	3	SREBF1	17	17721579	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08		17721579	63473631	44	35630											
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37880219	37880220	+	Missense_Mutation	DNP	TT	TT	CC	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	CC	37880220	TT	CC	37880219	3	2	608	1	0	0	0	0	1	0	0	0	5208	1722	60	3	2337	3	ERBB2	17	37880219	Missense_Mutation	DNP	TT	TCGA-DW-7839-01A-11D-2136-08	20158640	37880219	43314991	45	35631											
CYP2A6	1548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	41352945	41352945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	41352945	C	T	41352945	3	4	608	1	0	0	0	0	1	0	0	0	4164	478	17	2	838	2	CYP2A6	19	41352945	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		41352945	17776038	46	35632											
CYP2A7	1549	hgsc.bcm.edu;broad.mit.edu	37	19	41384830	41384830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	41384830	C	T	41384830	3	4	608	1	0	0	0	0	1	0	0	0	4165	478	17	2	838	2	CYP2A7	19	41384830	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	31885	41384830	17744153	47	35633											
DMPK	1760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46281110	46281110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	46281110	C	T	46281110	3	4	608	1	0	0	0	0	1	0	0	0	4586	623	22	2	1235	2	DMPK	19	46281110	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	4896280	46281110	12847873	48	35634											
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55494859	55494859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	55494859	C	T	55494859	3	4	608	1	0	0	0	0	1	0	0	0	10484	536	19	1	1811	1	NLRP2	19	55494859	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	9213749	55494859	3634124	49	35635											
SNX5	27131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	17933351	17933351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	G	17933351	C	G	17933351	3	3	608	1	0	0	0	0	1	0	0	0	14918	564	20	4	857	4	SNX5	20	17933351	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		17933351	45092169	50	35636											
WFDC10A	140832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44258534	44258534	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	-	44258534	A	-	44258534	7	5	608	1	0	1	0	1	0	0	0	0	17359	295	11	0	84	0	WFDC10A	20	44258534	Frame_Shift_Del	DEL	A	TCGA-DW-7839-01A-11D-2136-08	26325183	44258534	18766986	51	35637											
NUDT10	170685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	51075840	51075840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	T	51075840	C	T	51075840	3	4	608	1	0	0	0	0	1	0	0	0	10733	478	17	2	25	2	NUDT10	23	51075840	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		51075840	104194720	52	35638											
NUDT11	55190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	51239274	51239274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	A	51239274	G	A	51239274	3	1	608	1	0	0	0	0	1	0	0	0	10734	1145	40	1	479	1	NUDT11	23	51239274	Missense_Mutation	SNP	G	TCGA-DW-7839-01A-11D-2136-08	163434	51239274	104031286	53	35639											
RGAG4	340526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	71351213	71351213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	C	71351213	T	C	71351213	3	2	608	1	0	0	0	0	1	0	0	0	13288	1464	51	3	1535	3	RGAG4	23	71351213	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	20111939	71351213	83919347	54	35640											
KIAA1751	85452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1887063	1887063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	1887063	C	T	1887063	3	4	609	1	0	0	0	0	1	0	0	0	8263	623	22	2	49	2	KIAA1751	1	1887063	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		1887063	247363558	1	35641											
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7721912	7721912	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	7721912	G	C	7721912	3	2	609	1	0	0	0	0	1	0	0	0	2615	1319	46	4	821	4	CAMTA1	1	7721912	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	5834849	7721912	241528709	2	35642											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8424145	8424145	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	8424145	T	A	8424145	3	1	609	1	0	0	0	0	1	0	0	0	13244	1522	53	5	3025	5	RERE	1	8424145	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	702233	8424145	240826476	3	35643											
ECE1	1889	hgsc.bcm.edu	37	1	21546592	21546592	+	Silent	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	21546592	G	C	21546592	2	2	609	1	0	0	0	0	0	0	0	1	4891	1219	43	4		4	ECE1	1	21546592	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	13122447	21546592	227704029	4	35644											
HMGCL	3155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24147039	24147039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	24147039	A	C	24147039	3	2	609	1	0	0	0	0	1	0	0	0	7236	126	5	5	904	5	HMGCL	1	24147039	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	2600447	24147039	225103582	5	35645											
C1orf63	57035	bcgsc.ca	37	1	25573160	25573160	+	Missense_Mutation	SNP	C	C	A	rs201238140	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	25573160	C	A	25573160	3	1	609	1	0	0	0	0	1	0	0	0	2055	652	23	4	593	4	C1orf63	1	25573160	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	1426121	25573160	223677461	6	35646											
PHACTR4	65979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	28785697	28785697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	28785697	T	C	28785697	3	2	609	1	0	0	0	0	1	0	0	0	11819	1609	56	3	174	3	PHACTR4	1	28785697	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	3212537	28785697	220464924	7	35647											
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31406096	31406096	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	31406096	A	T	31406096	3	4	609	1	0	0	0	0	1	0	0	0	12838	69	3	5	41	5	PUM1	1	31406096	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	2620399	31406096	217844525	8	35648											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62582269	62582269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	62582269	T	C	62582269	3	2	609	1	0	0	0	0	1	0	0	0	7738	1821	63	3	4859	3	INADL	1	62582269	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	31176173	62582269	186668352	9	35649											
FNBP1L	54874	broad.mit.edu	37	1	93996339	93996339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	93996339	C	T	93996339	3	4	609	1	0	0	0	0	1	0	0	0	5973	710	25	2	564	2	FNBP1L	1	93996339	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	31414070	93996339	155254282	10	35650											
RBM15	64783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110883658	110883658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	110883658	C	G	110883658	3	3	609	1	0	0	0	0	1	0	0	0	13129	565	20	4	1633	4	RBM15	1	110883658	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	16887319	110883658	138366963	11	35651											
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167870956	167870956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	167870956	T	A	167870956	3	1	609	1	0	0	0	0	1	0	0	0	293	1464	51	5	4568	5	ADCY10	1	167870956	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	56987298	167870956	81379665	12	35652											
IKBKE	9641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	206651658	206651658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	206651658	A	G	206651658	3	3	609	1	0	0	0	0	1	0	0	0	7619	159	6	3	994	3	IKBKE	1	206651658	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	38780702	206651658	42598963	13	35653											
SYT14	255928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210267875	210267875	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	210267875	T	C	210267875	2	2	609	1	0	0	0	0	0	0	0	1	15482	1722	60	3		3	SYT14	1	210267875	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	3616217	210267875	38982746	14	35654											
EPRS	2058	hgsc.bcm.edu	37	1	220180553	220180553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	220180553	T	G	220180553	3	3	609	1	0	0	0	0	1	0	0	0	5193	1841	64	5	2881	5	EPRS	1	220180553	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	9912678	220180553	29070068	15	35655											
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32422810	32422810	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	32422810	T	A	32422810	3	1	609	1	0	0	0	0	1	0	0	0	14572	1609	56	5	618	5	SLC30A6	2	32422810	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08		32422810	210776563	16	35656											
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55470636	55470636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	55470636	A	G	55470636	3	3	609	1	0	0	0	0	1	0	0	0	9941	43	2	3	723	3	MTIF2	2	55470636	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	23047826	55470636	187728737	17	35657											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61493234	61493234	+	Silent	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	61493234	C	T	61493234	2	4	609	1	0	0	0	0	0	0	0	1	17077	564	20	2		2	USP34	2	61493234	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	6022598	61493234	181706139	18	35658											
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	135891507	135891507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	135891507	A	G	135891507	3	3	609	1	0	0	0	0	1	0	0	0	12948	101	4	3	1461	3	RAB3GAP1	2	135891507	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	74398273	135891507	107307866	19	35659											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218713668	218713668	+	Silent	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	218713668	C	G	218713668	2	3	609	1	0	0	0	0	0	0	0	1	16355	755	27	4		4	TNS1	2	218713668	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	82822161	218713668	24485705	20	35660											
C3orf22	152065	ucsc.edu;bcgsc.ca	37	3	126268739	126268739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	126268739	G	A	126268739	3	1	609	1	0	0	0	0	1	0	0	0	2217	1087	38	1	31	1	C3orf22	3	126268739	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08		126268739	71753691	21	35661											
ABTB1	80325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127396051	127396051	+	Silent	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	127396051	C	A	127396051	2	1	609	1	0	0	0	0	0	0	0	1	102	874	31	4		4	ABTB1	3	127396051	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	1127312	127396051	70626379	22	35662											
LSG1	55341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194379786	194379786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	194379786	T	G	194379786	3	3	609	1	0	0	0	0	1	0	0	0	9056	1551	54	5	1349	5	LSG1	3	194379786	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	66983735	194379786	3642644	23	35663											
TFRC	7037	hgsc.bcm.edu;bcgsc.ca	37	3	195782165	195782166	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	AG	195782166	TC	AG	195782165	3	1	609	1	0	0	0	0	1	0	0	0	15824	1435	50	5	609	5	TFRC	3	195782165	Missense_Mutation	DNP	TC	TCGA-DW-7840-01A-11D-2136-08	1402379	195782165	2240265	24	35664											
CEP135	9662	hgsc.bcm.edu;bcgsc.ca	37	4	56874494	56874494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	56874494	A	G	56874494	3	3	609	1	0	0	0	0	1	0	0	0	3249	260	9	3	2348	3	CEP135	4	56874494	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08		56874494	134279782	25	35665											
RCHY1	25898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76415883	76415883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	76415883	A	C	76415883	3	2	609	1	0	0	0	0	1	0	0	0	13190	304	11	5	228	5	RCHY1	4	76415883	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	19541389	76415883	114738393	26	35666											
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79786783	79786783	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	79786783	T	C	79786783	2	2	609	1	0	0	0	0	0	0	0	1	1460	1509	53	3		3	BMP2K	4	79786783	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	3370900	79786783	111367493	27	35667											
DSPP	1834	hgsc.bcm.edu	37	4	88535323	88535324	+	In_Frame_Ins	INS	-	-	GGCAGTGACTCAAAAGGAGCAGAA	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	GGCAGTGACTCAAAAGGAGCAGAA	88535324	-	GGCAGTGACTCAAAAGGAGCAGAA	88535323	7	5	609	1	0	1	1	0	0	0	0	0	4784	1461	51	0	1523	0	DSPP	4	88535323	In_Frame_Ins	INS	-	TCGA-DW-7840-01A-11D-2136-08	8748540	88535323	102618953	28	35668											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104081805	104081805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	104081805	C	T	104081805	3	4	609	1	0	0	0	0	1	0	0	0	3232	835	29	2	5958	2	CENPE	4	104081805	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	15546482	104081805	87072471	29	35669											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	151821345	151821345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	151821345	G	T	151821345	3	4	609	1	0	0	0	0	1	0	0	0	8938	933	33	4	6991	4	LRBA	4	151821345	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	47739540	151821345	39332931	30	35670											
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	184182067	184182067	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	184182067	T	A	184182067	3	1	609	1	0	0	0	0	1	0	0	0	17424	1551	54	5	1333	5	WWC2	4	184182067	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	32360722	184182067	6972209	31	35671											
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5461992	5461992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	5461992	A	T	5461992	3	4	609	1	0	0	0	0	1	0	0	0	8209	275	10	5	2595	5	KIAA0947	5	5461992	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08		5461992	175453268	32	35672											
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	52211309	52211309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	52211309	G	T	52211309	3	4	609	1	0	0	0	0	1	0	0	0	7879	1348	47	4	1931	4	ITGA1	5	52211309	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	46749317	52211309	128703951	33	35673											
LHFPL2	10184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	77784725	77784725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	77784725	G	A	77784725	3	1	609	1	0	0	0	0	1	0	0	0	8772	1000	35	2	8	2	LHFPL2	5	77784725	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	25573416	77784725	103130535	34	35674											
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu	37	5	101735268	101735268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	101735268	G	A	101735268	3	1	609	1	0	0	0	0	1	0	0	0	14745	1203	42	2	370	2	SLCO6A1	5	101735268	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	23950543	101735268	79179992	35	35675											
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140605207	140605207	+	Silent	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	140605207	G	C	140605207	2	2	609	1	0	0	0	0	0	0	0	1	11546	1103	39	4		4	PCDHB14	5	140605207	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	38869939	140605207	40310053	36	35676											
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	157078648	157078648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	157078648	C	T	157078648	3	4	609	1	0	0	0	0	1	0	0	0	14965	855	30	2	1842	2	SOX30	5	157078648	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	16473441	157078648	23836612	37	35677											
NKX2-5	1482	hgsc.bcm.edu	37	5	172659920	172659920	+	Silent	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	172659920	C	G	172659920	2	3	609	1	0	0	0	0	0	0	0	1	10460	755	27	4		4	NKX2-5	5	172659920	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	15581272	172659920	8255340	38	35678											
NOTCH4	4855	hgsc.bcm.edu	37	6	32191691	32191691	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	32191691	T	C	32191691	2	2	609	1	0	0	0	0	0	0	0	1	10558	1683	59	3		3	NOTCH4	6	32191691	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08		32191691	138923376	39	35679											
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32945538	32945538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	32945538	T	C	32945538	3	2	609	1	0	0	0	0	1	0	0	0	1504	1638	57	3	1364	3	BRD2	6	32945538	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	753847	32945538	138169529	40	35680											
SLC22A7	10864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43267444	43267444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	43267444	T	C	43267444	3	2	609	1	0	0	0	0	1	0	0	0	14472	1522	53	3	593	3	SLC22A7	6	43267444	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	10321906	43267444	127847623	41	35681											
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	93969151	93969151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	93969151	C	A	93969151	3	1	609	1	0	0	0	0	1	0	0	0	5174	680	24	4	1183	4	EPHA7	6	93969151	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	50701707	93969151	77145916	42	35682											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	106967843	106967843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	-	106967843	T	-	106967843	7	5	609	1	0	1	0	1	0	0	0	0	430	1461	51	0	1542	0	AIM1	6	106967843	Frame_Shift_Del	DEL	T	TCGA-DW-7840-01A-11D-2136-08	12998692	106967843	64147224	43	35683											
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	107827597	107827597	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	-	107827597	T	-	107827597	7	5	609	1	0	1	0	1	0	0	0	0	14925	1596	56	0	397	0	SOBP	6	107827597	Frame_Shift_Del	DEL	T	TCGA-DW-7840-01A-11D-2136-08	859754	107827597	63287470	44	35684											
OSTM1	28962	hgsc.bcm.edu	37	6	108395713	108395713	+	Missense_Mutation	SNP	G	G	C	rs201176284		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	108395713	G	C	108395713	3	2	609	1	0	0	0	0	1	0	0	0	11305	1059	37	4	885	4	OSTM1	6	108395713	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	568116	108395713	62719354	45	35685											
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161470014	161470014	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	161470014	C	A	161470014	4	1	609	1	0	0	0	0	0	1	0	0	9259	838	29	4	720	4	MAP3K4	6	161470014	Nonsense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	53074301	161470014	9645053	46	35686											
HEATR2	54919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	803456	803456	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	803456	T	G	803456	3	3	609	1	0	0	0	0	1	0	0	0	7035	1464	51	5	1658	5	HEATR2	7	803456	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08		803456	158335207	47	35687											
TMEM184A	202915	hgsc.bcm.edu	37	7	1589783	1589783	+	Silent	SNP	G	G	A	rs139449337		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	1589783	G	A	1589783	2	1	609	1	0	0	0	0	0	0	0	1	16116	1048	37	1		1	TMEM184A	7	1589783	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	786327	1589783	157548880	48	35688											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47870900	47870900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	47870900	G	C	47870900	3	2	609	1	0	0	0	0	1	0	0	0	11971	1299	45	4	2225	4	PKD1L1	7	47870900	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	46281117	47870900	111267763	49	35689											
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	94057039	94057039	+	Missense_Mutation	SNP	G	G	T	rs145541630	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	94057039	G	T	94057039	3	4	609	1	0	0	0	0	1	0	0	0	3680	1087	38	4	3562	4	COL1A2	7	94057039	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	46186139	94057039	65081624	50	35690											
SRRT	51593	broad.mit.edu;bcgsc.ca	37	7	100485469	100485473	+	Frame_Shift_Del	DEL	GCCCC	GCCCC	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GCCCC	GCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	-	100485473	GCCCC	-	100485469	7	5	609	1	0	1	0	1	0	0	0	0	15184	1203	42	0	2377	0	SRRT	7	100485469	Frame_Shift_Del	DEL	GCCCC	TCGA-DW-7840-01A-11D-2136-08	6428430	100485469	58653194	51	35691											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu	37	7	111629106	111629106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	111629106	T	C	111629106	3	2	609	1	0	0	0	0	1	0	0	0	4691	1609	56	3	5660	3	DOCK4	7	111629106	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	11143637	111629106	47509557	52	35692											
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	124404923	124404923	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	124404923	G	C	124404923	3	2	609	1	0	0	0	0	1	0	0	0	6698	1136	40	4	1741	4	GPR37	7	124404923	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	12775817	124404923	34733740	53	35693											
MLL3	58508	hgsc.bcm.edu;bcgsc.ca	37	7	151962168	151962168	+	Missense_Mutation	SNP	C	C	G	rs78352960	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	151962168	C	G	151962168	3	3	609	1	0	0	0	0	1	0	0	0	9629	536	19	4	13804	4	MLL3	7	151962168	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	27557245	151962168	7176495	54	35694											
PRSS3	5646	bcgsc.ca	37	9	33796657	33796657	+	Silent	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	33796657	C	T	33796657	2	4	609	1	0	0	0	0	0	0	0	1	12632	535	19	1		1	PRSS3	9	33796657	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08		33796657	107416774	55	35695											
UCK1	83549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134404931	134404931	+	Silent	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	134404931	G	A	134404931	2	1	609	1	0	0	0	0	0	0	0	1	16935	1368	48	2		2	UCK1	9	134404931	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	100608274	134404931	6808500	56	35696											
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135156906	135156906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	135156906	T	C	135156906	3	2	609	1	0	0	0	0	1	0	0	0	14154	1609	56	3	1459	3	SETX	9	135156906	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	751975	135156906	6056525	57	35697											
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135781374	135781374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	135781374	C	T	135781374	3	4	609	1	0	0	0	0	1	0	0	0	16617	536	19	1	1939	1	TSC1	9	135781374	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	624468	135781374	5432057	58	35698											
SUV39H2	79723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	14939337	14939338	+	Missense_Mutation	DNP	AC	AC	TT	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	TT	14939338	AC	TT	14939337	3	4	609	1	0	0	0	0	1	0	0	0	15425	391	14	5	492	5	SUV39H2	10	14939337	Missense_Mutation	DNP	AC	TCGA-DW-7840-01A-11D-2136-08		14939337	120595410	59	35699											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	24835172	24835172	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	24835172	T	C	24835172	2	2	609	1	0	0	0	0	0	0	0	1	8223	1403	49	3		3	KIAA1217	10	24835172	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	9895835	24835172	110699575	60	35700											
ARMC4	55130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	28270470	28270470	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	28270470	T	C	28270470	2	2	609	1	0	0	0	0	0	0	0	1	953	1606	56	3		3	ARMC4	10	28270470	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	3435298	28270470	107264277	61	35701											
CUL2	8453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	35324145	35324145	+	Silent	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	35324145	G	T	35324145	2	4	609	1	0	0	0	0	0	0	0	1	4057	1164	41	4		4	CUL2	10	35324145	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	7053675	35324145	100210602	62	35702											
ALOX5	240	hgsc.bcm.edu;broad.mit.edu	37	10	45869784	45869784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	45869784	C	A	45869784	3	1	609	1	0	0	0	0	1	0	0	0	540	535	19	4	59	4	ALOX5	10	45869784	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	10545639	45869784	89664963	63	35703											
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	87407050	87407050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	87407050	T	C	87407050	3	2	609	1	0	0	0	0	1	0	0	0	6778	1580	55	3	943	3	GRID1	10	87407050	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	41537266	87407050	48127697	64	35704											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115411657	115411657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	115411657	T	C	115411657	3	2	609	1	0	0	0	0	1	0	0	0	10645	1763	61	3	4756	3	NRAP	10	115411657	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	28004607	115411657	20123090	65	35705											
DMBT1	1755	bcgsc.ca	37	10	124351971	124351971	+	Missense_Mutation	SNP	G	G	A	rs199833346		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	124351971	G	A	124351971	3	1	609	1	0	0	0	0	1	0	0	0	4579	1116	39	1	2438	1	DMBT1	10	124351971	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	8940314	124351971	11182776	66	35706											
IFITM1	8519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	315058	315058	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	315058	C	G	315058	3	3	609	1	0	0	0	0	1	0	0	0	7533	913	32	4	329	4	IFITM1	11	315058	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		315058	134691458	67	35707											
SIGIRR	59307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	407548	407548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	407548	A	G	407548	3	3	609	1	0	0	0	0	1	0	0	0	14317	420	15	3	750	3	SIGIRR	11	407548	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	92490	407548	134598968	68	35708											
TRIM3	10612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6479061	6479061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	6479061	C	T	6479061	3	4	609	1	0	0	0	0	1	0	0	0	16516	478	17	2	1890	2	TRIM3	11	6479061	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	6071513	6479061	128527455	69	35709											
ALKBH3	221120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	43905565	43905565	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	43905565	T	C	43905565	2	2	609	1	0	0	0	0	0	0	0	1	528	1800	63	3		3	ALKBH3	11	43905565	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	37426504	43905565	91100951	70	35710											
RCE1	9986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66613413	66613413	+	Silent	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	66613413	A	C	66613413	2	2	609	1	0	0	0	0	0	0	0	1	13189	146	6	5		5	RCE1	11	66613413	Silent	SNP	A	TCGA-DW-7840-01A-11D-2136-08	22707848	66613413	68393103	71	35711			1	72		4	4	12476	N	A_-	1.728934e-05
PC	5091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66617140	66617141	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	66617141	-	G	66617140	7	5	609	1	0	1	1	0	0	0	0	0	11504	188	7	0	459	0	PC	11	66617140	Frame_Shift_Ins	INS	-	TCGA-DW-7840-01A-11D-2136-08	3727	66617140	68389376	72	35712			1	72		4	4	12476	N	A_-	1.728934e-05
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66620716	66620716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	66620716	A	T	66620716	3	4	609	1	0	0	0	0	1	0	0	0	11504	420	15	5	2073	5	PC	11	66620716	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	3576	66620716	68385800	73	35713			1	72		4	4	12476	N	A_-	1.728934e-05
LRFN4	78999	broad.mit.edu	37	11	66625888	66625889	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	66625889	-	C	66625888	7	5	609	1	0	1	1	0	0	0	0	0	8947	1087	38	0	675	0	LRFN4	11	66625888	Frame_Shift_Ins	INS	-	TCGA-DW-7840-01A-11D-2136-08	5172	66625888	68380628	74	35714			1	72		4	4	12476	N	A_-	1.728934e-05
UVRAG	7405	hgsc.bcm.edu	37	11	75526481	75526481	+	Missense_Mutation	SNP	C	C	A	rs7118567		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	75526481	C	A	75526481	3	1	609	1	0	0	0	0	1	0	0	0	17120	623	22	4	31	4	UVRAG	11	75526481	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	8900593	75526481	59480035	75	35715											
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118513026	118513026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	118513026	A	T	118513026	3	4	609	1	0	0	0	0	1	0	0	0	11858	333	12	5	2837	5	PHLDB1	11	118513026	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	42986545	118513026	16493490	76	35716											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12334248	12334248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	12334248	C	T	12334248	3	4	609	1	0	0	0	0	1	0	0	0	8969	884	31	1	3811	1	LRP6	12	12334248	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		12334248	121517647	77	35717											
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	81671123	81671123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	81671123	G	A	81671123	3	1	609	1	0	0	0	0	1	0	0	0	12317	1144	40	1	510	1	PPFIA2	12	81671123	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	69336875	81671123	52180772	78	35718											
RASSF9	9182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	86199543	86199543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	86199543	T	C	86199543	3	2	609	1	0	0	0	0	1	0	0	0	13106	1609	56	3	1066	3	RASSF9	12	86199543	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	4528420	86199543	47652352	79	35719											
ANKS1B	56899	hgsc.bcm.edu	37	12	100048989	100048989	+	Splice_Site	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	100048989	C	G	100048989	5	3	609	1	0	0	0	0	0	0	1	0	689	927	32	4	2978	4	ANKS1B	12	100048989	Splice_Site	SNP	C	TCGA-DW-7840-01A-11D-2136-08	13849446	100048989	33802906	80	35720											
TDG	6996	hgsc.bcm.edu	37	12	104378526	104378526	+	Splice_Site	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	104378526	G	T	104378526	5	4	609	1	0	0	0	0	0	0	1	0	15737	985	34	4	822	4	TDG	12	104378526	Splice_Site	SNP	G	TCGA-DW-7840-01A-11D-2136-08	4329537	104378526	29473369	81	35721											
ATP2A2	488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	110765478	110765478	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	-	110765478	C	-	110765478	7	5	609	1	0	1	0	1	0	0	0	0	1137	711	25	0	781	0	ATP2A2	12	110765478	Frame_Shift_Del	DEL	C	TCGA-DW-7840-01A-11D-2136-08	6386952	110765478	23086417	82	35722											
NCOR2	9612	hgsc.bcm.edu	37	12	124829474	124829474	+	Silent	SNP	G	G	A	rs61241227		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	124829474	G	A	124829474	2	1	609	1	0	0	0	0	0	0	0	1	10243	1103	39	1		1	NCOR2	12	124829474	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	14063996	124829474	9022421	83	35723											
SCARB1	949	hgsc.bcm.edu	37	12	125348148	125348148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	125348148	A	G	125348148	3	3	609	1	0	0	0	0	1	0	0	0	13894	275	10	3	1582	3	SCARB1	12	125348148	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	518674	125348148	8503747	84	35724											
POLE	5426	hgsc.bcm.edu	37	12	133235892	133235892	+	Silent	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	133235892	A	G	133235892	2	3	609	1	0	0	0	0	0	0	0	1	12203	175	7	3		3	POLE	12	133235892	Silent	SNP	A	TCGA-DW-7840-01A-11D-2136-08	7887744	133235892	616003	85	35725											
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102906785	102906786	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	TT	102906786	GG	TT	102906785	3	4	609	1	0	0	0	0	1	0	0	0	15756	1357	47	4	2629	4	TECPR2	14	102906785	Missense_Mutation	DNP	GG	TCGA-DW-7840-01A-11D-2136-08		102906785	4442755	86	35726											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31362391	31362391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	31362391	G	T	31362391	3	4	609	1	0	0	0	0	1	0	0	0	16597	1000	35	4	4855	4	TRPM1	15	31362391	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08		31362391	71169001	87	35727											
SLC12A1	6557	hgsc.bcm.edu	37	15	48584051	48584051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	48584051	A	G	48584051	3	3	609	1	0	0	0	0	1	0	0	0	14395	14	1	3	3140	3	SLC12A1	15	48584051	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	17221660	48584051	53947341	88	35728											
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65223120	65223120	+	Splice_Site	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	65223120	T	G	65223120	5	3	609	1	0	0	0	0	0	0	1	0	624	1710	59	5	697	5	ANKDD1A	15	65223120	Splice_Site	SNP	T	TCGA-DW-7840-01A-11D-2136-08	16639069	65223120	37308272	89	35729											
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65684505	65684505	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	65684505	T	A	65684505	4	1	609	1	0	0	0	0	0	1	0	0	7576	1792	62	5	1703	5	IGDCC4	15	65684505	Nonsense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	461385	65684505	36846887	90	35730											
MAP2K5	5607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	67985904	67985904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	67985904	G	T	67985904	3	4	609	1	0	0	0	0	1	0	0	0	9247	1203	42	4	1028	4	MAP2K5	15	67985904	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	2301399	67985904	34545488	91	35731											
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78485857	78485857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	78485857	C	G	78485857	3	3	609	1	0	0	0	0	1	0	0	0	173	912	32	4	1560	4	ACSBG1	15	78485857	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	10499953	78485857	24045535	92	35732											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	79254568	79254568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	79254568	T	C	79254568	3	2	609	1	0	0	0	0	1	0	0	0	13085	1406	49	3	85	3	RASGRF1	15	79254568	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	768711	79254568	23276824	93	35733											
PKD1	5310	broad.mit.edu	37	16	2142548	2142548	+	Silent	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	2142548	G	A	2142548	2	1	609	1	0	0	0	0	0	0	0	1	11970	1140	40	1		1	PKD1	16	2142548	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08		2142548	88212205	94	35734											
SENP3	26168	broad.mit.edu	37	17	7470323	7470323	+	Splice_Site	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	7470323	G	A	7470323	5	1	609	1	0	0	0	0	0	0	1	0	14061	1159	40	1	1365	1	SENP3	17	7470323	Splice_Site	SNP	G	TCGA-DW-7840-01A-11D-2136-08		7470323	73724887	95	35735											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10312636	10312636	+	Silent	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	10312636	A	T	10312636	2	4	609	1	0	0	0	0	0	0	0	1	10048	291	11	5		5	MYH8	17	10312636	Silent	SNP	A	TCGA-DW-7840-01A-11D-2136-08	2842313	10312636	70882574	96	35736											
AATK	9625	hgsc.bcm.edu	37	17	79096272	79096272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	79096272	C	A	79096272	3	1	609	1	0	0	0	0	1	0	0	0	26	680	24	4	2676	4	AATK	17	79096272	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	68783636	79096272	2098938	97	35737											
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	758211	758211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	758211	C	A	758211	3	1	609	1	0	0	0	0	1	0	0	0	1915	681	24	4	1267	4	C19orf21	19	758211	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		758211	58370772	98	35738											
ZNF557	79230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7083599	7083599	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	7083599	T	C	7083599	2	2	609	1	0	0	0	0	0	0	0	1	18000	1693	59	3		3	ZNF557	19	7083599	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	6325388	7083599	52045384	99	35739											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11135092	11135092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	11135092	A	G	11135092	3	3	609	1	0	0	0	0	1	0	0	0	14783	333	12	3	3137	3	SMARCA4	19	11135092	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	4051493	11135092	47993891	100	35740											
ZNF443	10224	hgsc.bcm.edu;broad.mit.edu	37	19	12541116	12541116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	12541116	C	T	12541116	3	4	609	1	0	0	0	0	1	0	0	0	17928	797	28	2	149	2	ZNF443	19	12541116	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	1406024	12541116	46587867	101	35741											
NOSIP	51070	hgsc.bcm.edu	37	19	50060443	50060443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	50060443	G	C	50060443	3	2	609	1	0	0	0	0	1	0	0	0	10552	1328	46	4	603	4	NOSIP	19	50060443	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	37519327	50060443	9068540	102	35742											
ZSCAN5A	79149	bcgsc.ca	37	19	56733626	56733626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	56733626	T	C	56733626	3	2	609	1	0	0	0	0	1	0	0	0	18250	1667	58	3	685	3	ZSCAN5A	19	56733626	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	6673183	56733626	2395357	103	35743											
ZNF814	730051	broad.mit.edu	37	19	58386399	58386399	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	-	58386399	T	-	58386399	7	5	609	1	0	1	0	1	0	0	0	0	18188	1696	59	0	2212	0	ZNF814	19	58386399	Frame_Shift_Del	DEL	T	TCGA-DW-7840-01A-11D-2136-08	1652773	58386399	742584	104	35744											
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31374365	31374365	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	31374365	C	G	31374365	3	3	609	1	0	0	0	0	1	0	0	0	4679	536	19	4	418	4	DNMT3B	20	31374365	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		31374365	31651155	105	35745											
MMP24	10893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	33851627	33851627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	33851627	T	C	33851627	3	2	609	1	0	0	0	0	1	0	0	0	9668	1580	55	3	619	3	MMP24	20	33851627	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	2477262	33851627	29173893	106	35746											
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	42203603	42203603	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	-	42203603	T	-	42203603	7	5	609	1	0	1	0	1	0	0	0	0	14222	1696	59	0	866	0	SGK2	20	42203603	Frame_Shift_Del	DEL	T	TCGA-DW-7840-01A-11D-2136-08	8351976	42203603	20821917	107	35747											
KRTAP10-12	386685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46117131	46117131	+	Silent	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	46117131	C	T	46117131	2	4	609	1	0	0	0	0	0	0	0	1	8515	581	21	2		2	KRTAP10-12	21	46117131	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08		46117131	2012764	108	35748											
C21orf58	54058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47731374	47731374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	47731374	C	A	47731374	3	1	609	1	0	0	0	0	1	0	0	0	2131	680	24	4	263	4	C21orf58	21	47731374	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	1614243	47731374	398521	109	35749											
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29445939	29445939	+	Silent	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	29445939	C	G	29445939	2	3	609	1	0	0	0	0	0	0	0	1	18225	813	29	4		4	ZNRF3	22	29445939	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08		29445939	21858627	110	35750											
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	32754385	32754386	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	-	32754386	GC	-	32754385	7	5	609	1	0	1	0	1	0	0	0	0	13268	962	34	0	329	0	RFPL3	22	32754385	Frame_Shift_Del	DEL	GC	TCGA-DW-7840-01A-11D-2136-08	3308446	32754385	18550181	111	35751											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41574164	41574176	+	Frame_Shift_Del	DEL	CACAGCAGCAACT	CACAGCAGCAACT	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	CACAGCAGCAACT	CACAGCAGCAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	-	41574176	CACAGCAGCAACT	-	41574164	7	5	609	1	0	1	0	1	0	0	0	0	5150	594	21	0	6571	0	EP300	22	41574164	Frame_Shift_Del	DEL	CACAGCAGCAACT	TCGA-DW-7840-01A-11D-2136-08	8819779	41574164	9730402	112	35752											
TXLNG	55787	hgsc.bcm.edu	37	X	16804661	16804661	+	Silent	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	G	16804661	A	G	16804661	2	3	609	1	0	0	0	0	0	0	0	1	16801	69	3	3		3	TXLNG	23	16804661	Silent	SNP	A	TCGA-DW-7840-01A-11D-2136-08		16804661	138465899	113	35753											
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	19626146	19626146	+	Silent	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	19626146	G	T	19626146	2	4	609	1	0	0	0	0	0	0	0	1	14268	958	34	4		4	SH3KBP1	23	19626146	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	2821485	19626146	135644414	114	35754											
MAGEB4	4115	broad.mit.edu	37	X	30261230	30261230	+	Silent	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	A	30261230	C	A	30261230	2	1	609	1	0	0	0	0	0	0	0	1	9185	697	25	4		4	MAGEB4	23	30261230	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	10635084	30261230	125009330	115	35755											
KDM5C	8242	bcgsc.ca	37	X	53239616	53239616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	53239616	G	T	53239616	3	4	609	1	0	0	0	0	1	0	0	0	8142	1000	35	4	3114	4	KDM5C	23	53239616	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	22978386	53239616	102030944	116	35756											
PCDH11X	27328	ucsc.edu;bcgsc.ca	37	X	91456392	91456392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	T	91456392	C	T	91456392	4	4	609	1	0	0	0	0	0	1	0	0	11515	760	27	1	3144	1	PCDH11X	23	91456392	Nonsense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	38216776	91456392	63814168	117	35757											
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	125685498	125685498	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	C	125685498	A	C	125685498	3	2	609	1	0	0	0	0	1	0	0	0	4266	159	6	5	301	5	DCAF12L1	23	125685498	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	34229106	125685498	29585062	118	35758											
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	8075357	8075374	+	Frame_Shift_Del	DEL	AGAATACATACCAAGTGG	AGAATACATACCAAGTGG	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	AGAATACATACCAAGTGG	AGAATACATACCAAGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	-	8075374	AGAATACATACCAAGTGG	-	8075357	7	5	610	1	0	1	0	1	0	0	0	0	5246	203	7	0		0	ERRFI1	1	8075357	Frame_Shift_Del	DEL	AGAATACATACCAAGTGG	TCGA-DW-7841-01A-11D-2136-08		8075357	241175264	1	35759											
FBXO2	26232	hgsc.bcm.edu	37	1	11710791	11710791	+	Silent	SNP	C	C	G	rs61749273	bycluster	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	11710791	C	G	11710791	2	3	610	1	0	0	0	0	0	0	0	1	5739	639	23	4		4	FBXO2	1	11710791	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08	3635434	11710791	237539830	2	35760											
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85648788	85648788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	85648788	T	C	85648788	3	2	610	1	0	0	0	0	1	0	0	0	15448	1754	61	3	2067	3	SYDE2	1	85648788	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	73937997	85648788	163601833	3	35761											
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209800244	209800244	+	Missense_Mutation	SNP	C	C	T	rs144249951		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	209800244	C	T	209800244	3	4	610	1	0	0	0	0	1	0	0	0	8619	652	23	1	1997	1	LAMB3	1	209800244	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	124151456	209800244	39450377	4	35762											
FBXO28	23219	hgsc.bcm.edu;broad.mit.edu	37	1	224302059	224302059	+	Silent	SNP	C	C	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	224302059	C	G	224302059	2	3	610	1	0	0	0	0	0	0	0	1	5745	813	29	4		4	FBXO28	1	224302059	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08	14501815	224302059	24948562	5	35763											
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44207047	44207047	+	Silent	SNP	A	A	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	44207047	A	G	44207047	2	3	610	1	0	0	0	0	0	0	0	1	8972	40	2	3		3	LRPPRC	2	44207047	Silent	SNP	A	TCGA-DW-7841-01A-11D-2136-08		44207047	198992326	6	35764											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	148684830	148684834	+	Frame_Shift_Del	DEL	AATCT	AATCT	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	AATCT	AATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	-	148684834	AATCT	-	148684830	7	5	610	1	0	1	0	1	0	0	0	0	223	246	9	0	1571	0	ACVR2A	2	148684830	Frame_Shift_Del	DEL	AATCT	TCGA-DW-7841-01A-11D-2136-08	104477783	148684830	94514543	7	35765											
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	167284362	167284362	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	167284362	A	T	167284362	3	4	610	1	0	0	0	0	1	0	0	0	13936	101	4	5	2295	5	SCN7A	2	167284362	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08	18599532	167284362	75915011	8	35766											
SHISA5	51246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48510782	48510782	+	Silent	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	48510782	C	T	48510782	2	4	610	1	0	0	0	0	0	0	0	1	14296	639	23	1		1	SHISA5	3	48510782	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08		48510782	149511648	9	35767											
SLC35A5	55032	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	112282282	112282290	+	In_Frame_Del	DEL	TATGCTCCT	TATGCTCCT	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	TATGCTCCT	TATGCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	-	112282290	TATGCTCCT	-	112282282	7	5	610	1	0	1	0	1	0	0	0	0	14587	1406	49	0	34	0	SLC35A5	3	112282282	In_Frame_Del	DEL	TATGCTCCT	TCGA-DW-7841-01A-11D-2136-08	63771500	112282282	85740148	10	35768											
KPNA4	3840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160249310	160249310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	160249310	T	C	160249310	3	2	610	1	0	0	0	0	1	0	0	0	8439	1435	50	3	1290	3	KPNA4	3	160249310	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	47967028	160249310	37773120	11	35769											
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	42037333	42037333	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	42037333	T	G	42037333	3	3	610	1	0	0	0	0	1	0	0	0	14575	1841	64	5	678	5	SLC30A9	4	42037333	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08		42037333	149116943	12	35770											
PRDM9	56979	hgsc.bcm.edu	37	5	23526915	23526915	+	Missense_Mutation	SNP	T	T	C	rs199686868	alternate_allele	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	23526915	T	C	23526915	3	2	610	1	0	0	0	0	1	0	0	0	12473	1406	49	3	1756	3	PRDM9	5	23526915	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08		23526915	157388345	13	35771											
ZCCHC9	84240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	80600585	80600585	+	Silent	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	80600585	G	A	80600585	2	1	610	1	0	0	0	0	0	0	0	1	17607	1252	44	2		2	ZCCHC9	5	80600585	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08	57073670	80600585	100314675	14	35772											
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140753888	140753888	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	140753888	C	T	140753888	4	4	610	1	0	0	0	0	0	1	0	0	11565	760	27	1	240	1	PCDHGA6	5	140753888	Nonsense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	60153303	140753888	40161372	15	35773											
PWWP2A	114825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	159520919	159520919	+	Silent	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	159520919	G	A	159520919	2	1	610	1	0	0	0	0	0	0	0	1	12858	1161	41	2		2	PWWP2A	5	159520919	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08	18767031	159520919	21394341	16	35774											
RPL10A	4736	broad.mit.edu	37	6	35436591	35436591	+	Silent	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	35436591	C	T	35436591	2	4	610	1	0	0	0	0	0	0	0	1	13568	755	27	1		1	RPL10A	6	35436591	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08		35436591	135678476	17	35775											
TNFAIP3	7128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	138200108	138200108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	138200108	C	T	138200108	3	4	610	1	0	0	0	0	1	0	0	0	16286	739	26	2	1548	2	TNFAIP3	6	138200108	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	102763517	138200108	32914959	18	35776											
CBX3	11335	hgsc.bcm.edu	37	7	26251700	26251700	+	Splice_Site	SNP	A	A	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	26251700	A	T	26251700	5	4	610	1	0	0	0	0	0	0	1	0	2721	202	7	5	442	5	CBX3	7	26251700	Splice_Site	SNP	A	TCGA-DW-7841-01A-11D-2136-08		26251700	132886963	19	35777											
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38880710	38880711	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	GG	38880711	-	GG	38880710	7	5	610	1	0	1	1	0	0	0	0	0	253	1799	63	0	814	0	ADAM9	8	38880710	Frame_Shift_Ins	INS	-	TCGA-DW-7841-01A-11D-2136-08		38880710	107483312	20	35778											
FAM91A1	157769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124787418	124787418	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	124787418	C	A	124787418	4	1	610	1	0	0	0	0	0	1	0	0	5658	576	20	4	199	4	FAM91A1	8	124787418	Nonsense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	85906708	124787418	21576604	21	35779											
SUSD1	64420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	114820886	114820886	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	-	114820886	C	-	114820886	7	5	610	1	0	1	0	1	0	0	0	0	15419	797	28	0	328	0	SUSD1	9	114820886	Frame_Shift_Del	DEL	C	TCGA-DW-7841-01A-11D-2136-08		114820886	26392545	22	35780	465	3									
SUSD1	64420	hgsc.bcm.edu;bcgsc.ca	37	9	114820888	114820888	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	114820888	A	T	114820888	3	4	610	1	0	0	0	0	1	0	0	0	15419	359	13	5	330	5	SUSD1	9	114820888	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08	2	114820888	26392543	23	35781	465	3									
SUSD1	64420	hgsc.bcm.edu	37	9	114820890	114820890	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	-	114820890	A	-	114820890	7	5	610	1	0	1	0	1	0	0	0	0	15419	72	3	0	332	0	SUSD1	9	114820890	Frame_Shift_Del	DEL	A	TCGA-DW-7841-01A-11D-2136-08	2	114820890	26392541	24	35782	465	3									
BSPRY	54836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116132384	116132384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	116132384	T	A	116132384	3	1	610	1	0	0	0	0	1	0	0	0	1534	1609	56	5	1193	5	BSPRY	9	116132384	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	1311494	116132384	25081047	25	35783											
DFNB31	25861	hgsc.bcm.edu	37	9	117170277	117170277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	117170277	T	C	117170277	3	2	610	1	0	0	0	0	1	0	0	0	4457	1725	60	3	1095	3	DFNB31	9	117170277	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	1037893	117170277	24043154	26	35784											
RPL7A	6130	ucsc.edu	37	9	136216909	136216909	+	Splice_Site	SNP	T	T	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	136216909	T	A	136216909	5	1	610	1	0	0	0	0	0	0	1	0	13613	1710	59	5	431	5	RPL7A	9	136216909	Splice_Site	SNP	T	TCGA-DW-7841-01A-11D-2136-08	19046632	136216909	4996522	27	35785											
C9orf172	389813	broad.mit.edu	37	9	139739071	139739071	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	139739071	G	C	139739071	3	2	610	1	0	0	0	0	1	0	0	0	2473	1175	41	4	207	4	C9orf172	9	139739071	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	3522162	139739071	1474360	28	35786											
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	105793785	105793785	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	-	105793785	G	-	105793785	7	5	610	1	0	1	0	1	0	0	0	0	3676	1306	46	0	439	0	COL17A1	10	105793785	Frame_Shift_Del	DEL	G	TCGA-DW-7841-01A-11D-2136-08		105793785	29740962	29	35787											
SBF2	81846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10011061	10011061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	10011061	C	T	10011061	3	4	610	1	0	0	0	0	1	0	0	0	13872	835	29	2	4283	2	SBF2	11	10011061	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		10011061	124995455	30	35788											
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74880776	74880776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	74880776	C	A	74880776	3	1	610	1	0	0	0	0	1	0	0	0	14740	768	27	4	770	4	SLCO2B1	11	74880776	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	64869715	74880776	60125740	31	35789											
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57005874	57005874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	57005874	G	A	57005874	3	1	610	1	0	0	0	0	1	0	0	0	1331	1261	44	2	4515	2	BAZ2A	12	57005874	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08		57005874	76846021	32	35790											
ASCL1	429	hgsc.bcm.edu	37	12	103352211	103352211	+	Silent	SNP	G	G	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	103352211	G	C	103352211	2	2	610	1	0	0	0	0	0	0	0	1	1034	1074	38	4		4	ASCL1	12	103352211	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08	46346337	103352211	30499684	33	35791											
KBTBD7	84078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41767953	41767953	+	Silent	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	41767953	G	A	41767953	2	1	610	1	0	0	0	0	0	0	0	1	8005	987	35	2		2	KBTBD7	13	41767953	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08		41767953	73401925	34	35792											
PCDH8	5100	broad.mit.edu	37	13	53421017	53421018	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	AT	53421018	-	AT	53421017	7	5	610	1	0	1	1	0	0	0	0	0	11524	507	18	0	1669	0	PCDH8	13	53421017	Frame_Shift_Ins	INS	-	TCGA-DW-7841-01A-11D-2136-08	11653064	53421017	61748861	35	35793											
TDRD3	81550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	61103190	61103190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	61103190	G	A	61103190	3	1	610	1	0	0	0	0	1	0	0	0	15744	971	34	2	1873	2	TDRD3	13	61103190	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	7682173	61103190	54066688	36	35794											
SLC7A8	23428	hgsc.bcm.edu	37	14	23597353	23597353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	23597353	A	G	23597353	3	3	610	1	0	0	0	0	1	0	0	0	14717	275	10	3	299	3	SLC7A8	14	23597353	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08		23597353	83752187	37	35795											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45650876	45650876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	45650876	G	A	45650876	3	1	610	1	0	0	0	0	1	0	0	0	5678	1319	46	2	4416	2	FANCM	14	45650876	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	22053523	45650876	61698664	38	35796											
TBPL2	387332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55890942	55890942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	55890942	A	C	55890942	3	2	610	1	0	0	0	0	1	0	0	0	15658	101	4	5	149	5	TBPL2	14	55890942	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08	10240066	55890942	51458598	39	35797											
GPR135	64582	hgsc.bcm.edu	37	14	59931931	59931931	+	Missense_Mutation	SNP	T	T	G	rs1752428		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	59931931	T	G	59931931	3	3	610	1	0	0	0	0	1	0	0	0	6651	1580	55	5	1474	5	GPR135	14	59931931	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	4040989	59931931	47417609	40	35798											
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	63447722	63447722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	63447722	G	T	63447722	3	4	610	1	0	0	0	0	1	0	0	0	8042	1049	37	4	2214	4	KCNH5	14	63447722	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	3515791	63447722	43901818	41	35799											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	33603296	33603296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	33603296	C	T	33603296	3	4	610	1	0	0	0	0	1	0	0	0	13783	579	20	2	52	2	RYR3	15	33603296	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		33603296	68928096	42	35800											
ADPGK	83440	hgsc.bcm.edu	37	15	73045222	73045222	+	Silent	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	73045222	C	A	73045222	2	1	610	1	0	0	0	0	0	0	0	1	330	639	23	4		4	ADPGK	15	73045222	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08	39441926	73045222	29486170	43	35801											
CSPG4	1464	hgsc.bcm.edu	37	15	75982391	75982391	+	Missense_Mutation	SNP	G	G	A	rs200187536		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	75982391	G	A	75982391	3	1	610	1	0	0	0	0	1	0	0	0	3962	1116	39	1	5985	1	CSPG4	15	75982391	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	2937169	75982391	26549001	44	35802											
WDR90	197335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	716291	716291	+	Missense_Mutation	SNP	C	C	A	rs143767432	alternate_allele	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	716291	C	A	716291	3	1	610	1	0	0	0	0	1	0	0	0	17349	652	23	4	4827	4	WDR90	16	716291	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		716291	89638462	45	35803											
TMC5	79838	hgsc.bcm.edu	37	16	19498618	19498618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	19498618	T	C	19498618	3	2	610	1	0	0	0	0	1	0	0	0	16000	1667	58	3	2915	3	TMC5	16	19498618	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	18782327	19498618	70856135	46	35804											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27519910	27519910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	27519910	A	G	27519910	3	3	610	1	0	0	0	0	1	0	0	0	6879	420	15	3	5256	3	GTF3C1	16	27519910	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08	8021292	27519910	62834843	47	35805											
PELP1	27043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4575082	4575082	+	Silent	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	4575082	C	T	4575082	2	4	610	1	0	0	0	0	0	0	0	1	11732	912	32	2		2	PELP1	17	4575082	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08		4575082	76620128	48	35806											
SOX15	6665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7492754	7492754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	7492754	T	C	7492754	3	2	610	1	0	0	0	0	1	0	0	0	14959	1821	63	3	468	3	SOX15	17	7492754	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	2917672	7492754	73702456	49	35807											
TMEM88	92162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7758402	7758402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	7758402	G	T	7758402	3	4	610	1	0	0	0	0	1	0	0	0	16224	1377	48	4	12	4	TMEM88	17	7758402	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	265648	7758402	73436808	50	35808											
TLCD1	116238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27052951	27052951	+	Silent	SNP	G	G	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	27052951	G	T	27052951	2	4	610	1	0	0	0	0	0	0	0	1	15949	1335	47	4		4	TLCD1	17	27052951	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08	19294549	27052951	54142259	51	35809											
PIPOX	51268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27380072	27380083	+	In_Frame_Del	DEL	GGTTGCCCAGGG	GGTTGCCCAGGG	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	GGTTGCCCAGGG	GGTTGCCCAGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	-	27380083	GGTTGCCCAGGG	-	27380072	7	5	610	1	0	1	0	1	0	0	0	0	11950	1116	39	0	408	0	PIPOX	17	27380072	In_Frame_Del	DEL	GGTTGCCCAGGG	TCGA-DW-7841-01A-11D-2136-08	327121	27380072	53815138	52	35810											
DDX52	11056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36003445	36003445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	36003445	T	C	36003445	3	2	610	1	0	0	0	0	1	0	0	0	4372	1667	58	3	1854	3	DDX52	17	36003445	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	8623373	36003445	45191765	53	35811											
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38933310	38933310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	38933310	T	C	38933310	3	2	610	1	0	0	0	0	1	0	0	0	8471	1696	59	3	62	3	KRT27	17	38933310	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	2929865	38933310	42261900	54	35812											
FOXJ1	2302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74134123	74134123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	74134123	C	A	74134123	3	1	610	1	0	0	0	0	1	0	0	0	6018	623	22	4	692	4	FOXJ1	17	74134123	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	35200813	74134123	7061087	55	35813											
C17orf70	80233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	79514289	79514299	+	Frame_Shift_Del	DEL	TGAGACTGTAG	TGAGACTGTAG	-	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	TGAGACTGTAG	TGAGACTGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	-	79514299	TGAGACTGTAG	-	79514289	7	5	610	1	0	1	0	1	0	0	0	0	1879	1579	55	0	846	0	C17orf70	17	79514289	Frame_Shift_Del	DEL	TGAGACTGTAG	TCGA-DW-7841-01A-11D-2136-08	5380166	79514289	1680921	56	35814											
ARID3A	1820	hgsc.bcm.edu	37	19	971936	971936	+	Silent	SNP	C	C	G	rs138086881	byfrequency;alternate_allele	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	971936	C	G	971936	2	3	610	1	0	0	0	0	0	0	0	1	916	755	27	4		4	ARID3A	19	971936	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08		971936	58157047	57	35815											
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8551158	8551158	+	Missense_Mutation	SNP	G	G	A	rs199749036		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	8551158	G	A	8551158	3	1	610	1	0	0	0	0	1	0	0	0	7278	1116	39	1	1900	1	HNRNPM	19	8551158	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	7579222	8551158	50577825	58	35816											
ZNF497	162968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58867603	58867603	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	A	58867603	C	A	58867603	4	1	610	1	0	0	0	0	0	1	0	0	17958	893	31	4	101	4	ZNF497	19	58867603	Nonsense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	50316445	58867603	261380	59	35817											
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56090837	56090837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	56090837	C	G	56090837	3	3	610	1	0	0	0	0	1	0	0	0	4003	564	20	4	902	4	CTCFL	20	56090837	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		56090837	6934683	60	35818											
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	44185564	44185565	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	G	44185565	-	G	44185564	7	5	610	1	0	1	1	0	0	0	0	0	11662	1464	51	0	1454	0	PDE9A	21	44185564	Frame_Shift_Ins	INS	-	TCGA-DW-7841-01A-11D-2136-08		44185564	3944331	61	35819											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18293564	18293564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	18293564	C	T	18293564	3	4	610	1	0	0	0	0	1	0	0	0	9578	864	30	2	567	2	MICAL3	22	18293564	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		18293564	33011002	62	35820											
AP1B1	162	hgsc.bcm.edu	37	22	29738275	29738275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	29738275	T	C	29738275	3	2	610	1	0	0	0	0	1	0	0	0	731	1594	55	3	1362	3	AP1B1	22	29738275	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	11444711	29738275	21566291	63	35821											
SEC14L2	23541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30805476	30805477	+	Splice_Site	INS	-	-	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	30805477	-	T	30805476	8	5	610	1	0	1	1	0	0	0	1	0	13995	1275	44	0	607	0	SEC14L2	22	30805476	Splice_Site	INS	-	TCGA-DW-7841-01A-11D-2136-08	1067201	30805476	20499090	64	35822											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42154472	42154472	+	Silent	SNP	A	A	C	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	C	42154472	A	C	42154472	2	2	610	1	0	0	0	0	0	0	0	1	9472	291	11	5		5	MEI1	22	42154472	Silent	SNP	A	TCGA-DW-7841-01A-11D-2136-08	11348996	42154472	9150094	65	35823											
POLDIP3	84271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	43010826	43010826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	43010826	C	T	43010826	3	4	610	1	0	0	0	0	1	0	0	0	12202	768	27	1	1263	1	POLDIP3	22	43010826	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	856354	43010826	8293740	66	35824											
MCAT	27349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	43533107	43533107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	T	43533107	C	T	43533107	3	4	610	1	0	0	0	0	1	0	0	0	9379	507	18	2	471	2	MCAT	22	43533107	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	522281	43533107	7771459	67	35825											
KIAA1522	57648	ucsc.edu;bcgsc.ca	37	1	33236309	33236309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	33236309	G	A	33236309	3	1	611	1	0	0	0	0	1	0	0	0	8245	1116	39	1	1551	1	KIAA1522	1	33236309	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08		33236309	216014312	1	35826											
FOXE3	2301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47882415	47882415	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	C	47882415	A	C	47882415	3	2	611	1	0	0	0	0	1	0	0	0	6011	43	2	5	430	5	FOXE3	1	47882415	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08	14646106	47882415	201368206	2	35827											
BCAR3	8412	hgsc.bcm.edu	37	1	94054978	94054978	+	Splice_Site	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	C	94054978	T	C	94054978	5	2	611	1	0	0	0	0	0	0	1	0	1349	1623	56	3	2024	3	BCAR3	1	94054978	Splice_Site	SNP	T	TCGA-DW-7842-01A-11D-2136-08	46172563	94054978	155195643	3	35828											
SYPL2	284612	ucsc.edu	37	1	110022091	110022091	+	Missense_Mutation	SNP	A	A	G	rs201865079		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	110022091	A	G	110022091	3	3	611	1	0	0	0	0	1	0	0	0	15475	275	10	3	762	3	SYPL2	1	110022091	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08	15967113	110022091	139228530	4	35829											
PEA15	8682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160181403	160181403	+	Silent	SNP	C	C	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	160181403	C	A	160181403	2	1	611	1	0	0	0	0	0	0	0	1	11718	813	29	4		4	PEA15	1	160181403	Silent	SNP	C	TCGA-DW-7842-01A-11D-2136-08	50159312	160181403	89069218	5	35830											
DENND1B	163486	hgsc.bcm.edu	37	1	197684159	197684159	+	Splice_Site	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	197684159	A	G	197684159	5	3	611	1	0	0	0	0	0	0	1	0	4429	57	2	3	2324	3	DENND1B	1	197684159	Splice_Site	SNP	A	TCGA-DW-7842-01A-11D-2136-08	37502756	197684159	51566462	6	35831											
APOB	338	bcgsc.ca	37	2	21232458	21232458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	21232458	T	G	21232458	3	3	611	1	0	0	0	0	1	0	0	0	785	1850	64	5	6425	5	APOB	2	21232458	Missense_Mutation	SNP	T	TCGA-DW-7842-01A-11D-2136-08		21232458	221966915	7	35832											
PROM2	150696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95941238	95941238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	95941238	G	A	95941238	3	1	611	1	0	0	0	0	1	0	0	0	12566	1203	42	2	280	2	PROM2	2	95941238	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	74708780	95941238	147258135	8	35833											
ATG16L1	55054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234173559	234173559	+	Silent	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	C	234173559	T	C	234173559	2	2	611	1	0	0	0	0	0	0	0	1	1091	1509	53	3		3	ATG16L1	2	234173559	Silent	SNP	T	TCGA-DW-7842-01A-11D-2136-08	138232321	234173559	9025814	9	35834											
SCRN1	9805	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	29994945	29994945	+	Missense_Mutation	SNP	C	C	T	rs75604334	byfrequency;alternate_allele	TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	T	29994945	C	T	29994945	3	4	611	1	0	0	0	0	1	0	0	0	13951	681	24	2	1077	2	SCRN1	7	29994945	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		29994945	129143718	10	35835											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	111368503	111368503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	C	111368503	G	C	111368503	3	2	611	1	0	0	0	0	1	0	0	0	4691	933	33	4	176	4	DOCK4	7	111368503	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	81373558	111368503	47770160	11	35836											
GALNT11	63917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151805279	151805279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	C	151805279	T	C	151805279	3	2	611	1	0	0	0	0	1	0	0	0	6216	1667	58	3	887	3	GALNT11	7	151805279	Missense_Mutation	SNP	T	TCGA-DW-7842-01A-11D-2136-08	40436776	151805279	7333384	12	35837											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2063780	2063780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	T	2063780	C	T	2063780	3	4	611	1	0	0	0	0	1	0	0	0	10099	565	20	2	3307	2	MYOM2	8	2063780	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		2063780	144300242	13	35838											
OPLAH	26873	hgsc.bcm.edu	37	8	145110805	145110805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	C	145110805	T	C	145110805	3	2	611	1	0	0	0	0	1	0	0	0	10883	1667	58	3	1782	3	OPLAH	8	145110805	Missense_Mutation	SNP	T	TCGA-DW-7842-01A-11D-2136-08	143047025	145110805	1253217	14	35839											
DNAJC25-GNG10	552891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114429094	114429094	+	Splice_Site	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	114429094	G	A	114429094	5	1	611	1	0	0	0	0	0	0	1	0	4646	1014	35	2	342	2	DNAJC25-GNG10	9	114429094	Splice_Site	SNP	G	TCGA-DW-7842-01A-11D-2136-08		114429094	26784337	15	35840											
ZER1	10444	hgsc.bcm.edu	37	9	131513498	131513498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	C	131513498	T	C	131513498	3	2	611	1	0	0	0	0	1	0	0	0	17637	1638	57	3	1252	3	ZER1	9	131513498	Missense_Mutation	SNP	T	TCGA-DW-7842-01A-11D-2136-08	17084404	131513498	9699933	16	35841											
VIM	7431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17276732	17276732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	17276732	C	G	17276732	3	3	611	1	0	0	0	0	1	0	0	0	17178	739	26	4	941	4	VIM	10	17276732	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		17276732	118258015	17	35842											
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24885703	24885704	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	24885704	-	G	24885703	7	5	611	1	0	1	1	0	0	0	0	0	871	884	31	0	2473	0	ARHGAP21	10	24885703	Frame_Shift_Ins	INS	-	TCGA-DW-7842-01A-11D-2136-08	7608971	24885703	110649044	18	35843											
C11orf49	79096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47074069	47074069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	T	47074069	G	T	47074069	3	4	611	1	0	0	0	0	1	0	0	0	1647	1130	39	4	290	4	C11orf49	11	47074069	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08		47074069	87932447	19	35844											
ANKRD13D	338692	hgsc.bcm.edu;bcgsc.ca	37	11	67059495	67059495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	67059495	A	G	67059495	3	3	611	1	0	0	0	0	1	0	0	0	644	275	10	3	597	3	ANKRD13D	11	67059495	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08	19985426	67059495	67947021	20	35845											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73020470	73020470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	73020470	G	A	73020470	3	1	611	1	0	0	0	0	1	0	0	0	900	1349	47	2	789	2	ARHGEF17	11	73020470	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	5960975	73020470	61986046	21	35846											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	76890090	76890090	+	Splice_Site	SNP	G	G	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	T	76890090	G	T	76890090	5	4	611	1	0	0	0	0	0	0	1	0	10089	1014	35	4	2356	4	MYO7A	11	76890090	Splice_Site	SNP	G	TCGA-DW-7842-01A-11D-2136-08	3869620	76890090	58116426	22	35847											
MED17	9440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93542943	93542943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	93542943	C	A	93542943	3	1	611	1	0	0	0	0	1	0	0	0	9442	564	20	4	1687	4	MED17	11	93542943	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08	16652853	93542943	41463573	23	35848											
VPS26B	112936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	134115448	134115448	+	Silent	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	T	134115448	C	T	134115448	2	4	611	1	0	0	0	0	0	0	0	1	17210	610	22	2		2	VPS26B	11	134115448	Silent	SNP	C	TCGA-DW-7842-01A-11D-2136-08	40572505	134115448	891068	24	35849											
RPAP3	79657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48080648	48080648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	T	48080648	C	T	48080648	3	4	611	1	0	0	0	0	1	0	0	0	13556	835	29	2	1126	2	RPAP3	12	48080648	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		48080648	85771247	25	35850											
PTGDR	5729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	52734893	52734894	+	Missense_Mutation	DNP	CT	CT	AG	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	AG	52734894	CT	AG	52734893	3	1	611	1	0	0	0	0	1	0	0	0	12751	564	20	4	363	4	PTGDR	14	52734893	Missense_Mutation	DNP	CT	TCGA-DW-7842-01A-11D-2136-08		52734893	54614647	26	35851											
PLA2G4F	255189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42442584	42442584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	42442584	A	G	42442584	3	3	611	1	0	0	0	0	1	0	0	0	12013	159	6	3	1725	3	PLA2G4F	15	42442584	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08		42442584	60088808	27	35852											
PKD1	5310	ucsc.edu	37	16	2168072	2168072	+	Silent	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	2168072	G	A	2168072	2	1	611	1	0	0	0	0	0	0	0	1	11970	1049	37	1		1	PKD1	16	2168072	Silent	SNP	G	TCGA-DW-7842-01A-11D-2136-08		2168072	88186681	28	35853											
KPNB1	3837	broad.mit.edu	37	17	45727756	45727756	+	Silent	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	45727756	G	A	45727756	2	1	611	1	0	0	0	0	0	0	0	1	8442	1190	42	2		2	KPNB1	17	45727756	Silent	SNP	G	TCGA-DW-7842-01A-11D-2136-08		45727756	35467454	29	35854											
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10487950	10487950	+	Missense_Mutation	SNP	G	G	A	rs112875590		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	10487950	G	A	10487950	3	1	611	1	0	0	0	0	1	0	0	0	765	1116	39	1	1478	1	APCDD1	18	10487950	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08		10487950	67589298	30	35855											
DSG4	147409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28980927	28980927	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	T	28980927	A	T	28980927	3	4	611	1	0	0	0	0	1	0	0	0	4781	72	3	5	1399	5	DSG4	18	28980927	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08	18492977	28980927	49096321	31	35856											
WDR18	57418	hgsc.bcm.edu;broad.mit.edu	37	19	992048	992048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	992048	A	G	992048	3	3	611	1	0	0	0	0	1	0	0	0	17290	159	6	3	1055	3	WDR18	19	992048	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08		992048	58136935	32	35857											
NDUFA11	126328	ucsc.edu	37	19	5897010	5897010	+	Splice_Site	SNP	T	T	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	5897010	T	A	5897010	5	1	611	1	0	0	0	0	0	0	1	0	10268	1594	55	5	341	5	NDUFA11	19	5897010	Splice_Site	SNP	T	TCGA-DW-7842-01A-11D-2136-08	4904962	5897010	53231973	33	35858											
TSHZ3	57616	hgsc.bcm.edu	37	19	31770237	31770237	+	Silent	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	31770237	A	G	31770237	2	3	611	1	0	0	0	0	0	0	0	1	16637	388	14	3		3	TSHZ3	19	31770237	Silent	SNP	A	TCGA-DW-7842-01A-11D-2136-08	25873227	31770237	27358746	34	35859											
AKT2	208	hgsc.bcm.edu	37	19	40743950	40743950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	40743950	G	A	40743950	3	1	611	1	0	0	0	0	1	0	0	0	480	1115	39	1	712	1	AKT2	19	40743950	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	8973713	40743950	18385033	35	35860											
PVRL2	5819	broad.mit.edu	37	19	45349842	45349844	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	-	45349844	GCT	-	45349842	7	5	611	1	0	1	0	1	0	0	0	0	12853	1074	38	0	62	0	PVRL2	19	45349842	In_Frame_Del	DEL	GCT	TCGA-DW-7842-01A-11D-2136-08	4605892	45349842	13779141	36	35861											
KLK7	5650	hgsc.bcm.edu	37	19	51485616	51485616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	C	51485616	G	C	51485616	3	2	611	1	0	0	0	0	1	0	0	0	8416	962	34	4	741	4	KLK7	19	51485616	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	6135774	51485616	7643367	37	35862											
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56511120	56511120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	A	56511120	G	A	56511120	3	1	611	1	0	0	0	0	1	0	0	0	10487	1174	41	2	31	2	NLRP5	19	56511120	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	5025504	56511120	2617863	38	35863											
SLC19A1	6573	hgsc.bcm.edu	37	21	46935688	46935688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	G	46935688	A	G	46935688	3	3	611	1	0	0	0	0	1	0	0	0	14441	304	11	3	119	3	SLC19A1	21	46935688	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08		46935688	1194207	39	35864											
ZBTB33	10009	broad.mit.edu	37	X	119387346	119387346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	T	119387346	C	T	119387346	3	4	611	1	0	0	0	0	1	0	0	0	17548	536	19	1	78	1	ZBTB33	23	119387346	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		119387346	35883214	40	35865											
KIAA2013	90231	hgsc.bcm.edu	37	1	11986231	11986231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	11986231	G	A	11986231	3	1	612	1	0	0	0	0	1	0	0	0	8274	1000	35	2	1852	2	KIAA2013	1	11986231	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		11986231	237264390	1	35866											
UBXN11	91544	hgsc.bcm.edu	37	1	26608848	26608853	+	In_Frame_Del	DEL	CTGGGG	CTGGGG	-	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	CTGGGG	CTGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	-	26608853	CTGGGG	-	26608848	7	5	612	1	0	1	0	1	0	0	0	0	16925	565	20	0	61	0	UBXN11	1	26608848	In_Frame_Del	DEL	CTGGGG	TCGA-DW-7963-01B-11D-A28G-10	14622617	26608848	222641773	2	35867			1	73		3	2	18	N	CTGGGG_C_A	3.020298e-05
UBXN11	91544	hgsc.bcm.edu	37	1	26608861	26608861	+	Missense_Mutation	SNP	C	C	T	rs200313935		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	26608861	C	T	26608861	3	4	612	1	0	0	0	0	1	0	0	0	16925	652	23	1	74	1	UBXN11	1	26608861	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	13	26608861	222641760	3	35868	466	2	1	73		3	2	18	N	CTGGGG_C_A	3.020298e-05
UBXN11	91544	hgsc.bcm.edu	37	1	26608865	26608865	+	Silent	SNP	A	A	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	G	26608865	A	G	26608865	2	3	612	1	0	0	0	0	0	0	0	1	16925	262	10	3		3	UBXN11	1	26608865	Silent	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	4	26608865	222641756	4	35869	466	2	1	73		3	2	18	N	CTGGGG_C_A	3.020298e-05
LAPTM5	7805	broad.mit.edu	37	1	31208088	31208088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	31208088	G	A	31208088	3	1	612	1	0	0	0	0	1	0	0	0	8633	1086	38	1	165	1	LAPTM5	1	31208088	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	4599223	31208088	218042533	5	35870											
ECHDC2	55268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53362195	53362195	+	Silent	SNP	T	T	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	C	53362195	T	C	53362195	2	2	612	1	0	0	0	0	0	0	0	1	4896	1490	52	3		3	ECHDC2	1	53362195	Silent	SNP	T	TCGA-DW-7963-01B-11D-A28G-10	22154107	53362195	195888426	6	35871											
RNF2	6045	broad.mit.edu	37	1	185060812	185060812	+	Silent	SNP	T	T	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	C	185060812	T	C	185060812	2	2	612	1	0	0	0	0	0	0	0	1	13485	1509	53	3		3	RNF2	1	185060812	Silent	SNP	T	TCGA-DW-7963-01B-11D-A28G-10	131698617	185060812	64189809	7	35872											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216262462	216262462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	216262462	G	T	216262462	3	4	612	1	0	0	0	0	1	0	0	0	17048	1029	36	4	11030	4	USH2A	1	216262462	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	31201650	216262462	32988159	8	35873											
OBSCN	84033	broad.mit.edu	37	1	228444409	228444410	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	G	228444410	-	G	228444409	7	5	612	1	0	1	1	0	0	0	0	0	10819	768	27	0	4421	0	OBSCN	1	228444409	Frame_Shift_Ins	INS	-	TCGA-DW-7963-01B-11D-A28G-10	12181947	228444409	20806212	9	35874											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237730023	237730023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	G	237730023	C	G	237730023	3	3	612	1	0	0	0	0	1	0	0	0	13782	652	23	4	3481	4	RYR2	1	237730023	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	9285614	237730023	11520598	10	35875											
OXER1	165140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	42990999	42990999	+	Silent	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	42990999	C	A	42990999	2	1	612	1	0	0	0	0	0	0	0	1	11338	581	21	4		4	OXER1	2	42990999	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		42990999	200208374	11	35876											
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	125298795	125298795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	125298795	A	T	125298795	3	4	612	1	0	0	0	0	1	0	0	0	11283	72	3	5	1964	5	OSBPL11	3	125298795	Missense_Mutation	SNP	A	TCGA-DW-7963-01B-11D-A28G-10		125298795	72723635	12	35877											
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132418235	132418235	+	Silent	SNP	A	A	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	132418235	A	T	132418235	2	4	612	1	0	0	0	0	0	0	0	1	10587	126	5	5		5	NPHP3	3	132418235	Silent	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	7119440	132418235	65604195	13	35878											
MUC4	4585	broad.mit.edu	37	3	195511447	195511447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	195511447	G	A	195511447	3	1	612	1	0	0	0	0	1	0	0	0	9985	1145	40	1		1	MUC4	3	195511447	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	63093212	195511447	2510983	14	35879											
SDHA	6389	hgsc.bcm.edu	37	5	218487	218487	+	Missense_Mutation	SNP	G	G	A	rs187964306		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	218487	G	A	218487	3	1	612	1	0	0	0	0	1	0	0	0	13976	1203	42	2	19	2	SDHA	5	218487	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		218487	180696773	15	35880											
NSUN2	54888	hgsc.bcm.edu	37	5	6633071	6633071	+	Missense_Mutation	SNP	G	G	A	rs181415619		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	6633071	G	A	6633071	3	1	612	1	0	0	0	0	1	0	0	0	10685	1057	37	1	2357	1	NSUN2	5	6633071	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	6414584	6633071	174282189	16	35881											
ISL1	3670	broad.mit.edu	37	5	50687165	50687165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	50687165	G	T	50687165	3	4	612	1	0	0	0	0	1	0	0	0	7863	1116	39	4	841	4	ISL1	5	50687165	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	44054094	50687165	130228095	17	35882											
F12	2161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176833055	176833058	+	Frame_Shift_Del	DEL	AGTG	AGTG	-	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	AGTG	AGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	-	176833058	AGTG	-	176833055	7	5	612	1	0	1	0	1	0	0	0	0	5341	175	7	0	1772	0	F12	5	176833055	Frame_Shift_Del	DEL	AGTG	TCGA-DW-7963-01B-11D-A28G-10	126145890	176833055	4082205	18	35883											
PRDM13	59336	hgsc.bcm.edu	37	6	100061624	100061625	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	CCG	100061625	-	CCG	100061624	7	5	612	1	0	1	1	0	0	0	0	0	12464	506	18	0	1127	0	PRDM13	6	100061624	In_Frame_Ins	INS	-	TCGA-DW-7963-01B-11D-A28G-10		100061624	71053443	19	35884											
REV3L	5980	ucsc.edu;bcgsc.ca	37	6	111701285	111701285	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	111701285	C	A	111701285	4	1	612	1	0	0	0	0	0	1	0	0	13253	835	29	4	8126	4	REV3L	6	111701285	Nonsense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	11639661	111701285	59413782	20	35885											
SLC22A3	6581	hgsc.bcm.edu	37	6	160769796	160769796	+	Silent	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	160769796	C	T	160769796	2	4	612	1	0	0	0	0	0	0	0	1	14468	639	23	1		1	SLC22A3	6	160769796	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	49068511	160769796	10345271	21	35886											
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	170871004	G	A	170871004	2	1	612	1	0	0	0	0	0	0	0	1	15656	962	34	2		2	TBP	6	170871004	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	10101208	170871004	244063	22	35887											
TAF6	6878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99707631	99707631	+	Silent	SNP	G	G	A	rs148894017		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	99707631	G	A	99707631	2	1	612	1	0	0	0	0	0	0	0	1	15542	1136	40	1		1	TAF6	7	99707631	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		99707631	59431032	23	35888											
SSPO	23145	hgsc.bcm.edu	37	7	149487608	149487608	+	Splice_Site	SNP	T	T	G	rs1635798		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	G	149487608	T	G	149487608	5	3	612	1	0	0	0	0	0	0	1	0	15201	1739	60	5	5044	5	SSPO	7	149487608	Splice_Site	SNP	T	TCGA-DW-7963-01B-11D-A28G-10	49779977	149487608	9651055	24	35889											
GIMAP8	155038	broad.mit.edu	37	7	150174500	150174500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	150174500	G	T	150174500	3	4	612	1	0	0	0	0	1	0	0	0	6392	971	34	4	1644	4	GIMAP8	7	150174500	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	686892	150174500	8964163	25	35890											
HR	55806	hgsc.bcm.edu	37	8	21974513	21974513	+	Missense_Mutation	SNP	G	G	C	rs143782421		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	C	21974513	G	C	21974513	3	2	612	1	0	0	0	0	1	0	0	0	7354	1232	43	4	328	4	HR	8	21974513	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		21974513	124389509	26	35891			2	74		2	2	38	N	G_C	6.573472e-05
HR	55806	hgsc.bcm.edu	37	8	21974550	21974550	+	Silent	SNP	C	C	T	rs146855847		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	21974550	C	T	21974550	2	4	612	1	0	0	0	0	0	0	0	1	7354	465	17	2		2	HR	8	21974550	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	37	21974550	124389472	27	35892			2	74		2	2	38	N	G_C	6.573472e-05
STMN4	81551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27099960	27099960	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	27099960	G	A	27099960	2	1	612	1	0	0	0	0	0	0	0	1	15323	987	35	2		2	STMN4	8	27099960	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	5125410	27099960	119264062	28	35893											
C9orf156	51531	broad.mit.edu	37	9	100672508	100672508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	100672508	G	T	100672508	3	4	612	1	0	0	0	0	1	0	0	0	2467	1319	46	4	533	4	C9orf156	9	100672508	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		100672508	40540923	29	35894											
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117143567	117143567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	117143567	C	A	117143567	3	1	612	1	0	0	0	0	1	0	0	0	463	623	22	4	4356	4	AKNA	9	117143567	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	16471059	117143567	24069864	30	35895											
GAD2	2572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	26506915	26506915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	26506915	C	T	26506915	3	4	612	1	0	0	0	0	1	0	0	0	6187	710	25	2	291	2	GAD2	10	26506915	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		26506915	109027832	31	35896											
KIF5B	3799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32326205	32326205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	32326205	C	A	32326205	3	1	612	1	0	0	0	0	1	0	0	0	8313	507	18	4	2275	4	KIF5B	10	32326205	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	5819290	32326205	103208542	32	35897											
MUC2	4583	bcgsc.ca	37	11	1093061	1093061	+	Missense_Mutation	SNP	C	C	T	rs199518058		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	1093061	C	T	1093061	3	4	612	1	0	0	0	0	1	0	0	0	9982	594	21	2	4998	2	MUC2	11	1093061	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		1093061	133913455	33	35898											
MUC2	4583	broad.mit.edu	37	11	1093204	1093204	+	Missense_Mutation	SNP	C	C	A	rs56299570		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	1093204	C	A	1093204	3	1	612	1	0	0	0	0	1	0	0	0	9982	623	22	4	5141	4	MUC2	11	1093204	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	143	1093204	133913312	34	35899											
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	G	1253980	A	G	1253980	3	3	612	1	0	0	0	0	1	0	0	0	9986	275	10	3	2120	3	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	160776	1253980	133752536	35	35900											
STIM1	6786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4104179	4104179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	G	4104179	T	G	4104179	3	3	612	1	0	0	0	0	1	0	0	0	15295	1580	55	5	1239	5	STIM1	11	4104179	Missense_Mutation	SNP	T	TCGA-DW-7963-01B-11D-A28G-10	2850199	4104179	130902337	36	35901											
PRPH	5630	hgsc.bcm.edu	37	12	49689404	49689404	+	Missense_Mutation	SNP	G	G	T	rs58599399		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	49689404	G	T	49689404	3	4	612	1	0	0	0	0	1	0	0	0	12586	1058	37	4	423	4	PRPH	12	49689404	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		49689404	84162491	37	35902											
GNS	2799	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	65152878	65152878	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	65152878	A	T	65152878	3	4	612	1	0	0	0	0	1	0	0	0	6557	159	6	5	1535	5	GNS	12	65152878	Missense_Mutation	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	15463474	65152878	68699017	38	35903											
TMTC2	160335	broad.mit.edu	37	12	83251082	83251082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	C	83251082	A	C	83251082	3	2	612	1	0	0	0	0	1	0	0	0	16273	159	6	5	383	5	TMTC2	12	83251082	Missense_Mutation	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	18098204	83251082	50600813	39	35904											
CEP290	80184	broad.mit.edu;bcgsc.ca	37	12	88471486	88471486	+	Silent	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	88471486	G	T	88471486	2	4	612	1	0	0	0	0	0	0	0	1	3255	1335	47	4		4	CEP290	12	88471486	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	5220404	88471486	45380409	40	35905											
RXFP2	122042	bcgsc.ca	37	13	32352703	32352703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	32352703	G	T	32352703	3	4	612	1	0	0	0	0	1	0	0	0	13773	1319	46	4	802	4	RXFP2	13	32352703	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		32352703	82817175	41	35906											
ZIC5	85416	hgsc.bcm.edu	37	13	100623585	100623585	+	Silent	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	100623585	C	T	100623585	2	4	612	1	0	0	0	0	0	0	0	1	17694	639	23	1		1	ZIC5	13	100623585	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	68270882	100623585	14546293	42	35907											
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31576342	31576342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	31576342	G	A	31576342	3	1	612	1	0	0	0	0	1	0	0	0	7046	1290	45	2	1120	2	HECTD1	14	31576342	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		31576342	75773198	43	35908											
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90174782	90174782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	G	90174782	T	G	90174782	3	3	612	1	0	0	0	0	1	0	0	0	8316	1821	63	5	996	5	KIF7	15	90174782	Missense_Mutation	SNP	T	TCGA-DW-7963-01B-11D-A28G-10		90174782	12356610	44	35909											
USP31	57478	hgsc.bcm.edu	37	16	23160421	23160422	+	In_Frame_Ins	INS	-	-	GAGGAGGGC	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	GAGGAGGGC	23160422	-	GAGGAGGGC	23160421	7	5	612	1	0	1	1	0	0	0	0	0	17074	175	7	0	3951	0	USP31	16	23160421	In_Frame_Ins	INS	-	TCGA-DW-7963-01B-11D-A28G-10		23160421	67194332	45	35910											
TRIM72	493829	hgsc.bcm.edu	37	16	31226442	31226442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	31226442	G	A	31226442	3	1	612	1	0	0	0	0	1	0	0	0	16557	1087	38	1	385	1	TRIM72	16	31226442	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	8066021	31226442	59128311	46	35911											
ZDHHC7	55625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	85010785	85010785	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	85010785	G	A	85010785	2	1	612	1	0	0	0	0	0	0	0	1	17632	1165	41	2		2	ZDHHC7	16	85010785	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	53784343	85010785	5343968	47	35912											
FSCN2	25794	hgsc.bcm.edu	37	17	79504052	79504052	+	Silent	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	79504052	C	A	79504052	2	1	612	1	0	0	0	0	0	0	0	1	6075	726	26	4		4	FSCN2	17	79504052	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		79504052	1691158	48	35913											
ZNF567	163081	broad.mit.edu	37	19	37210687	37210687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	37210687	G	A	37210687	3	1	612	1	0	0	0	0	1	0	0	0	18010	1145	40	1	978	1	ZNF567	19	37210687	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		37210687	21918296	49	35914											
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31389169	31389169	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	C	31389169	G	C	31389169	3	2	612	1	0	0	0	0	1	0	0	0	4679	1183	41	4	2192	4	DNMT3B	20	31389169	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		31389169	31636351	50	35915											
SLC13A3	64849	broad.mit.edu	37	20	45194975	45194975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	45194975	G	A	45194975	3	1	612	1	0	0	0	0	1	0	0	0	14406	1203	42	2	433	2	SLC13A3	20	45194975	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	13805806	45194975	17830545	51	35916											
PREX1	57580	broad.mit.edu	37	20	47258948	47258948	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	A	47258948	G	A	47258948	2	1	612	1	0	0	0	0	0	0	0	1	12486	1252	44	2		2	PREX1	20	47258948	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	2063973	47258948	15766572	52	35917											
FAM65C	140876	broad.mit.edu	37	20	49208955	49208955	+	Missense_Mutation	SNP	C	C	G	rs77093450	alternate_allele	TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	G	49208955	C	G	49208955	3	3	612	1	0	0	0	0	1	0	0	0	5608	652	23	4	365	4	FAM65C	20	49208955	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	1950007	49208955	13816565	53	35918											
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37642372	37642372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	37642372	C	T	37642372	3	4	612	1	0	0	0	0	1	0	0	0	4710	507	18	2	5651	2	DOPEY2	21	37642372	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		37642372	10487523	54	35919											
KCNJ4	3761	broad.mit.edu	37	22	38822920	38822920	+	Silent	SNP	A	A	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	C	38822920	A	C	38822920	2	2	612	1	0	0	0	0	0	0	0	1	8060	30	2	5		5	KCNJ4	22	38822920	Silent	SNP	A	TCGA-DW-7963-01B-11D-A28G-10		38822920	12481646	55	35920											
ZBED4	9889	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50279802	50279802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	T	50279802	C	T	50279802	3	4	612	1	0	0	0	0	1	0	0	0	17532	536	19	1	2494	1	ZBED4	22	50279802	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	11456882	50279802	1024764	56	35921											
ZCCHC17	51538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31836979	31836979	+	Missense_Mutation	SNP	A	A	C	rs111803813	alternate_allele	TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	C	31836979	A	C	31836979	3	2	613	1	0	0	0	0	1	0	0	0	17597	275	10	5	691	5	ZCCHC17	1	31836979	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08		31836979	217413642	1	35922											
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120436921	120436921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	120436921	C	T	120436921	3	4	613	1	0	0	0	0	1	0	0	0	248	623	22	2	337	2	ADAM30	1	120436921	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	88599942	120436921	128813700	2	35923											
AIM2	9447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	159033450	159033450	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	159033450	C	G	159033450	3	3	613	1	0	0	0	0	1	0	0	0	432	912	32	4	208	4	AIM2	1	159033450	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	38596529	159033450	90217171	3	35924											
GLUL	2752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182356292	182356292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	182356292	A	T	182356292	3	4	613	1	0	0	0	0	1	0	0	0	6485	43	2	5	839	5	GLUL	1	182356292	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08	23322842	182356292	66894329	4	35925											
MTIF2	4528	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55473595	55473595	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	A	55473595	G	A	55473595	2	1	613	1	0	0	0	0	0	0	0	1	9941	1074	38	1		1	MTIF2	2	55473595	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08		55473595	187725778	5	35926											
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207171574	207171574	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	A	207171574	G	A	207171574	2	1	613	1	0	0	0	0	0	0	0	1	17611	1190	42	2		2	ZDBF2	2	207171574	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	151697979	207171574	36027799	6	35927											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215865517	215865517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	215865517	C	G	215865517	3	3	613	1	0	0	0	0	1	0	0	0	30	797	28	4	4824	4	ABCA12	2	215865517	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	8693943	215865517	27333856	7	35928											
NGLY1	55768	ucsc.edu	37	3	25770623	25770623	+	Splice_Site	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	25770623	C	T	25770623	5	4	613	1	0	0	0	0	0	0	1	0	10405	521	18	2	364	2	NGLY1	3	25770623	Splice_Site	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		25770623	172251807	8	35929											
TRIM71	131405	ucsc.edu	37	3	32932841	32932841	+	Silent	SNP	G	G	A	rs200564131		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	A	32932841	G	A	32932841	2	1	613	1	0	0	0	0	0	0	0	1	16556	1335	47	2		2	TRIM71	3	32932841	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	7162218	32932841	165089589	9	35930											
HTT	3064	hgsc.bcm.edu	37	4	3076696	3076696	+	Silent	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	3076696	T	G	3076696	2	3	613	1	0	0	0	0	0	0	0	1	7464	1538	54	5		5	HTT	4	3076696	Silent	SNP	T	TCGA-DZ-6131-01A-11D-1961-08		3076696	188077580	10	35931											
PTPN13	5783	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87691259	87691259	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	87691259	C	T	87691259	2	4	613	1	0	0	0	0	0	0	0	1	12793	813	29	2		2	PTPN13	4	87691259	Silent	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	84614563	87691259	103463017	11	35932											
DAPP1	27071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100787246	100787246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	C	100787246	G	C	100787246	3	2	613	1	0	0	0	0	1	0	0	0	4241	1290	45	4	772	4	DAPP1	4	100787246	Missense_Mutation	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	13095987	100787246	90367030	12	35933											
LRBA	987	hgsc.bcm.edu	37	4	151231474	151231474	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	C	151231474	G	C	151231474	3	2	613	1	0	0	0	0	1	0	0	0	8938	1319	46	4	826	4	LRBA	4	151231474	Missense_Mutation	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	50444228	151231474	39922802	13	35934											
GALNT7	51809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	174225146	174225146	+	Splice_Site	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	A	174225146	G	A	174225146	5	1	613	1	0	0	0	0	0	0	1	0	6225	956	33	2	1296	2	GALNT7	4	174225146	Splice_Site	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	22993672	174225146	16929130	14	35935											
ARSK	153642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94922371	94922371	+	Missense_Mutation	SNP	A	A	G	rs201849642		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	94922371	A	G	94922371	3	3	613	1	0	0	0	0	1	0	0	0	996	15	1	3	823	3	ARSK	5	94922371	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08		94922371	85992889	15	35936											
C1QTNF2	114898	broad.mit.edu;bcgsc.ca	37	5	159781881	159781881	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	A	159781881	G	A	159781881	2	1	613	1	0	0	0	0	0	0	0	1	1965	1190	42	2		2	C1QTNF2	5	159781881	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	64859510	159781881	21133379	16	35937											
DNAH11	8701	ucsc.edu	37	7	21856097	21856097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	A	21856097	C	A	21856097	3	1	613	1	0	0	0	0	1	0	0	0	4601	564	20	4	10621	4	DNAH11	7	21856097	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		21856097	137282566	17	35938											
DOCK4	9732	broad.mit.edu;bcgsc.ca	37	7	111368620	111368620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	111368620	C	T	111368620	3	4	613	1	0	0	0	0	1	0	0	0	4691	835	29	2	293	2	DOCK4	7	111368620	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	89512523	111368620	47770043	18	35939											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	30694449	30694449	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	C	30694449	T	C	30694449	2	2	613	1	0	0	0	0	0	0	0	1	15791	1490	52	3		3	TEX15	8	30694449	Silent	SNP	T	TCGA-DZ-6131-01A-11D-1961-08		30694449	115669573	19	35940											
ZFAT	57623	broad.mit.edu	37	8	135524765	135524765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	C	135524765	T	C	135524765	3	2	613	1	0	0	0	0	1	0	0	0	17644	1580	55	3	429	3	ZFAT	8	135524765	Missense_Mutation	SNP	T	TCGA-DZ-6131-01A-11D-1961-08	104830316	135524765	10839257	20	35941											
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu	37	9	114454268	114454270	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	-	114454270	CTC	-	114454268	7	5	613	1	0	1	0	1	0	0	0	0	2502	913	32	0	545	0	C9orf84	9	114454268	In_Frame_Del	DEL	CTC	TCGA-DZ-6131-01A-11D-1961-08		114454268	26759163	21	35942											
WDR37	22884	bcgsc.ca	37	10	1170912	1170915	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	TGTT	TGTT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	-	1170915	TGTT	-	1170912	7	5	613	1	0	1	0	1	0	0	0	0	17303	1580	55	0	1347	0	WDR37	10	1170912	Frame_Shift_Del	DEL	TGTT	TCGA-DZ-6131-01A-11D-1961-08		1170912	134363835	22	35943											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1099777	1099777	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	C	1099777	T	C	1099777	2	2	613	1	0	0	0	0	0	0	0	1	9982	1567	55	3		3	MUC2	11	1099777	Silent	SNP	T	TCGA-DZ-6131-01A-11D-1961-08		1099777	133906739	23	35944											
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	9000291	9000291	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	9000291	C	T	9000291	2	4	613	1	0	0	0	0	0	0	0	1	5	784	28	2		2	A2ML1	12	9000291	Silent	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		9000291	124851604	24	35945											
TMEM5	10329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64174892	64174892	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	64174892	T	G	64174892	4	3	613	1	0	0	0	0	0	1	0	0	16186	1764	61	5	269	5	TMEM5	12	64174892	Nonsense_Mutation	SNP	T	TCGA-DZ-6131-01A-11D-1961-08	55174601	64174892	69677003	25	35946											
PPP1R12A	4659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	80203769	80203769	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	80203769	T	G	80203769	3	3	613	1	0	0	0	0	1	0	0	0	12364	1493	52	5	1895	5	PPP1R12A	12	80203769	Missense_Mutation	SNP	T	TCGA-DZ-6131-01A-11D-1961-08	16028877	80203769	53648126	26	35947											
P2RX7	5027	hgsc.bcm.edu	37	12	121622232	121622232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	121622232	A	G	121622232	3	3	613	1	0	0	0	0	1	0	0	0	11352	333	12	3	1465	3	P2RX7	12	121622232	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08	41418463	121622232	12229663	27	35948											
PCDH8	5100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	53422307	53422307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	53422307	C	T	53422307	3	4	613	1	0	0	0	0	1	0	0	0	11524	652	23	1	2959	1	PCDH8	13	53422307	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		53422307	61747571	28	35949											
CCDC88C	440193	hgsc.bcm.edu	37	14	91776235	91776235	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	91776235	C	G	91776235	2	3	613	1	0	0	0	0	0	0	0	1	2867	697	25	4		4	CCDC88C	14	91776235	Silent	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		91776235	15573305	29	35950											
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	23890238	23890238	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	23890238	C	G	23890238	3	3	613	1	0	0	0	0	1	0	0	0	9196	680	24	4	1101	4	MAGEL2	15	23890238	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		23890238	78641154	30	35951											
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4700468	4700468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	4700468	G	T	4700468	3	4	613	1	0	0	0	0	1	0	0	0	9566	1203	42	4	197	4	MGRN1	16	4700468	Missense_Mutation	SNP	G	TCGA-DZ-6131-01A-11D-1961-08		4700468	85654285	31	35952											
CMTM1	113540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66612903	66612903	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	A	66612903	G	A	66612903	2	1	613	1	0	0	0	0	0	0	0	1	3584	1285	45	2		2	CMTM1	16	66612903	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	61912435	66612903	23741850	32	35953											
TTLL6	284076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46862380	46862380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	46862380	T	G	46862380	3	3	613	1	0	0	0	0	1	0	0	0	16743	1812	63	5	742	5	TTLL6	17	46862380	Missense_Mutation	SNP	T	TCGA-DZ-6131-01A-11D-1961-08		46862380	34332830	33	35954											
EPX	8288	broad.mit.edu;bcgsc.ca	37	17	56274480	56274480	+	Missense_Mutation	SNP	C	C	T	rs143329228		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	56274480	C	T	56274480	3	4	613	1	0	0	0	0	1	0	0	0	5202	643	23	1	1008	1	EPX	17	56274480	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	9412100	56274480	24920730	34	35955											
C17orf62	79415	ucsc.edu	37	17	80405455	80405455	+	Splice_Site	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	80405455	C	T	80405455	5	4	613	1	0	0	0	0	0	0	1	0	1872	521	18	2	455	2	C17orf62	17	80405455	Splice_Site	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	24130975	80405455	789755	35	35956											
SIRPG	55423	ucsc.edu	37	20	1629910	1629910	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	1629910	C	G	1629910	3	3	613	1	0	0	0	0	1	0	0	0	14349	739	26	4	961	4	SIRPG	20	1629910	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		1629910	61395610	36	35957											
COL20A1	57642	hgsc.bcm.edu	37	20	61944243	61944243	+	Missense_Mutation	SNP	A	A	G	rs143321165		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	61944243	A	G	61944243	3	3	613	1	0	0	0	0	1	0	0	0	3681	391	14	3	2091	3	COL20A1	20	61944243	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08	60314333	61944243	1081277	37	35958											
GART	2618	broad.mit.edu	37	21	34877874	34877874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	C	34877874	A	C	34877874	3	2	613	1	0	0	0	0	1	0	0	0	6250	159	6	5	325	5	GART	21	34877874	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08		34877874	13252021	38	35959											
KRTAP10-10	353333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46057373	46057373	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	T	46057373	C	T	46057373	2	4	613	1	0	0	0	0	0	0	0	1	8513	718	25	2		2	KRTAP10-10	21	46057373	Silent	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	11179499	46057373	2072522	39	35960											
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	34961454	34961454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	A	34961454	G	A	34961454	3	1	613	1	0	0	0	0	1	0	0	0	5577	1116	39	1	508	1	FAM47B	23	34961454	Missense_Mutation	SNP	G	TCGA-DZ-6131-01A-11D-1961-08		34961454	120309106	40	35961											
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53268433	53268433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	G	53268433	C	G	53268433	3	3	613	1	0	0	0	0	1	0	0	0	7825	565	20	4	1427	4	IQSEC2	23	53268433	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	18306979	53268433	102002127	41	35962											
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	2160390	C	G	2160390	3	3	614	1	0	0	0	0	1	0	0	0	14370	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		2160390	247090231	1	35963											
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9097752	9097752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	9097752	T	C	9097752	3	2	614	1	0	0	0	0	1	0	0	0	14561	1667	58	3	110	3	SLC2A5	1	9097752	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	6937362	9097752	240152869	2	35964											
ALPL	249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21902288	21902288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	21902288	G	A	21902288	3	1	614	1	0	0	0	0	1	0	0	0	547	1175	41	2	1094	2	ALPL	1	21902288	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	12804536	21902288	227348333	3	35965											
WASF2	10163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27739179	27739179	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	27739179	A	G	27739179	2	3	614	1	0	0	0	0	0	0	0	1	17265	157	6	3		3	WASF2	1	27739179	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	5836891	27739179	221511442	4	35966											
MACF1	23499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39888512	39888512	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	39888512	C	T	39888512	2	4	614	1	0	0	0	0	0	0	0	1	9151	581	21	2		2	MACF1	1	39888512	Silent	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	12149333	39888512	209362109	5	35967											
TESK2	10420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45813333	45813333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	45813333	G	A	45813333	3	1	614	1	0	0	0	0	1	0	0	0	15780	1174	41	2	1079	2	TESK2	1	45813333	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	5924821	45813333	203437288	6	35968											
TMEM69	51249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46159260	46159260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	46159260	A	G	46159260	3	3	614	1	0	0	0	0	1	0	0	0	16210	333	12	3	433	3	TMEM69	1	46159260	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	345927	46159260	203091361	7	35969											
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52704507	52704507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	52704507	A	G	52704507	3	3	614	1	0	0	0	0	1	0	0	0	17683	449	16	3	1424	3	ZFYVE9	1	52704507	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	6545247	52704507	196546114	8	35970											
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53262039	53262039	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	53262039	T	C	53262039	2	2	614	1	0	0	0	0	0	0	0	1	18265	1509	53	3		3	ZYG11B	1	53262039	Silent	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	557532	53262039	195988582	9	35971											
ODF2L	57489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	86851227	86851227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	86851227	G	A	86851227	3	1	614	1	0	0	0	0	1	0	0	0	10835	1029	36	2	1990	2	ODF2L	1	86851227	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	33589188	86851227	162399394	10	35972											
ABCA4	24	broad.mit.edu	37	1	94522330	94522330	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	94522330	A	G	94522330	2	3	614	1	0	0	0	0	0	0	0	1	34	69	3	3		3	ABCA4	1	94522330	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	7671103	94522330	154728291	11	35973											
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94639942	94639942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	94639942	A	G	94639942	3	3	614	1	0	0	0	0	1	0	0	0	878	420	15	3	520	3	ARHGAP29	1	94639942	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	117612	94639942	154610679	12	35974											
GSTM1	2944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110233169	110233169	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	110233169	T	G	110233169	3	3	614	1	0	0	0	0	1	0	0	0	6844	1609	56	5	576	5	GSTM1	1	110233169	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	15593227	110233169	139017452	13	35975											
INSRR	3645	ucsc.edu	37	1	156821562	156821562	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	156821562	G	A	156821562	2	1	614	1	0	0	0	0	0	0	0	1	7781	1079	38	1		1	INSRR	1	156821562	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	46588393	156821562	92429059	14	35976											
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	160105252	160105252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	160105252	G	A	160105252	3	1	614	1	0	0	0	0	1	0	0	0	1129	1232	43	2	2206	2	ATP1A2	1	160105252	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	3283690	160105252	89145369	15	35977											
USP21	27005	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161134645	161134645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	161134645	T	A	161134645	3	1	614	1	0	0	0	0	1	0	0	0	17065	1551	54	5	1443	5	USP21	1	161134645	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	1029393	161134645	88115976	16	35978											
NME7	29922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169102046	169102046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	169102046	A	G	169102046	3	3	614	1	0	0	0	0	1	0	0	0	10503	72	3	3	26	3	NME7	1	169102046	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	7967401	169102046	80148575	17	35979											
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203036824	203036824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	203036824	A	G	203036824	3	3	614	1	0	0	0	0	1	0	0	0	12319	57	2	3	1584	3	PPFIA4	1	203036824	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	33934778	203036824	46213797	18	35980											
PIGR	5284	ucsc.edu	37	1	207106513	207106513	+	Splice_Site	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	207106513	T	C	207106513	5	2	614	1	0	0	0	0	0	0	1	0	11904	1594	55	3	610	3	PIGR	1	207106513	Splice_Site	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	4069689	207106513	42144108	19	35981											
ANAPC1	64682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	112608404	112608404	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	112608404	A	G	112608404	2	3	614	1	0	0	0	0	0	0	0	1	598	214	8	3		3	ANAPC1	2	112608404	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08		112608404	130590969	20	35982											
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141762906	141762906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	141762906	G	T	141762906	3	4	614	1	0	0	0	0	1	0	0	0	8962	1377	48	4	11606	4	LRP1B	2	141762906	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	29154502	141762906	101436467	21	35983											
FAP	2191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163074641	163074641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	163074641	A	T	163074641	3	4	614	1	0	0	0	0	1	0	0	0	5680	72	3	5	1737	5	FAP	2	163074641	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	21311735	163074641	80124732	22	35984											
TNS1	7145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218678433	218678433	+	Silent	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	218678433	T	A	218678433	2	1	614	1	0	0	0	0	0	0	0	1	16355	1799	63	5		5	TNS1	2	218678433	Silent	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	55603792	218678433	24520940	23	35985											
FAM134A	79137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220047044	220047044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	220047044	T	C	220047044	3	2	614	1	0	0	0	0	1	0	0	0	5449	1551	54	3	1359	3	FAM134A	2	220047044	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	1368611	220047044	23152329	24	35986											
GMPPA	29926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220370077	220370077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	220370077	T	C	220370077	3	2	614	1	0	0	0	0	1	0	0	0	6501	1667	58	3	774	3	GMPPA	2	220370077	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	323033	220370077	22829296	25	35987											
CAMK1	8536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9801228	9801228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	9801228	T	C	9801228	3	2	614	1	0	0	0	0	1	0	0	0	2598	1406	49	3	268	3	CAMK1	3	9801228	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		9801228	188221202	26	35988											
GPD1L	23171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	32169609	32169609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	32169609	A	C	32169609	3	2	614	1	0	0	0	0	1	0	0	0	6612	14	1	5	95	5	GPD1L	3	32169609	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	22368381	32169609	165852821	27	35989											
PLCD1	5333	broad.mit.edu;bcgsc.ca	37	3	38051199	38051201	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	38051201	TCG	-	38051199	7	5	614	1	0	1	0	1	0	0	0	0	12038	1551	54	0	907	0	PLCD1	3	38051199	In_Frame_Del	DEL	TCG	TCGA-DZ-6132-01A-11D-1961-08	5881590	38051199	159971231	28	35990											
RPL24	6152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	101401697	101401698	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	101401698	-	A	101401697	7	5	614	1	0	1	1	0	0	0	0	0	13585	1638	57	0	238	0	RPL24	3	101401697	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	63350498	101401697	96620733	29	35991											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108107907	108107918	+	In_Frame_Del	DEL	TTCCAGTTCACG	TTCCAGTTCACG	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	TTCCAGTTCACG	TTCCAGTTCACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	108107918	TTCCAGTTCACG	-	108107907	7	5	614	1	0	1	0	1	0	0	0	0	10041	1606	56	0	351	0	MYH15	3	108107907	In_Frame_Del	DEL	TTCCAGTTCACG	TCGA-DZ-6132-01A-11D-1961-08	6706210	108107907	89914523	30	35992											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121260288	121260288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	121260288	G	A	121260288	3	1	614	1	0	0	0	0	1	0	0	0	12215	1029	36	2	7502	2	POLQ	3	121260288	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	13152381	121260288	76762142	31	35993											
SEC22A	26984	broad.mit.edu	37	3	122978380	122978380	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	122978380	G	-	122978380	7	5	614	1	0	1	0	1	0	0	0	0	14001	1290	45	0	685	0	SEC22A	3	122978380	Frame_Shift_Del	DEL	G	TCGA-DZ-6132-01A-11D-1961-08	1718092	122978380	75044050	32	35994											
DNAJC13	23317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132207161	132207161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	132207161	C	A	132207161	3	1	614	1	0	0	0	0	1	0	0	0	4634	681	24	4	3401	4	DNAJC13	3	132207161	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	9228781	132207161	65815269	33	35995											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142284995	142284995	+	Missense_Mutation	SNP	C	C	T	rs200407265	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	142284995	C	T	142284995	3	4	614	1	0	0	0	0	1	0	0	0	1204	565	20	2	7854	2	ATR	3	142284995	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	10077834	142284995	55737435	34	35996											
SLC7A14	57709	broad.mit.edu;bcgsc.ca	37	3	170201153	170201154	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	170201154	-	A	170201153	7	5	614	1	0	1	1	0	0	0	0	0	14709	1165	41	0	1262	0	SLC7A14	3	170201153	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	27916158	170201153	27821277	35	35997											
WDR1	9948	ucsc.edu	37	4	10090323	10090323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	10090323	C	A	10090323	3	1	614	1	0	0	0	0	1	0	0	0	17284	594	21	4	1259	4	WDR1	4	10090323	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		10090323	181063953	36	35998											
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40122682	40122682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	40122682	C	G	40122682	3	3	614	1	0	0	0	0	1	0	0	0	10117	594	21	4	2977	4	N4BP2	4	40122682	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	30032359	40122682	151031594	37	35999											
SCD5	79966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83557889	83557889	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	83557889	G	C	83557889	2	2	614	1	0	0	0	0	0	0	0	1	13900	987	35	4		4	SCD5	4	83557889	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	43435207	83557889	107596387	38	36000											
DMP1	1758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88584223	88584223	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	88584223	G	A	88584223	2	1	614	1	0	0	0	0	0	0	0	1	4585	991	35	2		2	DMP1	4	88584223	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	5026334	88584223	102570053	39	36001											
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89034494	89034494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	89034494	G	C	89034494	3	2	614	1	0	0	0	0	1	0	0	0	69	1281	45	4	844	4	ABCG2	4	89034494	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	450271	89034494	102119782	40	36002											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	114195785	114195785	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	114195785	G	-	114195785	7	5	614	1	0	1	0	1	0	0	0	0	621	971	34	0	1746	0	ANK2	4	114195785	Frame_Shift_Del	DEL	G	TCGA-DZ-6132-01A-11D-1961-08	25161291	114195785	76958491	41	36003											
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	154557454	154557454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	154557454	C	T	154557454	3	4	614	1	0	0	0	0	1	0	0	0	8208	637	22	2	4697	2	KIAA0922	4	154557454	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	40361669	154557454	36596822	42	36004											
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159756556	159756556	+	Splice_Site	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	159756556	G	A	159756556	5	1	614	1	0	0	0	0	0	0	1	0	5983	985	34	2	681	2	FNIP2	4	159756556	Splice_Site	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	5199102	159756556	31397720	43	36005											
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38489203	38489203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	38489203	G	A	38489203	3	1	614	1	0	0	0	0	1	0	0	0	8787	942	33	2	1001	2	LIFR	5	38489203	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08		38489203	142426057	44	36006											
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	70837317	70837317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	70837317	A	T	70837317	3	4	614	1	0	0	0	0	1	0	0	0	1395	333	12	5	6173	5	BDP1	5	70837317	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	32348114	70837317	110077943	45	36007											
PCDHB6	56130	ucsc.edu	37	5	140531445	140531445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	140531445	C	T	140531445	3	4	614	1	0	0	0	0	1	0	0	0	11553	855	30	2	1609	2	PCDHB6	5	140531445	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	69694128	140531445	40383815	46	36008											
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140864817	140864817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	140864817	A	G	140864817	3	3	614	1	0	0	0	0	1	0	0	0	11577	391	14	3	79	3	PCDHGC4	5	140864817	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	333372	140864817	40050443	47	36009											
SYNPO	11346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150027927	150027927	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	150027927	A	-	150027927	7	5	614	1	0	1	0	1	0	0	0	0	15468	349	13	0	828	0	SYNPO	5	150027927	Frame_Shift_Del	DEL	A	TCGA-DZ-6132-01A-11D-1961-08	9163110	150027927	30887333	48	36010											
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29079815	29079815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	29079815	A	G	29079815	3	3	614	1	0	0	0	0	1	0	0	0	11011	217	8	3	150	3	OR2J3	6	29079815	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08		29079815	142035252	49	36011											
ZBTB22	9278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33284668	33284668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	33284668	C	T	33284668	3	4	614	1	0	0	0	0	1	0	0	0	17542	565	20	2	1882	2	ZBTB22	6	33284668	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	4204853	33284668	137830399	50	36012											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42559909	42559909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	42559909	C	G	42559909	3	3	614	1	0	0	0	0	1	0	0	0	16914	565	20	4	369	4	UBR2	6	42559909	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	9275241	42559909	128555158	51	36013											
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44222677	44222677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	44222677	G	C	44222677	3	2	614	1	0	0	0	0	1	0	0	0	14589	932	33	4	237	4	SLC35B2	6	44222677	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	1662768	44222677	126892390	52	36014											
TTYH3	80727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2691878	2691878	+	Splice_Site	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	2691878	T	C	2691878	5	2	614	1	0	0	0	0	0	0	1	0	16753	1710	59	3	959	3	TTYH3	7	2691878	Splice_Site	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		2691878	156446785	53	36015											
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23313792	23313792	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	23313792	C	G	23313792	3	3	614	1	0	0	0	0	1	0	0	0	6627	506	18	4	1710	4	GPNMB	7	23313792	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	20621914	23313792	135824871	54	36016											
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	65705725	65705725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	65705725	C	A	65705725	3	1	614	1	0	0	0	0	1	0	0	0	16439	855	30	4	315	4	TPST1	7	65705725	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	42391933	65705725	93432938	55	36017											
ELN	2006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73474279	73474279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	73474279	C	T	73474279	3	4	614	1	0	0	0	0	1	0	0	0	5073	681	24	2	1583	2	ELN	7	73474279	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	7768554	73474279	85664384	56	36018											
MCM7	4176	ucsc.edu;bcgsc.ca	37	7	99690937	99690937	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	99690937	C	A	99690937	4	1	614	1	0	0	0	0	0	1	0	0	9399	690	24	4	231	4	MCM7	7	99690937	Nonsense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	26216658	99690937	59447726	57	36019											
TRIM56	81844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100732355	100732355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	100732355	T	C	100732355	3	2	614	1	0	0	0	0	1	0	0	0	16542	1551	54	3	1764	3	TRIM56	7	100732355	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	1041418	100732355	58406308	58	36020											
DLD	1738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107542828	107542828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	107542828	T	C	107542828	3	2	614	1	0	0	0	0	1	0	0	0	4553	1493	52	3	271	3	DLD	7	107542828	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	6810473	107542828	51595835	59	36021											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116417457	116417457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	116417457	G	A	116417457	3	1	614	1	0	0	0	0	1	0	0	0	9492	1377	48	2	3386	2	MET	7	116417457	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	8874629	116417457	42721206	60	36022											
DLGAP2	9228	broad.mit.edu	37	8	1497740	1497740	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	1497740	T	A	1497740	3	1	614	1	0	0	0	0	1	0	0	0	4562	1580	55	5	883	5	DLGAP2	8	1497740	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		1497740	144866282	61	36023											
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6302563	6302563	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	6302563	T	C	6302563	2	2	614	1	0	0	0	0	0	0	0	1	9405	1538	54	3		3	MCPH1	8	6302563	Silent	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	4804823	6302563	140061459	62	36024											
TM2D2	83877	ucsc.edu	37	8	38853742	38853742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	38853742	A	T	38853742	3	4	614	1	0	0	0	0	1	0	0	0	15976	188	7	5	541	5	TM2D2	8	38853742	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	32551179	38853742	107510280	63	36025											
HGSNAT	138050	hgsc.bcm.edu;broad.mit.edu	37	8	43002092	43002092	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	43002092	C	G	43002092	3	3	614	1	0	0	0	0	1	0	0	0	7095	579	20	4	126	4	HGSNAT	8	43002092	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	4148350	43002092	103361930	64	36026											
COL14A1	7373	broad.mit.edu	37	8	121170484	121170484	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	121170484	A	G	121170484	2	3	614	1	0	0	0	0	0	0	0	1	3673	202	7	3		3	COL14A1	8	121170484	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	78168392	121170484	25193538	65	36027											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	131921969	131921969	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	131921969	G	C	131921969	3	2	614	1	0	0	0	0	1	0	0	0	300	942	33	4	2182	4	ADCY8	8	131921969	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	10751485	131921969	14442053	66	36028											
NAPRT1	93100	broad.mit.edu	37	8	144659504	144659504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	144659504	A	G	144659504	3	3	614	1	0	0	0	0	1	0	0	0	10172	217	8	3	1153	3	NAPRT1	8	144659504	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	12737535	144659504	1704518	67	36029											
DENND4C	55667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19369966	19369966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	19369966	C	T	19369966	3	4	614	1	0	0	0	0	1	0	0	0	4437	739	26	2	4903	2	DENND4C	9	19369966	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		19369966	121843465	68	36030											
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	27197591	27197591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	27197591	A	G	27197591	3	3	614	1	0	0	0	0	1	0	0	0	15763	420	15	3	1949	3	TEK	9	27197591	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	7827625	27197591	114015840	69	36031											
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88943326	88943326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	88943326	C	G	88943326	3	3	614	1	0	0	0	0	1	0	0	0	17604	826	29	4	3018	4	ZCCHC6	9	88943326	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	61745735	88943326	52270105	70	36032											
ZFP37	7539	broad.mit.edu;bcgsc.ca	37	9	115806495	115806495	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	115806495	G	-	115806495	7	5	614	1	0	1	0	1	0	0	0	0	17660	1029	36	0	1493	0	ZFP37	9	115806495	Frame_Shift_Del	DEL	G	TCGA-DZ-6132-01A-11D-1961-08	26863169	115806495	25406936	71	36033											
OR1N1	138883	bcgsc.ca	37	9	125288660	125288670	+	Frame_Shift_Del	DEL	GACTGAAGAGC	GACTGAAGAGC	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	GACTGAAGAGC	GACTGAAGAGC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	125288670	GACTGAAGAGC	-	125288660	7	5	614	1	0	1	0	1	0	0	0	0	10976	1290	45	0	26	0	OR1N1	9	125288660	Frame_Shift_Del	DEL	GACTGAAGAGC	TCGA-DZ-6132-01A-11D-1961-08	9482165	125288660	15924771	72	36034											
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131864688	131864688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	131864688	G	T	131864688	3	4	614	1	0	0	0	0	1	0	0	0	3849	1368	48	4	1299	4	CRAT	9	131864688	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	6576028	131864688	9348743	73	36035											
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24908604	24908604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	24908604	T	-	24908604	7	5	614	1	0	1	0	1	0	0	0	0	871	1722	60	0	3728	0	ARHGAP21	10	24908604	Frame_Shift_Del	DEL	T	TCGA-DZ-6132-01A-11D-1961-08		24908604	110626143	74	36036											
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70645179	70645179	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	70645179	T	-	70645179	7	5	614	1	0	1	0	1	0	0	0	0	15331	1609	56	0	1637	0	STOX1	10	70645179	Frame_Shift_Del	DEL	T	TCGA-DZ-6132-01A-11D-1961-08	45736575	70645179	64889568	75	36037											
LRIT1	26103	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85997318	85997318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	85997318	C	T	85997318	3	4	614	1	0	0	0	0	1	0	0	0	8954	623	22	2	1636	2	LRIT1	10	85997318	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	15352139	85997318	49537429	76	36038											
LRRC27	80313	broad.mit.edu;bcgsc.ca	37	10	134144951	134144952	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	134144952	-	C	134144951	7	5	614	1	0	1	1	0	0	0	0	0	8988	1102	38	0		0	LRRC27	10	134144951	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	48147633	134144951	1389796	77	36039											
ZNF143	7702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9519250	9519250	+	Silent	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	9519250	T	G	9519250	2	3	614	1	0	0	0	0	0	0	0	1	17744	1538	54	5		5	ZNF143	11	9519250	Silent	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		9519250	125487266	78	36040											
RAPSN	5913	ucsc.edu;bcgsc.ca	37	11	47469615	47469615	+	Nonsense_Mutation	SNP	C	C	A	rs200550567	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	47469615	C	A	47469615	4	1	614	1	0	0	0	0	0	1	0	0	13064	893	31	4	986	4	RAPSN	11	47469615	Nonsense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	37950365	47469615	87536901	79	36041											
GIF	2694	hgsc.bcm.edu;bcgsc.ca	37	11	59610049	59610049	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	59610049	G	C	59610049	3	2	614	1	0	0	0	0	1	0	0	0	6383	1136	40	4	899	4	GIF	11	59610049	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	12140434	59610049	75396467	80	36042	467	2									
GIF	2694	broad.mit.edu;bcgsc.ca	37	11	59610051	59610052	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	59610052	-	G	59610051	7	5	614	1	0	1	1	0	0	0	0	0	6383	1812	63	0	901	0	GIF	11	59610051	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	2	59610051	75396465	81	36043	467	2									
FADS1	3992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61578255	61578255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	61578255	A	C	61578255	3	2	614	1	0	0	0	0	1	0	0	0	5369	72	3	5	654	5	FADS1	11	61578255	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	1968204	61578255	73428261	82	36044											
SIDT2	51092	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117052793	117052793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	117052793	G	A	117052793	3	1	614	1	0	0	0	0	1	0	0	0	14316	971	34	2	502	2	SIDT2	11	117052793	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	55474538	117052793	17953723	83	36045											
ARHGEF12	23365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120302543	120302543	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	120302543	A	T	120302543	3	4	614	1	0	0	0	0	1	0	0	0	897	43	2	5	889	5	ARHGEF12	11	120302543	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	3249750	120302543	14703973	84	36046											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2910312	2910312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	2910312	G	T	2910312	3	4	614	1	0	0	0	0	1	0	0	0	5917	991	35	4	1096	4	FKBP4	12	2910312	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08		2910312	130941583	85	36047											
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	10780290	10780290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	10780290	G	C	10780290	3	2	614	1	0	0	0	0	1	0	0	0	15371	942	33	4	621	4	STYK1	12	10780290	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	7869978	10780290	123071605	86	36048											
BCL2L14	79370	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12232370	12232370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	12232370	C	T	12232370	3	4	614	1	0	0	0	0	1	0	0	0	1372	838	29	2	133	2	BCL2L14	12	12232370	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	1452080	12232370	121619525	87	36049											
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	19506893	19506893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	19506893	A	G	19506893	3	3	614	1	0	0	0	0	1	0	0	0	12066	449	16	3	2993	3	PLEKHA5	12	19506893	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	7274523	19506893	114345002	88	36050											
SLC38A4	55089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	47178364	47178364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	47178364	T	A	47178364	3	1	614	1	0	0	0	0	1	0	0	0	14619	1493	52	5	1233	5	SLC38A4	12	47178364	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	27671471	47178364	86673531	89	36051											
EIF4B	1975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53416313	53416313	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	53416313	G	C	53416313	3	2	614	1	0	0	0	0	1	0	0	0	5029	1116	39	4	591	4	EIF4B	12	53416313	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	6237949	53416313	80435582	90	36052											
RAB5B	5869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56385887	56385887	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	56385887	A	T	56385887	3	4	614	1	0	0	0	0	1	0	0	0	12962	72	3	5	557	5	RAB5B	12	56385887	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	2969574	56385887	77466008	91	36053											
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	66765625	66765625	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	66765625	A	-	66765625	7	5	614	1	0	1	0	1	0	0	0	0	6794	246	9	0	537	0	GRIP1	12	66765625	Frame_Shift_Del	DEL	A	TCGA-DZ-6132-01A-11D-1961-08	10379738	66765625	67086270	92	36054											
FGD6	55785	broad.mit.edu	37	12	95603626	95603626	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	95603626	A	G	95603626	2	3	614	1	0	0	0	0	0	0	0	1	5844	291	11	3		3	FGD6	12	95603626	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	28838001	95603626	38248269	93	36055											
CCDC38	120935	hgsc.bcm.edu;broad.mit.edu	37	12	96273432	96273432	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	96273432	G	A	96273432	4	1	614	1	0	0	0	0	0	1	0	0	2812	1386	48	2	579	2	CCDC38	12	96273432	Nonsense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	669806	96273432	37578463	94	36056											
TRPC4	7223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	38237841	38237841	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	38237841	G	T	38237841	4	4	614	1	0	0	0	0	0	1	0	0	16592	1294	45	4	1572	4	TRPC4	13	38237841	Nonsense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08		38237841	76932037	95	36057											
RCBTB1	55213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	50115836	50115836	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	50115836	C	-	50115836	7	5	614	1	0	1	0	1	0	0	0	0	13184	884	31	0	307	0	RCBTB1	13	50115836	Frame_Shift_Del	DEL	C	TCGA-DZ-6132-01A-11D-1961-08	11877995	50115836	65054042	96	36058	468	2									
RCBTB1	55213	bcgsc.ca	37	13	50115837	50115837	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	50115837	G	A	50115837	2	1	614	1	0	0	0	0	0	0	0	1	13184	1045	37	1		1	RCBTB1	13	50115837	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	1	50115837	65054041	97	36059	468	2									
GPR180	160897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	95271585	95271585	+	Splice_Site	SNP	G	G	A	rs138676753	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	95271585	G	A	95271585	5	1	614	1	0	0	0	0	0	0	1	0	6683	1275	44	2	701	2	GPR180	13	95271585	Splice_Site	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	45155748	95271585	19898293	98	36060											
KTN1	3895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	56079010	56079010	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	56079010	C	A	56079010	2	1	614	1	0	0	0	0	0	0	0	1	8592	876	31	4		4	KTN1	14	56079010	Silent	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		56079010	51270530	99	36061											
ANPEP	290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90349567	90349567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	90349567	T	C	90349567	3	2	614	1	0	0	0	0	1	0	0	0	710	1435	50	3	2735	3	ANPEP	15	90349567	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		90349567	12181825	100	36062											
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91769497	91769497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	91769497	G	C	91769497	3	2	614	1	0	0	0	0	1	0	0	0	15430	1174	41	4	6	4	SV2B	15	91769497	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	1419930	91769497	10761895	101	36063											
LMF1	64788	hgsc.bcm.edu	37	16	1004476	1004476	+	Missense_Mutation	SNP	C	C	G	rs115313199		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	1004476	C	G	1004476	3	3	614	1	0	0	0	0	1	0	0	0	8852	709	25	4	1359	4	LMF1	16	1004476	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		1004476	89350277	102	36064											
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24582943	24582943	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	24582943	G	C	24582943	3	2	614	1	0	0	0	0	1	0	0	0	13116	942	33	4	4680	4	RBBP6	16	24582943	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	23578467	24582943	65771810	103	36065											
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53691402	53691402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	53691402	A	G	53691402	3	3	614	1	0	0	0	0	1	0	0	0	13563	217	8	3	2463	3	RPGRIP1L	16	53691402	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	29108459	53691402	36663351	104	36066											
ADAP2	55803	hgsc.bcm.edu;broad.mit.edu	37	17	29261211	29261211	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	29261211	G	-	29261211	7	5	614	1	0	1	0	1	0	0	0	0	280	943	33	0	424	0	ADAP2	17	29261211	Frame_Shift_Del	DEL	G	TCGA-DZ-6132-01A-11D-1961-08		29261211	51933999	105	36067											
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33966737	33966737	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	33966737	A	C	33966737	3	2	614	1	0	0	0	0	1	0	0	0	741	388	14	5	1433	5	AP2B1	17	33966737	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	4705526	33966737	47228473	106	36068											
CBX1	10951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46152378	46152378	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	46152378	G	A	46152378	2	1	614	1	0	0	0	0	0	0	0	1	2719	991	35	2		2	CBX1	17	46152378	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	12185641	46152378	35042832	107	36069											
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56572475	56572475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	56572475	C	T	56572475	3	4	614	1	0	0	0	0	1	0	0	0	9953	855	30	2	575	2	MTMR4	17	56572475	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	10420097	56572475	24622735	108	36070											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57771125	57771125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	57771125	T	C	57771125	3	2	614	1	0	0	0	0	1	0	0	0	3568	1725	60	3	5066	3	CLTC	17	57771125	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	1198650	57771125	23424085	109	36071											
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	59945081	59945082	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	GAA	59945082	-	GAA	59945081	7	5	614	1	0	1	1	0	0	0	0	0	7785	1812	63	0	166	0	INTS2	17	59945081	In_Frame_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	2173956	59945081	21250129	110	36072											
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61570904	61570904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	61570904	G	T	61570904	3	4	614	1	0	0	0	0	1	0	0	0	136	1000	35	4	3301	4	ACE	17	61570904	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	1625823	61570904	19624306	111	36073											
TMC8	147138	broad.mit.edu;bcgsc.ca	37	17	76133812	76133812	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	76133812	C	T	76133812	2	4	614	1	0	0	0	0	0	0	0	1	16003	639	23	1		1	TMC8	17	76133812	Silent	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	14562908	76133812	5061398	112	36074											
BAIAP2	10458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	79082274	79082274	+	Splice_Site	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	79082274	G	-	79082274	8	5	614	1	0	1	0	1	0	0	1	0	1301	1014	35	0	1550	0	BAIAP2	17	79082274	Splice_Site	DEL	G	TCGA-DZ-6132-01A-11D-1961-08	2948462	79082274	2112936	113	36075											
DYM	54808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46956680	46956680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	46956680	T	G	46956680	3	3	614	1	0	0	0	0	1	0	0	0	4842	1783	62	5	1988	5	DYM	18	46956680	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		46956680	31120568	114	36076											
SERPINB2	5055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61562567	61562567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	61562567	G	T	61562567	3	4	614	1	0	0	0	0	1	0	0	0	14114	1348	47	4	244	4	SERPINB2	18	61562567	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	14605887	61562567	16514681	115	36077											
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	67992496	67992496	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	-	67992496	A	-	67992496	7	5	614	1	0	1	0	1	0	0	0	0	14931	362	13	0	594	0	SOCS6	18	67992496	Frame_Shift_Del	DEL	A	TCGA-DZ-6132-01A-11D-1961-08	6429929	67992496	10084752	116	36078											
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	8527467	T	G	8527467	5	3	614	1	0	0	0	0	0	0	1	0	7278	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		8527467	50601516	117	36079											
ZNF699	374879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9406673	9406673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	9406673	G	C	9406673	3	2	614	1	0	0	0	0	1	0	0	0	18113	1368	48	4	525	4	ZNF699	19	9406673	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	879206	9406673	49722310	118	36080											
ICAM5	7087	ucsc.edu	37	19	10402464	10402464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	10402464	C	A	10402464	3	1	614	1	0	0	0	0	1	0	0	0	7490	623	22	4	662	4	ICAM5	19	10402464	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	995791	10402464	48726519	119	36081											
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18274091	18274091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	18274091	G	A	18274091	3	1	614	1	0	0	0	0	1	0	0	0	11926	1174	41	2	1347	2	PIK3R2	19	18274091	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	7871627	18274091	40854892	120	36082											
ZNF85	7639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21132080	21132080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	21132080	G	A	21132080	3	1	614	1	0	0	0	0	1	0	0	0	18205	1349	47	2	774	2	ZNF85	19	21132080	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	2857989	21132080	37996903	121	36083											
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	21132138	21132138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	21132138	T	C	21132138	3	2	614	1	0	0	0	0	1	0	0	0	18205	1609	56	3	832	3	ZNF85	19	21132138	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	58	21132138	37996845	122	36084											
LGI4	163175	broad.mit.edu;ucsc.edu	37	19	35617765	35617765	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	35617765	T	A	35617765	3	1	614	1	0	0	0	0	1	0	0	0	8761	1551	54	5	840	5	LGI4	19	35617765	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	14485627	35617765	23511218	123	36085											
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39964723	39964723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	39964723	C	A	39964723	3	1	614	1	0	0	0	0	1	0	0	0	15411	506	18	4	2711	4	SUPT5H	19	39964723	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	4346958	39964723	19164260	124	36086											
LGALS13	29124	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40095901	40095901	+	Missense_Mutation	SNP	G	G	T	rs138148689		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	40095901	G	T	40095901	3	4	614	1	0	0	0	0	1	0	0	0	8747	1203	42	4	186	4	LGALS13	19	40095901	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	131178	40095901	19033082	125	36087											
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42907053	42907053	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	42907053	G	A	42907053	2	1	614	1	0	0	0	0	0	0	0	1	8828	1219	43	2		2	LIPE	19	42907053	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	2811152	42907053	16221930	126	36088											
ZNF223	7766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44570872	44570872	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	44570872	C	T	44570872	2	4	614	1	0	0	0	0	0	0	0	1	17789	854	30	2		2	ZNF223	19	44570872	Silent	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	1663819	44570872	14558111	127	36089											
PIH1D1	55011	broad.mit.edu	37	19	49950353	49950353	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	49950353	A	G	49950353	2	3	614	1	0	0	0	0	0	0	0	1	11913	175	7	3		3	PIH1D1	19	49950353	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	5379481	49950353	9178630	128	36090											
FCGRT	2217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50017313	50017313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	50017313	A	G	50017313	3	3	614	1	0	0	0	0	1	0	0	0	5793	449	16	3	254	3	FCGRT	19	50017313	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	66960	50017313	9111670	129	36091											
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50549983	50549983	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	C	50549983	G	C	50549983	3	2	614	1	0	0	0	0	1	0	0	0	17943	991	35	4	2297	4	ZNF473	19	50549983	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	532670	50549983	8579000	130	36092											
TTYH1	57348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54937848	54937848	+	Splice_Site	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	G	54937848	A	G	54937848	5	3	614	1	0	0	0	0	0	0	1	0	16751	202	7	3	655	3	TTYH1	19	54937848	Splice_Site	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	4387865	54937848	4191135	131	36093											
KIR2DL4	3805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	55324637	55324637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	T	55324637	C	T	55324637	3	4	614	1	0	0	0	0	1	0	0	0	8325	507	18	2	786	2	KIR2DL4	19	55324637	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	386789	55324637	3804346	132	36094											
STAU1	6780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47741019	47741019	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	47741019	T	A	47741019	4	1	614	1	0	0	0	0	0	1	0	0	15284	1792	62	5	1050	5	STAU1	20	47741019	Nonsense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		47741019	15284501	133	36095											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41496201	41496202	+	Missense_Mutation	DNP	AA	AA	TG	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	TG	41496202	AA	TG	41496201	3	4	614	1	0	0	0	0	1	0	0	0	4770	14	1	5	2477	5	DSCAM	21	41496201	Missense_Mutation	DNP	AA	TCGA-DZ-6132-01A-11D-1961-08		41496201	6633694	134	36096											
BCR	613	broad.mit.edu;bcgsc.ca	37	22	23523615	23523616	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	23523616	-	A	23523615	7	5	614	1	0	1	1	0	0	0	0	0	1388	581	21	0	470	0	BCR	22	23523615	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08		23523615	27780951	135	36097											
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101910063	101910063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	A	101910063	T	A	101910063	3	1	614	1	0	0	0	0	1	0	0	0	6729	1580	55	5	1224	5	GPRASP1	23	101910063	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		101910063	53360497	136	36098											
TAS1R3	83756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1269265	1269265	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	1269265	G	A	1269265	2	1	615	1	0	0	0	0	0	0	0	1	15576	1335	47	2		2	TAS1R3	1	1269265	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		1269265	247981356	1	36099											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19448476	19448477	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	19448477	-	A	19448476	7	5	615	1	0	1	1	0	0	0	0	0	16916	710	25	0	5864	0	UBR4	1	19448476	Frame_Shift_Ins	INS	-	TCGA-DZ-6133-01A-11D-1961-08	18179211	19448476	229802145	2	36100											
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22902942	22902942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	22902942	G	A	22902942	3	1	615	1	0	0	0	0	1	0	0	0	5175	1087	38	1	402	1	EPHA8	1	22902942	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	3454466	22902942	226347679	3	36101											
KDM4A	9682	broad.mit.edu	37	1	44169937	44169937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	44169937	A	G	44169937	3	3	615	1	0	0	0	0	1	0	0	0	8135	159	6	3	3173	3	KDM4A	1	44169937	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	21266995	44169937	205080684	4	36102											
SLC6A9	6536	broad.mit.edu	37	1	44467233	44467233	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	44467233	G	C	44467233	2	2	615	1	0	0	0	0	0	0	0	1	14704	1335	47	4		4	SLC6A9	1	44467233	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	297296	44467233	204783388	5	36103											
FGGY	55277	broad.mit.edu	37	1	59812021	59812021	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	59812021	G	C	59812021	3	2	615	1	0	0	0	0	1	0	0	0	5878	1232	43	4	426	4	FGGY	1	59812021	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	15344788	59812021	189438600	6	36104											
VANGL1	81839	ucsc.edu	37	1	116226588	116226588	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	116226588	C	T	116226588	4	4	615	1	0	0	0	0	0	1	0	0	17131	595	21	2	988	2	VANGL1	1	116226588	Nonsense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	56414567	116226588	133024033	7	36105											
PSMB4	5692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151372078	151372078	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	151372078	G	A	151372078	2	1	615	1	0	0	0	0	0	0	0	1	12689	1339	47	2		2	PSMB4	1	151372078	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	35145490	151372078	97878543	8	36106											
INSRR	3645	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156823725	156823725	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	156823725	G	A	156823725	2	1	615	1	0	0	0	0	0	0	0	1	7781	1335	47	2		2	INSRR	1	156823725	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	5451647	156823725	92426896	9	36107											
PLEKHA6	22874	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204226699	204226699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	204226699	C	T	204226699	3	4	615	1	0	0	0	0	1	0	0	0	12067	835	29	2	1896	2	PLEKHA6	1	204226699	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	47402974	204226699	45023922	10	36108											
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	211192165	211192165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	211192165	G	A	211192165	3	1	615	1	0	0	0	0	1	0	0	0	8038	971	34	2	2001	2	KCNH1	1	211192165	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	6965466	211192165	38058456	11	36109											
SPATA17	128153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	217975148	217975148	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	217975148	G	T	217975148	4	4	615	1	0	0	0	0	0	1	0	0	15014	943	33	4	995	4	SPATA17	1	217975148	Nonsense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	6782983	217975148	31275473	12	36110											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228494234	228494234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	228494234	G	A	228494234	3	1	615	1	0	0	0	0	1	0	0	0	10819	1232	43	2	11991	2	OBSCN	1	228494234	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	10519086	228494234	20756387	13	36111											
OR2L8	391190	hgsc.bcm.edu	37	1	248112762	248112763	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	-	248112763	TG	-	248112762	7	5	615	1	0	1	0	1	0	0	0	0	11016	1693	59	0	605	0	OR2L8	1	248112762	Frame_Shift_Del	DEL	TG	TCGA-DZ-6133-01A-11D-1961-08	19618528	248112762	1137859	14	36112											
PAPOLG	64895	broad.mit.edu	37	2	61009021	61009021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	61009021	T	C	61009021	3	2	615	1	0	0	0	0	1	0	0	0	11438	1652	57	3	950	3	PAPOLG	2	61009021	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		61009021	182190352	15	36113											
TGFA	7039	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70742029	70742029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	70742029	G	A	70742029	3	1	615	1	0	0	0	0	1	0	0	0	15827	1087	38	1	446	1	TGFA	2	70742029	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	9733008	70742029	172457344	16	36114											
DCTN1	1639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74597431	74597431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	74597431	T	A	74597431	3	1	615	1	0	0	0	0	1	0	0	0	4308	1609	56	5	2751	5	DCTN1	2	74597431	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	3855402	74597431	168601942	17	36115											
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102493544	102493544	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	102493544	C	A	102493544	2	1	615	1	0	0	0	0	0	0	0	1	9269	816	29	4		4	MAP4K4	2	102493544	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	27896113	102493544	140705829	18	36116											
UPP2	151531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	158971732	158971732	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	158971732	A	G	158971732	2	3	615	1	0	0	0	0	0	0	0	1	17025	330	12	3		3	UPP2	2	158971732	Silent	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	56478188	158971732	84227641	19	36117											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179468605	179468605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	179468605	A	G	179468605	3	3	615	1	0	0	0	0	1	0	0	0	16747	449	16	3	53208	3	TTN	2	179468605	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	20496873	179468605	63730768	20	36118											
RPL37A	6168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217364692	217364692	+	Silent	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	217364692	T	A	217364692	2	1	615	1	0	0	0	0	0	0	0	1	13603	1567	55	5		5	RPL37A	2	217364692	Silent	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	37896087	217364692	25834681	21	36119											
SP110	3431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231077477	231077477	+	Silent	SNP	T	T	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	231077477	T	G	231077477	2	3	615	1	0	0	0	0	0	0	0	1	14974	1594	55	5		5	SP110	2	231077477	Silent	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	13712785	231077477	12121896	22	36120											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47049869	47049869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	47049869	G	A	47049869	3	1	615	1	0	0	0	0	1	0	0	0	10196	1203	42	2	8018	2	NBEAL2	3	47049869	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		47049869	150972561	23	36121											
NICN1	84276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49463424	49463424	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	49463424	C	G	49463424	2	3	615	1	0	0	0	0	0	0	0	1	10420	465	17	4		4	NICN1	3	49463424	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	2413555	49463424	148559006	24	36122											
SFMBT1	51460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52988412	52988412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	52988412	A	G	52988412	3	3	615	1	0	0	0	0	1	0	0	0	14170	217	8	3	2632	3	SFMBT1	3	52988412	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	3524988	52988412	145034018	25	36123											
LRIG1	26018	broad.mit.edu	37	3	66460690	66460690	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	66460690	C	A	66460690	2	1	615	1	0	0	0	0	0	0	0	1	8951	581	21	4		4	LRIG1	3	66460690	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	13472278	66460690	131561740	26	36124											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101390027	101390027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	101390027	A	G	101390027	3	3	615	1	0	0	0	0	1	0	0	0	17536	72	3	3	2472	3	ZBTB11	3	101390027	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	34929337	101390027	96632403	27	36125											
SLCO2A1	6578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	133692538	133692538	+	Silent	SNP	G	G	C	rs150677069	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	133692538	G	C	133692538	2	2	615	1	0	0	0	0	0	0	0	1	14739	1103	39	4		4	SLCO2A1	3	133692538	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	32302511	133692538	64329892	28	36126											
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194146121	194146121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	194146121	G	A	194146121	3	1	615	1	0	0	0	0	1	0	0	0	1125	1319	46	2	433	2	ATP13A3	3	194146121	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	60453583	194146121	3876309	29	36127											
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	4322599	4322599	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	4322599	C	A	4322599	2	1	615	1	0	0	0	0	0	0	0	1	17562	610	22	4		4	ZBTB49	4	4322599	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		4322599	186831677	30	36128											
CCKAR	886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	26483517	26483517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	26483517	C	T	26483517	3	4	615	1	0	0	0	0	1	0	0	0	2882	922	32	2	260	2	CCKAR	4	26483517	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	22160918	26483517	164670759	31	36129											
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79516549	79516549	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	79516549	A	G	79516549	2	3	615	1	0	0	0	0	0	0	0	1	719	11	1	3		3	ANXA3	4	79516549	Silent	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	53033032	79516549	111637727	32	36130											
PLRG1	5356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155470082	155470082	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	155470082	T	C	155470082	2	2	615	1	0	0	0	0	0	0	0	1	12113	1625	57	3		3	PLRG1	4	155470082	Silent	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	75953533	155470082	35684194	33	36131											
SLC6A18	348932	broad.mit.edu	37	5	1225707	1225707	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	1225707	G	C	1225707	3	2	615	1	0	0	0	0	1	0	0	0	14694	1232	43	4	117	4	SLC6A18	5	1225707	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		1225707	179689553	34	36132											
TMEM167A	153339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82357708	82357708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	82357708	A	G	82357708	3	3	615	1	0	0	0	0	1	0	0	0	16093	159	6	3	90	3	TMEM167A	5	82357708	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	81132001	82357708	98557552	35	36133											
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	95728748	95728748	+	Missense_Mutation	SNP	C	C	T	rs140941383		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	95728748	C	T	95728748	3	4	615	1	0	0	0	0	1	0	0	0	11607	652	23	1	46	1	PCSK1	5	95728748	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	13371040	95728748	85186512	36	36134											
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	98236974	98236974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	98236974	T	C	98236974	3	2	615	1	0	0	0	0	1	0	0	0	3325	1783	62	3	4753	3	CHD1	5	98236974	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	2508226	98236974	82678286	37	36135											
SLC25A46	91137	hgsc.bcm.edu	37	5	110075085	110075085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	110075085	G	C	110075085	3	2	615	1	0	0	0	0	1	0	0	0	14524	1377	48	4	267	4	SLC25A46	5	110075085	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	11838111	110075085	70840175	38	36136											
KIF20A	10112	ucsc.edu	37	5	137519414	137519415	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	TT	137519415	GG	TT	137519414	3	4	615	1	0	0	0	0	1	0	0	0	8293	1232	43	4	1211	4	KIF20A	5	137519414	Missense_Mutation	DNP	GG	TCGA-DZ-6133-01A-11D-1961-08	27444329	137519414	43395846	39	36137											
HDAC3	8841	ucsc.edu	37	5	141007714	141007714	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	141007714	C	A	141007714	2	1	615	1	0	0	0	0	0	0	0	1	7015	581	21	4		4	HDAC3	5	141007714	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	3488300	141007714	39907546	40	36138											
GTF2H4	2968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30877829	30877829	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	30877829	C	T	30877829	2	4	615	1	0	0	0	0	0	0	0	1	6872	610	22	2		2	GTF2H4	6	30877829	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		30877829	140237238	41	36139											
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30883015	30883015	+	Splice_Site	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	30883015	G	A	30883015	5	1	615	1	0	0	0	0	0	0	1	0	17136	1275	44	2	384	2	VARS2	6	30883015	Splice_Site	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	5186	30883015	140232052	42	36140											
VARS	7407	ucsc.edu	37	6	31745374	31745374	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	31745374	C	T	31745374	2	4	615	1	0	0	0	0	0	0	0	1	17135	465	17	2		2	VARS	6	31745374	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	862359	31745374	139369693	43	36141											
HLA-DQA2	3118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32714066	32714066	+	Silent	SNP	C	C	T	rs143176293		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	32714066	C	T	32714066	2	4	615	1	0	0	0	0	0	0	0	1	7212	776	27	1		1	HLA-DQA2	6	32714066	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	968692	32714066	138401001	44	36142											
SCUBE3	222663	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35199528	35199528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	35199528	G	T	35199528	3	4	615	1	0	0	0	0	1	0	0	0	13959	1116	39	4	375	4	SCUBE3	6	35199528	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	2485462	35199528	135915539	45	36143											
CDC5L	988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44390515	44390515	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	44390515	A	T	44390515	3	4	615	1	0	0	0	0	1	0	0	0	3084	275	10	5	1411	5	CDC5L	6	44390515	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	9190987	44390515	126724552	46	36144											
RCAN2	10231	hgsc.bcm.edu	37	6	46216582	46216582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	46216582	G	C	46216582	3	2	615	1	0	0	0	0	1	0	0	0	13182	962	34	4	466	4	RCAN2	6	46216582	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	1826067	46216582	124898485	47	36145											
PLEKHG1	57480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151151821	151151821	+	Missense_Mutation	SNP	C	C	T	rs138970683		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	151151821	C	T	151151821	3	4	615	1	0	0	0	0	1	0	0	0	12075	768	27	1	1628	1	PLEKHG1	6	151151821	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	104935239	151151821	19963246	48	36146											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152671451	152671451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	152671451	T	C	152671451	3	2	615	1	0	0	0	0	1	0	0	0	15457	1551	54	3	15013	3	SYNE1	6	152671451	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	1519630	152671451	18443616	49	36147											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	157527600	157527600	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	157527600	G	A	157527600	2	1	615	1	0	0	0	0	0	0	0	1	914	991	35	2		2	ARID1B	6	157527600	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	4856149	157527600	13587467	50	36148											
IGF2R	3482	ucsc.edu	37	6	160483635	160483636	+	Missense_Mutation	DNP	CG	CG	AA	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	AA	160483636	CG	AA	160483635	3	1	615	1	0	0	0	0	1	0	0	0	7583	639	23	4	3756	4	IGF2R	6	160483635	Missense_Mutation	DNP	CG	TCGA-DZ-6133-01A-11D-1961-08	2956035	160483635	10631432	51	36149											
TMEM120A	83862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75617587	75617587	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	75617587	G	T	75617587	2	4	615	1	0	0	0	0	0	0	0	1	16045	1277	45	4		4	TMEM120A	7	75617587	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		75617587	83521076	52	36150											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100349824	100349824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	100349824	C	A	100349824	3	1	615	1	0	0	0	0	1	0	0	0	17525	855	30	4	2146	4	ZAN	7	100349824	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	24732237	100349824	58788839	53	36151											
EPHB6	2051	broad.mit.edu	37	7	142566068	142566068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	142566068	G	C	142566068	3	2	615	1	0	0	0	0	1	0	0	0	5180	1116	39	4	2026	4	EPHB6	7	142566068	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	42216244	142566068	16572595	54	36152											
ANGPT2	285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6360731	6360731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	6360731	G	T	6360731	3	4	615	1	0	0	0	0	1	0	0	0	611	1348	47	4	112	4	ANGPT2	8	6360731	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		6360731	140003291	55	36153											
BIN3	55909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	22488017	22488017	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	22488017	G	A	22488017	2	1	615	1	0	0	0	0	0	0	0	1	1434	933	33	2		2	BIN3	8	22488017	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	16127286	22488017	123876005	56	36154											
FABP12	646486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	82441686	82441686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	82441686	C	T	82441686	3	4	615	1	0	0	0	0	1	0	0	0	5360	739	26	2	199	2	FABP12	8	82441686	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	59953669	82441686	63922336	57	36155											
RIPK2	8767	broad.mit.edu	37	8	90798839	90798839	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	90798839	C	G	90798839	3	3	615	1	0	0	0	0	1	0	0	0	13394	827	29	4	1082	4	RIPK2	8	90798839	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	8357153	90798839	55565183	58	36156											
RHPN1	114822	broad.mit.edu	37	8	144462787	144462787	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	-	144462787	G	-	144462787	7	5	615	1	0	1	0	1	0	0	0	0	13363	1335	47	0	1287	0	RHPN1	8	144462787	Frame_Shift_Del	DEL	G	TCGA-DZ-6133-01A-11D-1961-08	53663948	144462787	1901235	59	36157											
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8471073	8471073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	8471073	T	C	8471073	3	2	615	1	0	0	0	0	1	0	0	0	12812	1744	61	3	2441	3	PTPRD	9	8471073	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		8471073	132742358	60	36158											
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32541815	32541815	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	32541815	C	G	32541815	3	3	615	1	0	0	0	0	1	0	0	0	16382	536	19	4	433	4	TOPORS	9	32541815	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	24070742	32541815	108671616	61	36159											
VCP	7415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35061057	35061057	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	35061057	A	G	35061057	2	3	615	1	0	0	0	0	0	0	0	1	17152	214	8	3		3	VCP	9	35061057	Silent	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	2519242	35061057	106152374	62	36160											
PRKACG	5568	broad.mit.edu	37	9	71629038	71629039	+	Splice_Site	INS	-	-	GCGGCG	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	GCGGCG	71629039	-	GCGGCG	71629038	8	5	615	1	0	1	1	0	0	0	1	0	12509	898	31	0		0	PRKACG	9	71629038	Splice_Site	INS	-	TCGA-DZ-6133-01A-11D-1961-08	36567981	71629038	69584393	63	36161											
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	74313090	74313090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	74313090	G	T	74313090	3	4	615	1	0	0	0	0	1	0	0	0	16133	1194	42	4	763	4	TMEM2	9	74313090	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	2684052	74313090	66900341	64	36162											
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118949550	118949550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	118949550	G	T	118949550	3	4	615	1	0	0	0	0	1	0	0	0	11439	1058	37	4	539	4	PAPPA	9	118949550	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	44636460	118949550	22263881	65	36163											
ADAMTS14	140766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72503320	72503320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	72503320	G	T	72503320	3	4	615	1	0	0	0	0	1	0	0	0	259	962	34	4	2000	4	ADAMTS14	10	72503320	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		72503320	63031427	66	36164											
CPEB3	22849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	93812079	93812079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	93812079	A	G	93812079	3	3	615	1	0	0	0	0	1	0	0	0	3804	188	7	3	113	3	CPEB3	10	93812079	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	21308759	93812079	41722668	67	36165											
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	99120314	99120314	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	-	99120314	G	-	99120314	7	5	615	1	0	1	0	1	0	0	0	0	13699	1000	35	0	280	0	RRP12	10	99120314	Frame_Shift_Del	DEL	G	TCGA-DZ-6133-01A-11D-1961-08	5308235	99120314	36414433	68	36166											
KNDC1	85442	broad.mit.edu	37	10	135012252	135012252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	135012252	G	C	135012252	3	2	615	1	0	0	0	0	1	0	0	0	8433	1232	43	4	2294	4	KNDC1	10	135012252	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	35891938	135012252	522495	69	36167											
SMPD1	6609	hgsc.bcm.edu	37	11	6411953	6411953	+	Missense_Mutation	SNP	C	C	G	rs200577287	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	6411953	C	G	6411953	3	3	615	1	0	0	0	0	1	0	0	0	14817	768	27	4	127	4	SMPD1	11	6411953	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		6411953	128594563	70	36168											
HARBI1	283254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46637368	46637368	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	46637368	C	A	46637368	2	1	615	1	0	0	0	0	0	0	0	1	6965	842	30	4		4	HARBI1	11	46637368	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	40225415	46637368	88369148	71	36169											
MMP3	4314	ucsc.edu;bcgsc.ca	37	11	102713447	102713447	+	Silent	SNP	G	G	T	rs41380244	byfrequency;alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	102713447	G	T	102713447	2	4	615	1	0	0	0	0	0	0	0	1	9673	987	35	4		4	MMP3	11	102713447	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	56076079	102713447	32293069	72	36170											
ANKK1	255239	hgsc.bcm.edu;broad.mit.edu	37	11	113270078	113270078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	113270078	A	G	113270078	3	3	615	1	0	0	0	0	1	0	0	0	631	275	10	3	1417	3	ANKK1	11	113270078	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	10556631	113270078	21736438	73	36171											
PEX5	5830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	7343122	7343122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	7343122	T	C	7343122	3	2	615	1	0	0	0	0	1	0	0	0	11755	1710	59	3	151	3	PEX5	12	7343122	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		7343122	126508773	74	36172											
GSG1	83445	broad.mit.edu;bcgsc.ca	37	12	13243503	13243503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	13243503	G	A	13243503	3	1	615	1	0	0	0	0	1	0	0	0	6827	1115	39	1	938	1	GSG1	12	13243503	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	5900381	13243503	120608392	75	36173											
IPO8	10526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	30790088	30790088	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	30790088	C	G	30790088	2	3	615	1	0	0	0	0	0	0	0	1	7805	813	29	4		4	IPO8	12	30790088	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	17546585	30790088	103061807	76	36174											
FAM60A	58516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	31435663	31435663	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	31435663	A	C	31435663	3	2	615	1	0	0	0	0	1	0	0	0	5602	304	11	5	20	5	FAM60A	12	31435663	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	645575	31435663	102416232	77	36175											
FMNL3	91010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50041978	50041978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	50041978	C	T	50041978	3	4	615	1	0	0	0	0	1	0	0	0	5960	835	29	2	429	2	FMNL3	12	50041978	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	18606315	50041978	83809917	78	36176											
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52145329	52145329	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	-	52145329	C	-	52145329	7	5	615	1	0	1	0	1	0	0	0	0	13937	506	18	0	2372	0	SCN8A	12	52145329	Frame_Shift_Del	DEL	C	TCGA-DZ-6133-01A-11D-1961-08	2103351	52145329	81706566	79	36177											
KRT83	3889	broad.mit.edu;ucsc.edu	37	12	52708468	52708468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	52708468	C	T	52708468	3	4	615	1	0	0	0	0	1	0	0	0	8504	594	21	2	56	2	KRT83	12	52708468	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	563139	52708468	81143427	80	36178											
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	98941479	98941479	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	-	98941479	A	-	98941479	7	5	615	1	0	1	0	1	0	0	0	0	16249	246	9	0	2766	0	TMPO	12	98941479	Frame_Shift_Del	DEL	A	TCGA-DZ-6133-01A-11D-1961-08	46233011	98941479	34910416	81	36179											
HSP90B1	7184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104336447	104336447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	104336447	T	C	104336447	3	2	615	1	0	0	0	0	1	0	0	0	7410	1609	56	3	1563	3	HSP90B1	12	104336447	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	5394968	104336447	29515448	82	36180											
MYO1H	283446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109834250	109834250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	109834250	C	T	109834250	3	4	615	1	0	0	0	0	1	0	0	0	10082	681	24	2	314	2	MYO1H	12	109834250	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	5497803	109834250	24017645	83	36181											
SRRM4	84530	broad.mit.edu;bcgsc.ca	37	12	119568567	119568567	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	-	119568567	C	-	119568567	7	5	615	1	0	1	0	1	0	0	0	0	15183	738	26	0	729	0	SRRM4	12	119568567	Frame_Shift_Del	DEL	C	TCGA-DZ-6133-01A-11D-1961-08	9734317	119568567	14283328	84	36182											
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124848291	124848291	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	124848291	A	G	124848291	2	3	615	1	0	0	0	0	0	0	0	1	10243	214	8	3		3	NCOR2	12	124848291	Silent	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	5279724	124848291	9003604	85	36183											
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132522561	132522562	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	AT	132522562	GC	AT	132522561	3	1	615	1	0	0	0	0	1	0	0	0	5151	971	34	2	6246	2	EP400	12	132522561	Missense_Mutation	DNP	GC	TCGA-DZ-6133-01A-11D-1961-08	7674270	132522561	1329334	86	36184											
KBTBD6	89890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41704906	41704906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	41704906	T	C	41704906	3	2	615	1	0	0	0	0	1	0	0	0	8004	1725	60	3	286	3	KBTBD6	13	41704906	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		41704906	73464972	87	36185											
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	101944368	101944368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	101944368	G	T	101944368	3	4	615	1	0	0	0	0	1	0	0	0	10155	1310	46	4	4340	4	NALCN	13	101944368	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	60239462	101944368	13225510	88	36186											
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	72055716	72055716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	72055716	T	C	72055716	3	2	615	1	0	0	0	0	1	0	0	0	14342	1580	55	3	1129	3	SIPA1L1	14	72055716	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		72055716	35293824	89	36187			1	75		2	2	19	T		6.802816e-05
SIPA1L1	26037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	72055734	72055734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	72055734	T	A	72055734	3	1	615	1	0	0	0	0	1	0	0	0	14342	1841	64	5	1147	5	SIPA1L1	14	72055734	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	18	72055734	35293806	90	36188			1	75		2	2	19	T		6.802816e-05
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	39885267	39885267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	39885267	T	C	39885267	3	2	615	1	0	0	0	0	1	0	0	0	15865	1435	50	3	2900	3	THBS1	15	39885267	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		39885267	62646125	91	36189											
EPB42	2038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43508525	43508525	+	Missense_Mutation	SNP	C	C	T	rs202154600		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	43508525	C	T	43508525	3	4	615	1	0	0	0	0	1	0	0	0	5160	768	27	1	1986	1	EPB42	15	43508525	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	3623258	43508525	59022867	92	36190											
TLN2	83660	ucsc.edu	37	15	63047869	63047869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	63047869	G	A	63047869	3	1	615	1	0	0	0	0	1	0	0	0	15960	1319	46	2	4749	2	TLN2	15	63047869	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	19539344	63047869	39483523	93	36191											
HMG20A	10363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77756662	77756662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	77756662	A	G	77756662	3	3	615	1	0	0	0	0	1	0	0	0	7228	130	5	3	176	3	HMG20A	15	77756662	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	14708793	77756662	24774730	94	36192											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2130345	2130345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	2130345	G	A	2130345	3	1	615	1	0	0	0	0	1	0	0	0	16618	1232	43	2	3691	2	TSC2	16	2130345	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		2130345	88224408	95	36193											
NLRC3	197358	ucsc.edu	37	16	3613310	3613310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	3613310	C	T	3613310	3	4	615	1	0	0	0	0	1	0	0	0	10475	652	23	1	1634	1	NLRC3	16	3613310	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	1482965	3613310	86741443	96	36194											
LOC81691	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20851091	20851091	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	20851091	C	T	20851091	2	4	615	1	0	0	0	0	0	0	0	1	8897	581	21	2		2	LOC81691	16	20851091	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	17237781	20851091	69503662	97	36195											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	16089949	16089949	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	16089949	G	C	16089949	4	2	615	1	0	0	0	0	0	1	0	0	10242	1294	45	4	7337	4	NCOR1	17	16089949	Nonsense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		16089949	65105261	98	36196											
SRCIN1	80725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36708962	36708962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	36708962	C	G	36708962	3	3	615	1	0	0	0	0	1	0	0	0	15148	695	24	4	1252	4	SRCIN1	17	36708962	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	20619013	36708962	44486248	99	36197											
CASC3	22794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38319005	38319005	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	38319005	G	A	38319005	4	1	615	1	0	0	0	0	0	1	0	0	2663	1183	41	2	658	2	CASC3	17	38319005	Nonsense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	1610043	38319005	42876205	100	36198											
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56348163	56348163	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	56348163	A	T	56348163	3	4	615	1	0	0	0	0	1	0	0	0	9739	304	11	5	149	5	MPO	17	56348163	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	18029158	56348163	24847047	101	36199											
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	59981846	59981846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	59981846	G	T	59981846	3	4	615	1	0	0	0	0	1	0	0	0	7785	962	34	4	2376	4	INTS2	17	59981846	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	3633683	59981846	21213364	102	36200											
PALM	5064	ucsc.edu;bcgsc.ca	37	19	731193	731193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	731193	C	G	731193	3	3	615	1	0	0	0	0	1	0	0	0	11415	652	23	4	386	4	PALM	19	731193	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		731193	58397790	103	36201											
PIP5K1C	23396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3648675	3648675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	3648675	C	T	3648675	3	4	615	1	0	0	0	0	1	0	0	0	11948	652	23	1	887	1	PIP5K1C	19	3648675	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	2917482	3648675	55480308	104	36202											
APBA3	9546	bcgsc.ca	37	19	3760228	3760228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	3760228	C	T	3760228	3	4	615	1	0	0	0	0	1	0	0	0	758	623	22	2	1732	2	APBA3	19	3760228	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	111553	3760228	55368755	105	36203											
PSMD8	5714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38874011	38874011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	38874011	A	G	38874011	3	3	615	1	0	0	0	0	1	0	0	0	12714	188	7	3	1060	3	PSMD8	19	38874011	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	35113783	38874011	20254972	106	36204											
ZNF180	7733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44981073	44981073	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	C	44981073	G	C	44981073	3	2	615	1	0	0	0	0	1	0	0	0	17760	1029	36	4	457	4	ZNF180	19	44981073	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	6107062	44981073	14147910	107	36205											
RSPH6A	81492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46317979	46317979	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	46317979	G	A	46317979	2	1	615	1	0	0	0	0	0	0	0	1	13720	1256	44	2		2	RSPH6A	19	46317979	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	1336906	46317979	12811004	108	36206											
LILRA3	11026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54803120	54803120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	T	54803120	G	T	54803120	3	4	615	1	0	0	0	0	1	0	0	0	8793	1232	43	4	778	4	LILRA3	19	54803120	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	8485141	54803120	4325863	109	36207											
LENG8	114823	broad.mit.edu;bcgsc.ca	37	19	54963430	54963444	+	In_Frame_Del	DEL	GTGGCCAGTGCACAG	GTGGCCAGTGCACAG	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	GTGGCCAGTGCACAG	GTGGCCAGTGCACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	-	54963444	GTGGCCAGTGCACAG	-	54963430	7	5	615	1	0	1	0	1	0	0	0	0	8731	1377	48	0	205	0	LENG8	19	54963430	In_Frame_Del	DEL	GTGGCCAGTGCACAG	TCGA-DZ-6133-01A-11D-1961-08	160310	54963430	4165553	110	36208											
ZNF324B	388569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58966903	58966903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	58966903	T	A	58966903	3	1	615	1	0	0	0	0	1	0	0	0	17857	1464	51	5	602	5	ZNF324B	19	58966903	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	4003473	58966903	162080	111	36209											
MMP24	10893	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33851638	33851638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	A	33851638	C	A	33851638	3	1	615	1	0	0	0	0	1	0	0	0	9668	796	28	4	630	4	MMP24	20	33851638	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		33851638	29173882	112	36210											
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34800245	34800245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	34800245	A	G	34800245	3	3	615	1	0	0	0	0	1	0	0	0	5154	333	12	3	2189	3	EPB41L1	20	34800245	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	948607	34800245	28225275	113	36211											
NPEPL1	79716	hgsc.bcm.edu;broad.mit.edu	37	20	57276200	57276200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	57276200	A	G	57276200	3	3	615	1	0	0	0	0	1	0	0	0	10581	188	7	3	676	3	NPEPL1	20	57276200	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	22475955	57276200	5749320	114	36212											
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37410517	37410517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	37410517	C	G	37410517	3	3	615	1	0	0	0	0	1	0	0	0	14146	912	32	4	211	4	SETD4	21	37410517	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		37410517	10719378	115	36213											
CERK	64781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	47108141	47108141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	G	47108141	T	G	47108141	3	3	615	1	0	0	0	0	1	0	0	0	3269	1606	56	5	1224	5	CERK	22	47108141	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		47108141	4196425	116	36214											
BMP15	9210	broad.mit.edu	37	X	50654047	50654047	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	-	50654047	C	-	50654047	7	5	615	1	0	1	0	1	0	0	0	0	1458	697	25	0	266	0	BMP15	23	50654047	Frame_Shift_Del	DEL	C	TCGA-DZ-6133-01A-11D-1961-08		50654047	104616513	117	36215											
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	2160390	C	G	2160390	3	3	616	1	0	0	0	0	1	0	0	0	14370	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08		2160390	247090231	1	36216											
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9795602	9795602	+	Missense_Mutation	SNP	C	C	T	rs190578331		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	9795602	C	T	9795602	3	4	616	1	0	0	0	0	1	0	0	0	3563	710	25	2	1167	2	CLSTN1	1	9795602	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	7635212	9795602	239455019	2	36217											
SRRM1	10250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24993373	24993373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	24993373	C	T	24993373	3	4	616	1	0	0	0	0	1	0	0	0	15180	855	30	2	1746	2	SRRM1	1	24993373	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	15197771	24993373	224257248	3	36218											
BSDC1	55108	broad.mit.edu	37	1	32842099	32842099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	32842099	T	G	32842099	3	3	616	1	0	0	0	0	1	0	0	0	1530	1812	63	5	384	5	BSDC1	1	32842099	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	7848726	32842099	216408522	4	36219											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151378756	151378756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	151378756	G	A	151378756	3	1	616	1	0	0	0	0	1	0	0	0	12193	1261	44	2	1481	2	POGZ	1	151378756	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	118536657	151378756	97871865	5	36220											
BTG2	7832	broad.mit.edu	37	1	203276560	203276560	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	203276560	C	T	203276560	2	4	616	1	0	0	0	0	0	0	0	1	1556	581	21	2		2	BTG2	1	203276560	Silent	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	51897804	203276560	45974061	6	36221											
ACTA1	58	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	229568083	229568083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	229568083	C	T	229568083	3	4	616	1	0	0	0	0	1	0	0	0	191	623	22	2	599	2	ACTA1	1	229568083	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	26291523	229568083	19682538	7	36222											
PDIA6	10130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	10927529	10927529	+	Silent	SNP	A	A	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	10927529	A	T	10927529	2	4	616	1	0	0	0	0	0	0	0	1	11679	117	5	5		5	PDIA6	2	10927529	Silent	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		10927529	232271844	8	36223											
STAT1	6772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191859893	191859893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	191859893	A	T	191859893	3	4	616	1	0	0	0	0	1	0	0	0	15276	40	2	5	1482	5	STAT1	2	191859893	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08	180932364	191859893	51339480	9	36224											
WNT10A	80326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219754883	219754883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	219754883	G	A	219754883	3	1	616	1	0	0	0	0	1	0	0	0	17394	1261	44	2	564	2	WNT10A	2	219754883	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	27894990	219754883	23444490	10	36225											
GPR55	9290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231775289	231775289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	231775289	C	T	231775289	3	4	616	1	0	0	0	0	1	0	0	0	6706	797	28	2	574	2	GPR55	2	231775289	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	12020406	231775289	11424084	11	36226											
GRM2	2912	broad.mit.edu	37	3	51749233	51749233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	51749233	A	C	51749233	3	2	616	1	0	0	0	0	1	0	0	0	6804	159	6	5	1454	5	GRM2	3	51749233	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		51749233	146273197	12	36227											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	178936082	G	A	178936082	3	1	616	1	0	0	0	0	1	0	0	0	11920	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	127186849	178936082	19086348	13	36228											
HTT	3064	broad.mit.edu	37	4	3076604	3076609	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs10618869	alternate_allele	TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	CAGCAG	CAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	-	3076609	CAGCAG	-	3076604	7	5	616	1	0	1	0	1	0	0	0	0	7464	595	21	0	54	0	HTT	4	3076604	In_Frame_Del	DEL	CAGCAG	TCGA-DZ-6134-01A-11D-1961-08		3076604	188077672	14	36229											
PCDHB10	56126	broad.mit.edu	37	5	140573732	140573732	+	Missense_Mutation	SNP	G	G	A	rs17844579	bycluster	TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	140573732	G	A	140573732	3	1	616	1	0	0	0	0	1	0	0	0	11542	1087	38	1	1609	1	PCDHB10	5	140573732	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08		140573732	40341528	15	36230											
GFPT2	9945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179751868	179751868	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	179751868	G	A	179751868	2	1	616	1	0	0	0	0	0	0	0	1	6353	1161	41	2		2	GFPT2	5	179751868	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	39178136	179751868	1163392	16	36231											
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	34059742	34059742	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	34059742	C	T	34059742	4	4	616	1	0	0	0	0	0	1	0	0	6806	856	30	2	2120	2	GRM4	6	34059742	Nonsense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08		34059742	137055325	17	36232											
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43275462	43275462	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	43275462	T	C	43275462	2	2	616	1	0	0	0	0	0	0	0	1	3878	1509	53	3		3	CRIP3	6	43275462	Silent	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	9215720	43275462	127839605	18	36233											
ZNF679	168417	broad.mit.edu	37	7	63720697	63720697	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	63720697	A	G	63720697	2	3	616	1	0	0	0	0	0	0	0	1	18098	417	15	3		3	ZNF679	7	63720697	Silent	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		63720697	95417966	19	36234											
FZD1	8321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	90894779	90894779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	90894779	G	A	90894779	3	1	616	1	0	0	0	0	1	0	0	0	6135	1087	38	1	586	1	FZD1	7	90894779	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	27174082	90894779	68243884	20	36235											
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100016757	100016757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	100016757	T	C	100016757	3	2	616	1	0	0	0	0	1	0	0	0	17609	1580	55	3	1664	3	ZCWPW1	7	100016757	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	9121978	100016757	59121906	21	36236											
SERPINE1	5054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100780346	100780346	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	100780346	G	C	100780346	2	2	616	1	0	0	0	0	0	0	0	1	14124	1335	47	4		4	SERPINE1	7	100780346	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	763589	100780346	58358317	22	36237											
SLC26A5	375611	broad.mit.edu;bcgsc.ca	37	7	103017286	103017286	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	103017286	G	T	103017286	2	4	616	1	0	0	0	0	0	0	0	1	14533	1045	37	4		4	SLC26A5	7	103017286	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	2236940	103017286	56121377	23	36238											
HSDL2	84263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	115181173	115181173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	115181173	A	G	115181173	3	3	616	1	0	0	0	0	1	0	0	0	7401	449	16	3	555	3	HSDL2	9	115181173	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		115181173	26032258	24	36239											
ALAD	210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116151742	116151742	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	116151742	G	A	116151742	2	1	616	1	0	0	0	0	0	0	0	1	483	1368	48	2		2	ALAD	9	116151742	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	970569	116151742	25061689	25	36240											
DIP2C	22982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	390986	390986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	390986	G	A	390986	3	1	616	1	0	0	0	0	1	0	0	0	4531	1087	38	1	1418	1	DIP2C	10	390986	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08		390986	135143761	26	36241											
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12595265	12595265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	12595265	C	T	12595265	3	4	616	1	0	0	0	0	1	0	0	0	2599	565	20	2	140	2	CAMK1D	10	12595265	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	12204279	12595265	122939482	27	36242											
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu	37	10	116889093	116889093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	116889093	A	C	116889093	3	2	616	1	0	0	0	0	1	0	0	0	1207	130	5	5	643	5	ATRNL1	10	116889093	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08	104293828	116889093	18645654	28	36243											
SLC43A1	8501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57261478	57261478	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	57261478	T	A	57261478	3	1	616	1	0	0	0	0	1	0	0	0	14645	1841	64	5	852	5	SLC43A1	11	57261478	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08		57261478	77745038	29	36244											
CAPN5	726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	76825445	76825445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	76825445	C	T	76825445	3	4	616	1	0	0	0	0	1	0	0	0	2631	710	25	2	678	2	CAPN5	11	76825445	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	19563967	76825445	58181071	30	36245											
USP35	57558	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	77921303	77921303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	77921303	C	T	77921303	3	4	616	1	0	0	0	0	1	0	0	0	17078	652	23	1	2436	1	USP35	11	77921303	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	1095858	77921303	57085213	31	36246											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877713	82877713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	82877713	A	G	82877713	3	3	616	1	0	0	0	0	1	0	0	0	11580	131	5	3	1792	3	PCF11	11	82877713	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08	4956410	82877713	52128803	32	36247											
ATF7	11016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53910964	53910964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	53910964	G	A	53910964	3	1	616	1	0	0	0	0	1	0	0	0	1086	1059	37	1	46	1	ATF7	12	53910964	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08		53910964	79940931	33	36248											
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56558339	56558339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	56558339	T	C	56558339	3	2	616	1	0	0	0	0	1	0	0	0	14789	1464	51	3	336	3	SMARCC2	12	56558339	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	2647375	56558339	77293556	34	36249											
VSIG10	54621	hgsc.bcm.edu	37	12	118506354	118506354	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	118506354	T	C	118506354	2	2	616	1	0	0	0	0	0	0	0	1	17235	1606	56	3		3	VSIG10	12	118506354	Silent	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	61948015	118506354	15345541	35	36250											
GCH1	2643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55310765	55310765	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	55310765	C	T	55310765	2	4	616	1	0	0	0	0	0	0	0	1	6298	610	22	2		2	GCH1	14	55310765	Silent	SNP	C	TCGA-DZ-6134-01A-11D-1961-08		55310765	52038775	36	36251											
BTBD6	90135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105716270	105716270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	105716270	C	T	105716270	3	4	616	1	0	0	0	0	1	0	0	0	1547	739	26	2	733	2	BTBD6	14	105716270	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	50405505	105716270	1633270	37	36252											
MYO5C	55930	broad.mit.edu	37	15	52504078	52504078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	52504078	A	G	52504078	3	3	616	1	0	0	0	0	1	0	0	0	10087	131	5	3	1111	3	MYO5C	15	52504078	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		52504078	50027314	38	36253											
ACAN	176	hgsc.bcm.edu	37	15	89389052	89389052	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	89389052	C	G	89389052	3	3	616	1	0	0	0	0	1	0	0	0	117	825	29	4	1390	4	ACAN	15	89389052	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	36884974	89389052	13142340	39	36254											
FAM86A	196483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	5140457	5140457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	5140457	T	A	5140457	3	1	616	1	0	0	0	0	1	0	0	0	5650	1551	54	5	556	5	FAM86A	16	5140457	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08		5140457	85214296	40	36255											
TPPP3	51673	broad.mit.edu;bcgsc.ca	37	16	67424233	67424233	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	67424233	C	G	67424233	2	3	616	1	0	0	0	0	0	0	0	1	16427	813	29	4		4	TPPP3	16	67424233	Silent	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	62283776	67424233	22930520	41	36256											
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10426831	10426831	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	10426831	G	A	10426831	2	1	616	1	0	0	0	0	0	0	0	1	10042	1164	41	2		2	MYH2	17	10426831	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08		10426831	70768379	42	36257											
RHBDL3	162494	bcgsc.ca	37	17	30632400	30632400	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	30632400	C	T	30632400	2	4	616	1	0	0	0	0	0	0	0	1	13336	871	31	1		1	RHBDL3	17	30632400	Silent	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	20205569	30632400	50562810	43	36258											
RDM1	201299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	34257138	34257138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	34257138	G	A	34257138	3	1	616	1	0	0	0	0	1	0	0	0	13210	1203	42	2	704	2	RDM1	17	34257138	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	3624738	34257138	46938072	44	36259											
MLX	6945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40720856	40720856	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	40720856	T	C	40720856	2	2	616	1	0	0	0	0	0	0	0	1	9642	1478	51	3		3	MLX	17	40720856	Silent	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	6463718	40720856	40474354	45	36260											
KCNN1	3780	broad.mit.edu	37	19	18109140	18109140	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	-	18109140	C	-	18109140	7	5	616	1	0	1	0	1	0	0	0	0	8085	726	26	0	1591	0	KCNN1	19	18109140	Frame_Shift_Del	DEL	C	TCGA-DZ-6134-01A-11D-1961-08		18109140	41019843	46	36261											
NR2C2AP	126382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	19313644	19313645	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	T	19313645	-	T	19313644	7	5	616	1	0	1	1	0	0	0	0	0	10631	1377	48	0	350	0	NR2C2AP	19	19313644	Frame_Shift_Ins	INS	-	TCGA-DZ-6134-01A-11D-1961-08	1204504	19313644	39815339	47	36262											
MLL4	8085	ucsc.edu	37	19	36228069	36228069	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	36228069	C	G	36228069	3	3	616	1	0	0	0	0	1	0	0	0	9630	747	26	4	7585	4	MLL4	19	36228069	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	16914425	36228069	22900914	48	36263											
ZNF568	374900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37441598	37441598	+	Missense_Mutation	SNP	T	T	C	rs201711551		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	37441598	T	C	37441598	3	2	616	1	0	0	0	0	1	0	0	0	18011	1435	50	3	1561	3	ZNF568	19	37441598	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	1213529	37441598	21687385	49	36264											
DHDH	27294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49447704	49447704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	49447704	T	G	49447704	3	3	616	1	0	0	0	0	1	0	0	0	4481	1841	64	5	857	5	DHDH	19	49447704	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	12006106	49447704	9681279	50	36265			1	76		2	2	25	T		4.341447e-05
DHDH	27294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49447728	49447728	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	49447728	T	A	49447728	3	1	616	1	0	0	0	0	1	0	0	0	4481	1754	61	5	881	5	DHDH	19	49447728	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	24	49447728	9681255	51	36266			1	76		2	2	25	T		4.341447e-05
ZSCAN18	65982	broad.mit.edu	37	19	58596700	58596700	+	Silent	SNP	G	G	A	rs200010643		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	A	58596700	G	A	58596700	2	1	616	1	0	0	0	0	0	0	0	1	18242	1103	39	1		1	ZSCAN18	19	58596700	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	9148972	58596700	532283	52	36267											
C20orf141	128653	ucsc.edu;bcgsc.ca	37	20	2796280	2796281	+	Nonsense_Mutation	DNP	GC	GC	TT	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	TT	2796281	GC	TT	2796280	4	4	616	1	0	0	0	0	0	1	0	0	2091	1306	46	4	363	4	C20orf141	20	2796280	Nonsense_Mutation	DNP	GC	TCGA-DZ-6134-01A-11D-1961-08		2796280	60229240	53	36268											
NINL	22981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25469911	25469912	+	Nonsense_Mutation	DNP	GC	GC	TA	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	TA	25469912	GC	TA	25469911	4	4	616	1	0	0	0	0	0	1	0	0	10427	1319	46	4	2550	4	NINL	20	25469911	Nonsense_Mutation	DNP	GC	TCGA-DZ-6134-01A-11D-1961-08	22673631	25469911	37555609	54	36269											
TP53TG5	27296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44005872	44005872	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	G	44005872	C	G	44005872	3	3	616	1	0	0	0	0	1	0	0	0	16403	912	32	4	650	4	TP53TG5	20	44005872	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	18535961	44005872	19019648	55	36270											
CHST7	56548	hgsc.bcm.edu	37	X	46434588	46434588	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	C	46434588	A	C	46434588	3	2	616	1	0	0	0	0	1	0	0	0	3411	217	8	5	1224	5	CHST7	23	46434588	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		46434588	108835972	56	36271											
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	G	2160390	C	G	2160390	3	3	617	1	0	0	0	0	1	0	0	0	14370	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		2160390	247090231	1	36272											
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85491894	85491894	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	C	85491894	G	C	85491894	2	2	617	1	0	0	0	0	0	0	0	1	9404	929	33	4		4	MCOLN3	1	85491894	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	83331504	85491894	163758727	2	36273											
LCE3D	84648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152552161	152552161	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	152552161	G	A	152552161	2	1	617	1	0	0	0	0	0	0	0	1	8679	1079	38	1		1	LCE3D	1	152552161	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	67060267	152552161	96698460	3	36274											
BCAN	63827	broad.mit.edu	37	1	156615922	156615922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	C	156615922	G	C	156615922	3	2	617	1	0	0	0	0	1	0	0	0	1345	1175	41	4	78	4	BCAN	1	156615922	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	4063761	156615922	92634699	4	36275											
SPRED2	200734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	65561771	65561771	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	-	65561771	C	-	65561771	7	5	617	1	0	1	0	1	0	0	0	0	15105	855	30	0	931	0	SPRED2	2	65561771	Frame_Shift_Del	DEL	C	TCGA-DZ-6135-01A-11D-1961-08		65561771	177637602	5	36276											
ACTG2	72	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74128513	74128513	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	C	74128513	T	C	74128513	2	2	617	1	0	0	0	0	0	0	0	1	197	1461	51	3		3	ACTG2	2	74128513	Silent	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	8566742	74128513	169070860	6	36277											
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	108994906	108994906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	C	108994906	T	C	108994906	3	2	617	1	0	0	0	0	1	0	0	0	15391	1435	50	3	115	3	SULT1C4	2	108994906	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	34866393	108994906	134204467	7	36278											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170145584	170145584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	-	170145584	A	-	170145584	7	5	617	1	0	1	0	1	0	0	0	0	8963	130	5	0	13257	0	LRP2	2	170145584	Frame_Shift_Del	DEL	A	TCGA-DZ-6135-01A-11D-1961-08	61150678	170145584	73053789	8	36279											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	78683096	78683096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	78683096	C	A	78683096	3	1	617	1	0	0	0	0	1	0	0	0	13526	565	20	4	1517	4	ROBO1	3	78683096	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		78683096	119339334	9	36280											
KIAA2018	205717	hgsc.bcm.edu	37	3	113376148	113376148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	G	113376148	T	G	113376148	3	3	617	1	0	0	0	0	1	0	0	0	8275	1850	64	5	2360	5	KIAA2018	3	113376148	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	34693052	113376148	84646282	10	36281											
SSR3	6747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	156266708	156266708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	156266708	C	A	156266708	3	1	617	1	0	0	0	0	1	0	0	0	15204	680	24	4	224	4	SSR3	3	156266708	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	42890560	156266708	41755722	11	36282											
HELQ	113510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84342848	84342848	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	G	84342848	A	G	84342848	2	3	617	1	0	0	0	0	0	0	0	1	7054	127	5	3		3	HELQ	4	84342848	Silent	SNP	A	TCGA-DZ-6135-01A-11D-1961-08		84342848	106811428	12	36283											
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78415091	78415091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	C	78415091	T	C	78415091	3	2	617	1	0	0	0	0	1	0	0	0	1425	1609	56	3	186	3	BHMT	5	78415091	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08		78415091	102500169	13	36284											
PGGT1B	5229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	114573574	114573574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	114573574	G	A	114573574	3	1	617	1	0	0	0	0	1	0	0	0	11796	1000	35	2	697	2	PGGT1B	5	114573574	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	36158483	114573574	66341686	14	36285											
WDR55	54853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140049032	140049032	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	C	140049032	T	C	140049032	2	2	617	1	0	0	0	0	0	0	0	1	17319	1461	51	3		3	WDR55	5	140049032	Silent	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	25475458	140049032	40866228	15	36286											
FGFR4	2264	broad.mit.edu;ucsc.edu	37	5	176522539	176522539	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	T	176522539	C	T	176522539	2	4	617	1	0	0	0	0	0	0	0	1	5875	680	24	2		2	FGFR4	5	176522539	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	36473507	176522539	4392721	16	36287											
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	G	45390482	C	G	45390482	3	3	617	1	0	0	0	0	1	0	0	0	13761	711	25	4	233	4	RUNX2	6	45390482	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		45390482	125724585	17	36288											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111632330	111632330	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	T	111632330	A	T	111632330	3	4	617	1	0	0	0	0	1	0	0	0	13253	449	16	5	671	5	REV3L	6	111632330	Missense_Mutation	SNP	A	TCGA-DZ-6135-01A-11D-1961-08	66241848	111632330	59482737	18	36289											
ACTB	60	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5567465	5567465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	G	5567465	A	G	5567465	3	3	617	1	0	0	0	0	1	0	0	0	193	304	11	3	89	3	ACTB	7	5567465	Missense_Mutation	SNP	A	TCGA-DZ-6135-01A-11D-1961-08		5567465	153571198	19	36290											
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	26223344	26223347	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	-	26223347	TTCT	-	26223344	7	5	617	1	0	1	0	1	0	0	0	0	10376	1596	56	0	784	0	NFE2L3	7	26223344	Frame_Shift_Del	DEL	TTCT	TCGA-DZ-6135-01A-11D-1961-08	20655879	26223344	132915319	20	36291											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	rs121913245		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	C	116423474	T	C	116423474	3	2	617	1	0	0	0	0	1	0	0	0	9492	1464	51	3	3873	3	MET	7	116423474	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	90200130	116423474	42715189	21	36292											
ARHGEF5	7984	hgsc.bcm.edu	37	7	144060273	144060273	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	C	144060273	G	C	144060273	3	2	617	1	0	0	0	0	1	0	0	0	909	1175	41	4	513	4	ARHGEF5	7	144060273	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	27636799	144060273	15078390	22	36293											
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32543270	32543270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	C	32543270	T	C	32543270	3	2	617	1	0	0	0	0	1	0	0	0	16382	1435	50	3	1888	3	TOPORS	9	32543270	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08		32543270	108670161	23	36294											
TNC	3371	hgsc.bcm.edu	37	9	117808884	117808922	+	In_Frame_Del	DEL	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	-	117808922	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	-	117808884	7	5	617	1	0	1	0	1	0	0	0	0	16282	835	29	0	1723	0	TNC	9	117808884	In_Frame_Del	DEL	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	TCGA-DZ-6135-01A-11D-1961-08	85265614	117808884	23404547	24	36295											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131361264	131361264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	T	131361264	G	T	131361264	3	4	617	1	0	0	0	0	1	0	0	0	15129	1014	35	4	3640	4	SPTAN1	9	131361264	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	13552380	131361264	9852167	25	36296											
AGPAT2	10555	bcgsc.ca	37	9	139581687	139581687	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	139581687	G	A	139581687	2	1	617	1	0	0	0	0	0	0	0	1	387	1103	39	1		1	AGPAT2	9	139581687	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	8220423	139581687	1631744	26	36297											
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6711561	6711561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	G	6711561	C	G	6711561	3	3	617	1	0	0	0	0	1	0	0	0	3329	797	28	4	5687	4	CHD4	12	6711561	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		6711561	127140334	27	36298											
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28143269	28143269	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	28143269	G	A	28143269	2	1	617	1	0	0	0	0	0	0	0	1	8873	1074	38	1		1	LNX2	13	28143269	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08		28143269	87026609	28	36299											
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	70549759	70549759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	G	70549759	C	G	70549759	3	3	617	1	0	0	0	0	1	0	0	0	8372	710	25	4	1613	4	KLHL1	13	70549759	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	42406490	70549759	44620119	29	36300											
AHNAK2	113146	ucsc.edu	37	14	105418145	105418145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	105418145	G	A	105418145	3	1	617	1	0	0	0	0	1	0	0	0	415	1203	42	2	13748	2	AHNAK2	14	105418145	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08		105418145	1931395	30	36301											
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25616649	25616649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	25616649	T	A	25616649	3	1	617	1	0	0	0	0	1	0	0	0	16891	1519	53	5	1978	5	UBE3A	15	25616649	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08		25616649	76914743	31	36302											
CCDC78	124093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	775528	775528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	T	775528	G	T	775528	3	4	617	1	0	0	0	0	1	0	0	0	2854	1261	44	4	1040	4	CCDC78	16	775528	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08		775528	89579225	32	36303											
SNX29	92017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	12618621	12618621	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	T	12618621	C	T	12618621	2	4	617	1	0	0	0	0	0	0	0	1	14911	477	17	2		2	SNX29	16	12618621	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	11843093	12618621	77736132	33	36304											
ABCC11	85320	ucsc.edu	37	16	48210875	48210875	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	48210875	G	A	48210875	2	1	617	1	0	0	0	0	0	0	0	1	51	1074	38	1		1	ABCC11	16	48210875	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	35592254	48210875	42143878	34	36305											
ODF4	146852	broad.mit.edu	37	17	8243446	8243446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	G	8243446	A	G	8243446	3	3	617	1	0	0	0	0	1	0	0	0	10840	246	9	3	79	3	ODF4	17	8243446	Missense_Mutation	SNP	A	TCGA-DZ-6135-01A-11D-1961-08		8243446	72951764	35	36306											
FAM83G	644815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18881233	18881233	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	18881233	T	A	18881233	3	1	617	1	0	0	0	0	1	0	0	0	5646	1606	56	5	733	5	FAM83G	17	18881233	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	10637787	18881233	62313977	36	36307											
CDK5R1	8851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30815101	30815101	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	T	30815101	C	T	30815101	2	4	617	1	0	0	0	0	0	0	0	1	3145	680	24	2		2	CDK5R1	17	30815101	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	11933868	30815101	50380109	37	36308											
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12060395	12060395	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	G	12060395	C	G	12060395	3	3	617	1	0	0	0	0	1	0	0	0	18116	913	32	4	1570	4	ZNF700	19	12060395	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		12060395	47068588	38	36309											
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50393785	50393785	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	T	50393785	C	T	50393785	2	4	617	1	0	0	0	0	0	0	0	1	7704	465	17	2		2	IL4I1	19	50393785	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	38333390	50393785	8735198	39	36310											
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52496292	52496292	+	Silent	SNP	C	C	A	rs146634089	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	52496292	C	A	52496292	2	1	617	1	0	0	0	0	0	0	0	1	18052	523	19	4		4	ZNF615	19	52496292	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	2102507	52496292	6632691	40	36311											
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59057198	59057198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	59057198	G	A	59057198	3	1	617	1	0	0	0	0	1	0	0	0	16514	1377	48	2	531	2	TRIM28	19	59057198	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	6560906	59057198	71785	41	36312											
KRTAP26-1	388818	hgsc.bcm.edu;broad.mit.edu	37	21	31692296	31692296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	A	31692296	G	A	31692296	3	1	617	1	0	0	0	0	1	0	0	0	8550	1116	39	1	578	1	KRTAP26-1	21	31692296	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08		31692296	16437599	42	36313											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46654232	46654232	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	T	46654232	A	T	46654232	3	4	617	1	0	0	0	0	1	0	0	0	11977	217	8	5	1777	5	PKDREJ	22	46654232	Missense_Mutation	SNP	A	TCGA-DZ-6135-01A-11D-1961-08		46654232	4650334	43	36314											
KIF1B	23095	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	10425659	10425659	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	C	10425659	G	C	10425659	3	2	618	1	0	0	0	0	1	0	0	0	8291	1001	35	4	6214	4	KIF1B	1	10425659	Missense_Mutation	SNP	G	TCGA-EU-5904-01A-11D-1669-08		10425659	238824962	1	36315											
OR10J1	26476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	159410089	159410089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	159410089	G	T	159410089	3	4	618	1	0	0	0	0	1	0	0	0	10917	1319	46	4	543	4	OR10J1	1	159410089	Missense_Mutation	SNP	G	TCGA-EU-5904-01A-11D-1669-08	148984430	159410089	89840532	2	36316											
PRG4	23572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186277944	186277944	+	Silent	SNP	C	C	G	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	G	186277944	C	G	186277944	2	3	618	1	0	0	0	0	0	0	0	1	12491	581	21	4		4	PRG4	1	186277944	Silent	SNP	C	TCGA-EU-5904-01A-11D-1669-08	26867855	186277944	62972677	3	36317											
TMCC2	9911	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205238192	205238192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	205238192	G	A	205238192	3	1	618	1	0	0	0	0	1	0	0	0	16005	1087	38	1	872	1	TMCC2	1	205238192	Missense_Mutation	SNP	G	TCGA-EU-5904-01A-11D-1669-08	18960248	205238192	44012429	4	36318											
C1orf124	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	231487063	231487063	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	G	231487063	T	G	231487063	3	3	618	1	0	0	0	0	1	0	0	0	1994	1841	64	5	478	5	C1orf124	1	231487063	Missense_Mutation	SNP	T	TCGA-EU-5904-01A-11D-1669-08	26248871	231487063	17763558	5	36319											
CCDC85A	114800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	56419911	56419911	+	Silent	SNP	C	C	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	56419911	C	T	56419911	2	4	618	1	0	0	0	0	0	0	0	1	2861	738	26	2		2	CCDC85A	2	56419911	Silent	SNP	C	TCGA-EU-5904-01A-11D-1669-08		56419911	186779462	6	36320											
GCC2	9648	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	109099526	109099526	+	Silent	SNP	C	C	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	109099526	C	T	109099526	2	4	618	1	0	0	0	0	0	0	0	1	6293	581	21	2		2	GCC2	2	109099526	Silent	SNP	C	TCGA-EU-5904-01A-11D-1669-08	52679615	109099526	134099847	7	36321											
XIRP2	129446	broad.mit.edu	37	2	168105254	168105254	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	168105254	A	A	168105254	4	1	618	1	0	0	0	0	0	1	0	0	17442	838	29	4	7382	4	XIRP2	2	168105254	Nonsense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08	59005728	168105254	75094119	8	36322											
ITGA4	3676	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	182396472	182396472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	G	182396472	A	G	182396472	3	3	618	1	0	0	0	0	1	0	0	0	7885	130	5	3	2851	3	ITGA4	2	182396472	Missense_Mutation	SNP	A	TCGA-EU-5904-01A-11D-1669-08	14291218	182396472	60802901	9	36323											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10191492	10191492	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	10191492	T	T	10191492	3	4	618	1	0	0	0	0	1	0	0	0	17174	1319	46	4	495	4	VHL	3	10191492	Missense_Mutation	SNP	G	TCGA-EU-5904-01A-11D-1669-08		10191492	187830938	10	36324											
NDUFAF3	25915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49059963	49059963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	49059963	C	A	49059963	3	1	618	1	0	0	0	0	1	0	0	0	10283	711	25	4	268	4	NDUFAF3	3	49059963	Missense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08	38868471	49059963	148962467	11	36325											
TP63	8626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	189586470	189586470	+	Missense_Mutation	SNP	C	C	T	rs147148566		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	189586470	C	T	189586470	3	4	618	1	0	0	0	0	1	0	0	0	16404	893	31	1	1170	1	TP63	3	189586470	Missense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08	140526507	189586470	8435960	12	36326											
GPR78	27201	broad.mit.edu;hgsc.bcm.edu	37	4	8583134	8583134	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	8583134	T	A	8583134	3	1	618	1	0	0	0	0	1	0	0	0	6717	1609	56	5	427	5	GPR78	4	8583134	Missense_Mutation	SNP	T	TCGA-EU-5904-01A-11D-1669-08		8583134	182571142	13	36327											
TAPT1	202018	broad.mit.edu;hgsc.bcm.edu	37	4	16165153	16165153	+	Silent	SNP	G	G	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	16165153	G	T	16165153	2	4	618	1	0	0	0	0	0	0	0	1	15566	1335	47	4		4	TAPT1	4	16165153	Silent	SNP	G	TCGA-EU-5904-01A-11D-1669-08	7582019	16165153	174989123	14	36328											
NCAPG	64151	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	17819025	17819026	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	AA	17819026	-	AA	17819025	7	5	618	1	0	1	1	0	0	0	0	0	10214	838	29	0	939	0	NCAPG	4	17819025	Frame_Shift_Ins	INS	-	TCGA-EU-5904-01A-11D-1669-08	1653872	17819025	173335251	15	36329											
PCDHGA5	56110	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140745223	140745223	+	Silent	SNP	A	A	G	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	G	140745223	A	G	140745223	2	3	618	1	0	0	0	0	0	0	0	1	11564	407	15	3		3	PCDHGA5	5	140745223	Silent	SNP	A	TCGA-EU-5904-01A-11D-1669-08		140745223	40170037	16	36330											
ALDH5A1	7915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	24528317	24528317	+	Silent	SNP	T	T	C	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	C	24528317	T	C	24528317	2	2	618	1	0	0	0	0	0	0	0	1	502	1509	53	3		3	ALDH5A1	6	24528317	Silent	SNP	T	TCGA-EU-5904-01A-11D-1669-08		24528317	146586750	17	36331											
CNTLN	54875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	17416024	17416024	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	17416024	T	A	17416024	4	1	618	1	0	0	0	0	0	1	0	0	3641	1764	61	5	3051	5	CNTLN	9	17416024	Nonsense_Mutation	SNP	T	TCGA-EU-5904-01A-11D-1669-08		17416024	123797407	18	36332											
EHMT1	79813	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	140671279	140671279	+	Silent	SNP	C	C	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	140671279	C	T	140671279	2	4	618	1	0	0	0	0	0	0	0	1	4985	639	23	1		1	EHMT1	9	140671279	Silent	SNP	C	TCGA-EU-5904-01A-11D-1669-08	123255255	140671279	542152	19	36333											
DIP2C	22982	broad.mit.edu;ucsc.edu	37	10	409240	409240	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	409240	T	T	409240	3	4	618	1	0	0	0	0	1	0	0	0	4531	246	9	5	2249	5	DIP2C	10	409240	Missense_Mutation	SNP	A	TCGA-EU-5904-01A-11D-1669-08		409240	135125507	20	36334											
APBB1IP	54518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	26789847	26789847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	26789847	A	T	26789847	3	4	618	1	0	0	0	0	1	0	0	0	760	14	1	5	270	5	APBB1IP	10	26789847	Missense_Mutation	SNP	A	TCGA-EU-5904-01A-11D-1669-08	26380607	26789847	108744900	21	36335											
NRP1	8829	broad.mit.edu;hgsc.bcm.edu	37	10	33619643	33619643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	33619643	C	A	33619643	3	1	618	1	0	0	0	0	1	0	0	0	10667	913	32	4	2605	4	NRP1	10	33619643	Missense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08	6829796	33619643	101915104	22	36336											
SC5DL	6309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	121175086	121175086	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	121175086	A	T	121175086	3	4	618	1	0	0	0	0	1	0	0	0	13879	304	11	5	233	5	SC5DL	11	121175086	Missense_Mutation	SNP	A	TCGA-EU-5904-01A-11D-1669-08		121175086	13831430	23	36337											
KLRG1	10219	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9144837	9144837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	9144837	G	A	9144837	3	1	618	1	0	0	0	0	1	0	0	0	8428	1203	42	2	124	2	KLRG1	12	9144837	Missense_Mutation	SNP	G	TCGA-EU-5904-01A-11D-1669-08		9144837	124707058	24	36338											
C12orf41	0	broad.mit.edu;ucsc.edu	37	12	49073492	49073492	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	49073492	A	A	49073492	4	1	618	1	0	0	0	0	0	1	0	0	1689	922	32	4	1134	4	C12orf41	12	49073492	Nonsense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08	39928655	49073492	84778403	25	36339											
TSFM	10102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	58190297	58190297	+	Silent	SNP	G	G	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	58190297	G	A	58190297	2	1	618	1	0	0	0	0	0	0	0	1	16627	991	35	2		2	TSFM	12	58190297	Silent	SNP	G	TCGA-EU-5904-01A-11D-1669-08	9116805	58190297	75661598	26	36340											
RCBTB2	1102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	49086880	49086880	+	Silent	SNP	T	T	C	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	C	49086880	T	C	49086880	2	2	618	1	0	0	0	0	0	0	0	1	13185	1741	61	3		3	RCBTB2	13	49086880	Silent	SNP	T	TCGA-EU-5904-01A-11D-1669-08		49086880	66082998	27	36341											
MYO16	23026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	109817265	109817265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	109817265	G	A	109817265	3	1	618	1	0	0	0	0	1	0	0	0	10071	1290	45	2	5241	2	MYO16	13	109817265	Missense_Mutation	SNP	G	TCGA-EU-5904-01A-11D-1669-08	60730385	109817265	5352613	28	36342											
LRP10	26020	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23344975	23344975	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	G	23344975	C	G	23344975	3	3	618	1	0	0	0	0	1	0	0	0	8959	797	28	4	836	4	LRP10	14	23344975	Missense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08		23344975	84004565	29	36343											
MLH3	27030	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	75515759	75515759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	G	75515759	C	G	75515759	3	3	618	1	0	0	0	0	1	0	0	0	9625	796	28	4	3809	4	MLH3	14	75515759	Missense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08	52170784	75515759	31833781	30	36344											
PPP4R4	57718	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94741786	94741786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	94741786	C	T	94741786	3	4	618	1	0	0	0	0	1	0	0	0	12415	855	30	2	2692	2	PPP4R4	14	94741786	Missense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08	19226027	94741786	12607754	31	36345											
KIAA1199	57214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	81172060	81172060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	G	81172060	A	G	81172060	3	3	618	1	0	0	0	0	1	0	0	0	8220	72	3	3	255	3	KIAA1199	15	81172060	Missense_Mutation	SNP	A	TCGA-EU-5904-01A-11D-1669-08		81172060	21359332	32	36346											
GLYR1	84656	hgsc.bcm.edu;ucsc.edu	37	16	4867698	4867698	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	-	4867698	C	-	4867698	7	5	618	1	0	1	0	1	0	0	0	0	6490	869	30	0	882	0	GLYR1	16	4867698	Frame_Shift_Del	DEL	C	TCGA-EU-5904-01A-11D-1669-08		4867698	85487055	33	36347											
HSF4	3299	broad.mit.edu	37	16	67199696	67199696	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	67199696	A	A	67199696	3	1	618	1	0	0	0	0	1	0	0	0	7405	710	25	4	317	4	HSF4	16	67199696	Missense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08	62331998	67199696	23155057	34	36348											
CIRH1A	84916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	69199341	69199341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	G	69199341	C	G	69199341	3	3	618	1	0	0	0	0	1	0	0	0	3436	681	24	4	1799	4	CIRH1A	16	69199341	Missense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08	1999645	69199341	21155412	35	36349											
KIAA0100	9703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	26961748	26961748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	C	26961748	G	C	26961748	3	2	618	1	0	0	0	0	1	0	0	0	8161	942	33	4	3946	4	KIAA0100	17	26961748	Missense_Mutation	SNP	G	TCGA-EU-5904-01A-11D-1669-08		26961748	54233462	36	36350											
ROCK1	6093	broad.mit.edu	37	18	18535179	18535179	+	Silent	SNP	G	A	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	18535179	A	A	18535179	2	1	618	1	0	0	0	0	0	0	0	1	13530	1219	43	2		2	ROCK1	18	18535179	Silent	SNP	G	TCGA-EU-5904-01A-11D-1669-08		18535179	59542069	37	36351											
ATP4A	495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36046491	36046491	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	G	36046491	C	G	36046491	3	3	618	1	0	0	0	0	1	0	0	0	1145	869	30	4	1135	4	ATP4A	19	36046491	Missense_Mutation	SNP	C	TCGA-EU-5904-01A-11D-1669-08		36046491	23082492	38	36352											
TUBA8	51807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	18609612	18609612	+	Silent	SNP	C	C	A	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	A	18609612	C	A	18609612	2	1	618	1	0	0	0	0	0	0	0	1	16762	639	23	4		4	TUBA8	22	18609612	Silent	SNP	C	TCGA-EU-5904-01A-11D-1669-08		18609612	32694954	39	36353											
PI4KA	5297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21115600	21115600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	C	21115600	T	C	21115600	3	2	618	1	0	0	0	0	1	0	0	0	11880	1667	58	3	3657	3	PI4KA	22	21115600	Missense_Mutation	SNP	T	TCGA-EU-5904-01A-11D-1669-08	2505988	21115600	30188966	40	36354											
XPNPEP2	7512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	128895243	128895243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	T	128895243	G	T	128895243	3	4	618	1	0	0	0	0	1	0	0	0	17455	1377	48	4	1660	4	XPNPEP2	23	128895243	Missense_Mutation	SNP	G	TCGA-EU-5904-01A-11D-1669-08		128895243	26375317	41	36355											
FAM58A	92002	broad.mit.edu;hgsc.bcm.edu	37	X	152860113	152860113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5904-01A-11D-1669-08	TCGA-EU-5904-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b13e89f1-683b-4261-94a1-e371d797237f	c4f88bd8-ef81-4eee-8ff3-8320fa1d4442	C	152860113	G	C	152860113	3	2	618	1	0	0	0	0	1	0	0	0	5597	1219	43	4	437	4	FAM58A	23	152860113	Missense_Mutation	SNP	G	TCGA-EU-5904-01A-11D-1669-08	23964870	152860113	2410447	42	36356											
PHACTR4	65979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	28785764	28785764	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	28785764	C	A	28785764	4	1	619	1	0	0	0	0	0	1	0	0	11819	838	29	4	241	4	PHACTR4	1	28785764	Nonsense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08		28785764	220464857	1	36357											
ZMYM1	79830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35579780	35579780	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	35579780	A	T	35579780	3	4	619	1	0	0	0	0	1	0	0	0	17711	11	1	5	2383	5	ZMYM1	1	35579780	Missense_Mutation	SNP	A	TCGA-EU-5905-01A-11D-1669-08	6794016	35579780	213670841	2	36358											
GBP1	2633	broad.mit.edu;hgsc.bcm.edu	37	1	89525013	89525013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	89525013	T	C	89525013	3	2	619	1	0	0	0	0	1	0	0	0	6280	1406	49	3	1395	3	GBP1	1	89525013	Missense_Mutation	SNP	T	TCGA-EU-5905-01A-11D-1669-08	53945233	89525013	159725608	3	36359											
BTBD8	284697	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	92554272	92554272	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	92554272	T	G	92554272	3	3	619	1	0	0	0	0	1	0	0	0	1549	1783	62	5	173	5	BTBD8	1	92554272	Missense_Mutation	SNP	T	TCGA-EU-5905-01A-11D-1669-08	3029259	92554272	156696349	4	36360											
PRUNE	58497	hgsc.bcm.edu;ucsc.edu	37	1	150981137	150981138	+	Frame_Shift_Ins	INS	-	-	TGCT	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	TGCT	150981138	-	TGCT	150981137	7	5	619	1	0	1	1	0	0	0	0	0	12650	797	28	0	31	0	PRUNE	1	150981137	Frame_Shift_Ins	INS	-	TCGA-EU-5905-01A-11D-1669-08	58426865	150981137	98269484	5	36361											
ADAMTS4	9507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	161166010	161166010	+	Silent	SNP	A	A	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	161166010	A	T	161166010	2	4	619	1	0	0	0	0	0	0	0	1	268	126	5	5		5	ADAMTS4	1	161166010	Silent	SNP	A	TCGA-EU-5905-01A-11D-1669-08	10184873	161166010	88084611	6	36362											
CCT4	10575	hgsc.bcm.edu;ucsc.edu	37	2	62104113	62104114	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	62104114	-	T	62104113	7	5	619	1	0	1	1	0	0	0	0	0	2957	913	32	0	932	0	CCT4	2	62104113	Frame_Shift_Ins	INS	-	TCGA-EU-5905-01A-11D-1669-08		62104113	181095260	7	36363											
MPHOSPH10	10199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	71361866	71361866	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	-	71361866	T	-	71361866	7	5	619	1	0	1	0	1	0	0	0	0	9732	1725	60	0	1051	0	MPHOSPH10	2	71361866	Frame_Shift_Del	DEL	T	TCGA-EU-5905-01A-11D-1669-08	9257753	71361866	171837507	8	36364	469	2									
MPHOSPH10	10199	hgsc.bcm.edu	37	2	71361870	71361870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	71361870	A	C	71361870	3	2	619	1	0	0	0	0	1	0	0	0	9732	359	13	5	1055	5	MPHOSPH10	2	71361870	Missense_Mutation	SNP	A	TCGA-EU-5905-01A-11D-1669-08	4	71361870	171837503	9	36365	469	2									
FIGN	55137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	164466509	164466509	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	164466509	C	G	164466509	3	3	619	1	0	0	0	0	1	0	0	0	5898	710	25	4	450	4	FIGN	2	164466509	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	93104639	164466509	78732864	10	36366											
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188260	10188260	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	-	10188260	T	-	10188260	7	5	619	1	0	1	0	1	0	0	0	0	17174	1490	52	0	409	0	VHL	3	10188260	Frame_Shift_Del	DEL	T	TCGA-EU-5905-01A-11D-1669-08		10188260	187834170	11	36367											
ACVR2B	93	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38519652	38519652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	38519652	A	G	38519652	3	3	619	1	0	0	0	0	1	0	0	0	224	275	10	3	405	3	ACVR2B	3	38519652	Missense_Mutation	SNP	A	TCGA-EU-5905-01A-11D-1669-08	28331392	38519652	159502778	12	36368											
LMOD3	56203	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	69168594	69168595	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	69168595	-	T	69168594	7	5	619	1	0	1	1	0	0	0	0	0	8865	1368	48	0	778	0	LMOD3	3	69168594	Frame_Shift_Ins	INS	-	TCGA-EU-5905-01A-11D-1669-08	30648942	69168594	128853836	13	36369											
CCDC37	348807	broad.mit.edu;hgsc.bcm.edu	37	3	126142411	126142411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	126142411	C	A	126142411	3	1	619	1	0	0	0	0	1	0	0	0	2811	796	28	4	1256	4	CCDC37	3	126142411	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	56973817	126142411	71880019	14	36370											
STAG1	10274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	136170989	136170989	+	Silent	SNP	C	C	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	136170989	C	T	136170989	2	4	619	1	0	0	0	0	0	0	0	1	15254	753	26	2		2	STAG1	3	136170989	Silent	SNP	C	TCGA-EU-5905-01A-11D-1669-08	10028578	136170989	61851441	15	36371											
PDZD2	23037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32059357	32059357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	32059357	G	T	32059357	3	4	619	1	0	0	0	0	1	0	0	0	11708	1174	41	4	2259	4	PDZD2	5	32059357	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08		32059357	148855903	16	36372											
DDX4	54514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	55056036	55056036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	55056036	G	A	55056036	3	1	619	1	0	0	0	0	1	0	0	0	4362	1290	45	2	146	2	DDX4	5	55056036	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08	22996679	55056036	125859224	17	36373											
PCDH1	5097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141248528	141248528	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	141248528	G	T	141248528	4	4	619	1	0	0	0	0	0	1	0	0	11513	1294	45	4	3304	4	PCDH1	5	141248528	Nonsense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08	86192492	141248528	39666732	18	36374	470	2									
PCDH1	5097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	141248529	141248529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	141248529	A	T	141248529	3	4	619	1	0	0	0	0	1	0	0	0	11513	304	11	5	3305	5	PCDH1	5	141248529	Missense_Mutation	SNP	A	TCGA-EU-5905-01A-11D-1669-08	1	141248529	39666731	19	36375	470	2									
CUTA	51596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	33384503	33384503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	33384503	T	C	33384503	3	2	619	1	0	0	0	0	1	0	0	0	4064	1580	55	3	79	3	CUTA	6	33384503	Missense_Mutation	SNP	T	TCGA-EU-5905-01A-11D-1669-08		33384503	137730564	20	36376											
GNMT	27232	hgsc.bcm.edu;ucsc.edu	37	6	42929965	42929969	+	Frame_Shift_Del	DEL	GCTGG	GCTGG	-	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	GCTGG	GCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	-	42929969	GCTGG	-	42929965	7	5	619	1	0	1	0	1	0	0	0	0	6547	1319	46	0	228	0	GNMT	6	42929965	Frame_Shift_Del	DEL	GCTGG	TCGA-EU-5905-01A-11D-1669-08	9545462	42929965	128185102	21	36377											
SGK1	6446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	134494169	134494169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	134494169	C	G	134494169	3	3	619	1	0	0	0	0	1	0	0	0	14220	594	21	4	782	4	SGK1	6	134494169	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	91564204	134494169	36620898	22	36378											
MYB	4602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	135516962	135516962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	135516962	G	A	135516962	3	1	619	1	0	0	0	0	1	0	0	0	10014	1029	36	2	1059	2	MYB	6	135516962	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08	1022793	135516962	35598105	23	36379											
BCLAF1	9774	broad.mit.edu;hgsc.bcm.edu	37	6	136597333	136597333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	136597333	G	T	136597333	3	4	619	1	0	0	0	0	1	0	0	0	1383	1020	36	4	1468	4	BCLAF1	6	136597333	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08	1080371	136597333	34517734	24	36380											
RAB32	10981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	146865253	146865253	+	Silent	SNP	C	C	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	146865253	C	T	146865253	2	4	619	1	0	0	0	0	0	0	0	1	12934	874	31	1		1	RAB32	6	146865253	Silent	SNP	C	TCGA-EU-5905-01A-11D-1669-08	10267920	146865253	24249814	25	36381											
WBSCR17	64409	broad.mit.edu;ucsc.edu	37	7	71175760	71175760	+	Silent	SNP	C	A	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	71175760	A	A	71175760	2	1	619	1	0	0	0	0	0	0	0	1	17276	581	21	4		4	WBSCR17	7	71175760	Silent	SNP	C	TCGA-EU-5905-01A-11D-1669-08		71175760	87962903	26	36382											
SGK223	157285	broad.mit.edu	37	8	8175907	8175907	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	8175907	A	A	8175907	3	1	619	1	0	0	0	0	1	0	0	0	14223	624	22	4	234	4	SGK223	8	8175907	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08		8175907	138188115	27	36383											
INTS9	55756	broad.mit.edu;ucsc.edu	37	8	28625776	28625776	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	28625776	G	G	28625776	3	3	619	1	0	0	0	0	1	0	0	0	7792	739	26	4	116	4	INTS9	8	28625776	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	20449869	28625776	117738246	28	36384											
CPNE3	8895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	87568470	87568470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	87568470	G	C	87568470	3	2	619	1	0	0	0	0	1	0	0	0	3815	1020	36	4	1449	4	CPNE3	8	87568470	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08	58942694	87568470	58795552	29	36385											
UBR5	51366	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	103327008	103327008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	103327008	C	T	103327008	3	4	619	1	0	0	0	0	1	0	0	0	16917	710	25	2	6721	2	UBR5	8	103327008	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	15758538	103327008	43037014	30	36386											
KCNQ3	3786	hgsc.bcm.edu	37	8	133492523	133492523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	133492523	C	G	133492523	3	3	619	1	0	0	0	0	1	0	0	0	8091	623	22	4	2421	4	KCNQ3	8	133492523	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	30165515	133492523	12871499	31	36387											
ZNF79	7633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130206351	130206351	+	Silent	SNP	T	T	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	130206351	T	C	130206351	2	2	619	1	0	0	0	0	0	0	0	1	18173	1567	55	3		3	ZNF79	9	130206351	Silent	SNP	T	TCGA-EU-5905-01A-11D-1669-08		130206351	11007080	32	36388											
TBC1D13	54662	hgsc.bcm.edu;ucsc.edu	37	9	131550656	131550656	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	-	131550656	T	-	131550656	7	5	619	1	0	1	0	1	0	0	0	0	15614	1490	52	0	73	0	TBC1D13	9	131550656	Frame_Shift_Del	DEL	T	TCGA-EU-5905-01A-11D-1669-08	1344305	131550656	9662775	33	36389											
GPSM1	26086	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	139250844	139250844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	139250844	A	T	139250844	3	4	619	1	0	0	0	0	1	0	0	0	6741	217	8	5	1880	5	GPSM1	9	139250844	Missense_Mutation	SNP	A	TCGA-EU-5905-01A-11D-1669-08	7700188	139250844	1962587	34	36390											
TMEM203	94107	broad.mit.edu;hgsc.bcm.edu	37	9	140099456	140099456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	140099456	C	A	140099456	3	1	619	1	0	0	0	0	1	0	0	0	16140	808	28	4	3	4	TMEM203	9	140099456	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	848612	140099456	1113975	35	36391											
ZNF518A	9849	hgsc.bcm.edu;ucsc.edu	37	10	97917981	97917981	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	97917981	A	C	97917981	3	2	619	1	0	0	0	0	1	0	0	0	17974	69	3	5	1904	5	ZNF518A	10	97917981	Missense_Mutation	SNP	A	TCGA-EU-5905-01A-11D-1669-08		97917981	37616766	36	36392											
INPP5F	22876	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	121567515	121567515	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	121567515	G	C	121567515	3	2	619	1	0	0	0	0	1	0	0	0	7765	1377	48	4	1562	4	INPP5F	10	121567515	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08	23649534	121567515	13967232	37	36393											
ESAM	90952	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124623594	124623594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	124623594	C	A	124623594	3	1	619	1	0	0	0	0	1	0	0	0	5249	507	18	4	55	4	ESAM	11	124623594	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08		124623594	10382922	38	36394											
PDE3A	5139	broad.mit.edu;hgsc.bcm.edu	37	12	20832968	20832968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	20832968	G	T	20832968	3	4	619	1	0	0	0	0	1	0	0	0	11644	933	33	4	3251	4	PDE3A	12	20832968	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08		20832968	113018927	39	36395											
KRT71	112802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	52940112	52940112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	52940112	T	A	52940112	3	1	619	1	0	0	0	0	1	0	0	0	8491	1551	54	5	300	5	KRT71	12	52940112	Missense_Mutation	SNP	T	TCGA-EU-5905-01A-11D-1669-08	32107144	52940112	80911783	40	36396											
ACSS3	79611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	81536908	81536908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	81536908	G	A	81536908	3	1	619	1	0	0	0	0	1	0	0	0	190	1261	44	2	821	2	ACSS3	12	81536908	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08	28596796	81536908	52314987	41	36397											
MSI1	4440	broad.mit.edu	37	12	120805861	120805861	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	120805861	G	G	120805861	3	3	619	1	0	0	0	0	1	0	0	0	9882	623	22	4	915	4	MSI1	12	120805861	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	39268953	120805861	13046034	42	36398											
TINF2	26277	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24709719	24709719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	24709719	C	G	24709719	3	3	619	1	0	0	0	0	1	0	0	0	15935	797	28	4	408	4	TINF2	14	24709719	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08		24709719	82639821	43	36399											
ZNF646	9726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31090216	31090216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	31090216	T	A	31090216	3	1	619	1	0	0	0	0	1	0	0	0	18074	1809	63	5	2573	5	ZNF646	16	31090216	Missense_Mutation	SNP	T	TCGA-EU-5905-01A-11D-1669-08		31090216	59264537	44	36400											
FUS	2521	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	31201624	31201624	+	Silent	SNP	T	T	C	rs76570520	alternate_allele	TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	31201624	T	C	31201624	2	2	619	1	0	0	0	0	0	0	0	1	6107	1683	59	3		3	FUS	16	31201624	Silent	SNP	T	TCGA-EU-5905-01A-11D-1669-08	111408	31201624	59153129	45	36401											
ZNF423	23090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	49670001	49670001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	49670001	C	T	49670001	3	4	619	1	0	0	0	0	1	0	0	0	17910	768	27	1	812	1	ZNF423	16	49670001	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	18468377	49670001	40684752	46	36402											
PHLPP2	23035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	71683569	71683569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	71683569	T	C	71683569	3	2	619	1	0	0	0	0	1	0	0	0	11862	1763	61	3	779	3	PHLPP2	16	71683569	Missense_Mutation	SNP	T	TCGA-EU-5905-01A-11D-1669-08	22013568	71683569	18671184	47	36403											
PRKAR1A	5573	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	66525084	66525084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	66525084	G	C	66525084	3	2	619	1	0	0	0	0	1	0	0	0	12513	933	33	4	873	4	PRKAR1A	17	66525084	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08		66525084	14670126	48	36404											
ACTG1	71	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	79477756	79477756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	79477756	T	C	79477756	3	2	619	1	0	0	0	0	1	0	0	0	196	1667	58	3	43	3	ACTG1	17	79477756	Missense_Mutation	SNP	T	TCGA-EU-5905-01A-11D-1669-08	12952672	79477756	1717454	49	36405											
DPP9	91039	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	4704158	4704158	+	Silent	SNP	G	G	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	4704158	G	A	4704158	2	1	619	1	0	0	0	0	0	0	0	1	4735	1306	46	2		2	DPP9	19	4704158	Silent	SNP	G	TCGA-EU-5905-01A-11D-1669-08		4704158	54424825	50	36406											
DAND5	199699	broad.mit.edu;ucsc.edu	37	19	13084386	13084386	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	13084386	G	G	13084386	3	3	619	1	0	0	0	0	1	0	0	0	4232	652	23	4	514	4	DAND5	19	13084386	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	8380228	13084386	46044597	51	36407											
MYO9B	4650	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	17212688	17212688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	17212688	G	A	17212688	3	1	619	1	0	0	0	0	1	0	0	0	10092	971	34	2	163	2	MYO9B	19	17212688	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08	4128302	17212688	41916295	52	36408											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	38948875	38948875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	38948875	A	G	38948875	3	3	619	1	0	0	0	0	1	0	0	0	13781	130	5	3	2180	3	RYR1	19	38948875	Missense_Mutation	SNP	A	TCGA-EU-5905-01A-11D-1669-08	21736187	38948875	20180108	53	36409											
CSRP2BP	57325	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	18125954	18125954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	18125954	G	T	18125954	3	4	619	1	0	0	0	0	1	0	0	0	3970	1348	47	4	343	4	CSRP2BP	20	18125954	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08		18125954	44899566	54	36410											
LSM14B	149986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	60701436	60701436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	G	60701436	A	G	60701436	3	3	619	1	0	0	0	0	1	0	0	0	9062	391	14	3	378	3	LSM14B	20	60701436	Missense_Mutation	SNP	A	TCGA-EU-5905-01A-11D-1669-08	42575482	60701436	2324084	55	36411											
SLCO4A1	28231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	61300316	61300316	+	Silent	SNP	G	G	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	61300316	G	T	61300316	2	4	619	1	0	0	0	0	0	0	0	1	14742	1277	45	4		4	SLCO4A1	20	61300316	Silent	SNP	G	TCGA-EU-5905-01A-11D-1669-08	598880	61300316	1725204	56	36412											
KCNQ2	3785	broad.mit.edu	37	20	62050979	62050979	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	62050979	A	A	62050979	3	1	619	1	0	0	0	0	1	0	0	0	8090	1145	40	1	1348	1	KCNQ2	20	62050979	Missense_Mutation	SNP	G	TCGA-EU-5905-01A-11D-1669-08	750663	62050979	974541	57	36413											
TIAM1	7074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	32624302	32624302	+	Silent	SNP	C	C	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	32624302	C	A	32624302	2	1	619	1	0	0	0	0	0	0	0	1	15902	610	22	4		4	TIAM1	21	32624302	Silent	SNP	C	TCGA-EU-5905-01A-11D-1669-08		32624302	15505593	58	36414	471	2									
TIAM1	7074	hgsc.bcm.edu;ucsc.edu	37	21	32624303	32624303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	32624303	C	A	32624303	3	1	619	1	0	0	0	0	1	0	0	0	15902	652	23	4	3705	4	TIAM1	21	32624303	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	1	32624303	15505592	59	36415	471	2									
GCFC1	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34120909	34120909	+	Silent	SNP	T	T	C	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	C	34120909	T	C	34120909	2	2	619	1	0	0	0	0	0	0	0	1	6296	1490	52	3		3	GCFC1	21	34120909	Silent	SNP	T	TCGA-EU-5905-01A-11D-1669-08	1496606	34120909	14008986	60	36416											
MCM3AP	8888	broad.mit.edu;ucsc.edu	37	21	47705106	47705106	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	47705106	A	A	47705106	3	1	619	1	0	0	0	0	1	0	0	0	9395	884	31	4	5959	4	MCM3AP	21	47705106	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08	13584197	47705106	424789	61	36417											
CCNB3	85417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	50054338	50054338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	A	50054338	C	A	50054338	3	1	619	1	0	0	0	0	1	0	0	0	2916	623	22	4	3183	4	CCNB3	23	50054338	Missense_Mutation	SNP	C	TCGA-EU-5905-01A-11D-1669-08		50054338	105216222	62	36418											
VGLL1	51442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	135638638	135638638	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EU-5905-01A-11D-1669-08	TCGA-EU-5905-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	091c18b6-bfc2-4353-9eba-ebc46c2c18c5	75193f95-bb70-4f8b-90df-9c2ff7df4f8d	T	135638638	A	T	135638638	3	4	619	1	0	0	0	0	1	0	0	0	17170	98	4	5	731	5	VGLL1	23	135638638	Missense_Mutation	SNP	A	TCGA-EU-5905-01A-11D-1669-08	85584300	135638638	19631922	63	36419											
RSC1A1	6248	hgsc.bcm.edu;ucsc.edu	37	1	15987206	15987206	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	-	15987206	T	-	15987206	7	5	620	1	0	1	0	1	0	0	0	0	13711	1596	56	0	845	0	RSC1A1	1	15987206	Frame_Shift_Del	DEL	T	TCGA-EU-5906-01A-11D-1669-08		15987206	233263415	1	36420											
C8A	731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	57351710	57351710	+	Silent	SNP	A	A	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	57351710	A	T	57351710	2	4	620	1	0	0	0	0	0	0	0	1	2418	175	7	5		5	C8A	1	57351710	Silent	SNP	A	TCGA-EU-5906-01A-11D-1669-08	41364504	57351710	191898911	2	36421											
CTH	1491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	70896063	70896063	+	Missense_Mutation	SNP	G	G	A	rs147044875		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	70896063	G	A	70896063	3	1	620	1	0	0	0	0	1	0	0	0	4011	1145	40	1	736	1	CTH	1	70896063	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	13544353	70896063	178354558	3	36422											
C1orf31	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	234509989	234509989	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	234509989	G	T	234509989	4	4	620	1	0	0	0	0	0	1	0	0	2039	1001	35	4	142	4	C1orf31	1	234509989	Nonsense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	163613926	234509989	14740632	4	36423											
MAP4K4	9448	broad.mit.edu	37	2	102486844	102486844	+	Silent	SNP	C	G	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	102486844	G	G	102486844	2	3	620	1	0	0	0	0	0	0	0	1	9269	610	22	4		4	MAP4K4	2	102486844	Silent	SNP	C	TCGA-EU-5906-01A-11D-1669-08		102486844	140712529	5	36424											
ZEB2	9839	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	145157472	145157472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	145157472	C	G	145157472	3	3	620	1	0	0	0	0	1	0	0	0	17636	565	20	4	2374	4	ZEB2	2	145157472	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08	42670628	145157472	98041901	6	36425											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179422748	179422748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	179422748	G	C	179422748	3	2	620	1	0	0	0	0	1	0	0	0	16747	1136	40	4	20786	4	TTN	2	179422748	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	34265276	179422748	63776625	7	36426											
TTN	7273	broad.mit.edu;ucsc.edu	37	2	179439235	179439235	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	179439235	T	T	179439235	3	4	620	1	0	0	0	0	1	0	0	0	16747	1029	36	4	36503	4	TTN	2	179439235	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	16487	179439235	63760138	8	36427											
CUL3	8452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	225342980	225342980	+	Silent	SNP	T	T	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	225342980	T	C	225342980	2	2	620	1	0	0	0	0	0	0	0	1	4058	1606	56	3		3	CUL3	2	225342980	Silent	SNP	T	TCGA-EU-5906-01A-11D-1669-08	45903745	225342980	17856393	9	36428											
GBX2	2637	broad.mit.edu	37	2	237076427	237076435	+	In_Frame_Del	DEL	GGCGGCGGC	-	-	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	GGCGGCGGC	GGCGGCGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	-	237076435	-	-	237076427	7	5	620	1	0	1	0	1	0	0	0	0	6288	1232	43	0	866	0	GBX2	2	237076427	In_Frame_Del	DEL	GGCGGCGGC	TCGA-EU-5906-01A-11D-1669-08	11733447	237076427	6122946	10	36429											
VHL	7428	hgsc.bcm.edu	37	3	10191572	10191572	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	10191572	G	C	10191572	3	2	620	1	0	0	0	0	1	0	0	0	17174	1175	41	4	575	4	VHL	3	10191572	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08		10191572	187830858	11	36430											
OXSM	54995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	25835880	25835880	+	Silent	SNP	T	T	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	25835880	T	G	25835880	2	3	620	1	0	0	0	0	0	0	0	1	11342	1770	62	5		5	OXSM	3	25835880	Silent	SNP	T	TCGA-EU-5906-01A-11D-1669-08	15644308	25835880	172186550	12	36431											
USP4	7375	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49337921	49337921	+	Silent	SNP	G	G	A	rs142071789	alternate_allele	TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	49337921	G	A	49337921	2	1	620	1	0	0	0	0	0	0	0	1	17083	1252	44	2		2	USP4	3	49337921	Silent	SNP	G	TCGA-EU-5906-01A-11D-1669-08	23502041	49337921	148684509	13	36432											
FILIP1L	11259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	99568696	99568696	+	Silent	SNP	A	A	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	99568696	A	G	99568696	2	3	620	1	0	0	0	0	0	0	0	1	5902	330	12	3		3	FILIP1L	3	99568696	Silent	SNP	A	TCGA-EU-5906-01A-11D-1669-08	50230775	99568696	98453734	14	36433											
POLQ	10721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	121208546	121208546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	121208546	A	T	121208546	3	4	620	1	0	0	0	0	1	0	0	0	12215	130	5	5	4600	5	POLQ	3	121208546	Missense_Mutation	SNP	A	TCGA-EU-5906-01A-11D-1669-08	21639850	121208546	76813884	15	36434											
GABRG1	2565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	46043110	46043110	+	Silent	SNP	C	C	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	46043110	C	T	46043110	2	4	620	1	0	0	0	0	0	0	0	1	6178	854	30	2		2	GABRG1	4	46043110	Silent	SNP	C	TCGA-EU-5906-01A-11D-1669-08		46043110	145111166	16	36435											
TEC	100124696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	48170607	48170607	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	48170607	T	G	48170607	3	3	620	1	0	0	0	0	1	0	0	0	15754	1609	56	5	1456	5	TEC	4	48170607	Missense_Mutation	SNP	T	TCGA-EU-5906-01A-11D-1669-08	2127497	48170607	142983669	17	36436											
SPINK2	6691	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	57677912	57677912	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	57677912	G	C	57677912	3	2	620	1	0	0	0	0	1	0	0	0	15072	1232	43	4	114	4	SPINK2	4	57677912	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	9507305	57677912	133476364	18	36437											
ADAMTS12	81792	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	33637849	33637849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	33637849	G	C	33637849	3	2	620	1	0	0	0	0	1	0	0	0	257	1348	47	4	3115	4	ADAMTS12	5	33637849	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08		33637849	147277411	19	36438											
ERBB2IP	55914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	65350483	65350483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	65350483	G	A	65350483	3	1	620	1	0	0	0	0	1	0	0	0	5209	971	34	2	3411	2	ERBB2IP	5	65350483	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	31712634	65350483	115564777	20	36439											
SERINC5	256987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	79473191	79473191	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	79473191	C	G	79473191	3	3	620	1	0	0	0	0	1	0	0	0	14096	623	22	4	1056	4	SERINC5	5	79473191	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08	14122708	79473191	101442069	21	36440											
CSNK1A1	1452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	148904678	148904678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	148904678	C	A	148904678	3	1	620	1	0	0	0	0	1	0	0	0	3952	797	28	4	846	4	CSNK1A1	5	148904678	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08	69431487	148904678	32010582	22	36441											
SLC36A1	206358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	150856274	150856274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	150856274	G	A	150856274	3	1	620	1	0	0	0	0	1	0	0	0	14606	971	34	2	976	2	SLC36A1	5	150856274	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	1951596	150856274	30058986	23	36442											
ADAMTS2	9509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	178557016	178557016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	178557016	C	T	178557016	3	4	620	1	0	0	0	0	1	0	0	0	265	623	22	2	1289	2	ADAMTS2	5	178557016	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08	27700742	178557016	2358244	24	36443											
GFOD1	54438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	13365468	13365468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	13365468	A	G	13365468	3	3	620	1	0	0	0	0	1	0	0	0	6350	188	7	3	496	3	GFOD1	6	13365468	Missense_Mutation	SNP	A	TCGA-EU-5906-01A-11D-1669-08		13365468	157749599	25	36444											
CDC40	51362	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	110501714	110501714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	110501714	G	A	110501714	3	1	620	1	0	0	0	0	1	0	0	0	3072	1174	41	2	69	2	CDC40	6	110501714	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	97136246	110501714	60613353	26	36445											
AKAP12	9590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	151671390	151671390	+	Missense_Mutation	SNP	C	C	A	rs143476871	alternate_allele	TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	151671390	C	A	151671390	3	1	620	1	0	0	0	0	1	0	0	0	448	768	27	4	1903	4	AKAP12	6	151671390	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08	41169676	151671390	19443677	27	36446											
INTS1	26173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	1523722	1523722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	1523722	C	A	1523722	3	1	620	1	0	0	0	0	1	0	0	0	7782	536	19	4	3322	4	INTS1	7	1523722	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08		1523722	157614941	28	36447											
ANKIB1	54467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92027037	92027038	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	-	92027038	AT	-	92027037	7	5	620	1	0	1	0	1	0	0	0	0	630	347	12	0	2466	0	ANKIB1	7	92027037	Frame_Shift_Del	DEL	AT	TCGA-EU-5906-01A-11D-1669-08	90503315	92027037	67111626	29	36448											
GPR85	54329	broad.mit.edu	37	7	112724827	112724827	+	Translation_Start_Site	SNP	T	C	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	112724827	C	C	112724827	1	2	620	1	0	0	0	0	0	0	0	0	6722	1421	49	3		3	GPR85	7	112724827	Translation_Start_Site	SNP	T	TCGA-EU-5906-01A-11D-1669-08	20697790	112724827	46413836	30	36449											
NUDCD1	84955	hgsc.bcm.edu;ucsc.edu	37	8	110346160	110346161	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	-	110346161	AG	-	110346160	7	5	620	1	0	1	0	1	0	0	0	0	10729	72	3	0	1746	0	NUDCD1	8	110346160	Frame_Shift_Del	DEL	AG	TCGA-EU-5906-01A-11D-1669-08		110346160	36017862	31	36450											
WISP1	8840	hgsc.bcm.edu;ucsc.edu	37	8	134233012	134233013	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	-	134233013	TG	-	134233012	7	5	620	1	0	1	0	1	0	0	0	0	17384	1580	55	0	548	0	WISP1	8	134233012	Frame_Shift_Del	DEL	TG	TCGA-EU-5906-01A-11D-1669-08	23886852	134233012	12131010	32	36451											
UBQLN1	29979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	86279973	86279973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	86279973	C	T	86279973	3	4	620	1	0	0	0	0	1	0	0	0	16908	797	28	2	361	2	UBQLN1	9	86279973	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08		86279973	54933458	33	36452											
NOL8	55035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95062258	95062258	+	Silent	SNP	G	G	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	95062258	G	C	95062258	2	2	620	1	0	0	0	0	0	0	0	1	10534	929	33	4		4	NOL8	9	95062258	Silent	SNP	G	TCGA-EU-5906-01A-11D-1669-08	8782285	95062258	46151173	34	36453											
BAAT	570	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	104130484	104130484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	104130484	T	A	104130484	3	1	620	1	0	0	0	0	1	0	0	0	1280	1406	49	5	677	5	BAAT	9	104130484	Missense_Mutation	SNP	T	TCGA-EU-5906-01A-11D-1669-08	9068226	104130484	37082947	35	36454											
SCAI	286205	broad.mit.edu;hgsc.bcm.edu	37	9	127789180	127789180	+	Silent	SNP	T	T	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	127789180	T	G	127789180	2	3	620	1	0	0	0	0	0	0	0	1	13882	1451	51	5		5	SCAI	9	127789180	Silent	SNP	T	TCGA-EU-5906-01A-11D-1669-08	23658696	127789180	13424251	36	36455											
UBE2D1	7321	broad.mit.edu;hgsc.bcm.edu	37	10	60124536	60124536	+	Silent	SNP	T	T	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	60124536	T	A	60124536	2	1	620	1	0	0	0	0	0	0	0	1	16860	1596	56	5		5	UBE2D1	10	60124536	Silent	SNP	T	TCGA-EU-5906-01A-11D-1669-08		60124536	75410211	37	36456											
ANK3	288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	61835232	61835232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	61835232	A	G	61835232	3	3	620	1	0	0	0	0	1	0	0	0	622	333	12	3	8067	3	ANK3	10	61835232	Missense_Mutation	SNP	A	TCGA-EU-5906-01A-11D-1669-08	1710696	61835232	73699515	38	36457											
CYP2E1	1571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	135347393	135347393	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	135347393	A	C	135347393	3	2	620	1	0	0	0	0	1	0	0	0	4172	304	11	5	981	5	CYP2E1	10	135347393	Missense_Mutation	SNP	A	TCGA-EU-5906-01A-11D-1669-08	73512161	135347393	187354	39	36458											
NUP98	4928	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	3797242	3797242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	3797242	G	A	3797242	3	1	620	1	0	0	0	0	1	0	0	0	10780	1261	44	2	5225	2	NUP98	11	3797242	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08		3797242	131209274	40	36459											
P2RX3	5024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	57117325	57117325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	57117325	G	A	57117325	3	1	620	1	0	0	0	0	1	0	0	0	11348	1174	41	2	684	2	P2RX3	11	57117325	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	53320083	57117325	77889191	41	36460											
ALDH3B1	221	broad.mit.edu;hgsc.bcm.edu	37	11	67789230	67789230	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	67789230	C	G	67789230	3	3	620	1	0	0	0	0	1	0	0	0	499	594	21	4	860	4	ALDH3B1	11	67789230	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08	10671905	67789230	67217286	42	36461											
PRB3	5544	broad.mit.edu	37	12	11420500	11420500	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	11420500	T	T	11420500	3	4	620	1	0	0	0	0	1	0	0	0	12454	1348	47	4	254	4	PRB3	12	11420500	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08		11420500	122431395	43	36462											
TUBA1A	7846	broad.mit.edu	37	12	49579013	49579013	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	49579013	T	T	49579013	3	4	620	1	0	0	0	0	1	0	0	0	16755	797	28	2	223	2	TUBA1A	12	49579013	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08	38158513	49579013	84272882	44	36463											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53685545	53685545	+	Silent	SNP	C	C	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	53685545	C	G	53685545	2	3	620	1	0	0	0	0	0	0	0	1	5255	610	22	4		4	ESPL1	12	53685545	Silent	SNP	C	TCGA-EU-5906-01A-11D-1669-08	4106532	53685545	80166350	45	36464											
GPR109A	0	broad.mit.edu;hgsc.bcm.edu	37	12	123187634	123187634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	123187634	A	T	123187634	3	4	620	1	0	0	0	0	1	0	0	0	6632	188	7	5	898	5	GPR109A	12	123187634	Missense_Mutation	SNP	A	TCGA-EU-5906-01A-11D-1669-08	69502089	123187634	10664261	46	36465	472	2									
GPR109A	0	broad.mit.edu;hgsc.bcm.edu	37	12	123187635	123187635	+	Silent	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	123187635	G	A	123187635	2	1	620	1	0	0	0	0	0	0	0	1	6632	991	35	2		2	GPR109A	12	123187635	Silent	SNP	G	TCGA-EU-5906-01A-11D-1669-08	1	123187635	10664260	47	36466	472	2									
GOLGA3	2802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133354283	133354283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	133354283	G	T	133354283	3	4	620	1	0	0	0	0	1	0	0	0	6561	1328	46	4	829	4	GOLGA3	12	133354283	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	10166648	133354283	497612	48	36467											
NFATC4	4776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24839730	24839730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	24839730	G	A	24839730	3	1	620	1	0	0	0	0	1	0	0	0	10372	1174	41	2	1325	2	NFATC4	14	24839730	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08		24839730	82509810	49	36468											
FANCM	57697	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	45639810	45639810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	45639810	T	C	45639810	3	2	620	1	0	0	0	0	1	0	0	0	5678	1522	53	3	2067	3	FANCM	14	45639810	Missense_Mutation	SNP	T	TCGA-EU-5906-01A-11D-1669-08	20800080	45639810	61709730	50	36469											
ZFYVE1	53349	broad.mit.edu	37	14	73465019	73465019	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	73465019	T	T	73465019	3	4	620	1	0	0	0	0	1	0	0	0	17675	1377	48	4	1885	4	ZFYVE1	14	73465019	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	27825209	73465019	33884521	51	36470											
PSMC1	5700	broad.mit.edu;hgsc.bcm.edu	37	14	90730154	90730154	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	90730154	T	A	90730154	3	1	620	1	0	0	0	0	1	0	0	0	12695	1580	55	5	446	5	PSMC1	14	90730154	Missense_Mutation	SNP	T	TCGA-EU-5906-01A-11D-1669-08	17265135	90730154	16619386	52	36471											
DDX24	57062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	94528593	94528593	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	94528593	G	A	94528593	4	1	620	1	0	0	0	0	0	1	0	0	4353	1328	46	2	1514	2	DDX24	14	94528593	Nonsense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	3798439	94528593	12820947	53	36472											
LYSMD4	145748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	100269896	100269896	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	100269896	T	G	100269896	3	3	620	1	0	0	0	0	1	0	0	0	9134	1812	63	5	571	5	LYSMD4	15	100269896	Missense_Mutation	SNP	T	TCGA-EU-5906-01A-11D-1669-08		100269896	2261496	54	36473											
TOP3A	7156	broad.mit.edu	37	17	18196163	18196163	+	Silent	SNP	G	A	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	18196163	A	A	18196163	2	1	620	1	0	0	0	0	0	0	0	1	16379	1372	48	2		2	TOP3A	17	18196163	Silent	SNP	G	TCGA-EU-5906-01A-11D-1669-08		18196163	62999047	55	36474											
MYO18A	399687	broad.mit.edu;hgsc.bcm.edu	37	17	27493028	27493028	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	27493028	G	C	27493028	3	2	620	1	0	0	0	0	1	0	0	0	10072	1174	41	4	5397	4	MYO18A	17	27493028	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	9296865	27493028	53702182	56	36475											
ZGLP1	100125288	broad.mit.edu	37	19	10419249	10419249	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	10419249	T	T	10419249	3	4	620	1	0	0	0	0	1	0	0	0	17685	826	29	2	722	2	ZGLP1	19	10419249	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08		10419249	48709734	57	36476											
PODNL1	79883	broad.mit.edu	37	19	14043756	14043756	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	-	14043756	-	-	14043756	7	5	620	1	0	1	0	1	0	0	0	0	12186	188	7	0	241	0	PODNL1	19	14043756	Frame_Shift_Del	DEL	A	TCGA-EU-5906-01A-11D-1669-08	3624507	14043756	45085227	58	36477											
MAP1S	55201	broad.mit.edu;hgsc.bcm.edu	37	19	17837059	17837059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	17837059	T	C	17837059	3	2	620	1	0	0	0	0	1	0	0	0	9241	1580	55	3	884	3	MAP1S	19	17837059	Missense_Mutation	SNP	T	TCGA-EU-5906-01A-11D-1669-08	3793303	17837059	41291924	59	36478											
ZNF808	388558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53057358	53057358	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	53057358	A	T	53057358	4	4	620	1	0	0	0	0	0	1	0	0	18185	247	9	5	1199	5	ZNF808	19	53057358	Nonsense_Mutation	SNP	A	TCGA-EU-5906-01A-11D-1669-08	35220299	53057358	6071625	60	36479											
NLRP5	126206	broad.mit.edu	37	19	56539568	56539568	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	56539568	A	A	56539568	3	1	620	1	0	0	0	0	1	0	0	0	10487	1145	40	1	1995	1	NLRP5	19	56539568	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08	3482210	56539568	2589415	61	36480											
PIGT	51604	broad.mit.edu	37	20	44044813	44044813	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	T	44044813	T	T	44044813	3	4	620	1	0	0	0	0	1	0	0	0	11906	652	23	1	19	1	PIGT	20	44044813	Missense_Mutation	SNP	C	TCGA-EU-5906-01A-11D-1669-08		44044813	18980707	62	36481											
NRIP1	8204	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	16338673	16338673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	16338673	G	A	16338673	3	1	620	1	0	0	0	0	1	0	0	0	10659	1203	42	2	1639	2	NRIP1	21	16338673	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08		16338673	31791222	63	36482											
PI4KA	5297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21161667	21161667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	21161667	G	A	21161667	3	1	620	1	0	0	0	0	1	0	0	0	11880	1029	36	2	5341	2	PI4KA	22	21161667	Missense_Mutation	SNP	G	TCGA-EU-5906-01A-11D-1669-08		21161667	30142899	64	36483											
SF3A1	10291	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	30740940	30740940	+	Silent	SNP	T	T	A	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	A	30740940	T	A	30740940	2	1	620	1	0	0	0	0	0	0	0	1	14159	1509	53	5		5	SF3A1	22	30740940	Silent	SNP	T	TCGA-EU-5906-01A-11D-1669-08	9579273	30740940	20563626	65	36484											
ADSL	158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	40742592	40742592	+	Silent	SNP	C	C	G	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	G	40742592	C	G	40742592	2	3	620	1	0	0	0	0	0	0	0	1	346	639	23	4		4	ADSL	22	40742592	Silent	SNP	C	TCGA-EU-5906-01A-11D-1669-08	10001652	40742592	10561974	66	36485											
NCAPH2	29781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50960640	50960640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EU-5906-01A-11D-1669-08	TCGA-EU-5906-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	050dc3b7-e560-44f4-a05c-8c792d8467a8	e096d1a2-684d-43cc-b84c-b302aaf33c3f	C	50960640	A	C	50960640	3	2	620	1	0	0	0	0	1	0	0	0	10217	72	3	5	1286	5	NCAPH2	22	50960640	Missense_Mutation	SNP	A	TCGA-EU-5906-01A-11D-1669-08	10218048	50960640	343926	67	36486											
SPEN	23013	broad.mit.edu;hgsc.bcm.edu	37	1	16256217	16256217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	16256217	T	C	16256217	3	2	621	1	0	0	0	0	1	0	0	0	15050	1493	52	3	3524	3	SPEN	1	16256217	Missense_Mutation	SNP	T	TCGA-EU-5907-01A-11D-1669-08		16256217	232994404	1	36487											
RAP1GAP	5909	broad.mit.edu	37	1	21924516	21924516	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	-	21924516	-	-	21924516	7	5	621	1	0	1	0	1	0	0	0	0	13050	855	30	0	78	0	RAP1GAP	1	21924516	Frame_Shift_Del	DEL	C	TCGA-EU-5907-01A-11D-1669-08	5668299	21924516	227326105	2	36488											
ATG4C	84938	broad.mit.edu;hgsc.bcm.edu	37	1	63269471	63269471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	63269471	G	C	63269471	3	2	621	1	0	0	0	0	1	0	0	0	1098	1174	41	4	16	4	ATG4C	1	63269471	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08	41344955	63269471	185981150	3	36489											
PI4KB	5298	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	151280208	151280208	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	151280208	G	C	151280208	3	2	621	1	0	0	0	0	1	0	0	0	11881	971	34	4	1462	4	PI4KB	1	151280208	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08	88010737	151280208	97970413	4	36490											
DDX18	8886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	118577223	118577223	+	Splice_Site	SNP	A	A	G	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	G	118577223	A	G	118577223	5	3	621	1	0	0	0	0	0	0	1	0	4347	86	3	3	379	3	DDX18	2	118577223	Splice_Site	SNP	A	TCGA-EU-5907-01A-11D-1669-08		118577223	124622150	5	36491											
THSD7B	80731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	138414637	138414637	+	Silent	SNP	G	G	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	138414637	G	A	138414637	2	1	621	1	0	0	0	0	0	0	0	1	15892	1000	35	2		2	THSD7B	2	138414637	Silent	SNP	G	TCGA-EU-5907-01A-11D-1669-08	19837414	138414637	104784736	6	36492											
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238249156	238249156	+	Silent	SNP	G	G	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	238249156	G	C	238249156	2	2	621	1	0	0	0	0	0	0	0	1	3703	1335	47	4		4	COL6A3	2	238249156	Silent	SNP	G	TCGA-EU-5907-01A-11D-1669-08	99834519	238249156	4950217	7	36493											
VHL	7428	broad.mit.edu;ucsc.edu	37	3	10183787	10183787	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	-	10183787	-	-	10183787	7	5	621	1	0	1	0	1	0	0	0	0	17174	739	26	0	258	0	VHL	3	10183787	Frame_Shift_Del	DEL	C	TCGA-EU-5907-01A-11D-1669-08		10183787	187838643	8	36494											
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52661325	52661325	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	52661325	G	C	52661325	4	2	621	1	0	0	0	0	0	1	0	0	11498	1294	45	4	3467	4	PBRM1	3	52661325	Nonsense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08	42477538	52661325	145361105	9	36495											
TMEM108	66000	hgsc.bcm.edu	37	3	133099097	133099097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	133099097	G	A	133099097	3	1	621	1	0	0	0	0	1	0	0	0	16036	1087	38	1	548	1	TMEM108	3	133099097	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08	80437772	133099097	64923333	10	36496											
SLIT2	9353	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	20541152	20541152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	20541152	C	A	20541152	3	1	621	1	0	0	0	0	1	0	0	0	14753	827	29	4	1995	4	SLIT2	4	20541152	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08		20541152	170613124	11	36497											
MTTP	4547	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	100532310	100532310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	100532310	C	T	100532310	3	4	621	1	0	0	0	0	1	0	0	0	9971	652	23	1	1830	1	MTTP	4	100532310	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08	79991158	100532310	90621966	12	36498											
GOLPH3	64083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32126321	32126321	+	Silent	SNP	C	C	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	32126321	C	T	32126321	2	4	621	1	0	0	0	0	0	0	0	1	6575	564	20	2		2	GOLPH3	5	32126321	Silent	SNP	C	TCGA-EU-5907-01A-11D-1669-08		32126321	148788939	13	36499											
FOXD1	2297	broad.mit.edu	37	5	72743654	72743654	+	Silent	SNP	C	T	T	rs1052207		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	72743654	T	T	72743654	2	4	621	1	0	0	0	0	0	0	0	1	6003	755	27	1		1	FOXD1	5	72743654	Silent	SNP	C	TCGA-EU-5907-01A-11D-1669-08	40617333	72743654	108171606	14	36500											
UNC5A	90249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	176305475	176305475	+	Splice_Site	SNP	G	G	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	176305475	G	A	176305475	5	1	621	1	0	0	0	0	0	0	1	0	17003	1014	35	2	2069	2	UNC5A	5	176305475	Splice_Site	SNP	G	TCGA-EU-5907-01A-11D-1669-08	103561821	176305475	4609785	15	36501											
MRPL2	51069	broad.mit.edu;hgsc.bcm.edu	37	6	43024130	43024130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	G	43024130	T	G	43024130	3	3	621	1	0	0	0	0	1	0	0	0	9792	1435	50	5	618	5	MRPL2	6	43024130	Missense_Mutation	SNP	T	TCGA-EU-5907-01A-11D-1669-08		43024130	128090937	16	36502											
MET	4233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	116380121	116380121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	116380121	G	C	116380121	3	2	621	1	0	0	0	0	1	0	0	0	9492	1261	44	4	1520	4	MET	7	116380121	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08		116380121	42758542	17	36503											
AASS	10157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	121717991	121717991	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	-	121717991	T	-	121717991	7	5	621	1	0	1	0	1	0	0	0	0	24	1725	60	0	225	0	AASS	7	121717991	Frame_Shift_Del	DEL	T	TCGA-EU-5907-01A-11D-1669-08	5337870	121717991	37420672	18	36504											
ATP6V1B2	526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	20075680	20075680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	20075680	T	C	20075680	3	2	621	1	0	0	0	0	1	0	0	0	1179	1493	52	3	1333	3	ATP6V1B2	8	20075680	Missense_Mutation	SNP	T	TCGA-EU-5907-01A-11D-1669-08		20075680	126288342	19	36505											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	110477389	110477389	+	Silent	SNP	C	C	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	110477389	C	T	110477389	2	4	621	1	0	0	0	0	0	0	0	1	11979	535	19	1		1	PKHD1L1	8	110477389	Silent	SNP	C	TCGA-EU-5907-01A-11D-1669-08	90401709	110477389	35886633	20	36506											
MYO3A	53904	broad.mit.edu;ucsc.edu	37	10	26463158	26463158	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	26463158	T	T	26463158	3	4	621	1	0	0	0	0	1	0	0	0	10083	1203	42	4	4075	4	MYO3A	10	26463158	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08		26463158	109071589	21	36507											
ZMIZ1	57178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	81065919	81065919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	81065919	C	T	81065919	3	4	621	1	0	0	0	0	1	0	0	0	17708	893	31	1	2556	1	ZMIZ1	10	81065919	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08	54602761	81065919	54468828	22	36508											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	10	89692880	89692893	+	Frame_Shift_Del	DEL	ATTCACTGTAAAGC	ATTCACTGTAAAGC	-	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	ATTCACTGTAAAGC	ATTCACTGTAAAGC	ATTCACTGTAAAGC	-	ATTCACTGTAAAGC	ATTCACTGTAAAGC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	-	89692893	ATTCACTGTAAAGC	-	89692880	7	5	621	1	0	1	0	1	0	0	0	0	12748	101	4	0	382	0	PTEN	10	89692880	Frame_Shift_Del	DEL	ATTCACTGTAAAGC	TCGA-EU-5907-01A-11D-1669-08	8626961	89692880	45841867	23	36509											
EIF3A	8661	broad.mit.edu;hgsc.bcm.edu	37	10	120832959	120832959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	120832959	G	A	120832959	3	1	621	1	0	0	0	0	1	0	0	0	5014	1000	35	2	3857	2	EIF3A	10	120832959	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08	31140079	120832959	14701788	24	36510											
HPS5	11234	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	18303659	18303659	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	G	18303659	C	G	18303659	3	3	621	1	0	0	0	0	1	0	0	0	7349	623	22	4	230	4	HPS5	11	18303659	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08		18303659	116702857	25	36511											
SLC22A9	114571	hgsc.bcm.edu	37	11	63137795	63137796	+	In_Frame_Ins	INS	-	-	CGCGCG	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	CGCGCG	63137796	-	CGCGCG	63137795	7	5	621	1	0	1	1	0	0	0	0	0	14474	1654	58	0	269	0	SLC22A9	11	63137795	In_Frame_Ins	INS	-	TCGA-EU-5907-01A-11D-1669-08	44834136	63137795	71868721	26	36512											
TMEM123	114908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	102272803	102272803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	102272803	T	C	102272803	3	2	621	1	0	0	0	0	1	0	0	0	16048	1725	60	3	346	3	TMEM123	11	102272803	Missense_Mutation	SNP	T	TCGA-EU-5907-01A-11D-1669-08	39135008	102272803	32733713	27	36513											
SPSB2	84727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	6981774	6981774	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	6981774	C	A	6981774	4	1	621	1	0	0	0	0	0	1	0	0	15125	922	32	4	507	4	SPSB2	12	6981774	Nonsense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08		6981774	126870121	28	36514											
PLEKHG7	440107	broad.mit.edu;ucsc.edu	37	12	93134670	93134670	+	Silent	SNP	T	C	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	93134670	C	C	93134670	2	2	621	1	0	0	0	0	0	0	0	1	12082	1442	50	3		3	PLEKHG7	12	93134670	Silent	SNP	T	TCGA-EU-5907-01A-11D-1669-08	86152896	93134670	40717225	29	36515											
CHST11	50515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	104851282	104851282	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	-	104851282	C	-	104851282	7	5	621	1	0	1	0	1	0	0	0	0	3401	912	32	0	95	0	CHST11	12	104851282	Frame_Shift_Del	DEL	C	TCGA-EU-5907-01A-11D-1669-08	11716612	104851282	29000613	30	36516											
C13orf30	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	43362794	43362794	+	Silent	SNP	A	A	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	43362794	A	C	43362794	2	2	621	1	0	0	0	0	0	0	0	1	1727	175	7	5		5	C13orf30	13	43362794	Silent	SNP	A	TCGA-EU-5907-01A-11D-1669-08		43362794	71807084	31	36517											
RABGGTA	5875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24737807	24737807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	G	24737807	C	G	24737807	3	3	621	1	0	0	0	0	1	0	0	0	12980	710	25	4	816	4	RABGGTA	14	24737807	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08		24737807	82611733	32	36518											
NYNRIN	57523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	24885001	24885001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	24885001	C	T	24885001	3	4	621	1	0	0	0	0	1	0	0	0	10803	536	19	1	4076	1	NYNRIN	14	24885001	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08	147194	24885001	82464539	33	36519											
PHF23	79142	broad.mit.edu;ucsc.edu	37	17	7139291	7139291	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	G	7139291	G	G	7139291	3	3	621	1	0	0	0	0	1	0	0	0	11842	681	24	4	264	4	PHF23	17	7139291	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08		7139291	74055919	34	36520											
MYH4	4622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10366258	10366258	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	10366258	T	A	10366258	3	1	621	1	0	0	0	0	1	0	0	0	10044	1406	49	5	5007	5	MYH4	17	10366258	Missense_Mutation	SNP	T	TCGA-EU-5907-01A-11D-1669-08	3226967	10366258	70828952	35	36521			1	77		3	3	627	N	T_C	5.099894e-07
MYH4	4622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10366705	10366705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	G	10366705	C	G	10366705	3	3	621	1	0	0	0	0	1	0	0	0	10044	681	24	4	5192	4	MYH4	17	10366705	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08	447	10366705	70828505	36	36522			1	77		3	3	627	N	T_C	5.099894e-07
MYH4	4622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	10366884	10366884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	10366884	T	A	10366884	3	1	621	1	0	0	0	0	1	0	0	0	10044	1667	58	5	5226	5	MYH4	17	10366884	Missense_Mutation	SNP	T	TCGA-EU-5907-01A-11D-1669-08	179	10366884	70828326	37	36523			1	77		3	3	627	N	T_C	5.099894e-07
KRT23	25984	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	39086293	39086293	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	39086293	G	A	39086293	4	1	621	1	0	0	0	0	0	1	0	0	8467	1124	39	1	757	1	KRT23	17	39086293	Nonsense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08	28719409	39086293	42108917	38	36524											
NGFR	4804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	47587945	47587945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	47587945	C	A	47587945	3	1	621	1	0	0	0	0	1	0	0	0	10403	507	18	4	754	4	NGFR	17	47587945	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08	8501652	47587945	33607265	39	36525											
ABCA5	23461	broad.mit.edu;hgsc.bcm.edu	37	17	67280186	67280186	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	C	67280186	G	C	67280186	4	2	621	1	0	0	0	0	0	1	0	0	35	1294	45	4	2716	4	ABCA5	17	67280186	Nonsense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08	19692241	67280186	13915024	40	36526											
TMC8	147138	broad.mit.edu;hgsc.bcm.edu	37	17	76137117	76137117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	76137117	G	A	76137117	3	1	621	1	0	0	0	0	1	0	0	0	16003	1145	40	1	2163	1	TMC8	17	76137117	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08	8856931	76137117	5058093	41	36527											
TK1	7083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	76170949	76170960	+	In_Frame_Del	DEL	CCGGCAGGCTGG	CCGGCAGGCTGG	-	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	CCGGCAGGCTGG	CCGGCAGGCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	-	76170960	CCGGCAGGCTGG	-	76170949	7	5	621	1	0	1	0	1	0	0	0	0	15944	623	22	0	112	0	TK1	17	76170949	In_Frame_Del	DEL	CCGGCAGGCTGG	TCGA-EU-5907-01A-11D-1669-08	33832	76170949	5024261	42	36528											
IL12RB1	3594	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	18191685	18191685	+	Silent	SNP	C	C	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	18191685	C	T	18191685	2	4	621	1	0	0	0	0	0	0	0	1	7633	912	32	2		2	IL12RB1	19	18191685	Silent	SNP	C	TCGA-EU-5907-01A-11D-1669-08		18191685	40937298	43	36529											
PRX	57716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	40901528	40901528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	40901528	C	T	40901528	3	4	621	1	0	0	0	0	1	0	0	0	12652	536	19	1	1658	1	PRX	19	40901528	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08	22709843	40901528	18227455	44	36530											
SLC8A2	6543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	47969097	47969097	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	G	47969097	C	G	47969097	3	3	621	1	0	0	0	0	1	0	0	0	14720	912	32	4	2237	4	SLC8A2	19	47969097	Missense_Mutation	SNP	C	TCGA-EU-5907-01A-11D-1669-08	7067569	47969097	11159886	45	36531											
EPB41L1	2036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34776292	34776292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	34776292	G	T	34776292	3	4	621	1	0	0	0	0	1	0	0	0	5154	1377	48	4	927	4	EPB41L1	20	34776292	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08		34776292	28249228	46	36532											
PIGT	51604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44045233	44045233	+	Silent	SNP	A	A	G	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	G	44045233	A	G	44045233	2	3	621	1	0	0	0	0	0	0	0	1	11906	204	8	3		3	PIGT	20	44045233	Silent	SNP	A	TCGA-EU-5907-01A-11D-1669-08	9268941	44045233	18980287	47	36533											
PIGT	51604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44045300	44045300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	A	44045300	G	A	44045300	3	1	621	1	0	0	0	0	1	0	0	0	11906	943	33	2	337	2	PIGT	20	44045300	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08	67	44045300	18980220	48	36534											
B4GALT5	9334	broad.mit.edu	37	20	48330184	48330184	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	48330184	T	T	48330184	3	4	621	1	0	0	0	0	1	0	0	0	1274	188	7	5	1158	5	B4GALT5	20	48330184	Missense_Mutation	SNP	A	TCGA-EU-5907-01A-11D-1669-08	4284884	48330184	14695336	49	36535											
EIF3L	51386	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	38274117	38274117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EU-5907-01A-11D-1669-08	TCGA-EU-5907-10A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5fded36e-05ba-4cce-8303-738f5b04ad16	fbe54bba-5614-4f31-9139-0fa08b9d72bb	T	38274117	G	T	38274117	3	4	621	1	0	0	0	0	1	0	0	0	5024	1261	44	4	1556	4	EIF3L	22	38274117	Missense_Mutation	SNP	G	TCGA-EU-5907-01A-11D-1669-08		38274117	13030449	50	36536											
C1orf94	84970	ucsc.edu	37	1	34677972	34677972	+	Silent	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	G	34677972	A	G	34677972	2	3	622	1	0	0	0	0	0	0	0	1	2073	291	11	3		3	C1orf94	1	34677972	Silent	SNP	A	TCGA-EV-5901-01A-11D-1589-08		34677972	214572649	1	36537											
RNF115	27246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145688091	145688091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	145688091	T	A	145688091	3	1	622	1	0	0	0	0	1	0	0	0	13443	1461	51	5	820	5	RNF115	1	145688091	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	111010119	145688091	103562530	2	36538											
ANP32E	81611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150201557	150201557	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	G	150201557	T	G	150201557	3	3	622	1	0	0	0	0	1	0	0	0	709	1493	52	5	481	5	ANP32E	1	150201557	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	4513466	150201557	99049064	3	36539											
NHLH1	4807	broad.mit.edu;bcgsc.ca	37	1	160340735	160340735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	160340735	G	A	160340735	3	1	622	1	0	0	0	0	1	0	0	0	10410	1087	38	1	216	1	NHLH1	1	160340735	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	10139178	160340735	88909886	4	36540											
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161021130	161021130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	161021130	C	A	161021130	3	1	622	1	0	0	0	0	1	0	0	0	879	739	26	4	1923	4	ARHGAP30	1	161021130	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	680395	161021130	88229491	5	36541											
VPS54	51542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	64199372	64199372	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	64199372	T	A	64199372	4	1	622	1	0	0	0	0	0	1	0	0	17228	1792	62	5	2628	5	VPS54	2	64199372	Nonsense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08		64199372	179000001	6	36542											
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97216937	97216937	+	Silent	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	97216937	G	A	97216937	2	1	622	1	0	0	0	0	0	0	0	1	921	1248	44	2		2	ARID5A	2	97216937	Silent	SNP	G	TCGA-EV-5901-01A-11D-1589-08	33017565	97216937	145982436	7	36543											
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97427340	97427340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	97427340	C	A	97427340	3	1	622	1	0	0	0	0	1	0	0	0	3617	681	24	4	606	4	CNNM4	2	97427340	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	210403	97427340	145772033	8	36544											
PRPF40A	55660	hgsc.bcm.edu	37	2	153532998	153532998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	153532998	T	C	153532998	3	2	622	1	0	0	0	0	1	0	0	0	12581	1638	57	3	1908	3	PRPF40A	2	153532998	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	56105658	153532998	89666375	9	36545											
BSN	8927	hgsc.bcm.edu	37	3	49698758	49698759	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	-	49698759	CT	-	49698758	7	5	622	1	0	1	0	1	0	0	0	0	1532	564	20	0	9502	0	BSN	3	49698758	Frame_Shift_Del	DEL	CT	TCGA-EV-5901-01A-11D-1589-08		49698758	148323672	10	36546											
PSMD6	9861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	64004274	64004274	+	Splice_Site	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	64004274	C	A	64004274	5	1	622	1	0	0	0	0	0	0	1	0	12712	521	18	4	358	4	PSMD6	3	64004274	Splice_Site	SNP	C	TCGA-EV-5901-01A-11D-1589-08	14305516	64004274	134018156	11	36547											
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97202865	97202865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	97202865	A	C	97202865	3	2	622	1	0	0	0	0	1	0	0	0	5173	333	12	5	2268	5	EPHA6	3	97202865	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08	33198591	97202865	100819565	12	36548											
CD86	942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	121825262	121825263	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	-	121825263	AT	-	121825262	7	5	622	1	0	1	0	1	0	0	0	0	3045	204	8	0	632	0	CD86	3	121825262	Frame_Shift_Del	DEL	AT	TCGA-EV-5901-01A-11D-1589-08	24622397	121825262	76197168	13	36549											
CEP63	80254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	134250746	134250746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	-	134250746	G	-	134250746	7	5	622	1	0	1	0	1	0	0	0	0	3259	1348	47	0	292	0	CEP63	3	134250746	Frame_Shift_Del	DEL	G	TCGA-EV-5901-01A-11D-1589-08	12425484	134250746	63771684	14	36550											
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169847187	169847187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	169847187	G	A	169847187	3	1	622	1	0	0	0	0	1	0	0	0	11825	1348	47	2	1946	2	PHC3	3	169847187	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	35596441	169847187	28175243	15	36551											
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55139834	55139834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	55139834	G	A	55139834	3	1	622	1	0	0	0	0	1	0	0	0	11668	1145	40	1	1529	1	PDGFRA	4	55139834	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		55139834	136014442	16	36552											
TERT	7015	broad.mit.edu	37	5	1268651	1268651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	1268651	C	A	1268651	3	1	622	1	0	0	0	0	1	0	0	0	15776	623	22	4	864	4	TERT	5	1268651	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		1268651	179646609	17	36553											
LPCAT1	79888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1488543	1488543	+	Silent	SNP	A	A	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	1488543	A	T	1488543	2	4	622	1	0	0	0	0	0	0	0	1	8917	59	3	5		5	LPCAT1	5	1488543	Silent	SNP	A	TCGA-EV-5901-01A-11D-1589-08	219892	1488543	179426717	18	36554											
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	6620280	6620280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	6620280	C	T	6620280	3	4	622	1	0	0	0	0	1	0	0	0	10685	913	32	2	1601	2	NSUN2	5	6620280	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	5131737	6620280	174294980	19	36555											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82836813	82836813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	G	82836813	A	G	82836813	3	3	622	1	0	0	0	0	1	0	0	0	17150	333	12	3	8017	3	VCAN	5	82836813	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08	76216533	82836813	98078447	20	36556											
SLC22A5	6584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131729504	131729504	+	Splice_Site	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	131729504	G	A	131729504	5	1	622	1	0	0	0	0	0	0	1	0	14470	1275	44	2	1621	2	SLC22A5	5	131729504	Splice_Site	SNP	G	TCGA-EV-5901-01A-11D-1589-08	48892691	131729504	49185756	21	36557											
PPP1R10	5514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30577691	30577691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	30577691	G	T	30577691	3	4	622	1	0	0	0	0	1	0	0	0	12362	1029	36	4	2863	4	PPP1R10	6	30577691	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		30577691	140537376	22	36558											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	31683522	31683527	+	In_Frame_Del	DEL	GACTTT	GACTTT	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	GACTTT	GACTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	-	31683527	GACTTT	-	31683522	7	5	622	1	0	1	0	1	0	0	0	0	2766	1045	37	0	2576	0	CCDC129	7	31683522	In_Frame_Del	DEL	GACTTT	TCGA-EV-5901-01A-11D-1589-08		31683522	127455141	23	36559											
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	43918184	43918184	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	43918184	A	C	43918184	3	2	622	1	0	0	0	0	1	0	0	0	17038	246	9	5	1921	5	URGCP	7	43918184	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08	12234662	43918184	115220479	24	36560											
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72907199	72907199	+	Silent	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	72907199	T	C	72907199	2	2	622	1	0	0	0	0	0	0	0	1	1330	1538	54	3		3	BAZ1B	7	72907199	Silent	SNP	T	TCGA-EV-5901-01A-11D-1589-08	28989015	72907199	86231464	25	36561											
DNAJC2	27000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102963052	102963053	+	Nonsense_Mutation	DNP	AT	AT	TA	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	TA	102963053	AT	TA	102963052	4	4	622	1	0	0	0	0	0	1	0	0	4641	449	16	5	1062	5	DNAJC2	7	102963052	Nonsense_Mutation	DNP	AT	TCGA-EV-5901-01A-11D-1589-08	30055853	102963052	56175611	26	36562											
ZFHX4	79776	hgsc.bcm.edu	37	8	77618779	77618779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	G	77618779	A	G	77618779	3	3	622	1	0	0	0	0	1	0	0	0	17647	304	11	3	2458	3	ZFHX4	8	77618779	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08		77618779	68745243	27	36563											
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144997708	144997708	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	144997708	T	A	144997708	3	1	622	1	0	0	0	0	1	0	0	0	12059	1580	55	5	7262	5	PLEC	8	144997708	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	67378929	144997708	1366314	28	36564											
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139908396	139908396	+	Silent	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	139908396	G	C	139908396	2	2	622	1	0	0	0	0	0	0	0	1	32	1277	45	4		4	ABCA2	9	139908396	Silent	SNP	G	TCGA-EV-5901-01A-11D-1589-08		139908396	1305035	29	36565											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61836183	61836183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	61836183	T	C	61836183	3	2	622	1	0	0	0	0	1	0	0	0	622	1617	56	3	9018	3	ANK3	10	61836183	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08		61836183	73698564	30	36566											
LDB3	11155	hgsc.bcm.edu	37	10	88476182	88476182	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	88476182	G	C	88476182	3	2	622	1	0	0	0	0	1	0	0	0	8704	1319	46	4	1700	4	LDB3	10	88476182	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	26639999	88476182	47058565	31	36567											
IFIT1B	439996	broad.mit.edu	37	10	91143275	91143275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	91143275	G	C	91143275	3	2	622	1	0	0	0	0	1	0	0	0	7529	1291	45	4	211	4	IFIT1B	10	91143275	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	2667093	91143275	44391472	32	36568											
GUCY2C	2984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14796597	14796597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	14796597	C	T	14796597	3	4	622	1	0	0	0	0	1	0	0	0	6903	536	19	1	1424	1	GUCY2C	12	14796597	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		14796597	119055298	33	36569											
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121947832	121947832	+	Silent	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	121947832	C	T	121947832	2	4	622	1	0	0	0	0	0	0	0	1	8132	854	30	2		2	KDM2B	12	121947832	Silent	SNP	C	TCGA-EV-5901-01A-11D-1589-08	107151235	121947832	11904063	34	36570											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	23909472	23909472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	23909472	A	T	23909472	3	4	622	1	0	0	0	0	1	0	0	0	13817	246	9	5	5200	5	SACS	13	23909472	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08		23909472	91260406	35	36571											
B3GALTL	145173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	31821210	31821210	+	Silent	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	G	31821210	A	G	31821210	2	3	622	1	0	0	0	0	0	0	0	1	1252	204	8	3		3	B3GALTL	13	31821210	Silent	SNP	A	TCGA-EV-5901-01A-11D-1589-08	7911738	31821210	83348668	36	36572											
AHNAK2	113146	ucsc.edu	37	14	105418145	105418145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	105418145	G	A	105418145	3	1	622	1	0	0	0	0	1	0	0	0	415	1203	42	2	13748	2	AHNAK2	14	105418145	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		105418145	1931395	37	36573											
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42717056	42717056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	42717056	A	C	42717056	3	2	622	1	0	0	0	0	1	0	0	0	17649	446	16	5	582	5	ZFP106	15	42717056	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08		42717056	59814336	38	36574											
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	81230320	81230320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	81230320	G	A	81230320	3	1	622	1	0	0	0	0	1	0	0	0	8220	1246	43	2	3497	2	KIAA1199	15	81230320	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	38513264	81230320	21301072	39	36575											
AXIN1	8312	broad.mit.edu	37	16	354433	354433	+	Silent	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	354433	G	A	354433	2	1	622	1	0	0	0	0	0	0	0	1	1236	1256	44	2		2	AXIN1	16	354433	Silent	SNP	G	TCGA-EV-5901-01A-11D-1589-08		354433	90000320	40	36576											
ROGDI	79641	hgsc.bcm.edu	37	16	4849745	4849745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	4849745	T	C	4849745	3	2	622	1	0	0	0	0	1	0	0	0	13533	1638	57	3	513	3	ROGDI	16	4849745	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	4495312	4849745	85505008	41	36577											
FBRS	64319	hgsc.bcm.edu;broad.mit.edu	37	16	30676958	30676958	+	Splice_Site	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	30676958	G	C	30676958	5	2	622	1	0	0	0	0	0	0	1	0	5714	956	33	4	158	4	FBRS	16	30676958	Splice_Site	SNP	G	TCGA-EV-5901-01A-11D-1589-08	25827213	30676958	59677795	42	36578											
ALOX12	239	broad.mit.edu	37	17	6905026	6905026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	6905026	C	A	6905026	3	1	622	1	0	0	0	0	1	0	0	0	536	595	21	4	1087	4	ALOX12	17	6905026	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		6905026	74290184	43	36579											
LRRC37A3	374819	ucsc.edu	37	17	62855652	62855652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	62855652	T	C	62855652	3	2	622	1	0	0	0	0	1	0	0	0	9000	1821	63	3	308	3	LRRC37A3	17	62855652	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	55950626	62855652	18339558	44	36580											
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67283846	67283846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	67283846	C	T	67283846	3	4	622	1	0	0	0	0	1	0	0	0	35	884	31	1	3079	1	ABCA5	17	67283846	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	4428194	67283846	13911364	45	36581											
POLRMT	5442	broad.mit.edu	37	19	621842	621842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	621842	C	T	621842	3	4	622	1	0	0	0	0	1	0	0	0	12245	739	26	2	1884	2	POLRMT	19	621842	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		621842	58507141	46	36582											
PDE4A	5141	hgsc.bcm.edu	37	19	10541704	10541704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	10541704	C	A	10541704	3	1	622	1	0	0	0	0	1	0	0	0	11646	536	19	4	510	4	PDE4A	19	10541704	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	9919862	10541704	48587279	47	36583											
RAB3A	5864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18313494	18313494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	18313494	G	C	18313494	3	2	622	1	0	0	0	0	1	0	0	0	12944	1049	37	4	621	4	RAB3A	19	18313494	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	7771790	18313494	40815489	48	36584											
ZNF155	7711	broad.mit.edu	37	19	44501505	44501505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	44501505	G	A	44501505	3	1	622	1	0	0	0	0	1	0	0	0	17748	1145	40	1	1510	1	ZNF155	19	44501505	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	26188011	44501505	14627478	49	36585											
CSNK2A1	1457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	468205	468205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	468205	C	T	468205	3	4	622	1	0	0	0	0	1	0	0	0	3959	884	31	1	348	1	CSNK2A1	20	468205	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		468205	62557315	50	36586											
CRYZL1	9946	broad.mit.edu	37	21	34974552	34974552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	C	34974552	T	C	34974552	3	2	622	1	0	0	0	0	1	0	0	0	3925	1588	55	3	508	3	CRYZL1	21	34974552	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08		34974552	13155343	51	36587											
HMOX1	3162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35779129	35779129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	T	35779129	G	T	35779129	3	4	622	1	0	0	0	0	1	0	0	0	7250	991	35	4	60	4	HMOX1	22	35779129	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		35779129	15525437	52	36588											
SUN2	25777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39146253	39146253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	G	39146253	A	G	39146253	3	3	622	1	0	0	0	0	1	0	0	0	15404	304	11	3	1712	3	SUN2	22	39146253	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08	3367124	39146253	12158313	53	36589											
DDX3X	1654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41202004	41202004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	A	41202004	G	A	41202004	3	1	622	1	0	0	0	0	1	0	0	0	4360	1174	41	2	480	2	DDX3X	23	41202004	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		41202004	114068556	54	36590											
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27875947	27875947	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	27875947	T	G	27875947	3	3	623	1	0	0	0	0	1	0	0	0	412	1821	63	5	2135	5	AHDC1	1	27875947	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		27875947	221374674	1	36591											
RLF	6018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	40705390	40705391	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	40705391	-	T	40705390	7	5	623	1	0	1	1	0	0	0	0	0	13402	1281	45	0	5046	0	RLF	1	40705390	Frame_Shift_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08	12829443	40705390	208545231	2	36592											
USP24	23358	hgsc.bcm.edu;broad.mit.edu	37	1	55569689	55569689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	55569689	T	C	55569689	3	2	623	1	0	0	0	0	1	0	0	0	17067	1522	53	3	3085	3	USP24	1	55569689	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	14864299	55569689	193680932	3	36593											
C1orf54	79630	broad.mit.edu	37	1	150246559	150246559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	150246559	T	C	150246559	3	2	623	1	0	0	0	0	1	0	0	0	2048	1667	58	3	122	3	C1orf54	1	150246559	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	94676870	150246559	99004062	4	36594											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152279672	152279672	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	152279672	C	A	152279672	4	1	623	1	0	0	0	0	0	1	0	0	5929	632	22	4	4499	4	FLG	1	152279672	Nonsense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	2033113	152279672	96970949	5	36595											
MYOC	4653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171605341	171605341	+	Silent	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	171605341	G	C	171605341	2	2	623	1	0	0	0	0	0	0	0	1	10093	1045	37	4		4	MYOC	1	171605341	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	19325669	171605341	77645280	6	36596											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228473855	228473855	+	Silent	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	228473855	G	C	228473855	2	2	623	1	0	0	0	0	0	0	0	1	10819	1161	41	4		4	OBSCN	1	228473855	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	56868514	228473855	20776766	7	36597											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32667276	32667276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	32667276	A	C	32667276	3	2	623	1	0	0	0	0	1	0	0	0	1438	217	8	5	4158	5	BIRC6	2	32667276	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08		32667276	210532097	8	36598											
HNRPLL	92906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	38791355	38791355	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	38791355	T	A	38791355	3	1	623	1	0	0	0	0	1	0	0	0	7284	1609	56	5	34	5	HNRPLL	2	38791355	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	6124079	38791355	204408018	9	36599											
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	39030017	39030017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	39030017	T	-	39030017	7	5	623	1	0	1	0	1	0	0	0	0	4515	1609	56	0	311	0	DHX57	2	39030017	Frame_Shift_Del	DEL	T	TCGA-EV-5902-01A-11D-1589-08	238662	39030017	204169356	10	36600											
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44508525	44508525	+	Splice_Site	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	44508525	G	C	44508525	5	2	623	1	0	0	0	0	0	0	1	0	14639	1014	35	4	620	4	SLC3A1	2	44508525	Splice_Site	SNP	G	TCGA-EV-5902-01A-11D-1589-08	5478508	44508525	198690848	11	36601											
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	49190328	49190328	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	49190328	G	A	49190328	2	1	623	1	0	0	0	0	0	0	0	1	6080	1277	45	2		2	FSHR	2	49190328	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	4681803	49190328	194009045	12	36602											
MRPS5	64969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95753148	95753148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	95753148	C	G	95753148	3	3	623	1	0	0	0	0	1	0	0	0	9853	855	30	4	49	4	MRPS5	2	95753148	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	46562820	95753148	147446225	13	36603											
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102836361	102836361	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	102836361	A	C	102836361	3	2	623	1	0	0	0	0	1	0	0	0	7671	246	9	5	901	5	IL1RL2	2	102836361	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	7083213	102836361	140363012	14	36604											
RND3	390	broad.mit.edu	37	2	151328205	151328205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	151328205	C	A	151328205	3	1	623	1	0	0	0	0	1	0	0	0	13434	652	23	4	323	4	RND3	2	151328205	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	48491844	151328205	91871168	15	36605											
XIRP2	129446	hgsc.bcm.edu;bcgsc.ca	37	2	168115244	168115247	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	168115247	TTTC	-	168115244	7	5	623	1	0	1	0	1	0	0	0	0	17442	1493	52	0	11605	0	XIRP2	2	168115244	Frame_Shift_Del	DEL	TTTC	TCGA-EV-5902-01A-11D-1589-08	16787039	168115244	75084129	16	36606											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179517427	179517427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	179517427	T	G	179517427	3	3	623	1	0	0	0	0	1	0	0	0	16747	1856	64	5		5	TTN	2	179517427	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	11402183	179517427	63681946	17	36607											
FAM171B	165215	hgsc.bcm.edu	37	2	187559029	187559029	+	Silent	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	187559029	A	G	187559029	2	3	623	1	0	0	0	0	0	0	0	1	5495	40	2	3		3	FAM171B	2	187559029	Silent	SNP	A	TCGA-EV-5902-01A-11D-1589-08	8041602	187559029	55640344	18	36608											
CASP10	843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	202073930	202073931	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	202073931	TG	-	202073930	7	5	623	1	0	1	0	1	0	0	0	0	2671	1580	55	0	1090	0	CASP10	2	202073930	Frame_Shift_Del	DEL	TG	TCGA-EV-5902-01A-11D-1589-08	14514901	202073930	41125443	19	36609											
WNT10A	80326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219754716	219754716	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	219754716	G	C	219754716	3	2	623	1	0	0	0	0	1	0	0	0	17394	933	33	4	397	4	WNT10A	2	219754716	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	17680786	219754716	23444657	20	36610											
NR1D2	9975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	24003534	24003534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	24003534	T	G	24003534	3	3	623	1	0	0	0	0	1	0	0	0	10623	1464	51	5	602	5	NR1D2	3	24003534	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		24003534	174018896	21	36611											
SCN11A	11280	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38889146	38889146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	38889146	C	T	38889146	3	4	623	1	0	0	0	0	1	0	0	0	13926	884	31	1	964	1	SCN11A	3	38889146	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	14885612	38889146	159133284	22	36612											
TGM4	7047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	44935102	44935102	+	Missense_Mutation	SNP	G	G	A	rs147559877		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	44935102	G	A	44935102	3	1	623	1	0	0	0	0	1	0	0	0	15844	1087	38	1	482	1	TGM4	3	44935102	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	6045956	44935102	153087328	23	36613											
LZTFL1	54585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45874547	45874547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	45874547	T	G	45874547	3	3	623	1	0	0	0	0	1	0	0	0	9143	1841	64	5	472	5	LZTFL1	3	45874547	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	939445	45874547	152147883	24	36614											
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49362339	49362339	+	Silent	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	49362339	T	C	49362339	2	2	623	1	0	0	0	0	0	0	0	1	17083	1393	49	3		3	USP4	3	49362339	Silent	SNP	T	TCGA-EV-5902-01A-11D-1589-08	3487792	49362339	148660091	25	36615											
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	74350871	74350871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	74350871	G	T	74350871	3	4	623	1	0	0	0	0	1	0	0	0	3644	1252	44	4	1250	4	CNTN3	3	74350871	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	24988532	74350871	123671559	26	36616											
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138456588	138456588	+	Silent	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	138456588	T	C	138456588	2	2	623	1	0	0	0	0	0	0	0	1	11921	1509	53	3		3	PIK3CB	3	138456588	Silent	SNP	T	TCGA-EV-5902-01A-11D-1589-08	64105717	138456588	59565842	27	36617											
PARL	55486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183551347	183551348	+	Missense_Mutation	DNP	CT	CT	GG	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	GG	183551348	CT	GG	183551347	3	3	623	1	0	0	0	0	1	0	0	0	11458	797	28	4	186	4	PARL	3	183551347	Missense_Mutation	DNP	CT	TCGA-EV-5902-01A-11D-1589-08	45094759	183551347	14471083	28	36618											
RNF168	165918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196214405	196214405	+	Silent	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	196214405	G	T	196214405	2	4	623	1	0	0	0	0	0	0	0	1	13472	1335	47	4		4	RNF168	3	196214405	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	12663058	196214405	1808025	29	36619											
DRD5	1816	hgsc.bcm.edu	37	4	9784112	9784112	+	Silent	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	9784112	T	C	9784112	2	2	623	1	0	0	0	0	0	0	0	1	4762	1538	54	3		3	DRD5	4	9784112	Silent	SNP	T	TCGA-EV-5902-01A-11D-1589-08		9784112	181370164	30	36620											
TLR6	10333	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	38830116	38830116	+	Missense_Mutation	SNP	C	C	A	rs3796508	byfrequency;alternate_allele	TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	38830116	C	A	38830116	3	1	623	1	0	0	0	0	1	0	0	0	15967	536	19	4	1415	4	TLR6	4	38830116	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	29046004	38830116	152324160	31	36621											
YTHDC1	91746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69203291	69203291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	69203291	T	G	69203291	3	3	623	1	0	0	0	0	1	0	0	0	17508	1565	54	5	1785	5	YTHDC1	4	69203291	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	30373175	69203291	121950985	32	36622											
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71510231	71510231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	71510231	C	T	71510231	3	4	623	1	0	0	0	0	1	0	0	0	5114	855	30	2	3118	2	ENAM	4	71510231	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	2306940	71510231	119644045	33	36623											
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79512751	79512751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	79512751	C	T	79512751	3	4	623	1	0	0	0	0	1	0	0	0	719	643	23	1	479	1	ANXA3	4	79512751	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	8002520	79512751	111641525	34	36624											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7873543	7873543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	7873543	G	A	7873543	3	1	623	1	0	0	0	0	1	0	0	0	9968	1117	39	1	278	1	MTRR	5	7873543	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08		7873543	173041717	35	36625											
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14471560	14471560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	14471560	C	T	14471560	3	4	623	1	0	0	0	0	1	0	0	0	16564	913	32	2	6047	2	TRIO	5	14471560	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	6598017	14471560	166443700	36	36626											
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38954924	38954924	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	38954924	A	C	38954924	4	2	623	1	0	0	0	0	0	1	0	0	13371	224	8	5	2525	5	RICTOR	5	38954924	Nonsense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	24483364	38954924	141960336	37	36627											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	67588178	67588178	+	Silent	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	67588178	A	G	67588178	2	3	623	1	0	0	0	0	0	0	0	1	11925	291	11	3		3	PIK3R1	5	67588178	Silent	SNP	A	TCGA-EV-5902-01A-11D-1589-08	28633254	67588178	113327082	38	36628											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	67591286	67591286	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	67591286	A	T	67591286	3	4	623	1	0	0	0	0	1	0	0	0	11925	43	2	5	1964	5	PIK3R1	5	67591286	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	3108	67591286	113323974	39	36629											
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131324510	131324510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	131324510	T	A	131324510	3	1	623	1	0	0	0	0	1	0	0	0	181	1464	51	5	1674	5	ACSL6	5	131324510	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	63733224	131324510	49590750	40	36630											
MRPL22	29093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154330411	154330411	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	154330411	T	-	154330411	7	5	623	1	0	1	0	1	0	0	0	0	9795	1693	59	0	118	0	MRPL22	5	154330411	Frame_Shift_Del	DEL	T	TCGA-EV-5902-01A-11D-1589-08	23005901	154330411	26584849	41	36631											
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	160113261	160113262	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	TC	160113262	GG	TC	160113261	3	4	623	1	0	0	0	0	1	0	0	0	1117	991	35	4	4174	4	ATP10B	5	160113261	Missense_Mutation	DNP	GG	TCGA-EV-5902-01A-11D-1589-08	5782850	160113261	20801999	42	36632											
BTNL8	79908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180374575	180374575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	180374575	G	A	180374575	3	1	623	1	0	0	0	0	1	0	0	0	1569	1203	42	2	777	2	BTNL8	5	180374575	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	20261314	180374575	540685	43	36633											
MTCH1	23787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36949411	36949411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	36949411	T	A	36949411	3	1	623	1	0	0	0	0	1	0	0	0	9920	1493	52	5	803	5	MTCH1	6	36949411	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		36949411	134165656	44	36634											
SNX10	29887	hgsc.bcm.edu;bcgsc.ca	37	7	26412183	26412200	+	Frame_Shift_Del	DEL	GGAATCCTGAAAAATAAT	GGAATCCTGAAAAATAAT	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	GGAATCCTGAAAAATAAT	GGAATCCTGAAAAATAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	26412200	GGAATCCTGAAAAATAAT	-	26412183	7	5	623	1	0	1	0	1	0	0	0	0	14894	991	35	0	619	0	SNX10	7	26412183	Frame_Shift_Del	DEL	GGAATCCTGAAAAATAAT	TCGA-EV-5902-01A-11D-1589-08		26412183	132726480	45	36635											
GBAS	2631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	56045954	56045955	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	56045955	AC	-	56045954	7	5	623	1	0	1	0	1	0	0	0	0	6276	388	14	0	234	0	GBAS	7	56045954	Frame_Shift_Del	DEL	AC	TCGA-EV-5902-01A-11D-1589-08	29633771	56045954	103092709	46	36636											
C7orf43	55262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99753405	99753405	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	99753405	G	A	99753405	2	1	623	1	0	0	0	0	0	0	0	1	2395	1219	43	2		2	C7orf43	7	99753405	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	43707451	99753405	59385258	47	36637											
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	110763780	110763780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	110763780	A	G	110763780	3	3	623	1	0	0	0	0	1	0	0	0	9043	362	13	3	954	3	LRRN3	7	110763780	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	11010375	110763780	48374883	48	36638											
TNPO3	23534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128626935	128626935	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	128626935	T	A	128626935	3	1	623	1	0	0	0	0	1	0	0	0	16349	1609	56	5	1277	5	TNPO3	7	128626935	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	17863155	128626935	30511728	49	36639											
STMN4	81551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	27097566	27097566	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	27097566	T	-	27097566	7	5	623	1	0	1	0	1	0	0	0	0	15323	1722	60	0	145	0	STMN4	8	27097566	Frame_Shift_Del	DEL	T	TCGA-EV-5902-01A-11D-1589-08		27097566	119266456	50	36640											
C8orf76	84933	broad.mit.edu	37	8	124243792	124243792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	124243792	G	T	124243792	3	4	623	1	0	0	0	0	1	0	0	0	2439	942	33	4	591	4	C8orf76	8	124243792	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	97146226	124243792	22120230	51	36641											
PLEC	5339	broad.mit.edu	37	8	144995793	144995793	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	144995793	C	T	144995793	2	4	623	1	0	0	0	0	0	0	0	1	12059	755	27	1		1	PLEC	8	144995793	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08	20752001	144995793	1368229	52	36642											
GBA2	57704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35739010	35739010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	35739010	A	G	35739010	3	3	623	1	0	0	0	0	1	0	0	0	6274	101	4	3	1027	3	GBA2	9	35739010	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08		35739010	105474421	53	36643											
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	97063238	97063238	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	97063238	C	T	97063238	2	4	623	1	0	0	0	0	0	0	0	1	17754	784	28	2		2	ZNF169	9	97063238	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08	61324228	97063238	44150193	54	36644											
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114503767	114503767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	114503767	A	T	114503767	3	4	623	1	0	0	0	0	1	0	0	0	2502	14	1	5	3435	5	C9orf84	9	114503767	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	17440529	114503767	26709664	55	36645											
AMBP	259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	116837296	116837296	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	116837296	G	-	116837296	7	5	623	1	0	1	0	1	0	0	0	0	564	1145	40	0	809	0	AMBP	9	116837296	Frame_Shift_Del	DEL	G	TCGA-EV-5902-01A-11D-1589-08	2333529	116837296	24376135	56	36646											
GSN	2934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	124074615	124074615	+	Splice_Site	SNP	A	A	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	124074615	A	T	124074615	5	4	623	1	0	0	0	0	0	0	1	0	6832	202	7	5	711	5	GSN	9	124074615	Splice_Site	SNP	A	TCGA-EV-5902-01A-11D-1589-08	7237319	124074615	17138816	57	36647											
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	125772734	125772738	+	Frame_Shift_Del	DEL	TTCAG	TTCAG	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TTCAG	TTCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	125772738	TTCAG	-	125772734	7	5	623	1	0	1	0	1	0	0	0	0	12977	1596	56	0	1514	0	RABGAP1	9	125772734	Frame_Shift_Del	DEL	TTCAG	TCGA-EV-5902-01A-11D-1589-08	1698119	125772734	15440697	58	36648											
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131515779	131515779	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	131515779	A	-	131515779	7	5	623	1	0	1	0	1	0	0	0	0	17637	246	9	0	1942	0	ZER1	9	131515779	Frame_Shift_Del	DEL	A	TCGA-EV-5902-01A-11D-1589-08	5743045	131515779	9697652	59	36649											
WDR37	22884	hgsc.bcm.edu	37	10	1151150	1151150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	1151150	T	C	1151150	3	2	623	1	0	0	0	0	1	0	0	0	17303	1551	54	3	1084	3	WDR37	10	1151150	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		1151150	134383597	60	36650											
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	116225561	116225561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	116225561	A	G	116225561	3	3	623	1	0	0	0	0	1	0	0	0	94	217	8	3	1043	3	ABLIM1	10	116225561	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	115074411	116225561	19309186	61	36651											
TRIM22	10346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5717510	5717510	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	5717510	C	T	5717510	2	4	623	1	0	0	0	0	0	0	0	1	16508	581	21	2		2	TRIM22	11	5717510	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08		5717510	129289006	62	36652											
INCENP	3619	broad.mit.edu	37	11	61916013	61916015	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	61916015	AGA	-	61916013	7	5	623	1	0	1	0	1	0	0	0	0	7740	304	11	0	2328	0	INCENP	11	61916013	In_Frame_Del	DEL	AGA	TCGA-EV-5902-01A-11D-1589-08	56198503	61916013	73090503	63	36653											
GPR137	56834	broad.mit.edu	37	11	64056826	64056826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	64056826	C	T	64056826	3	4	623	1	0	0	0	0	1	0	0	0	6652	739	26	2	1557	2	GPR137	11	64056826	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	2140813	64056826	70949690	64	36654											
ARHGEF17	9828	ucsc.edu;bcgsc.ca	37	11	73073120	73073120	+	Silent	SNP	G	G	T	rs200742689	alternate_allele	TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	73073120	G	T	73073120	2	4	623	1	0	0	0	0	0	0	0	1	900	1103	39	4		4	ARHGEF17	11	73073120	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	9016294	73073120	61933396	65	36655											
OR2AT4	341152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74800733	74800733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	74800733	G	A	74800733	3	1	623	1	0	0	0	0	1	0	0	0	10994	1294	45	2	939	2	OR2AT4	11	74800733	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	1727613	74800733	60205783	66	36656											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76867021	76867021	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	76867021	C	T	76867021	2	4	623	1	0	0	0	0	0	0	0	1	10089	477	17	2		2	MYO7A	11	76867021	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08	2066288	76867021	58139495	67	36657											
GAB2	9846	broad.mit.edu	37	11	77991912	77991912	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	77991912	G	A	77991912	2	1	623	1	0	0	0	0	0	0	0	1	6156	1190	42	2		2	GAB2	11	77991912	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	1124891	77991912	57014604	68	36658											
SBNO1	55206	broad.mit.edu	37	12	123780522	123780522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	123780522	G	A	123780522	3	1	623	1	0	0	0	0	1	0	0	0	13875	1087	38	1	70	1	SBNO1	12	123780522	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08		123780522	10071373	69	36659											
ZC3H13	23091	broad.mit.edu;bcgsc.ca	37	13	46543501	46543502	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	46543502	-	T	46543501	7	5	623	1	0	1	1	0	0	0	0	0	17577	922	32	0	1532	0	ZC3H13	13	46543501	Frame_Shift_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08		46543501	68626377	70	36660											
DACH1	1602	hgsc.bcm.edu	37	13	72440673	72440673	+	Missense_Mutation	SNP	C	C	T	rs200162861		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	72440673	C	T	72440673	3	4	623	1	0	0	0	0	1	0	0	0	4222	652	23	1	1935	1	DACH1	13	72440673	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	25897172	72440673	42729205	71	36661											
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	77799654	77799654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	77799654	T	C	77799654	3	2	623	1	0	0	0	0	1	0	0	0	10025	1821	63	3	11523	3	MYCBP2	13	77799654	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	5358981	77799654	37370224	72	36662											
COCH	1690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31355476	31355476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	31355476	T	C	31355476	3	2	623	1	0	0	0	0	1	0	0	0	3658	1522	53	3	1473	3	COCH	14	31355476	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		31355476	75994064	73	36663											
MBIP	51562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	36770005	36770006	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	36770006	-	T	36770005	7	5	623	1	0	1	1	0	0	0	0	0	9356	565	20	0	129	0	MBIP	14	36770005	Frame_Shift_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08	5414529	36770005	70579535	74	36664											
FERMT2	10979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53360052	53360052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	C	53360052	T	C	53360052	3	2	623	1	0	0	0	0	1	0	0	0	5825	1551	54	3	1642	3	FERMT2	14	53360052	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	16590047	53360052	53989488	75	36665											
MRPL46	26589	broad.mit.edu	37	15	89008985	89008985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	89008985	A	G	89008985	3	3	623	1	0	0	0	0	1	0	0	0	9817	188	7	3	603	3	MRPL46	15	89008985	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08		89008985	13522407	76	36666											
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1718163	1718163	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	1718163	C	T	1718163	2	4	623	1	0	0	0	0	0	0	0	1	3848	816	29	2		2	CRAMP1L	16	1718163	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08		1718163	88636590	77	36667											
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14342808	14342808	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	14342808	C	G	14342808	3	3	623	1	0	0	0	0	1	0	0	0	9609	565	20	4	2165	4	MKL2	16	14342808	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	12624645	14342808	76011945	78	36668											
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53636027	53636027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	53636027	C	A	53636027	3	1	623	1	0	0	0	0	1	0	0	0	13563	564	20	4	42	4	RPGRIP1L	16	53636027	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	39293219	53636027	36718726	79	36669											
ELMO3	79767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	67236330	67236330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	67236330	T	G	67236330	3	3	623	1	0	0	0	0	1	0	0	0	5069	1464	51	5	1505	5	ELMO3	16	67236330	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	13600303	67236330	23118423	80	36670											
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	76587277	76587278	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	GC	76587278	-	GC	76587277	7	5	623	1	0	1	1	0	0	0	0	0	3651	991	35	0	3639	0	CNTNAP4	16	76587277	Frame_Shift_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08	9350947	76587277	13767476	81	36671											
CDK5RAP3	80279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46051766	46051766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	46051766	G	A	46051766	3	1	623	1	0	0	0	0	1	0	0	0	3149	1188	41	2	304	2	CDK5RAP3	17	46051766	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08		46051766	35143444	82	36672											
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58525181	58525181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	58525181	C	A	58525181	3	1	623	1	0	0	0	0	1	0	0	0	816	594	21	4	242	4	APPBP2	17	58525181	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	12473415	58525181	22670029	83	36673											
CNDP2	55748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	72179734	72179734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	72179734	C	A	72179734	3	1	623	1	0	0	0	0	1	0	0	0	3596	710	25	4	731	4	CNDP2	18	72179734	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08		72179734	5897514	84	36674											
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74561610	74561610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	74561610	G	A	74561610	3	1	623	1	0	0	0	0	1	0	0	0	17801	1059	37	1	184	1	ZNF236	18	74561610	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	2381876	74561610	3515638	85	36675											
FAM108A1	81926	hgsc.bcm.edu	37	19	1881550	1881550	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	1881550	G	A	1881550	2	1	623	1	0	0	0	0	0	0	0	1	5395	962	34	2		2	FAM108A1	19	1881550	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08		1881550	57247433	86	36676											
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	8527467	T	G	8527467	5	3	623	1	0	0	0	0	0	0	1	0	7278	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-EV-5902-01A-11D-1589-08	6645917	8527467	50601516	87	36677											
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8609279	8609279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	8609279	C	A	8609279	3	1	623	1	0	0	0	0	1	0	0	0	10080	913	32	4	1930	4	MYO1F	19	8609279	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	81812	8609279	50519704	88	36678											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13397703	13397703	+	Missense_Mutation	SNP	C	C	T	rs200850308		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	13397703	C	T	13397703	3	4	623	1	0	0	0	0	1	0	0	0	2540	768	27	1	4567	1	CACNA1A	19	13397703	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	4788424	13397703	45731280	89	36679											
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40541550	40541550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	40541550	G	T	40541550	3	4	623	1	0	0	0	0	1	0	0	0	18165	1299	45	4	1289	4	ZNF780B	19	40541550	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	27143847	40541550	18587433	90	36680											
RPL18	6141	ucsc.edu	37	19	49118705	49118705	+	Splice_Site	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	49118705	C	T	49118705	5	4	623	1	0	0	0	0	0	0	1	0	13577	927	32	2	79	2	RPL18	19	49118705	Splice_Site	SNP	C	TCGA-EV-5902-01A-11D-1589-08	8577155	49118705	10010278	91	36681											
ZNF320	162967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53384942	53384942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	G	53384942	A	G	53384942	3	3	623	1	0	0	0	0	1	0	0	0	17851	131	5	3	1096	3	ZNF320	19	53384942	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	4266237	53384942	5744041	92	36682											
ZSCAN22	342945	broad.mit.edu;bcgsc.ca	37	19	58849878	58849878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	58849878	G	A	58849878	3	1	623	1	0	0	0	0	1	0	0	0	18246	1145	40	1	668	1	ZSCAN22	19	58849878	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	5464936	58849878	279105	93	36683											
PLK1S1	55857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	21142793	21142793	+	Silent	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	21142793	T	A	21142793	2	1	623	1	0	0	0	0	0	0	0	1	12102	1538	54	5		5	PLK1S1	20	21142793	Silent	SNP	T	TCGA-EV-5902-01A-11D-1589-08		21142793	41882727	94	36684											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22656582	22656582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	22656582	G	T	22656582	3	4	623	1	0	0	0	0	1	0	0	0	10210	1261	44	4	209	4	NCAM2	21	22656582	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08		22656582	25473313	95	36685											
TTC3	7267	broad.mit.edu	37	21	38536463	38536463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	38536463	G	A	38536463	3	1	623	1	0	0	0	0	1	0	0	0	16709	1087	38	1	3403	1	TTC3	21	38536463	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	15879881	38536463	9593432	96	36686											
BCL2L13	23786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18138590	18138590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	18138590	C	T	18138590	3	4	623	1	0	0	0	0	1	0	0	0	1371	838	29	2	115	2	BCL2L13	22	18138590	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08		18138590	33165976	97	36687											
PI4KA	5297	bcgsc.ca	37	22	21073055	21073055	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	A	21073055	G	A	21073055	2	1	623	1	0	0	0	0	0	0	0	1	11880	1103	39	1		1	PI4KA	22	21073055	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	2934465	21073055	30231511	98	36688											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30067890	30067905	+	Frame_Shift_Del	DEL	AGGCTGCTGCAGATGA	AGGCTGCTGCAGATGA	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AGGCTGCTGCAGATGA	AGGCTGCTGCAGATGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	-	30067905	AGGCTGCTGCAGATGA	-	30067890	7	5	623	1	0	1	0	1	0	0	0	0	10364	295	11	0	1117	0	NF2	22	30067890	Frame_Shift_Del	DEL	AGGCTGCTGCAGATGA	TCGA-EV-5902-01A-11D-1589-08	8994835	30067890	21236676	99	36689											
GAGE2A	729447	broad.mit.edu	37	X	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT	rs33925578		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	TAT	49208296	-	TAT	49208295	7	5	623	1	0	1	1	0	0	0	0	0	6197	668	24	0	236	0	GAGE2A	23	49208295	In_Frame_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08		49208295	106062265	100	36690											
ZDHHC9	51114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	128963040	128963040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	T	128963040	G	T	128963040	3	4	623	1	0	0	0	0	1	0	0	0	17634	1377	48	4	881	4	ZDHHC9	23	128963040	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	79754745	128963040	26307520	101	36691											
VPS13D	55187	bcgsc.ca	37	1	12304650	12304650	+	Silent	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	12304650	T	C	12304650	2	2	624	1	0	0	0	0	0	0	0	1	17204	1741	61	3		3	VPS13D	1	12304650	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08		12304650	236945971	1	36692											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62550317	62550317	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	62550317	C	T	62550317	2	4	624	1	0	0	0	0	0	0	0	1	7738	668	24	2		2	INADL	1	62550317	Silent	SNP	C	TCGA-EV-5903-01A-11D-1589-08	50245667	62550317	186700304	2	36693											
LY9	4063	broad.mit.edu	37	1	160783509	160783509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	160783509	G	A	160783509	3	1	624	1	0	0	0	0	1	0	0	0	9108	1145	40	1	680	1	LY9	1	160783509	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	98233192	160783509	88467112	3	36694											
LRRC52	440699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	165514059	165514059	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	165514059	C	G	165514059	3	3	624	1	0	0	0	0	1	0	0	0	9017	912	32	4	528	4	LRRC52	1	165514059	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	4730550	165514059	83736562	4	36695											
OR2L8	391190	hgsc.bcm.edu	37	1	248112762	248112763	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	-	248112763	TG	-	248112762	7	5	624	1	0	1	0	1	0	0	0	0	11016	1693	59	0	605	0	OR2L8	1	248112762	Frame_Shift_Del	DEL	TG	TCGA-EV-5903-01A-11D-1589-08	82598703	248112762	1137859	5	36696											
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27322367	27322367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	27322367	T	C	27322367	3	2	624	1	0	0	0	0	1	0	0	0	8156	1841	64	3	898	3	KHK	2	27322367	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08		27322367	215877006	6	36697											
DNAJC5G	285126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27503082	27503082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	27503082	A	T	27503082	3	4	624	1	0	0	0	0	1	0	0	0	4654	369	13	5	583	5	DNAJC5G	2	27503082	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	180715	27503082	215696291	7	36698											
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33359941	33359941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	33359941	A	C	33359941	3	2	624	1	0	0	0	0	1	0	0	0	9080	43	2	5	1188	5	LTBP1	2	33359941	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	5856859	33359941	209839432	8	36699											
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86371396	86371396	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	86371396	C	G	86371396	3	3	624	1	0	0	0	0	1	0	0	0	7725	922	32	4	8	4	IMMT	2	86371396	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	53011455	86371396	156827977	9	36700											
ASTL	431705	broad.mit.edu;bcgsc.ca	37	2	96789883	96789883	+	Silent	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	96789883	G	C	96789883	2	2	624	1	0	0	0	0	0	0	0	1	1063	1103	39	4		4	ASTL	2	96789883	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08	10418487	96789883	146409490	10	36701											
POTEE	445582	hgsc.bcm.edu;broad.mit.edu	37	2	132020929	132020929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	132020929	T	G	132020929	3	3	624	1	0	0	0	0	1	0	0	0	12271	1623	56	5	1959	5	POTEE	2	132020929	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	35231046	132020929	111178444	11	36702											
NEB	4703	hgsc.bcm.edu	37	2	152553243	152553243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	152553243	A	G	152553243	3	3	624	1	0	0	0	0	1	0	0	0	10309	420	15	3	24873	3	NEB	2	152553243	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	20532314	152553243	90646130	12	36703											
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	180810243	180810243	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	180810243	A	G	180810243	2	3	624	1	0	0	0	0	0	0	0	1	4070	407	15	3		3	CWC22	2	180810243	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08	28257000	180810243	62389130	13	36704											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	212295693	212295693	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	212295693	C	A	212295693	4	1	624	1	0	0	0	0	0	1	0	0	5211	922	32	4	1338	4	ERBB4	2	212295693	Nonsense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	31485450	212295693	30903680	14	36705											
ARPC2	10109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219103554	219103554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	219103554	T	A	219103554	3	1	624	1	0	0	0	0	1	0	0	0	971	1754	61	5	454	5	ARPC2	2	219103554	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	6807861	219103554	24095819	15	36706											
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239988463	239988463	+	Silent	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	239988463	A	T	239988463	2	4	624	1	0	0	0	0	0	0	0	1	7016	10	1	5		5	HDAC4	2	239988463	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08	20884909	239988463	3210910	16	36707											
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242433435	242433435	+	Silent	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	242433435	G	C	242433435	2	2	624	1	0	0	0	0	0	0	0	1	5684	1277	45	4		4	FARP2	2	242433435	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08	2444972	242433435	765938	17	36708											
EOMES	8320	hgsc.bcm.edu	37	3	27762953	27762953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	27762953	A	G	27762953	3	3	624	1	0	0	0	0	1	0	0	0	5149	304	11	3	1251	3	EOMES	3	27762953	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08		27762953	170259477	18	36709											
CLASP2	23122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33552091	33552091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	33552091	G	T	33552091	3	4	624	1	0	0	0	0	1	0	0	0	3457	991	35	4	256	4	CLASP2	3	33552091	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	5789138	33552091	164470339	19	36710											
USP19	10869	broad.mit.edu;ucsc.edu	37	3	49155544	49155544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	49155544	G	A	49155544	3	1	624	1	0	0	0	0	1	0	0	0	17062	942	33	2	3918	2	USP19	3	49155544	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	15603453	49155544	148866886	20	36711											
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49159166	49159166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	49159166	G	A	49159166	3	1	624	1	0	0	0	0	1	0	0	0	8618	1319	46	2	357	2	LAMB2	3	49159166	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	3622	49159166	148863264	21	36712											
ABI3BP	25890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	100593699	100593699	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	100593699	A	C	100593699	3	2	624	1	0	0	0	0	1	0	0	0	91	304	11	5	2418	5	ABI3BP	3	100593699	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	51434533	100593699	97428731	22	36713											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121260262	121260262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	121260262	C	A	121260262	3	1	624	1	0	0	0	0	1	0	0	0	12215	710	25	4	7476	4	POLQ	3	121260262	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	20666563	121260262	76762168	23	36714											
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172227069	172227069	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	172227069	G	C	172227069	3	2	624	1	0	0	0	0	1	0	0	0	16313	1000	35	4	497	4	TNFSF10	3	172227069	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	50966807	172227069	25795361	24	36715											
YEATS2	55689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183508727	183508727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	183508727	T	C	183508727	3	2	624	1	0	0	0	0	1	0	0	0	17484	1696	59	3	3134	3	YEATS2	3	183508727	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	11281658	183508727	14513703	25	36716											
FGF12	2257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	192078247	192078247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	192078247	C	A	192078247	3	1	624	1	0	0	0	0	1	0	0	0	5848	826	29	4	467	4	FGF12	3	192078247	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	8569520	192078247	5944183	26	36717											
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	1165206	1165206	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	1165206	A	T	1165206	3	4	624	1	0	0	0	0	1	0	0	0	15095	72	3	5	722	5	SPON2	4	1165206	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08		1165206	189989070	27	36718											
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	141560501	141560501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	141560501	T	C	141560501	3	2	624	1	0	0	0	0	1	0	0	0	15639	1638	57	3	1413	3	TBC1D9	4	141560501	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	140395295	141560501	49593775	28	36719											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	155180741	155180741	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	-	155180741	C	-	155180741	7	5	624	1	0	1	0	1	0	0	0	0	4290	739	26	0	3394	0	DCHS2	4	155180741	Frame_Shift_Del	DEL	C	TCGA-EV-5903-01A-11D-1589-08	13620240	155180741	35973535	29	36720											
TMEM161B	153396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	87521633	87521633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	87521633	A	G	87521633	3	3	624	1	0	0	0	0	1	0	0	0	16089	101	4	3	1257	3	TMEM161B	5	87521633	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08		87521633	93393627	30	36721											
GALNT10	55568	broad.mit.edu	37	5	153755873	153755873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	153755873	T	C	153755873	3	2	624	1	0	0	0	0	1	0	0	0	6215	1609	56	3	623	3	GALNT10	5	153755873	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	66234240	153755873	27159387	31	36722											
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	169724562	169724562	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	169724562	G	C	169724562	3	2	624	1	0	0	0	0	1	0	0	0	8699	1368	48	4	1631	4	LCP2	5	169724562	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	15968689	169724562	11190698	32	36723											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176639042	176639042	+	Silent	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	176639042	T	C	176639042	2	2	624	1	0	0	0	0	0	0	0	1	10676	1799	63	3		3	NSD1	5	176639042	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	6914480	176639042	4276218	33	36724											
NUP153	9972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	17688708	17688708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	17688708	G	A	17688708	3	1	624	1	0	0	0	0	1	0	0	0	10762	1348	47	2	4258	2	NUP153	6	17688708	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08		17688708	153426359	34	36725											
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27420017	27420017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	27420017	T	C	27420017	3	2	624	1	0	0	0	0	1	0	0	0	17763	1638	57	3	938	3	ZNF184	6	27420017	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	9731309	27420017	143695050	35	36726											
RGL2	5863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33260849	33260849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	33260849	T	C	33260849	3	2	624	1	0	0	0	0	1	0	0	0	13290	1406	49	3	394	3	RGL2	6	33260849	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	5840832	33260849	137854218	36	36727											
ENPP4	22875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46108114	46108114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	46108114	T	G	46108114	3	3	624	1	0	0	0	0	1	0	0	0	5134	1821	63	5	796	5	ENPP4	6	46108114	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	12847265	46108114	125006953	37	36728											
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83862020	83862020	+	Silent	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	83862020	T	A	83862020	2	1	624	1	0	0	0	0	0	0	0	1	4709	1567	55	5		5	DOPEY1	6	83862020	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	37753906	83862020	87253047	38	36729											
CDC40	51362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110528715	110528715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	110528715	C	T	110528715	3	4	624	1	0	0	0	0	1	0	0	0	3072	710	25	2	427	2	CDC40	6	110528715	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	26666695	110528715	60586352	39	36730											
SLC16A10	117247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	111409219	111409219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	111409219	G	T	111409219	3	4	624	1	0	0	0	0	1	0	0	0	14416	933	33	4	266	4	SLC16A10	6	111409219	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	880504	111409219	59705848	40	36731											
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136693761	136693761	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	-	136693761	A	-	136693761	7	5	624	1	0	1	0	1	0	0	0	0	9273	333	12	0	1539	0	MAP7	6	136693761	Frame_Shift_Del	DEL	A	TCGA-EV-5903-01A-11D-1589-08	25284542	136693761	34421306	41	36732											
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	146264642	146264642	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	-	146264642	T	-	146264642	7	5	624	1	0	1	0	1	0	0	0	0	14304	1606	56	0	3308	0	SHPRH	6	146264642	Frame_Shift_Del	DEL	T	TCGA-EV-5903-01A-11D-1589-08	9570881	146264642	24850425	42	36733											
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	12679988	12679988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	12679988	G	A	12679988	3	1	624	1	0	0	0	0	1	0	0	0	13918	1203	42	2	1469	2	SCIN	7	12679988	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08		12679988	146458675	43	36734											
DNAH11	8701	ucsc.edu;bcgsc.ca	37	7	21784089	21784089	+	Missense_Mutation	SNP	G	G	A	rs28549882	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	21784089	G	A	21784089	3	1	624	1	0	0	0	0	1	0	0	0	4601	1000	35	2	8408	2	DNAH11	7	21784089	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	9104101	21784089	137354574	44	36735											
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100187679	100187679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	100187679	A	C	100187679	3	2	624	1	0	0	0	0	1	0	0	0	5742	188	7	5	282	5	FBXO24	7	100187679	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	78403590	100187679	58950984	45	36736											
IMMP2L	83943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	111127299	111127299	+	Silent	SNP	T	T	A	rs201012120	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	111127299	T	A	111127299	2	1	624	1	0	0	0	0	0	0	0	1	7724	1451	51	5		5	IMMP2L	7	111127299	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	10939620	111127299	48011364	46	36737											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	7	149509420	149509420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	149509420	G	A	149509420	3	1	624	1	0	0	0	0	1	0	0	0	15201	1116	39	1	10086	1	SSPO	7	149509420	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	38382121	149509420	9629243	47	36738											
ATP6V1B2	526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	20068802	20068802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	20068802	C	T	20068802	3	4	624	1	0	0	0	0	1	0	0	0	1179	913	32	2	600	2	ATP6V1B2	8	20068802	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		20068802	126295220	48	36739											
SFTPC	6440	bcgsc.ca	37	8	22020986	22020986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	22020986	G	T	22020986	3	4	624	1	0	0	0	0	1	0	0	0	14205	1319	46	4	376	4	SFTPC	8	22020986	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	1952184	22020986	124343036	49	36740											
PROSC	11212	broad.mit.edu	37	8	37630321	37630321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	37630321	C	T	37630321	3	4	624	1	0	0	0	0	1	0	0	0	12569	710	25	2	386	2	PROSC	8	37630321	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	15609335	37630321	108733701	50	36741											
RRS1	23212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	67342373	67342373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	67342373	G	A	67342373	3	1	624	1	0	0	0	0	1	0	0	0	13705	1232	43	2	1009	2	RRS1	8	67342373	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	29712052	67342373	79021649	51	36742											
COLEC10	10584	broad.mit.edu	37	8	120114630	120114630	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	120114630	A	G	120114630	2	3	624	1	0	0	0	0	0	0	0	1	3712	69	3	3		3	COLEC10	8	120114630	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08	52772257	120114630	26249392	52	36743											
C9orf72	203228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	27548367	27548367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	27548367	T	A	27548367	3	1	624	1	0	0	0	0	1	0	0	0	2497	1435	50	5	136	5	C9orf72	9	27548367	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08		27548367	113665064	53	36744											
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	33319104	33319106	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	-	33319106	CCT	-	33319104	7	5	624	1	0	1	0	1	0	0	0	0	10394	739	26	0	1919	0	NFX1	9	33319104	In_Frame_Del	DEL	CCT	TCGA-EV-5903-01A-11D-1589-08	5770737	33319104	107894327	54	36745											
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36170075	36170075	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	36170075	C	T	36170075	2	4	624	1	0	0	0	0	0	0	0	1	2880	813	29	2		2	CCIN	9	36170075	Silent	SNP	C	TCGA-EV-5903-01A-11D-1589-08	2850971	36170075	105043356	55	36746											
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	96416716	96416716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	96416716	A	C	96416716	3	2	624	1	0	0	0	0	1	0	0	0	11837	217	8	5	837	5	PHF2	9	96416716	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	60246641	96416716	44796715	56	36747											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107599352	107599352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	107599352	G	T	107599352	3	4	624	1	0	0	0	0	1	0	0	0	28	971	34	4	5725	4	ABCA1	9	107599352	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	11182636	107599352	33614079	57	36748											
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131755475	131755475	+	Splice_Site	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	131755475	G	A	131755475	5	1	624	1	0	0	0	0	0	0	1	0	10765	1014	35	2	2742	2	NUP188	9	131755475	Splice_Site	SNP	G	TCGA-EV-5903-01A-11D-1589-08	24156123	131755475	9457956	58	36749											
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132618631	132618631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	132618631	T	A	132618631	3	1	624	1	0	0	0	0	1	0	0	0	17064	1580	55	5	133	5	USP20	9	132618631	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	863156	132618631	8594800	59	36750											
ABL1	25	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	133730265	133730265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	133730265	G	C	133730265	3	2	624	1	0	0	0	0	1	0	0	0	92	1261	44	4	481	4	ABL1	9	133730265	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	1111634	133730265	7483166	60	36751											
ABL1	25	broad.mit.edu	37	9	133750315	133750315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	133750315	T	G	133750315	3	3	624	1	0	0	0	0	1	0	0	0	92	1809	63	5	1312	5	ABL1	9	133750315	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	20050	133750315	7463116	61	36752											
LARP4B	23185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	858887	858887	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	858887	A	G	858887	2	3	624	1	0	0	0	0	0	0	0	1	8638	291	11	3		3	LARP4B	10	858887	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08		858887	134675860	62	36753											
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3191832	3191832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	3191832	A	C	3191832	3	2	624	1	0	0	0	0	1	0	0	0	11960	72	3	5	1309	5	PITRM1	10	3191832	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	2332945	3191832	132342915	63	36754											
CSGALNACT2	55454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43651227	43651227	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	43651227	A	G	43651227	2	3	624	1	0	0	0	0	0	0	0	1	3941	40	2	3		3	CSGALNACT2	10	43651227	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08	40459395	43651227	91883520	64	36755											
POLR3A	11128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	79741971	79741971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	79741971	C	G	79741971	3	3	624	1	0	0	0	0	1	0	0	0	12235	739	26	4	488	4	POLR3A	10	79741971	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	36090744	79741971	55792776	65	36756											
KIAA1598	57698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118689489	118689489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	118689489	C	T	118689489	3	4	624	1	0	0	0	0	1	0	0	0	8253	922	32	2	1044	2	KIAA1598	10	118689489	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	38947518	118689489	16845258	66	36757	473	2									
KIAA1598	57698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118689491	118689491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	118689491	A	G	118689491	3	3	624	1	0	0	0	0	1	0	0	0	8253	420	15	3	1046	3	KIAA1598	10	118689491	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	2	118689491	16845256	67	36758	473	2									
GLRX3	10539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	131964822	131964822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	131964822	G	T	131964822	3	4	624	1	0	0	0	0	1	0	0	0	6468	971	34	4	548	4	GLRX3	10	131964822	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	13275331	131964822	3569925	68	36759											
LRRC56	115399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	552211	552211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	552211	C	T	552211	3	4	624	1	0	0	0	0	1	0	0	0	9019	739	26	2	1194	2	LRRC56	11	552211	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		552211	134454305	69	36760											
OR51A7	119687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4929158	4929158	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	4929158	C	T	4929158	2	4	624	1	0	0	0	0	0	0	0	1	11095	796	28	2		2	OR51A7	11	4929158	Silent	SNP	C	TCGA-EV-5903-01A-11D-1589-08	4376947	4929158	130077358	70	36761											
TPP1	1200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6640045	6640045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	6640045	A	C	6640045	3	2	624	1	0	0	0	0	1	0	0	0	16423	188	7	5	1544	5	TPP1	11	6640045	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	1710887	6640045	128366471	71	36762											
F2	2147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46740795	46740795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	46740795	G	A	46740795	3	1	624	1	0	0	0	0	1	0	0	0	5344	1145	40	1	12	1	F2	11	46740795	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	40100750	46740795	88265721	72	36763											
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66627368	66627368	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	66627368	T	A	66627368	4	1	624	1	0	0	0	0	0	1	0	0	8947	1821	63	5	1616	5	LRFN4	11	66627368	Nonsense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	19886573	66627368	68379148	73	36764											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877690	82877690	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	82877690	A	T	82877690	3	4	624	1	0	0	0	0	1	0	0	0	11580	101	4	5	1769	5	PCF11	11	82877690	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	16250322	82877690	52128826	74	36765											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82878314	82878314	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	82878314	G	C	82878314	3	2	624	1	0	0	0	0	1	0	0	0	11580	1020	36	4	1987	4	PCF11	11	82878314	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	624	82878314	52128202	75	36766											
TRIM49	57093	hgsc.bcm.edu	37	11	89537575	89537575	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	89537575	G	C	89537575	4	2	624	1	0	0	0	0	0	1	0	0	16536	1024	36	4	1319	4	TRIM49	11	89537575	Nonsense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	6659261	89537575	45468941	76	36767											
RPUSD4	84881	broad.mit.edu	37	11	126079570	126079570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	126079570	C	T	126079570	3	4	624	1	0	0	0	0	1	0	0	0	13682	739	26	2	750	2	RPUSD4	11	126079570	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	36541995	126079570	8926946	77	36768											
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	346349	346349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	346349	C	G	346349	3	3	624	1	0	0	0	0	1	0	0	0	14689	595	21	4	1177	4	SLC6A13	12	346349	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		346349	133505546	78	36769											
DCP1B	196513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2064679	2064679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	2064679	G	C	2064679	3	2	624	1	0	0	0	0	1	0	0	0	4301	932	33	4	1299	4	DCP1B	12	2064679	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	1718330	2064679	131787216	79	36770											
DDX47	51202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12980185	12980185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	12980185	A	C	12980185	3	2	624	1	0	0	0	0	1	0	0	0	4367	333	12	5	1154	5	DDX47	12	12980185	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	10915506	12980185	120871710	80	36771											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26810769	26810769	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	26810769	A	T	26810769	3	4	624	1	0	0	0	0	1	0	0	0	7928	101	4	5	6202	5	ITPR2	12	26810769	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	13830584	26810769	107041126	81	36772											
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40265609	40265609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	40265609	T	C	40265609	3	2	624	1	0	0	0	0	1	0	0	0	14555	1522	53	3	781	3	SLC2A13	12	40265609	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	13454840	40265609	93586286	82	36773											
CCNT1	904	broad.mit.edu	37	12	49088009	49088009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	49088009	G	A	49088009	3	1	624	1	0	0	0	0	1	0	0	0	2936	1203	42	2	1196	2	CCNT1	12	49088009	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	8822400	49088009	84763886	83	36774											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57891971	57891971	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	57891971	A	C	57891971	3	2	624	1	0	0	0	0	1	0	0	0	9323	217	8	5	832	5	MARS	12	57891971	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	8803962	57891971	75959924	84	36775											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	78513435	78513436	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	78513436	-	G	78513435	7	5	624	1	0	1	1	0	0	0	0	0	10192	291	11	0	3517	0	NAV3	12	78513435	Frame_Shift_Ins	INS	-	TCGA-EV-5903-01A-11D-1589-08	20621464	78513435	55338460	85	36776											
PEBP1	5037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118577332	118577332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	118577332	G	T	118577332	3	4	624	1	0	0	0	0	1	0	0	0	11720	1232	43	4	332	4	PEBP1	12	118577332	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	40063897	118577332	15274563	86	36777											
PSPC1	55269	hgsc.bcm.edu;bcgsc.ca	37	13	20356720	20356720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	20356720	C	T	20356720	3	4	624	1	0	0	0	0	1	0	0	0	12726	864	30	2	1429	2	PSPC1	13	20356720	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		20356720	94813158	87	36778											
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21821861	21821861	+	Splice_Site	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	21821861	C	T	21821861	5	4	624	1	0	0	0	0	0	0	1	0	15408	521	18	2	234	2	SUPT16H	14	21821861	Splice_Site	SNP	C	TCGA-EV-5903-01A-11D-1589-08		21821861	85527679	88	36779											
OR4E2	26686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	22133796	22133796	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	22133796	C	G	22133796	3	3	624	1	0	0	0	0	1	0	0	0	11067	681	24	4	502	4	OR4E2	14	22133796	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	311935	22133796	85215744	89	36780											
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24036472	24036472	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	-	24036472	C	-	24036472	7	5	624	1	0	1	0	1	0	0	0	0	733	739	26	0	2389	0	AP1G2	14	24036472	Frame_Shift_Del	DEL	C	TCGA-EV-5903-01A-11D-1589-08	1902676	24036472	83313068	90	36781											
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51219341	51219341	+	Silent	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	51219341	T	A	51219341	2	1	624	1	0	0	0	0	0	0	0	1	10424	1567	55	5		5	NIN	14	51219341	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	27182869	51219341	56130199	91	36782											
MNAT1	4331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61434986	61434986	+	Silent	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	61434986	T	C	61434986	2	2	624	1	0	0	0	0	0	0	0	1	9681	1799	63	3		3	MNAT1	14	61434986	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	10215645	61434986	45914554	92	36783											
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73733497	73733497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	73733497	T	C	73733497	3	2	624	1	0	0	0	0	1	0	0	0	11435	1821	63	3	3467	3	PAPLN	14	73733497	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	12298511	73733497	33616043	93	36784											
DLK1	8788	broad.mit.edu	37	14	101198410	101198410	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	101198410	C	T	101198410	2	4	624	1	0	0	0	0	0	0	0	1	4566	581	21	2		2	DLK1	14	101198410	Silent	SNP	C	TCGA-EV-5903-01A-11D-1589-08	27464913	101198410	6151130	94	36785											
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78474881	78474881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	78474881	T	G	78474881	3	3	624	1	0	0	0	0	1	0	0	0	173	1725	60	5	1385	5	ACSBG1	15	78474881	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08		78474881	24056511	95	36786											
SOLH	6650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	599030	599030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	599030	G	A	599030	3	1	624	1	0	0	0	0	1	0	0	0	14938	1232	43	2	1493	2	SOLH	16	599030	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08		599030	89755723	96	36787											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	2059674	T	C	2059674	3	2	624	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	1460644	2059674	88295079	97	36788											
CORO7	79585	ucsc.edu	37	16	4405363	4405363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	4405363	G	A	4405363	3	1	624	1	0	0	0	0	1	0	0	0	3761	1203	42	2	89	2	CORO7	16	4405363	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	2345689	4405363	85949390	98	36789											
TMEM186	25880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	8890423	8890423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	8890423	T	C	8890423	3	2	624	1	0	0	0	0	1	0	0	0	16120	1521	53	3	617	3	TMEM186	16	8890423	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	4485060	8890423	81464330	99	36790											
SPNS1	83985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28989282	28989282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	28989282	A	G	28989282	3	3	624	1	0	0	0	0	1	0	0	0	15086	179	7	3	371	3	SPNS1	16	28989282	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	20098859	28989282	61365471	100	36791											
MT1B	4490	ucsc.edu	37	16	56686910	56686910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	56686910	G	A	56686910	3	1	624	1	0	0	0	0	1	0	0	0	9905	1203	42	2	129	2	MT1B	16	56686910	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	27697628	56686910	33667843	101	36792											
PMFBP1	83449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72198700	72198700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	72198700	T	C	72198700	3	2	624	1	0	0	0	0	1	0	0	0	12141	1493	52	3	3031	3	PMFBP1	16	72198700	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	15511790	72198700	18156053	102	36793											
AIPL1	23746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6328845	6328845	+	Missense_Mutation	SNP	C	C	T	rs201875142	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	6328845	C	T	6328845	3	4	624	1	0	0	0	0	1	0	0	0	436	768	27	1	68	1	AIPL1	17	6328845	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		6328845	74866365	103	36794			1	78		2	2	24	N	G_C	8.989568e-05
AIPL1	23746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6328868	6328868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	6328868	G	A	6328868	3	1	624	1	0	0	0	0	1	0	0	0	436	1377	48	2	91	2	AIPL1	17	6328868	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	23	6328868	74866342	104	36795			1	78		2	2	24	N	G_C	8.989568e-05
FLCN	201163	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17119717	17119717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	17119717	A	G	17119717	3	3	624	1	0	0	0	0	1	0	0	0	5928	333	12	3	478	3	FLCN	17	17119717	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	10790849	17119717	64075493	105	36796											
MYO15A	51168	hgsc.bcm.edu	37	17	18063318	18063318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	18063318	A	G	18063318	3	3	624	1	0	0	0	0	1	0	0	0	10070	391	14	3	9587	3	MYO15A	17	18063318	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	943601	18063318	63131892	106	36797											
ZNF207	7756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30687743	30687743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	30687743	C	A	30687743	3	1	624	1	0	0	0	0	1	0	0	0	17777	594	21	4	448	4	ZNF207	17	30687743	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	12624425	30687743	50507467	107	36798											
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46266785	46266785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	46266785	C	T	46266785	3	4	624	1	0	0	0	0	1	0	0	0	14368	695	24	2	753	2	SKAP1	17	46266785	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	15579042	46266785	34928425	108	36799											
FN3KRP	79672	broad.mit.edu	37	17	80674717	80674717	+	Missense_Mutation	SNP	G	G	A	rs138953335		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	80674717	G	A	80674717	3	1	624	1	0	0	0	0	1	0	0	0	5971	1116	39	1	88	1	FN3KRP	17	80674717	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	34407932	80674717	520493	109	36800											
PTPRM	5797	broad.mit.edu	37	18	8376563	8376563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	8376563	C	T	8376563	3	4	624	1	0	0	0	0	1	0	0	0	12819	759	27	1	3532	1	PTPRM	18	8376563	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		8376563	69700685	110	36801											
TMX3	54495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	66378637	66378637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	66378637	A	C	66378637	3	2	624	1	0	0	0	0	1	0	0	0	16280	359	13	5	1315	5	TMX3	18	66378637	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	58002074	66378637	11698611	111	36802											
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1785678	1785678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	1785678	C	A	1785678	3	1	624	1	0	0	0	0	1	0	0	0	1196	796	28	4	735	4	ATP8B3	19	1785678	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		1785678	57343305	112	36803											
RINL	126432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39359912	39359925	+	Frame_Shift_Del	DEL	TGCAGCGTCCGCCT	TGCAGCGTCCGCCT	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	TGCAGCGTCCGCCT	TGCAGCGTCCGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	-	39359925	TGCAGCGTCCGCCT	-	39359912	7	5	624	1	0	1	0	1	0	0	0	0	13388	1696	59	0	95	0	RINL	19	39359912	Frame_Shift_Del	DEL	TGCAGCGTCCGCCT	TCGA-EV-5903-01A-11D-1589-08	37574234	39359912	19769071	113	36804											
ALDH16A1	126133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49969107	49969107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	49969107	G	A	49969107	3	1	624	1	0	0	0	0	1	0	0	0	488	1232	43	2	1731	2	ALDH16A1	19	49969107	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	10609195	49969107	9159876	114	36805											
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52659397	52659397	+	Silent	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	52659397	G	A	52659397	2	1	624	1	0	0	0	0	0	0	0	1	18199	1277	45	2		2	ZNF836	19	52659397	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08	2690290	52659397	6469586	115	36806											
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56329449	56329449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	56329449	G	T	56329449	3	4	624	1	0	0	0	0	1	0	0	0	10480	1319	46	4	3045	4	NLRP11	19	56329449	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	3670052	56329449	2799534	116	36807											
ZNF341	84905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32376706	32376706	+	Silent	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	T	32376706	G	T	32376706	2	4	624	1	0	0	0	0	0	0	0	1	17869	1132	40	4		4	ZNF341	20	32376706	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08		32376706	30648814	117	36808											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40730779	40730779	+	Silent	SNP	G	G	A	rs146474971		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	40730779	G	A	40730779	2	1	624	1	0	0	0	0	0	0	0	1	12825	1136	40	1		1	PTPRT	20	40730779	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08	8354073	40730779	22294741	118	36809											
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34922663	34922663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	C	34922663	T	C	34922663	3	2	624	1	0	0	0	0	1	0	0	0	14939	1667	58	3	1136	3	SON	21	34922663	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08		34922663	13207232	119	36810											
PICK1	9463	broad.mit.edu	37	22	38461040	38461040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	38461040	G	A	38461040	3	1	624	1	0	0	0	0	1	0	0	0	11888	1203	42	2	195	2	PICK1	22	38461040	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08		38461040	12843526	120	36811											
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48682180	48682180	+	Silent	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	A	48682180	G	A	48682180	2	1	624	1	0	0	0	0	0	0	0	1	7018	1223	43	2		2	HDAC6	23	48682180	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08		48682180	106588380	121	36812											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	109695935	109695935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	G	109695935	T	G	109695935	3	3	624	1	0	0	0	0	1	0	0	0	13287	1464	51	5	2092	5	RGAG1	23	109695935	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	61013755	109695935	45574625	122	36813											
CGN	57530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151502428	151502428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	151502428	G	A	151502428	3	1	625	1	0	0	0	0	1	0	0	0	3305	1116	39	1	2192	1	CGN	1	151502428	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		151502428	97748193	1	36814											
SHE	126669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154471704	154471704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	G	154471704	A	G	154471704	3	3	625	1	0	0	0	0	1	0	0	0	14289	372	13	3	905	3	SHE	1	154471704	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10	2969276	154471704	94778917	2	36815											
OR10J5	127385	broad.mit.edu	37	1	159505502	159505502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	159505502	G	A	159505502	3	1	625	1	0	0	0	0	1	0	0	0	10919	1377	48	2	635	2	OR10J5	1	159505502	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	5033798	159505502	89745119	3	36816											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169094224	169094232	+	In_Frame_Del	DEL	AAAAGTACA	AAAAGTACA	-	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	AAAAGTACA	AAAAGTACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	-	169094232	AAAAGTACA	-	169094224	7	5	625	1	0	1	0	1	0	0	0	0	1132	246	9	0	339	0	ATP1B1	1	169094224	In_Frame_Del	DEL	AAAAGTACA	TCGA-F9-A4JJ-01A-11D-A25F-10	9588722	169094224	80156397	4	36817											
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201166405	201166405	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	201166405	C	T	201166405	2	4	625	1	0	0	0	0	0	0	0	1	7597	547	19	1		1	IGFN1	1	201166405	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	32072181	201166405	48084216	5	36818											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207669654	207669654	+	Silent	SNP	G	G	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	C	207669654	G	C	207669654	2	2	625	1	0	0	0	0	0	0	0	1	3842	1074	38	4		4	CR1	1	207669654	Silent	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	6503249	207669654	41580967	6	36819											
PROX1	5629	broad.mit.edu;bcgsc.ca	37	1	214170147	214170147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	214170147	C	A	214170147	3	1	625	1	0	0	0	0	1	0	0	0	12570	710	25	4	271	4	PROX1	1	214170147	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	6500493	214170147	35080474	7	36820											
FMN2	56776	hgsc.bcm.edu	37	1	240255571	240255571	+	Silent	SNP	C	C	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	G	240255571	C	G	240255571	2	3	625	1	0	0	0	0	0	0	0	1	5957	755	27	4		4	FMN2	1	240255571	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	26085424	240255571	8995050	8	36821											
FH	2271	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	241661272	241661272	+	Splice_Site	SNP	T	T	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	G	241661272	T	G	241661272	5	3	625	1	0	0	0	0	0	0	1	0	5882	1594	55	5	147	5	FH	1	241661272	Splice_Site	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10	1405701	241661272	7589349	9	36822											
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	77746638	77746638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	77746638	G	T	77746638	3	4	625	1	0	0	0	0	1	0	0	0	9049	1368	48	4	1429	4	LRRTM4	2	77746638	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		77746638	165452735	10	36823											
ATXN7	6314	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	63981359	63981359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	63981359	C	T	63981359	3	4	625	1	0	0	0	0	1	0	0	0	1215	826	29	2	1967	2	ATXN7	3	63981359	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		63981359	134041071	11	36824											
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14497115	14497115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	C	14497115	G	C	14497115	3	2	625	1	0	0	0	0	1	0	0	0	16564	1261	44	4	8206	4	TRIO	5	14497115	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		14497115	166418145	12	36825											
RICTOR	253260	broad.mit.edu	37	5	38947463	38947463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	38947463	G	A	38947463	3	1	625	1	0	0	0	0	1	0	0	0	13371	942	33	2	937	2	RICTOR	5	38947463	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	24450348	38947463	141967797	13	36826											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32037362	32037362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	32037362	C	T	32037362	3	4	625	1	0	0	0	0	1	0	0	0	16358	536	19	1	9278	1	TNXB	6	32037362	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		32037362	139077705	14	36827											
EYA4	2070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	133849920	133849920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	133849920	G	T	133849920	3	4	625	1	0	0	0	0	1	0	0	0	5333	971	34	4	2076	4	EYA4	6	133849920	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	101812558	133849920	37265147	15	36828											
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92932815	92932815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	G	92932815	T	G	92932815	3	3	625	1	0	0	0	0	1	0	0	0	2769	1812	63	5	1513	5	CCDC132	7	92932815	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10		92932815	66205848	16	36829											
FLNC	2318	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128482660	128482660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	128482660	G	A	128482660	3	1	625	1	0	0	0	0	1	0	0	0	5942	1116	39	1	2355	1	FLNC	7	128482660	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	35549845	128482660	30656003	17	36830											
CSMD1	64478	broad.mit.edu	37	8	2808726	2808727	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	G	2808727	-	G	2808726	7	5	625	1	0	1	1	0	0	0	0	0	3946	768	27	0	603	0	CSMD1	8	2808726	Frame_Shift_Ins	INS	-	TCGA-F9-A4JJ-01A-11D-A25F-10		2808726	143555296	18	36831											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	29037680	29037680	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	29037680	G	A	29037680	4	1	625	1	0	0	0	0	0	1	0	0	8282	1124	39	1	4951	1	KIF13B	8	29037680	Nonsense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	26228954	29037680	117326342	19	36832											
WWP1	11059	broad.mit.edu;bcgsc.ca	37	8	87443954	87443954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	87443954	G	A	87443954	3	1	625	1	0	0	0	0	1	0	0	0	17427	1087	38	1	1629	1	WWP1	8	87443954	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	58406274	87443954	58920068	20	36833											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133829702	133829702	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	G	133829702	T	G	133829702	3	3	625	1	0	0	0	0	1	0	0	0	11839	1673	58	5	1539	5	PHF20L1	8	133829702	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10	46385748	133829702	12534320	21	36834											
DIRAS2	54769	ucsc.edu;bcgsc.ca	37	9	93375537	93375537	+	Silent	SNP	C	C	T	rs201919906		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	93375537	C	T	93375537	2	4	625	1	0	0	0	0	0	0	0	1	4533	796	28	2		2	DIRAS2	9	93375537	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		93375537	47837894	22	36835											
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	15688856	15688856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	C	15688856	T	C	15688856	3	2	625	1	0	0	0	0	1	0	0	0	7889	1435	50	3	2071	3	ITGA8	10	15688856	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10		15688856	119845891	23	36836											
TRPM5	29850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2432685	2432685	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	2432685	C	T	2432685	2	4	625	1	0	0	0	0	0	0	0	1	16601	755	27	1		1	TRPM5	11	2432685	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		2432685	132573831	24	36837											
MAML2	84441	hgsc.bcm.edu	37	11	95825362	95825362	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	95825362	C	T	95825362	2	4	625	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825362	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	93392677	95825362	39181154	25	36838			1	79		2	2	46	C		7.267941e-05
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	95825407	C	T	95825407	2	4	625	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825407	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	45	95825407	39181109	26	36839			1	79		2	2	46	C		7.267941e-05
TRPC6	7225	ucsc.edu	37	11	101340201	101340201	+	Missense_Mutation	SNP	C	C	T	rs138519687		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	101340201	C	T	101340201	3	4	625	1	0	0	0	0	1	0	0	0	16595	855	30	2	370	2	TRPC6	11	101340201	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	5514794	101340201	33666315	27	36840											
OR8G5	219865	bcgsc.ca	37	11	124135723	124135723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	C	124135723	T	C	124135723	3	2	625	1	0	0	0	0	1	0	0	0	11243	1725	60	3	1003	3	OR8G5	11	124135723	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10	22795522	124135723	10870793	28	36841											
ACAD8	27034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	134131026	134131026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	134131026	G	A	134131026	3	1	625	1	0	0	0	0	1	0	0	0	110	1203	42	2	820	2	ACAD8	11	134131026	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	9995303	134131026	875490	29	36842											
MYO1A	4640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57440666	57440666	+	Silent	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	57440666	G	A	57440666	2	1	625	1	0	0	0	0	0	0	0	1	10075	1045	37	1		1	MYO1A	12	57440666	Silent	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		57440666	76411229	30	36843											
FREM2	341640	broad.mit.edu;bcgsc.ca	37	13	39438496	39438496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	G	39438496	A	G	39438496	3	3	625	1	0	0	0	0	1	0	0	0	6052	72	3	3	7798	3	FREM2	13	39438496	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10		39438496	75731382	31	36844											
CFL2	1073	hgsc.bcm.edu	37	14	35182529	35182529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	35182529	C	T	35182529	3	4	625	1	0	0	0	0	1	0	0	0	3293	884	31	1	270	1	CFL2	14	35182529	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		35182529	72167011	32	36845											
PRC1	9055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91517424	91517424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	91517424	G	T	91517424	3	4	625	1	0	0	0	0	1	0	0	0	12456	1000	35	4	479	4	PRC1	15	91517424	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		91517424	11013968	33	36846											
DCUN1D3	123879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20871250	20871250	+	Silent	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	20871250	G	A	20871250	2	1	625	1	0	0	0	0	0	0	0	1	4317	1277	45	2		2	DCUN1D3	16	20871250	Silent	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		20871250	69483503	34	36847											
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	61687954	61687954	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	C	61687954	A	C	61687954	3	2	625	1	0	0	0	0	1	0	0	0	3118	101	4	5	445	5	CDH8	16	61687954	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10	40816704	61687954	28666799	35	36848											
RPL13	6137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	89627425	89627425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	89627425	C	T	89627425	3	4	625	1	0	0	0	0	1	0	0	0	13572	759	27	1	60	1	RPL13	16	89627425	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	27939471	89627425	727328	36	36849											
SPAG7	9552	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4871031	4871031	+	Silent	SNP	A	A	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	C	4871031	A	C	4871031	2	2	625	1	0	0	0	0	0	0	0	1	14996	291	11	5		5	SPAG7	17	4871031	Silent	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10		4871031	76324179	37	36850											
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48148253	48148253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	G	48148253	A	G	48148253	3	3	625	1	0	0	0	0	1	0	0	0	7884	449	16	3	728	3	ITGA3	17	48148253	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10	43277222	48148253	33046957	38	36851											
ABCA6	23460	broad.mit.edu;bcgsc.ca	37	17	67081770	67081770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	67081770	C	T	67081770	3	4	625	1	0	0	0	0	1	0	0	0	36	855	30	2	864	2	ABCA6	17	67081770	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	18933517	67081770	14113440	39	36852											
ASXL3	80816	broad.mit.edu;ucsc.edu	37	18	31224902	31224902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	G	31224902	A	G	31224902	3	3	625	1	0	0	0	0	1	0	0	0	1068	43	2	3	192	3	ASXL3	18	31224902	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10		31224902	46852346	40	36853											
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44560193	44560193	+	Silent	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	44560193	G	A	44560193	2	1	625	1	0	0	0	0	0	0	0	1	15694	1020	36	2		2	TCEB3B	18	44560193	Silent	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	13335291	44560193	33517055	41	36854											
ZNF799	90576	ucsc.edu	37	19	12501560	12501560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	C	12501560	T	C	12501560	3	2	625	1	0	0	0	0	1	0	0	0	18178	1783	62	3	283	3	ZNF799	19	12501560	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10		12501560	46627423	42	36855											
ZNF709	163051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12574997	12574997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	12574997	C	T	12574997	3	4	625	1	0	0	0	0	1	0	0	0	18125	681	24	2	190	2	ZNF709	19	12574997	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	73437	12574997	46553986	43	36856											
CILP2	148113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19654855	19654855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	19654855	G	A	19654855	3	1	625	1	0	0	0	0	1	0	0	0	3432	1116	39	1	1531	1	CILP2	19	19654855	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	7079858	19654855	39474128	44	36857											
FPR3	2359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52327625	52327625	+	Silent	SNP	T	T	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	52327625	T	A	52327625	2	1	625	1	0	0	0	0	0	0	0	1	6047	1800	63	5		5	FPR3	19	52327625	Silent	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10	32672770	52327625	6801358	45	36858											
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	36870194	36870194	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	36870194	C	T	36870194	2	4	625	1	0	0	0	0	0	0	0	1	8264	680	24	2		2	KIAA1755	20	36870194	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		36870194	26155326	46	36859											
RBM11	54033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15599303	15599303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	15599303	G	T	15599303	3	4	625	1	0	0	0	0	1	0	0	0	13125	942	33	4	553	4	RBM11	21	15599303	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		15599303	32530592	47	36860											
GRIPAP1	56850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48840222	48840222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	T	48840222	C	T	48840222	3	4	625	1	0	0	0	0	1	0	0	0	6796	864	30	2	1390	2	GRIPAP1	23	48840222	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		48840222	106430338	48	36861											
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	91133625	91133625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	91133625	C	A	91133625	3	1	625	1	0	0	0	0	1	0	0	0	11515	623	22	4	2392	4	PCDH11X	23	91133625	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	42293403	91133625	64136935	49	36862											
LAMP2	3920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119581842	119581842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	A	119581842	G	A	119581842	3	1	625	1	0	0	0	0	1	0	0	0	8625	1261	44	2	948	2	LAMP2	23	119581842	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	28448217	119581842	35688718	50	36863											
CROCC	9696	broad.mit.edu	37	1	17294710	17294710	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	-	17294710	A	-	17294710	7	5	626	1	0	1	0	1	0	0	0	0	3895	131	5	0	4995	0	CROCC	1	17294710	Frame_Shift_Del	DEL	A	TCGA-G7-6789-01A-11D-1961-08		17294710	231955911	1	36864											
SNIP1	79753	ucsc.edu	37	1	38019775	38019775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	A	38019775	C	A	38019775	3	1	626	1	0	0	0	0	1	0	0	0	14861	623	22	4	1150	4	SNIP1	1	38019775	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08	20725065	38019775	211230846	2	36865											
ZNF684	127396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41012446	41012446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	G	41012446	A	G	41012446	3	3	626	1	0	0	0	0	1	0	0	0	18103	412	15	3	465	3	ZNF684	1	41012446	Missense_Mutation	SNP	A	TCGA-G7-6789-01A-11D-1961-08	2992671	41012446	208238175	3	36866											
GBP7	388646	hgsc.bcm.edu	37	1	89598981	89598981	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	A	89598981	T	A	89598981	3	1	626	1	0	0	0	0	1	0	0	0	6286	1406	49	5	302	5	GBP7	1	89598981	Missense_Mutation	SNP	T	TCGA-G7-6789-01A-11D-1961-08	48586535	89598981	159651640	4	36867											
AMPD1	270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115218255	115218255	+	Silent	SNP	G	G	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	C	115218255	G	C	115218255	2	2	626	1	0	0	0	0	0	0	0	1	585	1335	47	4		4	AMPD1	1	115218255	Silent	SNP	G	TCGA-G7-6789-01A-11D-1961-08	25619274	115218255	134032366	5	36868											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	179609042	179609042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	C	179609042	A	C	179609042	3	2	626	1	0	0	0	0	1	0	0	0	15745	217	8	5	1623	5	TDRD5	1	179609042	Missense_Mutation	SNP	A	TCGA-G7-6789-01A-11D-1961-08	64390787	179609042	69641579	6	36869											
PTPRC	5788	broad.mit.edu;bcgsc.ca	37	1	198678927	198678927	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	-	198678927	G	-	198678927	7	5	626	1	0	1	0	1	0	0	0	0	12810	1029	36	0	1188	0	PTPRC	1	198678927	Frame_Shift_Del	DEL	G	TCGA-G7-6789-01A-11D-1961-08	19069885	198678927	50571694	7	36870											
LTBP1	4052	hgsc.bcm.edu	37	2	33172879	33172879	+	Missense_Mutation	SNP	T	T	C	rs62135680		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	C	33172879	T	C	33172879	3	2	626	1	0	0	0	0	1	0	0	0	9080	1580	55	3	490	3	LTBP1	2	33172879	Missense_Mutation	SNP	T	TCGA-G7-6789-01A-11D-1961-08		33172879	210026494	8	36871											
CCDC142	84865	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74702509	74702509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	T	74702509	C	T	74702509	3	4	626	1	0	0	0	0	1	0	0	0	2778	835	29	2	625	2	CCDC142	2	74702509	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08	41529630	74702509	168496864	9	36872											
POLR1B	84172	broad.mit.edu;bcgsc.ca	37	2	113308552	113308559	+	Frame_Shift_Del	DEL	CTTTCTTC	CTTTCTTC	-	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	CTTTCTTC	CTTTCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	-	113308559	CTTTCTTC	-	113308552	7	5	626	1	0	1	0	1	0	0	0	0	12217	912	32	0	753	0	POLR1B	2	113308552	Frame_Shift_Del	DEL	CTTTCTTC	TCGA-G7-6789-01A-11D-1961-08	38606043	113308552	129890821	10	36873											
ALPPL2	251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233272617	233272617	+	Missense_Mutation	SNP	G	G	A	rs145892470		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	A	233272617	G	A	233272617	3	1	626	1	0	0	0	0	1	0	0	0	549	1087	38	1	556	1	ALPPL2	2	233272617	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08	119964065	233272617	9926756	11	36874											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52422876	52422876	+	Silent	SNP	C	C	T	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	T	52422876	C	T	52422876	2	4	626	1	0	0	0	0	0	0	0	1	4599	680	24	2		2	DNAH1	3	52422876	Silent	SNP	C	TCGA-G7-6789-01A-11D-1961-08		52422876	145599554	12	36875											
BEND4	389206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	42146005	42146005	+	Missense_Mutation	SNP	C	C	T	rs200387125		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	T	42146005	C	T	42146005	3	4	626	1	0	0	0	0	1	0	0	0	1400	884	31	1	1126	1	BEND4	4	42146005	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08		42146005	149008271	13	36876											
TMEM161B	153396	broad.mit.edu	37	5	87498782	87498782	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	C	87498782	G	C	87498782	3	2	626	1	0	0	0	0	1	0	0	0	16089	1000	35	4	568	4	TMEM161B	5	87498782	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08		87498782	93416478	14	36877											
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35051232	35051232	+	Silent	SNP	C	C	A	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	A	35051232	C	A	35051232	2	1	626	1	0	0	0	0	0	0	0	1	688	845	30	4		4	ANKS1A	6	35051232	Silent	SNP	C	TCGA-G7-6789-01A-11D-1961-08		35051232	136063835	15	36878											
AHI1	54806	hgsc.bcm.edu	37	6	135759585	135759585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	C	135759585	T	C	135759585	3	2	626	1	0	0	0	0	1	0	0	0	413	1493	52	3	1743	3	AHI1	6	135759585	Missense_Mutation	SNP	T	TCGA-G7-6789-01A-11D-1961-08	100708353	135759585	35355482	16	36879											
FZD1	8321	broad.mit.edu	37	7	90894984	90894984	+	Silent	SNP	G	G	T	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	T	90894984	G	T	90894984	2	4	626	1	0	0	0	0	0	0	0	1	6135	1103	39	4		4	FZD1	7	90894984	Silent	SNP	G	TCGA-G7-6789-01A-11D-1961-08		90894984	68243679	17	36880											
SLC26A3	1811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107415276	107415276	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	G	107415276	T	G	107415276	3	3	626	1	0	0	0	0	1	0	0	0	14531	1606	56	5	599	5	SLC26A3	7	107415276	Missense_Mutation	SNP	T	TCGA-G7-6789-01A-11D-1961-08	16520292	107415276	51723387	18	36881											
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142965268	142965268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	T	142965268	C	T	142965268	3	4	626	1	0	0	0	0	1	0	0	0	6843	710	25	2	812	2	GSTK1	7	142965268	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08	35549992	142965268	16173395	19	36882											
CDKN2A	1029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	21971120	21971120	+	Nonsense_Mutation	SNP	G	G	A	rs121913388	bycluster	TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	A	21971120	G	A	21971120	4	1	626	1	0	0	0	0	0	1	0	0	3163	1125	39	1	240	1	CDKN2A	9	21971120	Nonsense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08		21971120	119242311	20	36883											
C11orf70	85016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	101937281	101937281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	G	101937281	C	G	101937281	3	3	626	1	0	0	0	0	1	0	0	0	1661	826	29	4	230	4	C11orf70	11	101937281	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08		101937281	33069235	21	36884											
GYS2	2998	broad.mit.edu	37	12	21728873	21728873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	T	21728873	C	T	21728873	3	4	626	1	0	0	0	0	1	0	0	0	6920	739	26	2	1745	2	GYS2	12	21728873	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08		21728873	112123022	22	36885											
FAR2	55711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	29485566	29485566	+	Silent	SNP	T	T	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	C	29485566	T	C	29485566	2	2	626	1	0	0	0	0	0	0	0	1	5682	1722	60	3		3	FAR2	12	29485566	Silent	SNP	T	TCGA-G7-6789-01A-11D-1961-08	7756693	29485566	104366329	23	36886											
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	72680574	72680574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	G	72680574	A	G	72680574	3	3	626	1	0	0	0	0	1	0	0	0	16491	449	16	3	899	3	TRHDE	12	72680574	Missense_Mutation	SNP	A	TCGA-G7-6789-01A-11D-1961-08	43195008	72680574	61171321	24	36887											
LRRIQ1	84125	bcgsc.ca	37	12	85441091	85441091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	T	85441091	G	T	85441091	3	4	626	1	0	0	0	0	1	0	0	0	9036	1357	47	4	539	4	LRRIQ1	12	85441091	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08	12760517	85441091	48410804	25	36888											
OR11G2	390439	broad.mit.edu	37	14	20666485	20666485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	G	20666485	A	G	20666485	3	3	626	1	0	0	0	0	1	0	0	0	10932	411	15	3	993	3	OR11G2	14	20666485	Missense_Mutation	SNP	A	TCGA-G7-6789-01A-11D-1961-08		20666485	86683055	26	36889											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78355391	78355391	+	Silent	SNP	C	C	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	G	78355391	C	G	78355391	2	3	626	1	0	0	0	0	0	0	0	1	13490	784	28	4		4	RNF213	17	78355391	Silent	SNP	C	TCGA-G7-6789-01A-11D-1961-08		78355391	2839819	27	36890											
RPRD1A	55197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	33606995	33606995	+	Silent	SNP	C	C	T	rs202026701		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	T	33606995	C	T	33606995	2	4	626	1	0	0	0	0	0	0	0	1	13628	523	19	1		1	RPRD1A	18	33606995	Silent	SNP	C	TCGA-G7-6789-01A-11D-1961-08		33606995	44470253	28	36891											
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	C	879943	G	C	879943	3	2	626	1	0	0	0	0	1	0	0	0	9441	1136	40	4	1322	4	MED16	19	879943	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08		879943	58249040	29	36892											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40408648	40408648	+	Silent	SNP	G	G	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	C	40408648	G	C	40408648	2	2	626	1	0	0	0	0	0	0	0	1	5785	1335	47	4		4	FCGBP	19	40408648	Silent	SNP	G	TCGA-G7-6789-01A-11D-1961-08	39528705	40408648	18720335	30	36893											
FAM65C	140876	bcgsc.ca	37	20	49219029	49219029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	A	49219029	C	A	49219029	3	1	626	1	0	0	0	0	1	0	0	0	5608	680	24	4	1653	4	FAM65C	20	49219029	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08		49219029	13806491	31	36894											
SLC6A14	11254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	115573956	115573956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	A	115573956	G	A	115573956	3	1	626	1	0	0	0	0	1	0	0	0	14690	1291	45	2	462	2	SLC6A14	23	115573956	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08		115573956	39696604	32	36895											
LOC440563	0	broad.mit.edu;bcgsc.ca	37	1	13183399	13183399	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	13183399	A	G	13183399	2	3	627	1	0	0	0	0	0	0	0	1	8886	156	6	3		3	LOC440563	1	13183399	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08		13183399	236067222	1	36896											
C1orf64	149563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16332451	16332451	+	Silent	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	16332451	G	C	16332451	2	2	627	1	0	0	0	0	0	0	0	1	2056	1103	39	4		4	C1orf64	1	16332451	Silent	SNP	G	TCGA-G7-6790-01A-11D-1961-08	3149052	16332451	232918170	2	36897											
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65330541	65330541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	65330541	A	T	65330541	3	4	627	1	0	0	0	0	1	0	0	0	7944	72	3	5	2431	5	JAK1	1	65330541	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	48998090	65330541	183920080	3	36898											
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110738291	110738291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	110738291	T	A	110738291	3	1	627	1	0	0	0	0	1	0	0	0	14693	1522	53	5	1610	5	SLC6A17	1	110738291	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	45407750	110738291	138512330	4	36899											
SIKE1	80143	hgsc.bcm.edu;bcgsc.ca	37	1	115323170	115323170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	115323170	C	A	115323170	3	1	627	1	0	0	0	0	1	0	0	0	14333	652	23	4	596	4	SIKE1	1	115323170	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	4584879	115323170	133927451	5	36900											
FCGR1A	2209	hgsc.bcm.edu	37	1	149755582	149755582	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	149755582	T	G	149755582	3	3	627	1	0	0	0	0	1	0	0	0	5786	1838	64	5	86	5	FCGR1A	1	149755582	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	34432412	149755582	99495039	6	36901											
TRIM46	80128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155148034	155148034	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	155148034	C	G	155148034	3	3	627	1	0	0	0	0	1	0	0	0	16533	913	32	4	242	4	TRIM46	1	155148034	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	5392452	155148034	94102587	7	36902											
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169510915	169510916	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	TT	169510916	-	TT	169510915	7	5	627	1	0	1	1	0	0	0	0	0	5350	217	8	0	3313	0	F5	1	169510915	Frame_Shift_Ins	INS	-	TCGA-G7-6790-01A-11D-1961-08	14362881	169510915	79739706	8	36903											
RC3H1	149041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	173916659	173916660	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	-	173916660	GT	-	173916659	7	5	627	1	0	1	0	1	0	0	0	0	13179	1261	44	0	840	0	RC3H1	1	173916659	Frame_Shift_Del	DEL	GT	TCGA-G7-6790-01A-11D-1961-08	4405744	173916659	75333962	9	36904											
GRHL1	29841	broad.mit.edu;bcgsc.ca	37	2	10130855	10130855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	10130855	G	A	10130855	3	1	627	1	0	0	0	0	1	0	0	0	6770	1058	37	1	1339	1	GRHL1	2	10130855	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08		10130855	233068518	10	36905											
GREB1	9687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	11706688	11706688	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	-	11706688	G	-	11706688	7	5	627	1	0	1	0	1	0	0	0	0	6767	1335	47	0	370	0	GREB1	2	11706688	Frame_Shift_Del	DEL	G	TCGA-G7-6790-01A-11D-1961-08	1575833	11706688	231492685	11	36906											
GREB1	9687	hgsc.bcm.edu;broad.mit.edu	37	2	11758729	11758729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	11758729	A	G	11758729	3	3	627	1	0	0	0	0	1	0	0	0	6767	188	7	3	3918	3	GREB1	2	11758729	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	52041	11758729	231440644	12	36907											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	15691634	15691634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	15691634	A	G	15691634	3	3	627	1	0	0	0	0	1	0	0	0	10193	101	4	3	6941	3	NBAS	2	15691634	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	3932905	15691634	227507739	13	36908											
LTBP1	4052	hgsc.bcm.edu	37	2	33172879	33172879	+	Missense_Mutation	SNP	T	T	C	rs62135680		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	33172879	T	C	33172879	3	2	627	1	0	0	0	0	1	0	0	0	9080	1580	55	3	490	3	LTBP1	2	33172879	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	17481245	33172879	210026494	14	36909											
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55812212	55812212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	55812212	A	G	55812212	3	3	627	1	0	0	0	0	1	0	0	0	14807	217	8	3	1385	3	SMEK2	2	55812212	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	22639333	55812212	187387161	15	36910											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171687570	171687570	+	Silent	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	171687570	C	T	171687570	2	4	627	1	0	0	0	0	0	0	0	1	6186	796	28	2		2	GAD1	2	171687570	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	115875358	171687570	71511803	16	36911											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179419674	179419674	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	179419674	A	G	179419674	2	3	627	1	0	0	0	0	0	0	0	1	16747	330	12	3		3	TTN	2	179419674	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	7732104	179419674	63779699	17	36912											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179650834	179650834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	179650834	G	C	179650834	3	2	627	1	0	0	0	0	1	0	0	0	16747	1377	48	4	109273	4	TTN	2	179650834	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	231160	179650834	63548539	18	36913											
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	185801068	185801068	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	185801068	A	G	185801068	2	3	627	1	0	0	0	0	0	0	0	1	18182	40	2	3		3	ZNF804A	2	185801068	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	6150234	185801068	57398305	19	36914											
RUFY4	285180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218938568	218938568	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	218938568	A	T	218938568	3	4	627	1	0	0	0	0	1	0	0	0	13754	188	7	5	582	5	RUFY4	2	218938568	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	33137500	218938568	24260805	20	36915											
COL6A3	1293	broad.mit.edu	37	2	238277277	238277277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	238277277	A	G	238277277	3	3	627	1	0	0	0	0	1	0	0	0	3703	217	8	3	4844	3	COL6A3	2	238277277	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	19338709	238277277	4922096	21	36916											
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127379599	127379599	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	127379599	T	A	127379599	4	1	627	1	0	0	0	0	0	1	0	0	12188	1821	63	5	738	5	PODXL2	3	127379599	Nonsense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08		127379599	70642831	22	36917											
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142123863	142123863	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	142123863	C	G	142123863	3	3	627	1	0	0	0	0	1	0	0	0	17471	681	24	4	3459	4	XRN1	3	142123863	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	14744264	142123863	55898567	23	36918											
CHRD	8646	hgsc.bcm.edu	37	3	184098193	184098193	+	Silent	SNP	A	A	C	rs1920128		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	184098193	A	C	184098193	2	2	627	1	0	0	0	0	0	0	0	1	3374	175	7	5		5	CHRD	3	184098193	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	41974330	184098193	13924237	24	36919											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48578146	48578147	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	CT	48578147	TG	CT	48578146	3	2	627	1	0	0	0	0	1	0	0	0	6071	1567	55	3	6583	3	FRYL	4	48578146	Missense_Mutation	DNP	TG	TCGA-G7-6790-01A-11D-1961-08		48578146	142576130	25	36920	474	2									
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48578148	48578148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	48578148	C	T	48578148	3	4	627	1	0	0	0	0	1	0	0	0	6071	710	25	2	6585	2	FRYL	4	48578148	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	2	48578148	142576128	26	36921	474	2									
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	77675996	77675996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	77675996	C	A	77675996	3	1	627	1	0	0	0	0	1	0	0	0	14308	680	24	4	4386	4	SHROOM3	4	77675996	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	29097848	77675996	113478280	27	36922											
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	103225511	103225511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	103225511	T	C	103225511	3	2	627	1	0	0	0	0	1	0	0	0	14637	1464	51	3	672	3	SLC39A8	4	103225511	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	25549515	103225511	87928765	28	36923											
ACSL1	2180	broad.mit.edu	37	4	185686012	185686012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	185686012	G	A	185686012	3	1	627	1	0	0	0	0	1	0	0	0	177	1261	44	2	697	2	ACSL1	4	185686012	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	82460501	185686012	5468264	29	36924											
IPO11	51194	ucsc.edu	37	5	61897615	61897615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	61897615	G	T	61897615	3	4	627	1	0	0	0	0	1	0	0	0	7800	991	35	4	2937	4	IPO11	5	61897615	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08		61897615	119017645	30	36925											
CTNNA1	1495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138266342	138266342	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	138266342	C	T	138266342	4	4	627	1	0	0	0	0	0	1	0	0	4014	666	23	1	2245	1	CTNNA1	5	138266342	Nonsense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	76368727	138266342	42648918	31	36926											
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156590094	156590094	+	Silent	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	156590094	T	A	156590094	2	1	627	1	0	0	0	0	0	0	0	1	5615	1567	55	5		5	FAM71B	5	156590094	Silent	SNP	T	TCGA-G7-6790-01A-11D-1961-08	18323752	156590094	24325166	32	36927											
BPHL	670	broad.mit.edu;bcgsc.ca	37	6	3123907	3123927	+	In_Frame_Del	DEL	GCCAAAGTGGCTGTGAATGGC	GCCAAAGTGGCTGTGAATGGC	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	GCCAAAGTGGCTGTGAATGGC	GCCAAAGTGGCTGTGAATGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	-	3123927	GCCAAAGTGGCTGTGAATGGC	-	3123907	7	5	627	1	0	1	0	1	0	0	0	0	1491	1319	46	0	130	0	BPHL	6	3123907	In_Frame_Del	DEL	GCCAAAGTGGCTGTGAATGGC	TCGA-G7-6790-01A-11D-1961-08		3123907	167991160	33	36928											
HIST1H3A	8350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26021008	26021008	+	Silent	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	26021008	C	T	26021008	2	4	627	1	0	0	0	0	0	0	0	1	7162	776	27	1		1	HIST1H3A	6	26021008	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	22897101	26021008	145094059	34	36929											
RPL10A	4736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	35437266	35437267	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	35437267	-	A	35437266	7	5	627	1	0	1	1	0	0	0	0	0	13568	1277	45	0	284	0	RPL10A	6	35437266	Frame_Shift_Ins	INS	-	TCGA-G7-6790-01A-11D-1961-08	9416258	35437266	135677801	35	36930											
FTSJD2	23070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37442389	37442389	+	Silent	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	37442389	A	G	37442389	2	3	627	1	0	0	0	0	0	0	0	1	6098	436	16	3		3	FTSJD2	6	37442389	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	2005123	37442389	133672678	36	36931											
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	45747951	45747951	+	Silent	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	45747951	T	C	45747951	2	2	627	1	0	0	0	0	0	0	0	1	292	1509	53	3		3	ADCY1	7	45747951	Silent	SNP	T	TCGA-G7-6790-01A-11D-1961-08		45747951	113390712	37	36932											
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104717426	104717426	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	104717426	T	G	104717426	3	3	627	1	0	0	0	0	1	0	0	0	9631	1493	52	5	815	5	MLL5	7	104717426	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	58969475	104717426	54421237	38	36933											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121237425	121237425	+	Silent	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	121237425	A	T	121237425	2	4	627	1	0	0	0	0	0	0	0	1	3673	175	7	5		5	COL14A1	8	121237425	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08		121237425	25126597	39	36934											
WDYHV1	55093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124448833	124448833	+	Missense_Mutation	SNP	G	G	T	rs201436036	alternate_allele	TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	124448833	G	T	124448833	3	4	627	1	0	0	0	0	1	0	0	0	17355	1020	36	4	389	4	WDYHV1	8	124448833	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	3211408	124448833	21915189	40	36935											
WASH1	100287171	hgsc.bcm.edu	37	9	17011	17011	+	Silent	SNP	T	T	C	rs3874689		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	17011	T	C	17011	2	2	627	1	0	0	0	0	0	0	0	1	17267	1567	55	3		3	WASH1	9	17011	Silent	SNP	T	TCGA-G7-6790-01A-11D-1961-08		17011	141196420	41	36936											
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	17332674	17332674	+	Silent	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	17332674	G	A	17332674	2	1	627	1	0	0	0	0	0	0	0	1	3641	962	34	2		2	CNTLN	9	17332674	Silent	SNP	G	TCGA-G7-6790-01A-11D-1961-08	17315663	17332674	123880757	42	36937											
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32448942	32448942	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	32448942	A	T	32448942	3	4	627	1	0	0	0	0	1	0	0	0	146	362	13	5	2493	5	ACO1	9	32448942	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	15116268	32448942	108764489	43	36938											
HNRNPK	3190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86585225	86585225	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	86585225	T	A	86585225	4	1	627	1	0	0	0	0	0	1	0	0	7276	1821	63	5	224	5	HNRNPK	9	86585225	Nonsense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	54136283	86585225	54628206	44	36939											
SPTLC1	10558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	94877626	94877626	+	Silent	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	94877626	A	T	94877626	2	4	627	1	0	0	0	0	0	0	0	1	15135	233	9	5		5	SPTLC1	9	94877626	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	8292401	94877626	46335805	45	36940											
ADAMTS13	11093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136305491	136305491	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	136305491	G	C	136305491	3	2	627	1	0	0	0	0	1	0	0	0	258	1145	40	4	1875	4	ADAMTS13	9	136305491	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	41427865	136305491	4907940	46	36941											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64968980	64968980	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	64968980	A	T	64968980	3	4	627	1	0	0	0	0	1	0	0	0	7957	130	5	5	4984	5	JMJD1C	10	64968980	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08		64968980	70565767	47	36942											
DBX1	120237	bcgsc.ca	37	11	20177947	20177947	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	-	20177947	G	-	20177947	7	5	627	1	0	1	0	1	0	0	0	0	4261	1116	39	0	190	0	DBX1	11	20177947	Frame_Shift_Del	DEL	G	TCGA-G7-6790-01A-11D-1961-08		20177947	114828569	48	36943											
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	40136275	40136275	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	40136275	A	C	40136275	3	2	627	1	0	0	0	0	1	0	0	0	9015	217	8	5	358	5	LRRC4C	11	40136275	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	19958328	40136275	94870241	49	36944											
ACCS	84680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	44105011	44105011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	44105011	T	C	44105011	3	2	627	1	0	0	0	0	1	0	0	0	133	1551	54	3	1342	3	ACCS	11	44105011	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	3968736	44105011	90901505	50	36945											
AHNAK	79026	broad.mit.edu	37	11	62288080	62288080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	62288080	T	G	62288080	3	3	627	1	0	0	0	0	1	0	0	0	414	1606	56	5	3983	5	AHNAK	11	62288080	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	18183069	62288080	72718436	51	36946											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49434235	49434235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	49434235	C	T	49434235	3	4	627	1	0	0	0	0	1	0	0	0	9628	536	19	1	9391	1	MLL2	12	49434235	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		49434235	84417660	52	36947											
RDH5	5959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56115126	56115126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	56115126	T	C	56115126	3	2	627	1	0	0	0	0	1	0	0	0	13208	1783	62	3	160	3	RDH5	12	56115126	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	6680891	56115126	77736769	53	36948											
AGAP2	116986	broad.mit.edu;bcgsc.ca	37	12	58120789	58120789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	58120789	C	T	58120789	3	4	627	1	0	0	0	0	1	0	0	0	368	768	27	1	282	1	AGAP2	12	58120789	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	2005663	58120789	75731106	54	36949											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121437343	121437343	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	121437343	C	T	121437343	4	4	627	1	0	0	0	0	0	1	0	0	7258	827	29	2	1715	2	HNF1A	12	121437343	Nonsense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	63316554	121437343	12414552	55	36950											
HMGB1	3146	broad.mit.edu	37	13	31035512	31035512	+	Missense_Mutation	SNP	T	T	A	rs79036453		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	31035512	T	A	31035512	3	1	627	1	0	0	0	0	1	0	0	0	7232	1606	56	5	21	5	HMGB1	13	31035512	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08		31035512	84134366	56	36951											
EPSTI1	94240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	43463356	43463357	+	Nonsense_Mutation	DNP	CT	CT	TA	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	TA	43463357	CT	TA	43463356	4	4	627	1	0	0	0	0	0	1	0	0	5200	681	24	2	269	2	EPSTI1	13	43463356	Nonsense_Mutation	DNP	CT	TCGA-G7-6790-01A-11D-1961-08	12427844	43463356	71706522	57	36952											
CCDC70	83446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52439743	52439743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	52439743	C	T	52439743	3	4	627	1	0	0	0	0	1	0	0	0	2845	594	21	2	231	2	CCDC70	13	52439743	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	8976387	52439743	62730135	58	36953											
PCDH8	5100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	53418949	53418949	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	53418949	A	T	53418949	3	4	627	1	0	0	0	0	1	0	0	0	11524	72	3	5	257	5	PCDH8	13	53418949	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	979206	53418949	61750929	59	36954											
KTN1	3895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	56107681	56107681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	56107681	C	T	56107681	4	4	627	1	0	0	0	0	0	1	0	0	8592	711	25	2	2072	2	KTN1	14	56107681	Nonsense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		56107681	51241859	60	36955											
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68631978	68631978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	68631978	C	G	68631978	3	3	627	1	0	0	0	0	1	0	0	0	7881	623	22	4	2510	4	ITGA11	15	68631978	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		68631978	33899414	61	36956											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	76673781	76673781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	76673781	C	T	76673781	3	4	627	1	0	0	0	0	1	0	0	0	13891	565	20	2	579	2	SCAPER	15	76673781	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	8041803	76673781	25857611	62	36957											
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	17252766	17252766	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	17252766	C	G	17252766	3	3	627	1	0	0	0	0	1	0	0	0	17475	869	30	4	1617	4	XYLT1	16	17252766	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		17252766	73101987	63	36958											
DCUN1D3	123879	broad.mit.edu	37	16	20871518	20871518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	20871518	C	A	20871518	3	1	627	1	0	0	0	0	1	0	0	0	4317	652	23	4	313	4	DCUN1D3	16	20871518	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	3618752	20871518	69483235	64	36959											
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10227379	10227379	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	10227379	A	T	10227379	4	4	627	1	0	0	0	0	0	1	0	0	10039	131	5	5	2998	5	MYH13	17	10227379	Nonsense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08		10227379	70967831	65	36960											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10309460	10309460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	10309460	T	C	10309460	3	2	627	1	0	0	0	0	1	0	0	0	10048	1783	62	3	3563	3	MYH8	17	10309460	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	82081	10309460	70885750	66	36961											
NLK	51701	broad.mit.edu;bcgsc.ca	37	17	26459690	26459690	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	-	26459690	T	-	26459690	7	5	627	1	0	1	0	1	0	0	0	0	10473	1500	52	0	643	0	NLK	17	26459690	Frame_Shift_Del	DEL	T	TCGA-G7-6790-01A-11D-1961-08	16150230	26459690	54735520	67	36962											
STAC2	342667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37368584	37368584	+	Silent	SNP	C	C	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	37368584	C	T	37368584	2	4	627	1	0	0	0	0	0	0	0	1	15252	796	28	2		2	STAC2	17	37368584	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	10908894	37368584	43826626	68	36963											
ITGB4	3691	hgsc.bcm.edu	37	17	73750000	73750000	+	Silent	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	73750000	C	G	73750000	2	3	627	1	0	0	0	0	0	0	0	1	7904	755	27	4		4	ITGB4	17	73750000	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	36381416	73750000	7445210	69	36964											
C19orf21	126353	broad.mit.edu	37	19	757398	757398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	757398	C	A	757398	3	1	627	1	0	0	0	0	1	0	0	0	1915	710	25	4	454	4	C19orf21	19	757398	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		757398	58371585	70	36965											
CAPS	828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5914495	5914495	+	Silent	SNP	G	G	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	5914495	G	T	5914495	2	4	627	1	0	0	0	0	0	0	0	1	2639	1335	47	4		4	CAPS	19	5914495	Silent	SNP	G	TCGA-G7-6790-01A-11D-1961-08	5157097	5914495	53214488	71	36966											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6709834	6709834	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	6709834	T	G	6709834	3	3	627	1	0	0	0	0	1	0	0	0	2206	1580	55	5	3397	5	C3	19	6709834	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	795339	6709834	52419149	72	36967											
FCER2	2208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7755293	7755293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	7755293	T	A	7755293	3	1	627	1	0	0	0	0	1	0	0	0	5783	1594	55	5	357	5	FCER2	19	7755293	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	1045459	7755293	51373690	73	36968											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11113781	11113781	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	11113781	G	C	11113781	3	2	627	1	0	0	0	0	1	0	0	0	14783	1203	42	4	1931	4	SMARCA4	19	11113781	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	3358488	11113781	48015202	74	36969											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38990577	38990577	+	Missense_Mutation	SNP	G	G	A	rs201584482		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	38990577	G	A	38990577	3	1	627	1	0	0	0	0	1	0	0	0	13781	1116	39	1	7422	1	RYR1	19	38990577	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	27876796	38990577	20138406	75	36970											
MYH14	79784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50764757	50764757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	50764757	A	G	50764757	3	3	627	1	0	0	0	0	1	0	0	0	10040	43	2	3	2528	3	MYH14	19	50764757	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	11774180	50764757	8364226	76	36971											
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56459545	56459545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	56459545	C	A	56459545	3	1	627	1	0	0	0	0	1	0	0	0	10490	623	22	4	279	4	NLRP8	19	56459545	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	5694788	56459545	2669438	77	36972											
ZBTB45	84878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59027831	59027831	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	59027831	C	G	59027831	3	3	627	1	0	0	0	0	1	0	0	0	17558	835	29	4	333	4	ZBTB45	19	59027831	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	2568286	59027831	101152	78	36973											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34092361	34092361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	34092361	A	G	34092361	3	3	627	1	0	0	0	0	1	0	0	0	3254	188	7	3	6270	3	CEP250	20	34092361	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08		34092361	28933159	79	36974											
EPB41L1	2036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34778270	34778270	+	Silent	SNP	C	C	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	34778270	C	A	34778270	2	1	627	1	0	0	0	0	0	0	0	1	5154	900	32	4		4	EPB41L1	20	34778270	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	685909	34778270	28247250	80	36975											
TMEM189-UBE2V1	387522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	48713266	48713266	+	Silent	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	48713266	T	C	48713266	2	2	627	1	0	0	0	0	0	0	0	1	16124	1606	56	3		3	TMEM189-UBE2V1	20	48713266	Silent	SNP	T	TCGA-G7-6790-01A-11D-1961-08	13934996	48713266	14312254	81	36976											
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49510230	49510230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	49510230	A	T	49510230	3	4	627	1	0	0	0	0	1	0	0	0	323	362	13	5	2291	5	ADNP	20	49510230	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	796964	49510230	13515290	82	36977											
ADARB1	104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46596347	46596347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	A	46596347	G	A	46596347	3	1	627	1	0	0	0	0	1	0	0	0	282	1087	38	1	737	1	ADARB1	21	46596347	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08		46596347	1533548	83	36978											
CRKL	1399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21272259	21272259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	21272259	G	C	21272259	3	2	627	1	0	0	0	0	1	0	0	0	3887	1087	38	4	39	4	CRKL	22	21272259	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08		21272259	30032307	84	36979											
APOL4	80832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36595420	36595420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	G	36595420	A	G	36595420	3	3	627	1	0	0	0	0	1	0	0	0	808	159	6	3	1018	3	APOL4	22	36595420	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	15323161	36595420	14709146	85	36980											
OFD1	8481	broad.mit.edu	37	X	13754640	13754640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	C	13754640	T	C	13754640	3	2	627	1	0	0	0	0	1	0	0	0	10845	1638	57	3	165	3	OFD1	23	13754640	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08		13754640	141515920	86	36981											
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152937464	152937464	+	Silent	SNP	A	A	T	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	T	152937464	A	T	152937464	2	4	627	1	0	0	0	0	0	0	0	1	12152	146	6	5		5	PNCK	23	152937464	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	139182824	152937464	2333096	87	36982											
ESPN	83715	hgsc.bcm.edu	37	1	6500833	6500833	+	Missense_Mutation	SNP	C	C	G	rs3817921		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	6500833	C	G	6500833	3	3	628	1	0	0	0	0	1	0	0	0	5256	623	22	4	837	4	ESPN	1	6500833	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		6500833	242749788	1	36983											
CELSR2	1952	hgsc.bcm.edu	37	1	109792762	109792762	+	Silent	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	C	109792762	T	C	109792762	2	2	628	1	0	0	0	0	0	0	0	1	3224	1722	60	3		3	CELSR2	1	109792762	Silent	SNP	T	TCGA-G7-6792-01A-21D-1961-08	103291929	109792762	139457859	2	36984											
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112303729	112303729	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	112303729	T	G	112303729	3	3	628	1	0	0	0	0	1	0	0	0	4350	1841	64	5	966	5	DDX20	1	112303729	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08	2510967	112303729	136946892	3	36985											
RXFP4	339403	broad.mit.edu;bcgsc.ca	37	1	155912175	155912175	+	Silent	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	155912175	G	A	155912175	2	1	628	1	0	0	0	0	0	0	0	1	13775	1306	46	2		2	RXFP4	1	155912175	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	43608446	155912175	93338446	4	36986											
DSTYK	25778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205132071	205132071	+	Silent	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	205132071	G	A	205132071	2	1	628	1	0	0	0	0	0	0	0	1	4787	962	34	2		2	DSTYK	1	205132071	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	49219896	205132071	44118550	5	36987											
LEFTY1	10637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	226075314	226075314	+	Silent	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	226075314	G	A	226075314	2	1	628	1	0	0	0	0	0	0	0	1	8722	958	34	2		2	LEFTY1	1	226075314	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	20943243	226075314	23175307	6	36988											
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230841791	230841791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	230841791	C	T	230841791	3	4	628	1	0	0	0	0	1	0	0	0	399	835	29	2	457	2	AGT	1	230841791	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	4766477	230841791	18408830	7	36989											
FOSL2	2355	ucsc.edu	37	2	28631654	28631654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	28631654	G	A	28631654	3	1	628	1	0	0	0	0	1	0	0	0	5995	1087	38	1	393	1	FOSL2	2	28631654	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08		28631654	214567719	8	36990											
NRXN1	9378	hgsc.bcm.edu	37	2	50574025	50574025	+	Silent	SNP	G	G	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	C	50574025	G	C	50574025	2	2	628	1	0	0	0	0	0	0	0	1	10672	1074	38	4		4	NRXN1	2	50574025	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	21942371	50574025	192625348	9	36991											
CXCR1	3577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219029397	219029397	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	C	219029397	G	C	219029397	3	2	628	1	0	0	0	0	1	0	0	0	4092	1174	41	4	518	4	CXCR1	2	219029397	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08	168455372	219029397	24169976	10	36992	475	2									
CXCR1	3577	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219029403	219029403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	219029403	A	T	219029403	3	4	628	1	0	0	0	0	1	0	0	0	4092	362	13	5	524	5	CXCR1	2	219029403	Missense_Mutation	SNP	A	TCGA-G7-6792-01A-21D-1961-08	6	219029403	24169970	11	36993	475	2									
CTDSPL	10217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38009318	38009318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	38009318	C	G	38009318	3	3	628	1	0	0	0	0	1	0	0	0	4007	695	24	4	389	4	CTDSPL	3	38009318	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		38009318	160013112	12	36994											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46008824	46008824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	46008824	C	T	46008824	3	4	628	1	0	0	0	0	1	0	0	0	6132	739	26	2	2478	2	FYCO1	3	46008824	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	7999506	46008824	152013606	13	36995											
IDUA	3425	hgsc.bcm.edu	37	4	980971	980971	+	Missense_Mutation	SNP	T	T	G	rs10794537		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	980971	T	G	980971	3	3	628	1	0	0	0	0	1	0	0	0	7511	1461	51	5	101	5	IDUA	4	980971	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08		980971	190173305	14	36996											
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159825696	159825696	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	159825696	A	G	159825696	2	3	628	1	0	0	0	0	0	0	0	1	5983	79	3	3		3	FNIP2	4	159825696	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08	158844725	159825696	31328580	15	36997											
SH3RF1	57630	hgsc.bcm.edu	37	4	170043337	170043337	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	170043337	A	G	170043337	2	3	628	1	0	0	0	0	0	0	0	1	14271	175	7	3		3	SH3RF1	4	170043337	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08	10217641	170043337	21110939	16	36998											
ZCCHC10	54819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132334373	132334373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	132334373	A	G	132334373	3	3	628	1	0	0	0	0	1	0	0	0	17591	304	11	3	101	3	ZCCHC10	5	132334373	Missense_Mutation	SNP	A	TCGA-G7-6792-01A-21D-1961-08		132334373	48580887	17	36999											
PCDHGB3	56102	hgsc.bcm.edu	37	5	140751166	140751166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	140751166	A	G	140751166	3	3	628	1	0	0	0	0	1	0	0	0	11571	391	14	3	1207	3	PCDHGB3	5	140751166	Missense_Mutation	SNP	A	TCGA-G7-6792-01A-21D-1961-08	8416793	140751166	40164094	18	37000											
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145610424	145610424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	145610424	C	A	145610424	3	1	628	1	0	0	0	0	1	0	0	0	13140	913	32	4	816	4	RBM27	5	145610424	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	4859258	145610424	35304836	19	37001											
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149677576	149677576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	149677576	G	A	149677576	3	1	628	1	0	0	0	0	1	0	0	0	994	1059	37	1	802	1	ARSI	5	149677576	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08	4067152	149677576	31237684	20	37002											
F12	2161	broad.mit.edu;bcgsc.ca	37	5	176830985	176830985	+	Silent	SNP	G	G	A	rs148322446	alternate_allele	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	176830985	G	A	176830985	2	1	628	1	0	0	0	0	0	0	0	1	5341	1074	38	1		1	F12	5	176830985	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	27153409	176830985	4084275	21	37003											
NDUFAF4	29078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	97344647	97344647	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	97344647	A	G	97344647	2	3	628	1	0	0	0	0	0	0	0	1	10284	98	4	3		3	NDUFAF4	6	97344647	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08		97344647	73770420	22	37004											
CALU	813	broad.mit.edu	37	7	128407599	128407599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	128407599	C	A	128407599	3	1	628	1	0	0	0	0	1	0	0	0	2596	652	23	4	949	4	CALU	7	128407599	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		128407599	30731064	23	37005											
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132709362	132709362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	132709362	T	A	132709362	3	1	628	1	0	0	0	0	1	0	0	0	3319	1548	54	5	512	5	CHCHD3	7	132709362	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08	4301763	132709362	26429301	24	37006											
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149416749	149416749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	149416749	C	T	149416749	3	4	628	1	0	0	0	0	1	0	0	0	8446	536	19	1	22	1	KRBA1	7	149416749	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	16707387	149416749	9721914	25	37007											
PABPC1	26986	hgsc.bcm.edu	37	8	101719226	101719226	+	Splice_Site	SNP	C	C	G	rs112580522	bycluster	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	101719226	C	G	101719226	5	3	628	1	0	0	0	0	0	0	1	0	11370	811	28	4	594	4	PABPC1	8	101719226	Splice_Site	SNP	C	TCGA-G7-6792-01A-21D-1961-08		101719226	44644796	26	37008											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133931710	133931710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	133931710	T	G	133931710	3	3	628	1	0	0	0	0	1	0	0	0	15825	1580	55	5	4550	5	TG	8	133931710	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08	32212484	133931710	12432312	27	37009											
SMARCA2	6595	hgsc.bcm.edu	37	9	2039761	2039761	+	Silent	SNP	A	A	G	rs13296982		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	2039761	A	G	2039761	2	3	628	1	0	0	0	0	0	0	0	1	14782	40	2	3		3	SMARCA2	9	2039761	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08		2039761	139173670	28	37010											
KIAA1279	26128	ucsc.edu	37	10	70775350	70775350	+	Silent	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	70775350	G	A	70775350	2	1	628	1	0	0	0	0	0	0	0	1	8228	1165	41	2		2	KIAA1279	10	70775350	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08		70775350	64759397	29	37011											
ERLIN1	10613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101911987	101911987	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	101911987	A	G	101911987	2	3	628	1	0	0	0	0	0	0	0	1	5234	108	4	3		3	ERLIN1	10	101911987	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08	31136637	101911987	33622760	30	37012											
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	7669667	7669667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	C	7669667	T	C	7669667	3	2	628	1	0	0	0	0	1	0	0	0	12321	1464	51	3	1762	3	PPFIBP2	11	7669667	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08		7669667	127336849	31	37013											
SLC22A20	440044	bcgsc.ca	37	11	64985059	64985059	+	Missense_Mutation	SNP	G	G	T	rs113875023	alternate_allele	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	64985059	G	T	64985059	3	4	628	1	0	0	0	0	1	0	0	0	14464	1232	43	4	549	4	SLC22A20	11	64985059	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08	57315392	64985059	70021457	32	37014											
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751585	+	Splice_Site	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	C	76751585	T	C	76751585	5	2	628	1	0	0	0	0	0	0	1	0	1261	1567	55	3	992	3	B3GNT6	11	76751585	Splice_Site	SNP	T	TCGA-G7-6792-01A-21D-1961-08	11766526	76751585	58254931	33	37015											
STK38L	23012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27468238	27468238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	27468238	C	A	27468238	3	1	628	1	0	0	0	0	1	0	0	0	15316	564	20	4	822	4	STK38L	12	27468238	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		27468238	106383657	34	37016											
KRT18	3875	broad.mit.edu	37	12	53344644	53344644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	53344644	A	G	53344644	3	3	628	1	0	0	0	0	1	0	0	0	8462	304	11	3	621	3	KRT18	12	53344644	Missense_Mutation	SNP	A	TCGA-G7-6792-01A-21D-1961-08	25876406	53344644	80507251	35	37017											
KRR1	11103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	75895546	75895546	+	Silent	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	C	75895546	T	C	75895546	2	2	628	1	0	0	0	0	0	0	0	1	8453	1451	51	3		3	KRR1	12	75895546	Silent	SNP	T	TCGA-G7-6792-01A-21D-1961-08	22550902	75895546	57956349	36	37018											
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	102159058	102159058	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	-	102159058	A	-	102159058	7	5	628	1	0	1	0	1	0	0	0	0	6552	159	6	0	2169	0	GNPTAB	12	102159058	Frame_Shift_Del	DEL	A	TCGA-G7-6792-01A-21D-1961-08	26263512	102159058	31692837	37	37019											
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109692084	109692084	+	Silent	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	109692084	C	T	109692084	2	4	628	1	0	0	0	0	0	0	0	1	107	842	30	2		2	ACACB	12	109692084	Silent	SNP	C	TCGA-G7-6792-01A-21D-1961-08	7533026	109692084	24159811	38	37020											
EXOC5	10640	ucsc.edu	37	14	57684753	57684753	+	Silent	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	57684753	C	T	57684753	2	4	628	1	0	0	0	0	0	0	0	1	5309	912	32	2		2	EXOC5	14	57684753	Silent	SNP	C	TCGA-G7-6792-01A-21D-1961-08		57684753	49664787	39	37021											
CDAN1	146059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43024004	43024004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	43024004	C	T	43024004	3	4	628	1	0	0	0	0	1	0	0	0	3056	507	18	2	2202	2	CDAN1	15	43024004	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		43024004	59507388	40	37022											
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63414861	63414861	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	-	63414861	G	-	63414861	7	5	628	1	0	1	0	1	0	0	0	0	8604	1335	47	0	390	0	LACTB	15	63414861	Frame_Shift_Del	DEL	G	TCGA-G7-6792-01A-21D-1961-08	20390857	63414861	39116531	41	37023											
PSTPIP1	9051	hgsc.bcm.edu	37	15	77328195	77328195	+	Silent	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	77328195	A	G	77328195	2	3	628	1	0	0	0	0	0	0	0	1	12731	175	7	3		3	PSTPIP1	15	77328195	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08	13913334	77328195	25203197	42	37024											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2138135	2138135	+	Missense_Mutation	SNP	G	G	A	rs201206500		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	2138135	G	A	2138135	3	1	628	1	0	0	0	0	1	0	0	0	16618	1087	38	1	5309	1	TSC2	16	2138135	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08		2138135	88216618	43	37025											
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	4731570	4731570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	4731570	C	A	4731570	3	1	628	1	0	0	0	0	1	0	0	0	9566	681	24	4	1204	4	MGRN1	16	4731570	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	2593435	4731570	85623183	44	37026											
PDXDC1	23042	ucsc.edu;bcgsc.ca	37	16	15130101	15130101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	15130101	C	A	15130101	4	1	628	1	0	0	0	0	0	1	0	0	11703	838	29	4	2426	4	PDXDC1	16	15130101	Nonsense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	10398531	15130101	75224652	45	37027											
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37817259	37817259	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	37817259	G	T	37817259	4	4	628	1	0	0	0	0	0	1	0	0	15269	1291	45	4	1119	4	STARD3	17	37817259	Nonsense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08		37817259	43377951	46	37028											
TMC8	147138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76133427	76133427	+	Silent	SNP	T	T	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	76133427	T	G	76133427	2	3	628	1	0	0	0	0	0	0	0	1	16003	1828	64	5		5	TMC8	17	76133427	Silent	SNP	T	TCGA-G7-6792-01A-21D-1961-08	38316168	76133427	5061783	47	37029											
APC2	10297	hgsc.bcm.edu	37	19	1469819	1469819	+	Silent	SNP	G	G	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	C	1469819	G	C	1469819	2	2	628	1	0	0	0	0	0	0	0	1	764	1074	38	4		4	APC2	19	1469819	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08		1469819	57659164	48	37030											
RAB3D	9545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11447891	11447891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	11447891	T	A	11447891	3	1	628	1	0	0	0	0	1	0	0	0	12947	1609	56	5	490	5	RAB3D	19	11447891	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08	9978072	11447891	47681092	49	37031											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3016489	3016489	+	Silent	SNP	G	G	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	3016489	G	T	3016489	2	4	628	1	0	0	0	0	0	0	0	1	12808	1335	47	4		4	PTPRA	20	3016489	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08		3016489	60009031	50	37032											
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23548869	23548869	+	Silent	SNP	G	G	T	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	T	23548869	G	T	23548869	2	4	628	1	0	0	0	0	0	0	0	1	3982	932	33	4		4	CST9L	20	23548869	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	20532380	23548869	39476651	51	37033											
PFKL	5211	broad.mit.edu	37	21	45741733	45741733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	A	45741733	G	A	45741733	3	1	628	1	0	0	0	0	1	0	0	0	11771	1203	42	2	1363	2	PFKL	21	45741733	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08		45741733	2388162	52	37034											
SGSM3	27352	hgsc.bcm.edu	37	22	40804935	40804935	+	Splice_Site	SNP	A	A	G	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	G	40804935	A	G	40804935	5	3	628	1	0	0	0	0	0	0	1	0	14237	202	7	3	1971	3	SGSM3	22	40804935	Splice_Site	SNP	A	TCGA-G7-6792-01A-21D-1961-08		40804935	10499631	53	37035											
USP11	8237	hgsc.bcm.edu	37	X	47102998	47102998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	C	47102998	T	C	47102998	3	2	628	1	0	0	0	0	1	0	0	0	17054	1551	54	3	1966	3	USP11	23	47102998	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08		47102998	108167562	54	37036											
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9782066	9782066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	9782066	G	T	9782066	3	4	629	1	0	0	0	0	1	0	0	0	11922	1290	45	4	2147	4	PIK3CD	1	9782066	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08		9782066	239468555	1	37037											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19186021	19186021	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	19186021	A	T	19186021	3	4	629	1	0	0	0	0	1	0	0	0	15575	217	8	5	2409	5	TAS1R2	1	19186021	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08	9403955	19186021	230064600	2	37038											
AHDC1	27245	ucsc.edu	37	1	27875553	27875553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	27875553	G	A	27875553	3	1	629	1	0	0	0	0	1	0	0	0	412	1261	44	2	1741	2	AHDC1	1	27875553	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	8689532	27875553	221375068	3	37039											
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90180336	90180336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	C	90180336	T	C	90180336	3	2	629	1	0	0	0	0	1	0	0	0	9030	1493	52	3	2213	3	LRRC8C	1	90180336	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08	62304783	90180336	159070285	4	37040											
FCRL3	115352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157667660	157667660	+	Silent	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	157667660	G	A	157667660	2	1	629	1	0	0	0	0	0	0	0	1	5803	1277	45	2		2	FCRL3	1	157667660	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	67487324	157667660	91582961	5	37041											
IER5	51278	hgsc.bcm.edu	37	1	181058618	181058618	+	Missense_Mutation	SNP	C	C	G	rs1416829		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	181058618	C	G	181058618	3	3	629	1	0	0	0	0	1	0	0	0	7515	652	23	4	582	4	IER5	1	181058618	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	23390958	181058618	68192003	6	37042											
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203455866	203455866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	203455866	C	A	203455866	3	1	629	1	0	0	0	0	1	0	0	0	12483	680	24	4	1012	4	PRELP	1	203455866	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	22397248	203455866	45794755	7	37043											
CKAP2L	150468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113513875	113513875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	113513875	C	T	113513875	3	4	629	1	0	0	0	0	1	0	0	0	3445	797	28	2	1188	2	CKAP2L	2	113513875	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08		113513875	129685498	8	37044											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179425266	179425266	+	Silent	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	179425266	A	G	179425266	2	3	629	1	0	0	0	0	0	0	0	1	16747	224	8	3		3	TTN	2	179425266	Silent	SNP	A	TCGA-G7-6793-01A-11D-1961-08	65911391	179425266	63774107	9	37045											
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182399601	182399601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	C	182399601	T	C	182399601	3	2	629	1	0	0	0	0	1	0	0	0	7885	1493	52	3	3048	3	ITGA4	2	182399601	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08	2974335	182399601	60799772	10	37046											
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204058575	204058575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	204058575	G	T	204058575	3	4	629	1	0	0	0	0	1	0	0	0	10195	942	33	4	7070	4	NBEAL1	2	204058575	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	21658974	204058575	39140798	11	37047											
SETD5	55209	hgsc.bcm.edu	37	3	9495547	9495547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	9495547	A	G	9495547	3	3	629	1	0	0	0	0	1	0	0	0	14147	101	4	3	2529	3	SETD5	3	9495547	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08		9495547	188526883	12	37048											
MTMR14	64419	ucsc.edu	37	3	9691415	9691415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	9691415	G	A	9691415	3	1	629	1	0	0	0	0	1	0	0	0	9949	1116	39	1	150	1	MTMR14	3	9691415	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	195868	9691415	188331015	13	37049											
TMCC1	23023	hgsc.bcm.edu	37	3	129390056	129390057	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	TT	129390057	AG	TT	129390056	3	4	629	1	0	0	0	0	1	0	0	0	16004	304	11	5	1345	5	TMCC1	3	129390056	Missense_Mutation	DNP	AG	TCGA-G7-6793-01A-11D-1961-08	119698641	129390056	68632374	14	37050											
TSC22D2	9819	ucsc.edu	37	3	150128649	150128649	+	Silent	SNP	C	C	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	150128649	C	T	150128649	2	4	629	1	0	0	0	0	0	0	0	1	16620	639	23	1		1	TSC22D2	3	150128649	Silent	SNP	C	TCGA-G7-6793-01A-11D-1961-08	20738593	150128649	47893781	15	37051											
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40103811	40103811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	40103811	A	G	40103811	3	3	629	1	0	0	0	0	1	0	0	0	10117	101	4	3	352	3	N4BP2	4	40103811	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08		40103811	151050465	16	37052											
CUTA	51596	hgsc.bcm.edu	37	6	33384696	33384696	+	Splice_Site	SNP	C	C	G	rs113648187	bycluster	TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	33384696	C	G	33384696	5	3	629	1	0	0	0	0	0	0	1	0	4064	521	18	4	133	4	CUTA	6	33384696	Splice_Site	SNP	C	TCGA-G7-6793-01A-11D-1961-08		33384696	137730371	17	37053											
MOXD1	26002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132649712	132649712	+	Missense_Mutation	SNP	C	C	G	rs146988576	byfrequency;alternate_allele	TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	132649712	C	G	132649712	3	3	629	1	0	0	0	0	1	0	0	0	9727	681	24	4	1188	4	MOXD1	6	132649712	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	99265016	132649712	38465355	18	37054											
KIAA0146	23514	broad.mit.edu;bcgsc.ca	37	8	48508505	48508506	+	In_Frame_Ins	INS	-	-	AGC	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	AGC	48508506	-	AGC	48508505	7	5	629	1	0	1	1	0	0	0	0	0	8164	243	9	0	1264	0	KIAA0146	8	48508505	In_Frame_Ins	INS	-	TCGA-G7-6793-01A-11D-1961-08		48508505	97855517	19	37055											
RIPK2	8767	ucsc.edu	37	8	90770295	90770295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	90770295	G	A	90770295	3	1	629	1	0	0	0	0	1	0	0	0	13394	1116	39	1	9	1	RIPK2	8	90770295	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	42261790	90770295	55593727	20	37056											
SMU1	55234	hgsc.bcm.edu	37	9	33068839	33068839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	33068839	T	A	33068839	3	1	629	1	0	0	0	0	1	0	0	0	14830	1464	51	5	1093	5	SMU1	9	33068839	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08		33068839	108144592	21	37057											
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15688933	15688933	+	Silent	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	15688933	G	A	15688933	2	1	629	1	0	0	0	0	0	0	0	1	7889	1252	44	2		2	ITGA8	10	15688933	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08		15688933	119845814	22	37058											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16916468	16916468	+	Silent	SNP	G	G	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	16916468	G	T	16916468	2	4	629	1	0	0	0	0	0	0	0	1	4053	1280	45	4		4	CUBN	10	16916468	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	1227535	16916468	118618279	23	37059											
UBTD1	80019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99327795	99327795	+	Silent	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	99327795	G	A	99327795	2	1	629	1	0	0	0	0	0	0	0	1	16919	991	35	2		2	UBTD1	10	99327795	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	82411327	99327795	36206952	24	37060											
SFRP5	6425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99527530	99527530	+	Missense_Mutation	SNP	G	G	T	rs199605298		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	99527530	G	T	99527530	3	4	629	1	0	0	0	0	1	0	0	0	14177	1116	39	4	262	4	SFRP5	10	99527530	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	199735	99527530	36007217	25	37061											
ATE1	11101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	123658376	123658376	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	-	123658376	C	-	123658376	7	5	629	1	0	1	0	1	0	0	0	0	1078	884	31	0	658	0	ATE1	10	123658376	Frame_Shift_Del	DEL	C	TCGA-G7-6793-01A-11D-1961-08	24130846	123658376	11876371	26	37062											
CNIH2	254263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66049735	66049735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	66049735	A	G	66049735	3	3	629	1	0	0	0	0	1	0	0	0	3605	410	15	3	93	3	CNIH2	11	66049735	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08		66049735	68956781	27	37063											
NPAS4	266743	broad.mit.edu	37	11	66191471	66191471	+	Silent	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	66191471	C	A	66191471	2	1	629	1	0	0	0	0	0	0	0	1	10572	581	21	4		4	NPAS4	11	66191471	Silent	SNP	C	TCGA-G7-6793-01A-11D-1961-08	141736	66191471	68815045	28	37064											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108380880	108380880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	108380880	C	T	108380880	4	4	629	1	0	0	0	0	0	1	0	0	5324	595	21	2	619	2	EXPH5	11	108380880	Nonsense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	42189409	108380880	26625636	29	37065											
KRT6A	3853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52882316	52882316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	52882316	G	A	52882316	3	1	629	1	0	0	0	0	1	0	0	0	8487	1203	42	2	486	2	KRT6A	12	52882316	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08		52882316	80969579	30	37066											
ERP29	10961	broad.mit.edu	37	12	112451270	112451270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	112451270	A	G	112451270	3	3	629	1	0	0	0	0	1	0	0	0	5244	449	16	3	3	3	ERP29	12	112451270	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08	59568954	112451270	21400625	31	37067											
KDM2B	84678	broad.mit.edu;bcgsc.ca	37	12	122016841	122016841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	C	122016841	T	C	122016841	3	2	629	1	0	0	0	0	1	0	0	0	8132	1667	58	3	4013	3	KDM2B	12	122016841	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08	9565571	122016841	11835054	32	37068											
OR4N4	283694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	22382930	22382930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	C	22382930	T	C	22382930	3	2	629	1	0	0	0	0	1	0	0	0	11085	1841	64	3	460	3	OR4N4	15	22382930	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08		22382930	80148462	33	37069											
FURIN	5045	ucsc.edu	37	15	91419099	91419099	+	Silent	SNP	G	G	A	rs141410539		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	91419099	G	A	91419099	2	1	629	1	0	0	0	0	0	0	0	1	6106	1103	39	1		1	FURIN	15	91419099	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	69036169	91419099	11112293	34	37070											
MRPS34	65993	hgsc.bcm.edu	37	16	1822947	1822947	+	Silent	SNP	C	C	G	rs1076695		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	1822947	C	G	1822947	2	3	629	1	0	0	0	0	0	0	0	1	9850	697	25	4		4	MRPS34	16	1822947	Silent	SNP	C	TCGA-G7-6793-01A-11D-1961-08		1822947	88531806	35	37071											
E4F1	1877	broad.mit.edu;ucsc.edu	37	16	2284711	2284711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	2284711	C	T	2284711	3	4	629	1	0	0	0	0	1	0	0	0	4876	652	23	1	1763	1	E4F1	16	2284711	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	461764	2284711	88070042	36	37072											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18856756	18856756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	C	18856756	T	C	18856756	3	2	629	1	0	0	0	0	1	0	0	0	14808	1763	61	3	4871	3	SMG1	16	18856756	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08	16572045	18856756	71497997	37	37073											
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20376785	20376785	+	Silent	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	20376785	G	A	20376785	2	1	629	1	0	0	0	0	0	0	0	1	11681	1136	40	1		1	PDILT	16	20376785	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	1520029	20376785	69977968	38	37074											
RNASEH2A	10535	ucsc.edu	37	19	12917561	12917561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	12917561	G	A	12917561	3	1	629	1	0	0	0	0	1	0	0	0	13425	1087	38	1	76	1	RNASEH2A	19	12917561	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08		12917561	46211422	39	37075											
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55685920	55685920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	55685920	C	T	55685920	3	4	629	1	0	0	0	0	1	0	0	0	15489	797	28	2	243	2	SYT5	19	55685920	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	42768359	55685920	3443063	40	37076											
ZNF549	256051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58049607	58049607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	58049607	C	G	58049607	3	3	629	1	0	0	0	0	1	0	0	0	17993	536	19	4	1206	4	ZNF549	19	58049607	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	2363687	58049607	1079376	41	37077											
ZIK1	284307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58101980	58101980	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	C	58101980	G	C	58101980	3	2	629	1	0	0	0	0	1	0	0	0	17695	1241	43	4	815	4	ZIK1	19	58101980	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	52373	58101980	1027003	42	37078											
USP25	29761	broad.mit.edu	37	21	17138432	17138432	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	17138432	C	G	17138432	4	3	629	1	0	0	0	0	0	1	0	0	17068	489	17	4	250	4	USP25	21	17138432	Nonsense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08		17138432	30991463	43	37079											
RBBP7	5931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	16864059	16864059	+	Silent	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	G	16864059	A	G	16864059	2	3	629	1	0	0	0	0	0	0	0	1	13117	359	13	3		3	RBBP7	23	16864059	Silent	SNP	A	TCGA-G7-6793-01A-11D-1961-08		16864059	138406501	44	37080											
ALAS2	212	broad.mit.edu	37	X	55051151	55051151	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	A	55051151	C	A	55051151	4	1	629	1	0	0	0	0	0	1	0	0	485	695	24	4	1495	4	ALAS2	23	55051151	Nonsense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	38187092	55051151	100219409	45	37081											
MED12	9968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70349198	70349198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	70349198	G	T	70349198	3	4	629	1	0	0	0	0	1	0	0	0	9435	1058	37	4	3712	4	MED12	23	70349198	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	15298047	70349198	84921362	46	37082											
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135825892	135825892	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	T	135825892	A	T	135825892	3	4	629	1	0	0	0	0	1	0	0	0	910	359	13	5	1889	5	ARHGEF6	23	135825892	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08	65476694	135825892	19444668	47	37083											
CC2D1B	200014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52819228	52819228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	C	52819228	G	C	52819228	3	2	630	1	0	0	0	0	1	0	0	0	2729	1029	36	4	40	4	CC2D1B	1	52819228	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08		52819228	196431393	1	37084											
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	98058809	98058809	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	98058809	T	A	98058809	4	1	630	1	0	0	0	0	0	1	0	0	4747	1850	64	5	2040	5	DPYD	1	98058809	Nonsense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	45239581	98058809	151191812	2	37085											
YY1AP1	55249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155630357	155630357	+	Silent	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	155630357	G	A	155630357	2	1	630	1	0	0	0	0	0	0	0	1	17520	1161	41	2		2	YY1AP1	1	155630357	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	57571548	155630357	93620264	3	37086											
RHBG	57127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156347130	156347130	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	C	156347130	G	C	156347130	3	2	630	1	0	0	0	0	1	0	0	0	13337	1348	47	4	232	4	RHBG	1	156347130	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	716773	156347130	92903491	4	37087											
TDRD5	163589	broad.mit.edu	37	1	179621298	179621298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	179621298	G	T	179621298	3	4	630	1	0	0	0	0	1	0	0	0	15745	1029	36	4	2172	4	TDRD5	1	179621298	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	23274168	179621298	69629323	5	37088											
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9645412	9645412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	9645412	T	G	9645412	3	3	630	1	0	0	0	0	1	0	0	0	238	1841	64	5	1079	5	ADAM17	2	9645412	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08		9645412	233553961	6	37089											
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	16082320	16082321	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	16082321	-	G	16082320	7	5	630	1	0	1	1	0	0	0	0	0	10028	652	23	0	136	0	MYCN	2	16082320	Frame_Shift_Ins	INS	-	TCGA-G7-6795-01A-11D-1961-08	6436908	16082320	227117053	7	37090											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21260848	21260848	+	Silent	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	21260848	G	A	21260848	2	1	630	1	0	0	0	0	0	0	0	1	785	1335	47	2		2	APOB	2	21260848	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	5178528	21260848	221938525	8	37091											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24051776	24051776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	24051776	C	A	24051776	3	1	630	1	0	0	0	0	1	0	0	0	1072	855	30	4	2670	4	ATAD2B	2	24051776	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	2790928	24051776	219147597	9	37092											
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	24509153	24509155	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	-	24509155	TTC	-	24509153	7	5	630	1	0	1	0	1	0	0	0	0	7934	1722	60	0	3453	0	ITSN2	2	24509153	In_Frame_Del	DEL	TTC	TCGA-G7-6795-01A-11D-1961-08	457377	24509153	218690220	10	37093											
AGBL5	60509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27291539	27291539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	27291539	A	G	27291539	3	3	630	1	0	0	0	0	1	0	0	0	378	304	11	3	2393	3	AGBL5	2	27291539	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	2782386	27291539	215907834	11	37094											
PAX8	7849	bcgsc.ca	37	2	113984805	113984805	+	Missense_Mutation	SNP	G	G	A	rs189229644		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	113984805	G	A	113984805	3	1	630	1	0	0	0	0	1	0	0	0	11492	1116	39	1	248	1	PAX8	2	113984805	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	86693266	113984805	129214568	12	37095											
PKP4	8502	bcgsc.ca	37	2	159490676	159490676	+	Silent	SNP	G	G	T	rs200605632	alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	159490676	G	T	159490676	2	4	630	1	0	0	0	0	0	0	0	1	11994	1103	39	4		4	PKP4	2	159490676	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	45505871	159490676	83708697	13	37096											
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170843280	170843281	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	170843281	-	T	170843280	7	5	630	1	0	1	1	0	0	0	0	0	16915	1029	36	0	3858	0	UBR3	2	170843280	Frame_Shift_Ins	INS	-	TCGA-G7-6795-01A-11D-1961-08	11352604	170843280	72356093	14	37097											
NDUFS1	4719	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	207006722	207006724	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	-	207006724	AGA	-	207006722	7	5	630	1	0	1	0	1	0	0	0	0	10298	188	7	0	1010	0	NDUFS1	2	207006722	In_Frame_Del	DEL	AGA	TCGA-G7-6795-01A-11D-1961-08	36163442	207006722	36192651	15	37098											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	218713795	218713795	+	Missense_Mutation	SNP	G	G	A	rs200862766		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	218713795	G	A	218713795	3	1	630	1	0	0	0	0	1	0	0	0	16355	1145	40	1	4205	1	TNS1	2	218713795	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	11707073	218713795	24485578	16	37099											
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234622277	234622277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	234622277	A	G	234622277	3	3	630	1	0	0	0	0	1	0	0	0	16960	217	8	3	642	3	UGT1A5	2	234622277	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	15908482	234622277	8577096	17	37100											
LRRFIP1	9208	broad.mit.edu	37	2	238672176	238672176	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	-	238672176	A	-	238672176	7	5	630	1	0	1	0	1	0	0	0	0	9034	246	9	0	2538	0	LRRFIP1	2	238672176	Frame_Shift_Del	DEL	A	TCGA-G7-6795-01A-11D-1961-08	4049899	238672176	4527197	18	37101											
SYNPR	132204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	63466530	63466530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	63466530	C	T	63466530	3	4	630	1	0	0	0	0	1	0	0	0	15471	710	25	2	145	2	SYNPR	3	63466530	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08		63466530	134555900	19	37102											
ROBO2	6092	broad.mit.edu;bcgsc.ca	37	3	77542437	77542437	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	77542437	T	G	77542437	3	3	630	1	0	0	0	0	1	0	0	0	13527	1580	55	5	730	5	ROBO2	3	77542437	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	14075907	77542437	120479993	20	37103											
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	133329894	133329895	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	CT	133329895	-	CT	133329894	7	5	630	1	0	1	1	0	0	0	0	0	16381	913	32	0	457	0	TOPBP1	3	133329894	Frame_Shift_Ins	INS	-	TCGA-G7-6795-01A-11D-1961-08	55787457	133329894	64692536	21	37104											
PLOD2	5352	broad.mit.edu	37	3	145806381	145806381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	145806381	G	A	145806381	3	1	630	1	0	0	0	0	1	0	0	0	12109	1290	45	2	1327	2	PLOD2	3	145806381	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	12476487	145806381	52216049	22	37105											
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	152553966	152553966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	152553966	A	G	152553966	3	3	630	1	0	0	0	0	1	0	0	0	11353	217	8	3	397	3	P2RY1	3	152553966	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	6747585	152553966	45468464	23	37106											
SH3TC1	54436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8230107	8230107	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	8230107	C	T	8230107	2	4	630	1	0	0	0	0	0	0	0	1	14274	680	24	2		2	SH3TC1	4	8230107	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08		8230107	182924169	24	37107											
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17586652	17586653	+	Missense_Mutation	DNP	AC	AC	GA	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	GA	17586653	AC	GA	17586652	3	3	630	1	0	0	0	0	1	0	0	0	8630	146	6	3	619	3	LAP3	4	17586652	Missense_Mutation	DNP	AC	TCGA-G7-6795-01A-11D-1961-08	9356545	17586652	173567624	25	37108											
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169317122	169317122	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	169317122	C	T	169317122	2	4	630	1	0	0	0	0	0	0	0	1	4381	854	30	2		2	DDX60L	4	169317122	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	151730470	169317122	21837154	26	37109											
WDR70	55100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37381726	37381726	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	37381726	C	T	37381726	2	4	630	1	0	0	0	0	0	0	0	1	17333	564	20	2		2	WDR70	5	37381726	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08		37381726	143533534	27	37110											
NDFIP1	80762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141524143	141524144	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	AG	141524144	CC	AG	141524143	3	1	630	1	0	0	0	0	1	0	0	0	10252	842	30	4	596	4	NDFIP1	5	141524143	Missense_Mutation	DNP	CC	TCGA-G7-6795-01A-11D-1961-08	104142417	141524143	39391117	28	37111											
TUBE1	51175	hgsc.bcm.edu	37	6	112408628	112408628	+	Missense_Mutation	SNP	A	A	C	rs199513778		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	C	112408628	A	C	112408628	3	2	630	1	0	0	0	0	1	0	0	0	16775	275	10	5	1465	5	TUBE1	6	112408628	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08		112408628	58706439	29	37112											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48506568	48506568	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	48506568	C	T	48506568	2	4	630	1	0	0	0	0	0	0	0	1	31	564	20	2		2	ABCA13	7	48506568	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08		48506568	110632095	30	37113											
ZNF680	340252	broad.mit.edu	37	7	63982808	63982808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	C	63982808	T	C	63982808	3	2	630	1	0	0	0	0	1	0	0	0	18099	1628	57	3	1272	3	ZNF680	7	63982808	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	15476240	63982808	95155855	31	37114											
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122765636	122765636	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	122765636	A	G	122765636	2	3	630	1	0	0	0	0	0	0	0	1	14404	407	15	3		3	SLC13A1	7	122765636	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	58782828	122765636	36373027	32	37115											
AKR1B15	441282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134260255	134260255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	134260255	G	T	134260255	3	4	630	1	0	0	0	0	1	0	0	0	468	1281	45	4	615	4	AKR1B15	7	134260255	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	11494619	134260255	24878408	33	37116											
MGAM	8972	broad.mit.edu	37	7	141794622	141794622	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	-	141794622	T	-	141794622	7	5	630	1	0	1	0	1	0	0	0	0	9548	1609	56	0	4883	0	MGAM	7	141794622	Frame_Shift_Del	DEL	T	TCGA-G7-6795-01A-11D-1961-08	7534367	141794622	17344041	34	37117											
TPD52	7163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	80963849	80963851	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	-	80963851	GAT	-	80963849	7	5	630	1	0	1	0	1	0	0	0	0	16409	942	33	0	344	0	TPD52	8	80963849	In_Frame_Del	DEL	GAT	TCGA-G7-6795-01A-11D-1961-08		80963849	65400173	35	37118											
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	107718929	107718929	+	Silent	SNP	T	T	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	C	107718929	T	C	107718929	2	2	630	1	0	0	0	0	0	0	0	1	11341	1606	56	3		3	OXR1	8	107718929	Silent	SNP	T	TCGA-G7-6795-01A-11D-1961-08	26755080	107718929	38645093	36	37119											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139737673	139737673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	139737673	C	T	139737673	3	4	630	1	0	0	0	0	1	0	0	0	3683	855	30	2	2898	2	COL22A1	8	139737673	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	32018744	139737673	6626349	37	37120											
ZNF658	26149	broad.mit.edu	37	9	40772391	40772392	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	-	40772392	CT	-	40772391	7	5	630	1	0	1	0	1	0	0	0	0	18081	681	24	0	299	0	ZNF658	9	40772391	Frame_Shift_Del	DEL	CT	TCGA-G7-6795-01A-11D-1961-08		40772391	100441040	38	37121											
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139371469	139371469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	139371469	G	A	139371469	3	1	630	1	0	0	0	0	1	0	0	0	13999	1319	46	2	6594	2	SEC16A	9	139371469	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	98599078	139371469	1841962	39	37122											
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111860443	111860443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	111860443	C	G	111860443	3	3	630	1	0	0	0	0	1	0	0	0	306	507	18	4	34	4	ADD3	10	111860443	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08		111860443	23674304	40	37123											
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10647666	10647666	+	Silent	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	10647666	C	G	10647666	2	3	630	1	0	0	0	0	0	0	0	1	9860	726	26	4		4	MRVI1	11	10647666	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08		10647666	124358850	41	37124											
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18309441	18309441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	18309441	G	A	18309441	3	1	630	1	0	0	0	0	1	0	0	0	7349	1130	39	1	857	1	HPS5	11	18309441	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	7661775	18309441	116697075	42	37125											
NPAT	4863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108032024	108032024	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	108032024	A	G	108032024	2	3	630	1	0	0	0	0	0	0	0	1	10573	156	6	3		3	NPAT	11	108032024	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	89722583	108032024	26974492	43	37126											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	133790126	133790126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	133790126	C	A	133790126	3	1	630	1	0	0	0	0	1	0	0	0	7613	739	26	4	563	4	IGSF9B	11	133790126	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	25758102	133790126	1216390	44	37127											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133794760	133794760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	133794760	C	T	133794760	3	4	630	1	0	0	0	0	1	0	0	0	7613	855	30	2	1995	2	IGSF9B	11	133794760	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	4634	133794760	1211756	45	37128											
TROAP	10024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49717751	49717751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	C	49717751	A	C	49717751	3	2	630	1	0	0	0	0	1	0	0	0	16587	246	9	5	274	5	TROAP	12	49717751	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08		49717751	84134144	46	37129											
RDH5	5959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56118170	56118170	+	Silent	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	56118170	A	T	56118170	2	4	630	1	0	0	0	0	0	0	0	1	13208	320	12	5		5	RDH5	12	56118170	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	6400419	56118170	77733725	47	37130											
NACA	4666	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	57114205	57114205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	57114205	G	A	57114205	3	1	630	1	0	0	0	0	1	0	0	0	10140	1029	36	2	5155	2	NACA	12	57114205	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	996035	57114205	76737690	48	37131											
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57918527	57918527	+	Silent	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	57918527	C	A	57918527	2	1	630	1	0	0	0	0	0	0	0	1	9355	668	24	4		4	MBD6	12	57918527	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	804322	57918527	75933368	49	37132											
WDR66	144406	broad.mit.edu	37	12	122398516	122398516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	122398516	A	G	122398516	3	3	630	1	0	0	0	0	1	0	0	0	17329	391	14	3	2209	3	WDR66	12	122398516	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	64479989	122398516	11453379	50	37133											
THBS1	7057	hgsc.bcm.edu	37	15	39880743	39880743	+	Silent	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	39880743	T	G	39880743	2	3	630	1	0	0	0	0	0	0	0	1	15865	1654	58	5		5	THBS1	15	39880743	Silent	SNP	T	TCGA-G7-6795-01A-11D-1961-08		39880743	62650649	51	37134											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43299382	43299382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	43299382	C	T	43299382	3	4	630	1	0	0	0	0	1	0	0	0	16913	922	32	2	2011	2	UBR1	15	43299382	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	3418639	43299382	59232010	52	37135											
SPG11	80208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44951365	44951365	+	Silent	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	44951365	A	T	44951365	2	4	630	1	0	0	0	0	0	0	0	1	15053	233	9	5		5	SPG11	15	44951365	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	1651983	44951365	57580027	53	37136											
PKD1	5310	hgsc.bcm.edu	37	16	2155892	2155892	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	2155892	A	G	2155892	2	3	630	1	0	0	0	0	0	0	0	1	11970	40	2	3		3	PKD1	16	2155892	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08		2155892	88198861	54	37137											
B3GNT9	84752	broad.mit.edu;bcgsc.ca	37	16	67184131	67184131	+	Silent	SNP	G	G	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	C	67184131	G	C	67184131	2	2	630	1	0	0	0	0	0	0	0	1	1264	958	34	4		4	B3GNT9	16	67184131	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	65028239	67184131	23170622	55	37138											
ZFHX3	463	hgsc.bcm.edu	37	16	72992635	72992635	+	Silent	SNP	T	T	C	rs140202779		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	C	72992635	T	C	72992635	2	2	630	1	0	0	0	0	0	0	0	1	17646	1606	56	3		3	ZFHX3	16	72992635	Silent	SNP	T	TCGA-G7-6795-01A-11D-1961-08	5808504	72992635	17362118	56	37139	476	3									
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72992638	72992638	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	72992638	C	T	72992638	2	4	630	1	0	0	0	0	0	0	0	1	17646	680	24	2		2	ZFHX3	16	72992638	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	3	72992638	17362115	57	37140	476	3									
ZFHX3	463	broad.mit.edu	37	16	72992645	72992647	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	-	72992647	TCT	-	72992645	7	5	630	1	0	1	0	1	0	0	0	0	17646	1551	54	0	9747	0	ZFHX3	16	72992645	In_Frame_Del	DEL	TCT	TCGA-G7-6795-01A-11D-1961-08	7	72992645	17362108	58	37141	476	3									
OR1E1	8387	broad.mit.edu	37	17	3301701	3301701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	C	3301701	T	C	3301701	3	2	630	1	0	0	0	0	1	0	0	0	10961	1435	50	3	944	3	OR1E1	17	3301701	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08		3301701	77893509	59	37142											
MYH10	4628	broad.mit.edu	37	17	8416922	8416922	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	8416922	C	T	8416922	2	4	630	1	0	0	0	0	0	0	0	1	10037	825	29	2		2	MYH10	17	8416922	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	5115221	8416922	72778288	60	37143											
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17030034	17030034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	17030034	G	A	17030034	3	1	630	1	0	0	0	0	1	0	0	0	9750	1232	43	2	300	2	MPRIP	17	17030034	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	8613112	17030034	64165176	61	37144											
PHF12	57649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27251080	27251080	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	27251080	T	A	27251080	3	1	630	1	0	0	0	0	1	0	0	0	11830	1464	51	5	2526	5	PHF12	17	27251080	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	10221046	27251080	53944130	62	37145											
KRT17	3872	broad.mit.edu	37	17	39777877	39777877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	39777877	G	T	39777877	3	4	630	1	0	0	0	0	1	0	0	0	8461	1116	39	4	516	4	KRT17	17	39777877	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	12526797	39777877	41417333	63	37146											
GJC1	10052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42882624	42882624	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	42882624	C	G	42882624	3	3	630	1	0	0	0	0	1	0	0	0	6421	835	29	4	632	4	GJC1	17	42882624	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	3104747	42882624	38312586	64	37147											
SAMD14	201191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48190273	48190273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	48190273	T	G	48190273	3	3	630	1	0	0	0	0	1	0	0	0	13832	1551	54	5	19	5	SAMD14	17	48190273	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	5307649	48190273	33004937	65	37148											
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48669448	48669448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	48669448	G	A	48669448	3	1	630	1	0	0	0	0	1	0	0	0	2546	1203	42	2	2955	2	CACNA1G	17	48669448	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	479175	48669448	32525762	66	37149											
VEZF1	7716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56060465	56060465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	56060465	G	T	56060465	3	4	630	1	0	0	0	0	1	0	0	0	17167	1261	44	4	1262	4	VEZF1	17	56060465	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	7391017	56060465	25134745	67	37150											
DYM	54808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46645145	46645145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	46645145	G	A	46645145	3	1	630	1	0	0	0	0	1	0	0	0	4842	1294	45	2	306	2	DYM	18	46645145	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08		46645145	31432103	68	37151											
TMPRSS9	360200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2408353	2408353	+	Splice_Site	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	2408353	G	A	2408353	5	1	630	1	0	0	0	0	0	0	1	0	16265	1014	35	2	766	2	TMPRSS9	19	2408353	Splice_Site	SNP	G	TCGA-G7-6795-01A-11D-1961-08		2408353	56720630	69	37152											
USHBP1	83878	hgsc.bcm.edu;bcgsc.ca	37	19	17370111	17370111	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	-	17370111	C	-	17370111	7	5	630	1	0	1	0	1	0	0	0	0	17049	739	26	0	1106	0	USHBP1	19	17370111	Frame_Shift_Del	DEL	C	TCGA-G7-6795-01A-11D-1961-08	14961758	17370111	41758872	70	37153											
SSBP4	170463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18538728	18538728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	18538728	G	A	18538728	3	1	630	1	0	0	0	0	1	0	0	0	15194	1319	46	2	229	2	SSBP4	19	18538728	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	1168617	18538728	40590255	71	37154											
SLC25A42	284439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19218750	19218750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	19218750	G	T	19218750	3	4	630	1	0	0	0	0	1	0	0	0	14520	1232	43	4	567	4	SLC25A42	19	19218750	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	680022	19218750	39910233	72	37155											
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	24310237	24310237	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	24310237	A	T	24310237	4	4	630	1	0	0	0	0	0	1	0	0	17810	412	15	5	1449	5	ZNF254	19	24310237	Nonsense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	5091487	24310237	34818746	73	37156											
SPINT2	10653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38774304	38774304	+	Silent	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	38774304	G	T	38774304	2	4	630	1	0	0	0	0	0	0	0	1	15081	1219	43	4		4	SPINT2	19	38774304	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	14464067	38774304	20354679	74	37157											
CYP2S1	29785	broad.mit.edu	37	19	41712375	41712375	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	41712375	C	T	41712375	2	4	630	1	0	0	0	0	0	0	0	1	4176	581	21	2		2	CYP2S1	19	41712375	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	2938071	41712375	17416608	75	37158											
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57037032	57037032	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	G	57037032	A	G	57037032	2	3	630	1	0	0	0	0	0	0	0	1	17942	40	2	3		3	ZNF471	19	57037032	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	15324657	57037032	2091951	76	37159											
RALGAPA2	57186	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	20491913	20491913	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	20491913	A	T	20491913	4	4	630	1	0	0	0	0	0	1	0	0	13027	131	5	5	736	5	RALGAPA2	20	20491913	Nonsense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08		20491913	42533607	77	37160											
SSTR4	6754	broad.mit.edu	37	20	23017198	23017198	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	T	23017198	A	T	23017198	3	4	630	1	0	0	0	0	1	0	0	0	15212	217	8	5	1080	5	SSTR4	20	23017198	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	2525285	23017198	40008322	78	37161											
BCR	613	ucsc.edu	37	22	23656859	23656859	+	Silent	SNP	T	T	A	rs55715766	byfrequency;alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	A	23656859	T	A	23656859	2	1	630	1	0	0	0	0	0	0	0	1	1388	1509	53	5		5	BCR	22	23656859	Silent	SNP	T	TCGA-G7-6795-01A-11D-1961-08		23656859	27647707	79	37162											
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6246873	6246873	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	6246873	A	T	6246873	4	4	631	1	0	0	0	0	0	1	0	0	13581	108	4	5	144	5	RPL22	1	6246873	Nonsense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		6246873	243003748	1	37163											
KIF1B	23095	broad.mit.edu	37	1	10352150	10352150	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	10352150	A	G	10352150	2	3	631	1	0	0	0	0	0	0	0	1	8291	291	11	3		3	KIF1B	1	10352150	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	4105277	10352150	238898471	2	37164											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27094329	27094329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	27094329	G	A	27094329	3	1	631	1	0	0	0	0	1	0	0	0	913	1291	45	2	3079	2	ARID1A	1	27094329	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	16742179	27094329	222156292	3	37165											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu	37	1	144856892	144856892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	144856892	T	C	144856892	3	2	631	1	0	0	0	0	1	0	0	0	11650	1609	56	3	467	3	PDE4DIP	1	144856892	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	117762563	144856892	104393729	4	37166											
SEC22B	9554	broad.mit.edu	37	1	145112418	145112418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	145112418	C	G	145112418	3	3	631	1	0	0	0	0	1	0	0	0	14002	797	28	4	406	4	SEC22B	1	145112418	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	255526	145112418	104138203	5	37167											
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154574720	154574720	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	154574720	A	T	154574720	3	4	631	1	0	0	0	0	1	0	0	0	281	188	7	5	3338	5	ADAR	1	154574720	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	9462302	154574720	94675901	6	37168											
FCRL4	83417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157559028	157559028	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	157559028	T	C	157559028	2	2	631	1	0	0	0	0	0	0	0	1	5804	1683	59	3		3	FCRL4	1	157559028	Silent	SNP	T	TCGA-G7-6796-01A-11D-1961-08	2984308	157559028	91691593	7	37169											
MPZL1	9019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167745333	167745333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	167745333	A	C	167745333	3	2	631	1	0	0	0	0	1	0	0	0	9756	72	3	5	656	5	MPZL1	1	167745333	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	10186305	167745333	81505288	8	37170											
CACYBP	27101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	174979129	174979129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	174979129	G	T	174979129	3	4	631	1	0	0	0	0	1	0	0	0	2566	942	33	4	623	4	CACYBP	1	174979129	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	7233796	174979129	74271492	9	37171											
RGS16	6004	ucsc.edu	37	1	182569597	182569597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	182569597	C	T	182569597	3	4	631	1	0	0	0	0	1	0	0	0	13311	710	25	2	173	2	RGS16	1	182569597	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	7590468	182569597	66681024	10	37172											
NAV1	89796	hgsc.bcm.edu	37	1	201762968	201762968	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	201762968	C	G	201762968	3	3	631	1	0	0	0	0	1	0	0	0	10190	652	23	4	3481	4	NAV1	1	201762968	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	19193371	201762968	47487653	11	37173											
TRAF5	7188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211545951	211545952	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	211545952	-	C	211545951	7	5	631	1	0	1	1	0	0	0	0	0	16456	1490	52	0	1619	0	TRAF5	1	211545951	Frame_Shift_Ins	INS	-	TCGA-G7-6796-01A-11D-1961-08	9782983	211545951	37704670	12	37174											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215865500	215865500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	215865500	T	G	215865500	3	3	631	1	0	0	0	0	1	0	0	0	30	1838	64	5	4807	5	ABCA12	2	215865500	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08		215865500	27333873	13	37175											
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219222364	219222364	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	219222364	C	T	219222364	4	4	631	1	0	0	0	0	0	1	0	0	2183	595	21	2	236	2	C2orf62	2	219222364	Nonsense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	3356864	219222364	23977009	14	37176											
ZNF142	7701	hgsc.bcm.edu;bcgsc.ca	37	2	219509115	219509115	+	Silent	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	219509115	A	T	219509115	2	4	631	1	0	0	0	0	0	0	0	1	17743	175	7	5		5	ZNF142	2	219509115	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	286751	219509115	23690258	15	37177											
SP100	6672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	231338157	231338157	+	Splice_Site	DEL	T	T	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	-	231338157	T	-	231338157	8	5	631	1	0	1	0	1	0	0	1	0	14973	1652	57	0	1610	0	SP100	2	231338157	Splice_Site	DEL	T	TCGA-G7-6796-01A-11D-1961-08	11829042	231338157	11861216	16	37178											
SLC25A38	54977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	39431018	39431018	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	39431018	C	T	39431018	2	4	631	1	0	0	0	0	0	0	0	1	14515	784	28	2		2	SLC25A38	3	39431018	Silent	SNP	C	TCGA-G7-6796-01A-11D-1961-08		39431018	158591412	17	37179											
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172232704	172232704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	172232704	T	C	172232704	3	2	631	1	0	0	0	0	1	0	0	0	16313	1406	49	3	644	3	TNFSF10	3	172232704	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	132801686	172232704	25789726	18	37180											
ACOX3	8310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	8372681	8372681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	8372681	G	A	8372681	3	1	631	1	0	0	0	0	1	0	0	0	160	1000	35	2	173	2	ACOX3	4	8372681	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08		8372681	182781595	19	37181											
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68385012	68385012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	68385012	C	G	68385012	3	3	631	1	0	0	0	0	1	0	0	0	3231	912	32	4	2347	4	CENPC1	4	68385012	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	60012331	68385012	122769264	20	37182											
RNF150	57484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	141832440	141832440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	141832440	G	C	141832440	3	2	631	1	0	0	0	0	1	0	0	0	13464	1252	44	4	268	4	RNF150	4	141832440	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	73447428	141832440	49321836	21	37183											
DNAH5	1767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13928214	13928214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	13928214	T	A	13928214	3	1	631	1	0	0	0	0	1	0	0	0	4606	1783	62	5	13916	5	DNAH5	5	13928214	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08		13928214	166987046	22	37184											
PCDHGA8	9708	broad.mit.edu	37	5	140772927	140772927	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	140772927	C	T	140772927	4	4	631	1	0	0	0	0	0	1	0	0	11567	711	25	2	549	2	PCDHGA8	5	140772927	Nonsense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	126844713	140772927	40142333	23	37185											
LRRC16A	55604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25600730	25600730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	25600730	C	A	25600730	3	1	631	1	0	0	0	0	1	0	0	0	8978	681	24	4	3438	4	LRRC16A	6	25600730	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		25600730	145514337	24	37186											
HLA-F	3134	ucsc.edu	37	6	29692860	29692860	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	29692860	C	T	29692860	2	4	631	1	0	0	0	0	0	0	0	1	7218	610	22	2		2	HLA-F	6	29692860	Silent	SNP	C	TCGA-G7-6796-01A-11D-1961-08	4092130	29692860	141422207	25	37187	477	2									
HLA-F	3134	ucsc.edu	37	6	29692866	29692866	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	29692866	G	A	29692866	2	1	631	1	0	0	0	0	0	0	0	1	7218	1252	44	2		2	HLA-F	6	29692866	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	6	29692866	141422201	26	37188	477	2									
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	6	38843585	38843585	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	-	38843585	G	-	38843585	7	5	631	1	0	1	0	1	0	0	0	0	4609	1020	36	0	7382	0	DNAH8	6	38843585	Frame_Shift_Del	DEL	G	TCGA-G7-6796-01A-11D-1961-08	9150719	38843585	132271482	27	37189											
KLC4	89953	broad.mit.edu;ucsc.edu	37	6	43042368	43042368	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	43042368	G	T	43042368	2	4	631	1	0	0	0	0	0	0	0	1	8343	1219	43	4		4	KLC4	6	43042368	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	4198783	43042368	128072699	28	37190											
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70462182	70462182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	70462182	T	C	70462182	3	2	631	1	0	0	0	0	1	0	0	0	8849	1783	62	3	1300	3	LMBRD1	6	70462182	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	27419814	70462182	100652885	29	37191											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152673335	152673335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	152673335	T	C	152673335	3	2	631	1	0	0	0	0	1	0	0	0	15457	1696	59	3	15367	3	SYNE1	6	152673335	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	82211153	152673335	18441732	30	37192											
DOCK4	9732	hgsc.bcm.edu	37	7	111387432	111387432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	111387432	A	G	111387432	3	3	631	1	0	0	0	0	1	0	0	0	4691	188	7	3	1487	3	DOCK4	7	111387432	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		111387432	47751231	31	37193											
ING3	54556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	120595620	120595620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	120595620	A	G	120595620	3	3	631	1	0	0	0	0	1	0	0	0	7744	449	16	3	223	3	ING3	7	120595620	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	9208188	120595620	38543043	32	37194											
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6302006	6302006	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	6302006	A	T	6302006	3	4	631	1	0	0	0	0	1	0	0	0	9405	217	8	5	793	5	MCPH1	8	6302006	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		6302006	140062016	33	37195											
IKBKB	3551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42173753	42173753	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	42173753	T	A	42173753	3	1	631	1	0	0	0	0	1	0	0	0	7618	1696	59	5	860	5	IKBKB	8	42173753	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	35871747	42173753	104190269	34	37196											
FBXL6	26233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145579793	145579793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	145579793	T	C	145579793	3	2	631	1	0	0	0	0	1	0	0	0	5730	1580	55	3	320	3	FBXL6	8	145579793	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	103406040	145579793	784229	35	37197											
SVEP1	79987	broad.mit.edu	37	9	113198779	113198779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	113198779	C	T	113198779	3	4	631	1	0	0	0	0	1	0	0	0	15432	594	21	2	6154	2	SVEP1	9	113198779	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		113198779	28014652	36	37198											
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7825098	7825098	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	7825098	C	G	7825098	3	3	631	1	0	0	0	0	1	0	0	0	8322	913	32	4	1074	4	KIN	10	7825098	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		7825098	127709649	37	37199											
PLCE1	51196	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	95849076	95849076	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	95849076	A	G	95849076	2	3	631	1	0	0	0	0	0	0	0	1	12041	378	14	3		3	PLCE1	10	95849076	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	88023978	95849076	39685671	38	37200											
BEST1	7439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61730354	61730354	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	61730354	C	T	61730354	2	4	631	1	0	0	0	0	0	0	0	1	1404	668	24	2		2	BEST1	11	61730354	Silent	SNP	C	TCGA-G7-6796-01A-11D-1961-08		61730354	73276162	39	37201											
MAML2	84441	hgsc.bcm.edu	37	11	95825431	95825431	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	95825431	T	C	95825431	2	2	631	1	0	0	0	0	0	0	0	1	9213	1722	60	3		3	MAML2	11	95825431	Silent	SNP	T	TCGA-G7-6796-01A-11D-1961-08	34095077	95825431	39181085	40	37202											
C12orf57	113246	broad.mit.edu;ucsc.edu	37	12	7055012	7055012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	7055012	A	G	7055012	3	3	631	1	0	0	0	0	1	0	0	0	1703	72	3	3	318	3	C12orf57	12	7055012	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		7055012	126796883	41	37203											
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	21962862	21962862	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	21962862	G	A	21962862	2	1	631	1	0	0	0	0	0	0	0	1	59	1311	46	2		2	ABCC9	12	21962862	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	14907850	21962862	111889033	42	37204											
CAPRIN2	65981	hgsc.bcm.edu;bcgsc.ca	37	12	30886574	30886574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	30886574	A	G	30886574	3	3	631	1	0	0	0	0	1	0	0	0	2638	391	14	3	2558	3	CAPRIN2	12	30886574	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	8923712	30886574	102965321	43	37205											
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52761009	52761009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	52761009	A	G	52761009	3	3	631	1	0	0	0	0	1	0	0	0	8506	304	11	3	1378	3	KRT85	12	52761009	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	21874435	52761009	81090886	44	37206											
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102127436	102127436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	102127436	C	G	102127436	3	3	631	1	0	0	0	0	1	0	0	0	15446	922	32	4	356	4	SYCP3	12	102127436	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	49366427	102127436	31724459	45	37207											
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	31233386	31233386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	31233386	A	C	31233386	3	2	631	1	0	0	0	0	1	0	0	0	17104	247	9	5	3202	5	USPL1	13	31233386	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		31233386	83936492	46	37208											
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48833064	48833064	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	48833064	A	G	48833064	2	3	631	1	0	0	0	0	0	0	0	1	7920	40	2	3		3	ITM2B	13	48833064	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	17599678	48833064	66336814	47	37209											
RYR3	6263	ucsc.edu	37	15	34152846	34152846	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	34152846	C	T	34152846	4	4	631	1	0	0	0	0	0	1	0	0	13783	528	19	1	14752	1	RYR3	15	34152846	Nonsense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		34152846	68378546	48	37210											
ZP2	7783	hgsc.bcm.edu	37	16	21213523	21213523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	21213523	T	C	21213523	3	2	631	1	0	0	0	0	1	0	0	0	18228	1550	54	3	1084	3	ZP2	16	21213523	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08		21213523	69141230	49	37211											
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67910484	67910484	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	67910484	G	A	67910484	2	1	631	1	0	0	0	0	0	0	0	1	4910	991	35	2		2	EDC4	16	67910484	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	46696961	67910484	22444269	50	37212											
TEKT1	83659	broad.mit.edu;bcgsc.ca	37	17	6718552	6718553	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	6718553	-	A	6718552	7	5	631	1	0	1	1	0	0	0	0	0	15764	1406	49	0	713	0	TEKT1	17	6718552	Frame_Shift_Ins	INS	-	TCGA-G7-6796-01A-11D-1961-08		6718552	74476658	51	37213											
ALKBH5	54890	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18111630	18111630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	18111630	C	T	18111630	3	4	631	1	0	0	0	0	1	0	0	0	530	768	27	1	1119	1	ALKBH5	17	18111630	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	11393078	18111630	63083580	52	37214											
ADAP2	55803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29261209	29261209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	29261209	G	A	29261209	3	1	631	1	0	0	0	0	1	0	0	0	280	1058	37	1	422	1	ADAP2	17	29261209	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	11149579	29261209	51934001	53	37215											
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41244817	41244817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	41244817	C	T	41244817	3	4	631	1	0	0	0	0	1	0	0	0	1500	690	24	2	2986	2	BRCA1	17	41244817	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	11983608	41244817	39950393	54	37216											
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu	37	17	45668145	45668145	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	45668145	A	G	45668145	2	3	631	1	0	0	0	0	0	0	0	1	10582	407	15	3		3	NPEPPS	17	45668145	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	4423328	45668145	35527065	55	37217											
MSI2	124540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	55754379	55754379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	55754379	G	A	55754379	3	1	631	1	0	0	0	0	1	0	0	0	9883	1174	41	2	1122	2	MSI2	17	55754379	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	10086234	55754379	25440831	56	37218											
NACA2	342538	ucsc.edu	37	17	59668146	59668146	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	59668146	A	G	59668146	2	3	631	1	0	0	0	0	0	0	0	1	10141	291	11	3		3	NACA2	17	59668146	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	3913767	59668146	21527064	57	37219											
EXOC7	23265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74081426	74081426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	74081426	T	A	74081426	3	1	631	1	0	0	0	0	1	0	0	0	5312	1464	51	5	393	5	EXOC7	17	74081426	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	14413280	74081426	7113784	58	37220											
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10487626	10487626	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	10487626	C	G	10487626	3	3	631	1	0	0	0	0	1	0	0	0	765	739	26	4	1154	4	APCDD1	18	10487626	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		10487626	67589622	59	37221											
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6833546	6833546	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	6833546	T	G	6833546	3	3	631	1	0	0	0	0	1	0	0	0	17143	1609	56	5	1684	5	VAV1	19	6833546	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08		6833546	52295437	60	37222											
RBM42	79171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36128157	36128157	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	36128157	G	A	36128157	2	1	631	1	0	0	0	0	0	0	0	1	13149	991	35	2		2	RBM42	19	36128157	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	29294611	36128157	23000826	61	37223											
HNRNPUL1	11100	bcgsc.ca	37	19	41807610	41807610	+	Splice_Site	SNP	G	G	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	41807610	G	C	41807610	5	2	631	1	0	0	0	0	0	0	1	0	7281	1275	44	4	1730	4	HNRNPUL1	19	41807610	Splice_Site	SNP	G	TCGA-G7-6796-01A-11D-1961-08	5679453	41807610	17321373	62	37224											
IRGC	56269	hgsc.bcm.edu	37	19	44223048	44223048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	G	44223048	C	G	44223048	3	3	631	1	0	0	0	0	1	0	0	0	7845	594	21	4	340	4	IRGC	19	44223048	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	2415438	44223048	14905935	63	37225											
ERCC1	2067	hgsc.bcm.edu	37	19	45926544	45926544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	45926544	T	C	45926544	3	2	631	1	0	0	0	0	1	0	0	0	5214	1551	54	3	969	3	ERCC1	19	45926544	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	1703496	45926544	13202439	64	37226											
PPP2R1A	5518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52724382	52724382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	52724382	T	C	52724382	3	2	631	1	0	0	0	0	1	0	0	0	12392	1435	50	3	1560	3	PPP2R1A	19	52724382	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	6797838	52724382	6404601	65	37227											
ZNF132	7691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58945194	58945194	+	Silent	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	A	58945194	T	A	58945194	2	1	631	1	0	0	0	0	0	0	0	1	17734	1538	54	5		5	ZNF132	19	58945194	Silent	SNP	T	TCGA-G7-6796-01A-11D-1961-08	6220812	58945194	183789	66	37228											
SEC23B	10483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	18496315	18496315	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	T	18496315	A	T	18496315	3	4	631	1	0	0	0	0	1	0	0	0	14005	217	8	5	311	5	SEC23B	20	18496315	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		18496315	44529205	67	37229											
RPL3	6122	ucsc.edu	37	22	39711372	39711372	+	Splice_Site	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	C	39711372	A	C	39711372	5	2	631	1	0	0	0	0	0	0	1	0	13592	173	6	5	545	5	RPL3	22	39711372	Splice_Site	SNP	A	TCGA-G7-6796-01A-11D-1961-08		39711372	11593194	68	37230											
FAM132A	388581	ucsc.edu	37	1	1179654	1179654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	1179654	C	A	1179654	3	1	632	1	0	0	0	0	1	0	0	0	5446	666	23	4	636	4	FAM132A	1	1179654	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		1179654	248070967	1	37231											
XKR8	55113	ucsc.edu	37	1	28290011	28290011	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	28290011	C	T	28290011	2	4	632	1	0	0	0	0	0	0	0	1	17449	776	27	1		1	XKR8	1	28290011	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	27110357	28290011	220960610	2	37232											
ZSCAN20	7579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33960785	33960785	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	33960785	C	T	33960785	2	4	632	1	0	0	0	0	0	0	0	1	18244	816	29	2		2	ZSCAN20	1	33960785	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	5670774	33960785	215289836	3	37233											
FAM71A	149647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	212799448	212799448	+	Missense_Mutation	SNP	G	G	T	rs149566937	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	212799448	G	T	212799448	3	4	632	1	0	0	0	0	1	0	0	0	5614	1000	35	4	1231	4	FAM71A	1	212799448	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	178838663	212799448	36451173	4	37234											
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229770859	229770859	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	229770859	G	C	229770859	3	2	632	1	0	0	0	0	1	0	0	0	17037	971	34	4	509	4	URB2	1	229770859	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	16971411	229770859	19479762	5	37235	478	2									
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229770863	229770863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	229770863	A	G	229770863	3	3	632	1	0	0	0	0	1	0	0	0	17037	188	7	3	513	3	URB2	1	229770863	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	4	229770863	19479758	6	37236	478	2									
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17955658	17955658	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	17955658	C	T	17955658	4	4	632	1	0	0	0	0	0	1	0	0	6342	479	17	2	1230	2	GEN1	2	17955658	Nonsense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		17955658	225243715	7	37237											
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26532908	26532908	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	26532908	C	A	26532908	2	1	632	1	0	0	0	0	0	0	0	1	6637	813	29	4		4	GPR113	2	26532908	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	8577250	26532908	216666465	8	37238											
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	54147352	54147352	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	-	54147352	C	-	54147352	7	5	632	1	0	1	0	1	0	0	0	0	12719	855	30	0	3245	0	PSME4	2	54147352	Frame_Shift_Del	DEL	C	TCGA-G7-6797-01A-11D-1961-08	27614444	54147352	189052021	9	37239											
GFPT1	2673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69553334	69553334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	69553334	A	T	69553334	3	4	632	1	0	0	0	0	1	0	0	0	6352	159	6	5	16	5	GFPT1	2	69553334	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	15405982	69553334	173646039	10	37240											
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133541732	133541732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	133541732	C	G	133541732	3	3	632	1	0	0	0	0	1	0	0	0	10230	624	22	4	3105	4	NCKAP5	2	133541732	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	63988398	133541732	109657641	11	37241											
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160084382	160084382	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	160084382	T	G	160084382	3	3	632	1	0	0	0	0	1	0	0	0	15556	1841	64	5	4046	5	TANC1	2	160084382	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	26542650	160084382	83114991	12	37242											
ITM2C	81618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231741583	231741583	+	Silent	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	231741583	G	C	231741583	2	2	632	1	0	0	0	0	0	0	0	1	7921	1132	40	4		4	ITM2C	2	231741583	Silent	SNP	G	TCGA-G7-6797-01A-11D-1961-08	71657201	231741583	11457790	13	37243											
CCR2	729230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46399085	46399085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	46399085	T	A	46399085	3	1	632	1	0	0	0	0	1	0	0	0	2943	1609	56	5	69	5	CCR2	3	46399085	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08		46399085	151623345	14	37244											
SLC26A6	65010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48668741	48668741	+	Splice_Site	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	48668741	T	C	48668741	5	2	632	1	0	0	0	0	0	0	1	0	14534	1594	55	3	1469	3	SLC26A6	3	48668741	Splice_Site	SNP	T	TCGA-G7-6797-01A-11D-1961-08	2269656	48668741	149353689	15	37245											
GPX1	2876	ucsc.edu	37	3	49394910	49394910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	49394910	G	A	49394910	3	1	632	1	0	0	0	0	1	0	0	0	6746	1203	42	2	92	2	GPX1	3	49394910	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	726169	49394910	148627520	16	37246											
ZMYND10	51364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50379017	50379017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	50379017	C	T	50379017	4	4	632	1	0	0	0	0	0	1	0	0	17717	595	21	2	95	2	ZMYND10	3	50379017	Nonsense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	984107	50379017	147643413	17	37247											
ACOX2	8309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58517532	58517532	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	58517532	C	A	58517532	2	1	632	1	0	0	0	0	0	0	0	1	159	494	18	4		4	ACOX2	3	58517532	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	8138515	58517532	139504898	18	37248											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101370105	101370105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	101370105	C	T	101370105	3	4	632	1	0	0	0	0	1	0	0	0	17536	478	17	2	98	2	ZBTB11	3	101370105	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	42852573	101370105	96652325	19	37249											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113376409	113376409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	113376409	T	C	113376409	3	2	632	1	0	0	0	0	1	0	0	0	8275	1435	50	3	2621	3	KIAA2018	3	113376409	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	12006304	113376409	84646021	20	37250											
FSTL1	11167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	120122159	120122159	+	Silent	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	120122159	A	G	120122159	2	3	632	1	0	0	0	0	0	0	0	1	6084	214	8	3		3	FSTL1	3	120122159	Silent	SNP	A	TCGA-G7-6797-01A-11D-1961-08	6745750	120122159	77900271	21	37251											
COL6A6	131873	hgsc.bcm.edu;bcgsc.ca	37	3	130311918	130311918	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	-	130311918	A	-	130311918	7	5	632	1	0	1	0	1	0	0	0	0	3705	246	9	0	4443	0	COL6A6	3	130311918	Frame_Shift_Del	DEL	A	TCGA-G7-6797-01A-11D-1961-08	10189759	130311918	67710512	22	37252											
ETV5	2119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185766603	185766603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	185766603	G	A	185766603	3	1	632	1	0	0	0	0	1	0	0	0	5284	1203	42	2	178	2	ETV5	3	185766603	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	55454685	185766603	12255827	23	37253											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187539870	187539870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	187539870	C	A	187539870	3	1	632	1	0	0	0	0	1	0	0	0	5696	884	31	4	5968	4	FAT1	4	187539870	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		187539870	3614406	24	37254											
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1335258	1335258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	1335258	A	G	1335258	3	3	632	1	0	0	0	0	1	0	0	0	3557	304	11	3	954	3	CLPTM1L	5	1335258	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08		1335258	179580002	25	37255											
RGS7BP	401190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	63905047	63905047	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	-	63905047	T	-	63905047	7	5	632	1	0	1	0	1	0	0	0	0	13324	1725	60	0	764	0	RGS7BP	5	63905047	Frame_Shift_Del	DEL	T	TCGA-G7-6797-01A-11D-1961-08	62569789	63905047	117010213	26	37256											
BHMT	635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	78426827	78426828	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	78426828	-	A	78426827	7	5	632	1	0	1	1	0	0	0	0	0	1425	594	21	0	1139	0	BHMT	5	78426827	Frame_Shift_Ins	INS	-	TCGA-G7-6797-01A-11D-1961-08	14521780	78426827	102488433	27	37257											
HLA-G	3135	ucsc.edu	37	6	29797394	29797394	+	Silent	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	29797394	G	A	29797394	2	1	632	1	0	0	0	0	0	0	0	1	7219	1306	46	2		2	HLA-G	6	29797394	Silent	SNP	G	TCGA-G7-6797-01A-11D-1961-08		29797394	141317673	28	37258											
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151626981	151626981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	151626981	C	G	151626981	3	3	632	1	0	0	0	0	1	0	0	0	448	680	24	4	268	4	AKAP12	6	151626981	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	121829587	151626981	19488086	29	37259											
PGAM2	5224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44105125	44105125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	44105125	C	A	44105125	3	1	632	1	0	0	0	0	1	0	0	0	11781	739	26	4	769	4	PGAM2	7	44105125	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		44105125	115033538	30	37260											
TMED4	222068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44621125	44621125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	44621125	A	G	44621125	3	3	632	1	0	0	0	0	1	0	0	0	16018	304	11	3	385	3	TMED4	7	44621125	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	516000	44621125	114517538	31	37261											
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	24209520	24209520	+	Silent	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	24209520	T	C	24209520	2	2	632	1	0	0	0	0	0	0	0	1	246	1461	51	3		3	ADAM28	8	24209520	Silent	SNP	T	TCGA-G7-6797-01A-11D-1961-08		24209520	122154502	32	37262											
BNIP3L	665	hgsc.bcm.edu	37	8	26240664	26240664	+	Silent	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	26240664	C	G	26240664	2	3	632	1	0	0	0	0	0	0	0	1	1479	871	31	4		4	BNIP3L	8	26240664	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	2031144	26240664	120123358	33	37263											
RAB11FIP1	80223	broad.mit.edu	37	8	37729419	37729419	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	37729419	C	A	37729419	2	1	632	1	0	0	0	0	0	0	0	1	12906	639	23	4		4	RAB11FIP1	8	37729419	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	11488755	37729419	108634603	34	37264											
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	56435874	56435874	+	Silent	SNP	C	C	G	rs4263738	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	56435874	C	G	56435874	2	3	632	1	0	0	0	0	0	0	0	1	17445	668	24	4		4	XKR4	8	56435874	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	18706455	56435874	89928148	35	37265											
HNF4G	3174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	76465335	76465335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	76465335	T	C	76465335	3	2	632	1	0	0	0	0	1	0	0	0	7261	1493	52	3	536	3	HNF4G	8	76465335	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	20029461	76465335	69898687	36	37266											
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	141745382	141745382	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	141745382	C	T	141745382	2	4	632	1	0	0	0	0	0	0	0	1	12773	726	26	2		2	PTK2	8	141745382	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	65280047	141745382	4618640	37	37267											
OPLAH	26873	broad.mit.edu	37	8	145113801	145113801	+	Splice_Site	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	-	145113801	T	-	145113801	8	5	632	1	0	1	0	1	0	0	1	0	10883	1623	56	0	3498	0	OPLAH	8	145113801	Splice_Site	DEL	T	TCGA-G7-6797-01A-11D-1961-08	3368419	145113801	1250221	38	37268											
C9orf123	90871	broad.mit.edu	37	9	7799724	7799724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	7799724	C	G	7799724	3	3	632	1	0	0	0	0	1	0	0	0	2455	652	23	4	335	4	C9orf123	9	7799724	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		7799724	133413707	39	37269											
SEC61B	10952	bcgsc.ca	37	9	101992685	101992685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	101992685	G	T	101992685	3	4	632	1	0	0	0	0	1	0	0	0	14015	1241	43	4	284	4	SEC61B	9	101992685	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	94192961	101992685	39220746	40	37270											
TBC1D13	54662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131565636	131565636	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	131565636	C	G	131565636	3	3	632	1	0	0	0	0	1	0	0	0	15614	903	32	4	681	4	TBC1D13	9	131565636	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	29572951	131565636	9647795	41	37271											
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13222572	13222572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	13222572	A	C	13222572	3	2	632	1	0	0	0	0	1	0	0	0	9392	449	16	5	920	5	MCM10	10	13222572	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08		13222572	122312175	42	37272											
PCBD1	5092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72643783	72643783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	72643783	T	C	72643783	3	2	632	1	0	0	0	0	1	0	0	0	11505	1464	51	3	79	3	PCBD1	10	72643783	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	59421211	72643783	62890964	43	37273											
ADAM8	101	ucsc.edu	37	10	135080899	135080899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	135080899	G	A	135080899	3	1	632	1	0	0	0	0	1	0	0	0	252	1348	47	2	128	2	ADAM8	10	135080899	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	62437116	135080899	453848	44	37274											
OR4C13	283092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	49974076	49974076	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	49974076	C	A	49974076	2	1	632	1	0	0	0	0	0	0	0	1	11054	816	29	4		4	OR4C13	11	49974076	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08		49974076	85032440	45	37275											
NUMA1	4926	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71723991	71723991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	71723991	G	T	71723991	3	4	632	1	0	0	0	0	1	0	0	0	10757	991	35	4	1841	4	NUMA1	11	71723991	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	21749915	71723991	63282525	46	37276											
HEBP1	50865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13140120	13140120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	13140120	T	C	13140120	3	2	632	1	0	0	0	0	1	0	0	0	7043	1435	50	3	213	3	HEBP1	12	13140120	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08		13140120	120711775	47	37277											
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27809595	27809595	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	27809595	A	C	27809595	3	2	632	1	0	0	0	0	1	0	0	0	12320	246	9	5	811	5	PPFIBP1	12	27809595	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	14669475	27809595	106042300	48	37278											
GPD1	2819	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	50503242	50503242	+	Nonsense_Mutation	SNP	C	C	G	rs116736822	byfrequency;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	50503242	C	G	50503242	4	3	632	1	0	0	0	0	0	1	0	0	6611	547	19	4	1020	4	GPD1	12	50503242	Nonsense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	22693647	50503242	83348653	49	37279											
KRT76	51350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53170736	53170736	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	-	53170736	T	-	53170736	7	5	632	1	0	1	0	1	0	0	0	0	8496	1522	53	0	1612	0	KRT76	12	53170736	Frame_Shift_Del	DEL	T	TCGA-G7-6797-01A-11D-1961-08	2667494	53170736	80681159	50	37280											
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	59271290	59271290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	59271290	C	A	59271290	3	1	632	1	0	0	0	0	1	0	0	0	8953	478	17	4	951	4	LRIG3	12	59271290	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	6100554	59271290	74580605	51	37281											
ANKRD13A	88455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110457067	110457067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	110457067	T	C	110457067	3	2	632	1	0	0	0	0	1	0	0	0	641	1725	60	3	690	3	ANKRD13A	12	110457067	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	51185777	110457067	23394828	52	37282											
N4BP2L2	10443	broad.mit.edu	37	13	33095588	33095588	+	Splice_Site	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	33095588	T	C	33095588	5	2	632	1	0	0	0	0	0	0	1	0	10119	1536	53	3	2148	3	N4BP2L2	13	33095588	Splice_Site	SNP	T	TCGA-G7-6797-01A-11D-1961-08		33095588	82074290	53	37283											
FREM2	341640	broad.mit.edu	37	13	39422803	39422803	+	Silent	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	39422803	C	G	39422803	2	3	632	1	0	0	0	0	0	0	0	1	6052	639	23	4		4	FREM2	13	39422803	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	6327215	39422803	75747075	54	37284											
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61190290	61190290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	61190290	A	C	61190290	3	2	632	1	0	0	0	0	1	0	0	0	14362	333	12	5	1854	5	SIX4	14	61190290	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08		61190290	46159250	55	37285											
GABRG3	2567	hgsc.bcm.edu	37	15	27777872	27777876	+	Frame_Shift_Del	DEL	TTCTT	TTCTT	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	TTCTT	TTCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	-	27777876	TTCTT	-	27777872	7	5	632	1	0	1	0	1	0	0	0	0	6180	1609	56	0	1287	0	GABRG3	15	27777872	Frame_Shift_Del	DEL	TTCTT	TCGA-G7-6797-01A-11D-1961-08		27777872	74753520	56	37286											
C15orf53	400359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	38988925	38988925	+	Silent	SNP	G	G	C	rs146995135	byfrequency;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	38988925	G	C	38988925	2	2	632	1	0	0	0	0	0	0	0	1	1803	1132	40	4		4	C15orf53	15	38988925	Silent	SNP	G	TCGA-G7-6797-01A-11D-1961-08	11211053	38988925	63542467	57	37287											
DTWD1	56986	broad.mit.edu	37	15	49926740	49926740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	49926740	T	G	49926740	3	3	632	1	0	0	0	0	1	0	0	0	4793	1551	54	5	426	5	DTWD1	15	49926740	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	10937815	49926740	52604652	58	37288											
IREB2	3658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78765688	78765689	+	Missense_Mutation	DNP	GT	GT	AC	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	AC	78765689	GT	AC	78765688	3	1	632	1	0	0	0	0	1	0	0	0	7833	1377	48	2	1018	2	IREB2	15	78765688	Missense_Mutation	DNP	GT	TCGA-G7-6797-01A-11D-1961-08	28838948	78765688	23765704	59	37289											
C16orf59	80178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2511752	2511752	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	2511752	C	T	2511752	2	4	632	1	0	0	0	0	0	0	0	1	1825	680	24	2		2	C16orf59	16	2511752	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08		2511752	87843001	60	37290											
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67000741	67000741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	67000741	C	A	67000741	3	1	632	1	0	0	0	0	1	0	0	0	3273	506	18	4	1065	4	CES3	16	67000741	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	64488989	67000741	23354012	61	37291											
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67576026	67576026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	67576026	G	A	67576026	3	1	632	1	0	0	0	0	1	0	0	0	5606	1116	39	1	1383	1	FAM65A	16	67576026	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	575285	67576026	22778727	62	37292											
CHMP1A	5119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89717999	89717999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	89717999	G	C	89717999	3	2	632	1	0	0	0	0	1	0	0	0	3354	1087	38	4	679	4	CHMP1A	16	89717999	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	22141973	89717999	636754	63	37293											
SLC47A2	146802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19610045	19610045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	19610045	C	G	19610045	3	3	632	1	0	0	0	0	1	0	0	0	14661	623	22	4	979	4	SLC47A2	17	19610045	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		19610045	61585165	64	37294											
ZNF207	7756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30696350	30696350	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	30696350	A	T	30696350	3	4	632	1	0	0	0	0	1	0	0	0	17777	362	13	5	1243	5	ZNF207	17	30696350	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	11086305	30696350	50498860	65	37295											
MPO	4353	ucsc.edu	37	17	56355333	56355333	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	56355333	C	T	56355333	2	4	632	1	0	0	0	0	0	0	0	1	9739	697	25	2		2	MPO	17	56355333	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	25658983	56355333	24839877	66	37296											
PPM1D	8493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58740837	58740837	+	Missense_Mutation	SNP	G	G	A	rs200809297		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	58740837	G	A	58740837	3	1	632	1	0	0	0	0	1	0	0	0	12347	1058	37	1	1764	1	PPM1D	17	58740837	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	2385504	58740837	22454373	67	37297											
SMAD7	4092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46447887	46447887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	46447887	C	T	46447887	3	4	632	1	0	0	0	0	1	0	0	0	14776	652	23	1	148	1	SMAD7	18	46447887	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		46447887	31629361	68	37298											
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19613195	19613195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	19613195	C	T	19613195	3	4	632	1	0	0	0	0	1	0	0	0	6267	536	19	1	1669	1	GATAD2A	19	19613195	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		19613195	39515788	69	37299											
ZNF30	90075	broad.mit.edu	37	19	35435141	35435141	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	35435141	G	C	35435141	3	2	632	1	0	0	0	0	1	0	0	0	17842	1232	43	4	1288	4	ZNF30	19	35435141	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	15821946	35435141	23693842	70	37300											
ZNF573	126231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38230139	38230140	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	AA	38230140	CC	AA	38230139	4	1	632	1	0	0	0	0	0	1	0	0	18017	864	30	4	749	4	ZNF573	19	38230139	Nonsense_Mutation	DNP	CC	TCGA-G7-6797-01A-11D-1961-08	2794998	38230139	20898844	71	37301											
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50097991	50097991	+	Silent	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	C	50097991	G	C	50097991	2	2	632	1	0	0	0	0	0	0	0	1	12594	1103	39	4		4	PRR12	19	50097991	Silent	SNP	G	TCGA-G7-6797-01A-11D-1961-08	11867852	50097991	9030992	72	37302											
DSN1	79980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35399580	35399580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	35399580	C	A	35399580	3	1	632	1	0	0	0	0	1	0	0	0	4782	478	17	4	1055	4	DSN1	20	35399580	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		35399580	27625940	73	37303											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30051666	30051666	+	Splice_Site	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	30051666	G	A	30051666	5	1	632	1	0	0	0	0	0	0	1	0	10364	1275	44	2	622	2	NF2	22	30051666	Splice_Site	SNP	G	TCGA-G7-6797-01A-11D-1961-08		30051666	21252900	74	37304											
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102337711	102337711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	102337711	C	T	102337711	3	4	632	1	0	0	0	0	1	0	0	0	10792	536	19	1	886	1	NXF3	23	102337711	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		102337711	52932849	75	37305											
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117731503	117731503	+	Silent	SNP	A	A	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	T	117731503	A	T	117731503	2	4	632	1	0	0	0	0	0	0	0	1	4688	175	7	5		5	DOCK11	23	117731503	Silent	SNP	A	TCGA-G7-6797-01A-11D-1961-08	15393792	117731503	37539057	76	37306											
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118223094	118223094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	G	118223094	A	G	118223094	3	3	632	1	0	0	0	0	1	0	0	0	8221	333	12	3	3046	3	KIAA1210	23	118223094	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	491591	118223094	37047466	77	37307											
PLXNA3	55558	ucsc.edu	37	X	153696321	153696321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	A	153696321	G	A	153696321	3	1	632	1	0	0	0	0	1	0	0	0	12128	1145	40	1	3875	1	PLXNA3	23	153696321	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	35473227	153696321	1574239	78	37308											
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	75114999	75114999	+	Silent	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	75114999	C	A	75114999	2	1	633	1	0	0	0	0	0	0	0	1	2016	521	18	4		4	C1orf173	1	75114999	Silent	SNP	C	TCGA-G7-7501-01A-11D-2201-08		75114999	174135622	1	37309											
INTS3	65123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153736638	153736638	+	Silent	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	G	153736638	A	G	153736638	2	3	633	1	0	0	0	0	0	0	0	1	7786	378	14	3		3	INTS3	1	153736638	Silent	SNP	A	TCGA-G7-7501-01A-11D-2201-08	78621639	153736638	95513983	2	37310											
DCAF6	55827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	167962583	167962583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	167962583	G	A	167962583	3	1	633	1	0	0	0	0	1	0	0	0	4276	1145	40	1	834	1	DCAF6	1	167962583	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	14225945	167962583	81288038	3	37311											
FAIM3	9214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207085119	207085119	+	Silent	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	207085119	G	C	207085119	2	2	633	1	0	0	0	0	0	0	0	1	5381	1219	43	4		4	FAIM3	1	207085119	Silent	SNP	G	TCGA-G7-7501-01A-11D-2201-08	39122536	207085119	42165502	4	37312											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207105817	207105817	+	Silent	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	G	207105817	C	G	207105817	2	3	633	1	0	0	0	0	0	0	0	1	11904	726	26	4		4	PIGR	1	207105817	Silent	SNP	C	TCGA-G7-7501-01A-11D-2201-08	20698	207105817	42144804	5	37313											
PLEKHB2	55041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131897791	131897791	+	Missense_Mutation	SNP	G	G	C	rs143964327		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	131897791	G	C	131897791	3	2	633	1	0	0	0	0	1	0	0	0	12072	1029	36	4	497	4	PLEKHB2	2	131897791	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		131897791	111301582	6	37314											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179567316	179567316	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	179567316	C	A	179567316	4	1	633	1	0	0	0	0	0	1	0	0	16747	835	29	4	74255	4	TTN	2	179567316	Nonsense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	47669525	179567316	63632057	7	37315											
SLC40A1	30061	broad.mit.edu	37	2	190439935	190439935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	190439935	G	C	190439935	3	2	633	1	0	0	0	0	1	0	0	0	14641	991	35	4	1516	4	SLC40A1	2	190439935	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	10872619	190439935	52759438	8	37316											
HSPE1	3336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	198365946	198365946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	G	198365946	C	G	198365946	3	3	633	1	0	0	0	0	1	0	0	0	7436	893	31	4	158	4	HSPE1	2	198365946	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	7926011	198365946	44833427	9	37317											
PLCD1	5333	ucsc.edu;bcgsc.ca	37	3	38050062	38050062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	38050062	C	A	38050062	3	1	633	1	0	0	0	0	1	0	0	0	12038	652	23	4	497	4	PLCD1	3	38050062	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		38050062	159972368	10	37318											
DNASE1L3	1776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58179114	58179114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	58179114	T	C	58179114	3	2	633	1	0	0	0	0	1	0	0	0	4665	1580	55	3	168	3	DNASE1L3	3	58179114	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08	20129052	58179114	139843316	11	37319											
PHOX2B	8929	hgsc.bcm.edu	37	4	41748007	41748007	+	Silent	SNP	T	T	G	rs17884724		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	G	41748007	T	G	41748007	2	3	633	1	0	0	0	0	0	0	0	1	11866	1567	55	5		5	PHOX2B	4	41748007	Silent	SNP	T	TCGA-G7-7501-01A-11D-2201-08		41748007	149406269	12	37320											
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89575198	89575198	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	89575198	G	T	89575198	4	4	633	1	0	0	0	0	0	1	0	0	7066	943	33	4	709	4	HERC3	4	89575198	Nonsense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	47827191	89575198	101579078	13	37321											
C4orf27	54969	ucsc.edu	37	4	170658832	170658832	+	Silent	SNP	G	G	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	170658832	G	T	170658832	2	4	633	1	0	0	0	0	0	0	0	1	2260	1124	39	4		4	C4orf27	4	170658832	Silent	SNP	G	TCGA-G7-7501-01A-11D-2201-08	81083634	170658832	20495444	14	37322											
MYOZ3	91977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150050078	150050078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	150050078	G	A	150050078	3	1	633	1	0	0	0	0	1	0	0	0	10104	1145	40	1	100	1	MYOZ3	5	150050078	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		150050078	30865182	15	37323											
HLA-DPB1	3115	hgsc.bcm.edu;broad.mit.edu	37	6	33048613	33048613	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	-	33048613	A	-	33048613	7	5	633	1	0	1	0	1	0	0	0	0	7210	246	9	0	271	0	HLA-DPB1	6	33048613	Frame_Shift_Del	DEL	A	TCGA-G7-7501-01A-11D-2201-08		33048613	138066454	16	37324											
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39159334	39159334	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	39159334	G	A	39159334	4	1	633	1	0	0	0	0	0	1	0	0	8076	1328	46	2	671	2	KCNK5	6	39159334	Nonsense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	6110721	39159334	131955733	17	37325											
AIM1	202	broad.mit.edu	37	6	106960616	106960616	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	-	106960616	C	-	106960616	7	5	633	1	0	1	0	1	0	0	0	0	430	507	18	0	402	0	AIM1	6	106960616	Frame_Shift_Del	DEL	C	TCGA-G7-7501-01A-11D-2201-08	67801282	106960616	64154451	18	37326											
TBP	6908	hgsc.bcm.edu;bcgsc.ca	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	170871004	G	A	170871004	2	1	633	1	0	0	0	0	0	0	0	1	15656	962	34	2		2	TBP	6	170871004	Silent	SNP	G	TCGA-G7-7501-01A-11D-2201-08	63910388	170871004	244063	19	37327											
DNAH11	8701	broad.mit.edu;bcgsc.ca	37	7	21630624	21630624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	21630624	G	A	21630624	3	1	633	1	0	0	0	0	1	0	0	0	4601	1000	35	2	2308	2	DNAH11	7	21630624	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		21630624	137508039	20	37328											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121679512	121679512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	121679512	A	T	121679512	3	4	633	1	0	0	0	0	1	0	0	0	12827	14	1	5	5585	5	PTPRZ1	7	121679512	Missense_Mutation	SNP	A	TCGA-G7-7501-01A-11D-2201-08	100048888	121679512	37459151	21	37329											
DRD4	1815	hgsc.bcm.edu	37	11	640253	640253	+	Missense_Mutation	SNP	C	C	G	rs200996360		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	G	640253	C	G	640253	3	3	633	1	0	0	0	0	1	0	0	0	4761	739	26	4	1014	4	DRD4	11	640253	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		640253	134366263	22	37330											
SF3B2	10992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65829382	65829382	+	Silent	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	65829382	C	A	65829382	2	1	633	1	0	0	0	0	0	0	0	1	14164	610	22	4		4	SF3B2	11	65829382	Silent	SNP	C	TCGA-G7-7501-01A-11D-2201-08	65189129	65829382	69177134	23	37331											
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72406598	72406598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	72406598	T	C	72406598	3	2	633	1	0	0	0	0	1	0	0	0	838	1580	55	3	900	3	ARAP1	11	72406598	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08	6577216	72406598	62599918	24	37332											
CAPZA3	93661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	18892035	18892035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	18892035	T	A	18892035	3	1	633	1	0	0	0	0	1	0	0	0	2644	1580	55	5	835	5	CAPZA3	12	18892035	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08		18892035	114959860	25	37333											
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52827640	52827640	+	Missense_Mutation	SNP	C	C	T	rs201256120		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	52827640	C	T	52827640	3	4	633	1	0	0	0	0	1	0	0	0	8495	768	27	1	1242	1	KRT75	12	52827640	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	33935605	52827640	81024255	26	37334											
MLXIP	22877	hgsc.bcm.edu;broad.mit.edu	37	12	122616846	122616846	+	Silent	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	122616846	C	T	122616846	2	4	633	1	0	0	0	0	0	0	0	1	9643	912	32	2		2	MLXIP	12	122616846	Silent	SNP	C	TCGA-G7-7501-01A-11D-2201-08	69789206	122616846	11235049	27	37335											
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	29600351	29600351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	29600351	G	A	29600351	3	1	633	1	0	0	0	0	1	0	0	0	9973	1377	48	2	1548	2	MTUS2	13	29600351	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		29600351	85569527	28	37336											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	35733740	35733740	+	Silent	SNP	A	A	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	35733740	A	C	35733740	2	2	633	1	0	0	0	0	0	0	0	1	10194	204	8	5		5	NBEA	13	35733740	Silent	SNP	A	TCGA-G7-7501-01A-11D-2201-08	6133389	35733740	79436138	29	37337											
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	52907333	52907333	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	52907333	G	C	52907333	3	2	633	1	0	0	0	0	1	0	0	0	16807	1377	48	4	537	4	TXNDC16	14	52907333	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		52907333	54442207	30	37338											
MORF4L1	10933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79185887	79185887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	79185887	T	C	79185887	3	2	633	1	0	0	0	0	1	0	0	0	9713	1754	61	3	702	3	MORF4L1	15	79185887	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08		79185887	23345505	31	37339											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	2059674	T	C	2059674	3	2	633	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08		2059674	88295079	32	37340											
FLYWCH2	114984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2946454	2946456	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	-	2946456	CCC	-	2946454	7	5	633	1	0	1	0	1	0	0	0	0	5955	739	26	0	6	0	FLYWCH2	16	2946454	In_Frame_Del	DEL	CCC	TCGA-G7-7501-01A-11D-2201-08	886780	2946454	87408299	33	37341	479	3									
FLYWCH2	114984	hgsc.bcm.edu;bcgsc.ca	37	16	2946458	2946458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	G	2946458	T	G	2946458	3	3	633	1	0	0	0	0	1	0	0	0	5955	1580	55	5	10	5	FLYWCH2	16	2946458	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08	4	2946458	87408295	34	37342	479	3									
FLYWCH2	114984	hgsc.bcm.edu;bcgsc.ca	37	16	2946461	2946461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	2946461	C	A	2946461	3	1	633	1	0	0	0	0	1	0	0	0	5955	623	22	4	13	4	FLYWCH2	16	2946461	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	3	2946461	87408292	35	37343	479	3									
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24582258	24582258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	24582258	A	C	24582258	3	2	633	1	0	0	0	0	1	0	0	0	13116	43	2	5	3995	5	RBBP6	16	24582258	Missense_Mutation	SNP	A	TCGA-G7-7501-01A-11D-2201-08	21635797	24582258	65772495	36	37344											
FBXO31	79791	hgsc.bcm.edu	37	16	87377237	87377237	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	87377237	G	C	87377237	4	2	633	1	0	0	0	0	0	1	0	0	5748	1140	40	4	1019	4	FBXO31	16	87377237	Nonsense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	62794979	87377237	2977516	37	37345											
NPTX1	4884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78444656	78444656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	78444656	C	A	78444656	3	1	633	1	0	0	0	0	1	0	0	0	10609	623	22	4	46	4	NPTX1	17	78444656	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		78444656	2750554	38	37346											
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	11558370	G	A	11558370	2	1	633	1	0	0	0	0	0	0	0	1	12526	991	35	2		2	PRKCSH	19	11558370	Silent	SNP	G	TCGA-G7-7501-01A-11D-2201-08		11558370	47570613	39	37347											
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12060128	12060128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	12060128	C	T	12060128	3	4	633	1	0	0	0	0	1	0	0	0	18116	739	26	2	1303	2	ZNF700	19	12060128	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	501758	12060128	47068855	40	37348											
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39914552	39914552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	G	39914552	C	G	39914552	3	3	633	1	0	0	0	0	1	0	0	0	12076	681	24	4	2849	4	PLEKHG2	19	39914552	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	27854424	39914552	19214431	41	37349											
ZNF45	7596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44418234	44418234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	44418234	C	T	44418234	3	4	633	1	0	0	0	0	1	0	0	0	17933	623	22	2	698	2	ZNF45	19	44418234	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	4503682	44418234	14710749	42	37350											
SLC8A2	6543	hgsc.bcm.edu;broad.mit.edu	37	19	47969527	47969527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	47969527	C	T	47969527	3	4	633	1	0	0	0	0	1	0	0	0	14720	623	22	2	2667	2	SLC8A2	19	47969527	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	3551293	47969527	11159456	43	37351											
ZNF606	80095	broad.mit.edu	37	19	58490170	58490170	+	Silent	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	G	58490170	A	G	58490170	2	3	633	1	0	0	0	0	0	0	0	1	18044	389	14	3		3	ZNF606	19	58490170	Silent	SNP	A	TCGA-G7-7501-01A-11D-2201-08	10520643	58490170	638813	44	37352											
NAPB	63908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23370612	23370612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	G	23370612	A	G	23370612	3	3	633	1	0	0	0	0	1	0	0	0	10169	391	14	3	384	3	NAPB	20	23370612	Missense_Mutation	SNP	A	TCGA-G7-7501-01A-11D-2201-08		23370612	39654908	45	37353											
LIPI	149998	hgsc.bcm.edu	37	21	15579137	15579137	+	Silent	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	C	15579137	T	C	15579137	2	2	633	1	0	0	0	0	0	0	0	1	8832	1594	55	3		3	LIPI	21	15579137	Silent	SNP	T	TCGA-G7-7501-01A-11D-2201-08		15579137	32550758	46	37354											
RIPK4	54101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43161570	43161570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	A	43161570	C	A	43161570	3	1	633	1	0	0	0	0	1	0	0	0	13396	507	18	4	575	4	RIPK4	21	43161570	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	27582433	43161570	4968325	47	37355											
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	17073382	17073382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	17073382	C	T	17073382	3	4	633	1	0	0	0	0	1	0	0	0	2963	681	24	2	1618	2	CCT8L2	22	17073382	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		17073382	34231184	48	37356											
SHROOM2	357	broad.mit.edu	37	X	9863548	9863548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	9863548	C	T	9863548	3	4	633	1	0	0	0	0	1	0	0	0	14307	527	19	1	1614	1	SHROOM2	23	9863548	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		9863548	145407012	49	37357											
TRPC5	7224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	111090414	111090416	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	-	111090416	TCA	-	111090414	7	5	633	1	0	1	0	1	0	0	0	0	16594	1783	62	0	1317	0	TRPC5	23	111090414	In_Frame_Del	DEL	TCA	TCGA-G7-7501-01A-11D-2201-08	101226866	111090414	44180146	50	37358											
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	138684576	138684576	+	Missense_Mutation	SNP	C	C	T	rs202133857		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	T	138684576	C	T	138684576	3	4	633	1	0	0	0	0	1	0	0	0	9385	768	27	1	1020	1	MCF2	23	138684576	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	27594162	138684576	16585984	51	37359											
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7845603	7845603	+	Silent	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	7845603	A	C	7845603	2	2	634	1	0	0	0	0	0	0	0	1	11738	407	15	5		5	PER3	1	7845603	Silent	SNP	A	TCGA-G7-7502-01A-11D-2201-08		7845603	241405018	1	37360											
PRAMEF1	65121	broad.mit.edu	37	1	12855985	12855985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	12855985	T	C	12855985	3	2	634	1	0	0	0	0	1	0	0	0	12435	1821	63	3	1275	3	PRAMEF1	1	12855985	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	5010382	12855985	236394636	2	37361											
PTAFR	5724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	28477260	28477260	+	Silent	SNP	G	G	A	rs146920734		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	28477260	G	A	28477260	2	1	634	1	0	0	0	0	0	0	0	1	12733	1136	40	1		1	PTAFR	1	28477260	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	15621275	28477260	220773361	3	37362											
MECR	51102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	29520539	29520539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	29520539	T	A	29520539	3	1	634	1	0	0	0	0	1	0	0	0	9431	1464	51	5	8	5	MECR	1	29520539	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	1043279	29520539	219730082	4	37363											
TXLNA	200081	hgsc.bcm.edu;broad.mit.edu	37	1	32646099	32646099	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	32646099	T	C	32646099	2	2	634	1	0	0	0	0	0	0	0	1	16799	1538	54	3		3	TXLNA	1	32646099	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08	3125560	32646099	216604522	5	37364											
CDCA8	55143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38174030	38174030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	38174030	C	T	38174030	3	4	634	1	0	0	0	0	1	0	0	0	3094	594	21	2	873	2	CDCA8	1	38174030	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	5527931	38174030	211076591	6	37365											
LRRC40	55631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70671136	70671136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	70671136	C	G	70671136	3	3	634	1	0	0	0	0	1	0	0	0	9005	681	24	4	1780	4	LRRC40	1	70671136	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	32497106	70671136	178579485	7	37366											
ODF2L	57489	hgsc.bcm.edu	37	1	86842001	86842001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	86842001	A	G	86842001	3	3	634	1	0	0	0	0	1	0	0	0	10835	372	13	3	1405	3	ODF2L	1	86842001	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	16170865	86842001	162408620	8	37367											
NTNG1	22854	hgsc.bcm.edu	37	1	107973392	107973392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	107973392	T	C	107973392	3	2	634	1	0	0	0	0	1	0	0	0	10711	1551	54	3	1260	3	NTNG1	1	107973392	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	21131391	107973392	141277229	9	37368											
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669896	158669896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	158669896	C	T	158669896	3	4	634	1	0	0	0	0	1	0	0	0	11209	565	20	2	431	2	OR6K2	1	158669896	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	50696504	158669896	90580725	10	37369											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176740277	176740277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	176740277	G	T	176740277	3	4	634	1	0	0	0	0	1	0	0	0	11440	1232	43	4	4791	4	PAPPA2	1	176740277	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	18070381	176740277	72510344	11	37370											
CFHR3	10878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196762616	196762617	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	TT	196762617	GA	TT	196762616	3	4	634	1	0	0	0	0	1	0	0	0	3288	1161	41	4	988	4	CFHR3	1	196762616	Missense_Mutation	DNP	GA	TCGA-G7-7502-01A-11D-2201-08	20022339	196762616	52488005	12	37371											
OTX1	5013	hgsc.bcm.edu	37	2	63282948	63282948	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	63282948	C	G	63282948	3	3	634	1	0	0	0	0	1	0	0	0	11327	739	26	4	572	4	OTX1	2	63282948	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08		63282948	179916425	13	37372											
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	86716748	86716749	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	GGG	86716749	-	GGG	86716748	7	5	634	1	0	1	1	0	0	0	0	0	8133	72	3	0	3625	0	KDM3A	2	86716748	In_Frame_Ins	INS	-	TCGA-G7-7502-01A-11D-2201-08	23433800	86716748	156482625	14	37373											
CIR1	9541	hgsc.bcm.edu;broad.mit.edu	37	2	175215408	175215408	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	175215408	T	C	175215408	2	2	634	1	0	0	0	0	0	0	0	1	3434	1722	60	3		3	CIR1	2	175215408	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08	88498660	175215408	67983965	15	37374											
STK36	27148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219556970	219556970	+	Silent	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	219556970	C	G	219556970	2	3	634	1	0	0	0	0	0	0	0	1	15314	842	30	4		4	STK36	2	219556970	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	44341562	219556970	23642403	16	37375											
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	233350797	233350797	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	233350797	G	A	233350797	2	1	634	1	0	0	0	0	0	0	0	1	4893	1368	48	2		2	ECEL1	2	233350797	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	13793827	233350797	9848576	17	37376											
JAGN1	84522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9934676	9934676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	9934676	G	A	9934676	3	1	634	1	0	0	0	0	1	0	0	0	7943	971	34	2	173	2	JAGN1	3	9934676	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		9934676	188087754	18	37377											
DAG1	1605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	49568641	49568641	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	-	49568641	A	-	49568641	7	5	634	1	0	1	0	1	0	0	0	0	4227	362	13	0	703	0	DAG1	3	49568641	Frame_Shift_Del	DEL	A	TCGA-G7-7502-01A-11D-2201-08	39633965	49568641	148453789	19	37378											
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49720689	49720689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	49720689	A	G	49720689	3	3	634	1	0	0	0	0	1	0	0	0	768	72	3	3	2199	3	APEH	3	49720689	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	152048	49720689	148301741	20	37379											
ACY1	95	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52022538	52022538	+	Splice_Site	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	52022538	A	C	52022538	5	2	634	1	0	0	0	0	0	0	1	0	226	202	7	5	966	5	ACY1	3	52022538	Splice_Site	SNP	A	TCGA-G7-7502-01A-11D-2201-08	2301849	52022538	145999892	21	37380											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52554291	52554291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	52554291	C	A	52554291	4	1	634	1	0	0	0	0	0	1	0	0	15249	718	25	4	5690	4	STAB1	3	52554291	Nonsense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	531753	52554291	145468139	22	37381											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108110610	108110610	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	108110610	G	A	108110610	2	1	634	1	0	0	0	0	0	0	0	1	10041	1335	47	2		2	MYH15	3	108110610	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	55556319	108110610	89911820	23	37382											
FAM162A	26355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122128621	122128621	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	122128621	C	T	122128621	2	4	634	1	0	0	0	0	0	0	0	1	5478	564	20	2		2	FAM162A	3	122128621	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	14018011	122128621	75893809	24	37383											
PLXNA1	5361	broad.mit.edu	37	3	126730880	126730880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	126730880	A	C	126730880	3	2	634	1	0	0	0	0	1	0	0	0	12126	43	2	5	2226	5	PLXNA1	3	126730880	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	4602259	126730880	71291550	25	37384											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142238533	142238533	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	142238533	G	A	142238533	2	1	634	1	0	0	0	0	0	0	0	1	1204	1020	36	2		2	ATR	3	142238533	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	15507653	142238533	55783897	26	37385											
FXR1	8087	hgsc.bcm.edu	37	3	180693192	180693192	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	180693192	G	C	180693192	3	2	634	1	0	0	0	0	1	0	0	0	6122	1362	47	4	1757	4	FXR1	3	180693192	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	38454659	180693192	17329238	27	37386											
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	40122970	40122970	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	-	40122970	A	-	40122970	7	5	634	1	0	1	0	1	0	0	0	0	10117	246	9	0	3265	0	N4BP2	4	40122970	Frame_Shift_Del	DEL	A	TCGA-G7-7502-01A-11D-2201-08		40122970	151031306	28	37387											
LNX1	84708	broad.mit.edu;bcgsc.ca	37	4	54362298	54362298	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	54362298	G	A	54362298	2	1	634	1	0	0	0	0	0	0	0	1	8872	1074	38	1		1	LNX1	4	54362298	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	14239328	54362298	136791978	29	37388											
ANP32C	23520	broad.mit.edu	37	4	165118517	165118517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	165118517	A	G	165118517	3	3	634	1	0	0	0	0	1	0	0	0	707	72	3	3	360	3	ANP32C	4	165118517	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	110756219	165118517	26035759	30	37389											
SLC9A3	6550	hgsc.bcm.edu	37	5	475016	475016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	475016	A	G	475016	3	3	634	1	0	0	0	0	1	0	0	0	14726	304	11	3	29	3	SLC9A3	5	475016	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		475016	180440244	31	37390											
NIPAL4	348938	hgsc.bcm.edu	37	5	156899851	156899851	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	156899851	C	T	156899851	2	4	634	1	0	0	0	0	0	0	0	1	10434	639	23	1		1	NIPAL4	5	156899851	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	156424835	156899851	24015409	32	37391											
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31864742	31864742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	31864742	C	A	31864742	3	1	634	1	0	0	0	0	1	0	0	0	4986	739	26	4	3673	4	EHMT2	6	31864742	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08		31864742	139250325	33	37392											
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32945266	32945266	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	32945266	T	C	32945266	2	2	634	1	0	0	0	0	0	0	0	1	1504	1567	55	3		3	BRD2	6	32945266	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08	1080524	32945266	138169801	34	37393											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38913344	38913344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	38913344	T	C	38913344	3	2	634	1	0	0	0	0	1	0	0	0	4609	1493	52	3	11760	3	DNAH8	6	38913344	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	5968078	38913344	132201723	35	37394											
MRPL2	51069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43023807	43023820	+	Frame_Shift_Del	DEL	GCCATCTCTCACCT	GCCATCTCTCACCT	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	GCCATCTCTCACCT	GCCATCTCTCACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	-	43023820	GCCATCTCTCACCT	-	43023807	7	5	634	1	0	1	0	1	0	0	0	0	9792	986	34	0		0	MRPL2	6	43023807	Frame_Shift_Del	DEL	GCCATCTCTCACCT	TCGA-G7-7502-01A-11D-2201-08	4110463	43023807	128091260	36	37395											
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44224125	44224125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	44224125	G	C	44224125	3	2	634	1	0	0	0	0	1	0	0	0	14589	1116	39	4	992	4	SLC35B2	6	44224125	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	1200318	44224125	126890942	37	37396											
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132694134	132694134	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	132694134	A	C	132694134	3	2	634	1	0	0	0	0	1	0	0	0	9727	446	16	5	1467	5	MOXD1	6	132694134	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	88470009	132694134	38420933	38	37397											
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139563747	139563747	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	139563747	T	C	139563747	2	2	634	1	0	0	0	0	0	0	0	1	16800	1567	55	3		3	TXLNB	6	139563747	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08	6869613	139563747	31551320	39	37398											
PHF10	55274	ucsc.edu	37	6	170117955	170117955	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	170117955	C	A	170117955	4	1	634	1	0	0	0	0	0	1	0	0	11828	922	32	4	1159	4	PHF10	6	170117955	Nonsense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	30554208	170117955	997112	40	37399											
TWISTNB	221830	ucsc.edu	37	7	19738032	19738032	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	19738032	C	T	19738032	2	4	634	1	0	0	0	0	0	0	0	1	16796	912	32	2		2	TWISTNB	7	19738032	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08		19738032	139400631	41	37400											
HOXA10	3206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27211695	27211695	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	27211695	C	T	27211695	2	4	634	1	0	0	0	0	0	0	0	1	7296	912	32	2		2	HOXA10	7	27211695	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	7473663	27211695	131926968	42	37401											
PON2	5445	broad.mit.edu	37	7	95035516	95035516	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	-	95035516	G	-	95035516	7	5	634	1	0	1	0	1	0	0	0	0	12256	1000	35	0	251	0	PON2	7	95035516	Frame_Shift_Del	DEL	G	TCGA-G7-7502-01A-11D-2201-08	67823821	95035516	64103147	43	37402											
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	32463201	32463201	+	Missense_Mutation	SNP	G	G	A	rs78513616	bycluster	TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	32463201	G	A	32463201	3	1	634	1	0	0	0	0	1	0	0	0	10654	1130	39	1	1161	1	NRG1	8	32463201	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		32463201	113900821	44	37403											
GPR124	25960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	37692907	37692907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	37692907	C	G	37692907	3	3	634	1	0	0	0	0	1	0	0	0	6645	854	30	4	1849	4	GPR124	8	37692907	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	5229706	37692907	108671115	45	37404											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128121733	128121733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	128121733	G	A	128121733	3	1	634	1	0	0	0	0	1	0	0	0	6246	1029	36	2	4181	2	GAPVD1	9	128121733	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		128121733	13091698	46	37405											
OLAH	55301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15107661	15107661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	15107661	G	A	15107661	3	1	634	1	0	0	0	0	1	0	0	0	10858	1000	35	2	662	2	OLAH	10	15107661	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		15107661	120427086	47	37406											
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26725363	26725363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	26725363	A	C	26725363	3	2	634	1	0	0	0	0	1	0	0	0	14677	214	8	5	1243	5	SLC5A12	11	26725363	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		26725363	108281153	48	37407											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62293750	62293750	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	-	62293750	G	-	62293750	7	5	634	1	0	1	0	1	0	0	0	0	414	1020	36	0	9653	0	AHNAK	11	62293750	Frame_Shift_Del	DEL	G	TCGA-G7-7502-01A-11D-2201-08	35568387	62293750	72712766	49	37408											
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66625625	66625625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	66625625	C	T	66625625	3	4	634	1	0	0	0	0	1	0	0	0	8947	652	23	1	412	1	LRFN4	11	66625625	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	4331875	66625625	68380891	50	37409											
LRP5	4041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	68205929	68205929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	68205929	C	T	68205929	3	4	634	1	0	0	0	0	1	0	0	0	8967	623	22	2	4205	2	LRP5	11	68205929	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	1580304	68205929	66800587	51	37410											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49433380	49433380	+	Silent	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	49433380	C	G	49433380	2	3	634	1	0	0	0	0	0	0	0	1	9628	697	25	4		4	MLL2	12	49433380	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08		49433380	84418515	52	37411											
POLR3B	55703	broad.mit.edu	37	12	106889911	106889911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	106889911	C	A	106889911	3	1	634	1	0	0	0	0	1	0	0	0	12236	594	21	4	2886	4	POLR3B	12	106889911	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	57456531	106889911	26961984	53	37412											
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113306301	113306301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	113306301	C	A	113306301	3	1	634	1	0	0	0	0	1	0	0	0	13564	739	26	4	533	4	RPH3A	12	113306301	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	6416390	113306301	20545594	54	37413											
FBXW8	26259	hgsc.bcm.edu	37	12	117348921	117348921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	117348921	C	G	117348921	3	3	634	1	0	0	0	0	1	0	0	0	5777	760	27	4	81	4	FBXW8	12	117348921	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	4042620	117348921	16502974	55	37414											
CCDC62	84660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123286278	123286278	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	123286278	A	T	123286278	3	4	634	1	0	0	0	0	1	0	0	0	2835	217	8	5	1619	5	CCDC62	12	123286278	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	5937357	123286278	10565617	56	37415											
SLC15A4	121260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	129283926	129283926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	129283926	A	G	129283926	3	3	634	1	0	0	0	0	1	0	0	0	14414	217	8	3	290	3	SLC15A4	12	129283926	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	5997648	129283926	4567969	57	37416											
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	84453895	84453895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	84453895	G	A	84453895	3	1	634	1	0	0	0	0	1	0	0	0	14755	971	34	2	346	2	SLITRK1	13	84453895	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		84453895	30715983	58	37417											
UBAC2	337867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99890774	99890774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	99890774	T	C	99890774	3	2	634	1	0	0	0	0	1	0	0	0	16847	1696	59	3	291	3	UBAC2	13	99890774	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	15436879	99890774	15279104	59	37418											
LAMP1	3916	broad.mit.edu	37	13	113960803	113960803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	113960803	T	C	113960803	3	2	634	1	0	0	0	0	1	0	0	0	8624	1551	54	3	71	3	LAMP1	13	113960803	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	14070029	113960803	1209075	60	37419											
FOXG1	2290	hgsc.bcm.edu	37	14	29237806	29237806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	29237806	T	C	29237806	3	2	634	1	0	0	0	0	1	0	0	0	6014	1551	54	3	1323	3	FOXG1	14	29237806	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08		29237806	78111734	61	37420											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40914067	40914068	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	-	40914068	TT	-	40914067	7	5	634	1	0	1	0	1	0	0	0	0	2665	1490	52	0	1721	0	CASC5	15	40914067	Frame_Shift_Del	DEL	TT	TCGA-G7-7502-01A-11D-2201-08		40914067	61617325	62	37421											
SPTBN5	51332	broad.mit.edu	37	15	42178141	42178141	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	-	42178141	G	-	42178141	7	5	634	1	0	1	0	1	0	0	0	0	15134	1115	39	0	9960	0	SPTBN5	15	42178141	Frame_Shift_Del	DEL	G	TCGA-G7-7502-01A-11D-2201-08	1264074	42178141	60353251	63	37422											
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	73428245	73428245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	73428245	G	T	73428245	3	4	634	1	0	0	0	0	1	0	0	0	10343	1261	44	4	910	4	NEO1	15	73428245	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	31250104	73428245	29103147	64	37423											
SCAMP2	10066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75142970	75142970	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	75142970	A	T	75142970	3	4	634	1	0	0	0	0	1	0	0	0	13884	188	7	5	488	5	SCAMP2	15	75142970	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	1714725	75142970	27388422	65	37424											
ZSCAN2	54993	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	85159554	85159554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	85159554	G	A	85159554	3	1	634	1	0	0	0	0	1	0	0	0	18243	1145	40	1	478	1	ZSCAN2	15	85159554	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	10016584	85159554	17371838	66	37425											
CHTF18	63922	hgsc.bcm.edu	37	16	845697	845697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	845697	A	G	845697	3	3	634	1	0	0	0	0	1	0	0	0	3416	333	12	3	2254	3	CHTF18	16	845697	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		845697	89509056	67	37426											
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	2059674	T	C	2059674	3	2	634	1	0	0	0	0	1	0	0	0	18040	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	1213977	2059674	88295079	68	37427											
C16orf59	80178	hgsc.bcm.edu	37	16	2511166	2511166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	2511166	G	C	2511166	3	2	634	1	0	0	0	0	1	0	0	0	1825	962	34	4	560	4	C16orf59	16	2511166	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	451492	2511166	87843587	69	37428											
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu	37	16	20482481	20482481	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	20482481	C	G	20482481	3	3	634	1	0	0	0	0	1	0	0	0	183	623	22	4	697	4	ACSM2A	16	20482481	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	17971315	20482481	69872272	70	37429											
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27761006	27761006	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	27761006	T	A	27761006	3	1	634	1	0	0	0	0	1	0	0	0	8190	1551	54	5	2787	5	KIAA0556	16	27761006	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	7278525	27761006	62593747	71	37430											
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29884867	29884867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	29884867	T	A	29884867	3	1	634	1	0	0	0	0	1	0	0	0	14157	1841	64	5	507	5	SEZ6L2	16	29884867	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	2123861	29884867	60469886	72	37431											
HEATR3	55027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50104088	50104088	+	Splice_Site	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	50104088	G	A	50104088	5	1	634	1	0	0	0	0	0	0	1	0	7036	1043	36	2	413	2	HEATR3	16	50104088	Splice_Site	SNP	G	TCGA-G7-7502-01A-11D-2201-08	20219221	50104088	40250665	73	37432											
AMFR	267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56401438	56401438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	56401438	C	A	56401438	3	1	634	1	0	0	0	0	1	0	0	0	571	666	23	4	426	4	AMFR	16	56401438	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	6297350	56401438	33953315	74	37433											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu	37	16	70866949	70866949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	70866949	T	A	70866949	3	1	634	1	0	0	0	0	1	0	0	0	7474	1490	52	5	1692	5	HYDIN	16	70866949	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	14465511	70866949	19487804	75	37434											
GRB7	2886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37898588	37898588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	37898588	A	G	37898588	3	3	634	1	0	0	0	0	1	0	0	0	6766	188	7	3	36	3	GRB7	17	37898588	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		37898588	43296622	76	37435											
KRT13	3860	broad.mit.edu	37	17	39658827	39658827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	39658827	G	A	39658827	3	1	634	1	0	0	0	0	1	0	0	0	8457	1145	40	1	345	1	KRT13	17	39658827	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	1760239	39658827	41536383	77	37436											
CDC27	996	hgsc.bcm.edu	37	17	45234484	45234484	+	Missense_Mutation	SNP	T	T	C	rs202100614		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	45234484	T	C	45234484	3	2	634	1	0	0	0	0	1	0	0	0	3068	1841	64	3	1907	3	CDC27	17	45234484	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	5575657	45234484	35960726	78	37437											
CDK5RAP3	80279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46058013	46058013	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	T	46058013	C	T	46058013	2	4	634	1	0	0	0	0	0	0	0	1	3149	680	24	2		2	CDK5RAP3	17	46058013	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	823529	46058013	35137197	79	37438											
RANBP3	8498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5941706	5941706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	5941706	T	C	5941706	3	2	634	1	0	0	0	0	1	0	0	0	13042	1783	62	3	1423	3	RANBP3	19	5941706	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08		5941706	53187277	80	37439											
CLEC4M	10332	hgsc.bcm.edu	37	19	7830937	7830937	+	Missense_Mutation	SNP	G	G	C	rs59002457		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	7830937	G	C	7830937	3	2	634	1	0	0	0	0	1	0	0	0	3520	1175	41	4	663	4	CLEC4M	19	7830937	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	1889231	7830937	51298046	81	37440											
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	8527467	T	G	8527467	5	3	634	1	0	0	0	0	0	0	1	0	7278	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-G7-7502-01A-11D-2201-08	696530	8527467	50601516	82	37441											
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	10250732	10250732	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	-	10250732	A	-	10250732	7	5	634	1	0	1	0	1	0	0	0	0	4677	246	9	0	1138	0	DNMT1	19	10250732	Frame_Shift_Del	DEL	A	TCGA-G7-7502-01A-11D-2201-08	1723265	10250732	48878251	83	37442											
TMED1	11018	hgsc.bcm.edu;bcgsc.ca	37	19	10945675	10945675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	G	10945675	C	G	10945675	3	3	634	1	0	0	0	0	1	0	0	0	16014	507	18	4	291	4	TMED1	19	10945675	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	694943	10945675	48183308	84	37443											
ZNF101	94039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19789581	19789581	+	Silent	SNP	G	G	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	19789581	G	C	19789581	2	2	634	1	0	0	0	0	0	0	0	1	17726	1335	47	4		4	ZNF101	19	19789581	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	8843906	19789581	39339402	85	37444											
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36831515	36831515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	36831515	A	C	36831515	3	2	634	1	0	0	0	0	1	0	0	0	17651	72	3	5	392	5	ZFP14	19	36831515	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	17041934	36831515	22297468	86	37445											
ZNF776	284309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58265245	58265245	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	-	58265245	T	-	58265245	7	5	634	1	0	1	0	1	0	0	0	0	18161	1403	49	0	757	0	ZNF776	19	58265245	Frame_Shift_Del	DEL	T	TCGA-G7-7502-01A-11D-2201-08	21433730	58265245	863738	87	37446											
CHGB	1114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	5903930	5903930	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	5903930	T	C	5903930	2	2	634	1	0	0	0	0	0	0	0	1	3341	1722	60	3		3	CHGB	20	5903930	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08		5903930	57121590	88	37447											
TUBB1	81027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57599037	57599037	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	57599037	G	A	57599037	2	1	634	1	0	0	0	0	0	0	0	1	16765	1103	39	1		1	TUBB1	20	57599037	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	51695107	57599037	5426483	89	37448											
COL6A1	1291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47423886	47423886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	47423886	G	A	47423886	3	1	634	1	0	0	0	0	1	0	0	0	3701	1377	48	2	3184	2	COL6A1	21	47423886	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		47423886	706009	90	37449											
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19966432	19966432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	A	19966432	G	A	19966432	3	1	634	1	0	0	0	0	1	0	0	0	1003	1059	37	1	1372	1	ARVCF	22	19966432	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		19966432	31338134	91	37450											
OSM	5008	hgsc.bcm.edu	37	22	30660245	30660245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	30660245	T	C	30660245	3	2	634	1	0	0	0	0	1	0	0	0	11298	1725	60	3	376	3	OSM	22	30660245	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	10693813	30660245	20644321	92	37451											
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37334445	37334446	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	TT	37334446	GC	TT	37334445	3	4	634	1	0	0	0	0	1	0	0	0	3937	1306	46	4	2645	4	CSF2RB	22	37334445	Missense_Mutation	DNP	GC	TCGA-G7-7502-01A-11D-2201-08	6674200	37334445	13970121	93	37452											
KDM5D	8284	hgsc.bcm.edu	37	Y	21901510	21901510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	C	21901510	A	C	21901510	3	2	634	1	0	0	0	0	1	0	0	0	8143	446	16	5	4243	5	KDM5D	24	21901510	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		21901510	37472056	94	37453											
PAQR7	164091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	26189753	26189755	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	-	26189755	TTG	-	26189753	7	5	635	1	0	1	0	1	0	0	0	0	11447	1609	56	0	466	0	PAQR7	1	26189753	In_Frame_Del	DEL	TTG	TCGA-G7-A4TM-01A-11D-A31X-10		26189753	223060868	1	37454											
WASF2	10163	hgsc.bcm.edu	37	1	27736340	27736340	+	Silent	SNP	A	A	G	rs71584884	alternate_allele	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	27736340	A	G	27736340	2	3	635	1	0	0	0	0	0	0	0	1	17265	291	11	3		3	WASF2	1	27736340	Silent	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	1546587	27736340	221514281	2	37455											
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27876672	27876673	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	-	27876673	GT	-	27876672	7	5	635	1	0	1	0	1	0	0	0	0	412	1261	44	0	2860	0	AHDC1	1	27876672	Frame_Shift_Del	DEL	GT	TCGA-G7-A4TM-01A-11D-A31X-10	140332	27876672	221373949	3	37456											
FOXJ3	22887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42744042	42744042	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	A	42744042	T	A	42744042	4	1	635	1	0	0	0	0	0	1	0	0	6020	1530	53	5	1566	5	FOXJ3	1	42744042	Nonsense_Mutation	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10	14867370	42744042	206506579	4	37457											
RHOC	389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113244309	113244309	+	Silent	SNP	C	C	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	113244309	C	G	113244309	2	3	635	1	0	0	0	0	0	0	0	1	13349	610	22	4		4	RHOC	1	113244309	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	70500267	113244309	136006312	5	37458											
IVL	3713	broad.mit.edu	37	1	152882868	152882868	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	152882868	C	G	152882868	3	3	635	1	0	0	0	0	1	0	0	0	7936	711	25	4	597	4	IVL	1	152882868	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	39638559	152882868	96367753	6	37459											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214815619	214815619	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	214815619	A	T	214815619	3	4	635	1	0	0	0	0	1	0	0	0	3233	246	9	5	3980	5	CENPF	1	214815619	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	61932751	214815619	34435002	7	37460											
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44539791	44539791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	44539791	A	G	44539791	3	3	635	1	0	0	0	0	1	0	0	0	14639	217	8	3	1429	3	SLC3A1	2	44539791	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10		44539791	198659582	8	37461											
DCBLD2	131566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98600601	98600601	+	Silent	SNP	A	A	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	98600601	A	G	98600601	2	3	635	1	0	0	0	0	0	0	0	1	4283	157	6	3		3	DCBLD2	3	98600601	Silent	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10		98600601	99421829	9	37462											
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122722615	122722615	+	Silent	SNP	C	C	T	rs150604288	alternate_allele	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	122722615	C	T	122722615	2	4	635	1	0	0	0	0	0	0	0	1	5323	784	28	2		2	EXOSC9	4	122722615	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10		122722615	68431661	10	37463											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179201053	179201053	+	Silent	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	A	179201053	G	A	179201053	2	1	635	1	0	0	0	0	0	0	0	1	9212	1335	47	2		2	MAML1	5	179201053	Silent	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		179201053	1714207	11	37464											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7584156	7584156	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	C	7584156	G	C	7584156	3	2	635	1	0	0	0	0	1	0	0	0	4783	1291	45	4	6755	4	DSP	6	7584156	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		7584156	163530911	12	37465											
ZP3	7784	ucsc.edu	37	7	76069823	76069823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	A	76069823	T	A	76069823	3	1	635	1	0	0	0	0	1	0	0	0	18229	1580	55	5	981	5	ZP3	7	76069823	Missense_Mutation	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10		76069823	83068840	13	37466											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151874152	151874158	+	Frame_Shift_Del	DEL	TTTTTGG	TTTTTGG	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	TTTTTGG	TTTTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	-	151874158	TTTTTGG	-	151874152	7	5	635	1	0	1	0	1	0	0	0	0	9629	1850	64	0	6437	0	MLL3	7	151874152	Frame_Shift_Del	DEL	TTTTTGG	TCGA-G7-A4TM-01A-11D-A31X-10	75804329	151874152	7264511	14	37467											
RBM33	155435	broad.mit.edu	37	7	155532557	155532557	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	C	155532557	A	C	155532557	3	2	635	1	0	0	0	0	1	0	0	0	13143	159	6	5	1932	5	RBM33	7	155532557	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	3658405	155532557	3606106	15	37468											
NAT1	9	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	18080420	18080420	+	Silent	SNP	T	T	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	C	18080420	T	C	18080420	2	2	635	1	0	0	0	0	0	0	0	1	10180	1751	61	3		3	NAT1	8	18080420	Silent	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10		18080420	128283602	16	37469											
RNF139	11236	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	125487509	125487509	+	Silent	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	125487509	C	T	125487509	2	4	635	1	0	0	0	0	0	0	0	1	13455	842	30	2		2	RNF139	8	125487509	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	107407089	125487509	20876513	17	37470											
ELAVL2	1993	broad.mit.edu	37	9	23762097	23762097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	23762097	G	T	23762097	3	4	635	1	0	0	0	0	1	0	0	0	5052	1000	35	4	967	4	ELAVL2	9	23762097	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		23762097	117451334	18	37471											
CLTA	1211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36209297	36209297	+	Silent	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	36209297	C	T	36209297	2	4	635	1	0	0	0	0	0	0	0	1	3566	883	31	1		1	CLTA	9	36209297	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	12447200	36209297	105004134	19	37472											
PRUNE2	158471	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	79318374	79318374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	A	79318374	G	A	79318374	3	1	635	1	0	0	0	0	1	0	0	0	12651	1348	47	2	1155	2	PRUNE2	9	79318374	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	43109077	79318374	61895057	20	37473											
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88227091	88227091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	88227091	A	G	88227091	3	3	635	1	0	0	0	0	1	0	0	0	17260	333	12	3	1301	3	WAPAL	10	88227091	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10		88227091	47307656	21	37474											
MUC6	4588	bcgsc.ca	37	11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	C	1016801	G	C	1016801	3	2	635	1	0	0	0	0	1	0	0	0	9987	1252	44	4	1331	4	MUC6	11	1016801	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		1016801	133989715	22	37475											
LSP1	4046	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	1887915	1887915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	1887915	G	T	1887915	3	4	635	1	0	0	0	0	1	0	0	0	9070	1189	41	4		4	LSP1	11	1887915	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	871114	1887915	133118601	23	37476											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62301415	62301415	+	Silent	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	62301415	C	T	62301415	2	4	635	1	0	0	0	0	0	0	0	1	414	639	23	1		1	AHNAK	11	62301415	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	60413500	62301415	72705101	24	37477											
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94341805	94341805	+	Silent	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	94341805	C	T	94341805	2	4	635	1	0	0	0	0	0	0	0	1	11967	535	19	1		1	PIWIL4	11	94341805	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	32040390	94341805	40664711	25	37478											
PRB1	5542	broad.mit.edu	37	12	11506632	11506633	+	In_Frame_Ins	INS	-	-	GGA	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	GGA	11506633	-	GGA	11506632	7	5	635	1	0	1	1	0	0	0	0	0	12452	1567	55	0	594	0	PRB1	12	11506632	In_Frame_Ins	INS	-	TCGA-G7-A4TM-01A-11D-A31X-10		11506632	122345263	26	37479			1	80		3	2	24	N	T_-	3.640497e-05
PRB1	5542	broad.mit.edu	37	12	11506653	11506653	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	-	11506653	T	-	11506653	7	5	635	1	0	1	0	1	0	0	0	0	12452	1664	58	0	615	0	PRB1	12	11506653	Frame_Shift_Del	DEL	T	TCGA-G7-A4TM-01A-11D-A31X-10	21	11506653	122345242	27	37480	480	2	1	80		3	2	24	N	T_-	3.640497e-05
PRB1	5542	broad.mit.edu	37	12	11506655	11506656	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	11506656	-	G	11506655	7	5	635	1	0	1	1	0	0	0	0	0	12452	1588	55	0	617	0	PRB1	12	11506655	Frame_Shift_Ins	INS	-	TCGA-G7-A4TM-01A-11D-A31X-10	2	11506655	122345240	28	37481	480	2	1	80		3	2	24	N	T_-	3.640497e-05
FAM60A	58516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	31448170	31448170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	A	31448170	G	A	31448170	3	1	635	1	0	0	0	0	1	0	0	0	5602	1290	45	2	455	2	FAM60A	12	31448170	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	19941515	31448170	102403725	29	37482											
METAP2	10988	broad.mit.edu	37	12	95867964	95867964	+	Silent	SNP	T	T	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	95867964	T	G	95867964	2	3	635	1	0	0	0	0	0	0	0	1	9494	1683	59	5		5	METAP2	12	95867964	Silent	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10	64419794	95867964	37983931	30	37483											
KCTD10	83892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	109889450	109889450	+	Silent	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	109889450	G	T	109889450	2	4	635	1	0	0	0	0	0	0	0	1	8104	1086	38	4		4	KCTD10	12	109889450	Silent	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	14021486	109889450	23962445	31	37484											
ELL3	80237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44067740	44067740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	44067740	C	T	44067740	3	4	635	1	0	0	0	0	1	0	0	0	5066	594	21	2	669	2	ELL3	15	44067740	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10		44067740	58463652	32	37485											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3860637	3860637	+	Silent	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	A	3860637	G	A	3860637	2	1	635	1	0	0	0	0	0	0	0	1	3863	1280	45	2		2	CREBBP	16	3860637	Silent	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		3860637	86494116	33	37486											
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	16180696	16180696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	A	16180696	G	A	16180696	3	1	635	1	0	0	0	0	1	0	0	0	49	1348	47	2	2378	2	ABCC1	16	16180696	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	12320059	16180696	74174057	34	37487											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24788620	24788620	+	Missense_Mutation	SNP	C	C	G	rs201630200	alternate_allele	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	24788620	C	G	24788620	3	3	635	1	0	0	0	0	1	0	0	0	16352	797	28	4	548	4	TNRC6A	16	24788620	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	8607924	24788620	65566133	35	37488											
COG4	25839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70548271	70548271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	70548271	A	T	70548271	3	4	635	1	0	0	0	0	1	0	0	0	3662	275	10	5	1922	5	COG4	16	70548271	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	45759651	70548271	19806482	36	37489											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26943696	26943696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	C	26943696	G	C	26943696	3	2	635	1	0	0	0	0	1	0	0	0	8161	1124	39	4	630	4	KIAA0100	17	26943696	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		26943696	54251514	37	37490											
HOXB4	3214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46654346	46654346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	46654346	G	T	46654346	3	4	635	1	0	0	0	0	1	0	0	0	7310	942	33	4	265	4	HOXB4	17	46654346	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	19710650	46654346	34540864	38	37491											
NOG	9241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	54672182	54672182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	54672182	C	G	54672182	3	3	635	1	0	0	0	0	1	0	0	0	10526	681	24	4	600	4	NOG	17	54672182	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	8017836	54672182	26523028	39	37492											
KIAA0195	9772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73487468	73487468	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	73487468	G	T	73487468	4	4	635	1	0	0	0	0	0	1	0	0	8167	1175	41	4	1364	4	KIAA0195	17	73487468	Nonsense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	18815286	73487468	7707742	40	37493											
SS18	6760	ucsc.edu	37	18	23658090	23658090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	23658090	G	T	23658090	3	4	635	1	0	0	0	0	1	0	0	0	15187	1000	35	4	1111	4	SS18	18	23658090	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		23658090	54419158	41	37494											
ACER1	125981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6307219	6307219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	6307219	G	T	6307219	3	4	635	1	0	0	0	0	1	0	0	0	138	1116	39	4	231	4	ACER1	19	6307219	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		6307219	52821764	42	37495											
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37038841	37038841	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	-	37038841	T	-	37038841	7	5	635	1	0	1	0	1	0	0	0	0	17982	1725	60	0	1076	0	ZNF529	19	37038841	Frame_Shift_Del	DEL	T	TCGA-G7-A4TM-01A-11D-A31X-10	30731622	37038841	22090142	43	37496											
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39226808	39226808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	39226808	C	T	39226808	3	4	635	1	0	0	0	0	1	0	0	0	2627	768	27	1	674	1	CAPN12	19	39226808	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	2187967	39226808	19902175	44	37497											
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42795850	42795850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	42795850	C	T	42795850	3	4	635	1	0	0	0	0	1	0	0	0	3426	623	22	2	2881	2	CIC	19	42795850	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	3569042	42795850	16333133	45	37498											
TMEM145	284339	broad.mit.edu	37	19	42819592	42819592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	T	42819592	G	T	42819592	3	4	635	1	0	0	0	0	1	0	0	0	16071	1246	43	4	676	4	TMEM145	19	42819592	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	23742	42819592	16309391	46	37499											
ZNF814	730051	bcgsc.ca	37	19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	58385788	A	G	58385788	3	3	635	1	0	0	0	0	1	0	0	0	18188	362	13	3	1601	3	ZNF814	19	58385788	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	15566196	58385788	743195	47	37500											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47587774	47587774	+	Silent	SNP	C	C	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	47587774	C	G	47587774	2	3	635	1	0	0	0	0	0	0	0	1	853	900	32	4		4	ARFGEF2	20	47587774	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10		47587774	15437746	48	37501											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22710734	22710734	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	C	22710734	A	C	22710734	3	2	635	1	0	0	0	0	1	0	0	0	10210	11	1	5	954	5	NCAM2	21	22710734	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10		22710734	25419161	49	37502											
RBM3	5935	broad.mit.edu	37	X	48434952	48434952	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	G	48434952	T	G	48434952	3	3	635	1	0	0	0	0	1	0	0	0	13142	1638	57	5	387	5	RBM3	23	48434952	Missense_Mutation	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10		48434952	106835608	50	37503											
ESPN	83715	ucsc.edu	37	1	6512054	6512054	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	6512054	C	T	6512054	2	4	636	1	0	0	0	0	0	0	0	1	5256	581	21	2		2	ESPN	1	6512054	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08		6512054	242738567	1	37504											
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100346675	100346675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	100346675	C	G	100346675	3	3	636	1	0	0	0	0	1	0	0	0	384	913	32	4	2066	4	AGL	1	100346675	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	93834621	100346675	148903946	2	37505											
TMEM79	84283	broad.mit.edu	37	1	156256105	156256105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	156256105	G	C	156256105	3	2	636	1	0	0	0	0	1	0	0	0	16215	1232	43	4	818	4	TMEM79	1	156256105	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	55909430	156256105	92994516	3	37506											
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230841797	230841797	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	230841797	A	T	230841797	3	4	636	1	0	0	0	0	1	0	0	0	399	72	3	5	463	5	AGT	1	230841797	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	74585692	230841797	18408824	4	37507											
PUM2	23369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20518349	20518349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	20518349	C	T	20518349	3	4	636	1	0	0	0	0	1	0	0	0	12839	681	24	2	3161	2	PUM2	2	20518349	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08		20518349	222681024	5	37508											
UNC50	25972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99232895	99232895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	99232895	A	T	99232895	3	4	636	1	0	0	0	0	1	0	0	0	17002	347	12	5	556	5	UNC50	2	99232895	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	78714546	99232895	143966478	6	37509											
TTN	7273	ucsc.edu;bcgsc.ca	37	2	179611166	179611166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	179611166	C	T	179611166	3	4	636	1	0	0	0	0	1	0	0	0	16747	536	19	1	94336	1	TTN	2	179611166	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	80378271	179611166	63588207	7	37510											
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197986231	197986231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	197986231	T	C	197986231	3	2	636	1	0	0	0	0	1	0	0	0	672	1696	59	3	2179	3	ANKRD44	2	197986231	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	18375065	197986231	45213142	8	37511											
FZD5	7855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	208632800	208632800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	208632800	A	G	208632800	3	3	636	1	0	0	0	0	1	0	0	0	6140	188	7	3	1097	3	FZD5	2	208632800	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	10646569	208632800	34566573	9	37512											
ZNF142	7701	ucsc.edu;bcgsc.ca	37	2	219503380	219503380	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	219503380	G	T	219503380	2	4	636	1	0	0	0	0	0	0	0	1	17743	1219	43	4		4	ZNF142	2	219503380	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	10870580	219503380	23695993	10	37513											
ZNF620	253639	bcgsc.ca	37	3	40553892	40553892	+	Splice_Site	SNP	G	G	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	40553892	G	C	40553892	5	2	636	1	0	0	0	0	0	0	1	0	18056	985	34	4	161	4	ZNF620	3	40553892	Splice_Site	SNP	G	TCGA-GL-6846-01A-11D-1961-08		40553892	157468538	11	37514											
FBXW12	285231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48436087	48436087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	48436087	A	G	48436087	3	3	636	1	0	0	0	0	1	0	0	0	5772	275	10	3	1433	3	FBXW12	3	48436087	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	7882195	48436087	149586343	12	37515											
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113721375	113721375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	113721375	C	A	113721375	3	1	636	1	0	0	0	0	1	0	0	0	8236	912	32	4	845	4	KIAA1407	3	113721375	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	65285288	113721375	84301055	13	37516											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121217327	121217327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	121217327	T	G	121217327	3	3	636	1	0	0	0	0	1	0	0	0	12215	1841	64	5	5694	5	POLQ	3	121217327	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	7495952	121217327	76805103	14	37517											
SEC62	7095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169706125	169706125	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	169706125	C	T	169706125	2	4	636	1	0	0	0	0	0	0	0	1	14017	581	21	2		2	SEC62	3	169706125	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	48488798	169706125	28316305	15	37518											
ACAP2	23527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195006526	195006526	+	Silent	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	195006526	T	C	195006526	2	2	636	1	0	0	0	0	0	0	0	1	119	1594	55	3		3	ACAP2	3	195006526	Silent	SNP	T	TCGA-GL-6846-01A-11D-1961-08	25300401	195006526	3015904	16	37519											
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	197687145	197687145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	197687145	G	A	197687145	3	1	636	1	0	0	0	0	1	0	0	0	8854	1261	44	2	55	2	LMLN	3	197687145	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	2680619	197687145	335285	17	37520											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	48598002	48598003	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	-	48598003	TT	-	48598002	7	5	636	1	0	1	0	1	0	0	0	0	6071	1493	52	0	8194	0	FRYL	4	48598002	Frame_Shift_Del	DEL	TT	TCGA-GL-6846-01A-11D-1961-08		48598002	142556274	18	37521											
CWH43	80157	broad.mit.edu	37	4	49040168	49040168	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	49040168	C	G	49040168	3	3	636	1	0	0	0	0	1	0	0	0	4075	912	32	4	1824	4	CWH43	4	49040168	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	442166	49040168	142114108	19	37522											
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	106157461	106157461	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	106157461	G	T	106157461	4	4	636	1	0	0	0	0	0	1	0	0	15782	1291	45	4	2364	4	TET2	4	106157461	Nonsense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	57117293	106157461	84996815	20	37523											
TRPC3	7222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122853525	122853525	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	122853525	G	A	122853525	2	1	636	1	0	0	0	0	0	0	0	1	16591	1194	42	2		2	TRPC3	4	122853525	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	16696064	122853525	68300751	21	37524											
CPE	1363	bcgsc.ca	37	4	166385584	166385584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	166385584	A	G	166385584	3	3	636	1	0	0	0	0	1	0	0	0	3801	304	11	3	356	3	CPE	4	166385584	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	43532059	166385584	24768692	22	37525											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187530418	187530418	+	Silent	SNP	T	T	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	187530418	T	A	187530418	2	1	636	1	0	0	0	0	0	0	0	1	5696	1512	53	5		5	FAT1	4	187530418	Silent	SNP	T	TCGA-GL-6846-01A-11D-1961-08	21144834	187530418	3623858	23	37526											
AGGF1	55109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	76344781	76344781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	76344781	C	A	76344781	3	1	636	1	0	0	0	0	1	0	0	0	382	565	20	4	1364	4	AGGF1	5	76344781	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08		76344781	104570479	24	37527											
NME5	8382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	137474383	137474383	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	-	137474383	C	-	137474383	7	5	636	1	0	1	0	1	0	0	0	0	10501	912	32	0	571	0	NME5	5	137474383	Frame_Shift_Del	DEL	C	TCGA-GL-6846-01A-11D-1961-08	61129602	137474383	43440877	25	37528	481	2									
NME5	8382	hgsc.bcm.edu	37	5	137474385	137474386	+	Nonsense_Mutation	DNP	CC	CC	AG	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	AG	137474386	CC	AG	137474385	4	1	636	1	0	0	0	0	0	1	0	0	10501	864	30	4	573	4	NME5	5	137474385	Nonsense_Mutation	DNP	CC	TCGA-GL-6846-01A-11D-1961-08	2	137474385	43440875	26	37529	481	2									
PCDH12	51294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141336615	141336615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	141336615	C	T	141336615	3	4	636	1	0	0	0	0	1	0	0	0	11517	768	27	1	2768	1	PCDH12	5	141336615	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	3862230	141336615	39578645	27	37530											
AGXT2L2	85007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	177642285	177642285	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	177642285	C	T	177642285	2	4	636	1	0	0	0	0	0	0	0	1	407	610	22	2		2	AGXT2L2	5	177642285	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	36305670	177642285	3272975	28	37531											
OR2Y1	134083	broad.mit.edu;bcgsc.ca	37	5	180166694	180166694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	180166694	C	T	180166694	3	4	636	1	0	0	0	0	1	0	0	0	11042	768	27	1	574	1	OR2Y1	5	180166694	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	2524409	180166694	748566	29	37532											
MRS2	57380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24418322	24418322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	24418322	A	T	24418322	3	4	636	1	0	0	0	0	1	0	0	0	9858	188	7	5	877	5	MRS2	6	24418322	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08		24418322	146696745	30	37533											
KCTD20	222658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36454734	36454734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	36454734	C	T	36454734	3	4	636	1	0	0	0	0	1	0	0	0	8115	536	19	1	1068	1	KCTD20	6	36454734	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	12036412	36454734	134660333	31	37534											
ULBP1	80329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150289835	150289835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	150289835	C	A	150289835	3	1	636	1	0	0	0	0	1	0	0	0	16984	739	26	4	184	4	ULBP1	6	150289835	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	113835101	150289835	20825232	32	37535											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168344092	168344092	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	168344092	T	A	168344092	3	1	636	1	0	0	0	0	1	0	0	0	9636	1522	53	5	3249	5	MLLT4	6	168344092	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	18054257	168344092	2770975	33	37536											
TNRC18	84629	hgsc.bcm.edu	37	7	5401235	5401235	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	5401235	T	G	5401235	3	3	636	1	0	0	0	0	1	0	0	0	16351	1580	55	5	4323	5	TNRC18	7	5401235	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08		5401235	153737428	34	37537											
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5568236	5568236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	5568236	T	C	5568236	3	2	636	1	0	0	0	0	1	0	0	0	193	1696	59	3	661	3	ACTB	7	5568236	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	167001	5568236	153570427	35	37538											
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6639834	6639834	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	6639834	T	G	6639834	3	3	636	1	0	0	0	0	1	0	0	0	2383	1609	56	5	969	5	C7orf26	7	6639834	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	1071598	6639834	152498829	36	37539											
ASB4	51666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95125264	95125264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	95125264	G	A	95125264	3	1	636	1	0	0	0	0	1	0	0	0	1025	1290	45	2	388	2	ASB4	7	95125264	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	88485430	95125264	64013399	37	37540											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107808822	107808822	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	107808822	G	A	107808822	2	1	636	1	0	0	0	0	0	0	0	1	10651	1310	46	2		2	NRCAM	7	107808822	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	12683558	107808822	51329841	38	37541											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	61654762	61654762	+	Silent	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	61654762	T	C	61654762	2	2	636	1	0	0	0	0	0	0	0	1	3332	1432	50	3		3	CHD7	8	61654762	Silent	SNP	T	TCGA-GL-6846-01A-11D-1961-08		61654762	84709260	39	37542											
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8460558	8460558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	8460558	G	T	8460558	3	4	636	1	0	0	0	0	1	0	0	0	12812	1261	44	4	2131	4	PTPRD	9	8460558	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		8460558	132752873	40	37543											
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	16552614	16552615	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	GAA	16552615	-	GAA	16552614	7	5	636	1	0	1	1	0	0	0	0	0	1475	1580	55	0	2728	0	BNC2	9	16552614	In_Frame_Ins	INS	-	TCGA-GL-6846-01A-11D-1961-08	8092056	16552614	124660817	41	37544											
GTF3C5	9328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135917679	135917680	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	AA	135917680	TT	AA	135917679	3	1	636	1	0	0	0	0	1	0	0	0	6883	1493	52	5	365	5	GTF3C5	9	135917679	Missense_Mutation	DNP	TT	TCGA-GL-6846-01A-11D-1961-08	119365065	135917679	5295752	42	37545											
CEL	1056	broad.mit.edu	37	9	135941956	135941956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	135941956	G	T	135941956	3	4	636	1	0	0	0	0	1	0	0	0	3211	1357	47	4	605	4	CEL	9	135941956	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	24277	135941956	5271475	43	37546											
LCN12	286256	broad.mit.edu	37	9	139846817	139846819	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	-	139846819	TGC	-	139846817	7	5	636	1	0	1	0	1	0	0	0	0	8689	1821	63	0	40	0	LCN12	9	139846817	In_Frame_Del	DEL	TGC	TCGA-GL-6846-01A-11D-1961-08	3904861	139846817	1366614	44	37547											
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140943670	140943670	+	Silent	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	140943670	T	C	140943670	2	2	636	1	0	0	0	0	0	0	0	1	2541	1606	56	3		3	CACNA1B	9	140943670	Silent	SNP	T	TCGA-GL-6846-01A-11D-1961-08	1096853	140943670	269761	45	37548											
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	375449	375449	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	375449	A	T	375449	3	4	636	1	0	0	0	0	1	0	0	0	4531	275	10	5	1025	5	DIP2C	10	375449	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08		375449	135159298	46	37549											
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	31812949	31812949	+	Missense_Mutation	SNP	G	G	T	rs35653460	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	31812949	G	T	31812949	3	4	636	1	0	0	0	0	1	0	0	0	17635	1116	39	4	2734	4	ZEB1	10	31812949	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	31437500	31812949	103721798	47	37550											
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105763115	105763115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	105763115	G	A	105763115	3	1	636	1	0	0	0	0	1	0	0	0	14761	1000	35	2	2213	2	SLK	10	105763115	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	73950166	105763115	29771632	48	37551											
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	121692658	121692658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	121692658	T	C	121692658	3	2	636	1	0	0	0	0	1	0	0	0	14006	1609	56	3	2966	3	SEC23IP	10	121692658	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	15929543	121692658	13842089	49	37552											
ADAM12	8038	broad.mit.edu;ucsc.edu	37	10	127789653	127789653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	127789653	G	A	127789653	3	1	636	1	0	0	0	0	1	0	0	0	236	1087	38	1	1989	1	ADAM12	10	127789653	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	6096995	127789653	7745094	50	37553											
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128788791	128788791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	128788791	C	G	128788791	3	3	636	1	0	0	0	0	1	0	0	0	4686	913	32	4	419	4	DOCK1	10	128788791	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	999138	128788791	6745956	51	37554											
OR56A1	120796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6048449	6048449	+	Silent	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	6048449	A	G	6048449	2	3	636	1	0	0	0	0	0	0	0	1	11140	349	13	3		3	OR56A1	11	6048449	Silent	SNP	A	TCGA-GL-6846-01A-11D-1961-08		6048449	128958067	52	37555											
ITGB7	3695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53586547	53586547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	53586547	T	C	53586547	3	2	636	1	0	0	0	0	1	0	0	0	7907	1580	55	3	538	3	ITGB7	12	53586547	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08		53586547	80265348	53	37556											
TDG	6996	hgsc.bcm.edu	37	12	104378526	104378526	+	Splice_Site	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	104378526	G	T	104378526	5	4	636	1	0	0	0	0	0	0	1	0	15737	985	34	4	822	4	TDG	12	104378526	Splice_Site	SNP	G	TCGA-GL-6846-01A-11D-1961-08	50791979	104378526	29473369	54	37557											
MTIF3	219402	ucsc.edu	37	13	28014392	28014392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	28014392	C	T	28014392	3	4	636	1	0	0	0	0	1	0	0	0	9942	855	30	2	654	2	MTIF3	13	28014392	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08		28014392	87155486	55	37558											
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	44975261	44975261	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	44975261	C	T	44975261	2	4	636	1	0	0	0	0	0	0	0	1	6073	639	23	1		1	FSCB	14	44975261	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08		44975261	62374279	56	37559											
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	90429932	90429932	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	90429932	G	A	90429932	2	1	636	1	0	0	0	0	0	0	0	1	15740	1335	47	2		2	TDP1	14	90429932	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	45454671	90429932	16919608	57	37560											
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	71341787	71341787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	71341787	G	A	71341787	3	1	636	1	0	0	0	0	1	0	0	0	9013	943	33	2	1959	2	LRRC49	15	71341787	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		71341787	31189605	58	37561	482	2									
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	71341790	71341790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	71341790	G	A	71341790	3	1	636	1	0	0	0	0	1	0	0	0	9013	942	33	2	1962	2	LRRC49	15	71341790	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	3	71341790	31189602	59	37562	482	2									
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2814253	2814253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	2814253	G	A	2814253	3	1	636	1	0	0	0	0	1	0	0	0	15181	1261	44	2	3762	2	SRRM2	16	2814253	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		2814253	87540500	60	37563											
SRCAP	10847	broad.mit.edu	37	16	30735227	30735227	+	Silent	SNP	A	A	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	30735227	A	C	30735227	2	2	636	1	0	0	0	0	0	0	0	1	15147	146	6	5		5	SRCAP	16	30735227	Silent	SNP	A	TCGA-GL-6846-01A-11D-1961-08	27920974	30735227	59619526	61	37564											
C16orf86	388284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67702137	67702137	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	67702137	C	G	67702137	4	3	636	1	0	0	0	0	0	1	0	0	1841	547	19	4	602	4	C16orf86	16	67702137	Nonsense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	36966910	67702137	22652616	62	37565											
CPNE7	27132	broad.mit.edu	37	16	89662976	89662976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	89662976	C	A	89662976	3	1	636	1	0	0	0	0	1	0	0	0	3819	623	22	4	1915	4	CPNE7	16	89662976	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	21960839	89662976	691777	63	37566											
SCARF1	8578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1538231	1538231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	1538231	T	C	1538231	3	2	636	1	0	0	0	0	1	0	0	0	13896	1588	55	3	182	3	SCARF1	17	1538231	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08		1538231	79656979	64	37567											
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3788622	3788622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	3788622	C	G	3788622	3	3	636	1	0	0	0	0	1	0	0	0	2608	695	24	4	1339	4	CAMKK1	17	3788622	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	2250391	3788622	77406588	65	37568											
ZNF232	7775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5009512	5009512	+	Silent	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	5009512	A	G	5009512	2	3	636	1	0	0	0	0	0	0	0	1	17797	456	16	3		3	ZNF232	17	5009512	Silent	SNP	A	TCGA-GL-6846-01A-11D-1961-08	1220890	5009512	76185698	66	37569											
POLDIP2	26073	broad.mit.edu	37	17	26684350	26684351	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	AT	26684351	GC	AT	26684350	3	1	636	1	0	0	0	0	1	0	0	0	12201	1087	38	1	1025	1	POLDIP2	17	26684350	Missense_Mutation	DNP	GC	TCGA-GL-6846-01A-11D-1961-08	21674838	26684350	54510860	67	37570											
SLC13A2	9058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26818545	26818545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	26818545	G	A	26818545	3	1	636	1	0	0	0	0	1	0	0	0	14405	971	34	2	830	2	SLC13A2	17	26818545	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	134195	26818545	54376665	68	37571											
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26919846	26919846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	26919846	T	C	26919846	3	2	636	1	0	0	0	0	1	0	0	0	14994	1580	55	3	3253	3	SPAG5	17	26919846	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	101301	26919846	54275364	69	37572											
FAM20A	54757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	66538845	66538846	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	-	66538846	AA	-	66538845	7	5	636	1	0	1	0	1	0	0	0	0	5541	127	5	0	731	0	FAM20A	17	66538845	Frame_Shift_Del	DEL	AA	TCGA-GL-6846-01A-11D-1961-08	39618999	66538845	14656365	70	37573											
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73831766	73831766	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	73831766	G	T	73831766	2	4	636	1	0	0	0	0	0	0	0	1	16999	1277	45	4		4	UNC13D	17	73831766	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	7292921	73831766	7363444	71	37574											
CTAGE1	64693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	19997258	19997258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	19997258	G	A	19997258	3	1	636	1	0	0	0	0	1	0	0	0	3994	1144	40	1	1724	1	CTAGE1	18	19997258	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		19997258	58079990	72	37575											
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	8527467	T	G	8527467	5	3	636	1	0	0	0	0	0	0	1	0	7278	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-GL-6846-01A-11D-1961-08		8527467	50601516	73	37576											
ZNF20	7568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12246707	12246707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	12246707	A	C	12246707	3	2	636	1	0	0	0	0	1	0	0	0	17773	246	9	5	1594	5	ZNF20	19	12246707	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	3719240	12246707	46882276	74	37577											
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35617247	35617247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	35617247	A	G	35617247	3	3	636	1	0	0	0	0	1	0	0	0	8761	275	10	3	395	3	LGI4	19	35617247	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	23370540	35617247	23511736	75	37578											
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40520846	40520846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	40520846	G	A	40520846	3	1	636	1	0	0	0	0	1	0	0	0	17990	1175	41	2	1687	2	ZNF546	19	40520846	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	4903599	40520846	18608137	76	37579											
EGLN2	112398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41306603	41306603	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	41306603	T	A	41306603	4	1	636	1	0	0	0	0	0	1	0	0	4971	1673	58	5	128	5	EGLN2	19	41306603	Nonsense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	785757	41306603	17822380	77	37580											
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	19665982	19665982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	19665982	C	T	19665982	3	4	636	1	0	0	0	0	1	0	0	0	14480	652	23	1	1347	1	SLC24A3	20	19665982	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08		19665982	43359538	78	37581											
PCIF1	63935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44574469	44574469	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	44574469	A	C	44574469	3	2	636	1	0	0	0	0	1	0	0	0	11587	217	8	5	1326	5	PCIF1	20	44574469	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	24908487	44574469	18451051	79	37582											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47641990	47641990	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	47641990	C	T	47641990	2	4	636	1	0	0	0	0	0	0	0	1	853	547	19	1		1	ARFGEF2	20	47641990	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	3067521	47641990	15383530	80	37583											
SNAI1	6615	ucsc.edu	37	20	48600833	48600833	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	48600833	C	T	48600833	2	4	636	1	0	0	0	0	0	0	0	1	14839	776	27	1		1	SNAI1	20	48600833	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	958843	48600833	14424687	81	37584											
LAMA5	3911	ucsc.edu	37	20	60891785	60891785	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	60891785	C	T	60891785	2	4	636	1	0	0	0	0	0	0	0	1	8616	581	21	2		2	LAMA5	20	60891785	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	12290952	60891785	2133735	82	37585											
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45978008	45978008	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	45978008	G	A	45978008	2	1	636	1	0	0	0	0	0	0	0	1	8517	1161	41	2		2	KRTAP10-3	21	45978008	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08		45978008	2151887	83	37586											
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24175838	24175839	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	24175839	-	T	24175838	7	5	636	1	0	1	1	0	0	0	0	0	14787	912	32	0	1096	0	SMARCB1	22	24175838	Frame_Shift_Ins	INS	-	TCGA-GL-6846-01A-11D-1961-08		24175838	27128728	84	37587											
GSTT1	2952	broad.mit.edu;bcgsc.ca	37	22	24376512	24376512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	T	24376512	C	T	24376512	3	4	636	1	0	0	0	0	1	0	0	0	6852	835	29	2	92	2	GSTT1	22	24376512	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	200674	24376512	26928054	85	37588											
SEPT3	55964	hgsc.bcm.edu	37	22	42373072	42373072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	G	42373072	T	G	42373072	3	3	636	1	0	0	0	0	1	0	0	0	14078	1667	58	5	6	5	SEPT3	22	42373072	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	17996560	42373072	8931494	86	37589											
CASK	8573	hgsc.bcm.edu	37	X	41448782	41448782	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	C	41448782	G	C	41448782	3	2	636	1	0	0	0	0	1	0	0	0	2667	1386	48	4	1621	4	CASK	23	41448782	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		41448782	113821778	87	37590											
MAGT1	84061	ucsc.edu;bcgsc.ca	37	X	77150838	77150838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	A	77150838	C	A	77150838	3	1	636	1	0	0	0	0	1	0	0	0	9203	536	19	4	977	4	MAGT1	23	77150838	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	35702056	77150838	78119722	88	37591											
NOC2L	26155	bcgsc.ca	37	1	887486	887486	+	Missense_Mutation	SNP	C	C	G	rs144707752		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	887486	C	G	887486	3	3	637	1	0	0	0	0	1	0	0	0	10520	478	17	4	1060	4	NOC2L	1	887486	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		887486	248363135	1	37592											
MEGF6	1953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3511980	3511980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	3511980	A	G	3511980	3	3	637	1	0	0	0	0	1	0	0	0	9469	391	14	3	4467	3	MEGF6	1	3511980	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	2624494	3511980	245738641	2	37593											
TCEB3	6924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24080614	24080614	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	24080614	A	C	24080614	3	2	637	1	0	0	0	0	1	0	0	0	15693	246	9	5	1662	5	TCEB3	1	24080614	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	20568634	24080614	225170007	3	37594											
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31479871	31479871	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	31479871	G	C	31479871	3	2	637	1	0	0	0	0	1	0	0	0	12838	1299	45	4	3131	4	PUM1	1	31479871	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	7399257	31479871	217770750	4	37595											
SLC2A1	6513	hgsc.bcm.edu	37	1	43393458	43393458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	43393458	A	G	43393458	3	3	637	1	0	0	0	0	1	0	0	0	14551	420	15	3	390	3	SLC2A1	1	43393458	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	11913587	43393458	205857163	5	37596											
CDC20	991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43828621	43828621	+	Splice_Site	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	43828621	G	A	43828621	5	1	637	1	0	0	0	0	0	0	1	0	3061	1014	35	2	1359	2	CDC20	1	43828621	Splice_Site	SNP	G	TCGA-GL-7773-01A-11D-2136-08	435163	43828621	205422000	6	37597											
STIL	6491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47717027	47717027	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	-	47717027	T	-	47717027	7	5	637	1	0	1	0	1	0	0	0	0	15294	1567	55	0	222	0	STIL	1	47717027	Frame_Shift_Del	DEL	T	TCGA-GL-7773-01A-11D-2136-08	3888406	47717027	201533594	7	37598											
TTLL7	79739	hgsc.bcm.edu	37	1	84383373	84383373	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	84383373	C	G	84383373	3	3	637	1	0	0	0	0	1	0	0	0	16744	869	30	4	1194	4	TTLL7	1	84383373	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	36666346	84383373	164867248	8	37599											
DBT	1629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100680458	100680458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	100680458	G	T	100680458	3	4	637	1	0	0	0	0	1	0	0	0	4260	1029	36	4	614	4	DBT	1	100680458	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	16297085	100680458	148570163	9	37600											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109807126	109807126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	109807126	C	A	109807126	3	1	637	1	0	0	0	0	1	0	0	0	3224	738	26	4	5382	4	CELSR2	1	109807126	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	9126668	109807126	139443495	10	37601											
CHIA	27159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111862962	111862962	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	111862962	C	T	111862962	2	4	637	1	0	0	0	0	0	0	0	1	3344	535	19	1		1	CHIA	1	111862962	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2055836	111862962	137387659	11	37602											
RSBN1	54665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114308975	114308975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	114308975	G	C	114308975	3	2	637	1	0	0	0	0	1	0	0	0	13709	1000	35	4	376	4	RSBN1	1	114308975	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	2446013	114308975	134941646	12	37603											
NBPF10	100132406	broad.mit.edu	37	1	145323659	145323659	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	-	145323659	A	-	145323659	7	5	637	1	0	1	0	1	0	0	0	0	10200	363	13	0	3602	0	NBPF10	1	145323659	Frame_Shift_Del	DEL	A	TCGA-GL-7773-01A-11D-2136-08	31014684	145323659	103926962	13	37604											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152276023	152276023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	152276023	C	G	152276023	3	3	637	1	0	0	0	0	1	0	0	0	5929	681	24	4	850	4	FLG	1	152276023	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	6952364	152276023	96974598	14	37605											
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	164781319	164781320	+	Frame_Shift_Ins	INS	-	-	GTATA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	GTATA	164781320	-	GTATA	164781319	7	5	637	1	0	1	1	0	0	0	0	0	11499	1567	55	0	952	0	PBX1	1	164781319	Frame_Shift_Ins	INS	-	TCGA-GL-7773-01A-11D-2136-08	12505296	164781319	84469302	15	37606											
MRPS14	63931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	174987712	174987712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	174987712	T	C	174987712	3	2	637	1	0	0	0	0	1	0	0	0	9831	1449	50	3	348	3	MRPS14	1	174987712	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	10206393	174987712	74262909	16	37607											
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175355248	175355248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	175355248	G	C	175355248	3	2	637	1	0	0	0	0	1	0	0	0	16350	1000	35	4	2443	4	TNR	1	175355248	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	367536	175355248	73895373	17	37608											
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182856426	182856426	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	182856426	G	C	182856426	3	2	637	1	0	0	0	0	1	0	0	0	4518	1000	35	4	3776	4	DHX9	1	182856426	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	7501178	182856426	66394195	18	37609											
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	192128419	192128419	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	192128419	C	T	192128419	2	4	637	1	0	0	0	0	0	0	0	1	13313	581	21	2		2	RGS18	1	192128419	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	9271993	192128419	57122202	19	37610											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232649814	232649814	+	Silent	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	232649814	A	T	232649814	2	4	637	1	0	0	0	0	0	0	0	1	14343	126	5	5		5	SIPA1L2	1	232649814	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	40521395	232649814	16600807	20	37611											
LGALS8	3964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236702385	236702385	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	236702385	T	A	236702385	3	1	637	1	0	0	0	0	1	0	0	0	8754	1783	62	5	351	5	LGALS8	1	236702385	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	4052571	236702385	12548236	21	37612											
RASGRP3	25780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33768640	33768640	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	33768640	G	C	33768640	3	2	637	1	0	0	0	0	1	0	0	0	13089	1029	36	4	1382	4	RASGRP3	2	33768640	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		33768640	209430733	22	37613											
STRN	6801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37129786	37129786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	37129786	T	G	37129786	3	3	637	1	0	0	0	0	1	0	0	0	15341	1838	64	5	1798	5	STRN	2	37129786	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	3361146	37129786	206069587	23	37614											
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97428005	97428005	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	97428005	C	A	97428005	4	1	637	1	0	0	0	0	0	1	0	0	3617	547	19	4	1271	4	CNNM4	2	97428005	Nonsense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	60298219	97428005	145771368	24	37615											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179599140	179599140	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	179599140	A	G	179599140	2	3	637	1	0	0	0	0	0	0	0	1	16747	359	13	3		3	TTN	2	179599140	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	82171135	179599140	63600233	25	37616											
NEUROD1	4760	broad.mit.edu	37	2	182543429	182543429	+	Silent	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	182543429	C	A	182543429	2	1	637	1	0	0	0	0	0	0	0	1	10355	813	29	4		4	NEUROD1	2	182543429	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2944289	182543429	60655944	26	37617											
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197889959	197889959	+	Silent	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	197889959	T	C	197889959	2	2	637	1	0	0	0	0	0	0	0	1	672	1490	52	3		3	ANKRD44	2	197889959	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	15346530	197889959	45309414	27	37618											
ALS2CR8	79800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203848266	203848266	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	203848266	A	G	203848266	2	3	637	1	0	0	0	0	0	0	0	1	555	69	3	3		3	ALS2CR8	2	203848266	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	5958307	203848266	39351107	28	37619											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	407694	407695	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	407695	-	T	407694	7	5	637	1	0	1	1	0	0	0	0	0	3351	98	4	0	1697	0	CHL1	3	407694	Frame_Shift_Ins	INS	-	TCGA-GL-7773-01A-11D-2136-08		407694	197614736	29	37620											
SLC22A13	9390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38316610	38316610	+	Silent	SNP	C	C	A	rs200811458	alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	38316610	C	A	38316610	2	1	637	1	0	0	0	0	0	0	0	1	14457	639	23	4		4	SLC22A13	3	38316610	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	37908916	38316610	159705820	30	37621											
CAMP	820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48266893	48266893	+	Silent	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	48266893	T	C	48266893	2	2	637	1	0	0	0	0	0	0	0	1	2612	1799	63	3		3	CAMP	3	48266893	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	9950283	48266893	149755537	31	37622											
IQCF2	389123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	51897303	51897303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	51897303	T	C	51897303	3	2	637	1	0	0	0	0	1	0	0	0	7815	1580	55	3	422	3	IQCF2	3	51897303	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	3630410	51897303	146125127	32	37623											
LRTM1	57408	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	54952818	54952823	+	In_Frame_Del	DEL	CAGGAA	CAGGAA	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	CAGGAA	CAGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	-	54952823	CAGGAA	-	54952818	7	5	637	1	0	1	0	1	0	0	0	0	9051	710	25	0	335	0	LRTM1	3	54952818	In_Frame_Del	DEL	CAGGAA	TCGA-GL-7773-01A-11D-2136-08	3055515	54952818	143069612	33	37624											
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56779418	56779418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	56779418	T	G	56779418	3	3	637	1	0	0	0	0	1	0	0	0	904	1850	64	5	911	5	ARHGEF3	3	56779418	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	1826600	56779418	141243012	34	37625											
C3orf14	57415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	62317065	62317065	+	Silent	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	62317065	T	A	62317065	2	1	637	1	0	0	0	0	0	0	0	1	2210	1828	64	5		5	C3orf14	3	62317065	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	5537647	62317065	135705365	35	37626											
CPOX	1371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	98309567	98309567	+	Silent	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	98309567	A	T	98309567	2	4	637	1	0	0	0	0	0	0	0	1	3823	407	15	5		5	CPOX	3	98309567	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	35992502	98309567	99712863	36	37627											
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	114057877	114057878	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	-	114057878	AT	-	114057877	7	5	637	1	0	1	0	1	0	0	0	0	17541	217	8	0	28	0	ZBTB20	3	114057877	Frame_Shift_Del	DEL	AT	TCGA-GL-7773-01A-11D-2136-08	15748310	114057877	83964553	37	37628											
MCM2	4171	bcgsc.ca	37	3	127340566	127340566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	127340566	A	G	127340566	3	3	637	1	0	0	0	0	1	0	0	0	9393	246	9	3	2727	3	MCM2	3	127340566	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	13282689	127340566	70681864	38	37629											
PLSCR2	57047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	146167110	146167110	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	146167110	C	T	146167110	2	4	637	1	0	0	0	0	0	0	0	1	12117	796	28	2		2	PLSCR2	3	146167110	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	18826544	146167110	51855320	39	37630											
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	182789038	182789038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	182789038	T	C	182789038	3	2	637	1	0	0	0	0	1	0	0	0	9381	1406	49	3	1634	3	MCCC1	3	182789038	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	36621928	182789038	15233392	40	37631											
IDUA	3425	hgsc.bcm.edu	37	4	980971	980971	+	Missense_Mutation	SNP	T	T	G	rs10794537		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	980971	T	G	980971	3	3	637	1	0	0	0	0	1	0	0	0	7511	1461	51	5	101	5	IDUA	4	980971	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08		980971	190173305	41	37632											
CPZ	8532	hgsc.bcm.edu	37	4	8621334	8621334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	8621334	T	C	8621334	3	2	637	1	0	0	0	0	1	0	0	0	3841	1551	54	3	1991	3	CPZ	4	8621334	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	7640363	8621334	182532942	42	37633											
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76529105	76529105	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	76529105	T	A	76529105	4	1	637	1	0	0	0	0	0	1	0	0	3156	1763	61	5	814	5	CDKL2	4	76529105	Nonsense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	67907771	76529105	114625171	43	37634											
USO1	8615	broad.mit.edu	37	4	76721515	76721515	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	76721515	A	T	76721515	3	4	637	1	0	0	0	0	1	0	0	0	17051	11	1	5	1474	5	USO1	4	76721515	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	192410	76721515	114432761	44	37635											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123202841	123202841	+	Missense_Mutation	SNP	G	G	C	rs115036597	by1000genomes;alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	123202841	G	C	123202841	3	2	637	1	0	0	0	0	1	0	0	0	8215	1377	48	4	9147	4	KIAA1109	4	123202841	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	46481326	123202841	67951435	45	37636											
FNIP2	57600	hgsc.bcm.edu	37	4	159816929	159816929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	159816929	C	G	159816929	3	3	637	1	0	0	0	0	1	0	0	0	5983	479	17	4	3240	4	FNIP2	4	159816929	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	36614088	159816929	31337347	46	37637											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7878202	7878202	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	7878202	G	T	7878202	4	4	637	1	0	0	0	0	0	1	0	0	9968	943	33	4	646	4	MTRR	5	7878202	Nonsense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		7878202	173037058	47	37638											
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	98192299	98192299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	98192299	G	A	98192299	3	1	637	1	0	0	0	0	1	0	0	0	3325	1377	48	2	218	2	CHD1	5	98192299	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	90314097	98192299	82722961	48	37639											
PCDHGB2	56103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140741729	140741729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	140741729	G	A	140741729	3	1	637	1	0	0	0	0	1	0	0	0	11570	971	34	2	2029	2	PCDHGB2	5	140741729	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	42549430	140741729	40173531	49	37640											
DIAPH1	1729	broad.mit.edu	37	5	140953588	140953589	+	In_Frame_Ins	INS	-	-	GAT	rs35249023	alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	GAT	140953589	-	GAT	140953588	7	5	637	1	0	1	1	0	0	0	0	0	4520	1000	35	0	2041	0	DIAPH1	5	140953588	In_Frame_Ins	INS	-	TCGA-GL-7773-01A-11D-2136-08	211859	140953588	39961672	50	37641											
F12	2161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176829362	176829363	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	-	176829363	GC	-	176829362	7	5	637	1	0	1	0	1	0	0	0	0	5341	1306	46	0	72	0	F12	5	176829362	Frame_Shift_Del	DEL	GC	TCGA-GL-7773-01A-11D-2136-08	35875774	176829362	4085898	51	37642											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180030377	180030377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	180030377	C	T	180030377	3	4	637	1	0	0	0	0	1	0	0	0	5951	594	21	2	188	2	FLT4	5	180030377	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	3201015	180030377	884883	52	37643											
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	20548882	20548882	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	20548882	T	G	20548882	3	3	637	1	0	0	0	0	1	0	0	0	3154	1783	62	5	238	5	CDKAL1	6	20548882	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08		20548882	150566185	53	37644											
HLA-G	3135	ucsc.edu	37	6	29797253	29797253	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	29797253	G	A	29797253	2	1	637	1	0	0	0	0	0	0	0	1	7219	1252	44	2		2	HLA-G	6	29797253	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	9248371	29797253	141317814	54	37645											
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33156195	33156195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	33156195	C	A	33156195	3	1	637	1	0	0	0	0	1	0	0	0	3670	855	30	4	4987	4	COL11A2	6	33156195	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	3358942	33156195	137958872	55	37646											
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	71003975	71003975	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	71003975	G	A	71003975	2	1	637	1	0	0	0	0	0	0	0	1	3709	1020	36	2		2	COL9A1	6	71003975	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	37847780	71003975	100111092	56	37647											
FAM46A	55603	hgsc.bcm.edu	37	6	82461790	82461790	+	Silent	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	82461790	T	G	82461790	2	3	637	1	0	0	0	0	0	0	0	1	5572	1509	53	5		5	FAM46A	6	82461790	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	11457815	82461790	88653277	57	37648											
BACH2	60468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90660214	90660214	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	90660214	G	A	90660214	2	1	637	1	0	0	0	0	0	0	0	1	1284	987	35	2		2	BACH2	6	90660214	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	8198424	90660214	80454853	58	37649											
PREP	5550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	105776878	105776878	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	105776878	T	A	105776878	3	1	637	1	0	0	0	0	1	0	0	0	12484	1812	63	5	1121	5	PREP	6	105776878	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	15116664	105776878	65338189	59	37650											
CLIP2	7461	broad.mit.edu;bcgsc.ca	37	7	73790824	73790824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	73790824	G	T	73790824	3	4	637	1	0	0	0	0	1	0	0	0	3535	1232	43	4	2127	4	CLIP2	7	73790824	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		73790824	85347839	60	37651											
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	83631283	83631283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	83631283	C	A	83631283	3	1	637	1	0	0	0	0	1	0	0	0	14037	826	29	4	899	4	SEMA3A	7	83631283	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	9840459	83631283	75507380	61	37652											
SLC25A13	10165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95818645	95818645	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	95818645	C	T	95818645	2	4	637	1	0	0	0	0	0	0	0	1	14488	680	24	2		2	SLC25A13	7	95818645	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	12187362	95818645	63320018	62	37653											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10466983	10466983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	10466983	C	A	10466983	3	1	637	1	0	0	0	0	1	0	0	0	13546	884	31	4	2581	4	RP1L1	8	10466983	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		10466983	135897039	63	37654											
CA13	377677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	86180770	86180770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	86180770	T	G	86180770	3	3	637	1	0	0	0	0	1	0	0	0	2516	1406	49	5	605	5	CA13	8	86180770	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	75713787	86180770	60183252	64	37655											
EFR3A	23167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	132982859	132982859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	132982859	G	T	132982859	3	4	637	1	0	0	0	0	1	0	0	0	4960	933	33	4	1166	4	EFR3A	8	132982859	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	46802089	132982859	13381163	65	37656											
KIAA0020	9933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	2810352	2810352	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	2810352	C	G	2810352	3	3	637	1	0	0	0	0	1	0	0	0	8159	623	22	4	243	4	KIAA0020	9	2810352	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		2810352	138403079	66	37657											
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33798069	33798069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	33798069	T	C	33798069	3	2	637	1	0	0	0	0	1	0	0	0	12632	1580	55	3	668	3	PRSS3	9	33798069	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	30987717	33798069	107415362	67	37658											
SEMA4D	10507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	92007357	92007357	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	92007357	A	T	92007357	4	4	637	1	0	0	0	0	0	1	0	0	14047	224	8	5	2591	5	SEMA4D	9	92007357	Nonsense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	58209288	92007357	49206074	68	37659											
STX17	55014	broad.mit.edu;bcgsc.ca	37	9	102730748	102730748	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	102730748	G	A	102730748	2	1	637	1	0	0	0	0	0	0	0	1	15352	1335	47	2		2	STX17	9	102730748	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	10723391	102730748	38482683	69	37660											
ABL1	25	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	133759486	133759486	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	133759486	G	A	133759486	2	1	637	1	0	0	0	0	0	0	0	1	92	1281	45	2		2	ABL1	9	133759486	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	31028738	133759486	7453945	70	37661											
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134019822	134019822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	134019822	T	A	134019822	3	1	637	1	0	0	0	0	1	0	0	0	10769	1609	56	5	1496	5	NUP214	9	134019822	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	260336	134019822	7193609	71	37662											
PFKFB3	5209	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	6258717	6258717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	6258717	C	A	6258717	3	1	637	1	0	0	0	0	1	0	0	0	11769	826	29	4	453	4	PFKFB3	10	6258717	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		6258717	129276030	72	37663	483	2									
PFKFB3	5209	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	6258718	6258719	+	Missense_Mutation	DNP	AT	AT	TA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	TA	6258719	AT	TA	6258718	3	4	637	1	0	0	0	0	1	0	0	0	11769	217	8	5	454	5	PFKFB3	10	6258718	Missense_Mutation	DNP	AT	TCGA-GL-7773-01A-11D-2136-08	1	6258718	129276029	73	37664	483	2									
PRPF18	8559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13653627	13653627	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	13653627	T	A	13653627	3	1	637	1	0	0	0	0	1	0	0	0	12573	1667	58	5	545	5	PRPF18	10	13653627	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	7394909	13653627	121881120	74	37665											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16941136	16941136	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	16941136	A	G	16941136	2	3	637	1	0	0	0	0	0	0	0	1	4053	291	11	3		3	CUBN	10	16941136	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	3287509	16941136	118593611	75	37666											
FBXW4	6468	hgsc.bcm.edu	37	10	103454329	103454329	+	Silent	SNP	G	G	C	rs61761937		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	103454329	G	C	103454329	2	2	637	1	0	0	0	0	0	0	0	1	5774	1103	39	4		4	FBXW4	10	103454329	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	86513193	103454329	32080418	76	37667											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115365937	115365938	+	Missense_Mutation	DNP	GT	GT	TA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	TA	115365938	GT	TA	115365937	3	4	637	1	0	0	0	0	1	0	0	0	10645	1159	40	4	1425	4	NRAP	10	115365937	Missense_Mutation	DNP	GT	TCGA-GL-7773-01A-11D-2136-08	11911608	115365937	20168810	77	37668	484	2									
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115365939	115365939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	115365939	C	A	115365939	3	1	637	1	0	0	0	0	1	0	0	0	10645	826	29	4	1427	4	NRAP	10	115365939	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2	115365939	20168808	78	37669	484	2									
KRTAP5-4	387267	bcgsc.ca	37	11	1643279	1643279	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	1643279	C	T	1643279	2	4	637	1	0	0	0	0	0	0	0	1	8570	610	22	2		2	KRTAP5-4	11	1643279	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08		1643279	133363237	79	37670											
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58978386	58978386	+	Silent	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	58978386	A	T	58978386	2	4	637	1	0	0	0	0	0	0	0	1	9730	262	10	5		5	MPEG1	11	58978386	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	57335107	58978386	76028130	80	37671											
FLRT1	23769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63885635	63885635	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	63885635	G	A	63885635	2	1	637	1	0	0	0	0	0	0	0	1	5945	1020	36	2		2	FLRT1	11	63885635	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	4907249	63885635	71120881	81	37672											
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66617172	66617172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	66617172	G	C	66617172	3	2	637	1	0	0	0	0	1	0	0	0	11504	1020	36	4	491	4	PC	11	66617172	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	2731537	66617172	68389344	82	37673											
FUT4	2526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	94278647	94278649	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	-	94278649	TTT	-	94278647	7	5	637	1	0	1	0	1	0	0	0	0	6113	1609	56	0	1350	0	FUT4	11	94278647	In_Frame_Del	DEL	TTT	TCGA-GL-7773-01A-11D-2136-08	27661475	94278647	40727869	83	37674											
DRD2	1813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113288847	113288847	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	113288847	C	T	113288847	2	4	637	1	0	0	0	0	0	0	0	1	4759	564	20	2		2	DRD2	11	113288847	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	19010200	113288847	21717669	84	37675											
HINFP	25988	broad.mit.edu;bcgsc.ca	37	11	119001504	119001504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	119001504	G	T	119001504	3	4	637	1	0	0	0	0	1	0	0	0	7117	1087	38	4	257	4	HINFP	11	119001504	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	5712657	119001504	16005012	85	37676											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133816079	133816079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	133816079	C	T	133816079	3	4	637	1	0	0	0	0	1	0	0	0	7613	536	19	1	3982	1	IGSF9B	11	133816079	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	14814575	133816079	1190437	86	37677											
CLEC1B	51266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10145838	10145838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	-	10145838	A	-	10145838	7	5	637	1	0	1	0	1	0	0	0	0	3508	243	9	0	99	0	CLEC1B	12	10145838	Frame_Shift_Del	DEL	A	TCGA-GL-7773-01A-11D-2136-08		10145838	123706057	87	37678											
PRB3	5544	broad.mit.edu	37	12	11420475	11420475	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	11420475	A	G	11420475	2	3	637	1	0	0	0	0	0	0	0	1	12454	291	11	3		3	PRB3	12	11420475	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	1274637	11420475	122431420	88	37679											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12318144	12318144	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	12318144	T	A	12318144	3	1	637	1	0	0	0	0	1	0	0	0	8969	1406	49	5	3274	5	LRP6	12	12318144	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	897669	12318144	121533751	89	37680											
FAR2	55711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	29469910	29469910	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	29469910	T	A	29469910	4	1	637	1	0	0	0	0	0	1	0	0	5682	1471	51	5	1122	5	FAR2	12	29469910	Nonsense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	17151766	29469910	104381985	90	37681											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40758851	40758851	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	40758851	A	G	40758851	2	3	637	1	0	0	0	0	0	0	0	1	9040	434	15	3		3	LRRK2	12	40758851	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	11288941	40758851	93093044	91	37682											
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	45803213	45803213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	45803213	G	T	45803213	3	4	637	1	0	0	0	0	1	0	0	0	701	1174	41	4	2036	4	ANO6	12	45803213	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	5044362	45803213	88048682	92	37683											
KRT4	3851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53203234	53203234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	53203234	A	T	53203234	3	4	637	1	0	0	0	0	1	0	0	0	8484	159	6	5	819	5	KRT4	12	53203234	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	7400021	53203234	80648661	93	37684											
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	112036797	C	T	112036797	2	4	637	1	0	0	0	0	0	0	0	1	1211	796	28	2		2	ATXN2	12	112036797	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	58833563	112036797	21815098	94	37685											
ZC3H13	23091	hgsc.bcm.edu	37	13	46549817	46549817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	46549817	T	C	46549817	3	2	637	1	0	0	0	0	1	0	0	0	17577	1551	54	3	2649	3	ZC3H13	13	46549817	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08		46549817	68620061	95	37686											
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52548876	52548876	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	52548876	G	A	52548876	2	1	637	1	0	0	0	0	0	0	0	1	1191	1335	47	2		2	ATP7B	13	52548876	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	5999059	52548876	62621002	96	37687											
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	115022697	115022697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	115022697	G	T	115022697	3	4	637	1	0	0	0	0	1	0	0	0	3060	933	33	4	1292	4	CDC16	13	115022697	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	62473821	115022697	147181	97	37688											
PSME2	5721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24612672	24612672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	24612672	G	T	24612672	3	4	637	1	0	0	0	0	1	0	0	0	12717	1310	46	4	57	4	PSME2	14	24612672	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		24612672	82736868	98	37689											
TINF2	26277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24709984	24709984	+	Silent	SNP	G	G	C	rs201135568	alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	24709984	G	C	24709984	2	2	637	1	0	0	0	0	0	0	0	1	15935	1335	47	4		4	TINF2	14	24709984	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	97312	24709984	82639556	99	37690											
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65008125	65008125	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	65008125	G	A	65008125	2	1	637	1	0	0	0	0	0	0	0	1	7418	1335	47	2		2	HSPA2	14	65008125	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	40298141	65008125	42341415	100	37691											
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65008173	65008173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	65008173	C	A	65008173	3	1	637	1	0	0	0	0	1	0	0	0	7418	506	18	4	608	4	HSPA2	14	65008173	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	48	65008173	42341367	101	37692											
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70991146	70991146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	70991146	T	C	70991146	3	2	637	1	0	0	0	0	1	0	0	0	242	1638	57	3	1855	3	ADAM20	14	70991146	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	5982973	70991146	36358394	102	37693											
NPC2	10577	broad.mit.edu;bcgsc.ca	37	14	74959964	74959964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	74959964	G	A	74959964	3	1	637	1	0	0	0	0	1	0	0	0	10579	1319	46	2	461	2	NPC2	14	74959964	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	3968818	74959964	32389576	103	37694											
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	79423648	79423648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	79423648	G	A	79423648	3	1	637	1	0	0	0	0	1	0	0	0	10674	1116	39	1	1242	1	NRXN3	14	79423648	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	4463684	79423648	27925892	104	37695											
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	101012903	101012903	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	101012903	G	A	101012903	2	1	637	1	0	0	0	0	0	0	0	1	1397	1020	36	2		2	BEGAIN	14	101012903	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	21589255	101012903	6336637	105	37696											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105408067	105408067	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	-	105408067	T	-	105408067	7	5	637	1	0	1	0	1	0	0	0	0	415	1667	58	0	3670	0	AHNAK2	14	105408067	Frame_Shift_Del	DEL	T	TCGA-GL-7773-01A-11D-2136-08	4395164	105408067	1941473	106	37697											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28431846	28431846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	28431846	T	A	28431846	3	1	637	1	0	0	0	0	1	0	0	0	7065	1435	50	5	5954	5	HERC2	15	28431846	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08		28431846	74099546	107	37698											
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35274327	35274327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	35274327	T	C	35274327	3	2	637	1	0	0	0	0	1	0	0	0	18155	1763	61	3	770	3	ZNF770	15	35274327	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	6842481	35274327	67257065	108	37699											
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40758294	40758294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	40758294	T	C	40758294	3	2	637	1	0	0	0	0	1	0	0	0	1297	1609	56	3	2330	3	BAHD1	15	40758294	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	5483967	40758294	61773098	109	37700											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51790750	51790750	+	Silent	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	51790750	T	G	51790750	2	3	637	1	0	0	0	0	0	0	0	1	4597	1594	55	5		5	DMXL2	15	51790750	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	11032456	51790750	50740642	110	37701											
MYO5C	55930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52498142	52498142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	52498142	G	T	52498142	3	4	637	1	0	0	0	0	1	0	0	0	10087	1174	41	4	840	4	MYO5C	15	52498142	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	707392	52498142	50033250	111	37702											
C15orf60	283677	hgsc.bcm.edu	37	15	73843452	73843452	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	73843452	A	G	73843452	2	3	637	1	0	0	0	0	0	0	0	1	1810	69	3	3		3	C15orf60	15	73843452	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	21345310	73843452	28687940	112	37703											
PML	5371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	74327953	74327953	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	74327953	G	A	74327953	2	1	637	1	0	0	0	0	0	0	0	1	12142	1223	43	2		2	PML	15	74327953	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	484501	74327953	28203439	113	37704											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	338194	338194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	338194	C	A	338194	3	1	637	1	0	0	0	0	1	0	0	0	1236	680	24	4	75	4	AXIN1	16	338194	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		338194	90016559	114	37705											
GLYR1	84656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4864623	4864623	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	4864623	G	C	4864623	3	2	637	1	0	0	0	0	1	0	0	0	6490	1203	42	4	753	4	GLYR1	16	4864623	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	4526429	4864623	85490130	115	37706											
NTAN1	123803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15133833	15133833	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	15133833	C	G	15133833	3	3	637	1	0	0	0	0	1	0	0	0	10702	855	30	4	312	4	NTAN1	16	15133833	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	10269210	15133833	75220920	116	37707											
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28880661	28880661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	28880661	C	A	28880661	3	1	637	1	0	0	0	0	1	0	0	0	14240	506	18	4	1280	4	SH2B1	16	28880661	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	13746828	28880661	61474092	117	37708											
RABEP2	79874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28925762	28925762	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	28925762	T	A	28925762	3	1	637	1	0	0	0	0	1	0	0	0	12975	1667	58	5	1056	5	RABEP2	16	28925762	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	45101	28925762	61428991	118	37709											
RNF40	9810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30775599	30775599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	30775599	T	C	30775599	3	2	637	1	0	0	0	0	1	0	0	0	13506	1580	55	3	556	3	RNF40	16	30775599	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	1849837	30775599	59579154	119	37710											
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31340556	31340556	+	Missense_Mutation	SNP	G	G	T	rs199790913		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	31340556	G	T	31340556	3	4	637	1	0	0	0	0	1	0	0	0	7894	1261	44	4	2897	4	ITGAM	16	31340556	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	564957	31340556	59014197	120	37711											
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	47684490	47684490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	47684490	G	T	47684490	3	4	637	1	0	0	0	0	1	0	0	0	11852	1319	46	4	1966	4	PHKB	16	47684490	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	16343934	47684490	42670263	121	37712											
DHX33	56919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5353590	5353590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	5353590	G	T	5353590	3	4	637	1	0	0	0	0	1	0	0	0	4508	1174	41	4	474	4	DHX33	17	5353590	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		5353590	75841620	122	37713											
FLII	2314	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18150014	18150014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	18150014	C	T	18150014	3	4	637	1	0	0	0	0	1	0	0	0	5932	710	25	2	896	2	FLII	17	18150014	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	12796424	18150014	63045196	123	37714											
C17orf53	78995	hgsc.bcm.edu	37	17	42228328	42228328	+	Splice_Site	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	42228328	G	C	42228328	5	2	637	1	0	0	0	0	0	0	1	0	1864	985	34	4	1238	4	C17orf53	17	42228328	Splice_Site	SNP	G	TCGA-GL-7773-01A-11D-2136-08	24078314	42228328	38966882	124	37715											
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46423341	46423341	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	-	46423341	T	-	46423341	7	5	637	1	0	1	0	1	0	0	0	0	14368	1435	50	0	909	0	SKAP1	17	46423341	Frame_Shift_Del	DEL	T	TCGA-GL-7773-01A-11D-2136-08	4195013	46423341	34771869	125	37716											
HOXB7	3217	broad.mit.edu	37	17	46688052	46688052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	46688052	C	T	46688052	3	4	637	1	0	0	0	0	1	0	0	0	7313	652	23	1	432	1	HOXB7	17	46688052	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	264711	46688052	34507158	126	37717											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65134124	65134125	+	Missense_Mutation	DNP	TG	TG	GA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	GA	65134125	TG	GA	65134124	3	3	637	1	0	0	0	0	1	0	0	0	7056	1812	63	5	3000	5	HELZ	17	65134124	Missense_Mutation	DNP	TG	TCGA-GL-7773-01A-11D-2136-08	18446072	65134124	16061086	127	37718											
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	71197359	71197359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	71197359	A	G	71197359	3	3	637	1	0	0	0	0	1	0	0	0	3659	217	8	3	1419	3	COG1	17	71197359	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	6063235	71197359	9997851	128	37719											
QRICH2	84074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74277019	74277019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	74277019	C	A	74277019	3	1	637	1	0	0	0	0	1	0	0	0	12893	623	22	4	1254	4	QRICH2	17	74277019	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	3079660	74277019	6918191	129	37720											
ZNF358	140467	hgsc.bcm.edu;broad.mit.edu	37	19	7585576	7585576	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	7585576	G	C	7585576	3	2	637	1	0	0	0	0	1	0	0	0	17879	942	33	4	1450	4	ZNF358	19	7585576	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		7585576	51543407	130	37721											
FARSA	2193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13039366	13039366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	13039366	C	A	13039366	3	1	637	1	0	0	0	0	1	0	0	0	5686	912	32	4	850	4	FARSA	19	13039366	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	5453790	13039366	46089617	131	37722											
CILP2	148113	hgsc.bcm.edu	37	19	19656391	19656391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	19656391	A	G	19656391	3	3	637	1	0	0	0	0	1	0	0	0	3432	449	16	3	3067	3	CILP2	19	19656391	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	6617025	19656391	39472592	132	37723											
ZNF599	148103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35250173	35250173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	35250173	T	A	35250173	3	1	637	1	0	0	0	0	1	0	0	0	18041	1490	52	5	237	5	ZNF599	19	35250173	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	15593782	35250173	23878810	133	37724	485	2									
ZNF599	148103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35250175	35250175	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	35250175	C	A	35250175	4	1	637	1	0	0	0	0	0	1	0	0	18041	922	32	4	239	4	ZNF599	19	35250175	Nonsense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2	35250175	23878808	134	37725	485	2									
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56370219	56370219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	56370219	A	G	56370219	3	3	637	1	0	0	0	0	1	0	0	0	10486	101	4	3	1466	3	NLRP4	19	56370219	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	21120044	56370219	2758764	135	37726											
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50407897	50407897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	50407897	G	C	50407897	3	2	637	1	0	0	0	0	1	0	0	0	13826	1136	40	4	2048	4	SALL4	20	50407897	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		50407897	12617623	136	37727											
RGL4	266747	hgsc.bcm.edu;bcgsc.ca	37	22	24034222	24034222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	A	24034222	G	A	24034222	3	1	637	1	0	0	0	0	1	0	0	0	13292	1000	35	2	7	2	RGL4	22	24034222	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		24034222	27270344	137	37728											
UQCR10	29796	hgsc.bcm.edu	37	22	30163538	30163539	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	AA	30163539	GT	AA	30163538	3	1	637	1	0	0	0	0	1	0	0	0	17028	1275	44	2	153	2	UQCR10	22	30163538	Missense_Mutation	DNP	GT	TCGA-GL-7773-01A-11D-2136-08	6129316	30163538	21141028	138	37729											
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38328888	38328888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	38328888	A	G	38328888	3	3	637	1	0	0	0	0	1	0	0	0	9580	217	8	3	2273	3	MICALL1	22	38328888	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	8165350	38328888	12975678	139	37730											
MKL1	57591	hgsc.bcm.edu;bcgsc.ca	37	22	40816901	40816901	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	40816901	C	G	40816901	3	3	637	1	0	0	0	0	1	0	0	0	9608	796	28	4	1988	4	MKL1	22	40816901	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2488013	40816901	10487665	140	37731											
ARMCX1	51309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	100808732	100808733	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	100808733	-	T	100808732	7	5	637	1	0	1	1	0	0	0	0	0	959	564	20	0	821	0	ARMCX1	23	100808732	Frame_Shift_Ins	INS	-	TCGA-GL-7773-01A-11D-2136-08		100808732	54461828	141	37732											
PLS3	5358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	114883786	114883786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	C	114883786	G	C	114883786	3	2	637	1	0	0	0	0	1	0	0	0	12115	1029	36	4	1856	4	PLS3	23	114883786	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	14075054	114883786	40386774	142	37733											
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117526750	117526750	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	117526750	T	G	117526750	3	3	637	1	0	0	0	0	1	0	0	0	17308	1432	50	5	356	5	WDR44	23	117526750	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	2642964	117526750	37743810	143	37734											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122801090	122801090	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	G	122801090	A	G	122801090	2	3	637	1	0	0	0	0	0	0	0	1	15877	98	4	3		3	THOC2	23	122801090	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	5274340	122801090	32469470	144	37735											
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152826336	152826336	+	Silent	SNP	C	C	T	rs181539158	by1000genomes;alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	T	152826336	C	T	152826336	2	4	637	1	0	0	0	0	0	0	0	1	1141	883	31	1		1	ATP2B3	23	152826336	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	30025246	152826336	2444224	145	37736											
PRAMEF2	65122	hgsc.bcm.edu	37	1	12919095	12919095	+	Silent	SNP	A	A	C	rs116865587	byfrequency;alternate_allele	TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	12919095	A	C	12919095	2	2	638	1	0	0	0	0	0	0	0	1	12445	204	8	5		5	PRAMEF2	1	12919095	Silent	SNP	A	TCGA-GL-7966-01A-11D-2201-08		12919095	236331526	1	37737											
HFM1	164045	hgsc.bcm.edu	37	1	91844675	91844675	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	91844675	G	C	91844675	3	2	638	1	0	0	0	0	1	0	0	0	7090	1377	48	4	3328	4	HFM1	1	91844675	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	78925580	91844675	157405946	2	37738											
EVI5	7813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	93160869	93160869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	93160869	C	G	93160869	3	3	638	1	0	0	0	0	1	0	0	0	5291	835	29	4	1441	4	EVI5	1	93160869	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08	1316194	93160869	156089752	3	37739											
ASH1L	55870	broad.mit.edu	37	1	155451419	155451419	+	Silent	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	155451419	T	C	155451419	2	2	638	1	0	0	0	0	0	0	0	1	1041	1567	55	3		3	ASH1L	1	155451419	Silent	SNP	T	TCGA-GL-7966-01A-11D-2201-08	62290550	155451419	93799202	4	37740											
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158517503	158517503	+	Silent	SNP	A	A	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	158517503	A	T	158517503	2	4	638	1	0	0	0	0	0	0	0	1	11220	10	1	5		5	OR6Y1	1	158517503	Silent	SNP	A	TCGA-GL-7966-01A-11D-2201-08	3066084	158517503	90733118	5	37741											
NUAK2	81788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205274389	205274389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	205274389	T	C	205274389	3	2	638	1	0	0	0	0	1	0	0	0	10720	1667	58	3	1133	3	NUAK2	1	205274389	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	46756886	205274389	43976232	6	37742											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216138718	216138718	+	Missense_Mutation	SNP	C	C	T	rs201386640		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	216138718	C	T	216138718	3	4	638	1	0	0	0	0	1	0	0	0	17048	768	27	1	8691	1	USH2A	1	216138718	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08	10864329	216138718	33111903	7	37743											
FH	2271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	241663812	241663812	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	241663812	G	A	241663812	4	1	638	1	0	0	0	0	0	1	0	0	5882	1357	47	2	225	2	FH	1	241663812	Nonsense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	25525094	241663812	7586809	8	37744											
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	10059757	10059763	+	Frame_Shift_Del	DEL	GCACACT	GCACACT	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	GCACACT	GCACACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	-	10059763	GCACACT	-	10059757	7	5	638	1	0	1	0	1	0	0	0	0	15532	971	34	0	1427	0	TAF1B	2	10059757	Frame_Shift_Del	DEL	GCACACT	TCGA-GL-7966-01A-11D-2201-08		10059757	233139616	9	37745											
BIRC6	57448	hgsc.bcm.edu	37	2	32639897	32639897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	32639897	T	C	32639897	3	2	638	1	0	0	0	0	1	0	0	0	1438	1551	54	3	1576	3	BIRC6	2	32639897	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	22580140	32639897	210559476	10	37746											
EIF2AK3	9451	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	88890366	88890366	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	88890366	C	T	88890366	2	4	638	1	0	0	0	0	0	0	0	1	5000	912	32	2		2	EIF2AK3	2	88890366	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	56250469	88890366	154309007	11	37747											
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166201262	166201262	+	Silent	SNP	C	C	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	166201262	C	G	166201262	2	3	638	1	0	0	0	0	0	0	0	1	13929	842	30	4		4	SCN2A	2	166201262	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	77310896	166201262	76998111	12	37748											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168105759	168105759	+	Silent	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	168105759	G	A	168105759	2	1	638	1	0	0	0	0	0	0	0	1	17442	1161	41	2		2	XIRP2	2	168105759	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08	1904497	168105759	75093614	13	37749											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179598482	179598482	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	179598482	C	A	179598482	4	1	638	1	0	0	0	0	0	1	0	0	16747	661	23	4	89135	4	TTN	2	179598482	Nonsense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08	11492723	179598482	63600891	14	37750											
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179986590	179986590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	179986590	G	A	179986590	3	1	638	1	0	0	0	0	1	0	0	0	14140	1174	41	2	765	2	SESTD1	2	179986590	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	388108	179986590	63212783	15	37751											
ICA1L	130026	broad.mit.edu	37	2	203693626	203693626	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	203693626	T	G	203693626	3	3	638	1	0	0	0	0	1	0	0	0	7485	1841	64	5	1403	5	ICA1L	2	203693626	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	23707036	203693626	39505747	16	37752											
ABCB6	10058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220074990	220074990	+	Silent	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	220074990	G	A	220074990	2	1	638	1	0	0	0	0	0	0	0	1	45	1164	41	2		2	ABCB6	2	220074990	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08	16381364	220074990	23124383	17	37753											
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	32766999	32766999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	32766999	G	A	32766999	3	1	638	1	0	0	0	0	1	0	0	0	3620	971	34	2	954	2	CNOT10	3	32766999	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		32766999	165255431	18	37754											
RAD54L2	23132	hgsc.bcm.edu;bcgsc.ca	37	3	51664392	51664392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	51664392	A	G	51664392	3	3	638	1	0	0	0	0	1	0	0	0	13007	72	3	3	600	3	RAD54L2	3	51664392	Missense_Mutation	SNP	A	TCGA-GL-7966-01A-11D-2201-08	18897393	51664392	146358038	19	37755											
CHIC2	26511	hgsc.bcm.edu	37	4	54876297	54876297	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	54876297	A	C	54876297	3	2	638	1	0	0	0	0	1	0	0	0	3346	101	4	5	38	5	CHIC2	4	54876297	Missense_Mutation	SNP	A	TCGA-GL-7966-01A-11D-2201-08		54876297	136277979	20	37756											
FHDC1	85462	bcgsc.ca	37	4	153886112	153886112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	153886112	T	C	153886112	3	2	638	1	0	0	0	0	1	0	0	0	5883	1725	60	3	1115	3	FHDC1	4	153886112	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	99009815	153886112	37268164	21	37757											
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	9629374	9629374	+	Silent	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	9629374	G	A	9629374	2	1	638	1	0	0	0	0	0	0	0	1	15577	1281	45	2		2	TAS2R1	5	9629374	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08		9629374	171285886	22	37758											
HCN1	348980	ucsc.edu	37	5	45461992	45461992	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	45461992	G	A	45461992	4	1	638	1	0	0	0	0	0	1	0	0	7003	1328	46	2	1729	2	HCN1	5	45461992	Nonsense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	35832618	45461992	135453268	23	37759											
SHROOM1	134549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132161119	132161119	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	132161119	C	T	132161119	2	4	638	1	0	0	0	0	0	0	0	1	14306	639	23	1		1	SHROOM1	5	132161119	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	86699127	132161119	48754141	24	37760											
PCDHGA2	56113	broad.mit.edu	37	5	140720783	140720783	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	140720783	T	G	140720783	3	3	638	1	0	0	0	0	1	0	0	0	11561	1841	64	5	2247	5	PCDHGA2	5	140720783	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	8559664	140720783	40194477	25	37761											
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	45390482	C	G	45390482	3	3	638	1	0	0	0	0	1	0	0	0	13761	711	25	4	233	4	RUNX2	6	45390482	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08		45390482	125724585	26	37762											
MTHFD1L	25902	hgsc.bcm.edu	37	6	151358132	151358132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	151358132	A	G	151358132	3	3	638	1	0	0	0	0	1	0	0	0	9935	72	3	3	2828	3	MTHFD1L	6	151358132	Missense_Mutation	SNP	A	TCGA-GL-7966-01A-11D-2201-08	105967650	151358132	19756935	27	37763											
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142561393	142561393	+	Silent	SNP	A	A	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	142561393	A	T	142561393	2	4	638	1	0	0	0	0	0	0	0	1	5180	436	16	5		5	EPHB6	7	142561393	Silent	SNP	A	TCGA-GL-7966-01A-11D-2201-08		142561393	16577270	28	37764											
COL22A1	169044	broad.mit.edu	37	8	139767734	139767734	+	Silent	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	139767734	T	C	139767734	2	2	638	1	0	0	0	0	0	0	0	1	3683	1606	56	3		3	COL22A1	8	139767734	Silent	SNP	T	TCGA-GL-7966-01A-11D-2201-08		139767734	6596288	29	37765											
KIAA1984	84960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139694856	139694856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	139694856	G	A	139694856	3	1	638	1	0	0	0	0	1	0	0	0	8273	1175	41	2	472	2	KIAA1984	9	139694856	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		139694856	1518575	30	37766											
C11orf80	79703	hgsc.bcm.edu;broad.mit.edu	37	11	66555634	66555634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	66555634	T	C	66555634	3	2	638	1	0	0	0	0	1	0	0	0	1666	1406	49	3	545	3	C11orf80	11	66555634	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08		66555634	68450882	31	37767											
KLHL35	283212	broad.mit.edu	37	11	75140917	75140917	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	-	75140917	A	-	75140917	7	5	638	1	0	1	0	1	0	0	0	0	8395	188	7	0	1017	0	KLHL35	11	75140917	Frame_Shift_Del	DEL	A	TCGA-GL-7966-01A-11D-2201-08	8585283	75140917	59865599	32	37768											
PUS3	83480	broad.mit.edu	37	11	125766029	125766029	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	-	125766029	T	-	125766029	7	5	638	1	0	1	0	1	0	0	0	0	12845	1725	60	0	1306	0	PUS3	11	125766029	Frame_Shift_Del	DEL	T	TCGA-GL-7966-01A-11D-2201-08	50625112	125766029	9240487	33	37769											
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	134241359	134241359	+	Silent	SNP	A	A	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	134241359	A	G	134241359	2	3	638	1	0	0	0	0	0	0	0	1	6436	117	5	3		3	GLB1L2	11	134241359	Silent	SNP	A	TCGA-GL-7966-01A-11D-2201-08	8475330	134241359	765157	34	37770											
IPO8	10526	hgsc.bcm.edu;broad.mit.edu	37	12	30787080	30787080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	30787080	T	C	30787080	3	2	638	1	0	0	0	0	1	0	0	0	7805	1580	55	3	289	3	IPO8	12	30787080	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08		30787080	103064815	35	37771											
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132395297	132395297	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	132395297	C	T	132395297	2	4	638	1	0	0	0	0	0	0	0	1	16987	639	23	1		1	ULK1	12	132395297	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	101608217	132395297	1456598	36	37772											
DOCK9	23348	hgsc.bcm.edu	37	13	99536093	99536093	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	99536093	G	C	99536093	3	2	638	1	0	0	0	0	1	0	0	0	4696	1290	45	4	3964	4	DOCK9	13	99536093	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		99536093	15633785	37	37773											
JKAMP	51528	hgsc.bcm.edu	37	14	59965598	59965598	+	Silent	SNP	G	G	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	59965598	G	C	59965598	2	2	638	1	0	0	0	0	0	0	0	1	7956	1306	46	4		4	JKAMP	14	59965598	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08		59965598	47383942	38	37774											
SNURF	8926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	25207297	25207297	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	25207297	C	T	25207297	2	4	638	1	0	0	0	0	0	0	0	1	14891	535	19	1		1	SNURF	15	25207297	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08		25207297	77324095	39	37775											
B2M	567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	-	45003782	CT	-	45003781	7	5	638	1	0	1	0	1	0	0	0	0	1244	565	20	0	39	0	B2M	15	45003781	Frame_Shift_Del	DEL	CT	TCGA-GL-7966-01A-11D-2201-08	19796484	45003781	57527611	40	37776											
B2M	567	broad.mit.edu	37	15	45007645	45007646	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	45007646	-	A	45007645	7	5	638	1	0	1	1	0	0	0	0	0	1244	838	29	0	98	0	B2M	15	45007645	Frame_Shift_Ins	INS	-	TCGA-GL-7966-01A-11D-2201-08	3864	45007645	57523747	41	37777											
UACA	55075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	70987423	70987423	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	70987423	C	T	70987423	2	4	638	1	0	0	0	0	0	0	0	1	16836	680	24	2		2	UACA	15	70987423	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	25979778	70987423	31543969	42	37778											
HCN4	10021	hgsc.bcm.edu	37	15	73660576	73660576	+	Silent	SNP	G	G	C	rs201193660		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	73660576	G	C	73660576	2	2	638	1	0	0	0	0	0	0	0	1	7006	929	33	4		4	HCN4	15	73660576	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08	2673153	73660576	28870816	43	37779											
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6531560	6531560	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	6531560	G	A	6531560	4	1	638	1	0	0	0	0	0	1	0	0	8198	1299	45	2	2376	2	KIAA0753	17	6531560	Nonsense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		6531560	74663650	44	37780											
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	16340169	16340169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	16340169	A	G	16340169	3	3	638	1	0	0	0	0	1	0	0	0	16608	43	2	3	2315	3	TRPV2	17	16340169	Missense_Mutation	SNP	A	TCGA-GL-7966-01A-11D-2201-08	9808609	16340169	64855041	45	37781											
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	37809843	37809854	+	In_Frame_Del	DEL	CCTCCCTGGGCT	CCTCCCTGGGCT	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	CCTCCCTGGGCT	CCTCCCTGGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	-	37809854	CCTCCCTGGGCT	-	37809843	7	5	638	1	0	1	0	1	0	0	0	0	15269	739	26	0	61	0	STARD3	17	37809843	In_Frame_Del	DEL	CCTCCCTGGGCT	TCGA-GL-7966-01A-11D-2201-08	21469674	37809843	43385367	46	37782											
TTC25	83538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40101470	40101470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	C	40101470	T	C	40101470	3	2	638	1	0	0	0	0	1	0	0	0	16705	1493	52	3	1169	3	TTC25	17	40101470	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	2291627	40101470	41093740	47	37783											
MYCBPAP	84073	ucsc.edu	37	17	48608775	48608775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	48608775	C	T	48608775	3	4	638	1	0	0	0	0	1	0	0	0	10026	768	27	1	3015	1	MYCBPAP	17	48608775	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08	8507305	48608775	32586435	48	37784											
ENPP7	339221	broad.mit.edu	37	17	77710872	77710872	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	77710872	C	T	77710872	2	4	638	1	0	0	0	0	0	0	0	1	5137	535	19	1		1	ENPP7	17	77710872	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	29102097	77710872	3484338	49	37785											
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	40853736	40853736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	G	40853736	C	G	40853736	3	3	638	1	0	0	0	0	1	0	0	0	15488	826	29	4	631	4	SYT4	18	40853736	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08		40853736	37223512	50	37786											
SERPINB10	5273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61585305	61585305	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	61585305	T	A	61585305	3	1	638	1	0	0	0	0	1	0	0	0	14110	1406	49	5	351	5	SERPINB10	18	61585305	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	20731569	61585305	16491943	51	37787											
ZSWIM4	65249	broad.mit.edu	37	19	13941242	13941242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	13941242	C	T	13941242	3	4	638	1	0	0	0	0	1	0	0	0	18255	893	31	1	2398	1	ZSWIM4	19	13941242	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08		13941242	45187741	52	37788											
NKPD1	284353	broad.mit.edu	37	19	45656458	45656458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	45656458	G	A	45656458	3	1	638	1	0	0	0	0	1	0	0	0	10453	1086	38	1	1265	1	NKPD1	19	45656458	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	31715216	45656458	13472525	53	37789											
MYBPC2	4606	broad.mit.edu	37	19	50939282	50939282	+	Silent	SNP	G	G	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	50939282	G	T	50939282	2	4	638	1	0	0	0	0	0	0	0	1	10019	1335	47	4		4	MYBPC2	19	50939282	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08	5282824	50939282	8189701	54	37790											
TCFL5	10732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61490803	61490806	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	-	61490806	AGAA	-	61490803	7	5	638	1	0	1	0	1	0	0	0	0	15711	188	7	0	611	0	TCFL5	20	61490803	Frame_Shift_Del	DEL	AGAA	TCGA-GL-7966-01A-11D-2201-08		61490803	1534717	55	37791											
LSS	4047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47615617	47615617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	47615617	G	A	47615617	3	1	638	1	0	0	0	0	1	0	0	0	9072	1203	42	2	424	2	LSS	21	47615617	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		47615617	514278	56	37792											
PRMT2	3275	bcgsc.ca	37	21	48083430	48083430	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	A	48083430	G	A	48083430	4	1	638	1	0	0	0	0	0	1	0	0	12547	1241	43	2	1267	2	PRMT2	21	48083430	Nonsense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	467813	48083430	46465	57	37793											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30061052	30061052	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	-	30061052	T	-	30061052	7	5	638	1	0	1	0	1	0	0	0	0	10364	1594	55	0	918	0	NF2	22	30061052	Frame_Shift_Del	DEL	T	TCGA-GL-7966-01A-11D-2201-08		30061052	21243514	58	37794											
APOL3	80833	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	36556768	36556768	+	Missense_Mutation	SNP	G	G	T	rs11089781	byfrequency;alternate_allele	TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	36556768	G	T	36556768	3	4	638	1	0	0	0	0	1	0	0	0	807	1386	48	4	1048	4	APOL3	22	36556768	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	6495716	36556768	14747798	59	37795											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	37098492	37098492	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	-	37098492	T	-	37098492	7	5	638	1	0	1	0	1	0	0	0	0	2559	1609	56	0	857	0	CACNG2	22	37098492	Frame_Shift_Del	DEL	T	TCGA-GL-7966-01A-11D-2201-08	541724	37098492	14206074	60	37796											
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	152823737	152823737	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	T	152823737	C	T	152823737	2	4	638	1	0	0	0	0	0	0	0	1	1141	668	24	2		2	ATP2B3	23	152823737	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08		152823737	2446823	61	37797											
PRAMEF17	391004	hgsc.bcm.edu	37	1	13718601	13718601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	13718601	C	T	13718601	3	4	639	1	0	0	0	0	1	0	0	0	12442	536	19	1	1074	1	PRAMEF17	1	13718601	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08		13718601	235532020	1	37798											
FAM46B	115572	hgsc.bcm.edu	37	1	27332864	27332864	+	Silent	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	27332864	G	A	27332864	2	1	639	1	0	0	0	0	0	0	0	1	5573	1195	42	2		2	FAM46B	1	27332864	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	13614263	27332864	221917757	2	37799											
IPO13	9670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44423086	44423086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	44423086	C	A	44423086	3	1	639	1	0	0	0	0	1	0	0	0	7801	681	24	4	1431	4	IPO13	1	44423086	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	17090222	44423086	204827535	3	37800											
CSDE1	7812	hgsc.bcm.edu	37	1	115280131	115280131	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	115280131	A	G	115280131	2	3	639	1	0	0	0	0	0	0	0	1	3931	262	10	3		3	CSDE1	1	115280131	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08	70857045	115280131	133970490	4	37801											
C1orf112	55732	hgsc.bcm.edu	37	1	169775219	169775219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	169775219	T	C	169775219	3	2	639	1	0	0	0	0	1	0	0	0	1987	1725	60	3	571	3	C1orf112	1	169775219	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	54495088	169775219	79475402	5	37802											
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211749303	211749308	+	In_Frame_Del	DEL	ATCTAA	ATCTAA	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	ATCTAA	ATCTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	211749308	ATCTAA	-	211749303	7	5	639	1	0	1	0	1	0	0	0	0	14566	330	12	0	576	0	SLC30A1	1	211749303	In_Frame_Del	DEL	ATCTAA	TCGA-GL-8500-01A-11D-2396-08	41974084	211749303	37501318	6	37803											
RRP15	51018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	218480910	218480910	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	218480910	T	G	218480910	3	3	639	1	0	0	0	0	1	0	0	0	13700	1821	63	5	655	5	RRP15	1	218480910	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	6731607	218480910	30769711	7	37804											
GALNT2	2590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230385000	230385000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	230385000	C	A	230385000	3	1	639	1	0	0	0	0	1	0	0	0	6220	506	18	4	922	4	GALNT2	1	230385000	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	11904090	230385000	18865621	8	37805											
RGS7	6000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	241094065	241094065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	241094065	G	C	241094065	3	2	639	1	0	0	0	0	1	0	0	0	13323	1232	43	4	1178	4	RGS7	1	241094065	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	10709065	241094065	8156556	9	37806											
PSME4	23198	broad.mit.edu;ucsc.edu	37	2	54176408	54176408	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	54176408	A	G	54176408	2	3	639	1	0	0	0	0	0	0	0	1	12719	1	1	3		3	PSME4	2	54176408	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08		54176408	189022965	10	37807											
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	175624262	175624262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	175624262	A	T	175624262	3	4	639	1	0	0	0	0	1	0	0	0	3383	275	10	5	1341	5	CHRNA1	2	175624262	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	121447854	175624262	67575111	11	37808											
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190428363	190428363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	190428363	A	T	190428363	3	4	639	1	0	0	0	0	1	0	0	0	14641	159	6	5	374	5	SLC40A1	2	190428363	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	14804101	190428363	52771010	12	37809											
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197187250	197187250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	197187250	C	T	197187250	3	4	639	1	0	0	0	0	1	0	0	0	7050	623	22	2	3974	2	HECW2	2	197187250	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	6758887	197187250	46012123	13	37810											
ABCB6	10058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220075814	220075814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	220075814	A	G	220075814	3	3	639	1	0	0	0	0	1	0	0	0	45	304	11	3	563	3	ABCB6	2	220075814	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	22888564	220075814	23123559	14	37811											
SEC13	6396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	10342967	10342967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	10342967	T	C	10342967	3	2	639	1	0	0	0	0	1	0	0	0	13993	1551	54	3	25	3	SEC13	3	10342967	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08		10342967	187679463	15	37812											
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37042512	37042512	+	Missense_Mutation	SNP	G	G	A	rs63750133	alternate_allele	TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	37042512	G	A	37042512	3	1	639	1	0	0	0	0	1	0	0	0	9624	971	34	2	284	2	MLH1	3	37042512	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	26699545	37042512	160979918	16	37813											
XYLB	9942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38404484	38404484	+	Silent	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	38404484	C	G	38404484	2	3	639	1	0	0	0	0	0	0	0	1	17474	842	30	4		4	XYLB	3	38404484	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	1361972	38404484	159617946	17	37814											
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	50257565	50257565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	50257565	A	G	50257565	3	3	639	1	0	0	0	0	1	0	0	0	14618	217	8	3	1529	3	SLC38A3	3	50257565	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	11853081	50257565	147764865	18	37815											
ABHD10	55347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111700691	111700691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	111700691	A	G	111700691	3	3	639	1	0	0	0	0	1	0	0	0	74	449	16	3	209	3	ABHD10	3	111700691	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	61443126	111700691	86321739	19	37816											
EEFSEC	60678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127981023	127981023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	127981023	G	C	127981023	3	2	639	1	0	0	0	0	1	0	0	0	4933	1203	42	4	587	4	EEFSEC	3	127981023	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	16280332	127981023	70041407	20	37817											
ZMAT3	64393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178785387	178785387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	178785387	C	A	178785387	4	1	639	1	0	0	0	0	0	1	0	0	17705	922	32	4	735	4	ZMAT3	3	178785387	Nonsense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	50804364	178785387	19237043	21	37818											
PDS5A	23244	ucsc.edu	37	4	39911931	39911931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	39911931	T	G	39911931	3	3	639	1	0	0	0	0	1	0	0	0	11698	1432	50	5	3122	5	PDS5A	4	39911931	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08		39911931	151242345	22	37819											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123229112	123229112	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	123229112	T	-	123229112	7	5	639	1	0	1	0	1	0	0	0	0	8215	1725	60	0	10072	0	KIAA1109	4	123229112	Frame_Shift_Del	DEL	T	TCGA-GL-8500-01A-11D-2396-08	83317181	123229112	67925164	23	37820											
SPOCK3	50859	hgsc.bcm.edu;bcgsc.ca	37	4	167713322	167713322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	167713322	G	T	167713322	3	4	639	1	0	0	0	0	1	0	0	0	15093	1333	46	4	613	4	SPOCK3	4	167713322	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	44484210	167713322	23440954	24	37821											
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1324927	1324927	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	1324927	A	T	1324927	3	4	639	1	0	0	0	0	1	0	0	0	3557	28	1	5	496	5	CLPTM1L	5	1324927	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08		1324927	179590333	25	37822											
ITGA2	3673	hgsc.bcm.edu	37	5	52368456	52368456	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	52368456	A	C	52368456	3	2	639	1	0	0	0	0	1	0	0	0	7882	14	1	5	2434	5	ITGA2	5	52368456	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	51043529	52368456	128546804	26	37823											
MOCS2	4338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	52397195	52397196	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	52397196	-	T	52397195	7	5	639	1	0	1	1	0	0	0	0	0	9698	913	32	0	207	0	MOCS2	5	52397195	Frame_Shift_Ins	INS	-	TCGA-GL-8500-01A-11D-2396-08	28739	52397195	128518065	27	37824											
MAST4	375449	hgsc.bcm.edu	37	5	66440576	66440576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	66440576	C	G	66440576	3	3	639	1	0	0	0	0	1	0	0	0	9334	507	18	4	3026	4	MAST4	5	66440576	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	14043381	66440576	114474684	28	37825											
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115822558	115822558	+	Silent	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	115822558	G	A	115822558	2	1	639	1	0	0	0	0	0	0	0	1	14052	963	34	2		2	SEMA6A	5	115822558	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	49381982	115822558	65092702	29	37826											
HSPA9	3313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	137904733	137904733	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	137904733	T	-	137904733	7	5	639	1	0	1	0	1	0	0	0	0	7424	1493	52	0	1675	0	HSPA9	5	137904733	Frame_Shift_Del	DEL	T	TCGA-GL-8500-01A-11D-2396-08	22082175	137904733	43010527	30	37827											
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	170323085	170323085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	170323085	T	A	170323085	3	1	639	1	0	0	0	0	1	0	0	0	13040	1406	49	5	473	5	RANBP17	5	170323085	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	32418352	170323085	10592175	31	37828											
RNF44	22838	hgsc.bcm.edu	37	5	175957116	175957116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	175957116	G	T	175957116	3	4	639	1	0	0	0	0	1	0	0	0	13509	1348	47	4	425	4	RNF44	5	175957116	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	5634031	175957116	4958144	32	37829											
RANBP9	10048	broad.mit.edu	37	6	13711709	13711709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	13711709	G	T	13711709	3	4	639	1	0	0	0	0	1	0	0	0	13045	1116	39	4	2216	4	RANBP9	6	13711709	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08		13711709	157403358	33	37830											
SLC17A4	10050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25773825	25773825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	25773825	G	A	25773825	3	1	639	1	0	0	0	0	1	0	0	0	14432	1291	45	2	936	2	SLC17A4	6	25773825	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	12062116	25773825	145341242	34	37831											
HLA-G	3135	ucsc.edu	37	6	29797247	29797247	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	29797247	C	T	29797247	2	4	639	1	0	0	0	0	0	0	0	1	7219	610	22	2		2	HLA-G	6	29797247	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	4023422	29797247	141317820	35	37832											
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30955264	30955264	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	30955264	T	A	30955264	3	1	639	1	0	0	0	0	1	0	0	0	9984	1551	54	5	1318	5	MUC21	6	30955264	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	1158017	30955264	140159803	36	37833											
MCM3	4172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52141973	52141973	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	52141973	G	C	52141973	3	2	639	1	0	0	0	0	1	0	0	0	9394	1299	45	4	1409	4	MCM3	6	52141973	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	21186709	52141973	118973094	37	37834											
COL19A1	1310	broad.mit.edu	37	6	70866589	70866589	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	70866589	G	-	70866589	7	5	639	1	0	1	0	1	0	0	0	0	3678	1348	47	0	2396	0	COL19A1	6	70866589	Frame_Shift_Del	DEL	G	TCGA-GL-8500-01A-11D-2396-08	18724616	70866589	100248478	38	37835											
FERD3L	222894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	19184646	19184646	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	19184646	T	-	19184646	7	5	639	1	0	1	0	1	0	0	0	0	5823	1435	50	0	164	0	FERD3L	7	19184646	Frame_Shift_Del	DEL	T	TCGA-GL-8500-01A-11D-2396-08		19184646	139954017	39	37836											
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	84636164	84636164	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	84636164	G	-	84636164	7	5	639	1	0	1	0	1	0	0	0	0	14040	1029	36	0	479	0	SEMA3D	7	84636164	Frame_Shift_Del	DEL	G	TCGA-GL-8500-01A-11D-2396-08	65451518	84636164	74502499	40	37837											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138597164	138597164	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	138597164	A	C	138597164	3	2	639	1	0	0	0	0	1	0	0	0	8251	333	12	5	3003	5	KIAA1549	7	138597164	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	53961000	138597164	20541499	41	37838											
ATP6V0E2	155066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149576654	149576654	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	149576654	C	G	149576654	3	3	639	1	0	0	0	0	1	0	0	0	1176	652	23	4	638	4	ATP6V0E2	7	149576654	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	10979490	149576654	9562009	42	37839											
NEIL2	252969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	11637150	11637150	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	11637150	A	-	11637150	7	5	639	1	0	1	0	1	0	0	0	0	10326	246	9	0	193	0	NEIL2	8	11637150	Frame_Shift_Del	DEL	A	TCGA-GL-8500-01A-11D-2396-08		11637150	134726872	43	37840											
GOT1L1	137362	hgsc.bcm.edu	37	8	37797478	37797478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	37797478	A	G	37797478	3	3	639	1	0	0	0	0	1	0	0	0	6587	420	15	3	1076	3	GOT1L1	8	37797478	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	26160328	37797478	108566544	44	37841											
LYN	4067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	56922610	56922610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	56922610	C	A	56922610	3	1	639	1	0	0	0	0	1	0	0	0	9114	479	17	4	1526	4	LYN	8	56922610	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	19125132	56922610	89441412	45	37842											
GEM	2669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95262646	95262646	+	Silent	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	95262646	G	A	95262646	2	1	639	1	0	0	0	0	0	0	0	1	6336	1310	46	2		2	GEM	8	95262646	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	38340036	95262646	51101376	46	37843											
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95419720	95419720	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	95419720	T	-	95419720	7	5	639	1	0	1	0	1	0	0	0	0	13005	1493	52	0	2048	0	RAD54B	8	95419720	Frame_Shift_Del	DEL	T	TCGA-GL-8500-01A-11D-2396-08	157074	95419720	50944302	47	37844											
PTK2	5747	hgsc.bcm.edu	37	8	141684434	141684434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	141684434	A	G	141684434	3	3	639	1	0	0	0	0	1	0	0	0	12773	304	11	3	502	3	PTK2	8	141684434	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	46264714	141684434	4679588	48	37845											
PLEC	5339	hgsc.bcm.edu	37	8	144997533	144997533	+	Silent	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	144997533	C	G	144997533	2	3	639	1	0	0	0	0	0	0	0	1	12059	813	29	4		4	PLEC	8	144997533	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	3313099	144997533	1366489	49	37846											
GRINA	2907	hgsc.bcm.edu	37	8	145066937	145066937	+	Silent	SNP	G	G	A	rs184930535		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	145066937	G	A	145066937	2	1	639	1	0	0	0	0	0	0	0	1	6792	1074	38	1		1	GRINA	8	145066937	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	69404	145066937	1297085	50	37847											
OR13J1	392309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35869823	35869823	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	35869823	C	T	35869823	2	4	639	1	0	0	0	0	0	0	0	1	10951	523	19	1		1	OR13J1	9	35869823	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08		35869823	105343608	51	37848											
SECISBP2	79048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	91965762	91965762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	91965762	C	T	91965762	3	4	639	1	0	0	0	0	1	0	0	0	14019	838	29	2	2162	2	SECISBP2	9	91965762	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	56095939	91965762	49247669	52	37849											
RAD23B	5887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	110091836	110091836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	110091836	G	A	110091836	3	1	639	1	0	0	0	0	1	0	0	0	12996	1001	35	2	1167	2	RAD23B	9	110091836	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	18126074	110091836	31121595	53	37850											
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125751642	125751642	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	125751642	C	T	125751642	2	4	639	1	0	0	0	0	0	0	0	1	12977	813	29	2		2	RABGAP1	9	125751642	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	15659806	125751642	15461789	54	37851											
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	22022934	22022934	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	22022934	A	T	22022934	3	4	639	1	0	0	0	0	1	0	0	0	9633	217	8	5	2860	5	MLLT10	10	22022934	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08		22022934	113511813	55	37852											
ANXA11	311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	81927005	81927005	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	81927005	A	C	81927005	3	2	639	1	0	0	0	0	1	0	0	0	716	188	7	5	935	5	ANXA11	10	81927005	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	59904071	81927005	53607742	56	37853											
PSTK	118672	hgsc.bcm.edu;broad.mit.edu	37	10	124740205	124740205	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	124740205	A	G	124740205	2	3	639	1	0	0	0	0	0	0	0	1	12730	262	10	3		3	PSTK	10	124740205	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08	42813200	124740205	10794542	57	37854											
MUC5B	727897	hgsc.bcm.edu	37	11	1253368	1253368	+	Silent	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	1253368	C	A	1253368	2	1	639	1	0	0	0	0	0	0	0	1	9986	668	24	4		4	MUC5B	11	1253368	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08		1253368	133753148	58	37855											
INCENP	3619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61912744	61912744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	61912744	G	A	61912744	3	1	639	1	0	0	0	0	1	0	0	0	7740	1058	37	1	1865	1	INCENP	11	61912744	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	60659376	61912744	73093772	59	37856											
EED	8726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	85956385	85956385	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	85956385	T	A	85956385	3	1	639	1	0	0	0	0	1	0	0	0	4924	1478	51	5	116	5	EED	11	85956385	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	24043641	85956385	49050131	60	37857											
SLC35F2	54733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	107677532	107677532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	107677532	A	C	107677532	3	2	639	1	0	0	0	0	1	0	0	0	14602	159	6	5	659	5	SLC35F2	11	107677532	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	21721147	107677532	27328984	61	37858											
SIDT2	51092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117058116	117058118	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	117058118	TTC	-	117058116	7	5	639	1	0	1	0	1	0	0	0	0	14316	1490	52	0	1080	0	SIDT2	11	117058116	In_Frame_Del	DEL	TTC	TCGA-GL-8500-01A-11D-2396-08	9380584	117058116	17948400	62	37859											
SLC6A12	6539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	308019	308019	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	308019	A	T	308019	3	4	639	1	0	0	0	0	1	0	0	0	14688	420	15	5	1090	5	SLC6A12	12	308019	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08		308019	133543876	63	37860											
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	401948	401948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	401948	A	G	401948	3	3	639	1	0	0	0	0	1	0	0	0	8140	188	7	3	237	3	KDM5A	12	401948	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	93929	401948	133449947	64	37861											
C12orf5	57103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4461705	4461705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	4461705	C	G	4461705	3	3	639	1	0	0	0	0	1	0	0	0	1696	912	32	4	683	4	C12orf5	12	4461705	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	4059757	4461705	129390190	65	37862											
GPR162	27239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6933600	6933600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	6933600	T	C	6933600	3	2	639	1	0	0	0	0	1	0	0	0	6673	1841	64	3	557	3	GPR162	12	6933600	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	2471895	6933600	126918295	66	37863											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26809443	26809443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	26809443	C	G	26809443	3	3	639	1	0	0	0	0	1	0	0	0	7928	768	27	4	6030	4	ITPR2	12	26809443	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	19875843	26809443	107042452	67	37864											
DIP2B	57609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51092173	51092173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	51092173	A	G	51092173	3	3	639	1	0	0	0	0	1	0	0	0	4530	449	16	3	2181	3	DIP2B	12	51092173	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	24282730	51092173	82759722	68	37865											
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53680427	53680427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	53680427	C	A	53680427	3	1	639	1	0	0	0	0	1	0	0	0	5255	623	22	4	3973	4	ESPL1	12	53680427	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	2588254	53680427	80171468	69	37866											
RDH5	5959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56115258	56115258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	56115258	A	G	56115258	3	3	639	1	0	0	0	0	1	0	0	0	13208	304	11	3	292	3	RDH5	12	56115258	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	2434831	56115258	77736637	70	37867											
PTPRB	5787	hgsc.bcm.edu	37	12	70964842	70964842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	70964842	C	A	70964842	3	1	639	1	0	0	0	0	1	0	0	0	12809	855	30	4	3401	4	PTPRB	12	70964842	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	14849584	70964842	62887053	71	37868											
GLIPR1L2	144321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	75785104	75785104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	75785104	C	A	75785104	3	1	639	1	0	0	0	0	1	0	0	0	6450	855	30	4	210	4	GLIPR1L2	12	75785104	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	4820262	75785104	58066791	72	37869											
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113915023	113915023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	113915023	C	G	113915023	3	3	639	1	0	0	0	0	1	0	0	0	4059	826	29	4	2208	4	CUL4A	13	113915023	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08		113915023	1254855	73	37870											
LAMP1	3916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113963979	113963979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	113963979	T	C	113963979	3	2	639	1	0	0	0	0	1	0	0	0	8624	1435	50	3	215	3	LAMP1	13	113963979	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	48956	113963979	1205899	74	37871											
BAZ1A	11177	hgsc.bcm.edu	37	14	35295323	35295323	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	35295323	A	G	35295323	2	3	639	1	0	0	0	0	0	0	0	1	1329	330	12	3		3	BAZ1A	14	35295323	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08		35295323	72054217	75	37872											
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	55655750	55655751	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	AT	55655751	-	AT	55655750	7	5	639	1	0	1	1	0	0	0	0	0	4565	478	17	0	2559	0	DLGAP5	14	55655750	Frame_Shift_Ins	INS	-	TCGA-GL-8500-01A-11D-2396-08	20360427	55655750	51693790	76	37873											
PPM1A	5494	hgsc.bcm.edu;broad.mit.edu	37	14	60712638	60712638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	60712638	A	G	60712638	3	3	639	1	0	0	0	0	1	0	0	0	12345	64	3	3	75	3	PPM1A	14	60712638	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	5056888	60712638	46636902	77	37874											
GPHB5	122876	broad.mit.edu	37	14	63779788	63779788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	63779788	C	A	63779788	3	1	639	1	0	0	0	0	1	0	0	0	6616	564	20	4	33	4	GPHB5	14	63779788	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	3067150	63779788	43569752	78	37875											
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40661086	40661086	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	-	40661086	A	-	40661086	7	5	639	1	0	1	0	1	0	0	0	0	4542	130	5	0	2803	0	DISP2	15	40661086	Frame_Shift_Del	DEL	A	TCGA-GL-8500-01A-11D-2396-08		40661086	61870306	79	37876											
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52606371	52606371	+	Silent	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	52606371	T	C	52606371	2	2	639	1	0	0	0	0	0	0	0	1	10085	1567	55	3		3	MYO5A	15	52606371	Silent	SNP	T	TCGA-GL-8500-01A-11D-2396-08	11945285	52606371	49925021	80	37877											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2812806	2812806	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	2812806	C	G	2812806	3	3	639	1	0	0	0	0	1	0	0	0	15181	709	25	4	2315	4	SRRM2	16	2812806	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08		2812806	87541947	81	37878											
PRKCB	5579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23848699	23848699	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	23848699	C	T	23848699	2	4	639	1	0	0	0	0	0	0	0	1	12518	784	28	2		2	PRKCB	16	23848699	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	21035893	23848699	66506054	82	37879											
ZNF48	197407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30408740	30408740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	30408740	G	C	30408740	3	2	639	1	0	0	0	0	1	0	0	0	17946	1203	42	4	175	4	ZNF48	16	30408740	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	6560041	30408740	59946013	83	37880											
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88653085	88653085	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	88653085	C	T	88653085	2	4	639	1	0	0	0	0	0	0	0	1	17580	825	29	2		2	ZC3H18	16	88653085	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	58244345	88653085	1701668	84	37881											
SAT2	112483	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7530935	7530935	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	7530935	G	A	7530935	4	1	639	1	0	0	0	0	0	1	0	0	13865	1124	39	1	517	1	SAT2	17	7530935	Nonsense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08		7530935	73664275	85	37882											
KDM6B	23135	hgsc.bcm.edu	37	17	7750183	7750183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	7750183	C	T	7750183	3	4	639	1	0	0	0	0	1	0	0	0	8145	594	21	2	780	2	KDM6B	17	7750183	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	219248	7750183	73445027	86	37883											
KDM6B	23135	hgsc.bcm.edu	37	17	7750211	7750211	+	Silent	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	7750211	A	C	7750211	2	2	639	1	0	0	0	0	0	0	0	1	8145	146	6	5		5	KDM6B	17	7750211	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08	28	7750211	73444999	87	37884											
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18181411	18181411	+	Missense_Mutation	SNP	G	G	A	rs201017469		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	18181411	G	A	18181411	3	1	639	1	0	0	0	0	1	0	0	0	16379	1232	43	2	608	2	TOP3A	17	18181411	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	10431200	18181411	63013799	88	37885											
GPS1	2873	hgsc.bcm.edu	37	17	80011903	80011903	+	Missense_Mutation	SNP	C	C	A	rs199969665	alternate_allele	TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	80011903	C	A	80011903	3	1	639	1	0	0	0	0	1	0	0	0	6739	652	23	4	453	4	GPS1	17	80011903	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	61830492	80011903	1183307	89	37886											
MRO	83876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	48331527	48331527	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	48331527	A	G	48331527	2	3	639	1	0	0	0	0	0	0	0	1	9779	214	8	3		3	MRO	18	48331527	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08		48331527	29745721	90	37887											
NEDD4L	23327	hgsc.bcm.edu	37	18	56056373	56056373	+	Silent	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	56056373	T	C	56056373	2	2	639	1	0	0	0	0	0	0	0	1	10318	1829	64	3		3	NEDD4L	18	56056373	Silent	SNP	T	TCGA-GL-8500-01A-11D-2396-08	7724846	56056373	22020875	91	37888											
LINGO3	645191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	2290213	2290213	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	2290213	C	T	2290213	2	4	639	1	0	0	0	0	0	0	0	1	8823	755	27	1		1	LINGO3	19	2290213	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08		2290213	56838770	92	37889											
ZNF557	79230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7075688	7075688	+	Silent	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	7075688	C	G	7075688	2	3	639	1	0	0	0	0	0	0	0	1	18000	695	24	4		4	ZNF557	19	7075688	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	4785475	7075688	52053295	93	37890											
CTXN1	404217	hgsc.bcm.edu	37	19	7990272	7990272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	7990272	C	T	7990272	3	4	639	1	0	0	0	0	1	0	0	0	4051	768	27	1	100	1	CTXN1	19	7990272	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	914584	7990272	51138711	94	37891											
CACNA1A	773	hgsc.bcm.edu	37	19	13318726	13318726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	13318726	C	T	13318726	3	4	639	1	0	0	0	0	1	0	0	0	2540	652	23	1	602	1	CACNA1A	19	13318726	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	5328454	13318726	45810257	95	37892											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13346025	13346025	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	13346025	G	A	13346025	4	1	639	1	0	0	0	0	0	1	0	0	2540	1328	46	2	2550	2	CACNA1A	19	13346025	Nonsense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	27299	13346025	45782958	96	37893											
SLC1A6	6511	hgsc.bcm.edu	37	19	15067322	15067322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	15067322	G	T	15067322	3	4	639	1	0	0	0	0	1	0	0	0	14449	1386	48	4	575	4	SLC1A6	19	15067322	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	1721297	15067322	44061661	97	37894											
GDF15	9518	hgsc.bcm.edu	37	19	18499142	18499142	+	Silent	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	18499142	C	A	18499142	2	1	639	1	0	0	0	0	0	0	0	1	6320	639	23	4		4	GDF15	19	18499142	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	3431820	18499142	40629841	98	37895											
ZNF461	92283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37147417	37147417	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	37147417	G	C	37147417	3	2	639	1	0	0	0	0	1	0	0	0	17937	932	33	4	1538	4	ZNF461	19	37147417	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	18648275	37147417	21981566	99	37896											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39058443	39058443	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	39058443	C	T	39058443	2	4	639	1	0	0	0	0	0	0	0	1	13781	639	23	1		1	RYR1	19	39058443	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	1911026	39058443	20070540	100	37897											
ERCC2	2068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45868315	45868315	+	Silent	SNP	G	G	A	rs139263710	alternate_allele	TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	45868315	G	A	45868315	2	1	639	1	0	0	0	0	0	0	0	1	5215	1020	36	2		2	ERCC2	19	45868315	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	6809872	45868315	13260668	101	37898											
BAX	581	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	49464330	49464330	+	Silent	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	49464330	T	C	49464330	2	2	639	1	0	0	0	0	0	0	0	1	1328	1413	49	3		3	BAX	19	49464330	Silent	SNP	T	TCGA-GL-8500-01A-11D-2396-08	3596015	49464330	9664653	102	37899											
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56244868	56244868	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	56244868	A	T	56244868	3	4	639	1	0	0	0	0	1	0	0	0	10491	449	16	5	2678	5	NLRP9	19	56244868	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	6780538	56244868	2884115	103	37900											
ZNF749	388567	hgsc.bcm.edu	37	19	57954667	57954667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	57954667	C	G	57954667	3	3	639	1	0	0	0	0	1	0	0	0	18143	710	25	4	161	4	ZNF749	19	57954667	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	1709799	57954667	1174316	104	37901											
MZF1	7593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	59073766	59073766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	59073766	G	T	59073766	3	4	639	1	0	0	0	0	1	0	0	0	10115	1020	36	4	330	4	MZF1	19	59073766	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	1119099	59073766	55217	105	37902											
SIRPA	140885	hgsc.bcm.edu	37	20	1895835	1895835	+	Missense_Mutation	SNP	C	C	T	rs17855612		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	1895835	C	T	1895835	3	4	639	1	0	0	0	0	1	0	0	0	14345	768	27	1	176	1	SIRPA	20	1895835	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08		1895835	61129685	106	37903											
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2776796	2776796	+	Silent	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	2776796	C	G	2776796	2	3	639	1	0	0	0	0	0	0	0	1	3839	581	21	4		4	CPXM1	20	2776796	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	880961	2776796	60248724	107	37904											
MACROD2	140733	hgsc.bcm.edu	37	20	14066372	14066372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	14066372	C	T	14066372	3	4	639	1	0	0	0	0	1	0	0	0	9153	739	26	2	279	2	MACROD2	20	14066372	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	11289576	14066372	48959148	108	37905											
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	33371363	33371363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	33371363	A	C	33371363	3	2	639	1	0	0	0	0	1	0	0	0	7465	333	12	5	2053	5	HUNK	21	33371363	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08		33371363	14758532	109	37906											
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	38568034	38568035	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	38568035	-	T	38568034	7	5	639	1	0	1	1	0	0	0	0	0	16709	913	32	0	5438	0	TTC3	21	38568034	Frame_Shift_Ins	INS	-	TCGA-GL-8500-01A-11D-2396-08	5196671	38568034	9561861	110	37907											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18293513	18293513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	C	18293513	T	C	18293513	3	2	639	1	0	0	0	0	1	0	0	0	9578	1559	54	3	516	3	MICAL3	22	18293513	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08		18293513	33011053	111	37908											
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30413918	30413918	+	Silent	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	T	30413918	G	T	30413918	2	4	639	1	0	0	0	0	0	0	0	1	9952	1306	46	4		4	MTMR3	22	30413918	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	12120405	30413918	20890648	112	37909											
POLR2F	5435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38355418	38355418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	38355418	C	G	38355418	3	3	639	1	0	0	0	0	1	0	0	0	12226	816	29	4	166	4	POLR2F	22	38355418	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	7941500	38355418	12949148	113	37910											
KDELR3	11015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38875733	38875733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	G	38875733	A	G	38875733	3	3	639	1	0	0	0	0	1	0	0	0	8128	14	1	3	338	3	KDELR3	22	38875733	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	520315	38875733	12428833	114	37911											
ZXDB	158586	hgsc.bcm.edu	37	X	57619097	57619097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	A	57619097	G	A	57619097	3	1	639	1	0	0	0	0	1	0	0	0	18263	1116	39	1	618	1	ZXDB	23	57619097	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08		57619097	97651463	115	37912											
MTOR	2475	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11270889	11270889	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	11270889	G	A	11270889	2	1	640	1	0	0	0	0	0	0	0	1	9961	1277	45	2		2	MTOR	1	11270889	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		11270889	237979732	1	37913											
MTF1	4520	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38288352	38288352	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	38288352	G	T	38288352	4	4	640	1	0	0	0	0	0	1	0	0	9929	1294	45	4	1065	4	MTF1	1	38288352	Nonsense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	27017463	38288352	210962269	2	37914											
RIMS3	9783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41107442	41107442	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	41107442	C	T	41107442	2	4	640	1	0	0	0	0	0	0	0	1	13382	912	32	2		2	RIMS3	1	41107442	Silent	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	2819090	41107442	208143179	3	37915											
LRRC42	115353	broad.mit.edu;bcgsc.ca	37	1	54417869	54417876	+	Frame_Shift_Del	DEL	AAGAGAAG	AAGAGAAG	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AAGAGAAG	AAGAGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	54417876	AAGAGAAG	-	54417869	7	5	640	1	0	1	0	1	0	0	0	0	9007	14	1	0	199	0	LRRC42	1	54417869	Frame_Shift_Del	DEL	AAGAGAAG	TCGA-GL-A4EM-01A-11D-A25F-10	13310427	54417869	194832752	4	37916											
MCL1	4170	broad.mit.edu	37	1	150551617	150551617	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	150551617	C	T	150551617	2	4	640	1	0	0	0	0	0	0	0	1	9391	796	28	2		2	MCL1	1	150551617	Silent	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	96133748	150551617	98699004	5	37917											
PSMB4	5692	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151372469	151372469	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	151372469	G	A	151372469	2	1	640	1	0	0	0	0	0	0	0	1	12689	1277	45	2		2	PSMB4	1	151372469	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	820852	151372469	97878152	6	37918											
SLC25A44	9673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156169658	156169658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	156169658	T	C	156169658	3	2	640	1	0	0	0	0	1	0	0	0	14522	1435	50	3	22	3	SLC25A44	1	156169658	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	4797189	156169658	93080963	7	37919											
OR6K6	128371	broad.mit.edu;bcgsc.ca	37	1	158724869	158724869	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	158724869	T	-	158724869	7	5	640	1	0	1	0	1	0	0	0	0	11211	1500	52	0	266	0	OR6K6	1	158724869	Frame_Shift_Del	DEL	T	TCGA-GL-A4EM-01A-11D-A25F-10	2555211	158724869	90525752	8	37920											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186024754	186024754	+	Silent	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	186024754	T	A	186024754	2	1	640	1	0	0	0	0	0	0	0	1	7227	1799	63	5		5	HMCN1	1	186024754	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	27299885	186024754	63225867	9	37921											
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	204379087	204379089	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	204379089	CTA	-	204379087	7	5	640	1	0	1	0	1	0	0	0	0	12374	913	32	0	696	0	PPP1R15B	1	204379087	In_Frame_Del	DEL	CTA	TCGA-GL-A4EM-01A-11D-A25F-10	18354333	204379087	44871534	10	37922											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	215820886	215820886	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	215820886	G	T	215820886	2	4	640	1	0	0	0	0	0	0	0	1	17048	1280	45	4		4	USH2A	1	215820886	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	11441799	215820886	33429735	11	37923											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228462497	228462497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	228462497	G	C	228462497	3	2	640	1	0	0	0	0	1	0	0	0	10819	1145	40	4	5982	4	OBSCN	1	228462497	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	12641611	228462497	20788124	12	37924											
PKDCC	91461	broad.mit.edu;bcgsc.ca	37	2	42281437	42281445	+	In_Frame_Del	DEL	AATGCCTAC	AATGCCTAC	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AATGCCTAC	AATGCCTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	42281445	AATGCCTAC	-	42281437	7	5	640	1	0	1	0	1	0	0	0	0	11976	362	13	0	1034	0	PKDCC	2	42281437	In_Frame_Del	DEL	AATGCCTAC	TCGA-GL-A4EM-01A-11D-A25F-10		42281437	200917936	13	37925											
MSH6	2956	broad.mit.edu;bcgsc.ca	37	2	48025884	48025885	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	48025885	-	G	48025884	7	5	640	1	0	1	1	0	0	0	0	0	9881	1567	55	0	776	0	MSH6	2	48025884	Frame_Shift_Ins	INS	-	TCGA-GL-A4EM-01A-11D-A25F-10	5744447	48025884	195173489	14	37926											
MFSD9	84804	broad.mit.edu	37	2	103343361	103343361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	103343361	G	A	103343361	3	1	640	1	0	0	0	0	1	0	0	0	9546	942	33	2	1066	2	MFSD9	2	103343361	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	55317477	103343361	139856012	15	37927											
ZEB2	9839	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	145157390	145157390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	145157390	C	T	145157390	3	4	640	1	0	0	0	0	1	0	0	0	17636	565	20	2	2292	2	ZEB2	2	145157390	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	41814029	145157390	98041983	16	37928											
IKZF2	22807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	213872808	213872808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	213872808	C	A	213872808	3	1	640	1	0	0	0	0	1	0	0	0	7622	637	22	4	727	4	IKZF2	2	213872808	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	68715418	213872808	29326565	17	37929											
PER2	8864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239162231	239162231	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	239162231	G	A	239162231	2	1	640	1	0	0	0	0	0	0	0	1	11737	1103	39	1		1	PER2	2	239162231	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	25289423	239162231	4037142	18	37930											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52429465	52429465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	52429465	T	A	52429465	3	1	640	1	0	0	0	0	1	0	0	0	4599	1551	54	5	11380	5	DNAH1	3	52429465	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		52429465	145592965	19	37931											
LRIG1	26018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	66436541	66436541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	66436541	C	G	66436541	3	3	640	1	0	0	0	0	1	0	0	0	8951	680	24	4	1656	4	LRIG1	3	66436541	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	14007076	66436541	131585889	20	37932											
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	89478285	89478285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	89478285	A	C	89478285	3	2	640	1	0	0	0	0	1	0	0	0	5170	217	8	5	2176	5	EPHA3	3	89478285	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	23041744	89478285	108544145	21	37933											
ATR	545	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142279142	142279142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	142279142	G	T	142279142	3	4	640	1	0	0	0	0	1	0	0	0	1204	933	33	4	6598	4	ATR	3	142279142	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	52800857	142279142	55743288	22	37934											
CP	1356	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	148924070	148924070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	148924070	T	G	148924070	3	3	640	1	0	0	0	0	1	0	0	0	3789	1754	61	5	2160	5	CP	3	148924070	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	6644928	148924070	49098360	23	37935											
NDUFB5	4711	broad.mit.edu	37	3	179322628	179322629	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	179322629	-	G	179322628	7	5	640	1	0	1	1	0	0	0	0	0	10291	759	27	0	27	0	NDUFB5	3	179322628	Frame_Shift_Ins	INS	-	TCGA-GL-A4EM-01A-11D-A25F-10	30398558	179322628	18699802	24	37936											
ABCC5	10057	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183732125	183732125	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	183732125	C	G	183732125	3	3	640	1	0	0	0	0	1	0	0	0	56	565	20	4	4413	4	ABCC5	3	183732125	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	4409497	183732125	14290305	25	37937											
MUC4	4585	broad.mit.edu	37	3	195506331	195506331	+	Silent	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	195506331	T	A	195506331	2	1	640	1	0	0	0	0	0	0	0	1	9985	1567	55	5		5	MUC4	3	195506331	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	11774206	195506331	2516099	26	37938											
MUC4	4585	bcgsc.ca	37	3	195510130	195510130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	195510130	G	T	195510130	3	4	640	1	0	0	0	0	1	0	0	0	9985	1029	36	4		4	MUC4	3	195510130	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	3799	195510130	2512300	27	37939											
CPZ	8532	hgsc.bcm.edu	37	4	8621250	8621250	+	Missense_Mutation	SNP	G	G	A	rs144042196		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	8621250	G	A	8621250	3	1	640	1	0	0	0	0	1	0	0	0	3841	1087	38	1	1907	1	CPZ	4	8621250	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		8621250	182533026	28	37940											
GBA3	57733	broad.mit.edu	37	4	22737642	22737642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	22737642	G	T	22737642	3	4	640	1	0	0	0	0	1	0	0	0	6275	1174	41	4	103	4	GBA3	4	22737642	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	14116392	22737642	168416634	29	37941											
SEC31A	22872	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83769958	83769958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	83769958	T	G	83769958	3	3	640	1	0	0	0	0	1	0	0	0	14011	1478	51	5	1193	5	SEC31A	4	83769958	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	61032316	83769958	107384318	30	37942											
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	94690404	94690404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	94690404	C	T	94690404	3	4	640	1	0	0	0	0	1	0	0	0	6779	710	25	2	2462	2	GRID2	4	94690404	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	10920446	94690404	96463872	31	37943											
ZCCHC10	54819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132342536	132342536	+	Silent	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	132342536	T	G	132342536	2	3	640	1	0	0	0	0	0	0	0	1	17591	1617	56	5		5	ZCCHC10	5	132342536	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		132342536	48572724	32	37944											
DDX41	51428	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176943931	176943931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	176943931	G	T	176943931	3	4	640	1	0	0	0	0	1	0	0	0	4363	1261	44	4	1920	4	DDX41	5	176943931	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	44601395	176943931	3971329	33	37945											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75860944	75860944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	75860944	G	T	75860944	3	4	640	1	0	0	0	0	1	0	0	0	3671	1348	47	4	5315	4	COL12A1	6	75860944	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		75860944	95254123	34	37946											
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76602272	76602272	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	76602272	G	C	76602272	3	2	640	1	0	0	0	0	1	0	0	0	10088	1058	37	4	3078	4	MYO6	6	76602272	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	741328	76602272	94512795	35	37947											
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	122777747	122777747	+	Silent	SNP	A	A	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	122777747	A	G	122777747	2	3	640	1	0	0	0	0	0	0	0	1	14092	11	1	3		3	SERINC1	6	122777747	Silent	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	46175475	122777747	48337320	36	37948											
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21469335	21469335	+	Silent	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	21469335	T	C	21469335	2	2	640	1	0	0	0	0	0	0	0	1	14979	1509	53	3		3	SP4	7	21469335	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		21469335	137669328	37	37949											
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	45010552	45010552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	45010552	G	T	45010552	3	4	640	1	0	0	0	0	1	0	0	0	10081	1232	43	4	2163	4	MYO1G	7	45010552	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	23541217	45010552	114128111	38	37950											
NUP205	23165	broad.mit.edu	37	7	135269748	135269748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	135269748	C	A	135269748	3	1	640	1	0	0	0	0	1	0	0	0	10766	594	21	4	1241	4	NUP205	7	135269748	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	90259196	135269748	23868915	39	37951											
ARMC1	55156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	66534565	66534565	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	66534565	G	C	66534565	3	2	640	1	0	0	0	0	1	0	0	0	949	1116	39	4	660	4	ARMC1	8	66534565	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		66534565	79829457	40	37952											
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	75355127	75355127	+	Splice_Site	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	75355127	T	C	75355127	5	2	640	1	0	0	0	0	0	0	1	0	15996	1652	57	3	473	3	TMC1	9	75355127	Splice_Site	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		75355127	65858304	41	37953											
NOTCH1	4851	broad.mit.edu	37	9	139391937	139391937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	139391937	G	A	139391937	3	1	640	1	0	0	0	0	1	0	0	0	10554	1203	42	2	1417	2	NOTCH1	9	139391937	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	64036810	139391937	1821494	42	37954											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32573863	32573863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	32573863	T	A	32573863	3	1	640	1	0	0	0	0	1	0	0	0	5162	1725	60	5	1027	5	EPC1	10	32573863	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		32573863	102960884	43	37955											
MBL2	4153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	54527970	54527970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	54527970	A	G	54527970	3	3	640	1	0	0	0	0	1	0	0	0	9357	420	15	3	76	3	MBL2	10	54527970	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	21954107	54527970	81006777	44	37956											
HHEX	3087	broad.mit.edu	37	10	94450034	94450038	+	Frame_Shift_Del	DEL	GGGCC	GGGCC	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	GGGCC	GGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	94450038	GGGCC	-	94450034	7	5	640	1	0	1	0	1	0	0	0	0	7098	1219	43	0	293	0	HHEX	10	94450034	Frame_Shift_Del	DEL	GGGCC	TCGA-GL-A4EM-01A-11D-A25F-10	39922064	94450034	41084713	45	37957											
MUC6	4588	broad.mit.edu	37	11	1019461	1019462	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	1019462	-	T	1019461	7	5	640	1	0	1	1	0	0	0	0	0	9987	797	28	0	3491	0	MUC6	11	1019461	Frame_Shift_Ins	INS	-	TCGA-GL-A4EM-01A-11D-A25F-10		1019461	133987055	46	37958											
MUC2	4583	broad.mit.edu	37	11	1092953	1092953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	1092953	C	T	1092953	3	4	640	1	0	0	0	0	1	0	0	0	9982	536	19	1	4890	1	MUC2	11	1092953	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	73492	1092953	133913563	47	37959											
CCDC86	79080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	60609627	60609627	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	60609627	G	T	60609627	2	4	640	1	0	0	0	0	0	0	0	1	2863	1190	42	4		4	CCDC86	11	60609627	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	59516674	60609627	74396889	48	37960											
FERMT3	83706	broad.mit.edu	37	11	63978789	63978789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	63978789	C	T	63978789	3	4	640	1	0	0	0	0	1	0	0	0	5826	893	31	1	571	1	FERMT3	11	63978789	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	3369162	63978789	71027727	49	37961											
RNASEH2C	84153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	65487867	65487867	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	65487867	C	-	65487867	7	5	640	1	0	1	0	1	0	0	0	0	13427	739	26	0	312	0	RNASEH2C	11	65487867	Frame_Shift_Del	DEL	C	TCGA-GL-A4EM-01A-11D-A25F-10	1509078	65487867	69518649	50	37962											
PANX1	24145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93911576	93911576	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	93911576	C	G	93911576	4	3	640	1	0	0	0	0	0	1	0	0	11427	518	18	4	373	4	PANX1	11	93911576	Nonsense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	28423709	93911576	41094940	51	37963											
LPCAT3	10162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7125633	7125633	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	7125633	C	T	7125633	2	4	640	1	0	0	0	0	0	0	0	1	8919	871	31	1		1	LPCAT3	12	7125633	Silent	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10		7125633	126726262	52	37964											
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52188171	52188171	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	52188171	T	A	52188171	3	1	640	1	0	0	0	0	1	0	0	0	13937	1435	50	5	4639	5	SCN8A	12	52188171	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	45062538	52188171	81663724	53	37965											
KRT84	3890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52779218	52779218	+	Missense_Mutation	SNP	C	C	G	rs148258545	alternate_allele	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	52779218	C	G	52779218	3	3	640	1	0	0	0	0	1	0	0	0	8505	507	18	4	1686	4	KRT84	12	52779218	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	591047	52779218	81072677	54	37966											
C12orf29	91298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	88442035	88442035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	88442035	T	A	88442035	3	1	640	1	0	0	0	0	1	0	0	0	1682	1464	51	5	840	5	C12orf29	12	88442035	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	35662817	88442035	45409860	55	37967											
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113333603	113333603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	113333603	C	A	113333603	3	1	640	1	0	0	0	0	1	0	0	0	13564	478	17	4	1953	4	RPH3A	12	113333603	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	24891568	113333603	20518292	56	37968											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39262352	39262352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	39262352	G	C	39262352	3	2	640	1	0	0	0	0	1	0	0	0	6052	1203	42	4	873	4	FREM2	13	39262352	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		39262352	75907526	57	37969											
RAB15	376267	broad.mit.edu;bcgsc.ca	37	14	65418357	65418362	+	In_Frame_Del	DEL	GTATCT	GTATCT	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	GTATCT	GTATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	65418362	GTATCT	-	65418357	7	5	640	1	0	1	0	1	0	0	0	0	12914	1256	44	0	436	0	RAB15	14	65418357	In_Frame_Del	DEL	GTATCT	TCGA-GL-A4EM-01A-11D-A25F-10		65418357	41931183	58	37970											
PLEKHH1	57475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68038953	68038953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	68038953	C	A	68038953	3	1	640	1	0	0	0	0	1	0	0	0	12083	768	27	4	1725	4	PLEKHH1	14	68038953	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	2620596	68038953	39310587	59	37971											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89105224	89105224	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	89105224	T	G	89105224	3	3	640	1	0	0	0	0	1	0	0	0	5102	1493	52	5	1720	5	EML5	14	89105224	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	21066271	89105224	18244316	60	37972											
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102689211	102689211	+	Silent	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	102689211	T	A	102689211	2	1	640	1	0	0	0	0	0	0	0	1	17292	1567	55	5		5	WDR20	14	102689211	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	13583987	102689211	4660329	61	37973											
EIF2AK4	440275	ucsc.edu	37	15	40284411	40284411	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	40284411	G	A	40284411	2	1	640	1	0	0	0	0	0	0	0	1	5001	1281	45	2		2	EIF2AK4	15	40284411	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		40284411	62246981	62	37974											
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40751142	40751142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	40751142	C	A	40751142	3	1	640	1	0	0	0	0	1	0	0	0	1297	797	28	4	481	4	BAHD1	15	40751142	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	466731	40751142	61780250	63	37975											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43378432	43378432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	43378432	C	T	43378432	3	4	640	1	0	0	0	0	1	0	0	0	16913	855	30	2	5345	2	UBR1	15	43378432	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	2627290	43378432	59152960	64	37976											
SLC24A5	283652	broad.mit.edu	37	15	48431306	48431306	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	48431306	T	-	48431306	7	5	640	1	0	1	0	1	0	0	0	0	14482	1609	56	0	1038	0	SLC24A5	15	48431306	Frame_Shift_Del	DEL	T	TCGA-GL-A4EM-01A-11D-A25F-10	5052874	48431306	54100086	65	37977											
C15orf60	283677	broad.mit.edu	37	15	73735652	73735652	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	73735652	G	T	73735652	2	4	640	1	0	0	0	0	0	0	0	1	1810	1335	47	4		4	C15orf60	15	73735652	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	25304346	73735652	28795740	66	37978											
POLG	5428	broad.mit.edu;bcgsc.ca	37	15	89872222	89872222	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	89872222	G	-	89872222	7	5	640	1	0	1	0	1	0	0	0	0	12207	1335	47	0	2824	0	POLG	15	89872222	Frame_Shift_Del	DEL	G	TCGA-GL-A4EM-01A-11D-A25F-10	16136570	89872222	12659170	67	37979											
MMP25	64386	hgsc.bcm.edu	37	16	3100091	3100091	+	Missense_Mutation	SNP	G	G	A	rs146181243		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	3100091	G	A	3100091	3	1	640	1	0	0	0	0	1	0	0	0	9669	1145	40	1	324	1	MMP25	16	3100091	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		3100091	87254662	68	37980											
ANKS4B	257629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	21245180	21245180	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	21245180	A	-	21245180	7	5	640	1	0	1	0	1	0	0	0	0	691	391	14	0	124	0	ANKS4B	16	21245180	Frame_Shift_Del	DEL	A	TCGA-GL-A4EM-01A-11D-A25F-10	18145089	21245180	69109573	69	37981											
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69368509	69368509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	69368509	A	T	69368509	3	4	640	1	0	0	0	0	1	0	0	0	3666	188	7	5	522	5	COG8	16	69368509	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	48123329	69368509	20986244	70	37982											
CHRNB1	1140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7350850	7350850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	7350850	A	T	7350850	3	4	640	1	0	0	0	0	1	0	0	0	3392	101	4	5	513	5	CHRNB1	17	7350850	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10		7350850	73844360	71	37983											
UTP6	55813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30219812	30219812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	30219812	T	C	30219812	3	2	640	1	0	0	0	0	1	0	0	0	17114	1681	58	3	1539	3	UTP6	17	30219812	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	22868962	30219812	50975398	72	37984											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	57760151	57760152	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	57760152	AG	-	57760151	7	5	640	1	0	1	0	1	0	0	0	0	3568	69	3	0	3852	0	CLTC	17	57760151	Frame_Shift_Del	DEL	AG	TCGA-GL-A4EM-01A-11D-A25F-10	27540339	57760151	23435059	73	37985											
SLC25A19	60386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73273550	73273550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	73273550	G	C	73273550	3	2	640	1	0	0	0	0	1	0	0	0	14494	991	35	4	312	4	SLC25A19	17	73273550	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	15513399	73273550	7921660	74	37986											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	78321624	78321624	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	78321624	C	-	78321624	7	5	640	1	0	1	0	1	0	0	0	0	13490	845	30	0	9918	0	RNF213	17	78321624	Frame_Shift_Del	DEL	C	TCGA-GL-A4EM-01A-11D-A25F-10	5048074	78321624	2873586	75	37987											
PIGN	23556	bcgsc.ca	37	18	59807700	59807700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	59807700	G	A	59807700	3	1	640	1	0	0	0	0	1	0	0	0	11900	1261	44	2	1899	2	PIGN	18	59807700	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		59807700	18269548	76	37988											
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14028999	14028999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	14028999	G	T	14028999	3	4	640	1	0	0	0	0	1	0	0	0	2728	1145	40	4	891	4	CC2D1A	19	14028999	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		14028999	45099984	77	37989											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35505160	35505160	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	35505160	C	G	35505160	3	3	640	1	0	0	0	0	1	0	0	0	6754	652	23	4	976	4	GRAMD1A	19	35505160	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	21476161	35505160	23623823	78	37990											
FCGBP	8857	bcgsc.ca	37	19	40374023	40374023	+	Missense_Mutation	SNP	C	C	T	rs71334845	alternate_allele	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	40374023	C	T	40374023	3	4	640	1	0	0	0	0	1	0	0	0	5785	536	19	1	4206	1	FCGBP	19	40374023	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	4868863	40374023	18754960	79	37991											
CYP2A6	1548	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41350548	41350548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	41350548	G	T	41350548	3	4	640	1	0	0	0	0	1	0	0	0	4164	1203	42	4	201	4	CYP2A6	19	41350548	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	976525	41350548	17778435	80	37992											
ZNF235	9310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44792844	44792844	+	Silent	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	44792844	T	C	44792844	2	2	640	1	0	0	0	0	0	0	0	1	17800	1393	49	3		3	ZNF235	19	44792844	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	3442296	44792844	14336139	81	37993											
ZNF154	7710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58213806	58213806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	58213806	T	C	58213806	3	2	640	1	0	0	0	0	1	0	0	0	17747	1522	53	3	806	3	ZNF154	19	58213806	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	13420962	58213806	915177	82	37994											
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	58385793	C	T	58385793	3	4	640	1	0	0	0	0	1	0	0	0	18188	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	171987	58385793	743190	83	37995	486	2									
ZNF814	730051	hgsc.bcm.edu	37	19	58385799	58385799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	58385799	C	T	58385799	3	4	640	1	0	0	0	0	1	0	0	0	18188	623	22	2	1612	2	ZNF814	19	58385799	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	6	58385799	743184	84	37996	486	2									
IDH3B	3420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	2639397	2639398	+	Missense_Mutation	DNP	CT	CT	TA	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	TA	2639398	CT	TA	2639397	3	4	640	1	0	0	0	0	1	0	0	0	7504	924	32	2	88	2	IDH3B	20	2639397	Missense_Mutation	DNP	CT	TCGA-GL-A4EM-01A-11D-A25F-10		2639397	60386123	85	37997	487	2									
IDH3B	3420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	2639399	2639399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	C	2639399	A	C	2639399	3	2	640	1	0	0	0	0	1	0	0	0	7504	433	15	5	90	5	IDH3B	20	2639399	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	2	2639399	60386121	86	37998	487	2									
ZSWIM3	140831	bcgsc.ca	37	20	44486494	44486501	+	Frame_Shift_Del	DEL	TGAGGACT	TGAGGACT	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	TGAGGACT	TGAGGACT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	44486501	TGAGGACT	-	44486494	7	5	640	1	0	1	0	1	0	0	0	0	18254	1471	51	0	32	0	ZSWIM3	20	44486494	Frame_Shift_Del	DEL	TGAGGACT	TCGA-GL-A4EM-01A-11D-A25F-10	41847095	44486494	18539026	87	37999											
RPS6KA3	6197	broad.mit.edu	37	X	20222171	20222171	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	A	20222171	G	A	20222171	2	1	640	1	0	0	0	0	0	0	0	1	13665	1335	47	2		2	RPS6KA3	23	20222171	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		20222171	135048389	88	38000											
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70316474	70316474	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	70316474	C	T	70316474	2	4	640	1	0	0	0	0	0	0	0	1	6032	668	24	2		2	FOXO4	23	70316474	Silent	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	50094303	70316474	84954086	89	38001											
ALG13	79868	ucsc.edu	37	X	110987897	110987897	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	T	110987897	G	T	110987897	2	4	640	1	0	0	0	0	0	0	0	1	515	1304	45	4		4	ALG13	23	110987897	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	40671423	110987897	44282663	90	38002											
STAG2	10735	broad.mit.edu	37	X	123190070	123190070	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	-	123190070	A	-	123190070	7	5	640	1	0	1	0	1	0	0	0	0	15255	246	9	0	1335	0	STAG2	23	123190070	Frame_Shift_Del	DEL	A	TCGA-GL-A4EM-01A-11D-A25F-10	12202173	123190070	32080490	91	38003											
OCRL	4952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	128678970	128678970	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	G	128678970	T	G	128678970	3	3	640	1	0	0	0	0	1	0	0	0	10830	1725	60	5	165	5	OCRL	23	128678970	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	5488900	128678970	26591590	92	38004											
GRIK3	2899	broad.mit.edu	37	1	37271815	37271815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	37271815	G	A	37271815	3	1	641	1	0	0	0	0	1	0	0	0	6782	1087	38	1	567	1	GRIK3	1	37271815	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		37271815	211978806	1	38005											
TTC4	7268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	55183223	55183223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	55183223	G	C	55183223	3	2	641	1	0	0	0	0	1	0	0	0	16722	933	33	4	298	4	TTC4	1	55183223	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	17911408	55183223	194067398	2	38006											
ALG6	29929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	63868011	63868011	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	63868011	A	-	63868011	7	5	641	1	0	1	0	1	0	0	0	0	522	449	16	0	264	0	ALG6	1	63868011	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10	8684788	63868011	185382610	3	38007											
CHD1L	9557	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	146747123	146747123	+	Silent	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	146747123	C	A	146747123	2	1	641	1	0	0	0	0	0	0	0	1	3326	726	26	4		4	CHD1L	1	146747123	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	82879112	146747123	102503498	4	38008											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155313421	155313421	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	155313421	G	A	155313421	2	1	641	1	0	0	0	0	0	0	0	1	1041	1306	46	2		2	ASH1L	1	155313421	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	8566298	155313421	93937200	5	38009											
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156107474	156107474	+	Silent	SNP	A	A	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	156107474	A	C	156107474	2	2	641	1	0	0	0	0	0	0	0	1	8855	175	7	5		5	LMNA	1	156107474	Silent	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	794053	156107474	93143147	6	38010											
NFASC	23114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204948503	204948504	+	Missense_Mutation	DNP	GT	GT	AG	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	AG	204948504	GT	AG	204948503	3	1	641	1	0	0	0	0	1	0	0	0	10366	1020	36	2	2142	2	NFASC	1	204948503	Missense_Mutation	DNP	GT	TCGA-GL-A59R-01A-11D-A26P-10	48841029	204948503	44302118	7	38011											
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	30987162	30987162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	30987162	A	G	30987162	3	3	641	1	0	0	0	0	1	0	0	0	2628	333	12	3	1542	3	CAPN13	2	30987162	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10		30987162	212212211	8	38012											
MAP4K3	8491	ucsc.edu;bcgsc.ca	37	2	39553361	39553361	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	39553361	A	T	39553361	3	4	641	1	0	0	0	0	1	0	0	0	9268	330	12	5	2200	5	MAP4K3	2	39553361	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	8566199	39553361	203646012	9	38013											
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61705989	61705989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	61705989	T	C	61705989	3	2	641	1	0	0	0	0	1	0	0	0	17457	1493	52	3	37	3	XPO1	2	61705989	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	22152628	61705989	181493384	10	38014											
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62067237	62067237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	62067237	T	C	62067237	3	2	641	1	0	0	0	0	1	0	0	0	5476	1609	56	3	1096	3	FAM161A	2	62067237	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	361248	62067237	181132136	11	38015											
RTKN	6242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74656034	74656034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	74656034	A	G	74656034	3	3	641	1	0	0	0	0	1	0	0	0	13735	304	11	3	924	3	RTKN	2	74656034	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	12588797	74656034	168543339	12	38016											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	84846836	84846836	+	Silent	SNP	T	T	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	84846836	T	G	84846836	2	3	641	1	0	0	0	0	0	0	0	1	4607	1770	62	5		5	DNAH6	2	84846836	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	10190802	84846836	158352537	13	38017											
DNAH6	1768	broad.mit.edu	37	2	84896615	84896615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	84896615	G	A	84896615	3	1	641	1	0	0	0	0	1	0	0	0	4607	1174	41	2	6433	2	DNAH6	2	84896615	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	49779	84896615	158302758	14	38018											
NEB	4703	hgsc.bcm.edu;bcgsc.ca	37	2	152390040	152390040	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	152390040	G	T	152390040	2	4	641	1	0	0	0	0	0	0	0	1	10309	1335	47	4		4	NEB	2	152390040	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	67493425	152390040	90809333	15	38019											
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152536245	152536245	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	152536245	G	C	152536245	3	2	641	1	0	0	0	0	1	0	0	0	10309	1087	38	4	23045	4	NEB	2	152536245	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	146205	152536245	90663128	16	38020											
AGPS	8540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	178257747	178257747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	178257747	C	T	178257747	3	4	641	1	0	0	0	0	1	0	0	0	394	768	27	1	232	1	AGPS	2	178257747	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	25721502	178257747	64941626	17	38021											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179598544	179598545	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	CA	179598545	AC	CA	179598544	3	2	641	1	0	0	0	0	1	0	0	0	16747	159	6	5	89197	5	TTN	2	179598544	Missense_Mutation	DNP	AC	TCGA-GL-A59R-01A-11D-A26P-10	1340797	179598544	63600829	18	38022											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	186672719	186672719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	186672719	T	C	186672719	3	2	641	1	0	0	0	0	1	0	0	0	6082	1493	52	3	19019	3	FSIP2	2	186672719	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	7074175	186672719	56526654	19	38023											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198265131	198265131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	198265131	T	C	198265131	3	2	641	1	0	0	0	0	1	0	0	0	14162	1696	59	3	1196	3	SF3B1	2	198265131	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	11592412	198265131	44934242	20	38024											
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14559362	14559362	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	14559362	G	A	14559362	2	1	641	1	0	0	0	0	0	0	0	1	6795	1079	38	1		1	GRIP2	3	14559362	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		14559362	183463068	21	38025											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38966961	38966961	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	38966961	C	G	38966961	3	3	641	1	0	0	0	0	1	0	0	0	13926	709	25	4	4806	4	SCN11A	3	38966961	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	24407599	38966961	159055469	22	38026											
NME6	10201	ucsc.edu	37	3	48338260	48338260	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	48338260	C	T	48338260	2	4	641	1	0	0	0	0	0	0	0	1	10502	465	17	2		2	NME6	3	48338260	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	9371299	48338260	149684170	23	38027											
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48465285	48465285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	48465285	C	T	48465285	3	4	641	1	0	0	0	0	1	0	0	0	12130	710	25	2	5815	2	PLXNB1	3	48465285	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	127025	48465285	149557145	24	38028											
CACNA2D2	9254	broad.mit.edu;bcgsc.ca	37	3	50513567	50513567	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	50513567	G	T	50513567	2	4	641	1	0	0	0	0	0	0	0	1	2551	1074	38	4		4	CACNA2D2	3	50513567	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	2048282	50513567	147508863	25	38029											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52505969	52505969	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	52505969	C	T	52505969	2	4	641	1	0	0	0	0	0	0	0	1	10439	825	29	2		2	NISCH	3	52505969	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	1992402	52505969	145516461	26	38030											
DNAJC13	23317	bcgsc.ca	37	3	132196969	132196969	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	132196969	T	C	132196969	2	2	641	1	0	0	0	0	0	0	0	1	4634	1800	63	3		3	DNAJC13	3	132196969	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	79691000	132196969	65825461	27	38031											
SKIL	6498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	170078913	170078913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	170078913	A	T	170078913	3	4	641	1	0	0	0	0	1	0	0	0	14371	304	11	5	796	5	SKIL	3	170078913	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	37881944	170078913	27943517	28	38032											
LRPAP1	4043	broad.mit.edu;bcgsc.ca	37	4	3534063	3534077	+	In_Frame_Del	DEL	CAGGGCCCGAGGAAG	CAGGGCCCGAGGAAG	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CAGGGCCCGAGGAAG	CAGGGCCCGAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	3534077	CAGGGCCCGAGGAAG	-	3534063	7	5	641	1	0	1	0	1	0	0	0	0	8971	595	21	0	1028	0	LRPAP1	4	3534063	In_Frame_Del	DEL	CAGGGCCCGAGGAAG	TCGA-GL-A59R-01A-11D-A26P-10		3534063	187620213	29	38033											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71629308	71629308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	71629308	G	A	71629308	3	1	641	1	0	0	0	0	1	0	0	0	13753	1232	43	2	764	2	RUFY3	4	71629308	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	68095245	71629308	119524968	30	38034											
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	88536953	G	A	88536953	3	1	641	1	0	0	0	0	1	0	0	0	4784	1058	37	1	3153	1	DSPP	4	88536953	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	16907645	88536953	102617323	31	38035											
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	6600168	6600168	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	6600168	G	A	6600168	2	1	641	1	0	0	0	0	0	0	0	1	10685	1103	39	1		1	NSUN2	5	6600168	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		6600168	174315092	32	38036											
FASTKD3	79072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7867451	7867451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	7867451	T	C	7867451	3	2	641	1	0	0	0	0	1	0	0	0	5694	1783	62	3	1266	3	FASTKD3	5	7867451	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	1267283	7867451	173047809	33	38037											
DNAH5	1767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13814812	13814812	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	13814812	C	A	13814812	4	1	641	1	0	0	0	0	0	1	0	0	4606	893	31	4	6890	4	DNAH5	5	13814812	Nonsense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	5947361	13814812	167100448	34	38038											
ANKHD1	54882	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139906526	139906526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	139906526	G	A	139906526	3	1	641	1	0	0	0	0	1	0	0	0	628	1029	36	2	5166	2	ANKHD1	5	139906526	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	126091714	139906526	41008734	35	38039											
PCDHB10	56126	bcgsc.ca	37	5	140573408	140573411	+	Frame_Shift_Del	DEL	CACC	CACC	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CACC	CACC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	140573411	CACC	-	140573408	7	5	641	1	0	1	0	1	0	0	0	0	11542	478	17	0	1285	0	PCDHB10	5	140573408	Frame_Shift_Del	DEL	CACC	TCGA-GL-A59R-01A-11D-A26P-10	666882	140573408	40341852	36	38040	488	3									
PCDHB10	56126	hgsc.bcm.edu	37	5	140573409	140573413	+	Frame_Shift_Del	DEL	ACCCA	ACCCA	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	ACCCA	ACCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	140573413	ACCCA	-	140573409	7	5	641	1	0	1	0	1	0	0	0	0	11542	146	6	0	1286	0	PCDHB10	5	140573409	Frame_Shift_Del	DEL	ACCCA	TCGA-GL-A59R-01A-11D-A26P-10	1	140573409	40341851	37	38041	488	3									
PCDHB10	56126	bcgsc.ca	37	5	140573413	140573413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	140573413	A	T	140573413	3	4	641	1	0	0	0	0	1	0	0	0	11542	179	7	5	1290	5	PCDHB10	5	140573413	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	4	140573413	40341847	38	38042	488	3									
PHACTR1	221692	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	13230366	13230366	+	Silent	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	13230366	C	A	13230366	2	1	641	1	0	0	0	0	0	0	0	1	11816	581	21	4		4	PHACTR1	6	13230366	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10		13230366	157884701	39	38043											
DPCR1	135656	ucsc.edu;bcgsc.ca	37	6	30917934	30917934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	30917934	A	G	30917934	3	3	641	1	0	0	0	0	1	0	0	0	4714	179	7	3	1699	3	DPCR1	6	30917934	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	17687568	30917934	140197133	40	38044											
MUC21	394263	bcgsc.ca	37	6	30954603	30954603	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	30954603	G	A	30954603	2	1	641	1	0	0	0	0	0	0	0	1	9984	1045	37	1		1	MUC21	6	30954603	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	36669	30954603	140160464	41	38045											
DOM3Z	1797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31938842	31938842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	31938842	C	T	31938842	3	4	641	1	0	0	0	0	1	0	0	0	4707	864	30	2	771	2	DOM3Z	6	31938842	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	984239	31938842	139176225	42	38046											
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49753793	49753793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	49753793	C	G	49753793	3	3	641	1	0	0	0	0	1	0	0	0	11798	478	17	4	149	4	PGK2	6	49753793	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	17814951	49753793	121361274	43	38047											
MDN1	23195	broad.mit.edu	37	6	90466095	90466095	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	90466095	T	-	90466095	7	5	641	1	0	1	0	1	0	0	0	0	9422	1406	49	0	14405	0	MDN1	6	90466095	Frame_Shift_Del	DEL	T	TCGA-GL-A59R-01A-11D-A26P-10	40712302	90466095	80648972	44	38048											
TRAF3IP2	10758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	111912891	111912891	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	111912891	A	-	111912891	7	5	641	1	0	1	0	1	0	0	0	0	16453	359	13	0	1330	0	TRAF3IP2	6	111912891	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10	21446796	111912891	59202176	45	38049											
ABCA13	154664	bcgsc.ca	37	7	48685099	48685099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	48685099	G	T	48685099	3	4	641	1	0	0	0	0	1	0	0	0	31	1310	46	4	15243	4	ABCA13	7	48685099	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		48685099	110453564	46	38050											
GIGYF1	64599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100279805	100279805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	100279805	C	T	100279805	3	4	641	1	0	0	0	0	1	0	0	0	6384	884	31	1	304	1	GIGYF1	7	100279805	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	51594706	100279805	58858858	47	38051											
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	114302186	114302186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	114302186	G	A	114302186	3	1	641	1	0	0	0	0	1	0	0	0	6034	1029	36	2	1931	2	FOXP2	7	114302186	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	14022381	114302186	44836477	48	38052											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116415114	116415115	+	Missense_Mutation	DNP	GT	GT	AG	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	AG	116415115	GT	AG	116415114	3	1	641	1	0	0	0	0	1	0	0	0	9492	1029	36	2	3316	2	MET	7	116415114	Missense_Mutation	DNP	GT	TCGA-GL-A59R-01A-11D-A26P-10	2112928	116415114	42723549	49	38053											
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121717970	121717971	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	AG	121717971	CA	AG	121717970	3	1	641	1	0	0	0	0	1	0	0	0	24	594	21	4	204	4	AASS	7	121717970	Missense_Mutation	DNP	CA	TCGA-GL-A59R-01A-11D-A26P-10	5302856	121717970	37420693	50	38054											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138566237	138566237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	138566237	G	T	138566237	3	4	641	1	0	0	0	0	1	0	0	0	8251	1203	42	4	1766	4	KIAA1549	7	138566237	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	16848267	138566237	20572426	51	38055											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41547822	41547822	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	41547822	G	A	41547822	2	1	641	1	0	0	0	0	0	0	0	1	620	933	33	2		2	ANK1	8	41547822	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		41547822	104816200	52	38056											
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	81412103	81412103	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	81412103	T	C	81412103	2	2	641	1	0	0	0	0	0	0	0	1	17535	1693	59	3		3	ZBTB10	8	81412103	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	39864281	81412103	64951919	53	38057											
WWP1	11059	broad.mit.edu;bcgsc.ca	37	8	87447714	87447715	+	Frame_Shift_Ins	INS	-	-	AATTTTT	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	AATTTTT	87447715	-	AATTTTT	87447714	7	5	641	1	0	1	1	0	0	0	0	0	17427	755	27	0	1685	0	WWP1	8	87447714	Frame_Shift_Ins	INS	-	TCGA-GL-A59R-01A-11D-A26P-10	6035611	87447714	58916308	54	38058	489	2									
WWP1	11059	bcgsc.ca	37	8	87447715	87447715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	87447715	G	T	87447715	3	4	641	1	0	0	0	0	1	0	0	0	17427	1116	39	4	1686	4	WWP1	8	87447715	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	1	87447715	58916307	55	38059	489	2									
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	5078361	5078361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	5078361	G	T	5078361	3	4	641	1	0	0	0	0	1	0	0	0	7945	942	33	4	2102	4	JAK2	9	5078361	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		5078361	136135070	56	38060											
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	32459420	32459420	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	32459420	G	T	32459420	4	4	641	1	0	0	0	0	0	1	0	0	4377	1311	46	4	355	4	DDX58	9	32459420	Nonsense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	27381059	32459420	108754011	57	38061											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79820297	79820297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	79820297	A	G	79820297	3	3	641	1	0	0	0	0	1	0	0	0	17201	101	4	3	270	3	VPS13A	9	79820297	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	47360877	79820297	61393134	58	38062											
CTSL2	1515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	99799669	99799669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	99799669	T	G	99799669	3	3	641	1	0	0	0	0	1	0	0	0	4041	1490	52	5	763	5	CTSL2	9	99799669	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	19979372	99799669	41413762	59	38063											
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	12162862	12162863	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	12162863	-	T	12162862	7	5	641	1	0	1	1	0	0	0	0	0	4502	333	12	0	2801	0	DHTKD1	10	12162862	Frame_Shift_Ins	INS	-	TCGA-GL-A59R-01A-11D-A26P-10		12162862	123371885	60	38064											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64968540	64968540	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	64968540	A	G	64968540	2	3	641	1	0	0	0	0	0	0	0	1	7957	359	13	3		3	JMJD1C	10	64968540	Silent	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	52805678	64968540	70566207	61	38065											
P4HA1	5033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74810906	74810906	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	74810906	G	A	74810906	4	1	641	1	0	0	0	0	0	1	0	0	11363	1299	45	2	910	2	P4HA1	10	74810906	Nonsense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	9842366	74810906	60723841	62	38066											
FAM35A	54537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88911776	88911776	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	88911776	C	G	88911776	4	3	641	1	0	0	0	0	0	1	0	0	5560	838	29	4	667	4	FAM35A	10	88911776	Nonsense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	14100870	88911776	46622971	63	38067											
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	115947630	115947635	+	In_Frame_Del	DEL	AATTTG	AATTTG	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	AATTTG	AATTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	115947635	AATTTG	-	115947630	7	5	641	1	0	1	0	1	0	0	0	0	15742	362	13	0	42	0	TDRD1	10	115947630	In_Frame_Del	DEL	AATTTG	TCGA-GL-A59R-01A-11D-A26P-10	27035854	115947630	19587117	64	38068											
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	44079985	44079985	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	44079985	C	T	44079985	2	4	641	1	0	0	0	0	0	0	0	1	134	900	32	2		2	ACCSL	11	44079985	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10		44079985	90926531	65	38069											
CNTF	1270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	58391968	58391968	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	58391968	T	-	58391968	7	5	641	1	0	1	0	1	0	0	0	0	3639	1490	52	0	582	0	CNTF	11	58391968	Frame_Shift_Del	DEL	T	TCGA-GL-A59R-01A-11D-A26P-10	14311983	58391968	76614548	66	38070											
RELA	5970	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	65425828	65425840	+	Frame_Shift_Del	DEL	GGAGACACGCACA	GGAGACACGCACA	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GGAGACACGCACA	GGAGACACGCACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	65425840	GGAGACACGCACA	-	65425828	7	5	641	1	0	1	0	1	0	0	0	0	13229	1335	47	0	864	0	RELA	11	65425828	Frame_Shift_Del	DEL	GGAGACACGCACA	TCGA-GL-A59R-01A-11D-A26P-10	7033860	65425828	69580688	67	38071											
TSKU	25987	broad.mit.edu;bcgsc.ca	37	11	76507649	76507654	+	In_Frame_Del	DEL	GCTCCA	GCTCCA	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GCTCCA	GCTCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	76507654	GCTCCA	-	76507649	7	5	641	1	0	1	0	1	0	0	0	0	16639	1203	42	0	991	0	TSKU	11	76507649	In_Frame_Del	DEL	GCTCCA	TCGA-GL-A59R-01A-11D-A26P-10	11081821	76507649	58498867	68	38072											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108381026	108381026	+	Silent	SNP	T	T	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	108381026	T	G	108381026	2	3	641	1	0	0	0	0	0	0	0	1	5324	1451	51	5		5	EXPH5	11	108381026	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	31873377	108381026	26625490	69	38073											
MCAM	4162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119182661	119182661	+	Splice_Site	SNP	T	T	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	119182661	T	A	119182661	5	1	641	1	0	0	0	0	0	0	1	0	9375	1594	55	5	826	5	MCAM	11	119182661	Splice_Site	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	10801635	119182661	15823855	70	38074											
SLC2A14	144195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7984344	7984344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	7984344	A	T	7984344	3	4	641	1	0	0	0	0	1	0	0	0	14556	333	12	5	1397	5	SLC2A14	12	7984344	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10		7984344	125867551	71	38075											
BCL2L14	79370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	12247627	12247628	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	12247628	CT	-	12247627	7	5	641	1	0	1	0	1	0	0	0	0	1372	564	20	0	807	0	BCL2L14	12	12247627	Frame_Shift_Del	DEL	CT	TCGA-GL-A59R-01A-11D-A26P-10	4263283	12247627	121604268	72	38076											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12274330	12274330	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	12274330	G	C	12274330	3	2	641	1	0	0	0	0	1	0	0	0	8969	1020	36	4	273	4	LRP6	12	12274330	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	26703	12274330	121577565	73	38077											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46244883	46244883	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	46244883	A	T	46244883	3	4	641	1	0	0	0	0	1	0	0	0	915	391	14	5	3035	5	ARID2	12	46244883	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	33970553	46244883	87607012	74	38078											
KRT6B	3854	broad.mit.edu;bcgsc.ca	37	12	52845508	52845508	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	52845508	C	G	52845508	3	3	641	1	0	0	0	0	1	0	0	0	8488	710	25	4	1375	4	KRT6B	12	52845508	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	6600625	52845508	81006387	75	38079											
SRGAP1	57522	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64521384	64521384	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	64521384	C	G	64521384	4	3	641	1	0	0	0	0	0	1	0	0	15157	838	29	4	2498	4	SRGAP1	12	64521384	Nonsense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	11675876	64521384	69330511	76	38080											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	78591182	78591182	+	Splice_Site	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	78591182	G	C	78591182	5	2	641	1	0	0	0	0	0	0	1	0	10192	1275	44	4	6515	4	NAV3	12	78591182	Splice_Site	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	14069798	78591182	55260713	77	38081											
UBE2N	7334	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	93804921	93804921	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	93804921	T	A	93804921	3	1	641	1	0	0	0	0	1	0	0	0	16878	1638	57	5	285	5	UBE2N	12	93804921	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	15213739	93804921	40046974	78	38082											
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111926345	111926345	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	111926345	A	G	111926345	2	3	641	1	0	0	0	0	0	0	0	1	1211	233	9	3		3	ATXN2	12	111926345	Silent	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	18121424	111926345	21925550	79	38083											
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120158284	120158284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	120158284	T	C	120158284	3	2	641	1	0	0	0	0	1	0	0	0	3440	1623	56	3	2446	3	CIT	12	120158284	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	8231939	120158284	13693611	80	38084											
TDRD3	81550	broad.mit.edu	37	13	61060035	61060035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	61060035	G	A	61060035	3	1	641	1	0	0	0	0	1	0	0	0	15744	1291	45	2	696	2	TDRD3	13	61060035	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		61060035	54109843	81	38085											
AP1G2	8906	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24030557	24030557	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	24030557	T	C	24030557	2	2	641	1	0	0	0	0	0	0	0	1	733	1567	55	3		3	AP1G2	14	24030557	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10		24030557	83318983	82	38086											
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61186919	61186919	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	61186919	T	A	61186919	3	1	641	1	0	0	0	0	1	0	0	0	14362	1406	49	5	1245	5	SIX4	14	61186919	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	37156362	61186919	46162621	83	38087											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67647539	67647539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	67647539	G	A	67647539	3	1	641	1	0	0	0	0	1	0	0	0	6617	1145	40	1	2285	1	GPHN	14	67647539	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	6460620	67647539	39702001	84	38088											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	89171882	89171883	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	89171883	-	T	89171882	7	5	641	1	0	1	1	0	0	0	0	0	5102	478	17	0	4185	0	EML5	14	89171882	Frame_Shift_Ins	INS	-	TCGA-GL-A59R-01A-11D-A26P-10	21524343	89171882	18177658	85	38089											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	34130027	34130027	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	34130027	A	-	34130027	7	5	641	1	0	1	0	1	0	0	0	0	13783	246	9	0	12200	0	RYR3	15	34130027	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10		34130027	68401365	86	38090											
CASKIN1	57524	hgsc.bcm.edu;bcgsc.ca	37	16	2239295	2239295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	2239295	C	A	2239295	3	1	641	1	0	0	0	0	1	0	0	0	2668	507	18	4	3929	4	CASKIN1	16	2239295	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10		2239295	88115458	87	38091											
ACSM1	116285	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20681301	20681301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	20681301	A	T	20681301	3	4	641	1	0	0	0	0	1	0	0	0	182	98	4	5	1009	5	ACSM1	16	20681301	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	18442006	20681301	69673452	88	38092											
TMEM159	57146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21185458	21185458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	21185458	G	C	21185458	3	2	641	1	0	0	0	0	1	0	0	0	16086	1270	44	4	403	4	TMEM159	16	21185458	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	504157	21185458	69169295	89	38093											
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21214557	21214557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	21214557	G	T	21214557	3	4	641	1	0	0	0	0	1	0	0	0	18228	991	35	4	1289	4	ZP2	16	21214557	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	29099	21214557	69140196	90	38094											
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30976286	30976286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	30976286	C	A	30976286	3	1	641	1	0	0	0	0	1	0	0	0	14143	913	32	4	1245	4	SETD1A	16	30976286	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	9761729	30976286	59378467	91	38095											
ATP6V0D1	9114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67487539	67487539	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	67487539	G	A	67487539	2	1	641	1	0	0	0	0	0	0	0	1	1173	1048	37	1		1	ATP6V0D1	16	67487539	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	36511253	67487539	22867214	92	38096											
THAP11	57215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	67876718	67876718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	67876718	G	T	67876718	3	4	641	1	0	0	0	0	1	0	0	0	15855	962	34	4	263	4	THAP11	16	67876718	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	389179	67876718	22478035	93	38097											
TBC1D26	353149	broad.mit.edu	37	17	15641610	15641610	+	Missense_Mutation	SNP	A	A	G	rs202131240		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	15641610	A	G	15641610	3	3	641	1	0	0	0	0	1	0	0	0	15628	391	14	3	314	3	TBC1D26	17	15641610	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10		15641610	65553600	94	38098											
LGALS9	3965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	25967635	25967635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	25967635	G	A	25967635	3	1	641	1	0	0	0	0	1	0	0	0	8755	1290	45	2	179	2	LGALS9	17	25967635	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	10326025	25967635	55227575	95	38099											
SMARCD2	6603	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61910338	61910338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	61910338	C	A	61910338	3	1	641	1	0	0	0	0	1	0	0	0	14791	681	24	4	43	4	SMARCD2	17	61910338	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	35942703	61910338	19284872	96	38100											
WIPI1	55062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66440668	66440668	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	66440668	C	T	66440668	2	4	641	1	0	0	0	0	0	0	0	1	17382	825	29	2		2	WIPI1	17	66440668	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	4530330	66440668	14754542	97	38101											
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	20562277	20562277	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	20562277	G	A	20562277	2	1	641	1	0	0	0	0	0	0	0	1	13118	1190	42	2		2	RBBP8	18	20562277	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		20562277	57514971	98	38102											
REXO1	57455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1817252	1817252	+	Missense_Mutation	SNP	G	G	C	rs200984356		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	C	1817252	G	C	1817252	3	2	641	1	0	0	0	0	1	0	0	0	13254	1261	44	4	518	4	REXO1	19	1817252	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		1817252	57311731	99	38103											
LIPE	3991	broad.mit.edu;bcgsc.ca	37	19	42911843	42911843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	42911843	G	T	42911843	3	4	641	1	0	0	0	0	1	0	0	0	8828	1145	40	4	1497	4	LIPE	19	42911843	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	41094591	42911843	16217140	100	38104											
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49714007	49714007	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	49714007	G	T	49714007	2	4	641	1	0	0	0	0	0	0	0	1	16600	1132	40	4		4	TRPM4	19	49714007	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	6802164	49714007	9414976	101	38105											
SIGLEC10	89790	broad.mit.edu;bcgsc.ca	37	19	51918318	51918318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	51918318	C	G	51918318	3	3	641	1	0	0	0	0	1	0	0	0	14319	623	22	4	734	4	SIGLEC10	19	51918318	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	2204311	51918318	7210665	102	38106											
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54669261	54669261	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	54669261	G	T	54669261	2	4	641	1	0	0	0	0	0	0	0	1	15999	1103	39	4		4	TMC4	19	54669261	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	2750943	54669261	4459722	103	38107											
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	47705894	47705895	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	TT	47705895	-	TT	47705894	7	5	641	1	0	1	1	0	0	0	0	0	3932	1368	48	0	1998	0	CSE1L	20	47705894	Frame_Shift_Ins	INS	-	TCGA-GL-A59R-01A-11D-A26P-10		47705894	15319626	104	38108											
CASS4	57091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	55033659	55033659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	55033659	C	A	55033659	3	1	641	1	0	0	0	0	1	0	0	0	2685	506	18	4	2239	4	CASS4	20	55033659	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	7327765	55033659	7991861	105	38109											
SLCO4A1	28231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61300283	61300283	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	61300283	G	A	61300283	2	1	641	1	0	0	0	0	0	0	0	1	14742	1246	43	2		2	SLCO4A1	20	61300283	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	6266624	61300283	1725237	106	38110											
KRTAP19-7	337974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	31933587	31933587	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	31933587	A	-	31933587	7	5	641	1	0	1	0	1	0	0	0	0	8541	420	15	0	172	0	KRTAP19-7	21	31933587	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10		31933587	16196308	107	38111											
UMODL1	89766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43547904	43547904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	T	43547904	G	T	43547904	3	4	641	1	0	0	0	0	1	0	0	0	16992	1087	38	4	4111	4	UMODL1	21	43547904	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	11614317	43547904	4581991	108	38112											
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46875643	46875643	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	G	46875643	C	G	46875643	3	3	641	1	0	0	0	0	1	0	0	0	3677	643	23	4	315	4	COL18A1	21	46875643	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	3327739	46875643	1254252	109	38113											
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	17488934	17488934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	A	17488934	G	A	17488934	3	1	641	1	0	0	0	0	1	0	0	0	6158	1059	37	1	1693	1	GAB4	22	17488934	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		17488934	33815632	110	38114											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41558757	41558757	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	-	41558757	A	-	41558757	7	5	641	1	0	1	0	1	0	0	0	0	5150	243	9	0	3784	0	EP300	22	41558757	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10	24069823	41558757	9745809	111	38115											
PADI4	23569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17674521	17674521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	17674521	A	T	17674521	3	4	642	1	0	0	0	0	1	0	0	0	11387	304	11	5	1171	5	PADI4	1	17674521	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		17674521	231576100	1	38116											
RWDD3	25950	ucsc.edu;bcgsc.ca	37	1	95710051	95710051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	95710051	A	T	95710051	3	4	642	1	0	0	0	0	1	0	0	0	13770	188	7	5	376	5	RWDD3	1	95710051	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	78035530	95710051	153540570	2	38117											
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99764611	99764611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	99764611	T	C	99764611	3	2	642	1	0	0	0	0	1	0	0	0	8934	1464	51	3	573	3	LPPR4	1	99764611	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	4054560	99764611	149486010	3	38118											
NUP210L	91181	bcgsc.ca	37	1	154033034	154033034	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	154033034	T	C	154033034	2	2	642	1	0	0	0	0	0	0	0	1	10768	1606	56	3		3	NUP210L	1	154033034	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	54268423	154033034	95217587	4	38119	490	2									
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154033038	154033049	+	In_Frame_Del	DEL	ATGTAAGTGATG	ATGTAAGTGATG	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	ATGTAAGTGATG	ATGTAAGTGATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	154033049	ATGTAAGTGATG	-	154033038	7	5	642	1	0	1	0	1	0	0	0	0	10768	217	8	0	2922	0	NUP210L	1	154033038	In_Frame_Del	DEL	ATGTAAGTGATG	TCGA-GL-A59T-01A-21D-A28G-10	4	154033038	95217583	5	38120	490	2									
KCNN3	3782	hgsc.bcm.edu	37	1	154842253	154842253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	154842253	G	T	154842253	3	4	642	1	0	0	0	0	1	0	0	0	8087	1000	35	4	2061	4	KCNN3	1	154842253	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	809215	154842253	94408368	6	38121											
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155172114	155172114	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	155172114	G	A	155172114	4	1	642	1	0	0	0	0	0	1	0	0	15867	1066	37	1	1894	1	THBS3	1	155172114	Nonsense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	329861	155172114	94078507	7	38122											
NIT1	4817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161089159	161089159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	161089159	G	A	161089159	3	1	642	1	0	0	0	0	1	0	0	0	10440	943	33	2	401	2	NIT1	1	161089159	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	5917045	161089159	88161462	8	38123											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	176525851	176525851	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	176525851	G	A	176525851	2	1	642	1	0	0	0	0	0	0	0	1	11440	1219	43	2		2	PAPPA2	1	176525851	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	15436692	176525851	72724770	9	38124											
SYT2	127833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	202566051	202566052	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	202566052	AG	-	202566051	7	5	642	1	0	1	0	1	0	0	0	0	15486	188	7	0	169	0	SYT2	1	202566051	Frame_Shift_Del	DEL	AG	TCGA-GL-A59T-01A-21D-A28G-10	26040200	202566051	46684570	10	38125											
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247053281	247053281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	247053281	C	T	247053281	3	4	642	1	0	0	0	0	1	0	0	0	408	835	29	2	4749	2	AHCTF1	1	247053281	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	44487230	247053281	2197340	11	38126											
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	25505312	25505312	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	25505312	G	-	25505312	7	5	642	1	0	1	0	1	0	0	0	0	4678	1087	38	0	2505	0	DNMT3A	2	25505312	Frame_Shift_Del	DEL	G	TCGA-GL-A59T-01A-21D-A28G-10		25505312	217694061	12	38127											
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113089251	113089251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	113089251	G	C	113089251	3	2	642	1	0	0	0	0	1	0	0	0	17583	1029	36	4	2802	4	ZC3H6	2	113089251	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	87583939	113089251	130110122	13	38128											
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163046173	163046173	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	163046173	A	G	163046173	2	3	642	1	0	0	0	0	0	0	0	1	5680	214	8	3		3	FAP	2	163046173	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	49956922	163046173	80153200	14	38129											
LRP2	4036	broad.mit.edu	37	2	170096143	170096143	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	170096143	A	-	170096143	7	5	642	1	0	1	0	1	0	0	0	0	8963	242	9	0	9995	0	LRP2	2	170096143	Frame_Shift_Del	DEL	A	TCGA-GL-A59T-01A-21D-A28G-10	7049970	170096143	73103230	15	38130											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216232592	216232592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	216232592	A	G	216232592	3	3	642	1	0	0	0	0	1	0	0	0	5969	246	9	3	441	3	FN1	2	216232592	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	46136449	216232592	26966781	16	38131											
CHPF	79586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220406754	220406754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	220406754	G	A	220406754	3	1	642	1	0	0	0	0	1	0	0	0	3370	1115	39	1	1867	1	CHPF	2	220406754	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	4174162	220406754	22792619	17	38132											
EFHD1	80303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	233498655	233498656	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	AC	233498656	-	AC	233498655	7	5	642	1	0	1	1	0	0	0	0	0	4950	1522	53	0	243	0	EFHD1	2	233498655	Frame_Shift_Ins	INS	-	TCGA-GL-A59T-01A-21D-A28G-10	13091901	233498655	9700718	18	38133											
HJURP	55355	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234749356	234749356	+	Silent	SNP	G	G	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	234749356	G	C	234749356	2	2	642	1	0	0	0	0	0	0	0	1	7196	958	34	4		4	HJURP	2	234749356	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	1250701	234749356	8450017	19	38134											
CNTN4	152330	broad.mit.edu	37	3	3080674	3080675	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	TA	3080675	-	TA	3080674	7	5	642	1	0	1	1	0	0	0	0	0	3645	1725	60	0	2212	0	CNTN4	3	3080674	Frame_Shift_Ins	INS	-	TCGA-GL-A59T-01A-21D-A28G-10		3080674	194941756	20	38135											
FBXL2	25827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33415410	33415410	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	33415410	C	T	33415410	2	4	642	1	0	0	0	0	0	0	0	1	5723	805	28	2		2	FBXL2	3	33415410	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	30334736	33415410	164607020	21	38136											
CCDC66	285331	broad.mit.edu	37	3	56649978	56649978	+	Silent	SNP	A	A	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	56649978	A	C	56649978	2	2	642	1	0	0	0	0	0	0	0	1	2840	204	8	5		5	CCDC66	3	56649978	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	23234568	56649978	141372452	22	38137											
QTRTD1	79691	broad.mit.edu	37	3	113795754	113795754	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	113795754	A	G	113795754	2	3	642	1	0	0	0	0	0	0	0	1	12899	204	8	3		3	QTRTD1	3	113795754	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	57145776	113795754	84226676	23	38138											
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122437696	122437696	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	122437696	A	G	122437696	2	3	642	1	0	0	0	0	0	0	0	1	11465	175	7	3		3	PARP14	3	122437696	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	8641942	122437696	75584734	24	38139											
UBA5	79876	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132379518	132379518	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	132379518	A	T	132379518	3	4	642	1	0	0	0	0	1	0	0	0	16842	304	11	5	139	5	UBA5	3	132379518	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	9941822	132379518	65642912	25	38140											
STAG1	10274	broad.mit.edu	37	3	136183765	136183765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	136183765	T	C	136183765	3	2	642	1	0	0	0	0	1	0	0	0	15254	1464	51	3	2593	3	STAG1	3	136183765	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	3804247	136183765	61838665	26	38141											
SMC4	10051	bcgsc.ca	37	3	160119803	160119803	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	160119803	T	C	160119803	2	2	642	1	0	0	0	0	0	0	0	1	14798	1538	54	3		3	SMC4	3	160119803	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	23936038	160119803	37902627	27	38142											
NDUFB5	4711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179322636	179322636	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	179322636	G	A	179322636	2	1	642	1	0	0	0	0	0	0	0	1	10291	1103	39	1		1	NDUFB5	3	179322636	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	19202833	179322636	18699794	28	38143											
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183226047	183226047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	183226047	C	T	183226047	3	4	642	1	0	0	0	0	1	0	0	0	8400	835	29	2	1176	2	KLHL6	3	183226047	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	3903411	183226047	14796383	29	38144											
TMPRSS11F	389208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68930403	68930403	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	68930403	C	A	68930403	4	1	642	1	0	0	0	0	0	1	0	0	16255	608	21	4	313	4	TMPRSS11F	4	68930403	Nonsense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		68930403	122223873	30	38145											
WWC2	80014	broad.mit.edu;bcgsc.ca	37	4	184129218	184129218	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	184129218	C	T	184129218	2	4	642	1	0	0	0	0	0	0	0	1	17424	518	18	2		2	WWC2	4	184129218	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	115198815	184129218	7025058	31	38146											
CASP3	836	broad.mit.edu	37	4	185552222	185552222	+	Silent	SNP	G	G	T	rs200014759	alternate_allele	TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	185552222	G	T	185552222	2	4	642	1	0	0	0	0	0	0	0	1	2674	1103	39	4		4	CASP3	4	185552222	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	1423004	185552222	5602054	32	38147											
FAT1	2195	bcgsc.ca	37	4	187628814	187628818	+	Frame_Shift_Del	DEL	CCAGT	CCAGT	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	CCAGT	CCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	187628818	CCAGT	-	187628814	7	5	642	1	0	1	0	1	0	0	0	0	5696	507	18	0	11702	0	FAT1	4	187628814	Frame_Shift_Del	DEL	CCAGT	TCGA-GL-A59T-01A-21D-A28G-10	2076592	187628814	3525462	33	38148											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1093744	1093744	+	Silent	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	1093744	C	A	1093744	2	1	642	1	0	0	0	0	0	0	0	1	14401	465	17	4		4	SLC12A7	5	1093744	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		1093744	179821516	34	38149											
LOX	4015	broad.mit.edu	37	5	121412648	121412648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	121412648	T	C	121412648	3	2	642	1	0	0	0	0	1	0	0	0	8905	1638	57	3	597	3	LOX	5	121412648	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	120318904	121412648	59502612	35	38150											
RBM27	54439	broad.mit.edu;bcgsc.ca	37	5	145638017	145638017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	145638017	A	G	145638017	3	3	642	1	0	0	0	0	1	0	0	0	13140	362	13	3	1642	3	RBM27	5	145638017	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	24225369	145638017	35277243	36	38151											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176562915	176562915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	176562915	T	G	176562915	3	3	642	1	0	0	0	0	1	0	0	0	10676	1490	52	5	813	5	NSD1	5	176562915	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	30924898	176562915	4352345	37	38152											
KIF6	221458	broad.mit.edu	37	6	39607523	39607523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	39607523	C	T	39607523	3	4	642	1	0	0	0	0	1	0	0	0	8315	681	24	2	2262	2	KIF6	6	39607523	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		39607523	131507544	38	38153											
MRPS10	55173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42176601	42176601	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	42176601	T	A	42176601	3	1	642	1	0	0	0	0	1	0	0	0	9828	1725	60	5	96	5	MRPS10	6	42176601	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	2569078	42176601	128938466	39	38154											
SLC29A1	2030	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44197513	44197513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	44197513	C	A	44197513	3	1	642	1	0	0	0	0	1	0	0	0	14547	855	30	4	309	4	SLC29A1	6	44197513	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	2020912	44197513	126917554	40	38155											
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227601	74227601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	74227601	C	T	74227601	3	4	642	1	0	0	0	0	1	0	0	0	4925	565	20	2	71	2	EEF1A1	6	74227601	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	30030088	74227601	96887466	41	38156											
RIPPLY2	134701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84563845	84563845	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	84563845	C	T	84563845	2	4	642	1	0	0	0	0	0	0	0	1	13398	668	24	2		2	RIPPLY2	6	84563845	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	10336244	84563845	86551222	42	38157											
IGF2R	3482	hgsc.bcm.edu;bcgsc.ca	37	6	160494272	160494272	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	160494272	G	-	160494272	7	5	642	1	0	1	0	1	0	0	0	0	7583	971	34	0	4852	0	IGF2R	6	160494272	Frame_Shift_Del	DEL	G	TCGA-GL-A59T-01A-21D-A28G-10	75930427	160494272	10620795	43	38158											
ACTB	60	broad.mit.edu	37	7	5568199	5568199	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	5568199	G	C	5568199	3	2	642	1	0	0	0	0	1	0	0	0	193	1232	43	4	624	4	ACTB	7	5568199	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10		5568199	153570464	44	38159											
C7orf65	401335	broad.mit.edu;bcgsc.ca	37	7	47698325	47698325	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	47698325	G	A	47698325	2	1	642	1	0	0	0	0	0	0	0	1	2413	1310	46	2		2	C7orf65	7	47698325	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	42130126	47698325	111440338	45	38160											
GATAD1	57798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92083893	92083893	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	92083893	A	G	92083893	2	3	642	1	0	0	0	0	0	0	0	1	6266	301	11	3		3	GATAD1	7	92083893	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	44385568	92083893	67054770	46	38161											
LRCH4	4034	broad.mit.edu;bcgsc.ca	37	7	100176068	100176068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	100176068	C	A	100176068	3	1	642	1	0	0	0	0	1	0	0	0	8942	739	26	4	1301	4	LRCH4	7	100176068	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	8092175	100176068	58962595	47	38162											
DOCK5	80005	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25224425	25224425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	25224425	A	G	25224425	3	3	642	1	0	0	0	0	1	0	0	0	4692	159	6	3	3285	3	DOCK5	8	25224425	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		25224425	121139597	48	38163											
KIF13B	23303	broad.mit.edu;bcgsc.ca	37	8	28984648	28984650	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	28984650	CTC	-	28984648	7	5	642	1	0	1	0	1	0	0	0	0	8282	912	32	0	2331	0	KIF13B	8	28984648	In_Frame_Del	DEL	CTC	TCGA-GL-A59T-01A-21D-A28G-10	3760223	28984648	117379374	49	38164	491	2									
KIF13B	23303	broad.mit.edu;bcgsc.ca	37	8	28984652	28984654	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	28984654	TGT	-	28984652	7	5	642	1	0	1	0	1	0	0	0	0	8282	1464	51	0	2335	0	KIF13B	8	28984652	In_Frame_Del	DEL	TGT	TCGA-GL-A59T-01A-21D-A28G-10	4	28984652	117379370	50	38165	491	2									
WHSC1L1	54904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	38175506	38175506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	38175506	C	T	38175506	3	4	642	1	0	0	0	0	1	0	0	0	17375	536	19	1	2554	1	WHSC1L1	8	38175506	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	9190854	38175506	108188516	51	38166											
INTS8	55656	ucsc.edu	37	8	95884142	95884142	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	95884142	A	G	95884142	2	3	642	1	0	0	0	0	0	0	0	1	7791	117	5	3		3	INTS8	8	95884142	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	57708636	95884142	50479880	52	38167											
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	5126752	5126752	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	5126752	T	C	5126752	2	2	642	1	0	0	0	0	0	0	0	1	7945	1538	54	3		3	JAK2	9	5126752	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10		5126752	136086679	53	38168											
IFT74	80173	ucsc.edu	37	9	27055739	27055739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	27055739	C	T	27055739	3	4	642	1	0	0	0	0	1	0	0	0	7570	797	28	2	1597	2	IFT74	9	27055739	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	21928987	27055739	114157692	54	38169											
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90321821	90321821	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	90321821	T	G	90321821	3	3	642	1	0	0	0	0	1	0	0	0	4237	1609	56	5	3933	5	DAPK1	9	90321821	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	63266082	90321821	50891610	55	38170											
SPTAN1	6709	broad.mit.edu	37	9	131370209	131370209	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	131370209	G	T	131370209	4	4	642	1	0	0	0	0	0	1	0	0	15129	1117	39	4	4351	4	SPTAN1	9	131370209	Nonsense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	41048388	131370209	9843222	56	38171											
ABL1	25	ucsc.edu;bcgsc.ca	37	9	133738297	133738297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	133738297	G	A	133738297	3	1	642	1	0	0	0	0	1	0	0	0	92	1058	37	1	851	1	ABL1	9	133738297	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	2368088	133738297	7475134	57	38172											
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134505712	134505712	+	Splice_Site	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	134505712	C	T	134505712	5	4	642	1	0	0	0	0	0	0	1	0	13056	695	24	2	2709	2	RAPGEF1	9	134505712	Splice_Site	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	767415	134505712	6707719	58	38173											
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7811178	7811178	+	Splice_Site	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	7811178	C	T	7811178	5	4	642	1	0	0	0	0	0	0	1	0	8322	521	18	2	406	2	KIN	10	7811178	Splice_Site	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		7811178	127723569	59	38174											
KIAA1217	56243	broad.mit.edu;bcgsc.ca	37	10	24834831	24834831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	24834831	G	A	24834831	3	1	642	1	0	0	0	0	1	0	0	0	8223	971	34	2	5492	2	KIAA1217	10	24834831	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	17023653	24834831	110699916	60	38175											
PLCE1	51196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96005839	96005839	+	Missense_Mutation	SNP	A	A	G	rs200483837	alternate_allele	TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	96005839	A	G	96005839	3	3	642	1	0	0	0	0	1	0	0	0	12041	217	8	3	2869	3	PLCE1	10	96005839	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	71171008	96005839	39528908	61	38176											
HPS1	3257	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	100177417	100177417	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	100177417	G	A	100177417	2	1	642	1	0	0	0	0	0	0	0	1	7346	1219	43	2		2	HPS1	10	100177417	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	4171578	100177417	35357330	62	38177											
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101559080	101559080	+	Silent	SNP	G	G	A	rs181542662		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	101559080	G	A	101559080	2	1	642	1	0	0	0	0	0	0	0	1	53	1277	45	2		2	ABCC2	10	101559080	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	1381663	101559080	33975667	63	38178											
OAT	4942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	126100644	126100644	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	126100644	T	-	126100644	7	5	642	1	0	1	0	1	0	0	0	0	10810	1725	60	0	1258	0	OAT	10	126100644	Frame_Shift_Del	DEL	T	TCGA-GL-A59T-01A-21D-A28G-10	24541564	126100644	9434103	64	38179											
AP2A2	161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	985477	985477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	985477	T	C	985477	3	2	642	1	0	0	0	0	1	0	0	0	740	1435	50	3	887	3	AP2A2	11	985477	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10		985477	134021039	65	38180											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu	37	11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	1093292	C	T	1093292	3	4	642	1	0	0	0	0	1	0	0	0	9982	507	18	2	5229	2	MUC2	11	1093292	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	107815	1093292	133913224	66	38181											
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58978564	58978564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	58978564	C	T	58978564	3	4	642	1	0	0	0	0	1	0	0	0	9730	681	24	2	379	2	MPEG1	11	58978564	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	57885272	58978564	76027952	67	38182											
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64517951	64517951	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	64517951	T	A	64517951	3	1	642	1	0	0	0	0	1	0	0	0	12875	1696	59	5	470	5	PYGM	11	64517951	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	5539387	64517951	70488565	68	38183											
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	71733436	71733436	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	71733436	G	-	71733436	7	5	642	1	0	1	0	1	0	0	0	0	10757	1335	47	0	6110	0	NUMA1	11	71733436	Frame_Shift_Del	DEL	G	TCGA-GL-A59T-01A-21D-A28G-10	7215485	71733436	63273080	69	38184											
PRCP	5547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82560214	82560214	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	82560214	T	C	82560214	2	2	642	1	0	0	0	0	0	0	0	1	12459	1451	51	3		3	PRCP	11	82560214	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	10826778	82560214	52446302	70	38185											
DDX10	1662	hgsc.bcm.edu	37	11	108559718	108559718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	108559718	A	G	108559718	3	3	642	1	0	0	0	0	1	0	0	0	4344	72	3	3	930	3	DDX10	11	108559718	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	25999504	108559718	26446798	71	38186											
SLC37A4	2542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118895661	118895661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	118895661	T	C	118895661	3	2	642	1	0	0	0	0	1	0	0	0	14613	1464	51	3	44	3	SLC37A4	11	118895661	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	10335943	118895661	16110855	72	38187											
NCAPD2	9918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6637492	6637492	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	6637492	T	C	6637492	2	2	642	1	0	0	0	0	0	0	0	1	10212	1538	54	3		3	NCAPD2	12	6637492	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10		6637492	127214403	73	38188											
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50847398	50847398	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	50847398	T	C	50847398	2	2	642	1	0	0	0	0	0	0	0	1	8637	1413	49	3		3	LARP4	12	50847398	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	44209906	50847398	83004497	74	38189											
NPFF	8620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53900627	53900627	+	Missense_Mutation	SNP	C	C	T	rs199569723		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	53900627	C	T	53900627	3	4	642	1	0	0	0	0	1	0	0	0	10583	652	23	1	70	1	NPFF	12	53900627	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	3053229	53900627	79951268	75	38190											
CEP290	80184	broad.mit.edu;bcgsc.ca	37	12	88474150	88474150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	88474150	C	T	88474150	3	4	642	1	0	0	0	0	1	0	0	0	3255	835	29	2	2472	2	CEP290	12	88474150	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	34573523	88474150	45377745	76	38191											
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	88514780	88514780	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	88514780	A	C	88514780	4	2	642	1	0	0	0	0	0	1	0	0	3255	224	8	5	6250	5	CEP290	12	88514780	Nonsense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	40630	88514780	45337115	77	38192											
ANKS1B	56899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99640158	99640158	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	99640158	G	A	99640158	2	1	642	1	0	0	0	0	0	0	0	1	689	1335	47	2		2	ANKS1B	12	99640158	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	11125378	99640158	34211737	78	38193											
CCDC64	92558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120428098	120428098	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	120428098	C	T	120428098	2	4	642	1	0	0	0	0	0	0	0	1	2837	871	31	1		1	CCDC64	12	120428098	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	20787940	120428098	13423797	79	38194											
GPC6	10082	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	94938687	94938687	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	94938687	A	C	94938687	3	2	642	1	0	0	0	0	1	0	0	0	6609	246	9	5	980	5	GPC6	13	94938687	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		94938687	20231191	80	38195											
FAM161B	145483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74409353	74409353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	74409353	A	T	74409353	3	4	642	1	0	0	0	0	1	0	0	0	5477	246	9	5	976	5	FAM161B	14	74409353	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		74409353	32940187	81	38196											
RAB26	25837	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2201715	2201715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	2201715	A	G	2201715	3	3	642	1	0	0	0	0	1	0	0	0	12926	188	7	3	382	3	RAB26	16	2201715	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		2201715	88153038	82	38197											
TBC1D24	57465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2550436	2550436	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	2550436	G	T	2550436	2	4	642	1	0	0	0	0	0	0	0	1	15626	1306	46	4		4	TBC1D24	16	2550436	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	348721	2550436	87804317	83	38198											
CHD9	80205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53288491	53288491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	53288491	A	G	53288491	3	3	642	1	0	0	0	0	1	0	0	0	3334	304	11	3	4069	3	CHD9	16	53288491	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	50738055	53288491	37066262	84	38199											
SDR42E1	93517	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	82033252	82033252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	82033252	G	T	82033252	3	4	642	1	0	0	0	0	1	0	0	0	13986	1232	43	4	539	4	SDR42E1	16	82033252	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	28744761	82033252	8321501	85	38200											
FBXW10	10517	bcgsc.ca	37	17	18653384	18653384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	18653384	G	T	18653384	3	4	642	1	0	0	0	0	1	0	0	0	5770	1348	47	4	947	4	FBXW10	17	18653384	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10		18653384	62541826	86	38201											
TCAP	8557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37821723	37821723	+	Splice_Site	SNP	G	G	A	rs113187448	alternate_allele	TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	37821723	G	A	37821723	5	1	642	1	0	0	0	0	0	0	1	0	15678	1275	44	2	113	2	TCAP	17	37821723	Splice_Site	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	19168339	37821723	43373487	87	38202											
KRT10	3858	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38978229	38978229	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	38978229	G	A	38978229	2	1	642	1	0	0	0	0	0	0	0	1	8455	1048	37	1		1	KRT10	17	38978229	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	1156506	38978229	42216981	88	38203											
EME1	146956	bcgsc.ca	37	17	48457701	48457701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	48457701	T	C	48457701	3	2	642	1	0	0	0	0	1	0	0	0	5090	1609	56	3	1440	3	EME1	17	48457701	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	9479472	48457701	32737509	89	38204											
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78811724	78811724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	78811724	A	C	78811724	3	2	642	1	0	0	0	0	1	0	0	0	13678	130	5	5	1177	5	RPTOR	17	78811724	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	30354023	78811724	2383486	90	38205											
ACTG1	71	ucsc.edu	37	17	79478136	79478136	+	Splice_Site	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	79478136	T	C	79478136	5	2	642	1	0	0	0	0	0	0	1	0	196	1536	53	3	334	3	ACTG1	17	79478136	Splice_Site	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	666412	79478136	1717074	91	38206											
IMPACT	55364	broad.mit.edu	37	18	22020564	22020564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	22020564	A	G	22020564	3	3	642	1	0	0	0	0	1	0	0	0	7731	449	16	3	494	3	IMPACT	18	22020564	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		22020564	56056684	92	38207											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9048182	9048182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	9048182	C	T	9048182	3	4	642	1	0	0	0	0	1	0	0	0	9980	855	30	2	10394	2	MUC16	19	9048182	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		9048182	50080801	93	38208											
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	11558370	G	A	11558370	2	1	642	1	0	0	0	0	0	0	0	1	12526	991	35	2		2	PRKCSH	19	11558370	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	2510188	11558370	47570613	94	38209											
GIPC1	10755	broad.mit.edu	37	19	14591257	14591257	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	14591257	A	T	14591257	3	4	642	1	0	0	0	0	1	0	0	0	6399	333	12	5	502	5	GIPC1	19	14591257	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	3032887	14591257	44537726	95	38210											
GRWD1	83743	hgsc.bcm.edu	37	19	48953775	48953775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	48953775	G	-	48953775	7	5	642	1	0	1	0	1	0	0	0	0	6818	1116	39	0	688	0	GRWD1	19	48953775	Frame_Shift_Del	DEL	G	TCGA-GL-A59T-01A-21D-A28G-10	34362518	48953775	10175208	96	38211											
FAM71E1	112703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50970983	50970983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	50970983	C	T	50970983	3	4	642	1	0	0	0	0	1	0	0	0	5618	739	26	2	104	2	FAM71E1	19	50970983	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	2017208	50970983	8158000	97	38212											
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52496371	52496372	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	AT	52496372	GC	AT	52496371	3	1	642	1	0	0	0	0	1	0	0	0	18052	1319	46	2	241	2	ZNF615	19	52496371	Missense_Mutation	DNP	GC	TCGA-GL-A59T-01A-21D-A28G-10	1525388	52496371	6632612	98	38213											
ZNF160	90338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53572249	53572249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	53572249	T	C	53572249	3	2	642	1	0	0	0	0	1	0	0	0	17751	1551	54	3	922	3	ZNF160	19	53572249	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	1075878	53572249	5556734	99	38214											
ZNF416	55659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58084873	58084873	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	58084873	A	T	58084873	4	4	642	1	0	0	0	0	0	1	0	0	17905	157	6	5	1389	5	ZNF416	19	58084873	Nonsense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	4512624	58084873	1044110	100	38215											
TBC1D20	128637	broad.mit.edu	37	20	422661	422661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	422661	G	T	422661	3	4	642	1	0	0	0	0	1	0	0	0	15621	971	34	4	867	4	TBC1D20	20	422661	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10		422661	62602859	101	38216											
SRXN1	140809	broad.mit.edu	37	20	633661	633661	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	633661	A	G	633661	2	3	642	1	0	0	0	0	0	0	0	1	15185	40	2	3		3	SRXN1	20	633661	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	211000	633661	62391859	102	38217											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9440354	9440354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	9440354	G	A	9440354	3	1	642	1	0	0	0	0	1	0	0	0	12037	943	33	2	3271	2	PLCB4	20	9440354	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	8806693	9440354	53585166	103	38218											
MYH7B	57644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	33567508	33567512	+	Frame_Shift_Del	DEL	TCGCT	TCGCT	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TCGCT	TCGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	33567512	TCGCT	-	33567508	7	5	642	1	0	1	0	1	0	0	0	0	10047	1538	54	0	387	0	MYH7B	20	33567508	Frame_Shift_Del	DEL	TCGCT	TCGA-GL-A59T-01A-21D-A28G-10	24127154	33567508	29458012	104	38219											
APP	351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	27328004	27328004	+	Silent	SNP	G	G	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	C	27328004	G	C	27328004	2	2	642	1	0	0	0	0	0	0	0	1	815	1219	43	4		4	APP	21	27328004	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10		27328004	20801891	105	38220											
BRWD1	54014	bcgsc.ca	37	21	40646393	40646393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	40646393	A	G	40646393	3	3	642	1	0	0	0	0	1	0	0	0	1527	420	15	3	6170	3	BRWD1	21	40646393	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	13318389	40646393	7483502	106	38221											
DIP2A	23181	hgsc.bcm.edu;bcgsc.ca	37	21	47985760	47985761	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	-	47985761	TG	-	47985760	7	5	642	1	0	1	0	1	0	0	0	0	4529	1799	63	0	4554	0	DIP2A	21	47985760	Frame_Shift_Del	DEL	TG	TCGA-GL-A59T-01A-21D-A28G-10	7339367	47985760	144135	107	38222											
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	19967613	19967613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	19967613	C	A	19967613	3	1	642	1	0	0	0	0	1	0	0	0	1003	768	27	4	1895	4	ARVCF	22	19967613	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		19967613	31336953	108	38223											
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	29885562	G	A	29885562	3	1	642	1	0	0	0	0	1	0	0	0	10321	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	9917949	29885562	21419004	109	38224											
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40055466	40055466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	40055466	A	G	40055466	3	3	642	1	0	0	0	0	1	0	0	0	2548	131	5	3	2409	3	CACNA1I	22	40055466	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	10169904	40055466	11249100	110	38225											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46654194	46654194	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	A	46654194	G	A	46654194	4	1	642	1	0	0	0	0	0	1	0	0	11977	1357	47	2	1739	2	PKDREJ	22	46654194	Nonsense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	6598728	46654194	4650372	111	38226											
TTC38	55020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46677589	46677589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	46677589	A	G	46677589	3	3	642	1	0	0	0	0	1	0	0	0	16718	217	8	3	735	3	TTC38	22	46677589	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	23395	46677589	4626977	112	38227											
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	10062249	10062249	+	Silent	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	T	10062249	A	T	10062249	2	4	642	1	0	0	0	0	0	0	0	1	17425	407	15	5		5	WWC3	23	10062249	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		10062249	145208311	113	38228											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53584383	53584383	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	G	53584383	A	G	53584383	2	3	642	1	0	0	0	0	0	0	0	1	7468	175	7	3		3	HUWE1	23	53584383	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	43522134	53584383	101686177	114	38229											
DDI2	84301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15956850	15956850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	15956850	C	A	15956850	3	1	643	1	0	0	0	0	1	0	0	0	4331	797	28	4	309	4	DDI2	1	15956850	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08		15956850	233293771	1	38230											
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50149203	50149203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	50149203	C	G	50149203	3	3	643	1	0	0	0	0	1	0	0	0	10672	565	20	4	124	4	NRXN1	2	50149203	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08		50149203	193050170	2	38231											
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55523606	55523606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	55523606	T	C	55523606	3	2	643	1	0	0	0	0	1	0	0	0	2865	1522	53	3	748	3	CCDC88A	2	55523606	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	5374403	55523606	187675767	3	38232											
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62067675	62067675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	62067675	A	T	62067675	3	4	643	1	0	0	0	0	1	0	0	0	5476	217	8	5	1534	5	FAM161A	2	62067675	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	6544069	62067675	181131698	4	38233											
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	68368907	68368907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	68368907	G	T	68368907	3	4	643	1	0	0	0	0	1	0	0	0	17351	1232	43	4	657	4	WDR92	2	68368907	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	6301232	68368907	174830466	5	38234											
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85770091	85770091	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	85770091	A	T	85770091	3	4	643	1	0	0	0	0	1	0	0	0	9337	72	3	5	1049	5	MAT2A	2	85770091	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	17401184	85770091	157429282	6	38235											
PHOSPHO2	493911	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	170557930	170557930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	170557930	A	G	170557930	3	3	643	1	0	0	0	0	1	0	0	0	11864	101	4	3	451	3	PHOSPHO2	2	170557930	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	84787839	170557930	72641443	7	38236											
PSMD1	5707	broad.mit.edu;bcgsc.ca	37	2	231943417	231943417	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	-	231943417	A	-	231943417	7	5	643	1	0	1	0	1	0	0	0	0	12702	117	5	0	1154	0	PSMD1	2	231943417	Frame_Shift_Del	DEL	A	TCGA-HE-7128-01A-11D-1961-08	61385487	231943417	11255956	8	38237											
OR6B2	389090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	240969643	240969643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	240969643	G	C	240969643	3	2	643	1	0	0	0	0	1	0	0	0	11195	1165	41	4	736	4	OR6B2	2	240969643	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	9026226	240969643	2229730	9	38238											
RPL14	9045	hgsc.bcm.edu	37	3	40503557	40503557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	40503557	T	C	40503557	3	2	643	1	0	0	0	0	1	0	0	0	13574	1725	60	3	511	3	RPL14	3	40503557	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08		40503557	157518873	10	38239											
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108324275	108324275	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	-	108324275	T	-	108324275	7	5	643	1	0	1	0	1	0	0	0	0	4867	1493	52	0	24	0	DZIP3	3	108324275	Frame_Shift_Del	DEL	T	TCGA-HE-7128-01A-11D-1961-08	67820718	108324275	89698155	11	38240											
LIPH	200879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185241864	185241865	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	-	185241865	AA	-	185241864	7	5	643	1	0	1	0	1	0	0	0	0	8831	131	5	0	666	0	LIPH	3	185241864	Frame_Shift_Del	DEL	AA	TCGA-HE-7128-01A-11D-1961-08	76917589	185241864	12780566	12	38241											
THAP9	79725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83839493	83839493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	83839493	G	A	83839493	3	1	643	1	0	0	0	0	1	0	0	0	15863	942	33	2	2146	2	THAP9	4	83839493	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08		83839493	107314783	13	38242											
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	149075914	149075914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	149075914	G	C	149075914	3	2	643	1	0	0	0	0	1	0	0	0	10638	1059	37	4	821	4	NR3C2	4	149075914	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	65236421	149075914	42078362	14	38243											
PTK7	5754	broad.mit.edu	37	6	43112987	43112987	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	43112987	G	A	43112987	2	1	643	1	0	0	0	0	0	0	0	1	12776	991	35	2		2	PTK7	6	43112987	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		43112987	128002080	15	38244											
SLC22A7	10864	ucsc.edu	37	6	43270500	43270500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	43270500	A	G	43270500	3	3	643	1	0	0	0	0	1	0	0	0	14472	202	7	3	1414	3	SLC22A7	6	43270500	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	157513	43270500	127844567	16	38245											
NT5DC1	221294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116429548	116429548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	116429548	T	A	116429548	3	1	643	1	0	0	0	0	1	0	0	0	10697	1432	50	5	217	5	NT5DC1	6	116429548	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	73159048	116429548	54685519	17	38246											
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	134495704	134495704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	134495704	T	C	134495704	3	2	643	1	0	0	0	0	1	0	0	0	14220	1435	50	3	1242	3	SGK1	6	134495704	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	18066156	134495704	36619363	18	38247											
SLC35D3	340146	hgsc.bcm.edu	37	6	137245094	137245094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	137245094	T	C	137245094	3	2	643	1	0	0	0	0	1	0	0	0	14596	1522	53	3	517	3	SLC35D3	6	137245094	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	2749390	137245094	33869973	19	38248											
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104748161	104748161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	104748161	A	T	104748161	3	4	643	1	0	0	0	0	1	0	0	0	9631	275	10	5	3335	5	MLL5	7	104748161	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08		104748161	54390502	20	38249											
TTC26	79989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	138822639	138822639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	138822639	T	C	138822639	3	2	643	1	0	0	0	0	1	0	0	0	16706	1493	52	3	198	3	TTC26	7	138822639	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	34074478	138822639	20316024	21	38250											
AGPAT6	137964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41467379	41467379	+	Silent	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	41467379	C	T	41467379	2	4	643	1	0	0	0	0	0	0	0	1	391	709	25	2		2	AGPAT6	8	41467379	Silent	SNP	C	TCGA-HE-7128-01A-11D-1961-08		41467379	104896643	22	38251											
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4706079	4706079	+	Silent	SNP	A	A	G	rs200977934	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	4706079	A	G	4706079	2	3	643	1	0	0	0	0	0	0	0	1	3071	69	3	3		3	CDC37L1	9	4706079	Silent	SNP	A	TCGA-HE-7128-01A-11D-1961-08		4706079	136507352	23	38252											
OGN	4969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	95148550	95148550	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	-	95148550	A	-	95148550	7	5	643	1	0	1	0	1	0	0	0	0	10853	131	5	0	245	0	OGN	9	95148550	Frame_Shift_Del	DEL	A	TCGA-HE-7128-01A-11D-1961-08	90442471	95148550	46064881	24	38253											
TOR2A	27433	ucsc.edu	37	9	130494938	130494938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	130494938	G	A	130494938	3	1	643	1	0	0	0	0	1	0	0	0	16387	1319	46	2	347	2	TOR2A	9	130494938	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	35346388	130494938	10718493	25	38254											
SLC16A12	387700	bcgsc.ca	37	10	91203549	91203549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	91203549	T	C	91203549	3	2	643	1	0	0	0	0	1	0	0	0	14418	1435	50	3	1302	3	SLC16A12	10	91203549	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08		91203549	44331198	26	38255											
OR51A7	119687	broad.mit.edu;bcgsc.ca	37	11	4928976	4928976	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	-	4928976	T	-	4928976	7	5	643	1	0	1	0	1	0	0	0	0	11095	1493	52	0	379	0	OR51A7	11	4928976	Frame_Shift_Del	DEL	T	TCGA-HE-7128-01A-11D-1961-08		4928976	130077540	27	38256											
NDUFS3	4722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47604000	47604000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	47604000	C	T	47604000	3	4	643	1	0	0	0	0	1	0	0	0	10300	855	30	2	629	2	NDUFS3	11	47604000	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	42675024	47604000	87402516	28	38257											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73020521	73020521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	73020521	G	T	73020521	3	4	643	1	0	0	0	0	1	0	0	0	900	1058	37	4	840	4	ARHGEF17	11	73020521	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	25416521	73020521	61985995	29	38258											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49446075	49446075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	49446075	G	A	49446075	3	1	643	1	0	0	0	0	1	0	0	0	9628	1319	46	2	15402	2	MLL2	12	49446075	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08		49446075	84405820	30	38259											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101684601	101684601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	101684601	A	G	101684601	3	3	643	1	0	0	0	0	1	0	0	0	17111	217	8	3	856	3	UTP20	12	101684601	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	52238526	101684601	32167294	31	38260											
PTPN11	5781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112892482	112892482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	112892482	C	A	112892482	3	1	643	1	0	0	0	0	1	0	0	0	12791	711	25	4	658	4	PTPN11	12	112892482	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	11207881	112892482	20959413	32	38261											
ABCB9	23457	broad.mit.edu	37	12	123444428	123444428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	123444428	G	T	123444428	3	4	643	1	0	0	0	0	1	0	0	0	48	991	35	4	1989	4	ABCB9	12	123444428	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	10551946	123444428	10407467	33	38262											
OGFOD2	79676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123463804	123463804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	123463804	C	G	123463804	3	3	643	1	0	0	0	0	1	0	0	0	10849	652	23	4	806	4	OGFOD2	12	123463804	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	19376	123463804	10388091	34	38263											
FARP1	10160	ucsc.edu	37	13	98865556	98865556	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	98865556	G	A	98865556	2	1	643	1	0	0	0	0	0	0	0	1	5683	1103	39	1		1	FARP1	13	98865556	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		98865556	16304322	35	38264											
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	93730186	93730186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	93730186	A	C	93730186	3	2	643	1	0	0	0	0	1	0	0	0	1548	14	1	5	2114	5	BTBD7	14	93730186	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08		93730186	13619354	36	38265											
SLC27A2	11001	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50528292	50528292	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	50528292	G	A	50528292	2	1	643	1	0	0	0	0	0	0	0	1	14539	1285	45	2		2	SLC27A2	15	50528292	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		50528292	52003100	37	38266											
CDH16	1014	ucsc.edu	37	16	66949283	66949283	+	Splice_Site	SNP	T	T	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	66949283	T	A	66949283	5	1	643	1	0	0	0	0	0	0	1	0	3103	1594	55	5	2118	5	CDH16	16	66949283	Splice_Site	SNP	T	TCGA-HE-7128-01A-11D-1961-08		66949283	23405470	38	38267											
PIK3R6	146850	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8731475	8731475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	8731475	G	A	8731475	3	1	643	1	0	0	0	0	1	0	0	0	11930	1232	43	2	953	2	PIK3R6	17	8731475	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08		8731475	72463735	39	38268											
NOL11	25926	broad.mit.edu	37	17	65732103	65732103	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	-	65732103	G	-	65732103	7	5	643	1	0	1	0	1	0	0	0	0	10528	1000	35	0	1052	0	NOL11	17	65732103	Frame_Shift_Del	DEL	G	TCGA-HE-7128-01A-11D-1961-08	57000628	65732103	15463107	40	38269											
ASXL3	80816	hgsc.bcm.edu	37	18	31318454	31318454	+	Silent	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	C	31318454	G	C	31318454	2	2	643	1	0	0	0	0	0	0	0	1	1068	1335	47	4		4	ASXL3	18	31318454	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		31318454	46758794	41	38270											
ZNF532	55205	ucsc.edu	37	18	56586955	56586955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	56586955	C	T	56586955	3	4	643	1	0	0	0	0	1	0	0	0	17984	536	19	1	1438	1	ZNF532	18	56586955	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	25268501	56586955	21490293	42	38271											
MIDN	90007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1257046	1257048	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	-	1257048	GCT	-	1257046	7	5	643	1	0	1	0	1	0	0	0	0	9586	1190	42	0	1208	0	MIDN	19	1257046	In_Frame_Del	DEL	GCT	TCGA-HE-7128-01A-11D-1961-08		1257046	57871937	43	38272											
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14263148	14263148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	14263148	A	G	14263148	3	3	643	1	0	0	0	0	1	0	0	0	8922	304	11	3	799	3	LPHN1	19	14263148	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	13006102	14263148	44865835	44	38273											
EMR2	30817	ucsc.edu	37	19	14884819	14884819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	T	14884819	C	T	14884819	3	4	643	1	0	0	0	0	1	0	0	0	5107	768	27	1	2413	1	EMR2	19	14884819	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	621671	14884819	44244164	45	38274											
CYP4F2	8529	broad.mit.edu;bcgsc.ca	37	19	16003152	16003153	+	Frame_Shift_Ins	INS	-	-	ATAT	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	ATAT	16003153	-	ATAT	16003152	7	5	643	1	0	1	1	0	0	0	0	0	4190	826	29	0	1106	0	CYP4F2	19	16003152	Frame_Shift_Ins	INS	-	TCGA-HE-7128-01A-11D-1961-08	1118333	16003152	43125831	46	38275											
LPAR2	9170	broad.mit.edu	37	19	19735163	19735163	+	Missense_Mutation	SNP	G	G	A	rs144007983		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	19735163	G	A	19735163	3	1	643	1	0	0	0	0	1	0	0	0	8912	1116	39	1	101	1	LPAR2	19	19735163	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	3732011	19735163	39393820	47	38276											
MIA	8190	ucsc.edu	37	19	41282923	41282924	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	AA	41282924	CC	AA	41282923	3	1	643	1	0	0	0	0	1	0	0	0	9570	623	22	4	321	4	MIA	19	41282923	Missense_Mutation	DNP	CC	TCGA-HE-7128-01A-11D-1961-08	21547760	41282923	17846060	48	38277											
SIGLEC11	114132	hgsc.bcm.edu	37	19	50462728	50462728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	50462728	T	G	50462728	3	3	643	1	0	0	0	0	1	0	0	0	14320	1725	60	5	1178	5	SIGLEC11	19	50462728	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	9179805	50462728	8666255	49	38278											
SYT3	84258	hgsc.bcm.edu	37	19	51135725	51135725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	51135725	C	G	51135725	3	3	643	1	0	0	0	0	1	0	0	0	15487	594	21	4	1308	4	SYT3	19	51135725	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	672997	51135725	7993258	50	38279											
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62070959	62070959	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	A	62070959	G	A	62070959	2	1	643	1	0	0	0	0	0	0	0	1	8090	962	34	2		2	KCNQ2	20	62070959	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		62070959	954561	51	38280											
L3MBTL2	83746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41621916	41621916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	41621916	A	G	41621916	3	3	643	1	0	0	0	0	1	0	0	0	8599	72	3	3	1521	3	L3MBTL2	22	41621916	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08		41621916	9682650	52	38281											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31152282	31152282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	31152282	C	G	31152282	3	3	643	1	0	0	0	0	1	0	0	0	4582	855	30	4	204	4	DMD	23	31152282	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08		31152282	124118278	53	38282											
GLUD2	2747	ucsc.edu	37	X	120182436	120182436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	G	120182436	A	G	120182436	3	3	643	1	0	0	0	0	1	0	0	0	6484	412	15	3	900	3	GLUD2	23	120182436	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	89030154	120182436	35088124	54	38283											
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	14068533	14068533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	14068533	G	T	14068533	3	4	644	1	0	0	0	0	1	0	0	0	12468	1290	45	4	279	4	PRDM2	1	14068533	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		14068533	235182088	1	38284											
INSRR	3645	broad.mit.edu	37	1	156818724	156818724	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	156818724	G	A	156818724	2	1	644	1	0	0	0	0	0	0	0	1	7781	1024	36	2		2	INSRR	1	156818724	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	142750191	156818724	92431897	2	38285											
NEK2	4751	broad.mit.edu	37	1	211843673	211843673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	211843673	G	C	211843673	3	2	644	1	0	0	0	0	1	0	0	0	10331	1116	39	4	638	4	NEK2	1	211843673	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	55024949	211843673	37406948	3	38286											
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	220099828	220099828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	220099828	G	T	220099828	3	4	644	1	0	0	0	0	1	0	0	0	693	1183	41	4	1519	4	ANKZF1	2	220099828	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		220099828	23099545	4	38287											
PLCL2	23228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	17051783	17051783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	17051783	G	T	17051783	3	4	644	1	0	0	0	0	1	0	0	0	12047	1310	46	4	945	4	PLCL2	3	17051783	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		17051783	180970647	5	38288											
TRAK1	22906	ucsc.edu	37	3	42251523	42251523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	42251523	A	C	42251523	3	2	644	1	0	0	0	0	1	0	0	0	16461	391	14	5	2179	5	TRAK1	3	42251523	Missense_Mutation	SNP	A	TCGA-HE-7129-01A-11D-1961-08	25199740	42251523	155770907	6	38289											
C3orf27	23434	broad.mit.edu	37	3	128292497	128292497	+	Missense_Mutation	SNP	C	C	T	rs141693917		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	128292497	C	T	128292497	3	4	644	1	0	0	0	0	1	0	0	0	2221	536	19	1	377	1	C3orf27	3	128292497	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	86040974	128292497	69729933	7	38290											
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	134323200	134323200	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	134323200	C	A	134323200	4	1	644	1	0	0	0	0	0	1	0	0	8593	864	30	4	782	4	KY	3	134323200	Nonsense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	6030703	134323200	63699230	8	38291											
HPS3	84343	hgsc.bcm.edu;broad.mit.edu	37	3	148885021	148885021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	148885021	G	T	148885021	3	4	644	1	0	0	0	0	1	0	0	0	7347	933	33	4	2848	4	HPS3	3	148885021	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	14561821	148885021	49137409	9	38292											
VPS8	23355	ucsc.edu	37	3	184603940	184603940	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	184603940	C	T	184603940	4	4	644	1	0	0	0	0	0	1	0	0	17230	760	27	1	1855	1	VPS8	3	184603940	Nonsense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	35718919	184603940	13418490	10	38293											
CRIPAK	285464	broad.mit.edu	37	4	1388729	1388729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	1388729	G	C	1388729	3	2	644	1	0	0	0	0	1	0	0	0	3879	1117	39	4	432	4	CRIPAK	4	1388729	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		1388729	189765547	11	38294											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	155256161	155256161	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	155256161	T	G	155256161	3	3	644	1	0	0	0	0	1	0	0	0	4290	1464	51	5	7843	5	DCHS2	4	155256161	Missense_Mutation	SNP	T	TCGA-HE-7129-01A-11D-1961-08	153867432	155256161	35898115	12	38295											
SLC27A6	28965	ucsc.edu	37	5	128302311	128302311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	128302311	G	A	128302311	3	1	644	1	0	0	0	0	1	0	0	0	14543	1014	35	2	483	2	SLC27A6	5	128302311	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		128302311	52612949	13	38296											
PCDHB15	56121	hgsc.bcm.edu	37	5	140625665	140625665	+	Silent	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	140625665	T	C	140625665	2	2	644	1	0	0	0	0	0	0	0	1	11547	1538	54	3		3	PCDHB15	5	140625665	Silent	SNP	T	TCGA-HE-7129-01A-11D-1961-08	12323354	140625665	40289595	14	38297											
HNRNPAB	3182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	177632984	177632984	+	Silent	SNP	G	G	A	rs201431713	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	177632984	G	A	177632984	2	1	644	1	0	0	0	0	0	0	0	1	7268	1364	48	2		2	HNRNPAB	5	177632984	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	37007319	177632984	3282276	15	38298											
CCDC90A	63933	broad.mit.edu;ucsc.edu	37	6	13800602	13800602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	13800602	C	T	13800602	3	4	644	1	0	0	0	0	1	0	0	0	2870	893	31	1	345	1	CCDC90A	6	13800602	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		13800602	157314465	16	38299											
MDFI	4188	broad.mit.edu;ucsc.edu	37	6	41614025	41614025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	41614025	G	A	41614025	3	1	644	1	0	0	0	0	1	0	0	0	9411	1145	40	1	244	1	MDFI	6	41614025	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	27813423	41614025	129501042	17	38300											
ICK	22858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	52878690	52878690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	52878690	G	C	52878690	3	2	644	1	0	0	0	0	1	0	0	0	7491	991	35	4	1000	4	ICK	6	52878690	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	11264665	52878690	118236377	18	38301											
CCM2	83605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	45112359	45112359	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	45112359	C	T	45112359	2	4	644	1	0	0	0	0	0	0	0	1	2910	668	24	2		2	CCM2	7	45112359	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08		45112359	114026304	19	38302											
HIP1	3092	broad.mit.edu	37	7	75168684	75168684	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	-	75168684	T	-	75168684	7	5	644	1	0	1	0	1	0	0	0	0	7121	1609	56	0	101	0	HIP1	7	75168684	Frame_Shift_Del	DEL	T	TCGA-HE-7129-01A-11D-1961-08	30056325	75168684	83969979	20	38303											
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	95221864	95221872	+	In_Frame_Del	DEL	CCAATGTGG	CCAATGTGG	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	CCAATGTGG	CCAATGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	-	95221872	CCAATGTGG	-	95221864	7	5	644	1	0	1	0	1	0	0	0	0	11685	855	30	0	688	0	PDK4	7	95221864	In_Frame_Del	DEL	CCAATGTGG	TCGA-HE-7129-01A-11D-1961-08	20053180	95221864	63916799	21	38304											
ZKSCAN5	23660	broad.mit.edu	37	7	99123898	99123898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	99123898	G	T	99123898	3	4	644	1	0	0	0	0	1	0	0	0	17702	1116	39	4	1253	4	ZKSCAN5	7	99123898	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	3902034	99123898	60014765	22	38305											
ZKSCAN1	7586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99621201	99621201	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	99621201	A	G	99621201	2	3	644	1	0	0	0	0	0	0	0	1	17698	349	13	3		3	ZKSCAN1	7	99621201	Silent	SNP	A	TCGA-HE-7129-01A-11D-1961-08	497303	99621201	59517462	23	38306											
SLC4A2	6522	broad.mit.edu	37	7	150769158	150769158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	150769158	C	A	150769158	3	1	644	1	0	0	0	0	1	0	0	0	14667	595	21	4	2528	4	SLC4A2	7	150769158	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	51147957	150769158	8369505	24	38307											
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150878302	150878302	+	Silent	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	150878302	C	G	150878302	2	3	644	1	0	0	0	0	0	0	0	1	1014	465	17	4		4	ASB10	7	150878302	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08	109144	150878302	8260361	25	38308											
WISP1	8840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	134225321	134225321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	134225321	C	T	134225321	3	4	644	1	0	0	0	0	1	0	0	0	17384	623	22	2	290	2	WISP1	8	134225321	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		134225321	12138701	26	38309											
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	117047026	117047026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	117047026	C	G	117047026	3	3	644	1	0	0	0	0	1	0	0	0	3687	623	22	4	4118	4	COL27A1	9	117047026	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		117047026	24166405	27	38310											
TMEM203	94107	broad.mit.edu;ucsc.edu	37	9	140099503	140099503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	140099503	A	T	140099503	3	4	644	1	0	0	0	0	1	0	0	0	16140	72	3	5	50	5	TMEM203	9	140099503	Missense_Mutation	SNP	A	TCGA-HE-7129-01A-11D-1961-08	23052477	140099503	1113928	28	38311											
PCDH15	65217	broad.mit.edu;ucsc.edu	37	10	55568839	55568839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	55568839	T	A	55568839	3	1	644	1	0	0	0	0	1	0	0	0	11518	1838	64	5	945	5	PCDH15	10	55568839	Missense_Mutation	SNP	T	TCGA-HE-7129-01A-11D-1961-08		55568839	79965908	29	38312											
AP3M1	26985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	75898090	75898090	+	Silent	SNP	T	T	C	rs147488745	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	75898090	T	C	75898090	2	2	644	1	0	0	0	0	0	0	0	1	747	1509	53	3		3	AP3M1	10	75898090	Silent	SNP	T	TCGA-HE-7129-01A-11D-1961-08	20329251	75898090	59636657	30	38313											
MUC2	4583	broad.mit.edu	37	11	1098668	1098668	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	1098668	G	A	1098668	2	1	644	1	0	0	0	0	0	0	0	1	9982	1306	46	2		2	MUC2	11	1098668	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08		1098668	133907848	31	38314											
OR8I2	120586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55861472	55861472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	55861472	C	G	55861472	3	3	644	1	0	0	0	0	1	0	0	0	11247	710	25	4	691	4	OR8I2	11	55861472	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	54762804	55861472	79145044	32	38315											
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57076186	57076186	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	57076186	C	T	57076186	2	4	644	1	0	0	0	0	0	0	0	1	16332	726	26	2		2	TNKS1BP1	11	57076186	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08	1214714	57076186	77930330	33	38316											
SLC3A2	6520	ucsc.edu	37	11	62648666	62648666	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	62648666	G	A	62648666	2	1	644	1	0	0	0	0	0	0	0	1	14640	1103	39	1		1	SLC3A2	11	62648666	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	5572480	62648666	72357850	34	38317											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	117375681	117375681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	117375681	C	T	117375681	3	4	644	1	0	0	0	0	1	0	0	0	4771	855	30	2	4117	2	DSCAML1	11	117375681	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	54727015	117375681	17630835	35	38318											
LIMA1	51474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	50571511	50571511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	50571511	C	G	50571511	3	3	644	1	0	0	0	0	1	0	0	0	8803	855	30	4	667	4	LIMA1	12	50571511	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		50571511	83280384	36	38319											
LAMP1	3916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	113964011	113964011	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	113964011	C	T	113964011	2	4	644	1	0	0	0	0	0	0	0	1	8624	668	24	2		2	LAMP1	13	113964011	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08		113964011	1205867	37	38320											
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	35242930	35242930	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	35242930	A	G	35242930	2	3	644	1	0	0	0	0	0	0	0	1	1329	349	13	3		3	BAZ1A	14	35242930	Silent	SNP	A	TCGA-HE-7129-01A-11D-1961-08		35242930	72106610	38	38321											
ESR2	2100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	64746749	64746749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	64746749	C	G	64746749	3	3	644	1	0	0	0	0	1	0	0	0	5259	855	30	4	1221	4	ESR2	14	64746749	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	29503819	64746749	42602791	39	38322											
HERC1	8925	ucsc.edu	37	15	63901303	63901303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	63901303	C	T	63901303	3	4	644	1	0	0	0	0	1	0	0	0	7064	893	31	1	26	1	HERC1	15	63901303	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		63901303	38630089	40	38323											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	24826534	24826534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	24826534	G	A	24826534	3	1	644	1	0	0	0	0	1	0	0	0	16352	1029	36	2	4813	2	TNRC6A	16	24826534	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		24826534	65528219	41	38324											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	58585134	58585134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	58585134	T	C	58585134	3	2	644	1	0	0	0	0	1	0	0	0	3619	1696	59	3	4212	3	CNOT1	16	58585134	Missense_Mutation	SNP	T	TCGA-HE-7129-01A-11D-1961-08	33758600	58585134	31769619	42	38325											
UBB	7314	broad.mit.edu	37	17	16285476	16285476	+	Silent	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	16285476	C	G	16285476	2	3	644	1	0	0	0	0	0	0	0	1	16853	639	23	4		4	UBB	17	16285476	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08		16285476	64909734	43	38326											
SLC6A4	6532	hgsc.bcm.edu	37	17	28525539	28525565	+	Frame_Shift_Del	DEL	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	-	28525565	TAATAATACGCTATTGGGAAGAAAATA	-	28525539	7	5	644	1	0	1	0	1	0	0	0	0	14699	1763	61	0	68	0	SLC6A4	17	28525539	Frame_Shift_Del	DEL	TAATAATACGCTATTGGGAAGAAAATA	TCGA-HE-7129-01A-11D-1961-08	12240063	28525539	52669671	44	38327											
BLMH	642	hgsc.bcm.edu;broad.mit.edu	37	17	28601215	28601215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	28601215	T	C	28601215	3	2	644	1	0	0	0	0	1	0	0	0	1446	1449	50	3	745	3	BLMH	17	28601215	Missense_Mutation	SNP	T	TCGA-HE-7129-01A-11D-1961-08	75676	28601215	52593995	45	38328											
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	38182477	38182477	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	38182477	C	T	38182477	2	4	644	1	0	0	0	0	0	0	0	1	9449	755	27	1		1	MED24	17	38182477	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08	9581262	38182477	43012733	46	38329											
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	45369560	45369560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	45369560	C	T	45369560	3	4	644	1	0	0	0	0	1	0	0	0	7902	855	30	2	1354	2	ITGB3	17	45369560	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	7187083	45369560	35825650	47	38330											
HSF5	124535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56540550	56540550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	56540550	C	G	56540550	3	3	644	1	0	0	0	0	1	0	0	0	7406	565	20	4	667	4	HSF5	17	56540550	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	11170990	56540550	24654660	48	38331											
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56663339	56663339	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	56663339	G	C	56663339	3	2	644	1	0	0	0	0	1	0	0	0	15790	1203	42	4	1646	4	TEX14	17	56663339	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	122789	56663339	24531871	49	38332											
METTL2A	339175	broad.mit.edu	37	17	60501296	60501296	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	G	60501296	A	G	60501296	2	3	644	1	0	0	0	0	0	0	0	1	9506	175	7	3		3	METTL2A	17	60501296	Silent	SNP	A	TCGA-HE-7129-01A-11D-1961-08	3837957	60501296	20693914	50	38333											
CYB561	1534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	61511913	61511913	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	61511913	G	A	61511913	2	1	644	1	0	0	0	0	0	0	0	1	4121	1136	40	1		1	CYB561	17	61511913	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	1010617	61511913	19683297	51	38334											
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu	37	17	67303077	67303077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	67303077	G	A	67303077	3	1	644	1	0	0	0	0	1	0	0	0	35	942	33	2	4487	2	ABCA5	17	67303077	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	5791164	67303077	13892133	52	38335											
NOTUM	147111	broad.mit.edu	37	17	79913365	79913365	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	A	79913365	G	A	79913365	2	1	644	1	0	0	0	0	0	0	0	1	10559	1136	40	1		1	NOTUM	17	79913365	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	12610288	79913365	1281845	53	38336											
HCN2	610	broad.mit.edu	37	19	615935	615935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	615935	G	C	615935	3	2	644	1	0	0	0	0	1	0	0	0	7004	1145	40	4	2161	4	HCN2	19	615935	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		615935	58513048	54	38337											
ZNF284	342909	broad.mit.edu	37	19	44590761	44590761	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	C	44590761	G	C	44590761	3	2	644	1	0	0	0	0	1	0	0	0	17833	1232	43	4	1144	4	ZNF284	19	44590761	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	43974826	44590761	14538222	55	38338											
RIN2	54453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	19955386	19955386	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	T	19955386	C	T	19955386	2	4	644	1	0	0	0	0	0	0	0	1	13385	610	22	2		2	RIN2	20	19955386	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08		19955386	43070134	56	38339											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu	37	X	44920581	44920581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	-	44920581	A	-	44920581	7	5	644	1	0	1	0	1	0	0	0	0	8144	130	5	0	1396	0	KDM6A	23	44920581	Frame_Shift_Del	DEL	A	TCGA-HE-7129-01A-11D-1961-08		44920581	110349979	57	38340											
EMD	2010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153609241	153609241	+	Splice_Site	DEL	G	G	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	-	153609241	G	-	153609241	8	5	644	1	0	1	0	1	0	0	1	0	5089	1014	35	0	471	0	EMD	23	153609241	Splice_Site	DEL	G	TCGA-HE-7129-01A-11D-1961-08	108688660	153609241	1661319	58	38341											
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2341814	2341814	+	Silent	SNP	A	A	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	2341814	A	C	2341814	2	2	645	1	0	0	0	0	0	0	0	1	11743	117	5	5		5	PEX10	1	2341814	Silent	SNP	A	TCGA-HE-7130-01A-11D-1961-08		2341814	246908807	1	38342											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10431203	10431203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	10431203	C	T	10431203	3	4	645	1	0	0	0	0	1	0	0	0	8291	913	32	2	6346	2	KIF1B	1	10431203	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	8089389	10431203	238819418	2	38343											
CASP9	842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15844625	15844625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	15844625	G	A	15844625	3	1	645	1	0	0	0	0	1	0	0	0	2681	942	33	2	884	2	CASP9	1	15844625	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	5413422	15844625	233405996	3	38344											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu	37	1	21188793	21188793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	21188793	C	G	21188793	3	3	645	1	0	0	0	0	1	0	0	0	5040	912	32	4	1946	4	EIF4G3	1	21188793	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5344168	21188793	228061828	4	38345											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21226358	21226358	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	21226358	C	A	21226358	4	1	645	1	0	0	0	0	0	1	0	0	5040	835	29	4	3182	4	EIF4G3	1	21226358	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	37565	21226358	228024263	5	38346											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21226427	21226427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	21226427	C	T	21226427	3	4	645	1	0	0	0	0	1	0	0	0	5040	835	29	2	3251	2	EIF4G3	1	21226427	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	69	21226427	228024194	6	38347											
CDC42	998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22413230	22413230	+	Silent	SNP	C	C	G	rs143448220	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	22413230	C	G	22413230	2	3	645	1	0	0	0	0	0	0	0	1	3073	813	29	4		4	CDC42	1	22413230	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1186803	22413230	226837391	7	38348											
CDC42	998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22413329	22413329	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	22413329	C	G	22413329	2	3	645	1	0	0	0	0	0	0	0	1	3073	813	29	4		4	CDC42	1	22413329	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	99	22413329	226837292	8	38349											
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38328025	38328025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	38328025	G	C	38328025	3	2	645	1	0	0	0	0	1	0	0	0	7762	1299	45	4	41	4	INPP5B	1	38328025	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	15914696	38328025	210922596	9	38350											
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38338748	38338748	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	38338748	G	A	38338748	2	1	645	1	0	0	0	0	0	0	0	1	7762	933	33	2		2	INPP5B	1	38338748	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10723	38338748	210911873	10	38351											
BMP8A	353500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39991443	39991443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	-	39991443	G	-	39991443	7	5	645	1	0	1	0	1	0	0	0	0	1466	1348	47	0	1208	0	BMP8A	1	39991443	Frame_Shift_Del	DEL	G	TCGA-HE-7130-01A-11D-1961-08	1652695	39991443	209259178	11	38352											
PTPRF	5792	broad.mit.edu;bcgsc.ca	37	1	44063474	44063474	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	44063474	C	T	44063474	2	4	645	1	0	0	0	0	0	0	0	1	12814	842	30	2		2	PTPRF	1	44063474	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4072031	44063474	205187147	12	38353											
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44063522	44063522	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	44063522	C	T	44063522	2	4	645	1	0	0	0	0	0	0	0	1	12814	816	29	2		2	PTPRF	1	44063522	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	48	44063522	205187099	13	38354											
CCDC18	343099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	93705376	93705376	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	93705376	G	C	93705376	3	2	645	1	0	0	0	0	1	0	0	0	2796	1281	45	4	3340	4	CCDC18	1	93705376	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	49641854	93705376	155545245	14	38355											
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112309171	112309171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	112309171	G	A	112309171	3	1	645	1	0	0	0	0	1	0	0	0	4350	943	33	2	2167	2	DDX20	1	112309171	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	18603795	112309171	136941450	15	38356											
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112309315	112309315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	112309315	G	A	112309315	3	1	645	1	0	0	0	0	1	0	0	0	4350	1290	45	2	2311	2	DDX20	1	112309315	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	144	112309315	136941306	16	38357											
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113124686	113124686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	113124686	C	T	113124686	3	4	645	1	0	0	0	0	1	0	0	0	15242	835	29	2	797	2	ST7L	1	113124686	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	815371	113124686	136125935	17	38358											
TXNIP	10628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145440057	145440059	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	-	145440059	AAG	-	145440057	7	5	645	1	0	1	0	1	0	0	0	0	16815	14	1	0	505	0	TXNIP	1	145440057	In_Frame_Del	DEL	AAG	TCGA-HE-7130-01A-11D-1961-08	32315371	145440057	103810564	18	38359											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151377387	151377387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	151377387	G	A	151377387	3	1	645	1	0	0	0	0	1	0	0	0	12193	1000	35	2	112	2	POGZ	1	151377387	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	5937330	151377387	97873234	19	38360											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152281276	152281276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	152281276	G	C	152281276	3	2	645	1	0	0	0	0	1	0	0	0	5929	942	33	4	6103	4	FLG	1	152281276	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	903889	152281276	96969345	20	38361											
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154544111	154544111	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	154544111	C	A	154544111	4	1	645	1	0	0	0	0	0	1	0	0	3393	838	29	4	830	4	CHRNB2	1	154544111	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	2262835	154544111	94706510	21	38362											
GON4L	54856	broad.mit.edu;bcgsc.ca	37	1	155723185	155723185	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	155723185	G	A	155723185	2	1	645	1	0	0	0	0	0	0	0	1	6579	1372	48	2		2	GON4L	1	155723185	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1179074	155723185	93527436	22	38363	492	2									
GON4L	54856	broad.mit.edu;bcgsc.ca	37	1	155723194	155723194	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	155723194	G	C	155723194	3	2	645	1	0	0	0	0	1	0	0	0	6579	1310	46	4	1095	4	GON4L	1	155723194	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9	155723194	93527427	23	38364	492	2									
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158576303	158576303	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	158576303	C	T	158576303	2	4	645	1	0	0	0	0	0	0	0	1	10930	842	30	2		2	OR10Z1	1	158576303	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	2853109	158576303	90674318	24	38365											
OR6N1	128372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158735810	158735810	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	158735810	G	A	158735810	2	1	645	1	0	0	0	0	0	0	0	1	11213	1280	45	2		2	OR6N1	1	158735810	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	159507	158735810	90514811	25	38366											
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158943473	158943473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	158943473	G	A	158943473	3	1	645	1	0	0	0	0	1	0	0	0	12878	1319	46	2	1422	2	PYHIN1	1	158943473	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	207663	158943473	90307148	26	38367											
F5	2153	broad.mit.edu	37	1	169493136	169493136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	169493136	C	A	169493136	3	1	645	1	0	0	0	0	1	0	0	0	5350	595	21	4	903	4	F5	1	169493136	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	10549663	169493136	79757485	27	38368											
FASLG	356	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	172634825	172634825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	172634825	C	T	172634825	3	4	645	1	0	0	0	0	1	0	0	0	5689	913	32	2	529	2	FASLG	1	172634825	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3141689	172634825	76615796	28	38369											
CEP350	9857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180044161	180044161	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	180044161	C	T	180044161	2	4	645	1	0	0	0	0	0	0	0	1	3256	912	32	2		2	CEP350	1	180044161	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	7409336	180044161	69206460	29	38370											
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248112585	248112585	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	248112585	G	A	248112585	2	1	645	1	0	0	0	0	0	0	0	1	11016	1277	45	2		2	OR2L8	1	248112585	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	68068424	248112585	1138036	30	38371											
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	30976059	30976059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	30976059	G	A	30976059	3	1	645	1	0	0	0	0	1	0	0	0	2628	1059	37	1	1114	1	CAPN13	2	30976059	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		30976059	212223314	31	38372											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32626579	32626579	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	32626579	C	T	32626579	4	4	645	1	0	0	0	0	0	1	0	0	1438	479	17	2	1336	2	BIRC6	2	32626579	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1650520	32626579	210572794	32	38373											
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	39281894	39281894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	39281894	G	A	39281894	3	1	645	1	0	0	0	0	1	0	0	0	14949	1174	41	2	3496	2	SOS1	2	39281894	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	6655315	39281894	203917479	33	38374											
MDH1	4190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	63826356	63826356	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	63826356	C	G	63826356	4	3	645	1	0	0	0	0	0	1	0	0	9415	838	29	4	446	4	MDH1	2	63826356	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	24544462	63826356	179373017	34	38375											
ACTR2	10097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	65492181	65492181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	65492181	G	A	65492181	3	1	645	1	0	0	0	0	1	0	0	0	211	1291	45	2	935	2	ACTR2	2	65492181	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1665825	65492181	177707192	35	38376											
CLEC4F	165530	broad.mit.edu;bcgsc.ca	37	2	71043525	71043525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	71043525	C	T	71043525	3	4	645	1	0	0	0	0	1	0	0	0	3518	835	29	2	797	2	CLEC4F	2	71043525	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5551344	71043525	172155848	36	38377											
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	99012521	99012522	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	GT	99012522	-	GT	99012521	7	5	645	1	0	1	1	0	0	0	0	0	3600	564	20	0	914	0	CNGA3	2	99012521	Frame_Shift_Ins	INS	-	TCGA-HE-7130-01A-11D-1961-08	27968996	99012521	144186852	37	38378											
SULT1C2	6819	broad.mit.edu;ucsc.edu	37	2	108921890	108921890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	108921890	G	T	108921890	3	4	645	1	0	0	0	0	1	0	0	0	15389	1116	39	4	738	4	SULT1C2	2	108921890	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9909369	108921890	134277483	38	38379											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	186678413	186678413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	186678413	A	T	186678413	3	4	645	1	0	0	0	0	1	0	0	0	6082	217	8	5	20306	5	FSIP2	2	186678413	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	77756523	186678413	56520960	39	38380											
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190922196	190922196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	190922196	C	T	190922196	3	4	645	1	0	0	0	0	1	0	0	0	9900	739	26	2	215	2	MSTN	2	190922196	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4243783	190922196	52277177	40	38381											
ALS2CR12	130540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202172265	202172265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	202172265	C	G	202172265	3	3	645	1	0	0	0	0	1	0	0	0	553	835	29	4	501	4	ALS2CR12	2	202172265	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	11250069	202172265	41027108	41	38382											
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241661280	241661280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	241661280	T	C	241661280	3	2	645	1	0	0	0	0	1	0	0	0	8290	1696	59	3	712	3	KIF1A	2	241661280	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	39489015	241661280	1538093	42	38383											
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	25833175	25833175	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	-	25833175	T	-	25833175	7	5	645	1	0	1	0	1	0	0	0	0	11342	1493	52	0	666	0	OXSM	3	25833175	Frame_Shift_Del	DEL	T	TCGA-HE-7130-01A-11D-1961-08		25833175	172189255	43	38384											
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50220896	50220896	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	50220896	G	C	50220896	3	2	645	1	0	0	0	0	1	0	0	0	14042	1290	45	4	1174	4	SEMA3F	3	50220896	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	24387721	50220896	147801534	44	38385											
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112324296	112324296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	112324296	G	A	112324296	3	1	645	1	0	0	0	0	1	0	0	0	2856	1290	45	2	35	2	CCDC80	3	112324296	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	62103400	112324296	85698134	45	38386											
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124103778	124103778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	124103778	G	C	124103778	3	2	645	1	0	0	0	0	1	0	0	0	7982	991	35	4	1893	4	KALRN	3	124103778	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	11779482	124103778	73918652	46	38387											
KY	339855	ucsc.edu	37	3	134322978	134322978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	134322978	C	T	134322978	3	4	645	1	0	0	0	0	1	0	0	0	8593	884	31	1	560	1	KY	3	134322978	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	10219200	134322978	63699452	47	38388											
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180324303	180324303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	180324303	G	C	180324303	3	2	645	1	0	0	0	0	1	0	0	0	16693	943	33	4	1118	4	TTC14	3	180324303	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	46001325	180324303	17698127	48	38389											
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180337752	180337752	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	180337752	G	C	180337752	3	2	645	1	0	0	0	0	1	0	0	0	2813	1299	45	4	844	4	CCDC39	3	180337752	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	13449	180337752	17684678	49	38390											
PDE6B	5158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	619524	619524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	619524	G	A	619524	3	1	645	1	0	0	0	0	1	0	0	0	11653	1059	37	1	111	1	PDE6B	4	619524	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		619524	190534752	50	38391											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1806099	1806099	+	Missense_Mutation	SNP	A	A	G	rs121913485	bycluster	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	1806099	A	G	1806099	3	3	645	1	0	0	0	0	1	0	0	0	5874	449	16	3	1303	3	FGFR3	4	1806099	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	1186575	1806099	189348177	51	38392											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1807891	1807891	+	Missense_Mutation	SNP	G	G	C	rs28928868		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	1807891	G	C	1807891	3	2	645	1	0	0	0	0	1	0	0	0	5874	933	33	4	2155	4	FGFR3	4	1807891	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1792	1807891	189346385	52	38393											
FGFR3	2261	broad.mit.edu;bcgsc.ca	37	4	1808562	1808562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	1808562	G	A	1808562	3	1	645	1	0	0	0	0	1	0	0	0	5874	1290	45	2	2392	2	FGFR3	4	1808562	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	671	1808562	189345714	53	38394											
JAKMIP1	152789	broad.mit.edu;ucsc.edu	37	4	6052355	6052355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	6052355	C	T	6052355	3	4	645	1	0	0	0	0	1	0	0	0	7947	893	31	1	669	1	JAKMIP1	4	6052355	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4243793	6052355	185101921	54	38395											
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	23830149	23830149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	23830149	G	T	23830149	3	4	645	1	0	0	0	0	1	0	0	0	12307	942	33	4	1801	4	PPARGC1A	4	23830149	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	17777794	23830149	167324127	55	38396											
HOPX	84525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	57514941	57514941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	57514941	G	A	57514941	3	1	645	1	0	0	0	0	1	0	0	0	7292	1319	46	2	58	2	HOPX	4	57514941	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	33684792	57514941	133639335	56	38397											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	128813651	128813651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	128813651	G	C	128813651	3	2	645	1	0	0	0	0	1	0	0	0	12105	1291	45	4	2208	4	PLK4	4	128813651	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	71298710	128813651	62340625	57	38398											
MAP3K1	4214	ucsc.edu	37	5	56155606	56155606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	56155606	C	T	56155606	3	4	645	1	0	0	0	0	1	0	0	0	9250	594	21	2	708	2	MAP3K1	5	56155606	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		56155606	124759654	58	38399											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71495628	71495628	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	71495628	C	G	71495628	4	3	645	1	0	0	0	0	0	1	0	0	9235	838	29	4	6464	4	MAP1B	5	71495628	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	15340022	71495628	109419632	59	38400											
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79027353	79027353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	79027353	C	T	79027353	3	4	645	1	0	0	0	0	1	0	0	0	3592	913	32	2	2771	2	CMYA5	5	79027353	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	7531725	79027353	101887907	60	38401			1	81		5	5	5227	N	G_C	7.968084e-08
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79030983	79030983	+	Missense_Mutation	SNP	G	G	C	rs79193094	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	79030983	G	C	79030983	3	2	645	1	0	0	0	0	1	0	0	0	3592	942	33	4	6401	4	CMYA5	5	79030983	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3630	79030983	101884277	61	38402			1	81		5	5	5227	N	G_C	7.968084e-08
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79031337	79031337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	79031337	G	A	79031337	3	1	645	1	0	0	0	0	1	0	0	0	3592	942	33	2	6755	2	CMYA5	5	79031337	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	354	79031337	101883923	62	38403			1	81		5	5	5227	N	G_C	7.968084e-08
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79031882	79031882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	79031882	G	C	79031882	3	2	645	1	0	0	0	0	1	0	0	0	3592	943	33	4	7300	4	CMYA5	5	79031882	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	545	79031882	101883378	63	38404			1	81		5	5	5227	N	G_C	7.968084e-08
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79032579	79032579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	79032579	G	A	79032579	3	1	645	1	0	0	0	0	1	0	0	0	3592	942	33	2	7997	2	CMYA5	5	79032579	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	697	79032579	101882681	64	38405			1	81		5	5	5227	N	G_C	7.968084e-08
MTX3	345778	hgsc.bcm.edu	37	5	79284404	79284404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	79284404	G	C	79284404	3	2	645	1	0	0	0	0	1	0	0	0	9976	1386	48	4	573	4	MTX3	5	79284404	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	251825	79284404	101630856	65	38406											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82786054	82786054	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	82786054	G	T	82786054	4	4	645	1	0	0	0	0	0	1	0	0	17150	1291	45	4	214	4	VCAN	5	82786054	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3501650	82786054	98129206	66	38407											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	82817031	82817031	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	82817031	C	G	82817031	3	3	645	1	0	0	0	0	1	0	0	0	17150	913	32	4	2928	4	VCAN	5	82817031	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	30977	82817031	98098229	67	38408											
APBB3	10307	hgsc.bcm.edu	37	5	139940335	139940335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	139940335	C	G	139940335	3	3	645	1	0	0	0	0	1	0	0	0	762	594	21	4	551	4	APBB3	5	139940335	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	57123304	139940335	40974925	68	38409											
PCDHGC3	5098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140856910	140856910	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	140856910	G	A	140856910	2	1	645	1	0	0	0	0	0	0	0	1	11576	1281	45	2		2	PCDHGC3	5	140856910	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	916575	140856910	40058350	69	38410											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153078520	153078520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	153078520	G	C	153078520	3	2	645	1	0	0	0	0	1	0	0	0	6774	1319	46	4	1377	4	GRIA1	5	153078520	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	12221610	153078520	27836740	70	38411											
SGCD	6444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156186311	156186311	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	156186311	C	T	156186311	2	4	645	1	0	0	0	0	0	0	0	1	14214	883	31	1		1	SGCD	5	156186311	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3107791	156186311	24728949	71	38412											
HLA-B	3106	broad.mit.edu	37	6	31324628	31324628	+	Silent	SNP	G	G	A	rs151341114	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	31324628	G	A	31324628	2	1	645	1	0	0	0	0	0	0	0	1	7203	1049	37	1		1	HLA-B	6	31324628	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		31324628	139790439	72	38413											
FOXP4	116113	bcgsc.ca	37	6	41533574	41533574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	41533574	C	A	41533574	3	1	645	1	0	0	0	0	1	0	0	0	6036	711	25	4	78	4	FOXP4	6	41533574	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	10208946	41533574	129581493	73	38414											
CUL7	9820	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43008726	43008726	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	43008726	G	A	43008726	2	1	645	1	0	0	0	0	0	0	0	1	4062	962	34	2		2	CUL7	6	43008726	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1475152	43008726	128106341	74	38415											
CUL9	23113	hgsc.bcm.edu	37	6	43181268	43181268	+	Silent	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	43181268	T	C	43181268	2	2	645	1	0	0	0	0	0	0	0	1	4063	1596	56	3		3	CUL9	6	43181268	Silent	SNP	T	TCGA-HE-7130-01A-11D-1961-08	172542	43181268	127933799	75	38416											
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43468508	43468508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	43468508	G	T	43468508	3	4	645	1	0	0	0	0	1	0	0	0	15940	1290	45	4	132	4	TJAP1	6	43468508	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	287240	43468508	127646559	76	38417											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152557320	152557320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	152557320	C	T	152557320	3	4	645	1	0	0	0	0	1	0	0	0	15457	855	30	2	6296	2	SYNE1	6	152557320	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	109088812	152557320	18557747	77	38418											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152560730	152560730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	152560730	G	C	152560730	3	2	645	1	0	0	0	0	1	0	0	0	15457	1299	45	4	6617	4	SYNE1	6	152560730	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3410	152560730	18554337	78	38419											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152730280	152730280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	152730280	C	T	152730280	3	4	645	1	0	0	0	0	1	0	0	0	15457	835	29	2	20415	2	SYNE1	6	152730280	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	169550	152730280	18384787	79	38420											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168347543	168347543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	168347543	A	C	168347543	3	2	645	1	0	0	0	0	1	0	0	0	9636	14	1	5	3596	5	MLLT4	6	168347543	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	15617263	168347543	2767524	80	38421											
FRMD1	79981	hgsc.bcm.edu;broad.mit.edu	37	6	168457843	168457843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	168457843	C	G	168457843	3	3	645	1	0	0	0	0	1	0	0	0	6056	912	32	4	69	4	FRMD1	6	168457843	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	110300	168457843	2657224	81	38422											
SBDS	51119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66456129	66456129	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	66456129	C	G	66456129	3	3	645	1	0	0	0	0	1	0	0	0	13870	922	32	4	141	4	SBDS	7	66456129	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		66456129	92682534	82	38423											
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu	37	7	77539715	77539715	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	77539715	C	G	77539715	3	3	645	1	0	0	0	0	1	0	0	0	11870	912	32	4	689	4	PHTF2	7	77539715	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	11083586	77539715	81598948	83	38424											
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu	37	7	77885410	77885410	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	77885410	C	G	77885410	3	3	645	1	0	0	0	0	1	0	0	0	9198	826	29	4	2522	4	MAGI2	7	77885410	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	345695	77885410	81253253	84	38425											
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	94035021	94035021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	94035021	G	A	94035021	3	1	645	1	0	0	0	0	1	0	0	0	3680	1348	47	2	565	2	COL1A2	7	94035021	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	16149611	94035021	65103642	85	38426											
TFR2	7036	broad.mit.edu	37	7	100239125	100239125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	100239125	C	T	100239125	3	4	645	1	0	0	0	0	1	0	0	0	15823	652	23	1	2469	1	TFR2	7	100239125	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	6204104	100239125	58899538	86	38427											
TAS2R41	259287	broad.mit.edu;bcgsc.ca	37	7	143175820	143175820	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	143175820	C	T	143175820	2	4	645	1	0	0	0	0	0	0	0	1	15591	825	29	2		2	TAS2R41	7	143175820	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	42936695	143175820	15962843	87	38428											
ATG9B	285973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150720230	150720230	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	150720230	G	A	150720230	2	1	645	1	0	0	0	0	0	0	0	1	1103	929	33	2		2	ATG9B	7	150720230	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	7544410	150720230	8418433	88	38429											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu	37	8	10468873	10468873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	10468873	C	T	10468873	3	4	645	1	0	0	0	0	1	0	0	0	13546	565	20	2	4471	2	RP1L1	8	10468873	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		10468873	135895149	89	38430											
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17885162	17885162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	17885162	G	C	17885162	3	2	645	1	0	0	0	0	1	0	0	0	11591	933	33	4	6212	4	PCM1	8	17885162	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	7416289	17885162	128478860	90	38431											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	25890622	25890622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	25890622	G	C	25890622	3	2	645	1	0	0	0	0	1	0	0	0	4883	1059	37	4	1241	4	EBF2	8	25890622	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	8005460	25890622	120473400	91	38432											
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99019720	99019720	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	99019720	C	T	99019720	2	4	645	1	0	0	0	0	0	0	0	1	9341	747	26	2		2	MATN2	8	99019720	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	73129098	99019720	47344302	92	38433											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133945814	133945814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	133945814	G	A	133945814	3	1	645	1	0	0	0	0	1	0	0	0	15825	943	33	2	4919	2	TG	8	133945814	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	34926094	133945814	12418208	93	38434											
BAI1	575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143603450	143603450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	143603450	G	A	143603450	3	1	645	1	0	0	0	0	1	0	0	0	1298	1087	38	1	3227	1	BAI1	8	143603450	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9657636	143603450	2760572	94	38435											
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37729833	37729833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	37729833	G	A	37729833	3	1	645	1	0	0	0	0	1	0	0	0	6064	943	33	2	747	2	FRMPD1	9	37729833	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		37729833	103483598	95	38436											
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	73151243	73151243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	73151243	G	C	73151243	3	2	645	1	0	0	0	0	1	0	0	0	16599	1174	41	4	377	4	TRPM3	9	73151243	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	35421410	73151243	68062188	96	38437											
C5	727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123783919	123783919	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	123783919	C	G	123783919	2	3	645	1	0	0	0	0	0	0	0	1	2282	813	29	4		4	C5	9	123783919	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	50632676	123783919	17429512	97	38438											
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135545615	135545615	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	135545615	G	C	135545615	3	2	645	1	0	0	0	0	1	0	0	0	4358	1299	45	4	2620	4	DDX31	9	135545615	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	11761696	135545615	5667816	98	38439											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	138594186	138594186	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	138594186	G	C	138594186	3	2	645	1	0	0	0	0	1	0	0	0	8098	1059	37	4	84	4	KCNT1	9	138594186	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3048571	138594186	2619245	99	38440											
CLIC3	9022	broad.mit.edu;bcgsc.ca	37	9	139890192	139890192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	139890192	C	G	139890192	3	3	645	1	0	0	0	0	1	0	0	0	3529	912	32	4	679	4	CLIC3	9	139890192	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1296006	139890192	1323239	100	38441											
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15256140	15256140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	15256140	C	T	15256140	3	4	645	1	0	0	0	0	1	0	0	0	5494	826	29	2	1229	2	FAM171A1	10	15256140	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		15256140	120278607	101	38442											
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	37451603	37451603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	37451603	G	A	37451603	3	1	645	1	0	0	0	0	1	0	0	0	658	1059	37	1	1821	1	ANKRD30A	10	37451603	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	22195463	37451603	98083144	102	38443											
CSGALNACT2	55454	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43654255	43654255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	43654255	C	T	43654255	3	4	645	1	0	0	0	0	1	0	0	0	3941	652	23	1	760	1	CSGALNACT2	10	43654255	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	6202652	43654255	91880492	103	38444											
C10orf10	11067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	45472882	45472882	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	45472882	G	A	45472882	2	1	645	1	0	0	0	0	0	0	0	1	1582	1277	45	2		2	C10orf10	10	45472882	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1818627	45472882	90061865	104	38445											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61830133	61830133	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	61830133	G	A	61830133	2	1	645	1	0	0	0	0	0	0	0	1	622	933	33	2		2	ANK3	10	61830133	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	16357251	61830133	73704614	105	38446											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61830689	61830689	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	61830689	G	C	61830689	4	2	645	1	0	0	0	0	0	1	0	0	622	1294	45	4	3524	4	ANK3	10	61830689	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	556	61830689	73704058	106	38447											
PRF1	5551	ucsc.edu;bcgsc.ca	37	10	72360284	72360284	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	72360284	G	A	72360284	2	1	645	1	0	0	0	0	0	0	0	1	12488	1164	41	2		2	PRF1	10	72360284	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10529595	72360284	63174463	107	38448											
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	73765714	73765714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	73765714	C	G	73765714	3	3	645	1	0	0	0	0	1	0	0	0	3407	874	31	4	116	4	CHST3	10	73765714	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1405430	73765714	61769033	108	38449											
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85956359	85956359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	85956359	G	A	85956359	3	1	645	1	0	0	0	0	1	0	0	0	3120	1290	45	2	260	2	CDHR1	10	85956359	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	12190645	85956359	49578388	109	38450											
CALHM1	255022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105215149	105215149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	105215149	G	A	105215149	3	1	645	1	0	0	0	0	1	0	0	0	2584	1145	40	1	133	1	CALHM1	10	105215149	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	19258790	105215149	30319598	110	38451											
TRUB1	142940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	116734920	116734920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	116734920	A	G	116734920	3	3	645	1	0	0	0	0	1	0	0	0	16614	43	2	3	862	3	TRUB1	10	116734920	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	11519771	116734920	18799827	111	38452											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129910532	129910532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	129910532	C	T	129910532	3	4	645	1	0	0	0	0	1	0	0	0	9605	922	32	2	7964	2	MKI67	10	129910532	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	13175612	129910532	5624215	112	38453											
MTG1	92170	broad.mit.edu;bcgsc.ca	37	10	135209677	135209677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	135209677	C	T	135209677	3	4	645	1	0	0	0	0	1	0	0	0	9933	838	29	2	198	2	MTG1	10	135209677	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5299145	135209677	325070	113	38454											
OR51G2	81282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4936273	4936273	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	4936273	G	A	4936273	2	1	645	1	0	0	0	0	0	0	0	1	11106	1277	45	2		2	OR51G2	11	4936273	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		4936273	130070243	114	38455											
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9451343	9451343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	9451343	G	A	9451343	3	1	645	1	0	0	0	0	1	0	0	0	7804	943	33	2	1772	2	IPO7	11	9451343	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	4515070	9451343	125555173	115	38456											
COPB1	1315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	14501121	14501121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	14501121	G	C	14501121	3	2	645	1	0	0	0	0	1	0	0	0	3730	942	33	4	1557	4	COPB1	11	14501121	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	5049778	14501121	120505395	116	38457											
RAG2	5897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	36614896	36614896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	36614896	C	T	36614896	3	4	645	1	0	0	0	0	1	0	0	0	13018	594	21	2	764	2	RAG2	11	36614896	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	22113775	36614896	98391620	117	38458											
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56468116	56468116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	56468116	A	G	56468116	3	3	645	1	0	0	0	0	1	0	0	0	11259	217	8	3	255	3	OR9G9	11	56468116	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	19853220	56468116	78538400	118	38459											
LPXN	9404	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58295114	58295114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	58295114	C	T	58295114	3	4	645	1	0	0	0	0	1	0	0	0	8936	652	23	1	190	1	LPXN	11	58295114	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1826998	58295114	76711402	119	38460											
OR4D11	219986	hgsc.bcm.edu;broad.mit.edu	37	11	59271133	59271133	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	59271133	C	G	59271133	3	3	645	1	0	0	0	0	1	0	0	0	11062	913	32	4	87	4	OR4D11	11	59271133	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	976019	59271133	75735383	120	38461											
GSTP1	2950	ucsc.edu	37	11	67352042	67352042	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	67352042	G	C	67352042	5	2	645	1	0	0	0	0	0	0	1	0	6851	1159	40	4	155	4	GSTP1	11	67352042	Splice_Site	SNP	G	TCGA-HE-7130-01A-11D-1961-08	8080909	67352042	67654474	121	38462											
LRP5	4041	broad.mit.edu;bcgsc.ca	37	11	68197137	68197137	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	68197137	C	T	68197137	2	4	645	1	0	0	0	0	0	0	0	1	8967	871	31	1		1	LRP5	11	68197137	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	845095	68197137	66809379	122	38463											
NARS2	79731	hgsc.bcm.edu	37	11	78154732	78154732	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	78154732	G	C	78154732	3	2	645	1	0	0	0	0	1	0	0	0	10178	1348	47	4	208	4	NARS2	11	78154732	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9957595	78154732	56851784	123	38464											
FAM181B	220382	broad.mit.edu	37	11	82444012	82444012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	82444012	C	T	82444012	3	4	645	1	0	0	0	0	1	0	0	0	5513	884	31	1	524	1	FAM181B	11	82444012	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4289280	82444012	52562504	124	38465											
CREBZF	58487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	85375684	85375684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	85375684	G	A	85375684	3	1	645	1	0	0	0	0	1	0	0	0	3865	1174	41	2	832	2	CREBZF	11	85375684	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	2931672	85375684	49630832	125	38466											
MTMR2	8898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	95621408	95621408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	95621408	G	A	95621408	3	1	645	1	0	0	0	0	1	0	0	0	9951	1294	45	2	1889	2	MTMR2	11	95621408	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10245724	95621408	39385108	126	38467											
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102080284	102080284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	102080284	C	G	102080284	3	3	645	1	0	0	0	0	1	0	0	0	17478	855	30	4	1055	4	YAP1	11	102080284	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	6458876	102080284	32926232	127	38468											
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102098224	102098224	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	102098224	G	C	102098224	3	2	645	1	0	0	0	0	1	0	0	0	17478	933	33	4	1230	4	YAP1	11	102098224	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	17940	102098224	32908292	128	38469											
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113856896	113856896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	113856896	A	G	113856896	3	3	645	1	0	0	0	0	1	0	0	0	7451	463	16	3	770	3	HTR3A	11	113856896	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	11758672	113856896	21149620	129	38470											
PCSK7	9159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117097976	117097976	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	117097976	C	A	117097976	2	1	645	1	0	0	0	0	0	0	0	1	11612	581	21	4		4	PCSK7	11	117097976	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3241080	117097976	17908540	130	38471											
HSPA8	3312	bcgsc.ca	37	11	122929378	122929379	+	In_Frame_Ins	INS	-	-	TACTCT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	TACTCT	122929379	-	TACTCT	122929378	7	5	645	1	0	1	1	0	0	0	0	0	7423	1145	40	0	468	0	HSPA8	11	122929378	In_Frame_Ins	INS	-	TCGA-HE-7130-01A-11D-1961-08	5831402	122929378	12077138	131	38472											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6167128	6167128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	6167128	G	C	6167128	3	2	645	1	0	0	0	0	1	0	0	0	17258	942	33	4	6981	4	VWF	12	6167128	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		6167128	127684767	132	38473											
CAPRIN2	65981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	30906661	30906661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	30906661	C	G	30906661	3	3	645	1	0	0	0	0	1	0	0	0	2638	893	31	4	3418	4	CAPRIN2	12	30906661	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	24739533	30906661	102945234	133	38474											
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40422219	40422219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	40422219	C	T	40422219	3	4	645	1	0	0	0	0	1	0	0	0	14555	855	30	2	1169	2	SLC2A13	12	40422219	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	9515558	40422219	93429676	134	38475											
DDX23	9416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49231830	49231830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	49231830	C	T	49231830	3	4	645	1	0	0	0	0	1	0	0	0	4352	835	29	2	1996	2	DDX23	12	49231830	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	8809611	49231830	84620065	135	38476											
SPATS2	65244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49916614	49916614	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	49916614	G	C	49916614	3	2	645	1	0	0	0	0	1	0	0	0	15031	933	33	4	1127	4	SPATS2	12	49916614	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	684784	49916614	83935281	136	38477											
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53607847	53607847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	53607847	A	G	53607847	3	3	645	1	0	0	0	0	1	0	0	0	13067	333	12	3	571	3	RARG	12	53607847	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	3691233	53607847	80244048	137	38478											
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	64061939	64061939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	64061939	G	A	64061939	3	1	645	1	0	0	0	0	1	0	0	0	4743	942	33	2	2129	2	DPY19L2	12	64061939	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10454092	64061939	69789956	138	38479											
LLPH	84298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	66522754	66522754	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	66522754	G	A	66522754	4	1	645	1	0	0	0	0	0	1	0	0	8842	1299	45	2	264	2	LLPH	12	66522754	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	2460815	66522754	67329141	139	38480											
AMDHD1	144193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	96354342	96354342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	96354342	G	C	96354342	3	2	645	1	0	0	0	0	1	0	0	0	567	942	33	4	772	4	AMDHD1	12	96354342	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	29831588	96354342	37497553	140	38481											
C12orf42	374470	broad.mit.edu	37	12	103699754	103699754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	103699754	G	A	103699754	3	1	645	1	0	0	0	0	1	0	0	0	1690	942	33	2	461	2	C12orf42	12	103699754	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	7345412	103699754	30152141	141	38482											
KSR2	283455	broad.mit.edu	37	12	118293234	118293234	+	Silent	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	118293234	T	C	118293234	2	2	645	1	0	0	0	0	0	0	0	1	8589	1594	55	3		3	KSR2	12	118293234	Silent	SNP	T	TCGA-HE-7130-01A-11D-1961-08	14593480	118293234	15558661	142	38483											
P2RX4	5025	broad.mit.edu;bcgsc.ca	37	12	121648006	121648006	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	121648006	C	T	121648006	2	4	645	1	0	0	0	0	0	0	0	1	11349	883	31	1		1	P2RX4	12	121648006	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3354772	121648006	12203889	143	38484											
UTP14C	9724	hgsc.bcm.edu;broad.mit.edu	37	13	52603705	52603705	+	Silent	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	52603705	G	C	52603705	2	2	645	1	0	0	0	0	0	0	0	1	17108	1277	45	4		4	UTP14C	13	52603705	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		52603705	62566173	144	38485											
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	53624805	53624805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	53624805	G	C	53624805	3	2	645	1	0	0	0	0	1	0	0	0	10862	1029	36	4	1450	4	OLFM4	13	53624805	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1021100	53624805	61545073	145	38486											
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	61986466	61986467	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	TT	61986467	CC	TT	61986466	3	4	645	1	0	0	0	0	1	0	0	0	11522	855	30	2	1093	2	PCDH20	13	61986466	Missense_Mutation	DNP	CC	TCGA-HE-7130-01A-11D-1961-08	8361661	61986466	53183412	146	38487											
RBM26	64062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	79945132	79945132	+	Silent	SNP	C	C	T	rs199797508		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	79945132	C	T	79945132	2	4	645	1	0	0	0	0	0	0	0	1	13139	912	32	2		2	RBM26	13	79945132	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	17958666	79945132	35224746	147	38488											
CIDEB	27141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24775203	24775203	+	Silent	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	24775203	G	C	24775203	2	2	645	1	0	0	0	0	0	0	0	1	3428	929	33	4		4	CIDEB	14	24775203	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		24775203	82574337	148	38489											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45642339	45642339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	45642339	C	G	45642339	3	3	645	1	0	0	0	0	1	0	0	0	5678	827	29	4	2292	4	FANCM	14	45642339	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	20867136	45642339	61707201	149	38490											
ZBTB1	22890	hgsc.bcm.edu	37	14	64989477	64989477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	64989477	G	C	64989477	3	2	645	1	0	0	0	0	1	0	0	0	17534	1291	45	4	1257	4	ZBTB1	14	64989477	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	19347138	64989477	42360063	150	38491											
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70633987	70633987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	70633987	C	T	70633987	3	4	645	1	0	0	0	0	1	0	0	0	14721	893	31	1	1769	1	SLC8A3	14	70633987	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5644510	70633987	36715553	151	38492											
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73720491	73720491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	73720491	C	T	73720491	3	4	645	1	0	0	0	0	1	0	0	0	11435	838	29	2	1081	2	PAPLN	14	73720491	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3086504	73720491	33629049	152	38493											
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	86088747	86088747	+	Missense_Mutation	SNP	G	G	C	rs199966508	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	86088747	G	C	86088747	3	2	645	1	0	0	0	0	1	0	0	0	5946	1290	45	4	891	4	FLRT2	14	86088747	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	12368256	86088747	21260793	153	38494											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89161727	89161727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	89161727	C	T	89161727	3	4	645	1	0	0	0	0	1	0	0	0	5102	690	24	2	3629	2	EML5	14	89161727	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3072980	89161727	18187813	154	38495											
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	103932113	103932113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	103932113	G	C	103932113	3	2	645	1	0	0	0	0	1	0	0	0	9321	1290	45	4	790	4	MARK3	14	103932113	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	14770386	103932113	3417427	155	38496											
MARK3	4140	ucsc.edu	37	14	103932725	103932725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	103932725	G	A	103932725	3	1	645	1	0	0	0	0	1	0	0	0	9321	1291	45	2	981	2	MARK3	14	103932725	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	612	103932725	3416815	156	38497											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105409722	105409722	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	105409722	G	A	105409722	2	1	645	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105409722	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1476997	105409722	1939818	157	38498											
ZFYVE19	84936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41099974	41099974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	41099974	G	A	41099974	3	1	645	1	0	0	0	0	1	0	0	0	17677	1290	45	2	189	2	ZFYVE19	15	41099974	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		41099974	61431418	158	38499											
ZFYVE19	84936	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41100015	41100015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	41100015	G	A	41100015	3	1	645	1	0	0	0	0	1	0	0	0	17677	1348	47	2	230	2	ZFYVE19	15	41100015	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	41	41100015	61431377	159	38500											
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41384347	41384347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	41384347	C	A	41384347	3	1	645	1	0	0	0	0	1	0	0	0	7753	826	29	4	4383	4	INO80	15	41384347	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	284332	41384347	61147045	160	38501											
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50906430	50906430	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	50906430	G	C	50906430	3	2	645	1	0	0	0	0	1	0	0	0	16603	933	33	4	4176	4	TRPM7	15	50906430	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9522083	50906430	51624962	161	38502											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51773559	51773559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	51773559	G	A	51773559	3	1	645	1	0	0	0	0	1	0	0	0	4597	942	33	2	3449	2	DMXL2	15	51773559	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	867129	51773559	50757833	162	38503											
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86269660	86269660	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	86269660	C	G	86269660	2	3	645	1	0	0	0	0	0	0	0	1	449	813	29	4		4	AKAP13	15	86269660	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	34496101	86269660	16261732	163	38504											
PRC1	9055	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91524227	91524227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	91524227	C	T	91524227	3	4	645	1	0	0	0	0	1	0	0	0	12456	835	29	2	1193	2	PRC1	15	91524227	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5254567	91524227	11007165	164	38505											
ZNF689	115509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30616559	30616559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	30616559	A	G	30616559	3	3	645	1	0	0	0	0	1	0	0	0	18106	362	13	3	977	3	ZNF689	16	30616559	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08		30616559	59738194	165	38506											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30749163	30749163	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	30749163	C	G	30749163	3	3	645	1	0	0	0	0	1	0	0	0	15147	913	32	4	7928	4	SRCAP	16	30749163	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	132604	30749163	59605590	166	38507											
BBS2	583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56518732	56518732	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	56518732	G	A	56518732	4	1	645	1	0	0	0	0	0	1	0	0	1338	1066	37	1	62	1	BBS2	16	56518732	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	25769569	56518732	33836021	167	38508											
CMTM2	146225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	66614056	66614056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	66614056	G	C	66614056	3	2	645	1	0	0	0	0	1	0	0	0	3585	942	33	4	419	4	CMTM2	16	66614056	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10095324	66614056	23740697	168	38509											
AARS	16	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70316659	70316659	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	70316659	G	C	70316659	3	2	645	1	0	0	0	0	1	0	0	0	19	942	33	4	2978	4	AARS	16	70316659	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3702603	70316659	20038094	169	38510											
HYDIN	54768	broad.mit.edu;bcgsc.ca	37	16	70896078	70896078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	70896078	C	T	70896078	3	4	645	1	0	0	0	0	1	0	0	0	7474	893	31	1	3787	1	HYDIN	16	70896078	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	579419	70896078	19458675	170	38511											
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1586885	1586885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	1586885	G	C	1586885	3	2	645	1	0	0	0	0	1	0	0	0	12585	1066	37	4	6960	4	PRPF8	17	1586885	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		1586885	79608325	171	38512											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3926086	3926086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	3926086	G	C	3926086	3	2	645	1	0	0	0	0	1	0	0	0	18267	1299	45	4	1804	4	ZZEF1	17	3926086	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	2339201	3926086	77269124	172	38513											
TRPV2	51393	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	16330054	16330054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	16330054	G	A	16330054	3	1	645	1	0	0	0	0	1	0	0	0	16608	1145	40	1	1136	1	TRPV2	17	16330054	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	12403968	16330054	64865156	173	38514											
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	17046031	17046031	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	-	17046031	C	-	17046031	7	5	645	1	0	1	0	1	0	0	0	0	9750	767	27	0	1017	0	MPRIP	17	17046031	Frame_Shift_Del	DEL	C	TCGA-HE-7130-01A-11D-1961-08	715977	17046031	64149179	174	38515											
ZNF286B	729288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18565401	18565401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	18565401	C	T	18565401	3	4	645	1	0	0	0	0	1	0	0	0	17836	855	30	2	154	2	ZNF286B	17	18565401	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1519370	18565401	62629809	175	38516			2	82		2	2	13	C		8.605208e-05
ZNF286B	729288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18565413	18565413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	18565413	C	T	18565413	3	4	645	1	0	0	0	0	1	0	0	0	17836	478	17	2	166	2	ZNF286B	17	18565413	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	12	18565413	62629797	176	38517			2	82		2	2	13	C		8.605208e-05
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	37949078	37949078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	37949078	C	T	37949078	3	4	645	1	0	0	0	0	1	0	0	0	7623	913	32	2	1277	2	IKZF3	17	37949078	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	19383665	37949078	43246132	177	38518											
HAP1	9001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39887800	39887800	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	39887800	G	A	39887800	2	1	645	1	0	0	0	0	0	0	0	1	6960	1045	37	1		1	HAP1	17	39887800	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1938722	39887800	41307410	178	38519											
UBTF	7343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42293042	42293042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	42293042	C	T	42293042	3	4	645	1	0	0	0	0	1	0	0	0	16921	864	30	2	1908	2	UBTF	17	42293042	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	2405242	42293042	38902168	179	38520											
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46239837	46239837	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	46239837	C	G	46239837	2	3	645	1	0	0	0	0	0	0	0	1	14368	813	29	4		4	SKAP1	17	46239837	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3946795	46239837	34955373	180	38521											
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72338804	72338804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	72338804	C	G	72338804	3	3	645	1	0	0	0	0	1	0	0	0	8289	874	31	4	281	4	KIF19	17	72338804	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	26098967	72338804	8856406	181	38522											
EIF4A3	9775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	78120725	78120725	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	78120725	C	G	78120725	2	3	645	1	0	0	0	0	0	0	0	1	5028	639	23	4		4	EIF4A3	17	78120725	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5781921	78120725	3074485	182	38523											
MIB1	57534	broad.mit.edu;bcgsc.ca	37	18	19399507	19399507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	19399507	G	A	19399507	3	1	645	1	0	0	0	0	1	0	0	0	9573	1290	45	2	1775	2	MIB1	18	19399507	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		19399507	58677741	183	38524											
HRH4	59340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	22048831	22048831	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	22048831	C	T	22048831	2	4	645	1	0	0	0	0	0	0	0	1	7365	813	29	2		2	HRH4	18	22048831	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	2649324	22048831	56028417	184	38525											
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	23866009	23866009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	23866009	C	T	23866009	3	4	645	1	0	0	0	0	1	0	0	0	15539	838	29	2	1162	2	TAF4B	18	23866009	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1817178	23866009	54211239	185	38526											
DOK6	220164	hgsc.bcm.edu;broad.mit.edu	37	18	67266711	67266711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	67266711	C	G	67266711	3	3	645	1	0	0	0	0	1	0	0	0	4703	893	31	4	276	4	DOK6	18	67266711	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	43400702	67266711	10810537	186	38527											
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	879943	G	C	879943	3	2	645	1	0	0	0	0	1	0	0	0	9441	1136	40	4	1322	4	MED16	19	879943	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		879943	58249040	187	38528											
ATP8B3	148229	ucsc.edu;bcgsc.ca	37	19	1811677	1811677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	1811677	G	T	1811677	3	4	645	1	0	0	0	0	1	0	0	0	1196	1000	35	4	4003	4	ATP8B3	19	1811677	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	931734	1811677	57317306	188	38529											
NFIC	4782	ucsc.edu	37	19	3435161	3435161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	3435161	C	T	3435161	3	4	645	1	0	0	0	0	1	0	0	0	10379	893	31	1	943	1	NFIC	19	3435161	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1623484	3435161	55693822	189	38530											
TRIP10	9322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6743264	6743264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	6743264	G	C	6743264	3	2	645	1	0	0	0	0	1	0	0	0	16566	933	33	4	423	4	TRIP10	19	6743264	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3308103	6743264	52385719	190	38531											
NR2F6	2063	broad.mit.edu	37	19	17355929	17355929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	17355929	G	A	17355929	3	1	645	1	0	0	0	0	1	0	0	0	10636	1059	37	1	1129	1	NR2F6	19	17355929	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10612665	17355929	41773054	191	38532											
WDR88	126248	hgsc.bcm.edu	37	19	33635808	33635808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	33635808	T	C	33635808	3	2	645	1	0	0	0	0	1	0	0	0	17347	1638	57	3	456	3	WDR88	19	33635808	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	16279879	33635808	25493175	192	38533											
NCCRP1	342897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39691364	39691364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	39691364	G	A	39691364	3	1	645	1	0	0	0	0	1	0	0	0	10220	1058	37	1	818	1	NCCRP1	19	39691364	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	6055556	39691364	19437619	193	38534											
AKT2	208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40741033	40741033	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	40741033	G	C	40741033	3	2	645	1	0	0	0	0	1	0	0	0	480	1299	45	4	168	4	AKT2	19	40741033	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1049669	40741033	18387950	194	38535											
C19orf47	126526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40832303	40832303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	40832303	T	C	40832303	3	2	645	1	0	0	0	0	1	0	0	0	1932	1725	60	3	639	3	C19orf47	19	40832303	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	91270	40832303	18296680	195	38536											
LYPD3	27076	hgsc.bcm.edu	37	19	43967362	43967362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	43967362	T	C	43967362	3	2	645	1	0	0	0	0	1	0	0	0	9118	1638	57	3	588	3	LYPD3	19	43967362	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	3135059	43967362	15161621	196	38537											
ALDH16A1	126133	ucsc.edu	37	19	49969068	49969068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	49969068	C	T	49969068	3	4	645	1	0	0	0	0	1	0	0	0	488	643	23	1	1692	1	ALDH16A1	19	49969068	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	6001706	49969068	9159915	197	38538											
KLK10	5655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51518766	51518766	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	51518766	G	T	51518766	2	4	645	1	0	0	0	0	0	0	0	1	8405	1164	41	4		4	KLK10	19	51518766	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1549698	51518766	7610217	198	38539											
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53643875	53643875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	53643875	G	T	53643875	3	4	645	1	0	0	0	0	1	0	0	0	17873	1261	44	4	317	4	ZNF347	19	53643875	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	2125109	53643875	5485108	199	38540											
MYADM	91663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54377552	54377552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	54377552	C	T	54377552	3	4	645	1	0	0	0	0	1	0	0	0	10013	913	32	2	771	2	MYADM	19	54377552	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	733677	54377552	4751431	200	38541											
NLRP7	199713	broad.mit.edu	37	19	55450843	55450843	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	55450843	G	A	55450843	2	1	645	1	0	0	0	0	0	0	0	1	10489	1165	41	2		2	NLRP7	19	55450843	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1073291	55450843	3678140	201	38542											
GALP	85569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56694579	56694579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	56694579	G	C	56694579	3	2	645	1	0	0	0	0	1	0	0	0	6233	1174	41	4	307	4	GALP	19	56694579	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1243736	56694579	2434404	202	38543											
USP29	57663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57641187	57641187	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	57641187	G	C	57641187	3	2	645	1	0	0	0	0	1	0	0	0	17071	942	33	4	1146	4	USP29	19	57641187	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	946608	57641187	1487796	203	38544											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40033767	40033767	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	40033767	G	A	40033767	2	1	645	1	0	0	0	0	0	0	0	1	3331	1277	45	2		2	CHD6	20	40033767	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		40033767	22991753	204	38545											
CHD6	84181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40050320	40050320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	40050320	G	A	40050320	3	1	645	1	0	0	0	0	1	0	0	0	3331	1294	45	2	3220	2	CHD6	20	40050320	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	16553	40050320	22975200	205	38546											
PTPN1	5770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49195155	49195155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	49195155	T	G	49195155	3	3	645	1	0	0	0	0	1	0	0	0	12790	1580	55	5	713	5	PTPN1	20	49195155	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	9144835	49195155	13830365	206	38547											
HRH3	11255	broad.mit.edu	37	20	60791561	60791561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	60791561	G	A	60791561	3	1	645	1	0	0	0	0	1	0	0	0	7364	1087	38	1	502	1	HRH3	20	60791561	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	11596406	60791561	2233959	207	38548											
DIP2A	23181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47978259	47978259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	47978259	G	A	47978259	3	1	645	1	0	0	0	0	1	0	0	0	4529	1145	40	1	4161	1	DIP2A	21	47978259	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		47978259	151636	208	38549											
SERPIND1	3053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21140297	21140297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	21140297	G	A	21140297	3	1	645	1	0	0	0	0	1	0	0	0	14123	1058	37	1	1179	1	SERPIND1	22	21140297	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		21140297	30164269	209	38550											
SERPIND1	3053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21140328	21140328	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	21140328	G	A	21140328	2	1	645	1	0	0	0	0	0	0	0	1	14123	933	33	2		2	SERPIND1	22	21140328	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	31	21140328	30164238	210	38551											
SEZ6L	23544	broad.mit.edu	37	22	26702084	26702084	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	26702084	G	A	26702084	2	1	645	1	0	0	0	0	0	0	0	1	14156	933	33	2		2	SEZ6L	22	26702084	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	5561756	26702084	24602482	211	38552											
MCM5	4174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35806777	35806777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	35806777	A	G	35806777	3	3	645	1	0	0	0	0	1	0	0	0	9397	217	8	3	815	3	MCM5	22	35806777	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	9104693	35806777	15497789	212	38553											
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36696256	36696256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	36696256	C	G	36696256	3	3	645	1	0	0	0	0	1	0	0	0	10049	864	30	4	3065	4	MYH9	22	36696256	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	889479	36696256	14608310	213	38554											
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu	37	22	50687534	50687534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	G	50687534	C	G	50687534	3	3	645	1	0	0	0	0	1	0	0	0	7012	835	29	4	1307	4	HDAC10	22	50687534	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	13991278	50687534	617032	214	38555											
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	43655117	43655117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	43655117	C	T	43655117	3	4	645	1	0	0	0	0	1	0	0	0	9233	661	23	1	961	1	MAOB	23	43655117	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		43655117	111615443	215	38556											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44870205	44870205	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	44870205	G	C	44870205	5	2	645	1	0	0	0	0	0	0	1	0	8144	956	33	4	402	4	KDM6A	23	44870205	Splice_Site	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1215088	44870205	110400355	216	38557											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	44969446	44969447	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	-	44969447	AC	-	44969446	7	5	645	1	0	1	0	1	0	0	0	0	8144	40	2	0	4238	0	KDM6A	23	44969446	Frame_Shift_Del	DEL	AC	TCGA-HE-7130-01A-11D-1961-08	99241	44969446	110301114	217	38558											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53641559	53641559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	53641559	C	T	53641559	3	4	645	1	0	0	0	0	1	0	0	0	7468	922	32	2	11175	2	HUWE1	23	53641559	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	8672113	53641559	101629001	218	38559											
ERCC6L	54821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	71426809	71426809	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	71426809	G	C	71426809	4	2	645	1	0	0	0	0	0	1	0	0	5220	1294	45	4	1948	4	ERCC6L	23	71426809	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	17785250	71426809	83843751	219	38560											
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71886083	71886083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	A	71886083	G	A	71886083	3	1	645	1	0	0	0	0	1	0	0	0	11850	1294	45	2	2989	2	PHKA1	23	71886083	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	459274	71886083	83384477	220	38561											
GPRASP2	114928	broad.mit.edu;bcgsc.ca	37	X	101971025	101971025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	C	101971025	G	C	101971025	3	2	645	1	0	0	0	0	1	0	0	0	6730	1291	45	4	1230	4	GPRASP2	23	101971025	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	30084942	101971025	53299535	221	38562											
PGRMC1	10857	broad.mit.edu;bcgsc.ca	37	X	118370497	118370497	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	118370497	C	T	118370497	2	4	645	1	0	0	0	0	0	0	0	1	11813	767	27	1		1	PGRMC1	23	118370497	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	16399472	118370497	36900063	222	38563											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123202456	123202456	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	T	123202456	C	T	123202456	4	4	645	1	0	0	0	0	0	1	0	0	15255	827	29	2	2394	2	STAG2	23	123202456	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4831959	123202456	32068104	223	38564											
AGRN	375790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	957703	957703	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	957703	C	A	957703	2	1	646	1	0	0	0	0	0	0	0	1	397	581	21	4		4	AGRN	1	957703	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		957703	248292918	1	38565											
OTUD3	23252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20233031	20233031	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	20233031	T	C	20233031	2	2	646	1	0	0	0	0	0	0	0	1	11320	1461	51	3		3	OTUD3	1	20233031	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	19275328	20233031	229017590	2	38566											
KANK4	163782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62739262	62739262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	62739262	C	T	62739262	3	4	646	1	0	0	0	0	1	0	0	0	7986	739	26	2	1505	2	KANK4	1	62739262	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	42506231	62739262	186511359	3	38567											
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85648463	85648463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	85648463	A	T	85648463	3	4	646	1	0	0	0	0	1	0	0	0	15448	72	3	5	1742	5	SYDE2	1	85648463	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	22909201	85648463	163602158	4	38568											
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156851384	156851384	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	156851384	C	T	156851384	2	4	646	1	0	0	0	0	0	0	0	1	10713	796	28	2		2	NTRK1	1	156851384	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	71202921	156851384	92399237	5	38569											
HSPA6	3310	broad.mit.edu	37	1	161495204	161495204	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	161495204	G	A	161495204	2	1	646	1	0	0	0	0	0	0	0	1	7422	1161	41	2		2	HSPA6	1	161495204	Silent	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	4643820	161495204	87755417	6	38570											
ARHGEF4	50649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	131801154	131801154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	-	131801154	A	-	131801154	7	5	646	1	0	1	0	1	0	0	0	0	908	247	9	0	1631	0	ARHGEF4	2	131801154	Frame_Shift_Del	DEL	A	TCGA-HE-A5NF-01A-11D-A26P-10		131801154	111398219	7	38571											
ERMN	57471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	158178038	158178038	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	158178038	T	A	158178038	3	1	646	1	0	0	0	0	1	0	0	0	5237	1606	56	5	258	5	ERMN	2	158178038	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	26376884	158178038	85021335	8	38572											
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170762609	170762609	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	170762609	T	A	170762609	3	1	646	1	0	0	0	0	1	0	0	0	16915	1609	56	5	1752	5	UBR3	2	170762609	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	12584571	170762609	72436764	9	38573											
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220416332	220416332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	220416332	G	T	220416332	3	4	646	1	0	0	0	0	1	0	0	0	10820	1348	47	4	96	4	OBSL1	2	220416332	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	49653723	220416332	22783041	10	38574											
SNED1	25992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242026825	242026825	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	242026825	A	T	242026825	2	4	646	1	0	0	0	0	0	0	0	1	14858	291	11	5		5	SNED1	2	242026825	Silent	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	21610493	242026825	1172548	11	38575											
SRGAP3	9901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9100033	9100033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	9100033	G	T	9100033	3	4	646	1	0	0	0	0	1	0	0	0	15159	991	35	4	2473	4	SRGAP3	3	9100033	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		9100033	188922397	12	38576											
TBC1D5	9779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	17550057	17550057	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	17550057	A	G	17550057	2	3	646	1	0	0	0	0	0	0	0	1	15635	340	12	3		3	TBC1D5	3	17550057	Silent	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	8450024	17550057	180472373	13	38577											
ZNF445	353274	ucsc.edu;bcgsc.ca	37	3	44492934	44492934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	44492934	C	T	44492934	3	4	646	1	0	0	0	0	1	0	0	0	17930	507	18	2	2645	2	ZNF445	3	44492934	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	26942877	44492934	153529496	14	38578											
MST1	4485	broad.mit.edu	37	3	49723112	49723112	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	-	49723112	T	-	49723112	7	5	646	1	0	1	0	1	0	0	0	0	9897	1725	60	0	905	0	MST1	3	49723112	Frame_Shift_Del	DEL	T	TCGA-HE-A5NF-01A-11D-A26P-10	5230178	49723112	148299318	15	38579											
RPL24	6152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101404668	101404668	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	101404668	T	C	101404668	2	2	646	1	0	0	0	0	0	0	0	1	13585	1654	58	3		3	RPL24	3	101404668	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	51681556	101404668	96617762	16	38580											
ZBTB20	26137	broad.mit.edu	37	3	114070690	114070690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	114070690	G	A	114070690	3	1	646	1	0	0	0	0	1	0	0	0	17541	1290	45	2	1998	2	ZBTB20	3	114070690	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	12666022	114070690	83951740	17	38581											
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	136060303	136060303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	136060303	T	A	136060303	3	1	646	1	0	0	0	0	1	0	0	0	15254	1780	62	5	255	5	STAG1	3	136060303	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	21989613	136060303	61962127	18	38582											
UBE2K	3093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39757353	39757353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	39757353	A	G	39757353	3	3	646	1	0	0	0	0	1	0	0	0	16874	333	12	3	307	3	UBE2K	4	39757353	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10		39757353	151396923	19	38583											
OCIAD2	132299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48887522	48887522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	48887522	G	T	48887522	3	4	646	1	0	0	0	0	1	0	0	0	10825	1020	36	4	24	4	OCIAD2	4	48887522	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	9130169	48887522	142266754	20	38584											
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	88536953	G	A	88536953	3	1	646	1	0	0	0	0	1	0	0	0	4784	1058	37	1	3153	1	DSPP	4	88536953	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	39649431	88536953	102617323	21	38585											
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100231924	100231924	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	100231924	T	C	100231924	2	2	646	1	0	0	0	0	0	0	0	1	308	1838	64	3		3	ADH1B	4	100231924	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	11694971	100231924	90922352	22	38586											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	126408614	126408614	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	-	126408614	A	-	126408614	7	5	646	1	0	1	0	1	0	0	0	0	5699	247	9	0	12993	0	FAT4	4	126408614	Frame_Shift_Del	DEL	A	TCGA-HE-A5NF-01A-11D-A26P-10	26176690	126408614	64745662	23	38587											
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1394869	1394869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	1394869	C	T	1394869	3	4	646	1	0	0	0	0	1	0	0	0	14698	768	27	1	22	1	SLC6A3	5	1394869	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		1394869	179520391	24	38588											
MED10	84246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	6378594	6378594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	6378594	C	A	6378594	3	1	646	1	0	0	0	0	1	0	0	0	9433	594	21	4	420	4	MED10	5	6378594	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	4983725	6378594	174536666	25	38589											
MEGF10	84466	hgsc.bcm.edu;ucsc.edu	37	5	126790286	126790286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	126790286	G	T	126790286	3	4	646	1	0	0	0	0	1	0	0	0	9467	1348	47	4	3095	4	MEGF10	5	126790286	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	120411692	126790286	54124974	26	38590											
CTNNA1	1495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	138118896	138118897	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	-	138118897	GG	-	138118896	7	5	646	1	0	1	0	1	0	0	0	0	4014	1000	35	0	142	0	CTNNA1	5	138118896	Frame_Shift_Del	DEL	GG	TCGA-HE-A5NF-01A-11D-A26P-10	11328610	138118896	42796364	27	38591											
SPINK13	153218	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147661756	147661756	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	147661756	C	T	147661756	2	4	646	1	0	0	0	0	0	0	0	1	15070	477	17	2		2	SPINK13	5	147661756	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	9542860	147661756	33253504	28	38592											
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156908922	156908922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	156908922	C	A	156908922	3	1	646	1	0	0	0	0	1	0	0	0	240	680	24	4	184	4	ADAM19	5	156908922	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	9247166	156908922	24006338	29	38593											
FLT4	2324	broad.mit.edu	37	5	180055903	180055903	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	180055903	T	G	180055903	3	3	646	1	0	0	0	0	1	0	0	0	5951	1638	57	5	3109	5	FLT4	5	180055903	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	23146981	180055903	859357	30	38594											
PRRT1	80863	bcgsc.ca	37	6	32119881	32119881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	32119881	C	T	32119881	3	4	646	1	0	0	0	0	1	0	0	0	12619	841	29	2		2	PRRT1	6	32119881	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		32119881	138995186	31	38595											
UNC5CL	222643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41000635	41000635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	41000635	A	G	41000635	3	3	646	1	0	0	0	0	1	0	0	0	17006	391	14	3	643	3	UNC5CL	6	41000635	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	8880754	41000635	130114432	32	38596											
DEFB110	245913	hgsc.bcm.edu;broad.mit.edu	37	6	49986835	49986835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	49986835	T	G	49986835	3	3	646	1	0	0	0	0	1	0	0	0	4402	1841	64	5	284	5	DEFB110	6	49986835	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	8986200	49986835	121128232	33	38597											
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	122766258	122766258	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	122766258	C	G	122766258	3	3	646	1	0	0	0	0	1	0	0	0	14092	856	30	4	72	4	SERINC1	6	122766258	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	72779423	122766258	48348809	34	38598											
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	44150535	44150535	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	-	44150535	G	-	44150535	7	5	646	1	0	1	0	1	0	0	0	0	349	991	35	0	1559	0	AEBP1	7	44150535	Frame_Shift_Del	DEL	G	TCGA-HE-A5NF-01A-11D-A26P-10		44150535	114988128	35	38599											
POM121C	100101267	broad.mit.edu;bcgsc.ca	37	7	75054953	75054953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	75054953	G	A	75054953	3	1	646	1	0	0	0	0	1	0	0	0	12247	1348	47	2	2380	2	POM121C	7	75054953	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	30904418	75054953	84083710	36	38600											
DUSP26	78986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	33454873	33454873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	33454873	G	T	33454873	3	4	646	1	0	0	0	0	1	0	0	0	4825	1377	48	4	486	4	DUSP26	8	33454873	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		33454873	112909149	37	38601											
EFCAB1	79645	broad.mit.edu	37	8	49647656	49647656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	49647656	G	A	49647656	3	1	646	1	0	0	0	0	1	0	0	0	4935	1319	46	2	604	2	EFCAB1	8	49647656	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	16192783	49647656	96716366	38	38602											
CA13	377677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	86162972	86162972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	86162972	C	T	86162972	3	4	646	1	0	0	0	0	1	0	0	0	2516	681	24	2	47	2	CA13	8	86162972	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	36515316	86162972	60201050	39	38603											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	132002781	132002781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	132002781	G	A	132002781	3	1	646	1	0	0	0	0	1	0	0	0	300	1203	42	2	2855	2	ADCY8	8	132002781	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	45839809	132002781	14361241	40	38604											
TG	7038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	133899726	133899727	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	TA	133899727	-	TA	133899726	7	5	646	1	0	1	1	0	0	0	0	0	15825	805	28	0	2143	0	TG	8	133899726	Frame_Shift_Ins	INS	-	TCGA-HE-A5NF-01A-11D-A26P-10	1896945	133899726	12464296	41	38605											
RMI1	80010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86617525	86617525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	86617525	G	T	86617525	3	4	646	1	0	0	0	0	1	0	0	0	13408	942	33	4	1626	4	RMI1	9	86617525	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		86617525	54595906	42	38606											
LPAR1	1902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113704022	113704022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	113704022	G	A	113704022	3	1	646	1	0	0	0	0	1	0	0	0	8911	1144	40	1	630	1	LPAR1	9	113704022	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	27086497	113704022	27509409	43	38607											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131362363	131362363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	131362363	A	T	131362363	3	4	646	1	0	0	0	0	1	0	0	0	15129	246	9	5	3650	5	SPTAN1	9	131362363	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	17658341	131362363	9851068	44	38608											
LCN10	414332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139633991	139633991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	139633991	T	C	139633991	3	2	646	1	0	0	0	0	1	0	0	0	8688	1696	59	3	17	3	LCN10	9	139633991	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	8271628	139633991	1579440	45	38609											
CUBN	8029	broad.mit.edu	37	10	16941145	16941145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	16941145	G	C	16941145	3	2	646	1	0	0	0	0	1	0	0	0	4053	1280	45	4	2479	4	CUBN	10	16941145	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		16941145	118593602	46	38610											
NUDT13	25961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74879794	74879794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	74879794	G	T	74879794	3	4	646	1	0	0	0	0	1	0	0	0	10736	991	35	4	108	4	NUDT13	10	74879794	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	57938649	74879794	60654953	47	38611											
LZTS2	84445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102763858	102763858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	102763858	G	C	102763858	3	2	646	1	0	0	0	0	1	0	0	0	9146	942	33	4	1009	4	LZTS2	10	102763858	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	27884064	102763858	32770889	48	38612											
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	121338280	121338280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	121338280	A	C	121338280	3	2	646	1	0	0	0	0	1	0	0	0	15901	130	5	5	637	5	TIAL1	10	121338280	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	18574422	121338280	14196467	49	38613											
WDR11	55717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	122664157	122664157	+	Splice_Site	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	122664157	G	A	122664157	5	1	646	1	0	0	0	0	0	0	1	0	17285	956	33	2	3125	2	WDR11	10	122664157	Splice_Site	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	1325877	122664157	12870590	50	38614											
C11orf40	143501	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4592781	4592781	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	4592781	G	C	4592781	3	2	646	1	0	0	0	0	1	0	0	0	1641	1116	39	4	130	4	C11orf40	11	4592781	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		4592781	130413735	51	38615											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6646473	6646473	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	6646473	C	G	6646473	3	3	646	1	0	0	0	0	1	0	0	0	4289	855	30	4	2806	4	DCHS1	11	6646473	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	2053692	6646473	128360043	52	38616											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46898795	46898795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	46898795	T	C	46898795	3	2	646	1	0	0	0	0	1	0	0	0	8966	1464	51	3	2549	3	LRP4	11	46898795	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	40252322	46898795	88107721	53	38617											
AMOTL1	154810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94533391	94533391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	94533391	G	T	94533391	3	4	646	1	0	0	0	0	1	0	0	0	583	1348	47	4	1045	4	AMOTL1	11	94533391	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	47634596	94533391	40473125	54	38618											
TMBIM4	51643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	66546147	66546147	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	66546147	T	C	66546147	2	2	646	1	0	0	0	0	0	0	0	1	15994	1751	61	3		3	TMBIM4	12	66546147	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10		66546147	67305748	55	38619											
HPD	3242	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122281677	122281677	+	Missense_Mutation	SNP	T	T	G	rs201305943		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	122281677	T	G	122281677	3	3	646	1	0	0	0	0	1	0	0	0	7339	1812	63	5	300	5	HPD	12	122281677	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	55735530	122281677	11570218	56	38620											
ZNF140	7699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	133683062	133683062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	133683062	T	C	133683062	3	2	646	1	0	0	0	0	1	0	0	0	17741	1551	54	3	1213	3	ZNF140	12	133683062	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	11401385	133683062	168833	57	38621											
KCTD12	115207	hgsc.bcm.edu	37	13	77460122	77460122	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	77460122	C	G	77460122	2	3	646	1	0	0	0	0	0	0	0	1	8106	639	23	4		4	KCTD12	13	77460122	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		77460122	37709756	58	38622											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20845648	20845648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	20845648	G	T	20845648	3	4	646	1	0	0	0	0	1	0	0	0	15771	1174	41	4	2064	4	TEP1	14	20845648	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		20845648	86503892	59	38623											
CDH24	64403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23524349	23524349	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	23524349	T	A	23524349	4	1	646	1	0	0	0	0	0	1	0	0	3111	1821	63	5	2088	5	CDH24	14	23524349	Nonsense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	2678701	23524349	83825191	60	38624											
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24885037	24885037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	24885037	G	T	24885037	3	4	646	1	0	0	0	0	1	0	0	0	10803	1203	42	4	4112	4	NYNRIN	14	24885037	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	1360688	24885037	82464503	61	38625											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	75516201	75516205	+	Frame_Shift_Del	DEL	TGAAC	TGAAC	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	TGAAC	TGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	-	75516205	TGAAC	-	75516201	7	5	646	1	0	1	0	1	0	0	0	0	9625	1812	63	0	4251	0	MLH3	14	75516201	Frame_Shift_Del	DEL	TGAAC	TCGA-HE-A5NF-01A-11D-A26P-10	50631164	75516201	31833339	62	38626											
ATXN3	4287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	92549507	92549507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	92549507	G	C	92549507	3	2	646	1	0	0	0	0	1	0	0	0	1213	1029	36	4	534	4	ATXN3	14	92549507	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	17033306	92549507	14800033	63	38627											
ASPG	374569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104565246	104565246	+	Silent	SNP	C	C	T	rs200662335		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	104565246	C	T	104565246	2	4	646	1	0	0	0	0	0	0	0	1	1052	535	19	1		1	ASPG	14	104565246	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	12015739	104565246	2784294	64	38628											
TLE3	7090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	70368460	70368460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	70368460	T	A	70368460	3	1	646	1	0	0	0	0	1	0	0	0	15952	1580	55	5	2110	5	TLE3	15	70368460	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10		70368460	32162932	65	38629											
CYP11A1	1583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74640247	74640247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	74640247	A	T	74640247	3	4	646	1	0	0	0	0	1	0	0	0	4146	188	7	5	1178	5	CYP11A1	15	74640247	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	4271787	74640247	27891145	66	38630											
CHD2	1106	broad.mit.edu	37	15	93480801	93480801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	93480801	C	T	93480801	3	4	646	1	0	0	0	0	1	0	0	0	3327	710	25	2	515	2	CHD2	15	93480801	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	18840554	93480801	9050591	67	38631											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30734928	30734928	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	30734928	T	C	30734928	2	2	646	1	0	0	0	0	0	0	0	1	15147	1606	56	3		3	SRCAP	16	30734928	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10		30734928	59619825	68	38632											
AMFR	267	broad.mit.edu	37	16	56396896	56396896	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	56396896	A	G	56396896	2	3	646	1	0	0	0	0	0	0	0	1	571	175	7	3		3	AMFR	16	56396896	Silent	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	25661968	56396896	33957857	69	38633											
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56919183	56919183	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	56919183	A	C	56919183	3	2	646	1	0	0	0	0	1	0	0	0	14397	101	4	5	1890	5	SLC12A3	16	56919183	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	522287	56919183	33435570	70	38634											
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6526336	6526336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	6526336	G	C	6526336	3	2	646	1	0	0	0	0	1	0	0	0	8198	1124	39	4	1989	4	KIAA0753	17	6526336	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		6526336	74668874	71	38635											
SHBG	6462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7534128	7534128	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	7534128	C	G	7534128	3	3	646	1	0	0	0	0	1	0	0	0	14282	826	29	4	344	4	SHBG	17	7534128	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	1007792	7534128	73661082	72	38636											
SOCS7	30837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	36508826	36508826	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	36508826	C	A	36508826	2	1	646	1	0	0	0	0	0	0	0	1	14932	639	23	4		4	SOCS7	17	36508826	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	28974698	36508826	44686384	73	38637											
KRTAP4-7	100132476	hgsc.bcm.edu;ucsc.edu	37	17	39240796	39240796	+	Missense_Mutation	SNP	G	G	C	rs199957151		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	39240796	G	C	39240796	3	2	646	1	0	0	0	0	1	0	0	0	8562	971	34	4	340	4	KRTAP4-7	17	39240796	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	2731970	39240796	41954414	74	38638											
TOB1	10140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48940734	48940734	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	48940734	G	C	48940734	3	2	646	1	0	0	0	0	1	0	0	0	16359	1252	44	4	396	4	TOB1	17	48940734	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	9699938	48940734	32254476	75	38639											
ABCA8	10351	broad.mit.edu;bcgsc.ca	37	17	66878037	66878037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	66878037	C	A	66878037	3	1	646	1	0	0	0	0	1	0	0	0	38	797	28	4	992	4	ABCA8	17	66878037	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	17937303	66878037	14317173	76	38640											
TOMM40	10452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45397281	45397281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	45397281	G	A	45397281	3	1	646	1	0	0	0	0	1	0	0	0	16370	971	34	2	619	2	TOMM40	19	45397281	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		45397281	13731702	77	38641											
CNOT3	4849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54648053	54648053	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	A	54648053	G	A	54648053	2	1	646	1	0	0	0	0	0	0	0	1	3622	933	33	2		2	CNOT3	19	54648053	Silent	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	9250772	54648053	4480930	78	38642											
NKX2-2	4821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	21492814	21492814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	G	21492814	T	G	21492814	3	3	646	1	0	0	0	0	1	0	0	0	10457	1841	64	5	256	5	NKX2-2	20	21492814	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10		21492814	41532706	79	38643											
KCNG1	3755	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49621336	49621336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	49621336	C	T	49621336	3	4	646	1	0	0	0	0	1	0	0	0	8034	478	17	2	763	2	KCNG1	20	49621336	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	28128522	49621336	13404184	80	38644											
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37408418	37408418	+	Silent	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	C	37408418	G	C	37408418	2	2	646	1	0	0	0	0	0	0	0	1	14146	987	35	4		4	SETD4	21	37408418	Silent	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		37408418	10721477	81	38645											
MCM3AP	8888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47664760	47664760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	47664760	C	T	47664760	3	4	646	1	0	0	0	0	1	0	0	0	9395	652	23	1	967	1	MCM3AP	21	47664760	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	10256342	47664760	465135	82	38646											
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21119517	21119517	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	T	21119517	C	T	21119517	4	4	646	1	0	0	0	0	0	1	0	0	11880	740	26	2	4003	2	PI4KA	22	21119517	Nonsense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		21119517	30185049	83	38647											
ZNF436	80818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	23693623	23693623	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	23693623	G	A	23693623	2	1	647	1	0	0	0	0	0	0	0	1	17921	1219	43	2		2	ZNF436	1	23693623	Silent	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		23693623	225556998	1	38648											
KLF17	128209	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	44595405	44595405	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	44595405	C	G	44595405	2	3	647	1	0	0	0	0	0	0	0	1	8352	610	22	4		4	KLF17	1	44595405	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	20901782	44595405	204655216	2	38649											
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90179946	90179946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	90179946	A	C	90179946	3	2	647	1	0	0	0	0	1	0	0	0	9030	217	8	5	1823	5	LRRC8C	1	90179946	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	45584541	90179946	159070675	3	38650											
EVI5	7813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	93073196	93073196	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	93073196	T	A	93073196	3	1	647	1	0	0	0	0	1	0	0	0	5291	1841	64	5	580	5	EVI5	1	93073196	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	2893250	93073196	156177425	4	38651											
GPSM2	29899	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109439646	109439646	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	109439646	T	G	109439646	3	3	647	1	0	0	0	0	1	0	0	0	6742	1841	64	5	223	5	GPSM2	1	109439646	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	16366450	109439646	139810975	5	38652											
EDEM3	80267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	184723718	184723718	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	-	184723718	T	-	184723718	7	5	647	1	0	1	0	1	0	0	0	0	4915	1509	53	0	2815	0	EDEM3	1	184723718	Frame_Shift_Del	DEL	T	TCGA-HE-A5NH-01A-11D-A26P-10	75284072	184723718	64526903	6	38653											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186082053	186082053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	186082053	A	G	186082053	3	3	647	1	0	0	0	0	1	0	0	0	7227	72	3	3	11385	3	HMCN1	1	186082053	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	1358335	186082053	63168568	7	38654											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15519770	15519770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	15519770	G	T	15519770	3	4	647	1	0	0	0	0	1	0	0	0	10193	1281	45	4	3661	4	NBAS	2	15519770	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		15519770	227679603	8	38655											
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152320162	152320162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	152320162	A	T	152320162	3	4	647	1	0	0	0	0	1	0	0	0	13372	11	1	5	4242	5	RIF1	2	152320162	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	136800392	152320162	90879211	9	38656											
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160825863	160825863	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	160825863	C	G	160825863	3	3	647	1	0	0	0	0	1	0	0	0	12017	913	32	4	1779	4	PLA2R1	2	160825863	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	8505701	160825863	82373510	10	38657											
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219611762	219611762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	219611762	A	C	219611762	3	2	647	1	0	0	0	0	1	0	0	0	16741	247	9	5	2037	5	TTLL4	2	219611762	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	58785899	219611762	23587611	11	38658											
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219878079	219878079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	219878079	C	T	219878079	3	4	647	1	0	0	0	0	1	0	0	0	2745	681	24	2	1966	2	CCDC108	2	219878079	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	266317	219878079	23321294	12	38659											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220349151	220349151	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	220349151	C	T	220349151	2	4	647	1	0	0	0	0	0	0	0	1	15048	709	25	2		2	SPEG	2	220349151	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	471072	220349151	22850222	13	38660											
STK11IP	114790	hgsc.bcm.edu	37	2	220470428	220470428	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	220470428	G	T	220470428	2	4	647	1	0	0	0	0	0	0	0	1	15300	1306	46	4		4	STK11IP	2	220470428	Silent	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	121277	220470428	22728945	14	38661											
IL5RA	3568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	3139630	3139630	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	-	3139630	A	-	3139630	7	5	647	1	0	1	0	1	0	0	0	0	7707	117	5	0	679	0	IL5RA	3	3139630	Frame_Shift_Del	DEL	A	TCGA-HE-A5NH-01A-11D-A26P-10		3139630	194882800	15	38662											
IL17RC	84818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9971714	9971714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	9971714	T	C	9971714	3	2	647	1	0	0	0	0	1	0	0	0	7648	1551	54	3	1426	3	IL17RC	3	9971714	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	6832084	9971714	188050716	16	38663											
EOMES	8320	broad.mit.edu;bcgsc.ca	37	3	27760357	27760358	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	27760358	-	T	27760357	7	5	647	1	0	1	1	0	0	0	0	0	5149	449	16	0	886	0	EOMES	3	27760357	Frame_Shift_Ins	INS	-	TCGA-HE-A5NH-01A-11D-A26P-10	17788643	27760357	170262073	17	38664											
SCAP	22937	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47460314	47460314	+	Missense_Mutation	SNP	C	C	A	rs199794833	alternate_allele	TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	47460314	C	A	47460314	3	1	647	1	0	0	0	0	1	0	0	0	13890	536	19	4	1919	4	SCAP	3	47460314	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	19699957	47460314	150562116	18	38665											
RFT1	91869	ucsc.edu;bcgsc.ca	37	3	53126088	53126088	+	Splice_Site	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	53126088	T	A	53126088	5	1	647	1	0	0	0	0	0	0	1	0	13270	1594	55	5	172	5	RFT1	3	53126088	Splice_Site	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	5665774	53126088	144896342	19	38666											
ARL13B	200894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	93761993	93761993	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	-	93761993	T	-	93761993	7	5	647	1	0	1	0	1	0	0	0	0	929	1403	49	0	959	0	ARL13B	3	93761993	Frame_Shift_Del	DEL	T	TCGA-HE-A5NH-01A-11D-A26P-10	40635905	93761993	104260437	20	38667											
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137813760	137813760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	137813760	A	T	137813760	3	4	647	1	0	0	0	0	1	0	0	0	4866	159	6	5	1712	5	DZIP1L	3	137813760	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	44051767	137813760	60208670	21	38668											
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	36069579	36069579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	36069579	G	A	36069579	3	1	647	1	0	0	0	0	1	0	0	0	839	1144	40	1	53	1	ARAP2	4	36069579	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		36069579	155084697	22	38669											
GABRB1	2560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	47427723	47427723	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	47427723	C	G	47427723	2	3	647	1	0	0	0	0	0	0	0	1	6173	610	22	4		4	GABRB1	4	47427723	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	11358144	47427723	143726553	23	38670											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	7895903	7895903	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	-	7895903	C	-	7895903	7	5	647	1	0	1	0	1	0	0	0	0	9968	845	30	0	1741	0	MTRR	5	7895903	Frame_Shift_Del	DEL	C	TCGA-HE-A5NH-01A-11D-A26P-10		7895903	173019357	24	38671											
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	120021685	120021685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	120021685	C	A	120021685	3	1	647	1	0	0	0	0	1	0	0	0	12599	479	17	4	133	4	PRR16	5	120021685	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	112125782	120021685	60893575	25	38672											
CCNI2	645121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132088594	132088594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	132088594	G	A	132088594	3	1	647	1	0	0	0	0	1	0	0	0	2929	1377	48	2	1064	2	CCNI2	5	132088594	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	12066909	132088594	48826666	26	38673											
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137354741	137354741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	137354741	T	C	137354741	3	2	647	1	0	0	0	0	1	0	0	0	5457	1396	49	3	2841	3	FAM13B	5	137354741	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	5266147	137354741	43560519	27	38674											
MYLIP	29116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	16143330	16143330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	16143330	A	G	16143330	3	3	647	1	0	0	0	0	1	0	0	0	10062	101	4	3	558	3	MYLIP	6	16143330	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10		16143330	154971737	28	38675											
SLC17A1	6568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25811999	25811999	+	Splice_Site	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	25811999	C	T	25811999	5	4	647	1	0	0	0	0	0	0	1	0	14429	927	32	2	522	2	SLC17A1	6	25811999	Splice_Site	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	9668669	25811999	145303068	29	38676											
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53370243	53370243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	53370243	G	C	53370243	3	2	647	1	0	0	0	0	1	0	0	0	6302	971	34	4	591	4	GCLC	6	53370243	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	27558244	53370243	117744824	30	38677											
MET	4233	hgsc.bcm.edu	37	7	116411633	116411634	+	In_Frame_Ins	INS	-	-	TTGTCTCAATATCAACAGCACTGTTATTACTACTTGGGT	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	TTGTCTCAATATCAACAGCACTGTTATTACTACTTGGGT	116411634	-	TTGTCTCAATATCAACAGCACTGTTATTACTACTTGGGT	116411633	7	5	647	1	0	1	1	0	0	0	0	0	9492	1377	48	0	2912	0	MET	7	116411633	In_Frame_Ins	INS	-	TCGA-HE-A5NH-01A-11D-A26P-10		116411633	42727030	31	38678											
MET	4233	hgsc.bcm.edu;bcgsc.ca	37	7	116411675	116411675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	116411675	T	G	116411675	3	3	647	1	0	0	0	0	1	0	0	0	9492	1841	64	5	2954	5	MET	7	116411675	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	42	116411675	42726988	32	38679											
PLXNA4	91584	hgsc.bcm.edu;bcgsc.ca	37	7	131859582	131859583	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	AA	131859583	-	AA	131859582	7	5	647	1	0	1	1	0	0	0	0	0	12129	697	25	0	1760	0	PLXNA4	7	131859582	Frame_Shift_Ins	INS	-	TCGA-HE-A5NH-01A-11D-A26P-10	15447907	131859582	27279081	33	38680											
GBX1	2636	broad.mit.edu	37	7	150864527	150864529	+	In_Frame_Del	DEL	GCG	GCG	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	GCG	GCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	-	150864529	GCG	-	150864527	7	5	647	1	0	1	0	1	0	0	0	0	6287	1087	38	0	989	0	GBX1	7	150864527	In_Frame_Del	DEL	GCG	TCGA-HE-A5NH-01A-11D-A26P-10	19004945	150864527	8274136	34	38681											
MTUS1	57509	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	17579357	17579357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	17579357	T	A	17579357	3	1	647	1	0	0	0	0	1	0	0	0	9972	1838	64	5	1672	5	MTUS1	8	17579357	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10		17579357	128784665	35	38682											
LPL	4023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	19811710	19811710	+	Silent	SNP	C	C	T	rs118204076	alternate_allele	TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	19811710	C	T	19811710	2	4	647	1	0	0	0	0	0	0	0	1	8928	535	19	1		1	LPL	8	19811710	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	2232353	19811710	126552312	36	38683											
PPP2R2A	5520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	26211991	26211991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	26211991	T	C	26211991	3	2	647	1	0	0	0	0	1	0	0	0	12394	1435	50	3	243	3	PPP2R2A	8	26211991	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	6400281	26211991	120152031	37	38684											
ADAM9	8754	broad.mit.edu	37	8	38854664	38854670	+	Frame_Shift_Del	DEL	GGTGCGG	GGTGCGG	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	GGTGCGG	GGTGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	-	38854670	GGTGCGG	-	38854664	7	5	647	1	0	1	0	1	0	0	0	0	253	1116	39	0	84	0	ADAM9	8	38854664	Frame_Shift_Del	DEL	GGTGCGG	TCGA-HE-A5NH-01A-11D-A26P-10	12642673	38854664	107509358	38	38685											
ASPH	444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	62460750	62460750	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	62460750	C	T	62460750	2	4	647	1	0	0	0	0	0	0	0	1	1053	796	28	2		2	ASPH	8	62460750	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	23606086	62460750	83903272	39	38686											
TRAPPC9	83696	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	141301159	141301159	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	141301159	C	G	141301159	3	3	647	1	0	0	0	0	1	0	0	0	16477	855	30	4	1707	4	TRAPPC9	8	141301159	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	78840409	141301159	5062863	40	38687											
LRRC14	9684	broad.mit.edu	37	8	145745730	145745730	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	145745730	A	G	145745730	2	3	647	1	0	0	0	0	0	0	0	1	8975	204	8	3		3	LRRC14	8	145745730	Silent	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	4444571	145745730	618292	41	38688											
FOXD4L3	286380	hgsc.bcm.edu;broad.mit.edu	37	9	70919081	70919082	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	-	70919082	GG	-	70919081	7	5	647	1	0	1	0	1	0	0	0	0	6008	1116	39	0	1216	0	FOXD4L3	9	70919081	Frame_Shift_Del	DEL	GG	TCGA-HE-A5NH-01A-11D-A26P-10		70919081	70294350	42	38689											
ODF2	4957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131256869	131256869	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	131256869	T	C	131256869	2	2	647	1	0	0	0	0	0	0	0	1	10834	1567	55	3		3	ODF2	9	131256869	Silent	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	60337788	131256869	9956562	43	38690											
NUP214	8021	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134019825	134019825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	134019825	G	C	134019825	3	2	647	1	0	0	0	0	1	0	0	0	10769	1348	47	4	1499	4	NUP214	9	134019825	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	2762956	134019825	7193606	44	38691											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16941145	16941145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	16941145	G	C	16941145	3	2	647	1	0	0	0	0	1	0	0	0	4053	1280	45	4	2479	4	CUBN	10	16941145	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		16941145	118593602	45	38692											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64974605	64974605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	64974605	T	G	64974605	3	3	647	1	0	0	0	0	1	0	0	0	7957	1841	64	5	6376	5	JMJD1C	10	64974605	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	48033460	64974605	70560142	46	38693											
LDB1	8861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103871028	103871028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	103871028	A	G	103871028	3	3	647	1	0	0	0	0	1	0	0	0	8702	188	7	3	1113	3	LDB1	10	103871028	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	38896423	103871028	31663719	47	38694											
FAM53B	9679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	126311947	126311947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	126311947	G	A	126311947	3	1	647	1	0	0	0	0	1	0	0	0	5587	1294	45	2	139	2	FAM53B	10	126311947	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	22440919	126311947	9222800	48	38695											
ADAM12	8038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	127806755	127806755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	127806755	T	G	127806755	3	3	647	1	0	0	0	0	1	0	0	0	236	1783	62	5	2445	5	ADAM12	10	127806755	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	1494808	127806755	7727992	49	38696											
TRPM5	29850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2428360	2428360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	2428360	C	T	2428360	3	4	647	1	0	0	0	0	1	0	0	0	16601	652	23	1	410	1	TRPM5	11	2428360	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10		2428360	132578156	50	38697											
CALCB	797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	15096663	15096663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	15096663	T	A	15096663	3	1	647	1	0	0	0	0	1	0	0	0	2578	1551	54	5	149	5	CALCB	11	15096663	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	12668303	15096663	119909853	51	38698											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17150900	17150900	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	17150900	T	G	17150900	3	3	647	1	0	0	0	0	1	0	0	0	11916	1780	62	5	2798	5	PIK3C2A	11	17150900	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	2054237	17150900	117855616	52	38699											
OR5AR1	219493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	56432020	56432028	+	In_Frame_Del	DEL	CCCTTGATC	CCCTTGATC	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	CCCTTGATC	CCCTTGATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	-	56432028	CCCTTGATC	-	56432020	7	5	647	1	0	1	0	1	0	0	0	0	11152	855	30	0	861	0	OR5AR1	11	56432020	In_Frame_Del	DEL	CCCTTGATC	TCGA-HE-A5NH-01A-11D-A26P-10	39281120	56432020	78574496	53	38700											
PPFIA1	8500	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	70202285	70202285	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	70202285	A	T	70202285	3	4	647	1	0	0	0	0	1	0	0	0	12316	333	12	5	2577	5	PPFIA1	11	70202285	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	13770265	70202285	64804231	54	38701											
MOGAT2	80168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	75431106	75431106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	75431106	C	A	75431106	3	1	647	1	0	0	0	0	1	0	0	0	9702	768	27	4	167	4	MOGAT2	11	75431106	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	5228821	75431106	59575410	55	38702											
ARCN1	372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118464375	118464375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	118464375	T	G	118464375	3	3	647	1	0	0	0	0	1	0	0	0	842	1490	52	5	1233	5	ARCN1	11	118464375	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	43033269	118464375	16542141	56	38703											
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	121475939	121475939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	121475939	T	G	121475939	3	3	647	1	0	0	0	0	1	0	0	0	14947	1667	58	5	4903	5	SORL1	11	121475939	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	3011564	121475939	13530577	57	38704											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	133789844	133789844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	133789844	G	A	133789844	3	1	647	1	0	0	0	0	1	0	0	0	7613	1174	41	2	281	2	IGSF9B	11	133789844	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	12313905	133789844	1216672	58	38705											
ING4	51147	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	6760401	6760401	+	Splice_Site	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	6760401	C	T	6760401	5	4	647	1	0	0	0	0	0	0	1	0	7745	695	24	2	43	2	ING4	12	6760401	Splice_Site	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10		6760401	127091494	59	38706											
BHLHE41	79365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26276658	26276658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	26276658	T	C	26276658	3	2	647	1	0	0	0	0	1	0	0	0	1424	1551	54	3	1205	3	BHLHE41	12	26276658	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	19516257	26276658	107575237	60	38707											
ERGIC2	51290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	29502995	29502995	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	29502995	A	T	29502995	2	4	647	1	0	0	0	0	0	0	0	1	5226	242	9	5		5	ERGIC2	12	29502995	Silent	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	3226337	29502995	104348900	61	38708											
PPP1CC	5501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	111168372	111168372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	111168372	C	T	111168372	3	4	647	1	0	0	0	0	1	0	0	0	12361	478	17	2	611	2	PPP1CC	12	111168372	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	81665377	111168372	22683523	62	38709											
SSTR1	6751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38678806	38678806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	38678806	T	C	38678806	3	2	647	1	0	0	0	0	1	0	0	0	15209	1696	59	3	214	3	SSTR1	14	38678806	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10		38678806	68670734	63	38710											
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64988346	64988346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	64988346	C	G	64988346	3	3	647	1	0	0	0	0	1	0	0	0	17534	912	32	4	126	4	ZBTB1	14	64988346	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	26309540	64988346	42361194	64	38711											
WDR20	91833	hgsc.bcm.edu;bcgsc.ca	37	14	102674963	102674964	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	102674964	-	A	102674963	7	5	647	1	0	1	1	0	0	0	0	0	17292	1741	61	0	483	0	WDR20	14	102674963	Frame_Shift_Ins	INS	-	TCGA-HE-A5NH-01A-11D-A26P-10	37686617	102674963	4674577	65	38712											
TJP1	7082	ucsc.edu;bcgsc.ca	37	15	30010892	30010892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	30010892	C	A	30010892	3	1	647	1	0	0	0	0	1	0	0	0	15941	797	28	4	1824	4	TJP1	15	30010892	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10		30010892	72520500	66	38713											
C15orf52	388115	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40631768	40631768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	40631768	G	A	40631768	3	1	647	1	0	0	0	0	1	0	0	0	1802	1377	48	2	1332	2	C15orf52	15	40631768	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	10620876	40631768	61899624	67	38714											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54557623	54557623	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	54557623	T	A	54557623	2	1	647	1	0	0	0	0	0	0	0	1	16998	1799	63	5		5	UNC13C	15	54557623	Silent	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	13925855	54557623	47973769	68	38715											
SNX1	6642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64424017	64424017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	64424017	G	C	64424017	3	2	647	1	0	0	0	0	1	0	0	0	14893	1175	41	4	1189	4	SNX1	15	64424017	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	9866394	64424017	38107375	69	38716											
ANP32A	8125	ucsc.edu	37	15	69072440	69072440	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	69072440	C	A	69072440	4	1	647	1	0	0	0	0	0	1	0	0	705	835	29	4	23	4	ANP32A	15	69072440	Nonsense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	4648423	69072440	33458952	70	38717											
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85411510	85411510	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	85411510	G	C	85411510	3	2	647	1	0	0	0	0	1	0	0	0	546	1165	41	4	5601	4	ALPK3	15	85411510	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	16339070	85411510	17119882	71	38718											
LOC100132247	0	broad.mit.edu;bcgsc.ca	37	16	22545906	22545906	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	22545906	C	T	22545906	2	4	647	1	0	0	0	0	0	0	0	1	8875	639	23	1		1	LOC100132247	16	22545906	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10		22545906	67808847	72	38719											
ZNF668	79759	broad.mit.edu;bcgsc.ca	37	16	31072415	31072415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	31072415	C	G	31072415	3	3	647	1	0	0	0	0	1	0	0	0	18087	690	24	4	29	4	ZNF668	16	31072415	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	8526509	31072415	59282338	73	38720											
CES3	23491	broad.mit.edu	37	16	66997181	66997181	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	66997181	T	G	66997181	3	3	647	1	0	0	0	0	1	0	0	0	3273	1580	55	5	188	5	CES3	16	66997181	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	35924766	66997181	23357572	74	38721											
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81193369	81193369	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	81193369	C	G	81193369	3	3	647	1	0	0	0	0	1	0	0	0	11972	507	18	4	3708	4	PKD1L2	16	81193369	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	14196188	81193369	9161384	75	38722											
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27959441	27959441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	27959441	T	A	27959441	3	1	647	1	0	0	0	0	1	0	0	0	15197	1609	56	5	1585	5	SSH2	17	27959441	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10		27959441	53235769	76	38723											
TGIF1	7050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	3452341	3452341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	3452341	G	C	3452341	3	2	647	1	0	0	0	0	1	0	0	0	15837	1232	43	4	448	4	TGIF1	18	3452341	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		3452341	74624907	77	38724											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8378412	8378412	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	8378412	G	T	8378412	2	4	647	1	0	0	0	0	0	0	0	1	12819	1246	43	4		4	PTPRM	18	8378412	Silent	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	4926071	8378412	69698836	78	38725											
KIAA1468	57614	bcgsc.ca	37	18	59954615	59954615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	59954615	G	T	59954615	3	4	647	1	0	0	0	0	1	0	0	0	8243	1339	47	4	3387	4	KIAA1468	18	59954615	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	51576203	59954615	18122633	79	38726											
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5832530	5832530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	5832530	G	T	5832530	3	4	647	1	0	0	0	0	1	0	0	0	6115	933	33	4	1034	4	FUT6	19	5832530	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		5832530	53296453	80	38727											
CYP4F8	11283	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15739650	15739650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	15739650	C	G	15739650	3	3	647	1	0	0	0	0	1	0	0	0	4193	623	22	4	1435	4	CYP4F8	19	15739650	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	9907120	15739650	43389333	81	38728											
PSG4	5672	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43708130	43708130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	43708130	G	A	43708130	3	1	647	1	0	0	0	0	1	0	0	0	12667	1145	40	1	941	1	PSG4	19	43708130	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	27968480	43708130	15420853	82	38729											
CCDC9	26093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47767895	47767895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	47767895	G	T	47767895	3	4	647	1	0	0	0	0	1	0	0	0	2869	933	33	4	516	4	CCDC9	19	47767895	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	4059765	47767895	11361088	83	38730											
ZNF600	162966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53269420	53269420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	53269420	T	A	53269420	3	1	647	1	0	0	0	0	1	0	0	0	18042	1551	54	5	583	5	ZNF600	19	53269420	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	5501525	53269420	5859563	84	38731											
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53959526	53959526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	53959526	T	G	53959526	3	3	647	1	0	0	0	0	1	0	0	0	18148	1841	64	5	1776	5	ZNF761	19	53959526	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	690106	53959526	5169457	85	38732											
CRNKL1	51340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	20026023	20026023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	20026023	A	T	20026023	3	4	647	1	0	0	0	0	1	0	0	0	3893	101	4	5	1369	5	CRNKL1	20	20026023	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10		20026023	42999497	86	38733											
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	36841970	36841970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	T	36841970	C	T	36841970	3	4	647	1	0	0	0	0	1	0	0	0	8264	652	23	1	529	1	KIAA1755	20	36841970	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	16815947	36841970	26183550	87	38734											
CABLES2	81928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60967982	60967982	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	G	60967982	C	G	60967982	2	3	647	1	0	0	0	0	0	0	0	1	2532	523	19	4		4	CABLES2	20	60967982	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	24126012	60967982	2057538	88	38735											
DGCR8	54487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	20077782	20077782	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	20077782	G	C	20077782	5	2	647	1	0	0	0	0	0	0	1	0	4466	1275	44	4	1321	4	DGCR8	22	20077782	Splice_Site	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		20077782	31226784	89	38736											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46931730	46931730	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	A	46931730	G	A	46931730	2	1	647	1	0	0	0	0	0	0	0	1	3223	1372	48	2		2	CELSR1	22	46931730	Silent	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	26853948	46931730	4372836	90	38737											
KDM5C	8242	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53245084	53245084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	53245084	T	C	53245084	3	2	647	1	0	0	0	0	1	0	0	0	8142	1725	60	3	4004	3	KDM5C	23	53245084	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10		53245084	102025476	91	38738											
ATP11C	286410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	138880882	138880882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C	138880882	A	C	138880882	3	2	647	1	0	0	0	0	1	0	0	0	1121	304	11	5	2809	5	ATP11C	23	138880882	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	85635798	138880882	16389678	92	38739											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8422784	8422784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	8422784	T	C	8422784	3	2	648	1	0	0	0	0	1	0	0	0	13244	1580	55	3	2871	3	RERE	1	8422784	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10		8422784	240827837	1	38740											
MFN2	9927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	12052666	12052667	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	12052667	AC	-	12052666	7	5	648	1	0	1	0	1	0	0	0	0	9531	275	10	0	236	0	MFN2	1	12052666	Frame_Shift_Del	DEL	AC	TCGA-HE-A5NI-01A-11D-A26P-10	3629882	12052666	237197955	2	38741											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16260463	16260463	+	Silent	SNP	T	T	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	16260463	T	G	16260463	2	3	648	1	0	0	0	0	0	0	0	1	15050	1799	63	5		5	SPEN	1	16260463	Silent	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	4207797	16260463	232990158	3	38742											
AKR7A3	22977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19611546	19611546	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	19611546	A	G	19611546	2	3	648	1	0	0	0	0	0	0	0	1	476	127	5	3		3	AKR7A3	1	19611546	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	3351083	19611546	229639075	4	38743											
RAP1GAP	5909	bcgsc.ca	37	1	21952821	21952821	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	21952821	G	T	21952821	2	4	648	1	0	0	0	0	0	0	0	1	13050	987	35	4		4	RAP1GAP	1	21952821	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2341275	21952821	227297800	5	38744											
ZMYM1	79830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	35569920	35569920	+	Silent	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	35569920	G	C	35569920	2	2	648	1	0	0	0	0	0	0	0	1	17711	1277	45	4		4	ZMYM1	1	35569920	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	13617099	35569920	213680701	6	38745											
EPS15	2060	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	51946986	51946986	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	51946986	A	C	51946986	3	2	648	1	0	0	0	0	1	0	0	0	5194	57	2	5	2850	5	EPS15	1	51946986	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	16377066	51946986	197303635	7	38746											
ATG4C	84938	broad.mit.edu;bcgsc.ca	37	1	63284805	63284806	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	63284806	-	A	63284805	7	5	648	1	0	1	1	0	0	0	0	0	1098	478	17	0	538	0	ATG4C	1	63284805	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10	11337819	63284805	185965816	8	38747											
FAM46C	54855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	118165851	118165851	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	118165851	C	G	118165851	3	3	648	1	0	0	0	0	1	0	0	0	5574	739	26	4	363	4	FAM46C	1	118165851	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	54881046	118165851	131084770	9	38748											
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203819761	203819761	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	203819761	C	T	203819761	2	4	648	1	0	0	0	0	0	0	0	1	17572	813	29	2		2	ZC3H11A	1	203819761	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	85653910	203819761	45430860	10	38749											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208213052	208213052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	208213052	C	T	208213052	3	4	648	1	0	0	0	0	1	0	0	0	12127	623	22	2	1306	2	PLXNA2	1	208213052	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	4393291	208213052	41037569	11	38750											
CAPN2	824	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	223900487	223900487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	223900487	C	A	223900487	3	1	648	1	0	0	0	0	1	0	0	0	2629	623	22	4	154	4	CAPN2	1	223900487	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	15687435	223900487	25350134	12	38751											
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25972919	25972919	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	25972919	C	T	25972919	2	4	648	1	0	0	0	0	0	0	0	1	1067	912	32	2		2	ASXL2	2	25972919	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10		25972919	217226454	13	38752											
HADHA	3030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26427053	26427053	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	26427053	A	C	26427053	3	2	648	1	0	0	0	0	1	0	0	0	6950	242	9	5	1229	5	HADHA	2	26427053	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	454134	26427053	216772320	14	38753											
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74320721	74320721	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	74320721	G	T	74320721	2	4	648	1	0	0	0	0	0	0	0	1	15783	1219	43	4		4	TET3	2	74320721	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	47893668	74320721	168878652	15	38754											
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102493592	102493592	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	102493592	C	G	102493592	2	3	648	1	0	0	0	0	0	0	0	1	9269	900	32	4		4	MAP4K4	2	102493592	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	28172871	102493592	140705781	16	38755											
NPHP1	4867	broad.mit.edu	37	2	110936067	110936067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	110936067	G	A	110936067	3	1	648	1	0	0	0	0	1	0	0	0	10586	942	33	2	2007	2	NPHP1	2	110936067	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	8442475	110936067	132263306	17	38756											
ZC3H6	376940	broad.mit.edu;bcgsc.ca	37	2	113067649	113067649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	113067649	G	A	113067649	3	1	648	1	0	0	0	0	1	0	0	0	17583	1000	35	2	538	2	ZC3H6	2	113067649	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2131582	113067649	130131724	18	38757											
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	130899739	130899739	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	130899739	T	G	130899739	3	3	648	1	0	0	0	0	1	0	0	0	2850	1609	56	5	655	5	CCDC74B	2	130899739	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	17832090	130899739	112299634	19	38758											
SF3B1	23451	broad.mit.edu;bcgsc.ca	37	2	198285209	198285209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	198285209	T	G	198285209	3	3	648	1	0	0	0	0	1	0	0	0	14162	1821	63	5	3668	5	SF3B1	2	198285209	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	67385470	198285209	44914164	20	38759											
C2orf69	205327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	200790075	200790075	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	200790075	T	A	200790075	3	1	648	1	0	0	0	0	1	0	0	0	2190	1461	51	5	630	5	C2orf69	2	200790075	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	2504866	200790075	42409298	21	38760											
CLK1	1195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	201721517	201721517	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	201721517	G	-	201721517	7	5	648	1	0	1	0	1	0	0	0	0	3538	987	35	0	529	0	CLK1	2	201721517	Frame_Shift_Del	DEL	G	TCGA-HE-A5NI-01A-11D-A26P-10	931442	201721517	41477856	22	38761											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216271073	216271073	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	216271073	C	T	216271073	2	4	648	1	0	0	0	0	0	0	0	1	5969	854	30	2		2	FN1	2	216271073	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	14549556	216271073	26928300	23	38762											
TRNT1	51095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	3182301	3182309	+	In_Frame_Del	DEL	CAGAGATCT	CAGAGATCT	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	CAGAGATCT	CAGAGATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	3182309	CAGAGATCT	-	3182301	7	5	648	1	0	1	0	1	0	0	0	0	16585	697	25	0	460	0	TRNT1	3	3182301	In_Frame_Del	DEL	CAGAGATCT	TCGA-HE-A5NI-01A-11D-A26P-10		3182301	194840129	24	38763											
FBLN2	2199	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13671374	13671374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	13671374	A	G	13671374	3	3	648	1	0	0	0	0	1	0	0	0	5706	43	2	3	1637	3	FBLN2	3	13671374	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	10489073	13671374	184351056	25	38764											
TGFBR2	7048	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30713426	30713426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	30713426	G	A	30713426	3	1	648	1	0	0	0	0	1	0	0	0	15834	1232	43	2	844	2	TGFBR2	3	30713426	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	17042052	30713426	167309004	26	38765											
OSBPL10	114884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	31705657	31705657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	31705657	G	A	31705657	3	1	648	1	0	0	0	0	1	0	0	0	11282	1086	38	1	138	1	OSBPL10	3	31705657	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	992231	31705657	166316773	27	38766											
TRIM71	131405	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	32915387	32915387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	32915387	C	A	32915387	3	1	648	1	0	0	0	0	1	0	0	0	16556	796	28	4	936	4	TRIM71	3	32915387	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	1209730	32915387	165107043	28	38767											
PRKCD	5580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	53220041	53220041	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	53220041	A	T	53220041	4	4	648	1	0	0	0	0	0	1	0	0	12519	247	9	5	1122	5	PRKCD	3	53220041	Nonsense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	20304654	53220041	144802389	29	38768											
FRMD4B	23150	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69247894	69247894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	69247894	T	C	69247894	3	2	648	1	0	0	0	0	1	0	0	0	6059	1406	49	3	2244	3	FRMD4B	3	69247894	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	16027853	69247894	128774536	30	38769											
CEP97	79598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101450739	101450739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	101450739	T	C	101450739	3	2	648	1	0	0	0	0	1	0	0	0	3265	1522	53	3	521	3	CEP97	3	101450739	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	32202845	101450739	96571691	31	38770											
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124536482	124536482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	124536482	T	A	124536482	3	1	648	1	0	0	0	0	1	0	0	0	7905	1406	49	5	1317	5	ITGB5	3	124536482	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	23085743	124536482	73485948	32	38771											
IFT122	55764	hgsc.bcm.edu;bcgsc.ca	37	3	129200472	129200472	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	129200472	G	C	129200472	3	2	648	1	0	0	0	0	1	0	0	0	7562	1203	42	4	1799	4	IFT122	3	129200472	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	4663990	129200472	68821958	33	38772											
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137790541	137790541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	137790541	G	A	137790541	3	1	648	1	0	0	0	0	1	0	0	0	4866	1087	38	1	773	1	DZIP1L	3	137790541	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	8590069	137790541	60231889	34	38773											
KNG1	3827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186445075	186445075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	186445075	A	C	186445075	3	2	648	1	0	0	0	0	1	0	0	0	8434	101	4	5	632	5	KNG1	3	186445075	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	48654534	186445075	11577355	35	38774											
RNF168	165918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196214285	196214286	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	196214286	-	T	196214285	7	5	648	1	0	1	1	0	0	0	0	0	13472	796	28	0	1188	0	RNF168	3	196214285	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10	9769210	196214285	1808145	36	38775											
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153690653	153690653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	153690653	G	C	153690653	3	2	648	1	0	0	0	0	1	0	0	0	15910	1000	35	4	38	4	TIGD4	4	153690653	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		153690653	37463623	37	38776											
SEMA5A	9037	broad.mit.edu	37	5	9063125	9063125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	9063125	G	C	9063125	3	2	648	1	0	0	0	0	1	0	0	0	14050	1116	39	4	856	4	SEMA5A	5	9063125	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		9063125	171852135	38	38777											
CARD6	84674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	40852818	40852818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	40852818	T	C	40852818	3	2	648	1	0	0	0	0	1	0	0	0	2652	1406	49	3	1394	3	CARD6	5	40852818	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	31789693	40852818	140062442	39	38778											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	80037368	80037368	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	80037368	G	C	80037368	5	2	648	1	0	0	0	0	0	0	1	0	9878	1275	44	4	1696	4	MSH3	5	80037368	Splice_Site	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	39184550	80037368	100877892	40	38779											
PAM	5066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	102203042	102203042	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	102203042	T	-	102203042	7	5	648	1	0	1	0	1	0	0	0	0	11419	1493	52	0	161	0	PAM	5	102203042	Frame_Shift_Del	DEL	T	TCGA-HE-A5NI-01A-11D-A26P-10	22165674	102203042	78712218	41	38780	493	3									
PAM	5066	hgsc.bcm.edu	37	5	102203043	102203044	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	102203044	TG	-	102203043	7	5	648	1	0	1	0	1	0	0	0	0	11419	1800	63	0	162	0	PAM	5	102203043	Frame_Shift_Del	DEL	TG	TCGA-HE-A5NI-01A-11D-A26P-10	1	102203043	78712217	42	38781	493	3									
PAM	5066	hgsc.bcm.edu;bcgsc.ca	37	5	102203044	102203044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	102203044	G	A	102203044	3	1	648	1	0	0	0	0	1	0	0	0	11419	1290	45	2	163	2	PAM	5	102203044	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	1	102203044	78712216	43	38782	493	3									
ARHGAP26	23092	broad.mit.edu	37	5	142281511	142281511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	142281511	C	A	142281511	3	1	648	1	0	0	0	0	1	0	0	0	875	854	30	4	635	4	ARHGAP26	5	142281511	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	40078467	142281511	38633749	44	38783											
SYCP2L	221711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	10931696	10931696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	10931696	A	G	10931696	3	3	648	1	0	0	0	0	1	0	0	0	15445	420	15	3	1735	3	SYCP2L	6	10931696	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10		10931696	160183371	45	38784											
GPLD1	2822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24450018	24450018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	24450018	T	C	24450018	3	2	648	1	0	0	0	0	1	0	0	0	6621	1855	64	3	1121	3	GPLD1	6	24450018	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	13518322	24450018	146665049	46	38785											
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32169043	32169043	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	32169043	C	T	32169043	2	4	648	1	0	0	0	0	0	0	0	1	10558	854	30	2		2	NOTCH4	6	32169043	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	7719025	32169043	138946024	47	38786											
C6orf106	64771	hgsc.bcm.edu;broad.mit.edu	37	6	34664262	34664262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	34664262	T	C	34664262	3	2	648	1	0	0	0	0	1	0	0	0	2321	1493	52	3	797	3	C6orf106	6	34664262	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	2495219	34664262	136450805	48	38787											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56501422	56501422	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	56501422	C	T	56501422	4	4	648	1	0	0	0	0	0	1	0	0	4785	595	21	2	19077	2	DST	6	56501422	Nonsense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	21837160	56501422	114613645	49	38788											
KIAA1009	22832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84872967	84872967	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	84872967	T	G	84872967	3	3	648	1	0	0	0	0	1	0	0	0	8210	1783	62	5	1839	5	KIAA1009	6	84872967	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	28371545	84872967	86242100	50	38789											
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	87943085	87943085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	87943085	T	A	87943085	3	1	648	1	0	0	0	0	1	0	0	0	17838	1464	51	5	599	5	ZNF292	6	87943085	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	3070118	87943085	83171982	51	38790											
PNRC1	10957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	89793801	89793801	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	89793801	T	C	89793801	2	2	648	1	0	0	0	0	0	0	0	1	12181	1509	53	3		3	PNRC1	6	89793801	Silent	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	1850716	89793801	81321266	52	38791											
MCM9	254394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	119245294	119245294	+	Splice_Site	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	119245294	T	C	119245294	5	2	648	1	0	0	0	0	0	0	1	0	9401	1594	55	3	892	3	MCM9	6	119245294	Splice_Site	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	29451493	119245294	51869773	53	38792											
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	167435950	167435950	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	167435950	C	A	167435950	2	1	648	1	0	0	0	0	0	0	0	1	5871	581	21	4		4	FGFR1OP	6	167435950	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	48190656	167435950	3679117	54	38793											
WBSCR27	155368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73249148	73249148	+	Silent	SNP	A	A	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	73249148	A	C	73249148	2	2	648	1	0	0	0	0	0	0	0	1	17278	291	11	5		5	WBSCR27	7	73249148	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10		73249148	85889515	55	38794											
HTR5A	3361	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	154862732	154862732	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	154862732	G	T	154862732	2	4	648	1	0	0	0	0	0	0	0	1	7457	1306	46	4		4	HTR5A	7	154862732	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	81613584	154862732	4275931	56	38795											
TRIM35	23087	bcgsc.ca	37	8	27145422	27145422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	27145422	C	T	27145422	3	4	648	1	0	0	0	0	1	0	0	0	16521	768	27	1	358	1	TRIM35	8	27145422	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10		27145422	119218600	57	38796											
GDAP1	54332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	75274164	75274164	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	75274164	A	-	75274164	7	5	648	1	0	1	0	1	0	0	0	0	6314	246	9	0	544	0	GDAP1	8	75274164	Frame_Shift_Del	DEL	A	TCGA-HE-A5NI-01A-11D-A26P-10	48128742	75274164	71089858	58	38797											
SQLE	6713	ucsc.edu;bcgsc.ca	37	8	126033029	126033029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	126033029	C	T	126033029	3	4	648	1	0	0	0	0	1	0	0	0	15140	855	30	2	1385	2	SQLE	8	126033029	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	50758865	126033029	20330993	59	38798											
ACER2	340485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19435060	19435060	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	19435060	C	T	19435060	2	4	648	1	0	0	0	0	0	0	0	1	139	564	20	2		2	ACER2	9	19435060	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10		19435060	121778371	60	38799											
FAM22F	54754	bcgsc.ca	37	9	97081337	97081337	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	97081337	C	A	97081337	4	1	648	1	0	0	0	0	0	1	0	0	5549	632	22	4	593	4	FAM22F	9	97081337	Nonsense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	77646277	97081337	44132094	61	38800											
FAM22G	441457	bcgsc.ca	37	9	99700841	99700841	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	99700841	G	T	99700841	4	4	648	1	0	0	0	0	0	1	0	0	5550	1233	43	4	1662	4	FAM22G	9	99700841	Nonsense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2619504	99700841	41512590	62	38801											
PTGR1	22949	broad.mit.edu;bcgsc.ca	37	9	114332439	114332439	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	114332439	C	-	114332439	7	5	648	1	0	1	0	1	0	0	0	0	12764	478	17	0	217	0	PTGR1	9	114332439	Frame_Shift_Del	DEL	C	TCGA-HE-A5NI-01A-11D-A26P-10	14631598	114332439	26880992	63	38802	494	2									
PTGR1	22949	bcgsc.ca	37	9	114332440	114332440	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	114332440	A	G	114332440	2	3	648	1	0	0	0	0	0	0	0	1	12764	127	5	3		3	PTGR1	9	114332440	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	1	114332440	26880991	64	38803	494	2									
GPR21	2844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125797664	125797664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	125797664	G	T	125797664	3	4	648	1	0	0	0	0	1	0	0	0	6688	1368	48	4	821	4	GPR21	9	125797664	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	11465224	125797664	15415767	65	38804											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131386741	131386741	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	131386741	G	A	131386741	2	1	648	1	0	0	0	0	0	0	0	1	15129	991	35	2		2	SPTAN1	9	131386741	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	5589077	131386741	9826690	66	38805											
DNAJC1	64215	ucsc.edu	37	10	22208842	22208842	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	22208842	C	G	22208842	3	3	648	1	0	0	0	0	1	0	0	0	4630	913	32	4	1142	4	DNAJC1	10	22208842	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10		22208842	113325905	67	38806											
KIF5B	3799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32320043	32320043	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	32320043	A	G	32320043	2	3	648	1	0	0	0	0	0	0	0	1	8313	407	15	3		3	KIF5B	10	32320043	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	10111201	32320043	103214704	68	38807											
CYP26A1	1592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	94834101	94834101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	94834101	G	A	94834101	3	1	648	1	0	0	0	0	1	0	0	0	4157	1116	39	1	232	1	CYP26A1	10	94834101	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	62514058	94834101	40700646	69	38808											
LGI1	9211	hgsc.bcm.edu	37	10	95549895	95549895	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	95549895	T	C	95549895	2	2	648	1	0	0	0	0	0	0	0	1	8758	1403	49	3		3	LGI1	10	95549895	Silent	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	715794	95549895	39984852	70	38809											
SEMA4G	57715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102738660	102738660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	102738660	G	A	102738660	3	1	648	1	0	0	0	0	1	0	0	0	14049	1261	44	2	724	2	SEMA4G	10	102738660	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	7188765	102738660	32796087	71	38810											
PPRC1	23082	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103899235	103899235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	103899235	G	A	103899235	3	1	648	1	0	0	0	0	1	0	0	0	12420	1203	42	2	988	2	PPRC1	10	103899235	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	1160575	103899235	31635512	72	38811											
DMBT1	1755	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124339398	124339398	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	124339398	C	G	124339398	3	3	648	1	0	0	0	0	1	0	0	0	4579	535	19	4	1022	4	DMBT1	10	124339398	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	20440163	124339398	11195349	73	38812											
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73748552	73748561	+	Frame_Shift_Del	DEL	AGGTTACTGG	AGGTTACTGG	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	AGGTTACTGG	AGGTTACTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	73748561	AGGTTACTGG	-	73748552	7	5	648	1	0	1	0	1	0	0	0	0	2156	188	7	0	47	0	C2CD3	11	73748552	Frame_Shift_Del	DEL	AGGTTACTGG	TCGA-HE-A5NI-01A-11D-A26P-10		73748552	61257964	74	38813											
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	89896525	89896525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	89896525	G	A	89896525	3	1	648	1	0	0	0	0	1	0	0	0	10135	971	34	2	1161	2	NAALAD2	11	89896525	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	16147973	89896525	45109991	75	38814											
GPRC5D	55507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13102558	13102558	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	13102558	A	T	13102558	3	4	648	1	0	0	0	0	1	0	0	0	6734	188	7	5	286	5	GPRC5D	12	13102558	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10		13102558	120749337	76	38815											
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	41966603	41966603	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	41966603	A	-	41966603	7	5	648	1	0	1	0	1	0	0	0	0	11717	243	9	0	2133	0	PDZRN4	12	41966603	Frame_Shift_Del	DEL	A	TCGA-HE-A5NI-01A-11D-A26P-10	28864045	41966603	91885292	77	38816											
GALNT6	11226	broad.mit.edu;bcgsc.ca	37	12	51751976	51751982	+	Frame_Shift_Del	DEL	ACCAGGA	ACCAGGA	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	ACCAGGA	ACCAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	51751982	ACCAGGA	-	51751976	7	5	648	1	0	1	0	1	0	0	0	0	6224	391	14	0	446	0	GALNT6	12	51751976	Frame_Shift_Del	DEL	ACCAGGA	TCGA-HE-A5NI-01A-11D-A26P-10	9785373	51751976	82099919	78	38817											
SP7	121340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53722359	53722359	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	53722359	C	T	53722359	2	4	648	1	0	0	0	0	0	0	0	1	14982	842	30	2		2	SP7	12	53722359	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	1970383	53722359	80129536	79	38818											
DNAJC14	85406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56216194	56216194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	56216194	A	G	56216194	3	3	648	1	0	0	0	0	1	0	0	0	4635	101	4	3	255	3	DNAJC14	12	56216194	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	2493835	56216194	77635701	80	38819											
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	63991615	63991615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	63991615	G	A	63991615	3	1	648	1	0	0	0	0	1	0	0	0	4743	1174	41	2	877	2	DPY19L2	12	63991615	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	7775421	63991615	69860280	81	38820											
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	98925573	98925573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	98925573	G	C	98925573	3	2	648	1	0	0	0	0	1	0	0	0	16249	933	33	4	532	4	TMPO	12	98925573	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	34933958	98925573	34926322	82	38821											
POLR3B	55703	broad.mit.edu	37	12	106890644	106890644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	106890644	C	T	106890644	3	4	648	1	0	0	0	0	1	0	0	0	12236	884	31	1	3030	1	POLR3B	12	106890644	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	7965071	106890644	26961251	83	38822											
RNF34	80196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121855373	121855374	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	121855374	AG	-	121855373	7	5	648	1	0	1	0	1	0	0	0	0	13502	412	15	0	315	0	RNF34	12	121855373	Frame_Shift_Del	DEL	AG	TCGA-HE-A5NI-01A-11D-A26P-10	14964729	121855373	11996522	84	38823											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	23906370	23906371	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	23906371	-	A	23906370	7	5	648	1	0	1	1	0	0	0	0	0	13817	942	33	0	2098	0	SACS	13	23906370	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10		23906370	91263508	85	38824											
IPO4	79711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24654679	24654679	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	24654679	A	T	24654679	3	4	648	1	0	0	0	0	1	0	0	0	7802	304	11	5	2053	5	IPO4	14	24654679	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10		24654679	82694861	86	38825											
BRMS1L	84312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	36300676	36300676	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	36300676	T	-	36300676	7	5	648	1	0	1	0	1	0	0	0	0	1519	1609	56	0	209	0	BRMS1L	14	36300676	Frame_Shift_Del	DEL	T	TCGA-HE-A5NI-01A-11D-A26P-10	11645997	36300676	71048864	87	38826											
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51223359	51223359	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	51223359	C	G	51223359	3	3	648	1	0	0	0	0	1	0	0	0	10424	796	28	4	2216	4	NIN	14	51223359	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	14922683	51223359	56126181	88	38827											
CHGA	1113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	93397675	93397675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	93397675	A	G	93397675	3	3	648	1	0	0	0	0	1	0	0	0	3340	159	6	3	458	3	CHGA	14	93397675	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	42174316	93397675	13951865	89	38828											
GCNT3	9245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	59911000	59911000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	59911000	T	C	59911000	3	2	648	1	0	0	0	0	1	0	0	0	6309	1406	49	3	565	3	GCNT3	15	59911000	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10		59911000	42620392	90	38829											
DENND4A	10260	hgsc.bcm.edu;bcgsc.ca	37	15	65956990	65956991	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	65956991	-	T	65956990	7	5	648	1	0	1	1	0	0	0	0	0	4435	388	14	0	305	0	DENND4A	15	65956990	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10	6045990	65956990	36574402	91	38830											
UACA	55075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	70991969	70991969	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	70991969	G	A	70991969	4	1	648	1	0	0	0	0	0	1	0	0	16836	1124	39	1	4213	1	UACA	15	70991969	Nonsense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	5034979	70991969	31539423	92	38831											
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	92973323	92973323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	92973323	T	C	92973323	3	2	648	1	0	0	0	0	1	0	0	0	15244	1764	61	3	149	3	ST8SIA2	15	92973323	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	21981354	92973323	9558069	93	38832											
ASB7	140460	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101152488	101152488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	101152488	G	A	101152488	3	1	648	1	0	0	0	0	1	0	0	0	1028	1203	42	2	69	2	ASB7	15	101152488	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	8179165	101152488	1378904	94	38833											
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101865152	101865152	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	101865152	A	G	101865152	2	3	648	1	0	0	0	0	0	0	0	1	11611	175	7	3		3	PCSK6	15	101865152	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	712664	101865152	666240	95	38834											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30733555	30733555	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	30733555	G	C	30733555	3	2	648	1	0	0	0	0	1	0	0	0	15147	1281	45	4	3732	4	SRCAP	16	30733555	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		30733555	59621198	96	38835											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31371302	31371302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	31371302	G	A	31371302	3	1	648	1	0	0	0	0	1	0	0	0	7896	1087	38	1	649	1	ITGAX	16	31371302	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	637747	31371302	58983451	97	38836											
ZNF319	57567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58031774	58031774	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	58031774	G	A	58031774	2	1	648	1	0	0	0	0	0	0	0	1	17849	1049	37	1		1	ZNF319	16	58031774	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	26660472	58031774	32322979	98	38837											
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71772895	71772895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	71772895	T	A	71772895	3	1	648	1	0	0	0	0	1	0	0	0	732	1580	55	5	262	5	AP1G1	16	71772895	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	13741121	71772895	18581858	99	38838											
PRPF8	10594	broad.mit.edu	37	17	1585300	1585301	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	1585301	-	T	1585300	7	5	648	1	0	1	1	0	0	0	0	0	12585	913	32	0	6696	0	PRPF8	17	1585300	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10		1585300	79609910	100	38839											
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35615281	35615281	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	35615281	A	T	35615281	2	4	648	1	0	0	0	0	0	0	0	1	106	242	9	5		5	ACACA	17	35615281	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	34029981	35615281	45579929	101	38840											
KRT23	25984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39092459	39092459	+	Splice_Site	SNP	C	C	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	39092459	C	G	39092459	5	3	648	1	0	0	0	0	0	0	1	0	8467	521	18	4	903	4	KRT23	17	39092459	Splice_Site	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	3477178	39092459	42102751	102	38841											
PSMD12	5718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65362549	65362549	+	Silent	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	65362549	G	C	65362549	2	2	648	1	0	0	0	0	0	0	0	1	12705	1103	39	4		4	PSMD12	17	65362549	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	26270090	65362549	15832661	103	38842											
TRIM47	91107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73872839	73872839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	73872839	G	A	73872839	3	1	648	1	0	0	0	0	1	0	0	0	16534	971	34	2	1205	2	TRIM47	17	73872839	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	8510290	73872839	7322371	104	38843											
OSBPL1A	114876	ucsc.edu;bcgsc.ca	37	18	21914248	21914248	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	21914248	T	C	21914248	2	2	648	1	0	0	0	0	0	0	0	1	11284	1567	55	3		3	OSBPL1A	18	21914248	Silent	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10		21914248	56163000	105	38844											
B4GALT6	9331	bcgsc.ca	37	18	29218694	29218694	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	29218694	G	A	29218694	2	1	648	1	0	0	0	0	0	0	0	1	1275	1190	42	2		2	B4GALT6	18	29218694	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	7304446	29218694	48858554	106	38845											
MADCAM1	8174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	504882	504883	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	AT	504883	CC	AT	504882	3	1	648	1	0	0	0	0	1	0	0	0	9158	507	18	4	1084	4	MADCAM1	19	504882	Missense_Mutation	DNP	CC	TCGA-HE-A5NI-01A-11D-A26P-10		504882	58624101	107	38846											
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	4511773	4511773	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	4511773	G	A	4511773	2	1	648	1	0	0	0	0	0	0	0	1	12099	929	33	2		2	PLIN4	19	4511773	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	4006891	4511773	54617210	108	38847											
PLIN3	10226	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	4839279	4839279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	4839279	C	G	4839279	3	3	648	1	0	0	0	0	1	0	0	0	12098	912	32	4	78	4	PLIN3	19	4839279	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	327506	4839279	54289704	109	38848											
PLIN3	10226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4839466	4839466	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	4839466	A	C	4839466	3	2	648	1	0	0	0	0	1	0	0	0	12098	101	4	5	265	5	PLIN3	19	4839466	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	187	4839466	54289517	110	38849											
DCAF15	90379	hgsc.bcm.edu;broad.mit.edu	37	19	14070072	14070072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	14070072	G	A	14070072	3	1	648	1	0	0	0	0	1	0	0	0	4269	1203	42	2	1026	2	DCAF15	19	14070072	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	9230606	14070072	45058911	111	38850											
TECR	9524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14674655	14674657	+	In_Frame_Del	DEL	CGT	CGT	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	CGT	CGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	14674657	CGT	-	14674655	7	5	648	1	0	1	0	1	0	0	0	0	15757	639	23	0	225	0	TECR	19	14674655	In_Frame_Del	DEL	CGT	TCGA-HE-A5NI-01A-11D-A26P-10	604583	14674655	44454328	112	38851											
NAPA	8775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47996229	47996229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	47996229	T	C	47996229	3	2	648	1	0	0	0	0	1	0	0	0	10168	1464	51	3	357	3	NAPA	19	47996229	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	33321574	47996229	11132754	113	38852											
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52658860	52658860	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	52658860	T	-	52658860	7	5	648	1	0	1	0	1	0	0	0	0	18199	1722	60	0	736	0	ZNF836	19	52658860	Frame_Shift_Del	DEL	T	TCGA-HE-A5NI-01A-11D-A26P-10	4662631	52658860	6470123	114	38853											
BRSK1	84446	broad.mit.edu	37	19	55805597	55805597	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	55805597	G	T	55805597	2	4	648	1	0	0	0	0	0	0	0	1	1525	1132	40	4		4	BRSK1	19	55805597	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	3146737	55805597	3323386	115	38854											
ZNF274	10782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58724017	58724017	+	Silent	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	58724017	G	C	58724017	2	2	648	1	0	0	0	0	0	0	0	1	17821	1161	41	4		4	ZNF274	19	58724017	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2918420	58724017	404966	116	38855											
MZF1	7593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59082640	59082640	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	59082640	G	A	59082640	2	1	648	1	0	0	0	0	0	0	0	1	10115	1190	42	2		2	MZF1	19	59082640	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	358623	59082640	46343	117	38856											
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	8608961	8608961	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	8608961	T	G	8608961	3	3	648	1	0	0	0	0	1	0	0	0	12034	1828	64	5	281	5	PLCB1	20	8608961	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10		8608961	54416559	118	38857											
ASIP	434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	32856797	32856797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	G	32856797	A	G	32856797	3	3	648	1	0	0	0	0	1	0	0	0	1043	260	9	3	233	3	ASIP	20	32856797	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	24247836	32856797	30168723	119	38858											
SALL4	57167	hgsc.bcm.edu;bcgsc.ca	37	20	50401006	50401006	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	50401006	A	-	50401006	7	5	648	1	0	1	0	1	0	0	0	0	13826	333	12	0	205	0	SALL4	20	50401006	Frame_Shift_Del	DEL	A	TCGA-HE-A5NI-01A-11D-A26P-10	17544209	50401006	12624514	120	38859											
ARVCF	421	hgsc.bcm.edu	37	22	19967432	19967432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	19967432	G	T	19967432	3	4	648	1	0	0	0	0	1	0	0	0	1003	1252	44	4	1714	4	ARVCF	22	19967432	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		19967432	31337134	121	38860											
YPEL1	29799	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22064932	22064932	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	C	22064932	G	C	22064932	3	2	648	1	0	0	0	0	1	0	0	0	17501	1136	40	4	273	4	YPEL1	22	22064932	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2097500	22064932	29239634	122	38861											
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	33679190	33679190	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	A	33679190	G	A	33679190	2	1	648	1	0	0	0	0	0	0	0	1	8634	1281	45	2		2	LARGE	22	33679190	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	11614258	33679190	17625376	123	38862											
BCOR	54880	hgsc.bcm.edu;bcgsc.ca	37	X	39923132	39923132	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	39923132	G	T	39923132	2	4	648	1	0	0	0	0	0	0	0	1	1386	1335	47	4		4	BCOR	23	39923132	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		39923132	115347428	124	38863											
GATA1	2623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48650855	48650855	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	48650855	A	-	48650855	7	5	648	1	0	1	0	1	0	0	0	0	6260	217	8	0	734	0	GATA1	23	48650855	Frame_Shift_Del	DEL	A	TCGA-HE-A5NI-01A-11D-A26P-10	8727723	48650855	106619705	125	38864											
DCX	1641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	110654011	110654011	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	T	110654011	C	T	110654011	2	4	648	1	0	0	0	0	0	0	0	1	4320	871	31	1		1	DCX	23	110654011	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	62003156	110654011	44616549	126	38865											
PRRG3	79057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	150869380	150869380	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	-	150869380	C	-	150869380	7	5	648	1	0	1	0	1	0	0	0	0	12617	855	30	0	581	0	PRRG3	23	150869380	Frame_Shift_Del	DEL	C	TCGA-HE-A5NI-01A-11D-A26P-10	40215369	150869380	4401180	127	38866											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27106015	27106015	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	-	27106015	C	-	27106015	7	5	649	1	0	1	0	1	0	0	0	0	913	507	18	0	5704	0	ARID1A	1	27106015	Frame_Shift_Del	DEL	C	TCGA-HE-A5NJ-01A-11D-A26P-10		27106015	222144606	1	38867											
TMEM125	128218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43739036	43739036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	43739036	A	G	43739036	3	3	649	1	0	0	0	0	1	0	0	0	16049	217	8	3	645	3	TMEM125	1	43739036	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	16633021	43739036	205511585	2	38868											
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152127305	152127305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	152127305	C	T	152127305	3	4	649	1	0	0	0	0	1	0	0	0	13677	884	31	1	88	1	RPTN	1	152127305	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	108388269	152127305	97123316	3	38869											
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154108401	154108401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	C	154108401	T	C	154108401	3	2	649	1	0	0	0	0	1	0	0	0	10768	1530	53	3	4904	3	NUP210L	1	154108401	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	1981096	154108401	95142220	4	38870											
TMEM9	252839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201123024	201123024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	201123024	C	T	201123024	3	4	649	1	0	0	0	0	1	0	0	0	16229	507	18	2	543	2	TMEM9	1	201123024	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	47014623	201123024	48127597	5	38871											
GPN1	11321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27858007	27858007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	27858007	G	A	27858007	3	1	649	1	0	0	0	0	1	0	0	0	6624	1217	42	2	581	2	GPN1	2	27858007	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		27858007	215341366	6	38872											
RTN4	57142	bcgsc.ca	37	2	55254453	55254453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	55254453	G	T	55254453	3	4	649	1	0	0	0	0	1	0	0	0	13741	1029	36	4	2862	4	RTN4	2	55254453	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	27396446	55254453	187944920	7	38873											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73836707	73836707	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	73836707	C	T	73836707	4	4	649	1	0	0	0	0	0	1	0	0	535	827	29	2	12562	2	ALMS1	2	73836707	Nonsense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	18582254	73836707	169362666	8	38874											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	148676153	148676153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	148676153	A	G	148676153	3	3	649	1	0	0	0	0	1	0	0	0	223	439	16	3	980	3	ACVR2A	2	148676153	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	74839446	148676153	94523220	9	38875											
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	235949726	235949726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	235949726	C	G	235949726	3	3	649	1	0	0	0	0	1	0	0	0	14259	623	22	4	319	4	SH3BP4	2	235949726	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	87273573	235949726	7249647	10	38876											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	4859771	4859771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	4859771	G	A	4859771	3	1	649	1	0	0	0	0	1	0	0	0	7927	1175	41	2	8103	2	ITPR1	3	4859771	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		4859771	193162659	11	38877											
THUMPD3	25917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9406849	9406849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	9406849	G	A	9406849	3	1	649	1	0	0	0	0	1	0	0	0	15896	1291	45	2	99	2	THUMPD3	3	9406849	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	4547078	9406849	188615581	12	38878											
COL7A1	1294	hgsc.bcm.edu;bcgsc.ca	37	3	48610131	48610131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	-	48610131	T	-	48610131	7	5	649	1	0	1	0	1	0	0	0	0	3706	1722	60	0	2089	0	COL7A1	3	48610131	Frame_Shift_Del	DEL	T	TCGA-HE-A5NJ-01A-11D-A26P-10	39203282	48610131	149412299	13	38879											
IL17RD	54756	hgsc.bcm.edu;bcgsc.ca	37	3	57144293	57144293	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	-	57144293	C	-	57144293	7	5	649	1	0	1	0	1	0	0	0	0	7649	564	20	0	1902	0	IL17RD	3	57144293	Frame_Shift_Del	DEL	C	TCGA-HE-A5NJ-01A-11D-A26P-10	8534162	57144293	140878137	14	38880											
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151155196	151155196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	151155196	T	G	151155196	3	3	649	1	0	0	0	0	1	0	0	0	7604	1609	56	5	722	5	IGSF10	3	151155196	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	94010903	151155196	46867234	15	38881											
UGT2B28	54490	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	70146322	70146322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	70146322	A	T	70146322	3	4	649	1	0	0	0	0	1	0	0	0	16972	217	8	5	106	5	UGT2B28	4	70146322	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10		70146322	121007954	16	38882											
NPFFR2	10886	bcgsc.ca	37	4	73012838	73012838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	73012838	G	A	73012838	3	1	649	1	0	0	0	0	1	0	0	0	10585	1058	37	1	898	1	NPFFR2	4	73012838	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	2866516	73012838	118141438	17	38883											
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	111397929	111397929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	111397929	G	A	111397929	3	1	649	1	0	0	0	0	1	0	0	0	5130	971	34	2	361	2	ENPEP	4	111397929	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	38385091	111397929	79756347	18	38884											
CCT5	22948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10263419	10263419	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	10263419	G	A	10263419	2	1	649	1	0	0	0	0	0	0	0	1	2958	1161	41	2		2	CCT5	5	10263419	Silent	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		10263419	170651841	19	38885											
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71739709	71739709	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	71739709	C	T	71739709	2	4	649	1	0	0	0	0	0	0	0	1	17882	622	22	2		2	ZNF366	5	71739709	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	61476290	71739709	109175551	20	38886											
SLC12A2	6558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127477532	127477532	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	127477532	T	A	127477532	2	1	649	1	0	0	0	0	0	0	0	1	14396	1799	63	5		5	SLC12A2	5	127477532	Silent	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	55737823	127477532	53437728	21	38887											
SLC26A2	1836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149361289	149361289	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	C	149361289	T	C	149361289	2	2	649	1	0	0	0	0	0	0	0	1	14530	1693	59	3		3	SLC26A2	5	149361289	Silent	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	21883757	149361289	31553971	22	38888											
HCRTR2	3062	ucsc.edu;bcgsc.ca	37	6	55113587	55113587	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	55113587	C	G	55113587	3	3	649	1	0	0	0	0	1	0	0	0	7009	855	30	4	380	4	HCRTR2	6	55113587	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		55113587	116001480	23	38889											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160467594	160467594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	C	160467594	G	C	160467594	3	2	649	1	0	0	0	0	1	0	0	0	7583	1020	36	4	2026	4	IGF2R	6	160467594	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	105354007	160467594	10647473	24	38890											
ISPD	729920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	16255771	16255771	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	C	16255771	G	C	16255771	3	2	649	1	0	0	0	0	1	0	0	0	7871	991	35	4	192	4	ISPD	7	16255771	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		16255771	142882892	25	38891											
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75183809	75183809	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	75183809	C	T	75183809	2	4	649	1	0	0	0	0	0	0	0	1	7121	639	23	1		1	HIP1	7	75183809	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	58928038	75183809	83954854	26	38892											
CD36	948	broad.mit.edu;bcgsc.ca	37	7	80302113	80302113	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	80302113	A	T	80302113	4	4	649	1	0	0	0	0	0	1	0	0	3009	15	1	5	1191	5	CD36	7	80302113	Nonsense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	5118304	80302113	78836550	27	38893											
HIPK2	28996	ucsc.edu;bcgsc.ca	37	7	139305166	139305166	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	139305166	A	T	139305166	3	4	649	1	0	0	0	0	1	0	0	0	7124	188	7	5	1869	5	HIPK2	7	139305166	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	59003053	139305166	19833497	28	38894											
PAXIP1	22976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	154767474	154767474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	154767474	G	A	154767474	3	1	649	1	0	0	0	0	1	0	0	0	11494	1144	40	1	2267	1	PAXIP1	7	154767474	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	15462308	154767474	4371189	29	38895											
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	8235300	8235300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	8235300	A	G	8235300	3	3	649	1	0	0	0	0	1	0	0	0	14223	72	3	3	3605	3	SGK223	8	8235300	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10		8235300	138128722	30	38896											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52359698	52359698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	52359698	T	A	52359698	3	1	649	1	0	0	0	0	1	0	0	0	12861	1580	55	5	3048	5	PXDNL	8	52359698	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	44124398	52359698	94004324	31	38897											
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53555097	53555097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	53555097	T	G	53555097	3	3	649	1	0	0	0	0	1	0	0	0	13112	1609	56	5	661	5	RB1CC1	8	53555097	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	1195399	53555097	92808925	32	38898											
UTP23	84294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	117782585	117782585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	117782585	C	T	117782585	3	4	649	1	0	0	0	0	1	0	0	0	17112	826	29	2	349	2	UTP23	8	117782585	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	64227488	117782585	28581437	33	38899											
FAM22F	54754	bcgsc.ca	37	9	97082579	97082579	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	97082579	G	A	97082579	4	1	649	1	0	0	0	0	0	1	0	0	5549	1328	46	2	1003	2	FAM22F	9	97082579	Nonsense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		97082579	44130852	34	38900											
IDI2	91734	broad.mit.edu	37	10	1066741	1066741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	1066741	C	T	1066741	3	4	649	1	0	0	0	0	1	0	0	0	7507	536	19	1	359	1	IDI2	10	1066741	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		1066741	134468006	35	38901											
FAM21C	253725	broad.mit.edu	37	10	46282636	46282644	+	In_Frame_Del	DEL	GAGGCCGGT	GAGGCCGGT	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	GAGGCCGGT	GAGGCCGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	-	46282644	GAGGCCGGT	-	46282636	7	5	649	1	0	1	0	1	0	0	0	0	5546	1175	41	0	3071	0	FAM21C	10	46282636	In_Frame_Del	DEL	GAGGCCGGT	TCGA-HE-A5NJ-01A-11D-A26P-10	45215895	46282636	89252111	36	38902											
MYPN	84665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	69959137	69959137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	69959137	C	T	69959137	3	4	649	1	0	0	0	0	1	0	0	0	10105	507	18	2	3360	2	MYPN	10	69959137	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	23676501	69959137	65575610	37	38903											
TRIM8	81603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104416093	104416093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	104416093	C	A	104416093	3	1	649	1	0	0	0	0	1	0	0	0	16560	854	30	4	1017	4	TRIM8	10	104416093	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	34456956	104416093	31118654	38	38904											
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94113422	94113422	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	94113422	T	A	94113422	3	1	649	1	0	0	0	0	1	0	0	0	6720	1783	62	5	110	5	GPR83	11	94113422	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10		94113422	40893094	39	38905											
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94340737	94340737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	94340737	A	G	94340737	3	3	649	1	0	0	0	0	1	0	0	0	11967	449	16	3	1825	3	PIWIL4	11	94340737	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	227315	94340737	40665779	40	38906											
ARHGAP32	9743	broad.mit.edu	37	11	128936739	128936739	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	128936739	T	A	128936739	3	1	649	1	0	0	0	0	1	0	0	0	881	1609	56	5	5817	5	ARHGAP32	11	128936739	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	34596002	128936739	6069777	41	38907											
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64827226	64827226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	64827226	C	A	64827226	3	1	649	1	0	0	0	0	1	0	0	0	17462	825	29	4	2365	4	XPOT	12	64827226	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		64827226	69024669	42	38908											
UHRF1BP1L	23074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100453199	100453199	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	100453199	C	G	100453199	3	3	649	1	0	0	0	0	1	0	0	0	16981	884	31	4	2570	4	UHRF1BP1L	12	100453199	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	35625973	100453199	33398696	43	38909											
SCYL2	55681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100707272	100707272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	100707272	A	T	100707272	3	4	649	1	0	0	0	0	1	0	0	0	13961	14	1	5	947	5	SCYL2	12	100707272	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	254073	100707272	33144623	44	38910											
IFT81	28981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110565896	110565896	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	110565896	C	T	110565896	4	4	649	1	0	0	0	0	0	1	0	0	7572	528	19	1	196	1	IFT81	12	110565896	Nonsense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	9858624	110565896	23285999	45	38911											
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	53624827	53624827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	53624827	C	A	53624827	3	1	649	1	0	0	0	0	1	0	0	0	10862	681	24	4	1472	4	OLFM4	13	53624827	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		53624827	61545051	46	38912											
C14orf105	55195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	57960296	57960296	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	57960296	T	A	57960296	2	1	649	1	0	0	0	0	0	0	0	1	1739	1683	59	5		5	C14orf105	14	57960296	Silent	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10		57960296	49389244	47	38913											
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	73712877	73712877	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	73712877	T	G	73712877	3	3	649	1	0	0	0	0	1	0	0	0	11435	1522	53	5	342	5	PAPLN	14	73712877	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	15752581	73712877	33636663	48	38914											
TDP1	55775	bcgsc.ca	37	14	90459808	90459808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	90459808	G	T	90459808	3	4	649	1	0	0	0	0	1	0	0	0	15740	1319	46	4	1568	4	TDP1	14	90459808	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	16746931	90459808	16889732	49	38915											
SERPINA6	866	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94780584	94780584	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	94780584	A	T	94780584	3	4	649	1	0	0	0	0	1	0	0	0	14106	214	8	5	831	5	SERPINA6	14	94780584	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	4320776	94780584	12568956	50	38916											
NUSAP1	51203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41669495	41669495	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	41669495	C	T	41669495	4	4	649	1	0	0	0	0	0	1	0	0	10785	595	21	2	1263	2	NUSAP1	15	41669495	Nonsense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		41669495	60861897	51	38917											
SHF	90525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45491143	45491143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	45491143	G	T	45491143	3	4	649	1	0	0	0	0	1	0	0	0	14290	1348	47	4	1169	4	SHF	15	45491143	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	3821648	45491143	57040249	52	38918											
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75499667	75499667	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	75499667	C	T	75499667	2	4	649	1	0	0	0	0	0	0	0	1	1795	805	28	2		2	C15orf39	15	75499667	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	30008524	75499667	27031725	53	38919											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3901001	3901001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	3901001	G	A	3901001	3	1	649	1	0	0	0	0	1	0	0	0	3863	1294	45	2	7353	2	CREBBP	16	3901001	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		3901001	86453752	54	38920											
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	4908004	4908004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	4908004	C	T	4908004	3	4	649	1	0	0	0	0	1	0	0	0	16904	838	29	2	269	2	UBN1	16	4908004	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	1007003	4908004	85446749	55	38921											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21051260	21051260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	21051260	C	A	21051260	3	1	649	1	0	0	0	0	1	0	0	0	4605	477	17	4	7825	4	DNAH3	16	21051260	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	16143256	21051260	69303493	56	38922											
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84094306	84094306	+	Silent	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	C	84094306	G	C	84094306	2	2	649	1	0	0	0	0	0	0	0	1	9368	1277	45	4		4	MBTPS1	16	84094306	Silent	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	63043046	84094306	6260447	57	38923											
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87445209	87445209	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	87445209	T	A	87445209	3	1	649	1	0	0	0	0	1	0	0	0	17595	1551	54	5	150	5	ZCCHC14	16	87445209	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	3350903	87445209	2909544	58	38924											
FXR2	9513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7497319	7497319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	7497319	T	G	7497319	3	3	649	1	0	0	0	0	1	0	0	0	6123	1493	52	5	925	5	FXR2	17	7497319	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10		7497319	73697891	59	38925											
WDR16	146845	broad.mit.edu	37	17	9503401	9503402	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	9503402	-	T	9503401	7	5	649	1	0	1	1	0	0	0	0	0	17288	796	28	0	676	0	WDR16	17	9503401	Frame_Shift_Ins	INS	-	TCGA-HE-A5NJ-01A-11D-A26P-10	2006082	9503401	71691809	60	38926											
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10366950	10366950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	G	10366950	T	G	10366950	3	3	649	1	0	0	0	0	1	0	0	0	10044	1783	62	5	5292	5	MYH4	17	10366950	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	863549	10366950	70828260	61	38927											
STAC2	342667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37373422	37373422	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	37373422	G	A	37373422	2	1	649	1	0	0	0	0	0	0	0	1	15252	1020	36	2		2	STAC2	17	37373422	Silent	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	27006472	37373422	43821788	62	38928											
LLGL2	3993	broad.mit.edu	37	17	73565071	73565071	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	73565071	C	A	73565071	2	1	649	1	0	0	0	0	0	0	0	1	8841	697	25	4		4	LLGL2	17	73565071	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	36191649	73565071	7630139	63	38929											
NEDD4L	23327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	56033337	56033337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	C	56033337	G	C	56033337	3	2	649	1	0	0	0	0	1	0	0	0	10318	942	33	4	2050	4	NEDD4L	18	56033337	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		56033337	22043911	64	38930											
LPPR3	0	hgsc.bcm.edu	37	19	815207	815207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	815207	G	A	815207	3	1	649	1	0	0	0	0	1	0	0	0	8933	1086	38	1	1874	1	LPPR3	19	815207	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		815207	58313776	65	38931											
STK11	6794	ucsc.edu	37	19	1220643	1220643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	1220643	C	T	1220643	3	4	649	1	0	0	0	0	1	0	0	0	15299	739	26	2	679	2	STK11	19	1220643	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	405436	1220643	57908340	66	38932											
ZNF57	126295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2915555	2915555	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	2915555	C	T	2915555	2	4	649	1	0	0	0	0	0	0	0	1	18013	825	29	2		2	ZNF57	19	2915555	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	1694912	2915555	56213428	67	38933											
ZFR2	23217	hgsc.bcm.edu;broad.mit.edu	37	19	3808936	3808936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	3808936	G	A	3808936	3	1	649	1	0	0	0	0	1	0	0	0	17672	1203	42	2	352	2	ZFR2	19	3808936	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	893381	3808936	55320047	68	38934											
IL27RA	9466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14150421	14150421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	14150421	G	A	14150421	3	1	649	1	0	0	0	0	1	0	0	0	7688	1203	42	2	330	2	IL27RA	19	14150421	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	10341485	14150421	44978562	69	38935											
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17322846	17322846	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	17322846	G	A	17322846	2	1	649	1	0	0	0	0	0	0	0	1	10092	1103	39	1		1	MYO9B	19	17322846	Silent	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	3172425	17322846	41806137	70	38936											
USF2	7392	bcgsc.ca	37	19	35761401	35761402	+	In_Frame_Ins	INS	-	-	TCAGCGGGGAGGCACGATTTGCCT	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	TCAGCGGGGAGGCACGATTTGCCT	35761402	-	TCAGCGGGGAGGCACGATTTGCCT	35761401	7	5	649	1	0	1	1	0	0	0	0	0	17045	1377	48	0	499	0	USF2	19	35761401	In_Frame_Ins	INS	-	TCGA-HE-A5NJ-01A-11D-A26P-10	18438555	35761401	23367582	71	38937											
MAP3K10	4294	hgsc.bcm.edu	37	19	40698281	40698281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	40698281	G	T	40698281	3	4	649	1	0	0	0	0	1	0	0	0	9251	1203	42	4	345	4	MAP3K10	19	40698281	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	4936880	40698281	18430702	72	38938											
CYP2A6	1548	ucsc.edu;bcgsc.ca	37	19	41349763	41349763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	41349763	G	T	41349763	3	4	649	1	0	0	0	0	1	0	0	0	4164	1232	43	4	65	4	CYP2A6	19	41349763	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	651482	41349763	17779220	73	38939											
ZNF221	7638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44471195	44471195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	C	44471195	G	C	44471195	3	2	649	1	0	0	0	0	1	0	0	0	17787	942	33	4	1555	4	ZNF221	19	44471195	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	3121432	44471195	14657788	74	38940											
SEPT5	5413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19709430	19709430	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	19709430	C	T	19709430	4	4	649	1	0	0	0	0	0	1	0	0	14080	776	27	1	938	1	SEPT5	22	19709430	Nonsense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		19709430	31595136	75	38941											
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30416249	30416249	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	30416249	C	T	30416249	2	4	649	1	0	0	0	0	0	0	0	1	9952	747	26	2		2	MTMR3	22	30416249	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	10706819	30416249	20888317	76	38942											
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	24750526	24750526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	24750526	T	A	24750526	3	1	649	1	0	0	0	0	1	0	0	0	12194	1490	52	5	1770	5	POLA1	23	24750526	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10		24750526	130520034	77	38943											
GATA1	2623	hgsc.bcm.edu	37	X	48652221	48652221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	48652221	C	T	48652221	3	4	649	1	0	0	0	0	1	0	0	0	6260	759	27	1	910	1	GATA1	23	48652221	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	23901695	48652221	106618339	78	38944											
FAM155B	27112	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	68748896	68748896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	T	68748896	C	T	68748896	3	4	649	1	0	0	0	0	1	0	0	0	5470	768	27	1	928	1	FAM155B	23	68748896	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	20096675	68748896	86521664	79	38945											
TBC1D8B	54885	broad.mit.edu	37	X	106109170	106109170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	A	106109170	G	A	106109170	3	1	649	1	0	0	0	0	1	0	0	0	15638	1319	46	2	2697	2	TBC1D8B	23	106109170	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	37360274	106109170	49161390	80	38946											
DDI2	84301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15956933	15956933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	15956933	T	G	15956933	3	3	650	1	0	0	0	0	1	0	0	0	4331	1435	50	5	392	5	DDI2	1	15956933	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10		15956933	233293688	1	38947											
C1orf213	148898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	23696043	23696043	+	RNA	SNP	A	A	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	23696043	A	C	23696043	1	2	650	0	1	0	0	0	0	0	0	0	2032	180	7	5		5	C1orf213	1	23696043	RNA	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	7739110	23696043	225554578	2	38948											
C1orf173	127254	broad.mit.edu	37	1	75038719	75038719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	75038719	G	A	75038719	3	1	650	1	0	0	0	0	1	0	0	0	2016	971	34	2	1921	2	C1orf173	1	75038719	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	51342676	75038719	174211902	3	38949											
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78414969	78414969	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	78414969	A	G	78414969	2	3	650	1	0	0	0	0	0	0	0	1	6099	291	11	3		3	FUBP1	1	78414969	Silent	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	3376250	78414969	170835652	4	38950											
RBMXL1	494115	broad.mit.edu	37	1	89449426	89449426	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	89449426	A	-	89449426	7	5	650	1	0	1	0	1	0	0	0	0	13166	127	5	0	1092	0	RBMXL1	1	89449426	Frame_Shift_Del	DEL	A	TCGA-HE-A5NK-01A-11D-A26P-10	11034457	89449426	159801195	5	38951											
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90179188	90179188	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	90179188	T	C	90179188	2	2	650	1	0	0	0	0	0	0	0	1	9030	1471	51	3		3	LRRC8C	1	90179188	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	729762	90179188	159071433	6	38952											
IQGAP3	128239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156517916	156517917	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	156517917	AG	-	156517916	7	5	650	1	0	1	0	1	0	0	0	0	7823	175	7	0	2722	0	IQGAP3	1	156517916	Frame_Shift_Del	DEL	AG	TCGA-HE-A5NK-01A-11D-A26P-10	66338728	156517916	92732705	7	38953											
LY9	4063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160786562	160786562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	160786562	A	C	160786562	3	2	650	1	0	0	0	0	1	0	0	0	9108	243	9	5	1401	5	LY9	1	160786562	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	4268646	160786562	88464059	8	38954											
SLC19A2	10560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169446750	169446750	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	169446750	G	A	169446750	2	1	650	1	0	0	0	0	0	0	0	1	14442	1252	44	2		2	SLC19A2	1	169446750	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	8660188	169446750	79803871	9	38955											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181701628	181701628	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	181701628	G	A	181701628	2	1	650	1	0	0	0	0	0	0	0	1	2544	1074	38	1		1	CACNA1E	1	181701628	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	12254878	181701628	67548993	10	38956											
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	240370577	240370577	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	240370577	A	T	240370577	3	4	650	1	0	0	0	0	1	0	0	0	5957	130	5	5	2483	5	FMN2	1	240370577	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	58668949	240370577	8880044	11	38957											
KIDINS220	57498	broad.mit.edu	37	2	8919107	8919107	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	8919107	T	A	8919107	3	1	650	1	0	0	0	0	1	0	0	0	8278	1754	61	5	2830	5	KIDINS220	2	8919107	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10		8919107	234280266	12	38958											
VWA3B	200403	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	98907042	98907042	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	98907042	G	A	98907042	2	1	650	1	0	0	0	0	0	0	0	1	17253	933	33	2		2	VWA3B	2	98907042	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	89987935	98907042	144292331	13	38959											
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152426612	152426612	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	152426612	A	T	152426612	3	4	650	1	0	0	0	0	1	0	0	0	10309	420	15	5	8569	5	NEB	2	152426612	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	53519570	152426612	90772761	14	38960											
CCDC141	285025	broad.mit.edu	37	2	179701995	179701995	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	179701995	A	T	179701995	2	4	650	1	0	0	0	0	0	0	0	1	2777	175	7	5		5	CCDC141	2	179701995	Silent	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	27275383	179701995	63497378	15	38961											
PLCL1	5334	ucsc.edu;bcgsc.ca	37	2	198949559	198949559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	198949559	C	G	198949559	3	3	650	1	0	0	0	0	1	0	0	0	12046	876	31	4	1324	4	PLCL1	2	198949559	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	19247564	198949559	44249814	16	38962											
CPS1	1373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	211471605	211471605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	211471605	G	T	211471605	3	4	650	1	0	0	0	0	1	0	0	0	3825	1319	46	4	2224	4	CPS1	2	211471605	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	12522046	211471605	31727768	17	38963											
IKZF2	22807	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	213872649	213872649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	213872649	T	C	213872649	3	2	650	1	0	0	0	0	1	0	0	0	7622	1696	59	3	568	3	IKZF2	2	213872649	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	2401044	213872649	29326724	18	38964											
ABCB6	10058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220075010	220075011	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	AG	220075011	CA	AG	220075010	3	1	650	1	0	0	0	0	1	0	0	0	45	478	17	4	174	4	ABCB6	2	220075010	Missense_Mutation	DNP	CA	TCGA-HE-A5NK-01A-11D-A26P-10	6202361	220075010	23124363	19	38965											
EIF4E2	9470	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233428989	233428989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	233428989	G	T	233428989	3	4	650	1	0	0	0	0	1	0	0	0	5032	1348	47	4	317	4	EIF4E2	2	233428989	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	13353979	233428989	9770384	20	38966											
TMEM43	79188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	14183165	14183165	+	Missense_Mutation	SNP	C	C	T	rs63750743	bycluster	TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	14183165	C	T	14183165	3	4	650	1	0	0	0	0	1	0	0	0	16179	893	31	1	1119	1	TMEM43	3	14183165	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		14183165	183839265	21	38967											
SMARCC1	6599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47718172	47718172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	47718172	C	A	47718172	3	1	650	1	0	0	0	0	1	0	0	0	14788	478	17	4	1693	4	SMARCC1	3	47718172	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	33535007	47718172	150304258	22	38968											
COL7A1	1294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48604393	48604393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	48604393	C	A	48604393	3	1	650	1	0	0	0	0	1	0	0	0	3706	681	24	4	697	4	COL7A1	3	48604393	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	886221	48604393	149418037	23	38969											
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49718019	49718019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	49718019	T	C	49718019	3	2	650	1	0	0	0	0	1	0	0	0	768	1551	54	3	1310	3	APEH	3	49718019	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	1113626	49718019	148304411	24	38970											
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	53844325	53844325	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	53844325	A	-	53844325	7	5	650	1	0	1	0	1	0	0	0	0	2543	202	7	0	6550	0	CACNA1D	3	53844325	Frame_Shift_Del	DEL	A	TCGA-HE-A5NK-01A-11D-A26P-10	4126306	53844325	144178105	25	38971											
SLC15A2	6565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121649781	121649781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	121649781	A	G	121649781	3	3	650	1	0	0	0	0	1	0	0	0	14412	43	2	3	1718	3	SLC15A2	3	121649781	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	67805456	121649781	76372649	26	38972											
HEG1	57493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124748131	124748131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	124748131	C	T	124748131	3	4	650	1	0	0	0	0	1	0	0	0	7051	797	28	2	3691	2	HEG1	3	124748131	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	3098350	124748131	73274299	27	38973											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130095526	130095526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	130095526	G	T	130095526	3	4	650	1	0	0	0	0	1	0	0	0	3704	971	34	4	520	4	COL6A5	3	130095526	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	5347395	130095526	67926904	28	38974											
TBL1XR1	79718	broad.mit.edu;bcgsc.ca	37	3	176771657	176771657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	176771657	C	G	176771657	3	3	650	1	0	0	0	0	1	0	0	0	15652	564	20	4	1488	4	TBL1XR1	3	176771657	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	46676131	176771657	21250773	29	38975											
KLHL24	54800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183381404	183381404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	183381404	C	A	183381404	3	1	650	1	0	0	0	0	1	0	0	0	8386	797	28	4	1085	4	KLHL24	3	183381404	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	6609747	183381404	14641026	30	38976											
YEATS2	55689	broad.mit.edu;bcgsc.ca	37	3	183476664	183476664	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	183476664	A	-	183476664	7	5	650	1	0	1	0	1	0	0	0	0	17484	131	5	0	1613	0	YEATS2	3	183476664	Frame_Shift_Del	DEL	A	TCGA-HE-A5NK-01A-11D-A26P-10	95260	183476664	14545766	31	38977											
CNGA1	1259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	47938977	47938977	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	47938977	T	-	47938977	7	5	650	1	0	1	0	1	0	0	0	0	3598	1406	49	0	542	0	CNGA1	4	47938977	Frame_Shift_Del	DEL	T	TCGA-HE-A5NK-01A-11D-A26P-10		47938977	143215299	32	38978											
USO1	8615	broad.mit.edu	37	4	76726384	76726384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	76726384	A	G	76726384	3	3	650	1	0	0	0	0	1	0	0	0	17051	410	15	3	2132	3	USO1	4	76726384	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	28787407	76726384	114427892	33	38979											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	85716095	85716095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	85716095	G	T	85716095	3	4	650	1	0	0	0	0	1	0	0	0	17282	1174	41	4	7571	4	WDFY3	4	85716095	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	8989711	85716095	105438181	34	38980											
PDE5A	8654	ucsc.edu;bcgsc.ca	37	4	120528177	120528177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	120528177	T	A	120528177	3	1	650	1	0	0	0	0	1	0	0	0	11651	1464	51	5	2279	5	PDE5A	4	120528177	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	34812082	120528177	70626099	35	38981											
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	149356416	149356416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	149356416	T	C	149356416	3	2	650	1	0	0	0	0	1	0	0	0	10638	1493	52	3	1389	3	NR3C2	4	149356416	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	28828239	149356416	41797860	36	38982											
NAF1	92345	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	164061509	164061509	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	164061509	T	C	164061509	2	2	650	1	0	0	0	0	0	0	0	1	10147	1683	59	3		3	NAF1	4	164061509	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	14705093	164061509	27092767	37	38983											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37121780	37121780	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	37121780	A	G	37121780	2	3	650	1	0	0	0	0	0	0	0	1	2303	98	4	3		3	C5orf42	5	37121780	Silent	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10		37121780	143793480	38	38984											
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	64587271	64587271	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	64587271	T	A	64587271	3	1	650	1	0	0	0	0	1	0	0	0	270	1493	52	5	2016	5	ADAMTS6	5	64587271	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	27465491	64587271	116327989	39	38985											
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72864379	72864379	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	72864379	T	A	72864379	2	1	650	1	0	0	0	0	0	0	0	1	17109	1828	64	5		5	UTP15	5	72864379	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	8277108	72864379	108050881	40	38986											
CCDC112	153733	broad.mit.edu;bcgsc.ca	37	5	114603580	114603581	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	TT	114603581	-	TT	114603580	7	5	650	1	0	1	1	0	0	0	0	0	2751	913	32	0	10	0	CCDC112	5	114603580	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	41739201	114603580	66311680	41	38987											
ARSI	340075	bcgsc.ca	37	5	149678111	149678111	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	149678111	G	C	149678111	3	2	650	1	0	0	0	0	1	0	0	0	994	991	35	4	1337	4	ARSI	5	149678111	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	35074531	149678111	31237149	42	38988											
MRPL22	29093	broad.mit.edu	37	5	154346429	154346429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	154346429	G	A	154346429	3	1	650	1	0	0	0	0	1	0	0	0	9795	1087	38	1	619	1	MRPL22	5	154346429	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	4668318	154346429	26568831	43	38989											
SCUBE3	222663	hgsc.bcm.edu	37	6	35182249	35182249	+	Silent	SNP	C	C	T	rs113302940		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	35182249	C	T	35182249	2	4	650	1	0	0	0	0	0	0	0	1	13959	610	22	2		2	SCUBE3	6	35182249	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		35182249	135932818	44	38990											
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49936558	49936558	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	49936558	T	C	49936558	2	2	650	1	0	0	0	0	0	0	0	1	4404	1606	56	3		3	DEFB113	6	49936558	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	14754309	49936558	121178509	45	38991											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51750667	51750667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	51750667	G	T	51750667	3	4	650	1	0	0	0	0	1	0	0	0	11978	1357	47	4	5142	4	PKHD1	6	51750667	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	1814109	51750667	119364400	46	38992											
COL9A1	1297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70926682	70926682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	70926682	G	T	70926682	3	4	650	1	0	0	0	0	1	0	0	0	3709	1000	35	4	85	4	COL9A1	6	70926682	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	19176015	70926682	100188385	47	38993											
ALDH8A1	64577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	135260502	135260502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	135260502	A	G	135260502	3	3	650	1	0	0	0	0	1	0	0	0	505	449	16	3	985	3	ALDH8A1	6	135260502	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	64333820	135260502	35854565	48	38994											
LPA	4018	hgsc.bcm.edu;bcgsc.ca	37	6	161071523	161071523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	161071523	G	T	161071523	3	4	650	1	0	0	0	0	1	0	0	0	8910	1000	35	4	6218	4	LPA	6	161071523	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	25811021	161071523	10043544	49	38995											
SEPT7	989	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	35923576	35923576	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	35923576	T	A	35923576	3	1	650	1	0	0	0	0	1	0	0	0	14082	1638	57	5	827	5	SEPT7	7	35923576	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10		35923576	123215087	50	38996											
AUTS2	26053	broad.mit.edu	37	7	70255120	70255120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	70255120	A	T	70255120	3	4	650	1	0	0	0	0	1	0	0	0	1225	43	2	5	3137	5	AUTS2	7	70255120	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	34331544	70255120	88883543	51	38997											
AKAP9	10142	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91631221	91631221	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	91631221	A	T	91631221	4	4	650	1	0	0	0	0	0	1	0	0	459	363	13	5	2020	5	AKAP9	7	91631221	Nonsense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	21376101	91631221	67507442	52	38998											
NPTX2	4885	bcgsc.ca	37	7	98257767	98257767	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	98257767	C	-	98257767	7	5	650	1	0	1	0	1	0	0	0	0	10610	738	26	0	1140	0	NPTX2	7	98257767	Frame_Shift_Del	DEL	C	TCGA-HE-A5NK-01A-11D-A26P-10	6626546	98257767	60880896	53	38999											
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	128119287	128119287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	128119287	G	T	128119287	3	4	650	1	0	0	0	0	1	0	0	0	9507	942	33	4	288	4	METTL2B	7	128119287	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	29861520	128119287	31019376	54	39000											
TAS2R39	259285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142880641	142880641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	142880641	G	A	142880641	3	1	650	1	0	0	0	0	1	0	0	0	15588	1291	45	2	132	2	TAS2R39	7	142880641	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	14761354	142880641	16258022	55	39001											
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149430813	149430813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	149430813	C	G	149430813	3	3	650	1	0	0	0	0	1	0	0	0	8446	855	30	4	2831	4	KRBA1	7	149430813	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	6550172	149430813	9707850	56	39002											
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	150069172	150069172	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	150069172	C	A	150069172	4	1	650	1	0	0	0	0	0	1	0	0	13240	893	31	4	1019	4	REPIN1	7	150069172	Nonsense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	638359	150069172	9069491	57	39003											
DLGAP2	9228	broad.mit.edu	37	8	1513950	1513950	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	1513950	C	T	1513950	2	4	650	1	0	0	0	0	0	0	0	1	4562	535	19	1		1	DLGAP2	8	1513950	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		1513950	144850072	58	39004											
MTUS1	57509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17612803	17612803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	17612803	A	G	17612803	3	3	650	1	0	0	0	0	1	0	0	0	9972	72	3	3	3673	3	MTUS1	8	17612803	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	16098853	17612803	128751219	59	39005											
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87423961	87423961	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	87423961	G	C	87423961	3	2	650	1	0	0	0	0	1	0	0	0	17427	971	34	4	945	4	WWP1	8	87423961	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	69811158	87423961	58940061	60	39006											
EIF3H	8667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	117661151	117661151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	117661151	T	G	117661151	3	3	650	1	0	0	0	0	1	0	0	0	5020	1609	56	5	348	5	EIF3H	8	117661151	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	30237190	117661151	28702871	61	39007											
PLIN2	123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19126158	19126158	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	19126158	C	A	19126158	2	1	650	1	0	0	0	0	0	0	0	1	12097	581	21	4		4	PLIN2	9	19126158	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		19126158	122087273	62	39008											
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88233969	88233969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	88233969	C	G	88233969	3	3	650	1	0	0	0	0	1	0	0	0	400	855	30	4	1456	4	AGTPBP1	9	88233969	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	69107811	88233969	52979462	63	39009											
ASS1	445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	133342187	133342187	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	133342187	G	C	133342187	5	2	650	1	0	0	0	0	0	0	1	0	1061	1275	44	4	514	4	ASS1	9	133342187	Splice_Site	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	45108218	133342187	7871244	64	39010											
PHPT1	29085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139744582	139744582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	139744582	A	G	139744582	3	3	650	1	0	0	0	0	1	0	0	0	11867	449	16	3	284	3	PHPT1	9	139744582	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	6402395	139744582	1468849	65	39011											
ADARB2	105	broad.mit.edu	37	10	1405639	1405640	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	1405640	-	G	1405639	7	5	650	1	0	1	1	0	0	0	0	0	283	884	31	0	1590	0	ADARB2	10	1405639	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10		1405639	134129108	66	39012											
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	43659419	G	T	43659419	3	4	650	1	0	0	0	0	1	0	0	0	3941	1281	45	4	1100	4	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	42253780	43659419	91875328	67	39013											
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103917872	103917872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	103917872	G	A	103917872	3	1	650	1	0	0	0	0	1	0	0	0	10536	1290	45	2	526	2	NOLC1	10	103917872	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	60258453	103917872	31616875	68	39014											
CNGA4	1262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6261868	6261868	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	6261868	G	C	6261868	3	2	650	1	0	0	0	0	1	0	0	0	3601	942	33	4	858	4	CNGA4	11	6261868	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		6261868	128744648	69	39015											
DNHD1	144132	broad.mit.edu	37	11	6561201	6561201	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	6561201	C	-	6561201	7	5	650	1	0	1	0	1	0	0	0	0	4670	825	29	0	3587	0	DNHD1	11	6561201	Frame_Shift_Del	DEL	C	TCGA-HE-A5NK-01A-11D-A26P-10	299333	6561201	128445315	70	39016											
OR2AG2	338755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6789370	6789370	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	6789370	G	T	6789370	2	4	650	1	0	0	0	0	0	0	0	1	10992	1280	45	4		4	OR2AG2	11	6789370	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	228169	6789370	128217146	71	39017											
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66384484	66384484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	66384484	T	C	66384484	3	2	650	1	0	0	0	0	1	0	0	0	13128	1551	54	3	295	3	RBM14	11	66384484	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	59595114	66384484	68622032	72	39018											
FGF3	2248	broad.mit.edu;bcgsc.ca	37	11	69625251	69625251	+	Missense_Mutation	SNP	C	C	T	rs148203315		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	69625251	C	T	69625251	3	4	650	1	0	0	0	0	1	0	0	0	5860	768	27	1	181	1	FGF3	11	69625251	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	3240767	69625251	65381265	73	39019											
AQP11	282679	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	77301546	77301546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	77301546	A	G	77301546	3	3	650	1	0	0	0	0	1	0	0	0	823	304	11	3	511	3	AQP11	11	77301546	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	7676295	77301546	57704970	74	39020											
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	95712439	95712440	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	95712440	-	T	95712439	7	5	650	1	0	1	1	0	0	0	0	0	9213	330	12	0	330	0	MAML2	11	95712439	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	18410893	95712439	39294077	75	39021											
KIAA1377	57562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	101832493	101832493	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	101832493	C	G	101832493	3	3	650	1	0	0	0	0	1	0	0	0	8234	827	29	4	749	4	KIAA1377	11	101832493	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	6120054	101832493	33174023	76	39022											
OR8B2	26595	bcgsc.ca	37	11	124252684	124252692	+	In_Frame_Del	DEL	GGAGGAGGG	GGAGGAGGG	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GGAGGAGGG	GGAGGAGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	124252692	GGAGGAGGG	-	124252684	7	5	650	1	0	1	0	1	0	0	0	0	11234	1357	47	0	388	0	OR8B2	11	124252684	In_Frame_Del	DEL	GGAGGAGGG	TCGA-HE-A5NK-01A-11D-A26P-10	22420191	124252684	10753832	77	39023											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2763057	2763057	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	2763057	C	T	2763057	2	4	650	1	0	0	0	0	0	0	0	1	2542	874	31	1		1	CACNA1C	12	2763057	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		2763057	131088838	78	39024											
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9242617	9242617	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	9242617	T	A	9242617	3	1	650	1	0	0	0	0	1	0	0	0	4	1841	64	5	1889	5	A2M	12	9242617	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	6479560	9242617	124609278	79	39025											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	71002988	71002988	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	71002988	G	A	71002988	2	1	650	1	0	0	0	0	0	0	0	1	12809	1219	43	2		2	PTPRB	12	71002988	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	61760371	71002988	62848907	80	39026											
HIP1R	9026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123342922	123342922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	123342922	G	A	123342922	3	1	650	1	0	0	0	0	1	0	0	0	7122	1203	42	2	2068	2	HIP1R	12	123342922	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	52339934	123342922	10508973	81	39027											
PGAM5	192111	hgsc.bcm.edu;bcgsc.ca	37	12	133294130	133294130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	133294130	T	C	133294130	3	2	650	1	0	0	0	0	1	0	0	0	11783	1435	50	3	486	3	PGAM5	12	133294130	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	9951208	133294130	557765	82	39028											
MTRF1	9617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41791352	41791352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	41791352	C	T	41791352	3	4	650	1	0	0	0	0	1	0	0	0	9966	594	21	2	104	2	MTRF1	13	41791352	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		41791352	73378526	83	39029											
SAV1	60485	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	51132105	51132106	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	51132106	CT	-	51132105	7	5	650	1	0	1	0	1	0	0	0	0	13869	564	20	0	840	0	SAV1	14	51132105	Frame_Shift_Del	DEL	CT	TCGA-HE-A5NK-01A-11D-A26P-10		51132105	56217435	84	39030											
MAP1A	4130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43817788	43817788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	43817788	A	G	43817788	3	3	650	1	0	0	0	0	1	0	0	0	9234	43	2	3	4119	3	MAP1A	15	43817788	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10		43817788	58713604	85	39031											
PRR14	78994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30666137	30666137	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	30666137	G	A	30666137	2	1	650	1	0	0	0	0	0	0	0	1	12596	1335	47	2		2	PRR14	16	30666137	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		30666137	59688616	86	39032											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31374006	31374006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	31374006	G	C	31374006	3	2	650	1	0	0	0	0	1	0	0	0	7896	1116	39	4	1337	4	ITGAX	16	31374006	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	707869	31374006	58980747	87	39033											
ALOX12B	242	ucsc.edu;bcgsc.ca	37	17	7990699	7990699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	7990699	G	C	7990699	3	2	650	1	0	0	0	0	1	0	0	0	537	1174	41	4	2103	4	ALOX12B	17	7990699	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		7990699	73204511	88	39034											
GHDC	84514	broad.mit.edu;bcgsc.ca	37	17	40344519	40344519	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	40344519	A	-	40344519	7	5	650	1	0	1	0	1	0	0	0	0	6376	246	9	0	1076	0	GHDC	17	40344519	Frame_Shift_Del	DEL	A	TCGA-HE-A5NK-01A-11D-A26P-10	32353820	40344519	40850691	89	39035											
AOC3	8639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41004649	41004649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	41004649	G	A	41004649	3	1	650	1	0	0	0	0	1	0	0	0	728	1377	48	2	1291	2	AOC3	17	41004649	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	660130	41004649	40190561	90	39036											
MMD	23531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	53485137	53485138	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	AG	53485138	-	AG	53485137	7	5	650	1	0	1	1	0	0	0	0	0	9650	1406	49	0	418	0	MMD	17	53485137	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	12480488	53485137	27710073	91	39037											
PPM1E	22843	hgsc.bcm.edu	37	17	56833490	56833490	+	Silent	SNP	G	G	A	rs59676153		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	56833490	G	A	56833490	2	1	650	1	0	0	0	0	0	0	0	1	12348	1020	36	2		2	PPM1E	17	56833490	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	3348353	56833490	24361720	92	39038											
CLTC	1213	ucsc.edu	37	17	57746160	57746160	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	57746160	C	T	57746160	2	4	650	1	0	0	0	0	0	0	0	1	3568	581	21	2		2	CLTC	17	57746160	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	912670	57746160	23449050	93	39039											
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61616010	61616010	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	61616010	C	G	61616010	2	3	650	1	0	0	0	0	0	0	0	1	8043	871	31	4		4	KCNH6	17	61616010	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	3869850	61616010	19579200	94	39040											
RNF213	57674	broad.mit.edu;bcgsc.ca	37	17	78350139	78350141	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	-	78350141	GAT	-	78350139	7	5	650	1	0	1	0	1	0	0	0	0	13490	933	33	0	13745	0	RNF213	17	78350139	In_Frame_Del	DEL	GAT	TCGA-HE-A5NK-01A-11D-A26P-10	16734129	78350139	2845071	95	39041											
ZNF236	7776	hgsc.bcm.edu;bcgsc.ca	37	18	74680294	74680294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	74680294	G	T	74680294	3	4	650	1	0	0	0	0	1	0	0	0	17801	1285	45	4	5659	4	ZNF236	18	74680294	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		74680294	3396954	96	39042											
DOT1L	84444	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	2210830	2210830	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	2210830	C	T	2210830	4	4	650	1	0	0	0	0	0	1	0	0	4711	827	29	2	1381	2	DOT1L	19	2210830	Nonsense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		2210830	56918153	97	39043											
TSPAN16	26526	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11408999	11408999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	11408999	G	A	11408999	3	1	650	1	0	0	0	0	1	0	0	0	16652	942	33	2	257	2	TSPAN16	19	11408999	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	9198169	11408999	47719984	98	39044											
ZNF653	115950	broad.mit.edu	37	19	11594521	11594521	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	11594521	G	A	11594521	2	1	650	1	0	0	0	0	0	0	0	1	18078	1194	42	2		2	ZNF653	19	11594521	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	185522	11594521	47534462	99	39045											
HAPLN4	404037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19371725	19371725	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	19371725	G	A	19371725	2	1	650	1	0	0	0	0	0	0	0	1	6964	1219	43	2		2	HAPLN4	19	19371725	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	7777204	19371725	39757258	100	39046											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35500151	35500151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	35500151	A	C	35500151	3	2	650	1	0	0	0	0	1	0	0	0	6754	333	12	5	143	5	GRAMD1A	19	35500151	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	16128426	35500151	23628832	101	39047											
DHX34	9704	ucsc.edu;bcgsc.ca	37	19	47858386	47858386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	47858386	C	T	47858386	3	4	650	1	0	0	0	0	1	0	0	0	4509	759	27	1	802	1	DHX34	19	47858386	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	12358235	47858386	11270597	102	39048											
CGB	1082	broad.mit.edu	37	19	49526376	49526377	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	49526377	-	T	49526376	7	5	650	1	0	1	1	0	0	0	0	0	3298	971	34	0	236	0	CGB	19	49526376	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	1667990	49526376	9602607	103	39049											
ZNF418	147686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58438722	58438722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	58438722	T	A	58438722	3	1	650	1	0	0	0	0	1	0	0	0	17907	1464	51	5	1207	5	ZNF418	19	58438722	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	8912346	58438722	690261	104	39050											
KIF16B	55614	broad.mit.edu	37	20	16359622	16359622	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	16359622	G	A	16359622	2	1	650	1	0	0	0	0	0	0	0	1	8285	991	35	2		2	KIF16B	20	16359622	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		16359622	46665898	105	39051											
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23546696	23546696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	23546696	T	G	23546696	3	3	650	1	0	0	0	0	1	0	0	0	3982	1551	54	5	182	5	CST9L	20	23546696	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	7187074	23546696	39478824	106	39052											
SLC32A1	140679	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37356957	37356957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	37356957	T	C	37356957	3	2	650	1	0	0	0	0	1	0	0	0	14578	1783	62	3	1259	3	SLC32A1	20	37356957	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	13810261	37356957	25668563	107	39053											
DHX35	60625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37653978	37653978	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	37653978	C	T	37653978	4	4	650	1	0	0	0	0	0	1	0	0	4510	827	29	2	1847	2	DHX35	20	37653978	Nonsense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	297021	37653978	25371542	108	39054											
SLC9A8	23315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	48431566	48431566	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	48431566	T	C	48431566	2	2	650	1	0	0	0	0	0	0	0	1	14733	1461	51	3		3	SLC9A8	20	48431566	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	10777588	48431566	14593954	109	39055											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26422672	26422672	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	26422672	C	T	26422672	2	4	650	1	0	0	0	0	0	0	0	1	10073	581	21	2		2	MYO18B	22	26422672	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		26422672	24881894	110	39056											
NEFH	4744	bcgsc.ca	37	22	29885429	29885429	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	C	29885429	T	C	29885429	2	2	650	1	0	0	0	0	0	0	0	1	10321	1538	54	3		3	NEFH	22	29885429	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	3462757	29885429	21419137	111	39057			1	83		3	3	194	N	T_G_-	2.782693e-07
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	29885562	G	A	29885562	3	1	650	1	0	0	0	0	1	0	0	0	10321	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	133	29885562	21419004	112	39058			1	83		3	3	194	N	T_G_-	2.782693e-07
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	AGGAAG	29885623	-	AGGAAG	29885622	7	5	650	1	0	1	1	0	0	0	0	0	10321	247	9	0	2007	0	NEFH	22	29885622	In_Frame_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	60	29885622	21418944	113	39059			1	83		3	3	194	N	T_G_-	2.782693e-07
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38483172	38483172	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	38483172	G	T	38483172	2	4	650	1	0	0	0	0	0	0	0	1	1303	1219	43	4		4	BAIAP2L2	22	38483172	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	8597550	38483172	12821394	114	39060											
GRAP2	9402	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40367067	40367067	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	40367067	C	T	40367067	2	4	650	1	0	0	0	0	0	0	0	1	6761	547	19	1		1	GRAP2	22	40367067	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	1883895	40367067	10937499	115	39061											
SMC1B	27127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45785629	45785630	+	Missense_Mutation	DNP	GC	GC	CT	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	CT	45785630	GC	CT	45785629	3	2	650	1	0	0	0	0	1	0	0	0	14795	971	34	4	2077	4	SMC1B	22	45785629	Missense_Mutation	DNP	GC	TCGA-HE-A5NK-01A-11D-A26P-10	5418562	45785629	5518937	116	39062											
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	51159826	51159826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	51159826	G	A	51159826	3	1	650	1	0	0	0	0	1	0	0	0	14279	1059	37	1	3699	1	SHANK3	22	51159826	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	5374197	51159826	144740	117	39063											
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50658965	50658965	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	T	50658965	C	T	50658965	2	4	650	1	0	0	0	0	0	0	0	1	1458	535	19	1		1	BMP15	23	50658965	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		50658965	104611595	118	39064											
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	77913359	77913359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	A	77913359	G	A	77913359	3	1	650	1	0	0	0	0	1	0	0	0	17603	1261	44	2	872	2	ZCCHC5	23	77913359	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	27254394	77913359	77357201	119	39065											
SRPX2	27286	broad.mit.edu	37	X	99919925	99919925	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	G	99919925	T	G	99919925	3	3	650	1	0	0	0	0	1	0	0	0	15177	1693	59	5	524	5	SRPX2	23	99919925	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	22006566	99919925	55350635	120	39066											
PRAMEF12	390999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12837407	12837407	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	12837407	A	T	12837407	3	4	651	1	0	0	0	0	1	0	0	0	12438	304	11	5	1127	5	PRAMEF12	1	12837407	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		12837407	236413214	1	39067											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16257911	16257911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	16257911	G	A	16257911	3	1	651	1	0	0	0	0	1	0	0	0	15050	1290	45	2	5218	2	SPEN	1	16257911	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	3420504	16257911	232992710	2	39068											
TAL1	6886	broad.mit.edu	37	1	47685614	47685614	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	G	47685614	C	G	47685614	3	3	651	1	0	0	0	0	1	0	0	0	15553	680	24	4	225	4	TAL1	1	47685614	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	31427703	47685614	201565007	3	39069											
ABCA4	24	broad.mit.edu	37	1	94486858	94486858	+	Silent	SNP	A	A	G	rs61750561	alternate_allele	TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	G	94486858	A	G	94486858	2	3	651	1	0	0	0	0	0	0	0	1	34	224	8	3		3	ABCA4	1	94486858	Silent	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	46801244	94486858	154763763	4	39070											
NBPF16	728936	broad.mit.edu;bcgsc.ca	37	1	148594427	148594427	+	Missense_Mutation	SNP	G	G	C	rs150964009	alternate_allele	TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	148594427	G	C	148594427	3	2	651	1	0	0	0	0	1	0	0	0	10203	962	34	4	1858	4	NBPF16	1	148594427	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	54107569	148594427	100656194	5	39071											
CADM3	57863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159170698	159170698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	159170698	G	T	159170698	4	4	651	1	0	0	0	0	0	1	0	0	2570	1175	41	4	1323	4	CADM3	1	159170698	Nonsense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	10576271	159170698	90079923	6	39072											
EPHX1	2052	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226030105	226030105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	226030105	T	C	226030105	3	2	651	1	0	0	0	0	1	0	0	0	5181	1522	53	3	992	3	EPHX1	1	226030105	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	66859407	226030105	23220516	7	39073											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235872510	235872510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	235872510	G	A	235872510	3	1	651	1	0	0	0	0	1	0	0	0	9135	1057	37	1	1421	1	LYST	1	235872510	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	9842405	235872510	13378111	8	39074											
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24929447	24929447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	24929447	G	A	24929447	3	1	651	1	0	0	0	0	1	0	0	0	10235	1348	47	2	1142	2	NCOA1	2	24929447	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		24929447	218269926	9	39075											
LRPPRC	10128	broad.mit.edu;bcgsc.ca	37	2	44203320	44203320	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	44203320	T	A	44203320	2	1	651	1	0	0	0	0	0	0	0	1	8972	1567	55	5		5	LRPPRC	2	44203320	Silent	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	19273873	44203320	198996053	10	39076											
TTL	150465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	113260589	113260589	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	113260589	A	-	113260589	7	5	651	1	0	1	0	1	0	0	0	0	16733	131	5	0	724	0	TTL	2	113260589	Frame_Shift_Del	DEL	A	TCGA-HE-A5NL-01A-11D-A26P-10	69057269	113260589	129938784	11	39077											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	171705820	171705820	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	171705820	A	-	171705820	7	5	651	1	0	1	0	1	0	0	0	0	6186	217	8	0	1227	0	GAD1	2	171705820	Frame_Shift_Del	DEL	A	TCGA-HE-A5NL-01A-11D-A26P-10	58445231	171705820	71493553	12	39078											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216274676	216274676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	216274676	G	T	216274676	3	4	651	1	0	0	0	0	1	0	0	0	5969	1310	46	4	5462	4	FN1	2	216274676	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	44568856	216274676	26924697	13	39079											
PDCD6IP	10015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33840351	33840351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	33840351	A	C	33840351	3	2	651	1	0	0	0	0	1	0	0	0	11631	304	11	5	133	5	PDCD6IP	3	33840351	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		33840351	164182079	14	39080											
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56766301	56766301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	56766301	C	A	56766301	3	1	651	1	0	0	0	0	1	0	0	0	904	739	26	4	395	4	ARHGEF3	3	56766301	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	22925950	56766301	141256129	15	39081											
MED12L	116931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	150877786	150877786	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	150877786	C	T	150877786	2	4	651	1	0	0	0	0	0	0	0	1	9436	726	26	2		2	MED12L	3	150877786	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	94111485	150877786	47144644	16	39082											
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1164263	1164263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	1164263	C	A	1164263	3	1	651	1	0	0	0	0	1	0	0	0	15095	912	32	4	265	4	SPON2	4	1164263	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		1164263	189990013	17	39083											
SEL1L3	23231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	25819805	25819806	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	25819806	-	T	25819805	7	5	651	1	0	1	1	0	0	0	0	0	14025	1377	48	0	1943	0	SEL1L3	4	25819805	Frame_Shift_Ins	INS	-	TCGA-HE-A5NL-01A-11D-A26P-10	24655542	25819805	165334471	18	39084											
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39435931	39435931	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	39435931	G	T	39435931	2	4	651	1	0	0	0	0	0	0	0	1	8339	1248	44	4		4	KLB	4	39435931	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	13616126	39435931	151718345	19	39085											
GABRG1	2565	hgsc.bcm.edu;bcgsc.ca	37	4	46043272	46043272	+	Splice_Site	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	46043272	C	T	46043272	5	4	651	1	0	0	0	0	0	0	1	0	6178	927	32	2	270	2	GABRG1	4	46043272	Splice_Site	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	6607341	46043272	145111004	20	39086											
G3BP2	9908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76570830	76570830	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	76570830	A	T	76570830	2	4	651	1	0	0	0	0	0	0	0	1	6149	175	7	5		5	G3BP2	4	76570830	Silent	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	30527558	76570830	114583446	21	39087											
ARHGAP24	83478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	86916564	86916564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	86916564	G	A	86916564	3	1	651	1	0	0	0	0	1	0	0	0	873	1232	43	2	1903	2	ARHGAP24	4	86916564	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	10345734	86916564	104237712	22	39088											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126239108	126239108	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	126239108	T	C	126239108	2	2	651	1	0	0	0	0	0	0	0	1	5699	1800	63	3		3	FAT4	4	126239108	Silent	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	39322544	126239108	64915168	23	39089											
HAND2	9464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	174450317	174450317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	174450317	A	T	174450317	3	4	651	1	0	0	0	0	1	0	0	0	6957	420	15	5	537	5	HAND2	4	174450317	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	48211209	174450317	16703959	24	39090											
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177056301	177056301	+	Missense_Mutation	SNP	G	G	A	rs140987021		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	177056301	G	A	177056301	3	1	651	1	0	0	0	0	1	0	0	0	17289	1058	37	1	1243	1	WDR17	4	177056301	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	2605984	177056301	14097975	25	39091											
CENPK	64105	broad.mit.edu;bcgsc.ca	37	5	64824334	64824341	+	Frame_Shift_Del	DEL	CCCAAGGT	CCCAAGGT	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	CCCAAGGT	CCCAAGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	64824341	CCCAAGGT	-	64824334	7	5	651	1	0	1	0	1	0	0	0	0	3237	739	26	0	279	0	CENPK	5	64824334	Frame_Shift_Del	DEL	CCCAAGGT	TCGA-HE-A5NL-01A-11D-A26P-10		64824334	116090926	26	39092											
RGMB	285704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	98115590	98115591	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	98115591	GG	-	98115590	7	5	651	1	0	1	0	1	0	0	0	0	13294	1000	35	0	576	0	RGMB	5	98115590	Frame_Shift_Del	DEL	GG	TCGA-HE-A5NL-01A-11D-A26P-10	33291256	98115590	82799670	27	39093											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139876316	139876316	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	G	139876316	A	G	139876316	2	3	651	1	0	0	0	0	0	0	0	1	628	40	2	3		3	ANKHD1	5	139876316	Silent	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	41760726	139876316	41038944	28	39094											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150921871	150921871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	150921871	G	T	150921871	3	4	651	1	0	0	0	0	1	0	0	0	5697	1368	48	4	4292	4	FAT2	5	150921871	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	11045555	150921871	29993389	29	39095											
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	154395501	154395501	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	154395501	G	A	154395501	2	1	651	1	0	0	0	0	0	0	0	1	8311	933	33	2		2	KIF4B	5	154395501	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	3473630	154395501	26519759	30	39096											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90577520	90577520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	90577520	G	T	90577520	3	4	651	1	0	0	0	0	1	0	0	0	2680	1029	36	4	4537	4	CASP8AP2	6	90577520	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		90577520	80537547	31	39097											
FBXO30	84085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	146126628	146126628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	146126628	C	T	146126628	3	4	651	1	0	0	0	0	1	0	0	0	5747	507	18	2	1331	2	FBXO30	6	146126628	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	55549108	146126628	24988439	32	39098											
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87037472	87037472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	87037472	C	T	87037472	3	4	651	1	0	0	0	0	1	0	0	0	43	623	22	2	716	2	ABCB4	7	87037472	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		87037472	72101191	33	39099											
SLC25A40	55972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	87466048	87466048	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	87466048	A	-	87466048	7	5	651	1	0	1	0	1	0	0	0	0	14518	246	9	0	123	0	SLC25A40	7	87466048	Frame_Shift_Del	DEL	A	TCGA-HE-A5NL-01A-11D-A26P-10	428576	87466048	71672615	34	39100											
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	97847037	97847037	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	97847037	C	T	97847037	2	4	651	1	0	0	0	0	0	0	0	1	15755	796	28	2		2	TECPR1	7	97847037	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	10380989	97847037	61291626	35	39101											
MEPCE	56257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100030705	100030705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	100030705	T	A	100030705	3	1	651	1	0	0	0	0	1	0	0	0	9484	1435	50	5	1841	5	MEPCE	7	100030705	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	2183668	100030705	59107958	36	39102											
ELP3	55140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28047190	28047190	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	28047190	G	C	28047190	3	2	651	1	0	0	0	0	1	0	0	0	5083	942	33	4	1650	4	ELP3	8	28047190	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		28047190	118316832	37	39103											
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	67064722	67064722	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	67064722	T	-	67064722	7	5	651	1	0	1	0	1	0	0	0	0	16541	1725	60	0	1126	0	TRIM55	8	67064722	Frame_Shift_Del	DEL	T	TCGA-HE-A5NL-01A-11D-A26P-10	39017532	67064722	79299300	38	39104											
CSMD3	114788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	113516202	113516202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	113516202	T	C	113516202	3	2	651	1	0	0	0	0	1	0	0	0	3948	1522	53	3	6391	3	CSMD3	8	113516202	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	46451480	113516202	32847820	39	39105	495	2									
CSMD3	114788	hgsc.bcm.edu;bcgsc.ca	37	8	113516207	113516207	+	Splice_Site	SNP	C	C	G	rs76670724	alternate_allele	TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	G	113516207	C	G	113516207	5	3	651	1	0	0	0	0	0	0	1	0	3948	579	20	4	6396	4	CSMD3	8	113516207	Splice_Site	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	5	113516207	32847815	40	39106	495	2									
ZNF79	7633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130206739	130206739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	130206739	T	C	130206739	3	2	651	1	0	0	0	0	1	0	0	0	18173	1464	51	3	778	3	ZNF79	9	130206739	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10		130206739	11006692	41	39107											
ACBD5	91452	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	27529275	27529275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	G	27529275	T	G	27529275	3	3	651	1	0	0	0	0	1	0	0	0	125	1792	62	5	1471	5	ACBD5	10	27529275	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10		27529275	108005472	42	39108											
ATRNL1	26033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	117075179	117075179	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	117075179	G	A	117075179	2	1	651	1	0	0	0	0	0	0	0	1	1207	933	33	2		2	ATRNL1	10	117075179	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	89545904	117075179	18459568	43	39109											
MKI67	4288	broad.mit.edu	37	10	129905112	129905113	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	129905113	TG	-	129905112	7	5	651	1	0	1	0	1	0	0	0	0	9605	1567	55	0	4790	0	MKI67	10	129905112	Frame_Shift_Del	DEL	TG	TCGA-HE-A5NL-01A-11D-A26P-10	12829933	129905112	5629635	44	39110											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1264092	1264092	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	1264092	C	T	1264092	2	4	651	1	0	0	0	0	0	0	0	1	9986	726	26	2		2	MUC5B	11	1264092	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		1264092	133742424	45	39111											
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	19890497	19890497	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	19890497	T	A	19890497	3	1	651	1	0	0	0	0	1	0	0	0	10191	1490	52	5	558	5	NAV2	11	19890497	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	18626405	19890497	115116019	46	39112											
GAS2	2620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	22759307	22759307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	22759307	G	A	22759307	3	1	651	1	0	0	0	0	1	0	0	0	6252	1319	46	2	480	2	GAS2	11	22759307	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	2868810	22759307	112247209	47	39113											
PAMR1	25891	broad.mit.edu;bcgsc.ca	37	11	35492269	35492269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	35492269	C	A	35492269	3	1	651	1	0	0	0	0	1	0	0	0	11420	478	17	4	1653	4	PAMR1	11	35492269	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	12732962	35492269	99514247	48	39114											
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57182446	57182446	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	57182446	G	C	57182446	3	2	651	1	0	0	0	0	1	0	0	0	14647	1020	36	4	592	4	SLC43A3	11	57182446	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	21690177	57182446	77824070	49	39115											
TUT1	64852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62343357	62343370	+	Frame_Shift_Del	DEL	GTAAAGGGATCGGC	GTAAAGGGATCGGC	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	GTAAAGGGATCGGC	GTAAAGGGATCGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	62343370	GTAAAGGGATCGGC	-	62343357	7	5	651	1	0	1	0	1	0	0	0	0	16792	1261	44	0	794	0	TUT1	11	62343357	Frame_Shift_Del	DEL	GTAAAGGGATCGGC	TCGA-HE-A5NL-01A-11D-A26P-10	5160911	62343357	72663159	50	39116											
PDE2A	5138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72292965	72292965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	72292965	C	T	72292965	3	4	651	1	0	0	0	0	1	0	0	0	11643	826	29	2	987	2	PDE2A	11	72292965	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	9949608	72292965	62713551	51	39117											
MYO7A	4647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76891503	76891503	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	76891503	G	A	76891503	2	1	651	1	0	0	0	0	0	0	0	1	10089	991	35	2		2	MYO7A	11	76891503	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	4598538	76891503	58115013	52	39118											
KBTBD3	143879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	105925034	105925034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	105925034	A	T	105925034	3	4	651	1	0	0	0	0	1	0	0	0	8001	40	2	5	1460	5	KBTBD3	11	105925034	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	29033531	105925034	29081482	53	39119											
ESAM	90952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	124623587	124623587	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	124623587	C	T	124623587	2	4	651	1	0	0	0	0	0	0	0	1	5249	697	25	2		2	ESAM	11	124623587	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	18698553	124623587	10382929	54	39120											
NTM	50863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	132180102	132180102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	132180102	T	C	132180102	3	2	651	1	0	0	0	0	1	0	0	0	10706	1783	62	3	862	3	NTM	11	132180102	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	7556515	132180102	2826414	55	39121											
TCHP	84260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110341898	110341898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	110341898	A	T	110341898	3	4	651	1	0	0	0	0	1	0	0	0	15714	243	9	5	351	5	TCHP	12	110341898	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		110341898	23509997	56	39122											
EXOSC8	11340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	37583387	37583387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	G	37583387	A	G	37583387	3	3	651	1	0	0	0	0	1	0	0	0	5322	246	9	3	824	3	EXOSC8	13	37583387	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		37583387	77586491	57	39123											
TIMM9	26520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	58878635	58878635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	58878635	T	C	58878635	3	2	651	1	0	0	0	0	1	0	0	0	15928	1580	55	3	252	3	TIMM9	14	58878635	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10		58878635	48470905	58	39124											
WDR72	256764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	53815462	53815462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	G	53815462	A	G	53815462	3	3	651	1	0	0	0	0	1	0	0	0	17334	159	6	3	110	3	WDR72	15	53815462	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		53815462	48715930	59	39125											
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	63097959	63097959	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	63097959	T	A	63097959	3	1	651	1	0	0	0	0	1	0	0	0	15960	1696	59	5	6828	5	TLN2	15	63097959	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	9282497	63097959	39433433	60	39126											
MEGF11	84465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	66190397	66190397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	66190397	G	A	66190397	3	1	651	1	0	0	0	0	1	0	0	0	9468	1290	45	2	128	2	MEGF11	15	66190397	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	3092438	66190397	36340995	61	39127											
DNAH3	55567	bcgsc.ca	37	16	20976403	20976403	+	Missense_Mutation	SNP	G	G	A	rs143399673		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	20976403	G	A	20976403	3	1	651	1	0	0	0	0	1	0	0	0	4605	1057	37	1	3586	1	DNAH3	16	20976403	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		20976403	69378350	62	39128											
EEF2K	29904	ucsc.edu;bcgsc.ca	37	16	22291588	22291588	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	22291588	C	T	22291588	2	4	651	1	0	0	0	0	0	0	0	1	4932	755	27	1		1	EEF2K	16	22291588	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	1315185	22291588	68063165	63	39129											
IL21R	50615	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27459983	27459983	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	27459983	G	T	27459983	2	4	651	1	0	0	0	0	0	0	0	1	7678	1103	39	4		4	IL21R	16	27459983	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	5168395	27459983	62894770	64	39130											
POLR2C	5432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57503976	57503976	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	57503976	G	A	57503976	2	1	651	1	0	0	0	0	0	0	0	1	12223	1219	43	2		2	POLR2C	16	57503976	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	30043993	57503976	32850777	65	39131											
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87760467	87760467	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	87760467	C	T	87760467	2	4	651	1	0	0	0	0	0	0	0	1	8365	465	17	2		2	KLHDC4	16	87760467	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	30256491	87760467	2594286	66	39132											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1630178	1630178	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	G	1630178	C	G	1630178	3	3	651	1	0	0	0	0	1	0	0	0	17342	623	22	4	1989	4	WDR81	17	1630178	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		1630178	79565032	67	39133											
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	5312151	5312152	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	5312152	-	A	5312151	7	5	651	1	0	1	1	0	0	0	0	0	10778	1393	49	0	1518	0	NUP88	17	5312151	Frame_Shift_Ins	INS	-	TCGA-HE-A5NL-01A-11D-A26P-10	3681973	5312151	75883059	68	39134											
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42744034	42744034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	42744034	C	T	42744034	3	4	651	1	0	0	0	0	1	0	0	0	1853	478	17	2	773	2	C17orf104	17	42744034	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	37431883	42744034	38451176	69	39135											
SLC35B1	10237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47781478	47781478	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	47781478	T	A	47781478	2	1	651	1	0	0	0	0	0	0	0	1	14588	1451	51	5		5	SLC35B1	17	47781478	Silent	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	5037444	47781478	33413732	70	39136											
PRKAR1A	5573	broad.mit.edu;bcgsc.ca	37	17	66526491	66526491	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	66526491	G	A	66526491	2	1	651	1	0	0	0	0	0	0	0	1	12513	962	34	2		2	PRKAR1A	17	66526491	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	18745013	66526491	14668719	71	39137											
CD300A	11314	broad.mit.edu	37	17	72473598	72473598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	72473598	T	C	72473598	3	2	651	1	0	0	0	0	1	0	0	0	2998	1580	55	3	571	3	CD300A	17	72473598	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	5947107	72473598	8721612	72	39138											
ZACN	353174	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74076354	74076354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	74076354	G	T	74076354	3	4	651	1	0	0	0	0	1	0	0	0	17522	1223	43	4	411	4	ZACN	17	74076354	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	1602756	74076354	7118856	73	39139											
QRICH2	84074	bcgsc.ca	37	17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	74288508	T	A	74288508	3	1	651	1	0	0	0	0	1	0	0	0	12893	1435	50	5	3253	5	QRICH2	17	74288508	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	212154	74288508	6906702	74	39140											
RNF152	220441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	59483369	59483369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	59483369	G	C	59483369	3	2	651	1	0	0	0	0	1	0	0	0	13466	1087	38	4	287	4	RNF152	18	59483369	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		59483369	18593879	75	39141											
BTBD2	55643	broad.mit.edu	37	19	2015365	2015365	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	2015365	T	-	2015365	7	5	651	1	0	1	0	1	0	0	0	0	1545	1725	60	0	1275	0	BTBD2	19	2015365	Frame_Shift_Del	DEL	T	TCGA-HE-A5NL-01A-11D-A26P-10		2015365	57113618	76	39142											
ATP13A1	57130	broad.mit.edu;bcgsc.ca	37	19	19762514	19762515	+	Frame_Shift_Ins	INS	-	-	TGCAGGA	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	TGCAGGA	19762515	-	TGCAGGA	19762514	7	5	651	1	0	1	1	0	0	0	0	0	1123	796	28	0	1335	0	ATP13A1	19	19762514	Frame_Shift_Ins	INS	-	TCGA-HE-A5NL-01A-11D-A26P-10	17747149	19762514	39366469	77	39143											
PSG11	5680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43519496	43519496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	43519496	G	T	43519496	3	4	651	1	0	0	0	0	1	0	0	0	12664	1232	43	4	279	4	PSG11	19	43519496	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	23756982	43519496	15609487	78	39144											
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53612760	53612760	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	53612760	T	A	53612760	3	1	651	1	0	0	0	0	1	0	0	0	17904	1493	52	5	1133	5	ZNF415	19	53612760	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	10093264	53612760	5516223	79	39145											
SEL1L2	80343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13868446	13868446	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	13868446	G	T	13868446	2	4	651	1	0	0	0	0	0	0	0	1	14024	1219	43	4		4	SEL1L2	20	13868446	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		13868446	49157074	80	39146											
ZNF337	26152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25656225	25656225	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	25656225	A	T	25656225	3	4	651	1	0	0	0	0	1	0	0	0	17865	304	11	5	560	5	ZNF337	20	25656225	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	11787779	25656225	37369295	81	39147											
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33623074	33623074	+	Silent	SNP	A	A	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	33623074	A	C	33623074	2	2	651	1	0	0	0	0	0	0	0	1	16593	1	1	5		5	TRPC4AP	20	33623074	Silent	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	7966849	33623074	29402446	82	39148			1	84		2	2	26	N	C_A	7.348698e-05
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33623099	33623099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	33623099	C	A	33623099	3	1	651	1	0	0	0	0	1	0	0	0	16593	797	28	4	1563	4	TRPC4AP	20	33623099	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	25	33623099	29402421	83	39149			1	84		2	2	26	N	C_A	7.348698e-05
TP53TG5	27296	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44005903	44005903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	44005903	C	A	44005903	3	1	651	1	0	0	0	0	1	0	0	0	16403	681	24	4	681	4	TP53TG5	20	44005903	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	10382804	44005903	19019617	84	39150											
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56140806	56140806	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	56140806	C	A	56140806	2	1	651	1	0	0	0	0	0	0	0	1	11588	668	24	4		4	PCK1	20	56140806	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	12134903	56140806	6884714	85	39151											
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62366740	62366740	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	62366740	T	A	62366740	2	1	651	1	0	0	0	0	0	0	0	1	17686	1567	55	5		5	ZGPAT	20	62366740	Silent	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	6225934	62366740	658780	86	39152											
NEFH	4744	bcgsc.ca	37	22	29885458	29885458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	C	29885458	A	C	29885458	3	2	651	1	0	0	0	0	1	0	0	0	10321	246	9	5	1843	5	NEFH	22	29885458	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		29885458	21419108	87	39153											
LGALS2	3957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	37966307	37966307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	37966307	C	T	37966307	3	4	651	1	0	0	0	0	1	0	0	0	8749	739	26	2	40	2	LGALS2	22	37966307	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	8080849	37966307	13338259	88	39154											
PNPLA3	80339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	44333050	44333050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	44333050	G	A	44333050	3	1	651	1	0	0	0	0	1	0	0	0	12173	1203	42	2	899	2	PNPLA3	22	44333050	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	6366743	44333050	6971516	89	39155											
TLR7	51284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	12906681	12906681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	A	12906681	C	A	12906681	3	1	651	1	0	0	0	0	1	0	0	0	15968	506	18	4	3060	4	TLR7	23	12906681	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		12906681	142363879	90	39156											
FAM47A	158724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	34148836	34148836	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	T	34148836	C	T	34148836	2	4	651	1	0	0	0	0	0	0	0	1	5576	796	28	2		2	FAM47A	23	34148836	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	21242155	34148836	121121724	91	39157											
IL9R	3581	broad.mit.edu	37	X	155239822	155239824	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	-	155239824	CAA	-	155239822	7	5	651	1	0	1	0	1	0	0	0	0	7715	709	25	0	1348	0	IL9R	23	155239822	In_Frame_Del	DEL	CAA	TCGA-HE-A5NL-01A-11D-A26P-10	121090986	155239822	30738	92	39158											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32205741	32205741	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	G	32205741	T	G	32205741	3	3	652	1	0	0	0	0	1	0	0	0	1299	1838	64	5	2813	5	BAI2	1	32205741	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10		32205741	217044880	1	39159											
PMF1	11243	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	156209392	156209392	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	156209392	A	C	156209392	3	2	652	1	0	0	0	0	1	0	0	0	12140	317	11	5	636	5	PMF1	1	156209392	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	124003651	156209392	93041229	2	39160											
OR2T3	343173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248637175	248637175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	248637175	A	C	248637175	3	2	652	1	0	0	0	0	1	0	0	0	11030	188	7	5	526	5	OR2T3	1	248637175	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	92427783	248637175	613446	3	39161											
MPHOSPH10	10199	broad.mit.edu	37	2	71376396	71376396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	71376396	C	T	71376396	3	4	652	1	0	0	0	0	1	0	0	0	9732	478	17	2	1747	2	MPHOSPH10	2	71376396	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		71376396	171822977	4	39162											
WDR54	84058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74651108	74651108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	G	74651108	A	G	74651108	3	3	652	1	0	0	0	0	1	0	0	0	17318	202	7	3	551	3	WDR54	2	74651108	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	3274712	74651108	168548265	5	39163											
INO80D	54891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	206921631	206921631	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	206921631	G	A	206921631	2	1	652	1	0	0	0	0	0	0	0	1	7756	1164	41	2		2	INO80D	2	206921631	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	132270523	206921631	36277742	6	39164											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	212248449	212248449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	212248449	C	T	212248449	3	4	652	1	0	0	0	0	1	0	0	0	5211	652	23	1	112	1	ERBB4	2	212248449	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	5326818	212248449	30950924	7	39165											
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	241696843	C	A	241696843	3	1	652	1	0	0	0	0	1	0	0	0	8290	696	24	4		4	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	29448394	241696843	1502530	8	39166											
CCDC66	285331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56627039	56627039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	56627039	A	C	56627039	3	2	652	1	0	0	0	0	1	0	0	0	2840	69	3	5	1008	5	CCDC66	3	56627039	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10		56627039	141395391	9	39167											
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	140401754	140401754	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	140401754	G	A	140401754	2	1	652	1	0	0	0	0	0	0	0	1	16529	991	35	2		2	TRIM42	3	140401754	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	83774715	140401754	57620676	10	39168											
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	170013708	170013708	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	-	170013708	A	-	170013708	7	5	652	1	0	1	0	1	0	0	0	0	12524	246	9	0	1485	0	PRKCI	3	170013708	Frame_Shift_Del	DEL	A	TCGA-IA-A40U-01A-11D-A25F-10	29611954	170013708	28008722	11	39169											
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76532433	76532433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	76532433	G	A	76532433	3	1	652	1	0	0	0	0	1	0	0	0	3156	1029	36	2	1037	2	CDKL2	4	76532433	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		76532433	114621843	12	39170											
SYNPO2	171024	hgsc.bcm.edu;bcgsc.ca	37	4	119947961	119947961	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	119947961	A	C	119947961	3	2	652	1	0	0	0	0	1	0	0	0	15469	130	5	5	447	5	SYNPO2	4	119947961	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	43415528	119947961	71206315	13	39171	496	2									
SYNPO2	171024	hgsc.bcm.edu	37	4	119947965	119947967	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	-	119947967	AAG	-	119947965	7	5	652	1	0	1	0	1	0	0	0	0	15469	243	9	0	451	0	SYNPO2	4	119947965	In_Frame_Del	DEL	AAG	TCGA-IA-A40U-01A-11D-A25F-10	4	119947965	71206311	14	39172	496	2									
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126240999	126240999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	126240999	G	A	126240999	3	1	652	1	0	0	0	0	1	0	0	0	5699	942	33	2	3435	2	FAT4	4	126240999	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	6293034	126240999	64913277	15	39173											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7816984	7816984	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	7816984	C	T	7816984	2	4	652	1	0	0	0	0	0	0	0	1	294	639	23	1		1	ADCY2	5	7816984	Silent	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		7816984	173098276	16	39174											
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37307409	37307409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	G	37307409	A	G	37307409	3	3	652	1	0	0	0	0	1	0	0	0	10763	72	3	3	1326	3	NUP155	5	37307409	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	29490425	37307409	143607851	17	39175											
PAM	5066	hgsc.bcm.edu;broad.mit.edu	37	5	102237063	102237063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	102237063	G	A	102237063	3	1	652	1	0	0	0	0	1	0	0	0	11419	1058	37	1	224	1	PAM	5	102237063	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	64929654	102237063	78678197	18	39176											
RNF14	9604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141357939	141357939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	141357939	G	T	141357939	3	4	652	1	0	0	0	0	1	0	0	0	13456	1183	41	4	388	4	RNF14	5	141357939	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	39120876	141357939	39557321	19	39177											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	154278113	154278113	+	Missense_Mutation	SNP	C	C	T	rs144363013		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	154278113	C	T	154278113	3	4	652	1	0	0	0	0	1	0	0	0	6338	536	19	1	1318	1	GEMIN5	5	154278113	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	12920174	154278113	26637147	20	39178											
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35471606	35471606	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	35471606	G	C	35471606	3	2	652	1	0	0	0	0	1	0	0	0	16785	1116	39	4	512	4	TULP1	6	35471606	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		35471606	135643461	21	39179											
COL12A1	1303	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75884802	75884802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	75884802	C	T	75884802	3	4	652	1	0	0	0	0	1	0	0	0	3671	710	25	2	6745	2	COL12A1	6	75884802	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	40413196	75884802	95230265	22	39180											
CNKSR3	154043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	154732110	154732110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	154732110	T	C	154732110	3	2	652	1	0	0	0	0	1	0	0	0	3610	1812	63	3	442	3	CNKSR3	6	154732110	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10	78847308	154732110	16382957	23	39181											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116397543	116397543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	116397543	A	C	116397543	3	2	652	1	0	0	0	0	1	0	0	0	9492	101	4	5	1937	5	MET	7	116397543	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10		116397543	42741120	24	39182											
COPG2	26958	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	130337745	130337745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	130337745	G	C	130337745	3	2	652	1	0	0	0	0	1	0	0	0	3734	971	34	4	955	4	COPG2	7	130337745	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	13940202	130337745	28800918	25	39183											
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	8643536	8643536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	8643536	T	C	8643536	3	2	652	1	0	0	0	0	1	0	0	0	9528	1580	55	3	7	3	MFHAS1	8	8643536	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10		8643536	137720486	26	39184											
C9orf89	84270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95874554	95874555	+	Missense_Mutation	DNP	TG	TG	GT	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	GT	95874555	TG	GT	95874554	3	3	652	1	0	0	0	0	1	0	0	0	2505	1580	55	5	437	5	C9orf89	9	95874554	Missense_Mutation	DNP	TG	TCGA-IA-A40U-01A-11D-A25F-10		95874554	45338877	27	39185											
CCDC3	83643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13043327	13043327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	13043327	G	T	13043327	3	4	652	1	0	0	0	0	1	0	0	0	2806	962	34	4	580	4	CCDC3	10	13043327	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		13043327	122491420	28	39186											
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103789497	103789497	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	103789497	C	T	103789497	2	4	652	1	0	0	0	0	0	0	0	1	1618	465	17	2		2	C10orf76	10	103789497	Silent	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	90746170	103789497	31745250	29	39187											
PSD	5662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104173630	104173630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	104173630	C	A	104173630	3	1	652	1	0	0	0	0	1	0	0	0	12656	680	24	4	1677	4	PSD	10	104173630	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	384133	104173630	31361117	30	39188											
PSMA1	5682	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	14536021	14536021	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	14536021	C	A	14536021	4	1	652	1	0	0	0	0	0	1	0	0	12676	864	30	4	594	4	PSMA1	11	14536021	Nonsense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		14536021	120470495	31	39189											
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71944164	71944164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	71944164	G	T	71944164	3	4	652	1	0	0	0	0	1	0	0	0	7768	1261	44	4	2063	4	INPPL1	11	71944164	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	57408143	71944164	63062352	32	39190											
MMP27	64066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102563689	102563689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	G	102563689	T	G	102563689	3	3	652	1	0	0	0	0	1	0	0	0	9671	1435	50	5	272	5	MMP27	11	102563689	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10	30619525	102563689	32442827	33	39191											
PAFAH1B2	5049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117038364	117038364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	G	117038364	C	G	117038364	3	3	652	1	0	0	0	0	1	0	0	0	11392	816	29	4	657	4	PAFAH1B2	11	117038364	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	14474675	117038364	17968152	34	39192											
RECQL	5965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21623145	21623145	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	G	21623145	T	G	21623145	3	3	652	1	0	0	0	0	1	0	0	0	13214	1850	64	5	20	5	RECQL	12	21623145	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10		21623145	112228750	35	39193											
HOXC10	3226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54382989	54382989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	54382989	T	C	54382989	3	2	652	1	0	0	0	0	1	0	0	0	7316	1580	55	3	794	3	HOXC10	12	54382989	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10	32759844	54382989	79468906	36	39194											
NCKAP1L	3071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54905823	54905823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	54905823	C	A	54905823	3	1	652	1	0	0	0	0	1	0	0	0	10229	507	18	4	909	4	NCKAP1L	12	54905823	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	522834	54905823	78946072	37	39195											
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	59308047	59308047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	59308047	C	T	59308047	3	4	652	1	0	0	0	0	1	0	0	0	8953	579	20	2	3124	2	LRIG3	12	59308047	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	4402224	59308047	74543848	38	39196											
RBM19	9904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	114400219	114400220	+	Splice_Site	DNP	TC	TC	CT	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	CT	114400220	TC	CT	114400219	5	2	652	1	0	0	0	0	0	0	1	0	13134	1449	50	3	2937	3	RBM19	12	114400219	Splice_Site	DNP	TC	TCGA-IA-A40U-01A-11D-A25F-10	55092172	114400219	19451676	39	39197											
UBC	7316	ucsc.edu;bcgsc.ca	37	12	125397655	125397655	+	Silent	SNP	C	C	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	125397655	C	A	125397655	2	1	652	1	0	0	0	0	0	0	0	1	16854	581	21	4		4	UBC	12	125397655	Silent	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	10997436	125397655	8454240	40	39198											
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95670380	95670380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	95670380	G	A	95670380	3	1	652	1	0	0	0	0	1	0	0	0	3544	1174	41	2	1722	2	CLMN	14	95670380	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		95670380	11679160	41	39199											
CHRFAM7A	89832	bcgsc.ca	37	15	30665219	30665220	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	-	30665220	AT	-	30665219	7	5	652	1	0	1	0	1	0	0	0	0	3377	333	12	0	968	0	CHRFAM7A	15	30665219	Frame_Shift_Del	DEL	AT	TCGA-IA-A40U-01A-11D-A25F-10		30665219	71866173	42	39200											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75968209	75968209	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	75968209	G	C	75968209	3	2	652	1	0	0	0	0	1	0	0	0	3962	1165	41	4	321	4	CSPG4	15	75968209	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	45302990	75968209	26563183	43	39201											
RHCG	51458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90030138	90030138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	90030138	G	A	90030138	3	1	652	1	0	0	0	0	1	0	0	0	13339	1203	42	2	1212	2	RHCG	15	90030138	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	14061929	90030138	12501254	44	39202											
STUB1	10273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	732019	732019	+	Splice_Site	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	732019	G	T	732019	5	4	652	1	0	0	0	0	0	0	1	0	15347	1014	35	4	630	4	STUB1	16	732019	Splice_Site	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		732019	89622734	45	39203											
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74505165	74505165	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	C	74505165	A	C	74505165	3	2	652	1	0	0	0	0	1	0	0	0	6443	449	16	5	1532	5	GLG1	16	74505165	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	73773146	74505165	15849588	46	39204											
C16orf46	123775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81094972	81094972	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	81094972	G	A	81094972	4	1	652	1	0	0	0	0	0	1	0	0	1817	1328	46	2	237	2	C16orf46	16	81094972	Nonsense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	6589807	81094972	9259781	47	39205											
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3480482	3480482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	G	3480482	A	G	3480482	3	3	652	1	0	0	0	0	1	0	0	0	16607	333	12	3	494	3	TRPV1	17	3480482	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10		3480482	77714728	48	39206											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15968952	15968952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	15968952	G	T	15968952	3	4	652	1	0	0	0	0	1	0	0	0	10242	1299	45	4	2580	4	NCOR1	17	15968952	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	12488470	15968952	65226258	49	39207											
LRRC37A	9884	broad.mit.edu	37	17	44410017	44410018	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	44410018	-	T	44410017	7	5	652	1	0	1	1	0	0	0	0	0	8998	217	8	0	4842	0	LRRC37A	17	44410017	Frame_Shift_Ins	INS	-	TCGA-IA-A40U-01A-11D-A25F-10	28441065	44410017	36785193	50	39208											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76449535	76449535	+	Silent	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	76449535	G	T	76449535	2	4	652	1	0	0	0	0	0	0	0	1	4603	1277	45	4		4	DNAH17	17	76449535	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	32039518	76449535	4745675	51	39209											
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8314790	8314790	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	8314790	C	T	8314790	4	4	652	1	0	0	0	0	0	1	0	0	12819	644	23	1	2936	1	PTPRM	18	8314790	Nonsense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		8314790	69762458	52	39210											
PRKCSH	5589	bcgsc.ca	37	19	11546941	11546941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	11546941	G	T	11546941	3	4	652	1	0	0	0	0	1	0	0	0	12526	1319	46	4	5	4	PRKCSH	19	11546941	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		11546941	47582042	53	39211											
MAP4K1	11184	hgsc.bcm.edu;bcgsc.ca	37	19	39101749	39101755	+	Frame_Shift_Del	DEL	ATGAAGT	ATGAAGT	-	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	ATGAAGT	ATGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	-	39101755	ATGAAGT	-	39101749	7	5	652	1	0	1	0	1	0	0	0	0	9266	333	12	0	1899	0	MAP4K1	19	39101749	Frame_Shift_Del	DEL	ATGAAGT	TCGA-IA-A40U-01A-11D-A25F-10	27554808	39101749	20027234	54	39212											
KLK14	43847	broad.mit.edu	37	19	51584905	51584905	+	Silent	SNP	G	G	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	51584905	G	T	51584905	2	4	652	1	0	0	0	0	0	0	0	1	8409	1219	43	4		4	KLK14	19	51584905	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	12483156	51584905	7544078	55	39213											
MZF1	7593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59082699	59082699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	59082699	C	T	59082699	3	4	652	1	0	0	0	0	1	0	0	0	10115	478	17	2	2166	2	MZF1	19	59082699	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	7497794	59082699	46284	56	39214											
SALL4	57167	bcgsc.ca	37	20	50406632	50406632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	T	50406632	C	T	50406632	3	4	652	1	0	0	0	0	1	0	0	0	13826	797	28	2	783	2	SALL4	20	50406632	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		50406632	12618888	57	39215											
TAB1	10454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39814795	39814795	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	A	39814795	G	A	39814795	2	1	652	1	0	0	0	0	0	0	0	1	15507	1277	45	2		2	TAB1	22	39814795	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		39814795	11489771	58	39216											
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90048545	90048545	+	Silent	SNP	A	A	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	G	90048545	A	G	90048545	2	3	653	1	0	0	0	0	0	0	0	1	9029	40	2	3		3	LRRC8B	1	90048545	Silent	SNP	A	TCGA-IA-A40X-01A-11D-A25F-10		90048545	159202076	1	39217											
OTX1	5013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	63282730	63282730	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	63282730	T	A	63282730	3	1	653	1	0	0	0	0	1	0	0	0	11327	1696	59	5	354	5	OTX1	2	63282730	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		63282730	179916643	2	39218											
PNO1	56902	bcgsc.ca	37	2	68388842	68388842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	68388842	G	T	68388842	3	4	653	1	0	0	0	0	1	0	0	0	12168	1319	46	4	395	4	PNO1	2	68388842	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	5106112	68388842	174810531	3	39219											
KCNJ3	3760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	155555531	155555531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	C	155555531	T	C	155555531	3	2	653	1	0	0	0	0	1	0	0	0	8059	1580	55	3	246	3	KCNJ3	2	155555531	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10	87166689	155555531	87643842	4	39220											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179615958	179615958	+	Silent	SNP	C	C	T	rs145004106		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	179615958	C	T	179615958	2	4	653	1	0	0	0	0	0	0	0	1	16747	523	19	1		1	TTN	2	179615958	Silent	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10	24060427	179615958	63583415	5	39221											
SLC11A1	6556	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219249037	219249037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	219249037	C	A	219249037	3	1	653	1	0	0	0	0	1	0	0	0	14393	506	18	4	232	4	SLC11A1	2	219249037	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10	39633079	219249037	23950336	6	39222											
CRBN	51185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	3209472	3209472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	G	3209472	T	G	3209472	3	3	653	1	0	0	0	0	1	0	0	0	3853	1580	55	5	823	5	CRBN	3	3209472	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		3209472	194812958	7	39223											
ACVR2B	93	broad.mit.edu	37	3	38519723	38519723	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	38519723	G	A	38519723	2	1	653	1	0	0	0	0	0	0	0	1	224	1306	46	2		2	ACVR2B	3	38519723	Silent	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	35310251	38519723	159502707	8	39224											
KLHDC8B	200942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49212303	49212303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	49212303	G	A	49212303	3	1	653	1	0	0	0	0	1	0	0	0	8370	1145	40	1	680	1	KLHDC8B	3	49212303	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	10692580	49212303	148810127	9	39225											
EPHA6	285220	broad.mit.edu	37	3	96533514	96533514	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	-	96533514	A	-	96533514	7	5	653	1	0	1	0	1	0	0	0	0	5173	188	7	0	49	0	EPHA6	3	96533514	Frame_Shift_Del	DEL	A	TCGA-IA-A40X-01A-11D-A25F-10	47321211	96533514	101488916	10	39226											
CHRD	8646	bcgsc.ca	37	3	184106751	184106751	+	Missense_Mutation	SNP	G	G	A	rs200027250		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	184106751	G	A	184106751	3	1	653	1	0	0	0	0	1	0	0	0	3374	1058	37	1	2866	1	CHRD	3	184106751	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	87573237	184106751	13915679	11	39227											
MAML3	55534	hgsc.bcm.edu	37	4	140811102	140811102	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	140811102	C	T	140811102	2	4	653	1	0	0	0	0	0	0	0	1	9214	796	28	2		2	MAML3	4	140811102	Silent	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		140811102	50343174	12	39228	497	2									
MAML3	55534	hgsc.bcm.edu	37	4	140811104	140811104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	140811104	G	T	140811104	3	4	653	1	0	0	0	0	1	0	0	0	9214	1328	46	4	1938	4	MAML3	4	140811104	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	2	140811104	50343172	13	39229	497	2									
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1219218	1219218	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	1219218	C	T	1219218	2	4	653	1	0	0	0	0	0	0	0	1	14695	813	29	2		2	SLC6A19	5	1219218	Silent	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		1219218	179696042	14	39230											
LYRM4	57128	hgsc.bcm.edu	37	6	5260906	5260906	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	5260906	T	A	5260906	4	1	653	1	0	0	0	0	0	1	0	0	9128	1821	63	5	504	5	LYRM4	6	5260906	Nonsense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		5260906	165854161	15	39231											
ABCF1	23	broad.mit.edu	37	6	30550906	30550906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	30550906	G	A	30550906	3	1	653	1	0	0	0	0	1	0	0	0	65	1145	40	1	894	1	ABCF1	6	30550906	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	25290000	30550906	140564161	16	39232											
TNRC18	84629	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5396874	5396874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	5396874	G	A	5396874	4	1	653	1	0	0	0	0	0	1	0	0	16351	1357	47	2	4099	2	TNRC18	7	5396874	Nonsense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		5396874	153741789	17	39233											
C7orf31	136895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	25182389	25182389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	G	25182389	T	G	25182389	3	3	653	1	0	0	0	0	1	0	0	0	2389	1722	60	5	1055	5	C7orf31	7	25182389	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10	19785515	25182389	133956274	18	39234											
NOM1	64434	hgsc.bcm.edu	37	7	156742605	156742605	+	Silent	SNP	A	A	G	rs149616380		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	G	156742605	A	G	156742605	2	3	653	1	0	0	0	0	0	0	0	1	10537	69	3	3		3	NOM1	7	156742605	Silent	SNP	A	TCGA-IA-A40X-01A-11D-A25F-10	131560216	156742605	2396058	19	39235											
C9orf153	389766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88844472	88844472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	88844472	G	A	88844472	3	1	653	1	0	0	0	0	1	0	0	0	2466	1203	42	2	270	2	C9orf153	9	88844472	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		88844472	52368959	20	39236											
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	67726425	67726425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	67726425	C	T	67726425	3	4	653	1	0	0	0	0	1	0	0	0	4016	710	25	2	350	2	CTNNA3	10	67726425	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		67726425	67808322	21	39237											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3744474	3744474	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	3744474	T	A	3744474	3	1	653	1	0	0	0	0	1	0	0	0	10780	1609	56	5	3436	5	NUP98	11	3744474	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		3744474	131262042	22	39238											
MTMR2	8898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	95568462	95568462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	95568462	C	T	95568462	3	4	653	1	0	0	0	0	1	0	0	0	9951	478	17	2	11	2	MTMR2	11	95568462	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10	91823988	95568462	39438054	23	39239											
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	3765545	3765545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	3765545	G	T	3765545	3	4	653	1	0	0	0	0	1	0	0	0	4939	1299	45	4	1645	4	EFCAB4B	12	3765545	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		3765545	130086350	24	39240											
GPR133	283383	hgsc.bcm.edu	37	12	131476916	131476917	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	AC	131476917	-	AC	131476916	7	5	653	1	0	1	1	0	0	0	0	0	6650	933	33	0	975	0	GPR133	12	131476916	Frame_Shift_Ins	INS	-	TCGA-IA-A40X-01A-11D-A25F-10	127711371	131476916	2374979	25	39241											
HECTD1	25831	broad.mit.edu	37	14	31604103	31604103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	31604103	C	T	31604103	3	4	653	1	0	0	0	0	1	0	0	0	7046	826	29	2	4367	2	HECTD1	14	31604103	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		31604103	75745437	26	39242											
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27445763	27445763	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	G	27445763	C	G	27445763	3	3	653	1	0	0	0	0	1	0	0	0	7678	681	24	4	151	4	IL21R	16	27445763	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		27445763	62908990	27	39243											
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27459874	27459874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	C	27459874	T	C	27459874	3	2	653	1	0	0	0	0	1	0	0	0	7678	1783	62	3	917	3	IL21R	16	27459874	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10	14111	27459874	62894879	28	39244											
TRIM37	4591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57134407	57134407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	C	57134407	T	C	57134407	3	2	653	1	0	0	0	0	1	0	0	0	16523	1406	49	3	1922	3	TRIM37	17	57134407	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		57134407	24060803	29	39245											
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	G	8527467	T	G	8527467	5	3	653	1	0	0	0	0	0	0	1	0	7278	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		8527467	50601516	30	39246											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	30936011	30936011	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	C	30936011	G	C	30936011	3	2	653	1	0	0	0	0	1	0	0	0	17986	933	33	4	1544	4	ZNF536	19	30936011	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	22408544	30936011	28192972	31	39247											
CEACAM8	1088	broad.mit.edu	37	19	43098028	43098028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	43098028	G	A	43098028	3	1	653	1	0	0	0	0	1	0	0	0	3200	1116	39	1	976	1	CEACAM8	19	43098028	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	12162017	43098028	16030955	32	39248											
KCNN4	3783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44278354	44278354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	44278354	C	T	44278354	3	4	653	1	0	0	0	0	1	0	0	0	8088	536	19	1	634	1	KCNN4	19	44278354	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10	1180326	44278354	14850629	33	39249											
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33874582	33874582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	C	33874582	G	C	33874582	3	2	653	1	0	0	0	0	1	0	0	0	5642	942	33	4	247	4	FAM83C	20	33874582	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		33874582	29150938	34	39250											
TMPRSS3	64699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43802332	43802332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	C	43802332	G	C	43802332	3	2	653	1	0	0	0	0	1	0	0	0	16260	1232	43	4	673	4	TMPRSS3	21	43802332	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		43802332	4327563	35	39251											
MMP11	4320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24125618	24125618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	24125618	G	T	24125618	3	4	653	1	0	0	0	0	1	0	0	0	9657	1116	39	4	1384	4	MMP11	22	24125618	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		24125618	27178948	36	39252											
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	A	29885562	G	A	29885562	3	1	653	1	0	0	0	0	1	0	0	0	10321	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	5759944	29885562	21419004	37	39253											
VCX	26609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	7811790	7811790	+	Silent	SNP	C	C	T	rs200229312		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	T	7811790	C	T	7811790	2	4	653	1	0	0	0	0	0	0	0	1	17154	767	27	1		1	VCX	23	7811790	Silent	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		7811790	147458770	38	39254											
GAB3	139716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153908429	153908429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	G	153908429	A	G	153908429	3	3	653	1	0	0	0	0	1	0	0	0	6157	333	12	3	144	3	GAB3	23	153908429	Missense_Mutation	SNP	A	TCGA-IA-A40X-01A-11D-A25F-10	146096639	153908429	1362131	39	39255											
TAS1R2	80834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19181215	19181215	+	Missense_Mutation	SNP	G	G	A	rs79635934		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	19181215	G	A	19181215	3	1	654	1	0	0	0	0	1	0	0	0	15575	1145	40	1	1786	1	TAS1R2	1	19181215	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		19181215	230069406	1	39256											
VCAM1	7412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	101198018	101198018	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	101198018	C	G	101198018	3	3	654	1	0	0	0	0	1	0	0	0	17149	680	24	4	1596	4	VCAM1	1	101198018	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	82016803	101198018	148052603	2	39257											
CLCC1	23155	broad.mit.edu	37	1	109477463	109477464	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	109477464	-	T	109477463	7	5	654	1	0	1	1	0	0	0	0	0	3462	796	28	0	174	0	CLCC1	1	109477463	Frame_Shift_Ins	INS	-	TCGA-IA-A40Y-01A-11D-A25F-10	8279445	109477463	139773158	3	39258											
GON4L	54856	ucsc.edu	37	1	155726782	155726782	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	155726782	C	T	155726782	2	4	654	1	0	0	0	0	0	0	0	1	6579	854	30	2		2	GON4L	1	155726782	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	46249319	155726782	93523839	4	39259											
TTC24	164118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156552861	156552861	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	156552861	G	C	156552861	3	2	654	1	0	0	0	0	1	0	0	0	16704	1203	42	4	948	4	TTC24	1	156552861	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	826079	156552861	92697760	5	39260											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158596772	158596772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	158596772	T	C	158596772	3	2	654	1	0	0	0	0	1	0	0	0	15128	1841	64	3	1617	3	SPTA1	1	158596772	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	2043911	158596772	90653849	6	39261											
OLFML2B	25903	broad.mit.edu;bcgsc.ca	37	1	161989778	161989778	+	Silent	SNP	C	C	G	rs138821383	alternate_allele	TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	161989778	C	G	161989778	2	3	654	1	0	0	0	0	0	0	0	1	10865	639	23	4		4	OLFML2B	1	161989778	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	3393006	161989778	87260843	7	39262											
HHIPL2	79802	broad.mit.edu;bcgsc.ca	37	1	222715413	222715413	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	222715413	G	A	222715413	2	1	654	1	0	0	0	0	0	0	0	1	7101	1281	45	2		2	HHIPL2	1	222715413	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	60725635	222715413	26535208	8	39263											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237993878	237993878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	237993878	C	T	237993878	3	4	654	1	0	0	0	0	1	0	0	0	13782	739	26	2	15114	2	RYR2	1	237993878	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	15278465	237993878	11256743	9	39264											
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	240072456	240072456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	240072456	C	T	240072456	3	4	654	1	0	0	0	0	1	0	0	0	3380	768	27	1	1707	1	CHRM3	1	240072456	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	2078578	240072456	9178165	10	39265											
OR2L3	391192	broad.mit.edu	37	1	248224862	248224862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	248224862	C	A	248224862	3	1	654	1	0	0	0	0	1	0	0	0	11015	477	17	4	881	4	OR2L3	1	248224862	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	8152406	248224862	1025759	11	39266											
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17699184	17699184	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	17699184	T	G	17699184	3	3	654	1	0	0	0	0	1	0	0	0	13000	1406	49	5	2992	5	RAD51AP2	2	17699184	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10		17699184	225500189	12	39267											
DNMT3A	1788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25458669	25458669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	25458669	G	A	25458669	3	1	654	1	0	0	0	0	1	0	0	0	4678	1145	40	1	242	1	DNMT3A	2	25458669	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	7759485	25458669	217740704	13	39268											
C2orf70	339778	broad.mit.edu	37	2	26785532	26785532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	26785532	G	T	26785532	3	4	654	1	0	0	0	0	1	0	0	0	2192	1145	40	4	54	4	C2orf70	2	26785532	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	1326863	26785532	216413841	14	39269											
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37430124	37430124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	37430124	T	A	37430124	3	1	654	1	0	0	0	0	1	0	0	0	3206	1493	52	5	264	5	CEBPZ	2	37430124	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	10644592	37430124	205769249	15	39270											
PREPL	9581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	44566372	44566372	+	Nonsense_Mutation	SNP	G	G	A	rs145356495		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	44566372	G	A	44566372	4	1	654	1	0	0	0	0	0	1	0	0	12485	1095	38	1	1336	1	PREPL	2	44566372	Nonsense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	7136248	44566372	198633001	16	39271											
PREPL	9581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44566451	44566451	+	Silent	SNP	A	A	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	44566451	A	G	44566451	2	3	654	1	0	0	0	0	0	0	0	1	12485	446	16	3		3	PREPL	2	44566451	Silent	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	79	44566451	198632922	17	39272											
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55561724	55561724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	55561724	T	G	55561724	3	3	654	1	0	0	0	0	1	0	0	0	2865	1792	62	5	3454	5	CCDC88A	2	55561724	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	10995273	55561724	187637649	18	39273											
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	149247732	149247732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	149247732	G	A	149247732	3	1	654	1	0	0	0	0	1	0	0	0	9354	1175	41	2	3858	2	MBD5	2	149247732	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	93686008	149247732	93951641	19	39274											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179469564	179469564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	179469564	C	G	179469564	3	3	654	1	0	0	0	0	1	0	0	0	16747	825	29	4	53769	4	TTN	2	179469564	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	30221832	179469564	63729809	20	39275											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198265617	198265617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	198265617	G	A	198265617	3	1	654	1	0	0	0	0	1	0	0	0	14162	1319	46	2	1406	2	SF3B1	2	198265617	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	18796053	198265617	44933756	21	39276											
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	208725904	208725904	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	208725904	C	G	208725904	3	3	654	1	0	0	0	0	1	0	0	0	12089	797	28	4	260	4	PLEKHM3	2	208725904	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	10460287	208725904	34473469	22	39277											
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	234368474	234368474	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	234368474	C	T	234368474	2	4	654	1	0	0	0	0	0	0	0	1	4469	842	30	2		2	DGKD	2	234368474	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	25642570	234368474	8830899	23	39278											
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	10089633	10089633	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	10089633	G	A	10089633	2	1	654	1	0	0	0	0	0	0	0	1	5672	1074	38	1		1	FANCD2	3	10089633	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		10089633	187932797	24	39279											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38962716	38962716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	38962716	C	T	38962716	3	4	654	1	0	0	0	0	1	0	0	0	13926	768	27	1	4716	1	SCN11A	3	38962716	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	28873083	38962716	159059714	25	39280											
ZBTB38	253461	broad.mit.edu	37	3	141162716	141162716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	141162716	G	A	141162716	3	1	654	1	0	0	0	0	1	0	0	0	17551	1029	36	2	1488	2	ZBTB38	3	141162716	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	102200000	141162716	56859714	26	39281											
AADACL2	344752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	151475280	151475280	+	Silent	SNP	T	T	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	151475280	T	C	151475280	2	2	654	1	0	0	0	0	0	0	0	1	11	1461	51	3		3	AADACL2	3	151475280	Silent	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	10312564	151475280	46547150	27	39282											
SI	6476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	164767590	164767590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	164767590	G	A	164767590	3	1	654	1	0	0	0	0	1	0	0	0	14310	1116	39	1	4037	1	SI	3	164767590	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	13292310	164767590	33254840	28	39283											
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39439409	39439409	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	39439409	G	C	39439409	3	2	654	1	0	0	0	0	1	0	0	0	8339	1291	45	4	1409	4	KLB	4	39439409	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		39439409	151714867	29	39284											
FIP1L1	81608	broad.mit.edu	37	4	54244014	54244014	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	54244014	C	T	54244014	2	4	654	1	0	0	0	0	0	0	0	1	5903	639	23	1		1	FIP1L1	4	54244014	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	14804605	54244014	136910262	30	39285											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57889646	57889646	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	57889646	A	T	57889646	3	4	654	1	0	0	0	0	1	0	0	0	12222	72	3	5	2740	5	POLR2B	4	57889646	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	3645632	57889646	133264630	31	39286											
SMARCAD1	56916	broad.mit.edu	37	4	95174021	95174021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	95174021	G	A	95174021	3	1	654	1	0	0	0	0	1	0	0	0	14785	1175	41	2	1174	2	SMARCAD1	4	95174021	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	37284375	95174021	95980255	32	39287											
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156724870	156724870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	156724870	T	G	156724870	3	3	654	1	0	0	0	0	1	0	0	0	6902	1464	51	5	1550	5	GUCY1B3	4	156724870	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	61550849	156724870	34429406	33	39288											
SDHA	6389	ucsc.edu;bcgsc.ca	37	5	235358	235358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	235358	G	A	235358	3	1	654	1	0	0	0	0	1	0	0	0	13976	1290	45	2	1198	2	SDHA	5	235358	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		235358	180679902	34	39289											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	13771076	13771076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	13771076	G	T	13771076	3	4	654	1	0	0	0	0	1	0	0	0	4606	1165	41	4	4583	4	DNAH5	5	13771076	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	13535718	13771076	167144184	35	39290											
NNT	23530	broad.mit.edu	37	5	43677873	43677873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	43677873	G	T	43677873	3	4	654	1	0	0	0	0	1	0	0	0	10517	1339	47	4	2911	4	NNT	5	43677873	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	29906797	43677873	137237387	36	39291											
DDX4	54514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55110902	55110902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	55110902	G	A	55110902	3	1	654	1	0	0	0	0	1	0	0	0	4362	1145	40	1	2004	1	DDX4	5	55110902	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	11433029	55110902	125804358	37	39292											
RASA1	5921	bcgsc.ca	37	5	86645138	86645138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	86645138	A	T	86645138	3	4	654	1	0	0	0	0	1	0	0	0	13073	43	2	5	1252	5	RASA1	5	86645138	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	31534236	86645138	94270122	38	39293											
SLCO6A1	133482	broad.mit.edu	37	5	101811427	101811427	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	101811427	G	A	101811427	2	1	654	1	0	0	0	0	0	0	0	1	14745	1161	41	2		2	SLCO6A1	5	101811427	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	15166289	101811427	79103833	39	39294											
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140711698	140711698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	140711698	G	A	140711698	3	1	654	1	0	0	0	0	1	0	0	0	11557	1291	45	2	1449	2	PCDHGA1	5	140711698	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	38900271	140711698	40203562	40	39295											
CLINT1	9685	broad.mit.edu	37	5	157285975	157285975	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	157285975	A	T	157285975	3	4	654	1	0	0	0	0	1	0	0	0	3533	40	2	5	1921	5	CLINT1	5	157285975	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	16574277	157285975	23629285	41	39296											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180050943	180050943	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	180050943	T	A	180050943	4	1	654	1	0	0	0	0	0	1	0	0	5951	1850	64	5	2639	5	FLT4	5	180050943	Nonsense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	22764968	180050943	864317	42	39297											
HIST1H2AE	3012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26217223	26217223	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	26217223	A	T	26217223	3	4	654	1	0	0	0	0	1	0	0	0	7139	69	3	5	23	5	HIST1H2AE	6	26217223	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10		26217223	144897844	43	39298											
PKHD1	5314	broad.mit.edu;bcgsc.ca	37	6	51889790	51889790	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	51889790	G	A	51889790	2	1	654	1	0	0	0	0	0	0	0	1	11978	929	33	2		2	PKHD1	6	51889790	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	25672567	51889790	119225277	44	39299											
KIAA1009	22832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84911470	84911470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	84911470	C	T	84911470	3	4	654	1	0	0	0	0	1	0	0	0	8210	594	21	2	3588	2	KIAA1009	6	84911470	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	33021680	84911470	86203597	45	39300											
PM20D2	135293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	89859124	89859124	+	Silent	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	89859124	T	A	89859124	2	1	654	1	0	0	0	0	0	0	0	1	12136	1567	55	5		5	PM20D2	6	89859124	Silent	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	4947654	89859124	81255943	46	39301											
HDDC2	51020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	125619919	125619919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	125619919	C	T	125619919	3	4	654	1	0	0	0	0	1	0	0	0	7023	536	19	1	380	1	HDDC2	6	125619919	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	35760795	125619919	45495148	47	39302											
SNX10	29887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	26404687	26404687	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	26404687	C	G	26404687	3	3	654	1	0	0	0	0	1	0	0	0	14894	913	32	4	247	4	SNX10	7	26404687	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		26404687	132733976	48	39303											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31609394	31609394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	31609394	G	T	31609394	3	4	654	1	0	0	0	0	1	0	0	0	2766	1348	47	4	293	4	CCDC129	7	31609394	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	5204707	31609394	127529269	49	39304											
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117267708	117267708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	117267708	G	T	117267708	3	4	654	1	0	0	0	0	1	0	0	0	3296	942	33	4	3687	4	CFTR	7	117267708	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	85658314	117267708	41870955	50	39305											
RNF133	168433	broad.mit.edu	37	7	122338189	122338189	+	Missense_Mutation	SNP	G	G	A	rs137950690		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	122338189	G	A	122338189	3	1	654	1	0	0	0	0	1	0	0	0	13452	1145	40	1	350	1	RNF133	7	122338189	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	5070481	122338189	36800474	51	39306											
CCNE2	9134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95906316	95906316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	95906316	G	A	95906316	3	1	654	1	0	0	0	0	1	0	0	0	2923	1203	42	2	1208	2	CCNE2	8	95906316	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		95906316	50457706	52	39307											
DPYS	1807	broad.mit.edu	37	8	105478888	105478888	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	-	105478888	G	-	105478888	7	5	654	1	0	1	0	1	0	0	0	0	4748	1335	47	0	1334	0	DPYS	8	105478888	Frame_Shift_Del	DEL	G	TCGA-IA-A40Y-01A-11D-A25F-10	9572572	105478888	40885134	53	39308											
PARP10	84875	broad.mit.edu;bcgsc.ca	37	8	145059064	145059064	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	145059064	C	G	145059064	3	3	654	1	0	0	0	0	1	0	0	0	11462	623	22	4	1999	4	PARP10	8	145059064	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	39580176	145059064	1304958	54	39309											
IFT74	80173	hgsc.bcm.edu;bcgsc.ca	37	9	26962063	26962075	+	Frame_Shift_Del	DEL	GAAATATTCGAGT	GAAATATTCGAGT	-	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	GAAATATTCGAGT	GAAATATTCGAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	-	26962075	GAAATATTCGAGT	-	26962063	7	5	654	1	0	1	0	1	0	0	0	0	7570	1174	41	0	100	0	IFT74	9	26962063	Frame_Shift_Del	DEL	GAAATATTCGAGT	TCGA-IA-A40Y-01A-11D-A25F-10		26962063	114251368	55	39310											
ALAD	210	broad.mit.edu;bcgsc.ca	37	9	116153879	116153879	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	116153879	C	T	116153879	2	4	654	1	0	0	0	0	0	0	0	1	483	912	32	2		2	ALAD	9	116153879	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	89191816	116153879	25059552	56	39311											
PHF19	26147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123620475	123620475	+	Missense_Mutation	SNP	C	C	T	rs144405933		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	123620475	C	T	123620475	3	4	654	1	0	0	0	0	1	0	0	0	11836	768	27	1	256	1	PHF19	9	123620475	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	7466596	123620475	17592956	57	39312											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16955917	16955917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	16955917	G	A	16955917	3	1	654	1	0	0	0	0	1	0	0	0	4053	1115	39	1	3525	1	CUBN	10	16955917	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		16955917	118578830	58	39313											
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101578919	101578919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	101578919	C	A	101578919	3	1	654	1	0	0	0	0	1	0	0	0	53	478	17	4	2587	4	ABCC2	10	101578919	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	84623002	101578919	33955828	59	39314											
TRIM8	81603	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104404529	104404529	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	104404529	G	C	104404529	3	2	654	1	0	0	0	0	1	0	0	0	16560	1319	46	4	157	4	TRIM8	10	104404529	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	2825610	104404529	31130218	60	39315											
OR6A2	8590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6816105	6816105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	6816105	C	A	6816105	3	1	654	1	0	0	0	0	1	0	0	0	11193	507	18	4	152	4	OR6A2	11	6816105	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		6816105	128190411	61	39316											
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18738381	18738381	+	Silent	SNP	A	A	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	18738381	A	G	18738381	2	3	654	1	0	0	0	0	0	0	0	1	7607	214	8	3		3	IGSF22	11	18738381	Silent	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	11922276	18738381	116268135	62	39317											
OR4S1	256148	broad.mit.edu;bcgsc.ca	37	11	48328626	48328626	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	48328626	C	G	48328626	3	3	654	1	0	0	0	0	1	0	0	0	11089	903	32	4	854	4	OR4S1	11	48328626	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	29590245	48328626	86677890	63	39318											
OR4D9	390199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	59282746	59282746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	59282746	G	C	59282746	3	2	654	1	0	0	0	0	1	0	0	0	11066	1290	45	4	363	4	OR4D9	11	59282746	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	10954120	59282746	75723770	64	39319											
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74875111	74875111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	74875111	G	T	74875111	3	4	654	1	0	0	0	0	1	0	0	0	14740	971	34	4	261	4	SLCO2B1	11	74875111	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	15592365	74875111	60131405	65	39320											
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9251341	9251341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	9251341	G	C	9251341	3	2	654	1	0	0	0	0	1	0	0	0	4	962	34	4	2799	4	A2M	12	9251341	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		9251341	124600554	66	39321											
ABCD2	225	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	39973352	39973352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	39973352	C	T	39973352	3	4	654	1	0	0	0	0	1	0	0	0	61	536	19	1	372	1	ABCD2	12	39973352	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	30722011	39973352	93878543	67	39322											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49431988	49431988	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	49431988	C	G	49431988	3	3	654	1	0	0	0	0	1	0	0	0	9628	739	26	4	7546	4	MLL2	12	49431988	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	9458636	49431988	84419907	68	39323											
SHMT2	6472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57625677	57625677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	57625677	G	C	57625677	3	2	654	1	0	0	0	0	1	0	0	0	14299	1174	41	4	507	4	SHMT2	12	57625677	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	8193689	57625677	76226218	69	39324											
CYP27B1	1594	bcgsc.ca	37	12	58160674	58160674	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	58160674	C	G	58160674	3	3	654	1	0	0	0	0	1	0	0	0	4161	893	31	4	1411	4	CYP27B1	12	58160674	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	534997	58160674	75691221	70	39325											
TCP11L2	255394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	106717360	106717360	+	Missense_Mutation	SNP	C	C	G	rs138241328	alternate_allele	TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	106717360	C	G	106717360	3	3	654	1	0	0	0	0	1	0	0	0	15727	506	18	4	726	4	TCP11L2	12	106717360	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	48556686	106717360	27134535	71	39326											
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110234478	110234478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	110234478	G	A	110234478	3	1	654	1	0	0	0	0	1	0	0	0	16610	1145	40	1	1471	1	TRPV4	12	110234478	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	3517118	110234478	23617417	72	39327											
EP400	57634	broad.mit.edu	37	12	132522575	132522575	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	132522575	G	A	132522575	2	1	654	1	0	0	0	0	0	0	0	1	5151	1335	47	2		2	EP400	12	132522575	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	22288097	132522575	1329320	73	39328											
RCBTB1	55213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	50134123	50134123	+	Silent	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	50134123	G	C	50134123	2	2	654	1	0	0	0	0	0	0	0	1	13184	929	33	4		4	RCBTB1	13	50134123	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		50134123	65035755	74	39329											
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	101881861	101881861	+	Silent	SNP	T	T	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	101881861	T	C	101881861	2	2	654	1	0	0	0	0	0	0	0	1	10155	1770	62	3		3	NALCN	13	101881861	Silent	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	51747738	101881861	13288017	75	39330											
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31582629	31582629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	31582629	C	T	31582629	3	4	654	1	0	0	0	0	1	0	0	0	7046	565	20	2	1958	2	HECTD1	14	31582629	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		31582629	75766911	76	39331											
HEATR5A	25938	broad.mit.edu;bcgsc.ca	37	14	31763220	31763220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	31763220	A	G	31763220	3	3	654	1	0	0	0	0	1	0	0	0	7038	188	7	3	438	3	HEATR5A	14	31763220	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	180591	31763220	75586320	77	39332											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64519117	64519117	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	64519117	T	G	64519117	4	3	654	1	0	0	0	0	0	1	0	0	15458	1764	61	5	8672	5	SYNE2	14	64519117	Nonsense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	32755897	64519117	42830423	78	39333											
CKB	1152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	103988811	103988811	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	103988811	T	G	103988811	3	3	654	1	0	0	0	0	1	0	0	0	3448	1696	59	5	1153	5	CKB	14	103988811	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	39469694	103988811	3360729	79	39334											
SOLH	6650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	598994	598994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	598994	A	G	598994	3	3	654	1	0	0	0	0	1	0	0	0	14938	57	2	3	1457	3	SOLH	16	598994	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10		598994	89755759	80	39335											
TMEM219	124446	broad.mit.edu	37	16	29982731	29982731	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	29982731	G	A	29982731	2	1	654	1	0	0	0	0	0	0	0	1	16154	991	35	2		2	TMEM219	16	29982731	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	29383737	29982731	60372022	81	39336											
DNAH2	146754	broad.mit.edu;bcgsc.ca	37	17	7689597	7689597	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	7689597	C	T	7689597	2	4	654	1	0	0	0	0	0	0	0	1	4604	697	25	2		2	DNAH2	17	7689597	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		7689597	73505613	82	39337											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10300168	10300168	+	Silent	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	10300168	A	T	10300168	2	4	654	1	0	0	0	0	0	0	0	1	10048	407	15	5		5	MYH8	17	10300168	Silent	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	2610571	10300168	70895042	83	39338											
TMEM132E	124842	broad.mit.edu;bcgsc.ca	37	17	32956104	32956104	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	G	32956104	C	G	32956104	3	3	654	1	0	0	0	0	1	0	0	0	16060	759	27	4	967	4	TMEM132E	17	32956104	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	22655936	32956104	48239106	84	39339											
CLTC	1213	broad.mit.edu;bcgsc.ca	37	17	57728648	57728648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	57728648	G	T	57728648	3	4	654	1	0	0	0	0	1	0	0	0	3568	971	34	4	784	4	CLTC	17	57728648	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	24772544	57728648	23466562	85	39340											
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	65960510	65960510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	65960510	G	T	65960510	3	4	654	1	0	0	0	0	1	0	0	0	1497	1145	40	4	8928	4	BPTF	17	65960510	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	8231862	65960510	15234700	86	39341											
CBX4	8535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77807886	77807886	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	77807886	G	C	77807886	3	2	654	1	0	0	0	0	1	0	0	0	2722	1174	41	4	131	4	CBX4	17	77807886	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	11847376	77807886	3387324	87	39342											
AZI1	22994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79165083	79165083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	79165083	C	A	79165083	3	1	654	1	0	0	0	0	1	0	0	0	1240	739	26	4	587	4	AZI1	17	79165083	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	1357197	79165083	2030127	88	39343											
SERPINB3	6317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61322975	61322975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	61322975	G	C	61322975	3	2	654	1	0	0	0	0	1	0	0	0	14115	1165	41	4	87	4	SERPINB3	18	61322975	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		61322975	16754273	89	39344											
PGLYRP2	114770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15587343	15587343	+	Silent	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	15587343	G	T	15587343	2	4	654	1	0	0	0	0	0	0	0	1	11801	1335	47	4		4	PGLYRP2	19	15587343	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		15587343	43541640	90	39345											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35512474	35512474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	35512474	C	T	35512474	3	4	654	1	0	0	0	0	1	0	0	0	6754	893	31	1	1598	1	GRAMD1A	19	35512474	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	19925131	35512474	23616509	91	39346											
ZNF585B	92285	broad.mit.edu;bcgsc.ca	37	19	37680577	37680577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	37680577	C	T	37680577	3	4	654	1	0	0	0	0	1	0	0	0	18030	536	19	1	2039	1	ZNF585B	19	37680577	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	2168103	37680577	21448406	92	39347											
AHCY	191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32873337	32873337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	T	32873337	C	T	32873337	3	4	654	1	0	0	0	0	1	0	0	0	409	565	20	2	230	2	AHCY	20	32873337	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		32873337	30152183	93	39348											
ZBP1	81030	broad.mit.edu;bcgsc.ca	37	20	56195329	56195329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	56195329	G	A	56195329	3	1	654	1	0	0	0	0	1	0	0	0	17533	1116	39	1	1375	1	ZBP1	20	56195329	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	23321992	56195329	6830191	94	39349											
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31484747	31484747	+	Silent	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	C	31484747	G	C	31484747	2	2	654	1	0	0	0	0	0	0	0	1	14827	1219	43	4		4	SMTN	22	31484747	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		31484747	19819819	95	39350											
RAC2	5880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37627391	37627391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	37627391	T	A	37627391	3	1	654	1	0	0	0	0	1	0	0	0	12988	1464	51	5	258	5	RAC2	22	37627391	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	6142644	37627391	13677175	96	39351											
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118797595	118797595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	118797595	T	A	118797595	3	1	654	1	0	0	0	0	1	0	0	0	14081	1725	60	5	1167	5	SEPT6	23	118797595	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10		118797595	36472965	97	39352											
FATE1	89885	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150889896	150889896	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	A	150889896	G	A	150889896	2	1	654	1	0	0	0	0	0	0	0	1	5700	1277	45	2		2	FATE1	23	150889896	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	32092301	150889896	4380664	98	39353											
RSC1A1	6248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15987648	15987648	+	Silent	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	15987648	T	C	15987648	2	2	655	1	0	0	0	0	0	0	0	1	13711	1490	52	3		3	RSC1A1	1	15987648	Silent	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		15987648	233262973	1	39354											
NCDN	23154	hgsc.bcm.edu	37	1	36026434	36026444	+	Frame_Shift_Del	DEL	GATTTCCAGAA	GATTTCCAGAA	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	GATTTCCAGAA	GATTTCCAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	-	36026444	GATTTCCAGAA	-	36026434	7	5	655	1	0	1	0	1	0	0	0	0	10221	1174	41	0	692	0	NCDN	1	36026434	Frame_Shift_Del	DEL	GATTTCCAGAA	TCGA-IZ-8195-01A-31D-2396-08	20038786	36026434	213224187	2	39355											
PGM1	5236	hgsc.bcm.edu;broad.mit.edu	37	1	64117371	64117371	+	Missense_Mutation	SNP	G	G	A	rs201303497		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	64117371	G	A	64117371	3	1	655	1	0	0	0	0	1	0	0	0	11804	1087	38	1	1650	1	PGM1	1	64117371	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	28090937	64117371	185133250	3	39356											
AMY1A	276	hgsc.bcm.edu	37	1	104203011	104203011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	104203011	C	T	104203011	3	4	655	1	0	0	0	0	1	0	0	0	591	681	24	2	930	2	AMY1A	1	104203011	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	40085640	104203011	145047610	4	39357											
CELSR2	1952	hgsc.bcm.edu	37	1	109792762	109792762	+	Silent	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	109792762	T	C	109792762	2	2	655	1	0	0	0	0	0	0	0	1	3224	1722	60	3		3	CELSR2	1	109792762	Silent	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	5589751	109792762	139457859	5	39358											
CAPZA1	829	hgsc.bcm.edu	37	1	113202331	113202331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	113202331	G	A	113202331	3	1	655	1	0	0	0	0	1	0	0	0	2642	1145	40	1	541	1	CAPZA1	1	113202331	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	3409569	113202331	136048290	6	39359											
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180885553	180885553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	180885553	C	T	180885553	3	4	655	1	0	0	0	0	1	0	0	0	8255	913	32	2	320	2	KIAA1614	1	180885553	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	67683222	180885553	68365068	7	39360											
OBSCN	84033	hgsc.bcm.edu	37	1	228539078	228539078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	228539078	A	G	228539078	3	3	655	1	0	0	0	0	1	0	0	0	10819	304	11	3	18782	3	OBSCN	1	228539078	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	47653525	228539078	20711543	8	39361											
OR2M2	391194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248344277	248344277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	-	248344277	A	-	248344277	7	5	655	1	0	1	0	1	0	0	0	0	11017	439	16	0	992	0	OR2M2	1	248344277	Frame_Shift_Del	DEL	A	TCGA-IZ-8195-01A-31D-2396-08	19805199	248344277	906344	9	39362											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9528579	9528579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	9528579	T	C	9528579	3	2	655	1	0	0	0	0	1	0	0	0	1011	1754	61	3	2373	3	ASAP2	2	9528579	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		9528579	233670794	10	39363											
SLC4A1AP	22950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27888159	27888159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	27888159	A	G	27888159	3	3	655	1	0	0	0	0	1	0	0	0	14666	101	4	3	1024	3	SLC4A1AP	2	27888159	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	18359580	27888159	215311214	11	39364											
GPR75	10936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54080607	54080607	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	54080607	A	G	54080607	2	3	655	1	0	0	0	0	0	0	0	1	6715	175	7	3		3	GPR75	2	54080607	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	26192448	54080607	189118766	12	39365											
USP39	10713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85875075	85875075	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	85875075	T	G	85875075	4	3	655	1	0	0	0	0	0	1	0	0	17082	1764	61	5	1632	5	USP39	2	85875075	Nonsense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	31794468	85875075	157324298	13	39366											
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	149248040	149248040	+	Silent	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	149248040	A	C	149248040	2	2	655	1	0	0	0	0	0	0	0	1	9354	117	5	5		5	MBD5	2	149248040	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	63372965	149248040	93951333	14	39367											
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	223066673	223066673	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	223066673	C	T	223066673	2	4	655	1	0	0	0	0	0	0	0	1	11487	564	20	2		2	PAX3	2	223066673	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	73818633	223066673	20132700	15	39368											
DOCK10	55619	hgsc.bcm.edu	37	2	225630473	225630473	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	225630473	G	C	225630473	3	2	655	1	0	0	0	0	1	0	0	0	4687	1261	44	4	38	4	DOCK10	2	225630473	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	2563800	225630473	17568900	16	39369											
MYD88	4615	hgsc.bcm.edu	37	3	38180515	38180515	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	38180515	C	T	38180515	2	4	655	1	0	0	0	0	0	0	0	1	10030	709	25	2		2	MYD88	3	38180515	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		38180515	159841915	17	39370											
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48690562	48690562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	48690562	A	C	48690562	3	2	655	1	0	0	0	0	1	0	0	0	3225	304	11	5	4535	5	CELSR3	3	48690562	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	10510047	48690562	149331868	18	39371											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130292932	130292932	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	130292932	T	A	130292932	3	1	655	1	0	0	0	0	1	0	0	0	3705	1696	59	5	3136	5	COL6A6	3	130292932	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	81602370	130292932	67729498	19	39372											
ASTE1	28990	hgsc.bcm.edu	37	3	130743293	130743300	+	Frame_Shift_Del	DEL	TTCTCGAT	TTCTCGAT	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	TTCTCGAT	TTCTCGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	-	130743300	TTCTCGAT	-	130743293	7	5	655	1	0	1	0	1	0	0	0	0	1062	1838	64	0	1197	0	ASTE1	3	130743293	Frame_Shift_Del	DEL	TTCTCGAT	TCGA-IZ-8195-01A-31D-2396-08	450361	130743293	67279137	20	39373											
LRPAP1	4043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3519768	3519768	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	3519768	A	G	3519768	2	3	655	1	0	0	0	0	0	0	0	1	8971	175	7	3		3	LRPAP1	4	3519768	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08		3519768	187634508	21	39374											
TBC1D19	55296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	26737100	26737100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	26737100	T	A	26737100	3	1	655	1	0	0	0	0	1	0	0	0	15619	1783	62	5	1170	5	TBC1D19	4	26737100	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	23217332	26737100	164417176	22	39375											
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88029381	88029381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	88029381	G	T	88029381	3	4	655	1	0	0	0	0	1	0	0	0	356	1290	45	4	1506	4	AFF1	4	88029381	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	61292281	88029381	103124895	23	39376											
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	110415933	110415933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	110415933	A	G	110415933	3	3	655	1	0	0	0	0	1	0	0	0	14008	449	16	3	1431	3	SEC24B	4	110415933	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	22386552	110415933	80738343	24	39377											
SPATA5	166378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123848831	123848831	+	Missense_Mutation	SNP	A	A	G	rs201699296		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	123848831	A	G	123848831	3	3	655	1	0	0	0	0	1	0	0	0	15023	217	8	3	212	3	SPATA5	4	123848831	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	13432898	123848831	67305445	25	39378											
MAML3	55534	hgsc.bcm.edu	37	4	140811108	140811108	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	140811108	C	T	140811108	2	4	655	1	0	0	0	0	0	0	0	1	9214	796	28	2		2	MAML3	4	140811108	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	16962277	140811108	50343168	26	39379											
TRIM2	23321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	154215496	154215496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	154215496	A	T	154215496	3	4	655	1	0	0	0	0	1	0	0	0	16506	11	1	5	663	5	TRIM2	4	154215496	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	13404388	154215496	36938780	27	39380											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155225827	155225827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	155225827	T	C	155225827	3	2	655	1	0	0	0	0	1	0	0	0	4290	1464	51	3	4552	3	DCHS2	4	155225827	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	1010331	155225827	35928449	28	39381											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187539116	187539116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	187539116	A	G	187539116	3	3	655	1	0	0	0	0	1	0	0	0	5696	72	3	3	5214	3	FAT1	4	187539116	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	32313289	187539116	3615160	29	39382											
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1219640	1219640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	1219640	T	C	1219640	3	2	655	1	0	0	0	0	1	0	0	0	14695	1493	52	3	1437	3	SLC6A19	5	1219640	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		1219640	179695620	30	39383											
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14497016	14497016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	14497016	C	A	14497016	3	1	655	1	0	0	0	0	1	0	0	0	16564	652	23	4	8107	4	TRIO	5	14497016	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	13277376	14497016	166418244	31	39384											
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74892358	74892358	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	74892358	G	C	74892358	3	2	655	1	0	0	0	0	1	0	0	0	12211	943	33	4	1886	4	POLK	5	74892358	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	60395342	74892358	106022902	32	39385											
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78426847	78426847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	78426847	A	G	78426847	3	3	655	1	0	0	0	0	1	0	0	0	1425	131	5	3	1159	3	BHMT	5	78426847	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	3534489	78426847	102488413	33	39386											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	80040402	80040402	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	80040402	G	A	80040402	2	1	655	1	0	0	0	0	0	0	0	1	9878	933	33	2		2	MSH3	5	80040402	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	1613555	80040402	100874858	34	39387											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	118500212	118500213	+	Frame_Shift_Ins	INS	-	-	AGTCATTT	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	AGTCATTT	118500213	-	AGTCATTT	118500212	7	5	655	1	0	1	1	0	0	0	0	0	4596	117	5	0	4791	0	DMXL1	5	118500212	Frame_Shift_Ins	INS	-	TCGA-IZ-8195-01A-31D-2396-08	38459810	118500212	62415048	35	39388											
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	157075894	157075894	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	157075894	A	T	157075894	3	4	655	1	0	0	0	0	1	0	0	0	14965	446	16	5	1299	5	SOX30	5	157075894	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	38575682	157075894	23839366	36	39389											
NHP2	55651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	177580732	177580732	+	Silent	SNP	G	G	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	177580732	G	T	177580732	2	4	655	1	0	0	0	0	0	0	0	1	10416	1277	45	4		4	NHP2	5	177580732	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	20504838	177580732	3334528	37	39390											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179193185	179193185	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	179193185	G	T	179193185	4	4	655	1	0	0	0	0	0	1	0	0	9212	943	33	4	1180	4	MAML1	5	179193185	Nonsense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	1612453	179193185	1722075	38	39391											
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179320371	179320371	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	179320371	T	A	179320371	3	1	655	1	0	0	0	0	1	0	0	0	15640	1551	54	5	3150	5	TBC1D9B	5	179320371	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	127186	179320371	1594889	39	39392											
TBC1D7	51256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	13307966	13307966	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	13307966	A	C	13307966	3	2	655	1	0	0	0	0	1	0	0	0	15636	127	5	5	362	5	TBC1D7	6	13307966	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08		13307966	157807101	40	39393											
ZNF292	23036	broad.mit.edu	37	6	87928395	87928395	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	-	87928395	A	-	87928395	7	5	655	1	0	1	0	1	0	0	0	0	17838	247	9	0	498	0	ZNF292	6	87928395	Frame_Shift_Del	DEL	A	TCGA-IZ-8195-01A-31D-2396-08	74620429	87928395	83186672	41	39394											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	106968989	106968991	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	-	106968991	TCT	-	106968989	7	5	655	1	0	1	0	1	0	0	0	0	430	1432	50	0	2688	0	AIM1	6	106968989	In_Frame_Del	DEL	TCT	TCGA-IZ-8195-01A-31D-2396-08	19040594	106968989	64146078	42	39395											
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	135644423	135644423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	135644423	C	A	135644423	4	1	655	1	0	0	0	0	0	1	0	0	413	835	29	4	405	4	AHI1	6	135644423	Nonsense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	28675434	135644423	35470644	43	39396											
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139251190	139251190	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	139251190	G	C	139251190	3	2	655	1	0	0	0	0	1	0	0	0	13241	971	34	4	1257	4	REPS1	6	139251190	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	3606767	139251190	31863877	44	39397											
UST	10090	hgsc.bcm.edu	37	6	149068615	149068615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	149068615	C	T	149068615	3	4	655	1	0	0	0	0	1	0	0	0	17105	594	21	2	51	2	UST	6	149068615	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	9817425	149068615	22046452	45	39398											
HOXA3	3200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	27147884	27147884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	27147884	G	A	27147884	3	1	655	1	0	0	0	0	1	0	0	0	7300	1087	38	1	353	1	HOXA3	7	27147884	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08		27147884	131990779	46	39399											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48411809	48411809	+	Silent	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	48411809	C	A	48411809	2	1	655	1	0	0	0	0	0	0	0	1	31	668	24	4		4	ABCA13	7	48411809	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	21263925	48411809	110726854	47	39400											
TMEM139	135932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142983611	142983611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	142983611	T	C	142983611	3	2	655	1	0	0	0	0	1	0	0	0	16066	1522	53	3	346	3	TMEM139	7	142983611	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	94571802	142983611	16155052	48	39401											
CA8	767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	61192348	61192348	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	61192348	C	T	61192348	2	4	655	1	0	0	0	0	0	0	0	1	2525	755	27	1		1	CA8	8	61192348	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		61192348	85171674	49	39402											
ZC3H3	23144	hgsc.bcm.edu	37	8	144550696	144550696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	144550696	C	T	144550696	3	4	655	1	0	0	0	0	1	0	0	0	17581	768	27	1	909	1	ZC3H3	8	144550696	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	83358348	144550696	1813326	50	39403											
MAPK15	225689	hgsc.bcm.edu	37	8	144802400	144802400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	144802400	A	G	144802400	3	3	655	1	0	0	0	0	1	0	0	0	9284	289	10	3	752	3	MAPK15	8	144802400	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	251704	144802400	1561622	51	39404											
GPT	2875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145732311	145732312	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	145732312	-	A	145732311	7	5	655	1	0	1	1	0	0	0	0	0	6744	668	24	0	1461	0	GPT	8	145732311	Frame_Shift_Ins	INS	-	TCGA-IZ-8195-01A-31D-2396-08	929911	145732311	631711	52	39405											
FBXO10	26267	hgsc.bcm.edu	37	9	37537315	37537315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	37537315	C	A	37537315	3	1	655	1	0	0	0	0	1	0	0	0	5733	710	25	4	1695	4	FBXO10	9	37537315	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		37537315	103676116	53	39406											
CBWD5	220869	hgsc.bcm.edu	37	9	70490003	70490003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	70490003	C	A	70490003	3	1	655	1	0	0	0	0	1	0	0	0	2717	593	21	4	1029	4	CBWD5	9	70490003	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	32952688	70490003	70723428	54	39407											
C9orf171	389799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135447853	135447853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	135447853	G	A	135447853	3	1	655	1	0	0	0	0	1	0	0	0	2472	1145	40	1	945	1	C9orf171	9	135447853	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	64957850	135447853	5765578	55	39408											
SNAPC4	6621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139273027	139273027	+	Silent	SNP	C	C	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	139273027	C	G	139273027	2	3	655	1	0	0	0	0	0	0	0	1	14850	726	26	4		4	SNAPC4	9	139273027	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	3825174	139273027	1940404	56	39409											
GTPBP4	23560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	1061760	1061760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	1061760	C	A	1061760	3	1	655	1	0	0	0	0	1	0	0	0	6889	797	28	4	1738	4	GTPBP4	10	1061760	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		1061760	134472987	57	39410											
KLF6	1316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3822362	3822362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	3822362	C	T	3822362	3	4	655	1	0	0	0	0	1	0	0	0	8357	835	29	2	123	2	KLF6	10	3822362	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	2760602	3822362	131712385	58	39411											
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7829859	7829859	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	7829859	G	C	7829859	3	2	655	1	0	0	0	0	1	0	0	0	8322	1203	42	4	1195	4	KIN	10	7829859	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	4007497	7829859	127704888	59	39412											
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103563517	103563517	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	103563517	A	G	103563517	2	3	655	1	0	0	0	0	0	0	0	1	9562	214	8	3		3	MGEA5	10	103563517	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	95733658	103563517	31971230	60	39413											
NPS	594857	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	129347639	129347639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	129347639	A	G	129347639	3	3	655	1	0	0	0	0	1	0	0	0	10606	434	15	3	9	3	NPS	10	129347639	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	25784122	129347639	6187108	61	39414											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6662595	6662595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	6662595	C	G	6662595	3	3	655	1	0	0	0	0	1	0	0	0	4289	922	32	4	9726	4	DCHS1	11	6662595	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		6662595	128343921	62	39415											
OR5F1	338674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55761615	55761615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	55761615	C	T	55761615	3	4	655	1	0	0	0	0	1	0	0	0	11165	478	17	2	460	2	OR5F1	11	55761615	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	49099020	55761615	79244901	63	39416			1	85		2	2	22	N	C_A	6.444272e-05
OR5F1	338674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55761636	55761636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	55761636	A	C	55761636	3	2	655	1	0	0	0	0	1	0	0	0	11165	72	3	5	481	5	OR5F1	11	55761636	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	21	55761636	79244880	64	39417			1	85		2	2	22	N	C_A	6.444272e-05
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751585	+	Splice_Site	SNP	T	T	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	76751585	T	G	76751585	5	3	655	1	0	0	0	0	0	0	1	0	1261	1567	55	5	992	5	B3GNT6	11	76751585	Splice_Site	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	20989949	76751585	58254931	65	39418											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76903188	76903188	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	76903188	C	T	76903188	2	4	655	1	0	0	0	0	0	0	0	1	10089	535	19	1		1	MYO7A	11	76903188	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	151603	76903188	58103328	66	39419											
PRDM10	56980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	129817185	129817185	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	129817185	G	A	129817185	2	1	655	1	0	0	0	0	0	0	0	1	12461	1219	43	2		2	PRDM10	11	129817185	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	52913997	129817185	5189331	67	39420											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57573720	57573720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	57573720	G	A	57573720	3	1	655	1	0	0	0	0	1	0	0	0	8958	1377	48	2	5240	2	LRP1	12	57573720	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08		57573720	76278175	68	39421											
ZMYM5	9205	hgsc.bcm.edu	37	13	20398977	20398977	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	20398977	A	G	20398977	2	3	655	1	0	0	0	0	0	0	0	1	17715	243	9	3		3	ZMYM5	13	20398977	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08		20398977	94770901	69	39422											
MTMR6	9107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25823587	25823587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	25823587	G	C	25823587	3	2	655	1	0	0	0	0	1	0	0	0	9954	1261	44	4	220	4	MTMR6	13	25823587	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	5424610	25823587	89346291	70	39423											
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	98652854	98652854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	98652854	G	A	98652854	3	1	655	1	0	0	0	0	1	0	0	0	7803	1145	40	1	1159	1	IPO5	13	98652854	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	72829267	98652854	16517024	71	39424											
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99037979	99037979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	99037979	A	C	99037979	3	2	655	1	0	0	0	0	1	0	0	0	5683	333	12	5	919	5	FARP1	13	99037979	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	385125	99037979	16131899	72	39425											
MYO16	23026	hgsc.bcm.edu	37	13	109793009	109793009	+	Silent	SNP	C	C	T	rs141423536		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	109793009	C	T	109793009	2	4	655	1	0	0	0	0	0	0	0	1	10071	506	18	2		2	MYO16	13	109793009	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	10755030	109793009	5376869	73	39426											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33961646	33961646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	33961646	T	C	33961646	3	2	655	1	0	0	0	0	1	0	0	0	13783	1551	54	3	5857	3	RYR3	15	33961646	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		33961646	68569746	74	39427											
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35085735	35085735	+	Silent	SNP	G	G	A	rs149432225		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	35085735	G	A	35085735	2	1	655	1	0	0	0	0	0	0	0	1	195	1140	40	1		1	ACTC1	15	35085735	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	1124089	35085735	67445657	75	39428											
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	39885784	39885784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	39885784	T	C	39885784	3	2	655	1	0	0	0	0	1	0	0	0	15865	1609	56	3	3252	3	THBS1	15	39885784	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	4800049	39885784	62645608	76	39429											
CGNL1	84952	hgsc.bcm.edu	37	15	57808995	57808995	+	Silent	SNP	G	G	T	rs76645518	alternate_allele	TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	57808995	G	T	57808995	2	4	655	1	0	0	0	0	0	0	0	1	3306	1045	37	4		4	CGNL1	15	57808995	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	17923211	57808995	44722397	77	39430											
HMG20A	10363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77759508	77759508	+	Silent	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	77759508	C	A	77759508	2	1	655	1	0	0	0	0	0	0	0	1	7228	581	21	4		4	HMG20A	15	77759508	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	19950513	77759508	24771884	78	39431											
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2258565	2258565	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	2258565	C	T	2258565	2	4	655	1	0	0	0	0	0	0	0	1	9641	784	28	2		2	MLST8	16	2258565	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		2258565	88096188	79	39432											
PPP4C	5531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30094761	30094761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	30094761	G	A	30094761	3	1	655	1	0	0	0	0	1	0	0	0	12412	1029	36	2	368	2	PPP4C	16	30094761	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	27836196	30094761	60259992	80	39433											
ITFG1	81533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	47189669	47189669	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	-	47189669	T	-	47189669	7	5	655	1	0	1	0	1	0	0	0	0	7876	1722	60	0	42	0	ITFG1	16	47189669	Frame_Shift_Del	DEL	T	TCGA-IZ-8195-01A-31D-2396-08	17094908	47189669	43165084	81	39434											
MARVELD3	91862	broad.mit.edu;bcgsc.ca	37	16	71663293	71663293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	71663293	T	A	71663293	3	1	655	1	0	0	0	0	1	0	0	0	9326	1580	55	5	497	5	MARVELD3	16	71663293	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	24473624	71663293	18691460	82	39435											
ABR	29	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	916353	916353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	916353	T	C	916353	3	2	655	1	0	0	0	0	1	0	0	0	99	1435	50	3	764	3	ABR	17	916353	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		916353	80278857	83	39436											
CTNS	1497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3550808	3550808	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	3550808	C	T	3550808	2	4	655	1	0	0	0	0	0	0	0	1	4023	813	29	2		2	CTNS	17	3550808	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	2634455	3550808	77644402	84	39437											
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36486249	36486249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	36486249	A	C	36486249	3	2	655	1	0	0	0	0	1	0	0	0	6681	333	12	5	3904	5	GPR179	17	36486249	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	32935441	36486249	44708961	85	39438											
FOXK2	3607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80543893	80543893	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	-	80543893	C	-	80543893	7	5	655	1	0	1	0	1	0	0	0	0	6022	739	26	0	1419	0	FOXK2	17	80543893	Frame_Shift_Del	DEL	C	TCGA-IZ-8195-01A-31D-2396-08	44057644	80543893	651317	86	39439											
PRR19	284338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42814766	42814766	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	42814766	C	T	42814766	2	4	655	1	0	0	0	0	0	0	0	1	12601	610	22	2		2	PRR19	19	42814766	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		42814766	16314217	87	39440											
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46317875	46317875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	46317875	G	C	46317875	3	2	655	1	0	0	0	0	1	0	0	0	13720	1203	42	4	1617	4	RSPH6A	19	46317875	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	3503109	46317875	12811108	88	39441											
MYPOP	339344	hgsc.bcm.edu	37	19	46394100	46394100	+	Silent	SNP	C	C	T	rs142323830		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	T	46394100	C	T	46394100	2	4	655	1	0	0	0	0	0	0	0	1	10106	639	23	1		1	MYPOP	19	46394100	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	76225	46394100	12734883	89	39442											
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57325186	57325186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	57325186	A	G	57325186	3	3	655	1	0	0	0	0	1	0	0	0	11727	159	6	3	146	3	PEG3	19	57325186	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	10931086	57325186	1803797	90	39443											
ZNF814	730051	broad.mit.edu	37	19	58384658	58384660	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	-	58384660	CTT	-	58384658	7	5	655	1	0	1	0	1	0	0	0	0	18188	564	20	0	471	0	ZNF814	19	58384658	In_Frame_Del	DEL	CTT	TCGA-IZ-8195-01A-31D-2396-08	1059472	58384658	744325	91	39444											
SAMHD1	25939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35532631	35532631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	35532631	T	C	35532631	3	2	655	1	0	0	0	0	1	0	0	0	13841	1850	64	3	464	3	SAMHD1	20	35532631	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		35532631	27492889	92	39445											
FITM2	128486	hgsc.bcm.edu	37	20	42939740	42939740	+	Missense_Mutation	SNP	G	G	A	rs144244368		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	A	42939740	G	A	42939740	3	1	655	1	0	0	0	0	1	0	0	0	5906	1086	38	1	747	1	FITM2	20	42939740	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	7407109	42939740	20085780	93	39446											
CACNA1I	8911	hgsc.bcm.edu	37	22	40080409	40080409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	G	40080409	A	G	40080409	3	3	655	1	0	0	0	0	1	0	0	0	2548	72	3	3	6075	3	CACNA1I	22	40080409	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08		40080409	11224157	94	39447											
ZFY	7544	broad.mit.edu	37	Y	2843189	2843189	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	C	2843189	G	C	2843189	3	2	655	1	0	0	0	0	1	0	0	0	17674	1319	46	4	698	4	ZFY	24	2843189	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08		2843189	56530377	95	39448											
DDI2	84301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15956839	15956839	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	15956839	C	T	15956839	2	4	656	1	0	0	0	0	0	0	0	1	4331	825	29	2		2	DDI2	1	15956839	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		15956839	233293782	1	39449											
PLA2G5	5322	hgsc.bcm.edu	37	1	20416294	20416294	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	20416294	G	A	20416294	2	1	656	1	0	0	0	0	0	0	0	1	12014	1074	38	1		1	PLA2G5	1	20416294	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	4459455	20416294	228834327	2	39450											
MSH4	4438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	76269502	76269502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	76269502	G	A	76269502	3	1	656	1	0	0	0	0	1	0	0	0	9879	942	33	2	337	2	MSH4	1	76269502	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	55853208	76269502	172981119	3	39451											
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90180228	90180228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	90180228	C	A	90180228	3	1	656	1	0	0	0	0	1	0	0	0	9030	681	24	4	2105	4	LRRC8C	1	90180228	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	13910726	90180228	159070393	4	39452											
RBM15	64783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110882978	110882978	+	Silent	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	110882978	T	C	110882978	2	2	656	1	0	0	0	0	0	0	0	1	13129	1538	54	3		3	RBM15	1	110882978	Silent	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	20702750	110882978	138367643	5	39453											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145561688	145561688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	145561688	A	G	145561688	3	3	656	1	0	0	0	0	1	0	0	0	664	188	7	3	1414	3	ANKRD35	1	145561688	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	34678710	145561688	103688933	6	39454											
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154314963	154314968	+	In_Frame_Del	DEL	GTTTGA	GTTTGA	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	GTTTGA	GTTTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	154314968	GTTTGA	-	154314963	7	5	656	1	0	1	0	1	0	0	0	0	1195	1364	48	0	1534	0	ATP8B2	1	154314963	In_Frame_Del	DEL	GTTTGA	TCGA-IZ-8196-01A-11D-2396-08	8753275	154314963	94935658	7	39455	498	3									
ATP8B2	57198	bcgsc.ca	37	1	154314970	154314970	+	Missense_Mutation	SNP	G	G	C	rs201587979	alternate_allele	TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	154314970	G	C	154314970	3	2	656	1	0	0	0	0	1	0	0	0	1195	1145	40	4	1541	4	ATP8B2	1	154314970	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	7	154314970	94935651	8	39456	498	3									
ATP8B2	57198	bcgsc.ca	37	1	154314972	154314972	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	154314972	C	T	154314972	2	4	656	1	0	0	0	0	0	0	0	1	1195	842	30	2		2	ATP8B2	1	154314972	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	2	154314972	94935649	9	39457	498	3									
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	166974561	166974561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	166974561	C	A	166974561	3	1	656	1	0	0	0	0	1	0	0	0	9161	913	32	4	802	4	MAEL	1	166974561	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	12659589	166974561	82276060	10	39458											
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205028742	205028742	+	Silent	SNP	C	C	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	205028742	C	A	205028742	2	1	656	1	0	0	0	0	0	0	0	1	3643	610	22	4		4	CNTN2	1	205028742	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	38054181	205028742	44221879	11	39459											
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247070995	247070995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	247070995	C	T	247070995	3	4	656	1	0	0	0	0	1	0	0	0	408	681	24	2	6306	2	AHCTF1	1	247070995	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	42042253	247070995	2179626	12	39460											
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248112473	248112473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	248112473	C	T	248112473	3	4	656	1	0	0	0	0	1	0	0	0	11016	710	25	2	316	2	OR2L8	1	248112473	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	1041478	248112473	1138148	13	39461											
MBOAT2	129642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	9002791	9002791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	9002791	A	-	9002791	7	5	656	1	0	1	0	1	0	0	0	0	9364	130	5	0	460	0	MBOAT2	2	9002791	Frame_Shift_Del	DEL	A	TCGA-IZ-8196-01A-11D-2396-08		9002791	234196582	14	39462											
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	10051000	10051000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	10051000	T	C	10051000	3	2	656	1	0	0	0	0	1	0	0	0	15532	1696	59	3	1129	3	TAF1B	2	10051000	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	1048209	10051000	233148373	15	39463											
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11960558	11960558	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	11960558	G	C	11960558	3	2	656	1	0	0	0	0	1	0	0	0	8925	1029	36	4	2501	4	LPIN1	2	11960558	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	1909558	11960558	231238815	16	39464	499	2									
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11960560	11960560	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	11960560	A	G	11960560	2	3	656	1	0	0	0	0	0	0	0	1	8925	407	15	3		3	LPIN1	2	11960560	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	2	11960560	231238813	17	39465	499	2									
KIF3C	3797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26178417	26178417	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	26178417	A	C	26178417	3	2	656	1	0	0	0	0	1	0	0	0	8309	304	11	5	642	5	KIF3C	2	26178417	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	14217857	26178417	217020956	18	39466											
RBKS	64080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	28004505	28004506	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	28004506	-	T	28004505	7	5	656	1	0	1	1	0	0	0	0	0	13121	913	32	0	26	0	RBKS	2	28004505	Frame_Shift_Ins	INS	-	TCGA-IZ-8196-01A-11D-2396-08	1826088	28004505	215194868	19	39467											
PLEKHH2	130271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	43953471	43953471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	43953471	G	T	43953471	3	4	656	1	0	0	0	0	1	0	0	0	12084	1290	45	4	2664	4	PLEKHH2	2	43953471	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	15948966	43953471	199245902	20	39468											
RAB1A	5861	hgsc.bcm.edu	37	2	65318133	65318133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	65318133	T	C	65318133	3	2	656	1	0	0	0	0	1	0	0	0	12918	1406	49	3	357	3	RAB1A	2	65318133	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	21364662	65318133	177881240	21	39469											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	84777109	84777109	+	Silent	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	84777109	A	T	84777109	2	4	656	1	0	0	0	0	0	0	0	1	4607	349	13	5		5	DNAH6	2	84777109	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	19458976	84777109	158422264	22	39470											
POTEF	728378	hgsc.bcm.edu	37	2	130872496	130872496	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	130872496	T	-	130872496	7	5	656	1	0	1	0	1	0	0	0	0	12272	1606	56	0	2511	0	POTEF	2	130872496	Frame_Shift_Del	DEL	T	TCGA-IZ-8196-01A-11D-2396-08	46095387	130872496	112326877	23	39471											
POTEE	445582	hgsc.bcm.edu	37	2	131981572	131981572	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	131981572	A	-	131981572	7	5	656	1	0	1	0	1	0	0	0	0	12271	131	5	0	776	0	POTEE	2	131981572	Frame_Shift_Del	DEL	A	TCGA-IZ-8196-01A-11D-2396-08	1109076	131981572	111217801	24	39472											
MCM6	4175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136620201	136620202	+	Missense_Mutation	DNP	CT	CT	AG	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	AG	136620202	CT	AG	136620201	3	1	656	1	0	0	0	0	1	0	0	0	9398	565	20	4	1309	4	MCM6	2	136620201	Missense_Mutation	DNP	CT	TCGA-IZ-8196-01A-11D-2396-08	4638629	136620201	106579172	25	39473											
HOXD8	3234	broad.mit.edu;bcgsc.ca	37	2	176995325	176995341	+	Frame_Shift_Del	DEL	GCCCTCCGGGACTGGGT	GCCCTCCGGGACTGGGT	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	GCCCTCCGGGACTGGGT	GCCCTCCGGGACTGGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	176995341	GCCCTCCGGGACTGGGT	-	176995325	7	5	656	1	0	1	0	1	0	0	0	0	7332	1074	38	0	233	0	HOXD8	2	176995325	Frame_Shift_Del	DEL	GCCCTCCGGGACTGGGT	TCGA-IZ-8196-01A-11D-2396-08	40375124	176995325	66204048	26	39474											
ATG9A	79065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220090289	220090289	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	220090289	A	C	220090289	3	2	656	1	0	0	0	0	1	0	0	0	1102	246	9	5	2345	5	ATG9A	2	220090289	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	43094964	220090289	23109084	27	39475											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228860230	228860230	+	Silent	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	228860230	G	C	228860230	2	2	656	1	0	0	0	0	0	0	0	1	15060	1335	47	4		4	SPHKAP	2	228860230	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	8769941	228860230	14339143	28	39476											
CAMK1	8536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9802445	9802445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	9802445	C	T	9802445	3	4	656	1	0	0	0	0	1	0	0	0	2598	652	23	1	492	1	CAMK1	3	9802445	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		9802445	188219985	29	39477											
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56789065	56789065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	56789065	T	A	56789065	3	1	656	1	0	0	0	0	1	0	0	0	904	1667	58	5	1293	5	ARHGEF3	3	56789065	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	46986620	56789065	141233365	30	39478											
RNF13	11342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	149678575	149678575	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	149678575	C	G	149678575	3	3	656	1	0	0	0	0	1	0	0	0	13450	507	18	4	864	4	RNF13	3	149678575	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	92889510	149678575	48343855	31	39479											
PSMD2	5708	hgsc.bcm.edu	37	3	184019770	184019770	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	184019770	C	T	184019770	2	4	656	1	0	0	0	0	0	0	0	1	12708	776	27	1		1	PSMD2	3	184019770	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	34341195	184019770	14002660	32	39480											
GABRA2	2555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	46312218	46312218	+	Silent	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	46312218	A	T	46312218	2	4	656	1	0	0	0	0	0	0	0	1	6168	291	11	5		5	GABRA2	4	46312218	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		46312218	144842058	33	39481											
CLOCK	9575	hgsc.bcm.edu	37	4	56322462	56322462	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	56322462	C	G	56322462	3	3	656	1	0	0	0	0	1	0	0	0	3551	478	17	4	1790	4	CLOCK	4	56322462	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	10010244	56322462	134831814	34	39482											
HERC5	51191	hgsc.bcm.edu	37	4	89408218	89408218	+	Splice_Site	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	89408218	A	G	89408218	5	3	656	1	0	0	0	0	0	0	1	0	7068	434	15	3	1908	3	HERC5	4	89408218	Splice_Site	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	33085756	89408218	101746058	35	39483											
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	173269759	173269759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	173269759	C	T	173269759	3	4	656	1	0	0	0	0	1	0	0	0	6232	759	27	1	486	1	GALNTL6	4	173269759	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	83861541	173269759	17884517	36	39484											
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	476140	476140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	476140	T	A	476140	3	1	656	1	0	0	0	0	1	0	0	0	14726	1551	54	5	385	5	SLC9A3	5	476140	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08		476140	180439120	37	39485											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5235155	5235155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	5235155	G	C	5235155	3	2	656	1	0	0	0	0	1	0	0	0	261	1232	43	4	1929	4	ADAMTS16	5	5235155	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	4759015	5235155	175680105	38	39486											
IL7R	3575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	35876145	35876145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	35876145	G	T	35876145	3	4	656	1	0	0	0	0	1	0	0	0	7712	1290	45	4	967	4	IL7R	5	35876145	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	30640990	35876145	145039115	39	39487											
TBCA	6902	hgsc.bcm.edu;broad.mit.edu	37	5	76987260	76987260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	76987260	C	A	76987260	3	1	656	1	0	0	0	0	1	0	0	0	15641	565	20	4	20	4	TBCA	5	76987260	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	41111115	76987260	103928000	40	39488											
PPIC	5480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	122359696	122359696	+	Silent	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	122359696	T	A	122359696	2	1	656	1	0	0	0	0	0	0	0	1	12330	1567	55	5		5	PPIC	5	122359696	Silent	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	45372436	122359696	58555564	41	39489											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140223201	140223201	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	140223201	G	A	140223201	2	1	656	1	0	0	0	0	0	0	0	1	11537	1045	37	1		1	PCDHA8	5	140223201	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	17863505	140223201	40692059	42	39490											
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140811805	140811805	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	140811805	G	A	140811805	2	1	656	1	0	0	0	0	0	0	0	1	11560	933	33	2		2	PCDHGA12	5	140811805	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	588604	140811805	40103455	43	39491											
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	154183178	154183178	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	154183178	T	A	154183178	3	1	656	1	0	0	0	0	1	0	0	0	8635	1667	58	5	2131	5	LARP1	5	154183178	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	13371373	154183178	26732082	44	39492											
PANK3	79646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167995656	167995656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	167995656	G	A	167995656	3	1	656	1	0	0	0	0	1	0	0	0	11425	1058	37	1	760	1	PANK3	5	167995656	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	13812478	167995656	12919604	45	39493											
DHX16	8449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30640454	30640454	+	Silent	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	30640454	G	T	30640454	2	4	656	1	0	0	0	0	0	0	0	1	4504	1277	45	4		4	DHX16	6	30640454	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		30640454	140474613	46	39494	500	2									
DHX16	8449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30640464	30640464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	30640464	G	T	30640464	3	4	656	1	0	0	0	0	1	0	0	0	4504	1261	44	4	3050	4	DHX16	6	30640464	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	10	30640464	140474603	47	39495	500	2									
TNF	7124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31545047	31545049	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	31545049	CCC	-	31545047	7	5	656	1	0	1	0	1	0	0	0	0	16283	747	26	0	449	0	TNF	6	31545047	In_Frame_Del	DEL	CCC	TCGA-IZ-8196-01A-11D-2396-08	904583	31545047	139570020	48	39496											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90426453	90426453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	90426453	C	T	90426453	3	4	656	1	0	0	0	0	1	0	0	0	9422	739	26	2	10367	2	MDN1	6	90426453	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	58881406	90426453	80688614	49	39497											
SIM1	6492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	100895187	100895187	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	100895187	A	T	100895187	3	4	656	1	0	0	0	0	1	0	0	0	14336	304	11	5	1361	5	SIM1	6	100895187	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	10468734	100895187	70219880	50	39498											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	111695488	111695488	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	111695488	T	-	111695488	7	5	656	1	0	1	0	1	0	0	0	0	13253	1493	52	0	5402	0	REV3L	6	111695488	Frame_Shift_Del	DEL	T	TCGA-IZ-8196-01A-11D-2396-08	10800301	111695488	59419579	51	39499											
AHR	196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	17362177	17362177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	17362177	A	T	17362177	3	4	656	1	0	0	0	0	1	0	0	0	416	301	11	5	316	5	AHR	7	17362177	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		17362177	141776486	52	39500											
TWISTNB	221830	ucsc.edu	37	7	19738032	19738032	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	19738032	C	T	19738032	2	4	656	1	0	0	0	0	0	0	0	1	16796	912	32	2		2	TWISTNB	7	19738032	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	2375855	19738032	139400631	53	39501											
CHN2	1124	ucsc.edu;bcgsc.ca	37	7	29519827	29519827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	29519827	T	C	29519827	3	2	656	1	0	0	0	0	1	0	0	0	3365	1783	62	3	703	3	CHN2	7	29519827	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	9781795	29519827	129618836	54	39502											
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31877507	31877507	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	31877507	C	T	31877507	2	4	656	1	0	0	0	0	0	0	0	1	11642	912	32	2		2	PDE1C	7	31877507	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	2357680	31877507	127261156	55	39503											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82579067	82579067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	82579067	C	A	82579067	3	1	656	1	0	0	0	0	1	0	0	0	11590	739	26	4	4688	4	PCLO	7	82579067	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	50701560	82579067	76559596	56	39504											
MET	4233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	116422117	116422117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	116422117	T	A	116422117	3	1	656	1	0	0	0	0	1	0	0	0	9492	1725	60	5	3718	5	MET	7	116422117	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	33843050	116422117	42716546	57	39505											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	117431390	117431391	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	117431391	-	C	117431390	7	5	656	1	0	1	1	0	0	0	0	0	4047	175	7	0	3211	0	CTTNBP2	7	117431390	Frame_Shift_Ins	INS	-	TCGA-IZ-8196-01A-11D-2396-08	1009273	117431390	41707273	58	39506	501	2									
CTTNBP2	83992	hgsc.bcm.edu;bcgsc.ca	37	7	117431391	117431391	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	117431391	G	-	117431391	7	5	656	1	0	1	0	1	0	0	0	0	4047	1029	36	0	3212	0	CTTNBP2	7	117431391	Frame_Shift_Del	DEL	G	TCGA-IZ-8196-01A-11D-2396-08	1	117431391	41707272	59	39507	501	2									
CHRNB3	1142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42565553	42565553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	42565553	G	A	42565553	3	1	656	1	0	0	0	0	1	0	0	0	3394	1290	45	2	235	2	CHRNB3	8	42565553	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		42565553	103798469	60	39508											
RBM12B	389677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	94747484	94747484	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	94747484	A	G	94747484	2	3	656	1	0	0	0	0	0	0	0	1	13127	214	8	3		3	RBM12B	8	94747484	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	52181931	94747484	51616538	61	39509											
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	100514063	100514063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	100514063	C	T	100514063	3	4	656	1	0	0	0	0	1	0	0	0	17202	594	21	2	4240	2	VPS13B	8	100514063	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	5766579	100514063	45849959	62	39510											
DGAT1	8694	ucsc.edu	37	8	145540219	145540219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	145540219	A	T	145540219	3	4	656	1	0	0	0	0	1	0	0	0	4459	201	7	5	5	5	DGAT1	8	145540219	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	45026156	145540219	823803	63	39511											
C1QL3	389941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16556595	16556595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	16556595	C	T	16556595	3	4	656	1	0	0	0	0	1	0	0	0	1962	652	23	1	71	1	C1QL3	10	16556595	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		16556595	118978152	64	39512											
ITGB1	3688	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	33201013	33201013	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	33201013	G	-	33201013	7	5	656	1	0	1	0	1	0	0	0	0	7897	1310	46	0	1145	0	ITGB1	10	33201013	Frame_Shift_Del	DEL	G	TCGA-IZ-8196-01A-11D-2396-08	16644418	33201013	102333734	65	39513											
RUFY2	55680	broad.mit.edu;ucsc.edu	37	10	70152941	70152941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	70152941	T	A	70152941	3	1	656	1	0	0	0	0	1	0	0	0	13752	1464	51	5	1377	5	RUFY2	10	70152941	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	36951928	70152941	65381806	66	39514	502	2									
RUFY2	55680	broad.mit.edu;ucsc.edu	37	10	70152944	70152944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	70152944	C	T	70152944	3	4	656	1	0	0	0	0	1	0	0	0	13752	710	25	2	1380	2	RUFY2	10	70152944	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	3	70152944	65381803	67	39515	502	2									
NOLC1	9221	hgsc.bcm.edu	37	10	103917063	103917063	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	103917063	A	G	103917063	2	3	656	1	0	0	0	0	0	0	0	1	10536	69	3	3		3	NOLC1	10	103917063	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	33764119	103917063	31617684	68	39516											
MUC2	4583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1097183	1097183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	1097183	T	G	1097183	3	3	656	1	0	0	0	0	1	0	0	0	9982	1710	59	5	6729	5	MUC2	11	1097183	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08		1097183	133909333	69	39517											
TPP1	1200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	6638089	6638089	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	6638089	A	-	6638089	7	5	656	1	0	1	0	1	0	0	0	0	16423	260	9	0	1030	0	TPP1	11	6638089	Frame_Shift_Del	DEL	A	TCGA-IZ-8196-01A-11D-2396-08	5540906	6638089	128368427	70	39518											
API5	8539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	43342441	43342441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	43342441	T	C	43342441	3	2	656	1	0	0	0	0	1	0	0	0	773	1406	49	3	312	3	API5	11	43342441	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	36704352	43342441	91664075	71	39519											
OR8I2	120586	hgsc.bcm.edu;broad.mit.edu	37	11	55861616	55861616	+	Missense_Mutation	SNP	C	C	T	rs140206966	byfrequency;alternate_allele	TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	55861616	C	T	55861616	3	4	656	1	0	0	0	0	1	0	0	0	11247	536	19	1	835	1	OR8I2	11	55861616	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	12519175	55861616	79144900	72	39520											
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62488862	62488862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	62488862	T	C	62488862	3	2	656	1	0	0	0	0	1	0	0	0	7282	1821	63	3	751	3	HNRNPUL2	11	62488862	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	6627246	62488862	72517654	73	39521											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877727	82877727	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	82877727	A	G	82877727	2	3	656	1	0	0	0	0	0	0	0	1	11580	330	12	3		3	PCF11	11	82877727	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	20388865	82877727	52128789	74	39522											
MAML2	84441	hgsc.bcm.edu	37	11	95825424	95825424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	95825424	G	T	95825424	3	4	656	1	0	0	0	0	1	0	0	0	9213	1386	48	4	1715	4	MAML2	11	95825424	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	12947697	95825424	39181092	75	39523											
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113078684	113078684	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	113078684	G	C	113078684	3	2	656	1	0	0	0	0	1	0	0	0	10209	991	35	4	903	4	NCAM1	11	113078684	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	17253260	113078684	21927832	76	39524											
C3AR1	719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	8211578	8211578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	8211578	G	A	8211578	3	1	656	1	0	0	0	0	1	0	0	0	2207	971	34	2	248	2	C3AR1	12	8211578	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		8211578	125640317	77	39525											
KLRC1	3821	hgsc.bcm.edu	37	12	10602537	10602537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	10602537	A	G	10602537	3	3	656	1	0	0	0	0	1	0	0	0	8422	246	9	3	404	3	KLRC1	12	10602537	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	2390959	10602537	123249358	78	39526											
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53687232	53687232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	53687232	T	C	53687232	3	2	656	1	0	0	0	0	1	0	0	0	5255	1522	53	3	6455	3	ESPL1	12	53687232	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	43084695	53687232	80164663	79	39527											
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	89743102	89743107	+	In_Frame_Del	DEL	CTGGAA	CTGGAA	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	CTGGAA	CTGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	89743107	CTGGAA	-	89743102	7	5	656	1	0	1	0	1	0	0	0	0	4831	797	28	0	74	0	DUSP6	12	89743102	In_Frame_Del	DEL	CTGGAA	TCGA-IZ-8196-01A-11D-2396-08	36055870	89743102	44108793	80	39528											
ALDH2	217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112227694	112227694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	112227694	T	C	112227694	3	2	656	1	0	0	0	0	1	0	0	0	496	1522	53	3	526	3	ALDH2	12	112227694	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	22484592	112227694	21624201	81	39529											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121437158	121437158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	121437158	T	C	121437158	3	2	656	1	0	0	0	0	1	0	0	0	7258	1580	55	3	1619	3	HNF1A	12	121437158	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	9209464	121437158	12414737	82	39530											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32907353	32907353	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	32907353	A	C	32907353	3	2	656	1	0	0	0	0	1	0	0	0	1501	101	4	5	1772	5	BRCA2	13	32907353	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		32907353	82262525	83	39531											
ESD	2098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	47354151	47354151	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	47354151	A	G	47354151	2	3	656	1	0	0	0	0	0	0	0	1	5252	291	11	3		3	ESD	13	47354151	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	14446798	47354151	67815727	84	39532											
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20666034	20666034	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	20666034	C	T	20666034	2	4	656	1	0	0	0	0	0	0	0	1	10932	581	21	2		2	OR11G2	14	20666034	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		20666034	86683506	85	39533											
SLC22A17	51310	hgsc.bcm.edu	37	14	23816377	23816377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	23816377	A	G	23816377	3	3	656	1	0	0	0	0	1	0	0	0	14461	72	3	3	363	3	SLC22A17	14	23816377	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	3150343	23816377	83533163	86	39534											
C14orf37	145407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	58563683	58563683	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	58563683	C	G	58563683	3	3	656	1	0	0	0	0	1	0	0	0	1773	680	24	4	492	4	C14orf37	14	58563683	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	34747306	58563683	48785857	87	39535											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64596614	64596614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	64596614	T	A	64596614	3	1	656	1	0	0	0	0	1	0	0	0	15458	1490	52	5	14428	5	SYNE2	14	64596614	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	6032931	64596614	42752926	88	39536											
TTC8	123016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89307438	89307438	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	89307438	T	A	89307438	3	1	656	1	0	0	0	0	1	0	0	0	16726	1693	59	5	405	5	TTC8	14	89307438	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	24710824	89307438	18042102	89	39537											
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	103438368	103438368	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	103438368	T	A	103438368	3	1	656	1	0	0	0	0	1	0	0	0	3075	1609	56	5	3463	5	CDC42BPB	14	103438368	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	14130930	103438368	3911172	90	39538											
CATSPER2	117155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43928412	43928412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	43928412	A	G	43928412	3	3	656	1	0	0	0	0	1	0	0	0	2690	304	11	3	768	3	CATSPER2	15	43928412	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		43928412	58602980	91	39539											
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73590713	73590713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	73590713	C	T	73590713	3	4	656	1	0	0	0	0	1	0	0	0	10343	565	20	2	4032	2	NEO1	15	73590713	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	29662301	73590713	28940679	92	39540											
IREB2	3658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78755356	78755356	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	78755356	T	A	78755356	3	1	656	1	0	0	0	0	1	0	0	0	7833	1838	64	5	209	5	IREB2	15	78755356	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	5164643	78755356	23776036	93	39541											
KIAA1199	57214	hgsc.bcm.edu	37	15	81166242	81166242	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	81166242	G	C	81166242	3	2	656	1	0	0	0	0	1	0	0	0	8220	1174	41	4	24	4	KIAA1199	15	81166242	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	2410886	81166242	21365150	94	39542											
ADAMTSL3	57188	hgsc.bcm.edu	37	15	84592741	84592741	+	Silent	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	84592741	T	C	84592741	2	2	656	1	0	0	0	0	0	0	0	1	276	1538	54	3		3	ADAMTSL3	15	84592741	Silent	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	3426499	84592741	17938651	95	39543											
SCNN1B	6338	hgsc.bcm.edu	37	16	23366804	23366804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	23366804	A	G	23366804	3	3	656	1	0	0	0	0	1	0	0	0	13941	43	2	3	780	3	SCNN1B	16	23366804	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		23366804	66987949	96	39544											
HS3ST4	9951	hgsc.bcm.edu	37	16	26147416	26147416	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	26147416	G	A	26147416	2	1	656	1	0	0	0	0	0	0	0	1	7374	1045	37	1		1	HS3ST4	16	26147416	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	2780612	26147416	64207337	97	39545											
SEPHS2	22928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30456715	30456715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	30456715	A	G	30456715	3	3	656	1	0	0	0	0	1	0	0	0	14068	72	3	3	1016	3	SEPHS2	16	30456715	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	4309299	30456715	59898038	98	39546											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30733503	30733503	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	30733503	C	-	30733503	7	5	656	1	0	1	0	1	0	0	0	0	15147	710	25	0	3680	0	SRCAP	16	30733503	Frame_Shift_Del	DEL	C	TCGA-IZ-8196-01A-11D-2396-08	276788	30733503	59621250	99	39547	503	3									
SRCAP	10847	hgsc.bcm.edu;bcgsc.ca	37	16	30733505	30733505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	30733505	G	A	30733505	3	1	656	1	0	0	0	0	1	0	0	0	15147	1000	35	2	3682	2	SRCAP	16	30733505	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	2	30733505	59621248	100	39548	503	3									
SRCAP	10847	hgsc.bcm.edu	37	16	30733507	30733507	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	-	30733507	G	-	30733507	7	5	656	1	0	1	0	1	0	0	0	0	15147	1219	43	0	3684	0	SRCAP	16	30733507	Frame_Shift_Del	DEL	G	TCGA-IZ-8196-01A-11D-2396-08	2	30733507	59621246	101	39549	503	3									
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	61851550	61851550	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	61851550	C	T	61851550	2	4	656	1	0	0	0	0	0	0	0	1	3118	726	26	2		2	CDH8	16	61851550	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	31118043	61851550	28503203	102	39550											
NAE1	8883	hgsc.bcm.edu	37	16	66857505	66857505	+	Splice_Site	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	66857505	T	C	66857505	5	2	656	1	0	0	0	0	0	0	1	0	10146	1623	56	3	1420	3	NAE1	16	66857505	Splice_Site	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	5005955	66857505	23497248	103	39551											
CDT1	81620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	88872437	88872437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	88872437	G	A	88872437	3	1	656	1	0	0	0	0	1	0	0	0	3182	1117	39	1	863	1	CDT1	16	88872437	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	22014932	88872437	1482316	104	39552											
DLG4	1742	bcgsc.ca	37	17	7100206	7100206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	7100206	C	T	7100206	3	4	656	1	0	0	0	0	1	0	0	0	4559	652	23	1	1269	1	DLG4	17	7100206	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		7100206	74095004	105	39553											
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	12016635	12016635	+	Silent	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	12016635	T	C	12016635	2	2	656	1	0	0	0	0	0	0	0	1	9246	1509	53	3		3	MAP2K4	17	12016635	Silent	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	4916429	12016635	69178575	106	39554											
NAGLU	4669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40695935	40695935	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	40695935	C	T	40695935	2	4	656	1	0	0	0	0	0	0	0	1	10150	912	32	2		2	NAGLU	17	40695935	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	28679300	40695935	40499275	107	39555											
LSM12	124801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42117589	42117589	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	42117589	C	T	42117589	2	4	656	1	0	0	0	0	0	0	0	1	9060	796	28	2		2	LSM12	17	42117589	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	1421654	42117589	39077621	108	39556											
HEATR6	63897	hgsc.bcm.edu	37	17	58156270	58156270	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	58156270	A	G	58156270	2	3	656	1	0	0	0	0	0	0	0	1	7040	175	7	3		3	HEATR6	17	58156270	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	16038681	58156270	23038940	109	39557											
ERN1	2081	hgsc.bcm.edu	37	17	62133043	62133043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	62133043	T	C	62133043	3	2	656	1	0	0	0	0	1	0	0	0	5239	1667	58	3	1309	3	ERN1	17	62133043	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	3976773	62133043	19062167	110	39558											
AMH	268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2249551	2249551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	2249551	G	T	2249551	3	4	656	1	0	0	0	0	1	0	0	0	572	1232	43	4	222	4	AMH	19	2249551	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		2249551	56879432	111	39559											
CLEC4M	10332	hgsc.bcm.edu	37	19	7832420	7832420	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	7832420	A	T	7832420	3	4	656	1	0	0	0	0	1	0	0	0	3520	275	10	5	998	5	CLEC4M	19	7832420	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	5582869	7832420	51296563	112	39560											
ADAMTS10	81794	hgsc.bcm.edu	37	19	8645860	8645860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	8645860	A	G	8645860	3	3	656	1	0	0	0	0	1	0	0	0	256	420	15	3	86	3	ADAMTS10	19	8645860	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	813440	8645860	50483123	113	39561											
CD97	976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14518917	14518918	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	14518918	-	A	14518917	7	5	656	1	0	1	1	0	0	0	0	0	3051	838	29	0	2570	0	CD97	19	14518917	Frame_Shift_Ins	INS	-	TCGA-IZ-8196-01A-11D-2396-08	5873057	14518917	44610066	114	39562											
DHX34	9704	hgsc.bcm.edu	37	19	47856881	47856881	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	47856881	C	G	47856881	4	3	656	1	0	0	0	0	0	1	0	0	4509	518	18	4	596	4	DHX34	19	47856881	Nonsense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	33337964	47856881	11272102	115	39563											
SNPH	9751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1286555	1286555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	1286555	C	T	1286555	3	4	656	1	0	0	0	0	1	0	0	0	14863	759	27	1	1356	1	SNPH	20	1286555	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		1286555	61738965	116	39564											
LSM14B	149986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	60705292	60705292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	60705292	G	A	60705292	3	1	656	1	0	0	0	0	1	0	0	0	9062	971	34	2	631	2	LSM14B	20	60705292	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	59418737	60705292	2320228	117	39565											
CABLES2	81928	hgsc.bcm.edu	37	20	60982024	60982024	+	Silent	SNP	C	C	T	rs146975578		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	T	60982024	C	T	60982024	2	4	656	1	0	0	0	0	0	0	0	1	2532	697	25	2		2	CABLES2	20	60982024	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	276732	60982024	2043496	118	39566											
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37626086	37626086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	37626086	G	A	37626086	3	1	656	1	0	0	0	0	1	0	0	0	4710	1029	36	2	5224	2	DOPEY2	21	37626086	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		37626086	10503809	119	39567											
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	40641908	40641908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	40641908	T	A	40641908	3	1	656	1	0	0	0	0	1	0	0	0	1527	1493	52	5	5866	5	BRWD1	21	40641908	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	3015822	40641908	7487987	120	39568											
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44152003	44152003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	44152003	A	G	44152003	3	3	656	1	0	0	0	0	1	0	0	0	11662	304	11	3	484	3	PDE9A	21	44152003	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	3510095	44152003	3977892	121	39569											
COL6A1	1291	hgsc.bcm.edu	37	21	47421874	47421874	+	Splice_Site	SNP	G	G	A	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	A	47421874	G	A	47421874	5	1	656	1	0	0	0	0	0	0	1	0	3701	1043	36	2	2078	2	COL6A1	21	47421874	Splice_Site	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	3269871	47421874	708021	122	39570											
GGT1	2678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	25023938	25023938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	25023938	T	C	25023938	3	2	656	1	0	0	0	0	1	0	0	0	6368	1435	50	3	1362	3	GGT1	22	25023938	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08		25023938	26280628	123	39571											
CHKB	1120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	51018475	51018475	+	Silent	SNP	A	A	C	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	C	51018475	A	C	51018475	2	2	656	1	0	0	0	0	0	0	0	1	3350	1	1	5		5	CHKB	22	51018475	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	25994537	51018475	286091	124	39572											
HUWE1	10075	hgsc.bcm.edu	37	X	53563131	53563131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	G	53563131	A	G	53563131	3	3	656	1	0	0	0	0	1	0	0	0	7468	420	15	3	636	3	HUWE1	23	53563131	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		53563131	101707429	125	39573											
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2418423	2418423	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	2418423	G	A	2418423	2	1	657	1	0	0	0	0	0	0	0	1	12045	1190	42	2		2	PLCH2	1	2418423	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		2418423	246832198	1	39574											
PER3	8863	broad.mit.edu	37	1	7854051	7854051	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	7854051	T	C	7854051	2	2	657	1	0	0	0	0	0	0	0	1	11738	1596	56	3		3	PER3	1	7854051	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	5435628	7854051	241396570	2	39575											
CASZ1	54897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10713663	10713663	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	10713663	G	A	10713663	2	1	657	1	0	0	0	0	0	0	0	1	2687	1219	43	2		2	CASZ1	1	10713663	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	2859612	10713663	238536958	3	39576											
CASZ1	54897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10714628	10714628	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	10714628	G	A	10714628	2	1	657	1	0	0	0	0	0	0	0	1	2687	1372	48	2		2	CASZ1	1	10714628	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	965	10714628	238535993	4	39577											
KDM1A	23028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	23380289	23380289	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	23380289	G	A	23380289	2	1	657	1	0	0	0	0	0	0	0	1	8129	1277	45	2		2	KDM1A	1	23380289	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	12665661	23380289	225870332	5	39578											
WDR65	149465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	43675436	43675439	+	Frame_Shift_Del	DEL	TTGA	TTGA	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	TTGA	TTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	43675439	TTGA	-	43675436	7	5	657	1	0	1	0	1	0	0	0	0	17328	1841	64	0	1816	0	WDR65	1	43675436	Frame_Shift_Del	DEL	TTGA	TCGA-IZ-A6M8-01A-11D-A31X-10	20295147	43675436	205575185	6	39579											
TESK2	10420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45812448	45812448	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	45812448	A	T	45812448	3	4	657	1	0	0	0	0	1	0	0	0	15780	14	1	5	931	5	TESK2	1	45812448	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	2137012	45812448	203438173	7	39580											
IPP	3652	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46206860	46206860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	46206860	G	A	46206860	3	1	657	1	0	0	0	0	1	0	0	0	7807	942	33	2	1447	2	IPP	1	46206860	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	394412	46206860	203043761	8	39581											
ELTD1	64123	hgsc.bcm.edu;bcgsc.ca	37	1	79470814	79470814	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	79470814	C	-	79470814	7	5	657	1	0	1	0	1	0	0	0	0	5086	855	30	0	2015	0	ELTD1	1	79470814	Frame_Shift_Del	DEL	C	TCGA-IZ-A6M8-01A-11D-A31X-10	33263954	79470814	169779807	9	39582											
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85506767	85506767	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	85506767	C	G	85506767	3	3	657	1	0	0	0	0	1	0	0	0	9404	855	30	4	1383	4	MCOLN3	1	85506767	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	6035953	85506767	163743854	10	39583											
TRIM45	80263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117660955	117660955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	117660955	T	G	117660955	3	3	657	1	0	0	0	0	1	0	0	0	16532	1493	52	5	839	5	TRIM45	1	117660955	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	32154188	117660955	131589666	11	39584											
CHD1L	9557	hgsc.bcm.edu	37	1	146747129	146747130	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	146747130	-	A	146747129	7	5	657	1	0	1	1	0	0	0	0	0	3326	477	17	0	1433	0	CHD1L	1	146747129	Frame_Shift_Ins	INS	-	TCGA-IZ-A6M8-01A-11D-A31X-10	29086174	146747129	102503492	12	39585											
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150900339	150900347	+	In_Frame_Del	DEL	AGATGGATT	AGATGGATT	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	AGATGGATT	AGATGGATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	150900347	AGATGGATT	-	150900339	7	5	657	1	0	1	0	1	0	0	0	0	14151	72	3	0	151	0	SETDB1	1	150900339	In_Frame_Del	DEL	AGATGGATT	TCGA-IZ-A6M8-01A-11D-A31X-10	4153210	150900339	98350282	13	39586											
ABL2	27	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	179076969	179076969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	179076969	G	T	179076969	3	4	657	1	0	0	0	0	1	0	0	0	93	1029	36	4	119	4	ABL2	1	179076969	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	28176630	179076969	70173652	14	39587											
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200378264	200378264	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	200378264	C	T	200378264	2	4	657	1	0	0	0	0	0	0	0	1	17830	796	28	2		2	ZNF281	1	200378264	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	21301295	200378264	48872357	15	39588											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	225600280	225600280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	225600280	A	C	225600280	3	2	657	1	0	0	0	0	1	0	0	0	8659	98	4	5	915	5	LBR	1	225600280	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	25222016	225600280	23650341	16	39589											
SULT6B1	391365	hgsc.bcm.edu;bcgsc.ca	37	2	37414574	37414575	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	37414575	-	T	37414574	7	5	657	1	0	1	1	0	0	0	0	0	15396	449	16	0	699	0	SULT6B1	2	37414574	Frame_Shift_Ins	INS	-	TCGA-IZ-A6M8-01A-11D-A31X-10		37414574	205784799	17	39590											
SOS1	6654	bcgsc.ca	37	2	39284009	39284009	+	Splice_Site	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	39284009	T	C	39284009	5	2	657	1	0	0	0	0	0	0	1	0	14949	1594	55	3	3737	3	SOS1	2	39284009	Splice_Site	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	1869435	39284009	203915364	18	39591											
GMCL1	64395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70096993	70096993	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	70096993	T	G	70096993	3	3	657	1	0	0	0	0	1	0	0	0	6492	1841	64	5	1407	5	GMCL1	2	70096993	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	30812984	70096993	173102380	19	39592											
PCDP1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	120362785	120362785	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	120362785	A	C	120362785	3	2	657	1	0	0	0	0	1	0	0	0	11579	11	1	5	205	5	PCDP1	2	120362785	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	50265792	120362785	122836588	20	39593											
MKI67IP	84365	bcgsc.ca	37	2	122494414	122494414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	122494414	A	G	122494414	3	3	657	1	0	0	0	0	1	0	0	0	9606	246	9	3	896	3	MKI67IP	2	122494414	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	2131629	122494414	120704959	21	39594											
SCN1A	6323	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166908235	166908235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	166908235	C	A	166908235	3	1	657	1	0	0	0	0	1	0	0	0	13927	913	32	4	5155	4	SCN1A	2	166908235	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	44413821	166908235	76291138	22	39595											
IHH	3549	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219920296	219920296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	219920296	A	G	219920296	3	3	657	1	0	0	0	0	1	0	0	0	7614	246	9	3	370	3	IHH	2	219920296	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	53012061	219920296	23279077	23	39596											
PER2	8864	broad.mit.edu	37	2	239186362	239186362	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	239186362	C	T	239186362	2	4	657	1	0	0	0	0	0	0	0	1	11737	639	23	1		1	PER2	2	239186362	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	19266066	239186362	4013011	24	39597											
PTPN23	25930	hgsc.bcm.edu;bcgsc.ca	37	3	47452317	47452317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	47452317	C	G	47452317	3	3	657	1	0	0	0	0	1	0	0	0	12801	652	23	4	3107	4	PTPN23	3	47452317	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10		47452317	150570113	25	39598											
RNF123	63891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49737921	49737921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	49737921	A	G	49737921	3	3	657	1	0	0	0	0	1	0	0	0	13446	333	12	3	1177	3	RNF123	3	49737921	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	2285604	49737921	148284509	26	39599											
IL17RD	54756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57136553	57136553	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	57136553	C	T	57136553	2	4	657	1	0	0	0	0	0	0	0	1	7649	639	23	1		1	IL17RD	3	57136553	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	7398632	57136553	140885877	27	39600											
HSPBAP1	79663	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122471457	122471457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	122471457	A	G	122471457	3	3	657	1	0	0	0	0	1	0	0	0	7432	449	16	3	672	3	HSPBAP1	3	122471457	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	65334904	122471457	75550973	28	39601											
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132207851	132207851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	132207851	T	C	132207851	3	2	657	1	0	0	0	0	1	0	0	0	4634	1841	64	3	3572	3	DNAJC13	3	132207851	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	9736394	132207851	65814579	29	39602											
WHSC1	7468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1977074	1977074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	1977074	G	C	1977074	3	2	657	1	0	0	0	0	1	0	0	0	17374	1261	44	4	3718	4	WHSC1	4	1977074	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		1977074	189177202	30	39603											
WDR19	57728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39205336	39205336	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	39205336	A	C	39205336	3	2	657	1	0	0	0	0	1	0	0	0	17291	11	1	5	623	5	WDR19	4	39205336	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	37228262	39205336	151948940	31	39604											
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56737307	56737307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	56737307	A	C	56737307	3	2	657	1	0	0	0	0	1	0	0	0	5303	188	7	5	894	5	EXOC1	4	56737307	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	17531971	56737307	134416969	32	39605											
DSPP	1834	bcgsc.ca	37	4	88536142	88536142	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	88536142	T	C	88536142	2	2	657	1	0	0	0	0	0	0	0	1	4784	1635	57	3		3	DSPP	4	88536142	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	31798835	88536142	102618134	33	39606											
SMARCA5	8467	broad.mit.edu	37	4	144445524	144445524	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	144445524	C	T	144445524	4	4	657	1	0	0	0	0	0	1	0	0	14784	644	23	1	438	1	SMARCA5	4	144445524	Nonsense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	55909382	144445524	46708752	34	39607											
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169315621	169315621	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	169315621	T	A	169315621	3	1	657	1	0	0	0	0	1	0	0	0	4381	1406	49	5	1359	5	DDX60L	4	169315621	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	24870097	169315621	21838655	35	39608											
SSBP2	23635	ucsc.edu	37	5	80724477	80724477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	80724477	C	T	80724477	3	4	657	1	0	0	0	0	1	0	0	0	15192	565	20	2	110	2	SSBP2	5	80724477	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10		80724477	100190783	36	39609											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118479556	118479556	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	118479556	T	C	118479556	2	2	657	1	0	0	0	0	0	0	0	1	4596	1751	61	3		3	DMXL1	5	118479556	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	37755079	118479556	62435704	37	39610											
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	126705695	126705695	+	Splice_Site	SNP	G	G	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	126705695	G	T	126705695	5	4	657	1	0	0	0	0	0	0	1	0	9467	1275	44	4	427	4	MEGF10	5	126705695	Splice_Site	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	8226139	126705695	54209565	38	39611											
HFE	3077	broad.mit.edu;bcgsc.ca	37	6	26091332	26091332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	26091332	G	C	26091332	3	2	657	1	0	0	0	0	1	0	0	0	7088	1246	43	4	346	4	HFE	6	26091332	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		26091332	145023735	39	39612											
PLEKHG1	57480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151161158	151161158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	151161158	C	T	151161158	3	4	657	1	0	0	0	0	1	0	0	0	12075	710	25	2	3342	2	PLEKHG1	6	151161158	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	125069826	151161158	19953909	40	39613											
HEATR2	54919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	769345	769345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	769345	A	C	769345	3	2	657	1	0	0	0	0	1	0	0	0	7035	188	7	5	647	5	HEATR2	7	769345	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10		769345	158369318	41	39614											
SDK1	221935	broad.mit.edu;bcgsc.ca	37	7	4056809	4056809	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	4056809	C	T	4056809	2	4	657	1	0	0	0	0	0	0	0	1	13981	726	26	2		2	SDK1	7	4056809	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	3287464	4056809	155081854	42	39615											
CDK13	8621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	40134339	40134339	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	40134339	T	C	40134339	2	2	657	1	0	0	0	0	0	0	0	1	3131	1509	53	3		3	CDK13	7	40134339	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	36077530	40134339	119004324	43	39616											
PIK3CG	5294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	106508582	106508582	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	106508582	C	-	106508582	7	5	657	1	0	1	0	1	0	0	0	0	11923	506	18	0	578	0	PIK3CG	7	106508582	Frame_Shift_Del	DEL	C	TCGA-IZ-A6M8-01A-11D-A31X-10	66374243	106508582	52630081	44	39617											
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	23294705	23294705	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	23294705	G	A	23294705	2	1	657	1	0	0	0	0	0	0	0	1	5143	1368	48	2		2	ENTPD4	8	23294705	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		23294705	123069317	45	39618											
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	37729061	37729061	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	37729061	G	C	37729061	3	2	657	1	0	0	0	0	1	0	0	0	12906	1174	41	4	604	4	RAB11FIP1	8	37729061	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	14434356	37729061	108634961	46	39619											
EFCAB1	79645	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	49647695	49647695	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	49647695	G	A	49647695	2	1	657	1	0	0	0	0	0	0	0	1	4935	1020	36	2		2	EFCAB1	8	49647695	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	11918634	49647695	96716327	47	39620											
RUNX1T1	862	ucsc.edu;bcgsc.ca	37	8	93088202	93088202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	93088202	A	G	93088202	3	3	657	1	0	0	0	0	1	0	0	0	13760	449	16	3	1790	3	RUNX1T1	8	93088202	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	43440507	93088202	53275820	48	39621											
GRINA	2907	broad.mit.edu	37	8	145065567	145065567	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	145065567	A	C	145065567	3	2	657	1	0	0	0	0	1	0	0	0	6792	217	8	5	178	5	GRINA	8	145065567	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	51977365	145065567	1298455	49	39622											
DOCK8	81704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	441958	441958	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	441958	C	T	441958	2	4	657	1	0	0	0	0	0	0	0	1	4695	900	32	2		2	DOCK8	9	441958	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10		441958	140771473	50	39623											
TAF1L	138474	ucsc.edu;bcgsc.ca	37	9	32632528	32632528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	32632528	A	G	32632528	3	3	657	1	0	0	0	0	1	0	0	0	15535	72	3	3	2434	3	TAF1L	9	32632528	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	32190570	32632528	108580903	51	39624											
SHB	6461	broad.mit.edu	37	9	37956019	37956019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	37956019	A	G	37956019	3	3	657	1	0	0	0	0	1	0	0	0	14281	333	12	3	454	3	SHB	9	37956019	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	5323491	37956019	103257412	52	39625											
PRKACG	5568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	71628289	71628289	+	Silent	SNP	G	G	A	rs140133619	alternate_allele	TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	71628289	G	A	71628289	2	1	657	1	0	0	0	0	0	0	0	1	12509	1140	40	1		1	PRKACG	9	71628289	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	33672270	71628289	69585142	53	39626											
GDA	9615	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	74838062	74838062	+	Silent	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	74838062	A	G	74838062	2	3	657	1	0	0	0	0	0	0	0	1	6313	146	6	3		3	GDA	9	74838062	Silent	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	3209773	74838062	66375369	54	39627											
ZNF462	58499	ucsc.edu;bcgsc.ca	37	9	109688639	109688639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	109688639	G	A	109688639	3	1	657	1	0	0	0	0	1	0	0	0	17938	1319	46	2	2452	2	ZNF462	9	109688639	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	34850577	109688639	31524792	55	39628											
DNM1	1759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130982346	130982346	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	130982346	G	A	130982346	2	1	657	1	0	0	0	0	0	0	0	1	4672	962	34	2		2	DNM1	9	130982346	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	21293707	130982346	10231085	56	39629											
URM1	81605	broad.mit.edu	37	9	131151640	131151640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	131151640	G	T	131151640	3	4	657	1	0	0	0	0	1	0	0	0	17039	1029	36	4	303	4	URM1	9	131151640	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	169294	131151640	10061791	57	39630											
MAMDC4	158056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139748712	139748712	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	139748712	C	T	139748712	2	4	657	1	0	0	0	0	0	0	0	1	9211	900	32	2		2	MAMDC4	9	139748712	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	8597072	139748712	1464719	58	39631											
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	113913352	113913352	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	113913352	G	A	113913352	4	1	657	1	0	0	0	0	0	1	0	0	6595	1124	39	1	47	1	GPAM	10	113913352	Nonsense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		113913352	21621395	59	39632											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	6652589	6652589	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	6652589	T	-	6652589	7	5	657	1	0	1	0	1	0	0	0	0	4289	1609	56	0	6227	0	DCHS1	11	6652589	Frame_Shift_Del	DEL	T	TCGA-IZ-A6M8-01A-11D-A31X-10		6652589	128353927	60	39633											
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18731076	18731076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	18731076	C	A	18731076	3	1	657	1	0	0	0	0	1	0	0	0	7607	912	32	4	1148	4	IGSF22	11	18731076	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	12078487	18731076	116275440	61	39634											
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13768093	13768093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	13768093	T	C	13768093	3	2	657	1	0	0	0	0	1	0	0	0	6787	1464	51	3	2873	3	GRIN2B	12	13768093	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10		13768093	120083802	62	39635											
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53825014	53825014	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	53825014	A	T	53825014	3	4	657	1	0	0	0	0	1	0	0	0	573	69	3	5	1521	5	AMHR2	12	53825014	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	40056921	53825014	80026881	63	39636											
TARBP2	6895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53899840	53899840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	53899840	T	C	53899840	3	2	657	1	0	0	0	0	1	0	0	0	15568	1696	59	3	1043	3	TARBP2	12	53899840	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	74826	53899840	79952055	64	39637											
ATP2B1	490	broad.mit.edu	37	12	90029004	90029004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	90029004	T	C	90029004	3	2	657	1	0	0	0	0	1	0	0	0	1139	1551	54	3	3461	3	ATP2B1	12	90029004	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	36129164	90029004	43822891	65	39638											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123815855	123815855	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	123815855	C	G	123815855	3	3	657	1	0	0	0	0	1	0	0	0	13875	855	30	4	3304	4	SBNO1	12	123815855	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	33786851	123815855	10036040	66	39639											
ZMYM5	9205	bcgsc.ca	37	13	20413049	20413049	+	Silent	SNP	G	G	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	20413049	G	T	20413049	2	4	657	1	0	0	0	0	0	0	0	1	17715	987	35	4		4	ZMYM5	13	20413049	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		20413049	94756829	67	39640											
NBEA	26960	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	35731352	35731352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	35731352	A	G	35731352	3	3	657	1	0	0	0	0	1	0	0	0	10194	449	16	3	2871	3	NBEA	13	35731352	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	15318303	35731352	79438526	68	39641											
SERPINE3	647174	broad.mit.edu	37	13	51922450	51922450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	51922450	A	C	51922450	3	2	657	1	0	0	0	0	1	0	0	0	14126	159	6	5	816	5	SERPINE3	13	51922450	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	16191098	51922450	63247428	69	39642											
TPP2	7174	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103271166	103271166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	103271166	G	T	103271166	3	4	657	1	0	0	0	0	1	0	0	0	16424	1319	46	4	608	4	TPP2	13	103271166	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	51348716	103271166	11898712	70	39643											
ABHD13	84945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	108882148	108882149	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	TT	108882149	GG	TT	108882148	3	4	657	1	0	0	0	0	1	0	0	0	78	1339	47	4	584	4	ABHD13	13	108882148	Missense_Mutation	DNP	GG	TCGA-IZ-A6M8-01A-11D-A31X-10	5610982	108882148	6287730	71	39644											
TTC5	91875	broad.mit.edu;ucsc.edu	37	14	20774052	20774052	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	20774052	T	C	20774052	2	2	657	1	0	0	0	0	0	0	0	1	16723	1490	52	3		3	TTC5	14	20774052	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10		20774052	86575488	72	39645											
SNX6	58533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35062293	35062293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	35062293	C	A	35062293	3	1	657	1	0	0	0	0	1	0	0	0	14919	855	30	4	572	4	SNX6	14	35062293	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	14288241	35062293	72287247	73	39646											
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75019017	75019017	+	Silent	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	75019017	C	G	75019017	2	3	657	1	0	0	0	0	0	0	0	1	9081	842	30	4		4	LTBP2	14	75019017	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	39956724	75019017	32330523	74	39647											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	30019082	30019082	+	Silent	SNP	T	T	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	30019082	T	G	30019082	2	3	657	1	0	0	0	0	0	0	0	1	15941	1799	63	5		5	TJP1	15	30019082	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10		30019082	72512310	75	39648											
TP53BP1	7158	ucsc.edu;bcgsc.ca	37	15	43748739	43748739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	43748739	C	T	43748739	3	4	657	1	0	0	0	0	1	0	0	0	16395	594	21	2	3934	2	TP53BP1	15	43748739	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	13729657	43748739	58782653	76	39649											
HMG20A	10363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77750833	77750833	+	Silent	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	77750833	C	G	77750833	2	3	657	1	0	0	0	0	0	0	0	1	7228	581	21	4		4	HMG20A	15	77750833	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	34002094	77750833	24780559	77	39650											
IREB2	3658	broad.mit.edu	37	15	78758793	78758793	+	Silent	SNP	A	A	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	78758793	A	T	78758793	2	4	657	1	0	0	0	0	0	0	0	1	7833	146	6	5		5	IREB2	15	78758793	Silent	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	1007960	78758793	23772599	78	39651											
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3304171	3304171	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	3304171	T	-	3304171	7	5	657	1	0	1	0	1	0	0	0	0	9466	1722	60	0	1484	0	MEFV	16	3304171	Frame_Shift_Del	DEL	T	TCGA-IZ-A6M8-01A-11D-A31X-10		3304171	87050582	79	39652											
SF3B3	23450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70605581	70605581	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	70605581	G	A	70605581	2	1	657	1	0	0	0	0	0	0	0	1	14165	1277	45	2		2	SF3B3	16	70605581	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	67301410	70605581	19749172	80	39653											
TRPV3	162514	broad.mit.edu	37	17	3438998	3438998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	3438998	G	T	3438998	3	4	657	1	0	0	0	0	1	0	0	0	16609	1087	38	4	1767	4	TRPV3	17	3438998	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		3438998	77756212	81	39654											
CORO6	84940	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27948314	27948314	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	27948314	G	A	27948314	2	1	657	1	0	0	0	0	0	0	0	1	3760	1277	45	2		2	CORO6	17	27948314	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	24509316	27948314	53246896	82	39655											
KRTAP3-2	83897	bcgsc.ca	37	17	39155883	39155883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	39155883	G	C	39155883	3	2	657	1	0	0	0	0	1	0	0	0	8553	1174	41	4	77	4	KRTAP3-2	17	39155883	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	11207569	39155883	42039327	83	39656											
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	56676917	56676918	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	56676918	GA	-	56676917	7	5	657	1	0	1	0	1	0	0	0	0	15790	1174	41	0	2766	0	TEX14	17	56676917	Frame_Shift_Del	DEL	GA	TCGA-IZ-A6M8-01A-11D-A31X-10	17521034	56676917	24518293	84	39657											
ACOX1	51	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73953542	73953542	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	73953542	C	G	73953542	3	3	657	1	0	0	0	0	1	0	0	0	158	623	22	4	1490	4	ACOX1	17	73953542	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	17276625	73953542	7241668	85	39658											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80047603	80047603	+	Splice_Site	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	G	80047603	C	G	80047603	5	3	657	1	0	0	0	0	0	0	1	0	5690	695	24	4	5793	4	FASN	17	80047603	Splice_Site	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	6094061	80047603	1147607	86	39659											
ANKRD29	147463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	21214112	21214112	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	21214112	T	-	21214112	7	5	657	1	0	1	0	1	0	0	0	0	657	1681	58	0	597	0	ANKRD29	18	21214112	Frame_Shift_Del	DEL	T	TCGA-IZ-A6M8-01A-11D-A31X-10		21214112	56863136	87	39660	504	2									
ANKRD29	147463	bcgsc.ca	37	18	21214114	21214114	+	Splice_Site	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	21214114	C	T	21214114	5	4	657	1	0	0	0	0	0	0	1	0	657	695	24	2	599	2	ANKRD29	18	21214114	Splice_Site	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	2	21214114	56863134	88	39661	504	2									
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9057871	9057871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	9057871	G	A	9057871	3	1	657	1	0	0	0	0	1	0	0	0	9980	1174	41	2	14276	2	MUC16	19	9057871	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		9057871	50071112	89	39662											
CARM1	10498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11019856	11019856	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	11019856	G	A	11019856	2	1	657	1	0	0	0	0	0	0	0	1	2657	1306	46	2		2	CARM1	19	11019856	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	1961985	11019856	48109127	90	39663											
FCGBP	8857	broad.mit.edu	37	19	40366441	40366444	+	Frame_Shift_Del	DEL	CGCA	CGCA	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	CGCA	CGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	40366444	CGCA	-	40366441	7	5	657	1	0	1	0	1	0	0	0	0	5785	768	27	0	2452	0	FCGBP	19	40366441	Frame_Shift_Del	DEL	CGCA	TCGA-IZ-A6M8-01A-11D-A31X-10	29346585	40366441	18762542	91	39664											
ZNF45	7596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44419046	44419046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	C	44419046	A	C	44419046	3	2	657	1	0	0	0	0	1	0	0	0	17933	101	4	5	1510	5	ZNF45	19	44419046	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	4052605	44419046	14709937	92	39665											
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52941044	52941044	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	52941044	T	A	52941044	3	1	657	1	0	0	0	0	1	0	0	0	17985	1490	52	5	384	5	ZNF534	19	52941044	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	8521998	52941044	6187939	93	39666											
CRNKL1	51340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	20033152	20033152	+	Silent	SNP	G	G	A	rs140622884		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	20033152	G	A	20033152	2	1	657	1	0	0	0	0	0	0	0	1	3893	987	35	2		2	CRNKL1	20	20033152	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		20033152	42992368	94	39667											
TM9SF4	9777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30730877	30730877	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	T	30730877	C	T	30730877	2	4	657	1	0	0	0	0	0	0	0	1	15992	883	31	1		1	TM9SF4	20	30730877	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	10697725	30730877	32294643	95	39668											
CDH4	1002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60427908	60427908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	60427908	C	A	60427908	3	1	657	1	0	0	0	0	1	0	0	0	3114	825	29	4	853	4	CDH4	20	60427908	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	29697031	60427908	2597612	96	39669											
PRODH	5625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18909899	18909899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	18909899	C	A	18909899	3	1	657	1	0	0	0	0	1	0	0	0	12558	623	22	4	966	4	PRODH	22	18909899	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10		18909899	32394667	97	39670											
KDM6A	7403	hgsc.bcm.edu;bcgsc.ca	37	X	44918293	44918293	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	-	44918293	T	-	44918293	7	5	657	1	0	1	0	1	0	0	0	0	8144	1596	56	0	960	0	KDM6A	23	44918293	Frame_Shift_Del	DEL	T	TCGA-IZ-A6M8-01A-11D-A31X-10		44918293	110352267	98	39671											
ATP7A	538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	77268391	77268391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	A	77268391	T	A	77268391	3	1	657	1	0	0	0	0	1	0	0	0	1190	1638	57	5	2222	5	ATP7A	23	77268391	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	32350098	77268391	78002169	99	39672											
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9809529	9809529	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	9809529	G	A	9809529	2	1	658	1	0	0	0	0	0	0	0	1	3563	1252	44	2		2	CLSTN1	1	9809529	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		9809529	239441092	1	39673											
CSDE1	7812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115277116	115277116	+	Missense_Mutation	SNP	T	T	A	rs200868850	alternate_allele	TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	115277116	T	A	115277116	3	1	658	1	0	0	0	0	1	0	0	0	3931	1406	49	5	1923	5	CSDE1	1	115277116	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	105467587	115277116	133973505	2	39674											
POLR3C	10623	broad.mit.edu	37	1	145608259	145608259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	145608259	G	T	145608259	3	4	658	1	0	0	0	0	1	0	0	0	12237	1368	48	4	1214	4	POLR3C	1	145608259	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	30331143	145608259	103642362	3	39675											
ACP6	51205	broad.mit.edu	37	1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	rs201678741		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	147142085	A	C	147142085	3	2	658	1	0	0	0	0	1	0	0	0	165	159	6	5	1240	5	ACP6	1	147142085	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	1533826	147142085	102108536	4	39676											
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150443766	150443766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	150443766	A	C	150443766	3	2	658	1	0	0	0	0	1	0	0	0	13630	304	11	5	2384	5	RPRD2	1	150443766	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	3301681	150443766	98806855	5	39677											
RPTN	126638	broad.mit.edu	37	1	152128054	152128054	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	152128054	T	C	152128054	2	2	658	1	0	0	0	0	0	0	0	1	13677	1838	64	3		3	RPTN	1	152128054	Silent	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	1684288	152128054	97122567	6	39678											
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	180885446	180885457	+	In_Frame_Del	DEL	TCCCAGGGTATG	TCCCAGGGTATG	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	TCCCAGGGTATG	TCCCAGGGTATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	-	180885457	TCCCAGGGTATG	-	180885446	7	5	658	1	0	1	0	1	0	0	0	0	8255	1538	54	0	213	0	KIAA1614	1	180885446	In_Frame_Del	DEL	TCCCAGGGTATG	TCGA-IZ-A6M9-01A-11D-A31X-10	28757392	180885446	68365175	7	39679											
KDM5B	10765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202701002	202701002	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	202701002	A	C	202701002	4	2	658	1	0	0	0	0	0	1	0	0	8141	108	4	5	675	5	KDM5B	1	202701002	Nonsense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	21815556	202701002	46549619	8	39680											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208234136	208234136	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	208234136	A	T	208234136	3	4	658	1	0	0	0	0	1	0	0	0	12127	333	12	5	3131	5	PLXNA2	1	208234136	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	5533134	208234136	41016485	9	39681	505	2									
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208234142	208234142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	208234142	A	G	208234142	3	3	658	1	0	0	0	0	1	0	0	0	12127	159	6	3	3137	3	PLXNA2	1	208234142	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	6	208234142	41016479	10	39682	505	2									
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214557537	214557537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	214557537	C	T	214557537	3	4	658	1	0	0	0	0	1	0	0	0	12794	797	28	2	1930	2	PTPN14	1	214557537	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	6323395	214557537	34693084	11	39683											
DNAJC5G	285126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27500675	27500675	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	27500675	T	A	27500675	3	1	658	1	0	0	0	0	1	0	0	0	4654	1580	55	5	173	5	DNAJC5G	2	27500675	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		27500675	215698698	12	39684											
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133403162	133403162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	133403162	C	A	133403162	3	1	658	1	0	0	0	0	1	0	0	0	6700	827	29	4	1351	4	GPR39	2	133403162	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	105902487	133403162	109796211	13	39685											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152382499	152382499	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	152382499	G	A	152382499	2	1	658	1	0	0	0	0	0	0	0	1	10309	1277	45	2		2	NEB	2	152382499	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	18979337	152382499	90816874	14	39686											
AGPS	8540	broad.mit.edu;bcgsc.ca	37	2	178301756	178301756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	178301756	G	T	178301756	3	4	658	1	0	0	0	0	1	0	0	0	394	1058	37	4	629	4	AGPS	2	178301756	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	25919257	178301756	64897617	15	39687											
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	189867767	189867767	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	189867767	C	T	189867767	2	4	658	1	0	0	0	0	0	0	0	1	3690	610	22	2		2	COL3A1	2	189867767	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	11566011	189867767	53331606	16	39688											
NBEAL1	65065	ucsc.edu;bcgsc.ca	37	2	204045155	204045155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	204045155	C	T	204045155	3	4	658	1	0	0	0	0	1	0	0	0	10195	797	28	2	6590	2	NBEAL1	2	204045155	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	14177388	204045155	39154218	17	39689											
PRKAR2A	5576	broad.mit.edu	37	3	48884918	48884918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	48884918	T	G	48884918	3	3	658	1	0	0	0	0	1	0	0	0	12515	1696	59	5	1146	5	PRKAR2A	3	48884918	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		48884918	149137512	18	39690											
GLT8D1	55830	bcgsc.ca	37	3	52731772	52731772	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	52731772	G	T	52731772	4	4	658	1	0	0	0	0	0	1	0	0	6476	1372	48	4	849	4	GLT8D1	3	52731772	Nonsense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	3846854	52731772	145290658	19	39691											
MAGI1	9223	broad.mit.edu	37	3	66023695	66023695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	66023695	C	T	66023695	3	4	658	1	0	0	0	0	1	0	0	0	9197	536	19	1	4425	1	MAGI1	3	66023695	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	13291923	66023695	131998735	20	39692											
LRIG1	26018	broad.mit.edu	37	3	66433543	66433543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	66433543	C	T	66433543	3	4	658	1	0	0	0	0	1	0	0	0	8951	739	26	2	947	2	LRIG1	3	66433543	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	409848	66433543	131588887	21	39693											
FBXO40	51725	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121345735	121345735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	121345735	C	T	121345735	3	4	658	1	0	0	0	0	1	0	0	0	5756	594	21	2	2118	2	FBXO40	3	121345735	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	54912192	121345735	76676695	22	39694											
FAIM	55179	broad.mit.edu	37	3	138341182	138341182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	138341182	G	T	138341182	3	4	658	1	0	0	0	0	1	0	0	0	5379	1020	36	4	424	4	FAIM	3	138341182	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	16995447	138341182	59681248	23	39695											
FGFRL1	53834	broad.mit.edu;bcgsc.ca	37	4	1018104	1018104	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	1018104	A	C	1018104	3	2	658	1	0	0	0	0	1	0	0	0	5876	275	10	5	742	5	FGFRL1	4	1018104	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10		1018104	190136172	24	39696											
FAM193A	8603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2632748	2632748	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	2632748	T	A	2632748	3	1	658	1	0	0	0	0	1	0	0	0	5528	1551	54	5	19	5	FAM193A	4	2632748	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	1614644	2632748	188521528	25	39697											
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	54343069	54343069	+	Silent	SNP	T	T	C	rs151307935	alternate_allele	TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	54343069	T	C	54343069	2	2	658	1	0	0	0	0	0	0	0	1	8872	1451	51	3		3	LNX1	4	54343069	Silent	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	51710321	54343069	136811207	26	39698											
CEP135	9662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56876035	56876035	+	Missense_Mutation	SNP	A	A	G	rs148279836		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	56876035	A	G	56876035	3	3	658	1	0	0	0	0	1	0	0	0	3249	130	5	3	2541	3	CEP135	4	56876035	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	2532966	56876035	134278241	27	39699											
CEP135	9662	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56885619	56885619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	56885619	C	T	56885619	3	4	658	1	0	0	0	0	1	0	0	0	3249	797	28	2	3199	2	CEP135	4	56885619	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	9584	56885619	134268657	28	39700											
LRRC14B	389257	broad.mit.edu;bcgsc.ca	37	5	194906	194906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	194906	C	T	194906	3	4	658	1	0	0	0	0	1	0	0	0	8976	739	26	2	989	2	LRRC14B	5	194906	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		194906	180720354	29	39701											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38825504	38825504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	38825504	A	G	38825504	3	3	658	1	0	0	0	0	1	0	0	0	4609	449	16	3	5443	3	DNAH8	6	38825504	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10		38825504	132289563	30	39702											
FBXO5	26271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153293427	153293427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	153293427	G	A	153293427	4	1	658	1	0	0	0	0	0	1	0	0	5765	1066	37	1	279	1	FBXO5	6	153293427	Nonsense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	114467923	153293427	17821640	31	39703											
EZR	7430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	159188095	159188095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	159188095	G	C	159188095	3	2	658	1	0	0	0	0	1	0	0	0	5337	962	34	4	152	4	EZR	6	159188095	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	5894668	159188095	11926972	32	39704											
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	170871004	G	A	170871004	2	1	658	1	0	0	0	0	0	0	0	1	15656	962	34	2		2	TBP	6	170871004	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	11682909	170871004	244063	33	39705											
DNAH11	8701	broad.mit.edu	37	7	21788203	21788203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	21788203	G	A	21788203	3	1	658	1	0	0	0	0	1	0	0	0	4601	1087	38	1	8744	1	DNAH11	7	21788203	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		21788203	137350460	34	39706											
ZNF273	10793	broad.mit.edu;bcgsc.ca	37	7	64389208	64389214	+	Frame_Shift_Del	DEL	TTACTAA	TTACTAA	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	TTACTAA	TTACTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	-	64389214	TTACTAA	-	64389208	7	5	658	1	0	1	0	1	0	0	0	0	17820	1609	56	0	1516	0	ZNF273	7	64389208	Frame_Shift_Del	DEL	TTACTAA	TCGA-IZ-A6M9-01A-11D-A31X-10	42601005	64389208	94749455	35	39707	506	2									
ZNF273	10793	bcgsc.ca	37	7	64389216	64389216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	64389216	C	T	64389216	3	4	658	1	0	0	0	0	1	0	0	0	17820	478	17	2	1524	2	ZNF273	7	64389216	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	8	64389216	94749447	36	39708	506	2									
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	70255844	70255844	+	Silent	SNP	A	A	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	70255844	A	G	70255844	2	3	658	1	0	0	0	0	0	0	0	1	1225	175	7	3		3	AUTS2	7	70255844	Silent	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	5866628	70255844	88882819	37	39709											
GTF2IRD2	84163	broad.mit.edu	37	7	74211898	74211898	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	74211898	G	C	74211898	3	2	658	1	0	0	0	0	1	0	0	0	6876	932	33	4	900	4	GTF2IRD2	7	74211898	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	3956054	74211898	84926765	38	39710											
NUP205	23165	broad.mit.edu	37	7	135307641	135307641	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	135307641	C	T	135307641	4	4	658	1	0	0	0	0	0	1	0	0	10766	876	31	1	4569	1	NUP205	7	135307641	Nonsense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	61095743	135307641	23831022	39	39711											
RP1L1	94137	broad.mit.edu	37	8	10470455	10470455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	10470455	G	A	10470455	3	1	658	1	0	0	0	0	1	0	0	0	13546	1115	39	1	6053	1	RP1L1	8	10470455	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		10470455	135893567	40	39712											
MTFR1	9650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	66617127	66617127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	66617127	A	C	66617127	3	2	658	1	0	0	0	0	1	0	0	0	9932	11	1	5	494	5	MTFR1	8	66617127	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	56146672	66617127	79746895	41	39713											
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70488224	70488224	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	70488224	C	G	70488224	3	3	658	1	0	0	0	0	1	0	0	0	15382	477	17	4	198	4	SULF1	8	70488224	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	3871097	70488224	75875798	42	39714											
DPYS	1807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	105393497	105393499	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	-	105393499	CTT	-	105393497	7	5	658	1	0	1	0	1	0	0	0	0	4748	565	20	0	74	0	DPYS	8	105393497	In_Frame_Del	DEL	CTT	TCGA-IZ-A6M9-01A-11D-A31X-10	34905273	105393497	40970525	43	39715											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	114326898	114326898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	114326898	A	C	114326898	3	2	658	1	0	0	0	0	1	0	0	0	3948	446	16	5	11100	5	CSMD3	8	114326898	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	8933401	114326898	32037124	44	39716											
SIGMAR1	10280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	34637563	34637563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	34637563	C	G	34637563	3	3	658	1	0	0	0	0	1	0	0	0	14329	564	20	4	555	4	SIGMAR1	9	34637563	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		34637563	106575868	45	39717											
TMOD1	7111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100286582	100286582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	100286582	G	A	100286582	3	1	658	1	0	0	0	0	1	0	0	0	16245	1174	41	2	114	2	TMOD1	9	100286582	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	65649019	100286582	40926849	46	39718											
CTNNAL1	8727	broad.mit.edu	37	9	111775718	111775718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	111775718	G	T	111775718	3	4	658	1	0	0	0	0	1	0	0	0	4017	1203	42	4	2275	4	CTNNAL1	9	111775718	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	11489136	111775718	29437713	47	39719											
PKN3	29941	broad.mit.edu	37	9	131469297	131469297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	131469297	G	A	131469297	3	1	658	1	0	0	0	0	1	0	0	0	11988	1203	42	2	664	2	PKN3	9	131469297	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	19693579	131469297	9744134	48	39720											
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	133556745	133556745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	133556745	C	T	133556745	3	4	658	1	0	0	0	0	1	0	0	0	12463	594	21	2	811	2	PRDM12	9	133556745	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	2087448	133556745	7656686	49	39721											
GDI2	2665	hgsc.bcm.edu;bcgsc.ca	37	10	5855180	5855180	+	Silent	SNP	C	C	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	5855180	C	A	5855180	2	1	658	1	0	0	0	0	0	0	0	1	6328	813	29	4		4	GDI2	10	5855180	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		5855180	129679567	50	39722											
ZNF33B	7582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43088707	43088707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	43088707	T	C	43088707	3	2	658	1	0	0	0	0	1	0	0	0	17867	1464	51	3	649	3	ZNF33B	10	43088707	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	37233527	43088707	92446040	51	39723											
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105795252	105795252	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	105795252	T	G	105795252	3	3	658	1	0	0	0	0	1	0	0	0	3676	1551	54	5	1037	5	COL17A1	10	105795252	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	62706545	105795252	29739495	52	39724											
MUC2	4583	broad.mit.edu	37	11	1092630	1092630	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	1092630	T	C	1092630	2	2	658	1	0	0	0	0	0	0	0	1	9982	1538	54	3		3	MUC2	11	1092630	Silent	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		1092630	133913886	53	39725											
SMPD1	6609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6412728	6412728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	6412728	G	A	6412728	3	1	658	1	0	0	0	0	1	0	0	0	14817	1261	44	2	439	2	SMPD1	11	6412728	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	5320098	6412728	128593788	54	39726											
PEX16	9409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	45936221	45936221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	45936221	G	A	45936221	3	1	658	1	0	0	0	0	1	0	0	0	11750	1232	43	2	652	2	PEX16	11	45936221	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	39523493	45936221	89070295	55	39727											
OR5J2	282775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55944703	55944703	+	Missense_Mutation	SNP	G	G	A	rs143728764		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	55944703	G	A	55944703	3	1	658	1	0	0	0	0	1	0	0	0	11172	1117	39	1	612	1	OR5J2	11	55944703	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	10008482	55944703	79061813	56	39728											
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111953315	111953315	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	-	111953315	C	-	111953315	7	5	658	1	0	1	0	1	0	0	0	0	1652	477	17	0	519	0	C11orf57	11	111953315	Frame_Shift_Del	DEL	C	TCGA-IZ-A6M9-01A-11D-A31X-10	56008612	111953315	23053201	57	39729											
ITPR2	3709	broad.mit.edu	37	12	26714818	26714818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	26714818	G	T	26714818	3	4	658	1	0	0	0	0	1	0	0	0	7928	1194	42	4	3499	4	ITPR2	12	26714818	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		26714818	107137077	58	39730											
DNAJC22	79962	bcgsc.ca	37	12	49745201	49745201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	49745201	G	T	49745201	3	4	658	1	0	0	0	0	1	0	0	0	4643	991	35	4	948	4	DNAJC22	12	49745201	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	23030383	49745201	84106694	59	39731											
R3HDM2	22864	broad.mit.edu	37	12	57663626	57663626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	57663626	G	T	57663626	3	4	658	1	0	0	0	0	1	0	0	0	12901	1232	43	4	1516	4	R3HDM2	12	57663626	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	7918425	57663626	76188269	60	39732											
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123465766	123465770	+	Frame_Shift_Del	DEL	AGAGC	AGAGC	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	AGAGC	AGAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	-	123465770	AGAGC	-	123465766	7	5	658	1	0	1	0	1	0	0	0	0	943	72	3	0	455	0	ARL6IP4	12	123465766	Frame_Shift_Del	DEL	AGAGC	TCGA-IZ-A6M9-01A-11D-A31X-10	65802140	123465766	10386129	61	39733											
NUFIP1	26747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	45563329	45563329	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	-	45563329	G	-	45563329	7	5	658	1	0	1	0	1	0	0	0	0	10755	1049	37	0	1284	0	NUFIP1	13	45563329	Frame_Shift_Del	DEL	G	TCGA-IZ-A6M9-01A-11D-A31X-10		45563329	69606549	62	39734											
DACH1	1602	broad.mit.edu	37	13	72440446	72440446	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	72440446	G	A	72440446	2	1	658	1	0	0	0	0	0	0	0	1	4222	1310	46	2		2	DACH1	13	72440446	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	26877117	72440446	42729432	63	39735											
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	76395479	76395497	+	Frame_Shift_Del	DEL	AAAGAAGATTCTACCACTT	AAAGAAGATTCTACCACTT	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	AAAGAAGATTCTACCACTT	AAAGAAGATTCTACCACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	-	76395497	AAAGAAGATTCTACCACTT	-	76395479	7	5	658	1	0	1	0	1	0	0	0	0	8862	131	5	0	2588	0	LMO7	13	76395479	Frame_Shift_Del	DEL	AAAGAAGATTCTACCACTT	TCGA-IZ-A6M9-01A-11D-A31X-10	3955033	76395479	38774399	64	39736											
TMTC4	84899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	101287091	101287091	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	101287091	T	G	101287091	3	3	658	1	0	0	0	0	1	0	0	0	16275	1609	56	5	840	5	TMTC4	13	101287091	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	24891612	101287091	13882787	65	39737											
FBXO34	55030	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55817793	55817793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	55817793	T	A	55817793	3	1	658	1	0	0	0	0	1	0	0	0	5751	1580	55	5	687	5	FBXO34	14	55817793	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		55817793	51531747	66	39738											
ACOT4	122970	broad.mit.edu	37	14	74060593	74060593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	74060593	G	T	74060593	3	4	658	1	0	0	0	0	1	0	0	0	153	1319	46	4	651	4	ACOT4	14	74060593	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	18242800	74060593	33288947	67	39739											
SPTBN5	51332	broad.mit.edu	37	15	42143073	42143073	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	42143073	G	A	42143073	4	1	658	1	0	0	0	0	0	1	0	0	15134	1095	38	1	136	1	SPTBN5	15	42143073	Nonsense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		42143073	60388319	68	39740											
MEGF11	84465	broad.mit.edu	37	15	66250030	66250030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	66250030	C	T	66250030	3	4	658	1	0	0	0	0	1	0	0	0	9468	710	25	2	2048	2	MEGF11	15	66250030	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	24106957	66250030	36281362	69	39741											
WDR90	197335	broad.mit.edu	37	16	707223	707223	+	Splice_Site	SNP	T	T	G	rs78538490		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	707223	T	G	707223	5	3	658	1	0	0	0	0	0	0	1	0	17349	1739	60	5	2553	5	WDR90	16	707223	Splice_Site	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		707223	89647530	70	39742											
ZNF689	115509	broad.mit.edu	37	16	30616114	30616114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	30616114	C	T	30616114	3	4	658	1	0	0	0	0	1	0	0	0	18106	768	27	1	532	1	ZNF689	16	30616114	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	29908891	30616114	59738639	71	39743											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58592566	58592570	+	Frame_Shift_Del	DEL	CAAGA	CAAGA	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CAAGA	CAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	-	58592570	CAAGA	-	58592566	7	5	658	1	0	1	0	1	0	0	0	0	3619	710	25	0	5337	0	CNOT1	16	58592566	Frame_Shift_Del	DEL	CAAGA	TCGA-IZ-A6M9-01A-11D-A31X-10	27976452	58592566	31762187	72	39744											
EDC4	23644	broad.mit.edu;bcgsc.ca	37	16	67913803	67913803	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	67913803	C	T	67913803	2	4	658	1	0	0	0	0	0	0	0	1	4910	709	25	2		2	EDC4	16	67913803	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	9321237	67913803	22440950	73	39745											
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	70163023	70163023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	70163023	A	T	70163023	3	4	658	1	0	0	0	0	1	0	0	0	11696	101	4	5	619	5	PDPR	16	70163023	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	2249220	70163023	20191730	74	39746											
KARS	3735	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	75678300	75678300	+	Silent	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	75678300	A	T	75678300	2	4	658	1	0	0	0	0	0	0	0	1	7987	117	5	5		5	KARS	16	75678300	Silent	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	5515277	75678300	14676453	75	39747											
ANKRD11	29123	broad.mit.edu	37	16	89345819	89345819	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	89345819	G	A	89345819	2	1	658	1	0	0	0	0	0	0	0	1	639	1136	40	1		1	ANKRD11	16	89345819	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	13667519	89345819	1008934	76	39748											
TSR1	55720	broad.mit.edu	37	17	2237906	2237906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	2237906	G	T	2237906	3	4	658	1	0	0	0	0	1	0	0	0	16676	1328	46	4	1617	4	TSR1	17	2237906	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		2237906	78957304	77	39749											
BCL6B	255877	broad.mit.edu	37	17	6927003	6927003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	6927003	G	T	6927003	3	4	658	1	0	0	0	0	1	0	0	0	1377	1087	38	4	15	4	BCL6B	17	6927003	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	4689097	6927003	74268207	78	39750											
PHF23	79142	broad.mit.edu	37	17	7139965	7139965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	7139965	G	T	7139965	3	4	658	1	0	0	0	0	1	0	0	0	11842	1319	46	4	938	4	PHF23	17	7139965	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	212962	7139965	74055245	79	39751											
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10358389	10358389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	10358389	G	T	10358389	3	4	658	1	0	0	0	0	1	0	0	0	10044	933	33	4	3595	4	MYH4	17	10358389	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	3218424	10358389	70836821	80	39752											
CCDC144A	9720	ucsc.edu;bcgsc.ca	37	17	16612498	16612498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	16612498	A	G	16612498	3	3	658	1	0	0	0	0	1	0	0	0	2779	391	14	3	1145	3	CCDC144A	17	16612498	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	6254109	16612498	64582712	81	39753											
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27014486	27014486	+	Silent	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	27014486	G	T	27014486	2	4	658	1	0	0	0	0	0	0	0	1	15412	1277	45	4		4	SUPT6H	17	27014486	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	10401988	27014486	54180724	82	39754											
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37341119	37341119	+	Splice_Site	SNP	T	T	A	rs3211445		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	37341119	T	A	37341119	5	1	658	1	0	0	0	0	0	0	1	0	2554	1594	55	5	1282	5	CACNB1	17	37341119	Splice_Site	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	10326633	37341119	43854091	83	39755											
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37883597	37883597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	37883597	C	T	37883597	3	4	658	1	0	0	0	0	1	0	0	0	5208	739	26	2	3311	2	ERBB2	17	37883597	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	542478	37883597	43311613	84	39756											
C17orf77	146723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72588562	72588562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	72588562	G	T	72588562	3	4	658	1	0	0	0	0	1	0	0	0	1884	1319	46	4	379	4	C17orf77	17	72588562	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	34704965	72588562	8606648	85	39757											
ZNF407	55628	broad.mit.edu	37	18	72775888	72775888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	72775888	C	T	72775888	3	4	658	1	0	0	0	0	1	0	0	0	17899	759	27	1	6371	1	ZNF407	18	72775888	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		72775888	5301360	86	39758											
TMPRSS9	360200	broad.mit.edu	37	19	2410353	2410353	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	2410353	G	A	2410353	2	1	658	1	0	0	0	0	0	0	0	1	16265	1364	48	2		2	TMPRSS9	19	2410353	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		2410353	56718630	87	39759											
XAB2	56949	broad.mit.edu	37	19	7684501	7684501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	7684501	C	T	7684501	3	4	658	1	0	0	0	0	1	0	0	0	17430	768	27	1	32	1	XAB2	19	7684501	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	5274148	7684501	51444482	88	39760											
MARCH2	51257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8503277	8503277	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	8503277	C	T	8503277	2	4	658	1	0	0	0	0	0	0	0	1	9308	668	24	2		2	MARCH2	19	8503277	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	818776	8503277	50625706	89	39761											
FBL	2091	broad.mit.edu	37	19	40331279	40331279	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	40331279	G	A	40331279	2	1	658	1	0	0	0	0	0	0	0	1	5703	1074	38	1		1	FBL	19	40331279	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	31828002	40331279	18797704	90	39762											
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34765954	34765956	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	-	34765956	CTT	-	34765954	7	5	658	1	0	1	0	1	0	0	0	0	5154	668	24	0	433	0	EPB41L1	20	34765954	In_Frame_Del	DEL	CTT	TCGA-IZ-A6M9-01A-11D-A31X-10		34765954	28259566	91	39763											
ZNF335	63925	bcgsc.ca	37	20	44592465	44592465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	44592465	C	T	44592465	3	4	658	1	0	0	0	0	1	0	0	0	17864	768	27	1	2845	1	ZNF335	20	44592465	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	9826511	44592465	18433055	92	39764											
SYCP2	10388	bcgsc.ca	37	20	58475248	58475248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	58475248	G	T	58475248	3	4	658	1	0	0	0	0	1	0	0	0	15444	1000	35	4	3355	4	SYCP2	20	58475248	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	13882783	58475248	4550272	93	39765											
CLTCL1	8218	broad.mit.edu	37	22	19213138	19213138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	A	19213138	C	A	19213138	3	1	658	1	0	0	0	0	1	0	0	0	3569	594	21	4	3036	4	CLTCL1	22	19213138	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		19213138	32091428	94	39766											
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31345772	31345772	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	31345772	T	G	31345772	3	3	658	1	0	0	0	0	1	0	0	0	9709	1638	57	5	2903	5	MORC2	22	31345772	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	12132634	31345772	19958794	95	39767											
RRP7A	27341	broad.mit.edu;bcgsc.ca	37	22	42910736	42910736	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	42910736	C	T	42910736	2	4	658	1	0	0	0	0	0	0	0	1	13702	622	22	2		2	RRP7A	22	42910736	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	11564964	42910736	8393830	96	39768											
MAGED2	10916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	54841947	54841947	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	54841947	C	T	54841947	2	4	658	1	0	0	0	0	0	0	0	1	9191	581	21	2		2	MAGED2	23	54841947	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		54841947	100428613	97	39769											
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102841929	102841929	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	T	102841929	A	T	102841929	3	4	658	1	0	0	0	0	1	0	0	0	15685	246	9	5	328	5	TCEAL4	23	102841929	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	47999982	102841929	52428631	98	39770											
DOCK11	139818	ucsc.edu;bcgsc.ca	37	X	117786022	117786022	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	C	117786022	T	C	117786022	2	2	658	1	0	0	0	0	0	0	0	1	4688	1403	49	3		3	DOCK11	23	117786022	Silent	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	14944093	117786022	37484538	99	39771											
SLC25A5	292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118603720	118603720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	G	118603720	T	G	118603720	3	3	658	1	0	0	0	0	1	0	0	0	14525	1609	56	5	214	5	SLC25A5	23	118603720	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	817698	118603720	36666840	100	39772											
SFN	2810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27189915	27189915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	27189915	A	G	27189915	3	3	659	1	0	0	0	0	1	0	0	0	14172	304	11	3	214	3	SFN	1	27189915	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08		27189915	222060706	1	39773											
GPR3	2827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27720330	27720350	+	In_Frame_Del	DEL	GCCTGGCTCTCAGCTGGCTCA	GCCTGGCTCTCAGCTGGCTCA	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	GCCTGGCTCTCAGCTGGCTCA	GCCTGGCTCTCAGCTGGCTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	-	27720350	GCCTGGCTCTCAGCTGGCTCA	-	27720330	7	5	659	1	0	1	0	1	0	0	0	0	6693	1203	42	0	30	0	GPR3	1	27720330	In_Frame_Del	DEL	GCCTGGCTCTCAGCTGGCTCA	TCGA-J7-6720-01A-11D-2136-08	530415	27720330	221530291	2	39774											
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145578967	145578967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	145578967	C	T	145578967	3	4	659	1	0	0	0	0	1	0	0	0	11884	739	26	2	559	2	PIAS3	1	145578967	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	117858637	145578967	103671654	3	39775											
HSPA6	3310	hgsc.bcm.edu	37	1	161495275	161495275	+	Missense_Mutation	SNP	T	T	C	rs200790521		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	161495275	T	C	161495275	3	2	659	1	0	0	0	0	1	0	0	0	7422	1580	55	3	829	3	HSPA6	1	161495275	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08	15916308	161495275	87755346	4	39776											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	225598057	225598057	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	225598057	G	C	225598057	3	2	659	1	0	0	0	0	1	0	0	0	8659	1174	41	4	617	4	LBR	1	225598057	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08	64102782	225598057	23652564	5	39777											
ANKRD36B	57730	hgsc.bcm.edu	37	2	98156684	98156684	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	98156684	G	C	98156684	3	2	659	1	0	0	0	0	1	0	0	0	666	1299	45	4	2227	4	ANKRD36B	2	98156684	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08		98156684	145042689	6	39778											
CALCRL	10203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	188245425	188245425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	188245425	A	G	188245425	3	3	659	1	0	0	0	0	1	0	0	0	2582	72	3	3	1151	3	CALCRL	2	188245425	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	90088741	188245425	54953948	7	39779											
WDR12	55759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203762106	203762106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	203762106	C	T	203762106	3	4	659	1	0	0	0	0	1	0	0	0	17286	652	23	1	936	1	WDR12	2	203762106	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	15516681	203762106	39437267	8	39780											
COL4A3	1285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228145271	228145271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	228145271	G	T	228145271	3	4	659	1	0	0	0	0	1	0	0	0	3693	1174	41	4	2457	4	COL4A3	2	228145271	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08	24383165	228145271	15054102	9	39781											
FBXO36	130888	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	230875429	230875429	+	Silent	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	230875429	A	G	230875429	2	3	659	1	0	0	0	0	0	0	0	1	5752	40	2	3		3	FBXO36	2	230875429	Silent	SNP	A	TCGA-J7-6720-01A-11D-2136-08	2730158	230875429	12323944	10	39782											
ACY1	95	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52020519	52020519	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	-	52020519	G	-	52020519	7	5	659	1	0	1	0	1	0	0	0	0	226	1014	35	0	547	0	ACY1	3	52020519	Frame_Shift_Del	DEL	G	TCGA-J7-6720-01A-11D-2136-08		52020519	146001911	11	39783											
TWF2	11344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52269098	52269098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	52269098	A	G	52269098	3	3	659	1	0	0	0	0	1	0	0	0	16794	14	1	3	1031	3	TWF2	3	52269098	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	248579	52269098	145753332	12	39784											
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172025192	172025192	+	Silent	SNP	C	C	G	rs145255541	alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	172025192	C	G	172025192	2	3	659	1	0	0	0	0	0	0	0	1	5977	639	23	4		4	FNDC3B	3	172025192	Silent	SNP	C	TCGA-J7-6720-01A-11D-2136-08	119756094	172025192	25997238	13	39785											
PPP2R2C	5522	hgsc.bcm.edu	37	4	6325301	6325301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	6325301	A	G	6325301	3	3	659	1	0	0	0	0	1	0	0	0	12396	420	15	3	275	3	PPP2R2C	4	6325301	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08		6325301	184828975	14	39786											
TBC1D14	57533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	7026865	7026865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	A	7026865	C	A	7026865	3	1	659	1	0	0	0	0	1	0	0	0	15615	507	18	4	1945	4	TBC1D14	4	7026865	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	701564	7026865	184127411	15	39787											
CEP135	9662	hgsc.bcm.edu	37	4	56832006	56832006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	56832006	A	G	56832006	3	3	659	1	0	0	0	0	1	0	0	0	3249	14	1	3	1051	3	CEP135	4	56832006	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	49805141	56832006	134322270	16	39788											
PDLIM5	10611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	95496927	95496927	+	Missense_Mutation	SNP	C	C	G	rs200734812	alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	95496927	C	G	95496927	3	3	659	1	0	0	0	0	1	0	0	0	11690	507	18	4	466	4	PDLIM5	4	95496927	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	38664921	95496927	95657349	17	39789											
SH3RF1	57630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	170028338	170028338	+	Silent	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	170028338	A	G	170028338	2	3	659	1	0	0	0	0	0	0	0	1	14271	40	2	3		3	SH3RF1	4	170028338	Silent	SNP	A	TCGA-J7-6720-01A-11D-2136-08	74531411	170028338	21125938	18	39790											
MYO10	4651	hgsc.bcm.edu	37	5	16877717	16877717	+	Splice_Site	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	16877717	C	G	16877717	5	3	659	1	0	0	0	0	0	0	1	0	10069	521	18	4	6215	4	MYO10	5	16877717	Splice_Site	SNP	C	TCGA-J7-6720-01A-11D-2136-08		16877717	164037543	19	39791											
GIN1	54826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	102444326	102444335	+	Frame_Shift_Del	DEL	AGTGTAGTTG	AGTGTAGTTG	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	AGTGTAGTTG	AGTGTAGTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	-	102444335	AGTGTAGTTG	-	102444326	7	5	659	1	0	1	0	1	0	0	0	0	6393	188	7	0	1510	0	GIN1	5	102444326	Frame_Shift_Del	DEL	AGTGTAGTTG	TCGA-J7-6720-01A-11D-2136-08	85566609	102444326	78470934	20	39792											
LOX	4015	hgsc.bcm.edu	37	5	121413456	121413456	+	Silent	SNP	G	G	C	rs2278226		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	121413456	G	C	121413456	2	2	659	1	0	0	0	0	0	0	0	1	8905	1103	39	4		4	LOX	5	121413456	Silent	SNP	G	TCGA-J7-6720-01A-11D-2136-08	18969130	121413456	59501804	21	39793											
HINT1	3094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	130500845	130500845	+	Silent	SNP	G	G	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	130500845	G	T	130500845	2	4	659	1	0	0	0	0	0	0	0	1	7118	932	33	4		4	HINT1	5	130500845	Silent	SNP	G	TCGA-J7-6720-01A-11D-2136-08	9087389	130500845	50414415	22	39794											
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179326225	179326225	+	Silent	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	179326225	C	T	179326225	2	4	659	1	0	0	0	0	0	0	0	1	15640	680	24	2		2	TBC1D9B	5	179326225	Silent	SNP	C	TCGA-J7-6720-01A-11D-2136-08	48825380	179326225	1589035	23	39795											
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	20846322	20846322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	20846322	A	G	20846322	3	3	659	1	0	0	0	0	1	0	0	0	3154	391	14	3	681	3	CDKAL1	6	20846322	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08		20846322	150268745	24	39796											
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43472653	43472653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	43472653	A	G	43472653	3	3	659	1	0	0	0	0	1	0	0	0	15940	101	4	3	764	3	TJAP1	6	43472653	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	22626331	43472653	127642414	25	39797											
ZDHHC14	79683	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	158093775	158093785	+	Frame_Shift_Del	DEL	TTCAGAGCACC	TTCAGAGCACC	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	TTCAGAGCACC	TTCAGAGCACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	-	158093785	TTCAGAGCACC	-	158093775	7	5	659	1	0	1	0	1	0	0	0	0	17616	1493	52	0	1122	0	ZDHHC14	6	158093775	Frame_Shift_Del	DEL	TTCAGAGCACC	TCGA-J7-6720-01A-11D-2136-08	114621122	158093775	13021292	26	39798											
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	169642014	169642014	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	169642014	C	G	169642014	3	3	659	1	0	0	0	0	1	0	0	0	15866	768	27	4	2856	4	THBS2	6	169642014	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	11548239	169642014	1473053	27	39799											
PURB	5814	broad.mit.edu	37	7	44924131	44924131	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	-	44924131	A	-	44924131	7	5	659	1	0	1	0	1	0	0	0	0	12841	130	5	0	125	0	PURB	7	44924131	Frame_Shift_Del	DEL	A	TCGA-J7-6720-01A-11D-2136-08		44924131	114214532	28	39800											
ZNF679	168417	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	63726979	63726979	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	63726979	C	G	63726979	3	3	659	1	0	0	0	0	1	0	0	0	18098	623	22	4	982	4	ZNF679	7	63726979	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	18802848	63726979	95411684	29	39801											
KCTD7	154881	hgsc.bcm.edu	37	7	66094155	66094155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	66094155	C	G	66094155	3	3	659	1	0	0	0	0	1	0	0	0	8121	739	26	4	106	4	KCTD7	7	66094155	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	2367176	66094155	93044508	30	39802											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103292216	103292216	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	103292216	G	C	103292216	3	2	659	1	0	0	0	0	1	0	0	0	13233	1261	44	4	8802	4	RELN	7	103292216	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08	37198061	103292216	55846447	31	39803											
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	75227665	75227665	+	Silent	SNP	G	G	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	A	75227665	G	A	75227665	2	1	659	1	0	0	0	0	0	0	0	1	7967	1074	38	1		1	JPH1	8	75227665	Silent	SNP	G	TCGA-J7-6720-01A-11D-2136-08		75227665	71136357	32	39804											
FAM135B	51059	broad.mit.edu;bcgsc.ca	37	8	139180285	139180285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	139180285	T	C	139180285	3	2	659	1	0	0	0	0	1	0	0	0	5453	1667	58	3	3145	3	FAM135B	8	139180285	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08	63952620	139180285	7183737	33	39805											
CYP11B1	1584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143956729	143956729	+	Splice_Site	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	143956729	C	G	143956729	5	3	659	1	0	0	0	0	0	0	1	0	4147	695	24	4	402	4	CYP11B1	8	143956729	Splice_Site	SNP	C	TCGA-J7-6720-01A-11D-2136-08	4776444	143956729	2407293	34	39806											
COL13A1	1305	hgsc.bcm.edu	37	10	71582134	71582134	+	Missense_Mutation	SNP	C	C	T	rs200528707		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	71582134	C	T	71582134	3	4	659	1	0	0	0	0	1	0	0	0	3672	797	28	2	310	2	COL13A1	10	71582134	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08		71582134	63952613	35	39807											
SFRP5	6425	hgsc.bcm.edu	37	10	99531063	99531063	+	Silent	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	99531063	T	C	99531063	2	2	659	1	0	0	0	0	0	0	0	1	14177	1594	55	3		3	SFRP5	10	99531063	Silent	SNP	T	TCGA-J7-6720-01A-11D-2136-08	27948929	99531063	36003684	36	39808											
ING4	51147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6761549	6761549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	-	6761549	C	-	6761549	7	5	659	1	0	1	0	1	0	0	0	0	7745	739	26	0	225	0	ING4	12	6761549	Frame_Shift_Del	DEL	C	TCGA-J7-6720-01A-11D-2136-08		6761549	127090346	37	39809											
FGD4	121512	bcgsc.ca	37	12	32777967	32777968	+	In_Frame_Ins	INS	-	-	TTTTTT	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	TTTTTT	32777968	-	TTTTTT	32777967	7	5	659	1	0	1	1	0	0	0	0	0	5842	101	4	0	1642	0	FGD4	12	32777967	In_Frame_Ins	INS	-	TCGA-J7-6720-01A-11D-2136-08	26016418	32777967	101073928	38	39810											
TCTN2	79867	bcgsc.ca	37	12	124171453	124171453	+	Missense_Mutation	SNP	A	A	G	rs139927033		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	124171453	A	G	124171453	3	3	659	1	0	0	0	0	1	0	0	0	15735	101	4	3	657	3	TCTN2	12	124171453	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	91393486	124171453	9680442	39	39811											
DGKH	160851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	42742631	42742632	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	AT	42742632	GG	AT	42742631	3	1	659	1	0	0	0	0	1	0	0	0	4472	1349	47	2	1212	2	DGKH	13	42742631	Missense_Mutation	DNP	GG	TCGA-J7-6720-01A-11D-2136-08		42742631	72427247	40	39812											
RPGRIP1	57096	hgsc.bcm.edu	37	14	21769356	21769356	+	Silent	SNP	C	C	G	rs144585562		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	G	21769356	C	G	21769356	2	3	659	1	0	0	0	0	0	0	0	1	13562	842	30	4		4	RPGRIP1	14	21769356	Silent	SNP	C	TCGA-J7-6720-01A-11D-2136-08		21769356	85580184	41	39813											
HAUS4	54930	hgsc.bcm.edu;bcgsc.ca	37	14	23415759	23415759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	A	23415759	T	A	23415759	3	1	659	1	0	0	0	0	1	0	0	0	6975	1580	55	5	28	5	HAUS4	14	23415759	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08	1646403	23415759	83933781	42	39814											
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23549776	23549776	+	Silent	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	23549776	T	C	23549776	2	2	659	1	0	0	0	0	0	0	0	1	142	1741	61	3		3	ACIN1	14	23549776	Silent	SNP	T	TCGA-J7-6720-01A-11D-2136-08	134017	23549776	83799764	43	39815											
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24793367	24793367	+	Silent	SNP	C	C	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	A	24793367	C	A	24793367	2	1	659	1	0	0	0	0	0	0	0	1	296	697	25	4		4	ADCY4	14	24793367	Silent	SNP	C	TCGA-J7-6720-01A-11D-2136-08	1243591	24793367	82556173	44	39816											
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	59965574	59965574	+	Silent	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	59965574	T	C	59965574	2	2	659	1	0	0	0	0	0	0	0	1	7956	1828	64	3		3	JKAMP	14	59965574	Silent	SNP	T	TCGA-J7-6720-01A-11D-2136-08	35172207	59965574	47383966	45	39817											
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	81221510	81221511	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	-	81221511	AG	-	81221510	7	5	659	1	0	1	0	1	0	0	0	0	8220	410	15	0	2681	0	KIAA1199	15	81221510	Frame_Shift_Del	DEL	AG	TCGA-J7-6720-01A-11D-2136-08		81221510	21309882	46	39818											
NLRC3	197358	bcgsc.ca	37	16	3594282	3594282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	3594282	C	T	3594282	3	4	659	1	0	0	0	0	1	0	0	0	10475	536	19	1	398	1	NLRC3	16	3594282	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08		3594282	86760471	47	39819											
SBK1	388228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28330355	28330355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	28330355	C	T	28330355	3	4	659	1	0	0	0	0	1	0	0	0	13873	507	18	2	272	2	SBK1	16	28330355	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	24736073	28330355	62024398	48	39820											
GLG1	2734	broad.mit.edu	37	16	74640708	74640708	+	Silent	SNP	A	A	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	74640708	A	C	74640708	2	2	659	1	0	0	0	0	0	0	0	1	6443	146	6	5		5	GLG1	16	74640708	Silent	SNP	A	TCGA-J7-6720-01A-11D-2136-08	46310353	74640708	15714045	49	39821											
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	C	39197304	T	C	39197304	3	2	659	1	0	0	0	0	1	0	0	0	8509	1406	49	3	191	3	KRTAP1-1	17	39197304	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08		39197304	41997906	50	39822											
FASN	2194	hgsc.bcm.edu	37	17	80041950	80041950	+	Missense_Mutation	SNP	G	G	A	rs45557233		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	A	80041950	G	A	80041950	3	1	659	1	0	0	0	0	1	0	0	0	5690	1232	43	2	2596	2	FASN	17	80041950	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08	40844646	80041950	1153260	51	39823											
PSG2	5670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	43585217	43585217	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	43585217	A	T	43585217	4	4	659	1	0	0	0	0	0	1	0	0	12665	224	8	5	777	5	PSG2	19	43585217	Nonsense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08		43585217	15543766	52	39824											
PTGIR	5739	hgsc.bcm.edu	37	19	47126848	47126848	+	Missense_Mutation	SNP	C	C	T	rs2229131		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	47126848	C	T	47126848	3	4	659	1	0	0	0	0	1	0	0	0	12762	768	27	1	533	1	PTGIR	19	47126848	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	3541631	47126848	12002135	53	39825											
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53643573	53643575	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	-	53643575	TGA	-	53643573	7	5	659	1	0	1	0	1	0	0	0	0	17873	1683	59	0	15	0	ZNF347	19	53643573	In_Frame_Del	DEL	TGA	TCGA-J7-6720-01A-11D-2136-08	6516725	53643573	5485410	54	39826											
TGM6	343641	broad.mit.edu;bcgsc.ca	37	20	2384361	2384361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	2384361	C	T	2384361	3	4	659	1	0	0	0	0	1	0	0	0	15846	643	23	1	1262	1	TGM6	20	2384361	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08		2384361	60641159	55	39827											
COL6A2	1292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47542788	47542788	+	Splice_Site	SNP	G	G	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	A	47542788	G	A	47542788	5	1	659	1	0	0	0	0	0	0	1	0	3702	1014	35	2	1686	2	COL6A2	21	47542788	Splice_Site	SNP	G	TCGA-J7-6720-01A-11D-2136-08		47542788	587107	56	39828											
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47809247	47809247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	T	47809247	A	T	47809247	3	4	659	1	0	0	0	0	1	0	0	0	11597	11	1	5	3815	5	PCNT	21	47809247	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	266459	47809247	320648	57	39829											
OSBP2	23762	hgsc.bcm.edu	37	22	31137192	31137192	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	A	31137192	T	A	31137192	3	1	659	1	0	0	0	0	1	0	0	0	11281	1580	55	5	695	5	OSBP2	22	31137192	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08		31137192	20167374	58	39830											
TTLL12	23170	broad.mit.edu;bcgsc.ca	37	22	43579135	43579149	+	In_Frame_Del	DEL	CACTTCCCCAGCGTC	CACTTCCCCAGCGTC	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	CACTTCCCCAGCGTC	CACTTCCCCAGCGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	-	43579149	CACTTCCCCAGCGTC	-	43579135	7	5	659	1	0	1	0	1	0	0	0	0	16737	465	17	0	1788	0	TTLL12	22	43579135	In_Frame_Del	DEL	CACTTCCCCAGCGTC	TCGA-J7-6720-01A-11D-2136-08	12441943	43579135	7725431	59	39831											
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3334451	3334451	+	Silent	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	3334451	C	T	3334451	2	4	660	1	0	0	0	0	0	0	0	1	12467	564	20	2		2	PRDM16	1	3334451	Silent	SNP	C	TCGA-J7-8537-01A-11D-2396-08		3334451	245916170	1	39832											
PRAMEF16	654348	hgsc.bcm.edu	37	1	13497726	13497726	+	Silent	SNP	A	A	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	C	13497726	A	C	13497726	2	2	660	1	0	0	0	0	0	0	0	1	12441	291	11	5		5	PRAMEF16	1	13497726	Silent	SNP	A	TCGA-J7-8537-01A-11D-2396-08	10163275	13497726	235752895	2	39833											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19176018	19176018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	19176018	G	T	19176018	3	4	660	1	0	0	0	0	1	0	0	0	15575	1020	36	4	1247	4	TAS1R2	1	19176018	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	5678292	19176018	230074603	3	39834											
ALDH4A1	8659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19201049	19201049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	19201049	A	G	19201049	3	3	660	1	0	0	0	0	1	0	0	0	501	159	6	3	212	3	ALDH4A1	1	19201049	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	25031	19201049	230049572	4	39835											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27106580	27106580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	C	27106580	T	C	27106580	3	2	660	1	0	0	0	0	1	0	0	0	913	1551	54	3	6269	3	ARID1A	1	27106580	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	7905531	27106580	222144041	5	39836											
MAP7D1	55700	hgsc.bcm.edu	37	1	36642065	36642065	+	Silent	SNP	G	G	A	rs139644057		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	36642065	G	A	36642065	2	1	660	1	0	0	0	0	0	0	0	1	9274	1132	40	1		1	MAP7D1	1	36642065	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08	9535485	36642065	212608556	6	39837											
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42047804	42047804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	42047804	G	A	42047804	3	1	660	1	0	0	0	0	1	0	0	0	7195	1087	38	1	4579	1	HIVEP3	1	42047804	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	5405739	42047804	207202817	7	39838											
YBX1	4904	hgsc.bcm.edu	37	1	43166460	43166460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	43166460	C	T	43166460	3	4	660	1	0	0	0	0	1	0	0	0	17481	681	24	2	775	2	YBX1	1	43166460	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	1118656	43166460	206084161	8	39839											
IPP	3652	broad.mit.edu	37	1	46184897	46184898	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	-	46184898	AC	-	46184897	7	5	660	1	0	1	0	1	0	0	0	0	7807	41	2	0	708	0	IPP	1	46184897	Frame_Shift_Del	DEL	AC	TCGA-J7-8537-01A-11D-2396-08	3018437	46184897	203065724	9	39840											
FNBP1L	54874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94009756	94009756	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	94009756	G	A	94009756	2	1	660	1	0	0	0	0	0	0	0	1	5973	933	33	2		2	FNBP1L	1	94009756	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08	47824859	94009756	155240865	10	39841											
KCNC4	3749	bcgsc.ca	37	1	110754159	110754159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	110754159	G	A	110754159	3	1	660	1	0	0	0	0	1	0	0	0	8024	1087	38	1	40	1	KCNC4	1	110754159	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	16744403	110754159	138496462	11	39842											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152277075	152277075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	152277075	C	A	152277075	3	1	660	1	0	0	0	0	1	0	0	0	5929	680	24	4	1902	4	FLG	1	152277075	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	41522916	152277075	96973546	12	39843											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180047678	180047678	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	180047678	A	T	180047678	3	4	660	1	0	0	0	0	1	0	0	0	3256	188	7	5	5958	5	CEP350	1	180047678	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	27770603	180047678	69202943	13	39844											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237617770	237617770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	237617770	G	T	237617770	3	4	660	1	0	0	0	0	1	0	0	0	13782	1174	41	4	1430	4	RYR2	1	237617770	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	57570092	237617770	11632851	14	39845											
OR2L3	391192	hgsc.bcm.edu	37	1	248224864	248224864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	248224864	A	G	248224864	3	3	660	1	0	0	0	0	1	0	0	0	11015	72	3	3	883	3	OR2L3	1	248224864	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	10607094	248224864	1025757	15	39846											
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17962008	17962008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	17962008	G	A	17962008	3	1	660	1	0	0	0	0	1	0	0	0	6342	1232	43	2	1579	2	GEN1	2	17962008	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08		17962008	225237365	16	39847											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21238283	21238283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	21238283	G	A	21238283	3	1	660	1	0	0	0	0	1	0	0	0	785	971	34	2	10256	2	APOB	2	21238283	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	3276275	21238283	221961090	17	39848											
RNF103	7844	hgsc.bcm.edu	37	2	86832538	86832538	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	C	86832538	A	C	86832538	4	2	660	1	0	0	0	0	0	1	0	0	13436	108	4	5	1575	5	RNF103	2	86832538	Nonsense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	65594255	86832538	156366835	18	39849											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141607702	141607702	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	141607702	G	A	141607702	2	1	660	1	0	0	0	0	0	0	0	1	8962	1136	40	1		1	LRP1B	2	141607702	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08	54775164	141607702	101591671	19	39850											
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151161388	151161388	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	151161388	T	A	151161388	3	1	660	1	0	0	0	0	1	0	0	0	7604	1841	64	5	2580	5	IGSF10	3	151161388	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08		151161388	46861042	20	39851											
GOLIM4	27333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	167742778	167742778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	C	167742778	T	C	167742778	3	2	660	1	0	0	0	0	1	0	0	0	6573	1841	64	3	377	3	GOLIM4	3	167742778	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	16581390	167742778	30279652	21	39852											
BST1	683	hgsc.bcm.edu	37	4	15704874	15704874	+	Missense_Mutation	SNP	G	G	C	rs2302468		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	C	15704874	G	C	15704874	3	2	660	1	0	0	0	0	1	0	0	0	1535	1232	43	4	109	4	BST1	4	15704874	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08		15704874	175449402	22	39853											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104117119	104117119	+	Silent	SNP	A	A	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	C	104117119	A	C	104117119	2	2	660	1	0	0	0	0	0	0	0	1	3232	349	13	5		5	CENPE	4	104117119	Silent	SNP	A	TCGA-J7-8537-01A-11D-2396-08	88412245	104117119	87037157	23	39854											
MAML3	55534	broad.mit.edu	37	4	140810639	140810641	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	-	140810641	GCT	-	140810639	7	5	660	1	0	1	0	1	0	0	0	0	9214	1203	42	0	1481	0	MAML3	4	140810639	In_Frame_Del	DEL	GCT	TCGA-J7-8537-01A-11D-2396-08	36693520	140810639	50343637	24	39855											
FAT1	2195	broad.mit.edu	37	4	187539365	187539365	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	-	187539365	G	-	187539365	7	5	660	1	0	1	0	1	0	0	0	0	5696	942	33	0	5463	0	FAT1	4	187539365	Frame_Shift_Del	DEL	G	TCGA-J7-8537-01A-11D-2396-08	46728726	187539365	3614911	25	39856											
TPPP	11076	hgsc.bcm.edu	37	5	678087	678087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	678087	C	T	678087	3	4	660	1	0	0	0	0	1	0	0	0	16425	681	24	2	582	2	TPPP	5	678087	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		678087	180237173	26	39857											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	55247844	55247844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	55247844	C	G	55247844	3	3	660	1	0	0	0	0	1	0	0	0	7710	922	32	4	1164	4	IL6ST	5	55247844	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	54569757	55247844	125667416	27	39858											
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140712677	140712677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	140712677	A	G	140712677	3	3	660	1	0	0	0	0	1	0	0	0	11557	43	2	3	2428	3	PCDHGA1	5	140712677	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	85464833	140712677	40202583	28	39859											
CSF1R	1436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149433707	149433707	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	149433707	A	T	149433707	3	4	660	1	0	0	0	0	1	0	0	0	3934	156	6	5	78	5	CSF1R	5	149433707	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	8721030	149433707	31481553	29	39860											
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	27420221	27420223	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	-	27420223	TGG	-	27420221	7	5	660	1	0	1	0	1	0	0	0	0	17763	1579	55	0	1142	0	ZNF184	6	27420221	In_Frame_Del	DEL	TGG	TCGA-J7-8537-01A-11D-2396-08		27420221	143694846	30	39861											
HLA-G	3135	ucsc.edu	37	6	29797253	29797253	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	29797253	G	A	29797253	2	1	660	1	0	0	0	0	0	0	0	1	7219	1252	44	2		2	HLA-G	6	29797253	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08	2377032	29797253	141317814	31	39862											
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31762754	31762754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	31762754	G	T	31762754	3	4	660	1	0	0	0	0	1	0	0	0	17135	1203	42	4	3669	4	VARS	6	31762754	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	1965501	31762754	139352313	32	39863											
AARS2	57505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44272835	44272835	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	44272835	T	A	44272835	3	1	660	1	0	0	0	0	1	0	0	0	20	1667	58	5	1470	5	AARS2	6	44272835	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	12510081	44272835	126842232	33	39864											
FOXK1	221937	broad.mit.edu	37	7	4802068	4802068	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	-	4802068	C	-	4802068	7	5	660	1	0	1	0	1	0	0	0	0	6021	726	26	0	2209	0	FOXK1	7	4802068	Frame_Shift_Del	DEL	C	TCGA-J7-8537-01A-11D-2396-08		4802068	154336595	34	39865											
PUS7	54517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	105099624	105099624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	105099624	A	G	105099624	3	3	660	1	0	0	0	0	1	0	0	0	12846	14	1	3	153	3	PUS7	7	105099624	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	100297556	105099624	54039039	35	39866											
RINT1	60561	hgsc.bcm.edu	37	7	105177143	105177143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	105177143	C	A	105177143	3	1	660	1	0	0	0	0	1	0	0	0	13389	565	20	4	230	4	RINT1	7	105177143	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	77519	105177143	53961520	36	39867											
ST8SIA6	338596	hgsc.bcm.edu;broad.mit.edu	37	10	17495608	17495608	+	Silent	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	17495608	C	T	17495608	2	4	660	1	0	0	0	0	0	0	0	1	15248	755	27	1		1	ST8SIA6	10	17495608	Silent	SNP	C	TCGA-J7-8537-01A-11D-2396-08		17495608	118039139	37	39868											
DMBT1	1755	hgsc.bcm.edu	37	10	124361509	124361509	+	Silent	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	C	124361509	T	C	124361509	2	2	660	1	0	0	0	0	0	0	0	1	4579	1712	60	3		3	DMBT1	10	124361509	Silent	SNP	T	TCGA-J7-8537-01A-11D-2396-08	106865901	124361509	11173238	38	39869											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129910454	129910454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	129910454	T	G	129910454	3	3	660	1	0	0	0	0	1	0	0	0	9605	1406	49	5	7886	5	MKI67	10	129910454	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	5548945	129910454	5624293	39	39870											
TSG101	7251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18541141	18541142	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	-	18541142	TG	-	18541141	7	5	660	1	0	1	0	1	0	0	0	0	16628	1588	55	0	1156	0	TSG101	11	18541141	Frame_Shift_Del	DEL	TG	TCGA-J7-8537-01A-11D-2396-08		18541141	116465375	40	39871											
INCENP	3619	hgsc.bcm.edu	37	11	61914245	61914245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	61914245	G	A	61914245	3	1	660	1	0	0	0	0	1	0	0	0	7740	1116	39	1	2129	1	INCENP	11	61914245	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	43373104	61914245	73092271	41	39872											
PUS7L	83448	hgsc.bcm.edu	37	12	44149019	44149019	+	Missense_Mutation	SNP	C	C	A	rs148928799	alternate_allele	TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	44149019	C	A	44149019	3	1	660	1	0	0	0	0	1	0	0	0	12847	506	18	4	2107	4	PUS7L	12	44149019	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		44149019	89702876	42	39873											
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121766167	121766168	+	Missense_Mutation	DNP	TC	TC	CA	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	CA	121766168	TC	CA	121766167	3	2	660	1	0	0	0	0	1	0	0	0	605	1435	50	3	1043	3	ANAPC5	12	121766167	Missense_Mutation	DNP	TC	TCGA-J7-8537-01A-11D-2396-08	77617148	121766167	12085728	43	39874											
LATS2	26524	broad.mit.edu	37	13	21562482	21562483	+	In_Frame_Ins	INS	-	-	GGGGCG	rs10658032		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	GGGGCG	21562483	-	GGGGCG	21562482	7	5	660	1	0	1	1	0	0	0	0	0	8654	639	23	0	1849	0	LATS2	13	21562482	In_Frame_Ins	INS	-	TCGA-J7-8537-01A-11D-2396-08		21562482	93607396	44	39875											
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113741757	113741757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	113741757	A	G	113741757	3	3	660	1	0	0	0	0	1	0	0	0	9386	72	3	3	2934	3	MCF2L	13	113741757	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	92179275	113741757	1428121	45	39876											
BAZ1A	11177	hgsc.bcm.edu	37	14	35269498	35269498	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	35269498	T	A	35269498	4	1	660	1	0	0	0	0	0	1	0	0	1329	1850	64	5	3686	5	BAZ1A	14	35269498	Nonsense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08		35269498	72080042	46	39877											
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65009419	65009419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	65009419	C	A	65009419	3	1	660	1	0	0	0	0	1	0	0	0	7418	855	30	4	1854	4	HSPA2	14	65009419	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	29739921	65009419	42340121	47	39878											
EIF2AK4	440275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40324962	40324962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	40324962	A	G	40324962	3	3	660	1	0	0	0	0	1	0	0	0	5001	333	12	3	4879	3	EIF2AK4	15	40324962	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08		40324962	62206430	48	39879											
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19051691	19051691	+	Silent	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	19051691	C	A	19051691	2	1	660	1	0	0	0	0	0	0	0	1	16002	816	29	4		4	TMC7	16	19051691	Silent	SNP	C	TCGA-J7-8537-01A-11D-2396-08		19051691	71303062	49	39880											
NETO2	81831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	47117430	47117430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	47117430	C	T	47117430	3	4	660	1	0	0	0	0	1	0	0	0	10347	768	27	1	301	1	NETO2	16	47117430	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	28065739	47117430	43237323	50	39881											
EIF4A1	1973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7478578	7478578	+	Splice_Site	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	7478578	T	G	7478578	5	3	660	1	0	0	0	0	0	0	1	0	5026	1652	57	5	361	5	EIF4A1	17	7478578	Splice_Site	SNP	T	TCGA-J7-8537-01A-11D-2396-08		7478578	73716632	51	39882											
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38187790	38187790	+	Splice_Site	SNP	C	C	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	38187790	C	G	38187790	5	3	660	1	0	0	0	0	0	0	1	0	9449	579	20	4	1965	4	MED24	17	38187790	Splice_Site	SNP	C	TCGA-J7-8537-01A-11D-2396-08	30709212	38187790	43007420	52	39883											
MPP3	4356	broad.mit.edu	37	17	41888202	41888203	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	-	41888203	TT	-	41888202	7	5	660	1	0	1	0	1	0	0	0	0	9742	1606	56	0	338	0	MPP3	17	41888202	Frame_Shift_Del	DEL	TT	TCGA-J7-8537-01A-11D-2396-08	3700412	41888202	39307008	53	39884											
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	45669357	45669357	+	Silent	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	45669357	A	T	45669357	2	4	660	1	0	0	0	0	0	0	0	1	10582	439	16	5		5	NPEPPS	17	45669357	Silent	SNP	A	TCGA-J7-8537-01A-11D-2396-08	3781155	45669357	35525853	54	39885											
LINGO3	645191	hgsc.bcm.edu	37	19	2290499	2290499	+	Missense_Mutation	SNP	C	C	T	rs7258841		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	2290499	C	T	2290499	3	4	660	1	0	0	0	0	1	0	0	0	8823	768	27	1	505	1	LINGO3	19	2290499	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		2290499	56838484	55	39886											
ZNF682	91120	hgsc.bcm.edu	37	19	20117835	20117835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	C	20117835	T	C	20117835	3	2	660	1	0	0	0	0	1	0	0	0	18101	1493	52	3	1024	3	ZNF682	19	20117835	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	17827336	20117835	39011148	56	39887											
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58005060	58005060	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	58005060	T	G	58005060	3	3	660	1	0	0	0	0	1	0	0	0	17908	1493	52	5	1156	5	ZNF419	19	58005060	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	37887225	58005060	1123923	57	39888											
FAM83D	81610	hgsc.bcm.edu	37	20	37555364	37555364	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	A	37555364	G	A	37555364	2	1	660	1	0	0	0	0	0	0	0	1	5643	1074	38	1		1	FAM83D	20	37555364	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08		37555364	25470156	58	39889											
GART	2618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34904710	34904710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	34904710	C	T	34904710	3	4	660	1	0	0	0	0	1	0	0	0	6250	681	24	2	2639	2	GART	21	34904710	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		34904710	13225185	59	39890											
ADORA2A	135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24837246	24837246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	24837246	C	T	24837246	3	4	660	1	0	0	0	0	1	0	0	0	327	594	21	2	1034	2	ADORA2A	22	24837246	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		24837246	26467320	60	39891											
GRPR	2925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	16168549	16168550	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	C	16168550	-	C	16168549	7	5	660	1	0	1	1	0	0	0	0	0	6815	1783	62	0	541	0	GRPR	23	16168549	Frame_Shift_Ins	INS	-	TCGA-J7-8537-01A-11D-2396-08		16168549	139102011	61	39892											
CNKSR2	22866	broad.mit.edu	37	X	21627678	21627680	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	-	21627680	GAG	-	21627678	7	5	660	1	0	1	0	1	0	0	0	0	3609	943	33	0	2713	0	CNKSR2	23	21627678	In_Frame_Del	DEL	GAG	TCGA-J7-8537-01A-11D-2396-08	5459129	21627678	133642882	62	39893											
RP2	6102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	46713306	46713306	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	G	46713306	C	G	46713306	3	3	660	1	0	0	0	0	1	0	0	0	13547	903	32	4	504	4	RP2	23	46713306	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	25085628	46713306	108557254	63	39894											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	144904238	144904238	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	T	144904238	C	T	144904238	4	4	660	1	0	0	0	0	0	1	0	0	14756	479	17	2	297	2	SLITRK2	23	144904238	Nonsense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	98190932	144904238	10366322	64	39895											
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	19480348	19480349	+	Missense_Mutation	DNP	GC	GC	TA	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	TA	19480349	GC	TA	19480348	3	4	661	1	0	0	0	0	1	0	0	0	16916	1328	46	4	9255	4	UBR4	1	19480348	Missense_Mutation	DNP	GC	TCGA-KL-8323-01A-21D-2310-10		19480348	229770273	1	39896	507	2									
UBR4	23352	bcgsc.ca	37	1	19480349	19480349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	19480349	C	A	19480349	3	1	661	1	0	0	0	0	1	0	0	0	16916	796	28	4	9256	4	UBR4	1	19480349	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	1	19480349	229770272	2	39897	507	2									
AIM1L	55057	ucsc.edu	37	1	26664510	26664510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	26664510	T	C	26664510	3	2	661	1	0	0	0	0	1	0	0	0	431	1551	54	3	1537	3	AIM1L	1	26664510	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	7184161	26664510	222586111	3	39898											
ATF6	22926	ucsc.edu	37	1	161790871	161790871	+	Silent	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	161790871	T	C	161790871	2	2	661	1	0	0	0	0	0	0	0	1	1084	1741	61	3		3	ATF6	1	161790871	Silent	SNP	T	TCGA-KL-8323-01A-21D-2310-10	135126361	161790871	87459750	4	39899											
RC3H1	149041	broad.mit.edu	37	1	173912597	173912597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	173912597	T	C	173912597	3	2	661	1	0	0	0	0	1	0	0	0	13179	1725	60	3	295	3	RC3H1	1	173912597	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	12121726	173912597	75338024	5	39900											
RASAL2	9462	hgsc.bcm.edu	37	1	178421771	178421771	+	Silent	SNP	C	C	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	178421771	C	T	178421771	2	4	661	1	0	0	0	0	0	0	0	1	13077	680	24	2		2	RASAL2	1	178421771	Silent	SNP	C	TCGA-KL-8323-01A-21D-2310-10	4509174	178421771	70828850	6	39901											
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	228548164	228548164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	228548164	G	A	228548164	3	1	661	1	0	0	0	0	1	0	0	0	10819	1058	37	1	19889	1	OBSCN	1	228548164	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	50126393	228548164	20702457	7	39902											
OR2T8	343172	broad.mit.edu	37	1	248084369	248084369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	248084369	A	G	248084369	3	3	661	1	0	0	0	0	1	0	0	0	11037	43	2	3	52	3	OR2T8	1	248084369	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	19536205	248084369	1166252	8	39903											
STRN	6801	ucsc.edu	37	2	37094995	37094995	+	Silent	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	37094995	A	G	37094995	2	3	661	1	0	0	0	0	0	0	0	1	15341	291	11	3		3	STRN	2	37094995	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10		37094995	206104378	9	39904											
THADA	63892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	43507026	43507026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	43507026	T	C	43507026	3	2	661	1	0	0	0	0	1	0	0	0	15852	1435	50	3	699	3	THADA	2	43507026	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	6412031	43507026	199692347	10	39905											
SMYD1	150572	broad.mit.edu	37	2	88387571	88387571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	88387571	T	C	88387571	3	2	661	1	0	0	0	0	1	0	0	0	14834	1638	57	3	515	3	SMYD1	2	88387571	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	44880545	88387571	154811802	11	39906											
RGPD4	285190	ucsc.edu	37	2	108487266	108487266	+	Missense_Mutation	SNP	G	G	A	rs3868856		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	108487266	G	A	108487266	3	1	661	1	0	0	0	0	1	0	0	0	13301	1175	41	2	2884	2	RGPD4	2	108487266	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	20099695	108487266	134712107	12	39907											
CCDC74A	90557	broad.mit.edu;mdanderson.org	37	2	132290278	132290278	+	Missense_Mutation	SNP	G	G	A	rs138310081	byfrequency	TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	132290278	G	A	132290278	3	1	661	1	0	0	0	0	1	0	0	0	2849	1058	37	1	818	1	CCDC74A	2	132290278	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	23803012	132290278	110909095	13	39908											
CCDC74A	90557	broad.mit.edu;mdanderson.org	37	2	132290352	132290352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	132290352	G	C	132290352	3	2	661	1	0	0	0	0	1	0	0	0	2849	943	33	4	892	4	CCDC74A	2	132290352	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	74	132290352	110909021	14	39909											
NEB	4703	broad.mit.edu	37	2	152350685	152350685	+	Missense_Mutation	SNP	T	T	C	rs200544122		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	152350685	T	C	152350685	3	2	661	1	0	0	0	0	1	0	0	0	10309	1725	60	3	1044	3	NEB	2	152350685	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	20060333	152350685	90848688	15	39910											
DLX2	1746	hgsc.bcm.edu	37	2	172966928	172966928	+	Silent	SNP	G	G	T	rs143444914		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	172966928	G	T	172966928	2	4	661	1	0	0	0	0	0	0	0	1	4573	1103	39	4		4	DLX2	2	172966928	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10	20616243	172966928	70232445	16	39911											
HDAC4	9759	ucsc.edu	37	2	240033259	240033259	+	Silent	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	240033259	A	G	240033259	2	3	661	1	0	0	0	0	0	0	0	1	7016	175	7	3		3	HDAC4	2	240033259	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10	67066331	240033259	3166114	17	39912											
GAL3ST2	64090	broad.mit.edu;ucsc.edu	37	2	242741375	242741375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	242741375	C	T	242741375	3	4	661	1	0	0	0	0	1	0	0	0	6205	768	27	1	309	1	GAL3ST2	2	242741375	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	2708116	242741375	457998	18	39913											
VILL	50853	broad.mit.edu	37	3	38040855	38040855	+	Silent	SNP	C	C	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	38040855	C	T	38040855	2	4	661	1	0	0	0	0	0	0	0	1	17177	535	19	1		1	VILL	3	38040855	Silent	SNP	C	TCGA-KL-8323-01A-21D-2310-10		38040855	159981575	19	39914											
GPR27	2850	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	71804279	71804279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	71804279	G	A	71804279	3	1	661	1	0	0	0	0	1	0	0	0	6692	1116	39	1	1081	1	GPR27	3	71804279	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	33763424	71804279	126218151	20	39915											
VEPH1	79674	broad.mit.edu	37	3	157082297	157082297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	157082297	T	C	157082297	3	2	661	1	0	0	0	0	1	0	0	0	17166	1850	64	3	1397	3	VEPH1	3	157082297	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	85278018	157082297	40940133	21	39916											
ZBBX	79740	ucsc.edu	37	3	166960302	166960302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	166960302	T	C	166960302	3	2	661	1	0	0	0	0	1	0	0	0	17528	1551	54	3	143	3	ZBBX	3	166960302	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	9878005	166960302	31062128	22	39917											
AADAT	51166	broad.mit.edu	37	4	171009684	171009684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	171009684	C	T	171009684	3	4	661	1	0	0	0	0	1	0	0	0	14	826	29	2	1226	2	AADAT	4	171009684	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10		171009684	20144592	23	39918											
POU5F2	134187	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	93076393	93076393	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	93076393	G	C	93076393	3	2	661	1	0	0	0	0	1	0	0	0	12290	1290	45	4	113	4	POU5F2	5	93076393	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10		93076393	87838867	24	39919											
MEGF10	84466	ucsc.edu	37	5	126755867	126755867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	126755867	T	C	126755867	3	2	661	1	0	0	0	0	1	0	0	0	9467	1464	51	3	1600	3	MEGF10	5	126755867	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	33679474	126755867	54159393	25	39920											
FAM153B	202134	broad.mit.edu	37	5	175530235	175530235	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	175530235	A	C	175530235	3	2	661	1	0	0	0	0	1	0	0	0	5465	333	12	5	720	5	FAM153B	5	175530235	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	48774368	175530235	5385025	26	39921											
RMND1	55005	ucsc.edu	37	6	151744763	151744763	+	Silent	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	151744763	T	C	151744763	2	2	661	1	0	0	0	0	0	0	0	1	13409	1654	58	3		3	RMND1	6	151744763	Silent	SNP	T	TCGA-KL-8323-01A-21D-2310-10		151744763	19370304	27	39922											
PTPRN2	5799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	157931202	157931202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	157931202	G	A	157931202	3	1	661	1	0	0	0	0	1	0	0	0	12821	1144	40	1	2199	1	PTPRN2	7	157931202	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10		157931202	1207461	28	39923											
ADAM32	203102	ucsc.edu	37	8	38965348	38965348	+	Silent	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	38965348	A	G	38965348	2	3	661	1	0	0	0	0	0	0	0	1	249	272	10	3		3	ADAM32	8	38965348	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10		38965348	107398674	29	39924											
NOXA1	10811	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	140327707	140327707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	140327707	G	A	140327707	3	1	661	1	0	0	0	0	1	0	0	0	10567	1232	43	2	939	2	NOXA1	9	140327707	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10		140327707	885724	30	39925											
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	16967262	16967262	+	Silent	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	16967262	G	A	16967262	2	1	661	1	0	0	0	0	0	0	0	1	4053	1280	45	2		2	CUBN	10	16967262	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10		16967262	118567485	31	39926											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	89711966	89711966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	89711966	T	C	89711966	3	2	661	1	0	0	0	0	1	0	0	0	12748	1841	64	3	606	3	PTEN	10	89711966	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	72744704	89711966	45822781	32	39927											
PHRF1	57661	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	605169	605169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	605169	G	T	605169	3	4	661	1	0	0	0	0	1	0	0	0	11868	1194	42	4	1241	4	PHRF1	11	605169	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10		605169	134401347	33	39928											
MUC5B	727897	broad.mit.edu	37	11	1270385	1270385	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	1270385	C	G	1270385	3	3	661	1	0	0	0	0	1	0	0	0	9986	739	26	4	12406	4	MUC5B	11	1270385	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	665216	1270385	133736131	34	39929											
MED17	9440	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	93517753	93517753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	93517753	A	G	93517753	3	3	661	1	0	0	0	0	1	0	0	0	9442	333	12	3	76	3	MED17	11	93517753	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	92247368	93517753	41488763	35	39930											
LIMA1	51474	broad.mit.edu	37	12	50575718	50575718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	50575718	A	G	50575718	3	3	661	1	0	0	0	0	1	0	0	0	8803	72	3	3	1044	3	LIMA1	12	50575718	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10		50575718	83276177	36	39931											
ALKBH2	121642	broad.mit.edu;ucsc.edu	37	12	109526037	109526037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	109526037	G	A	109526037	3	1	661	1	0	0	0	0	1	0	0	0	527	1058	37	1	29	1	ALKBH2	12	109526037	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	58950319	109526037	24325858	37	39932											
HERC2	8924	broad.mit.edu	37	15	28447318	28447318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	28447318	A	G	28447318	3	3	661	1	0	0	0	0	1	0	0	0	7065	275	10	3	7134	3	HERC2	15	28447318	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10		28447318	74084074	38	39933											
MESDC1	59274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	81295653	81295653	+	Silent	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	81295653	G	A	81295653	2	1	661	1	0	0	0	0	0	0	0	1	9487	1252	44	2		2	MESDC1	15	81295653	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10	52848335	81295653	21235739	39	39934											
NTRK3	4916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	88727494	88727494	+	Silent	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	88727494	G	A	88727494	2	1	661	1	0	0	0	0	0	0	0	1	10715	1136	40	1		1	NTRK3	15	88727494	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10	7431841	88727494	13803898	40	39935											
KATNB1	10300	ucsc.edu	37	16	57788846	57788846	+	Silent	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	57788846	A	G	57788846	2	3	661	1	0	0	0	0	0	0	0	1	7994	175	7	3		3	KATNB1	16	57788846	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10		57788846	32565907	41	39936											
PRMT7	54496	ucsc.edu	37	16	68373380	68373380	+	Silent	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	68373380	T	C	68373380	2	2	661	1	0	0	0	0	0	0	0	1	12551	1567	55	3		3	PRMT7	16	68373380	Silent	SNP	T	TCGA-KL-8323-01A-21D-2310-10	10584534	68373380	21981373	42	39937											
TNFSF13	8741	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7462433	7462433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	7462433	C	T	7462433	3	4	661	1	0	0	0	0	1	0	0	0	16317	710	25	2	79	2	TNFSF13	17	7462433	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10		7462433	73732777	43	39938											
MAPK7	5598	broad.mit.edu;mdanderson.org	37	17	19284374	19284374	+	Silent	SNP	C	C	T	rs145605078		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	19284374	C	T	19284374	2	4	661	1	0	0	0	0	0	0	0	1	9289	639	23	1		1	MAPK7	17	19284374	Silent	SNP	C	TCGA-KL-8323-01A-21D-2310-10	11821941	19284374	61910836	44	39939											
SPAG5	10615	broad.mit.edu	37	17	26910630	26910630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	26910630	G	T	26910630	3	4	661	1	0	0	0	0	1	0	0	0	14994	1328	46	4	1037	4	SPAG5	17	26910630	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	7626256	26910630	54284580	45	39940											
SOCS7	30837	broad.mit.edu	37	17	36520640	36520640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	36520640	A	G	36520640	3	3	661	1	0	0	0	0	1	0	0	0	14932	43	2	3	869	3	SOCS7	17	36520640	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	9610010	36520640	44674570	46	39941											
KRT20	54474	broad.mit.edu;mdanderson.org;bcgsc.ca	37	17	39041356	39041356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	39041356	G	A	39041356	3	1	661	1	0	0	0	0	1	0	0	0	8465	1087	38	1	1224	1	KRT20	17	39041356	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	2520716	39041356	42153854	47	39942											
ITGA3	3675	bcgsc.ca	37	17	48165656	48165656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	48165656	A	G	48165656	3	3	661	1	0	0	0	0	1	0	0	0	7884	72	3	3	3211	3	ITGA3	17	48165656	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	9124300	48165656	33029554	48	39943											
SMURF2	64750	bcgsc.ca	37	17	62579654	62579654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	62579654	T	C	62579654	3	2	661	1	0	0	0	0	1	0	0	0	14833	1783	62	3	1804	3	SMURF2	17	62579654	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	14413998	62579654	18615556	49	39944											
GAA	2548	broad.mit.edu	37	17	78082576	78082576	+	Silent	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	78082576	G	A	78082576	2	1	661	1	0	0	0	0	0	0	0	1	6154	1103	39	1		1	GAA	17	78082576	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10	15502922	78082576	3112634	50	39945											
LMAN1	3998	broad.mit.edu	37	18	57022610	57022610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	57022610	A	G	57022610	3	3	661	1	0	0	0	0	1	0	0	0	8843	43	2	3	1164	3	LMAN1	18	57022610	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10		57022610	21054638	51	39946											
HMHA1	23526	broad.mit.edu;mdanderson.org	37	19	1084344	1084344	+	Silent	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	1084344	A	G	1084344	2	3	661	1	0	0	0	0	0	0	0	1	7247	318	11	3		3	HMHA1	19	1084344	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10		1084344	58044639	52	39947											
CACNA1A	773	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	13476272	13476272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	13476272	C	T	13476272	3	4	661	1	0	0	0	0	1	0	0	0	2540	536	19	1	7163	1	CACNA1A	19	13476272	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	12391928	13476272	45652711	53	39948											
ZNF257	113835	broad.mit.edu	37	19	22256335	22256335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	22256335	G	A	22256335	3	1	661	1	0	0	0	0	1	0	0	0	17812	1290	45	2	205	2	ZNF257	19	22256335	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	8780063	22256335	36872648	54	39949											
FFAR1	2864	broad.mit.edu	37	19	35842701	35842701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	A	35842701	G	A	35842701	3	1	661	1	0	0	0	0	1	0	0	0	5834	1087	38	1	249	1	FFAR1	19	35842701	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	13586366	35842701	23286282	55	39950											
WDR62	284403	broad.mit.edu;hgsc.bcm.edu	37	19	36558850	36558851	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	AC	36558851	-	AC	36558850	7	5	661	1	0	1	1	0	0	0	0	0	17325	1522	53	0	846	0	WDR62	19	36558850	Frame_Shift_Ins	INS	-	TCGA-KL-8323-01A-21D-2310-10	716149	36558850	22570133	56	39951											
HM13	81502	bcgsc.ca	37	20	30149459	30149459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	30149459	T	C	30149459	3	2	661	1	0	0	0	0	1	0	0	0	7224	1522	53	3	973	3	HM13	20	30149459	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10		30149459	32876061	57	39952											
PATZ1	23598	broad.mit.edu	37	22	31741114	31741114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	31741114	A	G	31741114	3	3	661	1	0	0	0	0	1	0	0	0	11483	275	10	3	1891	3	PATZ1	22	31741114	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10		31741114	19563452	58	39953											
SFI1	9814	broad.mit.edu;ucsc.edu	37	22	32000342	32000342	+	Silent	SNP	C	C	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	32000342	C	T	32000342	2	4	661	1	0	0	0	0	0	0	0	1	14169	506	18	2		2	SFI1	22	32000342	Silent	SNP	C	TCGA-KL-8323-01A-21D-2310-10	259228	32000342	19304224	59	39954											
CXorf59	286464	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	36117961	36117961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	36117961	C	T	36117961	3	4	661	1	0	0	0	0	1	0	0	0	4117	527	19	1	839	1	CXorf59	23	36117961	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10		36117961	119152599	60	39955											
USP9X	8239	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	41002593	41002593	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	G	41002593	T	G	41002593	3	3	661	1	0	0	0	0	1	0	0	0	17102	1609	56	5	1245	5	USP9X	23	41002593	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	4884632	41002593	114267967	61	39956											
PHF8	23133	hgsc.bcm.edu	37	X	54049206	54049206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	54049206	G	T	54049206	3	4	661	1	0	0	0	0	1	0	0	0	11847	1319	46	4	3155	4	PHF8	23	54049206	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	13046613	54049206	101221354	62	39957											
ZC4H2	55906	broad.mit.edu;bcgsc.ca	37	X	64137684	64137684	+	Missense_Mutation	SNP	C	C	T	rs149235340	byfrequency	TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	T	64137684	C	T	64137684	3	4	661	1	0	0	0	0	1	0	0	0	17590	884	31	1	43	1	ZC4H2	23	64137684	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	10088478	64137684	91132876	63	39958											
ATP11C	286410	broad.mit.edu	37	X	138823233	138823233	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb	C	138823233	G	C	138823233	3	2	661	1	0	0	0	0	1	0	0	0	1121	933	33	4	417	4	ATP11C	23	138823233	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	74685549	138823233	16447327	64	39959											
IL28RA	163702	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	24484160	24484160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	24484160	C	A	24484160	3	1	662	1	0	0	0	0	1	0	0	0	7691	796	28	4	543	4	IL28RA	1	24484160	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10		24484160	224766461	1	39960											
TMEM61	199964	hgsc.bcm.edu;mdanderson.org	37	1	55457726	55457726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	55457726	G	T	55457726	3	4	662	1	0	0	0	0	1	0	0	0	16200	1319	46	4	593	4	TMEM61	1	55457726	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	30973566	55457726	193792895	2	39961											
AGL	178	broad.mit.edu	37	1	100353594	100353594	+	Silent	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	100353594	A	G	100353594	2	3	662	1	0	0	0	0	0	0	0	1	384	69	3	3		3	AGL	1	100353594	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	44895868	100353594	148897027	3	39962											
KIAA1324	57535	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	109731772	109731772	+	Missense_Mutation	SNP	C	C	T	rs143784237		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	109731772	C	T	109731772	3	4	662	1	0	0	0	0	1	0	0	0	8230	536	19	1	1342	1	KIAA1324	1	109731772	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	9378178	109731772	139518849	4	39963											
MOV10	4343	ucsc.edu	37	1	113241049	113241049	+	Silent	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	113241049	A	G	113241049	2	3	662	1	0	0	0	0	0	0	0	1	9725	69	3	3		3	MOV10	1	113241049	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	3509277	113241049	136009572	5	39964											
SPAG17	200162	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	118535252	118535252	+	Missense_Mutation	SNP	G	G	A	rs147490539		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	118535252	G	A	118535252	3	1	662	1	0	0	0	0	1	0	0	0	14992	1116	39	1	1525	1	SPAG17	1	118535252	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	5294203	118535252	130715369	6	39965											
CR2	1380	bcgsc.ca	37	1	207644142	207644142	+	Missense_Mutation	SNP	G	G	A	rs183067414		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	207644142	G	A	207644142	3	1	662	1	0	0	0	0	1	0	0	0	3844	1087	38	1	1309	1	CR2	1	207644142	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	89108890	207644142	41606479	7	39966											
OR2T3	343173	broad.mit.edu	37	1	248637594	248637594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	248637594	A	G	248637594	3	3	662	1	0	0	0	0	1	0	0	0	11030	246	9	3	945	3	OR2T3	1	248637594	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	40993452	248637594	613027	8	39967											
LPIN1	23175	broad.mit.edu	37	2	11922578	11922578	+	Silent	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	11922578	C	T	11922578	2	4	662	1	0	0	0	0	0	0	0	1	8925	668	24	2		2	LPIN1	2	11922578	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10		11922578	231276795	9	39968											
CCDC88A	55704	broad.mit.edu	37	2	55544911	55544911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	55544911	G	T	55544911	3	4	662	1	0	0	0	0	1	0	0	0	2865	1357	47	4	2276	4	CCDC88A	2	55544911	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	43622333	55544911	187654462	10	39969											
FSIP2	401024	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	186689203	186689203	+	Silent	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	186689203	A	G	186689203	2	3	662	1	0	0	0	0	0	0	0	1	6082	417	15	3		3	FSIP2	2	186689203	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	131144292	186689203	56510170	11	39970											
HECW2	57520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	197106878	197106878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	197106878	C	T	197106878	3	4	662	1	0	0	0	0	1	0	0	0	7050	893	31	1	1178	1	HECW2	2	197106878	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	10417675	197106878	46092495	12	39971											
SLC6A6	6533	broad.mit.edu;bcgsc.ca	37	3	14513818	14513818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	14513818	A	G	14513818	3	3	662	1	0	0	0	0	1	0	0	0	14701	333	12	3	1236	3	SLC6A6	3	14513818	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10		14513818	183508612	13	39972											
SCN10A	6336	broad.mit.edu;mdanderson.org	37	3	38739266	38739266	+	Silent	SNP	G	G	A	rs111535651	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	38739266	G	A	38739266	2	1	662	1	0	0	0	0	0	0	0	1	13925	1103	39	1		1	SCN10A	3	38739266	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	24225448	38739266	159283164	14	39973											
LYZL4	131375	broad.mit.edu	37	3	42438812	42438812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	42438812	C	T	42438812	3	4	662	1	0	0	0	0	1	0	0	0	9140	652	23	1	58	1	LYZL4	3	42438812	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	3699546	42438812	155583618	15	39974											
CELSR3	1951	hgsc.bcm.edu;mdanderson.org	37	3	48682486	48682486	+	Missense_Mutation	SNP	C	C	A	rs147124288	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	48682486	C	A	48682486	3	1	662	1	0	0	0	0	1	0	0	0	3225	536	19	4	2028	4	CELSR3	3	48682486	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	6243674	48682486	149339944	16	39975											
CCDC80	151887	broad.mit.edu	37	3	112357042	112357042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	112357042	T	C	112357042	3	2	662	1	0	0	0	0	1	0	0	0	2856	1792	62	3	1169	3	CCDC80	3	112357042	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	63674556	112357042	85665388	17	39976											
GRAMD1C	54762	ucsc.edu	37	3	113594422	113594422	+	Silent	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	113594422	A	G	113594422	2	3	662	1	0	0	0	0	0	0	0	1	6756	330	12	3		3	GRAMD1C	3	113594422	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	1237380	113594422	84428008	18	39977											
ATR	545	bcgsc.ca	37	3	142180902	142180902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	142180902	T	C	142180902	3	2	662	1	0	0	0	0	1	0	0	0	1204	1617	56	3	886	3	ATR	3	142180902	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	28586480	142180902	55841528	19	39978											
B3GALNT1	8706	broad.mit.edu	37	3	160804293	160804293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	160804293	C	T	160804293	3	4	662	1	0	0	0	0	1	0	0	0	1245	507	18	2	749	2	B3GALNT1	3	160804293	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	18623391	160804293	37218137	20	39979											
MUC20	200958	mdanderson.org	37	3	195453332	195453332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	195453332	G	A	195453332	3	1	662	1	0	0	0	0	1	0	0	0	9983	1000	35	2	1355	2	MUC20	3	195453332	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	34649039	195453332	2569098	21	39980											
GABRA4	2557	broad.mit.edu;mdanderson.org	37	4	46976325	46976325	+	Silent	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	46976325	C	T	46976325	2	4	662	1	0	0	0	0	0	0	0	1	6170	871	31	1		1	GABRA4	4	46976325	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10		46976325	144177951	22	39981											
PPAT	5471	broad.mit.edu;mdanderson.org	37	4	57265347	57265347	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	57265347	C	G	57265347	3	3	662	1	0	0	0	0	1	0	0	0	12309	922	32	4	331	4	PPAT	4	57265347	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	10289022	57265347	133888929	23	39982											
PRDM8	56978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	81124587	81124587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	81124587	G	C	81124587	3	2	662	1	0	0	0	0	1	0	0	0	12472	1339	47	4	1981	4	PRDM8	4	81124587	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	23859240	81124587	110029689	24	39983											
BBS12	166379	broad.mit.edu	37	4	123663959	123663959	+	Silent	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	123663959	T	C	123663959	2	2	662	1	0	0	0	0	0	0	0	1	1337	1644	57	3		3	BBS12	4	123663959	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	42539372	123663959	67490317	25	39984											
SORBS2	8470	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	186560084	186560084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	186560084	G	A	186560084	3	1	662	1	0	0	0	0	1	0	0	0	14941	1115	39	1	2868	1	SORBS2	4	186560084	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	62896125	186560084	4594192	26	39985											
FAT1	2195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	4	187527260	187527260	+	Silent	SNP	G	G	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	187527260	G	T	187527260	2	4	662	1	0	0	0	0	0	0	0	1	5696	1103	39	4		4	FAT1	4	187527260	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	967176	187527260	3627016	27	39986											
PCSK1	5122	broad.mit.edu	37	5	95746664	95746664	+	Silent	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	95746664	G	A	95746664	2	1	662	1	0	0	0	0	0	0	0	1	11607	1049	37	1		1	PCSK1	5	95746664	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10		95746664	85168596	28	39987											
FBXL17	64839	broad.mit.edu	37	5	107700539	107700539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	107700539	A	G	107700539	3	3	662	1	0	0	0	0	1	0	0	0	5720	72	3	3	859	3	FBXL17	5	107700539	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	11953875	107700539	73214721	29	39988											
PCDHB9	56127	broad.mit.edu;mdanderson.org	37	5	140569001	140569001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	140569001	T	C	140569001	3	2	662	1	0	0	0	0	1	0	0	0	11556	1538	54	3	2111	3	PCDHB9	5	140569001	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	32868462	140569001	40346259	30	39989											
FRK	2444	broad.mit.edu	37	6	116325094	116325094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	116325094	C	T	116325094	3	4	662	1	0	0	0	0	1	0	0	0	6055	652	23	1	1133	1	FRK	6	116325094	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10		116325094	54789973	31	39990											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	152652931	152652931	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	152652931	C	G	152652931	3	3	662	1	0	0	0	0	1	0	0	0	15457	913	32	4	13853	4	SYNE1	6	152652931	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	36327837	152652931	18462136	32	39991											
WIPF3	644150	mdanderson.org	37	7	29923572	29923572	+	Silent	SNP	T	T	C	rs28439342	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	29923572	T	C	29923572	2	2	662	1	0	0	0	0	0	0	0	1	17381	1403	49	3		3	WIPF3	7	29923572	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10		29923572	129215091	33	39992											
PCLO	27445	broad.mit.edu	37	7	82585926	82585926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	82585926	T	C	82585926	3	2	662	1	0	0	0	0	1	0	0	0	11590	1667	58	3	11186	3	PCLO	7	82585926	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	52662354	82585926	76552737	34	39993											
MET	4233	broad.mit.edu	37	7	116411695	116411695	+	Silent	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	116411695	A	G	116411695	2	3	662	1	0	0	0	0	0	0	0	1	9492	243	9	3		3	MET	7	116411695	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	33825769	116411695	42726968	35	39994											
SORBS3	10174	bcgsc.ca	37	8	22426778	22426778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	22426778	T	C	22426778	3	2	662	1	0	0	0	0	1	0	0	0	14942	1609	56	3	1485	3	SORBS3	8	22426778	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		22426778	123937244	36	39995											
KCNS2	3788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	99440360	99440360	+	Silent	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	99440360	G	A	99440360	2	1	662	1	0	0	0	0	0	0	0	1	8096	1074	38	1		1	KCNS2	8	99440360	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	77013582	99440360	46923662	37	39996											
OXR1	55074	broad.mit.edu	37	8	107715150	107715150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	107715150	T	C	107715150	3	2	662	1	0	0	0	0	1	0	0	0	11341	1696	59	3	921	3	OXR1	8	107715150	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	8274790	107715150	38648872	38	39997											
ST3GAL1	6482	broad.mit.edu;mdanderson.org;bcgsc.ca	37	8	134474162	134474162	+	Missense_Mutation	SNP	T	T	G	rs146292003		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	134474162	T	G	134474162	3	3	662	1	0	0	0	0	1	0	0	0	15226	1638	57	5	225	5	ST3GAL1	8	134474162	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	26759012	134474162	11889860	39	39998											
CYP11B1	1584	mdanderson.org	37	8	143957129	143957129	+	Silent	SNP	G	G	T	rs61752786	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	143957129	G	T	143957129	2	4	662	1	0	0	0	0	0	0	0	1	4147	1101	38	4		4	CYP11B1	8	143957129	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	9482967	143957129	2406893	40	39999			1	86		2	2	23	N	G_A	7.39069e-05
CYP11B1	1584	mdanderson.org	37	8	143957151	143957151	+	Silent	SNP	A	A	C	rs6437	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	143957151	A	C	143957151	2	2	662	1	0	0	0	0	0	0	0	1	4147	146	6	5		5	CYP11B1	8	143957151	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	22	143957151	2406871	41	40000			1	86		2	2	23	N	G_A	7.39069e-05
ANKRD20A3	441425	mdanderson.org	37	9	67938655	67938655	+	Missense_Mutation	SNP	T	T	C	rs199656293	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	67938655	T	C	67938655	3	2	662	1	0	0	0	0	1	0	0	0	649	1435	50	3	5876	3	ANKRD20A3	9	67938655	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		67938655	73274776	42	40001											
SETX	23064	broad.mit.edu;mdanderson.org	37	9	135203956	135203956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	135203956	C	T	135203956	3	4	662	1	0	0	0	0	1	0	0	0	14154	536	19	1	5072	1	SETX	9	135203956	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	67265301	135203956	6009475	43	40002											
KIF5B	3799	broad.mit.edu;mdanderson.org;bcgsc.ca	37	10	32321694	32321694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	32321694	T	A	32321694	3	1	662	1	0	0	0	0	1	0	0	0	8313	1838	64	5	1629	5	KIF5B	10	32321694	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		32321694	103213053	44	40003											
RRP12	23223	broad.mit.edu	37	10	99130534	99130534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	99130534	A	G	99130534	3	3	662	1	0	0	0	0	1	0	0	0	13699	420	15	3	1423	3	RRP12	10	99130534	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	66808840	99130534	36404213	45	40004											
MKI67	4288	broad.mit.edu	37	10	129899864	129899864	+	Silent	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	129899864	T	C	129899864	2	2	662	1	0	0	0	0	0	0	0	1	9605	1838	64	3		3	MKI67	10	129899864	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	30769330	129899864	5634883	46	40005											
MUC5B	727897	mdanderson.org	37	11	1268402	1268402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	1268402	G	A	1268402	3	1	662	1	0	0	0	0	1	0	0	0	9986	971	34	2	10423	2	MUC5B	11	1268402	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10		1268402	133738114	47	40006											
OR52D1	390066	broad.mit.edu;mdanderson.org	37	11	5510050	5510050	+	Silent	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	5510050	T	C	5510050	2	2	662	1	0	0	0	0	0	0	0	1	11121	1442	50	3		3	OR52D1	11	5510050	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	4241648	5510050	129496466	48	40007											
OR56A3	390083	broad.mit.edu	37	11	5969446	5969446	+	Silent	SNP	C	C	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	5969446	C	A	5969446	2	1	662	1	0	0	0	0	0	0	0	1	11141	610	22	4		4	OR56A3	11	5969446	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	459396	5969446	129037070	49	40008											
DNHD1	144132	broad.mit.edu	37	11	6566233	6566234	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	6566234	-	C	6566233	7	5	662	1	0	1	1	0	0	0	0	0	4670	159	6	0	4147	0	DNHD1	11	6566233	Frame_Shift_Ins	INS	-	TCGA-KL-8324-01A-11D-2310-10	596787	6566233	128440283	50	40009											
KCNJ11	3767	broad.mit.edu	37	11	17408682	17408682	+	Silent	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	17408682	T	C	17408682	2	2	662	1	0	0	0	0	0	0	0	1	8052	1509	53	3		3	KCNJ11	11	17408682	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	10842449	17408682	117597834	51	40010											
TMEM86A	144110	broad.mit.edu	37	11	18723333	18723334	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	18723334	-	G	18723333	7	5	662	1	0	1	1	0	0	0	0	0	16220	1580	55	0	510	0	TMEM86A	11	18723333	Frame_Shift_Ins	INS	-	TCGA-KL-8324-01A-11D-2310-10	1314651	18723333	116283183	52	40011											
MPPED2	744	broad.mit.edu	37	11	30601906	30601906	+	Silent	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	30601906	A	G	30601906	2	3	662	1	0	0	0	0	0	0	0	1	9749	242	9	3		3	MPPED2	11	30601906	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	11878573	30601906	104404610	53	40012											
OR4A5	81318	mdanderson.org	37	11	51412043	51412043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	51412043	C	T	51412043	3	4	662	1	0	0	0	0	1	0	0	0	11050	478	17	2	598	2	OR4A5	11	51412043	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	20810137	51412043	83594473	54	40013											
OR5M8	219484	mdanderson.org	37	11	56258310	56258310	+	Silent	SNP	C	C	T	rs150358569	bycluster;byfrequency;by1000genomes	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	56258310	C	T	56258310	2	4	662	1	0	0	0	0	0	0	0	1	11183	639	23	1		1	OR5M8	11	56258310	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	4846267	56258310	78748206	55	40014											
EHBP1L1	254102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	65350193	65350193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	65350193	G	T	65350193	3	4	662	1	0	0	0	0	1	0	0	0	4978	1174	41	4	2084	4	EHBP1L1	11	65350193	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	9091883	65350193	69656323	56	40015											
CLPB	81570	hgsc.bcm.edu;bcgsc.ca	37	11	72028203	72028203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	72028203	C	T	72028203	3	4	662	1	0	0	0	0	1	0	0	0	3553	884	31	1	1138	1	CLPB	11	72028203	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	6678010	72028203	62978313	57	40016											
ATM	472	broad.mit.edu	37	11	108216609	108216609	+	Missense_Mutation	SNP	C	C	T	rs141534716		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	108216609	C	T	108216609	3	4	662	1	0	0	0	0	1	0	0	0	1109	536	19	1	8784	1	ATM	11	108216609	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	36188406	108216609	26789907	58	40017											
OR8D4	338662	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	123777314	123777314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	123777314	T	A	123777314	3	1	662	1	0	0	0	0	1	0	0	0	11240	1464	51	5	178	5	OR8D4	11	123777314	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	15560705	123777314	11229202	59	40018											
VWA5A	4013	broad.mit.edu	37	11	124005629	124005629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	124005629	G	A	124005629	3	1	662	1	0	0	0	0	1	0	0	0	17254	1377	48	2	1289	2	VWA5A	11	124005629	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	228315	124005629	11000887	60	40019											
OR8B4	283162	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	11	124294671	124294671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	124294671	C	T	124294671	3	4	662	1	0	0	0	0	1	0	0	0	11236	681	24	2	834	2	OR8B4	11	124294671	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	289042	124294671	10711845	61	40020											
FOXJ2	55810	broad.mit.edu;mdanderson.org;bcgsc.ca	37	12	8196571	8196571	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	8196571	G	C	8196571	3	2	662	1	0	0	0	0	1	0	0	0	6019	1175	41	4	516	4	FOXJ2	12	8196571	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10		8196571	125655324	62	40021											
TAS2R43	259289	mdanderson.org	37	12	11244435	11244435	+	Missense_Mutation	SNP	T	T	C	rs111525185	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	11244435	T	C	11244435	3	2	662	1	0	0	0	0	1	0	0	0	15593	1435	50	3	539	3	TAS2R43	12	11244435	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	3047864	11244435	122607460	63	40022											
ATF7IP	55729	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	14589046	14589046	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	14589046	T	G	14589046	3	3	662	1	0	0	0	0	1	0	0	0	1087	1841	64	5	1662	5	ATF7IP	12	14589046	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	3344611	14589046	119262849	64	40023											
DDX11	1663	mdanderson.org	37	12	31247692	31247692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	31247692	C	T	31247692	3	4	662	1	0	0	0	0	1	0	0	0	4345	536	19	1	1468	1	DDX11	12	31247692	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	16658646	31247692	102604203	65	40024											
OR10A7	121364	broad.mit.edu	37	12	55615316	55615316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	55615316	G	A	55615316	3	1	662	1	0	0	0	0	1	0	0	0	10902	1349	47	2	510	2	OR10A7	12	55615316	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	24367624	55615316	78236579	66	40025											
IKBIP	121457	mdanderson.org	37	12	99019897	99019897	+	Silent	SNP	C	C	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	99019897	C	A	99019897	2	1	662	1	0	0	0	0	0	0	0	1	7616	465	17	4		4	IKBIP	12	99019897	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	43404581	99019897	34831998	67	40026											
CCDC64	92558	broad.mit.edu	37	12	120510407	120510407	+	Silent	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	120510407	G	A	120510407	2	1	662	1	0	0	0	0	0	0	0	1	2837	1103	39	1		1	CCDC64	12	120510407	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	21490510	120510407	13341488	68	40027											
POLR1D	51082	broad.mit.edu;mdanderson.org	37	13	28197257	28197257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	28197257	C	T	28197257	3	4	662	1	0	0	0	0	1	0	0	0	12219	594	21	2	278	2	POLR1D	13	28197257	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10		28197257	86972621	69	40028											
NEK5	341676	broad.mit.edu	37	13	52686431	52686431	+	Silent	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	52686431	T	C	52686431	2	2	662	1	0	0	0	0	0	0	0	1	10334	1722	60	3		3	NEK5	13	52686431	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	24489174	52686431	62483447	70	40029											
GNPNAT1	64841	broad.mit.edu	37	14	53250171	53250172	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	-	53250172	TC	-	53250171	7	5	662	1	0	1	0	1	0	0	0	0	6551	1667	58	0	383	0	GNPNAT1	14	53250171	Frame_Shift_Del	DEL	TC	TCGA-KL-8324-01A-11D-2310-10		53250171	54099369	71	40030											
AHSA1	10598	broad.mit.edu	37	14	77926107	77926111	+	Frame_Shift_Del	DEL	CTTAT	CTTAT	-	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	CTTAT	CTTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	-	77926111	CTTAT	-	77926107	7	5	662	1	0	1	0	1	0	0	0	0	418	565	20	0	235	0	AHSA1	14	77926107	Frame_Shift_Del	DEL	CTTAT	TCGA-KL-8324-01A-11D-2310-10	24675936	77926107	29423433	72	40031	508	2									
AHSA1	10598	bcgsc.ca	37	14	77926108	77926112	+	Frame_Shift_Del	DEL	CTTAT	CTTAT	-	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	CTTAT	CTTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	-	77926112	CTTAT	-	77926108	7	5	662	1	0	1	0	1	0	0	0	0	418	1609	56	0	236	0	AHSA1	14	77926108	Frame_Shift_Del	DEL	CTTAT	TCGA-KL-8324-01A-11D-2310-10	1	77926108	29423432	73	40032	508	2									
OTUD7A	161725	broad.mit.edu	37	15	31779681	31779681	+	Silent	SNP	G	G	A	rs200079505		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	31779681	G	A	31779681	2	1	662	1	0	0	0	0	0	0	0	1	11325	1136	40	1		1	OTUD7A	15	31779681	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10		31779681	70751711	74	40033											
FAM98B	283742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	38773557	38773557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	38773557	C	T	38773557	3	4	662	1	0	0	0	0	1	0	0	0	5664	536	19	1	820	1	FAM98B	15	38773557	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	6993876	38773557	63757835	75	40034											
CASC5	57082	broad.mit.edu	37	15	40943724	40943724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	40943724	A	G	40943724	3	3	662	1	0	0	0	0	1	0	0	0	2665	449	16	3	6424	3	CASC5	15	40943724	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	2170167	40943724	61587668	76	40035											
AGBL1	123624	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	15	86808005	86808005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	86808005	G	A	86808005	3	1	662	1	0	0	0	0	1	0	0	0	375	1377	48	2	1499	2	AGBL1	15	86808005	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	45864281	86808005	15723387	77	40036											
DCTPP1	79077	broad.mit.edu	37	16	30435593	30435593	+	Silent	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	30435593	C	T	30435593	2	4	662	1	0	0	0	0	0	0	0	1	4314	639	23	1		1	DCTPP1	16	30435593	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10		30435593	59919160	78	40037											
ITGAM	3684	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	31283282	31283282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	31283282	A	G	31283282	3	3	662	1	0	0	0	0	1	0	0	0	7894	275	10	3	699	3	ITGAM	16	31283282	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	847689	31283282	59071471	79	40038											
ANKRD11	29123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	89349348	89349348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	89349348	A	T	89349348	3	4	662	1	0	0	0	0	1	0	0	0	639	275	10	5	4409	5	ANKRD11	16	89349348	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	58066066	89349348	1005405	80	40039											
ZZEF1	23140	ucsc.edu;bcgsc.ca	37	17	3981271	3981271	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	3981271	C	T	3981271	4	4	662	1	0	0	0	0	0	1	0	0	18267	508	18	2	6138	2	ZZEF1	17	3981271	Nonsense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10		3981271	77213939	81	40040											
POLR2A	5430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7400726	7400726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	7400726	C	T	7400726	3	4	662	1	0	0	0	0	1	0	0	0	12221	759	27	1	893	1	POLR2A	17	7400726	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	3419455	7400726	73794484	82	40041											
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666	alternate_allele	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	7578190	T	C	7578190	3	2	662	1	0	0	0	0	1	0	0	0	16393	1406	49	3	635	3	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	177464	7578190	73617020	83	40042											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7578280	7578280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	7578280	G	A	7578280	3	1	662	1	0	0	0	0	1	0	0	0	16393	1000	35	2	725	2	TP53	17	7578280	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	90	7578280	73616930	84	40043											
KRTAP1-1	81851	mdanderson.org	37	17	39197485	39197485	+	Silent	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	39197485	A	G	39197485	2	3	662	1	0	0	0	0	0	0	0	1	8509	157	6	3		3	KRTAP1-1	17	39197485	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	31619205	39197485	41997725	85	40044											
CDC27	996	hgsc.bcm.edu	37	17	45232055	45232055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	45232055	C	T	45232055	3	4	662	1	0	0	0	0	1	0	0	0	3068	661	23	1	1600	1	CDC27	17	45232055	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	6034570	45232055	35963155	86	40045											
PTRH2	51651	broad.mit.edu;mdanderson.org	37	17	57775085	57775085	+	Silent	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	57775085	C	T	57775085	2	4	662	1	0	0	0	0	0	0	0	1	12830	564	20	2		2	PTRH2	17	57775085	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	12543030	57775085	23420125	87	40046											
DNAI2	64446	broad.mit.edu	37	17	72306262	72306262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	72306262	T	C	72306262	3	2	662	1	0	0	0	0	1	0	0	0	4612	1551	54	3	1492	3	DNAI2	17	72306262	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	14531177	72306262	8888948	88	40047											
PIAS2	9063	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	18	44409771	44409771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	44409771	T	A	44409771	3	1	662	1	0	0	0	0	1	0	0	0	11883	1435	50	5	698	5	PIAS2	18	44409771	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		44409771	33667477	89	40048											
MUC16	94025	mdanderson.org	37	19	8999462	8999462	+	Silent	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	8999462	C	T	8999462	2	4	662	1	0	0	0	0	0	0	0	1	9980	813	29	2		2	MUC16	19	8999462	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10		8999462	50129521	90	40049											
NPHS1	4868	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	36340211	36340211	+	Missense_Mutation	SNP	C	C	T	rs149649169		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	36340211	C	T	36340211	3	4	662	1	0	0	0	0	1	0	0	0	10589	652	23	1	3050	1	NPHS1	19	36340211	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	27340749	36340211	22788772	91	40050											
NUCB1	4924	bcgsc.ca	37	19	49416771	49416771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	49416771	A	G	49416771	3	3	662	1	0	0	0	0	1	0	0	0	10725	333	12	3	729	3	NUCB1	19	49416771	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	13076560	49416771	9712212	92	40051											
RCN3	57333	broad.mit.edu	37	19	50031830	50031830	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	-	50031830	T	-	50031830	7	5	662	1	0	1	0	1	0	0	0	0	13194	1696	59	0	103	0	RCN3	19	50031830	Frame_Shift_Del	DEL	T	TCGA-KL-8324-01A-11D-2310-10	615059	50031830	9097153	93	40052											
PRKCG	5582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	54394940	54394940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	54394940	G	A	54394940	3	1	662	1	0	0	0	0	1	0	0	0	12522	1145	40	1	564	1	PRKCG	19	54394940	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	4363110	54394940	4734043	94	40053											
LILRA4	23547	broad.mit.edu	37	19	54848817	54848817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	54848817	C	T	54848817	3	4	662	1	0	0	0	0	1	0	0	0	8794	652	23	1	709	1	LILRA4	19	54848817	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	453877	54848817	4280166	95	40054											
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56466067	56466067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	56466067	G	A	56466067	3	1	662	1	0	0	0	0	1	0	0	0	10490	1117	39	1	653	1	NLRP8	19	56466067	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	1617250	56466067	2662916	96	40055											
RASSF2	9770	bcgsc.ca	37	20	4773205	4773205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	4773205	T	C	4773205	3	2	662	1	0	0	0	0	1	0	0	0	13099	1667	58	3	652	3	RASSF2	20	4773205	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		4773205	58252315	97	40056											
KIAA1755	85449	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	36859706	36859706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	36859706	C	T	36859706	3	4	662	1	0	0	0	0	1	0	0	0	8264	652	23	1	1873	1	KIAA1755	20	36859706	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	32086501	36859706	26165814	98	40057											
NTSR1	4923	ucsc.edu	37	20	61340870	61340870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	61340870	A	G	61340870	3	3	662	1	0	0	0	0	1	0	0	0	10717	159	6	3	313	3	NTSR1	20	61340870	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	24481164	61340870	1684650	99	40058											
GGT1	2678	mdanderson.org	37	22	25023406	25023406	+	Missense_Mutation	SNP	G	G	A	rs201401901	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	25023406	G	A	25023406	3	1	662	1	0	0	0	0	1	0	0	0	6368	1087	38	1	1058	1	GGT1	22	25023406	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10		25023406	26281160	100	40059											
TMEM184B	25829	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	38621520	38621520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	C	38621520	T	C	38621520	3	2	662	1	0	0	0	0	1	0	0	0	16117	1638	57	3	537	3	TMEM184B	22	38621520	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	13598114	38621520	12683046	101	40060											
VCX3A	51481	mdanderson.org	37	X	6451843	6451843	+	Silent	SNP	G	G	A	rs199720302		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	6451843	G	A	6451843	2	1	662	1	0	0	0	0	0	0	0	1	17156	1194	42	2		2	VCX3A	23	6451843	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10		6451843	148818717	102	40061											
ARHGAP36	158763	broad.mit.edu;mdanderson.org	37	X	130219620	130219620	+	Silent	SNP	C	C	A	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	A	130219620	C	A	130219620	2	1	662	1	0	0	0	0	0	0	0	1	883	668	24	4		4	ARHGAP36	23	130219620	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	123767777	130219620	25050940	103	40062	509	2									
ARHGAP36	158763	broad.mit.edu	37	X	130219622	130219622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	130219622	G	T	130219622	3	4	662	1	0	0	0	0	1	0	0	0	883	1319	46	4	1042	4	ARHGAP36	23	130219622	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	2	130219622	25050938	104	40063	509	2									
MCF2	4168	broad.mit.edu;mdanderson.org	37	X	138698453	138698453	+	Silent	SNP	A	A	G	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	G	138698453	A	G	138698453	2	3	662	1	0	0	0	0	0	0	0	1	9385	291	11	3		3	MCF2	23	138698453	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	8478831	138698453	16572107	105	40064											
SLC6A8	6535	broad.mit.edu	37	X	152956889	152956889	+	Silent	SNP	C	C	T	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef	T	152956889	C	T	152956889	2	4	662	1	0	0	0	0	0	0	0	1	14703	668	24	2		2	SLC6A8	23	152956889	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	14258436	152956889	2313671	106	40065											
PRAMEF11	440560	mdanderson.org	37	1	12885127	12885127	+	Silent	SNP	G	G	A	rs78200253		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	12885127	G	A	12885127	2	1	663	1	0	0	0	0	0	0	0	1	12437	1136	40	1		1	PRAMEF11	1	12885127	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10		12885127	236365494	1	40066											
CROCC	9696	mdanderson.org	37	1	17277573	17277573	+	Missense_Mutation	SNP	C	C	T	rs3969856		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	17277573	C	T	17277573	3	4	663	1	0	0	0	0	1	0	0	0	3895	759	27	1	3040	1	CROCC	1	17277573	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	4392446	17277573	231973048	2	40067											
CD52	1043	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	26644516	26644516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	26644516	G	A	26644516	3	1	663	1	0	0	0	0	1	0	0	0	3024	1087	38	1	10	1	CD52	1	26644516	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	9366943	26644516	222606105	3	40068											
SPTA1	6708	bcgsc.ca	37	1	158646033	158646033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	158646033	T	C	158646033	3	2	663	1	0	0	0	0	1	0	0	0	15128	1435	50	3	6429	3	SPTA1	1	158646033	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	132001517	158646033	90604588	4	40069											
C1orf129	80133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	170993854	170993854	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	170993854	A	T	170993854	3	4	663	1	0	0	0	0	1	0	0	0	1998	14	1	5	2322	5	C1orf129	1	170993854	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	12347821	170993854	78256767	5	40070											
SOX13	9580	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204092909	204092909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	204092909	A	G	204092909	3	3	663	1	0	0	0	0	1	0	0	0	14957	43	2	3	1394	3	SOX13	1	204092909	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	33099055	204092909	45157712	6	40071											
BIRC6	57448	hgsc.bcm.edu	37	2	32718631	32718631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	32718631	A	G	32718631	3	3	663	1	0	0	0	0	1	0	0	0	1438	449	16	3	8543	3	BIRC6	2	32718631	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10		32718631	210480742	7	40072											
NRP2	8828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	206605324	206605324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	206605324	C	T	206605324	3	4	663	1	0	0	0	0	1	0	0	0	10668	652	23	1	1258	1	NRP2	2	206605324	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	173886693	206605324	36594049	8	40073											
ITGA9	3680	broad.mit.edu	37	3	37523097	37523097	+	Silent	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	37523097	A	G	37523097	2	3	663	1	0	0	0	0	0	0	0	1	7890	86	3	3		3	ITGA9	3	37523097	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10		37523097	160499333	9	40074											
ROBO2	6092	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	77526693	77526693	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	77526693	C	T	77526693	4	4	663	1	0	0	0	0	0	1	0	0	13527	876	31	1	529	1	ROBO2	3	77526693	Nonsense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	40003596	77526693	120495737	10	40075											
MCM2	4171	broad.mit.edu	37	3	127317314	127317314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	127317314	C	T	127317314	3	4	663	1	0	0	0	0	1	0	0	0	9393	782	27	1	7	1	MCM2	3	127317314	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	49790621	127317314	70705116	11	40076											
MECOM	2122	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	168834235	168834235	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	168834235	A	C	168834235	3	2	663	1	0	0	0	0	1	0	0	0	9429	330	12	5	2334	5	MECOM	3	168834235	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	41516921	168834235	29188195	12	40077											
MCF2L2	23101	broad.mit.edu	37	3	183028733	183028733	+	Silent	SNP	T	T	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	183028733	T	C	183028733	2	2	663	1	0	0	0	0	0	0	0	1	9387	1722	60	3		3	MCF2L2	3	183028733	Silent	SNP	T	TCGA-KL-8325-01A-11D-2310-10	14194498	183028733	14993697	13	40078											
ETV5	2119	broad.mit.edu	37	3	185783822	185783822	+	Silent	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	185783822	A	G	185783822	2	3	663	1	0	0	0	0	0	0	0	1	5284	291	11	3		3	ETV5	3	185783822	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10	2755089	185783822	12238608	14	40079											
MUC4	4585	mdanderson.org	37	3	195506914	195506914	+	Missense_Mutation	SNP	G	G	A	rs186560307	byfrequency	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	195506914	G	A	195506914	3	1	663	1	0	0	0	0	1	0	0	0	9985	1000	35	2		2	MUC4	3	195506914	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	9723092	195506914	2515516	15	40080											
MUC4	4585	mdanderson.org	37	3	195507683	195507683	+	Missense_Mutation	SNP	C	C	T	rs71187742		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	195507683	C	T	195507683	3	4	663	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195507683	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	769	195507683	2514747	16	40081											
MUC4	4585	mdanderson.org	37	3	195515134	195515134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	195515134	G	T	195515134	3	4	663	1	0	0	0	0	1	0	0	0	9985	1000	35	4		4	MUC4	3	195515134	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	7451	195515134	2507296	17	40082											
ANKRD17	26057	hgsc.bcm.edu	37	4	73956951	73956951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	73956951	C	T	73956951	3	4	663	1	0	0	0	0	1	0	0	0	646	864	30	2	1441	2	ANKRD17	4	73956951	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		73956951	117197325	18	40083											
IRX2	153572	ucsc.edu	37	5	2748604	2748604	+	Silent	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	2748604	A	G	2748604	2	3	663	1	0	0	0	0	0	0	0	1	7851	262	10	3		3	IRX2	5	2748604	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10		2748604	178166656	19	40084											
NIPBL	25836	bcgsc.ca	37	5	37016193	37016193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	37016193	T	C	37016193	3	2	663	1	0	0	0	0	1	0	0	0	10435	1725	60	3	4783	3	NIPBL	5	37016193	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	34267589	37016193	143899067	20	40085											
SKIV2L2	23517	broad.mit.edu	37	5	54654428	54654428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	54654428	T	C	54654428	3	2	663	1	0	0	0	0	1	0	0	0	14373	1667	58	3	1619	3	SKIV2L2	5	54654428	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	17638235	54654428	126260832	21	40086											
PCDHA8	56140	broad.mit.edu;mdanderson.org	37	5	140221819	140221819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	140221819	C	T	140221819	3	4	663	1	0	0	0	0	1	0	0	0	11537	875	31	1	915	1	PCDHA8	5	140221819	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	85567391	140221819	40693441	22	40087											
FAM184A	79632	broad.mit.edu	37	6	119399412	119399413	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	119399413	-	C	119399412	7	5	663	1	0	1	1	0	0	0	0	0	5515	1203	42	0	3441	0	FAM184A	6	119399412	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10		119399412	51715655	23	40088											
FAM20C	56975	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	208958	208958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	208958	C	T	208958	3	4	663	1	0	0	0	0	1	0	0	0	5543	768	27	1	855	1	FAM20C	7	208958	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		208958	158929705	24	40089											
FKBP9	11328	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	7	33028128	33028128	+	Silent	SNP	G	G	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	33028128	G	A	33028128	2	1	663	1	0	0	0	0	0	0	0	1	5922	1161	41	2		2	FKBP9	7	33028128	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10	32819170	33028128	126110535	25	40090											
UPK3B	80761	hgsc.bcm.edu	37	7	76144557	76144557	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	76144557	C	G	76144557	3	3	663	1	0	0	0	0	1	0	0	0	17023	768	27	4	1050	4	UPK3B	7	76144557	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	43116429	76144557	82994106	26	40091											
NKX3-1	4824	broad.mit.edu	37	8	23538897	23538897	+	Missense_Mutation	SNP	C	C	T	rs150251660		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	23538897	C	T	23538897	3	4	663	1	0	0	0	0	1	0	0	0	10462	884	31	1	166	1	NKX3-1	8	23538897	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		23538897	122825125	27	40092											
SCARA5	286133	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	27779572	27779572	+	Silent	SNP	G	G	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	27779572	G	A	27779572	2	1	663	1	0	0	0	0	0	0	0	1	13893	1074	38	1		1	SCARA5	8	27779572	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10	4240675	27779572	118584450	28	40093											
ADAM2	2515	bcgsc.ca	37	8	39694680	39694680	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	39694680	A	T	39694680	3	4	663	1	0	0	0	0	1	0	0	0	241	449	16	5	2176	5	ADAM2	8	39694680	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	11915108	39694680	106669342	29	40094											
DPY19L4	286148	ucsc.edu	37	8	95793373	95793373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	95793373	T	C	95793373	3	2	663	1	0	0	0	0	1	0	0	0	4745	1696	59	3	1756	3	DPY19L4	8	95793373	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	56098693	95793373	50570649	30	40095											
PRSS3	5646	mdanderson.org	37	9	33796801	33796801	+	Splice_Site	SNP	G	G	A	rs143707562		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	33796801	G	A	33796801	5	1	663	1	0	0	0	0	0	0	1	0	12632	1159	40	1	422	1	PRSS3	9	33796801	Splice_Site	SNP	G	TCGA-KL-8325-01A-11D-2310-10		33796801	107416630	31	40096											
UBQLN1	29979	broad.mit.edu	37	9	86322497	86322498	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	86322498	-	C	86322497	7	5	663	1	0	1	1	0	0	0	0	0	16908	1551	54	0	1715	0	UBQLN1	9	86322497	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10	52525696	86322497	54890934	32	40097	510	5									
UBQLN1	29979	broad.mit.edu	37	9	86322500	86322500	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	-	86322500	G	-	86322500	7	5	663	1	0	1	0	1	0	0	0	0	16908	1087	38	0	1718	0	UBQLN1	9	86322500	Frame_Shift_Del	DEL	G	TCGA-KL-8325-01A-11D-2310-10	3	86322500	54890931	33	40098	510	5									
UBQLN1	29979	bcgsc.ca	37	9	86322501	86322501	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	-	86322501	G	-	86322501	7	5	663	1	0	1	0	1	0	0	0	0	16908	768	27	0	1719	0	UBQLN1	9	86322501	Frame_Shift_Del	DEL	G	TCGA-KL-8325-01A-11D-2310-10	1	86322501	54890930	34	40099	510	5									
UBQLN1	29979	broad.mit.edu	37	9	86322502	86322505	+	Frame_Shift_Del	DEL	GGAG	GGAG	-	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	GGAG	GGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	-	86322505	GGAG	-	86322502	7	5	663	1	0	1	0	1	0	0	0	0	16908	1103	39	0	1720	0	UBQLN1	9	86322502	Frame_Shift_Del	DEL	GGAG	TCGA-KL-8325-01A-11D-2310-10	1	86322502	54890929	35	40100	510	5									
UBQLN1	29979	bcgsc.ca	37	9	86322503	86322506	+	Frame_Shift_Del	DEL	GGAG	GGAG	-	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	GGAG	GGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	-	86322506	GGAG	-	86322503	7	5	663	1	0	1	0	1	0	0	0	0	16908	1174	41	0	1721	0	UBQLN1	9	86322503	Frame_Shift_Del	DEL	GGAG	TCGA-KL-8325-01A-11D-2310-10	1	86322503	54890928	36	40101	510	5									
INVS	27130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	103004868	103004868	+	Silent	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	103004868	C	T	103004868	2	4	663	1	0	0	0	0	0	0	0	1	7794	842	30	2		2	INVS	9	103004868	Silent	SNP	C	TCGA-KL-8325-01A-11D-2310-10	16682365	103004868	38208563	37	40102											
ITGA8	8516	broad.mit.edu;bcgsc.ca	37	10	15719635	15719635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	15719635	T	C	15719635	3	2	663	1	0	0	0	0	1	0	0	0	7889	1507	52	3	2659	3	ITGA8	10	15719635	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10		15719635	119815112	38	40103											
ACTA2	59	ucsc.edu	37	10	90701565	90701565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	90701565	A	G	90701565	3	3	663	1	0	0	0	0	1	0	0	0	192	304	11	3	722	3	ACTA2	10	90701565	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	74981930	90701565	44833182	39	40104											
MUC6	4588	mdanderson.org	37	11	1017710	1017710	+	Missense_Mutation	SNP	G	G	T	rs113964902		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	1017710	G	T	1017710	3	4	663	1	0	0	0	0	1	0	0	0	9987	1368	48	4	2240	4	MUC6	11	1017710	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10		1017710	133988806	40	40105											
MMP26	56547	ucsc.edu	37	11	5010912	5010912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	5010912	A	G	5010912	3	3	663	1	0	0	0	0	1	0	0	0	9670	304	11	3	140	3	MMP26	11	5010912	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	3993202	5010912	129995604	41	40106											
MRGPRX3	117195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	18159150	18159150	+	Missense_Mutation	SNP	G	G	A	rs139790666		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	18159150	G	A	18159150	3	1	663	1	0	0	0	0	1	0	0	0	9775	1087	38	1	403	1	MRGPRX3	11	18159150	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	13148238	18159150	116847366	42	40107											
OR5M1	390168	broad.mit.edu	37	11	56380362	56380363	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	-	56380363	TT	-	56380362	7	5	663	1	0	1	0	1	0	0	0	0	11179	1493	52	0	334	0	OR5M1	11	56380362	Frame_Shift_Del	DEL	TT	TCGA-KL-8325-01A-11D-2310-10	38221212	56380362	78626154	43	40108											
NCAPD3	23310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	134073605	134073605	+	Missense_Mutation	SNP	C	C	T	rs146266771	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	134073605	C	T	134073605	3	4	663	1	0	0	0	0	1	0	0	0	10213	478	17	2	3184	2	NCAPD3	11	134073605	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	77693243	134073605	932911	44	40109											
CACNA1C	775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	2783696	2783696	+	Silent	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	2783696	C	T	2783696	2	4	663	1	0	0	0	0	0	0	0	1	2542	854	30	2		2	CACNA1C	12	2783696	Silent	SNP	C	TCGA-KL-8325-01A-11D-2310-10		2783696	131068199	45	40110											
APOBEC1	339	broad.mit.edu;mdanderson.org	37	12	7802197	7802197	+	Silent	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	7802197	C	T	7802197	2	4	663	1	0	0	0	0	0	0	0	1	787	755	27	1		1	APOBEC1	12	7802197	Silent	SNP	C	TCGA-KL-8325-01A-11D-2310-10	5018501	7802197	126049698	46	40111											
PRH2	5555	broad.mit.edu	37	12	11083460	11083461	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	11083461	-	C	11083460	7	5	663	1	0	1	1	0	0	0	0	0	12493	1432	50	0	310	0	PRH2	12	11083460	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10	3281263	11083460	122768435	47	40112											
TAS2R30	259293	mdanderson.org	37	12	11286797	11286797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	11286797	A	G	11286797	3	3	663	1	0	0	0	0	1	0	0	0	15585	449	16	3	916	3	TAS2R30	12	11286797	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	203337	11286797	122565098	48	40113	511	2	1	87		3	2	24	N	T_A	5.052084e-05
TAS2R30	259293	mdanderson.org	37	12	11286807	11286807	+	Missense_Mutation	SNP	T	T	C	rs113282241		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	11286807	T	C	11286807	3	2	663	1	0	0	0	0	1	0	0	0	15585	1493	52	3	926	3	TAS2R30	12	11286807	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	10	11286807	122565088	49	40114	511	2	1	87		3	2	24	N	T_A	5.052084e-05
TAS2R30	259293	mdanderson.org	37	12	11286820	11286820	+	Silent	SNP	A	A	T	rs111958076		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	11286820	A	T	11286820	2	4	663	1	0	0	0	0	0	0	0	1	15585	10	1	5		5	TAS2R30	12	11286820	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10	13	11286820	122565075	50	40115			1	87		3	2	24	N	T_A	5.052084e-05
PCDH20	64881	broad.mit.edu;mdanderson.org	37	13	61989199	61989199	+	Silent	SNP	T	T	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	61989199	T	G	61989199	2	3	663	1	0	0	0	0	0	0	0	1	11522	1625	57	5		5	PCDH20	13	61989199	Silent	SNP	T	TCGA-KL-8325-01A-11D-2310-10		61989199	53180679	51	40116											
PLEKHH1	57475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	68052685	68052685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	68052685	C	A	68052685	4	1	663	1	0	0	0	0	0	1	0	0	12083	518	18	4	3910	4	PLEKHH1	14	68052685	Nonsense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		68052685	39296855	52	40117											
STON2	85439	broad.mit.edu	37	14	81737175	81737175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	81737175	C	T	81737175	3	4	663	1	0	0	0	0	1	0	0	0	15330	652	23	1	267	1	STON2	14	81737175	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	13684490	81737175	25612365	53	40118											
MAP1A	4130	hgsc.bcm.edu;bcgsc.ca	37	15	43819747	43819747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	43819747	C	T	43819747	3	4	663	1	0	0	0	0	1	0	0	0	9234	681	24	2	6078	2	MAP1A	15	43819747	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		43819747	58711645	54	40119											
GALK2	2585	broad.mit.edu	37	15	49493438	49493438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	49493438	A	G	49493438	3	3	663	1	0	0	0	0	1	0	0	0	6211	130	5	3	163	3	GALK2	15	49493438	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	5673691	49493438	53037954	55	40120											
ALDH1A3	220	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	101427815	101427815	+	Silent	SNP	C	C	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	101427815	C	A	101427815	2	1	663	1	0	0	0	0	0	0	0	1	492	668	24	4		4	ALDH1A3	15	101427815	Silent	SNP	C	TCGA-KL-8325-01A-11D-2310-10	51934377	101427815	1103577	56	40121											
CLN3	1201	broad.mit.edu	37	16	28503050	28503051	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	28503051	-	C	28503050	7	5	663	1	0	1	1	0	0	0	0	0	3545	72	3	0	1345	0	CLN3	16	28503050	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10		28503050	61851703	57	40122											
HAS3	3038	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	69148916	69148916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	69148916	G	A	69148916	3	1	663	1	0	0	0	0	1	0	0	0	6970	1203	42	2	1419	2	HAS3	16	69148916	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	40645866	69148916	21205837	58	40123											
LHX1	3975	broad.mit.edu	37	17	35297586	35297587	+	Splice_Site	INS	-	-	C	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	C	35297587	-	C	35297586	8	5	663	1	0	1	1	0	0	0	1	0	8777	1014	35	0	176	0	LHX1	17	35297586	Splice_Site	INS	-	TCGA-KL-8325-01A-11D-2310-10		35297586	45897624	59	40124											
ACBD4	79777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	43215198	43215198	+	Splice_Site	SNP	G	G	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	43215198	G	A	43215198	5	1	663	1	0	0	0	0	0	0	1	0	124	1275	44	2	634	2	ACBD4	17	43215198	Splice_Site	SNP	G	TCGA-KL-8325-01A-11D-2310-10	7917612	43215198	37980012	60	40125											
TTLL6	284076	broad.mit.edu	37	17	46882179	46882179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	46882179	A	G	46882179	3	3	663	1	0	0	0	0	1	0	0	0	16743	72	3	3	2534	3	TTLL6	17	46882179	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	3666981	46882179	34313031	61	40126											
SERPINB12	89777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	61223519	61223519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	61223519	C	T	61223519	3	4	663	1	0	0	0	0	1	0	0	0	14112	536	19	1	129	1	SERPINB12	18	61223519	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		61223519	16853729	62	40127											
CNDP1	84735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	72238436	72238436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	72238436	C	A	72238436	3	1	663	1	0	0	0	0	1	0	0	0	3595	595	21	4	798	4	CNDP1	18	72238436	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	11014917	72238436	5838812	63	40128											
MUC16	94025	broad.mit.edu	37	19	9054266	9054267	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	9054267	-	G	9054266	7	5	663	1	0	1	1	0	0	0	0	0	9980	291	11	0	12491	0	MUC16	19	9054266	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10		9054266	50074717	64	40129											
ZNF560	147741	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	9578613	9578613	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	9578613	A	T	9578613	3	4	663	1	0	0	0	0	1	0	0	0	18003	391	14	5	1366	5	ZNF560	19	9578613	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	524347	9578613	49550370	65	40130											
ZNF561	93134	broad.mit.edu	37	19	9724753	9724753	+	Missense_Mutation	SNP	G	G	A	rs144117005		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	9724753	G	A	9724753	3	1	663	1	0	0	0	0	1	0	0	0	18004	1144	40	1	1200	1	ZNF561	19	9724753	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	146140	9724753	49404230	66	40131											
OCEL1	79629	mdanderson.org	37	19	17337557	17337557	+	Missense_Mutation	SNP	G	G	T	rs10425488	byfrequency	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	17337557	G	T	17337557	3	4	663	1	0	0	0	0	1	0	0	0	10823	1087	38	4	131	4	OCEL1	19	17337557	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	7612804	17337557	41791426	67	40132											
PSG1	5669	mdanderson.org	37	19	43383680	43383680	+	Silent	SNP	G	G	T	rs1141653	byfrequency	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	T	43383680	G	T	43383680	2	4	663	1	0	0	0	0	0	0	0	1	12663	1161	41	4		4	PSG1	19	43383680	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10	26046123	43383680	15745303	68	40133											
SYMPK	8189	bcgsc.ca	37	19	46319186	46319186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	46319186	A	G	46319186	3	3	663	1	0	0	0	0	1	0	0	0	15451	72	3	3	222	3	SYMPK	19	46319186	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	2935506	46319186	12809797	69	40134											
GLTSCR2	29997	mdanderson.org	37	19	48258772	48258772	+	Silent	SNP	G	G	A	rs11083895	byfrequency	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	48258772	G	A	48258772	2	1	663	1	0	0	0	0	0	0	0	1	6482	1190	42	2		2	GLTSCR2	19	48258772	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10	1939586	48258772	10870211	70	40135											
TOP1	7150	broad.mit.edu	37	20	39708803	39708803	+	Silent	SNP	A	A	G	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	G	39708803	A	G	39708803	2	3	663	1	0	0	0	0	0	0	0	1	16375	272	10	3		3	TOP1	20	39708803	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10		39708803	23316717	71	40136											
MYT1	4661	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	62839675	62839675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	62839675	G	A	62839675	3	1	663	1	0	0	0	0	1	0	0	0	10113	1233	43	2	1144	2	MYT1	20	62839675	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	23130872	62839675	185845	72	40137											
PKDREJ	10343	broad.mit.edu	37	22	46657795	46657795	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7	A	46657795	T	A	46657795	3	1	663	1	0	0	0	0	1	0	0	0	11977	1432	50	5	5340	5	PKDREJ	22	46657795	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10		46657795	4646771	73	40138											
SPEN	23013	broad.mit.edu	37	1	16260459	16260459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	16260459	C	T	16260459	3	4	664	1	0	0	0	0	1	0	0	0	15050	594	21	2	7766	2	SPEN	1	16260459	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		16260459	232990162	1	40139											
SPATA21	374955	broad.mit.edu	37	1	16731518	16731518	+	Missense_Mutation	SNP	C	C	T	rs140528029	alternate_allele	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	16731518	C	T	16731518	3	4	664	1	0	0	0	0	1	0	0	0	15019	739	26	2	678	2	SPATA21	1	16731518	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	471059	16731518	232519103	2	40140											
AKR7L	246181	mdanderson.org	37	1	19600376	19600377	+	RNA	DNP	TT	TT	GC	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	GC	19600377	TT	GC	19600376	1	3	664	0	1	0	0	0	0	0	0	0	477	1493	52	5		5	AKR7L	1	19600376	RNA	DNP	TT	TCGA-KL-8326-01A-11D-2310-10	2868858	19600376	229650245	3	40141											
SYCP1	6847	broad.mit.edu	37	1	115418696	115418696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	115418696	A	G	115418696	3	3	664	1	0	0	0	0	1	0	0	0	15443	333	12	3	698	3	SYCP1	1	115418696	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	95818320	115418696	133831925	4	40142											
LCE3C	353144	broad.mit.edu	37	1	152573449	152573449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	152573449	G	A	152573449	3	1	664	1	0	0	0	0	1	0	0	0	8678	1203	42	2	244	2	LCE3C	1	152573449	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	37154753	152573449	96677172	5	40143											
SMYD1	150572	broad.mit.edu	37	2	88383883	88383883	+	Silent	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	88383883	C	T	88383883	2	4	664	1	0	0	0	0	0	0	0	1	14834	842	30	2		2	SMYD1	2	88383883	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10		88383883	154815490	6	40144											
REV1	51455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	100038086	100038086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	100038086	C	T	100038086	3	4	664	1	0	0	0	0	1	0	0	0	13252	478	17	2	2101	2	REV1	2	100038086	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	11654203	100038086	143161287	7	40145											
CREG2	200407	hgsc.bcm.edu	37	2	102000023	102000024	+	Missense_Mutation	DNP	GC	GC	TA	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	TA	102000024	GC	TA	102000023	3	4	664	1	0	0	0	0	1	0	0	0	3867	962	34	4	301	4	CREG2	2	102000023	Missense_Mutation	DNP	GC	TCGA-KL-8326-01A-11D-2310-10	1961937	102000023	141199350	8	40146											
LYPD1	116372	ucsc.edu	37	2	133427465	133427465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	133427465	A	G	133427465	3	3	664	1	0	0	0	0	1	0	0	0	9116	246	9	3	396	3	LYPD1	2	133427465	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	31427442	133427465	109771908	9	40147											
ECEL1	9427	broad.mit.edu;mdanderson.org;bcgsc.ca	37	2	233347864	233347864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	233347864	C	T	233347864	3	4	664	1	0	0	0	0	1	0	0	0	4893	739	26	2	835	2	ECEL1	2	233347864	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	99920399	233347864	9851509	10	40148											
ILKAP	80895	broad.mit.edu;mdanderson.org;bcgsc.ca	37	2	239090747	239090747	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	C	239090747	A	C	239090747	4	2	664	1	0	0	0	0	0	1	0	0	7721	224	8	5	399	5	ILKAP	2	239090747	Nonsense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	5742883	239090747	4108626	11	40149											
OXTR	5021	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	8809619	8809619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	8809619	G	T	8809619	3	4	664	1	0	0	0	0	1	0	0	0	11345	1252	44	4	922	4	OXTR	3	8809619	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10		8809619	189212811	12	40150											
CELSR3	1951	broad.mit.edu	37	3	48694660	48694661	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	48694661	-	G	48694660	7	5	664	1	0	1	1	0	0	0	0	0	3225	755	27	0	6204	0	CELSR3	3	48694660	Frame_Shift_Ins	INS	-	TCGA-KL-8326-01A-11D-2310-10	39885041	48694660	149327770	13	40151											
SIDT1	54847	broad.mit.edu	37	3	113342326	113342326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	113342326	G	T	113342326	3	4	664	1	0	0	0	0	1	0	0	0	14315	1232	43	4	2229	4	SIDT1	3	113342326	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	64647666	113342326	84680104	14	40152											
FAT4	79633	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	126369744	126369744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	126369744	G	A	126369744	3	1	664	1	0	0	0	0	1	0	0	0	5699	1087	38	1	7607	1	FAT4	4	126369744	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10		126369744	64784532	15	40153											
SPZ1	84654	mdanderson.org	37	5	79616400	79616400	+	Missense_Mutation	SNP	G	G	A	rs200562315	byfrequency	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	79616400	G	A	79616400	3	1	664	1	0	0	0	0	1	0	0	0	15139	1377	48	2	368	2	SPZ1	5	79616400	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10		79616400	101298860	16	40154											
MEGF10	84466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	126776527	126776527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	126776527	G	A	126776527	3	1	664	1	0	0	0	0	1	0	0	0	9467	1087	38	1	2396	1	MEGF10	5	126776527	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	47160127	126776527	54138733	17	40155											
TRIM15	89870	broad.mit.edu	37	6	30139748	30139748	+	Silent	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	30139748	C	T	30139748	2	4	664	1	0	0	0	0	0	0	0	1	16502	784	28	2		2	TRIM15	6	30139748	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10		30139748	140975319	18	40156											
HLA-DRB5	3127	mdanderson.org	37	6	32497900	32497900	+	Splice_Site	SNP	A	A	G	rs78612727	byfrequency	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	32497900	A	G	32497900	5	3	664	1	0	0	0	0	0	0	1	0	7216	405	14	3	722	3	HLA-DRB5	6	32497900	Splice_Site	SNP	A	TCGA-KL-8326-01A-11D-2310-10	2358152	32497900	138617167	19	40157											
HLA-DPB1	3115	broad.mit.edu	37	6	33048688	33048689	+	Frame_Shift_Ins	INS	-	-	A	rs141530233		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	33048689	-	A	33048688	7	5	664	1	0	1	1	0	0	0	0	0	7210	1116	39	0	346	0	HLA-DPB1	6	33048688	Frame_Shift_Ins	INS	-	TCGA-KL-8326-01A-11D-2310-10	550788	33048688	138066379	20	40158											
STXBP5	134957	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	147646106	147646106	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	147646106	C	A	147646106	4	1	664	1	0	0	0	0	0	1	0	0	15368	838	29	4	1880	4	STXBP5	6	147646106	Nonsense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	114597418	147646106	23468961	21	40159											
WBSCR17	64409	ucsc.edu	37	7	70800582	70800582	+	Silent	SNP	T	T	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	70800582	T	G	70800582	2	3	664	1	0	0	0	0	0	0	0	1	17276	1625	57	5		5	WBSCR17	7	70800582	Silent	SNP	T	TCGA-KL-8326-01A-11D-2310-10		70800582	88338081	22	40160											
STEAP1	26872	mdanderson.org	37	7	89791240	89791240	+	Missense_Mutation	SNP	A	A	G	rs199817828		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	89791240	A	G	89791240	3	3	664	1	0	0	0	0	1	0	0	0	15289	363	13	3	620	3	STEAP1	7	89791240	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	18990658	89791240	69347423	23	40161											
DOCK4	9732	bcgsc.ca	37	7	111512561	111512561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	111512561	A	G	111512561	3	3	664	1	0	0	0	0	1	0	0	0	4691	304	11	3	4236	3	DOCK4	7	111512561	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	21721321	111512561	47626102	24	40162											
ST7	7982	broad.mit.edu	37	7	116759716	116759716	+	Silent	SNP	T	T	C	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	C	116759716	T	C	116759716	2	2	664	1	0	0	0	0	0	0	0	1	15241	1596	56	3		3	ST7	7	116759716	Silent	SNP	T	TCGA-KL-8326-01A-11D-2310-10	5247155	116759716	42378947	25	40163											
FLNC	2318	broad.mit.edu	37	7	128483327	128483327	+	Silent	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	128483327	C	T	128483327	2	4	664	1	0	0	0	0	0	0	0	1	5942	535	19	1		1	FLNC	7	128483327	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10	11723611	128483327	30655336	26	40164											
KLRG2	346689	ucsc.edu;bcgsc.ca	37	7	139168253	139168253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	C	139168253	T	C	139168253	3	2	664	1	0	0	0	0	1	0	0	0	8429	1609	56	3	1113	3	KLRG2	7	139168253	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	10684926	139168253	19970410	27	40165											
MLL3	58508	broad.mit.edu;mdanderson.org;bcgsc.ca	37	7	151855973	151855973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	151855973	G	A	151855973	3	1	664	1	0	0	0	0	1	0	0	0	9629	1029	36	2	3154	2	MLL3	7	151855973	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	12687720	151855973	7282690	28	40166											
HSF1	3297	bcgsc.ca	37	8	145535243	145535243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	145535243	C	T	145535243	3	4	664	1	0	0	0	0	1	0	0	0	7402	643	23	1	705	1	HSF1	8	145535243	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		145535243	828779	29	40167											
MAPKAP1	79109	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	9	128246857	128246857	+	Silent	SNP	T	T	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	128246857	T	G	128246857	2	3	664	1	0	0	0	0	0	0	0	1	9295	1608	56	5		5	MAPKAP1	9	128246857	Silent	SNP	T	TCGA-KL-8326-01A-11D-2310-10		128246857	12966574	30	40168											
TSC1	7248	broad.mit.edu	37	9	135797337	135797349	+	Frame_Shift_Del	DEL	CGAGATAGACTTC	CGAGATAGACTTC	-	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	CGAGATAGACTTC	CGAGATAGACTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	-	135797349	CGAGATAGACTTC	-	135797337	7	5	664	1	0	1	0	1	0	0	0	0	16617	536	19	0	3030	0	TSC1	9	135797337	Frame_Shift_Del	DEL	CGAGATAGACTTC	TCGA-KL-8326-01A-11D-2310-10	7550480	135797337	5416094	31	40169	512	2									
TSC1	7248	bcgsc.ca	37	9	135797338	135797350	+	Frame_Shift_Del	DEL	CGAGATAGACTTC	CGAGATAGACTTC	-	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	CGAGATAGACTTC	CGAGATAGACTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	-	135797350	CGAGATAGACTTC	-	135797338	7	5	664	1	0	1	0	1	0	0	0	0	16617	1045	37	0	3031	0	TSC1	9	135797338	Frame_Shift_Del	DEL	CGAGATAGACTTC	TCGA-KL-8326-01A-11D-2310-10	1	135797338	5416093	32	40170	512	2									
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	16941101	16941101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	16941101	C	T	16941101	3	4	664	1	0	0	0	0	1	0	0	0	4053	478	17	2	2435	2	CUBN	10	16941101	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		16941101	118593646	33	40171											
SIRT1	23411	broad.mit.edu	37	10	69644881	69644883	+	In_Frame_Del	DEL	GGC	GGC	-	rs36062014	byfrequency;alternate_allele	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	-	69644883	GGC	-	69644881	7	5	664	1	0	1	0	1	0	0	0	0	14350	991	35	0	404	0	SIRT1	10	69644881	In_Frame_Del	DEL	GGC	TCGA-KL-8326-01A-11D-2310-10	52703780	69644881	65889866	34	40172											
AIFM2	84883	ucsc.edu	37	10	71877654	71877654	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	C	71877654	A	C	71877654	3	2	664	1	0	0	0	0	1	0	0	0	427	159	6	5	607	5	AIFM2	10	71877654	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	2232773	71877654	63657093	35	40173											
CYP26C1	340665	ucsc.edu	37	10	94825774	94825774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	C	94825774	T	C	94825774	3	2	664	1	0	0	0	0	1	0	0	0	4159	1551	54	3	941	3	CYP26C1	10	94825774	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	22948120	94825774	40708973	36	40174											
BLNK	29760	broad.mit.edu;hgsc.bcm.edu	37	10	98006782	98006782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	C	98006782	T	C	98006782	3	2	664	1	0	0	0	0	1	0	0	0	1447	1435	50	3	1363	3	BLNK	10	98006782	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	3181008	98006782	37527965	37	40175											
MTL5	9633	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	68514791	68514791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	68514791	G	A	68514791	3	1	664	1	0	0	0	0	1	0	0	0	9943	1116	39	1	1047	1	MTL5	11	68514791	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10		68514791	66491725	38	40176											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	103153739	103153739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	103153739	C	A	103153739	3	1	664	1	0	0	0	0	1	0	0	0	4848	564	20	4	11130	4	DYNC2H1	11	103153739	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	34638948	103153739	31852777	39	40177											
ZBTB16	7704	hgsc.bcm.edu;mdanderson.org	37	11	113934295	113934295	+	Silent	SNP	G	G	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	113934295	G	T	113934295	2	4	664	1	0	0	0	0	0	0	0	1	17538	1074	38	4		4	ZBTB16	11	113934295	Silent	SNP	G	TCGA-KL-8326-01A-11D-2310-10	10780556	113934295	21072221	40	40178											
OR6T1	219874	broad.mit.edu	37	11	123814285	123814285	+	Silent	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	123814285	C	T	123814285	2	4	664	1	0	0	0	0	0	0	0	1	11217	639	23	1		1	OR6T1	11	123814285	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10	9879990	123814285	11192231	41	40179											
OR10G8	219869	mdanderson.org	37	11	123900382	123900382	+	Missense_Mutation	SNP	C	C	T	rs73028928	byfrequency	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	123900382	C	T	123900382	3	4	664	1	0	0	0	0	1	0	0	0	10910	739	26	2	55	2	OR10G8	11	123900382	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	86097	123900382	11106134	42	40180											
LETMD1	25875	broad.mit.edu;bcgsc.ca	37	12	51449713	51449713	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	51449713	C	G	51449713	3	3	664	1	0	0	0	0	1	0	0	0	8743	855	30	4	587	4	LETMD1	12	51449713	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		51449713	82402182	43	40181											
NR4A1	3164	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	12	52448851	52448851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	52448851	G	A	52448851	3	1	664	1	0	0	0	0	1	0	0	0	10639	1174	41	2	741	2	NR4A1	12	52448851	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	999138	52448851	81403044	44	40182											
NBEA	26960	broad.mit.edu	37	13	36167554	36167554	+	Silent	SNP	A	A	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	36167554	A	G	36167554	2	3	664	1	0	0	0	0	0	0	0	1	10194	243	9	3		3	NBEA	13	36167554	Silent	SNP	A	TCGA-KL-8326-01A-11D-2310-10		36167554	79002324	45	40183											
RALGAPA1	253959	broad.mit.edu	37	14	36190999	36190999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	C	36190999	T	C	36190999	3	2	664	1	0	0	0	0	1	0	0	0	13026	1551	54	3	4202	3	RALGAPA1	14	36190999	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10		36190999	71158541	46	40184											
YLPM1	56252	broad.mit.edu	37	14	75301975	75301975	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	75301975	G	A	75301975	4	1	664	1	0	0	0	0	0	1	0	0	17498	1357	47	2	6380	2	YLPM1	14	75301975	Nonsense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	39110976	75301975	32047565	47	40185											
JAG2	3714	ucsc.edu	37	14	105614515	105614515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	C	105614515	T	C	105614515	3	2	664	1	0	0	0	0	1	0	0	0	7942	1667	58	3	1570	3	JAG2	14	105614515	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	30312540	105614515	1735025	48	40186											
CEP152	22995	broad.mit.edu	37	15	49052452	49052452	+	Silent	SNP	A	A	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	49052452	A	T	49052452	2	4	664	1	0	0	0	0	0	0	0	1	3250	175	7	5		5	CEP152	15	49052452	Silent	SNP	A	TCGA-KL-8326-01A-11D-2310-10		49052452	53478940	49	40187											
RFX7	64864	ucsc.edu	37	15	56388045	56388045	+	Silent	SNP	A	A	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	56388045	A	T	56388045	2	4	664	1	0	0	0	0	0	0	0	1	13281	59	3	5		5	RFX7	15	56388045	Silent	SNP	A	TCGA-KL-8326-01A-11D-2310-10	7335593	56388045	46143347	50	40188											
NOX5	79400	broad.mit.edu	37	15	69320701	69320701	+	Silent	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	69320701	C	T	69320701	2	4	664	1	0	0	0	0	0	0	0	1	10566	874	31	1		1	NOX5	15	69320701	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10	12932656	69320701	33210691	51	40189											
MYH13	8735	broad.mit.edu	37	17	10263502	10263502	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	10263502	C	G	10263502	3	3	664	1	0	0	0	0	1	0	0	0	10039	884	31	4	5451	4	MYH13	17	10263502	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		10263502	70931708	52	40190											
ATP6V0A1	535	mdanderson.org	37	17	40666439	40666439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	40666439	A	G	40666439	3	3	664	1	0	0	0	0	1	0	0	0	1168	304	11	3	2480	3	ATP6V0A1	17	40666439	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	30402937	40666439	40528771	53	40191											
CARD14	79092	broad.mit.edu	37	17	78178060	78178060	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	78178060	T	A	78178060	3	1	664	1	0	0	0	0	1	0	0	0	2648	1435	50	5	2545	5	CARD14	17	78178060	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	37511621	78178060	3017150	54	40192											
ZNF676	163223	mdanderson.org	37	19	22363589	22363589	+	Silent	SNP	C	C	T	rs80146743	byfrequency	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	22363589	C	T	22363589	2	4	664	1	0	0	0	0	0	0	0	1	18095	564	20	2		2	ZNF676	19	22363589	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10		22363589	36765394	55	40193											
FCGBP	8857	broad.mit.edu	37	19	40396331	40396332	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	C	40396332	-	C	40396331	7	5	664	1	0	1	1	0	0	0	0	0	5785	1551	54	0	9239	0	FCGBP	19	40396331	Frame_Shift_Ins	INS	-	TCGA-KL-8326-01A-11D-2310-10	18032742	40396331	18732652	56	40194											
JAG1	182	hgsc.bcm.edu;mdanderson.org	37	20	10626014	10626014	+	Silent	SNP	G	G	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	10626014	G	T	10626014	2	4	664	1	0	0	0	0	0	0	0	1	7941	987	35	4		4	JAG1	20	10626014	Silent	SNP	G	TCGA-KL-8326-01A-11D-2310-10		10626014	52399506	57	40195											
KIAA1755	85449	broad.mit.edu;bcgsc.ca	37	20	36869241	36869241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	36869241	G	T	36869241	3	4	664	1	0	0	0	0	1	0	0	0	8264	1319	46	4	2358	4	KIAA1755	20	36869241	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	26243227	36869241	26156279	58	40196											
SLC35C2	51006	broad.mit.edu	37	20	44984494	44984494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	G	44984494	A	G	44984494	3	3	664	1	0	0	0	0	1	0	0	0	14593	304	11	3	766	3	SLC35C2	20	44984494	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	8115253	44984494	18041026	59	40197											
ELFN2	114794	ucsc.edu	37	22	37769129	37769129	+	Missense_Mutation	SNP	C	C	T	rs61737924	alternate_allele	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	37769129	C	T	37769129	3	4	664	1	0	0	0	0	1	0	0	0	5060	768	27	1	20	1	ELFN2	22	37769129	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		37769129	13535437	60	40198											
TYMP	1890	broad.mit.edu	37	22	50965605	50965605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	50965605	C	T	50965605	3	4	664	1	0	0	0	0	1	0	0	0	16823	739	26	2	714	2	TYMP	22	50965605	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	13196476	50965605	338961	61	40199											
DUSP21	63904	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	44703528	44703528	+	Silent	SNP	C	C	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	44703528	C	T	44703528	2	4	664	1	0	0	0	0	0	0	0	1	4822	581	21	2		2	DUSP21	23	44703528	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10		44703528	110567032	62	40200											
PJA1	64219	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	68382228	68382228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	68382228	T	A	68382228	3	1	664	1	0	0	0	0	1	0	0	0	11968	1696	59	5	1081	5	PJA1	23	68382228	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	23678700	68382228	86888332	63	40201											
PCDH11X	27328	broad.mit.edu	37	X	91090725	91090725	+	Silent	SNP	G	G	T	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	T	91090725	G	T	91090725	2	4	664	1	0	0	0	0	0	0	0	1	11515	1277	45	4		4	PCDH11X	23	91090725	Silent	SNP	G	TCGA-KL-8326-01A-11D-2310-10	22708497	91090725	64179835	64	40202											
CXorf66	347487	hgsc.bcm.edu;mdanderson.org	37	X	139038874	139038874	+	Silent	SNP	G	G	A	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894	A	139038874	G	A	139038874	2	1	664	1	0	0	0	0	0	0	0	1	4120	1335	47	2		2	CXorf66	23	139038874	Silent	SNP	G	TCGA-KL-8326-01A-11D-2310-10	47948149	139038874	16231686	65	40203											
HOOK1	51361	broad.mit.edu	37	1	60314061	60314061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	60314061	A	G	60314061	3	3	665	1	0	0	0	0	1	0	0	0	7289	275	10	3	1046	3	HOOK1	1	60314061	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10		60314061	188936560	1	40204											
FAM189B	10712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	155221684	155221684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	155221684	G	A	155221684	3	1	665	1	0	0	0	0	1	0	0	0	5521	1086	38	1	1400	1	FAM189B	1	155221684	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10	94907623	155221684	94028937	2	40205											
ASTN1	460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	176915167	176915167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	T	176915167	C	T	176915167	3	4	665	1	0	0	0	0	1	0	0	0	1064	797	28	2	1788	2	ASTN1	1	176915167	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	21693483	176915167	72335454	3	40206											
LMOD1	25802	broad.mit.edu	37	1	201868999	201868999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	201868999	A	G	201868999	3	3	665	1	0	0	0	0	1	0	0	0	8863	333	12	3	668	3	LMOD1	1	201868999	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	24953832	201868999	47381622	4	40207											
EXOC8	149371	broad.mit.edu;mdanderson.org	37	1	231471905	231471905	+	Silent	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	231471905	G	A	231471905	2	1	665	1	0	0	0	0	0	0	0	1	5313	1195	42	2		2	EXOC8	1	231471905	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10	29602906	231471905	17778716	5	40208											
SLC3A1	6519	ucsc.edu	37	2	44528268	44528268	+	Splice_Site	SNP	T	T	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	44528268	T	G	44528268	5	3	665	1	0	0	0	0	0	0	1	0	14639	1739	60	5	1160	5	SLC3A1	2	44528268	Splice_Site	SNP	T	TCGA-KL-8327-01A-11D-2310-10		44528268	198671105	6	40209											
POTEF	728378	mdanderson.org	37	2	130833115	130833115	+	Missense_Mutation	SNP	T	T	A	rs2599800		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	130833115	T	A	130833115	3	1	665	1	0	0	0	0	1	0	0	0	12272	1464	51	5	1301	5	POTEF	2	130833115	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	86304847	130833115	112366258	7	40210											
DNAH1	25981	bcgsc.ca	37	3	52387428	52387428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	T	52387428	C	T	52387428	3	4	665	1	0	0	0	0	1	0	0	0	4599	652	23	1	3333	1	DNAH1	3	52387428	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		52387428	145635002	8	40211											
CORIN	10699	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	4	47667069	47667069	+	Silent	SNP	G	G	A	rs61760489		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	47667069	G	A	47667069	2	1	665	1	0	0	0	0	0	0	0	1	3754	1074	38	1		1	CORIN	4	47667069	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		47667069	143487207	9	40212											
DSPP	1834	bcgsc.ca	37	4	88536234	88536239	+	In_Frame_Del	DEL	AGTGAT	AGTGAT	-	rs200486992	alternate_allele	TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	AGTGAT	AGTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	-	88536239	AGTGAT	-	88536234	7	5	665	1	0	1	0	1	0	0	0	0	4784	1029	36	0	2434	0	DSPP	4	88536234	In_Frame_Del	DEL	AGTGAT	TCGA-KL-8327-01A-11D-2310-10	40869165	88536234	102618042	10	40213											
PCDHB10	56126	bcgsc.ca	37	5	140573754	140573754	+	Missense_Mutation	SNP	A	A	C	rs77697313		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	140573754	A	C	140573754	3	2	665	1	0	0	0	0	1	0	0	0	11542	301	11	5	1631	5	PCDHB10	5	140573754	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10		140573754	40341506	11	40214											
CSF1R	1436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	149460495	149460495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	T	149460495	C	T	149460495	3	4	665	1	0	0	0	0	1	0	0	0	3934	536	19	1	2856	1	CSF1R	5	149460495	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	8886741	149460495	31454765	12	40215											
BEND6	221336	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	56846621	56846621	+	Missense_Mutation	SNP	G	G	A	rs199964177		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	56846621	G	A	56846621	3	1	665	1	0	0	0	0	1	0	0	0	1402	1145	40	1	15	1	BEND6	6	56846621	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		56846621	114268446	13	40216											
NT5DC1	221294	broad.mit.edu	37	6	116560197	116560197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	116560197	A	G	116560197	3	3	665	1	0	0	0	0	1	0	0	0	10697	101	4	3	1205	3	NT5DC1	6	116560197	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	59713576	116560197	54554870	14	40217											
TNRC18	84629	mdanderson.org	37	7	5352659	5352659	+	Silent	SNP	G	G	T	rs138591330	by1000genomes	TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	T	5352659	G	T	5352659	2	4	665	1	0	0	0	0	0	0	0	1	16351	987	35	4		4	TNRC18	7	5352659	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		5352659	153786004	15	40218											
FAM86B1	85002	mdanderson.org	37	8	12043930	12043930	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	12043930	G	A	12043930	4	1	665	1	0	0	0	0	0	1	0	0	5651	1357	47	2	331	2	FAM86B1	8	12043930	Nonsense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		12043930	134320092	16	40219											
SNX31	169166	broad.mit.edu	37	8	101661717	101661717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	101661717	A	G	101661717	3	3	665	1	0	0	0	0	1	0	0	0	14914	159	6	3	1352	3	SNX31	8	101661717	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	89617787	101661717	44702305	17	40220											
PPRC1	23082	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	103899427	103899427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	103899427	C	A	103899427	3	1	665	1	0	0	0	0	1	0	0	0	12420	711	25	4	1180	4	PPRC1	10	103899427	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		103899427	31635320	18	40221											
BTBD16	118663	ucsc.edu	37	10	124090744	124090744	+	Missense_Mutation	SNP	G	G	C	rs201203665	alternate_allele	TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	124090744	G	C	124090744	3	2	665	1	0	0	0	0	1	0	0	0	1543	1058	37	4	1099	4	BTBD16	10	124090744	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10	20191317	124090744	11444003	19	40222											
MRPL49	740	broad.mit.edu;bcgsc.ca	37	11	64889873	64889873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	T	64889873	C	T	64889873	3	4	665	1	0	0	0	0	1	0	0	0	9820	759	27	1	57	1	MRPL49	11	64889873	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		64889873	70116643	20	40223											
CACNA1C	775	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	2788865	2788865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	2788865	G	A	2788865	3	1	665	1	0	0	0	0	1	0	0	0	2542	1116	39	1	5896	1	CACNA1C	12	2788865	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		2788865	131063030	21	40224											
GRIN2B	2904	broad.mit.edu;bcgsc.ca	37	12	13906390	13906390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	T	13906390	C	T	13906390	3	4	665	1	0	0	0	0	1	0	0	0	6787	768	27	1	3627	1	GRIN2B	12	13906390	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	11117525	13906390	119945505	22	40225											
CSAD	51380	ucsc.edu	37	12	53565216	53565216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	53565216	A	G	53565216	3	3	665	1	0	0	0	0	1	0	0	0	3927	333	12	3	1060	3	CSAD	12	53565216	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	39658826	53565216	80286679	23	40226											
SMARCC2	6601	broad.mit.edu	37	12	56578007	56578007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	56578007	T	C	56578007	3	2	665	1	0	0	0	0	1	0	0	0	14789	1783	62	3	3319	3	SMARCC2	12	56578007	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	3012791	56578007	77273888	24	40227											
NOC4L	79050	ucsc.edu	37	12	132632437	132632437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	132632437	T	C	132632437	3	2	665	1	0	0	0	0	1	0	0	0	10522	1609	56	3	638	3	NOC4L	12	132632437	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	76054430	132632437	1219458	25	40228											
SLC25A29	123096	ucsc.edu;mdanderson.org	37	14	100758955	100758955	+	Silent	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	100758955	G	A	100758955	2	1	665	1	0	0	0	0	0	0	0	1	14505	962	34	2		2	SLC25A29	14	100758955	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		100758955	6590585	26	40229											
CSPG4	1464	mdanderson.org	37	15	75981944	75981944	+	Missense_Mutation	SNP	C	C	T	rs72732868	byfrequency	TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	T	75981944	C	T	75981944	3	4	665	1	0	0	0	0	1	0	0	0	3962	797	28	2	5538	2	CSPG4	15	75981944	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		75981944	26549448	27	40230											
HYDIN	54768	broad.mit.edu	37	16	70884529	70884529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	70884529	T	C	70884529	3	2	665	1	0	0	0	0	1	0	0	0	7474	1609	56	3	2944	3	HYDIN	16	70884529	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10		70884529	19470224	28	40231											
RCVRN	5957	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	17	9808240	9808240	+	Silent	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	9808240	G	A	9808240	2	1	665	1	0	0	0	0	0	0	0	1	13199	1140	40	1		1	RCVRN	17	9808240	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		9808240	71386970	29	40232											
ELAC2	60528	bcgsc.ca	37	17	12908367	12908367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	T	12908367	C	T	12908367	3	4	665	1	0	0	0	0	1	0	0	0	5049	507	18	2	1614	2	ELAC2	17	12908367	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	3100127	12908367	68286843	30	40233											
SLC5A10	125206	hgsc.bcm.edu	37	17	18923480	18923480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	18923480	A	G	18923480	3	3	665	1	0	0	0	0	1	0	0	0	14675	391	14	3	1741	3	SLC5A10	17	18923480	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	6015113	18923480	62271730	31	40234											
CDK12	51755	broad.mit.edu	37	17	37657501	37657501	+	Splice_Site	SNP	A	A	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	37657501	A	G	37657501	5	3	665	1	0	0	0	0	0	0	1	0	3130	434	15	3	2440	3	CDK12	17	37657501	Splice_Site	SNP	A	TCGA-KL-8327-01A-11D-2310-10	18734021	37657501	43537709	32	40235											
CDH2	1000	broad.mit.edu;mdanderson.org	37	18	25543442	25543442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	25543442	G	A	25543442	3	1	665	1	0	0	0	0	1	0	0	0	3107	1000	35	2	335	2	CDH2	18	25543442	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		25543442	52533806	33	40236											
TCF4	6925	ucsc.edu;mdanderson.org;bcgsc.ca	37	18	52937134	52937134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	52937134	G	A	52937134	3	1	665	1	0	0	0	0	1	0	0	0	15707	1348	47	2	1201	2	TCF4	18	52937134	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10	27393692	52937134	25140114	34	40237											
ALPK2	115701	hgsc.bcm.edu	37	18	56202992	56202992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	56202992	T	C	56202992	3	2	665	1	0	0	0	0	1	0	0	0	545	1609	56	3	2121	3	ALPK2	18	56202992	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	3265858	56202992	21874256	35	40238											
ZNF439	90594	hgsc.bcm.edu	37	19	11979212	11979212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	11979212	G	A	11979212	3	1	665	1	0	0	0	0	1	0	0	0	17923	1377	48	2	1338	2	ZNF439	19	11979212	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		11979212	47149771	36	40239											
CACNA1A	773	bcgsc.ca	37	19	13366015	13366015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	13366015	T	C	13366015	3	2	665	1	0	0	0	0	1	0	0	0	2540	1725	60	3	3049	3	CACNA1A	19	13366015	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	1386803	13366015	45762968	37	40240											
ZNF14	7561	bcgsc.ca	37	19	19822268	19822268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	19822268	A	G	19822268	3	3	665	1	0	0	0	0	1	0	0	0	17740	275	10	3	110	3	ZNF14	19	19822268	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	6456253	19822268	39306715	38	40241											
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	34710315	T	G	34710315	2	3	665	1	0	0	0	0	0	0	0	1	9061	1538	54	5		5	LSM14A	19	34710315	Silent	SNP	T	TCGA-KL-8327-01A-11D-2310-10	14888047	34710315	24418668	39	40242											
SIPA1L3	23094	broad.mit.edu	37	19	38655328	38655329	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	38655329	-	C	38655328	7	5	665	1	0	1	1	0	0	0	0	0	14344	1190	42	0	4040	0	SIPA1L3	19	38655328	Frame_Shift_Ins	INS	-	TCGA-KL-8327-01A-11D-2310-10	3945013	38655328	20473655	40	40243											
DBP	1628	hgsc.bcm.edu	37	19	49134133	49134155	+	Frame_Shift_Del	DEL	GGCGCGGTAGTGGGACAGCTCCT	GGCGCGGTAGTGGGACAGCTCCT	-	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	GGCGCGGTAGTGGGACAGCTCCT	GGCGCGGTAGTGGGACAGCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	-	49134155	GGCGCGGTAGTGGGACAGCTCCT	-	49134133	7	5	665	1	0	1	0	1	0	0	0	0	4258	1103	39	0	42	0	DBP	19	49134133	Frame_Shift_Del	DEL	GGCGCGGTAGTGGGACAGCTCCT	TCGA-KL-8327-01A-11D-2310-10	10478805	49134133	9994850	41	40244	513	2									
DBP	1628	bcgsc.ca	37	19	49134134	49134156	+	Frame_Shift_Del	DEL	GGCGCGGTAGTGGGACAGCTCCT	GGCGCGGTAGTGGGACAGCTCCT	-	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	GGCGCGGTAGTGGGACAGCTCCT	GGCGCGGTAGTGGGACAGCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	-	49134156	GGCGCGGTAGTGGGACAGCTCCT	-	49134134	7	5	665	1	0	1	0	1	0	0	0	0	4258	1203	42	0	43	0	DBP	19	49134134	Frame_Shift_Del	DEL	GGCGCGGTAGTGGGACAGCTCCT	TCGA-KL-8327-01A-11D-2310-10	1	49134134	9994849	42	40245	513	2									
SHANK1	50944	hgsc.bcm.edu;mdanderson.org	37	19	51169881	51169881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	51169881	G	A	51169881	3	1	665	1	0	0	0	0	1	0	0	0	14277	1000	35	2	1157	2	SHANK1	19	51169881	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10	2035747	51169881	7959102	43	40246											
HSPA12B	116835	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	3730674	3730674	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	G	3730674	C	G	3730674	3	3	665	1	0	0	0	0	1	0	0	0	7412	903	32	4	1139	4	HSPA12B	20	3730674	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		3730674	59294846	44	40247											
MAP1LC3A	84557	broad.mit.edu	37	20	33147658	33147658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	33147658	T	C	33147658	3	2	665	1	0	0	0	0	1	0	0	0	9237	1609	56	3	392	3	MAP1LC3A	20	33147658	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	29416984	33147658	29877862	45	40248											
ASCC2	84164	mdanderson.org	37	22	30197985	30197985	+	Silent	SNP	G	G	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	30197985	G	A	30197985	2	1	665	1	0	0	0	0	0	0	0	1	1032	1368	48	2		2	ASCC2	22	30197985	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		30197985	21106581	46	40249											
NHS	4810	broad.mit.edu	37	X	17745123	17745123	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	A	17745123	C	A	17745123	4	1	665	1	0	0	0	0	0	1	0	0	10418	838	29	4	2961	4	NHS	23	17745123	Nonsense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		17745123	137525437	47	40250											
APOO	79135	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	23874422	23874422	+	Silent	SNP	T	T	C	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	C	23874422	T	C	23874422	2	2	665	1	0	0	0	0	0	0	0	1	813	1838	64	3		3	APOO	23	23874422	Silent	SNP	T	TCGA-KL-8327-01A-11D-2310-10	6129299	23874422	131396138	48	40251											
RBMX	27316	mdanderson.org	37	X	135957699	135957699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019	T	135957699	C	T	135957699	3	4	665	1	0	0	0	0	1	0	0	0	13164	681	24	2	659	2	RBMX	23	135957699	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	112083277	135957699	19312861	49	40252											
ZBTB17	7709	broad.mit.edu	37	1	16268583	16268583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	16268583	C	T	16268583	3	4	666	1	0	0	0	0	1	0	0	0	17539	710	25	2	122	2	ZBTB17	1	16268583	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10		16268583	232982038	1	40253											
PEF1	553115	broad.mit.edu	37	1	32101118	32101118	+	Silent	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	32101118	G	A	32101118	2	1	666	1	0	0	0	0	0	0	0	1	11725	1195	42	2		2	PEF1	1	32101118	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	15832535	32101118	217149503	2	40254											
TAL1	6886	hgsc.bcm.edu	37	1	47685487	47685487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	47685487	G	T	47685487	3	4	666	1	0	0	0	0	1	0	0	0	15553	1232	43	4	98	4	TAL1	1	47685487	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	15584369	47685487	201565134	3	40255											
NFIA	4774	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	61869880	61869880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	61869880	G	A	61869880	3	1	666	1	0	0	0	0	1	0	0	0	10377	1175	41	2	1356	2	NFIA	1	61869880	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	14184393	61869880	187380741	4	40256											
NBPF10	100132406	mdanderson.org	37	1	145304613	145304613	+	Missense_Mutation	SNP	T	T	C	rs113902225		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	145304613	T	C	145304613	3	2	666	1	0	0	0	0	1	0	0	0	10200	1551	54	3	1584	3	NBPF10	1	145304613	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	83434733	145304613	103946008	5	40257											
IQGAP3	128239	ucsc.edu;bcgsc.ca	37	1	156531643	156531643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	156531643	T	C	156531643	3	2	666	1	0	0	0	0	1	0	0	0	7823	1551	54	3	3983	3	IQGAP3	1	156531643	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	11227030	156531643	92718978	6	40258											
RASAL2	9462	bcgsc.ca	37	1	178426034	178426034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	178426034	G	T	178426034	3	4	666	1	0	0	0	0	1	0	0	0	13077	1014	35	4	2478	4	RASAL2	1	178426034	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	21894391	178426034	70824587	7	40259											
RBBP5	5929	bcgsc.ca	37	1	205070729	205070729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	205070729	T	C	205070729	3	2	666	1	0	0	0	0	1	0	0	0	13115	1565	54	3	1021	3	RBBP5	1	205070729	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	26644695	205070729	44179892	8	40260											
C2orf43	60526	bcgsc.ca	37	2	20886772	20886772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	20886772	T	C	20886772	3	2	666	1	0	0	0	0	1	0	0	0	2169	1667	58	3	112	3	C2orf43	2	20886772	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10		20886772	222312601	9	40261											
MSH6	2956	mdanderson.org	37	2	48010558	48010558	+	Silent	SNP	C	C	A	rs1042820	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	48010558	C	A	48010558	2	1	666	1	0	0	0	0	0	0	0	1	9881	784	28	4		4	MSH6	2	48010558	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	27123786	48010558	195188815	10	40262											
EXOC6B	23233	ucsc.edu;bcgsc.ca	37	2	72725650	72725650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	72725650	C	T	72725650	3	4	666	1	0	0	0	0	1	0	0	0	5311	826	29	2	1205	2	EXOC6B	2	72725650	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	24715092	72725650	170473723	11	40263											
IL1RL1	9173	ucsc.edu	37	2	102964403	102964403	+	Splice_Site	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	102964403	A	G	102964403	5	3	666	1	0	0	0	0	0	0	1	0	7670	434	15	3	1016	3	IL1RL1	2	102964403	Splice_Site	SNP	A	TCGA-KL-8328-01A-11D-2310-10	30238753	102964403	140234970	12	40264											
MBD5	55777	broad.mit.edu;mdanderson.org	37	2	149226187	149226187	+	Silent	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	149226187	G	A	149226187	2	1	666	1	0	0	0	0	0	0	0	1	9354	1132	40	1		1	MBD5	2	149226187	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	46261784	149226187	93973186	13	40265											
XIRP2	129446	broad.mit.edu	37	2	168100984	168100984	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	168100984	C	T	168100984	4	4	666	1	0	0	0	0	0	1	0	0	17442	595	21	2	3112	2	XIRP2	2	168100984	Nonsense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	18874797	168100984	75098389	14	40266											
LRP2	4036	hgsc.bcm.edu;ucsc.edu	37	2	170129474	170129474	+	Silent	SNP	G	G	A	rs145709922	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	170129474	G	A	170129474	2	1	666	1	0	0	0	0	0	0	0	1	8963	1049	37	1		1	LRP2	2	170129474	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	2028490	170129474	73069899	15	40267											
ABCA12	26154	ucsc.edu	37	2	215797365	215797365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	215797365	T	C	215797365	3	2	666	1	0	0	0	0	1	0	0	0	30	1551	54	3	10	3	ABCA12	2	215797365	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	45667891	215797365	27402008	16	40268											
KAT2B	8850	mdanderson.org	37	3	20169035	20169035	+	Silent	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	20169035	A	G	20169035	2	3	666	1	0	0	0	0	0	0	0	1	7989	69	3	3		3	KAT2B	3	20169035	Silent	SNP	A	TCGA-KL-8328-01A-11D-2310-10		20169035	177853395	17	40269											
CCDC66	285331	broad.mit.edu;mdanderson.org	37	3	56649272	56649272	+	Silent	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	56649272	C	T	56649272	2	4	666	1	0	0	0	0	0	0	0	1	2840	477	17	2		2	CCDC66	3	56649272	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	36480237	56649272	141373158	18	40270											
ROBO2	6092	broad.mit.edu;mdanderson.org	37	3	77571941	77571941	+	Silent	SNP	C	C	T	rs201344460		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	77571941	C	T	77571941	2	4	666	1	0	0	0	0	0	0	0	1	13527	535	19	1		1	ROBO2	3	77571941	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	20922669	77571941	120450489	19	40271											
CRYBG3	131544	broad.mit.edu	37	3	97596465	97596468	+	Frame_Shift_Del	DEL	AGAG	AGAG	-	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	AGAG	AGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	-	97596468	AGAG	-	97596465	7	5	666	1	0	1	0	1	0	0	0	0	3915	180	7	0	585	0	CRYBG3	3	97596465	Frame_Shift_Del	DEL	AGAG	TCGA-KL-8328-01A-11D-2310-10	20024524	97596465	100425965	20	40272											
TM4SF4	7104	broad.mit.edu	37	3	149192812	149192812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	149192812	G	A	149192812	3	1	666	1	0	0	0	0	1	0	0	0	15982	1117	39	1	150	1	TM4SF4	3	149192812	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	51596347	149192812	48829618	21	40273											
MUC4	4585	mdanderson.org	37	3	195512674	195512674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	195512674	A	G	195512674	3	3	666	1	0	0	0	0	1	0	0	0	9985	72	3	3		3	MUC4	3	195512674	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	46319862	195512674	2509756	22	40274											
TACC3	10460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	1729580	1729580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	1729580	G	T	1729580	3	4	666	1	0	0	0	0	1	0	0	0	15515	1290	45	4	461	4	TACC3	4	1729580	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10		1729580	189424696	23	40275											
PKD2	5311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	88986631	88986631	+	Nonsense_Mutation	SNP	C	C	T	rs121918040		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	88986631	C	T	88986631	4	4	666	1	0	0	0	0	0	1	0	0	11973	876	31	1	2266	1	PKD2	4	88986631	Nonsense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	87257051	88986631	102167645	24	40276											
GRID2	2895	hgsc.bcm.edu;mdanderson.org	37	4	94411803	94411803	+	Silent	SNP	G	G	A	rs188016557	by1000genomes	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	94411803	G	A	94411803	2	1	666	1	0	0	0	0	0	0	0	1	6779	1132	40	1		1	GRID2	4	94411803	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	5425172	94411803	96742473	25	40277											
FRG1	2483	mdanderson.org	37	4	190878552	190878552	+	Splice_Site	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	190878552	G	A	190878552	5	1	666	1	0	0	0	0	0	0	1	0	6053	1014	35	2	454	2	FRG1	4	190878552	Splice_Site	SNP	G	TCGA-KL-8328-01A-11D-2310-10	96466749	190878552	275724	26	40278											
PROP1	5626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	177421251	177421251	+	Silent	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	177421251	C	T	177421251	2	4	666	1	0	0	0	0	0	0	0	1	12567	755	27	1		1	PROP1	5	177421251	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10		177421251	3494009	27	40279											
ZNF354C	30832	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	178506374	178506374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	178506374	C	A	178506374	3	1	666	1	0	0	0	0	1	0	0	0	17878	507	18	4	955	4	ZNF354C	5	178506374	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	1085123	178506374	2408886	28	40280											
HLA-C	3107	mdanderson.org	37	6	31238929	31238929	+	Silent	SNP	C	C	G	rs71552047	alternate_allele	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	31238929	C	G	31238929	2	3	666	1	0	0	0	0	0	0	0	1	7204	813	29	4		4	HLA-C	6	31238929	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10		31238929	139876138	29	40281	514	2									
HLA-C	3107	mdanderson.org	37	6	31238931	31238931	+	Missense_Mutation	SNP	G	G	C	rs697743	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	31238931	G	C	31238931	3	2	666	1	0	0	0	0	1	0	0	0	7204	962	34	4	586	4	HLA-C	6	31238931	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	2	31238931	139876136	30	40282	514	2									
DNAH8	1769	ucsc.edu	37	6	38690885	38690885	+	Silent	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	38690885	G	A	38690885	2	1	666	1	0	0	0	0	0	0	0	1	4609	1334	46	2		2	DNAH8	6	38690885	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	7451954	38690885	132424182	31	40283											
BCLAF1	9774	broad.mit.edu;mdanderson.org;bcgsc.ca	37	6	136599231	136599231	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	136599231	T	A	136599231	3	1	666	1	0	0	0	0	1	0	0	0	1383	1464	51	5	2014	5	BCLAF1	6	136599231	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	97908346	136599231	34515836	32	40284											
AKAP12	9590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	151673069	151673069	+	Silent	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	151673069	C	T	151673069	2	4	666	1	0	0	0	0	0	0	0	1	448	535	19	1		1	AKAP12	6	151673069	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	15073838	151673069	19441998	33	40285											
FNDC1	84624	hgsc.bcm.edu;bcgsc.ca	37	6	159660825	159660825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	159660825	G	A	159660825	3	1	666	1	0	0	0	0	1	0	0	0	5975	1145	40	1	4511	1	FNDC1	6	159660825	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	7987756	159660825	11454242	34	40286											
MLXIPL	51085	hgsc.bcm.edu;ucsc.edu	37	7	73020310	73020310	+	Silent	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	73020310	G	A	73020310	2	1	666	1	0	0	0	0	0	0	0	1	9644	1103	39	1		1	MLXIPL	7	73020310	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10		73020310	86118353	35	40287											
NPTX2	4885	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	98254299	98254299	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	98254299	T	G	98254299	3	3	666	1	0	0	0	0	1	0	0	0	10610	1406	49	5	719	5	NPTX2	7	98254299	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	25233989	98254299	60884364	36	40288											
CNTNAP2	26047	hgsc.bcm.edu;ucsc.edu	37	7	146829390	146829390	+	Silent	SNP	C	C	T	rs78543192	bycluster;byfrequency;by1000genomes	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	146829390	C	T	146829390	2	4	666	1	0	0	0	0	0	0	0	1	3649	535	19	1		1	CNTNAP2	7	146829390	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	48575091	146829390	12309273	37	40289											
CHPF2	54480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	150932432	150932432	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	150932432	C	T	150932432	4	4	666	1	0	0	0	0	0	1	0	0	3371	711	25	2	568	2	CHPF2	7	150932432	Nonsense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	4103042	150932432	8206231	38	40290											
MTBP	27085	ucsc.edu;bcgsc.ca	37	8	121467780	121467780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	121467780	A	G	121467780	3	3	666	1	0	0	0	0	1	0	0	0	9919	449	16	3	612	3	MTBP	8	121467780	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		121467780	24896242	39	40291											
SMARCA2	6595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	2056812	2056812	+	Silent	SNP	T	T	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	2056812	T	A	2056812	2	1	666	1	0	0	0	0	0	0	0	1	14782	1800	63	5		5	SMARCA2	9	2056812	Silent	SNP	T	TCGA-KL-8328-01A-11D-2310-10		2056812	139156619	40	40292											
OR13C2	392376	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	107367649	107367649	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	107367649	G	C	107367649	4	2	666	1	0	0	0	0	0	1	0	0	10941	1294	45	4	699	4	OR13C2	9	107367649	Nonsense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	105310837	107367649	33845782	41	40293											
MUSK	4593	broad.mit.edu;mdanderson.org	37	9	113563201	113563201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	113563201	G	A	113563201	3	1	666	1	0	0	0	0	1	0	0	0	9996	1029	36	2	2633	2	MUSK	9	113563201	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	6195552	113563201	27650230	42	40294											
PI4K2A	55361	broad.mit.edu	37	10	99400542	99400542	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	-	99400542	C	-	99400542	7	5	666	1	0	1	0	1	0	0	0	0	11878	507	18	0	45	0	PI4K2A	10	99400542	Frame_Shift_Del	DEL	C	TCGA-KL-8328-01A-11D-2310-10		99400542	36134205	43	40295											
C10orf120	399814	hgsc.bcm.edu;bcgsc.ca	37	10	124457697	124457697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	124457697	T	G	124457697	3	3	666	1	0	0	0	0	1	0	0	0	1592	1783	62	5	451	5	C10orf120	10	124457697	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	25057155	124457697	11077050	44	40296	515	2									
C10orf120	399814	broad.mit.edu;bcgsc.ca	37	10	124457698	124457698	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	124457698	C	A	124457698	4	1	666	1	0	0	0	0	0	1	0	0	1592	835	29	4	452	4	C10orf120	10	124457698	Nonsense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	1	124457698	11077049	45	40297	515	2									
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	11	46515749	46515749	+	Missense_Mutation	SNP	T	T	C	rs147544015		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	46515749	T	C	46515749	3	2	666	1	0	0	0	0	1	0	0	0	565	1493	52	3	1587	3	AMBRA1	11	46515749	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10		46515749	88490767	46	40298											
RPS6KA4	8986	mdanderson.org	37	11	64127744	64127744	+	Silent	SNP	A	A	G	rs521950	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	64127744	A	G	64127744	2	3	666	1	0	0	0	0	0	0	0	1	13666	69	3	3		3	RPS6KA4	11	64127744	Silent	SNP	A	TCGA-KL-8328-01A-11D-2310-10	17611995	64127744	70878772	47	40299											
RAB1B	81876	ucsc.edu	37	11	66043329	66043329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	66043329	G	A	66043329	3	1	666	1	0	0	0	0	1	0	0	0	12919	1059	37	1	352	1	RAB1B	11	66043329	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	1915585	66043329	68963187	48	40300											
DSCAML1	57453	broad.mit.edu	37	11	117392079	117392079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	117392079	C	T	117392079	3	4	666	1	0	0	0	0	1	0	0	0	4771	652	23	1	5294	1	DSCAML1	11	117392079	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	51348750	117392079	17614437	49	40301											
CHD4	1108	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	6701640	6701640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	6701640	C	A	6701640	3	1	666	1	0	0	0	0	1	0	0	0	3329	652	23	4	2959	4	CHD4	12	6701640	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10		6701640	127150255	50	40302											
DUSP16	80824	broad.mit.edu	37	12	12630273	12630273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	12630273	A	G	12630273	3	3	666	1	0	0	0	0	1	0	0	0	4818	275	10	3	509	3	DUSP16	12	12630273	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	5928633	12630273	121221622	51	40303											
ANO6	196527	mdanderson.org	37	12	45725162	45725162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	45725162	A	G	45725162	3	3	666	1	0	0	0	0	1	0	0	0	701	72	3	3	265	3	ANO6	12	45725162	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	33094889	45725162	88126733	52	40304											
GALNT6	11226	broad.mit.edu	37	12	51752937	51752937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	51752937	C	G	51752937	3	3	666	1	0	0	0	0	1	0	0	0	6224	680	24	4	541	4	GALNT6	12	51752937	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	6027775	51752937	82098958	53	40305											
E2F7	144455	broad.mit.edu	37	12	77419489	77419490	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	-	77419490	TT	-	77419489	7	5	666	1	0	1	0	1	0	0	0	0	4874	1609	56	0	329	0	E2F7	12	77419489	Frame_Shift_Del	DEL	TT	TCGA-KL-8328-01A-11D-2310-10	25666552	77419489	56432406	54	40306											
IKBIP	121457	mdanderson.org	37	12	99020139	99020139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	99020139	T	C	99020139	3	2	666	1	0	0	0	0	1	0	0	0	7616	1638	57	3	1194	3	IKBIP	12	99020139	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	21600650	99020139	34831756	55	40307											
FREM2	341640	broad.mit.edu	37	13	39446906	39446906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	39446906	A	G	39446906	3	3	666	1	0	0	0	0	1	0	0	0	6052	275	10	3	8077	3	FREM2	13	39446906	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		39446906	75722972	56	40308											
POTEG	404785	mdanderson.org	37	14	19553653	19553653	+	Silent	SNP	C	C	T	rs201360940		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	19553653	C	T	19553653	2	4	666	1	0	0	0	0	0	0	0	1	12273	535	19	1		1	POTEG	14	19553653	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10		19553653	87795887	57	40309											
PNP	4860	broad.mit.edu;bcgsc.ca	37	14	20944680	20944680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	20944680	G	A	20944680	3	1	666	1	0	0	0	0	1	0	0	0	12170	1348	47	2	812	2	PNP	14	20944680	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	1391027	20944680	86404860	58	40310											
ISM2	145501	mdanderson.org	37	14	77942316	77942316	+	Silent	SNP	G	G	A	rs3742732	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	77942316	G	A	77942316	2	1	666	1	0	0	0	0	0	0	0	1	7868	1136	40	1		1	ISM2	14	77942316	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	56997636	77942316	29407224	59	40311											
SPATA7	55812	bcgsc.ca	37	14	88892586	88892586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	88892586	A	G	88892586	3	3	666	1	0	0	0	0	1	0	0	0	15026	246	9	3	405	3	SPATA7	14	88892586	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	10950270	88892586	18456954	60	40312											
C14orf142	84520	broad.mit.edu;mdanderson.org	37	14	93670052	93670052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	93670052	C	T	93670052	3	4	666	1	0	0	0	0	1	0	0	0	1749	652	23	1	22	1	C14orf142	14	93670052	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	4777466	93670052	13679488	61	40313											
AHNAK2	113146	mdanderson.org	37	14	105418155	105418155	+	Silent	SNP	G	G	C	rs141600524	by1000genomes	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	105418155	G	C	105418155	2	2	666	1	0	0	0	0	0	0	0	1	415	1277	45	4		4	AHNAK2	14	105418155	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	11748103	105418155	1931385	62	40314											
MYO1E	4643	mdanderson.org	37	15	59466112	59466112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	59466112	A	G	59466112	3	3	666	1	0	0	0	0	1	0	0	0	10079	304	11	3	1191	3	MYO1E	15	59466112	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		59466112	43065280	63	40315											
USP3	9960	broad.mit.edu;mdanderson.org	37	15	63866525	63866525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	63866525	T	C	63866525	3	2	666	1	0	0	0	0	1	0	0	0	17072	1609	56	3	1061	3	USP3	15	63866525	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	4400413	63866525	38664867	64	40316											
ANP32A	8125	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	15	69079816	69079816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	A	69079816	G	A	69079816	3	1	666	1	0	0	0	0	1	0	0	0	705	1116	39	1	506	1	ANP32A	15	69079816	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	5213291	69079816	33451576	65	40317											
KIAA1199	57214	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	15	81216982	81216982	+	Silent	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	81216982	C	T	81216982	2	4	666	1	0	0	0	0	0	0	0	1	8220	535	19	1		1	KIAA1199	15	81216982	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	12137166	81216982	21314410	66	40318											
MEF2A	4205	hgsc.bcm.edu	37	15	100250958	100250958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	100250958	T	C	100250958	3	2	666	1	0	0	0	0	1	0	0	0	9462	1551	54	3	1305	3	MEF2A	15	100250958	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	19033976	100250958	2280434	67	40319											
LRRK1	79705	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	101606197	101606197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	101606197	C	T	101606197	3	4	666	1	0	0	0	0	1	0	0	0	9039	797	28	2	5677	2	LRRK1	15	101606197	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	1355239	101606197	925195	68	40320											
NPRL3	8131	bcgsc.ca	37	16	169144	169144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	169144	A	G	169144	3	3	666	1	0	0	0	0	1	0	0	0	10605	420	15	3	1453	3	NPRL3	16	169144	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		169144	90185609	69	40321											
CACNA1H	8912	mdanderson.org	37	16	1250389	1250389	+	Missense_Mutation	SNP	A	A	G	rs36117280	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	1250389	A	G	1250389	3	3	666	1	0	0	0	0	1	0	0	0	2547	217	8	3	959	3	CACNA1H	16	1250389	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	1081245	1250389	89104364	70	40322											
C16orf3	750	hgsc.bcm.edu	37	16	90095603	90095604	+	In_Frame_Ins	INS	-	-	GGCTGCGGGGCA	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	GGCTGCGGGGCA	90095604	-	GGCTGCGGGGCA	90095603	7	5	666	1	0	1	1	0	0	0	0	0	1814	188	7	0	209	0	C16orf3	16	90095603	In_Frame_Ins	INS	-	TCGA-KL-8328-01A-11D-2310-10	88845214	90095603	259150	71	40323											
OR1A2	26189	bcgsc.ca	37	17	3101590	3101590	+	Missense_Mutation	SNP	C	C	T	rs2469791	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	3101590	C	T	3101590	3	4	666	1	0	0	0	0	1	0	0	0	10957	652	23	1	780	1	OR1A2	17	3101590	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10		3101590	78093620	72	40324											
SDK2	54549	ucsc.edu	37	17	71468293	71468293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	71468293	T	C	71468293	3	2	666	1	0	0	0	0	1	0	0	0	13982	1493	52	3	6401	3	SDK2	17	71468293	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	68366703	71468293	9726917	73	40325											
CNDP1	84735	broad.mit.edu;mdanderson.org	37	18	72234590	72234590	+	Silent	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	72234590	T	C	72234590	2	2	666	1	0	0	0	0	0	0	0	1	3595	1829	64	3		3	CNDP1	18	72234590	Silent	SNP	T	TCGA-KL-8328-01A-11D-2310-10		72234590	5842658	74	40326											
RFX2	5990	broad.mit.edu;mdanderson.org	37	19	6004252	6004252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	6004252	T	C	6004252	3	2	666	1	0	0	0	0	1	0	0	0	13276	1493	52	3	735	3	RFX2	19	6004252	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10		6004252	53124731	75	40327											
ZNF763	284390	mdanderson.org	37	19	12087921	12087921	+	Silent	SNP	G	G	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	12087921	G	C	12087921	2	2	666	1	0	0	0	0	0	0	0	1	18149	1074	38	4		4	ZNF763	19	12087921	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	6083669	12087921	47041062	76	40328											
LSM14A	26065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	34712450	34712450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	34712450	A	G	34712450	3	3	666	1	0	0	0	0	1	0	0	0	9061	101	4	3	1209	3	LSM14A	19	34712450	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	22624529	34712450	24416533	77	40329											
IRGC	56269	mdanderson.org	37	19	44223180	44223180	+	Missense_Mutation	SNP	T	T	C	rs142490244		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	44223180	T	C	44223180	3	2	666	1	0	0	0	0	1	0	0	0	7845	1580	55	3	472	3	IRGC	19	44223180	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	9510730	44223180	14905803	78	40330											
ZNF235	9310	mdanderson.org	37	19	44791618	44791618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	44791618	C	T	44791618	3	4	666	1	0	0	0	0	1	0	0	0	17800	478	17	2	250	2	ZNF235	19	44791618	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	568438	44791618	14337365	79	40331											
KLC3	147700	mdanderson.org	37	19	45849909	45849909	+	Silent	SNP	A	A	G	rs9749618	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	45849909	A	G	45849909	2	3	666	1	0	0	0	0	0	0	0	1	8342	40	2	3		3	KLC3	19	45849909	Silent	SNP	A	TCGA-KL-8328-01A-11D-2310-10	1058291	45849909	13279074	80	40332											
PPP5C	5536	mdanderson.org	37	19	46878881	46878881	+	Silent	SNP	T	T	C	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	C	46878881	T	C	46878881	2	2	666	1	0	0	0	0	0	0	0	1	12416	1461	51	3		3	PPP5C	19	46878881	Silent	SNP	T	TCGA-KL-8328-01A-11D-2310-10	1028972	46878881	12250102	81	40333											
LILRA2	11027	mdanderson.org	37	19	55086955	55086955	+	Silent	SNP	C	C	T	rs145792151	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	T	55086955	C	T	55086955	2	4	666	1	0	0	0	0	0	0	0	1	8792	489	17	2		2	LILRA2	19	55086955	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	8208074	55086955	4042028	82	40334											
RFPL3	10738	mdanderson.org	37	22	32756407	32756407	+	Missense_Mutation	SNP	A	A	G	rs61747109	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	32756407	A	G	32756407	3	3	666	1	0	0	0	0	1	0	0	0	13268	391	14	3	548	3	RFPL3	22	32756407	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		32756407	18548159	83	40335											
TMEM27	57393	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	15657840	15657840	+	Silent	SNP	A	A	G	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335	G	15657840	A	G	15657840	2	3	666	1	0	0	0	0	0	0	0	1	16164	214	8	3		3	TMEM27	23	15657840	Silent	SNP	A	TCGA-KL-8328-01A-11D-2310-10		15657840	139612720	84	40336											
KIF1B	23095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	10364647	10364647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	10364647	G	T	10364647	3	4	667	1	0	0	0	0	1	0	0	0	8291	1116	39	4	3482	4	KIF1B	1	10364647	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		10364647	238885974	1	40337											
NBPF3	84224	mdanderson.org	37	1	21806667	21806667	+	Silent	SNP	C	C	G	rs12043777	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	21806667	C	G	21806667	2	3	667	1	0	0	0	0	0	0	0	1	10204	564	20	4		4	NBPF3	1	21806667	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	11442020	21806667	227443954	2	40338											
KIAA1614	57710	ucsc.edu	37	1	180905800	180905800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	180905800	A	G	180905800	3	3	667	1	0	0	0	0	1	0	0	0	8255	180	7	3	2773	3	KIAA1614	1	180905800	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	159099133	180905800	68344821	3	40339											
LPIN1	23175	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	11955246	11955246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	11955246	G	A	11955246	3	1	667	1	0	0	0	0	1	0	0	0	8925	1145	40	1	2236	1	LPIN1	2	11955246	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		11955246	231244127	4	40340											
RBMS3	27303	broad.mit.edu	37	3	29925685	29925685	+	Silent	SNP	T	T	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	29925685	T	G	29925685	2	3	667	1	0	0	0	0	0	0	0	1	13163	1567	55	5		5	RBMS3	3	29925685	Silent	SNP	T	TCGA-KL-8329-01A-11D-2310-10		29925685	168096745	5	40341											
OR5H15	403274	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	97888186	97888186	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	97888186	C	G	97888186	3	3	667	1	0	0	0	0	1	0	0	0	11168	913	32	4	645	4	OR5H15	3	97888186	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	67962501	97888186	100134244	6	40342											
A4GNT	51146	mdanderson.org	37	3	137850003	137850003	+	Silent	SNP	A	A	G	rs2724691	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	137850003	A	G	137850003	2	3	667	1	0	0	0	0	0	0	0	1	7	41	2	3		3	A4GNT	3	137850003	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	39961817	137850003	60172427	7	40343											
PRR23A	729627	hgsc.bcm.edu;mdanderson.org	37	3	138724463	138724463	+	Silent	SNP	G	G	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	138724463	G	A	138724463	2	1	667	1	0	0	0	0	0	0	0	1	12604	1049	37	1		1	PRR23A	3	138724463	Silent	SNP	G	TCGA-KL-8329-01A-11D-2310-10	874460	138724463	59297967	8	40344											
MUC4	4585	mdanderson.org	37	3	195506530	195506530	+	Missense_Mutation	SNP	C	C	G	rs201186756		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	195506530	C	G	195506530	3	3	667	1	0	0	0	0	1	0	0	0	9985	536	19	4		4	MUC4	3	195506530	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	56782067	195506530	2515900	9	40345											
MUC4	4585	mdanderson.org	37	3	195510900	195510900	+	Missense_Mutation	SNP	G	G	T	rs201192572	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	195510900	G	T	195510900	3	4	667	1	0	0	0	0	1	0	0	0	9985	1368	48	4		4	MUC4	3	195510900	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	4370	195510900	2511530	10	40346											
PAK2	5062	mdanderson.org	37	3	196529978	196529978	+	Silent	SNP	C	C	T	rs79726945		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	196529978	C	T	196529978	2	4	667	1	0	0	0	0	0	0	0	1	11408	680	24	2		2	PAK2	3	196529978	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	1019078	196529978	1492452	11	40347											
NOP14	8602	broad.mit.edu	37	4	2952919	2952919	+	Silent	SNP	T	T	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	2952919	T	C	2952919	2	2	667	1	0	0	0	0	0	0	0	1	10543	1722	60	3		3	NOP14	4	2952919	Silent	SNP	T	TCGA-KL-8329-01A-11D-2310-10		2952919	188201357	12	40348											
UGT2B28	54490	broad.mit.edu	37	4	70146674	70146674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	-	70146674	T	-	70146674	7	5	667	1	0	1	0	1	0	0	0	0	16972	1596	56	0	458	0	UGT2B28	4	70146674	Frame_Shift_Del	DEL	T	TCGA-KL-8329-01A-11D-2310-10	67193755	70146674	121007602	13	40349											
CNOT6L	246175	mdanderson.org	37	4	78650048	78650048	+	Silent	SNP	C	C	T	rs199946358		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	78650048	C	T	78650048	2	4	667	1	0	0	0	0	0	0	0	1	3625	755	27	1		1	CNOT6L	4	78650048	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	8503374	78650048	112504228	14	40350											
HERC5	51191	mdanderson.org	37	4	89380519	89380519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	89380519	A	G	89380519	3	3	667	1	0	0	0	0	1	0	0	0	7068	43	2	3	293	3	HERC5	4	89380519	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	10730471	89380519	101773757	15	40351											
DCHS2	54798	broad.mit.edu;ucsc.edu	37	4	155219313	155219313	+	Silent	SNP	C	C	T	rs142512414		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	155219313	C	T	155219313	2	4	667	1	0	0	0	0	0	0	0	1	4290	755	27	1		1	DCHS2	4	155219313	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	65838794	155219313	35934963	16	40352											
SDHA	6389	mdanderson.org	37	5	236628	236628	+	Missense_Mutation	SNP	C	C	T	rs201139275	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	236628	C	T	236628	3	4	667	1	0	0	0	0	1	0	0	0	13976	739	26	2	1384	2	SDHA	5	236628	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10		236628	180678632	17	40353											
SCAMP1	9522	broad.mit.edu;mdanderson.org	37	5	77745782	77745782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	77745782	G	T	77745782	3	4	667	1	0	0	0	0	1	0	0	0	13883	1377	48	4	684	4	SCAMP1	5	77745782	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	77509154	77745782	103169478	18	40354											
TTC37	9652	broad.mit.edu	37	5	94830430	94830430	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	-	94830430	T	-	94830430	7	5	667	1	0	1	0	1	0	0	0	0	16717	1493	52	0	968	0	TTC37	5	94830430	Frame_Shift_Del	DEL	T	TCGA-KL-8329-01A-11D-2310-10	17084648	94830430	86084830	19	40355											
FAM13B	51306	broad.mit.edu	37	5	137278834	137278834	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	-	137278834	A	-	137278834	7	5	667	1	0	1	0	1	0	0	0	0	5457	127	5	0	417	0	FAM13B	5	137278834	Frame_Shift_Del	DEL	A	TCGA-KL-8329-01A-11D-2310-10	42448404	137278834	43636426	20	40356											
PCDHA8	56140	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	140221090	140221090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	140221090	C	T	140221090	3	4	667	1	0	0	0	0	1	0	0	0	11537	768	27	1	186	1	PCDHA8	5	140221090	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	2942256	140221090	40694170	21	40357											
LARP1	23367	bcgsc.ca	37	5	154173805	154173820	+	Frame_Shift_Del	DEL	ACTACATCAAGCGCCA	ACTACATCAAGCGCCA	-	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	ACTACATCAAGCGCCA	ACTACATCAAGCGCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	-	154173820	ACTACATCAAGCGCCA	-	154173805	7	5	667	1	0	1	0	1	0	0	0	0	8635	564	20	0	1010	0	LARP1	5	154173805	Frame_Shift_Del	DEL	ACTACATCAAGCGCCA	TCGA-KL-8329-01A-11D-2310-10	13952715	154173805	26741455	22	40358											
HLA-B	3106	mdanderson.org	37	6	31324911	31324911	+	Missense_Mutation	SNP	C	C	G	rs1050462	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	31324911	C	G	31324911	3	3	667	1	0	0	0	0	1	0	0	0	7203	536	19	4	1091	4	HLA-B	6	31324911	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10		31324911	139790156	23	40359			1	88		2	2	21	N	C_A	6.266616e-05
HLA-B	3106	bcgsc.ca	37	6	31324931	31324931	+	Missense_Mutation	SNP	A	A	C	rs151341075	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	31324931	A	C	31324931	3	2	667	1	0	0	0	0	1	0	0	0	7203	188	7	5	1111	5	HLA-B	6	31324931	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	20	31324931	139790136	24	40360			1	88		2	2	21	N	C_A	6.266616e-05
HLA-DRB5	3127	mdanderson.org	37	6	32497931	32497931	+	Missense_Mutation	SNP	G	G	A	rs147565130	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	32497931	G	A	32497931	3	1	667	1	0	0	0	0	1	0	0	0	7216	1174	41	2	753	2	HLA-DRB5	6	32497931	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	1173000	32497931	138617136	25	40361											
CDKN1A	1026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	36652171	36652171	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	36652171	C	A	36652171	4	1	667	1	0	0	0	0	0	1	0	0	3160	838	29	4	295	4	CDKN1A	6	36652171	Nonsense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	4154240	36652171	134462896	26	40362											
AKAP12	9590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	151671482	151671482	+	Silent	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	151671482	A	G	151671482	2	3	667	1	0	0	0	0	0	0	0	1	448	11	1	3		3	AKAP12	6	151671482	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	115019311	151671482	19443585	27	40363											
FAM120B	84498	broad.mit.edu;hgsc.bcm.edu	37	6	170627576	170627576	+	Silent	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	170627576	C	T	170627576	2	4	667	1	0	0	0	0	0	0	0	1	5421	639	23	1		1	FAM120B	6	170627576	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	18956094	170627576	487491	28	40364											
HIBADH	11112	broad.mit.edu	37	7	27672041	27672041	+	Silent	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	27672041	A	G	27672041	2	3	667	1	0	0	0	0	0	0	0	1	7106	117	5	3		3	HIBADH	7	27672041	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10		27672041	131466622	29	40365											
KRIT1	889	hgsc.bcm.edu;ucsc.edu	37	7	91851360	91851360	+	Silent	SNP	T	T	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	91851360	T	C	91851360	2	2	667	1	0	0	0	0	0	0	0	1	8452	1722	60	3		3	KRIT1	7	91851360	Silent	SNP	T	TCGA-KL-8329-01A-11D-2310-10	64179319	91851360	67287303	30	40366											
MUC17	140453	mdanderson.org	37	7	100684573	100684573	+	Silent	SNP	G	G	A	rs144023476	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	100684573	G	A	100684573	2	1	667	1	0	0	0	0	0	0	0	1	9981	1103	39	1		1	MUC17	7	100684573	Silent	SNP	G	TCGA-KL-8329-01A-11D-2310-10	8833213	100684573	58454090	31	40367											
PRSS1	5644	mdanderson.org	37	7	142458542	142458542	+	Silent	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	142458542	A	G	142458542	2	3	667	1	0	0	0	0	0	0	0	1	12624	436	16	3		3	PRSS1	7	142458542	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	41773969	142458542	16680121	32	40368	516	2									
PRSS1	5644	mdanderson.org	37	7	142458551	142458551	+	Silent	SNP	C	C	T	rs199713773		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	142458551	C	T	142458551	2	4	667	1	0	0	0	0	0	0	0	1	12624	726	26	2		2	PRSS1	7	142458551	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	9	142458551	16680112	33	40369	516	2									
PABPC1	26986	mdanderson.org	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	101724606	G	A	101724606	3	1	667	1	0	0	0	0	1	0	0	0	11370	1377	48	2	986	2	PABPC1	8	101724606	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		101724606	44639416	34	40370											
SPATC1	375686	broad.mit.edu	37	8	145095684	145095685	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	145095685	-	C	145095684	7	5	667	1	0	1	1	0	0	0	0	0	15029	159	6	0	992	0	SPATC1	8	145095684	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	43371078	145095684	1268338	35	40371											
PLAA	9373	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	26905845	26905845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	26905845	C	T	26905845	3	4	667	1	0	0	0	0	1	0	0	0	12018	478	17	2	339	2	PLAA	9	26905845	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10		26905845	114307586	36	40372											
KIF24	347240	mdanderson.org	37	9	34310782	34310782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	34310782	A	G	34310782	3	3	667	1	0	0	0	0	1	0	0	0	8299	101	4	3	3591	3	KIF24	9	34310782	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	7404937	34310782	106902649	37	40373											
CNTNAP3	79937	broad.mit.edu	37	9	39178299	39178299	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	-	39178299	T	-	39178299	7	5	667	1	0	1	0	1	0	0	0	0	3650	1722	60	0	3349	0	CNTNAP3	9	39178299	Frame_Shift_Del	DEL	T	TCGA-KL-8329-01A-11D-2310-10	4867517	39178299	102035132	38	40374											
OR13C5	138799	mdanderson.org	37	9	107361111	107361111	+	Missense_Mutation	SNP	T	T	C	rs6479259	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	107361111	T	C	107361111	3	2	667	1	0	0	0	0	1	0	0	0	10944	1493	52	3	374	3	OR13C5	9	107361111	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	68182812	107361111	33852320	39	40375											
ZNF462	58499	broad.mit.edu	37	9	109690574	109690575	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	109690575	-	C	109690574	7	5	667	1	0	1	1	0	0	0	0	0	17938	971	34	0	4387	0	ZNF462	9	109690574	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	2329463	109690574	31522857	40	40376											
COL27A1	85301	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	117052528	117052528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	117052528	C	T	117052528	3	4	667	1	0	0	0	0	1	0	0	0	3687	643	23	1	4471	1	COL27A1	9	117052528	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	7361954	117052528	24160903	41	40377											
TNC	3371	broad.mit.edu	37	9	117838693	117838694	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	117838694	-	T	117838693	7	5	667	1	0	1	1	0	0	0	0	0	16282	797	28	0	3853	0	TNC	9	117838693	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	786165	117838693	23374738	42	40378											
OR1Q1	158131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	125377830	125377830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	125377830	C	T	125377830	3	4	667	1	0	0	0	0	1	0	0	0	10978	884	31	1	816	1	OR1Q1	9	125377830	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	7539137	125377830	15835601	43	40379											
NR5A1	2516	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	127262905	127262905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	127262905	G	T	127262905	3	4	667	1	0	0	0	0	1	0	0	0	10642	1386	48	4	1067	4	NR5A1	9	127262905	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	1885075	127262905	13950526	44	40380											
OBP2B	29989	mdanderson.org	37	9	136083528	136083528	+	Missense_Mutation	SNP	T	T	A	rs3192921	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	136083528	T	A	136083528	3	1	667	1	0	0	0	0	1	0	0	0	10818	1638	57	5	259	5	OBP2B	9	136083528	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	8820623	136083528	5129903	45	40381											
CSGALNACT2	55454	mdanderson.org	37	10	43659338	43659339	+	Missense_Mutation	DNP	CT	CT	TG	rs114078794	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	TG	43659339	CT	TG	43659338	3	4	667	1	0	0	0	0	1	0	0	0	3941	668	24	2	1019	2	CSGALNACT2	10	43659338	Missense_Mutation	DNP	CT	TCGA-KL-8329-01A-11D-2310-10		43659338	91875409	46	40382											
CSGALNACT2	55454	mdanderson.org	37	10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	rs76607193	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	43659372	C	T	43659372	4	4	667	1	0	0	0	0	0	1	0	0	3941	528	19	1	1053	1	CSGALNACT2	10	43659372	Nonsense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	34	43659372	91875375	47	40383											
ZNF365	22891	hgsc.bcm.edu;ucsc.edu	37	10	64415147	64415147	+	Silent	SNP	A	A	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	64415147	A	T	64415147	2	4	667	1	0	0	0	0	0	0	0	1	17881	146	6	5		5	ZNF365	10	64415147	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	20755775	64415147	71119600	48	40384											
PTEN	5728	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	89717769	89717769	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	89717769	T	A	89717769	3	1	667	1	0	0	0	0	1	0	0	0	12748	1522	53	5	820	5	PTEN	10	89717769	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	25302622	89717769	45816978	49	40385											
PDCD4	27250	ucsc.edu	37	10	112657808	112657808	+	Missense_Mutation	SNP	G	G	C	rs148548339	alternate_allele	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	112657808	G	C	112657808	3	2	667	1	0	0	0	0	1	0	0	0	11628	1059	37	4	1428	4	PDCD4	10	112657808	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	22940039	112657808	22876939	50	40386											
MUC6	4588	mdanderson.org	37	11	1017966	1017966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	1017966	A	G	1017966	3	3	667	1	0	0	0	0	1	0	0	0	9987	72	3	3	2496	3	MUC6	11	1017966	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10		1017966	133988550	51	40387											
MUC5B	727897	broad.mit.edu	37	11	1264086	1264087	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	1264087	-	C	1264086	7	5	667	1	0	1	1	0	0	0	0	0	9986	1183	41	0	6107	0	MUC5B	11	1264086	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	246120	1264086	133742430	52	40388											
PIK3C2A	5286	broad.mit.edu	37	11	17121508	17121508	+	Silent	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	17121508	A	G	17121508	2	3	667	1	0	0	0	0	0	0	0	1	11916	59	3	3		3	PIK3C2A	11	17121508	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	15857422	17121508	117885008	53	40389											
OR5M8	219484	broad.mit.edu	37	11	56258238	56258239	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	56258239	-	C	56258238	7	5	667	1	0	1	1	0	0	0	0	0	11183	958	34	0	330	0	OR5M8	11	56258238	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	39136730	56258238	78748278	54	40390											
P2RX3	5024	broad.mit.edu;mdanderson.org	37	11	57137381	57137381	+	Missense_Mutation	SNP	G	G	A	rs201360035	alternate_allele	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	57137381	G	A	57137381	3	1	667	1	0	0	0	0	1	0	0	0	11348	1087	38	1	1151	1	P2RX3	11	57137381	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	879143	57137381	77869135	55	40391											
POLA2	23649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	65048558	65048558	+	Silent	SNP	G	G	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	65048558	G	A	65048558	2	1	667	1	0	0	0	0	0	0	0	1	12195	1103	39	1		1	POLA2	11	65048558	Silent	SNP	G	TCGA-KL-8329-01A-11D-2310-10	7911177	65048558	69957958	56	40392											
DHCR7	1717	broad.mit.edu	37	11	71152273	71152273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	71152273	C	T	71152273	3	4	667	1	0	0	0	0	1	0	0	0	4479	608	21	2	817	2	DHCR7	11	71152273	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	6103715	71152273	63854243	57	40393											
FIGNL2	401720	hgsc.bcm.edu;mdanderson.org	37	12	52215205	52215205	+	Silent	SNP	C	C	T	rs116545797	byfrequency;by1000genomes	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	52215205	C	T	52215205	2	4	667	1	0	0	0	0	0	0	0	1	5900	680	24	2		2	FIGNL2	12	52215205	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10		52215205	81636690	58	40394											
B4GALNT1	2583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	58022926	58022926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	58022926	C	T	58022926	3	4	667	1	0	0	0	0	1	0	0	0	1266	652	23	1	905	1	B4GALNT1	12	58022926	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	5807721	58022926	75828969	59	40395											
KIAA1033	23325	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	105504982	105504982	+	Silent	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	105504982	C	T	105504982	2	4	667	1	0	0	0	0	0	0	0	1	8213	535	19	1		1	KIAA1033	12	105504982	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	47482056	105504982	28346913	60	40396											
TCTN2	79867	broad.mit.edu	37	12	124180975	124180976	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	124180976	-	A	124180975	7	5	667	1	0	1	1	0	0	0	0	0	15735	697	25	0	1372	0	TCTN2	12	124180975	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	18675993	124180975	9670920	61	40397											
POTEG	404785	mdanderson.org	37	14	19553760	19553760	+	Missense_Mutation	SNP	G	G	A	rs61430720		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	19553760	G	A	19553760	3	1	667	1	0	0	0	0	1	0	0	0	12273	971	34	2	346	2	POTEG	14	19553760	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		19553760	87795780	62	40398											
AHNAK2	113146	mdanderson.org	37	14	105416872	105416872	+	Missense_Mutation	SNP	T	T	C	rs148787429	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	105416872	T	C	105416872	3	2	667	1	0	0	0	0	1	0	0	0	415	1580	55	3	12475	3	AHNAK2	14	105416872	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	85863112	105416872	1932668	63	40399											
MTA1	9112	ucsc.edu	37	14	105931063	105931063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	105931063	A	G	105931063	3	3	667	1	0	0	0	0	1	0	0	0	9915	72	3	3	1455	3	MTA1	14	105931063	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	514191	105931063	1418477	64	40400											
MTMR10	54893	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	15	31234179	31234179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	31234179	A	T	31234179	3	4	667	1	0	0	0	0	1	0	0	0	9946	98	4	5	509	5	MTMR10	15	31234179	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10		31234179	71297213	65	40401											
OTUD7A	161725	mdanderson.org;bcgsc.ca	37	15	31779425	31779425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	31779425	G	A	31779425	3	1	667	1	0	0	0	0	1	0	0	0	11325	1145	40	1	1466	1	OTUD7A	15	31779425	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	545246	31779425	70751967	66	40402											
IQGAP1	8826	broad.mit.edu;hgsc.bcm.edu	37	15	91030265	91030277	+	Frame_Shift_Del	DEL	GTTCGACGTGCCT	GTTCGACGTGCCT	-	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	GTTCGACGTGCCT	GTTCGACGTGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	-	91030277	GTTCGACGTGCCT	-	91030265	7	5	667	1	0	1	0	1	0	0	0	0	7821	1020	36	0	4230	0	IQGAP1	15	91030265	Frame_Shift_Del	DEL	GTTCGACGTGCCT	TCGA-KL-8329-01A-11D-2310-10	59250840	91030265	11501127	67	40403	517	2									
IQGAP1	8826	bcgsc.ca	37	15	91030266	91030278	+	Frame_Shift_Del	DEL	GTTCGACGTGCCT	GTTCGACGTGCCT	-	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	GTTCGACGTGCCT	GTTCGACGTGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	-	91030278	GTTCGACGTGCCT	-	91030266	7	5	667	1	0	1	0	1	0	0	0	0	7821	1725	60	0	4231	0	IQGAP1	15	91030266	Frame_Shift_Del	DEL	GTTCGACGTGCCT	TCGA-KL-8329-01A-11D-2310-10	1	91030266	11501126	68	40404	517	2									
TPSD1	23430	mdanderson.org	37	16	1306355	1306355	+	Missense_Mutation	SNP	T	T	C	rs1800984	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	1306355	T	C	1306355	3	2	667	1	0	0	0	0	1	0	0	0	16437	1696	59	3	76	3	TPSD1	16	1306355	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10		1306355	89048398	69	40405											
ADCY9	115	broad.mit.edu	37	16	4016581	4016581	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	4016581	T	A	4016581	3	1	667	1	0	0	0	0	1	0	0	0	301	1725	60	5	808	5	ADCY9	16	4016581	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	2710226	4016581	86338172	70	40406											
CSNK2A2	1459	broad.mit.edu	37	16	58199559	58199559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	58199559	A	G	58199559	3	3	667	1	0	0	0	0	1	0	0	0	3960	275	10	3	179	3	CSNK2A2	16	58199559	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	54182978	58199559	32155194	71	40407											
MNT	4335	ucsc.edu	37	17	2290424	2290424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	2290424	T	C	2290424	3	2	667	1	0	0	0	0	1	0	0	0	9685	1580	55	3	232	3	MNT	17	2290424	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10		2290424	78904786	72	40408											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	7577594	7577594	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	7577594	A	T	7577594	4	4	667	1	0	0	0	0	0	1	0	0	16393	389	14	5	603	5	TP53	17	7577594	Nonsense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	5287170	7577594	73617616	73	40409			2	89		3	3	1719	N	T_C_A	1.44291e-05
TP53	7157	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	7578235	7578235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	7578235	T	C	7578235	3	2	667	1	0	0	0	0	1	0	0	0	16393	1406	49	3	680	3	TP53	17	7578235	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	641	7578235	73616975	74	40410			2	89		3	3	1719	N	T_C_A	1.44291e-05
TP53	7157	hgsc.bcm.edu;mdanderson.org	37	17	7579312	7579312	+	Silent	SNP	C	C	T	rs55863639	alternate_allele	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	7579312	C	T	7579312	2	4	667	1	0	0	0	0	0	0	0	1	16393	666	23	1		1	TP53	17	7579312	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	1077	7579312	73615898	75	40411			2	89		3	3	1719	N	T_C_A	1.44291e-05
RAB11FIP4	84440	ucsc.edu	37	17	29844874	29844874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	29844874	G	T	29844874	3	4	667	1	0	0	0	0	1	0	0	0	12909	1203	42	4	556	4	RAB11FIP4	17	29844874	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	22265562	29844874	51350336	76	40412											
TLK2	11011	mdanderson.org	37	17	60637441	60637441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	60637441	G	A	60637441	3	1	667	1	0	0	0	0	1	0	0	0	15956	1058	37	1	819	1	TLK2	17	60637441	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	30792567	60637441	20557769	77	40413											
CASKIN2	57513	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	73502411	73502411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	73502411	G	A	73502411	3	1	667	1	0	0	0	0	1	0	0	0	2669	1261	44	2	2959	2	CASKIN2	17	73502411	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	12864970	73502411	7692799	78	40414											
SERPINB5	5268	mdanderson.org	37	18	61170782	61170782	+	Missense_Mutation	SNP	A	A	G	rs1455555	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	61170782	A	G	61170782	3	3	667	1	0	0	0	0	1	0	0	0	14117	449	16	3	977	3	SERPINB5	18	61170782	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10		61170782	16906466	79	40415											
PLIN5	440503	ucsc.edu;bcgsc.ca	37	19	4534034	4534034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	4534034	T	C	4534034	3	2	667	1	0	0	0	0	1	0	0	0	12100	1667	58	3	1366	3	PLIN5	19	4534034	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10		4534034	54594949	80	40416											
EMR2	30817	mdanderson.org	37	19	14877799	14877799	+	Missense_Mutation	SNP	G	G	C	rs74182236		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	14877799	G	C	14877799	3	2	667	1	0	0	0	0	1	0	0	0	5107	971	34	4	2057	4	EMR2	19	14877799	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	10343765	14877799	44251184	81	40417											
ZNF676	163223	mdanderson.org	37	19	22363737	22363737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	22363737	C	G	22363737	3	3	667	1	0	0	0	0	1	0	0	0	18095	855	30	4	988	4	ZNF676	19	22363737	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	7485938	22363737	36765246	82	40418											
ANKRD27	84079	broad.mit.edu;mdanderson.org	37	19	33113410	33113410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	33113410	T	C	33113410	3	2	667	1	0	0	0	0	1	0	0	0	655	1551	54	3	1455	3	ANKRD27	19	33113410	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	10749673	33113410	26015573	83	40419											
CEACAM5	1048	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	42222091	42222091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	42222091	C	T	42222091	3	4	667	1	0	0	0	0	1	0	0	0	3197	652	23	1	1304	1	CEACAM5	19	42222091	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	9108681	42222091	16906892	84	40420											
ZNF225	7768	broad.mit.edu;hgsc.bcm.edu	37	19	44635141	44635142	+	Frame_Shift_Ins	INS	-	-	CAAA	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	CAAA	44635142	-	CAAA	44635141	7	5	667	1	0	1	1	0	0	0	0	0	17791	855	30	0	388	0	ZNF225	19	44635141	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	2413050	44635141	14493842	85	40421	518	2									
ZNF225	7768	bcgsc.ca	37	19	44635142	44635143	+	Frame_Shift_Ins	INS	-	-	CAAA	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	CAAA	44635143	-	CAAA	44635142	7	5	667	1	0	1	1	0	0	0	0	0	17791	581	21	0	389	0	ZNF225	19	44635142	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	1	44635142	14493841	86	40422	518	2									
ZNF285	26974	mdanderson.org	37	19	44890685	44890685	+	Silent	SNP	T	T	G	rs73039936	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	44890685	T	G	44890685	2	3	667	1	0	0	0	0	0	0	0	1	17834	1770	62	5		5	ZNF285	19	44890685	Silent	SNP	T	TCGA-KL-8329-01A-11D-2310-10	255543	44890685	14238298	87	40423											
LILRB5	10990	mdanderson.org	37	19	54758897	54758897	+	Missense_Mutation	SNP	A	A	T	rs201754865		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	54758897	A	T	54758897	3	4	667	1	0	0	0	0	1	0	0	0	8801	188	7	5	851	5	LILRB5	19	54758897	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	9868212	54758897	4370086	88	40424			3	90		3	3	394	N	G_C_A	7.556592e-07
LILRB5	10990	mdanderson.org	37	19	54759241	54759241	+	Missense_Mutation	SNP	C	C	G	rs146167320	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	54759241	C	G	54759241	3	3	667	1	0	0	0	0	1	0	0	0	8801	768	27	4	951	4	LILRB5	19	54759241	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	344	54759241	4369742	89	40425			3	90		3	3	394	N	G_C_A	7.556592e-07
LILRB5	10990	mdanderson.org	37	19	54759290	54759290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	54759290	G	A	54759290	3	1	667	1	0	0	0	0	1	0	0	0	8801	1203	42	2	1000	2	LILRB5	19	54759290	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	49	54759290	4369693	90	40426			3	90		3	3	394	N	G_C_A	7.556592e-07
LILRA4	23547	mdanderson.org	37	19	54845018	54845018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	54845018	T	C	54845018	3	2	667	1	0	0	0	0	1	0	0	0	8794	1638	57	3	178	3	LILRA4	19	54845018	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	85728	54845018	4283965	91	40427	519	2									
LILRA4	23547	mdanderson.org	37	19	54845027	54845027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	54845027	A	T	54845027	3	4	667	1	0	0	0	0	1	0	0	0	8794	304	11	5	187	5	LILRA4	19	54845027	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	9	54845027	4283956	92	40428	519	2									
CSRP2BP	57325	broad.mit.edu;mdanderson.org;bcgsc.ca	37	20	18162415	18162415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	C	18162415	T	C	18162415	3	2	667	1	0	0	0	0	1	0	0	0	3970	1638	57	3	1759	3	CSRP2BP	20	18162415	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10		18162415	44863105	93	40429											
EEF1A2	1917	broad.mit.edu;mdanderson.org	37	20	62127325	62127325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	62127325	C	T	62127325	3	4	667	1	0	0	0	0	1	0	0	0	4926	652	23	1	1207	1	EEF1A2	20	62127325	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	43964910	62127325	898195	94	40430											
KRTAP26-1	388818	broad.mit.edu	37	21	31692295	31692296	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	31692296	-	G	31692295	7	5	667	1	0	1	1	0	0	0	0	0	8550	768	27	0	577	0	KRTAP26-1	21	31692295	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10		31692295	16437600	95	40431											
TIAM1	7074	broad.mit.edu;hgsc.bcm.edu	37	21	32624265	32624265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	32624265	C	T	32624265	3	4	667	1	0	0	0	0	1	0	0	0	15902	864	30	2	3667	2	TIAM1	21	32624265	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	931970	32624265	15505630	96	40432											
GCFC1	94104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	21	34134451	34134451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	T	34134451	G	T	34134451	3	4	667	1	0	0	0	0	1	0	0	0	6296	942	33	4	2104	4	GCFC1	21	34134451	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	1510186	34134451	13995444	97	40433											
SIK1	150094	broad.mit.edu	37	21	44837550	44837551	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	44837551	-	G	44837550	7	5	667	1	0	1	1	0	0	0	0	0	14330	768	27	0	510	0	SIK1	21	44837550	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	10703099	44837550	3292345	98	40434											
MCM3AP	8888	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	47705096	47705096	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	47705096	T	A	47705096	3	1	667	1	0	0	0	0	1	0	0	0	9395	1722	60	5	5949	5	MCM3AP	21	47705096	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	2867546	47705096	424799	99	40435											
TRIOBP	11078	mdanderson.org	37	22	38120095	38120095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	A	38120095	G	A	38120095	3	1	667	1	0	0	0	0	1	0	0	0	16565	942	33	2	1550	2	TRIOBP	22	38120095	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		38120095	13184471	100	40436											
KDM5C	8242	broad.mit.edu	37	X	53222786	53222786	+	Silent	SNP	A	A	G	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f	G	53222786	A	G	53222786	2	3	667	1	0	0	0	0	0	0	0	1	8142	40	2	3		3	KDM5C	23	53222786	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10		53222786	102047774	101	40437											
SKI	6497	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	2235813	2235813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	2235813	G	T	2235813	3	4	668	1	0	0	0	0	1	0	0	0	14370	1145	40	4	1574	4	SKI	1	2235813	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		2235813	247014808	1	40438											
PLK3	1263	broad.mit.edu	37	1	45270133	45270133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	C	45270133	T	C	45270133	3	2	668	1	0	0	0	0	1	0	0	0	12104	1609	56	3	1511	3	PLK3	1	45270133	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	43034320	45270133	203980488	2	40439											
C1orf52	148423	broad.mit.edu	37	1	85718363	85718363	+	Silent	SNP	A	A	G	rs111657378		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	85718363	A	G	85718363	2	3	668	1	0	0	0	0	0	0	0	1	2046	59	3	3		3	C1orf52	1	85718363	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	40448230	85718363	163532258	3	40440											
NOTCH2	4853	broad.mit.edu	37	1	120462211	120462211	+	Silent	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	120462211	A	G	120462211	2	3	668	1	0	0	0	0	0	0	0	1	10555	59	3	3		3	NOTCH2	1	120462211	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	34743848	120462211	128788410	4	40441											
FLG	2312	bcgsc.ca	37	1	152283467	152283467	+	Missense_Mutation	SNP	G	G	C	rs200557207		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	C	152283467	G	C	152283467	3	2	668	1	0	0	0	0	1	0	0	0	5929	1057	37	4	8294	4	FLG	1	152283467	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	31821256	152283467	96967154	5	40442											
AQP10	89872	mdanderson.org	37	1	154294464	154294464	+	Missense_Mutation	SNP	A	A	G	rs77290607		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	154294464	A	G	154294464	3	3	668	1	0	0	0	0	1	0	0	0	822	43	2	3	167	3	AQP10	1	154294464	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	2010997	154294464	94956157	6	40443	520	2									
AQP10	89872	mdanderson.org	37	1	154294471	154294471	+	Silent	SNP	C	C	T	rs78213238	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	154294471	C	T	154294471	2	4	668	1	0	0	0	0	0	0	0	1	822	825	29	2		2	AQP10	1	154294471	Silent	SNP	C	TCGA-KL-8330-01A-11D-2310-10	7	154294471	94956150	7	40444	520	2									
FMN2	56776	mdanderson.org	37	1	240371328	240371328	+	Silent	SNP	G	G	A	rs71646895	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	240371328	G	A	240371328	2	1	668	1	0	0	0	0	0	0	0	1	5957	1103	39	1		1	FMN2	1	240371328	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	86076857	240371328	8879293	8	40445											
PPM1G	5496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	27607890	27607890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	27607890	G	A	27607890	3	1	668	1	0	0	0	0	1	0	0	0	12350	1145	40	1	1189	1	PPM1G	2	27607890	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		27607890	215591483	9	40446											
TIA1	7072	bcgsc.ca	37	2	70463215	70463215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	70463215	A	G	70463215	3	3	668	1	0	0	0	0	1	0	0	0	15899	217	8	3	1089	3	TIA1	2	70463215	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	42855325	70463215	172736158	10	40447											
ATP6V1B1	525	broad.mit.edu;mdanderson.org;bcgsc.ca	37	2	71192114	71192114	+	Missense_Mutation	SNP	G	G	A	rs140980255		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	71192114	G	A	71192114	3	1	668	1	0	0	0	0	1	0	0	0	1178	1059	37	1	1459	1	ATP6V1B1	2	71192114	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	728899	71192114	172007259	11	40448											
DUSP11	8446	ucsc.edu;bcgsc.ca	37	2	73996401	73996401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	73996401	A	G	73996401	3	3	668	1	0	0	0	0	1	0	0	0	4813	304	11	3	527	3	DUSP11	2	73996401	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	2804287	73996401	169202972	12	40449											
SCG2	7857	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	224462648	224462648	+	Silent	SNP	C	C	T	rs143843249	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	224462648	C	T	224462648	2	4	668	1	0	0	0	0	0	0	0	1	13904	523	19	1		1	SCG2	2	224462648	Silent	SNP	C	TCGA-KL-8330-01A-11D-2310-10	150466247	224462648	18736725	13	40450											
ZNF445	353274	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	44488434	44488434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	C	44488434	G	C	44488434	3	2	668	1	0	0	0	0	1	0	0	0	17930	1261	44	4	370	4	ZNF445	3	44488434	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		44488434	153533996	14	40451											
TMEM108	66000	mdanderson.org	37	3	133098856	133098856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	133098856	G	A	133098856	3	1	668	1	0	0	0	0	1	0	0	0	16036	1087	38	1	307	1	TMEM108	3	133098856	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	88610422	133098856	64923574	15	40452											
MUC4	4585	mdanderson.org	37	3	195505833	195505833	+	Silent	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	195505833	G	A	195505833	2	1	668	1	0	0	0	0	0	0	0	1	9985	1335	47	2		2	MUC4	3	195505833	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	62406977	195505833	2516597	16	40453			1	91		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	3	195509209	195509209	+	Missense_Mutation	SNP	G	G	A	rs79077485		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	195509209	G	A	195509209	3	1	668	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195509209	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	3376	195509209	2513221	17	40454			1	91		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	3	195511474	195511474	+	Missense_Mutation	SNP	A	A	G	rs77680876	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	195511474	A	G	195511474	3	3	668	1	0	0	0	0	1	0	0	0	9985	72	3	3		3	MUC4	3	195511474	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	2265	195511474	2510956	18	40455	521	2	1	91		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	3	195511479	195511479	+	Silent	SNP	G	G	A	rs200148982		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	195511479	G	A	195511479	2	1	668	1	0	0	0	0	0	0	0	1	9985	1335	47	2		2	MUC4	3	195511479	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	5	195511479	2510951	19	40456	521	2	1	91		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	3	195511889	195511889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	195511889	C	T	195511889	3	4	668	1	0	0	0	0	1	0	0	0	9985	681	24	2		2	MUC4	3	195511889	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	410	195511889	2510541	20	40457			1	91		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	3	195515422	195515422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	195515422	G	T	195515422	3	4	668	1	0	0	0	0	1	0	0	0	9985	1000	35	4		4	MUC4	3	195515422	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	3533	195515422	2507008	21	40458			1	91		6	5	9590	N	G_C_A	1.391805e-08
RBM47	54502	broad.mit.edu;hgsc.bcm.edu	37	4	40438607	40438608	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	40438608	-	T	40438607	7	5	668	1	0	1	1	0	0	0	0	0	13154	681	24	0	612	0	RBM47	4	40438607	Frame_Shift_Ins	INS	-	TCGA-KL-8330-01A-11D-2310-10		40438607	150715669	22	40459	522	2									
RBM47	54502	bcgsc.ca	37	4	40438608	40438609	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	40438609	-	T	40438608	7	5	668	1	0	1	1	0	0	0	0	0	13154	1521	53	0	613	0	RBM47	4	40438608	Frame_Shift_Ins	INS	-	TCGA-KL-8330-01A-11D-2310-10	1	40438608	150715668	23	40460	522	2									
UGT2B7	7364	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	69978239	69978239	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	69978239	C	T	69978239	4	4	668	1	0	0	0	0	0	1	0	0	16974	876	31	1	1397	1	UGT2B7	4	69978239	Nonsense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	29539631	69978239	121176037	24	40461											
RUFY3	22902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	71588442	71588442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	71588442	C	A	71588442	3	1	668	1	0	0	0	0	1	0	0	0	13753	478	17	4	516	4	RUFY3	4	71588442	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	1610203	71588442	119565834	25	40462											
AGPAT9	84803	broad.mit.edu	37	4	84518658	84518658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	C	84518658	T	C	84518658	3	2	668	1	0	0	0	0	1	0	0	0	392	1725	60	3	1020	3	AGPAT9	4	84518658	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	12930216	84518658	106635618	26	40463											
LARP7	51574	broad.mit.edu	37	4	113568911	113568911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	113568911	A	G	113568911	3	3	668	1	0	0	0	0	1	0	0	0	8640	43	2	3	1089	3	LARP7	4	113568911	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	29050253	113568911	77585365	27	40464											
ANK2	287	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	114275928	114275928	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	114275928	C	T	114275928	4	4	668	1	0	0	0	0	0	1	0	0	621	528	19	1	6369	1	ANK2	4	114275928	Nonsense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	707017	114275928	76878348	28	40465											
SPEF2	79925	ucsc.edu	37	5	35774017	35774017	+	Silent	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	35774017	A	G	35774017	2	3	668	1	0	0	0	0	0	0	0	1	15047	69	3	3		3	SPEF2	5	35774017	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10		35774017	145141243	29	40466											
CAMK4	814	bcgsc.ca	37	5	110820081	110820081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	110820081	G	A	110820081	3	1	668	1	0	0	0	0	1	0	0	0	2607	1203	42	2	1381	2	CAMK4	5	110820081	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	75046064	110820081	70095179	30	40467											
SRFBP1	153443	ucsc.edu	37	5	121309892	121309892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	C	121309892	T	C	121309892	3	2	668	1	0	0	0	0	1	0	0	0	15156	1739	60	3	44	3	SRFBP1	5	121309892	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	10489811	121309892	59605368	31	40468											
PCDHGC3	5098	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	140857474	140857474	+	Silent	SNP	C	C	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	140857474	C	T	140857474	2	4	668	1	0	0	0	0	0	0	0	1	11576	535	19	1		1	PCDHGC3	5	140857474	Silent	SNP	C	TCGA-KL-8330-01A-11D-2310-10	19547582	140857474	40057786	32	40469											
FAM8A1	51439	mdanderson.org	37	6	17608519	17608519	+	Silent	SNP	T	T	C	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	C	17608519	T	C	17608519	2	2	668	1	0	0	0	0	0	0	0	1	5656	1596	56	3		3	FAM8A1	6	17608519	Silent	SNP	T	TCGA-KL-8330-01A-11D-2310-10		17608519	153506548	33	40470											
HLA-C	3107	mdanderson.org	37	6	31238970	31238970	+	Missense_Mutation	SNP	T	T	A	rs142570222	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	31238970	T	A	31238970	3	1	668	1	0	0	0	0	1	0	0	0	7204	1696	59	5	625	5	HLA-C	6	31238970	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	13630451	31238970	139876097	34	40471											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	56417258	56417258	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	56417258	T	A	56417258	3	1	668	1	0	0	0	0	1	0	0	0	4785	1838	64	5	7224	5	DST	6	56417258	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	25178288	56417258	114697809	35	40472											
SYNJ2	8871	mdanderson.org	37	6	158507981	158507981	+	Silent	SNP	G	G	A	rs2296506	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	158507981	G	A	158507981	2	1	668	1	0	0	0	0	0	0	0	1	15465	1190	42	2		2	SYNJ2	6	158507981	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	102090723	158507981	12607086	36	40473											
DOCK4	9732	broad.mit.edu;ucsc.edu	37	7	111368593	111368593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	111368593	C	G	111368593	3	3	668	1	0	0	0	0	1	0	0	0	4691	565	20	4	266	4	DOCK4	7	111368593	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10		111368593	47770070	37	40474											
BHLHE22	27319	mdanderson.org	37	8	65493429	65493429	+	Missense_Mutation	SNP	T	T	G	rs7016250	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	65493429	T	G	65493429	3	3	668	1	0	0	0	0	1	0	0	0	1421	1551	54	5	84	5	BHLHE22	8	65493429	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10		65493429	80870593	38	40475											
CHMP4C	92421	broad.mit.edu	37	8	82644910	82644911	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	82644911	-	G	82644910	7	5	668	1	0	1	1	0	0	0	0	0	3360	644	23	0	51	0	CHMP4C	8	82644910	Frame_Shift_Ins	INS	-	TCGA-KL-8330-01A-11D-2310-10	17151481	82644910	63719112	39	40476											
CSMD3	114788	mdanderson.org	37	8	113237129	113237129	+	Silent	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	113237129	A	G	113237129	2	3	668	1	0	0	0	0	0	0	0	1	3948	41	2	3		3	CSMD3	8	113237129	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	30592219	113237129	33126893	40	40477											
ZNF696	79943	mdanderson.org	37	8	144378277	144378277	+	Silent	SNP	G	G	C	rs61729412	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	C	144378277	G	C	144378277	2	2	668	1	0	0	0	0	0	0	0	1	18111	1161	41	4		4	ZNF696	8	144378277	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	31141148	144378277	1985745	41	40478											
ZCCHC6	79670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	88937294	88937294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	88937294	G	A	88937294	3	1	668	1	0	0	0	0	1	0	0	0	17604	1261	44	2	1569	2	ZCCHC6	9	88937294	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		88937294	52276137	42	40479											
OR13C2	392376	mdanderson.org	37	9	107367674	107367674	+	Missense_Mutation	SNP	G	G	A	rs7025570	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	107367674	G	A	107367674	3	1	668	1	0	0	0	0	1	0	0	0	10941	1174	41	2	724	2	OR13C2	9	107367674	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	18430380	107367674	33845757	43	40480											
CDHR5	53841	broad.mit.edu	37	11	618824	618824	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	-	618824	A	-	618824	7	5	668	1	0	1	0	1	0	0	0	0	3124	304	11	0	814	0	CDHR5	11	618824	Frame_Shift_Del	DEL	A	TCGA-KL-8330-01A-11D-2310-10		618824	134387692	44	40481	523	2									
CDHR5	53841	broad.mit.edu	37	11	618827	618827	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	-	618827	T	-	618827	7	5	668	1	0	1	0	1	0	0	0	0	3124	1725	60	0	817	0	CDHR5	11	618827	Frame_Shift_Del	DEL	T	TCGA-KL-8330-01A-11D-2310-10	3	618827	134387689	45	40482	523	2									
MUC6	4588	bcgsc.ca	37	11	1017280	1017280	+	Missense_Mutation	SNP	G	G	T	rs199539548		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	1017280	G	T	1017280	3	4	668	1	0	0	0	0	1	0	0	0	9987	1174	41	4	1810	4	MUC6	11	1017280	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	398453	1017280	133989236	46	40483											
MUC6	4588	ucsc.edu;mdanderson.org;bcgsc.ca	37	11	1024889	1024889	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	1024889	C	G	1024889	3	3	668	1	0	0	0	0	1	0	0	0	9987	564	20	4	4179	4	MUC6	11	1024889	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	7609	1024889	133981627	47	40484											
MUC5B	727897	mdanderson.org	37	11	1270382	1270382	+	Missense_Mutation	SNP	C	C	G	rs71469879		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	1270382	C	G	1270382	3	3	668	1	0	0	0	0	1	0	0	0	9986	536	19	4	12403	4	MUC5B	11	1270382	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	245493	1270382	133736134	48	40485											
FUT4	2526	ucsc.edu;mdanderson.org	37	11	94278062	94278062	+	Missense_Mutation	SNP	A	A	G	rs2230273	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	94278062	A	G	94278062	3	3	668	1	0	0	0	0	1	0	0	0	6113	217	8	3	765	3	FUT4	11	94278062	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	93007680	94278062	40728454	49	40486											
MMP3	4314	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	11	102709283	102709283	+	Silent	SNP	T	T	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	102709283	T	G	102709283	2	3	668	1	0	0	0	0	0	0	0	1	9673	1565	54	5		5	MMP3	11	102709283	Silent	SNP	T	TCGA-KL-8330-01A-11D-2310-10	8431221	102709283	32297233	50	40487											
GLB1L2	89944	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	134214285	134214285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	134214285	G	T	134214285	3	4	668	1	0	0	0	0	1	0	0	0	6436	1377	48	4	299	4	GLB1L2	11	134214285	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	31505002	134214285	792231	51	40488											
CD163	9332	mdanderson.org;bcgsc.ca	37	12	7649507	7649507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	7649507	G	T	7649507	3	4	668	1	0	0	0	0	1	0	0	0	2969	942	33	4	2517	4	CD163	12	7649507	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		7649507	126202388	52	40489											
KCNJ8	3764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	21918737	21918737	+	Silent	SNP	G	G	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	21918737	G	T	21918737	2	4	668	1	0	0	0	0	0	0	0	1	8063	1124	39	4		4	KCNJ8	12	21918737	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	14269230	21918737	111933158	53	40490											
KRT85	3891	mdanderson.org	37	12	52760938	52760938	+	Silent	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	52760938	G	A	52760938	2	1	668	1	0	0	0	0	0	0	0	1	8506	1103	39	1		1	KRT85	12	52760938	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	30842201	52760938	81090957	54	40491											
RPH3A	22895	hgsc.bcm.edu;mdanderson.org	37	12	113303275	113303275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	113303275	A	G	113303275	3	3	668	1	0	0	0	0	1	0	0	0	13564	43	2	3	301	3	RPH3A	12	113303275	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	60542337	113303275	20548620	55	40492											
KIAA1704	55425	broad.mit.edu;bcgsc.ca	37	13	45582989	45582989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	45582989	A	G	45582989	3	3	668	1	0	0	0	0	1	0	0	0	8259	72	3	3	397	3	KIAA1704	13	45582989	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10		45582989	69586889	56	40493											
LTB4R2	56413	mdanderson.org	37	14	24780364	24780364	+	Missense_Mutation	SNP	A	A	G	rs1950504	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	24780364	A	G	24780364	3	3	668	1	0	0	0	0	1	0	0	0	9079	275	10	3	496	3	LTB4R2	14	24780364	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10		24780364	82569176	57	40494											
AHNAK2	113146	mdanderson.org	37	14	105413649	105413649	+	Silent	SNP	A	A	G	rs201545349		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	105413649	A	G	105413649	2	3	668	1	0	0	0	0	0	0	0	1	415	214	8	3		3	AHNAK2	14	105413649	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	80633285	105413649	1935891	58	40495			2	92		4	4	2013	N	T_C_A	2.159996e-08
AHNAK2	113146	mdanderson.org	37	14	105413682	105413682	+	Silent	SNP	A	A	G	rs200358766	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	105413682	A	G	105413682	2	3	668	1	0	0	0	0	0	0	0	1	415	175	7	3		3	AHNAK2	14	105413682	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	33	105413682	1935858	59	40496			2	92		4	4	2013	N	T_C_A	2.159996e-08
AHNAK2	113146	mdanderson.org	37	14	105413702	105413702	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	105413702	T	G	105413702	3	3	668	1	0	0	0	0	1	0	0	0	415	1464	51	5	9305	5	AHNAK2	14	105413702	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	20	105413702	1935838	60	40497			2	92		4	4	2013	N	T_C_A	2.159996e-08
AHNAK2	113146	mdanderson.org	37	14	105415661	105415661	+	Missense_Mutation	SNP	C	C	T	rs200010377		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	105415661	C	T	105415661	3	4	668	1	0	0	0	0	1	0	0	0	415	710	25	2	11264	2	AHNAK2	14	105415661	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	1959	105415661	1933879	61	40498			2	92		4	4	2013	N	T_C_A	2.159996e-08
PPIP5K1	9677	broad.mit.edu	37	15	43827440	43827440	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	-	43827440	A	-	43827440	7	5	668	1	0	1	0	1	0	0	0	0	12342	217	8	0	571	0	PPIP5K1	15	43827440	Frame_Shift_Del	DEL	A	TCGA-KL-8330-01A-11D-2310-10		43827440	58703952	62	40499											
MYO5C	55930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	52562050	52562050	+	Silent	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	52562050	G	A	52562050	2	1	668	1	0	0	0	0	0	0	0	1	10087	1103	39	1		1	MYO5C	15	52562050	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	8734610	52562050	49969342	63	40500											
WHAMM	123720	mdanderson.org	37	15	83478545	83478545	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	83478545	C	G	83478545	3	3	668	1	0	0	0	0	1	0	0	0	17373	739	26	4	69	4	WHAMM	15	83478545	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	30916495	83478545	19052847	64	40501											
SULT1A1	6817	mdanderson.org	37	16	28620121	28620121	+	Missense_Mutation	SNP	G	G	A	rs200542791	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	28620121	G	A	28620121	3	1	668	1	0	0	0	0	1	0	0	0	15384	1116	39	1	859	1	SULT1A1	16	28620121	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		28620121	61734632	65	40502											
NECAB2	54550	broad.mit.edu;mdanderson.org	37	16	84024120	84024120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	84024120	G	A	84024120	3	1	668	1	0	0	0	0	1	0	0	0	10312	1145	40	1	503	1	NECAB2	16	84024120	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	55403999	84024120	6330633	66	40503											
CACNB1	782	ucsc.edu	37	17	37331681	37331681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	C	37331681	T	C	37331681	3	2	668	1	0	0	0	0	1	0	0	0	2554	1667	58	3	238	3	CACNB1	17	37331681	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10		37331681	43863529	67	40504											
RNF213	57674	ucsc.edu	37	17	78326830	78326830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	78326830	A	G	78326830	3	3	668	1	0	0	0	0	1	0	0	0	13490	188	7	3	10839	3	RNF213	17	78326830	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	40995149	78326830	2868380	68	40505											
MIB1	57534	broad.mit.edu	37	18	19379923	19379923	+	Silent	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	19379923	A	G	19379923	2	3	668	1	0	0	0	0	0	0	0	1	9573	272	10	3		3	MIB1	18	19379923	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10		19379923	58697325	69	40506											
ABCA7	10347	ucsc.edu	37	19	1047002	1047002	+	Silent	SNP	A	A	G	rs3752234	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	1047002	A	G	1047002	2	3	668	1	0	0	0	0	0	0	0	1	37	146	6	3		3	ABCA7	19	1047002	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10		1047002	58081981	70	40507											
MUC16	94025	mdanderson.org	37	19	9054242	9054242	+	Silent	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	9054242	A	G	9054242	2	3	668	1	0	0	0	0	0	0	0	1	9980	272	10	3		3	MUC16	19	9054242	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	8007240	9054242	50074741	71	40508											
PSG2	5670	mdanderson.org	37	19	43585274	43585274	+	Silent	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	43585274	A	G	43585274	2	3	668	1	0	0	0	0	0	0	0	1	12665	175	7	3		3	PSG2	19	43585274	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	34531032	43585274	15543709	72	40509											
ELSPBP1	64100	mdanderson.org;bcgsc.ca	37	19	48525507	48525507	+	Missense_Mutation	SNP	G	G	A	rs2303690	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	48525507	G	A	48525507	3	1	668	1	0	0	0	0	1	0	0	0	5085	1059	37	1	613	1	ELSPBP1	19	48525507	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	4940233	48525507	10603476	73	40510											
ZNF415	55786	broad.mit.edu	37	19	53619570	53619570	+	Silent	SNP	G	G	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	53619570	G	T	53619570	2	4	668	1	0	0	0	0	0	0	0	1	17904	1219	43	4		4	ZNF415	19	53619570	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	5094063	53619570	5509413	74	40511											
EPS8L1	54869	hgsc.bcm.edu;bcgsc.ca	37	19	55598783	55598783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	55598783	G	T	55598783	3	4	668	1	0	0	0	0	1	0	0	0	5197	1145	40	4	2187	4	EPS8L1	19	55598783	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	1979213	55598783	3530200	75	40512											
B4GALT5	9334	ucsc.edu	37	20	48330133	48330133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	48330133	A	G	48330133	3	3	668	1	0	0	0	0	1	0	0	0	1274	275	10	3	1107	3	B4GALT5	20	48330133	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10		48330133	14695387	76	40513											
SLCO4A1	28231	broad.mit.edu	37	20	61292501	61292501	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	61292501	T	G	61292501	3	3	668	1	0	0	0	0	1	0	0	0	14742	1809	63	5	1109	5	SLCO4A1	20	61292501	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	12962368	61292501	1733019	77	40514											
GSC2	2928	hgsc.bcm.edu;mdanderson.org	37	22	19137290	19137290	+	Silent	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	19137290	G	A	19137290	2	1	668	1	0	0	0	0	0	0	0	1	6822	1281	45	2		2	GSC2	22	19137290	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10		19137290	32167276	78	40515											
DMD	1756	broad.mit.edu;bcgsc.ca	37	X	32408279	32408279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	T	32408279	G	T	32408279	3	4	668	1	0	0	0	0	1	0	0	0	4582	1377	48	4	7148	4	DMD	23	32408279	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		32408279	122862281	79	40516											
THOC2	57187	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	122759902	122759902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	A	122759902	G	A	122759902	3	1	668	1	0	0	0	0	1	0	0	0	15877	1261	44	2	1919	2	THOC2	23	122759902	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	90351623	122759902	32510658	80	40517											
RBMX	27316	hgsc.bcm.edu	37	X	135956574	135956574	+	Silent	SNP	C	C	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	135956574	C	G	135956574	2	3	668	1	0	0	0	0	0	0	0	1	13164	755	27	4		4	RBMX	23	135956574	Silent	SNP	C	TCGA-KL-8330-01A-11D-2310-10	13196672	135956574	19313986	81	40518											
MTM1	4534	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	149764981	149764981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563	G	149764981	A	G	149764981	3	3	668	1	0	0	0	0	1	0	0	0	9944	101	4	3	89	3	MTM1	23	149764981	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	13808407	149764981	5505579	82	40519											
C1orf177	163747	hgsc.bcm.edu	37	1	55273584	55273584	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	-	55273584	C	-	55273584	7	5	669	1	0	1	0	1	0	0	0	0	2019	855	30	0	394	0	C1orf177	1	55273584	Frame_Shift_Del	DEL	C	TCGA-KL-8331-01A-11D-2310-10		55273584	193977037	1	40520											
PDE4DIP	9659	ucsc.edu;mdanderson.org;bcgsc.ca	37	1	144931626	144931626	+	Missense_Mutation	SNP	T	T	C	rs79158320	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	144931626	T	C	144931626	3	2	669	1	0	0	0	0	1	0	0	0	11650	1493	52	3	7616	3	PDE4DIP	1	144931626	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	89658042	144931626	104318995	2	40521											
DTL	51514	ucsc.edu	37	1	212254059	212254059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	212254059	T	C	212254059	3	2	669	1	0	0	0	0	1	0	0	0	4789	1551	54	3	1278	3	DTL	1	212254059	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	67322433	212254059	36996562	3	40522											
POTEF	728378	hgsc.bcm.edu;mdanderson.org	37	2	130832597	130832597	+	Silent	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	130832597	G	A	130832597	2	1	669	1	0	0	0	0	0	0	0	1	12272	1074	38	1		1	POTEF	2	130832597	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10		130832597	112366776	4	40523											
SCN2A	6326	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	166211041	166211041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	166211041	G	A	166211041	3	1	669	1	0	0	0	0	1	0	0	0	13929	1145	40	1	3417	1	SCN2A	2	166211041	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	35378444	166211041	76988332	5	40524											
MUC4	4585	mdanderson.org	37	3	195506398	195506398	+	Missense_Mutation	SNP	G	G	T	rs74573747		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	195506398	G	T	195506398	3	4	669	1	0	0	0	0	1	0	0	0	9985	1000	35	4		4	MUC4	3	195506398	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10		195506398	2516032	6	40525											
ZFYVE28	57732	ucsc.edu;mdanderson.org	37	4	2307125	2307125	+	Silent	SNP	G	G	A	rs143836367	byfrequency;alternate_allele	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	2307125	G	A	2307125	2	1	669	1	0	0	0	0	0	0	0	1	17682	1161	41	2		2	ZFYVE28	4	2307125	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10		2307125	188847151	7	40526											
FGG	2266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	155529663	155529663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	155529663	G	A	155529663	3	1	669	1	0	0	0	0	1	0	0	0	5877	1348	47	2	586	2	FGG	4	155529663	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	153222538	155529663	35624613	8	40527											
LMBRD2	92255	broad.mit.edu	37	5	36123063	36123063	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	-	36123063	A	-	36123063	7	5	669	1	0	1	0	1	0	0	0	0	8850	173	6	0	1308	0	LMBRD2	5	36123063	Frame_Shift_Del	DEL	A	TCGA-KL-8331-01A-11D-2310-10		36123063	144792197	9	40528											
SLC30A5	64924	broad.mit.edu	37	5	68390134	68390134	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	-	68390134	G	-	68390134	7	5	669	1	0	1	0	1	0	0	0	0	14571	1116	39	0	54	0	SLC30A5	5	68390134	Frame_Shift_Del	DEL	G	TCGA-KL-8331-01A-11D-2310-10	32267071	68390134	112525126	10	40529											
HAPLN1	1404	bcgsc.ca	37	5	82937410	82937410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	82937410	G	A	82937410	3	1	669	1	0	0	0	0	1	0	0	0	6961	1087	38	1	98	1	HAPLN1	5	82937410	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	14547276	82937410	97977850	11	40530											
DHX16	8449	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	30623374	30623374	+	Silent	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	30623374	C	T	30623374	2	4	669	1	0	0	0	0	0	0	0	1	4504	521	18	2		2	DHX16	6	30623374	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10		30623374	140491693	12	40531											
MUC21	394263	mdanderson.org	37	6	30954600	30954600	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	30954600	A	C	30954600	3	2	669	1	0	0	0	0	1	0	0	0	9984	243	9	5	654	5	MUC21	6	30954600	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10	331226	30954600	140160467	13	40532											
C4A	720	broad.mit.edu	37	6	31963559	31963559	+	Silent	SNP	A	A	G	rs2258218	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	G	31963559	A	G	31963559	2	3	669	1	0	0	0	0	0	0	0	1	2249	275	10	3		3	C4A	6	31963559	Silent	SNP	A	TCGA-KL-8331-01A-11D-2310-10	1008959	31963559	139151508	14	40533											
TNXB	7148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	32052298	32052298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	32052298	G	A	32052298	3	1	669	1	0	0	0	0	1	0	0	0	16358	1087	38	1	11524	1	TNXB	6	32052298	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	88739	32052298	139062769	15	40534											
CDKN1A	1026	broad.mit.edu;hgsc.bcm.edu	37	6	36652011	36652012	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	36652012	-	C	36652011	7	5	669	1	0	1	1	0	0	0	0	0	3160	1203	42	0	135	0	CDKN1A	6	36652011	Frame_Shift_Ins	INS	-	TCGA-KL-8331-01A-11D-2310-10	4599713	36652011	134463056	16	40535	524	2									
CDKN1A	1026	bcgsc.ca	37	6	36652012	36652013	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	36652013	-	C	36652012	7	5	669	1	0	1	1	0	0	0	0	0	3160	739	26	0	136	0	CDKN1A	6	36652012	Frame_Shift_Ins	INS	-	TCGA-KL-8331-01A-11D-2310-10	1	36652012	134463055	17	40536	524	2									
BCLAF1	9774	hgsc.bcm.edu	37	6	136596668	136596668	+	Splice_Site	SNP	A	A	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	136596668	A	C	136596668	5	2	669	1	0	0	0	0	0	0	1	0	1383	405	14	5	940	5	BCLAF1	6	136596668	Splice_Site	SNP	A	TCGA-KL-8331-01A-11D-2310-10	99944656	136596668	34518399	18	40537											
SLC29A4	222962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	5342510	5342510	+	Silent	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	5342510	C	T	5342510	2	4	669	1	0	0	0	0	0	0	0	1	14550	535	19	1		1	SLC29A4	7	5342510	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10		5342510	153796153	19	40538											
GRM3	2913	broad.mit.edu;mdanderson.org;bcgsc.ca	37	7	86479790	86479790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	86479790	G	T	86479790	3	4	669	1	0	0	0	0	1	0	0	0	6805	933	33	4	2510	4	GRM3	7	86479790	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	81137280	86479790	72658873	20	40539											
PON3	5446	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	95024006	95024006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	95024006	C	T	95024006	3	4	669	1	0	0	0	0	1	0	0	0	12257	884	31	1	1001	1	PON3	7	95024006	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	8544216	95024006	64114657	21	40540											
PTPRZ1	5803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	121699937	121699937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	121699937	G	T	121699937	3	4	669	1	0	0	0	0	1	0	0	0	12827	1290	45	4	6916	4	PTPRZ1	7	121699937	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	26675931	121699937	37438726	22	40541											
STRA8	346673	broad.mit.edu	37	7	134925328	134925328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	134925328	C	A	134925328	3	1	669	1	0	0	0	0	1	0	0	0	15335	796	28	4	124	4	STRA8	7	134925328	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	13225391	134925328	24213335	23	40542											
ABCF2	10061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	150921103	150921103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	150921103	G	T	150921103	3	4	669	1	0	0	0	0	1	0	0	0	66	1368	48	4	1495	4	ABCF2	7	150921103	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	15995775	150921103	8217560	24	40543											
RP1L1	94137	hgsc.bcm.edu;ucsc.edu	37	8	10467237	10467237	+	Silent	SNP	G	G	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	10467237	G	T	10467237	2	4	669	1	0	0	0	0	0	0	0	1	13546	1277	45	4		4	RP1L1	8	10467237	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10		10467237	135896785	25	40544											
KIF13B	23303	ucsc.edu	37	8	29035051	29035051	+	Silent	SNP	A	A	G	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	G	29035051	A	G	29035051	2	3	669	1	0	0	0	0	0	0	0	1	8282	175	7	3		3	KIF13B	8	29035051	Silent	SNP	A	TCGA-KL-8331-01A-11D-2310-10	18567814	29035051	117328971	26	40545											
TMC1	117531	ucsc.edu;mdanderson.org;bcgsc.ca	37	9	75309495	75309495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	75309495	G	A	75309495	3	1	669	1	0	0	0	0	1	0	0	0	15996	1058	37	1	111	1	TMC1	9	75309495	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10		75309495	65903936	27	40546											
CRB2	286204	ucsc.edu;bcgsc.ca	37	9	126137497	126137497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	126137497	T	C	126137497	3	2	669	1	0	0	0	0	1	0	0	0	3851	1710	59	3	3554	3	CRB2	9	126137497	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	50828002	126137497	15075934	28	40547											
MLLT10	8028	bcgsc.ca	37	10	21884308	21884308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	21884308	C	T	21884308	3	4	669	1	0	0	0	0	1	0	0	0	9633	739	26	2	358	2	MLLT10	10	21884308	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10		21884308	113650439	29	40548											
CHST3	9469	mdanderson.org	37	10	73767859	73767859	+	Missense_Mutation	SNP	G	G	A	rs3740129	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	73767859	G	A	73767859	3	1	669	1	0	0	0	0	1	0	0	0	3407	1116	39	1	1076	1	CHST3	10	73767859	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	51883551	73767859	61766888	30	40549											
MARCH5	54708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	94071001	94071001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	94071001	C	T	94071001	3	4	669	1	0	0	0	0	1	0	0	0	9311	536	19	1	151	1	MARCH5	10	94071001	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	20303142	94071001	41463746	31	40550											
DMBT1	1755	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	10	124399735	124399735	+	Silent	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	124399735	C	T	124399735	2	4	669	1	0	0	0	0	0	0	0	1	4579	871	31	1		1	DMBT1	10	124399735	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10	30328734	124399735	11135012	32	40551											
KCNQ1	3784	ucsc.edu	37	11	2797283	2797283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	G	2797283	A	G	2797283	3	3	669	1	0	0	0	0	1	0	0	0	8089	318	11	3	1743	3	KCNQ1	11	2797283	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10		2797283	132209233	33	40552											
CDC42BPG	55561	ucsc.edu	37	11	64601933	64601933	+	Silent	SNP	T	T	C	rs7933683	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	64601933	T	C	64601933	2	2	669	1	0	0	0	0	0	0	0	1	3076	1683	59	3		3	CDC42BPG	11	64601933	Silent	SNP	T	TCGA-KL-8331-01A-11D-2310-10	61804650	64601933	70404583	34	40553											
SLC6A13	6540	ucsc.edu	37	12	332318	332318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	G	332318	A	G	332318	3	3	669	1	0	0	0	0	1	0	0	0	14689	304	11	3	430	3	SLC6A13	12	332318	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10		332318	133519577	35	40554											
AICDA	57379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	8759502	8759502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	8759502	C	T	8759502	3	4	669	1	0	0	0	0	1	0	0	0	422	710	25	2	497	2	AICDA	12	8759502	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	8427184	8759502	125092393	36	40555											
TAS2R31	259290	bcgsc.ca	37	12	11183042	11183042	+	Missense_Mutation	SNP	C	C	G	rs3759246	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	G	11183042	C	G	11183042	3	3	669	1	0	0	0	0	1	0	0	0	15586	681	24	4	40	4	TAS2R31	12	11183042	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	2423540	11183042	122668853	37	40556											
TAS2R43	259289	mdanderson.org	37	12	11244369	11244369	+	Missense_Mutation	SNP	G	G	A	rs200586631	alternate_allele	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	11244369	G	A	11244369	3	1	669	1	0	0	0	0	1	0	0	0	15593	1086	38	1	473	1	TAS2R43	12	11244369	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	61327	11244369	122607526	38	40557											
TAS2R30	259293	broad.mit.edu	37	12	11286136	11286137	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	11286137	-	A	11286136	7	5	669	1	0	1	1	0	0	0	0	0	15585	465	17	0	255	0	TAS2R30	12	11286136	Frame_Shift_Ins	INS	-	TCGA-KL-8331-01A-11D-2310-10	41767	11286136	122565759	39	40558											
SOAT2	8435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	53517645	53517645	+	Silent	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	53517645	C	T	53517645	2	4	669	1	0	0	0	0	0	0	0	1	14924	747	26	2		2	SOAT2	12	53517645	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10	42231509	53517645	80334250	40	40559											
ATP8A2	51761	bcgsc.ca	37	13	26133897	26133897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	G	26133897	A	G	26133897	3	3	669	1	0	0	0	0	1	0	0	0	1193	275	10	3	1449	3	ATP8A2	13	26133897	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10		26133897	89035981	41	40560											
PAN3	255967	hgsc.bcm.edu;ucsc.edu	37	13	28840991	28840991	+	Silent	SNP	A	A	G	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	G	28840991	A	G	28840991	2	3	669	1	0	0	0	0	0	0	0	1	11422	204	8	3		3	PAN3	13	28840991	Silent	SNP	A	TCGA-KL-8331-01A-11D-2310-10	2707094	28840991	86328887	42	40561											
EAPP	55837	bcgsc.ca	37	14	34998579	34998579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	34998579	T	C	34998579	3	2	669	1	0	0	0	0	1	0	0	0	4879	1435	50	3	414	3	EAPP	14	34998579	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10		34998579	72350961	43	40562											
PSMC6	5706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	53175080	53175080	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	G	53175080	C	G	53175080	3	3	669	1	0	0	0	0	1	0	0	0	12701	912	32	4	187	4	PSMC6	14	53175080	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	18176501	53175080	54174460	44	40563											
EIF2AK4	440275	ucsc.edu	37	15	40268998	40268998	+	Missense_Mutation	SNP	G	G	C	rs200699205	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	40268998	G	C	40268998	3	2	669	1	0	0	0	0	1	0	0	0	5001	991	35	4	2248	4	EIF2AK4	15	40268998	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10		40268998	62262394	45	40564											
MEF2A	4205	mdanderson.org	37	15	100252741	100252741	+	Missense_Mutation	SNP	A	A	C	rs199811207		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	100252741	A	C	100252741	3	2	669	1	0	0	0	0	1	0	0	0	9462	188	7	5	1463	5	MEF2A	15	100252741	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10	59983743	100252741	2278651	46	40565											
TNRC6A	27327	broad.mit.edu	37	16	24817998	24817998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	24817998	T	C	24817998	3	2	669	1	0	0	0	0	1	0	0	0	16352	1551	54	3	4499	3	TNRC6A	16	24817998	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10		24817998	65536755	47	40566											
SETD1A	9739	hgsc.bcm.edu;ucsc.edu	37	16	30991933	30991933	+	Silent	SNP	C	C	T	rs56788559	bycluster;byfrequency;by1000genomes	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	30991933	C	T	30991933	2	4	669	1	0	0	0	0	0	0	0	1	14143	535	19	1		1	SETD1A	16	30991933	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10	6173935	30991933	59362820	48	40567											
NOB1	28987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	69786144	69786144	+	Silent	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	69786144	C	T	69786144	2	4	669	1	0	0	0	0	0	0	0	1	10518	695	24	2		2	NOB1	16	69786144	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10	38794211	69786144	20568609	49	40568											
CPNE7	27132	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	89650494	89650494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	89650494	G	A	89650494	3	1	669	1	0	0	0	0	1	0	0	0	3819	1000	35	2	738	2	CPNE7	16	89650494	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	19864350	89650494	704259	50	40569											
TRIM16	10626	ucsc.edu	37	17	15539560	15539560	+	Silent	SNP	C	C	T	rs9911397	bycluster;byfrequency;by1000genomes	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	15539560	C	T	15539560	2	4	669	1	0	0	0	0	0	0	0	1	16503	639	23	1		1	TRIM16	17	15539560	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10		15539560	65655650	51	40570											
AKAP10	11216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	19823386	19823386	+	Silent	SNP	T	T	C	rs1049591		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	19823386	T	C	19823386	2	2	669	1	0	0	0	0	0	0	0	1	446	1538	54	3		3	AKAP10	17	19823386	Silent	SNP	T	TCGA-KL-8331-01A-11D-2310-10	4283826	19823386	61371824	52	40571											
TRIM37	4591	ucsc.edu;bcgsc.ca	37	17	57153067	57153067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	57153067	T	C	57153067	3	2	669	1	0	0	0	0	1	0	0	0	16523	1667	58	3	2345	3	TRIM37	17	57153067	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	37329681	57153067	24042143	53	40572											
PTPRM	5797	ucsc.edu	37	18	8376084	8376084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	8376084	T	C	8376084	3	2	669	1	0	0	0	0	1	0	0	0	12819	1783	62	3	3310	3	PTPRM	18	8376084	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10		8376084	69701164	54	40573											
MAPK4	5596	ucsc.edu	37	18	48248403	48248403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	48248403	T	C	48248403	3	2	669	1	0	0	0	0	1	0	0	0	9287	1609	56	3	797	3	MAPK4	18	48248403	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	39872319	48248403	29828845	55	40574											
ZNF676	163223	mdanderson.org	37	19	22363631	22363631	+	Silent	SNP	G	G	A	rs75683199	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	22363631	G	A	22363631	2	1	669	1	0	0	0	0	0	0	0	1	18095	1277	45	2		2	ZNF676	19	22363631	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10		22363631	36765352	56	40575	525	2									
ZNF676	163223	mdanderson.org	37	19	22363634	22363634	+	Missense_Mutation	SNP	C	C	A	rs76456473	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	22363634	C	A	22363634	3	1	669	1	0	0	0	0	1	0	0	0	18095	796	28	4	885	4	ZNF676	19	22363634	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	3	22363634	36765349	57	40576	525	2									
IRGQ	126298	ucsc.edu	37	19	44099393	44099393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	C	44099393	T	C	44099393	3	2	669	1	0	0	0	0	1	0	0	0	7846	1551	54	3	1781	3	IRGQ	19	44099393	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	21735759	44099393	15029590	58	40577											
CD33	945	broad.mit.edu	37	19	51738423	51738423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	G	51738423	A	G	51738423	3	3	669	1	0	0	0	0	1	0	0	0	3007	275	10	3	775	3	CD33	19	51738423	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10	7639030	51738423	7390560	59	40578											
IGLON5	402665	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	51828628	51828628	+	Silent	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	51828628	G	A	51828628	2	1	669	1	0	0	0	0	0	0	0	1	7602	1074	38	1		1	IGLON5	19	51828628	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10	90205	51828628	7300355	60	40579											
CSNK2A1	1457	mdanderson.org	37	20	464702	464702	+	Missense_Mutation	SNP	G	G	A	rs61747403		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	464702	G	A	464702	3	1	669	1	0	0	0	0	1	0	0	0	3959	1261	44	2	100	2	CSNK2A1	20	464702	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10		464702	62560818	61	40580											
NCOA3	8202	broad.mit.edu;bcgsc.ca	37	20	46266522	46266522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	46266522	C	A	46266522	3	1	669	1	0	0	0	0	1	0	0	0	10237	913	32	4	2579	4	NCOA3	20	46266522	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	45801820	46266522	16758998	62	40581											
ZNF831	128611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	57768140	57768140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	57768140	C	T	57768140	3	4	669	1	0	0	0	0	1	0	0	0	18197	536	19	1	2068	1	ZNF831	20	57768140	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	11501618	57768140	5257380	63	40582											
GRIK1	2897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	21	30963507	30963507	+	Silent	SNP	C	C	T	rs144528849		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	30963507	C	T	30963507	2	4	669	1	0	0	0	0	0	0	0	1	6780	639	23	1		1	GRIK1	21	30963507	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10		30963507	17166388	64	40583											
ARSF	416	broad.mit.edu	37	X	2986145	2986145	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	-	2986145	A	-	2986145	7	5	669	1	0	1	0	1	0	0	0	0	991	295	11	0	6	0	ARSF	23	2986145	Frame_Shift_Del	DEL	A	TCGA-KL-8331-01A-11D-2310-10		2986145	152284415	65	40584											
USP9X	8239	broad.mit.edu	37	X	41029423	41029423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	41029423	G	A	41029423	3	1	669	1	0	0	0	0	1	0	0	0	17102	1116	39	1	2882	1	USP9X	23	41029423	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	38043278	41029423	114241137	66	40585											
PCDH19	57526	broad.mit.edu;mdanderson.org	37	X	99661925	99661925	+	Silent	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	99661925	G	A	99661925	2	1	669	1	0	0	0	0	0	0	0	1	11521	1136	40	1		1	PCDH19	23	99661925	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10	58632502	99661925	55608635	67	40586											
HS6ST2	90161	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	132091342	132091342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	132091342	C	A	132091342	3	1	669	1	0	0	0	0	1	0	0	0	7378	594	21	4	1512	4	HS6ST2	23	132091342	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	32429417	132091342	23179218	68	40587											
PASD1	139135	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	150817086	150817086	+	Splice_Site	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	150817086	G	A	150817086	5	1	669	1	0	0	0	0	0	0	1	0	11478	1043	36	2	659	2	PASD1	23	150817086	Splice_Site	SNP	G	TCGA-KL-8331-01A-11D-2310-10	18725744	150817086	4453474	69	40588											
MAGEA10	4109	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	151303811	151303811	+	Silent	SNP	G	G	A	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	A	151303811	G	A	151303811	2	1	669	1	0	0	0	0	0	0	0	1	9171	987	35	2		2	MAGEA10	23	151303811	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10	486725	151303811	3966749	70	40589											
ZNF185	7739	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	152091354	152091354	+	Splice_Site	SNP	G	G	T	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800	T	152091354	G	T	152091354	5	4	669	1	0	0	0	0	0	0	1	0	17764	1275	44	4	888	4	ZNF185	23	152091354	Splice_Site	SNP	G	TCGA-KL-8331-01A-11D-2310-10	787543	152091354	3179206	71	40590											
AGRN	375790	broad.mit.edu	37	1	983491	983493	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	-	983493	TGA	-	983491	7	5	670	1	0	1	0	1	0	0	0	0	397	1696	59	0	3941	0	AGRN	1	983491	In_Frame_Del	DEL	TGA	TCGA-KL-8332-01A-11D-2310-10		983491	248267130	1	40591											
TMEM201	199953	ucsc.edu	37	1	9661448	9661448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	9661448	A	G	9661448	3	3	670	1	0	0	0	0	1	0	0	0	16138	275	10	3	910	3	TMEM201	1	9661448	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	8677957	9661448	239589173	2	40592											
HSPG2	3339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	22176895	22176895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	22176895	A	T	22176895	3	4	670	1	0	0	0	0	1	0	0	0	7437	304	11	5	6088	5	HSPG2	1	22176895	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	12515447	22176895	227073726	3	40593											
SLC9A1	6548	bcgsc.ca	37	1	27436145	27436146	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	27436146	-	A	27436145	7	5	670	1	0	1	1	0	0	0	0	0	14722	652	23	0	1550	0	SLC9A1	1	27436145	Frame_Shift_Ins	INS	-	TCGA-KL-8332-01A-11D-2310-10	5259250	27436145	221814476	4	40594											
SPOCD1	90853	ucsc.edu;bcgsc.ca	37	1	32280705	32280705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	C	32280705	T	C	32280705	3	2	670	1	0	0	0	0	1	0	0	0	15090	1551	54	3	3480	3	SPOCD1	1	32280705	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	4844560	32280705	216969916	5	40595											
GJB3	2707	broad.mit.edu	37	1	35250386	35250386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	35250386	C	A	35250386	3	1	670	1	0	0	0	0	1	0	0	0	6416	739	26	4	25	4	GJB3	1	35250386	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	2969681	35250386	214000235	6	40596											
DOCK7	85440	hgsc.bcm.edu;bcgsc.ca	37	1	63005305	63005305	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	63005305	T	A	63005305	3	1	670	1	0	0	0	0	1	0	0	0	4694	1812	63	5	3307	5	DOCK7	1	63005305	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	27754919	63005305	186245316	7	40597											
FAM73A	374986	ucsc.edu	37	1	78269049	78269049	+	Silent	SNP	A	A	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	78269049	A	G	78269049	2	3	670	1	0	0	0	0	0	0	0	1	5624	262	10	3		3	FAM73A	1	78269049	Silent	SNP	A	TCGA-KL-8332-01A-11D-2310-10	15263744	78269049	170981572	8	40598											
PTGFRN	5738	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	117491967	117491967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	117491967	G	A	117491967	3	1	670	1	0	0	0	0	1	0	0	0	12761	1087	38	1	1000	1	PTGFRN	1	117491967	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	39222918	117491967	131758654	9	40599											
BCAN	63827	broad.mit.edu	37	1	156622489	156622489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	156622489	G	A	156622489	3	1	670	1	0	0	0	0	1	0	0	0	1345	1059	37	1	1773	1	BCAN	1	156622489	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	39130522	156622489	92628132	10	40600											
FAM82A1	151393	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	38224599	38224599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	38224599	C	T	38224599	3	4	670	1	0	0	0	0	1	0	0	0	5637	565	20	2	2006	2	FAM82A1	2	38224599	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10		38224599	204974774	11	40601											
AAK1	22848	ucsc.edu	37	2	69732801	69732801	+	Silent	SNP	T	T	C	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	C	69732801	T	C	69732801	2	2	670	1	0	0	0	0	0	0	0	1	16	1722	60	3		3	AAK1	2	69732801	Silent	SNP	T	TCGA-KL-8332-01A-11D-2310-10	31508202	69732801	173466572	12	40602											
RPIA	22934	ucsc.edu	37	2	88991370	88991370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	88991370	C	T	88991370	3	4	670	1	0	0	0	0	1	0	0	0	13566	652	23	1	156	1	RPIA	2	88991370	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	19258569	88991370	154208003	13	40603											
FAM168B	130074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	131813240	131813240	+	Silent	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	131813240	C	T	131813240	2	4	670	1	0	0	0	0	0	0	0	1	5490	465	17	2		2	FAM168B	2	131813240	Silent	SNP	C	TCGA-KL-8332-01A-11D-2310-10	42821870	131813240	111386133	14	40604											
PLA2R1	22925	broad.mit.edu	37	2	160807853	160807853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	160807853	C	T	160807853	3	4	670	1	0	0	0	0	1	0	0	0	12017	913	32	2	889	2	PLA2R1	2	160807853	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	28994613	160807853	82391520	15	40605											
PECR	55825	broad.mit.edu;bcgsc.ca	37	2	216946400	216946400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	C	216946400	A	C	216946400	3	2	670	1	0	0	0	0	1	0	0	0	11724	333	12	5	878	5	PECR	2	216946400	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	56138547	216946400	26252973	16	40606											
CAV3	859	broad.mit.edu	37	3	8775578	8775578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	8775578	C	T	8775578	3	4	670	1	0	0	0	0	1	0	0	0	2697	710	25	2	18	2	CAV3	3	8775578	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10		8775578	189246852	17	40607											
GOLGA4	2803	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	37360554	37360554	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	37360554	A	T	37360554	4	4	670	1	0	0	0	0	0	1	0	0	6562	260	9	5	1530	5	GOLGA4	3	37360554	Nonsense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	28584976	37360554	160661876	18	40608											
UROC1	131669	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	126220079	126220079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	126220079	C	T	126220079	3	4	670	1	0	0	0	0	1	0	0	0	17040	739	26	2	1127	2	UROC1	3	126220079	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	88859525	126220079	71802351	19	40609											
LARP7	51574	hgsc.bcm.edu	37	4	113565882	113565883	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	113565883	-	A	113565882	7	5	670	1	0	1	1	0	0	0	0	0	8640	933	33	0	59	0	LARP7	4	113565882	Frame_Shift_Ins	INS	-	TCGA-KL-8332-01A-11D-2310-10		113565882	77588394	20	40610	526	2									
LARP7	51574	bcgsc.ca	37	4	113565883	113565884	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	113565884	-	A	113565883	7	5	670	1	0	1	1	0	0	0	0	0	8640	247	9	0	60	0	LARP7	4	113565883	Frame_Shift_Ins	INS	-	TCGA-KL-8332-01A-11D-2310-10	1	113565883	77588393	21	40611	526	2									
FGA	2243	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	155506759	155506759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	155506759	C	T	155506759	3	4	670	1	0	0	0	0	1	0	0	0	5837	661	23	1	830	1	FGA	4	155506759	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	41940876	155506759	35647517	22	40612											
ADAM29	11086	mdanderson.org	37	4	175899001	175899001	+	Silent	SNP	T	T	C	rs111240604	byfrequency	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	C	175899001	T	C	175899001	2	2	670	1	0	0	0	0	0	0	0	1	247	1538	54	3		3	ADAM29	4	175899001	Silent	SNP	T	TCGA-KL-8332-01A-11D-2310-10	20392242	175899001	15255275	23	40613											
SDHA	6389	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	256467	256467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	256467	C	G	256467	3	3	670	1	0	0	0	0	1	0	0	0	13976	507	18	4	1985	4	SDHA	5	256467	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10		256467	180658793	24	40614											
SLC6A19	340024	bcgsc.ca	37	5	1208864	1208864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	1208864	C	T	1208864	3	4	670	1	0	0	0	0	1	0	0	0	14695	739	26	2	212	2	SLC6A19	5	1208864	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	952397	1208864	179706396	25	40615											
VARS2	57176	broad.mit.edu	37	6	30889464	30889464	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	C	30889464	G	C	30889464	3	2	670	1	0	0	0	0	1	0	0	0	17136	933	33	4	1891	4	VARS2	6	30889464	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10		30889464	140225603	26	40616											
MUC21	394263	mdanderson.org	37	6	30954932	30954932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	30954932	C	T	30954932	3	4	670	1	0	0	0	0	1	0	0	0	9984	739	26	2	986	2	MUC21	6	30954932	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	65468	30954932	140160135	27	40617											
HLA-DRB1	3123	mdanderson.org	37	6	32551996	32551996	+	Missense_Mutation	SNP	G	G	T	rs1059584	byfrequency	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	32551996	G	T	32551996	3	4	670	1	0	0	0	0	1	0	0	0	7215	971	34	4	560	4	HLA-DRB1	6	32551996	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	1597064	32551996	138563071	28	40618											
KIAA0408	9729	bcgsc.ca	37	6	127771252	127771253	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	127771253	-	T	127771252	7	5	670	1	0	1	1	0	0	0	0	0	8181	1490	52	0	1719	0	KIAA0408	6	127771252	Frame_Shift_Ins	INS	-	TCGA-KL-8332-01A-11D-2310-10	95219256	127771252	43343815	29	40619											
DLX6	1750	broad.mit.edu	37	7	96635389	96635391	+	In_Frame_Del	DEL	CAG	CAG	-	rs5885995	alternate_allele	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	-	96635391	CAG	-	96635389	7	5	670	1	0	1	0	1	0	0	0	0	4577	479	17	0	102	0	DLX6	7	96635389	In_Frame_Del	DEL	CAG	TCGA-KL-8332-01A-11D-2310-10		96635389	62503274	30	40620											
MLL3	58508	mdanderson.org	37	7	151932923	151932923	+	Silent	SNP	G	G	A	rs2740237	bycluster;by2hit2allele;byhapmap	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	151932923	G	A	151932923	2	1	670	1	0	0	0	0	0	0	0	1	9629	1048	37	1		1	MLL3	7	151932923	Silent	SNP	G	TCGA-KL-8332-01A-11D-2310-10	55297534	151932923	7205740	31	40621											
PTPDC1	138639	ucsc.edu	37	9	96857597	96857597	+	Splice_Site	SNP	A	A	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	96857597	A	G	96857597	5	3	670	1	0	0	0	0	0	0	1	0	12784	434	15	3	713	3	PTPDC1	9	96857597	Splice_Site	SNP	A	TCGA-KL-8332-01A-11D-2310-10		96857597	44355834	32	40622											
FAS	355	bcgsc.ca	37	10	90774008	90774008	+	Missense_Mutation	SNP	C	C	T	rs121913081		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	90774008	C	T	90774008	3	4	670	1	0	0	0	0	1	0	0	0	5688	478	17	2	843	2	FAS	10	90774008	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10		90774008	44760739	33	40623											
CEND1	51286	ucsc.edu	37	11	788570	788570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	788570	A	G	788570	3	3	670	1	0	0	0	0	1	0	0	0	3227	275	10	3	446	3	CEND1	11	788570	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10		788570	134217946	34	40624											
MUC2	4583	mdanderson.org	37	11	1092973	1092973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	1092973	C	T	1092973	3	4	670	1	0	0	0	0	1	0	0	0	9982	507	18	2	4910	2	MUC2	11	1092973	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	304403	1092973	133913543	35	40625											
MICALCL	84953	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	12316009	12316009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	12316009	G	A	12316009	3	1	670	1	0	0	0	0	1	0	0	0	9579	1087	38	1	1037	1	MICALCL	11	12316009	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	11223036	12316009	122690507	36	40626											
SLC1A2	6506	ucsc.edu	37	11	35338967	35338967	+	Silent	SNP	A	A	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	35338967	A	G	35338967	2	3	670	1	0	0	0	0	0	0	0	1	14445	157	6	3		3	SLC1A2	11	35338967	Silent	SNP	A	TCGA-KL-8332-01A-11D-2310-10	23022958	35338967	99667549	37	40627											
FOLH1	2346	mdanderson.org	37	11	49204732	49204732	+	Missense_Mutation	SNP	T	T	C	rs199782232		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	C	49204732	T	C	49204732	3	2	670	1	0	0	0	0	1	0	0	0	5986	1493	52	3	1415	3	FOLH1	11	49204732	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	13865765	49204732	85801784	38	40628											
OR5M3	219482	broad.mit.edu	37	11	56237919	56237919	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	56237919	G	A	56237919	4	1	670	1	0	0	0	0	0	1	0	0	11182	1066	37	1	870	1	OR5M3	11	56237919	Nonsense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	7033187	56237919	78768597	39	40629											
FAT3	120114	broad.mit.edu	37	11	92531376	92531376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	T	92531376	C	T	92531376	3	4	670	1	0	0	0	0	1	0	0	0	5698	768	27	1	5231	1	FAT3	11	92531376	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	36293457	92531376	42475140	40	40630											
LPAR5	57121	broad.mit.edu	37	12	6729661	6729663	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	-	6729663	TGT	-	6729661	7	5	670	1	0	1	0	1	0	0	0	0	8915	1580	55	0	368	0	LPAR5	12	6729661	In_Frame_Del	DEL	TGT	TCGA-KL-8332-01A-11D-2310-10		6729661	127122234	41	40631											
HDAC7	51564	broad.mit.edu;hgsc.bcm.edu	37	12	48189416	48189416	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	-	48189416	G	-	48189416	7	5	670	1	0	1	0	1	0	0	0	0	7019	1335	47	0	2002	0	HDAC7	12	48189416	Frame_Shift_Del	DEL	G	TCGA-KL-8332-01A-11D-2310-10	41459755	48189416	85662479	42	40632	527	2									
HDAC7	51564	bcgsc.ca	37	12	48189417	48189417	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	-	48189417	G	-	48189417	7	5	670	1	0	1	0	1	0	0	0	0	7019	1232	43	0	2003	0	HDAC7	12	48189417	Frame_Shift_Del	DEL	G	TCGA-KL-8332-01A-11D-2310-10	1	48189417	85662478	43	40633	527	2									
TENC1	23371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	53449591	53449591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	53449591	C	G	53449591	3	3	670	1	0	0	0	0	1	0	0	0	15770	874	31	4	870	4	TENC1	12	53449591	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	5260174	53449591	80402304	44	40634											
TUBA3C	7278	broad.mit.edu	37	13	19751676	19751676	+	Silent	SNP	G	G	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	19751676	G	A	19751676	2	1	670	1	0	0	0	0	0	0	0	1	16758	1049	37	1		1	TUBA3C	13	19751676	Silent	SNP	G	TCGA-KL-8332-01A-11D-2310-10		19751676	95418202	45	40635											
EBPL	84650	broad.mit.edu	37	13	50235138	50235138	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	50235138	T	G	50235138	3	3	670	1	0	0	0	0	1	0	0	0	4889	1580	55	5	37	5	EBPL	13	50235138	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	30483462	50235138	64934740	46	40636											
OR11H12	440153	mdanderson.org	37	14	19378135	19378135	+	Missense_Mutation	SNP	T	T	A	rs71233802		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	19378135	T	A	19378135	3	1	670	1	0	0	0	0	1	0	0	0	10934	1464	51	5	544	5	OR11H12	14	19378135	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10		19378135	87971405	47	40637											
DHRS4L2	317749	mdanderson.org	37	14	24464310	24464310	+	Missense_Mutation	SNP	C	C	A	rs61999853	byfrequency	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	24464310	C	A	24464310	3	1	670	1	0	0	0	0	1	0	0	0	4496	680	24	4	386	4	DHRS4L2	14	24464310	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	5086175	24464310	82885230	48	40638											
DCAF4	26094	ucsc.edu	37	14	73425508	73425508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	73425508	A	G	73425508	3	3	670	1	0	0	0	0	1	0	0	0	4272	188	7	3	1536	3	DCAF4	14	73425508	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	48961198	73425508	33924032	49	40639											
RBBP6	5930	broad.mit.edu;hgsc.bcm.edu	37	16	24582960	24582960	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	-	24582960	G	-	24582960	7	5	670	1	0	1	0	1	0	0	0	0	13116	1001	35	0	4697	0	RBBP6	16	24582960	Frame_Shift_Del	DEL	G	TCGA-KL-8332-01A-11D-2310-10		24582960	65771793	50	40640	528	2									
RBBP6	5930	bcgsc.ca	37	16	24582961	24582961	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	-	24582961	G	-	24582961	7	5	670	1	0	1	0	1	0	0	0	0	13116	1174	41	0	4698	0	RBBP6	16	24582961	Frame_Shift_Del	DEL	G	TCGA-KL-8332-01A-11D-2310-10	1	24582961	65771792	51	40641	528	2									
ADCY7	113	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	16	50348998	50348998	+	Silent	SNP	T	T	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	50348998	T	A	50348998	2	1	670	1	0	0	0	0	0	0	0	1	299	1567	55	5		5	ADCY7	16	50348998	Silent	SNP	T	TCGA-KL-8332-01A-11D-2310-10	25766037	50348998	40005755	52	40642											
TSR1	55720	broad.mit.edu	37	17	2228035	2228035	+	Silent	SNP	A	A	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	2228035	A	G	2228035	2	3	670	1	0	0	0	0	0	0	0	1	16676	59	3	3		3	TSR1	17	2228035	Silent	SNP	A	TCGA-KL-8332-01A-11D-2310-10		2228035	78967175	53	40643											
FAM20A	54757	ucsc.edu	37	17	66538262	66538262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	C	66538262	T	C	66538262	3	2	670	1	0	0	0	0	1	0	0	0	5541	1667	58	3	672	3	FAM20A	17	66538262	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	64310227	66538262	14656948	54	40644											
TMEM104	54868	ucsc.edu	37	17	72787131	72787131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	G	72787131	A	G	72787131	3	3	670	1	0	0	0	0	1	0	0	0	16030	275	10	3	401	3	TMEM104	17	72787131	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	6248869	72787131	8408079	55	40645											
TCEB3C	162699	bcgsc.ca	37	18	44555274	44555274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	44555274	G	A	44555274	3	1	670	1	0	0	0	0	1	0	0	0	15695	1145	40	1	2347	1	TCEB3C	18	44555274	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10		44555274	33521974	56	40646											
PLIN4	729359	mdanderson.org	37	19	4511494	4511494	+	Silent	SNP	G	G	A	rs201001883		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	4511494	G	A	4511494	2	1	670	1	0	0	0	0	0	0	0	1	12099	1103	39	1		1	PLIN4	19	4511494	Silent	SNP	G	TCGA-KL-8332-01A-11D-2310-10		4511494	54617489	57	40647											
PLCB1	23236	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	8770880	8770880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	8770880	G	A	8770880	3	1	670	1	0	0	0	0	1	0	0	0	12034	1145	40	1	3517	1	PLCB1	20	8770880	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10		8770880	54254640	58	40648											
COL20A1	57642	ucsc.edu	37	20	61950862	61950862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	C	61950862	T	C	61950862	3	2	670	1	0	0	0	0	1	0	0	0	3681	1609	56	3	2916	3	COL20A1	20	61950862	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	53179982	61950862	1074658	59	40649											
BRWD1	54014	bcgsc.ca	37	21	40649185	40649185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	C	40649185	T	C	40649185	3	2	670	1	0	0	0	0	1	0	0	0	1527	1609	56	3	6233	3	BRWD1	21	40649185	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10		40649185	7480710	60	40650											
RPGR	6103	broad.mit.edu	37	X	38145423	38145423	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	-	38145423	A	-	38145423	7	5	670	1	0	1	0	1	0	0	0	0	13561	214	8	0	1192	0	RPGR	23	38145423	Frame_Shift_Del	DEL	A	TCGA-KL-8332-01A-11D-2310-10		38145423	117125137	61	40651											
MAGEC1	9947	broad.mit.edu	37	X	140994357	140994357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	140994357	C	A	140994357	3	1	670	1	0	0	0	0	1	0	0	0	9187	854	30	4	1173	4	MAGEC1	23	140994357	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	102848934	140994357	14276203	62	40652											
PNMA5	114824	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	152159197	152159197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e	A	152159197	G	A	152159197	3	1	670	1	0	0	0	0	1	0	0	0	12163	1174	41	2	404	2	PNMA5	23	152159197	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	11164840	152159197	3111363	63	40653											
AK2	204	mdanderson.org	37	1	33478931	33478931	+	Missense_Mutation	SNP	G	G	C	rs80324279		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	33478931	G	C	33478931	3	2	671	1	0	0	0	0	1	0	0	0	440	1348	47	4	161	4	AK2	1	33478931	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10		33478931	215771690	1	40654			1	93		2	2	53	G		9.910112e-05
AK2	204	mdanderson.org	37	1	33478983	33478983	+	Silent	SNP	G	G	A	rs79403800		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	33478983	G	A	33478983	2	1	671	1	0	0	0	0	0	0	0	1	440	1164	41	2		2	AK2	1	33478983	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	52	33478983	215771638	2	40655			1	93		2	2	53	G		9.910112e-05
MAP7D1	55700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	36643614	36643614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	36643614	G	A	36643614	3	1	671	1	0	0	0	0	1	0	0	0	9274	1116	39	1	1554	1	MAP7D1	1	36643614	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10	3164631	36643614	212607007	3	40656											
MYBPHL	343263	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	1	109840181	109840181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	109840181	C	T	109840181	3	4	671	1	0	0	0	0	1	0	0	0	10022	536	19	1	795	1	MYBPHL	1	109840181	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	73196567	109840181	139410440	4	40657											
USP21	27005	broad.mit.edu	37	1	161132827	161132827	+	Missense_Mutation	SNP	C	C	T	rs148729808	byfrequency	TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	161132827	C	T	161132827	3	4	671	1	0	0	0	0	1	0	0	0	17065	652	23	1	1030	1	USP21	1	161132827	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	51292646	161132827	88117794	5	40658											
OR2M2	391194	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	248343636	248343636	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	248343636	G	C	248343636	3	2	671	1	0	0	0	0	1	0	0	0	11017	1377	48	4	351	4	OR2M2	1	248343636	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10	87210809	248343636	906985	6	40659											
OR2M2	391194	broad.mit.edu;mdanderson.org	37	1	248343935	248343935	+	Silent	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	248343935	T	C	248343935	2	2	671	1	0	0	0	0	0	0	0	1	11017	1596	56	3		3	OR2M2	1	248343935	Silent	SNP	T	TCGA-KL-8333-01A-11D-2310-10	299	248343935	906686	7	40660											
TRIM43	129868	mdanderson.org	37	2	96260889	96260889	+	Missense_Mutation	SNP	G	G	T	rs199714127		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	96260889	G	T	96260889	3	4	671	1	0	0	0	0	1	0	0	0	16530	1357	47	4	509	4	TRIM43	2	96260889	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10		96260889	146938484	8	40661											
ABCB11	8647	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	2	169842725	169842725	+	Silent	SNP	A	A	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	169842725	A	C	169842725	2	2	671	1	0	0	0	0	0	0	0	1	42	175	7	5		5	ABCB11	2	169842725	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10	73581836	169842725	73356648	9	40662											
PARD3B	117583	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	2	206037069	206037069	+	Silent	SNP	G	G	A	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	206037069	G	A	206037069	2	1	671	1	0	0	0	0	0	0	0	1	11451	1020	36	2		2	PARD3B	2	206037069	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	36194344	206037069	37162304	10	40663											
GBX2	2637	broad.mit.edu;bcgsc.ca	37	2	237074936	237074936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	237074936	T	C	237074936	3	2	671	1	0	0	0	0	1	0	0	0	6288	1667	58	3	382	3	GBX2	2	237074936	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	31037867	237074936	6124437	11	40664											
RBM15B	29890	ucsc.edu;bcgsc.ca	37	3	51429336	51429336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	51429336	T	C	51429336	3	2	671	1	0	0	0	0	1	0	0	0	13130	1435	50	3	508	3	RBM15B	3	51429336	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		51429336	146593094	12	40665											
MCF2L2	23101	hgsc.bcm.edu	37	3	183145747	183145747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	183145747	C	T	183145747	3	4	671	1	0	0	0	0	1	0	0	0	9387	922	32	2	3445	2	MCF2L2	3	183145747	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	131716411	183145747	14876683	13	40666											
MUC4	4585	mdanderson.org	37	3	195507529	195507529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	195507529	A	G	195507529	3	3	671	1	0	0	0	0	1	0	0	0	9985	391	14	3		3	MUC4	3	195507529	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10	12361782	195507529	2514901	14	40667											
MUC4	4585	mdanderson.org	37	3	195510910	195510910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	195510910	G	T	195510910	3	4	671	1	0	0	0	0	1	0	0	0	9985	1000	35	4		4	MUC4	3	195510910	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10	3381	195510910	2511520	15	40668											
LETM1	3954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	4	1821161	1821162	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	AG	1821162	GC	AG	1821161	3	1	671	1	0	0	0	0	1	0	0	0	8741	1078	38	1	588	1	LETM1	4	1821161	Missense_Mutation	DNP	GC	TCGA-KL-8333-01A-11D-2310-10		1821161	189333115	16	40669	529	2									
LETM1	3954	bcgsc.ca	37	4	1821162	1821162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	1821162	C	G	1821162	3	3	671	1	0	0	0	0	1	0	0	0	8741	797	28	4	589	4	LETM1	4	1821162	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	1	1821162	189333114	17	40670	529	2									
OTOP1	133060	broad.mit.edu	37	4	4228459	4228459	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	-	4228459	G	-	4228459	7	5	671	1	0	1	0	1	0	0	0	0	11312	1115	39	0	1729	0	OTOP1	4	4228459	Frame_Shift_Del	DEL	G	TCGA-KL-8333-01A-11D-2310-10	2407297	4228459	186925817	18	40671											
PDE8B	8622	broad.mit.edu	37	5	76714238	76714238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	76714238	A	G	76714238	3	3	671	1	0	0	0	0	1	0	0	0	11661	275	10	3	2166	3	PDE8B	5	76714238	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10		76714238	104201022	19	40672											
NHP2	55651	broad.mit.edu	37	5	177580963	177580963	+	Splice_Site	SNP	G	G	A	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	177580963	G	A	177580963	5	1	671	1	0	0	0	0	0	0	1	0	10416	1160	40	1		1	NHP2	5	177580963	Splice_Site	SNP	G	TCGA-KL-8333-01A-11D-2310-10	100866725	177580963	3334297	20	40673											
TFAP2A	7020	ucsc.edu	37	6	10410153	10410153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	10410153	T	C	10410153	3	2	671	1	0	0	0	0	1	0	0	0	15799	1696	59	3	876	3	TFAP2A	6	10410153	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		10410153	160704914	21	40674											
GMPR	2766	ucsc.edu	37	6	16247121	16247121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	16247121	T	C	16247121	3	2	671	1	0	0	0	0	1	0	0	0	6503	1551	54	3	142	3	GMPR	6	16247121	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	5836968	16247121	154867946	22	40675											
LRRC1	55227	ucsc.edu	37	6	53660086	53660086	+	Missense_Mutation	SNP	A	A	G	rs201594887		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	53660086	A	G	53660086	3	3	671	1	0	0	0	0	1	0	0	0	8973	43	2	3	34	3	LRRC1	6	53660086	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10	37412965	53660086	117454981	23	40676											
KIAA1009	22832	broad.mit.edu	37	6	84884491	84884491	+	Silent	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	84884491	T	C	84884491	2	2	671	1	0	0	0	0	0	0	0	1	8210	1606	56	3		3	KIAA1009	6	84884491	Silent	SNP	T	TCGA-KL-8333-01A-11D-2310-10	31224405	84884491	86230576	24	40677											
TAGAP	117289	ucsc.edu	37	6	159456931	159456931	+	Silent	SNP	A	A	G	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	159456931	A	G	159456931	2	3	671	1	0	0	0	0	0	0	0	1	15549	273	10	3		3	TAGAP	6	159456931	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10	74572440	159456931	11658136	25	40678											
STK31	56164	broad.mit.edu	37	7	23825129	23825129	+	Silent	SNP	A	A	G	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	23825129	A	G	23825129	2	3	671	1	0	0	0	0	0	0	0	1	15308	40	2	3		3	STK31	7	23825129	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10		23825129	135313534	26	40679											
LIMK1	3984	broad.mit.edu	37	7	73535525	73535526	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	73535526	-	C	73535525	7	5	671	1	0	1	1	0	0	0	0	0	8808	1203	42	0	1900	0	LIMK1	7	73535525	Frame_Shift_Ins	INS	-	TCGA-KL-8333-01A-11D-2310-10	49710396	73535525	85603138	27	40680											
MLL3	58508	bcgsc.ca	37	7	151962265	151962265	+	Missense_Mutation	SNP	C	C	T	rs201834857		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	151962265	C	T	151962265	3	4	671	1	0	0	0	0	1	0	0	0	9629	884	31	1	13901	1	MLL3	7	151962265	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	78426740	151962265	7176398	28	40681											
PHYHIP	9796	broad.mit.edu	37	8	22079280	22079280	+	Silent	SNP	G	G	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	22079280	G	T	22079280	2	4	671	1	0	0	0	0	0	0	0	1	11873	1190	42	4		4	PHYHIP	8	22079280	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10		22079280	124284742	29	40682											
ABRA	137735	broad.mit.edu	37	8	107773293	107773293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	107773293	T	C	107773293	3	2	671	1	0	0	0	0	1	0	0	0	100	1667	58	3	31	3	ABRA	8	107773293	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	85694013	107773293	38590729	30	40683											
FER1L6	654463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	125074107	125074107	+	Silent	SNP	C	C	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	125074107	C	T	125074107	2	4	671	1	0	0	0	0	0	0	0	1	5822	535	19	1		1	FER1L6	8	125074107	Silent	SNP	C	TCGA-KL-8333-01A-11D-2310-10	17300814	125074107	21289915	31	40684											
NUP214	8021	bcgsc.ca	37	9	134074387	134074387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	134074387	T	C	134074387	3	2	671	1	0	0	0	0	1	0	0	0	10769	1609	56	3	5620	3	NUP214	9	134074387	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		134074387	7139044	32	40685											
SH3PXD2A	9644	mdanderson.org;bcgsc.ca	37	10	105362429	105362429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	105362429	C	T	105362429	3	4	671	1	0	0	0	0	1	0	0	0	14269	797	28	2	859	2	SH3PXD2A	10	105362429	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		105362429	30172318	33	40686											
PRKCDBP	112464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	6341681	6341681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	6341681	C	T	6341681	3	4	671	1	0	0	0	0	1	0	0	0	12520	623	22	2	767	2	PRKCDBP	11	6341681	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		6341681	128664835	34	40687											
CAPN5	726	broad.mit.edu	37	11	76804733	76804733	+	Silent	SNP	C	C	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	76804733	C	T	76804733	2	4	671	1	0	0	0	0	0	0	0	1	2631	903	32	2		2	CAPN5	11	76804733	Silent	SNP	C	TCGA-KL-8333-01A-11D-2310-10	70463052	76804733	58201783	35	40688											
MRE11A	4361	bcgsc.ca	37	11	94211961	94211961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	94211961	T	C	94211961	3	2	671	1	0	0	0	0	1	0	0	0	9766	1435	50	3	1702	3	MRE11A	11	94211961	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	17407228	94211961	40794555	36	40689											
ADAMTS15	170689	bcgsc.ca	37	11	130332482	130332501	+	Frame_Shift_Del	DEL	CTGGCTTTTGGCGTGGGCTC	CTGGCTTTTGGCGTGGGCTC	-	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	CTGGCTTTTGGCGTGGGCTC	CTGGCTTTTGGCGTGGGCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	-	130332501	CTGGCTTTTGGCGTGGGCTC	-	130332482	7	5	671	1	0	1	0	1	0	0	0	0	260	1580	55	0	1363	0	ADAMTS15	11	130332482	Frame_Shift_Del	DEL	CTGGCTTTTGGCGTGGGCTC	TCGA-KL-8333-01A-11D-2310-10	36120521	130332482	4674034	37	40690											
PRB2	653247	mdanderson.org	37	12	11546616	11546616	+	Silent	SNP	A	A	G	rs199923047		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	11546616	A	G	11546616	2	3	671	1	0	0	0	0	0	0	0	1	12453	291	11	3		3	PRB2	12	11546616	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10		11546616	122305279	38	40691											
PPFIA2	8499	ucsc.edu	37	12	81719630	81719630	+	Silent	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	81719630	T	C	81719630	2	2	671	1	0	0	0	0	0	0	0	1	12317	1606	56	3		3	PPFIA2	12	81719630	Silent	SNP	T	TCGA-KL-8333-01A-11D-2310-10	70173014	81719630	52132265	39	40692											
RILPL1	353116	broad.mit.edu	37	12	123957223	123957223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	123957223	G	T	123957223	3	4	671	1	0	0	0	0	1	0	0	0	13374	962	34	4	141	4	RILPL1	12	123957223	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10	42237593	123957223	9894672	40	40693											
TPTE2	93492	mdanderson.org	37	13	20000609	20000609	+	Missense_Mutation	SNP	C	C	T	rs141691551		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	20000609	C	T	20000609	3	4	671	1	0	0	0	0	1	0	0	0	16443	652	23	1	229	1	TPTE2	13	20000609	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		20000609	95169269	41	40694											
ZMYM5	9205	broad.mit.edu	37	13	20426257	20426257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	20426257	T	C	20426257	3	2	671	1	0	0	0	0	1	0	0	0	17715	1406	49	3	2080	3	ZMYM5	13	20426257	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	425648	20426257	94743621	42	40695											
KCNK10	54207	broad.mit.edu	37	14	88652217	88652217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	88652217	C	T	88652217	3	4	671	1	0	0	0	0	1	0	0	0	8066	623	22	2	341	2	KCNK10	14	88652217	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		88652217	18697323	43	40696											
DYX1C1	161582	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	15	55731737	55731737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	55731737	C	A	55731737	3	1	671	1	0	0	0	0	1	0	0	0	4864	826	29	4	555	4	DYX1C1	15	55731737	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		55731737	46799655	44	40697											
ACSM5	54988	bcgsc.ca	37	16	20430733	20430733	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	20430733	G	A	20430733	4	1	671	1	0	0	0	0	0	1	0	0	187	1357	47	2	609	2	ACSM5	16	20430733	Nonsense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10		20430733	69924020	45	40698											
RRAD	6236	ucsc.edu	37	16	66958810	66958810	+	Silent	SNP	A	A	G	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	66958810	A	G	66958810	2	3	671	1	0	0	0	0	0	0	0	1	13684	1	1	3		3	RRAD	16	66958810	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10	46528077	66958810	23395943	46	40699											
CPNE7	27132	broad.mit.edu;bcgsc.ca	37	16	89649860	89649860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	89649860	A	G	89649860	3	3	671	1	0	0	0	0	1	0	0	0	3819	275	10	3	520	3	CPNE7	16	89649860	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10	22691050	89649860	704893	47	40700											
FBXW10	10517	mdanderson.org	37	17	18682163	18682163	+	Missense_Mutation	SNP	T	T	C	rs199779085	byfrequency	TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	18682163	T	C	18682163	3	2	671	1	0	0	0	0	1	0	0	0	5770	1667	58	3	2762	3	FBXW10	17	18682163	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		18682163	62513047	48	40701											
RNF43	54894	hgsc.bcm.edu;ucsc.edu	37	17	56448329	56448329	+	Silent	SNP	G	G	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	56448329	G	T	56448329	2	4	671	1	0	0	0	0	0	0	0	1	13508	1048	37	4		4	RNF43	17	56448329	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	37766166	56448329	24746881	49	40702											
FASN	2194	ucsc.edu	37	17	80049269	80049269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	80049269	C	T	80049269	3	4	671	1	0	0	0	0	1	0	0	0	5690	623	22	2	6354	2	FASN	17	80049269	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	23600940	80049269	1145941	50	40703											
EPS15L1	58513	bcgsc.ca	37	19	16513266	16513266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	16513266	T	C	16513266	3	2	671	1	0	0	0	0	1	0	0	0	5195	1609	56	3	969	3	EPS15L1	19	16513266	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		16513266	42615717	51	40704											
ZNF98	148198	mdanderson.org	37	19	22574547	22574547	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	22574547	T	A	22574547	3	1	671	1	0	0	0	0	1	0	0	0	18215	1841	64	5	232	5	ZNF98	19	22574547	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	6061281	22574547	36554436	52	40705											
ZNF416	55659	mdanderson.org	37	19	58084930	58084930	+	Silent	SNP	G	G	A	rs3746222	byfrequency	TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	58084930	G	A	58084930	2	1	671	1	0	0	0	0	0	0	0	1	17905	1103	39	1		1	ZNF416	19	58084930	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	35510383	58084930	1044053	53	40706											
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	T	58385793	C	T	58385793	3	4	671	1	0	0	0	0	1	0	0	0	18188	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	300863	58385793	743190	54	40707											
SIRPG	55423	mdanderson.org	37	20	1617069	1617069	+	Silent	SNP	A	A	G	rs2277761	byfrequency	TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	1617069	A	G	1617069	2	3	671	1	0	0	0	0	0	0	0	1	14349	214	8	3		3	SIRPG	20	1617069	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10		1617069	61408451	55	40708											
CCDC157	550631	broad.mit.edu	37	22	30766573	30766573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	30766573	G	A	30766573	3	1	671	1	0	0	0	0	1	0	0	0	2791	1145	40	1	689	1	CCDC157	22	30766573	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10		30766573	20537993	56	40709											
UBA1	7317	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	47062169	47062169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	G	47062169	A	G	47062169	3	3	671	1	0	0	0	0	1	0	0	0	16839	217	8	3	1227	3	UBA1	23	47062169	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10		47062169	108208391	57	40710											
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	51076024	G	A	51076024	2	1	671	1	0	0	0	0	0	0	0	1	10733	991	35	2		2	NUDT10	23	51076024	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	4013855	51076024	104194536	58	40711											
GPR112	139378	broad.mit.edu	37	X	135429078	135429078	+	Silent	SNP	T	T	C	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	C	135429078	T	C	135429078	2	2	671	1	0	0	0	0	0	0	0	1	6636	1596	56	3		3	GPR112	23	135429078	Silent	SNP	T	TCGA-KL-8333-01A-11D-2310-10	84353054	135429078	19841482	59	40712											
ABCD1	215	mdanderson.org	37	X	153008675	153008675	+	Silent	SNP	G	G	A	rs201197921		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6	A	153008675	G	A	153008675	2	1	671	1	0	0	0	0	0	0	0	1	60	1217	42	2		2	ABCD1	23	153008675	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	17579597	153008675	2261885	60	40713											
PDZK1IP1	10158	broad.mit.edu	37	1	47653017	47653017	+	Silent	SNP	G	G	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	47653017	G	A	47653017	2	1	672	1	0	0	0	0	0	0	0	1	11715	1277	45	2		2	PDZK1IP1	1	47653017	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10		47653017	201597604	1	40714											
USH2A	7399	broad.mit.edu	37	1	216219788	216219788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	216219788	T	C	216219788	3	2	672	1	0	0	0	0	1	0	0	0	17048	1783	62	3	9462	3	USH2A	1	216219788	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	168566771	216219788	33030833	2	40715											
ENAH	55740	broad.mit.edu	37	1	225702514	225702515	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	225702515	-	G	225702514	7	5	672	1	0	1	1	0	0	0	0	0	5113	1567	55	0	809	0	ENAH	1	225702514	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10	9482726	225702514	23548107	3	40716											
TRIM11	81559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	228582602	228582602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	228582602	A	G	228582602	3	3	672	1	0	0	0	0	1	0	0	0	16499	159	6	3	199	3	TRIM11	1	228582602	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	2880088	228582602	20668019	4	40717											
SLC1A4	6509	ucsc.edu	37	2	65217143	65217143	+	Silent	SNP	C	C	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	65217143	C	A	65217143	2	1	672	1	0	0	0	0	0	0	0	1	14447	726	26	4		4	SLC1A4	2	65217143	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10		65217143	177982230	5	40718											
MPHOSPH10	10199	bcgsc.ca	37	2	71357850	71357850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	71357850	G	A	71357850	3	1	672	1	0	0	0	0	1	0	0	0	9732	1116	39	1	57	1	MPHOSPH10	2	71357850	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	6140707	71357850	171841523	6	40719											
PRKRA	8575	mdanderson.org	37	2	179315757	179315757	+	Missense_Mutation	SNP	T	T	G	rs9406386	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	179315757	T	G	179315757	3	3	672	1	0	0	0	0	1	0	0	0	12534	1464	51	5	1004	5	PRKRA	2	179315757	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	107957907	179315757	63883616	7	40720											
NBEAL1	65065	broad.mit.edu	37	2	204055051	204055051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	204055051	A	G	204055051	3	3	672	1	0	0	0	0	1	0	0	0	10195	246	9	3	6947	3	NBEAL1	2	204055051	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	24739294	204055051	39144322	8	40721											
EEF1B2	1933	hgsc.bcm.edu	37	2	207027464	207027464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	207027464	C	T	207027464	3	4	672	1	0	0	0	0	1	0	0	0	4927	855	30	2	557	2	EEF1B2	2	207027464	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	2972413	207027464	36171909	9	40722											
SLC23A3	151295	ucsc.edu	37	2	220030023	220030023	+	Silent	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	220030023	A	G	220030023	2	3	672	1	0	0	0	0	0	0	0	1	14477	291	11	3		3	SLC23A3	2	220030023	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	13002559	220030023	23169350	10	40723											
COL4A3	1285	broad.mit.edu	37	2	228112294	228112294	+	Silent	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	228112294	A	G	228112294	2	3	672	1	0	0	0	0	0	0	0	1	3693	262	10	3		3	COL4A3	2	228112294	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	8082271	228112294	15087079	11	40724											
COPS8	10920	broad.mit.edu	37	2	238004481	238004481	+	Silent	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	238004481	A	G	238004481	2	3	672	1	0	0	0	0	0	0	0	1	3742	320	12	3		3	COPS8	2	238004481	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	9892187	238004481	5194892	12	40725											
AZI2	64343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	28365568	28365568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	28365568	C	T	28365568	3	4	672	1	0	0	0	0	1	0	0	0	1241	855	30	2	38	2	AZI2	3	28365568	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10		28365568	169656862	13	40726											
OR5H1	26341	mdanderson.org	37	3	97851892	97851892	+	Silent	SNP	G	G	A	rs5009897		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	97851892	G	A	97851892	2	1	672	1	0	0	0	0	0	0	0	1	11166	1045	37	1		1	OR5H1	3	97851892	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10	69486324	97851892	100170538	14	40727											
KALRN	8997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	124201729	124201729	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	124201729	A	T	124201729	3	4	672	1	0	0	0	0	1	0	0	0	7982	98	4	5	4370	5	KALRN	3	124201729	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	26349837	124201729	73820701	15	40728											
EPHB1	2047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	134873005	134873005	+	Missense_Mutation	SNP	G	G	A	rs183234182	by1000genomes	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	134873005	G	A	134873005	3	1	672	1	0	0	0	0	1	0	0	0	5176	1145	40	1	1331	1	EPHB1	3	134873005	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	10671276	134873005	63149425	16	40729											
CRIPAK	285464	hgsc.bcm.edu	37	4	1389130	1389130	+	Silent	SNP	G	G	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	1389130	G	A	1389130	2	1	672	1	0	0	0	0	0	0	0	1	3879	1219	43	2		2	CRIPAK	4	1389130	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10		1389130	189765146	17	40730											
UCHL1	7345	mdanderson.org	37	4	41259633	41259633	+	Missense_Mutation	SNP	C	C	A	rs5030732		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	41259633	C	A	41259633	3	1	672	1	0	0	0	0	1	0	0	0	16932	855	30	4	63	4	UCHL1	4	41259633	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	39870503	41259633	149894643	18	40731											
DOCK2	1794	ucsc.edu	37	5	169504838	169504838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	169504838	A	G	169504838	3	3	672	1	0	0	0	0	1	0	0	0	4689	304	11	3	5181	3	DOCK2	5	169504838	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10		169504838	11410422	19	40732											
HLA-C	3107	mdanderson.org	37	6	31238009	31238009	+	Silent	SNP	T	T	C	rs1131014	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	31238009	T	C	31238009	2	2	672	1	0	0	0	0	0	0	0	1	7204	1606	56	3		3	HLA-C	6	31238009	Silent	SNP	T	TCGA-KL-8334-01A-11D-2310-10		31238009	139877058	20	40733											
EHMT2	10919	broad.mit.edu;bcgsc.ca	37	6	31848574	31848574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	31848574	A	G	31848574	3	3	672	1	0	0	0	0	1	0	0	0	4986	72	3	3	312	3	EHMT2	6	31848574	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	610565	31848574	139266493	21	40734											
HLA-DQA1	3117	bcgsc.ca	37	6	32609173	32609173	+	Missense_Mutation	SNP	C	C	G	rs10093	bycluster;byfrequency;by1000genomes	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	32609173	C	G	32609173	3	3	672	1	0	0	0	0	1	0	0	0	7211	711	25	4	175	4	HLA-DQA1	6	32609173	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	760599	32609173	138505894	22	40735											
CPNE5	57699	broad.mit.edu;ucsc.edu	37	6	36759870	36759870	+	Silent	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	36759870	A	G	36759870	2	3	672	1	0	0	0	0	0	0	0	1	3817	146	6	3		3	CPNE5	6	36759870	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	4150697	36759870	134355197	23	40736											
CNR1	1268	hgsc.bcm.edu	37	6	88853866	88853866	+	Silent	SNP	C	C	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	88853866	C	T	88853866	2	4	672	1	0	0	0	0	0	0	0	1	3633	912	32	2		2	CNR1	6	88853866	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10	52093996	88853866	82261201	24	40737											
URGCP	55665	broad.mit.edu	37	7	43917145	43917146	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	43917146	-	C	43917145	7	5	672	1	0	1	1	0	0	0	0	0	17038	1190	42	0	882	0	URGCP	7	43917145	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10		43917145	115221518	25	40738											
KIAA1324L	222223	broad.mit.edu	37	7	86542297	86542297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	86542297	T	C	86542297	3	2	672	1	0	0	0	0	1	0	0	0	8231	1551	54	3	1170	3	KIAA1324L	7	86542297	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	42625152	86542297	72596366	26	40739											
ZC3HAV1	56829	ucsc.edu	37	7	138794049	138794049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	138794049	A	G	138794049	3	3	672	1	0	0	0	0	1	0	0	0	17587	333	12	3	2735	3	ZC3HAV1	7	138794049	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	52251752	138794049	20344614	27	40740											
ASPN	54829	hgsc.bcm.edu	37	9	95237030	95237030	+	Missense_Mutation	SNP	A	A	C	rs143279922		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	95237030	A	C	95237030	3	2	672	1	0	0	0	0	1	0	0	0	1057	214	8	5	1020	5	ASPN	9	95237030	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10		95237030	45976401	28	40741											
KIAA1462	57608	ucsc.edu	37	10	30317404	30317404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	30317404	A	G	30317404	3	3	672	1	0	0	0	0	1	0	0	0	8241	304	11	3	2414	3	KIAA1462	10	30317404	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10		30317404	105217343	29	40742											
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	43659419	G	T	43659419	3	4	672	1	0	0	0	0	1	0	0	0	3941	1281	45	4	1100	4	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	13342015	43659419	91875328	30	40743											
UNC5B	219699	ucsc.edu	37	10	73044593	73044593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	73044593	A	G	73044593	3	3	672	1	0	0	0	0	1	0	0	0	17004	304	11	3	431	3	UNC5B	10	73044593	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	29385174	73044593	62490154	31	40744											
GPAM	57678	broad.mit.edu	37	10	113933564	113933564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	113933564	G	T	113933564	3	4	672	1	0	0	0	0	1	0	0	0	6595	1252	44	4	2097	4	GPAM	10	113933564	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	40888971	113933564	21601183	32	40745											
ATE1	11101	broad.mit.edu;bcgsc.ca	37	10	123596309	123596309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	123596309	A	G	123596309	3	3	672	1	0	0	0	0	1	0	0	0	1078	72	3	3	387	3	ATE1	10	123596309	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	9662745	123596309	11938438	33	40746											
MUC6	4588	bcgsc.ca	37	11	1016628	1016628	+	Missense_Mutation	SNP	G	G	A	rs202039948		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	1016628	G	A	1016628	3	1	672	1	0	0	0	0	1	0	0	0	9987	1261	44	2	1158	2	MUC6	11	1016628	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10		1016628	133989888	34	40747			1	94		5	5	1352	G		3.814319e-12
MUC6	4588	bcgsc.ca	37	11	1016662	1016662	+	Missense_Mutation	SNP	G	G	A	rs201489806		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	1016662	G	A	1016662	3	1	672	1	0	0	0	0	1	0	0	0	9987	1174	41	2	1192	2	MUC6	11	1016662	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	34	1016662	133989854	35	40748			1	94		5	5	1352	G		3.814319e-12
MUC6	4588	mdanderson.org	37	11	1017022	1017022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	1017022	G	A	1017022	3	1	672	1	0	0	0	0	1	0	0	0	9987	1348	47	2	1552	2	MUC6	11	1017022	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	360	1017022	133989494	36	40749			1	94		5	5	1352	G		3.814319e-12
MUC6	4588	mdanderson.org	37	11	1017543	1017543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	1017543	G	A	1017543	3	1	672	1	0	0	0	0	1	0	0	0	9987	1029	36	2	2073	2	MUC6	11	1017543	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	521	1017543	133988973	37	40750			1	94		5	5	1352	G		3.814319e-12
MUC6	4588	mdanderson.org	37	11	1017979	1017979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	1017979	G	A	1017979	3	1	672	1	0	0	0	0	1	0	0	0	9987	1232	43	2	2509	2	MUC6	11	1017979	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	436	1017979	133988537	38	40751			1	94		5	5	1352	G		3.814319e-12
TH	7054	broad.mit.edu	37	11	2186902	2186902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	2186902	A	G	2186902	3	3	672	1	0	0	0	0	1	0	0	0	15850	304	11	3	309	3	TH	11	2186902	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	1168923	2186902	132819614	39	40752											
TMEM132A	54972	ucsc.edu	37	11	60701218	60701218	+	Splice_Site	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	60701218	T	C	60701218	5	2	672	1	0	0	0	0	0	0	1	0	16057	1710	59	3	1594	3	TMEM132A	11	60701218	Splice_Site	SNP	T	TCGA-KL-8334-01A-11D-2310-10	58514316	60701218	74305298	40	40753											
RSF1	51773	broad.mit.edu	37	11	77409663	77409663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	77409663	T	C	77409663	3	2	672	1	0	0	0	0	1	0	0	0	13712	1609	56	3	1781	3	RSF1	11	77409663	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	16708445	77409663	57596853	41	40754											
PPP2R1B	5519	broad.mit.edu	37	11	111637006	111637007	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	111637007	-	C	111637006	7	5	672	1	0	1	1	0	0	0	0	0	12393	43	2	0	2008	0	PPP2R1B	11	111637006	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10	34227343	111637006	23369510	42	40755											
A2M	2	broad.mit.edu	37	12	9242558	9242558	+	Silent	SNP	C	C	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	9242558	C	T	9242558	2	4	672	1	0	0	0	0	0	0	0	1	4	680	24	2		2	A2M	12	9242558	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10		9242558	124609337	43	40756											
TAS2R30	259293	mdanderson.org	37	12	11286276	11286276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	11286276	G	C	11286276	3	2	672	1	0	0	0	0	1	0	0	0	15585	933	33	4	395	4	TAS2R30	12	11286276	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	2043718	11286276	122565619	44	40757											
SLCO1C1	53919	mdanderson.org	37	12	20905250	20905250	+	Missense_Mutation	SNP	C	C	T	rs6487138	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	20905250	C	T	20905250	3	4	672	1	0	0	0	0	1	0	0	0	14738	913	32	2	2084	2	SLCO1C1	12	20905250	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	9618974	20905250	112946645	45	40758											
ANKS1B	56899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	100377920	100377920	+	Silent	SNP	G	G	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	100377920	G	A	100377920	2	1	672	1	0	0	0	0	0	0	0	1	689	1074	38	1		1	ANKS1B	12	100377920	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10	79472670	100377920	33473975	46	40759											
FNDC3A	22862	broad.mit.edu	37	13	49719943	49719943	+	Silent	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	49719943	A	G	49719943	2	3	672	1	0	0	0	0	0	0	0	1	5976	378	14	3		3	FNDC3A	13	49719943	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10		49719943	65449935	47	40760											
MYH6	4624	broad.mit.edu	37	14	23871766	23871766	+	Missense_Mutation	SNP	C	C	A	rs200260629	alternate_allele	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	23871766	C	A	23871766	3	1	672	1	0	0	0	0	1	0	0	0	10045	536	19	4	4883	4	MYH6	14	23871766	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10		23871766	83477774	48	40761											
C14orf1	11161	broad.mit.edu	37	14	76118234	76118234	+	Splice_Site	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	76118234	T	C	76118234	5	2	672	1	0	0	0	0	0	0	1	0	1735	1536	53	3	207	3	C14orf1	14	76118234	Splice_Site	SNP	T	TCGA-KL-8334-01A-11D-2310-10	52246468	76118234	31231306	49	40762											
LCMT2	9836	ucsc.edu	37	15	43622621	43622621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	43622621	T	C	43622621	3	2	672	1	0	0	0	0	1	0	0	0	8686	1580	55	3	1997	3	LCMT2	15	43622621	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10		43622621	58908771	50	40763											
ADAMTS7	11173	broad.mit.edu;hgsc.bcm.edu	37	15	79060504	79060504	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	-	79060504	C	-	79060504	7	5	672	1	0	1	0	1	0	0	0	0	271	854	30	0	2476	0	ADAMTS7	15	79060504	Frame_Shift_Del	DEL	C	TCGA-KL-8334-01A-11D-2310-10	35437883	79060504	23470888	51	40764	530	2									
ADAMTS7	11173	bcgsc.ca	37	15	79060505	79060505	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	-	79060505	C	-	79060505	7	5	672	1	0	1	0	1	0	0	0	0	271	681	24	0	2477	0	ADAMTS7	15	79060505	Frame_Shift_Del	DEL	C	TCGA-KL-8334-01A-11D-2310-10	1	79060505	23470887	52	40765	530	2									
DECR2	26063	ucsc.edu	37	16	461365	461365	+	Silent	SNP	C	C	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	461365	C	T	461365	2	4	672	1	0	0	0	0	0	0	0	1	4385	726	26	2		2	DECR2	16	461365	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10		461365	89893388	53	40766											
TBC1D24	57465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	2547069	2547069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	2547069	A	G	2547069	3	3	672	1	0	0	0	0	1	0	0	0	15626	101	4	3	922	3	TBC1D24	16	2547069	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	2085704	2547069	87807684	54	40767											
SRRM2	23524	hgsc.bcm.edu	37	16	2819139	2819139	+	Silent	SNP	C	C	T	rs142230842	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	2819139	C	T	2819139	2	4	672	1	0	0	0	0	0	0	0	1	15181	668	24	2		2	SRRM2	16	2819139	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10	272070	2819139	87535614	55	40768											
KIAA0430	9665	broad.mit.edu	37	16	15718883	15718883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	15718883	T	C	15718883	3	2	672	1	0	0	0	0	1	0	0	0	8184	1725	60	3	3206	3	KIAA0430	16	15718883	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	12899744	15718883	74635870	56	40769											
LYRM1	57149	bcgsc.ca	37	16	20926885	20926885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	20926885	C	T	20926885	3	4	672	1	0	0	0	0	1	0	0	0	9126	536	19	1	10	1	LYRM1	16	20926885	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	5208002	20926885	69427868	57	40770											
IRX3	79191	ucsc.edu	37	16	54318841	54318841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	54318841	C	A	54318841	3	1	672	1	0	0	0	0	1	0	0	0	7852	739	26	4	565	4	IRX3	16	54318841	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	33391956	54318841	36035912	58	40771											
NFAT5	10725	bcgsc.ca	37	16	69724942	69724942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	69724942	T	C	69724942	3	2	672	1	0	0	0	0	1	0	0	0	10367	1725	60	3	1920	3	NFAT5	16	69724942	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	15406101	69724942	20629811	59	40772											
CLEC18A	348174	mdanderson.org	37	16	69988260	69988260	+	Silent	SNP	G	G	A	rs74456876		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	69988260	G	A	69988260	2	1	672	1	0	0	0	0	0	0	0	1	3504	962	34	2		2	CLEC18A	16	69988260	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10	263318	69988260	20366493	60	40773											
HOXB4	3214	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	46654334	46654334	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	46654334	T	A	46654334	3	1	672	1	0	0	0	0	1	0	0	0	7310	1638	57	5	253	5	HOXB4	17	46654334	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10		46654334	34540876	61	40774											
SGCA	6442	hgsc.bcm.edu	37	17	48245013	48245013	+	Silent	SNP	C	C	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	48245013	C	T	48245013	2	4	672	1	0	0	0	0	0	0	0	1	14212	842	30	2		2	SGCA	17	48245013	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10	1590679	48245013	32950197	62	40775											
KIF19	124602	ucsc.edu	37	17	72339295	72339295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	72339295	T	C	72339295	3	2	672	1	0	0	0	0	1	0	0	0	8289	1580	55	3	470	3	KIF19	17	72339295	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	24094282	72339295	8855915	63	40776											
DOT1L	84444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	2207667	2207667	+	Silent	SNP	C	C	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	2207667	C	T	2207667	2	4	672	1	0	0	0	0	0	0	0	1	4711	874	31	1		1	DOT1L	19	2207667	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10		2207667	56921316	64	40777											
MUC16	94025	mdanderson.org	37	19	8999479	8999479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	8999479	G	T	8999479	3	4	672	1	0	0	0	0	1	0	0	0	9980	1328	46	4	2943	4	MUC16	19	8999479	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	6791812	8999479	50129504	65	40778											
ICAM5	7087	mdanderson.org	37	19	10407169	10407169	+	Silent	SNP	G	G	C	rs710845	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	10407169	G	C	10407169	2	2	672	1	0	0	0	0	0	0	0	1	7490	1277	45	4		4	ICAM5	19	10407169	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10	1407690	10407169	48721814	66	40779											
LRP3	4037	broad.mit.edu	37	19	33697008	33697008	+	Silent	SNP	C	C	T	rs201999025		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	T	33697008	C	T	33697008	2	4	672	1	0	0	0	0	0	0	0	1	8965	639	23	1		1	LRP3	19	33697008	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10	23289839	33697008	25431975	67	40780											
GPCPD1	56261	broad.mit.edu	37	20	5548180	5548180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	5548180	T	A	5548180	3	1	672	1	0	0	0	0	1	0	0	0	6610	1403	49	5	874	5	GPCPD1	20	5548180	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10		5548180	57477340	68	40781											
USP9X	8239	broad.mit.edu;hgsc.bcm.edu	37	X	41088984	41088985	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	41088985	-	A	41088984	7	5	672	1	0	1	1	0	0	0	0	0	17102	1403	49	0	7549	0	USP9X	23	41088984	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10		41088984	114181576	69	40782	531	2									
USP9X	8239	bcgsc.ca	37	X	41088985	41088986	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	A	41088986	-	A	41088985	7	5	672	1	0	1	1	0	0	0	0	0	17102	420	15	0	7550	0	USP9X	23	41088985	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10	1	41088985	114181575	70	40783	531	2									
SHROOM4	57477	broad.mit.edu	37	X	50376364	50376364	+	Silent	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	50376364	A	G	50376364	2	3	672	1	0	0	0	0	0	0	0	1	14309	108	4	3		3	SHROOM4	23	50376364	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	9287379	50376364	104894196	71	40784											
PASD1	139135	broad.mit.edu	37	X	150791421	150791421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	C	150791421	T	C	150791421	3	2	672	1	0	0	0	0	1	0	0	0	11478	1667	58	3	453	3	PASD1	23	150791421	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	100415057	150791421	4479139	72	40785											
ATP2B3	492	broad.mit.edu	37	X	152823628	152823628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091	G	152823628	A	G	152823628	3	3	672	1	0	0	0	0	1	0	0	0	1141	43	2	3	2550	3	ATP2B3	23	152823628	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	2032207	152823628	2446932	73	40786											
ACAP3	116983	ucsc.edu;bcgsc.ca	37	1	1229272	1229272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	1229272	G	A	1229272	3	1	673	1	0	0	0	0	1	0	0	0	120	1203	42	2	221	2	ACAP3	1	1229272	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		1229272	248021349	1	40787											
CC2D1B	200014	ucsc.edu	37	1	52825206	52825206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	52825206	T	C	52825206	3	2	673	1	0	0	0	0	1	0	0	0	2729	1565	54	3	1697	3	CC2D1B	1	52825206	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	51595934	52825206	196425415	2	40788											
PCSK9	255738	ucsc.edu	37	1	55505643	55505643	+	Silent	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	55505643	T	C	55505643	2	2	673	1	0	0	0	0	0	0	0	1	11613	1606	56	3		3	PCSK9	1	55505643	Silent	SNP	T	TCGA-KL-8335-01A-11D-2310-10	2680437	55505643	193744978	3	40789											
AK5	26289	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	77759511	77759511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	77759511	G	A	77759511	3	1	673	1	0	0	0	0	1	0	0	0	443	1116	39	1	291	1	AK5	1	77759511	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	22253868	77759511	171491110	4	40790											
DNM3	26052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	171890935	171890935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	171890935	T	C	171890935	3	2	673	1	0	0	0	0	1	0	0	0	4675	1696	59	3	215	3	DNM3	1	171890935	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	94131424	171890935	77359686	5	40791											
ENAH	55740	mdanderson.org	37	1	225755060	225755060	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	225755060	T	A	225755060	3	1	673	1	0	0	0	0	1	0	0	0	5113	1609	56	5	1769	5	ENAH	1	225755060	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	53864125	225755060	23495561	6	40792											
EXO1	9156	bcgsc.ca	37	1	242042205	242042205	+	Missense_Mutation	SNP	C	C	T	rs145789527		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	242042205	C	T	242042205	3	4	673	1	0	0	0	0	1	0	0	0	5302	536	19	1	1707	1	EXO1	1	242042205	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	16287145	242042205	7208416	7	40793											
HNRNPU	3192	broad.mit.edu	37	1	245021520	245021520	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	245021520	G	A	245021520	2	1	673	1	0	0	0	0	0	0	0	1	7280	1074	38	1		1	HNRNPU	1	245021520	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	2979315	245021520	4229101	8	40794											
MPHOSPH10	10199	broad.mit.edu;hgsc.bcm.edu	37	2	71366962	71366963	+	In_Frame_Ins	INS	-	-	AGG	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	AGG	71366963	-	AGG	71366962	7	5	673	1	0	1	1	0	0	0	0	0	9732	69	3	0	1300	0	MPHOSPH10	2	71366962	In_Frame_Ins	INS	-	TCGA-KL-8335-01A-11D-2310-10		71366962	171832411	9	40795	532	2									
MPHOSPH10	10199	bcgsc.ca	37	2	71366963	71366964	+	In_Frame_Ins	INS	-	-	AGG	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	AGG	71366964	-	AGG	71366963	7	5	673	1	0	1	1	0	0	0	0	0	9732	942	33	0	1301	0	MPHOSPH10	2	71366963	In_Frame_Ins	INS	-	TCGA-KL-8335-01A-11D-2310-10	1	71366963	171832410	10	40796	532	2									
PCGF1	84759	broad.mit.edu;hgsc.bcm.edu	37	2	74734182	74734183	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	-	74734183	CT	-	74734182	7	5	673	1	0	1	0	1	0	0	0	0	11581	564	20	0	625	0	PCGF1	2	74734182	Frame_Shift_Del	DEL	CT	TCGA-KL-8335-01A-11D-2310-10	3367219	74734182	168465191	11	40797	533	2									
PCGF1	84759	bcgsc.ca	37	2	74734183	74734184	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	-	74734184	CT	-	74734183	7	5	673	1	0	1	0	1	0	0	0	0	11581	1551	54	0	626	0	PCGF1	2	74734183	Frame_Shift_Del	DEL	CT	TCGA-KL-8335-01A-11D-2310-10	1	74734183	168465190	12	40798	533	2									
RETSAT	54884	hgsc.bcm.edu;ucsc.edu	37	2	85573123	85573123	+	Silent	SNP	C	C	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	85573123	C	A	85573123	2	1	673	1	0	0	0	0	0	0	0	1	13251	697	25	4		4	RETSAT	2	85573123	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10	10838940	85573123	157626250	13	40799											
TUBA3D	113457	mdanderson.org	37	2	132240363	132240363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	132240363	A	G	132240363	3	3	673	1	0	0	0	0	1	0	0	0	16759	449	16	3	1313	3	TUBA3D	2	132240363	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	46667240	132240363	110959010	14	40800											
TTN	7273	mdanderson.org;bcgsc.ca	37	2	179403401	179403401	+	Missense_Mutation	SNP	C	C	T	rs72648276		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	179403401	C	T	179403401	3	4	673	1	0	0	0	0	1	0	0	0	16747	536	19	1	8860	1	TTN	2	179403401	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	47163038	179403401	63795972	15	40801											
STK11IP	114790	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	2	220473923	220473923	+	Silent	SNP	C	C	T	rs185836682	by1000genomes;alternate_allele	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	220473923	C	T	220473923	2	4	673	1	0	0	0	0	0	0	0	1	15300	535	19	1		1	STK11IP	2	220473923	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10	41070522	220473923	22725450	16	40802											
PRR21	643905	mdanderson.org	37	2	240982219	240982219	+	Missense_Mutation	SNP	A	A	G	rs74006013		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	240982219	A	G	240982219	3	3	673	1	0	0	0	0	1	0	0	0	12602	333	12	3	991	3	PRR21	2	240982219	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	20508296	240982219	2217154	17	40803											
HDLBP	3069	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	242178175	242178175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	242178175	T	C	242178175	3	2	673	1	0	0	0	0	1	0	0	0	7032	1406	49	3	1204	3	HDLBP	2	242178175	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	1195956	242178175	1021198	18	40804											
ARPP21	10777	mdanderson.org;bcgsc.ca	37	3	35833882	35833882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	35833882	C	A	35833882	3	1	673	1	0	0	0	0	1	0	0	0	978	739	26	4	2120	4	ARPP21	3	35833882	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		35833882	162188548	19	40805											
PXK	54899	broad.mit.edu	37	3	58395318	58395318	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	-	58395318	A	-	58395318	7	5	673	1	0	1	0	1	0	0	0	0	12862	243	9	0	1426	0	PXK	3	58395318	Frame_Shift_Del	DEL	A	TCGA-KL-8335-01A-11D-2310-10	22561436	58395318	139627112	20	40806											
NFKBIZ	64332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	101573954	101573954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	101573954	G	T	101573954	3	4	673	1	0	0	0	0	1	0	0	0	10390	1174	41	4	1518	4	NFKBIZ	3	101573954	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	43178636	101573954	96448476	21	40807											
KIAA2018	205717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	113375944	113375944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	113375944	G	C	113375944	3	2	673	1	0	0	0	0	1	0	0	0	8275	1299	45	4	2156	4	KIAA2018	3	113375944	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	11801990	113375944	84646486	22	40808											
MUC4	4585	mdanderson.org	37	3	195510053	195510053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	195510053	G	A	195510053	3	1	673	1	0	0	0	0	1	0	0	0	9985	1232	43	2		2	MUC4	3	195510053	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	82134109	195510053	2512377	23	40809			1	95		2	2	16	N	T_G	4.554641e-05
MUC4	4585	mdanderson.org	37	3	195510068	195510068	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	195510068	T	A	195510068	3	1	673	1	0	0	0	0	1	0	0	0	9985	1696	59	5		5	MUC4	3	195510068	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	15	195510068	2512362	24	40810			1	95		2	2	16	N	T_G	4.554641e-05
DRD5	1816	mdanderson.org	37	4	9784542	9784542	+	Missense_Mutation	SNP	A	A	C	rs2227851		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	9784542	A	C	9784542	3	2	673	1	0	0	0	0	1	0	0	0	4762	275	10	5	891	5	DRD5	4	9784542	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10		9784542	181369734	25	40811											
ANAPC4	29945	broad.mit.edu;mdanderson.org	37	4	25415322	25415322	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	25415322	G	A	25415322	2	1	673	1	0	0	0	0	0	0	0	1	604	1194	42	2		2	ANAPC4	4	25415322	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	15630780	25415322	165738954	26	40812											
DSPP	1834	broad.mit.edu	37	4	88536147	88536155	+	In_Frame_Del	DEL	ACAGCAGCA	ACAGCAGCA	-	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	ACAGCAGCA	ACAGCAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	-	88536155	ACAGCAGCA	-	88536147	7	5	673	1	0	1	0	1	0	0	0	0	4784	275	10	0	2347	0	DSPP	4	88536147	In_Frame_Del	DEL	ACAGCAGCA	TCGA-KL-8335-01A-11D-2310-10	63120825	88536147	102618129	27	40813											
ADH1B	125	broad.mit.edu;mdanderson.org	37	4	100234996	100234996	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	100234996	G	A	100234996	2	1	673	1	0	0	0	0	0	0	0	1	308	1048	37	1		1	ADH1B	4	100234996	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	11698849	100234996	90919280	28	40814											
CENPE	1062	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	104101509	104101509	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	104101509	G	C	104101509	3	2	673	1	0	0	0	0	1	0	0	0	3232	962	34	4	7052	4	CENPE	4	104101509	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	3866513	104101509	87052767	29	40815											
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	5489408	5489408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	5489408	G	T	5489408	4	4	673	1	0	0	0	0	0	1	0	0	8209	1175	41	4	6840	4	KIAA0947	5	5489408	Nonsense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		5489408	175425852	30	40816											
RBM27	54439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	145598649	145598649	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	145598649	A	T	145598649	3	4	673	1	0	0	0	0	1	0	0	0	13140	333	12	5	167	5	RBM27	5	145598649	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	140109241	145598649	35316611	31	40817											
C6orf201	404220	bcgsc.ca	37	6	4087901	4087901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	4087901	T	C	4087901	3	2	673	1	0	0	0	0	1	0	0	0	2353	1609	56	3	28	3	C6orf201	6	4087901	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10		4087901	167027166	32	40818											
NOTCH4	4855	hgsc.bcm.edu	37	6	32168996	32168996	+	Missense_Mutation	SNP	C	C	T	rs8192573	alternate_allele	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	32168996	C	T	32168996	3	4	673	1	0	0	0	0	1	0	0	0	10558	652	23	1	2010	1	NOTCH4	6	32168996	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	28081095	32168996	138946071	33	40819											
TDRD6	221400	broad.mit.edu	37	6	46661608	46661608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	46661608	C	T	46661608	3	4	673	1	0	0	0	0	1	0	0	0	15746	739	26	2	5745	2	TDRD6	6	46661608	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	14492612	46661608	124453459	34	40820											
AMD1	262	hgsc.bcm.edu	37	6	111214753	111214753	+	Silent	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	111214753	T	C	111214753	2	2	673	1	0	0	0	0	0	0	0	1	566	1509	53	3		3	AMD1	6	111214753	Silent	SNP	T	TCGA-KL-8335-01A-11D-2310-10	64553145	111214753	59900314	35	40821											
FAM184A	79632	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	6	119345242	119345242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	119345242	C	T	119345242	3	4	673	1	0	0	0	0	1	0	0	0	5515	884	31	1	2594	1	FAM184A	6	119345242	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	8130489	119345242	51769825	36	40822											
ABCB5	340273	broad.mit.edu;bcgsc.ca	37	7	20698214	20698214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	20698214	G	A	20698214	3	1	673	1	0	0	0	0	1	0	0	0	44	1058	37	1	1672	1	ABCB5	7	20698214	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		20698214	138440449	37	40823											
DPY19L1	23333	mdanderson.org	37	7	34987258	34987258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	34987258	A	G	34987258	3	3	673	1	0	0	0	0	1	0	0	0	4742	43	2	3	800	3	DPY19L1	7	34987258	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	14289044	34987258	124151405	38	40824											
CALD1	800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	134617794	134617794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	134617794	G	T	134617794	3	4	673	1	0	0	0	0	1	0	0	0	2583	1290	45	4	341	4	CALD1	7	134617794	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	99630536	134617794	24520869	39	40825											
EPHA1	2041	broad.mit.edu;hgsc.bcm.edu	37	7	143095693	143095693	+	Splice_Site	DEL	C	C	-	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	-	143095693	C	-	143095693	8	5	673	1	0	1	0	1	0	0	1	0	5167	521	18	0	1645	0	EPHA1	7	143095693	Splice_Site	DEL	C	TCGA-KL-8335-01A-11D-2310-10	8477899	143095693	16042970	40	40826	534	2									
EPHA1	2041	bcgsc.ca	37	7	143095694	143095694	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	-	143095694	C	-	143095694	7	5	673	1	0	1	0	1	0	0	0	0	5167	695	24	0	1646	0	EPHA1	7	143095694	Frame_Shift_Del	DEL	C	TCGA-KL-8335-01A-11D-2310-10	1	143095694	16042969	41	40827	534	2									
CLDN23	137075	broad.mit.edu	37	8	8560233	8560234	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	8560234	-	T	8560233	7	5	673	1	0	1	1	0	0	0	0	0	3486	739	26	0	327	0	CLDN23	8	8560233	Frame_Shift_Ins	INS	-	TCGA-KL-8335-01A-11D-2310-10		8560233	137803789	42	40828											
PSD3	23362	broad.mit.edu	37	8	18725567	18725567	+	Silent	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	18725567	T	C	18725567	2	2	673	1	0	0	0	0	0	0	0	1	12658	1606	56	3		3	PSD3	8	18725567	Silent	SNP	T	TCGA-KL-8335-01A-11D-2310-10	10165334	18725567	127638455	43	40829											
FBXO16	157574	broad.mit.edu	37	8	28309794	28309794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	28309794	T	C	28309794	3	2	673	1	0	0	0	0	1	0	0	0	5736	1667	58	3	187	3	FBXO16	8	28309794	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	9584227	28309794	118054228	44	40830											
OPRK1	4986	mdanderson.org;bcgsc.ca	37	8	54141872	54141872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	54141872	C	A	54141872	3	1	673	1	0	0	0	0	1	0	0	0	10892	826	29	4	18	4	OPRK1	8	54141872	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	25832078	54141872	92222150	45	40831											
EPPK1	83481	ucsc.edu;bcgsc.ca	37	8	144944498	144944498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	144944498	T	C	144944498	3	2	673	1	0	0	0	0	1	0	0	0	5192	1667	58	3	4342	3	EPPK1	8	144944498	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	90802626	144944498	1419524	46	40832											
UHRF2	115426	broad.mit.edu	37	9	6460652	6460652	+	Silent	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	6460652	C	T	6460652	2	4	673	1	0	0	0	0	0	0	0	1	16982	564	20	2		2	UHRF2	9	6460652	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10		6460652	134752779	47	40833											
PRSS3	5646	mdanderson.org	37	9	33796801	33796801	+	Splice_Site	SNP	G	G	A	rs143707562		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	33796801	G	A	33796801	5	1	673	1	0	0	0	0	0	0	1	0	12632	1159	40	1	422	1	PRSS3	9	33796801	Splice_Site	SNP	G	TCGA-KL-8335-01A-11D-2310-10	27336149	33796801	107416630	48	40834											
ANXA1	301	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	75783993	75783993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	75783993	C	T	75783993	3	4	673	1	0	0	0	0	1	0	0	0	714	652	23	1	949	1	ANXA1	9	75783993	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	41987192	75783993	65429438	49	40835											
SPTLC1	10558	broad.mit.edu;hgsc.bcm.edu	37	9	94808322	94808322	+	Silent	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	94808322	C	T	94808322	2	4	673	1	0	0	0	0	0	0	0	1	15135	465	17	2		2	SPTLC1	9	94808322	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10	19024329	94808322	46405109	50	40836											
ZNF462	58499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	109689044	109689044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	109689044	G	A	109689044	3	1	673	1	0	0	0	0	1	0	0	0	17938	1261	44	2	2857	2	ZNF462	9	109689044	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	14880722	109689044	31524387	51	40837											
ZNF462	58499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	109691641	109691641	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	109691641	G	A	109691641	2	1	673	1	0	0	0	0	0	0	0	1	17938	933	33	2		2	ZNF462	9	109691641	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	2597	109691641	31521790	52	40838											
ZFP37	7539	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	115806036	115806036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	115806036	C	A	115806036	3	1	673	1	0	0	0	0	1	0	0	0	17660	797	28	4	1034	4	ZFP37	9	115806036	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	6114395	115806036	25407395	53	40839											
MEGF9	1955	ucsc.edu	37	9	123476127	123476127	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	123476127	G	A	123476127	2	1	673	1	0	0	0	0	0	0	0	1	9471	1219	43	2		2	MEGF9	9	123476127	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	7670091	123476127	17737304	54	40840											
AKR1C4	1109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	5254675	5254675	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	5254675	C	T	5254675	4	4	673	1	0	0	0	0	0	1	0	0	472	528	19	1	689	1	AKR1C4	10	5254675	Nonsense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		5254675	130280072	55	40841											
SPAG6	9576	broad.mit.edu	37	10	22675803	22675803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	22675803	C	T	22675803	3	4	673	1	0	0	0	0	1	0	0	0	14995	913	32	2	611	2	SPAG6	10	22675803	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	17421128	22675803	112858944	56	40842											
ZNF365	22891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	64136341	64136341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	64136341	C	A	64136341	3	1	673	1	0	0	0	0	1	0	0	0	17881	565	20	4	391	4	ZNF365	10	64136341	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	41460538	64136341	71398406	57	40843											
SORCS3	22986	broad.mit.edu;mdanderson.org	37	10	106970992	106970992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	106970992	T	C	106970992	3	2	673	1	0	0	0	0	1	0	0	0	14945	1522	53	3	2425	3	SORCS3	10	106970992	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	42834651	106970992	28563755	58	40844											
MUC5B	727897	mdanderson.org	37	11	1271809	1271809	+	Missense_Mutation	SNP	G	G	A	rs2334756	byfrequency	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	1271809	G	A	1271809	3	1	673	1	0	0	0	0	1	0	0	0	9986	1087	38	1	13830	1	MUC5B	11	1271809	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		1271809	133734707	59	40845											
FOLH1	2346	broad.mit.edu;mdanderson.org	37	11	49175930	49175930	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	49175930	G	A	49175930	4	1	673	1	0	0	0	0	0	1	0	0	5986	1066	37	1	530	1	FOLH1	11	49175930	Nonsense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	47904121	49175930	85830586	60	40846											
OR9I1	219954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	57886020	57886020	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	57886020	G	A	57886020	2	1	673	1	0	0	0	0	0	0	0	1	11260	1136	40	1		1	OR9I1	11	57886020	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	8710090	57886020	77120496	61	40847											
INTS5	80789	hgsc.bcm.edu;ucsc.edu	37	11	62417411	62417411	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	62417411	G	A	62417411	2	1	673	1	0	0	0	0	0	0	0	1	7788	1190	42	2		2	INTS5	11	62417411	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	4531391	62417411	72589105	62	40848											
KDM2A	22992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	67022407	67022407	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	67022407	A	T	67022407	3	4	673	1	0	0	0	0	1	0	0	0	8131	333	12	5	3448	5	KDM2A	11	67022407	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	4604996	67022407	67984109	63	40849											
PLEKHB1	58473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	73360070	73360070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	73360070	C	A	73360070	3	1	673	1	0	0	0	0	1	0	0	0	12071	855	30	4	38	4	PLEKHB1	11	73360070	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	6337663	73360070	61646446	64	40850											
PDE3A	5139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	20522512	20522512	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	20522512	G	A	20522512	2	1	673	1	0	0	0	0	0	0	0	1	11644	1103	39	1		1	PDE3A	12	20522512	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10		20522512	113329383	65	40851											
NT5DC3	51559	broad.mit.edu	37	12	104171822	104171822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	C	104171822	T	C	104171822	3	2	673	1	0	0	0	0	1	0	0	0	10699	1609	56	3	218	3	NT5DC3	12	104171822	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	83649310	104171822	29680073	66	40852											
EBPL	84650	broad.mit.edu	37	13	50235138	50235138	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	50235138	T	G	50235138	3	3	673	1	0	0	0	0	1	0	0	0	4889	1580	55	5	37	5	EBPL	13	50235138	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10		50235138	64934740	67	40853											
C14orf93	60686	hgsc.bcm.edu	37	14	23468114	23468114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	23468114	G	A	23468114	3	1	673	1	0	0	0	0	1	0	0	0	1784	1000	35	2	1521	2	C14orf93	14	23468114	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		23468114	83881426	68	40854											
COCH	1690	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	31355089	31355089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	31355089	C	G	31355089	3	3	673	1	0	0	0	0	1	0	0	0	3658	796	28	4	1086	4	COCH	14	31355089	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	7886975	31355089	75994451	69	40855											
PYGL	5836	broad.mit.edu;mdanderson.org	37	14	51375670	51375670	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	51375670	G	A	51375670	2	1	673	1	0	0	0	0	0	0	0	1	12874	1140	40	1		1	PYGL	14	51375670	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	20020581	51375670	55973870	70	40856											
PLD4	122618	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	105394159	105394159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	105394159	G	T	105394159	3	4	673	1	0	0	0	0	1	0	0	0	12055	1241	43	4	246	4	PLD4	14	105394159	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	54018489	105394159	1955381	71	40857											
GABRB3	2562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	26825479	26825479	+	Silent	SNP	A	A	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	26825479	A	T	26825479	2	4	673	1	0	0	0	0	0	0	0	1	6175	117	5	5		5	GABRB3	15	26825479	Silent	SNP	A	TCGA-KL-8335-01A-11D-2310-10		26825479	75705913	72	40858											
AAGAB	79719	bcgsc.ca	37	15	67495157	67495166	+	Frame_Shift_Del	DEL	AATTCAGTGC	AATTCAGTGC	-	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	AATTCAGTGC	AATTCAGTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	-	67495166	AATTCAGTGC	-	67495157	7	5	673	1	0	1	0	1	0	0	0	0	15	116	4	0	1	0	AAGAB	15	67495157	Frame_Shift_Del	DEL	AATTCAGTGC	TCGA-KL-8335-01A-11D-2310-10	40669678	67495157	35036235	73	40859											
HCN4	10021	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	73617514	73617514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	73617514	C	T	73617514	3	4	673	1	0	0	0	0	1	0	0	0	7006	652	23	1	1863	1	HCN4	15	73617514	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	6122357	73617514	28913878	74	40860											
RPGRIP1L	23322	broad.mit.edu;mdanderson.org	37	16	53644927	53644927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	53644927	C	G	53644927	3	3	673	1	0	0	0	0	1	0	0	0	13563	913	32	4	306	4	RPGRIP1L	16	53644927	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		53644927	36709826	75	40861											
MBTPS1	8720	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	84132706	84132706	+	Missense_Mutation	SNP	G	G	A	rs150244031	by1000genomes	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	84132706	G	A	84132706	3	1	673	1	0	0	0	0	1	0	0	0	9368	1144	40	1	2869	1	MBTPS1	16	84132706	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	30487779	84132706	6222047	76	40862											
SLC13A5	284111	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	6606363	6606363	+	Nonsense_Mutation	SNP	G	G	T	rs148755614	byfrequency;alternate_allele	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	6606363	G	T	6606363	4	4	673	1	0	0	0	0	0	1	0	0	14408	1140	40	4	1096	4	SLC13A5	17	6606363	Nonsense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		6606363	74588847	77	40863											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7577018	7577018	+	Splice_Site	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	7577018	C	T	7577018	5	4	673	1	0	0	0	0	0	0	1	0	16393	521	18	2	366	2	TP53	17	7577018	Splice_Site	SNP	C	TCGA-KL-8335-01A-11D-2310-10	970655	7577018	73618192	78	40864											
SGSH	6448	broad.mit.edu	37	17	78190941	78190941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	78190941	T	G	78190941	3	3	673	1	0	0	0	0	1	0	0	0	14234	1696	59	5	1397	5	SGSH	17	78190941	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	70613923	78190941	3004269	79	40865											
CEP192	55125	broad.mit.edu	37	18	13049583	13049583	+	Silent	SNP	A	A	G	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	13049583	A	G	13049583	2	3	673	1	0	0	0	0	0	0	0	1	3253	301	11	3		3	CEP192	18	13049583	Silent	SNP	A	TCGA-KL-8335-01A-11D-2310-10		13049583	65027665	80	40866											
ZNF208	7757	mdanderson.org	37	19	22155783	22155783	+	Missense_Mutation	SNP	C	C	T	rs199604702		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	22155783	C	T	22155783	3	4	673	1	0	0	0	0	1	0	0	0	17778	507	18	2	1793	2	ZNF208	19	22155783	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		22155783	36973200	81	40867											
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	31770165	31770165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	31770165	C	A	31770165	3	1	673	1	0	0	0	0	1	0	0	0	16637	680	24	4	2715	4	TSHZ3	19	31770165	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	9614382	31770165	27358818	82	40868											
LRP3	4037	mdanderson.org	37	19	33697546	33697546	+	Silent	SNP	C	C	T	rs1056041	byfrequency	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	33697546	C	T	33697546	2	4	673	1	0	0	0	0	0	0	0	1	8965	883	31	1		1	LRP3	19	33697546	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10	1927381	33697546	25431437	83	40869											
NPHS1	4868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	36342723	36342723	+	Missense_Mutation	SNP	G	G	A	rs150180768		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	36342723	G	A	36342723	3	1	673	1	0	0	0	0	1	0	0	0	10589	1145	40	1	3824	1	NPHS1	19	36342723	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	2645177	36342723	22786260	84	40870											
ZFP82	284406	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	36884930	36884930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	36884930	C	T	36884930	3	4	673	1	0	0	0	0	1	0	0	0	17665	594	21	2	1290	2	ZFP82	19	36884930	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	542207	36884930	22244053	85	40871											
ZNF260	339324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	37006030	37006030	+	Silent	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	37006030	G	A	37006030	2	1	673	1	0	0	0	0	0	0	0	1	17814	1194	42	2		2	ZNF260	19	37006030	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	121100	37006030	22122953	86	40872											
LTBP4	8425	bcgsc.ca	37	19	41112172	41112172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	41112172	C	T	41112172	3	4	673	1	0	0	0	0	1	0	0	0	9083	681	24	2	1351	2	LTBP4	19	41112172	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	4106142	41112172	18016811	87	40873											
CYP2A7	1549	broad.mit.edu;mdanderson.org	37	19	41384783	41384783	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	41384783	A	T	41384783	3	4	673	1	0	0	0	0	1	0	0	0	4165	14	1	5	791	5	CYP2A7	19	41384783	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	272611	41384783	17744200	88	40874											
CYP2F1	1572	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	41628786	41628786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	41628786	C	A	41628786	3	1	673	1	0	0	0	0	1	0	0	0	4173	506	18	4	904	4	CYP2F1	19	41628786	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	244003	41628786	17500197	89	40875											
NLRP4	147945	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	56373450	56373450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	56373450	C	T	56373450	3	4	673	1	0	0	0	0	1	0	0	0	10486	536	19	1	2125	1	NLRP4	19	56373450	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	14744664	56373450	2755533	90	40876											
ZNF773	374928	mdanderson.org	37	19	58016677	58016677	+	Silent	SNP	A	A	G	rs199730365		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	58016677	A	G	58016677	2	3	673	1	0	0	0	0	0	0	0	1	18158	204	8	3		3	ZNF773	19	58016677	Silent	SNP	A	TCGA-KL-8335-01A-11D-2310-10	1643227	58016677	1112306	91	40877											
KCNS1	3787	ucsc.edu	37	20	43726792	43726792	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	43726792	C	T	43726792	4	4	673	1	0	0	0	0	0	1	0	0	8095	740	26	2	967	2	KCNS1	20	43726792	Nonsense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		43726792	19298728	92	40878											
SLC13A3	64849	bcgsc.ca	37	20	45212262	45212262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	G	45212262	A	G	45212262	3	3	673	1	0	0	0	0	1	0	0	0	14406	43	2	3	660	3	SLC13A3	20	45212262	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	1485470	45212262	17813258	93	40879											
ZNF831	128611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	57767954	57767954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	57767954	C	T	57767954	3	4	673	1	0	0	0	0	1	0	0	0	18197	536	19	1	1882	1	ZNF831	20	57767954	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	12555692	57767954	5257566	94	40880											
ERG	2078	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	21	39755470	39755470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	A	39755470	G	A	39755470	3	1	673	1	0	0	0	0	1	0	0	0	5224	1087	38	1	148	1	ERG	21	39755470	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		39755470	8374425	95	40881											
SGSM3	27352	hgsc.bcm.edu;ucsc.edu	37	22	40802519	40802519	+	Silent	SNP	C	C	T	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	40802519	C	T	40802519	2	4	673	1	0	0	0	0	0	0	0	1	14237	535	19	1		1	SGSM3	22	40802519	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10		40802519	10502047	96	40882											
ABCD1	215	mdanderson.org	37	X	153006076	153006076	+	Silent	SNP	C	C	T	rs199997983		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375	T	153006076	C	T	153006076	2	4	673	1	0	0	0	0	0	0	0	1	60	564	20	2		2	ABCD1	23	153006076	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10		153006076	2264484	97	40883											
PER3	8863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	7887260	7887260	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	7887260	C	G	7887260	3	3	674	1	0	0	0	0	1	0	0	0	11738	477	17	4	2313	4	PER3	1	7887260	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		7887260	241363361	1	40884											
LRRC40	55631	broad.mit.edu;bcgsc.ca	37	1	70641632	70641632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	70641632	A	T	70641632	3	4	674	1	0	0	0	0	1	0	0	0	9005	40	2	5	1006	5	LRRC40	1	70641632	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	62754372	70641632	178608989	2	40885											
NBPF10	100132406	mdanderson.org	37	1	145296486	145296486	+	Silent	SNP	G	G	A	rs3979106		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	145296486	G	A	145296486	2	1	674	1	0	0	0	0	0	0	0	1	10200	1103	39	1		1	NBPF10	1	145296486	Silent	SNP	G	TCGA-KL-8336-01A-11D-2310-10	74654854	145296486	103954135	3	40886											
KCNN3	3782	broad.mit.edu	37	1	154841678	154841678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	154841678	A	G	154841678	3	3	674	1	0	0	0	0	1	0	0	0	8087	72	3	3	1486	3	KCNN3	1	154841678	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	9545192	154841678	94408943	4	40887											
IFI16	3428	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	159023498	159023498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	159023498	T	C	159023498	3	2	674	1	0	0	0	0	1	0	0	0	7518	1493	52	3	2127	3	IFI16	1	159023498	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	4181820	159023498	90227123	5	40888											
F5	2153	broad.mit.edu	37	1	169511773	169511773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	169511773	A	G	169511773	3	3	674	1	0	0	0	0	1	0	0	0	5350	72	3	3	4171	3	F5	1	169511773	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	10488275	169511773	79738848	6	40889											
DHX9	1660	hgsc.bcm.edu	37	1	182827873	182827873	+	Silent	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	182827873	A	G	182827873	2	3	674	1	0	0	0	0	0	0	0	1	4518	69	3	3		3	DHX9	1	182827873	Silent	SNP	A	TCGA-KL-8336-01A-11D-2310-10	13316100	182827873	66422748	7	40890											
OR2C3	81472	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	247695452	247695452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	247695452	T	C	247695452	3	2	674	1	0	0	0	0	1	0	0	0	11000	1406	49	3	604	3	OR2C3	1	247695452	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	64867579	247695452	1555169	8	40891											
DNAH6	1768	broad.mit.edu	37	2	84811142	84811142	+	Missense_Mutation	SNP	A	A	G	rs146616208		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	84811142	A	G	84811142	3	3	674	1	0	0	0	0	1	0	0	0	4607	304	11	3	2303	3	DNAH6	2	84811142	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10		84811142	158388231	9	40892											
NCAPH	23397	ucsc.edu;bcgsc.ca	37	2	97034713	97034713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	97034713	A	G	97034713	3	3	674	1	0	0	0	0	1	0	0	0	10216	14	1	3	2064	3	NCAPH	2	97034713	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	12223571	97034713	146164660	10	40893											
SLC35F5	80255	broad.mit.edu	37	2	114508020	114508020	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	-	114508020	G	-	114508020	7	5	674	1	0	1	0	1	0	0	0	0	14605	1074	38	0	1220	0	SLC35F5	2	114508020	Frame_Shift_Del	DEL	G	TCGA-KL-8336-01A-11D-2310-10	17473307	114508020	128691353	11	40894											
ABCA12	26154	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	215812198	215812198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	215812198	C	T	215812198	3	4	674	1	0	0	0	0	1	0	0	0	30	913	32	2	624	2	ABCA12	2	215812198	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	101304178	215812198	27387175	12	40895											
QRICH1	54870	ucsc.edu;mdanderson.org;bcgsc.ca	37	3	49114159	49114159	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	49114159	G	C	49114159	3	2	674	1	0	0	0	0	1	0	0	0	12892	1328	46	4	2074	4	QRICH1	3	49114159	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10		49114159	148908271	13	40896											
IL17RB	55540	broad.mit.edu	37	3	53886982	53886982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	53886982	A	G	53886982	3	3	674	1	0	0	0	0	1	0	0	0	7647	246	9	3	457	3	IL17RB	3	53886982	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	4772823	53886982	144135448	14	40897											
ECE2	9718	broad.mit.edu	37	3	184002787	184002787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	184002787	T	C	184002787	3	2	674	1	0	0	0	0	1	0	0	0	4892	1667	58	3	1994	3	ECE2	3	184002787	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	130115805	184002787	14019643	15	40898											
MUC4	4585	mdanderson.org	37	3	195507735	195507735	+	Silent	SNP	G	G	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	195507735	G	T	195507735	2	4	674	1	0	0	0	0	0	0	0	1	9985	1335	47	4		4	MUC4	3	195507735	Silent	SNP	G	TCGA-KL-8336-01A-11D-2310-10	11504948	195507735	2514695	16	40899											
MUC4	4585	mdanderson.org	37	3	195509099	195509099	+	Missense_Mutation	SNP	T	T	C	rs71319804	bycluster;byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	195509099	T	C	195509099	3	2	674	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195509099	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	1364	195509099	2513331	17	40900											
FAT4	79633	ucsc.edu;mdanderson.org	37	4	126337737	126337737	+	Silent	SNP	A	A	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	126337737	A	C	126337737	2	2	674	1	0	0	0	0	0	0	0	1	5699	117	5	5		5	FAT4	4	126337737	Silent	SNP	A	TCGA-KL-8336-01A-11D-2310-10		126337737	64816539	18	40901											
PRMT10	90826	broad.mit.edu;bcgsc.ca	37	4	148594863	148594863	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	148594863	A	T	148594863	3	4	674	1	0	0	0	0	1	0	0	0	12546	214	8	5	2076	5	PRMT10	4	148594863	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	22257126	148594863	42559413	19	40902											
ADCY2	108	broad.mit.edu;mdanderson.org;bcgsc.ca	37	5	7707862	7707862	+	Missense_Mutation	SNP	G	G	A	rs140842335	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	7707862	G	A	7707862	3	1	674	1	0	0	0	0	1	0	0	0	294	1087	38	1	1346	1	ADCY2	5	7707862	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10		7707862	173207398	20	40903											
AMACR	23600	broad.mit.edu	37	5	33989302	33989302	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	33989302	G	C	33989302	3	2	674	1	0	0	0	0	1	0	0	0	562	1377	48	4	165	4	AMACR	5	33989302	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	26281440	33989302	146925958	21	40904											
WDR70	55100	bcgsc.ca	37	5	37721278	37721278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	37721278	G	T	37721278	3	4	674	1	0	0	0	0	1	0	0	0	17333	1174	41	4	1532	4	WDR70	5	37721278	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	3731976	37721278	143193982	22	40905	535	2									
WDR70	55100	broad.mit.edu	37	5	37721279	37721279	+	Silent	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	37721279	A	G	37721279	2	3	674	1	0	0	0	0	0	0	0	1	17333	320	12	3		3	WDR70	5	37721279	Silent	SNP	A	TCGA-KL-8336-01A-11D-2310-10	1	37721279	143193981	23	40906	535	2									
MUC21	394263	mdanderson.org	37	6	30954890	30954890	+	Missense_Mutation	SNP	A	A	G	rs9262379		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	30954890	A	G	30954890	3	3	674	1	0	0	0	0	1	0	0	0	9984	43	2	3	944	3	MUC21	6	30954890	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10		30954890	140160177	24	40907											
DAAM2	23500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	39867902	39867902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	39867902	T	C	39867902	3	2	674	1	0	0	0	0	1	0	0	0	4218	1667	58	3	2812	3	DAAM2	6	39867902	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	8913012	39867902	131247165	25	40908											
HSP90AB1	3326	mdanderson.org	37	6	44221047	44221047	+	Missense_Mutation	SNP	C	C	T	rs61729441		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	44221047	C	T	44221047	3	4	674	1	0	0	0	0	1	0	0	0	7409	913	32	2	2035	2	HSP90AB1	6	44221047	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	4353145	44221047	126894020	26	40909											
ZNF12	7559	broad.mit.edu	37	7	6732196	6732196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	6732196	T	C	6732196	3	2	674	1	0	0	0	0	1	0	0	0	17730	1725	60	3	1720	3	ZNF12	7	6732196	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10		6732196	152406467	27	40910											
HIP1	3092	hgsc.bcm.edu	37	7	75228522	75228522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	75228522	A	G	75228522	3	3	674	1	0	0	0	0	1	0	0	0	7121	391	14	3	3069	3	HIP1	7	75228522	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	68496326	75228522	83910141	28	40911											
CROT	54677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	87006732	87006732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	87006732	C	T	87006732	3	4	674	1	0	0	0	0	1	0	0	0	3896	855	30	2	1062	2	CROT	7	87006732	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	11778210	87006732	72131931	29	40912											
MUC17	140453	bcgsc.ca	37	7	100677833	100677833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	100677833	C	A	100677833	3	1	674	1	0	0	0	0	1	0	0	0	9981	536	19	4	3146	4	MUC17	7	100677833	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	13671101	100677833	58460830	30	40913			1	96		4	4	4115	N	G_C_A	1.448577e-07
MUC17	140453	mdanderson.org	37	7	100678932	100678932	+	Missense_Mutation	SNP	A	A	G	rs114941002	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	100678932	A	G	100678932	3	3	674	1	0	0	0	0	1	0	0	0	9981	304	11	3	4245	3	MUC17	7	100678932	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	1099	100678932	58459731	31	40914			1	96		4	4	4115	N	G_C_A	1.448577e-07
MUC17	140453	mdanderson.org	37	7	100681211	100681211	+	Missense_Mutation	SNP	G	G	C	rs147094151	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	100681211	G	C	100681211	3	2	674	1	0	0	0	0	1	0	0	0	9981	1029	36	4	6524	4	MUC17	7	100681211	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	2279	100681211	58457452	32	40915			1	96		4	4	4115	N	G_C_A	1.448577e-07
MUC17	140453	mdanderson.org	37	7	100681947	100681947	+	Missense_Mutation	SNP	A	A	T	rs139220229	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	100681947	A	T	100681947	3	4	674	1	0	0	0	0	1	0	0	0	9981	217	8	5	7260	5	MUC17	7	100681947	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	736	100681947	58456716	33	40916			1	96		4	4	4115	N	G_C_A	1.448577e-07
SLC4A2	6522	broad.mit.edu	37	7	150763999	150763999	+	Silent	SNP	T	T	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	150763999	T	C	150763999	2	2	674	1	0	0	0	0	0	0	0	1	14667	1712	60	3		3	SLC4A2	7	150763999	Silent	SNP	T	TCGA-KL-8336-01A-11D-2310-10	50082052	150763999	8374664	34	40917											
LRRC24	441381	ucsc.edu	37	8	145748410	145748410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	145748410	A	G	145748410	3	3	674	1	0	0	0	0	1	0	0	0	8986	72	3	3	554	3	LRRC24	8	145748410	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10		145748410	615612	35	40918											
SMARCA2	6595	mdanderson.org	37	9	2039818	2039818	+	Silent	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	2039818	A	G	2039818	2	3	674	1	0	0	0	0	0	0	0	1	14782	40	2	3		3	SMARCA2	9	2039818	Silent	SNP	A	TCGA-KL-8336-01A-11D-2310-10		2039818	139173613	36	40919											
BICD2	23299	ucsc.edu	37	9	95526797	95526797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	95526797	T	C	95526797	3	2	674	1	0	0	0	0	1	0	0	0	1429	1580	55	3	2375	3	BICD2	9	95526797	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	93486979	95526797	45686634	37	40920											
GSN	2934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	124089710	124089710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	124089710	T	C	124089710	3	2	674	1	0	0	0	0	1	0	0	0	6832	1551	54	3	1943	3	GSN	9	124089710	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	28562913	124089710	17123721	38	40921											
DNAJB12	54788	bcgsc.ca	37	10	74095605	74095605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	74095605	C	T	74095605	3	4	674	1	0	0	0	0	1	0	0	0	4619	797	28	2	40	2	DNAJB12	10	74095605	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		74095605	61439142	39	40922											
USP54	159195	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	75331190	75331190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	75331190	A	C	75331190	3	2	674	1	0	0	0	0	1	0	0	0	17097	130	5	5	4909	5	USP54	10	75331190	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	1235585	75331190	60203557	40	40923											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	10	89711960	89711962	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	-	89711962	TGT	-	89711960	7	5	674	1	0	1	0	1	0	0	0	0	12748	1580	55	0	600	0	PTEN	10	89711960	In_Frame_Del	DEL	TGT	TCGA-KL-8336-01A-11D-2310-10	14380770	89711960	45822787	41	40924	536	2									
PTEN	5728	bcgsc.ca	37	10	89711961	89711963	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	-	89711963	TGT	-	89711961	7	5	674	1	0	1	0	1	0	0	0	0	12748	1364	48	0	601	0	PTEN	10	89711961	In_Frame_Del	DEL	TGT	TCGA-KL-8336-01A-11D-2310-10	1	89711961	45822786	42	40925	536	2									
MUC2	4583	mdanderson.org	37	11	1093274	1093274	+	Missense_Mutation	SNP	C	C	T	rs11245949		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	1093274	C	T	1093274	3	4	674	1	0	0	0	0	1	0	0	0	9982	893	31	1	5211	1	MUC2	11	1093274	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		1093274	133913242	43	40926											
OR52L1	338751	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	6007311	6007311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	6007311	G	A	6007311	3	1	674	1	0	0	0	0	1	0	0	0	11132	1290	45	2	143	2	OR52L1	11	6007311	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	4914037	6007311	128999205	44	40927											
TRIM3	10612	hgsc.bcm.edu;ucsc.edu	37	11	6477762	6477762	+	Silent	SNP	C	C	A	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	6477762	C	A	6477762	2	1	674	1	0	0	0	0	0	0	0	1	16516	697	25	4		4	TRIM3	11	6477762	Silent	SNP	C	TCGA-KL-8336-01A-11D-2310-10	470451	6477762	128528754	45	40928											
LTBP3	4054	hgsc.bcm.edu;mdanderson.org	37	11	65314277	65314277	+	Missense_Mutation	SNP	G	G	C	rs148780991	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	65314277	G	C	65314277	3	2	674	1	0	0	0	0	1	0	0	0	9082	1203	42	4	1745	4	LTBP3	11	65314277	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	58836515	65314277	69692239	46	40929											
INTS4	92105	mdanderson.org	37	11	77612478	77612478	+	Silent	SNP	T	T	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	77612478	T	G	77612478	2	3	674	1	0	0	0	0	0	0	0	1	7787	1770	62	5		5	INTS4	11	77612478	Silent	SNP	T	TCGA-KL-8336-01A-11D-2310-10	12298201	77612478	57394038	47	40930											
NARS2	79731	broad.mit.edu;bcgsc.ca	37	11	78277251	78277251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	78277251	C	T	78277251	3	4	674	1	0	0	0	0	1	0	0	0	10178	478	17	2	1037	2	NARS2	11	78277251	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	664773	78277251	56729265	48	40931											
DYNC2H1	79659	broad.mit.edu	37	11	103006273	103006273	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	103006273	A	T	103006273	3	4	674	1	0	0	0	0	1	0	0	0	4848	130	5	5	2317	5	DYNC2H1	11	103006273	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	24729022	103006273	32000243	49	40932											
TAS2R43	259289	mdanderson.org	37	12	11244602	11244602	+	Missense_Mutation	SNP	T	T	C	rs200288366		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	11244602	T	C	11244602	3	2	674	1	0	0	0	0	1	0	0	0	15593	1493	52	3	706	3	TAS2R43	12	11244602	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10		11244602	122607293	50	40933											
KRT84	3890	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	52774146	52774146	+	Splice_Site	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	52774146	C	T	52774146	5	4	674	1	0	0	0	0	0	0	1	0	8505	521	18	2	389	2	KRT84	12	52774146	Splice_Site	SNP	C	TCGA-KL-8336-01A-11D-2310-10	41529544	52774146	81077749	51	40934											
PPFIA2	8499	broad.mit.edu	37	12	81657079	81657079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	81657079	A	G	81657079	3	3	674	1	0	0	0	0	1	0	0	0	12317	304	11	3	135	3	PPFIA2	12	81657079	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	28882933	81657079	52194816	52	40935											
MGA	23269	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	42003374	42003374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	42003374	C	T	42003374	3	4	674	1	0	0	0	0	1	0	0	0	9547	759	27	1	2937	1	MGA	15	42003374	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		42003374	60528018	53	40936											
HAPLN3	145864	broad.mit.edu	37	15	89421386	89421386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	89421386	A	G	89421386	3	3	674	1	0	0	0	0	1	0	0	0	6963	72	3	3	188	3	HAPLN3	15	89421386	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	47418012	89421386	13110006	54	40937											
ZNF785	146540	ucsc.edu;bcgsc.ca	37	16	30596805	30596805	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	30596805	C	T	30596805	4	4	674	1	0	0	0	0	0	1	0	0	18169	595	21	2	1101	2	ZNF785	16	30596805	Nonsense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		30596805	59757948	55	40938											
ARMC5	79798	bcgsc.ca	37	16	31476458	31476458	+	Missense_Mutation	SNP	C	C	T	rs11150624	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	31476458	C	T	31476458	3	4	674	1	0	0	0	0	1	0	0	0	954	768	27	1	2128	1	ARMC5	16	31476458	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	879653	31476458	58878295	56	40939											
VPS53	55275	ucsc.edu	37	17	617869	617869	+	Silent	SNP	G	G	A	rs11558129	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	617869	G	A	617869	2	1	674	1	0	0	0	0	0	0	0	1	17227	1048	37	1		1	VPS53	17	617869	Silent	SNP	G	TCGA-KL-8336-01A-11D-2310-10		617869	80577341	57	40940											
ZZEF1	23140	broad.mit.edu	37	17	4046184	4046184	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	-	4046184	C	-	4046184	7	5	674	1	0	1	0	1	0	0	0	0	18267	842	30	0	9099	0	ZZEF1	17	4046184	Frame_Shift_Del	DEL	C	TCGA-KL-8336-01A-11D-2310-10	3428315	4046184	77149026	58	40941											
TP53	7157	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	7578455	7578455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	7578455	C	G	7578455	3	3	674	1	0	0	0	0	1	0	0	0	16393	768	27	4	823	4	TP53	17	7578455	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	3532271	7578455	73616755	59	40942											
GPR179	440435	ucsc.edu	37	17	36483472	36483472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	36483472	C	A	36483472	3	1	674	1	0	0	0	0	1	0	0	0	6681	739	26	4	1127	4	GPR179	17	36483472	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	28905017	36483472	44711738	60	40943											
NPTX1	4884	broad.mit.edu	37	17	78449421	78449421	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	78449421	A	C	78449421	3	2	674	1	0	0	0	0	1	0	0	0	10609	159	6	5	772	5	NPTX1	17	78449421	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	41965949	78449421	2745789	61	40944											
ANKRD30B	374860	mdanderson.org	37	18	14779986	14779986	+	Missense_Mutation	SNP	G	G	A	rs76927023		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	14779986	G	A	14779986	3	1	674	1	0	0	0	0	1	0	0	0	659	1058	37	1	1490	1	ANKRD30B	18	14779986	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10		14779986	63297262	62	40945											
DSC3	1825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	18	28611062	28611062	+	Silent	SNP	C	C	A	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	28611062	C	A	28611062	2	1	674	1	0	0	0	0	0	0	0	1	4769	494	18	4		4	DSC3	18	28611062	Silent	SNP	C	TCGA-KL-8336-01A-11D-2310-10	13831076	28611062	49466186	63	40946											
DAZAP1	26528	ucsc.edu	37	19	1432574	1432574	+	Silent	SNP	T	T	C	rs201283349	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	C	1432574	T	C	1432574	2	2	674	1	0	0	0	0	0	0	0	1	4246	1538	54	3		3	DAZAP1	19	1432574	Silent	SNP	T	TCGA-KL-8336-01A-11D-2310-10		1432574	57696409	64	40947											
PLIN4	729359	mdanderson.org	37	19	4512156	4512156	+	Missense_Mutation	SNP	C	C	T	rs112356938	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	4512156	C	T	4512156	3	4	674	1	0	0	0	0	1	0	0	0	12099	536	19	1	2315	1	PLIN4	19	4512156	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	3079582	4512156	54616827	65	40948											
PNPLA6	10908	bcgsc.ca	37	19	7607524	7607524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	7607524	G	T	7607524	3	4	674	1	0	0	0	0	1	0	0	0	12176	1203	42	4	1403	4	PNPLA6	19	7607524	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	3095368	7607524	51521459	66	40949											
S1PR5	53637	bcgsc.ca	37	19	10625364	10625364	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	10625364	C	T	10625364	4	4	674	1	0	0	0	0	0	1	0	0	13810	508	18	2	876	2	S1PR5	19	10625364	Nonsense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	3017840	10625364	48503619	67	40950											
ZNF799	90576	mdanderson.org	37	19	12501852	12501852	+	Missense_Mutation	SNP	C	C	T	rs200077318		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	12501852	C	T	12501852	3	4	674	1	0	0	0	0	1	0	0	0	18178	594	21	2	575	2	ZNF799	19	12501852	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	1876488	12501852	46627131	68	40951	537	2									
ZNF799	90576	mdanderson.org	37	19	12501855	12501855	+	Missense_Mutation	SNP	A	A	G	rs201077492		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	G	12501855	A	G	12501855	3	3	674	1	0	0	0	0	1	0	0	0	18178	217	8	3	578	3	ZNF799	19	12501855	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	3	12501855	46627128	69	40952	537	2									
FFAR3	2865	mdanderson.org	37	19	35850829	35850829	+	Missense_Mutation	SNP	G	G	A	rs381478	bycluster;byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	A	35850829	G	A	35850829	3	1	674	1	0	0	0	0	1	0	0	0	5836	971	34	2	1039	2	FFAR3	19	35850829	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	23348974	35850829	23278154	70	40953											
ZNF836	162962	mdanderson.org;bcgsc.ca	37	19	52660631	52660631	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	52660631	C	T	52660631	4	4	674	1	0	0	0	0	0	1	0	0	18199	595	21	2	2507	2	ZNF836	19	52660631	Nonsense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	16809802	52660631	6468352	71	40954											
PANX2	56666	broad.mit.edu	37	22	50616699	50616699	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	-	50616699	T	-	50616699	7	5	674	1	0	1	0	1	0	0	0	0	11428	1522	53	0	1564	0	PANX2	22	50616699	Frame_Shift_Del	DEL	T	TCGA-KL-8336-01A-11D-2310-10		50616699	687867	72	40955											
ARSE	415	hgsc.bcm.edu	37	X	2867365	2867365	+	Silent	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	2867365	C	T	2867365	2	4	674	1	0	0	0	0	0	0	0	1	990	680	24	2		2	ARSE	23	2867365	Silent	SNP	C	TCGA-KL-8336-01A-11D-2310-10		2867365	152403195	73	40956											
DCAF8L2	347442	hgsc.bcm.edu	37	X	27765387	27765407	+	In_Frame_Del	DEL	GGAGGAGGAGGAAGAGGAGGA	GGAGGAGGAGGAAGAGGAGGA	-	rs34350719	alternate_allele	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	GGAGGAGGAGGAAGAGGAGGA	GGAGGAGGAGGAAGAGGAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	-	27765407	GGAGGAGGAGGAAGAGGAGGA	-	27765387	7	5	674	1	0	1	0	1	0	0	0	0	4280	1219	43	0	377	0	DCAF8L2	23	27765387	In_Frame_Del	DEL	GGAGGAGGAGGAAGAGGAGGA	TCGA-KL-8336-01A-11D-2310-10	24898022	27765387	127505173	74	40957											
CXorf66	347487	broad.mit.edu	37	X	139038180	139038180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029	T	139038180	C	T	139038180	3	4	674	1	0	0	0	0	1	0	0	0	4120	652	23	1	128	1	CXorf66	23	139038180	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	111272793	139038180	16232380	75	40958											
MXRA8	54587	hgsc.bcm.edu;mdanderson.org	37	1	1290408	1290408	+	Silent	SNP	A	A	G	rs147996767	by1000genomes	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	1290408	A	G	1290408	2	3	675	1	0	0	0	0	0	0	0	1	10012	291	11	3		3	MXRA8	1	1290408	Silent	SNP	A	TCGA-KL-8337-01A-11D-2310-10		1290408	247960213	1	40959											
NT5C1A	84618	broad.mit.edu	37	1	40124870	40124870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	40124870	C	A	40124870	3	1	675	1	0	0	0	0	1	0	0	0	10692	739	26	4	80	4	NT5C1A	1	40124870	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	38834462	40124870	209125751	2	40960											
LPPR5	0	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	99418744	99418744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	99418744	G	A	99418744	3	1	675	1	0	0	0	0	1	0	0	0	8935	1377	48	2	478	2	LPPR5	1	99418744	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	59293874	99418744	149831877	3	40961											
DCST2	127579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	155002604	155002604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	155002604	A	G	155002604	3	3	675	1	0	0	0	0	1	0	0	0	4305	159	6	3	1224	3	DCST2	1	155002604	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	55583860	155002604	94248017	4	40962											
SH2D2A	9047	broad.mit.edu	37	1	156777068	156777069	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	156777069	-	T	156777068	7	5	675	1	0	1	1	0	0	0	0	0	14245	1203	42	0	101	0	SH2D2A	1	156777068	Frame_Shift_Ins	INS	-	TCGA-KL-8337-01A-11D-2310-10	1774464	156777068	92473553	5	40963											
SPTA1	6708	ucsc.edu;bcgsc.ca	37	1	158641982	158641982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	158641982	T	C	158641982	3	2	675	1	0	0	0	0	1	0	0	0	15128	1783	62	3	6072	3	SPTA1	1	158641982	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	1864914	158641982	90608639	6	40964											
ADAMTS4	9507	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	161161010	161161010	+	Missense_Mutation	SNP	C	C	T	rs148170603		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	161161010	C	T	161161010	3	4	675	1	0	0	0	0	1	0	0	0	268	768	27	1	85	1	ADAMTS4	1	161161010	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	2519028	161161010	88089611	7	40965											
RGS16	6004	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	182572462	182572462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	182572462	G	T	182572462	3	4	675	1	0	0	0	0	1	0	0	0	13311	1281	45	4	567	4	RGS16	1	182572462	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	21411452	182572462	66678159	8	40966											
OR6F1	343169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	247875280	247875280	+	Missense_Mutation	SNP	C	C	T	rs145498993		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	247875280	C	T	247875280	3	4	675	1	0	0	0	0	1	0	0	0	11208	536	19	1	152	1	OR6F1	1	247875280	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	65302818	247875280	1375341	9	40967											
USP34	9736	broad.mit.edu	37	2	61415632	61415632	+	Silent	SNP	G	G	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	61415632	G	T	61415632	2	4	675	1	0	0	0	0	0	0	0	1	17077	1124	39	4		4	USP34	2	61415632	Silent	SNP	G	TCGA-KL-8337-01A-11D-2310-10		61415632	181783741	10	40968											
C2orf78	388960	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	74043649	74043649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	74043649	C	A	74043649	3	1	675	1	0	0	0	0	1	0	0	0	2197	855	30	4	2309	4	C2orf78	2	74043649	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	12628017	74043649	169155724	11	40969											
DAZL	1618	broad.mit.edu;mdanderson.org	37	3	16633629	16633629	+	Silent	SNP	C	C	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	16633629	C	T	16633629	2	4	675	1	0	0	0	0	0	0	0	1	4248	639	23	1		1	DAZL	3	16633629	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10		16633629	181388801	12	40970											
SETD2	29072	broad.mit.edu	37	3	47162042	47162042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	47162042	T	C	47162042	3	2	675	1	0	0	0	0	1	0	0	0	14144	1792	62	3	3686	3	SETD2	3	47162042	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	30528413	47162042	150860388	13	40971											
TMEM108	66000	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	133099424	133099424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	133099424	C	A	133099424	3	1	675	1	0	0	0	0	1	0	0	0	16036	507	18	4	875	4	TMEM108	3	133099424	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	85937382	133099424	64923006	14	40972											
FAM43A	131583	broad.mit.edu	37	3	194407863	194407863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	194407863	G	T	194407863	3	4	675	1	0	0	0	0	1	0	0	0	5569	1203	42	4	310	4	FAM43A	3	194407863	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	61308439	194407863	3614567	15	40973											
MUC4	4585	mdanderson.org	37	3	195507093	195507093	+	Silent	SNP	G	G	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	195507093	G	A	195507093	2	1	675	1	0	0	0	0	0	0	0	1	9985	1335	47	2		2	MUC4	3	195507093	Silent	SNP	G	TCGA-KL-8337-01A-11D-2310-10	1099230	195507093	2515337	16	40974											
SRD5A3	79644	broad.mit.edu	37	4	56212670	56212671	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	56212671	-	G	56212670	7	5	675	1	0	1	1	0	0	0	0	0	15152	72	3	0	169	0	SRD5A3	4	56212670	Frame_Shift_Ins	INS	-	TCGA-KL-8337-01A-11D-2310-10		56212670	134941606	17	40975											
AREG	374	broad.mit.edu;mdanderson.org	37	4	75314901	75314901	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	75314901	T	G	75314901	3	3	675	1	0	0	0	0	1	0	0	0	843	1493	52	5	458	5	AREG	4	75314901	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	19102231	75314901	115839375	18	40976											
FRG1	2483	mdanderson.org	37	4	190873347	190873347	+	Missense_Mutation	SNP	A	A	G	rs73024948		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	190873347	A	G	190873347	3	3	675	1	0	0	0	0	1	0	0	0	6053	246	9	3	174	3	FRG1	4	190873347	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	115558446	190873347	280929	19	40977											
HTR4	3360	ucsc.edu	37	5	147929716	147929716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	147929716	A	G	147929716	3	3	675	1	0	0	0	0	1	0	0	0	7456	188	7	3	1346	3	HTR4	5	147929716	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10		147929716	32985544	20	40978											
HLA-DRB1	3123	bcgsc.ca	37	6	32551958	32551958	+	Missense_Mutation	SNP	C	C	T	rs1064592	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	32551958	C	T	32551958	3	4	675	1	0	0	0	0	1	0	0	0	7215	739	26	2	522	2	HLA-DRB1	6	32551958	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10		32551958	138563109	21	40979											
TBCC	6903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	42713337	42713337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	42713337	G	A	42713337	3	1	675	1	0	0	0	0	1	0	0	0	15643	1232	43	2	569	2	TBCC	6	42713337	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	10161379	42713337	128401730	22	40980											
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	42946490	C	A	42946490	2	1	675	1	0	0	0	0	0	0	0	1	11757	697	25	4		4	PEX6	6	42946490	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10	233153	42946490	128168577	23	40981											
PERP	64065	ucsc.edu	37	6	138428444	138428444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	138428444	G	A	138428444	3	1	675	1	0	0	0	0	1	0	0	0	11739	1116	39	1	559	1	PERP	6	138428444	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	95481954	138428444	32686623	24	40982											
C1GALT1	56913	broad.mit.edu	37	7	7278070	7278070	+	Silent	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	7278070	A	G	7278070	2	3	675	1	0	0	0	0	0	0	0	1	1954	11	1	3		3	C1GALT1	7	7278070	Silent	SNP	A	TCGA-KL-8337-01A-11D-2310-10		7278070	151860593	25	40983											
TMEM196	256130	broad.mit.edu	37	7	19769017	19769017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	-	19769017	T	-	19769017	7	5	675	1	0	1	0	1	0	0	0	0	16130	1490	52	0	338	0	TMEM196	7	19769017	Frame_Shift_Del	DEL	T	TCGA-KL-8337-01A-11D-2310-10	12490947	19769017	139369646	26	40984											
DNAJB9	4189	broad.mit.edu	37	7	108212318	108212318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	108212318	G	T	108212318	3	4	675	1	0	0	0	0	1	0	0	0	4629	1203	42	4	150	4	DNAJB9	7	108212318	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	88443301	108212318	50926345	27	40985											
AASS	10157	broad.mit.edu	37	7	121755170	121755170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	121755170	A	G	121755170	3	3	675	1	0	0	0	0	1	0	0	0	24	246	9	3	1843	3	AASS	7	121755170	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	13542852	121755170	37383493	28	40986											
DENND2A	27147	ucsc.edu	37	7	140301430	140301430	+	Silent	SNP	A	A	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	140301430	A	C	140301430	2	2	675	1	0	0	0	0	0	0	0	1	4431	30	2	5		5	DENND2A	7	140301430	Silent	SNP	A	TCGA-KL-8337-01A-11D-2310-10	18546260	140301430	18837233	29	40987											
PCMTD1	115294	bcgsc.ca	37	8	52733191	52733191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	52733191	G	A	52733191	3	1	675	1	0	0	0	0	1	0	0	0	11593	1203	42	2	283	2	PCMTD1	8	52733191	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10		52733191	93630831	30	40988											
PDE7A	5150	ucsc.edu	37	8	66753704	66753704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	66753704	T	C	66753704	3	2	675	1	0	0	0	0	1	0	0	0	11658	1579	55	3	1556	3	PDE7A	8	66753704	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	14020513	66753704	79610318	31	40989											
TTLL11	158135	hgsc.bcm.edu;ucsc.edu	37	9	124751435	124751435	+	Silent	SNP	C	C	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	124751435	C	T	124751435	2	4	675	1	0	0	0	0	0	0	0	1	16736	825	29	2		2	TTLL11	9	124751435	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10		124751435	16461996	32	40990											
DDX31	64794	mdanderson.org	37	9	135545386	135545386	+	Missense_Mutation	SNP	C	C	T	rs75901862	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	135545386	C	T	135545386	3	4	675	1	0	0	0	0	1	0	0	0	4358	623	22	2	2391	2	DDX31	9	135545386	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	10793951	135545386	5668045	33	40991											
C9orf172	389813	mdanderson.org	37	9	139739643	139739643	+	Silent	SNP	T	T	C	rs10870132	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	139739643	T	C	139739643	2	2	675	1	0	0	0	0	0	0	0	1	2473	1567	55	3		3	C9orf172	9	139739643	Silent	SNP	T	TCGA-KL-8337-01A-11D-2310-10	4194257	139739643	1473788	34	40992											
SLC25A28	81894	hgsc.bcm.edu	37	10	101373519	101373519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	101373519	A	G	101373519	3	3	675	1	0	0	0	0	1	0	0	0	14504	420	15	3	652	3	SLC25A28	10	101373519	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10		101373519	34161228	35	40993											
CALHM2	51063	bcgsc.ca	37	10	105209398	105209398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	105209398	G	A	105209398	3	1	675	1	0	0	0	0	1	0	0	0	2585	1000	35	2	678	2	CALHM2	10	105209398	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	3835879	105209398	30325349	36	40994											
MUC2	4583	broad.mit.edu;mdanderson.org	37	11	1092631	1092631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	1092631	C	T	1092631	3	4	675	1	0	0	0	0	1	0	0	0	9982	855	30	2	4568	2	MUC2	11	1092631	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10		1092631	133913885	37	40995											
KRTAP5-5	439915	mdanderson.org	37	11	1651645	1651645	+	Missense_Mutation	SNP	A	A	G	rs77039648		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	1651645	A	G	1651645	3	3	675	1	0	0	0	0	1	0	0	0	8571	391	14	3	577	3	KRTAP5-5	11	1651645	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	559014	1651645	133354871	38	40996											
INS-IGF2	723961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	2168965	2168965	+	Silent	SNP	C	C	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	2168965	C	T	2168965	2	4	675	1	0	0	0	0	0	0	0	1	7770	755	27	1		1	INS-IGF2	11	2168965	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10	517320	2168965	132837551	39	40997											
CCDC73	493860	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	32635093	32635093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	32635093	G	A	32635093	3	1	675	1	0	0	0	0	1	0	0	0	2848	1059	37	1	480	1	CCDC73	11	32635093	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	30466128	32635093	102371423	40	40998											
GAL3ST3	89792	ucsc.edu	37	11	65810618	65810618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	65810618	T	C	65810618	3	2	675	1	0	0	0	0	1	0	0	0	6206	1667	58	3	643	3	GAL3ST3	11	65810618	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	33175525	65810618	69195898	41	40999											
MAML2	84441	mdanderson.org	37	11	95825362	95825362	+	Silent	SNP	C	C	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	95825362	C	T	95825362	2	4	675	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825362	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10	30014744	95825362	39181154	42	41000											
PRB2	653247	mdanderson.org	37	12	11546495	11546495	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	11546495	A	C	11546495	3	2	675	1	0	0	0	0	1	0	0	0	12453	246	9	5	737	5	PRB2	12	11546495	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10		11546495	122305400	43	41001											
KRT86	3892	mdanderson.org	37	12	52699044	52699044	+	Silent	SNP	C	C	G	rs61915660	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	52699044	C	G	52699044	2	3	675	1	0	0	0	0	0	0	0	1	8507	610	22	4		4	KRT86	12	52699044	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10	41152549	52699044	81152851	44	41002											
STRN3	29966	broad.mit.edu	37	14	31420078	31420078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	31420078	A	G	31420078	3	3	675	1	0	0	0	0	1	0	0	0	15342	72	3	3	1920	3	STRN3	14	31420078	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10		31420078	75929462	45	41003											
AHNAK2	113146	mdanderson.org	37	14	105411784	105411784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	105411784	G	T	105411784	3	4	675	1	0	0	0	0	1	0	0	0	415	1087	38	4	7387	4	AHNAK2	14	105411784	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	73991706	105411784	1937756	46	41004											
SPESP1	246777	broad.mit.edu	37	15	69238206	69238206	+	Silent	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	69238206	A	G	69238206	2	3	675	1	0	0	0	0	0	0	0	1	15052	233	9	3		3	SPESP1	15	69238206	Silent	SNP	A	TCGA-KL-8337-01A-11D-2310-10		69238206	33293186	47	41005											
SRRM2	23524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	2813651	2813651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	2813651	C	A	2813651	3	1	675	1	0	0	0	0	1	0	0	0	15181	913	32	4	3160	4	SRRM2	16	2813651	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10		2813651	87541102	48	41006											
CORO1A	11151	ucsc.edu	37	16	30198795	30198795	+	Silent	SNP	T	T	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	30198795	T	C	30198795	2	2	675	1	0	0	0	0	0	0	0	1	3755	1693	59	3		3	CORO1A	16	30198795	Silent	SNP	T	TCGA-KL-8337-01A-11D-2310-10	27385144	30198795	60155958	49	41007											
CLEC18A	348174	mdanderson.org	37	16	69988292	69988292	+	Missense_Mutation	SNP	C	C	T	rs2549089		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	69988292	C	T	69988292	3	4	675	1	0	0	0	0	1	0	0	0	3504	507	18	2	282	2	CLEC18A	16	69988292	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	39789497	69988292	20366461	50	41008											
HPR	3250	mdanderson.org	37	16	72108254	72108254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	72108254	A	G	72108254	3	3	675	1	0	0	0	0	1	0	0	0	7344	246	9	3	173	3	HPR	16	72108254	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	2119962	72108254	18246499	51	41009											
ATMIN	23300	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	81077627	81077627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	81077627	G	A	81077627	3	1	675	1	0	0	0	0	1	0	0	0	1110	1348	47	2	1538	2	ATMIN	16	81077627	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	8969373	81077627	9277126	52	41010											
C17orf74	201243	broad.mit.edu	37	17	7329926	7329926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	7329926	T	G	7329926	3	3	675	1	0	0	0	0	1	0	0	0	1881	1725	60	5	626	5	C17orf74	17	7329926	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10		7329926	73865284	53	41011											
TP53	7157	broad.mit.edu	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	G	A	rs28934573	bycluster	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	7577559	G	A	7577559	3	1	675	1	0	0	0	0	1	0	0	0	16393	1174	41	2	568	2	TP53	17	7577559	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	247633	7577559	73617651	54	41012											
TP53	7157	bcgsc.ca	37	17	7578370	7578370	+	Splice_Site	SNP	C	C	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	7578370	C	A	7578370	5	1	675	1	0	0	0	0	0	0	1	0	16393	521	18	4	738	4	TP53	17	7578370	Splice_Site	SNP	C	TCGA-KL-8337-01A-11D-2310-10	811	7578370	73616840	55	41013											
DGKE	8526	ucsc.edu	37	17	54935999	54935999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	54935999	A	T	54935999	3	4	675	1	0	0	0	0	1	0	0	0	4470	98	4	5	1287	5	DGKE	17	54935999	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	47357629	54935999	26259211	56	41014											
BPTF	2186	bcgsc.ca	37	17	65907097	65907097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	65907097	A	G	65907097	3	3	675	1	0	0	0	0	1	0	0	0	1497	304	11	3	3525	3	BPTF	17	65907097	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	10971098	65907097	15288113	57	41015											
CTDP1	9150	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	77513733	77513733	+	Silent	SNP	C	C	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	77513733	C	T	77513733	2	4	675	1	0	0	0	0	0	0	0	1	4004	796	28	2		2	CTDP1	18	77513733	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10		77513733	563515	58	41016											
GPR108	56927	mdanderson.org	37	19	6737481	6737481	+	Missense_Mutation	SNP	T	T	C	rs340138	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	6737481	T	C	6737481	3	2	675	1	0	0	0	0	1	0	0	0	6631	1580	55	3	1596	3	GPR108	19	6737481	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10		6737481	52391502	59	41017											
TMEM205	374882	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	11453585	11453585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	11453585	C	T	11453585	3	4	675	1	0	0	0	0	1	0	0	0	16142	768	27	1	97	1	TMEM205	19	11453585	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	4716104	11453585	47675398	60	41018											
INSL3	3640	ucsc.edu	37	19	17932190	17932190	+	Silent	SNP	T	T	C	rs1047233	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	17932190	T	C	17932190	2	2	675	1	0	0	0	0	0	0	0	1	7774	1509	53	3		3	INSL3	19	17932190	Silent	SNP	T	TCGA-KL-8337-01A-11D-2310-10	6478605	17932190	41196793	61	41019											
ZNF98	148198	broad.mit.edu	37	19	22575373	22575373	+	Missense_Mutation	SNP	C	C	T	rs684900	bycluster	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	22575373	C	T	22575373	3	4	675	1	0	0	0	0	1	0	0	0	18215	739	26	2	1058	2	ZNF98	19	22575373	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	4643183	22575373	36553610	62	41020											
ZNF254	9534	ucsc.edu	37	19	24310753	24310753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	24310753	A	G	24310753	3	3	675	1	0	0	0	0	1	0	0	0	17810	43	2	3	1965	3	ZNF254	19	24310753	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	1735380	24310753	34818230	63	41021											
EML2	24139	broad.mit.edu	37	19	46124887	46124887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	A	46124887	G	A	46124887	3	1	675	1	0	0	0	0	1	0	0	0	5099	1116	39	1	1139	1	EML2	19	46124887	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	21814134	46124887	13004096	64	41022											
NLRP11	204801	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	56321650	56321650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	56321650	T	G	56321650	3	3	675	1	0	0	0	0	1	0	0	0	10480	1783	62	5	2807	5	NLRP11	19	56321650	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	10196763	56321650	2807333	65	41023											
VSX1	30813	mdanderson.org	37	20	25062342	25062342	+	Missense_Mutation	SNP	G	G	T	rs6050307		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	T	25062342	G	T	25062342	3	4	675	1	0	0	0	0	1	0	0	0	17243	1116	39	4	819	4	VSX1	20	25062342	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10		25062342	37963178	66	41024											
COL9A3	1299	broad.mit.edu	37	20	61450635	61450636	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	G	61450636	-	G	61450635	7	5	675	1	0	1	1	0	0	0	0	0	3711	652	23	0	259	0	COL9A3	20	61450635	Frame_Shift_Ins	INS	-	TCGA-KL-8337-01A-11D-2310-10	36388293	61450635	1574885	67	41025											
PPM1F	9647	ucsc.edu	37	22	22287827	22287827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	22287827	T	C	22287827	3	2	675	1	0	0	0	0	1	0	0	0	12349	1551	54	3	697	3	PPM1F	22	22287827	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10		22287827	29016739	68	41026											
APOBEC3D	140564	broad.mit.edu	37	22	39421307	39421307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	39421307	T	C	39421307	3	2	675	1	0	0	0	0	1	0	0	0	792	1551	54	3	453	3	APOBEC3D	22	39421307	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	17133480	39421307	11883259	69	41027											
PRR5-ARHGAP8	553158	ucsc.edu	37	22	45204237	45204237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22	C	45204237	T	C	45204237	3	2	675	1	0	0	0	0	1	0	0	0	12611	1667	58	3	610	3	PRR5-ARHGAP8	22	45204237	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	5782930	45204237	6100329	70	41028											
ATAD3B	83858	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	1425803	1425803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	1425803	C	T	1425803	3	4	676	1	0	0	0	0	1	0	0	0	1074	550	19	1	1558	1	ATAD3B	1	1425803	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		1425803	247824818	1	41029											
ZBTB40	9923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	22839532	22839532	+	Silent	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	22839532	C	T	22839532	2	4	676	1	0	0	0	0	0	0	0	1	17554	639	23	1		1	ZBTB40	1	22839532	Silent	SNP	C	TCGA-KL-8338-01A-11D-2310-10	21413729	22839532	226411089	2	41030											
LEPR	3953	bcgsc.ca	37	1	66058516	66058516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	66058516	C	T	66058516	3	4	676	1	0	0	0	0	1	0	0	0	8735	838	29	2	685	2	LEPR	1	66058516	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	43218984	66058516	183192105	3	41031											
RPAP2	79871	bcgsc.ca	37	1	92799023	92799023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	G	92799023	A	G	92799023	3	3	676	1	0	0	0	0	1	0	0	0	13555	304	11	3	1565	3	RPAP2	1	92799023	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10	26740507	92799023	156451598	4	41032											
TCHH	7062	bcgsc.ca	37	1	152084677	152084677	+	Missense_Mutation	SNP	A	A	T	rs199649490		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	152084677	A	T	152084677	3	4	676	1	0	0	0	0	1	0	0	0	15712	188	7	5	4819	5	TCHH	1	152084677	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10	59285654	152084677	97165944	5	41033											
PIK3C2B	5287	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	204415184	204415184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	204415184	C	T	204415184	3	4	676	1	0	0	0	0	1	0	0	0	11917	768	27	1	2398	1	PIK3C2B	1	204415184	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	52330507	204415184	44835437	6	41034											
OR13G1	441933	mdanderson.org;bcgsc.ca	37	1	247835950	247835950	+	Missense_Mutation	SNP	T	T	C	rs1151640	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	C	247835950	T	C	247835950	3	2	676	1	0	0	0	0	1	0	0	0	10949	1406	49	3	533	3	OR13G1	1	247835950	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	43420766	247835950	1414671	7	41035											
GREB1	9687	ucsc.edu	37	2	11775503	11775503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	11775503	G	T	11775503	3	4	676	1	0	0	0	0	1	0	0	0	6767	1203	42	4	5540	4	GREB1	2	11775503	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10		11775503	231423870	8	41036											
OTOF	9381	bcgsc.ca	37	2	26698856	26698856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	G	26698856	A	G	26698856	3	3	676	1	0	0	0	0	1	0	0	0	11310	72	3	3	3353	3	OTOF	2	26698856	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10	14923353	26698856	216500517	9	41037											
RNF103	7844	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	86831681	86831681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	86831681	T	A	86831681	3	1	676	1	0	0	0	0	1	0	0	0	13436	1493	52	5	718	5	RNF103	2	86831681	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	60132825	86831681	156367692	10	41038											
PIKFYVE	200576	ucsc.edu;bcgsc.ca	37	2	209198216	209198216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	G	209198216	A	G	209198216	3	3	676	1	0	0	0	0	1	0	0	0	11931	202	7	3	4242	3	PIKFYVE	2	209198216	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10	122366535	209198216	34001157	11	41039											
PECR	55825	bcgsc.ca	37	2	216923679	216923679	+	Missense_Mutation	SNP	C	C	T	rs1429148	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	216923679	C	T	216923679	3	4	676	1	0	0	0	0	1	0	0	0	11724	922	32	2	486	2	PECR	2	216923679	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	7725463	216923679	26275694	12	41040											
MAGI1	9223	hgsc.bcm.edu	37	3	65425594	65425594	+	Silent	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	65425594	C	T	65425594	2	4	676	1	0	0	0	0	0	0	0	1	9197	796	28	2		2	MAGI1	3	65425594	Silent	SNP	C	TCGA-KL-8338-01A-11D-2310-10		65425594	132596836	13	41041											
RABL3	285282	broad.mit.edu	37	3	120417415	120417415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	C	120417415	T	C	120417415	3	2	676	1	0	0	0	0	1	0	0	0	12985	1406	49	3	337	3	RABL3	3	120417415	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	54991821	120417415	77605015	14	41042											
DHX36	170506	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	154033067	154033067	+	Missense_Mutation	SNP	T	T	A	rs138481688	alternate_allele	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	154033067	T	A	154033067	3	1	676	1	0	0	0	0	1	0	0	0	4511	1638	57	5	2747	5	DHX36	3	154033067	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	33615652	154033067	43989363	15	41043											
NDUFB5	4711	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	179336311	179336311	+	Splice_Site	SNP	T	T	C	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	C	179336311	T	C	179336311	5	2	676	1	0	0	0	0	0	0	1	0	10291	1652	57	3	469	3	NDUFB5	3	179336311	Splice_Site	SNP	T	TCGA-KL-8338-01A-11D-2310-10	25303244	179336311	18686119	16	41044											
MUC4	4585	broad.mit.edu;mdanderson.org	37	3	195509308	195509308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	195509308	G	A	195509308	3	1	676	1	0	0	0	0	1	0	0	0	9985	1294	45	2		2	MUC4	3	195509308	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	16172997	195509308	2513122	17	41045			1	97		3	3	2027	N	T_G_C	5.55518e-06
MUC4	4585	mdanderson.org	37	3	195510758	195510758	+	Missense_Mutation	SNP	C	C	T	rs200554304	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	195510758	C	T	195510758	3	4	676	1	0	0	0	0	1	0	0	0	9985	884	31	1		1	MUC4	3	195510758	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	1450	195510758	2511672	18	41046			1	97		3	3	2027	N	T_G_C	5.55518e-06
MUC4	4585	bcgsc.ca	37	3	195511334	195511334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	C	195511334	T	C	195511334	3	2	676	1	0	0	0	0	1	0	0	0	9985	1580	55	3		3	MUC4	3	195511334	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	576	195511334	2511096	19	41047			1	97		3	3	2027	N	T_G_C	5.55518e-06
ANKRD17	26057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	73959889	73959889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	73959889	C	A	73959889	3	1	676	1	0	0	0	0	1	0	0	0	646	739	26	4	2605	4	ANKRD17	4	73959889	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		73959889	117194387	20	41048											
CXCL5	6374	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	74863781	74863781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	74863781	G	T	74863781	3	4	676	1	0	0	0	0	1	0	0	0	4089	942	33	4	78	4	CXCL5	4	74863781	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	903892	74863781	116290495	21	41049											
MIER3	166968	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	56229122	56229122	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	G	56229122	T	G	56229122	3	3	676	1	0	0	0	0	1	0	0	0	9589	1838	64	5	974	5	MIER3	5	56229122	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10		56229122	124686138	22	41050											
VCAN	1462	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	82841438	82841438	+	Silent	SNP	G	G	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	82841438	G	T	82841438	2	4	676	1	0	0	0	0	0	0	0	1	17150	1306	46	4		4	VCAN	5	82841438	Silent	SNP	G	TCGA-KL-8338-01A-11D-2310-10	26612316	82841438	98073822	23	41051											
OR2B2	81697	hgsc.bcm.edu	37	6	27879249	27879249	+	Silent	SNP	G	G	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	27879249	G	A	27879249	2	1	676	1	0	0	0	0	0	0	0	1	10996	1335	47	2		2	OR2B2	6	27879249	Silent	SNP	G	TCGA-KL-8338-01A-11D-2310-10		27879249	143235818	24	41052											
HLA-B	3106	mdanderson.org	37	6	31324046	31324046	+	Missense_Mutation	SNP	C	C	T	rs148450964	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	31324046	C	T	31324046	3	4	676	1	0	0	0	0	1	0	0	0	7203	739	26	2	591	2	HLA-B	6	31324046	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	3444797	31324046	139791021	25	41053											
HLA-DRB5	3127	mdanderson.org	37	6	32497975	32497975	+	Silent	SNP	A	A	G	rs114195860	byfrequency;by1000genomes	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	G	32497975	A	G	32497975	2	3	676	1	0	0	0	0	0	0	0	1	7216	30	2	3		3	HLA-DRB5	6	32497975	Silent	SNP	A	TCGA-KL-8338-01A-11D-2310-10	1173929	32497975	138617092	26	41054											
CNPY3	10695	bcgsc.ca	37	6	42906384	42906384	+	Missense_Mutation	SNP	G	G	T	rs9471969	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	42906384	G	T	42906384	3	4	676	1	0	0	0	0	1	0	0	0	3631	971	34	4	714	4	CNPY3	6	42906384	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	10408409	42906384	128208683	27	41055											
GPR146	115330	ucsc.edu	37	7	1097895	1097895	+	Silent	SNP	A	A	G	rs61910751	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	G	1097895	A	G	1097895	2	3	676	1	0	0	0	0	0	0	0	1	6659	146	6	3		3	GPR146	7	1097895	Silent	SNP	A	TCGA-KL-8338-01A-11D-2310-10		1097895	158040768	28	41056											
SEMA3C	10512	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	80458056	80458056	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	80458056	G	A	80458056	4	1	676	1	0	0	0	0	0	1	0	0	14039	1066	37	1	2210	1	SEMA3C	7	80458056	Nonsense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	79360161	80458056	78680607	29	41057											
ZNF789	285989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	99084964	99084964	+	Silent	SNP	G	G	A	rs148718204	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	99084964	G	A	99084964	2	1	676	1	0	0	0	0	0	0	0	1	18172	1132	40	1		1	ZNF789	7	99084964	Silent	SNP	G	TCGA-KL-8338-01A-11D-2310-10	18626908	99084964	60053699	30	41058											
CSMD3	114788	bcgsc.ca	37	8	113516067	113516067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	113516067	G	A	113516067	3	1	676	1	0	0	0	0	1	0	0	0	3948	1057	37	1	6256	1	CSMD3	8	113516067	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10		113516067	32847955	31	41059											
OLFML2A	169611	broad.mit.edu	37	9	127572090	127572090	+	Missense_Mutation	SNP	G	G	A	rs201784600		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	127572090	G	A	127572090	3	1	676	1	0	0	0	0	1	0	0	0	10864	1087	38	1	1388	1	OLFML2A	9	127572090	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10		127572090	13641341	32	41060											
GPSM1	26086	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	139231484	139231484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	139231484	C	T	139231484	3	4	676	1	0	0	0	0	1	0	0	0	6741	652	23	1	547	1	GPSM1	9	139231484	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	11659394	139231484	1981947	33	41061											
TAF1D	79101	broad.mit.edu	37	11	93471453	93471453	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	-	93471453	T	-	93471453	7	5	676	1	0	1	0	1	0	0	0	0	15534	1609	56	0	571	0	TAF1D	11	93471453	Frame_Shift_Del	DEL	T	TCGA-KL-8338-01A-11D-2310-10		93471453	41535063	34	41062											
PEBP1	5037	ucsc.edu	37	12	118574067	118574067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	G	118574067	A	G	118574067	3	3	676	1	0	0	0	0	1	0	0	0	11720	275	10	3	55	3	PEBP1	12	118574067	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10		118574067	15277828	35	41063											
CASC5	57082	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	40944268	40944268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	40944268	C	T	40944268	3	4	676	1	0	0	0	0	1	0	0	0	2665	536	19	1	6540	1	CASC5	15	40944268	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		40944268	61587124	36	41064											
SPATA5L1	79029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	45707899	45707899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	45707899	C	A	45707899	3	1	676	1	0	0	0	0	1	0	0	0	15024	913	32	4	1777	4	SPATA5L1	15	45707899	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	4763631	45707899	56823493	37	41065											
ZNF609	23060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	64966530	64966530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	64966530	G	A	64966530	3	1	676	1	0	0	0	0	1	0	0	0	18047	1145	40	1	1491	1	ZNF609	15	64966530	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	19258631	64966530	37564862	38	41066											
CTU2	348180	broad.mit.edu	37	16	88781785	88781785	+	Splice_Site	DEL	A	A	-	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	-	88781785	A	-	88781785	8	5	676	1	0	1	0	1	0	0	1	0	4050	377	13	0		0	CTU2	16	88781785	Splice_Site	DEL	A	TCGA-KL-8338-01A-11D-2310-10		88781785	1572968	39	41067											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	7577114	C	T	7577114	3	4	676	1	0	0	0	0	1	0	0	0	16393	478	17	2	462	2	TP53	17	7577114	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		7577114	73618096	40	41068											
ZNF624	57547	bcgsc.ca	37	17	16527795	16527795	+	Missense_Mutation	SNP	C	C	A	rs8065506	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	16527795	C	A	16527795	3	1	676	1	0	0	0	0	1	0	0	0	18060	680	24	4	2196	4	ZNF624	17	16527795	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	8950681	16527795	64667415	41	41069											
UBTF	7343	mdanderson.org	37	17	42287519	42287519	+	Silent	SNP	C	C	T	rs2071167	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	42287519	C	T	42287519	2	4	676	1	0	0	0	0	0	0	0	1	16921	680	24	2		2	UBTF	17	42287519	Silent	SNP	C	TCGA-KL-8338-01A-11D-2310-10	25759724	42287519	38907691	42	41070											
CACNA1G	8913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	48653145	48653145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	48653145	G	A	48653145	3	1	676	1	0	0	0	0	1	0	0	0	2546	1116	39	1	1412	1	CACNA1G	17	48653145	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	6365626	48653145	32542065	43	41071											
RNMT	8731	broad.mit.edu	37	18	13746253	13746253	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	-	13746253	A	-	13746253	7	5	676	1	0	1	0	1	0	0	0	0	13519	131	5	0	1200	0	RNMT	18	13746253	Frame_Shift_Del	DEL	A	TCGA-KL-8338-01A-11D-2310-10		13746253	64330995	44	41072											
C19orf70	125988	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	5679701	5679701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	5679701	C	A	5679701	3	1	676	1	0	0	0	0	1	0	0	0	1949	884	31	4	265	4	C19orf70	19	5679701	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		5679701	53449282	45	41073											
FUT3	2525	bcgsc.ca	37	19	5843877	5843877	+	Missense_Mutation	SNP	G	G	A	rs28381969	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	A	5843877	G	A	5843877	3	1	676	1	0	0	0	0	1	0	0	0	6112	1145	40	1	115	1	FUT3	19	5843877	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	164176	5843877	53285106	46	41074											
TMEM150B	284417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	55824239	55824239	+	Silent	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	55824239	C	T	55824239	2	4	676	1	0	0	0	0	0	0	0	1	16080	639	23	1		1	TMEM150B	19	55824239	Silent	SNP	C	TCGA-KL-8338-01A-11D-2310-10	49980362	55824239	3304744	47	41075											
EDEM2	55741	bcgsc.ca	37	20	33711701	33711701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	G	33711701	A	G	33711701	3	3	676	1	0	0	0	0	1	0	0	0	4914	72	3	3	642	3	EDEM2	20	33711701	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10		33711701	29313819	48	41076											
MN1	4330	mdanderson.org	37	22	28194900	28194900	+	Silent	SNP	T	T	C	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	C	28194900	T	C	28194900	2	2	676	1	0	0	0	0	0	0	0	1	9680	1722	60	3		3	MN1	22	28194900	Silent	SNP	T	TCGA-KL-8338-01A-11D-2310-10		28194900	23109666	49	41077											
TRABD	80305	ucsc.edu	37	22	50636349	50636349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	C	50636349	T	C	50636349	3	2	676	1	0	0	0	0	1	0	0	0	16447	1551	54	3	795	3	TRABD	22	50636349	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	22441449	50636349	668217	50	41078											
AFF2	2334	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	147924508	147924508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c	T	147924508	C	T	147924508	3	4	676	1	0	0	0	0	1	0	0	0	357	623	22	2	1269	2	AFF2	23	147924508	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		147924508	7346052	51	41079											
ATAD3C	219293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	1391260	1391260	+	Silent	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	1391260	C	T	1391260	2	4	677	1	0	0	0	0	0	0	0	1	1075	547	19	1		1	ATAD3C	1	1391260	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10		1391260	247859361	1	41080											
CDK11B	984	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	1	1647844	1647844	+	Silent	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	1647844	G	A	1647844	2	1	677	1	0	0	0	0	0	0	0	1	3129	1190	42	2		2	CDK11B	1	1647844	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	256584	1647844	247602777	2	41081											
HSPG2	3339	ucsc.edu	37	1	22211304	22211304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	22211304	A	G	22211304	3	3	677	1	0	0	0	0	1	0	0	0	7437	159	6	3	12056	3	HSPG2	1	22211304	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	20563460	22211304	227039317	3	41082											
RBMXL1	494115	broad.mit.edu;mdanderson.org	37	1	89449440	89449440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	89449440	G	T	89449440	3	4	677	1	0	0	0	0	1	0	0	0	13166	942	33	4	1106	4	RBMXL1	1	89449440	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	67238136	89449440	159801181	4	41083											
VAV3	10451	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	108303461	108303461	+	Missense_Mutation	SNP	C	C	T	rs139065569		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	108303461	C	T	108303461	3	4	677	1	0	0	0	0	1	0	0	0	17145	884	31	1	1678	1	VAV3	1	108303461	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	18854021	108303461	140947160	5	41084											
CD1A	909	mdanderson.org	37	1	158226667	158226667	+	Silent	SNP	C	C	T	rs1042388	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	158226667	C	T	158226667	2	4	677	1	0	0	0	0	0	0	0	1	2976	639	23	1		1	CD1A	1	158226667	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	49923206	158226667	91023954	6	41085											
OR10J5	127385	broad.mit.edu	37	1	159504971	159504971	+	Missense_Mutation	SNP	G	G	A	rs149096656	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	159504971	G	A	159504971	3	1	677	1	0	0	0	0	1	0	0	0	10919	1145	40	1	104	1	OR10J5	1	159504971	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	1278304	159504971	89745650	7	41086											
TEDDM1	127670	bcgsc.ca	37	1	182368966	182368966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	182368966	A	G	182368966	3	3	677	1	0	0	0	0	1	0	0	0	15761	72	3	3	170	3	TEDDM1	1	182368966	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	22863995	182368966	66881655	8	41087											
KCNF1	3754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	11053758	11053758	+	Silent	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	11053758	C	T	11053758	2	4	677	1	0	0	0	0	0	0	0	1	8033	845	30	2		2	KCNF1	2	11053758	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10		11053758	232145615	9	41088											
HS6ST1	9394	broad.mit.edu;mdanderson.org	37	2	129025737	129025737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	129025737	T	A	129025737	3	1	677	1	0	0	0	0	1	0	0	0	7377	1535	53	5	4	5	HS6ST1	2	129025737	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10	117971979	129025737	114173636	10	41089			1	98		2	2	22	N	T_C	6.715601e-05
HS6ST1	9394	mdanderson.org	37	2	129025758	129025758	+	Missense_Mutation	SNP	C	C	A	rs142919429		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	129025758	C	A	129025758	3	1	677	1	0	0	0	0	1	0	0	0	7377	797	28	4	25	4	HS6ST1	2	129025758	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	21	129025758	114173615	11	41090			1	98		2	2	22	N	T_C	6.715601e-05
RUFY4	285180	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	218940146	218940146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	218940146	G	C	218940146	3	2	677	1	0	0	0	0	1	0	0	0	13754	1000	35	4	957	4	RUFY4	2	218940146	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	89914388	218940146	24259227	12	41091											
HES6	55502	hgsc.bcm.edu;ucsc.edu	37	2	239147555	239147555	+	Silent	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	239147555	A	G	239147555	2	3	677	1	0	0	0	0	0	0	0	1	7077	291	11	3		3	HES6	2	239147555	Silent	SNP	A	TCGA-KL-8339-01A-11D-2310-10	20207409	239147555	4051818	13	41092											
EOMES	8320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	27763289	27763289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	27763289	T	C	27763289	3	2	677	1	0	0	0	0	1	0	0	0	5149	1580	55	3	1587	3	EOMES	3	27763289	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10		27763289	170259141	14	41093											
SCN10A	6336	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	3	38739683	38739683	+	Silent	SNP	G	G	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	38739683	G	T	38739683	2	4	677	1	0	0	0	0	0	0	0	1	13925	987	35	4		4	SCN10A	3	38739683	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	10976394	38739683	159282747	15	41094											
PRSS45	377047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	46784475	46784475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	46784475	G	T	46784475	3	4	677	1	0	0	0	0	1	0	0	0	12639	933	33	4	313	4	PRSS45	3	46784475	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	8044792	46784475	151237955	16	41095											
AMIGO3	386724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	49755708	49755708	+	Silent	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	49755708	G	A	49755708	2	1	677	1	0	0	0	0	0	0	0	1	577	1045	37	1		1	AMIGO3	3	49755708	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	2971233	49755708	148266722	17	41096											
SPCS1	28972	mdanderson.org	37	3	52741725	52741725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	52741725	T	C	52741725	3	2	677	1	0	0	0	0	1	0	0	0	15035	1435	50	3	421	3	SPCS1	3	52741725	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10	2986017	52741725	145280705	18	41097											
PDZRN3	23024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	73657758	73657758	+	Silent	SNP	C	C	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	73657758	C	G	73657758	2	3	677	1	0	0	0	0	0	0	0	1	11716	726	26	4		4	PDZRN3	3	73657758	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	20916033	73657758	124364672	19	41098											
ROBO1	6091	hgsc.bcm.edu;ucsc.edu	37	3	78735005	78735005	+	Silent	SNP	G	G	A	rs80267939	by1000genomes	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	78735005	G	A	78735005	2	1	677	1	0	0	0	0	0	0	0	1	13526	1074	38	1		1	ROBO1	3	78735005	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	5077247	78735005	119287425	20	41099											
PLXND1	23129	broad.mit.edu	37	3	129290413	129290414	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	129290414	-	C	129290413	7	5	677	1	0	1	1	0	0	0	0	0	12134	1551	54	0	2582	0	PLXND1	3	129290413	Frame_Shift_Ins	INS	-	TCGA-KL-8339-01A-11D-2310-10	50555408	129290413	68732017	21	41100											
COL6A5	256076	mdanderson.org	37	3	130113788	130113788	+	Silent	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	130113788	A	G	130113788	2	3	677	1	0	0	0	0	0	0	0	1	3704	436	16	3		3	COL6A5	3	130113788	Silent	SNP	A	TCGA-KL-8339-01A-11D-2310-10	823375	130113788	67908642	22	41101											
FAM194A	131831	broad.mit.edu	37	3	150421548	150421548	+	Silent	SNP	T	T	C	rs146394127	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	150421548	T	C	150421548	2	2	677	1	0	0	0	0	0	0	0	1	5530	1606	56	3		3	FAM194A	3	150421548	Silent	SNP	T	TCGA-KL-8339-01A-11D-2310-10	20307760	150421548	47600882	23	41102											
SI	6476	bcgsc.ca	37	3	164776870	164776870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	164776870	C	A	164776870	3	1	677	1	0	0	0	0	1	0	0	0	14310	869	30	4	4352	4	SI	3	164776870	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	14355322	164776870	33245560	24	41103											
MUC4	4585	mdanderson.org	37	3	195508057	195508057	+	Missense_Mutation	SNP	G	G	A	rs199527570		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	195508057	G	A	195508057	3	1	677	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195508057	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	30731187	195508057	2514373	25	41104			2	99		3	3	3854	N	G_C	7.527494e-05
MUC4	4585	mdanderson.org	37	3	195511238	195511238	+	Missense_Mutation	SNP	C	C	T	rs3103956		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	195511238	C	T	195511238	3	4	677	1	0	0	0	0	1	0	0	0	9985	884	31	1		1	MUC4	3	195511238	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	3181	195511238	2511192	26	41105			2	99		3	3	3854	N	G_C	7.527494e-05
MUC4	4585	mdanderson.org	37	3	195511910	195511910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	195511910	C	T	195511910	3	4	677	1	0	0	0	0	1	0	0	0	9985	884	31	1		1	MUC4	3	195511910	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	672	195511910	2510520	27	41106			2	99		3	3	3854	N	G_C	7.527494e-05
HTRA3	94031	mdanderson.org	37	4	8294059	8294059	+	Silent	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	8294059	C	T	8294059	2	4	677	1	0	0	0	0	0	0	0	1	7462	639	23	1		1	HTRA3	4	8294059	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10		8294059	182860217	28	41107											
KCTD8	386617	broad.mit.edu	37	4	44177044	44177044	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	-	44177044	T	-	44177044	7	5	677	1	0	1	0	1	0	0	0	0	8122	1606	56	0	240	0	KCTD8	4	44177044	Frame_Shift_Del	DEL	T	TCGA-KL-8339-01A-11D-2310-10	35882985	44177044	146977232	29	41108											
KCTD8	386617	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	44177218	44177218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	44177218	T	G	44177218	3	3	677	1	0	0	0	0	1	0	0	0	8122	1722	60	5	414	5	KCTD8	4	44177218	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10	174	44177218	146977058	30	41109											
CLOCK	9575	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	56319289	56319289	+	Nonsense_Mutation	SNP	C	C	A	rs1056478	alternate_allele	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	56319289	C	A	56319289	4	1	677	1	0	0	0	0	0	1	0	0	3551	922	32	4	1438	4	CLOCK	4	56319289	Nonsense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	12142071	56319289	134834987	31	41110											
FSTL5	56884	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	162697068	162697068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	162697068	C	T	162697068	3	4	677	1	0	0	0	0	1	0	0	0	6087	913	32	2	2023	2	FSTL5	4	162697068	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	106377779	162697068	28457208	32	41111											
SDHA	6389	mdanderson.org	37	5	236642	236642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	236642	G	A	236642	3	1	677	1	0	0	0	0	1	0	0	0	13976	1203	42	2	1398	2	SDHA	5	236642	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		236642	180678618	33	41112											
CMYA5	202333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	79039710	79039710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	79039710	G	A	79039710	3	1	677	1	0	0	0	0	1	0	0	0	3592	1377	48	2	10709	2	CMYA5	5	79039710	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	78803068	79039710	101875550	34	41113											
LOX	4015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	121413160	121413160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	121413160	G	A	121413160	3	1	677	1	0	0	0	0	1	0	0	0	8905	1232	43	2	760	2	LOX	5	121413160	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	42373450	121413160	59502100	35	41114											
FSTL4	23105	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	132534972	132534972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	132534972	C	A	132534972	3	1	677	1	0	0	0	0	1	0	0	0	6086	768	27	4	188	4	FSTL4	5	132534972	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	11121812	132534972	48380288	36	41115											
NEUROG1	4762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	134871070	134871070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	134871070	C	A	134871070	3	1	677	1	0	0	0	0	1	0	0	0	10359	768	27	4	406	4	NEUROG1	5	134871070	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	2336098	134871070	46044190	37	41116											
DIAPH1	1729	broad.mit.edu	37	5	140907261	140907261	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	-	140907261	G	-	140907261	7	5	677	1	0	1	0	1	0	0	0	0	4520	942	33	0	686	0	DIAPH1	5	140907261	Frame_Shift_Del	DEL	G	TCGA-KL-8339-01A-11D-2310-10	6036191	140907261	40007999	38	41117											
NR3C1	2908	mdanderson.org	37	5	142779662	142779662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	142779662	A	G	142779662	3	3	677	1	0	0	0	0	1	0	0	0	10637	304	11	3	1677	3	NR3C1	5	142779662	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	1872401	142779662	38135598	39	41118											
TCERG1	10915	mdanderson.org	37	5	145838659	145838659	+	Silent	SNP	C	C	T	rs111965890	byfrequency;by1000genomes	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	145838659	C	T	145838659	2	4	677	1	0	0	0	0	0	0	0	1	15697	610	22	2		2	TCERG1	5	145838659	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	3058997	145838659	35076601	40	41119											
HIST1H2BO	8348	broad.mit.edu;mdanderson.org;bcgsc.ca	37	6	27861260	27861260	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	27861260	C	G	27861260	3	3	677	1	0	0	0	0	1	0	0	0	7161	913	32	4	22	4	HIST1H2BO	6	27861260	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		27861260	143253807	41	41120											
FAM46A	55603	ucsc.edu	37	6	82461832	82461832	+	Silent	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	82461832	G	A	82461832	2	1	677	1	0	0	0	0	0	0	0	1	5572	1335	47	2		2	FAM46A	6	82461832	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	54600572	82461832	88653235	42	41121											
WBSCR17	64409	broad.mit.edu	37	7	70880909	70880909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	70880909	C	A	70880909	3	1	677	1	0	0	0	0	1	0	0	0	17276	477	17	4	638	4	WBSCR17	7	70880909	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		70880909	88257754	43	41122											
GNB2	2783	mdanderson.org	37	7	100276355	100276355	+	Silent	SNP	C	C	T	rs17850902	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	100276355	C	T	100276355	2	4	677	1	0	0	0	0	0	0	0	1	6524	871	31	1		1	GNB2	7	100276355	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	29395446	100276355	58862308	44	41123											
ASB15	142685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	123254584	123254584	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	123254584	G	C	123254584	3	2	677	1	0	0	0	0	1	0	0	0	1019	942	33	4	30	4	ASB15	7	123254584	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	22978229	123254584	35884079	45	41124											
ARHGEF5	7984	broad.mit.edu	37	7	144062428	144062428	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	-	144062428	T	-	144062428	7	5	677	1	0	1	0	1	0	0	0	0	909	1551	54	0	2668	0	ARHGEF5	7	144062428	Frame_Shift_Del	DEL	T	TCGA-KL-8339-01A-11D-2310-10	20807844	144062428	15076235	46	41125											
MTMR9	66036	broad.mit.edu	37	8	11162509	11162509	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	-	11162509	A	-	11162509	7	5	677	1	0	1	0	1	0	0	0	0	9957	131	5	0	591	0	MTMR9	8	11162509	Frame_Shift_Del	DEL	A	TCGA-KL-8339-01A-11D-2310-10		11162509	135201513	47	41126											
CPNE3	8895	broad.mit.edu	37	8	87558847	87558847	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	-	87558847	A	-	87558847	7	5	677	1	0	1	0	1	0	0	0	0	3815	247	9	0	787	0	CPNE3	8	87558847	Frame_Shift_Del	DEL	A	TCGA-KL-8339-01A-11D-2310-10	76396338	87558847	58805175	48	41127											
KCNQ3	3786	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	133141626	133141626	+	Silent	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	133141626	G	A	133141626	2	1	677	1	0	0	0	0	0	0	0	1	8091	1103	39	1		1	KCNQ3	8	133141626	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	45582779	133141626	13222396	49	41128											
PHF20L1	51105	broad.mit.edu;mdanderson.org	37	8	133851655	133851655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	133851655	C	T	133851655	3	4	677	1	0	0	0	0	1	0	0	0	11839	884	31	1	2377	1	PHF20L1	8	133851655	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	710029	133851655	12512367	50	41129											
COL22A1	169044	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	139674282	139674282	+	Silent	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	139674282	G	A	139674282	2	1	677	1	0	0	0	0	0	0	0	1	3683	1103	39	1		1	COL22A1	8	139674282	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	5822627	139674282	6689740	51	41130											
GNA14	9630	broad.mit.edu	37	9	80049325	80049325	+	Silent	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	80049325	G	A	80049325	2	1	677	1	0	0	0	0	0	0	0	1	6509	1140	40	1		1	GNA14	9	80049325	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10		80049325	61164106	52	41131											
HEMGN	55363	broad.mit.edu;mdanderson.org	37	9	100693400	100693400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	100693400	C	T	100693400	3	4	677	1	0	0	0	0	1	0	0	0	7057	922	32	2	1185	2	HEMGN	9	100693400	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	20644075	100693400	40520031	53	41132											
FUBP3	8939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	133507382	133507382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	133507382	A	G	133507382	3	3	677	1	0	0	0	0	1	0	0	0	6100	101	4	3	1464	3	FUBP3	9	133507382	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	32813982	133507382	7706049	54	41133											
PNPLA7	375775	ucsc.edu;mdanderson.org;bcgsc.ca	37	9	140409846	140409846	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	140409846	G	C	140409846	3	2	677	1	0	0	0	0	1	0	0	0	12177	1232	43	4	2914	4	PNPLA7	9	140409846	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	6902464	140409846	803585	55	41134											
SRGN	5552	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	10	70863802	70863802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	70863802	T	C	70863802	3	2	677	1	0	0	0	0	1	0	0	0	15160	1667	58	3	413	3	SRGN	10	70863802	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10		70863802	64670945	56	41135											
FUT11	170384	ucsc.edu;bcgsc.ca	37	10	75532602	75532602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	75532602	T	C	75532602	3	2	677	1	0	0	0	0	1	0	0	0	6110	1609	56	3	513	3	FUT11	10	75532602	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10	4668800	75532602	60002145	57	41136											
OPN4	94233	mdanderson.org;bcgsc.ca	37	10	88423471	88423471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	88423471	G	T	88423471	3	4	677	1	0	0	0	0	1	0	0	0	10889	1232	43	4	1381	4	OPN4	10	88423471	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	12890869	88423471	47111276	58	41137											
TM9SF3	56889	ucsc.edu	37	10	98307653	98307653	+	Silent	SNP	T	T	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	98307653	T	C	98307653	2	2	677	1	0	0	0	0	0	0	0	1	15991	1565	54	3		3	TM9SF3	10	98307653	Silent	SNP	T	TCGA-KL-8339-01A-11D-2310-10	9884182	98307653	37227094	59	41138											
ANKRD2	26287	broad.mit.edu;mdanderson.org;bcgsc.ca	37	10	99342111	99342111	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	99342111	C	T	99342111	4	4	677	1	0	0	0	0	0	1	0	0	647	711	25	2	801	2	ANKRD2	10	99342111	Nonsense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	1034458	99342111	36192636	60	41139											
MUC5B	727897	broad.mit.edu	37	11	1264078	1264079	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	1264079	-	C	1264078	7	5	677	1	0	1	1	0	0	0	0	0	9986	159	6	0	6099	0	MUC5B	11	1264078	Frame_Shift_Ins	INS	-	TCGA-KL-8339-01A-11D-2310-10		1264078	133742438	61	41140											
OR8H2	390151	mdanderson.org	37	11	55872876	55872876	+	Missense_Mutation	SNP	C	C	T	rs2512961	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	55872876	C	T	55872876	3	4	677	1	0	0	0	0	1	0	0	0	11245	594	21	2	360	2	OR8H2	11	55872876	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	54608798	55872876	79133640	62	41141											
OR5M1	390168	mdanderson.org	37	11	56380811	56380811	+	Silent	SNP	T	T	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	56380811	T	C	56380811	2	2	677	1	0	0	0	0	0	0	0	1	11179	1838	64	3		3	OR5M1	11	56380811	Silent	SNP	T	TCGA-KL-8339-01A-11D-2310-10	507935	56380811	78625705	63	41142											
AASDHPPT	60496	bcgsc.ca	37	11	105950206	105950206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	105950206	A	G	105950206	3	3	677	1	0	0	0	0	1	0	0	0	23	333	12	3	202	3	AASDHPPT	11	105950206	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	49569395	105950206	29056310	64	41143											
HYLS1	219844	bcgsc.ca	37	11	125770068	125770068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	125770068	G	C	125770068	3	2	677	1	0	0	0	0	1	0	0	0	7476	943	33	4	807	4	HYLS1	11	125770068	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	19819862	125770068	9236448	65	41144											
CACNA1C	775	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	2794921	2794921	+	Missense_Mutation	SNP	G	G	A	rs71458011		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	2794921	G	A	2794921	3	1	677	1	0	0	0	0	1	0	0	0	2542	1059	37	1	6476	1	CACNA1C	12	2794921	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		2794921	131056974	66	41145											
FKBP4	2288	mdanderson.org;bcgsc.ca	37	12	2907983	2907983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	2907983	A	G	2907983	3	3	677	1	0	0	0	0	1	0	0	0	5917	449	16	3	519	3	FKBP4	12	2907983	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	113062	2907983	130943912	67	41146											
MED21	9412	broad.mit.edu;mdanderson.org;bcgsc.ca	37	12	27179446	27179446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	27179446	C	A	27179446	3	1	677	1	0	0	0	0	1	0	0	0	9446	595	21	4	142	4	MED21	12	27179446	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	24271463	27179446	106672449	68	41147											
PDZRN4	29951	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	41967467	41967467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	41967467	C	A	41967467	3	1	677	1	0	0	0	0	1	0	0	0	11717	825	29	4	2997	4	PDZRN4	12	41967467	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	14788021	41967467	91884428	69	41148											
KRT1	3848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	53073958	53073958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	53073958	C	G	53073958	3	3	677	1	0	0	0	0	1	0	0	0	8454	594	21	4	1795	4	KRT1	12	53073958	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	11106491	53073958	80777937	70	41149											
RASAL1	8437	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	113543595	113543595	+	Missense_Mutation	SNP	G	G	A	rs149732792		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	113543595	G	A	113543595	3	1	677	1	0	0	0	0	1	0	0	0	13076	1145	40	1	687	1	RASAL1	12	113543595	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	60469637	113543595	20308300	71	41150											
ZMYM5	9205	bcgsc.ca	37	13	20426145	20426145	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	20426145	T	A	20426145	3	1	677	1	0	0	0	0	1	0	0	0	17715	1435	50	5	1968	5	ZMYM5	13	20426145	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10		20426145	94743733	72	41151											
DIAPH3	81624	broad.mit.edu;mdanderson.org;bcgsc.ca	37	13	60240728	60240728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	60240728	C	T	60240728	3	4	677	1	0	0	0	0	1	0	0	0	4522	884	31	1	13	1	DIAPH3	13	60240728	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	39814583	60240728	54929150	73	41152											
PABPN1	8106	hgsc.bcm.edu	37	14	23790864	23790864	+	Silent	SNP	G	G	A	rs188436762	by1000genomes	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	23790864	G	A	23790864	2	1	677	1	0	0	0	0	0	0	0	1	11375	1335	47	2		2	PABPN1	14	23790864	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10		23790864	83558676	74	41153											
ADCY4	196883	hgsc.bcm.edu;mdanderson.org	37	14	24788628	24788628	+	Silent	SNP	G	G	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	24788628	G	T	24788628	2	4	677	1	0	0	0	0	0	0	0	1	296	1335	47	4		4	ADCY4	14	24788628	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	997764	24788628	82560912	75	41154											
WDR72	256764	ucsc.edu;mdanderson.org;bcgsc.ca	37	15	53908269	53908269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	53908269	C	A	53908269	3	1	677	1	0	0	0	0	1	0	0	0	17334	507	18	4	1198	4	WDR72	15	53908269	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		53908269	48623123	76	41155											
CD276	80381	broad.mit.edu;mdanderson.org	37	15	73996604	73996604	+	Missense_Mutation	SNP	G	G	A	rs150186392	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	73996604	G	A	73996604	3	1	677	1	0	0	0	0	1	0	0	0	2994	1116	39	1	1178	1	CD276	15	73996604	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	20088335	73996604	28534788	77	41156											
IL32	9235	broad.mit.edu	37	16	3119142	3119142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	3119142	G	A	3119142	3	1	677	1	0	0	0	0	1	0	0	0	7699	1116	39	1	375	1	IL32	16	3119142	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		3119142	87235611	78	41157											
GDPD3	79153	ucsc.edu;bcgsc.ca	37	16	30122776	30122776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	30122776	C	T	30122776	3	4	677	1	0	0	0	0	1	0	0	0	6332	623	22	2	332	2	GDPD3	16	30122776	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	27003634	30122776	60231977	79	41158											
RNF167	26001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	4845935	4845935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	4845935	C	T	4845935	3	4	677	1	0	0	0	0	1	0	0	0	13471	565	20	2	369	2	RNF167	17	4845935	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		4845935	76349275	80	41159											
KIAA0753	9851	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	6515464	6515464	+	Silent	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	6515464	C	T	6515464	2	4	677	1	0	0	0	0	0	0	0	1	8198	564	20	2		2	KIAA0753	17	6515464	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	1669529	6515464	74679746	81	41160											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A	rs28934574	bycluster	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	7577094	G	A	7577094	3	1	677	1	0	0	0	0	1	0	0	0	16393	1115	39	1	442	1	TP53	17	7577094	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	1061630	7577094	73618116	82	41161											
SGK494	0	hgsc.bcm.edu;ucsc.edu	37	17	26941165	26941165	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	26941165	G	C	26941165	3	2	677	1	0	0	0	0	1	0	0	0	14226	962	34	4	1265	4	SGK494	17	26941165	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	19364071	26941165	54254045	83	41162											
FMNL1	752	mdanderson.org	37	17	43319770	43319770	+	Silent	SNP	C	C	T	rs1801353	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	43319770	C	T	43319770	2	4	677	1	0	0	0	0	0	0	0	1	5958	564	20	2		2	FMNL1	17	43319770	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	16378605	43319770	37875440	84	41163											
USP14	9097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	211193	211193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	211193	G	T	211193	3	4	677	1	0	0	0	0	1	0	0	0	17057	1116	39	4	1456	4	USP14	18	211193	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		211193	77866055	85	41164											
APCDD1	147495	broad.mit.edu;mdanderson.org	37	18	10485688	10485688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	10485688	A	G	10485688	3	3	677	1	0	0	0	0	1	0	0	0	765	72	3	3	1018	3	APCDD1	18	10485688	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	10274495	10485688	67591560	86	41165											
SERPINB8	5271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	61654433	61654433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	61654433	C	A	61654433	3	1	677	1	0	0	0	0	1	0	0	0	14120	710	25	4	1081	4	SERPINB8	18	61654433	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	51168745	61654433	16422815	87	41166											
FUT3	2525	mdanderson.org	37	19	5843877	5843877	+	Missense_Mutation	SNP	G	G	A	rs28381969	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	5843877	G	A	5843877	3	1	677	1	0	0	0	0	1	0	0	0	6112	1145	40	1	115	1	FUT3	19	5843877	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		5843877	53285106	88	41167											
ZNF208	7757	mdanderson.org	37	19	22156850	22156850	+	Missense_Mutation	SNP	A	A	G	rs199858837		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	22156850	A	G	22156850	3	3	677	1	0	0	0	0	1	0	0	0	17778	101	4	3	2860	3	ZNF208	19	22156850	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	16312973	22156850	36972133	89	41168											
FCGBP	8857	mdanderson.org	37	19	40376927	40376927	+	Missense_Mutation	SNP	G	G	A	rs146581881		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	40376927	G	A	40376927	3	1	677	1	0	0	0	0	1	0	0	0	5785	1116	39	1	4774	1	FCGBP	19	40376927	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	18220077	40376927	18752056	90	41169											
PVRL2	5819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	45368669	45368669	+	Missense_Mutation	SNP	C	C	T	rs111808500		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	45368669	C	T	45368669	3	4	677	1	0	0	0	0	1	0	0	0	12853	768	27	1	236	1	PVRL2	19	45368669	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	4991742	45368669	13760314	91	41170											
NOVA2	4858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	46443970	46443970	+	Silent	SNP	G	G	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	46443970	G	A	46443970	2	1	677	1	0	0	0	0	0	0	0	1	10562	1277	45	2		2	NOVA2	19	46443970	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	1075301	46443970	12685013	92	41171											
SIGLEC5	8778	mdanderson.org	37	19	52132741	52132741	+	Silent	SNP	G	G	A	rs4802834	bycluster;byfrequency;by2hit2allele	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	52132741	G	A	52132741	2	1	677	1	0	0	0	0	0	0	0	1	14324	1103	39	1		1	SIGLEC5	19	52132741	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	5688771	52132741	6996242	93	41172											
ZNF845	91664	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	53856300	53856300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	53856300	C	A	53856300	3	1	677	1	0	0	0	0	1	0	0	0	18203	710	25	4	2382	4	ZNF845	19	53856300	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	1723559	53856300	5272683	94	41173											
LILRA2	11027	mdanderson.org	37	19	55086949	55086949	+	Silent	SNP	A	A	G	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	G	55086949	A	G	55086949	2	3	677	1	0	0	0	0	0	0	0	1	8792	330	12	3		3	LILRA2	19	55086949	Silent	SNP	A	TCGA-KL-8339-01A-11D-2310-10	1230649	55086949	4042034	95	41174											
ZNF329	79673	mdanderson.org;bcgsc.ca	37	19	58639916	58639916	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	A	58639916	C	A	58639916	4	1	677	1	0	0	0	0	0	1	0	0	17859	893	31	4	674	4	ZNF329	19	58639916	Nonsense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	3552967	58639916	489067	96	41175											
FAM83D	81610	mdanderson.org	37	20	37555116	37555116	+	Missense_Mutation	SNP	G	G	C	rs3752290	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	37555116	G	C	37555116	3	2	677	1	0	0	0	0	1	0	0	0	5643	1261	44	4	123	4	FAM83D	20	37555116	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		37555116	25470404	97	41176											
GTPBP5	26164	broad.mit.edu	37	20	60774224	60774225	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	C	60774225	-	C	60774224	7	5	677	1	0	1	1	0	0	0	0	0	6890	43	2	0	755	0	GTPBP5	20	60774224	Frame_Shift_Ins	INS	-	TCGA-KL-8339-01A-11D-2310-10	23219108	60774224	2251296	98	41177											
NIPSNAP1	8508	broad.mit.edu;mdanderson.org;bcgsc.ca	37	22	29956774	29956774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff	T	29956774	C	T	29956774	3	4	677	1	0	0	0	0	1	0	0	0	10436	623	22	2	211	2	NIPSNAP1	22	29956774	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		29956774	21347792	99	41178											
ELAVL4	1996	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	50659551	50659551	+	Missense_Mutation	SNP	C	C	T	rs138779266		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	50659551	C	T	50659551	3	4	678	1	0	0	0	0	1	0	0	0	5054	652	23	1	582	1	ELAVL4	1	50659551	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10		50659551	198591070	1	41179											
MEIS1	4211	broad.mit.edu	37	2	66667033	66667033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	66667033	A	C	66667033	3	2	678	1	0	0	0	0	1	0	0	0	9474	391	14	5	308	5	MEIS1	2	66667033	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10		66667033	176532340	2	41180											
ZNF638	27332	broad.mit.edu	37	2	71653715	71653715	+	Silent	SNP	T	T	A	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	A	71653715	T	A	71653715	2	1	678	1	0	0	0	0	0	0	0	1	18067	1770	62	5		5	ZNF638	2	71653715	Silent	SNP	T	TCGA-KL-8340-01A-11D-2310-10	4986682	71653715	171545658	3	41181											
SLC4A5	57835	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	74454137	74454137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	74454137	C	T	74454137	3	4	678	1	0	0	0	0	1	0	0	0	14670	739	26	2	344	2	SLC4A5	2	74454137	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	2800422	74454137	168745236	4	41182											
NCAPH	23397	broad.mit.edu;mdanderson.org;bcgsc.ca	37	2	97032995	97032995	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	97032995	G	C	97032995	3	2	678	1	0	0	0	0	1	0	0	0	10216	1275	44	4	1940	4	NCAPH	2	97032995	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	22578858	97032995	146166378	5	41183											
SLC39A10	57181	hgsc.bcm.edu;bcgsc.ca	37	2	196548601	196548601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	196548601	C	T	196548601	3	4	678	1	0	0	0	0	1	0	0	0	14626	681	24	2	1193	2	SLC39A10	2	196548601	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	99515606	196548601	46650772	6	41184											
LMCD1	29995	ucsc.edu;mdanderson.org	37	3	8579024	8579024	+	Silent	SNP	G	G	A	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	A	8579024	G	A	8579024	2	1	678	1	0	0	0	0	0	0	0	1	8851	933	33	2		2	LMCD1	3	8579024	Silent	SNP	G	TCGA-KL-8340-01A-11D-2310-10		8579024	189443406	7	41185											
CELSR3	1951	mdanderson.org	37	3	48694147	48694147	+	Silent	SNP	G	G	A	rs2286651	byfrequency	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	A	48694147	G	A	48694147	2	1	678	1	0	0	0	0	0	0	0	1	3225	1195	42	2		2	CELSR3	3	48694147	Silent	SNP	G	TCGA-KL-8340-01A-11D-2310-10	40115123	48694147	149328283	8	41186											
FILIP1L	11259	bcgsc.ca	37	3	99568907	99568907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	99568907	T	C	99568907	3	2	678	1	0	0	0	0	1	0	0	0	5902	1609	56	3	1823	3	FILIP1L	3	99568907	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	50874760	99568907	98453523	9	41187											
EEFSEC	60678	mdanderson.org	37	3	127872506	127872506	+	Silent	SNP	C	C	T	rs11711710	byfrequency	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	127872506	C	T	127872506	2	4	678	1	0	0	0	0	0	0	0	1	4933	784	28	2		2	EEFSEC	3	127872506	Silent	SNP	C	TCGA-KL-8340-01A-11D-2310-10	28303599	127872506	70149924	10	41188											
C3orf36	80111	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	133647421	133647421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	A	133647421	G	A	133647421	3	1	678	1	0	0	0	0	1	0	0	0	2228	1087	38	1	274	1	C3orf36	3	133647421	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	5774915	133647421	64375009	11	41189											
MUC4	4585	mdanderson.org	37	3	195509196	195509196	+	Missense_Mutation	SNP	G	G	C	rs76126602		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	195509196	G	C	195509196	3	2	678	1	0	0	0	0	1	0	0	0	9985	1136	40	4		4	MUC4	3	195509196	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	61861775	195509196	2513234	12	41190											
CENPC1	1060	hgsc.bcm.edu	37	4	68357934	68357934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	68357934	C	T	68357934	3	4	678	1	0	0	0	0	1	0	0	0	3231	507	18	2	368	2	CENPC1	4	68357934	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10		68357934	122796342	13	41191											
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	5464930	5464930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	G	5464930	A	G	5464930	3	3	678	1	0	0	0	0	1	0	0	0	8209	188	7	3	5533	3	KIAA0947	5	5464930	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10		5464930	175450330	14	41192											
DDX4	54514	broad.mit.edu	37	5	55111195	55111195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	55111195	C	T	55111195	3	4	678	1	0	0	0	0	1	0	0	0	4362	855	30	2	2160	2	DDX4	5	55111195	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	49646265	55111195	125804065	15	41193											
PCDHGA2	56113	broad.mit.edu;mdanderson.org	37	5	140720557	140720557	+	Silent	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	140720557	C	T	140720557	2	4	678	1	0	0	0	0	0	0	0	1	11561	639	23	1		1	PCDHGA2	5	140720557	Silent	SNP	C	TCGA-KL-8340-01A-11D-2310-10	85609362	140720557	40194703	16	41194											
PCDHGB1	56104	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	140731460	140731460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	140731460	C	T	140731460	3	4	678	1	0	0	0	0	1	0	0	0	11569	768	27	1	1635	1	PCDHGB1	5	140731460	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	10903	140731460	40183800	17	41195											
PCDH12	51294	broad.mit.edu	37	5	141331089	141331089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	G	141331089	T	G	141331089	3	3	678	1	0	0	0	0	1	0	0	0	11517	1841	64	5	619	5	PCDH12	5	141331089	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	599629	141331089	39584171	18	41196											
PHACTR1	221692	broad.mit.edu;bcgsc.ca	37	6	12719071	12719071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	A	12719071	G	A	12719071	3	1	678	1	0	0	0	0	1	0	0	0	11816	1174	41	2	97	2	PHACTR1	6	12719071	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10		12719071	158395996	19	41197											
MUC21	394263	mdanderson.org	37	6	30955202	30955202	+	Missense_Mutation	SNP	C	C	T	rs2429294		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	30955202	C	T	30955202	3	4	678	1	0	0	0	0	1	0	0	0	9984	739	26	2	1256	2	MUC21	6	30955202	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	18236131	30955202	140159865	20	41198											
KIAA1244	57221	ucsc.edu	37	6	138483249	138483249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	G	138483249	A	G	138483249	3	3	678	1	0	0	0	0	1	0	0	0	8224	188	7	3	28	3	KIAA1244	6	138483249	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10	107528047	138483249	32631818	21	41199											
KIAA1244	57221	bcgsc.ca	37	6	138583938	138583938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	138583938	C	T	138583938	3	4	678	1	0	0	0	0	1	0	0	0	8224	797	28	2	1364	2	KIAA1244	6	138583938	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	100689	138583938	32531129	22	41200											
PEX3	8504	broad.mit.edu	37	6	143780275	143780275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	G	143780275	A	G	143780275	3	3	678	1	0	0	0	0	1	0	0	0	11754	63	3	3	133	3	PEX3	6	143780275	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10	5196337	143780275	27334792	23	41201											
TCP1	6950	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160200278	160200278	+	Silent	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	160200278	C	T	160200278	2	4	678	1	0	0	0	0	0	0	0	1	15721	825	29	2		2	TCP1	6	160200278	Silent	SNP	C	TCGA-KL-8340-01A-11D-2310-10	16420003	160200278	10914789	24	41202											
GLI3	2737	broad.mit.edu	37	7	42079819	42079819	+	Silent	SNP	G	G	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	42079819	G	T	42079819	2	4	678	1	0	0	0	0	0	0	0	1	6446	1335	47	4		4	GLI3	7	42079819	Silent	SNP	G	TCGA-KL-8340-01A-11D-2310-10		42079819	117058844	25	41203											
ESRP1	54845	bcgsc.ca	37	8	95683886	95683886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	95683886	T	C	95683886	3	2	678	1	0	0	0	0	1	0	0	0	5260	1725	60	3	1481	3	ESRP1	8	95683886	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10		95683886	50680136	26	41204											
IFNA7	3444	mdanderson.org	37	9	21202040	21202040	+	Missense_Mutation	SNP	G	G	C	rs200751233		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	21202040	G	C	21202040	3	2	678	1	0	0	0	0	1	0	0	0	7549	1319	46	4	448	4	IFNA7	9	21202040	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10		21202040	120011391	27	41205			1	100		2	2	34	N	G_C	5.543064e-05
IFNA7	3444	mdanderson.org	37	9	21202073	21202073	+	Missense_Mutation	SNP	C	C	G	rs76903863	byfrequency	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	G	21202073	C	G	21202073	3	3	678	1	0	0	0	0	1	0	0	0	7549	797	28	4	481	4	IFNA7	9	21202073	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	33	21202073	120011358	28	41206			1	100		2	2	34	N	G_C	5.543064e-05
TAF1L	138474	broad.mit.edu;mdanderson.org	37	9	32632258	32632258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	32632258	T	C	32632258	3	2	678	1	0	0	0	0	1	0	0	0	15535	1667	58	3	2164	3	TAF1L	9	32632258	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	11430185	32632258	108581173	29	41207											
GDA	9615	broad.mit.edu	37	9	74828816	74828816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	74828816	C	T	74828816	3	4	678	1	0	0	0	0	1	0	0	0	6313	759	27	1	505	1	GDA	9	74828816	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	42196558	74828816	66384615	30	41208											
SPTAN1	6709	bcgsc.ca	37	9	131388829	131388829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	131388829	T	C	131388829	3	2	678	1	0	0	0	0	1	0	0	0	15129	1551	54	3	6629	3	SPTAN1	9	131388829	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	56560013	131388829	9824602	31	41209											
SURF4	6836	broad.mit.edu	37	9	136231848	136231848	+	Silent	SNP	T	T	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	136231848	T	C	136231848	2	2	678	1	0	0	0	0	0	0	0	1	15417	1606	56	3		3	SURF4	9	136231848	Silent	SNP	T	TCGA-KL-8340-01A-11D-2310-10	4843019	136231848	4981583	32	41210											
ARL5B	221079	broad.mit.edu	37	10	18957460	18957460	+	Silent	SNP	T	T	C	rs148579997	alternate_allele	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	18957460	T	C	18957460	2	2	678	1	0	0	0	0	0	0	0	1	940	1623	56	3		3	ARL5B	10	18957460	Silent	SNP	T	TCGA-KL-8340-01A-11D-2310-10		18957460	116577287	33	41211											
MASTL	84930	broad.mit.edu;bcgsc.ca	37	10	27447559	27447559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	G	27447559	A	G	27447559	3	3	678	1	0	0	0	0	1	0	0	0	9335	72	3	3	274	3	MASTL	10	27447559	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10	8490099	27447559	108087188	34	41212											
NRAP	4892	broad.mit.edu;bcgsc.ca	37	10	115348753	115348753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	115348753	T	C	115348753	3	2	678	1	0	0	0	0	1	0	0	0	10645	1609	56	3	22	3	NRAP	10	115348753	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	87901194	115348753	20185994	35	41213											
PANX1	24145	broad.mit.edu	37	11	93913343	93913343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	G	93913343	A	G	93913343	3	3	678	1	0	0	0	0	1	0	0	0	11427	72	3	3	1135	3	PANX1	11	93913343	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10		93913343	41093173	36	41214											
OR10G7	390265	broad.mit.edu;mdanderson.org	37	11	123909471	123909471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	123909471	G	T	123909471	3	4	678	1	0	0	0	0	1	0	0	0	10909	962	34	4	701	4	OR10G7	11	123909471	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	29996128	123909471	11097045	37	41215											
DCP1B	196513	broad.mit.edu	37	12	2113565	2113566	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	2113566	-	C	2113565	7	5	678	1	0	1	1	0	0	0	0	0	4301	1770	62	0	1856	0	DCP1B	12	2113565	Frame_Shift_Ins	INS	-	TCGA-KL-8340-01A-11D-2310-10		2113565	131738330	38	41216											
ZNF384	171017	hgsc.bcm.edu	37	12	6777081	6777081	+	Silent	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	6777081	C	T	6777081	2	4	678	1	0	0	0	0	0	0	0	1	17887	796	28	2		2	ZNF384	12	6777081	Silent	SNP	C	TCGA-KL-8340-01A-11D-2310-10	4663516	6777081	127074814	39	41217			2	101		2	2	22	N	C	3.52744e-05
ZNF384	171017	broad.mit.edu	37	12	6777102	6777102	+	Frame_Shift_Del	DEL	C	C	-	rs3835029	bycluster;by1000genomes;alternate_allele	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	-	6777102	C	-	6777102	7	5	678	1	0	1	0	1	0	0	0	0	17887	796	28	0	225	0	ZNF384	12	6777102	Frame_Shift_Del	DEL	C	TCGA-KL-8340-01A-11D-2310-10	21	6777102	127074793	40	41218			2	101		2	2	22	N	C	3.52744e-05
CCNT1	904	broad.mit.edu;bcgsc.ca	37	12	49087549	49087549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	49087549	C	T	49087549	3	4	678	1	0	0	0	0	1	0	0	0	2936	768	27	1	736	1	CCNT1	12	49087549	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	42310447	49087549	84764346	41	41219											
DDX54	79039	ucsc.edu	37	12	113623117	113623117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	113623117	T	C	113623117	3	2	678	1	0	0	0	0	1	0	0	0	4374	1551	54	3	2588	3	DDX54	12	113623117	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	64535568	113623117	20228778	42	41220											
UBC	7316	broad.mit.edu	37	12	125396280	125396280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	A	125396280	G	A	125396280	3	1	678	1	0	0	0	0	1	0	0	0	16854	1087	38	1	23	1	UBC	12	125396280	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	11773163	125396280	8455615	43	41221											
TTC9	23508	mdanderson.org	37	14	71109153	71109153	+	Missense_Mutation	SNP	C	C	G	rs4902834	byfrequency	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	G	71109153	C	G	71109153	3	3	678	1	0	0	0	0	1	0	0	0	16727	623	22	4	309	4	TTC9	14	71109153	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10		71109153	36240387	44	41222											
KCNK10	54207	broad.mit.edu;mdanderson.org;bcgsc.ca	37	14	88652066	88652066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	88652066	C	T	88652066	3	4	678	1	0	0	0	0	1	0	0	0	8066	652	23	1	190	1	KCNK10	14	88652066	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	17542913	88652066	18697474	45	41223											
AQR	9716	broad.mit.edu	37	15	35219284	35219284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	A	35219284	G	A	35219284	3	1	678	1	0	0	0	0	1	0	0	0	835	1319	46	2	3479	2	AQR	15	35219284	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10		35219284	67312108	46	41224											
ZSCAN10	84891	broad.mit.edu	37	16	3139359	3139359	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	-	3139359	A	-	3139359	7	5	678	1	0	1	0	1	0	0	0	0	18239	273	10	0	270	0	ZSCAN10	16	3139359	Frame_Shift_Del	DEL	A	TCGA-KL-8340-01A-11D-2310-10		3139359	87215394	47	41225											
RAP1GAP2	23108	hgsc.bcm.edu	37	17	2901620	2901620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	C	2901620	T	C	2901620	3	2	678	1	0	0	0	0	1	0	0	0	13051	1522	53	3	1204	3	RAP1GAP2	17	2901620	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10		2901620	78293590	48	41226											
PSG3	5671	broad.mit.edu	37	19	43233954	43233954	+	Missense_Mutation	SNP	A	A	T	rs1071709		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	43233954	A	T	43233954	3	4	678	1	0	0	0	0	1	0	0	0	12666	362	13	5	334	5	PSG3	19	43233954	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10		43233954	15895029	49	41227											
AKT1S1	84335	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	19	50374973	50374973	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	A	50374973	T	A	50374973	3	1	678	1	0	0	0	0	1	0	0	0	479	1449	50	5	320	5	AKT1S1	19	50374973	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	7141019	50374973	8754010	50	41228											
TIAM1	7074	broad.mit.edu	37	21	32639202	32639202	+	Silent	SNP	G	G	T	rs139712298	byfrequency;alternate_allele	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	32639202	G	T	32639202	2	4	678	1	0	0	0	0	0	0	0	1	15902	1219	43	4		4	TIAM1	21	32639202	Silent	SNP	G	TCGA-KL-8340-01A-11D-2310-10		32639202	15490693	51	41229											
SSX3	10214	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	48213477	48213477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3	T	48213477	G	T	48213477	3	4	678	1	0	0	0	0	1	0	0	0	15217	1165	41	4	396	4	SSX3	23	48213477	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10		48213477	107057083	52	41230											
ACAP3	116983	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	1235261	1235261	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	1235261	C	G	1235261	3	3	679	1	0	0	0	0	1	0	0	0	120	710	25	4	1880	4	ACAP3	1	1235261	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		1235261	248015360	1	41231											
TAS1R1	80835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	6634949	6634949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	6634949	G	A	6634949	3	1	679	1	0	0	0	0	1	0	0	0	15574	1058	37	1	767	1	TAS1R1	1	6634949	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	5399688	6634949	242615672	2	41232											
PER3	8863	broad.mit.edu	37	1	7887663	7887663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	7887663	T	C	7887663	3	2	679	1	0	0	0	0	1	0	0	0	11738	1667	58	3	2716	3	PER3	1	7887663	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	1252714	7887663	241362958	3	41233											
RERE	473	broad.mit.edu	37	1	8424203	8424203	+	Silent	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	8424203	C	T	8424203	2	4	679	1	0	0	0	0	0	0	0	1	13244	755	27	1		1	RERE	1	8424203	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	536540	8424203	240826418	4	41234											
TCHH	7062	bcgsc.ca	37	1	152082364	152082364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	152082364	C	T	152082364	3	4	679	1	0	0	0	0	1	0	0	0	15712	478	17	2	2506	2	TCHH	1	152082364	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	143658161	152082364	97168257	5	41235											
DARC	2532	mdanderson.org	37	1	159175354	159175354	+	Missense_Mutation	SNP	G	G	A	rs12075	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	159175354	G	A	159175354	3	1	679	1	0	0	0	0	1	0	0	0	4242	1261	44	2	158	2	DARC	1	159175354	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	7092990	159175354	90075267	6	41236											
NUAK2	81788	ucsc.edu;bcgsc.ca	37	1	205274455	205274455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	205274455	T	C	205274455	3	2	679	1	0	0	0	0	1	0	0	0	10720	1667	58	3	1199	3	NUAK2	1	205274455	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	46099101	205274455	43976166	7	41237											
C1orf35	79169	broad.mit.edu	37	1	228289842	228289843	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	228289843	-	C	228289842	7	5	679	1	0	1	1	0	0	0	0	0	2040	1203	42	0	331	0	C1orf35	1	228289842	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	23015387	228289842	20960779	8	41238											
GALNT2	2590	broad.mit.edu;mdanderson.org	37	1	230372423	230372423	+	Silent	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	230372423	T	C	230372423	2	2	679	1	0	0	0	0	0	0	0	1	6220	1606	56	3		3	GALNT2	1	230372423	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	2082581	230372423	18878198	9	41239											
OR2T4	127074	broad.mit.edu	37	1	248524966	248524967	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	248524967	-	G	248524966	7	5	679	1	0	1	1	0	0	0	0	0	11034	117	5	0	86	0	OR2T4	1	248524966	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	18152543	248524966	725655	10	41240	538	2									
OR2T4	127074	bcgsc.ca	37	1	248524967	248524967	+	Missense_Mutation	SNP	A	A	C	rs200915140	alternate_allele	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	248524967	A	C	248524967	3	2	679	1	0	0	0	0	1	0	0	0	11034	101	4	5	87	5	OR2T4	1	248524967	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	1	248524967	725654	11	41241	538	2									
RANBP2	5903	broad.mit.edu	37	2	109383357	109383357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	109383357	A	G	109383357	3	3	679	1	0	0	0	0	1	0	0	0	13041	188	7	3	6440	3	RANBP2	2	109383357	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10		109383357	133816016	12	41242											
POTEE	445582	mdanderson.org	37	2	132021815	132021815	+	Silent	SNP	G	G	A	rs7424053	bycluster	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	132021815	G	A	132021815	2	1	679	1	0	0	0	0	0	0	0	1	12271	1103	39	1		1	POTEE	2	132021815	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	22638458	132021815	111177558	13	41243											
ZDBF2	57683	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	207171302	207171302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	207171302	G	A	207171302	3	1	679	1	0	0	0	0	1	0	0	0	17611	1059	37	1	2060	1	ZDBF2	2	207171302	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	75149487	207171302	36028071	14	41244											
SMARCAL1	50485	broad.mit.edu	37	2	217340073	217340073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	217340073	A	G	217340073	3	3	679	1	0	0	0	0	1	0	0	0	14786	295	11	3	2376	3	SMARCAL1	2	217340073	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	10168771	217340073	25859300	15	41245											
GLB1L	79411	broad.mit.edu;mdanderson.org	37	2	220102299	220102299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	220102299	A	G	220102299	3	3	679	1	0	0	0	0	1	0	0	0	6435	304	11	3	348	3	GLB1L	2	220102299	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	2762226	220102299	23097074	16	41246											
ZCWPW2	152098	mdanderson.org;bcgsc.ca	37	3	28533617	28533617	+	Splice_Site	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	28533617	G	A	28533617	5	1	679	1	0	0	0	0	0	0	1	0	17610	956	33	2	624	2	ZCWPW2	3	28533617	Splice_Site	SNP	G	TCGA-KL-8341-01A-11D-2310-10		28533617	169488813	17	41247											
ZCWPW2	152098	mdanderson.org	37	3	28533652	28533652	+	Silent	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	28533652	G	A	28533652	2	1	679	1	0	0	0	0	0	0	0	1	17610	1335	47	2		2	ZCWPW2	3	28533652	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	35	28533652	169488778	18	41248											
GADL1	339896	broad.mit.edu;mdanderson.org	37	3	30875422	30875422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	30875422	C	T	30875422	3	4	679	1	0	0	0	0	1	0	0	0	6192	826	29	2	612	2	GADL1	3	30875422	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	2341770	30875422	167147008	19	41249											
ERC2	26059	broad.mit.edu;hgsc.bcm.edu	37	3	55984500	55984502	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	-	55984502	CTT	-	55984500	7	5	679	1	0	1	0	1	0	0	0	0	5213	565	20	0	537	0	ERC2	3	55984500	In_Frame_Del	DEL	CTT	TCGA-KL-8341-01A-11D-2310-10	25109078	55984500	142037930	20	41250	539	2									
ERC2	26059	bcgsc.ca	37	3	55984501	55984503	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	-	55984503	CTT	-	55984501	7	5	679	1	0	1	0	1	0	0	0	0	5213	1606	56	0	538	0	ERC2	3	55984501	In_Frame_Del	DEL	CTT	TCGA-KL-8341-01A-11D-2310-10	1	55984501	142037929	21	41251	539	2									
OR5H6	79295	mdanderson.org	37	3	97983602	97983602	+	Silent	SNP	T	T	C	rs75354046	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	97983602	T	C	97983602	2	2	679	1	0	0	0	0	0	0	0	1	11170	1771	62	3		3	OR5H6	3	97983602	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	41999101	97983602	100038828	22	41252											
HEG1	57493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	124692706	124692706	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	124692706	C	G	124692706	3	3	679	1	0	0	0	0	1	0	0	0	7051	913	32	4	288	4	HEG1	3	124692706	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	26709104	124692706	73329724	23	41253											
PIK3CB	5291	broad.mit.edu	37	3	138433374	138433374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	138433374	G	T	138433374	3	4	679	1	0	0	0	0	1	0	0	0	11921	1145	40	4	2036	4	PIK3CB	3	138433374	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	13740668	138433374	59589056	24	41254											
CPA3	1359	broad.mit.edu;mdanderson.org	37	3	148583133	148583133	+	Silent	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	148583133	T	C	148583133	2	2	679	1	0	0	0	0	0	0	0	1	3793	1538	54	3		3	CPA3	3	148583133	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	10149759	148583133	49439297	25	41255											
MUC4	4585	mdanderson.org	37	3	195507502	195507502	+	Missense_Mutation	SNP	A	A	G	rs113781173	alternate_allele	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	195507502	A	G	195507502	3	3	679	1	0	0	0	0	1	0	0	0	9985	72	3	3		3	MUC4	3	195507502	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	46924369	195507502	2514928	26	41256											
GAK	2580	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	843563	843563	+	Splice_Site	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	843563	C	T	843563	5	4	679	1	0	0	0	0	0	0	1	0	6202	695	24	2	105	2	GAK	4	843563	Splice_Site	SNP	C	TCGA-KL-8341-01A-11D-2310-10		843563	190310713	27	41257											
ENAM	10117	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	4	71509879	71509879	+	Silent	SNP	C	C	T	rs143333113	by1000genomes	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	71509879	C	T	71509879	2	4	679	1	0	0	0	0	0	0	0	1	5114	535	19	1		1	ENAM	4	71509879	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	70666316	71509879	119644397	28	41258											
NDST4	64579	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	115998171	115998171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	115998171	G	A	115998171	3	1	679	1	0	0	0	0	1	0	0	0	10265	1057	37	1	2648	1	NDST4	4	115998171	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	44488292	115998171	75156105	29	41259											
MAML3	55534	broad.mit.edu	37	4	140811108	140811109	+	In_Frame_Ins	INS	-	-	TGT	rs66794549	alternate_allele	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	TGT	140811109	-	TGT	140811108	7	5	679	1	0	1	1	0	0	0	0	0	9214	796	28	0	1942	0	MAML3	4	140811108	In_Frame_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	24812937	140811108	50343168	30	41260											
DEPDC1B	55789	broad.mit.edu	37	5	59894911	59894911	+	Silent	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	59894911	T	C	59894911	2	2	679	1	0	0	0	0	0	0	0	1	4442	1722	60	3		3	DEPDC1B	5	59894911	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10		59894911	121020349	31	41261											
NR2F1	7025	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	92923831	92923831	+	Silent	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	92923831	G	A	92923831	2	1	679	1	0	0	0	0	0	0	0	1	10634	1074	38	1		1	NR2F1	5	92923831	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	33028920	92923831	87991429	32	41262											
APC	324	broad.mit.edu	37	5	112155000	112155001	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	112155001	-	G	112155000	7	5	679	1	0	1	1	0	0	0	0	0	763	188	7	0	1305	0	APC	5	112155000	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	19231169	112155000	68760260	33	41263											
PCDHB4	56131	mdanderson.org	37	5	140503002	140503002	+	Silent	SNP	C	C	A	rs61741603	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	140503002	C	A	140503002	2	1	679	1	0	0	0	0	0	0	0	1	11551	581	21	4		4	PCDHB4	5	140503002	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	28348002	140503002	40412258	34	41264											
PCDH1	5097	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	141236865	141236865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	141236865	G	A	141236865	3	1	679	1	0	0	0	0	1	0	0	0	11513	1087	38	1	450	1	PCDH1	5	141236865	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	733863	141236865	39678395	35	41265											
RNF145	153830	mdanderson.org	37	5	158595995	158595995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	158595995	A	G	158595995	3	3	679	1	0	0	0	0	1	0	0	0	13460	43	2	3	1000	3	RNF145	5	158595995	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	17359130	158595995	22319265	36	41266											
GABRP	2568	broad.mit.edu	37	5	170239019	170239019	+	Silent	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	170239019	C	T	170239019	2	4	679	1	0	0	0	0	0	0	0	1	6181	581	21	2		2	GABRP	5	170239019	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	11643024	170239019	10676241	37	41267											
OR5V1	81696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	29323612	29323612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	29323612	C	A	29323612	3	1	679	1	0	0	0	0	1	0	0	0	11191	826	29	4	607	4	OR5V1	6	29323612	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		29323612	141791455	38	41268											
HLA-G	3135	mdanderson.org	37	6	29797430	29797430	+	Silent	SNP	G	G	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	29797430	G	T	29797430	2	4	679	1	0	0	0	0	0	0	0	1	7219	1306	46	4		4	HLA-G	6	29797430	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	473818	29797430	141317637	39	41269											
KPNA5	3841	broad.mit.edu;mdanderson.org	37	6	117013533	117013533	+	Silent	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	117013533	A	G	117013533	2	3	679	1	0	0	0	0	0	0	0	1	8440	98	4	3		3	KPNA5	6	117013533	Silent	SNP	A	TCGA-KL-8341-01A-11D-2310-10	87216103	117013533	54101534	40	41270											
MCM9	254394	bcgsc.ca	37	6	119136171	119136171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	119136171	T	C	119136171	3	2	679	1	0	0	0	0	1	0	0	0	9401	1566	54	3		3	MCM9	6	119136171	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	2122638	119136171	51978896	41	41271											
SYNE1	23345	broad.mit.edu;bcgsc.ca	37	6	152642498	152642498	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	152642498	G	A	152642498	4	1	679	1	0	0	0	0	0	1	0	0	15457	1124	39	1	10607	1	SYNE1	6	152642498	Nonsense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	33506327	152642498	18472569	42	41272											
SLC29A4	222962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	5334542	5334542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	5334542	C	T	5334542	3	4	679	1	0	0	0	0	1	0	0	0	14550	536	19	1	614	1	SLC29A4	7	5334542	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		5334542	153804121	43	41273											
TNRC18	84629	hgsc.bcm.edu	37	7	5428642	5428642	+	Silent	SNP	G	G	A	rs144662045	by1000genomes	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	5428642	G	A	5428642	2	1	679	1	0	0	0	0	0	0	0	1	16351	1335	47	2		2	TNRC18	7	5428642	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	94100	5428642	153710021	44	41274											
POM121	9883	mdanderson.org	37	7	72412591	72412591	+	Missense_Mutation	SNP	G	G	A	rs2530522		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	72412591	G	A	72412591	3	1	679	1	0	0	0	0	1	0	0	0	12246	1203	42	2	1302	2	POM121	7	72412591	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	66983949	72412591	86726072	45	41275											
MUC17	140453	hgsc.bcm.edu;mdanderson.org	37	7	100681510	100681510	+	Silent	SNP	T	T	C	rs116767656	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	100681510	T	C	100681510	2	2	679	1	0	0	0	0	0	0	0	1	9981	1596	56	3		3	MUC17	7	100681510	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	28268919	100681510	58457153	46	41276											
MUC17	140453	mdanderson.org	37	7	100681951	100681951	+	Silent	SNP	C	C	A	rs141774606		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	100681951	C	A	100681951	2	1	679	1	0	0	0	0	0	0	0	1	9981	581	21	4		4	MUC17	7	100681951	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	441	100681951	58456712	47	41277											
TAS2R4	50832	mdanderson.org	37	7	141478800	141478800	+	Missense_Mutation	SNP	G	G	A	rs2234002	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	141478800	G	A	141478800	3	1	679	1	0	0	0	0	1	0	0	0	15589	1029	36	2	514	2	TAS2R4	7	141478800	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	40796849	141478800	17659863	48	41278											
TAS2R38	5726	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	141672852	141672852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	141672852	G	A	141672852	3	1	679	1	0	0	0	0	1	0	0	0	15587	942	33	2	367	2	TAS2R38	7	141672852	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	194052	141672852	17465811	49	41279											
PRSS1	5644	mdanderson.org	37	7	142460752	142460752	+	Missense_Mutation	SNP	C	C	G	rs140793689	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	142460752	C	G	142460752	3	3	679	1	0	0	0	0	1	0	0	0	12624	479	17	4	643	4	PRSS1	7	142460752	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	787900	142460752	16677911	50	41280											
ADAM28	10863	broad.mit.edu;ucsc.edu	37	8	24170913	24170913	+	Silent	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	24170913	T	C	24170913	2	2	679	1	0	0	0	0	0	0	0	1	246	1664	58	3		3	ADAM28	8	24170913	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10		24170913	122193109	51	41281											
PABPC1	26986	broad.mit.edu	37	8	101733701	101733702	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	101733702	-	A	101733701	7	5	679	1	0	1	1	0	0	0	0	0	11370	1164	41	0	1855	0	PABPC1	8	101733701	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	77562788	101733701	44630321	52	41282	540	2	1	102		3	2	23	N	T_-	8.527673e-05
PABPC1	26986	broad.mit.edu	37	8	101733702	101733703	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	101733703	-	G	101733702	7	5	679	1	0	1	1	0	0	0	0	0	11370	333	12	0	1856	0	PABPC1	8	101733702	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	1	101733702	44630320	53	41283	540	2	1	102		3	2	23	N	T_-	8.527673e-05
PABPC1	26986	broad.mit.edu	37	8	101733723	101733723	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	-	101733723	T	-	101733723	7	5	679	1	0	1	0	1	0	0	0	0	11370	1609	56	0	1877	0	PABPC1	8	101733723	Frame_Shift_Del	DEL	T	TCGA-KL-8341-01A-11D-2310-10	21	101733723	44630299	54	41284			1	102		3	2	23	N	T_-	8.527673e-05
UBR5	51366	mdanderson.org;bcgsc.ca	37	8	103277497	103277497	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	103277497	G	A	103277497	4	1	679	1	0	0	0	0	0	1	0	0	16917	1124	39	1	995	1	UBR5	8	103277497	Nonsense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	1543774	103277497	43086525	55	41285											
KLF10	7071	mdanderson.org	37	8	103663512	103663512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	103663512	A	G	103663512	3	3	679	1	0	0	0	0	1	0	0	0	8345	43	2	3	402	3	KLF10	8	103663512	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	386015	103663512	42700510	56	41286											
RIMS2	9699	broad.mit.edu	37	8	104513292	104513292	+	Splice_Site	DEL	T	T	-	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	-	104513292	T	-	104513292	8	5	679	1	0	1	0	1	0	0	1	0	13381	1652	57	0	180	0	RIMS2	8	104513292	Splice_Site	DEL	T	TCGA-KL-8341-01A-11D-2310-10	849780	104513292	41850730	57	41287											
LRP12	29967	ucsc.edu;bcgsc.ca	37	8	105510296	105510296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	105510296	C	T	105510296	3	4	679	1	0	0	0	0	1	0	0	0	8961	835	29	2	2107	2	LRP12	8	105510296	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	997004	105510296	40853726	58	41288											
HAS2	3037	broad.mit.edu	37	8	122626903	122626903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	122626903	A	G	122626903	3	3	679	1	0	0	0	0	1	0	0	0	6969	43	2	3	557	3	HAS2	8	122626903	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	17116607	122626903	23737119	59	41289											
ZC3H3	23144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	144550602	144550602	+	Silent	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	144550602	G	A	144550602	2	1	679	1	0	0	0	0	0	0	0	1	17581	1074	38	1		1	ZC3H3	8	144550602	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	21923699	144550602	1813420	60	41290											
FAM22G	441457	broad.mit.edu	37	9	99701229	99701231	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	-	99701231	CTT	-	99701229	7	5	679	1	0	1	0	1	0	0	0	0	5550	681	24	0	2050	0	FAM22G	9	99701229	In_Frame_Del	DEL	CTT	TCGA-KL-8341-01A-11D-2310-10		99701229	41512202	61	41291											
OR13C2	392376	broad.mit.edu	37	9	107367738	107367738	+	Silent	SNP	G	G	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	107367738	G	C	107367738	2	2	679	1	0	0	0	0	0	0	0	1	10941	1219	43	4		4	OR13C2	9	107367738	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	7666509	107367738	33845693	62	41292											
KCNMA1	3778	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	78649263	78649263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	78649263	C	A	78649263	3	1	679	1	0	0	0	0	1	0	0	0	8080	855	30	4	340	4	KCNMA1	10	78649263	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		78649263	56885484	63	41293											
MUC6	4588	mdanderson.org	37	11	1018031	1018031	+	Silent	SNP	G	G	A	rs10751678	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	1018031	G	A	1018031	2	1	679	1	0	0	0	0	0	0	0	1	9987	1335	47	2		2	MUC6	11	1018031	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10		1018031	133988485	64	41294											
MUC2	4583	mdanderson.org	37	11	1092459	1092459	+	Silent	SNP	C	C	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	1092459	C	A	1092459	2	1	679	1	0	0	0	0	0	0	0	1	9982	581	21	4		4	MUC2	11	1092459	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	74428	1092459	133914057	65	41295											
MUC2	4583	mdanderson.org	37	11	1092953	1092953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	1092953	C	T	1092953	3	4	679	1	0	0	0	0	1	0	0	0	9982	536	19	1	4890	1	MUC2	11	1092953	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	494	1092953	133913563	66	41296											
OR2AG1	144125	mdanderson.org	37	11	6806963	6806963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	6806963	A	G	6806963	3	3	679	1	0	0	0	0	1	0	0	0	10991	304	11	3	697	3	OR2AG1	11	6806963	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	5714010	6806963	128199553	67	41297											
PARVA	55742	broad.mit.edu	37	11	12399324	12399324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	12399324	A	G	12399324	3	3	679	1	0	0	0	0	1	0	0	0	11475	131	5	3	132	3	PARVA	11	12399324	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	5592361	12399324	122607192	68	41298											
RASSF10	644943	broad.mit.edu	37	11	13031416	13031416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	13031416	G	A	13031416	3	1	679	1	0	0	0	0	1	0	0	0	13098	1087	38	1	623	1	RASSF10	11	13031416	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	632092	13031416	121975100	69	41299											
OR5AK2	390181	broad.mit.edu;ucsc.edu	37	11	56756940	56756940	+	Silent	SNP	T	T	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	56756940	T	A	56756940	2	1	679	1	0	0	0	0	0	0	0	1	11149	1771	62	5		5	OR5AK2	11	56756940	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	43725524	56756940	78249576	70	41300	541	2									
OR5AK2	390181	bcgsc.ca	37	11	56756941	56756941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	56756941	C	T	56756941	3	4	679	1	0	0	0	0	1	0	0	0	11149	913	32	2	555	2	OR5AK2	11	56756941	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	1	56756941	78249575	71	41301	541	2									
UCP2	7351	ucsc.edu;mdanderson.org;bcgsc.ca	37	11	73686146	73686146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	73686146	C	T	73686146	3	4	679	1	0	0	0	0	1	0	0	0	16943	768	27	1	97	1	UCP2	11	73686146	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	16929205	73686146	61320370	72	41302											
DLG2	1740	broad.mit.edu	37	11	84996301	84996301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	84996301	A	G	84996301	3	3	679	1	0	0	0	0	1	0	0	0	4557	72	3	3	3083	3	DLG2	11	84996301	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	11310155	84996301	50010215	73	41303											
APOA1	335	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	116707862	116707862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	116707862	G	A	116707862	3	1	679	1	0	0	0	0	1	0	0	0	780	1057	37	1	756	1	APOA1	11	116707862	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	31711561	116707862	18298654	74	41304											
KDM5A	5927	broad.mit.edu;mdanderson.org	37	12	416696	416696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	416696	T	C	416696	3	2	679	1	0	0	0	0	1	0	0	0	8140	1783	62	3	1242	3	KDM5A	12	416696	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10		416696	133435199	75	41305											
KRT2	3849	broad.mit.edu	37	12	53045623	53045624	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	GCC	53045624	-	GCC	53045623	7	5	679	1	0	1	1	0	0	0	0	0	8464	72	3	0	1651	0	KRT2	12	53045623	In_Frame_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	52628927	53045623	80806272	76	41306											
SRGAP1	57522	hgsc.bcm.edu;ucsc.edu	37	12	64436722	64436722	+	Silent	SNP	T	T	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	64436722	T	A	64436722	2	1	679	1	0	0	0	0	0	0	0	1	15157	1567	55	5		5	SRGAP1	12	64436722	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	11391099	64436722	69415173	77	41307											
SLC35E3	55508	broad.mit.edu;mdanderson.org	37	12	69140526	69140526	+	Silent	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	69140526	G	A	69140526	2	1	679	1	0	0	0	0	0	0	0	1	14599	933	33	2		2	SLC35E3	12	69140526	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	4703804	69140526	64711369	78	41308											
CEP290	80184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	88444148	88444148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	88444148	C	T	88444148	3	4	679	1	0	0	0	0	1	0	0	0	3255	922	32	2	255	2	CEP290	12	88444148	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	19303622	88444148	45407747	79	41309											
ATP12A	479	broad.mit.edu;mdanderson.org;bcgsc.ca	37	13	25255781	25255781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	25255781	T	C	25255781	3	2	679	1	0	0	0	0	1	0	0	0	1122	1638	57	3	97	3	ATP12A	13	25255781	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10		25255781	89914097	80	41310											
FNDC3A	22862	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	49771038	49771038	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	49771038	A	T	49771038	3	4	679	1	0	0	0	0	1	0	0	0	5976	333	12	5	2337	5	FNDC3A	13	49771038	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	24515257	49771038	65398840	81	41311											
OR4M1	441670	broad.mit.edu;mdanderson.org	37	14	20248894	20248894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	20248894	G	A	20248894	3	1	679	1	0	0	0	0	1	0	0	0	11082	1058	37	1	415	1	OR4M1	14	20248894	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10		20248894	87100646	82	41312											
OR4K5	79317	mdanderson.org	37	14	20389305	20389305	+	Silent	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	20389305	T	C	20389305	2	2	679	1	0	0	0	0	0	0	0	1	11080	1432	50	3		3	OR4K5	14	20389305	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	140411	20389305	86960235	83	41313											
OR4K17	390436	broad.mit.edu	37	14	20586424	20586424	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	-	20586424	T	-	20586424	7	5	679	1	0	1	0	1	0	0	0	0	11078	1609	56	0	861	0	OR4K17	14	20586424	Frame_Shift_Del	DEL	T	TCGA-KL-8341-01A-11D-2310-10	197119	20586424	86763116	84	41314	542	4									
OR4K17	390436	bcgsc.ca	37	14	20586425	20586425	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	-	20586425	T	-	20586425	7	5	679	1	0	1	0	1	0	0	0	0	11078	1841	64	0	862	0	OR4K17	14	20586425	Frame_Shift_Del	DEL	T	TCGA-KL-8341-01A-11D-2310-10	1	20586425	86763115	85	41315	542	4									
OR4K17	390436	broad.mit.edu	37	14	20586433	20586434	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	20586434	-	T	20586433	7	5	679	1	0	1	1	0	0	0	0	0	11078	217	8	0	870	0	OR4K17	14	20586433	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	8	20586433	86763107	86	41316	542	4									
OR4K17	390436	bcgsc.ca	37	14	20586434	20586435	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	20586435	-	T	20586434	7	5	679	1	0	1	1	0	0	0	0	0	11078	1493	52	0	871	0	OR4K17	14	20586434	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	1	20586434	86763106	87	41317	542	4									
MYH7	4625	mdanderson.org	37	14	23885477	23885477	+	Silent	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	23885477	C	T	23885477	2	4	679	1	0	0	0	0	0	0	0	1	10046	581	21	2		2	MYH7	14	23885477	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	3299043	23885477	83464063	88	41318											
MYH7	4625	mdanderson.org	37	14	23886718	23886718	+	Silent	SNP	G	G	A	rs182311329		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	23886718	G	A	23886718	2	1	679	1	0	0	0	0	0	0	0	1	10046	1049	37	1		1	MYH7	14	23886718	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	1241	23886718	83462822	89	41319	543	2									
MYH7	4625	mdanderson.org	37	14	23886724	23886724	+	Silent	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	23886724	C	T	23886724	2	4	679	1	0	0	0	0	0	0	0	1	10046	854	30	2		2	MYH7	14	23886724	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	6	23886724	83462816	90	41320	543	2									
AHNAK2	113146	mdanderson.org	37	14	105408107	105408107	+	Missense_Mutation	SNP	G	G	T	rs200549975		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	105408107	G	T	105408107	3	4	679	1	0	0	0	0	1	0	0	0	415	1000	35	4	3710	4	AHNAK2	14	105408107	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	81521383	105408107	1941433	91	41321			2	103		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	14	105408140	105408140	+	Missense_Mutation	SNP	C	C	G	rs201663085		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	105408140	C	G	105408140	3	3	679	1	0	0	0	0	1	0	0	0	415	864	30	4	3743	4	AHNAK2	14	105408140	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	33	105408140	1941400	92	41322			2	103		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	14	105415160	105415160	+	Missense_Mutation	SNP	C	C	G	rs201874096		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	105415160	C	G	105415160	3	3	679	1	0	0	0	0	1	0	0	0	415	536	19	4	10763	4	AHNAK2	14	105415160	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	7020	105415160	1934380	93	41323	544	3	2	103		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	14	105415166	105415166	+	Missense_Mutation	SNP	C	C	T	rs201667039		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	105415166	C	T	105415166	3	4	679	1	0	0	0	0	1	0	0	0	415	768	27	1	10769	1	AHNAK2	14	105415166	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	6	105415166	1934374	94	41324	544	3	2	103		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	14	105415171	105415171	+	Missense_Mutation	SNP	A	A	G	rs201552064		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	105415171	A	G	105415171	3	3	679	1	0	0	0	0	1	0	0	0	415	72	3	3	10774	3	AHNAK2	14	105415171	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	5	105415171	1934369	95	41325	544	3	2	103		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	14	105415196	105415196	+	Missense_Mutation	SNP	T	T	C	rs200598682		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	105415196	T	C	105415196	3	2	679	1	0	0	0	0	1	0	0	0	415	1667	58	3	10799	3	AHNAK2	14	105415196	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	25	105415196	1934344	96	41326	545	2	2	103		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	14	105415200	105415200	+	Silent	SNP	G	G	C	rs10145566	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	105415200	G	C	105415200	2	2	679	1	0	0	0	0	0	0	0	1	415	1277	45	4		4	AHNAK2	14	105415200	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	4	105415200	1934340	97	41327	545	2	2	103		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	14	105415737	105415737	+	Silent	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	105415737	C	T	105415737	2	4	679	1	0	0	0	0	0	0	0	1	415	680	24	2		2	AHNAK2	14	105415737	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	537	105415737	1933803	98	41328			2	103		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	14	105415748	105415748	+	Missense_Mutation	SNP	G	G	A	rs118171013	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	105415748	G	A	105415748	3	1	679	1	0	0	0	0	1	0	0	0	415	1203	42	2	11351	2	AHNAK2	14	105415748	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	11	105415748	1933792	99	41329			2	103		9	6	7642	N	T_G_C_A	1.851059e-10
CAPN3	825	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	42684852	42684852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	42684852	C	A	42684852	3	1	679	1	0	0	0	0	1	0	0	0	2630	827	29	4	1039	4	CAPN3	15	42684852	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		42684852	59846540	100	41330											
ZFP106	64397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	42742931	42742931	+	Silent	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	42742931	C	T	42742931	2	4	679	1	0	0	0	0	0	0	0	1	17649	871	31	1		1	ZFP106	15	42742931	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	58079	42742931	59788461	101	41331											
SLC12A1	6557	broad.mit.edu;mdanderson.org	37	15	48518686	48518686	+	Silent	SNP	C	C	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	48518686	C	G	48518686	2	3	679	1	0	0	0	0	0	0	0	1	14395	813	29	4		4	SLC12A1	15	48518686	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	5775755	48518686	54012706	102	41332											
DTWD1	56986	hgsc.bcm.edu	37	15	49926993	49926994	+	Splice_Site	INS	-	-	A	rs111446752		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	49926994	-	A	49926993	8	5	679	1	0	1	1	0	0	0	1	0	4793	1652	57	0	679	0	DTWD1	15	49926993	Splice_Site	INS	-	TCGA-KL-8341-01A-11D-2310-10	1408307	49926993	52604399	103	41333											
FAM81A	145773	mdanderson.org	37	15	59808946	59808946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	G	59808946	A	G	59808946	3	3	679	1	0	0	0	0	1	0	0	0	5635	63	3	3	915	3	FAM81A	15	59808946	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	9881953	59808946	42722446	104	41334											
VPS13C	54832	hgsc.bcm.edu	37	15	62261606	62261606	+	Silent	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	62261606	G	A	62261606	2	1	679	1	0	0	0	0	0	0	0	1	17203	933	33	2		2	VPS13C	15	62261606	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	2452660	62261606	40269786	105	41335											
HERC1	8925	mdanderson.org	37	15	64010819	64010819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	64010819	T	C	64010819	3	2	679	1	0	0	0	0	1	0	0	0	7064	1609	56	3	10885	3	HERC1	15	64010819	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	1749213	64010819	38520573	106	41336											
SNX1	6642	broad.mit.edu	37	15	64426911	64426912	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	64426912	-	A	64426911	7	5	679	1	0	1	1	0	0	0	0	0	14893	595	21	0	1316	0	SNX1	15	64426911	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	416092	64426911	38104481	107	41337											
FAM174B	400451	broad.mit.edu	37	15	93173567	93173567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	93173567	T	C	93173567	3	2	679	1	0	0	0	0	1	0	0	0	5500	1609	56	3	134	3	FAM174B	15	93173567	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	28746656	93173567	9357825	108	41338											
PDIA2	64714	mdanderson.org	37	16	334732	334732	+	Silent	SNP	C	C	T	rs45593734	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	334732	C	T	334732	2	4	679	1	0	0	0	0	0	0	0	1	11675	535	19	1		1	PDIA2	16	334732	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10		334732	90020021	109	41339											
C16orf11	146325	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	16	613379	613379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	613379	C	T	613379	3	4	679	1	0	0	0	0	1	0	0	0	1812	759	27	1	87	1	C16orf11	16	613379	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	278647	613379	89741374	110	41340											
TSC2	7249	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	2113034	2113034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	2113034	A	T	2113034	3	4	679	1	0	0	0	0	1	0	0	0	16618	217	8	5	1473	5	TSC2	16	2113034	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	1499655	2113034	88241719	111	41341											
ABCC6	368	ucsc.edu;mdanderson.org;bcgsc.ca	37	16	16251599	16251599	+	Missense_Mutation	SNP	C	C	T	rs2238472	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	16251599	C	T	16251599	3	4	679	1	0	0	0	0	1	0	0	0	57	652	23	1	728	1	ABCC6	16	16251599	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	14138565	16251599	74103154	112	41342											
ARHGAP17	55114	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	24950855	24950855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	24950855	G	T	24950855	3	4	679	1	0	0	0	0	1	0	0	0	867	1368	48	4	1107	4	ARHGAP17	16	24950855	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	8699256	24950855	65403898	113	41343											
SLC7A6	9057	broad.mit.edu;mdanderson.org	37	16	68325151	68325151	+	Silent	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	68325151	G	A	68325151	2	1	679	1	0	0	0	0	0	0	0	1	14714	1277	45	2		2	SLC7A6	16	68325151	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	43374296	68325151	22029602	114	41344											
CLEC18C	283971	mdanderson.org	37	16	70211266	70211266	+	Silent	SNP	G	G	A	rs142678589		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	70211266	G	A	70211266	2	1	679	1	0	0	0	0	0	0	0	1	3506	1306	46	2		2	CLEC18C	16	70211266	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	1886115	70211266	20143487	115	41345											
PKD1L2	114780	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	81242140	81242140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	81242140	G	A	81242140	3	1	679	1	0	0	0	0	1	0	0	0	11972	1116	39	1	6892	1	PKD1L2	16	81242140	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	11030874	81242140	9112613	116	41346											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	7577064	7577064	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	7577064	T	A	7577064	4	1	679	1	0	0	0	0	0	1	0	0	16393	1792	62	5	412	5	TP53	17	7577064	Nonsense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10		7577064	73618146	117	41347											
CCDC144B	284047	broad.mit.edu	37	17	18498496	18498497	+	RNA	INS	-	-	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	18498497	-	A	18498496	6	5	679	0	1	1	1	0	0	0	0	0	2780	1594	55	0		0	CCDC144B	17	18498496	RNA	INS	-	TCGA-KL-8341-01A-11D-2310-10	10921432	18498496	62696714	118	41348											
KCNH4	23415	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	40321548	40321548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	40321548	G	A	40321548	3	1	679	1	0	0	0	0	1	0	0	0	8041	971	34	2	1548	2	KCNH4	17	40321548	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	21823052	40321548	40873662	119	41349											
PDK2	5164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	48184157	48184157	+	Splice_Site	SNP	G	G	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	48184157	G	C	48184157	5	2	679	1	0	0	0	0	0	0	1	0	11683	985	34	4	535	4	PDK2	17	48184157	Splice_Site	SNP	G	TCGA-KL-8341-01A-11D-2310-10	7862609	48184157	33011053	120	41350											
MYO5B	4645	mdanderson.org	37	18	47364066	47364067	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	AT	47364067	GC	AT	47364066	3	1	679	1	0	0	0	0	1	0	0	0	10086	1195	42	2	603	2	MYO5B	18	47364066	Missense_Mutation	DNP	GC	TCGA-KL-8341-01A-11D-2310-10		47364066	30713182	121	41351											
LDLR	3949	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	11210912	11210912	+	Nonsense_Mutation	SNP	C	C	A	rs2228671	bycluster;byfrequency;by1000genomes	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	11210912	C	A	11210912	4	1	679	1	0	0	0	0	0	1	0	0	8711	776	27	4	87	4	LDLR	19	11210912	Nonsense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		11210912	47918071	122	41352											
LILRA1	11024	mdanderson.org	37	19	55107397	55107397	+	Missense_Mutation	SNP	G	G	A	rs149029653	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	55107397	G	A	55107397	3	1	679	1	0	0	0	0	1	0	0	0	8791	1087	38	1	973	1	LILRA1	19	55107397	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	43896485	55107397	4021586	123	41353											
SLC9A8	23315	hgsc.bcm.edu;bcgsc.ca	37	20	48467342	48467342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	48467342	T	C	48467342	3	2	679	1	0	0	0	0	1	0	0	0	14733	1769	61	3		3	SLC9A8	20	48467342	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10		48467342	14558178	124	41354											
CABIN1	23523	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	24472140	24472140	+	Silent	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	24472140	C	T	24472140	2	4	679	1	0	0	0	0	0	0	0	1	2530	842	30	2		2	CABIN1	22	24472140	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10		24472140	26832426	125	41355											
SYN3	8224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	33327400	33327400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	33327400	C	T	33327400	3	4	679	1	0	0	0	0	1	0	0	0	15454	536	19	1	1350	1	SYN3	22	33327400	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	8855260	33327400	17977166	126	41356											
MAPK11	5600	broad.mit.edu	37	22	50703803	50703804	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	50703804	-	C	50703803	7	5	679	1	0	1	1	0	0	0	0	0	9280	1551	54	0	140	0	MAPK11	22	50703803	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	17376403	50703803	600763	127	41357											
TAF9B	51616	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	77395087	77395087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	77395087	G	A	77395087	3	1	679	1	0	0	0	0	1	0	0	0	15548	1203	42	2	761	2	TAF9B	23	77395087	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10		77395087	77875473	128	41358											
MAGEC1	9947	mdanderson.org	37	X	140994320	140994320	+	Missense_Mutation	SNP	G	G	T	rs7063168	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	T	140994320	G	T	140994320	3	4	679	1	0	0	0	0	1	0	0	0	9187	1232	43	4	1136	4	MAGEC1	23	140994320	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	63599233	140994320	14276240	129	41359											
IKBKG	8517	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	X	153770612	153770612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	C	153770612	G	C	153770612	3	2	679	1	0	0	0	0	1	0	0	0	7620	942	33	4	136	4	IKBKG	23	153770612	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	12776292	153770612	1499948	130	41360											
ZFY	7544	broad.mit.edu;mdanderson.org;bcgsc.ca	37	Y	2829115	2829115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e	A	2829115	G	A	2829115	3	1	679	1	0	0	0	0	1	0	0	0	17674	1188	41	2	68	2	ZFY	24	2829115	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10		2829115	56544451	131	41361											
CPSF3L	54973	broad.mit.edu	37	1	1254710	1254710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	1254710	T	C	1254710	3	2	680	1	0	0	0	0	1	0	0	0	3829	1609	56	3	1463	3	CPSF3L	1	1254710	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10		1254710	247995911	1	41362											
GALE	2582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	24122442	24122442	+	Silent	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	24122442	G	A	24122442	2	1	680	1	0	0	0	0	0	0	0	1	6209	987	35	2		2	GALE	1	24122442	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10	22867732	24122442	225128179	2	41363											
CNKSR1	10256	broad.mit.edu	37	1	26509852	26509852	+	Nonsense_Mutation	SNP	C	C	T	rs200619424		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	26509852	C	T	26509852	4	4	680	1	0	0	0	0	0	1	0	0	3608	644	23	1	730	1	CNKSR1	1	26509852	Nonsense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	2387410	26509852	222740769	3	41364											
RNF115	27246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	145687066	145687066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	145687066	G	A	145687066	3	1	680	1	0	0	0	0	1	0	0	0	13443	1029	36	2	788	2	RNF115	1	145687066	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	119177214	145687066	103563555	4	41365											
BCAN	63827	ucsc.edu;bcgsc.ca	37	1	156626107	156626107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	156626107	G	A	156626107	3	1	680	1	0	0	0	0	1	0	0	0	1345	1232	43	2	2080	2	BCAN	1	156626107	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	10939041	156626107	92624514	5	41366											
OR2B11	127623	ucsc.edu	37	1	247615262	247615262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	247615262	A	G	247615262	3	3	680	1	0	0	0	0	1	0	0	0	10995	246	9	3	933	3	OR2B11	1	247615262	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	90989155	247615262	1635359	6	41367											
AFF3	3899	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	100167950	100167950	+	Missense_Mutation	SNP	C	C	T	rs138104794		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	100167950	C	T	100167950	3	4	680	1	0	0	0	0	1	0	0	0	358	768	27	1	17	1	AFF3	2	100167950	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		100167950	143031423	7	41368											
RBMS1	5937	broad.mit.edu;hgsc.bcm.edu	37	2	161135123	161135123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	161135123	G	T	161135123	3	4	680	1	0	0	0	0	1	0	0	0	13161	1232	43	4	234	4	RBMS1	2	161135123	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	60967173	161135123	82064250	8	41369											
USP19	10869	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	49153200	49153200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	49153200	G	T	49153200	3	4	680	1	0	0	0	0	1	0	0	0	17062	1232	43	4	2684	4	USP19	3	49153200	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10		49153200	148869230	9	41370											
GHSR	2693	broad.mit.edu	37	3	172165985	172165985	+	Silent	SNP	C	C	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	172165985	C	T	172165985	2	4	680	1	0	0	0	0	0	0	0	1	6382	796	28	2		2	GHSR	3	172165985	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	123012785	172165985	25856445	10	41371											
TMEM41A	90407	ucsc.edu	37	3	185214712	185214712	+	Silent	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	185214712	T	C	185214712	2	2	680	1	0	0	0	0	0	0	0	1	16176	1538	54	3		3	TMEM41A	3	185214712	Silent	SNP	T	TCGA-KL-8342-01A-11D-2310-10	13048727	185214712	12807718	11	41372											
ZCCHC4	29063	broad.mit.edu	37	4	25353254	25353254	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	-	25353254	T	-	25353254	7	5	680	1	0	1	0	1	0	0	0	0	17602	1500	52	0	984	0	ZCCHC4	4	25353254	Frame_Shift_Del	DEL	T	TCGA-KL-8342-01A-11D-2310-10		25353254	165801022	12	41373											
FGA	2243	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	155506781	155506781	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	155506781	G	C	155506781	3	2	680	1	0	0	0	0	1	0	0	0	5837	962	34	4	852	4	FGA	4	155506781	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	130153527	155506781	35647495	13	41374											
GUCY1A3	2982	broad.mit.edu;mdanderson.org	37	4	156643251	156643251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	156643251	G	A	156643251	3	1	680	1	0	0	0	0	1	0	0	0	6901	1145	40	1	1819	1	GUCY1A3	4	156643251	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	1136470	156643251	34511025	14	41375											
HOMER1	9456	broad.mit.edu	37	5	78672018	78672018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	78672018	T	C	78672018	3	2	680	1	0	0	0	0	1	0	0	0	7285	1606	56	3	189	3	HOMER1	5	78672018	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10		78672018	102243242	15	41376											
HARS2	23438	broad.mit.edu	37	5	140073223	140073223	+	Silent	SNP	A	A	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	140073223	A	G	140073223	2	3	680	1	0	0	0	0	0	0	0	1	6967	40	2	3		3	HARS2	5	140073223	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10	61401205	140073223	40842037	16	41377											
PCDHGA2	56113	broad.mit.edu	37	5	140720439	140720439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	140720439	A	G	140720439	3	3	680	1	0	0	0	0	1	0	0	0	11561	275	10	3	1903	3	PCDHGA2	5	140720439	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	647216	140720439	40194821	17	41378											
UBLCP1	134510	bcgsc.ca	37	5	158696939	158696939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	158696939	A	G	158696939	3	3	680	1	0	0	0	0	1	0	0	0	16903	363	13	3	184	3	UBLCP1	5	158696939	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	17976500	158696939	22218321	18	41379											
HLA-DQB1	3119	mdanderson.org	37	6	32634331	32634331	+	Silent	SNP	G	G	C	rs1049058	byfrequency	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	32634331	G	C	32634331	2	2	680	1	0	0	0	0	0	0	0	1	7213	1277	45	4		4	HLA-DQB1	6	32634331	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10		32634331	138480736	19	41380			1	104		2	2	20	N	T_G	4.173479e-05
HLA-DQB1	3119	bcgsc.ca	37	6	32634350	32634350	+	Missense_Mutation	SNP	T	T	C	rs36222414		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	32634350	T	C	32634350	3	2	680	1	0	0	0	0	1	0	0	0	7213	1667	58	3	770	3	HLA-DQB1	6	32634350	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	19	32634350	138480717	20	41381			1	104		2	2	20	N	T_G	4.173479e-05
USP45	85015	ucsc.edu	37	6	99930673	99930673	+	Silent	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	99930673	T	C	99930673	2	2	680	1	0	0	0	0	0	0	0	1	17088	1606	56	3		3	USP45	6	99930673	Silent	SNP	T	TCGA-KL-8342-01A-11D-2310-10	67296323	99930673	71184394	21	41382											
AHI1	54806	broad.mit.edu	37	6	135787070	135787070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	135787070	T	C	135787070	3	2	680	1	0	0	0	0	1	0	0	0	413	1792	62	3	3108	3	AHI1	6	135787070	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	35856397	135787070	35327997	22	41383											
PARK2	5071	broad.mit.edu	37	6	162394348	162394348	+	Silent	SNP	C	C	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	162394348	C	A	162394348	2	1	680	1	0	0	0	0	0	0	0	1	11456	523	19	4		4	PARK2	6	162394348	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	26607278	162394348	8720719	23	41384											
PILRB	29990	broad.mit.edu;bcgsc.ca	37	7	99956366	99956366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	99956366	C	T	99956366	3	4	680	1	0	0	0	0	1	0	0	0	11933	478	17	2	124	2	PILRB	7	99956366	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		99956366	59182297	24	41385											
PRSS1	5644	mdanderson.org	37	7	142458409	142458409	+	Missense_Mutation	SNP	C	C	G	rs200665515		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	142458409	C	G	142458409	3	3	680	1	0	0	0	0	1	0	0	0	12624	797	28	4	50	4	PRSS1	7	142458409	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	42502043	142458409	16680254	25	41386	546	2									
PRSS1	5644	mdanderson.org	37	7	142458412	142458412	+	Missense_Mutation	SNP	C	C	T	rs202003805		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	142458412	C	T	142458412	3	4	680	1	0	0	0	0	1	0	0	0	12624	739	26	2	53	2	PRSS1	7	142458412	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	3	142458412	16680251	26	41387	546	2									
PPP2R2A	5520	broad.mit.edu	37	8	26196504	26196504	+	Splice_Site	SNP	G	G	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	26196504	G	T	26196504	5	4	680	1	0	0	0	0	0	0	1	0	12394	1275	44	4	232	4	PPP2R2A	8	26196504	Splice_Site	SNP	G	TCGA-KL-8342-01A-11D-2310-10		26196504	120167518	27	41388											
GDF6	392255	bcgsc.ca	37	8	97172838	97172838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	97172838	A	G	97172838	3	3	680	1	0	0	0	0	1	0	0	0	6324	333	12	3	1292	3	GDF6	8	97172838	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	70976334	97172838	49191184	28	41389											
FAM120A	23196	broad.mit.edu	37	9	96233575	96233576	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	96233576	-	A	96233575	7	5	680	1	0	1	1	0	0	0	0	0	5419	1161	41	0	633	0	FAM120A	9	96233575	Frame_Shift_Ins	INS	-	TCGA-KL-8342-01A-11D-2310-10		96233575	44979856	29	41390											
ZCCHC24	219654	ucsc.edu;bcgsc.ca	37	10	81205166	81205166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	81205166	C	T	81205166	3	4	680	1	0	0	0	0	1	0	0	0	17600	768	27	1	710	1	ZCCHC24	10	81205166	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		81205166	54329581	30	41391											
LDB3	11155	broad.mit.edu	37	10	88476140	88476140	+	Missense_Mutation	SNP	A	A	C	rs143163993	alternate_allele	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	88476140	A	C	88476140	3	2	680	1	0	0	0	0	1	0	0	0	8704	159	6	5	1658	5	LDB3	10	88476140	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	7270974	88476140	47058607	31	41392											
MUC6	4588	mdanderson.org	37	11	1016684	1016684	+	Silent	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	1016684	G	A	1016684	2	1	680	1	0	0	0	0	0	0	0	1	9987	1020	36	2		2	MUC6	11	1016684	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10		1016684	133989832	32	41393											
MUC5B	727897	mdanderson.org	37	11	1258240	1258241	+	Silent	DNP	CA	CA	TG	rs79773885		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	TG	1258241	CA	TG	1258240	2	4	680	1	0	0	0	0	0	0	0	1	9986	710	25	2		2	MUC5B	11	1258240	Silent	DNP	CA	TCGA-KL-8342-01A-11D-2310-10	241556	1258240	133748276	33	41394											
DPAGT1	1798	mdanderson.org	37	11	118967931	118967931	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	118967931	A	C	118967931	3	2	680	1	0	0	0	0	1	0	0	0	4712	217	8	5	152	5	DPAGT1	11	118967931	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	117709691	118967931	16038585	34	41395											
DIP2B	57609	broad.mit.edu	37	12	51072520	51072520	+	Silent	SNP	A	A	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	51072520	A	G	51072520	2	3	680	1	0	0	0	0	0	0	0	1	4530	69	3	3		3	DIP2B	12	51072520	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10		51072520	82779375	35	41396											
ERBB3	2065	hgsc.bcm.edu;mdanderson.org	37	12	56491706	56491706	+	Silent	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	56491706	G	A	56491706	2	1	680	1	0	0	0	0	0	0	0	1	5210	1306	46	2		2	ERBB3	12	56491706	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10	5419186	56491706	77360189	36	41397											
GNS	2799	broad.mit.edu	37	12	65115476	65115476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	65115476	G	A	65115476	3	1	680	1	0	0	0	0	1	0	0	0	6557	1232	43	2	352	2	GNS	12	65115476	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	8623770	65115476	68736419	37	41398											
PHLDA1	22822	hgsc.bcm.edu	37	12	76424940	76424940	+	Silent	SNP	C	C	T	rs80344196		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	76424940	C	T	76424940	2	4	680	1	0	0	0	0	0	0	0	1	11855	796	28	2		2	PHLDA1	12	76424940	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	11309464	76424940	57426955	38	41399											
NAA30	122830	broad.mit.edu	37	14	57863498	57863498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	57863498	C	T	57863498	3	4	680	1	0	0	0	0	1	0	0	0	10129	739	26	2	806	2	NAA30	14	57863498	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		57863498	49486042	39	41400											
TIMM9	26520	broad.mit.edu;mdanderson.org;bcgsc.ca	37	14	58878663	58878663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	58878663	T	C	58878663	3	2	680	1	0	0	0	0	1	0	0	0	15928	1406	49	3	280	3	TIMM9	14	58878663	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	1015165	58878663	48470877	40	41401											
FMN1	342184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	33359287	33359287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	33359287	C	T	33359287	3	4	680	1	0	0	0	0	1	0	0	0	5956	603	21	2	2859	2	FMN1	15	33359287	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		33359287	69172105	41	41402											
WDR72	256764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	53997272	53997272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	53997272	A	G	53997272	3	3	680	1	0	0	0	0	1	0	0	0	17334	217	8	3	2087	3	WDR72	15	53997272	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	20637985	53997272	48534120	42	41403											
VPS13C	54832	broad.mit.edu	37	15	62243167	62243167	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	-	62243167	G	-	62243167	7	5	680	1	0	1	0	1	0	0	0	0	17203	1000	35	0	6960	0	VPS13C	15	62243167	Frame_Shift_Del	DEL	G	TCGA-KL-8342-01A-11D-2310-10	8245895	62243167	40288225	43	41404											
C15orf39	56905	broad.mit.edu	37	15	75503149	75503149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	75503149	G	A	75503149	3	1	680	1	0	0	0	0	1	0	0	0	1795	1291	45	2	2842	2	C15orf39	15	75503149	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	13259982	75503149	27028243	44	41405											
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058942	79058944	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	-	79058944	GCA	-	79058942	7	5	680	1	0	1	0	1	0	0	0	0	271	1087	38	0	1773	0	ADAMTS7	15	79058942	In_Frame_Del	DEL	GCA	TCGA-KL-8342-01A-11D-2310-10	3555793	79058942	23472450	45	41406											
ADAMTS17	170691	broad.mit.edu;mdanderson.org;bcgsc.ca	37	15	100672306	100672306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	100672306	C	T	100672306	3	4	680	1	0	0	0	0	1	0	0	0	262	855	30	2	1704	2	ADAMTS17	15	100672306	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	21613364	100672306	1859086	46	41407											
TSC2	7249	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	2129290	2129290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	2129290	G	A	2129290	3	1	680	1	0	0	0	0	1	0	0	0	16618	1059	37	1	3251	1	TSC2	16	2129290	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10		2129290	88225463	47	41408											
CPPED1	55313	mdanderson.org	37	16	12875238	12875238	+	Silent	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	12875238	G	A	12875238	2	1	680	1	0	0	0	0	0	0	0	1	3824	1190	42	2		2	CPPED1	16	12875238	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10	10745948	12875238	77479515	48	41409											
ERCC4	2072	broad.mit.edu	37	16	14041897	14041897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	14041897	A	T	14041897	3	4	680	1	0	0	0	0	1	0	0	0	5217	304	11	5	2486	5	ERCC4	16	14041897	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	1166659	14041897	76312856	49	41410											
ERN2	10595	broad.mit.edu	37	16	23716452	23716452	+	Silent	SNP	C	C	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	23716452	C	T	23716452	2	4	680	1	0	0	0	0	0	0	0	1	5240	523	19	1		1	ERN2	16	23716452	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	9674555	23716452	66638301	50	41411											
SLC9A5	6553	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	67293560	67293560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	67293560	C	A	67293560	3	1	680	1	0	0	0	0	1	0	0	0	14730	680	24	4	1753	4	SLC9A5	16	67293560	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	43577108	67293560	23061193	51	41412											
HYDIN	54768	mdanderson.org	37	16	71163579	71163579	+	Silent	SNP	C	C	T	rs929311	bycluster;byfrequency;by2hit2allele	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	71163579	C	T	71163579	2	4	680	1	0	0	0	0	0	0	0	1	7474	796	28	2		2	HYDIN	16	71163579	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	3870019	71163579	19191174	52	41413											
SOCS7	30837	ucsc.edu	37	17	36552111	36552111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	36552111	T	C	36552111	3	2	680	1	0	0	0	0	1	0	0	0	14932	1551	54	3	1670	3	SOCS7	17	36552111	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10		36552111	44643099	53	41414											
KRT17	3872	mdanderson.org	37	17	39775939	39775939	+	Silent	SNP	C	C	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	39775939	C	T	39775939	2	4	680	1	0	0	0	0	0	0	0	1	8461	666	23	1		1	KRT17	17	39775939	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	3223828	39775939	41419271	54	41415											
BECN1	8678	broad.mit.edu	37	17	40970314	40970314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	40970314	T	C	40970314	3	2	680	1	0	0	0	0	1	0	0	0	1396	1609	56	3	768	3	BECN1	17	40970314	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	1194375	40970314	40224896	55	41416											
PLEKHM1	9842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	43531447	43531447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	43531447	C	G	43531447	3	3	680	1	0	0	0	0	1	0	0	0	12087	826	29	4	1423	4	PLEKHM1	17	43531447	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	2561133	43531447	37663763	56	41417											
MADCAM1	8174	mdanderson.org	37	19	501786	501786	+	Missense_Mutation	SNP	C	C	A	rs77264553	byfrequency	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	501786	C	A	501786	3	1	680	1	0	0	0	0	1	0	0	0	9158	652	23	4	799	4	MADCAM1	19	501786	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		501786	58627197	57	41418											
COL5A3	50509	broad.mit.edu	37	19	10091506	10091506	+	Silent	SNP	A	A	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	10091506	A	C	10091506	2	2	680	1	0	0	0	0	0	0	0	1	3700	146	6	5		5	COL5A3	19	10091506	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10	9589720	10091506	49037477	58	41419											
LRFN3	79414	broad.mit.edu	37	19	36430411	36430412	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	36430412	-	C	36430411	7	5	680	1	0	1	1	0	0	0	0	0	8946	1673	58	0	86	0	LRFN3	19	36430411	Frame_Shift_Ins	INS	-	TCGA-KL-8342-01A-11D-2310-10	26338905	36430411	22698572	59	41420											
FCGBP	8857	mdanderson.org	37	19	40376900	40376900	+	Missense_Mutation	SNP	G	G	T	rs2542321	bycluster;byfrequency	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	40376900	G	T	40376900	3	4	680	1	0	0	0	0	1	0	0	0	5785	1087	38	4	4747	4	FCGBP	19	40376900	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	3946489	40376900	18752083	60	41421											
DMWD	1762	broad.mit.edu	37	19	46289153	46289154	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	46289154	-	G	46289153	7	5	680	1	0	1	1	0	0	0	0	0	4595	652	23	0	435	0	DMWD	19	46289153	Frame_Shift_Ins	INS	-	TCGA-KL-8342-01A-11D-2310-10	5912253	46289153	12839830	61	41422											
ATP5E	514	broad.mit.edu	37	20	57605434	57605434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	57605434	T	C	57605434	3	2	680	1	0	0	0	0	1	0	0	0	1151	1609	56	3	76	3	ATP5E	20	57605434	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10		57605434	5420086	62	41423											
TMPRSS15	5651	broad.mit.edu	37	21	19751610	19751610	+	Silent	SNP	C	C	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	19751610	C	T	19751610	2	4	680	1	0	0	0	0	0	0	0	1	16258	581	21	2		2	TMPRSS15	21	19751610	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10		19751610	28378285	63	41424											
CECR2	27443	broad.mit.edu	37	22	18029228	18029228	+	Silent	SNP	T	T	C	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	C	18029228	T	C	18029228	2	2	680	1	0	0	0	0	0	0	0	1	3208	1596	56	3		3	CECR2	22	18029228	Silent	SNP	T	TCGA-KL-8342-01A-11D-2310-10		18029228	33275338	64	41425											
ARFGAP3	26286	ucsc.edu;mdanderson.org;bcgsc.ca	37	22	43231465	43231465	+	Missense_Mutation	SNP	T	T	A	rs142981529	byfrequency;alternate_allele	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	43231465	T	A	43231465	3	1	680	1	0	0	0	0	1	0	0	0	851	1493	52	5	1306	5	ARFGAP3	22	43231465	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	25202237	43231465	8073101	65	41426											
MAGEB6	158809	bcgsc.ca	37	X	26212262	26212262	+	Missense_Mutation	SNP	C	C	T	rs4272533		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	26212262	C	T	26212262	3	4	680	1	0	0	0	0	1	0	0	0	9186	739	26	2	301	2	MAGEB6	23	26212262	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		26212262	129058298	66	41427											
BCOR	54880	broad.mit.edu	37	X	39913558	39913558	+	Silent	SNP	A	A	G	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	G	39913558	A	G	39913558	2	3	680	1	0	0	0	0	0	0	0	1	1386	214	8	3		3	BCOR	23	39913558	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10	13701296	39913558	115357002	67	41428											
AIFM1	9131	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	129281737	129281737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	A	129281737	G	A	129281737	3	1	680	1	0	0	0	0	1	0	0	0	426	1000	35	2	1441	2	AIFM1	23	129281737	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	89368179	129281737	25988823	68	41429											
MAMLD1	10046	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	149638778	149638778	+	Silent	SNP	A	A	T	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0	T	149638778	A	T	149638778	2	4	680	1	0	0	0	0	0	0	0	1	9215	175	7	5		5	MAMLD1	23	149638778	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10	20357041	149638778	5631782	69	41430											
RBMXL1	494115	mdanderson.org	37	1	89448940	89448940	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	89448940	A	G	89448940	2	3	681	1	0	0	0	0	0	0	0	1	13166	224	8	3		3	RBMXL1	1	89448940	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10		89448940	159801681	1	41431											
CELSR2	1952	mdanderson.org	37	1	109801121	109801121	+	Silent	SNP	C	C	T	rs684138	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	109801121	C	T	109801121	2	4	681	1	0	0	0	0	0	0	0	1	3224	610	22	2		2	CELSR2	1	109801121	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	20352181	109801121	139449500	2	41432											
AMPD2	271	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	110168780	110168780	+	Splice_Site	SNP	A	A	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	110168780	A	T	110168780	5	4	681	1	0	0	0	0	0	0	1	0	586	434	15	5	569	5	AMPD2	1	110168780	Splice_Site	SNP	A	TCGA-KL-8343-01A-11D-2310-10	367659	110168780	139081841	3	41433											
CHIA	27159	mdanderson.org;bcgsc.ca	37	1	111863044	111863044	+	Missense_Mutation	SNP	G	G	A	rs142653250	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	111863044	G	A	111863044	3	1	681	1	0	0	0	0	1	0	0	0	3344	1116	39	1	1429	1	CHIA	1	111863044	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	1694264	111863044	137387577	4	41434											
NBPF10	100132406	mdanderson.org	37	1	145299805	145299805	+	Missense_Mutation	SNP	A	A	C	rs61814629		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	145299805	A	C	145299805	3	2	681	1	0	0	0	0	1	0	0	0	10200	304	11	5	876	5	NBPF10	1	145299805	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	33436761	145299805	103950816	5	41435											
PRG4	10216	broad.mit.edu	37	1	186276256	186276257	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	CCA	186276257	-	CCA	186276256	7	5	681	1	0	1	1	0	0	0	0	0	12491	507	18	0	1427	0	PRG4	1	186276256	In_Frame_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	40976451	186276256	62974365	6	41436											
TPR	7175	bcgsc.ca	37	1	186283126	186283126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	186283126	T	C	186283126	3	2	681	1	0	0	0	0	1	0	0	0	16428	1493	52	3	26	3	TPR	1	186283126	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	6870	186283126	62967495	7	41437											
CHIT1	1118	hgsc.bcm.edu;ucsc.edu	37	1	203188924	203188924	+	Silent	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	203188924	G	T	203188924	2	4	681	1	0	0	0	0	0	0	0	1	3348	1164	41	4		4	CHIT1	1	203188924	Silent	SNP	G	TCGA-KL-8343-01A-11D-2310-10	16905798	203188924	46061697	8	41438											
RD3	343035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	211654675	211654675	+	Missense_Mutation	SNP	G	G	A	rs61740157	bycluster;byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	211654675	G	A	211654675	3	1	681	1	0	0	0	0	1	0	0	0	13200	1145	40	1	512	1	RD3	1	211654675	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	8465751	211654675	37595946	9	41439											
LYST	1130	ucsc.edu	37	1	235964396	235964396	+	Silent	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	235964396	C	T	235964396	2	4	681	1	0	0	0	0	0	0	0	1	9135	637	22	2		2	LYST	1	235964396	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	24309721	235964396	13286225	10	41440											
SDC1	6382	broad.mit.edu	37	2	20402642	20402642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	20402642	A	G	20402642	3	3	681	1	0	0	0	0	1	0	0	0	13964	246	9	3	118	3	SDC1	2	20402642	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		20402642	222796731	11	41441											
TRIM54	57159	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	27527838	27527838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	27527838	C	A	27527838	3	1	681	1	0	0	0	0	1	0	0	0	16540	767	27	4	669	4	TRIM54	2	27527838	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	7125196	27527838	215671535	12	41442											
EIF2B4	8890	mdanderson.org	37	2	27592316	27592316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	27592316	T	C	27592316	3	2	681	1	0	0	0	0	1	0	0	0	5005	1551	54	3	1439	3	EIF2B4	2	27592316	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	64478	27592316	215607057	13	41443											
IMMT	10989	bcgsc.ca	37	2	86408441	86408441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	86408441	A	G	86408441	3	3	681	1	0	0	0	0	1	0	0	0	7725	304	11	3	2232	3	IMMT	2	86408441	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	58816125	86408441	156790932	14	41444											
IL18RAP	8807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	103068475	103068475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	103068475	T	A	103068475	3	1	681	1	0	0	0	0	1	0	0	0	7655	1725	60	5	1672	5	IL18RAP	2	103068475	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	16660034	103068475	140130898	15	41445											
SAP130	79595	broad.mit.edu;bcgsc.ca	37	2	128747329	128747329	+	Missense_Mutation	SNP	C	C	A	rs199755359	alternate_allele	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	128747329	C	A	128747329	3	1	681	1	0	0	0	0	1	0	0	0	13844	884	31	4	1620	4	SAP130	2	128747329	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	25678854	128747329	114452044	16	41446											
HSPD1	3329	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	198358117	198358117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	198358117	T	A	198358117	3	1	681	1	0	0	0	0	1	0	0	0	7435	1696	59	5	945	5	HSPD1	2	198358117	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	69610788	198358117	44841256	17	41447											
ROBO2	6092	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	77645803	77645803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	77645803	C	T	77645803	3	4	681	1	0	0	0	0	1	0	0	0	13527	623	22	2	2832	2	ROBO2	3	77645803	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		77645803	120376627	18	41448											
POU1F1	5449	bcgsc.ca	37	3	87311219	87311219	+	Splice_Site	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	87311219	A	G	87311219	5	3	681	1	0	0	0	0	0	0	1	0	12276	405	14	3	281	3	POU1F1	3	87311219	Splice_Site	SNP	A	TCGA-KL-8343-01A-11D-2310-10	9665416	87311219	110711211	19	41449											
ZBTB11	27107	broad.mit.edu	37	3	101395694	101395694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	101395694	G	A	101395694	3	1	681	1	0	0	0	0	1	0	0	0	17536	1087	38	1	3140	1	ZBTB11	3	101395694	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	14084475	101395694	96626736	20	41450											
COL6A5	256076	broad.mit.edu	37	3	130114173	130114173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	130114173	G	T	130114173	3	4	681	1	0	0	0	0	1	0	0	0	3704	1377	48	4	3459	4	COL6A5	3	130114173	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	28718479	130114173	67908257	21	41451											
TOPBP1	11073	broad.mit.edu	37	3	133368474	133368474	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	133368474	A	G	133368474	2	3	681	1	0	0	0	0	0	0	0	1	16381	291	11	3		3	TOPBP1	3	133368474	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10	3254301	133368474	64653956	22	41452											
MUC4	4585	broad.mit.edu	37	3	195512280	195512281	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	195512281	-	G	195512280	7	5	681	1	0	1	1	0	0	0	0	0	9985	1393	49	0		0	MUC4	3	195512280	Frame_Shift_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	62143806	195512280	2510150	23	41453											
CRIPAK	285464	bcgsc.ca	37	4	1388697	1388697	+	Missense_Mutation	SNP	C	C	T	rs113316888	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	1388697	C	T	1388697	3	4	681	1	0	0	0	0	1	0	0	0	3879	768	27	1	400	1	CRIPAK	4	1388697	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		1388697	189765579	24	41454											
UGT8	7368	hgsc.bcm.edu;ucsc.edu	37	4	115544546	115544546	+	Silent	SNP	T	T	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	115544546	T	G	115544546	2	3	681	1	0	0	0	0	0	0	0	1	16977	1538	54	5		5	UGT8	4	115544546	Silent	SNP	T	TCGA-KL-8343-01A-11D-2310-10	114155849	115544546	75609730	25	41455											
TKTL2	84076	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	164394497	164394497	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	164394497	T	A	164394497	3	1	681	1	0	0	0	0	1	0	0	0	15948	1519	53	5	1494	5	TKTL2	4	164394497	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	48849951	164394497	26759779	26	41456											
NIPBL	25836	broad.mit.edu	37	5	36985238	36985238	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	36985238	A	G	36985238	2	3	681	1	0	0	0	0	0	0	0	1	10435	40	2	3		3	NIPBL	5	36985238	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10		36985238	143930022	27	41457											
DAB2	1601	broad.mit.edu	37	5	39376947	39376947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	39376947	T	C	39376947	3	2	681	1	0	0	0	0	1	0	0	0	4220	1435	50	3	382	3	DAB2	5	39376947	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	2391709	39376947	141538313	28	41458											
MSH3	4437	broad.mit.edu;mdanderson.org	37	5	79968625	79968625	+	Silent	SNP	C	C	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	79968625	C	G	79968625	2	3	681	1	0	0	0	0	0	0	0	1	9878	900	32	4		4	MSH3	5	79968625	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	40591678	79968625	100946635	29	41459											
FLT4	2324	broad.mit.edu	37	5	180048849	180048850	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	GC	180048850	-	GC	180048849	7	5	681	1	0	1	1	0	0	0	0	0	5951	1190	42	0	2458	0	FLT4	5	180048849	Frame_Shift_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	100080224	180048849	866411	30	41460											
RING1	6015	ucsc.edu	37	6	33179664	33179664	+	Missense_Mutation	SNP	A	A	G	rs73741545		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	33179664	A	G	33179664	3	3	681	1	0	0	0	0	1	0	0	0	13387	304	11	3	1022	3	RING1	6	33179664	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		33179664	137935403	31	41461											
CUL7	9820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	43020113	43020113	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	43020113	A	G	43020113	2	3	681	1	0	0	0	0	0	0	0	1	4062	233	9	3		3	CUL7	6	43020113	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10	9840449	43020113	128094954	32	41462											
HSP90AB1	3326	mdanderson.org	37	6	44221265	44221265	+	Missense_Mutation	SNP	C	C	A	rs200104342	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	44221265	C	A	44221265	3	1	681	1	0	0	0	0	1	0	0	0	7409	797	28	4	2147	4	HSP90AB1	6	44221265	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	1201152	44221265	126893802	33	41463											
CD109	135228	bcgsc.ca	37	6	74468723	74468723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	74468723	A	G	74468723	3	3	681	1	0	0	0	0	1	0	0	0	2965	363	13	3	756	3	CD109	6	74468723	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	30247458	74468723	96646344	34	41464											
AEBP1	165	mdanderson.org	37	7	44147485	44147485	+	Missense_Mutation	SNP	C	C	A	rs2537188	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	44147485	C	A	44147485	3	1	681	1	0	0	0	0	1	0	0	0	349	739	26	4	835	4	AEBP1	7	44147485	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		44147485	114991178	35	41465											
NAMPT	10135	mdanderson.org	37	7	105903965	105903965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	105903965	T	C	105903965	3	2	681	1	0	0	0	0	1	0	0	0	10156	1406	49	3	653	3	NAMPT	7	105903965	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	61756480	105903965	53234698	36	41466											
BCAP29	55973	mdanderson.org	37	7	107253813	107253813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	107253813	A	G	107253813	3	3	681	1	0	0	0	0	1	0	0	0	1346	72	3	3	648	3	BCAP29	7	107253813	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	1349848	107253813	51884850	37	41467											
PAX4	5078	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	127255519	127255519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	127255519	C	T	127255519	3	4	681	1	0	0	0	0	1	0	0	0	11488	652	23	1	1011	1	PAX4	7	127255519	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	20001706	127255519	31883144	38	41468											
SSPO	23145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	149486388	149486388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	149486388	G	T	149486388	3	4	681	1	0	0	0	0	1	0	0	0	15201	1203	42	4	4478	4	SSPO	7	149486388	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	22230869	149486388	9652275	39	41469											
ZFHX4	79776	broad.mit.edu;mdanderson.org	37	8	77763344	77763344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	77763344	A	G	77763344	3	3	681	1	0	0	0	0	1	0	0	0	17647	72	3	3	4221	3	ZFHX4	8	77763344	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		77763344	68600678	40	41470	547	2									
ZFHX4	79776	mdanderson.org;bcgsc.ca	37	8	77763346	77763346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	77763346	T	C	77763346	3	2	681	1	0	0	0	0	1	0	0	0	17647	1638	57	3	4223	3	ZFHX4	8	77763346	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	2	77763346	68600676	41	41471	547	2									
PABPC1	26986	mdanderson.org	37	8	101730065	101730065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	101730065	T	C	101730065	3	2	681	1	0	0	0	0	1	0	0	0	11370	1667	58	3	1519	3	PABPC1	8	101730065	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	23966719	101730065	44633957	42	41472											
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Frame_Shift_Del	DEL	G	G	-	rs142782873	by1000genomes	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	120220776	G	-	120220776	7	5	681	1	0	1	0	1	0	0	0	0	9207	1116	39	0	67	0	MAL2	8	120220776	Frame_Shift_Del	DEL	G	TCGA-KL-8343-01A-11D-2310-10	18490711	120220776	26143246	43	41473											
TIGD5	84948	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	144680424	144680424	+	Silent	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	144680424	G	T	144680424	2	4	681	1	0	0	0	0	0	0	0	1	15911	1190	42	4		4	TIGD5	8	144680424	Silent	SNP	G	TCGA-KL-8343-01A-11D-2310-10	24459648	144680424	1683598	44	41474											
FGD3	89846	ucsc.edu	37	9	95792199	95792199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	95792199	A	G	95792199	3	3	681	1	0	0	0	0	1	0	0	0	5841	304	11	3	1651	3	FGD3	9	95792199	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		95792199	45421232	45	41475											
PFKFB3	5209	ucsc.edu	37	10	6261653	6261653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	6261653	A	G	6261653	3	3	681	1	0	0	0	0	1	0	0	0	11769	275	10	3	666	3	PFKFB3	10	6261653	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		6261653	129273094	46	41476											
CHST3	9469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	73767938	73767938	+	Silent	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	73767938	C	T	73767938	2	4	681	1	0	0	0	0	0	0	0	1	3407	755	27	1		1	CHST3	10	73767938	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	67506285	73767938	61766809	47	41477											
KIF11	3832	ucsc.edu	37	10	94399586	94399586	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	94399586	A	G	94399586	2	3	681	1	0	0	0	0	0	0	0	1	8279	330	12	3		3	KIF11	10	94399586	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10	20631648	94399586	41135161	48	41478											
NLRP6	171389	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	281811	281811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	281811	C	T	281811	3	4	681	1	0	0	0	0	1	0	0	0	10488	759	27	1	2091	1	NLRP6	11	281811	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		281811	134724705	49	41479											
DEAF1	10522	broad.mit.edu	37	11	694933	694934	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	AG	694934	-	AG	694933	7	5	681	1	0	1	1	0	0	0	0	0	4382	864	30	0	1630	0	DEAF1	11	694933	Frame_Shift_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	413122	694933	134311583	50	41480											
CTSD	1509	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	1774767	1774767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	1774767	T	C	1774767	3	2	681	1	0	0	0	0	1	0	0	0	4034	1725	60	3	37	3	CTSD	11	1774767	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	1079834	1774767	133231749	51	41481											
MICALCL	84953	broad.mit.edu	37	11	12315174	12315175	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	12315175	-	G	12315174	7	5	681	1	0	1	1	0	0	0	0	0	9579	875	31	0	202	0	MICALCL	11	12315174	Frame_Shift_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	10540407	12315174	122691342	52	41482											
RCN1	5954	broad.mit.edu;hgsc.bcm.edu	37	11	32118784	32118784	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	32118784	T	-	32118784	7	5	681	1	0	1	0	1	0	0	0	0	13192	1609	56	0	355	0	RCN1	11	32118784	Frame_Shift_Del	DEL	T	TCGA-KL-8343-01A-11D-2310-10	19803610	32118784	102887732	53	41483	548	2									
RCN1	5954	bcgsc.ca	37	11	32118785	32118785	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	32118785	T	-	32118785	7	5	681	1	0	1	0	1	0	0	0	0	13192	1841	64	0	356	0	RCN1	11	32118785	Frame_Shift_Del	DEL	T	TCGA-KL-8343-01A-11D-2310-10	1	32118785	102887731	54	41484	548	2									
SLC25A45	283130	mdanderson.org;bcgsc.ca	37	11	65144406	65144406	+	Missense_Mutation	SNP	G	G	A	rs34377244		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	65144406	G	A	65144406	3	1	681	1	0	0	0	0	1	0	0	0	14523	1115	39	1	393	1	SLC25A45	11	65144406	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	33025621	65144406	69862110	55	41485											
CHRDL2	25884	broad.mit.edu;hgsc.bcm.edu	37	11	74408313	74408316	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	CTTT	CTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	74408316	CTTT	-	74408313	7	5	681	1	0	1	0	1	0	0	0	0	3376	565	20	0	158	0	CHRDL2	11	74408313	Frame_Shift_Del	DEL	CTTT	TCGA-KL-8343-01A-11D-2310-10	9263907	74408313	60598203	56	41486	549	2									
CHRDL2	25884	bcgsc.ca	37	11	74408314	74408317	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	CTTT	CTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	74408317	CTTT	-	74408314	7	5	681	1	0	1	0	1	0	0	0	0	3376	1609	56	0	159	0	CHRDL2	11	74408314	Frame_Shift_Del	DEL	CTTT	TCGA-KL-8343-01A-11D-2310-10	1	74408314	60598202	57	41487	549	2									
FOLH1B	219595	broad.mit.edu	37	11	89420569	89420569	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	89420569	A	-	89420569	7	5	681	1	0	1	0	1	0	0	0	0	5987	363	13	0	597	0	FOLH1B	11	89420569	Frame_Shift_Del	DEL	A	TCGA-KL-8343-01A-11D-2310-10	15012255	89420569	45585947	58	41488											
TRIM49	57093	mdanderson.org	37	11	89537461	89537461	+	Silent	SNP	G	G	T	rs585471	bycluster;byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	89537461	G	T	89537461	2	4	681	1	0	0	0	0	0	0	0	1	16536	1103	39	4		4	TRIM49	11	89537461	Silent	SNP	G	TCGA-KL-8343-01A-11D-2310-10	116892	89537461	45469055	59	41489											
ETNK1	55500	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	22824236	22824236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	22824236	C	T	22824236	3	4	681	1	0	0	0	0	1	0	0	0	5275	913	32	2	1114	2	ETNK1	12	22824236	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		22824236	111027659	60	41490											
KRT77	374454	broad.mit.edu;bcgsc.ca	37	12	53084953	53084953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	53084953	T	C	53084953	3	2	681	1	0	0	0	0	1	0	0	0	8497	1551	54	3	7	3	KRT77	12	53084953	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	30260717	53084953	80766942	61	41491											
LRRC43	254050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	122672370	122672370	+	Silent	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	122672370	C	T	122672370	2	4	681	1	0	0	0	0	0	0	0	1	9008	547	19	1		1	LRRC43	12	122672370	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	69587417	122672370	11179525	62	41492											
MYCBP2	23077	ucsc.edu;mdanderson.org	37	13	77799637	77799637	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	77799637	A	G	77799637	2	3	681	1	0	0	0	0	0	0	0	1	10025	291	11	3		3	MYCBP2	13	77799637	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10		77799637	37370241	63	41493											
ADCY4	196883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	24793320	24793320	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	24793320	G	C	24793320	3	2	681	1	0	0	0	0	1	0	0	0	296	1203	42	4	1279	4	ADCY4	14	24793320	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10		24793320	82556220	64	41494											
BAG5	9529	broad.mit.edu	37	14	104026528	104026528	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	104026528	T	-	104026528	7	5	681	1	0	1	0	1	0	0	0	0	1290	1725	60	0	373	0	BAG5	14	104026528	Frame_Shift_Del	DEL	T	TCGA-KL-8343-01A-11D-2310-10	79233208	104026528	3323012	65	41495											
INO80	54617	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41313154	41313154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	41313154	G	C	41313154	3	2	681	1	0	0	0	0	1	0	0	0	7753	971	34	4	1496	4	INO80	15	41313154	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10		41313154	61218238	66	41496											
RNF111	54778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	59368246	59368246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	59368246	G	T	59368246	3	4	681	1	0	0	0	0	1	0	0	0	13438	1377	48	4	1802	4	RNF111	15	59368246	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	18055092	59368246	43163146	67	41497											
TMC5	79838	bcgsc.ca	37	16	19509242	19509242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	19509242	A	G	19509242	3	3	681	1	0	0	0	0	1	0	0	0	16000	289	10	3	3367	3	TMC5	16	19509242	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		19509242	70845511	68	41498											
RLTPR	146206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67679167	67679167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	67679167	C	G	67679167	3	3	681	1	0	0	0	0	1	0	0	0	13407	535	19	4	20	4	RLTPR	16	67679167	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	48169925	67679167	22675586	69	41499											
ALOX12B	242	broad.mit.edu	37	17	7980375	7980375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	7980375	T	C	7980375	3	2	681	1	0	0	0	0	1	0	0	0	537	1696	59	3	925	3	ALOX12B	17	7980375	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10		7980375	73214835	70	41500											
SPDYE4	388333	ucsc.edu	37	17	8661681	8661681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	8661681	C	T	8661681	3	4	681	1	0	0	0	0	1	0	0	0	15043	768	27	1	717	1	SPDYE4	17	8661681	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	681306	8661681	72533529	71	41501											
C17orf53	78995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	42225428	42225428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	42225428	C	A	42225428	3	1	681	1	0	0	0	0	1	0	0	0	1864	536	19	4	267	4	C17orf53	17	42225428	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	33563747	42225428	38969782	72	41502											
PLEKHM1	9842	mdanderson.org	37	17	43531297	43531297	+	Missense_Mutation	SNP	G	G	A	rs2684501		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	43531297	G	A	43531297	3	1	681	1	0	0	0	0	1	0	0	0	12087	1232	43	2	1273	2	PLEKHM1	17	43531297	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	1305869	43531297	37663913	73	41503											
FOXJ1	2302	mdanderson.org	37	17	74133974	74133974	+	Silent	SNP	C	C	T	rs894542	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	T	74133974	C	T	74133974	2	4	681	1	0	0	0	0	0	0	0	1	6018	639	23	1		1	FOXJ1	17	74133974	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	30602677	74133974	7061236	74	41504											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	6978199	6978199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	6978199	C	A	6978199	3	1	681	1	0	0	0	0	1	0	0	0	8612	594	21	4	3125	4	LAMA1	18	6978199	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		6978199	71099049	75	41505											
SBNO2	22904	ucsc.edu	37	19	1132115	1132115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	1132115	A	G	1132115	3	3	681	1	0	0	0	0	1	0	0	0	13876	159	6	3	3963	3	SBNO2	19	1132115	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		1132115	57996868	76	41506											
SHD	56961	broad.mit.edu	37	19	4280193	4280193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	4280193	C	A	4280193	3	1	681	1	0	0	0	0	1	0	0	0	14288	623	22	4	135	4	SHD	19	4280193	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	3148078	4280193	54848790	77	41507											
ANKLE1	126549	mdanderson.org	37	19	17393530	17393530	+	Missense_Mutation	SNP	T	T	A	rs8108174	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	17393530	T	A	17393530	3	1	681	1	0	0	0	0	1	0	0	0	632	1580	55	5	291	5	ANKLE1	19	17393530	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	13113337	17393530	41735453	78	41508											
CAPN12	147968	broad.mit.edu	37	19	39226063	39226063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	G	39226063	A	G	39226063	3	3	681	1	0	0	0	0	1	0	0	0	2627	420	15	3	558	3	CAPN12	19	39226063	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	21832533	39226063	19902920	79	41509											
ZNF133	7692	bcgsc.ca	37	20	18295937	18295951	+	In_Frame_Del	DEL	GGGAGAAGGTGCCAT	GGGAGAAGGTGCCAT	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	GGGAGAAGGTGCCAT	GGGAGAAGGTGCCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	18295951	GGGAGAAGGTGCCAT	-	18295937	7	5	681	1	0	1	0	1	0	0	0	0	17735	1233	43	0	449	0	ZNF133	20	18295937	In_Frame_Del	DEL	GGGAGAAGGTGCCAT	TCGA-KL-8343-01A-11D-2310-10		18295937	44729583	80	41510											
SEZ6L	23544	broad.mit.edu;mdanderson.org	37	22	26736527	26736527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	26736527	C	A	26736527	3	1	681	1	0	0	0	0	1	0	0	0	14156	507	18	4	2179	4	SEZ6L	22	26736527	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		26736527	24568039	81	41511											
MAGEB2	4113	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	30237265	30237265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	A	30237265	G	A	30237265	3	1	681	1	0	0	0	0	1	0	0	0	9183	1175	41	2	570	2	MAGEB2	23	30237265	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10		30237265	125033295	82	41512											
DMD	1756	broad.mit.edu;hgsc.bcm.edu	37	X	31198540	31198550	+	Frame_Shift_Del	DEL	GACCAGAAAAA	GACCAGAAAAA	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	GACCAGAAAAA	GACCAGAAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	31198550	GACCAGAAAAA	-	31198540	7	5	681	1	0	1	0	1	0	0	0	0	4582	1066	37	0	1158	0	DMD	23	31198540	Frame_Shift_Del	DEL	GACCAGAAAAA	TCGA-KL-8343-01A-11D-2310-10	961275	31198540	124072020	83	41513	550	2									
DMD	1756	bcgsc.ca	37	X	31198541	31198551	+	Frame_Shift_Del	DEL	GACCAGAAAAA	GACCAGAAAAA	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	GACCAGAAAAA	GACCAGAAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	-	31198551	GACCAGAAAAA	-	31198541	7	5	681	1	0	1	0	1	0	0	0	0	4582	262	10	0	1159	0	DMD	23	31198541	Frame_Shift_Del	DEL	GACCAGAAAAA	TCGA-KL-8343-01A-11D-2310-10	1	31198541	124072019	84	41514	550	2									
DMD	1756	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	32382805	32382805	+	Missense_Mutation	SNP	G	G	C	rs146420425		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	C	32382805	G	C	32382805	3	2	681	1	0	0	0	0	1	0	0	0	4582	1029	36	4	6333	4	DMD	23	32382805	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	1184264	32382805	122887755	85	41515											
PRAMEF4	400735	ucsc.edu;mdanderson.org	37	1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	rs77146569	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	12939904	A	C	12939904	3	2	682	1	0	0	0	0	1	0	0	0	12447	43	2	5	542	5	PRAMEF4	1	12939904	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10		12939904	236310717	1	41516											
OPRD1	4985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	29189494	29189494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	29189494	G	A	29189494	3	1	682	1	0	0	0	0	1	0	0	0	10891	1377	48	2	828	2	OPRD1	1	29189494	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10	16249590	29189494	220061127	2	41517											
DMAP1	55929	hgsc.bcm.edu	37	1	44684410	44684410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	44684410	A	G	44684410	3	3	682	1	0	0	0	0	1	0	0	0	4578	130	5	3	721	3	DMAP1	1	44684410	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	15494916	44684410	204566211	3	41518											
TTC22	55001	bcgsc.ca	37	1	55266518	55266518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	55266518	C	T	55266518	3	4	682	1	0	0	0	0	1	0	0	0	16701	739	26	2	1521	2	TTC22	1	55266518	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	10582108	55266518	193984103	4	41519											
GBP2	2634	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	89585913	89585913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	89585913	A	C	89585913	3	2	682	1	0	0	0	0	1	0	0	0	6281	246	9	5	1430	5	GBP2	1	89585913	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	34319395	89585913	159664708	5	41520											
CHD1L	9557	hgsc.bcm.edu	37	1	146767123	146767123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	146767123	C	T	146767123	3	4	682	1	0	0	0	0	1	0	0	0	3326	681	24	2	2717	2	CHD1L	1	146767123	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	57181210	146767123	102483498	6	41521											
HRNR	388697	broad.mit.edu	37	1	152191466	152191466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	152191466	C	T	152191466	3	4	682	1	0	0	0	0	1	0	0	0	7366	768	27	1	5917	1	HRNR	1	152191466	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	5424343	152191466	97059155	7	41522											
PPP1R12B	4660	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	202391786	202391786	+	Missense_Mutation	SNP	A	A	G	rs141572166		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	202391786	A	G	202391786	3	3	682	1	0	0	0	0	1	0	0	0	12365	101	4	3	471	3	PPP1R12B	1	202391786	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	50200320	202391786	46858835	8	41523											
OBSCN	84033	mdanderson.org	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	228504669	G	A	228504669	2	1	682	1	0	0	0	0	0	0	0	1	10819	1074	38	1		1	OBSCN	1	228504669	Silent	SNP	G	TCGA-KL-8344-01A-11D-2310-10	26112883	228504669	20745952	9	41524											
NCKAP1	10787	broad.mit.edu	37	2	183791547	183791547	+	Silent	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	183791547	A	G	183791547	2	3	682	1	0	0	0	0	0	0	0	1	10228	446	16	3		3	NCKAP1	2	183791547	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10		183791547	59407826	10	41525											
RAPH1	65059	mdanderson.org	37	2	204305990	204305990	+	Silent	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	204305990	A	G	204305990	2	3	682	1	0	0	0	0	0	0	0	1	13063	291	11	3		3	RAPH1	2	204305990	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10	20514443	204305990	38893383	11	41526											
PAX3	5077	broad.mit.edu	37	2	223066834	223066834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	223066834	C	T	223066834	3	4	682	1	0	0	0	0	1	0	0	0	11487	652	23	1	308	1	PAX3	2	223066834	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	18760844	223066834	20132539	12	41527											
ATRIP	84126	bcgsc.ca	37	3	48498818	48498818	+	Splice_Site	SNP	T	T	C	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	48498818	T	C	48498818	5	2	682	1	0	0	0	0	0	0	1	0	1205	1652	57	3	849	3	ATRIP	3	48498818	Splice_Site	SNP	T	TCGA-KL-8344-01A-11D-2310-10		48498818	149523612	13	41528											
ACTR8	93973	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	53914090	53914090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	53914090	G	T	53914090	3	4	682	1	0	0	0	0	1	0	0	0	217	1029	36	4	1752	4	ACTR8	3	53914090	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10	5415272	53914090	144108340	14	41529											
FAM55C	91775	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	101540561	101540561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	101540561	C	G	101540561	3	3	682	1	0	0	0	0	1	0	0	0	5593	845	30	4	1461	4	FAM55C	3	101540561	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	47626471	101540561	96481869	15	41530											
EIF4G1	1981	mdanderson.org	37	3	184039769	184039770	+	Silent	DNP	GA	GA	AG	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	AG	184039770	GA	AG	184039769	2	1	682	1	0	0	0	0	0	0	0	1	5038	1174	41	2		2	EIF4G1	3	184039769	Silent	DNP	GA	TCGA-KL-8344-01A-11D-2310-10	82499208	184039769	13982661	16	41531	551	2									
EIF4G1	1981	mdanderson.org	37	3	184039775	184039775	+	Missense_Mutation	SNP	C	C	A	rs200221361		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	184039775	C	A	184039775	3	1	682	1	0	0	0	0	1	0	0	0	5038	710	25	4	1433	4	EIF4G1	3	184039775	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	6	184039775	13982655	17	41532	551	2									
MUC4	4585	mdanderson.org	37	3	195506089	195506089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	195506089	G	A	195506089	3	1	682	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195506089	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10	11466314	195506089	2516341	18	41533											
C4orf32	132720	hgsc.bcm.edu	37	4	113066760	113066760	+	Silent	SNP	G	G	A	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	113066760	G	A	113066760	2	1	682	1	0	0	0	0	0	0	0	1	2264	1306	46	2		2	C4orf32	4	113066760	Silent	SNP	G	TCGA-KL-8344-01A-11D-2310-10		113066760	78087516	19	41534											
KIAA1109	84162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	123160846	123160846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	123160846	G	A	123160846	3	1	682	1	0	0	0	0	1	0	0	0	8215	1029	36	2	4115	2	KIAA1109	4	123160846	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10	10094086	123160846	67993430	20	41535											
RASA1	5921	broad.mit.edu	37	5	86564705	86564706	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	86564706	-	G	86564705	7	5	682	1	0	1	1	0	0	0	0	0	13073	1821	63	0	439	0	RASA1	5	86564705	Frame_Shift_Ins	INS	-	TCGA-KL-8344-01A-11D-2310-10		86564705	94350555	21	41536											
HAVCR1	26762	ucsc.edu	37	5	156479572	156479572	+	Missense_Mutation	SNP	A	A	G	rs2862716	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	156479572	A	G	156479572	3	3	682	1	0	0	0	0	1	0	0	0	6980	217	8	3	645	3	HAVCR1	5	156479572	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	69914867	156479572	24435688	22	41537											
EHMT2	10919	broad.mit.edu;mdanderson.org;bcgsc.ca	37	6	31848534	31848534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	31848534	C	A	31848534	3	1	682	1	0	0	0	0	1	0	0	0	4986	652	23	4	272	4	EHMT2	6	31848534	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10		31848534	139266533	23	41538											
TTBK1	84630	ucsc.edu;bcgsc.ca	37	6	43230987	43230987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	43230987	A	G	43230987	3	3	682	1	0	0	0	0	1	0	0	0	16688	275	10	3	1931	3	TTBK1	6	43230987	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	11382453	43230987	127884080	24	41539											
SENP6	26054	broad.mit.edu	37	6	76386858	76386858	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	-	76386858	T	-	76386858	7	5	682	1	0	1	0	1	0	0	0	0	14063	1490	52	0	1788	0	SENP6	6	76386858	Frame_Shift_Del	DEL	T	TCGA-KL-8344-01A-11D-2310-10	33155871	76386858	94728209	25	41540											
SESN1	27244	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	109315685	109315685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	109315685	C	A	109315685	3	1	682	1	0	0	0	0	1	0	0	0	14137	565	20	4	575	4	SESN1	6	109315685	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	32928827	109315685	61799382	26	41541											
CCDC28A	25901	bcgsc.ca	37	6	139101036	139101036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	139101036	T	C	139101036	3	2	682	1	0	0	0	0	1	0	0	0	2804	1551	54	3	516	3	CCDC28A	6	139101036	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	29785351	139101036	32014031	27	41542											
PCLO	27445	broad.mit.edu	37	7	82579183	82579183	+	Missense_Mutation	SNP	T	T	C	rs201013392		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	82579183	T	C	82579183	3	2	682	1	0	0	0	0	1	0	0	0	11590	1667	58	3	4804	3	PCLO	7	82579183	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10		82579183	76559480	28	41543											
ANKIB1	54467	bcgsc.ca	37	7	91948698	91948698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	91948698	C	T	91948698	3	4	682	1	0	0	0	0	1	0	0	0	630	855	30	2	551	2	ANKIB1	7	91948698	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	9369515	91948698	67189965	29	41544											
RB1CC1	9821	broad.mit.edu	37	8	53586752	53586752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	53586752	T	C	53586752	3	2	682	1	0	0	0	0	1	0	0	0	13112	1617	56	3	4201	3	RB1CC1	8	53586752	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10		53586752	92777270	30	41545											
ODF1	4956	ucsc.edu;mdanderson.org	37	8	103573033	103573033	+	Missense_Mutation	SNP	A	A	G	rs62523272	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	103573033	A	G	103573033	3	3	682	1	0	0	0	0	1	0	0	0	10833	43	2	3	680	3	ODF1	8	103573033	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	49986281	103573033	42790989	31	41546											
SYBU	55638	broad.mit.edu;mdanderson.org;bcgsc.ca	37	8	110587964	110587964	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	110587964	A	T	110587964	3	4	682	1	0	0	0	0	1	0	0	0	15439	188	7	5	832	5	SYBU	8	110587964	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	7014931	110587964	35776058	32	41547											
JAK2	3717	ucsc.edu	37	9	5073722	5073722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	5073722	A	G	5073722	3	3	682	1	0	0	0	0	1	0	0	0	7945	333	12	3	1847	3	JAK2	9	5073722	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10		5073722	136139709	33	41548											
RC3H2	54542	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	125616244	125616244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	125616244	A	G	125616244	3	3	682	1	0	0	0	0	1	0	0	0	13180	420	15	3	565	3	RC3H2	9	125616244	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	120542522	125616244	15597187	34	41549											
RAPGEF1	2889	broad.mit.edu;bcgsc.ca	37	9	134504010	134504010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	134504010	T	C	134504010	3	2	682	1	0	0	0	0	1	0	0	0	13056	1638	57	3	2409	3	RAPGEF1	9	134504010	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	8887766	134504010	6709421	35	41550											
ARID5B	84159	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	10	63851395	63851395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	63851395	A	G	63851395	3	3	682	1	0	0	0	0	1	0	0	0	922	411	15	3	2211	3	ARID5B	10	63851395	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10		63851395	71683352	36	41551											
TALDO1	6888	broad.mit.edu	37	11	763428	763428	+	Silent	SNP	T	T	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	763428	T	G	763428	2	3	682	1	0	0	0	0	0	0	0	1	15555	1683	59	5		5	TALDO1	11	763428	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10		763428	134243088	37	41552											
MUC2	4583	mdanderson.org	37	11	1093158	1093158	+	Silent	SNP	T	T	C	rs202045556		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	1093158	T	C	1093158	2	2	682	1	0	0	0	0	0	0	0	1	9982	1509	53	3		3	MUC2	11	1093158	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10	329730	1093158	133913358	38	41553											
OSBPL5	114879	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	3114269	3114269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	3114269	C	T	3114269	3	4	682	1	0	0	0	0	1	0	0	0	11287	536	19	1	699	1	OSBPL5	11	3114269	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	2021111	3114269	131892247	39	41554											
LRRC4C	57689	broad.mit.edu;mdanderson.org	37	11	40136544	40136544	+	Silent	SNP	C	C	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	40136544	C	G	40136544	2	3	682	1	0	0	0	0	0	0	0	1	9015	842	30	4		4	LRRC4C	11	40136544	Silent	SNP	C	TCGA-KL-8344-01A-11D-2310-10	37022275	40136544	94869972	40	41555											
OR4A16	81327	mdanderson.org	37	11	55111509	55111509	+	Missense_Mutation	SNP	T	T	C	rs75872349	by1000genomes	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	55111509	T	C	55111509	3	2	682	1	0	0	0	0	1	0	0	0	11048	1551	54	3	835	3	OR4A16	11	55111509	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	14974965	55111509	79895007	41	41556											
CASP4	837	bcgsc.ca	37	11	104817887	104817887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	104817887	A	G	104817887	3	3	682	1	0	0	0	0	1	0	0	0	2675	304	11	3	183	3	CASP4	11	104817887	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	49706378	104817887	30188629	42	41557											
TMPRSS13	84000	ucsc.edu;mdanderson.org	37	11	117789317	117789317	+	Silent	SNP	T	T	C	rs201369736		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	117789317	T	C	117789317	2	2	682	1	0	0	0	0	0	0	0	1	16257	1567	55	3		3	TMPRSS13	11	117789317	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10	12971430	117789317	17217199	43	41558											
LRRK2	120892	mdanderson.org	37	12	40728900	40728900	+	Silent	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	40728900	A	G	40728900	2	3	682	1	0	0	0	0	0	0	0	1	9040	69	3	3		3	LRRK2	12	40728900	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10		40728900	93122995	44	41559											
WDR66	144406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	122406016	122406016	+	Silent	SNP	C	C	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	122406016	C	T	122406016	2	4	682	1	0	0	0	0	0	0	0	1	17329	805	28	2		2	WDR66	12	122406016	Silent	SNP	C	TCGA-KL-8344-01A-11D-2310-10	81677116	122406016	11445879	45	41560											
PITPNM2	57605	broad.mit.edu	37	12	123481375	123481375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	123481375	T	G	123481375	3	3	682	1	0	0	0	0	1	0	0	0	11958	1696	59	5	2554	5	PITPNM2	12	123481375	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	1075359	123481375	10370520	46	41561											
COL4A1	1282	broad.mit.edu;bcgsc.ca	37	13	110833715	110833715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	110833715	T	C	110833715	3	2	682	1	0	0	0	0	1	0	0	0	3691	1667	58	3	2988	3	COL4A1	13	110833715	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10		110833715	4336163	47	41562											
OR11H12	440153	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	14	19377804	19377804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	19377804	C	A	19377804	3	1	682	1	0	0	0	0	1	0	0	0	10934	826	29	4	213	4	OR11H12	14	19377804	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10		19377804	87971736	48	41563											
DICER1	23405	hgsc.bcm.edu;ucsc.edu	37	14	95579561	95579561	+	Silent	SNP	T	T	C	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	95579561	T	C	95579561	2	2	682	1	0	0	0	0	0	0	0	1	4523	1449	50	3		3	DICER1	14	95579561	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10	76201757	95579561	11769979	49	41564											
MGA	23269	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	42034895	42034895	+	Silent	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	42034895	A	G	42034895	2	3	682	1	0	0	0	0	0	0	0	1	9547	146	6	3		3	MGA	15	42034895	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10		42034895	60496497	50	41565											
FBN1	2200	broad.mit.edu	37	15	48812976	48812976	+	Missense_Mutation	SNP	C	C	T	rs146726731	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	48812976	C	T	48812976	3	4	682	1	0	0	0	0	1	0	0	0	5709	652	23	1	7816	1	FBN1	15	48812976	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	6778081	48812976	53718416	51	41566											
PDPR	55066	broad.mit.edu;mdanderson.org	37	16	70161181	70161181	+	Silent	SNP	C	C	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	70161181	C	T	70161181	2	4	682	1	0	0	0	0	0	0	0	1	11696	581	21	2		2	PDPR	16	70161181	Silent	SNP	C	TCGA-KL-8344-01A-11D-2310-10		70161181	20193572	52	41567											
WDR59	79726	ucsc.edu	37	16	74942865	74942865	+	Silent	SNP	T	T	C	rs141093453	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	74942865	T	C	74942865	2	2	682	1	0	0	0	0	0	0	0	1	17320	1393	49	3		3	WDR59	16	74942865	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10	4781684	74942865	15411888	53	41568											
TTC19	54902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	15930770	15930770	+	Silent	SNP	C	C	T	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	15930770	C	T	15930770	2	4	682	1	0	0	0	0	0	0	0	1	16698	477	17	2		2	TTC19	17	15930770	Silent	SNP	C	TCGA-KL-8344-01A-11D-2310-10		15930770	65264440	54	41569											
GGNBP2	79893	broad.mit.edu	37	17	34942391	34942391	+	Silent	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	34942391	A	G	34942391	2	3	682	1	0	0	0	0	0	0	0	1	6366	40	2	3		3	GGNBP2	17	34942391	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10	19011621	34942391	46252819	55	41570											
SYT4	6860	hgsc.bcm.edu;ucsc.edu	37	18	40850387	40850387	+	Silent	SNP	T	T	C	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	40850387	T	C	40850387	2	2	682	1	0	0	0	0	0	0	0	1	15488	1770	62	3		3	SYT4	18	40850387	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10		40850387	37226861	56	41571											
ZNF98	148198	mdanderson.org	37	19	22575313	22575313	+	Missense_Mutation	SNP	C	C	G	rs71236900	bycluster;byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	22575313	C	G	22575313	3	3	682	1	0	0	0	0	1	0	0	0	18215	922	32	4	998	4	ZNF98	19	22575313	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10		22575313	36553670	57	41572											
ZNF98	148198	broad.mit.edu;mdanderson.org	37	19	22575373	22575373	+	Missense_Mutation	SNP	C	C	T	rs684900	bycluster	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	T	22575373	C	T	22575373	3	4	682	1	0	0	0	0	1	0	0	0	18215	739	26	2	1058	2	ZNF98	19	22575373	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	60	22575373	36553610	58	41573											
FBXO17	115290	broad.mit.edu	37	19	39440795	39440795	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	-	39440795	C	-	39440795	7	5	682	1	0	1	0	1	0	0	0	0	5737	726	26	0	691	0	FBXO17	19	39440795	Frame_Shift_Del	DEL	C	TCGA-KL-8344-01A-11D-2310-10	16865422	39440795	19688188	59	41574											
NOSIP	51070	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	50059875	50059875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	C	50059875	T	C	50059875	3	2	682	1	0	0	0	0	1	0	0	0	10552	1551	54	3	261	3	NOSIP	19	50059875	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	10619080	50059875	9069108	60	41575											
ZNF814	730051	bcgsc.ca	37	19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	G	58385788	A	G	58385788	3	3	682	1	0	0	0	0	1	0	0	0	18188	362	13	3	1601	3	ZNF814	19	58385788	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	8325913	58385788	743195	61	41576											
TFAP2C	7022	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	20	55208518	55208518	+	Silent	SNP	G	G	A	rs146916115	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	55208518	G	A	55208518	2	1	682	1	0	0	0	0	0	0	0	1	15801	1074	38	1		1	TFAP2C	20	55208518	Silent	SNP	G	TCGA-KL-8344-01A-11D-2310-10		55208518	7817002	62	41577											
FAM118A	55007	mdanderson.org	37	22	45723898	45723898	+	Missense_Mutation	SNP	G	G	A	rs62001863	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	A	45723898	G	A	45723898	3	1	682	1	0	0	0	0	1	0	0	0	5415	1116	39	1	486	1	FAM118A	22	45723898	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10		45723898	5580668	63	41578											
AR	367	hgsc.bcm.edu	37	X	66765207	66765208	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a	AG	66765208	GC	AG	66765207	3	1	682	1	0	0	0	0	1	0	0	0	836	962	34	2	221	2	AR	23	66765207	Missense_Mutation	DNP	GC	TCGA-KL-8344-01A-11D-2310-10		66765207	88505353	64	41579											
KIAA2013	90231	mdanderson.org	37	1	11985396	11985396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	11985396	A	G	11985396	3	3	683	1	0	0	0	0	1	0	0	0	8274	304	11	3	1017	3	KIAA2013	1	11985396	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10		11985396	237265225	1	41580											
KIF2C	11004	ucsc.edu	37	1	45228320	45228320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	45228320	A	G	45228320	3	3	683	1	0	0	0	0	1	0	0	0	8306	304	11	3	2035	3	KIF2C	1	45228320	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	33242924	45228320	204022301	2	41581											
AGBL4	84871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	49100247	49100247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	49100247	C	T	49100247	3	4	683	1	0	0	0	0	1	0	0	0	377	536	19	1	666	1	AGBL4	1	49100247	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	3871927	49100247	200150374	3	41582											
LEPR	3953	ucsc.edu;bcgsc.ca	37	1	66083683	66083683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	66083683	A	G	66083683	3	3	683	1	0	0	0	0	1	0	0	0	8735	43	2	3	2303	3	LEPR	1	66083683	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	16983436	66083683	183166938	4	41583											
ZNHIT6	54680	broad.mit.edu	37	1	86167918	86167918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	86167918	C	T	86167918	3	4	683	1	0	0	0	0	1	0	0	0	18221	652	23	1	495	1	ZNHIT6	1	86167918	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	20084235	86167918	163082703	5	41584											
SPAG17	200162	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	118596629	118596629	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	118596629	A	T	118596629	3	4	683	1	0	0	0	0	1	0	0	0	14992	304	11	5	3977	5	SPAG17	1	118596629	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	32428711	118596629	130653992	6	41585											
FMO2	2327	ucsc.edu	37	1	171165803	171165803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	171165803	G	T	171165803	3	4	683	1	0	0	0	0	1	0	0	0	5962	1377	48	4	347	4	FMO2	1	171165803	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	52569174	171165803	78084818	7	41586											
CFHR3	10878	hgsc.bcm.edu	37	1	196744041	196744041	+	Silent	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	196744041	C	T	196744041	2	4	683	1	0	0	0	0	0	0	0	1	3288	912	32	2		2	CFHR3	1	196744041	Silent	SNP	C	TCGA-KL-8345-01A-11D-2310-10	25578238	196744041	52506580	8	41587											
CTSE	1510	bcgsc.ca	37	1	206327526	206327526	+	Missense_Mutation	SNP	T	T	C	rs145082936		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	C	206327526	T	C	206327526	3	2	683	1	0	0	0	0	1	0	0	0	4035	1551	54	3	737	3	CTSE	1	206327526	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10	9583485	206327526	42923095	9	41588											
KIDINS220	57498	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	8871660	8871660	+	Silent	SNP	G	G	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	8871660	G	A	8871660	2	1	683	1	0	0	0	0	0	0	0	1	8278	929	33	2		2	KIDINS220	2	8871660	Silent	SNP	G	TCGA-KL-8345-01A-11D-2310-10		8871660	234327713	10	41589											
EHBP1	23301	broad.mit.edu	37	2	63223821	63223821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	63223821	C	A	63223821	3	1	683	1	0	0	0	0	1	0	0	0	4977	710	25	4	3314	4	EHBP1	2	63223821	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	54352161	63223821	179975552	11	41590											
LRP1B	53353	broad.mit.edu	37	2	141819781	141819781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	C	141819781	T	C	141819781	3	2	683	1	0	0	0	0	1	0	0	0	8962	1435	50	3	13060	3	LRP1B	2	141819781	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10	78595960	141819781	101379592	12	41591											
TLK1	9874	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	171871451	171871451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	171871451	G	T	171871451	3	4	683	1	0	0	0	0	1	0	0	0	15955	1319	46	4	1092	4	TLK1	2	171871451	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	30051670	171871451	71327922	13	41592											
TTN	7273	broad.mit.edu	37	2	179480474	179480474	+	Silent	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	179480474	A	G	179480474	2	3	683	1	0	0	0	0	0	0	0	1	16747	330	12	3		3	TTN	2	179480474	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	7609023	179480474	63718899	14	41593											
IGFBP5	3488	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	217559222	217559222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	217559222	G	T	217559222	3	4	683	1	0	0	0	0	1	0	0	0	7589	991	35	4	557	4	IGFBP5	2	217559222	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	38078748	217559222	25640151	15	41594											
TTLL4	9654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	219610500	219610500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	219610500	C	T	219610500	3	4	683	1	0	0	0	0	1	0	0	0	16741	527	19	1	1891	1	TTLL4	2	219610500	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	2051278	219610500	23588873	16	41595											
MAGI1	9223	mdanderson.org	37	3	65425591	65425591	+	Silent	SNP	T	T	C	rs79701778	bycluster;byfrequency	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	C	65425591	T	C	65425591	2	2	683	1	0	0	0	0	0	0	0	1	9197	1722	60	3		3	MAGI1	3	65425591	Silent	SNP	T	TCGA-KL-8345-01A-11D-2310-10		65425591	132596839	17	41596	552	2									
MAGI1	9223	mdanderson.org	37	3	65425594	65425594	+	Silent	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	65425594	C	T	65425594	2	4	683	1	0	0	0	0	0	0	0	1	9197	796	28	2		2	MAGI1	3	65425594	Silent	SNP	C	TCGA-KL-8345-01A-11D-2310-10	3	65425594	132596836	18	41597	552	2									
GRAMD1C	54762	hgsc.bcm.edu;mdanderson.org	37	3	113623086	113623086	+	Silent	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	113623086	A	G	113623086	2	3	683	1	0	0	0	0	0	0	0	1	6756	11	1	3		3	GRAMD1C	3	113623086	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	48197492	113623086	84399344	19	41598											
RGS12	6002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	3417849	3417849	+	Splice_Site	SNP	G	G	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	3417849	G	A	3417849	5	1	683	1	0	0	0	0	0	0	1	0	13308	1275	44	2	2508	2	RGS12	4	3417849	Splice_Site	SNP	G	TCGA-KL-8345-01A-11D-2310-10		3417849	187736427	20	41599											
EXOC1	55763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	56737009	56737009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	56737009	C	T	56737009	3	4	683	1	0	0	0	0	1	0	0	0	5303	594	21	2	787	2	EXOC1	4	56737009	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	53319160	56737009	134417267	21	41600											
RASGEF1B	153020	ucsc.edu	37	4	82368697	82368697	+	Silent	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	82368697	A	G	82368697	2	3	683	1	0	0	0	0	0	0	0	1	13083	233	9	3		3	RASGEF1B	4	82368697	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	25631688	82368697	108785579	22	41601											
DSPP	1834	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	88535754	88535754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	88535754	G	T	88535754	3	4	683	1	0	0	0	0	1	0	0	0	4784	971	34	4	1954	4	DSPP	4	88535754	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	6167057	88535754	102618522	23	41602											
ANK2	287	hgsc.bcm.edu;ucsc.edu	37	4	114276401	114276401	+	Silent	SNP	G	G	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	114276401	G	A	114276401	2	1	683	1	0	0	0	0	0	0	0	1	621	1219	43	2		2	ANK2	4	114276401	Silent	SNP	G	TCGA-KL-8345-01A-11D-2310-10	25740647	114276401	76877875	24	41603											
FAT4	79633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	126389910	126389910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	C	126389910	T	C	126389910	3	2	683	1	0	0	0	0	1	0	0	0	5699	1551	54	3	12185	3	FAT4	4	126389910	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10	12113509	126389910	64764366	25	41604											
PALLD	23022	broad.mit.edu	37	4	169837136	169837136	+	Silent	SNP	T	T	C	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	C	169837136	T	C	169837136	2	2	683	1	0	0	0	0	0	0	0	1	11414	1432	50	3		3	PALLD	4	169837136	Silent	SNP	T	TCGA-KL-8345-01A-11D-2310-10	43447226	169837136	21317140	26	41605											
HMGCS1	3157	broad.mit.edu	37	5	43297257	43297257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	C	43297257	T	C	43297257	3	2	683	1	0	0	0	0	1	0	0	0	7239	1667	58	3	1004	3	HMGCS1	5	43297257	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10		43297257	137618003	27	41606											
SH3TC2	79628	broad.mit.edu	37	5	148407015	148407015	+	Silent	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	148407015	A	G	148407015	2	3	683	1	0	0	0	0	0	0	0	1	14275	273	10	3		3	SH3TC2	5	148407015	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	105109758	148407015	32508245	28	41607											
GABBR1	2550	ucsc.edu	37	6	29580384	29580384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	29580384	A	G	29580384	3	3	683	1	0	0	0	0	1	0	0	0	6162	159	6	3	1355	3	GABBR1	6	29580384	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10		29580384	141534683	29	41608											
FAM26F	441168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	116784510	116784510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	116784510	G	A	116784510	3	1	683	1	0	0	0	0	1	0	0	0	5558	1058	37	1	596	1	FAM26F	6	116784510	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	87204126	116784510	54330557	30	41609											
LRCH4	4034	broad.mit.edu	37	7	100174729	100174729	+	Silent	SNP	C	C	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	100174729	C	A	100174729	2	1	683	1	0	0	0	0	0	0	0	1	8942	465	17	4		4	LRCH4	7	100174729	Silent	SNP	C	TCGA-KL-8345-01A-11D-2310-10		100174729	58963934	31	41610											
PODXL	5420	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	131189141	131189141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	131189141	C	A	131189141	3	1	683	1	0	0	0	0	1	0	0	0	12187	855	30	4	74	4	PODXL	7	131189141	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	31014412	131189141	27949522	32	41611											
VIPR2	7434	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	158823446	158823446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	158823446	C	A	158823446	3	1	683	1	0	0	0	0	1	0	0	0	17182	652	23	4	142	4	VIPR2	7	158823446	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	27634305	158823446	315217	33	41612											
TJP2	9414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	71845079	71845079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	71845079	T	G	71845079	3	3	683	1	0	0	0	0	1	0	0	0	15942	1809	63	5	1801	5	TJP2	9	71845079	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10		71845079	69368352	34	41613											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	10	89711920	89711926	+	Frame_Shift_Del	DEL	TACCTGT	TACCTGT	-	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	TACCTGT	TACCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	-	89711926	TACCTGT	-	89711920	7	5	683	1	0	1	0	1	0	0	0	0	12748	1522	53	0	560	0	PTEN	10	89711920	Frame_Shift_Del	DEL	TACCTGT	TCGA-KL-8345-01A-11D-2310-10		89711920	45822827	35	41614	553	2									
PTEN	5728	bcgsc.ca	37	10	89711921	89711927	+	Frame_Shift_Del	DEL	TACCTGT	TACCTGT	-	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	TACCTGT	TACCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	-	89711927	TACCTGT	-	89711921	7	5	683	1	0	1	0	1	0	0	0	0	12748	391	14	0	561	0	PTEN	10	89711921	Frame_Shift_Del	DEL	TACCTGT	TCGA-KL-8345-01A-11D-2310-10	1	89711921	45822826	36	41615	553	2									
MTCH2	23788	broad.mit.edu;hgsc.bcm.edu	37	11	47653265	47653265	+	Splice_Site	SNP	T	T	C	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	C	47653265	T	C	47653265	5	2	683	1	0	0	0	0	0	0	1	0	9921	1536	53	3	575	3	MTCH2	11	47653265	Splice_Site	SNP	T	TCGA-KL-8345-01A-11D-2310-10		47653265	87353251	37	41616											
OR1S2	219958	mdanderson.org	37	11	57971190	57971190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	57971190	G	A	57971190	3	1	683	1	0	0	0	0	1	0	0	0	10980	1029	36	2	516	2	OR1S2	11	57971190	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	10317925	57971190	77035326	38	41617											
RASSF3	283349	mdanderson.org	37	12	65004520	65004520	+	Silent	SNP	A	A	G	rs77813527	byfrequency	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	65004520	A	G	65004520	2	3	683	1	0	0	0	0	0	0	0	1	13100	40	2	3		3	RASSF3	12	65004520	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10		65004520	68847375	39	41618											
PABPC3	5042	mdanderson.org	37	13	25671795	25671795	+	Missense_Mutation	SNP	C	C	T	rs113416318	byfrequency	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	25671795	C	T	25671795	3	4	683	1	0	0	0	0	1	0	0	0	11372	536	19	1	1461	1	PABPC3	13	25671795	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10		25671795	89498083	40	41619											
COMMD6	170622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	76111919	76111919	+	Missense_Mutation	SNP	G	G	A	rs143172831	alternate_allele	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	76111919	G	A	76111919	3	1	683	1	0	0	0	0	1	0	0	0	3722	1116	39	1	293	1	COMMD6	13	76111919	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	50440124	76111919	39057959	41	41620											
APEX1	328	broad.mit.edu	37	14	20925577	20925578	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	-	20925578	CT	-	20925577	7	5	683	1	0	1	0	1	0	0	0	0	769	564	20	0	881	0	APEX1	14	20925577	Frame_Shift_Del	DEL	CT	TCGA-KL-8345-01A-11D-2310-10		20925577	86423963	42	41621											
C14orf21	161424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	24773484	24773484	+	Splice_Site	SNP	G	G	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	24773484	G	A	24773484	5	1	683	1	0	0	0	0	0	0	1	0	1771	1275	44	2	1678	2	C14orf21	14	24773484	Splice_Site	SNP	G	TCGA-KL-8345-01A-11D-2310-10	3847907	24773484	82576056	43	41622											
BEGAIN	57596	ucsc.edu	37	14	101005154	101005154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	101005154	G	T	101005154	3	4	683	1	0	0	0	0	1	0	0	0	1397	1319	46	4	851	4	BEGAIN	14	101005154	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	76231670	101005154	6344386	44	41623											
CACNA1H	8912	ucsc.edu	37	16	1260601	1260601	+	Missense_Mutation	SNP	G	G	A	rs28365125		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	1260601	G	A	1260601	3	1	683	1	0	0	0	0	1	0	0	0	2547	1145	40	1	4062	1	CACNA1H	16	1260601	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10		1260601	89094152	45	41624											
CORO7	79585	broad.mit.edu;mdanderson.org;bcgsc.ca	37	16	4445319	4445319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	4445319	C	T	4445319	3	4	683	1	0	0	0	0	1	0	0	0	3761	826	29	2	2279	2	CORO7	16	4445319	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	3184718	4445319	85909434	46	41625											
KRT38	8687	mdanderson.org	37	17	39595539	39595539	+	Silent	SNP	A	A	G	rs117668654	byfrequency	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	39595539	A	G	39595539	2	3	683	1	0	0	0	0	0	0	0	1	8482	214	8	3		3	KRT38	17	39595539	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10		39595539	41599671	47	41626											
BPTF	2186	hgsc.bcm.edu;bcgsc.ca	37	17	65908787	65908787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	65908787	C	T	65908787	3	4	683	1	0	0	0	0	1	0	0	0	1497	739	26	2	5215	2	BPTF	17	65908787	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	26313248	65908787	15286423	48	41627											
SSTR2	6752	broad.mit.edu	37	17	71165682	71165682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	71165682	A	G	71165682	3	3	683	1	0	0	0	0	1	0	0	0	15210	72	3	3	226	3	SSTR2	17	71165682	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	5256895	71165682	10029528	49	41628											
CXXC1	30827	broad.mit.edu;mdanderson.org;bcgsc.ca	37	18	47812501	47812501	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	47812501	T	G	47812501	3	3	683	1	0	0	0	0	1	0	0	0	4099	1667	58	5	1680	5	CXXC1	18	47812501	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10		47812501	30264747	50	41629											
MUC16	94025	broad.mit.edu	37	19	9068199	9068199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	C	9068199	T	C	9068199	3	2	683	1	0	0	0	0	1	0	0	0	9980	1609	56	3	24604	3	MUC16	19	9068199	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10		9068199	50060784	51	41630											
MAG	4099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	35800935	35800935	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	35800935	G	T	35800935	4	4	683	1	0	0	0	0	0	1	0	0	9169	1175	41	4	1412	4	MAG	19	35800935	Nonsense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	26732736	35800935	23328048	52	41631											
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	21	41514495	41514495	+	Silent	SNP	G	G	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	41514495	G	A	41514495	2	1	683	1	0	0	0	0	0	0	0	1	4770	1277	45	2		2	DSCAM	21	41514495	Silent	SNP	G	TCGA-KL-8345-01A-11D-2310-10		41514495	6615400	53	41632											
GAB4	128954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	17443634	17443634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	17443634	C	T	17443634	3	4	683	1	0	0	0	0	1	0	0	0	6158	768	27	1	14	1	GAB4	22	17443634	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10		17443634	33860932	54	41633											
ARVCF	421	ucsc.edu	37	22	19967489	19967489	+	Silent	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	19967489	A	G	19967489	2	3	683	1	0	0	0	0	0	0	0	1	1003	146	6	3		3	ARVCF	22	19967489	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	2523855	19967489	31337077	55	41634											
CSF2RB	1439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	37333576	37333576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	A	37333576	G	A	37333576	3	1	683	1	0	0	0	0	1	0	0	0	3937	1087	38	1	1776	1	CSF2RB	22	37333576	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	17366087	37333576	13970990	56	41635											
CELSR1	9620	broad.mit.edu;mdanderson.org	37	22	46763729	46763729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	46763729	A	G	46763729	3	3	683	1	0	0	0	0	1	0	0	0	3223	304	11	3	1100	3	CELSR1	22	46763729	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	9430153	46763729	4540837	57	41636											
SH3KBP1	30011	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	19854348	19854348	+	Silent	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	19854348	C	T	19854348	2	4	683	1	0	0	0	0	0	0	0	1	14268	871	31	1		1	SH3KBP1	23	19854348	Silent	SNP	C	TCGA-KL-8345-01A-11D-2310-10		19854348	135416212	58	41637											
KDM5C	8242	broad.mit.edu;mdanderson.org	37	X	53239928	53239928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	53239928	C	T	53239928	3	4	683	1	0	0	0	0	1	0	0	0	8142	623	22	2	3331	2	KDM5C	23	53239928	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	33385580	53239928	102030632	59	41638											
TAF1	6872	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	70627428	70627428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	T	70627428	C	T	70627428	3	4	683	1	0	0	0	0	1	0	0	0	15525	681	24	2	4278	2	TAF1	23	70627428	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	17387500	70627428	84643132	60	41639											
SLITRK2	84631	broad.mit.edu	37	X	144906354	144906354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141	G	144906354	A	G	144906354	3	3	683	1	0	0	0	0	1	0	0	0	14756	449	16	3	2413	3	SLITRK2	23	144906354	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	74278926	144906354	10364206	61	41640											
PRAMEF2	65122	mdanderson.org	37	1	12921594	12921594	+	Nonsense_Mutation	SNP	C	C	G	rs2982090		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	12921594	C	G	12921594	4	3	684	1	0	0	0	0	0	1	0	0	12445	838	29	4	1395	4	PRAMEF2	1	12921594	Nonsense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10		12921594	236329027	1	41641											
FAM131C	348487	mdanderson.org	37	1	16384986	16384986	+	Silent	SNP	G	G	T	rs28496958	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	16384986	G	T	16384986	2	4	684	1	0	0	0	0	0	0	0	1	5445	1161	41	4		4	FAM131C	1	16384986	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	3463392	16384986	232865635	2	41642											
NR0B2	8431	ucsc.edu	37	1	27240351	27240351	+	Silent	SNP	G	G	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	27240351	G	A	27240351	2	1	684	1	0	0	0	0	0	0	0	1	10621	1335	47	2		2	NR0B2	1	27240351	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	10855365	27240351	222010270	3	41643											
COL16A1	1307	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	32148832	32148832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	32148832	C	T	32148832	3	4	684	1	0	0	0	0	1	0	0	0	3675	652	23	1	2526	1	COL16A1	1	32148832	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	4908481	32148832	217101789	4	41644											
TAL1	6886	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	47685621	47685621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	47685621	G	T	47685621	3	4	684	1	0	0	0	0	1	0	0	0	15553	1029	36	4	232	4	TAL1	1	47685621	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	15536789	47685621	201565000	5	41645											
CELSR2	1952	ucsc.edu	37	1	109810544	109810544	+	Silent	SNP	C	C	A	rs2281894	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	109810544	C	A	109810544	2	1	684	1	0	0	0	0	0	0	0	1	3224	697	25	4		4	CELSR2	1	109810544	Silent	SNP	C	TCGA-KL-8346-01A-11D-2310-10	62124923	109810544	139440077	6	41646											
OR10K1	391109	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	158436256	158436256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	158436256	G	A	158436256	3	1	684	1	0	0	0	0	1	0	0	0	10920	1058	37	1	907	1	OR10K1	1	158436256	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	48625712	158436256	90814365	7	41647											
SPTA1	6708	broad.mit.edu	37	1	158647558	158647558	+	Silent	SNP	G	G	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	158647558	G	T	158647558	2	4	684	1	0	0	0	0	0	0	0	1	15128	1306	46	4		4	SPTA1	1	158647558	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	211302	158647558	90603063	8	41648											
ASPM	259266	hgsc.bcm.edu	37	1	197073057	197073057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	197073057	T	C	197073057	3	2	684	1	0	0	0	0	1	0	0	0	1056	1406	49	3	5153	3	ASPM	1	197073057	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	38425499	197073057	52177564	9	41649											
USH2A	7399	ucsc.edu	37	1	215916578	215916578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	215916578	A	G	215916578	3	3	684	1	0	0	0	0	1	0	0	0	17048	72	3	3	4175	3	USH2A	1	215916578	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	18843521	215916578	33334043	10	41650											
SLC4A5	57835	bcgsc.ca	37	2	74480132	74480132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	74480132	G	A	74480132	3	1	684	1	0	0	0	0	1	0	0	0	14670	1203	42	2	2244	2	SLC4A5	2	74480132	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10		74480132	168719241	11	41651											
STARD7	56910	broad.mit.edu	37	2	96861118	96861118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	96861118	G	A	96861118	3	1	684	1	0	0	0	0	1	0	0	0	15274	1086	38	1	680	1	STARD7	2	96861118	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	22380986	96861118	146338255	12	41652											
IL1R2	7850	bcgsc.ca	37	2	102632493	102632493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	102632493	G	A	102632493	3	1	684	1	0	0	0	0	1	0	0	0	7666	1145	40	1	503	1	IL1R2	2	102632493	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	5771375	102632493	140566880	13	41653											
POTEE	445582	mdanderson.org	37	2	132021781	132021781	+	Missense_Mutation	SNP	A	A	T	rs77172375	bycluster	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	132021781	A	T	132021781	3	4	684	1	0	0	0	0	1	0	0	0	12271	449	16	5	2811	5	POTEE	2	132021781	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	29389288	132021781	111177592	14	41654											
TTN	7273	broad.mit.edu	37	2	179639167	179639167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	179639167	T	C	179639167	3	2	684	1	0	0	0	0	1	0	0	0	16747	1667	58	3	104496	3	TTN	2	179639167	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	47617386	179639167	63560206	15	41655											
RAF1	5894	broad.mit.edu	37	3	12660138	12660138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	12660138	A	G	12660138	3	3	684	1	0	0	0	0	1	0	0	0	13015	333	12	3	1927	3	RAF1	3	12660138	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		12660138	185362292	16	41656											
TBC1D5	9779	broad.mit.edu	37	3	17415993	17415993	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	17415993	C	T	17415993	4	4	684	1	0	0	0	0	0	1	0	0	15635	508	18	2	1709	2	TBC1D5	3	17415993	Nonsense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	4755855	17415993	180606437	17	41657											
TOP2B	7155	broad.mit.edu;hgsc.bcm.edu	37	3	25647566	25647570	+	Frame_Shift_Del	DEL	GAGAA	GAGAA	-	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	GAGAA	GAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	-	25647570	GAGAA	-	25647566	7	5	684	1	0	1	0	1	0	0	0	0	16378	1294	45	0	554	0	TOP2B	3	25647566	Frame_Shift_Del	DEL	GAGAA	TCGA-KL-8346-01A-11D-2310-10	8231573	25647566	172374864	18	41658	554	2									
TOP2B	7155	bcgsc.ca	37	3	25647567	25647571	+	Frame_Shift_Del	DEL	GAGAA	GAGAA	-	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	GAGAA	GAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	-	25647571	GAGAA	-	25647567	7	5	684	1	0	1	0	1	0	0	0	0	16378	304	11	0	555	0	TOP2B	3	25647567	Frame_Shift_Del	DEL	GAGAA	TCGA-KL-8346-01A-11D-2310-10	1	25647567	172374863	19	41659	554	2									
ZNF35	7584	broad.mit.edu	37	3	44700856	44700856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	44700856	A	G	44700856	3	3	684	1	0	0	0	0	1	0	0	0	17874	449	16	3	1011	3	ZNF35	3	44700856	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	19053289	44700856	153321574	20	41660											
CHRD	8646	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	184100469	184100469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	184100469	G	A	184100469	3	1	684	1	0	0	0	0	1	0	0	0	3374	1145	40	1	919	1	CHRD	3	184100469	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	139399613	184100469	13921961	21	41661											
MUC4	4585	mdanderson.org	37	3	195507539	195507539	+	Missense_Mutation	SNP	G	G	A	rs112530244		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	195507539	G	A	195507539	3	1	684	1	0	0	0	0	1	0	0	0	9985	1000	35	2		2	MUC4	3	195507539	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	11407070	195507539	2514891	22	41662			1	105		4	4	5041	N	GC_G_C_A	3.004864e-07
MUC4	4585	mdanderson.org	37	3	195509497	195509498	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	AT	195509498	GC	AT	195509497	3	1	684	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195509497	Missense_Mutation	DNP	GC	TCGA-KL-8346-01A-11D-2310-10	1958	195509497	2512933	23	41663			1	105		4	4	5041	N	GC_G_C_A	3.004864e-07
MUC4	4585	mdanderson.org	37	3	195512549	195512549	+	Missense_Mutation	SNP	A	A	G	rs201832232		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	195512549	A	G	195512549	3	3	684	1	0	0	0	0	1	0	0	0	9985	304	11	3		3	MUC4	3	195512549	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	3052	195512549	2509881	24	41664			1	105		4	4	5041	N	GC_G_C_A	3.004864e-07
MUC4	4585	mdanderson.org	37	3	195512579	195512579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	195512579	C	T	195512579	3	4	684	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195512579	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	30	195512579	2509851	25	41665			1	105		4	4	5041	N	GC_G_C_A	3.004864e-07
CRIPAK	285464	mdanderson.org	37	4	1388524	1388524	+	Silent	SNP	A	A	G	rs55944930	bycluster;byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	1388524	A	G	1388524	2	3	684	1	0	0	0	0	0	0	0	1	3879	146	6	3		3	CRIPAK	4	1388524	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10		1388524	189765752	26	41666											
PDS5A	23244	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	4	39839775	39839775	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	39839775	C	G	39839775	3	3	684	1	0	0	0	0	1	0	0	0	11698	912	32	4	310	4	PDS5A	4	39839775	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	38451251	39839775	151314501	27	41667											
PPM1K	152926	ucsc.edu;mdanderson.org;bcgsc.ca	37	4	89199470	89199470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	89199470	T	C	89199470	3	2	684	1	0	0	0	0	1	0	0	0	12353	1841	64	3	876	3	PPM1K	4	89199470	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	49359695	89199470	101954806	28	41668											
ANK2	287	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	4	114290874	114290874	+	Silent	SNP	G	G	A	rs143290935		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	114290874	G	A	114290874	2	1	684	1	0	0	0	0	0	0	0	1	621	1074	38	1		1	ANK2	4	114290874	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	25091404	114290874	76863402	29	41669											
PCDHA9	9752	mdanderson.org	37	5	140228473	140228473	+	Silent	SNP	A	A	G	rs364063	bycluster;byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	140228473	A	G	140228473	2	3	684	1	0	0	0	0	0	0	0	1	11538	175	7	3		3	PCDHA9	5	140228473	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10		140228473	40686787	30	41670											
ATP10B	23120	broad.mit.edu;mdanderson.org;bcgsc.ca	37	5	160044894	160044894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	160044894	G	A	160044894	3	1	684	1	0	0	0	0	1	0	0	0	1117	1087	38	1	1926	1	ATP10B	5	160044894	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	19816421	160044894	20870366	31	41671											
FAM65B	9750	ucsc.edu	37	6	24825517	24825517	+	Silent	SNP	T	T	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	24825517	T	C	24825517	2	2	684	1	0	0	0	0	0	0	0	1	5607	1606	56	3		3	FAM65B	6	24825517	Silent	SNP	T	TCGA-KL-8346-01A-11D-2310-10		24825517	146289550	32	41672											
TNXB	7148	broad.mit.edu	37	6	31977381	31977381	+	RNA	SNP	T	T	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	31977381	T	C	31977381	1	2	684	0	1	0	0	0	0	0	0	0	16358	1654	58	3		3	TNXB	6	31977381	RNA	SNP	T	TCGA-KL-8346-01A-11D-2310-10	7151864	31977381	139137686	33	41673											
RADIL	55698	bcgsc.ca	37	7	4917349	4917349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	4917349	A	G	4917349	3	3	684	1	0	0	0	0	1	0	0	0	13010	304	11	3	2861	3	RADIL	7	4917349	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		4917349	154221314	34	41674											
WBSCR27	155368	hgsc.bcm.edu	37	7	73254452	73254455	+	Splice_Site	DEL	TGTG	TGTG	-	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	TGTG	TGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	-	73254455	TGTG	-	73254452	8	5	684	1	0	1	0	1	0	0	1	0	17278	1594	55	0	358	0	WBSCR27	7	73254452	Splice_Site	DEL	TGTG	TCGA-KL-8346-01A-11D-2310-10	68337103	73254452	85884211	35	41675											
PRSS1	5644	mdanderson.org	37	7	142459667	142459667	+	Silent	SNP	G	G	A	rs142476093	alternate_allele	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	142459667	G	A	142459667	2	1	684	1	0	0	0	0	0	0	0	1	12624	1335	47	2		2	PRSS1	7	142459667	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	69205215	142459667	16678996	36	41676											
ADRA1A	148	broad.mit.edu	37	8	26722373	26722373	+	Silent	SNP	A	A	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	26722373	A	C	26722373	2	2	684	1	0	0	0	0	0	0	0	1	334	1	1	5		5	ADRA1A	8	26722373	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10		26722373	119641649	37	41677											
KCNV1	27012	broad.mit.edu	37	8	110980349	110980349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	110980349	T	C	110980349	3	2	684	1	0	0	0	0	1	0	0	0	8101	1521	53	3	35	3	KCNV1	8	110980349	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	84257976	110980349	35383673	38	41678											
GDA	9615	ucsc.edu;bcgsc.ca	37	9	74842929	74842929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	74842929	T	C	74842929	3	2	684	1	0	0	0	0	1	0	0	0	6313	1435	50	3	927	3	GDA	9	74842929	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10		74842929	66370502	39	41679											
DUPD1	338599	mdanderson.org;bcgsc.ca	37	10	76803567	76803567	+	Missense_Mutation	SNP	T	T	G	rs16931938	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	76803567	T	G	76803567	3	3	684	1	0	0	0	0	1	0	0	0	4806	1609	56	5	261	5	DUPD1	10	76803567	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10		76803567	58731180	40	41680											
FAM35A	54537	broad.mit.edu	37	10	88911469	88911469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	88911469	A	G	88911469	3	3	684	1	0	0	0	0	1	0	0	0	5560	449	16	3	360	3	FAM35A	10	88911469	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	12107902	88911469	46623278	41	41681											
C10orf91	170393	ucsc.edu	37	10	134261475	134261475	+	Silent	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	134261475	A	G	134261475	2	3	684	1	0	0	0	0	0	0	0	1	1626	146	6	3		3	C10orf91	10	134261475	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10	45350006	134261475	1273272	42	41682											
TPH1	7166	ucsc.edu	37	11	18044471	18044471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	18044471	A	G	18044471	3	3	684	1	0	0	0	0	1	0	0	0	16413	72	3	3	308	3	TPH1	11	18044471	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		18044471	116962045	43	41683											
C1QTNF4	114900	ucsc.edu	37	11	47612134	47612134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	47612134	A	G	47612134	3	3	684	1	0	0	0	0	1	0	0	0	1967	72	3	3	764	3	C1QTNF4	11	47612134	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	29567663	47612134	87394382	44	41684											
CPSF7	79869	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	61183901	61183901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	61183901	C	T	61183901	3	4	684	1	0	0	0	0	1	0	0	0	3832	536	19	1	790	1	CPSF7	11	61183901	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	13571767	61183901	73822615	45	41685											
GDPD5	81544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	75152734	75152734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	75152734	G	A	75152734	3	1	684	1	0	0	0	0	1	0	0	0	6334	1086	38	1	555	1	GDPD5	11	75152734	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	13968833	75152734	59853782	46	41686											
CCDC82	79780	broad.mit.edu	37	11	96117896	96117896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	96117896	T	C	96117896	3	2	684	1	0	0	0	0	1	0	0	0	2858	1617	56	3	1646	3	CCDC82	11	96117896	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	20965162	96117896	38888620	47	41687											
CACNA1C	775	mdanderson.org	37	12	2794937	2794937	+	Missense_Mutation	SNP	C	C	T	rs201777030		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	2794937	C	T	2794937	3	4	684	1	0	0	0	0	1	0	0	0	2542	536	19	1	6492	1	CACNA1C	12	2794937	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10		2794937	131056958	48	41688											
ATN1	1822	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	7045495	7045495	+	Silent	SNP	A	A	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	7045495	A	C	7045495	2	2	684	1	0	0	0	0	0	0	0	1	1111	146	6	5		5	ATN1	12	7045495	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10	4250558	7045495	126806400	49	41689											
C1RL	51279	bcgsc.ca	37	12	7252316	7252316	+	Silent	SNP	T	T	C	rs146214220		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	7252316	T	C	7252316	2	2	684	1	0	0	0	0	0	0	0	1	1975	1664	58	3		3	C1RL	12	7252316	Silent	SNP	T	TCGA-KL-8346-01A-11D-2310-10	206821	7252316	126599579	50	41690											
PABPC3	5042	mdanderson.org	37	13	25670873	25670873	+	Silent	SNP	A	A	G	rs77142265		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	25670873	A	G	25670873	2	3	684	1	0	0	0	0	0	0	0	1	11372	291	11	3		3	PABPC3	13	25670873	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10		25670873	89499005	51	41691											
SERPINA10	51156	ucsc.edu;mdanderson.org;bcgsc.ca	37	14	94756470	94756470	+	Missense_Mutation	SNP	C	C	T	rs61761870	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	94756470	C	T	94756470	3	4	684	1	0	0	0	0	1	0	0	0	14100	768	27	1	889	1	SERPINA10	14	94756470	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10		94756470	12593070	52	41692											
MAPKBP1	23005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	42113229	42113229	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	42113229	A	C	42113229	3	2	684	1	0	0	0	0	1	0	0	0	9299	217	8	5	2789	5	MAPKBP1	15	42113229	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		42113229	60418163	53	41693											
USP8	9101	mdanderson.org	37	15	50784990	50784990	+	Missense_Mutation	SNP	T	T	C	rs146125856	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	50784990	T	C	50784990	3	2	684	1	0	0	0	0	1	0	0	0	17101	1609	56	3	2381	3	USP8	15	50784990	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	8671761	50784990	51746402	54	41694											
DENND4A	10260	bcgsc.ca	37	15	65982751	65982751	+	Splice_Site	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	65982751	A	G	65982751	5	3	684	1	0	0	0	0	0	0	1	0	4435	405	14	3	1586	3	DENND4A	15	65982751	Splice_Site	SNP	A	TCGA-KL-8346-01A-11D-2310-10	15197761	65982751	36548641	55	41695											
ALDOA	226	broad.mit.edu	37	16	30079974	30079974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	30079974	A	G	30079974	3	3	684	1	0	0	0	0	1	0	0	0	507	72	3	3	342	3	ALDOA	16	30079974	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		30079974	60274779	56	41696											
MYO15A	51168	broad.mit.edu	37	17	18042900	18042900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	18042900	A	G	18042900	3	3	684	1	0	0	0	0	1	0	0	0	10070	275	10	3	5252	3	MYO15A	17	18042900	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		18042900	63152310	57	41697											
ITGB4	3691	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	17	73727413	73727413	+	Silent	SNP	G	G	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	73727413	G	T	73727413	2	4	684	1	0	0	0	0	0	0	0	1	7904	1045	37	4		4	ITGB4	17	73727413	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	55684513	73727413	7467797	58	41698											
SLC38A10	124565	ucsc.edu	37	17	79219503	79219503	+	Silent	SNP	G	G	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	79219503	G	A	79219503	2	1	684	1	0	0	0	0	0	0	0	1	14615	1280	45	2		2	SLC38A10	17	79219503	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	5492090	79219503	1975707	59	41699											
VAPA	9218	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	18	9954094	9954094	+	Silent	SNP	T	T	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	9954094	T	A	9954094	2	1	684	1	0	0	0	0	0	0	0	1	17133	1567	55	5		5	VAPA	18	9954094	Silent	SNP	T	TCGA-KL-8346-01A-11D-2310-10		9954094	68123154	60	41700											
TBXA2R	6915	broad.mit.edu	37	19	3595778	3595778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	3595778	C	A	3595778	3	1	684	1	0	0	0	0	1	0	0	0	15675	768	27	4	340	4	TBXA2R	19	3595778	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10		3595778	55533205	61	41701											
CACNA1A	773	broad.mit.edu	37	19	13372388	13372388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	13372388	C	T	13372388	3	4	684	1	0	0	0	0	1	0	0	0	2540	536	19	1	3584	1	CACNA1A	19	13372388	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	9776610	13372388	45756595	62	41702											
ZNF676	163223	mdanderson.org	37	19	22363610	22363610	+	Silent	SNP	A	A	G	rs201622264	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	22363610	A	G	22363610	2	3	684	1	0	0	0	0	0	0	0	1	18095	446	16	3		3	ZNF676	19	22363610	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10	8991222	22363610	36765373	63	41703	555	2									
ZNF676	163223	mdanderson.org	37	19	22363615	22363615	+	Missense_Mutation	SNP	T	T	C	rs76328545	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	22363615	T	C	22363615	3	2	684	1	0	0	0	0	1	0	0	0	18095	1493	52	3	866	3	ZNF676	19	22363615	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	5	22363615	36765368	64	41704	555	2									
THAP8	199745	broad.mit.edu	37	19	36526406	36526406	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	36526406	T	G	36526406	3	3	684	1	0	0	0	0	1	0	0	0	15862	1667	58	5	67	5	THAP8	19	36526406	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	14162791	36526406	22602577	65	41705											
RYR1	6261	ucsc.edu;bcgsc.ca	37	19	39017691	39017691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	39017691	A	G	39017691	3	3	684	1	0	0	0	0	1	0	0	0	13781	86	3	3	10971	3	RYR1	19	39017691	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	2491285	39017691	20111292	66	41706											
HAS1	3036	ucsc.edu;bcgsc.ca	37	19	52222713	52222713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	52222713	C	T	52222713	3	4	684	1	0	0	0	0	1	0	0	0	6968	893	31	1	1304	1	HAS1	19	52222713	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	13205022	52222713	6906270	67	41707											
ZNF28	7576	mdanderson.org	37	19	53303182	53303182	+	Missense_Mutation	SNP	T	T	C	rs75548544		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	53303182	T	C	53303182	3	2	684	1	0	0	0	0	1	0	0	0	17825	1551	54	3	244	3	ZNF28	19	53303182	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	1080469	53303182	5825801	68	41708											
ZGPAT	84619	ucsc.edu	37	20	62340424	62340424	+	Silent	SNP	T	T	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	62340424	T	G	62340424	2	3	684	1	0	0	0	0	0	0	0	1	17686	1683	59	5		5	ZGPAT	20	62340424	Silent	SNP	T	TCGA-KL-8346-01A-11D-2310-10		62340424	685096	69	41709											
CARD10	29775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	22	37888769	37888769	+	Silent	SNP	C	C	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	37888769	C	T	37888769	2	4	684	1	0	0	0	0	0	0	0	1	2646	755	27	1		1	CARD10	22	37888769	Silent	SNP	C	TCGA-KL-8346-01A-11D-2310-10		37888769	13415797	70	41710											
MICALL1	85377	broad.mit.edu;hgsc.bcm.edu	37	22	38328810	38328810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	38328810	C	T	38328810	3	4	684	1	0	0	0	0	1	0	0	0	9580	652	23	1	2195	1	MICALL1	22	38328810	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	440041	38328810	12975756	71	41711											
CYP2D6	1565	mdanderson.org	37	22	42523539	42523539	+	Silent	SNP	A	A	G	rs28371726	bycluster;byfrequency;by1000genomes	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	42523539	A	G	42523539	2	3	684	1	0	0	0	0	0	0	0	1	4171	214	8	3		3	CYP2D6	22	42523539	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10	4194729	42523539	8781027	72	41712											
UBA1	7317	bcgsc.ca	37	X	47058254	47058254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	G	47058254	A	G	47058254	3	3	684	1	0	0	0	0	1	0	0	0	16839	72	3	3	55	3	UBA1	23	47058254	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		47058254	108212306	73	41713											
ABCB7	22	broad.mit.edu	37	X	74273332	74273332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	74273332	C	T	74273332	3	4	684	1	0	0	0	0	1	0	0	0	46	536	19	1	130	1	ABCB7	23	74273332	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	27215078	74273332	80997228	74	41714											
TCEAL4	79921	mdanderson.org	37	X	102842229	102842229	+	Missense_Mutation	SNP	T	T	C	rs201993261		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	C	102842229	T	C	102842229	3	2	684	1	0	0	0	0	1	0	0	0	15685	1493	52	3	628	3	TCEAL4	23	102842229	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	28568897	102842229	52428331	75	41715											
SLC25A5	292	mdanderson.org	37	X	118603756	118603756	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	A	118603756	T	A	118603756	3	1	684	1	0	0	0	0	1	0	0	0	14525	1609	56	5	250	5	SLC25A5	23	118603756	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	15761527	118603756	36666804	76	41716											
MTMR1	8776	broad.mit.edu	37	X	149901024	149901024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703	T	149901024	G	T	149901024	3	4	684	1	0	0	0	0	1	0	0	0	9945	1357	47	4	912	4	MTMR1	23	149901024	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	31297268	149901024	5369536	77	41717											
H6PD	9563	broad.mit.edu	37	1	9324408	9324408	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	9324408	T	G	9324408	3	3	685	1	0	0	0	0	1	0	0	0	6943	1725	60	5	1870	5	H6PD	1	9324408	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10		9324408	239926213	1	41718											
ZNF593	51042	mdanderson.org	37	1	26496651	26496651	+	Silent	SNP	T	T	C	rs7087	bycluster;byfrequency;by1000genomes	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	26496651	T	C	26496651	2	2	685	1	0	0	0	0	0	0	0	1	18035	1654	58	3		3	ZNF593	1	26496651	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	17172243	26496651	222753970	2	41719											
OLFM3	118427	broad.mit.edu	37	1	102269842	102269842	+	Silent	SNP	C	C	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	102269842	C	T	102269842	2	4	685	1	0	0	0	0	0	0	0	1	10861	465	17	2		2	OLFM3	1	102269842	Silent	SNP	C	TCGA-KM-8438-01A-11D-2310-10	75773191	102269842	146980779	3	41720											
LAD1	3898	mdanderson.org	37	1	201358386	201358386	+	Silent	SNP	G	G	A	rs150992211	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	201358386	G	A	201358386	2	1	685	1	0	0	0	0	0	0	0	1	8606	1074	38	1		1	LAD1	1	201358386	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	99088544	201358386	47892235	4	41721											
CR1L	1379	broad.mit.edu	37	1	207896964	207896964	+	Silent	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	207896964	T	C	207896964	2	2	685	1	0	0	0	0	0	0	0	1	3843	1739	60	3		3	CR1L	1	207896964	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	6538578	207896964	41353657	5	41722											
OR2T12	127064	mdanderson.org	37	1	248458419	248458419	+	Silent	SNP	G	G	C	rs35294053	bycluster	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	248458419	G	C	248458419	2	2	685	1	0	0	0	0	0	0	0	1	11026	1190	42	4		4	OR2T12	1	248458419	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	40561455	248458419	792202	6	41723											
OR2T2	401992	bcgsc.ca	37	1	248616706	248616712	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	TGCTGCG	TGCTGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	-	248616712	TGCTGCG	-	248616706	7	5	685	1	0	1	0	1	0	0	0	0	11027	1319	46	0	610	0	OR2T2	1	248616706	Frame_Shift_Del	DEL	TGCTGCG	TCGA-KM-8438-01A-11D-2310-10	158287	248616706	633915	7	41724											
NRXN1	9378	ucsc.edu;bcgsc.ca	37	2	51255194	51255194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	51255194	T	C	51255194	3	2	685	1	0	0	0	0	1	0	0	0	10672	1551	54	3	4780	3	NRXN1	2	51255194	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10		51255194	191944179	8	41725											
CTNNA2	1496	broad.mit.edu	37	2	80816430	80816430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	80816430	C	A	80816430	3	1	685	1	0	0	0	0	1	0	0	0	4015	753	26	4	1855	4	CTNNA2	2	80816430	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	29561236	80816430	162382943	9	41726											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179641009	179641009	+	Missense_Mutation	SNP	C	C	T	rs140914855		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	179641009	C	T	179641009	3	4	685	1	0	0	0	0	1	0	0	0	16747	768	27	1	105746	1	TTN	2	179641009	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	98824579	179641009	63558364	10	41727											
OSGEPL1	64172	ucsc.edu	37	2	190618648	190618648	+	Silent	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	190618648	T	C	190618648	2	2	685	1	0	0	0	0	0	0	0	1	11295	1567	55	3		3	OSGEPL1	2	190618648	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	10977639	190618648	52580725	11	41728											
EEF1B2	1933	broad.mit.edu	37	2	207025365	207025365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	207025365	C	T	207025365	3	4	685	1	0	0	0	0	1	0	0	0	4927	652	23	1	140	1	EEF1B2	2	207025365	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	16406717	207025365	36174008	12	41729											
ALPP	250	broad.mit.edu;mdanderson.org;bcgsc.ca	37	2	233244614	233244614	+	Missense_Mutation	SNP	G	G	A	rs138033708	alternate_allele	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	233244614	G	A	233244614	3	1	685	1	0	0	0	0	1	0	0	0	548	1087	38	1	643	1	ALPP	2	233244614	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	26219249	233244614	9954759	13	41730											
LRRN1	57633	bcgsc.ca	37	3	3887089	3887089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	3887089	C	A	3887089	3	1	685	1	0	0	0	0	1	0	0	0	9041	681	24	4	766	4	LRRN1	3	3887089	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		3887089	194135341	14	41731											
TRANK1	9881	bcgsc.ca	37	3	36898643	36898643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	36898643	T	C	36898643	3	2	685	1	0	0	0	0	1	0	0	0	16466	1609	56	3	6387	3	TRANK1	3	36898643	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	33011554	36898643	161123787	15	41732											
ITGA9	3680	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	37785427	37785427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	37785427	C	A	37785427	3	1	685	1	0	0	0	0	1	0	0	0	7890	855	30	4	2421	4	ITGA9	3	37785427	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	886784	37785427	160237003	16	41733											
CCDC13	152206	hgsc.bcm.edu	37	3	42777231	42777231	+	Silent	SNP	G	G	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	42777231	G	A	42777231	2	1	685	1	0	0	0	0	0	0	0	1	2767	962	34	2		2	CCDC13	3	42777231	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	4991804	42777231	155245199	17	41734											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	47084094	47084094	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	47084094	G	A	47084094	4	1	685	1	0	0	0	0	0	1	0	0	14144	1066	37	1	519	1	SETD2	3	47084094	Nonsense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	4306863	47084094	150938336	18	41735											
ATP11B	23200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	182631695	182631695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	182631695	G	T	182631695	3	4	685	1	0	0	0	0	1	0	0	0	1120	1377	48	4	3479	4	ATP11B	3	182631695	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	135547601	182631695	15390735	19	41736											
MUC4	4585	mdanderson.org	37	3	195512531	195512531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	195512531	C	T	195512531	3	4	685	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195512531	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	12880836	195512531	2509899	20	41737											
MUC4	4585	mdanderson.org	37	3	195515052	195515052	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	195515052	G	C	195515052	3	2	685	1	0	0	0	0	1	0	0	0	9985	1136	40	4		4	MUC4	3	195515052	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	2521	195515052	2507378	21	41738											
DGKQ	1609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	956357	956357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	956357	C	T	956357	3	4	685	1	0	0	0	0	1	0	0	0	4475	652	23	1	772	1	DGKQ	4	956357	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		956357	190197919	22	41739											
ARSK	153642	broad.mit.edu;hgsc.bcm.edu	37	5	94936601	94936601	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	-	94936601	C	-	94936601	7	5	685	1	0	1	0	1	0	0	0	0	996	739	26	0	1173	0	ARSK	5	94936601	Frame_Shift_Del	DEL	C	TCGA-KM-8438-01A-11D-2310-10		94936601	85978659	23	41740	556	2									
ARSK	153642	bcgsc.ca	37	5	94936602	94936602	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	-	94936602	C	-	94936602	7	5	685	1	0	1	0	1	0	0	0	0	996	652	23	0	1174	0	ARSK	5	94936602	Frame_Shift_Del	DEL	C	TCGA-KM-8438-01A-11D-2310-10	1	94936602	85978658	24	41741	556	2									
RNF39	80352	ucsc.edu;bcgsc.ca	37	6	30043356	30043356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	30043356	C	T	30043356	3	4	685	1	0	0	0	0	1	0	0	0	13504	710	25	2	1067	2	RNF39	6	30043356	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		30043356	141071711	25	41742											
HLA-DRB1	3123	mdanderson.org	37	6	32557477	32557477	+	Silent	SNP	G	G	A	rs150644773	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	32557477	G	A	32557477	2	1	685	1	0	0	0	0	0	0	0	1	7215	962	34	2		2	HLA-DRB1	6	32557477	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	2514121	32557477	138557590	26	41743											
COL12A1	1303	broad.mit.edu;bcgsc.ca	37	6	75875301	75875301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	75875301	T	C	75875301	3	2	685	1	0	0	0	0	1	0	0	0	3671	1667	58	3	6498	3	COL12A1	6	75875301	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	43317824	75875301	95239766	27	41744											
CRHR2	1395	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	30739613	30739613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	30739613	C	T	30739613	3	4	685	1	0	0	0	0	1	0	0	0	3874	551	19	1		1	CRHR2	7	30739613	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		30739613	128399050	28	41745											
ARPC1B	10095	bcgsc.ca	37	7	98988571	98988571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	98988571	G	T	98988571	3	4	685	1	0	0	0	0	1	0	0	0	970	1232	43	4	574	4	ARPC1B	7	98988571	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	68248958	98988571	60150092	29	41746											
CFTR	1080	broad.mit.edu	37	7	117188705	117188705	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	117188705	A	T	117188705	3	4	685	1	0	0	0	0	1	0	0	0	3296	246	9	5	1258	5	CFTR	7	117188705	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	18200134	117188705	41949958	30	41747											
LMOD2	442721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	123302156	123302156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	123302156	C	A	123302156	3	1	685	1	0	0	0	0	1	0	0	0	8864	477	17	4	522	4	LMOD2	7	123302156	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	6113451	123302156	35836507	31	41748											
GCC1	79571	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	127224826	127224826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	127224826	C	A	127224826	3	1	685	1	0	0	0	0	1	0	0	0	6292	912	32	4	1924	4	GCC1	7	127224826	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	3922670	127224826	31913837	32	41749											
SLC4A2	6522	broad.mit.edu;hgsc.bcm.edu	37	7	150772848	150772851	+	Frame_Shift_Del	DEL	ACTT	ACTT	-	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	ACTT	ACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	-	150772851	ACTT	-	150772848	7	5	685	1	0	1	0	1	0	0	0	0	14667	159	6	0	3535	0	SLC4A2	7	150772848	Frame_Shift_Del	DEL	ACTT	TCGA-KM-8438-01A-11D-2310-10	23548022	150772848	8365815	33	41750	557	2									
SLC4A2	6522	bcgsc.ca	37	7	150772849	150772852	+	Frame_Shift_Del	DEL	ACTT	ACTT	-	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	ACTT	ACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	-	150772852	ACTT	-	150772849	7	5	685	1	0	1	0	1	0	0	0	0	14667	565	20	0	3536	0	SLC4A2	7	150772849	Frame_Shift_Del	DEL	ACTT	TCGA-KM-8438-01A-11D-2310-10	1	150772849	8365814	34	41751	557	2									
MLL3	58508	mdanderson.org	37	7	151945349	151945349	+	Nonsense_Mutation	SNP	T	T	A	rs201039690		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	151945349	T	A	151945349	4	1	685	1	0	0	0	0	0	1	0	0	9629	1850	64	5	12749	5	MLL3	7	151945349	Nonsense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	1172500	151945349	7193314	35	41752											
EFHA2	286097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	16935352	16935352	+	Nonsense_Mutation	SNP	C	C	T	rs150021056	bycluster	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	16935352	C	T	16935352	4	4	685	1	0	0	0	0	0	1	0	0	4946	876	31	1	642	1	EFHA2	8	16935352	Nonsense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		16935352	129428670	36	41753											
RNF122	79845	broad.mit.edu;bcgsc.ca	37	8	33408896	33408896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	33408896	T	C	33408896	3	2	685	1	0	0	0	0	1	0	0	0	13445	1725	60	3	289	3	RNF122	8	33408896	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	16473544	33408896	112955126	37	41754											
RP1	6101	bcgsc.ca	37	8	55538990	55538990	+	Missense_Mutation	SNP	A	A	G	rs112884043		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	55538990	A	G	55538990	3	3	685	1	0	0	0	0	1	0	0	0	13545	101	4	3	2558	3	RP1	8	55538990	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	22130094	55538990	90825032	38	41755											
FAM82B	51115	broad.mit.edu;hgsc.bcm.edu	37	8	87487151	87487154	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	-	87487154	AAGT	-	87487151	7	5	685	1	0	1	0	1	0	0	0	0	5639	233	9	0	160	0	FAM82B	8	87487151	Frame_Shift_Del	DEL	AAGT	TCGA-KM-8438-01A-11D-2310-10	31948161	87487151	58876871	39	41756											
RPL30	6156	ucsc.edu	37	8	99054067	99054067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	99054067	T	C	99054067	3	2	685	1	0	0	0	0	1	0	0	0	13593	1464	51	3	41	3	RPL30	8	99054067	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	11566916	99054067	47309955	40	41757											
GAS1	2619	ucsc.edu	37	9	89561028	89561028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	89561028	C	T	89561028	3	4	685	1	0	0	0	0	1	0	0	0	6251	536	19	1	374	1	GAS1	9	89561028	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		89561028	51652403	41	41758											
NCS1	23413	ucsc.edu	37	9	132934986	132934986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	132934986	A	G	132934986	3	3	685	1	0	0	0	0	1	0	0	0	10247	304	11	3	46	3	NCS1	9	132934986	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	43373958	132934986	8278445	42	41759											
TUBB8	347688	mdanderson.org	37	10	93804	93804	+	Silent	SNP	C	C	T	rs9329304	bycluster;byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	93804	C	T	93804	2	4	685	1	0	0	0	0	0	0	0	1	16773	639	23	1		1	TUBB8	10	93804	Silent	SNP	C	TCGA-KM-8438-01A-11D-2310-10		93804	135440943	43	41760											
MUC6	4588	mdanderson.org	37	11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	1016871	G	T	1016871	3	4	685	1	0	0	0	0	1	0	0	0	9987	1232	43	4	1401	4	MUC6	11	1016871	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10		1016871	133989645	44	41761											
MUC6	4588	mdanderson.org	37	11	1017152	1017152	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	1017152	G	C	1017152	3	2	685	1	0	0	0	0	1	0	0	0	9987	1280	45	4	1682	4	MUC6	11	1017152	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	281	1017152	133989364	45	41762											
MUC5B	727897	mdanderson.org	37	11	1270383	1270383	+	Silent	SNP	G	G	A	rs61869661	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	1270383	G	A	1270383	2	1	685	1	0	0	0	0	0	0	0	1	9986	1103	39	1		1	MUC5B	11	1270383	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	253231	1270383	133736133	46	41763			1	106		2	2	19	G		5.232974e-05
MUC5B	727897	mdanderson.org	37	11	1270401	1270401	+	Silent	SNP	G	G	A	rs201512746	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	1270401	G	A	1270401	2	1	685	1	0	0	0	0	0	0	0	1	9986	1103	39	1		1	MUC5B	11	1270401	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	18	1270401	133736115	47	41764			1	106		2	2	19	G		5.232974e-05
TRPM5	29850	mdanderson.org	37	11	2435946	2435946	+	Silent	SNP	A	A	G	rs4929981	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	2435946	A	G	2435946	2	3	685	1	0	0	0	0	0	0	0	1	16601	144	5	3		3	TRPM5	11	2435946	Silent	SNP	A	TCGA-KM-8438-01A-11D-2310-10	1165545	2435946	132570570	48	41765											
SYT9	143425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	7324616	7324616	+	Silent	SNP	G	G	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	7324616	G	A	7324616	2	1	685	1	0	0	0	0	0	0	0	1	15493	1103	39	1		1	SYT9	11	7324616	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	4888670	7324616	127681900	49	41766											
CALCB	797	broad.mit.edu;mdanderson.org	37	11	15096731	15096731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	15096731	A	G	15096731	3	3	685	1	0	0	0	0	1	0	0	0	2578	275	10	3	217	3	CALCB	11	15096731	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	7772115	15096731	119909785	50	41767											
FOLH1	2346	mdanderson.org	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	rs116795343	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	49204779	C	T	49204779	3	4	685	1	0	0	0	0	1	0	0	0	5986	536	19	1	1462	1	FOLH1	11	49204779	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	34108048	49204779	85801737	51	41768			2	107	47934378	2	2	12	N	C_A	3.197961e-05
FOLH1	2346	mdanderson.org	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	49204790	A	G	49204790	2	3	685	1	0	0	0	0	0	0	0	1	5986	224	8	3		3	FOLH1	11	49204790	Silent	SNP	A	TCGA-KM-8438-01A-11D-2310-10	11	49204790	85801726	52	41769			2	107	47934378	2	2	12	N	C_A	3.197961e-05
OR4D10	390197	broad.mit.edu	37	11	59245050	59245050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	59245050	A	G	59245050	3	3	685	1	0	0	0	0	1	0	0	0	11061	391	14	3	150	3	OR4D10	11	59245050	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	10040260	59245050	75761466	53	41770											
TBC1D10C	374403	ucsc.edu	37	11	67176906	67176906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	67176906	A	G	67176906	3	3	685	1	0	0	0	0	1	0	0	0	15612	275	10	3	1056	3	TBC1D10C	11	67176906	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	7931856	67176906	67829610	54	41771											
PRB1	5542	broad.mit.edu	37	12	11506383	11506383	+	Silent	SNP	C	C	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	11506383	C	T	11506383	2	4	685	1	0	0	0	0	0	0	0	1	12452	796	28	2		2	PRB1	12	11506383	Silent	SNP	C	TCGA-KM-8438-01A-11D-2310-10		11506383	122345512	55	41772											
TESC	54997	ucsc.edu	37	12	117513078	117513078	+	Silent	SNP	A	A	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	117513078	A	G	117513078	2	3	685	1	0	0	0	0	0	0	0	1	15778	242	9	3		3	TESC	12	117513078	Silent	SNP	A	TCGA-KM-8438-01A-11D-2310-10	106006695	117513078	16338817	56	41773											
HNF1A	6927	broad.mit.edu;hgsc.bcm.edu	37	12	121431369	121431370	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	121431370	-	G	121431369	7	5	685	1	0	1	1	0	0	0	0	0	7258	1683	59	0	583	0	HNF1A	12	121431369	Frame_Shift_Ins	INS	-	TCGA-KM-8438-01A-11D-2310-10	3918291	121431369	12420526	57	41774											
C1QTNF9	338872	mdanderson.org	37	13	24895797	24895797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	24895797	G	A	24895797	3	1	685	1	0	0	0	0	1	0	0	0	1972	1232	43	2	903	2	C1QTNF9	13	24895797	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10		24895797	90274081	58	41775											
NIN	51199	mdanderson.org;bcgsc.ca	37	14	51237220	51237220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	51237220	C	A	51237220	3	1	685	1	0	0	0	0	1	0	0	0	10424	912	32	4	5309	4	NIN	14	51237220	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		51237220	56112320	59	41776											
MARK3	4140	broad.mit.edu	37	14	103941508	103941508	+	Silent	SNP	G	G	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	103941508	G	A	103941508	2	1	685	1	0	0	0	0	0	0	0	1	9321	1103	39	1		1	MARK3	14	103941508	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	52704288	103941508	3408032	60	41777											
KIF26A	26153	mdanderson.org	37	14	104643409	104643409	+	Silent	SNP	A	A	G	rs2487303	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	104643409	A	G	104643409	2	3	685	1	0	0	0	0	0	0	0	1	8301	175	7	3		3	KIF26A	14	104643409	Silent	SNP	A	TCGA-KM-8438-01A-11D-2310-10	701901	104643409	2706131	61	41778											
SQRDL	58472	broad.mit.edu;hgsc.bcm.edu	37	15	45951304	45951305	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	45951305	-	A	45951304	7	5	685	1	0	1	1	0	0	0	0	0	15141	697	25	0	185	0	SQRDL	15	45951304	Frame_Shift_Ins	INS	-	TCGA-KM-8438-01A-11D-2310-10		45951304	56580088	62	41779	558	2									
SQRDL	58472	bcgsc.ca	37	15	45951305	45951306	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	45951306	-	A	45951305	7	5	685	1	0	1	1	0	0	0	0	0	15141	217	8	0	186	0	SQRDL	15	45951305	Frame_Shift_Ins	INS	-	TCGA-KM-8438-01A-11D-2310-10	1	45951305	56580087	63	41780	558	2									
DMXL2	23312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	51768854	51768854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	51768854	C	A	51768854	3	1	685	1	0	0	0	0	1	0	0	0	4597	536	19	4	2285	4	DMXL2	15	51768854	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	5817549	51768854	50762538	64	41781											
CHRNB4	1143	broad.mit.edu;mdanderson.org	37	15	78921471	78921471	+	Silent	SNP	G	G	A	rs142694602	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	78921471	G	A	78921471	2	1	685	1	0	0	0	0	0	0	0	1	3395	1103	39	1		1	CHRNB4	15	78921471	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	27152617	78921471	23609921	65	41782											
ZP2	7783	broad.mit.edu	37	16	21218242	21218242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	21218242	A	G	21218242	3	3	685	1	0	0	0	0	1	0	0	0	18228	391	14	3	1897	3	ZP2	16	21218242	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10		21218242	69136511	66	41783											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	11833188	11833188	+	Silent	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	11833188	T	C	11833188	2	2	685	1	0	0	0	0	0	0	0	1	4610	1771	62	3		3	DNAH9	17	11833188	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10		11833188	69362022	67	41784											
CDC27	996	mdanderson.org	37	17	45219669	45219669	+	Missense_Mutation	SNP	G	G	A	rs11491191		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	45219669	G	A	45219669	3	1	685	1	0	0	0	0	1	0	0	0	3068	1174	41	2	1206	2	CDC27	17	45219669	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	33386481	45219669	35975541	68	41785											
ABCA10	10349	ucsc.edu	37	17	67190540	67190540	+	Missense_Mutation	SNP	G	G	A	rs200155538		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	67190540	G	A	67190540	3	1	685	1	0	0	0	0	1	0	0	0	29	942	33	2	3412	2	ABCA10	17	67190540	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	21970871	67190540	14004670	69	41786											
AATK	9625	broad.mit.edu	37	17	79102327	79102327	+	Silent	SNP	G	G	A	rs56384363	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	79102327	G	A	79102327	2	1	685	1	0	0	0	0	0	0	0	1	26	1136	40	1		1	AATK	17	79102327	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	11911787	79102327	2092883	70	41787											
NFATC1	4772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	77208855	77208855	+	Missense_Mutation	SNP	G	G	A	rs139150912		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	77208855	G	A	77208855	3	1	685	1	0	0	0	0	1	0	0	0	10368	1087	38	1	1566	1	NFATC1	18	77208855	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10		77208855	868393	71	41788											
SLC39A3	29985	mdanderson.org	37	19	2732986	2732986	+	Silent	SNP	T	T	C	rs759073	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	2732986	T	C	2732986	2	2	685	1	0	0	0	0	0	0	0	1	14632	1741	61	3		3	SLC39A3	19	2732986	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10		2732986	56395997	72	41789											
ZNRF4	148066	mdanderson.org	37	19	5455976	5455976	+	Silent	SNP	C	C	T	rs61740902	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	5455976	C	T	5455976	2	4	685	1	0	0	0	0	0	0	0	1	18226	874	31	1		1	ZNRF4	19	5455976	Silent	SNP	C	TCGA-KM-8438-01A-11D-2310-10	2722990	5455976	53673007	73	41790											
MUC16	94025	mdanderson.org	37	19	8999443	8999443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	8999443	T	C	8999443	3	2	685	1	0	0	0	0	1	0	0	0	9980	1464	51	3	2907	3	MUC16	19	8999443	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	3543467	8999443	50129540	74	41791											
RFX1	5989	mdanderson.org	37	19	14083761	14083761	+	Missense_Mutation	SNP	T	T	C	rs2305780	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	14083761	T	C	14083761	3	2	685	1	0	0	0	0	1	0	0	0	13275	1696	59	3	1883	3	RFX1	19	14083761	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	5084318	14083761	45045222	75	41792											
NOTCH3	4854	mdanderson.org	37	19	15285052	15285052	+	Silent	SNP	T	T	C	rs1044006	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	15285052	T	C	15285052	2	2	685	1	0	0	0	0	0	0	0	1	10557	1567	55	3		3	NOTCH3	19	15285052	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	1201291	15285052	43843931	76	41793											
OR10H2	26538	mdanderson.org	37	19	15839311	15839311	+	Missense_Mutation	SNP	C	C	T	rs139469467		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	15839311	C	T	15839311	3	4	685	1	0	0	0	0	1	0	0	0	10913	893	31	1	460	1	OR10H2	19	15839311	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	554259	15839311	43289672	77	41794											
FCGBP	8857	mdanderson.org	37	19	40368733	40368733	+	Silent	SNP	G	G	C	rs61732623	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	40368733	G	C	40368733	2	2	685	1	0	0	0	0	0	0	0	1	5785	1161	41	4		4	FCGBP	19	40368733	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	24529422	40368733	18760250	78	41795											
LMTK3	114783	ucsc.edu	37	19	48994716	48994716	+	Silent	SNP	T	T	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	48994716	T	G	48994716	2	3	685	1	0	0	0	0	0	0	0	1	8867	1683	59	5		5	LMTK3	19	48994716	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	8625983	48994716	10134267	79	41796											
LILRB5	10990	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	54756385	54756385	+	Missense_Mutation	SNP	G	G	A	rs138683047	alternate_allele	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	54756385	G	A	54756385	3	1	685	1	0	0	0	0	1	0	0	0	8801	1087	38	1	289	1	LILRB5	19	54756385	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	5761669	54756385	4372598	80	41797											
TGM6	343641	bcgsc.ca	37	20	2384095	2384095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	2384095	T	C	2384095	3	2	685	1	0	0	0	0	1	0	0	0	15846	1551	54	3	1072	3	TGM6	20	2384095	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10		2384095	60641425	81	41798											
XKR7	343702	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	30584474	30584474	+	Silent	SNP	G	G	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	30584474	G	A	30584474	2	1	685	1	0	0	0	0	0	0	0	1	17448	1074	38	1		1	XKR7	20	30584474	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	28200379	30584474	32441046	82	41799											
NNAT	4826	broad.mit.edu	37	20	36149782	36149782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	36149782	T	C	36149782	3	2	685	1	0	0	0	0	1	0	0	0	10515	1638	57	3	51	3	NNAT	20	36149782	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	5565308	36149782	26875738	83	41800											
RALGAPB	57148	broad.mit.edu	37	20	37126161	37126161	+	Splice_Site	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	37126161	T	C	37126161	5	2	685	1	0	0	0	0	0	0	1	0	13028	1739	60	3	565	3	RALGAPB	20	37126161	Splice_Site	SNP	T	TCGA-KM-8438-01A-11D-2310-10	976379	37126161	25899359	84	41801											
RBM11	54033	mdanderson.org	37	21	15599340	15599340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	15599340	A	G	15599340	3	3	685	1	0	0	0	0	1	0	0	0	13125	159	6	3	590	3	RBM11	21	15599340	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10		15599340	32530555	85	41802											
KRTAP10-2	386679	mdanderson.org	37	21	45971109	45971109	+	Missense_Mutation	SNP	G	G	A	rs77233671		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	45971109	G	A	45971109	3	1	685	1	0	0	0	0	1	0	0	0	8516	1059	37	1	538	1	KRTAP10-2	21	45971109	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	30371769	45971109	2158786	86	41803											
SUSD2	56241	mdanderson.org	37	22	24579219	24579219	+	Missense_Mutation	SNP	G	G	A	rs79349493		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	24579219	G	A	24579219	3	1	685	1	0	0	0	0	1	0	0	0	15420	1087	38	1	277	1	SUSD2	22	24579219	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10		24579219	26725347	87	41804											
PMM1	5372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	41973907	41973907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	T	41973907	C	T	41973907	3	4	685	1	0	0	0	0	1	0	0	0	12143	536	19	1	225	1	PMM1	22	41973907	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	17394688	41973907	9330659	88	41805											
TLR7	51284	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	12904430	12904430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	12904430	T	C	12904430	3	2	685	1	0	0	0	0	1	0	0	0	15968	1841	64	3	809	3	TLR7	23	12904430	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10		12904430	142366130	89	41806											
PRICKLE3	4007	broad.mit.edu	37	X	49034679	49034679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	G	49034679	A	G	49034679	3	3	685	1	0	0	0	0	1	0	0	0	12498	275	10	3	1153	3	PRICKLE3	23	49034679	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	36130249	49034679	106235881	90	41807											
WNK3	65267	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	54276507	54276507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	54276507	G	A	54276507	3	1	685	1	0	0	0	0	1	0	0	0	17391	1145	40	1	2805	1	WNK3	23	54276507	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	5241828	54276507	100994053	91	41808											
ARR3	407	broad.mit.edu	37	X	69498391	69498391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	C	69498391	T	C	69498391	3	2	685	1	0	0	0	0	1	0	0	0	979	1609	56	3	847	3	ARR3	23	69498391	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	15221884	69498391	85772169	92	41809											
SERPINA7	6906	mdanderson.org;bcgsc.ca	37	X	105278361	105278361	+	Missense_Mutation	SNP	C	C	A	rs1804495	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df	A	105278361	C	A	105278361	3	1	685	1	0	0	0	0	1	0	0	0	14107	477	17	4	346	4	SERPINA7	23	105278361	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	35779970	105278361	49992199	93	41810											
COL16A1	1307	broad.mit.edu;hgsc.bcm.edu	37	1	32149324	32149324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	32149324	C	T	32149324	3	4	686	1	0	0	0	0	1	0	0	0	3675	855	30	2	2603	2	COL16A1	1	32149324	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10		32149324	217101297	1	41811											
RSBN1	54665	mdanderson.org	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	C	114354654	T	C	114354654	2	2	686	1	0	0	0	0	0	0	0	1	13709	1799	63	3		3	RSBN1	1	114354654	Silent	SNP	T	TCGA-KM-8439-01A-11D-2310-10	82205330	114354654	134895967	2	41812											
NBPF10	100132406	broad.mit.edu	37	1	145299779	145299779	+	Silent	SNP	C	C	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	145299779	C	T	145299779	2	4	686	1	0	0	0	0	0	0	0	1	10200	639	23	1		1	NBPF10	1	145299779	Silent	SNP	C	TCGA-KM-8439-01A-11D-2310-10	30945125	145299779	103950842	3	41813											
FLG	2312	mdanderson.org	37	1	152284576	152284576	+	Missense_Mutation	SNP	C	C	A	rs71585892	alternate_allele	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	152284576	C	A	152284576	3	1	686	1	0	0	0	0	1	0	0	0	5929	739	26	4	9403	4	FLG	1	152284576	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	6984797	152284576	96966045	4	41814											
KISS1	3814	mdanderson.org	37	1	204159787	204159787	+	Missense_Mutation	SNP	G	G	C	rs4889	bycluster;byfrequency;by1000genomes	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	C	204159787	G	C	204159787	3	2	686	1	0	0	0	0	1	0	0	0	8334	1232	43	4	178	4	KISS1	1	204159787	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	51875211	204159787	45090834	5	41815											
FMN2	56776	mdanderson.org	37	1	240370995	240370995	+	Silent	SNP	G	G	A	rs201866430	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	240370995	G	A	240370995	2	1	686	1	0	0	0	0	0	0	0	1	5957	1219	43	2		2	FMN2	1	240370995	Silent	SNP	G	TCGA-KM-8439-01A-11D-2310-10	36211208	240370995	8879626	6	41816											
FMN2	56776	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	240371393	240371393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	240371393	C	T	240371393	3	4	686	1	0	0	0	0	1	0	0	0	5957	768	27	1	3299	1	FMN2	1	240371393	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	398	240371393	8879228	7	41817											
EPT1	85465	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	26608003	26608003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	26608003	G	A	26608003	3	1	686	1	0	0	0	0	1	0	0	0	5201	1029	36	2	938	2	EPT1	2	26608003	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		26608003	216591370	8	41818											
DUSP11	8446	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	74007178	74007178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	74007178	G	A	74007178	3	1	686	1	0	0	0	0	1	0	0	0	4813	942	33	2	1104	2	DUSP11	2	74007178	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	47399175	74007178	169192195	9	41819											
KCMF1	56888	broad.mit.edu;hgsc.bcm.edu	37	2	85262268	85262268	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	-	85262268	C	-	85262268	7	5	686	1	0	1	0	1	0	0	0	0	8007	838	29	0	324	0	KCMF1	2	85262268	Frame_Shift_Del	DEL	C	TCGA-KM-8439-01A-11D-2310-10	11255090	85262268	157937105	10	41820	559	2									
KCMF1	56888	bcgsc.ca	37	2	85262269	85262269	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	-	85262269	C	-	85262269	7	5	686	1	0	1	0	1	0	0	0	0	8007	117	5	0	325	0	KCMF1	2	85262269	Frame_Shift_Del	DEL	C	TCGA-KM-8439-01A-11D-2310-10	1	85262269	157937104	11	41821	559	2									
POTEE	445582	mdanderson.org	37	2	132021475	132021475	+	Missense_Mutation	SNP	G	G	A	rs11546936		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	132021475	G	A	132021475	3	1	686	1	0	0	0	0	1	0	0	0	12271	1087	38	1	2505	1	POTEE	2	132021475	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	46759206	132021475	111177898	12	41822											
MUC4	4585	mdanderson.org	37	3	195511403	195511403	+	Missense_Mutation	SNP	C	C	T	rs78846267		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	195511403	C	T	195511403	3	4	686	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195511403	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10		195511403	2511027	13	41823	560	2									
MUC4	4585	mdanderson.org	37	3	195511412	195511412	+	Missense_Mutation	SNP	T	T	A	rs199878638		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	195511412	T	A	195511412	3	1	686	1	0	0	0	0	1	0	0	0	9985	1696	59	5		5	MUC4	3	195511412	Missense_Mutation	SNP	T	TCGA-KM-8439-01A-11D-2310-10	9	195511412	2511018	14	41824	560	2									
MUC4	4585	mdanderson.org	37	3	195515126	195515126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	195515126	C	T	195515126	3	4	686	1	0	0	0	0	1	0	0	0	9985	884	31	1		1	MUC4	3	195515126	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	3714	195515126	2507304	15	41825											
LRBA	987	broad.mit.edu	37	4	151842427	151842427	+	Silent	SNP	A	A	G	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	G	151842427	A	G	151842427	2	3	686	1	0	0	0	0	0	0	0	1	8938	40	2	3		3	LRBA	4	151842427	Silent	SNP	A	TCGA-KM-8439-01A-11D-2310-10		151842427	39311849	16	41826											
DND1	373863	mdanderson.org	37	5	140052407	140052407	+	Missense_Mutation	SNP	G	G	A	rs75523379		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	140052407	G	A	140052407	3	1	686	1	0	0	0	0	1	0	0	0	4668	1116	39	1	842	1	DND1	5	140052407	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		140052407	40862853	17	41827											
PCDHA5	56143	hgsc.bcm.edu	37	5	140201458	140201458	+	Missense_Mutation	SNP	C	C	T	rs144627570		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	140201458	C	T	140201458	3	4	686	1	0	0	0	0	1	0	0	0	11534	893	31	1	100	1	PCDHA5	5	140201458	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	149051	140201458	40713802	18	41828											
FAM8A1	51439	mdanderson.org	37	6	17602863	17602863	+	Missense_Mutation	SNP	C	C	T	rs80120441	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	17602863	C	T	17602863	3	4	686	1	0	0	0	0	1	0	0	0	5656	710	25	2	761	2	FAM8A1	6	17602863	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10		17602863	153512204	19	41829			1	108		3	3	48	N	G_C_A	2.38677e-09
FAM8A1	51439	mdanderson.org	37	6	17602895	17602895	+	Missense_Mutation	SNP	A	A	G	rs79412549	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	G	17602895	A	G	17602895	3	3	686	1	0	0	0	0	1	0	0	0	5656	449	16	3	793	3	FAM8A1	6	17602895	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10	32	17602895	153512172	20	41830			1	108		3	3	48	N	G_C_A	2.38677e-09
FAM8A1	51439	mdanderson.org	37	6	17602910	17602910	+	Missense_Mutation	SNP	G	G	A	rs144013791	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	17602910	G	A	17602910	3	1	686	1	0	0	0	0	1	0	0	0	5656	1377	48	2	808	2	FAM8A1	6	17602910	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	15	17602910	153512157	21	41831			1	108		3	3	48	N	G_C_A	2.38677e-09
MUC21	394263	mdanderson.org	37	6	30955201	30955201	+	Missense_Mutation	SNP	G	G	A	rs2508018		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	30955201	G	A	30955201	3	1	686	1	0	0	0	0	1	0	0	0	9984	1203	42	2	1255	2	MUC21	6	30955201	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	13352291	30955201	140159866	22	41832											
FAM26F	441168	mdanderson.org	37	6	116783330	116783330	+	Missense_Mutation	SNP	G	G	A	rs3087828		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	116783330	G	A	116783330	3	1	686	1	0	0	0	0	1	0	0	0	5558	1117	39	1	240	1	FAM26F	6	116783330	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	85828129	116783330	54331737	23	41833											
EYA4	2070	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	133789819	133789819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	133789819	C	A	133789819	3	1	686	1	0	0	0	0	1	0	0	0	5333	507	18	4	958	4	EYA4	6	133789819	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	17006489	133789819	37325248	24	41834											
CYP2W1	54905	mdanderson.org	37	7	1023013	1023013	+	Silent	SNP	C	C	T	rs2272375	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	1023013	C	T	1023013	2	4	686	1	0	0	0	0	0	0	0	1	4178	680	24	2		2	CYP2W1	7	1023013	Silent	SNP	C	TCGA-KM-8439-01A-11D-2310-10		1023013	158115650	25	41835											
TNRC18	84629	ucsc.edu	37	7	5401630	5401630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	C	5401630	T	C	5401630	3	2	686	1	0	0	0	0	1	0	0	0	16351	1667	58	3	4548	3	TNRC18	7	5401630	Missense_Mutation	SNP	T	TCGA-KM-8439-01A-11D-2310-10	4378617	5401630	153737033	26	41836											
WIPF3	644150	broad.mit.edu	37	7	29924113	29924114	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	C	29924114	-	C	29924113	7	5	686	1	0	1	1	0	0	0	0	0	17381	1203	42	0	1017	0	WIPF3	7	29924113	Frame_Shift_Ins	INS	-	TCGA-KM-8439-01A-11D-2310-10	24522483	29924113	129214550	27	41837											
CALU	813	broad.mit.edu	37	7	128407599	128407599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	128407599	C	T	128407599	3	4	686	1	0	0	0	0	1	0	0	0	2596	652	23	1	949	1	CALU	7	128407599	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	98483486	128407599	30731064	28	41838											
IRF5	3663	ucsc.edu	37	7	128586594	128586594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	G	128586594	A	G	128586594	3	3	686	1	0	0	0	0	1	0	0	0	7840	304	11	3	435	3	IRF5	7	128586594	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10	178995	128586594	30552069	29	41839											
CNTLN	54875	broad.mit.edu	37	9	17409364	17409364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	G	17409364	A	G	17409364	3	3	686	1	0	0	0	0	1	0	0	0	3641	391	14	3	2781	3	CNTLN	9	17409364	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10		17409364	123804067	30	41840											
HSPA14	51182	broad.mit.edu	37	10	14890641	14890641	+	Silent	SNP	G	G	A	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	14890641	G	A	14890641	2	1	686	1	0	0	0	0	0	0	0	1	7414	1103	39	1		1	HSPA14	10	14890641	Silent	SNP	G	TCGA-KM-8439-01A-11D-2310-10		14890641	120644106	31	41841											
ECHS1	1892	hgsc.bcm.edu	37	10	135186806	135186806	+	Missense_Mutation	SNP	A	A	G	rs1130833		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	G	135186806	A	G	135186806	3	3	686	1	0	0	0	0	1	0	0	0	4898	275	10	3	872	3	ECHS1	10	135186806	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10	120296165	135186806	347941	32	41842											
TUB	7275	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	8120345	8120345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	8120345	G	A	8120345	3	1	686	1	0	0	0	0	1	0	0	0	16754	1349	47	2	1284	2	TUB	11	8120345	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		8120345	126886171	33	41843											
OR5M10	390167	broad.mit.edu	37	11	56344713	56344713	+	Missense_Mutation	SNP	A	A	T	rs140389540		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	56344713	A	T	56344713	3	4	686	1	0	0	0	0	1	0	0	0	11180	188	7	5	466	5	OR5M10	11	56344713	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10	48224368	56344713	78661803	34	41844											
MS4A14	84689	broad.mit.edu	37	11	60165391	60165391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	60165391	G	A	60165391	3	1	686	1	0	0	0	0	1	0	0	0	9865	1116	39	1	211	1	MS4A14	11	60165391	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	3820678	60165391	74841125	35	41845											
PLCB3	5331	mdanderson.org	37	11	64026685	64026685	+	Silent	SNP	C	C	T	rs28395882	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	64026685	C	T	64026685	2	4	686	1	0	0	0	0	0	0	0	1	12036	639	23	1		1	PLCB3	11	64026685	Silent	SNP	C	TCGA-KM-8439-01A-11D-2310-10	3861294	64026685	70979831	36	41846											
GOLGA3	2802	broad.mit.edu	37	12	133357472	133357472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	C	133357472	T	C	133357472	3	2	686	1	0	0	0	0	1	0	0	0	6561	1551	54	3	1030	3	GOLGA3	12	133357472	Missense_Mutation	SNP	T	TCGA-KM-8439-01A-11D-2310-10		133357472	494423	37	41847											
TPP2	7174	broad.mit.edu	37	13	103328696	103328696	+	Silent	SNP	A	A	G	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	G	103328696	A	G	103328696	2	3	686	1	0	0	0	0	0	0	0	1	16424	301	11	3		3	TPP2	13	103328696	Silent	SNP	A	TCGA-KM-8439-01A-11D-2310-10		103328696	11841182	38	41848											
ZNF629	23361	broad.mit.edu;mdanderson.org;bcgsc.ca	37	16	30794552	30794552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	30794552	C	T	30794552	3	4	686	1	0	0	0	0	1	0	0	0	18065	652	23	1	1516	1	ZNF629	16	30794552	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10		30794552	59560201	39	41849											
CHST6	4166	broad.mit.edu	37	16	75512651	75512651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	75512651	C	T	75512651	3	4	686	1	0	0	0	0	1	0	0	0	3410	652	23	1	115	1	CHST6	16	75512651	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	44718099	75512651	14842102	40	41850											
GUCY2D	3000	mdanderson.org	37	17	7906519	7906519	+	Missense_Mutation	SNP	G	G	T	rs61749665	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	7906519	G	T	7906519	3	4	686	1	0	0	0	0	1	0	0	0	6904	1087	38	4	156	4	GUCY2D	17	7906519	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		7906519	73288691	41	41851											
WNT3	7473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	44847153	44847153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	44847153	C	T	44847153	3	4	686	1	0	0	0	0	1	0	0	0	17400	768	27	1	491	1	WNT3	17	44847153	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	36940634	44847153	36348057	42	41852											
LAMA3	3909	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	18	21404467	21404467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	21404467	G	T	21404467	3	4	686	1	0	0	0	0	1	0	0	0	8614	942	33	4	2591	4	LAMA3	18	21404467	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		21404467	56672781	43	41853											
TSHZ1	10194	broad.mit.edu	37	18	72997839	72997839	+	Silent	SNP	A	A	C	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	C	72997839	A	C	72997839	2	2	686	1	0	0	0	0	0	0	0	1	16635	146	6	5		5	TSHZ1	18	72997839	Silent	SNP	A	TCGA-KM-8439-01A-11D-2310-10	51593372	72997839	5079409	44	41854											
UPF1	5976	ucsc.edu	37	19	18976950	18976950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	G	18976950	T	G	18976950	3	3	686	1	0	0	0	0	1	0	0	0	17015	1696	59	5	3425	5	UPF1	19	18976950	Missense_Mutation	SNP	T	TCGA-KM-8439-01A-11D-2310-10		18976950	40152033	45	41855											
SOX12	6666	mdanderson.org	37	20	307249	307249	+	Silent	SNP	G	G	A	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	307249	G	A	307249	2	1	686	1	0	0	0	0	0	0	0	1	14956	1103	39	1		1	SOX12	20	307249	Silent	SNP	G	TCGA-KM-8439-01A-11D-2310-10		307249	62718271	46	41856											
GDF5	8200	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	34021967	34021967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	T	34021967	C	T	34021967	3	4	686	1	0	0	0	0	1	0	0	0	6323	884	31	1	263	1	GDF5	20	34021967	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	33714718	34021967	29003553	47	41857											
PKDREJ	10343	mdanderson.org;bcgsc.ca	37	22	46656278	46656278	+	Missense_Mutation	SNP	G	G	A	rs117787407		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5	A	46656278	G	A	46656278	3	1	686	1	0	0	0	0	1	0	0	0	11977	1145	40	1	3823	1	PKDREJ	22	46656278	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		46656278	4648288	48	41858											
CR1	1378	mdanderson.org	37	1	207787831	207787831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	207787831	G	T	207787831	4	4	687	1	0	0	0	0	0	1	0	0	3842	1291	45	4	6816	4	CR1	1	207787831	Nonsense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10		207787831	41462790	1	41859											
EXOC8	149371	ucsc.edu;bcgsc.ca	37	1	231473244	231473244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	C	231473244	T	C	231473244	3	2	687	1	0	0	0	0	1	0	0	0	5313	1551	54	3	1933	3	EXOC8	1	231473244	Missense_Mutation	SNP	T	TCGA-KM-8440-01A-11D-2310-10	23685413	231473244	17777377	2	41860											
BIRC6	57448	broad.mit.edu;mdanderson.org	37	2	32694461	32694461	+	Splice_Site	SNP	A	A	G	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	32694461	A	G	32694461	5	3	687	1	0	0	0	0	0	0	1	0	1438	434	15	3	6244	3	BIRC6	2	32694461	Splice_Site	SNP	A	TCGA-KM-8440-01A-11D-2310-10		32694461	210504912	3	41861											
CTNNA2	1496	broad.mit.edu;mdanderson.org	37	2	80816475	80816475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	80816475	A	T	80816475	3	4	687	1	0	0	0	0	1	0	0	0	4015	304	11	5	1900	5	CTNNA2	2	80816475	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	48122014	80816475	162382898	4	41862											
RNF181	51255	ucsc.edu	37	2	85823695	85823695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	85823695	A	G	85823695	3	3	687	1	0	0	0	0	1	0	0	0	13478	275	10	3	146	3	RNF181	2	85823695	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	5007220	85823695	157375678	5	41863											
RBMS3	27303	broad.mit.edu;bcgsc.ca	37	3	29628650	29628650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	29628650	C	T	29628650	3	4	687	1	0	0	0	0	1	0	0	0	13163	768	27	1	367	1	RBMS3	3	29628650	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		29628650	168393780	6	41864											
RAD54L2	23132	broad.mit.edu	37	3	51690165	51690165	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	51690165	C	T	51690165	4	4	687	1	0	0	0	0	0	1	0	0	13007	711	25	2	3275	2	RAD54L2	3	51690165	Nonsense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	22061515	51690165	146332265	7	41865											
MUC4	4585	mdanderson.org	37	3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T	rs11915935		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	195505787	C	T	195505787	3	4	687	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195505787	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	143815622	195505787	2516643	8	41866			1	109		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	3	195505886	195505886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	195505886	C	G	195505886	3	3	687	1	0	0	0	0	1	0	0	0	9985	826	29	4		4	MUC4	3	195505886	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	99	195505886	2516544	9	41867			1	109		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	3	195509832	195509832	+	Silent	SNP	C	C	T	rs199909366		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	195509832	C	T	195509832	2	4	687	1	0	0	0	0	0	0	0	1	9985	465	17	2		2	MUC4	3	195509832	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10	3946	195509832	2512598	10	41868			1	109		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	3	195509843	195509843	+	Missense_Mutation	SNP	C	C	T	rs200739317		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	195509843	C	T	195509843	3	4	687	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195509843	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	11	195509843	2512587	11	41869			1	109		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	3	195512483	195512483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	195512483	C	T	195512483	3	4	687	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195512483	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	2640	195512483	2509947	12	41870			1	109		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	3	195513780	195513780	+	Silent	SNP	G	G	A	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	195513780	G	A	195513780	2	1	687	1	0	0	0	0	0	0	0	1	9985	1136	40	1		1	MUC4	3	195513780	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10	1297	195513780	2508650	13	41871			1	109		6	6	7994	N	G_C	1.01151e-11
DGKQ	1609	broad.mit.edu	37	4	961063	961063	+	Silent	SNP	G	G	A	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	961063	G	A	961063	2	1	687	1	0	0	0	0	0	0	0	1	4475	1136	40	1		1	DGKQ	4	961063	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10		961063	190193213	14	41872											
KLB	152831	mdanderson.org	37	4	39448542	39448542	+	Silent	SNP	C	C	G	rs7685429	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	39448542	C	G	39448542	2	3	687	1	0	0	0	0	0	0	0	1	8339	668	24	4		4	KLB	4	39448542	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10	38487479	39448542	151705734	15	41873											
NUDT9	53343	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	4	88379168	88379168	+	Silent	SNP	T	T	C	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	C	88379168	T	C	88379168	2	2	687	1	0	0	0	0	0	0	0	1	10753	1722	60	3		3	NUDT9	4	88379168	Silent	SNP	T	TCGA-KM-8440-01A-11D-2310-10	48930626	88379168	102775108	16	41874											
H2AFZ	3015	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	4	100870503	100870503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	100870503	G	T	100870503	3	4	687	1	0	0	0	0	1	0	0	0	6938	1145	40	4	276	4	H2AFZ	4	100870503	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	12491335	100870503	90283773	17	41875											
FRG1	2483	mdanderson.org	37	4	190874235	190874235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	190874235	C	T	190874235	3	4	687	1	0	0	0	0	1	0	0	0	6053	681	24	2	286	2	FRG1	4	190874235	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	90003732	190874235	280041	18	41876											
TCERG1	10915	hgsc.bcm.edu	37	5	145838641	145838641	+	Silent	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	145838641	C	T	145838641	2	4	687	1	0	0	0	0	0	0	0	1	15697	610	22	2		2	TCERG1	5	145838641	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10		145838641	35076619	19	41877											
MUC21	394263	mdanderson.org	37	6	30955119	30955119	+	Silent	SNP	A	A	T	rs55918804	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	30955119	A	T	30955119	2	4	687	1	0	0	0	0	0	0	0	1	9984	175	7	5		5	MUC21	6	30955119	Silent	SNP	A	TCGA-KM-8440-01A-11D-2310-10		30955119	140159948	20	41878											
KCNK16	83795	ucsc.edu;bcgsc.ca	37	6	39290273	39290273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	39290273	A	G	39290273	3	3	687	1	0	0	0	0	1	0	0	0	8070	188	7	3	1294	3	KCNK16	6	39290273	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	8335154	39290273	131824794	21	41879											
POM121C	100101267	broad.mit.edu	37	7	75055685	75055686	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	CC	75055686	-	CC	75055685	7	5	687	1	0	1	1	0	0	0	0	0	12247	1451	51	0	2464	0	POM121C	7	75055685	Frame_Shift_Ins	INS	-	TCGA-KM-8440-01A-11D-2310-10		75055685	84082978	22	41880											
TRIM4	89122	broad.mit.edu	37	7	99514382	99514382	+	Silent	SNP	G	G	A	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	99514382	G	A	99514382	2	1	687	1	0	0	0	0	0	0	0	1	16526	1136	40	1		1	TRIM4	7	99514382	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10	24458697	99514382	59624281	23	41881											
KLF14	136259	mdanderson.org	37	7	130418525	130418525	+	Silent	SNP	G	G	A	rs76603546	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	130418525	G	A	130418525	2	1	687	1	0	0	0	0	0	0	0	1	8349	1103	39	1		1	KLF14	7	130418525	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10	30904143	130418525	28720138	24	41882											
PRSS1	5644	mdanderson.org	37	7	142460779	142460779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	142460779	G	T	142460779	3	4	687	1	0	0	0	0	1	0	0	0	12624	1290	45	4	670	4	PRSS1	7	142460779	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	12042254	142460779	16677884	25	41883											
MLL3	58508	mdanderson.org	37	7	151962290	151962290	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	151962290	C	G	151962290	3	3	687	1	0	0	0	0	1	0	0	0	9629	680	24	4	13926	4	MLL3	7	151962290	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	9501511	151962290	7176373	26	41884											
EEF1D	1936	mdanderson.org	37	8	144671244	144671244	+	Silent	SNP	C	C	A	rs4874160	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	144671244	C	A	144671244	2	1	687	1	0	0	0	0	0	0	0	1	4928	610	22	4		4	EEF1D	8	144671244	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10		144671244	1692778	27	41885											
ZNF658	26149	mdanderson.org	37	9	40775035	40775035	+	Silent	SNP	C	C	T	rs62561230		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	40775035	C	T	40775035	2	4	687	1	0	0	0	0	0	0	0	1	18081	521	18	2		2	ZNF658	9	40775035	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10		40775035	100438396	28	41886											
TTC16	158248	mdanderson.org	37	9	130487157	130487157	+	Missense_Mutation	SNP	T	T	G	rs77630455	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	130487157	T	G	130487157	3	3	687	1	0	0	0	0	1	0	0	0	16695	1609	56	5	1274	5	TTC16	9	130487157	Missense_Mutation	SNP	T	TCGA-KM-8440-01A-11D-2310-10	89712122	130487157	10726274	29	41887											
TUBB8	347688	mdanderson.org	37	10	94006	94006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	94006	C	T	94006	3	4	687	1	0	0	0	0	1	0	0	0	16773	739	26	2	1012	2	TUBB8	10	94006	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		94006	135440741	30	41888											
CELF2	10659	hgsc.bcm.edu	37	10	11207550	11207550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	11207550	C	T	11207550	3	4	687	1	0	0	0	0	1	0	0	0	3218	893	31	1	239	1	CELF2	10	11207550	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	11113544	11207550	124327197	31	41889											
PDCD11	22984	ucsc.edu	37	10	105160258	105160258	+	Silent	SNP	A	A	G	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	105160258	A	G	105160258	2	3	687	1	0	0	0	0	0	0	0	1	11624	301	11	3		3	PDCD11	10	105160258	Silent	SNP	A	TCGA-KM-8440-01A-11D-2310-10	93952708	105160258	30374489	32	41890											
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643255	1643255	+	Silent	SNP	G	G	A	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	1643255	G	A	1643255	2	1	687	1	0	0	0	0	0	0	0	1	8570	958	34	2		2	KRTAP5-4	11	1643255	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10		1643255	133363261	33	41891											
VWCE	220001	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	61026257	61026257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	61026257	C	T	61026257	3	4	687	1	0	0	0	0	1	0	0	0	17257	536	19	1	113	1	VWCE	11	61026257	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	59383002	61026257	73980259	34	41892											
AHNAK	79026	broad.mit.edu	37	11	62294617	62294617	+	Silent	SNP	C	C	T	rs143003772		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	62294617	C	T	62294617	2	4	687	1	0	0	0	0	0	0	0	1	414	726	26	2		2	AHNAK	11	62294617	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10	1268360	62294617	72711899	35	41893											
MAML2	84441	hgsc.bcm.edu	37	11	95825362	95825362	+	Silent	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	95825362	C	T	95825362	2	4	687	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825362	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10	33530745	95825362	39181154	36	41894											
MLL2	8085	ucsc.edu;mdanderson.org;bcgsc.ca	37	12	49436390	49436390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	C	49436390	T	C	49436390	3	2	687	1	0	0	0	0	1	0	0	0	9628	1493	52	3	10904	3	MLL2	12	49436390	Missense_Mutation	SNP	T	TCGA-KM-8440-01A-11D-2310-10		49436390	84415505	37	41895											
RBM19	9904	hgsc.bcm.edu;ucsc.edu	37	12	114261040	114261040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	114261040	G	T	114261040	3	4	687	1	0	0	0	0	1	0	0	0	13134	1000	35	4	14	4	RBM19	12	114261040	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	64824650	114261040	19590855	38	41896											
FOXO1	2308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	41134356	41134356	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	41134356	A	T	41134356	4	4	687	1	0	0	0	0	0	1	0	0	6030	456	16	5	699	5	FOXO1	13	41134356	Nonsense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10		41134356	74035522	39	41897											
DZIP1	22873	bcgsc.ca	37	13	96293631	96293631	+	Missense_Mutation	SNP	G	G	A	rs9561921	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	96293631	G	A	96293631	3	1	687	1	0	0	0	0	1	0	0	0	4865	1145	40	1	2164	1	DZIP1	13	96293631	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	55159275	96293631	18876247	40	41898											
DDX24	57062	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	14	94524209	94524209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	94524209	C	A	94524209	3	1	687	1	0	0	0	0	1	0	0	0	4353	623	22	4	647	4	DDX24	14	94524209	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		94524209	12825331	41	41899											
SLC24A1	9187	broad.mit.edu	37	15	65916547	65916547	+	Silent	SNP	A	A	G	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	65916547	A	G	65916547	2	3	687	1	0	0	0	0	0	0	0	1	14478	272	10	3		3	SLC24A1	15	65916547	Silent	SNP	A	TCGA-KM-8440-01A-11D-2310-10		65916547	36614845	42	41900											
CSK	1445	broad.mit.edu	37	15	75093415	75093415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	C	75093415	T	C	75093415	3	2	687	1	0	0	0	0	1	0	0	0	3945	1551	54	3	815	3	CSK	15	75093415	Missense_Mutation	SNP	T	TCGA-KM-8440-01A-11D-2310-10	9176868	75093415	27437977	43	41901											
KIAA0430	9665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	15695994	15695994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	15695994	C	A	15695994	3	1	687	1	0	0	0	0	1	0	0	0	8184	478	17	4	768	4	KIAA0430	16	15695994	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		15695994	74658759	44	41902											
COQ7	10229	mdanderson.org;bcgsc.ca	37	16	19085298	19085298	+	Missense_Mutation	SNP	C	C	T	rs11074359	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	19085298	C	T	19085298	3	4	687	1	0	0	0	0	1	0	0	0	3752	536	19	1	318	1	COQ7	16	19085298	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	3389304	19085298	71269455	45	41903											
PKD1L2	114780	hgsc.bcm.edu;bcgsc.ca	37	16	81213360	81213360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	81213360	C	T	81213360	3	4	687	1	0	0	0	0	1	0	0	0	11972	913	32	2	5422	2	PKD1L2	16	81213360	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	62128062	81213360	9141393	46	41904											
GLP2R	9340	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	9763353	9763353	+	Missense_Mutation	SNP	C	C	T	rs145296340	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	9763353	C	T	9763353	3	4	687	1	0	0	0	0	1	0	0	0	6460	536	19	1	886	1	GLP2R	17	9763353	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		9763353	71431857	47	41905											
HEXIM1	10614	ucsc.edu	37	17	43226939	43226939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	43226939	A	G	43226939	3	3	687	1	0	0	0	0	1	0	0	0	7083	188	7	3	384	3	HEXIM1	17	43226939	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	33463586	43226939	37968271	48	41906											
TSEN54	283989	mdanderson.org	37	17	73518328	73518328	+	Missense_Mutation	SNP	A	A	C	rs77247739		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	C	73518328	A	C	73518328	3	2	687	1	0	0	0	0	1	0	0	0	16626	188	7	5	1196	5	TSEN54	17	73518328	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	30291389	73518328	7676882	49	41907											
DNAH17	8632	bcgsc.ca	37	17	76455172	76455172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	76455172	C	T	76455172	3	4	687	1	0	0	0	0	1	0	0	0	4603	536	19	1	3700	1	DNAH17	17	76455172	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	2936844	76455172	4740038	50	41908											
PIK3C3	5289	mdanderson.org;bcgsc.ca	37	18	39607490	39607490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	39607490	G	T	39607490	3	4	687	1	0	0	0	0	1	0	0	0	11919	942	33	4	1622	4	PIK3C3	18	39607490	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10		39607490	38469758	51	41909											
SIRT6	51548	mdanderson.org	37	19	4174859	4174859	+	Missense_Mutation	SNP	C	C	T	rs74317014	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	4174859	C	T	4174859	3	4	687	1	0	0	0	0	1	0	0	0	14355	768	27	1	248	1	SIRT6	19	4174859	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		4174859	54954124	52	41910											
CACNA1A	773	mdanderson.org	37	19	13319693	13319693	+	Silent	SNP	A	A	G	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	13319693	A	G	13319693	2	3	687	1	0	0	0	0	0	0	0	1	2540	330	12	3		3	CACNA1A	19	13319693	Silent	SNP	A	TCGA-KM-8440-01A-11D-2310-10	9144834	13319693	45809290	53	41911											
CLEC17A	388512	broad.mit.edu	37	19	14710546	14710548	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	-	14710548	CTA	-	14710546	7	5	687	1	0	1	0	1	0	0	0	0	3503	796	28	0	651	0	CLEC17A	19	14710546	In_Frame_Del	DEL	CTA	TCGA-KM-8440-01A-11D-2310-10	1390853	14710546	44418437	54	41912											
MRPS12	6183	bcgsc.ca	37	19	39423174	39423175	+	Frame_Shift_Ins	INS	-	-	GGCTCAGCACTGGCCGCGA	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	GGCTCAGCACTGGCCGCGA	39423175	-	GGCTCAGCACTGGCCGCGA	39423174	7	5	687	1	0	1	1	0	0	0	0	0	9830	1116	39	0	257	0	MRPS12	19	39423174	Frame_Shift_Ins	INS	-	TCGA-KM-8440-01A-11D-2310-10	24712628	39423174	19705809	55	41913											
LIPE	3991	mdanderson.org	37	19	42905986	42905986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	42905986	C	A	42905986	3	1	687	1	0	0	0	0	1	0	0	0	8828	623	22	4	25	4	LIPE	19	42905986	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	3482812	42905986	16222997	56	41914											
KPTN	11133	broad.mit.edu	37	19	47987306	47987307	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	C	47987307	-	C	47987306	7	5	687	1	0	1	1	0	0	0	0	0	8444	1087	38	0	1246	0	KPTN	19	47987306	Frame_Shift_Ins	INS	-	TCGA-KM-8440-01A-11D-2310-10	5081320	47987306	11141677	57	41915											
DEFB132	400830	ucsc.edu	37	20	238441	238441	+	Silent	SNP	T	T	C	rs74636637		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	C	238441	T	C	238441	2	2	687	1	0	0	0	0	0	0	0	1	4419	1606	56	3		3	DEFB132	20	238441	Silent	SNP	T	TCGA-KM-8440-01A-11D-2310-10		238441	62787079	58	41916											
SIRPB1	10326	mdanderson.org	37	20	1592120	1592120	+	Missense_Mutation	SNP	G	G	T	rs1135201		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	1592120	G	T	1592120	3	4	687	1	0	0	0	0	1	0	0	0	14346	1116	39	4	2033	4	SIRPB1	20	1592120	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	1353679	1592120	61433400	59	41917											
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	21	42080523	42080523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	42080523	C	T	42080523	3	4	687	1	0	0	0	0	1	0	0	0	4770	768	27	1	5948	1	DSCAM	21	42080523	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		42080523	6049372	60	41918											
KRTAP10-10	353333	mdanderson.org	37	21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	rs1785472	by2hit2allele	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	A	46058034	G	A	46058034	3	1	687	1	0	0	0	0	1	0	0	0	8513	1145	40	1	702	1	KRTAP10-10	21	46058034	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	3977511	46058034	2071861	61	41919											
CLTCL1	8218	broad.mit.edu;bcgsc.ca	37	22	19203748	19203748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	G	19203748	A	G	19203748	3	3	687	1	0	0	0	0	1	0	0	0	3569	275	10	3	2040	3	CLTCL1	22	19203748	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10		19203748	32100818	62	41920											
SCARF2	91179	broad.mit.edu	37	22	20791941	20791943	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	-	20791943	AGC	-	20791941	7	5	687	1	0	1	0	1	0	0	0	0	13897	304	11	0	2555	0	SCARF2	22	20791941	In_Frame_Del	DEL	AGC	TCGA-KM-8440-01A-11D-2310-10	1588193	20791941	30512625	63	41921											
PKDREJ	10343	broad.mit.edu	37	22	46653502	46653502	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186	T	46653502	C	T	46653502	4	4	687	1	0	0	0	0	0	1	0	0	11977	740	26	2	1047	2	PKDREJ	22	46653502	Nonsense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	25861561	46653502	4651064	64	41922											
MEGF6	1953	mdanderson.org	37	1	3413868	3413868	+	Missense_Mutation	SNP	C	C	G	rs4648506	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	G	3413868	C	G	3413868	3	3	688	1	0	0	0	0	1	0	0	0	9469	739	26	4	1259	4	MEGF6	1	3413868	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		3413868	245836753	1	41923											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	11187847	11187847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	G	11187847	A	G	11187847	3	3	688	1	0	0	0	0	1	0	0	0	9961	333	12	3	1659	3	MTOR	1	11187847	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10	7773979	11187847	238062774	2	41924											
FOXJ3	22887	hgsc.bcm.edu	37	1	42693588	42693588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	42693588	G	A	42693588	3	1	688	1	0	0	0	0	1	0	0	0	6020	1029	36	2	1410	2	FOXJ3	1	42693588	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	31505741	42693588	206557033	3	41925											
STIL	6491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	47717422	47717422	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	47717422	G	A	47717422	4	1	688	1	0	0	0	0	0	1	0	0	15294	1066	37	1	617	1	STIL	1	47717422	Nonsense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	5023834	47717422	201533199	4	41926											
FAM69A	388650	broad.mit.edu	37	1	93341936	93341936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	93341936	C	A	93341936	3	1	688	1	0	0	0	0	1	0	0	0	5609	507	18	4	1196	4	FAM69A	1	93341936	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	45624514	93341936	155908685	5	41927											
ABCD3	5825	ucsc.edu	37	1	94884103	94884103	+	Silent	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	94884103	C	T	94884103	2	4	688	1	0	0	0	0	0	0	0	1	62	900	32	2		2	ABCD3	1	94884103	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10	1542167	94884103	154366518	6	41928											
EPHX1	2052	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	226027678	226027678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	226027678	T	C	226027678	3	2	688	1	0	0	0	0	1	0	0	0	5181	1522	53	3	889	3	EPHX1	1	226027678	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	131143575	226027678	23222943	7	41929											
VPS54	51542	mdanderson.org	37	2	64124722	64124722	+	Missense_Mutation	SNP	C	C	A	rs11558741	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	64124722	C	A	64124722	3	1	688	1	0	0	0	0	1	0	0	0	17228	478	17	4	205	4	VPS54	2	64124722	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		64124722	179074651	8	41930											
NCK2	8440	ucsc.edu	37	2	106509538	106509538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	G	106509538	A	G	106509538	3	3	688	1	0	0	0	0	1	0	0	0	10227	159	6	3	1059	3	NCK2	2	106509538	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10	42384816	106509538	136689835	9	41931											
TANC1	85461	ucsc.edu	37	2	160031482	160031482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	160031482	T	C	160031482	3	2	688	1	0	0	0	0	1	0	0	0	15556	1580	55	3	1560	3	TANC1	2	160031482	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	53521944	160031482	83167891	10	41932											
FASTKD1	79675	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	2	170428445	170428445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	170428445	C	T	170428445	3	4	688	1	0	0	0	0	1	0	0	0	5692	884	31	1	2504	1	FASTKD1	2	170428445	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	10396963	170428445	72770928	11	41933											
MTMR14	64419	bcgsc.ca	37	3	9712769	9712769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	9712769	T	C	9712769	3	2	688	1	0	0	0	0	1	0	0	0	9949	1522	53	3	614	3	MTMR14	3	9712769	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		9712769	188309661	12	41934											
DNAH1	25981	broad.mit.edu	37	3	52416340	52416340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	52416340	G	A	52416340	3	1	688	1	0	0	0	0	1	0	0	0	4599	1059	37	1	8004	1	DNAH1	3	52416340	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	42703571	52416340	145606090	13	41935											
HRG	3273	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	186395001	186395001	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	186395001	G	T	186395001	4	4	688	1	0	0	0	0	0	1	0	0	7361	1291	45	4	933	4	HRG	3	186395001	Nonsense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	133978661	186395001	11627429	14	41936											
PDE6B	5158	ucsc.edu	37	4	656004	656004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	656004	G	T	656004	3	4	688	1	0	0	0	0	1	0	0	0	11653	1203	42	4	1746	4	PDE6B	4	656004	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10		656004	190498272	15	41937											
RASL11B	65997	hgsc.bcm.edu	37	4	53728693	53728694	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	-	53728694	AT	-	53728693	7	5	688	1	0	1	0	1	0	0	0	0	13095	217	8	0	21	0	RASL11B	4	53728693	Frame_Shift_Del	DEL	AT	TCGA-KM-8441-01A-11D-2310-10	53072689	53728693	137425583	16	41938											
UGT2B7	7364	broad.mit.edu	37	4	69962648	69962648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	69962648	T	C	69962648	3	2	688	1	0	0	0	0	1	0	0	0	16974	1464	51	3	412	3	UGT2B7	4	69962648	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	16233955	69962648	121191628	17	41939											
PLK4	10733	broad.mit.edu;bcgsc.ca	37	4	128814529	128814529	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	128814529	A	C	128814529	3	2	688	1	0	0	0	0	1	0	0	0	12105	420	15	5	2320	5	PLK4	4	128814529	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10	58851881	128814529	62339747	18	41940											
ENPP6	133121	bcgsc.ca	37	4	185138788	185138788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	185138788	T	A	185138788	3	1	688	1	0	0	0	0	1	0	0	0	5136	1638	57	5	1169	5	ENPP6	4	185138788	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	56324259	185138788	6015488	19	41941											
ISOC1	51015	ucsc.edu;mdanderson.org	37	5	128430757	128430757	+	Silent	SNP	T	T	C	rs1127827	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	128430757	T	C	128430757	2	2	688	1	0	0	0	0	0	0	0	1	7869	1722	60	3		3	ISOC1	5	128430757	Silent	SNP	T	TCGA-KM-8441-01A-11D-2310-10		128430757	52484503	20	41942											
MRPS10	55173	broad.mit.edu	37	6	42179589	42179589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	42179589	T	C	42179589	3	2	688	1	0	0	0	0	1	0	0	0	9828	1763	61	3	368	3	MRPS10	6	42179589	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		42179589	128935478	21	41943											
PRDM13	59336	bcgsc.ca	37	6	100057081	100057081	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	100057081	C	T	100057081	4	4	688	1	0	0	0	0	0	1	0	0	12464	760	27	1	305	1	PRDM13	6	100057081	Nonsense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	57877492	100057081	71057986	22	41944											
MEST	4232	broad.mit.edu;mdanderson.org;bcgsc.ca	37	7	130140638	130140638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	130140638	C	T	130140638	3	4	688	1	0	0	0	0	1	0	0	0	9491	594	21	2	690	2	MEST	7	130140638	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		130140638	28998025	23	41945											
FAM160B2	64760	broad.mit.edu;hgsc.bcm.edu	37	8	21956855	21956855	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	-	21956855	C	-	21956855	7	5	688	1	0	1	0	1	0	0	0	0	5475	739	26	0	968	0	FAM160B2	8	21956855	Frame_Shift_Del	DEL	C	TCGA-KM-8441-01A-11D-2310-10		21956855	124407167	24	41946	561	2									
FAM160B2	64760	bcgsc.ca	37	8	21956856	21956856	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	-	21956856	C	-	21956856	7	5	688	1	0	1	0	1	0	0	0	0	5475	623	22	0	969	0	FAM160B2	8	21956856	Frame_Shift_Del	DEL	C	TCGA-KM-8441-01A-11D-2310-10	1	21956856	124407166	25	41947	561	2									
MCM4	4173	broad.mit.edu	37	8	48882495	48882495	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	48882495	C	T	48882495	4	4	688	1	0	0	0	0	0	1	0	0	9396	479	17	2	1350	2	MCM4	8	48882495	Nonsense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	26925639	48882495	97481527	26	41948											
PCMTD1	115294	mdanderson.org	37	8	52733016	52733016	+	Silent	SNP	T	T	C	rs117828481		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	52733016	T	C	52733016	2	2	688	1	0	0	0	0	0	0	0	1	11593	1799	63	3		3	PCMTD1	8	52733016	Silent	SNP	T	TCGA-KM-8441-01A-11D-2310-10	3850521	52733016	93631006	27	41949											
C9orf43	257169	hgsc.bcm.edu;bcgsc.ca	37	9	116183413	116183413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	116183413	C	T	116183413	3	4	688	1	0	0	0	0	1	0	0	0	2485	565	20	2	390	2	C9orf43	9	116183413	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		116183413	25030018	28	41950											
PAPPA	5069	broad.mit.edu	37	9	118950340	118950340	+	Silent	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	118950340	C	T	118950340	2	4	688	1	0	0	0	0	0	0	0	1	11439	726	26	2		2	PAPPA	9	118950340	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10	2766927	118950340	22263091	29	41951											
BAG3	9531	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	10	121431909	121431909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	121431909	C	T	121431909	3	4	688	1	0	0	0	0	1	0	0	0	1288	507	18	2	660	2	BAG3	10	121431909	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		121431909	14102838	30	41952											
PAMR1	25891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	35492290	35492290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	35492290	C	T	35492290	3	4	688	1	0	0	0	0	1	0	0	0	11420	884	31	1	1674	1	PAMR1	11	35492290	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		35492290	99514226	31	41953											
CNTN5	53942	ucsc.edu	37	11	100141946	100141946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	100141946	T	C	100141946	3	2	688	1	0	0	0	0	1	0	0	0	3646	1435	50	3	2349	3	CNTN5	11	100141946	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	64649656	100141946	34864570	32	41954											
ACAT1	38	mdanderson.org	37	11	107992346	107992346	+	Missense_Mutation	SNP	G	G	C	rs3741056	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	107992346	G	C	107992346	3	2	688	1	0	0	0	0	1	0	0	0	121	1203	42	4	15	4	ACAT1	11	107992346	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	7850400	107992346	27014170	33	41955											
FOXM1	2305	ucsc.edu	37	12	2968317	2968317	+	Silent	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	2968317	T	C	2968317	2	2	688	1	0	0	0	0	0	0	0	1	6025	1606	56	3		3	FOXM1	12	2968317	Silent	SNP	T	TCGA-KM-8441-01A-11D-2310-10		2968317	130883578	34	41956											
OR4K5	79317	broad.mit.edu	37	14	20389392	20389392	+	Silent	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	20389392	C	T	20389392	2	4	688	1	0	0	0	0	0	0	0	1	11080	709	25	2		2	OR4K5	14	20389392	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10		20389392	86960148	35	41957											
FLRT2	23768	broad.mit.edu	37	14	86088695	86088695	+	Silent	SNP	A	A	G	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	G	86088695	A	G	86088695	2	3	688	1	0	0	0	0	0	0	0	1	5946	40	2	3		3	FLRT2	14	86088695	Silent	SNP	A	TCGA-KM-8441-01A-11D-2310-10	65699303	86088695	21260845	36	41958											
SLC25A29	123096	mdanderson.org	37	14	100759046	100759046	+	Silent	SNP	C	C	A	rs3825555	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	100759046	C	A	100759046	2	1	688	1	0	0	0	0	0	0	0	1	14505	755	27	4		4	SLC25A29	14	100759046	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10	14670351	100759046	6590494	37	41959											
PLD4	122618	broad.mit.edu	37	14	105393529	105393529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	G	105393529	A	G	105393529	3	3	688	1	0	0	0	0	1	0	0	0	12055	217	8	3	54	3	PLD4	14	105393529	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10	4634483	105393529	1956011	38	41960											
SECISBP2L	9728	hgsc.bcm.edu;bcgsc.ca	37	15	49304956	49304956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	49304956	T	A	49304956	3	1	688	1	0	0	0	0	1	0	0	0	14020	1838	64	5	1713	5	SECISBP2L	15	49304956	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		49304956	53226436	39	41961											
FOXB1	27023	ucsc.edu;bcgsc.ca	37	15	60297497	60297497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	60297497	T	C	60297497	3	2	688	1	0	0	0	0	1	0	0	0	5999	1609	56	3	337	3	FOXB1	15	60297497	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	10992541	60297497	42233895	40	41962											
SCAPER	49855	broad.mit.edu;bcgsc.ca	37	15	77046256	77046256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	77046256	G	T	77046256	3	4	688	1	0	0	0	0	1	0	0	0	13891	962	34	4	2515	4	SCAPER	15	77046256	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	16748759	77046256	25485136	41	41963	562	2									
SCAPER	49855	bcgsc.ca	37	15	77046257	77046257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	77046257	C	A	77046257	3	1	688	1	0	0	0	0	1	0	0	0	13891	709	25	4	2516	4	SCAPER	15	77046257	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	1	77046257	25485135	42	41964	562	2									
TSC2	7249	bcgsc.ca	37	16	2131706	2131706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	2131706	T	C	2131706	3	2	688	1	0	0	0	0	1	0	0	0	16618	1609	56	3	3839	3	TSC2	16	2131706	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		2131706	88223047	43	41965											
ZNF668	79759	broad.mit.edu	37	16	31072731	31072731	+	Silent	SNP	A	A	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	31072731	A	C	31072731	2	2	688	1	0	0	0	0	0	0	0	1	18087	146	6	5		5	ZNF668	16	31072731	Silent	SNP	A	TCGA-KM-8441-01A-11D-2310-10	28941025	31072731	59282022	44	41966											
ITGAX	3687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	31393193	31393193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	31393193	G	A	31393193	3	1	688	1	0	0	0	0	1	0	0	0	7896	1116	39	1	3575	1	ITGAX	16	31393193	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	320462	31393193	58961560	45	41967											
SETD6	79918	broad.mit.edu;mdanderson.org;bcgsc.ca	37	16	58550764	58550764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	58550764	G	A	58550764	3	1	688	1	0	0	0	0	1	0	0	0	14148	1145	40	1	742	1	SETD6	16	58550764	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	27157571	58550764	31803989	46	41968											
HYDIN	54768	mdanderson.org	37	16	71025245	71025245	+	Silent	SNP	C	C	T	rs1774516	bycluster;byfrequency;by2hit2allele	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	71025245	C	T	71025245	2	4	688	1	0	0	0	0	0	0	0	1	7474	871	31	1		1	HYDIN	16	71025245	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10	12474481	71025245	19329508	47	41969											
GALNS	2588	broad.mit.edu;hgsc.bcm.edu	37	16	88908341	88908346	+	In_Frame_Del	DEL	TGCGGA	TGCGGA	-	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	TGCGGA	TGCGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	-	88908346	TGCGGA	-	88908341	7	5	688	1	0	1	0	1	0	0	0	0	6213	1812	63	0	1333	0	GALNS	16	88908341	In_Frame_Del	DEL	TGCGGA	TCGA-KM-8441-01A-11D-2310-10	17883096	88908341	1446412	48	41970	563	2	1	110		3	2	15	N	TGCGGA_C	2.62298e-05
GALNS	2588	bcgsc.ca	37	16	88908342	88908347	+	In_Frame_Del	DEL	TGCGGA	TGCGGA	-	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	TGCGGA	TGCGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	-	88908347	TGCGGA	-	88908342	7	5	688	1	0	1	0	1	0	0	0	0	6213	1306	46	0	1334	0	GALNS	16	88908342	In_Frame_Del	DEL	TGCGGA	TCGA-KM-8441-01A-11D-2310-10	1	88908342	1446411	49	41971	563	2	1	110		3	2	15	N	TGCGGA_C	2.62298e-05
GALNS	2588	bcgsc.ca	37	16	88908355	88908355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	88908355	C	T	88908355	3	4	688	1	0	0	0	0	1	0	0	0	6213	652	23	1	1347	1	GALNS	16	88908355	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	13	88908355	1446398	50	41972			1	110		3	2	15	N	TGCGGA_C	2.62298e-05
CCDC144NL	339184	mdanderson.org	37	17	20768730	20768730	+	Missense_Mutation	SNP	A	A	G	rs4605228	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	G	20768730	A	G	20768730	3	3	688	1	0	0	0	0	1	0	0	0	2781	404	14	3	5	3	CCDC144NL	17	20768730	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10		20768730	60426480	51	41973											
SPATA20	64847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	48629513	48629513	+	Silent	SNP	G	G	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	48629513	G	T	48629513	2	4	688	1	0	0	0	0	0	0	0	1	15018	1219	43	4		4	SPATA20	17	48629513	Silent	SNP	G	TCGA-KM-8441-01A-11D-2310-10	27860783	48629513	32565697	52	41974											
DCC	1630	broad.mit.edu	37	18	50734080	50734080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	50734080	T	C	50734080	3	2	688	1	0	0	0	0	1	0	0	0	4284	1580	55	3	1796	3	DCC	18	50734080	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		50734080	27343168	53	41975											
HNRNPM	4670	ucsc.edu	37	19	8550892	8550892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	C	8550892	T	C	8550892	3	2	688	1	0	0	0	0	1	0	0	0	7278	1580	55	3	1634	3	HNRNPM	19	8550892	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		8550892	50578091	54	41976											
MUC16	94025	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	9002616	9002616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	9002616	G	T	9002616	3	4	688	1	0	0	0	0	1	0	0	0	9980	1252	44	4	3459	4	MUC16	19	9002616	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	451724	9002616	50126367	55	41977											
MUC16	94025	broad.mit.edu	37	19	9066166	9066167	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	G	9066167	-	G	9066166	7	5	688	1	0	1	1	0	0	0	0	0	9980	1580	55	0	22571	0	MUC16	19	9066166	Frame_Shift_Ins	INS	-	TCGA-KM-8441-01A-11D-2310-10	63550	9066166	50062817	56	41978											
ZNF440	126070	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	19	11942848	11942848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	11942848	G	A	11942848	3	1	688	1	0	0	0	0	1	0	0	0	17925	1377	48	2	871	2	ZNF440	19	11942848	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	2876682	11942848	47186135	57	41979											
SIGLEC12	89858	hgsc.bcm.edu	37	19	52004795	52004796	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	T	52004796	-	T	52004795	7	5	688	1	0	1	1	0	0	0	0	0	14321	1115	39	0	1699	0	SIGLEC12	19	52004795	Frame_Shift_Ins	INS	-	TCGA-KM-8441-01A-11D-2310-10	40061947	52004795	7124188	58	41980											
TGM6	343641	ucsc.edu	37	20	2381066	2381066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	G	2381066	A	G	2381066	3	3	688	1	0	0	0	0	1	0	0	0	15846	304	11	3	991	3	TGM6	20	2381066	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10		2381066	60644454	59	41981											
SFI1	9814	ucsc.edu	37	22	32009705	32009705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	G	32009705	A	G	32009705	3	3	688	1	0	0	0	0	1	0	0	0	14169	275	10	3	2962	3	SFI1	22	32009705	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10		32009705	19294861	60	41982											
TKTL1	8277	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	153556232	153556232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8	A	153556232	G	A	153556232	3	1	688	1	0	0	0	0	1	0	0	0	15947	1377	48	2	1592	2	TKTL1	23	153556232	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10		153556232	1714328	61	41983											
MORN1	79906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	2268198	2268198	+	Silent	SNP	C	C	T	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	2268198	C	T	2268198	2	4	689	1	0	0	0	0	0	0	0	1	9715	755	27	1		1	MORN1	1	2268198	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10		2268198	246982423	1	41984											
FAM131C	348487	mdanderson.org	37	1	16388642	16388642	+	Missense_Mutation	SNP	G	G	A	rs79991837	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	16388642	G	A	16388642	3	1	689	1	0	0	0	0	1	0	0	0	5445	1116	39	1	638	1	FAM131C	1	16388642	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	14120444	16388642	232861979	2	41985											
CYP4Z1	199974	mdanderson.org	37	1	47548113	47548113	+	Missense_Mutation	SNP	G	G	A	rs200076743		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	47548113	G	A	47548113	3	1	689	1	0	0	0	0	1	0	0	0	4196	1291	45	2	486	2	CYP4Z1	1	47548113	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	31159471	47548113	201702508	3	41986											
FLG	2312	mdanderson.org	37	1	152278689	152278689	+	Silent	SNP	C	C	A	rs57672167	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	152278689	C	A	152278689	2	1	689	1	0	0	0	0	0	0	0	1	5929	813	29	4		4	FLG	1	152278689	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10	104730576	152278689	96971932	4	41987											
FLG	2312	mdanderson.org	37	1	152278814	152278814	+	Missense_Mutation	SNP	C	C	T	rs2184952	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	152278814	C	T	152278814	3	4	689	1	0	0	0	0	1	0	0	0	5929	652	23	1	3641	1	FLG	1	152278814	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	125	152278814	96971807	5	41988											
SNAPIN	23557	broad.mit.edu;hgsc.bcm.edu	37	1	153631301	153631301	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	-	153631301	G	-	153631301	7	5	689	1	0	1	0	1	0	0	0	0	14852	1000	35	0	84	0	SNAPIN	1	153631301	Frame_Shift_Del	DEL	G	TCGA-KM-8442-01A-11D-2310-10	1352487	153631301	95619320	6	41989	564	2									
SNAPIN	23557	bcgsc.ca	37	1	153631302	153631302	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	-	153631302	G	-	153631302	7	5	689	1	0	1	0	1	0	0	0	0	14852	1232	43	0	85	0	SNAPIN	1	153631302	Frame_Shift_Del	DEL	G	TCGA-KM-8442-01A-11D-2310-10	1	153631302	95619319	7	41990	564	2									
CD5L	922	broad.mit.edu;mdanderson.org	37	1	157805633	157805633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	157805633	G	A	157805633	3	1	689	1	0	0	0	0	1	0	0	0	3029	1059	37	1	691	1	CD5L	1	157805633	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	4174331	157805633	91444988	8	41991											
PPP1R15B	84919	broad.mit.edu	37	1	204379294	204379294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	204379294	A	G	204379294	3	3	689	1	0	0	0	0	1	0	0	0	12374	246	9	3	903	3	PPP1R15B	1	204379294	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	46573661	204379294	44871327	9	41992											
ELMOD3	84173	ucsc.edu	37	2	85604502	85604502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	85604502	T	C	85604502	3	2	689	1	0	0	0	0	1	0	0	0	5072	1609	56	3	673	3	ELMOD3	2	85604502	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10		85604502	157594871	10	41993											
KDM3A	55818	ucsc.edu;mdanderson.org	37	2	86693720	86693720	+	Silent	SNP	T	T	G	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	86693720	T	G	86693720	2	3	689	1	0	0	0	0	0	0	0	1	8133	1567	55	5		5	KDM3A	2	86693720	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10	1089218	86693720	156505653	11	41994											
RGPD2	729857	mdanderson.org	37	2	88125234	88125234	+	Silent	SNP	T	T	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	88125234	T	C	88125234	2	2	689	1	0	0	0	0	0	0	0	1	13299	1606	56	3		3	RGPD2	2	88125234	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10	1431514	88125234	155074139	12	41995											
SNRNP200	23020	broad.mit.edu;bcgsc.ca	37	2	96953605	96953605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	96953605	G	A	96953605	3	1	689	1	0	0	0	0	1	0	0	0	14865	1145	40	1	3133	1	SNRNP200	2	96953605	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	8828371	96953605	146245768	13	41996											
POTEE	445582	mdanderson.org	37	2	132021629	132021629	+	Missense_Mutation	SNP	G	G	T	rs76942994	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	132021629	G	T	132021629	3	4	689	1	0	0	0	0	1	0	0	0	12271	991	35	4	2659	4	POTEE	2	132021629	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	35068024	132021629	111177744	14	41997											
SPEG	10290	mdanderson.org	37	2	220350135	220350135	+	Silent	SNP	G	G	T	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	220350135	G	T	220350135	2	4	689	1	0	0	0	0	0	0	0	1	15048	1074	38	4		4	SPEG	2	220350135	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10	88328506	220350135	22849238	15	41998											
PRR21	643905	mdanderson.org	37	2	240982080	240982080	+	Missense_Mutation	SNP	C	C	G	rs143810849	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	240982080	C	G	240982080	3	3	689	1	0	0	0	0	1	0	0	0	12602	536	19	4	852	4	PRR21	2	240982080	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	20631945	240982080	2217293	16	41999											
ANO10	55129	broad.mit.edu	37	3	43607195	43607195	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	-	43607195	A	-	43607195	7	5	689	1	0	1	0	1	0	0	0	0	696	304	11	0	763	0	ANO10	3	43607195	Frame_Shift_Del	DEL	A	TCGA-KM-8442-01A-11D-2310-10		43607195	154415235	17	42000											
FLNB	2317	broad.mit.edu	37	3	58067357	58067357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	58067357	T	C	58067357	3	2	689	1	0	0	0	0	1	0	0	0	5941	1681	58	3	655	3	FLNB	3	58067357	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	14460162	58067357	139955073	18	42001											
MUC4	4585	mdanderson.org	37	3	195512505	195512505	+	Silent	SNP	G	G	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	195512505	G	A	195512505	2	1	689	1	0	0	0	0	0	0	0	1	9985	1335	47	2		2	MUC4	3	195512505	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10	137445148	195512505	2509925	19	42002											
MUC4	4585	mdanderson.org	37	3	195515141	195515141	+	Missense_Mutation	SNP	A	A	G	rs71321850		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	195515141	A	G	195515141	3	3	689	1	0	0	0	0	1	0	0	0	9985	304	11	3		3	MUC4	3	195515141	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	2636	195515141	2507289	20	42003											
CRIPAK	285464	mdanderson.org	37	4	1389161	1389161	+	Missense_Mutation	SNP	A	A	G	rs71614973	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	1389161	A	G	1389161	3	3	689	1	0	0	0	0	1	0	0	0	3879	304	11	3	864	3	CRIPAK	4	1389161	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10		1389161	189765115	21	42004											
C4orf6	10141	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	5527059	5527059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	5527059	T	C	5527059	3	2	689	1	0	0	0	0	1	0	0	0	2280	1464	51	3	4	3	C4orf6	4	5527059	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	4137898	5527059	185627217	22	42005											
CYP4V2	285440	mdanderson.org	37	4	187113041	187113041	+	Missense_Mutation	SNP	C	C	G	rs1055138	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	187113041	C	G	187113041	3	3	689	1	0	0	0	0	1	0	0	0	4194	681	24	4	66	4	CYP4V2	4	187113041	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	181585982	187113041	4041235	23	42006											
PRDM9	56979	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	23521146	23521146	+	Silent	SNP	G	G	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	23521146	G	A	23521146	2	1	689	1	0	0	0	0	0	0	0	1	12473	1132	40	1		1	PRDM9	5	23521146	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		23521146	157394114	24	42007											
ELOVL7	79993	ucsc.edu	37	5	60067915	60067915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	60067915	T	C	60067915	3	2	689	1	0	0	0	0	1	0	0	0	5081	1617	56	3	799	3	ELOVL7	5	60067915	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	36546769	60067915	120847345	25	42008											
NEDD9	4739	broad.mit.edu;mdanderson.org	37	6	11185614	11185614	+	Silent	SNP	C	C	T	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	11185614	C	T	11185614	2	4	689	1	0	0	0	0	0	0	0	1	10320	755	27	1		1	NEDD9	6	11185614	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10		11185614	159929453	26	42009											
HLA-DQA2	3118	mdanderson.org	37	6	32709265	32709266	+	Missense_Mutation	DNP	TG	TG	CA	rs201984640		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	CA	32709266	TG	CA	32709265	3	2	689	1	0	0	0	0	1	0	0	0	7212	1567	55	3	47	3	HLA-DQA2	6	32709265	Missense_Mutation	DNP	TG	TCGA-KM-8442-01A-11D-2310-10	21523651	32709265	138405802	27	42010											
TTBK1	84630	mdanderson.org	37	6	43252029	43252029	+	Missense_Mutation	SNP	T	T	C	rs3800298	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	43252029	T	C	43252029	3	2	689	1	0	0	0	0	1	0	0	0	16688	1821	63	3	3601	3	TTBK1	6	43252029	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	10542764	43252029	127863038	28	42011											
ARMC2	84071	ucsc.edu;bcgsc.ca	37	6	109232139	109232139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	109232139	A	G	109232139	3	3	689	1	0	0	0	0	1	0	0	0	951	14	1	3	1091	3	ARMC2	6	109232139	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	65980110	109232139	61882928	29	42012											
FRK	2444	hgsc.bcm.edu	37	6	116265504	116265504	+	Missense_Mutation	SNP	C	C	T	rs190064484	by1000genomes	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	116265504	C	T	116265504	3	4	689	1	0	0	0	0	1	0	0	0	6055	652	23	1	486	1	FRK	6	116265504	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	7033365	116265504	54849563	30	42013											
PHF10	55274	mdanderson.org	37	6	170115851	170115851	+	Missense_Mutation	SNP	G	G	A	rs77919800		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	170115851	G	A	170115851	3	1	689	1	0	0	0	0	1	0	0	0	11828	1115	39	1	878	1	PHF10	6	170115851	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	53850347	170115851	999216	31	42014	565	4									
PHF10	55274	mdanderson.org	37	6	170115857	170115857	+	Missense_Mutation	SNP	A	A	C	rs144595699		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	170115857	A	C	170115857	3	2	689	1	0	0	0	0	1	0	0	0	11828	69	3	5	884	5	PHF10	6	170115857	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	6	170115857	999210	32	42015	565	4									
PHF10	55274	mdanderson.org	37	6	170115864	170115864	+	Silent	SNP	A	A	G	rs147886321	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	170115864	A	G	170115864	2	3	689	1	0	0	0	0	0	0	0	1	11828	446	16	3		3	PHF10	6	170115864	Silent	SNP	A	TCGA-KM-8442-01A-11D-2310-10	7	170115864	999203	33	42016	565	4									
PHF10	55274	mdanderson.org	37	6	170115873	170115873	+	Silent	SNP	T	T	A	rs139968746	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	170115873	T	A	170115873	2	1	689	1	0	0	0	0	0	0	0	1	11828	1567	55	5		5	PHF10	6	170115873	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10	9	170115873	999194	34	42017	565	4									
USP42	84132	mdanderson.org	37	7	6194266	6194266	+	Silent	SNP	G	G	C	rs7784072		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	6194266	G	C	6194266	2	2	689	1	0	0	0	0	0	0	0	1	17085	1219	43	4		4	USP42	7	6194266	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		6194266	152944397	35	42018	566	2									
USP42	84132	mdanderson.org	37	7	6194274	6194274	+	Missense_Mutation	SNP	T	T	C	rs6463529	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	6194274	T	C	6194274	3	2	689	1	0	0	0	0	1	0	0	0	17085	1580	55	3		3	USP42	7	6194274	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	8	6194274	152944389	36	42019	566	2									
CREB5	9586	broad.mit.edu	37	7	28848967	28848967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	28848967	A	G	28848967	3	3	689	1	0	0	0	0	1	0	0	0	3862	72	3	3	1275	3	CREB5	7	28848967	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	22654693	28848967	130289696	37	42020											
AVL9	23080	bcgsc.ca	37	7	32591845	32591845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	32591845	T	C	32591845	3	2	689	1	0	0	0	0	1	0	0	0	1228	1609	56	3	489	3	AVL9	7	32591845	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	3742878	32591845	126546818	38	42021											
ZAN	7455	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	100346036	100346036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	100346036	G	A	100346036	3	1	689	1	0	0	0	0	1	0	0	0	17525	1117	39	1	1230	1	ZAN	7	100346036	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	67754191	100346036	58792627	39	42022											
KCNH2	3757	broad.mit.edu	37	7	150642468	150642469	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	150642469	-	G	150642468	7	5	689	1	0	1	1	0	0	0	0	0	8039	639	23	0	18	0	KCNH2	7	150642468	Frame_Shift_Ins	INS	-	TCGA-KM-8442-01A-11D-2310-10	50296432	150642468	8496195	40	42023											
MLL3	58508	broad.mit.edu;bcgsc.ca	37	7	151917680	151917680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	151917680	C	T	151917680	3	4	689	1	0	0	0	0	1	0	0	0	9629	536	19	1	11243	1	MLL3	7	151917680	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	1275212	151917680	7220983	41	42024											
TMEM70	54968	mdanderson.org	37	8	74888616	74888616	+	Missense_Mutation	SNP	G	G	C	rs8075	bycluster;byfrequency;by1000genomes	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	74888616	G	C	74888616	3	2	689	1	0	0	0	0	1	0	0	0	16211	1203	42	4	102	4	TMEM70	8	74888616	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10		74888616	71475406	42	42025											
ADAMTSL1	92949	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	18777867	18777867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	18777867	T	A	18777867	3	1	689	1	0	0	0	0	1	0	0	0	274	1580	55	5	3718	5	ADAMTSL1	9	18777867	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10		18777867	122435564	43	42026											
AQP7	364	mdanderson.org;bcgsc.ca	37	9	33385808	33385808	+	Missense_Mutation	SNP	G	G	T	rs62542744	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	33385808	G	T	33385808	3	4	689	1	0	0	0	0	1	0	0	0	831	1368	48	4	454	4	AQP7	9	33385808	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	14607941	33385808	107827623	44	42027											
PRSS3	5646	mdanderson.org	37	9	33796801	33796801	+	Splice_Site	SNP	G	G	A	rs143707562		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	33796801	G	A	33796801	5	1	689	1	0	0	0	0	0	0	1	0	12632	1159	40	1	422	1	PRSS3	9	33796801	Splice_Site	SNP	G	TCGA-KM-8442-01A-11D-2310-10	410993	33796801	107416630	45	42028											
KIAA1217	56243	ucsc.edu	37	10	24790406	24790406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	24790406	A	G	24790406	3	3	689	1	0	0	0	0	1	0	0	0	8223	304	11	3	1967	3	KIAA1217	10	24790406	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10		24790406	110744341	46	42029											
ZRANB1	54764	bcgsc.ca	37	10	126631811	126631811	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	-	126631811	A	-	126631811	7	5	689	1	0	1	0	1	0	0	0	0	18234	14	1	0	751	0	ZRANB1	10	126631811	Frame_Shift_Del	DEL	A	TCGA-KM-8442-01A-11D-2310-10	101841405	126631811	8902936	47	42030											
CAPRIN1	4076	broad.mit.edu	37	11	34074126	34074126	+	Silent	SNP	C	C	T	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	34074126	C	T	34074126	2	4	689	1	0	0	0	0	0	0	0	1	2637	581	21	2		2	CAPRIN1	11	34074126	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10		34074126	100932390	48	42031											
OR4X1	390113	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	48285540	48285540	+	Missense_Mutation	SNP	T	T	C	rs144193033		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	48285540	T	C	48285540	3	2	689	1	0	0	0	0	1	0	0	0	11091	1493	52	3	130	3	OR4X1	11	48285540	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	14211414	48285540	86720976	49	42032											
OR4C12	283093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	50004015	50004015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	50004015	G	A	50004015	3	1	689	1	0	0	0	0	1	0	0	0	11053	1029	36	2	910	2	OR4C12	11	50004015	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	1718475	50004015	85002501	50	42033											
OR5M9	390162	mdanderson.org;bcgsc.ca	37	11	56230678	56230678	+	Missense_Mutation	SNP	G	G	A	rs61902871	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	56230678	G	A	56230678	3	1	689	1	0	0	0	0	1	0	0	0	11184	1087	38	1	734	1	OR5M9	11	56230678	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	6226663	56230678	78775838	51	42034											
P2RY2	5029	ucsc.edu;mdanderson.org	37	11	72945651	72945651	+	Silent	SNP	C	C	T	rs147817701	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	72945651	C	T	72945651	2	4	689	1	0	0	0	0	0	0	0	1	11359	547	19	1		1	P2RY2	11	72945651	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10	16714973	72945651	62060865	52	42035											
MPZL3	196264	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	118111082	118111082	+	Silent	SNP	G	G	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	118111082	G	A	118111082	2	1	689	1	0	0	0	0	0	0	0	1	9758	1048	37	1		1	MPZL3	11	118111082	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10	45165431	118111082	16895434	53	42036											
KRT6A	3853	mdanderson.org	37	12	52886641	52886641	+	Missense_Mutation	SNP	C	C	T	rs681063	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	52886641	C	T	52886641	3	4	689	1	0	0	0	0	1	0	0	0	8487	507	18	2	1398	2	KRT6A	12	52886641	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10		52886641	80965254	54	42037											
SRGAP1	57522	hgsc.bcm.edu	37	12	64536390	64536390	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	64536390	A	C	64536390	3	2	689	1	0	0	0	0	1	0	0	0	15157	14	1	5	3282	5	SRGAP1	12	64536390	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	11649749	64536390	69315505	55	42038											
C1QTNF9B	387911	ucsc.edu	37	13	24465600	24465600	+	Missense_Mutation	SNP	C	C	T	rs3864969	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	24465600	C	T	24465600	3	4	689	1	0	0	0	0	1	0	0	0	1973	913	32	2	174	2	C1QTNF9B	13	24465600	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10		24465600	90704278	56	42039											
PRMT5	10419	broad.mit.edu	37	14	23393288	23393288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	23393288	T	C	23393288	3	2	689	1	0	0	0	0	1	0	0	0	12549	1551	54	3	633	3	PRMT5	14	23393288	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10		23393288	83956252	57	42040											
AHNAK2	113146	broad.mit.edu	37	14	105412335	105412335	+	Silent	SNP	C	C	T	rs202104959	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	105412335	C	T	105412335	2	4	689	1	0	0	0	0	0	0	0	1	415	523	19	1		1	AHNAK2	14	105412335	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10	82019047	105412335	1937205	58	42041											
EIF2AK4	440275	broad.mit.edu	37	15	40257897	40257897	+	Silent	SNP	A	A	G	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	40257897	A	G	40257897	2	3	689	1	0	0	0	0	0	0	0	1	5001	40	2	3		3	EIF2AK4	15	40257897	Silent	SNP	A	TCGA-KM-8442-01A-11D-2310-10		40257897	62273495	59	42042											
DPP8	54878	bcgsc.ca	37	15	65743404	65743404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	65743404	A	G	65743404	3	3	689	1	0	0	0	0	1	0	0	0	4734	275	10	3	197	3	DPP8	15	65743404	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	25485507	65743404	36787988	60	42043											
ADAMTS7	11173	ucsc.edu;mdanderson.org	37	15	79092750	79092750	+	Silent	SNP	G	G	C	rs7173267	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	79092750	G	C	79092750	2	2	689	1	0	0	0	0	0	0	0	1	271	987	35	4		4	ADAMTS7	15	79092750	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10	13349346	79092750	23438642	61	42044											
FSD2	123722	broad.mit.edu;mdanderson.org	37	15	83451563	83451563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	83451563	T	C	83451563	3	2	689	1	0	0	0	0	1	0	0	0	6078	1609	56	3	1339	3	FSD2	15	83451563	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	4358813	83451563	19079829	62	42045											
WFIKKN1	117166	mdanderson.org	37	16	681284	681284	+	Silent	SNP	C	C	T	rs8062289	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	681284	C	T	681284	2	4	689	1	0	0	0	0	0	0	0	1	17370	680	24	2		2	WFIKKN1	16	681284	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10		681284	89673469	63	42046											
CACNA1H	8912	mdanderson.org	37	16	1252259	1252259	+	Silent	SNP	A	A	G	rs9934839	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	1252259	A	G	1252259	2	3	689	1	0	0	0	0	0	0	0	1	2547	272	10	3		3	CACNA1H	16	1252259	Silent	SNP	A	TCGA-KM-8442-01A-11D-2310-10	570975	1252259	89102494	64	42047											
NME3	4832	mdanderson.org	37	16	1820992	1820992	+	Silent	SNP	T	T	A	rs11890	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	1820992	T	A	1820992	2	1	689	1	0	0	0	0	0	0	0	1	10499	1393	49	5		5	NME3	16	1820992	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10	568733	1820992	88533761	65	42048											
KRTAP4-3	85290	mdanderson.org	37	17	39324139	39324139	+	Silent	SNP	T	T	G	rs12603046	bycluster;byfrequency;byhapmap	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	39324139	T	G	39324139	2	3	689	1	0	0	0	0	0	0	0	1	8559	1579	55	5		5	KRTAP4-3	17	39324139	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10		39324139	41871071	66	42049											
GFAP	2670	ucsc.edu	37	17	42985455	42985455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	42985455	T	C	42985455	3	2	689	1	0	0	0	0	1	0	0	0	6344	1667	58	3	72	3	GFAP	17	42985455	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	3661316	42985455	38209755	67	42050											
TCF3	6929	mdanderson.org	37	19	1622116	1622116	+	Silent	SNP	G	G	A	rs2240590	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	1622116	G	A	1622116	2	1	689	1	0	0	0	0	0	0	0	1	15706	1078	38	1		1	TCF3	19	1622116	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		1622116	57506867	68	42051											
IL12RB1	3594	mdanderson.org;bcgsc.ca	37	19	18188408	18188408	+	Missense_Mutation	SNP	C	C	T	rs11575926	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	18188408	C	T	18188408	3	4	689	1	0	0	0	0	1	0	0	0	7633	536	19	1	1702	1	IL12RB1	19	18188408	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	16566292	18188408	40940575	69	42052											
FCGBP	8857	broad.mit.edu	37	19	40380652	40380652	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	-	40380652	A	-	40380652	7	5	689	1	0	1	0	1	0	0	0	0	5785	188	7	0	5610	0	FCGBP	19	40380652	Frame_Shift_Del	DEL	A	TCGA-KM-8442-01A-11D-2310-10	22192244	40380652	18748331	70	42053											
MAP3K10	4294	hgsc.bcm.edu;ucsc.edu	37	19	40719458	40719458	+	Silent	SNP	C	C	T	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	40719458	C	T	40719458	2	4	689	1	0	0	0	0	0	0	0	1	9251	767	27	1		1	MAP3K10	19	40719458	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10	338806	40719458	18409525	71	42054											
CYP2A6	1548	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	41354576	41354576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	41354576	C	T	41354576	3	4	689	1	0	0	0	0	1	0	0	0	4164	893	31	1	1076	1	CYP2A6	19	41354576	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	635118	41354576	17774407	72	42055											
C20orf166	128826	mdanderson.org	37	20	61162267	61162267	+	Missense_Mutation	SNP	T	T	C	rs6062251	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	61162267	T	C	61162267	3	2	689	1	0	0	0	0	1	0	0	0	2097	1696	59	3	86	3	C20orf166	20	61162267	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10		61162267	1863253	73	42056											
BAGE2	85319	mdanderson.org	37	21	11058197	11058197	+	Silent	SNP	G	G	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	11058197	G	A	11058197	2	1	689	1	0	0	0	0	0	0	0	1	1292	963	34	2		2	BAGE2	21	11058197	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		11058197	37071698	74	42057											
SON	6651	broad.mit.edu	37	21	34927419	34927420	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	C	34927420	-	C	34927419	7	5	689	1	0	1	1	0	0	0	0	0	14939	971	34	0	5892	0	SON	21	34927419	Frame_Shift_Ins	INS	-	TCGA-KM-8442-01A-11D-2310-10	23869222	34927419	13202476	75	42058											
DGCR8	54487	broad.mit.edu	37	22	20094117	20094117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	G	20094117	A	G	20094117	3	3	689	1	0	0	0	0	1	0	0	0	4466	43	2	3	1930	3	DGCR8	22	20094117	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10		20094117	31210449	76	42059											
PIWIL3	440822	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	25124310	25124310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	25124310	C	T	25124310	3	4	689	1	0	0	0	0	1	0	0	0	11966	536	19	1	910	1	PIWIL3	22	25124310	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	5030193	25124310	26180256	77	42060											
MOV10L1	54456	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	50581577	50581577	+	Missense_Mutation	SNP	G	G	A	rs140536899		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	50581577	G	A	50581577	3	1	689	1	0	0	0	0	1	0	0	0	9726	1145	40	1	2392	1	MOV10L1	22	50581577	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	25457267	50581577	722989	78	42061											
CACNA1F	778	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	49084509	49084509	+	Silent	SNP	G	G	A	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	A	49084509	G	A	49084509	2	1	689	1	0	0	0	0	0	0	0	1	2545	1074	38	1		1	CACNA1F	23	49084509	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		49084509	106186051	79	42062											
SLC7A3	84889	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	70145693	70145693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	70145693	A	T	70145693	3	4	689	1	0	0	0	0	1	0	0	0	14711	330	12	5	33	5	SLC7A3	23	70145693	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	21061184	70145693	85124867	80	42063											
PCDH11X	27328	mdanderson.org	37	X	91134112	91134112	+	Missense_Mutation	SNP	C	C	T	rs2563388	bysubmitter	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057	T	91134112	C	T	91134112	3	4	689	1	0	0	0	0	1	0	0	0	11515	893	31	1	2879	1	PCDH11X	23	91134112	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	20988419	91134112	64136448	81	42064											
ZBTB48	3104	ucsc.edu	37	1	6646821	6646821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	C	6646821	T	C	6646821	3	2	690	1	0	0	0	0	1	0	0	0	17561	1667	58	3	1125	3	ZBTB48	1	6646821	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		6646821	242603800	1	42065											
HSPG2	3339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	22207292	22207292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	22207292	G	A	22207292	3	1	690	1	0	0	0	0	1	0	0	0	7437	1087	38	1	11652	1	HSPG2	1	22207292	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	15560471	22207292	227043329	2	42066											
ASXL2	55252	broad.mit.edu;hgsc.bcm.edu	37	2	25966455	25966455	+	Silent	SNP	C	C	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	25966455	C	T	25966455	2	4	690	1	0	0	0	0	0	0	0	1	1067	871	31	1		1	ASXL2	2	25966455	Silent	SNP	C	TCGA-KM-8443-01A-11D-2310-10		25966455	217232918	3	42067											
CCT7	10574	ucsc.edu	37	2	73467611	73467611	+	Silent	SNP	T	T	C	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	C	73467611	T	C	73467611	2	2	690	1	0	0	0	0	0	0	0	1	2961	1799	63	3		3	CCT7	2	73467611	Silent	SNP	T	TCGA-KM-8443-01A-11D-2310-10	47501156	73467611	169731762	4	42068											
NBEAL2	23218	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	47041771	47041771	+	Silent	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	47041771	G	A	47041771	2	1	690	1	0	0	0	0	0	0	0	1	10196	1190	42	2		2	NBEAL2	3	47041771	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10		47041771	150980659	5	42069											
BSN	8927	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	49691694	49691694	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	49691694	A	T	49691694	3	4	690	1	0	0	0	0	1	0	0	0	1532	275	10	5	4723	5	BSN	3	49691694	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	2649923	49691694	148330736	6	42070											
DRD3	1814	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	113890761	113890761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	113890761	G	A	113890761	3	1	690	1	0	0	0	0	1	0	0	0	4760	1116	39	1	1147	1	DRD3	3	113890761	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	64199067	113890761	84131669	7	42071											
TIGIT	201633	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	114018494	114018494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	114018494	G	A	114018494	3	1	690	1	0	0	0	0	1	0	0	0	15914	1087	38	1	452	1	TIGIT	3	114018494	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	127733	114018494	84003936	8	42072											
KLF15	28999	broad.mit.edu	37	3	126071789	126071789	+	Splice_Site	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	126071789	G	A	126071789	5	1	690	1	0	0	0	0	0	0	1	0	8350	1130	39	1		1	KLF15	3	126071789	Splice_Site	SNP	G	TCGA-KM-8443-01A-11D-2310-10	12053295	126071789	71950641	9	42073											
CLCN2	1181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	184075816	184075816	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	184075816	C	G	184075816	3	3	690	1	0	0	0	0	1	0	0	0	3465	912	32	4	2227	4	CLCN2	3	184075816	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	58004027	184075816	13946614	10	42074											
MUC4	4585	mdanderson.org	37	3	195515460	195515460	+	Silent	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	195515460	A	G	195515460	2	3	690	1	0	0	0	0	0	0	0	1	9985	214	8	3		3	MUC4	3	195515460	Silent	SNP	A	TCGA-KM-8443-01A-11D-2310-10	11439644	195515460	2506970	11	42075											
TNK2	10188	broad.mit.edu	37	3	195594314	195594314	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	-	195594314	G	-	195594314	7	5	690	1	0	1	0	1	0	0	0	0	16330	1116	39	0	322	0	TNK2	3	195594314	Frame_Shift_Del	DEL	G	TCGA-KM-8443-01A-11D-2310-10	78854	195594314	2428116	12	42076											
UGT2B4	7363	mdanderson.org	37	4	70361420	70361420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	C	70361420	T	C	70361420	3	2	690	1	0	0	0	0	1	0	0	0	16973	1667	58	3	1450	3	UGT2B4	4	70361420	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		70361420	120792856	13	42077											
SNX25	83891	ucsc.edu;mdanderson.org;bcgsc.ca	37	4	186283807	186283807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	186283807	G	A	186283807	3	1	690	1	0	0	0	0	1	0	0	0	14909	1261	44	2	2450	2	SNX25	4	186283807	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	115922387	186283807	4870469	14	42078											
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu	37	5	5463283	5463284	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	TA	5463284	-	TA	5463283	7	5	690	1	0	1	1	0	0	0	0	0	8209	1261	44	0	3886	0	KIAA0947	5	5463283	Frame_Shift_Ins	INS	-	TCGA-KM-8443-01A-11D-2310-10		5463283	175451977	15	42079	567	2									
KIAA0947	23379	bcgsc.ca	37	5	5463284	5463285	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	TA	5463285	-	TA	5463284	7	5	690	1	0	1	1	0	0	0	0	0	8209	1625	57	0	3887	0	KIAA0947	5	5463284	Frame_Shift_Ins	INS	-	TCGA-KM-8443-01A-11D-2310-10	1	5463284	175451976	16	42080	567	2									
TAS2R1	50834	hgsc.bcm.edu;ucsc.edu	37	5	9629359	9629359	+	Silent	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	9629359	G	A	9629359	2	1	690	1	0	0	0	0	0	0	0	1	15577	1281	45	2		2	TAS2R1	5	9629359	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10	4166075	9629359	171285901	17	42081											
GPBP1	65056	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	56545266	56545266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	56545266	G	A	56545266	3	1	690	1	0	0	0	0	1	0	0	0	6602	1290	45	2	886	2	GPBP1	5	56545266	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	46915907	56545266	124369994	18	42082											
GPBP1	65056	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	56545374	56545374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	56545374	G	A	56545374	3	1	690	1	0	0	0	0	1	0	0	0	6602	1291	45	2	994	2	GPBP1	5	56545374	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	108	56545374	124369886	19	42083											
MAP1B	4131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	71493836	71493836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	71493836	G	A	71493836	3	1	690	1	0	0	0	0	1	0	0	0	9235	1029	36	2	4672	2	MAP1B	5	71493836	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	14948462	71493836	109421424	20	42084											
RASA1	5921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	86675579	86675579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	86675579	G	A	86675579	3	1	690	1	0	0	0	0	1	0	0	0	13073	1291	45	2	2601	2	RASA1	5	86675579	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	15181743	86675579	94239681	21	42085											
EBF1	1879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	158526463	158526463	+	Silent	SNP	G	G	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	158526463	G	T	158526463	2	4	690	1	0	0	0	0	0	0	0	1	4882	1164	41	4		4	EBF1	5	158526463	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10	71850884	158526463	22388797	22	42086											
FAM193B	54540	bcgsc.ca	37	5	176966072	176966072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	176966072	C	T	176966072	3	4	690	1	0	0	0	0	1	0	0	0	5529	754	26	2		2	FAM193B	5	176966072	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	18439609	176966072	3949188	23	42087											
PPP1R11	6992	broad.mit.edu	37	6	30035207	30035207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	30035207	G	A	30035207	3	1	690	1	0	0	0	0	1	0	0	0	12363	1232	43	2	22	2	PPP1R11	6	30035207	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		30035207	141079860	24	42088											
SP8	221833	ucsc.edu	37	7	20824901	20824901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	20824901	A	G	20824901	3	3	690	1	0	0	0	0	1	0	0	0	14983	43	2	3	995	3	SP8	7	20824901	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10		20824901	138313762	25	42089											
MYL7	58498	broad.mit.edu;hgsc.bcm.edu	37	7	44179423	44179423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	44179423	C	T	44179423	3	4	690	1	0	0	0	0	1	0	0	0	10060	768	27	1	204	1	MYL7	7	44179423	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	23354522	44179423	114959240	26	42090											
CACNA2D1	781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	81641523	81641523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	81641523	C	T	81641523	3	4	690	1	0	0	0	0	1	0	0	0	2550	797	28	2	2066	2	CACNA2D1	7	81641523	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	37462100	81641523	77497140	27	42091											
TOX	9760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	60031454	60031454	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	60031454	A	T	60031454	4	4	690	1	0	0	0	0	0	1	0	0	16389	108	4	5	1523	5	TOX	8	60031454	Nonsense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10		60031454	86332568	28	42092											
EYA1	2138	broad.mit.edu;mdanderson.org;bcgsc.ca	37	8	72211306	72211306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	72211306	G	T	72211306	3	4	690	1	0	0	0	0	1	0	0	0	5330	1357	47	4	1016	4	EYA1	8	72211306	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	12179852	72211306	74152716	29	42093											
GEM	2669	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	95264412	95264412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	95264412	C	T	95264412	3	4	690	1	0	0	0	0	1	0	0	0	6336	652	23	1	450	1	GEM	8	95264412	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	23053106	95264412	51099610	30	42094											
PRSS3	5646	mdanderson.org	37	9	33797881	33797881	+	Silent	SNP	G	G	A	rs144235891	byfrequency	TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	33797881	G	A	33797881	2	1	690	1	0	0	0	0	0	0	0	1	12632	962	34	2		2	PRSS3	9	33797881	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10		33797881	107415550	31	42095											
TLE1	7088	broad.mit.edu	37	9	84199172	84199172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	C	84199172	T	C	84199172	3	2	690	1	0	0	0	0	1	0	0	0	15950	1763	61	3	62	3	TLE1	9	84199172	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10	50401291	84199172	57014259	32	42096											
OR1L1	26737	broad.mit.edu	37	9	125424320	125424320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	125424320	A	G	125424320	3	3	690	1	0	0	0	0	1	0	0	0	10970	43	2	3	328	3	OR1L1	9	125424320	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	41225148	125424320	15789111	33	42097											
ABL1	25	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	133748274	133748274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	133748274	A	G	133748274	3	3	690	1	0	0	0	0	1	0	0	0	92	449	16	3	1097	3	ABL1	9	133748274	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	8323954	133748274	7465157	34	42098											
LCN10	414332	broad.mit.edu	37	9	139636409	139636409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	139636409	C	T	139636409	3	4	690	1	0	0	0	0	1	0	0	0	8688	855	30	2	441	2	LCN10	9	139636409	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	5888135	139636409	1577022	35	42099											
TUBB8	347688	broad.mit.edu	37	10	93637	93637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	93637	G	A	93637	3	1	690	1	0	0	0	0	1	0	0	0	16773	1261	44	2	643	2	TUBB8	10	93637	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		93637	135441110	36	42100											
CDH23	64072	ucsc.edu	37	10	73572329	73572329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	73572329	A	G	73572329	3	3	690	1	0	0	0	0	1	0	0	0	3110	304	11	3	10155	3	CDH23	10	73572329	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	73478692	73572329	61962418	37	42101											
AMPD3	272	ucsc.edu	37	11	10506508	10506508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	10506508	A	G	10506508	3	3	690	1	0	0	0	0	1	0	0	0	587	159	6	3	796	3	AMPD3	11	10506508	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10		10506508	124500008	38	42102											
RASSF10	644943	ucsc.edu	37	11	13032159	13032159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	13032159	C	T	13032159	3	4	690	1	0	0	0	0	1	0	0	0	13098	681	24	2	1366	2	RASSF10	11	13032159	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	2525651	13032159	121974357	39	42103											
SYT7	9066	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	61291299	61291299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	61291299	C	A	61291299	3	1	690	1	0	0	0	0	1	0	0	0	15491	695	24	4	316	4	SYT7	11	61291299	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	48259140	61291299	73715217	40	42104											
PTS	5805	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	112101359	112101359	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	112101359	C	G	112101359	3	3	690	1	0	0	0	0	1	0	0	0	12831	797	28	4	211	4	PTS	11	112101359	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	50810060	112101359	22905157	41	42105											
KRT76	51350	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	12	53169235	53169235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	C	53169235	T	C	53169235	3	2	690	1	0	0	0	0	1	0	0	0	8496	1551	54	3	1196	3	KRT76	12	53169235	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		53169235	80682660	42	42106											
ITGA5	3678	broad.mit.edu	37	12	54812840	54812840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	54812840	G	T	54812840	3	4	690	1	0	0	0	0	1	0	0	0	7886	1203	42	4	3126	4	ITGA5	12	54812840	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	1643605	54812840	79039055	43	42107											
TBC1D15	64786	broad.mit.edu	37	12	72314554	72314554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	C	72314554	T	C	72314554	3	2	690	1	0	0	0	0	1	0	0	0	15616	1551	54	3	1880	3	TBC1D15	12	72314554	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10	17501714	72314554	61537341	44	42108											
DDX55	57696	broad.mit.edu;mdanderson.org	37	12	124092052	124092052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	124092052	A	G	124092052	3	3	690	1	0	0	0	0	1	0	0	0	4375	72	3	3	334	3	DDX55	12	124092052	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	51777498	124092052	9759843	45	42109											
CHFR	55743	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	133435693	133435693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	133435693	G	A	133435693	3	1	690	1	0	0	0	0	1	0	0	0	3339	1377	48	2	1130	2	CHFR	12	133435693	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	9343641	133435693	416202	46	42110											
SACS	26278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	23915268	23915268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	23915268	T	G	23915268	3	3	690	1	0	0	0	0	1	0	0	0	13817	1841	64	5	10996	5	SACS	13	23915268	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		23915268	91254610	47	42111											
HOMEZ	57594	broad.mit.edu	37	14	23745955	23745955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	C	23745955	T	C	23745955	3	2	690	1	0	0	0	0	1	0	0	0	7288	1551	54	3	1174	3	HOMEZ	14	23745955	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		23745955	83603585	48	42112											
DTWD1	56986	broad.mit.edu	37	15	49935536	49935536	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	-	49935536	C	-	49935536	7	5	690	1	0	1	0	1	0	0	0	0	4793	479	17	0	690	0	DTWD1	15	49935536	Frame_Shift_Del	DEL	C	TCGA-KM-8443-01A-11D-2310-10		49935536	52595856	49	42113											
SIN3A	25942	broad.mit.edu	37	15	75682085	75682085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	75682085	A	G	75682085	3	3	690	1	0	0	0	0	1	0	0	0	14338	333	12	3	916	3	SIN3A	15	75682085	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	25746549	75682085	26849307	50	42114											
BCAR1	9564	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	16	75270827	75270827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	75270827	C	T	75270827	3	4	690	1	0	0	0	0	1	0	0	0	1348	536	19	1	1817	1	BCAR1	16	75270827	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10		75270827	15083926	51	42115											
SMCHD1	23347	mdanderson.org	37	18	2707619	2707619	+	Missense_Mutation	SNP	G	G	A	rs2276092	byfrequency	TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	2707619	G	A	2707619	3	1	690	1	0	0	0	0	1	0	0	0	14801	1261	44	2	2184	2	SMCHD1	18	2707619	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		2707619	75369629	52	42116											
SERPINB3	6317	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	18	61323171	61323171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	61323171	G	A	61323171	3	1	690	1	0	0	0	0	1	0	0	0	14115	1145	40	1	283	1	SERPINB3	18	61323171	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	58615552	61323171	16754077	53	42117											
SEMA6B	10501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	4557004	4557004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	4557004	G	A	4557004	3	1	690	1	0	0	0	0	1	0	0	0	14053	1232	43	2	2390	2	SEMA6B	19	4557004	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		4557004	54571979	54	42118											
CLEC4G	339390	ucsc.edu	37	19	7796207	7796207	+	Splice_Site	SNP	T	T	C	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	C	7796207	T	C	7796207	5	2	690	1	0	0	0	0	0	0	1	0	3519	1594	55	3	744	3	CLEC4G	19	7796207	Splice_Site	SNP	T	TCGA-KM-8443-01A-11D-2310-10	3239203	7796207	51332776	55	42119											
MYO1F	4542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	8615207	8615207	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	8615207	T	A	8615207	3	1	690	1	0	0	0	0	1	0	0	0	10080	1667	58	5	2434	5	MYO1F	19	8615207	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10	819000	8615207	50513776	56	42120											
RFX1	5989	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	14076447	14076447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	14076447	G	A	14076447	3	1	690	1	0	0	0	0	1	0	0	0	13275	1203	42	2	863	2	RFX1	19	14076447	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	5461240	14076447	45052536	57	42121											
CYP4F2	8529	broad.mit.edu	37	19	16000303	16000303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	16000303	A	G	16000303	3	3	690	1	0	0	0	0	1	0	0	0	4190	43	2	3	742	3	CYP4F2	19	16000303	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	1923856	16000303	43128680	58	42122											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	38976258	38976258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	38976258	C	T	38976258	3	4	690	1	0	0	0	0	1	0	0	0	13781	768	27	1	5097	1	RYR1	19	38976258	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	22975955	38976258	20152725	59	42123											
RSPH6A	81492	ucsc.edu	37	19	46318402	46318402	+	Silent	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	46318402	A	G	46318402	2	3	690	1	0	0	0	0	0	0	0	1	13720	175	7	3		3	RSPH6A	19	46318402	Silent	SNP	A	TCGA-KM-8443-01A-11D-2310-10	7342144	46318402	12810581	60	42124											
EHD2	30846	broad.mit.edu;bcgsc.ca	37	19	48220038	48220038	+	Missense_Mutation	SNP	G	G	A	rs34140460	byfrequency	TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	48220038	G	A	48220038	3	1	690	1	0	0	0	0	1	0	0	0	4980	1116	39	1	171	1	EHD2	19	48220038	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	1901636	48220038	10908945	61	42125											
MX2	4600	bcgsc.ca	37	21	42770882	42770882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	42770882	A	G	42770882	3	3	690	1	0	0	0	0	1	0	0	0	10005	304	11	3	1238	3	MX2	21	42770882	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10		42770882	5359013	62	42126											
MCM3AP	8888	ucsc.edu	37	21	47697480	47697480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	47697480	A	G	47697480	3	3	690	1	0	0	0	0	1	0	0	0	9395	391	14	3	4219	3	MCM3AP	21	47697480	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	4926598	47697480	432415	63	42127											
CSF2RB	1439	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	37334203	37334203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	T	37334203	G	T	37334203	3	4	690	1	0	0	0	0	1	0	0	0	3937	1377	48	4	2403	4	CSF2RB	22	37334203	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		37334203	13970363	64	42128											
TTLL1	25809	broad.mit.edu	37	22	43459837	43459837	+	Silent	SNP	G	G	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	43459837	G	A	43459837	2	1	690	1	0	0	0	0	0	0	0	1	16734	1045	37	1		1	TTLL1	22	43459837	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10	6125634	43459837	7844729	65	42129											
PRR5-ARHGAP8	553158	ucsc.edu	37	22	45243892	45243892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	C	45243892	T	C	45243892	3	2	690	1	0	0	0	0	1	0	0	0	12611	1696	59	3	1122	3	PRR5-ARHGAP8	22	45243892	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10	1784055	45243892	6060674	66	42130											
NUP50	10762	mdanderson.org	37	22	45574342	45574342	+	Silent	SNP	A	A	G	rs13209197		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	G	45574342	A	G	45574342	2	3	690	1	0	0	0	0	0	0	0	1	10773	69	3	3		3	NUP50	22	45574342	Silent	SNP	A	TCGA-KM-8443-01A-11D-2310-10	330450	45574342	5730224	67	42131											
MAGEC1	9947	mdanderson.org	37	X	140994087	140994087	+	Silent	SNP	C	C	A	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708	A	140994087	C	A	140994087	2	1	690	1	0	0	0	0	0	0	0	1	9187	610	22	4		4	MAGEC1	23	140994087	Silent	SNP	C	TCGA-KM-8443-01A-11D-2310-10		140994087	14276473	68	42132											
PLEKHG5	57449	ucsc.edu	37	1	6531590	6531590	+	Silent	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	6531590	T	C	6531590	2	2	691	1	0	0	0	0	0	0	0	1	12080	1538	54	3		3	PLEKHG5	1	6531590	Silent	SNP	T	TCGA-KM-8476-01A-11D-2310-10		6531590	242719031	1	42133											
SFPQ	6421	ucsc.edu;bcgsc.ca	37	1	35658491	35658491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	35658491	T	C	35658491	3	2	691	1	0	0	0	0	1	0	0	0	14173	1551	54	3	2003	3	SFPQ	1	35658491	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	29126901	35658491	213592130	2	42134											
CAP1	10487	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	40537164	40537164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	40537164	G	A	40537164	3	1	691	1	0	0	0	0	1	0	0	0	2621	1116	39	1	1433	1	CAP1	1	40537164	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	4878673	40537164	208713457	3	42135											
TCHHL1	126637	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	152060616	152060616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	152060616	G	A	152060616	3	1	691	1	0	0	0	0	1	0	0	0	15713	1203	42	2	2718	2	TCHHL1	1	152060616	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	111523452	152060616	97190005	4	42136											
HRNR	388697	mdanderson.org	37	1	152187510	152187510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	152187510	C	T	152187510	3	4	691	1	0	0	0	0	1	0	0	0	7366	652	23	1	1961	1	HRNR	1	152187510	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	126894	152187510	97063111	5	42137											
RC3H1	149041	mdanderson.org;bcgsc.ca	37	1	173921192	173921192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	173921192	C	A	173921192	3	1	691	1	0	0	0	0	1	0	0	0	13179	652	23	4	974	4	RC3H1	1	173921192	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	21733682	173921192	75329429	6	42138											
OR2M2	391194	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	248343361	248343361	+	Missense_Mutation	SNP	C	C	T	rs146796261	alternate_allele	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	248343361	C	T	248343361	3	4	691	1	0	0	0	0	1	0	0	0	11017	536	19	1	76	1	OR2M2	1	248343361	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	74422169	248343361	907260	7	42139											
ARHGAP15	55843	broad.mit.edu	37	2	143959765	143959765	+	Silent	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	143959765	A	G	143959765	2	3	691	1	0	0	0	0	0	0	0	1	866	40	2	3		3	ARHGAP15	2	143959765	Silent	SNP	A	TCGA-KM-8476-01A-11D-2310-10		143959765	99239608	8	42140											
OR6B3	150681	broad.mit.edu	37	2	240984793	240984793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	240984793	C	T	240984793	3	4	691	1	0	0	0	0	1	0	0	0	11196	652	23	1	301	1	OR6B3	2	240984793	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	97025028	240984793	2214580	9	42141											
SLC4A7	9497	mdanderson.org	37	3	27444780	27444780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	27444780	A	G	27444780	3	3	691	1	0	0	0	0	1	0	0	0	14671	72	3	3	1544	3	SLC4A7	3	27444780	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10		27444780	170577650	10	42142											
LAMB2	3913	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	49162828	49162828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	49162828	G	A	49162828	3	1	691	1	0	0	0	0	1	0	0	0	8618	1058	37	1	2874	1	LAMB2	3	49162828	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	21718048	49162828	148859602	11	42143											
CYB561D2	11068	broad.mit.edu;bcgsc.ca	37	3	50391044	50391044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	50391044	T	C	50391044	3	2	691	1	0	0	0	0	1	0	0	0	4123	1551	54	3	548	3	CYB561D2	3	50391044	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	1228216	50391044	147631386	12	42144											
DNAH1	25981	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	52365211	52365211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	52365211	G	A	52365211	3	1	691	1	0	0	0	0	1	0	0	0	4599	1145	40	1	941	1	DNAH1	3	52365211	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	1974167	52365211	145657219	13	42145											
DNAH12	201625	broad.mit.edu	37	3	57438684	57438684	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	-	57438684	A	-	57438684	7	5	691	1	0	1	0	1	0	0	0	0	4602	214	8	0	5815	0	DNAH12	3	57438684	Frame_Shift_Del	DEL	A	TCGA-KM-8476-01A-11D-2310-10	5073473	57438684	140583746	14	42146											
DCBLD2	131566	mdanderson.org	37	3	98620083	98620083	+	Missense_Mutation	SNP	G	G	C	rs190637453		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	98620083	G	C	98620083	3	2	691	1	0	0	0	0	1	0	0	0	4283	971	34	4	2303	4	DCBLD2	3	98620083	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	41181399	98620083	99402347	15	42147											
ABTB1	80325	hgsc.bcm.edu	37	3	127396057	127396057	+	Silent	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	127396057	C	T	127396057	2	4	691	1	0	0	0	0	0	0	0	1	102	610	22	2		2	ABTB1	3	127396057	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	28775974	127396057	70626373	16	42148											
TRPC1	7220	broad.mit.edu	37	3	142525034	142525034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	142525034	G	T	142525034	3	4	691	1	0	0	0	0	1	0	0	0	16590	1203	42	4	2283	4	TRPC1	3	142525034	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	15128977	142525034	55497396	17	42149											
TP63	8626	ucsc.edu;mdanderson.org;bcgsc.ca	37	3	189455532	189455532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	189455532	C	A	189455532	3	1	691	1	0	0	0	0	1	0	0	0	16404	883	31	4	72	4	TP63	3	189455532	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	46930498	189455532	8566898	18	42150											
MUC4	4585	mdanderson.org	37	3	195507155	195507155	+	Missense_Mutation	SNP	C	C	T	rs202193697		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	195507155	C	T	195507155	3	4	691	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195507155	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	6051623	195507155	2515275	19	42151											
MUC4	4585	mdanderson.org	37	3	195512646	195512646	+	Silent	SNP	C	C	G	rs3107750	byfrequency	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	195512646	C	G	195512646	2	3	691	1	0	0	0	0	0	0	0	1	9985	755	27	4		4	MUC4	3	195512646	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	5491	195512646	2509784	20	42152											
GK2	2712	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	80327734	80327734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	80327734	C	T	80327734	3	4	691	1	0	0	0	0	1	0	0	0	6428	507	18	2	44	2	GK2	4	80327734	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		80327734	110826542	21	42153											
FNIP2	57600	broad.mit.edu;mdanderson.org	37	4	159780275	159780275	+	Silent	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	159780275	G	A	159780275	2	1	691	1	0	0	0	0	0	0	0	1	5983	1165	41	2		2	FNIP2	4	159780275	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	79452541	159780275	31374001	22	42154											
FRG1	2483	mdanderson.org	37	4	190883004	190883004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	190883004	C	A	190883004	3	1	691	1	0	0	0	0	1	0	0	0	6053	477	17	4	687	4	FRG1	4	190883004	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	31102729	190883004	271272	23	42155											
PRDM9	56979	broad.mit.edu;mdanderson.org	37	5	23527628	23527628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	23527628	C	T	23527628	3	4	691	1	0	0	0	0	1	0	0	0	12473	759	27	1	2469	1	PRDM9	5	23527628	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		23527628	157387632	24	42156											
PCDHA8	56140	broad.mit.edu	37	5	140223107	140223107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	140223107	C	T	140223107	3	4	691	1	0	0	0	0	1	0	0	0	11537	768	27	1	2203	1	PCDHA8	5	140223107	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	116695479	140223107	40692153	25	42157											
SLC25A2	83884	broad.mit.edu	37	5	140683388	140683388	+	Silent	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	140683388	C	T	140683388	2	4	691	1	0	0	0	0	0	0	0	1	14495	639	23	1		1	SLC25A2	5	140683388	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	460281	140683388	40231872	26	42158											
PCDH12	51294	broad.mit.edu;mdanderson.org	37	5	141335867	141335867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	141335867	A	G	141335867	3	3	691	1	0	0	0	0	1	0	0	0	11517	275	10	3	2020	3	PCDH12	5	141335867	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	652479	141335867	39579393	27	42159											
GRIA1	2890	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	153065877	153065877	+	Silent	SNP	C	C	T	rs140876127		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	153065877	C	T	153065877	2	4	691	1	0	0	0	0	0	0	0	1	6774	535	19	1		1	GRIA1	5	153065877	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	11730010	153065877	27849383	28	42160											
FLT4	2324	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	180053237	180053237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	180053237	G	A	180053237	3	1	691	1	0	0	0	0	1	0	0	0	5951	1087	38	1	3055	1	FLT4	5	180053237	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	26987360	180053237	862023	29	42161											
HIVEP1	3096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	12162043	12162043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	12162043	G	A	12162043	3	1	691	1	0	0	0	0	1	0	0	0	7193	1058	37	1	6885	1	HIVEP1	6	12162043	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10		12162043	158953024	30	42162											
MUC21	394263	mdanderson.org	37	6	30955158	30955158	+	Silent	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	30955158	C	T	30955158	2	4	691	1	0	0	0	0	0	0	0	1	9984	581	21	2		2	MUC21	6	30955158	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	18793115	30955158	140159909	31	42163											
SYNGAP1	8831	ucsc.edu	37	6	33400504	33400504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	33400504	A	G	33400504	3	3	691	1	0	0	0	0	1	0	0	0	15459	43	2	3	448	3	SYNGAP1	6	33400504	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	2445346	33400504	137714563	32	42164											
GRM1	2911	broad.mit.edu;ucsc.edu	37	6	146720023	146720023	+	Silent	SNP	G	G	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	146720023	G	T	146720023	2	4	691	1	0	0	0	0	0	0	0	1	6803	1364	48	4		4	GRM1	6	146720023	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	113319519	146720023	24395044	33	42165											
PLG	5340	bcgsc.ca	37	6	161143514	161143514	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	161143514	A	T	161143514	3	4	691	1	0	0	0	0	1	0	0	0	12093	159	6	5	1213	5	PLG	6	161143514	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	14423491	161143514	9971553	34	42166											
SFT2D1	113402	broad.mit.edu	37	6	166736357	166736357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	166736357	A	G	166736357	3	3	691	1	0	0	0	0	1	0	0	0	14198	333	12	3	59	3	SFT2D1	6	166736357	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	5592843	166736357	4378710	35	42167											
MUC17	140453	mdanderson.org	37	7	100680472	100680472	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	100680472	G	C	100680472	3	2	691	1	0	0	0	0	1	0	0	0	9981	1194	42	4	5785	4	MUC17	7	100680472	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10		100680472	58458191	36	42168											
PMPCB	9512	broad.mit.edu	37	7	102944340	102944340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	102944340	A	G	102944340	3	3	691	1	0	0	0	0	1	0	0	0	12148	304	11	3	527	3	PMPCB	7	102944340	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	2263868	102944340	56194323	37	42169											
ABP1	26	broad.mit.edu;mdanderson.org	37	7	150555109	150555109	+	Silent	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	150555109	C	T	150555109	2	4	691	1	0	0	0	0	0	0	0	1	98	755	27	1		1	ABP1	7	150555109	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	47610769	150555109	8583554	38	42170											
DEFA3	1668	mdanderson.org	37	8	6873603	6873603	+	Missense_Mutation	SNP	T	T	G	rs2230231	bycluster;byfrequency;byhapmap	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	6873603	T	G	6873603	3	3	691	1	0	0	0	0	1	0	0	0	4392	1667	58	5	94	5	DEFA3	8	6873603	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10		6873603	139490419	39	42171											
MFHAS1	9258	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	8748357	8748357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	8748357	T	A	8748357	3	1	691	1	0	0	0	0	1	0	0	0	9528	1812	63	5	958	5	MFHAS1	8	8748357	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	1874754	8748357	137615665	40	42172											
PABPC1	26986	broad.mit.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	101724606	G	A	101724606	3	1	691	1	0	0	0	0	1	0	0	0	11370	1377	48	2	986	2	PABPC1	8	101724606	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	92976249	101724606	44639416	41	42173											
ADCY8	114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	131922101	131922101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	131922101	G	A	131922101	3	1	691	1	0	0	0	0	1	0	0	0	300	1294	45	2	2314	2	ADCY8	8	131922101	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	30197495	131922101	14441921	42	42174											
CNTNAP3	79937	mdanderson.org	37	9	39103743	39103743	+	Missense_Mutation	SNP	C	C	T	rs7852039	byfrequency	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	39103743	C	T	39103743	3	4	691	1	0	0	0	0	1	0	0	0	3650	536	19	1	1368	1	CNTNAP3	9	39103743	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		39103743	102109688	43	42175											
PCSK5	5125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	78749078	78749078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	78749078	C	T	78749078	3	4	691	1	0	0	0	0	1	0	0	0	11610	768	27	1	1300	1	PCSK5	9	78749078	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	39645335	78749078	62464353	44	42176											
ODF2	4957	broad.mit.edu	37	9	131245156	131245156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	131245156	A	G	131245156	3	3	691	1	0	0	0	0	1	0	0	0	10834	130	5	3	1066	3	ODF2	9	131245156	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	52496078	131245156	9968275	45	42177											
NUP188	23511	broad.mit.edu	37	9	131750367	131750367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	131750367	A	G	131750367	3	3	691	1	0	0	0	0	1	0	0	0	10765	72	3	3	2529	3	NUP188	9	131750367	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	505211	131750367	9463064	46	42178											
PPAPDC3	84814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	134165625	134165625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	134165625	G	A	134165625	3	1	691	1	0	0	0	0	1	0	0	0	12303	1087	38	1	243	1	PPAPDC3	9	134165625	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	2415258	134165625	7047806	47	42179											
ZMYND11	10771	bcgsc.ca	37	10	283550	283550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	283550	A	G	283550	3	3	691	1	0	0	0	0	1	0	0	0	17718	72	3	3	560	3	ZMYND11	10	283550	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10		283550	135251197	48	42180											
CUL2	8453	ucsc.edu;bcgsc.ca	37	10	35333504	35333504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	35333504	T	C	35333504	3	2	691	1	0	0	0	0	1	0	0	0	4057	1406	49	3	1589	3	CUL2	10	35333504	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	35049954	35333504	100201243	49	42181											
ANK3	288	broad.mit.edu	37	10	61832802	61832802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	61832802	C	T	61832802	3	4	691	1	0	0	0	0	1	0	0	0	622	739	26	2	5637	2	ANK3	10	61832802	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	26499298	61832802	73701945	50	42182											
NRAP	4892	hgsc.bcm.edu;mdanderson.org	37	10	115381805	115381805	+	Silent	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	115381805	G	A	115381805	2	1	691	1	0	0	0	0	0	0	0	1	10645	1049	37	1		1	NRAP	10	115381805	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	53549003	115381805	20152942	51	42183											
TCERG1L	256536	broad.mit.edu	37	10	132932683	132932683	+	Silent	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	132932683	T	C	132932683	2	2	691	1	0	0	0	0	0	0	0	1	15698	1606	56	3		3	TCERG1L	10	132932683	Silent	SNP	T	TCGA-KM-8476-01A-11D-2310-10	17550878	132932683	2602064	52	42184											
FRG2B	441581	mdanderson.org	37	10	135439015	135439015	+	Missense_Mutation	SNP	T	T	C	rs75470891		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	135439015	T	C	135439015	3	2	691	1	0	0	0	0	1	0	0	0	6054	1435	50	3	414	3	FRG2B	10	135439015	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	2506332	135439015	95732	53	42185											
SIRT3	23410	broad.mit.edu	37	11	224195	224195	+	Silent	SNP	G	G	A	rs202035351		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	224195	G	A	224195	2	1	691	1	0	0	0	0	0	0	0	1	14352	1103	39	1		1	SIRT3	11	224195	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10		224195	134782321	54	42186											
MUC2	4583	mdanderson.org	37	11	1093452	1093452	+	Silent	SNP	G	G	A	rs34136803		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	1093452	G	A	1093452	2	1	691	1	0	0	0	0	0	0	0	1	9982	1045	37	1		1	MUC2	11	1093452	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	869257	1093452	133913064	55	42187											
DNHD1	144132	bcgsc.ca	37	11	6591281	6591281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	6591281	G	T	6591281	3	4	691	1	0	0	0	0	1	0	0	0	4670	962	34	4	13065	4	DNHD1	11	6591281	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	5497829	6591281	128415235	56	42188											
MICALCL	84953	mdanderson.org	37	11	12316389	12316389	+	Missense_Mutation	SNP	A	A	C	rs3812754		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	12316389	A	C	12316389	3	2	691	1	0	0	0	0	1	0	0	0	9579	391	14	5	1417	5	MICALCL	11	12316389	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	5725108	12316389	122690127	57	42189											
SLC43A1	8501	broad.mit.edu	37	11	57268329	57268329	+	Splice_Site	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	57268329	C	T	57268329	5	4	691	1	0	0	0	0	0	0	1	0	14645	811	28	2	1335	2	SLC43A1	11	57268329	Splice_Site	SNP	C	TCGA-KM-8476-01A-11D-2310-10	44951940	57268329	77738187	58	42190											
ARHGEF17	9828	hgsc.bcm.edu	37	11	73073258	73073258	+	Silent	SNP	G	G	T	rs148923147	by1000genomes	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	73073258	G	T	73073258	2	4	691	1	0	0	0	0	0	0	0	1	900	1306	46	4		4	ARHGEF17	11	73073258	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	15804929	73073258	61933258	59	42191											
INTS4	92105	mdanderson.org	37	11	77614592	77614592	+	Silent	SNP	C	C	T	rs140666680		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	77614592	C	T	77614592	2	4	691	1	0	0	0	0	0	0	0	1	7787	871	31	1		1	INTS4	11	77614592	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	4541334	77614592	57391924	60	42192											
TRIM49	57093	mdanderson.org	37	11	89531533	89531533	+	Missense_Mutation	SNP	G	G	T	rs570297	bycluster	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	89531533	G	T	89531533	3	4	691	1	0	0	0	0	1	0	0	0	16536	1087	38	4	238	4	TRIM49	11	89531533	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	11916941	89531533	45474983	61	42193											
PGR	5241	ucsc.edu	37	11	100999187	100999187	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	100999187	C	T	100999187	4	4	691	1	0	0	0	0	0	1	0	0	11812	508	18	2	2218	2	PGR	11	100999187	Nonsense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	11467654	100999187	34007329	62	42194											
CASP4	837	broad.mit.edu	37	11	104825546	104825546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	104825546	T	C	104825546	3	2	691	1	0	0	0	0	1	0	0	0	2675	1792	62	3	971	3	CASP4	11	104825546	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	3826359	104825546	30180970	63	42195											
HSPA8	3312	mdanderson.org	37	11	122931403	122931403	+	Silent	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	122931403	G	A	122931403	2	1	691	1	0	0	0	0	0	0	0	1	7423	1161	41	2		2	HSPA8	11	122931403	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	18105857	122931403	12075113	64	42196											
GALNT8	26290	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	4854614	4854614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	4854614	C	T	4854614	3	4	691	1	0	0	0	0	1	0	0	0	6226	875	31	1	898	1	GALNT8	12	4854614	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		4854614	128997281	65	42197											
PRB2	653247	mdanderson.org	37	12	11546262	11546262	+	Silent	SNP	G	G	A	rs199808121	byfrequency	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	11546262	G	A	11546262	2	1	691	1	0	0	0	0	0	0	0	1	12453	1306	46	2		2	PRB2	12	11546262	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	6691648	11546262	122305633	66	42198											
EIF4B	1975	broad.mit.edu	37	12	53416356	53416356	+	Silent	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	53416356	T	C	53416356	2	2	691	1	0	0	0	0	0	0	0	1	5029	1509	53	3		3	EIF4B	12	53416356	Silent	SNP	T	TCGA-KM-8476-01A-11D-2310-10	41870094	53416356	80435539	67	42199											
OR6C74	254783	mdanderson.org	37	12	55641157	55641157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	55641157	T	C	55641157	3	2	691	1	0	0	0	0	1	0	0	0	11205	1609	56	3	88	3	OR6C74	12	55641157	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	2224801	55641157	78210738	68	42200											
ACACB	32	broad.mit.edu	37	12	109577282	109577282	+	Silent	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	109577282	G	A	109577282	2	1	691	1	0	0	0	0	0	0	0	1	107	1161	41	2		2	ACACB	12	109577282	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	53936125	109577282	24274613	69	42201											
TMEM132B	114795	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	126137027	126137027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	126137027	C	T	126137027	3	4	691	1	0	0	0	0	1	0	0	0	16058	536	19	1	1970	1	TMEM132B	12	126137027	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	16559745	126137027	7714868	70	42202											
HEATR5A	25938	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	14	31844040	31844040	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	31844040	G	A	31844040	4	1	691	1	0	0	0	0	0	1	0	0	7038	1153	40	1	4397	1	HEATR5A	14	31844040	Nonsense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10		31844040	75505500	71	42203											
AHNAK2	113146	mdanderson.org	37	14	105416223	105416223	+	Silent	SNP	G	G	A	rs141406015		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	105416223	G	A	105416223	2	1	691	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105416223	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	73572183	105416223	1933317	72	42204											
MYO5A	4644	broad.mit.edu;mdanderson.org	37	15	52613683	52613683	+	Silent	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	52613683	A	G	52613683	2	3	691	1	0	0	0	0	0	0	0	1	10085	291	11	3		3	MYO5A	15	52613683	Silent	SNP	A	TCGA-KM-8476-01A-11D-2310-10		52613683	49917709	73	42205											
SLC24A1	9187	broad.mit.edu;mdanderson.org	37	15	65946296	65946296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	65946296	C	T	65946296	3	4	691	1	0	0	0	0	1	0	0	0	14478	768	27	1	1319	1	SLC24A1	15	65946296	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	13332613	65946296	36585096	74	42206											
SH3GL3	6457	broad.mit.edu	37	15	84286962	84286962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	84286962	T	C	84286962	3	2	691	1	0	0	0	0	1	0	0	0	14265	1638	57	3	1001	3	SH3GL3	15	84286962	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	18340666	84286962	18244430	75	42207											
SOX8	30812	mdanderson.org	37	16	1034954	1034954	+	Silent	SNP	T	T	C	rs11542178		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	1034954	T	C	1034954	2	2	691	1	0	0	0	0	0	0	0	1	14970	1471	51	3		3	SOX8	16	1034954	Silent	SNP	T	TCGA-KM-8476-01A-11D-2310-10		1034954	89319799	76	42208											
XYLT1	64131	hgsc.bcm.edu	37	16	17202636	17202636	+	Silent	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	17202636	G	A	17202636	2	1	691	1	0	0	0	0	0	0	0	1	17475	987	35	2		2	XYLT1	16	17202636	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	16167682	17202636	73152117	77	42209											
IL4R	3566	broad.mit.edu	37	16	27374339	27374339	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	27374339	C	T	27374339	4	4	691	1	0	0	0	0	0	1	0	0	7705	644	23	1	1718	1	IL4R	16	27374339	Nonsense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	10171703	27374339	62980414	78	42210											
MAPK3	5595	broad.mit.edu	37	16	30128535	30128535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	30128535	A	G	30128535	3	3	691	1	0	0	0	0	1	0	0	0	9286	275	10	3	361	3	MAPK3	16	30128535	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	2754196	30128535	60226218	79	42211											
ST3GAL2	6483	broad.mit.edu	37	16	70432188	70432188	+	Silent	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	70432188	G	A	70432188	2	1	691	1	0	0	0	0	0	0	0	1	15227	1103	39	1		1	ST3GAL2	16	70432188	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	40303653	70432188	19922565	80	42212											
SDR42E1	93517	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	82032717	82032717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	82032717	C	A	82032717	3	1	691	1	0	0	0	0	1	0	0	0	13986	837	29	4	4	4	SDR42E1	16	82032717	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	11600529	82032717	8322036	81	42213											
USP10	9100	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	84793019	84793019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	84793019	C	A	84793019	3	1	691	1	0	0	0	0	1	0	0	0	17053	825	29	4	1357	4	USP10	16	84793019	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	2760302	84793019	5561734	82	42214											
MYH1	4619	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	10395792	10395792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	10395792	C	T	10395792	3	4	691	1	0	0	0	0	1	0	0	0	10036	507	18	2	62	2	MYH1	17	10395792	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		10395792	70799418	83	42215											
TRIM16	10626	broad.mit.edu	37	17	15534987	15534987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	15534987	G	A	15534987	3	1	691	1	0	0	0	0	1	0	0	0	16503	1087	38	1	645	1	TRIM16	17	15534987	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	5139195	15534987	65660223	84	42216											
ULK2	9706	ucsc.edu	37	17	19705212	19705212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	19705212	T	C	19705212	3	2	691	1	0	0	0	0	1	0	0	0	16988	1725	60	3	1839	3	ULK2	17	19705212	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	4170225	19705212	61489998	85	42217											
LRRC37A	9884	ucsc.edu	37	17	44408776	44408776	+	Missense_Mutation	SNP	T	T	C	rs273532	bycluster	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	44408776	T	C	44408776	3	2	691	1	0	0	0	0	1	0	0	0	8998	1609	56	3	4167	3	LRRC37A	17	44408776	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	24703564	44408776	36786434	86	42218											
DLX3	1747	ucsc.edu	37	17	48072253	48072253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	48072253	A	G	48072253	3	3	691	1	0	0	0	0	1	0	0	0	4574	275	10	3	765	3	DLX3	17	48072253	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	3663477	48072253	33122957	87	42219											
RNF43	54894	ucsc.edu	37	17	56439960	56439960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	56439960	A	G	56439960	3	3	691	1	0	0	0	0	1	0	0	0	13508	159	6	3	1739	3	RNF43	17	56439960	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	8367707	56439960	24755250	88	42220											
LRRC37A3	374819	bcgsc.ca	37	17	62892919	62892919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	62892919	C	A	62892919	3	1	691	1	0	0	0	0	1	0	0	0	9000	913	32	4	4495	4	LRRC37A3	17	62892919	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	6452959	62892919	18302291	89	42221											
ESCO1	114799	hgsc.bcm.edu;ucsc.edu	37	18	19116141	19116141	+	Silent	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	19116141	G	A	19116141	2	1	691	1	0	0	0	0	0	0	0	1	5250	1136	40	1		1	ESCO1	18	19116141	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10		19116141	58961107	90	42222											
FAM69C	125704	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	18	72114400	72114400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	72114400	G	T	72114400	3	4	691	1	0	0	0	0	1	0	0	0	5611	1203	42	4	954	4	FAM69C	18	72114400	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	52998259	72114400	5962848	91	42223											
ATP9B	374868	broad.mit.edu	37	18	77090010	77090010	+	Splice_Site	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	77090010	A	G	77090010	5	3	691	1	0	0	0	0	0	0	1	0	1199	434	15	3	2000	3	ATP9B	18	77090010	Splice_Site	SNP	A	TCGA-KM-8476-01A-11D-2310-10	4975610	77090010	987238	92	42224											
ICAM1	3383	mdanderson.org;bcgsc.ca	37	19	10395799	10395799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	C	10395799	T	C	10395799	3	2	691	1	0	0	0	0	1	0	0	0	7486	1638	57	3	1461	3	ICAM1	19	10395799	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10		10395799	48733184	93	42225											
QTRT1	81890	broad.mit.edu	37	19	10823283	10823283	+	Silent	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	10823283	C	T	10823283	2	4	691	1	0	0	0	0	0	0	0	1	12898	776	27	1		1	QTRT1	19	10823283	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	427484	10823283	48305700	94	42226											
ZNF701	55762	broad.mit.edu;mdanderson.org	37	19	53086657	53086657	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	53086657	C	T	53086657	4	4	691	1	0	0	0	0	0	1	0	0	18117	876	31	1	1557	1	ZNF701	19	53086657	Nonsense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	42263374	53086657	6042326	95	42227											
LILRA3	11026	broad.mit.edu	37	19	54803112	54803112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	54803112	G	A	54803112	3	1	691	1	0	0	0	0	1	0	0	0	8793	1232	43	2	770	2	LILRA3	19	54803112	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	1716455	54803112	4325871	96	42228											
MYH7B	57644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	33575696	33575696	+	Silent	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	33575696	C	T	33575696	2	4	691	1	0	0	0	0	0	0	0	1	10047	874	31	1		1	MYH7B	20	33575696	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10		33575696	29449824	97	42229											
B3GALT5	10317	ucsc.edu	37	21	41033240	41033240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	41033240	A	G	41033240	3	3	691	1	0	0	0	0	1	0	0	0	1250	63	3	3	756	3	B3GALT5	21	41033240	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10		41033240	7096655	98	42230											
HIC2	23119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	21800335	21800335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	21800335	C	G	21800335	3	3	691	1	0	0	0	0	1	0	0	0	7109	681	24	4	1157	4	HIC2	22	21800335	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		21800335	29504231	99	42231											
ZNF280B	140883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	22	22842485	22842485	+	Silent	SNP	C	C	T	rs141102079		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	22842485	C	T	22842485	2	4	691	1	0	0	0	0	0	0	0	1	17827	639	23	1		1	ZNF280B	22	22842485	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	1042150	22842485	28462081	100	42232											
HPS4	89781	broad.mit.edu	37	22	26860415	26860415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	G	26860415	A	G	26860415	3	3	691	1	0	0	0	0	1	0	0	0	7348	43	2	3	961	3	HPS4	22	26860415	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	4017930	26860415	24444151	101	42233											
MGAT3	4248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	22	39884300	39884300	+	Silent	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	39884300	C	T	39884300	2	4	691	1	0	0	0	0	0	0	0	1	9551	535	19	1		1	MGAT3	22	39884300	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	13023885	39884300	11420266	102	42234											
RBM3	5935	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	48434802	48434802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	T	48434802	C	T	48434802	3	4	691	1	0	0	0	0	1	0	0	0	13142	913	32	2	321	2	RBM3	23	48434802	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		48434802	106835758	103	42235											
ZCCHC5	203430	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	77913571	77913571	+	Missense_Mutation	SNP	G	G	A	rs144237768		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	77913571	G	A	77913571	3	1	691	1	0	0	0	0	1	0	0	0	17603	1087	38	1	1084	1	ZCCHC5	23	77913571	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	29478769	77913571	77356989	104	42236											
MAGEC1	9947	mdanderson.org	37	X	140994352	140994352	+	Missense_Mutation	SNP	C	C	A	rs113701062	byfrequency	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245	A	140994352	C	A	140994352	3	1	691	1	0	0	0	0	1	0	0	0	9187	913	32	4	1168	4	MAGEC1	23	140994352	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	63080781	140994352	14276208	105	42237											
HNRNPCL1	343069	bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	C	12907358	T	C	12907358	3	2	692	1	0	0	0	0	1	0	0	0	7270	1580	55	3	98	3	HNRNPCL1	1	12907358	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10		12907358	236343263	1	42238											
RBMXL1	494115	mdanderson.org	37	1	89449135	89449135	+	Silent	SNP	T	T	C	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	C	89449135	T	C	89449135	2	2	692	1	0	0	0	0	0	0	0	1	13166	1538	54	3		3	RBMXL1	1	89449135	Silent	SNP	T	TCGA-KM-8477-01A-11D-2310-10	76541777	89449135	159801486	2	42239											
CHIA	27159	broad.mit.edu;bcgsc.ca	37	1	111857960	111857960	+	Missense_Mutation	SNP	G	G	A	rs41445048	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	111857960	G	A	111857960	3	1	692	1	0	0	0	0	1	0	0	0	3344	1087	38	1	401	1	CHIA	1	111857960	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	22408825	111857960	137392661	3	42240											
NOTCH2	4853	broad.mit.edu	37	1	120539668	120539668	+	Missense_Mutation	SNP	T	T	A	rs200464440		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	120539668	T	A	120539668	3	1	692	1	0	0	0	0	1	0	0	0	10555	1696	59	5	6836	5	NOTCH2	1	120539668	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10	8681708	120539668	128710953	4	42241											
POLR3C	10623	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	145594109	145594109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	145594109	G	T	145594109	3	4	692	1	0	0	0	0	1	0	0	0	12237	1386	48	4	159	4	POLR3C	1	145594109	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	25054441	145594109	103656512	5	42242											
FLG	2312	mdanderson.org	37	1	152280597	152280597	+	Silent	SNP	A	A	G	rs3126077	bycluster;byfrequency;by2hit2allele	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	152280597	A	G	152280597	2	3	692	1	0	0	0	0	0	0	0	1	5929	98	4	3		3	FLG	1	152280597	Silent	SNP	A	TCGA-KM-8477-01A-11D-2310-10	6686488	152280597	96970024	6	42243											
BIRC6	57448	ucsc.edu	37	2	32617105	32617105	+	Splice_Site	SNP	A	A	G	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	32617105	A	G	32617105	5	3	692	1	0	0	0	0	0	0	1	0	1438	434	15	3	856	3	BIRC6	2	32617105	Splice_Site	SNP	A	TCGA-KM-8477-01A-11D-2310-10		32617105	210582268	7	42244											
DNAH6	1768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	84928427	84928427	+	Silent	SNP	G	G	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	84928427	G	T	84928427	2	4	692	1	0	0	0	0	0	0	0	1	4607	1364	48	4		4	DNAH6	2	84928427	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	52311322	84928427	158270946	8	42245											
LCT	3938	broad.mit.edu	37	2	136555689	136555689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	136555689	G	A	136555689	3	1	692	1	0	0	0	0	1	0	0	0	8700	1319	46	2	917	2	LCT	2	136555689	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	51627262	136555689	106643684	9	42246											
FZD7	8324	broad.mit.edu	37	2	202901005	202901005	+	Silent	SNP	C	C	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	202901005	C	T	202901005	2	4	692	1	0	0	0	0	0	0	0	1	6142	784	28	2		2	FZD7	2	202901005	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10	66345316	202901005	40298368	10	42247											
PAK2	5062	mdanderson.org	37	3	196529982	196529982	+	Missense_Mutation	SNP	A	A	G	rs78043821	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	196529982	A	G	196529982	3	3	692	1	0	0	0	0	1	0	0	0	11408	72	3	3	393	3	PAK2	3	196529982	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10		196529982	1492448	11	42248											
WDFY3	23001	broad.mit.edu	37	4	85630103	85630103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	85630103	A	G	85630103	3	3	692	1	0	0	0	0	1	0	0	0	17282	391	14	3	2468	3	WDFY3	4	85630103	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10		85630103	105524173	12	42249											
CEP72	55722	hgsc.bcm.edu	37	5	612536	612536	+	Silent	SNP	C	C	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	612536	C	T	612536	2	4	692	1	0	0	0	0	0	0	0	1	3262	784	28	2		2	CEP72	5	612536	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10		612536	180302724	13	42250											
RXFP3	51289	broad.mit.edu	37	5	33937368	33937368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	33937368	G	A	33937368	3	1	692	1	0	0	0	0	1	0	0	0	13774	1319	46	2	525	2	RXFP3	5	33937368	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	33324832	33937368	146977892	14	42251											
LRRTM2	26045	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	138209476	138209476	+	Silent	SNP	T	T	G	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	138209476	T	G	138209476	2	3	692	1	0	0	0	0	0	0	0	1	9047	1509	53	5		5	LRRTM2	5	138209476	Silent	SNP	T	TCGA-KM-8477-01A-11D-2310-10	104272108	138209476	42705784	15	42252											
GTF2H4	2968	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	6	30879492	30879492	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	30879492	T	A	30879492	3	1	692	1	0	0	0	0	1	0	0	0	6872	1580	55	5	803	5	GTF2H4	6	30879492	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10		30879492	140235575	16	42253											
DDX56	54606	broad.mit.edu	37	7	44611269	44611269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	44611269	A	G	44611269	3	3	692	1	0	0	0	0	1	0	0	0	4376	188	7	3	967	3	DDX56	7	44611269	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10		44611269	114527394	17	42254											
ASB4	51666	broad.mit.edu	37	7	95166910	95166910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	C	95166910	T	C	95166910	3	2	692	1	0	0	0	0	1	0	0	0	1025	1609	56	3	1210	3	ASB4	7	95166910	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10	50555641	95166910	63971753	18	42255											
AHCYL2	23382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	129037098	129037098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	129037098	G	T	129037098	3	4	692	1	0	0	0	0	1	0	0	0	411	1020	36	4	896	4	AHCYL2	7	129037098	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	33870188	129037098	30101565	19	42256											
EBF2	64641	broad.mit.edu	37	8	25744302	25744302	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	25744302	G	T	25744302	4	4	692	1	0	0	0	0	0	1	0	0	4883	1311	46	4	777	4	EBF2	8	25744302	Nonsense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		25744302	120619720	20	42257											
RDH10	157506	broad.mit.edu	37	8	74235228	74235228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	74235228	G	A	74235228	3	1	692	1	0	0	0	0	1	0	0	0	13202	942	33	2	1005	2	RDH10	8	74235228	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	48490926	74235228	72128794	21	42258											
NCALD	83988	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	8	102705065	102705065	+	Silent	SNP	C	C	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	102705065	C	T	102705065	2	4	692	1	0	0	0	0	0	0	0	1	10208	912	32	2		2	NCALD	8	102705065	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10	28469837	102705065	43658957	22	42259											
DPYS	1807	mdanderson.org	37	8	105478933	105478933	+	Silent	SNP	G	G	A	rs2298840	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	105478933	G	A	105478933	2	1	692	1	0	0	0	0	0	0	0	1	4748	1165	41	2		2	DPYS	8	105478933	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	2773868	105478933	40885089	23	42260											
PRUNE2	158471	hgsc.bcm.edu	37	9	79324154	79324154	+	Silent	SNP	A	A	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	79324154	A	T	79324154	2	4	692	1	0	0	0	0	0	0	0	1	12651	291	11	5		5	PRUNE2	9	79324154	Silent	SNP	A	TCGA-KM-8477-01A-11D-2310-10		79324154	61889277	24	42261											
TLE4	7091	hgsc.bcm.edu	37	9	82191095	82191095	+	Splice_Site	DEL	A	A	-	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	-	82191095	A	-	82191095	8	5	692	1	0	1	0	1	0	0	1	0	15953	377	13	0		0	TLE4	9	82191095	Splice_Site	DEL	A	TCGA-KM-8477-01A-11D-2310-10	2866941	82191095	59022336	25	42262											
PTPN3	5774	broad.mit.edu	37	9	112219611	112219612	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	-	112219612	AT	-	112219611	7	5	692	1	0	1	0	1	0	0	0	0	12802	108	4	0	2630	0	PTPN3	9	112219611	Frame_Shift_Del	DEL	AT	TCGA-KM-8477-01A-11D-2310-10	30028516	112219611	28993820	26	42263	568	2									
PTPN3	5774	bcgsc.ca	37	9	112219612	112219613	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	-	112219613	AT	-	112219612	7	5	692	1	0	1	0	1	0	0	0	0	12802	1406	49	0	2631	0	PTPN3	9	112219612	Frame_Shift_Del	DEL	AT	TCGA-KM-8477-01A-11D-2310-10	1	112219612	28993819	27	42264	568	2									
C10orf71	118461	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	50533936	50533936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	50533936	G	A	50533936	3	1	692	1	0	0	0	0	1	0	0	0	1616	1087	38	1	3348	1	C10orf71	10	50533936	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		50533936	85000811	28	42265											
MYPN	84665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	69881358	69881358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	69881358	G	A	69881358	3	1	692	1	0	0	0	0	1	0	0	0	10105	1117	39	1	165	1	MYPN	10	69881358	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	19347422	69881358	65653389	29	42266											
TET1	80312	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	70426913	70426913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	70426913	A	G	70426913	3	3	692	1	0	0	0	0	1	0	0	0	15781	217	8	3	4595	3	TET1	10	70426913	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10	545555	70426913	65107834	30	42267											
SEC24C	9632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	75519464	75519464	+	Silent	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	75519464	G	A	75519464	2	1	692	1	0	0	0	0	0	0	0	1	14009	1045	37	1		1	SEC24C	10	75519464	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	5092551	75519464	60015283	31	42268											
PTPRE	5791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	129866455	129866455	+	Silent	SNP	C	C	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	129866455	C	T	129866455	2	4	692	1	0	0	0	0	0	0	0	1	12813	883	31	1		1	PTPRE	10	129866455	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10	54346991	129866455	5668292	32	42269											
SMPD1	6609	ucsc.edu	37	11	6411941	6411941	+	Missense_Mutation	SNP	C	C	T	rs78250081		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	6411941	C	T	6411941	3	4	692	1	0	0	0	0	1	0	0	0	14817	768	27	1	115	1	SMPD1	11	6411941	Missense_Mutation	SNP	C	TCGA-KM-8477-01A-11D-2310-10		6411941	128594575	33	42270											
OR5F1	338674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	55762021	55762021	+	Silent	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	55762021	G	A	55762021	2	1	692	1	0	0	0	0	0	0	0	1	11165	929	33	2		2	OR5F1	11	55762021	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	49350080	55762021	79244495	34	42271											
FOLR2	2350	hgsc.bcm.edu;mdanderson.org	37	11	71932761	71932761	+	Silent	SNP	C	C	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	71932761	C	T	71932761	2	4	692	1	0	0	0	0	0	0	0	1	5989	842	30	2		2	FOLR2	11	71932761	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10	16170740	71932761	63073755	35	42272											
SORL1	6653	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	121444978	121444978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	C	121444978	G	C	121444978	3	2	692	1	0	0	0	0	1	0	0	0	14947	1020	36	4	3460	4	SORL1	11	121444978	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	49512217	121444978	13561538	36	42273											
WNT5B	81029	broad.mit.edu;bcgsc.ca	37	12	1742019	1742019	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	1742019	G	A	1742019	4	1	692	1	0	0	0	0	0	1	0	0	17404	1183	41	2	282	2	WNT5B	12	1742019	Nonsense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		1742019	132109876	37	42274											
VAMP1	6843	broad.mit.edu	37	12	6574085	6574085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	6574085	A	G	6574085	3	3	692	1	0	0	0	0	1	0	0	0	17124	333	12	3	82	3	VAMP1	12	6574085	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10	4832066	6574085	127277810	38	42275											
SOS2	6655	broad.mit.edu;mdanderson.org;bcgsc.ca	37	14	50619875	50619875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	50619875	G	A	50619875	3	1	692	1	0	0	0	0	1	0	0	0	14950	1057	37	1	1968	1	SOS2	14	50619875	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		50619875	56729665	39	42276											
HERC2	8924	mdanderson.org	37	15	28482158	28482158	+	Silent	SNP	C	C	G	rs3881419	by1000genomes	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	28482158	C	G	28482158	2	3	692	1	0	0	0	0	0	0	0	1	7065	523	19	4		4	HERC2	15	28482158	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10		28482158	74049234	40	42277											
UNC13C	440279	broad.mit.edu	37	15	54557616	54557616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	C	54557616	T	C	54557616	3	2	692	1	0	0	0	0	1	0	0	0	16998	1725	60	3	3770	3	UNC13C	15	54557616	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10	26075458	54557616	47973776	41	42278											
HBQ1	3049	mdanderson.org	37	16	230578	230578	+	Silent	SNP	A	A	G	rs11863726		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	230578	A	G	230578	2	3	692	1	0	0	0	0	0	0	0	1	6993	11	1	3		3	HBQ1	16	230578	Silent	SNP	A	TCGA-KM-8477-01A-11D-2310-10		230578	90124175	42	42279											
CRAMP1L	57585	ucsc.edu	37	16	1706144	1706144	+	Silent	SNP	A	A	G	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	1706144	A	G	1706144	2	3	692	1	0	0	0	0	0	0	0	1	3848	98	4	3		3	CRAMP1L	16	1706144	Silent	SNP	A	TCGA-KM-8477-01A-11D-2310-10	1475566	1706144	88648609	43	42280											
SRRM2	23524	mdanderson.org	37	16	2813441	2813441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	2813441	G	T	2813441	3	4	692	1	0	0	0	0	1	0	0	0	15181	1232	43	4	2950	4	SRRM2	16	2813441	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	1107297	2813441	87541312	44	42281											
MLLT6	4302	broad.mit.edu	37	17	36873792	36873793	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	C	36873793	-	C	36873792	7	5	692	1	0	1	1	0	0	0	0	0	9637	1203	42	0	1801	0	MLLT6	17	36873792	Frame_Shift_Ins	INS	-	TCGA-KM-8477-01A-11D-2310-10		36873792	44321418	45	42282											
ZNF136	7695	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	12296934	12296934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	C	12296934	A	C	12296934	3	2	692	1	0	0	0	0	1	0	0	0	17738	15	1	5	146	5	ZNF136	19	12296934	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10		12296934	46832049	46	42283											
F2RL3	9002	mdanderson.org	37	19	17000632	17000632	+	Missense_Mutation	SNP	G	G	A	rs773902	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	17000632	G	A	17000632	3	1	692	1	0	0	0	0	1	0	0	0	5348	1203	42	2	364	2	F2RL3	19	17000632	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	4703698	17000632	42128351	47	42284											
SLC7A10	56301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	33702229	33702229	+	Silent	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	33702229	G	A	33702229	2	1	692	1	0	0	0	0	0	0	0	1	14706	1049	37	1		1	SLC7A10	19	33702229	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	16701597	33702229	25426754	48	42285											
CEACAM5	1048	broad.mit.edu	37	19	42219764	42219764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	G	42219764	A	G	42219764	3	3	692	1	0	0	0	0	1	0	0	0	3197	130	5	3	913	3	CEACAM5	19	42219764	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10	8517535	42219764	16909219	49	42286											
PAX1	5075	mdanderson.org	37	20	21695347	21695347	+	Missense_Mutation	SNP	C	C	T	rs17861061	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	21695347	C	T	21695347	3	4	692	1	0	0	0	0	1	0	0	0	11485	594	21	2	1529	2	PAX1	20	21695347	Missense_Mutation	SNP	C	TCGA-KM-8477-01A-11D-2310-10		21695347	41330173	50	42287											
CTNNBL1	56259	broad.mit.edu;hgsc.bcm.edu	37	20	36470751	36470752	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	36470752	-	A	36470751	7	5	692	1	0	1	1	0	0	0	0	0	4020	1522	53	0	1372	0	CTNNBL1	20	36470751	Frame_Shift_Ins	INS	-	TCGA-KM-8477-01A-11D-2310-10	14775404	36470751	26554769	51	42288	569	2									
CTNNBL1	56259	bcgsc.ca	37	20	36470752	36470753	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	36470753	-	A	36470752	7	5	692	1	0	1	1	0	0	0	0	0	4020	349	13	0	1373	0	CTNNBL1	20	36470752	Frame_Shift_Ins	INS	-	TCGA-KM-8477-01A-11D-2310-10	1	36470752	26554768	52	42289	569	2									
NTSR1	4923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	61386087	61386087	+	Silent	SNP	G	G	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	61386087	G	T	61386087	2	4	692	1	0	0	0	0	0	0	0	1	10717	1277	45	4		4	NTSR1	20	61386087	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	24915335	61386087	1639433	53	42290											
USP9X	8239	broad.mit.edu	37	X	41010226	41010226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	T	41010226	G	T	41010226	3	4	692	1	0	0	0	0	1	0	0	0	17102	1087	38	4	1725	4	USP9X	23	41010226	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		41010226	114260334	54	42291											
RBM10	8241	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	47041266	47041266	+	Splice_Site	SNP	G	G	A	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282	A	47041266	G	A	47041266	5	1	692	1	0	0	0	0	0	0	1	0	13124	1159	40	1	1748	1	RBM10	23	47041266	Splice_Site	SNP	G	TCGA-KM-8477-01A-11D-2310-10	6031040	47041266	108229294	55	42292											
BMP8A	353500	broad.mit.edu	37	1	39987055	39987055	+	Silent	SNP	C	C	T	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	39987055	C	T	39987055	2	4	693	1	0	0	0	0	0	0	0	1	1466	767	27	1		1	BMP8A	1	39987055	Silent	SNP	C	TCGA-KM-8639-01A-11D-2397-10		39987055	209263566	1	42293											
MYBPHL	343263	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	109840820	109840820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	109840820	C	A	109840820	3	1	693	1	0	0	0	0	1	0	0	0	10022	855	30	4	887	4	MYBPHL	1	109840820	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	69853765	109840820	139409801	2	42294											
GSTM5	2949	mdanderson.org	37	1	110257835	110257836	+	Silent	DNP	CT	CT	TC	rs61744262	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	TC	110257836	CT	TC	110257835	2	4	693	1	0	0	0	0	0	0	0	1	6848	564	20	2		2	GSTM5	1	110257835	Silent	DNP	CT	TCGA-KM-8639-01A-11D-2397-10	417015	110257835	138992786	3	42295											
RNPEP	6051	broad.mit.edu	37	1	201969125	201969125	+	Missense_Mutation	SNP	C	C	T	rs140770038	alternate_allele	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	201969125	C	T	201969125	3	4	693	1	0	0	0	0	1	0	0	0	13522	652	23	1	1208	1	RNPEP	1	201969125	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	91711290	201969125	47281496	4	42296											
OBSCN	84033	broad.mit.edu	37	1	228471449	228471449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	228471449	C	T	228471449	3	4	693	1	0	0	0	0	1	0	0	0	10819	643	23	1	9109	1	OBSCN	1	228471449	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	26502324	228471449	20779172	5	42297											
SLC4A5	57835	broad.mit.edu;mdanderson.org	37	2	74492256	74492256	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	74492256	G	C	74492256	3	2	693	1	0	0	0	0	1	0	0	0	14670	1368	48	4	2968	4	SLC4A5	2	74492256	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		74492256	168707117	6	42298											
PARD3B	117583	broad.mit.edu;hgsc.bcm.edu	37	2	206110537	206110538	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	206110538	-	A	206110537	7	5	693	1	0	1	1	0	0	0	0	0	11451	479	17	0	2238	0	PARD3B	2	206110537	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	131618281	206110537	37088836	7	42299	570	2									
PARD3B	117583	bcgsc.ca	37	2	206110538	206110539	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	206110539	-	A	206110538	7	5	693	1	0	1	1	0	0	0	0	0	11451	130	5	0	2239	0	PARD3B	2	206110538	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	1	206110538	37088835	8	42300	570	2									
TRIP12	9320	broad.mit.edu	37	2	230650546	230650546	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	230650546	A	C	230650546	3	2	693	1	0	0	0	0	1	0	0	0	16568	188	7	5	1218	5	TRIP12	2	230650546	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	24540008	230650546	12548827	9	42301											
NCL	4691	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	232325533	232325533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	232325533	T	C	232325533	3	2	693	1	0	0	0	0	1	0	0	0	10233	1792	62	3	1518	3	NCL	2	232325533	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	1674987	232325533	10873840	10	42302											
DNAJC13	23317	bcgsc.ca	37	3	132226100	132226100	+	Missense_Mutation	SNP	A	A	G	rs79953286	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	132226100	A	G	132226100	3	3	693	1	0	0	0	0	1	0	0	0	4634	449	16	3	5184	3	DNAJC13	3	132226100	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10		132226100	65796330	11	42303											
OTOL1	131149	broad.mit.edu	37	3	161220991	161220991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	161220991	T	G	161220991	3	3	693	1	0	0	0	0	1	0	0	0	11311	1464	51	5	709	5	OTOL1	3	161220991	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	28994891	161220991	36801439	12	42304											
CAMK2N2	94032	broad.mit.edu	37	3	183977958	183977959	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	183977959	GG	-	183977958	7	5	693	1	0	1	0	1	0	0	0	0	2606	1116	39	0	16	0	CAMK2N2	3	183977958	Frame_Shift_Del	DEL	GG	TCGA-KM-8639-01A-11D-2397-10	22756967	183977958	14044472	13	42305											
ANKRD17	26057	broad.mit.edu;hgsc.bcm.edu	37	4	74012976	74012979	+	Frame_Shift_Del	DEL	TAAC	TAAC	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	TAAC	TAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	74012979	TAAC	-	74012976	7	5	693	1	0	1	0	1	0	0	0	0	646	1763	61	0	6174	0	ANKRD17	4	74012976	Frame_Shift_Del	DEL	TAAC	TCGA-KM-8639-01A-11D-2397-10		74012976	117141300	14	42306	571	2									
ANKRD17	26057	bcgsc.ca	37	4	74012977	74012980	+	Frame_Shift_Del	DEL	TAAC	TAAC	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	TAAC	TAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	74012980	TAAC	-	74012977	7	5	693	1	0	1	0	1	0	0	0	0	646	349	13	0	6175	0	ANKRD17	4	74012977	Frame_Shift_Del	DEL	TAAC	TCGA-KM-8639-01A-11D-2397-10	1	74012977	117141299	15	42307	571	2									
ABCE1	6059	mdanderson.org;bcgsc.ca	37	4	146044692	146044692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	146044692	A	G	146044692	3	3	693	1	0	0	0	0	1	0	0	0	64	449	16	3	1638	3	ABCE1	4	146044692	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	72031715	146044692	45109584	16	42308											
CLPTM1L	81037	hgsc.bcm.edu	37	5	1344897	1344897	+	Silent	SNP	C	C	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	1344897	C	A	1344897	2	1	693	1	0	0	0	0	0	0	0	1	3557	581	21	4		4	CLPTM1L	5	1344897	Silent	SNP	C	TCGA-KM-8639-01A-11D-2397-10		1344897	179570363	17	42309											
NUDT12	83594	hgsc.bcm.edu	37	5	102891744	102891744	+	Silent	SNP	G	G	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	102891744	G	A	102891744	2	1	693	1	0	0	0	0	0	0	0	1	10735	1195	42	2		2	NUDT12	5	102891744	Silent	SNP	G	TCGA-KM-8639-01A-11D-2397-10	101546847	102891744	78023516	18	42310											
FER	2241	mdanderson.org	37	5	108133967	108133967	+	Silent	SNP	A	A	G	rs2229085	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	108133967	A	G	108133967	2	3	693	1	0	0	0	0	0	0	0	1	5820	349	13	3		3	FER	5	108133967	Silent	SNP	A	TCGA-KM-8639-01A-11D-2397-10	5242223	108133967	72781293	19	42311											
ADAM19	8728	mdanderson.org	37	5	156997987	156997987	+	Silent	SNP	T	T	C	rs200503236	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	156997987	T	C	156997987	2	2	693	1	0	0	0	0	0	0	0	1	240	1565	54	3		3	ADAM19	5	156997987	Silent	SNP	T	TCGA-KM-8639-01A-11D-2397-10	48864020	156997987	23917273	20	42312											
ADAMTS2	9509	broad.mit.edu	37	5	178634608	178634608	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	178634608	T	A	178634608	3	1	693	1	0	0	0	0	1	0	0	0	265	1638	57	5	2989	5	ADAMTS2	5	178634608	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	21636621	178634608	2280652	21	42313											
HLA-DRB5	3127	mdanderson.org	37	6	32487353	32487353	+	Missense_Mutation	SNP	T	T	C	rs114293611	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	32487353	T	C	32487353	3	2	693	1	0	0	0	0	1	0	0	0	7216	1493	52	3	370	3	HLA-DRB5	6	32487353	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10		32487353	138627714	22	42314											
TREML2	79865	mdanderson.org	37	6	41165977	41165977	+	Silent	SNP	A	A	G	rs41273770	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	41165977	A	G	41165977	2	3	693	1	0	0	0	0	0	0	0	1	16485	214	8	3		3	TREML2	6	41165977	Silent	SNP	A	TCGA-KM-8639-01A-11D-2397-10	8678624	41165977	129949090	23	42315											
INTS1	26173	bcgsc.ca	37	7	1513878	1513878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	1513878	G	T	1513878	3	4	693	1	0	0	0	0	1	0	0	0	7782	1328	46	4	849	4	INTS1	7	1513878	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		1513878	157624785	24	42316											
CDK13	8621	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	40132819	40132819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	40132819	C	G	40132819	3	3	693	1	0	0	0	0	1	0	0	0	3131	681	24	4	3721	4	CDK13	7	40132819	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	38618941	40132819	119005844	25	42317											
CNOT4	4850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	135079031	135079031	+	Silent	SNP	T	T	C	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	135079031	T	C	135079031	2	2	693	1	0	0	0	0	0	0	0	1	3623	1722	60	3		3	CNOT4	7	135079031	Silent	SNP	T	TCGA-KM-8639-01A-11D-2397-10	94946212	135079031	24059632	26	42318											
ANXA13	312	bcgsc.ca	37	8	124710664	124710664	+	Missense_Mutation	SNP	C	C	T	rs6995099	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	124710664	C	T	124710664	3	4	693	1	0	0	0	0	1	0	0	0	717	536	19	1	660	1	ANXA13	8	124710664	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10		124710664	21653358	27	42319											
RMI1	80010	bcgsc.ca	37	9	86616443	86616443	+	Missense_Mutation	SNP	T	T	C	rs200956667		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	86616443	T	C	86616443	3	2	693	1	0	0	0	0	1	0	0	0	13408	1764	61	3	544	3	RMI1	9	86616443	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10		86616443	54596988	28	42320											
TSC1	7248	broad.mit.edu;hgsc.bcm.edu	37	9	135779084	135779093	+	Frame_Shift_Del	DEL	CGGAGGAGCC	CGGAGGAGCC	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CGGAGGAGCC	CGGAGGAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	135779093	CGGAGGAGCC	-	135779084	7	5	693	1	0	1	0	1	0	0	0	0	16617	768	27	0	1360	0	TSC1	9	135779084	Frame_Shift_Del	DEL	CGGAGGAGCC	TCGA-KM-8639-01A-11D-2397-10	49162641	135779084	5434347	29	42321	572	2									
TSC1	7248	bcgsc.ca	37	9	135779085	135779094	+	Frame_Shift_Del	DEL	CGGAGGAGCC	CGGAGGAGCC	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CGGAGGAGCC	CGGAGGAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	135779094	CGGAGGAGCC	-	135779085	7	5	693	1	0	1	0	1	0	0	0	0	16617	1116	39	0	1361	0	TSC1	9	135779085	Frame_Shift_Del	DEL	CGGAGGAGCC	TCGA-KM-8639-01A-11D-2397-10	1	135779085	5434346	30	42322	572	2									
GPR158	57512	broad.mit.edu;mdanderson.org;bcgsc.ca	37	10	25464834	25464834	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	25464834	G	A	25464834	4	1	693	1	0	0	0	0	0	1	0	0	6670	1357	47	2	487	2	GPR158	10	25464834	Nonsense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		25464834	110069913	31	42323											
ZNF33A	7581	bcgsc.ca	37	10	38344700	38344700	+	Missense_Mutation	SNP	C	C	G	rs2505232	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	38344700	C	G	38344700	3	3	693	1	0	0	0	0	1	0	0	0	17866	711	25	4	1662	4	ZNF33A	10	38344700	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	12879866	38344700	97190047	32	42324											
SEC23IP	11196	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	121652313	121652313	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	121652313	A	C	121652313	3	2	693	1	0	0	0	0	1	0	0	0	14006	362	13	5	21	5	SEC23IP	10	121652313	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	83307613	121652313	13882434	33	42325											
TRIM22	10346	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	5717467	5717467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	5717467	A	G	5717467	3	3	693	1	0	0	0	0	1	0	0	0	16508	333	12	3	7	3	TRIM22	11	5717467	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10		5717467	129289049	34	42326											
PACS1	55690	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66008957	66008957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	66008957	A	G	66008957	3	3	693	1	0	0	0	0	1	0	0	0	11379	159	6	3	2575	3	PACS1	11	66008957	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	60291490	66008957	68997559	35	42327											
BIRC3	330	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	102206944	102206944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	102206944	T	G	102206944	3	3	693	1	0	0	0	0	1	0	0	0	1436	1490	52	5	1594	5	BIRC3	11	102206944	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	36197987	102206944	32799572	36	42328											
KCNH5	27133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	14	63174364	63174364	+	Silent	SNP	C	C	T	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	63174364	C	T	63174364	2	4	693	1	0	0	0	0	0	0	0	1	8042	639	23	1		1	KCNH5	14	63174364	Silent	SNP	C	TCGA-KM-8639-01A-11D-2397-10		63174364	44175176	37	42329											
VPS18	57617	bcgsc.ca	37	15	41191887	41191887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	41191887	G	T	41191887	3	4	693	1	0	0	0	0	1	0	0	0	17206	1348	47	4	885	4	VPS18	15	41191887	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		41191887	61339505	38	42330											
SPTBN5	51332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	42143342	42143342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	42143342	C	T	42143342	3	4	693	1	0	0	0	0	1	0	0	0	15134	797	28	2	290	2	SPTBN5	15	42143342	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	951455	42143342	60388050	39	42331											
CYP1A2	1544	ucsc.edu	37	15	75047426	75047426	+	Silent	SNP	C	C	T	rs2470890	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	75047426	C	T	75047426	2	4	693	1	0	0	0	0	0	0	0	1	4152	564	20	2		2	CYP1A2	15	75047426	Silent	SNP	C	TCGA-KM-8639-01A-11D-2397-10	32904084	75047426	27483966	40	42332											
AMDHD2	51005	broad.mit.edu	37	16	2570776	2570776	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	2570776	T	-	2570776	7	5	693	1	0	1	0	1	0	0	0	0	568	1432	50	0	96	0	AMDHD2	16	2570776	Frame_Shift_Del	DEL	T	TCGA-KM-8639-01A-11D-2397-10		2570776	87783977	41	42333	573	2									
AMDHD2	51005	broad.mit.edu	37	16	2570778	2570778	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	2570778	T	-	2570778	7	5	693	1	0	1	0	1	0	0	0	0	568	1580	55	0	98	0	AMDHD2	16	2570778	Frame_Shift_Del	DEL	T	TCGA-KM-8639-01A-11D-2397-10	2	2570778	87783975	42	42334	573	2									
DNAJA2	10294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	46991077	46991077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	46991077	G	A	46991077	3	1	693	1	0	0	0	0	1	0	0	0	4614	1377	48	2	139	2	DNAJA2	16	46991077	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10	44420299	46991077	43363676	43	42335											
BCAR1	9564	broad.mit.edu	37	16	75263529	75263530	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	75263530	CT	-	75263529	7	5	693	1	0	1	0	1	0	0	0	0	1348	680	24	0	123	0	BCAR1	16	75263529	Frame_Shift_Del	DEL	CT	TCGA-KM-8639-01A-11D-2397-10	28272452	75263529	15091224	44	42336	574	2									
BCAR1	9564	broad.mit.edu	37	16	75263533	75263534	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	T	75263534	-	T	75263533	7	5	693	1	0	1	1	0	0	0	0	0	1348	1261	44	0	127	0	BCAR1	16	75263533	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	4	75263533	15091220	45	42337	574	2									
USP10	9100	mdanderson.org	37	16	84797726	84797726	+	Silent	SNP	G	G	A	rs117002428	byfrequency;by1000genomes	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	84797726	G	A	84797726	2	1	693	1	0	0	0	0	0	0	0	1	17053	1103	39	1		1	USP10	16	84797726	Silent	SNP	G	TCGA-KM-8639-01A-11D-2397-10	9534193	84797726	5557027	46	42338											
CCDC144B	284047	broad.mit.edu	37	17	18454926	18454927	+	RNA	INS	-	-	C	rs201304632		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	18454927	-	C	18454926	6	5	693	0	1	1	1	0	0	0	0	0	2780	1624	56	0		0	CCDC144B	17	18454926	RNA	INS	-	TCGA-KM-8639-01A-11D-2397-10		18454926	62740284	47	42339											
LMNB2	84823	broad.mit.edu	37	19	2434856	2434857	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	2434857	-	A	2434856	7	5	693	1	0	1	1	0	0	0	0	0	8857	768	27	0	979	0	LMNB2	19	2434856	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10		2434856	56694127	48	42340											
TMED1	11018	broad.mit.edu;hgsc.bcm.edu	37	19	10943859	10943865	+	Frame_Shift_Del	DEL	CCAGCCG	CCAGCCG	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CCAGCCG	CCAGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	10943865	CCAGCCG	-	10943859	7	5	693	1	0	1	0	1	0	0	0	0	16014	864	30	0	191	0	TMED1	19	10943859	Frame_Shift_Del	DEL	CCAGCCG	TCGA-KM-8639-01A-11D-2397-10	8509003	10943859	48185124	49	42341	575	2									
TMED1	11018	bcgsc.ca	37	19	10943860	10943866	+	Frame_Shift_Del	DEL	CCAGCCG	CCAGCCG	-	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CCAGCCG	CCAGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	-	10943866	CCAGCCG	-	10943860	7	5	693	1	0	1	0	1	0	0	0	0	16014	581	21	0	192	0	TMED1	19	10943860	Frame_Shift_Del	DEL	CCAGCCG	TCGA-KM-8639-01A-11D-2397-10	1	10943860	48185123	50	42342	575	2									
ZNF799	90576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	12501695	12501695	+	Missense_Mutation	SNP	C	C	A	rs201843472		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	12501695	C	A	12501695	3	1	693	1	0	0	0	0	1	0	0	0	18178	478	17	4	418	4	ZNF799	19	12501695	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	1557835	12501695	46627288	51	42343											
GIPC1	10755	broad.mit.edu	37	19	14593617	14593618	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	14593618	-	A	14593617	7	5	693	1	0	1	1	0	0	0	0	0	6399	1000	35	0	853	0	GIPC1	19	14593617	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	2091922	14593617	44535366	52	42344											
ZNF101	94039	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	19790063	19790063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	19790063	T	C	19790063	3	2	693	1	0	0	0	0	1	0	0	0	17726	1812	63	3	279	3	ZNF101	19	19790063	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	5196446	19790063	39338920	53	42345											
CEACAM5	1048	mdanderson.org	37	19	42213772	42213772	+	Missense_Mutation	SNP	A	A	G	rs12971352	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	G	42213772	A	G	42213772	3	3	693	1	0	0	0	0	1	0	0	0	3197	449	16	3	244	3	CEACAM5	19	42213772	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	22423709	42213772	16915211	54	42346											
MYH7B	57644	broad.mit.edu;bcgsc.ca	37	20	33577581	33577581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	33577581	G	A	33577581	3	1	693	1	0	0	0	0	1	0	0	0	10047	1377	48	2	1822	2	MYH7B	20	33577581	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		33577581	29447939	55	42347											
C20orf111	51526	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	42825743	42825743	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	42825743	G	C	42825743	4	2	693	1	0	0	0	0	0	1	0	0	2082	1024	36	4	54	4	C20orf111	20	42825743	Nonsense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10	9248162	42825743	20199777	56	42348											
NCOA3	8202	hgsc.bcm.edu	37	20	46279839	46279839	+	Silent	SNP	G	G	A	rs2664555		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	46279839	G	A	46279839	2	1	693	1	0	0	0	0	0	0	0	1	10237	962	34	2		2	NCOA3	20	46279839	Silent	SNP	G	TCGA-KM-8639-01A-11D-2397-10	3454096	46279839	16745681	57	42349											
MYO18B	84700	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	26351240	26351240	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	26351240	G	C	26351240	3	2	693	1	0	0	0	0	1	0	0	0	10073	1020	36	4	6216	4	MYO18B	22	26351240	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		26351240	24953326	58	42350											
APOL5	80831	mdanderson.org	37	22	36122931	36122931	+	Silent	SNP	G	G	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	36122931	G	A	36122931	2	1	693	1	0	0	0	0	0	0	0	1	809	1103	39	1		1	APOL5	22	36122931	Silent	SNP	G	TCGA-KM-8639-01A-11D-2397-10	9771691	36122931	15181635	59	42351											
NLGN4X	57502	mdanderson.org;bcgsc.ca	37	X	6069116	6069116	+	Missense_Mutation	SNP	T	T	C	rs145307351		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	6069116	T	C	6069116	3	2	693	1	0	0	0	0	1	0	0	0	10471	1493	52	3	2078	3	NLGN4X	23	6069116	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10		6069116	149201444	60	42352											
WWC3	55841	broad.mit.edu	37	X	10085451	10085452	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	10085452	-	A	10085451	7	5	693	1	0	1	1	0	0	0	0	0	17425	893	31	0	1390	0	WWC3	23	10085451	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	4016335	10085451	145185109	61	42353											
TBC1D25	4943	bcgsc.ca	37	X	48418659	48418659	+	Missense_Mutation	SNP	G	G	A	rs235836	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	A	48418659	G	A	48418659	3	1	693	1	0	0	0	0	1	0	0	0	15627	1087	38	1	1385	1	TBC1D25	23	48418659	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10	38333208	48418659	106851901	62	42354											
SATL1	340562	mdanderson.org	37	X	84363716	84363716	+	Missense_Mutation	SNP	G	G	C	rs141330942		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	84363716	G	C	84363716	3	2	693	1	0	0	0	0	1	0	0	0	13868	1261	44	4	1659	4	SATL1	23	84363716	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10	35945057	84363716	70906844	63	42355											
HCFC1	3054	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	153220585	153220585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff	C	153220585	T	C	153220585	3	2	693	1	0	0	0	0	1	0	0	0	6998	1812	63	3	2882	3	HCFC1	23	153220585	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	68856869	153220585	2049975	64	42356											
ESPN	83715	ucsc.edu;bcgsc.ca	37	1	6512010	6512010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	6512010	A	G	6512010	3	3	694	1	0	0	0	0	1	0	0	0	5256	391	14	3	2217	3	ESPN	1	6512010	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10		6512010	242738611	1	42357											
PARS2	25973	ucsc.edu	37	1	55224826	55224826	+	Silent	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	55224826	C	T	55224826	2	4	694	1	0	0	0	0	0	0	0	1	11474	726	26	2		2	PARS2	1	55224826	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	48712816	55224826	194025795	2	42358											
AMPD2	271	broad.mit.edu	37	1	110169839	110169839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	110169839	A	G	110169839	3	3	694	1	0	0	0	0	1	0	0	0	586	304	11	3	990	3	AMPD2	1	110169839	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	54945013	110169839	139080782	3	42359											
PRG4	10216	bcgsc.ca	37	1	186276175	186276175	+	Missense_Mutation	SNP	A	A	G	rs140988757	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	186276175	A	G	186276175	3	3	694	1	0	0	0	0	1	0	0	0	12491	247	9	3	1346	3	PRG4	1	186276175	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	76106336	186276175	62974446	4	42360											
FBXO41	150726	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	73493739	73493739	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	73493739	T	G	73493739	3	3	694	1	0	0	0	0	1	0	0	0	5757	1580	55	5	1694	5	FBXO41	2	73493739	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10		73493739	169705634	5	42361											
TMEM127	55654	broad.mit.edu	37	2	96920609	96920609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	96920609	T	C	96920609	3	2	694	1	0	0	0	0	1	0	0	0	16052	1609	56	3	353	3	TMEM127	2	96920609	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	23426870	96920609	146278764	6	42362											
INPP4A	3631	broad.mit.edu;mdanderson.org	37	2	99163146	99163146	+	Silent	SNP	G	G	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	99163146	G	A	99163146	2	1	694	1	0	0	0	0	0	0	0	1	7759	933	33	2		2	INPP4A	2	99163146	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	2242537	99163146	144036227	7	42363											
FOXD4L1	200350	mdanderson.org	37	2	114257162	114257162	+	Missense_Mutation	SNP	A	A	C	rs201655302		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	114257162	A	C	114257162	3	2	694	1	0	0	0	0	1	0	0	0	6007	391	14	5	331	5	FOXD4L1	2	114257162	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	15094016	114257162	128942211	8	42364											
SCN3A	6328	ucsc.edu	37	2	166032778	166032778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	166032778	T	C	166032778	3	2	694	1	0	0	0	0	1	0	0	0	13931	1754	61	3	6075	3	SCN3A	2	166032778	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	51775616	166032778	77166595	9	42365											
TUBA4A	7277	broad.mit.edu	37	2	220115802	220115802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	220115802	C	T	220115802	3	4	694	1	0	0	0	0	1	0	0	0	16761	893	31	1	731	1	TUBA4A	2	220115802	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	54083024	220115802	23083571	10	42366											
SPEG	10290	hgsc.bcm.edu;ucsc.edu	37	2	220354242	220354242	+	Silent	SNP	G	G	A	rs148685205	by1000genomes	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	220354242	G	A	220354242	2	1	694	1	0	0	0	0	0	0	0	1	15048	1074	38	1		1	SPEG	2	220354242	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	238440	220354242	22845131	11	42367											
SEPT2	4735	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	242283310	242283310	+	Silent	SNP	C	C	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	242283310	C	A	242283310	2	1	694	1	0	0	0	0	0	0	0	1	14077	813	29	4		4	SEPT2	2	242283310	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	21929068	242283310	916063	12	42368											
RFT1	91869	broad.mit.edu	37	3	53139767	53139767	+	Silent	SNP	G	G	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	53139767	G	A	53139767	2	1	694	1	0	0	0	0	0	0	0	1	13270	1165	41	2		2	RFT1	3	53139767	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10		53139767	144882663	13	42369											
ALCAM	214	broad.mit.edu	37	3	105269023	105269023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	105269023	C	T	105269023	3	4	694	1	0	0	0	0	1	0	0	0	487	855	30	2	1473	2	ALCAM	3	105269023	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	52129256	105269023	92753407	14	42370											
PARP14	54625	broad.mit.edu	37	3	122433231	122433231	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	-	122433231	G	-	122433231	7	5	694	1	0	1	0	1	0	0	0	0	11465	1291	45	0	4001	0	PARP14	3	122433231	Frame_Shift_Del	DEL	G	TCGA-KN-8418-01A-11D-2310-10	17164208	122433231	75589199	15	42371											
MUC4	4585	broad.mit.edu	37	3	195507051	195507051	+	Silent	SNP	T	T	C	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	195507051	T	C	195507051	2	2	694	1	0	0	0	0	0	0	0	1	9985	1567	55	3		3	MUC4	3	195507051	Silent	SNP	T	TCGA-KN-8418-01A-11D-2310-10	73073820	195507051	2515379	16	42372	576	2	1	111		4	3	6172	N	T_G_C	5.965582e-05
MUC4	4585	broad.mit.edu	37	3	195507059	195507059	+	Missense_Mutation	SNP	T	T	C	rs76367261		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	195507059	T	C	195507059	3	2	694	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195507059	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	8	195507059	2515371	17	42373	576	2	1	111		4	3	6172	N	T_G_C	5.965582e-05
MUC4	4585	mdanderson.org	37	3	195509180	195509180	+	Missense_Mutation	SNP	C	C	G	rs201718547	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	195509180	C	G	195509180	3	3	694	1	0	0	0	0	1	0	0	0	9985	478	17	4		4	MUC4	3	195509180	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	2121	195509180	2513250	18	42374			1	111		4	3	6172	N	T_G_C	5.965582e-05
MUC4	4585	mdanderson.org	37	3	195513222	195513222	+	Silent	SNP	G	G	A	rs2688554	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	195513222	G	A	195513222	2	1	694	1	0	0	0	0	0	0	0	1	9985	1194	42	2		2	MUC4	3	195513222	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	4042	195513222	2509208	19	42375			1	111		4	3	6172	N	T_G_C	5.965582e-05
PRKAA1	5562	broad.mit.edu	37	5	40775606	40775606	+	Splice_Site	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	40775606	C	T	40775606	5	4	694	1	0	0	0	0	0	0	1	0	12503	695	24	2	1487	2	PRKAA1	5	40775606	Splice_Site	SNP	C	TCGA-KN-8418-01A-11D-2310-10		40775606	140139654	20	42376											
HEATR7B2	133558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	41045851	41045851	+	Silent	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	41045851	C	T	41045851	2	4	694	1	0	0	0	0	0	0	0	1	7042	912	32	2		2	HEATR7B2	5	41045851	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	270245	41045851	139869409	21	42377											
DHFR	1719	broad.mit.edu;mdanderson.org	37	5	79945302	79945302	+	Silent	SNP	G	G	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	79945302	G	A	79945302	2	1	694	1	0	0	0	0	0	0	0	1	4483	933	33	2		2	DHFR	5	79945302	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	38899451	79945302	100969958	22	42378											
ATXN1	6310	broad.mit.edu	37	6	16326646	16326646	+	Silent	SNP	G	G	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	16326646	G	A	16326646	2	1	694	1	0	0	0	0	0	0	0	1	1209	1103	39	1		1	ATXN1	6	16326646	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10		16326646	154788421	23	42379											
HEATR2	54919	mdanderson.org	37	7	814788	814788	+	Missense_Mutation	SNP	G	G	A	rs3922641	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	814788	G	A	814788	3	1	694	1	0	0	0	0	1	0	0	0	7035	1000	35	2	2270	2	HEATR2	7	814788	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10		814788	158323875	24	42380											
SRRM3	222183	broad.mit.edu	37	7	75914932	75914933	+	Splice_Site	INS	-	-	C	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	75914933	-	C	75914932	8	5	694	1	0	1	1	0	0	0	1	0	15182	985	34	0	1787	0	SRRM3	7	75914932	Splice_Site	INS	-	TCGA-KN-8418-01A-11D-2310-10	75100144	75914932	83223731	25	42381											
MLL3	58508	mdanderson.org	37	7	151932990	151932990	+	Missense_Mutation	SNP	C	C	T	rs76844681		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	151932990	C	T	151932990	3	4	694	1	0	0	0	0	1	0	0	0	9629	652	23	1	12230	1	MLL3	7	151932990	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	76018058	151932990	7205673	26	42382											
FAM86B1	85002	mdanderson.org	37	8	12042969	12042969	+	Missense_Mutation	SNP	G	G	A	rs201172089	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	12042969	G	A	12042969	3	1	694	1	0	0	0	0	1	0	0	0	5651	1115	39	1	192	1	FAM86B1	8	12042969	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10		12042969	134321053	27	42383											
FAM86B2	653333	broad.mit.edu;mdanderson.org;bcgsc.ca	37	8	12287958	12287958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	12287958	G	T	12287958	3	4	694	1	0	0	0	0	1	0	0	0	5652	1136	40	4	769	4	FAM86B2	8	12287958	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10	244989	12287958	134076064	28	42384											
NOTCH1	4851	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	139395222	139395222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	139395222	C	T	139395222	3	4	694	1	0	0	0	0	1	0	0	0	10554	768	27	1	1967	1	NOTCH1	9	139395222	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10		139395222	1818209	29	42385											
PITRM1	10531	mdanderson.org	37	10	3208557	3208557	+	Silent	SNP	A	A	G	rs12359035	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	3208557	A	G	3208557	2	3	694	1	0	0	0	0	0	0	0	1	11960	407	15	3		3	PITRM1	10	3208557	Silent	SNP	A	TCGA-KN-8418-01A-11D-2310-10		3208557	132326190	30	42386											
MSRB2	22921	broad.mit.edu	37	10	23399207	23399207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	23399207	G	A	23399207	3	1	694	1	0	0	0	0	1	0	0	0	9895	1001	35	2	266	2	MSRB2	10	23399207	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10	20190650	23399207	112135540	31	42387											
EIF5AL1	143244	mdanderson.org	37	10	81272627	81272627	+	Silent	SNP	G	G	A	rs75496770		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	81272627	G	A	81272627	2	1	694	1	0	0	0	0	0	0	0	1	5045	1132	40	1		1	EIF5AL1	10	81272627	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	57873420	81272627	54262120	32	42388											
INPP5F	22876	ucsc.edu	37	10	121587065	121587065	+	Missense_Mutation	SNP	T	T	C	rs148162878		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	121587065	T	C	121587065	3	2	694	1	0	0	0	0	1	0	0	0	7765	1783	62	3	3250	3	INPP5F	10	121587065	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	40314438	121587065	13947682	33	42389											
BDNF	627	mdanderson.org;bcgsc.ca	37	11	27679447	27679447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	27679447	C	T	27679447	3	4	694	1	0	0	0	0	1	0	0	0	1394	797	28	2	82	2	BDNF	11	27679447	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10		27679447	107327069	34	42390											
MTA2	9219	broad.mit.edu	37	11	62367694	62367694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	62367694	A	G	62367694	3	3	694	1	0	0	0	0	1	0	0	0	9916	72	3	3	1936	3	MTA2	11	62367694	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	34688247	62367694	72638822	35	42391											
BACE1	23621	broad.mit.edu;hgsc.bcm.edu	37	11	117163878	117163880	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	-	117163880	CAG	-	117163878	7	5	694	1	0	1	0	1	0	0	0	0	1281	465	17	0	793	0	BACE1	11	117163878	In_Frame_Del	DEL	CAG	TCGA-KN-8418-01A-11D-2310-10	54796184	117163878	17842638	36	42392	577	2									
BACE1	23621	bcgsc.ca	37	11	117163879	117163881	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	-	117163881	CAG	-	117163879	7	5	694	1	0	1	0	1	0	0	0	0	1281	188	7	0	794	0	BACE1	11	117163879	In_Frame_Del	DEL	CAG	TCGA-KN-8418-01A-11D-2310-10	1	117163879	17842637	37	42393	577	2									
VWF	7450	ucsc.edu	37	12	6181608	6181608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	6181608	T	C	6181608	3	2	694	1	0	0	0	0	1	0	0	0	17258	1565	54	3	7619	3	VWF	12	6181608	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10		6181608	127670287	38	42394											
SPERT	220082	mdanderson.org	37	13	46288145	46288145	+	Missense_Mutation	SNP	A	A	G	rs7317245	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	46288145	A	G	46288145	3	3	694	1	0	0	0	0	1	0	0	0	15051	247	9	3	995	3	SPERT	13	46288145	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10		46288145	68881733	39	42395											
DMXL2	23312	broad.mit.edu	37	15	51787229	51787229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	51787229	A	G	51787229	3	3	694	1	0	0	0	0	1	0	0	0	4597	72	3	3	4438	3	DMXL2	15	51787229	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10		51787229	50744163	40	42396											
HEXA	3073	broad.mit.edu	37	15	72640036	72640037	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	72640037	-	T	72640036	7	5	694	1	0	1	1	0	0	0	0	0	7080	446	16	0	472	0	HEXA	15	72640036	Frame_Shift_Ins	INS	-	TCGA-KN-8418-01A-11D-2310-10	20852807	72640036	29891356	41	42397											
CHTF18	63922	broad.mit.edu	37	16	840180	840180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	840180	T	C	840180	3	2	694	1	0	0	0	0	1	0	0	0	3416	1551	54	3	628	3	CHTF18	16	840180	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10		840180	89514573	42	42398											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7578396	7578396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	7578396	G	T	7578396	3	4	694	1	0	0	0	0	1	0	0	0	16393	1252	44	4	764	4	TP53	17	7578396	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10		7578396	73616814	43	42399											
ATAD5	79915	broad.mit.edu	37	17	29161986	29161986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	29161986	T	C	29161986	3	2	694	1	0	0	0	0	1	0	0	0	1076	1667	58	3	893	3	ATAD5	17	29161986	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	21583590	29161986	52033224	44	42400											
GRB7	2886	ucsc.edu	37	17	37901742	37901742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	G	37901742	A	G	37901742	3	3	694	1	0	0	0	0	1	0	0	0	6766	43	2	3	1198	3	GRB7	17	37901742	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	8739756	37901742	43293468	45	42401											
BPTF	2186	broad.mit.edu;mdanderson.org	37	17	65889530	65889530	+	Silent	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	65889530	C	T	65889530	2	4	694	1	0	0	0	0	0	0	0	1	1497	581	21	2		2	BPTF	17	65889530	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	27987788	65889530	15305680	46	42402											
MUC16	94025	mdanderson.org	37	19	8999395	8999395	+	Missense_Mutation	SNP	T	T	C	rs200813849		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	8999395	T	C	8999395	3	2	694	1	0	0	0	0	1	0	0	0	9980	1812	63	3	2859	3	MUC16	19	8999395	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10		8999395	50129588	47	42403											
MUC16	94025	mdanderson.org	37	19	9002587	9002587	+	Missense_Mutation	SNP	C	C	T	rs201053591		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	9002587	C	T	9002587	3	4	694	1	0	0	0	0	1	0	0	0	9980	652	23	1	3430	1	MUC16	19	9002587	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	3192	9002587	50126396	48	42404											
MUC16	94025	mdanderson.org	37	19	9018539	9018539	+	Silent	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	9018539	C	T	9018539	2	4	694	1	0	0	0	0	0	0	0	1	9980	465	17	2		2	MUC16	19	9018539	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	15952	9018539	50110444	49	42405											
CACNA1A	773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	13340907	13340907	+	Silent	SNP	G	G	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	13340907	G	A	13340907	2	1	694	1	0	0	0	0	0	0	0	1	2540	1252	44	2		2	CACNA1A	19	13340907	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	4322368	13340907	45788076	50	42406											
SPINT2	10653	broad.mit.edu;mdanderson.org	37	19	38782514	38782514	+	Silent	SNP	G	G	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	38782514	G	A	38782514	2	1	694	1	0	0	0	0	0	0	0	1	15081	1281	45	2		2	SPINT2	19	38782514	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	25441607	38782514	20346469	51	42407											
ZNF28	7576	mdanderson.org	37	19	53303332	53303332	+	Missense_Mutation	SNP	C	C	T	rs142442328	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	53303332	C	T	53303332	3	4	694	1	0	0	0	0	1	0	0	0	17825	652	23	1	394	1	ZNF28	19	53303332	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	14520818	53303332	5825651	52	42408											
USP29	57663	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	57641826	57641826	+	Missense_Mutation	SNP	G	G	A	rs141050797	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	57641826	G	A	57641826	3	1	694	1	0	0	0	0	1	0	0	0	17071	1145	40	1	1785	1	USP29	19	57641826	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10	4338494	57641826	1487157	53	42409											
TIAM1	7074	broad.mit.edu;hgsc.bcm.edu	37	21	32624307	32624307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	32624307	G	A	32624307	3	1	694	1	0	0	0	0	1	0	0	0	15902	1115	39	1	3709	1	TIAM1	21	32624307	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10		32624307	15505588	54	42410											
IFNAR1	3454	broad.mit.edu	37	21	34727798	34727798	+	Silent	SNP	T	T	C	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	C	34727798	T	C	34727798	2	2	694	1	0	0	0	0	0	0	0	1	7551	1509	53	3		3	IFNAR1	21	34727798	Silent	SNP	T	TCGA-KN-8418-01A-11D-2310-10	2103491	34727798	13402097	55	42411											
DIP2A	23181	broad.mit.edu	37	21	47970588	47970588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	T	47970588	C	T	47970588	3	4	694	1	0	0	0	0	1	0	0	0	4529	623	22	2	2942	2	DIP2A	21	47970588	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	13242790	47970588	159307	56	42412											
NAGA	4668	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	42456379	42456379	+	Silent	SNP	G	G	A	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96	A	42456379	G	A	42456379	2	1	694	1	0	0	0	0	0	0	0	1	10148	1161	41	2		2	NAGA	22	42456379	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10		42456379	8848187	57	42413											
CTH	1491	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	70897872	70897872	+	Silent	SNP	C	C	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	70897872	C	A	70897872	2	1	695	1	0	0	0	0	0	0	0	1	4011	610	22	4		4	CTH	1	70897872	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10		70897872	178352749	1	42414											
RPRD2	23248	broad.mit.edu	37	1	150445701	150445701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	150445701	C	T	150445701	3	4	695	1	0	0	0	0	1	0	0	0	13630	681	24	2	4319	2	RPRD2	1	150445701	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	79547829	150445701	98804920	2	42415											
NAV1	89796	mdanderson.org	37	1	201618543	201618543	+	Silent	SNP	C	C	T	rs6665525		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	201618543	C	T	201618543	2	4	695	1	0	0	0	0	0	0	0	1	10190	738	26	2		2	NAV1	1	201618543	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10	51172842	201618543	47632078	3	42416											
FLVCR1	28982	mdanderson.org	37	1	213031948	213031948	+	Missense_Mutation	SNP	G	G	C	rs11120047	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	213031948	G	C	213031948	3	2	695	1	0	0	0	0	1	0	0	0	5952	1203	42	4	156	4	FLVCR1	1	213031948	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	11413405	213031948	36218673	4	42417											
HHIPL2	79802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	222721242	222721242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	222721242	C	T	222721242	3	4	695	1	0	0	0	0	1	0	0	0	7101	652	23	1	2065	1	HHIPL2	1	222721242	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	9689294	222721242	26529379	5	42418											
MERTK	10461	mdanderson.org	37	2	112656372	112656372	+	Missense_Mutation	SNP	A	A	T	rs35898499		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	112656372	A	T	112656372	3	4	695	1	0	0	0	0	1	0	0	0	9486	318	11	5	62	5	MERTK	2	112656372	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10		112656372	130543001	6	42419											
RBPJ	3516	broad.mit.edu	37	4	26432510	26432511	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	26432511	-	G	26432510	7	5	695	1	0	1	1	0	0	0	0	0	13174	876	31	0	1489	0	RBPJ	4	26432510	Frame_Shift_Ins	INS	-	TCGA-KN-8419-01A-11D-2310-10		26432510	164721766	7	42420											
KIAA1211	57482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	4	57182677	57182677	+	Silent	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	57182677	G	A	57182677	2	1	695	1	0	0	0	0	0	0	0	1	8222	1132	40	1		1	KIAA1211	4	57182677	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	30750167	57182677	133971599	8	42421											
DSPP	1834	broad.mit.edu	37	4	88536259	88536264	+	In_Frame_Del	DEL	CAGTGA	CAGTGA	-	rs200486992	alternate_allele	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	CAGTGA	CAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	-	88536264	CAGTGA	-	88536259	7	5	695	1	0	1	0	1	0	0	0	0	4784	709	25	0	2459	0	DSPP	4	88536259	In_Frame_Del	DEL	CAGTGA	TCGA-KN-8419-01A-11D-2310-10	31353582	88536259	102618017	9	42422											
FRG1	2483	mdanderson.org	37	4	190876268	190876268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	190876268	A	G	190876268	3	3	695	1	0	0	0	0	1	0	0	0	6053	101	4	3	412	3	FRG1	4	190876268	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	102340009	190876268	278008	10	42423											
KIF4B	285643	broad.mit.edu	37	5	154394949	154394949	+	Silent	SNP	T	T	C	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	154394949	T	C	154394949	2	2	695	1	0	0	0	0	0	0	0	1	8311	1596	56	3		3	KIF4B	5	154394949	Silent	SNP	T	TCGA-KN-8419-01A-11D-2310-10		154394949	26520311	11	42424											
F12	2161	mdanderson.org	37	5	176831544	176831544	+	Silent	SNP	G	G	A	rs41309752		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	176831544	G	A	176831544	2	1	695	1	0	0	0	0	0	0	0	1	5341	1103	39	1		1	F12	5	176831544	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	22436595	176831544	4083716	12	42425											
FLT4	2324	broad.mit.edu;mdanderson.org;bcgsc.ca	37	5	180057729	180057729	+	Missense_Mutation	SNP	C	C	T	rs202015753		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	180057729	C	T	180057729	3	4	695	1	0	0	0	0	1	0	0	0	5951	893	31	1	3985	1	FLT4	5	180057729	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	3226185	180057729	857531	13	42426											
HLA-A	3105	mdanderson.org	37	6	29911119	29911119	+	Missense_Mutation	SNP	G	G	C	rs3173419	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	29911119	G	C	29911119	3	2	695	1	0	0	0	0	1	0	0	0	7202	1174	41	4	428	4	HLA-A	6	29911119	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		29911119	141203948	14	42427											
RSPH10B2	728194	mdanderson.org	37	7	6836259	6836259	+	Missense_Mutation	SNP	C	C	T	rs2528353	bycluster	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	6836259	C	T	6836259	3	4	695	1	0	0	0	0	1	0	0	0	13717	536	19	1	5053	1	RSPH10B2	7	6836259	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10		6836259	152302404	15	42428											
DDC	1644	broad.mit.edu;mdanderson.org;bcgsc.ca	37	7	50596997	50596997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	50596997	C	T	50596997	3	4	695	1	0	0	0	0	1	0	0	0	4327	652	23	1	1003	1	DDC	7	50596997	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	43760738	50596997	108541666	16	42429											
MUC17	140453	mdanderson.org	37	7	100680117	100680117	+	Missense_Mutation	SNP	T	T	C	rs147353603	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	100680117	T	C	100680117	3	2	695	1	0	0	0	0	1	0	0	0	9981	1464	51	3	5430	3	MUC17	7	100680117	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10	50083120	100680117	58458546	17	42430	578	2									
MUC17	140453	mdanderson.org	37	7	100680120	100680120	+	Missense_Mutation	SNP	C	C	A	rs147991653	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	100680120	C	A	100680120	3	1	695	1	0	0	0	0	1	0	0	0	9981	565	20	4	5433	4	MUC17	7	100680120	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	3	100680120	58458543	18	42431	578	2									
GIMAP8	155038	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	150171183	150171183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	150171183	C	T	150171183	3	4	695	1	0	0	0	0	1	0	0	0	6392	536	19	1	776	1	GIMAP8	7	150171183	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	49491063	150171183	8967480	19	42432											
EN2	2020	hgsc.bcm.edu	37	7	155251201	155251201	+	Silent	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	155251201	G	A	155251201	2	1	695	1	0	0	0	0	0	0	0	1	5112	1190	42	2		2	EN2	7	155251201	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	5080018	155251201	3887462	20	42433											
TNFRSF10C	8794	broad.mit.edu	37	8	22974315	22974315	+	Missense_Mutation	SNP	A	A	C	rs61736405		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	22974315	A	C	22974315	3	2	695	1	0	0	0	0	1	0	0	0	16294	43	2	5	569	5	TNFRSF10C	8	22974315	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10		22974315	123389707	21	42434											
DENND3	22898	broad.mit.edu	37	8	142175380	142175380	+	Silent	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	142175380	G	A	142175380	2	1	695	1	0	0	0	0	0	0	0	1	4434	991	35	2		2	DENND3	8	142175380	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	119201065	142175380	4188642	22	42435											
SLC45A4	57210	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	142221657	142221657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	142221657	G	A	142221657	3	1	695	1	0	0	0	0	1	0	0	0	14656	942	33	2	119	2	SLC45A4	8	142221657	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	46277	142221657	4142365	23	42436											
AQP7	364	mdanderson.org	37	9	33385786	33385786	+	Missense_Mutation	SNP	C	C	G	rs76908057		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	33385786	C	G	33385786	3	3	695	1	0	0	0	0	1	0	0	0	831	922	32	4	432	4	AQP7	9	33385786	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10		33385786	107827645	24	42437											
TMEM2	23670	ucsc.edu;bcgsc.ca	37	9	74300250	74300250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	74300250	T	C	74300250	3	2	695	1	0	0	0	0	1	0	0	0	16133	1638	57	3	140	3	TMEM2	9	74300250	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10	40914464	74300250	66913181	25	42438											
SLC46A2	57864	bcgsc.ca	37	9	115652859	115652859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	115652859	G	A	115652859	3	1	695	1	0	0	0	0	1	0	0	0	14658	1000	35	2	1340	2	SLC46A2	9	115652859	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	41352609	115652859	25560572	26	42439											
ZBTB34	403341	ucsc.edu	37	9	129642226	129642226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	129642226	A	G	129642226	3	3	695	1	0	0	0	0	1	0	0	0	17549	275	10	3	538	3	ZBTB34	9	129642226	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	13989367	129642226	11571205	27	42440											
TUBB8	347688	mdanderson.org	37	10	93778	93778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	93778	G	A	93778	3	1	695	1	0	0	0	0	1	0	0	0	16773	1203	42	2	784	2	TUBB8	10	93778	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		93778	135440969	28	42441											
FRG2B	441581	mdanderson.org	37	10	135439077	135439077	+	Silent	SNP	T	T	C	rs34204891	bycluster;alternate_allele	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	135439077	T	C	135439077	2	2	695	1	0	0	0	0	0	0	0	1	6054	1451	51	3		3	FRG2B	10	135439077	Silent	SNP	T	TCGA-KN-8419-01A-11D-2310-10	135345299	135439077	95670	29	42442											
TRIM48	79097	mdanderson.org	37	11	55032663	55032663	+	Missense_Mutation	SNP	T	T	C	rs200778682	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	55032663	T	C	55032663	3	2	695	1	0	0	0	0	1	0	0	0	16535	1493	52	3	338	3	TRIM48	11	55032663	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10		55032663	79973853	30	42443											
NAA40	79829	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	63719920	63719920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	63719920	G	A	63719920	3	1	695	1	0	0	0	0	1	0	0	0	10132	1116	39	1	311	1	NAA40	11	63719920	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	8687257	63719920	71286596	31	42444											
KRT84	3890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	52777475	52777475	+	Silent	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	52777475	G	A	52777475	2	1	695	1	0	0	0	0	0	0	0	1	8505	1280	45	2		2	KRT84	12	52777475	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10		52777475	81074420	32	42445											
IRAK3	11213	bcgsc.ca	37	12	66597673	66597673	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	66597673	G	T	66597673	4	4	695	1	0	0	0	0	0	1	0	0	7831	1362	47	4	322	4	IRAK3	12	66597673	Nonsense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	13820198	66597673	67254222	33	42446											
SELPLG	6404	hgsc.bcm.edu	37	12	109017489	109017489	+	Missense_Mutation	SNP	T	T	G	rs143013043	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	109017489	T	G	109017489	3	3	695	1	0	0	0	0	1	0	0	0	14033	1464	51	5	647	5	SELPLG	12	109017489	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10	42419816	109017489	24834406	34	42447											
OASL	8638	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	121471492	121471492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	121471492	C	A	121471492	3	1	695	1	0	0	0	0	1	0	0	0	10809	507	18	4	1311	4	OASL	12	121471492	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	12454003	121471492	12380403	35	42448											
SPTB	6710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	65245965	65245965	+	Splice_Site	SNP	C	C	T	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	65245965	C	T	65245965	5	4	695	1	0	0	0	0	0	0	1	0	15130	811	28	2	2642	2	SPTB	14	65245965	Splice_Site	SNP	C	TCGA-KN-8419-01A-11D-2310-10		65245965	42103575	36	42449											
AHNAK2	113146	mdanderson.org	37	14	105410417	105410417	+	Silent	SNP	G	G	A	rs200284292	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	105410417	G	A	105410417	2	1	695	1	0	0	0	0	0	0	0	1	415	991	35	2		2	AHNAK2	14	105410417	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	40164452	105410417	1939123	37	42450			1	112		3	3	2727	G		1.484414e-05
AHNAK2	113146	mdanderson.org	37	14	105410435	105410435	+	Silent	SNP	G	G	A	rs201237638	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	105410435	G	A	105410435	2	1	695	1	0	0	0	0	0	0	0	1	415	962	34	2		2	AHNAK2	14	105410435	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	18	105410435	1939105	38	42451			1	112		3	3	2727	G		1.484414e-05
AHNAK2	113146	mdanderson.org	37	14	105413143	105413143	+	Missense_Mutation	SNP	G	G	A	rs201434975	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	105413143	G	A	105413143	3	1	695	1	0	0	0	0	1	0	0	0	415	1348	47	2	8746	2	AHNAK2	14	105413143	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	2708	105413143	1936397	39	42452			1	112		3	3	2727	G		1.484414e-05
OR4N4	283694	mdanderson.org	37	15	22383138	22383138	+	Silent	SNP	C	C	G	rs145480212	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	22383138	C	G	22383138	2	3	695	1	0	0	0	0	0	0	0	1	11085	900	32	4		4	OR4N4	15	22383138	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10		22383138	80148254	40	42453											
CHTF18	63922	mdanderson.org	37	16	840607	840607	+	Missense_Mutation	SNP	C	C	G	rs149274107		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	840607	C	G	840607	3	3	695	1	0	0	0	0	1	0	0	0	3416	826	29	4	861	4	CHTF18	16	840607	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10		840607	89514146	41	42454											
CHTF18	63922	mdanderson.org	37	16	845819	845819	+	Silent	SNP	A	A	G	rs2294446	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	845819	A	G	845819	2	3	695	1	0	0	0	0	0	0	0	1	3416	146	6	3		3	CHTF18	16	845819	Silent	SNP	A	TCGA-KN-8419-01A-11D-2310-10	5212	845819	89508934	42	42455											
TAOK2	9344	mdanderson.org	37	16	29999225	29999225	+	Missense_Mutation	SNP	G	G	A	rs11864149	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	29999225	G	A	29999225	3	1	695	1	0	0	0	0	1	0	0	0	15560	1087	38	1	3690	1	TAOK2	16	29999225	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	29153406	29999225	60355528	43	42456											
HSF5	124535	broad.mit.edu	37	17	56565433	56565434	+	In_Frame_Ins	INS	-	-	CGGCCC	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	CGGCCC	56565434	-	CGGCCC	56565433	7	5	695	1	0	1	1	0	0	0	0	0	7406	1551	54	0	1611	0	HSF5	17	56565433	In_Frame_Ins	INS	-	TCGA-KN-8419-01A-11D-2310-10		56565433	24629777	44	42457											
TEX14	56155	broad.mit.edu;bcgsc.ca	37	17	56693673	56693673	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	56693673	C	T	56693673	4	4	695	1	0	0	0	0	0	1	0	0	15790	522	18	2		2	TEX14	17	56693673	Nonsense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	128240	56693673	24501537	45	42458											
MED13	9969	ucsc.edu;bcgsc.ca	37	17	60030379	60030379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	60030379	A	G	60030379	3	3	695	1	0	0	0	0	1	0	0	0	9437	246	9	3	476	3	MED13	17	60030379	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	3336706	60030379	21164831	46	42459											
DSG1	1828	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	28926018	28926018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	28926018	G	A	28926018	3	1	695	1	0	0	0	0	1	0	0	0	4778	1001	35	2	2011	2	DSG1	18	28926018	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		28926018	49151230	47	42460											
ZCCHC2	54877	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	60242420	60242420	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	60242420	A	T	60242420	3	4	695	1	0	0	0	0	1	0	0	0	17599	362	13	5	3156	5	ZCCHC2	18	60242420	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	31316402	60242420	17834828	48	42461											
MED16	10025	mdanderson.org	37	19	871135	871135	+	Silent	SNP	A	A	G	rs1683569	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	871135	A	G	871135	2	3	695	1	0	0	0	0	0	0	0	1	9441	349	13	3		3	MED16	19	871135	Silent	SNP	A	TCGA-KN-8419-01A-11D-2310-10		871135	58257848	49	42462											
WDR18	57418	mdanderson.org	37	19	984533	984533	+	Silent	SNP	T	T	C	rs2301810	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	984533	T	C	984533	2	2	695	1	0	0	0	0	0	0	0	1	17290	1490	52	3		3	WDR18	19	984533	Silent	SNP	T	TCGA-KN-8419-01A-11D-2310-10	113398	984533	58144450	50	42463											
HMHA1	23526	broad.mit.edu;bcgsc.ca	37	19	1073206	1073206	+	Silent	SNP	C	C	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	1073206	C	A	1073206	2	1	695	1	0	0	0	0	0	0	0	1	7247	813	29	4		4	HMHA1	19	1073206	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10	88673	1073206	58055777	51	42464											
PRAM1	84106	mdanderson.org	37	19	8564469	8564469	+	Missense_Mutation	SNP	C	C	G	rs4990821	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	8564469	C	G	8564469	3	3	695	1	0	0	0	0	1	0	0	0	12433	835	29	4	1822	4	PRAM1	19	8564469	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	7491263	8564469	50564514	52	42465											
MUC16	94025	mdanderson.org	37	19	8999449	8999449	+	Missense_Mutation	SNP	G	G	T	rs76798407	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	8999449	G	T	8999449	3	4	695	1	0	0	0	0	1	0	0	0	9980	1348	47	4	2913	4	MUC16	19	8999449	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	434980	8999449	50129534	53	42466			2	113		3	3	6157	N	T_G_A	7.53706e-05
MUC16	94025	mdanderson.org	37	19	8999478	8999478	+	Missense_Mutation	SNP	T	T	C	rs73493659	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	C	8999478	T	C	8999478	3	2	695	1	0	0	0	0	1	0	0	0	9980	1580	55	3	2942	3	MUC16	19	8999478	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10	29	8999478	50129505	54	42467			2	113		3	3	6157	N	T_G_A	7.53706e-05
MUC16	94025	mdanderson.org	37	19	9005605	9005605	+	Silent	SNP	A	A	T	rs74835716		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	9005605	A	T	9005605	2	4	695	1	0	0	0	0	0	0	0	1	9980	175	7	5		5	MUC16	19	9005605	Silent	SNP	A	TCGA-KN-8419-01A-11D-2310-10	6127	9005605	50123378	55	42468			2	113		3	3	6157	N	T_G_A	7.53706e-05
NLRP9	338321	ucsc.edu;bcgsc.ca	37	19	56241255	56241255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	G	56241255	A	G	56241255	3	3	695	1	0	0	0	0	1	0	0	0	10491	304	11	3	1067	3	NLRP9	19	56241255	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	47235650	56241255	2887728	56	42469											
ZNF831	128611	mdanderson.org	37	20	57767041	57767041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	57767041	G	A	57767041	3	1	695	1	0	0	0	0	1	0	0	0	18197	971	34	2	969	2	ZNF831	20	57767041	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		57767041	5258479	57	42470											
KRTAP10-1	386677	mdanderson.org	37	21	45959195	45959195	+	Missense_Mutation	SNP	G	G	A	rs233316	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	45959195	G	A	45959195	3	1	695	1	0	0	0	0	1	0	0	0	8512	1116	39	1	13	1	KRTAP10-1	21	45959195	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		45959195	2170700	58	42471											
PI4KA	5297	mdanderson.org	37	22	21088357	21088357	+	Silent	SNP	G	G	A	rs2629363		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	21088357	G	A	21088357	2	1	695	1	0	0	0	0	0	0	0	1	11880	1136	40	1		1	PI4KA	22	21088357	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10		21088357	30216209	59	42472											
OSBP2	23762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	22	31266429	31266429	+	Silent	SNP	C	C	T	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	31266429	C	T	31266429	2	4	695	1	0	0	0	0	0	0	0	1	11281	535	19	1		1	OSBP2	22	31266429	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10	10178072	31266429	20038137	60	42473											
SSTR3	6753	hgsc.bcm.edu	37	22	37603327	37603327	+	Silent	SNP	G	G	A	rs141903633	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	37603327	G	A	37603327	2	1	695	1	0	0	0	0	0	0	0	1	15211	1103	39	1		1	SSTR3	22	37603327	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	6336898	37603327	13701239	61	42474											
TYMP	1890	mdanderson.org	37	22	50965102	50965102	+	Silent	SNP	C	C	T	rs8141558		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	T	50965102	C	T	50965102	2	4	695	1	0	0	0	0	0	0	0	1	16823	581	21	2		2	TYMP	22	50965102	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10	13361775	50965102	339464	62	42475											
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7	A	51076024	G	A	51076024	2	1	695	1	0	0	0	0	0	0	0	1	10733	991	35	2		2	NUDT10	23	51076024	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10		51076024	104194536	63	42476											
HCRTR1	3061	ucsc.edu	37	1	32085198	32085198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	C	32085198	T	C	32085198	3	2	696	1	0	0	0	0	1	0	0	0	7008	1667	58	3	271	3	HCRTR1	1	32085198	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10		32085198	217165423	1	42477											
ZC3H12A	80149	ucsc.edu;bcgsc.ca	37	1	37947246	37947246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	C	37947246	T	C	37947246	3	2	696	1	0	0	0	0	1	0	0	0	17573	1725	60	3	638	3	ZC3H12A	1	37947246	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	5862048	37947246	211303375	2	42478											
DNASE2B	58511	broad.mit.edu;mdanderson.org	37	1	84876612	84876612	+	Silent	SNP	A	A	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	84876612	A	T	84876612	2	4	696	1	0	0	0	0	0	0	0	1	4667	146	6	5		5	DNASE2B	1	84876612	Silent	SNP	A	TCGA-KN-8421-01A-11D-2310-10	46929366	84876612	164374009	3	42479											
STX6	10228	hgsc.bcm.edu;ucsc.edu	37	1	180945772	180945772	+	Silent	SNP	T	T	C	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	C	180945772	T	C	180945772	2	2	696	1	0	0	0	0	0	0	0	1	15361	1490	52	3		3	STX6	1	180945772	Silent	SNP	T	TCGA-KN-8421-01A-11D-2310-10	96069160	180945772	68304849	4	42480											
PRKD3	23683	broad.mit.edu	37	2	37483813	37483813	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	-	37483813	G	-	37483813	7	5	696	1	0	1	0	1	0	0	0	0	12530	942	33	0	279	0	PRKD3	2	37483813	Frame_Shift_Del	DEL	G	TCGA-KN-8421-01A-11D-2310-10		37483813	205715560	5	42481											
CCDC85A	114800	broad.mit.edu;mdanderson.org	37	2	56420144	56420144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	56420144	G	A	56420144	3	1	696	1	0	0	0	0	1	0	0	0	2861	1087	38	1	815	1	CCDC85A	2	56420144	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	18936331	56420144	186779229	6	42482											
RAB11FIP5	26056	mdanderson.org	37	2	73316240	73316240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	G	73316240	A	G	73316240	3	3	696	1	0	0	0	0	1	0	0	0	12910	304	11	3	1342	3	RAB11FIP5	2	73316240	Missense_Mutation	SNP	A	TCGA-KN-8421-01A-11D-2310-10	16896096	73316240	169883133	7	42483											
R3HDM1	23518	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	136473266	136473266	+	Splice_Site	SNP	T	T	A	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	136473266	T	A	136473266	5	1	696	1	0	0	0	0	0	0	1	0	12900	1652	57	5	2860	5	R3HDM1	2	136473266	Splice_Site	SNP	T	TCGA-KN-8421-01A-11D-2310-10	63157026	136473266	106726107	8	42484											
PRPF40A	55660	hgsc.bcm.edu;ucsc.edu	37	2	153573942	153573942	+	Silent	SNP	G	G	A	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	153573942	G	A	153573942	2	1	696	1	0	0	0	0	0	0	0	1	12581	1306	46	2		2	PRPF40A	2	153573942	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	17100676	153573942	89625431	9	42485											
SCN3A	6328	broad.mit.edu;mdanderson.org	37	2	165987817	165987817	+	Silent	SNP	G	G	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	165987817	G	T	165987817	2	4	696	1	0	0	0	0	0	0	0	1	13931	1277	45	4		4	SCN3A	2	165987817	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	12413875	165987817	77211556	10	42486											
FASTKD1	79675	bcgsc.ca	37	2	170393737	170393737	+	Missense_Mutation	SNP	C	C	T	rs139576803		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	170393737	C	T	170393737	3	4	696	1	0	0	0	0	1	0	0	0	5692	695	24	2	371	2	FASTKD1	2	170393737	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	4405920	170393737	72805636	11	42487											
TTN	7273	broad.mit.edu	37	2	179401232	179401232	+	Silent	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	179401232	C	T	179401232	2	4	696	1	0	0	0	0	0	0	0	1	16747	796	28	2		2	TTN	2	179401232	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	9007495	179401232	63798141	12	42488											
WDR52	55779	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	113114596	113114596	+	Splice_Site	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	113114596	C	T	113114596	5	4	696	1	0	0	0	0	0	0	1	0	17316	492	17	2	3772	2	WDR52	3	113114596	Splice_Site	SNP	C	TCGA-KN-8421-01A-11D-2310-10		113114596	84907834	13	42489											
MUC4	4585	mdanderson.org	37	3	195505945	195505945	+	Missense_Mutation	SNP	A	A	G	rs200786826		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	G	195505945	A	G	195505945	3	3	696	1	0	0	0	0	1	0	0	0	9985	159	6	3		3	MUC4	3	195505945	Missense_Mutation	SNP	A	TCGA-KN-8421-01A-11D-2310-10	82391349	195505945	2516485	14	42490			1	114		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	mdanderson.org	37	3	195507049	195507049	+	Missense_Mutation	SNP	G	G	A	rs76834296		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	195507049	G	A	195507049	3	1	696	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195507049	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	1104	195507049	2515381	15	42491			1	114		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	mdanderson.org	37	3	195509093	195509093	+	Missense_Mutation	SNP	G	G	A	rs77902873		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	195509093	G	A	195509093	3	1	696	1	0	0	0	0	1	0	0	0	9985	1232	43	2		2	MUC4	3	195509093	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	2044	195509093	2513337	16	42492			1	114		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	mdanderson.org	37	3	195509108	195509108	+	Missense_Mutation	SNP	T	T	A	rs200863118		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	195509108	T	A	195509108	3	1	696	1	0	0	0	0	1	0	0	0	9985	1696	59	5		5	MUC4	3	195509108	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	15	195509108	2513322	17	42493			1	114		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	bcgsc.ca	37	3	195514379	195514379	+	Missense_Mutation	SNP	T	T	C	rs79461778		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	C	195514379	T	C	195514379	3	2	696	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195514379	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	5271	195514379	2508051	18	42494			1	114		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	bcgsc.ca	37	3	195514403	195514403	+	Missense_Mutation	SNP	C	C	T	rs79754259		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	195514403	C	T	195514403	3	4	696	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195514403	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	24	195514403	2508027	19	42495			1	114		6	6	8459	N	T_G_C_A	8.93914e-12
TLR1	7096	hgsc.bcm.edu	37	4	38798159	38798159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	38798159	C	T	38798159	3	4	696	1	0	0	0	0	1	0	0	0	15961	536	19	1	70	1	TLR1	4	38798159	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		38798159	152356117	20	42496											
DSPP	1834	mdanderson.org	37	4	88537088	88537088	+	Missense_Mutation	SNP	A	A	G	rs201754564		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	G	88537088	A	G	88537088	3	3	696	1	0	0	0	0	1	0	0	0	4784	130	5	3	3288	3	DSPP	4	88537088	Missense_Mutation	SNP	A	TCGA-KN-8421-01A-11D-2310-10	49738929	88537088	102617188	21	42497											
POMZP3	22932	mdanderson.org	37	7	76255328	76255328	+	Silent	SNP	C	C	T	rs199608185		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	76255328	C	T	76255328	2	4	696	1	0	0	0	0	0	0	0	1	12254	755	27	1		1	POMZP3	7	76255328	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10		76255328	82883335	22	42498											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	82579951	82579951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	C	82579951	T	C	82579951	3	2	696	1	0	0	0	0	1	0	0	0	11590	1406	49	3	5572	3	PCLO	7	82579951	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	6324623	82579951	76558712	23	42499											
FAM86B1	85002	mdanderson.org	37	8	12044010	12044010	+	Missense_Mutation	SNP	C	C	T	rs201876260	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	12044010	C	T	12044010	3	4	696	1	0	0	0	0	1	0	0	0	5651	884	31	1	411	1	FAM86B1	8	12044010	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		12044010	134320012	24	42500											
MYC	4609	broad.mit.edu	37	8	128752827	128752827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	-	128752827	A	-	128752827	7	5	696	1	0	1	0	1	0	0	0	0	10023	159	6	0	998	0	MYC	8	128752827	Frame_Shift_Del	DEL	A	TCGA-KN-8421-01A-11D-2310-10	116708817	128752827	17611195	25	42501											
ARC	23237	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	8	143694490	143694490	+	Silent	SNP	G	G	A	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	143694490	G	A	143694490	2	1	696	1	0	0	0	0	0	0	0	1	841	1103	39	1		1	ARC	8	143694490	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	14941663	143694490	2669532	26	42502											
PLEC	5339	mdanderson.org	37	8	144996111	144996111	+	Silent	SNP	C	C	T	rs34803322	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	144996111	C	T	144996111	2	4	696	1	0	0	0	0	0	0	0	1	12059	697	25	2		2	PLEC	8	144996111	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	1301621	144996111	1367911	27	42503											
PTPRD	5789	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	8521528	8521528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	G	8521528	C	G	8521528	3	3	696	1	0	0	0	0	1	0	0	0	12812	913	32	4	5204	4	PTPRD	9	8521528	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		8521528	132691903	28	42504											
PRSS3	5646	mdanderson.org	37	9	33798016	33798016	+	Silent	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	33798016	C	T	33798016	2	4	696	1	0	0	0	0	0	0	0	1	12632	581	21	2		2	PRSS3	9	33798016	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	25276488	33798016	107415415	29	42505											
FAM120AOS	158293	mdanderson.org	37	9	96214928	96214928	+	Missense_Mutation	SNP	G	G	A	rs1055710	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	96214928	G	A	96214928	3	1	696	1	0	0	0	0	1	0	0	0	5420	942	33	2	718	2	FAM120AOS	9	96214928	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	62416912	96214928	44998503	30	42506											
MUC6	4588	mdanderson.org	37	11	1017684	1017684	+	Missense_Mutation	SNP	G	G	A	rs112886536	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	1017684	G	A	1017684	3	1	696	1	0	0	0	0	1	0	0	0	9987	1203	42	2	2214	2	MUC6	11	1017684	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10		1017684	133988832	31	42507											
MUC2	4583	mdanderson.org	37	11	1093575	1093575	+	Silent	SNP	G	G	T	rs201450769	alternate_allele	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	1093575	G	T	1093575	2	4	696	1	0	0	0	0	0	0	0	1	9982	1103	39	4		4	MUC2	11	1093575	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	75891	1093575	133912941	32	42508											
OR9G1	390174	mdanderson.org	37	11	56468440	56468440	+	Missense_Mutation	SNP	G	G	T	rs12421330	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	56468440	G	T	56468440	3	4	696	1	0	0	0	0	1	0	0	0	11257	1116	39	4	579	4	OR9G1	11	56468440	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	55374865	56468440	78538076	33	42509											
ATG2A	23130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	64664265	64664265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	64664265	C	T	64664265	3	4	696	1	0	0	0	0	1	0	0	0	1093	652	23	1	605	1	ATG2A	11	64664265	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	8195825	64664265	70342251	34	42510											
KRTAP5-10	387273	mdanderson.org	37	11	71276702	71276702	+	Silent	SNP	C	C	T	rs113977776		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	71276702	C	T	71276702	2	4	696	1	0	0	0	0	0	0	0	1	8566	784	28	2		2	KRTAP5-10	11	71276702	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	6612437	71276702	63729814	35	42511											
DLG2	1740	mdanderson.org	37	11	84245725	84245725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	84245725	C	T	84245725	3	4	696	1	0	0	0	0	1	0	0	0	4557	884	31	1	2767	1	DLG2	11	84245725	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	12969023	84245725	50760791	36	42512											
OR10G4	390264	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	11	123886665	123886665	+	Silent	SNP	G	G	A	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	123886665	G	A	123886665	2	1	696	1	0	0	0	0	0	0	0	1	10908	1074	38	1		1	OR10G4	11	123886665	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	39640940	123886665	11119851	37	42513											
PRB2	653247	mdanderson.org	37	12	11546006	11546006	+	Missense_Mutation	SNP	G	G	A	rs74718516		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	11546006	G	A	11546006	3	1	696	1	0	0	0	0	1	0	0	0	12453	1261	44	2	248	2	PRB2	12	11546006	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10		11546006	122305889	38	42514											
GALNT6	11226	broad.mit.edu	37	12	51757967	51757967	+	Silent	SNP	G	G	A	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	51757967	G	A	51757967	2	1	696	1	0	0	0	0	0	0	0	1	6224	1049	37	1		1	GALNT6	12	51757967	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	40211961	51757967	82093928	39	42515											
KBTBD6	89890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	41704863	41704863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	41704863	C	A	41704863	3	1	696	1	0	0	0	0	1	0	0	0	8004	856	30	4	243	4	KBTBD6	13	41704863	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		41704863	73465015	40	42516											
POTEG	404785	mdanderson.org	37	14	19558994	19558994	+	Missense_Mutation	SNP	G	G	A	rs4497955	bycluster;by2hit2allele	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	19558994	G	A	19558994	3	1	696	1	0	0	0	0	1	0	0	0	12273	1145	40	1	650	1	POTEG	14	19558994	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10		19558994	87790546	41	42517											
OR4N2	390429	broad.mit.edu	37	14	20296067	20296067	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	-	20296067	G	-	20296067	7	5	696	1	0	1	0	1	0	0	0	0	11084	1377	48	0	462	0	OR4N2	14	20296067	Frame_Shift_Del	DEL	G	TCGA-KN-8421-01A-11D-2310-10	737073	20296067	87053473	42	42518											
RFX7	64864	ucsc.edu	37	15	56388708	56388708	+	Silent	SNP	T	T	C	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	C	56388708	T	C	56388708	2	2	696	1	0	0	0	0	0	0	0	1	13281	1722	60	3		3	RFX7	15	56388708	Silent	SNP	T	TCGA-KN-8421-01A-11D-2310-10		56388708	46142684	43	42519											
ELMO3	79767	ucsc.edu	37	16	67233116	67233116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	C	67233116	T	C	67233116	3	2	696	1	0	0	0	0	1	0	0	0	5069	1667	58	3	48	3	ELMO3	16	67233116	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10		67233116	23121637	44	42520											
KIAA0753	9851	hgsc.bcm.edu	37	17	6510586	6510586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	6510586	C	T	6510586	3	4	696	1	0	0	0	0	1	0	0	0	8198	768	27	1	1105	1	KIAA0753	17	6510586	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		6510586	74684624	45	42521											
BCAS3	54828	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	59118255	59118255	+	Splice_Site	SNP	T	T	G	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	G	59118255	T	G	59118255	5	3	696	1	0	0	0	0	0	0	1	0	1352	1652	57	5	2150	5	BCAS3	17	59118255	Splice_Site	SNP	T	TCGA-KN-8421-01A-11D-2310-10	52607669	59118255	22076955	46	42522											
XAB2	56949	mdanderson.org	37	19	7694393	7694393	+	Silent	SNP	G	G	A	rs4134809	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	7694393	G	A	7694393	2	1	696	1	0	0	0	0	0	0	0	1	17430	929	33	2		2	XAB2	19	7694393	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10		7694393	51434590	47	42523											
VSTM1	284415	hgsc.bcm.edu;mdanderson.org	37	19	54561798	54561798	+	Silent	SNP	A	A	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	54561798	A	T	54561798	2	4	696	1	0	0	0	0	0	0	0	1	17240	117	5	5		5	VSTM1	19	54561798	Silent	SNP	A	TCGA-KN-8421-01A-11D-2310-10	46867405	54561798	4567185	48	42524											
NLRP7	199713	ucsc.edu;mdanderson.org;bcgsc.ca	37	19	55447692	55447692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	55447692	C	T	55447692	3	4	696	1	0	0	0	0	1	0	0	0	10489	768	27	1	900	1	NLRP7	19	55447692	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	885894	55447692	3681291	49	42525											
SNRPB2	6629	mdanderson.org;bcgsc.ca	37	20	16717906	16717906	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	16717906	C	T	16717906	4	4	696	1	0	0	0	0	0	1	0	0	14875	782	27	1	248	1	SNRPB2	20	16717906	Nonsense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		16717906	46307614	50	42526											
WFDC5	149708	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	43739299	43739299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	43739299	C	T	43739299	3	4	696	1	0	0	0	0	1	0	0	0	17366	768	27	1	180	1	WFDC5	20	43739299	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	27021393	43739299	19286221	51	42527											
TMPRSS15	5651	broad.mit.edu;mdanderson.org	37	21	19744529	19744529	+	Silent	SNP	G	G	A	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	19744529	G	A	19744529	2	1	696	1	0	0	0	0	0	0	0	1	16258	1136	40	1		1	TMPRSS15	21	19744529	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10		19744529	28385366	52	42528											
B3GALT5	10317	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	21	41033159	41033159	+	Missense_Mutation	SNP	G	G	A	rs144752439		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	41033159	G	A	41033159	3	1	696	1	0	0	0	0	1	0	0	0	1250	1145	40	1	675	1	B3GALT5	21	41033159	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	21288630	41033159	7096736	53	42529											
KRTAP10-2	386679	mdanderson.org	37	21	45971081	45971081	+	Silent	SNP	C	C	T	rs79593866		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	45971081	C	T	45971081	2	4	696	1	0	0	0	0	0	0	0	1	8516	639	23	1		1	KRTAP10-2	21	45971081	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	4937922	45971081	2158814	54	42530											
GAS2L1	10634	ucsc.edu;mdanderson.org	37	22	29704662	29704662	+	Silent	SNP	C	C	G	rs56037813		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	G	29704662	C	G	29704662	2	3	696	1	0	0	0	0	0	0	0	1	6253	639	23	4		4	GAS2L1	22	29704662	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10		29704662	21599904	55	42531											
ELFN2	114794	bcgsc.ca	37	22	37770611	37770611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	C	37770611	T	C	37770611	3	2	696	1	0	0	0	0	1	0	0	0	5060	1435	50	3	1502	3	ELFN2	22	37770611	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	8065949	37770611	13533955	56	42532											
ZRSR2	8233	mdanderson.org	37	X	15838366	15838366	+	Silent	SNP	C	C	T	rs2301724	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	15838366	C	T	15838366	2	4	696	1	0	0	0	0	0	0	0	1	18237	535	19	1		1	ZRSR2	23	15838366	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10		15838366	139432194	57	42533											
NKAP	79576	broad.mit.edu	37	X	119072773	119072773	+	Silent	SNP	C	C	T	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	T	119072773	C	T	119072773	2	4	696	1	0	0	0	0	0	0	0	1	10446	869	30	2		2	NKAP	23	119072773	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	103234407	119072773	36197787	58	42534											
ZBTB33	10009	broad.mit.edu	37	X	119389135	119389135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643	A	119389135	G	A	119389135	3	1	696	1	0	0	0	0	1	0	0	0	17548	1174	41	2	1867	2	ZBTB33	23	119389135	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	316362	119389135	35881425	59	42535											
PRAMEF1	65121	mdanderson.org	37	1	12854401	12854401	+	Nonsense_Mutation	SNP	G	G	T	rs78584260	alternate_allele	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	12854401	G	T	12854401	4	4	697	1	0	0	0	0	0	1	0	0	12435	943	33	4	631	4	PRAMEF1	1	12854401	Nonsense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10		12854401	236396220	1	42536											
PRAMEF4	400735	mdanderson.org	37	1	12939548	12939548	+	Silent	SNP	G	G	C	rs77695621	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	12939548	G	C	12939548	2	2	697	1	0	0	0	0	0	0	0	1	12447	1219	43	4		4	PRAMEF4	1	12939548	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10	85147	12939548	236311073	2	42537											
CPT2	1376	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	53676357	53676357	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	53676357	C	G	53676357	3	3	697	1	0	0	0	0	1	0	0	0	3836	564	20	4	1025	4	CPT2	1	53676357	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	40736809	53676357	195574264	3	42538											
RBMXL1	494115	mdanderson.org	37	1	89448841	89448841	+	Silent	SNP	T	T	C	rs150045246		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	89448841	T	C	89448841	2	2	697	1	0	0	0	0	0	0	0	1	13166	1548	54	3		3	RBMXL1	1	89448841	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	35772484	89448841	159801780	4	42539			1	115		2	2	28	N	T_A	6.105108e-05
RBMXL1	494115	mdanderson.org	37	1	89448868	89448868	+	Nonsense_Mutation	SNP	A	A	T	rs200907077		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	89448868	A	T	89448868	4	4	697	1	0	0	0	0	0	1	0	0	13166	108	4	5	534	5	RBMXL1	1	89448868	Nonsense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	27	89448868	159801753	5	42540			1	115		2	2	28	N	T_A	6.105108e-05
RPRD2	23248	broad.mit.edu	37	1	150432553	150432553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	150432553	A	G	150432553	3	3	697	1	0	0	0	0	1	0	0	0	13630	15	1	3	1205	3	RPRD2	1	150432553	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	60983685	150432553	98818068	6	42541											
FLG	2312	mdanderson.org	37	1	152276282	152276282	+	Missense_Mutation	SNP	C	C	G	rs76133835	bycluster	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	152276282	C	G	152276282	3	3	697	1	0	0	0	0	1	0	0	0	5929	922	32	4	1109	4	FLG	1	152276282	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	1843729	152276282	96974339	7	42542											
PEAR1	375033	broad.mit.edu	37	1	156877478	156877478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	156877478	T	C	156877478	3	2	697	1	0	0	0	0	1	0	0	0	11719	1609	56	3	743	3	PEAR1	1	156877478	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	4601196	156877478	92373143	8	42543											
OR10Z1	128368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	158576392	158576392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	158576392	T	A	158576392	3	1	697	1	0	0	0	0	1	0	0	0	10930	1580	55	5	166	5	OR10Z1	1	158576392	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	1698914	158576392	90674229	9	42544											
ACBD3	64746	broad.mit.edu;hgsc.bcm.edu	37	1	226349254	226349255	+	In_Frame_Ins	INS	-	-	TTC	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	TTC	226349255	-	TTC	226349254	7	5	697	1	0	1	1	0	0	0	0	0	123	1608	56	0	900	0	ACBD3	1	226349254	In_Frame_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10	67772862	226349254	22901367	10	42545	579	2									
ACBD3	64746	bcgsc.ca	37	1	226349255	226349256	+	In_Frame_Ins	INS	-	-	TTC	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	TTC	226349256	-	TTC	226349255	7	5	697	1	0	1	1	0	0	0	0	0	123	1838	64	0	901	0	ACBD3	1	226349255	In_Frame_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10	1	226349255	22901366	11	42546	579	2									
MARCO	8685	hgsc.bcm.edu	37	2	119750740	119750740	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	-	119750740	C	-	119750740	7	5	697	1	0	1	0	1	0	0	0	0	9318	506	18	0	1355	0	MARCO	2	119750740	Frame_Shift_Del	DEL	C	TCGA-KN-8422-01A-11D-2310-10		119750740	123448633	12	42547	580	2									
MARCO	8685	bcgsc.ca	37	2	119750741	119750741	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	-	119750741	C	-	119750741	7	5	697	1	0	1	0	1	0	0	0	0	9318	644	23	0	1356	0	MARCO	2	119750741	Frame_Shift_Del	DEL	C	TCGA-KN-8422-01A-11D-2310-10	1	119750741	123448632	13	42548	580	2									
MFSD6	54842	broad.mit.edu	37	2	191364759	191364759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	191364759	G	A	191364759	3	1	697	1	0	0	0	0	1	0	0	0	9542	1175	41	2	2213	2	MFSD6	2	191364759	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	71614018	191364759	51834614	14	42549											
BHLHE40	8553	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	5025274	5025274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	5025274	A	C	5025274	3	2	697	1	0	0	0	0	1	0	0	0	1423	188	7	5	1154	5	BHLHE40	3	5025274	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10		5025274	192997156	15	42550											
CLASP2	23122	ucsc.edu;mdanderson.org	37	3	33586217	33586217	+	Silent	SNP	G	G	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	33586217	G	A	33586217	2	1	697	1	0	0	0	0	0	0	0	1	3457	1252	44	2		2	CLASP2	3	33586217	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10	28560943	33586217	164436213	16	42551											
KBTBD5	131377	hgsc.bcm.edu	37	3	42730128	42730128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	42730128	C	T	42730128	3	4	697	1	0	0	0	0	1	0	0	0	8003	652	23	1	1350	1	KBTBD5	3	42730128	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	9143911	42730128	155292302	17	42552											
C3orf38	285237	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	88205252	88205252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	88205252	C	A	88205252	3	1	697	1	0	0	0	0	1	0	0	0	2230	913	32	4	467	4	C3orf38	3	88205252	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	45475124	88205252	109817178	18	42553											
MUC4	4585	mdanderson.org	37	3	195509331	195509331	+	Silent	SNP	C	C	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	195509331	C	A	195509331	2	1	697	1	0	0	0	0	0	0	0	1	9985	755	27	4		4	MUC4	3	195509331	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	107304079	195509331	2513099	19	42554											
MUC4	4585	mdanderson.org	37	3	195512445	195512445	+	Silent	SNP	C	C	A	rs200972857	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	195512445	C	A	195512445	2	1	697	1	0	0	0	0	0	0	0	1	9985	639	23	4		4	MUC4	3	195512445	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	3114	195512445	2509985	20	42555											
SDAD1	55153	broad.mit.edu	37	4	76896979	76896979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	76896979	A	G	76896979	3	3	697	1	0	0	0	0	1	0	0	0	13963	391	14	3	1635	3	SDAD1	4	76896979	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10		76896979	114257297	21	42556											
AGPAT9	84803	mdanderson.org	37	4	84502873	84502873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	84502873	T	C	84502873	3	2	697	1	0	0	0	0	1	0	0	0	392	1667	58	3	377	3	AGPAT9	4	84502873	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	7605894	84502873	106651403	22	42557											
NDST4	64579	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	115767025	115767025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	115767025	A	T	115767025	3	4	697	1	0	0	0	0	1	0	0	0	10265	333	12	5	569	5	NDST4	4	115767025	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	31264152	115767025	75387251	23	42558											
ABCE1	6059	broad.mit.edu	37	4	146041093	146041093	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	-	146041093	T	-	146041093	7	5	697	1	0	1	0	1	0	0	0	0	64	1493	52	0	970	0	ABCE1	4	146041093	Frame_Shift_Del	DEL	T	TCGA-KN-8422-01A-11D-2310-10	30274068	146041093	45113183	24	42559											
ADAM29	11086	mdanderson.org	37	4	175899075	175899076	+	Silent	DNP	CA	CA	TG	rs61744599	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	TG	175899076	CA	TG	175899075	2	4	697	1	0	0	0	0	0	0	0	1	247	478	17	2		2	ADAM29	4	175899075	Silent	DNP	CA	TCGA-KN-8422-01A-11D-2310-10	29857982	175899075	15255201	25	42560											
PRDM9	56979	mdanderson.org	37	5	23527323	23527323	+	Missense_Mutation	SNP	C	C	G	rs200539936	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	23527323	C	G	23527323	3	3	697	1	0	0	0	0	1	0	0	0	12473	565	20	4	2164	4	PRDM9	5	23527323	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10		23527323	157387937	26	42561											
CDC23	8697	broad.mit.edu	37	5	137524673	137524673	+	Silent	SNP	C	C	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	137524673	C	T	137524673	2	4	697	1	0	0	0	0	0	0	0	1	3063	755	27	1		1	CDC23	5	137524673	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	113997350	137524673	43390587	27	42562											
FAM184A	79632	ucsc.edu	37	6	119332586	119332586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	119332586	T	C	119332586	3	2	697	1	0	0	0	0	1	0	0	0	5515	1783	62	3	1933	3	FAM184A	6	119332586	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10		119332586	51782481	28	42563											
COL28A1	340267	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	7477054	7477054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	7477054	T	C	7477054	3	2	697	1	0	0	0	0	1	0	0	0	3688	1725	60	3	1671	3	COL28A1	7	7477054	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10		7477054	151661609	29	42564											
DOCK5	80005	broad.mit.edu	37	8	25203089	25203089	+	Silent	SNP	C	C	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	25203089	C	T	25203089	2	4	697	1	0	0	0	0	0	0	0	1	4692	912	32	2		2	DOCK5	8	25203089	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10		25203089	121160933	30	42565											
CNGB3	54714	bcgsc.ca	37	8	87660049	87660049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	87660049	T	C	87660049	3	2	697	1	0	0	0	0	1	0	0	0	3603	1530	53	3	1503	3	CNGB3	8	87660049	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	62456960	87660049	58703973	31	42566											
ORM1	5004	broad.mit.edu	37	9	117088629	117088629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	117088629	G	A	117088629	3	1	697	1	0	0	0	0	1	0	0	0	11274	1175	41	2	620	2	ORM1	9	117088629	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10		117088629	24124802	32	42567											
TFAM	7019	ucsc.edu	37	10	60148464	60148464	+	Missense_Mutation	SNP	T	T	G	rs77418790		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	60148464	T	G	60148464	3	3	697	1	0	0	0	0	1	0	0	0	15798	1638	57	5	340	5	TFAM	10	60148464	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10		60148464	75386283	33	42568											
TYSND1	219743	mdanderson.org	37	10	71905695	71905695	+	Silent	SNP	A	A	G	rs10999158		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	71905695	A	G	71905695	2	3	697	1	0	0	0	0	0	0	0	1	16829	146	6	3		3	TYSND1	10	71905695	Silent	SNP	A	TCGA-KN-8422-01A-11D-2310-10	11757231	71905695	63629052	34	42569											
TBC1D12	23232	ucsc.edu	37	10	96163181	96163181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	96163181	T	C	96163181	3	2	697	1	0	0	0	0	1	0	0	0	15613	1609	56	3	813	3	TBC1D12	10	96163181	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	24257486	96163181	39371566	35	42570											
MUC6	4588	mdanderson.org	37	11	1017530	1017530	+	Silent	SNP	G	G	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	1017530	G	A	1017530	2	1	697	1	0	0	0	0	0	0	0	1	9987	1252	44	2		2	MUC6	11	1017530	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10		1017530	133988986	36	42571											
MUC6	4588	mdanderson.org	37	11	1018394	1018394	+	Silent	SNP	C	C	T	rs111444881		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	1018394	C	T	1018394	2	4	697	1	0	0	0	0	0	0	0	1	9987	912	32	2		2	MUC6	11	1018394	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	864	1018394	133988122	37	42572											
EML3	256364	mdanderson.org	37	11	62378660	62378660	+	Silent	SNP	G	G	A	rs12808829	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	62378660	G	A	62378660	2	1	697	1	0	0	0	0	0	0	0	1	5100	1078	38	1		1	EML3	11	62378660	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10	61360266	62378660	72627856	38	42573											
EFEMP2	30008	ucsc.edu	37	11	65635766	65635766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	65635766	T	C	65635766	3	2	697	1	0	0	0	0	1	0	0	0	4944	1623	56	3	369	3	EFEMP2	11	65635766	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	3257106	65635766	69370750	39	42574											
PPFIA1	8500	ucsc.edu	37	11	70178163	70178163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	70178163	A	G	70178163	3	3	697	1	0	0	0	0	1	0	0	0	12316	304	11	3	1205	3	PPFIA1	11	70178163	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	4542397	70178163	64828353	40	42575											
FOLH1B	219595	broad.mit.edu;mdanderson.org	37	11	89421805	89421805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	89421805	G	C	89421805	3	2	697	1	0	0	0	0	1	0	0	0	5987	1174	41	4	692	4	FOLH1B	11	89421805	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	19243642	89421805	45584711	41	42576											
PGR	5241	broad.mit.edu	37	11	100999089	100999089	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	-	100999089	T	-	100999089	7	5	697	1	0	1	0	1	0	0	0	0	11812	1609	56	0	2120	0	PGR	11	100999089	Frame_Shift_Del	DEL	T	TCGA-KN-8422-01A-11D-2310-10	11577284	100999089	34007427	42	42577											
CEP164	22897	hgsc.bcm.edu;mdanderson.org	37	11	117214946	117214946	+	Silent	SNP	G	G	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	117214946	G	T	117214946	2	4	697	1	0	0	0	0	0	0	0	1	3251	1335	47	4		4	CEP164	11	117214946	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10	16215857	117214946	17791570	43	42578											
TAS2R31	259290	mdanderson.org	37	12	11183066	11183066	+	Missense_Mutation	SNP	A	A	T	rs138895028		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	11183066	A	T	11183066	3	4	697	1	0	0	0	0	1	0	0	0	15586	14	1	5	64	5	TAS2R31	12	11183066	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10		11183066	122668829	44	42579											
TAS2R31	259290	mdanderson.org	37	12	11183496	11183496	+	Missense_Mutation	SNP	T	T	C	rs199736450		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	11183496	T	C	11183496	3	2	697	1	0	0	0	0	1	0	0	0	15586	1435	50	3	494	3	TAS2R31	12	11183496	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	430	11183496	122668399	45	42580											
MLL2	8085	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	49432249	49432249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	49432249	C	A	49432249	3	1	697	1	0	0	0	0	1	0	0	0	9628	507	18	4	7807	4	MLL2	12	49432249	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	38248753	49432249	84419646	46	42581											
SMARCC2	6601	hgsc.bcm.edu	37	12	56565715	56565715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	56565715	C	T	56565715	3	4	697	1	0	0	0	0	1	0	0	0	14789	864	30	2	1840	2	SMARCC2	12	56565715	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	7133466	56565715	77286180	47	42582											
MPHOSPH8	54737	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	13	20220943	20220943	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	20220943	G	C	20220943	3	2	697	1	0	0	0	0	1	0	0	0	9734	943	33	4	740	4	MPHOSPH8	13	20220943	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10		20220943	94948935	48	42583											
SRP14	6727	broad.mit.edu	37	15	40328594	40328595	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	GGG	40328595	-	GGG	40328594	7	5	697	1	0	1	1	0	0	0	0	0	15165	175	7	0	63	0	SRP14	15	40328594	In_Frame_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10		40328594	62202798	49	42584											
GOLGA6A	342096	mdanderson.org	37	15	74363307	74363307	+	Missense_Mutation	SNP	C	C	T	rs2740420		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	74363307	C	T	74363307	3	4	697	1	0	0	0	0	1	0	0	0	6564	826	29	2	59	2	GOLGA6A	15	74363307	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	34034713	74363307	28168085	50	42585											
RGMA	56963	broad.mit.edu	37	15	93588500	93588500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	93588500	C	T	93588500	3	4	697	1	0	0	0	0	1	0	0	0	13293	536	19	1	275	1	RGMA	15	93588500	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	19225193	93588500	8942892	51	42586											
SRRM2	23524	broad.mit.edu	37	16	2818052	2818053	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	2818053	-	C	2818052	7	5	697	1	0	1	1	0	0	0	0	0	15181	304	11	0	7561	0	SRRM2	16	2818052	Frame_Shift_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10		2818052	87536701	52	42587											
MEFV	4210	mdanderson.org	37	16	3304654	3304654	+	Silent	SNP	T	T	C	rs224224	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	3304654	T	C	3304654	2	2	697	1	0	0	0	0	0	0	0	1	9466	1538	54	3		3	MEFV	16	3304654	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	486602	3304654	87050099	53	42588											
FAM86A	196483	mdanderson.org	37	16	5141852	5141852	+	Silent	SNP	C	C	T	rs117562636	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	5141852	C	T	5141852	2	4	697	1	0	0	0	0	0	0	0	1	5650	755	27	1		1	FAM86A	16	5141852	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	1837198	5141852	85212901	54	42589	581	2									
FAM86A	196483	mdanderson.org	37	16	5141855	5141855	+	Silent	SNP	T	T	C	rs116976665	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	5141855	T	C	5141855	2	2	697	1	0	0	0	0	0	0	0	1	5650	1606	56	3		3	FAM86A	16	5141855	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	3	5141855	85212898	55	42590	581	2									
CLEC18B	497190	mdanderson.org	37	16	74444923	74444923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	74444923	C	T	74444923	3	4	697	1	0	0	0	0	1	0	0	0	3505	652	23	1	393	1	CLEC18B	16	74444923	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	69303068	74444923	15909830	56	42591											
WDR59	79726	mdanderson.org	37	16	74942828	74942828	+	Missense_Mutation	SNP	A	A	G	rs201965155	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	74942828	A	G	74942828	3	3	697	1	0	0	0	0	1	0	0	0	17320	275	10	3	1274	3	WDR59	16	74942828	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	497905	74942828	15411925	57	42592			2	116		3	3	38	N	T_A	3.405148e-09
WDR59	79726	mdanderson.org	37	16	74942844	74942844	+	Silent	SNP	T	T	C	rs147993698	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	74942844	T	C	74942844	2	2	697	1	0	0	0	0	0	0	0	1	17320	1799	63	3		3	WDR59	16	74942844	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	16	74942844	15411909	58	42593			2	116		3	3	38	N	T_A	3.405148e-09
WDR59	79726	mdanderson.org	37	16	74942865	74942865	+	Silent	SNP	T	T	C	rs141093453	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	74942865	T	C	74942865	2	2	697	1	0	0	0	0	0	0	0	1	17320	1393	49	3		3	WDR59	16	74942865	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	21	74942865	15411888	59	42594			2	116		3	3	38	N	T_A	3.405148e-09
CDH13	1012	broad.mit.edu	37	16	83636109	83636110	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	83636110	-	G	83636109	7	5	697	1	0	1	1	0	0	0	0	0	3101	1567	55	0	1041	0	CDH13	16	83636109	Frame_Shift_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10	8693244	83636109	6718644	60	42595											
SPAG5	10615	broad.mit.edu	37	17	26919762	26919762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	26919762	T	C	26919762	3	2	697	1	0	0	0	0	1	0	0	0	14994	1667	58	3	3169	3	SPAG5	17	26919762	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10		26919762	54275448	61	42596											
ADCYAP1	116	mdanderson.org	37	18	907710	907710	+	Missense_Mutation	SNP	A	A	G	rs2856966	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	907710	A	G	907710	3	3	697	1	0	0	0	0	1	0	0	0	302	333	12	3	167	3	ADCYAP1	18	907710	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10		907710	77169538	62	42597											
MAST1	22983	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	12985463	12985463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	12985463	C	A	12985463	3	1	697	1	0	0	0	0	1	0	0	0	9331	739	26	4	4594	4	MAST1	19	12985463	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10		12985463	46143520	63	42598											
MYO9B	4650	broad.mit.edu	37	19	17321179	17321179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	17321179	A	G	17321179	3	3	697	1	0	0	0	0	1	0	0	0	10092	304	11	3	5928	3	MYO9B	19	17321179	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	4335716	17321179	41807804	64	42599											
PSG9	5678	mdanderson.org	37	19	43763023	43763023	+	Missense_Mutation	SNP	A	A	G	rs1135905	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	43763023	A	G	43763023	3	3	697	1	0	0	0	0	1	0	0	0	12672	333	12	3	318	3	PSG9	19	43763023	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	26441844	43763023	15365960	65	42600											
TPRX1	284355	mdanderson.org	37	19	48305555	48305555	+	Missense_Mutation	SNP	G	G	A	rs147380237		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	48305555	G	A	48305555	3	1	697	1	0	0	0	0	1	0	0	0	16434	1116	39	1	526	1	TPRX1	19	48305555	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	4542532	48305555	10823428	66	42601											
SIGLEC14	100049587	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	19	52149193	52149193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	52149193	G	A	52149193	3	1	697	1	0	0	0	0	1	0	0	0	14322	1145	40	1	668	1	SIGLEC14	19	52149193	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	3843638	52149193	6979790	67	42602											
ZNF528	84436	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	52909852	52909852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	52909852	C	T	52909852	3	4	697	1	0	0	0	0	1	0	0	0	17981	710	25	2	237	2	ZNF528	19	52909852	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	760659	52909852	6219131	68	42603											
NLRP7	199713	hgsc.bcm.edu;mdanderson.org	37	19	55450827	55450827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	55450827	G	A	55450827	3	1	697	1	0	0	0	0	1	0	0	0	10489	1000	35	2	1785	2	NLRP7	19	55450827	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	2540975	55450827	3678156	69	42604											
GART	2618	mdanderson.org	37	21	34903861	34903861	+	Missense_Mutation	SNP	C	C	A	rs142038738	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	A	34903861	C	A	34903861	3	1	697	1	0	0	0	0	1	0	0	0	6250	912	32	4	2573	4	GART	21	34903861	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10		34903861	13226034	70	42605											
SLC19A1	6573	mdanderson.org	37	21	46951556	46951556	+	Silent	SNP	A	A	G	rs12659	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	G	46951556	A	G	46951556	2	3	697	1	0	0	0	0	0	0	0	1	14441	175	7	3		3	SLC19A1	21	46951556	Silent	SNP	A	TCGA-KN-8422-01A-11D-2310-10	12047695	46951556	1178339	71	42606											
FAM9A	171482	broad.mit.edu	37	X	8767124	8767124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	T	8767124	C	T	8767124	3	4	697	1	0	0	0	0	1	0	0	0	5666	768	27	1	923	1	FAM9A	23	8767124	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10		8767124	146503436	72	42607											
FAM122B	159090	broad.mit.edu	37	X	133930385	133930386	+	Splice_Site	INS	-	-	C	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1	C	133930386	-	C	133930385	8	5	697	1	0	1	1	0	0	0	1	0	5424	1217	42	0		0	FAM122B	23	133930385	Splice_Site	INS	-	TCGA-KN-8422-01A-11D-2310-10	125163261	133930385	21340175	73	42608											
NRD1	4898	mdanderson.org	37	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	52306079	T	A	52306079	3	1	698	1	0	0	0	0	1	0	0	0	10652	1551	54	5	3338	5	NRD1	1	52306079	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10		52306079	196944542	1	42609											
MTX1	4580	mdanderson.org	37	1	155178782	155178782	+	Missense_Mutation	SNP	A	A	T	rs760077		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	155178782	A	T	155178782	3	4	698	1	0	0	0	0	1	0	0	0	9974	159	6	5	189	5	MTX1	1	155178782	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	102872703	155178782	94071839	2	42610											
HNRNPU	3192	broad.mit.edu	37	1	245022136	245022136	+	Silent	SNP	T	T	C	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	245022136	T	C	245022136	2	2	698	1	0	0	0	0	0	0	0	1	7280	1606	56	3		3	HNRNPU	1	245022136	Silent	SNP	T	TCGA-KN-8423-01A-11D-2310-10	89843354	245022136	4228485	3	42611											
KYNU	8942	broad.mit.edu	37	2	143718278	143718278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	143718278	T	C	143718278	3	2	698	1	0	0	0	0	1	0	0	0	8594	1696	59	3	694	3	KYNU	2	143718278	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10		143718278	99481095	4	42612											
DNAJB2	3300	hgsc.bcm.edu	37	2	220149586	220149586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	220149586	G	T	220149586	3	4	698	1	0	0	0	0	1	0	0	0	4622	991	35	4	882	4	DNAJB2	2	220149586	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10	76431308	220149586	23049787	5	42613											
DAZL	1618	broad.mit.edu	37	3	16638275	16638275	+	Silent	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	16638275	A	G	16638275	2	3	698	1	0	0	0	0	0	0	0	1	4248	407	15	3		3	DAZL	3	16638275	Silent	SNP	A	TCGA-KN-8423-01A-11D-2310-10		16638275	181384155	6	42614											
LEKR1	389170	broad.mit.edu	37	3	156745919	156745919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	156745919	A	G	156745919	3	3	698	1	0	0	0	0	1	0	0	0	8724	64	3	3	1438	3	LEKR1	3	156745919	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	140107644	156745919	41276511	7	42615											
HTT	3064	broad.mit.edu	37	4	3234985	3234985	+	Silent	SNP	C	C	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	3234985	C	G	3234985	2	3	698	1	0	0	0	0	0	0	0	1	7464	900	32	4		4	HTT	4	3234985	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10		3234985	187919291	8	42616											
DSPP	1834	mdanderson.org	37	4	88536448	88536448	+	Silent	SNP	C	C	T	rs142168734		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	88536448	C	T	88536448	2	4	698	1	0	0	0	0	0	0	0	1	4784	477	17	2		2	DSPP	4	88536448	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	85301463	88536448	102617828	9	42617	582	4									
DSPP	1834	mdanderson.org	37	4	88536451	88536451	+	Silent	SNP	C	C	T	rs141946550		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	88536451	C	T	88536451	2	4	698	1	0	0	0	0	0	0	0	1	4784	709	25	2		2	DSPP	4	88536451	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	3	88536451	102617825	10	42618	582	4									
DSPP	1834	mdanderson.org	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	88536457	T	C	88536457	2	2	698	1	0	0	0	0	0	0	0	1	4784	1403	49	3		3	DSPP	4	88536457	Silent	SNP	T	TCGA-KN-8423-01A-11D-2310-10	6	88536457	102617819	11	42619	582	4									
DSPP	1834	mdanderson.org	37	4	88536460	88536460	+	Silent	SNP	C	C	T	rs199691318		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	88536460	C	T	88536460	2	4	698	1	0	0	0	0	0	0	0	1	4784	709	25	2		2	DSPP	4	88536460	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	3	88536460	102617816	12	42620	582	4									
UGT3A1	133688	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	35957478	35957478	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	35957478	A	T	35957478	3	4	698	1	0	0	0	0	1	0	0	0	16975	275	10	5	696	5	UGT3A1	5	35957478	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		35957478	144957782	13	42621											
RASGRF2	5924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	80504195	80504195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	80504195	A	G	80504195	3	3	698	1	0	0	0	0	1	0	0	0	13086	333	12	3	3180	3	RASGRF2	5	80504195	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	44546717	80504195	100411065	14	42622											
HNRNPA0	10949	ucsc.edu;bcgsc.ca	37	5	137089608	137089608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	137089608	A	G	137089608	3	3	698	1	0	0	0	0	1	0	0	0	7263	72	3	3	773	3	HNRNPA0	5	137089608	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	56585413	137089608	43825652	15	42623											
HAVCR1	26762	ucsc.edu	37	5	156479568	156479568	+	Silent	SNP	C	C	T	rs10068551		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	156479568	C	T	156479568	2	4	698	1	0	0	0	0	0	0	0	1	6980	871	31	1		1	HAVCR1	5	156479568	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	19389960	156479568	24435692	16	42624											
HLA-DRB1	3123	mdanderson.org	37	6	32549587	32549587	+	Silent	SNP	T	T	G	rs201597010	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	32549587	T	G	32549587	2	3	698	1	0	0	0	0	0	0	0	1	7215	1799	63	5		5	HLA-DRB1	6	32549587	Silent	SNP	T	TCGA-KN-8423-01A-11D-2310-10		32549587	138565480	17	42625											
HERPUD2	64224	ucsc.edu	37	7	35678074	35678074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	35678074	T	C	35678074	3	2	698	1	0	0	0	0	1	0	0	0	7071	1667	58	3	733	3	HERPUD2	7	35678074	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10		35678074	123460589	18	42626											
UPP1	7378	broad.mit.edu;hgsc.bcm.edu	37	7	48147910	48147911	+	Frame_Shift_Ins	INS	-	-	GGCT	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	GGCT	48147911	-	GGCT	48147910	7	5	698	1	0	1	1	0	0	0	0	0	17024	759	27	0	915	0	UPP1	7	48147910	Frame_Shift_Ins	INS	-	TCGA-KN-8423-01A-11D-2310-10	12469836	48147910	110990753	19	42627	583	2									
UPP1	7378	bcgsc.ca	37	7	48147911	48147912	+	Frame_Shift_Ins	INS	-	-	GGCT	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	GGCT	48147912	-	GGCT	48147911	7	5	698	1	0	1	1	0	0	0	0	0	17024	1116	39	0	916	0	UPP1	7	48147911	Frame_Shift_Ins	INS	-	TCGA-KN-8423-01A-11D-2310-10	1	48147911	110990752	20	42628	583	2									
IQUB	154865	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	123119977	123119977	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	123119977	C	G	123119977	3	3	698	1	0	0	0	0	1	0	0	0	7827	797	28	4	1117	4	IQUB	7	123119977	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	74972066	123119977	36018686	21	42629											
NOBOX	135935	bcgsc.ca	37	7	144096937	144096937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	144096937	C	T	144096937	3	4	698	1	0	0	0	0	1	0	0	0	10519	652	23	1	1028	1	NOBOX	7	144096937	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	20976960	144096937	15041726	22	42630											
PCMTD1	115294	bcgsc.ca	37	8	52733143	52733143	+	Missense_Mutation	SNP	A	A	G	rs111785933		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	52733143	A	G	52733143	3	3	698	1	0	0	0	0	1	0	0	0	11593	43	2	3	235	3	PCMTD1	8	52733143	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		52733143	93630879	23	42631											
EYA1	2138	broad.mit.edu	37	8	72129213	72129213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	72129213	C	T	72129213	3	4	698	1	0	0	0	0	1	0	0	0	5330	661	23	1	616	1	EYA1	8	72129213	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	19396070	72129213	74234809	24	42632											
PRSS3	5646	mdanderson.org	37	9	33794840	33794840	+	Silent	SNP	G	G	A	rs10117993	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	33794840	G	A	33794840	2	1	698	1	0	0	0	0	0	0	0	1	12632	1102	38	1		1	PRSS3	9	33794840	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10		33794840	107418591	25	42633											
SYK	6850	bcgsc.ca	37	9	93650875	93650875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	93650875	A	G	93650875	3	3	698	1	0	0	0	0	1	0	0	0	15450	333	12	3	1847	3	SYK	9	93650875	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	59856035	93650875	47562556	26	42634											
RC3H2	54542	broad.mit.edu	37	9	125620200	125620200	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	125620200	A	G	125620200	5	3	698	1	0	0	0	0	0	0	1	0	13180	405	14	3	1233	3	RC3H2	9	125620200	Splice_Site	SNP	A	TCGA-KN-8423-01A-11D-2310-10	31969325	125620200	15593231	27	42635											
NMT2	9397	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	10	15172216	15172216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	15172216	C	T	15172216	3	4	698	1	0	0	0	0	1	0	0	0	10511	913	32	2	705	2	NMT2	10	15172216	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10		15172216	120362531	28	42636											
FAM171A1	221061	bcgsc.ca	37	10	15254967	15254967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	15254967	T	C	15254967	3	2	698	1	0	0	0	0	1	0	0	0	5494	1609	56	3	56	3	FAM171A1	10	15254967	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	82751	15254967	120279780	29	42637											
GPRIN2	9721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	46998903	46998903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	46998903	C	T	46998903	3	4	698	1	0	0	0	0	1	0	0	0	6737	652	23	1	25	1	GPRIN2	10	46998903	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	31743936	46998903	88535844	30	42638											
PRLHR	2834	mdanderson.org	37	10	120353899	120353899	+	Silent	SNP	C	C	A	rs116062593	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	120353899	C	A	120353899	2	1	698	1	0	0	0	0	0	0	0	1	12540	465	17	4		4	PRLHR	10	120353899	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	73354996	120353899	15180848	31	42639											
PAOX	196743	ucsc.edu;bcgsc.ca	37	10	135193598	135193598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	135193598	A	G	135193598	3	3	698	1	0	0	0	0	1	0	0	0	11430	247	9	3	283	3	PAOX	10	135193598	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	14839699	135193598	341149	32	42640											
MUC6	4588	mdanderson.org	37	11	1016606	1016606	+	Silent	SNP	T	T	C	rs148905794		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	1016606	T	C	1016606	2	2	698	1	0	0	0	0	0	0	0	1	9987	1567	55	3		3	MUC6	11	1016606	Silent	SNP	T	TCGA-KN-8423-01A-11D-2310-10		1016606	133989910	33	42641											
MUC2	4583	broad.mit.edu	37	11	1092849	1092849	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	-	1092849	G	-	1092849	7	5	698	1	0	1	0	1	0	0	0	0	9982	933	33	0	4786	0	MUC2	11	1092849	Frame_Shift_Del	DEL	G	TCGA-KN-8423-01A-11D-2310-10	76243	1092849	133913667	34	42642											
KRTAP5-8	57830	mdanderson.org	37	11	71249605	71249605	+	Silent	SNP	C	C	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	71249605	C	T	71249605	2	4	698	1	0	0	0	0	0	0	0	1	8574	718	25	2		2	KRTAP5-8	11	71249605	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	70156756	71249605	63756911	35	42643											
KIRREL3	84623	broad.mit.edu	37	11	126396466	126396466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	126396466	C	T	126396466	3	4	698	1	0	0	0	0	1	0	0	0	8333	652	23	1	2253	1	KIRREL3	11	126396466	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	55146861	126396466	8610050	36	42644											
RNF10	9921	hgsc.bcm.edu	37	12	120972755	120972755	+	Silent	SNP	G	G	A	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	120972755	G	A	120972755	2	1	698	1	0	0	0	0	0	0	0	1	13435	1020	36	2		2	RNF10	12	120972755	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10		120972755	12879140	37	42645											
EP400	57634	mdanderson.org	37	12	132547141	132547141	+	Silent	SNP	G	G	A	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	132547141	G	A	132547141	2	1	698	1	0	0	0	0	0	0	0	1	5151	962	34	2		2	EP400	12	132547141	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10	11574386	132547141	1304754	38	42646											
CSNK1A1L	122011	broad.mit.edu	37	13	37678605	37678605	+	Silent	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	37678605	A	G	37678605	2	3	698	1	0	0	0	0	0	0	0	1	3953	273	10	3		3	CSNK1A1L	13	37678605	Silent	SNP	A	TCGA-KN-8423-01A-11D-2310-10		37678605	77491273	39	42647											
MYCBP2	23077	hgsc.bcm.edu;bcgsc.ca	37	13	77714270	77714270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	77714270	G	A	77714270	3	1	698	1	0	0	0	0	1	0	0	0	10025	1087	38	1	6738	1	MYCBP2	13	77714270	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10	40035665	77714270	37455608	40	42648											
TPP2	7174	ucsc.edu	37	13	103288039	103288039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	103288039	A	G	103288039	3	3	698	1	0	0	0	0	1	0	0	0	16424	217	8	3	1542	3	TPP2	13	103288039	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	25573769	103288039	11881839	41	42649											
ACIN1	22985	mdanderson.org	37	14	23548793	23548793	+	Missense_Mutation	SNP	C	C	T	rs80007670	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	23548793	C	T	23548793	3	4	698	1	0	0	0	0	1	0	0	0	142	536	19	1	2303	1	ACIN1	14	23548793	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10		23548793	83800747	42	42650											
MLH3	27030	broad.mit.edu	37	14	75513814	75513814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	75513814	T	C	75513814	3	2	698	1	0	0	0	0	1	0	0	0	9625	1609	56	3	1864	3	MLH3	14	75513814	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	51965021	75513814	31835726	43	42651											
FLVCR2	55640	mdanderson.org	37	14	76045417	76045418	+	Missense_Mutation	DNP	GG	GG	CA	rs143304751	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	CA	76045418	GG	CA	76045417	3	2	698	1	0	0	0	0	1	0	0	0	5953	1103	39	4	104	4	FLVCR2	14	76045417	Missense_Mutation	DNP	GG	TCGA-KN-8423-01A-11D-2310-10	531603	76045417	31304123	44	42652											
HSP90AA1	3320	mdanderson.org	37	14	102551272	102551272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	102551272	C	T	102551272	3	4	698	1	0	0	0	0	1	0	0	0	7408	922	32	2	1499	2	HSP90AA1	14	102551272	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	26505855	102551272	4798268	45	42653											
AHNAK2	113146	mdanderson.org	37	14	105411957	105411957	+	Silent	SNP	G	G	A	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	105411957	G	A	105411957	2	1	698	1	0	0	0	0	0	0	0	1	415	1136	40	1		1	AHNAK2	14	105411957	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10	2860685	105411957	1937583	46	42654			1	117		2	2	15	N	T_G	2.668204e-05
AHNAK2	113146	mdanderson.org	37	14	105411971	105411971	+	Missense_Mutation	SNP	T	T	C	rs28737397		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	105411971	T	C	105411971	3	2	698	1	0	0	0	0	1	0	0	0	415	1580	55	3	7574	3	AHNAK2	14	105411971	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	14	105411971	1937569	47	42655			1	117		2	2	15	N	T_G	2.668204e-05
MTA1	9112	bcgsc.ca	37	14	105932850	105932850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	105932850	T	C	105932850	3	2	698	1	0	0	0	0	1	0	0	0	9915	1667	58	3	1778	3	MTA1	14	105932850	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	520879	105932850	1416690	48	42656											
MGA	23269	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	15	42052530	42052530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	42052530	A	G	42052530	3	3	698	1	0	0	0	0	1	0	0	0	9547	101	4	3	7275	3	MGA	15	42052530	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		42052530	60478862	49	42657											
METTL9	51108	hgsc.bcm.edu	37	16	21611112	21611112	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	21611112	A	T	21611112	3	4	698	1	0	0	0	0	1	0	0	0	9515	295	11	5	60	5	METTL9	16	21611112	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		21611112	68743641	50	42658											
FHOD1	29109	bcgsc.ca	37	16	67271285	67271285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	67271285	T	C	67271285	3	2	698	1	0	0	0	0	1	0	0	0	5889	1681	58	3	2700	3	FHOD1	16	67271285	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	45660173	67271285	23083468	51	42659											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7577566	7577566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	7577566	T	C	7577566	3	2	698	1	0	0	0	0	1	0	0	0	16393	1754	61	3	575	3	TP53	17	7577566	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10		7577566	73617644	52	42660											
ZNF555	148254	broad.mit.edu;hgsc.bcm.edu	37	19	2853382	2853382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	2853382	G	A	2853382	3	1	698	1	0	0	0	0	1	0	0	0	17998	1058	37	1	1333	1	ZNF555	19	2853382	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10		2853382	56275601	53	42661											
MUC16	94025	mdanderson.org	37	19	9005616	9005616	+	Missense_Mutation	SNP	G	G	T	rs78831402		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	9005616	G	T	9005616	3	4	698	1	0	0	0	0	1	0	0	0	9980	1348	47	4	3889	4	MUC16	19	9005616	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10	6152234	9005616	50123367	54	42662											
MUC16	94025	mdanderson.org	37	19	9018508	9018508	+	Missense_Mutation	SNP	T	T	G	rs74488264		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	9018508	T	G	9018508	3	3	698	1	0	0	0	0	1	0	0	0	9980	1792	62	5	6101	5	MUC16	19	9018508	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	12892	9018508	50110475	55	42663											
ZNF20	7568	broad.mit.edu	37	19	12244276	12244276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	12244276	A	G	12244276	3	3	698	1	0	0	0	0	1	0	0	0	17773	72	3	3	877	3	ZNF20	19	12244276	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	3225768	12244276	46884707	56	42664											
CRTC1	23373	broad.mit.edu	37	19	18879483	18879483	+	Silent	SNP	C	C	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	18879483	C	T	18879483	2	4	698	1	0	0	0	0	0	0	0	1	3901	581	21	2		2	CRTC1	19	18879483	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	6635207	18879483	40249500	57	42665											
GAPDHS	26330	hgsc.bcm.edu	37	19	36033313	36033313	+	Splice_Site	SNP	T	T	C	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	C	36033313	T	C	36033313	5	2	698	1	0	0	0	0	0	0	1	0	6244	1652	57	3	560	3	GAPDHS	19	36033313	Splice_Site	SNP	T	TCGA-KN-8423-01A-11D-2310-10	17153830	36033313	23095670	58	42666											
PTPRA	5786	broad.mit.edu;bcgsc.ca	37	20	2998555	2998555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	2998555	A	G	2998555	3	3	698	1	0	0	0	0	1	0	0	0	12808	72	3	3	1075	3	PTPRA	20	2998555	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		2998555	60026965	59	42667											
NCOA3	8202	mdanderson.org	37	20	46279863	46279863	+	Silent	SNP	G	G	A	rs141008500	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	46279863	G	A	46279863	2	1	698	1	0	0	0	0	0	0	0	1	10237	962	34	2		2	NCOA3	20	46279863	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10	43281308	46279863	16745657	60	42668											
KRTAP10-2	386679	mdanderson.org	37	21	45970772	45970772	+	Silent	SNP	A	A	G	rs76021731	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	G	45970772	A	G	45970772	2	3	698	1	0	0	0	0	0	0	0	1	8516	175	7	3		3	KRTAP10-2	21	45970772	Silent	SNP	A	TCGA-KN-8423-01A-11D-2310-10		45970772	2159123	61	42669	584	2									
KRTAP10-2	386679	mdanderson.org	37	21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A	rs76536096	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	A	45970774	G	A	45970774	3	1	698	1	0	0	0	0	1	0	0	0	8516	1203	42	2	203	2	KRTAP10-2	21	45970774	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10	2	45970774	2159121	62	42670	584	2									
NEFH	4744	ucsc.edu;mdanderson.org	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	29885594	A	T	29885594	2	4	698	1	0	0	0	0	0	0	0	1	10321	175	7	5		5	NEFH	22	29885594	Silent	SNP	A	TCGA-KN-8423-01A-11D-2310-10		29885594	21418972	63	42671											
ENTHD1	150350	broad.mit.edu	37	22	40161248	40161248	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7	T	40161248	A	T	40161248	3	4	698	1	0	0	0	0	1	0	0	0	5139	333	12	5	632	5	ENTHD1	22	40161248	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	10275654	40161248	11143318	64	42672											
LOC440563	0	mdanderson.org	37	1	13183530	13183530	+	Missense_Mutation	SNP	A	A	G	rs71253869		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	13183530	A	G	13183530	3	3	699	1	0	0	0	0	1	0	0	0	8886	72	3	3	542	3	LOC440563	1	13183530	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		13183530	236067091	1	42673											
ZSCAN20	7579	bcgsc.ca	37	1	33958892	33958892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	33958892	A	G	33958892	3	3	699	1	0	0	0	0	1	0	0	0	18244	391	14	3	1572	3	ZSCAN20	1	33958892	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	20775362	33958892	215291729	2	42674											
CLCA1	1179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	86954776	86954776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	86954776	A	T	86954776	3	4	699	1	0	0	0	0	1	0	0	0	3459	130	5	5	1310	5	CLCA1	1	86954776	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	52995884	86954776	162295845	3	42675											
WNT2B	7482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	113062943	113062943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	113062943	A	G	113062943	3	3	699	1	0	0	0	0	1	0	0	0	17399	15	1	3	1139	3	WNT2B	1	113062943	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	26108167	113062943	136187678	4	42676											
RPTN	126638	broad.mit.edu	37	1	152127952	152127952	+	Silent	SNP	T	T	C	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	152127952	T	C	152127952	2	2	699	1	0	0	0	0	0	0	0	1	13677	1606	56	3		3	RPTN	1	152127952	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	39065009	152127952	97122669	5	42677											
KIRREL	55243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	158056511	158056511	+	Silent	SNP	G	G	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	158056511	G	A	158056511	2	1	699	1	0	0	0	0	0	0	0	1	8331	933	33	2		2	KIRREL	1	158056511	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	5928559	158056511	91194110	6	42678											
OR6N2	81442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	158746533	158746533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	158746533	A	G	158746533	3	3	699	1	0	0	0	0	1	0	0	0	11214	101	4	3	63	3	OR6N2	1	158746533	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	690022	158746533	90504088	7	42679											
C1orf27	54953	ucsc.edu	37	1	186388183	186388183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	186388183	T	C	186388183	3	2	699	1	0	0	0	0	1	0	0	0	2038	1435	50	3	1390	3	C1orf27	1	186388183	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	27641650	186388183	62862438	8	42680											
KLHL12	59349	bcgsc.ca	37	1	202888918	202888918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	202888918	T	C	202888918	3	2	699	1	0	0	0	0	1	0	0	0	8375	1783	62	3	1432	3	KLHL12	1	202888918	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	16500735	202888918	46361703	9	42681											
MARCO	8685	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	119731958	119731958	+	Silent	SNP	G	G	A	rs140866852		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	119731958	G	A	119731958	2	1	699	1	0	0	0	0	0	0	0	1	9318	1074	38	1		1	MARCO	2	119731958	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10		119731958	123467415	10	42682											
LRP2	4036	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	170060758	170060758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	170060758	A	G	170060758	3	3	699	1	0	0	0	0	1	0	0	0	8963	188	7	3	6380	3	LRP2	2	170060758	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	50328800	170060758	73138615	11	42683											
TTN	7273	broad.mit.edu	37	2	179497287	179497287	+	Silent	SNP	T	T	C	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	179497287	T	C	179497287	2	2	699	1	0	0	0	0	0	0	0	1	16747	1606	56	3		3	TTN	2	179497287	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	9436529	179497287	63702086	12	42684											
ERBB4	2066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	212578299	212578299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	212578299	T	C	212578299	3	2	699	1	0	0	0	0	1	0	0	0	5211	1435	50	3	3052	3	ERBB4	2	212578299	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	33081012	212578299	30621074	13	42685											
ALPPL2	251	mdanderson.org	37	2	233271799	233271799	+	Missense_Mutation	SNP	C	C	G	rs146369944	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	233271799	C	G	233271799	3	3	699	1	0	0	0	0	1	0	0	0	549	595	21	4	106	4	ALPPL2	2	233271799	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	20693500	233271799	9927574	14	42686											
CAPN10	11132	mdanderson.org	37	2	241526428	241526428	+	Missense_Mutation	SNP	C	C	G	rs138005500		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	241526428	C	G	241526428	3	3	699	1	0	0	0	0	1	0	0	0	2625	796	28	4	102	4	CAPN10	2	241526428	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	8254629	241526428	1672945	15	42687											
ZNF385D	79750	bcgsc.ca	37	3	21462711	21462711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	21462711	A	G	21462711	3	3	699	1	0	0	0	0	1	0	0	0	17890	362	13	3	8	3	ZNF385D	3	21462711	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		21462711	176559719	16	42688											
XYLB	9942	hgsc.bcm.edu;mdanderson.org	37	3	38388378	38388378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	38388378	C	T	38388378	3	4	699	1	0	0	0	0	1	0	0	0	17474	884	31	1	21	1	XYLB	3	38388378	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	16925667	38388378	159634052	17	42689											
VPRBP	9730	broad.mit.edu;mdanderson.org	37	3	51475088	51475088	+	Splice_Site	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	51475088	C	T	51475088	5	4	699	1	0	0	0	0	0	0	1	0	17197	811	28	2	3402	2	VPRBP	3	51475088	Splice_Site	SNP	C	TCGA-KN-8424-01A-11D-2310-10	13086710	51475088	146547342	18	42690											
ALAS1	211	broad.mit.edu	37	3	52233380	52233380	+	Silent	SNP	C	C	A	rs182395582		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	52233380	C	A	52233380	2	1	699	1	0	0	0	0	0	0	0	1	484	581	21	4		4	ALAS1	3	52233380	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10	758292	52233380	145789050	19	42691											
FAM194A	131831	broad.mit.edu	37	3	150421569	150421569	+	Silent	SNP	T	T	C	rs142916868	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	150421569	T	C	150421569	2	2	699	1	0	0	0	0	0	0	0	1	5530	1606	56	3		3	FAM194A	3	150421569	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	98188189	150421569	47600861	20	42692											
EIF4G1	1981	broad.mit.edu	37	3	184035256	184035256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	184035256	T	C	184035256	3	2	699	1	0	0	0	0	1	0	0	0	5038	1551	54	3	305	3	EIF4G1	3	184035256	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	33613687	184035256	13987174	21	42693											
MUC4	4585	mdanderson.org	37	3	195510169	195510169	+	Missense_Mutation	SNP	G	G	A	rs201935809		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	195510169	G	A	195510169	3	1	699	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195510169	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	11474913	195510169	2512261	22	42694											
MUC4	4585	mdanderson.org	37	3	195511534	195511534	+	Missense_Mutation	SNP	T	T	G	rs75459784	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	195511534	T	G	195511534	3	3	699	1	0	0	0	0	1	0	0	0	9985	1464	51	5		5	MUC4	3	195511534	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	1365	195511534	2510896	23	42695											
SHROOM3	57619	mdanderson.org	37	4	77662125	77662125	+	Silent	SNP	C	C	T	rs36036308		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	77662125	C	T	77662125	2	4	699	1	0	0	0	0	0	0	0	1	14308	610	22	2		2	SHROOM3	4	77662125	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10		77662125	113492151	24	42696											
GZMK	3003	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	54329718	54329718	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	54329718	G	A	54329718	4	1	699	1	0	0	0	0	0	1	0	0	6925	1183	41	2	777	2	GZMK	5	54329718	Nonsense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10		54329718	126585542	25	42697											
PCDHA8	56140	mdanderson.org	37	5	140222641	140222641	+	Missense_Mutation	SNP	A	A	G	rs6580012	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	140222641	A	G	140222641	3	3	699	1	0	0	0	0	1	0	0	0	11537	131	5	3	1737	3	PCDHA8	5	140222641	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	85892923	140222641	40692619	26	42698											
PCDHA10	56139	bcgsc.ca	37	5	140236871	140236871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	140236871	A	G	140236871	3	3	699	1	0	0	0	0	1	0	0	0	11527	275	10	3	1240	3	PCDHA10	5	140236871	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	14230	140236871	40678389	27	42699											
STC2	8614	broad.mit.edu	37	5	172750382	172750382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	172750382	G	T	172750382	3	4	699	1	0	0	0	0	1	0	0	0	15288	1319	46	4	570	4	STC2	5	172750382	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	32513511	172750382	8164878	28	42700											
DSP	1832	ucsc.edu	37	6	7572208	7572208	+	Missense_Mutation	SNP	A	A	G	rs151049942	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	7572208	A	G	7572208	3	3	699	1	0	0	0	0	1	0	0	0	4783	410	15	3	2095	3	DSP	6	7572208	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		7572208	163542859	29	42701											
MDC1	9656	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	6	30672144	30672144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	30672144	C	A	30672144	3	1	699	1	0	0	0	0	1	0	0	0	9410	478	17	4	1477	4	MDC1	6	30672144	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	23099936	30672144	140442923	30	42702											
HLA-C	3107	mdanderson.org	37	6	31239049	31239049	+	Silent	SNP	G	G	T	rs1065406	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	31239049	G	T	31239049	2	4	699	1	0	0	0	0	0	0	0	1	7204	1103	39	4		4	HLA-C	6	31239049	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	566905	31239049	139876018	31	42703			1	118		2	2	12	N	G_A	3.233494e-05
HLA-C	3107	mdanderson.org	37	6	31239060	31239060	+	Missense_Mutation	SNP	A	A	G	rs2308574	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	31239060	A	G	31239060	3	3	699	1	0	0	0	0	1	0	0	0	7204	391	14	3	715	3	HLA-C	6	31239060	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	11	31239060	139876007	32	42704			1	118		2	2	12	N	G_A	3.233494e-05
HSP90AB1	3326	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	6	44218791	44218791	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	44218791	T	G	44218791	3	3	699	1	0	0	0	0	1	0	0	0	7409	1783	62	5	986	5	HSP90AB1	6	44218791	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	12979731	44218791	126896276	33	42705											
MAP3K4	4216	bcgsc.ca	37	6	161527702	161527702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	161527702	A	G	161527702	3	3	699	1	0	0	0	0	1	0	0	0	9259	72	3	3	4091	3	MAP3K4	6	161527702	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	117308911	161527702	9587365	34	42706											
DNAH11	8701	broad.mit.edu;hgsc.bcm.edu	37	7	21904162	21904165	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	-	21904165	AGAA	-	21904162	7	5	699	1	0	1	0	1	0	0	0	0	4601	296	11	0	11683	0	DNAH11	7	21904162	Frame_Shift_Del	DEL	AGAA	TCGA-KN-8424-01A-11D-2310-10		21904162	137234501	35	42707	585	2									
DNAH11	8701	bcgsc.ca	37	7	21904163	21904166	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	-	21904166	AGAA	-	21904163	7	5	699	1	0	1	0	1	0	0	0	0	4601	942	33	0	11684	0	DNAH11	7	21904163	Frame_Shift_Del	DEL	AGAA	TCGA-KN-8424-01A-11D-2310-10	1	21904163	137234500	36	42708	585	2									
NPSR1	387129	broad.mit.edu	37	7	34724247	34724247	+	Silent	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	34724247	A	G	34724247	2	3	699	1	0	0	0	0	0	0	0	1	10607	243	9	3		3	NPSR1	7	34724247	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	12820084	34724247	124414416	37	42709											
TNS3	64759	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	47451335	47451335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	47451335	C	G	47451335	3	3	699	1	0	0	0	0	1	0	0	0	16356	855	30	4	3700	4	TNS3	7	47451335	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	12727088	47451335	111687328	38	42710											
FGL2	10875	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	7	76828559	76828559	+	Silent	SNP	G	G	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	76828559	G	A	76828559	2	1	699	1	0	0	0	0	0	0	0	1	5880	1277	45	2		2	FGL2	7	76828559	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	29377224	76828559	82310104	39	42711											
KLHDC10	23008	hgsc.bcm.edu	37	7	129710524	129710524	+	Missense_Mutation	SNP	G	G	C	rs1062154		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	129710524	G	C	129710524	3	2	699	1	0	0	0	0	1	0	0	0	8362	1174	41	4	43	4	KLHDC10	7	129710524	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	52881965	129710524	29428139	40	42712											
OR2A5	393046	broad.mit.edu	37	7	143748124	143748124	+	Silent	SNP	G	G	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	143748124	G	A	143748124	2	1	699	1	0	0	0	0	0	0	0	1	10988	1074	38	1		1	OR2A5	7	143748124	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	14037600	143748124	15390539	41	42713											
MLL3	58508	hgsc.bcm.edu;mdanderson.org	37	7	152132844	152132845	+	Silent	DNP	CC	CC	TT	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	TT	152132845	CC	TT	152132844	2	4	699	1	0	0	0	0	0	0	0	1	9629	864	30	2		2	MLL3	7	152132844	Silent	DNP	CC	TCGA-KN-8424-01A-11D-2310-10	8384720	152132844	7005819	42	42714											
RNF32	140545	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	156437191	156437191	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	156437191	A	G	156437191	5	3	699	1	0	0	0	0	0	0	1	0	13501	434	15	3	20	3	RNF32	7	156437191	Splice_Site	SNP	A	TCGA-KN-8424-01A-11D-2310-10	4304347	156437191	2701472	43	42715											
TG	7038	hgsc.bcm.edu	37	8	134128949	134128949	+	Silent	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	134128949	C	T	134128949	2	4	699	1	0	0	0	0	0	0	0	1	15825	547	19	1		1	TG	8	134128949	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10		134128949	12235073	44	42716											
PSCA	8000	mdanderson.org	37	8	143763547	143763547	+	Silent	SNP	C	C	A	rs1045531	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	143763547	C	A	143763547	2	1	699	1	0	0	0	0	0	0	0	1	12655	900	32	4		4	PSCA	8	143763547	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10	9634598	143763547	2600475	45	42717											
SCRIB	23513	hgsc.bcm.edu	37	8	144874055	144874055	+	Silent	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	144874055	C	T	144874055	2	4	699	1	0	0	0	0	0	0	0	1	13950	639	23	1		1	SCRIB	8	144874055	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10	1110508	144874055	1489967	46	42718											
ADCK5	203054	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	145617189	145617189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	145617189	G	A	145617189	3	1	699	1	0	0	0	0	1	0	0	0	291	1116	39	1	1101	1	ADCK5	8	145617189	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	743134	145617189	746833	47	42719											
GLIS3	169792	broad.mit.edu	37	9	3856040	3856040	+	Silent	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	3856040	A	G	3856040	2	3	699	1	0	0	0	0	0	0	0	1	6454	59	3	3		3	GLIS3	9	3856040	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10		3856040	137357391	48	42720											
HABP4	22927	broad.mit.edu	37	9	99227725	99227725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	99227725	G	T	99227725	3	4	699	1	0	0	0	0	1	0	0	0	6946	1087	38	4	629	4	HABP4	9	99227725	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	95371685	99227725	41985706	49	42721											
NUP188	23511	broad.mit.edu	37	9	131730829	131730829	+	Silent	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	131730829	A	G	131730829	2	3	699	1	0	0	0	0	0	0	0	1	10765	40	2	3		3	NUP188	9	131730829	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	32503104	131730829	9482602	50	42722											
SNAPC4	6621	mdanderson.org	37	9	139272502	139272502	+	Silent	SNP	T	T	C	rs3812565	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	139272502	T	C	139272502	2	2	699	1	0	0	0	0	0	0	0	1	14850	1625	57	3		3	SNAPC4	9	139272502	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	7541673	139272502	1940929	51	42723											
ZNF438	220929	broad.mit.edu	37	10	31138701	31138701	+	Silent	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	31138701	A	G	31138701	2	3	699	1	0	0	0	0	0	0	0	1	17922	214	8	3		3	ZNF438	10	31138701	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10		31138701	104396046	52	42724											
JMJD1C	221037	bcgsc.ca	37	10	64957253	64957254	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	64957254	-	A	64957253	7	5	699	1	0	1	1	0	0	0	0	0	7957	359	13	0	2116	0	JMJD1C	10	64957253	Frame_Shift_Ins	INS	-	TCGA-KN-8424-01A-11D-2310-10	33818552	64957253	70577494	53	42725											
HPSE2	60495	ucsc.edu	37	10	100401630	100401630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	100401630	A	G	100401630	3	3	699	1	0	0	0	0	1	0	0	0	7352	304	11	3	768	3	HPSE2	10	100401630	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	35444377	100401630	35133117	54	42726											
CYP2E1	1571	hgsc.bcm.edu	37	10	135346309	135346309	+	Silent	SNP	T	T	C	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	135346309	T	C	135346309	2	2	699	1	0	0	0	0	0	0	0	1	4172	1432	50	3		3	CYP2E1	10	135346309	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	34944679	135346309	188438	55	42727											
PKP3	11187	mdanderson.org	37	11	397063	397063	+	Missense_Mutation	SNP	C	C	A	rs113852684	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	397063	C	A	397063	3	1	699	1	0	0	0	0	1	0	0	0	11993	739	26	4	572	4	PKP3	11	397063	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10		397063	134609453	56	42728											
DNHD1	144132	bcgsc.ca	37	11	6592054	6592054	+	Nonsense_Mutation	SNP	C	C	T	rs80197979		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	6592054	C	T	6592054	4	4	699	1	0	0	0	0	0	1	0	0	4670	760	27	1	13479	1	DNHD1	11	6592054	Nonsense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	6194991	6592054	128414462	57	42729											
USP28	57646	bcgsc.ca	37	11	113685956	113685956	+	Missense_Mutation	SNP	T	T	C	rs141617594		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	113685956	T	C	113685956	3	2	699	1	0	0	0	0	1	0	0	0	17070	1435	50	3	1669	3	USP28	11	113685956	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	107093902	113685956	21320560	58	42730											
SLC4A8	9498	broad.mit.edu	37	12	51868953	51868954	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	51868954	-	A	51868953	7	5	699	1	0	1	1	0	0	0	0	0	14672	1764	61	0	2197	0	SLC4A8	12	51868953	Frame_Shift_Ins	INS	-	TCGA-KN-8424-01A-11D-2310-10		51868953	81982942	59	42731											
ACVRL1	94	ucsc.edu	37	12	52306933	52306933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	52306933	A	G	52306933	3	3	699	1	0	0	0	0	1	0	0	0	225	304	11	3	118	3	ACVRL1	12	52306933	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	437980	52306933	81544962	60	42732											
MON2	23041	hgsc.bcm.edu;mdanderson.org	37	12	62954344	62954344	+	Silent	SNP	A	A	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	62954344	A	T	62954344	2	4	699	1	0	0	0	0	0	0	0	1	9707	436	16	5		5	MON2	12	62954344	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	10647411	62954344	70897551	61	42733											
KRR1	11103	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	75895756	75895756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	75895756	C	T	75895756	3	4	699	1	0	0	0	0	1	0	0	0	8453	835	29	2	301	2	KRR1	12	75895756	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	12941412	75895756	57956139	62	42734											
CCDC62	84660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	123282632	123282632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	123282632	A	T	123282632	3	4	699	1	0	0	0	0	1	0	0	0	2835	347	12	5	892	5	CCDC62	12	123282632	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	47386876	123282632	10569263	63	42735											
SCFD1	23256	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	31107412	31107412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	31107412	A	G	31107412	3	3	699	1	0	0	0	0	1	0	0	0	13902	14	1	3	412	3	SCFD1	14	31107412	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		31107412	76242128	64	42736											
JAG2	3714	mdanderson.org	37	14	105609335	105609335	+	Silent	SNP	A	A	G	rs10149229	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	105609335	A	G	105609335	2	3	699	1	0	0	0	0	0	0	0	1	7942	126	5	3		3	JAG2	14	105609335	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	74501923	105609335	1740205	65	42737											
CACNA1H	8912	broad.mit.edu	37	16	1265531	1265531	+	Silent	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	1265531	C	T	1265531	2	4	699	1	0	0	0	0	0	0	0	1	2547	796	28	2		2	CACNA1H	16	1265531	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10		1265531	89089222	66	42738											
CACNA1H	8912	mdanderson.org	37	16	1268485	1268485	+	Silent	SNP	C	C	T	rs2738891	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	1268485	C	T	1268485	2	4	699	1	0	0	0	0	0	0	0	1	2547	755	27	1		1	CACNA1H	16	1268485	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10	2954	1268485	89086268	67	42739											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	7574017	7574017	+	Missense_Mutation	SNP	C	C	T	rs121912664		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	7574017	C	T	7574017	3	4	699	1	0	0	0	0	1	0	0	0	16393	768	27	1	179	1	TP53	17	7574017	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10		7574017	73621193	68	42740											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	7578403	C	A	7578403	3	1	699	1	0	0	0	0	1	0	0	0	16393	710	25	4	771	4	TP53	17	7578403	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	4386	7578403	73616807	69	42741											
LLGL2	3993	broad.mit.edu;hgsc.bcm.edu	37	17	73566231	73566231	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	-	73566231	T	-	73566231	7	5	699	1	0	1	0	1	0	0	0	0	8841	1696	59	0	1858	0	LLGL2	17	73566231	Frame_Shift_Del	DEL	T	TCGA-KN-8424-01A-11D-2310-10	65987828	73566231	7628979	70	42742	586	2									
LLGL2	3993	bcgsc.ca	37	17	73566232	73566232	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	-	73566232	T	-	73566232	7	5	699	1	0	1	0	1	0	0	0	0	8841	1335	47	0	1859	0	LLGL2	17	73566232	Frame_Shift_Del	DEL	T	TCGA-KN-8424-01A-11D-2310-10	1	73566232	7628978	71	42743	586	2									
UNC13D	201294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	73826730	73826730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	73826730	C	T	73826730	3	4	699	1	0	0	0	0	1	0	0	0	16999	855	30	2	654	2	UNC13D	17	73826730	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	260498	73826730	7368480	72	42744											
ZBTB7C	201501	mdanderson.org	37	18	45555829	45555829	+	Silent	SNP	T	T	C	rs7231151	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	45555829	T	C	45555829	2	2	699	1	0	0	0	0	0	0	0	1	17567	1683	59	3		3	ZBTB7C	18	45555829	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10		45555829	32521419	73	42745											
NEDD4L	23327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	56063457	56063457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	56063457	C	T	56063457	3	4	699	1	0	0	0	0	1	0	0	0	10318	913	32	2	3034	2	NEDD4L	18	56063457	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	10507628	56063457	22013791	74	42746											
NFATC1	4772	mdanderson.org	37	18	77171061	77171061	+	Silent	SNP	T	T	G	rs2230112	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	77171061	T	G	77171061	2	3	699	1	0	0	0	0	0	0	0	1	10368	1596	56	5		5	NFATC1	18	77171061	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	21107604	77171061	906187	75	42747											
C19orf26	255057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	1236022	1236022	+	Silent	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	1236022	C	T	1236022	2	4	699	1	0	0	0	0	0	0	0	1	1918	523	19	1		1	C19orf26	19	1236022	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10		1236022	57892961	76	42748											
ARHGEF18	23370	broad.mit.edu	37	19	7504944	7504944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	7504944	G	A	7504944	3	1	699	1	0	0	0	0	1	0	0	0	901	971	34	2	120	2	ARHGEF18	19	7504944	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	6268922	7504944	51624039	77	42749											
MUC16	94025	mdanderson.org	37	19	9018476	9018476	+	Silent	SNP	G	G	A	rs112059772	bycluster;by1000genomes	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	9018476	G	A	9018476	2	1	699	1	0	0	0	0	0	0	0	1	9980	1335	47	2		2	MUC16	19	9018476	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	1513532	9018476	50110507	78	42750											
COL5A3	50509	mdanderson.org	37	19	10077419	10077419	+	Missense_Mutation	SNP	C	C	G	rs3745584	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	10077419	C	G	10077419	3	3	699	1	0	0	0	0	1	0	0	0	3700	710	25	4	795	4	COL5A3	19	10077419	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	1058943	10077419	49051564	79	42751											
KANK2	25959	mdanderson.org	37	19	11303943	11303943	+	Silent	SNP	A	A	G	rs3745681	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	11303943	A	G	11303943	2	3	699	1	0	0	0	0	0	0	0	1	7984	233	9	3		3	KANK2	19	11303943	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	1226524	11303943	47825040	80	42752											
GDF15	9518	mdanderson.org	37	19	18499238	18499238	+	Silent	SNP	G	G	T	rs1804826	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	18499238	G	T	18499238	2	4	699	1	0	0	0	0	0	0	0	1	6320	1074	38	4		4	GDF15	19	18499238	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	7195295	18499238	40629745	81	42753											
CIC	23152	ucsc.edu	37	19	42791707	42791707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	42791707	A	G	42791707	3	3	699	1	0	0	0	0	1	0	0	0	3426	275	10	3	611	3	CIC	19	42791707	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	24292469	42791707	16337276	82	42754											
SIGLEC1	6614	broad.mit.edu;bcgsc.ca	37	20	3669873	3669873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	3669873	T	C	3669873	3	2	699	1	0	0	0	0	1	0	0	0	14318	1623	56	3	138	3	SIGLEC1	20	3669873	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10		3669873	59355647	83	42755											
SGK2	10110	bcgsc.ca	37	20	42199308	42199308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	42199308	T	C	42199308	3	2	699	1	0	0	0	0	1	0	0	0	14222	1725	60	3	614	3	SGK2	20	42199308	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	38529435	42199308	20826212	84	42756											
TMPRSS15	5651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	19770214	19770214	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	19770214	G	T	19770214	4	4	699	1	0	0	0	0	0	1	0	0	16258	1294	45	4	2825	4	TMPRSS15	21	19770214	Nonsense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10		19770214	28359681	85	42757											
OSM	5008	broad.mit.edu	37	22	30661055	30661055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	30661055	A	G	30661055	3	3	699	1	0	0	0	0	1	0	0	0	11298	304	11	3	653	3	OSM	22	30661055	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		30661055	20643511	86	42758											
BRD1	23774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	50187922	50187922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	T	50187922	C	T	50187922	3	4	699	1	0	0	0	0	1	0	0	0	1503	768	27	1	1085	1	BRD1	22	50187922	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	19526867	50187922	1116644	87	42759											
SHROOM2	357	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	9905226	9905226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	9905226	A	G	9905226	3	3	699	1	0	0	0	0	1	0	0	0	14307	333	12	3	3666	3	SHROOM2	23	9905226	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		9905226	145365334	88	42760											
WWC3	55841	mdanderson.org	37	X	10085674	10085674	+	Silent	SNP	T	T	C	rs6530368	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	10085674	T	C	10085674	2	2	699	1	0	0	0	0	0	0	0	1	17425	1461	51	3		3	WWC3	23	10085674	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	180448	10085674	145184886	89	42761											
RPGR	6103	broad.mit.edu	37	X	38145385	38145385	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	-	38145385	T	-	38145385	7	5	699	1	0	1	0	1	0	0	0	0	13561	1551	54	0	1154	0	RPGR	23	38145385	Frame_Shift_Del	DEL	T	TCGA-KN-8424-01A-11D-2310-10	28059711	38145385	117125175	90	42762											
SLC16A2	6567	mdanderson.org	37	X	73641569	73641569	+	Missense_Mutation	SNP	T	T	C	rs6647476		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	73641569	T	C	73641569	3	2	699	1	0	0	0	0	1	0	0	0	14421	1667	58	3	321	3	SLC16A2	23	73641569	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	35496184	73641569	81628991	91	42763											
BRS3	680	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	135570529	135570529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	G	135570529	A	G	135570529	3	3	699	1	0	0	0	0	1	0	0	0	1524	217	8	3	258	3	BRS3	23	135570529	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	61928960	135570529	19700031	92	42764											
ABCD1	215	mdanderson.org	37	X	153008476	153008476	+	Missense_Mutation	SNP	T	T	C	rs201774661		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	C	153008476	T	C	153008476	3	2	699	1	0	0	0	0	1	0	0	0	60	1667	58	3	1846	3	ABCD1	23	153008476	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	17437947	153008476	2262084	93	42765	587	2									
ABCD1	215	mdanderson.org	37	X	153008483	153008483	+	Missense_Mutation	SNP	G	G	A	rs78993751		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910	A	153008483	G	A	153008483	3	1	699	1	0	0	0	0	1	0	0	0	60	1203	42	2	1853	2	ABCD1	23	153008483	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	7	153008483	2262077	94	42766	587	2									
RPL11	6135	hgsc.bcm.edu	37	1	24021261	24021261	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	-	24021261	T	-	24021261	7	5	700	1	0	1	0	1	0	0	0	0	13570	1522	53	0	390	0	RPL11	1	24021261	Frame_Shift_Del	DEL	T	TCGA-KN-8425-01A-11D-2310-10		24021261	225229360	1	42767	588	2									
RPL11	6135	bcgsc.ca	37	1	24021262	24021262	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	-	24021262	T	-	24021262	7	5	700	1	0	1	0	1	0	0	0	0	13570	391	14	0	391	0	RPL11	1	24021262	Frame_Shift_Del	DEL	T	TCGA-KN-8425-01A-11D-2310-10	1	24021262	225229359	2	42768	588	2									
HRNR	388697	broad.mit.edu	37	1	152186038	152186038	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	-	152186038	A	-	152186038	7	5	700	1	0	1	0	1	0	0	0	0	7366	262	10	0	489	0	HRNR	1	152186038	Frame_Shift_Del	DEL	A	TCGA-KN-8425-01A-11D-2310-10	128164776	152186038	97064583	3	42769	589	3									
HRNR	388697	broad.mit.edu	37	1	152186041	152186042	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	GG	152186042	-	GG	152186041	7	5	700	1	0	1	1	0	0	0	0	0	7366	593	21	0	492	0	HRNR	1	152186041	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	3	152186041	97064580	4	42770	589	3									
HRNR	388697	broad.mit.edu	37	1	152186047	152186047	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	-	152186047	A	-	152186047	7	5	700	1	0	1	0	1	0	0	0	0	7366	291	11	0	498	0	HRNR	1	152186047	Frame_Shift_Del	DEL	A	TCGA-KN-8425-01A-11D-2310-10	6	152186047	97064574	5	42771	589	3									
TGFB2	7042	bcgsc.ca	37	1	218520179	218520179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	218520179	A	G	218520179	3	3	700	1	0	0	0	0	1	0	0	0	15830	304	11	3	138	3	TGFB2	1	218520179	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	66334132	218520179	30730442	6	42772											
PLB1	151056	bcgsc.ca	37	2	28812354	28812354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	28812354	A	G	28812354	3	3	700	1	0	0	0	0	1	0	0	0	12031	275	10	3	1992	3	PLB1	2	28812354	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10		28812354	214387019	7	42773											
PSD4	23550	broad.mit.edu	37	2	113940985	113940985	+	Missense_Mutation	SNP	C	C	T	rs148062987	byfrequency;alternate_allele	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	113940985	C	T	113940985	3	4	700	1	0	0	0	0	1	0	0	0	12659	623	22	2	954	2	PSD4	2	113940985	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	85128631	113940985	129258388	8	42774											
SLC16A14	151473	bcgsc.ca	37	2	230911292	230911292	+	Missense_Mutation	SNP	C	C	A	rs62191755	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	230911292	C	A	230911292	3	1	700	1	0	0	0	0	1	0	0	0	14420	768	27	4	990	4	SLC16A14	2	230911292	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	116970307	230911292	12288081	9	42775											
DOCK3	1795	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	51251628	51251628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	51251628	G	A	51251628	3	1	700	1	0	0	0	0	1	0	0	0	4690	1000	35	2	1256	2	DOCK3	3	51251628	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		51251628	146770802	10	42776											
CNTN3	5067	broad.mit.edu	37	3	74570232	74570232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	74570232	A	G	74570232	3	3	700	1	0	0	0	0	1	0	0	0	3644	72	3	3	3142	3	CNTN3	3	74570232	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	23318604	74570232	123452198	11	42777											
ZBTB20	26137	broad.mit.edu	37	3	114070436	114070436	+	Silent	SNP	T	T	C	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	C	114070436	T	C	114070436	2	2	700	1	0	0	0	0	0	0	0	1	17541	1625	57	3		3	ZBTB20	3	114070436	Silent	SNP	T	TCGA-KN-8425-01A-11D-2310-10	39500204	114070436	83951994	12	42778											
ARHGAP24	83478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	86863259	86863259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	86863259	G	T	86863259	3	4	700	1	0	0	0	0	1	0	0	0	873	933	33	4	562	4	ARHGAP24	4	86863259	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		86863259	104291017	13	42779											
AFF1	4299	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	87967367	87967367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	87967367	C	T	87967367	3	4	700	1	0	0	0	0	1	0	0	0	356	536	19	1	115	1	AFF1	4	87967367	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	1104108	87967367	103186909	14	42780											
IRF2	3660	broad.mit.edu	37	4	185339717	185339717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	185339717	C	A	185339717	3	1	700	1	0	0	0	0	1	0	0	0	7835	710	25	4	740	4	IRF2	4	185339717	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	97372350	185339717	5814559	15	42781											
ADAMTS12	81792	broad.mit.edu	37	5	33881393	33881393	+	Missense_Mutation	SNP	G	G	A	rs201373627		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	33881393	G	A	33881393	3	1	700	1	0	0	0	0	1	0	0	0	257	1145	40	1	4556	1	ADAMTS12	5	33881393	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		33881393	147033867	16	42782											
ZNF391	346157	broad.mit.edu	37	6	27368216	27368216	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	27368216	C	T	27368216	4	4	700	1	0	0	0	0	0	1	0	0	17891	595	21	2	69	2	ZNF391	6	27368216	Nonsense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10		27368216	143746851	17	42783											
HLA-A	3105	mdanderson.org	37	6	29912333	29912333	+	Missense_Mutation	SNP	C	C	T	rs3179982	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	29912333	C	T	29912333	3	4	700	1	0	0	0	0	1	0	0	0	7202	681	24	2	970	2	HLA-A	6	29912333	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	2544117	29912333	141202734	18	42784											
HLA-B	3106	mdanderson.org	37	6	31323262	31323262	+	Missense_Mutation	SNP	G	G	A	rs77665001	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	31323262	G	A	31323262	3	1	700	1	0	0	0	0	1	0	0	0	7203	1086	38	1	377	1	HLA-B	6	31323262	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	1410929	31323262	139791805	19	42785											
GLP1R	2740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	39040661	39040661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	39040661	A	G	39040661	3	3	700	1	0	0	0	0	1	0	0	0	6459	391	14	3	555	3	GLP1R	6	39040661	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	7717399	39040661	132074406	20	42786											
PHF3	23469	ucsc.edu;bcgsc.ca	37	6	64419126	64419126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	64419126	C	T	64419126	3	4	700	1	0	0	0	0	1	0	0	0	11843	838	29	2	3841	2	PHF3	6	64419126	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	25378465	64419126	106695941	21	42787											
GJA10	84694	hgsc.bcm.edu;bcgsc.ca	37	6	90605153	90605153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	90605153	G	T	90605153	3	4	700	1	0	0	0	0	1	0	0	0	6408	1270	44	4	968	4	GJA10	6	90605153	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	26186027	90605153	80509914	22	42788											
CDC40	51362	broad.mit.edu	37	6	110528751	110528751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	110528751	C	A	110528751	3	1	700	1	0	0	0	0	1	0	0	0	3072	797	28	4	463	4	CDC40	6	110528751	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	19923598	110528751	60586316	23	42789											
FAM184A	79632	broad.mit.edu	37	6	119281278	119281278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	119281278	A	G	119281278	3	3	700	1	0	0	0	0	1	0	0	0	5515	246	9	3	13	3	FAM184A	6	119281278	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	8752527	119281278	51833789	24	42790											
TCP10L2	401285	mdanderson.org	37	6	167592606	167592606	+	Silent	SNP	T	T	A	rs201866116	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	167592606	T	A	167592606	2	1	700	1	0	0	0	0	0	0	0	1	15724	1799	63	5		5	TCP10L2	6	167592606	Silent	SNP	T	TCGA-KN-8425-01A-11D-2310-10	48311328	167592606	3522461	25	42791											
URGCP	55665	broad.mit.edu	37	7	43917145	43917146	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	C	43917146	-	C	43917145	7	5	700	1	0	1	1	0	0	0	0	0	17038	1190	42	0	882	0	URGCP	7	43917145	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10		43917145	115221518	26	42792											
TRRAP	8295	broad.mit.edu	37	7	98522828	98522828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	98522828	G	T	98522828	3	4	700	1	0	0	0	0	1	0	0	0	16613	1203	42	4	2999	4	TRRAP	7	98522828	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	54605683	98522828	60615835	27	42793											
CLCN1	1180	broad.mit.edu	37	7	143047474	143047475	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	143047475	-	G	143047474	7	5	700	1	0	1	1	0	0	0	0	0	3464	1580	55	0	2495	0	CLCN1	7	143047474	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	44524646	143047474	16091189	28	42794											
PCMTD1	115294	mdanderson.org	37	8	52732959	52732959	+	Silent	SNP	G	G	A	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	52732959	G	A	52732959	2	1	700	1	0	0	0	0	0	0	0	1	11593	1219	43	2		2	PCMTD1	8	52732959	Silent	SNP	G	TCGA-KN-8425-01A-11D-2310-10		52732959	93631063	29	42795	590	2	1	119		3	2	23	N	G_C	4.690306e-05
PCMTD1	115294	mdanderson.org	37	8	52732961	52732961	+	Missense_Mutation	SNP	G	G	T	rs399592	bycluster;byfrequency;bysubmitter;alternate_allele	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	52732961	G	T	52732961	3	4	700	1	0	0	0	0	1	0	0	0	11593	1203	42	4	53	4	PCMTD1	8	52732961	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	2	52732961	93631061	30	42796	590	2	1	119		3	2	23	N	G_C	4.690306e-05
PCMTD1	115294	mdanderson.org	37	8	52732981	52732981	+	Missense_Mutation	SNP	C	C	G	rs201786115		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	52732981	C	G	52732981	3	3	700	1	0	0	0	0	1	0	0	0	11593	913	32	4	73	4	PCMTD1	8	52732981	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	20	52732981	93631041	31	42797			1	119		3	2	23	N	G_C	4.690306e-05
ARFGEF1	10565	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	68152453	68152453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	68152453	G	A	68152453	3	1	700	1	0	0	0	0	1	0	0	0	852	942	33	2	2706	2	ARFGEF1	8	68152453	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	15419472	68152453	78211569	32	42798											
PABPC1	26986	mdanderson.org	37	8	101721899	101721899	+	Nonsense_Mutation	SNP	C	C	A	rs142985461	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	101721899	C	A	101721899	4	1	700	1	0	0	0	0	0	1	0	0	11370	922	32	4	905	4	PABPC1	8	101721899	Nonsense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	33569446	101721899	44642123	33	42799											
BAI1	575	broad.mit.edu	37	8	143562971	143562971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	143562971	A	G	143562971	3	3	700	1	0	0	0	0	1	0	0	0	1298	275	10	3	2067	3	BAI1	8	143562971	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	41841072	143562971	2801051	34	42800											
GTF3C5	9328	broad.mit.edu	37	9	135929828	135929828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	135929828	A	G	135929828	3	3	700	1	0	0	0	0	1	0	0	0	6883	72	3	3	1048	3	GTF3C5	9	135929828	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10		135929828	5283603	35	42801											
NOTCH1	4851	broad.mit.edu	37	9	139417353	139417354	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	GA	139417354	-	GA	139417353	7	5	700	1	0	1	1	0	0	0	0	0	10554	623	22	0	7100	0	NOTCH1	9	139417353	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	3487525	139417353	1796078	36	42802	591	2									
NOTCH1	4851	broad.mit.edu	37	9	139417355	139417356	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	139417356	-	T	139417355	7	5	700	1	0	1	1	0	0	0	0	0	10554	623	22	0	7102	0	NOTCH1	9	139417355	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	2	139417355	1796076	37	42803	591	2									
OR10A5	144124	mdanderson.org	37	11	6867588	6867588	+	Silent	SNP	T	T	C	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	C	6867588	T	C	6867588	2	2	700	1	0	0	0	0	0	0	0	1	10900	1509	53	3		3	OR10A5	11	6867588	Silent	SNP	T	TCGA-KN-8425-01A-11D-2310-10		6867588	128138928	38	42804											
ABCC8	6833	broad.mit.edu	37	11	17483365	17483365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	17483365	A	G	17483365	3	3	700	1	0	0	0	0	1	0	0	0	58	333	12	3	4298	3	ABCC8	11	17483365	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	10615777	17483365	117523151	39	42805											
C2CD3	26005	broad.mit.edu	37	11	73820090	73820090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	73820090	G	T	73820090	3	4	700	1	0	0	0	0	1	0	0	0	2156	1174	41	4	4020	4	C2CD3	11	73820090	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	56336725	73820090	61186426	40	42806											
KIAA1377	57562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	101793446	101793446	+	Missense_Mutation	SNP	G	G	A	rs142032267		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	101793446	G	A	101793446	3	1	700	1	0	0	0	0	1	0	0	0	8234	1058	37	1	209	1	KIAA1377	11	101793446	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	27973356	101793446	33213070	41	42807											
ITGA5	3678	broad.mit.edu	37	12	54812840	54812840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	54812840	G	T	54812840	3	4	700	1	0	0	0	0	1	0	0	0	7886	1203	42	4	3126	4	ITGA5	12	54812840	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		54812840	79039055	42	42808											
FBXO21	23014	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	117624289	117624289	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	117624289	C	A	117624289	4	1	700	1	0	0	0	0	0	1	0	0	5740	864	30	4	1463	4	FBXO21	12	117624289	Nonsense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	62811449	117624289	16227606	43	42809											
TMEM30B	161291	mdanderson.org	37	14	61747644	61747644	+	Silent	SNP	A	A	G	rs3196765		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	61747644	A	G	61747644	2	3	700	1	0	0	0	0	0	0	0	1	16166	378	14	3		3	TMEM30B	14	61747644	Silent	SNP	A	TCGA-KN-8425-01A-11D-2310-10		61747644	45601896	44	42810											
PLEKHG3	26030	broad.mit.edu	37	14	65209023	65209024	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	C	65209024	-	C	65209023	7	5	700	1	0	1	1	0	0	0	0	0	12077	1203	42	0	2670	0	PLEKHG3	14	65209023	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	3461379	65209023	42140517	45	42811											
BAG5	9529	bcgsc.ca	37	14	104026390	104026390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	C	104026390	T	C	104026390	3	2	700	1	0	0	0	0	1	0	0	0	1290	1725	60	3	235	3	BAG5	14	104026390	Missense_Mutation	SNP	T	TCGA-KN-8425-01A-11D-2310-10	38817367	104026390	3323150	46	42812											
DNAJC17	55192	hgsc.bcm.edu	37	15	41060179	41060179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	41060179	C	T	41060179	3	4	700	1	0	0	0	0	1	0	0	0	4638	768	27	1	44	1	DNAJC17	15	41060179	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10		41060179	61471213	47	42813											
CEP152	22995	broad.mit.edu;mdanderson.org;bcgsc.ca	37	15	49081131	49081131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	C	49081131	T	C	49081131	3	2	700	1	0	0	0	0	1	0	0	0	3250	1464	51	3	3996	3	CEP152	15	49081131	Missense_Mutation	SNP	T	TCGA-KN-8425-01A-11D-2310-10	8020952	49081131	53450261	48	42814											
ACAN	176	broad.mit.edu;mdanderson.org;bcgsc.ca	37	15	89383275	89383275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	89383275	C	T	89383275	3	4	700	1	0	0	0	0	1	0	0	0	117	536	19	1	497	1	ACAN	15	89383275	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	40302144	89383275	13148117	49	42815											
CRAMP1L	57585	broad.mit.edu	37	16	1705979	1705979	+	Silent	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	1705979	A	G	1705979	2	3	700	1	0	0	0	0	0	0	0	1	3848	146	6	3		3	CRAMP1L	16	1705979	Silent	SNP	A	TCGA-KN-8425-01A-11D-2310-10		1705979	88648774	50	42816											
MAPK3	5595	hgsc.bcm.edu	37	16	30128095	30128095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	30128095	G	T	30128095	3	4	700	1	0	0	0	0	1	0	0	0	9286	1232	43	4	109	4	MAPK3	16	30128095	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	28422116	30128095	60226658	51	42817											
RAP1GAP2	23108	bcgsc.ca	37	17	2901629	2901629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	2901629	G	A	2901629	3	1	700	1	0	0	0	0	1	0	0	0	13051	1145	40	1	1213	1	RAP1GAP2	17	2901629	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		2901629	78293581	52	42818											
CHD3	1107	broad.mit.edu;hgsc.bcm.edu	37	17	7793910	7793910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	C	7793910	T	C	7793910	3	2	700	1	0	0	0	0	1	0	0	0	3328	1783	62	3	526	3	CHD3	17	7793910	Missense_Mutation	SNP	T	TCGA-KN-8425-01A-11D-2310-10	4892281	7793910	73401300	53	42819											
ABCC3	8714	bcgsc.ca	37	17	48744970	48744970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	48744970	A	G	48744970	3	3	700	1	0	0	0	0	1	0	0	0	54	43	2	3	1533	3	ABCC3	17	48744970	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	40951060	48744970	32450240	54	42820											
RPTOR	57521	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	78866565	78866565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	78866565	G	T	78866565	3	4	700	1	0	0	0	0	1	0	0	0	13678	1319	46	4	2212	4	RPTOR	17	78866565	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	30121595	78866565	2328645	55	42821											
SLC39A3	29985	bcgsc.ca	37	19	2732787	2732787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	2732787	A	G	2732787	3	3	700	1	0	0	0	0	1	0	0	0	14632	420	15	3	41	3	SLC39A3	19	2732787	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10		2732787	56396196	56	42822											
EBI3	10148	mdanderson.org	37	19	4237067	4237067	+	Silent	SNP	A	A	G	rs4905	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	4237067	A	G	4237067	2	3	700	1	0	0	0	0	0	0	0	1	4885	117	5	3		3	EBI3	19	4237067	Silent	SNP	A	TCGA-KN-8425-01A-11D-2310-10	1504280	4237067	54891916	57	42823											
MUC16	94025	mdanderson.org	37	19	8999445	8999445	+	Missense_Mutation	SNP	C	C	T	rs112439001		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	8999445	C	T	8999445	3	4	700	1	0	0	0	0	1	0	0	0	9980	797	28	2	2909	2	MUC16	19	8999445	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	4762378	8999445	50129538	58	42824											
MUC16	94025	mdanderson.org	37	19	9012858	9012858	+	Silent	SNP	G	G	A	rs111669353		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	9012858	G	A	9012858	2	1	700	1	0	0	0	0	0	0	0	1	9980	1335	47	2		2	MUC16	19	9012858	Silent	SNP	G	TCGA-KN-8425-01A-11D-2310-10	13413	9012858	50116125	59	42825											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	9058813	9058813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	9058813	C	G	9058813	3	3	700	1	0	0	0	0	1	0	0	0	9980	565	20	4	15218	4	MUC16	19	9058813	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	45955	9058813	50070170	60	42826											
CEACAM1	634	mdanderson.org	37	19	43031318	43031318	+	Missense_Mutation	SNP	G	G	A	rs199627333		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	43031318	G	A	43031318	3	1	700	1	0	0	0	0	1	0	0	0	3189	1377	48	2	1410	2	CEACAM1	19	43031318	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	33972505	43031318	16097665	61	42827			2	120		2	2	12	G		2.345181e-05
CEACAM1	634	mdanderson.org	37	19	43031329	43031329	+	Silent	SNP	G	G	A	rs143477834	bycluster;byfrequency;by1000genomes	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	43031329	G	A	43031329	2	1	700	1	0	0	0	0	0	0	0	1	3189	1078	38	1		1	CEACAM1	19	43031329	Silent	SNP	G	TCGA-KN-8425-01A-11D-2310-10	11	43031329	16097654	62	42828			2	120		2	2	12	G		2.345181e-05
MYH14	79784	broad.mit.edu	37	19	50805044	50805045	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	C	50805045	-	C	50805044	7	5	700	1	0	1	1	0	0	0	0	0	10040	1203	42	0	5750	0	MYH14	19	50805044	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	7773715	50805044	8323939	63	42829											
NLRP9	338321	broad.mit.edu	37	19	56243852	56243852	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	56243852	G	A	56243852	4	1	700	1	0	0	0	0	0	1	0	0	10491	1357	47	2	1662	2	NLRP9	19	56243852	Nonsense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	5438808	56243852	2885131	64	42830											
SIRPA	140885	mdanderson.org	37	20	1895950	1895951	+	Missense_Mutation	DNP	CC	CC	GT	rs149634649	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	GT	1895951	CC	GT	1895950	3	3	700	1	0	0	0	0	1	0	0	0	14345	506	18	4	291	4	SIRPA	20	1895950	Missense_Mutation	DNP	CC	TCGA-KN-8425-01A-11D-2310-10		1895950	61129570	65	42831											
EEF1A2	1917	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	62121830	62121830	+	Splice_Site	SNP	A	A	C	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	C	62121830	A	C	62121830	5	2	700	1	0	0	0	0	0	0	1	0	4926	173	6	5	372	5	EEF1A2	20	62121830	Splice_Site	SNP	A	TCGA-KN-8425-01A-11D-2310-10	60225880	62121830	903690	66	42832											
CDC45	8318	broad.mit.edu	37	22	19496202	19496202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	G	19496202	A	G	19496202	3	3	700	1	0	0	0	0	1	0	0	0	3083	275	10	3	1355	3	CDC45	22	19496202	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10		19496202	31808364	67	42833											
CABIN1	23523	broad.mit.edu	37	22	24573681	24573681	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	-	24573681	T	-	24573681	7	5	700	1	0	1	0	1	0	0	0	0	2530	1551	54	0	6553	0	CABIN1	22	24573681	Frame_Shift_Del	DEL	T	TCGA-KN-8425-01A-11D-2310-10	5077479	24573681	26730885	68	42834											
NUDT10	170685	mdanderson.org	37	X	51075901	51075901	+	Silent	SNP	G	G	A	rs2801627		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	51075901	G	A	51075901	2	1	700	1	0	0	0	0	0	0	0	1	10733	962	34	2		2	NUDT10	23	51075901	Silent	SNP	G	TCGA-KN-8425-01A-11D-2310-10		51075901	104194659	69	42835											
SLC25A5	292	mdanderson.org	37	X	118603729	118603729	+	Missense_Mutation	SNP	G	G	A	rs143413528	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	A	118603729	G	A	118603729	3	1	700	1	0	0	0	0	1	0	0	0	14525	1116	39	1	223	1	SLC25A5	23	118603729	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	67527828	118603729	36666831	70	42836											
PCDH11Y	83259	broad.mit.edu	37	Y	4967267	4967267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4	T	4967267	C	T	4967267	3	4	700	1	0	0	0	0	1	0	0	0	11516	884	31	1	1690	1	PCDH11Y	24	4967267	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10		4967267	54406299	71	42837											
LOC440563	0	broad.mit.edu	37	1	13183837	13183837	+	Silent	SNP	G	G	A	rs12566484	byhapmap	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	13183837	G	A	13183837	2	1	701	1	0	0	0	0	0	0	0	1	8886	1020	36	2		2	LOC440563	1	13183837	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10		13183837	236066784	1	42838											
UBXN11	91544	mdanderson.org	37	1	26608849	26608849	+	Missense_Mutation	SNP	T	T	A	rs199707978		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	26608849	T	A	26608849	3	1	701	1	0	0	0	0	1	0	0	0	16925	1580	55	5	62	5	UBXN11	1	26608849	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	13425012	26608849	222641772	2	42839											
MED8	112950	broad.mit.edu	37	1	43850194	43850194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	43850194	A	G	43850194	3	3	701	1	0	0	0	0	1	0	0	0	9460	333	12	3	76	3	MED8	1	43850194	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	17241345	43850194	205400427	3	42840											
SLC35D1	23169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	67486077	67486077	+	Missense_Mutation	SNP	G	G	A	rs143745141	alternate_allele	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	67486077	G	A	67486077	3	1	701	1	0	0	0	0	1	0	0	0	14594	1377	48	2	228	2	SLC35D1	1	67486077	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	23635883	67486077	181764544	4	42841											
CSDE1	7812	bcgsc.ca	37	1	115280678	115280683	+	In_Frame_Del	DEL	TTCAAA	TTCAAA	-	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	TTCAAA	TTCAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	-	115280683	TTCAAA	-	115280678	7	5	701	1	0	1	0	1	0	0	0	0	3931	1783	62	0	2249	0	CSDE1	1	115280678	In_Frame_Del	DEL	TTCAAA	TCGA-KN-8426-01A-11D-2310-10	47794601	115280678	133969943	5	42842											
SHC1	6464	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	154938971	154938971	+	Missense_Mutation	SNP	C	C	A	rs150380146	alternate_allele	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	154938971	C	A	154938971	3	1	701	1	0	0	0	0	1	0	0	0	14283	797	28	4	768	4	SHC1	1	154938971	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	39658293	154938971	94311650	6	42843											
FMO3	2328	broad.mit.edu	37	1	171073025	171073025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	171073025	T	C	171073025	3	2	701	1	0	0	0	0	1	0	0	0	5963	1609	56	3	238	3	FMO3	1	171073025	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	16134054	171073025	78177596	7	42844											
TMEM214	54867	ucsc.edu;bcgsc.ca	37	2	27263695	27263695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	27263695	C	T	27263695	3	4	701	1	0	0	0	0	1	0	0	0	16149	855	30	2	2126	2	TMEM214	2	27263695	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		27263695	215935678	8	42845											
IRS1	3667	ucsc.edu	37	2	227659840	227659840	+	Silent	SNP	T	T	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	227659840	T	G	227659840	2	3	701	1	0	0	0	0	0	0	0	1	7847	1683	59	5		5	IRS1	2	227659840	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	200396145	227659840	15539533	9	42846											
IQCA1	79781	bcgsc.ca	37	2	237402454	237402454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	237402454	A	G	237402454	3	3	701	1	0	0	0	0	1	0	0	0	7809	72	3	3	2123	3	IQCA1	2	237402454	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	9742614	237402454	5796919	10	42847											
IGSF10	285313	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	151162874	151162874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	151162874	G	T	151162874	3	4	701	1	0	0	0	0	1	0	0	0	7604	1174	41	4	3036	4	IGSF10	3	151162874	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10		151162874	46859556	11	42848											
IGSF10	285313	broad.mit.edu	37	3	151165623	151165623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	151165623	T	C	151165623	3	2	701	1	0	0	0	0	1	0	0	0	7604	1609	56	3	5785	3	IGSF10	3	151165623	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	2749	151165623	46856807	12	42849											
GFM1	85476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	158363431	158363431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	158363431	C	T	158363431	3	4	701	1	0	0	0	0	1	0	0	0	6348	739	26	2	101	2	GFM1	3	158363431	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	7197808	158363431	39658999	13	42850											
HTR3E	285242	ucsc.edu	37	3	183818222	183818222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	183818222	G	A	183818222	3	1	701	1	0	0	0	0	1	0	0	0	7455	1000	35	2	64	2	HTR3E	3	183818222	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	25454791	183818222	14204208	14	42851											
MUC4	4585	broad.mit.edu	37	3	195509957	195509957	+	Missense_Mutation	SNP	A	A	G	rs201699932	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	195509957	A	G	195509957	3	3	701	1	0	0	0	0	1	0	0	0	9985	304	11	3		3	MUC4	3	195509957	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	11691735	195509957	2512473	15	42852			1	121		3	3	190	N	T_G_A	1.568531e-07
MUC4	4585	bcgsc.ca	37	3	195510133	195510133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	195510133	T	C	195510133	3	2	701	1	0	0	0	0	1	0	0	0	9985	1725	60	3		3	MUC4	3	195510133	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	176	195510133	2512297	16	42853			1	121		3	3	190	N	T_G_A	1.568531e-07
MUC4	4585	bcgsc.ca	37	3	195510146	195510146	+	Missense_Mutation	SNP	G	G	C	rs199750921		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	195510146	G	C	195510146	3	2	701	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195510146	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	13	195510146	2512284	17	42854			1	121		3	3	190	N	T_G_A	1.568531e-07
PAK2	5062	mdanderson.org	37	3	196509522	196509522	+	Missense_Mutation	SNP	C	C	G	rs67093638		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	196509522	C	G	196509522	3	3	701	1	0	0	0	0	1	0	0	0	11408	913	32	4	7	4	PAK2	3	196509522	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	999376	196509522	1512908	18	42855											
ANK2	287	broad.mit.edu	37	4	114278579	114278579	+	Silent	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	114278579	T	C	114278579	2	2	701	1	0	0	0	0	0	0	0	1	621	1596	56	3		3	ANK2	4	114278579	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10		114278579	76875697	19	42856											
SPOCK3	50859	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	167656152	167656152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	167656152	C	T	167656152	3	4	701	1	0	0	0	0	1	0	0	0	15093	826	29	2	83	2	SPOCK3	4	167656152	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	53377573	167656152	23498124	20	42857											
CBR4	84869	bcgsc.ca	37	4	169931136	169931136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	169931136	G	T	169931136	3	4	701	1	0	0	0	0	1	0	0	0	2712	1252	44	4	628	4	CBR4	4	169931136	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	2274984	169931136	21223140	21	42858											
TRIO	7204	ucsc.edu	37	5	14369520	14369520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	14369520	A	G	14369520	3	3	701	1	0	0	0	0	1	0	0	0	16564	72	3	3	3174	3	TRIO	5	14369520	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10		14369520	166545740	22	42859											
ADAMTS6	11174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	64468715	64468715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	64468715	G	A	64468715	3	1	701	1	0	0	0	0	1	0	0	0	270	1116	39	1	334	1	ADAMTS6	5	64468715	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	50099195	64468715	116446545	23	42860											
AGGF1	55109	hgsc.bcm.edu;ucsc.edu	37	5	76326664	76326664	+	Silent	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	76326664	C	T	76326664	2	4	701	1	0	0	0	0	0	0	0	1	382	796	28	2		2	AGGF1	5	76326664	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	11857949	76326664	104588596	24	42861											
DTWD2	285605	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	118324112	118324112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	118324112	C	A	118324112	3	1	701	1	0	0	0	0	1	0	0	0	4794	652	23	4	825	4	DTWD2	5	118324112	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	41997448	118324112	62591148	25	42862											
MYOT	9499	broad.mit.edu	37	5	137221866	137221866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	137221866	A	G	137221866	3	3	701	1	0	0	0	0	1	0	0	0	10101	101	4	3	1180	3	MYOT	5	137221866	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	18897754	137221866	43693394	26	42863											
PSD2	84249	broad.mit.edu	37	5	139189307	139189307	+	Silent	SNP	G	G	A	rs146390261	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	139189307	G	A	139189307	2	1	701	1	0	0	0	0	0	0	0	1	12657	1103	39	1		1	PSD2	5	139189307	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	1967441	139189307	41725953	27	42864											
PCDHA11	56138	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	140250883	140250883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	140250883	C	T	140250883	3	4	701	1	0	0	0	0	1	0	0	0	11528	768	27	1	2197	1	PCDHA11	5	140250883	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	1061576	140250883	40664377	28	42865											
TCOF1	6949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	149773014	149773014	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	149773014	C	G	149773014	3	3	701	1	0	0	0	0	1	0	0	0	15720	855	30	4	3795	4	TCOF1	5	149773014	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	9522131	149773014	31142246	29	42866											
RIPPLY2	134701	broad.mit.edu	37	6	84567032	84567032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	84567032	C	A	84567032	3	1	701	1	0	0	0	0	1	0	0	0	13398	594	21	4	325	4	RIPPLY2	6	84567032	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		84567032	86548035	30	42867											
PNRC1	10957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	89793802	89793802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	89793802	A	G	89793802	3	3	701	1	0	0	0	0	1	0	0	0	12181	420	15	3	877	3	PNRC1	6	89793802	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	5226770	89793802	81321265	31	42868											
SLC29A4	222962	mdanderson.org	37	7	5338714	5338714	+	Silent	SNP	T	T	C	rs6950111	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	5338714	T	C	5338714	2	2	701	1	0	0	0	0	0	0	0	1	14550	1461	51	3		3	SLC29A4	7	5338714	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10		5338714	153799949	32	42869											
OSBPL3	26031	broad.mit.edu	37	7	24931999	24931999	+	Silent	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	24931999	T	C	24931999	2	2	701	1	0	0	0	0	0	0	0	1	11286	1654	58	3		3	OSBPL3	7	24931999	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	19593285	24931999	134206664	33	42870											
MUC17	140453	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	100677675	100677675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	100677675	C	T	100677675	3	4	701	1	0	0	0	0	1	0	0	0	9981	536	19	1	2988	1	MUC17	7	100677675	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	75745676	100677675	58460988	34	42871											
HBP1	26959	broad.mit.edu	37	7	106827076	106827076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	106827076	A	G	106827076	3	3	701	1	0	0	0	0	1	0	0	0	6992	412	15	3	733	3	HBP1	7	106827076	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	6149401	106827076	52311587	35	42872											
RP1L1	94137	mdanderson.org	37	8	10465962	10465962	+	Missense_Mutation	SNP	C	C	A	rs111646478		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	10465962	C	A	10465962	3	1	701	1	0	0	0	0	1	0	0	0	13546	680	24	4	1560	4	RP1L1	8	10465962	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		10465962	135898060	36	42873			2	122		2	2	29	N	T_C	8.320947e-05
RP1L1	94137	mdanderson.org	37	8	10465990	10465990	+	Missense_Mutation	SNP	T	T	C	rs200622636	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	10465990	T	C	10465990	3	2	701	1	0	0	0	0	1	0	0	0	13546	1435	50	3	1588	3	RP1L1	8	10465990	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	28	10465990	135898032	37	42874			2	122		2	2	29	N	T_C	8.320947e-05
PREX2	80243	broad.mit.edu	37	8	68939495	68939495	+	Silent	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	68939495	T	C	68939495	2	2	701	1	0	0	0	0	0	0	0	1	12487	1770	62	3		3	PREX2	8	68939495	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	58473505	68939495	77424527	38	42875											
CYP11B1	1584	mdanderson.org	37	8	143957661	143957661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	143957661	T	C	143957661	3	2	701	1	0	0	0	0	1	0	0	0	4147	1667	58	3	581	3	CYP11B1	8	143957661	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	75018166	143957661	2406361	39	42876											
FBXO18	84893	bcgsc.ca	37	10	5978506	5978506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	5978506	C	T	5978506	3	4	701	1	0	0	0	0	1	0	0	0	5738	623	22	2	3157	2	FBXO18	10	5978506	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		5978506	129556241	40	42877											
SVIL	6840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	29759270	29759270	+	Silent	SNP	G	G	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	29759270	G	A	29759270	2	1	701	1	0	0	0	0	0	0	0	1	15433	1136	40	1		1	SVIL	10	29759270	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	23780764	29759270	105775477	41	42878											
ITGB1	3688	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	33218830	33218830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	33218830	C	T	33218830	3	4	701	1	0	0	0	0	1	0	0	0	7897	797	28	2	2390	2	ITGB1	10	33218830	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	3459560	33218830	102315917	42	42879											
MUC2	4583	mdanderson.org	37	11	1093569	1093569	+	Silent	SNP	A	A	C	rs72842460	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	1093569	A	C	1093569	2	2	701	1	0	0	0	0	0	0	0	1	9982	117	5	5		5	MUC2	11	1093569	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10		1093569	133912947	43	42880											
TH	7054	bcgsc.ca	37	11	2190951	2190951	+	Missense_Mutation	SNP	C	C	T	rs6356	bycluster;byfrequency;by1000genomes	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	2190951	C	T	2190951	3	4	701	1	0	0	0	0	1	0	0	0	15850	536	19	1	1300	1	TH	11	2190951	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	1097382	2190951	132815565	44	42881											
OR51M1	390059	ucsc.edu;mdanderson.org;bcgsc.ca	37	11	5411028	5411028	+	Missense_Mutation	SNP	C	C	T	rs74683499	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	5411028	C	T	5411028	3	4	701	1	0	0	0	0	1	0	0	0	11110	652	23	1	402	1	OR51M1	11	5411028	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	3220077	5411028	129595488	45	42882											
CCDC73	493860	ucsc.edu;mdanderson.org;bcgsc.ca	37	11	32636263	32636263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	32636263	G	T	32636263	3	4	701	1	0	0	0	0	1	0	0	0	2848	1348	47	4	1650	4	CCDC73	11	32636263	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	27225235	32636263	102370253	46	42883											
CDC42BPG	55561	mdanderson.org	37	11	64597205	64597205	+	Silent	SNP	G	G	T	rs7936466	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	64597205	G	T	64597205	2	4	701	1	0	0	0	0	0	0	0	1	3076	1074	38	4		4	CDC42BPG	11	64597205	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	31960942	64597205	70409311	47	42884											
ARAP1	116985	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	72438103	72438103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	72438103	G	A	72438103	3	1	701	1	0	0	0	0	1	0	0	0	838	1145	40	1	4413	1	ARAP1	11	72438103	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	7840898	72438103	62568413	48	42885											
TMPRSS13	84000	broad.mit.edu;bcgsc.ca	37	11	117784539	117784539	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	117784539	C	G	117784539	3	3	701	1	0	0	0	0	1	0	0	0	16257	856	30	4	977	4	TMPRSS13	11	117784539	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	45346436	117784539	17221977	49	42886											
CLEC6A	93978	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	8618083	8618083	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	8618083	G	A	8618083	4	1	701	1	0	0	0	0	0	1	0	0	3522	1357	47	2	241	2	CLEC6A	12	8618083	Nonsense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10		8618083	125233812	50	42887											
PRB2	653247	mdanderson.org	37	12	11546448	11546448	+	Silent	SNP	G	G	A	rs11054278		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	11546448	G	A	11546448	2	1	701	1	0	0	0	0	0	0	0	1	12453	1306	46	2		2	PRB2	12	11546448	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	2928365	11546448	122305447	51	42888											
KIF5A	3798	broad.mit.edu	37	12	57957254	57957254	+	Silent	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	57957254	C	T	57957254	2	4	701	1	0	0	0	0	0	0	0	1	8312	610	22	2		2	KIF5A	12	57957254	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	46410806	57957254	75894641	52	42889											
CCDC59	29080	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	82747061	82747061	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	82747061	C	A	82747061	4	1	701	1	0	0	0	0	0	1	0	0	2831	922	32	4	134	4	CCDC59	12	82747061	Nonsense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	24789807	82747061	51104834	53	42890											
RNF17	56163	ucsc.edu	37	13	25439115	25439115	+	Silent	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	25439115	T	C	25439115	2	2	701	1	0	0	0	0	0	0	0	1	13474	1403	49	3		3	RNF17	13	25439115	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10		25439115	89730763	54	42891											
DGKH	160851	ucsc.edu	37	13	42623046	42623046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	42623046	A	G	42623046	3	3	701	1	0	0	0	0	1	0	0	0	4472	304	11	3	139	3	DGKH	13	42623046	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	17183931	42623046	72546832	55	42892											
PIBF1	10464	broad.mit.edu	37	13	73572977	73572977	+	Silent	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	73572977	A	G	73572977	2	3	701	1	0	0	0	0	0	0	0	1	11886	40	2	3		3	PIBF1	13	73572977	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	30949931	73572977	41596901	56	42893											
LRFN5	145581	broad.mit.edu	37	14	42355997	42355997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	42355997	C	T	42355997	3	4	701	1	0	0	0	0	1	0	0	0	8948	759	27	1	171	1	LRFN5	14	42355997	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		42355997	64993543	57	42894											
SYT16	83851	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	14	62462902	62462902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	62462902	G	T	62462902	3	4	701	1	0	0	0	0	1	0	0	0	15484	991	35	4	167	4	SYT16	14	62462902	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	20106905	62462902	44886638	58	42895											
PLEKHG3	26030	broad.mit.edu	37	14	65194463	65194464	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	65194464	-	C	65194463	7	5	701	1	0	1	1	0	0	0	0	0	12077	962	34	0	116	0	PLEKHG3	14	65194463	Frame_Shift_Ins	INS	-	TCGA-KN-8426-01A-11D-2310-10	2731561	65194463	42155077	59	42896											
TRIP11	9321	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	92471894	92471894	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	92471894	A	C	92471894	3	2	701	1	0	0	0	0	1	0	0	0	16567	72	3	5	3557	5	TRIP11	14	92471894	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	27277431	92471894	14877646	60	42897											
NIPA2	81614	broad.mit.edu	37	15	23006232	23006232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	23006232	T	C	23006232	3	2	701	1	0	0	0	0	1	0	0	0	10430	1667	58	3	14	3	NIPA2	15	23006232	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10		23006232	79525160	61	42898											
FMN1	342184	broad.mit.edu	37	15	33261112	33261113	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	33261113	-	G	33261112	7	5	701	1	0	1	1	0	0	0	0	0	5956	233	9	0	1525	0	FMN1	15	33261112	Frame_Shift_Ins	INS	-	TCGA-KN-8426-01A-11D-2310-10	10254880	33261112	69270280	62	42899											
ZFP106	64397	broad.mit.edu	37	15	42734362	42734362	+	Silent	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	42734362	T	C	42734362	2	2	701	1	0	0	0	0	0	0	0	1	17649	1606	56	3		3	ZFP106	15	42734362	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	9473250	42734362	59797030	63	42900											
TPSAB1	7177	mdanderson.org	37	16	1291269	1291269	+	Silent	SNP	C	C	T	rs71384642		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	1291269	C	T	1291269	2	4	701	1	0	0	0	0	0	0	0	1	16435	776	27	1		1	TPSAB1	16	1291269	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10		1291269	89063484	64	42901											
TPSD1	23430	mdanderson.org	37	16	1306665	1306665	+	Silent	SNP	A	A	G	rs3993988	bycluster;byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	1306665	A	G	1306665	2	3	701	1	0	0	0	0	0	0	0	1	16437	349	13	3		3	TPSD1	16	1306665	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	15396	1306665	89048088	65	42902											
DNAH3	55567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	21049160	21049160	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	21049160	C	A	21049160	4	1	701	1	0	0	0	0	0	1	0	0	4605	835	29	4	7592	4	DNAH3	16	21049160	Nonsense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	19742495	21049160	69305593	66	42903											
QPRT	23475	hgsc.bcm.edu	37	16	29706448	29706448	+	Silent	SNP	G	G	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	29706448	G	T	29706448	2	4	701	1	0	0	0	0	0	0	0	1	12889	1074	38	4		4	QPRT	16	29706448	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	8657288	29706448	60648305	67	42904											
ZFHX3	463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	72992269	72992269	+	Missense_Mutation	SNP	G	G	T	rs11075951	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	72992269	G	T	72992269	3	4	701	1	0	0	0	0	1	0	0	0	17646	1136	40	4	9371	4	ZFHX3	16	72992269	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	43285821	72992269	17362484	68	42905											
GALNS	2588	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	88889069	88889069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	88889069	T	C	88889069	3	2	701	1	0	0	0	0	1	0	0	0	6213	1493	52	3	288	3	GALNS	16	88889069	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	15896800	88889069	1465684	69	42906											
POLDIP2	26073	broad.mit.edu	37	17	26677558	26677558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	26677558	T	C	26677558	3	2	701	1	0	0	0	0	1	0	0	0	12201	1667	58	3	300	3	POLDIP2	17	26677558	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10		26677558	54517652	70	42907											
UTP6	55813	broad.mit.edu	37	17	30207665	30207665	+	Silent	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	30207665	T	C	30207665	2	2	701	1	0	0	0	0	0	0	0	1	17114	1606	56	3		3	UTP6	17	30207665	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	3530107	30207665	50987545	71	42908											
FAM134C	162427	ucsc.edu	37	17	40737279	40737279	+	Silent	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	40737279	A	G	40737279	2	3	701	1	0	0	0	0	0	0	0	1	5451	144	5	3		3	FAM134C	17	40737279	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	10529614	40737279	40457931	72	42909											
GJC1	10052	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	42882018	42882018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	42882018	C	A	42882018	3	1	701	1	0	0	0	0	1	0	0	0	6421	594	21	4	26	4	GJC1	17	42882018	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	2144739	42882018	38313192	73	42910											
SLC16A5	9121	bcgsc.ca	37	17	73102117	73102117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	73102117	A	G	73102117	3	3	701	1	0	0	0	0	1	0	0	0	14424	420	15	3	1525	3	SLC16A5	17	73102117	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	30220099	73102117	8093093	74	42911											
LMAN1	3998	bcgsc.ca	37	18	57000391	57000391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	57000391	A	G	57000391	3	3	701	1	0	0	0	0	1	0	0	0	8843	72	3	3	238	3	LMAN1	18	57000391	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10		57000391	21076857	75	42912											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	8966765	8966765	+	Silent	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	8966765	C	T	8966765	2	4	701	1	0	0	0	0	0	0	0	1	9980	755	27	1		1	MUC16	19	8966765	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10		8966765	50162218	76	42913											
SMARCA4	6597	broad.mit.edu	37	19	11096982	11096982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	11096982	A	G	11096982	3	3	701	1	0	0	0	0	1	0	0	0	14783	275	10	3	483	3	SMARCA4	19	11096982	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	2130217	11096982	48032001	77	42914											
SPTBN4	57731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	41003434	41003434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	41003434	A	G	41003434	3	3	701	1	0	0	0	0	1	0	0	0	15133	101	4	3	729	3	SPTBN4	19	41003434	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	29906452	41003434	18125549	78	42915											
CEACAM5	1048	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	19	42225041	42225041	+	Silent	SNP	C	C	G	rs149056934	alternate_allele	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	42225041	C	G	42225041	2	3	701	1	0	0	0	0	0	0	0	1	3197	900	32	4		4	CEACAM5	19	42225041	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	1221607	42225041	16903942	79	42916											
ZNF155	7711	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	44500350	44500350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	44500350	C	T	44500350	3	4	701	1	0	0	0	0	1	0	0	0	17748	913	32	2	355	2	ZNF155	19	44500350	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	2275309	44500350	14628633	80	42917											
LAIR1	3903	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	19	54875936	54875936	+	Silent	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	54875936	C	T	54875936	2	4	701	1	0	0	0	0	0	0	0	1	8609	724	25	2		2	LAIR1	19	54875936	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	10375586	54875936	4253047	81	42918											
FAM83D	81610	ucsc.edu	37	20	37555032	37555032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	37555032	A	G	37555032	3	3	701	1	0	0	0	0	1	0	0	0	5643	15	1	3	39	3	FAM83D	20	37555032	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10		37555032	25470488	82	42919											
MYH9	4627	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	36697638	36697638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	36697638	C	T	36697638	3	4	701	1	0	0	0	0	1	0	0	0	10049	913	32	2	3393	2	MYH9	22	36697638	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		36697638	14606928	83	42920											
TNRC6B	23112	broad.mit.edu	37	22	40552184	40552184	+	Silent	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	40552184	A	G	40552184	2	3	701	1	0	0	0	0	0	0	0	1	16353	40	2	3		3	TNRC6B	22	40552184	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	3854546	40552184	10752382	84	42921											
DNAJB7	150353	ucsc.edu;mdanderson.org;bcgsc.ca	37	22	41257713	41257713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	41257713	C	A	41257713	3	1	701	1	0	0	0	0	1	0	0	0	4627	478	17	4	647	4	DNAJB7	22	41257713	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	705529	41257713	10046853	85	42922											
PHKA1	5255	broad.mit.edu	37	X	71925084	71925084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	C	71925084	T	C	71925084	3	2	701	1	0	0	0	0	1	0	0	0	11850	1609	56	3	3543	3	PHKA1	23	71925084	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10		71925084	83345476	86	42923											
RLIM	51132	mdanderson.org	37	X	73811695	73811695	+	Silent	SNP	A	A	G	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	73811695	A	G	73811695	2	3	701	1	0	0	0	0	0	0	0	1	13403	40	2	3		3	RLIM	23	73811695	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	1886611	73811695	81458865	87	42924			3	123		4	3	67	N	G_C_A	1.894246e-08
RLIM	51132	mdanderson.org	37	X	73811739	73811739	+	Missense_Mutation	SNP	A	A	G	rs201164156		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	73811739	A	G	73811739	3	3	701	1	0	0	0	0	1	0	0	0	13403	246	9	3	467	3	RLIM	23	73811739	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	44	73811739	81458821	88	42925			3	123		4	3	67	N	G_C_A	1.894246e-08
RLIM	51132	mdanderson.org	37	X	73811755	73811755	+	Silent	SNP	C	C	G	rs7883332	bycluster;byfrequency;by1000genomes	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	G	73811755	C	G	73811755	2	3	701	1	0	0	0	0	0	0	0	1	13403	871	31	4		4	RLIM	23	73811755	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	16	73811755	81458805	89	42926	592	2	3	123		4	3	67	N	G_C_A	1.894246e-08
RLIM	51132	mdanderson.org	37	X	73811761	73811761	+	Silent	SNP	G	G	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	73811761	G	T	73811761	2	4	701	1	0	0	0	0	0	0	0	1	13403	1335	47	4		4	RLIM	23	73811761	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	6	73811761	81458799	90	42927	592	2	3	123		4	3	67	N	G_C_A	1.894246e-08
RGAG1	57529	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	109696984	109696984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	109696984	G	T	109696984	3	4	701	1	0	0	0	0	1	0	0	0	13287	971	34	4	3141	4	RGAG1	23	109696984	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	35885223	109696984	45573576	91	42928											
FLNA	2316	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	153588714	153588714	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	T	153588714	A	T	153588714	3	4	701	1	0	0	0	0	1	0	0	0	5940	246	9	5	4602	5	FLNA	23	153588714	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	43891730	153588714	1681846	92	42929											
IL9R	3581	mdanderson.org	37	X	155239602	155239602	+	Missense_Mutation	SNP	G	G	A	rs2228650	bycluster;bysubmitter	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4	A	155239602	G	A	155239602	3	1	701	1	0	0	0	0	1	0	0	0	7715	1145	40	1	1128	1	IL9R	23	155239602	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	1650888	155239602	30958	93	42930											
EXOSC10	5394	bcgsc.ca	37	1	11151122	11151122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	11151122	A	G	11151122	3	3	702	1	0	0	0	0	1	0	0	0	5316	101	4	3	2149	3	EXOSC10	1	11151122	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10		11151122	238099499	1	42931											
SPEN	23013	hgsc.bcm.edu;ucsc.edu	37	1	16256119	16256119	+	Silent	SNP	C	C	T	rs140864111	bycluster;byfrequency;by1000genomes	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	16256119	C	T	16256119	2	4	702	1	0	0	0	0	0	0	0	1	15050	535	19	1		1	SPEN	1	16256119	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	5104997	16256119	232994502	2	42932											
CSMD2	114784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	34209065	34209065	+	Silent	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	34209065	A	G	34209065	2	3	702	1	0	0	0	0	0	0	0	1	3947	126	5	3		3	CSMD2	1	34209065	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	17952946	34209065	215041556	3	42933											
CYP4X1	260293	bcgsc.ca	37	1	47498964	47498964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	47498964	T	C	47498964	3	2	702	1	0	0	0	0	1	0	0	0	4195	1522	53	3	430	3	CYP4X1	1	47498964	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	13289899	47498964	201751657	4	42934											
SYT6	148281	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	114680520	114680520	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	114680520	T	G	114680520	3	3	702	1	0	0	0	0	1	0	0	0	15490	1609	56	5	884	5	SYT6	1	114680520	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	67181556	114680520	134570101	5	42935											
NRAS	4893	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	rs121913254	bycluster	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	115256530	G	T	115256530	3	4	702	1	0	0	0	0	1	0	0	0	10647	1386	48	4	400	4	NRAS	1	115256530	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	576010	115256530	133994091	6	42936											
FLG	2312	mdanderson.org	37	1	152284806	152284806	+	Silent	SNP	C	C	T	rs71625190		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	152284806	C	T	152284806	2	4	702	1	0	0	0	0	0	0	0	1	5929	738	26	2		2	FLG	1	152284806	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	37028276	152284806	96965815	7	42937											
CRNN	49860	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	152382811	152382811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	152382811	C	A	152382811	3	1	702	1	0	0	0	0	1	0	0	0	3894	912	32	4	744	4	CRNN	1	152382811	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	98005	152382811	96867810	8	42938											
EFNA4	1945	hgsc.bcm.edu;mdanderson.org	37	1	155036407	155036407	+	Silent	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	155036407	C	T	155036407	2	4	702	1	0	0	0	0	0	0	0	1	4955	506	18	2		2	EFNA4	1	155036407	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	2653596	155036407	94214214	9	42939											
SPTA1	6708	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	158596633	158596633	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	158596633	C	T	158596633	4	4	702	1	0	0	0	0	0	1	0	0	15128	856	30	2	1478	2	SPTA1	1	158596633	Nonsense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	3560226	158596633	90653988	10	42940											
COPA	1314	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	1	160275563	160275563	+	Silent	SNP	C	C	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	160275563	C	G	160275563	2	3	702	1	0	0	0	0	0	0	0	1	3729	869	30	4		4	COPA	1	160275563	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	1678930	160275563	88975058	11	42941											
GPR161	23432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	168066296	168066296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	168066296	G	T	168066296	3	4	702	1	0	0	0	0	1	0	0	0	6672	1252	44	4	1056	4	GPR161	1	168066296	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	7790733	168066296	81184325	12	42942											
FMO3	2328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	171072967	171072967	+	Silent	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	171072967	C	T	171072967	2	4	702	1	0	0	0	0	0	0	0	1	5963	900	32	2		2	FMO3	1	171072967	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	3006671	171072967	78177654	13	42943											
PAPPA2	60676	hgsc.bcm.edu;ucsc.edu	37	1	176709219	176709219	+	Silent	SNP	A	A	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	176709219	A	C	176709219	2	2	702	1	0	0	0	0	0	0	0	1	11440	204	8	5		5	PAPPA2	1	176709219	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	5636252	176709219	72541402	14	42944											
F13B	2165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	197026583	197026583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	197026583	C	T	197026583	3	4	702	1	0	0	0	0	1	0	0	0	5343	913	32	2	1195	2	F13B	1	197026583	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	20317364	197026583	52224038	15	42945											
TIMM17A	10440	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	201934576	201934576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	201934576	T	C	201934576	3	2	702	1	0	0	0	0	1	0	0	0	15920	1464	51	3	353	3	TIMM17A	1	201934576	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	4907993	201934576	47316045	16	42946											
OBSCN	84033	mdanderson.org;bcgsc.ca	37	1	228433197	228433197	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	228433197	G	C	228433197	3	2	702	1	0	0	0	0	1	0	0	0	10819	1291	45	4	3607	4	OBSCN	1	228433197	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	26498621	228433197	20817424	17	42947											
OR2T27	403239	mdanderson.org	37	1	248813271	248813271	+	Silent	SNP	C	C	A	rs2802081	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	248813271	C	A	248813271	2	1	702	1	0	0	0	0	0	0	0	1	11028	581	21	4		4	OR2T27	1	248813271	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	20380074	248813271	437350	18	42948											
WDR35	57539	hgsc.bcm.edu;ucsc.edu	37	2	20189771	20189771	+	Silent	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	20189771	G	A	20189771	2	1	702	1	0	0	0	0	0	0	0	1	17301	933	33	2		2	WDR35	2	20189771	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10		20189771	223009602	19	42949											
EPT1	85465	broad.mit.edu;mdanderson.org	37	2	26596325	26596325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	26596325	T	C	26596325	3	2	702	1	0	0	0	0	1	0	0	0	5201	1725	60	3	419	3	EPT1	2	26596325	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	6406554	26596325	216603048	20	42950											
FOXN2	3344	broad.mit.edu	37	2	48602092	48602092	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	-	48602092	A	-	48602092	7	5	702	1	0	1	0	1	0	0	0	0	6027	130	5	0	824	0	FOXN2	2	48602092	Frame_Shift_Del	DEL	A	TCGA-KN-8427-01A-11D-2310-10	22005767	48602092	194597281	21	42951											
AFTPH	54812	broad.mit.edu	37	2	64779179	64779179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	64779179	A	G	64779179	3	3	702	1	0	0	0	0	1	0	0	0	364	43	2	3	573	3	AFTPH	2	64779179	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	16177087	64779179	178420194	22	42952											
RMND5A	64795	bcgsc.ca	37	2	86993084	86993084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	86993084	A	G	86993084	3	3	702	1	0	0	0	0	1	0	0	0	13410	275	10	3	813	3	RMND5A	2	86993084	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	22213905	86993084	156206289	23	42953											
PROM2	150696	broad.mit.edu	37	2	95944771	95944771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	95944771	A	G	95944771	3	3	702	1	0	0	0	0	1	0	0	0	12566	295	11	3	1191	3	PROM2	2	95944771	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	8951687	95944771	147254602	24	42954											
KYNU	8942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	143713785	143713785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	143713785	A	G	143713785	3	3	702	1	0	0	0	0	1	0	0	0	8594	72	3	3	467	3	KYNU	2	143713785	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	47769014	143713785	99485588	25	42955											
MBD5	55777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	149247532	149247532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	149247532	A	C	149247532	3	2	702	1	0	0	0	0	1	0	0	0	9354	72	3	5	3658	5	MBD5	2	149247532	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	5533747	149247532	93951841	26	42956											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	179437087	179437087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	179437087	A	G	179437087	3	3	702	1	0	0	0	0	1	0	0	0	16747	246	9	3	34355	3	TTN	2	179437087	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	30189555	179437087	63762286	27	42957											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	2	179644742	179644742	+	Silent	SNP	A	A	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	179644742	A	C	179644742	2	2	702	1	0	0	0	0	0	0	0	1	16747	59	3	5		5	TTN	2	179644742	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	207655	179644742	63554631	28	42958											
ARL4C	10123	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	235404686	235404686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	235404686	C	T	235404686	3	4	702	1	0	0	0	0	1	0	0	0	937	768	27	1	37	1	ARL4C	2	235404686	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	55759944	235404686	7794687	29	42959											
GRM7	2917	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	7620544	7620544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	7620544	G	C	7620544	3	2	702	1	0	0	0	0	1	0	0	0	6809	942	33	4	1981	4	GRM7	3	7620544	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10		7620544	190401886	30	42960											
ZNF445	353274	broad.mit.edu	37	3	44489837	44489837	+	Silent	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	44489837	C	T	44489837	2	4	702	1	0	0	0	0	0	0	0	1	17930	610	22	2		2	ZNF445	3	44489837	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	36869293	44489837	153532593	31	42961											
SCAP	22937	broad.mit.edu	37	3	47462126	47462126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	47462126	G	A	47462126	3	1	702	1	0	0	0	0	1	0	0	0	13890	1174	41	2	2406	2	SCAP	3	47462126	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	2972289	47462126	150560304	32	42962											
ABI3BP	25890	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	100515270	100515270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	100515270	A	G	100515270	3	3	702	1	0	0	0	0	1	0	0	0	91	275	10	3	1497	3	ABI3BP	3	100515270	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	53053144	100515270	97507160	33	42963											
WWTR1	25937	mdanderson.org	37	3	149374873	149374873	+	Missense_Mutation	SNP	G	G	T	rs1055153	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	149374873	G	T	149374873	3	4	702	1	0	0	0	0	1	0	0	0	17429	1116	39	4	1005	4	WWTR1	3	149374873	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	48859603	149374873	48647557	34	42964											
GPR87	53836	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	151012813	151012813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	151012813	G	A	151012813	3	1	702	1	0	0	0	0	1	0	0	0	6723	1261	44	2	859	2	GPR87	3	151012813	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	1637940	151012813	47009617	35	42965											
MUC4	4585	broad.mit.edu;mdanderson.org	37	3	195510911	195510911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	195510911	G	A	195510911	3	1	702	1	0	0	0	0	1	0	0	0	9985	1261	44	2		2	MUC4	3	195510911	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	44498098	195510911	2511519	36	42966											
MUC4	4585	mdanderson.org	37	3	195511547	195511547	+	Missense_Mutation	SNP	C	C	T	rs74542179		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	195511547	C	T	195511547	3	4	702	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195511547	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	636	195511547	2510883	37	42967											
FGFBP2	83888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	15964500	15964500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	15964500	C	T	15964500	3	4	702	1	0	0	0	0	1	0	0	0	5868	768	27	1	422	1	FGFBP2	4	15964500	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		15964500	175189776	38	42968											
LEF1	51176	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	109084842	109084842	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	109084842	C	G	109084842	3	3	702	1	0	0	0	0	1	0	0	0	8721	855	30	4	1023	4	LEF1	4	109084842	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	93120342	109084842	82069434	39	42969											
MARCH1	55016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	164466780	164466780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	164466780	G	C	164466780	3	2	702	1	0	0	0	0	1	0	0	0	9305	1377	48	4	338	4	MARCH1	4	164466780	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	55381938	164466780	26687496	40	42970											
FRG1	2483	mdanderson.org	37	4	190878571	190878571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	190878571	G	A	190878571	3	1	702	1	0	0	0	0	1	0	0	0	6053	1203	42	2	473	2	FRG1	4	190878571	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	26411791	190878571	275705	41	42971											
MAP1B	4131	bcgsc.ca	37	5	71493198	71493198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	71493198	C	T	71493198	3	4	702	1	0	0	0	0	1	0	0	0	9235	913	32	2	4034	2	MAP1B	5	71493198	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		71493198	109422062	42	42972											
MCTP1	79772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	94046552	94046552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	94046552	A	C	94046552	3	2	702	1	0	0	0	0	1	0	0	0	9407	101	4	5	210	5	MCTP1	5	94046552	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	22553354	94046552	86868708	43	42973											
SEMA6A	57556	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	115840607	115840607	+	Missense_Mutation	SNP	G	G	C	rs36105994	bycluster;by1000genomes;alternate_allele	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	115840607	G	C	115840607	3	2	702	1	0	0	0	0	1	0	0	0	14052	1020	36	4	3130	4	SEMA6A	5	115840607	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	21794055	115840607	65074653	44	42974											
CPLX2	10814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	175306003	175306003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	175306003	C	T	175306003	3	4	702	1	0	0	0	0	1	0	0	0	3807	759	27	1	130	1	CPLX2	5	175306003	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	59465396	175306003	5609257	45	42975											
HIST1H2BD	3017	broad.mit.edu	37	6	26158611	26158611	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	26158611	G	C	26158611	3	2	702	1	0	0	0	0	1	0	0	0	7150	1059	37	4	216	4	HIST1H2BD	6	26158611	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10		26158611	144956456	46	42976											
MUC21	394263	mdanderson.org	37	6	30954921	30954921	+	Silent	SNP	C	C	G	rs148418523	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	30954921	C	G	30954921	2	3	702	1	0	0	0	0	0	0	0	1	9984	668	24	4		4	MUC21	6	30954921	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	4796310	30954921	140160146	47	42977											
TTBK1	84630	mdanderson.org	37	6	43251912	43251912	+	Missense_Mutation	SNP	A	A	G	rs3800297	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	43251912	A	G	43251912	3	3	702	1	0	0	0	0	1	0	0	0	16688	72	3	3	3484	3	TTBK1	6	43251912	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	12296991	43251912	127863155	48	42978											
RFX6	222546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	117248566	117248566	+	Silent	SNP	G	G	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	117248566	G	T	117248566	2	4	702	1	0	0	0	0	0	0	0	1	13280	1132	40	4		4	RFX6	6	117248566	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10	73996654	117248566	53866501	49	42979											
C7orf57	136288	ucsc.edu	37	7	48080990	48080990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	48080990	T	C	48080990	3	2	702	1	0	0	0	0	1	0	0	0	2406	1667	58	3	121	3	C7orf57	7	48080990	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10		48080990	111057673	50	42980											
SRCRB4D	136853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	76021323	76021323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	76021323	C	G	76021323	3	3	702	1	0	0	0	0	1	0	0	0	15149	594	21	4	366	4	SRCRB4D	7	76021323	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	27940333	76021323	83117340	51	42981											
SEMA3A	10371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	83590705	83590705	+	Silent	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	83590705	C	T	83590705	2	4	702	1	0	0	0	0	0	0	0	1	14037	622	22	2		2	SEMA3A	7	83590705	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	7569382	83590705	75547958	52	42982											
ANKRD7	56311	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	117876137	117876137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	117876137	C	T	117876137	3	4	702	1	0	0	0	0	1	0	0	0	686	855	30	2	525	2	ANKRD7	7	117876137	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	34285432	117876137	41262526	53	42983											
NOM1	64434	broad.mit.edu	37	7	156752565	156752567	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	-	156752567	GGC	-	156752565	7	5	702	1	0	1	0	1	0	0	0	0	10537	991	35	0	1343	0	NOM1	7	156752565	In_Frame_Del	DEL	GGC	TCGA-KN-8427-01A-11D-2310-10	38876428	156752565	2386098	54	42984	593	4									
NOM1	64434	bcgsc.ca	37	7	156752566	156752568	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	-	156752568	GGC	-	156752566	7	5	702	1	0	1	0	1	0	0	0	0	10537	1203	42	0	1344	0	NOM1	7	156752566	In_Frame_Del	DEL	GGC	TCGA-KN-8427-01A-11D-2310-10	1	156752566	2386097	55	42985	593	4									
NOM1	64434	broad.mit.edu	37	7	156752569	156752570	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	-	156752570	GT	-	156752569	7	5	702	1	0	1	0	1	0	0	0	0	10537	1029	36	0	1347	0	NOM1	7	156752569	Frame_Shift_Del	DEL	GT	TCGA-KN-8427-01A-11D-2310-10	3	156752569	2386094	56	42986	593	4									
NOM1	64434	bcgsc.ca	37	7	156752570	156752571	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	-	156752571	GT	-	156752570	7	5	702	1	0	1	0	1	0	0	0	0	10537	1696	59	0	1348	0	NOM1	7	156752570	Frame_Shift_Del	DEL	GT	TCGA-KN-8427-01A-11D-2310-10	1	156752570	2386093	57	42987	593	4									
SCARA5	286133	mdanderson.org	37	8	27779545	27779545	+	Silent	SNP	C	C	T	rs10103504	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	27779545	C	T	27779545	2	4	702	1	0	0	0	0	0	0	0	1	13893	465	17	2		2	SCARA5	8	27779545	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		27779545	118584477	58	42988											
PABPC1	26986	broad.mit.edu	37	8	101724623	101724624	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	101724624	-	A	101724623	7	5	702	1	0	1	1	0	0	0	0	0	11370	564	20	0	1003	0	PABPC1	8	101724623	Frame_Shift_Ins	INS	-	TCGA-KN-8427-01A-11D-2310-10	73945078	101724623	44639399	59	42989	594	2									
PABPC1	26986	broad.mit.edu	37	8	101724626	101724627	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	-	101724627	TT	-	101724626	7	5	702	1	0	1	0	1	0	0	0	0	11370	1606	56	0	1006	0	PABPC1	8	101724626	Frame_Shift_Del	DEL	TT	TCGA-KN-8427-01A-11D-2310-10	3	101724626	44639396	60	42990	594	2									
DCAF13	25879	hgsc.bcm.edu	37	8	104427572	104427572	+	Silent	SNP	T	T	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	104427572	T	A	104427572	2	1	702	1	0	0	0	0	0	0	0	1	4268	1567	55	5		5	DCAF13	8	104427572	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	2702946	104427572	41936450	61	42991											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	110530424	110530424	+	Silent	SNP	T	T	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	110530424	T	C	110530424	2	2	702	1	0	0	0	0	0	0	0	1	11979	1567	55	3		3	PKHD1L1	8	110530424	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	6102852	110530424	35833598	62	42992											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	8	113988244	113988244	+	Silent	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	113988244	A	G	113988244	2	3	702	1	0	0	0	0	0	0	0	1	3948	446	16	3		3	CSMD3	8	113988244	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	3457820	113988244	32375778	63	42993											
CYP11B1	1584	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	143958438	143958438	+	Splice_Site	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	143958438	C	T	143958438	5	4	702	1	0	0	0	0	0	0	1	0	4147	521	18	2	943	2	CYP11B1	8	143958438	Splice_Site	SNP	C	TCGA-KN-8427-01A-11D-2310-10	29970194	143958438	2405584	64	42994											
PLEC	5339	mdanderson.org	37	8	144996029	144996029	+	Missense_Mutation	SNP	A	A	G	rs7833924	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	144996029	A	G	144996029	3	3	702	1	0	0	0	0	1	0	0	0	12059	275	10	3	5687	3	PLEC	8	144996029	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	1037591	144996029	1367993	65	42995											
C9orf72	203228	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	27556771	27556771	+	Silent	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	27556771	C	T	27556771	2	4	702	1	0	0	0	0	0	0	0	1	2497	697	25	2		2	C9orf72	9	27556771	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		27556771	113656660	66	42996											
CNTNAP3	79937	mdanderson.org	37	9	39177438	39177438	+	Silent	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	39177438	G	A	39177438	2	1	702	1	0	0	0	0	0	0	0	1	3650	1136	40	1		1	CNTNAP3	9	39177438	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10	11620667	39177438	102035993	67	42997											
ROR2	4920	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	94487339	94487339	+	Silent	SNP	C	C	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	94487339	C	G	94487339	2	3	702	1	0	0	0	0	0	0	0	1	13540	581	21	4		4	ROR2	9	94487339	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	55309901	94487339	46726092	68	42998											
GARNL3	84253	broad.mit.edu	37	9	130075815	130075815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	130075815	C	T	130075815	3	4	702	1	0	0	0	0	1	0	0	0	6248	652	23	1	429	1	GARNL3	9	130075815	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	35588476	130075815	11137616	69	42999											
PPAPDC3	84814	mdanderson.org	37	9	134183379	134183379	+	Missense_Mutation	SNP	C	C	T	rs2966332	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	134183379	C	T	134183379	3	4	702	1	0	0	0	0	1	0	0	0	12303	536	19	1	527	1	PPAPDC3	9	134183379	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	4107564	134183379	7030052	70	43000											
DCLRE1C	64421	ucsc.edu;mdanderson.org;bcgsc.ca	37	10	14951197	14951197	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	14951197	C	G	14951197	3	3	702	1	0	0	0	0	1	0	0	0	4298	913	32	4	793	4	DCLRE1C	10	14951197	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		14951197	120583550	71	43001											
C10orf114	399726	broad.mit.edu	37	10	21784654	21784655	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	21784655	-	C	21784654	7	5	702	1	0	1	1	0	0	0	0	0	1587	1203	42	0	128	0	C10orf114	10	21784654	Frame_Shift_Ins	INS	-	TCGA-KN-8427-01A-11D-2310-10	6833457	21784654	113750093	72	43002											
KIAA1462	57608	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	30318485	30318485	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	30318485	G	A	30318485	4	1	702	1	0	0	0	0	0	1	0	0	8241	1328	46	2	3495	2	KIAA1462	10	30318485	Nonsense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	8533831	30318485	105216262	73	43003											
RTKN2	219790	hgsc.bcm.edu;mdanderson.org	37	10	63957976	63957976	+	Silent	SNP	A	A	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	63957976	A	C	63957976	2	2	702	1	0	0	0	0	0	0	0	1	13736	291	11	5		5	RTKN2	10	63957976	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	33639491	63957976	71576771	74	43004											
DDX50	79009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	70702984	70702984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	70702984	G	C	70702984	3	2	702	1	0	0	0	0	1	0	0	0	4370	1377	48	4	1960	4	DDX50	10	70702984	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	6745008	70702984	64831763	75	43005											
TYSND1	219743	mdanderson.org	37	10	71906150	71906150	+	Missense_Mutation	SNP	T	T	C	rs4746970	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	71906150	T	C	71906150	3	2	702	1	0	0	0	0	1	0	0	0	16829	1667	58	3	1523	3	TYSND1	10	71906150	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	1203166	71906150	63628597	76	43006											
CYP2C9	1559	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	96748762	96748762	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	96748762	C	T	96748762	4	4	702	1	0	0	0	0	0	1	0	0	4170	595	21	2	1484	2	CYP2C9	10	96748762	Nonsense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	24842612	96748762	38785985	77	43007											
UBTD1	80019	hgsc.bcm.edu	37	10	99329915	99329915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	99329915	G	A	99329915	3	1	702	1	0	0	0	0	1	0	0	0	16919	1058	37	1	329	1	UBTD1	10	99329915	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	2581153	99329915	36204832	78	43008											
DCLRE1A	9937	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	115609249	115609249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	115609249	G	A	115609249	3	1	702	1	0	0	0	0	1	0	0	0	4296	1203	42	2	1539	2	DCLRE1A	10	115609249	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	16279334	115609249	19925498	79	43009											
MUC6	4588	mdanderson.org	37	11	1018262	1018262	+	Missense_Mutation	SNP	G	G	T	rs78003962	alternate_allele	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	1018262	G	T	1018262	3	4	702	1	0	0	0	0	1	0	0	0	9987	1368	48	4	2792	4	MUC6	11	1018262	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10		1018262	133988254	80	43010											
MUC5B	727897	broad.mit.edu	37	11	1271712	1271713	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	1271713	-	C	1271712	7	5	702	1	0	1	1	0	0	0	0	0	9986	1183	41	0	13733	0	MUC5B	11	1271712	Frame_Shift_Ins	INS	-	TCGA-KN-8427-01A-11D-2310-10	253450	1271712	133734804	81	43011											
BRSK2	9024	broad.mit.edu;hgsc.bcm.edu	37	11	1466625	1466625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	1466625	G	A	1466625	3	1	702	1	0	0	0	0	1	0	0	0	1526	971	34	2	952	2	BRSK2	11	1466625	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	194913	1466625	133539891	82	43012											
MS4A5	64232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	60198312	60198312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	60198312	T	G	60198312	3	3	702	1	0	0	0	0	1	0	0	0	9870	1725	60	5	203	5	MS4A5	11	60198312	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	58731687	60198312	74808204	83	43013											
MACROD1	28992	mdanderson.org	37	11	63767186	63767186	+	Silent	SNP	A	A	G	rs709594	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	63767186	A	G	63767186	2	3	702	1	0	0	0	0	0	0	0	1	9152	272	10	3		3	MACROD1	11	63767186	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	3568874	63767186	71239330	84	43014											
GAL3ST3	89792	hgsc.bcm.edu;mdanderson.org	37	11	65811123	65811124	+	Missense_Mutation	DNP	AG	AG	CT	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	CT	65811124	AG	CT	65811123	3	2	702	1	0	0	0	0	1	0	0	0	6206	188	7	5	1148	5	GAL3ST3	11	65811123	Missense_Mutation	DNP	AG	TCGA-KN-8427-01A-11D-2310-10	2043937	65811123	69195393	85	43015	595	2									
GAL3ST3	89792	broad.mit.edu;bcgsc.ca	37	11	65811124	65811124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	65811124	G	T	65811124	3	4	702	1	0	0	0	0	1	0	0	0	6206	962	34	4	1149	4	GAL3ST3	11	65811124	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	1	65811124	69195392	86	43016	595	2									
MMP12	4321	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	102737125	102737125	+	Silent	SNP	A	A	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	102737125	A	C	102737125	2	2	702	1	0	0	0	0	0	0	0	1	9658	59	3	5		5	MMP12	11	102737125	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	36926001	102737125	32269391	87	43017											
GRIA4	2893	ucsc.edu;mdanderson.org;bcgsc.ca	37	11	105776029	105776029	+	Splice_Site	SNP	T	T	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	105776029	T	G	105776029	5	3	702	1	0	0	0	0	0	0	1	0	6777	1710	59	5	1190	5	GRIA4	11	105776029	Splice_Site	SNP	T	TCGA-KN-8427-01A-11D-2310-10	3038904	105776029	29230487	88	43018											
NTM	50863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	132081945	132081945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	132081945	G	T	132081945	3	4	702	1	0	0	0	0	1	0	0	0	10706	942	33	4	526	4	NTM	11	132081945	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	26305916	132081945	2924571	89	43019											
A2M	2	bcgsc.ca	37	12	9253745	9253745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	9253745	T	C	9253745	3	2	702	1	0	0	0	0	1	0	0	0	4	1783	62	3	2967	3	A2M	12	9253745	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10		9253745	124598150	90	43020											
PRB2	653247	mdanderson.org	37	12	11546378	11546378	+	Missense_Mutation	SNP	G	G	A	rs200759746		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	11546378	G	A	11546378	3	1	702	1	0	0	0	0	1	0	0	0	12453	1261	44	2	620	2	PRB2	12	11546378	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	2292633	11546378	122305517	91	43021											
ALG10B	144245	broad.mit.edu	37	12	38714025	38714025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	-	38714025	T	-	38714025	7	5	702	1	0	1	0	1	0	0	0	0	512	1500	52	0	442	0	ALG10B	12	38714025	Frame_Shift_Del	DEL	T	TCGA-KN-8427-01A-11D-2310-10	27167647	38714025	95137870	92	43022											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	53670499	53670499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	53670499	C	G	53670499	3	3	702	1	0	0	0	0	1	0	0	0	5255	565	20	4	1822	4	ESPL1	12	53670499	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	14956474	53670499	80181396	93	43023											
LATS2	26524	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	21557476	21557476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	21557476	C	T	21557476	3	4	702	1	0	0	0	0	1	0	0	0	8654	884	31	1	913	1	LATS2	13	21557476	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		21557476	93612402	94	43024											
KIF26A	26153	mdanderson.org	37	14	104642341	104642341	+	Silent	SNP	A	A	G	rs2487304	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	104642341	A	G	104642341	2	3	702	1	0	0	0	0	0	0	0	1	8301	175	7	3		3	KIF26A	14	104642341	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10		104642341	2707199	95	43025											
AGBL1	123624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	86808034	86808034	+	Silent	SNP	C	C	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	86808034	C	A	86808034	2	1	702	1	0	0	0	0	0	0	0	1	375	610	22	4		4	AGBL1	15	86808034	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		86808034	15723358	96	43026											
DNAH9	1770	hgsc.bcm.edu	37	17	11540080	11540080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	11540080	G	A	11540080	3	1	702	1	0	0	0	0	1	0	0	0	4610	1145	40	1	1799	1	DNAH9	17	11540080	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10		11540080	69655130	97	43027											
TMUB2	79089	ucsc.edu;mdanderson.org	37	17	42268154	42268154	+	Silent	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	42268154	C	T	42268154	2	4	702	1	0	0	0	0	0	0	0	1	16277	825	29	2		2	TMUB2	17	42268154	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	30728074	42268154	38927056	98	43028											
SP2	6668	broad.mit.edu;mdanderson.org	37	17	46000417	46000417	+	Silent	SNP	C	C	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	46000417	C	G	46000417	2	3	702	1	0	0	0	0	0	0	0	1	14977	668	24	4		4	SP2	17	46000417	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	3732263	46000417	35194793	99	43029											
ITGA3	3675	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	48154412	48154412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	48154412	C	G	48154412	3	3	702	1	0	0	0	0	1	0	0	0	7884	855	30	4	2055	4	ITGA3	17	48154412	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	2153995	48154412	33040798	100	43030											
COL1A1	1277	broad.mit.edu;bcgsc.ca	37	17	48267232	48267232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	48267232	G	C	48267232	3	2	702	1	0	0	0	0	1	0	0	0	3679	1078	38	4	1853	4	COL1A1	17	48267232	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	112820	48267232	32927978	101	43031											
ABCA6	23460	mdanderson.org	37	17	67092895	67092895	+	Silent	SNP	A	A	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	67092895	A	C	67092895	2	2	702	1	0	0	0	0	0	0	0	1	36	59	3	5		5	ABCA6	17	67092895	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	18825663	67092895	14102315	102	43032											
KIF19	124602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	72348987	72348987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	72348987	G	A	72348987	3	1	702	1	0	0	0	0	1	0	0	0	8289	971	34	2	2066	2	KIF19	17	72348987	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	5256092	72348987	8846223	103	43033											
BAIAP2	10458	broad.mit.edu	37	17	79080558	79080558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	79080558	A	G	79080558	3	3	702	1	0	0	0	0	1	0	0	0	1301	247	9	3	1397	3	BAIAP2	17	79080558	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	6731571	79080558	2114652	104	43034											
FSCN2	25794	mdanderson.org	37	17	79495969	79495969	+	Missense_Mutation	SNP	C	C	T	rs143796236		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	79495969	C	T	79495969	3	4	702	1	0	0	0	0	1	0	0	0	6075	594	21	2	414	2	FSCN2	17	79495969	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	415411	79495969	1699241	105	43035											
DSG2	1829	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	29122688	29122688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	29122688	C	T	29122688	3	4	702	1	0	0	0	0	1	0	0	0	4779	478	17	2	2261	2	DSG2	18	29122688	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		29122688	48954560	106	43036											
HCN2	610	mdanderson.org	37	19	613898	613898	+	Silent	SNP	T	T	C	rs1054786	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	613898	T	C	613898	2	2	702	1	0	0	0	0	0	0	0	1	7004	1567	55	3		3	HCN2	19	613898	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10		613898	58515085	107	43037											
MUC16	94025	mdanderson.org	37	19	8999441	8999441	+	Silent	SNP	G	G	A	rs80293661		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	8999441	G	A	8999441	2	1	702	1	0	0	0	0	0	0	0	1	9980	1280	45	2		2	MUC16	19	8999441	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10	8385543	8999441	50129542	108	43038											
ATG4D	84971	bcgsc.ca	37	19	10654987	10654987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	10654987	A	G	10654987	3	3	702	1	0	0	0	0	1	0	0	0	1099	43	2	3	223	3	ATG4D	19	10654987	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	1655546	10654987	48473996	109	43039											
ZNF563	147837	broad.mit.edu	37	19	12433413	12433423	+	Frame_Shift_Del	DEL	TTCCTGATGGT	TTCCTGATGGT	-	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	TTCCTGATGGT	TTCCTGATGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	-	12433423	TTCCTGATGGT	-	12433413	7	5	702	1	0	1	0	1	0	0	0	0	18006	1725	60	0	1326	0	ZNF563	19	12433413	Frame_Shift_Del	DEL	TTCCTGATGGT	TCGA-KN-8427-01A-11D-2310-10	1778426	12433413	46695570	110	43040	596	2									
ZNF563	147837	bcgsc.ca	37	19	12433414	12433424	+	Frame_Shift_Del	DEL	TTCCTGATGGT	TTCCTGATGGT	-	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	TTCCTGATGGT	TTCCTGATGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	-	12433424	TTCCTGATGGT	-	12433414	7	5	702	1	0	1	0	1	0	0	0	0	18006	1783	62	0	1327	0	ZNF563	19	12433414	Frame_Shift_Del	DEL	TTCCTGATGGT	TCGA-KN-8427-01A-11D-2310-10	1	12433414	46695569	111	43041	596	2									
ZNF799	90576	mdanderson.org	37	19	12502998	12502998	+	Missense_Mutation	SNP	C	C	T	rs17846016		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	12502998	C	T	12502998	3	4	702	1	0	0	0	0	1	0	0	0	18178	478	17	2	1721	2	ZNF799	19	12502998	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	69584	12502998	46625985	112	43042											
PRDX2	7001	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	12911998	12911998	+	Silent	SNP	T	T	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	12911998	T	C	12911998	2	2	702	1	0	0	0	0	0	0	0	1	12475	1606	56	3		3	PRDX2	19	12911998	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	409000	12911998	46216985	113	43043											
CYP4F11	57834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	16025181	16025181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	16025181	C	T	16025181	3	4	702	1	0	0	0	0	1	0	0	0	4188	536	19	1	251	1	CYP4F11	19	16025181	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	3113183	16025181	43103802	114	43044											
UNC13A	23025	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	17756839	17756839	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	17756839	T	G	17756839	3	3	702	1	0	0	0	0	1	0	0	0	16996	1609	56	5	3089	5	UNC13A	19	17756839	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	1731658	17756839	41372144	115	43045											
ANKRD27	84079	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	19	33113433	33113433	+	Silent	SNP	G	G	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	33113433	G	T	33113433	2	4	702	1	0	0	0	0	0	0	0	1	655	958	34	4		4	ANKRD27	19	33113433	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10	15356594	33113433	26015550	116	43046											
CADM4	199731	ucsc.edu	37	19	44130965	44130965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	44130965	C	T	44130965	3	4	702	1	0	0	0	0	1	0	0	0	2571	768	27	1	720	1	CADM4	19	44130965	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	11017532	44130965	14998018	117	43047											
NAPA	8775	ucsc.edu	37	19	47991552	47991552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	47991552	A	G	47991552	3	3	702	1	0	0	0	0	1	0	0	0	10168	188	7	3	10	3	NAPA	19	47991552	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	3860587	47991552	11137431	118	43048											
ZNF667	63934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	56952705	56952705	+	Silent	SNP	T	T	C	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	56952705	T	C	56952705	2	2	702	1	0	0	0	0	0	0	0	1	18086	1722	60	3		3	ZNF667	19	56952705	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	8961153	56952705	2176278	119	43049											
DDRGK1	65992	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	3172425	3172425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	3172425	C	A	3172425	3	1	702	1	0	0	0	0	1	0	0	0	4340	623	22	4	241	4	DDRGK1	20	3172425	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		3172425	59853095	120	43050											
WISP2	8839	mdanderson.org	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	43348735	C	A	43348735	2	1	702	1	0	0	0	0	0	0	0	1	17385	726	26	4		4	WISP2	20	43348735	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	40176310	43348735	19676785	121	43051											
DIDO1	11083	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	61525220	61525220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	A	61525220	C	A	61525220	3	1	702	1	0	0	0	0	1	0	0	0	4524	855	30	4	3872	4	DIDO1	20	61525220	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	18176485	61525220	1500300	122	43052											
PFKL	5211	hgsc.bcm.edu	37	21	45744402	45744402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	45744402	C	T	45744402	3	4	702	1	0	0	0	0	1	0	0	0	11771	893	31	1	1745	1	PFKL	21	45744402	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		45744402	2385493	123	43053											
TTLL12	23170	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	22	43565506	43565506	+	Silent	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	43565506	C	T	43565506	2	4	702	1	0	0	0	0	0	0	0	1	16737	695	24	2		2	TTLL12	22	43565506	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		43565506	7739060	124	43054											
PRR5	55615	mdanderson.org	37	22	45132785	45132785	+	Silent	SNP	T	T	C	rs6006865	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	C	45132785	T	C	45132785	2	2	702	1	0	0	0	0	0	0	0	1	12610	1625	57	3		3	PRR5	22	45132785	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	1567279	45132785	6171781	125	43055											
XPNPEP2	7512	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	128886303	128886303	+	Silent	SNP	C	C	T	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	T	128886303	C	T	128886303	2	4	702	1	0	0	0	0	0	0	0	1	17455	903	32	2		2	XPNPEP2	23	128886303	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		128886303	26384257	126	43056											
GPR101	83550	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	136112626	136112626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	G	136112626	A	G	136112626	3	3	702	1	0	0	0	0	1	0	0	0	6629	333	12	3	321	3	GPR101	23	136112626	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	7226323	136112626	19157934	127	43057											
ABCD1	215	mdanderson.org	37	X	153006092	153006093	+	Missense_Mutation	DNP	CA	CA	TG	rs201878013		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b	TG	153006093	CA	TG	153006092	3	4	702	1	0	0	0	0	1	0	0	0	60	711	25	2	1725	2	ABCD1	23	153006092	Missense_Mutation	DNP	CA	TCGA-KN-8427-01A-11D-2310-10	16893466	153006092	2264468	128	43058											
HES4	57801	broad.mit.edu;mdanderson.org	37	1	934923	934923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	934923	C	T	934923	3	4	703	1	0	0	0	0	1	0	0	0	7075	536	19	1	398	1	HES4	1	934923	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		934923	248315698	1	43059											
AGRN	375790	broad.mit.edu	37	1	978746	978746	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	978746	C	T	978746	2	4	703	1	0	0	0	0	0	0	0	1	397	767	27	1		1	AGRN	1	978746	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	43823	978746	248271875	2	43060											
AGRN	375790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	985016	985016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	985016	C	T	985016	3	4	703	1	0	0	0	0	1	0	0	0	397	768	27	1	4687	1	AGRN	1	985016	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6270	985016	248265605	3	43061											
ACAP3	116983	mdanderson.org	37	1	1229953	1229953	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	1229953	C	T	1229953	2	4	703	1	0	0	0	0	0	0	0	1	120	680	24	2		2	ACAP3	1	1229953	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	244937	1229953	248020668	4	43062											
GABRD	2563	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	1956478	1956478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	1956478	C	T	1956478	3	4	703	1	0	0	0	0	1	0	0	0	6176	643	23	1	172	1	GABRD	1	1956478	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	726525	1956478	247294143	5	43063											
TP73	7161	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	3599709	3599709	+	Missense_Mutation	SNP	G	G	A	rs146218192		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	3599709	G	A	3599709	3	1	703	1	0	0	0	0	1	0	0	0	16405	1145	40	1	157	1	TP73	1	3599709	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1643231	3599709	245650912	6	43064											
C1orf174	339448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	3807424	3807424	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	3807424	G	A	3807424	2	1	703	1	0	0	0	0	0	0	0	1	2017	1074	38	1		1	C1orf174	1	3807424	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	207715	3807424	245443197	7	43065											
NPHP4	261734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	5951002	5951002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	5951002	C	T	5951002	3	4	703	1	0	0	0	0	1	0	0	0	10588	536	19	1	2106	1	NPHP4	1	5951002	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2143578	5951002	243299619	8	43066											
ZBTB48	3104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	6646763	6646763	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	6646763	G	A	6646763	2	1	703	1	0	0	0	0	0	0	0	1	17561	1132	40	1		1	ZBTB48	1	6646763	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	695761	6646763	242603858	9	43067											
SLC45A1	50651	broad.mit.edu	37	1	8385423	8385423	+	Missense_Mutation	SNP	C	C	T	rs200531790		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	8385423	C	T	8385423	3	4	703	1	0	0	0	0	1	0	0	0	14653	536	19	1	469	1	SLC45A1	1	8385423	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1738660	8385423	240865198	10	43068											
RERE	473	mdanderson.org	37	1	8421203	8421203	+	Silent	SNP	T	T	C	rs13596	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	8421203	T	C	8421203	2	2	703	1	0	0	0	0	0	0	0	1	13244	1683	59	3		3	RERE	1	8421203	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	35780	8421203	240829418	11	43069											
UBE4B	10277	broad.mit.edu;bcgsc.ca	37	1	10155570	10155570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	10155570	C	T	10155570	3	4	703	1	0	0	0	0	1	0	0	0	16895	893	31	1	273	1	UBE4B	1	10155570	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1734367	10155570	239095051	12	43070											
CORT	1325	hgsc.bcm.edu;ucsc.edu	37	1	10510334	10510334	+	Silent	SNP	C	C	T	rs182159138	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	10510334	C	T	10510334	2	4	703	1	0	0	0	0	0	0	0	1	3762	639	23	1		1	CORT	1	10510334	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	354764	10510334	238740287	13	43071											
CASZ1	54897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	10713846	10713846	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	10713846	G	A	10713846	2	1	703	1	0	0	0	0	0	0	0	1	2687	1103	39	1		1	CASZ1	1	10713846	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	203512	10713846	238536775	14	43072											
PRDM2	7799	broad.mit.edu;mdanderson.org	37	1	14107224	14107224	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	14107224	G	A	14107224	2	1	703	1	0	0	0	0	0	0	0	1	12468	1103	39	1		1	PRDM2	1	14107224	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3393378	14107224	235143397	15	43073											
PLEKHM2	23207	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	16053893	16053893	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	16053893	C	T	16053893	2	4	703	1	0	0	0	0	0	0	0	1	12088	639	23	1		1	PLEKHM2	1	16053893	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1946669	16053893	233196728	16	43074											
CROCC	9696	mdanderson.org	37	1	17270751	17270751	+	Silent	SNP	G	G	A	rs12025984	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	17270751	G	A	17270751	2	1	703	1	0	0	0	0	0	0	0	1	3895	1074	38	1		1	CROCC	1	17270751	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1216858	17270751	231979870	17	43075											
PADI4	23569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	17664602	17664602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	17664602	G	A	17664602	3	1	703	1	0	0	0	0	1	0	0	0	11387	1059	37	1	496	1	PADI4	1	17664602	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	393851	17664602	231586019	18	43076											
HTR6	3362	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	20005813	20005813	+	Silent	SNP	C	C	T	rs201218739		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	20005813	C	T	20005813	2	4	703	1	0	0	0	0	0	0	0	1	7458	639	23	1		1	HTR6	1	20005813	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2341211	20005813	229244808	19	43077											
TMCO4	255104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	20067419	20067419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	20067419	G	A	20067419	3	1	703	1	0	0	0	0	1	0	0	0	16010	1116	39	1	1035	1	TMCO4	1	20067419	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	61606	20067419	229183202	20	43078											
ALPL	249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	21887145	21887145	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	21887145	C	T	21887145	4	4	703	1	0	0	0	0	0	1	0	0	547	760	27	1	94	1	ALPL	1	21887145	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1819726	21887145	227363476	21	43079											
EPHA8	2046	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	1	22902937	22902937	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	22902937	G	A	22902937	2	1	703	1	0	0	0	0	0	0	0	1	5175	1103	39	1		1	EPHA8	1	22902937	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1015792	22902937	226347684	22	43080											
SEPN1	57190	broad.mit.edu;bcgsc.ca	37	1	26140634	26140634	+	Missense_Mutation	SNP	G	G	A	rs138259627		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	26140634	G	A	26140634	3	1	703	1	0	0	0	0	1	0	0	0	14069	1145	40	1	1613	1	SEPN1	1	26140634	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3237697	26140634	223109987	23	43081											
SERINC2	347735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	31899552	31899552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	31899552	C	T	31899552	3	4	703	1	0	0	0	0	1	0	0	0	14093	768	27	1	684	1	SERINC2	1	31899552	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5758918	31899552	217351069	24	43082											
BAI2	576	broad.mit.edu	37	1	32222290	32222290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	32222290	C	T	32222290	3	4	703	1	0	0	0	0	1	0	0	0	1299	652	23	1	4729	1	BAI2	1	32222290	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	322738	32222290	217028331	25	43083											
CCDC28B	79140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	32667610	32667610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	32667610	G	A	32667610	3	1	703	1	0	0	0	0	1	0	0	0	2805	1116	39	1	76	1	CCDC28B	1	32667610	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	445320	32667610	216583011	26	43084											
AK2	204	mdanderson.org	37	1	33478959	33478959	+	Missense_Mutation	SNP	C	C	G	rs72884305		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	33478959	C	G	33478959	3	3	703	1	0	0	0	0	1	0	0	0	440	680	24	4	189	4	AK2	1	33478959	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	811349	33478959	215771662	27	43085											
NCDN	23154	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	1	36028957	36028957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	36028957	G	A	36028957	3	1	703	1	0	0	0	0	1	0	0	0	10221	1145	40	1	1558	1	NCDN	1	36028957	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2549998	36028957	213221664	28	43086											
EPHA10	284656	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	38227629	38227629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	38227629	G	A	38227629	3	1	703	1	0	0	0	0	1	0	0	0	5168	1087	38	1	2826	1	EPHA10	1	38227629	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2198672	38227629	211022992	29	43087											
INPP5B	3633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	38345781	38345781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	38345781	G	A	38345781	3	1	703	1	0	0	0	0	1	0	0	0	7762	1145	40	1	1264	1	INPP5B	1	38345781	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	118152	38345781	210904840	30	43088											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	39951259	39951259	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	39951259	C	T	39951259	2	4	703	1	0	0	0	0	0	0	0	1	9151	639	23	1		1	MACF1	1	39951259	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1605478	39951259	209299362	31	43089											
NT5C1A	84618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	40125029	40125029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	40125029	G	A	40125029	3	1	703	1	0	0	0	0	1	0	0	0	10692	1115	39	1	239	1	NT5C1A	1	40125029	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	173770	40125029	209125592	32	43090											
HIVEP3	59269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	42047504	42047504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42047504	G	A	42047504	3	1	703	1	0	0	0	0	1	0	0	0	7195	1086	38	1	4279	1	HIVEP3	1	42047504	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1922475	42047504	207203117	33	43091											
GUCA2B	2981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	42620453	42620453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42620453	G	A	42620453	3	1	703	1	0	0	0	0	1	0	0	0	6899	1087	38	1	199	1	GUCA2B	1	42620453	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	572949	42620453	206630168	34	43092											
ST3GAL3	6487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	44303969	44303969	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	44303969	G	A	44303969	2	1	703	1	0	0	0	0	0	0	0	1	15228	1103	39	1		1	ST3GAL3	1	44303969	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1683516	44303969	204946652	35	43093											
MAST2	23139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	46493480	46493480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	46493480	C	T	46493480	3	4	703	1	0	0	0	0	1	0	0	0	9332	536	19	1	2063	1	MAST2	1	46493480	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2189511	46493480	202757141	36	43094											
BEND5	79656	broad.mit.edu	37	1	49208391	49208391	+	Silent	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49208391	C	A	49208391	2	1	703	1	0	0	0	0	0	0	0	1	1401	639	23	4		4	BEND5	1	49208391	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2714911	49208391	200042230	37	43095											
SLC1A7	6512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	53580601	53580601	+	Missense_Mutation	SNP	C	C	T	rs139757854	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	53580601	C	T	53580601	3	4	703	1	0	0	0	0	1	0	0	0	14450	768	27	1	1458	1	SLC1A7	1	53580601	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4372210	53580601	195670020	38	43096											
C1orf168	199920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	57185885	57185885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	57185885	C	T	57185885	3	4	703	1	0	0	0	0	1	0	0	0	2014	893	31	1	106	1	C1orf168	1	57185885	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3605284	57185885	192064736	39	43097											
NFIA	4774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	61818215	61818215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	61818215	C	T	61818215	3	4	703	1	0	0	0	0	1	0	0	0	10377	913	32	2	958	2	NFIA	1	61818215	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4632330	61818215	187432406	40	43098											
KANK4	163782	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	62739646	62739646	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	62739646	A	T	62739646	3	4	703	1	0	0	0	0	1	0	0	0	7986	333	12	5	1889	5	KANK4	1	62739646	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	921431	62739646	186510975	41	43099											
DOCK7	85440	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	62979274	62979274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	62979274	T	C	62979274	3	2	703	1	0	0	0	0	1	0	0	0	4694	1792	62	3	2371	3	DOCK7	1	62979274	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	239628	62979274	186271347	42	43100											
CACHD1	57685	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	65146953	65146953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	65146953	G	A	65146953	3	1	703	1	0	0	0	0	1	0	0	0	2539	1145	40	1	3364	1	CACHD1	1	65146953	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2167679	65146953	184103668	43	43101											
FUBP1	8880	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	78428480	78428480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	78428480	C	T	78428480	3	4	703	1	0	0	0	0	1	0	0	0	6099	652	23	1	643	1	FUBP1	1	78428480	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	13281527	78428480	170822141	44	43102											
SH3GLB1	51100	mdanderson.org	37	1	87181510	87181510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	87181510	T	C	87181510	3	2	703	1	0	0	0	0	1	0	0	0	14266	1406	49	3	182	3	SH3GLB1	1	87181510	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	8753030	87181510	162069111	45	43103											
HFM1	164045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	91809065	91809065	+	Silent	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	91809065	A	G	91809065	2	3	703	1	0	0	0	0	0	0	0	1	7090	98	4	3		3	HFM1	1	91809065	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	4627555	91809065	157441556	46	43104											
VCAM1	7412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	101186203	101186203	+	Missense_Mutation	SNP	C	C	T	rs142501320		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	101186203	C	T	101186203	3	4	703	1	0	0	0	0	1	0	0	0	17149	536	19	1	242	1	VCAM1	1	101186203	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9377138	101186203	148064418	47	43105											
KIAA1324	57535	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	109735386	109735386	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	109735386	C	T	109735386	4	4	703	1	0	0	0	0	0	1	0	0	8230	644	23	1	1891	1	KIAA1324	1	109735386	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8549183	109735386	139515235	48	43106											
GSTM2	2946	broad.mit.edu	37	1	110211966	110211966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	110211966	C	T	110211966	3	4	703	1	0	0	0	0	1	0	0	0	6845	759	27	1	246	1	GSTM2	1	110211966	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	476580	110211966	139038655	49	43107											
SLC6A17	388662	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	110709687	110709687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	110709687	G	A	110709687	3	1	703	1	0	0	0	0	1	0	0	0	14693	1116	39	1	138	1	SLC6A17	1	110709687	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	497721	110709687	138540934	50	43108											
IGSF3	3321	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	117150686	117150686	+	Missense_Mutation	SNP	C	C	T	rs202203327	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	117150686	C	T	117150686	3	4	703	1	0	0	0	0	1	0	0	0	7608	768	27	1	2576	1	IGSF3	1	117150686	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6440999	117150686	132099935	51	43109											
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	144879218	144879218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	144879218	C	T	144879218	3	4	703	1	0	0	0	0	1	0	0	0	11650	565	20	2	2880	2	PDE4DIP	1	144879218	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	27728532	144879218	104371403	52	43110											
NBPF10	100132406	mdanderson.org	37	1	145299824	145299824	+	Missense_Mutation	SNP	C	C	G	rs9424711		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	145299824	C	G	145299824	3	3	703	1	0	0	0	0	1	0	0	0	10200	816	29	4	895	4	NBPF10	1	145299824	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	420606	145299824	103950797	53	43111											
C1orf51	148523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	150259023	150259023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	150259023	G	A	150259023	3	1	703	1	0	0	0	0	1	0	0	0	2045	971	34	2	833	2	C1orf51	1	150259023	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4959199	150259023	98991598	54	43112											
RPRD2	23248	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	150445515	150445515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	150445515	G	A	150445515	3	1	703	1	0	0	0	0	1	0	0	0	13630	1145	40	1	4133	1	RPRD2	1	150445515	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	186492	150445515	98805106	55	43113											
HORMAD1	84072	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	150679259	150679259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	150679259	C	T	150679259	3	4	703	1	0	0	0	0	1	0	0	0	7293	652	23	1	634	1	HORMAD1	1	150679259	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	233744	150679259	98571362	56	43114											
SELENBP1	8991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	151339349	151339349	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	151339349	G	A	151339349	2	1	703	1	0	0	0	0	0	0	0	1	14027	1049	37	1		1	SELENBP1	1	151339349	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	660090	151339349	97911272	57	43115											
POGZ	23126	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	151377515	151377515	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	151377515	G	A	151377515	2	1	703	1	0	0	0	0	0	0	0	1	12193	1103	39	1		1	POGZ	1	151377515	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	38166	151377515	97873106	58	43116											
SNX27	81609	broad.mit.edu	37	1	151641045	151641045	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	151641045	T	C	151641045	2	2	703	1	0	0	0	0	0	0	0	1	14910	1828	64	3		3	SNX27	1	151641045	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	263530	151641045	97609576	59	43117											
S100A4	6275	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	153516294	153516294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	153516294	C	T	153516294	3	4	703	1	0	0	0	0	1	0	0	0	13793	768	27	1	62	1	S100A4	1	153516294	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1875249	153516294	95734327	60	43118											
UBAP2L	9898	broad.mit.edu	37	1	154209571	154209571	+	Missense_Mutation	SNP	C	C	T	rs147740832		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	154209571	C	T	154209571	3	4	703	1	0	0	0	0	1	0	0	0	16850	536	19	1	688	1	UBAP2L	1	154209571	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	693277	154209571	95041050	61	43119											
YY1AP1	55249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	155629537	155629537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	155629537	A	G	155629537	3	3	703	1	0	0	0	0	1	0	0	0	17520	275	10	3	92	3	YY1AP1	1	155629537	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1419966	155629537	93621084	62	43120											
ARHGEF2	9181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	155921539	155921539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	155921539	G	A	155921539	3	1	703	1	0	0	0	0	1	0	0	0	903	1116	39	1	779	1	ARHGEF2	1	155921539	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	292002	155921539	93329082	63	43121											
MRPL24	79590	hgsc.bcm.edu;bcgsc.ca	37	1	156708172	156708172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	156708172	C	T	156708172	3	4	703	1	0	0	0	0	1	0	0	0	9797	652	23	1	424	1	MRPL24	1	156708172	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	786633	156708172	92542449	64	43122											
SH2D2A	9047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	156785800	156785800	+	Missense_Mutation	SNP	C	C	T	rs146718843	byfrequency;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	156785800	C	T	156785800	3	4	703	1	0	0	0	0	1	0	0	0	14245	710	25	2	1106	2	SH2D2A	1	156785800	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	77628	156785800	92464821	65	43123											
INSRR	3645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	156814312	156814312	+	Silent	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	156814312	G	T	156814312	2	4	703	1	0	0	0	0	0	0	0	1	7781	987	35	4		4	INSRR	1	156814312	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	28512	156814312	92436309	66	43124											
IGSF9	57549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	159898623	159898623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	159898623	C	T	159898623	3	4	703	1	0	0	0	0	1	0	0	0	7612	768	27	1	996	1	IGSF9	1	159898623	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3084311	159898623	89351998	67	43125											
PPOX	5498	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	161139815	161139815	+	Splice_Site	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	161139815	G	T	161139815	5	4	703	1	0	0	0	0	0	0	1	0	12358	1275	44	4	1018	4	PPOX	1	161139815	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1241192	161139815	88110806	68	43126											
DDR2	4921	hgsc.bcm.edu	37	1	162724541	162724541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	162724541	C	T	162724541	3	4	703	1	0	0	0	0	1	0	0	0	4339	768	27	1	323	1	DDR2	1	162724541	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1584726	162724541	86526080	69	43127											
DUSP27	92235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	167088687	167088687	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	167088687	G	A	167088687	2	1	703	1	0	0	0	0	0	0	0	1	4826	1074	38	1		1	DUSP27	1	167088687	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4364146	167088687	82161934	70	43128											
TBX19	9095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	168282043	168282043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	168282043	G	A	168282043	3	1	703	1	0	0	0	0	1	0	0	0	15666	1117	39	1	1180	1	TBX19	1	168282043	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1193356	168282043	80968578	71	43129											
C1orf114	57821	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	169391220	169391220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	169391220	C	T	169391220	3	4	703	1	0	0	0	0	1	0	0	0	1989	884	31	1	1093	1	C1orf114	1	169391220	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1109177	169391220	79859401	72	43130											
TOR3A	64222	ucsc.edu;mdanderson.org	37	1	179057117	179057117	+	Silent	SNP	G	G	A	rs12092348	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	179057117	G	A	179057117	2	1	703	1	0	0	0	0	0	0	0	1	16388	1103	39	1		1	TOR3A	1	179057117	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9665897	179057117	70193504	73	43131											
QSOX1	5768	broad.mit.edu;hgsc.bcm.edu	37	1	180135639	180135639	+	Silent	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	180135639	C	A	180135639	2	1	703	1	0	0	0	0	0	0	0	1	12896	610	22	4		4	QSOX1	1	180135639	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1078522	180135639	69114982	74	43132											
TPR	7175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	186289518	186289518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	186289518	C	T	186289518	3	4	703	1	0	0	0	0	1	0	0	0	16428	652	23	1	621	1	TPR	1	186289518	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6153879	186289518	62961103	75	43133											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	201029943	201029943	+	Missense_Mutation	SNP	C	C	T	rs1800559	bycluster	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	201029943	C	T	201029943	3	4	703	1	0	0	0	0	1	0	0	0	2549	782	27	1	2440	1	CACNA1S	1	201029943	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	14740425	201029943	48220678	76	43134											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	1	201060823	201060823	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	201060823	G	A	201060823	2	1	703	1	0	0	0	0	0	0	0	1	2549	1048	37	1		1	CACNA1S	1	201060823	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	30880	201060823	48189798	77	43135											
CNTN2	6900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	205041226	205041226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	205041226	C	T	205041226	3	4	703	1	0	0	0	0	1	0	0	0	3643	739	26	2	2770	2	CNTN2	1	205041226	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3980403	205041226	44209395	78	43136											
PLXNA2	5362	broad.mit.edu;bcgsc.ca	37	1	208383788	208383788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	208383788	T	C	208383788	3	2	703	1	0	0	0	0	1	0	0	0	12127	1725	60	3	4596	3	PLXNA2	1	208383788	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3342562	208383788	40866833	79	43137											
CDC42BPA	8476	ucsc.edu;bcgsc.ca	37	1	227504801	227504801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	227504801	A	G	227504801	3	3	703	1	0	0	0	0	1	0	0	0	3074	159	6	3	5220	3	CDC42BPA	1	227504801	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	19121013	227504801	21745820	80	43138											
JMJD4	65094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	227921193	227921193	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	227921193	G	A	227921193	2	1	703	1	0	0	0	0	0	0	0	1	7958	1190	42	2		2	JMJD4	1	227921193	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	416392	227921193	21329428	81	43139											
TARBP1	6894	broad.mit.edu	37	1	234527364	234527364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	234527364	T	C	234527364	3	2	703	1	0	0	0	0	1	0	0	0	15567	1696	59	3	44	3	TARBP1	1	234527364	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	6606171	234527364	14723257	82	43140											
HEATR1	55127	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	236762781	236762781	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	236762781	A	G	236762781	5	3	703	1	0	0	0	0	0	0	1	0	7034	405	14	3	6099	3	HEATR1	1	236762781	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2235417	236762781	12487840	83	43141											
NLRP3	114548	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	247587215	247587215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	247587215	G	A	247587215	3	1	703	1	0	0	0	0	1	0	0	0	10485	1145	40	1	480	1	NLRP3	1	247587215	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10824434	247587215	1663406	84	43142											
TRIM58	25893	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	248031300	248031300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	248031300	T	C	248031300	3	2	703	1	0	0	0	0	1	0	0	0	16543	1435	50	3	824	3	TRIM58	1	248031300	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	444085	248031300	1219321	85	43143											
OR2M3	127062	broad.mit.edu;bcgsc.ca	37	1	248366613	248366613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	248366613	G	A	248366613	3	1	703	1	0	0	0	0	1	0	0	0	11018	1203	42	2	246	2	OR2M3	1	248366613	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	335313	248366613	884008	86	43144											
PGBD2	267002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	249211775	249211775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	249211775	T	C	249211775	3	2	703	1	0	0	0	0	1	0	0	0	11788	1638	57	3	998	3	PGBD2	1	249211775	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	845162	249211775	38846	87	43145											
MYT1L	23040	hgsc.bcm.edu;mdanderson.org	37	2	1896005	1896005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1896005	G	A	1896005	3	1	703	1	0	0	0	0	1	0	0	0	10114	1087	38	1	1517	1	MYT1L	2	1896005	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		1896005	241303368	88	43146											
NT5C1B	93034	ucsc.edu;mdanderson.org	37	2	18745215	18745215	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	18745215	G	A	18745215	2	1	703	1	0	0	0	0	0	0	0	1	10693	1136	40	1		1	NT5C1B	2	18745215	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	16849210	18745215	224454158	89	43147											
GDF7	151449	broad.mit.edu	37	2	20871061	20871061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	20871061	C	T	20871061	3	4	703	1	0	0	0	0	1	0	0	0	6325	768	27	1	1235	1	GDF7	2	20871061	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2125846	20871061	222328312	90	43148											
DTNB	1838	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	25799755	25799755	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	25799755	G	A	25799755	2	1	703	1	0	0	0	0	0	0	0	1	4791	1103	39	1		1	DTNB	2	25799755	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4928694	25799755	217399618	91	43149											
C2orf16	84226	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	27802448	27802448	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	27802448	G	A	27802448	2	1	703	1	0	0	0	0	0	0	0	1	2159	1132	40	1		1	C2orf16	2	27802448	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2002693	27802448	215396925	92	43150											
EHD3	30845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	31484520	31484520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	31484520	C	T	31484520	3	4	703	1	0	0	0	0	1	0	0	0	4981	643	23	1	1039	1	EHD3	2	31484520	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3682072	31484520	211714853	93	43151											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	32713733	32713733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	32713733	A	G	32713733	3	3	703	1	0	0	0	0	1	0	0	0	1438	217	8	3	8213	3	BIRC6	2	32713733	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1229213	32713733	210485640	94	43152											
CRIM1	51232	broad.mit.edu	37	2	36691711	36691711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	36691711	G	A	36691711	3	1	703	1	0	0	0	0	1	0	0	0	3875	1145	40	1	922	1	CRIM1	2	36691711	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3977978	36691711	206507662	95	43153											
KCNG3	170850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	42720408	42720408	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42720408	G	A	42720408	2	1	703	1	0	0	0	0	0	0	0	1	8036	1074	38	1		1	KCNG3	2	42720408	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6028697	42720408	200478965	96	43154											
OXER1	165140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	42990143	42990143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42990143	G	A	42990143	3	1	703	1	0	0	0	0	1	0	0	0	11338	1087	38	1	98	1	OXER1	2	42990143	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	269735	42990143	200209230	97	43155											
OXER1	165140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	42990181	42990181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	42990181	A	G	42990181	3	3	703	1	0	0	0	0	1	0	0	0	11338	159	6	3	136	3	OXER1	2	42990181	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	38	42990181	200209192	98	43156											
PPM1B	5495	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	44428691	44428691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	44428691	G	A	44428691	3	1	703	1	0	0	0	0	1	0	0	0	12346	1145	40	1	355	1	PPM1B	2	44428691	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1438510	44428691	198770682	99	43157											
MSH6	2956	bcgsc.ca	37	2	48030692	48030693	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	48030693	-	T	48030692	7	5	703	1	0	1	1	0	0	0	0	0	9881	1596	56	0	3324	0	MSH6	2	48030692	Frame_Shift_Ins	INS	-	TCGA-KN-8428-01A-11D-2310-10	3602001	48030692	195168681	100	43158											
SPTBN1	6711	broad.mit.edu	37	2	54876812	54876812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	54876812	G	A	54876812	3	1	703	1	0	0	0	0	1	0	0	0	15131	1145	40	1	5474	1	SPTBN1	2	54876812	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6846120	54876812	188322561	101	43159											
RTN4	57142	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	55254295	55254295	+	Missense_Mutation	SNP	C	C	T	rs144622313	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	55254295	C	T	55254295	3	4	703	1	0	0	0	0	1	0	0	0	13741	536	19	1	2704	1	RTN4	2	55254295	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	377483	55254295	187945078	102	43160											
C2orf63	130162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	55408743	55408743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	55408743	G	A	55408743	3	1	703	1	0	0	0	0	1	0	0	0	2184	1144	40	1	632	1	C2orf63	2	55408743	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	154448	55408743	187790630	103	43161											
ETAA1	54465	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	67637129	67637129	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	67637129	C	T	67637129	4	4	703	1	0	0	0	0	0	1	0	0	5269	528	19	1	2762	1	ETAA1	2	67637129	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12228386	67637129	175562244	104	43162											
GFPT1	2673	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	69583647	69583647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	69583647	C	T	69583647	3	4	703	1	0	0	0	0	1	0	0	0	6352	652	23	1	1511	1	GFPT1	2	69583647	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1946518	69583647	173615726	105	43163											
DYSF	8291	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	71887760	71887760	+	Missense_Mutation	SNP	C	C	T	rs144383140		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	71887760	C	T	71887760	3	4	703	1	0	0	0	0	1	0	0	0	4861	536	19	1	5298	1	DYSF	2	71887760	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2304113	71887760	171311613	106	43164											
EGR4	1961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	73520376	73520376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	73520376	C	T	73520376	3	4	703	1	0	0	0	0	1	0	0	0	4976	893	31	1	1398	1	EGR4	2	73520376	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1632616	73520376	169678997	107	43165											
TET3	200424	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	74327959	74327959	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	74327959	C	T	74327959	2	4	703	1	0	0	0	0	0	0	0	1	15783	535	19	1		1	TET3	2	74327959	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	807583	74327959	168871414	108	43166											
TCF7L1	83439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	85533623	85533623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	85533623	C	T	85533623	3	4	703	1	0	0	0	0	1	0	0	0	15709	643	23	1	1236	1	TCF7L1	2	85533623	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11205664	85533623	157665750	109	43167											
POLR1A	25885	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	86315989	86315989	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	86315989	T	G	86315989	3	3	703	1	0	0	0	0	1	0	0	0	12216	1609	56	5	4737	5	POLR1A	2	86315989	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	782366	86315989	156883384	110	43168											
FAM178B	51252	bcgsc.ca	37	2	97568436	97568436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	97568436	C	T	97568436	3	4	703	1	0	0	0	0	1	0	0	0	5508	884	31	1	519	1	FAM178B	2	97568436	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11252447	97568436	145630937	111	43169											
LYG2	254773	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	99860551	99860551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	99860551	T	C	99860551	3	2	703	1	0	0	0	0	1	0	0	0	9112	1696	59	3	215	3	LYG2	2	99860551	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	2292115	99860551	143338822	112	43170											
AFF3	3899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	100210166	100210166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	100210166	G	A	100210166	3	1	703	1	0	0	0	0	1	0	0	0	358	1086	38	1	1767	1	AFF3	2	100210166	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	349615	100210166	142989207	113	43171											
IL1R1	3554	broad.mit.edu;mdanderson.org;bcgsc.ca	37	2	102789203	102789203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	102789203	C	T	102789203	3	4	703	1	0	0	0	0	1	0	0	0	7665	893	31	1	922	1	IL1R1	2	102789203	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2579037	102789203	140410170	114	43172											
MALL	7851	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	110849317	110849317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	110849317	C	A	110849317	3	1	703	1	0	0	0	0	1	0	0	0	9208	797	28	4	337	4	MALL	2	110849317	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8060114	110849317	132350056	115	43173											
BUB1	699	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	111416221	111416221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	111416221	A	G	111416221	3	3	703	1	0	0	0	0	1	0	0	0	1572	333	12	3	1938	3	BUB1	2	111416221	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	566904	111416221	131783152	116	43174											
TMEM177	80775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	120438454	120438454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	120438454	G	A	120438454	3	1	703	1	0	0	0	0	1	0	0	0	16106	1087	38	1	27	1	TMEM177	2	120438454	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9022233	120438454	122760919	117	43175											
BIN1	274	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	127810999	127810999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	127810999	T	C	127810999	3	2	703	1	0	0	0	0	1	0	0	0	1432	1565	54	3	543	3	BIN1	2	127810999	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	7372545	127810999	115388374	118	43176											
MYO7B	4648	broad.mit.edu;bcgsc.ca	37	2	128324245	128324245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	128324245	G	A	128324245	3	1	703	1	0	0	0	0	1	0	0	0	10090	1145	40	1	327	1	MYO7B	2	128324245	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	513246	128324245	114875128	119	43177											
RAB3GAP1	22930	ucsc.edu	37	2	135920123	135920123	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	135920123	A	G	135920123	5	3	703	1	0	0	0	0	0	0	1	0	12948	202	7	3	2366	3	RAB3GAP1	2	135920123	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	7595878	135920123	107279250	120	43178											
LCT	3938	broad.mit.edu;bcgsc.ca	37	2	136547323	136547323	+	Missense_Mutation	SNP	G	G	A	rs183725992		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	136547323	G	A	136547323	3	1	703	1	0	0	0	0	1	0	0	0	8700	1087	38	1	410	1	LCT	2	136547323	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	627200	136547323	106652050	121	43179											
COBLL1	22837	broad.mit.edu;hgsc.bcm.edu	37	2	165578972	165578972	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	165578972	A	-	165578972	7	5	703	1	0	1	0	1	0	0	0	0	3656	246	9	0	2818	0	COBLL1	2	165578972	Frame_Shift_Del	DEL	A	TCGA-KN-8428-01A-11D-2310-10	29031649	165578972	77620401	122	43180	597	2									
COBLL1	22837	bcgsc.ca	37	2	165578973	165578973	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	165578973	A	-	165578973	7	5	703	1	0	1	0	1	0	0	0	0	3656	14	1	0	2819	0	COBLL1	2	165578973	Frame_Shift_Del	DEL	A	TCGA-KN-8428-01A-11D-2310-10	1	165578973	77620400	123	43181	597	2									
XIRP2	129446	broad.mit.edu	37	2	168100185	168100185	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	168100185	C	T	168100185	2	4	703	1	0	0	0	0	0	0	0	1	17442	535	19	1		1	XIRP2	2	168100185	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2521212	168100185	75099188	124	43182											
METTL8	79828	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	172182369	172182369	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	172182369	C	G	172182369	3	3	703	1	0	0	0	0	1	0	0	0	9514	797	28	4	216	4	METTL8	2	172182369	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4082184	172182369	71017004	125	43183											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179460285	179460285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	179460285	T	C	179460285	3	2	703	1	0	0	0	0	1	0	0	0	16747	1464	51	3	50455	3	TTN	2	179460285	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	7277916	179460285	63739088	126	43184											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	179578856	179578856	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	179578856	C	T	179578856	2	4	703	1	0	0	0	0	0	0	0	1	16747	639	23	1		1	TTN	2	179578856	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	118571	179578856	63620517	127	43185											
STAT1	6772	ucsc.edu;bcgsc.ca	37	2	191848415	191848415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	191848415	C	T	191848415	3	4	703	1	0	0	0	0	1	0	0	0	15276	652	23	1	893	1	STAT1	2	191848415	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12269559	191848415	51350958	128	43186											
HSPD1	3329	broad.mit.edu;bcgsc.ca	37	2	198353083	198353083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	198353083	C	T	198353083	3	4	703	1	0	0	0	0	1	0	0	0	7435	797	28	2	385	2	HSPD1	2	198353083	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6504668	198353083	44846290	129	43187											
NBEAL1	65065	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	204002940	204002940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	204002940	A	G	204002940	3	3	703	1	0	0	0	0	1	0	0	0	10195	362	13	3	4644	3	NBEAL1	2	204002940	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5649857	204002940	39196433	130	43188											
PIKFYVE	200576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	209214769	209214769	+	Missense_Mutation	SNP	C	C	T	rs147015179	bycluster;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	209214769	C	T	209214769	3	4	703	1	0	0	0	0	1	0	0	0	11931	478	17	2	5545	2	PIKFYVE	2	209214769	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5211829	209214769	33984604	131	43189											
OBSL1	23363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	220435086	220435086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	220435086	C	T	220435086	3	4	703	1	0	0	0	0	1	0	0	0	10820	768	27	1	5057	1	OBSL1	2	220435086	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11220317	220435086	22764287	132	43190											
DOCK10	55619	broad.mit.edu	37	2	225684245	225684245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	225684245	C	T	225684245	3	4	703	1	0	0	0	0	1	0	0	0	4687	782	27	1	3487	1	DOCK10	2	225684245	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5249159	225684245	17515128	133	43191											
PID1	55022	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	230127481	230127481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	230127481	G	A	230127481	3	1	703	1	0	0	0	0	1	0	0	0	11889	1059	37	1	717	1	PID1	2	230127481	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4443236	230127481	13071892	134	43192											
C2orf57	165100	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	232458786	232458786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	232458786	C	T	232458786	3	4	703	1	0	0	0	0	1	0	0	0	2180	739	26	2	1126	2	C2orf57	2	232458786	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2331305	232458786	10740587	135	43193											
ILKAP	80895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	239079272	239079272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	239079272	G	A	239079272	3	1	703	1	0	0	0	0	1	0	0	0	7721	1116	39	1	98	1	ILKAP	2	239079272	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6620486	239079272	4120101	136	43194											
TRNT1	51095	broad.mit.edu	37	3	3179092	3179092	+	Silent	SNP	G	G	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	3179092	G	C	3179092	2	2	703	1	0	0	0	0	0	0	0	1	16585	1161	41	4		4	TRNT1	3	3179092	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10		3179092	194843338	137	43195											
CIDEC	63924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	9918797	9918797	+	Missense_Mutation	SNP	C	C	T	rs148744468		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	9918797	C	T	9918797	3	4	703	1	0	0	0	0	1	0	0	0	3429	536	19	1	572	1	CIDEC	3	9918797	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6739705	9918797	188103633	138	43196											
SLC6A11	6538	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	10960101	10960101	+	Silent	SNP	C	C	T	rs144421280		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	10960101	C	T	10960101	2	4	703	1	0	0	0	0	0	0	0	1	14687	547	19	1		1	SLC6A11	3	10960101	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1041304	10960101	187062329	139	43197											
CAND2	23066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	12858741	12858741	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	12858741	G	A	12858741	2	1	703	1	0	0	0	0	0	0	0	1	2618	1132	40	1		1	CAND2	3	12858741	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1898640	12858741	185163689	140	43198											
C3orf20	84077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	14724594	14724594	+	Missense_Mutation	SNP	G	G	A	rs145497672		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	14724594	G	A	14724594	3	1	703	1	0	0	0	0	1	0	0	0	2215	1145	40	1	376	1	C3orf20	3	14724594	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1865853	14724594	183297836	141	43199											
EFHB	151651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	19921161	19921161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	19921161	G	A	19921161	3	1	703	1	0	0	0	0	1	0	0	0	4947	1144	40	1	41	1	EFHB	3	19921161	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5196567	19921161	178101269	142	43200											
GADL1	339896	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	30769804	30769804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	30769804	C	T	30769804	3	4	703	1	0	0	0	0	1	0	0	0	6192	797	28	2	73	2	GADL1	3	30769804	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	10848643	30769804	167252626	143	43201											
STT3B	201595	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	31617961	31617961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	31617961	G	A	31617961	3	1	703	1	0	0	0	0	1	0	0	0	15346	971	34	2	394	2	STT3B	3	31617961	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	848157	31617961	166404469	144	43202											
DCLK3	85443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	36759593	36759593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	36759593	C	T	36759593	3	4	703	1	0	0	0	0	1	0	0	0	4295	768	27	1	293	1	DCLK3	3	36759593	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5141632	36759593	161262837	145	43203											
SLC22A13	9390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	38316965	38316965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	38316965	C	T	38316965	3	4	703	1	0	0	0	0	1	0	0	0	14457	652	23	1	929	1	SLC22A13	3	38316965	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1557372	38316965	159705465	146	43204											
ZNF621	285268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	40573994	40573994	+	Missense_Mutation	SNP	C	C	T	rs144763141		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	40573994	C	T	40573994	3	4	703	1	0	0	0	0	1	0	0	0	18057	652	23	1	747	1	ZNF621	3	40573994	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2257029	40573994	157448436	147	43205											
CTNNB1	1499	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	41266964	41266964	+	Missense_Mutation	SNP	G	G	A	rs200890083		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	41266964	G	A	41266964	3	1	703	1	0	0	0	0	1	0	0	0	4018	1145	40	1	649	1	CTNNB1	3	41266964	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	692970	41266964	156755466	148	43206											
ZNF197	10168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	44684294	44684294	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	44684294	C	T	44684294	4	4	703	1	0	0	0	0	0	1	0	0	17771	760	27	1	1690	1	ZNF197	3	44684294	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3417330	44684294	153338136	149	43207											
PLXNB1	5364	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	48462160	48462160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	48462160	G	A	48462160	3	1	703	1	0	0	0	0	1	0	0	0	12130	1116	39	1	4581	1	PLXNB1	3	48462160	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3777866	48462160	149560270	150	43208											
COL7A1	1294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	48626075	48626075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	48626075	G	A	48626075	3	1	703	1	0	0	0	0	1	0	0	0	3706	1101	38	1	6647	1	COL7A1	3	48626075	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	163915	48626075	149396355	151	43209											
NDUFAF3	25915	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	3	49059935	49059935	+	Silent	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49059935	C	A	49059935	2	1	703	1	0	0	0	0	0	0	0	1	10283	668	24	4		4	NDUFAF3	3	49059935	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	433860	49059935	148962495	152	43210											
IMPDH2	3615	broad.mit.edu	37	3	49061970	49061970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49061970	G	A	49061970	3	1	703	1	0	0	0	0	1	0	0	0	7734	1145	40	1	71	1	IMPDH2	3	49061970	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2035	49061970	148960460	153	43211											
BSN	8927	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	49694040	49694040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	49694040	C	T	49694040	3	4	703	1	0	0	0	0	1	0	0	0	1532	643	23	1	7069	1	BSN	3	49694040	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	632070	49694040	148328390	154	43212											
MST1	4485	hgsc.bcm.edu;mdanderson.org	37	3	49723817	49723817	+	Silent	SNP	G	G	A	rs146923247	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49723817	G	A	49723817	2	1	703	1	0	0	0	0	0	0	0	1	9897	1074	38	1		1	MST1	3	49723817	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	29777	49723817	148298613	155	43213											
MST1R	4486	broad.mit.edu;mdanderson.org	37	3	49940431	49940431	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49940431	G	A	49940431	2	1	703	1	0	0	0	0	0	0	0	1	9898	1136	40	1		1	MST1R	3	49940431	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	216614	49940431	148081999	156	43214											
RBM6	10180	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	50005642	50005642	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	50005642	C	T	50005642	4	4	703	1	0	0	0	0	0	1	0	0	13157	644	23	1	790	1	RBM6	3	50005642	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	65211	50005642	148016788	157	43215											
IFRD2	7866	mdanderson.org	37	3	50329826	50329826	+	Silent	SNP	A	A	G	rs1076872	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	50329826	A	G	50329826	2	3	703	1	0	0	0	0	0	0	0	1	7561	146	6	3		3	IFRD2	3	50329826	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	324184	50329826	147692604	158	43216											
DOCK3	1795	hgsc.bcm.edu;mdanderson.org	37	3	51315164	51315164	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	51315164	G	A	51315164	2	1	703	1	0	0	0	0	0	0	0	1	4690	1074	38	1		1	DOCK3	3	51315164	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	985338	51315164	146707266	159	43217											
DNAH1	25981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	52420183	52420183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	52420183	C	T	52420183	3	4	703	1	0	0	0	0	1	0	0	0	4599	536	19	1	8847	1	DNAH1	3	52420183	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1105019	52420183	145602247	160	43218											
STAB1	23166	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	52552013	52552013	+	Silent	SNP	C	C	T	rs185967985	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	52552013	C	T	52552013	2	4	703	1	0	0	0	0	0	0	0	1	15249	871	31	1		1	STAB1	3	52552013	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	131830	52552013	145470417	161	43219											
CACNA1D	776	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	53757945	53757945	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	53757945	C	T	53757945	2	4	703	1	0	0	0	0	0	0	0	1	2543	755	27	1		1	CACNA1D	3	53757945	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1205932	53757945	144264485	162	43220											
SLMAP	7871	broad.mit.edu	37	3	57843846	57843846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	57843846	G	A	57843846	3	1	703	1	0	0	0	0	1	0	0	0	14762	1116	39	1	673	1	SLMAP	3	57843846	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4085901	57843846	140178584	163	43221											
ATXN7	6314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	63981293	63981293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	63981293	G	A	63981293	3	1	703	1	0	0	0	0	1	0	0	0	1215	1145	40	1	1901	1	ATXN7	3	63981293	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6137447	63981293	134041137	164	43222											
LMOD3	56203	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	69168210	69168210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	69168210	C	A	69168210	3	1	703	1	0	0	0	0	1	0	0	0	8865	796	28	4	394	4	LMOD3	3	69168210	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5186917	69168210	128854220	165	43223											
GPR27	2850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	71804265	71804265	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	71804265	C	T	71804265	2	4	703	1	0	0	0	0	0	0	0	1	6692	805	28	2		2	GPR27	3	71804265	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2636055	71804265	126218165	166	43224											
PPP4R2	151987	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	73096446	73096446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	73096446	G	A	73096446	3	1	703	1	0	0	0	0	1	0	0	0	12414	1059	37	1	236	1	PPP4R2	3	73096446	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1292181	73096446	124925984	167	43225											
ROBO1	6091	hgsc.bcm.edu;ucsc.edu	37	3	78666912	78666912	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	78666912	G	A	78666912	2	1	703	1	0	0	0	0	0	0	0	1	13526	1078	38	1		1	ROBO1	3	78666912	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5570466	78666912	119355518	168	43226											
HTR1F	3355	broad.mit.edu;bcgsc.ca	37	3	88040986	88040986	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	88040986	C	T	88040986	4	4	703	1	0	0	0	0	0	1	0	0	7447	760	27	1	1089	1	HTR1F	3	88040986	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9374074	88040986	109981444	169	43227											
CGGBP1	8545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	88105046	88105046	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	88105046	G	A	88105046	2	1	703	1	0	0	0	0	0	0	0	1	3304	1277	45	2		2	CGGBP1	3	88105046	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	64060	88105046	109917384	170	43228											
EPHA3	2042	broad.mit.edu;bcgsc.ca	37	3	89498501	89498501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	89498501	T	C	89498501	3	2	703	1	0	0	0	0	1	0	0	0	5170	1406	49	3	2553	3	EPHA3	3	89498501	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1393455	89498501	108523929	171	43229											
CRYBG3	131544	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	97607247	97607247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	97607247	G	A	97607247	3	1	703	1	0	0	0	0	1	0	0	0	3915	1232	43	2	1530	2	CRYBG3	3	97607247	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8108746	97607247	100415183	172	43230											
PARP14	54625	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	122420029	122420029	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	122420029	C	T	122420029	2	4	703	1	0	0	0	0	0	0	0	1	11465	535	19	1		1	PARP14	3	122420029	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	24812782	122420029	75602401	173	43231											
CCDC14	64770	broad.mit.edu	37	3	123675252	123675252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	123675252	G	A	123675252	3	1	703	1	0	0	0	0	1	0	0	0	2775	1145	40	1	2525	1	CCDC14	3	123675252	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1255223	123675252	74347178	174	43232											
ROPN1	54763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	123689003	123689003	+	Missense_Mutation	SNP	G	G	A	rs140868038		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	123689003	G	A	123689003	3	1	703	1	0	0	0	0	1	0	0	0	13536	1059	37	1	188	1	ROPN1	3	123689003	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13751	123689003	74333427	175	43233											
KALRN	8997	broad.mit.edu;bcgsc.ca	37	3	123946899	123946899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	123946899	G	T	123946899	3	4	703	1	0	0	0	0	1	0	0	0	7982	1203	42	4	136	4	KALRN	3	123946899	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	257896	123946899	74075531	176	43234											
ITGB5	3693	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	124515406	124515406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	124515406	C	T	124515406	3	4	703	1	0	0	0	0	1	0	0	0	7905	536	19	1	901	1	ITGB5	3	124515406	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	568507	124515406	73507024	177	43235											
PLXNA1	5361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	126723819	126723819	+	Missense_Mutation	SNP	C	C	T	rs117043507	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	126723819	C	T	126723819	3	4	703	1	0	0	0	0	1	0	0	0	12126	652	23	1	1729	1	PLXNA1	3	126723819	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2208413	126723819	71298611	178	43236											
MCM2	4171	broad.mit.edu;bcgsc.ca	37	3	127339608	127339608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	127339608	C	T	127339608	3	4	703	1	0	0	0	0	1	0	0	0	9393	768	27	1	2387	1	MCM2	3	127339608	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	615789	127339608	70682822	179	43237											
IFT122	55764	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	129233374	129233374	+	Missense_Mutation	SNP	G	G	A	rs149245630		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	129233374	G	A	129233374	3	1	703	1	0	0	0	0	1	0	0	0	7562	1087	38	1	3388	1	IFT122	3	129233374	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1893766	129233374	68789056	180	43238											
DNAJC13	23317	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	132172979	132172979	+	Missense_Mutation	SNP	C	C	T	rs147315244		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	132172979	C	T	132172979	3	4	703	1	0	0	0	0	1	0	0	0	4634	527	19	1	940	1	DNAJC13	3	132172979	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2939605	132172979	65849451	181	43239											
DNAJC13	23317	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	132221145	132221145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	132221145	G	A	132221145	3	1	703	1	0	0	0	0	1	0	0	0	4634	1145	40	1	4703	1	DNAJC13	3	132221145	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	48166	132221145	65801285	182	43240											
RAB6B	51560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	133553468	133553468	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	133553468	C	T	133553468	2	4	703	1	0	0	0	0	0	0	0	1	12965	523	19	1		1	RAB6B	3	133553468	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1332323	133553468	64468962	183	43241											
ATR	545	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	142272665	142272665	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	142272665	A	G	142272665	5	3	703	1	0	0	0	0	0	0	1	0	1204	57	2	3	5548	3	ATR	3	142272665	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	8719197	142272665	55749765	184	43242											
C3orf58	205428	broad.mit.edu	37	3	143691481	143691481	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	143691481	G	C	143691481	3	2	703	1	0	0	0	0	1	0	0	0	2238	1116	39	4	309	4	C3orf58	3	143691481	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1418816	143691481	54330949	185	43243											
TM4SF1	4071	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	149093475	149093475	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	149093475	G	A	149093475	4	1	703	1	0	0	0	0	0	1	0	0	15978	1153	40	1	365	1	TM4SF1	3	149093475	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5401994	149093475	48928955	186	43244											
WDR49	151790	broad.mit.edu	37	3	167272531	167272531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	167272531	G	T	167272531	3	4	703	1	0	0	0	0	1	0	0	0	17314	971	34	4	1426	4	WDR49	3	167272531	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	18179056	167272531	30749899	187	43245											
DCUN1D1	54165	broad.mit.edu	37	3	182681755	182681755	+	Silent	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	182681755	A	G	182681755	2	3	703	1	0	0	0	0	0	0	0	1	4315	156	6	3		3	DCUN1D1	3	182681755	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	15409224	182681755	15340675	188	43246											
EIF4G1	1981	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	3	184038753	184038753	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	184038753	G	A	184038753	2	1	703	1	0	0	0	0	0	0	0	1	5038	1074	38	1		1	EIF4G1	3	184038753	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1356998	184038753	13983677	189	43247											
CLCN2	1181	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	184073265	184073265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	184073265	C	T	184073265	3	4	703	1	0	0	0	0	1	0	0	0	3465	768	27	1	1525	1	CLCN2	3	184073265	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	34512	184073265	13949165	190	43248											
DGKG	1608	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	185993360	185993360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	185993360	G	A	185993360	3	1	703	1	0	0	0	0	1	0	0	0	4471	1116	39	1	1553	1	DGKG	3	185993360	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1920095	185993360	12029070	191	43249											
TP63	8626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	189526150	189526150	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	189526150	C	T	189526150	2	4	703	1	0	0	0	0	0	0	0	1	16404	535	19	1		1	TP63	3	189526150	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3532790	189526150	8496280	192	43250											
ATP13A3	79572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	194149621	194149621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	194149621	T	C	194149621	3	2	703	1	0	0	0	0	1	0	0	0	1125	1580	55	3	804	3	ATP13A3	3	194149621	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	4623471	194149621	3872809	193	43251											
DLG1	1739	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	196792176	196792176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	196792176	C	T	196792176	3	4	703	1	0	0	0	0	1	0	0	0	4556	478	17	2	353	2	DLG1	3	196792176	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2642555	196792176	1230254	194	43252											
SLC26A1	10861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	4	983647	983647	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	983647	C	T	983647	2	4	703	1	0	0	0	0	0	0	0	1	14527	639	23	1		1	SLC26A1	4	983647	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10		983647	190170629	195	43253											
FGFRL1	53834	ucsc.edu	37	4	1017489	1017489	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	1017489	A	C	1017489	3	2	703	1	0	0	0	0	1	0	0	0	5876	275	10	5	423	5	FGFRL1	4	1017489	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	33842	1017489	190136787	196	43254											
TACC3	10460	broad.mit.edu	37	4	1746487	1746487	+	Silent	SNP	G	G	A	rs148572882		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1746487	G	A	1746487	2	1	703	1	0	0	0	0	0	0	0	1	15515	1132	40	1		1	TACC3	4	1746487	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	728998	1746487	189407789	197	43255											
NOP14	8602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	4	2950032	2950032	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	2950032	G	A	2950032	2	1	703	1	0	0	0	0	0	0	0	1	10543	1045	37	1		1	NOP14	4	2950032	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1203545	2950032	188204244	198	43256											
HTT	3064	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	3107131	3107131	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	3107131	G	A	3107131	2	1	703	1	0	0	0	0	0	0	0	1	7464	962	34	2		2	HTT	4	3107131	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	157099	3107131	188047145	199	43257											
HGFAC	3083	hgsc.bcm.edu;mdanderson.org	37	4	3446155	3446155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	3446155	G	A	3446155	3	1	703	1	0	0	0	0	1	0	0	0	7093	1203	42	2	738	2	HGFAC	4	3446155	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	339024	3446155	187708121	200	43258											
ZBTB49	166793	ucsc.edu;mdanderson.org	37	4	4322722	4322722	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	4322722	C	T	4322722	2	4	703	1	0	0	0	0	0	0	0	1	17562	845	30	2		2	ZBTB49	4	4322722	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	876567	4322722	186831554	201	43259											
SORCS2	57537	broad.mit.edu	37	4	7725501	7725501	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	7725501	C	T	7725501	2	4	703	1	0	0	0	0	0	0	0	1	14944	639	23	1		1	SORCS2	4	7725501	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3402779	7725501	183428775	202	43260											
CPZ	8532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	8607769	8607769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	8607769	C	T	8607769	3	4	703	1	0	0	0	0	1	0	0	0	3841	643	23	1	781	1	CPZ	4	8607769	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	882268	8607769	182546507	203	43261											
HS3ST1	9957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	4	11401504	11401504	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	11401504	G	A	11401504	2	1	703	1	0	0	0	0	0	0	0	1	7370	1074	38	1		1	HS3ST1	4	11401504	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2793735	11401504	179752772	204	43262											
SLIT2	9353	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	20533609	20533609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	20533609	G	A	20533609	3	1	703	1	0	0	0	0	1	0	0	0	14753	1145	40	1	1682	1	SLIT2	4	20533609	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9132105	20533609	170620667	205	43263											
CCKAR	886	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	26483646	26483646	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	26483646	A	C	26483646	3	2	703	1	0	0	0	0	1	0	0	0	2882	304	11	5	389	5	CCKAR	4	26483646	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5950037	26483646	164670630	206	43264											
PTTG2	10744	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	37962188	37962188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	37962188	C	T	37962188	3	4	703	1	0	0	0	0	1	0	0	0	12834	536	19	1	135	1	PTTG2	4	37962188	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11478542	37962188	153192088	207	43265											
KIAA1211	57482	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	57182448	57182448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	57182448	G	A	57182448	3	1	703	1	0	0	0	0	1	0	0	0	8222	1087	38	1	2798	1	KIAA1211	4	57182448	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	19220260	57182448	133971828	208	43266											
KIAA1211	57482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	57189672	57189672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	57189672	C	T	57189672	3	4	703	1	0	0	0	0	1	0	0	0	8222	536	19	1	3339	1	KIAA1211	4	57189672	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7224	57189672	133964604	209	43267											
PPAT	5471	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	57267640	57267640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	57267640	G	A	57267640	3	1	703	1	0	0	0	0	1	0	0	0	12309	1116	39	1	831	1	PPAT	4	57267640	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	77968	57267640	133886636	210	43268											
SRP72	6731	mdanderson.org;bcgsc.ca	37	4	57344581	57344581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	57344581	A	G	57344581	3	3	703	1	0	0	0	0	1	0	0	0	15169	217	8	3	705	3	SRP72	4	57344581	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	76941	57344581	133809695	211	43269											
SHROOM3	57619	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	77691990	77691990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	77691990	G	A	77691990	3	1	703	1	0	0	0	0	1	0	0	0	14308	1145	40	1	5599	1	SHROOM3	4	77691990	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	20347409	77691990	113462286	212	43270											
FRAS1	80144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	4	79236854	79236854	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	79236854	C	T	79236854	2	4	703	1	0	0	0	0	0	0	0	1	6049	755	27	1		1	FRAS1	4	79236854	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1544864	79236854	111917422	213	43271											
RASGEF1B	153020	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	82366931	82366931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	82366931	C	T	82366931	3	4	703	1	0	0	0	0	1	0	0	0	13083	768	27	1	662	1	RASGEF1B	4	82366931	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3130077	82366931	108787345	214	43272											
SCD5	79966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	83557759	83557759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	83557759	C	T	83557759	3	4	703	1	0	0	0	0	1	0	0	0	13900	768	27	1	213	1	SCD5	4	83557759	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1190828	83557759	107596517	215	43273											
WDFY3	23001	broad.mit.edu	37	4	85758218	85758218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	85758218	A	G	85758218	3	3	703	1	0	0	0	0	1	0	0	0	17282	217	8	3	10431	3	WDFY3	4	85758218	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2200459	85758218	105396058	216	43274											
PTPN13	5783	bcgsc.ca	37	4	87728796	87728796	+	Missense_Mutation	SNP	T	T	C	rs199502086	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	87728796	T	C	87728796	3	2	703	1	0	0	0	0	1	0	0	0	12793	1725	60	3	7018	3	PTPN13	4	87728796	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1970578	87728796	103425480	217	43275											
ADH1C	126	broad.mit.edu	37	4	100268909	100268909	+	RNA	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	100268909	C	T	100268909	1	4	703	0	1	0	0	0	0	0	0	0	309	768	27	1		1	ADH1C	4	100268909	RNA	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12540113	100268909	90885367	218	43276											
EMCN	51705	ucsc.edu;mdanderson.org	37	4	101386644	101386644	+	Silent	SNP	G	G	A	rs115243972	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	101386644	G	A	101386644	2	1	703	1	0	0	0	0	0	0	0	1	5088	1136	40	1		1	EMCN	4	101386644	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1117735	101386644	89767632	219	43277											
SYNPO2	171024	hgsc.bcm.edu;ucsc.edu	37	4	119951253	119951253	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	119951253	C	T	119951253	2	4	703	1	0	0	0	0	0	0	0	1	15469	767	27	1		1	SYNPO2	4	119951253	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	18564609	119951253	71203023	220	43278											
FAT4	79633	broad.mit.edu	37	4	126389786	126389786	+	Missense_Mutation	SNP	A	A	G	rs183593425		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	126389786	A	G	126389786	3	3	703	1	0	0	0	0	1	0	0	0	5699	72	3	3	12061	3	FAT4	4	126389786	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	6438533	126389786	64764490	221	43279											
UCP1	7350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	4	141481158	141481158	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	141481158	T	C	141481158	2	2	703	1	0	0	0	0	0	0	0	1	16942	1625	57	3		3	UCP1	4	141481158	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	15091372	141481158	49673118	222	43280											
DCHS2	54798	broad.mit.edu	37	4	155163876	155163876	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	155163876	C	T	155163876	2	4	703	1	0	0	0	0	0	0	0	1	4290	871	31	1		1	DCHS2	4	155163876	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	13682718	155163876	35990400	223	43281											
DCHS2	54798	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	155254036	155254036	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	155254036	C	T	155254036	2	4	703	1	0	0	0	0	0	0	0	1	4290	755	27	1		1	DCHS2	4	155254036	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	90160	155254036	35900240	224	43282											
DCHS2	54798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	4	155254288	155254288	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	155254288	G	A	155254288	2	1	703	1	0	0	0	0	0	0	0	1	4290	1074	38	1		1	DCHS2	4	155254288	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	252	155254288	35899988	225	43283											
FGB	2244	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	155487066	155487066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	155487066	G	A	155487066	3	1	703	1	0	0	0	0	1	0	0	0	5838	1145	40	1	227	1	FGB	4	155487066	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	232778	155487066	35667210	226	43284											
FGB	2244	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	155487081	155487081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	155487081	C	T	155487081	3	4	703	1	0	0	0	0	1	0	0	0	5838	797	28	2	242	2	FGB	4	155487081	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	15	155487081	35667195	227	43285											
FAM198B	51313	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	159076877	159076877	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	159076877	C	T	159076877	2	4	703	1	0	0	0	0	0	0	0	1	5533	564	20	2		2	FAM198B	4	159076877	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3589796	159076877	32077399	228	43286											
GALNT7	51809	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	174169387	174169387	+	Missense_Mutation	SNP	G	G	A	rs201773910		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	174169387	G	A	174169387	3	1	703	1	0	0	0	0	1	0	0	0	6225	1087	38	1	389	1	GALNT7	4	174169387	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15092510	174169387	16984889	229	43287											
HMGB2	3148	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	174254650	174254650	+	Splice_Site	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	174254650	C	T	174254650	5	4	703	1	0	0	0	0	0	0	1	0	7233	521	18	2	494	2	HMGB2	4	174254650	Splice_Site	SNP	C	TCGA-KN-8428-01A-11D-2310-10	85263	174254650	16899626	230	43288											
SNX25	83891	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	186185677	186185677	+	Missense_Mutation	SNP	C	C	T	rs140041413	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	186185677	C	T	186185677	3	4	703	1	0	0	0	0	1	0	0	0	14909	875	31	1	335	1	SNX25	4	186185677	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11931027	186185677	4968599	231	43289											
F11	2160	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	187209727	187209727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	187209727	G	A	187209727	3	1	703	1	0	0	0	0	1	0	0	0	5339	1059	37	1	1891	1	F11	4	187209727	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1024050	187209727	3944549	232	43290											
FAT1	2195	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	187629557	187629557	+	Silent	SNP	G	G	A	rs202036099		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	187629557	G	A	187629557	2	1	703	1	0	0	0	0	0	0	0	1	5696	1136	40	1		1	FAT1	4	187629557	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	419830	187629557	3524719	233	43291											
FRG1	2483	mdanderson.org	37	4	190876227	190876227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	190876227	G	A	190876227	3	1	703	1	0	0	0	0	1	0	0	0	6053	1261	44	2	371	2	FRG1	4	190876227	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3246670	190876227	278049	234	43292											
C5orf55	116349	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	442635	442635	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	442635	C	T	442635	2	4	703	1	0	0	0	0	0	0	0	1	2313	755	27	1		1	C5orf55	5	442635	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10		442635	180472625	235	43293											
TERT	7015	broad.mit.edu	37	5	1293799	1293799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1293799	G	A	1293799	3	1	703	1	0	0	0	0	1	0	0	0	15776	1087	38	1	2256	1	TERT	5	1293799	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	851164	1293799	179621461	236	43294											
ADAMTS16	170690	broad.mit.edu;mdanderson.org;bcgsc.ca	37	5	5239898	5239898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	5239898	T	C	5239898	3	2	703	1	0	0	0	0	1	0	0	0	261	1638	57	3	2445	3	ADAMTS16	5	5239898	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3946099	5239898	175675362	237	43295											
RAI14	26064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	34821933	34821933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	34821933	A	G	34821933	3	3	703	1	0	0	0	0	1	0	0	0	13021	72	3	3	1206	3	RAI14	5	34821933	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	29582035	34821933	146093327	238	43296											
NIPBL	25836	broad.mit.edu;mdanderson.org;bcgsc.ca	37	5	37000622	37000622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	37000622	C	T	37000622	3	4	703	1	0	0	0	0	1	0	0	0	10435	652	23	1	3494	1	NIPBL	5	37000622	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2178689	37000622	143914638	239	43297											
NIPBL	25836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	37036493	37036493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	37036493	G	A	37036493	3	1	703	1	0	0	0	0	1	0	0	0	10435	1059	37	1	6001	1	NIPBL	5	37036493	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	35871	37036493	143878767	240	43298											
LIFR	3977	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	38510729	38510729	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	38510729	T	C	38510729	2	2	703	1	0	0	0	0	0	0	0	1	8787	1606	56	3		3	LIFR	5	38510729	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1474236	38510729	142404531	241	43299											
DAB2	1601	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	39377146	39377146	+	Silent	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	39377146	G	T	39377146	2	4	703	1	0	0	0	0	0	0	0	1	4220	1335	47	4		4	DAB2	5	39377146	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	866417	39377146	141538114	242	43300											
PTGER4	5734	hgsc.bcm.edu;mdanderson.org	37	5	40681716	40681716	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	40681716	C	T	40681716	2	4	703	1	0	0	0	0	0	0	0	1	12756	776	27	1		1	PTGER4	5	40681716	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1304570	40681716	140233544	243	43301											
NNT	23530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	43613077	43613077	+	Silent	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	43613077	A	G	43613077	2	3	703	1	0	0	0	0	0	0	0	1	10517	204	8	3		3	NNT	5	43613077	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2931361	43613077	137302183	244	43302											
MRPS30	10884	mdanderson.org	37	5	44811198	44811198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	44811198	G	A	44811198	3	1	703	1	0	0	0	0	1	0	0	0	9847	1058	37	1	695	1	MRPS30	5	44811198	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1198121	44811198	136104062	245	43303											
MRPS30	10884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	44812095	44812095	+	Missense_Mutation	SNP	C	C	T	rs61753790		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	44812095	C	T	44812095	3	4	703	1	0	0	0	0	1	0	0	0	9847	527	19	1	836	1	MRPS30	5	44812095	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	897	44812095	136103165	246	43304											
ACTBL2	345651	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	56777945	56777945	+	Missense_Mutation	SNP	C	C	T	rs149395843	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	56777945	C	T	56777945	3	4	703	1	0	0	0	0	1	0	0	0	194	884	31	1	544	1	ACTBL2	5	56777945	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11965850	56777945	124137315	247	43305											
PIK3R1	5295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	67522808	67522808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	67522808	C	T	67522808	3	4	703	1	0	0	0	0	1	0	0	0	11925	893	31	1	307	1	PIK3R1	5	67522808	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	10744863	67522808	113392452	248	43306											
PDE8B	8622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	76645327	76645327	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	76645327	C	T	76645327	2	4	703	1	0	0	0	0	0	0	0	1	11661	767	27	1		1	PDE8B	5	76645327	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9122519	76645327	104269933	249	43307											
THBS4	7060	broad.mit.edu	37	5	79366537	79366537	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	79366537	C	T	79366537	2	4	703	1	0	0	0	0	0	0	0	1	15868	535	19	1		1	THBS4	5	79366537	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2721210	79366537	101548723	250	43308											
ACOT12	134526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	80640001	80640001	+	Missense_Mutation	SNP	G	G	A	rs149103852		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	80640001	G	A	80640001	3	1	703	1	0	0	0	0	1	0	0	0	150	1145	40	1	737	1	ACOT12	5	80640001	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1273464	80640001	100275259	251	43309											
XRCC4	7518	broad.mit.edu;mdanderson.org;bcgsc.ca	37	5	82499423	82499423	+	Missense_Mutation	SNP	C	C	T	rs140143447		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	82499423	C	T	82499423	3	4	703	1	0	0	0	0	1	0	0	0	17467	759	27	1	549	1	XRCC4	5	82499423	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1859422	82499423	98415837	252	43310											
TMEM161B	153396	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	87494939	87494939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	87494939	G	A	87494939	4	1	703	1	0	0	0	0	0	1	0	0	16089	1095	38	1	532	1	TMEM161B	5	87494939	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4995516	87494939	93420321	253	43311											
ANKRD32	84250	broad.mit.edu	37	5	94005883	94005883	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	94005883	T	C	94005883	2	2	703	1	0	0	0	0	0	0	0	1	660	1673	58	3		3	ANKRD32	5	94005883	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	6510944	94005883	86909377	254	43312											
NUDT12	83594	mdanderson.org	37	5	102895830	102895830	+	Silent	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	102895830	A	G	102895830	2	3	703	1	0	0	0	0	0	0	0	1	10735	214	8	3		3	NUDT12	5	102895830	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	8889947	102895830	78019430	255	43313											
PJA2	9867	ucsc.edu;mdanderson.org	37	5	108714549	108714549	+	Silent	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	108714549	A	G	108714549	2	3	703	1	0	0	0	0	0	0	0	1	11969	175	7	3		3	PJA2	5	108714549	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5818719	108714549	72200711	256	43314											
YTHDC2	64848	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	112902857	112902857	+	Missense_Mutation	SNP	G	G	A	rs149048625		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	112902857	G	A	112902857	3	1	703	1	0	0	0	0	1	0	0	0	17509	1145	40	1	2997	1	YTHDC2	5	112902857	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4188308	112902857	68012403	257	43315											
CCDC112	153733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	114607065	114607065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	114607065	G	A	114607065	3	1	703	1	0	0	0	0	1	0	0	0	2751	1087	38	1	428	1	CCDC112	5	114607065	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1704208	114607065	66308195	258	43316											
DMXL1	1657	broad.mit.edu;mdanderson.org;bcgsc.ca	37	5	118500256	118500256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	118500256	T	C	118500256	3	2	703	1	0	0	0	0	1	0	0	0	4596	1580	55	3	4835	3	DMXL1	5	118500256	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3893191	118500256	62415004	259	43317											
FTMT	94033	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	121188112	121188112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	121188112	G	A	121188112	3	1	703	1	0	0	0	0	1	0	0	0	6092	1058	37	1	456	1	FTMT	5	121188112	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2687856	121188112	59727148	260	43318											
SIL1	64374	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	138287496	138287496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	138287496	G	A	138287496	3	1	703	1	0	0	0	0	1	0	0	0	14334	1116	39	1	552	1	SIL1	5	138287496	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	17099384	138287496	42627764	261	43319											
NRG2	9542	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	139251392	139251392	+	Silent	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	139251392	G	T	139251392	2	4	703	1	0	0	0	0	0	0	0	1	10655	1219	43	4		4	NRG2	5	139251392	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	963896	139251392	41663868	262	43320											
ANKHD1	54882	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139815782	139815782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	139815782	G	A	139815782	3	1	703	1	0	0	0	0	1	0	0	0	628	942	33	2	406	2	ANKHD1	5	139815782	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	564390	139815782	41099478	263	43321											
PCDHA6	56142	broad.mit.edu	37	5	140209042	140209042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	140209042	G	A	140209042	3	1	703	1	0	0	0	0	1	0	0	0	11535	1087	38	1	1368	1	PCDHA6	5	140209042	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	393260	140209042	40706218	264	43322											
PCDHA8	56140	hgsc.bcm.edu;mdanderson.org	37	5	140222343	140222343	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	140222343	G	A	140222343	2	1	703	1	0	0	0	0	0	0	0	1	11537	1074	38	1		1	PCDHA8	5	140222343	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13301	140222343	40692917	265	43323											
PCDHA9	9752	hgsc.bcm.edu;mdanderson.org	37	5	140229541	140229541	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	140229541	C	T	140229541	2	4	703	1	0	0	0	0	0	0	0	1	11538	535	19	1		1	PCDHA9	5	140229541	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7198	140229541	40685719	266	43324											
PCDHA11	56138	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	140250128	140250128	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	140250128	C	T	140250128	2	4	703	1	0	0	0	0	0	0	0	1	11528	535	19	1		1	PCDHA11	5	140250128	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	20587	140250128	40665132	267	43325											
PCDHB8	56128	mdanderson.org	37	5	140559320	140559320	+	Missense_Mutation	SNP	G	G	A	rs78133980		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	140559320	G	A	140559320	3	1	703	1	0	0	0	0	1	0	0	0	11555	1348	47	2	1707	2	PCDHB8	5	140559320	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	309192	140559320	40355940	268	43326											
PCDHGA4	56111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	140735119	140735119	+	Missense_Mutation	SNP	C	C	T	rs182004159	by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	140735119	C	T	140735119	3	4	703	1	0	0	0	0	1	0	0	0	11563	759	27	1	354	1	PCDHGA4	5	140735119	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	175799	140735119	40180141	269	43327											
PCDHGB2	56103	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	140740942	140740942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	140740942	G	A	140740942	3	1	703	1	0	0	0	0	1	0	0	0	11570	1175	41	2	1242	2	PCDHGB2	5	140740942	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5823	140740942	40174318	270	43328											
PCDHGB3	56102	broad.mit.edu	37	5	140750096	140750096	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	140750096	G	A	140750096	2	1	703	1	0	0	0	0	0	0	0	1	11571	1074	38	1		1	PCDHGB3	5	140750096	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9154	140750096	40165164	271	43329											
PCDHGB5	56101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	140779700	140779700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	140779700	C	T	140779700	3	4	703	1	0	0	0	0	1	0	0	0	11573	652	23	1	2008	1	PCDHGB5	5	140779700	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	29604	140779700	40135560	272	43330											
RELL2	285613	broad.mit.edu	37	5	141019122	141019122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	141019122	C	T	141019122	3	4	703	1	0	0	0	0	1	0	0	0	13232	652	23	1	423	1	RELL2	5	141019122	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	239422	141019122	39896138	273	43331											
PCDH1	5097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	141233894	141233894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	141233894	G	A	141233894	3	1	703	1	0	0	0	0	1	0	0	0	11513	1116	39	1	290	1	PCDH1	5	141233894	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	214772	141233894	39681366	274	43332											
NR3C1	2908	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	142661564	142661564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	142661564	C	T	142661564	3	4	703	1	0	0	0	0	1	0	0	0	10637	855	30	2	165	2	NR3C1	5	142661564	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1427670	142661564	38253696	275	43333											
SH3RF2	153769	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	145428792	145428792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	145428792	G	A	145428792	3	1	703	1	0	0	0	0	1	0	0	0	14272	1145	40	1	1328	1	SH3RF2	5	145428792	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2767228	145428792	35486468	276	43334											
PPARGC1B	133522	broad.mit.edu	37	5	149212386	149212386	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	149212386	G	A	149212386	2	1	703	1	0	0	0	0	0	0	0	1	12308	1103	39	1		1	PPARGC1B	5	149212386	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3783594	149212386	31702874	277	43335											
GALNT10	55568	broad.mit.edu;mdanderson.org	37	5	153795447	153795447	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	153795447	C	T	153795447	2	4	703	1	0	0	0	0	0	0	0	1	6215	547	19	1		1	GALNT10	5	153795447	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4583061	153795447	27119813	278	43336											
ATP10B	23120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	160047389	160047389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	160047389	G	A	160047389	3	1	703	1	0	0	0	0	1	0	0	0	1117	1059	37	1	2052	1	ATP10B	5	160047389	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6251942	160047389	20867871	279	43337											
GABRA6	2559	bcgsc.ca	37	5	161119027	161119027	+	Missense_Mutation	SNP	A	A	G	rs142999297		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	161119027	A	G	161119027	3	3	703	1	0	0	0	0	1	0	0	0	6172	217	8	3	937	3	GABRA6	5	161119027	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1071638	161119027	19796233	280	43338											
GABRG2	2566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	161531032	161531032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	161531032	G	A	161531032	3	1	703	1	0	0	0	0	1	0	0	0	6179	1130	39	1	915	1	GABRG2	5	161531032	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	412005	161531032	19384228	281	43339											
SLIT3	6586	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	168096804	168096804	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	168096804	G	A	168096804	2	1	703	1	0	0	0	0	0	0	0	1	14754	1074	38	1		1	SLIT3	5	168096804	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6565772	168096804	12818456	282	43340											
KCNIP1	30820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	169931585	169931585	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	169931585	C	T	169931585	2	4	703	1	0	0	0	0	0	0	0	1	8046	639	23	1		1	KCNIP1	5	169931585	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1834781	169931585	10983675	283	43341											
STK10	6793	broad.mit.edu	37	5	171482625	171482626	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	171482626	-	C	171482625	7	5	703	1	0	1	1	0	0	0	0	0	15298	1306	46	0	429	0	STK10	5	171482625	Frame_Shift_Ins	INS	-	TCGA-KN-8428-01A-11D-2310-10	1551040	171482625	9432635	284	43342											
COL23A1	91522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	177679589	177679589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	177679589	C	T	177679589	3	4	703	1	0	0	0	0	1	0	0	0	3684	661	23	1	704	1	COL23A1	5	177679589	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6196964	177679589	3235671	285	43343											
MAML1	9794	broad.mit.edu;mdanderson.org	37	5	179192794	179192794	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	179192794	G	A	179192794	2	1	703	1	0	0	0	0	0	0	0	1	9212	1103	39	1		1	MAML1	5	179192794	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1513205	179192794	1722466	286	43344											
FLT4	2324	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	180052908	180052908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	180052908	C	T	180052908	3	4	703	1	0	0	0	0	1	0	0	0	5951	652	23	1	2801	1	FLT4	5	180052908	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	860114	180052908	862352	287	43345											
FAM50B	26240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	3850118	3850118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	3850118	C	T	3850118	3	4	703	1	0	0	0	0	1	0	0	0	5585	759	27	1	75	1	FAM50B	6	3850118	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		3850118	167264949	288	43346											
RREB1	6239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	7231628	7231628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	7231628	C	T	7231628	3	4	703	1	0	0	0	0	1	0	0	0	13692	536	19	1	3322	1	RREB1	6	7231628	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3381510	7231628	163883439	289	43347											
RREB1	6239	hgsc.bcm.edu	37	6	7247005	7247005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	7247005	C	T	7247005	3	4	703	1	0	0	0	0	1	0	0	0	13692	768	27	1	4356	1	RREB1	6	7247005	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	15377	7247005	163868062	290	43348											
DSP	1832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	7580988	7580988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	7580988	C	T	7580988	3	4	703	1	0	0	0	0	1	0	0	0	4783	536	19	1	4655	1	DSP	6	7580988	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	333983	7580988	163534079	291	43349											
TBC1D7	51256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	13321234	13321234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	13321234	C	T	13321234	3	4	703	1	0	0	0	0	1	0	0	0	15636	768	27	1	614	1	TBC1D7	6	13321234	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5740246	13321234	157793833	292	43350											
HIST1H3C	8352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	26045706	26045706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	26045706	C	T	26045706	3	4	703	1	0	0	0	0	1	0	0	0	7164	565	20	2	70	2	HIST1H3C	6	26045706	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12724472	26045706	145069361	293	43351											
HIST1H1T	3010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	26108074	26108074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	26108074	C	T	26108074	3	4	703	1	0	0	0	0	1	0	0	0	7134	768	27	1	379	1	HIST1H1T	6	26108074	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	62368	26108074	145006993	294	43352											
UBD	10537	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	6	29524017	29524017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	29524017	C	A	29524017	3	1	703	1	0	0	0	0	1	0	0	0	16855	680	24	4	363	4	UBD	6	29524017	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3415943	29524017	141591050	295	43353											
DDR1	780	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	6	30864435	30864435	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	30864435	C	T	30864435	2	4	703	1	0	0	0	0	0	0	0	1	4338	755	27	1		1	DDR1	6	30864435	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1340418	30864435	140250632	296	43354											
HLA-B	3106	mdanderson.org	37	6	31324176	31324176	+	Silent	SNP	C	C	G	rs12721836	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	31324176	C	G	31324176	2	3	703	1	0	0	0	0	0	0	0	1	7203	639	23	4		4	HLA-B	6	31324176	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	459741	31324176	139790891	297	43355											
MICB	4277	bcgsc.ca	37	6	31475183	31475183	+	Missense_Mutation	SNP	C	C	T	rs45470602		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	31475183	C	T	31475183	3	4	703	1	0	0	0	0	1	0	0	0	9582	768	27	1	917	1	MICB	6	31475183	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	151007	31475183	139639884	298	43356											
SLC39A7	7922	ucsc.edu;mdanderson.org	37	6	33169433	33169433	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	33169433	T	C	33169433	2	2	703	1	0	0	0	0	0	0	0	1	14636	1478	51	3		3	SLC39A7	6	33169433	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1694250	33169433	137945634	299	43357											
MDGA1	266727	hgsc.bcm.edu	37	6	37618098	37618098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	37618098	G	A	37618098	3	1	703	1	0	0	0	0	1	0	0	0	9413	1086	38	1	1511	1	MDGA1	6	37618098	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4448665	37618098	133496969	300	43358											
DNAH8	1769	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	38773263	38773263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	38773263	G	A	38773263	3	1	703	1	0	0	0	0	1	0	0	0	4609	1116	39	1	2464	1	DNAH8	6	38773263	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1155165	38773263	132341804	301	43359											
USP49	25862	broad.mit.edu;mdanderson.org;bcgsc.ca	37	6	41767668	41767668	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	41767668	G	A	41767668	4	1	703	1	0	0	0	0	0	1	0	0	17092	1153	40	1	360	1	USP49	6	41767668	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2994405	41767668	129347399	302	43360											
UBR2	23304	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	42641562	42641562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42641562	G	A	42641562	3	1	703	1	0	0	0	0	1	0	0	0	16914	1087	38	1	4412	1	UBR2	6	42641562	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	873894	42641562	128473505	303	43361											
CUL9	23113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	43164505	43164505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	43164505	T	C	43164505	3	2	703	1	0	0	0	0	1	0	0	0	4063	1406	49	3	2746	3	CUL9	6	43164505	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	522943	43164505	127950562	304	43362											
ZNF318	24149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	43309889	43309889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	43309889	C	T	43309889	3	4	703	1	0	0	0	0	1	0	0	0	17848	710	25	2	3514	2	ZNF318	6	43309889	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	145384	43309889	127805178	305	43363											
ZNF318	24149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	43323076	43323076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	43323076	C	A	43323076	3	1	703	1	0	0	0	0	1	0	0	0	17848	797	28	4	4871	4	ZNF318	6	43323076	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	13187	43323076	127791991	306	43364											
ABCC10	89845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	43415467	43415467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	43415467	G	A	43415467	3	1	703	1	0	0	0	0	1	0	0	0	50	1145	40	1	3729	1	ABCC10	6	43415467	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	92391	43415467	127699600	307	43365											
SPATS1	221409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	44329698	44329698	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	44329698	G	A	44329698	2	1	703	1	0	0	0	0	0	0	0	1	15030	1103	39	1		1	SPATS1	6	44329698	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	914231	44329698	126785369	308	43366											
SUPT3H	8464	ucsc.edu;mdanderson.org;bcgsc.ca	37	6	45290634	45290634	+	Missense_Mutation	SNP	G	G	A	rs9472463	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	45290634	G	A	45290634	3	1	703	1	0	0	0	0	1	0	0	0	15409	1145	40	1	1010	1	SUPT3H	6	45290634	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	960936	45290634	125824433	309	43367											
RUNX2	860	mdanderson.org	37	6	45459753	45459753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	45459753	A	G	45459753	3	3	703	1	0	0	0	0	1	0	0	0	13761	217	8	3	795	3	RUNX2	6	45459753	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	169119	45459753	125655314	310	43368											
PKHD1	5314	hgsc.bcm.edu;bcgsc.ca	37	6	51695719	51695719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	51695719	C	A	51695719	3	1	703	1	0	0	0	0	1	0	0	0	11978	681	24	4	4085	4	PKHD1	6	51695719	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6235966	51695719	119419348	311	43369											
TINAG	27283	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	54214609	54214609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	54214609	G	A	54214609	3	1	703	1	0	0	0	0	1	0	0	0	15933	1116	39	1	1021	1	TINAG	6	54214609	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2518890	54214609	116900458	312	43370											
COL21A1	81578	broad.mit.edu	37	6	56044473	56044473	+	Silent	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	56044473	A	G	56044473	2	3	703	1	0	0	0	0	0	0	0	1	3682	407	15	3		3	COL21A1	6	56044473	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1829864	56044473	115070594	313	43371											
DST	667	broad.mit.edu	37	6	56335939	56335939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	56335939	G	A	56335939	3	1	703	1	0	0	0	0	1	0	0	0	4785	1145	40	1	1134	1	DST	6	56335939	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	291466	56335939	114779128	314	43372											
PHIP	55023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	79711796	79711796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	79711796	G	A	79711796	3	1	703	1	0	0	0	0	1	0	0	0	11849	1058	37	1	3862	1	PHIP	6	79711796	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	23375857	79711796	91403271	315	43373											
TTK	7272	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	6	80749554	80749554	+	Missense_Mutation	SNP	G	G	A	rs2230512	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	80749554	G	A	80749554	3	1	703	1	0	0	0	0	1	0	0	0	16732	1058	37	1	2342	1	TTK	6	80749554	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1037758	80749554	90365513	316	43374											
SNX14	57231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	86248557	86248557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	86248557	G	A	86248557	3	1	703	1	0	0	0	0	1	0	0	0	14898	1072	37	1	1422	1	SNX14	6	86248557	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5499003	86248557	84866510	317	43375											
C6orf165	154313	mdanderson.org;bcgsc.ca	37	6	88173817	88173817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	88173817	A	G	88173817	3	3	703	1	0	0	0	0	1	0	0	0	2343	391	14	3	1764	3	C6orf165	6	88173817	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1925260	88173817	82941250	318	43376											
CNR1	1268	broad.mit.edu	37	6	88853689	88853689	+	Silent	SNP	G	G	A	rs75641625	bycluster;byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	88853689	G	A	88853689	2	1	703	1	0	0	0	0	0	0	0	1	3633	1136	40	1		1	CNR1	6	88853689	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	679872	88853689	82261378	319	43377											
ANKRD6	22881	hgsc.bcm.edu;ucsc.edu	37	6	90333671	90333671	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	90333671	T	C	90333671	2	2	703	1	0	0	0	0	0	0	0	1	685	1509	53	3		3	ANKRD6	6	90333671	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1479982	90333671	80781396	320	43378											
BACH2	60468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	90661558	90661558	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	90661558	C	T	90661558	2	4	703	1	0	0	0	0	0	0	0	1	1284	755	27	1		1	BACH2	6	90661558	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	327887	90661558	80453509	321	43379											
MAP3K7	6885	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	91261815	91261815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	91261815	G	A	91261815	3	1	703	1	0	0	0	0	1	0	0	0	9262	1087	38	1	1040	1	MAP3K7	6	91261815	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	600257	91261815	79853252	322	43380											
PRDM1	639	broad.mit.edu;mdanderson.org	37	6	106553250	106553250	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	106553250	G	A	106553250	2	1	703	1	0	0	0	0	0	0	0	1	12460	1132	40	1		1	PRDM1	6	106553250	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15291435	106553250	64561817	323	43381											
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	107000090	107000090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	107000090	A	G	107000090	3	3	703	1	0	0	0	0	1	0	0	0	430	202	7	3	4297	3	AIM1	6	107000090	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	446840	107000090	64114977	324	43382											
SCML4	256380	bcgsc.ca	37	6	108042039	108042039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	108042039	C	T	108042039	3	4	703	1	0	0	0	0	1	0	0	0	13924	623	22	2	415	2	SCML4	6	108042039	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1041949	108042039	63073028	325	43383											
MICAL1	64780	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	6	109766433	109766433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	109766433	C	T	109766433	3	4	703	1	0	0	0	0	1	0	0	0	9576	536	19	1	371	1	MICAL1	6	109766433	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1724394	109766433	61348634	326	43384											
MICAL1	64780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	109769510	109769510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	109769510	G	A	109769510	3	1	703	1	0	0	0	0	1	0	0	0	9576	1116	39	1	1504	1	MICAL1	6	109769510	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3077	109769510	61345557	327	43385											
NCOA7	135112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	126210643	126210643	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	126210643	G	A	126210643	2	1	703	1	0	0	0	0	0	0	0	1	10241	1074	38	1		1	NCOA7	6	126210643	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	16441133	126210643	44904424	328	43386											
BCLAF1	9774	hgsc.bcm.edu	37	6	136594328	136594328	+	Splice_Site	DEL	G	G	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	136594328	G	-	136594328	8	5	703	1	0	1	0	1	0	0	1	0	1383	1392	48	0		0	BCLAF1	6	136594328	Splice_Site	DEL	G	TCGA-KN-8428-01A-11D-2310-10	10383685	136594328	34520739	329	43387											
KIAA1244	57221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	138655393	138655393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	138655393	G	A	138655393	3	1	703	1	0	0	0	0	1	0	0	0	8224	1087	38	1	5540	1	KIAA1244	6	138655393	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2061065	138655393	32459674	330	43388											
STXBP5	134957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	147527114	147527114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	147527114	G	A	147527114	3	1	703	1	0	0	0	0	1	0	0	0	15368	1087	38	1	164	1	STXBP5	6	147527114	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8871721	147527114	23587953	331	43389											
TIAM2	26230	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	155450720	155450720	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	155450720	C	T	155450720	2	4	703	1	0	0	0	0	0	0	0	1	15903	535	19	1		1	TIAM2	6	155450720	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7923606	155450720	15664347	332	43390											
NOX3	50508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	155764489	155764489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	155764489	G	A	155764489	3	1	703	1	0	0	0	0	1	0	0	0	10564	1203	42	2	1338	2	NOX3	6	155764489	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	313769	155764489	15350578	333	43391											
PARK2	5071	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	162206903	162206903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	162206903	C	T	162206903	3	4	703	1	0	0	0	0	1	0	0	0	11456	536	19	1	649	1	PARK2	6	162206903	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6442414	162206903	8908164	334	43392											
TMEM184A	202915	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	7	1588279	1588279	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1588279	G	A	1588279	2	1	703	1	0	0	0	0	0	0	0	1	16116	1103	39	1		1	TMEM184A	7	1588279	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10		1588279	157550384	335	43393											
RADIL	55698	mdanderson.org	37	7	4876100	4876100	+	Silent	SNP	G	G	A	rs138811640		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	4876100	G	A	4876100	2	1	703	1	0	0	0	0	0	0	0	1	13010	1136	40	1		1	RADIL	7	4876100	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3287821	4876100	154262563	336	43394											
CYTH3	9265	broad.mit.edu;mdanderson.org	37	7	6217521	6217521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	6217521	C	T	6217521	3	4	703	1	0	0	0	0	1	0	0	0	4207	536	19	1	934	1	CYTH3	7	6217521	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1341421	6217521	152921142	337	43395											
COL28A1	340267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	7472278	7472278	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	7472278	G	A	7472278	2	1	703	1	0	0	0	0	0	0	0	1	3688	958	34	2		2	COL28A1	7	7472278	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1254757	7472278	151666385	338	43396											
DGKB	1607	broad.mit.edu	37	7	14620499	14620499	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	14620499	G	A	14620499	4	1	703	1	0	0	0	0	0	1	0	0	4468	1095	38	1	861	1	DGKB	7	14620499	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7148221	14620499	144518164	339	43397											
HDAC9	9734	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	18975462	18975462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	18975462	C	T	18975462	3	4	703	1	0	0	0	0	1	0	0	0	7021	478	17	2	3033	2	HDAC9	7	18975462	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4354963	18975462	140163201	340	43398											
ABCB5	340273	hgsc.bcm.edu;mdanderson.org	37	7	20778687	20778687	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	20778687	G	A	20778687	2	1	703	1	0	0	0	0	0	0	0	1	44	1103	39	1		1	ABCB5	7	20778687	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1803225	20778687	138359976	341	43399											
GARS	2617	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	30662010	30662010	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	30662010	G	A	30662010	2	1	703	1	0	0	0	0	0	0	0	1	6249	1277	45	2		2	GARS	7	30662010	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9883323	30662010	128476653	342	43400											
AQP1	358	ucsc.edu;mdanderson.org	37	7	30951659	30951659	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	30951659	G	A	30951659	2	1	703	1	0	0	0	0	0	0	0	1	821	1103	39	1		1	AQP1	7	30951659	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	289649	30951659	128187004	343	43401											
BMPER	168667	broad.mit.edu;bcgsc.ca	37	7	34006162	34006162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	34006162	C	T	34006162	3	4	703	1	0	0	0	0	1	0	0	0	1468	536	19	1	405	1	BMPER	7	34006162	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3054503	34006162	125132501	344	43402											
URGCP	55665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	43917672	43917672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	43917672	C	T	43917672	3	4	703	1	0	0	0	0	1	0	0	0	17038	893	31	1	1409	1	URGCP	7	43917672	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9911510	43917672	115220991	345	43403											
POLM	27434	mdanderson.org	37	7	44121936	44121936	+	Silent	SNP	C	C	A	rs3218655	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	44121936	C	A	44121936	2	1	703	1	0	0	0	0	0	0	0	1	12213	581	21	4		4	POLM	7	44121936	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	204264	44121936	115016727	346	43404											
NPC1L1	29881	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	44579467	44579467	+	Missense_Mutation	SNP	C	C	T	rs149017550	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	44579467	C	T	44579467	3	4	703	1	0	0	0	0	1	0	0	0	10578	536	19	1	3626	1	NPC1L1	7	44579467	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	457531	44579467	114559196	347	43405											
UPP1	7378	broad.mit.edu	37	7	48134391	48134391	+	Missense_Mutation	SNP	C	C	T	rs11971829	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	48134391	C	T	48134391	3	4	703	1	0	0	0	0	1	0	0	0	17024	536	19	1	13	1	UPP1	7	48134391	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3554924	48134391	111004272	348	43406											
LAT2	7462	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	73630393	73630393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	73630393	C	T	73630393	3	4	703	1	0	0	0	0	1	0	0	0	8652	536	19	1	90	1	LAT2	7	73630393	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	25496002	73630393	85508270	349	43407											
POR	5447	ucsc.edu;mdanderson.org;bcgsc.ca	37	7	75608803	75608803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	75608803	C	T	75608803	3	4	703	1	0	0	0	0	1	0	0	0	12264	536	19	1	282	1	POR	7	75608803	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1978410	75608803	83529860	350	43408											
SRCRB4D	136853	broad.mit.edu;mdanderson.org	37	7	76024631	76024631	+	Silent	SNP	C	C	T	rs139627347		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	76024631	C	T	76024631	2	4	703	1	0	0	0	0	0	0	0	1	15149	755	27	1		1	SRCRB4D	7	76024631	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	415828	76024631	83114032	351	43409											
SRCRB4D	136853	broad.mit.edu;bcgsc.ca	37	7	76030355	76030355	+	Missense_Mutation	SNP	C	C	T	rs77067369	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	76030355	C	T	76030355	3	4	703	1	0	0	0	0	1	0	0	0	15149	768	27	1	1624	1	SRCRB4D	7	76030355	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5724	76030355	83108308	352	43410											
CACNA2D1	781	broad.mit.edu;bcgsc.ca	37	7	81620513	81620513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	81620513	C	T	81620513	3	4	703	1	0	0	0	0	1	0	0	0	2550	739	26	2	1567	2	CACNA2D1	7	81620513	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5590158	81620513	77518150	353	43411											
STEAP2	261729	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	89854552	89854552	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	89854552	C	T	89854552	2	4	703	1	0	0	0	0	0	0	0	1	15290	776	27	1		1	STEAP2	7	89854552	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8234039	89854552	69284111	354	43412											
AKAP9	10142	broad.mit.edu;mdanderson.org;bcgsc.ca	37	7	91631833	91631833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	91631833	T	C	91631833	3	2	703	1	0	0	0	0	1	0	0	0	459	1638	57	3	2632	3	AKAP9	7	91631833	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1777281	91631833	67506830	355	43413											
CDK6	1021	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	92252390	92252390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	92252390	G	A	92252390	3	1	703	1	0	0	0	0	1	0	0	0	3150	1058	37	1	334	1	CDK6	7	92252390	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	620557	92252390	66886273	356	43414											
LMTK2	22853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	97823453	97823453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	97823453	G	A	97823453	3	1	703	1	0	0	0	0	1	0	0	0	8866	1087	38	1	3718	1	LMTK2	7	97823453	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5571063	97823453	61315210	357	43415											
TRRAP	8295	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	98576517	98576517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	98576517	C	T	98576517	3	4	703	1	0	0	0	0	1	0	0	0	16613	768	27	1	8767	1	TRRAP	7	98576517	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	753064	98576517	60562146	358	43416											
CYP3A5	1577	mdanderson.org;bcgsc.ca	37	7	99247772	99247772	+	Missense_Mutation	SNP	A	A	G	rs41279854		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	99247772	A	G	99247772	3	3	703	1	0	0	0	0	1	0	0	0	4182	14	1	3	179	3	CYP3A5	7	99247772	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	671255	99247772	59890891	359	43417											
ZNF3	7551	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	99669271	99669271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	99669271	G	A	99669271	3	1	703	1	0	0	0	0	1	0	0	0	17841	1145	40	1	637	1	ZNF3	7	99669271	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	421499	99669271	59469392	360	43418											
COPS6	10980	broad.mit.edu	37	7	99688529	99688529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	99688529	C	A	99688529	3	1	703	1	0	0	0	0	1	0	0	0	3739	681	24	4	513	4	COPS6	7	99688529	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	19258	99688529	59450134	361	43419											
FBXO24	26261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	100198383	100198383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	100198383	G	A	100198383	3	1	703	1	0	0	0	0	1	0	0	0	5742	1087	38	1	1799	1	FBXO24	7	100198383	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	509854	100198383	58940280	362	43420											
ZAN	7455	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	100334486	100334486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	100334486	G	A	100334486	3	1	703	1	0	0	0	0	1	0	0	0	17525	1087	38	1	322	1	ZAN	7	100334486	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	136103	100334486	58804177	363	43421											
SLC12A9	56996	broad.mit.edu;bcgsc.ca	37	7	100453339	100453339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	100453339	C	T	100453339	3	4	703	1	0	0	0	0	1	0	0	0	14403	652	23	1	338	1	SLC12A9	7	100453339	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	118853	100453339	58685324	364	43422											
SLC12A9	56996	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	100454700	100454700	+	Missense_Mutation	SNP	G	G	A	rs150811167	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	100454700	G	A	100454700	3	1	703	1	0	0	0	0	1	0	0	0	14403	1087	38	1	673	1	SLC12A9	7	100454700	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1361	100454700	58683963	365	43423											
SRRT	51593	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	100484814	100484814	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	100484814	C	T	100484814	2	4	703	1	0	0	0	0	0	0	0	1	15184	535	19	1		1	SRRT	7	100484814	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	30114	100484814	58653849	366	43424											
MYL10	93408	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	101259535	101259535	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	101259535	G	A	101259535	2	1	703	1	0	0	0	0	0	0	0	1	10051	1049	37	1		1	MYL10	7	101259535	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	774721	101259535	57879128	367	43425											
FBXL13	222235	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	102566787	102566787	+	Missense_Mutation	SNP	G	G	A	rs150674888	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	102566787	G	A	102566787	3	1	703	1	0	0	0	0	1	0	0	0	5716	1116	39	1	1439	1	FBXL13	7	102566787	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1307252	102566787	56571876	368	43426											
CDHR3	222256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	105669000	105669000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	105669000	C	T	105669000	3	4	703	1	0	0	0	0	1	0	0	0	3122	536	19	1	2342	1	CDHR3	7	105669000	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3102213	105669000	53469663	369	43427											
LAMB1	3912	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	107605032	107605032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	107605032	A	G	107605032	3	3	703	1	0	0	0	0	1	0	0	0	8617	420	15	3	3781	3	LAMB1	7	107605032	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1936032	107605032	51533631	370	43428											
LAMB4	22798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	107717415	107717415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	107717415	C	T	107717415	3	4	703	1	0	0	0	0	1	0	0	0	8620	768	27	1	3259	1	LAMB4	7	107717415	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	112383	107717415	51421248	371	43429											
DOCK4	9732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	111368531	111368531	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	111368531	C	T	111368531	2	4	703	1	0	0	0	0	0	0	0	1	4691	755	27	1		1	DOCK4	7	111368531	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3651116	111368531	47770132	372	43430											
WNT2	7472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	116918232	116918232	+	Missense_Mutation	SNP	C	C	T	rs143749132		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	116918232	C	T	116918232	3	4	703	1	0	0	0	0	1	0	0	0	17398	768	27	1	26	1	WNT2	7	116918232	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5549701	116918232	42220431	373	43431											
CTTNBP2	83992	hgsc.bcm.edu;ucsc.edu	37	7	117407222	117407222	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	117407222	T	C	117407222	2	2	703	1	0	0	0	0	0	0	0	1	4047	1509	53	3		3	CTTNBP2	7	117407222	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	488990	117407222	41731441	374	43432											
WASL	8976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	123346348	123346348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	123346348	C	T	123346348	3	4	703	1	0	0	0	0	1	0	0	0	17268	536	19	1	1130	1	WASL	7	123346348	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5939126	123346348	35792315	375	43433											
GRM8	2918	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	126173105	126173105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	126173105	G	T	126173105	3	4	703	1	0	0	0	0	1	0	0	0	6810	1281	45	4	457	4	GRM8	7	126173105	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2826757	126173105	32965558	376	43434											
KLF14	136259	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	130417993	130417993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	130417993	G	A	130417993	3	1	703	1	0	0	0	0	1	0	0	0	8349	1145	40	1	107	1	KLF14	7	130417993	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4244888	130417993	28720670	377	43435											
NUP205	23165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	135292055	135292055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	135292055	C	T	135292055	3	4	703	1	0	0	0	0	1	0	0	0	10766	536	19	1	3217	1	NUP205	7	135292055	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4874062	135292055	23846608	378	43436											
UBN2	254048	broad.mit.edu;hgsc.bcm.edu	37	7	138969008	138969010	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	138969010	CAG	-	138969008	7	5	703	1	0	1	0	1	0	0	0	0	16905	816	29	0	3415	0	UBN2	7	138969008	In_Frame_Del	DEL	CAG	TCGA-KN-8428-01A-11D-2310-10	3676953	138969008	20169655	379	43437	598	2									
UBN2	254048	bcgsc.ca	37	7	138969009	138969011	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	138969011	CAG	-	138969009	7	5	703	1	0	1	0	1	0	0	0	0	16905	188	7	0	3416	0	UBN2	7	138969009	In_Frame_Del	DEL	CAG	TCGA-KN-8428-01A-11D-2310-10	1	138969009	20169654	380	43438	598	2									
OR9A4	130075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	141619431	141619431	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	141619431	C	T	141619431	2	4	703	1	0	0	0	0	0	0	0	1	11256	547	19	1		1	OR9A4	7	141619431	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2650422	141619431	17519232	381	43439											
PRSS1	5644	mdanderson.org	37	7	142460764	142460764	+	Missense_Mutation	SNP	G	G	A	rs200902389		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	142460764	G	A	142460764	3	1	703	1	0	0	0	0	1	0	0	0	12624	1029	36	2	655	2	PRSS1	7	142460764	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	841333	142460764	16677899	382	43440											
PRSS1	5644	mdanderson.org	37	7	142460778	142460778	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	142460778	T	C	142460778	2	2	703	1	0	0	0	0	0	0	0	1	12624	1683	59	3		3	PRSS1	7	142460778	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	14	142460778	16677885	383	43441											
OR2A2	442361	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	143807471	143807471	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	143807471	C	T	143807471	4	4	703	1	0	0	0	0	0	1	0	0	10984	528	19	1	798	1	OR2A2	7	143807471	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1346693	143807471	15331192	384	43442											
SSPO	23145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	149483252	149483252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	149483252	G	A	149483252	3	1	703	1	0	0	0	0	1	0	0	0	15201	1145	40	1	3406	1	SSPO	7	149483252	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5675781	149483252	9655411	385	43443											
TMEM176B	28959	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	150490188	150490188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	150490188	C	T	150490188	3	4	703	1	0	0	0	0	1	0	0	0	16105	710	25	2	236	2	TMEM176B	7	150490188	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1006936	150490188	8648475	386	43444											
KCNH2	3757	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	150648045	150648045	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	150648045	G	A	150648045	2	1	703	1	0	0	0	0	0	0	0	1	8039	1136	40	1		1	KCNH2	7	150648045	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	157857	150648045	8490618	387	43445											
MYOM2	9172	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	2033488	2033488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	2033488	G	A	2033488	3	1	703	1	0	0	0	0	1	0	0	0	10099	1145	40	1	1660	1	MYOM2	8	2033488	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		2033488	144330534	388	43446											
MTUS1	57509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	17503472	17503472	+	Missense_Mutation	SNP	G	G	A	rs148435996	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	17503472	G	A	17503472	3	1	703	1	0	0	0	0	1	0	0	0	9972	1059	37	1	40	1	MTUS1	8	17503472	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15469984	17503472	128860550	389	43447											
CSGALNACT1	55790	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	8	19363316	19363316	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	19363316	C	T	19363316	2	4	703	1	0	0	0	0	0	0	0	1	3940	523	19	1		1	CSGALNACT1	8	19363316	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1859844	19363316	127000706	390	43448											
ATP6V1B2	526	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	20070346	20070346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	20070346	C	T	20070346	3	4	703	1	0	0	0	0	1	0	0	0	1179	768	27	1	891	1	ATP6V1B2	8	20070346	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	707030	20070346	126293676	391	43449											
LZTS1	11178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	20110814	20110814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	20110814	C	T	20110814	3	4	703	1	0	0	0	0	1	0	0	0	9145	768	27	1	1170	1	LZTS1	8	20110814	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	40468	20110814	126253208	392	43450											
XPO7	23039	hgsc.bcm.edu	37	8	21827087	21827087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	21827087	C	T	21827087	3	4	703	1	0	0	0	0	1	0	0	0	17461	898	31	1	294	1	XPO7	8	21827087	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1716273	21827087	124536935	393	43451											
EPB49	2039	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	21924625	21924625	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	21924625	C	T	21924625	2	4	703	1	0	0	0	0	0	0	0	1	5161	738	26	2		2	EPB49	8	21924625	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	97538	21924625	124439397	394	43452											
HR	55806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	21983099	21983099	+	Missense_Mutation	SNP	G	G	A	rs138624433		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	21983099	G	A	21983099	3	1	703	1	0	0	0	0	1	0	0	0	7354	1086	38	1	2081	1	HR	8	21983099	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	58474	21983099	124380923	395	43453											
LGI3	203190	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	22012104	22012104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	22012104	C	T	22012104	3	4	703	1	0	0	0	0	1	0	0	0	8760	768	27	1	1351	1	LGI3	8	22012104	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	29005	22012104	124351918	396	43454											
LOXL2	4017	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	23174480	23174480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	23174480	C	T	23174480	3	4	703	1	0	0	0	0	1	0	0	0	8907	661	23	1	730	1	LOXL2	8	23174480	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1162376	23174480	123189542	397	43455											
LOXL2	4017	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	8	23174516	23174516	+	Missense_Mutation	SNP	C	C	T	rs145002005		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	23174516	C	T	23174516	3	4	703	1	0	0	0	0	1	0	0	0	8907	536	19	1	766	1	LOXL2	8	23174516	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	36	23174516	123189506	398	43456											
NEFL	4747	broad.mit.edu	37	8	24813771	24813771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	24813771	G	A	24813771	3	1	703	1	0	0	0	0	1	0	0	0	10322	1116	39	1	1389	1	NEFL	8	24813771	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1639255	24813771	121550251	399	43457											
KCTD9	54793	broad.mit.edu	37	8	25296836	25296836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	25296836	C	T	25296836	3	4	703	1	0	0	0	0	1	0	0	0	8123	536	19	1	739	1	KCTD9	8	25296836	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	483065	25296836	121067186	400	43458											
CDCA2	157313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	25341585	25341585	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	25341585	G	A	25341585	2	1	703	1	0	0	0	0	0	0	0	1	3088	1310	46	2		2	CDCA2	8	25341585	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	44749	25341585	121022437	401	43459											
DPYSL2	1808	broad.mit.edu;hgsc.bcm.edu	37	8	26513189	26513189	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	26513189	C	T	26513189	2	4	703	1	0	0	0	0	0	0	0	1	4749	639	23	1		1	DPYSL2	8	26513189	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1171604	26513189	119850833	402	43460											
PBK	55872	broad.mit.edu;mdanderson.org;bcgsc.ca	37	8	27679912	27679912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	27679912	C	T	27679912	3	4	703	1	0	0	0	0	1	0	0	0	11495	884	31	1	595	1	PBK	8	27679912	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1166723	27679912	118684110	403	43461											
GTF2E2	2961	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	30436512	30436512	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	30436512	G	A	30436512	4	1	703	1	0	0	0	0	0	1	0	0	6864	1095	38	1	77	1	GTF2E2	8	30436512	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2756600	30436512	115927510	404	43462											
WRN	7486	broad.mit.edu	37	8	30924630	30924630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	30924630	C	T	30924630	3	4	703	1	0	0	0	0	1	0	0	0	17414	652	23	1	604	1	WRN	8	30924630	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	488118	30924630	115439392	405	43463											
BRF2	55290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	37706116	37706116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	37706116	C	T	37706116	3	4	703	1	0	0	0	0	1	0	0	0	1513	884	31	1	1059	1	BRF2	8	37706116	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6781486	37706116	108657906	406	43464											
AP3M2	10947	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	42015607	42015607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42015607	G	A	42015607	3	1	703	1	0	0	0	0	1	0	0	0	748	1058	37	1	428	1	AP3M2	8	42015607	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4309491	42015607	104348415	407	43465											
IKBKB	3551	broad.mit.edu;hgsc.bcm.edu	37	8	42179650	42179650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42179650	G	A	42179650	3	1	703	1	0	0	0	0	1	0	0	0	7618	1058	37	1	1883	1	IKBKB	8	42179650	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	164043	42179650	104184372	408	43466											
SLC20A2	6575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	42296994	42296994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42296994	G	A	42296994	3	1	703	1	0	0	0	0	1	0	0	0	14452	1087	38	1	1070	1	SLC20A2	8	42296994	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	117344	42296994	104067028	409	43467											
HOOK3	84376	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	42873507	42873507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	42873507	A	G	42873507	3	3	703	1	0	0	0	0	1	0	0	0	7291	275	10	3	2109	3	HOOK3	8	42873507	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	576513	42873507	103490515	410	43468											
HGSNAT	138050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	43052122	43052122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	43052122	G	A	43052122	3	1	703	1	0	0	0	0	1	0	0	0	7095	1116	39	1	1554	1	HGSNAT	8	43052122	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	178615	43052122	103311900	411	43469											
OPRK1	4986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	54147439	54147439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	54147439	C	T	54147439	3	4	703	1	0	0	0	0	1	0	0	0	10892	536	19	1	660	1	OPRK1	8	54147439	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11095317	54147439	92216583	412	43470											
NSMAF	8439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	59499082	59499082	+	Missense_Mutation	SNP	G	G	A	rs138530641	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	59499082	G	A	59499082	3	1	703	1	0	0	0	0	1	0	0	0	10681	1145	40	1	388	1	NSMAF	8	59499082	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5351643	59499082	86864940	413	43471											
CHD7	55636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	61766042	61766042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	61766042	A	G	61766042	3	3	703	1	0	0	0	0	1	0	0	0	3332	304	11	3	6876	3	CHD7	8	61766042	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2266960	61766042	84597980	414	43472											
C8orf34	116328	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	69380981	69380981	+	Missense_Mutation	SNP	G	G	A	rs142064557	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	69380981	G	A	69380981	3	1	703	1	0	0	0	0	1	0	0	0	2424	1145	40	1	339	1	C8orf34	8	69380981	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7614939	69380981	76983041	415	43473											
EYA1	2138	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	72129051	72129051	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	72129051	T	C	72129051	2	2	703	1	0	0	0	0	0	0	0	1	5330	1567	55	3		3	EYA1	8	72129051	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	2748070	72129051	74234971	416	43474											
ZFHX4	79776	broad.mit.edu	37	8	77763332	77763332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	77763332	G	A	77763332	3	1	703	1	0	0	0	0	1	0	0	0	17647	1145	40	1	4209	1	ZFHX4	8	77763332	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5634281	77763332	68600690	417	43475											
ZFHX4	79776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	77775707	77775707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	77775707	G	A	77775707	3	1	703	1	0	0	0	0	1	0	0	0	17647	1290	45	2	9795	2	ZFHX4	8	77775707	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12375	77775707	68588315	418	43476											
IMPA1	3612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	82571603	82571603	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	82571603	G	A	82571603	4	1	703	1	0	0	0	0	0	1	0	0	7729	1153	40	1	20	1	IMPA1	8	82571603	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4795896	82571603	63792419	419	43477											
DECR1	1666	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	91029431	91029431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	91029431	C	T	91029431	3	4	703	1	0	0	0	0	1	0	0	0	4384	768	27	1	155	1	DECR1	8	91029431	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8457828	91029431	55334591	420	43478											
KIAA1429	25962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	95541376	95541376	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	95541376	G	A	95541376	4	1	703	1	0	0	0	0	0	1	0	0	8238	1066	37	1	4762	1	KIAA1429	8	95541376	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4511945	95541376	50822646	421	43479											
MATN2	4147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	98943420	98943420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	98943420	C	T	98943420	3	4	703	1	0	0	0	0	1	0	0	0	9341	759	27	1	388	1	MATN2	8	98943420	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3402044	98943420	47420602	422	43480											
AZIN1	51582	broad.mit.edu;mdanderson.org	37	8	103848546	103848546	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	103848546	C	T	103848546	2	4	703	1	0	0	0	0	0	0	0	1	1242	813	29	2		2	AZIN1	8	103848546	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4905126	103848546	42515476	423	43481											
SYBU	55638	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110587782	110587782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	110587782	T	C	110587782	3	2	703	1	0	0	0	0	1	0	0	0	15439	1696	59	3	650	3	SYBU	8	110587782	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	6739236	110587782	35776240	424	43482											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	113657336	113657336	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	113657336	A	G	113657336	5	3	703	1	0	0	0	0	0	0	1	0	3948	405	14	3	8019	3	CSMD3	8	113657336	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3069554	113657336	32706686	425	43483											
TRPS1	7227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	116430676	116430676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	116430676	C	T	116430676	3	4	703	1	0	0	0	0	1	0	0	0	16605	536	19	1	1187	1	TRPS1	8	116430676	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2773340	116430676	29933346	426	43484											
ENPP2	5168	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	120606001	120606001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	120606001	C	T	120606001	3	4	703	1	0	0	0	0	1	0	0	0	5132	661	23	1	1654	1	ENPP2	8	120606001	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4175325	120606001	25758021	427	43485											
ENPP2	5168	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	120628543	120628543	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	120628543	G	A	120628543	4	1	703	1	0	0	0	0	0	1	0	0	5132	1095	38	1	2163	1	ENPP2	8	120628543	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	22542	120628543	25735479	428	43486											
ZHX2	22882	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	123964437	123964437	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	123964437	C	T	123964437	2	4	703	1	0	0	0	0	0	0	0	1	17688	871	31	1		1	ZHX2	8	123964437	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3335894	123964437	22399585	429	43487											
TG	7038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	133953625	133953625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	133953625	C	T	133953625	3	4	703	1	0	0	0	0	1	0	0	0	15825	536	19	1	5173	1	TG	8	133953625	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9989188	133953625	12410397	430	43488											
ZFAT	57623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	135615108	135615108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	135615108	G	A	135615108	3	1	703	1	0	0	0	0	1	0	0	0	17644	1059	37	1	2921	1	ZFAT	8	135615108	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1661483	135615108	10748914	431	43489											
DENND3	22898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	142178160	142178160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	142178160	C	T	142178160	3	4	703	1	0	0	0	0	1	0	0	0	4434	652	23	1	1617	1	DENND3	8	142178160	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6563052	142178160	4185862	432	43490											
BAI1	575	broad.mit.edu	37	8	143566068	143566068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	143566068	G	A	143566068	3	1	703	1	0	0	0	0	1	0	0	0	1298	1145	40	1	2297	1	BAI1	8	143566068	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1387908	143566068	2797954	433	43491											
JRK	8629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	143746611	143746611	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	143746611	C	T	143746611	2	4	703	1	0	0	0	0	0	0	0	1	7971	639	23	1		1	JRK	8	143746611	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	180543	143746611	2617411	434	43492											
MAPK15	225689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	144800421	144800421	+	Missense_Mutation	SNP	G	G	A	rs140275267	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	144800421	G	A	144800421	3	1	703	1	0	0	0	0	1	0	0	0	9284	1145	40	1	249	1	MAPK15	8	144800421	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1053810	144800421	1563601	435	43493											
EPPK1	83481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	144942815	144942815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	144942815	G	A	144942815	3	1	703	1	0	0	0	0	1	0	0	0	5192	1087	38	1	2659	1	EPPK1	8	144942815	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	142394	144942815	1421207	436	43494											
PLEC	5339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	144995547	144995547	+	Silent	SNP	G	G	A	rs186703073	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	144995547	G	A	144995547	2	1	703	1	0	0	0	0	0	0	0	1	12059	1074	38	1		1	PLEC	8	144995547	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	52732	144995547	1368475	437	43495											
SPATC1	375686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	145094825	145094825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	145094825	C	T	145094825	3	4	703	1	0	0	0	0	1	0	0	0	15029	652	23	1	233	1	SPATC1	8	145094825	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	99278	145094825	1269197	438	43496											
GPAA1	8733	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	145138659	145138659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	145138659	C	T	145138659	3	4	703	1	0	0	0	0	1	0	0	0	6594	768	27	1	423	1	GPAA1	8	145138659	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	43834	145138659	1225363	439	43497											
GPAA1	8733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	145139221	145139221	+	Silent	SNP	G	G	A	rs189367473	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	145139221	G	A	145139221	2	1	703	1	0	0	0	0	0	0	0	1	6594	1074	38	1		1	GPAA1	8	145139221	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	562	145139221	1224801	440	43498											
LRRC14	9684	broad.mit.edu;mdanderson.org;bcgsc.ca	37	8	145746758	145746758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	145746758	G	A	145746758	3	1	703	1	0	0	0	0	1	0	0	0	8975	1145	40	1	1388	1	LRRC14	8	145746758	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	607537	145746758	617264	441	43499											
RPL8	6132	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	146015277	146015277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	146015277	G	A	146015277	3	1	703	1	0	0	0	0	1	0	0	0	13615	1203	42	2	91	2	RPL8	8	146015277	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	268519	146015277	348745	442	43500											
SMARCA2	6595	broad.mit.edu;mdanderson.org	37	9	2191375	2191375	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	2191375	C	T	2191375	2	4	703	1	0	0	0	0	0	0	0	1	14782	767	27	1		1	SMARCA2	9	2191375	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10		2191375	139022056	443	43501											
PTPRD	5789	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	8485823	8485823	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	8485823	C	T	8485823	2	4	703	1	0	0	0	0	0	0	0	1	12812	871	31	1		1	PTPRD	9	8485823	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6294448	8485823	132727608	444	43502											
PTPRD	5789	broad.mit.edu	37	9	8507359	8507359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	8507359	C	T	8507359	3	4	703	1	0	0	0	0	1	0	0	0	12812	536	19	1	4287	1	PTPRD	9	8507359	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	21536	8507359	132706072	445	43503											
BNC2	54796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	16552695	16552695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	16552695	C	T	16552695	3	4	703	1	0	0	0	0	1	0	0	0	1475	536	19	1	2809	1	BNC2	9	16552695	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8045336	16552695	124660736	446	43504											
PLIN2	123	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	19121114	19121114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	19121114	G	A	19121114	3	1	703	1	0	0	0	0	1	0	0	0	12097	1145	40	1	970	1	PLIN2	9	19121114	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2568419	19121114	122092317	447	43505											
LINGO2	158038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	27949033	27949033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	27949033	G	T	27949033	3	4	703	1	0	0	0	0	1	0	0	0	8822	971	34	4	187	4	LINGO2	9	27949033	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8827919	27949033	113264398	448	43506											
CCL27	10850	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	34661943	34661943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	34661943	A	G	34661943	3	3	703	1	0	0	0	0	1	0	0	0	2901	201	7	3	5	3	CCL27	9	34661943	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	6712910	34661943	106551488	449	43507											
PIGO	84720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	35095327	35095327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	35095327	C	T	35095327	3	4	703	1	0	0	0	0	1	0	0	0	11901	884	31	1	3073	1	PIGO	9	35095327	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	433384	35095327	106118104	450	43508											
UNC13B	10497	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	35396917	35396917	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	35396917	C	T	35396917	4	4	703	1	0	0	0	0	0	1	0	0	16997	528	19	1	3374	1	UNC13B	9	35396917	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	301590	35396917	105816514	451	43509											
C9orf100	84904	broad.mit.edu;hgsc.bcm.edu	37	9	35664388	35664389	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	35664389	CT	-	35664388	7	5	703	1	0	1	0	1	0	0	0	0	2446	681	24	0	700	0	C9orf100	9	35664388	Frame_Shift_Del	DEL	CT	TCGA-KN-8428-01A-11D-2310-10	267471	35664388	105549043	452	43510											
CREB3	10488	broad.mit.edu	37	9	35736467	35736467	+	Missense_Mutation	SNP	C	C	T	rs190901541		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	35736467	C	T	35736467	3	4	703	1	0	0	0	0	1	0	0	0	3857	652	23	1	894	1	CREB3	9	35736467	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	72079	35736467	105476964	453	43511											
CNTNAP3	79937	broad.mit.edu	37	9	39177437	39177437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	39177437	C	T	39177437	3	4	703	1	0	0	0	0	1	0	0	0	3650	884	31	1	3137	1	CNTNAP3	9	39177437	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3440970	39177437	102035994	454	43512											
FXN	2395	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	71668178	71668178	+	Splice_Site	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	71668178	T	C	71668178	5	2	703	1	0	0	0	0	0	0	1	0	6121	1652	57	3	396	3	FXN	9	71668178	Splice_Site	SNP	T	TCGA-KN-8428-01A-11D-2310-10	32490741	71668178	69545253	455	43513											
PCSK5	5125	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	78641898	78641898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	78641898	G	A	78641898	3	1	703	1	0	0	0	0	1	0	0	0	11610	1145	40	1	595	1	PCSK5	9	78641898	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6973720	78641898	62571533	456	43514											
PRUNE2	158471	broad.mit.edu	37	9	79322501	79322501	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	79322501	T	C	79322501	2	2	703	1	0	0	0	0	0	0	0	1	12651	1722	60	3		3	PRUNE2	9	79322501	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	680603	79322501	61890930	457	43515											
C9orf64	84267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	86571236	86571236	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	86571236	G	A	86571236	2	1	703	1	0	0	0	0	0	0	0	1	2491	1103	39	1		1	C9orf64	9	86571236	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7248735	86571236	54642195	458	43516											
SLC28A3	64078	broad.mit.edu	37	9	86895780	86895780	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	86895780	G	A	86895780	2	1	703	1	0	0	0	0	0	0	0	1	14546	1048	37	1		1	SLC28A3	9	86895780	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	324544	86895780	54317651	459	43517											
SHC3	53358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	91692802	91692802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	91692802	C	T	91692802	3	4	703	1	0	0	0	0	1	0	0	0	14285	536	19	1	1262	1	SHC3	9	91692802	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4797022	91692802	49520629	460	43518											
FAM120A	23196	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	9	96326776	96326776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	96326776	G	A	96326776	3	1	703	1	0	0	0	0	1	0	0	0	5419	1087	38	1	3381	1	FAM120A	9	96326776	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4633974	96326776	44886655	461	43519											
TEX10	54881	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	103064527	103064527	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	103064527	G	A	103064527	2	1	703	1	0	0	0	0	0	0	0	1	15784	1136	40	1		1	TEX10	9	103064527	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6737751	103064527	38148904	462	43520											
MURC	347273	bcgsc.ca	37	9	103348063	103348063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	103348063	C	T	103348063	3	4	703	1	0	0	0	0	1	0	0	0	9994	652	23	1	431	1	MURC	9	103348063	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	283536	103348063	37865368	463	43521											
MRPL50	54534	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	104153053	104153053	+	Nonsense_Mutation	SNP	G	G	A	rs150313404		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	104153053	G	A	104153053	4	1	703	1	0	0	0	0	0	1	0	0	9821	1124	39	1	308	1	MRPL50	9	104153053	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	804990	104153053	37060378	464	43522											
RGS3	5998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	116353631	116353631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	116353631	G	A	116353631	3	1	703	1	0	0	0	0	1	0	0	0	13319	1145	40	1	3369	1	RGS3	9	116353631	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12200578	116353631	24859800	465	43523											
ZNF618	114991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	116812166	116812166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	116812166	G	A	116812166	3	1	703	1	0	0	0	0	1	0	0	0	18054	1087	38	1	2359	1	ZNF618	9	116812166	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	458535	116812166	24401265	466	43524											
TNC	3371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	117797539	117797539	+	Missense_Mutation	SNP	G	G	A	rs148674204	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	117797539	G	A	117797539	3	1	703	1	0	0	0	0	1	0	0	0	16282	1115	39	1	902	1	TNC	9	117797539	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	985373	117797539	23415892	467	43525											
DBC1	1620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	122001025	122001025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	122001025	C	T	122001025	3	4	703	1	0	0	0	0	1	0	0	0	4249	768	27	1	1708	1	DBC1	9	122001025	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4203486	122001025	19212406	468	43526											
NEK6	10783	broad.mit.edu;ucsc.edu	37	9	127064218	127064218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	127064218	G	A	127064218	3	1	703	1	0	0	0	0	1	0	0	0	10335	1145	40	1	162	1	NEK6	9	127064218	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5063193	127064218	14149213	469	43527											
RABEPK	10244	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	127975736	127975736	+	Missense_Mutation	SNP	G	G	A	rs147509125		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	127975736	G	A	127975736	3	1	703	1	0	0	0	0	1	0	0	0	12976	1145	40	1	309	1	RABEPK	9	127975736	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	911518	127975736	13237695	470	43528											
ZBTB34	403341	broad.mit.edu;mdanderson.org	37	9	129641862	129641862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	129641862	C	T	129641862	3	4	703	1	0	0	0	0	1	0	0	0	17549	643	23	1	174	1	ZBTB34	9	129641862	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1666126	129641862	11571569	471	43529											
ZBTB34	403341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	129642636	129642636	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	129642636	C	T	129642636	4	4	703	1	0	0	0	0	0	1	0	0	17549	644	23	1	948	1	ZBTB34	9	129642636	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	774	129642636	11570795	472	43530											
ANGPTL2	23452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	129870870	129870870	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	129870870	C	T	129870870	2	4	703	1	0	0	0	0	0	0	0	1	614	639	23	1		1	ANGPTL2	9	129870870	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	228234	129870870	11342561	473	43531											
SLC2A8	29988	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	130167788	130167788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	130167788	G	A	130167788	3	1	703	1	0	0	0	0	1	0	0	0	14564	1145	40	1	1274	1	SLC2A8	9	130167788	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	296918	130167788	11045643	474	43532											
FPGS	2356	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	130569287	130569287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	130569287	G	A	130569287	3	1	703	1	0	0	0	0	1	0	0	0	6043	1087	38	1	440	1	FPGS	9	130569287	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	401499	130569287	10644144	475	43533											
PIP5KL1	138429	hgsc.bcm.edu;ucsc.edu	37	9	130684387	130684387	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	130684387	C	T	130684387	2	4	703	1	0	0	0	0	0	0	0	1	11949	697	25	2		2	PIP5KL1	9	130684387	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	115100	130684387	10529044	476	43534											
GOLGA2	2801	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	131023004	131023004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	131023004	G	A	131023004	3	1	703	1	0	0	0	0	1	0	0	0	6559	1086	38	1	1631	1	GOLGA2	9	131023004	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	338617	131023004	10190427	477	43535											
SPTAN1	6709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	131329101	131329101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	131329101	C	T	131329101	3	4	703	1	0	0	0	0	1	0	0	0	15129	652	23	1	84	1	SPTAN1	9	131329101	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	306097	131329101	9884330	478	43536											
DOLPP1	57171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	131849014	131849014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	131849014	G	A	131849014	3	1	703	1	0	0	0	0	1	0	0	0	4706	1058	37	1	643	1	DOLPP1	9	131849014	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	519913	131849014	9364417	479	43537											
NTNG2	84628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	135073709	135073709	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	135073709	G	A	135073709	2	1	703	1	0	0	0	0	0	0	0	1	10712	1074	38	1		1	NTNG2	9	135073709	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3224695	135073709	6139722	480	43538											
GTF3C4	9329	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	135553528	135553528	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	135553528	C	T	135553528	2	4	703	1	0	0	0	0	0	0	0	1	6882	776	27	1		1	GTF3C4	9	135553528	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	479819	135553528	5659903	481	43539											
GTF3C5	9328	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	135919149	135919149	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	135919149	G	A	135919149	2	1	703	1	0	0	0	0	0	0	0	1	6883	1103	39	1		1	GTF3C5	9	135919149	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	365621	135919149	5294282	482	43540											
COL5A1	1289	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	137712006	137712006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	137712006	G	T	137712006	3	4	703	1	0	0	0	0	1	0	0	0	3698	991	35	4	4721	4	COL5A1	9	137712006	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1792857	137712006	3501425	483	43541											
ABCA2	20	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	139908708	139908708	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	139908708	G	A	139908708	2	1	703	1	0	0	0	0	0	0	0	1	32	1074	38	1		1	ABCA2	9	139908708	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2196702	139908708	1304723	484	43542											
ABCA2	20	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	139915957	139915957	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	139915957	G	A	139915957	4	1	703	1	0	0	0	0	0	1	0	0	32	1328	46	2	6694	2	ABCA2	9	139915957	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7249	139915957	1297474	485	43543											
UAP1L1	91373	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	139973538	139973538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	139973538	C	T	139973538	3	4	703	1	0	0	0	0	1	0	0	0	16838	759	27	1	795	1	UAP1L1	9	139973538	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	57581	139973538	1239893	486	43544											
ANAPC2	29882	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	9	140074818	140074818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	140074818	G	A	140074818	3	1	703	1	0	0	0	0	1	0	0	0	603	1116	39	1	779	1	ANAPC2	9	140074818	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	101280	140074818	1138613	487	43545											
RNF208	727800	broad.mit.edu;bcgsc.ca	37	9	140115390	140115390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	140115390	G	A	140115390	3	1	703	1	0	0	0	0	1	0	0	0	13488	1116	39	1	514	1	RNF208	9	140115390	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	40572	140115390	1098041	488	43546											
PNPLA7	375775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	140355132	140355132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	140355132	G	A	140355132	3	1	703	1	0	0	0	0	1	0	0	0	12177	1319	46	2	137	2	PNPLA7	9	140355132	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	239742	140355132	858299	489	43547											
CACNA1B	774	ucsc.edu;mdanderson.org	37	9	140865971	140865971	+	Silent	SNP	C	C	T	rs78326958	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	140865971	C	T	140865971	2	4	703	1	0	0	0	0	0	0	0	1	2541	776	27	1		1	CACNA1B	9	140865971	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	510839	140865971	347460	490	43548											
CACNA1B	774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	140941360	140941360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	140941360	C	T	140941360	3	4	703	1	0	0	0	0	1	0	0	0	2541	652	23	1	3504	1	CACNA1B	9	140941360	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	75389	140941360	272071	491	43549											
WDR37	22884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	1175232	1175232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1175232	G	A	1175232	3	1	703	1	0	0	0	0	1	0	0	0	17303	1116	39	1	1483	1	WDR37	10	1175232	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		1175232	134359515	492	43550											
GDI2	2665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	5827121	5827121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	5827121	G	A	5827121	3	1	703	1	0	0	0	0	1	0	0	0	6328	1203	42	2	658	2	GDI2	10	5827121	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4651889	5827121	129707626	493	43551											
IL2RA	3559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	6063568	6063568	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	6063568	G	A	6063568	2	1	703	1	0	0	0	0	0	0	0	1	7693	1079	38	1		1	IL2RA	10	6063568	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	236447	6063568	129471179	494	43552											
RSU1	6251	broad.mit.edu	37	10	16858984	16858984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	16858984	C	T	16858984	3	4	703	1	0	0	0	0	1	0	0	0	13729	478	17	2	768	2	RSU1	10	16858984	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	10795416	16858984	118675763	495	43553											
NEBL	10529	broad.mit.edu	37	10	21097515	21097515	+	Silent	SNP	G	G	A	rs140245727	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	21097515	G	A	21097515	2	1	703	1	0	0	0	0	0	0	0	1	10310	1136	40	1		1	NEBL	10	21097515	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4238531	21097515	114437232	496	43554											
RASSF4	83937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	45485141	45485141	+	Silent	SNP	C	C	T	rs192302639	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	45485141	C	T	45485141	2	4	703	1	0	0	0	0	0	0	0	1	13101	883	31	1		1	RASSF4	10	45485141	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	24387626	45485141	90049606	497	43555											
C10orf71	118461	hgsc.bcm.edu;mdanderson.org	37	10	50534403	50534403	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	50534403	C	T	50534403	2	4	703	1	0	0	0	0	0	0	0	1	1616	639	23	1		1	C10orf71	10	50534403	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5049262	50534403	85000344	498	43556											
DDX50	79009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	70695777	70695777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	70695777	C	T	70695777	3	4	703	1	0	0	0	0	1	0	0	0	4370	536	19	1	1579	1	DDX50	10	70695777	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	20161374	70695777	64838970	499	43557											
KIAA1274	27143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	72324139	72324139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	72324139	C	T	72324139	3	4	703	1	0	0	0	0	1	0	0	0	8227	768	27	1	2352	1	KIAA1274	10	72324139	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1628362	72324139	63210608	500	43558											
CHST3	9469	hgsc.bcm.edu;mdanderson.org	37	10	73768163	73768163	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	73768163	C	T	73768163	2	4	703	1	0	0	0	0	0	0	0	1	3407	535	19	1		1	CHST3	10	73768163	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1444024	73768163	61766584	501	43559											
TSPAN14	81619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	82269147	82269147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	82269147	C	T	82269147	3	4	703	1	0	0	0	0	1	0	0	0	16650	643	23	1	384	1	TSPAN14	10	82269147	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8500984	82269147	53265600	502	43560											
PANK1	53354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	91371798	91371798	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	91371798	T	C	91371798	2	2	703	1	0	0	0	0	0	0	0	1	11423	1451	51	3		3	PANK1	10	91371798	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	9102651	91371798	44162949	503	43561											
CPEB3	22849	mdanderson.org	37	10	93999850	93999850	+	Silent	SNP	A	A	G	rs3824734	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	93999850	A	G	93999850	2	3	703	1	0	0	0	0	0	0	0	1	3804	291	11	3		3	CPEB3	10	93999850	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2628052	93999850	41534897	504	43562											
MYOF	26509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	95168570	95168570	+	Silent	SNP	T	T	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	95168570	T	G	95168570	2	3	703	1	0	0	0	0	0	0	0	1	10096	1559	54	5		5	MYOF	10	95168570	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1168720	95168570	40366177	505	43563											
PLCE1	51196	broad.mit.edu	37	10	96022395	96022395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	96022395	G	A	96022395	3	1	703	1	0	0	0	0	1	0	0	0	12041	1203	42	2	4295	2	PLCE1	10	96022395	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	853825	96022395	39512352	506	43564											
NOC3L	64318	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	96121511	96121511	+	Missense_Mutation	SNP	C	C	T	rs77771649	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	96121511	C	T	96121511	3	4	703	1	0	0	0	0	1	0	0	0	10521	884	31	1	2354	1	NOC3L	10	96121511	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	99116	96121511	39413236	507	43565											
HPS1	3257	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	10	100177455	100177455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	100177455	G	A	100177455	3	1	703	1	0	0	0	0	1	0	0	0	7346	1116	39	1	137	1	HPS1	10	100177455	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4055944	100177455	35357292	508	43566											
COX15	1355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	101483798	101483798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	101483798	C	T	101483798	3	4	703	1	0	0	0	0	1	0	0	0	3766	768	27	1	657	1	COX15	10	101483798	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1306343	101483798	34050949	509	43567											
DNMBP	23268	broad.mit.edu;ucsc.edu	37	10	101716912	101716912	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	101716912	G	A	101716912	4	1	703	1	0	0	0	0	0	1	0	0	4676	1124	39	1	4470	1	DNMBP	10	101716912	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	233114	101716912	33817835	510	43568											
SEMA4G	57715	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	102743469	102743469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	102743469	T	C	102743469	3	2	703	1	0	0	0	0	1	0	0	0	14049	1580	55	3	2167	3	SEMA4G	10	102743469	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1026557	102743469	32791278	511	43569											
CALHM1	255022	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	105215188	105215188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	105215188	C	T	105215188	3	4	703	1	0	0	0	0	1	0	0	0	2584	536	19	1	172	1	CALHM1	10	105215188	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2471719	105215188	30319559	512	43570											
BTBD16	118663	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	10	124057337	124057337	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	124057337	C	T	124057337	2	4	703	1	0	0	0	0	0	0	0	1	1543	547	19	1		1	BTBD16	10	124057337	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	18842149	124057337	11477410	513	43571											
PLEKHA1	59338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	124172505	124172505	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	124172505	C	T	124172505	4	4	703	1	0	0	0	0	0	1	0	0	12062	711	25	2	430	2	PLEKHA1	10	124172505	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	115168	124172505	11362242	514	43572											
DOCK1	1793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	129216676	129216676	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	129216676	G	A	129216676	2	1	703	1	0	0	0	0	0	0	0	1	4686	1045	37	1		1	DOCK1	10	129216676	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5044171	129216676	6318071	515	43573											
MKI67	4288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	129901498	129901498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	129901498	G	A	129901498	3	1	703	1	0	0	0	0	1	0	0	0	9605	1145	40	1	1176	1	MKI67	10	129901498	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	684822	129901498	5633249	516	43574											
KNDC1	85442	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	134996849	134996849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	134996849	C	T	134996849	3	4	703	1	0	0	0	0	1	0	0	0	8433	782	27	1	376	1	KNDC1	10	134996849	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5095351	134996849	537898	517	43575											
ANO9	338440	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	428582	428582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	428582	C	T	428582	3	4	703	1	0	0	0	0	1	0	0	0	704	768	27	1	1314	1	ANO9	11	428582	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		428582	134577934	518	43576											
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	1253980	A	G	1253980	3	3	703	1	0	0	0	0	1	0	0	0	9986	275	10	3	2120	3	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	825398	1253980	133752536	519	43577											
TRIM68	55128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	4624492	4624492	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	4624492	G	A	4624492	4	1	703	1	0	0	0	0	0	1	0	0	16553	1153	40	1	972	1	TRIM68	11	4624492	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3370512	4624492	130382024	520	43578											
TRIM34	53840	ucsc.edu	37	11	5655127	5655127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	5655127	A	G	5655127	3	3	703	1	0	0	0	0	1	0	0	0	16520	247	9	3	523	3	TRIM34	11	5655127	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1030635	5655127	129351389	521	43579											
DNHD1	144132	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	6555328	6555328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	6555328	G	A	6555328	3	1	703	1	0	0	0	0	1	0	0	0	4670	1145	40	1	2978	1	DNHD1	11	6555328	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	900201	6555328	128451188	522	43580											
TAF10	6881	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	6632970	6632970	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	6632970	G	A	6632970	2	1	703	1	0	0	0	0	0	0	0	1	15526	1136	40	1		1	TAF10	11	6632970	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	77642	6632970	128373546	523	43581											
TPP1	1200	broad.mit.edu;bcgsc.ca	37	11	6638918	6638918	+	Missense_Mutation	SNP	C	C	T	rs201613668		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	6638918	C	T	6638918	3	4	703	1	0	0	0	0	1	0	0	0	16423	661	23	1	1412	1	TPP1	11	6638918	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5948	6638918	128367598	524	43582											
DCHS1	8642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	6650025	6650025	+	Missense_Mutation	SNP	G	G	A	rs146184962	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	6650025	G	A	6650025	3	1	703	1	0	0	0	0	1	0	0	0	4289	1145	40	1	4734	1	DCHS1	11	6650025	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	11107	6650025	128356491	525	43583											
NLRP10	338322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	7982431	7982431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	7982431	C	T	7982431	3	4	703	1	0	0	0	0	1	0	0	0	10479	652	23	1	1243	1	NLRP10	11	7982431	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1332406	7982431	127024085	526	43584											
SBF2	81846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	9802030	9802030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	9802030	C	T	9802030	3	4	703	1	0	0	0	0	1	0	0	0	13872	768	27	1	68	1	SBF2	11	9802030	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1819599	9802030	125204486	527	43585											
KCNC1	3746	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	17793281	17793281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	17793281	C	T	17793281	3	4	703	1	0	0	0	0	1	0	0	0	8021	768	27	1	646	1	KCNC1	11	17793281	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7991251	17793281	117213235	528	43586											
SPTY2D1	144108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	18636542	18636542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	18636542	G	A	18636542	3	1	703	1	0	0	0	0	1	0	0	0	15138	1086	38	1	794	1	SPTY2D1	11	18636542	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	843261	18636542	116369974	529	43587											
ZDHHC13	54503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	19170818	19170818	+	Silent	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	19170818	C	A	19170818	2	1	703	1	0	0	0	0	0	0	0	1	17615	845	30	4		4	ZDHHC13	11	19170818	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	534276	19170818	115835698	530	43588											
BDNF	627	mdanderson.org	37	11	27681033	27681033	+	RNA	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	27681033	A	G	27681033	1	3	703	0	1	0	0	0	0	0	0	0	1394	87	3	3		3	BDNF	11	27681033	RNA	SNP	A	TCGA-KN-8428-01A-11D-2310-10	8510215	27681033	107325483	531	43589											
KIF18A	81930	broad.mit.edu;mdanderson.org	37	11	28110079	28110079	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	28110079	C	G	28110079	3	3	703	1	0	0	0	0	1	0	0	0	8287	913	32	4	1855	4	KIF18A	11	28110079	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	429046	28110079	106896437	532	43590											
FBXO3	26273	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	33770354	33770354	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	33770354	G	A	33770354	2	1	703	1	0	0	0	0	0	0	0	1	5746	1136	40	1		1	FBXO3	11	33770354	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5660275	33770354	101236162	533	43591											
ABTB2	25841	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	34192538	34192538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	34192538	C	T	34192538	3	4	703	1	0	0	0	0	1	0	0	0	103	768	27	1	1651	1	ABTB2	11	34192538	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	422184	34192538	100813978	534	43592											
LRP4	4038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	46911059	46911059	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	46911059	G	A	46911059	2	1	703	1	0	0	0	0	0	0	0	1	8966	1136	40	1		1	LRP4	11	46911059	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12718521	46911059	88095457	535	43593											
GLYATL1	92292	broad.mit.edu;bcgsc.ca	37	11	58711065	58711065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	58711065	C	T	58711065	3	4	703	1	0	0	0	0	1	0	0	0	6487	768	27	1	80	1	GLYATL1	11	58711065	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11800006	58711065	76295451	536	43594											
MS4A15	219995	ucsc.edu;mdanderson.org;bcgsc.ca	37	11	60535105	60535105	+	Missense_Mutation	SNP	G	G	A	rs76307175	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	60535105	G	A	60535105	3	1	703	1	0	0	0	0	1	0	0	0	9866	1145	40	1	331	1	MS4A15	11	60535105	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1824040	60535105	74471411	537	43595											
TMEM109	79073	hgsc.bcm.edu;mdanderson.org	37	11	60689599	60689599	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	60689599	C	T	60689599	4	4	703	1	0	0	0	0	0	1	0	0	16037	760	27	1	704	1	TMEM109	11	60689599	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	154494	60689599	74316917	538	43596											
VPS37C	55048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	60899839	60899839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	60899839	C	T	60899839	3	4	703	1	0	0	0	0	1	0	0	0	17219	536	19	1	550	1	VPS37C	11	60899839	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	210240	60899839	74106677	539	43597											
DDB1	1642	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	61081572	61081572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	61081572	C	T	61081572	3	4	703	1	0	0	0	0	1	0	0	0	4325	536	19	1	1778	1	DDB1	11	61081572	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	181733	61081572	73924944	540	43598											
DAGLA	747	hgsc.bcm.edu	37	11	61511437	61511437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	61511437	C	T	61511437	3	4	703	1	0	0	0	0	1	0	0	0	4228	759	27	1	2679	1	DAGLA	11	61511437	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	429865	61511437	73495079	541	43599											
INCENP	3619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	61906227	61906227	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	61906227	G	A	61906227	2	1	703	1	0	0	0	0	0	0	0	1	7740	1103	39	1		1	INCENP	11	61906227	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	394790	61906227	73100289	542	43600											
AHNAK	79026	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	11	62286931	62286931	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	62286931	G	A	62286931	2	1	703	1	0	0	0	0	0	0	0	1	414	1194	42	2		2	AHNAK	11	62286931	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	380704	62286931	72719585	543	43601											
WDR74	54663	broad.mit.edu;mdanderson.org	37	11	62601996	62601996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	62601996	G	A	62601996	3	1	703	1	0	0	0	0	1	0	0	0	17336	1116	39	1	555	1	WDR74	11	62601996	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	315065	62601996	72404520	544	43602											
CCDC88B	283234	broad.mit.edu	37	11	64120286	64120286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	64120286	C	T	64120286	3	4	703	1	0	0	0	0	1	0	0	0	2866	536	19	1	3505	1	CCDC88B	11	64120286	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1518290	64120286	70886230	545	43603											
ATG2A	23130	broad.mit.edu;bcgsc.ca	37	11	64665396	64665396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	64665396	C	T	64665396	3	4	703	1	0	0	0	0	1	0	0	0	1093	893	31	1	935	1	ATG2A	11	64665396	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	545110	64665396	70341120	546	43604											
TSGA10IP	254187	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	65721060	65721060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	65721060	C	T	65721060	3	4	703	1	0	0	0	0	1	0	0	0	16630	759	27	1	1192	1	TSGA10IP	11	65721060	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1055664	65721060	69285456	547	43605											
SART1	9092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	65744159	65744159	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	65744159	C	T	65744159	2	4	703	1	0	0	0	0	0	0	0	1	13859	535	19	1		1	SART1	11	65744159	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	23099	65744159	69262357	548	43606											
PACS1	55690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	65978707	65978707	+	Missense_Mutation	SNP	G	G	A	rs142653069	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	65978707	G	A	65978707	3	1	703	1	0	0	0	0	1	0	0	0	11379	1145	40	1	651	1	PACS1	11	65978707	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	234548	65978707	69027809	549	43607											
RAB1B	81876	broad.mit.edu;hgsc.bcm.edu	37	11	66039636	66039636	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	66039636	G	A	66039636	2	1	703	1	0	0	0	0	0	0	0	1	12919	1132	40	1		1	RAB1B	11	66039636	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	60929	66039636	68966880	550	43608											
RIN1	9610	broad.mit.edu;mdanderson.org	37	11	66101541	66101541	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	66101541	G	A	66101541	2	1	703	1	0	0	0	0	0	0	0	1	13384	1049	37	1		1	RIN1	11	66101541	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	61905	66101541	68904975	551	43609											
PITPNM1	9600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	67261522	67261522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	67261522	G	A	67261522	3	1	703	1	0	0	0	0	1	0	0	0	11957	1145	40	1	875	1	PITPNM1	11	67261522	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1159981	67261522	67744994	552	43610											
SUV420H1	51111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	67925896	67925896	+	Silent	SNP	G	G	A	rs149239650	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	67925896	G	A	67925896	2	1	703	1	0	0	0	0	0	0	0	1	15426	1136	40	1		1	SUV420H1	11	67925896	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	664374	67925896	67080620	553	43611											
CPT1A	1374	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	68530138	68530138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	68530138	T	C	68530138	3	2	703	1	0	0	0	0	1	0	0	0	3833	1551	54	3	549	3	CPT1A	11	68530138	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	604242	68530138	66476378	554	43612											
ARAP1	116985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	72404807	72404807	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	72404807	G	A	72404807	2	1	703	1	0	0	0	0	0	0	0	1	838	1136	40	1		1	ARAP1	11	72404807	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3874669	72404807	62601709	555	43613											
UCP2	7351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	73689005	73689005	+	Missense_Mutation	SNP	C	C	T	rs145061662		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	73689005	C	T	73689005	3	4	703	1	0	0	0	0	1	0	0	0	16943	768	27	1	686	1	UCP2	11	73689005	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1284198	73689005	61317511	556	43614											
P4HA3	283208	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	11	73988139	73988139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	73988139	C	T	73988139	3	4	703	1	0	0	0	0	1	0	0	0	11365	768	27	1	428	1	P4HA3	11	73988139	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	299134	73988139	61018377	557	43615											
ARRB1	408	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	74988453	74988453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	74988453	C	T	74988453	3	4	703	1	0	0	0	0	1	0	0	0	980	536	19	1	630	1	ARRB1	11	74988453	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1000314	74988453	60018063	558	43616											
TSKU	25987	broad.mit.edu;mdanderson.org	37	11	76506753	76506753	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	76506753	C	T	76506753	2	4	703	1	0	0	0	0	0	0	0	1	16639	883	31	1		1	TSKU	11	76506753	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1518300	76506753	58499763	559	43617											
CHORDC1	26973	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	89935620	89935620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	89935620	G	T	89935620	3	4	703	1	0	0	0	0	1	0	0	0	3367	1203	42	4	50	4	CHORDC1	11	89935620	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13428867	89935620	45070896	560	43618											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	92086239	92086239	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	92086239	T	C	92086239	2	2	703	1	0	0	0	0	0	0	0	1	5698	1722	60	3		3	FAT3	11	92086239	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	2150619	92086239	42920277	561	43619											
FAT3	120114	ucsc.edu;mdanderson.org;bcgsc.ca	37	11	92577151	92577151	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	92577151	C	T	92577151	4	4	703	1	0	0	0	0	0	1	0	0	5698	760	27	1	10688	1	FAT3	11	92577151	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	490912	92577151	42429365	562	43620											
PIWIL4	143689	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	94353042	94353042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	94353042	G	A	94353042	3	1	703	1	0	0	0	0	1	0	0	0	11967	1145	40	1	2355	1	PIWIL4	11	94353042	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1775891	94353042	40653474	563	43621											
BIRC3	330	broad.mit.edu	37	11	102201825	102201825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	102201825	A	G	102201825	3	3	703	1	0	0	0	0	1	0	0	0	1436	72	3	3	1195	3	BIRC3	11	102201825	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	7848783	102201825	32804691	564	43622											
MMP1	4312	broad.mit.edu;bcgsc.ca	37	11	102667418	102667418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	102667418	T	C	102667418	3	2	703	1	0	0	0	0	1	0	0	0	9655	1783	62	3	835	3	MMP1	11	102667418	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	465593	102667418	32339098	565	43623											
MMP12	4321	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	102738681	102738681	+	Missense_Mutation	SNP	G	G	A	rs183458117		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	102738681	G	A	102738681	3	1	703	1	0	0	0	0	1	0	0	0	9658	1049	37	1	691	1	MMP12	11	102738681	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	71263	102738681	32267835	566	43624											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	102987417	102987417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	102987417	G	A	102987417	3	1	703	1	0	0	0	0	1	0	0	0	4848	1058	37	1	758	1	DYNC2H1	11	102987417	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	248736	102987417	32019099	567	43625											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	108201014	108201014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	108201014	C	T	108201014	3	4	703	1	0	0	0	0	1	0	0	0	1109	536	19	1	7575	1	ATM	11	108201014	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5213597	108201014	26805502	568	43626											
PIH1D2	120379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	111938616	111938616	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	111938616	G	A	111938616	2	1	703	1	0	0	0	0	0	0	0	1	11914	1280	45	2		2	PIH1D2	11	111938616	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3737602	111938616	23067900	569	43627											
TTC12	54970	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	113187003	113187003	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	113187003	T	A	113187003	3	1	703	1	0	0	0	0	1	0	0	0	16691	1490	52	5	26	5	TTC12	11	113187003	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1248387	113187003	21819513	570	43628											
C11orf71	54494	broad.mit.edu	37	11	114262382	114262382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	114262382	T	C	114262382	3	2	703	1	0	0	0	0	1	0	0	0	1662	1638	57	3	98	3	C11orf71	11	114262382	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1075379	114262382	20744134	571	43629											
CEP164	22897	broad.mit.edu	37	11	117262985	117262985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	117262985	G	A	117262985	3	1	703	1	0	0	0	0	1	0	0	0	3251	1116	39	1	2389	1	CEP164	11	117262985	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3000603	117262985	17743531	572	43630											
MFRP	83552	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	119212383	119212383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	119212383	G	A	119212383	3	1	703	1	0	0	0	0	1	0	0	0	9533	1116	39	1	128	1	MFRP	11	119212383	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1949398	119212383	15794133	573	43631											
SRPR	6734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	126135007	126135007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	126135007	G	A	126135007	3	1	703	1	0	0	0	0	1	0	0	0	15174	1058	37	1	560	1	SRPR	11	126135007	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6922624	126135007	8871509	574	43632											
KCNJ1	3758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	128709264	128709264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	128709264	C	T	128709264	3	4	703	1	0	0	0	0	1	0	0	0	8050	652	23	1	247	1	KCNJ1	11	128709264	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2574257	128709264	6297252	575	43633											
KCNJ5	3762	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	128781258	128781258	+	Silent	SNP	C	C	T	rs201886526		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	128781258	C	T	128781258	2	4	703	1	0	0	0	0	0	0	0	1	8061	755	27	1		1	KCNJ5	11	128781258	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	71994	128781258	6225258	576	43634											
IGSF9B	22997	broad.mit.edu;mdanderson.org	37	11	133800913	133800913	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	133800913	C	T	133800913	2	4	703	1	0	0	0	0	0	0	0	1	7613	871	31	1		1	IGSF9B	11	133800913	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5019655	133800913	1205603	577	43635											
JAM3	83700	broad.mit.edu;hgsc.bcm.edu	37	11	134009776	134009777	+	Silent	DNP	CC	CC	AA	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	AA	134009777	CC	AA	134009776	2	1	703	1	0	0	0	0	0	0	0	1	7951	855	30	4		4	JAM3	11	134009776	Silent	DNP	CC	TCGA-KN-8428-01A-11D-2310-10	208863	134009776	996740	578	43636											
NCAPD3	23310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	134027834	134027834	+	Missense_Mutation	SNP	G	G	A	rs116394634	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	134027834	G	A	134027834	3	1	703	1	0	0	0	0	1	0	0	0	10213	1145	40	1	353	1	NCAPD3	11	134027834	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	18058	134027834	978682	579	43637											
KCNA1	3736	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	5020791	5020791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	5020791	G	T	5020791	3	4	703	1	0	0	0	0	1	0	0	0	8008	1058	37	4	249	4	KCNA1	12	5020791	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		5020791	128831104	580	43638											
VWF	7450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	6078503	6078503	+	Nonsense_Mutation	SNP	G	G	A	rs61751296	bycluster	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	6078503	G	A	6078503	4	1	703	1	0	0	0	0	0	1	0	0	17258	1124	39	1	870	1	VWF	12	6078503	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1057712	6078503	127773392	581	43639											
PLEKHG6	55200	broad.mit.edu;bcgsc.ca	37	12	6435610	6435610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	6435610	T	C	6435610	3	2	703	1	0	0	0	0	1	0	0	0	12081	1580	55	3	1637	3	PLEKHG6	12	6435610	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	357107	6435610	127416285	582	43640											
SCNN1A	6337	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	6471284	6471284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	6471284	G	T	6471284	3	4	703	1	0	0	0	0	1	0	0	0	13940	991	35	4	1241	4	SCNN1A	12	6471284	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	35674	6471284	127380611	583	43641											
IFFO1	25900	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	6657689	6657689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	6657689	C	T	6657689	3	4	703	1	0	0	0	0	1	0	0	0	7517	884	31	1	446	1	IFFO1	12	6657689	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	186405	6657689	127194206	584	43642											
LPCAT3	10162	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	7088722	7088722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	7088722	G	A	7088722	3	1	703	1	0	0	0	0	1	0	0	0	8919	1087	38	1	790	1	LPCAT3	12	7088722	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	431033	7088722	126763173	585	43643											
C1R	715	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	7188165	7188165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	7188165	C	T	7188165	3	4	703	1	0	0	0	0	1	0	0	0	1974	652	23	1	332	1	C1R	12	7188165	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	99443	7188165	126663730	586	43644											
SLC2A3	6515	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	12	8083895	8083895	+	Silent	SNP	A	A	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	8083895	A	T	8083895	2	4	703	1	0	0	0	0	0	0	0	1	14558	146	6	5		5	SLC2A3	12	8083895	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	895730	8083895	125768000	587	43645											
AICDA	57379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	8757413	8757413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	8757413	C	T	8757413	3	4	703	1	0	0	0	0	1	0	0	0	422	768	27	1	71	1	AICDA	12	8757413	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	673518	8757413	125094482	588	43646											
RIMKLB	57494	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	8902463	8902463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	8902463	C	T	8902463	3	4	703	1	0	0	0	0	1	0	0	0	13379	759	27	1	187	1	RIMKLB	12	8902463	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	145050	8902463	124949432	589	43647											
LOH12CR1	118426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	12618601	12618601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	12618601	T	C	12618601	3	2	703	1	0	0	0	0	1	0	0	0	8898	1464	51	3	496	3	LOH12CR1	12	12618601	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3716138	12618601	121233294	590	43648											
C12orf60	144608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	14976228	14976228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	14976228	C	T	14976228	3	4	703	1	0	0	0	0	1	0	0	0	1705	536	19	1	361	1	C12orf60	12	14976228	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2357627	14976228	118875667	591	43649											
ITPR2	3709	hgsc.bcm.edu;ucsc.edu	37	12	26581017	26581017	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	26581017	T	C	26581017	2	2	703	1	0	0	0	0	0	0	0	1	7928	1683	59	3		3	ITPR2	12	26581017	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	11604789	26581017	107270878	592	43650											
KLHDC5	57542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	27933686	27933686	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	27933686	G	A	27933686	2	1	703	1	0	0	0	0	0	0	0	1	8366	1190	42	2		2	KLHDC5	12	27933686	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1352669	27933686	105918209	593	43651											
LRRK2	120892	broad.mit.edu	37	12	40689347	40689347	+	Silent	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	40689347	C	A	40689347	2	1	703	1	0	0	0	0	0	0	0	1	9040	610	22	4		4	LRRK2	12	40689347	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12755661	40689347	93162548	594	43652											
TMEM117	84216	broad.mit.edu	37	12	44238507	44238507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	44238507	T	C	44238507	3	2	703	1	0	0	0	0	1	0	0	0	16043	1696	59	3	55	3	TMEM117	12	44238507	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3549160	44238507	89613388	595	43653											
HDAC7	51564	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	48185382	48185382	+	Silent	SNP	G	G	A	rs138164422		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	48185382	G	A	48185382	2	1	703	1	0	0	0	0	0	0	0	1	7019	1136	40	1		1	HDAC7	12	48185382	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3946875	48185382	85666513	596	43654											
VDR	7421	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	48272845	48272845	+	Missense_Mutation	SNP	G	G	A	rs147496897	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	48272845	G	A	48272845	3	1	703	1	0	0	0	0	1	0	0	0	17161	1115	39	1	1263	1	VDR	12	48272845	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	87463	48272845	85579050	597	43655											
RND1	27289	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	49251932	49251932	+	Silent	SNP	C	C	T	rs145827381	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	49251932	C	T	49251932	2	4	703	1	0	0	0	0	0	0	0	1	13432	639	23	1		1	RND1	12	49251932	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	979087	49251932	84599963	598	43656											
PRKAG1	5571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	49396782	49396782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	49396782	C	T	49396782	3	4	703	1	0	0	0	0	1	0	0	0	12510	884	31	1	103	1	PRKAG1	12	49396782	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	144850	49396782	84455113	599	43657											
PRPF40B	25766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	50025707	50025707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	50025707	C	T	50025707	3	4	703	1	0	0	0	0	1	0	0	0	12582	782	27	1	237	1	PRPF40B	12	50025707	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	628925	50025707	83826188	600	43658											
NCKAP5L	57701	broad.mit.edu;hgsc.bcm.edu	37	12	50185655	50185655	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	50185655	G	A	50185655	2	1	703	1	0	0	0	0	0	0	0	1	10231	1140	40	1		1	NCKAP5L	12	50185655	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	159948	50185655	83666240	601	43659											
TMPRSS12	283471	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	51252617	51252617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	51252617	C	T	51252617	3	4	703	1	0	0	0	0	1	0	0	0	16256	536	19	1	443	1	TMPRSS12	12	51252617	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1066962	51252617	82599278	602	43660											
GALNT6	11226	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	51752021	51752021	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	51752021	G	A	51752021	4	1	703	1	0	0	0	0	0	1	0	0	6224	1153	40	1	491	1	GALNT6	12	51752021	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	499404	51752021	82099874	603	43661											
NR4A1	3164	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	52449897	52449897	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	52449897	G	A	52449897	2	1	703	1	0	0	0	0	0	0	0	1	10639	1020	36	2		2	NR4A1	12	52449897	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	697876	52449897	81401998	604	43662											
KRT81	3887	broad.mit.edu;hgsc.bcm.edu	37	12	52681795	52681795	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	52681795	G	A	52681795	2	1	703	1	0	0	0	0	0	0	0	1	8502	1103	39	1		1	KRT81	12	52681795	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	231898	52681795	81170100	605	43663	599	2									
KRT81	3887	hgsc.bcm.edu	37	12	52681804	52681804	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	52681804	G	A	52681804	2	1	703	1	0	0	0	0	0	0	0	1	8502	1306	46	2		2	KRT81	12	52681804	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9	52681804	81170091	606	43664	599	2									
KRT81	3887	hgsc.bcm.edu	37	12	52682214	52682214	+	Silent	SNP	C	C	T	rs141008448	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	52682214	C	T	52682214	2	4	703	1	0	0	0	0	0	0	0	1	8502	564	20	2		2	KRT81	12	52682214	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	410	52682214	81169681	607	43665											
KRT6C	286887	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	12	52867039	52867039	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	52867039	G	A	52867039	2	1	703	1	0	0	0	0	0	0	0	1	8489	1103	39	1		1	KRT6C	12	52867039	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	184825	52867039	80984856	608	43666											
KRT6A	3853	mdanderson.org	37	12	52882315	52882315	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	52882315	G	A	52882315	2	1	703	1	0	0	0	0	0	0	0	1	8487	1103	39	1		1	KRT6A	12	52882315	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15276	52882315	80969580	609	43667											
KRT5	3852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	52910639	52910639	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	52910639	G	A	52910639	2	1	703	1	0	0	0	0	0	0	0	1	8486	1079	38	1		1	KRT5	12	52910639	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	28324	52910639	80941256	610	43668											
KRT2	3849	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	12	53045674	53045674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	53045674	C	T	53045674	3	4	703	1	0	0	0	0	1	0	0	0	8464	768	27	1	1702	1	KRT2	12	53045674	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	135035	53045674	80806221	611	43669											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	53663207	53663207	+	Missense_Mutation	SNP	C	C	T	rs145536592		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	53663207	C	T	53663207	3	4	703	1	0	0	0	0	1	0	0	0	5255	527	19	1	487	1	ESPL1	12	53663207	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	617533	53663207	80188688	612	43670											
ESPL1	9700	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53685530	53685530	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	53685530	C	T	53685530	2	4	703	1	0	0	0	0	0	0	0	1	5255	547	19	1		1	ESPL1	12	53685530	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	22323	53685530	80166365	613	43671											
TARBP2	6895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	53895879	53895879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	53895879	C	T	53895879	3	4	703	1	0	0	0	0	1	0	0	0	15568	536	19	1	140	1	TARBP2	12	53895879	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	210349	53895879	79956016	614	43672											
HOXC13	3229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	54333126	54333126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	54333126	G	A	54333126	3	1	703	1	0	0	0	0	1	0	0	0	7319	1087	38	1	438	1	HOXC13	12	54333126	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	437247	54333126	79518769	615	43673											
ITGA7	3679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	56090778	56090778	+	Missense_Mutation	SNP	G	G	A	rs146411608	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	56090778	G	A	56090778	3	1	703	1	0	0	0	0	1	0	0	0	7888	1116	39	1	1827	1	ITGA7	12	56090778	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1757652	56090778	77761117	616	43674											
GDF11	10220	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	56142583	56142583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	56142583	G	A	56142583	3	1	703	1	0	0	0	0	1	0	0	0	6319	1145	40	1	665	1	GDF11	12	56142583	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	51805	56142583	77709312	617	43675											
ERBB3	2065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	56478809	56478809	+	Missense_Mutation	SNP	G	G	A	rs77228285		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	56478809	G	A	56478809	3	1	703	1	0	0	0	0	1	0	0	0	5210	1145	40	1	275	1	ERBB3	12	56478809	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	336226	56478809	77373086	618	43676											
ANKRD52	283373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	56648376	56648376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	56648376	G	A	56648376	3	1	703	1	0	0	0	0	1	0	0	0	678	1057	37	1	2639	1	ANKRD52	12	56648376	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	169567	56648376	77203519	619	43677											
NACA	4666	ucsc.edu;mdanderson.org	37	12	57114975	57114975	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	57114975	T	C	57114975	2	2	703	1	0	0	0	0	0	0	0	1	10140	1567	55	3		3	NACA	12	57114975	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	466599	57114975	76736920	620	43678											
R3HDM2	22864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	57693939	57693939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	57693939	C	T	57693939	3	4	703	1	0	0	0	0	1	0	0	0	12901	536	19	1	2777	1	R3HDM2	12	57693939	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	578964	57693939	76157956	621	43679											
CYP27B1	1594	ucsc.edu;mdanderson.org	37	12	58160795	58160795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	58160795	T	G	58160795	3	3	703	1	0	0	0	0	1	0	0	0	4161	1548	54	5	1532	5	CYP27B1	12	58160795	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	466856	58160795	75691100	622	43680											
DYRK2	8445	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	68052183	68052183	+	Missense_Mutation	SNP	C	C	T	rs138614034	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	68052183	C	T	68052183	3	4	703	1	0	0	0	0	1	0	0	0	4858	768	27	1	1506	1	DYRK2	12	68052183	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9891388	68052183	65799712	623	43681											
CPSF6	11052	broad.mit.edu;ucsc.edu	37	12	69656278	69656278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	69656278	G	A	69656278	3	1	703	1	0	0	0	0	1	0	0	0	3831	1116	39	1	1629	1	CPSF6	12	69656278	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1604095	69656278	64195617	624	43682											
OSBPL8	114882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	76780412	76780412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	76780412	G	A	76780412	3	1	703	1	0	0	0	0	1	0	0	0	11290	1116	39	1	1336	1	OSBPL8	12	76780412	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7124134	76780412	57071483	625	43683											
ZDHHC17	23390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	77222268	77222268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	77222268	A	G	77222268	3	3	703	1	0	0	0	0	1	0	0	0	17619	101	4	3	1177	3	ZDHHC17	12	77222268	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	441856	77222268	56629627	626	43684											
ATP2B1	490	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	89992451	89992451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	89992451	C	T	89992451	3	4	703	1	0	0	0	0	1	0	0	0	1139	768	27	1	403	1	ATP2B1	12	89992451	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12770183	89992451	43859444	627	43685											
VEZT	55591	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	95694384	95694384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	95694384	A	G	95694384	3	3	703	1	0	0	0	0	1	0	0	0	17168	275	10	3	2321	3	VEZT	12	95694384	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5701933	95694384	38157511	628	43686											
TMPO	7112	bcgsc.ca	37	12	98931296	98931296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	98931296	G	T	98931296	3	4	703	1	0	0	0	0	1	0	0	0	16249	991	35	4	2147	4	TMPO	12	98931296	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3236912	98931296	34920599	629	43687											
GNPTAB	79158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	102164267	102164267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	102164267	G	A	102164267	3	1	703	1	0	0	0	0	1	0	0	0	6552	1057	37	1	2792	1	GNPTAB	12	102164267	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3232971	102164267	31687628	630	43688											
GLT8D2	83468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	104391269	104391269	+	Silent	SNP	G	G	A	rs142096211	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	104391269	G	A	104391269	2	1	703	1	0	0	0	0	0	0	0	1	6477	1136	40	1		1	GLT8D2	12	104391269	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2227002	104391269	29460626	631	43689											
ALDH1L2	160428	mdanderson.org	37	12	105464485	105464485	+	Silent	SNP	G	G	A	rs74449999	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	105464485	G	A	105464485	2	1	703	1	0	0	0	0	0	0	0	1	495	1103	39	1		1	ALDH1L2	12	105464485	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1073216	105464485	28387410	632	43690											
RFX4	5992	broad.mit.edu	37	12	107105260	107105260	+	Missense_Mutation	SNP	C	C	T	rs76703390	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	107105260	C	T	107105260	3	4	703	1	0	0	0	0	1	0	0	0	13278	527	19	1	1175	1	RFX4	12	107105260	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1640775	107105260	26746635	633	43691											
SVOP	55530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	109316565	109316565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	109316565	G	A	109316565	3	1	703	1	0	0	0	0	1	0	0	0	15435	1057	37	1	609	1	SVOP	12	109316565	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2211305	109316565	24535330	634	43692											
MYO1H	283446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	109882246	109882246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	109882246	G	A	109882246	3	1	703	1	0	0	0	0	1	0	0	0	10082	1145	40	1	2971	1	MYO1H	12	109882246	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	565681	109882246	23969649	635	43693											
GIT2	9815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	110390995	110390995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	110390995	C	T	110390995	3	4	703	1	0	0	0	0	1	0	0	0	6404	536	19	1	1195	1	GIT2	12	110390995	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	508749	110390995	23460900	636	43694											
OAS1	4938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	113346548	113346548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	113346548	C	T	113346548	3	4	703	1	0	0	0	0	1	0	0	0	10806	652	23	1	394	1	OAS1	12	113346548	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2955553	113346548	20505347	637	43695											
RASAL1	8437	ucsc.edu	37	12	113554915	113554915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	113554915	G	A	113554915	3	1	703	1	0	0	0	0	1	0	0	0	13076	1116	39	1	1776	1	RASAL1	12	113554915	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	208367	113554915	20296980	638	43696											
PLBD2	196463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	113825669	113825669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	113825669	C	A	113825669	3	1	703	1	0	0	0	0	1	0	0	0	12033	854	30	4	1602	4	PLBD2	12	113825669	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	270754	113825669	20026226	639	43697											
TAOK3	51347	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	118588925	118588925	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	118588925	G	A	118588925	2	1	703	1	0	0	0	0	0	0	0	1	15561	1078	38	1		1	TAOK3	12	118588925	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4763256	118588925	15262970	640	43698											
CCDC60	160777	broad.mit.edu;hgsc.bcm.edu	37	12	119968788	119968788	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	119968788	C	T	119968788	4	4	703	1	0	0	0	0	0	1	0	0	2833	876	31	1	1521	1	CCDC60	12	119968788	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1379863	119968788	13883107	641	43699											
CIT	11113	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	120150093	120150093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	120150093	T	C	120150093	3	2	703	1	0	0	0	0	1	0	0	0	3440	1725	60	3	1513	3	CIT	12	120150093	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	181305	120150093	13701802	642	43700											
RNF10	9921	ucsc.edu;mdanderson.org;bcgsc.ca	37	12	121000814	121000814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	121000814	C	A	121000814	3	1	703	1	0	0	0	0	1	0	0	0	13435	912	32	4	1225	4	RNF10	12	121000814	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	850721	121000814	12851081	643	43701											
SCARB1	949	ucsc.edu	37	12	125263104	125263104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	125263104	C	T	125263104	3	4	703	1	0	0	0	0	1	0	0	0	13894	739	26	2	94	2	SCARB1	12	125263104	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4262290	125263104	8588791	644	43702											
GPR133	283383	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	131466490	131466490	+	Silent	SNP	G	G	A	rs145796361	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	131466490	G	A	131466490	2	1	703	1	0	0	0	0	0	0	0	1	6650	1132	40	1		1	GPR133	12	131466490	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6203386	131466490	2385405	645	43703											
EP400	57634	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132474512	132474512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	132474512	G	A	132474512	3	1	703	1	0	0	0	0	1	0	0	0	5151	1145	40	1	2436	1	EP400	12	132474512	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1008022	132474512	1377383	646	43704											
POLE	5426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	133250211	133250211	+	Missense_Mutation	SNP	C	C	T	rs115047349	bycluster;by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	133250211	C	T	133250211	3	4	703	1	0	0	0	0	1	0	0	0	12203	536	19	1	5699	1	POLE	12	133250211	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	775699	133250211	601684	647	43705											
MPHOSPH8	54737	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	13	20220830	20220830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	20220830	C	T	20220830	3	4	703	1	0	0	0	0	1	0	0	0	9734	739	26	2	627	2	MPHOSPH8	13	20220830	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		20220830	94949048	648	43706											
SLC7A1	6541	broad.mit.edu;ucsc.edu	37	13	30088682	30088682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	30088682	C	T	30088682	3	4	703	1	0	0	0	0	1	0	0	0	14705	893	31	1	68	1	SLC7A1	13	30088682	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9867852	30088682	85081196	649	43707											
NBEA	26960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	13	35733452	35733452	+	Silent	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	35733452	A	G	35733452	2	3	703	1	0	0	0	0	0	0	0	1	10194	378	14	3		3	NBEA	13	35733452	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5644770	35733452	79436426	650	43708											
SPG20	23111	broad.mit.edu;ucsc.edu	37	13	36909383	36909383	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	36909383	T	C	36909383	2	2	703	1	0	0	0	0	0	0	0	1	15054	1451	51	3		3	SPG20	13	36909383	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1175931	36909383	78260495	651	43709											
WBP4	11193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	41657033	41657033	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	41657033	C	T	41657033	4	4	703	1	0	0	0	0	0	1	0	0	17273	528	19	1	1152	1	WBP4	13	41657033	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4747650	41657033	73512845	652	43710											
SPERT	220082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	46287927	46287927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	46287927	C	T	46287927	3	4	703	1	0	0	0	0	1	0	0	0	15051	768	27	1	777	1	SPERT	13	46287927	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4630894	46287927	68881951	653	43711											
RB1	5925	broad.mit.edu;hgsc.bcm.edu	37	13	49033915	49033915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	49033915	C	-	49033915	7	5	703	1	0	1	0	1	0	0	0	0	13111	854	30	0	2130	0	RB1	13	49033915	Frame_Shift_Del	DEL	C	TCGA-KN-8428-01A-11D-2310-10	2745988	49033915	66135963	654	43712	600	2									
RB1	5925	bcgsc.ca	37	13	49033916	49033916	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	49033916	C	-	49033916	7	5	703	1	0	1	0	1	0	0	0	0	13111	595	21	0	2131	0	RB1	13	49033916	Frame_Shift_Del	DEL	C	TCGA-KN-8428-01A-11D-2310-10	1	49033916	66135962	655	43713	600	2									
DIS3	22894	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	13	73348179	73348179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	73348179	C	T	73348179	3	4	703	1	0	0	0	0	1	0	0	0	4537	893	31	1	1930	1	DIS3	13	73348179	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	24314263	73348179	41821699	656	43714											
HS6ST3	266722	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	97484970	97484970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	97484970	C	T	97484970	3	4	703	1	0	0	0	0	1	0	0	0	7379	768	27	1	940	1	HS6ST3	13	97484970	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	24136791	97484970	17684908	657	43715											
ATP11A	23250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	113530121	113530121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	113530121	G	A	113530121	3	1	703	1	0	0	0	0	1	0	0	0	1119	1145	40	1	3303	1	ATP11A	13	113530121	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	16045151	113530121	1639757	658	43716											
RASA3	22821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	13	114780772	114780772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	114780772	C	T	114780772	3	4	703	1	0	0	0	0	1	0	0	0	13075	768	27	1	1230	1	RASA3	13	114780772	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1250651	114780772	389106	659	43717											
OR4K13	390433	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	20502143	20502143	+	Missense_Mutation	SNP	C	C	T	rs199734457		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	20502143	C	T	20502143	3	4	703	1	0	0	0	0	1	0	0	0	11075	536	19	1	141	1	OR4K13	14	20502143	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		20502143	86847397	660	43718											
TTC5	91875	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20763923	20763923	+	Nonsense_Mutation	SNP	G	G	A	rs199831317		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	20763923	G	A	20763923	4	1	703	1	0	0	0	0	0	1	0	0	16723	1153	40	1	551	1	TTC5	14	20763923	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	261780	20763923	86585617	661	43719											
TEP1	7011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	20854663	20854663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	20854663	C	A	20854663	3	1	703	1	0	0	0	0	1	0	0	0	15771	797	28	4	5227	4	TEP1	14	20854663	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	90740	20854663	86494877	662	43720											
OR5AU1	390445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	21623218	21623218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	21623218	G	A	21623218	3	1	703	1	0	0	0	0	1	0	0	0	11154	1116	39	1	124	1	OR5AU1	14	21623218	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	768555	21623218	85726322	663	43721											
SUPT16H	11198	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	14	21834651	21834651	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	21834651	G	A	21834651	2	1	703	1	0	0	0	0	0	0	0	1	15408	1136	40	1		1	SUPT16H	14	21834651	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	211433	21834651	85514889	664	43722											
ACIN1	22985	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	14	23530539	23530539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	23530539	G	A	23530539	3	1	703	1	0	0	0	0	1	0	0	0	142	1087	38	1	471	1	ACIN1	14	23530539	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1695888	23530539	83819001	665	43723											
SLC7A8	23428	broad.mit.edu;mdanderson.org;bcgsc.ca	37	14	23596496	23596496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	23596496	G	A	23596496	3	1	703	1	0	0	0	0	1	0	0	0	14717	1086	38	1	113	1	SLC7A8	14	23596496	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	65957	23596496	83753044	666	43724											
LRRC16B	90668	broad.mit.edu	37	14	24529235	24529235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	24529235	G	A	24529235	3	1	703	1	0	0	0	0	1	0	0	0	8979	1087	38	1	2015	1	LRRC16B	14	24529235	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	932739	24529235	82820305	667	43725											
PSME2	5721	broad.mit.edu	37	14	24615753	24615753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	24615753	G	A	24615753	3	1	703	1	0	0	0	0	1	0	0	0	12717	1203	42	2	725	2	PSME2	14	24615753	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	86518	24615753	82733787	668	43726											
TSSK4	283629	broad.mit.edu;mdanderson.org;bcgsc.ca	37	14	24675808	24675808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	24675808	G	A	24675808	3	1	703	1	0	0	0	0	1	0	0	0	16683	1232	43	2	325	2	TSSK4	14	24675808	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	60055	24675808	82673732	669	43727											
TINF2	26277	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	24709841	24709841	+	Missense_Mutation	SNP	C	C	T	rs121918544		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	24709841	C	T	24709841	3	4	703	1	0	0	0	0	1	0	0	0	15935	768	27	1	530	1	TINF2	14	24709841	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	34033	24709841	82639699	670	43728											
NYNRIN	57523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	24877295	24877295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	24877295	G	A	24877295	3	1	703	1	0	0	0	0	1	0	0	0	10803	1058	37	1	425	1	NYNRIN	14	24877295	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	167454	24877295	82472245	671	43729											
NYNRIN	57523	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	14	24879316	24879316	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	24879316	C	T	24879316	2	4	703	1	0	0	0	0	0	0	0	1	10803	535	19	1		1	NYNRIN	14	24879316	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2021	24879316	82470224	672	43730											
HECTD1	25831	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	31609189	31609189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	31609189	G	A	31609189	3	1	703	1	0	0	0	0	1	0	0	0	7046	1087	38	1	5044	1	HECTD1	14	31609189	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6729873	31609189	75740351	673	43731											
NPAS3	64067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	14	34145548	34145548	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	34145548	C	T	34145548	2	4	703	1	0	0	0	0	0	0	0	1	10571	581	21	2		2	NPAS3	14	34145548	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2536359	34145548	73203992	674	43732											
NIN	51199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	51245506	51245506	+	Missense_Mutation	SNP	C	C	T	rs190295991	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	51245506	C	T	51245506	3	4	703	1	0	0	0	0	1	0	0	0	10424	768	27	1	6201	1	NIN	14	51245506	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	17099958	51245506	56104034	675	43733											
GPR137C	283554	broad.mit.edu;mdanderson.org;bcgsc.ca	37	14	53100600	53100600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	53100600	G	A	53100600	3	1	703	1	0	0	0	0	1	0	0	0	6654	1058	37	1	1070	1	GPR137C	14	53100600	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1855094	53100600	54248940	676	43734											
SYT16	83851	broad.mit.edu;bcgsc.ca	37	14	62463128	62463128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	62463128	C	T	62463128	3	4	703	1	0	0	0	0	1	0	0	0	15484	652	23	1	393	1	SYT16	14	62463128	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9362528	62463128	44886412	677	43735											
ZFYVE1	53349	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	73441651	73441651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	73441651	G	A	73441651	3	1	703	1	0	0	0	0	1	0	0	0	17675	1087	38	1	522	1	ZFYVE1	14	73441651	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10978523	73441651	33907889	678	43736											
RBM25	58517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	73570174	73570174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	73570174	G	A	73570174	3	1	703	1	0	0	0	0	1	0	0	0	13138	1087	38	1	1176	1	RBM25	14	73570174	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	128523	73570174	33779366	679	43737											
YLPM1	56252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	75302098	75302098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	75302098	G	A	75302098	3	1	703	1	0	0	0	0	1	0	0	0	17498	1058	37	1	6503	1	YLPM1	14	75302098	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1731924	75302098	32047442	680	43738											
NEK9	91754	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	75555313	75555313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	75555313	G	T	75555313	3	4	703	1	0	0	0	0	1	0	0	0	10338	1000	35	4	477	4	NEK9	14	75555313	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	253215	75555313	31794227	681	43739											
GPR65	8477	broad.mit.edu;mdanderson.org;bcgsc.ca	37	14	88477823	88477823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	88477823	G	A	88477823	3	1	703	1	0	0	0	0	1	0	0	0	6713	1116	39	1	634	1	GPR65	14	88477823	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12922510	88477823	18871717	682	43740											
KCNK10	54207	broad.mit.edu;mdanderson.org	37	14	88652027	88652027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	88652027	G	A	88652027	3	1	703	1	0	0	0	0	1	0	0	0	8066	1145	40	1	151	1	KCNK10	14	88652027	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	174204	88652027	18697513	683	43741											
PTPN21	11099	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	88945933	88945933	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	88945933	C	T	88945933	2	4	703	1	0	0	0	0	0	0	0	1	12799	755	27	1		1	PTPN21	14	88945933	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	293906	88945933	18403607	684	43742											
TTC8	123016	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	14	89307767	89307767	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	89307767	A	G	89307767	5	3	703	1	0	0	0	0	0	0	1	0	16726	434	15	3	510	3	TTC8	14	89307767	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	361834	89307767	18041773	685	43743											
FOXN3	1112	broad.mit.edu	37	14	89817014	89817014	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	89817014	A	G	89817014	5	3	703	1	0	0	0	0	0	0	1	0	6028	405	14	3	810	3	FOXN3	14	89817014	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	509247	89817014	17532526	686	43744											
RPS6KA5	9252	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	91366523	91366523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	91366523	A	C	91366523	3	2	703	1	0	0	0	0	1	0	0	0	13667	40	2	5	1134	5	RPS6KA5	14	91366523	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1549509	91366523	15983017	687	43745											
GOLGA5	9950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	93277911	93277911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	93277911	C	T	93277911	3	4	703	1	0	0	0	0	1	0	0	0	6563	536	19	1	1150	1	GOLGA5	14	93277911	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1911388	93277911	14071629	688	43746											
ATG2B	55102	broad.mit.edu;mdanderson.org;bcgsc.ca	37	14	96772058	96772058	+	Missense_Mutation	SNP	G	G	A	rs138090571		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	96772058	G	A	96772058	3	1	703	1	0	0	0	0	1	0	0	0	1094	1145	40	1	1683	1	ATG2B	14	96772058	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3494147	96772058	10577482	689	43747											
PAPOLA	10914	broad.mit.edu	37	14	97014212	97014212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	97014212	T	A	97014212	3	1	703	1	0	0	0	0	1	0	0	0	11436	1551	54	5	1540	5	PAPOLA	14	97014212	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	242154	97014212	10335328	690	43748											
HHIPL1	84439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	14	100141822	100141822	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	100141822	G	A	100141822	2	1	703	1	0	0	0	0	0	0	0	1	7100	1306	46	2		2	HHIPL1	14	100141822	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3127610	100141822	7207718	691	43749											
RTL1	388015	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	14	101350657	101350657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	101350657	C	T	101350657	3	4	703	1	0	0	0	0	1	0	0	0	13737	893	31	1	3611	1	RTL1	14	101350657	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1208835	101350657	5998883	692	43750											
ZNF839	55778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	102807759	102807759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	102807759	C	T	102807759	3	4	703	1	0	0	0	0	1	0	0	0	18200	652	23	1	2057	1	ZNF839	14	102807759	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1457102	102807759	4541781	693	43751											
CKB	1152	broad.mit.edu;mdanderson.org	37	14	103988669	103988669	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	103988669	G	A	103988669	2	1	703	1	0	0	0	0	0	0	0	1	3448	1136	40	1		1	CKB	14	103988669	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1180910	103988669	3360871	694	43752											
TDRD9	122402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	104431775	104431775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	104431775	C	T	104431775	3	4	703	1	0	0	0	0	1	0	0	0	15748	768	27	1	540	1	TDRD9	14	104431775	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	443106	104431775	2917765	695	43753											
AHNAK2	113146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	105416582	105416582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	105416582	C	T	105416582	3	4	703	1	0	0	0	0	1	0	0	0	415	652	23	1	12185	1	AHNAK2	14	105416582	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	984807	105416582	1932958	696	43754											
CYFIP1	23191	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	22999456	22999456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	22999456	C	T	22999456	3	4	703	1	0	0	0	0	1	0	0	0	4139	768	27	1	3819	1	CYFIP1	15	22999456	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		22999456	79531936	697	43755											
MAGEL2	54551	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	23889371	23889371	+	Silent	SNP	A	A	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	23889371	A	T	23889371	2	4	703	1	0	0	0	0	0	0	0	1	9196	59	3	5		5	MAGEL2	15	23889371	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	889915	23889371	78642021	698	43756											
HERC2	8924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	28427617	28427617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	28427617	G	A	28427617	3	1	703	1	0	0	0	0	1	0	0	0	7065	1145	40	1	5785	1	HERC2	15	28427617	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4538246	28427617	74103775	699	43757											
HERC2	8924	broad.mit.edu	37	15	28478879	28478879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	28478879	G	A	28478879	3	1	703	1	0	0	0	0	1	0	0	0	7065	1174	41	2	10486	2	HERC2	15	28478879	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	51262	28478879	74052513	700	43758											
TJP1	7082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	30010880	30010880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	30010880	G	A	30010880	3	1	703	1	0	0	0	0	1	0	0	0	15941	1086	38	1	1812	1	TJP1	15	30010880	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1532001	30010880	72520512	701	43759											
CHRNA7	1139	mdanderson.org	37	15	32460285	32460285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	32460285	G	A	32460285	3	1	703	1	0	0	0	0	1	0	0	0	3390	1087	38	1	1173	1	CHRNA7	15	32460285	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2449405	32460285	70071107	702	43760											
CASC5	57082	broad.mit.edu;mdanderson.org;bcgsc.ca	37	15	40916787	40916787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	40916787	A	G	40916787	3	3	703	1	0	0	0	0	1	0	0	0	2665	188	7	3	4441	3	CASC5	15	40916787	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	8456502	40916787	61614605	703	43761											
ZFYVE19	84936	hgsc.bcm.edu;mdanderson.org	37	15	41105576	41105576	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	41105576	C	T	41105576	2	4	703	1	0	0	0	0	0	0	0	1	17677	535	19	1		1	ZFYVE19	15	41105576	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	188789	41105576	61425816	704	43762											
RTF1	23168	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	15	41769459	41769459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	41769459	C	T	41769459	3	4	703	1	0	0	0	0	1	0	0	0	13734	759	27	1	1707	1	RTF1	15	41769459	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	663883	41769459	60761933	705	43763											
RPAP1	26015	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41814441	41814441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	41814441	G	A	41814441	3	1	703	1	0	0	0	0	1	0	0	0	13554	1203	42	2	1455	2	RPAP1	15	41814441	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	44982	41814441	60716951	706	43764											
PLA2G4B	100137049	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	42131115	42131115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	42131115	G	T	42131115	3	4	703	1	0	0	0	0	1	0	0	0	12009	1203	42	4	6	4	PLA2G4B	15	42131115	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	316674	42131115	60400277	707	43765											
EHD4	30844	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	15	42193092	42193092	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	42193092	C	T	42193092	2	4	703	1	0	0	0	0	0	0	0	1	4982	755	27	1		1	EHD4	15	42193092	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	61977	42193092	60338300	708	43766											
TMEM87A	25963	broad.mit.edu	37	15	42564314	42564314	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	42564314	T	-	42564314	7	5	703	1	0	1	0	1	0	0	0	0	16222	1493	52	0	1637	0	TMEM87A	15	42564314	Frame_Shift_Del	DEL	T	TCGA-KN-8428-01A-11D-2310-10	371222	42564314	59967078	709	43767											
GANC	2595	broad.mit.edu;mdanderson.org	37	15	42619597	42619597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	42619597	T	C	42619597	3	2	703	1	0	0	0	0	1	0	0	0	6241	1667	58	3	1507	3	GANC	15	42619597	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	55283	42619597	59911795	710	43768											
TGM7	116179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	43585733	43585733	+	Missense_Mutation	SNP	C	C	T	rs150218635	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	43585733	C	T	43585733	3	4	703	1	0	0	0	0	1	0	0	0	15847	768	27	1	2073	1	TGM7	15	43585733	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	966136	43585733	58945659	711	43769											
TP53BP1	7158	broad.mit.edu	37	15	43773188	43773188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	43773188	G	A	43773188	3	1	703	1	0	0	0	0	1	0	0	0	16395	971	34	2	5625	2	TP53BP1	15	43773188	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	187455	43773188	58758204	712	43770											
MAP1A	4130	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	43821457	43821457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	43821457	C	T	43821457	3	4	703	1	0	0	0	0	1	0	0	0	9234	527	19	1	7788	1	MAP1A	15	43821457	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	48269	43821457	58709935	713	43771											
DUOX2	50506	broad.mit.edu;mdanderson.org;bcgsc.ca	37	15	45396231	45396231	+	Missense_Mutation	SNP	G	G	A	rs201955961		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	45396231	G	A	45396231	3	1	703	1	0	0	0	0	1	0	0	0	4803	1116	39	1	2125	1	DUOX2	15	45396231	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1574774	45396231	57135161	714	43772											
FBN1	2200	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	15	48703307	48703307	+	Silent	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	48703307	A	G	48703307	2	3	703	1	0	0	0	0	0	0	0	1	5709	388	14	3		3	FBN1	15	48703307	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3307076	48703307	53828085	715	43773											
FBN1	2200	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	48755319	48755319	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	48755319	C	T	48755319	2	4	703	1	0	0	0	0	0	0	0	1	5709	523	19	1		1	FBN1	15	48755319	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	52012	48755319	53776073	716	43774											
CEP152	22995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	49030737	49030737	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49030737	G	A	49030737	2	1	703	1	0	0	0	0	0	0	0	1	3250	1103	39	1		1	CEP152	15	49030737	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	275418	49030737	53500655	717	43775											
SECISBP2L	9728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	49304966	49304966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	49304966	G	T	49304966	3	4	703	1	0	0	0	0	1	0	0	0	14020	1000	35	4	1723	4	SECISBP2L	15	49304966	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	274229	49304966	53226426	718	43776											
HERC1	8925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	63966709	63966709	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	63966709	G	A	63966709	4	1	703	1	0	0	0	0	0	1	0	0	7064	1095	38	1	7071	1	HERC1	15	63966709	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	14661743	63966709	38564683	719	43777											
PLEKHO2	80301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	65157910	65157910	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	65157910	C	T	65157910	2	4	703	1	0	0	0	0	0	0	0	1	12092	697	25	2		2	PLEKHO2	15	65157910	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1191201	65157910	37373482	720	43778											
MEGF11	84465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	66214758	66214758	+	Silent	SNP	G	G	A	rs146260891		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	66214758	G	A	66214758	2	1	703	1	0	0	0	0	0	0	0	1	9468	1079	38	1		1	MEGF11	15	66214758	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1056848	66214758	36316634	721	43779											
SMAD3	4088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	67358664	67358664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	67358664	C	T	67358664	4	4	703	1	0	0	0	0	0	1	0	0	14772	711	25	2	174	2	SMAD3	15	67358664	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1143906	67358664	35172728	722	43780											
GLCE	26035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	69548276	69548276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	69548276	G	T	69548276	3	4	703	1	0	0	0	0	1	0	0	0	6439	1029	36	4	133	4	GLCE	15	69548276	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2189612	69548276	32983116	723	43781											
MYO9A	4649	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	15	72292238	72292238	+	Missense_Mutation	SNP	G	G	A	rs148826761		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	72292238	G	A	72292238	3	1	703	1	0	0	0	0	1	0	0	0	10091	1145	40	1	6358	1	MYO9A	15	72292238	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2743962	72292238	30239154	724	43782											
HCN4	10021	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	73615982	73615982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	73615982	C	T	73615982	3	4	703	1	0	0	0	0	1	0	0	0	7006	652	23	1	1163	1	HCN4	15	73615982	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1323744	73615982	28915410	725	43783											
PML	5371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	74315583	74315583	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	74315583	C	T	74315583	2	4	703	1	0	0	0	0	0	0	0	1	12142	547	19	1		1	PML	15	74315583	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	699601	74315583	28215809	726	43784											
PML	5371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	74327978	74327978	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	74327978	C	T	74327978	4	4	703	1	0	0	0	0	0	1	0	0	12142	528	19	1	2340	1	PML	15	74327978	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12395	74327978	28203414	727	43785											
CCDC33	80125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	74554873	74554873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	74554873	C	T	74554873	3	4	703	1	0	0	0	0	1	0	0	0	2808	536	19	1	288	1	CCDC33	15	74554873	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	226895	74554873	27976519	728	43786											
LMAN1L	79748	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75108525	75108525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	75108525	G	A	75108525	3	1	703	1	0	0	0	0	1	0	0	0	8844	1116	39	1	209	1	LMAN1L	15	75108525	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	553652	75108525	27422867	729	43787											
SNX33	257364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	75949418	75949418	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	75949418	C	T	75949418	2	4	703	1	0	0	0	0	0	0	0	1	14916	639	23	1		1	SNX33	15	75949418	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	840893	75949418	26581974	730	43788											
CSPG4	1464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	75980709	75980709	+	Silent	SNP	C	C	T	rs144209551		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	75980709	C	T	75980709	2	4	703	1	0	0	0	0	0	0	0	1	3962	755	27	1		1	CSPG4	15	75980709	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	31291	75980709	26550683	731	43789											
TSPAN3	10099	hgsc.bcm.edu	37	15	77363263	77363263	+	Missense_Mutation	SNP	C	C	T	rs111428129		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	77363263	C	T	77363263	3	4	703	1	0	0	0	0	1	0	0	0	16657	536	19	1	755	1	TSPAN3	15	77363263	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1382554	77363263	25168129	732	43790											
RASGRF1	5923	mdanderson.org;bcgsc.ca	37	15	79324607	79324607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	79324607	A	G	79324607	3	3	703	1	0	0	0	0	1	0	0	0	13085	275	10	3	2899	3	RASGRF1	15	79324607	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1961344	79324607	23206785	733	43791											
MESDC1	59274	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	81295560	81295560	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	81295560	C	T	81295560	2	4	703	1	0	0	0	0	0	0	0	1	9487	755	27	1		1	MESDC1	15	81295560	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1970953	81295560	21235832	734	43792											
TMC3	342125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	81630237	81630237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	81630237	C	T	81630237	3	4	703	1	0	0	0	0	1	0	0	0	15998	768	27	1	1208	1	TMC3	15	81630237	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	334677	81630237	20901155	735	43793											
TMC3	342125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	81637207	81637207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	81637207	G	A	81637207	3	1	703	1	0	0	0	0	1	0	0	0	15998	1261	44	2	1924	2	TMC3	15	81637207	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6970	81637207	20894185	736	43794											
HOMER2	9455	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	15	83527811	83527811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	83527811	T	C	83527811	3	2	703	1	0	0	0	0	1	0	0	0	7286	1493	52	3	587	3	HOMER2	15	83527811	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1890604	83527811	19003581	737	43795											
ALPK3	57538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	85403008	85403008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	85403008	G	A	85403008	3	1	703	1	0	0	0	0	1	0	0	0	546	1101	38	1	4603	1	ALPK3	15	85403008	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1875197	85403008	17128384	738	43796											
AGBL1	123624	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	86807816	86807816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	86807816	G	A	86807816	3	1	703	1	0	0	0	0	1	0	0	0	375	1319	46	2	1310	2	AGBL1	15	86807816	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1404808	86807816	15723576	739	43797											
NTRK3	4916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	88420245	88420245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	88420245	C	T	88420245	3	4	703	1	0	0	0	0	1	0	0	0	10715	652	23	1	82	1	NTRK3	15	88420245	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1612429	88420245	14111147	740	43798											
IGF1R	3480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	99454671	99454671	+	Splice_Site	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	99454671	G	A	99454671	5	1	703	1	0	0	0	0	0	0	1	0	7578	1159	40	1	1616	1	IGF1R	15	99454671	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	11034426	99454671	3076721	741	43799											
OR4F15	390649	broad.mit.edu	37	15	102359272	102359272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	102359272	A	G	102359272	3	3	703	1	0	0	0	0	1	0	0	0	11068	247	9	3	885	3	OR4F15	15	102359272	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2904601	102359272	172120	742	43800											
RHBDL1	9028	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	727990	727990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	727990	G	A	727990	3	1	703	1	0	0	0	0	1	0	0	0	13334	1087	38	1	1281	1	RHBDL1	16	727990	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		727990	89626763	743	43801											
MSLN	10232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	818456	818456	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	818456	G	A	818456	2	1	703	1	0	0	0	0	0	0	0	1	9888	1103	39	1		1	MSLN	16	818456	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	90466	818456	89536297	744	43802											
TPSAB1	7177	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	16	1291624	1291624	+	Silent	SNP	C	C	G	rs1064782		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	1291624	C	G	1291624	2	3	703	1	0	0	0	0	0	0	0	1	16435	610	22	4		4	TPSAB1	16	1291624	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	473168	1291624	89063129	745	43803											
TPSD1	23430	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	1306310	1306311	+	Silent	DNP	GC	GC	AT	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	AT	1306311	GC	AT	1306310	2	1	703	1	0	0	0	0	0	0	0	1	16437	971	34	2		2	TPSD1	16	1306310	Silent	DNP	GC	TCGA-KN-8428-01A-11D-2310-10	14686	1306310	89048443	746	43804											
TPSD1	23430	ucsc.edu;mdanderson.org	37	16	1306954	1306954	+	Silent	SNP	C	C	G	rs61729110	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	1306954	C	G	1306954	2	3	703	1	0	0	0	0	0	0	0	1	16437	639	23	4		4	TPSD1	16	1306954	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	644	1306954	89047799	747	43805	601	2									
TPSD1	23430	ucsc.edu;bcgsc.ca	37	16	1306961	1306961	+	Missense_Mutation	SNP	A	A	G	rs139077060		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	1306961	A	G	1306961	3	3	703	1	0	0	0	0	1	0	0	0	16437	217	8	3	428	3	TPSD1	16	1306961	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	7	1306961	89047792	748	43806	601	2									
IFT140	9742	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	16	1574679	1574679	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1574679	G	A	1574679	2	1	703	1	0	0	0	0	0	0	0	1	7563	1136	40	1		1	IFT140	16	1574679	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	267718	1574679	88780074	749	43807											
IFT140	9742	broad.mit.edu	37	16	1612076	1612076	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1612076	G	A	1612076	2	1	703	1	0	0	0	0	0	0	0	1	7563	1136	40	1		1	IFT140	16	1612076	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	37397	1612076	88742677	750	43808											
TBL3	10607	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	2026870	2026870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	2026870	C	T	2026870	3	4	703	1	0	0	0	0	1	0	0	0	15655	739	26	2	1402	2	TBL3	16	2026870	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	414794	2026870	88327883	751	43809											
NTHL1	4913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	2093638	2093638	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	2093638	C	T	2093638	2	4	703	1	0	0	0	0	0	0	0	1	10705	755	27	1		1	NTHL1	16	2093638	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	66768	2093638	88261115	752	43810											
TRAF7	84231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	2226329	2226329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	2226329	G	A	2226329	3	1	703	1	0	0	0	0	1	0	0	0	16458	1087	38	1	2016	1	TRAF7	16	2226329	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	132691	2226329	88128424	753	43811											
E4F1	1877	mdanderson.org	37	16	2282184	2282184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	2282184	T	C	2282184	3	2	703	1	0	0	0	0	1	0	0	0	4876	1435	50	3	442	3	E4F1	16	2282184	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	55855	2282184	88072569	754	43812											
CEMP1	752014	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	2580968	2580968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	2580968	C	T	2580968	3	4	703	1	0	0	0	0	1	0	0	0	3226	739	26	2	640	2	CEMP1	16	2580968	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	298784	2580968	87773785	755	43813											
ZNF263	10127	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	16	3334016	3334016	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	3334016	C	T	3334016	2	4	703	1	0	0	0	0	0	0	0	1	17815	747	26	2		2	ZNF263	16	3334016	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	753048	3334016	87020737	756	43814											
PPL	5493	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	4934370	4934370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	4934370	G	A	4934370	3	1	703	1	0	0	0	0	1	0	0	0	12344	1087	38	1	988	1	PPL	16	4934370	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1600354	4934370	85420383	757	43815											
PPL	5493	broad.mit.edu;mdanderson.org	37	16	4940317	4940317	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	4940317	G	A	4940317	2	1	703	1	0	0	0	0	0	0	0	1	12344	1078	38	1		1	PPL	16	4940317	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5947	4940317	85414436	758	43816											
ALG1	56052	mdanderson.org	37	16	5129069	5129069	+	Silent	SNP	C	C	T	rs144029725	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	5129069	C	T	5129069	2	4	703	1	0	0	0	0	0	0	0	1	510	535	19	1		1	ALG1	16	5129069	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	188752	5129069	85225684	759	43817											
KIAA0430	9665	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	15711251	15711251	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	15711251	G	A	15711251	2	1	703	1	0	0	0	0	0	0	0	1	8184	1136	40	1		1	KIAA0430	16	15711251	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10582182	15711251	74643502	760	43818											
MYH11	4629	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	16	15818057	15818057	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	15818057	G	A	15818057	2	1	703	1	0	0	0	0	0	0	0	1	10038	1045	37	1		1	MYH11	16	15818057	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	106806	15818057	74536696	761	43819											
ITPRIPL2	162073	hgsc.bcm.edu;ucsc.edu	37	16	19126839	19126839	+	Silent	SNP	A	A	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	19126839	A	C	19126839	2	2	703	1	0	0	0	0	0	0	0	1	7932	146	6	5		5	ITPRIPL2	16	19126839	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3308782	19126839	71227914	762	43820											
SYT17	51760	broad.mit.edu;mdanderson.org	37	16	19236099	19236099	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	19236099	T	C	19236099	2	2	703	1	0	0	0	0	0	0	0	1	15485	1461	51	3		3	SYT17	16	19236099	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	109260	19236099	71118654	763	43821											
UMOD	7369	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	20360337	20360337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	20360337	C	T	20360337	3	4	703	1	0	0	0	0	1	0	0	0	16991	893	31	1	1672	1	UMOD	16	20360337	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1124238	20360337	69994416	764	43822											
DCUN1D3	123879	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	20873571	20873571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	20873571	C	T	20873571	3	4	703	1	0	0	0	0	1	0	0	0	4317	768	27	1	632	1	DCUN1D3	16	20873571	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	513234	20873571	69481182	765	43823											
DNAH3	55567	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	20996802	20996802	+	Missense_Mutation	SNP	C	C	T	rs200916697		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	20996802	C	T	20996802	3	4	703	1	0	0	0	0	1	0	0	0	4605	536	19	1	5147	1	DNAH3	16	20996802	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	123231	20996802	69357951	766	43824											
OTOA	146183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	21734300	21734300	+	Splice_Site	SNP	G	G	A	rs148690740		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	21734300	G	A	21734300	5	1	703	1	0	0	0	0	0	0	1	0	11309	1159	40	1	1993	1	OTOA	16	21734300	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	737498	21734300	68620453	767	43825											
UQCRC2	7385	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	21968871	21968871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	21968871	G	A	21968871	3	1	703	1	0	0	0	0	1	0	0	0	17032	1145	40	1	261	1	UQCRC2	16	21968871	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	234571	21968871	68385882	768	43826											
ERN2	10595	mdanderson.org	37	16	23702743	23702743	+	Missense_Mutation	SNP	C	C	T	rs144279415		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	23702743	C	T	23702743	3	4	703	1	0	0	0	0	1	0	0	0	5240	536	19	1	412	1	ERN2	16	23702743	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1733872	23702743	66652010	769	43827											
CHP2	63928	broad.mit.edu	37	16	23767738	23767738	+	Missense_Mutation	SNP	G	G	A	rs79455352	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	23767738	G	A	23767738	3	1	703	1	0	0	0	0	1	0	0	0	3369	1058	37	1	400	1	CHP2	16	23767738	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	64995	23767738	66587015	770	43828											
PRKCB	5579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	23999859	23999859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	23999859	A	G	23999859	3	3	703	1	0	0	0	0	1	0	0	0	12518	217	8	3	246	3	PRKCB	16	23999859	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	232121	23999859	66354894	771	43829											
SULT1A2	6799	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	16	28603675	28603675	+	Silent	SNP	C	C	T	rs141569114	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	28603675	C	T	28603675	2	4	703	1	0	0	0	0	0	0	0	1	15385	523	19	1		1	SULT1A2	16	28603675	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4603816	28603675	61751078	772	43830											
ASPHD1	253982	broad.mit.edu	37	16	29917204	29917204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	29917204	G	A	29917204	3	1	703	1	0	0	0	0	1	0	0	0	1054	1087	38	1	1169	1	ASPHD1	16	29917204	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1313529	29917204	60437549	773	43831											
TBX6	6911	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	30097724	30097724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	30097724	C	T	30097724	3	4	703	1	0	0	0	0	1	0	0	0	15674	768	27	1	181	1	TBX6	16	30097724	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	180520	30097724	60257029	774	43832											
SRCAP	10847	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	16	30748499	30748499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	30748499	C	T	30748499	3	4	703	1	0	0	0	0	1	0	0	0	15147	643	23	1	7264	1	SRCAP	16	30748499	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	650775	30748499	59606254	775	43833											
RNF40	9810	broad.mit.edu;mdanderson.org;bcgsc.ca	37	16	30777565	30777565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	30777565	G	A	30777565	3	1	703	1	0	0	0	0	1	0	0	0	13506	1059	37	1	1105	1	RNF40	16	30777565	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	29066	30777565	59577188	776	43834											
ZNF646	9726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	31090347	31090347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	31090347	G	A	31090347	3	1	703	1	0	0	0	0	1	0	0	0	18074	1087	38	1	2704	1	ZNF646	16	31090347	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	312782	31090347	59264406	777	43835											
ZNF423	23090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	49671194	49671194	+	Silent	SNP	G	G	A	rs151294188	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49671194	G	A	49671194	2	1	703	1	0	0	0	0	0	0	0	1	17910	1078	38	1		1	ZNF423	16	49671194	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	18580847	49671194	40683559	778	43836											
SALL1	6299	broad.mit.edu	37	16	51173805	51173805	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	51173805	C	T	51173805	2	4	703	1	0	0	0	0	0	0	0	1	13823	871	31	1		1	SALL1	16	51173805	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1502611	51173805	39180948	779	43837											
IRX6	79190	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	55360358	55360358	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	55360358	C	T	55360358	2	4	703	1	0	0	0	0	0	0	0	1	7855	547	19	1		1	IRX6	16	55360358	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4186553	55360358	34994395	780	43838											
SLC6A2	6530	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	55690630	55690630	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	55690630	G	A	55690630	2	1	703	1	0	0	0	0	0	0	0	1	14696	1074	38	1		1	SLC6A2	16	55690630	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	330272	55690630	34664123	781	43839											
FAM192A	80011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	57188284	57188284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	57188284	G	A	57188284	3	1	703	1	0	0	0	0	1	0	0	0	5527	1294	45	2	85	2	FAM192A	16	57188284	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1497654	57188284	33166469	782	43840											
SLC12A4	6560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	67980419	67980419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	67980419	G	A	67980419	3	1	703	1	0	0	0	0	1	0	0	0	14398	1086	38	1	926	1	SLC12A4	16	67980419	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10792135	67980419	22374334	783	43841											
PDPR	55066	broad.mit.edu	37	16	70164360	70164360	+	Missense_Mutation	SNP	T	T	A	rs201953730		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	70164360	T	A	70164360	3	1	703	1	0	0	0	0	1	0	0	0	11696	1461	51	5	660	5	PDPR	16	70164360	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	2183941	70164360	20190393	784	43842											
TAT	6898	broad.mit.edu	37	16	71602619	71602619	+	Missense_Mutation	SNP	C	C	T	rs137946175	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	71602619	C	T	71602619	3	4	703	1	0	0	0	0	1	0	0	0	15602	797	28	2	153	2	TAT	16	71602619	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1438259	71602619	18752134	785	43843											
ZFHX3	463	broad.mit.edu	37	16	72822644	72822644	+	Silent	SNP	C	C	T	rs138129897	byfrequency;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	72822644	C	T	72822644	2	4	703	1	0	0	0	0	0	0	0	1	17646	755	27	1		1	ZFHX3	16	72822644	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1220025	72822644	17532109	786	43844											
MON1B	22879	broad.mit.edu	37	16	77228770	77228770	+	Silent	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	77228770	C	A	77228770	2	1	703	1	0	0	0	0	0	0	0	1	9706	668	24	4		4	MON1B	16	77228770	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4406126	77228770	13125983	787	43845											
WFDC1	58189	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	84353088	84353088	+	Missense_Mutation	SNP	C	C	T	rs145066295		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	84353088	C	T	84353088	3	4	703	1	0	0	0	0	1	0	0	0	17358	893	31	1	487	1	WFDC1	16	84353088	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7124318	84353088	6001665	788	43846											
USP10	9100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	84778426	84778426	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	84778426	C	T	84778426	2	4	703	1	0	0	0	0	0	0	0	1	17053	874	31	1		1	USP10	16	84778426	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	425338	84778426	5576327	789	43847											
ACSF3	197322	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	16	89169104	89169104	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	89169104	G	A	89169104	2	1	703	1	0	0	0	0	0	0	0	1	176	1074	38	1		1	ACSF3	16	89169104	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4390678	89169104	1185649	790	43848											
DEF8	54849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	90020686	90020686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	90020686	G	A	90020686	3	1	703	1	0	0	0	0	1	0	0	0	4389	1145	40	1	215	1	DEF8	16	90020686	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	851582	90020686	334067	791	43849											
C16orf3	750	mdanderson.org	37	16	90095596	90095597	+	Missense_Mutation	DNP	AT	AT	GC	rs61118444	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	GC	90095597	AT	GC	90095596	3	3	703	1	0	0	0	0	1	0	0	0	1814	449	16	3	202	3	C16orf3	16	90095596	Missense_Mutation	DNP	AT	TCGA-KN-8428-01A-11D-2310-10	74910	90095596	259157	792	43850											
ITGAE	3682	hgsc.bcm.edu;ucsc.edu	37	17	3649159	3649159	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	3649159	G	A	3649159	2	1	703	1	0	0	0	0	0	0	0	1	7892	962	34	2		2	ITGAE	17	3649159	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10		3649159	77546051	793	43851											
ATP2A3	489	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	17	3839671	3839671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	3839671	G	A	3839671	3	1	703	1	0	0	0	0	1	0	0	0	1138	1145	40	1	820	1	ATP2A3	17	3839671	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	190512	3839671	77355539	794	43852											
SMTNL2	342527	hgsc.bcm.edu;ucsc.edu	37	17	4500239	4500239	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	4500239	C	T	4500239	2	4	703	1	0	0	0	0	0	0	0	1	14829	871	31	1		1	SMTNL2	17	4500239	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	660568	4500239	76694971	795	43853											
USP6	9098	mdanderson.org	37	17	5044784	5044784	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	5044784	T	C	5044784	2	2	703	1	0	0	0	0	0	0	0	1	17098	1403	49	3		3	USP6	17	5044784	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	544545	5044784	76150426	796	43854											
NLRP1	22861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	5436264	5436264	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	5436264	G	A	5436264	2	1	703	1	0	0	0	0	0	0	0	1	10478	1079	38	1		1	NLRP1	17	5436264	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	391480	5436264	75758946	797	43855											
SLC16A13	201232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	6941569	6941569	+	Missense_Mutation	SNP	G	G	A	rs147982952		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	6941569	G	A	6941569	3	1	703	1	0	0	0	0	1	0	0	0	14419	1145	40	1	452	1	SLC16A13	17	6941569	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1505305	6941569	74253641	798	43856											
NEURL4	84461	hgsc.bcm.edu;mdanderson.org	37	17	7228701	7228701	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	7228701	G	A	7228701	2	1	703	1	0	0	0	0	0	0	0	1	10354	1252	44	2		2	NEURL4	17	7228701	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	287132	7228701	73966509	799	43857											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	7578263	G	A	7578263	4	1	703	1	0	0	0	0	0	1	0	0	16393	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	349562	7578263	73616947	800	43858											
CHD3	1107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7814222	7814222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	7814222	G	A	7814222	3	1	703	1	0	0	0	0	1	0	0	0	3328	1087	38	1	6247	1	CHD3	17	7814222	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	235959	7814222	73380988	801	43859											
PER1	5187	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	8044491	8044491	+	Silent	SNP	G	G	A	rs199916672		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	8044491	G	A	8044491	2	1	703	1	0	0	0	0	0	0	0	1	11736	1074	38	1		1	PER1	17	8044491	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	230269	8044491	73150719	802	43860											
MYH13	8735	ucsc.edu;mdanderson.org	37	17	10267836	10267836	+	Silent	SNP	G	G	A	rs34042358	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	10267836	G	A	10267836	2	1	703	1	0	0	0	0	0	0	0	1	10039	1136	40	1		1	MYH13	17	10267836	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2223345	10267836	70927374	803	43861											
ELAC2	60528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	12896262	12896262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	12896262	C	T	12896262	3	4	703	1	0	0	0	0	1	0	0	0	5049	652	23	1	130	1	ELAC2	17	12896262	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2628426	12896262	68298948	804	43862											
MED9	55090	ucsc.edu	37	17	17380564	17380564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	17380564	A	G	17380564	3	3	703	1	0	0	0	0	1	0	0	0	9461	159	6	3	211	3	MED9	17	17380564	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	4484302	17380564	63814646	805	43863											
MYO15A	51168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	18052173	18052173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	18052173	C	T	18052173	3	4	703	1	0	0	0	0	1	0	0	0	10070	893	31	1	6985	1	MYO15A	17	18052173	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	671609	18052173	63143037	806	43864											
SLC5A10	125206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	18923133	18923133	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	18923133	C	T	18923133	2	4	703	1	0	0	0	0	0	0	0	1	14675	639	23	1		1	SLC5A10	17	18923133	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	870960	18923133	62272077	807	43865											
MYO18A	399687	broad.mit.edu	37	17	27423863	27423863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	27423863	C	T	27423863	3	4	703	1	0	0	0	0	1	0	0	0	10072	884	31	1	1923	1	MYO18A	17	27423863	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8500730	27423863	53771347	808	43866											
GIT1	28964	broad.mit.edu	37	17	27901911	27901911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	27901911	G	A	27901911	3	1	703	1	0	0	0	0	1	0	0	0	6403	1086	38	1	194	1	GIT1	17	27901911	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	478048	27901911	53293299	809	43867											
NF1	4763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	29653046	29653046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	29653046	T	C	29653046	3	2	703	1	0	0	0	0	1	0	0	0	10363	1580	55	3	5251	3	NF1	17	29653046	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1751135	29653046	51542164	810	43868											
GPR179	440435	broad.mit.edu;mdanderson.org;bcgsc.ca	37	17	36499408	36499408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	36499408	G	A	36499408	3	1	703	1	0	0	0	0	1	0	0	0	6681	1203	42	2	6882	2	GPR179	17	36499408	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6846362	36499408	44695802	811	43869											
SOCS7	30837	broad.mit.edu	37	17	36521270	36521270	+	Silent	SNP	G	G	A	rs149190855		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	36521270	G	A	36521270	2	1	703	1	0	0	0	0	0	0	0	1	14932	1074	38	1		1	SOCS7	17	36521270	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	21862	36521270	44673940	812	43870											
GRB7	2886	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	37900401	37900401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	37900401	C	T	37900401	3	4	703	1	0	0	0	0	1	0	0	0	6766	536	19	1	764	1	GRB7	17	37900401	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1379131	37900401	43294809	813	43871											
RAPGEFL1	51195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	38345215	38345215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	38345215	C	T	38345215	3	4	703	1	0	0	0	0	1	0	0	0	13062	643	23	1	323	1	RAPGEFL1	17	38345215	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	444814	38345215	42849995	814	43872											
RARA	5914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	38512460	38512460	+	Silent	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	38512460	G	T	38512460	2	4	703	1	0	0	0	0	0	0	0	1	13065	1103	39	4		4	RARA	17	38512460	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	167245	38512460	42682750	815	43873											
TMEM99	147184	hgsc.bcm.edu;bcgsc.ca	37	17	38990812	38990812	+	Missense_Mutation	SNP	C	C	T	rs189743949	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	38990812	C	T	38990812	3	4	703	1	0	0	0	0	1	0	0	0	16238	893	31	1	46	1	TMEM99	17	38990812	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	478352	38990812	42204398	816	43874											
KRTAP9-9	81870	broad.mit.edu;mdanderson.org	37	17	39411913	39411913	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	39411913	C	T	39411913	2	4	703	1	0	0	0	0	0	0	0	1	8584	726	26	2		2	KRTAP9-9	17	39411913	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	421101	39411913	41783297	817	43875											
KRT15	3866	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	39673348	39673348	+	Missense_Mutation	SNP	C	C	T	rs147023381		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	39673348	C	T	39673348	3	4	703	1	0	0	0	0	1	0	0	0	8459	884	31	1	830	1	KRT15	17	39673348	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	261435	39673348	41521862	818	43876											
KIF18B	146909	broad.mit.edu;mdanderson.org	37	17	43004364	43004364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	43004364	C	T	43004364	3	4	703	1	0	0	0	0	1	0	0	0	8288	536	19	1	210	1	KIF18B	17	43004364	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3331016	43004364	38190846	819	43877											
NOG	9241	broad.mit.edu;bcgsc.ca	37	17	54672235	54672235	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	54672235	G	A	54672235	4	1	703	1	0	0	0	0	0	1	0	0	10526	1183	41	2	653	2	NOG	17	54672235	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	11667871	54672235	26522975	820	43878											
TRIM25	7706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	54985879	54985879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	54985879	C	T	54985879	3	4	703	1	0	0	0	0	1	0	0	0	16511	652	23	1	1281	1	TRIM25	17	54985879	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	313644	54985879	26209331	821	43879											
OR4D2	124538	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	56247381	56247381	+	Missense_Mutation	SNP	G	G	A	rs142058863	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	56247381	G	A	56247381	3	1	703	1	0	0	0	0	1	0	0	0	11063	1087	38	1	367	1	OR4D2	17	56247381	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1261502	56247381	24947829	822	43880											
OR4D2	124538	broad.mit.edu;bcgsc.ca	37	17	56247407	56247407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	56247407	C	T	56247407	3	4	703	1	0	0	0	0	1	0	0	0	11063	652	23	1	393	1	OR4D2	17	56247407	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	26	56247407	24947803	823	43881											
MKS1	54903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	56290442	56290442	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	56290442	C	T	56290442	2	4	703	1	0	0	0	0	0	0	0	1	9616	639	23	1		1	MKS1	17	56290442	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	43035	56290442	24904768	824	43882											
SEPT4	5414	ucsc.edu;bcgsc.ca	37	17	56599003	56599003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	56599003	C	T	56599003	3	4	703	1	0	0	0	0	1	0	0	0	14079	652	23	1	536	1	SEPT4	17	56599003	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	308561	56599003	24596207	825	43883											
BCAS3	54828	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	17	59445725	59445725	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	59445725	C	T	59445725	2	4	703	1	0	0	0	0	0	0	0	1	1352	776	27	1		1	BCAS3	17	59445725	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2846722	59445725	21749485	826	43884											
TANC2	26115	broad.mit.edu	37	17	61497780	61497780	+	Silent	SNP	A	A	G	rs200208895		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	61497780	A	G	61497780	2	3	703	1	0	0	0	0	0	0	0	1	15557	272	10	3		3	TANC2	17	61497780	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2052055	61497780	19697430	827	43885											
TEX2	55852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	62291323	62291323	+	Silent	SNP	G	G	A	rs139320801		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	62291323	G	A	62291323	2	1	703	1	0	0	0	0	0	0	0	1	15793	1103	39	1		1	TEX2	17	62291323	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	793543	62291323	18903887	828	43886											
HELZ	9931	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	65134098	65134098	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	65134098	G	A	65134098	4	1	703	1	0	0	0	0	0	1	0	0	7056	1066	37	1	2974	1	HELZ	17	65134098	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2842775	65134098	16061112	829	43887											
KIF19	124602	mdanderson.org	37	17	72350412	72350412	+	Missense_Mutation	SNP	G	G	A	rs2271535	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	72350412	G	A	72350412	3	1	703	1	0	0	0	0	1	0	0	0	8289	1087	38	1	2490	1	KIF19	17	72350412	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7216314	72350412	8844798	830	43888											
RECQL5	9400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	73626346	73626346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	73626346	C	T	73626346	3	4	703	1	0	0	0	0	1	0	0	0	13216	652	23	1	1273	1	RECQL5	17	73626346	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1275934	73626346	7568864	831	43889											
RNF157	114804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	74157965	74157965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	74157965	G	A	74157965	3	1	703	1	0	0	0	0	1	0	0	0	13467	1145	40	1	1168	1	RNF157	17	74157965	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	531619	74157965	7037245	832	43890											
MGAT5B	146664	broad.mit.edu;bcgsc.ca	37	17	74901299	74901299	+	Missense_Mutation	SNP	G	G	A	rs199861646		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	74901299	G	A	74901299	3	1	703	1	0	0	0	0	1	0	0	0	9556	1116	39	1	866	1	MGAT5B	17	74901299	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	743334	74901299	6293911	833	43891											
SEPT9	10801	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	75471796	75471796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	75471796	C	T	75471796	3	4	703	1	0	0	0	0	1	0	0	0	14084	884	31	1	1016	1	SEPT9	17	75471796	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	570497	75471796	5723414	834	43892											
TNRC6C	57690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	76071339	76071339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	76071339	C	T	76071339	3	4	703	1	0	0	0	0	1	0	0	0	16354	652	23	1	3062	1	TNRC6C	17	76071339	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	599543	76071339	5123871	835	43893											
RNF213	57674	hgsc.bcm.edu;mdanderson.org	37	17	78318717	78318717	+	Silent	SNP	G	G	A	rs140158248	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	78318717	G	A	78318717	2	1	703	1	0	0	0	0	0	0	0	1	13490	1103	39	1		1	RNF213	17	78318717	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2247378	78318717	2876493	836	43894											
RNF213	57674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	78320904	78320904	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	78320904	C	T	78320904	2	4	703	1	0	0	0	0	0	0	0	1	13490	871	31	1		1	RNF213	17	78320904	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2187	78320904	2874306	837	43895											
SLC38A10	124565	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	79226231	79226231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	79226231	G	A	79226231	3	1	703	1	0	0	0	0	1	0	0	0	14615	1087	38	1	1944	1	SLC38A10	17	79226231	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	905327	79226231	1968979	838	43896											
C17orf70	80233	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	17	79512906	79512906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	79512906	C	T	79512906	3	4	703	1	0	0	0	0	1	0	0	0	1879	536	19	1	485	1	C17orf70	17	79512906	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	286675	79512906	1682304	839	43897											
HGS	9146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	79663491	79663491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	79663491	G	A	79663491	3	1	703	1	0	0	0	0	1	0	0	0	7094	1059	37	1	1560	1	HGS	17	79663491	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	150585	79663491	1531719	840	43898											
USP14	9097	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	198072	198072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	198072	C	T	198072	3	4	703	1	0	0	0	0	1	0	0	0	17057	768	27	1	735	1	USP14	18	198072	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		198072	77879176	841	43899											
THOC1	9984	broad.mit.edu;mdanderson.org	37	18	216576	216576	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	216576	G	A	216576	2	1	703	1	0	0	0	0	0	0	0	1	15876	1194	42	2		2	THOC1	18	216576	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	18504	216576	77860672	842	43900											
NDC80	10403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	2610781	2610781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	2610781	C	T	2610781	3	4	703	1	0	0	0	0	1	0	0	0	10249	536	19	1	1770	1	NDC80	18	2610781	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2394205	2610781	75466467	843	43901											
ROCK1	6093	broad.mit.edu;mdanderson.org	37	18	18533573	18533573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	18533573	G	A	18533573	3	1	703	1	0	0	0	0	1	0	0	0	13530	1115	39	1	45	1	ROCK1	18	18533573	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15922792	18533573	59543675	844	43902											
LAMA3	3909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	18	21474920	21474920	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	21474920	C	T	21474920	2	4	703	1	0	0	0	0	0	0	0	1	8614	755	27	1		1	LAMA3	18	21474920	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2941347	21474920	56602328	845	43903											
DSG4	147409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	28972125	28972125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	28972125	C	T	28972125	3	4	703	1	0	0	0	0	1	0	0	0	4781	739	26	2	857	2	DSG4	18	28972125	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7497205	28972125	49105123	846	43904											
TCEB3C	162699	broad.mit.edu	37	18	44554924	44554924	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	44554924	C	T	44554924	2	4	703	1	0	0	0	0	0	0	0	1	15695	813	29	2		2	TCEB3C	18	44554924	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	15582799	44554924	33522324	847	43905											
TCEB3B	51224	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	18	44561229	44561229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	44561229	G	T	44561229	3	4	703	1	0	0	0	0	1	0	0	0	15694	1000	35	4	1858	4	TCEB3B	18	44561229	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6305	44561229	33516019	848	43906											
ZBTB7C	201501	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	18	45567082	45567082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	45567082	C	T	45567082	3	4	703	1	0	0	0	0	1	0	0	0	17567	652	23	1	1470	1	ZBTB7C	18	45567082	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1005853	45567082	32510166	849	43907											
MYO5B	4645	mdanderson.org	37	18	47363927	47363927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	47363927	G	A	47363927	3	1	703	1	0	0	0	0	1	0	0	0	10086	1086	38	1	464	1	MYO5B	18	47363927	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1796845	47363927	30713321	850	43908											
WDR7	23335	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	18	54358459	54358459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	54358459	G	A	54358459	3	1	703	1	0	0	0	0	1	0	0	0	17332	1117	39	1	756	1	WDR7	18	54358459	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6994532	54358459	23718789	851	43909											
WDR7	23335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	54591323	54591323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	54591323	G	A	54591323	3	1	703	1	0	0	0	0	1	0	0	0	17332	1059	37	1	3779	1	WDR7	18	54591323	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	232864	54591323	23485925	852	43910											
ALPK2	115701	broad.mit.edu	37	18	56191246	56191246	+	Silent	SNP	C	C	T	rs145864025	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	56191246	C	T	56191246	2	4	703	1	0	0	0	0	0	0	0	1	545	871	31	1		1	ALPK2	18	56191246	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1599923	56191246	21886002	853	43911											
DOK6	220164	bcgsc.ca	37	18	67406218	67406218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	67406218	A	G	67406218	3	3	703	1	0	0	0	0	1	0	0	0	4703	246	9	3	639	3	DOK6	18	67406218	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	11214972	67406218	10671030	854	43912											
ATP9B	374868	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	76886295	76886295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	76886295	G	A	76886295	3	1	703	1	0	0	0	0	1	0	0	0	1199	1116	39	1	605	1	ATP9B	18	76886295	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9480077	76886295	1190953	855	43913											
NFATC1	4772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	77170445	77170445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	77170445	C	T	77170445	3	4	703	1	0	0	0	0	1	0	0	0	10368	652	23	1	268	1	NFATC1	18	77170445	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	284150	77170445	906803	856	43914											
BSG	682	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	579590	579590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	579590	A	G	579590	3	3	703	1	0	0	0	0	1	0	0	0	1531	159	6	3	552	3	BSG	19	579590	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10		579590	58549393	857	43915											
SBNO2	22904	hgsc.bcm.edu;mdanderson.org	37	19	1116900	1116900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1116900	G	A	1116900	3	1	703	1	0	0	0	0	1	0	0	0	13876	1145	40	1	2438	1	SBNO2	19	1116900	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	537310	1116900	58012083	858	43916											
SBNO2	22904	mdanderson.org	37	19	1116911	1116911	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	1116911	C	T	1116911	2	4	703	1	0	0	0	0	0	0	0	1	13876	726	26	2		2	SBNO2	19	1116911	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11	1116911	58012072	859	43917											
TCF3	6929	hgsc.bcm.edu	37	19	1621856	1621856	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1621856	G	A	1621856	2	1	703	1	0	0	0	0	0	0	0	1	15706	1078	38	1		1	TCF3	19	1621856	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	504945	1621856	57507127	860	43918											
FAM108A1	81926	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	1881247	1881247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	1881247	C	T	1881247	3	4	703	1	0	0	0	0	1	0	0	0	5395	536	19	1	786	1	FAM108A1	19	1881247	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	259391	1881247	57247736	861	43919											
AMH	268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	2249496	2249496	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	2249496	C	T	2249496	2	4	703	1	0	0	0	0	0	0	0	1	572	747	26	2		2	AMH	19	2249496	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	368249	2249496	56879487	862	43920											
TMPRSS9	360200	hgsc.bcm.edu;mdanderson.org	37	19	2425067	2425067	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	2425067	C	T	2425067	2	4	703	1	0	0	0	0	0	0	0	1	16265	796	28	2		2	TMPRSS9	19	2425067	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	175571	2425067	56703916	863	43921											
SGTA	6449	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	2757763	2757763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	2757763	G	A	2757763	3	1	703	1	0	0	0	0	1	0	0	0	14238	1059	37	1	194	1	SGTA	19	2757763	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	332696	2757763	56371220	864	43922											
S1PR4	8698	broad.mit.edu	37	19	3179323	3179323	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	3179323	T	G	3179323	3	3	703	1	0	0	0	0	1	0	0	0	13809	1464	51	5	535	5	S1PR4	19	3179323	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	421560	3179323	55949660	865	43923											
TBXA2R	6915	hgsc.bcm.edu	37	19	3595775	3595775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	3595775	C	T	3595775	3	4	703	1	0	0	0	0	1	0	0	0	15675	536	19	1	337	1	TBXA2R	19	3595775	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	416452	3595775	55533208	866	43924											
CHAF1A	10036	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	4409549	4409549	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	4409549	G	A	4409549	2	1	703	1	0	0	0	0	0	0	0	1	3313	1074	38	1		1	CHAF1A	19	4409549	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	813774	4409549	54719434	867	43925											
PLIN4	729359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	4511019	4511019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	4511019	C	T	4511019	3	4	703	1	0	0	0	0	1	0	0	0	12099	768	27	1	1178	1	PLIN4	19	4511019	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	101470	4511019	54617964	868	43926											
LONP1	9361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	5707746	5707746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	5707746	C	T	5707746	3	4	703	1	0	0	0	0	1	0	0	0	8899	893	31	1	1907	1	LONP1	19	5707746	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1196727	5707746	53421237	869	43927											
FUT6	2528	broad.mit.edu	37	19	5832569	5832569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	5832569	G	T	5832569	3	4	703	1	0	0	0	0	1	0	0	0	6115	991	35	4	1073	4	FUT6	19	5832569	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	124823	5832569	53296414	870	43928											
GPR108	56927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	6733232	6733232	+	Silent	SNP	G	G	A	rs77003966	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	6733232	G	A	6733232	2	1	703	1	0	0	0	0	0	0	0	1	6631	1103	39	1		1	GPR108	19	6733232	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	900663	6733232	52395751	871	43929											
ARHGEF18	23370	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	7505040	7505040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	7505040	C	T	7505040	3	4	703	1	0	0	0	0	1	0	0	0	901	652	23	1	216	1	ARHGEF18	19	7505040	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	771808	7505040	51623943	872	43930											
ARHGEF18	23370	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	7521290	7521290	+	Splice_Site	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	7521290	G	A	7521290	5	1	703	1	0	0	0	0	0	0	1	0	901	1275	44	2	1648	2	ARHGEF18	19	7521290	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	16250	7521290	51607693	873	43931											
PNPLA6	10908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	7606949	7606949	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	7606949	C	T	7606949	2	4	703	1	0	0	0	0	0	0	0	1	12176	903	32	2		2	PNPLA6	19	7606949	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	85659	7606949	51522034	874	43932											
FBN3	84467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	8201286	8201286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	8201286	C	T	8201286	3	4	703	1	0	0	0	0	1	0	0	0	5711	768	27	1	7314	1	FBN3	19	8201286	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	594337	8201286	50927697	875	43933											
FBN3	84467	broad.mit.edu	37	19	8209801	8209801	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	8209801	G	A	8209801	2	1	703	1	0	0	0	0	0	0	0	1	5711	1079	38	1		1	FBN3	19	8209801	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8515	8209801	50919182	876	43934											
MYO1F	4542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	8592315	8592315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	8592315	C	T	8592315	3	4	703	1	0	0	0	0	1	0	0	0	10080	884	31	1	943	1	MYO1F	19	8592315	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	382514	8592315	50536668	877	43935											
OLFM2	93145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	9967485	9967485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	9967485	G	A	9967485	3	1	703	1	0	0	0	0	1	0	0	0	10860	1115	39	1	687	1	OLFM2	19	9967485	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1375170	9967485	49161498	878	43936											
DNMT1	1786	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	10246467	10246467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	10246467	T	C	10246467	3	2	703	1	0	0	0	0	1	0	0	0	4677	1580	55	3	192	3	DNMT1	19	10246467	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	278982	10246467	48882516	879	43937											
ICAM4	3386	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	10398019	10398019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	10398019	G	A	10398019	3	1	703	1	0	0	0	0	1	0	0	0	7489	1087	38	1	333	1	ICAM4	19	10398019	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	151552	10398019	48730964	880	43938											
TYK2	7297	ucsc.edu;mdanderson.org;bcgsc.ca	37	19	10477123	10477123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	10477123	A	G	10477123	3	3	703	1	0	0	0	0	1	0	0	0	16822	333	12	3	3044	3	TYK2	19	10477123	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	79104	10477123	48651860	881	43939											
AP1M2	10053	ucsc.edu;mdanderson.org;bcgsc.ca	37	19	10692022	10692022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	10692022	A	G	10692022	3	3	703	1	0	0	0	0	1	0	0	0	735	333	12	3	706	3	AP1M2	19	10692022	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	214899	10692022	48436961	882	43940											
ILF3	3609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	10794618	10794618	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	10794618	C	T	10794618	2	4	703	1	0	0	0	0	0	0	0	1	7719	547	19	1		1	ILF3	19	10794618	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	102596	10794618	48334365	883	43941											
QTRT1	81890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	10818003	10818003	+	Silent	SNP	C	C	T	rs151104617		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	10818003	C	T	10818003	2	4	703	1	0	0	0	0	0	0	0	1	12898	535	19	1		1	QTRT1	19	10818003	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	23385	10818003	48310980	884	43942											
TMEM205	374882	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	11453630	11453630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	11453630	C	T	11453630	3	4	703	1	0	0	0	0	1	0	0	0	16142	884	31	1	142	1	TMEM205	19	11453630	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	635627	11453630	47675353	885	43943											
ELAVL3	1995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	11568980	11568980	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	11568980	C	T	11568980	2	4	703	1	0	0	0	0	0	0	0	1	5053	871	31	1		1	ELAVL3	19	11568980	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	115350	11568980	47560003	886	43944											
ZNF653	115950	ucsc.edu;mdanderson.org;bcgsc.ca	37	19	11598527	11598527	+	Missense_Mutation	SNP	C	C	T	rs140179197	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	11598527	C	T	11598527	3	4	703	1	0	0	0	0	1	0	0	0	18078	536	19	1	1120	1	ZNF653	19	11598527	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	29547	11598527	47530456	887	43945											
ZNF441	126068	broad.mit.edu	37	19	11891522	11891522	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	11891522	T	G	11891522	3	3	703	1	0	0	0	0	1	0	0	0	17926	1609	56	5	897	5	ZNF441	19	11891522	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	292995	11891522	47237461	888	43946											
ZNF441	126068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	11892622	11892622	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	11892622	T	C	11892622	2	2	703	1	0	0	0	0	0	0	0	1	17926	1461	51	3		3	ZNF441	19	11892622	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1100	11892622	47236361	889	43947											
ZNF878	729747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	12155144	12155144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	12155144	C	T	12155144	3	4	703	1	0	0	0	0	1	0	0	0	18208	835	29	2	527	2	ZNF878	19	12155144	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	262522	12155144	46973839	890	43948											
ZNF799	90576	bcgsc.ca	37	19	12502787	12502787	+	Missense_Mutation	SNP	G	G	A	rs12974755	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	12502787	G	A	12502787	3	1	703	1	0	0	0	0	1	0	0	0	18178	1145	40	1	1510	1	ZNF799	19	12502787	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	347643	12502787	46626196	891	43949											
ZNF709	163051	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	12574914	12574914	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	12574914	G	A	12574914	4	1	703	1	0	0	0	0	0	1	0	0	18125	1153	40	1	107	1	ZNF709	19	12574914	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	72127	12574914	46554069	892	43950											
TNPO2	30000	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	12812988	12812988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	12812988	C	T	12812988	3	4	703	1	0	0	0	0	1	0	0	0	16348	768	27	1	400	1	TNPO2	19	12812988	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	238074	12812988	46315995	893	43951											
BEST2	54831	broad.mit.edu	37	19	12865478	12865478	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	12865478	C	T	12865478	2	4	703	1	0	0	0	0	0	0	0	1	1405	755	27	1		1	BEST2	19	12865478	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	52490	12865478	46263505	894	43952											
NFIX	4784	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	13183866	13183866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	13183866	G	A	13183866	3	1	703	1	0	0	0	0	1	0	0	0	10381	1117	39	1	575	1	NFIX	19	13183866	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	318388	13183866	45945117	895	43953											
NFIX	4784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	13186460	13186460	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	13186460	C	T	13186460	2	4	703	1	0	0	0	0	0	0	0	1	10381	767	27	1		1	NFIX	19	13186460	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2594	13186460	45942523	896	43954											
NACC1	112939	broad.mit.edu;bcgsc.ca	37	19	13248350	13248350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	13248350	C	T	13248350	3	4	703	1	0	0	0	0	1	0	0	0	10142	875	31	1	1299	1	NACC1	19	13248350	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	61890	13248350	45880633	897	43955											
ZSWIM4	65249	mdanderson.org	37	19	13936443	13936443	+	Silent	SNP	G	G	A	rs202144110		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	13936443	G	A	13936443	2	1	703	1	0	0	0	0	0	0	0	1	18255	1074	38	1		1	ZSWIM4	19	13936443	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	688093	13936443	45192540	898	43956											
LPHN1	22859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	14268815	14268815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	14268815	C	T	14268815	3	4	703	1	0	0	0	0	1	0	0	0	8922	536	19	1	2039	1	LPHN1	19	14268815	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	332372	14268815	44860168	899	43957											
LPHN1	22859	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	14273936	14273936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	14273936	C	T	14273936	3	4	703	1	0	0	0	0	1	0	0	0	8922	768	27	1	3808	1	LPHN1	19	14273936	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5121	14273936	44855047	900	43958											
SLC1A6	6511	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	15063793	15063793	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	15063793	C	T	15063793	2	4	703	1	0	0	0	0	0	0	0	1	14449	639	23	1		1	SLC1A6	19	15063793	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	789857	15063793	44065190	901	43959											
NOTCH3	4854	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	15297722	15297722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	15297722	G	A	15297722	3	1	703	1	0	0	0	0	1	0	0	0	10557	1116	39	1	5135	1	NOTCH3	19	15297722	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	233929	15297722	43831261	902	43960											
CYP4F3	4051	broad.mit.edu	37	19	15752327	15752327	+	Silent	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	15752327	C	A	15752327	2	1	703	1	0	0	0	0	0	0	0	1	4192	845	30	4		4	CYP4F3	19	15752327	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	454605	15752327	43376656	903	43961											
AP1M1	8907	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	16345014	16345014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	16345014	G	A	16345014	3	1	703	1	0	0	0	0	1	0	0	0	734	1087	38	1	1260	1	AP1M1	19	16345014	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	592687	16345014	42783969	904	43962											
SIN3B	23309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	16976291	16976291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	16976291	G	A	16976291	3	1	703	1	0	0	0	0	1	0	0	0	14339	1116	39	1	1596	1	SIN3B	19	16976291	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	631277	16976291	42152692	905	43963											
HAPLN4	404037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	19369385	19369385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	19369385	C	T	19369385	3	4	703	1	0	0	0	0	1	0	0	0	6964	768	27	1	452	1	HAPLN4	19	19369385	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2393094	19369385	39759598	906	43964											
ZNF737	100129842	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	20735292	20735292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	20735292	G	A	20735292	3	1	703	1	0	0	0	0	1	0	0	0	18138	1203	42	2	1403	2	ZNF737	19	20735292	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1365907	20735292	38393691	907	43965											
ANKRD27	84079	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	33137475	33137475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	33137475	G	A	33137475	3	1	703	1	0	0	0	0	1	0	0	0	655	1203	42	2	2996	2	ANKRD27	19	33137475	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12402183	33137475	25991508	908	43966											
WDR88	126248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	33666433	33666433	+	Silent	SNP	G	G	A	rs145406953		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	33666433	G	A	33666433	2	1	703	1	0	0	0	0	0	0	0	1	17347	1103	39	1		1	WDR88	19	33666433	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	528958	33666433	25462550	909	43967											
WTIP	126374	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	34984440	34984440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	34984440	G	A	34984440	3	1	703	1	0	0	0	0	1	0	0	0	17422	1116	39	1	962	1	WTIP	19	34984440	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1318007	34984440	24144543	910	43968											
FFAR2	2867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	35941487	35941487	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	35941487	C	T	35941487	2	4	703	1	0	0	0	0	0	0	0	1	5835	796	28	2		2	FFAR2	19	35941487	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	957047	35941487	23187496	911	43969											
RBM42	79171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	36120479	36120479	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	36120479	G	A	36120479	2	1	703	1	0	0	0	0	0	0	0	1	13149	1103	39	1		1	RBM42	19	36120479	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	178992	36120479	23008504	912	43970											
MLL4	8085	broad.mit.edu	37	19	36210431	36210431	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	36210431	C	T	36210431	4	4	703	1	0	0	0	0	0	1	0	0	9630	644	23	1	430	1	MLL4	19	36210431	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	89952	36210431	22918552	913	43971											
MLL4	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	36210898	36210898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	36210898	C	T	36210898	3	4	703	1	0	0	0	0	1	0	0	0	9630	643	23	1	659	1	MLL4	19	36210898	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	467	36210898	22918085	914	43972											
C19orf55	148137	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	36255795	36255795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	36255795	C	T	36255795	3	4	703	1	0	0	0	0	1	0	0	0	1939	536	19	1	606	1	C19orf55	19	36255795	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	44897	36255795	22873188	915	43973											
ARHGAP33	115703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	36279135	36279135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	36279135	C	T	36279135	3	4	703	1	0	0	0	0	1	0	0	0	882	652	23	1	3750	1	ARHGAP33	19	36279135	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	23340	36279135	22849848	916	43974											
KIRREL2	84063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	36349605	36349605	+	Splice_Site	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	36349605	G	A	36349605	5	1	703	1	0	0	0	0	0	0	1	0	8332	1043	36	2	375	2	KIRREL2	19	36349605	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	70470	36349605	22779378	917	43975											
WDR62	284403	broad.mit.edu	37	19	36592604	36592604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	36592604	G	A	36592604	3	1	703	1	0	0	0	0	1	0	0	0	17325	1087	38	1	3108	1	WDR62	19	36592604	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	242999	36592604	22536379	918	43976											
ZNF569	148266	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	37916858	37916858	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	37916858	C	T	37916858	2	4	703	1	0	0	0	0	0	0	0	1	18012	523	19	1		1	ZNF569	19	37916858	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1324254	37916858	21212125	919	43977											
RASGRP4	115727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	38901988	38901988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	38901988	G	A	38901988	3	1	703	1	0	0	0	0	1	0	0	0	13090	1057	37	1	323	1	RASGRP4	19	38901988	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	985130	38901988	20226995	920	43978											
MAP4K1	11184	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	39090577	39090577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	39090577	T	C	39090577	3	2	703	1	0	0	0	0	1	0	0	0	9266	1464	51	3	950	3	MAP4K1	19	39090577	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	188589	39090577	20038406	921	43979											
ZFP36	7538	bcgsc.ca	37	19	39899072	39899072	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	-	39899072	C	-	39899072	7	5	703	1	0	1	0	1	0	0	0	0	17657	610	22	0	720	0	ZFP36	19	39899072	Frame_Shift_Del	DEL	C	TCGA-KN-8428-01A-11D-2310-10	808495	39899072	19229911	922	43980											
FCGBP	8857	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	19	40366434	40366434	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	40366434	G	A	40366434	2	1	703	1	0	0	0	0	0	0	0	1	5785	1074	38	1		1	FCGBP	19	40366434	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	467362	40366434	18762549	923	43981											
FCGBP	8857	broad.mit.edu;mdanderson.org	37	19	40368741	40368741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	40368741	C	T	40368741	3	4	703	1	0	0	0	0	1	0	0	0	5785	536	19	1	3646	1	FCGBP	19	40368741	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2307	40368741	18760242	924	43982											
CNTD2	79935	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	40730407	40730407	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	40730407	G	A	40730407	2	1	703	1	0	0	0	0	0	0	0	1	3638	1079	38	1		1	CNTD2	19	40730407	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	361666	40730407	18398576	925	43983											
SPTBN4	57731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	41072217	41072217	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	41072217	G	A	41072217	2	1	703	1	0	0	0	0	0	0	0	1	15133	1103	39	1		1	SPTBN4	19	41072217	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	341810	41072217	18056766	926	43984											
ADCK4	79934	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	41198899	41198899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	41198899	T	C	41198899	3	2	703	1	0	0	0	0	1	0	0	0	290	1580	55	3	389	3	ADCK4	19	41198899	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	126682	41198899	17930084	927	43985											
POU2F2	5452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	42600329	42600329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42600329	G	A	42600329	3	1	703	1	0	0	0	0	1	0	0	0	12279	1203	42	2	899	2	POU2F2	19	42600329	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1401430	42600329	16528654	928	43986											
ZNF526	116115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	42729973	42729973	+	Missense_Mutation	SNP	G	G	A	rs149858475		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42729973	G	A	42729973	3	1	703	1	0	0	0	0	1	0	0	0	17979	1087	38	1	1420	1	ZNF526	19	42729973	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	129644	42729973	16399010	929	43987											
ERF	2077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	42754628	42754628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42754628	G	A	42754628	3	1	703	1	0	0	0	0	1	0	0	0	5223	1086	38	1	1546	1	ERF	19	42754628	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	24655	42754628	16374355	930	43988											
MEGF8	1954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	42861000	42861000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42861000	G	A	42861000	3	1	703	1	0	0	0	0	1	0	0	0	9470	1087	38	1	4598	1	MEGF8	19	42861000	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	106372	42861000	16267983	931	43989											
LYPD3	27076	hgsc.bcm.edu;ucsc.edu	37	19	43965542	43965542	+	Silent	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	43965542	T	C	43965542	2	2	703	1	0	0	0	0	0	0	0	1	9118	1567	55	3		3	LYPD3	19	43965542	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1104542	43965542	15163441	932	43990											
ZNF234	10780	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	44661482	44661482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	44661482	G	A	44661482	3	1	703	1	0	0	0	0	1	0	0	0	17799	1145	40	1	1327	1	ZNF234	19	44661482	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	695940	44661482	14467501	933	43991											
CEACAM16	388551	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	45207383	45207383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	45207383	G	A	45207383	3	1	703	1	0	0	0	0	1	0	0	0	3190	1087	38	1	488	1	CEACAM16	19	45207383	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	545901	45207383	13921600	934	43992											
BCL3	602	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45262838	45262838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	45262838	C	T	45262838	3	4	703	1	0	0	0	0	1	0	0	0	1375	652	23	1	1365	1	BCL3	19	45262838	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	55455	45262838	13866145	935	43993											
PVRL2	5819	broad.mit.edu	37	19	45375403	45375403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	45375403	C	T	45375403	3	4	703	1	0	0	0	0	1	0	0	0	12853	536	19	1	782	1	PVRL2	19	45375403	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	112565	45375403	13753580	936	43994											
TOMM40	10452	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	45397308	45397308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	45397308	G	A	45397308	3	1	703	1	0	0	0	0	1	0	0	0	16370	1145	40	1	646	1	TOMM40	19	45397308	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	21905	45397308	13731675	937	43995											
RSPH6A	81492	broad.mit.edu;ucsc.edu	37	19	46308230	46308230	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	46308230	G	A	46308230	2	1	703	1	0	0	0	0	0	0	0	1	13720	1049	37	1		1	RSPH6A	19	46308230	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	910922	46308230	12820753	938	43996											
GRIN2D	2906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	48945611	48945611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	48945611	G	A	48945611	3	1	703	1	0	0	0	0	1	0	0	0	6789	1087	38	1	2687	1	GRIN2D	19	48945611	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2637381	48945611	10183372	939	43997											
LMTK3	114783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	49002432	49002432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49002432	G	A	49002432	3	1	703	1	0	0	0	0	1	0	0	0	8867	1086	38	1	2508	1	LMTK3	19	49002432	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	56821	49002432	10126551	940	43998											
FUT2	2524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	49206425	49206425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49206425	G	A	49206425	3	1	703	1	0	0	0	0	1	0	0	0	6111	1087	38	1	214	1	FUT2	19	49206425	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	203993	49206425	9922558	941	43999											
GYS1	2997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	49473833	49473833	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	49473833	G	A	49473833	2	1	703	1	0	0	0	0	0	0	0	1	6919	1103	39	1		1	GYS1	19	49473833	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	267408	49473833	9655150	942	44000											
NTF4	4909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	49564657	49564657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	49564657	C	T	49564657	3	4	703	1	0	0	0	0	1	0	0	0	10704	536	19	1	38	1	NTF4	19	49564657	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	90824	49564657	9564326	943	44001											
AP2A1	160	hgsc.bcm.edu	37	19	50305240	50305240	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	50305240	G	A	50305240	2	1	703	1	0	0	0	0	0	0	0	1	739	1045	37	1		1	AP2A1	19	50305240	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	740583	50305240	8823743	944	44002											
ZNF473	25888	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	50548036	50548036	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	50548036	C	T	50548036	2	4	703	1	0	0	0	0	0	0	0	1	17943	883	31	1		1	ZNF473	19	50548036	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	242796	50548036	8580947	945	44003											
MYH14	79784	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	19	50760714	50760714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	50760714	C	T	50760714	3	4	703	1	0	0	0	0	1	0	0	0	10040	652	23	1	2269	1	MYH14	19	50760714	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	212678	50760714	8368269	946	44004											
LRRC4B	94030	broad.mit.edu	37	19	51021776	51021776	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	51021776	C	T	51021776	2	4	703	1	0	0	0	0	0	0	0	1	9014	755	27	1		1	LRRC4B	19	51021776	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	261062	51021776	8107207	947	44005											
SIGLEC7	27036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	51646040	51646040	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	51646040	G	A	51646040	2	1	703	1	0	0	0	0	0	0	0	1	14326	962	34	2		2	SIGLEC7	19	51646040	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	624264	51646040	7482943	948	44006											
CD33	945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	51738931	51738931	+	Silent	SNP	G	G	A	rs111722079	bycluster	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	51738931	G	A	51738931	2	1	703	1	0	0	0	0	0	0	0	1	3007	1130	39	1		1	CD33	19	51738931	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	92891	51738931	7390052	949	44007											
HAS1	3036	hgsc.bcm.edu	37	19	52217097	52217097	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	52217097	G	A	52217097	2	1	703	1	0	0	0	0	0	0	0	1	6968	1074	38	1		1	HAS1	19	52217097	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	478166	52217097	6911886	950	44008											
ZNF616	90317	broad.mit.edu;mdanderson.org	37	19	52619951	52619951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	52619951	T	C	52619951	3	2	703	1	0	0	0	0	1	0	0	0	18053	1725	60	3	1883	3	ZNF616	19	52619951	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	402854	52619951	6509032	951	44009											
ZNF534	147658	broad.mit.edu	37	19	52941908	52941908	+	Nonsense_Mutation	SNP	C	C	T	rs199880338		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	52941908	C	T	52941908	4	4	703	1	0	0	0	0	0	1	0	0	17985	528	19	1	1248	1	ZNF534	19	52941908	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	321957	52941908	6187075	952	44010											
TSEN34	79042	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	54696083	54696083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	54696083	T	C	54696083	3	2	703	1	0	0	0	0	1	0	0	0	16625	1580	55	3	614	3	TSEN34	19	54696083	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1754175	54696083	4432900	953	44011											
LENG8	114823	hgsc.bcm.edu;mdanderson.org	37	19	54966579	54966579	+	Silent	SNP	C	C	T	rs889147	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	54966579	C	T	54966579	2	4	703	1	0	0	0	0	0	0	0	1	8731	639	23	1		1	LENG8	19	54966579	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	270496	54966579	4162404	954	44012											
KIR3DL3	115653	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	55239156	55239156	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	55239156	G	A	55239156	4	1	703	1	0	0	0	0	0	1	0	0	8329	1270	44	2	449	2	KIR3DL3	19	55239156	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	272577	55239156	3889827	955	44013											
ZNF628	89887	mdanderson.org	37	19	55995597	55995597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	55995597	G	A	55995597	3	1	703	1	0	0	0	0	1	0	0	0	18064	1087	38	1	3027	1	ZNF628	19	55995597	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	756441	55995597	3133386	956	44014											
ZNF835	90485	mdanderson.org	37	19	57175578	57175578	+	Missense_Mutation	SNP	C	C	T	rs12610410	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	57175578	C	T	57175578	3	4	703	1	0	0	0	0	1	0	0	0	18198	739	26	2	626	2	ZNF835	19	57175578	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1179981	57175578	1953405	957	44015											
ZIM3	114026	broad.mit.edu	37	19	57647366	57647366	+	Silent	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	57647366	A	G	57647366	2	3	703	1	0	0	0	0	0	0	0	1	17697	407	15	3		3	ZIM3	19	57647366	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	471788	57647366	1481617	958	44016											
ZNF805	390980	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	19	57765510	57765510	+	Silent	SNP	T	T	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	57765510	T	G	57765510	2	3	703	1	0	0	0	0	0	0	0	1	18184	1596	56	5		5	ZNF805	19	57765510	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	118144	57765510	1363473	959	44017											
ZNF773	374928	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	58017797	58017797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	58017797	G	A	58017797	3	1	703	1	0	0	0	0	1	0	0	0	18158	1145	40	1	348	1	ZNF773	19	58017797	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	252287	58017797	1111186	960	44018											
ZNF776	284309	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	19	58264681	58264681	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	58264681	C	T	58264681	2	4	703	1	0	0	0	0	0	0	0	1	18161	535	19	1		1	ZNF776	19	58264681	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	246884	58264681	864302	961	44019											
RBCK1	10616	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	398443	398443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	398443	A	T	398443	3	4	703	1	0	0	0	0	1	0	0	0	13120	275	10	5	362	5	RBCK1	20	398443	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10		398443	62627077	962	44020											
TBC1D20	128637	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	420958	420958	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	420958	G	A	420958	2	1	703	1	0	0	0	0	0	0	0	1	15621	1136	40	1		1	TBC1D20	20	420958	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	22515	420958	62604562	963	44021											
FAM110A	83541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	826273	826273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	826273	C	T	826273	3	4	703	1	0	0	0	0	1	0	0	0	5400	652	23	1	828	1	FAM110A	20	826273	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	405315	826273	62199247	964	44022											
SNRPB	6628	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2442418	2442418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	2442418	C	T	2442418	3	4	703	1	0	0	0	0	1	0	0	0	14874	768	27	1	19	1	SNRPB	20	2442418	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1616145	2442418	60583102	965	44023											
ZNF343	79175	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	2464066	2464066	+	Missense_Mutation	SNP	G	G	A	rs139834625	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	2464066	G	A	2464066	3	1	703	1	0	0	0	0	1	0	0	0	17870	1145	40	1	262	1	ZNF343	20	2464066	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	21648	2464066	60561454	966	44024											
TMC2	117532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	2560637	2560637	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	2560637	C	T	2560637	4	4	703	1	0	0	0	0	0	1	0	0	15997	644	23	1	795	1	TMC2	20	2560637	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	96571	2560637	60464883	967	44025											
PRNP	5621	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	4680473	4680473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	4680473	G	A	4680473	3	1	703	1	0	0	0	0	1	0	0	0	12554	1145	40	1	609	1	PRNP	20	4680473	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2119836	4680473	58345047	968	44026											
C20orf196	149840	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	5843951	5843951	+	Missense_Mutation	SNP	C	C	T	rs140278441		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	5843951	C	T	5843951	3	4	703	1	0	0	0	0	1	0	0	0	2103	643	23	1	466	1	C20orf196	20	5843951	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1163478	5843951	57181569	969	44027											
MACROD2	140733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	16021924	16021924	+	Splice_Site	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	16021924	G	A	16021924	5	1	703	1	0	0	0	0	0	0	1	0	9153	1275	44	2	1294	2	MACROD2	20	16021924	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10177973	16021924	47003596	970	44028											
OVOL2	58495	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	18022295	18022295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	18022295	G	A	18022295	3	1	703	1	0	0	0	0	1	0	0	0	11334	1087	38	1	441	1	OVOL2	20	18022295	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2000371	18022295	45003225	971	44029											
ZNF133	7692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	18287023	18287023	+	Missense_Mutation	SNP	C	C	T	rs149645929		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	18287023	C	T	18287023	3	4	703	1	0	0	0	0	1	0	0	0	17735	652	23	1	209	1	ZNF133	20	18287023	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	264728	18287023	44738497	972	44030											
RALGAPA2	57186	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	20475759	20475759	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	20475759	A	G	20475759	5	3	703	1	0	0	0	0	0	0	1	0	13027	405	14	3	268	3	RALGAPA2	20	20475759	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2188736	20475759	42549761	973	44031											
NKX2-4	644524	hgsc.bcm.edu;ucsc.edu	37	20	21376975	21376975	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	21376975	G	A	21376975	2	1	703	1	0	0	0	0	0	0	0	1	10459	1256	44	2		2	NKX2-4	20	21376975	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	901216	21376975	41648545	974	44032											
CST5	1473	ucsc.edu;mdanderson.org;bcgsc.ca	37	20	23858242	23858242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	23858242	A	G	23858242	3	3	703	1	0	0	0	0	1	0	0	0	3977	159	6	3	191	3	CST5	20	23858242	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2481267	23858242	39167278	975	44033											
COX4I2	84701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	30231238	30231238	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	30231238	G	A	30231238	2	1	703	1	0	0	0	0	0	0	0	1	3772	1103	39	1		1	COX4I2	20	30231238	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6372996	30231238	32794282	976	44034											
CEP250	11190	ucsc.edu;mdanderson.org;bcgsc.ca	37	20	34050290	34050290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	34050290	A	C	34050290	3	2	703	1	0	0	0	0	1	0	0	0	3254	304	11	5	100	5	CEP250	20	34050290	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3819052	34050290	28975230	977	44035											
SPAG4	6676	ucsc.edu	37	20	34207645	34207645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	34207645	G	A	34207645	3	1	703	1	0	0	0	0	1	0	0	0	14993	1087	38	1	1092	1	SPAG4	20	34207645	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	157355	34207645	28817875	978	44036											
SLC32A1	140679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	37353701	37353701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	37353701	G	A	37353701	3	1	703	1	0	0	0	0	1	0	0	0	14578	1058	37	1	336	1	SLC32A1	20	37353701	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3146056	37353701	25671819	979	44037											
PPP1R16B	26051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	37529279	37529279	+	Missense_Mutation	SNP	G	G	A	rs139690056		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	37529279	G	A	37529279	3	1	703	1	0	0	0	0	1	0	0	0	12376	1059	37	1	537	1	PPP1R16B	20	37529279	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	175578	37529279	25496241	980	44038											
PLCG1	5335	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	39801085	39801085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	39801085	A	G	39801085	3	3	703	1	0	0	0	0	1	0	0	0	12042	391	14	3	3032	3	PLCG1	20	39801085	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2271806	39801085	23224435	981	44039											
LPIN3	64900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	39980542	39980542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	39980542	C	T	39980542	3	4	703	1	0	0	0	0	1	0	0	0	8927	768	27	1	1210	1	LPIN3	20	39980542	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	179457	39980542	23044978	982	44040											
MMP9	4318	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	44641958	44641958	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	44641958	G	A	44641958	2	1	703	1	0	0	0	0	0	0	0	1	9676	1045	37	1		1	MMP9	20	44641958	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4661416	44641958	18383562	983	44041											
SLC2A10	81031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	45355544	45355544	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	45355544	C	T	45355544	4	4	703	1	0	0	0	0	0	1	0	0	14552	528	19	1	1340	1	SLC2A10	20	45355544	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	713586	45355544	17669976	984	44042											
SULF2	55959	broad.mit.edu	37	20	46365622	46365622	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	46365622	G	A	46365622	2	1	703	1	0	0	0	0	0	0	0	1	15383	1136	40	1		1	SULF2	20	46365622	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1010078	46365622	16659898	985	44043											
KCNB1	3745	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	48098552	48098552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	48098552	G	A	48098552	3	1	703	1	0	0	0	0	1	0	0	0	8019	1144	40	1	2118	1	KCNB1	20	48098552	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1732930	48098552	14926968	986	44044											
SPATA2	9825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	48524979	48524979	+	Missense_Mutation	SNP	G	G	A	rs77667957		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	48524979	G	A	48524979	3	1	703	1	0	0	0	0	1	0	0	0	15017	1057	37	1	1521	1	SPATA2	20	48524979	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	426427	48524979	14500541	987	44045											
TMEM189	387521	broad.mit.edu;mdanderson.org	37	20	48744630	48744630	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	48744630	C	T	48744630	2	4	703	1	0	0	0	0	0	0	0	1	16123	523	19	1		1	TMEM189	20	48744630	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	219651	48744630	14280890	988	44046											
FAM65C	140876	broad.mit.edu	37	20	49218734	49218734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	49218734	C	T	49218734	3	4	703	1	0	0	0	0	1	0	0	0	5608	652	23	1	1358	1	FAM65C	20	49218734	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	474104	49218734	13806786	989	44047											
BCAS1	8537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	52601913	52601913	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	52601913	G	A	52601913	2	1	703	1	0	0	0	0	0	0	0	1	1350	1103	39	1		1	BCAS1	20	52601913	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3383179	52601913	10423607	990	44048											
BCAS1	8537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	52645320	52645320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	52645320	C	T	52645320	3	4	703	1	0	0	0	0	1	0	0	0	1350	768	27	1	1456	1	BCAS1	20	52645320	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	43407	52645320	10380200	991	44049											
BMP7	655	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	55803427	55803427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	55803427	G	A	55803427	3	1	703	1	0	0	0	0	1	0	0	0	1465	1115	39	1	850	1	BMP7	20	55803427	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3158107	55803427	7222093	992	44050											
ZBP1	81030	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	20	56185305	56185305	+	Silent	SNP	G	G	A	rs186925447	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	56185305	G	A	56185305	2	1	703	1	0	0	0	0	0	0	0	1	17533	1136	40	1		1	ZBP1	20	56185305	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	381878	56185305	6840215	993	44051											
PMEPA1	56937	broad.mit.edu;mdanderson.org;bcgsc.ca	37	20	56227600	56227600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	56227600	C	T	56227600	3	4	703	1	0	0	0	0	1	0	0	0	12139	768	27	1	494	1	PMEPA1	20	56227600	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	42295	56227600	6797920	994	44052											
ZNF831	128611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	57769704	57769704	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	57769704	C	T	57769704	2	4	703	1	0	0	0	0	0	0	0	1	18197	564	20	2		2	ZNF831	20	57769704	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1542104	57769704	5255816	995	44053											
EDN3	1908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	57899467	57899467	+	Missense_Mutation	SNP	G	G	A	rs11570351	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	57899467	G	A	57899467	3	1	703	1	0	0	0	0	1	0	0	0	4920	1087	38	1	727	1	EDN3	20	57899467	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	129763	57899467	5126053	996	44054											
HRH3	11255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	60791451	60791451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	60791451	G	A	60791451	3	1	703	1	0	0	0	0	1	0	0	0	7364	1203	42	2	392	2	HRH3	20	60791451	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2891984	60791451	2234069	997	44055											
C20orf20	55257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	61429984	61429984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	61429984	G	A	61429984	3	1	703	1	0	0	0	0	1	0	0	0	2105	1145	40	1	326	1	C20orf20	20	61429984	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	638533	61429984	1595536	998	44056											
NKAIN4	128414	broad.mit.edu;mdanderson.org	37	20	61878938	61878938	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	61878938	G	A	61878938	2	1	703	1	0	0	0	0	0	0	0	1	10445	991	35	2		2	NKAIN4	20	61878938	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	448954	61878938	1146582	999	44057											
CHRNA4	1137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	61981545	61981545	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	61981545	C	T	61981545	2	4	703	1	0	0	0	0	0	0	0	1	3387	523	19	1		1	CHRNA4	20	61981545	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	102607	61981545	1043975	1000	44058											
KCNQ2	3785	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	62065203	62065203	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	62065203	C	T	62065203	2	4	703	1	0	0	0	0	0	0	0	1	8090	523	19	1		1	KCNQ2	20	62065203	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	83658	62065203	960317	1001	44059											
C20orf195	79025	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	62187191	62187191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	62187191	C	T	62187191	3	4	703	1	0	0	0	0	1	0	0	0	2102	710	25	2	177	2	C20orf195	20	62187191	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	121988	62187191	838329	1002	44060											
PRIC285	85441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	62200925	62200925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	62200925	G	A	62200925	3	1	703	1	0	0	0	0	1	0	0	0	12495	1144	40	1	7372	1	PRIC285	20	62200925	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13734	62200925	824595	1003	44061											
RTEL1	51750	mdanderson.org	37	20	62322288	62322288	+	Silent	SNP	T	T	C	rs3208007	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	62322288	T	C	62322288	2	2	703	1	0	0	0	0	0	0	0	1	13733	1567	55	3		3	RTEL1	20	62322288	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	121363	62322288	703232	1004	44062											
UCKL1	54963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	62571654	62571654	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	62571654	G	A	62571654	2	1	703	1	0	0	0	0	0	0	0	1	16937	1136	40	1		1	UCKL1	20	62571654	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	249366	62571654	453866	1005	44063											
ZNF512B	57473	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	62598240	62598240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	62598240	G	A	62598240	3	1	703	1	0	0	0	0	1	0	0	0	17969	1086	38	1	2352	1	ZNF512B	20	62598240	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	26586	62598240	427280	1006	44064											
ITSN1	6453	ucsc.edu;mdanderson.org;bcgsc.ca	37	21	35260567	35260567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	35260567	T	C	35260567	3	2	703	1	0	0	0	0	1	0	0	0	7933	1696	59	3	5289	3	ITSN1	21	35260567	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10		35260567	12869328	1007	44065											
KCNE1	3753	mdanderson.org	37	21	35821711	35821711	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	35821711	C	T	35821711	2	4	703	1	0	0	0	0	0	0	0	1	8028	871	31	1		1	KCNE1	21	35821711	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	561144	35821711	12308184	1008	44066											
IGSF5	150084	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	21	41151173	41151173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	41151173	G	A	41151173	3	1	703	1	0	0	0	0	1	0	0	0	7609	1145	40	1	893	1	IGSF5	21	41151173	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5329462	41151173	6978722	1009	44067											
UMODL1	89766	mdanderson.org	37	21	43531403	43531403	+	Missense_Mutation	SNP	C	C	G	rs220127		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	43531403	C	G	43531403	3	3	703	1	0	0	0	0	1	0	0	0	16992	759	27	4	2113	4	UMODL1	21	43531403	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2380230	43531403	4598492	1010	44068											
CCT8L2	150160	broad.mit.edu;mdanderson.org;bcgsc.ca	37	22	17072519	17072519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	17072519	C	T	17072519	3	4	703	1	0	0	0	0	1	0	0	0	2963	855	30	2	755	2	CCT8L2	22	17072519	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		17072519	34232047	1011	44069											
PRODH	5625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	18912624	18912624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	18912624	C	T	18912624	3	4	703	1	0	0	0	0	1	0	0	0	12558	768	27	1	1239	1	PRODH	22	18912624	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1840105	18912624	32391942	1012	44070											
SEPT5	5413	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	19707904	19707904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	19707904	G	A	19707904	3	1	703	1	0	0	0	0	1	0	0	0	14080	1116	39	1	446	1	SEPT5	22	19707904	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	795280	19707904	31596662	1013	44071											
C22orf29	79680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	22	19839716	19839716	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	19839716	G	A	19839716	2	1	703	1	0	0	0	0	0	0	0	1	2143	1136	40	1		1	C22orf29	22	19839716	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	131812	19839716	31464850	1014	44072											
PI4KA	5297	broad.mit.edu;mdanderson.org	37	22	21082095	21082095	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	21082095	C	T	21082095	2	4	703	1	0	0	0	0	0	0	0	1	11880	639	23	1		1	PI4KA	22	21082095	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1242379	21082095	30222471	1015	44073											
ZNF280A	129025	broad.mit.edu;bcgsc.ca	37	22	22868961	22868961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	22868961	C	T	22868961	3	4	703	1	0	0	0	0	1	0	0	0	17826	913	32	2	638	2	ZNF280A	22	22868961	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1786866	22868961	28435605	1016	44074											
IGLL5	100423062	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	23230424	23230424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	23230424	G	A	23230424	3	1	703	1	0	0	0	0	1	0	0	0	7601	1116	39	1	193	1	IGLL5	22	23230424	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	361463	23230424	28074142	1017	44075											
GNAZ	2781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	23438268	23438268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	23438268	G	A	23438268	3	1	703	1	0	0	0	0	1	0	0	0	6521	1058	37	1	388	1	GNAZ	22	23438268	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	207844	23438268	27866298	1018	44076											
SMARCB1	6598	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	24176351	24176351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	24176351	C	T	24176351	3	4	703	1	0	0	0	0	1	0	0	0	14787	536	19	1	1176	1	SMARCB1	22	24176351	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	738083	24176351	27128215	1019	44077											
ADORA2A	135	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	24836835	24836835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	24836835	G	A	24836835	3	1	703	1	0	0	0	0	1	0	0	0	327	1058	37	1	623	1	ADORA2A	22	24836835	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	660484	24836835	26467731	1020	44078											
ADORA2A	135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	24837116	24837116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	24837116	C	T	24837116	3	4	703	1	0	0	0	0	1	0	0	0	327	652	23	1	904	1	ADORA2A	22	24837116	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	281	24837116	26467450	1021	44079											
MYO18B	84700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	26422449	26422449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	26422449	C	T	26422449	3	4	703	1	0	0	0	0	1	0	0	0	10073	893	31	1	6675	1	MYO18B	22	26422449	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1585333	26422449	24882117	1022	44080											
SEZ6L	23544	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	26688611	26688611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	26688611	G	A	26688611	3	1	703	1	0	0	0	0	1	0	0	0	14156	1087	38	1	340	1	SEZ6L	22	26688611	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	266162	26688611	24615955	1023	44081											
CHEK2	11200	broad.mit.edu;mdanderson.org;bcgsc.ca	37	22	29091740	29091740	+	Missense_Mutation	SNP	C	C	T	rs200649225		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	29091740	C	T	29091740	3	4	703	1	0	0	0	0	1	0	0	0	3337	536	19	1	434	1	CHEK2	22	29091740	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2403129	29091740	22212826	1024	44082											
GAL3ST1	9514	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	30951743	30951743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	30951743	C	T	30951743	3	4	703	1	0	0	0	0	1	0	0	0	6204	768	27	1	806	1	GAL3ST1	22	30951743	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1860003	30951743	20352823	1025	44083											
MORC2	22880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	31328607	31328607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	31328607	C	T	31328607	3	4	703	1	0	0	0	0	1	0	0	0	9709	710	25	2	442	2	MORC2	22	31328607	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	376864	31328607	19975959	1026	44084											
EIF4ENIF1	56478	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	31843508	31843508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	31843508	G	A	31843508	3	1	703	1	0	0	0	0	1	0	0	0	5037	1203	42	2	1089	2	EIF4ENIF1	22	31843508	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	514901	31843508	19461058	1027	44085											
EIF4ENIF1	56478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	31851930	31851930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	31851930	C	T	31851930	3	4	703	1	0	0	0	0	1	0	0	0	5037	652	23	1	2001	1	EIF4ENIF1	22	31851930	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8422	31851930	19452636	1028	44086											
PISD	23761	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	32019743	32019743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	32019743	G	A	32019743	3	1	703	1	0	0	0	0	1	0	0	0	11953	1261	44	2	1005	2	PISD	22	32019743	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	167813	32019743	19284823	1029	44087											
RFPL2	10739	broad.mit.edu;bcgsc.ca	37	22	32587274	32587274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	32587274	C	T	32587274	3	4	703	1	0	0	0	0	1	0	0	0	13267	536	19	1	518	1	RFPL2	22	32587274	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	567531	32587274	18717292	1030	44088											
PDXP	57026	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	38061706	38061706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	38061706	T	C	38061706	3	2	703	1	0	0	0	0	1	0	0	0	11705	1580	55	3	725	3	PDXP	22	38061706	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	5474432	38061706	13242860	1031	44089											
TRIOBP	11078	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	38153951	38153951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	38153951	C	T	38153951	3	4	703	1	0	0	0	0	1	0	0	0	16565	768	27	1	6260	1	TRIOBP	22	38153951	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	92245	38153951	13150615	1032	44090											
PLA2G6	8398	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	38522429	38522429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	38522429	C	T	38522429	3	4	703	1	0	0	0	0	1	0	0	0	12015	652	23	1	1076	1	PLA2G6	22	38522429	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	368478	38522429	12782137	1033	44091											
PLA2G6	8398	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	22	38536030	38536030	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	38536030	G	A	38536030	2	1	703	1	0	0	0	0	0	0	0	1	12015	1136	40	1		1	PLA2G6	22	38536030	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13601	38536030	12768536	1034	44092											
KDELR3	11015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	38875685	38875685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	38875685	C	T	38875685	3	4	703	1	0	0	0	0	1	0	0	0	8128	652	23	1	290	1	KDELR3	22	38875685	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	339655	38875685	12428881	1035	44093											
APOBEC3G	60489	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	39482315	39482315	+	Missense_Mutation	SNP	G	G	A	rs17000736	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	39482315	G	A	39482315	3	1	703	1	0	0	0	0	1	0	0	0	794	1087	38	1	789	1	APOBEC3G	22	39482315	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	606630	39482315	11822251	1036	44094											
TNRC6B	23112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	40717184	40717184	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	40717184	C	T	40717184	4	4	703	1	0	0	0	0	0	1	0	0	16353	644	23	1	5272	1	TNRC6B	22	40717184	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1234869	40717184	10587382	1037	44095											
CENPM	79019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	42341239	42341239	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42341239	G	A	42341239	2	1	703	1	0	0	0	0	0	0	0	1	3239	1045	37	1		1	CENPM	22	42341239	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1624055	42341239	8963327	1038	44096											
C22orf32	91689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	42475891	42475891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	42475891	G	T	42475891	3	4	703	1	0	0	0	0	1	0	0	0	2146	1116	39	4	121	4	C22orf32	22	42475891	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	134652	42475891	8828675	1039	44097											
C22orf32	91689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	42475902	42475902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42475902	C	A	42475902	3	1	703	1	0	0	0	0	1	0	0	0	2146	507	18	4	132	4	C22orf32	22	42475902	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11	42475902	8828664	1040	44098											
CYP2D6	1565	broad.mit.edu;mdanderson.org;bcgsc.ca	37	22	42525053	42525053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	42525053	C	T	42525053	3	4	703	1	0	0	0	0	1	0	0	0	4171	768	27	1	1034	1	CYP2D6	22	42525053	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	49151	42525053	8779513	1041	44099											
TCF20	6942	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	42607545	42607545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	42607545	C	T	42607545	3	4	703	1	0	0	0	0	1	0	0	0	15702	536	19	1	2153	1	TCF20	22	42607545	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	82492	42607545	8697021	1042	44100											
POLDIP3	84271	broad.mit.edu	37	22	42987962	42987962	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	42987962	G	A	42987962	2	1	703	1	0	0	0	0	0	0	0	1	12202	1159	40	1		1	POLDIP3	22	42987962	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	380417	42987962	8316604	1043	44101											
ARFGAP3	26286	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	43236982	43236982	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	43236982	G	A	43236982	4	1	703	1	0	0	0	0	0	1	0	0	851	1095	38	1	1377	1	ARFGAP3	22	43236982	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	249020	43236982	8067584	1044	44102											
TSPO	706	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	43558971	43558971	+	Missense_Mutation	SNP	C	C	T	rs41371752	bycluster;byfrequency;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	43558971	C	T	43558971	3	4	703	1	0	0	0	0	1	0	0	0	16667	768	27	1	494	1	TSPO	22	43558971	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	321989	43558971	7745595	1045	44103											
CELSR1	9620	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	46806300	46806300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	46806300	C	T	46806300	3	4	703	1	0	0	0	0	1	0	0	0	3223	652	23	1	4232	1	CELSR1	22	46806300	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3247329	46806300	4498266	1046	44104											
TBC1D22A	25771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	47189694	47189694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	47189694	G	A	47189694	3	1	703	1	0	0	0	0	1	0	0	0	15623	1116	39	1	426	1	TBC1D22A	22	47189694	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	383394	47189694	4114872	1047	44105											
BRD1	23774	ucsc.edu	37	22	50217223	50217223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	50217223	A	G	50217223	3	3	703	1	0	0	0	0	1	0	0	0	1503	159	6	3	2481	3	BRD1	22	50217223	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3027529	50217223	1087343	1048	44106											
PANX2	56666	broad.mit.edu	37	22	50617544	50617544	+	Silent	SNP	G	G	A	rs114447696		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	50617544	G	A	50617544	2	1	703	1	0	0	0	0	0	0	0	1	11428	1074	38	1		1	PANX2	22	50617544	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	400321	50617544	687022	1049	44107											
TUBGCP6	85378	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	50664592	50664592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	50664592	C	T	50664592	3	4	703	1	0	0	0	0	1	0	0	0	16782	536	19	1	3807	1	TUBGCP6	22	50664592	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	47048	50664592	639974	1050	44108											
PLXNB2	23654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	22	50720400	50720400	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	50720400	G	A	50720400	2	1	703	1	0	0	0	0	0	0	0	1	12131	1136	40	1		1	PLXNB2	22	50720400	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	55808	50720400	584166	1051	44109											
PLXNB2	23654	hgsc.bcm.edu	37	22	50726135	50726135	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	50726135	G	A	50726135	2	1	703	1	0	0	0	0	0	0	0	1	12131	1078	38	1		1	PLXNB2	22	50726135	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5735	50726135	578431	1052	44110											
ARSA	410	broad.mit.edu	37	22	51064679	51064679	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	51064679	G	A	51064679	2	1	703	1	0	0	0	0	0	0	0	1	987	1074	38	1		1	ARSA	22	51064679	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	338544	51064679	239887	1053	44111											
SHANK3	85358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	22	51117231	51117231	+	Silent	SNP	C	C	T	rs79762996	byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	51117231	C	T	51117231	2	4	703	1	0	0	0	0	0	0	0	1	14279	535	19	1		1	SHANK3	22	51117231	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	52552	51117231	187335	1054	44112											
SLC25A6	293	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	1506261	1506261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	1506261	G	A	1506261	3	1	703	1	0	0	0	0	1	0	0	0	14526	1087	38	1	254	1	SLC25A6	23	1506261	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		1506261	153764299	1055	44113											
ARSH	347527	broad.mit.edu	37	X	2933300	2933300	+	Silent	SNP	C	C	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	2933300	C	A	2933300	2	1	703	1	0	0	0	0	0	0	0	1	993	668	24	4		4	ARSH	23	2933300	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1427039	2933300	152337260	1056	44114											
NLGN4X	57502	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	5827148	5827148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	5827148	G	A	5827148	3	1	703	1	0	0	0	0	1	0	0	0	10471	1059	37	1	1704	1	NLGN4X	23	5827148	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2893848	5827148	149443412	1057	44115											
ATXN3L	92552	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	13337345	13337345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	13337345	G	A	13337345	3	1	703	1	0	0	0	0	1	0	0	0	1214	1116	39	1	362	1	ATXN3L	23	13337345	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7510197	13337345	141933215	1058	44116											
KLHL34	257240	hgsc.bcm.edu	37	X	21675168	21675168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	21675168	G	A	21675168	3	1	703	1	0	0	0	0	1	0	0	0	8394	1115	39	1	1199	1	KLHL34	23	21675168	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8337823	21675168	133595392	1059	44117											
CXorf22	170063	mdanderson.org;bcgsc.ca	37	X	35944236	35944236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	35944236	C	T	35944236	3	4	703	1	0	0	0	0	1	0	0	0	4104	643	23	1	358	1	CXorf22	23	35944236	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	14269068	35944236	119326324	1060	44118											
FAM47C	442444	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	37028375	37028375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	37028375	G	A	37028375	3	1	703	1	0	0	0	0	1	0	0	0	5578	1087	38	1	1894	1	FAM47C	23	37028375	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1084139	37028375	118242185	1061	44119											
CCDC22	28952	broad.mit.edu;mdanderson.org	37	X	49106626	49106626	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	49106626	C	T	49106626	2	4	703	1	0	0	0	0	0	0	0	1	2799	697	25	2		2	CCDC22	23	49106626	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12078251	49106626	106163934	1062	44120											
HUWE1	10075	broad.mit.edu;bcgsc.ca	37	X	53615355	53615355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	53615355	G	A	53615355	3	1	703	1	0	0	0	0	1	0	0	0	7468	1145	40	1	8715	1	HUWE1	23	53615355	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4508729	53615355	101655205	1063	44121											
PHF8	23133	broad.mit.edu;mdanderson.org	37	X	54012317	54012317	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	54012317	G	A	54012317	2	1	703	1	0	0	0	0	0	0	0	1	11847	1074	38	1		1	PHF8	23	54012317	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	396962	54012317	101258243	1064	44122											
EDA2R	60401	broad.mit.edu	37	X	65819457	65819457	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	65819457	T	G	65819457	3	3	703	1	0	0	0	0	1	0	0	0	4906	1696	59	5	134	5	EDA2R	23	65819457	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	11807140	65819457	89451103	1065	44123											
KIF4A	24137	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	69595076	69595076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	69595076	C	T	69595076	3	4	703	1	0	0	0	0	1	0	0	0	8310	536	19	1	1863	1	KIF4A	23	69595076	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3775619	69595076	85675484	1066	44124											
TEX11	56159	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	70080718	70080718	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	70080718	G	A	70080718	4	1	703	1	0	0	0	0	0	1	0	0	15786	1153	40	1	2568	1	TEX11	23	70080718	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	485642	70080718	85189842	1067	44125											
GJB1	2705	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	70443744	70443744	+	Missense_Mutation	SNP	G	G	A	rs116840818		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	70443744	G	A	70443744	3	1	703	1	0	0	0	0	1	0	0	0	6414	1145	40	1	189	1	GJB1	23	70443744	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	363026	70443744	84826816	1068	44126											
NHSL2	340527	hgsc.bcm.edu;mdanderson.org	37	X	71360545	71360545	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	71360545	C	T	71360545	2	4	703	1	0	0	0	0	0	0	0	1	10419	755	27	1		1	NHSL2	23	71360545	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	916801	71360545	83910015	1069	44127											
ERCC6L	54821	broad.mit.edu	37	X	71425000	71425000	+	Missense_Mutation	SNP	C	C	T	rs140225715	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	71425000	C	T	71425000	3	4	703	1	0	0	0	0	1	0	0	0	5220	536	19	1	139	1	ERCC6L	23	71425000	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	64455	71425000	83845560	1070	44128											
SLC16A2	6567	broad.mit.edu;bcgsc.ca	37	X	73744294	73744294	+	Missense_Mutation	SNP	C	C	T	rs201194222		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	73744294	C	T	73744294	3	4	703	1	0	0	0	0	1	0	0	0	14421	536	19	1	908	1	SLC16A2	23	73744294	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2319294	73744294	81526266	1071	44129											
ATRX	546	broad.mit.edu	37	X	76888847	76888847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	76888847	C	T	76888847	3	4	703	1	0	0	0	0	1	0	0	0	1208	536	19	1	2564	1	ATRX	23	76888847	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3144553	76888847	78381713	1072	44130											
HDX	139324	broad.mit.edu	37	X	83599463	83599463	+	Silent	SNP	A	A	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	83599463	A	C	83599463	2	2	703	1	0	0	0	0	0	0	0	1	7033	59	3	5		5	HDX	23	83599463	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	6710616	83599463	71671097	1073	44131											
FAM199X	139231	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	103431192	103431192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	103431192	C	T	103431192	3	4	703	1	0	0	0	0	1	0	0	0	5534	875	31	1	633	1	FAM199X	23	103431192	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	19831729	103431192	51839368	1074	44132											
TEX13A	56157	broad.mit.edu	37	X	104463685	104463685	+	Silent	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	104463685	G	A	104463685	2	1	703	1	0	0	0	0	0	0	0	1	15788	1059	37	1		1	TEX13A	23	104463685	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1032493	104463685	50806875	1075	44133											
TBC1D8B	54885	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	106070529	106070529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	106070529	G	A	106070529	3	1	703	1	0	0	0	0	1	0	0	0	15638	1117	39	1	1191	1	TBC1D8B	23	106070529	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1606844	106070529	49200031	1076	44134											
LRCH2	57631	hgsc.bcm.edu	37	X	114357360	114357360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	114357360	C	T	114357360	3	4	703	1	0	0	0	0	1	0	0	0	8940	536	19	1	246	1	LRCH2	23	114357360	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8286831	114357360	40913200	1077	44135											
IL13RA1	3597	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	X	117907851	117907851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	117907851	G	A	117907851	3	1	703	1	0	0	0	0	1	0	0	0	7636	1087	38	1	1053	1	IL13RA1	23	117907851	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3550491	117907851	37362709	1078	44136											
DCAF12L2	340578	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	125299514	125299514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	125299514	G	A	125299514	3	1	703	1	0	0	0	0	1	0	0	0	4267	1087	38	1	1001	1	DCAF12L2	23	125299514	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7391663	125299514	29971046	1079	44137											
BCORL1	63035	mdanderson.org;bcgsc.ca	37	X	129190044	129190044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	129190044	T	C	129190044	3	2	703	1	0	0	0	0	1	0	0	0	1387	1696	59	3	5341	3	BCORL1	23	129190044	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3890530	129190044	26080516	1080	44138											
ZNF280C	55609	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	129363022	129363022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	C	129363022	T	C	129363022	3	2	703	1	0	0	0	0	1	0	0	0	17828	1638	57	3	1177	3	ZNF280C	23	129363022	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	172978	129363022	25907538	1081	44139											
ENOX2	10495	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	129804011	129804011	+	Missense_Mutation	SNP	G	G	A	rs143816261	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	129804011	G	A	129804011	3	1	703	1	0	0	0	0	1	0	0	0	5129	1087	38	1	1159	1	ENOX2	23	129804011	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	440989	129804011	25466549	1082	44140											
ATP11C	286410	broad.mit.edu;mdanderson.org	37	X	138884415	138884415	+	Silent	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	138884415	C	T	138884415	2	4	703	1	0	0	0	0	0	0	0	1	1121	796	28	2		2	ATP11C	23	138884415	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9080404	138884415	16386145	1083	44141											
FMR1	2332	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	147011711	147011711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	147011711	G	A	147011711	3	1	703	1	0	0	0	0	1	0	0	0	5967	1087	38	1	604	1	FMR1	23	147011711	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8127296	147011711	8258849	1084	44142											
DUSP9	1852	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	152915503	152915503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	152915503	G	A	152915503	3	1	703	1	0	0	0	0	1	0	0	0	4834	1145	40	1	908	1	DUSP9	23	152915503	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5903792	152915503	2355057	1085	44143											
PLXNB3	5365	broad.mit.edu	37	X	153037418	153037418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	A	153037418	G	A	153037418	3	1	703	1	0	0	0	0	1	0	0	0	12132	1145	40	1	2789	1	PLXNB3	23	153037418	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	121915	153037418	2233142	1086	44144											
MECP2	4204	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	153296438	153296438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	T	153296438	C	T	153296438	3	4	703	1	0	0	0	0	1	0	0	0	9430	768	27	1	623	1	MECP2	23	153296438	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	259020	153296438	1974122	1087	44145											
F8	2157	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	154197604	154197604	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93	G	154197604	A	G	154197604	5	3	703	1	0	0	0	0	0	0	1	0	5352	405	14	3	6152	3	F8	23	154197604	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	901166	154197604	1072956	1088	44146											
AGRN	375790	broad.mit.edu	37	1	983488	983489	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	CCA	983489	-	CCA	983488	7	5	704	1	0	1	1	0	0	0	0	0	397	797	28	0	3938	0	AGRN	1	983488	In_Frame_Ins	INS	-	TCGA-KN-8429-01A-11D-2310-10		983488	248267133	1	44147	602	2									
AGRN	375790	broad.mit.edu	37	1	983491	983493	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	-	983493	TGA	-	983491	7	5	704	1	0	1	0	1	0	0	0	0	397	1696	59	0	3941	0	AGRN	1	983491	In_Frame_Del	DEL	TGA	TCGA-KN-8429-01A-11D-2310-10	3	983491	248267130	2	44148	602	2									
NBPF1	55672	mdanderson.org	37	1	16907914	16907914	+	Splice_Site	SNP	C	C	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	16907914	C	T	16907914	5	4	704	1	0	0	0	0	0	0	1	0	10199	521	18	2	2104	2	NBPF1	1	16907914	Splice_Site	SNP	C	TCGA-KN-8429-01A-11D-2310-10	15924423	16907914	232342707	3	44149											
RBMXL1	494115	mdanderson.org	37	1	89449237	89449237	+	Missense_Mutation	SNP	T	T	A	rs200727134		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	89449237	T	A	89449237	3	1	704	1	0	0	0	0	1	0	0	0	13166	1548	54	5	903	5	RBMXL1	1	89449237	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	72541323	89449237	159801384	4	44150											
CLCC1	23155	broad.mit.edu	37	1	109486125	109486125	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	109486125	A	C	109486125	3	2	704	1	0	0	0	0	1	0	0	0	3462	131	5	5	1005	5	CLCC1	1	109486125	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	20036888	109486125	139764496	5	44151											
OVGP1	5016	bcgsc.ca	37	1	111957517	111957517	+	Missense_Mutation	SNP	T	T	C	rs3767609	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	111957517	T	C	111957517	3	2	704	1	0	0	0	0	1	0	0	0	11332	1551	54	3	434	3	OVGP1	1	111957517	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	2471392	111957517	137293104	6	44152											
CGN	57530	bcgsc.ca	37	1	151497210	151497210	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	151497210	G	T	151497210	4	4	704	1	0	0	0	0	0	1	0	0	3305	1175	41	4	1488	4	CGN	1	151497210	Nonsense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	39539693	151497210	97753411	7	44153											
ATP8B2	57198	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	1	154315638	154315638	+	Silent	SNP	C	C	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	154315638	C	T	154315638	2	4	704	1	0	0	0	0	0	0	0	1	1195	639	23	1		1	ATP8B2	1	154315638	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	2818428	154315638	94934983	8	44154											
CD5L	922	mdanderson.org;bcgsc.ca	37	1	157805692	157805692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	157805692	C	G	157805692	3	3	704	1	0	0	0	0	1	0	0	0	3029	593	21	4	750	4	CD5L	1	157805692	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	3490054	157805692	91444929	9	44155											
IGFN1	91156	bcgsc.ca	37	1	201181673	201181673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	201181673	G	A	201181673	3	1	704	1	0	0	0	0	1	0	0	0	7597	1116	39	1	7694	1	IGFN1	1	201181673	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	43375981	201181673	48068948	10	44156											
TEKT4	150483	ucsc.edu	37	2	95542418	95542419	+	Missense_Mutation	DNP	TG	TG	CA	rs75603622		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	CA	95542419	TG	CA	95542418	3	2	704	1	0	0	0	0	1	0	0	0	15767	1800	63	3	1234	3	TEKT4	2	95542418	Missense_Mutation	DNP	TG	TCGA-KN-8429-01A-11D-2310-10		95542418	147656955	11	44157											
IL1R2	7850	bcgsc.ca	37	2	102626112	102626112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	102626112	G	T	102626112	3	4	704	1	0	0	0	0	1	0	0	0	7666	991	35	4	162	4	IL1R2	2	102626112	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	7083694	102626112	140573261	12	44158											
POTEF	728378	mdanderson.org	37	2	130872871	130872871	+	Silent	SNP	C	C	T	rs199770435		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	130872871	C	T	130872871	2	4	704	1	0	0	0	0	0	0	0	1	12272	842	30	2		2	POTEF	2	130872871	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	28246759	130872871	112326502	13	44159											
PASK	23178	mdanderson.org	37	2	242080064	242080064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	242080064	G	T	242080064	3	4	704	1	0	0	0	0	1	0	0	0	11479	1261	44	4	3734	4	PASK	2	242080064	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	111207193	242080064	1119309	14	44160											
HDAC11	79885	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	13544436	13544436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	13544436	A	G	13544436	3	3	704	1	0	0	0	0	1	0	0	0	7013	333	12	3	635	3	HDAC11	3	13544436	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		13544436	184477994	15	44161											
LRRIQ4	344657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	169540071	169540071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	169540071	G	A	169540071	3	1	704	1	0	0	0	0	1	0	0	0	9038	1087	38	1	364	1	LRRIQ4	3	169540071	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	155995635	169540071	28482359	16	44162											
TP63	8626	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	189526226	189526226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	189526226	G	A	189526226	3	1	704	1	0	0	0	0	1	0	0	0	16404	1087	38	1	550	1	TP63	3	189526226	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	19986155	189526226	8496204	17	44163											
MUC4	4585	mdanderson.org	37	3	195508997	195508997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	195508997	G	A	195508997	3	1	704	1	0	0	0	0	1	0	0	0	9985	1232	43	2		2	MUC4	3	195508997	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	5982771	195508997	2513433	18	44164			1	124		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	broad.mit.edu	37	3	195509691	195509691	+	Silent	SNP	T	T	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	195509691	T	A	195509691	2	1	704	1	0	0	0	0	0	0	0	1	9985	1567	55	5		5	MUC4	3	195509691	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10	694	195509691	2512739	19	44165			1	124		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	3	195510121	195510121	+	Missense_Mutation	SNP	A	A	G	rs7374898		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	195510121	A	G	195510121	3	3	704	1	0	0	0	0	1	0	0	0	9985	391	14	3		3	MUC4	3	195510121	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	430	195510121	2512309	20	44166			1	124		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	3	195510133	195510133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	195510133	T	C	195510133	3	2	704	1	0	0	0	0	1	0	0	0	9985	1725	60	3		3	MUC4	3	195510133	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	12	195510133	2512297	21	44167			1	124		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	3	195510146	195510146	+	Missense_Mutation	SNP	G	G	C	rs199750921		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	195510146	G	C	195510146	3	2	704	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195510146	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	13	195510146	2512284	22	44168			1	124		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	3	195511093	195511093	+	Missense_Mutation	SNP	C	C	T	rs402405		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	195511093	C	T	195511093	3	4	704	1	0	0	0	0	1	0	0	0	9985	797	28	2		2	MUC4	3	195511093	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	947	195511093	2511337	23	44169			1	124		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	3	195511283	195511283	+	Missense_Mutation	SNP	C	C	G	rs34000993	alternate_allele	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	195511283	C	G	195511283	3	3	704	1	0	0	0	0	1	0	0	0	9985	768	27	4		4	MUC4	3	195511283	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	190	195511283	2511147	24	44170			1	124		7	7	2287	N	T_G_C_A	2.404039e-17
LGI2	55203	hgsc.bcm.edu;ucsc.edu	37	4	25005583	25005583	+	Silent	SNP	C	C	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	25005583	C	T	25005583	2	4	704	1	0	0	0	0	0	0	0	1	8759	639	23	1		1	LGI2	4	25005583	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10		25005583	166148693	25	44171											
ADAMTS3	9508	broad.mit.edu;mdanderson.org	37	4	73205262	73205262	+	Silent	SNP	A	A	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	73205262	A	G	73205262	2	3	704	1	0	0	0	0	0	0	0	1	267	30	2	3		3	ADAMTS3	4	73205262	Silent	SNP	A	TCGA-KN-8429-01A-11D-2310-10	48199679	73205262	117949014	26	44172											
C4orf17	84103	broad.mit.edu;mdanderson.org	37	4	100460404	100460404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	100460404	A	C	100460404	3	2	704	1	0	0	0	0	1	0	0	0	2254	246	9	5	735	5	C4orf17	4	100460404	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	27255142	100460404	90693872	27	44173											
TBCK	93627	broad.mit.edu	37	4	107154198	107154198	+	Silent	SNP	A	A	G	rs149535149		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	107154198	A	G	107154198	2	3	704	1	0	0	0	0	0	0	0	1	15648	273	10	3		3	TBCK	4	107154198	Silent	SNP	A	TCGA-KN-8429-01A-11D-2310-10	6693794	107154198	84000078	28	44174											
TERT	7015	broad.mit.edu	37	5	1294102	1294102	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	-	1294102	C	-	1294102	7	5	704	1	0	1	0	1	0	0	0	0	15776	739	26	0	2559	0	TERT	5	1294102	Frame_Shift_Del	DEL	C	TCGA-KN-8429-01A-11D-2310-10		1294102	179621158	29	44175											
ERAP2	64167	bcgsc.ca	37	5	96232568	96232568	+	Splice_Site	SNP	G	G	A	rs75364820		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	96232568	G	A	96232568	5	1	704	1	0	0	0	0	0	0	1	0	5206	1391	48	2	1534	2	ERAP2	5	96232568	Splice_Site	SNP	G	TCGA-KN-8429-01A-11D-2310-10	94938466	96232568	84682692	30	44176											
RNF145	153830	bcgsc.ca	37	5	158630640	158630640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	158630640	T	C	158630640	3	2	704	1	0	0	0	0	1	0	0	0	13460	1792	62	3	2045	3	RNF145	5	158630640	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	62398072	158630640	22284620	31	44177											
ELMO1	9844	broad.mit.edu	37	7	37136306	37136306	+	Silent	SNP	T	T	C	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	37136306	T	C	37136306	2	2	704	1	0	0	0	0	0	0	0	1	5067	1606	56	3		3	ELMO1	7	37136306	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10		37136306	122002357	32	44178											
ATP6V0A4	50617	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	7	138437565	138437566	+	Missense_Mutation	DNP	CT	CT	GA	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	GA	138437566	CT	GA	138437565	3	3	704	1	0	0	0	0	1	0	0	0	1170	564	20	4	1736	4	ATP6V0A4	7	138437565	Missense_Mutation	DNP	CT	TCGA-KN-8429-01A-11D-2310-10	101301259	138437565	20701098	33	44179	603	2									
ATP6V0A4	50617	bcgsc.ca	37	7	138437566	138437566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	138437566	T	A	138437566	3	1	704	1	0	0	0	0	1	0	0	0	1170	1551	54	5	1737	5	ATP6V0A4	7	138437566	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	1	138437566	20701097	34	44180	603	2									
MNX1	3110	hgsc.bcm.edu;bcgsc.ca	37	7	156799223	156799223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	156799223	G	A	156799223	3	1	704	1	0	0	0	0	1	0	0	0	9686	1086	38	1	411	1	MNX1	7	156799223	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	18361657	156799223	2339440	35	44181											
PPP1R3B	79660	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	8998708	8998708	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	8998708	G	A	8998708	4	1	704	1	0	0	0	0	0	1	0	0	12382	1299	45	2	407	2	PPP1R3B	8	8998708	Nonsense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10		8998708	137365314	36	44182											
DOCK5	80005	bcgsc.ca	37	8	25178551	25178551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	25178551	A	G	25178551	3	3	704	1	0	0	0	0	1	0	0	0	4692	159	6	3	1660	3	DOCK5	8	25178551	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	16179843	25178551	121185471	37	44183											
FBXO16	157574	broad.mit.edu	37	8	28321189	28321189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	28321189	C	A	28321189	3	1	704	1	0	0	0	0	1	0	0	0	5736	622	22	4	620	4	FBXO16	8	28321189	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	3142638	28321189	118042833	38	44184											
ABCA1	19	hgsc.bcm.edu	37	9	107556793	107556794	+	Splice_Site	INS	-	-	A	rs5899617		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	107556794	-	A	107556793	8	5	704	1	0	1	1	0	0	0	1	0	28	1536	53	0	1448	0	ABCA1	9	107556793	Splice_Site	INS	-	TCGA-KN-8429-01A-11D-2310-10		107556793	33656638	39	44185											
CUL2	8453	hgsc.bcm.edu;bcgsc.ca	37	10	35320289	35320289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	35320289	C	T	35320289	3	4	704	1	0	0	0	0	1	0	0	0	4057	536	19	1	944	1	CUL2	10	35320289	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10		35320289	100214458	40	44186											
TDRD1	56165	broad.mit.edu	37	10	115973824	115973824	+	Silent	SNP	T	T	C	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	115973824	T	C	115973824	2	2	704	1	0	0	0	0	0	0	0	1	15742	1702	59	3		3	TDRD1	10	115973824	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10	80653535	115973824	19560923	41	44187											
ANO9	338440	broad.mit.edu	37	11	421030	421030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	421030	C	T	421030	3	4	704	1	0	0	0	0	1	0	0	0	704	652	23	1	971	1	ANO9	11	421030	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10		421030	134585486	42	44188											
MUC6	4588	broad.mit.edu	37	11	1018550	1018551	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	1018551	-	G	1018550	7	5	704	1	0	1	1	0	0	0	0	0	9987	59	3	0	3080	0	MUC6	11	1018550	Frame_Shift_Ins	INS	-	TCGA-KN-8429-01A-11D-2310-10	597520	1018550	133987966	43	44189											
OR52M1	119772	mdanderson.org	37	11	4566711	4566711	+	Silent	SNP	C	C	T	rs2709182	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	4566711	C	T	4566711	2	4	704	1	0	0	0	0	0	0	0	1	11133	535	19	1		1	OR52M1	11	4566711	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	3548161	4566711	130439805	44	44190											
ANO3	63982	mdanderson.org	37	11	26569053	26569053	+	Silent	SNP	C	C	T	rs201539223		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	26569053	C	T	26569053	2	4	704	1	0	0	0	0	0	0	0	1	698	776	27	1		1	ANO3	11	26569053	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	22002342	26569053	108437463	45	44191											
OR5D18	219438	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	55587779	55587779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	55587779	C	T	55587779	3	4	704	1	0	0	0	0	1	0	0	0	11164	507	18	2	676	2	OR5D18	11	55587779	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	29018726	55587779	79418737	46	44192											
SF1	7536	mdanderson.org	37	11	64533401	64533401	+	Silent	SNP	A	A	C	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	64533401	A	C	64533401	2	2	704	1	0	0	0	0	0	0	0	1	14158	291	11	5		5	SF1	11	64533401	Silent	SNP	A	TCGA-KN-8429-01A-11D-2310-10	8945622	64533401	70473115	47	44193											
FGF6	2251	ucsc.edu	37	12	4554715	4554715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	4554715	A	G	4554715	3	3	704	1	0	0	0	0	1	0	0	0	5863	43	2	3	616	3	FGF6	12	4554715	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		4554715	129297180	48	44194											
DDX11	1663	mdanderson.org	37	12	31242416	31242416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	31242416	G	A	31242416	3	1	704	1	0	0	0	0	1	0	0	0	4345	971	34	2	898	2	DDX11	12	31242416	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	26687701	31242416	102609479	49	44195											
RPH3A	22895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	113333605	113333605	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	113333605	C	G	113333605	3	3	704	1	0	0	0	0	1	0	0	0	13564	477	17	4	1955	4	RPH3A	12	113333605	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	82091189	113333605	20518290	50	44196											
TUBA3C	7278	mdanderson.org	37	13	19751292	19751292	+	Silent	SNP	T	T	C	rs147482964	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	19751292	T	C	19751292	2	2	704	1	0	0	0	0	0	0	0	1	16758	1567	55	3		3	TUBA3C	13	19751292	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10		19751292	95418586	51	44197	604	2									
TUBA3C	7278	mdanderson.org	37	13	19751301	19751301	+	Silent	SNP	C	C	T	rs140548354	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	19751301	C	T	19751301	2	4	704	1	0	0	0	0	0	0	0	1	16758	639	23	1		1	TUBA3C	13	19751301	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	9	19751301	95418577	52	44198	604	2									
MLNR	2862	broad.mit.edu	37	13	49794805	49794805	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	-	49794805	G	-	49794805	7	5	704	1	0	1	0	1	0	0	0	0	9639	1319	46	0	334	0	MLNR	13	49794805	Frame_Shift_Del	DEL	G	TCGA-KN-8429-01A-11D-2310-10	30043504	49794805	65375073	53	44199											
DACT1	51339	mdanderson.org	37	14	59112179	59112179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	59112179	A	G	59112179	3	3	704	1	0	0	0	0	1	0	0	0	4224	304	11	3	852	3	DACT1	14	59112179	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		59112179	48237361	54	44200											
ENTPD5	957	broad.mit.edu	37	14	74443082	74443082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	74443082	C	T	74443082	3	4	704	1	0	0	0	0	1	0	0	0	5144	623	22	2	731	2	ENTPD5	14	74443082	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	15330903	74443082	32906458	55	44201											
EPB42	2038	broad.mit.edu	37	15	43499534	43499534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	43499534	A	G	43499534	3	3	704	1	0	0	0	0	1	0	0	0	5160	159	6	3	914	3	EPB42	15	43499534	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		43499534	59031858	56	44202											
THSD4	79875	mdanderson.org	37	15	72040774	72040774	+	Silent	SNP	C	C	T	rs1872056	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	72040774	C	T	72040774	2	4	704	1	0	0	0	0	0	0	0	1	15890	776	27	1		1	THSD4	15	72040774	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	28541240	72040774	30490618	57	44203											
RASGRF1	5923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	79324635	79324635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	79324635	G	A	79324635	3	1	704	1	0	0	0	0	1	0	0	0	13085	1203	42	2	2927	2	RASGRF1	15	79324635	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	7283861	79324635	23206757	58	44204											
DHX8	1659	broad.mit.edu	37	17	41585844	41585844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	41585844	A	G	41585844	3	3	704	1	0	0	0	0	1	0	0	0	4517	333	12	3	2520	3	DHX8	17	41585844	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		41585844	39609366	59	44205											
CRHR1	1394	hgsc.bcm.edu	37	17	43910515	43910515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	43910515	G	A	43910515	3	1	704	1	0	0	0	0	1	0	0	0	3873	1203	42	2	907	2	CRHR1	17	43910515	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	2324671	43910515	37284695	60	44206											
USP32	84669	mdanderson.org	37	17	58292024	58292024	+	Missense_Mutation	SNP	C	C	T	rs62069141	bycluster	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	58292024	C	T	58292024	3	4	704	1	0	0	0	0	1	0	0	0	17075	768	27	1	2907	1	USP32	17	58292024	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	14381509	58292024	22903186	61	44207											
ADCYAP1	116	mdanderson.org	37	18	907675	907675	+	Silent	SNP	G	G	A	rs8192597	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	907675	G	A	907675	2	1	704	1	0	0	0	0	0	0	0	1	302	1132	40	1		1	ADCYAP1	18	907675	Silent	SNP	G	TCGA-KN-8429-01A-11D-2310-10		907675	77169573	62	44208											
ANKRD30B	374860	broad.mit.edu	37	18	14837637	14837637	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	-	14837637	G	-	14837637	7	5	704	1	0	1	0	1	0	0	0	0	659	1001	35	0	2711	0	ANKRD30B	18	14837637	Frame_Shift_Del	DEL	G	TCGA-KN-8429-01A-11D-2310-10	13929962	14837637	63239611	63	44209											
MUC16	94025	mdanderson.org	37	19	9025604	9025604	+	Silent	SNP	A	A	G	rs200791776		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	9025604	A	G	9025604	2	3	704	1	0	0	0	0	0	0	0	1	9980	98	4	3		3	MUC16	19	9025604	Silent	SNP	A	TCGA-KN-8429-01A-11D-2310-10		9025604	50103379	64	44210											
ZNF653	115950	broad.mit.edu;ucsc.edu	37	19	11598244	11598244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	11598244	A	G	11598244	3	3	704	1	0	0	0	0	1	0	0	0	18078	275	10	3	837	3	ZNF653	19	11598244	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	2572640	11598244	47530739	65	44211											
OR10H2	26538	mdanderson.org	37	19	15839047	15839047	+	Missense_Mutation	SNP	T	T	C	rs74729097		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	15839047	T	C	15839047	3	2	704	1	0	0	0	0	1	0	0	0	10913	1667	58	3	196	3	OR10H2	19	15839047	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	4240803	15839047	43289936	66	44212											
TMEM91	641649	broad.mit.edu	37	19	41884219	41884219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	G	41884219	A	G	41884219	3	3	704	1	0	0	0	0	1	0	0	0	16232	275	10	3	7	3	TMEM91	19	41884219	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	26045172	41884219	17244764	67	44213											
ZNF418	147686	mdanderson.org	37	19	58439306	58439306	+	Silent	SNP	G	G	A	rs7253514	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	58439306	G	A	58439306	2	1	704	1	0	0	0	0	0	0	0	1	17907	1219	43	2		2	ZNF418	19	58439306	Silent	SNP	G	TCGA-KN-8429-01A-11D-2310-10	16555087	58439306	689677	68	44214											
MN1	4330	hgsc.bcm.edu	37	22	28194900	28194900	+	Silent	SNP	T	T	C	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	28194900	T	C	28194900	2	2	704	1	0	0	0	0	0	0	0	1	9680	1722	60	3		3	MN1	22	28194900	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10		28194900	23109666	69	44215			2	125		3	3	28	N	T_C	1.743724e-09
MN1	4330	mdanderson.org	37	22	28194912	28194912	+	Silent	SNP	T	T	C	rs45520238	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	C	28194912	T	C	28194912	2	2	704	1	0	0	0	0	0	0	0	1	9680	1722	60	3		3	MN1	22	28194912	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10	12	28194912	23109654	70	44216			2	125		3	3	28	N	T_C	1.743724e-09
MN1	4330	mdanderson.org	37	22	28194927	28194927	+	Silent	SNP	C	C	T	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	T	28194927	C	T	28194927	2	4	704	1	0	0	0	0	0	0	0	1	9680	796	28	2		2	MN1	22	28194927	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	15	28194927	23109639	71	44217			2	125		3	3	28	N	T_C	1.743724e-09
PLXNB3	5365	bcgsc.ca	37	X	153035378	153035378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7	A	153035378	G	A	153035378	3	1	704	1	0	0	0	0	1	0	0	0	12132	1087	38	1	1753	1	PLXNB3	23	153035378	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10		153035378	2235182	72	44218											
ARHGEF19	128272	broad.mit.edu	37	1	16525737	16525737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	16525737	A	G	16525737	3	3	705	1	0	0	0	0	1	0	0	0	902	43	2	3	257	3	ARHGEF19	1	16525737	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10		16525737	232724884	1	44219											
RCAN3	11123	hgsc.bcm.edu;bcgsc.ca	37	1	24861635	24861635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	24861635	T	C	24861635	3	2	705	1	0	0	0	0	1	0	0	0	13183	1770	62	3	608	3	RCAN3	1	24861635	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	8335898	24861635	224388986	2	44220											
CELSR2	1952	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	109805471	109805471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	109805471	G	T	109805471	3	4	705	1	0	0	0	0	1	0	0	0	3224	1290	45	4	4614	4	CELSR2	1	109805471	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	84943836	109805471	139445150	3	44221											
NBPF16	728936	ucsc.edu	37	1	148756448	148756448	+	Missense_Mutation	SNP	G	G	A	rs201036679		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	148756448	G	A	148756448	3	1	705	1	0	0	0	0	1	0	0	0	10203	1116	39	1	3908	1	NBPF16	1	148756448	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	38950977	148756448	100494173	4	44222											
CENPF	1063	broad.mit.edu	37	1	214815136	214815136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	214815136	A	G	214815136	3	3	705	1	0	0	0	0	1	0	0	0	3233	304	11	3	3497	3	CENPF	1	214815136	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	66058688	214815136	34435485	5	44223											
ALLC	55821	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	2	3743874	3743874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	3743874	G	A	3743874	3	1	705	1	0	0	0	0	1	0	0	0	534	1232	43	2	707	2	ALLC	2	3743874	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		3743874	239455499	6	44224											
LIPT1	51601	broad.mit.edu	37	2	99778524	99778524	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	99778524	A	T	99778524	3	4	705	1	0	0	0	0	1	0	0	0	8836	188	7	5	106	5	LIPT1	2	99778524	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	96034650	99778524	143420849	7	44225											
GPR148	344561	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	131486934	131486934	+	Silent	SNP	G	G	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	131486934	G	A	131486934	2	1	705	1	0	0	0	0	0	0	0	1	6660	1306	46	2		2	GPR148	2	131486934	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	31708410	131486934	111712439	8	44226											
LCT	3938	broad.mit.edu;mdanderson.org	37	2	136558375	136558375	+	Silent	SNP	G	G	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	136558375	G	A	136558375	2	1	705	1	0	0	0	0	0	0	0	1	8700	929	33	2		2	LCT	2	136558375	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	5071441	136558375	106640998	9	44227											
GAD1	2571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	2	171709233	171709233	+	Silent	SNP	A	A	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	171709233	A	C	171709233	2	2	705	1	0	0	0	0	0	0	0	1	6186	175	7	5		5	GAD1	2	171709233	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10	35150858	171709233	71490140	10	44228											
TTN	7273	broad.mit.edu	37	2	179426292	179426292	+	Silent	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	179426292	A	G	179426292	2	3	705	1	0	0	0	0	0	0	0	1	16747	340	12	3		3	TTN	2	179426292	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10	7717059	179426292	63773081	11	44229											
FANCD2	2177	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	10107113	10107113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	10107113	G	A	10107113	3	1	705	1	0	0	0	0	1	0	0	0	5672	1116	39	1	2294	1	FANCD2	3	10107113	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		10107113	187915317	12	44230											
C3orf20	84077	broad.mit.edu;hgsc.bcm.edu	37	3	14724245	14724246	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	14724246	-	A	14724245	7	5	705	1	0	1	1	0	0	0	0	0	2215	943	33	0	27	0	C3orf20	3	14724245	Frame_Shift_Ins	INS	-	TCGA-KN-8430-01A-11D-2310-10	4617132	14724245	183298185	13	44231	605	2									
C3orf20	84077	bcgsc.ca	37	3	14724246	14724247	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	14724247	-	A	14724246	7	5	705	1	0	1	1	0	0	0	0	0	2215	246	9	0	28	0	C3orf20	3	14724246	Frame_Shift_Ins	INS	-	TCGA-KN-8430-01A-11D-2310-10	1	14724246	183298184	14	44232	605	2									
DAZL	1618	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	16630168	16630168	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	16630168	C	G	16630168	3	3	705	1	0	0	0	0	1	0	0	0	4248	837	29	4	4	4	DAZL	3	16630168	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	1905922	16630168	181392262	15	44233											
DAZL	1618	hgsc.bcm.edu;mdanderson.org	37	3	16630220	16630221	+	Splice_Site	DNP	CC	CC	TT	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	TT	16630221	CC	TT	16630220	5	4	705	1	0	0	0	0	0	0	1	0	4248	869	30	2	56	2	DAZL	3	16630220	Splice_Site	DNP	CC	TCGA-KN-8430-01A-11D-2310-10	52	16630220	181392210	16	44234	606	2									
DAZL	1618	bcgsc.ca	37	3	16630221	16630221	+	Splice_Site	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	16630221	C	T	16630221	5	4	705	1	0	0	0	0	0	0	1	0	4248	695	24	2	57	2	DAZL	3	16630221	Splice_Site	SNP	C	TCGA-KN-8430-01A-11D-2310-10	1	16630221	181392209	17	44235	606	2									
SMARCC1	6599	hgsc.bcm.edu	37	3	47823126	47823126	+	Silent	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	47823126	C	T	47823126	2	4	705	1	0	0	0	0	0	0	0	1	14788	639	23	1		1	SMARCC1	3	47823126	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	31192905	47823126	150199304	18	44236											
PBRM1	55193	mdanderson.org;bcgsc.ca	37	3	52643600	52643600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	52643600	C	A	52643600	3	1	705	1	0	0	0	0	1	0	0	0	11498	913	32	4	2664	4	PBRM1	3	52643600	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	4820474	52643600	145378830	19	44237											
CACNA1D	776	broad.mit.edu	37	3	53844075	53844075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	53844075	G	T	53844075	3	4	705	1	0	0	0	0	1	0	0	0	2543	1357	47	4	6300	4	CACNA1D	3	53844075	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	1200475	53844075	144178355	20	44238											
OR5H14	403273	mdanderson.org	37	3	97868391	97868391	+	Silent	SNP	T	T	C	rs143765725		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	97868391	T	C	97868391	2	2	705	1	0	0	0	0	0	0	0	1	11167	1432	50	3		3	OR5H14	3	97868391	Silent	SNP	T	TCGA-KN-8430-01A-11D-2310-10	44024316	97868391	100154039	21	44239											
STAG1	10274	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	136076575	136076575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	136076575	C	T	136076575	3	4	705	1	0	0	0	0	1	0	0	0	15254	855	30	2	752	2	STAG1	3	136076575	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	38208184	136076575	61945855	22	44240											
MUC4	4585	mdanderson.org	37	3	195505762	195505762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	195505762	A	G	195505762	3	3	705	1	0	0	0	0	1	0	0	0	9985	72	3	3		3	MUC4	3	195505762	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	59429187	195505762	2516668	23	44241			1	126		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	3	195507059	195507059	+	Missense_Mutation	SNP	T	T	C	rs76367261		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	195507059	T	C	195507059	3	2	705	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195507059	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	1297	195507059	2515371	24	44242			1	126		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	3	195507926	195507926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	195507926	C	T	195507926	3	4	705	1	0	0	0	0	1	0	0	0	9985	652	23	1		1	MUC4	3	195507926	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	867	195507926	2514504	25	44243			1	126		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	3	195508982	195508982	+	Missense_Mutation	SNP	C	C	T	rs79543693	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	195508982	C	T	195508982	3	4	705	1	0	0	0	0	1	0	0	0	9985	884	31	1		1	MUC4	3	195508982	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	1056	195508982	2513448	26	44244			1	126		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	3	195509142	195509142	+	Silent	SNP	C	C	G	rs12487058	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	195509142	C	G	195509142	2	3	705	1	0	0	0	0	0	0	0	1	9985	755	27	4		4	MUC4	3	195509142	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	160	195509142	2513288	27	44245			1	126		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	3	195511884	195511884	+	Missense_Mutation	SNP	G	G	C	rs71617318		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	195511884	G	C	195511884	3	2	705	1	0	0	0	0	1	0	0	0	9985	1136	40	4		4	MUC4	3	195511884	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	2742	195511884	2510546	28	44246			1	126		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	3	195511911	195511911	+	Silent	SNP	G	G	A	rs200732241		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	195511911	G	A	195511911	2	1	705	1	0	0	0	0	0	0	0	1	9985	1103	39	1		1	MUC4	3	195511911	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	27	195511911	2510519	29	44247			1	126		7	7	6150	N	T_G_C_A	1.737903e-13
SLC26A1	10861	mdanderson.org	37	4	985339	985339	+	Missense_Mutation	SNP	C	C	G	rs200471470	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	985339	C	G	985339	3	3	705	1	0	0	0	0	1	0	0	0	14527	680	24	4	2063	4	SLC26A1	4	985339	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10		985339	190168937	30	44248											
KCTD8	386617	mdanderson.org	37	4	44176969	44176969	+	Silent	SNP	G	G	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	44176969	G	C	44176969	2	2	705	1	0	0	0	0	0	0	0	1	8122	1219	43	4		4	KCTD8	4	44176969	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	43191630	44176969	146977307	31	44249											
KIAA1211	57482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	57181970	57181970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	57181970	G	A	57181970	3	1	705	1	0	0	0	0	1	0	0	0	8222	1059	37	1	2320	1	KIAA1211	4	57181970	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	13005001	57181970	133972306	32	44250											
CCDC158	339965	broad.mit.edu	37	4	77305357	77305357	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	77305357	T	-	77305357	7	5	705	1	0	1	0	1	0	0	0	0	2792	1493	52	0	2811	0	CCDC158	4	77305357	Frame_Shift_Del	DEL	T	TCGA-KN-8430-01A-11D-2310-10	20123387	77305357	113848919	33	44251											
HERC5	51191	broad.mit.edu;mdanderson.org	37	4	89408222	89408222	+	Silent	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	89408222	C	T	89408222	2	4	705	1	0	0	0	0	0	0	0	1	7068	535	19	1		1	HERC5	4	89408222	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	12102865	89408222	101746054	34	44252											
ADH1A	124	mdanderson.org	37	4	100203572	100203572	+	Silent	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	100203572	C	T	100203572	2	4	705	1	0	0	0	0	0	0	0	1	307	680	24	2		2	ADH1A	4	100203572	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	10795350	100203572	90950704	35	44253											
COL25A1	84570	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	110221771	110221771	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	110221771	C	G	110221771	3	3	705	1	0	0	0	0	1	0	0	0	3686	913	32	4	1853	4	COL25A1	4	110221771	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	10018199	110221771	80932505	36	44254											
KIAA1109	84162	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	123265699	123265699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	123265699	C	T	123265699	3	4	705	1	0	0	0	0	1	0	0	0	8215	536	19	1	13002	1	KIAA1109	4	123265699	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	13043928	123265699	67888577	37	44255											
FRG1	2483	mdanderson.org	37	4	190873411	190873411	+	Silent	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	190873411	T	C	190873411	2	2	705	1	0	0	0	0	0	0	0	1	6053	1654	58	3		3	FRG1	4	190873411	Silent	SNP	T	TCGA-KN-8430-01A-11D-2310-10	67607712	190873411	280865	38	44256											
SDHA	6389	mdanderson.org	37	5	236676	236676	+	Missense_Mutation	SNP	G	G	A	rs138277996	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	236676	G	A	236676	3	1	705	1	0	0	0	0	1	0	0	0	13976	1116	39	1	1432	1	SDHA	5	236676	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		236676	180678584	39	44257	607	2									
SDHA	6389	mdanderson.org	37	5	236678	236678	+	Missense_Mutation	SNP	G	G	A	rs111387770	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	236678	G	A	236678	3	1	705	1	0	0	0	0	1	0	0	0	13976	1203	42	2	1434	2	SDHA	5	236678	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	2	236678	180678582	40	44258	607	2									
ZFR	51663	broad.mit.edu	37	5	32444365	32444372	+	Frame_Shift_Del	DEL	GCCCCGCT	GCCCCGCT	-	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	GCCCCGCT	GCCCCGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	32444372	GCCCCGCT	-	32444365	7	5	705	1	0	1	0	1	0	0	0	0	17671	1087	38	0	3193	0	ZFR	5	32444365	Frame_Shift_Del	DEL	GCCCCGCT	TCGA-KN-8430-01A-11D-2310-10	32207687	32444365	148470895	41	44259	608	2									
ZFR	51663	bcgsc.ca	37	5	32444366	32444373	+	Frame_Shift_Del	DEL	GCCCCGCT	GCCCCGCT	-	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	GCCCCGCT	GCCCCGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	32444373	GCCCCGCT	-	32444366	7	5	705	1	0	1	0	1	0	0	0	0	17671	739	26	0	3194	0	ZFR	5	32444366	Frame_Shift_Del	DEL	GCCCCGCT	TCGA-KN-8430-01A-11D-2310-10	1	32444366	148470894	42	44260	608	2									
CMYA5	202333	broad.mit.edu	37	5	79025641	79025641	+	Silent	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	79025641	A	G	79025641	2	3	705	1	0	0	0	0	0	0	0	1	3592	175	7	3		3	CMYA5	5	79025641	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10	46581275	79025641	101889619	43	44261											
DMXL1	1657	broad.mit.edu	37	5	118505983	118505983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	118505983	A	G	118505983	3	3	705	1	0	0	0	0	1	0	0	0	4596	391	14	3	5591	3	DMXL1	5	118505983	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	39480342	118505983	62409277	44	44262											
VEGFA	7422	broad.mit.edu	37	6	43746626	43746626	+	Silent	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	43746626	A	G	43746626	2	3	705	1	0	0	0	0	0	0	0	1	17162	289	10	3		3	VEGFA	6	43746626	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10		43746626	127368441	45	44263											
CAPN11	11131	broad.mit.edu;bcgsc.ca	37	6	44150954	44150954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	44150954	A	G	44150954	3	3	705	1	0	0	0	0	1	0	0	0	2626	295	11	3	2198	3	CAPN11	6	44150954	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	404328	44150954	126964113	46	44264											
DST	667	broad.mit.edu	37	6	56422170	56422171	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	56422171	-	A	56422170	7	5	705	1	0	1	1	0	0	0	0	0	4785	594	21	0	8977	0	DST	6	56422170	Frame_Shift_Ins	INS	-	TCGA-KN-8430-01A-11D-2310-10	12271216	56422170	114692897	47	44265											
SAMD5	389432	broad.mit.edu	37	6	147830410	147830411	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	147830411	-	C	147830410	7	5	705	1	0	1	1	0	0	0	0	0	13836	1087	38	0	348	0	SAMD5	6	147830410	Frame_Shift_Ins	INS	-	TCGA-KN-8430-01A-11D-2310-10	91408240	147830410	23284657	48	44266											
TTLL2	83887	bcgsc.ca	37	6	167753795	167753795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	167753795	A	G	167753795	3	3	705	1	0	0	0	0	1	0	0	0	16739	43	2	3	417	3	TTLL2	6	167753795	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	19923385	167753795	3361272	49	44267											
TRRAP	8295	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	98609129	98609129	+	Missense_Mutation	SNP	G	G	A	rs145619183		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	98609129	G	A	98609129	3	1	705	1	0	0	0	0	1	0	0	0	16613	1087	38	1	11453	1	TRRAP	7	98609129	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		98609129	60529534	50	44268											
MYL10	93408	hgsc.bcm.edu;mdanderson.org	37	7	101267298	101267298	+	Missense_Mutation	SNP	G	G	C	rs186580198	by1000genomes	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	101267298	G	C	101267298	3	2	705	1	0	0	0	0	1	0	0	0	10051	933	33	4	529	4	MYL10	7	101267298	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	2658169	101267298	57871365	51	44269											
SSPO	23145	broad.mit.edu;mdanderson.org	37	7	149480236	149480236	+	Silent	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	149480236	C	T	149480236	2	4	705	1	0	0	0	0	0	0	0	1	15201	535	19	1		1	SSPO	7	149480236	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	48212938	149480236	9658427	52	44270											
NOM1	64434	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	7	156742689	156742689	+	Silent	SNP	G	G	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	156742689	G	A	156742689	2	1	705	1	0	0	0	0	0	0	0	1	10537	1165	41	2		2	NOM1	7	156742689	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	7262453	156742689	2395974	53	44271											
CLN8	2055	broad.mit.edu;hgsc.bcm.edu	37	8	1728652	1728652	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	1728652	G	-	1728652	7	5	705	1	0	1	0	1	0	0	0	0	3548	1103	39	0	786	0	CLN8	8	1728652	Frame_Shift_Del	DEL	G	TCGA-KN-8430-01A-11D-2310-10		1728652	144635370	54	44272	609	2									
CLN8	2055	bcgsc.ca	37	8	1728653	1728653	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	1728653	G	-	1728653	7	5	705	1	0	1	0	1	0	0	0	0	3548	1261	44	0	787	0	CLN8	8	1728653	Frame_Shift_Del	DEL	G	TCGA-KN-8430-01A-11D-2310-10	1	1728653	144635369	55	44273	609	2									
MTMR9	66036	broad.mit.edu	37	8	11162509	11162509	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	11162509	A	-	11162509	7	5	705	1	0	1	0	1	0	0	0	0	9957	131	5	0	591	0	MTMR9	8	11162509	Frame_Shift_Del	DEL	A	TCGA-KN-8430-01A-11D-2310-10	9433856	11162509	135201513	56	44274											
NSMAF	8439	bcgsc.ca	37	8	59512397	59512397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	59512397	G	T	59512397	3	4	705	1	0	0	0	0	1	0	0	0	10681	962	34	4	1444	4	NSMAF	8	59512397	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	48349888	59512397	86851625	57	44275											
SLC26A7	115111	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	92378833	92378833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	92378833	T	C	92378833	3	2	705	1	0	0	0	0	1	0	0	0	14535	1435	50	3	1564	3	SLC26A7	8	92378833	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	32866436	92378833	53985189	58	44276											
RHPN1	114822	broad.mit.edu	37	8	144462920	144462920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	144462920	T	C	144462920	3	2	705	1	0	0	0	0	1	0	0	0	13363	1609	56	3	1420	3	RHPN1	8	144462920	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	52084087	144462920	1901102	59	44277											
IFNA21	3452	mdanderson.org	37	9	21166520	21166520	+	Missense_Mutation	SNP	C	C	G	rs140583107		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	21166520	C	G	21166520	3	3	705	1	0	0	0	0	1	0	0	0	7545	797	28	4	481	4	IFNA21	9	21166520	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10		21166520	120046911	60	44278											
FKTN	2218	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	9	108358893	108358893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	108358893	G	T	108358893	3	4	705	1	0	0	0	0	1	0	0	0	5926	1368	48	4	126	4	FKTN	9	108358893	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	87192373	108358893	32854538	61	44279											
RC3H2	54542	bcgsc.ca	37	9	125639808	125639808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	125639808	C	T	125639808	3	4	705	1	0	0	0	0	1	0	0	0	13180	681	24	2	2438	2	RC3H2	9	125639808	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	17280915	125639808	15573623	62	44280											
LAMC3	10319	bcgsc.ca	37	9	133951292	133951292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	133951292	T	C	133951292	3	2	705	1	0	0	0	0	1	0	0	0	8623	1609	56	3	3651	3	LAMC3	9	133951292	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	8311484	133951292	7262139	63	44281											
FRG2B	441581	mdanderson.org	37	10	135438998	135438998	+	Missense_Mutation	SNP	G	G	T	rs200937977		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	135438998	G	T	135438998	3	4	705	1	0	0	0	0	1	0	0	0	6054	1145	40	4	397	4	FRG2B	10	135438998	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		135438998	95749	64	44282											
FRG2B	441581	mdanderson.org	37	10	135439079	135439079	+	Missense_Mutation	SNP	A	A	T	rs201410894		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	135439079	A	T	135439079	3	4	705	1	0	0	0	0	1	0	0	0	6054	275	10	5	478	5	FRG2B	10	135439079	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	81	135439079	95668	65	44283											
MUC6	4588	mdanderson.org	37	11	1018169	1018169	+	Silent	SNP	C	C	G	rs77647814	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	1018169	C	G	1018169	2	3	705	1	0	0	0	0	0	0	0	1	9987	871	31	4		4	MUC6	11	1018169	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10		1018169	133988347	66	44284											
MUC6	4588	mdanderson.org	37	11	1018348	1018348	+	Missense_Mutation	SNP	G	G	A	rs202193006		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	1018348	G	A	1018348	3	1	705	1	0	0	0	0	1	0	0	0	9987	1174	41	2	2878	2	MUC6	11	1018348	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	179	1018348	133988168	67	44285											
MUC2	4583	broad.mit.edu	37	11	1092953	1092953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	1092953	C	T	1092953	3	4	705	1	0	0	0	0	1	0	0	0	9982	536	19	1	4890	1	MUC2	11	1092953	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	74605	1092953	133913563	68	44286											
MUC2	4583	mdanderson.org	37	11	1093047	1093047	+	Silent	SNP	T	T	C	rs12575208	bycluster;by2hit2allele;byhapmap	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	1093047	T	C	1093047	2	2	705	1	0	0	0	0	0	0	0	1	9982	1567	55	3		3	MUC2	11	1093047	Silent	SNP	T	TCGA-KN-8430-01A-11D-2310-10	94	1093047	133913469	69	44287											
WEE1	7465	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	9610060	9610060	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	9610060	A	T	9610060	3	4	705	1	0	0	0	0	1	0	0	0	17356	333	12	5	1894	5	WEE1	11	9610060	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	8517013	9610060	125396456	70	44288											
CD44	960	broad.mit.edu;bcgsc.ca	37	11	35226107	35226107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	35226107	A	G	35226107	3	3	705	1	0	0	0	0	1	0	0	0	3019	246	9	3	1240	3	CD44	11	35226107	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	25616047	35226107	99780409	71	44289											
SIPA1	6494	broad.mit.edu;bcgsc.ca	37	11	65409950	65409950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	65409950	G	C	65409950	3	2	705	1	0	0	0	0	1	0	0	0	14341	1203	42	4	834	4	SIPA1	11	65409950	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	30183843	65409950	69596566	72	44290											
MYO7A	4647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	76917244	76917244	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	76917244	C	G	76917244	3	3	705	1	0	0	0	0	1	0	0	0	10089	535	19	4	5931	4	MYO7A	11	76917244	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	11507294	76917244	58089272	73	44291											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	92543184	92543184	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	92543184	T	A	92543184	4	1	705	1	0	0	0	0	0	1	0	0	5698	1471	51	5	9469	5	FAT3	11	92543184	Nonsense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	15625940	92543184	42463332	74	44292											
OR10G8	219869	mdanderson.org	37	11	123900385	123900385	+	Missense_Mutation	SNP	C	C	A	rs149524303	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	123900385	C	A	123900385	3	1	705	1	0	0	0	0	1	0	0	0	10910	594	21	4	58	4	OR10G8	11	123900385	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	31357201	123900385	11106131	75	44293			2	127		2	2	27	N	G_C	9.49022e-05
OR10G8	219869	mdanderson.org	37	11	123900411	123900411	+	Missense_Mutation	SNP	G	G	A	rs202220125		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	123900411	G	A	123900411	3	1	705	1	0	0	0	0	1	0	0	0	10910	1029	36	2	84	2	OR10G8	11	123900411	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	26	123900411	11106105	76	44294			2	127		2	2	27	N	G_C	9.49022e-05
ADAMTS8	11095	ucsc.edu;bcgsc.ca	37	11	130284611	130284611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	130284611	G	A	130284611	3	1	705	1	0	0	0	0	1	0	0	0	272	1116	39	1	1308	1	ADAMTS8	11	130284611	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	6384200	130284611	4721905	77	44295											
TAS2R46	259292	mdanderson.org	37	12	11214005	11214005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	11214005	C	T	11214005	3	4	705	1	0	0	0	0	1	0	0	0	15594	478	17	2	44	2	TAS2R46	12	11214005	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10		11214005	122637890	78	44296											
TAS2R30	259293	mdanderson.org	37	12	11286736	11286736	+	Silent	SNP	G	G	C	rs112605675		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	11286736	G	C	11286736	2	2	705	1	0	0	0	0	0	0	0	1	15585	1277	45	4		4	TAS2R30	12	11286736	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	72731	11286736	122565159	79	44297											
PRB2	653247	mdanderson.org	37	12	11546751	11546751	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	11546751	G	C	11546751	3	2	705	1	0	0	0	0	1	0	0	0	12453	1368	48	4	993	4	PRB2	12	11546751	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	260015	11546751	122305144	80	44298											
CDKN1B	1027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	12871758	12871758	+	Splice_Site	SNP	G	G	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	12871758	G	C	12871758	5	2	705	1	0	0	0	0	0	0	1	0	3161	956	33	4	481	4	CDKN1B	12	12871758	Splice_Site	SNP	G	TCGA-KN-8430-01A-11D-2310-10	1325007	12871758	120980137	81	44299											
KIF21A	55605	hgsc.bcm.edu;mdanderson.org	37	12	39735383	39735383	+	Silent	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	39735383	C	T	39735383	2	4	705	1	0	0	0	0	0	0	0	1	8295	680	24	2		2	KIF21A	12	39735383	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	26863625	39735383	94116512	82	44300											
TBK1	29110	broad.mit.edu	37	12	64873884	64873884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	64873884	T	C	64873884	3	2	705	1	0	0	0	0	1	0	0	0	15649	1725	60	3	816	3	TBK1	12	64873884	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	25138501	64873884	68978011	83	44301											
GPR133	283383	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	131593399	131593399	+	Missense_Mutation	SNP	G	G	A	rs141128784		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	131593399	G	A	131593399	3	1	705	1	0	0	0	0	1	0	0	0	6650	1145	40	1	2088	1	GPR133	12	131593399	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	66719515	131593399	2258496	84	44302											
SKA3	221150	hgsc.bcm.edu	37	13	21742126	21742126	+	Splice_Site	SNP	C	C	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	21742126	C	A	21742126	5	1	705	1	0	0	0	0	0	0	1	0	14367	521	18	4	565	4	SKA3	13	21742126	Splice_Site	SNP	C	TCGA-KN-8430-01A-11D-2310-10		21742126	93427752	85	44303											
PABPC3	5042	bcgsc.ca	37	13	25671027	25671027	+	Missense_Mutation	SNP	A	A	G	rs78826513	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	25671027	A	G	25671027	3	3	705	1	0	0	0	0	1	0	0	0	11372	131	5	3	693	3	PABPC3	13	25671027	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	3928901	25671027	89498851	86	44304											
PDS5B	23047	bcgsc.ca	37	13	33253045	33253045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	33253045	G	T	33253045	3	4	705	1	0	0	0	0	1	0	0	0	11699	1290	45	4	1070	4	PDS5B	13	33253045	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	7582018	33253045	81916833	87	44305											
ZNF219	51222	mdanderson.org	37	14	21560706	21560706	+	Silent	SNP	C	C	G	rs1065496	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	21560706	C	G	21560706	2	3	705	1	0	0	0	0	0	0	0	1	17785	639	23	4		4	ZNF219	14	21560706	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10		21560706	85788834	88	44306											
FLRT2	23768	mdanderson.org;bcgsc.ca	37	14	86087938	86087938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	86087938	A	G	86087938	3	3	705	1	0	0	0	0	1	0	0	0	5946	391	14	3	82	3	FLRT2	14	86087938	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	64527232	86087938	21261602	89	44307											
CLMN	79789	broad.mit.edu	37	14	95662949	95662949	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	95662949	T	-	95662949	7	5	705	1	0	1	0	1	0	0	0	0	3544	1609	56	0	430	0	CLMN	14	95662949	Frame_Shift_Del	DEL	T	TCGA-KN-8430-01A-11D-2310-10	9575011	95662949	11686591	90	44308											
DEGS2	123099	mdanderson.org	37	14	100625902	100625902	+	Missense_Mutation	SNP	C	C	T	rs7157599	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	100625902	C	T	100625902	3	4	705	1	0	0	0	0	1	0	0	0	4425	797	28	2	960	2	DEGS2	14	100625902	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	4962953	100625902	6723638	91	44309											
MYO9A	4649	mdanderson.org	37	15	72190902	72190902	+	Silent	SNP	G	G	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	72190902	G	T	72190902	2	4	705	1	0	0	0	0	0	0	0	1	10091	1190	42	4		4	MYO9A	15	72190902	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10		72190902	30340490	92	44310											
ZNF598	90850	hgsc.bcm.edu	37	16	2059622	2059622	+	Frame_Shift_Del	DEL	C	C	-	rs11366527		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	2059622	C	-	2059622	7	5	705	1	0	1	0	1	0	0	0	0	18040	739	26	0	2637	0	ZNF598	16	2059622	Frame_Shift_Del	DEL	C	TCGA-KN-8430-01A-11D-2310-10		2059622	88295131	93	44311											
PKD1	5310	mdanderson.org	37	16	2154573	2154573	+	Missense_Mutation	SNP	A	A	C	rs201238819		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	2154573	A	C	2154573	3	2	705	1	0	0	0	0	1	0	0	0	11970	304	11	5	4924	5	PKD1	16	2154573	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	94951	2154573	88200180	94	44312											
ITGAD	3681	broad.mit.edu	37	16	31421837	31421837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	31421837	C	T	31421837	3	4	705	1	0	0	0	0	1	0	0	0	7891	913	32	2	1247	2	ITGAD	16	31421837	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	29267264	31421837	58932916	95	44313											
ZNF319	57567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	58031971	58031971	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	58031971	G	C	58031971	3	2	705	1	0	0	0	0	1	0	0	0	17849	1261	44	4	1553	4	ZNF319	16	58031971	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	26610134	58031971	32322782	96	44314											
CDH16	1014	broad.mit.edu	37	16	66942345	66942345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	66942345	T	C	66942345	3	2	705	1	0	0	0	0	1	0	0	0	3103	1792	62	3	53	3	CDH16	16	66942345	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	8910374	66942345	23412408	97	44315											
HPR	3250	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	72110892	72110892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	72110892	A	G	72110892	3	3	705	1	0	0	0	0	1	0	0	0	7344	333	12	3	977	3	HPR	16	72110892	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	5168547	72110892	18243861	98	44316											
WDR59	79726	broad.mit.edu	37	16	74976691	74976691	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	74976691	T	-	74976691	7	5	705	1	0	1	0	1	0	0	0	0	17320	1493	52	0	2525	0	WDR59	16	74976691	Frame_Shift_Del	DEL	T	TCGA-KN-8430-01A-11D-2310-10	2865799	74976691	15378062	99	44317											
AP2B1	163	ucsc.edu	37	17	34044214	34044214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	34044214	A	G	34044214	3	3	705	1	0	0	0	0	1	0	0	0	741	289	10	3	2705	3	AP2B1	17	34044214	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10		34044214	47150996	100	44318											
HEXDC	284004	broad.mit.edu	37	17	80377733	80377733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	80377733	C	A	80377733	3	1	705	1	0	0	0	0	1	0	0	0	7082	855	30	4	60	4	HEXDC	17	80377733	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	46333519	80377733	817477	101	44319											
SIGLEC15	284266	ucsc.edu	37	18	43418922	43418922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	43418922	T	C	43418922	3	2	705	1	0	0	0	0	1	0	0	0	14323	1551	54	3	750	3	SIGLEC15	18	43418922	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10		43418922	34658326	102	44320											
PPAP2C	8612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	288028	288028	+	Missense_Mutation	SNP	C	C	T	rs148329482	bycluster;by1000genomes	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	288028	C	T	288028	3	4	705	1	0	0	0	0	1	0	0	0	12299	536	19	1	690	1	PPAP2C	19	288028	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10		288028	58840955	103	44321											
DPP9	91039	bcgsc.ca	37	19	4719881	4719881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	4719881	T	C	4719881	3	2	705	1	0	0	0	0	1	0	0	0	4735	1725	60	3	2720	3	DPP9	19	4719881	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	4431853	4719881	54409102	104	44322											
MUC16	94025	mdanderson.org	37	19	9006370	9006370	+	Silent	SNP	A	A	G	rs79341062	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	9006370	A	G	9006370	2	3	705	1	0	0	0	0	0	0	0	1	9980	108	4	3		3	MUC16	19	9006370	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10	4286489	9006370	50122613	105	44323											
MUC16	94025	broad.mit.edu	37	19	9049341	9049341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	9049341	T	C	9049341	3	2	705	1	0	0	0	0	1	0	0	0	9980	1667	58	3	11553	3	MUC16	19	9049341	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	42971	9049341	50079642	106	44324											
ANKLE1	126549	mdanderson.org	37	19	17393015	17393015	+	Missense_Mutation	SNP	C	C	T	rs1864116	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	17393015	C	T	17393015	3	4	705	1	0	0	0	0	1	0	0	0	632	797	28	2	218	2	ANKLE1	19	17393015	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	8343674	17393015	41735968	107	44325											
INSL3	3640	mdanderson.org	37	19	17932190	17932190	+	Silent	SNP	T	T	C	rs1047233	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	17932190	T	C	17932190	2	2	705	1	0	0	0	0	0	0	0	1	7774	1509	53	3		3	INSL3	19	17932190	Silent	SNP	T	TCGA-KN-8430-01A-11D-2310-10	539175	17932190	41196793	108	44326											
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	31768447	31768447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	G	31768447	A	G	31768447	3	3	705	1	0	0	0	0	1	0	0	0	16637	246	9	3	997	3	TSHZ3	19	31768447	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	13836257	31768447	27360536	109	44327											
ZFP30	22835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	38127148	38127148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	38127148	C	A	38127148	3	1	705	1	0	0	0	0	1	0	0	0	17656	826	29	4	1269	4	ZFP30	19	38127148	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	6358701	38127148	21001835	110	44328											
NR1H2	7376	ucsc.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	50881825	G	A	50881825	2	1	705	1	0	0	0	0	0	0	0	1	10624	962	34	2		2	NR1H2	19	50881825	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	12754677	50881825	8247158	111	44329											
LILRA1	11024	mdanderson.org	37	19	55106239	55106239	+	Silent	SNP	G	G	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	55106239	G	A	55106239	2	1	705	1	0	0	0	0	0	0	0	1	8791	1364	48	2		2	LILRA1	19	55106239	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	4224414	55106239	4022744	112	44330											
COL20A1	57642	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	61926524	61926524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	61926524	G	T	61926524	3	4	705	1	0	0	0	0	1	0	0	0	3681	1174	41	4	67	4	COL20A1	20	61926524	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		61926524	1098996	113	44331											
DSCAM	1826	bcgsc.ca	37	21	41719789	41719789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	C	41719789	T	C	41719789	3	2	705	1	0	0	0	0	1	0	0	0	4770	1725	60	3	5132	3	DSCAM	21	41719789	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10		41719789	6410106	114	44332											
KRTAP10-5	386680	broad.mit.edu	37	21	46000294	46000294	+	Silent	SNP	C	C	T	rs201287112		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	46000294	C	T	46000294	2	4	705	1	0	0	0	0	0	0	0	1	8519	639	23	1		1	KRTAP10-5	21	46000294	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	4280505	46000294	2129601	115	44333											
CLTCL1	8218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	19175230	19175230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	A	19175230	G	A	19175230	3	1	705	1	0	0	0	0	1	0	0	0	3569	1319	46	2	493	2	CLTCL1	22	19175230	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		19175230	32129336	116	44334											
KREMEN1	83999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	29517360	29517360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	T	29517360	G	T	29517360	3	4	705	1	0	0	0	0	1	0	0	0	8449	1203	42	4	382	4	KREMEN1	22	29517360	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	10342130	29517360	21787206	117	44335											
USP9Y	8287	broad.mit.edu	37	Y	14888667	14888667	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7	-	14888667	A	-	14888667	7	5	705	1	0	1	0	1	0	0	0	0	17103	131	5	0	2578	0	USP9Y	24	14888667	Frame_Shift_Del	DEL	A	TCGA-KN-8430-01A-11D-2310-10		14888667	44484899	118	44336											
CLCNKB	1188	broad.mit.edu	37	1	16383402	16383402	+	Silent	SNP	C	C	T	rs6698427		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	16383402	C	T	16383402	2	4	706	1	0	0	0	0	0	0	0	1	3472	610	22	2		2	CLCNKB	1	16383402	Silent	SNP	C	TCGA-KN-8431-01A-11D-2310-10		16383402	232867219	1	44337											
USP48	84196	mdanderson.org	37	1	22109370	22109370	+	Silent	SNP	G	G	A	rs10917042	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	22109370	G	A	22109370	2	1	706	1	0	0	0	0	0	0	0	1	17091	1368	48	2		2	USP48	1	22109370	Silent	SNP	G	TCGA-KN-8431-01A-11D-2310-10	5725968	22109370	227141251	2	44338											
C1orf213	148898	broad.mit.edu;hgsc.bcm.edu	37	1	23696027	23696028	+	RNA	INS	-	-	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	23696028	-	T	23696027	6	5	706	0	1	1	1	0	0	0	0	0	2032	564	20	0		0	C1orf213	1	23696027	RNA	INS	-	TCGA-KN-8431-01A-11D-2310-10	1586657	23696027	225554594	3	44339	610	2									
C1orf213	148898	bcgsc.ca	37	1	23696028	23696029	+	RNA	INS	-	-	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	23696029	-	T	23696028	6	5	706	0	1	1	1	0	0	0	0	0	2032	1606	56	0		0	C1orf213	1	23696028	RNA	INS	-	TCGA-KN-8431-01A-11D-2310-10	1	23696028	225554593	4	44340	610	2									
OR2T33	391195	mdanderson.org	37	1	248436932	248436932	+	Missense_Mutation	SNP	C	C	T	rs200639224		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	248436932	C	T	248436932	3	4	706	1	0	0	0	0	1	0	0	0	11031	797	28	2	780	2	OR2T33	1	248436932	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	224740904	248436932	813689	5	44341											
HADHB	3032	broad.mit.edu;bcgsc.ca	37	2	26502036	26502036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	26502036	A	G	26502036	3	3	706	1	0	0	0	0	1	0	0	0	6951	275	10	3	694	3	HADHB	2	26502036	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10		26502036	216697337	6	44342											
NDUFS1	4719	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	207008833	207008833	+	Missense_Mutation	SNP	C	C	G	rs137994727	alternate_allele	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	207008833	C	G	207008833	3	3	706	1	0	0	0	0	1	0	0	0	10298	536	19	4	1327	4	NDUFS1	2	207008833	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	180506797	207008833	36190540	7	44343											
GPD1L	23171	broad.mit.edu	37	3	32169635	32169643	+	In_Frame_Del	DEL	AAGATGTGG	AAGATGTGG	-	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	AAGATGTGG	AAGATGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	-	32169643	AAGATGTGG	-	32169635	7	5	706	1	0	1	0	1	0	0	0	0	6612	131	5	0	121	0	GPD1L	3	32169635	In_Frame_Del	DEL	AAGATGTGG	TCGA-KN-8431-01A-11D-2310-10		32169635	165852795	8	44344	611	2									
GPD1L	23171	bcgsc.ca	37	3	32169636	32169644	+	In_Frame_Del	DEL	AAGATGTGG	AAGATGTGG	-	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	AAGATGTGG	AAGATGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	-	32169644	AAGATGTGG	-	32169636	7	5	706	1	0	1	0	1	0	0	0	0	6612	72	3	0	122	0	GPD1L	3	32169636	In_Frame_Del	DEL	AAGATGTGG	TCGA-KN-8431-01A-11D-2310-10	1	32169636	165852794	9	44345	611	2									
MUC4	4585	mdanderson.org	37	3	195508931	195508931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	195508931	G	A	195508931	3	1	706	1	0	0	0	0	1	0	0	0	9985	1000	35	2		2	MUC4	3	195508931	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	163339295	195508931	2513499	10	44346											
CCNA2	890	broad.mit.edu	37	4	122743634	122743634	+	Silent	SNP	A	A	G	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	122743634	A	G	122743634	2	3	706	1	0	0	0	0	0	0	0	1	2912	59	3	3		3	CCNA2	4	122743634	Silent	SNP	A	TCGA-KN-8431-01A-11D-2310-10		122743634	68410642	11	44347											
NPY2R	4887	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	156136035	156136035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	156136035	T	A	156136035	3	1	706	1	0	0	0	0	1	0	0	0	10616	1464	51	5	946	5	NPY2R	4	156136035	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10	33392401	156136035	35018241	12	44348											
KIF2A	3796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	61653554	61653554	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	61653554	C	T	61653554	4	4	706	1	0	0	0	0	0	1	0	0	8304	528	19	1	721	1	KIF2A	5	61653554	Nonsense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10		61653554	119261706	13	44349											
MEF2C	4208	hgsc.bcm.edu	37	5	88025096	88025096	+	Silent	SNP	A	A	G	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	88025096	A	G	88025096	2	3	706	1	0	0	0	0	0	0	0	1	9464	407	15	3		3	MEF2C	5	88025096	Silent	SNP	A	TCGA-KN-8431-01A-11D-2310-10	26371542	88025096	92890164	14	44350											
DMXL1	1657	broad.mit.edu	37	5	118525451	118525451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	118525451	C	T	118525451	3	4	706	1	0	0	0	0	1	0	0	0	4596	652	23	1	7298	1	DMXL1	5	118525451	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	30500355	118525451	62389809	15	44351											
GCNT2	2651	ucsc.edu	37	6	10626704	10626704	+	Missense_Mutation	SNP	T	T	G	rs200336999		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	10626704	T	G	10626704	3	3	706	1	0	0	0	0	1	0	0	0	6308	1725	60	5	2935	5	GCNT2	6	10626704	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10		10626704	160488363	16	44352											
HLA-A	3105	bcgsc.ca	37	6	29911261	29911261	+	Missense_Mutation	SNP	C	C	G	rs3129018	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	29911261	C	G	29911261	3	3	706	1	0	0	0	0	1	0	0	0	7202	536	19	4	570	4	HLA-A	6	29911261	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	19284557	29911261	141203806	17	44353											
KCNK5	8645	hgsc.bcm.edu	37	6	39159435	39159435	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	39159435	C	T	39159435	4	4	706	1	0	0	0	0	0	1	0	0	8076	595	21	2	772	2	KCNK5	6	39159435	Nonsense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	9248174	39159435	131955632	18	44354											
TREML2	79865	mdanderson.org	37	6	41166022	41166022	+	Silent	SNP	A	A	G	rs139267947	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	41166022	A	G	41166022	2	3	706	1	0	0	0	0	0	0	0	1	16485	127	5	3		3	TREML2	6	41166022	Silent	SNP	A	TCGA-KN-8431-01A-11D-2310-10	2006587	41166022	129949045	19	44355	612	2									
TREML2	79865	mdanderson.org	37	6	41166025	41166025	+	Silent	SNP	G	G	A	rs113267424	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	41166025	G	A	41166025	2	1	706	1	0	0	0	0	0	0	0	1	16485	958	34	2		2	TREML2	6	41166025	Silent	SNP	G	TCGA-KN-8431-01A-11D-2310-10	3	41166025	129949042	20	44356	612	2									
DST	667	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	56480802	56480802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	56480802	C	T	56480802	3	4	706	1	0	0	0	0	1	0	0	0	4785	739	26	2	12936	2	DST	6	56480802	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	15314777	56480802	114634265	21	44357											
RINT1	60561	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	105182935	105182935	+	Silent	SNP	T	T	C	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	C	105182935	T	C	105182935	2	2	706	1	0	0	0	0	0	0	0	1	13389	1432	50	3		3	RINT1	7	105182935	Silent	SNP	T	TCGA-KN-8431-01A-11D-2310-10		105182935	53955728	22	44358											
SMARCA2	6595	broad.mit.edu	37	9	2039815	2039815	+	Silent	SNP	G	G	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	2039815	G	A	2039815	2	1	706	1	0	0	0	0	0	0	0	1	14782	962	34	2		2	SMARCA2	9	2039815	Silent	SNP	G	TCGA-KN-8431-01A-11D-2310-10		2039815	139173616	23	44359											
C8G	733	broad.mit.edu	37	9	139839860	139839860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	139839860	G	T	139839860	3	4	706	1	0	0	0	0	1	0	0	0	2420	1087	38	4	90	4	C8G	9	139839860	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	137800045	139839860	1373571	24	44360											
FBXO18	84893	bcgsc.ca	37	10	5960320	5960320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	C	5960320	T	C	5960320	3	2	706	1	0	0	0	0	1	0	0	0	5738	1725	60	3	2191	3	FBXO18	10	5960320	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10		5960320	129574427	25	44361											
IDE	3416	ucsc.edu	37	10	94291641	94291641	+	Silent	SNP	A	A	G	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	94291641	A	G	94291641	2	3	706	1	0	0	0	0	0	0	0	1	7500	214	8	3		3	IDE	10	94291641	Silent	SNP	A	TCGA-KN-8431-01A-11D-2310-10	88331321	94291641	41243106	26	44362											
MUC6	4588	mdanderson.org	37	11	1017654	1017654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	1017654	G	A	1017654	3	1	706	1	0	0	0	0	1	0	0	0	9987	1232	43	2	2184	2	MUC6	11	1017654	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10		1017654	133988862	27	44363			1	128		2	2	16	G		2.568066e-05
MUC6	4588	mdanderson.org	37	11	1017669	1017669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	1017669	G	A	1017669	3	1	706	1	0	0	0	0	1	0	0	0	9987	1261	44	2	2199	2	MUC6	11	1017669	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	15	1017669	133988847	28	44364			1	128		2	2	16	G		2.568066e-05
OR5M9	390162	broad.mit.edu	37	11	56230641	56230641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	56230641	C	A	56230641	3	1	706	1	0	0	0	0	1	0	0	0	11184	710	25	4	697	4	OR5M9	11	56230641	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	55212972	56230641	78775875	29	44365											
NUMA1	4926	broad.mit.edu	37	11	71715034	71715034	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	71715034	T	G	71715034	3	3	706	1	0	0	0	0	1	0	0	0	10757	1812	63	5	120	5	NUMA1	11	71715034	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10	15484393	71715034	63291482	30	44366											
MED17	9440	mdanderson.org	37	11	93517886	93517886	+	Missense_Mutation	SNP	G	G	C	rs2848477	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	C	93517886	G	C	93517886	3	2	706	1	0	0	0	0	1	0	0	0	9442	1020	36	4	209	4	MED17	11	93517886	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	21802852	93517886	41488630	31	44367											
CNTN5	53942	mdanderson.org	37	11	99690461	99690461	+	Missense_Mutation	SNP	A	A	G	rs10893933		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	99690461	A	G	99690461	3	3	706	1	0	0	0	0	1	0	0	0	3646	101	4	3	248	3	CNTN5	11	99690461	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	6172575	99690461	35316055	32	44368											
KDM2B	84678	ucsc.edu	37	12	121891003	121891003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	121891003	A	G	121891003	3	3	706	1	0	0	0	0	1	0	0	0	8132	159	6	3	2227	3	KDM2B	12	121891003	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10		121891003	11960892	33	44369											
MYH7	4625	broad.mit.edu;mdanderson.org	37	14	23892897	23892897	+	Missense_Mutation	SNP	A	A	T	rs140244068	alternate_allele	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	23892897	A	T	23892897	3	4	706	1	0	0	0	0	1	0	0	0	10046	214	8	5	2917	5	MYH7	14	23892897	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10		23892897	83456643	34	44370											
SOS2	6655	mdanderson.org;bcgsc.ca	37	14	50626363	50626363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	50626363	A	T	50626363	3	4	706	1	0	0	0	0	1	0	0	0	14950	388	14	5	2416	5	SOS2	14	50626363	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	26733466	50626363	56723177	35	44371											
SOS2	6655	broad.mit.edu;mdanderson.org	37	14	50626456	50626456	+	Silent	SNP	T	T	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	50626456	T	A	50626456	2	1	706	1	0	0	0	0	0	0	0	1	14950	1393	49	5		5	SOS2	14	50626456	Silent	SNP	T	TCGA-KN-8431-01A-11D-2310-10	93	50626456	56723084	36	44372											
CHAC1	79094	broad.mit.edu	37	15	41247647	41247647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	41247647	A	G	41247647	3	3	706	1	0	0	0	0	1	0	0	0	3310	304	11	3	480	3	CHAC1	15	41247647	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10		41247647	61283745	37	44373											
CDH11	1009	hgsc.bcm.edu	37	16	65006841	65006841	+	Silent	SNP	G	G	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	65006841	G	T	65006841	2	4	706	1	0	0	0	0	0	0	0	1	3099	987	35	4		4	CDH11	16	65006841	Silent	SNP	G	TCGA-KN-8431-01A-11D-2310-10		65006841	25347912	38	44374											
ZFHX3	463	mdanderson.org	37	16	72991715	72991715	+	Missense_Mutation	SNP	A	A	G	rs4788682	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	72991715	A	G	72991715	3	3	706	1	0	0	0	0	1	0	0	0	17646	159	6	3	8817	3	ZFHX3	16	72991715	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	7984874	72991715	17363038	39	44375											
ACSF3	197322	broad.mit.edu;bcgsc.ca	37	16	89167160	89167160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	89167160	C	T	89167160	3	4	706	1	0	0	0	0	1	0	0	0	176	768	27	1	73	1	ACSF3	16	89167160	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	16175445	89167160	1187593	40	44376											
TP53	7157	broad.mit.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	7578212	G	A	7578212	4	1	706	1	0	0	0	0	0	1	0	0	16393	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10		7578212	73616998	41	44377											
RAI1	10743	ucsc.edu	37	17	17712752	17712752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	17712752	A	G	17712752	3	3	706	1	0	0	0	0	1	0	0	0	13020	86	3	3	5718	3	RAI1	17	17712752	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	10134540	17712752	63482458	42	44378											
HNF1B	6928	broad.mit.edu;hgsc.bcm.edu	37	17	36099508	36099510	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	-	36099510	TTG	-	36099508	7	5	706	1	0	1	0	1	0	0	0	0	7259	1609	56	0	1238	0	HNF1B	17	36099508	In_Frame_Del	DEL	TTG	TCGA-KN-8431-01A-11D-2310-10	18386756	36099508	45095702	43	44379	613	2									
HNF1B	6928	bcgsc.ca	37	17	36099509	36099511	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	-	36099511	TTG	-	36099509	7	5	706	1	0	1	0	1	0	0	0	0	7259	1821	63	0	1239	0	HNF1B	17	36099509	In_Frame_Del	DEL	TTG	TCGA-KN-8431-01A-11D-2310-10	1	36099509	45095701	44	44380	613	2									
UBTF	7343	broad.mit.edu	37	17	42289365	42289365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	C	42289365	T	C	42289365	3	2	706	1	0	0	0	0	1	0	0	0	16921	1559	54	3	1565	3	UBTF	17	42289365	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10	6189856	42289365	38905845	45	44381											
ZACN	353174	ucsc.edu	37	17	74075997	74075997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	G	74075997	A	G	74075997	3	3	706	1	0	0	0	0	1	0	0	0	17522	43	2	3	310	3	ZACN	17	74075997	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	31786632	74075997	7119213	46	44382											
AZI1	22994	broad.mit.edu	37	17	79164828	79164828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	C	79164828	T	C	79164828	3	2	706	1	0	0	0	0	1	0	0	0	1240	1551	54	3	436	3	AZI1	17	79164828	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10	5088831	79164828	2030382	47	44383											
INSL3	3640	mdanderson.org	37	19	17932289	17932289	+	Silent	SNP	C	C	T	rs2286663	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	17932289	C	T	17932289	2	4	706	1	0	0	0	0	0	0	0	1	7774	755	27	1		1	INSL3	19	17932289	Silent	SNP	C	TCGA-KN-8431-01A-11D-2310-10		17932289	41196694	48	44384											
DLL3	10683	broad.mit.edu	37	19	39994863	39994863	+	Missense_Mutation	SNP	G	G	A	rs139297205		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	39994863	G	A	39994863	3	1	706	1	0	0	0	0	1	0	0	0	4569	1117	39	1	823	1	DLL3	19	39994863	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	22062574	39994863	19134120	49	44385											
DYRK1B	9149	broad.mit.edu	37	19	40321175	40321176	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	C	40321176	-	C	40321175	7	5	706	1	0	1	1	0	0	0	0	0	4857	1203	42	0	1709	0	DYRK1B	19	40321175	Frame_Shift_Ins	INS	-	TCGA-KN-8431-01A-11D-2310-10	326312	40321175	18807808	50	44386											
ZNF180	7733	broad.mit.edu	37	19	44980907	44980907	+	Silent	SNP	T	T	C	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	C	44980907	T	C	44980907	2	2	706	1	0	0	0	0	0	0	0	1	17760	1780	62	3		3	ZNF180	19	44980907	Silent	SNP	T	TCGA-KN-8431-01A-11D-2310-10	4659732	44980907	14148076	51	44387											
SRC	6714	broad.mit.edu;bcgsc.ca	37	20	36022638	36022638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	36022638	C	T	36022638	3	4	706	1	0	0	0	0	1	0	0	0	15146	623	22	2	525	2	SRC	20	36022638	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10		36022638	27002882	52	44388											
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	21	41684190	41684190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	41684190	G	A	41684190	3	1	706	1	0	0	0	0	1	0	0	0	4770	1145	40	1	4258	1	DSCAM	21	41684190	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10		41684190	6445705	53	44389											
HMGXB4	10042	broad.mit.edu	37	22	35661575	35661576	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	-	35661576	AG	-	35661575	7	5	706	1	0	1	0	1	0	0	0	0	7246	69	3	0	1208	0	HMGXB4	22	35661575	Frame_Shift_Del	DEL	AG	TCGA-KN-8431-01A-11D-2310-10		35661575	15642991	54	44390											
FAM47C	442444	mdanderson.org	37	X	37028209	37028209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	A	37028209	G	A	37028209	3	1	706	1	0	0	0	0	1	0	0	0	5578	1058	37	1	1728	1	FAM47C	23	37028209	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10		37028209	118242351	55	44391											
WAS	7454	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	48545247	48545247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	48545247	C	T	48545247	3	4	706	1	0	0	0	0	1	0	0	0	17263	652	23	1	663	1	WAS	23	48545247	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	11517038	48545247	106725313	56	44392											
ZDHHC9	51114	bcgsc.ca	37	X	128945410	128945410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3	T	128945410	C	T	128945410	3	4	706	1	0	0	0	0	1	0	0	0	17634	835	29	2	253	2	ZDHHC9	23	128945410	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	80400163	128945410	26325150	57	44393											
TMEM51	55092	broad.mit.edu	37	1	15545898	15545898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	15545898	A	T	15545898	3	4	707	1	0	0	0	0	1	0	0	0	16189	14	1	5	427	5	TMEM51	1	15545898	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		15545898	233704723	1	44394											
IGSF21	84966	broad.mit.edu;mdanderson.org	37	1	18692186	18692186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	18692186	C	T	18692186	3	4	707	1	0	0	0	0	1	0	0	0	7606	536	19	1	1032	1	IGSF21	1	18692186	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	3146288	18692186	230558435	2	44395											
INADL	10207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	62380292	62380292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	62380292	A	G	62380292	3	3	707	1	0	0	0	0	1	0	0	0	7738	101	4	3	3624	3	INADL	1	62380292	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	43688106	62380292	186870329	3	44396											
LEPR	3953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	66102278	66102278	+	Missense_Mutation	SNP	T	T	G	rs34130975	bycluster;byfrequency;alternate_allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	66102278	T	G	66102278	3	3	707	1	0	0	0	0	1	0	0	0	8735	1403	49	5	3378	5	LEPR	1	66102278	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	3721986	66102278	183148343	4	44397											
HIPK1	204851	hgsc.bcm.edu;bcgsc.ca	37	1	114483037	114483037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	114483037	C	T	114483037	3	4	707	1	0	0	0	0	1	0	0	0	7123	594	21	2	34	2	HIPK1	1	114483037	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	48380759	114483037	134767584	5	44398											
ANP32E	81611	mdanderson.org	37	1	150199057	150199057	+	Silent	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	150199057	C	T	150199057	2	4	707	1	0	0	0	0	0	0	0	1	709	680	24	2		2	ANP32E	1	150199057	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	35716020	150199057	99051564	6	44399											
FLAD1	80308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	154965424	154965424	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	154965424	C	G	154965424	3	3	707	1	0	0	0	0	1	0	0	0	5927	680	24	4	1845	4	FLAD1	1	154965424	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	4766367	154965424	94285197	7	44400											
ARHGEF2	9181	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	155932493	155932493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	155932493	G	A	155932493	3	1	707	1	0	0	0	0	1	0	0	0	903	1087	38	1	2024	1	ARHGEF2	1	155932493	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	967069	155932493	93318128	8	44401											
MR1	3140	mdanderson.org;bcgsc.ca	37	1	181021437	181021437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	181021437	C	A	181021437	3	1	707	1	0	0	0	0	1	0	0	0	9759	797	28	4	685	4	MR1	1	181021437	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	25088944	181021437	68229184	9	44402											
RGL1	23179	broad.mit.edu	37	1	183885724	183885724	+	Silent	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	183885724	G	A	183885724	2	1	707	1	0	0	0	0	0	0	0	1	13289	1132	40	1		1	RGL1	1	183885724	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	2864287	183885724	65364897	10	44403											
KIF21B	23046	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	200943959	200943959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	200943959	G	A	200943959	3	1	707	1	0	0	0	0	1	0	0	0	8296	1087	38	1	224	1	KIF21B	1	200943959	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	17058235	200943959	48306662	11	44404											
SUSD4	55061	hgsc.bcm.edu;ucsc.edu	37	1	223465989	223465989	+	Silent	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	223465989	G	A	223465989	2	1	707	1	0	0	0	0	0	0	0	1	15422	1049	37	1		1	SUSD4	1	223465989	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	22522030	223465989	25784632	12	44405											
CAPN2	824	broad.mit.edu	37	1	223936794	223936794	+	Silent	SNP	G	G	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	223936794	G	C	223936794	2	2	707	1	0	0	0	0	0	0	0	1	2629	1190	42	4		4	CAPN2	1	223936794	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	470805	223936794	25313827	13	44406											
OBSCN	84033	broad.mit.edu	37	1	228432096	228432096	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	228432096	A	-	228432096	7	5	707	1	0	1	0	1	0	0	0	0	10819	188	7	0	3343	0	OBSCN	1	228432096	Frame_Shift_Del	DEL	A	TCGA-KN-8432-01A-11D-2310-10	4495302	228432096	20818525	14	44407											
HNRNPU	3192	broad.mit.edu	37	1	245025801	245025803	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	245025803	TCT	-	245025801	7	5	707	1	0	1	0	1	0	0	0	0	7280	1435	50	0	1686	0	HNRNPU	1	245025801	In_Frame_Del	DEL	TCT	TCGA-KN-8432-01A-11D-2310-10	16593705	245025801	4224820	15	44408											
CNST	163882	broad.mit.edu	37	1	246811292	246811292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	246811292	A	G	246811292	3	3	707	1	0	0	0	0	1	0	0	0	3636	304	11	3	1819	3	CNST	1	246811292	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	1785491	246811292	2439329	16	44409											
CAPN13	92291	ucsc.edu;bcgsc.ca	37	2	30953639	30953639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	30953639	A	G	30953639	3	3	707	1	0	0	0	0	1	0	0	0	2628	275	10	3	16	3	CAPN13	2	30953639	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		30953639	212245734	17	44410											
XDH	7498	broad.mit.edu	37	2	31590910	31590910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	31590910	T	C	31590910	3	2	707	1	0	0	0	0	1	0	0	0	17438	1725	60	3	1955	3	XDH	2	31590910	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	637271	31590910	211608463	18	44411											
HNRPLL	92906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	38818735	38818735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	38818735	C	A	38818735	3	1	707	1	0	0	0	0	1	0	0	0	7284	855	30	4	1431	4	HNRPLL	2	38818735	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	7227825	38818735	204380638	19	44412											
TUBA3D	113457	mdanderson.org	37	2	132236921	132236921	+	Silent	SNP	G	G	A	rs4065352	byfrequency	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	132236921	G	A	132236921	2	1	707	1	0	0	0	0	0	0	0	1	16759	1103	39	1		1	TUBA3D	2	132236921	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	93418186	132236921	110962452	20	44413											
MCM6	4175	broad.mit.edu	37	2	136614368	136614368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	136614368	T	C	136614368	3	2	707	1	0	0	0	0	1	0	0	0	9398	1493	52	3	937	3	MCM6	2	136614368	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	4377447	136614368	106585005	21	44414											
LRP2	4036	broad.mit.edu	37	2	169999257	169999257	+	Silent	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	169999257	T	C	169999257	2	2	707	1	0	0	0	0	0	0	0	1	8963	1664	58	3		3	LRP2	2	169999257	Silent	SNP	T	TCGA-KN-8432-01A-11D-2310-10	33384889	169999257	73200116	22	44415											
ZNF142	7701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	219513452	219513452	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	219513452	C	G	219513452	3	3	707	1	0	0	0	0	1	0	0	0	17743	912	32	4	3904	4	ZNF142	2	219513452	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	49514195	219513452	23685921	23	44416											
OBSL1	23363	broad.mit.edu	37	2	220432822	220432822	+	Missense_Mutation	SNP	C	C	T	rs2292359		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	220432822	C	T	220432822	3	4	707	1	0	0	0	0	1	0	0	0	10820	893	31	1	4685	1	OBSL1	2	220432822	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	919370	220432822	22766551	24	44417											
ITM2C	81618	bcgsc.ca	37	2	231741668	231741668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	231741668	C	T	231741668	3	4	707	1	0	0	0	0	1	0	0	0	7921	681	24	2	561	2	ITM2C	2	231741668	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	11308846	231741668	11457705	25	44418											
ALPPL2	251	hgsc.bcm.edu;mdanderson.org	37	2	233274094	233274094	+	Silent	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	233274094	C	T	233274094	2	4	707	1	0	0	0	0	0	0	0	1	549	547	19	1		1	ALPPL2	2	233274094	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	1532426	233274094	9925279	26	44419											
UGT1A1	54658	bcgsc.ca	37	2	234669525	234669542	+	In_Frame_Del	DEL	CTCCTCTCATTCAGATCA	CTCCTCTCATTCAGATCA	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	CTCCTCTCATTCAGATCA	CTCCTCTCATTCAGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	234669542	CTCCTCTCATTCAGATCA	-	234669525	7	5	707	1	0	1	0	1	0	0	0	0	16956	1551	54	0	594	0	UGT1A1	2	234669525	In_Frame_Del	DEL	CTCCTCTCATTCAGATCA	TCGA-KN-8432-01A-11D-2310-10	1395431	234669525	8529848	27	44420											
VHL	7428	ucsc.edu;bcgsc.ca	37	3	10183608	10183608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	10183608	A	G	10183608	3	3	707	1	0	0	0	0	1	0	0	0	17174	246	9	3	79	3	VHL	3	10183608	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		10183608	187838822	28	44421											
ABHD14A	25864	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	52014444	52014444	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	52014444	A	C	52014444	3	2	707	1	0	0	0	0	1	0	0	0	79	159	6	5	447	5	ABHD14A	3	52014444	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	41830836	52014444	146007986	29	44422											
SNTN	132203	broad.mit.edu;bcgsc.ca	37	3	63649637	63649637	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	63649637	A	T	63649637	4	4	707	1	0	0	0	0	0	1	0	0	14889	180	7	5	324	5	SNTN	3	63649637	Nonsense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	11635193	63649637	134372793	30	44423											
OR5H14	403273	mdanderson.org	37	3	97868588	97868588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	97868588	A	G	97868588	3	3	707	1	0	0	0	0	1	0	0	0	11167	449	16	3	361	3	OR5H14	3	97868588	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	34218951	97868588	100153842	31	44424											
MCM2	4171	broad.mit.edu	37	3	127323460	127323460	+	Silent	SNP	C	C	T	rs186022338	by1000genomes	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	127323460	C	T	127323460	2	4	707	1	0	0	0	0	0	0	0	1	9393	755	27	1		1	MCM2	3	127323460	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	29454872	127323460	70698970	32	44425											
IGSF10	285313	broad.mit.edu	37	3	151163769	151163769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	151163769	T	C	151163769	3	2	707	1	0	0	0	0	1	0	0	0	7604	1725	60	3	3931	3	IGSF10	3	151163769	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	23840309	151163769	46858661	33	44426											
MUC4	4585	mdanderson.org	37	3	195506091	195506091	+	Silent	SNP	A	A	C	rs74941663		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	195506091	A	C	195506091	2	2	707	1	0	0	0	0	0	0	0	1	9985	175	7	5		5	MUC4	3	195506091	Silent	SNP	A	TCGA-KN-8432-01A-11D-2310-10	44342322	195506091	2516339	34	44427											
MUC4	4585	mdanderson.org	37	3	195507221	195507221	+	Missense_Mutation	SNP	G	G	A	rs200315207		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	195507221	G	A	195507221	3	1	707	1	0	0	0	0	1	0	0	0	9985	1232	43	2		2	MUC4	3	195507221	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	1130	195507221	2515209	35	44428											
MUC4	4585	mdanderson.org	37	3	195510162	195510162	+	Silent	SNP	T	T	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	195510162	T	G	195510162	2	3	707	1	0	0	0	0	0	0	0	1	9985	1567	55	5		5	MUC4	3	195510162	Silent	SNP	T	TCGA-KN-8432-01A-11D-2310-10	2941	195510162	2512268	36	44429											
FRYL	285527	broad.mit.edu;mdanderson.org	37	4	48513002	48513002	+	Splice_Site	SNP	C	C	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	48513002	C	G	48513002	5	3	707	1	0	0	0	0	0	0	1	0	6071	927	32	4	924	4	FRYL	4	48513002	Splice_Site	SNP	C	TCGA-KN-8432-01A-11D-2310-10		48513002	142641274	37	44430											
LRRC66	339977	broad.mit.edu;mdanderson.org	37	4	52861445	52861445	+	Silent	SNP	G	G	A	rs187026269		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	52861445	G	A	52861445	2	1	707	1	0	0	0	0	0	0	0	1	9025	1103	39	1		1	LRRC66	4	52861445	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	4348443	52861445	138292831	38	44431											
MUC7	4589	broad.mit.edu	37	4	71347311	71347311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	71347311	C	T	71347311	3	4	707	1	0	0	0	0	1	0	0	0	9988	623	22	2	856	2	MUC7	4	71347311	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	18485866	71347311	119806965	39	44432											
MTTP	4547	broad.mit.edu	37	4	100503089	100503091	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	ATG	ATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	100503091	ATG	-	100503089	7	5	707	1	0	1	0	1	0	0	0	0	9971	101	4	0	95	0	MTTP	4	100503089	In_Frame_Del	DEL	ATG	TCGA-KN-8432-01A-11D-2310-10	29155778	100503089	90651187	40	44433											
NPY1R	4886	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	164247528	164247528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	164247528	G	C	164247528	3	2	707	1	0	0	0	0	1	0	0	0	10615	1203	42	4	983	4	NPY1R	4	164247528	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	63744439	164247528	26906748	41	44434											
TKTL2	84076	broad.mit.edu	37	4	164393866	164393866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	164393866	C	A	164393866	3	1	707	1	0	0	0	0	1	0	0	0	15948	478	17	4	863	4	TKTL2	4	164393866	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	146338	164393866	26760410	42	44435											
SDHA	6389	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	235341	235341	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	235341	A	T	235341	3	4	707	1	0	0	0	0	1	0	0	0	13976	217	8	5	1181	5	SDHA	5	235341	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		235341	180679919	43	44436											
ANKHD1-EIF4EBP3	404734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	139928655	139928655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	139928655	A	G	139928655	3	3	707	1	0	0	0	0	1	0	0	0	629	333	12	3	7982	3	ANKHD1-EIF4EBP3	5	139928655	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	139693314	139928655	40986605	44	44437											
ZNF354A	6940	mdanderson.org	37	5	178139379	178139380	+	Missense_Mutation	DNP	CC	CC	GT	rs199632980		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	GT	178139380	CC	GT	178139379	3	3	707	1	0	0	0	0	1	0	0	0	17876	842	30	4	321	4	ZNF354A	5	178139379	Missense_Mutation	DNP	CC	TCGA-KN-8432-01A-11D-2310-10	38210724	178139379	2775881	45	44438	614	2									
ZNF354A	6940	mdanderson.org	37	5	178139385	178139385	+	Silent	SNP	C	C	T	rs199620032	byfrequency	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	178139385	C	T	178139385	2	4	707	1	0	0	0	0	0	0	0	1	17876	564	20	2		2	ZNF354A	5	178139385	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	6	178139385	2775875	46	44439	614	2									
HLA-DQA2	3118	mdanderson.org	37	6	32714168	32714168	+	Silent	SNP	A	A	G	rs9276437	byfrequency	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	32714168	A	G	32714168	2	3	707	1	0	0	0	0	0	0	0	1	7212	446	16	3		3	HLA-DQA2	6	32714168	Silent	SNP	A	TCGA-KN-8432-01A-11D-2310-10		32714168	138400899	47	44440											
MTCH1	23787	broad.mit.edu;hgsc.bcm.edu	37	6	36938223	36938223	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	36938223	G	-	36938223	7	5	707	1	0	1	0	1	0	0	0	0	9920	987	35	0	200	0	MTCH1	6	36938223	Frame_Shift_Del	DEL	G	TCGA-KN-8432-01A-11D-2310-10	4224055	36938223	134176844	48	44441	615	2									
MTCH1	23787	bcgsc.ca	37	6	36938224	36938224	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	36938224	G	-	36938224	7	5	707	1	0	1	0	1	0	0	0	0	9920	1232	43	0	201	0	MTCH1	6	36938224	Frame_Shift_Del	DEL	G	TCGA-KN-8432-01A-11D-2310-10	1	36938224	134176843	49	44442	615	2									
RNF8	9025	bcgsc.ca	37	6	37336717	37336717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	37336717	A	G	37336717	3	3	707	1	0	0	0	0	1	0	0	0	13513	304	11	3	708	3	RNF8	6	37336717	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	398493	37336717	133778350	50	44443											
KCNQ5	56479	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	6	73787542	73787542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	73787542	G	T	73787542	3	4	707	1	0	0	0	0	1	0	0	0	8093	1377	48	4	868	4	KCNQ5	6	73787542	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	36450825	73787542	97327525	51	44444											
LAMA4	3910	broad.mit.edu;mdanderson.org	37	6	112480083	112480083	+	Splice_Site	SNP	C	C	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	112480083	C	G	112480083	5	3	707	1	0	0	0	0	0	0	1	0	8615	927	32	4	3907	4	LAMA4	6	112480083	Splice_Site	SNP	C	TCGA-KN-8432-01A-11D-2310-10	38692541	112480083	58634984	52	44445											
MED23	9439	broad.mit.edu	37	6	131919846	131919846	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	131919846	T	-	131919846	7	5	707	1	0	1	0	1	0	0	0	0	9448	1493	52	0	1881	0	MED23	6	131919846	Frame_Shift_Del	DEL	T	TCGA-KN-8432-01A-11D-2310-10	19439763	131919846	39195221	53	44446											
TAAR2	9287	broad.mit.edu	37	6	132945376	132945376	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	132945376	G	C	132945376	3	2	707	1	0	0	0	0	1	0	0	0	15502	1281	45	4	1024	4	TAAR2	6	132945376	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	1025530	132945376	38169691	54	44447											
AHR	196	hgsc.bcm.edu;ucsc.edu	37	7	17369578	17369578	+	Silent	SNP	T	T	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	17369578	T	A	17369578	2	1	707	1	0	0	0	0	0	0	0	1	416	1567	55	5		5	AHR	7	17369578	Silent	SNP	T	TCGA-KN-8432-01A-11D-2310-10		17369578	141769085	55	44448											
VWC2	375567	ucsc.edu	37	7	49815089	49815089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	49815089	T	C	49815089	3	2	707	1	0	0	0	0	1	0	0	0	17255	1580	55	3	60	3	VWC2	7	49815089	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	32445511	49815089	109323574	56	44449											
IKZF1	10320	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	7	50444370	50444370	+	Silent	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	50444370	C	T	50444370	2	4	707	1	0	0	0	0	0	0	0	1	7621	697	25	2		2	IKZF1	7	50444370	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	629281	50444370	108694293	57	44450											
GTF2IRD2B	389524	hgsc.bcm.edu	37	7	74563945	74563945	+	Silent	SNP	C	C	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	74563945	C	A	74563945	2	1	707	1	0	0	0	0	0	0	0	1	6877	581	21	4		4	GTF2IRD2B	7	74563945	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	24119575	74563945	84574718	58	44451											
MLL3	58508	mdanderson.org	37	7	151962294	151962294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	151962294	G	A	151962294	3	1	707	1	0	0	0	0	1	0	0	0	9629	1101	38	1	13930	1	MLL3	7	151962294	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	77398349	151962294	7176369	59	44452											
XKR6	286046	broad.mit.edu	37	8	10755515	10755515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	10755515	A	C	10755515	3	2	707	1	0	0	0	0	1	0	0	0	17447	449	16	5	56	5	XKR6	8	10755515	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		10755515	135608507	60	44453											
INTS10	55174	broad.mit.edu	37	8	19680921	19680921	+	Silent	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	19680921	T	C	19680921	2	2	707	1	0	0	0	0	0	0	0	1	7783	1509	53	3		3	INTS10	8	19680921	Silent	SNP	T	TCGA-KN-8432-01A-11D-2310-10	8925406	19680921	126683101	61	44454											
KIAA1429	25962	broad.mit.edu;bcgsc.ca	37	8	95539559	95539559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	95539559	C	T	95539559	3	4	707	1	0	0	0	0	1	0	0	0	8238	835	29	2	4647	2	KIAA1429	8	95539559	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	75858638	95539559	50824463	62	44455											
STK3	6788	ucsc.edu	37	8	99779547	99779547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	99779547	C	T	99779547	3	4	707	1	0	0	0	0	1	0	0	0	15307	768	27	1	1351	1	STK3	8	99779547	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	4239988	99779547	46584475	63	44456											
VPS13B	157680	ucsc.edu;bcgsc.ca	37	8	100533136	100533136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	100533136	C	T	100533136	3	4	707	1	0	0	0	0	1	0	0	0	17202	710	25	2	5026	2	VPS13B	8	100533136	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	753589	100533136	45830886	64	44457											
TG	7038	ucsc.edu	37	8	133911147	133911147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	133911147	T	C	133911147	3	2	707	1	0	0	0	0	1	0	0	0	15825	1580	55	3	3376	3	TG	8	133911147	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	33378011	133911147	12452875	65	44458											
BAI1	575	ucsc.edu;bcgsc.ca	37	8	143603450	143603450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	143603450	G	A	143603450	3	1	707	1	0	0	0	0	1	0	0	0	1298	1087	38	1	3227	1	BAI1	8	143603450	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	9692303	143603450	2760572	66	44459											
TYRP1	7306	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	12695641	12695641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	12695641	G	A	12695641	3	1	707	1	0	0	0	0	1	0	0	0	16828	1232	43	2	518	2	TYRP1	9	12695641	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10		12695641	128517790	67	44460											
PRSS3	5646	mdanderson.org	37	9	33797978	33797978	+	Missense_Mutation	SNP	G	G	A	rs145485932		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	33797978	G	A	33797978	3	1	707	1	0	0	0	0	1	0	0	0	12632	1145	40	1	577	1	PRSS3	9	33797978	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	21102337	33797978	107415453	68	44461											
TLE1	7088	broad.mit.edu;hgsc.bcm.edu	37	9	84303155	84303155	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	84303155	T	A	84303155	3	1	707	1	0	0	0	0	1	0	0	0	15950	1435	50	5	2391	5	TLE1	9	84303155	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	50505177	84303155	56910276	69	44462											
CORO2A	7464	broad.mit.edu;bcgsc.ca	37	9	100888937	100888937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	100888937	T	C	100888937	3	2	707	1	0	0	0	0	1	0	0	0	3758	1551	54	3	245	3	CORO2A	9	100888937	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	16585782	100888937	40324494	70	44463											
RAD23B	5887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	110068852	110068852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	110068852	A	T	110068852	3	4	707	1	0	0	0	0	1	0	0	0	12996	420	15	5	435	5	RAD23B	9	110068852	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	9179915	110068852	31144579	71	44464											
PITRM1	10531	bcgsc.ca	37	10	3186494	3186494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	3186494	T	C	3186494	3	2	707	1	0	0	0	0	1	0	0	0	11960	1609	56	3	615	3	PITRM1	10	3186494	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10		3186494	132348253	72	44465											
FAM21C	253725	broad.mit.edu;mdanderson.org	37	10	46248632	46248632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	46248632	A	G	46248632	3	3	707	1	0	0	0	0	1	0	0	0	5546	275	10	3	1177	3	FAM21C	10	46248632	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	43062138	46248632	89286115	73	44466											
PLCE1	51196	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	10	95891977	95891977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	95891977	C	T	95891977	3	4	707	1	0	0	0	0	1	0	0	0	12041	913	32	2	1545	2	PLCE1	10	95891977	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	49643345	95891977	39642770	74	44467											
UBQLN3	50613	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	5530008	5530008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	5530008	T	C	5530008	3	2	707	1	0	0	0	0	1	0	0	0	16910	1406	49	3	1190	3	UBQLN3	11	5530008	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10		5530008	129476508	75	44468											
OR52N1	79473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	5809593	5809593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	5809593	G	A	5809593	3	1	707	1	0	0	0	0	1	0	0	0	11134	942	33	2	511	2	OR52N1	11	5809593	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	279585	5809593	129196923	76	44469											
OR1S2	219958	mdanderson.org	37	11	57970981	57970981	+	Missense_Mutation	SNP	C	C	T	rs11229278	byfrequency	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	57970981	C	T	57970981	3	4	707	1	0	0	0	0	1	0	0	0	10980	478	17	2	307	2	OR1S2	11	57970981	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	52161388	57970981	77035535	77	44470											
FERMT3	83706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	63988121	63988121	+	Nonsense_Mutation	SNP	C	C	T	rs121918295	bycluster	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	63988121	C	T	63988121	4	4	707	1	0	0	0	0	0	1	0	0	5826	760	27	1	1579	1	FERMT3	11	63988121	Nonsense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	6017140	63988121	71018395	78	44471											
ATG2A	23130	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	64676833	64676833	+	Missense_Mutation	SNP	T	T	C	rs148849835	alternate_allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	64676833	T	C	64676833	3	2	707	1	0	0	0	0	1	0	0	0	1093	1406	49	3	3810	3	ATG2A	11	64676833	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	688712	64676833	70329683	79	44472											
FLI1	2313	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	11	128679073	128679073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	128679073	C	T	128679073	3	4	707	1	0	0	0	0	1	0	0	0	5931	652	23	1	833	1	FLI1	11	128679073	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	64002240	128679073	6327443	80	44473											
TAS2R30	259293	broad.mit.edu	37	12	11286136	11286137	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	11286137	-	A	11286136	7	5	707	1	0	1	1	0	0	0	0	0	15585	465	17	0	255	0	TAS2R30	12	11286136	Frame_Shift_Ins	INS	-	TCGA-KN-8432-01A-11D-2310-10		11286136	122565759	81	44474											
SLC38A1	81539	broad.mit.edu	37	12	46633473	46633473	+	Silent	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	46633473	A	G	46633473	2	3	707	1	0	0	0	0	0	0	0	1	14614	262	10	3		3	SLC38A1	12	46633473	Silent	SNP	A	TCGA-KN-8432-01A-11D-2310-10	35347337	46633473	87218422	82	44475											
WNT1	7471	broad.mit.edu;hgsc.bcm.edu	37	12	49373357	49373365	+	In_Frame_Del	DEL	CTGATACGC	CTGATACGC	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	CTGATACGC	CTGATACGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	49373365	CTGATACGC	-	49373357	7	5	707	1	0	1	0	1	0	0	0	0	17393	912	32	0	217	0	WNT1	12	49373357	In_Frame_Del	DEL	CTGATACGC	TCGA-KN-8432-01A-11D-2310-10	2739884	49373357	84478538	83	44476	616	2									
WNT1	7471	bcgsc.ca	37	12	49373358	49373366	+	In_Frame_Del	DEL	CTGATACGC	CTGATACGC	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	CTGATACGC	CTGATACGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	49373366	CTGATACGC	-	49373358	7	5	707	1	0	1	0	1	0	0	0	0	17393	1580	55	0	218	0	WNT1	12	49373358	In_Frame_Del	DEL	CTGATACGC	TCGA-KN-8432-01A-11D-2310-10	1	49373358	84478537	84	44477	616	2									
KRT6B	3854	mdanderson.org	37	12	52845665	52845665	+	Silent	SNP	G	G	T	rs419374	bycluster;byfrequency;by2hit2allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	52845665	G	T	52845665	2	4	707	1	0	0	0	0	0	0	0	1	8488	958	34	4		4	KRT6B	12	52845665	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	3472307	52845665	81006230	85	44478											
N4BP2L2	10443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	13	33016882	33016882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	33016882	A	C	33016882	3	2	707	1	0	0	0	0	1	0	0	0	10119	14	1	5	478	5	N4BP2L2	13	33016882	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		33016882	82152996	86	44479											
EPSTI1	94240	ucsc.edu;bcgsc.ca	37	13	43469222	43469222	+	Nonsense_Mutation	SNP	G	G	A	rs201385523		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	43469222	G	A	43469222	4	1	707	1	0	0	0	0	0	1	0	0	5200	1124	39	1	373	1	EPSTI1	13	43469222	Nonsense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	10452340	43469222	71700656	87	44480											
PCDH8	5100	broad.mit.edu	37	13	53420463	53420465	+	In_Frame_Del	DEL	GGT	GGT	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	53420465	GGT	-	53420463	7	5	707	1	0	1	0	1	0	0	0	0	11524	1103	39	0	1115	0	PCDH8	13	53420463	In_Frame_Del	DEL	GGT	TCGA-KN-8432-01A-11D-2310-10	9951241	53420463	61749415	88	44481											
ESR2	2100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	64727212	64727212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	64727212	C	T	64727212	3	4	707	1	0	0	0	0	1	0	0	0	5259	884	31	1	791	1	ESR2	14	64727212	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10		64727212	42622328	89	44482											
EIF2AK4	440275	ucsc.edu	37	15	40235659	40235659	+	Silent	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	40235659	A	G	40235659	2	3	707	1	0	0	0	0	0	0	0	1	5001	69	3	3		3	EIF2AK4	15	40235659	Silent	SNP	A	TCGA-KN-8432-01A-11D-2310-10		40235659	62295733	90	44483											
SQRDL	58472	broad.mit.edu;mdanderson.org;bcgsc.ca	37	15	45954211	45954211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	45954211	C	T	45954211	3	4	707	1	0	0	0	0	1	0	0	0	15141	838	29	2	299	2	SQRDL	15	45954211	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	5718552	45954211	56577181	91	44484											
TRPM7	54822	broad.mit.edu;mdanderson.org	37	15	50884111	50884111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	50884111	C	T	50884111	3	4	707	1	0	0	0	0	1	0	0	0	16603	478	17	2	1332	2	TRPM7	15	50884111	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	4929900	50884111	51647281	92	44485											
SLTM	79811	mdanderson.org	37	15	59191919	59191919	+	Silent	SNP	C	C	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	59191919	C	A	59191919	2	1	707	1	0	0	0	0	0	0	0	1	14767	813	29	4		4	SLTM	15	59191919	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	8307808	59191919	43339473	93	44486											
CD276	80381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	73995325	73995325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	73995325	G	T	73995325	3	4	707	1	0	0	0	0	1	0	0	0	2994	1261	44	4	641	4	CD276	15	73995325	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	14803406	73995325	28536067	94	44487											
ZNF592	9640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	85334093	85334093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	85334093	A	G	85334093	3	3	707	1	0	0	0	0	1	0	0	0	18034	449	16	3	2384	3	ZNF592	15	85334093	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	11338768	85334093	17197299	95	44488											
SOX8	30812	ucsc.edu	37	16	1034902	1034902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	1034902	A	G	1034902	3	3	707	1	0	0	0	0	1	0	0	0	14970	275	10	3	867	3	SOX8	16	1034902	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		1034902	89319851	96	44489											
ARL6IP1	23204	hgsc.bcm.edu	37	16	18806888	18806888	+	Silent	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	18806888	C	T	18806888	2	4	707	1	0	0	0	0	0	0	0	1	942	796	28	2		2	ARL6IP1	16	18806888	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	17771986	18806888	71547865	97	44490											
NLRC5	84166	ucsc.edu;bcgsc.ca	37	16	57057697	57057697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	57057697	G	T	57057697	3	4	707	1	0	0	0	0	1	0	0	0	10477	1217	42	4	366	4	NLRC5	16	57057697	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	38250809	57057697	33297056	98	44491											
CALB2	794	broad.mit.edu;ucsc.edu	37	16	71419536	71419536	+	Silent	SNP	C	C	T	rs139080757		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	71419536	C	T	71419536	2	4	707	1	0	0	0	0	0	0	0	1	2576	547	19	1		1	CALB2	16	71419536	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	14361839	71419536	18935217	99	44492											
FANCA	2175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	89838101	89838101	+	Silent	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	89838101	C	T	89838101	2	4	707	1	0	0	0	0	0	0	0	1	5669	796	28	2		2	FANCA	16	89838101	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	18418565	89838101	516652	100	44493											
SUPT6H	6830	hgsc.bcm.edu;bcgsc.ca	37	17	27028052	27028052	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	27028052	C	T	27028052	4	4	707	1	0	0	0	0	0	1	0	0	15412	827	29	2	5038	2	SUPT6H	17	27028052	Nonsense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10		27028052	54167158	101	44494											
ERBB2	2064	bcgsc.ca	37	17	37881117	37881117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	37881117	C	T	37881117	3	4	707	1	0	0	0	0	1	0	0	0	5208	536	19	1	2524	1	ERBB2	17	37881117	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	10853065	37881117	43314093	102	44495											
RAPGEFL1	51195	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	17	38346943	38346943	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	38346943	C	T	38346943	4	4	707	1	0	0	0	0	0	1	0	0	13062	644	23	1	668	1	RAPGEFL1	17	38346943	Nonsense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	465826	38346943	42848267	103	44496											
STAT5B	6777	broad.mit.edu	37	17	40364022	40364022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	40364022	A	G	40364022	3	3	707	1	0	0	0	0	1	0	0	0	15281	275	10	3	731	3	STAT5B	17	40364022	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	2017079	40364022	40831188	104	44497											
SCN4A	6329	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	62021160	62021160	+	Silent	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	62021160	G	A	62021160	2	1	707	1	0	0	0	0	0	0	0	1	13933	1136	40	1		1	SCN4A	17	62021160	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	21657138	62021160	19174050	105	44498											
CCDC137	339230	broad.mit.edu;bcgsc.ca	37	17	79633801	79633801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	79633801	C	T	79633801	3	4	707	1	0	0	0	0	1	0	0	0	2773	768	27	1	7	1	CCDC137	17	79633801	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	17612641	79633801	1561409	106	44499											
MALT1	10892	broad.mit.edu	37	18	56414969	56414969	+	Silent	SNP	C	C	T	rs200126163		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	56414969	C	T	56414969	2	4	707	1	0	0	0	0	0	0	0	1	9209	883	31	1		1	MALT1	18	56414969	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10		56414969	21662279	107	44500											
ANGPTL4	51129	hgsc.bcm.edu;mdanderson.org	37	19	8429323	8429323	+	Missense_Mutation	SNP	G	G	A	rs116843064	bycluster;byfrequency;by1000genomes	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	8429323	G	A	8429323	3	1	707	1	0	0	0	0	1	0	0	0	616	1059	37	1	120	1	ANGPTL4	19	8429323	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10		8429323	50699660	108	44501											
RLN3	117579	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	14139176	14139176	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	14139176	C	T	14139176	4	4	707	1	0	0	0	0	0	1	0	0	13406	528	19	1	162	1	RLN3	19	14139176	Nonsense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	5709853	14139176	44989807	109	44502											
CAPNS1	826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	36632120	36632120	+	Silent	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	36632120	C	T	36632120	2	4	707	1	0	0	0	0	0	0	0	1	2635	816	29	2		2	CAPNS1	19	36632120	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	22492944	36632120	22496863	110	44503											
KCNN4	3783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	44276195	44276195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	44276195	C	T	44276195	3	4	707	1	0	0	0	0	1	0	0	0	8088	739	26	2	527	2	KCNN4	19	44276195	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	7644075	44276195	14852788	111	44504											
NUCB1	4924	broad.mit.edu	37	19	49425109	49425111	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	-	49425111	AGC	-	49425109	7	5	707	1	0	1	0	1	0	0	0	0	10725	72	3	0	1241	0	NUCB1	19	49425109	In_Frame_Del	DEL	AGC	TCGA-KN-8432-01A-11D-2310-10	5148914	49425109	9703874	112	44505											
KIR2DL1	3802	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	55285024	55285024	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	55285024	G	C	55285024	3	2	707	1	0	0	0	0	1	0	0	0	8323	1377	48	4	320	4	KIR2DL1	19	55285024	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	5859915	55285024	3843959	113	44506											
ZNF264	9422	broad.mit.edu	37	19	57724079	57724079	+	Silent	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	57724079	C	T	57724079	2	4	707	1	0	0	0	0	0	0	0	1	17816	668	24	2		2	ZNF264	19	57724079	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	2439055	57724079	1404904	114	44507											
SLA2	84174	broad.mit.edu;mdanderson.org;bcgsc.ca	37	20	35260999	35260999	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	35260999	T	A	35260999	3	1	707	1	0	0	0	0	1	0	0	0	14377	1565	54	5	420	5	SLA2	20	35260999	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10		35260999	27764521	115	44508											
DHX35	60625	broad.mit.edu	37	20	37621034	37621034	+	Missense_Mutation	SNP	T	T	G	rs200532343	alternate_allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	37621034	T	G	37621034	3	3	707	1	0	0	0	0	1	0	0	0	4510	1821	63	5	574	5	DHX35	20	37621034	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	2360035	37621034	25404486	116	44509											
SULF2	55959	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	46313215	46313215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	46313215	C	T	46313215	3	4	707	1	0	0	0	0	1	0	0	0	15383	768	27	1	1828	1	SULF2	20	46313215	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	8692181	46313215	16712305	117	44510											
KRTAP10-4	386672	hgsc.bcm.edu;mdanderson.org	37	21	45993747	45993747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	45993747	G	A	45993747	3	1	707	1	0	0	0	0	1	0	0	0	8518	1059	37	1	114	1	KRTAP10-4	21	45993747	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10		45993747	2136148	118	44511											
KRTAP10-6	386674	mdanderson.org	37	21	46011324	46011324	+	Missense_Mutation	SNP	T	T	C	rs1785472	by2hit2allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	C	46011324	T	C	46011324	3	2	707	1	0	0	0	0	1	0	0	0	8520	1464	51	3	59	3	KRTAP10-6	21	46011324	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	17577	46011324	2118571	119	44512											
KRTAP10-12	386685	broad.mit.edu	37	21	46117243	46117243	+	Missense_Mutation	SNP	G	G	A	rs199900483		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	46117243	G	A	46117243	3	1	707	1	0	0	0	0	1	0	0	0	8515	1087	38	1	129	1	KRTAP10-12	21	46117243	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	105919	46117243	2012652	120	44513											
PHF5A	84844	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	41863526	41863526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	41863526	G	A	41863526	3	1	707	1	0	0	0	0	1	0	0	0	11844	1087	38	1	171	1	PHF5A	22	41863526	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10		41863526	9441040	121	44514											
ODF3B	440836	hgsc.bcm.edu	37	22	50970068	50970068	+	Missense_Mutation	SNP	C	C	T	rs141953471	by1000genomes	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	50970068	C	T	50970068	3	4	707	1	0	0	0	0	1	0	0	0	10837	884	31	1	537	1	ODF3B	22	50970068	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	9106542	50970068	334498	122	44515											
EIF2S3	1968	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	24075766	24075766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	24075766	A	G	24075766	3	3	707	1	0	0	0	0	1	0	0	0	5013	275	10	3	292	3	EIF2S3	23	24075766	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		24075766	131194794	123	44516											
FAM47A	158724	bcgsc.ca	37	X	34148877	34148877	+	Missense_Mutation	SNP	C	C	G	rs5973088		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	G	34148877	C	G	34148877	3	3	707	1	0	0	0	0	1	0	0	0	5576	864	30	4	860	4	FAM47A	23	34148877	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	10073111	34148877	121121683	124	44517											
FAM47C	442444	broad.mit.edu	37	X	37028121	37028121	+	Silent	SNP	C	C	T	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	37028121	C	T	37028121	2	4	707	1	0	0	0	0	0	0	0	1	5578	842	30	2		2	FAM47C	23	37028121	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	2879244	37028121	118242439	125	44518											
MAGED2	10916	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	54837700	54837700	+	Silent	SNP	G	G	A	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	A	54837700	G	A	54837700	2	1	707	1	0	0	0	0	0	0	0	1	9191	1020	36	2		2	MAGED2	23	54837700	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	17809579	54837700	100432860	126	44519											
RBMX	27316	mdanderson.org	37	X	135960230	135960230	+	Missense_Mutation	SNP	C	C	T	rs199717308		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222	T	135960230	C	T	135960230	3	4	707	1	0	0	0	0	1	0	0	0	13164	797	28	2	1022	2	RBMX	23	135960230	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	81122530	135960230	19310330	127	44520											
RER1	11079	mdanderson.org	37	1	2333768	2333768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	2333768	A	G	2333768	3	3	708	1	0	0	0	0	1	0	0	0	13243	72	3	3	506	3	RER1	1	2333768	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10		2333768	246916853	1	44521											
KDM1A	23028	mdanderson.org	37	1	23408744	23408744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	23408744	C	T	23408744	3	4	708	1	0	0	0	0	1	0	0	0	8129	797	28	2	2408	2	KDM1A	1	23408744	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	21074976	23408744	225841877	2	44522											
CNR2	1269	mdanderson.org	37	1	24201162	24201162	+	Missense_Mutation	SNP	G	G	A	rs2229579	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	24201162	G	A	24201162	3	1	708	1	0	0	0	0	1	0	0	0	3634	1290	45	2	140	2	CNR2	1	24201162	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	792418	24201162	225049459	3	44523											
NASP	4678	mdanderson.org	37	1	46073372	46073372	+	Missense_Mutation	SNP	G	G	C	rs202027114		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	46073372	G	C	46073372	3	2	708	1	0	0	0	0	1	0	0	0	10179	991	35	4	888	4	NASP	1	46073372	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	21872210	46073372	203177249	4	44524											
ZZZ3	26009	mdanderson.org	37	1	78097667	78097667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	78097667	T	C	78097667	3	2	708	1	0	0	0	0	1	0	0	0	18268	1551	54	3	1382	3	ZZZ3	1	78097667	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	32024295	78097667	171152954	5	44525											
USP33	23032	mdanderson.org	37	1	78177501	78177501	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	78177501	A	G	78177501	2	3	708	1	0	0	0	0	0	0	0	1	17076	273	10	3		3	USP33	1	78177501	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	79834	78177501	171073120	6	44526											
CELF3	11189	mdanderson.org	37	1	151678746	151678746	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	151678746	C	T	151678746	2	4	708	1	0	0	0	0	0	0	0	1	3219	796	28	2		2	CELF3	1	151678746	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	73501245	151678746	97571875	7	44527											
FLG2	388698	mdanderson.org	37	1	152325171	152325171	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	152325171	T	C	152325171	2	2	708	1	0	0	0	0	0	0	0	1	5930	1654	58	3		3	FLG2	1	152325171	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	646425	152325171	96925450	8	44528											
ATP8B2	57198	mdanderson.org	37	1	154315311	154315311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	154315311	G	A	154315311	3	1	708	1	0	0	0	0	1	0	0	0	1195	1290	45	2	1614	2	ATP8B2	1	154315311	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	1990140	154315311	94935310	9	44529											
SELL	6402	mdanderson.org	37	1	169673838	169673838	+	Missense_Mutation	SNP	G	G	A	rs2229569	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	169673838	G	A	169673838	3	1	708	1	0	0	0	0	1	0	0	0	14029	1232	43	2	501	2	SELL	1	169673838	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	15358527	169673838	79576783	10	44530											
KIAA1614	57710	broad.mit.edu	37	1	180910361	180910362	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	180910362	-	C	180910361	7	5	708	1	0	1	1	0	0	0	0	0	8255	962	34	0	3125	0	KIAA1614	1	180910361	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	11236523	180910361	68340260	11	44531											
KCNT2	343450	mdanderson.org	37	1	196227480	196227480	+	Silent	SNP	G	G	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	196227480	G	T	196227480	2	4	708	1	0	0	0	0	0	0	0	1	8099	1124	39	4		4	KCNT2	1	196227480	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	15317119	196227480	53023141	12	44532											
SLC45A3	85414	mdanderson.org	37	1	205628616	205628616	+	Missense_Mutation	SNP	C	C	T	rs137949511	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	205628616	C	T	205628616	3	4	708	1	0	0	0	0	1	0	0	0	14655	536	19	1	257	1	SLC45A3	1	205628616	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	9401136	205628616	43622005	13	44533											
IKBKE	9641	mdanderson.org	37	1	206650108	206650108	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	206650108	A	T	206650108	3	4	708	1	0	0	0	0	1	0	0	0	7619	275	10	5	646	5	IKBKE	1	206650108	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1021492	206650108	42600513	14	44534											
GALNT14	79623	mdanderson.org	37	2	31189098	31189098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	31189098	G	A	31189098	3	1	708	1	0	0	0	0	1	0	0	0	6219	1116	39	1	1340	1	GALNT14	2	31189098	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10		31189098	212010275	15	44535											
GCC2	9648	mdanderson.org	37	2	109088337	109088337	+	Missense_Mutation	SNP	A	A	G	rs139623765	alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	109088337	A	G	109088337	3	3	708	1	0	0	0	0	1	0	0	0	6293	188	7	3	2574	3	GCC2	2	109088337	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	77899239	109088337	134111036	16	44536											
POTEE	445582	mdanderson.org	37	2	131981279	131981279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	131981279	T	C	131981279	3	2	708	1	0	0	0	0	1	0	0	0	12271	1406	49	3	638	3	POTEE	2	131981279	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	22892942	131981279	111218094	17	44537											
CSRNP3	80034	broad.mit.edu;mdanderson.org	37	2	166532972	166532972	+	Missense_Mutation	SNP	C	C	T	rs150240455	alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	166532972	C	T	166532972	3	4	708	1	0	0	0	0	1	0	0	0	3967	768	27	1	569	1	CSRNP3	2	166532972	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	34551693	166532972	76666401	18	44538											
STAT4	6775	mdanderson.org	37	2	191937868	191937868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	191937868	T	C	191937868	3	2	708	1	0	0	0	0	1	0	0	0	15279	1550	54	3	1905	3	STAT4	2	191937868	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	25404896	191937868	51261505	19	44539											
STRADB	55437	mdanderson.org	37	2	202343187	202343187	+	Silent	SNP	G	G	A	rs200083822		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	202343187	G	A	202343187	2	1	708	1	0	0	0	0	0	0	0	1	15337	1161	41	2		2	STRADB	2	202343187	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	10405319	202343187	40856186	20	44540											
CYP20A1	57404	mdanderson.org	37	2	204154552	204154552	+	Missense_Mutation	SNP	C	C	T	rs1048013	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	204154552	C	T	204154552	3	4	708	1	0	0	0	0	1	0	0	0	4154	797	28	2	1074	2	CYP20A1	2	204154552	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	1811365	204154552	39044821	21	44541											
NDUFS1	4719	mdanderson.org	37	2	206994915	206994915	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	206994915	T	C	206994915	2	2	708	1	0	0	0	0	0	0	0	1	10298	1606	56	3		3	NDUFS1	2	206994915	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2840363	206994915	36204458	22	44542											
STK16	8576	bcgsc.ca	37	2	220111919	220111919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	220111919	G	T	220111919	3	4	708	1	0	0	0	0	1	0	0	0	15301	1232	43	4	401	4	STK16	2	220111919	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	13117004	220111919	23087454	23	44543											
UGT1A9	54600	mdanderson.org	37	2	234581157	234581157	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	234581157	A	C	234581157	3	2	708	1	0	0	0	0	1	0	0	0	16964	101	4	5	579	5	UGT1A9	2	234581157	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	14469238	234581157	8618216	24	44544											
SCN11A	11280	mdanderson.org	37	3	38912235	38912235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	38912235	C	T	38912235	3	4	708	1	0	0	0	0	1	0	0	0	13926	753	26	2	1635	2	SCN11A	3	38912235	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		38912235	159110195	25	44545											
ZNF445	353274	mdanderson.org	37	3	44492834	44492834	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	44492834	T	C	44492834	2	2	708	1	0	0	0	0	0	0	0	1	17930	1606	56	3		3	ZNF445	3	44492834	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	5580599	44492834	153529596	26	44546											
NBEAL2	23218	mdanderson.org	37	3	47042507	47042507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	47042507	A	G	47042507	3	3	708	1	0	0	0	0	1	0	0	0	10196	304	11	3	4432	3	NBEAL2	3	47042507	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2549673	47042507	150979923	27	44547											
COL7A1	1294	hgsc.bcm.edu;ucsc.edu	37	3	48602898	48602898	+	Silent	SNP	G	G	A	rs116591500	bycluster;byfrequency;by1000genomes	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	48602898	G	A	48602898	2	1	708	1	0	0	0	0	0	0	0	1	3706	1103	39	1		1	COL7A1	3	48602898	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	1560391	48602898	149419532	28	44548											
CHDH	55349	mdanderson.org	37	3	53856589	53856589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	53856589	C	T	53856589	3	4	708	1	0	0	0	0	1	0	0	0	3335	478	17	2	1024	2	CHDH	3	53856589	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	5253691	53856589	144165841	29	44549											
EPHA3	2042	mdanderson.org	37	3	89498483	89498483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	89498483	T	C	89498483	3	2	708	1	0	0	0	0	1	0	0	0	5170	1667	58	3	2535	3	EPHA3	3	89498483	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	35641894	89498483	108523947	30	44550											
OR5H6	79295	mdanderson.org	37	3	97983656	97983656	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	97983656	A	G	97983656	2	3	708	1	0	0	0	0	0	0	0	1	11170	69	3	3		3	OR5H6	3	97983656	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8485173	97983656	100038774	31	44551											
NIT2	56954	mdanderson.org	37	3	100073671	100073671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	100073671	G	A	100073671	3	1	708	1	0	0	0	0	1	0	0	0	10441	1014	35	2	773	2	NIT2	3	100073671	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	2090015	100073671	97948759	32	44552											
HCLS1	3059	hgsc.bcm.edu	37	3	121351315	121351315	+	Silent	SNP	G	G	A	rs80289672	bycluster	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	121351315	G	A	121351315	2	1	708	1	0	0	0	0	0	0	0	1	7002	1103	39	1		1	HCLS1	3	121351315	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	21277644	121351315	76671115	33	44553											
IGSF10	285313	mdanderson.org	37	3	151165120	151165120	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	151165120	T	C	151165120	2	2	708	1	0	0	0	0	0	0	0	1	7604	1606	56	3		3	IGSF10	3	151165120	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	29813805	151165120	46857310	34	44554											
NMD3	51068	mdanderson.org	37	3	160945096	160945096	+	Silent	SNP	T	T	C	rs138466882		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	160945096	T	C	160945096	2	2	708	1	0	0	0	0	0	0	0	1	10495	1838	64	3		3	NMD3	3	160945096	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	9779976	160945096	37077334	35	44555											
WDR49	151790	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	167245753	167245753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	167245753	A	T	167245753	3	4	708	1	0	0	0	0	1	0	0	0	17314	449	16	5	710	5	WDR49	3	167245753	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	6300657	167245753	30776677	36	44556											
ALG3	10195	broad.mit.edu;mdanderson.org	37	3	183960376	183960376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	183960376	C	T	183960376	3	4	708	1	0	0	0	0	1	0	0	0	520	536	19	1	77	1	ALG3	3	183960376	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	16714623	183960376	14062054	37	44557											
MUC4	4585	mdanderson.org	37	3	195506655	195506655	+	Silent	SNP	T	T	A	rs200897653		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	195506655	T	A	195506655	2	1	708	1	0	0	0	0	0	0	0	1	9985	1654	58	5		5	MUC4	3	195506655	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	11546279	195506655	2515775	38	44558			1	129		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	broad.mit.edu;mdanderson.org	37	3	195506822	195506822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	195506822	C	T	195506822	3	4	708	1	0	0	0	0	1	0	0	0	9985	652	23	1		1	MUC4	3	195506822	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	167	195506822	2515608	39	44559	617	2	1	129		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	3	195506826	195506826	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	195506826	A	G	195506826	2	3	708	1	0	0	0	0	0	0	0	1	9985	349	13	3		3	MUC4	3	195506826	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4	195506826	2515604	40	44560	617	2	1	129		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	3	195506946	195506946	+	Silent	SNP	T	T	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	195506946	T	G	195506946	2	3	708	1	0	0	0	0	0	0	0	1	9985	1567	55	5		5	MUC4	3	195506946	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	120	195506946	2515484	41	44561	618	2	1	129		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	3	195506955	195506955	+	Silent	SNP	T	T	C	rs201420433		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	195506955	T	C	195506955	2	2	708	1	0	0	0	0	0	0	0	1	9985	1567	55	3		3	MUC4	3	195506955	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	9	195506955	2515475	42	44562	618	2	1	129		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	3	195509127	195509127	+	Silent	SNP	A	A	G	rs200879287		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	195509127	A	G	195509127	2	3	708	1	0	0	0	0	0	0	0	1	9985	407	15	3		3	MUC4	3	195509127	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2172	195509127	2513303	43	44563			1	129		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	3	195510710	195510710	+	Missense_Mutation	SNP	T	T	C	rs75657645	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	195510710	T	C	195510710	3	2	708	1	0	0	0	0	1	0	0	0	9985	1580	55	3		3	MUC4	3	195510710	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1583	195510710	2511720	44	44564			1	129		7	5	4056	N	T_C_A	4.095918e-08
AFAP1	60312	mdanderson.org	37	4	7770723	7770723	+	Silent	SNP	G	G	T	rs2285761	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	7770723	G	T	7770723	2	4	708	1	0	0	0	0	0	0	0	1	353	1115	39	4		4	AFAP1	4	7770723	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10		7770723	183383553	45	44565											
PPARGC1A	10891	mdanderson.org	37	4	23814445	23814445	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	23814445	T	C	23814445	2	2	708	1	0	0	0	0	0	0	0	1	12307	1606	56	3		3	PPARGC1A	4	23814445	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	16043722	23814445	167339831	46	44566											
SEC31A	22872	mdanderson.org	37	4	83774804	83774804	+	Silent	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	83774804	G	A	83774804	2	1	708	1	0	0	0	0	0	0	0	1	14011	963	34	2		2	SEC31A	4	83774804	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	59960359	83774804	107379472	47	44567											
DMP1	1758	mdanderson.org	37	4	88584283	88584283	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	88584283	A	G	88584283	2	3	708	1	0	0	0	0	0	0	0	1	4585	69	3	3		3	DMP1	4	88584283	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4809479	88584283	102569993	48	44568											
HERC6	55008	mdanderson.org	37	4	89363472	89363472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	89363472	A	G	89363472	3	3	708	1	0	0	0	0	1	0	0	0	7069	64	3	3	2816	3	HERC6	4	89363472	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	779189	89363472	101790804	49	44569											
FBXW7	55294	mdanderson.org	37	4	153332484	153332484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	153332484	A	G	153332484	3	3	708	1	0	0	0	0	1	0	0	0	5776	304	11	3	2111	3	FBXW7	4	153332484	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	63969012	153332484	37821792	50	44570											
FHDC1	85462	broad.mit.edu	37	4	153896828	153896829	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	153896829	-	G	153896828	7	5	708	1	0	1	1	0	0	0	0	0	5883	755	27	0	2427	0	FHDC1	4	153896828	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	564344	153896828	37257448	51	44571											
GRIA2	2891	mdanderson.org	37	4	158257800	158257800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	158257800	A	G	158257800	3	3	708	1	0	0	0	0	1	0	0	0	6775	246	9	3	1787	3	GRIA2	4	158257800	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4360972	158257800	32896476	52	44572											
CPE	1363	mdanderson.org	37	4	166385729	166385729	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	166385729	A	G	166385729	2	3	708	1	0	0	0	0	0	0	0	1	3801	175	7	3		3	CPE	4	166385729	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8127929	166385729	24768547	53	44573											
DDX60L	91351	mdanderson.org	37	4	169374381	169374381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	169374381	C	T	169374381	3	4	708	1	0	0	0	0	1	0	0	0	4381	536	19	1	4354	1	DDX60L	4	169374381	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2988652	169374381	21779895	54	44574											
C4orf27	54969	mdanderson.org	37	4	170678993	170678993	+	Silent	SNP	T	T	C	rs11540095	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	170678993	T	C	170678993	2	2	708	1	0	0	0	0	0	0	0	1	2260	1538	54	3		3	C4orf27	4	170678993	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1304612	170678993	20475283	55	44575											
FRG1	2483	mdanderson.org	37	4	190883028	190883028	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	190883028	C	T	190883028	2	4	708	1	0	0	0	0	0	0	0	1	6053	477	17	2		2	FRG1	4	190883028	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	20204035	190883028	271248	56	44576											
FRG1	2483	mdanderson.org	37	4	190883051	190883051	+	Missense_Mutation	SNP	G	G	A	rs75206851		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	190883051	G	A	190883051	3	1	708	1	0	0	0	0	1	0	0	0	6053	1116	39	1	734	1	FRG1	4	190883051	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	23	190883051	271225	57	44577											
PRDM9	56979	mdanderson.org	37	5	23527721	23527721	+	Missense_Mutation	SNP	C	C	A	rs201643800		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	23527721	C	A	23527721	3	1	708	1	0	0	0	0	1	0	0	0	12473	884	31	4	2562	4	PRDM9	5	23527721	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		23527721	157387539	58	44578											
RAI14	26064	mdanderson.org	37	5	34824215	34824215	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	34824215	A	G	34824215	2	3	708	1	0	0	0	0	0	0	0	1	13021	40	2	3		3	RAI14	5	34824215	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	11296494	34824215	146091045	59	44579											
HCN1	348980	hgsc.bcm.edu;bcgsc.ca	37	5	45262026	45262026	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	45262026	T	A	45262026	3	1	708	1	0	0	0	0	1	0	0	0	7003	1403	49	5	6	5	HCN1	5	45262026	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	10437811	45262026	135653234	60	44580											
BDP1	55814	mdanderson.org	37	5	70800538	70800538	+	Missense_Mutation	SNP	G	G	A	rs3761967	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	70800538	G	A	70800538	3	1	708	1	0	0	0	0	1	0	0	0	1395	1377	48	2	2394	2	BDP1	5	70800538	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	25538512	70800538	110114722	61	44581											
ZNF366	167465	ucsc.edu;mdanderson.org;bcgsc.ca	37	5	71756876	71756876	+	Missense_Mutation	SNP	C	C	T	rs74552129	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	71756876	C	T	71756876	3	4	708	1	0	0	0	0	1	0	0	0	17882	536	19	1	1802	1	ZNF366	5	71756876	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	956338	71756876	109158384	62	44582											
PCDHB10	56126	mdanderson.org	37	5	140572820	140572820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	140572820	T	C	140572820	3	2	708	1	0	0	0	0	1	0	0	0	11542	1667	58	3	697	3	PCDHB10	5	140572820	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	68815944	140572820	40342440	63	44583											
ATXN1	6310	mdanderson.org	37	6	16327918	16327918	+	Missense_Mutation	SNP	C	C	A	rs28555263		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	16327918	C	A	16327918	3	1	708	1	0	0	0	0	1	0	0	0	1209	796	28	4	1831	4	ATXN1	6	16327918	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		16327918	154787149	64	44584											
KIAA0319	9856	mdanderson.org	37	6	24588884	24588884	+	Missense_Mutation	SNP	C	C	T	rs4504469	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	24588884	C	T	24588884	3	4	708	1	0	0	0	0	1	0	0	0	8175	768	27	1	2359	1	KIAA0319	6	24588884	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	8260966	24588884	146526183	65	44585											
SLC17A4	10050	mdanderson.org	37	6	25776845	25776845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	25776845	C	T	25776845	3	4	708	1	0	0	0	0	1	0	0	0	14432	652	23	1	1040	1	SLC17A4	6	25776845	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	1187961	25776845	145338222	66	44586											
HLA-C	3107	mdanderson.org	37	6	31238942	31238942	+	Missense_Mutation	SNP	G	G	A	rs2308590		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	31238942	G	A	31238942	3	1	708	1	0	0	0	0	1	0	0	0	7204	1087	38	1	597	1	HLA-C	6	31238942	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	5462097	31238942	139876125	67	44587			2	130		3	3	602	N	G_CG_C	1.098398e-05
HLA-C	3107	mdanderson.org	37	6	31239518	31239518	+	Silent	SNP	C	C	T	rs1050420	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	31239518	C	T	31239518	2	4	708	1	0	0	0	0	0	0	0	1	7204	871	31	1		1	HLA-C	6	31239518	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	576	31239518	139875549	68	44588			2	130		3	3	602	N	G_CG_C	1.098398e-05
HLA-C	3107	mdanderson.org	37	6	31239543	31239544	+	Silent	DNP	CG	CG	TT	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	TT	31239544	CG	TT	31239543	2	4	708	1	0	0	0	0	0	0	0	1	7204	652	23	1		1	HLA-C	6	31239543	Silent	DNP	CG	TCGA-KN-8433-01A-11D-2310-10	25	31239543	139875524	69	44589			2	130		3	3	602	N	G_CG_C	1.098398e-05
RUNX2	860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	45405707	45405707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	45405707	A	G	45405707	3	3	708	1	0	0	0	0	1	0	0	0	13761	43	2	3	634	3	RUNX2	6	45405707	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	14166164	45405707	125709360	70	44590											
ENPP5	59084	mdanderson.org	37	6	46133228	46133228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	46133228	A	G	46133228	3	3	708	1	0	0	0	0	1	0	0	0	5135	43	2	3	539	3	ENPP5	6	46133228	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	727521	46133228	124981839	71	44591											
RIMS1	22999	ucsc.edu;mdanderson.org	37	6	72974700	72974700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	72974700	A	G	72974700	3	3	708	1	0	0	0	0	1	0	0	0	13380	43	2	3	3380	3	RIMS1	6	72974700	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	26841472	72974700	98140367	72	44592											
HSF2	3298	mdanderson.org	37	6	122743949	122743949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	122743949	A	G	122743949	3	3	708	1	0	0	0	0	1	0	0	0	7403	246	9	3	951	3	HSF2	6	122743949	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	49769249	122743949	48371118	73	44593											
LPA	4018	mdanderson.org	37	6	160952770	160952770	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	160952770	T	C	160952770	2	2	708	1	0	0	0	0	0	0	0	1	8910	1780	62	3		3	LPA	6	160952770	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	38208821	160952770	10162297	74	44594											
UNC93A	54346	mdanderson.org	37	6	167728774	167728774	+	Missense_Mutation	SNP	T	T	C	rs79485532		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	167728774	T	C	167728774	3	2	708	1	0	0	0	0	1	0	0	0	17008	1464	51	3	1238	3	UNC93A	6	167728774	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	6776004	167728774	3386293	75	44595											
MICALL2	79778	mdanderson.org	37	7	1498910	1498910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	1498910	T	C	1498910	3	2	708	1	0	0	0	0	1	0	0	0	9581	1638	57	3	2729	3	MICALL2	7	1498910	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		1498910	157639753	76	44596											
STK31	56164	mdanderson.org	37	7	23792342	23792342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	23792342	A	G	23792342	3	3	708	1	0	0	0	0	1	0	0	0	15308	247	9	3	1058	3	STK31	7	23792342	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	22293432	23792342	135346321	77	44597											
ABCA13	154664	mdanderson.org	37	7	48314279	48314279	+	Silent	SNP	G	G	A	rs6955212	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	48314279	G	A	48314279	2	1	708	1	0	0	0	0	0	0	0	1	31	991	35	2		2	ABCA13	7	48314279	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	24521937	48314279	110824384	78	44598											
BAZ1B	9031	mdanderson.org	37	7	72891458	72891458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	72891458	T	C	72891458	3	2	708	1	0	0	0	0	1	0	0	0	1330	1609	56	3	2170	3	BAZ1B	7	72891458	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	24577179	72891458	86247205	79	44599											
BAZ1B	9031	mdanderson.org	37	7	72892254	72892254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	72892254	G	A	72892254	3	1	708	1	0	0	0	0	1	0	0	0	1330	1058	37	1	2966	1	BAZ1B	7	72892254	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	796	72892254	86246409	80	44600											
CLDN3	1365	broad.mit.edu;mdanderson.org	37	7	73184305	73184305	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	73184305	C	T	73184305	2	4	708	1	0	0	0	0	0	0	0	1	3488	523	19	1		1	CLDN3	7	73184305	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	292051	73184305	85954358	81	44601											
C7orf63	79846	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	89937126	89937126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	89937126	G	T	89937126	3	4	708	1	0	0	0	0	1	0	0	0	2411	1241	43	4	2590	4	C7orf63	7	89937126	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	16752821	89937126	69201537	82	44602											
CCDC132	55610	mdanderson.org	37	7	92905518	92905518	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	92905518	T	C	92905518	2	2	708	1	0	0	0	0	0	0	0	1	2769	1771	62	3		3	CCDC132	7	92905518	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2968392	92905518	66233145	83	44603											
SLC25A13	10165	mdanderson.org	37	7	95813628	95813628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	95813628	T	C	95813628	3	2	708	1	0	0	0	0	1	0	0	0	14488	1792	62	3	921	3	SLC25A13	7	95813628	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2908110	95813628	63325035	84	44604											
STAG3	10734	mdanderson.org	37	7	99783860	99783860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	99783860	A	G	99783860	3	3	708	1	0	0	0	0	1	0	0	0	15256	275	10	3	388	3	STAG3	7	99783860	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3970232	99783860	59354803	85	44605											
UBN2	254048	mdanderson.org	37	7	138960858	138960858	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	138960858	A	G	138960858	2	3	708	1	0	0	0	0	0	0	0	1	16905	11	1	3		3	UBN2	7	138960858	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	39176998	138960858	20177805	86	44606											
TAS2R4	50832	mdanderson.org	37	7	141478814	141478814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	141478814	T	C	141478814	3	2	708	1	0	0	0	0	1	0	0	0	15589	1667	58	3	528	3	TAS2R4	7	141478814	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2517956	141478814	17659849	87	44607											
PRSS1	5644	mdanderson.org	37	7	142458526	142458526	+	Missense_Mutation	SNP	A	A	G	rs144422014		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	142458526	A	G	142458526	3	3	708	1	0	0	0	0	1	0	0	0	12624	43	2	3	167	3	PRSS1	7	142458526	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	979712	142458526	16680137	88	44608											
OR2A2	442361	mdanderson.org	37	7	143806681	143806681	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	143806681	A	G	143806681	2	3	708	1	0	0	0	0	0	0	0	1	10984	69	3	3		3	OR2A2	7	143806681	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1348155	143806681	15331982	89	44609											
CNOT7	29883	mdanderson.org	37	8	17088229	17088229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	17088229	T	C	17088229	3	2	708	1	0	0	0	0	1	0	0	0	3626	1680	58	3	3	3	CNOT7	8	17088229	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		17088229	129275793	90	44610											
ST18	9705	mdanderson.org	37	8	53025806	53025806	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	53025806	T	C	53025806	2	2	708	1	0	0	0	0	0	0	0	1	15224	1606	56	3		3	ST18	8	53025806	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	35937577	53025806	93338216	91	44611											
WWP1	11059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	87410805	87410805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	87410805	A	C	87410805	3	2	708	1	0	0	0	0	1	0	0	0	17427	11	1	5	495	5	WWP1	8	87410805	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	34384999	87410805	58953217	92	44612											
CYP11B1	1584	mdanderson.org	37	8	143958291	143958291	+	Silent	SNP	C	C	T	rs6419	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	143958291	C	T	143958291	2	4	708	1	0	0	0	0	0	0	0	1	4147	593	21	2		2	CYP11B1	8	143958291	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	56547486	143958291	2405731	93	44613											
SCRIB	23513	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	144890886	144890886	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	144890886	G	A	144890886	4	1	708	1	0	0	0	0	0	1	0	0	13950	1299	45	2	3051	2	SCRIB	8	144890886	Nonsense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	932595	144890886	1473136	94	44614											
FOXD4	2298	broad.mit.edu	37	9	117662	117663	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	117663	-	G	117662	7	5	708	1	0	1	1	0	0	0	0	0	6006	768	27	0	865	0	FOXD4	9	117662	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10		117662	141095769	95	44615											
AQP7	364	mdanderson.org	37	9	33385690	33385690	+	Missense_Mutation	SNP	G	G	T	rs139024279	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	33385690	G	T	33385690	3	4	708	1	0	0	0	0	1	0	0	0	831	1116	39	4	336	4	AQP7	9	33385690	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	33268028	33385690	107827741	96	44616			3	131		5	3	504	N	G_C	7.695331e-06
AQP7	364	mdanderson.org	37	9	33386144	33386144	+	Silent	SNP	G	G	A	rs76209395	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	33386144	G	A	33386144	2	1	708	1	0	0	0	0	0	0	0	1	831	1045	37	1		1	AQP7	9	33386144	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	454	33386144	107827287	97	44617	619	3	3	131		5	3	504	N	G_C	7.695331e-06
AQP7	364	mdanderson.org	37	9	33386146	33386146	+	Missense_Mutation	SNP	C	C	A	rs76608797	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	33386146	C	A	33386146	3	1	708	1	0	0	0	0	1	0	0	0	831	536	19	4	586	4	AQP7	9	33386146	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2	33386146	107827285	98	44618	619	3	3	131		5	3	504	N	G_C	7.695331e-06
AQP7	364	mdanderson.org	37	9	33386152	33386152	+	Missense_Mutation	SNP	C	C	A	rs144445015	alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	33386152	C	A	33386152	3	1	708	1	0	0	0	0	1	0	0	0	831	652	23	4	592	4	AQP7	9	33386152	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	6	33386152	107827279	99	44619	619	3	3	131		5	3	504	N	G_C	7.695331e-06
AQP7	364	mdanderson.org	37	9	33386193	33386193	+	Missense_Mutation	SNP	G	G	A	rs199840488		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	33386193	G	A	33386193	3	1	708	1	0	0	0	0	1	0	0	0	831	1101	38	1	633	1	AQP7	9	33386193	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	41	33386193	107827238	100	44620			3	131		5	3	504	N	G_C	7.695331e-06
PRSS3	5646	mdanderson.org	37	9	33796672	33796673	+	Missense_Mutation	DNP	TG	TG	CA	rs76740888		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	CA	33796673	TG	CA	33796672	3	2	708	1	0	0	0	0	1	0	0	0	12632	1800	63	3	293	3	PRSS3	9	33796672	Missense_Mutation	DNP	TG	TCGA-KN-8433-01A-11D-2310-10	410479	33796672	107416759	101	44621											
ALDH1B1	219	mdanderson.org;bcgsc.ca	37	9	38396065	38396065	+	Missense_Mutation	SNP	G	G	T	rs2073478	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	38396065	G	T	38396065	3	4	708	1	0	0	0	0	1	0	0	0	493	1087	38	4	322	4	ALDH1B1	9	38396065	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	4599393	38396065	102817366	102	44622											
CNTNAP3	79937	mdanderson.org	37	9	39140621	39140621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	39140621	A	G	39140621	3	3	708	1	0	0	0	0	1	0	0	0	3650	275	10	3	2147	3	CNTNAP3	9	39140621	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	744556	39140621	102072810	103	44623											
C5	727	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	123783821	123783821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	123783821	T	C	123783821	3	2	708	1	0	0	0	0	1	0	0	0	2282	1493	52	3	3886	3	C5	9	123783821	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	84643200	123783821	17429610	104	44624											
SFTPA1	653509	mdanderson.org	37	10	81371398	81371398	+	Splice_Site	SNP	G	G	A	rs3997773	byfrequency;by1000genomes	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	81371398	G	A	81371398	5	1	708	1	0	0	0	0	0	0	1	0	14202	1275	44	2	25	2	SFTPA1	10	81371398	Splice_Site	SNP	G	TCGA-KN-8433-01A-11D-2310-10		81371398	54163349	105	44625											
FAM35A	54537	mdanderson.org	37	10	88911273	88911273	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	88911273	A	G	88911273	2	3	708	1	0	0	0	0	0	0	0	1	5560	40	2	3		3	FAM35A	10	88911273	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	7539875	88911273	46623474	106	44626											
CHUK	1147	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	101969426	101969426	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	101969426	G	A	101969426	4	1	708	1	0	0	0	0	0	1	0	0	3418	1299	45	2	1231	2	CHUK	10	101969426	Nonsense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	13058153	101969426	33565321	107	44627											
SLK	9748	hgsc.bcm.edu	37	10	105762029	105762030	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	105762030	-	A	105762029	7	5	708	1	0	1	1	0	0	0	0	0	14761	943	33	0	1127	0	SLK	10	105762029	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	3792603	105762029	29772718	108	44628	620	2									
SLK	9748	bcgsc.ca	37	10	105762030	105762031	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	105762031	-	A	105762030	7	5	708	1	0	1	1	0	0	0	0	0	14761	246	9	0	1128	0	SLK	10	105762030	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	1	105762030	29772717	109	44629	620	2									
MUC6	4588	mdanderson.org	37	11	1016243	1016243	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	1016243	A	G	1016243	2	3	708	1	0	0	0	0	0	0	0	1	9987	330	12	3		3	MUC6	11	1016243	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10		1016243	133990273	110	44630			4	132		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	11	1016604	1016605	+	Missense_Mutation	DNP	AC	AC	GG	rs147913342		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	GG	1016605	AC	GG	1016604	3	3	708	1	0	0	0	0	1	0	0	0	9987	159	6	3	1134	3	MUC6	11	1016604	Missense_Mutation	DNP	AC	TCGA-KN-8433-01A-11D-2310-10	361	1016604	133989912	111	44631			4	132		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	11	1016770	1016770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	1016770	G	A	1016770	3	1	708	1	0	0	0	0	1	0	0	0	9987	1261	44	2	1300	2	MUC6	11	1016770	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	166	1016770	133989746	112	44632			4	132		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	11	1017088	1017088	+	Missense_Mutation	SNP	A	A	C	rs74990443		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	1017088	A	C	1017088	3	2	708	1	0	0	0	0	1	0	0	0	9987	333	12	5	1618	5	MUC6	11	1017088	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	318	1017088	133989428	113	44633			4	132		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	11	1017226	1017226	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	1017226	T	G	1017226	3	3	708	1	0	0	0	0	1	0	0	0	9987	1638	57	5	1756	5	MUC6	11	1017226	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	138	1017226	133989290	114	44634			4	132		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	11	1018340	1018340	+	Silent	SNP	T	T	C	rs77556339		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	1018340	T	C	1018340	2	2	708	1	0	0	0	0	0	0	0	1	9987	1799	63	3		3	MUC6	11	1018340	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1114	1018340	133988176	115	44635			4	132		6	6	2098	N	T_G_AC_A	9.685436e-12
OR51B6	390058	mdanderson.org	37	11	5373489	5373489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	5373489	T	C	5373489	3	2	708	1	0	0	0	0	1	0	0	0	11099	1667	58	3	754	3	OR51B6	11	5373489	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	4355149	5373489	129633027	116	44636											
TRIM34	53840	mdanderson.org	37	11	5662452	5662452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	5662452	A	G	5662452	3	3	708	1	0	0	0	0	1	0	0	0	16520	304	11	3		3	TRIM34	11	5662452	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	288963	5662452	129344064	117	44637											
RRP8	23378	mdanderson.org	37	11	6623149	6623149	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	6623149	T	C	6623149	2	2	708	1	0	0	0	0	0	0	0	1	13703	1780	62	3		3	RRP8	11	6623149	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	960697	6623149	128383367	118	44638											
OR2AG2	338755	mdanderson.org	37	11	6789972	6789972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	6789972	A	G	6789972	3	3	708	1	0	0	0	0	1	0	0	0	10992	43	2	3	737	3	OR2AG2	11	6789972	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	166823	6789972	128216544	119	44639											
OR10A2	341276	mdanderson.org	37	11	6891395	6891395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	6891395	T	C	6891395	3	2	708	1	0	0	0	0	1	0	0	0	10897	1783	62	3	412	3	OR10A2	11	6891395	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	101423	6891395	128115121	120	44640											
SBF2	81846	mdanderson.org	37	11	9809226	9809226	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	9809226	C	T	9809226	4	4	708	1	0	0	0	0	0	1	0	0	13872	624	22	2	577	2	SBF2	11	9809226	Nonsense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2917831	9809226	125197290	121	44641											
EIF4G2	1982	mdanderson.org	37	11	10823662	10823662	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	10823662	C	T	10823662	2	4	708	1	0	0	0	0	0	0	0	1	5039	610	22	2		2	EIF4G2	11	10823662	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	1014436	10823662	124182854	122	44642											
MYBPC3	4607	mdanderson.org	37	11	47364266	47364266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	47364266	T	C	47364266	3	2	708	1	0	0	0	0	1	0	0	0	10020	1551	54	3	2409	3	MYBPC3	11	47364266	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	36540604	47364266	87642250	123	44643											
OR5L1	219437	mdanderson.org	37	11	55579068	55579068	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	55579068	C	T	55579068	2	4	708	1	0	0	0	0	0	0	0	1	11177	506	18	2		2	OR5L1	11	55579068	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	8214802	55579068	79427448	124	44644											
OR8J3	81168	mdanderson.org	37	11	55905070	55905070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	55905070	T	C	55905070	3	2	708	1	0	0	0	0	1	0	0	0	11249	1725	60	3	824	3	OR8J3	11	55905070	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	326002	55905070	79101446	125	44645											
AHNAK	79026	mdanderson.org	37	11	62293548	62293548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	62293548	C	T	62293548	3	4	708	1	0	0	0	0	1	0	0	0	414	690	24	2	9451	2	AHNAK	11	62293548	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	6388478	62293548	72712968	126	44646											
ZNHIT2	741	mdanderson.org	37	11	64884065	64884065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	64884065	A	G	64884065	3	3	708	1	0	0	0	0	1	0	0	0	18219	304	11	3	154	3	ZNHIT2	11	64884065	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2590517	64884065	70122451	127	44647											
DYNC2H1	79659	mdanderson.org	37	11	103090674	103090674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	103090674	A	G	103090674	3	3	708	1	0	0	0	0	1	0	0	0	4848	64	3	3	9085	3	DYNC2H1	11	103090674	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	38206609	103090674	31915842	128	44648											
TAPBPL	55080	broad.mit.edu;mdanderson.org	37	12	6567817	6567817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	6567817	C	T	6567817	3	4	708	1	0	0	0	0	1	0	0	0	15565	681	24	2	929	2	TAPBPL	12	6567817	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		6567817	127284078	129	44649											
ATN1	1822	mdanderson.org	37	12	7045912	7045912	+	Silent	SNP	G	G	A	rs144280633	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	7045912	G	A	7045912	2	1	708	1	0	0	0	0	0	0	0	1	1111	962	34	2		2	ATN1	12	7045912	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	478095	7045912	126805983	130	44650											
PRB2	653247	mdanderson.org	37	12	11546764	11546764	+	Missense_Mutation	SNP	G	G	T	rs201994479		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	11546764	G	T	11546764	3	4	708	1	0	0	0	0	1	0	0	0	12453	1348	47	4	1006	4	PRB2	12	11546764	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	4500852	11546764	122305131	131	44651											
WBP11	51729	mdanderson.org	37	12	14940061	14940061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	14940061	A	G	14940061	3	3	708	1	0	0	0	0	1	0	0	0	17270	304	11	3	65	3	WBP11	12	14940061	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3393297	14940061	118911834	132	44652											
TMEM117	84216	mdanderson.org	37	12	44338122	44338122	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	44338122	T	C	44338122	2	2	708	1	0	0	0	0	0	0	0	1	16043	1771	62	3		3	TMEM117	12	44338122	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	29398061	44338122	89513773	133	44653											
ENDOU	8909	mdanderson.org	37	12	48104619	48104619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	48104619	T	C	48104619	3	2	708	1	0	0	0	0	1	0	0	0	5118	1638	57	3	37	3	ENDOU	12	48104619	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	3766497	48104619	85747276	134	44654											
ARF3	377	broad.mit.edu	37	12	49332755	49332756	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	49332756	-	C	49332755	7	5	708	1	0	1	1	0	0	0	0	0	845	1203	42	0	28	0	ARF3	12	49332755	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	1228136	49332755	84519140	135	44655											
FIGNL2	401720	mdanderson.org	37	12	52215102	52215102	+	Missense_Mutation	SNP	T	T	G	rs303819		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	52215102	T	G	52215102	3	3	708	1	0	0	0	0	1	0	0	0	5900	1667	58	5	869	5	FIGNL2	12	52215102	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2882347	52215102	81636793	136	44656											
KRT80	144501	mdanderson.org	37	12	52574312	52574312	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	52574312	T	C	52574312	2	2	708	1	0	0	0	0	0	0	0	1	8501	1838	64	3		3	KRT80	12	52574312	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	359210	52574312	81277583	137	44657											
KRT81	3887	mdanderson.org	37	12	52681460	52681460	+	Missense_Mutation	SNP	G	G	A	rs4761786	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	52681460	G	A	52681460	3	1	708	1	0	0	0	0	1	0	0	0	8502	1087	38	1	587	1	KRT81	12	52681460	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	107148	52681460	81170435	138	44658											
GRIP1	23426	mdanderson.org	37	12	66786508	66786508	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	66786508	A	G	66786508	2	3	708	1	0	0	0	0	0	0	0	1	6794	40	2	3		3	GRIP1	12	66786508	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	14105048	66786508	67065387	139	44659											
THAP2	83591	ucsc.edu	37	12	72067994	72067994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	72067994	A	T	72067994	3	4	708	1	0	0	0	0	1	0	0	0	15856	333	12	5	89	5	THAP2	12	72067994	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	5281486	72067994	61783901	140	44660											
ACSS3	79611	mdanderson.org	37	12	81503481	81503481	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	81503481	C	T	81503481	4	4	708	1	0	0	0	0	0	1	0	0	190	711	25	2	460	2	ACSS3	12	81503481	Nonsense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	9435487	81503481	52348414	141	44661											
PLXNC1	10154	mdanderson.org	37	12	94676121	94676121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	94676121	T	C	94676121	3	2	708	1	0	0	0	0	1	0	0	0	12133	1783	62	3	3913	3	PLXNC1	12	94676121	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	13172640	94676121	39175774	142	44662											
TMEM132B	114795	broad.mit.edu;mdanderson.org	37	12	126138173	126138173	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	126138173	C	T	126138173	2	4	708	1	0	0	0	0	0	0	0	1	16058	547	19	1		1	TMEM132B	12	126138173	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	31462052	126138173	7713722	143	44663											
TPTE2	93492	mdanderson.org	37	13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	rs201542496		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	20056686	T	C	20056686	3	2	708	1	0	0	0	0	1	0	0	0	16443	1420	49	3	1515	3	TPTE2	13	20056686	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		20056686	95113192	144	44664											
FGF9	2254	mdanderson.org	37	13	22275358	22275358	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	22275358	A	G	22275358	2	3	708	1	0	0	0	0	0	0	0	1	5866	301	11	3		3	FGF9	13	22275358	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2218672	22275358	92894520	145	44665											
PABPC3	5042	mdanderson.org	37	13	25671967	25671967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	25671967	G	T	25671967	3	4	708	1	0	0	0	0	1	0	0	0	11372	1000	35	4	1633	4	PABPC3	13	25671967	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	3396609	25671967	89497911	146	44666											
MAB21L1	4081	mdanderson.org	37	13	36050525	36050525	+	RNA	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	36050525	T	C	36050525	1	2	708	0	1	0	0	0	0	0	0	0	9148	1798	62	3		3	MAB21L1	13	36050525	RNA	SNP	T	TCGA-KN-8433-01A-11D-2310-10	10378558	36050525	79119353	147	44667											
OR4N2	390429	mdanderson.org	37	14	20296208	20296208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	20296208	T	C	20296208	3	2	708	1	0	0	0	0	1	0	0	0	11084	1609	56	3	603	3	OR4N2	14	20296208	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		20296208	87053332	148	44668											
SLC7A7	9056	mdanderson.org	37	14	23243680	23243680	+	Silent	SNP	T	T	C	rs139619724	byfrequency;alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	23243680	T	C	23243680	2	2	708	1	0	0	0	0	0	0	0	1	14716	1606	56	3		3	SLC7A7	14	23243680	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2947472	23243680	84105860	149	44669											
ACIN1	22985	ucsc.edu	37	14	23548787	23548787	+	Missense_Mutation	SNP	C	C	T	rs61741619	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	23548787	C	T	23548787	3	4	708	1	0	0	0	0	1	0	0	0	142	536	19	1	2297	1	ACIN1	14	23548787	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	305107	23548787	83800753	150	44670											
LRFN5	145581	mdanderson.org	37	14	42356084	42356084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	42356084	A	G	42356084	3	3	708	1	0	0	0	0	1	0	0	0	8948	391	14	3	258	3	LRFN5	14	42356084	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	18807297	42356084	64993456	151	44671											
SOS2	6655	mdanderson.org	37	14	50597336	50597336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	50597336	T	C	50597336	3	2	708	1	0	0	0	0	1	0	0	0	14950	1725	60	3	794	3	SOS2	14	50597336	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	8241252	50597336	56752204	152	44672											
PSMC6	5706	mdanderson.org	37	14	53178163	53178163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	53178163	A	G	53178163	3	3	708	1	0	0	0	0	1	0	0	0	12701	43	2	3	426	3	PSMC6	14	53178163	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2580827	53178163	54171377	153	44673											
DAAM1	23002	mdanderson.org	37	14	59830429	59830429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	59830429	A	G	59830429	3	3	708	1	0	0	0	0	1	0	0	0	4217	188	7	3	2875	3	DAAM1	14	59830429	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	6652266	59830429	47519111	154	44674											
STON2	85439	mdanderson.org	37	14	81744579	81744579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	81744579	A	G	81744579	3	3	708	1	0	0	0	0	1	0	0	0	15330	304	11	3	1647	3	STON2	14	81744579	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	21914150	81744579	25604961	155	44675											
TRIP11	9321	mdanderson.org	37	14	92470021	92470021	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	92470021	T	C	92470021	2	2	708	1	0	0	0	0	0	0	0	1	16567	1606	56	3		3	TRIP11	14	92470021	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	10725442	92470021	14879519	156	44676											
DICER1	23405	mdanderson.org	37	14	95557673	95557673	+	Silent	SNP	T	T	C	rs201134588		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	95557673	T	C	95557673	2	2	708	1	0	0	0	0	0	0	0	1	4523	1606	56	3		3	DICER1	14	95557673	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	3087652	95557673	11791867	157	44677											
PPP2R5C	5527	mdanderson.org	37	14	102252425	102252425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	102252425	T	C	102252425	3	2	708	1	0	0	0	0	1	0	0	0	12404	1667	58	3	174	3	PPP2R5C	14	102252425	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	6694752	102252425	5097115	158	44678											
TECPR2	9895	mdanderson.org;bcgsc.ca	37	14	102910140	102910140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	102910140	A	G	102910140	3	3	708	1	0	0	0	0	1	0	0	0	15756	304	11	3	2951	3	TECPR2	14	102910140	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	657715	102910140	4439400	159	44679											
AHNAK2	113146	mdanderson.org	37	14	105418149	105418149	+	Silent	SNP	A	A	T	rs147978925	by1000genomes	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	105418149	A	T	105418149	2	4	708	1	0	0	0	0	0	0	0	1	415	242	9	5		5	AHNAK2	14	105418149	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2508009	105418149	1931391	160	44680											
ARHGAP11A	9824	broad.mit.edu	37	15	32908429	32908430	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	32908430	-	G	32908429	7	5	708	1	0	1	1	0	0	0	0	0	863	1580	55	0	19	0	ARHGAP11A	15	32908429	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10		32908429	69622963	161	44681											
CASC5	57082	mdanderson.org	37	15	40913801	40913801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	40913801	A	G	40913801	3	3	708	1	0	0	0	0	1	0	0	0	2665	296	11	3	1455	3	CASC5	15	40913801	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8005372	40913801	61617591	162	44682											
CKMT1B	1159	broad.mit.edu	37	15	43890418	43890419	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	43890419	-	G	43890418	7	5	708	1	0	1	1	0	0	0	0	0	3452	1580	55	0	930	0	CKMT1B	15	43890418	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	2976617	43890418	58640974	163	44683											
CATSPER2	117155	mdanderson.org	37	15	43928380	43928380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	43928380	A	G	43928380	3	3	708	1	0	0	0	0	1	0	0	0	2690	72	3	3	736	3	CATSPER2	15	43928380	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	37962	43928380	58603012	164	44684											
SLC12A1	6557	bcgsc.ca	37	15	48512846	48512846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	48512846	C	A	48512846	3	1	708	1	0	0	0	0	1	0	0	0	14395	623	22	4	442	4	SLC12A1	15	48512846	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	4584466	48512846	54018546	165	44685											
LACTB	114294	mdanderson.org	37	15	63419154	63419154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	63419154	T	C	63419154	3	2	708	1	0	0	0	0	1	0	0	0	8604	1609	56	3	531	3	LACTB	15	63419154	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	14906308	63419154	39112238	166	44686											
HERC1	8925	broad.mit.edu	37	15	64017642	64017643	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	64017643	-	A	64017642	7	5	708	1	0	1	1	0	0	0	0	0	7064	581	21	0	11412	0	HERC1	15	64017642	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	598488	64017642	38513750	167	44687											
BBS4	585	mdanderson.org	37	15	73009145	73009145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	73009145	C	T	73009145	3	4	708	1	0	0	0	0	1	0	0	0	1339	739	26	2	381	2	BBS4	15	73009145	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	8991503	73009145	29522247	168	44688											
ST20	400410	mdanderson.org	37	15	80191332	80191332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	80191332	T	C	80191332	3	2	708	1	0	0	0	0	1	0	0	0	15225	1725	60	3	62	3	ST20	15	80191332	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	7182187	80191332	22340060	169	44689											
CHSY1	22856	mdanderson.org	37	15	101717680	101717680	+	Silent	SNP	G	G	T	rs8024370	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	101717680	G	T	101717680	2	4	708	1	0	0	0	0	0	0	0	1	3414	1219	43	4		4	CHSY1	15	101717680	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	21526348	101717680	813712	170	44690											
VPS35	55737	mdanderson.org	37	16	46702912	46702912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	46702912	C	T	46702912	3	4	708	1	0	0	0	0	1	0	0	0	17215	768	27	1	833	1	VPS35	16	46702912	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		46702912	43651841	171	44691											
SETD6	79918	mdanderson.org	37	16	58549932	58549932	+	Silent	SNP	T	T	C	rs4784046	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	58549932	T	C	58549932	2	2	708	1	0	0	0	0	0	0	0	1	14148	1722	60	3		3	SETD6	16	58549932	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	11847020	58549932	31804821	172	44692											
LCAT	3931	mdanderson.org	37	16	67974190	67974190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	67974190	C	T	67974190	3	4	708	1	0	0	0	0	1	0	0	0	8665	681	24	2	386	2	LCAT	16	67974190	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	9424258	67974190	22380563	173	44693											
ATMIN	23300	broad.mit.edu	37	16	81078086	81078087	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	81078087	-	G	81078086	7	5	708	1	0	1	1	0	0	0	0	0	1110	639	23	0	1997	0	ATMIN	16	81078086	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	13103896	81078086	9276667	174	44694											
ZZEF1	23140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	3917706	3917706	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	3917706	T	A	3917706	3	1	708	1	0	0	0	0	1	0	0	0	18267	1667	58	5	660	5	ZZEF1	17	3917706	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		3917706	77277504	175	44695											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7579699	7579699	+	Splice_Site	SNP	C	C	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	7579699	C	A	7579699	5	1	708	1	0	0	0	0	0	0	1	0	16393	521	18	4	1209	4	TP53	17	7579699	Splice_Site	SNP	C	TCGA-KN-8433-01A-11D-2310-10	3661993	7579699	73615511	176	44696											
TBC1D26	353149	mdanderson.org	37	17	15642054	15642054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	15642054	A	G	15642054	3	3	708	1	0	0	0	0	1	0	0	0	15628	72	3	3	429	3	TBC1D26	17	15642054	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8062355	15642054	65553156	177	44697											
CCDC144NL	339184	mdanderson.org	37	17	20769996	20769996	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	20769996	C	A	20769996	4	1	708	1	0	0	0	0	0	1	0	0	2781	690	24	4	237	4	CCDC144NL	17	20769996	Nonsense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	5127942	20769996	60425214	178	44698											
KRTAP4-8	728224	mdanderson.org	37	17	39254124	39254124	+	Silent	SNP	C	C	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	39254124	C	G	39254124	2	3	708	1	0	0	0	0	0	0	0	1	8563	465	17	4		4	KRTAP4-8	17	39254124	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	18484128	39254124	41941086	179	44699	621	2									
KRTAP4-8	728224	mdanderson.org	37	17	39254127	39254127	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	39254127	A	G	39254127	2	3	708	1	0	0	0	0	0	0	0	1	8563	157	6	3		3	KRTAP4-8	17	39254127	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3	39254127	41941083	180	44700	621	2									
ITGB4	3691	mdanderson.org	37	17	73752787	73752787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	73752787	T	C	73752787	3	2	708	1	0	0	0	0	1	0	0	0	7904	1551	54	3	5205	3	ITGB4	17	73752787	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	34498660	73752787	7442423	181	44701											
DNAH17	8632	mdanderson.org	37	17	76547619	76547619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	76547619	T	C	76547619	3	2	708	1	0	0	0	0	1	0	0	0	4603	1792	62	3	11263	3	DNAH17	17	76547619	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2794832	76547619	4647591	182	44702											
KCTD1	284252	hgsc.bcm.edu	37	18	24127106	24127106	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	24127106	C	T	24127106	2	4	708	1	0	0	0	0	0	0	0	1	8103	639	23	1		1	KCTD1	18	24127106	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10		24127106	53950142	183	44703											
HCN2	610	mdanderson.org	37	19	605093	605093	+	Silent	SNP	G	G	A	rs55839339	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	605093	G	A	605093	2	1	708	1	0	0	0	0	0	0	0	1	7004	1103	39	1		1	HCN2	19	605093	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10		605093	58523890	184	44704											
PLIN4	729359	mdanderson.org	37	19	4512514	4512514	+	Silent	SNP	G	G	C	rs7259625	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	4512514	G	C	4512514	2	2	708	1	0	0	0	0	0	0	0	1	12099	1074	38	4		4	PLIN4	19	4512514	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	3907421	4512514	54616469	185	44705											
MUC16	94025	mdanderson.org	37	19	9002597	9002597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	9002597	C	T	9002597	3	4	708	1	0	0	0	0	1	0	0	0	9980	855	30	2	3440	2	MUC16	19	9002597	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	4490083	9002597	50126386	186	44706											
MUC16	94025	mdanderson.org	37	19	9012816	9012816	+	Silent	SNP	G	G	A	rs4992695	alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	9012816	G	A	9012816	2	1	708	1	0	0	0	0	0	0	0	1	9980	958	34	2		2	MUC16	19	9012816	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	10219	9012816	50116167	187	44707	622	2									
MUC16	94025	mdanderson.org	37	19	9012819	9012819	+	Silent	SNP	T	T	A	rs4992694	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	9012819	T	A	9012819	2	1	708	1	0	0	0	0	0	0	0	1	9980	1567	55	5		5	MUC16	19	9012819	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	3	9012819	50116164	188	44708	622	2									
PRDX2	7001	mdanderson.org	37	19	12911040	12911040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	12911040	A	G	12911040	3	3	708	1	0	0	0	0	1	0	0	0	12475	69	3	3	277	3	PRDX2	19	12911040	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3898221	12911040	46217943	189	44709											
RNASEH2A	10535	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	12917591	12917591	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	12917591	A	T	12917591	3	4	708	1	0	0	0	0	1	0	0	0	13425	304	11	5	106	5	RNASEH2A	19	12917591	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	6551	12917591	46211392	190	44710											
CACNA1A	773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	13397774	13397774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	13397774	G	T	13397774	3	4	708	1	0	0	0	0	1	0	0	0	2540	1252	44	4	4638	4	CACNA1A	19	13397774	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	480183	13397774	45731209	191	44711											
C19orf44	84167	mdanderson.org	37	19	16611835	16611835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	16611835	T	C	16611835	3	2	708	1	0	0	0	0	1	0	0	0	1929	1551	54	3	234	3	C19orf44	19	16611835	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	3214061	16611835	42517148	192	44712											
MYO9B	4650	hgsc.bcm.edu	37	19	17294679	17294680	+	Splice_Site	INS	-	-	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	17294680	-	A	17294679	8	5	708	1	0	1	1	0	0	0	1	0	10092	1652	57	0	2433	0	MYO9B	19	17294679	Splice_Site	INS	-	TCGA-KN-8433-01A-11D-2310-10	682844	17294679	41834304	193	44713											
ZNF493	284443	mdanderson.org	37	19	21606001	21606001	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	21606001	A	G	21606001	2	3	708	1	0	0	0	0	0	0	0	1	17956	40	2	3		3	ZNF493	19	21606001	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4311322	21606001	37522982	194	44714											
ZNF208	7757	mdanderson.org	37	19	22155691	22155691	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	22155691	A	G	22155691	2	3	708	1	0	0	0	0	0	0	0	1	17778	446	16	3		3	ZNF208	19	22155691	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	549690	22155691	36973292	195	44715	623	2									
ZNF208	7757	mdanderson.org	37	19	22155696	22155696	+	Missense_Mutation	SNP	T	T	C	rs201427226		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	22155696	T	C	22155696	3	2	708	1	0	0	0	0	1	0	0	0	17778	1493	52	3	1706	3	ZNF208	19	22155696	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	5	22155696	36973287	196	44716	623	2									
ZNF208	7757	mdanderson.org	37	19	22155715	22155715	+	Silent	SNP	G	G	A	rs201994264		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	22155715	G	A	22155715	2	1	708	1	0	0	0	0	0	0	0	1	17778	1252	44	2		2	ZNF208	19	22155715	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	19	22155715	36973268	197	44717											
ZNF676	163223	mdanderson.org	37	19	22363172	22363172	+	Silent	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	22363172	G	A	22363172	2	1	708	1	0	0	0	0	0	0	0	1	18095	1372	48	2		2	ZNF676	19	22363172	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	207457	22363172	36765811	198	44718											
ZNF536	9745	mdanderson.org	37	19	30936335	30936335	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	30936335	T	C	30936335	2	2	708	1	0	0	0	0	0	0	0	1	17986	1654	58	3		3	ZNF536	19	30936335	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	8573163	30936335	28192648	199	44719											
KIAA0355	9710	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	34818401	34818401	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	34818401	C	T	34818401	4	4	708	1	0	0	0	0	0	1	0	0	8177	827	29	2	791	2	KIAA0355	19	34818401	Nonsense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	3882066	34818401	24310582	200	44720											
COX7A1	1346	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	36642385	36642385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	36642385	T	C	36642385	3	2	708	1	0	0	0	0	1	0	0	0	3781	1667	58	3	81	3	COX7A1	19	36642385	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1823984	36642385	22486598	201	44721											
MRPS12	6183	broad.mit.edu	37	19	39421914	39421914	+	Splice_Site	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	39421914	A	G	39421914	5	3	708	1	0	0	0	0	0	0	1	0	9830	202	7	3		3	MRPS12	19	39421914	Splice_Site	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2779529	39421914	19707069	202	44722											
SNRPA	6626	mdanderson.org	37	19	41269564	41269564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	41269564	T	C	41269564	3	2	708	1	0	0	0	0	1	0	0	0	14872	1667	58	3	691	3	SNRPA	19	41269564	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1847650	41269564	17859419	203	44723											
PVRL2	5819	mdanderson.org	37	19	45391603	45391603	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	45391603	A	G	45391603	2	3	708	1	0	0	0	0	0	0	0	1	12853	69	3	3		3	PVRL2	19	45391603	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4122039	45391603	13737380	204	44724											
LILRB3	11025	mdanderson.org	37	19	54725992	54725992	+	Silent	SNP	G	G	A	rs148339740	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	54725992	G	A	54725992	2	1	708	1	0	0	0	0	0	0	0	1	8799	1310	46	2		2	LILRB3	19	54725992	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	9334389	54725992	4402991	205	44725											
LILRB2	10288	mdanderson.org	37	19	54778570	54778570	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	54778570	C	T	54778570	2	4	708	1	0	0	0	0	0	0	0	1	8798	796	28	2		2	LILRB2	19	54778570	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	52578	54778570	4350413	206	44726											
LILRB1	10859	mdanderson.org	37	19	55148076	55148076	+	Silent	SNP	G	G	A	rs62133433	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	55148076	G	A	55148076	2	1	708	1	0	0	0	0	0	0	0	1	8797	1103	39	1		1	LILRB1	19	55148076	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	369506	55148076	3980907	207	44727											
LILRB4	11006	mdanderson.org	37	19	55179145	55179145	+	Missense_Mutation	SNP	A	A	T	rs61738946	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	55179145	A	T	55179145	3	4	708	1	0	0	0	0	1	0	0	0	8800	272	10	5	1143	5	LILRB4	19	55179145	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	31069	55179145	3949838	208	44728											
ZSCAN5A	79149	mdanderson.org	37	19	56734014	56734014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	56734014	T	C	56734014	3	2	708	1	0	0	0	0	1	0	0	0	18250	1579	55	3	813	3	ZSCAN5A	19	56734014	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1554869	56734014	2394969	209	44729											
ZNF17	7565	mdanderson.org	37	19	57931172	57931172	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	57931172	A	G	57931172	2	3	708	1	0	0	0	0	0	0	0	1	17755	233	9	3		3	ZNF17	19	57931172	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1197158	57931172	1197811	210	44730											
POFUT1	23509	mdanderson.org	37	20	30804433	30804433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	30804433	T	C	30804433	3	2	708	1	0	0	0	0	1	0	0	0	12190	1493	52	3	465	3	POFUT1	20	30804433	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		30804433	32221087	211	44731											
SLA2	84174	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	20	35262937	35262937	+	Silent	SNP	G	G	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	35262937	G	A	35262937	2	1	708	1	0	0	0	0	0	0	0	1	14377	1103	39	1		1	SLA2	20	35262937	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	4458504	35262937	27762583	212	44732											
ZNF334	55713	mdanderson.org	37	20	45131515	45131515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	45131515	T	C	45131515	3	2	708	1	0	0	0	0	1	0	0	0	17863	1609	56	3	1583	3	ZNF334	20	45131515	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	9868578	45131515	17894005	213	44733											
PFDN4	5203	mdanderson.org	37	20	52830988	52830988	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	52830988	A	G	52830988	2	3	708	1	0	0	0	0	0	0	0	1	11764	69	3	3		3	PFDN4	20	52830988	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	7699473	52830988	10194532	214	44734											
UCKL1	54963	broad.mit.edu	37	20	62576011	62576011	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	-	62576011	T	-	62576011	7	5	708	1	0	1	0	1	0	0	0	0	16937	1551	54	0	955	0	UCKL1	20	62576011	Frame_Shift_Del	DEL	T	TCGA-KN-8433-01A-11D-2310-10	9745023	62576011	449509	215	44735											
NRIP1	8204	mdanderson.org	37	21	16338989	16338989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	16338989	T	C	16338989	3	2	708	1	0	0	0	0	1	0	0	0	10659	1783	62	3	1955	3	NRIP1	21	16338989	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		16338989	31790906	216	44736											
TMPRSS15	5651	mdanderson.org	37	21	19726118	19726118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	19726118	A	G	19726118	3	3	708	1	0	0	0	0	1	0	0	0	16258	72	3	3	2184	3	TMPRSS15	21	19726118	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3387129	19726118	28403777	217	44737											
SON	6651	mdanderson.org	37	21	34924913	34924913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	34924913	T	C	34924913	3	2	708	1	0	0	0	0	1	0	0	0	14939	1667	58	3	3386	3	SON	21	34924913	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	15198795	34924913	13204982	218	44738											
RFPL1	5988	mdanderson.org	37	22	29837976	29837976	+	Silent	SNP	C	C	A	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	29837976	C	A	29837976	2	1	708	1	0	0	0	0	0	0	0	1	13266	900	32	4		4	RFPL1	22	29837976	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10		29837976	21466590	219	44739											
SGSM3	27352	mdanderson.org	37	22	40802191	40802191	+	Silent	SNP	G	G	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	40802191	G	T	40802191	2	4	708	1	0	0	0	0	0	0	0	1	14237	1306	46	4		4	SGSM3	22	40802191	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	10964215	40802191	10502375	220	44740											
CYP2D6	1565	mdanderson.org	37	22	42525176	42525176	+	Missense_Mutation	SNP	C	C	A	rs1135823		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	A	42525176	C	A	42525176	3	1	708	1	0	0	0	0	1	0	0	0	4171	739	26	4	1157	4	CYP2D6	22	42525176	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	1722985	42525176	8779390	221	44741	624	2									
CYP2D6	1565	mdanderson.org	37	22	42525182	42525182	+	Missense_Mutation	SNP	A	A	T	rs1135822		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	42525182	A	T	42525182	3	4	708	1	0	0	0	0	1	0	0	0	4171	43	2	5	1163	5	CYP2D6	22	42525182	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	6	42525182	8779384	222	44742	624	2									
RRP7A	27341	mdanderson.org	37	22	42910784	42910784	+	Silent	SNP	C	C	T	rs2142829	bycluster;byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	42910784	C	T	42910784	2	4	708	1	0	0	0	0	0	0	0	1	13702	579	20	2		2	RRP7A	22	42910784	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	385602	42910784	8393782	223	44743											
NLGN4X	57502	mdanderson.org	37	X	5810997	5810997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	5810997	A	G	5810997	3	3	708	1	0	0	0	0	1	0	0	0	10471	333	12	3	142	3	NLGN4X	23	5810997	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10		5810997	149459563	224	44744											
TLR7	51284	mdanderson.org	37	X	12905178	12905178	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	12905178	T	C	12905178	2	2	708	1	0	0	0	0	0	0	0	1	15968	1596	56	3		3	TLR7	23	12905178	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	7094181	12905178	142365382	225	44745											
FAM9C	171484	mdanderson.org	37	X	13061295	13061295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	13061295	T	C	13061295	3	2	708	1	0	0	0	0	1	0	0	0	5668	1435	50	3	386	3	FAM9C	23	13061295	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	156117	13061295	142209265	226	44746											
MBTPS2	51360	broad.mit.edu	37	X	21896681	21896681	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	-	21896681	A	-	21896681	7	5	708	1	0	1	0	1	0	0	0	0	9369	363	13	0	1166	0	MBTPS2	23	21896681	Frame_Shift_Del	DEL	A	TCGA-KN-8433-01A-11D-2310-10	8835386	21896681	133373879	227	44747											
CXorf22	170063	mdanderson.org	37	X	35974129	35974129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	35974129	T	C	35974129	3	2	708	1	0	0	0	0	1	0	0	0	4104	1725	60	3	1256	3	CXorf22	23	35974129	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	14077448	35974129	119296431	228	44748											
SYTL5	94122	broad.mit.edu	37	X	37932872	37932873	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	37932873	-	C	37932872	7	5	708	1	0	1	1	0	0	0	0	0	15498	43	2	0	489	0	SYTL5	23	37932872	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	1958743	37932872	117337688	229	44749											
SLC9A7	84679	mdanderson.org	37	X	46529082	46529082	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	46529082	A	G	46529082	2	3	708	1	0	0	0	0	0	0	0	1	14732	98	4	3		3	SLC9A7	23	46529082	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8596210	46529082	108741478	230	44750											
ZNF81	347344	mdanderson.org	37	X	47774692	47774692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	47774692	A	G	47774692	3	3	708	1	0	0	0	0	1	0	0	0	18186	43	2	3	661	3	ZNF81	23	47774692	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1245610	47774692	107495868	231	44751											
ZNF81	347344	mdanderson.org	37	X	47774819	47774819	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	47774819	A	G	47774819	2	3	708	1	0	0	0	0	0	0	0	1	18186	40	2	3		3	ZNF81	23	47774819	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	127	47774819	107495741	232	44752											
GPR173	54328	mdanderson.org	37	X	53106925	53106925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	53106925	A	G	53106925	3	3	708	1	0	0	0	0	1	0	0	0	6678	259	9	3	1124	3	GPR173	23	53106925	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	5332106	53106925	102163635	233	44753											
HSD17B10	3028	mdanderson.org	37	X	53458523	53458523	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	53458523	C	T	53458523	2	4	708	1	0	0	0	0	0	0	0	1	7386	697	25	2		2	HSD17B10	23	53458523	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	351598	53458523	101812037	234	44754											
TRO	7216	mdanderson.org	37	X	54955088	54955088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	54955088	A	G	54955088	3	3	708	1	0	0	0	0	1	0	0	0	16586	304	11	3	1973	3	TRO	23	54955088	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1496565	54955088	100315472	235	44755											
ZXDB	158586	mdanderson.org	37	X	57620759	57620759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	57620759	A	G	57620759	3	3	708	1	0	0	0	0	1	0	0	0	18263	246	9	3	2280	3	ZXDB	23	57620759	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2665671	57620759	97649801	236	44756											
GDPD2	54857	mdanderson.org	37	X	69645623	69645623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	69645623	C	T	69645623	3	4	708	1	0	0	0	0	1	0	0	0	6331	652	23	1	230	1	GDPD2	23	69645623	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	12024864	69645623	85624937	237	44757											
SLC7A3	84889	mdanderson.org	37	X	70147758	70147758	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	70147758	A	G	70147758	2	3	708	1	0	0	0	0	0	0	0	1	14711	59	3	3		3	SLC7A3	23	70147758	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	502135	70147758	85122802	238	44758											
HDX	139324	mdanderson.org	37	X	83616516	83616516	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	83616516	T	C	83616516	2	2	708	1	0	0	0	0	0	0	0	1	7033	1606	56	3		3	HDX	23	83616516	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	13468758	83616516	71654044	239	44759											
HNRNPH2	3188	mdanderson.org	37	X	100668187	100668187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	100668187	A	G	100668187	3	3	708	1	0	0	0	0	1	0	0	0	7274	43	2	3	1213	3	HNRNPH2	23	100668187	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	17051671	100668187	54602373	240	44760											
TCEAL2	140597	mdanderson.org	37	X	101382406	101382406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	101382406	T	C	101382406	3	2	708	1	0	0	0	0	1	0	0	0	15683	1609	56	3	606	3	TCEAL2	23	101382406	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	714219	101382406	53888154	241	44761											
KLHL13	90293	mdanderson.org	37	X	117053557	117053557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	117053557	T	C	117053557	3	2	708	1	0	0	0	0	1	0	0	0	8376	1667	58	3	1486	3	KLHL13	23	117053557	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	15671151	117053557	38217003	242	44762											
GLUD2	2747	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	120182071	120182071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	120182071	C	T	120182071	3	4	708	1	0	0	0	0	1	0	0	0	6484	652	23	1	535	1	GLUD2	23	120182071	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	3128514	120182071	35088489	243	44763											
GPR112	139378	mdanderson.org	37	X	135494443	135494443	+	Silent	SNP	T	T	C	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	C	135494443	T	C	135494443	2	2	708	1	0	0	0	0	0	0	0	1	6636	1780	62	3		3	GPR112	23	135494443	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	15312372	135494443	19776117	244	44764											
MCF2	4168	mdanderson.org	37	X	138695406	138695406	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	138695406	A	G	138695406	2	3	708	1	0	0	0	0	0	0	0	1	9385	59	3	3		3	MCF2	23	138695406	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3200963	138695406	16575154	245	44765											
MAGEC1	9947	mdanderson.org	37	X	140993912	140993912	+	Missense_Mutation	SNP	C	C	T	rs12558365	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	140993912	C	T	140993912	3	4	708	1	0	0	0	0	1	0	0	0	9187	855	30	2	728	2	MAGEC1	23	140993912	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2298506	140993912	14276648	246	44766											
MAGEC1	9947	mdanderson.org	37	X	140994381	140994381	+	Missense_Mutation	SNP	C	C	G	rs76145360	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	140994381	C	G	140994381	3	3	708	1	0	0	0	0	1	0	0	0	9187	477	17	4	1197	4	MAGEC1	23	140994381	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	469	140994381	14276179	247	44767											
SLITRK4	139065	mdanderson.org	37	X	142716870	142716870	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	142716870	A	G	142716870	2	3	708	1	0	0	0	0	0	0	0	1	14758	59	3	3		3	SLITRK4	23	142716870	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1722489	142716870	12553690	248	44768											
PRRG3	79057	broad.mit.edu	37	X	150869347	150869348	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	-	150869348	CT	-	150869347	7	5	708	1	0	1	0	1	0	0	0	0	12617	797	28	0	548	0	PRRG3	23	150869347	Frame_Shift_Del	DEL	CT	TCGA-KN-8433-01A-11D-2310-10	8152477	150869347	4401213	249	44769											
FLNA	2316	mdanderson.org	37	X	153578045	153578045	+	Silent	SNP	C	C	T	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	T	153578045	C	T	153578045	2	4	708	1	0	0	0	0	0	0	0	1	5940	610	22	2		2	FLNA	23	153578045	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2708698	153578045	1692515	250	44770											
F8	2157	mdanderson.org	37	X	154132764	154132764	+	Silent	SNP	A	A	G	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916	G	154132764	A	G	154132764	2	3	708	1	0	0	0	0	0	0	0	1	5352	233	9	3		3	F8	23	154132764	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	554719	154132764	1137796	251	44771											
PEX10	5192	ucsc.edu	37	1	2341848	2341848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	2341848	A	G	2341848	3	3	709	1	0	0	0	0	1	0	0	0	11743	304	11	3	905	3	PEX10	1	2341848	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10		2341848	246908773	1	44772											
GSTM5	2949	mdanderson.org	37	1	110256127	110256127	+	Missense_Mutation	SNP	G	G	A	rs75824084	bycluster	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	110256127	G	A	110256127	3	1	709	1	0	0	0	0	1	0	0	0	6848	1203	42	2	213	2	GSTM5	1	110256127	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	107914279	110256127	138994494	2	44773											
ADORA3	140	ucsc.edu;mdanderson.org;bcgsc.ca	37	1	112029261	112029261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	112029261	G	T	112029261	3	4	709	1	0	0	0	0	1	0	0	0	329	1368	48	4	236	4	ADORA3	1	112029261	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	1773134	112029261	137221360	3	44774											
BIRC6	57448	mdanderson.org	37	2	32641045	32641045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	32641045	G	A	32641045	3	1	709	1	0	0	0	0	1	0	0	0	1438	1290	45	2	2724	2	BIRC6	2	32641045	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10		32641045	210558328	4	44775											
TBC1D5	9779	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	17413592	17413592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	17413592	C	T	17413592	3	4	709	1	0	0	0	0	1	0	0	0	15635	922	32	2	1527	2	TBC1D5	3	17413592	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10		17413592	180608838	5	44776											
SLC26A6	65010	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	48669762	48669762	+	Silent	SNP	G	G	A	rs146756914		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	48669762	G	A	48669762	2	1	709	1	0	0	0	0	0	0	0	1	14534	1136	40	1		1	SLC26A6	3	48669762	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	31256170	48669762	149352668	6	44777											
SPCS1	28972	mdanderson.org	37	3	52740182	52740182	+	Missense_Mutation	SNP	C	C	G	rs6617	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	52740182	C	G	52740182	3	3	709	1	0	0	0	0	1	0	0	0	15035	507	18	4	123	4	SPCS1	3	52740182	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	4070420	52740182	145282248	7	44778											
MASP1	5648	broad.mit.edu	37	3	186978580	186978581	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	186978581	-	G	186978580	7	5	709	1	0	1	1	0	0	0	0	0	9329	188	7	0	2600	0	MASP1	3	186978580	Frame_Shift_Ins	INS	-	TCGA-KN-8434-01A-11D-2310-10	134238398	186978580	11043850	8	44779											
MUC4	4585	mdanderson.org	37	3	195513203	195513203	+	Missense_Mutation	SNP	C	C	T	rs77879173		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	195513203	C	T	195513203	3	4	709	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195513203	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	8534623	195513203	2509227	9	44780											
SENP5	205564	broad.mit.edu;hgsc.bcm.edu	37	3	196613140	196613142	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	-	196613142	CTC	-	196613140	7	5	709	1	0	1	0	1	0	0	0	0	14062	913	32	0	1090	0	SENP5	3	196613140	In_Frame_Del	DEL	CTC	TCGA-KN-8434-01A-11D-2310-10	1099937	196613140	1409290	10	44781	625	2									
SENP5	205564	bcgsc.ca	37	3	196613141	196613143	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	-	196613143	CTC	-	196613141	7	5	709	1	0	1	0	1	0	0	0	0	14062	1538	54	0	1091	0	SENP5	3	196613141	In_Frame_Del	DEL	CTC	TCGA-KN-8434-01A-11D-2310-10	1	196613141	1409289	11	44782	625	2									
NAP1L5	266812	mdanderson.org	37	4	89618837	89618837	+	Silent	SNP	T	T	C	rs710834	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	89618837	T	C	89618837	2	2	709	1	0	0	0	0	0	0	0	1	10167	1567	55	3		3	NAP1L5	4	89618837	Silent	SNP	T	TCGA-KN-8434-01A-11D-2310-10		89618837	101535439	12	44783											
DDX60	55601	broad.mit.edu	37	4	169196590	169196590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	169196590	C	T	169196590	3	4	709	1	0	0	0	0	1	0	0	0	4380	652	23	1	3020	1	DDX60	4	169196590	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	79577753	169196590	21957686	13	44784											
SPINK5	11005	broad.mit.edu	37	5	147499644	147499644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	147499644	C	T	147499644	3	4	709	1	0	0	0	0	1	0	0	0	15074	643	23	1	2484	1	SPINK5	5	147499644	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10		147499644	33415616	14	44785											
GABRA1	2554	ucsc.edu	37	5	161324123	161324123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	161324123	A	G	161324123	3	3	709	1	0	0	0	0	1	0	0	0	6167	247	9	3	1100	3	GABRA1	5	161324123	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	13824479	161324123	19591137	15	44786											
FOXI1	2299	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	5	169533097	169533097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	169533097	C	T	169533097	3	4	709	1	0	0	0	0	1	0	0	0	6016	759	27	1	138	1	FOXI1	5	169533097	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	8208974	169533097	11382163	16	44787											
DST	667	hgsc.bcm.edu	37	6	56335065	56335065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	56335065	C	T	56335065	3	4	709	1	0	0	0	0	1	0	0	0	4785	768	27	1	1079	1	DST	6	56335065	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10		56335065	114780002	17	44788											
HINT3	135114	ucsc.edu	37	6	126288134	126288134	+	Silent	SNP	A	A	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	126288134	A	G	126288134	2	3	709	1	0	0	0	0	0	0	0	1	7120	69	3	3		3	HINT3	6	126288134	Silent	SNP	A	TCGA-KN-8434-01A-11D-2310-10	69953069	126288134	44826933	18	44789											
RAET1G	353091	mdanderson.org	37	6	150240697	150240697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	150240697	A	G	150240697	3	3	709	1	0	0	0	0	1	0	0	0	13013	449	16	3	679	3	RAET1G	6	150240697	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	23952563	150240697	20874370	19	44790											
AUTS2	26053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	70231281	70231281	+	Silent	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	70231281	C	T	70231281	2	4	709	1	0	0	0	0	0	0	0	1	1225	845	30	2		2	AUTS2	7	70231281	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10		70231281	88907382	20	44791											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	82544701	82544701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	82544701	A	T	82544701	3	4	709	1	0	0	0	0	1	0	0	0	11590	275	10	5	2920	5	PCLO	7	82544701	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	12313420	82544701	76593962	21	44792											
SLC26A5	375611	bcgsc.ca	37	7	103038430	103038430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	103038430	A	G	103038430	3	3	709	1	0	0	0	0	1	0	0	0	14533	14	1	3	1403	3	SLC26A5	7	103038430	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	20493729	103038430	56100233	22	44793											
CHRM2	1129	broad.mit.edu	37	7	136699614	136699614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	136699614	T	A	136699614	3	1	709	1	0	0	0	0	1	0	0	0	3379	1464	51	5	4	5	CHRM2	7	136699614	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10	33661184	136699614	22439049	23	44794											
ZYX	7791	hgsc.bcm.edu	37	7	143078856	143078856	+	Silent	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	143078856	C	T	143078856	2	4	709	1	0	0	0	0	0	0	0	1	18266	610	22	2		2	ZYX	7	143078856	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10	6379242	143078856	16059807	24	44795											
C9orf131	138724	hgsc.bcm.edu;ucsc.edu	37	9	35044753	35044753	+	Silent	SNP	G	G	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	35044753	G	A	35044753	2	1	709	1	0	0	0	0	0	0	0	1	2459	1306	46	2		2	C9orf131	9	35044753	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10		35044753	106168678	25	44796											
PRUNE2	158471	broad.mit.edu	37	9	79320843	79320843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	79320843	T	C	79320843	3	2	709	1	0	0	0	0	1	0	0	0	12651	1551	54	3	2967	3	PRUNE2	9	79320843	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10	44276090	79320843	61892588	26	44797											
TMEFF1	8577	mdanderson.org	37	9	103235853	103235853	+	Silent	SNP	G	G	T	rs77849433		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	103235853	G	T	103235853	2	4	709	1	0	0	0	0	0	0	0	1	16025	1074	38	4		4	TMEFF1	9	103235853	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	23915010	103235853	37977578	27	44798											
TBC1D13	54662	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	131565713	131565713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	131565713	C	T	131565713	3	4	709	1	0	0	0	0	1	0	0	0	15614	739	26	2	758	2	TBC1D13	9	131565713	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	28329860	131565713	9647718	28	44799											
VENTX	27287	ucsc.edu;mdanderson.org;bcgsc.ca	37	10	135051543	135051543	+	Missense_Mutation	SNP	T	T	C	rs2240892	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	135051543	T	C	135051543	3	2	709	1	0	0	0	0	1	0	0	0	17165	1580	55	3	127	3	VENTX	10	135051543	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		135051543	483204	29	44800											
MUC6	4588	broad.mit.edu	37	11	1018714	1018714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	1018714	G	A	1018714	3	1	709	1	0	0	0	0	1	0	0	0	9987	1145	40	1	3244	1	MUC6	11	1018714	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10		1018714	133987802	30	44801											
MRGPRE	116534	mdanderson.org	37	11	3249552	3249552	+	Missense_Mutation	SNP	C	C	T	rs4391795	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	3249552	C	T	3249552	3	4	709	1	0	0	0	0	1	0	0	0	9771	652	23	1	464	1	MRGPRE	11	3249552	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	2230838	3249552	131756964	31	44802											
CDC42BPG	55561	hgsc.bcm.edu;ucsc.edu	37	11	64600192	64600192	+	Silent	SNP	C	C	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	64600192	C	A	64600192	2	1	709	1	0	0	0	0	0	0	0	1	3076	726	26	4		4	CDC42BPG	11	64600192	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10	61350640	64600192	70406324	32	44803											
SIPA1	6494	hgsc.bcm.edu	37	11	65414344	65414344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	65414344	C	G	65414344	3	3	709	1	0	0	0	0	1	0	0	0	14341	903	32	4	1865	4	SIPA1	11	65414344	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	814152	65414344	69592172	33	44804											
RIN1	9610	mdanderson.org	37	11	66102088	66102088	+	Silent	SNP	G	G	A	rs3814740	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	66102088	G	A	66102088	2	1	709	1	0	0	0	0	0	0	0	1	13384	1103	39	1		1	RIN1	11	66102088	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	687744	66102088	68904428	34	44805											
ABCG4	64137	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	11	119024755	119024755	+	Silent	SNP	G	G	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	119024755	G	A	119024755	2	1	709	1	0	0	0	0	0	0	0	1	70	1020	36	2		2	ABCG4	11	119024755	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	52922667	119024755	15981761	35	44806											
TAS2R43	259289	mdanderson.org	37	12	11244603	11244603	+	Missense_Mutation	SNP	T	T	A	rs200999522	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	11244603	T	A	11244603	3	1	709	1	0	0	0	0	1	0	0	0	15593	1754	61	5	707	5	TAS2R43	12	11244603	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		11244603	122607292	36	44807											
PPP1R1A	5502	hgsc.bcm.edu	37	12	54982196	54982196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	54982196	G	A	54982196	3	1	709	1	0	0	0	0	1	0	0	0	12377	1087	38	1	466	1	PPP1R1A	12	54982196	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	43737593	54982196	78869699	37	44808											
PABPC3	5042	mdanderson.org	37	13	25670851	25670851	+	Missense_Mutation	SNP	A	A	G	rs75475407		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	25670851	A	G	25670851	3	3	709	1	0	0	0	0	1	0	0	0	11372	130	5	3	517	3	PABPC3	13	25670851	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10		25670851	89499027	38	44809											
CLN5	1203	mdanderson.org	37	13	77566090	77566090	+	Missense_Mutation	SNP	C	C	T	rs77416795		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	77566090	C	T	77566090	3	4	709	1	0	0	0	0	1	0	0	0	3546	768	27	1	6	1	CLN5	13	77566090	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	51895239	77566090	37603788	39	44810											
DOCK9	23348	broad.mit.edu	37	13	99476685	99476685	+	Silent	SNP	T	T	C	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	99476685	T	C	99476685	2	2	709	1	0	0	0	0	0	0	0	1	4696	1606	56	3		3	DOCK9	13	99476685	Silent	SNP	T	TCGA-KN-8434-01A-11D-2310-10	21910595	99476685	15693193	40	44811											
KCNH5	27133	broad.mit.edu	37	14	63316516	63316516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	63316516	T	C	63316516	3	2	709	1	0	0	0	0	1	0	0	0	8042	1406	49	3	1592	3	KCNH5	14	63316516	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		63316516	44033024	41	44812											
MESDC1	59274	mdanderson.org	37	15	81294774	81294774	+	Silent	SNP	G	G	C	rs11541231	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	81294774	G	C	81294774	2	2	709	1	0	0	0	0	0	0	0	1	9487	1045	37	4		4	MESDC1	15	81294774	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10		81294774	21236618	42	44813											
PKD1	5310	hgsc.bcm.edu	37	16	2139968	2139968	+	Silent	SNP	G	G	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	2139968	G	A	2139968	2	1	709	1	0	0	0	0	0	0	0	1	11970	1219	43	2		2	PKD1	16	2139968	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10		2139968	88214785	43	44814											
NTN3	4917	bcgsc.ca	37	16	2523296	2523296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	2523296	A	G	2523296	3	3	709	1	0	0	0	0	1	0	0	0	10708	275	10	3	1309	3	NTN3	16	2523296	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	383328	2523296	87831457	44	44815											
XYLT1	64131	ucsc.edu;mdanderson.org;bcgsc.ca	37	16	17235168	17235168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	17235168	G	A	17235168	3	1	709	1	0	0	0	0	1	0	0	0	17475	1087	38	1	1474	1	XYLT1	16	17235168	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	14711872	17235168	73119585	45	44816											
ARMC5	79798	broad.mit.edu	37	16	31471187	31471189	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	-	31471189	GTC	-	31471187	7	5	709	1	0	1	0	1	0	0	0	0	954	1364	48	0	344	0	ARMC5	16	31471187	In_Frame_Del	DEL	GTC	TCGA-KN-8434-01A-11D-2310-10	14236019	31471187	58883566	46	44817											
POLR2A	5430	broad.mit.edu	37	17	7404959	7404959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	7404959	T	C	7404959	3	2	709	1	0	0	0	0	1	0	0	0	12221	1551	54	3	2314	3	POLR2A	17	7404959	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		7404959	73790251	47	44818											
FXR2	9513	bcgsc.ca	37	17	7506235	7506235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	7506235	A	G	7506235	3	3	709	1	0	0	0	0	1	0	0	0	6123	72	3	3	1434	3	FXR2	17	7506235	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	101276	7506235	73688975	48	44819											
SHBG	6462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7534020	7534020	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	7534020	C	T	7534020	4	4	709	1	0	0	0	0	0	1	0	0	14282	876	31	1	236	1	SHBG	17	7534020	Nonsense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	27785	7534020	73661190	49	44820											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	7578507	7578507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	7578507	G	C	7578507	3	2	709	1	0	0	0	0	1	0	0	0	16393	1195	42	4	875	4	TP53	17	7578507	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	44487	7578507	73616703	50	44821											
DNAH9	1770	ucsc.edu	37	17	11865498	11865498	+	Silent	SNP	A	A	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	11865498	A	G	11865498	2	3	709	1	0	0	0	0	0	0	0	1	4610	69	3	3		3	DNAH9	17	11865498	Silent	SNP	A	TCGA-KN-8434-01A-11D-2310-10	4286991	11865498	69329712	51	44822											
NLE1	54475	mdanderson.org	37	17	33469279	33469279	+	Missense_Mutation	SNP	G	G	C	rs1471615	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	33469279	G	C	33469279	3	2	709	1	0	0	0	0	1	0	0	0	10467	1203	42	4	1493	4	NLE1	17	33469279	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	21603781	33469279	47725931	52	44823											
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274432	39274432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	39274432	C	T	39274432	3	4	709	1	0	0	0	0	1	0	0	0	8556	478	17	2	455	2	KRTAP4-11	17	39274432	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	5805153	39274432	41920778	53	44824											
LPIN2	9663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	2937725	2937725	+	Missense_Mutation	SNP	G	G	A	rs146067222		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	2937725	G	A	2937725	3	1	709	1	0	0	0	0	1	0	0	0	8926	1116	39	1	1613	1	LPIN2	18	2937725	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10		2937725	75139523	54	44825											
SBNO2	22904	hgsc.bcm.edu;mdanderson.org	37	19	1108866	1108866	+	Silent	SNP	G	G	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	1108866	G	A	1108866	2	1	709	1	0	0	0	0	0	0	0	1	13876	1190	42	2		2	SBNO2	19	1108866	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10		1108866	58020117	55	44826											
DOT1L	84444	mdanderson.org	37	19	2226676	2226676	+	Missense_Mutation	SNP	G	G	A	rs3815308		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	2226676	G	A	2226676	3	1	709	1	0	0	0	0	1	0	0	0	4711	1116	39	1	4262	1	DOT1L	19	2226676	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	1117810	2226676	56902307	56	44827											
RAVER1	125950	mdanderson.org	37	19	10431799	10431799	+	Silent	SNP	G	G	T	rs281425	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	10431799	G	T	10431799	2	4	709	1	0	0	0	0	0	0	0	1	13107	1103	39	4		4	RAVER1	19	10431799	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	8205123	10431799	48697184	57	44828											
CC2D1A	54862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	14024412	14024412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	14024412	G	C	14024412	3	2	709	1	0	0	0	0	1	0	0	0	2728	971	34	4	731	4	CC2D1A	19	14024412	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	3592613	14024412	45104571	58	44829											
GLTSCR1	29998	mdanderson.org	37	19	48183114	48183114	+	Silent	SNP	A	A	G	rs2914438		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	48183114	A	G	48183114	2	3	709	1	0	0	0	0	0	0	0	1	6481	146	6	3		3	GLTSCR1	19	48183114	Silent	SNP	A	TCGA-KN-8434-01A-11D-2310-10	34158702	48183114	10945869	59	44830											
RBCK1	10616	broad.mit.edu	37	20	400073	400074	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	400074	-	G	400073	7	5	709	1	0	1	1	0	0	0	0	0	13120	639	23	0	580	0	RBCK1	20	400073	Frame_Shift_Ins	INS	-	TCGA-KN-8434-01A-11D-2310-10		400073	62625447	60	44831											
RIPK4	54101	ucsc.edu	37	21	43187089	43187089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	43187089	T	C	43187089	3	2	709	1	0	0	0	0	1	0	0	0	13396	1609	56	3	2273	3	RIPK4	21	43187089	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		43187089	4942806	61	44832											
MN1	4330	broad.mit.edu	37	22	28193289	28193289	+	Silent	SNP	C	C	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	28193289	C	T	28193289	2	4	709	1	0	0	0	0	0	0	0	1	9680	755	27	1		1	MN1	22	28193289	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10		28193289	23111277	62	44833											
RHBDD3	25807	broad.mit.edu	37	22	29661514	29661515	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	C	29661515	-	C	29661514	7	5	709	1	0	1	1	0	0	0	0	0	13331	1190	42	0	1078	0	RHBDD3	22	29661514	Frame_Shift_Ins	INS	-	TCGA-KN-8434-01A-11D-2310-10	1468225	29661514	21643052	63	44834											
DMD	1756	broad.mit.edu	37	X	31645807	31645807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	T	31645807	G	T	31645807	3	4	709	1	0	0	0	0	1	0	0	0	4582	962	34	4	3105	4	DMD	23	31645807	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10		31645807	123624753	64	44835											
TBC1D25	4943	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	48418349	48418349	+	Silent	SNP	C	C	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	48418349	C	A	48418349	2	1	709	1	0	0	0	0	0	0	0	1	15627	668	24	4		4	TBC1D25	23	48418349	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10	16772542	48418349	106852211	65	44836											
GATA1	2623	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	48652278	48652278	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	G	48652278	C	G	48652278	3	3	709	1	0	0	0	0	1	0	0	0	6260	527	19	4	967	4	GATA1	23	48652278	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	233929	48652278	106618282	66	44837											
IGSF1	3547	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	130409464	130409464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92	A	130409464	G	A	130409464	3	1	709	1	0	0	0	0	1	0	0	0	7603	1029	36	2	858	2	IGSF1	23	130409464	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	81757186	130409464	24861096	67	44838											
ZBTB48	3104	ucsc.edu;bcgsc.ca	37	1	6641321	6641321	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	6641321	G	T	6641321	4	4	710	1	0	0	0	0	0	1	0	0	17561	943	33	4	654	4	ZBTB48	1	6641321	Nonsense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		6641321	242609300	1	44839											
PRAMEF7	441871	mdanderson.org	37	1	12980074	12980074	+	Silent	SNP	T	T	A	rs61778323		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	12980074	T	A	12980074	2	1	710	1	0	0	0	0	0	0	0	1	12449	1683	59	5		5	PRAMEF7	1	12980074	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	6338753	12980074	236270547	2	44840											
MED8	112950	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	1	43852260	43852260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	43852260	C	T	43852260	3	4	710	1	0	0	0	0	1	0	0	0	9460	695	24	2	432	2	MED8	1	43852260	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	30872186	43852260	205398361	3	44841											
COL11A1	1301	ucsc.edu	37	1	103453264	103453264	+	Silent	SNP	T	T	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	103453264	T	C	103453264	2	2	710	1	0	0	0	0	0	0	0	1	3669	1606	56	3		3	COL11A1	1	103453264	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	59601004	103453264	145797357	4	44842											
RBM15	64783	broad.mit.edu;hgsc.bcm.edu	37	1	110882695	110882713	+	Frame_Shift_Del	DEL	GGCGGCCAGAGGACGCGCG	GGCGGCCAGAGGACGCGCG	-	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	GGCGGCCAGAGGACGCGCG	GGCGGCCAGAGGACGCGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	-	110882713	GGCGGCCAGAGGACGCGCG	-	110882695	7	5	710	1	0	1	0	1	0	0	0	0	13129	1116	39	0	670	0	RBM15	1	110882695	Frame_Shift_Del	DEL	GGCGGCCAGAGGACGCGCG	TCGA-KN-8435-01A-11D-2310-10	7429431	110882695	138367926	5	44843	626	2									
RBM15	64783	bcgsc.ca	37	1	110882696	110882714	+	Frame_Shift_Del	DEL	GGCGGCCAGAGGACGCGCG	GGCGGCCAGAGGACGCGCG	-	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	GGCGGCCAGAGGACGCGCG	GGCGGCCAGAGGACGCGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	-	110882714	GGCGGCCAGAGGACGCGCG	-	110882696	7	5	710	1	0	1	0	1	0	0	0	0	13129	1190	42	0	671	0	RBM15	1	110882696	Frame_Shift_Del	DEL	GGCGGCCAGAGGACGCGCG	TCGA-KN-8435-01A-11D-2310-10	1	110882696	138367925	6	44844	626	2									
FCRLA	84824	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	161677131	161677131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	161677131	T	C	161677131	3	2	710	1	0	0	0	0	1	0	0	0	5807	1580	55	3	130	3	FCRLA	1	161677131	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	50794435	161677131	87573490	7	44845											
COL3A1	1281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	189873717	189873717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	189873717	G	A	189873717	3	1	710	1	0	0	0	0	1	0	0	0	3690	1261	44	2	3783	2	COL3A1	2	189873717	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		189873717	53325656	8	44846											
CYP20A1	57404	bcgsc.ca	37	2	204161576	204161576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	204161576	A	G	204161576	3	3	710	1	0	0	0	0	1	0	0	0	4154	246	9	3	1384	3	CYP20A1	2	204161576	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	14287859	204161576	39037797	9	44847											
AQP12A	375318	mdanderson.org	37	2	241631668	241631668	+	Silent	SNP	T	T	C	rs4343462	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	241631668	T	C	241631668	2	2	710	1	0	0	0	0	0	0	0	1	824	1722	60	3		3	AQP12A	2	241631668	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	37470092	241631668	1567705	10	44848											
CLASP2	23122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	33686372	33686372	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	33686372	A	T	33686372	3	4	710	1	0	0	0	0	1	0	0	0	3457	333	12	5	3905	5	CLASP2	3	33686372	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10		33686372	164336058	11	44849											
MON1A	84315	broad.mit.edu	37	3	49967246	49967246	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	-	49967246	G	-	49967246	7	5	710	1	0	1	0	1	0	0	0	0	9705	971	34	0	1908	0	MON1A	3	49967246	Frame_Shift_Del	DEL	G	TCGA-KN-8435-01A-11D-2310-10	16280874	49967246	148055184	12	44850											
ABHD10	55347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	111710501	111710501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	111710501	C	A	111710501	3	1	710	1	0	0	0	0	1	0	0	0	74	710	25	4	872	4	ABHD10	3	111710501	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	61743255	111710501	86311929	13	44851											
CCRL1	51554	broad.mit.edu	37	3	132320028	132320029	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	132320029	-	G	132320028	7	5	710	1	0	1	1	0	0	0	0	0	2951	644	23	0	789	0	CCRL1	3	132320028	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	20609527	132320028	65702402	14	44852											
C3orf33	285315	bcgsc.ca	37	3	155485327	155485327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	155485327	C	T	155485327	3	4	710	1	0	0	0	0	1	0	0	0	2225	797	28	2	438	2	C3orf33	3	155485327	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	23165299	155485327	42537103	15	44853											
MUC4	4585	mdanderson.org	37	3	195505791	195505791	+	Silent	SNP	A	A	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	195505791	A	T	195505791	2	4	710	1	0	0	0	0	0	0	0	1	9985	262	10	5		5	MUC4	3	195505791	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	40020464	195505791	2516639	16	44854			1	133		5	5	9309	N	T_G_C_A	1.436802e-08
MUC4	4585	mdanderson.org	37	3	195505849	195505849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	195505849	G	A	195505849	3	1	710	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195505849	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	58	195505849	2516581	17	44855			1	133		5	5	9309	N	T_G_C_A	1.436802e-08
MUC4	4585	mdanderson.org	37	3	195509515	195509515	+	Missense_Mutation	SNP	T	T	A	rs28438604		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	195509515	T	A	195509515	3	1	710	1	0	0	0	0	1	0	0	0	9985	1667	58	5		5	MUC4	3	195509515	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	3666	195509515	2512915	18	44856			1	133		5	5	9309	N	T_G_C_A	1.436802e-08
MUC4	4585	mdanderson.org	37	3	195509585	195509585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	195509585	C	T	195509585	3	4	710	1	0	0	0	0	1	0	0	0	9985	681	24	2		2	MUC4	3	195509585	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	70	195509585	2512845	19	44857			1	133		5	5	9309	N	T_G_C_A	1.436802e-08
MUC4	4585	mdanderson.org	37	3	195515099	195515099	+	Missense_Mutation	SNP	T	T	C	rs71321848	bycluster	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	195515099	T	C	195515099	3	2	710	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195515099	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	5514	195515099	2507331	20	44858			1	133		5	5	9309	N	T_G_C_A	1.436802e-08
PAK2	5062	mdanderson.org	37	3	196530013	196530013	+	Silent	SNP	A	A	G	rs73205842	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	196530013	A	G	196530013	2	3	710	1	0	0	0	0	0	0	0	1	11408	98	4	3		3	PAK2	3	196530013	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	1014914	196530013	1492417	21	44859											
NAT8L	339983	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2065597	2065597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	2065597	C	T	2065597	3	4	710	1	0	0	0	0	1	0	0	0	10188	536	19	1	662	1	NAT8L	4	2065597	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10		2065597	189088679	22	44860											
SMARCA5	8467	hgsc.bcm.edu	37	4	144442709	144442710	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	144442710	-	A	144442709	7	5	710	1	0	1	1	0	0	0	0	0	14784	1406	49	0	390	0	SMARCA5	4	144442709	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	142377112	144442709	46711567	23	44861	627	2									
SMARCA5	8467	bcgsc.ca	37	4	144442710	144442711	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	144442711	-	A	144442710	7	5	710	1	0	1	1	0	0	0	0	0	14784	352	13	0	391	0	SMARCA5	4	144442710	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	1	144442710	46711566	24	44862	627	2									
ETFDH	2110	mdanderson.org	37	4	159601752	159601752	+	Silent	SNP	A	A	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	159601752	A	G	159601752	2	3	710	1	0	0	0	0	0	0	0	1	5273	330	12	3		3	ETFDH	4	159601752	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	15159042	159601752	31552524	25	44863											
SLC25A46	91137	broad.mit.edu	37	5	110097244	110097244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	110097244	G	A	110097244	3	1	710	1	0	0	0	0	1	0	0	0	14524	1087	38	1	1049	1	SLC25A46	5	110097244	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		110097244	70818016	26	44864											
PCDHA6	56142	mdanderson.org	37	5	140208909	140208909	+	Silent	SNP	T	T	C	rs664837	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	140208909	T	C	140208909	2	2	710	1	0	0	0	0	0	0	0	1	11535	1693	59	3		3	PCDHA6	5	140208909	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	30111665	140208909	40706351	27	44865											
DOCK2	1794	mdanderson.org	37	5	169504743	169504743	+	Silent	SNP	T	T	C	rs1045168	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	169504743	T	C	169504743	2	2	710	1	0	0	0	0	0	0	0	1	4689	1654	58	3		3	DOCK2	5	169504743	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	29295834	169504743	11410517	28	44866											
DPCR1	135656	broad.mit.edu	37	6	30917845	30917845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	30917845	C	T	30917845	3	4	710	1	0	0	0	0	1	0	0	0	4714	594	21	2	1610	2	DPCR1	6	30917845	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10		30917845	140197222	29	44867											
CD109	135228	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	6	74520746	74520746	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	74520746	A	C	74520746	3	2	710	1	0	0	0	0	1	0	0	0	2965	246	9	5	3688	5	CD109	6	74520746	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	43602901	74520746	96594321	30	44868											
RIPPLY2	134701	broad.mit.edu	37	6	84567032	84567033	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	84567033	-	A	84567032	7	5	710	1	0	1	1	0	0	0	0	0	13398	594	21	0	325	0	RIPPLY2	6	84567032	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	10046286	84567032	86548035	31	44869											
GJA1	2697	mdanderson.org	37	6	121769050	121769050	+	Silent	SNP	T	T	C	rs2227883		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	121769050	T	C	121769050	2	2	710	1	0	0	0	0	0	0	0	1	6407	1490	52	3		3	GJA1	6	121769050	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	37202018	121769050	49346017	32	44870											
KIAA1244	57221	bcgsc.ca	37	6	138655499	138655499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	138655499	A	G	138655499	3	3	710	1	0	0	0	0	1	0	0	0	8224	72	3	3	5646	3	KIAA1244	6	138655499	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	16886449	138655499	32459568	33	44871											
DAGLB	221955	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	6452490	6452490	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	6452490	A	T	6452490	3	4	710	1	0	0	0	0	1	0	0	0	4229	330	12	5	509	5	DAGLB	7	6452490	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10		6452490	152686173	34	44872											
HOXA9	3205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	27204514	27204514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	27204514	T	C	27204514	3	2	710	1	0	0	0	0	1	0	0	0	7305	1609	56	3	263	3	HOXA9	7	27204514	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	20752024	27204514	131934149	35	44873											
ZHX1	11244	mdanderson.org	37	8	124267138	124267138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	124267138	T	C	124267138	3	2	710	1	0	0	0	0	1	0	0	0	17687	1551	54	3	1576	3	ZHX1	8	124267138	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10		124267138	22096884	36	44874											
CBWD6	644019	broad.mit.edu	37	9	69256826	69256827	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	69256827	-	C	69256826	7	5	710	1	0	1	1	0	0	0	0	0	2718	1783	62	0	934	0	CBWD6	9	69256826	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10		69256826	71956605	37	44875											
WNK2	65268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	95991992	95991992	+	Silent	SNP	C	C	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	95991992	C	G	95991992	2	3	710	1	0	0	0	0	0	0	0	1	17390	581	21	4		4	WNK2	9	95991992	Silent	SNP	C	TCGA-KN-8435-01A-11D-2310-10	26735166	95991992	45221439	38	44876											
STAM	8027	broad.mit.edu	37	10	17756602	17756603	+	In_Frame_Ins	INS	-	-	CCC	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	CCC	17756603	-	CCC	17756602	7	5	710	1	0	1	1	0	0	0	0	0	15260	1538	54	0	1500	0	STAM	10	17756602	In_Frame_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10		17756602	117778145	39	44877											
CHAT	1103	ucsc.edu	37	10	50827861	50827861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	50827861	A	G	50827861	3	3	710	1	0	0	0	0	1	0	0	0	3315	179	7	3	532	3	CHAT	10	50827861	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	33071259	50827861	84706886	40	44878											
JAKMIP3	282973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	133955457	133955457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	133955457	C	T	133955457	3	4	710	1	0	0	0	0	1	0	0	0	7949	643	23	1	1545	1	JAKMIP3	10	133955457	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	83127596	133955457	1579290	41	44879											
MUC6	4588	mdanderson.org	37	11	1018314	1018314	+	Missense_Mutation	SNP	G	G	A	rs200089063		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	1018314	G	A	1018314	3	1	710	1	0	0	0	0	1	0	0	0	9987	1261	44	2	2844	2	MUC6	11	1018314	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		1018314	133988202	42	44880											
KRTAP5-2	440021	mdanderson.org	37	11	1619368	1619368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	1619368	C	T	1619368	3	4	710	1	0	0	0	0	1	0	0	0	8568	478	17	2	424	2	KRTAP5-2	11	1619368	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	601054	1619368	133387148	43	44881											
OR6A2	8590	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	6816462	6816462	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	6816462	T	G	6816462	3	3	710	1	0	0	0	0	1	0	0	0	11193	1464	51	5	509	5	OR6A2	11	6816462	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	5197094	6816462	128190054	44	44882											
OR1S1	219959	broad.mit.edu;mdanderson.org	37	11	57982414	57982414	+	Silent	SNP	G	G	A	rs111386724	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	57982414	G	A	57982414	2	1	710	1	0	0	0	0	0	0	0	1	10979	1132	40	1		1	OR1S1	11	57982414	Silent	SNP	G	TCGA-KN-8435-01A-11D-2310-10	51165952	57982414	77024102	45	44883											
KRTAP5-10	387273	mdanderson.org	37	11	71276876	71276876	+	Silent	SNP	A	A	G	rs12788123		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	71276876	A	G	71276876	2	3	710	1	0	0	0	0	0	0	0	1	8566	69	3	3		3	KRTAP5-10	11	71276876	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	13294462	71276876	63729640	46	44884											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	108126988	108126988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	108126988	G	T	108126988	3	4	710	1	0	0	0	0	1	0	0	0	1109	1261	44	4	2221	4	ATM	11	108126988	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	36850112	108126988	26879528	47	44885											
SIK2	23235	broad.mit.edu	37	11	111594331	111594332	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	111594332	-	C	111594331	7	5	710	1	0	1	1	0	0	0	0	0	14331	1770	62	0	2317	0	SIK2	11	111594331	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	3467343	111594331	23412185	48	44886											
ALG9	79796	mdanderson.org	37	11	111657129	111657129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	111657129	C	T	111657129	3	4	710	1	0	0	0	0	1	0	0	0	524	603	21	2	11	2	ALG9	11	111657129	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	62798	111657129	23349387	49	44887											
KCNA6	3742	mdanderson.org	37	12	4920387	4920387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	4920387	G	A	4920387	3	1	710	1	0	0	0	0	1	0	0	0	8014	1145	40	1	1182	1	KCNA6	12	4920387	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		4920387	128931508	50	44888											
PRB2	653247	mdanderson.org	37	12	11546634	11546634	+	Silent	SNP	G	G	A	rs78796502		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	11546634	G	A	11546634	2	1	710	1	0	0	0	0	0	0	0	1	12453	1306	46	2		2	PRB2	12	11546634	Silent	SNP	G	TCGA-KN-8435-01A-11D-2310-10	6626247	11546634	122305261	51	44889											
LRRK2	120892	hgsc.bcm.edu	37	12	40707951	40707951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	40707951	G	A	40707951	3	1	710	1	0	0	0	0	1	0	0	0	9040	1087	38	1	4840	1	LRRK2	12	40707951	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	29161317	40707951	93143944	52	44890											
COL2A1	1280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	48379322	48379322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	48379322	G	A	48379322	3	1	710	1	0	0	0	0	1	0	0	0	3689	1232	43	2	2850	2	COL2A1	12	48379322	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	7671371	48379322	85472573	53	44891											
ZCCHC8	55596	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	122958438	122958438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	122958438	G	A	122958438	3	1	710	1	0	0	0	0	1	0	0	0	17606	1145	40	1	397	1	ZCCHC8	12	122958438	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	74579116	122958438	10893457	54	44892											
RTL1	388015	broad.mit.edu	37	14	101347140	101347141	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	101347141	-	C	101347140	7	5	710	1	0	1	1	0	0	0	0	0	13737	1203	42	0	94	0	RTL1	14	101347140	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10		101347140	6002400	55	44893											
EIF5	1983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	103802243	103802243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	103802243	T	C	103802243	3	2	710	1	0	0	0	0	1	0	0	0	5042	1522	53	3	48	3	EIF5	14	103802243	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	2455103	103802243	3547297	56	44894											
SLC28A2	9153	broad.mit.edu	37	15	45556950	45556951	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	45556951	-	G	45556950	7	5	710	1	0	1	1	0	0	0	0	0	14545	1580	55	0	708	0	SLC28A2	15	45556950	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10		45556950	56974442	57	44895											
ISLR	3671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	74467546	74467546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	74467546	G	T	74467546	3	4	710	1	0	0	0	0	1	0	0	0	7865	971	34	4	349	4	ISLR	15	74467546	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	28910596	74467546	28063846	58	44896											
VASN	114990	broad.mit.edu	37	16	4431910	4431910	+	Silent	SNP	C	C	T	rs200909451		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	4431910	C	T	4431910	2	4	710	1	0	0	0	0	0	0	0	1	17139	547	19	1		1	VASN	16	4431910	Silent	SNP	C	TCGA-KN-8435-01A-11D-2310-10		4431910	85922843	59	44897											
CCDC144NL	339184	mdanderson.org	37	17	20768816	20768816	+	Missense_Mutation	SNP	C	C	T	rs75656883		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	20768816	C	T	20768816	3	4	710	1	0	0	0	0	1	0	0	0	2781	478	17	2	91	2	CCDC144NL	17	20768816	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10		20768816	60426394	60	44898											
TMIGD1	388364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	28656457	28656457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	28656457	T	C	28656457	3	2	710	1	0	0	0	0	1	0	0	0	16242	1725	60	3	635	3	TMIGD1	17	28656457	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	7887641	28656457	52538753	61	44899											
C17orf98	388381	ucsc.edu	37	17	36997606	36997606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	36997606	T	C	36997606	3	2	710	1	0	0	0	0	1	0	0	0	1895	1792	62	3	439	3	C17orf98	17	36997606	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	8341149	36997606	44197604	62	44900											
KRTAP4-9	100132386	mdanderson.org	37	17	39262096	39262096	+	Silent	SNP	C	C	T	rs76327324	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	39262096	C	T	39262096	2	4	710	1	0	0	0	0	0	0	0	1	8564	581	21	2		2	KRTAP4-9	17	39262096	Silent	SNP	C	TCGA-KN-8435-01A-11D-2310-10	2264490	39262096	41933114	63	44901											
BRCA1	672	broad.mit.edu;mdanderson.org	37	17	41244425	41244425	+	Silent	SNP	T	T	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	41244425	T	C	41244425	2	2	710	1	0	0	0	0	0	0	0	1	1500	1799	63	3		3	BRCA1	17	41244425	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	1982329	41244425	39950785	64	44902											
CDC27	996	mdanderson.org	37	17	45214527	45214527	+	Missense_Mutation	SNP	T	T	C	rs62075618	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	45214527	T	C	45214527	3	2	710	1	0	0	0	0	1	0	0	0	3068	1406	49	3	594	3	CDC27	17	45214527	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	3970102	45214527	35980683	65	44903											
HEATR6	63897	broad.mit.edu	37	17	58156293	58156293	+	Splice_Site	SNP	G	G	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	58156293	G	C	58156293	5	2	710	1	0	0	0	0	0	0	1	0	7040	1247	43	4		4	HEATR6	17	58156293	Splice_Site	SNP	G	TCGA-KN-8435-01A-11D-2310-10	12941766	58156293	23038917	66	44904											
MUC16	94025	mdanderson.org	37	19	9065113	9065113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	9065113	T	C	9065113	3	2	710	1	0	0	0	0	1	0	0	0	9980	1725	60	3	21518	3	MUC16	19	9065113	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10		9065113	50063870	67	44905											
OR7A5	26659	mdanderson.org	37	19	14938184	14938184	+	Silent	SNP	A	A	G	rs200531878		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	14938184	A	G	14938184	2	3	710	1	0	0	0	0	0	0	0	1	11223	456	16	3		3	OR7A5	19	14938184	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	5873071	14938184	44190799	68	44906											
OR7A5	26659	mdanderson.org	37	19	14938248	14938248	+	Missense_Mutation	SNP	T	T	A	rs112284734	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	A	14938248	T	A	14938248	3	1	710	1	0	0	0	0	1	0	0	0	11223	1696	59	5	157	5	OR7A5	19	14938248	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	64	14938248	44190735	69	44907											
CPAMD8	27151	broad.mit.edu;ucsc.edu	37	19	17036078	17036078	+	Silent	SNP	A	A	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	17036078	A	G	17036078	2	3	710	1	0	0	0	0	0	0	0	1	3797	69	3	3		3	CPAMD8	19	17036078	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	2097830	17036078	42092905	70	44908											
CILP2	148113	broad.mit.edu	37	19	19649208	19649208	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	-	19649208	T	-	19649208	7	5	710	1	0	1	0	1	0	0	0	0	3432	1580	55	0	52	0	CILP2	19	19649208	Frame_Shift_Del	DEL	T	TCGA-KN-8435-01A-11D-2310-10	2613130	19649208	39479775	71	44909											
RELB	5971	broad.mit.edu;bcgsc.ca	37	19	45537516	45537516	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	45537516	G	C	45537516	3	2	710	1	0	0	0	0	1	0	0	0	13230	1174	41	4	1252	4	RELB	19	45537516	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	25888308	45537516	13591467	72	44910											
ZNF787	126208	broad.mit.edu	37	19	56599998	56599998	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	-	56599998	C	-	56599998	7	5	710	1	0	1	0	1	0	0	0	0	18171	755	27	0	612	0	ZNF787	19	56599998	Frame_Shift_Del	DEL	C	TCGA-KN-8435-01A-11D-2310-10	11062482	56599998	2528985	73	44911											
ZNF548	147694	broad.mit.edu	37	19	57911165	57911166	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	TT	57911166	-	TT	57911165	7	5	710	1	0	1	1	0	0	0	0	0	17992	797	28	0	1560	0	ZNF548	19	57911165	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	1311167	57911165	1217818	74	44912											
ZNF584	201514	mdanderson.org	37	19	58921398	58921398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	58921398	A	G	58921398	3	3	710	1	0	0	0	0	1	0	0	0	18028	275	10	3	115	3	ZNF584	19	58921398	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	1010233	58921398	207585	75	44913											
PCNA	5111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	5099481	5099481	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	5099481	C	G	5099481	3	3	710	1	0	0	0	0	1	0	0	0	11595	835	29	4	552	4	PCNA	20	5099481	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10		5099481	57926039	76	44914											
NECAB3	63941	broad.mit.edu;hgsc.bcm.edu	37	20	32258501	32258501	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	-	32258501	C	-	32258501	7	5	710	1	0	1	0	1	0	0	0	0	10313	726	26	0	978	0	NECAB3	20	32258501	Frame_Shift_Del	DEL	C	TCGA-KN-8435-01A-11D-2310-10	27159020	32258501	30767019	77	44915	628	2									
NECAB3	63941	bcgsc.ca	37	20	32258502	32258502	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	-	32258502	C	-	32258502	7	5	710	1	0	1	0	1	0	0	0	0	10313	623	22	0	979	0	NECAB3	20	32258502	Frame_Shift_Del	DEL	C	TCGA-KN-8435-01A-11D-2310-10	1	32258502	30767018	78	44916	628	2									
GGT7	2686	broad.mit.edu	37	20	33447370	33447371	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	33447371	-	G	33447370	7	5	710	1	0	1	1	0	0	0	0	0	6371	768	27	0	1134	0	GGT7	20	33447370	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	1188868	33447370	29578150	79	44917											
MFNG	4242	broad.mit.edu	37	22	37875491	37875491	+	Silent	SNP	C	C	T	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	T	37875491	C	T	37875491	2	4	710	1	0	0	0	0	0	0	0	1	9532	755	27	1		1	MFNG	22	37875491	Silent	SNP	C	TCGA-KN-8435-01A-11D-2310-10		37875491	13429075	80	44918											
SYNGR1	9145	broad.mit.edu	37	22	39777835	39777836	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	39777836	-	C	39777835	7	5	710	1	0	1	1	0	0	0	0	0	15460	1432	50	0	835	0	SYNGR1	22	39777835	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	1902344	39777835	11526731	81	44919											
BRD1	23774	broad.mit.edu;mdanderson.org	37	22	50216913	50216913	+	Silent	SNP	A	A	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	50216913	A	G	50216913	2	3	710	1	0	0	0	0	0	0	0	1	1503	214	8	3		3	BRD1	22	50216913	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	10439078	50216913	1087653	82	44920											
USP11	8237	mdanderson.org	37	X	47092432	47092432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	G	47092432	A	G	47092432	3	3	710	1	0	0	0	0	1	0	0	0	17054	246	9	3	121	3	USP11	23	47092432	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10		47092432	108178128	83	44921											
GPR112	139378	mdanderson.org	37	X	135431236	135431236	+	Missense_Mutation	SNP	T	T	C	rs5930932	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3	C	135431236	T	C	135431236	3	2	710	1	0	0	0	0	1	0	0	0	6636	1609	56	3	5381	3	GPR112	23	135431236	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	88338804	135431236	19839324	84	44922											
ENO1	2023	broad.mit.edu;mdanderson.org	37	1	8922983	8922983	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	8922983	G	A	8922983	4	1	711	1	0	0	0	0	0	1	0	0	5123	1124	39	1	114	1	ENO1	1	8922983	Nonsense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10		8922983	240327638	1	44923											
PRAMEF2	65122	mdanderson.org	37	1	12919552	12919552	+	Missense_Mutation	SNP	T	T	C	rs74056159	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	12919552	T	C	12919552	3	2	711	1	0	0	0	0	1	0	0	0	12445	1696	59	3	298	3	PRAMEF2	1	12919552	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	3996569	12919552	236331069	2	44924											
C1orf177	163747	bcgsc.ca	37	1	55279488	55279488	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	55279488	A	-	55279488	7	5	711	1	0	1	0	1	0	0	0	0	2019	28	1	0	790	0	C1orf177	1	55279488	Frame_Shift_Del	DEL	A	TCGA-KN-8436-01A-11D-2310-10	42359936	55279488	193971133	3	44925											
NBPF10	100132406	mdanderson.org	37	1	145368524	145368524	+	Missense_Mutation	SNP	A	A	T	rs111770733		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	145368524	A	T	145368524	3	4	711	1	0	0	0	0	1	0	0	0	10200	391	14	5	10836	5	NBPF10	1	145368524	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	90089036	145368524	103882097	4	44926											
DPM3	54344	broad.mit.edu	37	1	155112594	155112594	+	Silent	SNP	C	C	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	155112594	C	A	155112594	2	1	711	1	0	0	0	0	0	0	0	1	4728	697	25	4		4	DPM3	1	155112594	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	9744070	155112594	94138027	5	44927											
USH2A	7399	broad.mit.edu;bcgsc.ca	37	1	215953292	215953292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	215953292	C	T	215953292	3	4	711	1	0	0	0	0	1	0	0	0	17048	565	20	2	4848	2	USH2A	1	215953292	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	60840698	215953292	33297329	6	44928											
UGGT1	56886	broad.mit.edu;mdanderson.org	37	2	128945096	128945096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	128945096	A	G	128945096	3	3	711	1	0	0	0	0	1	0	0	0	16953	275	10	3	4708	3	UGGT1	2	128945096	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10		128945096	114254277	7	44929											
BBS5	129880	bcgsc.ca	37	2	170343593	170343593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	170343593	A	G	170343593	3	3	711	1	0	0	0	0	1	0	0	0	1340	43	2	3	167	3	BBS5	2	170343593	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	41398497	170343593	72855780	8	44930											
GLS	2744	broad.mit.edu	37	2	191765397	191765397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	191765397	C	T	191765397	3	4	711	1	0	0	0	0	1	0	0	0	6470	797	28	2	727	2	GLS	2	191765397	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	21421804	191765397	51433976	9	44931											
GAL3ST2	64090	broad.mit.edu	37	2	242743069	242743070	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	242743070	CA	-	242743069	7	5	711	1	0	1	0	1	0	0	0	0	6205	710	25	0	699	0	GAL3ST2	2	242743069	Frame_Shift_Del	DEL	CA	TCGA-KN-8436-01A-11D-2310-10	50977672	242743069	456304	10	44932											
IL5RA	3568	mdanderson.org	37	3	3144422	3144422	+	Silent	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	3144422	A	G	3144422	2	3	711	1	0	0	0	0	0	0	0	1	7707	330	12	3		3	IL5RA	3	3144422	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10		3144422	194878008	11	44933											
ITPR1	3708	mdanderson.org	37	3	4856848	4856848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	4856848	A	G	4856848	3	3	711	1	0	0	0	0	1	0	0	0	7927	295	11	3	8039	3	ITPR1	3	4856848	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	1712426	4856848	193165582	12	44934											
UBP1	7342	mdanderson.org	37	3	33454243	33454243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	33454243	T	C	33454243	3	2	711	1	0	0	0	0	1	0	0	0	16907	1493	52	3	1255	3	UBP1	3	33454243	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	28597395	33454243	164568187	13	44935											
CDCP1	64866	mdanderson.org	37	3	45136963	45136963	+	Silent	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	45136963	A	G	45136963	2	3	711	1	0	0	0	0	0	0	0	1	3095	41	2	3		3	CDCP1	3	45136963	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	11682720	45136963	152885467	14	44936											
CELSR3	1951	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	48681698	48681698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	48681698	G	A	48681698	3	1	711	1	0	0	0	0	1	0	0	0	3225	1116	39	1	1858	1	CELSR3	3	48681698	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	3544735	48681698	149340732	15	44937											
IFT80	57560	mdanderson.org	37	3	160095234	160095234	+	Silent	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	160095234	T	C	160095234	2	2	711	1	0	0	0	0	0	0	0	1	7571	1770	62	3		3	IFT80	3	160095234	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	111413536	160095234	37927196	16	44938											
NAALADL2	254827	mdanderson.org	37	3	175042057	175042057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	175042057	T	C	175042057	3	2	711	1	0	0	0	0	1	0	0	0	10137	1609	56	3	1051	3	NAALADL2	3	175042057	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	14946823	175042057	22980373	17	44939											
MFN1	55669	mdanderson.org	37	3	179085853	179085853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	179085853	A	G	179085853	3	3	711	1	0	0	0	0	1	0	0	0	9530	64	3	3	967	3	MFN1	3	179085853	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	4043796	179085853	18936577	18	44940											
ATP13A3	79572	broad.mit.edu;mdanderson.org	37	3	194158061	194158061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	194158061	C	T	194158061	3	4	711	1	0	0	0	0	1	0	0	0	1125	652	23	1	1762	1	ATP13A3	3	194158061	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	15072208	194158061	3864369	19	44941											
PAK2	5062	mdanderson.org	37	3	196530022	196530022	+	Silent	SNP	C	C	T	rs115224945	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	196530022	C	T	196530022	2	4	711	1	0	0	0	0	0	0	0	1	11408	796	28	2		2	PAK2	3	196530022	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	2371961	196530022	1492408	20	44942											
ZNF141	7700	mdanderson.org	37	4	367169	367169	+	Missense_Mutation	SNP	G	G	A	rs145966198		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	367169	G	A	367169	3	1	711	1	0	0	0	0	1	0	0	0	17742	943	33	2	957	2	ZNF141	4	367169	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10		367169	190787107	21	44943											
ZNF141	7700	mdanderson.org	37	4	367199	367199	+	Missense_Mutation	SNP	A	A	T	rs114931928	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	367199	A	T	367199	3	4	711	1	0	0	0	0	1	0	0	0	17742	43	2	5	987	5	ZNF141	4	367199	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	30	367199	190787077	22	44944	629	3									
ZNF141	7700	mdanderson.org	37	4	367201	367201	+	Silent	SNP	C	C	A	rs111394409		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	367201	C	A	367201	2	1	711	1	0	0	0	0	0	0	0	1	17742	610	22	4		4	ZNF141	4	367201	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	2	367201	190787075	23	44945	629	3									
ZNF141	7700	mdanderson.org	37	4	367206	367206	+	Missense_Mutation	SNP	C	C	G	rs113884485		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	367206	C	G	367206	3	3	711	1	0	0	0	0	1	0	0	0	17742	565	20	4	994	4	ZNF141	4	367206	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	5	367206	190787070	24	44946	629	3									
UGT2B4	7363	mdanderson.org	37	4	70360910	70360910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	70360910	A	G	70360910	3	3	711	1	0	0	0	0	1	0	0	0	16973	43	2	3	940	3	UGT2B4	4	70360910	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	69993704	70360910	120793366	25	44947											
C4orf40	401137	mdanderson.org	37	4	71021777	71021777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	71021777	T	C	71021777	3	2	711	1	0	0	0	0	1	0	0	0	2271	1725	60	3	64	3	C4orf40	4	71021777	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	660867	71021777	120132499	26	44948											
CDKL2	8999	mdanderson.org	37	4	76532490	76532490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	76532490	A	G	76532490	3	3	711	1	0	0	0	0	1	0	0	0	3156	275	10	3	1094	3	CDKL2	4	76532490	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	5510713	76532490	114621786	27	44949											
CNOT6L	246175	mdanderson.org	37	4	78641756	78641756	+	Silent	SNP	G	G	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	78641756	G	A	78641756	2	1	711	1	0	0	0	0	0	0	0	1	3625	1136	40	1		1	CNOT6L	4	78641756	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	2109266	78641756	112512520	28	44950											
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	88537027	C	A	88537027	3	1	711	1	0	0	0	0	1	0	0	0	4784	477	17	4	3227	4	DSPP	4	88537027	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	9895271	88537027	102617249	29	44951											
DSPP	1834	mdanderson.org	37	4	88537081	88537081	+	Silent	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	88537081	C	T	88537081	2	4	711	1	0	0	0	0	0	0	0	1	4784	477	17	2		2	DSPP	4	88537081	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	54	88537081	102617195	30	44952											
EIF4E	1977	mdanderson.org	37	4	99806181	99806181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	99806181	T	C	99806181	3	2	711	1	0	0	0	0	1	0	0	0	5030	1667	58	3	230	3	EIF4E	4	99806181	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	11269100	99806181	91348095	31	44953											
ENPEP	2028	mdanderson.org	37	4	111430851	111430851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	111430851	A	G	111430851	3	3	711	1	0	0	0	0	1	0	0	0	5130	43	2	3	1100	3	ENPEP	4	111430851	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	11624670	111430851	79723425	32	44954											
ABCE1	6059	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	146044440	146044440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	146044440	A	G	146044440	3	3	711	1	0	0	0	0	1	0	0	0	64	449	16	3	1502	3	ABCE1	4	146044440	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	34613589	146044440	45109836	33	44955											
FHDC1	85462	mdanderson.org	37	4	153897154	153897154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	153897154	A	G	153897154	3	3	711	1	0	0	0	0	1	0	0	0	5883	72	3	3	2753	3	FHDC1	4	153897154	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	7852714	153897154	37257122	34	44956											
TLR3	7098	mdanderson.org	37	4	187004362	187004362	+	Silent	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	187004362	T	C	187004362	2	2	711	1	0	0	0	0	0	0	0	1	15964	1606	56	3		3	TLR3	4	187004362	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	33107208	187004362	4149914	35	44957											
FAT1	2195	broad.mit.edu;hgsc.bcm.edu	37	4	187584589	187584589	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	187584589	G	-	187584589	7	5	711	1	0	1	0	1	0	0	0	0	5696	1280	45	0	10422	0	FAT1	4	187584589	Frame_Shift_Del	DEL	G	TCGA-KN-8436-01A-11D-2310-10	580227	187584589	3569687	36	44958	630	2									
FAT1	2195	bcgsc.ca	37	4	187584590	187584590	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	187584590	G	-	187584590	7	5	711	1	0	1	0	1	0	0	0	0	5696	333	12	0	10423	0	FAT1	4	187584590	Frame_Shift_Del	DEL	G	TCGA-KN-8436-01A-11D-2310-10	1	187584590	3569686	37	44959	630	2									
NKD2	85409	broad.mit.edu	37	5	1038447	1038461	+	In_Frame_Del	DEL	CACCACCACCACCAC	CACCACCACCACCAC	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CACCACCACCACCAC	CACCACCACCACCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	1038461	CACCACCACCACCAC	-	1038447	7	5	711	1	0	1	0	1	0	0	0	0	10449	710	25	0	1353	0	NKD2	5	1038447	In_Frame_Del	DEL	CACCACCACCACCAC	TCGA-KN-8436-01A-11D-2310-10		1038447	179876813	38	44960											
SLC6A19	340024	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	1214087	1214087	+	Missense_Mutation	SNP	C	C	T	rs148139045		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	1214087	C	T	1214087	3	4	711	1	0	0	0	0	1	0	0	0	14695	652	23	1	816	1	SLC6A19	5	1214087	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	175640	1214087	179701173	39	44961											
SLC1A3	6507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	36680556	36680556	+	Missense_Mutation	SNP	G	G	A	rs115702388	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	36680556	G	A	36680556	3	1	711	1	0	0	0	0	1	0	0	0	14446	1087	38	1	1197	1	SLC1A3	5	36680556	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	35466469	36680556	144234704	40	44962											
GCNT4	51301	mdanderson.org	37	5	74325354	74325354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	74325354	T	C	74325354	3	2	711	1	0	0	0	0	1	0	0	0	6310	1435	50	3	856	3	GCNT4	5	74325354	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	37644798	74325354	106589906	41	44963											
RAPGEF6	51735	bcgsc.ca	37	5	130788798	130788798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	130788798	A	G	130788798	3	3	711	1	0	0	0	0	1	0	0	0	13061	43	2	3	2151	3	RAPGEF6	5	130788798	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	56463444	130788798	50126462	42	44964											
FNIP1	96459	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131008278	131008278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	131008278	T	A	131008278	3	1	711	1	0	0	0	0	1	0	0	0	5982	1812	63	5	1661	5	FNIP1	5	131008278	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	219480	131008278	49906982	43	44965											
RNF145	153830	bcgsc.ca	37	5	158630640	158630640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	158630640	T	C	158630640	3	2	711	1	0	0	0	0	1	0	0	0	13460	1792	62	3	2045	3	RNF145	5	158630640	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	27622362	158630640	22284620	44	44966											
HLA-B	3106	mdanderson.org	37	6	31323116	31323116	+	Silent	SNP	C	C	T	rs1131446	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	31323116	C	T	31323116	2	4	711	1	0	0	0	0	0	0	0	1	7203	871	31	1		1	HLA-B	6	31323116	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10		31323116	139791951	45	44967											
HLA-DRB5	3127	mdanderson.org	37	6	32487169	32487169	+	Silent	SNP	C	C	T	rs34555743	bycluster	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	32487169	C	T	32487169	2	4	711	1	0	0	0	0	0	0	0	1	7216	871	31	1		1	HLA-DRB5	6	32487169	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	1164053	32487169	138627898	46	44968			1	134		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB5	3127	mdanderson.org	37	6	32487214	32487214	+	Silent	SNP	T	T	C	rs75673486		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	32487214	T	C	32487214	2	2	711	1	0	0	0	0	0	0	0	1	7216	1770	62	3		3	HLA-DRB5	6	32487214	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	45	32487214	138627853	47	44969			1	134		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB5	3127	mdanderson.org	37	6	32487265	32487265	+	Missense_Mutation	SNP	C	C	G	rs139485758	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	32487265	C	G	32487265	3	3	711	1	0	0	0	0	1	0	0	0	7216	912	32	4	282	4	HLA-DRB5	6	32487265	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	51	32487265	138627802	48	44970	631	2	1	134		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB5	3127	mdanderson.org	37	6	32487268	32487268	+	Silent	SNP	A	A	G	rs75732937	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	32487268	A	G	32487268	2	3	711	1	0	0	0	0	0	0	0	1	7216	242	9	3		3	HLA-DRB5	6	32487268	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	3	32487268	138627799	49	44971	631	2	1	134		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB5	3127	bcgsc.ca	37	6	32489853	32489853	+	Missense_Mutation	SNP	A	A	C	rs78961241	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	32489853	A	C	32489853	3	2	711	1	0	0	0	0	1	0	0	0	7216	69	3	5	621	5	HLA-DRB5	6	32489853	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	2585	32489853	138625214	50	44972			1	134		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB1	3123	bcgsc.ca	37	6	32551999	32551999	+	Missense_Mutation	SNP	T	T	C	rs17885129	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	32551999	T	C	32551999	3	2	711	1	0	0	0	0	1	0	0	0	7215	1667	58	3	563	3	HLA-DRB1	6	32551999	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	62146	32551999	138563068	51	44973											
HLA-DRB1	3123	mdanderson.org	37	6	32552123	32552123	+	Missense_Mutation	SNP	G	G	A	rs17879702	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	32552123	G	A	32552123	3	1	711	1	0	0	0	0	1	0	0	0	7215	1290	45	2	687	2	HLA-DRB1	6	32552123	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	124	32552123	138562944	52	44974											
HLA-DQA1	3117	bcgsc.ca	37	6	32609299	32609299	+	Missense_Mutation	SNP	A	A	C	rs1064944	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	32609299	A	C	32609299	3	2	711	1	0	0	0	0	1	0	0	0	7211	217	8	5	301	5	HLA-DQA1	6	32609299	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	57176	32609299	138505768	53	44975			2	135	119446	2	2	14	A		5.333112e-05
HLA-DQA1	3117	bcgsc.ca	37	6	32609312	32609312	+	Missense_Mutation	SNP	A	A	C	rs1129808	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	32609312	A	C	32609312	3	2	711	1	0	0	0	0	1	0	0	0	7211	391	14	5	314	5	HLA-DQA1	6	32609312	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	13	32609312	138505755	54	44976			2	135	119446	2	2	14	A		5.333112e-05
PEX6	5190	ucsc.edu	37	6	42933101	42933101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	42933101	A	G	42933101	3	3	711	1	0	0	0	0	1	0	0	0	11757	159	6	3	481	3	PEX6	6	42933101	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	10323789	42933101	128181966	55	44977											
CAPN11	11131	ucsc.edu	37	6	44140054	44140054	+	Missense_Mutation	SNP	T	T	C	rs111320370	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	44140054	T	C	44140054	3	2	711	1	0	0	0	0	1	0	0	0	2626	1580	55	3	443	3	CAPN11	6	44140054	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	1206953	44140054	126975013	56	44978											
CRISP1	167	mdanderson.org	37	6	49825056	49825056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	49825056	A	G	49825056	3	3	711	1	0	0	0	0	1	0	0	0	3881	275	10	3	719	3	CRISP1	6	49825056	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	5685002	49825056	121290011	57	44979											
TAX1BP1	8887	mdanderson.org	37	7	27839640	27839640	+	Silent	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	27839640	A	G	27839640	2	3	711	1	0	0	0	0	0	0	0	1	15606	98	4	3		3	TAX1BP1	7	27839640	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10		27839640	131299023	58	44980											
PHTF2	57157	mdanderson.org	37	7	77569448	77569448	+	Silent	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	77569448	A	G	77569448	2	3	711	1	0	0	0	0	0	0	0	1	11870	175	7	3		3	PHTF2	7	77569448	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	49729808	77569448	81569215	59	44981											
PCLO	27445	broad.mit.edu;mdanderson.org	37	7	82579610	82579610	+	Missense_Mutation	SNP	C	C	T	rs202185916	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	82579610	C	T	82579610	3	4	711	1	0	0	0	0	1	0	0	0	11590	913	32	2	5231	2	PCLO	7	82579610	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	5010162	82579610	76559053	60	44982											
ADAM22	53616	mdanderson.org	37	7	87607668	87607668	+	Silent	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	87607668	A	G	87607668	2	3	711	1	0	0	0	0	0	0	0	1	244	69	3	3		3	ADAM22	7	87607668	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	5028058	87607668	71530995	61	44983											
DOCK4	9732	mdanderson.org;bcgsc.ca	37	7	111580241	111580241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	111580241	A	G	111580241	3	3	711	1	0	0	0	0	1	0	0	0	4691	72	3	3	5167	3	DOCK4	7	111580241	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	23972573	111580241	47558422	62	44984											
FLNC	2318	bcgsc.ca	37	7	128477551	128477551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	128477551	C	T	128477551	3	4	711	1	0	0	0	0	1	0	0	0	5942	623	22	2	813	2	FLNC	7	128477551	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	16897310	128477551	30661112	63	44985											
ARHGEF5	7984	mdanderson.org	37	7	144070326	144070326	+	Silent	SNP	A	A	G	rs201695853		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	144070326	A	G	144070326	2	3	711	1	0	0	0	0	0	0	0	1	909	262	10	3		3	ARHGEF5	7	144070326	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	15592775	144070326	15068337	64	44986											
DCAF13	25879	mdanderson.org	37	8	104442840	104442840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	104442840	A	G	104442840	3	3	711	1	0	0	0	0	1	0	0	0	4268	289	10	3	1103	3	DCAF13	8	104442840	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10		104442840	41921182	65	44987											
GRIN3A	116443	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	104432589	104432589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	104432589	C	A	104432589	3	1	711	1	0	0	0	0	1	0	0	0	6790	507	18	4	1270	4	GRIN3A	9	104432589	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10		104432589	36780842	66	44988											
EPB41L4B	54566	mdanderson.org	37	9	112015799	112015799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	112015799	A	G	112015799	3	3	711	1	0	0	0	0	1	0	0	0	5158	304	11	3	1713	3	EPB41L4B	9	112015799	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	7583210	112015799	29197632	67	44989											
C9orf152	401546	mdanderson.org	37	9	112963527	112963527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	112963527	T	C	112963527	3	2	711	1	0	0	0	0	1	0	0	0	2465	1521	53	3	302	3	C9orf152	9	112963527	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	947728	112963527	28249904	68	44990											
DNM1	1759	bcgsc.ca	37	9	130984588	130984588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	130984588	A	G	130984588	3	3	711	1	0	0	0	0	1	0	0	0	4672	275	10	3	988	3	DNM1	9	130984588	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	18021061	130984588	10228843	69	44991											
KCNT1	57582	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	138641963	138641963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	138641963	G	A	138641963	3	1	711	1	0	0	0	0	1	0	0	0	8098	1145	40	1	284	1	KCNT1	9	138641963	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	7657375	138641963	2571468	70	44992											
TUBB8	347688	mdanderson.org	37	10	94011	94011	+	Silent	SNP	G	G	T	rs71485057		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	94011	G	T	94011	2	4	711	1	0	0	0	0	0	0	0	1	16773	1103	39	4		4	TUBB8	10	94011	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10		94011	135440736	71	44993											
HNRNPF	3185	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	43882268	43882268	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	43882268	T	A	43882268	3	1	711	1	0	0	0	0	1	0	0	0	7272	1432	50	5	186	5	HNRNPF	10	43882268	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	43788257	43882268	91652479	72	44994											
ANK3	288	mdanderson.org	37	10	61815749	61815749	+	Silent	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	61815749	T	C	61815749	2	2	711	1	0	0	0	0	0	0	0	1	622	1606	56	3		3	ANK3	10	61815749	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	17933481	61815749	73718998	73	44995											
NDST2	8509	broad.mit.edu	37	10	75563396	75563397	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	75563397	-	G	75563396	7	5	711	1	0	1	1	0	0	0	0	0	10263	188	7	0	593	0	NDST2	10	75563396	Frame_Shift_Ins	INS	-	TCGA-KN-8436-01A-11D-2310-10	13747647	75563396	59971351	74	44996											
VTI1A	143187	mdanderson.org	37	10	114224340	114224340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	114224340	C	T	114224340	3	4	711	1	0	0	0	0	1	0	0	0	17247	594	21	2	198	2	VTI1A	10	114224340	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	38660944	114224340	21310407	75	44997											
MUC6	4588	mdanderson.org	37	11	1016738	1016738	+	Silent	SNP	A	A	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	1016738	A	T	1016738	2	4	711	1	0	0	0	0	0	0	0	1	9987	291	11	5		5	MUC6	11	1016738	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10		1016738	133989778	76	44998			3	136		3	3	730	N	G_A	4.457194e-06
MUC6	4588	bcgsc.ca	37	11	1016809	1016809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	1016809	G	T	1016809	3	4	711	1	0	0	0	0	1	0	0	0	9987	1232	43	4	1339	4	MUC6	11	1016809	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	71	1016809	133989707	77	44999			3	136		3	3	730	N	G_A	4.457194e-06
MUC6	4588	mdanderson.org	37	11	1017467	1017467	+	Silent	SNP	G	G	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	1017467	G	T	1017467	2	4	711	1	0	0	0	0	0	0	0	1	9987	1335	47	4		4	MUC6	11	1017467	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	658	1017467	133989049	78	45000			3	136		3	3	730	N	G_A	4.457194e-06
CTSF	8722	broad.mit.edu;mdanderson.org	37	11	66335107	66335107	+	Silent	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	66335107	C	T	66335107	2	4	711	1	0	0	0	0	0	0	0	1	4036	796	28	2		2	CTSF	11	66335107	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	65317640	66335107	68671409	79	45001											
RAD52	5893	mdanderson.org	37	12	1023070	1023070	+	Silent	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	1023070	T	C	1023070	2	2	711	1	0	0	0	0	0	0	0	1	13004	1722	60	3		3	RAD52	12	1023070	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10		1023070	132828825	80	45002											
TAS2R43	259289	mdanderson.org	37	12	11244591	11244591	+	Missense_Mutation	SNP	C	C	A	rs73064968	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	11244591	C	A	11244591	3	1	711	1	0	0	0	0	1	0	0	0	15593	565	20	4	695	4	TAS2R43	12	11244591	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	10221521	11244591	122607304	81	45003											
GPRC5A	9052	mdanderson.org	37	12	13061805	13061805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	13061805	A	G	13061805	3	3	711	1	0	0	0	0	1	0	0	0	6731	296	11	3	624	3	GPRC5A	12	13061805	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	1817214	13061805	120790090	82	45004											
RECQL	5965	broad.mit.edu	37	12	21623272	21623272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	21623272	C	-	21623272	7	5	711	1	0	1	0	1	0	0	0	0	13214	523	19	0	147	0	RECQL	12	21623272	Frame_Shift_Del	DEL	C	TCGA-KN-8436-01A-11D-2310-10	8561467	21623272	112228623	83	45005											
DENND5B	160518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	31540710	31540710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	31540710	G	A	31540710	3	1	711	1	0	0	0	0	1	0	0	0	4439	971	34	2	176	2	DENND5B	12	31540710	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	9917438	31540710	102311185	84	45006											
C12orf35	55196	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	12	32136955	32136955	+	Silent	SNP	T	T	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	32136955	T	A	32136955	2	1	711	1	0	0	0	0	0	0	0	1	1684	1538	54	5		5	C12orf35	12	32136955	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	596245	32136955	101714940	85	45007											
KRT6C	286887	mdanderson.org	37	12	52867105	52867105	+	Silent	SNP	G	G	A	rs71455206	bycluster;byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	52867105	G	A	52867105	2	1	711	1	0	0	0	0	0	0	0	1	8489	1103	39	1		1	KRT6C	12	52867105	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	20730150	52867105	80984790	86	45008											
KRT6A	3853	mdanderson.org	37	12	52886556	52886556	+	Silent	SNP	G	G	A	rs1707768		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	52886556	G	A	52886556	2	1	711	1	0	0	0	0	0	0	0	1	8487	1103	39	1		1	KRT6A	12	52886556	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	19451	52886556	80965339	87	45009											
KRT76	51350	mdanderson.org	37	12	53165930	53165930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	53165930	T	C	53165930	3	2	711	1	0	0	0	0	1	0	0	0	8496	1551	54	3	851	3	KRT76	12	53165930	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	279374	53165930	80685965	88	45010											
ACSS3	79611	broad.mit.edu;mdanderson.org	37	12	81503375	81503375	+	Silent	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	81503375	C	T	81503375	2	4	711	1	0	0	0	0	0	0	0	1	190	639	23	1		1	ACSS3	12	81503375	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	28337445	81503375	52348520	89	45011											
HVCN1	84329	broad.mit.edu	37	12	111099110	111099112	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	111099112	CTC	-	111099110	7	5	711	1	0	1	0	1	0	0	0	0	7469	796	28	0	676	0	HVCN1	12	111099110	In_Frame_Del	DEL	CTC	TCGA-KN-8436-01A-11D-2310-10	29595735	111099110	22752785	90	45012											
CCDC64	92558	mdanderson.org	37	12	120530940	120530940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	120530940	T	C	120530940	3	2	711	1	0	0	0	0	1	0	0	0	2837	1551	54	3	1731	3	CCDC64	12	120530940	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	9431830	120530940	13320955	91	45013											
ZMYM2	7750	mdanderson.org	37	13	20579236	20579236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	20579236	A	G	20579236	3	3	711	1	0	0	0	0	1	0	0	0	17712	43	2	3	1166	3	ZMYM2	13	20579236	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10		20579236	94590642	92	45014											
PABPC3	5042	mdanderson.org	37	13	25671925	25671925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	25671925	T	C	25671925	3	2	711	1	0	0	0	0	1	0	0	0	11372	1609	56	3	1591	3	PABPC3	13	25671925	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	5092689	25671925	89497953	93	45015											
ALG11	440138	mdanderson.org;bcgsc.ca	37	13	52586578	52586578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	52586578	G	T	52586578	3	4	711	1	0	0	0	0	1	0	0	0	513	1270	44	4	26	4	ALG11	13	52586578	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	26914653	52586578	62583300	94	45016											
TGM1	7051	mdanderson.org	37	14	24730943	24730943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	24730943	T	C	24730943	3	2	711	1	0	0	0	0	1	0	0	0	15841	1667	58	3	2039	3	TGM1	14	24730943	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		24730943	82618597	95	45017											
NIN	51199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	14	51196406	51196406	+	Silent	SNP	C	C	T	rs145555295	bycluster;by1000genomes	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	51196406	C	T	51196406	2	4	711	1	0	0	0	0	0	0	0	1	10424	523	19	1		1	NIN	14	51196406	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	26465463	51196406	56153134	96	45018											
TECPR2	9895	mdanderson.org	37	14	102881076	102881076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	102881076	T	C	102881076	3	2	711	1	0	0	0	0	1	0	0	0	15756	1551	54	3	598	3	TECPR2	14	102881076	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	51684670	102881076	4468464	97	45019											
MYO5C	55930	mdanderson.org	37	15	52510728	52510728	+	Silent	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	52510728	A	G	52510728	2	3	711	1	0	0	0	0	0	0	0	1	10087	59	3	3		3	MYO5C	15	52510728	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10		52510728	50020664	98	45020											
UNC13C	440279	broad.mit.edu	37	15	54527276	54527276	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	54527276	A	-	54527276	7	5	711	1	0	1	0	1	0	0	0	0	16998	243	9	0	3134	0	UNC13C	15	54527276	Frame_Shift_Del	DEL	A	TCGA-KN-8436-01A-11D-2310-10	2016548	54527276	48004116	99	45021											
AQP9	366	mdanderson.org	37	15	58458901	58458901	+	Silent	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	58458901	T	C	58458901	2	2	711	1	0	0	0	0	0	0	0	1	833	1509	53	3		3	AQP9	15	58458901	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	3931625	58458901	44072491	100	45022											
ERCC4	2072	broad.mit.edu	37	16	14041910	14041911	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	14041911	-	A	14041910	7	5	711	1	0	1	1	0	0	0	0	0	5217	709	25	0	2499	0	ERCC4	16	14041910	Frame_Shift_Ins	INS	-	TCGA-KN-8436-01A-11D-2310-10		14041910	76312843	101	45023											
ABCC6	368	broad.mit.edu	37	16	16278826	16278827	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	16278827	-	G	16278826	7	5	711	1	0	1	1	0	0	0	0	0	57	188	7	0	2646	0	ABCC6	16	16278826	Frame_Shift_Ins	INS	-	TCGA-KN-8436-01A-11D-2310-10	2236916	16278826	74075927	102	45024											
HSD11B2	3291	broad.mit.edu;mdanderson.org;bcgsc.ca	37	16	67470735	67470735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	67470735	C	A	67470735	3	1	711	1	0	0	0	0	1	0	0	0	7384	825	29	4	1065	4	HSD11B2	16	67470735	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	51191909	67470735	22884018	103	45025											
TP53	7157	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	7574015	7574015	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	7574015	A	T	7574015	3	4	711	1	0	0	0	0	1	0	0	0	16393	72	3	5	177	5	TP53	17	7574015	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10		7574015	73621195	104	45026											
DHX58	79132	bcgsc.ca	37	17	40263795	40263795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	40263795	T	C	40263795	3	2	711	1	0	0	0	0	1	0	0	0	4516	1609	56	3	1968	3	DHX58	17	40263795	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	32689780	40263795	40931415	105	45027											
SMCHD1	23347	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	2703826	2703826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	2703826	C	A	2703826	3	1	711	1	0	0	0	0	1	0	0	0	14801	623	22	4	1834	4	SMCHD1	18	2703826	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10		2703826	75373422	106	45028											
GNG7	2788	broad.mit.edu	37	19	2515020	2515020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	2515020	T	A	2515020	3	1	711	1	0	0	0	0	1	0	0	0	6538	1732	60	5	3	5	GNG7	19	2515020	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		2515020	56613963	107	45029											
PIP5K1C	23396	mdanderson.org	37	19	3656451	3656451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	3656451	C	T	3656451	3	4	711	1	0	0	0	0	1	0	0	0	11948	710	25	2	1485	2	PIP5K1C	19	3656451	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	1141431	3656451	55472532	108	45030											
FUT3	2525	mdanderson.org	37	19	5843822	5843822	+	Silent	SNP	T	T	C	rs199931170	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	5843822	T	C	5843822	2	2	711	1	0	0	0	0	0	0	0	1	6112	1722	60	3		3	FUT3	19	5843822	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	2187371	5843822	53285161	109	45031											
MUC16	94025	broad.mit.edu	37	19	9054266	9054267	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	9054267	-	G	9054266	7	5	711	1	0	1	1	0	0	0	0	0	9980	291	11	0	12491	0	MUC16	19	9054266	Frame_Shift_Ins	INS	-	TCGA-KN-8436-01A-11D-2310-10	3210444	9054266	50074717	110	45032											
FBXW9	84261	ucsc.edu	37	19	12807079	12807079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	12807079	A	G	12807079	3	3	711	1	0	0	0	0	1	0	0	0	5778	159	6	3	1099	3	FBXW9	19	12807079	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	3752813	12807079	46321904	111	45033											
RHPN2	85415	mdanderson.org	37	19	33493830	33493830	+	Silent	SNP	G	G	A	rs74453945	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	33493830	G	A	33493830	2	1	711	1	0	0	0	0	0	0	0	1	13364	1045	37	1		1	RHPN2	19	33493830	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	20686751	33493830	25635153	112	45034											
TMEM147	10430	ucsc.edu;bcgsc.ca	37	19	36036858	36036858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	36036858	A	G	36036858	3	3	711	1	0	0	0	0	1	0	0	0	16073	86	3	3	152	3	TMEM147	19	36036858	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	2543028	36036858	23092125	113	45035											
HRC	3270	mdanderson.org	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	49657916	T	C	49657916	2	2	711	1	0	0	0	0	0	0	0	1	7359	1606	56	3		3	HRC	19	49657916	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	13621058	49657916	9471067	114	45036	632	2									
HRC	3270	mdanderson.org	37	19	49657920	49657920	+	Missense_Mutation	SNP	C	C	T	rs200730671		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	49657920	C	T	49657920	3	4	711	1	0	0	0	0	1	0	0	0	7359	855	30	2	1548	2	HRC	19	49657920	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	4	49657920	9471063	115	45037	632	2									
PTPRH	5794	mdanderson.org	37	19	55716805	55716805	+	Missense_Mutation	SNP	G	G	A	rs200319382		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	55716805	G	A	55716805	3	1	711	1	0	0	0	0	1	0	0	0	12816	1377	48	2	2907	2	PTPRH	19	55716805	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	6058885	55716805	3412178	116	45038											
PEG3	5178	ucsc.edu;mdanderson.org	37	19	57328023	57328023	+	Missense_Mutation	SNP	T	T	C	rs79960989	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	57328023	T	C	57328023	3	2	711	1	0	0	0	0	1	0	0	0	11727	1464	51	3	2983	3	PEG3	19	57328023	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	1611218	57328023	1800960	117	45039											
SIRPB1	10326	mdanderson.org	37	20	1585454	1585454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	1585454	C	T	1585454	3	4	711	1	0	0	0	0	1	0	0	0	14346	507	18	2	1660	2	SIRPB1	20	1585454	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10		1585454	61440066	118	45040											
JAG1	182	mdanderson.org	37	20	10621581	10621581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	10621581	A	G	10621581	3	3	711	1	0	0	0	0	1	0	0	0	7941	289	10	3	615	3	JAG1	20	10621581	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	9036127	10621581	52403939	119	45041											
BAGE	574	hgsc.bcm.edu;mdanderson.org	37	21	11097574	11097574	+	Missense_Mutation	SNP	T	T	A	rs55673353	bycluster;byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	11097574	T	A	11097574	3	1	711	1	0	0	0	0	1	0	0	0	1291	1550	54	5	34	5	BAGE	21	11097574	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		11097574	37032321	120	45042											
ERG	2078	mdanderson.org	37	21	39817391	39817391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	39817391	A	G	39817391	3	3	711	1	0	0	0	0	1	0	0	0	5224	275	10	3	1303	3	ERG	21	39817391	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	28719817	39817391	8312504	121	45043											
KRTAP10-10	353333	ucsc.edu	37	21	46057634	46057634	+	Silent	SNP	T	T	C	rs61029972	bycluster;byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	46057634	T	C	46057634	2	2	711	1	0	0	0	0	0	0	0	1	8513	1702	59	3		3	KRTAP10-10	21	46057634	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	6240243	46057634	2072261	122	45044											
AIFM3	150209	ucsc.edu	37	22	21334338	21334338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	21334338	T	C	21334338	3	2	711	1	0	0	0	0	1	0	0	0	428	1464	51	3	1770	3	AIFM3	22	21334338	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		21334338	29970228	123	45045											
FAM118A	55007	mdanderson.org	37	22	45723920	45723920	+	Silent	SNP	C	C	T	rs111386114		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	45723920	C	T	45723920	2	4	711	1	0	0	0	0	0	0	0	1	5415	610	22	2		2	FAM118A	22	45723920	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	24389582	45723920	5580646	124	45046											
FAM9C	171484	mdanderson.org	37	X	13058890	13058890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	13058890	T	C	13058890	3	2	711	1	0	0	0	0	1	0	0	0	5668	1725	60	3	196	3	FAM9C	23	13058890	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		13058890	142211670	125	45047											
SSX7	280658	mdanderson.org	37	X	52681937	52681937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	52681937	T	C	52681937	3	2	711	1	0	0	0	0	1	0	0	0	15221	1551	54	3	419	3	SSX7	23	52681937	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	39623047	52681937	102588623	126	45048											
RGAG4	340526	mdanderson.org	37	X	71350156	71350156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	C	71350156	T	C	71350156	3	2	711	1	0	0	0	0	1	0	0	0	13288	1725	60	3	478	3	RGAG4	23	71350156	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	18668219	71350156	83920404	127	45049											
LPAR4	2846	mdanderson.org	37	X	78010586	78010586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	G	78010586	A	G	78010586	3	3	711	1	0	0	0	0	1	0	0	0	8914	275	10	3	222	3	LPAR4	23	78010586	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	6660430	78010586	77259974	128	45050											
GPR50	9248	hgsc.bcm.edu	37	X	150349560	150349560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	T	150349560	C	T	150349560	3	4	711	1	0	0	0	0	1	0	0	0	6704	507	18	2	1511	2	GPR50	23	150349560	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	72338974	150349560	4921000	129	45051											
GABRE	2564	mdanderson.org	37	X	151123190	151123190	+	Missense_Mutation	SNP	C	C	A	rs1061417	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	151123190	C	A	151123190	3	1	711	1	0	0	0	0	1	0	0	0	6177	478	17	4	20	4	GABRE	23	151123190	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	773630	151123190	4147370	130	45052											
ABCD1	215	mdanderson.org	37	X	153008788	153008788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	A	153008788	G	A	153008788	3	1	711	1	0	0	0	0	1	0	0	0	60	1116	39	1	2013	1	ABCD1	23	153008788	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	1885598	153008788	2261772	131	45053											
ATP6AP1	537	broad.mit.edu;hgsc.bcm.edu	37	X	153662709	153662745	+	Frame_Shift_Del	DEL	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	153662745	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	-	153662709	7	5	711	1	0	1	0	1	0	0	0	0	1165	506	18	0	866	0	ATP6AP1	23	153662709	Frame_Shift_Del	DEL	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	TCGA-KN-8436-01A-11D-2310-10	653921	153662709	1607851	132	45054	633	2									
ATP6AP1	537	bcgsc.ca	37	X	153662710	153662746	+	Frame_Shift_Del	DEL	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	-	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28	-	153662746	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	-	153662710	7	5	711	1	0	1	0	1	0	0	0	0	1165	595	21	0	867	0	ATP6AP1	23	153662710	Frame_Shift_Del	DEL	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	TCGA-KN-8436-01A-11D-2310-10	1	153662710	1607850	133	45055	633	2									
MTOR	2475	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	11174395	11174395	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	11174395	A	C	11174395	3	2	712	1	0	0	0	0	1	0	0	0	9961	188	7	5	393	5	MTOR	1	11174395	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10		11174395	238076226	1	45056											
PRDM2	7799	broad.mit.edu	37	1	14107869	14107869	+	Silent	SNP	T	T	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	14107869	T	C	14107869	2	2	712	1	0	0	0	0	0	0	0	1	12468	1731	60	3		3	PRDM2	1	14107869	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10	2933474	14107869	235142752	2	45057											
TAS1R2	80834	broad.mit.edu	37	1	19166380	19166380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	19166380	A	G	19166380	3	3	712	1	0	0	0	0	1	0	0	0	15575	72	3	3	290	3	TAS1R2	1	19166380	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10	5058511	19166380	230084241	3	45058											
LCK	3932	broad.mit.edu	37	1	32741193	32741193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	A	32741193	G	A	32741193	3	1	712	1	0	0	0	0	1	0	0	0	8683	1087	38	1	419	1	LCK	1	32741193	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	13574813	32741193	216509428	4	45059											
NOTCH2	4853	broad.mit.edu	37	1	120539779	120539780	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	120539780	-	G	120539779	7	5	712	1	0	1	1	0	0	0	0	0	10555	188	7	0	6947	0	NOTCH2	1	120539779	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10	87798586	120539779	128710842	5	45060											
INTS3	65123	ucsc.edu	37	1	153735835	153735835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	153735835	G	T	153735835	3	4	712	1	0	0	0	0	1	0	0	0	7786	1232	43	4	1825	4	INTS3	1	153735835	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	33196056	153735835	95514786	6	45061											
CCDC74A	90557	broad.mit.edu	37	2	132290264	132290265	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	132290265	-	C	132290264	7	5	712	1	0	1	1	0	0	0	0	0	2849	1306	46	0	804	0	CCDC74A	2	132290264	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10		132290264	110909109	7	45062											
DNAJC13	23317	ucsc.edu	37	3	132193881	132193881	+	Silent	SNP	A	A	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	132193881	A	G	132193881	2	3	712	1	0	0	0	0	0	0	0	1	4634	301	11	3		3	DNAJC13	3	132193881	Silent	SNP	A	TCGA-KN-8437-01A-11D-2310-10		132193881	65828549	8	45063											
CLRN1	7401	broad.mit.edu	37	3	150659389	150659389	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	A	150659389	T	A	150659389	3	1	712	1	0	0	0	0	1	0	0	0	3559	1638	57	5	318	5	CLRN1	3	150659389	Missense_Mutation	SNP	T	TCGA-KN-8437-01A-11D-2310-10	18465508	150659389	47363041	9	45064											
MUC4	4585	broad.mit.edu	37	3	195505843	195505843	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	195505843	G	C	195505843	3	2	712	1	0	0	0	0	1	0	0	0	9985	1377	48	4		4	MUC4	3	195505843	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	44846454	195505843	2516587	10	45065											
MUC4	4585	mdanderson.org	37	3	195509029	195509029	+	Missense_Mutation	SNP	C	C	T	rs34770050	alternate_allele	TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	195509029	C	T	195509029	3	4	712	1	0	0	0	0	1	0	0	0	9985	797	28	2		2	MUC4	3	195509029	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10	3186	195509029	2513401	11	45066											
G3BP2	9908	ucsc.edu	37	4	76573848	76573848	+	Silent	SNP	A	A	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	76573848	A	G	76573848	2	3	712	1	0	0	0	0	0	0	0	1	6149	30	2	3		3	G3BP2	4	76573848	Silent	SNP	A	TCGA-KN-8437-01A-11D-2310-10		76573848	114580428	12	45067											
C5orf42	65250	ucsc.edu;mdanderson.org	37	5	37221454	37221454	+	Silent	SNP	T	T	A	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	A	37221454	T	A	37221454	2	1	712	1	0	0	0	0	0	0	0	1	2303	1625	57	5		5	C5orf42	5	37221454	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10		37221454	143693806	13	45068											
PAIP2	51247	ucsc.edu	37	5	138700258	138700258	+	Silent	SNP	A	A	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	138700258	A	G	138700258	2	3	712	1	0	0	0	0	0	0	0	1	11404	69	3	3		3	PAIP2	5	138700258	Silent	SNP	A	TCGA-KN-8437-01A-11D-2310-10	101478804	138700258	42215002	14	45069											
PRSS35	167681	broad.mit.edu	37	6	84233685	84233685	+	Silent	SNP	G	G	A	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	A	84233685	G	A	84233685	2	1	712	1	0	0	0	0	0	0	0	1	12634	991	35	2		2	PRSS35	6	84233685	Silent	SNP	G	TCGA-KN-8437-01A-11D-2310-10		84233685	86881382	15	45070											
IGF2R	3482	broad.mit.edu	37	6	160485473	160485473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	160485473	A	T	160485473	3	4	712	1	0	0	0	0	1	0	0	0	7583	359	13	5	4037	5	IGF2R	6	160485473	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10	76251788	160485473	10629594	16	45071											
SPDYE6	729597	broad.mit.edu	37	7	101988975	101988976	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	-	101988976	TG	-	101988975	7	5	712	1	0	1	0	1	0	0	0	0	15045	1579	55	0	318	0	SPDYE6	7	101988975	Frame_Shift_Del	DEL	TG	TCGA-KN-8437-01A-11D-2310-10		101988975	57149688	17	45072											
CCNE2	9134	hgsc.bcm.edu	37	8	95897417	95897417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	95897417	C	T	95897417	3	4	712	1	0	0	0	0	1	0	0	0	2923	864	30	2	521	2	CCNE2	8	95897417	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10		95897417	50466605	18	45073											
CBWD6	644019	broad.mit.edu	37	9	69256826	69256827	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	69256827	-	C	69256826	7	5	712	1	0	1	1	0	0	0	0	0	2718	1783	62	0	934	0	CBWD6	9	69256826	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10		69256826	71956605	19	45074											
KIAA1274	27143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	72293731	72293731	+	Silent	SNP	C	C	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	72293731	C	G	72293731	2	3	712	1	0	0	0	0	0	0	0	1	8227	871	31	4		4	KIAA1274	10	72293731	Silent	SNP	C	TCGA-KN-8437-01A-11D-2310-10		72293731	63241016	20	45075											
DDIT4	54541	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	74034518	74034518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	A	74034518	C	A	74034518	3	1	712	1	0	0	0	0	1	0	0	0	4333	478	17	4	277	4	DDIT4	10	74034518	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10	1740787	74034518	61500229	21	45076											
OTUB1	55611	bcgsc.ca	37	11	63756163	63756163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	63756163	A	G	63756163	3	3	712	1	0	0	0	0	1	0	0	0	11318	304	11	3	168	3	OTUB1	11	63756163	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10		63756163	71250353	22	45077											
SHANK2	22941	broad.mit.edu	37	11	70824380	70824381	+	In_Frame_Ins	INS	-	-	TTT	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	TTT	70824381	-	TTT	70824380	7	5	712	1	0	1	1	0	0	0	0	0	14278	797	28	0	5085	0	SHANK2	11	70824380	In_Frame_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10	7068217	70824380	64182136	23	45078											
ROBO3	64221	broad.mit.edu	37	11	124739923	124739924	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	124739924	-	G	124739923	7	5	712	1	0	1	1	0	0	0	0	0	13528	768	27	0	739	0	ROBO3	11	124739923	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10	53915543	124739923	10266593	24	45079											
DPPA3	359787	broad.mit.edu	37	12	7869647	7869648	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	A	7869648	-	A	7869647	7	5	712	1	0	1	1	0	0	0	0	0	4737	827	29	0	468	0	DPPA3	12	7869647	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10		7869647	125982248	25	45080											
RPAP3	79657	broad.mit.edu	37	12	48095315	48095315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	-	48095315	T	-	48095315	7	5	712	1	0	1	0	1	0	0	0	0	13556	1725	60	0	1831	0	RPAP3	12	48095315	Frame_Shift_Del	DEL	T	TCGA-KN-8437-01A-11D-2310-10	40225668	48095315	85756580	26	45081											
AHNAK2	113146	mdanderson.org	37	14	105410382	105410382	+	Silent	SNP	T	T	C	rs201817721		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	105410382	T	C	105410382	2	2	712	1	0	0	0	0	0	0	0	1	415	1490	52	3		3	AHNAK2	14	105410382	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10		105410382	1939158	27	45082											
LCTL	197021	ucsc.edu	37	15	66840924	66840924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	66840924	C	T	66840924	3	4	712	1	0	0	0	0	1	0	0	0	8701	710	25	2	99	2	LCTL	15	66840924	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10		66840924	35690468	28	45083											
CLUAP1	23059	hgsc.bcm.edu	37	16	3586166	3586166	+	Silent	SNP	C	C	T	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	3586166	C	T	3586166	2	4	712	1	0	0	0	0	0	0	0	1	3571	535	19	1		1	CLUAP1	16	3586166	Silent	SNP	C	TCGA-KN-8437-01A-11D-2310-10		3586166	86768587	29	45084											
OTOA	146183	broad.mit.edu	37	16	21698797	21698797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	A	21698797	G	A	21698797	3	1	712	1	0	0	0	0	1	0	0	0	11309	1145	40	1	523	1	OTOA	16	21698797	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	18112631	21698797	68655956	30	45085											
ZNF668	79759	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	31073370	31073370	+	Silent	SNP	C	C	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	31073370	C	G	31073370	2	3	712	1	0	0	0	0	0	0	0	1	18087	871	31	4		4	ZNF668	16	31073370	Silent	SNP	C	TCGA-KN-8437-01A-11D-2310-10	9374573	31073370	59281383	31	45086											
SLC2A4	6517	broad.mit.edu	37	17	7186903	7186903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	7186903	T	C	7186903	3	2	712	1	0	0	0	0	1	0	0	0	14559	1609	56	3	272	3	SLC2A4	17	7186903	Missense_Mutation	SNP	T	TCGA-KN-8437-01A-11D-2310-10		7186903	74008307	32	45087											
STXBP4	252983	broad.mit.edu	37	17	53077156	53077156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	53077156	A	G	53077156	3	3	712	1	0	0	0	0	1	0	0	0	15367	275	10	3	465	3	STXBP4	17	53077156	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10	45890253	53077156	28118054	33	45088											
MFSD11	79157	hgsc.bcm.edu	37	17	74765928	74765928	+	Silent	SNP	T	T	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	74765928	T	C	74765928	2	2	712	1	0	0	0	0	0	0	0	1	9536	1829	64	3		3	MFSD11	17	74765928	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10	21688772	74765928	6429282	34	45089											
EIF4A3	9775	bcgsc.ca	37	17	78109803	78109803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	78109803	C	T	78109803	3	4	712	1	0	0	0	0	1	0	0	0	5028	666	23	1	24	1	EIF4A3	17	78109803	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10	3343875	78109803	3085407	35	45090											
ZNF521	25925	ucsc.edu;mdanderson.org	37	18	22930910	22930911	+	Splice_Site	DNP	TC	TC	AA	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	AA	22930911	TC	AA	22930910	5	1	712	1	0	0	0	0	0	0	1	0	17977	1449	50	5	3962	5	ZNF521	18	22930910	Splice_Site	DNP	TC	TCGA-KN-8437-01A-11D-2310-10		22930910	55146338	36	45091	634	2									
ZNF521	25925	broad.mit.edu;hgsc.bcm.edu	37	18	22930911	22930911	+	Splice_Site	SNP	C	C	A	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	A	22930911	C	A	22930911	5	1	712	1	0	0	0	0	0	0	1	0	17977	869	30	4	3963	4	ZNF521	18	22930911	Splice_Site	SNP	C	TCGA-KN-8437-01A-11D-2310-10	1	22930911	55146337	37	45092	634	2									
BRD4	23476	mdanderson.org	37	19	15350594	15350594	+	Silent	SNP	G	G	A	rs11669901	byfrequency	TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	A	15350594	G	A	15350594	2	1	712	1	0	0	0	0	0	0	0	1	1506	1045	37	1		1	BRD4	19	15350594	Silent	SNP	G	TCGA-KN-8437-01A-11D-2310-10		15350594	43778389	38	45093											
ZNF345	25850	hgsc.bcm.edu	37	19	37368304	37368304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	37368304	G	T	37368304	3	4	712	1	0	0	0	0	1	0	0	0	17871	1116	39	4	574	4	ZNF345	19	37368304	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	22017710	37368304	21760679	39	45094											
PSG6	5675	mdanderson.org	37	19	43411778	43411778	+	Missense_Mutation	SNP	C	C	T	rs707749	byfrequency	TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	43411778	C	T	43411778	3	4	712	1	0	0	0	0	1	0	0	0	12669	652	23	1	423	1	PSG6	19	43411778	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10	6043474	43411778	15717205	40	45095											
CBR1	873	broad.mit.edu	37	21	37443310	37443310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	G	37443310	A	G	37443310	3	3	712	1	0	0	0	0	1	0	0	0	2710	391	14	3	358	3	CBR1	21	37443310	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10		37443310	10686585	41	45096											
PRODH	5625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	18900771	18900771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	18900771	C	T	18900771	3	4	712	1	0	0	0	0	1	0	0	0	12558	623	22	2	86	2	PRODH	22	18900771	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10		18900771	32403795	42	45097											
MKL1	57591	mdanderson.org	37	22	40814636	40814636	+	Silent	SNP	C	C	T	rs4821944	byfrequency	TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	T	40814636	C	T	40814636	2	4	712	1	0	0	0	0	0	0	0	1	9608	639	23	1		1	MKL1	22	40814636	Silent	SNP	C	TCGA-KN-8437-01A-11D-2310-10	21913865	40814636	10489930	43	45098											
ATRX	546	broad.mit.edu	37	X	76763910	76763911	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	76763911	-	C	76763910	7	5	712	1	0	1	1	0	0	0	0	0	1208	378	14	0	84	0	ATRX	23	76763910	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10		76763910	78506650	44	45099											
TCEAL5	340543	mdanderson.org	37	X	102529084	102529084	+	Silent	SNP	T	T	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	102529084	T	C	102529084	2	2	712	1	0	0	0	0	0	0	0	1	15686	1606	56	3		3	TCEAL5	23	102529084	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10	25765174	102529084	52741476	45	45100											
RAB40A	142684	broad.mit.edu	37	X	102755467	102755468	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18	C	102755468	-	C	102755467	7	5	712	1	0	1	1	0	0	0	0	0	12952	1580	55	0	619	0	RAB40A	23	102755467	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10	226383	102755467	52515093	46	45101											
PRDM2	7799	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	14105033	14105033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	14105033	C	T	14105033	3	4	713	1	0	0	0	0	1	0	0	0	12468	594	21	2	769	2	PRDM2	1	14105033	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10		14105033	235145588	1	45102											
KIF17	57576	ucsc.edu	37	1	20998493	20998493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	20998493	T	C	20998493	3	2	713	1	0	0	0	0	1	0	0	0	8286	1667	58	3	445	3	KIF17	1	20998493	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	6893460	20998493	228252128	2	45103											
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34043016	34043016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	34043016	C	T	34043016	3	4	713	1	0	0	0	0	1	0	0	0	3947	652	23	1	3081	1	CSMD2	1	34043016	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	13044523	34043016	215207605	3	45104											
GPATCH4	54865	hgsc.bcm.edu	37	1	156565504	156565504	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	-	156565504	T	-	156565504	7	5	713	1	0	1	0	1	0	0	0	0	6600	1609	56	0	502	0	GPATCH4	1	156565504	Frame_Shift_Del	DEL	T	TCGA-KO-8403-01A-11D-2310-10	122522488	156565504	92685117	4	45105											
OR2L2	26246	mdanderson.org	37	1	248202412	248202412	+	Silent	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	248202412	C	T	248202412	2	4	713	1	0	0	0	0	0	0	0	1	11014	610	22	2		2	OR2L2	1	248202412	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10	91636908	248202412	1048209	5	45106											
SCN1A	6323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	166900204	166900204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	166900204	A	T	166900204	3	4	713	1	0	0	0	0	1	0	0	0	13927	449	16	5	4075	5	SCN1A	2	166900204	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10		166900204	76299169	6	45107											
GPR155	151556	ucsc.edu	37	2	175346286	175346286	+	Silent	SNP	T	T	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	175346286	T	C	175346286	2	2	713	1	0	0	0	0	0	0	0	1	6667	1606	56	3		3	GPR155	2	175346286	Silent	SNP	T	TCGA-KO-8403-01A-11D-2310-10	8446082	175346286	67853087	7	45108											
ATG7	10533	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	11340174	11340174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	11340174	C	T	11340174	3	4	713	1	0	0	0	0	1	0	0	0	1101	768	27	1	7	1	ATG7	3	11340174	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10		11340174	186682256	8	45109											
NDUFAF3	25915	broad.mit.edu	37	3	49059954	49059954	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	49059954	T	C	49059954	3	2	713	1	0	0	0	0	1	0	0	0	10283	1551	54	3	259	3	NDUFAF3	3	49059954	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	37719780	49059954	148962476	9	45110											
DNAH12	201625	broad.mit.edu	37	3	57431084	57431084	+	Silent	SNP	G	G	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	57431084	G	T	57431084	2	4	713	1	0	0	0	0	0	0	0	1	4602	929	33	4		4	DNAH12	3	57431084	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	8371130	57431084	140591346	10	45111											
SIAH2	6478	bcgsc.ca	37	3	150460253	150460253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	150460253	T	C	150460253	3	2	713	1	0	0	0	0	1	0	0	0	14313	1667	58	3	328	3	SIAH2	3	150460253	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	93029169	150460253	47562177	11	45112											
MUC4	4585	mdanderson.org	37	3	195507817	195507817	+	Missense_Mutation	SNP	A	A	G	rs200993341		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	G	195507817	A	G	195507817	3	3	713	1	0	0	0	0	1	0	0	0	9985	391	14	3		3	MUC4	3	195507817	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	45047564	195507817	2514613	12	45113											
FAM13A	10144	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	89668864	89668864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	89668864	G	T	89668864	3	4	713	1	0	0	0	0	1	0	0	0	5456	1232	43	4	799	4	FAM13A	4	89668864	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10		89668864	101485412	13	45114											
TRPC3	7222	mdanderson.org	37	4	122872719	122872719	+	Silent	SNP	G	G	A	rs1396082	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	122872719	G	A	122872719	2	1	713	1	0	0	0	0	0	0	0	1	16591	958	34	2		2	TRPC3	4	122872719	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	33203855	122872719	68281557	14	45115											
PCDHB3	56132	broad.mit.edu	37	5	140480872	140480872	+	Silent	SNP	C	C	T	rs148121148		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	140480872	C	T	140480872	2	4	713	1	0	0	0	0	0	0	0	1	11550	639	23	1		1	PCDHB3	5	140480872	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10		140480872	40434388	15	45116											
DIAPH1	1729	bcgsc.ca	37	5	140953097	140953097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	140953097	T	C	140953097	3	2	713	1	0	0	0	0	1	0	0	0	4520	1763	61	3	1550	3	DIAPH1	5	140953097	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	472225	140953097	39962163	16	45117											
MXD3	83463	mdanderson.org	37	5	176734855	176734855	+	Silent	SNP	G	G	C	rs4568379	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	176734855	G	C	176734855	2	2	713	1	0	0	0	0	0	0	0	1	10007	1103	39	4		4	MXD3	5	176734855	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	35781758	176734855	4180405	17	45118											
BTNL8	79908	broad.mit.edu;bcgsc.ca	37	5	180377222	180377222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	180377222	G	A	180377222	3	1	713	1	0	0	0	0	1	0	0	0	1569	1145	40	1	1367	1	BTNL8	5	180377222	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	3642367	180377222	538038	18	45119											
GLP1R	2740	ucsc.edu	37	6	39033549	39033549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	39033549	T	C	39033549	3	2	713	1	0	0	0	0	1	0	0	0	6459	1551	54	3	360	3	GLP1R	6	39033549	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10		39033549	132081518	19	45120											
MANEA	79694	mdanderson.org	37	6	96054262	96054262	+	Missense_Mutation	SNP	G	G	A	rs75510775	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	96054262	G	A	96054262	3	1	713	1	0	0	0	0	1	0	0	0	9228	1087	38	1	1384	1	MANEA	6	96054262	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	57020713	96054262	75060805	20	45121											
SERINC1	57515	broad.mit.edu	37	6	122768108	122768108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	G	122768108	A	G	122768108	3	3	713	1	0	0	0	0	1	0	0	0	14092	420	15	3	332	3	SERINC1	6	122768108	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	26713846	122768108	48346959	21	45122											
WIPF3	644150	broad.mit.edu	37	7	29924145	29924146	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	29924146	-	C	29924145	7	5	713	1	0	1	1	0	0	0	0	0	17381	1310	46	0	1049	0	WIPF3	7	29924145	Frame_Shift_Ins	INS	-	TCGA-KO-8403-01A-11D-2310-10		29924145	129214518	22	45123											
SLC39A4	55630	mdanderson.org	37	8	145641564	145641564	+	Missense_Mutation	SNP	T	T	G	rs2280839	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	G	145641564	T	G	145641564	3	3	713	1	0	0	0	0	1	0	0	0	14633	1783	62	5	1883	5	SLC39A4	8	145641564	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10		145641564	722458	23	45124											
ISCA1	81689	hgsc.bcm.edu;ucsc.edu	37	9	88897335	88897335	+	Silent	SNP	C	C	A	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	88897335	C	A	88897335	2	1	713	1	0	0	0	0	0	0	0	1	7856	813	29	4		4	ISCA1	9	88897335	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10		88897335	52316096	24	45125											
SIRT3	23410	broad.mit.edu;hgsc.bcm.edu	37	11	216703	216706	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	TGTC	TGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	-	216706	TGTC	-	216703	7	5	713	1	0	1	0	1	0	0	0	0	14352	1821	63	0	8	0	SIRT3	11	216703	Frame_Shift_Del	DEL	TGTC	TCGA-KO-8403-01A-11D-2310-10		216703	134789813	25	45126	635	2									
SIRT3	23410	bcgsc.ca	37	11	216704	216707	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	TGTC	TGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	-	216707	TGTC	-	216704	7	5	713	1	0	1	0	1	0	0	0	0	14352	1368	48	0	9	0	SIRT3	11	216704	Frame_Shift_Del	DEL	TGTC	TCGA-KO-8403-01A-11D-2310-10	1	216704	134789812	26	45127	635	2									
MUC6	4588	mdanderson.org	37	11	1018459	1018459	+	Missense_Mutation	SNP	G	G	T	rs199760270		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	1018459	G	T	1018459	3	4	713	1	0	0	0	0	1	0	0	0	9987	1174	41	4	2989	4	MUC6	11	1018459	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	801755	1018459	133988057	27	45128			1	137		2	2	15	N	G_A	2.62298e-05
MUC6	4588	mdanderson.org	37	11	1018473	1018473	+	Missense_Mutation	SNP	A	A	T	rs112923701		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	1018473	A	T	1018473	3	4	713	1	0	0	0	0	1	0	0	0	9987	72	3	5	3003	5	MUC6	11	1018473	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	14	1018473	133988043	28	45129			1	137		2	2	15	N	G_A	2.62298e-05
MUC2	4583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	1075670	1075670	+	Silent	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	1075670	C	T	1075670	2	4	713	1	0	0	0	0	0	0	0	1	9982	535	19	1		1	MUC2	11	1075670	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10	57197	1075670	133930846	29	45130											
ZDHHC13	54503	broad.mit.edu	37	11	19170858	19170858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	19170858	T	C	19170858	3	2	713	1	0	0	0	0	1	0	0	0	17615	1406	49	3	517	3	ZDHHC13	11	19170858	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	18095188	19170858	115835658	30	45131											
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	117307845	117307845	+	Silent	SNP	G	G	A	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	117307845	G	A	117307845	2	1	713	1	0	0	0	0	0	0	0	1	4771	1140	40	1		1	DSCAML1	11	117307845	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	98136987	117307845	17698671	31	45132											
CHD4	1108	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	6702730	6702730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	6702730	T	C	6702730	3	2	713	1	0	0	0	0	1	0	0	0	3329	1725	60	3	3472	3	CHD4	12	6702730	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10		6702730	127149165	32	45133											
DPPA3	359787	broad.mit.edu	37	12	7868798	7868798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	G	7868798	A	G	7868798	3	3	713	1	0	0	0	0	1	0	0	0	4737	246	9	3	342	3	DPPA3	12	7868798	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	1166068	7868798	125983097	33	45134											
HNF1A	6927	broad.mit.edu	37	12	121426736	121426736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	121426736	C	T	121426736	3	4	713	1	0	0	0	0	1	0	0	0	7258	594	21	2	433	2	HNF1A	12	121426736	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	113557938	121426736	12425159	34	45135											
KNTC1	9735	broad.mit.edu	37	12	123075242	123075242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	G	123075242	A	G	123075242	3	3	713	1	0	0	0	0	1	0	0	0	8435	72	3	3	4246	3	KNTC1	12	123075242	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	1648506	123075242	10776653	35	45136											
POTEM	641455	broad.mit.edu	37	14	20019957	20019957	+	Silent	SNP	G	G	A	rs28578761		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	20019957	G	A	20019957	2	1	713	1	0	0	0	0	0	0	0	1	12275	1020	36	2		2	POTEM	14	20019957	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10		20019957	87329583	36	45137											
SIX4	51804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	61186805	61186805	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	61186805	T	A	61186805	3	1	713	1	0	0	0	0	1	0	0	0	14362	1667	58	5	1131	5	SIX4	14	61186805	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	41166848	61186805	46162735	37	45138											
FAM98B	283742	broad.mit.edu	37	15	38776624	38776626	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	-	38776626	AGA	-	38776624	7	5	713	1	0	1	0	1	0	0	0	0	5664	296	11	0	1192	0	FAM98B	15	38776624	In_Frame_Del	DEL	AGA	TCGA-KO-8403-01A-11D-2310-10		38776624	63754768	38	45139											
SPTBN5	51332	mdanderson.org	37	15	42159290	42159290	+	Missense_Mutation	SNP	C	C	T	rs2290553	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	42159290	C	T	42159290	3	4	713	1	0	0	0	0	1	0	0	0	15134	652	23	1	4809	1	SPTBN5	15	42159290	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	3382666	42159290	60372102	39	45140											
MTFMT	123263	hgsc.bcm.edu	37	15	65321780	65321780	+	Missense_Mutation	SNP	A	A	T	rs188718836	by1000genomes	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	65321780	A	T	65321780	3	4	713	1	0	0	0	0	1	0	0	0	9931	43	2	5	1033	5	MTFMT	15	65321780	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	23162490	65321780	37209612	40	45141											
IL4R	3566	hgsc.bcm.edu	37	16	27374117	27374117	+	Silent	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	27374117	C	T	27374117	2	4	713	1	0	0	0	0	0	0	0	1	7705	680	24	2		2	IL4R	16	27374117	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10		27374117	62980636	41	45142											
CLEC18B	497190	mdanderson.org	37	16	74452114	74452114	+	Missense_Mutation	SNP	A	A	G	rs62052577		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	G	74452114	A	G	74452114	3	3	713	1	0	0	0	0	1	0	0	0	3505	188	7	3	1112	3	CLEC18B	16	74452114	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	47077997	74452114	15902639	42	45143											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	7577139	7577139	+	Missense_Mutation	SNP	G	G	A	rs55832599		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	7577139	G	A	7577139	3	1	713	1	0	0	0	0	1	0	0	0	16393	1144	40	1	487	1	TP53	17	7577139	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10		7577139	73618071	43	45144											
TP53	7157	broad.mit.edu	37	17	7577532	7577532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	7577532	G	A	7577532	3	1	713	1	0	0	0	0	1	0	0	0	16393	1232	43	2	541	2	TP53	17	7577532	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	393	7577532	73617678	44	45145											
ARL16	339231	mdanderson.org	37	17	79650828	79650828	+	Missense_Mutation	SNP	T	T	G	rs8066889	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	G	79650828	T	G	79650828	3	3	713	1	0	0	0	0	1	0	0	0	932	1551	54	5	585	5	ARL16	17	79650828	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	72073296	79650828	1544382	45	45146											
TCEB3B	51224	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	44561017	44561017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	44561017	G	T	44561017	3	4	713	1	0	0	0	0	1	0	0	0	15694	962	34	4	1646	4	TCEB3B	18	44561017	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10		44561017	33516231	46	45147											
MUC16	94025	mdanderson.org	37	19	9012840	9012840	+	Silent	SNP	G	G	A	rs4992692		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	9012840	G	A	9012840	2	1	713	1	0	0	0	0	0	0	0	1	9980	1140	40	1		1	MUC16	19	9012840	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10		9012840	50116143	47	45148											
ZNF846	162993	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	9869291	9869291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	9869291	G	C	9869291	3	2	713	1	0	0	0	0	1	0	0	0	18204	1020	36	4	1143	4	ZNF846	19	9869291	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	856451	9869291	49259692	48	45149											
HRC	3270	broad.mit.edu;hgsc.bcm.edu	37	19	49656872	49656872	+	Silent	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	49656872	C	T	49656872	2	4	713	1	0	0	0	0	0	0	0	1	7359	680	24	2		2	HRC	19	49656872	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10	39787581	49656872	9472111	49	45150											
PTOV1	53635	broad.mit.edu	37	19	50360994	50360996	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	-	50360996	CAA	-	50360994	7	5	713	1	0	1	0	1	0	0	0	0	12780	813	29	0	785	0	PTOV1	19	50360994	In_Frame_Del	DEL	CAA	TCGA-KO-8403-01A-11D-2310-10	704122	50360994	8767989	50	45151											
SIGLEC10	89790	mdanderson.org	37	19	51919235	51919235	+	Missense_Mutation	SNP	T	T	C	rs201089294	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	51919235	T	C	51919235	3	2	713	1	0	0	0	0	1	0	0	0	14319	1609	56	3	1180	3	SIGLEC10	19	51919235	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	1558241	51919235	7209748	51	45152	636	2									
SIGLEC10	89790	mdanderson.org	37	19	51919243	51919243	+	Silent	SNP	G	G	A	rs199660336	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	51919243	G	A	51919243	2	1	713	1	0	0	0	0	0	0	0	1	14319	1103	39	1		1	SIGLEC10	19	51919243	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	8	51919243	7209740	52	45153	636	2									
ZNF468	90333	ucsc.edu	37	19	53352380	53352380	+	Silent	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	53352380	C	T	53352380	2	4	713	1	0	0	0	0	0	0	0	1	17940	622	22	2		2	ZNF468	19	53352380	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10	1433137	53352380	5776603	53	45154											
ZNF419	79744	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	58004570	58004570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	58004570	A	C	58004570	3	2	713	1	0	0	0	0	1	0	0	0	17908	98	4	5	666	5	ZNF419	19	58004570	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	4652190	58004570	1124413	54	45155											
ZNF497	162968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	58868487	58868487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	58868487	C	T	58868487	3	4	713	1	0	0	0	0	1	0	0	0	17958	768	27	1	985	1	ZNF497	19	58868487	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	863917	58868487	260496	55	45156											
SIRPB1	10326	broad.mit.edu	37	20	1558987	1558987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	1558987	G	A	1558987	3	1	713	1	0	0	0	0	1	0	0	0	14346	1087	38	1	782	1	SIRPB1	20	1558987	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10		1558987	61466533	56	45157											
SYCP2	10388	bcgsc.ca	37	20	58461850	58461850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	58461850	C	T	58461850	3	4	713	1	0	0	0	0	1	0	0	0	15444	922	32	2	2272	2	SYCP2	20	58461850	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	56902863	58461850	4563670	57	45158											
YDJC	150223	hgsc.bcm.edu	37	22	21982830	21982830	+	Silent	SNP	C	C	T	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	T	21982830	C	T	21982830	2	4	713	1	0	0	0	0	0	0	0	1	17483	610	22	2		2	YDJC	22	21982830	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10		21982830	29321736	58	45159											
C22orf28	51493	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	32797733	32797733	+	Splice_Site	SNP	C	C	A	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	A	32797733	C	A	32797733	5	1	713	1	0	0	0	0	0	0	1	0	2142	579	20	4	1051	4	C22orf28	22	32797733	Splice_Site	SNP	C	TCGA-KO-8403-01A-11D-2310-10	10814903	32797733	18506833	59	45160											
TRIOBP	11078	mdanderson.org	37	22	38120429	38120429	+	Silent	SNP	T	T	C	rs6000868	bycluster;byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b	C	38120429	T	C	38120429	2	2	713	1	0	0	0	0	0	0	0	1	16565	1403	49	3		3	TRIOBP	22	38120429	Silent	SNP	T	TCGA-KO-8403-01A-11D-2310-10	5322696	38120429	13184137	60	45161											
SCNN1D	6339	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	1223338	1223338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	1223338	G	A	1223338	3	1	714	1	0	0	0	0	1	0	0	0	13942	1232	43	2	1323	2	SCNN1D	1	1223338	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10		1223338	248027283	1	45162											
ATAD3C	219293	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	1	1389871	1389871	+	Silent	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	1389871	C	T	1389871	2	4	714	1	0	0	0	0	0	0	0	1	1075	506	18	2		2	ATAD3C	1	1389871	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	166533	1389871	247860750	2	45163											
DFFA	1676	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	10527276	10527276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	10527276	T	C	10527276	3	2	714	1	0	0	0	0	1	0	0	0	4454	1464	51	3	623	3	DFFA	1	10527276	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	9137405	10527276	238723345	3	45164											
PPT1	5538	broad.mit.edu	37	1	40562824	40562825	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	40562825	-	G	40562824	7	5	714	1	0	1	1	0	0	0	0	0	12421	755	27	0	869	0	PPT1	1	40562824	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	30035548	40562824	208687797	4	45165											
SGIP1	84251	mdanderson.org;bcgsc.ca	37	1	67154849	67154849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	67154849	G	A	67154849	3	1	714	1	0	0	0	0	1	0	0	0	14219	1058	37	1	1396	1	SGIP1	1	67154849	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	26592025	67154849	182095772	5	45166											
ST6GALNAC5	81849	broad.mit.edu	37	1	77334277	77334279	+	In_Frame_Del	DEL	GCA	GCA	-	rs113832855	alternate_allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	77334279	GCA	-	77334277	7	5	714	1	0	1	0	1	0	0	0	0	15239	1074	38	0	117	0	ST6GALNAC5	1	77334277	In_Frame_Del	DEL	GCA	TCGA-KO-8404-01A-11D-2310-10	10179428	77334277	171916344	6	45167											
ARHGAP29	9411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	94639723	94639723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	94639723	C	T	94639723	4	4	714	1	0	0	0	0	0	1	0	0	878	595	21	2	301	2	ARHGAP29	1	94639723	Nonsense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	17305446	94639723	154610898	7	45168											
IGSF3	3321	mdanderson.org	37	1	117158748	117158748	+	Silent	SNP	A	A	G	rs199696016		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	117158748	A	G	117158748	2	3	714	1	0	0	0	0	0	0	0	1	7608	175	7	3		3	IGSF3	1	117158748	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	22519025	117158748	132091873	8	45169											
NBPF10	100132406	mdanderson.org	37	1	145302775	145302775	+	Missense_Mutation	SNP	T	T	G	rs71241610		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	145302775	T	G	145302775	3	3	714	1	0	0	0	0	1	0	0	0	10200	1638	57	5	1243	5	NBPF10	1	145302775	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	28144027	145302775	103947846	9	45170											
APH1A	51107	broad.mit.edu;mdanderson.org	37	1	150240152	150240152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	150240152	C	T	150240152	3	4	714	1	0	0	0	0	1	0	0	0	771	661	23	1	506	1	APH1A	1	150240152	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	4937377	150240152	99010469	10	45171											
HRNR	388697	mdanderson.org	37	1	152192163	152192163	+	Missense_Mutation	SNP	G	G	T	rs61814943	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	152192163	G	T	152192163	3	4	714	1	0	0	0	0	1	0	0	0	7366	1058	37	4	6614	4	HRNR	1	152192163	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	1952011	152192163	97058458	11	45172											
MUC1	4582	broad.mit.edu	37	1	155160853	155160854	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	GGG	155160854	-	GGG	155160853	7	5	714	1	0	1	1	0	0	0	0	0	9977	87	3	0		0	MUC1	1	155160853	In_Frame_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	2968690	155160853	94089768	12	45173											
DNM3	26052	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	1	172037991	172037991	+	Silent	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	172037991	G	A	172037991	2	1	714	1	0	0	0	0	0	0	0	1	4675	1103	39	1		1	DNM3	1	172037991	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	16877138	172037991	77212630	13	45174											
ABCG8	64241	broad.mit.edu	37	2	44102406	44102407	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	44102407	-	G	44102406	7	5	714	1	0	1	1	0	0	0	0	0	72	1580	55	0	1652	0	ABCG8	2	44102406	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10		44102406	199096967	14	45175											
LRPPRC	10128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	44139675	44139675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	44139675	A	T	44139675	3	4	714	1	0	0	0	0	1	0	0	0	8972	214	8	5	1049	5	LRPPRC	2	44139675	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	37269	44139675	199059698	15	45176											
ANKRD36B	57730	broad.mit.edu	37	2	98129746	98129746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	98129746	G	-	98129746	7	5	714	1	0	1	0	1	0	0	0	0	666	1377	48	0	1383	0	ANKRD36B	2	98129746	Frame_Shift_Del	DEL	G	TCGA-KO-8404-01A-11D-2310-10	53990071	98129746	145069627	16	45177											
IL1RL1	9173	broad.mit.edu	37	2	102959759	102959760	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	102959760	-	G	102959759	7	5	714	1	0	1	1	0	0	0	0	0	7670	1464	51	0	880	0	IL1RL1	2	102959759	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	4830013	102959759	140239614	17	45178											
RGPD4	285190	broad.mit.edu	37	2	108487353	108487354	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	108487354	-	A	108487353	7	5	714	1	0	1	1	0	0	0	0	0	13301	595	21	0	2971	0	RGPD4	2	108487353	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	5527594	108487353	134712020	18	45179											
AOX1	316	broad.mit.edu;mdanderson.org;bcgsc.ca	37	2	201462175	201462175	+	Missense_Mutation	SNP	G	G	A	rs200659056	alternate_allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	201462175	G	A	201462175	3	1	714	1	0	0	0	0	1	0	0	0	729	1145	40	1	270	1	AOX1	2	201462175	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	92974822	201462175	41737198	19	45180											
STRADB	55437	mdanderson.org	37	2	202344886	202344886	+	Silent	SNP	C	C	T	rs146098224		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	202344886	C	T	202344886	2	4	714	1	0	0	0	0	0	0	0	1	15337	576	20	2		2	STRADB	2	202344886	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	882711	202344886	40854487	20	45181											
PRKAG3	53632	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	219695480	219695480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	219695480	C	A	219695480	3	1	714	1	0	0	0	0	1	0	0	0	12512	507	18	4	1295	4	PRKAG3	2	219695480	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	17350594	219695480	23503893	21	45182											
ABHD14A	25864	broad.mit.edu	37	3	52014930	52014930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	52014930	A	C	52014930	3	2	714	1	0	0	0	0	1	0	0	0	79	130	5	5	730	5	ABHD14A	3	52014930	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10		52014930	146007500	22	45183											
SLC15A2	6565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	121659851	121659851	+	Silent	SNP	C	C	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	121659851	C	A	121659851	2	1	714	1	0	0	0	0	0	0	0	1	14412	900	32	4		4	SLC15A2	3	121659851	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	69644921	121659851	76362579	23	45184											
FAM162A	26355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	122123174	122123174	+	Missense_Mutation	SNP	G	G	A	rs149572114	by1000genomes;alternate_allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	122123174	G	A	122123174	3	1	714	1	0	0	0	0	1	0	0	0	5478	1087	38	1	237	1	FAM162A	3	122123174	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	463323	122123174	75899256	24	45185											
HEG1	57493	mdanderson.org	37	3	124732419	124732419	+	Silent	SNP	A	A	G	rs202026679		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	124732419	A	G	124732419	2	3	714	1	0	0	0	0	0	0	0	1	7051	59	3	3		3	HEG1	3	124732419	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	2609245	124732419	73290011	25	45186											
KLF15	28999	broad.mit.edu	37	3	126070866	126070867	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	126070867	-	G	126070866	7	5	714	1	0	1	1	0	0	0	0	0	8350	175	7	0	358	0	KLF15	3	126070866	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	1338447	126070866	71951564	26	45187											
COL6A5	256076	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	130098678	130098678	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	130098678	G	C	130098678	3	2	714	1	0	0	0	0	1	0	0	0	3704	1058	37	4	1095	4	COL6A5	3	130098678	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	4027812	130098678	67923752	27	45188											
WWTR1	25937	broad.mit.edu;bcgsc.ca	37	3	149245708	149245708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	149245708	G	A	149245708	3	1	714	1	0	0	0	0	1	0	0	0	17429	1232	43	2	394	2	WWTR1	3	149245708	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	19147030	149245708	48776722	28	45189											
HTR3E	285242	broad.mit.edu;mdanderson.org	37	3	183824286	183824287	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	TG	183824287	GC	TG	183824286	3	4	714	1	0	0	0	0	1	0	0	0	7455	1319	46	4	1251	4	HTR3E	3	183824286	Missense_Mutation	DNP	GC	TCGA-KO-8404-01A-11D-2310-10	34578578	183824286	14198144	29	45190											
MUC4	4585	broad.mit.edu;mdanderson.org	37	3	195505819	195505819	+	Missense_Mutation	SNP	A	A	T	rs425588	alternate_allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	195505819	A	T	195505819	3	4	714	1	0	0	0	0	1	0	0	0	9985	275	10	5		5	MUC4	3	195505819	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	11681533	195505819	2516611	30	45191											
MUC4	4585	mdanderson.org	37	3	195515069	195515069	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	195515069	A	C	195515069	3	2	714	1	0	0	0	0	1	0	0	0	9985	304	11	5		5	MUC4	3	195515069	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	9250	195515069	2507361	31	45192											
TMEM175	84286	bcgsc.ca	37	4	951677	951677	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	951677	T	A	951677	3	1	714	1	0	0	0	0	1	0	0	0	16103	1580	55	5	946	5	TMEM175	4	951677	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10		951677	190202599	32	45193											
OTOP1	133060	mdanderson.org	37	4	4190576	4190577	+	Missense_Mutation	DNP	CG	CG	GC	rs200368405		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	GC	4190577	CG	GC	4190576	3	3	714	1	0	0	0	0	1	0	0	0	11312	884	31	4	49	4	OTOP1	4	4190576	Missense_Mutation	DNP	CG	TCGA-KO-8404-01A-11D-2310-10	3238899	4190576	186963700	33	45194											
NCAPG	64151	broad.mit.edu	37	4	17844972	17844973	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	17844973	-	A	17844972	7	5	714	1	0	1	1	0	0	0	0	0	10214	594	21	0	3054	0	NCAPG	4	17844972	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	13654396	17844972	173309304	34	45195											
UGT2A3	79799	broad.mit.edu;mdanderson.org	37	4	69795705	69795705	+	Silent	SNP	T	T	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	69795705	T	G	69795705	2	3	714	1	0	0	0	0	0	0	0	1	16967	1538	54	5		5	UGT2A3	4	69795705	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10	51950733	69795705	121358571	35	45196											
FAM190A	401145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	91229575	91229575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	91229575	C	T	91229575	3	4	714	1	0	0	0	0	1	0	0	0	5525	855	30	2	142	2	FAM190A	4	91229575	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	21433870	91229575	99924701	36	45197											
TTC29	83894	mdanderson.org;bcgsc.ca	37	4	147795877	147795877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	147795877	C	T	147795877	3	4	714	1	0	0	0	0	1	0	0	0	16708	797	28	2	665	2	TTC29	4	147795877	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	56566302	147795877	43358399	37	45198											
PAPD7	11044	mdanderson.org	37	5	6753008	6753008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	6753008	C	T	6753008	3	4	714	1	0	0	0	0	1	0	0	0	11433	652	23	1	1334	1	PAPD7	5	6753008	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		6753008	174162252	38	45199											
OCLN	100506658	broad.mit.edu	37	5	68840857	68840857	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	68840857	A	-	68840857	7	5	714	1	0	1	0	1	0	0	0	0	10827	233	9	0	1182	0	OCLN	5	68840857	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	62087849	68840857	112074403	39	45200											
CAMK4	814	broad.mit.edu	37	5	110560256	110560257	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	110560257	-	G	110560256	7	5	714	1	0	1	1	0	0	0	0	0	2607	639	23	0	77	0	CAMK4	5	110560256	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	41719399	110560256	70355004	40	45201											
SEMA6A	57556	broad.mit.edu	37	5	115782974	115782975	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	115782975	-	G	115782974	7	5	714	1	0	1	1	0	0	0	0	0	14052	1580	55	0	668	0	SEMA6A	5	115782974	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	5222718	115782974	65132286	41	45202											
PCDHB10	56126	mdanderson.org	37	5	140573473	140573473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	140573473	G	A	140573473	3	1	714	1	0	0	0	0	1	0	0	0	11542	1087	38	1	1350	1	PCDHB10	5	140573473	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	24790499	140573473	40341787	42	45203											
GLRA1	2741	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	151202298	151202298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	151202298	A	C	151202298	3	2	714	1	0	0	0	0	1	0	0	0	6461	101	4	5	67	5	GLRA1	5	151202298	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	10628825	151202298	29712962	43	45204											
OR2B2	81697	bcgsc.ca	37	6	27879484	27879484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	27879484	A	G	27879484	3	3	714	1	0	0	0	0	1	0	0	0	10996	420	15	3	463	3	OR2B2	6	27879484	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10		27879484	143235583	44	45205											
SCAND3	114821	hgsc.bcm.edu;ucsc.edu	37	6	28542931	28542931	+	Silent	SNP	A	A	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	28542931	A	T	28542931	2	4	714	1	0	0	0	0	0	0	0	1	13889	291	11	5		5	SCAND3	6	28542931	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	663447	28542931	142572136	45	45206											
CCHCR1	54535	broad.mit.edu;hgsc.bcm.edu	37	6	31122478	31122478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	31122478	A	G	31122478	3	3	714	1	0	0	0	0	1	0	0	0	2879	304	11	3	2079	3	CCHCR1	6	31122478	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	2579547	31122478	139992589	46	45207											
HLA-DRB5	3127	mdanderson.org	37	6	32487390	32487390	+	Missense_Mutation	SNP	T	T	G	rs77180119	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	32487390	T	G	32487390	3	3	714	1	0	0	0	0	1	0	0	0	7216	1667	58	5	407	5	HLA-DRB5	6	32487390	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	1364912	32487390	138627677	47	45208	637	2									
HLA-DRB5	3127	mdanderson.org	37	6	32487398	32487398	+	Missense_Mutation	SNP	C	C	T	rs115198947	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	32487398	C	T	32487398	3	4	714	1	0	0	0	0	1	0	0	0	7216	681	24	2	415	2	HLA-DRB5	6	32487398	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	8	32487398	138627669	48	45209	637	2									
HLA-DRB5	3127	mdanderson.org	37	6	32497970	32497970	+	Missense_Mutation	SNP	T	T	C	rs201644181		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	32497970	T	C	32497970	3	2	714	1	0	0	0	0	1	0	0	0	7216	1638	57	3	792	3	HLA-DRB5	6	32497970	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	10572	32497970	138617097	49	45210											
SYNGAP1	8831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	33405554	33405554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	33405554	A	C	33405554	3	2	714	1	0	0	0	0	1	0	0	0	15459	449	16	5	902	5	SYNGAP1	6	33405554	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	907584	33405554	137709513	50	45211											
COL19A1	1310	broad.mit.edu;mdanderson.org	37	6	70873233	70873233	+	Splice_Site	SNP	A	A	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	70873233	A	T	70873233	5	4	714	1	0	0	0	0	0	0	1	0	3678	202	7	5	2483	5	COL19A1	6	70873233	Splice_Site	SNP	A	TCGA-KO-8404-01A-11D-2310-10	37467679	70873233	100241834	51	45212											
TRIM50	135892	mdanderson.org	37	7	72734197	72734197	+	Silent	SNP	T	T	C	rs3108461		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	72734197	T	C	72734197	2	2	714	1	0	0	0	0	0	0	0	1	16538	1838	64	3		3	TRIM50	7	72734197	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10		72734197	86404466	52	45213											
NCF1	653361	mdanderson.org	37	7	74197914	74197914	+	Silent	SNP	G	G	A	rs1637127	bycluster	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	74197914	G	A	74197914	2	1	714	1	0	0	0	0	0	0	0	1	10223	1132	40	1		1	NCF1	7	74197914	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	1463717	74197914	84940749	53	45214											
FGL2	10875	broad.mit.edu;mdanderson.org	37	7	76828642	76828642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	76828642	G	A	76828642	3	1	714	1	0	0	0	0	1	0	0	0	5880	1058	37	1	858	1	FGL2	7	76828642	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	2630728	76828642	82310021	54	45215											
LMTK2	22853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	97820153	97820153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	97820153	C	T	97820153	3	4	714	1	0	0	0	0	1	0	0	0	8866	652	23	1	1150	1	LMTK2	7	97820153	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	20991511	97820153	61318510	55	45216											
SMO	6608	broad.mit.edu	37	7	128846110	128846111	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	128846111	-	C	128846110	7	5	714	1	0	1	1	0	0	0	0	0	14813	1203	42	0	1058	0	SMO	7	128846110	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	31025957	128846110	30292553	56	45217											
SHH	6469	broad.mit.edu	37	7	155604741	155604742	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	155604742	-	C	155604741	7	5	714	1	0	1	1	0	0	0	0	0	14292	1261	44	0	1324	0	SHH	7	155604741	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	26758631	155604741	3533922	57	45218											
UBE3C	9690	mdanderson.org	37	7	157041098	157041099	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	TT	157041099	GC	TT	157041098	3	4	714	1	0	0	0	0	1	0	0	0	16893	1319	46	4	2592	4	UBE3C	7	157041098	Missense_Mutation	DNP	GC	TCGA-KO-8404-01A-11D-2310-10	1436357	157041098	2097565	58	45219	638	2									
UBE3C	9690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	157041099	157041099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	157041099	C	T	157041099	3	4	714	1	0	0	0	0	1	0	0	0	16893	710	25	2	2593	2	UBE3C	7	157041099	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	1	157041099	2097564	59	45220	638	2									
CSMD1	64478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	2836315	2836315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	2836315	G	T	2836315	3	4	714	1	0	0	0	0	1	0	0	0	3946	1020	36	4	2373	4	CSMD1	8	2836315	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10		2836315	143527707	60	45221											
PABPC1	26986	mdanderson.org	37	8	101719138	101719138	+	Missense_Mutation	SNP	C	C	T	rs79940439		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	101719138	C	T	101719138	3	4	714	1	0	0	0	0	1	0	0	0	11370	884	31	1	506	1	PABPC1	8	101719138	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	98882823	101719138	44644884	61	45222											
TG	7038	broad.mit.edu	37	8	133913781	133913782	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	133913782	-	C	133913781	7	5	714	1	0	1	1	0	0	0	0	0	15825	1203	42	0	3679	0	TG	8	133913781	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	32194643	133913781	12450241	62	45223											
GLDC	2731	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	6536228	6536228	+	Missense_Mutation	SNP	C	C	T	rs146939116		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	6536228	C	T	6536228	3	4	714	1	0	0	0	0	1	0	0	0	6440	768	27	1	400	1	GLDC	9	6536228	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		6536228	134677203	63	45224											
ADAMTSL1	92949	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	18706839	18706839	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	18706839	C	T	18706839	4	4	714	1	0	0	0	0	0	1	0	0	274	827	29	2	1727	2	ADAMTSL1	9	18706839	Nonsense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	12170611	18706839	122506592	64	45225											
MUSK	4593	broad.mit.edu	37	9	113459692	113459692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	113459692	G	A	113459692	3	1	714	1	0	0	0	0	1	0	0	0	9996	1203	42	2	592	2	MUSK	9	113459692	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	94752853	113459692	27753739	65	45226											
STAM	8027	broad.mit.edu	37	10	17756602	17756603	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	17756603	-	C	17756602	7	5	714	1	0	1	1	0	0	0	0	0	15260	1538	54	0	1500	0	STAM	10	17756602	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10		17756602	117778145	66	45227											
MYO3A	53904	mdanderson.org	37	10	26286159	26286159	+	Silent	SNP	G	G	T	rs12257119	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	26286159	G	T	26286159	2	4	714	1	0	0	0	0	0	0	0	1	10083	1103	39	4		4	MYO3A	10	26286159	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	8529557	26286159	109248588	67	45228											
MUC6	4588	mdanderson.org	37	11	1016645	1016645	+	Silent	SNP	G	G	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	1016645	G	C	1016645	2	2	714	1	0	0	0	0	0	0	0	1	9987	1277	45	4		4	MUC6	11	1016645	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10		1016645	133989871	68	45229											
MUC6	4588	mdanderson.org	37	11	1017200	1017200	+	Silent	SNP	G	G	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	1017200	G	C	1017200	2	2	714	1	0	0	0	0	0	0	0	1	9987	987	35	4		4	MUC6	11	1017200	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	555	1017200	133989316	69	45230											
KRTAP5-1	387264	mdanderson.org	37	11	1605979	1605979	+	Silent	SNP	A	A	G	rs59646474	bycluster	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	1605979	A	G	1605979	2	3	714	1	0	0	0	0	0	0	0	1	8565	157	6	3		3	KRTAP5-1	11	1605979	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	588779	1605979	133400537	70	45231											
OR51M1	390059	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	5410780	5410780	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	5410780	T	A	5410780	3	1	714	1	0	0	0	0	1	0	0	0	11110	1435	50	5	154	5	OR51M1	11	5410780	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	3804801	5410780	129595736	71	45232											
OR56A1	120796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	6048328	6048328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	6048328	T	C	6048328	3	2	714	1	0	0	0	0	1	0	0	0	11140	1588	55	3	353	3	OR56A1	11	6048328	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	637548	6048328	128958188	72	45233											
OR2D3	120775	ucsc.edu	37	11	6942589	6942589	+	Silent	SNP	C	C	T	rs202205015		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	6942589	C	T	6942589	2	4	714	1	0	0	0	0	0	0	0	1	11002	900	32	2		2	OR2D3	11	6942589	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	894261	6942589	128063927	73	45234											
PTPN5	84867	broad.mit.edu;mdanderson.org	37	11	18755149	18755149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	18755149	T	C	18755149	3	2	714	1	0	0	0	0	1	0	0	0	12804	1667	58	3	687	3	PTPN5	11	18755149	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	11812560	18755149	116251367	74	45235											
DGKZ	8525	broad.mit.edu	37	11	46398729	46398730	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	46398730	CT	-	46398729	7	5	714	1	0	1	0	1	0	0	0	0	4476	681	24	0	3418	0	DGKZ	11	46398729	Frame_Shift_Del	DEL	CT	TCGA-KO-8404-01A-11D-2310-10	27643580	46398729	88607787	75	45236											
OR1S2	219958	mdanderson.org	37	11	57970967	57970967	+	Silent	SNP	G	G	A	rs138762515	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	57970967	G	A	57970967	2	1	714	1	0	0	0	0	0	0	0	1	10980	933	33	2		2	OR1S2	11	57970967	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	11572238	57970967	77035549	76	45237											
OR1S1	219959	broad.mit.edu;mdanderson.org	37	11	57982580	57982580	+	Missense_Mutation	SNP	G	G	A	rs147498041		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	57982580	G	A	57982580	3	1	714	1	0	0	0	0	1	0	0	0	10979	1145	40	1	366	1	OR1S1	11	57982580	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	11613	57982580	77023936	77	45238											
FRMD8	83786	broad.mit.edu	37	11	65161559	65161560	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	65161560	-	G	65161559	7	5	714	1	0	1	1	0	0	0	0	0	6063	759	27	0	417	0	FRMD8	11	65161559	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	7178979	65161559	69844957	78	45239											
CATSPER1	117144	broad.mit.edu	37	11	65792709	65792709	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	65792709	A	-	65792709	7	5	714	1	0	1	0	1	0	0	0	0	2689	275	10	0	1248	0	CATSPER1	11	65792709	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	631150	65792709	69213807	79	45240											
C11orf80	79703	broad.mit.edu;hgsc.bcm.edu	37	11	66555695	66555696	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	66555696	-	A	66555695	7	5	714	1	0	1	1	0	0	0	0	0	1666	1500	52	0	606	0	C11orf80	11	66555695	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	762986	66555695	68450821	80	45241	639	2									
C11orf80	79703	bcgsc.ca	37	11	66555696	66555697	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	66555697	-	A	66555696	7	5	714	1	0	1	1	0	0	0	0	0	1666	1783	62	0	607	0	C11orf80	11	66555696	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	1	66555696	68450820	81	45242	639	2									
KRTAP5-7	440050	mdanderson.org	37	11	71238645	71238645	+	Missense_Mutation	SNP	C	C	A	rs201904441		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	71238645	C	A	71238645	3	1	714	1	0	0	0	0	1	0	0	0	8573	623	22	4	301	4	KRTAP5-7	11	71238645	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	4682949	71238645	63767871	82	45243											
KRTAP5-7	440050	mdanderson.org	37	11	71238685	71238685	+	Silent	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	71238685	G	A	71238685	2	1	714	1	0	0	0	0	0	0	0	1	8573	1020	36	2		2	KRTAP5-7	11	71238685	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	40	71238685	63767831	83	45244											
OR8B2	26595	mdanderson.org	37	11	124252982	124252982	+	Silent	SNP	C	C	T	rs71491825		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	124252982	C	T	124252982	2	4	714	1	0	0	0	0	0	0	0	1	11234	465	17	2		2	OR8B2	11	124252982	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	53014297	124252982	10753534	84	45245											
NANOG	79923	mdanderson.org	37	12	7947571	7947571	+	Silent	SNP	C	C	T	rs74826360	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	7947571	C	T	7947571	2	4	714	1	0	0	0	0	0	0	0	1	10157	668	24	2		2	NANOG	12	7947571	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10		7947571	125904324	85	45246											
TAS2R10	50839	broad.mit.edu;mdanderson.org	37	12	10978222	10978222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	10978222	T	C	10978222	3	2	714	1	0	0	0	0	1	0	0	0	15578	1667	58	3	280	3	TAS2R10	12	10978222	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	3030651	10978222	122873673	86	45247											
TAS2R30	259293	mdanderson.org	37	12	11286164	11286164	+	Missense_Mutation	SNP	G	G	A	rs200661425		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	11286164	G	A	11286164	3	1	714	1	0	0	0	0	1	0	0	0	15585	971	34	2	283	2	TAS2R30	12	11286164	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	307942	11286164	122565731	87	45248											
C12orf77	196415	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	25147251	25147251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	25147251	C	T	25147251	3	4	714	1	0	0	0	0	1	0	0	0	1718	710	25	2	23	2	C12orf77	12	25147251	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	13861087	25147251	108704644	88	45249											
DDX11	1663	mdanderson.org	37	12	31242981	31242981	+	Silent	SNP	C	C	A	rs3892690		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	31242981	C	A	31242981	2	1	714	1	0	0	0	0	0	0	0	1	4345	643	23	4		4	DDX11	12	31242981	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	6095730	31242981	102608914	89	45250											
FMNL3	91010	broad.mit.edu	37	12	50042932	50042932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	50042932	T	C	50042932	3	2	714	1	0	0	0	0	1	0	0	0	5960	1638	57	3	712	3	FMNL3	12	50042932	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	18799951	50042932	83808963	90	45251											
KRT3	3850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	53189775	53189775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	53189775	C	T	53189775	3	4	714	1	0	0	0	0	1	0	0	0	8473	652	23	1	1870	1	KRT3	12	53189775	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	3146843	53189775	80662120	91	45252											
NAB2	4665	mdanderson.org	37	12	57485373	57485373	+	Silent	SNP	G	G	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	57485373	G	T	57485373	2	4	714	1	0	0	0	0	0	0	0	1	10139	1161	41	4		4	NAB2	12	57485373	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	4295598	57485373	76366522	92	45253											
OSBPL8	114882	broad.mit.edu	37	12	76763581	76763582	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	76763582	-	C	76763581	7	5	714	1	0	1	1	0	0	0	0	0	11290	1538	54	0	613	0	OSBPL8	12	76763581	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	19278208	76763581	57088314	93	45254											
PPP1CC	5501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	111160464	111160464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	111160464	C	T	111160464	3	4	714	1	0	0	0	0	1	0	0	0	12361	652	23	1	423	1	PPP1CC	12	111160464	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	34396883	111160464	22691431	94	45255											
UBC	7316	mdanderson.org	37	12	125397895	125397895	+	Silent	SNP	A	A	G	rs199930220		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	125397895	A	G	125397895	2	3	714	1	0	0	0	0	0	0	0	1	16854	407	15	3		3	UBC	12	125397895	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	14237431	125397895	8454000	95	45256											
PABPC3	5042	mdanderson.org	37	13	25670877	25670877	+	Missense_Mutation	SNP	G	G	A	rs112107735		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	25670877	G	A	25670877	3	1	714	1	0	0	0	0	1	0	0	0	11372	971	34	2	543	2	PABPC3	13	25670877	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10		25670877	89499001	96	45257											
PABPC3	5042	mdanderson.org	37	13	25671786	25671786	+	Missense_Mutation	SNP	G	G	A	rs113301206	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	25671786	G	A	25671786	3	1	714	1	0	0	0	0	1	0	0	0	11372	1029	36	2	1452	2	PABPC3	13	25671786	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	909	25671786	89498092	97	45258											
RB1	5925	broad.mit.edu;hgsc.bcm.edu	37	13	49039350	49039359	+	Frame_Shift_Del	DEL	TTGTCACCAA	TTGTCACCAA	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	TTGTCACCAA	TTGTCACCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	49039359	TTGTCACCAA	-	49039350	7	5	714	1	0	1	0	1	0	0	0	0	13111	1606	56	0	2425	0	RB1	13	49039350	Frame_Shift_Del	DEL	TTGTCACCAA	TCGA-KO-8404-01A-11D-2310-10	23367564	49039350	66130528	98	45259	640	2									
RB1	5925	bcgsc.ca	37	13	49039351	49039360	+	Frame_Shift_Del	DEL	TTGTCACCAA	TTGTCACCAA	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	TTGTCACCAA	TTGTCACCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	49039360	TTGTCACCAA	-	49039351	7	5	714	1	0	1	0	1	0	0	0	0	13111	1821	63	0	2426	0	RB1	13	49039351	Frame_Shift_Del	DEL	TTGTCACCAA	TCGA-KO-8404-01A-11D-2310-10	1	49039351	66130527	99	45260	640	2									
HOMEZ	57594	mdanderson.org	37	14	23744844	23744844	+	Silent	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	23744844	C	T	23744844	2	4	714	1	0	0	0	0	0	0	0	1	7288	680	24	2		2	HOMEZ	14	23744844	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10		23744844	83604696	100	45261	641	2									
HOMEZ	57594	mdanderson.org	37	14	23744847	23744847	+	Silent	SNP	T	T	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	23744847	T	C	23744847	2	2	714	1	0	0	0	0	0	0	0	1	7288	1606	56	3		3	HOMEZ	14	23744847	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10	3	23744847	83604693	101	45262	641	2									
KLHDC2	23588	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	50244621	50244621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	50244621	G	A	50244621	3	1	714	1	0	0	0	0	1	0	0	0	8363	1174	41	2	430	2	KLHDC2	14	50244621	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	26499774	50244621	57104919	102	45263											
ADAM21	8747	mdanderson.org	37	14	70924613	70924613	+	Nonsense_Mutation	SNP	C	C	T	rs138262361	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	70924613	C	T	70924613	4	4	714	1	0	0	0	0	0	1	0	0	243	876	31	1	399	1	ADAM21	14	70924613	Nonsense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	20679992	70924613	36424927	103	45264											
AHNAK2	113146	mdanderson.org	37	14	105416323	105416323	+	Missense_Mutation	SNP	T	T	C	rs11847209	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	105416323	T	C	105416323	3	2	714	1	0	0	0	0	1	0	0	0	415	1609	56	3	11926	3	AHNAK2	14	105416323	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	34491710	105416323	1933217	104	45265											
CHRFAM7A	89832	broad.mit.edu	37	15	30659650	30659651	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	30659651	-	G	30659650	7	5	714	1	0	1	1	0	0	0	0	0	3377	884	31	0	555	0	CHRFAM7A	15	30659650	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10		30659650	71871742	105	45266											
ITGA11	22801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	15	68624721	68624721	+	Silent	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	68624721	G	A	68624721	2	1	714	1	0	0	0	0	0	0	0	1	7881	1136	40	1		1	ITGA11	15	68624721	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	37965071	68624721	33906671	106	45267											
CACNA1H	8912	ucsc.edu	37	16	1250559	1250559	+	Silent	SNP	T	T	C	rs8044363	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	1250559	T	C	1250559	2	2	714	1	0	0	0	0	0	0	0	1	2547	1800	63	3		3	CACNA1H	16	1250559	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10		1250559	89104194	107	45268											
C16orf59	80178	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	2512477	2512477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	2512477	G	A	2512477	3	1	714	1	0	0	0	0	1	0	0	0	1825	1116	39	1	838	1	C16orf59	16	2512477	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	1261918	2512477	87842276	108	45269											
ADCY9	115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	4029168	4029168	+	Silent	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	4029168	G	A	4029168	2	1	714	1	0	0	0	0	0	0	0	1	301	1103	39	1		1	ADCY9	16	4029168	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	1516691	4029168	86325585	109	45270											
ACSM2A	123876	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	16	20497990	20497990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	20497990	G	A	20497990	3	1	714	1	0	0	0	0	1	0	0	0	183	1145	40	1	1774	1	ACSM2A	16	20497990	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	16468822	20497990	69856763	110	45271											
CYLD	1540	broad.mit.edu;mdanderson.org	37	16	50825539	50825539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	50825539	G	A	50825539	3	1	714	1	0	0	0	0	1	0	0	0	4145	1145	40	1	2229	1	CYLD	16	50825539	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	30327549	50825539	39529214	111	45272											
MLYCD	23417	broad.mit.edu;hgsc.bcm.edu	37	16	83941751	83941752	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	83941752	-	A	83941751	7	5	714	1	0	1	1	0	0	0	0	0	9645	1638	57	0	672	0	MLYCD	16	83941751	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	33116212	83941751	6413002	112	45273	642	2									
MLYCD	23417	bcgsc.ca	37	16	83941752	83941753	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	83941753	-	A	83941752	7	5	714	1	0	1	1	0	0	0	0	0	9645	349	13	0	673	0	MLYCD	16	83941752	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	1	83941752	6413001	113	45274	642	2									
ZNF232	7775	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	5012951	5012951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	5012951	C	T	5012951	3	4	714	1	0	0	0	0	1	0	0	0	17797	768	27	1	1110	1	ZNF232	17	5012951	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		5012951	76182259	114	45275											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	7577609	7577609	+	Splice_Site	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	7577609	C	T	7577609	5	4	714	1	0	0	0	0	0	0	1	0	16393	695	24	2	618	2	TP53	17	7577609	Splice_Site	SNP	C	TCGA-KO-8404-01A-11D-2310-10	2564658	7577609	73617601	115	45276											
RAI1	10743	broad.mit.edu	37	17	17700804	17700805	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	17700805	-	C	17700804	7	5	714	1	0	1	1	0	0	0	0	0	13020	1194	42	0	4544	0	RAI1	17	17700804	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	10123195	17700804	63494406	116	45277											
LGALS9C	654346	broad.mit.edu	37	17	18387252	18387252	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	18387252	G	-	18387252	7	5	714	1	0	1	0	1	0	0	0	0	8757	1348	47	0	109	0	LGALS9C	17	18387252	Frame_Shift_Del	DEL	G	TCGA-KO-8404-01A-11D-2310-10	686448	18387252	62807958	117	45278											
KRTAP4-8	728224	mdanderson.org	37	17	39254149	39254149	+	Missense_Mutation	SNP	G	G	C	rs201246375		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	39254149	G	C	39254149	3	2	714	1	0	0	0	0	1	0	0	0	8563	1261	44	4	373	4	KRTAP4-8	17	39254149	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	20866897	39254149	41941061	118	45279											
CDC27	996	mdanderson.org	37	17	45234325	45234325	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	45234325	G	A	45234325	4	1	714	1	0	0	0	0	0	1	0	0	3068	1066	37	1	1748	1	CDC27	17	45234325	Nonsense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	5980176	45234325	35960885	119	45280											
CDC27	996	mdanderson.org	37	17	45234625	45234625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	45234625	C	T	45234625	3	4	714	1	0	0	0	0	1	0	0	0	3068	565	20	2	1947	2	CDC27	17	45234625	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	300	45234625	35960585	120	45281											
SDK2	54549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	71375627	71375627	+	Silent	SNP	C	C	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	71375627	C	A	71375627	2	1	714	1	0	0	0	0	0	0	0	1	13982	726	26	4		4	SDK2	17	71375627	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	26141002	71375627	9819583	121	45282											
NPTX1	4884	broad.mit.edu	37	17	78449424	78449425	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	78449425	-	G	78449424	7	5	714	1	0	1	1	0	0	0	0	0	10609	652	23	0	775	0	NPTX1	17	78449424	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	7073797	78449424	2745786	122	45283											
MADCAM1	8174	mdanderson.org	37	19	501714	501714	+	Missense_Mutation	SNP	C	C	A	rs78071082	bycluster;byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	501714	C	A	501714	3	1	714	1	0	0	0	0	1	0	0	0	9158	652	23	4	727	4	MADCAM1	19	501714	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		501714	58627269	123	45284											
C3	718	broad.mit.edu	37	19	6679165	6679166	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	6679166	-	C	6679165	7	5	714	1	0	1	1	0	0	0	0	0	2206	1667	58	0	406	0	C3	19	6679165	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	6177451	6679165	52449818	124	45285											
PODNL1	79883	broad.mit.edu	37	19	14044085	14044087	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	14044087	CCC	-	14044085	7	5	714	1	0	1	0	1	0	0	0	0	12186	842	30	0	570	0	PODNL1	19	14044085	In_Frame_Del	DEL	CCC	TCGA-KO-8404-01A-11D-2310-10	7364920	14044085	45084898	125	45286											
GTPBP3	84705	mdanderson.org	37	19	17448961	17448961	+	Silent	SNP	A	A	C	rs1864112	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	17448961	A	C	17448961	2	2	714	1	0	0	0	0	0	0	0	1	6888	175	7	5		5	GTPBP3	19	17448961	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	3404876	17448961	41680022	126	45287											
RPL18A	6142	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	19	17972198	17972198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	17972198	G	A	17972198	3	1	714	1	0	0	0	0	1	0	0	0	13578	1145	40	1	121	1	RPL18A	19	17972198	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	523237	17972198	41156785	127	45288											
LRRC25	126364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	18507174	18507174	+	Silent	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	18507174	C	T	18507174	2	4	714	1	0	0	0	0	0	0	0	1	8987	796	28	2		2	LRRC25	19	18507174	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	534976	18507174	40621809	128	45289											
ZNF626	199777	mdanderson.org	37	19	20807270	20807270	+	Silent	SNP	A	A	G	rs4809070	bycluster;byfrequency;by2hit2allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	20807270	A	G	20807270	2	3	714	1	0	0	0	0	0	0	0	1	18062	446	16	3		3	ZNF626	19	20807270	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	2300096	20807270	38321713	129	45290											
UQCRFS1	7386	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	29698692	29698692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	29698692	C	G	29698692	3	3	714	1	0	0	0	0	1	0	0	0	17033	622	22	4	240	4	UQCRFS1	19	29698692	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	8891422	29698692	29430291	130	45291											
CYP2F1	1572	mdanderson.org	37	19	41633809	41633809	+	Missense_Mutation	SNP	G	G	A	rs139951793	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	41633809	G	A	41633809	3	1	714	1	0	0	0	0	1	0	0	0	4173	1087	38	1	1332	1	CYP2F1	19	41633809	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	11935117	41633809	17495174	131	45292											
ZNF285	26974	mdanderson.org	37	19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T	rs77661661		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	44891043	G	T	44891043	3	4	714	1	0	0	0	0	1	0	0	0	17834	1348	47	4	412	4	ZNF285	19	44891043	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	3257234	44891043	14237940	132	45293											
LMTK3	114783	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	49001439	49001439	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	A	49001439	C	A	49001439	4	1	714	1	0	0	0	0	0	1	0	0	8867	864	30	4	1515	4	LMTK3	19	49001439	Nonsense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	4110396	49001439	10127544	133	45294											
ZNF468	90333	mdanderson.org	37	19	53352380	53352380	+	Silent	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	53352380	C	T	53352380	2	4	714	1	0	0	0	0	0	0	0	1	17940	622	22	2		2	ZNF468	19	53352380	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	4350941	53352380	5776603	134	45295											
KIR2DL1	3802	mdanderson.org	37	19	55286795	55286795	+	Silent	SNP	T	T	C	rs200104747		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	55286795	T	C	55286795	2	2	714	1	0	0	0	0	0	0	0	1	8323	1567	55	3		3	KIR2DL1	19	55286795	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10	1934415	55286795	3842188	135	45296											
SLC27A5	10998	broad.mit.edu	37	19	59022739	59022740	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	59022740	-	C	59022739	7	5	714	1	0	1	1	0	0	0	0	0	14542	1203	42	0	1528	0	SLC27A5	19	59022739	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	3735944	59022739	106244	136	45297											
FAM83C	128876	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	33874426	33874426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	33874426	C	T	33874426	3	4	714	1	0	0	0	0	1	0	0	0	5642	652	23	1	91	1	FAM83C	20	33874426	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		33874426	29151094	137	45298											
LPIN3	64900	broad.mit.edu	37	20	39984606	39984608	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	39984608	TTG	-	39984606	7	5	714	1	0	1	0	1	0	0	0	0	8927	1606	56	0	1785	0	LPIN3	20	39984606	In_Frame_Del	DEL	TTG	TCGA-KO-8404-01A-11D-2310-10	6110180	39984606	23040914	138	45299											
CTCFL	140690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	56087702	56087702	+	Silent	SNP	A	A	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	56087702	A	G	56087702	2	3	714	1	0	0	0	0	0	0	0	1	4003	291	11	3		3	CTCFL	20	56087702	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	16103096	56087702	6937818	139	45300											
KCNQ2	3785	broad.mit.edu	37	20	62076054	62076055	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	62076055	-	C	62076054	7	5	714	1	0	1	1	0	0	0	0	0	8090	1306	46	0	2090	0	KCNQ2	20	62076054	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	5988352	62076054	949466	140	45301											
OR11H1	81061	mdanderson.org	37	22	16449605	16449605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	16449605	T	C	16449605	3	2	714	1	0	0	0	0	1	0	0	0	10933	1667	58	3	782	3	OR11H1	22	16449605	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10		16449605	34854961	141	45302											
RIMBP3	85376	broad.mit.edu	37	22	20458628	20458629	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	G	20458629	-	G	20458628	7	5	714	1	0	1	1	0	0	0	0	0	13377	1812	63	0	2249	0	RIMBP3	22	20458628	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	4009023	20458628	30845938	142	45303											
KDELR3	11015	hgsc.bcm.edu	37	22	38877304	38877304	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	38877304	A	-	38877304	7	5	714	1	0	1	0	1	0	0	0	0	8128	217	8	0	453	0	KDELR3	22	38877304	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	18418676	38877304	12427262	143	45304	643	2									
KDELR3	11015	bcgsc.ca	37	22	38877305	38877305	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	38877305	A	-	38877305	7	5	714	1	0	1	0	1	0	0	0	0	8128	1406	49	0	454	0	KDELR3	22	38877305	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	1	38877305	12427261	144	45305	643	2									
RPS6KA3	6197	broad.mit.edu	37	X	20187576	20187576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	20187576	C	T	20187576	3	4	714	1	0	0	0	0	1	0	0	0	13665	922	32	2	863	2	RPS6KA3	23	20187576	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		20187576	135082984	145	45306											
FAM47B	170062	broad.mit.edu	37	X	34961067	34961068	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	34961068	-	C	34961067	7	5	714	1	0	1	1	0	0	0	0	0	5577	1783	62	0	121	0	FAM47B	23	34961067	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	14773491	34961067	120309493	146	45307											
HUWE1	10075	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	53586462	53586462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	T	53586462	G	T	53586462	3	4	714	1	0	0	0	0	1	0	0	0	7468	1000	35	4	5468	4	HUWE1	23	53586462	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	18625395	53586462	101684098	147	45308											
RAB40A	142684	broad.mit.edu	37	X	102755468	102755469	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	C	102755469	-	C	102755468	7	5	714	1	0	1	1	0	0	0	0	0	12952	1328	46	0	620	0	RAB40A	23	102755468	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	49169006	102755468	52515092	148	45309											
USP26	83844	broad.mit.edu	37	X	132161205	132161205	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0	-	132161205	A	-	132161205	7	5	714	1	0	1	0	1	0	0	0	0	17069	359	13	0	1700	0	USP26	23	132161205	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	29405737	132161205	23109355	149	45310											
ENO1	2023	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	8923329	8923329	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	8923329	T	A	8923329	3	1	715	1	0	0	0	0	1	0	0	0	5123	1464	51	5	175	5	ENO1	1	8923329	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		8923329	240327292	1	45311											
TMEM201	199953	ucsc.edu	37	1	9673104	9673104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	9673104	T	C	9673104	3	2	715	1	0	0	0	0	1	0	0	0	16138	1580	55	3	2025	3	TMEM201	1	9673104	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	749775	9673104	239577517	2	45312											
FAM131C	348487	broad.mit.edu;mdanderson.org	37	1	16386095	16386095	+	Silent	SNP	G	G	A	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	16386095	G	A	16386095	2	1	715	1	0	0	0	0	0	0	0	1	5445	1045	37	1		1	FAM131C	1	16386095	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	6712991	16386095	232864526	3	45313											
NPHS2	7827	mdanderson.org	37	1	179544941	179544941	+	Missense_Mutation	SNP	G	G	A	rs74315344		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	179544941	G	A	179544941	3	1	715	1	0	0	0	0	1	0	0	0	10590	1116	39	1	1124	1	NPHS2	1	179544941	Missense_Mutation	SNP	G	TCGA-KO-8405-01A-11D-2310-10	163158846	179544941	69705680	4	45314											
CHIT1	1118	bcgsc.ca	37	1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T	rs201320385	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	T	203186950	C	T	203186950	4	4	715	1	0	0	0	0	0	1	0	0	3348	595	21	2	335	2	CHIT1	1	203186950	Nonsense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	23642009	203186950	46063671	5	45315											
SRGAP2	23380	broad.mit.edu	37	1	206516357	206516357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	-	206516357	A	-	206516357	7	5	715	1	0	1	0	1	0	0	0	0	15158	369	13	0	160	0	SRGAP2	1	206516357	Frame_Shift_Del	DEL	A	TCGA-KO-8405-01A-11D-2310-10	3329407	206516357	42734264	6	45316											
OR2T33	391195	mdanderson.org	37	1	248436807	248436807	+	Missense_Mutation	SNP	T	T	A	rs74534795	bycluster	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	248436807	T	A	248436807	3	1	715	1	0	0	0	0	1	0	0	0	11031	1696	59	5	655	5	OR2T33	1	248436807	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	41920450	248436807	813814	7	45317											
MBOAT2	129642	broad.mit.edu	37	2	9013240	9013240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	9013240	A	G	9013240	3	3	715	1	0	0	0	0	1	0	0	0	9364	420	15	3	705	3	MBOAT2	2	9013240	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10		9013240	234186133	8	45318											
NPAS2	4862	broad.mit.edu	37	2	101607324	101607324	+	Missense_Mutation	SNP	C	C	T	rs141762291		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	T	101607324	C	T	101607324	3	4	715	1	0	0	0	0	1	0	0	0	10570	527	19	1	2171	1	NPAS2	2	101607324	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	92594084	101607324	141592049	9	45319											
CBWD2	150472	broad.mit.edu	37	2	114201378	114201379	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	114201379	-	G	114201378	7	5	715	1	0	1	1	0	0	0	0	0	2715	69	3	0	286	0	CBWD2	2	114201378	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10	12594054	114201378	128997995	10	45320											
HS6ST1	9394	mdanderson.org	37	2	129025928	129025928	+	Silent	SNP	G	G	A	rs34162993		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	129025928	G	A	129025928	2	1	715	1	0	0	0	0	0	0	0	1	7377	1140	40	1		1	HS6ST1	2	129025928	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	14824550	129025928	114173445	11	45321											
ADAM23	8745	broad.mit.edu;bcgsc.ca	37	2	207459582	207459582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	207459582	A	G	207459582	3	3	715	1	0	0	0	0	1	0	0	0	245	304	11	3	2290	3	ADAM23	2	207459582	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	78433654	207459582	35739791	12	45322											
CCR2	729230	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	3	46399846	46399846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	46399846	C	A	46399846	3	1	715	1	0	0	0	0	1	0	0	0	2943	564	20	4	830	4	CCR2	3	46399846	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10		46399846	151622584	13	45323											
MUC4	4585	mdanderson.org	37	3	195509641	195509641	+	Missense_Mutation	SNP	A	A	G	rs28414759		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	195509641	A	G	195509641	3	3	715	1	0	0	0	0	1	0	0	0	9985	391	14	3		3	MUC4	3	195509641	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	149109795	195509641	2512789	14	45324											
MUC4	4585	bcgsc.ca	37	3	195511358	195511358	+	Missense_Mutation	SNP	C	C	G	rs77614482		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	195511358	C	G	195511358	3	3	715	1	0	0	0	0	1	0	0	0	9985	826	29	4		4	MUC4	3	195511358	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	1717	195511358	2511072	15	45325											
OTOP1	133060	ucsc.edu	37	4	4228424	4228425	+	Missense_Mutation	DNP	TT	TT	CC	rs78657691		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	CC	4228425	TT	CC	4228424	3	2	715	1	0	0	0	0	1	0	0	0	11312	1722	60	3	1694	3	OTOP1	4	4228424	Missense_Mutation	DNP	TT	TCGA-KO-8405-01A-11D-2310-10		4228424	186925852	16	45326											
FBXW7	55294	hgsc.bcm.edu	37	4	153247276	153247276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	153247276	T	C	153247276	3	2	715	1	0	0	0	0	1	0	0	0	5776	1406	49	3	609	3	FBXW7	4	153247276	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	149018852	153247276	37907000	17	45327											
PTCD2	79810	ucsc.edu	37	5	71638808	71638808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	71638808	T	C	71638808	3	2	715	1	0	0	0	0	1	0	0	0	12738	1696	59	3	803	3	PTCD2	5	71638808	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		71638808	109276452	18	45328											
TIMD4	91937	broad.mit.edu	37	5	156378731	156378733	+	In_Frame_Del	DEL	GGT	GGT	-	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	-	156378733	GGT	-	156378731	7	5	715	1	0	1	0	1	0	0	0	0	15915	1219	43	0	693	0	TIMD4	5	156378731	In_Frame_Del	DEL	GGT	TCGA-KO-8405-01A-11D-2310-10	84739923	156378731	24536529	19	45329											
NRSN1	140767	ucsc.edu	37	6	24146152	24146152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	24146152	T	C	24146152	3	2	715	1	0	0	0	0	1	0	0	0	10669	1667	58	3	572	3	NRSN1	6	24146152	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		24146152	146968915	20	45330											
HLA-A	3105	mdanderson.org	37	6	29910801	29910801	+	Missense_Mutation	SNP	C	C	A	rs1136692	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	29910801	C	A	29910801	3	1	715	1	0	0	0	0	1	0	0	0	7202	739	26	4	347	4	HLA-A	6	29910801	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	5764649	29910801	141204266	21	45331											
RNF39	80352	mdanderson.org	37	6	30043171	30043171	+	Silent	SNP	G	G	C	rs9261304		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	30043171	G	C	30043171	2	2	715	1	0	0	0	0	0	0	0	1	13504	987	35	4		4	RNF39	6	30043171	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	132370	30043171	141071896	22	45332											
HLA-B	3106	mdanderson.org	37	6	31324595	31324595	+	Silent	SNP	C	C	G	rs144857500	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	31324595	C	G	31324595	2	3	715	1	0	0	0	0	0	0	0	1	7203	755	27	4		4	HLA-B	6	31324595	Silent	SNP	C	TCGA-KO-8405-01A-11D-2310-10	1281424	31324595	139790472	23	45333											
HSP90AB1	3326	mdanderson.org	37	6	44221262	44221262	+	Missense_Mutation	SNP	A	A	G	rs201760495	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	44221262	A	G	44221262	3	3	715	1	0	0	0	0	1	0	0	0	7409	101	4	3	2144	3	HSP90AB1	6	44221262	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	12896667	44221262	126893805	24	45334											
ROS1	6098	bcgsc.ca	37	6	117718246	117718246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	117718246	T	C	117718246	3	2	715	1	0	0	0	0	1	0	0	0	13544	1551	54	3	6580	3	ROS1	6	117718246	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	73496984	117718246	53396821	25	45335											
C7orf50	84310	ucsc.edu;bcgsc.ca	37	7	1049662	1049662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	1049662	G	A	1049662	3	1	715	1	0	0	0	0	1	0	0	0	2401	1086	38	1	349	1	C7orf50	7	1049662	Missense_Mutation	SNP	G	TCGA-KO-8405-01A-11D-2310-10		1049662	158089001	26	45336											
VPS37D	155382	ucsc.edu	37	7	73085354	73085354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	73085354	A	G	73085354	3	3	715	1	0	0	0	0	1	0	0	0	17220	304	11	3	418	3	VPS37D	7	73085354	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	72035692	73085354	86053309	27	45337											
PRSS3	5646	mdanderson.org	37	9	33796734	33796734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	33796734	C	A	33796734	3	1	715	1	0	0	0	0	1	0	0	0	12632	855	30	4	355	4	PRSS3	9	33796734	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10		33796734	107416697	28	45338											
SARDH	1757	broad.mit.edu;bcgsc.ca	37	9	136550314	136550314	+	Splice_Site	SNP	C	C	A	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	136550314	C	A	136550314	5	1	715	1	0	0	0	0	0	0	1	0	13854	521	18	4	612	4	SARDH	9	136550314	Splice_Site	SNP	C	TCGA-KO-8405-01A-11D-2310-10	102753580	136550314	4663117	29	45339											
MAN1B1	11253	broad.mit.edu	37	9	139990718	139990719	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	139990719	-	C	139990718	7	5	715	1	0	1	1	0	0	0	0	0	9219	146	6	0	509	0	MAN1B1	9	139990718	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10	3440404	139990718	1222713	30	45340											
IDE	3416	broad.mit.edu	37	10	94223677	94223677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	94223677	A	G	94223677	3	3	715	1	0	0	0	0	1	0	0	0	7500	420	15	3	507	3	IDE	10	94223677	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10		94223677	41311070	31	45341											
MUC5B	727897	broad.mit.edu	37	11	1263525	1263526	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	1263526	-	G	1263525	7	5	715	1	0	1	1	0	0	0	0	0	9986	755	27	0	5546	0	MUC5B	11	1263525	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10		1263525	133742991	32	45342											
OR4A5	81318	mdanderson.org	37	11	51412022	51412022	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	51412022	C	G	51412022	3	3	715	1	0	0	0	0	1	0	0	0	11050	478	17	4	577	4	OR4A5	11	51412022	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	50148497	51412022	83594494	33	45343											
OR4A16	81327	mdanderson.org	37	11	55111086	55111086	+	Missense_Mutation	SNP	T	T	A	rs78354885	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	55111086	T	A	55111086	3	1	715	1	0	0	0	0	1	0	0	0	11048	1580	55	5	412	5	OR4A16	11	55111086	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	3699064	55111086	79895430	34	45344											
OR1S2	219958	mdanderson.org	37	11	57970980	57970980	+	Missense_Mutation	SNP	A	A	G	rs34249289	bycluster;alternate_allele	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	57970980	A	G	57970980	3	3	715	1	0	0	0	0	1	0	0	0	10980	391	14	3	306	3	OR1S2	11	57970980	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	2859894	57970980	77035536	35	45345											
ATG2A	23130	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	11	64664287	64664287	+	Silent	SNP	G	G	A	rs180755321	by1000genomes	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	64664287	G	A	64664287	2	1	715	1	0	0	0	0	0	0	0	1	1093	1368	48	2		2	ATG2A	11	64664287	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	6693307	64664287	70342229	36	45346											
FOLR2	2350	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	71932013	71932013	+	Missense_Mutation	SNP	G	G	A	rs74853303	bycluster;byfrequency;by1000genomes	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	71932013	G	A	71932013	3	1	715	1	0	0	0	0	1	0	0	0	5989	1116	39	1	256	1	FOLR2	11	71932013	Missense_Mutation	SNP	G	TCGA-KO-8405-01A-11D-2310-10	7267726	71932013	63074503	37	45347											
CSDA	8531	mdanderson.org	37	12	10875488	10875488	+	Missense_Mutation	SNP	T	T	C	rs1126501		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	10875488	T	C	10875488	3	2	715	1	0	0	0	0	1	0	0	0	3929	1696	59	3	931	3	CSDA	12	10875488	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		10875488	122976407	38	45348											
HOXC9	3225	mdanderson.org	37	12	54394497	54394497	+	Silent	SNP	C	C	T	rs2241820	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	T	54394497	C	T	54394497	2	4	715	1	0	0	0	0	0	0	0	1	7324	639	23	1		1	HOXC9	12	54394497	Silent	SNP	C	TCGA-KO-8405-01A-11D-2310-10	43519009	54394497	79457398	39	45349											
ZFP106	64397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	42720229	42720229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	42720229	G	A	42720229	3	1	715	1	0	0	0	0	1	0	0	0	17649	1261	44	2	767	2	ZFP106	15	42720229	Missense_Mutation	SNP	G	TCGA-KO-8405-01A-11D-2310-10		42720229	59811163	40	45350											
WDR90	197335	mdanderson.org	37	16	705360	705360	+	Missense_Mutation	SNP	T	T	C	rs3803697	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	705360	T	C	705360	3	2	715	1	0	0	0	0	1	0	0	0	17349	1696	59	3	1668	3	WDR90	16	705360	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		705360	89649393	41	45351											
ZNF205	7755	broad.mit.edu	37	16	3169758	3169759	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	3169759	-	C	3169758	7	5	715	1	0	1	1	0	0	0	0	0	17776	1319	46	0	1119	0	ZNF205	16	3169758	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10	2464398	3169758	87184995	42	45352											
CREBBP	1387	broad.mit.edu	37	16	3817815	3817815	+	Silent	SNP	T	T	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	3817815	T	C	3817815	2	2	715	1	0	0	0	0	0	0	0	1	3863	1722	60	3		3	CREBBP	16	3817815	Silent	SNP	T	TCGA-KO-8405-01A-11D-2310-10	648057	3817815	86536938	43	45353											
NOB1	28987	bcgsc.ca	37	16	69783533	69783533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	T	69783533	C	T	69783533	3	4	715	1	0	0	0	0	1	0	0	0	10518	521	18	2	934	2	NOB1	16	69783533	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	65965718	69783533	20571220	44	45354											
ODF4	146852	hgsc.bcm.edu;bcgsc.ca	37	17	8249105	8249105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	8249105	A	G	8249105	3	3	715	1	0	0	0	0	1	0	0	0	10840	333	12	3	719	3	ODF4	17	8249105	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10		8249105	72946105	45	45355											
PLEKHM1	9842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	43523003	43523003	+	Silent	SNP	C	C	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	43523003	C	G	43523003	2	3	715	1	0	0	0	0	0	0	0	1	12087	813	29	4		4	PLEKHM1	17	43523003	Silent	SNP	C	TCGA-KO-8405-01A-11D-2310-10	35273898	43523003	37672207	46	45356											
EPN3	55040	mdanderson.org	37	17	48619290	48619290	+	Silent	SNP	G	G	A	rs112657244	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	48619290	G	A	48619290	2	1	715	1	0	0	0	0	0	0	0	1	5189	1103	39	1		1	EPN3	17	48619290	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	5096287	48619290	32575920	47	45357											
SSTR2	6752	hgsc.bcm.edu	37	17	71166135	71166135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	71166135	T	C	71166135	3	2	715	1	0	0	0	0	1	0	0	0	15210	1609	56	3	679	3	SSTR2	17	71166135	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	22546845	71166135	10029075	48	45358											
PRKCSH	5589	hgsc.bcm.edu;mdanderson.org	37	19	11558367	11558367	+	Silent	SNP	G	G	A	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	11558367	G	A	11558367	2	1	715	1	0	0	0	0	0	0	0	1	12526	991	35	2		2	PRKCSH	19	11558367	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10		11558367	47570616	49	45359											
ZNF793	390927	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	38028153	38028153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	G	38028153	C	G	38028153	3	3	715	1	0	0	0	0	1	0	0	0	18177	507	18	4	607	4	ZNF793	19	38028153	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	26469786	38028153	21100830	50	45360											
CNTD2	79935	broad.mit.edu	37	19	40730638	40730639	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	C	40730639	-	C	40730638	7	5	715	1	0	1	1	0	0	0	0	0	3638	1161	41	0	591	0	CNTD2	19	40730638	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10	2702485	40730638	18398345	51	45361											
ZNF233	353355	broad.mit.edu	37	19	44778459	44778459	+	Missense_Mutation	SNP	C	C	T	rs200116301		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	T	44778459	C	T	44778459	3	4	715	1	0	0	0	0	1	0	0	0	17798	893	31	1	1660	1	ZNF233	19	44778459	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	4047821	44778459	14350524	52	45362											
LILRB3	11025	mdanderson.org	37	19	54724407	54724407	+	Missense_Mutation	SNP	C	C	T	rs1132608		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	T	54724407	C	T	54724407	3	4	715	1	0	0	0	0	1	0	0	0	8799	536	19	1	681	1	LILRB3	19	54724407	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	9945948	54724407	4404576	53	45363	644	2									
LILRB3	11025	mdanderson.org	37	19	54724411	54724411	+	Silent	SNP	C	C	T	rs1132607		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	T	54724411	C	T	54724411	2	4	715	1	0	0	0	0	0	0	0	1	8799	796	28	2		2	LILRB3	19	54724411	Silent	SNP	C	TCGA-KO-8405-01A-11D-2310-10	4	54724411	4404572	54	45364	644	2									
MAP1LC3A	84557	broad.mit.edu	37	20	33147203	33147203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	T	33147203	C	T	33147203	3	4	715	1	0	0	0	0	1	0	0	0	9237	507	18	2	215	2	MAP1LC3A	20	33147203	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10		33147203	29878317	55	45365											
CXorf23	256643	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	19983778	19983778	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	19983778	T	A	19983778	4	1	715	1	0	0	0	0	0	1	0	0	4105	1617	56	5	1426	5	CXorf23	23	19983778	Nonsense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		19983778	135286782	56	45366											
RLIM	51132	mdanderson.org	37	X	73811737	73811737	+	Silent	SNP	T	T	A	rs113198776		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	A	73811737	T	A	73811737	2	1	715	1	0	0	0	0	0	0	0	1	13403	1799	63	5		5	RLIM	23	73811737	Silent	SNP	T	TCGA-KO-8405-01A-11D-2310-10	53827959	73811737	81458823	57	45367											
MAGEC1	9947	mdanderson.org	37	X	140994010	140994010	+	Missense_Mutation	SNP	C	C	T	rs146798989	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5	T	140994010	C	T	140994010	3	4	715	1	0	0	0	0	1	0	0	0	9187	623	22	2	826	2	MAGEC1	23	140994010	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	67182273	140994010	14276550	58	45368											
NUDC	10726	hgsc.bcm.edu	37	1	27268032	27268033	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	GGG	27268033	-	GGG	27268032	7	5	716	1	0	1	1	0	0	0	0	0	10728	759	27	0	254	0	NUDC	1	27268032	In_Frame_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10		27268032	221982589	1	45369											
TOE1	114034	broad.mit.edu	37	1	45808598	45808598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	45808598	A	G	45808598	3	3	716	1	0	0	0	0	1	0	0	0	16361	275	10	3	862	3	TOE1	1	45808598	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	18540566	45808598	203442023	2	45370											
XCL1	6375	broad.mit.edu	37	1	168550330	168550330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	168550330	C	A	168550330	3	1	716	1	0	0	0	0	1	0	0	0	17435	479	17	4	227	4	XCL1	1	168550330	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	122741732	168550330	80700291	3	45371											
C1orf106	55765	mdanderson.org	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	200880978	C	T	200880978	3	4	716	1	0	0	0	0	1	0	0	0	1982	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	32330648	200880978	48369643	4	45372											
CD55	1604	bcgsc.ca	37	1	207510059	207510059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	207510059	T	C	207510059	3	2	716	1	0	0	0	0	1	0	0	0	3026	1667	58	3	901	3	CD55	1	207510059	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	6629081	207510059	41740562	5	45373											
MTHFD2	10797	hgsc.bcm.edu;bcgsc.ca	37	2	74438938	74438938	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	74438938	A	T	74438938	3	4	716	1	0	0	0	0	1	0	0	0	9936	301	11	5	860	5	MTHFD2	2	74438938	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10		74438938	168760435	6	45374											
ATF2	1386	ucsc.edu	37	2	175986170	175986170	+	Splice_Site	SNP	A	A	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	175986170	A	C	175986170	5	2	716	1	0	0	0	0	0	0	1	0	1080	57	2	5	1356	5	ATF2	2	175986170	Splice_Site	SNP	A	TCGA-KO-8406-01A-11D-2310-10	101547232	175986170	67213203	7	45375											
COL6A3	1293	mdanderson.org;bcgsc.ca	37	2	238269781	238269781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	238269781	C	T	238269781	3	4	716	1	0	0	0	0	1	0	0	0	3703	594	21	2	3456	2	COL6A3	2	238269781	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	62283611	238269781	4929592	8	45376											
KIAA2018	205717	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	113375013	113375013	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	113375013	A	T	113375013	3	4	716	1	0	0	0	0	1	0	0	0	8275	304	11	5	1225	5	KIAA2018	3	113375013	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10		113375013	84647417	9	45377											
CCDC37	348807	broad.mit.edu	37	3	126142182	126142183	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	126142183	-	C	126142182	7	5	716	1	0	1	1	0	0	0	0	0	2811	1435	50	0	1139	0	CCDC37	3	126142182	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	12767169	126142182	71880248	10	45378											
GFM1	85476	broad.mit.edu	37	3	158362472	158362473	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	158362473	-	C	158362472	7	5	716	1	0	1	1	0	0	0	0	0	6348	1203	42	0	51	0	GFM1	3	158362472	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	32220290	158362472	39659958	11	45379											
PPP1R2	5504	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	195256683	195256683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	195256683	C	T	195256683	3	4	716	1	0	0	0	0	1	0	0	0	12380	855	30	2	495	2	PPP1R2	3	195256683	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	36894211	195256683	2765747	12	45380											
MUC4	4585	mdanderson.org	37	3	195509125	195509125	+	Missense_Mutation	SNP	C	C	A	rs71637183	alternate_allele	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	195509125	C	A	195509125	3	1	716	1	0	0	0	0	1	0	0	0	9985	797	28	4		4	MUC4	3	195509125	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	252442	195509125	2513305	13	45381			1	138		3	3	4682	N	T_C	6.380946e-05
MUC4	4585	mdanderson.org	37	3	195509586	195509586	+	Silent	SNP	T	T	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	195509586	T	G	195509586	2	3	716	1	0	0	0	0	0	0	0	1	9985	1567	55	5		5	MUC4	3	195509586	Silent	SNP	T	TCGA-KO-8406-01A-11D-2310-10	461	195509586	2512844	14	45382			1	138		3	3	4682	N	T_C	6.380946e-05
MUC4	4585	mdanderson.org	37	3	195513806	195513806	+	Missense_Mutation	SNP	C	C	G	rs199976859	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	195513806	C	G	195513806	3	3	716	1	0	0	0	0	1	0	0	0	9985	826	29	4		4	MUC4	3	195513806	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	4220	195513806	2508624	15	45383			1	138		3	3	4682	N	T_C	6.380946e-05
ZNF732	654254	mdanderson.org	37	4	289864	289864	+	Silent	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	289864	C	T	289864	2	4	716	1	0	0	0	0	0	0	0	1	18135	477	17	2		2	ZNF732	4	289864	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10		289864	190864412	16	45384			2	139		5	3	65	N	G_C	1.1832e-08
ZNF732	654254	mdanderson.org	37	4	289878	289878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	289878	C	A	289878	3	1	716	1	0	0	0	0	1	0	0	0	18135	710	25	4	1699	4	ZNF732	4	289878	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	14	289878	190864398	17	45385	645	3	2	139		5	3	65	N	G_C	1.1832e-08
ZNF732	654254	mdanderson.org	37	4	289881	289881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	289881	G	T	289881	3	4	716	1	0	0	0	0	1	0	0	0	18135	1232	43	4	1702	4	ZNF732	4	289881	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	3	289881	190864395	18	45386	645	3	2	139		5	3	65	N	G_C	1.1832e-08
ZNF732	654254	mdanderson.org	37	4	289888	289888	+	Silent	SNP	G	G	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	289888	G	A	289888	2	1	716	1	0	0	0	0	0	0	0	1	18135	1195	42	2		2	ZNF732	4	289888	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10	7	289888	190864388	19	45387	645	3	2	139		5	3	65	N	G_C	1.1832e-08
ZNF732	654254	mdanderson.org	37	4	289928	289928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	289928	C	T	289928	3	4	716	1	0	0	0	0	1	0	0	0	18135	681	24	2	1749	2	ZNF732	4	289928	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	40	289928	190864348	20	45388			2	139		5	3	65	N	G_C	1.1832e-08
HNRPDL	9987	broad.mit.edu	37	4	83350758	83350759	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	83350759	-	C	83350758	7	5	716	1	0	1	1	0	0	0	0	0	7283	1464	51	0	1204	0	HNRPDL	4	83350758	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	83060830	83350758	107803518	21	45389	646	2									
HNRPDL	9987	broad.mit.edu	37	4	83350764	83350764	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	-	83350764	A	-	83350764	7	5	716	1	0	1	0	1	0	0	0	0	7283	304	11	0	1210	0	HNRPDL	4	83350764	Frame_Shift_Del	DEL	A	TCGA-KO-8406-01A-11D-2310-10	6	83350764	107803512	22	45390	646	2									
NAA15	80155	mdanderson.org	37	4	140272727	140272727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	140272727	T	C	140272727	3	2	716	1	0	0	0	0	1	0	0	0	10125	1609	56	3	1010	3	NAA15	4	140272727	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	56921963	140272727	50881549	23	45391											
HAPLN1	1404	broad.mit.edu	37	5	82940353	82940354	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	82940354	-	C	82940353	7	5	716	1	0	1	1	0	0	0	0	0	6961	962	34	0	468	0	HAPLN1	5	82940353	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10		82940353	97974907	24	45392											
LECT2	3950	broad.mit.edu	37	5	135283165	135283165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	135283165	T	C	135283165	3	2	716	1	0	0	0	0	1	0	0	0	8720	1638	57	3	148	3	LECT2	5	135283165	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	52342812	135283165	45632095	25	45393											
MDN1	23195	broad.mit.edu;mdanderson.org;bcgsc.ca	37	6	90353740	90353740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	90353740	G	T	90353740	3	4	716	1	0	0	0	0	1	0	0	0	9422	1203	42	4	19	4	MDN1	6	90353740	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10		90353740	80761327	26	45394											
REV3L	5980	hgsc.bcm.edu	37	6	111665249	111665249	+	Splice_Site	DEL	A	A	-	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	-	111665249	A	-	111665249	8	5	716	1	0	1	0	1	0	0	1	0	13253	377	13	0		0	REV3L	6	111665249	Splice_Site	DEL	A	TCGA-KO-8406-01A-11D-2310-10	21311509	111665249	59449818	27	45395											
ECT2L	345930	broad.mit.edu	37	6	139164271	139164271	+	Silent	SNP	G	G	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	139164271	G	A	139164271	2	1	716	1	0	0	0	0	0	0	0	1	4904	1074	38	1		1	ECT2L	6	139164271	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10	27499022	139164271	31950796	28	45396											
NCF1	653361	mdanderson.org	37	7	74193718	74193718	+	Silent	SNP	C	C	T	rs79234723		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	74193718	C	T	74193718	2	4	716	1	0	0	0	0	0	0	0	1	10223	871	31	1		1	NCF1	7	74193718	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10		74193718	84944945	29	45397											
TRRAP	8295	broad.mit.edu	37	7	98522828	98522828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	98522828	G	T	98522828	3	4	716	1	0	0	0	0	1	0	0	0	16613	1203	42	4	2999	4	TRRAP	7	98522828	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	24329110	98522828	60615835	30	45398											
ATP6V0E2	155066	mdanderson.org	37	7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	rs79377053		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	149571095	G	A	149571095	3	1	716	1	0	0	0	0	1	0	0	0	1176	1087	38	1	90	1	ATP6V0E2	7	149571095	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	51048267	149571095	9567568	31	45399											
MLL3	58508	mdanderson.org	37	7	151945291	151945291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	151945291	G	A	151945291	3	1	716	1	0	0	0	0	1	0	0	0	9629	1000	35	2	12691	2	MLL3	7	151945291	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	2374196	151945291	7193372	32	45400											
EGR3	1960	broad.mit.edu	37	8	22548132	22548132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	22548132	G	T	22548132	3	4	716	1	0	0	0	0	1	0	0	0	4975	1087	38	4	149	4	EGR3	8	22548132	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10		22548132	123815890	33	45401											
PLEC	5339	mdanderson.org	37	8	144997656	144997656	+	Silent	SNP	C	C	T	rs7016416	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	144997656	C	T	144997656	2	4	716	1	0	0	0	0	0	0	0	1	12059	755	27	1		1	PLEC	8	144997656	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10	122449524	144997656	1366366	34	45402											
FOXD4	2298	broad.mit.edu	37	9	117398	117400	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	-	117400	GGC	-	117398	7	5	716	1	0	1	0	1	0	0	0	0	6006	1348	47	0	601	0	FOXD4	9	117398	In_Frame_Del	DEL	GGC	TCGA-KO-8406-01A-11D-2310-10		117398	141096033	35	45403											
MED27	9442	mdanderson.org	37	9	134735980	134735980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	134735980	G	A	134735980	3	1	716	1	0	0	0	0	1	0	0	0	9452	1116	39	1	58	1	MED27	9	134735980	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	134618582	134735980	6477451	36	45404											
LCN1	3933	broad.mit.edu	37	9	138415126	138415127	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	138415127	-	G	138415126	7	5	716	1	0	1	1	0	0	0	0	0	8687	535	19	0	280	0	LCN1	9	138415126	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	3679146	138415126	2798305	37	45405											
KCNT1	57582	hgsc.bcm.edu	37	9	138678160	138678160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	138678160	C	T	138678160	3	4	716	1	0	0	0	0	1	0	0	0	8098	623	22	2	3409	2	KCNT1	9	138678160	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	263034	138678160	2535271	38	45406											
CARD9	64170	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	9	139262146	139262146	+	Silent	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	139262146	C	T	139262146	2	4	716	1	0	0	0	0	0	0	0	1	2654	755	27	1		1	CARD9	9	139262146	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10	583986	139262146	1951285	39	45407											
MUC2	4583	mdanderson.org	37	11	1092860	1092860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	1092860	C	T	1092860	3	4	716	1	0	0	0	0	1	0	0	0	9982	536	19	1	4797	1	MUC2	11	1092860	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		1092860	133913656	40	45408			3	140		3	3	495	N	T_C	7.141837e-07
MUC2	4583	mdanderson.org	37	11	1092928	1092928	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	1092928	T	A	1092928	3	1	716	1	0	0	0	0	1	0	0	0	9982	1435	50	5	4865	5	MUC2	11	1092928	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	68	1092928	133913588	41	45409			3	140		3	3	495	N	T_C	7.141837e-07
MUC2	4583	mdanderson.org	37	11	1093354	1093354	+	Missense_Mutation	SNP	T	T	A	rs56290335	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	1093354	T	A	1093354	3	1	716	1	0	0	0	0	1	0	0	0	9982	1551	54	5	5291	5	MUC2	11	1093354	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	426	1093354	133913162	42	45410			3	140		3	3	495	N	T_C	7.141837e-07
FOLH1	2346	bcgsc.ca	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	rs116795343	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	49204779	C	T	49204779	3	4	716	1	0	0	0	0	1	0	0	0	5986	536	19	1	1462	1	FOLH1	11	49204779	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	48111425	49204779	85801737	43	45411											
OR5M9	390162	mdanderson.org	37	11	56230790	56230790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	56230790	G	T	56230790	3	4	716	1	0	0	0	0	1	0	0	0	11184	991	35	4	846	4	OR5M9	11	56230790	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	7026011	56230790	78775726	44	45412											
SLC22A11	55867	hgsc.bcm.edu;mdanderson.org	37	11	64326666	64326666	+	Silent	SNP	C	C	T	rs145210367		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	64326666	C	T	64326666	2	4	716	1	0	0	0	0	0	0	0	1	14455	639	23	1		1	SLC22A11	11	64326666	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10	8095876	64326666	70679850	45	45413											
KLC2	64837	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	66033395	66033395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	66033395	G	A	66033395	3	1	716	1	0	0	0	0	1	0	0	0	8341	1087	38	1	1560	1	KLC2	11	66033395	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	1706729	66033395	68973121	46	45414											
CDK2AP2	10263	broad.mit.edu	37	11	67274865	67274865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	67274865	C	T	67274865	3	4	716	1	0	0	0	0	1	0	0	0	3141	797	28	2	104	2	CDK2AP2	11	67274865	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	1241470	67274865	67731651	47	45415											
FZD4	8322	mdanderson.org	37	11	86662232	86662232	+	Silent	SNP	T	T	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	86662232	T	C	86662232	2	2	716	1	0	0	0	0	0	0	0	1	6139	1548	54	3		3	FZD4	11	86662232	Silent	SNP	T	TCGA-KO-8406-01A-11D-2310-10	19387367	86662232	48344284	48	45416											
SORL1	6653	ucsc.edu	37	11	121323057	121323057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	121323057	G	T	121323057	3	4	716	1	0	0	0	0	1	0	0	0	14947	971	34	4	19	4	SORL1	11	121323057	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	34660825	121323057	13683459	49	45417											
PZP	5858	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	9315213	9315213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	9315213	C	A	9315213	3	1	716	1	0	0	0	0	1	0	0	0	12882	565	20	4	1740	4	PZP	12	9315213	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		9315213	124536682	50	45418											
TAS2R31	259290	mdanderson.org	37	12	11183793	11183793	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	11183793	G	C	11183793	3	2	716	1	0	0	0	0	1	0	0	0	15586	942	33	4	791	4	TAS2R31	12	11183793	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	1868580	11183793	122668102	51	45419			4	141		2	2	17	N	G_A	3.876302e-05
TAS2R31	259290	mdanderson.org	37	12	11183809	11183809	+	Silent	SNP	A	A	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	11183809	A	G	11183809	2	3	716	1	0	0	0	0	0	0	0	1	15586	59	3	3		3	TAS2R31	12	11183809	Silent	SNP	A	TCGA-KO-8406-01A-11D-2310-10	16	11183809	122668086	52	45420			4	141		2	2	17	N	G_A	3.876302e-05
GNS	2799	broad.mit.edu	37	12	65152902	65152902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	65152902	A	G	65152902	3	3	716	1	0	0	0	0	1	0	0	0	6557	304	11	3	1559	3	GNS	12	65152902	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	53969093	65152902	68698993	53	45421											
DCN	1634	broad.mit.edu	37	12	91550949	91550949	+	Silent	SNP	C	C	T	rs147765043	alternate_allele	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	91550949	C	T	91550949	2	4	716	1	0	0	0	0	0	0	0	1	4299	755	27	1		1	DCN	12	91550949	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10	26398047	91550949	42300946	54	45422											
TRAFD1	10906	broad.mit.edu	37	12	112578793	112578794	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	-	112578794	GA	-	112578793	7	5	716	1	0	1	0	1	0	0	0	0	16459	1161	41	0	422	0	TRAFD1	12	112578793	Frame_Shift_Del	DEL	GA	TCGA-KO-8406-01A-11D-2310-10	21027844	112578793	21273102	55	45423											
RNFT2	84900	mdanderson.org	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	117187907	T	C	117187907	2	2	716	1	0	0	0	0	0	0	0	1	13515	1490	52	3		3	RNFT2	12	117187907	Silent	SNP	T	TCGA-KO-8406-01A-11D-2310-10	4609114	117187907	16663988	56	45424											
HNF1A	6927	broad.mit.edu	37	12	121437368	121437369	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	121437369	-	C	121437368	7	5	716	1	0	1	1	0	0	0	0	0	7258	971	34	0	1740	0	HNF1A	12	121437368	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	4249461	121437368	12414527	57	45425											
PSPC1	55269	mdanderson.org	37	13	20279800	20279800	+	Splice_Site	SNP	A	A	G	rs199978034		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	20279800	A	G	20279800	5	3	716	1	0	0	0	0	0	0	1	0	12726	405	14	3	191	3	PSPC1	13	20279800	Splice_Site	SNP	A	TCGA-KO-8406-01A-11D-2310-10		20279800	94890078	58	45426											
IPO5	3843	mdanderson.org	37	13	98670796	98670796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	98670796	A	T	98670796	3	4	716	1	0	0	0	0	1	0	0	0	7803	217	8	5	2822	5	IPO5	13	98670796	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	78390996	98670796	16499082	59	45427											
EPB42	2038	broad.mit.edu	37	15	43501531	43501531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	43501531	C	A	43501531	3	1	716	1	0	0	0	0	1	0	0	0	5160	739	26	4	1334	4	EPB42	15	43501531	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		43501531	59029861	60	45428											
C16orf54	283897	hgsc.bcm.edu	37	16	29755786	29755787	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	29755787	-	G	29755786	7	5	716	1	0	1	1	0	0	0	0	0	1821	768	27	0	191	0	C16orf54	16	29755786	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10		29755786	60598967	61	45429											
CNGB1	1258	broad.mit.edu	37	16	57984389	57984389	+	Silent	SNP	T	T	C	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	57984389	T	C	57984389	2	2	716	1	0	0	0	0	0	0	0	1	3602	1722	60	3		3	CNGB1	16	57984389	Silent	SNP	T	TCGA-KO-8406-01A-11D-2310-10	28228603	57984389	32370364	62	45430											
AP2B1	163	broad.mit.edu	37	17	34009754	34009754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	34009754	C	T	34009754	3	4	716	1	0	0	0	0	1	0	0	0	741	507	18	2	2431	2	AP2B1	17	34009754	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		34009754	47185456	63	45431											
KRT40	125115	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	39140079	39140079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	39140079	C	A	39140079	3	1	716	1	0	0	0	0	1	0	0	0	8485	695	24	4	876	4	KRT40	17	39140079	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	5130325	39140079	42055131	64	45432											
MAPT	4137	broad.mit.edu	37	17	44096020	44096020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	44096020	A	G	44096020	3	3	716	1	0	0	0	0	1	0	0	0	9304	275	10	3	2089	3	MAPT	17	44096020	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	4955941	44096020	37099190	65	45433											
PDCD2L	84306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	34895578	34895578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	34895578	C	T	34895578	3	4	716	1	0	0	0	0	1	0	0	0	11627	739	26	2	139	2	PDCD2L	19	34895578	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		34895578	24233405	66	45434											
MYH14	79784	mdanderson.org	37	19	50713655	50713655	+	Silent	SNP	G	G	C	rs8106196	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	50713655	G	C	50713655	2	2	716	1	0	0	0	0	0	0	0	1	10040	1161	41	4		4	MYH14	19	50713655	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10	15818077	50713655	8415328	67	45435											
SPIB	6689	broad.mit.edu	37	19	50931537	50931537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	50931537	C	A	50931537	3	1	716	1	0	0	0	0	1	0	0	0	15062	768	27	4	755	4	SPIB	19	50931537	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	217882	50931537	8197446	68	45436											
GP6	51206	mdanderson.org	37	19	55525596	55525596	+	Missense_Mutation	SNP	T	T	C	rs1654412	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	55525596	T	C	55525596	3	2	716	1	0	0	0	0	1	0	0	0	6591	1579	55	3	149	3	GP6	19	55525596	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	4594059	55525596	3603387	69	45437											
SIRPB1	10326	mdanderson.org	37	20	1559300	1559300	+	Missense_Mutation	SNP	T	T	G	rs202017659	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	1559300	T	G	1559300	3	3	716	1	0	0	0	0	1	0	0	0	14346	1838	64	5	1095	5	SIRPB1	20	1559300	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10		1559300	61466220	70	45438											
DSTN	11034	mdanderson.org	37	20	17581509	17581509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	17581509	A	G	17581509	3	3	716	1	0	0	0	0	1	0	0	0	4786	131	5	3	136	3	DSTN	20	17581509	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	16022209	17581509	45444011	71	45439											
PRPF6	24148	broad.mit.edu	37	20	62648170	62648170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	62648170	A	G	62648170	3	3	716	1	0	0	0	0	1	0	0	0	12584	72	3	3	1665	3	PRPF6	20	62648170	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	45066661	62648170	377350	72	45440											
FTCD	10841	mdanderson.org	37	21	47558473	47558473	+	Silent	SNP	G	G	C	rs1047179	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	47558473	G	C	47558473	2	2	716	1	0	0	0	0	0	0	0	1	6088	1219	43	4		4	FTCD	21	47558473	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10		47558473	571422	73	45441											
GGTLC2	91227	mdanderson.org	37	22	22988911	22988911	+	Silent	SNP	G	G	A	rs9612135	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	A	22988911	G	A	22988911	2	1	716	1	0	0	0	0	0	0	0	1	6373	1103	39	1		1	GGTLC2	22	22988911	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10		22988911	28315655	74	45442											
SGSM1	129049	broad.mit.edu	37	22	25294500	25294500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	25294500	G	T	25294500	3	4	716	1	0	0	0	0	1	0	0	0	14235	1377	48	4	2827	4	SGSM1	22	25294500	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	2305589	25294500	26010066	75	45443											
TUBGCP6	85378	ucsc.edu	37	22	50666367	50666367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	50666367	A	G	50666367	3	3	716	1	0	0	0	0	1	0	0	0	16782	14	1	3	4162	3	TUBGCP6	22	50666367	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	25371867	50666367	638199	76	45444											
VCX3B	425054	mdanderson.org	37	X	8434368	8434368	+	Missense_Mutation	SNP	G	G	C	rs199956874		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	C	8434368	G	C	8434368	3	2	716	1	0	0	0	0	1	0	0	0	17157	1059	37	4	605	4	VCX3B	23	8434368	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10		8434368	146836192	77	45445	647	2									
VCX3B	425054	mdanderson.org	37	X	8434371	8434371	+	Missense_Mutation	SNP	A	A	G	rs113934664		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	G	8434371	A	G	8434371	3	3	716	1	0	0	0	0	1	0	0	0	17157	333	12	3	608	3	VCX3B	23	8434371	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	3	8434371	146836189	78	45446	647	2									
SMARCA1	6594	broad.mit.edu	37	X	128614736	128614736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342	T	128614736	C	T	128614736	3	4	716	1	0	0	0	0	1	0	0	0	14781	768	27	1	804	1	SMARCA1	23	128614736	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	120180365	128614736	26655824	79	45447											
TAS1R3	83756	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	1268041	1268041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	1268041	C	T	1268041	3	4	717	1	0	0	0	0	1	0	0	0	15576	536	19	1	1140	1	TAS1R3	1	1268041	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		1268041	247982580	1	45448											
ATP13A2	23400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	17331882	17331882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	17331882	A	G	17331882	3	3	717	1	0	0	0	0	1	0	0	0	1124	449	16	3	3611	3	ATP13A2	1	17331882	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	16063841	17331882	231918739	2	45449											
HIPK1	204851	broad.mit.edu	37	1	114483676	114483676	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	114483676	A	C	114483676	3	2	717	1	0	0	0	0	1	0	0	0	7123	159	6	5	673	5	HIPK1	1	114483676	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	97151794	114483676	134766945	3	45450											
SYT11	23208	bcgsc.ca	37	1	155837927	155837927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	155837927	T	C	155837927	3	2	717	1	0	0	0	0	1	0	0	0	15479	1551	54	3	212	3	SYT11	1	155837927	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	41354251	155837927	93412694	4	45451											
BCAN	63827	hgsc.bcm.edu	37	1	156616757	156616758	+	In_Frame_Ins	INS	-	-	GGGAGG	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	GGGAGG	156616758	-	GGGAGG	156616757	7	5	717	1	0	1	1	0	0	0	0	0	1345	643	23	0	262	0	BCAN	1	156616757	In_Frame_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	778830	156616757	92633864	5	45452											
METTL13	51603	ucsc.edu	37	1	171753605	171753605	+	Silent	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	171753605	A	G	171753605	2	3	717	1	0	0	0	0	0	0	0	1	9504	40	2	3		3	METTL13	1	171753605	Silent	SNP	A	TCGA-KO-8407-01A-11D-2310-10	15136848	171753605	77497016	6	45453											
ATP2B4	493	broad.mit.edu	37	1	203693038	203693039	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	203693039	-	T	203693038	7	5	717	1	0	1	1	0	0	0	0	0	1142	668	24	0	3124	0	ATP2B4	1	203693038	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	31939433	203693038	45557583	7	45454											
EIF5B	9669	bcgsc.ca	37	2	99995848	99995848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	99995848	T	C	99995848	3	2	717	1	0	0	0	0	1	0	0	0	5046	1725	60	3	2064	3	EIF5B	2	99995848	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10		99995848	143203525	8	45455											
C2orf49	79074	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	105956200	105956200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	105956200	C	A	105956200	3	1	717	1	0	0	0	0	1	0	0	0	2173	565	20	4	266	4	C2orf49	2	105956200	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	5960352	105956200	137243173	9	45456											
NDUFS1	4719	broad.mit.edu	37	2	206988916	206988916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	206988916	A	G	206988916	3	3	717	1	0	0	0	0	1	0	0	0	10298	449	16	3	10	3	NDUFS1	2	206988916	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	101032716	206988916	36210457	10	45457											
KIF1A	547	ucsc.edu	37	2	241697840	241697840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	241697840	T	C	241697840	3	2	717	1	0	0	0	0	1	0	0	0	8290	1667	58	3	2672	3	KIF1A	2	241697840	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	34708924	241697840	1501533	11	45458											
VILL	50853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	38040486	38040486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	38040486	G	T	38040486	3	4	717	1	0	0	0	0	1	0	0	0	17177	962	34	4	1060	4	VILL	3	38040486	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		38040486	159981944	12	45459											
MYRIP	25924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	40211564	40211564	+	Missense_Mutation	SNP	C	C	T	rs142520074		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	40211564	C	T	40211564	3	4	717	1	0	0	0	0	1	0	0	0	10107	652	23	1	879	1	MYRIP	3	40211564	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	2171078	40211564	157810866	13	45460											
ASTE1	28990	mdanderson.org;bcgsc.ca	37	3	130743262	130743262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	130743262	C	T	130743262	3	4	717	1	0	0	0	0	1	0	0	0	1062	864	30	2	1166	2	ASTE1	3	130743262	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	90531698	130743262	67279168	14	45461											
CCNL1	57018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	156866283	156866283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	156866283	T	C	156866283	3	2	717	1	0	0	0	0	1	0	0	0	2933	1464	51	3	256	3	CCNL1	3	156866283	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	26123021	156866283	41156147	15	45462											
MUC4	4585	mdanderson.org	37	3	195505801	195505801	+	Missense_Mutation	SNP	G	G	A	rs200432267		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	195505801	G	A	195505801	3	1	717	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195505801	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	38639518	195505801	2516629	16	45463											
MUC4	4585	mdanderson.org	37	3	195507399	195507399	+	Silent	SNP	C	C	T	rs71187731	alternate_allele	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	195507399	C	T	195507399	2	4	717	1	0	0	0	0	0	0	0	1	9985	639	23	1		1	MUC4	3	195507399	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	1598	195507399	2515031	17	45464											
DCUN1D4	23142	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	4	52779712	52779712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	52779712	G	A	52779712	3	1	717	1	0	0	0	0	1	0	0	0	4318	1059	37	1	883	1	DCUN1D4	4	52779712	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		52779712	138374564	18	45465											
DNAH5	1767	broad.mit.edu;mdanderson.org;bcgsc.ca	37	5	13708238	13708238	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	13708238	C	T	13708238	4	4	717	1	0	0	0	0	0	1	0	0	4606	856	30	2	558	2	DNAH5	5	13708238	Nonsense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		13708238	167207022	19	45466											
THBS4	7060	broad.mit.edu	37	5	79331430	79331431	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	79331431	-	C	79331430	7	5	717	1	0	1	1	0	0	0	0	0	15868	1087	38	0	72	0	THBS4	5	79331430	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	65623192	79331430	101583830	20	45467											
PCDHA8	56140	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	5	140222358	140222358	+	Silent	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	140222358	G	A	140222358	2	1	717	1	0	0	0	0	0	0	0	1	11537	1074	38	1		1	PCDHA8	5	140222358	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10	60890928	140222358	40692902	21	45468											
RANBP9	10048	broad.mit.edu	37	6	13638047	13638047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	13638047	A	G	13638047	3	3	717	1	0	0	0	0	1	0	0	0	13045	72	3	3	543	3	RANBP9	6	13638047	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10		13638047	157477020	22	45469											
HLA-C	3107	mdanderson.org	37	6	31238866	31238866	+	Missense_Mutation	SNP	C	C	G	rs17413678	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	31238866	C	G	31238866	3	3	717	1	0	0	0	0	1	0	0	0	7204	912	32	4	521	4	HLA-C	6	31238866	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	17600819	31238866	139876201	23	45470											
COL12A1	1303	broad.mit.edu;mdanderson.org	37	6	75843574	75843574	+	Silent	SNP	C	C	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	75843574	C	A	75843574	2	1	717	1	0	0	0	0	0	0	0	1	3671	608	21	4		4	COL12A1	6	75843574	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	44604708	75843574	95271493	24	45471											
SYTL3	94120	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	159173001	159173001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	159173001	G	A	159173001	3	1	717	1	0	0	0	0	1	0	0	0	15496	1174	41	2	902	2	SYTL3	6	159173001	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	83329427	159173001	11942066	25	45472	648	2									
SYTL3	94120	hgsc.bcm.edu;ucsc.edu	37	6	159173011	159173011	+	Silent	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	159173011	G	A	159173011	2	1	717	1	0	0	0	0	0	0	0	1	15496	933	33	2		2	SYTL3	6	159173011	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10	10	159173011	11942056	26	45473	648	2									
ISPD	729920	broad.mit.edu	37	7	16341081	16341081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	16341081	T	C	16341081	3	2	717	1	0	0	0	0	1	0	0	0	7871	1841	64	3	579	3	ISPD	7	16341081	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10		16341081	142797582	27	45474											
PEX1	5189	bcgsc.ca	37	7	92116845	92116845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	92116845	A	G	92116845	3	3	717	1	0	0	0	0	1	0	0	0	11742	72	3	3	77	3	PEX1	7	92116845	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	75775764	92116845	67021818	28	45475											
ZAN	7455	broad.mit.edu;mdanderson.org;bcgsc.ca	37	7	100390083	100390083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	100390083	G	A	100390083	3	1	717	1	0	0	0	0	1	0	0	0	17525	1145	40	1	7930	1	ZAN	7	100390083	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	8273238	100390083	58748580	29	45476											
SPAM1	6677	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	123594255	123594255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	123594255	C	T	123594255	3	4	717	1	0	0	0	0	1	0	0	0	14999	875	31	1	633	1	SPAM1	7	123594255	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	23204172	123594255	35544408	30	45477											
NCAPG2	54892	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	158485614	158485614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	158485614	G	A	158485614	3	1	717	1	0	0	0	0	1	0	0	0	10215	942	33	2	3229	2	NCAPG2	7	158485614	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	34891359	158485614	653049	31	45478											
GGH	8836	mdanderson.org	37	8	63951312	63951312	+	Missense_Mutation	SNP	A	A	G	rs1800909	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	63951312	A	G	63951312	3	3	717	1	0	0	0	0	1	0	0	0	6364	188	7	3	976	3	GGH	8	63951312	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10		63951312	82412710	32	45479											
WWP1	11059	broad.mit.edu	37	8	87414376	87414376	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	-	87414376	G	-	87414376	7	5	717	1	0	1	0	1	0	0	0	0	17427	942	33	0	690	0	WWP1	8	87414376	Frame_Shift_Del	DEL	G	TCGA-KO-8407-01A-11D-2310-10	23463064	87414376	58949646	33	45480											
LRRC6	23639	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	133673863	133673863	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	133673863	A	T	133673863	3	4	717	1	0	0	0	0	1	0	0	0	9023	330	12	5	1423	5	LRRC6	8	133673863	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	46259487	133673863	12690159	34	45481											
FAM154A	158297	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	18941779	18941779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	18941779	C	T	18941779	3	4	717	1	0	0	0	0	1	0	0	0	5467	536	19	1	1155	1	FAM154A	9	18941779	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		18941779	122271652	35	45482											
MAMDC4	158056	mdanderson.org	37	9	139752899	139752899	+	Missense_Mutation	SNP	T	T	G	rs2275156	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	139752899	T	G	139752899	3	3	717	1	0	0	0	0	1	0	0	0	9211	1580	55	5	2808	5	MAMDC4	9	139752899	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	120811120	139752899	1460532	36	45483											
ENTPD2	954	broad.mit.edu	37	9	139946006	139946006	+	Silent	SNP	G	G	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	139946006	G	T	139946006	2	4	717	1	0	0	0	0	0	0	0	1	5141	1306	46	4		4	ENTPD2	9	139946006	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10	193107	139946006	1267425	37	45484											
ADD3	120	bcgsc.ca	37	10	111890182	111890182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	111890182	T	C	111890182	3	2	717	1	0	0	0	0	1	0	0	0	306	1551	54	3	1716	3	ADD3	10	111890182	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10		111890182	23644565	38	45485											
SYT8	90019	mdanderson.org	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	1858572	C	T	1858572	3	4	717	1	0	0	0	0	1	0	0	0	15492	759	27	1	1151	1	SYT8	11	1858572	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		1858572	133147944	39	45486											
SYT9	143425	broad.mit.edu	37	11	7439309	7439309	+	Silent	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	7439309	C	T	7439309	2	4	717	1	0	0	0	0	0	0	0	1	15493	639	23	1		1	SYT9	11	7439309	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	5580737	7439309	127567207	40	45487											
QSER1	79832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	32954825	32954825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	32954825	A	T	32954825	3	4	717	1	0	0	0	0	1	0	0	0	12895	449	16	5	1640	5	QSER1	11	32954825	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	25515516	32954825	102051691	41	45488											
CAPRIN1	4076	broad.mit.edu	37	11	34118204	34118204	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	-	34118204	T	-	34118204	7	5	717	1	0	1	0	1	0	0	0	0	2637	1567	55	0	1942	0	CAPRIN1	11	34118204	Frame_Shift_Del	DEL	T	TCGA-KO-8407-01A-11D-2310-10	1163379	34118204	100888312	42	45489											
OR5A1	219982	mdanderson.org	37	11	59211421	59211421	+	Silent	SNP	C	C	T	rs17591107	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	59211421	C	T	59211421	2	4	717	1	0	0	0	0	0	0	0	1	11146	883	31	1		1	OR5A1	11	59211421	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	25093217	59211421	75795095	43	45490											
FRMD8	83786	broad.mit.edu	37	11	65172422	65172423	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	65172423	-	C	65172422	7	5	717	1	0	1	1	0	0	0	0	0	6063	1551	54	0	1193	0	FRMD8	11	65172422	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	5961001	65172422	69834094	44	45491											
IQSEC3	440073	mdanderson.org	37	12	248071	248071	+	Missense_Mutation	SNP	G	G	C	rs77474006	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	248071	G	C	248071	3	2	717	1	0	0	0	0	1	0	0	0	7826	933	33	4	1556	4	IQSEC3	12	248071	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		248071	133603824	45	45492											
PRB4	5545	mdanderson.org	37	12	11461742	11461742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	11461742	C	T	11461742	3	4	717	1	0	0	0	0	1	0	0	0	12455	690	24	2	572	2	PRB4	12	11461742	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	11213671	11461742	122390153	46	45493											
DDX11	1663	mdanderson.org	37	12	31242999	31242999	+	Missense_Mutation	SNP	G	G	A	rs74617951		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	31242999	G	A	31242999	3	1	717	1	0	0	0	0	1	0	0	0	4345	1116	39	1	1090	1	DDX11	12	31242999	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	19781257	31242999	102608896	47	45494											
MLL2	8085	broad.mit.edu	37	12	49415604	49415605	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	49415605	-	G	49415604	7	5	717	1	0	1	1	0	0	0	0	0	9628	188	7	0	44	0	MLL2	12	49415604	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	18172605	49415604	84436291	48	45495											
KRT6B	3854	mdanderson.org	37	12	52843581	52843581	+	Silent	SNP	A	A	G	rs382894		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	52843581	A	G	52843581	2	3	717	1	0	0	0	0	0	0	0	1	8488	349	13	3		3	KRT6B	12	52843581	Silent	SNP	A	TCGA-KO-8407-01A-11D-2310-10	3427977	52843581	81008314	49	45496											
CEP290	80184	broad.mit.edu	37	12	88443060	88443060	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	-	88443060	T	-	88443060	7	5	717	1	0	1	0	1	0	0	0	0	3255	1722	60	0	102	0	CEP290	12	88443060	Frame_Shift_Del	DEL	T	TCGA-KO-8407-01A-11D-2310-10	35599479	88443060	45408835	50	45497											
BRAP	8315	broad.mit.edu;mdanderson.org;bcgsc.ca	37	12	112082340	112082340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	112082340	G	A	112082340	3	1	717	1	0	0	0	0	1	0	0	0	1499	1203	42	2	340	2	BRAP	12	112082340	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	23639280	112082340	21769555	51	45498											
WDR66	144406	broad.mit.edu	37	12	122361543	122361543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	122361543	A	G	122361543	3	3	717	1	0	0	0	0	1	0	0	0	17329	420	15	3	400	3	WDR66	12	122361543	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	10279203	122361543	11490352	52	45499											
PABPC3	5042	mdanderson.org	37	13	25671742	25671742	+	Missense_Mutation	SNP	G	G	A	rs140135080	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	25671742	G	A	25671742	3	1	717	1	0	0	0	0	1	0	0	0	11372	1058	37	1	1408	1	PABPC3	13	25671742	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		25671742	89498136	53	45500			1	142		2	2	18	N	G_C	4.612784e-05
PABPC3	5042	mdanderson.org	37	13	25671759	25671759	+	Missense_Mutation	SNP	C	C	T	rs115121649	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	25671759	C	T	25671759	3	4	717	1	0	0	0	0	1	0	0	0	11372	768	27	1	1425	1	PABPC3	13	25671759	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	17	25671759	89498119	54	45501			1	142		2	2	18	N	G_C	4.612784e-05
LECT1	11061	ucsc.edu	37	13	53313218	53313218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	53313218	A	G	53313218	3	3	717	1	0	0	0	0	1	0	0	0	8719	188	7	3	867	3	LECT1	13	53313218	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	27641459	53313218	61856660	55	45502											
ADAM21	8747	mdanderson.org	37	14	70924335	70924335	+	Missense_Mutation	SNP	C	C	T	rs199920662	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	70924335	C	T	70924335	3	4	717	1	0	0	0	0	1	0	0	0	243	652	23	1	121	1	ADAM21	14	70924335	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		70924335	36425205	56	45503											
PRIMA1	145270	mdanderson.org	37	14	94245649	94245649	+	Silent	SNP	A	A	G	rs4905087	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	94245649	A	G	94245649	2	3	717	1	0	0	0	0	0	0	0	1	12502	214	8	3		3	PRIMA1	14	94245649	Silent	SNP	A	TCGA-KO-8407-01A-11D-2310-10	23321314	94245649	13103891	57	45504	649	2									
PRIMA1	145270	mdanderson.org	37	14	94245652	94245652	+	Silent	SNP	C	C	T	rs4900195	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	94245652	C	T	94245652	2	4	717	1	0	0	0	0	0	0	0	1	12502	755	27	1		1	PRIMA1	14	94245652	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	3	94245652	13103888	58	45505	649	2									
SPG11	80208	hgsc.bcm.edu;ucsc.edu	37	15	44881589	44881589	+	Silent	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	44881589	G	A	44881589	2	1	717	1	0	0	0	0	0	0	0	1	15053	1161	41	2		2	SPG11	15	44881589	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10		44881589	57649803	59	45506											
CALML4	91860	broad.mit.edu	37	15	68489865	68489866	+	In_Frame_Ins	INS	-	-	CAT	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	CAT	68489866	-	CAT	68489865	7	5	717	1	0	1	1	0	0	0	0	0	2590	507	18	0	192	0	CALML4	15	68489865	In_Frame_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	23608276	68489865	34041527	60	45507											
ASB7	140460	broad.mit.edu	37	15	101170058	101170058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	101170058	C	T	101170058	3	4	717	1	0	0	0	0	1	0	0	0	1028	884	31	1	634	1	ASB7	15	101170058	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	32680193	101170058	1361334	61	45508											
TPSAB1	7177	mdanderson.org	37	16	1291160	1291160	+	Missense_Mutation	SNP	G	G	T	rs141519544	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	1291160	G	T	1291160	3	4	717	1	0	0	0	0	1	0	0	0	16435	1203	42	4	74	4	TPSAB1	16	1291160	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		1291160	89063593	62	45509			2	143		2	2	23	N	G_C	5.969444e-05
TPSAB1	7177	mdanderson.org	37	16	1291182	1291182	+	Silent	SNP	C	C	T	rs112531166		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	1291182	C	T	1291182	2	4	717	1	0	0	0	0	0	0	0	1	16435	697	25	2		2	TPSAB1	16	1291182	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	22	1291182	89063571	63	45510			2	143		2	2	23	N	G_C	5.969444e-05
PRSS36	146547	broad.mit.edu	37	16	31154780	31154780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	31154780	G	T	31154780	3	4	717	1	0	0	0	0	1	0	0	0	12635	1203	42	4	1616	4	PRSS36	16	31154780	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	29863598	31154780	59199973	64	45511											
PIGS	94005	bcgsc.ca	37	17	26882056	26882056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	26882056	G	A	26882056	3	1	717	1	0	0	0	0	1	0	0	0	11905	1232	43	2	470	2	PIGS	17	26882056	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		26882056	54313154	65	45512											
LRRC37B	114659	bcgsc.ca	37	17	30348140	30348140	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	30348140	C	G	30348140	3	3	717	1	0	0	0	0	1	0	0	0	9001	812	28	4		4	LRRC37B	17	30348140	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	3466084	30348140	50847070	66	45513											
BPTF	2186	broad.mit.edu;hgsc.bcm.edu	37	17	65909291	65909291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	65909291	G	A	65909291	3	1	717	1	0	0	0	0	1	0	0	0	1497	1203	42	2	5719	2	BPTF	17	65909291	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	35561151	65909291	15285919	67	45514											
FADS6	283985	mdanderson.org	37	17	72889685	72889685	+	Silent	SNP	G	G	A	rs2683274	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	72889685	G	A	72889685	2	1	717	1	0	0	0	0	0	0	0	1	5372	1335	47	2		2	FADS6	17	72889685	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10	6980394	72889685	8305525	68	45515											
SEPT9	10801	broad.mit.edu	37	17	75398360	75398361	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	75398361	-	G	75398360	7	5	717	1	0	1	1	0	0	0	0	0	14084	72	3	0	391	0	SEPT9	17	75398360	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	2508675	75398360	5796850	69	45516											
GPS1	2873	broad.mit.edu	37	17	80010268	80010268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	80010268	T	C	80010268	3	2	717	1	0	0	0	0	1	0	0	0	6739	1667	58	3	125	3	GPS1	17	80010268	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	4611908	80010268	1184942	70	45517											
POTEC	388468	mdanderson.org	37	18	14542888	14542888	+	Silent	SNP	A	A	G	rs8040506	bycluster	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	14542888	A	G	14542888	2	3	717	1	0	0	0	0	0	0	0	1	12269	214	8	3		3	POTEC	18	14542888	Silent	SNP	A	TCGA-KO-8407-01A-11D-2310-10		14542888	63534360	71	45518											
ASXL3	80816	broad.mit.edu	37	18	31325884	31325884	+	Silent	SNP	T	T	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	31325884	T	C	31325884	2	2	717	1	0	0	0	0	0	0	0	1	1068	1538	54	3		3	ASXL3	18	31325884	Silent	SNP	T	TCGA-KO-8407-01A-11D-2310-10	16782996	31325884	46751364	72	45519											
TMX3	54495	ucsc.edu	37	18	66365223	66365223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	66365223	C	T	66365223	3	4	717	1	0	0	0	0	1	0	0	0	16280	710	25	2	966	2	TMX3	18	66365223	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	35039339	66365223	11712025	73	45520											
WDR18	57418	mdanderson.org	37	19	984554	984554	+	Silent	SNP	C	C	G	rs4806884	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	984554	C	G	984554	2	3	717	1	0	0	0	0	0	0	0	1	17290	842	30	4		4	WDR18	19	984554	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10		984554	58144429	74	45521											
COL5A3	50509	mdanderson.org;bcgsc.ca	37	19	10078060	10078060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	10078060	C	T	10078060	3	4	717	1	0	0	0	0	1	0	0	0	3700	536	19	1	840	1	COL5A3	19	10078060	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	9093506	10078060	49050923	75	45522											
LILRA1	11024	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	19	55107718	55107718	+	Silent	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	55107718	C	T	55107718	2	4	717	1	0	0	0	0	0	0	0	1	8791	535	19	1		1	LILRA1	19	55107718	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	45029658	55107718	4021265	76	45523											
SLC32A1	140679	broad.mit.edu	37	20	37356927	37356927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	37356927	C	T	37356927	3	4	717	1	0	0	0	0	1	0	0	0	14578	893	31	1	1229	1	SLC32A1	20	37356927	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		37356927	25668593	77	45524											
APP	351	broad.mit.edu	37	21	27372385	27372386	+	Frame_Shift_Ins	INS	-	-	C	rs141526793	bycluster;by1000genomes	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	27372386	-	C	27372385	7	5	717	1	0	1	1	0	0	0	0	0	815	1306	46	0	1382	0	APP	21	27372385	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10		27372385	20757510	78	45525											
USP16	10600	broad.mit.edu	37	21	30409627	30409627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	30409627	A	G	30409627	3	3	717	1	0	0	0	0	1	0	0	0	17059	246	9	3	497	3	USP16	21	30409627	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	3037242	30409627	17720268	79	45526											
KRTAP10-6	386674	mdanderson.org	37	21	46011987	46011987	+	Missense_Mutation	SNP	A	A	G	rs201334923		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	46011987	A	G	46011987	3	3	717	1	0	0	0	0	1	0	0	0	8520	275	10	3	722	3	KRTAP10-6	21	46011987	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	15602360	46011987	2117908	80	45527											
MTMR3	8897	mdanderson.org	37	22	30419455	30419455	+	Silent	SNP	C	C	T	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	T	30419455	C	T	30419455	2	4	717	1	0	0	0	0	0	0	0	1	9952	506	18	2		2	MTMR3	22	30419455	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10		30419455	20885111	81	45528											
SEC14L3	266629	broad.mit.edu	37	22	30857663	30857664	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	30857664	-	C	30857663	7	5	717	1	0	1	1	0	0	0	0	0	13996	1435	50	0	424	0	SEC14L3	22	30857663	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	438208	30857663	20446903	82	45529											
RBX1	9978	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	22	41368482	41368482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	41368482	A	G	41368482	3	3	717	1	0	0	0	0	1	0	0	0	13178	449	16	3	335	3	RBX1	22	41368482	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	10510819	41368482	9936084	83	45530											
CLCN5	1184	bcgsc.ca	37	X	49834549	49834549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	G	49834549	A	G	49834549	3	3	717	1	0	0	0	0	1	0	0	0	3468	101	4	3	189	3	CLCN5	23	49834549	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10		49834549	105436011	84	45531											
NHSL2	340527	broad.mit.edu	37	X	71360546	71360546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	A	71360546	G	A	71360546	3	1	717	1	0	0	0	0	1	0	0	0	10419	1058	37	1	3170	1	NHSL2	23	71360546	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	21525997	71360546	83910014	85	45532											
TMEM31	203562	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	102967204	102967204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3	C	102967204	G	C	102967204	3	2	717	1	0	0	0	0	1	0	0	0	16167	933	33	4	20	4	TMEM31	23	102967204	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	31606658	102967204	52303356	86	45533											
SKI	6497	bcgsc.ca	37	1	2235304	2235304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	2235304	A	G	2235304	3	3	718	1	0	0	0	0	1	0	0	0	14370	275	10	3	1251	3	SKI	1	2235304	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10		2235304	247015317	1	45534											
PRDM16	63976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	3328864	3328864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	3328864	G	C	3328864	3	2	718	1	0	0	0	0	1	0	0	0	12467	933	33	4	2137	4	PRDM16	1	3328864	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	1093560	3328864	245921757	2	45535											
UBXN11	91544	mdanderson.org	37	1	26608852	26608852	+	Missense_Mutation	SNP	G	G	A	rs61775089		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	26608852	G	A	26608852	3	1	718	1	0	0	0	0	1	0	0	0	16925	1232	43	2	65	2	UBXN11	1	26608852	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	23279988	26608852	222641769	3	45536											
PLEKHA6	22874	broad.mit.edu	37	1	204226633	204226633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	204226633	G	A	204226633	3	1	718	1	0	0	0	0	1	0	0	0	12067	1116	39	1	1830	1	PLEKHA6	1	204226633	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	177617781	204226633	45023988	4	45537											
PROX1	5629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	1	214171243	214171243	+	Silent	SNP	T	T	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	214171243	T	A	214171243	2	1	718	1	0	0	0	0	0	0	0	1	12570	1567	55	5		5	PROX1	1	214171243	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10	9944610	214171243	35079378	5	45538											
SH2D6	284948	broad.mit.edu	37	2	85662144	85662144	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	85662144	A	-	85662144	7	5	718	1	0	1	0	1	0	0	0	0	14251	146	6	0	68	0	SH2D6	2	85662144	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10		85662144	157537229	6	45539											
RGPD2	729857	broad.mit.edu	37	2	88125234	88125234	+	Silent	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	88125234	T	C	88125234	2	2	718	1	0	0	0	0	0	0	0	1	13299	1606	56	3		3	RGPD2	2	88125234	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10	2463090	88125234	155074139	7	45540											
TEKT4	150483	mdanderson.org	37	2	95537622	95537622	+	Missense_Mutation	SNP	A	A	G	rs11164112	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	95537622	A	G	95537622	3	3	718	1	0	0	0	0	1	0	0	0	15767	188	7	3	300	3	TEKT4	2	95537622	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	7412388	95537622	147661751	8	45541											
ZAK	0	broad.mit.edu	37	2	174074493	174074493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	174074493	G	A	174074493	3	1	718	1	0	0	0	0	1	0	0	0	17524	1175	41	2	815	2	ZAK	2	174074493	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	78536871	174074493	69124880	9	45542											
ALS2CL	259173	broad.mit.edu	37	3	46728540	46728541	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	46728541	-	G	46728540	7	5	718	1	0	1	1	0	0	0	0	0	551	1580	55	0	2482	0	ALS2CL	3	46728540	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10		46728540	151293890	10	45543											
CELSR3	1951	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	48694702	48694702	+	Silent	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	48694702	G	A	48694702	2	1	718	1	0	0	0	0	0	0	0	1	3225	1103	39	1		1	CELSR3	3	48694702	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	1966162	48694702	149327728	11	45544											
WDR6	11180	broad.mit.edu	37	3	49049218	49049218	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	49049218	T	-	49049218	7	5	718	1	0	1	0	1	0	0	0	0	17322	1696	59	0	347	0	WDR6	3	49049218	Frame_Shift_Del	DEL	T	TCGA-KO-8408-01A-11D-2310-10	354516	49049218	148973212	12	45545											
CBLB	868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	105464866	105464866	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	105464866	A	C	105464866	3	2	718	1	0	0	0	0	1	0	0	0	2703	131	5	5	2264	5	CBLB	3	105464866	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	56415648	105464866	92557564	13	45546											
KIAA2018	205717	broad.mit.edu	37	3	113378994	113378995	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	113378995	-	G	113378994	7	5	718	1	0	1	1	0	0	0	0	0	8275	1580	55	0	5206	0	KIAA2018	3	113378994	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	7914128	113378994	84643436	14	45547											
SEC22A	26984	broad.mit.edu	37	3	122990419	122990419	+	Missense_Mutation	SNP	G	G	T	rs190644797	bycluster	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	122990419	G	T	122990419	3	4	718	1	0	0	0	0	1	0	0	0	14001	1281	45	4	796	4	SEC22A	3	122990419	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	9611425	122990419	75032011	15	45548											
C3orf58	205428	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	143704589	143704589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	143704589	G	T	143704589	3	4	718	1	0	0	0	0	1	0	0	0	2238	1145	40	4	902	4	C3orf58	3	143704589	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	20714170	143704589	54317841	16	45549											
GFM1	85476	broad.mit.edu	37	3	158362472	158362473	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	158362473	-	C	158362472	7	5	718	1	0	1	1	0	0	0	0	0	6348	1203	42	0	51	0	GFM1	3	158362472	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	14657883	158362472	39659958	17	45550											
MUC4	4585	mdanderson.org	37	3	195509045	195509045	+	Missense_Mutation	SNP	C	C	G	rs75309583		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	195509045	C	G	195509045	3	3	718	1	0	0	0	0	1	0	0	0	9985	768	27	4		4	MUC4	3	195509045	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	37146573	195509045	2513385	18	45551			1	144		3	3	1665	N	G_C	2.978458e-05
MUC4	4585	mdanderson.org	37	3	195509218	195509218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	195509218	G	T	195509218	3	4	718	1	0	0	0	0	1	0	0	0	9985	1029	36	4		4	MUC4	3	195509218	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	173	195509218	2513212	19	45552			1	144		3	3	1665	N	G_C	2.978458e-05
MUC4	4585	mdanderson.org	37	3	195510709	195510709	+	Missense_Mutation	SNP	C	C	T	rs74504395	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	195510709	C	T	195510709	3	4	718	1	0	0	0	0	1	0	0	0	9985	797	28	2		2	MUC4	3	195510709	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	1491	195510709	2511721	20	45553			1	144		3	3	1665	N	G_C	2.978458e-05
CRIPAK	285464	mdanderson.org	37	4	1389148	1389148	+	Silent	SNP	T	T	C	rs79888804	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	1389148	T	C	1389148	2	2	718	1	0	0	0	0	0	0	0	1	3879	1461	51	3		3	CRIPAK	4	1389148	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10		1389148	189765128	21	45554											
FBXL5	26234	broad.mit.edu	37	4	15627587	15627587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	15627587	C	A	15627587	3	1	718	1	0	0	0	0	1	0	0	0	5729	594	21	4	949	4	FBXL5	4	15627587	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	14238439	15627587	175526689	22	45555											
FRAS1	80144	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	79301068	79301068	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	79301068	C	T	79301068	4	4	718	1	0	0	0	0	0	1	0	0	6049	827	29	2	3587	2	FRAS1	4	79301068	Nonsense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	63673481	79301068	111853208	23	45556											
AGPAT9	84803	broad.mit.edu;mdanderson.org	37	4	84465716	84465716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	84465716	A	G	84465716	3	3	718	1	0	0	0	0	1	0	0	0	392	43	2	3	175	3	AGPAT9	4	84465716	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	5164648	84465716	106688560	24	45557											
DSPP	1834	mdanderson.org	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	88536953	G	A	88536953	3	1	718	1	0	0	0	0	1	0	0	0	4784	1058	37	1	3153	1	DSPP	4	88536953	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	4071237	88536953	102617323	25	45558											
QRFPR	84109	bcgsc.ca	37	4	122250742	122250742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	122250742	T	A	122250742	3	1	718	1	0	0	0	0	1	0	0	0	12891	1838	64	5	276	5	QRFPR	4	122250742	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	33713789	122250742	68903534	26	45559											
FRG1	2483	mdanderson.org	37	4	190876210	190876210	+	Silent	SNP	C	C	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	190876210	C	G	190876210	2	3	718	1	0	0	0	0	0	0	0	1	6053	784	28	4		4	FRG1	4	190876210	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	68625468	190876210	278066	27	45560											
RAD17	5884	broad.mit.edu	37	5	68695895	68695895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	68695895	C	T	68695895	3	4	718	1	0	0	0	0	1	0	0	0	12992	710	25	2	1692	2	RAD17	5	68695895	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10		68695895	112219365	28	45561											
SPZ1	84654	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	79616249	79616249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	79616249	T	G	79616249	3	3	718	1	0	0	0	0	1	0	0	0	15139	1551	54	5	217	5	SPZ1	5	79616249	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	10920354	79616249	101299011	29	45562											
C5orf20	140947	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	134782502	134782502	+	Silent	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	134782502	C	T	134782502	2	4	718	1	0	0	0	0	0	0	0	1	2286	871	31	1		1	C5orf20	5	134782502	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	55166253	134782502	46132758	30	45563											
PCDHB16	57717	mdanderson.org	37	5	140563708	140563708	+	Missense_Mutation	SNP	G	G	A	rs17844651	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	140563708	G	A	140563708	3	1	718	1	0	0	0	0	1	0	0	0	11548	1116	39	1	1576	1	PCDHB16	5	140563708	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	5781206	140563708	40351552	31	45564	650	2	2	145		5	4	10047	N	T_G_AG_A	1.6418e-05
PCDHB16	57717	mdanderson.org	37	5	140563711	140563712	+	Missense_Mutation	DNP	AG	AG	CT	rs17844653	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	CT	140563712	AG	CT	140563711	3	2	718	1	0	0	0	0	1	0	0	0	11548	304	11	5	1579	5	PCDHB16	5	140563711	Missense_Mutation	DNP	AG	TCGA-KO-8408-01A-11D-2310-10	3	140563711	40351549	32	45565	650	2	2	145		5	4	10047	N	T_G_AG_A	1.6418e-05
PCDHB16	57717	mdanderson.org	37	5	140563754	140563754	+	Silent	SNP	T	T	G	rs17844656	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	140563754	T	G	140563754	2	3	718	1	0	0	0	0	0	0	0	1	11548	1596	56	5		5	PCDHB16	5	140563754	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10	43	140563754	40351506	33	45566			2	145		5	4	10047	N	T_G_AG_A	1.6418e-05
PCDHB10	56126	mdanderson.org	37	5	140573719	140573719	+	Missense_Mutation	SNP	G	G	A	rs148484995	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	140573719	G	A	140573719	3	1	718	1	0	0	0	0	1	0	0	0	11542	1232	43	2	1596	2	PCDHB10	5	140573719	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	9965	140573719	40341541	34	45567			2	145		5	4	10047	N	T_G_AG_A	1.6418e-05
PCDHB10	56126	mdanderson.org	37	5	140573754	140573754	+	Missense_Mutation	SNP	A	A	C	rs77697313		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	140573754	A	C	140573754	3	2	718	1	0	0	0	0	1	0	0	0	11542	301	11	5	1631	5	PCDHB10	5	140573754	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	35	140573754	40341506	35	45568			2	145		5	4	10047	N	T_G_AG_A	1.6418e-05
ARSI	340075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	149677902	149677902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	149677902	C	A	149677902	3	1	718	1	0	0	0	0	1	0	0	0	994	680	24	4	1128	4	ARSI	5	149677902	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	9104148	149677902	31237358	36	45569											
HLA-A	3105	mdanderson.org	37	6	29911240	29911240	+	Nonsense_Mutation	SNP	T	T	A	rs9260156	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	29911240	T	A	29911240	4	1	718	1	0	0	0	0	0	1	0	0	7202	1821	63	5	549	5	HLA-A	6	29911240	Nonsense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10		29911240	141203827	37	45570											
HLA-B	3106	mdanderson.org	37	6	31324208	31324208	+	Missense_Mutation	SNP	G	G	T	rs12721829	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	31324208	G	T	31324208	3	4	718	1	0	0	0	0	1	0	0	0	7203	1000	35	4	753	4	HLA-B	6	31324208	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	1412968	31324208	139790859	38	45571	651	2									
HLA-B	3106	mdanderson.org	37	6	31324210	31324210	+	Missense_Mutation	SNP	G	G	A	rs12721827	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	31324210	G	A	31324210	3	1	718	1	0	0	0	0	1	0	0	0	7203	1261	44	2	755	2	HLA-B	6	31324210	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	2	31324210	139790857	39	45572	651	2									
HLA-B	3106	broad.mit.edu	37	6	31324488	31324489	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	GG	31324489	-	GG	31324488	7	5	718	1	0	1	1	0	0	0	0	0	7203	739	26	0	792	0	HLA-B	6	31324488	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	278	31324488	139790579	40	45573											
SYNE1	23345	ucsc.edu	37	6	152577848	152577848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	152577848	T	C	152577848	3	2	718	1	0	0	0	0	1	0	0	0	15457	1667	58	3	7621	3	SYNE1	6	152577848	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	121253360	152577848	18537219	41	45574											
C7orf50	84310	ucsc.edu	37	7	1167008	1167008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	1167008	T	C	1167008	3	2	718	1	0	0	0	0	1	0	0	0	2401	1609	56	3	586	3	C7orf50	7	1167008	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10		1167008	157971655	42	45575											
RADIL	55698	mdanderson.org	37	7	4841470	4841470	+	Missense_Mutation	SNP	T	T	C	rs414035		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	4841470	T	C	4841470	3	2	718	1	0	0	0	0	1	0	0	0	13010	1580	55	3	587	3	RADIL	7	4841470	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	3674462	4841470	154297193	43	45576											
TNRC18	84629	mdanderson.org	37	7	5353337	5353337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	5353337	C	A	5353337	3	1	718	1	0	0	0	0	1	0	0	0	16351	796	28	4	1737	4	TNRC18	7	5353337	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	511867	5353337	153785326	44	45577											
HIP1	3092	broad.mit.edu	37	7	75187548	75187549	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	75187549	-	T	75187548	7	5	718	1	0	1	1	0	0	0	0	0	7121	797	28	0	1794	0	HIP1	7	75187548	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	69834211	75187548	83951115	45	45578											
MDH2	4191	mdanderson.org	37	7	75677504	75677504	+	Missense_Mutation	SNP	C	C	T	rs6720	bycluster;byfrequency;by1000genomes	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	75677504	C	T	75677504	3	4	718	1	0	0	0	0	1	0	0	0	9417	739	26	2	28	2	MDH2	7	75677504	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	489956	75677504	83461159	46	45579											
DTX2	113878	mdanderson.org	37	7	76112348	76112348	+	Silent	SNP	C	C	G	rs2539636		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	76112348	C	G	76112348	2	3	718	1	0	0	0	0	0	0	0	1	4796	581	21	4		4	DTX2	7	76112348	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	434844	76112348	83026315	47	45580											
PCOLCE	5118	broad.mit.edu;hgsc.bcm.edu	37	7	100204166	100204166	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	100204166	G	-	100204166	7	5	718	1	0	1	0	1	0	0	0	0	11601	1116	39	0	875	0	PCOLCE	7	100204166	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	24091818	100204166	58934497	48	45581	652	3									
PCOLCE	5118	bcgsc.ca	37	7	100204167	100204167	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	100204167	G	-	100204167	7	5	718	1	0	1	0	1	0	0	0	0	11601	1203	42	0	876	0	PCOLCE	7	100204167	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	1	100204167	58934496	49	45582	652	3									
PCOLCE	5118	hgsc.bcm.edu	37	7	100204168	100204168	+	Silent	SNP	C	C	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	100204168	C	A	100204168	2	1	718	1	0	0	0	0	0	0	0	1	11601	726	26	4		4	PCOLCE	7	100204168	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	1	100204168	58934495	50	45583	652	3									
ZAN	7455	bcgsc.ca	37	7	100334192	100334192	+	Nonsense_Mutation	SNP	C	C	T	rs200760090		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	100334192	C	T	100334192	4	4	718	1	0	0	0	0	0	1	0	0	17525	876	31	1	203	1	ZAN	7	100334192	Nonsense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	130024	100334192	58804471	51	45584											
ZAN	7455	broad.mit.edu	37	7	100349927	100349927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	100349927	C	-	100349927	7	5	718	1	0	1	0	1	0	0	0	0	17525	903	32	0	2249	0	ZAN	7	100349927	Frame_Shift_Del	DEL	C	TCGA-KO-8408-01A-11D-2310-10	15735	100349927	58788736	52	45585	653	2									
ZAN	7455	broad.mit.edu	37	7	100349931	100349932	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	100349932	-	T	100349931	7	5	718	1	0	1	1	0	0	0	0	0	17525	623	22	0	2253	0	ZAN	7	100349931	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	4	100349931	58788732	53	45586	653	2									
PLXNA4	91584	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	131913154	131913154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	131913154	C	T	131913154	3	4	718	1	0	0	0	0	1	0	0	0	12129	652	23	1	4113	1	PLXNA4	7	131913154	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	31563223	131913154	27225509	54	45587											
SLC35B4	84912	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	133986798	133986798	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	133986798	T	A	133986798	3	1	718	1	0	0	0	0	1	0	0	0	14591	1406	49	5	610	5	SLC35B4	7	133986798	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	2073644	133986798	25151865	55	45588											
PDIA4	9601	mdanderson.org	37	7	148725417	148725417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	148725417	G	T	148725417	3	4	718	1	0	0	0	0	1	0	0	0	11677	1136	40	4	1893	4	PDIA4	7	148725417	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	14738619	148725417	10413246	56	45589											
KRBA1	84626	broad.mit.edu	37	7	149430350	149430351	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	149430351	-	C	149430350	7	5	718	1	0	1	1	0	0	0	0	0	8446	1538	54	0	2368	0	KRBA1	7	149430350	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	704933	149430350	9708313	57	45590											
ACTR3B	57180	mdanderson.org	37	7	152522195	152522195	+	Silent	SNP	C	C	T	rs200914813	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	152522195	C	T	152522195	2	4	718	1	0	0	0	0	0	0	0	1	213	726	26	2		2	ACTR3B	7	152522195	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	3091845	152522195	6616468	58	45591											
HR	55806	broad.mit.edu	37	8	21980059	21980060	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	21980060	-	G	21980059	7	5	718	1	0	1	1	0	0	0	0	0	7354	188	7	0	1549	0	HR	8	21980059	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10		21980059	124383963	59	45592											
BMP1	649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	22052331	22052331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	22052331	A	G	22052331	3	3	718	1	0	0	0	0	1	0	0	0	1456	304	11	3	1584	3	BMP1	8	22052331	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	72272	22052331	124311691	60	45593											
FAM150A	389658	mdanderson.org	37	8	53477780	53477780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	53477780	G	C	53477780	3	2	718	1	0	0	0	0	1	0	0	0	5460	1029	36	4	368	4	FAM150A	8	53477780	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	31425449	53477780	92886242	61	45594											
RIPK2	8767	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	8	90802425	90802425	+	Silent	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	90802425	G	A	90802425	2	1	718	1	0	0	0	0	0	0	0	1	13394	1281	45	2		2	RIPK2	8	90802425	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	37324645	90802425	55561597	62	45595											
COL14A1	7373	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	121238908	121238908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	121238908	C	T	121238908	3	4	718	1	0	0	0	0	1	0	0	0	3673	536	19	1	1965	1	COL14A1	8	121238908	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	30436483	121238908	25125114	63	45596											
EPPK1	83481	mdanderson.org	37	8	144940378	144940378	+	Silent	SNP	G	G	A	rs62641757		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	144940378	G	A	144940378	2	1	718	1	0	0	0	0	0	0	0	1	5192	1277	45	2		2	EPPK1	8	144940378	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	23701470	144940378	1423644	64	45597											
OPLAH	26873	broad.mit.edu	37	8	145108284	145108284	+	Missense_Mutation	SNP	G	G	T	rs186909122	by1000genomes;alternate_allele	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	145108284	G	T	145108284	3	4	718	1	0	0	0	0	1	0	0	0	10883	1203	42	4	1201	4	OPLAH	8	145108284	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	167906	145108284	1255738	65	45598											
OPLAH	26873	mdanderson.org	37	8	145113241	145113241	+	Missense_Mutation	SNP	T	T	G	rs3935209	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	145113241	T	G	145113241	3	3	718	1	0	0	0	0	1	0	0	0	10883	1580	55	5	3102	5	OPLAH	8	145113241	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	4957	145113241	1250781	66	45599											
PRSS3	5646	mdanderson.org	37	9	33796660	33796660	+	Silent	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	33796660	T	C	33796660	2	2	718	1	0	0	0	0	0	0	0	1	12632	1461	51	3		3	PRSS3	9	33796660	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10		33796660	107416771	67	45600											
IL11RA	3590	broad.mit.edu	37	9	34658538	34658538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	34658538	G	T	34658538	3	4	718	1	0	0	0	0	1	0	0	0	7630	1203	42	4	694	4	IL11RA	9	34658538	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	861878	34658538	106554893	68	45601											
DCAF10	79269	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	9	37861212	37861212	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	37861212	C	G	37861212	3	3	718	1	0	0	0	0	1	0	0	0	4263	826	29	4	1413	4	DCAF10	9	37861212	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	3202674	37861212	103352219	69	45602											
TUBB8	347688	mdanderson.org	37	10	94005	94005	+	Silent	SNP	G	G	A	rs71482274	alternate_allele	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	94005	G	A	94005	2	1	718	1	0	0	0	0	0	0	0	1	16773	1074	38	1		1	TUBB8	10	94005	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10		94005	135440742	70	45603			3	146		2	2	14	N	T_G	6.046973e-05
TUBB8	347688	mdanderson.org	37	10	94018	94018	+	Missense_Mutation	SNP	T	T	C	rs9329307	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	94018	T	C	94018	3	2	718	1	0	0	0	0	1	0	0	0	16773	1696	59	3	1024	3	TUBB8	10	94018	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	13	94018	135440729	71	45604			3	146		2	2	14	N	T_G	6.046973e-05
GPRIN2	9721	mdanderson.org	37	10	47000239	47000239	+	Silent	SNP	C	C	T	rs7912299	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	47000239	C	T	47000239	2	4	718	1	0	0	0	0	0	0	0	1	6737	639	23	1		1	GPRIN2	10	47000239	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	46906221	47000239	88534508	72	45605											
ARID5B	84159	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	10	63700094	63700094	+	Silent	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	63700094	G	A	63700094	2	1	718	1	0	0	0	0	0	0	0	1	922	1306	46	2		2	ARID5B	10	63700094	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	16699855	63700094	71834653	73	45606											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	10	89693003	89693003	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	89693003	A	T	89693003	4	4	718	1	0	0	0	0	0	1	0	0	12748	131	5	5	505	5	PTEN	10	89693003	Nonsense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	25992909	89693003	45841744	74	45607											
C10orf12	26148	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	98743653	98743653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	98743653	A	G	98743653	3	3	718	1	0	0	0	0	1	0	0	0	1591	247	9	3	2508	3	C10orf12	10	98743653	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	9050650	98743653	36791094	75	45608											
AP2A2	161	broad.mit.edu	37	11	970195	970195	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	970195	A	-	970195	7	5	718	1	0	1	0	1	0	0	0	0	740	363	13	0	173	0	AP2A2	11	970195	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10		970195	134036321	76	45609											
MUC2	4583	hgsc.bcm.edu	37	11	1092954	1092954	+	Silent	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	1092954	G	A	1092954	2	1	718	1	0	0	0	0	0	0	0	1	9982	1103	39	1		1	MUC2	11	1092954	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	122759	1092954	133913562	77	45610											
NUP98	4928	broad.mit.edu	37	11	3793077	3793078	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	3793078	-	A	3793077	7	5	718	1	0	1	1	0	0	0	0	0	10780	594	21	0	4897	0	NUP98	11	3793077	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	2700123	3793077	131213439	78	45611											
SMPD1	6609	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	6415260	6415260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	6415260	G	C	6415260	3	2	718	1	0	0	0	0	1	0	0	0	14817	1203	42	4	1533	4	SMPD1	11	6415260	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	2622183	6415260	128591256	79	45612											
INSC	387755	broad.mit.edu	37	11	15267583	15267583	+	Silent	SNP	G	G	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	15267583	G	T	15267583	2	4	718	1	0	0	0	0	0	0	0	1	7771	1364	48	4		4	INSC	11	15267583	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	8852323	15267583	119738933	80	45613											
CD5	921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	60886402	60886402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	60886402	C	G	60886402	3	3	718	1	0	0	0	0	1	0	0	0	3023	478	17	4	430	4	CD5	11	60886402	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	45618819	60886402	74120114	81	45614											
YAP1	10413	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	102098274	102098274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	102098274	C	A	102098274	3	1	718	1	0	0	0	0	1	0	0	0	17478	594	21	4	1280	4	YAP1	11	102098274	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	41211872	102098274	32908242	82	45615											
DDI1	414301	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	103908145	103908145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	103908145	C	T	103908145	3	4	718	1	0	0	0	0	1	0	0	0	4330	884	31	1	597	1	DDI1	11	103908145	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	1809871	103908145	31098371	83	45616											
SLC35F2	54733	broad.mit.edu	37	11	107676203	107676204	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	107676204	-	A	107676203	7	5	718	1	0	1	1	0	0	0	0	0	14602	594	21	0	527	0	SLC35F2	11	107676203	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	3768058	107676203	27330313	84	45617											
EXPH5	23086	broad.mit.edu	37	11	108381019	108381020	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	108381020	-	G	108381019	7	5	718	1	0	1	1	0	0	0	0	0	5324	1580	55	0	758	0	EXPH5	11	108381019	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	704816	108381019	26625497	85	45618											
POU2F3	25833	broad.mit.edu	37	11	120173026	120173026	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	120173026	G	-	120173026	7	5	718	1	0	1	0	1	0	0	0	0	12280	962	34	0	415	0	POU2F3	11	120173026	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	11792007	120173026	14833490	86	45619											
ST14	6768	broad.mit.edu	37	11	130079400	130079401	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	130079401	-	C	130079400	7	5	718	1	0	1	1	0	0	0	0	0	15223	43	2	0	2403	0	ST14	11	130079400	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	9906374	130079400	4927116	87	45620											
E2F7	144455	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	77419483	77419483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	77419483	G	A	77419483	3	1	718	1	0	0	0	0	1	0	0	0	4874	1174	41	2	323	2	E2F7	12	77419483	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10		77419483	56432412	88	45621											
MYBPC1	4604	mdanderson.org;bcgsc.ca	37	12	102043096	102043096	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	102043096	G	T	102043096	4	4	718	1	0	0	0	0	0	1	0	0	10018	1291	45	4	1313	4	MYBPC1	12	102043096	Nonsense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	24623613	102043096	31808799	89	45622											
C1QTNF9B	387911	mdanderson.org	37	13	24465623	24465623	+	Silent	SNP	G	G	A	rs4083570		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	24465623	G	A	24465623	2	1	718	1	0	0	0	0	0	0	0	1	1973	1136	40	1		1	C1QTNF9B	13	24465623	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10		24465623	90704255	90	45623											
FREM2	341640	broad.mit.edu	37	13	39266098	39266098	+	Silent	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	39266098	C	T	39266098	2	4	718	1	0	0	0	0	0	0	0	1	6052	477	17	2		2	FREM2	13	39266098	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	14800475	39266098	75903780	91	45624											
SALL2	6297	broad.mit.edu;mdanderson.org	37	14	21992203	21992203	+	Silent	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	21992203	C	T	21992203	2	4	718	1	0	0	0	0	0	0	0	1	13824	593	21	2		2	SALL2	14	21992203	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10		21992203	85357337	92	45625											
FAM179B	23116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	45513838	45513838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	45513838	G	T	45513838	3	4	718	1	0	0	0	0	1	0	0	0	5510	1275	44	4	3969	4	FAM179B	14	45513838	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	23521635	45513838	61835702	93	45626											
C14orf166	51637	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	14	52458098	52458098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	52458098	T	C	52458098	3	2	718	1	0	0	0	0	1	0	0	0	1758	1493	52	3	131	3	C14orf166	14	52458098	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	6944260	52458098	54891442	94	45627											
ADAM21	8747	mdanderson.org	37	14	70924566	70924566	+	Missense_Mutation	SNP	C	C	G	rs3829452	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	70924566	C	G	70924566	3	3	718	1	0	0	0	0	1	0	0	0	243	710	25	4	352	4	ADAM21	14	70924566	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	18466468	70924566	36424974	95	45628											
TTC7B	145567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	14	91044471	91044471	+	Silent	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	91044471	G	A	91044471	2	1	718	1	0	0	0	0	0	0	0	1	16725	1136	40	1		1	TTC7B	14	91044471	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	20119905	91044471	16305069	96	45629											
GOLGA8A	23015	broad.mit.edu	37	15	34678927	34678927	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	34678927	A	-	34678927	7	5	718	1	0	1	0	1	0	0	0	0	6570	304	11	0	1683	0	GOLGA8A	15	34678927	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10		34678927	67852465	97	45630											
FSIP1	161835	broad.mit.edu	37	15	40056059	40056059	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	40056059	T	-	40056059	7	5	718	1	0	1	0	1	0	0	0	0	6081	1490	52	0	1255	0	FSIP1	15	40056059	Frame_Shift_Del	DEL	T	TCGA-KO-8408-01A-11D-2310-10	5377132	40056059	62475333	98	45631											
EXD1	161829	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	15	41501706	41501706	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	41501706	C	T	41501706	4	4	718	1	0	0	0	0	0	1	0	0	5299	595	21	2	1215	2	EXD1	15	41501706	Nonsense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	1445647	41501706	61029686	99	45632											
MAP1A	4130	broad.mit.edu	37	15	43821988	43821989	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	43821989	-	C	43821988	7	5	718	1	0	1	1	0	0	0	0	0	9234	1290	45	0	8182	0	MAP1A	15	43821988	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	2320282	43821988	58709404	100	45633											
SNX1	6642	broad.mit.edu	37	15	64422451	64422451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	64422451	G	T	64422451	3	4	718	1	0	0	0	0	1	0	0	0	14893	1261	44	4	984	4	SNX1	15	64422451	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	20600463	64422451	38108941	101	45634											
IQCH	64799	mdanderson.org;bcgsc.ca	37	15	67652191	67652191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	67652191	A	G	67652191	3	3	718	1	0	0	0	0	1	0	0	0	7818	72	3	3	879	3	IQCH	15	67652191	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	3229740	67652191	34879201	102	45635											
GOLGA6B	55889	broad.mit.edu;mdanderson.org	37	15	72954855	72954855	+	Silent	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	72954855	G	A	72954855	2	1	718	1	0	0	0	0	0	0	0	1	6565	962	34	2		2	GOLGA6B	15	72954855	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	5302664	72954855	29576537	103	45636											
SYNM	23336	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	99671287	99671287	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	99671287	A	T	99671287	4	4	718	1	0	0	0	0	0	1	0	0	15467	247	9	5	2735	5	SYNM	15	99671287	Nonsense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	26716432	99671287	2860105	104	45637											
VASN	114990	mdanderson.org	37	16	4431373	4431373	+	Silent	SNP	G	G	C	rs740374	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	4431373	G	C	4431373	2	2	718	1	0	0	0	0	0	0	0	1	17139	1074	38	4		4	VASN	16	4431373	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10		4431373	85923380	105	45638											
XPO6	23214	broad.mit.edu	37	16	28128693	28128693	+	Silent	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	28128693	G	A	28128693	2	1	718	1	0	0	0	0	0	0	0	1	17460	1049	37	1		1	XPO6	16	28128693	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	23697320	28128693	62226060	106	45639											
RBL2	5934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	53493465	53493465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	53493465	C	T	53493465	3	4	718	1	0	0	0	0	1	0	0	0	13123	884	31	1	1316	1	RBL2	16	53493465	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	25364772	53493465	36861288	107	45640											
GPR56	9289	broad.mit.edu	37	16	57697474	57697474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	57697474	A	C	57697474	3	2	718	1	0	0	0	0	1	0	0	0	6707	159	6	5	2127	5	GPR56	16	57697474	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	4204009	57697474	32657279	108	45641											
MMP15	4324	broad.mit.edu	37	16	58075623	58075624	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	58075624	CA	-	58075623	7	5	718	1	0	1	0	1	0	0	0	0	9661	594	21	0	1035	0	MMP15	16	58075623	Frame_Shift_Del	DEL	CA	TCGA-KO-8408-01A-11D-2310-10	378149	58075623	32279130	109	45642	654	2									
MMP15	4324	broad.mit.edu	37	16	58075631	58075631	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	58075631	G	-	58075631	7	5	718	1	0	1	0	1	0	0	0	0	9661	1000	35	0	1043	0	MMP15	16	58075631	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	8	58075631	32279122	110	45643	654	2									
TP53	7157	broad.mit.edu	37	17	7578176	7578176	+	Splice_Site	SNP	C	C	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	7578176	C	A	7578176	5	1	718	1	0	0	0	0	0	0	1	0	16393	521	18	4	621	4	TP53	17	7578176	Splice_Site	SNP	C	TCGA-KO-8408-01A-11D-2310-10		7578176	73617034	111	45644											
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7579716	7579716	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	7579716	G	-	7579716	7	5	718	1	0	1	0	1	0	0	0	0	16393	1000	35	0	1226	0	TP53	17	7579716	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	1540	7579716	73615494	112	45645	655	2									
TP53	7157	bcgsc.ca	37	17	7579717	7579717	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	7579717	G	-	7579717	7	5	718	1	0	1	0	1	0	0	0	0	16393	1174	41	0	1227	0	TP53	17	7579717	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	1	7579717	73615493	113	45646	655	2									
KRT38	8687	mdanderson.org	37	17	39595537	39595537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	39595537	G	A	39595537	3	1	718	1	0	0	0	0	1	0	0	0	8482	1087	38	1	740	1	KRT38	17	39595537	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	32015820	39595537	41599673	114	45647											
KRT32	3882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	39623194	39623194	+	Silent	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	39623194	G	A	39623194	2	1	718	1	0	0	0	0	0	0	0	1	8475	1164	41	2		2	KRT32	17	39623194	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	27657	39623194	41572016	115	45648											
KRT19	3880	mdanderson.org	37	17	39684321	39684321	+	Missense_Mutation	SNP	G	G	C	rs4602	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	39684321	G	C	39684321	3	2	718	1	0	0	0	0	1	0	0	0	8463	1203	42	4	1047	4	KRT19	17	39684321	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	61127	39684321	41510889	116	45649											
ACLY	47	hgsc.bcm.edu;ucsc.edu	37	17	40049426	40049426	+	Silent	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	40049426	T	C	40049426	2	2	718	1	0	0	0	0	0	0	0	1	143	1797	62	3		3	ACLY	17	40049426	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10	365105	40049426	41145784	117	45650											
CDC27	996	mdanderson.org	37	17	45234650	45234650	+	Silent	SNP	A	A	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	45234650	A	G	45234650	2	3	718	1	0	0	0	0	0	0	0	1	3068	40	2	3		3	CDC27	17	45234650	Silent	SNP	A	TCGA-KO-8408-01A-11D-2310-10	5185224	45234650	35960560	118	45651											
ZNF516	9658	broad.mit.edu	37	18	74153725	74153726	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	74153726	-	C	74153725	7	5	718	1	0	1	1	0	0	0	0	0	17972	1551	54	0	2226	0	ZNF516	18	74153725	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10		74153725	3923523	119	45652											
ABCA7	10347	mdanderson.org	37	19	1047002	1047002	+	Silent	SNP	A	A	G	rs3752234	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	1047002	A	G	1047002	2	3	718	1	0	0	0	0	0	0	0	1	37	146	6	3		3	ABCA7	19	1047002	Silent	SNP	A	TCGA-KO-8408-01A-11D-2310-10		1047002	58081981	120	45653											
HMHA1	23526	mdanderson.org	37	19	1081617	1081617	+	Silent	SNP	A	A	G	rs10404947	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	1081617	A	G	1081617	2	3	718	1	0	0	0	0	0	0	0	1	7247	69	3	3		3	HMHA1	19	1081617	Silent	SNP	A	TCGA-KO-8408-01A-11D-2310-10	34615	1081617	58047366	121	45654											
ADAT3	113179	mdanderson.org	37	19	1912251	1912251	+	Missense_Mutation	SNP	A	A	G	rs150715312	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	1912251	A	G	1912251	3	3	718	1	0	0	0	0	1	0	0	0	286	131	5	3	159	3	ADAT3	19	1912251	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	830634	1912251	57216732	122	45655											
ZNRF4	148066	mdanderson.org	37	19	5455971	5455971	+	Missense_Mutation	SNP	G	G	T	rs8103406	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	5455971	G	T	5455971	3	4	718	1	0	0	0	0	1	0	0	0	18226	1087	38	4	471	4	ZNRF4	19	5455971	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	3543720	5455971	53673012	123	45656	656	2									
ZNRF4	148066	mdanderson.org	37	19	5455978	5455978	+	Missense_Mutation	SNP	T	T	C	rs8107825	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	5455978	T	C	5455978	3	2	718	1	0	0	0	0	1	0	0	0	18226	1696	59	3	478	3	ZNRF4	19	5455978	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	7	5455978	53673005	124	45657	656	2									
PNPLA6	10908	mdanderson.org	37	19	7615903	7615903	+	Silent	SNP	G	G	A	rs8107538		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	7615903	G	A	7615903	2	1	718	1	0	0	0	0	0	0	0	1	12176	1074	38	1		1	PNPLA6	19	7615903	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	2159925	7615903	51513080	125	45658											
ZNF709	163051	broad.mit.edu	37	19	12575585	12575585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	12575585	C	T	12575585	3	4	718	1	0	0	0	0	1	0	0	0	18125	884	31	1	778	1	ZNF709	19	12575585	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	4959682	12575585	46553398	126	45659											
CPAMD8	27151	hgsc.bcm.edu;ucsc.edu	37	19	17088187	17088187	+	Silent	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	17088187	G	A	17088187	2	1	718	1	0	0	0	0	0	0	0	1	3797	1049	37	1		1	CPAMD8	19	17088187	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	4512602	17088187	42040796	127	45660											
ZNF676	163223	mdanderson.org	37	19	22363448	22363448	+	Silent	SNP	A	A	T	rs200452805		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	22363448	A	T	22363448	2	4	718	1	0	0	0	0	0	0	0	1	18095	358	13	5		5	ZNF676	19	22363448	Silent	SNP	A	TCGA-KO-8408-01A-11D-2310-10	5275261	22363448	36765535	128	45661											
FFAR1	2864	mdanderson.org	37	19	35843086	35843086	+	Missense_Mutation	SNP	G	G	A	rs2301151	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	35843086	G	A	35843086	3	1	718	1	0	0	0	0	1	0	0	0	5834	1087	38	1	634	1	FFAR1	19	35843086	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	13479638	35843086	23285897	129	45662											
RYR1	6261	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	38946146	38946146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	38946146	C	G	38946146	3	3	718	1	0	0	0	0	1	0	0	0	13781	564	20	4	1690	4	RYR1	19	38946146	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	3103060	38946146	20182837	130	45663											
NFKBIB	4793	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	39398202	39398202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	39398202	G	A	39398202	3	1	718	1	0	0	0	0	1	0	0	0	10385	1087	38	1	890	1	NFKBIB	19	39398202	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	452056	39398202	19730781	131	45664											
ZNF45	7596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	44418134	44418134	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	44418134	G	C	44418134	4	2	718	1	0	0	0	0	0	1	0	0	17933	1294	45	4	598	4	ZNF45	19	44418134	Nonsense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	5019932	44418134	14710849	132	45665											
RTN2	6253	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	45991752	45991752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	45991752	G	T	45991752	3	4	718	1	0	0	0	0	1	0	0	0	13739	1232	43	4	175	4	RTN2	19	45991752	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	1573618	45991752	13137231	133	45666											
PLEKHA4	57664	broad.mit.edu	37	19	49340604	49340605	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	49340605	-	G	49340604	7	5	718	1	0	1	1	0	0	0	0	0	12065	188	7	0	61	0	PLEKHA4	19	49340604	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	3348852	49340604	9788379	134	45667											
LILRA6	79168	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	54744177	54744177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	54744177	T	A	54744177	3	1	718	1	0	0	0	0	1	0	0	0	8796	1580	55	5	226	5	LILRA6	19	54744177	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	5403573	54744177	4384806	135	45668											
CPXM1	56265	broad.mit.edu;mdanderson.org	37	20	2777897	2777897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	2777897	G	A	2777897	3	1	718	1	0	0	0	0	1	0	0	0	3839	1261	44	2	1467	2	CPXM1	20	2777897	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10		2777897	60247623	136	45669											
BTBD3	22903	broad.mit.edu;mdanderson.org;bcgsc.ca	37	20	11903397	11903397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	G	11903397	A	G	11903397	3	3	718	1	0	0	0	0	1	0	0	0	1546	275	10	3	666	3	BTBD3	20	11903397	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	9125500	11903397	51122123	137	45670											
RBBP9	10741	broad.mit.edu	37	20	18477730	18477731	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	18477731	-	C	18477730	7	5	718	1	0	1	1	0	0	0	0	0	13119	1792	62	0	498	0	RBBP9	20	18477730	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	6574333	18477730	44547790	138	45671											
MYLK2	85366	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	20	30408125	30408125	+	Silent	SNP	C	C	T	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	30408125	C	T	30408125	2	4	718	1	0	0	0	0	0	0	0	1	10064	755	27	1		1	MYLK2	20	30408125	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	11930395	30408125	32617395	139	45672											
SEMG2	6407	mdanderson.org;bcgsc.ca	37	20	43851703	43851703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	43851703	G	A	43851703	3	1	718	1	0	0	0	0	1	0	0	0	14058	1058	37	1	1436	1	SEMG2	20	43851703	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	13443578	43851703	19173817	140	45673											
PREX1	57580	broad.mit.edu	37	20	47307517	47307518	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	47307518	-	C	47307517	7	5	718	1	0	1	1	0	0	0	0	0	12486	1435	50	0	3953	0	PREX1	20	47307517	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	3455814	47307517	15718003	141	45674											
DIDO1	11083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	20	61513562	61513562	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	61513562	G	C	61513562	3	2	718	1	0	0	0	0	1	0	0	0	4524	1319	46	4	2980	4	DIDO1	20	61513562	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	14206045	61513562	1511958	142	45675											
ZBTB46	140685	broad.mit.edu;ucsc.edu	37	20	62384061	62384061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	62384061	T	C	62384061	3	2	718	1	0	0	0	0	1	0	0	0	17559	1551	54	3	401	3	ZBTB46	20	62384061	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	870499	62384061	641459	143	45676											
HIRA	7290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	22	19363305	19363305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	19363305	T	C	19363305	3	2	718	1	0	0	0	0	1	0	0	0	7127	1638	57	3	1473	3	HIRA	22	19363305	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10		19363305	31941261	144	45677											
YDJC	150223	mdanderson.org	37	22	21982892	21982892	+	Missense_Mutation	SNP	C	C	T	rs2298428	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	T	21982892	C	T	21982892	3	4	718	1	0	0	0	0	1	0	0	0	17483	768	27	1	188	1	YDJC	22	21982892	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	2619587	21982892	29321674	145	45678											
RHBDD3	25807	broad.mit.edu	37	22	29661514	29661515	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	29661515	-	C	29661514	7	5	718	1	0	1	1	0	0	0	0	0	13331	1190	42	0	1078	0	RHBDD3	22	29661514	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	7678622	29661514	21643052	146	45679											
CSF2RB	1439	broad.mit.edu;mdanderson.org;bcgsc.ca	37	22	37326788	37326788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	37326788	G	A	37326788	3	1	718	1	0	0	0	0	1	0	0	0	3937	1145	40	1	954	1	CSF2RB	22	37326788	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	7665274	37326788	13977778	147	45680											
CXorf21	80231	broad.mit.edu;mdanderson.org	37	X	30577710	30577710	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	30577710	G	C	30577710	3	2	718	1	0	0	0	0	1	0	0	0	4103	1299	45	4	146	4	CXorf21	23	30577710	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10		30577710	124692850	148	45681											
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76937378	76937378	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	76937378	A	-	76937378	7	5	718	1	0	1	0	1	0	0	0	0	1208	304	11	0	4216	0	ATRX	23	76937378	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10	46359668	76937378	78333182	149	45682	657	2									
ATRX	546	bcgsc.ca	37	X	76937379	76937379	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	-	76937379	A	-	76937379	7	5	718	1	0	1	0	1	0	0	0	0	1208	1020	36	0	4217	0	ATRX	23	76937379	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10	1	76937379	78333181	150	45683	657	2									
ATP7A	538	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	77275864	77275864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	77275864	T	C	77275864	3	2	718	1	0	0	0	0	1	0	0	0	1190	1667	58	3	2796	3	ATP7A	23	77275864	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	338485	77275864	77994696	151	45684											
SYTL4	94121	broad.mit.edu	37	X	99942167	99942168	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	A	99942168	-	A	99942167	7	5	718	1	0	1	1	0	0	0	0	0	15497	710	25	0	962	0	SYTL4	23	99942167	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	22666303	99942167	55328393	152	45685											
HCFC1	3054	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	153230057	153230057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd	C	153230057	T	C	153230057	3	2	718	1	0	0	0	0	1	0	0	0	6998	1841	64	3	5893	3	HCFC1	23	153230057	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	53287890	153230057	2040503	153	45686											
ARHGEF10L	55160	mdanderson.org	37	1	18023690	18023690	+	Missense_Mutation	SNP	A	A	G	rs2270976	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	18023690	A	G	18023690	3	3	719	1	0	0	0	0	1	0	0	0	895	217	8	3	3765	3	ARHGEF10L	1	18023690	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10		18023690	231226931	1	45687											
KIF17	57576	broad.mit.edu;mdanderson.org	37	1	21014271	21014271	+	Silent	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	21014271	C	T	21014271	2	4	719	1	0	0	0	0	0	0	0	1	8286	680	24	2		2	KIF17	1	21014271	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	2990581	21014271	228236350	2	45688											
RBMXL1	494115	mdanderson.org	37	1	89449141	89449141	+	Silent	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	89449141	A	G	89449141	2	3	719	1	0	0	0	0	0	0	0	1	13166	59	3	3		3	RBMXL1	1	89449141	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	68434870	89449141	159801480	3	45689											
VANGL1	81839	broad.mit.edu	37	1	116226629	116226630	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	116226630	-	A	116226629	7	5	719	1	0	1	1	0	0	0	0	0	17131	564	20	0	1029	0	VANGL1	1	116226629	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	26777488	116226629	133023992	4	45690											
IGSF3	3321	mdanderson.org	37	1	117158772	117158772	+	Silent	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	117158772	C	T	117158772	2	4	719	1	0	0	0	0	0	0	0	1	7608	564	20	2		2	IGSF3	1	117158772	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	932143	117158772	132091849	5	45691											
NBPF14	25832	mdanderson.org	37	1	148004733	148004733	+	Missense_Mutation	SNP	T	T	C	rs78149412	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	148004733	T	C	148004733	3	2	719	1	0	0	0	0	1	0	0	0	10201	1406	49	3	188	3	NBPF14	1	148004733	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	30845961	148004733	101245888	6	45692											
PKLR	5313	broad.mit.edu	37	1	155270047	155270048	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	155270048	-	C	155270047	7	5	719	1	0	1	1	0	0	0	0	0	11983	1203	42	0	1639	0	PKLR	1	155270047	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	7265314	155270047	93980574	7	45693											
HDGF	3068	ucsc.edu	37	1	156721154	156721154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	156721154	T	G	156721154	3	3	719	1	0	0	0	0	1	0	0	0	7025	1638	57	5	678	5	HDGF	1	156721154	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	1451107	156721154	92529467	8	45694											
C1orf198	84886	ucsc.edu	37	1	231004156	231004156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	231004156	A	G	231004156	3	3	719	1	0	0	0	0	1	0	0	0	2028	275	10	3	896	3	C1orf198	1	231004156	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	74283002	231004156	18246465	9	45695											
GTF3C2	2976	broad.mit.edu;ucsc.edu	37	2	27550102	27550102	+	Silent	SNP	T	T	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	27550102	T	C	27550102	2	2	719	1	0	0	0	0	0	0	0	1	6880	1551	54	3		3	GTF3C2	2	27550102	Silent	SNP	T	TCGA-KO-8409-01A-11D-2310-10		27550102	215649271	10	45696											
ALK	238	broad.mit.edu;mdanderson.org;bcgsc.ca	37	2	29416536	29416536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	29416536	C	T	29416536	3	4	719	1	0	0	0	0	1	0	0	0	525	681	24	2	449	2	ALK	2	29416536	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	1866434	29416536	213782837	11	45697											
IMMT	10989	broad.mit.edu	37	2	86374840	86374840	+	Silent	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	86374840	C	T	86374840	2	4	719	1	0	0	0	0	0	0	0	1	7725	564	20	2		2	IMMT	2	86374840	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	56958304	86374840	156824533	12	45698											
PCDP1	0	ucsc.edu	37	2	120397411	120397411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	120397411	T	C	120397411	3	2	719	1	0	0	0	0	1	0	0	0	11579	1551	54	3	1380	3	PCDP1	2	120397411	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	34022571	120397411	122801962	13	45699											
POTEE	445582	broad.mit.edu	37	2	132021077	132021078	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	132021078	-	A	132021077	7	5	719	1	0	1	1	0	0	0	0	0	12271	1277	45	0	2107	0	POTEE	2	132021077	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	11623666	132021077	111178296	14	45700											
UBR3	130507	mdanderson.org	37	2	170684548	170684548	+	Silent	SNP	G	G	A	rs79036304	byfrequency;by1000genomes	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	170684548	G	A	170684548	2	1	719	1	0	0	0	0	0	0	0	1	16915	1277	45	2		2	UBR3	2	170684548	Silent	SNP	G	TCGA-KO-8409-01A-11D-2310-10	38663471	170684548	72514825	15	45701											
SATB2	23314	broad.mit.edu	37	2	200136984	200136984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	200136984	C	T	200136984	3	4	719	1	0	0	0	0	1	0	0	0	13867	864	30	2	53	2	SATB2	2	200136984	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	29452436	200136984	43062389	16	45702											
NCL	4691	broad.mit.edu	37	2	232322444	232322444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	232322444	C	T	232322444	3	4	719	1	0	0	0	0	1	0	0	0	10233	922	32	2	799	2	NCL	2	232322444	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	32185460	232322444	10876929	17	45703											
SMARCC1	6599	bcgsc.ca	37	3	47651783	47651783	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	47651783	C	G	47651783	3	3	719	1	0	0	0	0	1	0	0	0	14788	768	27	4	513	4	SMARCC1	3	47651783	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10		47651783	150370647	18	45704											
TSC22D2	9819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	150127405	150127405	+	Silent	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	150127405	C	T	150127405	2	4	719	1	0	0	0	0	0	0	0	1	16620	680	24	2		2	TSC22D2	3	150127405	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	102475622	150127405	47895025	19	45705											
MUC4	4585	mdanderson.org	37	3	195506425	195506425	+	Missense_Mutation	SNP	A	A	G	rs201051713		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	195506425	A	G	195506425	3	3	719	1	0	0	0	0	1	0	0	0	9985	391	14	3		3	MUC4	3	195506425	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	45379020	195506425	2516005	20	45706			1	147		3	3	3533	N	G_A	6.457688e-05
MUC4	4585	mdanderson.org	37	3	195506450	195506450	+	Missense_Mutation	SNP	G	G	C	rs201981197		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	195506450	G	C	195506450	3	2	719	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195506450	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	25	195506450	2515980	21	45707			1	147		3	3	3533	N	G_A	6.457688e-05
MUC4	4585	broad.mit.edu	37	3	195509957	195509957	+	Missense_Mutation	SNP	A	A	G	rs201699932	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	195509957	A	G	195509957	3	3	719	1	0	0	0	0	1	0	0	0	9985	304	11	3		3	MUC4	3	195509957	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	3507	195509957	2512473	22	45708			1	147		3	3	3533	N	G_A	6.457688e-05
CPZ	8532	mdanderson.org	37	4	8594574	8594574	+	Missense_Mutation	SNP	T	T	C	rs2302583	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	8594574	T	C	8594574	3	2	719	1	0	0	0	0	1	0	0	0	3841	1580	55	3	16	3	CPZ	4	8594574	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10		8594574	182559702	23	45709	658	2									
CPZ	8532	mdanderson.org	37	4	8594577	8594577	+	Missense_Mutation	SNP	C	C	T	rs34964084	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	8594577	C	T	8594577	3	4	719	1	0	0	0	0	1	0	0	0	3841	652	23	1	19	1	CPZ	4	8594577	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	3	8594577	182559699	24	45710	658	2									
G3BP2	9908	broad.mit.edu	37	4	76570758	76570758	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	-	76570758	A	-	76570758	7	5	719	1	0	1	0	1	0	0	0	0	6149	146	6	0	147	0	G3BP2	4	76570758	Frame_Shift_Del	DEL	A	TCGA-KO-8409-01A-11D-2310-10	67976181	76570758	114583518	25	45711											
ANTXR2	118429	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	4	80954628	80954628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	80954628	G	A	80954628	3	1	719	1	0	0	0	0	1	0	0	0	712	1145	40	1	750	1	ANTXR2	4	80954628	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	4383870	80954628	110199648	26	45712											
PDHA2	5161	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	96761794	96761794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	96761794	G	A	96761794	3	1	719	1	0	0	0	0	1	0	0	0	11672	1145	40	1	495	1	PDHA2	4	96761794	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	15807166	96761794	94392482	27	45713											
NEUROG2	63973	mdanderson.org	37	4	113436044	113436044	+	Silent	SNP	T	T	G	rs901474	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	113436044	T	G	113436044	2	3	719	1	0	0	0	0	0	0	0	1	10360	1538	54	5		5	NEUROG2	4	113436044	Silent	SNP	T	TCGA-KO-8409-01A-11D-2310-10	16674250	113436044	77718232	28	45714											
FRG1	2483	mdanderson.org	37	4	190873379	190873379	+	Missense_Mutation	SNP	A	A	G	rs1803592		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	190873379	A	G	190873379	3	3	719	1	0	0	0	0	1	0	0	0	6053	363	13	3	206	3	FRG1	4	190873379	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	77437335	190873379	280897	29	45715											
RNF145	153830	mdanderson.org	37	5	158630641	158630641	+	Silent	SNP	C	C	T	rs74841177		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	158630641	C	T	158630641	2	4	719	1	0	0	0	0	0	0	0	1	13460	912	32	2		2	RNF145	5	158630641	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10		158630641	22284619	30	45716											
GABRB2	2561	hgsc.bcm.edu	37	5	160886707	160886709	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	-	160886709	CTT	-	160886707	7	5	719	1	0	1	0	1	0	0	0	0	6174	564	20	0	1185	0	GABRB2	5	160886707	In_Frame_Del	DEL	CTT	TCGA-KO-8409-01A-11D-2310-10	2256066	160886707	20028553	31	45717	659	2									
GABRB2	2561	bcgsc.ca	37	5	160886708	160886710	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	-	160886710	CTT	-	160886708	7	5	719	1	0	1	0	1	0	0	0	0	6174	1609	56	0	1186	0	GABRB2	5	160886708	In_Frame_Del	DEL	CTT	TCGA-KO-8409-01A-11D-2310-10	1	160886708	20028552	32	45718	659	2									
CAP2	10486	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	6	17507412	17507412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	17507412	G	A	17507412	3	1	719	1	0	0	0	0	1	0	0	0	2622	1087	38	1	327	1	CAP2	6	17507412	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10		17507412	153607655	33	45719											
KIAA0319	9856	mdanderson.org	37	6	24551664	24551664	+	Missense_Mutation	SNP	T	T	C	rs807534	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	24551664	T	C	24551664	3	2	719	1	0	0	0	0	1	0	0	0	8175	1406	49	3	188	3	KIAA0319	6	24551664	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	7044252	24551664	146563403	34	45720											
OR2W1	26692	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	6	29012270	29012270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	29012270	G	A	29012270	3	1	719	1	0	0	0	0	1	0	0	0	11039	1145	40	1	283	1	OR2W1	6	29012270	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	4460606	29012270	142102797	35	45721											
OR2J3	442186	mdanderson.org	37	6	29080088	29080088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	29080088	C	T	29080088	3	4	719	1	0	0	0	0	1	0	0	0	11011	623	22	2	423	2	OR2J3	6	29080088	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	67818	29080088	142034979	36	45722											
HLA-C	3107	mdanderson.org	37	6	31239006	31239006	+	Missense_Mutation	SNP	G	G	T	rs76907552		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	31239006	G	T	31239006	3	4	719	1	0	0	0	0	1	0	0	0	7204	1087	38	4	661	4	HLA-C	6	31239006	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	2158918	31239006	139876061	37	45723											
RIMS1	22999	broad.mit.edu	37	6	73102466	73102466	+	Silent	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	73102466	A	G	73102466	2	3	719	1	0	0	0	0	0	0	0	1	13380	262	10	3		3	RIMS1	6	73102466	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	41863460	73102466	98012601	38	45724											
UNC93A	54346	mdanderson.org	37	6	167728900	167728900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	167728900	T	C	167728900	3	2	719	1	0	0	0	0	1	0	0	0	17008	1667	58	3	1364	3	UNC93A	6	167728900	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	94626434	167728900	3386167	39	45725											
AVL9	23080	broad.mit.edu	37	7	32620439	32620439	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	-	32620439	A	-	32620439	7	5	719	1	0	1	0	1	0	0	0	0	1228	131	5	0	1826	0	AVL9	7	32620439	Frame_Shift_Del	DEL	A	TCGA-KO-8409-01A-11D-2310-10		32620439	126518224	40	45726											
SPDYE1	285955	broad.mit.edu	37	7	44046997	44046997	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	-	44046997	A	-	44046997	7	5	719	1	0	1	0	1	0	0	0	0	15041	246	9	0	781	0	SPDYE1	7	44046997	Frame_Shift_Del	DEL	A	TCGA-KO-8409-01A-11D-2310-10	11426558	44046997	115091666	41	45727											
TMEM120A	83862	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	75617798	75617798	+	Silent	SNP	G	G	C	rs114564646	by1000genomes;alternate_allele	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	75617798	G	C	75617798	2	2	719	1	0	0	0	0	0	0	0	1	16045	929	33	4		4	TMEM120A	7	75617798	Silent	SNP	G	TCGA-KO-8409-01A-11D-2310-10	31570801	75617798	83520865	42	45728											
ADAM22	53616	mdanderson.org	37	7	87564497	87564497	+	Missense_Mutation	SNP	C	C	G	rs2279542	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	87564497	C	G	87564497	3	3	719	1	0	0	0	0	1	0	0	0	244	652	23	4	248	4	ADAM22	7	87564497	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	11946699	87564497	71574166	43	45729											
SLC13A1	6561	bcgsc.ca	37	7	122759248	122759248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	122759248	A	G	122759248	3	3	719	1	0	0	0	0	1	0	0	0	14404	246	9	3	400	3	SLC13A1	7	122759248	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	35194751	122759248	36379415	44	45730											
TNFRSF10B	8795	mdanderson.org	37	8	22926313	22926313	+	Missense_Mutation	SNP	G	G	A	rs1129424	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	22926313	G	A	22926313	3	1	719	1	0	0	0	0	1	0	0	0	16293	1232	43	2	1263	2	TNFRSF10B	8	22926313	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10		22926313	123437709	45	45731											
SLC20A2	6575	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	8	42294728	42294728	+	Silent	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	42294728	C	T	42294728	2	4	719	1	0	0	0	0	0	0	0	1	14452	871	31	1		1	SLC20A2	8	42294728	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	19368415	42294728	104069294	46	45732											
ZC3H3	23144	bcgsc.ca	37	8	144522319	144522319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	144522319	A	G	144522319	3	3	719	1	0	0	0	0	1	0	0	0	17581	304	11	3	147	3	ZC3H3	8	144522319	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	102227591	144522319	1841703	47	45733											
DMRTA1	63951	broad.mit.edu	37	9	22451467	22451468	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	22451468	-	A	22451467	7	5	719	1	0	1	1	0	0	0	0	0	4590	595	21	0	1078	0	DMRTA1	9	22451467	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		22451467	118761964	48	45734											
KIF24	347240	broad.mit.edu	37	9	34257343	34257344	+	Frame_Shift_Ins	INS	-	-	GGGG	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	GGGG	34257344	-	GGGG	34257343	7	5	719	1	0	1	1	0	0	0	0	0	8299	755	27	0	1856	0	KIF24	9	34257343	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	11805876	34257343	106956088	49	45735											
COL5A1	1289	broad.mit.edu	37	9	137645718	137645719	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	137645719	-	G	137645718	7	5	719	1	0	1	1	0	0	0	0	0	3698	1821	63	0	1800	0	COL5A1	9	137645718	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	103388375	137645718	3567713	50	45736											
DPP7	29952	hgsc.bcm.edu	37	9	140008471	140008471	+	Missense_Mutation	SNP	C	C	T	rs138978681		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	140008471	C	T	140008471	3	4	719	1	0	0	0	0	1	0	0	0	4733	652	23	1	1187	1	DPP7	9	140008471	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	2362753	140008471	1204960	51	45737											
GPR158	57512	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	25887315	25887315	+	Silent	SNP	C	C	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	25887315	C	G	25887315	2	3	719	1	0	0	0	0	0	0	0	1	6670	610	22	4		4	GPR158	10	25887315	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10		25887315	109647432	52	45738											
MUC6	4588	mdanderson.org	37	11	1016885	1016885	+	Silent	SNP	A	A	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	1016885	A	C	1016885	2	2	719	1	0	0	0	0	0	0	0	1	9987	407	15	5		5	MUC6	11	1016885	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10		1016885	133989631	53	45739											
MUC6	4588	mdanderson.org	37	11	1018341	1018341	+	Missense_Mutation	SNP	G	G	A	rs79748612		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	1018341	G	A	1018341	3	1	719	1	0	0	0	0	1	0	0	0	9987	1348	47	2	2871	2	MUC6	11	1018341	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	1456	1018341	133988175	54	45740											
MUC5B	727897	broad.mit.edu	37	11	1260210	1260211	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	1260211	-	C	1260210	7	5	719	1	0	1	1	0	0	0	0	0	9986	1319	46	0	3518	0	MUC5B	11	1260210	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	241869	1260210	133746306	55	45741											
UEVLD	55293	mdanderson.org	37	11	18579859	18579859	+	Missense_Mutation	SNP	C	C	A	rs199752573		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	18579859	C	A	18579859	3	1	719	1	0	0	0	0	1	0	0	0	16945	478	17	4	808	4	UEVLD	11	18579859	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	17319649	18579859	116426657	56	45742											
ANO5	203859	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	11	22291963	22291963	+	Silent	SNP	G	G	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	22291963	G	A	22291963	2	1	719	1	0	0	0	0	0	0	0	1	700	1190	42	2		2	ANO5	11	22291963	Silent	SNP	G	TCGA-KO-8409-01A-11D-2310-10	3712104	22291963	112714553	57	45743											
ANO3	63982	broad.mit.edu;mdanderson.org	37	11	26465370	26465370	+	Silent	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	26465370	C	T	26465370	2	4	719	1	0	0	0	0	0	0	0	1	698	767	27	1		1	ANO3	11	26465370	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	4173407	26465370	108541146	58	45744											
KIF18A	81930	mdanderson.org	37	11	28119446	28119446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	28119446	G	A	28119446	3	1	719	1	0	0	0	0	1	0	0	0	8287	1058	37	1	2711	1	KIF18A	11	28119446	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	1654076	28119446	106887070	59	45745											
C11orf83	790955	bcgsc.ca	37	11	62439458	62439458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	62439458	G	A	62439458	3	1	719	1	0	0	0	0	1	0	0	0	1668	1175	41	2	160	2	C11orf83	11	62439458	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	34320012	62439458	72567058	60	45746											
ORAOV1	220064	broad.mit.edu	37	11	69482297	69482297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	69482297	A	G	69482297	3	3	719	1	0	0	0	0	1	0	0	0	11267	72	3	3	13	3	ORAOV1	11	69482297	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	7042839	69482297	65524219	61	45747											
TRPC6	7225	mdanderson.org	37	11	101454192	101454192	+	Missense_Mutation	SNP	G	G	A	rs3802829		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	101454192	G	A	101454192	3	1	719	1	0	0	0	0	1	0	0	0	16595	1174	41	2	2804	2	TRPC6	11	101454192	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	31971895	101454192	33552324	62	45748											
TAS2R50	259296	broad.mit.edu;mdanderson.org;bcgsc.ca	37	12	11139408	11139408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	11139408	C	A	11139408	3	1	719	1	0	0	0	0	1	0	0	0	15596	478	17	4	851	4	TAS2R50	12	11139408	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10		11139408	122712487	63	45749											
MYF6	4618	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	81102660	81102660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	81102660	G	A	81102660	3	1	719	1	0	0	0	0	1	0	0	0	10035	1058	37	1	660	1	MYF6	12	81102660	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	69963252	81102660	52749235	64	45750											
PSPC1	55269	mdanderson.org	37	13	20279923	20279923	+	Missense_Mutation	SNP	A	A	G	rs555759	bycluster	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	20279923	A	G	20279923	3	3	719	1	0	0	0	0	1	0	0	0	12726	217	8	3	314	3	PSPC1	13	20279923	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10		20279923	94889955	65	45751											
POTEG	404785	broad.mit.edu	37	14	19553498	19553499	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	19553499	-	G	19553498	7	5	719	1	0	1	1	0	0	0	0	0	12273	1696	59	0	84	0	POTEG	14	19553498	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		19553498	87796042	66	45752											
LRFN5	145581	broad.mit.edu	37	14	42356435	42356435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	42356435	A	G	42356435	3	3	719	1	0	0	0	0	1	0	0	0	8948	275	10	3	609	3	LRFN5	14	42356435	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	22802937	42356435	64993105	67	45753											
YLPM1	56252	broad.mit.edu	37	14	75248591	75248592	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	75248592	-	C	75248591	7	5	719	1	0	1	1	0	0	0	0	0	17498	1538	54	0	1859	0	YLPM1	14	75248591	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	32892156	75248591	32100949	68	45754											
KIAA1737	85457	hgsc.bcm.edu	37	14	77580242	77580243	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	77580243	-	C	77580242	7	5	719	1	0	1	1	0	0	0	0	0	8262	1783	62	0	791	0	KIAA1737	14	77580242	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	2331651	77580242	29769298	69	45755											
PPP1R13B	23368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	104205041	104205041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	104205041	C	T	104205041	3	4	719	1	0	0	0	0	1	0	0	0	12367	536	19	1	449	1	PPP1R13B	14	104205041	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	26624799	104205041	3144499	70	45756											
PLA2G4D	283748	broad.mit.edu	37	15	42362217	42362218	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	42362218	-	G	42362217	7	5	719	1	0	1	1	0	0	0	0	0	12011	1580	55	0	344	0	PLA2G4D	15	42362217	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		42362217	60169175	71	45757											
C15orf48	84419	broad.mit.edu	37	15	45723237	45723238	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	45723238	-	G	45723237	7	5	719	1	0	1	1	0	0	0	0	0	1801	1683	59	0	81	0	C15orf48	15	45723237	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	3361020	45723237	56808155	72	45758											
FAM154B	283726	broad.mit.edu;mdanderson.org;bcgsc.ca	37	15	82564044	82564044	+	Missense_Mutation	SNP	C	C	T	rs150372195		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	82564044	C	T	82564044	3	4	719	1	0	0	0	0	1	0	0	0	5468	527	19	1	160	1	FAM154B	15	82564044	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	36840807	82564044	19967348	73	45759											
ZSCAN10	84891	broad.mit.edu	37	16	3140487	3140488	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	3140488	-	C	3140487	7	5	719	1	0	1	1	0	0	0	0	0	18239	1190	42	0	1398	0	ZSCAN10	16	3140487	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		3140487	87214266	74	45760											
EARS2	124454	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	23546345	23546345	+	Silent	SNP	C	C	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	23546345	C	A	23546345	2	1	719	1	0	0	0	0	0	0	0	1	4880	697	25	4		4	EARS2	16	23546345	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	20405858	23546345	66808408	75	45761											
BCAR1	9564	mdanderson.org	37	16	75269477	75269477	+	Silent	SNP	A	A	C	rs61729595	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	75269477	A	C	75269477	2	2	719	1	0	0	0	0	0	0	0	1	1348	175	7	5		5	BCAR1	16	75269477	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	51723132	75269477	15085276	76	45762											
BANP	54971	mdanderson.org	37	16	88105725	88105725	+	Silent	SNP	G	G	A	rs8050209	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	88105725	G	A	88105725	2	1	719	1	0	0	0	0	0	0	0	1	1310	1103	39	1		1	BANP	16	88105725	Silent	SNP	G	TCGA-KO-8409-01A-11D-2310-10	12836248	88105725	2249028	77	45763											
PELP1	27043	broad.mit.edu	37	17	4575433	4575433	+	Silent	SNP	C	C	T	rs201455361	alternate_allele	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	4575433	C	T	4575433	2	4	719	1	0	0	0	0	0	0	0	1	11732	680	24	2		2	PELP1	17	4575433	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10		4575433	76619777	78	45764											
CCDC144A	9720	broad.mit.edu	37	17	16665752	16665753	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	16665753	-	A	16665752	7	5	719	1	0	1	1	0	0	0	0	0	2779	1074	38	0	3846	0	CCDC144A	17	16665752	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	12090319	16665752	64529458	79	45765											
KRTAP9-2	83899	mdanderson.org	37	17	39383027	39383027	+	Missense_Mutation	SNP	G	G	T	rs71371478	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	39383027	G	T	39383027	3	4	719	1	0	0	0	0	1	0	0	0	8580	1087	38	4	123	4	KRTAP9-2	17	39383027	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	22717275	39383027	41812183	80	45766											
CDC27	996	mdanderson.org	37	17	45234432	45234432	+	Missense_Mutation	SNP	G	G	T	rs201187810		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	45234432	G	T	45234432	3	4	719	1	0	0	0	0	1	0	0	0	3068	1174	41	4	1855	4	CDC27	17	45234432	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	5851405	45234432	35960778	81	45767											
TTLL6	284076	broad.mit.edu	37	17	46847199	46847202	+	Frame_Shift_Del	DEL	CATG	CATG	-	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	CATG	CATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	-	46847202	CATG	-	46847199	7	5	719	1	0	1	0	1	0	0	0	0	16743	826	29	0	382	0	TTLL6	17	46847199	Frame_Shift_Del	DEL	CATG	TCGA-KO-8409-01A-11D-2310-10	1612767	46847199	34348011	82	45768											
LPO	4025	ucsc.edu	37	17	56343529	56343529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	56343529	T	C	56343529	3	2	719	1	0	0	0	0	1	0	0	0	8929	1580	55	3	1573	3	LPO	17	56343529	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	9496330	56343529	24851681	83	45769											
TEX14	56155	bcgsc.ca	37	17	56649410	56649410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	56649410	A	G	56649410	3	3	719	1	0	0	0	0	1	0	0	0	15790	304	11	3	802	3	TEX14	17	56649410	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	305881	56649410	24545800	84	45770											
GAA	2548	broad.mit.edu	37	17	78086495	78086495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	78086495	G	T	78086495	3	4	719	1	0	0	0	0	1	0	0	0	6154	1087	38	4	1919	4	GAA	17	78086495	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	21437085	78086495	3108715	85	45771											
LAMA1	284217	broad.mit.edu	37	18	6949154	6949155	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	6949155	-	C	6949154	7	5	719	1	0	1	1	0	0	0	0	0	8612	30	2	0	745	0	LAMA1	18	6949154	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		6949154	71128094	86	45772											
ADAMTS10	81794	broad.mit.edu	37	19	8650351	8650352	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	8650352	-	T	8650351	7	5	719	1	0	1	1	0	0	0	0	0	256	884	31	0	473	0	ADAMTS10	19	8650351	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		8650351	50478632	87	45773											
HOOK2	29911	mdanderson.org	37	19	12876964	12876964	+	Missense_Mutation	SNP	G	G	C	rs897804	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	12876964	G	C	12876964	3	2	719	1	0	0	0	0	1	0	0	0	7290	1252	44	4	731	4	HOOK2	19	12876964	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	4226613	12876964	46252019	88	45774											
MAP1S	55201	broad.mit.edu	37	19	17838792	17838793	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	17838793	-	C	17838792	7	5	719	1	0	1	1	0	0	0	0	0	9241	1203	42	0	2617	0	MAP1S	19	17838792	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	4961828	17838792	41290191	89	45775											
ACTN4	81	mdanderson.org;bcgsc.ca	37	19	39217630	39217630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	39217630	A	G	39217630	3	3	719	1	0	0	0	0	1	0	0	0	207	159	6	3	2294	3	ACTN4	19	39217630	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	21378838	39217630	19911353	90	45776											
EID2B	126272	mdanderson.org	37	19	40023308	40023308	+	Silent	SNP	A	A	G	rs1123301	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	40023308	A	G	40023308	2	3	719	1	0	0	0	0	0	0	0	1	4990	291	11	3		3	EID2B	19	40023308	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	805678	40023308	19105675	91	45777											
FUZ	80199	broad.mit.edu	37	19	50312460	50312461	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	50312461	-	G	50312460	7	5	719	1	0	1	1	0	0	0	0	0	6119	304	11	0	530	0	FUZ	19	50312460	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	10289152	50312460	8816523	92	45778											
SIGLEC11	114132	ucsc.edu	37	19	50455564	50455564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	50455564	A	G	50455564	3	3	719	1	0	0	0	0	1	0	0	0	14320	275	10	3	369	3	SIGLEC11	19	50455564	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	143104	50455564	8673419	93	45779											
NLRP13	126204	broad.mit.edu	37	19	56424477	56424477	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	-	56424477	T	-	56424477	7	5	719	1	0	1	0	1	0	0	0	0	10482	1550	54	0	2451	0	NLRP13	19	56424477	Frame_Shift_Del	DEL	T	TCGA-KO-8409-01A-11D-2310-10	5968913	56424477	2704506	94	45780											
ZNF552	79818	mdanderson.org	37	19	58320162	58320162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	A	58320162	G	A	58320162	3	1	719	1	0	0	0	0	1	0	0	0	17996	1087	38	1	757	1	ZNF552	19	58320162	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	1895685	58320162	808821	95	45781											
C19orf18	147685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	58472845	58472845	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	58472845	T	G	58472845	3	3	719	1	0	0	0	0	1	0	0	0	1912	1435	50	5	209	5	C19orf18	19	58472845	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	152683	58472845	656138	96	45782											
SIGLEC1	6614	broad.mit.edu	37	20	3677991	3677992	+	Splice_Site	INS	-	-	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	3677992	-	G	3677991	8	5	719	1	0	1	1	0	0	0	1	0	14318	1594	55	0	3060	0	SIGLEC1	20	3677991	Splice_Site	INS	-	TCGA-KO-8409-01A-11D-2310-10		3677991	59347529	97	45783											
POTEH	23784	broad.mit.edu	37	22	16266972	16266973	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	16266973	-	T	16266972	7	5	719	1	0	1	1	0	0	0	0	0	12274	835	29	0	168	0	POTEH	22	16266972	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		16266972	35037594	98	45784											
RIMBP3	85376	broad.mit.edu	37	22	20458634	20458635	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	20458635	-	C	20458634	7	5	719	1	0	1	1	0	0	0	0	0	13377	1203	42	0	2255	0	RIMBP3	22	20458634	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	4191662	20458634	30845932	99	45785											
VCX3B	425054	mdanderson.org	37	X	8434221	8434221	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	C	8434221	G	C	8434221	3	2	719	1	0	0	0	0	1	0	0	0	17157	1261	44	4	458	4	VCX3B	23	8434221	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10		8434221	146836339	100	45786											
SATL1	340562	broad.mit.edu	37	X	84363631	84363632	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	T	84363632	-	T	84363631	7	5	719	1	0	1	1	0	0	0	0	0	13868	797	28	0	1574	0	SATL1	23	84363631	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	75929410	84363631	70906929	101	45787											
RGAG1	57529	broad.mit.edu	37	X	109698465	109698465	+	Silent	SNP	A	A	G	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989	G	109698465	A	G	109698465	2	3	719	1	0	0	0	0	0	0	0	1	13287	69	3	3		3	RGAG1	23	109698465	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	25334834	109698465	45572095	102	45788											
PRAMEF1	65121	mdanderson.org	37	1	12855822	12855822	+	Missense_Mutation	SNP	G	G	A	rs148127907	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	12855822	G	A	12855822	3	1	720	1	0	0	0	0	1	0	0	0	12435	1319	46	2	1112	2	PRAMEF1	1	12855822	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10		12855822	236394799	1	45789											
LOC649330	0	mdanderson.org	37	1	12907313	12907313	+	Missense_Mutation	SNP	G	G	A	rs199978302	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	12907313	G	A	12907313	3	1	720	1	0	0	0	0	1	0	0	0	8892	971	34	2	55	2	LOC649330	1	12907313	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	51491	12907313	236343308	2	45790											
LOC440563	0	mdanderson.org	37	1	13183631	13183631	+	Missense_Mutation	SNP	A	A	T	rs80009603	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	13183631	A	T	13183631	3	4	720	1	0	0	0	0	1	0	0	0	8886	43	2	5	643	5	LOC440563	1	13183631	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	276318	13183631	236066990	3	45791											
PRAMEF18	391003	mdanderson.org	37	1	13474980	13474980	+	Silent	SNP	G	G	A	rs12123444	bycluster	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	13474980	G	A	13474980	2	1	720	1	0	0	0	0	0	0	0	1	12443	963	34	2		2	PRAMEF18	1	13474980	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	291349	13474980	235775641	4	45792											
AMPD1	270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	115220103	115220103	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	115220103	G	C	115220103	4	2	720	1	0	0	0	0	0	1	0	0	585	1256	44	4	1014	4	AMPD1	1	115220103	Nonsense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	101745123	115220103	134030518	5	45793											
THADA	63892	broad.mit.edu;bcgsc.ca	37	2	43755040	43755040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	43755040	T	C	43755040	3	2	720	1	0	0	0	0	1	0	0	0	15852	1792	62	3	2577	3	THADA	2	43755040	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		43755040	199444333	6	45794											
ADD2	119	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	70910791	70910791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	70910791	C	A	70910791	3	1	720	1	0	0	0	0	1	0	0	0	305	594	21	4	1328	4	ADD2	2	70910791	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	27155751	70910791	172288582	7	45795											
CCDC74A	90557	mdanderson.org	37	2	132285919	132285919	+	Missense_Mutation	SNP	G	G	A	rs2292302	bycluster	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	132285919	G	A	132285919	3	1	720	1	0	0	0	0	1	0	0	0	2849	1131	39	1		1	CCDC74A	2	132285919	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	61375128	132285919	110913454	8	45796											
SLC4A10	57282	ucsc.edu;mdanderson.org;bcgsc.ca	37	2	162757484	162757484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	162757484	G	A	162757484	3	1	720	1	0	0	0	0	1	0	0	0	14664	1117	39	1	1536	1	SLC4A10	2	162757484	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	30471565	162757484	80441889	9	45797											
UGT1A9	54600	mdanderson.org	37	2	234580967	234580967	+	Silent	SNP	A	A	G	rs76359435	bycluster;alternate_allele	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	234580967	A	G	234580967	2	3	720	1	0	0	0	0	0	0	0	1	16964	69	3	3		3	UGT1A9	2	234580967	Silent	SNP	A	TCGA-KO-8410-01A-11D-2310-10	71823483	234580967	8618406	10	45798			1	148		3	3	68	N	C_AA_A	9.156303e-09
UGT1A9	54600	mdanderson.org	37	2	234581002	234581002	+	Missense_Mutation	SNP	C	C	G	rs76167146	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	234581002	C	G	234581002	3	3	720	1	0	0	0	0	1	0	0	0	16964	913	32	4	424	4	UGT1A9	2	234581002	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	35	234581002	8618371	11	45799			1	148		3	3	68	N	C_AA_A	9.156303e-09
UGT1A9	54600	mdanderson.org	37	2	234581034	234581035	+	Missense_Mutation	DNP	AA	AA	GC	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	GC	234581035	AA	GC	234581034	3	3	720	1	0	0	0	0	1	0	0	0	16964	362	13	3	456	3	UGT1A9	2	234581034	Missense_Mutation	DNP	AA	TCGA-KO-8410-01A-11D-2310-10	32	234581034	8618339	12	45800			1	148		3	3	68	N	C_AA_A	9.156303e-09
PASK	23178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	242076636	242076636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	242076636	G	A	242076636	3	1	720	1	0	0	0	0	1	0	0	0	11479	1261	44	2	3099	2	PASK	2	242076636	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	7495602	242076636	1122737	13	45801											
ATP6V1A	523	broad.mit.edu	37	3	113522467	113522467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	113522467	T	C	113522467	3	2	720	1	0	0	0	0	1	0	0	0	1177	1638	57	3	1578	3	ATP6V1A	3	113522467	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		113522467	84499963	14	45802											
KIAA1407	57577	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	113775289	113775289	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	113775289	A	C	113775289	3	2	720	1	0	0	0	0	1	0	0	0	8236	275	10	5	2853	5	KIAA1407	3	113775289	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	252822	113775289	84247141	15	45803											
LPHN3	23284	broad.mit.edu;mdanderson.org	37	4	62598528	62598528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	62598528	T	C	62598528	3	2	720	1	0	0	0	0	1	0	0	0	8924	1667	58	3	469	3	LPHN3	4	62598528	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		62598528	128555748	16	45804											
CXCL13	10563	broad.mit.edu	37	4	78528886	78528886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	78528886	A	G	78528886	3	3	720	1	0	0	0	0	1	0	0	0	4083	295	11	3	100	3	CXCL13	4	78528886	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	15930358	78528886	112625390	17	45805											
FRAS1	80144	broad.mit.edu;mdanderson.org	37	4	79403634	79403634	+	Silent	SNP	C	C	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	79403634	C	T	79403634	2	4	720	1	0	0	0	0	0	0	0	1	6049	639	23	1		1	FRAS1	4	79403634	Silent	SNP	C	TCGA-KO-8410-01A-11D-2310-10	874748	79403634	111750642	18	45806											
RAP1GDS1	5910	mdanderson.org	37	4	99341203	99341203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	99341203	T	C	99341203	3	2	720	1	0	0	0	0	1	0	0	0	13052	1667	58	3	1253	3	RAP1GDS1	4	99341203	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	19937569	99341203	91813073	19	45807											
GUCY1A3	2982	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	4	156638325	156638325	+	Silent	SNP	C	C	T	rs112384014		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	156638325	C	T	156638325	2	4	720	1	0	0	0	0	0	0	0	1	6901	755	27	1		1	GUCY1A3	4	156638325	Silent	SNP	C	TCGA-KO-8410-01A-11D-2310-10	57297122	156638325	34515951	20	45808											
FRG1	2483	mdanderson.org	37	4	190876272	190876272	+	Missense_Mutation	SNP	G	G	A	rs202104107		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	190876272	G	A	190876272	3	1	720	1	0	0	0	0	1	0	0	0	6053	1174	41	2	416	2	FRG1	4	190876272	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	34237947	190876272	278004	21	45809			2	149		2	2	36	G		7.122589e-05
FRG1	2483	mdanderson.org	37	4	190876307	190876307	+	Splice_Site	SNP	G	G	A	rs200854715		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	190876307	G	A	190876307	5	1	720	1	0	0	0	0	0	0	1	0	6053	1391	48	2	451	2	FRG1	4	190876307	Splice_Site	SNP	G	TCGA-KO-8410-01A-11D-2310-10	35	190876307	277969	22	45810			2	149		2	2	36	G		7.122589e-05
LMBRD2	92255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	36136550	36136550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	36136550	C	T	36136550	3	4	720	1	0	0	0	0	1	0	0	0	8850	623	22	2	1531	2	LMBRD2	5	36136550	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10		36136550	144778710	23	45811											
ITGA2	3673	broad.mit.edu;hgsc.bcm.edu	37	5	52376390	52376393	+	Frame_Shift_Del	DEL	TCCC	TCCC	-	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	TCCC	TCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	-	52376393	TCCC	-	52376390	7	5	720	1	0	1	0	1	0	0	0	0	7882	1435	50	0	3076	0	ITGA2	5	52376390	Frame_Shift_Del	DEL	TCCC	TCGA-KO-8410-01A-11D-2310-10	16239840	52376390	128538870	24	45812	660	2									
ITGA2	3673	bcgsc.ca	37	5	52376391	52376394	+	Frame_Shift_Del	DEL	TCCC	TCCC	-	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	TCCC	TCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	-	52376394	TCCC	-	52376391	7	5	720	1	0	1	0	1	0	0	0	0	7882	845	30	0	3077	0	ITGA2	5	52376391	Frame_Shift_Del	DEL	TCCC	TCGA-KO-8410-01A-11D-2310-10	1	52376391	128538869	25	45813	660	2									
ADAMTS19	171019	ucsc.edu	37	5	128990039	128990039	+	Silent	SNP	A	A	G	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	128990039	A	G	128990039	2	3	720	1	0	0	0	0	0	0	0	1	264	40	2	3		3	ADAMTS19	5	128990039	Silent	SNP	A	TCGA-KO-8410-01A-11D-2310-10	76613648	128990039	51925221	26	45814											
NUPL2	11097	ucsc.edu	37	7	23221811	23221811	+	Missense_Mutation	SNP	A	A	G	rs145987368	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	23221811	A	G	23221811	3	3	720	1	0	0	0	0	1	0	0	0	10782	188	7	3	109	3	NUPL2	7	23221811	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10		23221811	135916852	27	45815											
ADAM9	8754	bcgsc.ca	37	8	38912013	38912013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	38912013	A	G	38912013	3	3	720	1	0	0	0	0	1	0	0	0	253	275	10	3	1366	3	ADAM9	8	38912013	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10		38912013	107452009	28	45816											
ADHFE1	137872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	67357454	67357454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	67357454	T	G	67357454	3	3	720	1	0	0	0	0	1	0	0	0	314	1623	56	5	377	5	ADHFE1	8	67357454	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	28445441	67357454	79006568	29	45817											
FAM135B	51059	broad.mit.edu	37	8	139165349	139165349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	139165349	T	C	139165349	3	2	720	1	0	0	0	0	1	0	0	0	5453	1521	53	3	2883	3	FAM135B	8	139165349	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	71807895	139165349	7198673	30	45818											
ELAVL2	1993	broad.mit.edu	37	9	23762052	23762052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	23762052	T	C	23762052	3	2	720	1	0	0	0	0	1	0	0	0	5052	1551	54	3	922	3	ELAVL2	9	23762052	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		23762052	117451379	31	45819											
OR13C2	392376	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	107367862	107367862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	107367862	C	T	107367862	3	4	720	1	0	0	0	0	1	0	0	0	10941	855	30	2	912	2	OR13C2	9	107367862	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	83605810	107367862	33845569	32	45820											
SIRT1	23411	broad.mit.edu	37	10	69648852	69648852	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	-	69648852	A	-	69648852	7	5	720	1	0	1	0	1	0	0	0	0	14350	131	5	0	770	0	SIRT1	10	69648852	Frame_Shift_Del	DEL	A	TCGA-KO-8410-01A-11D-2310-10		69648852	65885895	33	45821											
LZTS2	84445	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	102762597	102762597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	102762597	C	T	102762597	3	4	720	1	0	0	0	0	1	0	0	0	9146	623	22	2	304	2	LZTS2	10	102762597	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	33113745	102762597	32772150	34	45822											
STK32C	282974	ucsc.edu	37	10	134121101	134121101	+	Silent	SNP	C	C	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	134121101	C	T	134121101	2	4	720	1	0	0	0	0	0	0	0	1	15311	738	26	2		2	STK32C	10	134121101	Silent	SNP	C	TCGA-KO-8410-01A-11D-2310-10	31358504	134121101	1413646	35	45823											
MUC6	4588	mdanderson.org	37	11	1016773	1016773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	1016773	G	T	1016773	3	4	720	1	0	0	0	0	1	0	0	0	9987	1174	41	4	1303	4	MUC6	11	1016773	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10		1016773	133989743	36	45824	661	3									
MUC6	4588	mdanderson.org	37	11	1016777	1016777	+	Silent	SNP	G	G	A	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	1016777	G	A	1016777	2	1	720	1	0	0	0	0	0	0	0	1	9987	1136	40	1		1	MUC6	11	1016777	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	4	1016777	133989739	37	45825	661	3									
MUC6	4588	mdanderson.org	37	11	1016787	1016787	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	1016787	A	T	1016787	3	4	720	1	0	0	0	0	1	0	0	0	9987	72	3	5	1317	5	MUC6	11	1016787	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	10	1016787	133989729	38	45826	661	3									
MUC6	4588	mdanderson.org	37	11	1017162	1017162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	1017162	G	A	1017162	3	1	720	1	0	0	0	0	1	0	0	0	9987	1116	39	1	1692	1	MUC6	11	1017162	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	375	1017162	133989354	39	45827											
OR4C3	256144	mdanderson.org	37	11	48346513	48346513	+	Silent	SNP	T	T	C	rs78206553	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	48346513	T	C	48346513	2	2	720	1	0	0	0	0	0	0	0	1	11057	1741	61	3		3	OR4C3	11	48346513	Silent	SNP	T	TCGA-KO-8410-01A-11D-2310-10	47329351	48346513	86660003	40	45828											
PRB2	653247	mdanderson.org	37	12	11546395	11546395	+	Missense_Mutation	SNP	G	G	T	rs11054277		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	11546395	G	T	11546395	3	4	720	1	0	0	0	0	1	0	0	0	12453	1348	47	4	637	4	PRB2	12	11546395	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10		11546395	122305500	41	45829											
ZDHHC17	23390	broad.mit.edu;mdanderson.org	37	12	77216266	77216266	+	Silent	SNP	A	A	G	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	77216266	A	G	77216266	2	3	720	1	0	0	0	0	0	0	0	1	17619	69	3	3		3	ZDHHC17	12	77216266	Silent	SNP	A	TCGA-KO-8410-01A-11D-2310-10	65669871	77216266	56635629	42	45830											
TDG	6996	mdanderson.org	37	12	104376608	104376608	+	Silent	SNP	G	G	A	rs61937629	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	104376608	G	A	104376608	2	1	720	1	0	0	0	0	0	0	0	1	15737	991	35	2		2	TDG	12	104376608	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	27160342	104376608	29475287	43	45831											
MCF2L	23263	ucsc.edu;bcgsc.ca	37	13	113750740	113750740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	113750740	T	C	113750740	3	2	720	1	0	0	0	0	1	0	0	0	9386	1580	55	3	3507	3	MCF2L	13	113750740	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		113750740	1419138	44	45832											
LTBP2	4053	ucsc.edu	37	14	74995365	74995365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	74995365	T	C	74995365	3	2	720	1	0	0	0	0	1	0	0	0	9081	1638	57	3	3376	3	LTBP2	14	74995365	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		74995365	32354175	45	45833											
AHNAK2	113146	mdanderson.org	37	14	105412347	105412347	+	Silent	SNP	C	C	T	rs55842266	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	105412347	C	T	105412347	2	4	720	1	0	0	0	0	0	0	0	1	415	564	20	2		2	AHNAK2	14	105412347	Silent	SNP	C	TCGA-KO-8410-01A-11D-2310-10	30416982	105412347	1937193	46	45834											
ATP10A	57194	bcgsc.ca	37	15	25928591	25928591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	25928591	A	G	25928591	3	3	720	1	0	0	0	0	1	0	0	0	1116	72	3	3	1185	3	ATP10A	15	25928591	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10		25928591	76602801	47	45835											
GOLGA8B	440270	ucsc.edu	37	15	34819940	34819940	+	Missense_Mutation	SNP	G	G	C	rs2615360	bycluster;byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	34819940	G	C	34819940	3	2	720	1	0	0	0	0	1	0	0	0	6571	991	35	4	110	4	GOLGA8B	15	34819940	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	8891349	34819940	67711452	48	45836											
GOLGA6D	653643	mdanderson.org	37	15	75586737	75586737	+	Missense_Mutation	SNP	T	T	C	rs2118541		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	75586737	T	C	75586737	3	2	720	1	0	0	0	0	1	0	0	0	6567	1696	59	3	2073	3	GOLGA6D	15	75586737	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	40766797	75586737	26944655	49	45837											
ADAMTS7	11173	mdanderson.org	37	15	79058378	79058378	+	Missense_Mutation	SNP	A	A	G	rs71402935	bycluster	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	79058378	A	G	79058378	3	3	720	1	0	0	0	0	1	0	0	0	271	304	11	3	1209	3	ADAMTS7	15	79058378	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	3471641	79058378	23473014	50	45838											
RHOT2	89941	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	721884	721884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	721884	G	T	721884	3	4	720	1	0	0	0	0	1	0	0	0	13357	1145	40	4	1029	4	RHOT2	16	721884	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10		721884	89632869	51	45839											
TPSB2	64499	mdanderson.org	37	16	1279704	1279704	+	Silent	SNP	A	A	G	rs62012906		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	1279704	A	G	1279704	2	3	720	1	0	0	0	0	0	0	0	1	16436	117	5	3		3	TPSB2	16	1279704	Silent	SNP	A	TCGA-KO-8410-01A-11D-2310-10	557820	1279704	89075049	52	45840	662	4									
TPSB2	64499	mdanderson.org	37	16	1279710	1279710	+	Silent	SNP	G	G	A	rs200630968	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	1279710	G	A	1279710	2	1	720	1	0	0	0	0	0	0	0	1	16436	1306	46	2		2	TPSB2	16	1279710	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	6	1279710	89075043	53	45841	662	4									
TPSB2	64499	mdanderson.org	37	16	1279714	1279714	+	Missense_Mutation	SNP	A	A	G	rs192643610	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	1279714	A	G	1279714	3	3	720	1	0	0	0	0	1	0	0	0	16436	159	6	3	758	3	TPSB2	16	1279714	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	4	1279714	89075039	54	45842	662	4									
TPSB2	64499	mdanderson.org	37	16	1279717	1279717	+	Missense_Mutation	SNP	C	C	T	rs201728868	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	1279717	C	T	1279717	3	4	720	1	0	0	0	0	1	0	0	0	16436	884	31	1	761	1	TPSB2	16	1279717	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	3	1279717	89075036	55	45843	662	4									
ZNF668	79759	ucsc.edu	37	16	31072996	31072996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	31072996	T	C	31072996	3	2	720	1	0	0	0	0	1	0	0	0	18087	1551	54	3	610	3	ZNF668	16	31072996	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	29793279	31072996	59281757	56	45844											
COPS3	8533	ucsc.edu	37	17	17184462	17184462	+	Silent	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	17184462	T	C	17184462	2	2	720	1	0	0	0	0	0	0	0	1	3736	1654	58	3		3	COPS3	17	17184462	Silent	SNP	T	TCGA-KO-8410-01A-11D-2310-10		17184462	64010748	57	45845											
MUC16	94025	mdanderson.org	37	19	8999414	8999414	+	Silent	SNP	G	G	A	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	8999414	G	A	8999414	2	1	720	1	0	0	0	0	0	0	0	1	9980	1368	48	2		2	MUC16	19	8999414	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10		8999414	50129569	58	45846											
ZNF575	284346	ucsc.edu	37	19	44039421	44039421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	44039421	C	T	44039421	3	4	720	1	0	0	0	0	1	0	0	0	18019	710	25	2	326	2	ZNF575	19	44039421	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	35040007	44039421	15089562	59	45847											
ZNF224	7767	broad.mit.edu	37	19	44611929	44611929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	44611929	C	T	44611929	3	4	720	1	0	0	0	0	1	0	0	0	17790	594	21	2	1630	2	ZNF224	19	44611929	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	572508	44611929	14517054	60	45848											
ZNF285	26974	mdanderson.org	37	19	44891010	44891010	+	Missense_Mutation	SNP	G	G	C	rs150792548	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	44891010	G	C	44891010	3	2	720	1	0	0	0	0	1	0	0	0	17834	1087	38	4	379	4	ZNF285	19	44891010	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	279081	44891010	14237973	61	45849											
VN1R4	317703	mdanderson.org	37	19	53770838	53770838	+	Silent	SNP	G	G	A	rs201450916		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	53770838	G	A	53770838	2	1	720	1	0	0	0	0	0	0	0	1	17192	1161	41	2		2	VN1R4	19	53770838	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	8879828	53770838	5358145	62	45850											
C20orf152	140894	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	20	34611599	34611599	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	34611599	T	A	34611599	3	1	720	1	0	0	0	0	1	0	0	0	2094	1722	60	5	1375	5	C20orf152	20	34611599	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		34611599	28413921	63	45851											
SERINC3	10955	broad.mit.edu;mdanderson.org	37	20	43129733	43129733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	43129733	T	C	43129733	3	2	720	1	0	0	0	0	1	0	0	0	14094	1667	58	3	165	3	SERINC3	20	43129733	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	8518134	43129733	19895787	64	45852											
DSCAM	1826	broad.mit.edu;mdanderson.org	37	21	41384994	41384994	+	Silent	SNP	G	G	A	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	41384994	G	A	41384994	2	1	720	1	0	0	0	0	0	0	0	1	4770	1368	48	2		2	DSCAM	21	41384994	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10		41384994	6744901	65	45853											
MTMR3	8897	ucsc.edu	37	22	30418651	30418651	+	Silent	SNP	T	T	C	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	C	30418651	T	C	30418651	2	2	720	1	0	0	0	0	0	0	0	1	9952	1693	59	3		3	MTMR3	22	30418651	Silent	SNP	T	TCGA-KO-8410-01A-11D-2310-10		30418651	20885915	66	45854											
BRWD3	254065	broad.mit.edu	37	X	79989615	79989615	+	Splice_Site	SNP	A	A	G	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	G	79989615	A	G	79989615	5	3	720	1	0	0	0	0	0	0	1	0	1528	405	14	3	4444	3	BRWD3	23	79989615	Splice_Site	SNP	A	TCGA-KO-8410-01A-11D-2310-10		79989615	75280945	67	45855											
CXorf48	54967	broad.mit.edu;mdanderson.org	37	X	134294442	134294442	+	Silent	SNP	G	G	A	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	A	134294442	G	A	134294442	2	1	720	1	0	0	0	0	0	0	0	1	4113	987	35	2		2	CXorf48	23	134294442	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	54304827	134294442	20976118	68	45856											
BRCC3	79184	broad.mit.edu	37	X	154344462	154344462	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d	T	154344462	A	T	154344462	3	4	720	1	0	0	0	0	1	0	0	0	1502	202	7	5	788	5	BRCC3	23	154344462	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	20050020	154344462	926098	69	45857											
TTC39A	22996	ucsc.edu	37	1	51761772	51761772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	51761772	T	C	51761772	3	2	721	1	0	0	0	0	1	0	0	0	16719	1667	58	3	633	3	TTC39A	1	51761772	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10		51761772	197488849	1	45858											
USP24	23358	ucsc.edu	37	1	55595207	55595207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	55595207	A	G	55595207	3	3	721	1	0	0	0	0	1	0	0	0	17067	217	8	3	4432	3	USP24	1	55595207	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	3833435	55595207	193655414	2	45859											
WLS	79971	hgsc.bcm.edu;mdanderson.org	37	1	68697908	68697908	+	Silent	SNP	T	T	C	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	68697908	T	C	68697908	2	2	721	1	0	0	0	0	0	0	0	1	17388	1838	64	3		3	WLS	1	68697908	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10	13102701	68697908	180552713	3	45860											
WNT2B	7482	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	113058941	113058941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	113058941	G	A	113058941	3	1	721	1	0	0	0	0	1	0	0	0	17399	1116	39	1	726	1	WNT2B	1	113058941	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	44361033	113058941	136191680	4	45861											
SLC27A3	11000	mdanderson.org	37	1	153748161	153748161	+	Missense_Mutation	SNP	G	G	C	rs34527123	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	153748161	G	C	153748161	3	2	721	1	0	0	0	0	1	0	0	0	14540	1232	43	4	331	4	SLC27A3	1	153748161	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	40689220	153748161	95502460	5	45862											
HMCN1	83872	broad.mit.edu;bcgsc.ca	37	1	185891568	185891568	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	185891568	C	T	185891568	4	4	721	1	0	0	0	0	0	1	0	0	7227	644	23	1	984	1	HMCN1	1	185891568	Nonsense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10	32143407	185891568	63359053	6	45863											
FAM179A	165186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	29274925	29274925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	29274925	C	T	29274925	3	4	721	1	0	0	0	0	1	0	0	0	5509	478	17	2	3100	2	FAM179A	2	29274925	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		29274925	213924448	7	45864											
CTDSPL	10217	ucsc.edu;mdanderson.org	37	3	38009346	38009346	+	Silent	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	38009346	G	A	38009346	2	1	721	1	0	0	0	0	0	0	0	1	4007	1103	39	1		1	CTDSPL	3	38009346	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10		38009346	160013084	8	45865											
NKTR	4820	broad.mit.edu	37	3	42660605	42660605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	42660605	G	A	42660605	3	1	721	1	0	0	0	0	1	0	0	0	10455	1232	43	2	237	2	NKTR	3	42660605	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	4651259	42660605	155361825	9	45866											
BSN	8927	broad.mit.edu	37	3	49689196	49689196	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	-	49689196	A	-	49689196	7	5	721	1	0	1	0	1	0	0	0	0	1532	188	7	0	2225	0	BSN	3	49689196	Frame_Shift_Del	DEL	A	TCGA-KO-8411-01A-11D-2310-10	7028591	49689196	148333234	10	45867											
RAD54L2	23132	broad.mit.edu	37	3	51624506	51624508	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	-	51624508	GAG	-	51624506	7	5	721	1	0	1	0	1	0	0	0	0	13007	943	33	0	72	0	RAD54L2	3	51624506	In_Frame_Del	DEL	GAG	TCGA-KO-8411-01A-11D-2310-10	1935310	51624506	146397924	11	45868											
OR5H1	26341	mdanderson.org	37	3	97851659	97851659	+	Missense_Mutation	SNP	A	A	T	rs199787047	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	97851659	A	T	97851659	3	4	721	1	0	0	0	0	1	0	0	0	11166	217	8	5	120	5	OR5H1	3	97851659	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	46227153	97851659	100170771	12	45869	663	2									
OR5H1	26341	mdanderson.org	37	3	97851661	97851661	+	Missense_Mutation	SNP	G	G	T	rs200721525	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	97851661	G	T	97851661	3	4	721	1	0	0	0	0	1	0	0	0	11166	1348	47	4	122	4	OR5H1	3	97851661	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	2	97851661	100170769	13	45870	663	2									
COL6A5	256076	hgsc.bcm.edu	37	3	130095482	130095482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	130095482	T	A	130095482	3	1	721	1	0	0	0	0	1	0	0	0	3704	1580	55	5	476	5	COL6A5	3	130095482	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10	32243821	130095482	67926948	14	45871											
FGFRL1	53834	mdanderson.org	37	4	1019078	1019078	+	Silent	SNP	T	T	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	1019078	T	A	1019078	2	1	721	1	0	0	0	0	0	0	0	1	5876	1538	54	5		5	FGFRL1	4	1019078	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10		1019078	190135198	15	45872											
DSPP	1834	broad.mit.edu	37	4	88535571	88535571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	88535571	A	G	88535571	3	3	721	1	0	0	0	0	1	0	0	0	4784	275	10	3	1771	3	DSPP	4	88535571	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	87516493	88535571	102618705	16	45873											
FAT1	2195	broad.mit.edu	37	4	187541479	187541479	+	Silent	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	187541479	G	A	187541479	2	1	721	1	0	0	0	0	0	0	0	1	5696	1140	40	1		1	FAT1	4	187541479	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10	99005908	187541479	3612797	17	45874											
FRG1	2483	mdanderson.org	37	4	190876307	190876307	+	Splice_Site	SNP	G	G	A	rs200854715		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	190876307	G	A	190876307	5	1	721	1	0	0	0	0	0	0	1	0	6053	1391	48	2	451	2	FRG1	4	190876307	Splice_Site	SNP	G	TCGA-KO-8411-01A-11D-2310-10	3334828	190876307	277969	18	45875											
OXCT1	5019	bcgsc.ca	37	5	41794806	41794806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	41794806	C	T	41794806	3	4	721	1	0	0	0	0	1	0	0	0	11336	797	28	2	441	2	OXCT1	5	41794806	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		41794806	139120454	19	45876											
SEMA6A	57556	mdanderson.org	37	5	115837967	115837967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	115837967	T	C	115837967	3	2	721	1	0	0	0	0	1	0	0	0	14052	1550	54	3	3003	3	SEMA6A	5	115837967	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10	74043161	115837967	65077293	20	45877											
SLC26A8	116369	ucsc.edu	37	6	35930387	35930387	+	Silent	SNP	A	A	G	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	35930387	A	G	35930387	2	3	721	1	0	0	0	0	0	0	0	1	14536	175	7	3		3	SLC26A8	6	35930387	Silent	SNP	A	TCGA-KO-8411-01A-11D-2310-10		35930387	135184680	21	45878											
PKD1L1	168507	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	7	47968829	47968829	+	Silent	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	47968829	C	T	47968829	2	4	721	1	0	0	0	0	0	0	0	1	11971	639	23	1		1	PKD1L1	7	47968829	Silent	SNP	C	TCGA-KO-8411-01A-11D-2310-10		47968829	111169834	22	45879											
POM121	9883	broad.mit.edu	37	7	72413476	72413477	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	72413477	-	C	72413476	7	5	721	1	0	1	1	0	0	0	0	0	12246	1203	42	0	2187	0	POM121	7	72413476	Frame_Shift_Ins	INS	-	TCGA-KO-8411-01A-11D-2310-10	24444647	72413476	86725187	23	45880											
GTF2IRD2	84163	mdanderson.org	37	7	74212075	74212075	+	Silent	SNP	G	G	T	rs71554701		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	74212075	G	T	74212075	2	4	721	1	0	0	0	0	0	0	0	1	6876	1306	46	4		4	GTF2IRD2	7	74212075	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10	1798599	74212075	84926588	24	45881											
AASS	10157	mdanderson.org	37	7	121773650	121773650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	121773650	G	C	121773650	3	2	721	1	0	0	0	0	1	0	0	0	24	1232	43	4	2741	4	AASS	7	121773650	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	47561575	121773650	37365013	25	45882											
GGH	8836	broad.mit.edu;bcgsc.ca	37	8	63942762	63942762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	63942762	T	C	63942762	3	2	721	1	0	0	0	0	1	0	0	0	6364	1551	54	3	745	3	GGH	8	63942762	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10		63942762	82421260	26	45883											
PDP1	54704	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	8	94934838	94934838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	94934838	G	A	94934838	3	1	721	1	0	0	0	0	1	0	0	0	11692	1116	39	1	734	1	PDP1	8	94934838	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	30992076	94934838	51429184	27	45884											
TRPS1	7227	broad.mit.edu	37	8	116616283	116616283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	116616283	T	C	116616283	3	2	721	1	0	0	0	0	1	0	0	0	16605	1667	58	3	1987	3	TRPS1	8	116616283	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10	21681445	116616283	29747739	28	45885											
LCN1	3933	mdanderson.org	37	9	138413982	138413982	+	Silent	SNP	G	G	A	rs150536266	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	138413982	G	A	138413982	2	1	721	1	0	0	0	0	0	0	0	1	8687	1045	37	1		1	LCN1	9	138413982	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10		138413982	2799449	29	45886											
FAM21C	253725	mdanderson.org	37	10	46248649	46248649	+	Missense_Mutation	SNP	T	T	C	rs2610452	bycluster	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	46248649	T	C	46248649	3	2	721	1	0	0	0	0	1	0	0	0	5546	1551	54	3	1194	3	FAM21C	10	46248649	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10		46248649	89286098	30	45887											
SLIT1	6585	ucsc.edu;mdanderson.org;bcgsc.ca	37	10	98819913	98819913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	98819913	C	T	98819913	3	4	721	1	0	0	0	0	1	0	0	0	14752	768	27	1	3772	1	SLIT1	10	98819913	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10	52571264	98819913	36714834	31	45888											
NEURL	9148	broad.mit.edu	37	10	105331354	105331354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	105331354	G	A	105331354	3	1	721	1	0	0	0	0	1	0	0	0	10352	1087	38	1	434	1	NEURL	10	105331354	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	6511441	105331354	30203393	32	45889											
CTBP2	1488	bcgsc.ca	37	10	126715160	126715161	+	In_Frame_Ins	INS	-	-	GCCGCAGGCTGGGGCTGCAGG	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	GCCGCAGGCTGGGGCTGCAGG	126715161	-	GCCGCAGGCTGGGGCTGCAGG	126715160	7	5	721	1	0	1	1	0	0	0	0	0	4000	971	34	0	1824	0	CTBP2	10	126715160	In_Frame_Ins	INS	-	TCGA-KO-8411-01A-11D-2310-10	21383806	126715160	8819587	33	45890											
MUC6	4588	mdanderson.org	37	11	1017679	1017679	+	Missense_Mutation	SNP	A	A	G	rs111294390	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	1017679	A	G	1017679	3	3	721	1	0	0	0	0	1	0	0	0	9987	304	11	3	2209	3	MUC6	11	1017679	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10		1017679	133988837	34	45891											
MUC6	4588	mdanderson.org	37	11	1018271	1018271	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	1018271	G	C	1018271	3	2	721	1	0	0	0	0	1	0	0	0	9987	1194	42	4	2801	4	MUC6	11	1018271	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	592	1018271	133988245	35	45892											
MUC2	4583	hgsc.bcm.edu	37	11	1092845	1092845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	1092845	C	T	1092845	3	4	721	1	0	0	0	0	1	0	0	0	9982	478	17	2	4782	2	MUC2	11	1092845	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10	74574	1092845	133913671	36	45893											
MYBPC3	4607	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	11	47356593	47356593	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	47356593	G	A	47356593	4	1	721	1	0	0	0	0	0	1	0	0	10020	1101	38	1	951	1	MYBPC3	11	47356593	Nonsense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	46263748	47356593	87649923	37	45894											
KRTAP5-10	387273	mdanderson.org	37	11	71276725	71276725	+	Missense_Mutation	SNP	A	A	G	rs201471375	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	71276725	A	G	71276725	3	3	721	1	0	0	0	0	1	0	0	0	8566	449	16	3	94	3	KRTAP5-10	11	71276725	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	23920132	71276725	63729791	38	45895											
ARHGEF17	9828	mdanderson.org	37	11	73020389	73020389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	73020389	A	T	73020389	3	4	721	1	0	0	0	0	1	0	0	0	900	217	8	5	708	5	ARHGEF17	11	73020389	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	1743664	73020389	61986127	39	45896											
ATN1	1822	mdanderson.org	37	12	7045906	7045906	+	Silent	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	7045906	G	A	7045906	2	1	721	1	0	0	0	0	0	0	0	1	1111	962	34	2		2	ATN1	12	7045906	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10		7045906	126805989	40	45897											
CLEC9A	283420	hgsc.bcm.edu;mdanderson.org	37	12	10205356	10205356	+	Silent	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	10205356	C	T	10205356	2	4	721	1	0	0	0	0	0	0	0	1	3524	912	32	2		2	CLEC9A	12	10205356	Silent	SNP	C	TCGA-KO-8411-01A-11D-2310-10	3159450	10205356	123646539	41	45898											
EPS8	2059	broad.mit.edu;hgsc.bcm.edu	37	12	15784389	15784392	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	-	15784392	TTGT	-	15784389	7	5	721	1	0	1	0	1	0	0	0	0	5196	1722	60	0	453	0	EPS8	12	15784389	Frame_Shift_Del	DEL	TTGT	TCGA-KO-8411-01A-11D-2310-10	5579033	15784389	118067506	42	45899	664	2									
EPS8	2059	bcgsc.ca	37	12	15784390	15784393	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	-	15784393	TTGT	-	15784390	7	5	721	1	0	1	0	1	0	0	0	0	5196	1812	63	0	454	0	EPS8	12	15784390	Frame_Shift_Del	DEL	TTGT	TCGA-KO-8411-01A-11D-2310-10	1	15784390	118067505	43	45900	664	2									
SLC4A8	9498	broad.mit.edu	37	12	51868965	51868966	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	51868966	-	G	51868965	7	5	721	1	0	1	1	0	0	0	0	0	14672	72	3	0	2209	0	SLC4A8	12	51868965	Frame_Shift_Ins	INS	-	TCGA-KO-8411-01A-11D-2310-10	36084575	51868965	81982930	44	45901											
MARCH9	92979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	58152575	58152575	+	Silent	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	58152575	C	T	58152575	2	4	721	1	0	0	0	0	0	0	0	1	9315	784	28	2		2	MARCH9	12	58152575	Silent	SNP	C	TCGA-KO-8411-01A-11D-2310-10	6283610	58152575	75699320	45	45902											
PPFIA2	8499	broad.mit.edu	37	12	81675147	81675147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	81675147	A	G	81675147	3	3	721	1	0	0	0	0	1	0	0	0	12317	372	13	3	696	3	PPFIA2	12	81675147	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	23522572	81675147	52176748	46	45903											
RILPL1	353116	broad.mit.edu	37	12	123957223	123957223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	123957223	G	T	123957223	3	4	721	1	0	0	0	0	1	0	0	0	13374	962	34	4	141	4	RILPL1	12	123957223	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	42282076	123957223	9894672	47	45904											
XPO4	64328	broad.mit.edu	37	13	21373326	21373326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	21373326	G	A	21373326	3	1	721	1	0	0	0	0	1	0	0	0	17458	1261	44	2	1187	2	XPO4	13	21373326	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10		21373326	93796552	48	45905											
CDH24	64403	broad.mit.edu	37	14	23522739	23522739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	23522739	C	T	23522739	3	4	721	1	0	0	0	0	1	0	0	0	3111	768	27	1	1295	1	CDH24	14	23522739	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		23522739	83826801	49	45906											
EXOC5	10640	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	14	57675499	57675499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	57675499	T	C	57675499	3	2	721	1	0	0	0	0	1	0	0	0	5309	1464	51	3	175	3	EXOC5	14	57675499	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10	34152760	57675499	49674041	50	45907											
FAM174B	400451	mdanderson.org	37	15	93198687	93198688	+	Missense_Mutation	DNP	GA	GA	CC	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	CC	93198688	GA	CC	93198687	3	2	721	1	0	0	0	0	1	0	0	0	5500	1174	41	4	288	4	FAM174B	15	93198687	Missense_Mutation	DNP	GA	TCGA-KO-8411-01A-11D-2310-10		93198687	9332705	51	45908											
CFDP1	10428	broad.mit.edu	37	16	75448501	75448501	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	-	75448501	T	-	75448501	7	5	721	1	0	1	0	1	0	0	0	0	3284	1617	56	0	766	0	CFDP1	16	75448501	Frame_Shift_Del	DEL	T	TCGA-KO-8411-01A-11D-2310-10		75448501	14906252	52	45909											
BPTF	2186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	65960371	65960371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	65960371	C	T	65960371	3	4	721	1	0	0	0	0	1	0	0	0	1497	768	27	1	8789	1	BPTF	17	65960371	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		65960371	15234839	53	45910											
ONECUT2	9480	hgsc.bcm.edu;ucsc.edu	37	18	55143925	55143925	+	Silent	SNP	G	G	A	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	55143925	G	A	55143925	2	1	721	1	0	0	0	0	0	0	0	1	10876	1132	40	1		1	ONECUT2	18	55143925	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10		55143925	22933323	54	45911											
POLRMT	5442	mdanderson.org	37	19	622336	622336	+	Missense_Mutation	SNP	T	T	G	rs2238549	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	622336	T	G	622336	3	3	721	1	0	0	0	0	1	0	0	0	12245	1551	54	5	2080	5	POLRMT	19	622336	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10		622336	58506647	55	45912											
ADAMTSL5	339366	bcgsc.ca	37	19	1506881	1506881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	1506881	A	G	1506881	3	3	721	1	0	0	0	0	1	0	0	0	278	304	11	3	528	3	ADAMTSL5	19	1506881	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	884545	1506881	57622102	56	45913											
MUC16	94025	mdanderson.org	37	19	8999421	8999421	+	Missense_Mutation	SNP	G	G	C	rs75266616		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	8999421	G	C	8999421	3	2	721	1	0	0	0	0	1	0	0	0	9980	1261	44	4	2885	4	MUC16	19	8999421	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	7492540	8999421	50129562	57	45914											
ZC3H4	23211	mdanderson.org	37	19	47575243	47575243	+	Silent	SNP	T	T	A	rs392366		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	A	47575243	T	A	47575243	2	1	721	1	0	0	0	0	0	0	0	1	17582	1567	55	5		5	ZC3H4	19	47575243	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10	38575822	47575243	11553740	58	45915											
ZNF836	162962	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	52660555	52660555	+	Silent	SNP	A	A	G	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	52660555	A	G	52660555	2	3	721	1	0	0	0	0	0	0	0	1	18199	446	16	3		3	ZNF836	19	52660555	Silent	SNP	A	TCGA-KO-8411-01A-11D-2310-10	5085312	52660555	6468428	59	45916											
VN1R4	317703	mdanderson.org	37	19	53770825	53770825	+	Missense_Mutation	SNP	A	A	G	rs141780644	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	G	53770825	A	G	53770825	3	3	721	1	0	0	0	0	1	0	0	0	17192	72	3	3	814	3	VN1R4	19	53770825	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	1110270	53770825	5358158	60	45917											
ADAMTS1	9510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	21	28216883	28216883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	28216883	C	T	28216883	3	4	721	1	0	0	0	0	1	0	0	0	255	594	21	2	2548	2	ADAMTS1	21	28216883	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		28216883	19913012	61	45918											
KRTAP10-10	353333	mdanderson.org	37	21	46057625	46057625	+	Silent	SNP	T	T	C	rs55677560	bycluster	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	46057625	T	C	46057625	2	2	721	1	0	0	0	0	0	0	0	1	8513	1567	55	3		3	KRTAP10-10	21	46057625	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10	17840742	46057625	2072270	62	45919	665	2									
KRTAP10-10	353333	mdanderson.org	37	21	46057634	46057634	+	Silent	SNP	T	T	C	rs61029972	bycluster;byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	C	46057634	T	C	46057634	2	2	721	1	0	0	0	0	0	0	0	1	8513	1702	59	3		3	KRTAP10-10	21	46057634	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10	9	46057634	2072261	63	45920	665	2									
CXorf36	79742	bcgsc.ca	37	X	45010908	45010908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b	T	45010908	C	T	45010908	3	4	721	1	0	0	0	0	1	0	0	0	4108	884	31	1	14	1	CXorf36	23	45010908	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		45010908	110259652	64	45921											
NBPF10	100132406	ucsc.edu	37	1	145302775	145302775	+	Missense_Mutation	SNP	T	T	G	rs71241610		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	145302775	T	G	145302775	3	3	722	1	0	0	0	0	1	0	0	0	10200	1638	57	5	1243	5	NBPF10	1	145302775	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10		145302775	103947846	1	45922											
FAM163A	148753	broad.mit.edu	37	1	179782953	179782953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	179782953	G	A	179782953	3	1	722	1	0	0	0	0	1	0	0	0	5480	1059	37	1	139	1	FAM163A	1	179782953	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	34480178	179782953	69467668	2	45923											
SMEK2	57223	bcgsc.ca	37	2	55842601	55842601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	55842601	A	G	55842601	3	3	722	1	0	0	0	0	1	0	0	0	14807	449	16	3	2429	3	SMEK2	2	55842601	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10		55842601	187356772	3	45924											
ATG9A	79065	bcgsc.ca	37	2	220085850	220085850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	220085850	T	C	220085850	3	2	722	1	0	0	0	0	1	0	0	0	1102	1667	58	3	211	3	ATG9A	2	220085850	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	164243249	220085850	23113523	4	45925											
PRR21	643905	mdanderson.org	37	2	240981515	240981515	+	Silent	SNP	A	A	G	rs59139800	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	240981515	A	G	240981515	2	3	722	1	0	0	0	0	0	0	0	1	12602	214	8	3		3	PRR21	2	240981515	Silent	SNP	A	TCGA-KO-8413-01A-11D-2310-10	20895665	240981515	2217858	5	45926											
COL8A1	1295	broad.mit.edu;mdanderson.org	37	3	99514923	99514923	+	Silent	SNP	G	G	A	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	99514923	G	A	99514923	2	1	722	1	0	0	0	0	0	0	0	1	3707	1364	48	2		2	COL8A1	3	99514923	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10		99514923	98507507	6	45927											
MUC4	4585	mdanderson.org	37	3	195505763	195505763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	195505763	G	A	195505763	3	1	722	1	0	0	0	0	1	0	0	0	9985	1000	35	2		2	MUC4	3	195505763	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	95990840	195505763	2516667	7	45928			1	150		4	4	6903	N	T_G_C	2.724578e-07
MUC4	4585	mdanderson.org	37	3	195505859	195505859	+	Missense_Mutation	SNP	T	T	C	rs151339448		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	195505859	T	C	195505859	3	2	722	1	0	0	0	0	1	0	0	0	9985	1696	59	3		3	MUC4	3	195505859	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	96	195505859	2516571	8	45929			1	150		4	4	6903	N	T_G_C	2.724578e-07
MUC4	4585	mdanderson.org	37	3	195509235	195509235	+	Silent	SNP	C	C	A	rs77084193		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	195509235	C	A	195509235	2	1	722	1	0	0	0	0	0	0	0	1	9985	755	27	4		4	MUC4	3	195509235	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	3376	195509235	2513195	9	45930			1	150		4	4	6903	N	T_G_C	2.724578e-07
MUC4	4585	mdanderson.org	37	3	195512665	195512665	+	Missense_Mutation	SNP	G	G	A	rs79300100	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	195512665	G	A	195512665	3	1	722	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195512665	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	3430	195512665	2509765	10	45931			1	150		4	4	6903	N	T_G_C	2.724578e-07
GPR78	27201	mdanderson.org	37	4	8583312	8583312	+	Missense_Mutation	SNP	A	A	C	rs17844778	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	8583312	A	C	8583312	3	2	722	1	0	0	0	0	1	0	0	0	6717	272	10	5	605	5	GPR78	4	8583312	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10		8583312	182570964	11	45932											
MAP9	79884	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	156294336	156294336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	156294336	T	C	156294336	3	2	722	1	0	0	0	0	1	0	0	0	9277	1850	64	3	1554	3	MAP9	4	156294336	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	147711024	156294336	34859940	12	45933											
FRG1	2483	mdanderson.org	37	4	190876287	190876287	+	Nonsense_Mutation	SNP	G	G	A	rs113079586		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	190876287	G	A	190876287	4	1	722	1	0	0	0	0	0	1	0	0	6053	1357	47	2	431	2	FRG1	4	190876287	Nonsense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	34581951	190876287	277989	13	45934			2	151		3	3	2318	G		7.84382e-06
FRG1	2483	mdanderson.org	37	4	190876307	190876307	+	Splice_Site	SNP	G	G	A	rs200854715		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	190876307	G	A	190876307	5	1	722	1	0	0	0	0	0	0	1	0	6053	1391	48	2	451	2	FRG1	4	190876307	Splice_Site	SNP	G	TCGA-KO-8413-01A-11D-2310-10	20	190876307	277969	14	45935			2	151		3	3	2318	G		7.84382e-06
FRG1	2483	mdanderson.org	37	4	190878604	190878604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	190878604	G	A	190878604	3	1	722	1	0	0	0	0	1	0	0	0	6053	971	34	2	506	2	FRG1	4	190878604	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	2297	190878604	275672	15	45936			2	151		3	3	2318	G		7.84382e-06
HCN1	348980	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	45267264	45267264	+	Silent	SNP	G	G	A	rs141455774	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	45267264	G	A	45267264	2	1	722	1	0	0	0	0	0	0	0	1	7003	1136	40	1		1	HCN1	5	45267264	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10		45267264	135647996	16	45937											
HLA-DQA2	3118	mdanderson.org	37	6	32714125	32714125	+	Missense_Mutation	SNP	A	A	G	rs200904145	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	32714125	A	G	32714125	3	3	722	1	0	0	0	0	1	0	0	0	7212	130	5	3	736	3	HLA-DQA2	6	32714125	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10		32714125	138400942	17	45938											
C6orf170	221322	ucsc.edu	37	6	121436334	121436334	+	Missense_Mutation	SNP	T	T	C	rs201909100		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	121436334	T	C	121436334	3	2	722	1	0	0	0	0	1	0	0	0	2346	1464	51	3	760	3	C6orf170	6	121436334	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	88722209	121436334	49678733	18	45939											
UTRN	7402	bcgsc.ca	37	6	145110379	145110379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	145110379	T	C	145110379	3	2	722	1	0	0	0	0	1	0	0	0	17115	1667	58	3	9126	3	UTRN	6	145110379	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	23674045	145110379	26004688	19	45940											
TBP	6908	mdanderson.org	37	6	170871040	170871040	+	Silent	SNP	A	A	G	rs55736770	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	170871040	A	G	170871040	2	3	722	1	0	0	0	0	0	0	0	1	15656	40	2	3		3	TBP	6	170871040	Silent	SNP	A	TCGA-KO-8413-01A-11D-2310-10	25760661	170871040	244027	20	45941	666	2									
TBP	6908	mdanderson.org	37	6	170871043	170871043	+	Silent	SNP	G	G	A	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	170871043	G	A	170871043	2	1	722	1	0	0	0	0	0	0	0	1	15656	962	34	2		2	TBP	6	170871043	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10	3	170871043	244024	21	45942	666	2									
MUC17	140453	mdanderson.org	37	7	100678935	100678935	+	Missense_Mutation	SNP	C	C	T	rs116960680	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	100678935	C	T	100678935	3	4	722	1	0	0	0	0	1	0	0	0	9981	797	28	2	4248	2	MUC17	7	100678935	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10		100678935	58459728	22	45943											
SERPINE1	5054	hgsc.bcm.edu;ucsc.edu	37	7	100780310	100780310	+	Silent	SNP	C	C	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	100780310	C	T	100780310	2	4	722	1	0	0	0	0	0	0	0	1	14124	639	23	1		1	SERPINE1	7	100780310	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	101375	100780310	58358353	23	45944											
IRF5	3663	mdanderson.org	37	7	128587381	128587381	+	Silent	SNP	T	T	C	rs79724471	byfrequency;by1000genomes	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	128587381	T	C	128587381	2	2	722	1	0	0	0	0	0	0	0	1	7840	1509	53	3		3	IRF5	7	128587381	Silent	SNP	T	TCGA-KO-8413-01A-11D-2310-10	27807071	128587381	30551282	24	45945											
SDR16C5	195814	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	8	57224802	57224802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	57224802	C	T	57224802	3	4	722	1	0	0	0	0	1	0	0	0	13984	661	23	1	570	1	SDR16C5	8	57224802	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10		57224802	89139220	25	45946											
VPS13B	157680	broad.mit.edu	37	8	100832274	100832274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	100832274	A	G	100832274	3	3	722	1	0	0	0	0	1	0	0	0	17202	275	10	3	9377	3	VPS13B	8	100832274	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	43607472	100832274	45531748	26	45947											
UBR5	51366	broad.mit.edu;mdanderson.org;bcgsc.ca	37	8	103324629	103324629	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	103324629	C	G	103324629	3	3	722	1	0	0	0	0	1	0	0	0	16917	913	32	4	6479	4	UBR5	8	103324629	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10	2492355	103324629	43039393	27	45948											
FRG2B	441581	mdanderson.org	37	10	135438933	135438933	+	Silent	SNP	C	C	T	rs200793608		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	135438933	C	T	135438933	2	4	722	1	0	0	0	0	0	0	0	1	6054	523	19	1		1	FRG2B	10	135438933	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10		135438933	95814	28	45949	667	2	3	152		3	2	29	N	C_A	4.79367e-05
FRG2B	441581	mdanderson.org	37	10	135438943	135438943	+	Missense_Mutation	SNP	A	A	T	rs200701804		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	135438943	A	T	135438943	3	4	722	1	0	0	0	0	1	0	0	0	6054	275	10	5	342	5	FRG2B	10	135438943	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	10	135438943	95804	29	45950	667	2	3	152		3	2	29	N	C_A	4.79367e-05
FRG2B	441581	mdanderson.org	37	10	135438961	135438961	+	Missense_Mutation	SNP	C	C	T	rs200048408	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	135438961	C	T	135438961	3	4	722	1	0	0	0	0	1	0	0	0	6054	681	24	2	360	2	FRG2B	10	135438961	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10	18	135438961	95786	30	45951			3	152		3	2	29	N	C_A	4.79367e-05
CHID1	66005	broad.mit.edu	37	11	869923	869924	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	869924	-	C	869923	7	5	722	1	0	1	1	0	0	0	0	0	3347	962	34	0	68	0	CHID1	11	869923	Frame_Shift_Ins	INS	-	TCGA-KO-8413-01A-11D-2310-10		869923	134136593	31	45952											
OR51T1	401665	broad.mit.edu;mdanderson.org	37	11	4903765	4903765	+	Silent	SNP	C	C	T	rs138268565		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	4903765	C	T	4903765	2	4	722	1	0	0	0	0	0	0	0	1	11113	535	19	1		1	OR51T1	11	4903765	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	4033842	4903765	130102751	32	45953											
FOLH1	2346	mdanderson.org	37	11	49186293	49186293	+	Silent	SNP	C	C	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	49186293	C	T	49186293	2	4	722	1	0	0	0	0	0	0	0	1	5986	755	27	1		1	FOLH1	11	49186293	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	44282528	49186293	85820223	33	45954											
OR5M9	390162	broad.mit.edu	37	11	56230414	56230414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	56230414	A	G	56230414	3	3	722	1	0	0	0	0	1	0	0	0	11184	420	15	3	470	3	OR5M9	11	56230414	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	7044121	56230414	78776102	34	45955											
MYO7A	4647	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	76924024	76924024	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	76924024	A	T	76924024	3	4	722	1	0	0	0	0	1	0	0	0	10089	333	12	5	6598	5	MYO7A	11	76924024	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	20693610	76924024	58082492	35	45956											
PRB2	653247	hgsc.bcm.edu	37	12	11546874	11546874	+	Silent	SNP	T	T	C	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	11546874	T	C	11546874	2	2	722	1	0	0	0	0	0	0	0	1	12453	1722	60	3		3	PRB2	12	11546874	Silent	SNP	T	TCGA-KO-8413-01A-11D-2310-10		11546874	122305021	36	45957											
NCOR2	9612	broad.mit.edu	37	12	124819113	124819113	+	Silent	SNP	T	T	G	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	124819113	T	G	124819113	2	3	722	1	0	0	0	0	0	0	0	1	10243	1683	59	5		5	NCOR2	12	124819113	Silent	SNP	T	TCGA-KO-8413-01A-11D-2310-10	113272239	124819113	9032782	37	45958											
MAP3K9	4293	broad.mit.edu	37	14	71206799	71206799	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	-	71206799	A	-	71206799	7	5	722	1	0	1	0	1	0	0	0	0	9264	175	7	0	1734	0	MAP3K9	14	71206799	Frame_Shift_Del	DEL	A	TCGA-KO-8413-01A-11D-2310-10		71206799	36142741	38	45959											
AHNAK2	113146	mdanderson.org	37	14	105415691	105415691	+	Missense_Mutation	SNP	T	T	C	rs199921891		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	105415691	T	C	105415691	3	2	722	1	0	0	0	0	1	0	0	0	415	1667	58	3	11294	3	AHNAK2	14	105415691	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	34208892	105415691	1933849	39	45960											
GOLGA6D	653643	mdanderson.org	37	15	75586689	75586689	+	Missense_Mutation	SNP	T	T	A	rs2259134		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	75586689	T	A	75586689	3	1	722	1	0	0	0	0	1	0	0	0	6567	1739	60	5	2025	5	GOLGA6D	15	75586689	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10		75586689	26944703	40	45961											
SMG1	23049	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	18849726	18849726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	18849726	G	T	18849726	3	4	722	1	0	0	0	0	1	0	0	0	14808	1020	36	4	3918	4	SMG1	16	18849726	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10		18849726	71505027	41	45962											
GPR139	124274	broad.mit.edu	37	16	20084858	20084858	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	-	20084858	G	-	20084858	7	5	722	1	0	1	0	1	0	0	0	0	6655	1049	37	0	988	0	GPR139	16	20084858	Frame_Shift_Del	DEL	G	TCGA-KO-8413-01A-11D-2310-10	1235132	20084858	70269895	42	45963											
DDX19A	55308	broad.mit.edu	37	16	70405336	70405336	+	Silent	SNP	G	G	A	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	70405336	G	A	70405336	2	1	722	1	0	0	0	0	0	0	0	1	4348	1161	41	2		2	DDX19A	16	70405336	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10	50320478	70405336	19949417	43	45964											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	7578212	G	A	7578212	4	1	722	1	0	0	0	0	0	1	0	0	16393	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10		7578212	73616998	44	45965											
SNF8	11267	bcgsc.ca	37	17	47010703	47010703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	47010703	T	C	47010703	3	2	722	1	0	0	0	0	1	0	0	0	14859	1667	58	3	360	3	SNF8	17	47010703	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	39432491	47010703	34184507	45	45966											
ZNF521	25925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	22807259	22807259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	22807259	C	T	22807259	3	4	722	1	0	0	0	0	1	0	0	0	17977	768	27	1	3332	1	ZNF521	18	22807259	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10		22807259	55269989	46	45967											
EPOR	2057	ucsc.edu	37	19	11488817	11488817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	G	11488817	A	G	11488817	3	3	722	1	0	0	0	0	1	0	0	0	5191	72	3	3	160	3	EPOR	19	11488817	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10		11488817	47640166	47	45968											
MYH14	79784	ucsc.edu	37	19	50755954	50755954	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	50755954	T	C	50755954	3	2	722	1	0	0	0	0	1	0	0	0	10040	1667	58	3	1947	3	MYH14	19	50755954	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	39267137	50755954	8373029	48	45969											
ZNF808	388558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	19	53057816	53057816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	53057816	G	T	53057816	3	4	722	1	0	0	0	0	1	0	0	0	18185	1319	46	4	1657	4	ZNF808	19	53057816	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	2301862	53057816	6071167	49	45970											
ZNF587	84914	mdanderson.org	37	19	58371202	58371202	+	Silent	SNP	C	C	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	58371202	C	T	58371202	2	4	722	1	0	0	0	0	0	0	0	1	18032	697	25	2		2	ZNF587	19	58371202	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	5313386	58371202	757781	50	45971	668	3									
ZNF587	84914	mdanderson.org	37	19	58371209	58371209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	58371209	C	A	58371209	3	1	722	1	0	0	0	0	1	0	0	0	18032	710	25	4	1439	4	ZNF587	19	58371209	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10	7	58371209	757774	51	45972	668	3									
ZNF587	84914	mdanderson.org	37	19	58371212	58371212	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	58371212	A	T	58371212	3	4	722	1	0	0	0	0	1	0	0	0	18032	188	7	5	1442	5	ZNF587	19	58371212	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	3	58371212	757771	52	45973	668	3									
LAMA5	3911	mdanderson.org	37	20	60887581	60887581	+	Missense_Mutation	SNP	G	G	A	rs944895	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	60887581	G	A	60887581	3	1	722	1	0	0	0	0	1	0	0	0	8616	1144	40	1	1904	1	LAMA5	20	60887581	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10		60887581	2137939	53	45974											
FRMPD4	9758	broad.mit.edu	37	X	12735002	12735002	+	Silent	SNP	C	C	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	12735002	C	T	12735002	2	4	722	1	0	0	0	0	0	0	0	1	6066	639	23	1		1	FRMPD4	23	12735002	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10		12735002	142535558	54	45975											
NUDT10	170685	mdanderson.org	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	A	51076024	G	A	51076024	2	1	722	1	0	0	0	0	0	0	0	1	10733	991	35	2		2	NUDT10	23	51076024	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10	38341022	51076024	104194536	55	45976											
BRWD3	254065	broad.mit.edu	37	X	79932729	79932729	+	Silent	SNP	T	T	C	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	C	79932729	T	C	79932729	2	2	722	1	0	0	0	0	0	0	0	1	1528	1606	56	3		3	BRWD3	23	79932729	Silent	SNP	T	TCGA-KO-8413-01A-11D-2310-10	28856705	79932729	75337831	56	45977											
SPANXE	171489	broad.mit.edu;mdanderson.org	37	X	140785755	140785755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3	T	140785755	C	T	140785755	3	4	722	1	0	0	0	0	1	0	0	0	15002	768	27	1	136	1	SPANXE	23	140785755	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10	60853026	140785755	14484805	57	45978											
CSMD2	114784	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	34037290	34037290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	34037290	T	C	34037290	3	2	723	1	0	0	0	0	1	0	0	0	3947	1551	54	3	2730	3	CSMD2	1	34037290	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10		34037290	215213331	1	45979											
PTPRF	5792	bcgsc.ca	37	1	44079334	44079334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	44079334	A	G	44079334	3	3	723	1	0	0	0	0	1	0	0	0	12814	43	2	3	4101	3	PTPRF	1	44079334	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	10042044	44079334	205171287	2	45980											
LHX8	431707	broad.mit.edu	37	1	75622672	75622672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	75622672	T	C	75622672	3	2	723	1	0	0	0	0	1	0	0	0	8783	1580	55	3	935	3	LHX8	1	75622672	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	31543338	75622672	173627949	3	45981											
DENND4B	9909	mdanderson.org	37	1	153907306	153907306	+	Silent	SNP	T	T	C	rs12567786	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	153907306	T	C	153907306	2	2	723	1	0	0	0	0	0	0	0	1	4436	1722	60	3		3	DENND4B	1	153907306	Silent	SNP	T	TCGA-KO-8414-01A-11D-2310-10	78284634	153907306	95343315	4	45982											
FCGR3B	2215	mdanderson.org	37	1	161599643	161599643	+	Missense_Mutation	SNP	T	T	C	rs428888	bycluster;byfrequency;by2hit2allele	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	161599643	T	C	161599643	3	2	723	1	0	0	0	0	1	0	0	0	5792	1812	63	3	469	3	FCGR3B	1	161599643	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	7692337	161599643	87650978	5	45983											
KIFAP3	22920	broad.mit.edu	37	1	170004687	170004687	+	Silent	SNP	G	G	A	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	170004687	G	A	170004687	2	1	723	1	0	0	0	0	0	0	0	1	8318	1219	43	2		2	KIFAP3	1	170004687	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10	8405044	170004687	79245934	6	45984											
LPIN1	23175	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	11907890	11907890	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	11907890	T	A	11907890	3	1	723	1	0	0	0	0	1	0	0	0	8925	1739	60	5	200	5	LPIN1	2	11907890	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10		11907890	231291483	7	45985											
ADRA2B	151	mdanderson.org	37	2	96780986	96780986	+	Silent	SNP	C	C	T	rs4426564	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	96780986	C	T	96780986	2	4	723	1	0	0	0	0	0	0	0	1	338	680	24	2		2	ADRA2B	2	96780986	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10	84873096	96780986	146418387	8	45986											
OBSL1	23363	mdanderson.org	37	2	220417266	220417266	+	Missense_Mutation	SNP	C	C	T	rs59332477		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	220417266	C	T	220417266	3	4	723	1	0	0	0	0	1	0	0	0	10820	884	31	1	406	1	OBSL1	2	220417266	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	123636280	220417266	22782107	9	45987											
GPR35	2859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	241570087	241570087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	241570087	C	T	241570087	3	4	723	1	0	0	0	0	1	0	0	0	6697	768	27	1	720	1	GPR35	2	241570087	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	21152821	241570087	1629286	10	45988											
HRH1	3269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	3	11301062	11301062	+	Silent	SNP	G	G	A	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	11301062	G	A	11301062	2	1	723	1	0	0	0	0	0	0	0	1	7362	1132	40	1		1	HRH1	3	11301062	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10		11301062	186721368	11	45989											
ULK4	54986	ucsc.edu	37	3	41860994	41860994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	41860994	T	C	41860994	3	2	723	1	0	0	0	0	1	0	0	0	16990	1783	62	3	2134	3	ULK4	3	41860994	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	30559932	41860994	156161436	12	45990											
CELSR3	1951	broad.mit.edu	37	3	48697290	48697290	+	Silent	SNP	G	G	T	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	48697290	G	T	48697290	2	4	723	1	0	0	0	0	0	0	0	1	3225	987	35	4		4	CELSR3	3	48697290	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10	6836296	48697290	149325140	13	45991											
ZBBX	79740	broad.mit.edu	37	3	167039952	167039952	+	Silent	SNP	T	T	C	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	167039952	T	C	167039952	2	2	723	1	0	0	0	0	0	0	0	1	17528	1606	56	3		3	ZBBX	3	167039952	Silent	SNP	T	TCGA-KO-8414-01A-11D-2310-10	118342662	167039952	30982478	14	45992											
MUC4	4585	mdanderson.org	37	3	195509339	195509339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	195509339	C	T	195509339	3	4	723	1	0	0	0	0	1	0	0	0	9985	768	27	1		1	MUC4	3	195509339	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	28469387	195509339	2513091	15	45993											
MUC4	4585	broad.mit.edu	37	3	195513481	195513481	+	Missense_Mutation	SNP	G	G	A	rs77462830	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	195513481	G	A	195513481	3	1	723	1	0	0	0	0	1	0	0	0	9985	1319	46	2		2	MUC4	3	195513481	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	4142	195513481	2508949	16	45994											
EVC2	132884	broad.mit.edu	37	4	5564754	5564754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	5564754	C	T	5564754	3	4	723	1	0	0	0	0	1	0	0	0	5288	594	21	2	182	2	EVC2	4	5564754	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10		5564754	185589522	17	45995											
FBXL5	26234	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	15640143	15640143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	15640143	T	C	15640143	3	2	723	1	0	0	0	0	1	0	0	0	5729	1850	64	3	1536	3	FBXL5	4	15640143	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	10075389	15640143	175514133	18	45996											
CDC25C	995	broad.mit.edu	37	5	137666827	137666827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	137666827	A	G	137666827	3	3	723	1	0	0	0	0	1	0	0	0	3066	304	11	3	1430	3	CDC25C	5	137666827	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10		137666827	43248433	19	45997											
TREML2	79865	mdanderson.org	37	6	41166017	41166017	+	Missense_Mutation	SNP	C	C	T	rs77093113	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	41166017	C	T	41166017	3	4	723	1	0	0	0	0	1	0	0	0	16485	884	31	1	775	1	TREML2	6	41166017	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10		41166017	129949050	20	45998	669	2									
TREML2	79865	mdanderson.org	37	6	41166021	41166021	+	Missense_Mutation	SNP	C	C	T	rs61736679	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	41166021	C	T	41166021	3	4	723	1	0	0	0	0	1	0	0	0	16485	710	25	2	779	2	TREML2	6	41166021	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	4	41166021	129949046	21	45999	669	2									
DST	667	broad.mit.edu;bcgsc.ca	37	6	56417323	56417323	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	56417323	C	A	56417323	4	1	723	1	0	0	0	0	0	1	0	0	4785	864	30	4	7289	4	DST	6	56417323	Nonsense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	15251302	56417323	114697744	22	46000											
GGCT	79017	hgsc.bcm.edu	37	7	30544237	30544238	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	-	30544238	CT	-	30544237	7	5	723	1	0	1	0	1	0	0	0	0	6362	681	24	0	493	0	GGCT	7	30544237	Frame_Shift_Del	DEL	CT	TCGA-KO-8414-01A-11D-2310-10		30544237	128594426	23	46001	670	2									
GGCT	79017	bcgsc.ca	37	7	30544238	30544239	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	-	30544239	CT	-	30544238	7	5	723	1	0	1	0	1	0	0	0	0	6362	1550	54	0	494	0	GGCT	7	30544238	Frame_Shift_Del	DEL	CT	TCGA-KO-8414-01A-11D-2310-10	1	30544238	128594425	24	46002	670	2									
BAZ1B	9031	broad.mit.edu	37	7	72863961	72863961	+	Silent	SNP	A	A	G	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	72863961	A	G	72863961	2	3	723	1	0	0	0	0	0	0	0	1	1330	273	10	3		3	BAZ1B	7	72863961	Silent	SNP	A	TCGA-KO-8414-01A-11D-2310-10	42319723	72863961	86274702	25	46003											
GNAI1	2770	bcgsc.ca	37	7	79818278	79818284	+	Frame_Shift_Del	DEL	ATCTGGT	ATCTGGT	-	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	ATCTGGT	ATCTGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	-	79818284	ATCTGGT	-	79818278	7	5	723	1	0	1	0	1	0	0	0	0	6511	1435	50	0	136	0	GNAI1	7	79818278	Frame_Shift_Del	DEL	ATCTGGT	TCGA-KO-8414-01A-11D-2310-10	6954317	79818278	79320385	26	46004											
GRM3	2913	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	86479693	86479693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	86479693	C	T	86479693	3	4	723	1	0	0	0	0	1	0	0	0	6805	536	19	1	2413	1	GRM3	7	86479693	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	6661415	86479693	72658970	27	46005											
PTPRN2	5799	broad.mit.edu;bcgsc.ca	37	7	157449123	157449123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	157449123	G	A	157449123	3	1	723	1	0	0	0	0	1	0	0	0	12821	1145	40	1	965	1	PTPRN2	7	157449123	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	70969430	157449123	1689540	28	46006											
TRAPPC9	83696	broad.mit.edu	37	8	141321473	141321473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	141321473	T	C	141321473	3	2	723	1	0	0	0	0	1	0	0	0	16477	1797	62	3	2006	3	TRAPPC9	8	141321473	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10		141321473	5042549	29	46007											
PRSS3	5646	mdanderson.org	37	9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A	rs201061108		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	33794809	G	A	33794809	3	1	723	1	0	0	0	0	1	0	0	0	12632	1044	36	2		2	PRSS3	9	33794809	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10		33794809	107418622	30	46008	671	2									
PRSS3	5646	mdanderson.org	37	9	33794812	33794812	+	Missense_Mutation	SNP	G	G	T	rs199873220		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	33794812	G	T	33794812	3	4	723	1	0	0	0	0	1	0	0	0	12632	1218	42	4		4	PRSS3	9	33794812	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	3	33794812	107418619	31	46009	671	2									
ADAMTS14	140766	broad.mit.edu	37	10	72496471	72496471	+	Silent	SNP	C	C	T	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	72496471	C	T	72496471	2	4	723	1	0	0	0	0	0	0	0	1	259	718	25	2		2	ADAMTS14	10	72496471	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10		72496471	63038276	32	46010											
KNDC1	85442	mdanderson.org	37	10	135000148	135000148	+	Silent	SNP	T	T	C	rs3810965	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	135000148	T	C	135000148	2	2	723	1	0	0	0	0	0	0	0	1	8433	1509	53	3		3	KNDC1	10	135000148	Silent	SNP	T	TCGA-KO-8414-01A-11D-2310-10	62503677	135000148	534599	33	46011			1	153		2	2	12	N	T_A	1.954321e-05
KNDC1	85442	mdanderson.org	37	10	135000159	135000159	+	Missense_Mutation	SNP	A	A	G	rs3810964	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	135000159	A	G	135000159	3	3	723	1	0	0	0	0	1	0	0	0	8433	246	9	3	1329	3	KNDC1	10	135000159	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	11	135000159	534588	34	46012			1	153		2	2	12	N	T_A	1.954321e-05
MUC6	4588	mdanderson.org	37	11	1016628	1016628	+	Missense_Mutation	SNP	G	G	A	rs202039948		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	1016628	G	A	1016628	3	1	723	1	0	0	0	0	1	0	0	0	9987	1261	44	2	1158	2	MUC6	11	1016628	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10		1016628	133989888	35	46013			2	154		2	2	35	G		6.040504e-05
MUC6	4588	mdanderson.org	37	11	1016662	1016662	+	Missense_Mutation	SNP	G	G	A	rs201489806		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	1016662	G	A	1016662	3	1	723	1	0	0	0	0	1	0	0	0	9987	1174	41	2	1192	2	MUC6	11	1016662	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	34	1016662	133989854	36	46014			2	154		2	2	35	G		6.040504e-05
MUC2	4583	broad.mit.edu	37	11	1092624	1092624	+	Silent	SNP	C	C	A	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	1092624	C	A	1092624	2	1	723	1	0	0	0	0	0	0	0	1	9982	581	21	4		4	MUC2	11	1092624	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10	75962	1092624	133913892	37	46015											
GYLTL1B	120071	broad.mit.edu	37	11	45945039	45945039	+	Missense_Mutation	SNP	A	A	G	rs200481274		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	45945039	A	G	45945039	3	3	723	1	0	0	0	0	1	0	0	0	6914	217	8	3	307	3	GYLTL1B	11	45945039	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	44852415	45945039	89061477	38	46016											
RCOR2	283248	mdanderson.org	37	11	63679369	63679369	+	Missense_Mutation	SNP	T	T	C	rs320108	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	63679369	T	C	63679369	3	2	723	1	0	0	0	0	1	0	0	0	13196	1725	60	3	35	3	RCOR2	11	63679369	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	17734330	63679369	71327147	39	46017											
RCOR2	283248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63681937	63681937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	63681937	A	G	63681937	3	3	723	1	0	0	0	0	1	0	0	0	13196	217	8	3	1042	3	RCOR2	11	63681937	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	2568	63681937	71324579	40	46018											
OR2AT4	341152	hgsc.bcm.edu	37	11	74800084	74800084	+	Silent	SNP	G	G	A	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	74800084	G	A	74800084	2	1	723	1	0	0	0	0	0	0	0	1	10994	1368	48	2		2	OR2AT4	11	74800084	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10	11118147	74800084	60206432	41	46019											
CEP57	9702	broad.mit.edu	37	11	95561021	95561021	+	Silent	SNP	A	A	G	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	95561021	A	G	95561021	2	3	723	1	0	0	0	0	0	0	0	1	3258	69	3	3		3	CEP57	11	95561021	Silent	SNP	A	TCGA-KO-8414-01A-11D-2310-10	20760937	95561021	39445495	42	46020											
PDGFD	80310	bcgsc.ca	37	11	104034625	104034625	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	-	104034625	A	-	104034625	7	5	723	1	0	1	0	1	0	0	0	0	11667	1493	52	0	1109	0	PDGFD	11	104034625	Frame_Shift_Del	DEL	A	TCGA-KO-8414-01A-11D-2310-10	8473604	104034625	30971891	43	46021											
FEZ1	9638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	125359542	125359542	+	Silent	SNP	G	G	A	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	125359542	G	A	125359542	2	1	723	1	0	0	0	0	0	0	0	1	5830	1103	39	1		1	FEZ1	11	125359542	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10	21324917	125359542	9646974	44	46022											
PRH2	5555	mdanderson.org	37	12	11083356	11083356	+	Missense_Mutation	SNP	A	A	G	rs116998526	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	11083356	A	G	11083356	3	3	723	1	0	0	0	0	1	0	0	0	12493	246	9	3	206	3	PRH2	12	11083356	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10		11083356	122768539	45	46023											
GXYLT1	283464	mdanderson.org	37	12	42512817	42512817	+	Silent	SNP	A	A	G	rs201566551		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	42512817	A	G	42512817	2	3	723	1	0	0	0	0	0	0	0	1	6910	446	16	3		3	GXYLT1	12	42512817	Silent	SNP	A	TCGA-KO-8414-01A-11D-2310-10	31429461	42512817	91339078	46	46024											
SYNE2	23224	bcgsc.ca	37	14	64445578	64445578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	64445578	A	G	64445578	3	3	723	1	0	0	0	0	1	0	0	0	15458	43	2	3	1465	3	SYNE2	14	64445578	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10		64445578	42903962	47	46025											
PAPLN	89932	ucsc.edu	37	14	73721711	73721711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	C	73721711	T	C	73721711	3	2	723	1	0	0	0	0	1	0	0	0	11435	1580	55	3	1577	3	PAPLN	14	73721711	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	9276133	73721711	33627829	48	46026											
AHNAK2	113146	mdanderson.org	37	14	105412138	105412138	+	Missense_Mutation	SNP	A	A	G	rs200384326		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	105412138	A	G	105412138	3	3	723	1	0	0	0	0	1	0	0	0	415	304	11	3	7741	3	AHNAK2	14	105412138	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	31690427	105412138	1937402	49	46027											
SETD1A	9739	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30990508	30990508	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	G	30990508	C	G	30990508	3	3	723	1	0	0	0	0	1	0	0	0	14143	594	21	4	3451	4	SETD1A	16	30990508	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10		30990508	59364245	50	46028											
TP53	7157	hgsc.bcm.edu;bcgsc.ca	37	17	7577543	7577543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	7577543	C	A	7577543	3	1	723	1	0	0	0	0	1	0	0	0	16393	826	29	4	552	4	TP53	17	7577543	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10		7577543	73617667	51	46029											
MYO15A	51168	broad.mit.edu	37	17	18025035	18025035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	18025035	C	T	18025035	3	4	723	1	0	0	0	0	1	0	0	0	10070	623	22	2	2923	2	MYO15A	17	18025035	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	10447492	18025035	63170175	52	46030											
CDC27	996	mdanderson.org	37	17	45234664	45234664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	45234664	C	T	45234664	3	4	723	1	0	0	0	0	1	0	0	0	3068	565	20	2	1986	2	CDC27	17	45234664	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	27209629	45234664	35960546	53	46031											
ATP8B3	148229	mdanderson.org	37	19	1789556	1789556	+	Silent	SNP	C	C	T	rs12978609	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	1789556	C	T	1789556	2	4	723	1	0	0	0	0	0	0	0	1	1196	680	24	2		2	ATP8B3	19	1789556	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10		1789556	57339427	54	46032											
OR10H2	26538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	15839690	15839690	+	Silent	SNP	C	C	T	rs141193809	by1000genomes	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	15839690	C	T	15839690	2	4	723	1	0	0	0	0	0	0	0	1	10913	547	19	1		1	OR10H2	19	15839690	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10	14050134	15839690	43289293	55	46033											
PEG3	5178	broad.mit.edu;mdanderson.org;bcgsc.ca	37	19	57327003	57327003	+	Missense_Mutation	SNP	C	C	T	rs140722468		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	57327003	C	T	57327003	3	4	723	1	0	0	0	0	1	0	0	0	11727	536	19	1	1963	1	PEG3	19	57327003	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	41487313	57327003	1801980	56	46034											
ZNF814	730051	mdanderson.org	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	58385790	G	T	58385790	3	4	723	1	0	0	0	0	1	0	0	0	18188	1000	35	4	1603	4	ZNF814	19	58385790	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	1058787	58385790	743193	57	46035	672	3									
ZNF814	730051	mdanderson.org	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	T	58385793	C	T	58385793	3	4	723	1	0	0	0	0	1	0	0	0	18188	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	3	58385793	743190	58	46036	672	3									
ZNF814	730051	mdanderson.org	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	TT	58385799	CC	TT	58385798	3	4	723	1	0	0	0	0	1	0	0	0	18188	842	30	2	1611	2	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-KO-8414-01A-11D-2310-10	5	58385798	743185	59	46037	672	3									
NCOA3	8202	mdanderson.org	37	20	46279827	46279827	+	Silent	SNP	G	G	A	rs6018623	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd	A	46279827	G	A	46279827	2	1	723	1	0	0	0	0	0	0	0	1	10237	962	34	2		2	NCOA3	20	46279827	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10		46279827	16745693	60	46038											
UBXN11	91544	mdanderson.org	37	1	26608828	26608828	+	Missense_Mutation	SNP	G	G	A	rs1134584		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	26608828	G	A	26608828	3	1	724	1	0	0	0	0	1	0	0	0	16925	1232	43	2	41	2	UBXN11	1	26608828	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		26608828	222641793	1	46039											
NASP	4678	mdanderson.org	37	1	46073361	46073362	+	Missense_Mutation	DNP	CA	CA	TG	rs75187774	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	TG	46073362	CA	TG	46073361	3	4	724	1	0	0	0	0	1	0	0	0	10179	827	29	2	877	2	NASP	1	46073361	Missense_Mutation	DNP	CA	TCGA-KO-8415-01A-11D-2310-10	19464533	46073361	203177260	2	46040			1	155		2	2	13	N	G_CA	3.139817e-05
NASP	4678	mdanderson.org	37	1	46073373	46073373	+	Missense_Mutation	SNP	G	G	A	rs199792714	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	46073373	G	A	46073373	3	1	724	1	0	0	0	0	1	0	0	0	10179	1233	43	2	889	2	NASP	1	46073373	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	12	46073373	203177248	3	46041			1	155		2	2	13	N	G_CA	3.139817e-05
FAM189B	10712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	155224214	155224214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	155224214	A	T	155224214	3	4	724	1	0	0	0	0	1	0	0	0	5521	188	7	5	1791	5	FAM189B	1	155224214	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	109150841	155224214	94026407	4	46042											
FAM5C	339479	hgsc.bcm.edu;ucsc.edu	37	1	190067565	190067565	+	Silent	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	190067565	G	A	190067565	2	1	724	1	0	0	0	0	0	0	0	1	5601	1256	44	2		2	FAM5C	1	190067565	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10	34843351	190067565	59183056	5	46043											
OR14C36	127066	mdanderson.org	37	1	248512749	248512749	+	Missense_Mutation	SNP	G	G	A	rs28377739	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	248512749	G	A	248512749	3	1	724	1	0	0	0	0	1	0	0	0	10953	1116	39	1	675	1	OR14C36	1	248512749	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	58445184	248512749	737872	6	46044											
XDH	7498	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	31621476	31621476	+	Silent	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	31621476	G	A	31621476	2	1	724	1	0	0	0	0	0	0	0	1	17438	1103	39	1		1	XDH	2	31621476	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10		31621476	211577897	7	46045											
TEKT4	150483	mdanderson.org	37	2	95539855	95539855	+	Splice_Site	SNP	T	T	G	rs201662522	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	95539855	T	G	95539855	5	3	724	1	0	0	0	0	0	0	1	0	15767	1710	59	5	725	5	TEKT4	2	95539855	Splice_Site	SNP	T	TCGA-KO-8415-01A-11D-2310-10	63918379	95539855	147659518	8	46046											
GTDC1	79712	broad.mit.edu	37	2	144765015	144765015	+	Silent	SNP	A	A	G	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	144765015	A	G	144765015	2	3	724	1	0	0	0	0	0	0	0	1	6858	59	3	3		3	GTDC1	2	144765015	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10	49225160	144765015	98434358	9	46047											
TNS1	7145	broad.mit.edu	37	2	218713275	218713275	+	Silent	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	218713275	C	T	218713275	2	4	724	1	0	0	0	0	0	0	0	1	16355	680	24	2		2	TNS1	2	218713275	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	73948260	218713275	24486098	10	46048											
USP37	57695	broad.mit.edu	37	2	219350461	219350461	+	Silent	SNP	T	T	C	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	C	219350461	T	C	219350461	2	2	724	1	0	0	0	0	0	0	0	1	17080	1606	56	3		3	USP37	2	219350461	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10	637186	219350461	23848912	11	46049											
OR5H1	26341	broad.mit.edu	37	3	97851659	97851659	+	Missense_Mutation	SNP	A	A	T	rs199787047	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	97851659	A	T	97851659	3	4	724	1	0	0	0	0	1	0	0	0	11166	217	8	5	120	5	OR5H1	3	97851659	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10		97851659	100170771	12	46050											
ARGFX	503582	bcgsc.ca	37	3	121304933	121304933	+	Missense_Mutation	SNP	G	G	A	rs9813391	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	121304933	G	A	121304933	3	1	724	1	0	0	0	0	1	0	0	0	859	1058	37	1	448	1	ARGFX	3	121304933	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	23453274	121304933	76717497	13	46051											
MUC4	4585	mdanderson.org	37	3	195506482	195506482	+	Missense_Mutation	SNP	G	G	T	rs113936020		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	195506482	G	T	195506482	3	4	724	1	0	0	0	0	1	0	0	0	9985	1029	36	4		4	MUC4	3	195506482	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	74201549	195506482	2515948	14	46052			2	156		4	4	3585	N	T_G_C	1.363722e-07
MUC4	4585	mdanderson.org	37	3	195509287	195509287	+	Missense_Mutation	SNP	T	T	G	rs201610800		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	195509287	T	G	195509287	3	3	724	1	0	0	0	0	1	0	0	0	9985	1725	60	5		5	MUC4	3	195509287	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	2805	195509287	2513143	15	46053			2	156		4	4	3585	N	T_G_C	1.363722e-07
MUC4	4585	mdanderson.org	37	3	195509414	195509414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	195509414	C	T	195509414	3	4	724	1	0	0	0	0	1	0	0	0	9985	884	31	1		1	MUC4	3	195509414	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	127	195509414	2513016	16	46054			2	156		4	4	3585	N	T_G_C	1.363722e-07
MUC4	4585	broad.mit.edu	37	3	195510066	195510066	+	Silent	SNP	T	T	G	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	195510066	T	G	195510066	2	3	724	1	0	0	0	0	0	0	0	1	9985	1567	55	5		5	MUC4	3	195510066	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10	652	195510066	2512364	17	46055			2	156		4	4	3585	N	T_G_C	1.363722e-07
F2R	2149	broad.mit.edu	37	5	76029194	76029194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	76029194	G	A	76029194	3	1	724	1	0	0	0	0	1	0	0	0	5345	1145	40	1	1150	1	F2R	5	76029194	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		76029194	104886066	18	46056											
GPR98	84059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	89981756	89981756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	89981756	G	A	89981756	3	1	724	1	0	0	0	0	1	0	0	0	6728	1174	41	2	6548	2	GPR98	5	89981756	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	13952562	89981756	90933504	19	46057											
PCDHGA4	56111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	140736273	140736273	+	Silent	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	140736273	C	T	140736273	2	4	724	1	0	0	0	0	0	0	0	1	11563	668	24	2		2	PCDHGA4	5	140736273	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	50754517	140736273	40178987	20	46058											
RANBP17	64901	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	170725856	170725856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	170725856	G	A	170725856	3	1	724	1	0	0	0	0	1	0	0	0	13040	1290	45	2	3371	2	RANBP17	5	170725856	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	29989583	170725856	10189404	21	46059											
MDC1	9656	ucsc.edu	37	6	30681950	30681950	+	Silent	SNP	T	T	C	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	C	30681950	T	C	30681950	2	2	724	1	0	0	0	0	0	0	0	1	9410	1625	57	3		3	MDC1	6	30681950	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10		30681950	140433117	22	46060											
SLC26A8	116369	bcgsc.ca	37	6	35918965	35918965	+	Missense_Mutation	SNP	C	C	T	rs116200048	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	35918965	C	T	35918965	3	4	724	1	0	0	0	0	1	0	0	0	14536	652	23	1	473	1	SLC26A8	6	35918965	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	5237015	35918965	135196102	23	46061											
TREML1	340205	broad.mit.edu	37	6	41121543	41121543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	41121543	C	T	41121543	3	4	724	1	0	0	0	0	1	0	0	0	16484	681	24	2	624	2	TREML1	6	41121543	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	5202578	41121543	129993524	24	46062											
RSPH10B2	728194	mdanderson.org	37	7	5983092	5983092	+	Missense_Mutation	SNP	G	G	A	rs201187545		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	5983092	G	A	5983092	3	1	724	1	0	0	0	0	1	0	0	0	13717	1116	39	1	1019	1	RSPH10B2	7	5983092	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		5983092	153155571	25	46063											
SP8	221833	mdanderson.org	37	7	20824614	20824614	+	Silent	SNP	C	C	T	rs34908430	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	20824614	C	T	20824614	2	4	724	1	0	0	0	0	0	0	0	1	14983	639	23	1		1	SP8	7	20824614	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	14841522	20824614	138314049	26	46064											
FKBP9	11328	mdanderson.org	37	7	33044951	33044951	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	33044951	C	G	33044951	3	3	724	1	0	0	0	0	1	0	0	0	5922	535	19	4	1739	4	FKBP9	7	33044951	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	12220337	33044951	126093712	27	46065											
CHCHD2	51142	broad.mit.edu	37	7	56172050	56172050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	56172050	C	T	56172050	3	4	724	1	0	0	0	0	1	0	0	0	3318	739	26	2	298	2	CHCHD2	7	56172050	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	23127099	56172050	102966613	28	46066											
DYNC1I1	1780	ucsc.edu;mdanderson.org;bcgsc.ca	37	7	95668630	95668630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	95668630	C	A	95668630	3	1	724	1	0	0	0	0	1	0	0	0	4844	594	21	4	1507	4	DYNC1I1	7	95668630	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	39496580	95668630	63470033	29	46067											
CSMD1	64478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	3263582	3263582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	3263582	C	T	3263582	3	4	724	1	0	0	0	0	1	0	0	0	3946	536	19	1	8685	1	CSMD1	8	3263582	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10		3263582	143100440	30	46068											
GPR124	25960	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	37688272	37688272	+	Missense_Mutation	SNP	C	C	T	rs144591273		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	37688272	C	T	37688272	3	4	724	1	0	0	0	0	1	0	0	0	6645	536	19	1	768	1	GPR124	8	37688272	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	34424690	37688272	108675750	31	46069											
TG	7038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	8	134145788	134145788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	134145788	G	A	134145788	3	1	724	1	0	0	0	0	1	0	0	0	15825	1145	40	1	8258	1	TG	8	134145788	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	96457516	134145788	12218234	32	46070											
PTK2	5747	hgsc.bcm.edu;bcgsc.ca	37	8	141856698	141856698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	141856698	C	T	141856698	3	4	724	1	0	0	0	0	1	0	0	0	12773	666	23	1	2736	1	PTK2	8	141856698	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	7710910	141856698	4507324	33	46071											
PLEC	5339	mdanderson.org	37	8	144996263	144996263	+	Silent	SNP	G	G	A	rs11988293	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	144996263	G	A	144996263	2	1	724	1	0	0	0	0	0	0	0	1	12059	962	34	2		2	PLEC	8	144996263	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10	3139565	144996263	1367759	34	46072											
GLIS3	169792	mdanderson.org	37	9	4118111	4118111	+	Missense_Mutation	SNP	G	G	T	rs6415788	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	4118111	G	T	4118111	3	4	724	1	0	0	0	0	1	0	0	0	6454	1348	47	4	1457	4	GLIS3	9	4118111	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		4118111	137095320	35	46073											
LAMC3	10319	mdanderson.org	37	9	133884820	133884820	+	Missense_Mutation	SNP	T	T	G	rs3739512	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	133884820	T	G	133884820	3	3	724	1	0	0	0	0	1	0	0	0	8623	1490	52	5	221	5	LAMC3	9	133884820	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	129766709	133884820	7328611	36	46074											
PTEN	5728	hgsc.bcm.edu	37	10	89720712	89720712	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	-	89720712	A	-	89720712	7	5	724	1	0	1	0	1	0	0	0	0	12748	246	9	0	893	0	PTEN	10	89720712	Frame_Shift_Del	DEL	A	TCGA-KO-8415-01A-11D-2310-10		89720712	45814035	37	46075	673	2									
PTEN	5728	bcgsc.ca	37	10	89720713	89720713	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	-	89720713	A	-	89720713	7	5	724	1	0	1	0	1	0	0	0	0	12748	11	1	0	894	0	PTEN	10	89720713	Frame_Shift_Del	DEL	A	TCGA-KO-8415-01A-11D-2310-10	1	89720713	45814034	38	46076	673	2									
MUC6	4588	mdanderson.org	37	11	1017068	1017068	+	Silent	SNP	C	C	T	rs78992004		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	1017068	C	T	1017068	2	4	724	1	0	0	0	0	0	0	0	1	9987	639	23	1		1	MUC6	11	1017068	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10		1017068	133989448	39	46077			3	157		3	3	878	N	T_C_A	2.625848e-06
MUC6	4588	mdanderson.org	37	11	1017744	1017744	+	Missense_Mutation	SNP	T	T	C	rs200243990		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	C	1017744	T	C	1017744	3	2	724	1	0	0	0	0	1	0	0	0	9987	1725	60	3	2274	3	MUC6	11	1017744	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	676	1017744	133988772	40	46078			3	157		3	3	878	N	T_C_A	2.625848e-06
MUC6	4588	mdanderson.org	37	11	1017945	1017945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	1017945	A	G	1017945	3	3	724	1	0	0	0	0	1	0	0	0	9987	246	9	3	2475	3	MUC6	11	1017945	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	201	1017945	133988571	41	46079			3	157		3	3	878	N	T_C_A	2.625848e-06
MUC2	4583	mdanderson.org	37	11	1093311	1093311	+	Silent	SNP	C	C	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	1093311	C	A	1093311	2	1	724	1	0	0	0	0	0	0	0	1	9982	610	22	4		4	MUC2	11	1093311	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	75366	1093311	133913205	42	46080											
ZNF215	7762	bcgsc.ca	37	11	6977554	6977554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	6977554	A	G	6977554	3	3	724	1	0	0	0	0	1	0	0	0	17783	275	10	3	1364	3	ZNF215	11	6977554	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	5884243	6977554	128028962	43	46081											
OR4X1	390113	hgsc.bcm.edu	37	11	48285986	48285986	+	Missense_Mutation	SNP	T	T	A	rs76457745	alternate_allele	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	48285986	T	A	48285986	3	1	724	1	0	0	0	0	1	0	0	0	11091	1609	56	5	576	5	OR4X1	11	48285986	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	41308432	48285986	86720530	44	46082											
CDC42BPG	55561	mdanderson.org	37	11	64601933	64601933	+	Silent	SNP	T	T	C	rs7933683	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	C	64601933	T	C	64601933	2	2	724	1	0	0	0	0	0	0	0	1	3076	1683	59	3		3	CDC42BPG	11	64601933	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10	16315947	64601933	70404583	45	46083											
SLC2A3	6515	mdanderson.org	37	12	8074168	8074168	+	Silent	SNP	A	A	G	rs78504893		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	8074168	A	G	8074168	2	3	724	1	0	0	0	0	0	0	0	1	14558	59	3	3		3	SLC2A3	12	8074168	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10		8074168	125777727	46	46084											
TAS2R19	259294	mdanderson.org	37	12	11174327	11174327	+	Missense_Mutation	SNP	C	C	T	rs72475481	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	11174327	C	T	11174327	3	4	724	1	0	0	0	0	1	0	0	0	15582	632	22	2	58	2	TAS2R19	12	11174327	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	3100159	11174327	122677568	47	46085											
TAS2R31	259290	mdanderson.org	37	12	11183797	11183797	+	Silent	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	11183797	C	T	11183797	2	4	724	1	0	0	0	0	0	0	0	1	15586	912	32	2		2	TAS2R31	12	11183797	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	9470	11183797	122668098	48	46086											
GRIN2B	2904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	13828724	13828724	+	Silent	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	13828724	C	T	13828724	2	4	724	1	0	0	0	0	0	0	0	1	6787	871	31	1		1	GRIN2B	12	13828724	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	2644927	13828724	120023171	49	46087											
IPO8	10526	bcgsc.ca	37	12	30787155	30787155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	C	30787155	T	C	30787155	3	2	724	1	0	0	0	0	1	0	0	0	7805	1617	56	3	364	3	IPO8	12	30787155	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	16958431	30787155	103064740	50	46088											
KRT5	3852	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	52913573	52913573	+	Missense_Mutation	SNP	C	C	T	rs59115483	bycluster	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	52913573	C	T	52913573	3	4	724	1	0	0	0	0	1	0	0	0	8486	893	31	1	1300	1	KRT5	12	52913573	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	22126418	52913573	80938322	51	46089											
KRT76	51350	broad.mit.edu	37	12	53169330	53169330	+	Silent	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	53169330	C	T	53169330	2	4	724	1	0	0	0	0	0	0	0	1	8496	796	28	2		2	KRT76	12	53169330	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	255757	53169330	80682565	52	46090											
DGKA	1606	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	12	56335069	56335069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	56335069	G	A	56335069	3	1	724	1	0	0	0	0	1	0	0	0	4467	1145	40	1	1185	1	DGKA	12	56335069	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	3165739	56335069	77516826	53	46091											
OAS3	4940	mdanderson.org	37	12	113376452	113376452	+	Silent	SNP	C	C	T	rs1859329	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	113376452	C	T	113376452	2	4	724	1	0	0	0	0	0	0	0	1	10808	610	22	2		2	OAS3	12	113376452	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	57041383	113376452	20475443	54	46092											
ING1	3621	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	111367954	111367954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	111367954	A	T	111367954	3	4	724	1	0	0	0	0	1	0	0	0	7742	43	2	5	314	5	ING1	13	111367954	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10		111367954	3801924	55	46093											
OR4M1	441670	mdanderson.org	37	14	20248760	20248760	+	Silent	SNP	C	C	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	20248760	C	A	20248760	2	1	724	1	0	0	0	0	0	0	0	1	11082	668	24	4		4	OR4M1	14	20248760	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10		20248760	87100780	56	46094											
EVL	51466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	100595075	100595075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	100595075	G	T	100595075	3	4	724	1	0	0	0	0	1	0	0	0	5293	942	33	4	729	4	EVL	14	100595075	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	80346315	100595075	6754465	57	46095											
KIF26A	26153	mdanderson.org	37	14	104643721	104643721	+	Silent	SNP	C	C	A	rs2487301	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	104643721	C	A	104643721	2	1	724	1	0	0	0	0	0	0	0	1	8301	639	23	4		4	KIF26A	14	104643721	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	4048646	104643721	2705819	58	46096											
C15orf43	145645	mdanderson.org	37	15	45253735	45253735	+	Missense_Mutation	SNP	A	A	T	rs77033860	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	45253735	A	T	45253735	3	4	724	1	0	0	0	0	1	0	0	0	1799	101	4	5	315	5	C15orf43	15	45253735	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10		45253735	57277657	59	46097											
CPPED1	55313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	12798816	12798816	+	Missense_Mutation	SNP	T	T	A	rs3748982	alternate_allele	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	12798816	T	A	12798816	3	1	724	1	0	0	0	0	1	0	0	0	3824	1725	60	5	572	5	CPPED1	16	12798816	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10		12798816	77555937	60	46098											
CCDC135	84229	broad.mit.edu;mdanderson.org	37	16	57760055	57760055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	57760055	G	A	57760055	3	1	724	1	0	0	0	0	1	0	0	0	2771	1087	38	1	1880	1	CCDC135	16	57760055	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	44961239	57760055	32594698	61	46099											
LCAT	3931	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	16	67974324	67974324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	67974324	A	T	67974324	3	4	724	1	0	0	0	0	1	0	0	0	8665	449	16	5	520	5	LCAT	16	67974324	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	10214269	67974324	22380429	62	46100											
NCOR1	9611	mdanderson.org	37	17	16068464	16068464	+	Silent	SNP	G	G	A	rs71256849		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	16068464	G	A	16068464	2	1	724	1	0	0	0	0	0	0	0	1	10242	1049	37	1		1	NCOR1	17	16068464	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10		16068464	65126746	63	46101											
CCDC144NL	339184	mdanderson.org	37	17	20768803	20768803	+	Silent	SNP	C	C	T	rs76135364	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	20768803	C	T	20768803	2	4	724	1	0	0	0	0	0	0	0	1	2781	796	28	2		2	CCDC144NL	17	20768803	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	4700339	20768803	60426407	64	46102											
CCDC144NL	339184	mdanderson.org	37	17	20769964	20769964	+	Silent	SNP	C	C	A	rs79395366	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	20769964	C	A	20769964	2	1	724	1	0	0	0	0	0	0	0	1	2781	581	21	4		4	CCDC144NL	17	20769964	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	1161	20769964	60425246	65	46103											
KRT34	3885	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	39535652	39535652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	39535652	G	A	39535652	3	1	724	1	0	0	0	0	1	0	0	0	8478	1145	40	1	367	1	KRT34	17	39535652	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	18765688	39535652	41659558	66	46104											
DSC3	1825	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	28604440	28604440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	28604440	G	T	28604440	3	4	724	1	0	0	0	0	1	0	0	0	4769	1029	36	4	2115	4	DSC3	18	28604440	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		28604440	49472808	67	46105											
SIN3B	23309	hgsc.bcm.edu;ucsc.edu	37	19	16982119	16982119	+	Silent	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	16982119	G	A	16982119	2	1	724	1	0	0	0	0	0	0	0	1	14339	1074	38	1		1	SIN3B	19	16982119	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10		16982119	42146864	68	46106											
MAST3	23031	broad.mit.edu;mdanderson.org	37	19	18245714	18245714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	18245714	G	A	18245714	3	1	724	1	0	0	0	0	1	0	0	0	9333	1145	40	1	1767	1	MAST3	19	18245714	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	1263595	18245714	40883269	69	46107											
HAPLN4	404037	mdanderson.org	37	19	19369435	19369435	+	Silent	SNP	A	A	G	rs2074295	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	19369435	A	G	19369435	2	3	724	1	0	0	0	0	0	0	0	1	6964	156	6	3		3	HAPLN4	19	19369435	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10	1123721	19369435	39759548	70	46108											
ARHGAP33	115703	broad.mit.edu	37	19	36278799	36278799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	36278799	C	T	36278799	3	4	724	1	0	0	0	0	1	0	0	0	882	623	22	2	3414	2	ARHGAP33	19	36278799	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	16909364	36278799	22850184	71	46109											
FBL	2091	broad.mit.edu	37	19	40331124	40331124	+	Silent	SNP	A	A	G	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	40331124	A	G	40331124	2	3	724	1	0	0	0	0	0	0	0	1	5703	262	10	3		3	FBL	19	40331124	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10	4052325	40331124	18797859	72	46110											
ZNF615	284370	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	52505118	52505118	+	Silent	SNP	T	T	G	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	52505118	T	G	52505118	2	3	724	1	0	0	0	0	0	0	0	1	18052	1538	54	5		5	ZNF615	19	52505118	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10	12173994	52505118	6623865	73	46111											
VN1R2	317701	broad.mit.edu	37	19	53762250	53762250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	C	53762250	T	C	53762250	3	2	724	1	0	0	0	0	1	0	0	0	17191	1406	49	3	624	3	VN1R2	19	53762250	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	1257132	53762250	5366733	74	46112											
ZNF628	89887	mdanderson.org	37	19	55994240	55994240	+	Silent	SNP	C	C	T	rs12981044	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	55994240	C	T	55994240	2	4	724	1	0	0	0	0	0	0	0	1	18064	477	17	2		2	ZNF628	19	55994240	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	2231990	55994240	3134743	75	46113											
JAG1	182	broad.mit.edu	37	20	10629266	10629266	+	Silent	SNP	A	A	G	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	10629266	A	G	10629266	2	3	724	1	0	0	0	0	0	0	0	1	7941	262	10	3		3	JAG1	20	10629266	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10		10629266	52396254	76	46114											
CST2	1470	mdanderson.org	37	20	23805930	23805930	+	Missense_Mutation	SNP	T	T	C	rs199856966		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	C	23805930	T	C	23805930	3	2	724	1	0	0	0	0	1	0	0	0	3974	1464	51	3	174	3	CST2	20	23805930	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	13176664	23805930	39219590	77	46115											
BAGE2	85319	mdanderson.org	37	21	11058230	11058230	+	Silent	SNP	C	C	A	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	11058230	C	A	11058230	2	1	724	1	0	0	0	0	0	0	0	1	1292	871	31	4		4	BAGE2	21	11058230	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10		11058230	37071665	78	46116											
KRTAP10-4	386672	mdanderson.org	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	T	45993851	C	T	45993851	2	4	724	1	0	0	0	0	0	0	0	1	8518	776	27	1		1	KRTAP10-4	21	45993851	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	34935621	45993851	2136044	79	46117											
SCARF2	91179	mdanderson.org	37	22	20780296	20780296	+	Missense_Mutation	SNP	G	G	A	rs9680797	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	A	20780296	G	A	20780296	3	1	724	1	0	0	0	0	1	0	0	0	13897	1348	47	2	634	2	SCARF2	22	20780296	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		20780296	30524270	80	46118											
ARSD	414	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	2827911	2827911	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	2827911	C	G	2827911	3	3	724	1	0	0	0	0	1	0	0	0	989	594	21	4	548	4	ARSD	23	2827911	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10		2827911	152442649	81	46119											
PRKX	5613	mdanderson.org	37	X	3631167	3631167	+	Missense_Mutation	SNP	A	A	G	rs3752362	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e	G	3631167	A	G	3631167	3	3	724	1	0	0	0	0	1	0	0	0	12537	159	6	3	980	3	PRKX	23	3631167	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	803256	3631167	151639393	82	46120											
CLCNKB	1188	broad.mit.edu;mdanderson.org	37	1	16383402	16383402	+	Silent	SNP	C	C	T	rs6698427		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	16383402	C	T	16383402	2	4	725	1	0	0	0	0	0	0	0	1	3472	610	22	2		2	CLCNKB	1	16383402	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10		16383402	232867219	1	46121											
ZMYM4	9202	ucsc.edu	37	1	35865108	35865108	+	Silent	SNP	A	A	G	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	G	35865108	A	G	35865108	2	3	725	1	0	0	0	0	0	0	0	1	17714	262	10	3		3	ZMYM4	1	35865108	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10	19481706	35865108	213385513	2	46122											
NRD1	4898	mdanderson.org	37	1	52306075	52306075	+	Silent	SNP	T	T	C	rs78724482	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	52306075	T	C	52306075	2	2	725	1	0	0	0	0	0	0	0	1	10652	1606	56	3		3	NRD1	1	52306075	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	16440967	52306075	196944546	3	46123											
PDE4DIP	9659	bcgsc.ca	37	1	144906195	144906195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	144906195	T	C	144906195	3	2	725	1	0	0	0	0	1	0	0	0	11650	1681	58	3	4716	3	PDE4DIP	1	144906195	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	92600120	144906195	104344426	4	46124											
NBPF14	25832	broad.mit.edu	37	1	148010987	148010987	+	Silent	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	148010987	T	C	148010987	2	2	725	1	0	0	0	0	0	0	0	1	10201	1799	63	3		3	NBPF14	1	148010987	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	3104792	148010987	101239634	5	46125											
FMN2	56776	bcgsc.ca	37	1	240497469	240497469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	240497469	T	C	240497469	3	2	725	1	0	0	0	0	1	0	0	0	5957	1551	54	3	4755	3	FMN2	1	240497469	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	92486482	240497469	8753152	6	46126											
KIF26B	55083	mdanderson.org	37	1	245851609	245851609	+	Missense_Mutation	SNP	C	C	G	rs150834033	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	G	245851609	C	G	245851609	3	3	725	1	0	0	0	0	1	0	0	0	8302	623	22	4	5370	4	KIF26B	1	245851609	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	5354140	245851609	3399012	7	46127											
FBXO41	150726	mdanderson.org	37	2	73492614	73492614	+	Missense_Mutation	SNP	A	A	T	rs526106	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	73492614	A	T	73492614	3	4	725	1	0	0	0	0	1	0	0	0	5757	275	10	5	1303	5	FBXO41	2	73492614	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10		73492614	169706759	8	46128											
ARHGEF3	50650	bcgsc.ca	37	3	56789174	56789175	+	Frame_Shift_Ins	INS	-	-	GGAGC	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	GGAGC	56789175	-	GGAGC	56789174	7	5	725	1	0	1	1	0	0	0	0	0	904	1335	47	0	1402	0	ARHGEF3	3	56789174	Frame_Shift_Ins	INS	-	TCGA-KO-8416-01A-11D-2310-10		56789174	141233256	9	46129											
CD80	941	broad.mit.edu;mdanderson.org;bcgsc.ca	37	3	119263627	119263627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	119263627	C	T	119263627	3	4	725	1	0	0	0	0	1	0	0	0	3040	768	27	1	694	1	CD80	3	119263627	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	62474453	119263627	78758803	10	46130											
ALG1L2	644974	mdanderson.org	37	3	129810128	129810128	+	Silent	SNP	G	G	A	rs6804080	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	129810128	G	A	129810128	2	1	725	1	0	0	0	0	0	0	0	1	518	1103	39	1		1	ALG1L2	3	129810128	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10	10546501	129810128	68212302	11	46131											
YTHDC1	91746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	4	69195975	69195975	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	69195975	T	A	69195975	3	1	725	1	0	0	0	0	1	0	0	0	17508	1432	50	5	1047	5	YTHDC1	4	69195975	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10		69195975	121958301	12	46132											
GK2	2712	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	80328442	80328442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	80328442	C	A	80328442	3	1	725	1	0	0	0	0	1	0	0	0	6428	797	28	4	752	4	GK2	4	80328442	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	11132467	80328442	110825834	13	46133											
MRPS30	10884	mdanderson.org	37	5	44809454	44809454	+	Silent	SNP	A	A	G	rs142383960	bycluster;by1000genomes	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	G	44809454	A	G	44809454	2	3	725	1	0	0	0	0	0	0	0	1	9847	40	2	3		3	MRPS30	5	44809454	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10		44809454	136105806	14	46134											
MCTP1	79772	broad.mit.edu;mdanderson.org;bcgsc.ca	37	5	94253666	94253666	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	94253666	G	C	94253666	3	2	725	1	0	0	0	0	1	0	0	0	9407	1203	42	4	1778	4	MCTP1	5	94253666	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	49444212	94253666	86661594	15	46135											
HIST1H2BK	85236	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	27114569	27114569	+	Silent	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	27114569	T	C	27114569	2	2	725	1	0	0	0	0	0	0	0	1	7157	1722	60	3		3	HIST1H2BK	6	27114569	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10		27114569	144000498	16	46136											
SYNE1	23345	bcgsc.ca	37	6	152590301	152590301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	152590301	G	T	152590301	3	4	725	1	0	0	0	0	1	0	0	0	15457	1357	47	4	7964	4	SYNE1	6	152590301	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	125475732	152590301	18524766	17	46137											
BAZ1B	9031	mdanderson.org	37	7	72861634	72861634	+	Silent	SNP	C	C	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	72861634	C	T	72861634	2	4	725	1	0	0	0	0	0	0	0	1	1330	680	24	2		2	BAZ1B	7	72861634	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10		72861634	86277029	18	46138											
RP1L1	94137	hgsc.bcm.edu	37	8	10465962	10465962	+	Missense_Mutation	SNP	C	C	A	rs111646478		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	10465962	C	A	10465962	3	1	725	1	0	0	0	0	1	0	0	0	13546	680	24	4	1560	4	RP1L1	8	10465962	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10		10465962	135898060	19	46139											
MTMR7	9108	ucsc.edu	37	8	17206529	17206529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	G	17206529	A	G	17206529	3	3	725	1	0	0	0	0	1	0	0	0	9955	159	6	3	1492	3	MTMR7	8	17206529	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	6740567	17206529	129157493	20	46140											
ARFGEF1	10565	hgsc.bcm.edu	37	8	68112661	68112661	+	Silent	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	68112661	T	C	68112661	2	2	725	1	0	0	0	0	0	0	0	1	852	1741	61	3		3	ARFGEF1	8	68112661	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	50906132	68112661	78251361	21	46141											
MTDH	92140	ucsc.edu;bcgsc.ca	37	8	98736833	98736833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	98736833	T	C	98736833	3	2	725	1	0	0	0	0	1	0	0	0	9924	1667	58	3	1730	3	MTDH	8	98736833	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	30624172	98736833	47627189	22	46142											
SMARCA2	6595	mdanderson.org	37	9	2039815	2039815	+	Silent	SNP	G	G	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	2039815	G	A	2039815	2	1	725	1	0	0	0	0	0	0	0	1	14782	962	34	2		2	SMARCA2	9	2039815	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10		2039815	139173616	23	46143											
EPB41L4B	54566	mdanderson.org	37	9	112082510	112082510	+	Missense_Mutation	SNP	C	C	T	rs117569740	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	112082510	C	T	112082510	3	4	725	1	0	0	0	0	1	0	0	0	5158	536	19	1	2741	1	EPB41L4B	9	112082510	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	110042695	112082510	29130921	24	46144											
UCN3	114131	broad.mit.edu	37	10	5415962	5415962	+	Silent	SNP	C	C	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	5415962	C	T	5415962	2	4	725	1	0	0	0	0	0	0	0	1	16941	610	22	2		2	UCN3	10	5415962	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10		5415962	130118785	25	46145											
SLK	9748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	10	105727558	105727558	+	Missense_Mutation	SNP	A	A	C	rs137997569	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	105727558	A	C	105727558	3	2	725	1	0	0	0	0	1	0	0	0	14761	247	9	5	57	5	SLK	10	105727558	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	100311596	105727558	29807189	26	46146											
KNDC1	85442	ucsc.edu	37	10	135020674	135020674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	135020674	T	C	135020674	3	2	725	1	0	0	0	0	1	0	0	0	8433	1580	55	3	3691	3	KNDC1	10	135020674	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	29293116	135020674	514073	27	46147											
MUC6	4588	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	1017180	1017180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	1017180	G	A	1017180	3	1	725	1	0	0	0	0	1	0	0	0	9987	1377	48	2	1710	2	MUC6	11	1017180	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		1017180	133989336	28	46148											
MUC5B	727897	broad.mit.edu	37	11	1270045	1270045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	1270045	A	C	1270045	3	2	725	1	0	0	0	0	1	0	0	0	9986	159	6	5	12066	5	MUC5B	11	1270045	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	252865	1270045	133736471	29	46149											
KRTAP5-4	387267	mdanderson.org	37	11	1643255	1643255	+	Silent	SNP	G	G	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	1643255	G	A	1643255	2	1	725	1	0	0	0	0	0	0	0	1	8570	958	34	2		2	KRTAP5-4	11	1643255	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10	373210	1643255	133363261	30	46150											
ZDHHC13	54503	bcgsc.ca	37	11	19174169	19174169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	G	19174169	A	G	19174169	3	3	725	1	0	0	0	0	1	0	0	0	17615	43	2	3	841	3	ZDHHC13	11	19174169	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	17530914	19174169	115832347	31	46151											
OR1S2	219958	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	57970779	57970779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	57970779	G	A	57970779	3	1	725	1	0	0	0	0	1	0	0	0	10980	1029	36	2	105	2	OR1S2	11	57970779	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	38796610	57970779	77035737	32	46152											
MAML2	84441	mdanderson.org	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	95825407	C	T	95825407	2	4	725	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825407	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10	37854628	95825407	39181109	33	46153											
TMPRSS13	84000	mdanderson.org	37	11	117789302	117789302	+	Silent	SNP	C	C	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	117789302	C	T	117789302	2	4	725	1	0	0	0	0	0	0	0	1	16257	639	23	1		1	TMPRSS13	11	117789302	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10	21963895	117789302	17217214	34	46154											
ROBO3	64221	mdanderson.org	37	11	124750455	124750455	+	Missense_Mutation	SNP	G	G	A	rs200255001		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	124750455	G	A	124750455	3	1	725	1	0	0	0	0	1	0	0	0	13528	1116	39	1	4206	1	ROBO3	11	124750455	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	6961153	124750455	10256061	35	46155											
ARHGAP32	9743	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	11	128840231	128840231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	128840231	T	C	128840231	3	2	725	1	0	0	0	0	1	0	0	0	881	1638	57	3	1432	3	ARHGAP32	11	128840231	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	4089776	128840231	6166285	36	46156											
CLECL1	160365	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	9885606	9885606	+	Silent	SNP	G	G	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	9885606	G	A	9885606	2	1	725	1	0	0	0	0	0	0	0	1	3525	1140	40	1		1	CLECL1	12	9885606	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10		9885606	123966289	37	46157											
FMNL3	91010	broad.mit.edu	37	12	50045190	50045190	+	Silent	SNP	A	A	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	50045190	A	T	50045190	2	4	725	1	0	0	0	0	0	0	0	1	5960	175	7	5		5	FMNL3	12	50045190	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10	40159584	50045190	83806705	38	46158											
PXN	5829	broad.mit.edu	37	12	120662127	120662127	+	Missense_Mutation	SNP	C	C	A	rs202176482	alternate_allele	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	120662127	C	A	120662127	3	1	725	1	0	0	0	0	1	0	0	0	12865	478	17	4	1752	4	PXN	12	120662127	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	70616937	120662127	13189768	39	46159											
CAMKK2	10645	ucsc.edu	37	12	121678593	121678593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	121678593	C	T	121678593	3	4	725	1	0	0	0	0	1	0	0	0	2609	565	20	2	94	2	CAMKK2	12	121678593	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	1016466	121678593	12173302	40	46160											
HOMEZ	57594	mdanderson.org	37	14	23744823	23744823	+	Missense_Mutation	SNP	A	A	T	rs3208861	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	23744823	A	T	23744823	3	4	725	1	0	0	0	0	1	0	0	0	7288	214	8	5	42	5	HOMEZ	14	23744823	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10		23744823	83604717	41	46161	674	2									
HOMEZ	57594	mdanderson.org	37	14	23744826	23744826	+	Silent	SNP	T	T	C	rs76331664	alternate_allele	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	23744826	T	C	23744826	2	2	725	1	0	0	0	0	0	0	0	1	7288	1606	56	3		3	HOMEZ	14	23744826	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	3	23744826	83604714	42	46162	674	2									
MAGEL2	54551	hgsc.bcm.edu	37	15	23890897	23890897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	23890897	G	T	23890897	3	4	725	1	0	0	0	0	1	0	0	0	9196	1232	43	4	1760	4	MAGEL2	15	23890897	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		23890897	78640495	43	46163											
HERC2	8924	broad.mit.edu;mdanderson.org	37	15	28456246	28456246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	28456246	T	A	28456246	3	1	725	1	0	0	0	0	1	0	0	0	7065	1638	57	5	7733	5	HERC2	15	28456246	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	4565349	28456246	74075146	44	46164											
ZFYVE19	84936	mdanderson.org	37	15	41099910	41099910	+	Silent	SNP	A	A	G	rs62018606		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	G	41099910	A	G	41099910	2	3	725	1	0	0	0	0	0	0	0	1	17677	175	7	3		3	ZFYVE19	15	41099910	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10	12643664	41099910	61431482	45	46165											
C15orf59	388135	hgsc.bcm.edu;mdanderson.org	37	15	74032954	74032954	+	Silent	SNP	C	C	T	rs144044826		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	74032954	C	T	74032954	2	4	725	1	0	0	0	0	0	0	0	1	1809	639	23	1		1	C15orf59	15	74032954	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10	32933044	74032954	28498438	46	46166											
ADAMTS7	11173	mdanderson.org	37	15	79057989	79057989	+	Missense_Mutation	SNP	C	C	T	rs200769684		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	79057989	C	T	79057989	3	4	725	1	0	0	0	0	1	0	0	0	271	893	31	1	820	1	ADAMTS7	15	79057989	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	5025035	79057989	23473403	47	46167											
ANPEP	290	bcgsc.ca	37	15	90349234	90349234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	90349234	T	C	90349234	3	2	725	1	0	0	0	0	1	0	0	0	710	1638	57	3	2402	3	ANPEP	15	90349234	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	11291245	90349234	12182158	48	46168											
ZNF319	57567	broad.mit.edu;hgsc.bcm.edu	37	16	58030679	58030679	+	Silent	SNP	G	G	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	58030679	G	A	58030679	2	1	725	1	0	0	0	0	0	0	0	1	17849	1140	40	1		1	ZNF319	16	58030679	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10		58030679	32324074	49	46169											
FHOD1	29109	bcgsc.ca	37	16	67273272	67273272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	67273272	T	C	67273272	3	2	725	1	0	0	0	0	1	0	0	0	5889	1551	54	3	3291	3	FHOD1	16	67273272	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	9242593	67273272	23081481	50	46170											
FA2H	79152	mdanderson.org	37	16	74808425	74808425	+	Silent	SNP	G	G	A	rs929881	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	74808425	G	A	74808425	2	1	725	1	0	0	0	0	0	0	0	1	5356	962	34	2		2	FA2H	16	74808425	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10	7535153	74808425	15546328	51	46171											
ACSF3	197322	mdanderson.org	37	16	89167138	89167138	+	Missense_Mutation	SNP	G	G	C	rs11547019	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	89167138	G	C	89167138	3	2	725	1	0	0	0	0	1	0	0	0	176	1203	42	4	51	4	ACSF3	16	89167138	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	14358713	89167138	1187615	52	46172											
USP6	9098	ucsc.edu;mdanderson.org	37	17	5037195	5037195	+	Missense_Mutation	SNP	G	G	A	rs74900103		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	5037195	G	A	5037195	3	1	725	1	0	0	0	0	1	0	0	0	17098	1000	35	2	420	2	USP6	17	5037195	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		5037195	76158015	53	46173											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	17	7578208	7578208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	7578208	T	A	7578208	3	1	725	1	0	0	0	0	1	0	0	0	16393	1464	51	5	653	5	TP53	17	7578208	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	2541013	7578208	73617002	54	46174	675	2									
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	7578212	G	A	7578212	4	1	725	1	0	0	0	0	0	1	0	0	16393	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	4	7578212	73616998	55	46175	675	2									
MYO15A	51168	ucsc.edu	37	17	18057479	18057479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	18057479	T	C	18057479	3	2	725	1	0	0	0	0	1	0	0	0	10070	1696	59	3	8289	3	MYO15A	17	18057479	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	10479267	18057479	63137731	56	46176											
ENOSF1	55556	mdanderson.org	37	18	712568	712568	+	Missense_Mutation	SNP	G	G	A	rs3786349	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	712568	G	A	712568	3	1	725	1	0	0	0	0	1	0	0	0	5127	1174	41	2	1519	2	ENOSF1	18	712568	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		712568	77364680	57	46177											
CTDP1	9150	broad.mit.edu	37	18	77477838	77477838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	77477838	C	T	77477838	3	4	725	1	0	0	0	0	1	0	0	0	4004	643	23	1	2277	1	CTDP1	18	77477838	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	76765270	77477838	599410	58	46178											
SBNO2	22904	ucsc.edu;bcgsc.ca	37	19	1116843	1116843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	G	1116843	A	G	1116843	3	3	725	1	0	0	0	0	1	0	0	0	13876	246	9	3	2381	3	SBNO2	19	1116843	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10		1116843	58012140	59	46179											
S1PR2	9294	mdanderson.org	37	19	10334663	10334663	+	Silent	SNP	T	T	G	rs2116942	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	G	10334663	T	G	10334663	2	3	725	1	0	0	0	0	0	0	0	1	13807	1550	54	5		5	S1PR2	19	10334663	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	9217820	10334663	48794320	60	46180											
OR10H2	26538	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	15839010	15839010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	15839010	C	T	15839010	3	4	725	1	0	0	0	0	1	0	0	0	10913	768	27	1	159	1	OR10H2	19	15839010	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	5504347	15839010	43289973	61	46181											
ZNF528	84436	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	52919685	52919685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	52919685	G	T	52919685	3	4	725	1	0	0	0	0	1	0	0	0	17981	1203	42	4	1594	4	ZNF528	19	52919685	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	37080675	52919685	6209298	62	46182											
TGM3	7053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	20	2306576	2306576	+	Silent	SNP	T	T	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	2306576	T	C	2306576	2	2	725	1	0	0	0	0	0	0	0	1	15843	1509	53	3		3	TGM3	20	2306576	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10		2306576	60718944	63	46183											
GDF5	8200	broad.mit.edu	37	20	34021909	34021909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	G	34021909	A	G	34021909	3	3	725	1	0	0	0	0	1	0	0	0	6323	246	9	3	205	3	GDF5	20	34021909	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	31715333	34021909	29003611	64	46184											
USP25	29761	broad.mit.edu	37	21	17150316	17150316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	17150316	G	A	17150316	3	1	725	1	0	0	0	0	1	0	0	0	17068	1174	41	2	376	2	USP25	21	17150316	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		17150316	30979579	65	46185											
TRIOBP	11078	mdanderson.org	37	22	38122448	38122448	+	Silent	SNP	C	C	T	rs739137	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	38122448	C	T	38122448	2	4	725	1	0	0	0	0	0	0	0	1	16565	767	27	1		1	TRIOBP	22	38122448	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10		38122448	13182118	66	46186											
CD99	4267	broad.mit.edu	37	X	2658825	2658825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	2658825	C	T	2658825	3	4	725	1	0	0	0	0	1	0	0	0	3052	768	27	1	576	1	CD99	23	2658825	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10		2658825	152611735	67	46187											
SHROOM2	357	broad.mit.edu	37	X	9900608	9900608	+	Silent	SNP	A	A	C	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	9900608	A	C	9900608	2	2	725	1	0	0	0	0	0	0	0	1	14307	117	5	5		5	SHROOM2	23	9900608	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10	7241783	9900608	145369952	68	46188											
DCAF8L2	347442	mdanderson.org	37	X	27765417	27765417	+	Silent	SNP	G	G	A	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	27765417	G	A	27765417	2	1	725	1	0	0	0	0	0	0	0	1	4280	991	35	2		2	DCAF8L2	23	27765417	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10	17864809	27765417	127505143	69	46189											
TAF7L	54457	mdanderson.org	37	X	100531437	100531437	+	Silent	SNP	C	C	T	rs148266047	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	T	100531437	C	T	100531437	2	4	725	1	0	0	0	0	0	0	0	1	15545	680	24	2		2	TAF7L	23	100531437	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10	72766020	100531437	54739123	70	46190	676	3									
TAF7L	54457	mdanderson.org	37	X	100531443	100531443	+	Missense_Mutation	SNP	T	T	A	rs201479972		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	A	100531443	T	A	100531443	3	1	725	1	0	0	0	0	1	0	0	0	15545	1606	56	5	381	5	TAF7L	23	100531443	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	6	100531443	54739117	71	46191	676	3									
TAF7L	54457	mdanderson.org	37	X	100531446	100531446	+	Missense_Mutation	SNP	A	A	C	rs200145772		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	C	100531446	A	C	100531446	3	2	725	1	0	0	0	0	1	0	0	0	15545	214	8	5	384	5	TAF7L	23	100531446	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	3	100531446	54739114	72	46192	676	3									
SLC6A14	11254	hgsc.bcm.edu	37	X	115572265	115572265	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	-	115572265	G	-	115572265	7	5	725	1	0	1	0	1	0	0	0	0	14690	1014	35	0	356	0	SLC6A14	23	115572265	Frame_Shift_Del	DEL	G	TCGA-KO-8416-01A-11D-2310-10	15040819	115572265	39698295	73	46193	677	2									
SLC6A14	11254	bcgsc.ca	37	X	115572266	115572266	+	Splice_Site	DEL	G	G	-	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276	-	115572266	G	-	115572266	8	5	725	1	0	1	0	1	0	0	1	0	14690	1275	44	0	357	0	SLC6A14	23	115572266	Splice_Site	DEL	G	TCGA-KO-8416-01A-11D-2310-10	1	115572266	39698294	74	46194	677	2									
NOC2L	26155	ucsc.edu	37	1	880468	880468	+	Silent	SNP	C	C	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	880468	C	T	880468	2	4	726	1	0	0	0	0	0	0	0	1	10520	680	24	2		2	NOC2L	1	880468	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10		880468	248370153	1	46195	678	2									
NOC2L	26155	ucsc.edu	37	1	880475	880475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	880475	T	C	880475	3	2	726	1	0	0	0	0	1	0	0	0	10520	1667	58	3	152	3	NOC2L	1	880475	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	7	880475	248370146	2	46196	678	2									
AJAP1	55966	broad.mit.edu;mdanderson.org;bcgsc.ca	37	1	4772576	4772576	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	4772576	G	C	4772576	3	2	726	1	0	0	0	0	1	0	0	0	438	1377	48	4	652	4	AJAP1	1	4772576	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	3892101	4772576	244478045	3	46197											
TRIM63	84676	mdanderson.org;bcgsc.ca	37	1	26385003	26385003	+	Missense_Mutation	SNP	T	T	C	rs2275950	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	26385003	T	C	26385003	3	2	726	1	0	0	0	0	1	0	0	0	16550	1792	62	3	372	3	TRIM63	1	26385003	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	21612427	26385003	222865618	4	46198											
HCRTR1	3061	ucsc.edu;bcgsc.ca	37	1	32084861	32084861	+	Missense_Mutation	SNP	T	T	C	rs11806980	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	32084861	T	C	32084861	3	2	726	1	0	0	0	0	1	0	0	0	7008	1696	59	3	70	3	HCRTR1	1	32084861	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	5699858	32084861	217165760	5	46199											
GJB5	2709	broad.mit.edu	37	1	35223027	35223027	+	Silent	SNP	C	C	T	rs61750010	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	35223027	C	T	35223027	2	4	726	1	0	0	0	0	0	0	0	1	6418	755	27	1		1	GJB5	1	35223027	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	3138166	35223027	214027594	6	46200											
FHL3	2275	broad.mit.edu	37	1	38463083	38463083	+	Silent	SNP	C	C	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	38463083	C	A	38463083	2	1	726	1	0	0	0	0	0	0	0	1	5887	726	26	4		4	FHL3	1	38463083	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	3240056	38463083	210787538	7	46201											
ANP32E	81611	ucsc.edu;mdanderson.org	37	1	150199042	150199042	+	Missense_Mutation	SNP	C	C	A	rs28594165		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	150199042	C	A	150199042	3	1	726	1	0	0	0	0	1	0	0	0	709	680	24	4	239	4	ANP32E	1	150199042	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	111735959	150199042	99051579	8	46202	679	2									
ANP32E	81611	ucsc.edu;mdanderson.org	37	1	150199045	150199045	+	Silent	SNP	T	T	C	rs28460085	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	150199045	T	C	150199045	2	2	726	1	0	0	0	0	0	0	0	1	709	1606	56	3		3	ANP32E	1	150199045	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10	3	150199045	99051576	9	46203	679	2									
S100A7A	338324	bcgsc.ca	37	1	153391729	153391729	+	Missense_Mutation	SNP	G	G	A	rs56232841		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	153391729	G	A	153391729	3	1	726	1	0	0	0	0	1	0	0	0	13797	1087	38	1	256	1	S100A7A	1	153391729	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	3192684	153391729	95858892	10	46204											
RHBG	57127	bcgsc.ca	37	1	156351699	156351699	+	Missense_Mutation	SNP	G	G	A	rs3748569	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	156351699	G	A	156351699	3	1	726	1	0	0	0	0	1	0	0	0	13337	1348	47	2	965	2	RHBG	1	156351699	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	2959970	156351699	92898922	11	46205											
ANKRD45	339416	ucsc.edu	37	1	173596257	173596257	+	Missense_Mutation	SNP	A	A	T	rs12059066	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	173596257	A	T	173596257	3	4	726	1	0	0	0	0	1	0	0	0	673	11	1	5	274	5	ANKRD45	1	173596257	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	17244558	173596257	75654364	12	46206											
CACYBP	27101	hgsc.bcm.edu	37	1	174975972	174975972	+	Silent	SNP	A	A	G	rs1802325	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	174975972	A	G	174975972	2	3	726	1	0	0	0	0	0	0	0	1	2566	175	7	3		3	CACYBP	1	174975972	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10	1379715	174975972	74274649	13	46207											
PROX1	5629	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	214171103	214171103	+	Silent	SNP	C	C	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	214171103	C	T	214171103	2	4	726	1	0	0	0	0	0	0	0	1	12570	680	24	2		2	PROX1	1	214171103	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	39195131	214171103	35079518	14	46208											
ATL2	64225	bcgsc.ca	37	2	38525660	38525660	+	Missense_Mutation	SNP	C	C	G	rs7582826	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	38525660	C	G	38525660	3	3	726	1	0	0	0	0	1	0	0	0	1107	855	30	4	613	4	ATL2	2	38525660	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10		38525660	204673713	15	46209											
CLEC4F	165530	bcgsc.ca	37	2	71043461	71043461	+	Missense_Mutation	SNP	C	C	T	rs722896	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	71043461	C	T	71043461	3	4	726	1	0	0	0	0	1	0	0	0	3518	536	19	1	733	1	CLEC4F	2	71043461	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	32517801	71043461	172155912	16	46210											
LBX2	85474	ucsc.edu;bcgsc.ca	37	2	74725178	74725178	+	Missense_Mutation	SNP	G	G	A	rs17009998	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	74725178	G	A	74725178	3	1	726	1	0	0	0	0	1	0	0	0	8661	1174	41	2	127	2	LBX2	2	74725178	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	3681717	74725178	168474195	17	46211											
GPD2	2820	bcgsc.ca	37	2	157406249	157406249	+	Missense_Mutation	SNP	G	G	A	rs2116665	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	157406249	G	A	157406249	3	1	726	1	0	0	0	0	1	0	0	0	6613	1145	40	1	813	1	GPD2	2	157406249	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	82681071	157406249	85793124	18	46212											
PPIG	9360	bcgsc.ca	37	2	170493677	170493677	+	Missense_Mutation	SNP	C	C	G	rs78054206	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	170493677	C	G	170493677	3	3	726	1	0	0	0	0	1	0	0	0	12334	827	29	4	1955	4	PPIG	2	170493677	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	13087428	170493677	72705696	19	46213											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179613962	179613962	+	Missense_Mutation	SNP	C	C	T	rs72648903	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	179613962	C	T	179613962	3	4	726	1	0	0	0	0	1	0	0	0	16747	478	17	2	97132	2	TTN	2	179613962	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	9120285	179613962	63585411	20	46214											
C2orf88	84281	bcgsc.ca	37	2	191064753	191064753	+	Missense_Mutation	SNP	C	C	T	rs6753459	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	191064753	C	T	191064753	3	4	726	1	0	0	0	0	1	0	0	0	2204	565	20	2	169	2	C2orf88	2	191064753	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	11450791	191064753	52134620	21	46215											
COL4A4	1286	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	227924228	227924228	+	Missense_Mutation	SNP	G	G	A	rs36121515	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	227924228	G	A	227924228	3	1	726	1	0	0	0	0	1	0	0	0	3695	1116	39	1	2880	1	COL4A4	2	227924228	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	36859475	227924228	15275145	22	46216											
UGT1A9	54600	broad.mit.edu;hgsc.bcm.edu	37	2	234581245	234581245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	234581245	G	A	234581245	3	1	726	1	0	0	0	0	1	0	0	0	16964	1145	40	1	667	1	UGT1A9	2	234581245	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	6657017	234581245	8618128	23	46217											
STK25	10494	broad.mit.edu;bcgsc.ca	37	2	242437048	242437048	+	Missense_Mutation	SNP	G	G	A	rs140408761		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	242437048	G	A	242437048	3	1	726	1	0	0	0	0	1	0	0	0	15306	1115	39	1	205	1	STK25	2	242437048	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	7855803	242437048	762325	24	46218											
IMPDH2	3615	hgsc.bcm.edu	37	3	49065314	49065314	+	Silent	SNP	G	G	A	rs139765703		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	49065314	G	A	49065314	2	1	726	1	0	0	0	0	0	0	0	1	7734	1161	41	2		2	IMPDH2	3	49065314	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10		49065314	148957116	25	46219											
LPP	4026	bcgsc.ca	37	3	188327555	188327555	+	Missense_Mutation	SNP	T	T	C	rs7645635	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	188327555	T	C	188327555	3	2	726	1	0	0	0	0	1	0	0	0	8930	1638	57	3	1050	3	LPP	3	188327555	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	139262241	188327555	9694875	26	46220											
MUC4	4585	mdanderson.org	37	3	195511836	195511836	+	Missense_Mutation	SNP	C	C	G	rs75072939	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	195511836	C	G	195511836	3	3	726	1	0	0	0	0	1	0	0	0	9985	680	24	4		4	MUC4	3	195511836	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	7184281	195511836	2510594	27	46221											
POLN	353497	mdanderson.org	37	4	2175733	2175733	+	Silent	SNP	A	A	G	rs2022302	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	2175733	A	G	2175733	2	3	726	1	0	0	0	0	0	0	0	1	12214	214	8	3		3	POLN	4	2175733	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10		2175733	188978543	28	46222											
SLIT2	9353	mdanderson.org	37	4	20535317	20535317	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	20535317	G	C	20535317	3	2	726	1	0	0	0	0	1	0	0	0	14753	1174	41	4	1881	4	SLIT2	4	20535317	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	18359584	20535317	170618959	29	46223											
BBS12	166379	broad.mit.edu;mdanderson.org	37	4	123663688	123663688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	123663688	G	A	123663688	3	1	726	1	0	0	0	0	1	0	0	0	1337	1058	37	1	643	1	BBS12	4	123663688	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	103128371	123663688	67490588	30	46224											
HCN1	348980	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	45396746	45396746	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	45396746	C	G	45396746	3	3	726	1	0	0	0	0	1	0	0	0	7003	594	21	4	1614	4	HCN1	5	45396746	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10		45396746	135518514	31	46225											
CATSPER3	347732	bcgsc.ca	37	5	134343766	134343766	+	Missense_Mutation	SNP	T	T	G	rs3896260	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	134343766	T	G	134343766	3	3	726	1	0	0	0	0	1	0	0	0	2691	1461	51	5	626	5	CATSPER3	5	134343766	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	88947020	134343766	46571494	32	46226											
PCDHA6	56142	mdanderson.org	37	5	140207965	140207965	+	Missense_Mutation	SNP	G	G	C	rs61730626	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	140207965	G	C	140207965	3	2	726	1	0	0	0	0	1	0	0	0	11535	1116	39	4	291	4	PCDHA6	5	140207965	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	5864199	140207965	40707295	33	46227											
PCDH12	51294	hgsc.bcm.edu	37	5	141324954	141324954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	141324954	A	T	141324954	3	4	726	1	0	0	0	0	1	0	0	0	11517	159	6	5	11	5	PCDH12	5	141324954	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	1116989	141324954	39590306	34	46228											
SOX30	11063	broad.mit.edu	37	5	157078493	157078493	+	Silent	SNP	G	G	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	157078493	G	A	157078493	2	1	726	1	0	0	0	0	0	0	0	1	14965	1074	38	1		1	SOX30	5	157078493	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	15753539	157078493	23836767	35	46229											
CDHR2	54825	mdanderson.org	37	5	175992370	175992370	+	Missense_Mutation	SNP	T	T	C	rs114786529	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	175992370	T	C	175992370	3	2	726	1	0	0	0	0	1	0	0	0	3121	1580	55	3	19	3	CDHR2	5	175992370	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	18913877	175992370	4922890	36	46230											
ADAMTS2	9509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	178580530	178580530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	178580530	G	A	178580530	3	1	726	1	0	0	0	0	1	0	0	0	265	1116	39	1	2289	1	ADAMTS2	5	178580530	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	2588160	178580530	2334730	37	46231											
HLA-C	3107	mdanderson.org	37	6	31238859	31238859	+	Missense_Mutation	SNP	G	G	C	rs41555616		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	31238859	G	C	31238859	3	2	726	1	0	0	0	0	1	0	0	0	7204	1328	46	4	514	4	HLA-C	6	31238859	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10		31238859	139876208	38	46232											
HLA-DRB1	3123	mdanderson.org	37	6	32548534	32548534	+	Missense_Mutation	SNP	C	C	T	rs71547382		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	32548534	C	T	32548534	3	4	726	1	0	0	0	0	1	0	0	0	7215	681	24	2	60	2	HLA-DRB1	6	32548534	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	1309675	32548534	138566533	39	46233											
CAPN11	11131	hgsc.bcm.edu;bcgsc.ca	37	6	44137081	44137081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	44137081	G	T	44137081	3	4	726	1	0	0	0	0	1	0	0	0	2626	1203	42	4	162	4	CAPN11	6	44137081	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	11588547	44137081	126977986	40	46234											
ANKMY2	57037	ucsc.edu	37	7	16642116	16642116	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	16642116	T	G	16642116	3	3	726	1	0	0	0	0	1	0	0	0	635	1725	60	5	303	5	ANKMY2	7	16642116	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		16642116	142496547	41	46235											
PPP1R9A	55607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	7	94827677	94827677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	94827677	G	A	94827677	3	1	726	1	0	0	0	0	1	0	0	0	12388	1175	41	2	1789	2	PPP1R9A	7	94827677	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	78185561	94827677	64310986	42	46236											
DEFA6	1671	hgsc.bcm.edu	37	8	6783459	6783459	+	Silent	SNP	A	A	C	rs13439322	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	6783459	A	C	6783459	2	2	726	1	0	0	0	0	0	0	0	1	4395	59	3	5		5	DEFA6	8	6783459	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10		6783459	139580563	43	46237											
EBF2	64641	bcgsc.ca	37	8	25708131	25708131	+	Missense_Mutation	SNP	C	C	T	rs17054477	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	25708131	C	T	25708131	3	4	726	1	0	0	0	0	1	0	0	0	4883	652	23	1	60	1	EBF2	8	25708131	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	18924672	25708131	120655891	44	46238											
PCMTD1	115294	mdanderson.org	37	8	52733214	52733214	+	Missense_Mutation	SNP	A	A	C	rs200377849		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	52733214	A	C	52733214	3	2	726	1	0	0	0	0	1	0	0	0	11593	98	4	5	306	5	PCMTD1	8	52733214	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	27025083	52733214	93630808	45	46239											
C8orf47	203111	hgsc.bcm.edu	37	8	99102105	99102105	+	Missense_Mutation	SNP	A	A	G	rs11994440	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	99102105	A	G	99102105	3	3	726	1	0	0	0	0	1	0	0	0	2434	217	8	3	866	3	C8orf47	8	99102105	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	46368891	99102105	47261917	46	46240											
COL22A1	169044	hgsc.bcm.edu;ucsc.edu	37	8	139606435	139606435	+	Silent	SNP	G	G	A	rs115499018	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	139606435	G	A	139606435	2	1	726	1	0	0	0	0	0	0	0	1	3683	1045	37	1		1	COL22A1	8	139606435	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	40504330	139606435	6757587	47	46241											
DENND3	22898	ucsc.edu	37	8	142204326	142204326	+	Silent	SNP	C	C	G	rs1045248	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	142204326	C	G	142204326	2	3	726	1	0	0	0	0	0	0	0	1	4434	755	27	4		4	DENND3	8	142204326	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	2597891	142204326	4159696	48	46242											
ZNF658	26149	broad.mit.edu;mdanderson.org;bcgsc.ca	37	9	40774999	40774999	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	40774999	T	A	40774999	3	1	726	1	0	0	0	0	1	0	0	0	18081	1838	64	5	2907	5	ZNF658	9	40774999	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		40774999	100438432	49	46243											
PPP6C	5537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	9	127915854	127915854	+	Silent	SNP	G	G	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	127915854	G	A	127915854	2	1	726	1	0	0	0	0	0	0	0	1	12417	1219	43	2		2	PPP6C	9	127915854	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	87140855	127915854	13297577	50	46244											
ZBTB43	23099	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	9	129595572	129595572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	129595572	G	A	129595572	3	1	726	1	0	0	0	0	1	0	0	0	17556	1087	38	1	786	1	ZBTB43	9	129595572	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1679718	129595572	11617859	51	46245											
TDRD1	56165	hgsc.bcm.edu	37	10	115987678	115987678	+	Missense_Mutation	SNP	A	A	G	rs34112549	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	115987678	A	G	115987678	3	3	726	1	0	0	0	0	1	0	0	0	15742	449	16	3	3503	3	TDRD1	10	115987678	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10		115987678	19547069	52	46246											
OR51I2	390064	hgsc.bcm.edu	37	11	5475431	5475431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	5475431	T	A	5475431	3	1	726	1	0	0	0	0	1	0	0	0	11108	1551	54	5	715	5	OR51I2	11	5475431	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		5475431	129531085	53	46247											
DNHD1	144132	bcgsc.ca	37	11	6524072	6524072	+	Missense_Mutation	SNP	A	A	C	rs11605196	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	6524072	A	C	6524072	3	2	726	1	0	0	0	0	1	0	0	0	4670	188	7	5	842	5	DNHD1	11	6524072	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	1048641	6524072	128482444	54	46248											
PHF21A	51317	ucsc.edu	37	11	46001380	46001380	+	Silent	SNP	T	T	C	rs151038480		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	46001380	T	C	46001380	2	2	726	1	0	0	0	0	0	0	0	1	11840	1722	60	3		3	PHF21A	11	46001380	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10	39477308	46001380	89005136	55	46249											
CARD17	440068	mdanderson.org;bcgsc.ca	37	11	104971257	104971257	+	Missense_Mutation	SNP	G	G	A	rs12806837	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	104971257	G	A	104971257	3	1	726	1	0	0	0	0	1	0	0	0	2650	1145	40	1	83	1	CARD17	11	104971257	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	58969877	104971257	30035259	56	46250											
PRB1	5542	mdanderson.org	37	12	11508460	11508460	+	Silent	SNP	A	A	G	rs78738636		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	11508460	A	G	11508460	2	3	726	1	0	0	0	0	0	0	0	1	12452	69	3	3		3	PRB1	12	11508460	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10		11508460	122343435	57	46251											
PRB2	653247	mdanderson.org	37	12	11546625	11546625	+	Silent	SNP	A	A	G	rs200564286		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	11546625	A	G	11546625	2	3	726	1	0	0	0	0	0	0	0	1	12453	291	11	3		3	PRB2	12	11546625	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10	38165	11546625	122305270	58	46252											
IRS2	8660	ucsc.edu	37	13	110435914	110435914	+	Silent	SNP	G	G	A	rs12853546	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	110435914	G	A	110435914	2	1	726	1	0	0	0	0	0	0	0	1	7848	1103	39	1		1	IRS2	13	110435914	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10		110435914	4733964	59	46253											
DAAM1	23002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	59793702	59793702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	59793702	G	T	59793702	3	4	726	1	0	0	0	0	1	0	0	0	4217	1290	45	4	1407	4	DAAM1	14	59793702	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10		59793702	47555838	60	46254											
ERH	2079	bcgsc.ca	37	14	69861593	69861593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	69861593	G	T	69861593	3	4	726	1	0	0	0	0	1	0	0	0	5228	1203	42	4	286	4	ERH	14	69861593	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	10067891	69861593	37487947	61	46255											
DCAF4	26094	mdanderson.org	37	14	73422350	73422350	+	Silent	SNP	T	T	G	rs2806034	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	73422350	T	G	73422350	2	3	726	1	0	0	0	0	0	0	0	1	4272	1567	55	5		5	DCAF4	14	73422350	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10	3560757	73422350	33927190	62	46256											
YLPM1	56252	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	14	75265325	75265325	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	75265325	C	T	75265325	4	4	726	1	0	0	0	0	0	1	0	0	17498	644	23	1	3343	1	YLPM1	14	75265325	Nonsense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	1842975	75265325	32084215	63	46257											
DISP2	85455	mdanderson.org	37	15	40660192	40660192	+	Silent	SNP	C	C	T	rs8040755	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	40660192	C	T	40660192	2	4	726	1	0	0	0	0	0	0	0	1	4542	796	28	2		2	DISP2	15	40660192	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10		40660192	61871200	64	46258											
LIPC	3990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	58837951	58837951	+	Silent	SNP	C	C	T	rs149322349		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	58837951	C	T	58837951	2	4	726	1	0	0	0	0	0	0	0	1	8827	639	23	1		1	LIPC	15	58837951	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	18177759	58837951	43693441	65	46259											
CYP1A2	1544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	75042327	75042327	+	Missense_Mutation	SNP	C	C	T	rs138652540		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	75042327	C	T	75042327	3	4	726	1	0	0	0	0	1	0	0	0	4152	536	19	1	250	1	CYP1A2	15	75042327	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	16204376	75042327	27489065	66	46260											
RBBP6	5930	mdanderson.org	37	16	24583715	24583715	+	Silent	SNP	A	A	G	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	24583715	A	G	24583715	2	3	726	1	0	0	0	0	0	0	0	1	13116	69	3	3		3	RBBP6	16	24583715	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10		24583715	65771038	67	46261											
SPAG7	9552	mdanderson.org	37	17	4864114	4864114	+	Silent	SNP	T	T	C	rs61749470	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	4864114	T	C	4864114	2	2	726	1	0	0	0	0	0	0	0	1	14996	1606	56	3		3	SPAG7	17	4864114	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10		4864114	76331096	68	46262											
XAF1	54739	bcgsc.ca	37	17	6663894	6663894	+	Missense_Mutation	SNP	G	G	A	rs2271232	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	6663894	G	A	6663894	3	1	726	1	0	0	0	0	1	0	0	0	17431	1087	38	1	409	1	XAF1	17	6663894	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1799780	6663894	74531316	69	46263											
MYH4	4622	bcgsc.ca	37	17	10348354	10348354	+	Missense_Mutation	SNP	T	T	C	rs2277649	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	10348354	T	C	10348354	3	2	726	1	0	0	0	0	1	0	0	0	10044	1435	50	3	430	3	MYH4	17	10348354	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	3684460	10348354	70846856	70	46264											
ELAC2	60528	broad.mit.edu	37	17	12898343	12898343	+	Silent	SNP	C	C	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	12898343	C	T	12898343	2	4	726	1	0	0	0	0	0	0	0	1	5049	912	32	2		2	ELAC2	17	12898343	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	2549989	12898343	68296867	71	46265											
LRRC48	83450	bcgsc.ca	37	17	17896205	17896205	+	Missense_Mutation	SNP	C	C	T	rs4584886	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	17896205	C	T	17896205	3	4	726	1	0	0	0	0	1	0	0	0	9012	643	23	1	585	1	LRRC48	17	17896205	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	4997862	17896205	63299005	72	46266											
SLC5A10	125206	mdanderson.org	37	17	18918396	18918396	+	Silent	SNP	G	G	C	rs2074279	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	18918396	G	C	18918396	2	2	726	1	0	0	0	0	0	0	0	1	14675	1103	39	4		4	SLC5A10	17	18918396	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1022191	18918396	62276814	73	46267											
PSMD12	5718	broad.mit.edu	37	17	65340732	65340732	+	Missense_Mutation	SNP	A	A	G	rs2230680	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	65340732	A	G	65340732	3	3	726	1	0	0	0	0	1	0	0	0	12705	43	2	3	309	3	PSMD12	17	65340732	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	46422336	65340732	15854478	74	46268											
EVPL	2125	bcgsc.ca	37	17	74006474	74006474	+	Nonsense_Mutation	SNP	G	G	A	rs151046085		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	74006474	G	A	74006474	4	1	726	1	0	0	0	0	0	1	0	0	5294	1328	46	2	3293	2	EVPL	17	74006474	Nonsense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	8665742	74006474	7188736	75	46269											
P4HB	5034	hgsc.bcm.edu	37	17	79801890	79801891	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	-	79801891	AC	-	79801890	7	5	726	1	0	1	0	1	0	0	0	0	11366	404	14	0	5	0	P4HB	17	79801890	Frame_Shift_Del	DEL	AC	TCGA-KO-8417-01A-11D-2310-10	5795416	79801890	1393320	76	46270	680	2									
P4HB	5034	bcgsc.ca	37	17	79801891	79801892	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	-	79801892	AC	-	79801891	7	5	726	1	0	1	0	1	0	0	0	0	11366	465	17	0	6	0	P4HB	17	79801891	Frame_Shift_Del	DEL	AC	TCGA-KO-8417-01A-11D-2310-10	1	79801891	1393319	77	46271	680	2									
POTEC	388468	mdanderson.org	37	18	14542884	14542884	+	Missense_Mutation	SNP	T	T	C	rs2458862	bycluster;by2hit2allele	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	14542884	T	C	14542884	3	2	726	1	0	0	0	0	1	0	0	0	12269	1812	63	3	1410	3	POTEC	18	14542884	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		14542884	63534364	78	46272											
GRIN3B	116444	mdanderson.org	37	19	1009585	1009585	+	Missense_Mutation	SNP	C	C	G	rs10401454	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	1009585	C	G	1009585	3	3	726	1	0	0	0	0	1	0	0	0	6791	652	23	4	3150	4	GRIN3B	19	1009585	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10		1009585	58119398	79	46273											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	19	8994179	8994179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	8994179	C	T	8994179	3	4	726	1	0	0	0	0	1	0	0	0	9980	594	21	2	2097	2	MUC16	19	8994179	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	7984594	8994179	50134804	80	46274											
NUMBL	9253	mdanderson.org	37	19	41173898	41173898	+	Silent	SNP	T	T	C	rs79747129		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	41173898	T	C	41173898	2	2	726	1	0	0	0	0	0	0	0	1	10759	1722	60	3		3	NUMBL	19	41173898	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10	32179719	41173898	17955085	81	46275											
PSG4	5672	mdanderson.org	37	19	43709647	43709647	+	Silent	SNP	G	G	A	rs12985206	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	43709647	G	A	43709647	2	1	726	1	0	0	0	0	0	0	0	1	12667	987	35	2		2	PSG4	19	43709647	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	2535749	43709647	15419336	82	46276											
ZNF180	7733	broad.mit.edu	37	19	44982053	44982053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	44982053	G	T	44982053	3	4	726	1	0	0	0	0	1	0	0	0	17760	1252	44	4	1437	4	ZNF180	19	44982053	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1272406	44982053	14146930	83	46277											
ZNF577	84765	bcgsc.ca	37	19	52375849	52375849	+	Missense_Mutation	SNP	T	T	A	rs144158167		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	52375849	T	A	52375849	3	1	726	1	0	0	0	0	1	0	0	0	18021	1783	62	5	67	5	ZNF577	19	52375849	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	7393796	52375849	6753134	84	46278											
MAVS	57506	bcgsc.ca	37	20	3838399	3838399	+	Missense_Mutation	SNP	T	T	A	rs34591263	alternate_allele	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	3838399	T	A	3838399	3	1	726	1	0	0	0	0	1	0	0	0	9345	1580	55	5	241	5	MAVS	20	3838399	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		3838399	59187121	85	46279	681	2									
MAVS	57506	mdanderson.org;bcgsc.ca	37	20	3838400	3838400	+	Missense_Mutation	SNP	G	G	T	rs11905552	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	3838400	G	T	3838400	3	4	726	1	0	0	0	0	1	0	0	0	9345	1377	48	4	242	4	MAVS	20	3838400	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1	3838400	59187120	86	46280	681	2									
PPDPF	79144	hgsc.bcm.edu	37	20	62152686	62152687	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	CC	62152687	-	CC	62152686	7	5	726	1	0	1	1	0	0	0	0	0	12313	1551	54	0	27	0	PPDPF	20	62152686	Frame_Shift_Ins	INS	-	TCGA-KO-8417-01A-11D-2310-10	58314286	62152686	872834	87	46281											
SRMS	6725	bcgsc.ca	37	20	62173561	62173561	+	Missense_Mutation	SNP	C	C	G	rs310657	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	62173561	C	G	62173561	3	3	726	1	0	0	0	0	1	0	0	0	15164	536	19	4	581	4	SRMS	20	62173561	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	20875	62173561	851959	88	46282											
ERG	2078	mdanderson.org	37	21	39795360	39795360	+	Silent	SNP	C	C	T	rs200326224		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	39795360	C	T	39795360	2	4	726	1	0	0	0	0	0	0	0	1	5224	871	31	1		1	ERG	21	39795360	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10		39795360	8334535	89	46283											
KRTAP12-2	353323	bcgsc.ca	37	21	46086377	46086377	+	Missense_Mutation	SNP	A	A	G	rs2838622	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	46086377	A	G	46086377	3	3	726	1	0	0	0	0	1	0	0	0	8526	304	11	3	17	3	KRTAP12-2	21	46086377	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	6291017	46086377	2043518	90	46284											
CDC42EP1	11135	mdanderson.org	37	22	37964429	37964429	+	Missense_Mutation	SNP	T	T	C	rs62235034	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	37964429	T	C	37964429	3	2	726	1	0	0	0	0	1	0	0	0	3077	1551	54	3	784	3	CDC42EP1	22	37964429	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		37964429	13340137	91	46285											
BAIAP2L2	80115	mdanderson.org	37	22	38483172	38483172	+	Silent	SNP	G	G	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	38483172	G	T	38483172	2	4	726	1	0	0	0	0	0	0	0	1	1303	1219	43	4		4	BAIAP2L2	22	38483172	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	518743	38483172	12821394	92	46286	682	3									
BAIAP2L2	80115	mdanderson.org	37	22	38483174	38483174	+	Missense_Mutation	SNP	A	A	T	rs78489217	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	38483174	A	T	38483174	3	4	726	1	0	0	0	0	1	0	0	0	1303	275	10	5	389	5	BAIAP2L2	22	38483174	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	2	38483174	12821392	93	46287	682	3									
BAIAP2L2	80115	mdanderson.org	37	22	38483180	38483180	+	Missense_Mutation	SNP	A	A	G	rs111783779		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	38483180	A	G	38483180	3	3	726	1	0	0	0	0	1	0	0	0	1303	304	11	3	395	3	BAIAP2L2	22	38483180	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	6	38483180	12821386	94	46288	682	3									
PHF21B	112885	hgsc.bcm.edu	37	22	45283998	45283998	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	45283998	C	G	45283998	3	3	726	1	0	0	0	0	1	0	0	0	11841	893	31	4	569	4	PHF21B	22	45283998	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	6800818	45283998	6020568	95	46289											
CXorf22	170063	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	35969403	35969403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	A	35969403	G	A	35969403	3	1	726	1	0	0	0	0	1	0	0	0	4104	1145	40	1	830	1	CXorf22	23	35969403	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10		35969403	119301157	96	46290											
PDZD11	51248	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	69506937	69506937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	69506937	G	T	69506937	3	4	726	1	0	0	0	0	1	0	0	0	11707	1319	46	4	8	4	PDZD11	23	69506937	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	33537534	69506937	85763623	97	46291											
RPS6KA6	27330	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	X	83361951	83361951	+	Silent	SNP	A	A	G	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	G	83361951	A	G	83361951	2	3	726	1	0	0	0	0	0	0	0	1	13668	407	15	3		3	RPS6KA6	23	83361951	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10	13855014	83361951	71908609	98	46292											
RBMX	27316	mdanderson.org	37	X	135956462	135956462	+	Missense_Mutation	SNP	G	G	C	rs74667874		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	C	135956462	G	C	135956462	3	2	726	1	0	0	0	0	1	0	0	0	13164	1058	37	4	219	4	RBMX	23	135956462	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	52594511	135956462	19314098	99	46293	683	2									
RBMX	27316	mdanderson.org	37	X	135956467	135956467	+	Missense_Mutation	SNP	C	C	T	rs75385615		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4	T	135956467	C	T	135956467	3	4	726	1	0	0	0	0	1	0	0	0	13164	565	20	2	224	2	RBMX	23	135956467	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	5	135956467	19314093	100	46294	683	2									
RPS6KA1	6195	ucsc.edu	37	1	26873742	26873742	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	26873742	G	A	26873742	2	1	727	1	0	0	0	0	0	0	0	1	13663	1277	45	2		2	RPS6KA1	1	26873742	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10		26873742	222376879	1	46295											
TRIM62	55223	broad.mit.edu	37	1	33625315	33625315	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	33625315	C	T	33625315	2	4	727	1	0	0	0	0	0	0	0	1	16549	581	21	2		2	TRIM62	1	33625315	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	6751573	33625315	215625306	2	46296											
FHL3	2275	broad.mit.edu	37	1	38463363	38463363	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	38463363	G	T	38463363	2	4	727	1	0	0	0	0	0	0	0	1	5887	1335	47	4		4	FHL3	1	38463363	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	4838048	38463363	210787258	3	46297											
LPAR3	23566	broad.mit.edu	37	1	85331710	85331710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	85331710	T	G	85331710	3	3	727	1	0	0	0	0	1	0	0	0	8913	1435	50	5	975	5	LPAR3	1	85331710	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	46868347	85331710	163918911	4	46298											
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112999075	112999075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	112999075	A	G	112999075	3	3	727	1	0	0	0	0	1	0	0	0	4048	64	3	3	975	3	CTTNBP2NL	1	112999075	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	27667365	112999075	136251546	5	46299											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145561841	145561841	+	Missense_Mutation	SNP	G	G	A	rs201815402	alternate_allele	TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	145561841	G	A	145561841	3	1	727	1	0	0	0	0	1	0	0	0	664	1116	39	1	1567	1	ANKRD35	1	145561841	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	32562766	145561841	103688780	6	46300											
PEAR1	375033	broad.mit.edu	37	1	156879832	156879832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	156879832	G	A	156879832	3	1	727	1	0	0	0	0	1	0	0	0	11719	1377	48	2	1656	2	PEAR1	1	156879832	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	11317991	156879832	92370789	7	46301											
DDR2	4921	broad.mit.edu	37	1	162688920	162688920	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	162688920	G	C	162688920	3	2	727	1	0	0	0	0	1	0	0	0	4339	971	34	4	69	4	DDR2	1	162688920	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	5809088	162688920	86561701	8	46302											
ILDR2	387597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	166890003	166890003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	166890003	C	T	166890003	3	4	727	1	0	0	0	0	1	0	0	0	7717	884	31	1	102	1	ILDR2	1	166890003	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	4201083	166890003	82360618	9	46303											
TPR	7175	hgsc.bcm.edu;broad.mit.edu	37	1	186316562	186316562	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	186316562	A	G	186316562	2	3	727	1	0	0	0	0	0	0	0	1	16428	214	8	3		3	TPR	1	186316562	Silent	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	19426559	186316562	62934059	10	46304											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197072290	197072290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	197072290	A	G	197072290	3	3	727	1	0	0	0	0	1	0	0	0	1056	362	13	3	4386	3	ASPM	1	197072290	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	10755728	197072290	52178331	11	46305											
CR1L	1379	broad.mit.edu	37	1	207890832	207890832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	207890832	G	T	207890832	3	4	727	1	0	0	0	0	1	0	0	0	3843	971	34	4	1480	4	CR1L	1	207890832	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	10818542	207890832	41359789	12	46306											
IFT172	26160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27702392	27702392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	27702392	T	A	27702392	3	1	727	1	0	0	0	0	1	0	0	0	7564	1406	49	5	4416	5	IFT172	2	27702392	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		27702392	215496981	13	46307											
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	85361150	85361150	+	Silent	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	85361150	C	G	85361150	2	3	727	1	0	0	0	0	0	0	0	1	15709	726	26	4		4	TCF7L1	2	85361150	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	57658758	85361150	157838223	14	46308											
RNF103	7844	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	86832185	86832185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	86832185	A	G	86832185	3	3	727	1	0	0	0	0	1	0	0	0	13436	101	4	3	1222	3	RNF103	2	86832185	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	1471035	86832185	156367188	15	46309											
MALL	7851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	110873286	110873286	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	110873286	G	A	110873286	2	1	727	1	0	0	0	0	0	0	0	1	9208	1049	37	1		1	MALL	2	110873286	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	24041101	110873286	132326087	16	46310											
SLC20A1	6574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113418053	113418053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	113418053	T	C	113418053	3	2	727	1	0	0	0	0	1	0	0	0	14451	1551	54	3	1727	3	SLC20A1	2	113418053	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	2544767	113418053	129781320	17	46311											
INHBB	3625	hgsc.bcm.edu	37	2	121106693	121106693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	121106693	G	A	121106693	3	1	727	1	0	0	0	0	1	0	0	0	7749	1116	39	1	473	1	INHBB	2	121106693	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	7688640	121106693	122092680	18	46312											
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	197878244	197878244	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	-	197878244	G	-	197878244	7	5	727	1	0	1	0	1	0	0	0	0	672	1290	45	0	955	0	ANKRD44	2	197878244	Frame_Shift_Del	DEL	G	TCGA-KV-A6GD-01A-11D-A31X-10	76771551	197878244	45321129	19	46313											
EEF1B2	1933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207027278	207027278	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	207027278	A	T	207027278	3	4	727	1	0	0	0	0	1	0	0	0	4927	449	16	5	481	5	EEF1B2	2	207027278	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	9149034	207027278	36172095	20	46314											
COL4A3	1285	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228131751	228131751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	228131751	G	T	228131751	3	4	727	1	0	0	0	0	1	0	0	0	3693	1232	43	4	1541	4	COL4A3	2	228131751	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	21104473	228131751	15067622	21	46315											
RAB17	64284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238494741	238494741	+	Silent	SNP	C	C	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	238494741	C	A	238494741	2	1	727	1	0	0	0	0	0	0	0	1	12915	465	17	4		4	RAB17	2	238494741	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	10362990	238494741	4704632	22	46316											
HDLBP	3069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242173343	242173343	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	242173343	G	A	242173343	2	1	727	1	0	0	0	0	0	0	0	1	7032	1252	44	2		2	HDLBP	2	242173343	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	3678602	242173343	1026030	23	46317											
SLC6A6	6533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14508107	14508107	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	14508107	A	G	14508107	2	3	727	1	0	0	0	0	0	0	0	1	14701	175	7	3		3	SLC6A6	3	14508107	Silent	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10		14508107	183514323	24	46318											
TMEM115	11070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50396218	50396218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	50396218	A	G	50396218	3	3	727	1	0	0	0	0	1	0	0	0	16041	188	7	3	786	3	TMEM115	3	50396218	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	35888111	50396218	147626212	25	46319											
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu	37	3	152554007	152554007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	152554007	A	G	152554007	3	3	727	1	0	0	0	0	1	0	0	0	11353	188	7	3	438	3	P2RY1	3	152554007	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	102157789	152554007	45468423	26	46320											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1807653	1807653	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	1807653	T	A	1807653	3	1	727	1	0	0	0	0	1	0	0	0	5874	1606	56	5	2023	5	FGFR3	4	1807653	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		1807653	189346623	27	46321											
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	72413388	72413388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	72413388	T	C	72413388	3	2	727	1	0	0	0	0	1	0	0	0	14669	1609	56	3	2840	3	SLC4A4	4	72413388	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	70605735	72413388	118740888	28	46322											
NKD2	85409	broad.mit.edu	37	5	1038447	1038449	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	-	1038449	CAC	-	1038447	7	5	727	1	0	1	0	1	0	0	0	0	10449	710	25	0	1353	0	NKD2	5	1038447	In_Frame_Del	DEL	CAC	TCGA-KV-A6GD-01A-11D-A31X-10		1038447	179876813	29	46323											
TRIO	7204	broad.mit.edu	37	5	14358383	14358385	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	-	14358385	CAG	-	14358383	7	5	727	1	0	1	0	1	0	0	0	0	16564	595	21	0	2189	0	TRIO	5	14358383	In_Frame_Del	DEL	CAG	TCGA-KV-A6GD-01A-11D-A31X-10	13319936	14358383	166556877	30	46324											
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	50680410	50680410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	50680410	A	G	50680410	3	3	727	1	0	0	0	0	1	0	0	0	7863	130	5	3	70	3	ISL1	5	50680410	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	36322027	50680410	130234850	31	46325											
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	134060676	134060676	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	134060676	G	C	134060676	3	2	727	1	0	0	0	0	1	0	0	0	14007	933	33	4	3264	4	SEC24A	5	134060676	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	83380266	134060676	46854584	32	46326											
HNRNPA0	10949	broad.mit.edu	37	5	137088931	137088931	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	137088931	G	A	137088931	2	1	727	1	0	0	0	0	0	0	0	1	7263	1074	38	1		1	HNRNPA0	5	137088931	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	3028255	137088931	43826329	33	46327											
AGXT2L2	85007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	177649897	177649897	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	177649897	T	C	177649897	2	2	727	1	0	0	0	0	0	0	0	1	407	1538	54	3		3	AGXT2L2	5	177649897	Silent	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	40560966	177649897	3265363	34	46328											
TBC1D7	51256	broad.mit.edu;ucsc.edu	37	6	13307840	13307840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	13307840	A	T	13307840	3	4	727	1	0	0	0	0	1	0	0	0	15636	40	2	5	236	5	TBC1D7	6	13307840	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10		13307840	157807227	35	46329											
SESN1	27244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	109309823	109309823	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	-	109309823	T	-	109309823	7	5	727	1	0	1	0	1	0	0	0	0	14137	1725	60	0	171	0	SESN1	6	109309823	Frame_Shift_Del	DEL	T	TCGA-KV-A6GD-01A-11D-A31X-10	96001983	109309823	61805244	36	46330											
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	143090738	143090738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	143090738	G	T	143090738	3	4	727	1	0	0	0	0	1	0	0	0	7194	1000	35	4	2226	4	HIVEP2	6	143090738	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	33780915	143090738	28024329	37	46331											
EIF2AK1	27102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6084205	6084205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	6084205	T	G	6084205	3	3	727	1	0	0	0	0	1	0	0	0	4998	1435	50	5	1210	5	EIF2AK1	7	6084205	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		6084205	153054458	38	46332											
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143049049	143049049	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	143049049	G	A	143049049	2	1	727	1	0	0	0	0	0	0	0	1	3464	1277	45	2		2	CLCN1	7	143049049	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	136964844	143049049	16089614	39	46333											
ANK1	286	ucsc.edu	37	8	41566447	41566447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	41566447	T	C	41566447	3	2	727	1	0	0	0	0	1	0	0	0	620	1551	54	3	4256	3	ANK1	8	41566447	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		41566447	104797575	40	46334											
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103287958	103287958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	103287958	T	C	103287958	3	2	727	1	0	0	0	0	1	0	0	0	16917	1435	50	3	1847	3	UBR5	8	103287958	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	61721511	103287958	43076064	41	46335											
SNTB1	6641	broad.mit.edu	37	8	121706046	121706046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	121706046	C	T	121706046	3	4	727	1	0	0	0	0	1	0	0	0	14885	797	28	2	966	2	SNTB1	8	121706046	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	18418088	121706046	24657976	42	46336											
TRPM3	80036	broad.mit.edu;bcgsc.ca	37	9	73151135	73151136	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	73151136	-	T	73151135	7	5	727	1	0	1	1	0	0	0	0	0	16599	922	32	0	269	0	TRPM3	9	73151135	Frame_Shift_Ins	INS	-	TCGA-KV-A6GD-01A-11D-A31X-10		73151135	68062296	43	46337											
CTSL1	1514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90344596	90344596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	90344596	C	T	90344596	3	4	727	1	0	0	0	0	1	0	0	0	4040	739	26	2	748	2	CTSL1	9	90344596	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	17193461	90344596	50868835	44	46338											
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	43659419	G	T	43659419	3	4	727	1	0	0	0	0	1	0	0	0	3941	1281	45	4	1100	4	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10		43659419	91875328	45	46339											
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91177012	91177012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	91177012	A	G	91177012	3	3	727	1	0	0	0	0	1	0	0	0	7532	217	8	3	62	3	IFIT5	10	91177012	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	47517593	91177012	44357735	46	46340											
XPNPEP1	7511	broad.mit.edu	37	10	111642221	111642221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	111642221	G	A	111642221	3	1	727	1	0	0	0	0	1	0	0	0	17454	1203	42	2	1038	2	XPNPEP1	10	111642221	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	20465209	111642221	23892526	47	46341											
OR52B2	255725	broad.mit.edu	37	11	6191110	6191110	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	6191110	G	A	6191110	2	1	727	1	0	0	0	0	0	0	0	1	11118	1103	39	1		1	OR52B2	11	6191110	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10		6191110	128815406	48	46342											
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17542471	17542471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	17542471	A	C	17542471	3	2	727	1	0	0	0	0	1	0	0	0	17046	69	3	5	1677	5	USH1C	11	17542471	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	11351361	17542471	117464045	49	46343											
OR5M3	219482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56237348	56237348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	56237348	A	T	56237348	3	4	727	1	0	0	0	0	1	0	0	0	11182	188	7	5	299	5	OR5M3	11	56237348	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	38694877	56237348	78769168	50	46344	684	2									
OR5M3	219482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56237358	56237358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	56237358	T	A	56237358	3	1	727	1	0	0	0	0	1	0	0	0	11182	1696	59	5	309	5	OR5M3	11	56237358	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	10	56237358	78769158	51	46345	684	2									
SSRP1	6749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57100282	57100282	+	Silent	SNP	C	C	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	57100282	C	A	57100282	2	1	727	1	0	0	0	0	0	0	0	1	15206	639	23	4		4	SSRP1	11	57100282	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	862924	57100282	77906234	52	46346											
SYVN1	84447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64900251	64900251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	-	64900251	T	-	64900251	7	5	727	1	0	1	0	1	0	0	0	0	15499	1449	50	0	1522	0	SYVN1	11	64900251	Frame_Shift_Del	DEL	T	TCGA-KV-A6GD-01A-11D-A31X-10	7799969	64900251	70106265	53	46347											
FRMD8	83786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65168213	65168213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	65168213	C	T	65168213	3	4	727	1	0	0	0	0	1	0	0	0	6063	768	27	1	976	1	FRMD8	11	65168213	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	267962	65168213	69838303	54	46348											
MUS81	80198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65631192	65631192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	65631192	G	A	65631192	3	1	727	1	0	0	0	0	1	0	0	0	9995	1014	35	2	995	2	MUS81	11	65631192	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	462979	65631192	69375324	55	46349											
TCIRG1	10312	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67811752	67811752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	67811752	G	A	67811752	3	1	727	1	0	0	0	0	1	0	0	0	15715	1059	37	1	991	1	TCIRG1	11	67811752	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	2180560	67811752	67194764	56	46350											
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71948603	71948603	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	71948603	A	G	71948603	2	3	727	1	0	0	0	0	0	0	0	1	7768	175	7	3		3	INPPL1	11	71948603	Silent	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	4136851	71948603	63057913	57	46351											
ARAP1	116985	broad.mit.edu;ucsc.edu	37	11	72423580	72423580	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	72423580	C	G	72423580	3	3	727	1	0	0	0	0	1	0	0	0	838	536	19	4	3691	4	ARAP1	11	72423580	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	474977	72423580	62582936	58	46352											
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73796809	73796809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	73796809	C	G	73796809	3	3	727	1	0	0	0	0	1	0	0	0	2156	478	17	4	2171	4	C2CD3	11	73796809	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	1373229	73796809	61209707	59	46353											
C11orf30	56946	broad.mit.edu	37	11	76183839	76183839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	76183839	G	T	76183839	3	4	727	1	0	0	0	0	1	0	0	0	1638	1377	48	4	1089	4	C11orf30	11	76183839	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	2387030	76183839	58822677	60	46354											
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	95825407	C	T	95825407	2	4	727	1	0	0	0	0	0	0	0	1	9213	796	28	2		2	MAML2	11	95825407	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	19641568	95825407	39181109	61	46355											
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102100555	102100555	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	102100555	G	T	102100555	4	4	727	1	0	0	0	0	0	1	0	0	17478	1001	35	4	1445	4	YAP1	11	102100555	Nonsense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	6275148	102100555	32905961	62	46356											
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128933815	128933815	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	128933815	A	G	128933815	2	3	727	1	0	0	0	0	0	0	0	1	881	175	7	3		3	ARHGAP32	11	128933815	Silent	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	26833260	128933815	6072701	63	46357											
CLSTN3	9746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7302198	7302198	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	7302198	T	C	7302198	2	2	727	1	0	0	0	0	0	0	0	1	3565	1432	50	3		3	CLSTN3	12	7302198	Silent	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		7302198	126549697	64	46358											
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	62954577	62954577	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	62954577	T	A	62954577	3	1	727	1	0	0	0	0	1	0	0	0	9707	1522	53	5	3818	5	MON2	12	62954577	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	55652379	62954577	70897318	65	46359											
MRPS31	10240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41323388	41323388	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	41323388	A	T	41323388	3	4	727	1	0	0	0	0	1	0	0	0	9848	101	4	5	351	5	MRPS31	13	41323388	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10		41323388	73846490	66	46360											
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	111117912	111117912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	111117912	T	A	111117912	3	1	727	1	0	0	0	0	1	0	0	0	3692	1783	62	5	2031	5	COL4A2	13	111117912	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	69794524	111117912	4051966	67	46361											
GTF2A1	2957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81659105	81659105	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	81659105	T	A	81659105	3	1	727	1	0	0	0	0	1	0	0	0	6859	1841	64	5	451	5	GTF2A1	14	81659105	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		81659105	25690435	68	46362											
SETD3	84193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	99929881	99929881	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	99929881	C	T	99929881	2	4	727	1	0	0	0	0	0	0	0	1	14145	564	20	2		2	SETD3	14	99929881	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	18270776	99929881	7419659	69	46363											
DMXL2	23312	broad.mit.edu	37	15	51828388	51828388	+	Silent	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	51828388	T	G	51828388	2	3	727	1	0	0	0	0	0	0	0	1	4597	1799	63	5		5	DMXL2	15	51828388	Silent	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		51828388	50703004	70	46364											
ONECUT1	3175	broad.mit.edu	37	15	53081865	53081867	+	In_Frame_Del	DEL	GGT	GGT	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	-	53081867	GGT	-	53081865	7	5	727	1	0	1	0	1	0	0	0	0	10875	1115	39	0	1188	0	ONECUT1	15	53081865	In_Frame_Del	DEL	GGT	TCGA-KV-A6GD-01A-11D-A31X-10	1253477	53081865	49449527	71	46365											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75705130	75705130	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	75705130	G	A	75705130	4	1	727	1	0	0	0	0	0	1	0	0	14338	1299	45	2	3159	2	SIN3A	15	75705130	Nonsense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	22623265	75705130	26826262	72	46366											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	79350728	79350728	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	79350728	A	T	79350728	3	4	727	1	0	0	0	0	1	0	0	0	13085	72	3	5	3446	5	RASGRF1	15	79350728	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	3645598	79350728	23180664	73	46367											
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	9858489	9858489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	9858489	T	C	9858489	3	2	727	1	0	0	0	0	1	0	0	0	6786	1580	55	3	1486	3	GRIN2A	16	9858489	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		9858489	80496264	74	46368											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31373395	31373395	+	Splice_Site	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	31373395	G	A	31373395	5	1	727	1	0	0	0	0	0	0	1	0	7896	1014	35	2	1128	2	ITGAX	16	31373395	Splice_Site	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	21514906	31373395	58981358	75	46369											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31383064	31383064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	31383064	G	A	31383064	3	1	727	1	0	0	0	0	1	0	0	0	7896	1116	39	1	2185	1	ITGAX	16	31383064	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	9669	31383064	58971689	76	46370											
MFAP4	4239	broad.mit.edu	37	17	19288499	19288499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	19288499	C	T	19288499	3	4	727	1	0	0	0	0	1	0	0	0	9524	768	27	1	342	1	MFAP4	17	19288499	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10		19288499	61906711	77	46371											
PSMD11	5717	broad.mit.edu	37	17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	30771555	C	T	30771555	3	4	727	1	0	0	0	0	1	0	0	0	12704	768	27	1	16	1	PSMD11	17	30771555	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	11483056	30771555	50423655	78	46372											
COL1A1	1277	broad.mit.edu;bcgsc.ca	37	17	48277127	48277128	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	AT	48277128	GC	AT	48277127	3	1	727	1	0	0	0	0	1	0	0	0	3679	1195	42	2	4309	2	COL1A1	17	48277127	Missense_Mutation	DNP	GC	TCGA-KV-A6GD-01A-11D-A31X-10	17505572	48277127	32918083	79	46373											
NETO1	81832	hgsc.bcm.edu;bcgsc.ca	37	18	70450990	70450990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	70450990	A	T	70450990	3	4	727	1	0	0	0	0	1	0	0	0	10346	72	3	5	826	5	NETO1	18	70450990	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10		70450990	7626258	80	46374											
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	2226194	2226194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	2226194	C	T	2226194	3	4	727	1	0	0	0	0	1	0	0	0	4711	768	27	1	3780	1	DOT1L	19	2226194	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10		2226194	56902789	81	46375											
PDCD2L	84306	broad.mit.edu	37	19	34895341	34895341	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	34895341	G	T	34895341	2	4	727	1	0	0	0	0	0	0	0	1	11627	1103	39	4		4	PDCD2L	19	34895341	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	32669147	34895341	24233642	82	46376											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38948847	38948847	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	38948847	C	G	38948847	4	3	727	1	0	0	0	0	0	1	0	0	13781	518	18	4	2152	4	RYR1	19	38948847	Nonsense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	4053506	38948847	20180136	83	46377											
PSG5	5673	hgsc.bcm.edu;broad.mit.edu	37	19	43679366	43679366	+	Splice_Site	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	43679366	C	T	43679366	5	4	727	1	0	0	0	0	0	0	1	0	12668	521	18	2	50	2	PSG5	19	43679366	Splice_Site	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	4730519	43679366	15449617	84	46378											
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56487643	56487643	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	56487643	C	T	56487643	2	4	727	1	0	0	0	0	0	0	0	1	10490	506	18	2		2	NLRP8	19	56487643	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	12808277	56487643	2641340	85	46379											
ACTR5	79913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37383625	37383625	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	C	37383625	T	C	37383625	2	2	727	1	0	0	0	0	0	0	0	1	215	1490	52	3		3	ACTR5	20	37383625	Silent	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		37383625	25641895	86	46380											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47361658	47361658	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	47361658	G	A	47361658	2	1	727	1	0	0	0	0	0	0	0	1	12486	1164	41	2		2	PREX1	20	47361658	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	9978033	47361658	15663862	87	46381											
GNAS	2778	broad.mit.edu	37	20	57429158	57429158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	57429158	G	A	57429158	3	1	727	1	0	0	0	0	1	0	0	0	6517	1087	38	1	1582	1	GNAS	20	57429158	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	10067500	57429158	5596362	88	46382											
SLC25A1	6576	broad.mit.edu	37	22	19165669	19165669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	G	19165669	T	G	19165669	3	3	727	1	0	0	0	0	1	0	0	0	14484	1696	59	5	788	5	SLC25A1	22	19165669	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		19165669	32138897	89	46383											
GSTT1	2952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24384206	24384206	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	24384206	A	T	24384206	3	4	727	1	0	0	0	0	1	0	0	0	6852	188	7	5	716	5	GSTT1	22	24384206	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	5218537	24384206	26920360	90	46384											
CCDC117	150275	broad.mit.edu;bcgsc.ca	37	22	29176936	29176936	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	A	29176936	T	A	29176936	3	1	727	1	0	0	0	0	1	0	0	0	2756	1739	60	5	250	5	CCDC117	22	29176936	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	4792730	29176936	22127630	91	46385											
RP2	6102	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	46696623	46696623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	T	46696623	G	T	46696623	3	4	727	1	0	0	0	0	1	0	0	0	13547	1174	41	4	90	4	RP2	23	46696623	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10		46696623	108573937	92	46386											
CASZ1	54897	broad.mit.edu	37	1	10714185	10714185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	10714185	G	T	10714185	3	4	728	1	0	0	0	0	1	0	0	0	2687	1136	40	4	3398	4	CASZ1	1	10714185	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		10714185	238536436	1	46387											
CTTNBP2NL	55917	broad.mit.edu	37	1	112999438	112999438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	112999438	G	T	112999438	3	4	728	1	0	0	0	0	1	0	0	0	4048	971	34	4	1338	4	CTTNBP2NL	1	112999438	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	102285253	112999438	136251183	2	46388											
C1orf112	55732	bcgsc.ca	37	1	169771829	169771829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	169771829	A	T	169771829	3	4	728	1	0	0	0	0	1	0	0	0	1987	101	4	5	140	5	C1orf112	1	169771829	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	56772391	169771829	79478792	3	46389											
HMCN1	83872	broad.mit.edu	37	1	186023105	186023105	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	186023105	T	G	186023105	3	3	728	1	0	0	0	0	1	0	0	0	7227	1432	50	5	7023	5	HMCN1	1	186023105	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	16251276	186023105	63227516	4	46390											
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204413511	204413511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	204413511	A	G	204413511	3	3	728	1	0	0	0	0	1	0	0	0	11917	101	4	3	2252	3	PIK3C2B	1	204413511	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	18390406	204413511	44837110	5	46391											
HLX	3142	broad.mit.edu	37	1	221057861	221057861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	221057861	G	A	221057861	3	1	728	1	0	0	0	0	1	0	0	0	7223	1116	39	1	1296	1	HLX	1	221057861	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	16644350	221057861	28192760	6	46392											
TLR5	7100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223286235	223286235	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	223286235	T	A	223286235	3	1	728	1	0	0	0	0	1	0	0	0	15966	1696	59	5	2441	5	TLR5	1	223286235	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	2228374	223286235	25964386	7	46393											
SIPA1L2	57568	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232539257	232539257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	232539257	C	T	232539257	3	4	728	1	0	0	0	0	1	0	0	0	14343	623	22	2	303	2	SIPA1L2	1	232539257	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	9253022	232539257	16711364	8	46394											
SLC30A3	7781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27480036	27480036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	27480036	G	C	27480036	3	2	728	1	0	0	0	0	1	0	0	0	14569	1000	35	4	419	4	SLC30A3	2	27480036	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		27480036	215719337	9	46395											
FBXO11	80204	broad.mit.edu;bcgsc.ca	37	2	48132850	48132850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	48132850	C	G	48132850	3	3	728	1	0	0	0	0	1	0	0	0	5734	536	19	4	2955	4	FBXO11	2	48132850	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	20652814	48132850	195066523	10	46396											
CSRNP3	80034	broad.mit.edu	37	2	166535409	166535409	+	Missense_Mutation	SNP	A	A	G	rs144629858		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	166535409	A	G	166535409	3	3	728	1	0	0	0	0	1	0	0	0	3967	449	16	3	918	3	CSRNP3	2	166535409	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	118402559	166535409	76663964	11	46397											
AGPS	8540	broad.mit.edu	37	2	178257705	178257705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	178257705	C	T	178257705	3	4	728	1	0	0	0	0	1	0	0	0	394	739	26	2	190	2	AGPS	2	178257705	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	11722296	178257705	64941668	12	46398											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179424419	179424419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	179424419	T	A	179424419	3	1	728	1	0	0	0	0	1	0	0	0	16747	1841	64	5	21687	5	TTN	2	179424419	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	1166714	179424419	63774954	13	46399											
EDEM1	9695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	5229984	5229984	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	5229984	C	G	5229984	3	3	728	1	0	0	0	0	1	0	0	0	4913	623	22	4	496	4	EDEM1	3	5229984	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10		5229984	192792446	14	46400											
ACY1	95	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52022828	52022828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	52022828	C	A	52022828	3	1	728	1	0	0	0	0	1	0	0	0	226	652	23	4	1098	4	ACY1	3	52022828	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	46792844	52022828	145999602	15	46401											
NT5DC2	64943	broad.mit.edu	37	3	52558884	52558884	+	Missense_Mutation	SNP	G	G	A	rs201813711		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	52558884	G	A	52558884	3	1	728	1	0	0	0	0	1	0	0	0	10698	1087	38	1	320	1	NT5DC2	3	52558884	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	536056	52558884	145463546	16	46402											
MCM2	4171	broad.mit.edu	37	3	127323557	127323557	+	Missense_Mutation	SNP	C	C	T	rs201721106		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	127323557	C	T	127323557	3	4	728	1	0	0	0	0	1	0	0	0	9393	759	27	1	353	1	MCM2	3	127323557	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	74764673	127323557	70698873	17	46403											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129281631	129281631	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	129281631	A	G	129281631	2	3	728	1	0	0	0	0	0	0	0	1	12134	144	5	3		3	PLXND1	3	129281631	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	1958074	129281631	68740799	18	46404											
TNIK	23043	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	170846580	170846580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	170846580	G	A	170846580	3	1	728	1	0	0	0	0	1	0	0	0	16325	1232	43	2	2458	2	TNIK	3	170846580	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	41564949	170846580	27175850	19	46405											
SEL1L3	23231	broad.mit.edu	37	4	25760681	25760681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	25760681	T	A	25760681	3	1	728	1	0	0	0	0	1	0	0	0	14025	1754	61	5	449	5	SEL1L3	4	25760681	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		25760681	165393595	20	46406											
SLC30A5	64924	bcgsc.ca	37	5	68413165	68413165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	68413165	A	G	68413165	3	3	728	1	0	0	0	0	1	0	0	0	14571	217	8	3	1511	3	SLC30A5	5	68413165	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10		68413165	112502095	21	46407											
GPR150	285601	broad.mit.edu	37	5	94957233	94957233	+	Silent	SNP	A	A	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	94957233	A	C	94957233	2	2	728	1	0	0	0	0	0	0	0	1	6663	146	6	5		5	GPR150	5	94957233	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	26544068	94957233	85958027	22	46408											
KCNN2	3781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	113740442	113740442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	113740442	A	G	113740442	3	3	728	1	0	0	0	0	1	0	0	0	8086	101	4	3	900	3	KCNN2	5	113740442	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	18783209	113740442	67174818	23	46409											
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	6222265	6222266	+	Splice_Site	INS	-	-	CACA	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	CACA	6222266	-	CACA	6222265	8	5	728	1	0	1	1	0	0	0	1	0	5342	521	18	0	1117	0	F13A1	6	6222265	Splice_Site	INS	-	TCGA-KV-A6GE-01A-11D-A31X-10		6222265	164892802	24	46410											
HIST1H1E	3008	broad.mit.edu	37	6	26157244	26157244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	26157244	C	T	26157244	3	4	728	1	0	0	0	0	1	0	0	0	7133	739	26	2	628	2	HIST1H1E	6	26157244	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	19934979	26157244	144957823	25	46411											
MDGA1	266727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37622225	37622225	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	37622225	G	T	37622225	2	4	728	1	0	0	0	0	0	0	0	1	9413	1219	43	4		4	MDGA1	6	37622225	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	11464981	37622225	133492842	26	46412											
FILIP1	27145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76023889	76023889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	76023889	T	A	76023889	3	1	728	1	0	0	0	0	1	0	0	0	5901	1722	60	5	1990	5	FILIP1	6	76023889	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	38401664	76023889	95091178	27	46413											
USP45	85015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	99894085	99894085	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	99894085	T	C	99894085	2	2	728	1	0	0	0	0	0	0	0	1	17088	1432	50	3		3	USP45	6	99894085	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	23870196	99894085	71220982	28	46414											
ENPP1	5167	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	132211511	132211511	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	-	132211511	G	-	132211511	7	5	728	1	0	1	0	1	0	0	0	0	5131	943	33	0	2736	0	ENPP1	6	132211511	Frame_Shift_Del	DEL	G	TCGA-KV-A6GE-01A-11D-A31X-10	32317426	132211511	38903556	29	46415	685	2									
ENPP1	5167	bcgsc.ca	37	6	132211512	132211512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	132211512	A	T	132211512	3	4	728	1	0	0	0	0	1	0	0	0	5131	246	9	5	2737	5	ENPP1	6	132211512	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	1	132211512	38903555	30	46416	685	2									
COPS6	10980	ucsc.edu;bcgsc.ca	37	7	99686962	99686962	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	99686962	T	C	99686962	2	2	728	1	0	0	0	0	0	0	0	1	3739	1538	54	3		3	COPS6	7	99686962	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		99686962	59451701	31	46417											
FLNC	2318	broad.mit.edu	37	7	128483884	128483885	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	128483885	-	G	128483884	7	5	728	1	0	1	1	0	0	0	0	0	5942	275	10	0	2920	0	FLNC	7	128483884	Frame_Shift_Ins	INS	-	TCGA-KV-A6GE-01A-11D-A31X-10	28796922	128483884	30654779	32	46418											
ZNF425	155054	broad.mit.edu	37	7	148800800	148800800	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	148800800	A	G	148800800	2	3	728	1	0	0	0	0	0	0	0	1	17911	59	3	3		3	ZNF425	7	148800800	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	20316916	148800800	10337863	33	46419											
TGS1	96764	broad.mit.edu;bcgsc.ca	37	8	56686242	56686242	+	Missense_Mutation	SNP	G	G	A	rs140849025	alternate_allele	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	56686242	G	A	56686242	3	1	728	1	0	0	0	0	1	0	0	0	15849	1377	48	2	67	2	TGS1	8	56686242	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		56686242	89677780	34	46420											
PRDM14	63978	broad.mit.edu	37	8	70981965	70981965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	70981965	G	T	70981965	3	4	728	1	0	0	0	0	1	0	0	0	12465	1203	42	4	1612	4	PRDM14	8	70981965	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	14295723	70981965	75382057	35	46421											
STOML2	30968	broad.mit.edu	37	9	35101777	35101777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	35101777	G	A	35101777	3	1	728	1	0	0	0	0	1	0	0	0	15326	1203	42	2	720	2	STOML2	9	35101777	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		35101777	106111654	36	46422											
CREB3	10488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35736272	35736272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	35736272	T	C	35736272	3	2	728	1	0	0	0	0	1	0	0	0	3857	1551	54	3	775	3	CREB3	9	35736272	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	634495	35736272	105477159	37	46423											
MAP3K8	1326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	30748425	30748425	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	30748425	T	G	30748425	3	3	728	1	0	0	0	0	1	0	0	0	9263	1493	52	5	1290	5	MAP3K8	10	30748425	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		30748425	104786322	38	46424											
DNHD1	144132	hgsc.bcm.edu	37	11	6592937	6592937	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	6592937	G	T	6592937	2	4	728	1	0	0	0	0	0	0	0	1	4670	1103	39	4		4	DNHD1	11	6592937	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		6592937	128413579	39	46425											
PACS1	55690	broad.mit.edu;bcgsc.ca	37	11	66008916	66008916	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	66008916	T	A	66008916	4	1	728	1	0	0	0	0	0	1	0	0	11379	1471	51	5	2534	5	PACS1	11	66008916	Nonsense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	59415979	66008916	68997600	40	46426											
CLCF1	23529	broad.mit.edu;bcgsc.ca	37	11	67135057	67135057	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	67135057	G	T	67135057	2	4	728	1	0	0	0	0	0	0	0	1	3463	929	33	4		4	CLCF1	11	67135057	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	1126141	67135057	67871459	41	46427											
DSCAML1	57453	broad.mit.edu	37	11	117389379	117389380	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	117389380	-	G	117389379	7	5	728	1	0	1	1	0	0	0	0	0	4771	1696	59	0	4957	0	DSCAML1	11	117389379	Frame_Shift_Ins	INS	-	TCGA-KV-A6GE-01A-11D-A31X-10	50254322	117389379	17617137	42	46428											
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7528456	7528456	+	Silent	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	7528456	T	A	7528456	2	1	728	1	0	0	0	0	0	0	0	1	2970	1396	49	5		5	CD163L1	12	7528456	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		7528456	126323439	43	46429											
TAS2R30	259293	bcgsc.ca	37	12	11285978	11285978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	11285978	A	G	11285978	3	3	728	1	0	0	0	0	1	0	0	0	15585	101	4	3	97	3	TAS2R30	12	11285978	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	3757522	11285978	122565917	44	46430											
ABCC9	10060	ucsc.edu;bcgsc.ca	37	12	22089587	22089587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	22089587	T	C	22089587	3	2	728	1	0	0	0	0	1	0	0	0	59	1754	61	3	4921	3	ABCC9	12	22089587	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	10803609	22089587	111762308	45	46431											
DDX11	1663	bcgsc.ca	37	12	31237539	31237539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	31237539	A	G	31237539	3	3	728	1	0	0	0	0	1	0	0	0	4345	188	7	3	426	3	DDX11	12	31237539	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	9147952	31237539	102614356	46	46432											
KRT5	3852	broad.mit.edu	37	12	52913574	52913574	+	Silent	SNP	G	G	T	rs200658792	alternate_allele	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	52913574	G	T	52913574	2	4	728	1	0	0	0	0	0	0	0	1	8486	1074	38	4		4	KRT5	12	52913574	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	21676035	52913574	80938321	47	46433											
METAP2	10988	broad.mit.edu	37	12	95867964	95867964	+	Silent	SNP	T	T	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	95867964	T	G	95867964	2	3	728	1	0	0	0	0	0	0	0	1	9494	1683	59	5		5	METAP2	12	95867964	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	42954390	95867964	37983931	48	46434											
VSIG10	54621	hgsc.bcm.edu	37	12	118506351	118506351	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	118506351	C	T	118506351	2	4	728	1	0	0	0	0	0	0	0	1	17235	680	24	2		2	VSIG10	12	118506351	Silent	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	22638387	118506351	15345544	49	46435											
PARP4	143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25021252	25021252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	25021252	G	C	25021252	3	2	728	1	0	0	0	0	1	0	0	0	11470	1174	41	4	2023	4	PARP4	13	25021252	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		25021252	90148626	50	46436											
PRMT5	10419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23397402	23397402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	23397402	A	G	23397402	3	3	728	1	0	0	0	0	1	0	0	0	12549	159	6	3	1725	3	PRMT5	14	23397402	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10		23397402	83952138	51	46437											
DIO2	1734	broad.mit.edu	37	14	80669247	80669247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	80669247	A	T	80669247	3	4	728	1	0	0	0	0	1	0	0	0	4527	304	11	5	218	5	DIO2	14	80669247	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	57271845	80669247	26680293	52	46438											
BAHD1	22893	broad.mit.edu;bcgsc.ca	37	15	40751319	40751319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	40751319	G	A	40751319	3	1	728	1	0	0	0	0	1	0	0	0	1297	1116	39	1	658	1	BAHD1	15	40751319	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		40751319	61780073	53	46439											
TP53BP1	7158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43749148	43749148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	43749148	G	A	43749148	3	1	728	1	0	0	0	0	1	0	0	0	16395	1145	40	1	4343	1	TP53BP1	15	43749148	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	2997829	43749148	58782244	54	46440											
VPS13C	54832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62211580	62211580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	62211580	G	A	62211580	3	1	728	1	0	0	0	0	1	0	0	0	17203	1144	40	1	3855	1	VPS13C	15	62211580	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	18462432	62211580	40319812	55	46441											
VPS13C	54832	broad.mit.edu	37	15	62219326	62219326	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	62219326	A	G	62219326	2	3	728	1	0	0	0	0	0	0	0	1	17203	59	3	3		3	VPS13C	15	62219326	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	7746	62219326	40312066	56	46442											
PARP6	56965	broad.mit.edu	37	15	72552951	72552951	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	72552951	G	T	72552951	2	4	728	1	0	0	0	0	0	0	0	1	11471	1277	45	4		4	PARP6	15	72552951	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	10333625	72552951	29978441	57	46443											
NPTN	27020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73884465	73884465	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	73884465	G	A	73884465	2	1	728	1	0	0	0	0	0	0	0	1	10608	1277	45	2		2	NPTN	15	73884465	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	1331514	73884465	28646927	58	46444											
PRSS27	83886	broad.mit.edu	37	16	2762757	2762757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	2762757	A	C	2762757	3	2	728	1	0	0	0	0	1	0	0	0	12631	159	6	5	139	5	PRSS27	16	2762757	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10		2762757	87591996	59	46445											
ELMO3	79767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67236173	67236173	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	67236173	G	C	67236173	3	2	728	1	0	0	0	0	1	0	0	0	5069	1145	40	4	1456	4	ELMO3	16	67236173	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	64473416	67236173	23118580	60	46446											
PRMT7	54496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	68386313	68386313	+	Splice_Site	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	68386313	G	A	68386313	5	1	728	1	0	0	0	0	0	0	1	0	12551	1275	44	2	1626	2	PRMT7	16	68386313	Splice_Site	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	1150140	68386313	21968440	61	46447											
DHX38	9785	bcgsc.ca	37	16	72132887	72132887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	72132887	G	A	72132887	3	1	728	1	0	0	0	0	1	0	0	0	4513	1059	37	1	844	1	DHX38	16	72132887	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	3746574	72132887	18221866	62	46448											
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10369879	10369879	+	Missense_Mutation	SNP	C	C	T	rs148833814		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	10369879	C	T	10369879	3	4	728	1	0	0	0	0	1	0	0	0	10044	797	28	2	5787	2	MYH4	17	10369879	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10		10369879	70825331	63	46449											
BLMH	642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28614937	28614937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	28614937	G	A	28614937	3	1	728	1	0	0	0	0	1	0	0	0	1446	971	34	2	1053	2	BLMH	17	28614937	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	18245058	28614937	52580273	64	46450											
CACNB1	782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37343149	37343149	+	Missense_Mutation	SNP	C	C	G	rs201083692	alternate_allele	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	37343149	C	G	37343149	3	3	728	1	0	0	0	0	1	0	0	0	2554	507	18	4	1652	4	CACNB1	17	37343149	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	8728212	37343149	43852061	65	46451											
SLC25A39	51629	broad.mit.edu;bcgsc.ca	37	17	42399919	42399919	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	42399919	C	T	42399919	2	4	728	1	0	0	0	0	0	0	0	1	14516	724	25	2		2	SLC25A39	17	42399919	Silent	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	5056770	42399919	38795291	66	46452											
NACA2	342538	ucsc.edu	37	17	59668318	59668318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	59668318	C	T	59668318	3	4	728	1	0	0	0	0	1	0	0	0	10141	681	24	2	427	2	NACA2	17	59668318	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	17268399	59668318	21526892	67	46453											
AFG3L2	10939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12367020	12367020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	G	12367020	A	G	12367020	3	3	728	1	0	0	0	0	1	0	0	0	360	333	12	3	1949	3	AFG3L2	18	12367020	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10		12367020	65710228	68	46454											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9088827	9088827	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	9088827	T	C	9088827	2	2	728	1	0	0	0	0	0	0	0	1	9980	1741	61	3		3	MUC16	19	9088827	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		9088827	50040156	69	46455											
NKPD1	284353	broad.mit.edu	37	19	45655438	45655438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	45655438	G	T	45655438	3	4	728	1	0	0	0	0	1	0	0	0	10453	1087	38	4	245	4	NKPD1	19	45655438	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	36566611	45655438	13473545	70	46456											
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53740610	53740610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	53740610	T	C	53740610	3	2	728	1	0	0	0	0	1	0	0	0	18096	1841	64	3	388	3	ZNF677	19	53740610	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	8085172	53740610	5388373	71	46457											
LILRA5	353514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54822787	54822787	+	Silent	SNP	A	A	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	54822787	A	C	54822787	2	2	728	1	0	0	0	0	0	0	0	1	8795	175	7	5		5	LILRA5	19	54822787	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	1082177	54822787	4306196	72	46458											
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	58385790	G	T	58385790	3	4	728	1	0	0	0	0	1	0	0	0	18188	1000	35	4	1603	4	ZNF814	19	58385790	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	3563003	58385790	743193	73	46459	686	3									
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	58385793	C	T	58385793	3	4	728	1	0	0	0	0	1	0	0	0	18188	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	3	58385793	743190	74	46460	686	3									
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	TT	58385799	CC	TT	58385798	3	4	728	1	0	0	0	0	1	0	0	0	18188	842	30	2	1611	2	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-KV-A6GE-01A-11D-A31X-10	5	58385798	743185	75	46461	686	3									
ZNF814	730051	bcgsc.ca	37	19	58385873	58385873	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	C	58385873	T	C	58385873	2	2	728	1	0	0	0	0	0	0	0	1	18188	1722	60	3		3	ZNF814	19	58385873	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	75	58385873	743110	76	46462											
AHCY	191	broad.mit.edu	37	20	32873357	32873357	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	32873357	G	T	32873357	2	4	728	1	0	0	0	0	0	0	0	1	409	1190	42	4		4	AHCY	20	32873357	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		32873357	30152163	77	46463											
TRAPPC10	7109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45502876	45502876	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	A	45502876	G	A	45502876	4	1	728	1	0	0	0	0	0	1	0	0	16469	1357	47	2	1985	2	TRAPPC10	21	45502876	Nonsense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		45502876	2627019	78	46464											
CELSR1	9620	broad.mit.edu	37	22	46763676	46763676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	T	46763676	G	T	46763676	3	4	728	1	0	0	0	0	1	0	0	0	3223	1116	39	4	1047	4	CELSR1	22	46763676	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		46763676	4540890	79	46465											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19482811	19482811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	19482811	G	A	19482811	3	1	729	1	0	0	0	0	1	0	0	0	16916	1000	35	2	9785	2	UBR4	1	19482811	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		19482811	229767810	1	46466											
ADPRHL2	54936	broad.mit.edu	37	1	36557328	36557328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	36557328	C	T	36557328	3	4	729	1	0	0	0	0	1	0	0	0	333	643	23	1	428	1	ADPRHL2	1	36557328	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	17074517	36557328	212693293	2	46467											
STK40	83931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36820910	36820910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	36820910	A	T	36820910	3	4	729	1	0	0	0	0	1	0	0	0	15319	304	11	5	868	5	STK40	1	36820910	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	263582	36820910	212429711	3	46468											
KIAA0754	643314	broad.mit.edu	37	1	39880152	39880152	+	Silent	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	39880152	A	T	39880152	2	4	729	1	0	0	0	0	0	0	0	1	8199	349	13	5		5	KIAA0754	1	39880152	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	3059242	39880152	209370469	4	46469											
HSPB11	51668	broad.mit.edu;bcgsc.ca	37	1	54395757	54395757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	54395757	G	A	54395757	3	1	729	1	0	0	0	0	1	0	0	0	7426	1348	47	2	290	2	HSPB11	1	54395757	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	14515605	54395757	194854864	5	46470											
DNAJC6	9829	broad.mit.edu	37	1	65775557	65775557	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	65775557	C	T	65775557	2	4	729	1	0	0	0	0	0	0	0	1	4655	667	23	1		1	DNAJC6	1	65775557	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	11379800	65775557	183475064	6	46471											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109807154	109807154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	109807154	G	A	109807154	3	1	729	1	0	0	0	0	1	0	0	0	3224	1000	35	2	5410	2	CELSR2	1	109807154	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	44031597	109807154	139443467	7	46472											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150531493	150531493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	150531493	G	T	150531493	3	4	729	1	0	0	0	0	1	0	0	0	277	1029	36	4	2744	4	ADAMTSL4	1	150531493	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	40724339	150531493	98719128	8	46473											
TCHHL1	126637	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152059687	152059687	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	152059687	C	T	152059687	2	4	729	1	0	0	0	0	0	0	0	1	15713	581	21	2		2	TCHHL1	1	152059687	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	1528194	152059687	97190934	9	46474											
KCNN3	3782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154744543	154744543	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	154744543	C	T	154744543	2	4	729	1	0	0	0	0	0	0	0	1	8087	912	32	2		2	KCNN3	1	154744543	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	2684856	154744543	94506078	10	46475											
ELK4	2005	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	205588957	205588957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	205588957	C	G	205588957	3	3	729	1	0	0	0	0	1	0	0	0	5063	837	29	4	228	4	ELK4	1	205588957	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	50844414	205588957	43661664	11	46476											
OR13G1	441933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247836182	247836183	+	Missense_Mutation	DNP	CG	CG	AA	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	AA	247836183	CG	AA	247836182	3	1	729	1	0	0	0	0	1	0	0	0	10949	755	27	4	765	4	OR13G1	1	247836182	Missense_Mutation	DNP	CG	TCGA-MH-A55W-01A-11D-A26P-10	42247225	247836182	1414439	12	46477											
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17962535	17962535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	17962535	C	G	17962535	3	3	729	1	0	0	0	0	1	0	0	0	6342	827	29	4	2106	4	GEN1	2	17962535	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		17962535	225236838	13	46478											
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24469667	24469667	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	24469667	A	G	24469667	2	3	729	1	0	0	0	0	0	0	0	1	7934	202	7	3		3	ITSN2	2	24469667	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	6507132	24469667	218729706	14	46479											
ADCY3	109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25051028	25051029	+	Missense_Mutation	DNP	GA	GA	AC	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	AC	25051029	GA	AC	25051028	3	1	729	1	0	0	0	0	1	0	0	0	295	1277	45	2	1295	2	ADCY3	2	25051028	Missense_Mutation	DNP	GA	TCGA-MH-A55W-01A-11D-A26P-10	581361	25051028	218148345	15	46480											
SLC5A6	8884	hgsc.bcm.edu;bcgsc.ca	37	2	27428892	27428892	+	Splice_Site	DEL	A	A	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	27428892	A	-	27428892	8	5	729	1	0	1	0	1	0	0	1	0	14682	405	14	0	1374	0	SLC5A6	2	27428892	Splice_Site	DEL	A	TCGA-MH-A55W-01A-11D-A26P-10	2377864	27428892	215770481	16	46481											
NRBP1	29959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27660178	27660178	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	27660178	A	T	27660178	3	4	729	1	0	0	0	0	1	0	0	0	10649	188	7	5	888	5	NRBP1	2	27660178	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	231286	27660178	215539195	17	46482											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	109380179	109380179	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	109380179	A	-	109380179	7	5	729	1	0	1	0	1	0	0	0	0	13041	362	13	0	3262	0	RANBP2	2	109380179	Frame_Shift_Del	DEL	A	TCGA-MH-A55W-01A-11D-A26P-10	81720001	109380179	133819194	18	46483											
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	110922202	110922202	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	110922202	A	T	110922202	3	4	729	1	0	0	0	0	1	0	0	0	10586	446	16	5	1419	5	NPHP1	2	110922202	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	1542023	110922202	132277171	19	46484											
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	122161975	122161975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	122161975	G	C	122161975	3	2	729	1	0	0	0	0	1	0	0	0	3456	1029	36	4	1967	4	CLASP1	2	122161975	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	11239773	122161975	121037398	20	46485											
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	241725900	241725900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	241725900	C	T	241725900	3	4	729	1	0	0	0	0	1	0	0	0	8290	536	19	1	4780	1	KIF1A	2	241725900	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	119563925	241725900	1473473	21	46486											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46009857	46009857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	46009857	C	A	46009857	3	1	729	1	0	0	0	0	1	0	0	0	6132	796	28	4	3511	4	FYCO1	3	46009857	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		46009857	152012573	22	46487											
RBM5	10181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50155814	50155814	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	50155814	T	A	50155814	4	1	729	1	0	0	0	0	0	1	0	0	13156	1471	51	5	2467	5	RBM5	3	50155814	Nonsense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	4145957	50155814	147866616	23	46488											
KIAA1524	57650	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108288411	108288411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	108288411	C	T	108288411	3	4	729	1	0	0	0	0	1	0	0	0	8246	768	27	1	1831	1	KIAA1524	3	108288411	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	58132597	108288411	89734019	24	46489											
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113120585	113120585	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	113120585	A	C	113120585	3	2	729	1	0	0	0	0	1	0	0	0	17316	463	16	5	4511	5	WDR52	3	113120585	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	4832174	113120585	84901845	25	46490											
KALRN	8997	broad.mit.edu	37	3	124209630	124209630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	124209630	C	T	124209630	3	4	729	1	0	0	0	0	1	0	0	0	7982	759	27	1	4598	1	KALRN	3	124209630	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	11089045	124209630	73812800	26	46491											
IFT122	55764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	129214436	129214436	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	129214436	T	-	129214436	7	5	729	1	0	1	0	1	0	0	0	0	7562	1725	60	0	2421	0	IFT122	3	129214436	Frame_Shift_Del	DEL	T	TCGA-MH-A55W-01A-11D-A26P-10	5004806	129214436	68807994	27	46492											
CCRL1	51554	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132319273	132319273	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	132319273	A	C	132319273	3	2	729	1	0	0	0	0	1	0	0	0	2951	449	16	5	34	5	CCRL1	3	132319273	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	3104837	132319273	65703157	28	46493											
MYNN	55892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169496621	169496621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	169496621	G	A	169496621	3	1	729	1	0	0	0	0	1	0	0	0	10068	1319	46	2	338	2	MYNN	3	169496621	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	37177348	169496621	28525809	29	46494											
ATP11B	23200	broad.mit.edu	37	3	182607235	182607235	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	182607235	T	-	182607235	7	5	729	1	0	1	0	1	0	0	0	0	1120	1493	52	0	2979	0	ATP11B	3	182607235	Frame_Shift_Del	DEL	T	TCGA-MH-A55W-01A-11D-A26P-10	13110614	182607235	15415195	30	46495											
KNG1	3827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186435425	186435425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	186435425	G	T	186435425	3	4	729	1	0	0	0	0	1	0	0	0	8434	1174	41	4	96	4	KNG1	3	186435425	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	3828190	186435425	11587005	31	46496											
CPZ	8532	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8607801	8607801	+	Silent	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	8607801	G	C	8607801	2	2	729	1	0	0	0	0	0	0	0	1	3841	1364	48	4		4	CPZ	4	8607801	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		8607801	182546475	32	46497											
TBC1D19	55296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	26585819	26585819	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	26585819	T	C	26585819	2	2	729	1	0	0	0	0	0	0	0	1	15619	1722	60	3		3	TBC1D19	4	26585819	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	17978018	26585819	164568457	33	46498											
N4BP2	55728	ucsc.edu	37	4	40122111	40122111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	40122111	G	A	40122111	3	1	729	1	0	0	0	0	1	0	0	0	10117	1290	45	2	2406	2	N4BP2	4	40122111	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	13536292	40122111	151032165	34	46499											
GRSF1	2926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71702003	71702003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	71702003	A	G	71702003	3	3	729	1	0	0	0	0	1	0	0	0	6816	72	3	3	1088	3	GRSF1	4	71702003	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	31579892	71702003	119452273	35	46500											
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	141600812	141600812	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	141600812	G	A	141600812	2	1	729	1	0	0	0	0	0	0	0	1	15639	1310	46	2		2	TBC1D9	4	141600812	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	69898809	141600812	49553464	36	46501											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38418272	38418272	+	Silent	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	38418272	C	A	38418272	2	1	729	1	0	0	0	0	0	0	0	1	4968	784	28	4		4	EGFLAM	5	38418272	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		38418272	142496988	37	46502											
DAB2	1601	broad.mit.edu	37	5	39383200	39383200	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	39383200	A	G	39383200	2	3	729	1	0	0	0	0	0	0	0	1	4220	243	9	3		3	DAB2	5	39383200	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	964928	39383200	141532060	38	46503											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89979468	89979468	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	89979468	T	C	89979468	2	2	729	1	0	0	0	0	0	0	0	1	6728	1461	51	3		3	GPR98	5	89979468	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	50596268	89979468	90935792	39	46504											
STK10	6793	hgsc.bcm.edu	37	5	171471934	171471934	+	Silent	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	171471934	T	G	171471934	2	3	729	1	0	0	0	0	0	0	0	1	15298	1799	63	5		5	STK10	5	171471934	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	81492466	171471934	9443326	40	46505											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176709581	176709584	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	176709584	AAGT	-	176709581	7	5	729	1	0	1	0	1	0	0	0	0	10676	28	1	0	6078	0	NSD1	5	176709581	Frame_Shift_Del	DEL	AAGT	TCGA-MH-A55W-01A-11D-A26P-10	5237647	176709581	4205679	41	46506											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32038155	32038155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	32038155	C	T	32038155	3	4	729	1	0	0	0	0	1	0	0	0	16358	768	27	1	9810	1	TNXB	6	32038155	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		32038155	139076912	42	46507											
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	39159405	39159412	+	Frame_Shift_Del	DEL	TTGTGGAC	TTGTGGAC	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTGTGGAC	TTGTGGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	39159412	TTGTGGAC	-	39159405	7	5	729	1	0	1	0	1	0	0	0	0	8076	1841	64	0	742	0	KCNK5	6	39159405	Frame_Shift_Del	DEL	TTGTGGAC	TCGA-MH-A55W-01A-11D-A26P-10	7121250	39159405	131955662	43	46508											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51768400	51768400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	51768400	T	G	51768400	3	3	729	1	0	0	0	0	1	0	0	0	11978	1406	49	5	5372	5	PKHD1	6	51768400	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	12608995	51768400	119346667	44	46509											
GCM1	8521	hgsc.bcm.edu;bcgsc.ca	37	6	52993368	52993369	+	In_Frame_Ins	INS	-	-	AAA	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	AAA	52993369	-	AAA	52993368	7	5	729	1	0	1	1	0	0	0	0	0	6304	1406	49	0	367	0	GCM1	6	52993368	In_Frame_Ins	INS	-	TCGA-MH-A55W-01A-11D-A26P-10	1224968	52993368	118121699	45	46510											
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90459294	90459294	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	90459294	G	A	90459294	4	1	729	1	0	0	0	0	0	1	0	0	9422	1357	47	2	13519	2	MDN1	6	90459294	Nonsense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	37465926	90459294	80655773	46	46511											
AKAP12	9590	hgsc.bcm.edu;bcgsc.ca	37	6	151671659	151671659	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	151671659	C	-	151671659	7	5	729	1	0	1	0	1	0	0	0	0	448	506	18	0	2172	0	AKAP12	6	151671659	Frame_Shift_Del	DEL	C	TCGA-MH-A55W-01A-11D-A26P-10	61212365	151671659	19443408	47	46512											
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	151686673	151686676	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	151686676	TTTC	-	151686673	7	5	729	1	0	1	0	1	0	0	0	0	17540	1725	60	0	20	0	ZBTB2	6	151686673	Frame_Shift_Del	DEL	TTTC	TCGA-MH-A55W-01A-11D-A26P-10	15014	151686673	19428394	48	46513											
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	33380559	33380559	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	33380559	G	C	33380559	3	2	729	1	0	0	0	0	1	0	0	0	1342	1261	44	4	1287	4	BBS9	7	33380559	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		33380559	125758104	49	46514											
GBAS	2631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	56046042	56046042	+	Splice_Site	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	56046042	G	C	56046042	5	2	729	1	0	0	0	0	0	0	1	0	6276	1043	36	4	242	4	GBAS	7	56046042	Splice_Site	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	22665483	56046042	103092621	50	46515											
TAF6	6878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99711723	99711723	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	99711723	T	-	99711723	7	5	729	1	0	1	0	1	0	0	0	0	15542	1580	55	0	1979	0	TAF6	7	99711723	Frame_Shift_Del	DEL	T	TCGA-MH-A55W-01A-11D-A26P-10	43665681	99711723	59426940	51	46516											
SLC13A4	26266	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	135370357	135370357	+	Silent	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	135370357	C	A	135370357	2	1	729	1	0	0	0	0	0	0	0	1	14407	697	25	4		4	SLC13A4	7	135370357	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	35658634	135370357	23768306	52	46517											
MLL3	58508	broad.mit.edu	37	7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	rs4024337		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	151921114	A	T	151921114	4	4	729	1	0	0	0	0	0	1	0	0	9629	389	14	5	11586	5	MLL3	7	151921114	Nonsense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	16550757	151921114	7217549	53	46518											
ANK1	286	broad.mit.edu;bcgsc.ca	37	8	41582026	41582026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	41582026	T	G	41582026	3	3	729	1	0	0	0	0	1	0	0	0	620	1725	60	5	5484	5	ANK1	8	41582026	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10		41582026	104781996	54	46519											
TRPM6	140803	broad.mit.edu	37	9	77448994	77448994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	77448994	G	A	77448994	3	1	729	1	0	0	0	0	1	0	0	0	16602	1290	45	2	5615	2	TRPM6	9	77448994	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		77448994	63764437	55	46520											
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131021446	131021446	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	131021446	C	T	131021446	2	4	729	1	0	0	0	0	0	0	0	1	6559	695	24	2		2	GOLGA2	9	131021446	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	53572452	131021446	10191985	56	46521											
C9orf78	51759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132593305	132593305	+	Silent	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	132593305	G	T	132593305	2	4	729	1	0	0	0	0	0	0	0	1	2498	1048	37	4		4	C9orf78	9	132593305	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	1571859	132593305	8620126	57	46522											
PRKCQ	5588	broad.mit.edu	37	10	6557067	6557067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	6557067	T	G	6557067	3	3	729	1	0	0	0	0	1	0	0	0	12525	1812	63	5	2157	5	PRKCQ	10	6557067	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10		6557067	128977680	58	46523											
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55600213	55600213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	55600213	C	A	55600213	3	1	729	1	0	0	0	0	1	0	0	0	11518	507	18	4	3656	4	PCDH15	10	55600213	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	49043146	55600213	79934534	59	46524											
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	83635808	83635808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	83635808	T	C	83635808	3	2	729	1	0	0	0	0	1	0	0	0	10656	1783	62	3	714	3	NRG3	10	83635808	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	28035595	83635808	51898939	60	46525											
KIF11	3832	bcgsc.ca	37	10	94373230	94373230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	94373230	G	A	94373230	3	1	729	1	0	0	0	0	1	0	0	0	8279	1233	43	2	916	2	KIF11	10	94373230	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	10737422	94373230	41161517	61	46526											
CYP2C8	1558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96818110	96818110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	96818110	G	C	96818110	3	2	729	1	0	0	0	0	1	0	0	0	4169	1165	41	4	691	4	CYP2C8	10	96818110	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	2444880	96818110	38716637	62	46527											
SORBS1	10580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97096528	97096528	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	97096528	T	G	97096528	3	3	729	1	0	0	0	0	1	0	0	0	14940	1841	64	5	569	5	SORBS1	10	97096528	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	278418	97096528	38438219	63	46528											
GPR123	84435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	134912186	134912187	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	134912187	TT	-	134912186	7	5	729	1	0	1	0	1	0	0	0	0	6644	1490	52	0	184	0	GPR123	10	134912186	Frame_Shift_Del	DEL	TT	TCGA-MH-A55W-01A-11D-A26P-10	37815658	134912186	622561	64	46529											
MARK2	2011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63671476	63671476	+	Silent	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	63671476	C	G	63671476	2	3	729	1	0	0	0	0	0	0	0	1	9320	610	22	4		4	MARK2	11	63671476	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		63671476	71335040	65	46530											
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65107956	65107956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	65107956	C	G	65107956	3	3	729	1	0	0	0	0	1	0	0	0	4719	479	17	4	139	4	DPF2	11	65107956	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	1436480	65107956	69898560	66	46531											
ADRBK1	156	bcgsc.ca	37	11	67048958	67048958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	67048958	C	T	67048958	3	4	729	1	0	0	0	0	1	0	0	0	343	768	27	1	710	1	ADRBK1	11	67048958	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	1941002	67048958	67957558	67	46532											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92599961	92599961	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	92599961	T	A	92599961	3	1	729	1	0	0	0	0	1	0	0	0	5698	1606	56	5	11795	5	FAT3	11	92599961	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	25551003	92599961	42406555	68	46533											
ALKBH8	91801	ucsc.edu	37	11	107423870	107423870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	107423870	T	C	107423870	3	2	729	1	0	0	0	0	1	0	0	0	533	1783	62	3	1467	3	ALKBH8	11	107423870	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	14823909	107423870	27582646	69	46534											
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118984691	118984704	+	Frame_Shift_Del	DEL	TTTCCAAGGTAACA	TTTCCAAGGTAACA	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTTCCAAGGTAACA	TTTCCAAGGTAACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	118984704	TTTCCAAGGTAACA	-	118984691	7	5	729	1	0	1	0	1	0	0	0	0	2155	1725	60	0	1665	0	C2CD2L	11	118984691	Frame_Shift_Del	DEL	TTTCCAAGGTAACA	TCGA-MH-A55W-01A-11D-A26P-10	11560821	118984691	16021825	70	46535											
CCDC15	80071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124847425	124847425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	124847425	G	C	124847425	3	2	729	1	0	0	0	0	1	0	0	0	2786	1001	35	4	700	4	CCDC15	11	124847425	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	5862734	124847425	10159091	71	46536											
STT3A	3703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	125478106	125478106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	125478106	T	G	125478106	3	3	729	1	0	0	0	0	1	0	0	0	15345	1493	52	5	913	5	STT3A	11	125478106	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	630681	125478106	9528410	72	46537											
IQSEC3	440073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	275007	275007	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	275007	G	A	275007	2	1	729	1	0	0	0	0	0	0	0	1	7826	1277	45	2		2	IQSEC3	12	275007	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		275007	133576888	73	46538											
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7527336	7527336	+	Silent	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	7527336	G	T	7527336	2	4	729	1	0	0	0	0	0	0	0	1	2970	1190	42	4		4	CD163L1	12	7527336	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	7252329	7527336	126324559	74	46539											
MTERFD3	80298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	107371368	107371368	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	107371368	A	C	107371368	3	2	729	1	0	0	0	0	1	0	0	0	9928	359	13	5	36	5	MTERFD3	12	107371368	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	99844032	107371368	26480527	75	46540											
DIABLO	56616	bcgsc.ca	37	12	122710521	122710521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	122710521	G	A	122710521	3	1	729	1	0	0	0	0	1	0	0	0	4519	1294	45	2	702	2	DIABLO	12	122710521	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	15339153	122710521	11141374	76	46541											
MMP17	4326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132334421	132334421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	132334421	C	T	132334421	3	4	729	1	0	0	0	0	1	0	0	0	9663	623	22	2	1313	2	MMP17	12	132334421	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	9623900	132334421	1517474	77	46542											
SUCLA2	8803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48571053	48571053	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	48571053	C	G	48571053	3	3	729	1	0	0	0	0	1	0	0	0	15375	922	32	4	1235	4	SUCLA2	13	48571053	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		48571053	66598825	78	46543											
STK24	8428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99127511	99127511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	99127511	G	T	99127511	3	4	729	1	0	0	0	0	1	0	0	0	15305	1368	48	4	895	4	STK24	13	99127511	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	50556458	99127511	16042367	79	46544											
CIDEB	27141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24775587	24775587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	24775587	G	C	24775587	3	2	729	1	0	0	0	0	1	0	0	0	3428	1000	35	4	342	4	CIDEB	14	24775587	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		24775587	82573953	80	46545											
ACTR10	55860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	58680398	58680398	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	58680398	G	C	58680398	3	2	729	1	0	0	0	0	1	0	0	0	208	1174	41	4	522	4	ACTR10	14	58680398	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	33904811	58680398	48669142	81	46546											
SPTLC2	9517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	78036838	78036838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	78036838	C	A	78036838	3	1	729	1	0	0	0	0	1	0	0	0	15136	796	28	4	1075	4	SPTLC2	14	78036838	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	19356440	78036838	29312702	82	46547											
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	91681816	91681816	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	91681816	C	T	91681816	2	4	729	1	0	0	0	0	0	0	0	1	1757	477	17	2		2	C14orf159	14	91681816	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	13644978	91681816	15667724	83	46548											
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	103969341	103969341	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	103969341	G	-	103969341	7	5	729	1	0	1	0	1	0	0	0	0	9321	1087	38	0	2109	0	MARK3	14	103969341	Frame_Shift_Del	DEL	G	TCGA-MH-A55W-01A-11D-A26P-10	12287525	103969341	3380199	84	46549											
AHNAK2	113146	broad.mit.edu	37	14	105406110	105406110	+	Silent	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	105406110	A	C	105406110	2	2	729	1	0	0	0	0	0	0	0	1	415	146	6	5		5	AHNAK2	14	105406110	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	1436769	105406110	1943430	85	46550											
MGA	23269	bcgsc.ca	37	15	42057124	42057124	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	42057124	C	T	42057124	2	4	729	1	0	0	0	0	0	0	0	1	9547	506	18	2		2	MGA	15	42057124	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		42057124	60474268	86	46551											
ELL3	80237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44066413	44066413	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	44066413	A	C	44066413	3	2	729	1	0	0	0	0	1	0	0	0	5066	358	13	5	200	5	ELL3	15	44066413	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	2009289	44066413	58464979	87	46552											
FAM63B	54629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	59139573	59139573	+	Silent	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	59139573	A	T	59139573	2	4	729	1	0	0	0	0	0	0	0	1	5604	407	15	5		5	FAM63B	15	59139573	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	15073160	59139573	43391819	88	46553											
DAPK2	23604	broad.mit.edu;ucsc.edu	37	15	64200745	64200745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	64200745	G	A	64200745	3	1	729	1	0	0	0	0	1	0	0	0	4238	1232	43	2	29	2	DAPK2	15	64200745	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	5061172	64200745	38330647	89	46554											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89400337	89400337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	89400337	T	A	89400337	3	1	729	1	0	0	0	0	1	0	0	0	117	1693	59	5	4563	5	ACAN	15	89400337	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	25199592	89400337	13131055	90	46555											
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24581079	24581079	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	24581079	A	T	24581079	3	4	729	1	0	0	0	0	1	0	0	0	13116	101	4	5	3188	5	RBBP6	16	24581079	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10		24581079	65773674	91	46556											
CHST6	4166	bcgsc.ca	37	16	75513372	75513372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	75513372	C	T	75513372	3	4	729	1	0	0	0	0	1	0	0	0	3410	884	31	1	836	1	CHST6	16	75513372	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	50932293	75513372	14841381	92	46557											
ARHGEF15	22899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8215790	8215790	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	8215790	T	G	8215790	3	3	729	1	0	0	0	0	1	0	0	0	898	1551	54	5	435	5	ARHGEF15	17	8215790	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10		8215790	72979420	93	46558											
FBXO47	494188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37099134	37099134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	37099134	A	G	37099134	3	3	729	1	0	0	0	0	1	0	0	0	5763	304	11	3	390	3	FBXO47	17	37099134	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	28883344	37099134	44096076	94	46559											
COPZ2	51226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46103806	46103806	+	Silent	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	46103806	C	G	46103806	2	3	729	1	0	0	0	0	0	0	0	1	3744	523	19	4		4	COPZ2	17	46103806	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	9004672	46103806	35091404	95	46560											
AMZ2	51321	hgsc.bcm.edu;bcgsc.ca	37	17	66246341	66246341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	66246341	C	T	66246341	3	4	729	1	0	0	0	0	1	0	0	0	597	527	19	1	15	1	AMZ2	17	66246341	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	20142535	66246341	14948869	96	46561											
C17orf70	80233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79518169	79518169	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	79518169	A	G	79518169	2	3	729	1	0	0	0	0	0	0	0	1	1879	175	7	3		3	C17orf70	17	79518169	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	13271828	79518169	1677041	97	46562											
DLGAP1	9229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3508641	3508641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	3508641	G	A	3508641	3	1	729	1	0	0	0	0	1	0	0	0	4561	1261	44	2	447	2	DLGAP1	18	3508641	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		3508641	74568607	98	46563											
RALBP1	10928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9524704	9524704	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	9524704	C	G	9524704	3	3	729	1	0	0	0	0	1	0	0	0	13025	623	22	4	1180	4	RALBP1	18	9524704	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	6016063	9524704	68552544	99	46564											
DSG4	147409	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28966661	28966661	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	28966661	T	A	28966661	3	1	729	1	0	0	0	0	1	0	0	0	4781	1841	64	5	105	5	DSG4	18	28966661	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	19441957	28966661	49110587	100	46565											
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29116286	29116286	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	29116286	T	C	29116286	2	2	729	1	0	0	0	0	0	0	0	1	4779	1741	61	3		3	DSG2	18	29116286	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	149625	29116286	48960962	101	46566											
UBXN6	80700	ucsc.edu	37	19	4453972	4453972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	4453972	A	G	4453972	3	3	729	1	0	0	0	0	1	0	0	0	16929	275	10	3	1163	3	UBXN6	19	4453972	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10		4453972	54675011	102	46567											
LRRC8E	80131	broad.mit.edu	37	19	7964010	7964010	+	Silent	SNP	T	T	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	7964010	T	G	7964010	2	3	729	1	0	0	0	0	0	0	0	1	9032	1683	59	5		5	LRRC8E	19	7964010	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	3510038	7964010	51164973	103	46568											
ZNF799	90576	ucsc.edu;bcgsc.ca	37	19	12502160	12502160	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	12502160	G	T	12502160	4	4	729	1	0	0	0	0	0	1	0	0	18178	1294	45	4	883	4	ZNF799	19	12502160	Nonsense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	4538150	12502160	46626823	104	46569											
RDH13	112724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55570627	55570627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	55570627	C	A	55570627	3	1	729	1	0	0	0	0	1	0	0	0	13205	594	21	4	937	4	RDH13	19	55570627	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	43068467	55570627	3558356	105	46570											
SLC32A1	140679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	37353586	37353607	+	Frame_Shift_Del	DEL	GGGCGCTGAAGCGCCCGTCGAG	GGGCGCTGAAGCGCCCGTCGAG	-	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	GGGCGCTGAAGCGCCCGTCGAG	GGGCGCTGAAGCGCCCGTCGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	-	37353607	GGGCGCTGAAGCGCCCGTCGAG	-	37353586	7	5	729	1	0	1	0	1	0	0	0	0	14578	991	35	0	221	0	SLC32A1	20	37353586	Frame_Shift_Del	DEL	GGGCGCTGAAGCGCCCGTCGAG	TCGA-MH-A55W-01A-11D-A26P-10		37353586	25671934	106	46571											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	46254225	46254225	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	46254225	G	A	46254225	2	1	729	1	0	0	0	0	0	0	0	1	10237	1014	35	2		2	NCOA3	20	46254225	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	8900639	46254225	16771295	107	46572											
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49509272	49509272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	49509272	A	G	49509272	3	3	729	1	0	0	0	0	1	0	0	0	323	304	11	3	1333	3	ADNP	20	49509272	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	3255047	49509272	13516248	108	46573											
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15561570	15561570	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	15561570	G	A	15561570	4	1	729	1	0	0	0	0	0	1	0	0	8832	1386	48	2	1201	2	LIPI	21	15561570	Nonsense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		15561570	32568325	109	46574											
HLCS	3141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	38309141	38309141	+	Missense_Mutation	SNP	C	C	G	rs148324626		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	38309141	C	G	38309141	3	3	729	1	0	0	0	0	1	0	0	0	7220	864	30	4	1608	4	HLCS	21	38309141	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	22747571	38309141	9820754	110	46575											
IL17RA	23765	hgsc.bcm.edu	37	22	17566096	17566096	+	Silent	SNP	C	C	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	17566096	C	A	17566096	2	1	729	1	0	0	0	0	0	0	0	1	7646	643	23	4		4	IL17RA	22	17566096	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		17566096	33738470	111	46576											
HIC2	23119	ucsc.edu	37	22	21800382	21800382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	A	21800382	G	A	21800382	3	1	729	1	0	0	0	0	1	0	0	0	7109	1175	41	2	1204	2	HIC2	22	21800382	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	4234286	21800382	29504184	112	46577											
CSNK1E	1454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38690131	38690131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	38690131	C	T	38690131	3	4	729	1	0	0	0	0	1	0	0	0	3955	652	23	1	56	1	CSNK1E	22	38690131	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	16889749	38690131	12614435	113	46578											
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	51160300	51160300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	51160300	C	G	51160300	3	3	729	1	0	0	0	0	1	0	0	0	14279	623	22	4	4173	4	SHANK3	22	51160300	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	12470169	51160300	144266	114	46579											
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	10066562	10066562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	C	10066562	A	C	10066562	3	2	729	1	0	0	0	0	1	0	0	0	17425	14	1	5	700	5	WWC3	23	10066562	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10		10066562	145203998	115	46580											
SSX5	6758	broad.mit.edu	37	X	48054486	48054486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	48054486	G	T	48054486	3	4	729	1	0	0	0	0	1	0	0	0	15220	1203	42	4	564	4	SSX5	23	48054486	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	37987924	48054486	107216074	116	46581											
RLIM	51132	broad.mit.edu	37	X	73811995	73811995	+	Silent	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	73811995	G	T	73811995	2	4	729	1	0	0	0	0	0	0	0	1	13403	1335	47	4		4	RLIM	23	73811995	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	25757509	73811995	81458565	117	46582											
XIAP	331	bcgsc.ca	37	X	123020210	123020210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	T	123020210	G	T	123020210	3	4	729	1	0	0	0	0	1	0	0	0	17440	1116	39	4	700	4	XIAP	23	123020210	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	49208215	123020210	32250350	118	46583											
PNCK	139728	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152938463	152938463	+	Splice_Site	SNP	C	C	G	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	G	152938463	C	G	152938463	5	3	729	1	0	0	0	0	0	0	1	0	12152	550	19	4	1002	4	PNCK	23	152938463	Splice_Site	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	29918253	152938463	2332097	119	46584											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19504023	19504023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	19504023	G	C	19504023	3	2	730	1	0	0	0	0	1	0	0	0	16916	1058	37	4	13334	4	UBR4	1	19504023	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		19504023	229746598	1	46585											
GJB5	2709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	35223633	35223633	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	35223633	C	T	35223633	2	4	730	1	0	0	0	0	0	0	0	1	6418	581	21	2		2	GJB5	1	35223633	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	15719610	35223633	214026988	2	46586											
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38040324	38040324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	38040324	C	G	38040324	3	3	730	1	0	0	0	0	1	0	0	0	6543	595	21	4	975	4	GNL2	1	38040324	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	2816691	38040324	211210297	3	46587											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	116941337	116941337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	116941337	A	G	116941337	3	3	730	1	0	0	0	0	1	0	0	0	1128	333	12	3	2297	3	ATP1A1	1	116941337	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	78901013	116941337	132309284	4	46588											
LCE2A	353139	hgsc.bcm.edu	37	1	152671534	152671534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	152671534	G	A	152671534	3	1	730	1	0	0	0	0	1	0	0	0	8672	1116	39	1	159	1	LCE2A	1	152671534	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	35730197	152671534	96579087	5	46589											
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158517180	158517180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	158517180	C	T	158517180	3	4	730	1	0	0	0	0	1	0	0	0	11220	768	27	1	263	1	OR6Y1	1	158517180	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	5845646	158517180	90733441	6	46590											
FAM129A	116496	ucsc.edu	37	1	184767284	184767284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	184767284	G	A	184767284	3	1	730	1	0	0	0	0	1	0	0	0	5440	1261	44	2	1199	2	FAM129A	1	184767284	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	26250104	184767284	64483337	7	46591											
TMEM206	55248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	212548558	212548558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	212548558	G	A	212548558	3	1	730	1	0	0	0	0	1	0	0	0	16143	1174	41	2	192	2	TMEM206	1	212548558	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	27781274	212548558	36702063	8	46592											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228469852	228469852	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	228469852	G	T	228469852	4	4	730	1	0	0	0	0	0	1	0	0	10819	1175	41	4	8534	4	OBSCN	1	228469852	Nonsense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	15921294	228469852	20780769	9	46593											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235884164	235884164	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	235884164	G	A	235884164	2	1	730	1	0	0	0	0	0	0	0	1	9135	1161	41	2		2	LYST	1	235884164	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	7414312	235884164	13366457	10	46594											
FAM110C	642273	hgsc.bcm.edu;broad.mit.edu	37	2	45688	45688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	45688	C	T	45688	3	4	730	1	0	0	0	0	1	0	0	0	5402	623	22	2	275	2	FAM110C	2	45688	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		45688	243153685	11	46595											
SMC6	79677	ucsc.edu	37	2	17881597	17881597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	17881597	G	A	17881597	3	1	730	1	0	0	0	0	1	0	0	0	14800	1377	48	2	1035	2	SMC6	2	17881597	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	17835909	17881597	225317776	12	46596											
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25469542	25469542	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	25469542	C	T	25469542	4	4	730	1	0	0	0	0	0	1	0	0	4678	595	21	2	1568	2	DNMT3A	2	25469542	Nonsense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	7587945	25469542	217729831	13	46597											
C2orf16	84226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27801772	27801772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	27801772	A	T	27801772	3	4	730	1	0	0	0	0	1	0	0	0	2159	246	9	5	2335	5	C2orf16	2	27801772	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	2332230	27801772	215397601	14	46598											
GEMIN6	79833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	39008788	39008788	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	39008788	C	T	39008788	2	4	730	1	0	0	0	0	0	0	0	1	6339	825	29	2		2	GEMIN6	2	39008788	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	11207016	39008788	204190585	15	46599											
TSPYL6	388951	broad.mit.edu	37	2	54482521	54482521	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	54482521	G	A	54482521	2	1	730	1	0	0	0	0	0	0	0	1	16675	1165	41	2		2	TSPYL6	2	54482521	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	15473733	54482521	188716852	16	46600											
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	71607375	71607375	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	71607375	T	C	71607375	2	2	730	1	0	0	0	0	0	0	0	1	18067	1596	56	3		3	ZNF638	2	71607375	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	17124854	71607375	171591998	17	46601											
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97359251	97359251	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	97359251	A	T	97359251	3	4	730	1	0	0	0	0	1	0	0	0	5821	217	8	5	3504	5	FER1L5	2	97359251	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	25751876	97359251	145840122	18	46602											
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	107459932	107459932	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	107459932	C	G	107459932	3	3	730	1	0	0	0	0	1	0	0	0	15234	507	18	4	1194	4	ST6GAL2	2	107459932	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	10100681	107459932	135739441	19	46603											
RANBP2	5903	ucsc.edu;bcgsc.ca	37	2	109381778	109381778	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	109381778	C	G	109381778	3	3	730	1	0	0	0	0	1	0	0	0	13041	855	30	4	4861	4	RANBP2	2	109381778	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	1921846	109381778	133817595	20	46604											
TNFAIP6	7130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152235994	152235994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	152235994	A	T	152235994	3	4	730	1	0	0	0	0	1	0	0	0	16287	391	14	5	803	5	TNFAIP6	2	152235994	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	42854216	152235994	90963379	21	46605											
SLC4A10	57282	bcgsc.ca	37	2	162821643	162821643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	162821643	C	T	162821643	3	4	730	1	0	0	0	0	1	0	0	0	14664	623	22	2	3294	2	SLC4A10	2	162821643	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	10585649	162821643	80377730	22	46606											
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217285132	217285132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	217285132	G	A	217285132	3	1	730	1	0	0	0	0	1	0	0	0	14786	971	34	2	983	2	SMARCAL1	2	217285132	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	54463489	217285132	25914241	23	46607											
IGFBP5	3488	ucsc.edu;bcgsc.ca	37	2	217541549	217541549	+	Silent	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	217541549	C	G	217541549	2	3	730	1	0	0	0	0	0	0	0	1	7589	842	30	4		4	IGFBP5	2	217541549	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	256417	217541549	25657824	24	46608											
KCNJ13	3769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233633228	233633228	+	Silent	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	233633228	A	T	233633228	2	4	730	1	0	0	0	0	0	0	0	1	8054	291	11	5		5	KCNJ13	2	233633228	Silent	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	16091679	233633228	9566145	25	46609											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233659498	233659498	+	Silent	SNP	T	T	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	233659498	T	A	233659498	2	1	730	1	0	0	0	0	0	0	0	1	6385	1596	56	5		5	GIGYF2	2	233659498	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	26270	233659498	9539875	26	46610											
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113697143	113697143	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	113697143	A	C	113697143	3	2	730	1	0	0	0	0	1	0	0	0	8236	11	1	5	322	5	KIAA1407	3	113697143	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10		113697143	84325287	27	46611											
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183669307	183669307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	183669307	G	C	183669307	3	2	730	1	0	0	0	0	1	0	0	0	56	1000	35	4	1491	4	ABCC5	3	183669307	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	69972164	183669307	14353123	28	46612											
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	197408102	197408102	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	197408102	G	A	197408102	2	1	730	1	0	0	0	0	0	0	0	1	8169	933	33	2		2	KIAA0226	3	197408102	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	13738795	197408102	614328	29	46613											
GAK	2580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	882734	882734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	882734	T	A	882734	3	1	730	1	0	0	0	0	1	0	0	0	6202	1580	55	5	2901	5	GAK	4	882734	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10		882734	190271542	30	46614											
ADD1	118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2916729	2916729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	2916729	A	G	2916729	3	3	730	1	0	0	0	0	1	0	0	0	304	391	14	3	1863	3	ADD1	4	2916729	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	2033995	2916729	188237547	31	46615											
SLC10A4	201780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48487158	48487158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	48487158	A	C	48487158	3	2	730	1	0	0	0	0	1	0	0	0	14389	86	3	5	806	5	SLC10A4	4	48487158	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	45570429	48487158	142667118	32	46616											
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57182735	57182735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	57182735	G	A	57182735	3	1	730	1	0	0	0	0	1	0	0	0	8222	1175	41	2	3085	2	KIAA1211	4	57182735	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	8695577	57182735	133971541	33	46617											
BTC	685	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	75695357	75695357	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	75695357	A	C	75695357	3	2	730	1	0	0	0	0	1	0	0	0	1551	333	12	5	478	5	BTC	4	75695357	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	18512622	75695357	115458919	34	46618											
C4orf17	84103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100434294	100434294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	100434294	T	C	100434294	3	2	730	1	0	0	0	0	1	0	0	0	2254	1493	52	3	58	3	C4orf17	4	100434294	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	24738937	100434294	90719982	35	46619											
TBCK	93627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	107163709	107163709	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	-	107163709	C	-	107163709	7	5	730	1	0	1	0	1	0	0	0	0	15648	507	18	0	1653	0	TBCK	4	107163709	Frame_Shift_Del	DEL	C	TCGA-MH-A55Z-01A-11D-A26P-10	6729415	107163709	83990567	36	46620											
NDST3	9348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	118975229	118975229	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	118975229	T	G	118975229	3	3	730	1	0	0	0	0	1	0	0	0	10264	1551	54	5	166	5	NDST3	4	118975229	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	11811520	118975229	72179047	37	46621											
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	152096316	152096316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	152096316	T	A	152096316	3	1	730	1	0	0	0	0	1	0	0	0	14262	1551	54	5	2232	5	SH3D19	4	152096316	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	33121087	152096316	39057960	38	46622	687	3									
SH3D19	152503	hgsc.bcm.edu;bcgsc.ca	37	4	152096322	152096322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	152096322	G	A	152096322	3	1	730	1	0	0	0	0	1	0	0	0	14262	942	33	2	2238	2	SH3D19	4	152096322	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	6	152096322	39057954	39	46623	687	3									
SH3D19	152503	hgsc.bcm.edu;bcgsc.ca	37	4	152096326	152096326	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	-	152096326	C	-	152096326	7	5	730	1	0	1	0	1	0	0	0	0	14262	797	28	0	2242	0	SH3D19	4	152096326	Frame_Shift_Del	DEL	C	TCGA-MH-A55Z-01A-11D-A26P-10	4	152096326	39057950	40	46624	687	3									
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	162307106	162307106	+	Silent	SNP	T	T	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	162307106	T	A	162307106	2	1	730	1	0	0	0	0	0	0	0	1	6087	1744	61	5		5	FSTL5	4	162307106	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	10210780	162307106	28847170	41	46625											
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177089815	177089815	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	177089815	G	C	177089815	3	2	730	1	0	0	0	0	1	0	0	0	17289	1145	40	4	3194	4	WDR17	4	177089815	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	14782709	177089815	14064461	42	46626											
CCDC110	256309	ucsc.edu;bcgsc.ca	37	4	186382296	186382296	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	186382296	A	G	186382296	2	3	730	1	0	0	0	0	0	0	0	1	2749	156	6	3		3	CCDC110	4	186382296	Silent	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	9292481	186382296	4771980	43	46627											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72183032	72183032	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	72183032	T	G	72183032	4	3	730	1	0	0	0	0	0	1	0	0	16347	1764	61	5	1332	5	TNPO1	5	72183032	Nonsense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10		72183032	108732228	44	46628											
BRD8	10902	ucsc.edu;bcgsc.ca	37	5	137507060	137507060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	137507060	C	T	137507060	3	4	730	1	0	0	0	0	1	0	0	0	1508	835	29	2	3864	2	BRD8	5	137507060	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	65324028	137507060	43408200	45	46629											
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138718252	138718252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	138718252	G	A	138718252	3	1	730	1	0	0	0	0	1	0	0	0	14475	1203	42	2	1781	2	SLC23A1	5	138718252	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	1211192	138718252	42197008	46	46630											
FAT2	2196	hgsc.bcm.edu	37	5	150911353	150911353	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	150911353	G	A	150911353	2	1	730	1	0	0	0	0	0	0	0	1	5697	1306	46	2		2	FAT2	5	150911353	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	12193101	150911353	30003907	47	46631											
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169680134	169680134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	169680134	C	T	169680134	3	4	730	1	0	0	0	0	1	0	0	0	8699	768	27	1	383	1	LCP2	5	169680134	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	18768781	169680134	11235126	48	46632											
ADAMTS2	9509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178553061	178553061	+	Silent	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	178553061	G	T	178553061	2	4	730	1	0	0	0	0	0	0	0	1	265	1103	39	4		4	ADAMTS2	5	178553061	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	8872927	178553061	2362199	49	46633											
CANX	821	hgsc.bcm.edu;bcgsc.ca	37	5	179136997	179136997	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	-	179136997	C	-	179136997	7	5	730	1	0	1	0	1	0	0	0	0	2620	478	17	0	674	0	CANX	5	179136997	Frame_Shift_Del	DEL	C	TCGA-MH-A55Z-01A-11D-A26P-10	583936	179136997	1778263	50	46634											
ZSCAN12	9753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	28359289	28359289	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	28359289	C	G	28359289	3	3	730	1	0	0	0	0	1	0	0	0	18240	826	29	4	1061	4	ZSCAN12	6	28359289	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		28359289	142755778	51	46635											
HSD17B8	7923	broad.mit.edu	37	6	33172821	33172821	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	33172821	C	T	33172821	2	4	730	1	0	0	0	0	0	0	0	1	7396	610	22	2		2	HSD17B8	6	33172821	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	4813532	33172821	137942246	52	46636											
TAAR9	134860	broad.mit.edu;bcgsc.ca	37	6	132859693	132859693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	132859693	A	C	132859693	3	2	730	1	0	0	0	0	1	0	0	0	15506	188	7	5	267	5	TAAR9	6	132859693	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	99686872	132859693	38255374	53	46637											
C6orf211	79624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151790234	151790234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	151790234	G	A	151790234	3	1	730	1	0	0	0	0	1	0	0	0	2356	1348	47	2	1333	2	C6orf211	6	151790234	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	18930541	151790234	19324833	54	46638											
EIF2AK1	27102	broad.mit.edu;bcgsc.ca	37	7	6078295	6078296	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	6078296	-	A	6078295	7	5	730	1	0	1	1	0	0	0	0	0	4998	1638	57	0	789	0	EIF2AK1	7	6078295	Frame_Shift_Ins	INS	-	TCGA-MH-A55Z-01A-11D-A26P-10		6078295	153060368	55	46639	688	3									
EIF2AK1	27102	hgsc.bcm.edu;bcgsc.ca	37	7	6078297	6078297	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	6078297	C	G	6078297	3	3	730	1	0	0	0	0	1	0	0	0	4998	564	20	4	791	4	EIF2AK1	7	6078297	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	2	6078297	153060366	56	46640	688	3									
EIF2AK1	27102	broad.mit.edu;bcgsc.ca	37	7	6078298	6078299	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	6078299	-	A	6078298	7	5	730	1	0	1	1	0	0	0	0	0	4998	1580	55	0	792	0	EIF2AK1	7	6078298	Frame_Shift_Ins	INS	-	TCGA-MH-A55Z-01A-11D-A26P-10	1	6078298	153060365	57	46641	688	3									
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	26224635	26224636	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	-	26224636	CT	-	26224635	7	5	730	1	0	1	0	1	0	0	0	0	10376	564	20	0	1331	0	NFE2L3	7	26224635	Frame_Shift_Del	DEL	CT	TCGA-MH-A55Z-01A-11D-A26P-10	20146337	26224635	132914028	58	46642											
SKAP2	8935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26729973	26729973	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	26729973	C	G	26729973	3	3	730	1	0	0	0	0	1	0	0	0	14369	922	32	4	286	4	SKAP2	7	26729973	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	505338	26729973	132408690	59	46643											
PLEKHA8	84725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	30094389	30094389	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	30094389	T	C	30094389	2	2	730	1	0	0	0	0	0	0	0	1	12069	1538	54	3		3	PLEKHA8	7	30094389	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	3364416	30094389	129044274	60	46644											
POLM	27434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44114102	44114102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	44114102	G	A	44114102	3	1	730	1	0	0	0	0	1	0	0	0	12213	1261	44	2	641	2	POLM	7	44114102	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	14019713	44114102	115024561	61	46645											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44735721	44735721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	44735721	G	T	44735721	3	4	730	1	0	0	0	0	1	0	0	0	10846	1357	47	4	1985	4	OGDH	7	44735721	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	621619	44735721	114402942	62	46646	689	2									
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44735723	44735723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	44735723	C	A	44735723	3	1	730	1	0	0	0	0	1	0	0	0	10846	739	26	4	1987	4	OGDH	7	44735723	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	2	44735723	114402940	63	46647	689	2									
GRB10	2887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	50660660	50660660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	50660660	C	T	50660660	3	4	730	1	0	0	0	0	1	0	0	0	6763	565	20	2	14	2	GRB10	7	50660660	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	5924937	50660660	108478003	64	46648											
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	68107797	68107797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	68107797	C	T	68107797	3	4	730	1	0	0	0	0	1	0	0	0	3964	565	20	2	3862	2	CSPP1	8	68107797	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		68107797	78256225	65	46649											
DCAF13	25879	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	104444950	104444950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	104444950	G	T	104444950	3	4	730	1	0	0	0	0	1	0	0	0	4268	971	34	4	1248	4	DCAF13	8	104444950	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	36337153	104444950	41919072	66	46650											
PKHD1L1	93035	broad.mit.edu	37	8	110453596	110453596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	110453596	G	A	110453596	3	1	730	1	0	0	0	0	1	0	0	0	11979	1348	47	2	4326	2	PKHD1L1	8	110453596	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	6008646	110453596	35910426	67	46651											
PUF60	22827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144902839	144902839	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	144902839	T	C	144902839	2	2	730	1	0	0	0	0	0	0	0	1	12837	1490	52	3		3	PUF60	8	144902839	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	34449243	144902839	1461183	68	46652											
VLDLR	7436	hgsc.bcm.edu;bcgsc.ca	37	9	2643309	2643310	+	In_Frame_Ins	INS	-	-	GCA	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	GCA	2643310	-	GCA	2643309	7	5	730	1	0	1	1	0	0	0	0	0	17186	1696	59	0	616	0	VLDLR	9	2643309	In_Frame_Ins	INS	-	TCGA-MH-A55Z-01A-11D-A26P-10		2643309	138570122	69	46653											
STOML2	30968	ucsc.edu;bcgsc.ca	37	9	35102144	35102144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	35102144	C	G	35102144	3	3	730	1	0	0	0	0	1	0	0	0	15326	912	32	4	871	4	STOML2	9	35102144	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	32458835	35102144	106111287	70	46654											
ALDH1B1	219	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	38397069	38397069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	38397069	T	C	38397069	3	2	730	1	0	0	0	0	1	0	0	0	493	1638	57	3	1326	3	ALDH1B1	9	38397069	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	3294925	38397069	102816362	71	46655											
ZNF462	58499	broad.mit.edu	37	9	109689599	109689599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	109689599	A	G	109689599	3	3	730	1	0	0	0	0	1	0	0	0	17938	64	3	3	3412	3	ZNF462	9	109689599	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	71292530	109689599	31523832	72	46656											
C9orf50	375759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132377793	132377793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	132377793	T	C	132377793	3	2	730	1	0	0	0	0	1	0	0	0	2489	1725	60	3	461	3	C9orf50	9	132377793	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	22688194	132377793	8835638	73	46657											
TPRN	286262	hgsc.bcm.edu	37	9	140094091	140094091	+	Missense_Mutation	SNP	A	A	G	rs60910563		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	140094091	A	G	140094091	3	3	730	1	0	0	0	0	1	0	0	0	16433	188	7	3	1158	3	TPRN	9	140094091	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	7716298	140094091	1119340	74	46658											
ZNF438	220929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	31134006	31134006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	31134006	G	A	31134006	3	1	730	1	0	0	0	0	1	0	0	0	17922	1000	35	2	119	2	ZNF438	10	31134006	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		31134006	104400741	75	46659											
ZNF33B	7582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43088357	43088357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	43088357	T	C	43088357	3	2	730	1	0	0	0	0	1	0	0	0	17867	1406	49	3	299	3	ZNF33B	10	43088357	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	11954351	43088357	92446390	76	46660											
RRP12	23223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99116859	99116859	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	99116859	G	A	99116859	4	1	730	1	0	0	0	0	0	1	0	0	13699	1066	37	1	11	1	RRP12	10	99116859	Nonsense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	56028502	99116859	36417888	77	46661											
AFAP1L2	84632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	116100456	116100456	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	116100456	G	A	116100456	2	1	730	1	0	0	0	0	0	0	0	1	355	1165	41	2		2	AFAP1L2	10	116100456	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	16983597	116100456	19434291	78	46662											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	129902143	129902143	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	-	129902143	G	-	129902143	7	5	730	1	0	1	0	1	0	0	0	0	9605	1348	47	0	1821	0	MKI67	10	129902143	Frame_Shift_Del	DEL	G	TCGA-MH-A55Z-01A-11D-A26P-10	13801687	129902143	5632604	79	46663											
OR51G2	81282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4936503	4936503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	4936503	T	C	4936503	3	2	730	1	0	0	0	0	1	0	0	0	11106	1406	49	3	557	3	OR51G2	11	4936503	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10		4936503	130070013	80	46664											
BDNF	627	hgsc.bcm.edu;bcgsc.ca	37	11	27680049	27680056	+	Frame_Shift_Del	DEL	CATGGGGG	CATGGGGG	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	CATGGGGG	CATGGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	-	27680056	CATGGGGG	-	27680049	7	5	730	1	0	1	0	1	0	0	0	0	1394	826	29	0	684	0	BDNF	11	27680049	Frame_Shift_Del	DEL	CATGGGGG	TCGA-MH-A55Z-01A-11D-A26P-10	22743546	27680049	107326467	81	46665											
SYT13	57586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	45277229	45277229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	45277229	G	C	45277229	3	2	730	1	0	0	0	0	1	0	0	0	15481	1000	35	4	903	4	SYT13	11	45277229	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	17597180	45277229	89729287	82	46666											
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65319017	65319017	+	Splice_Site	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	65319017	A	T	65319017	5	4	730	1	0	0	0	0	0	0	1	0	9082	173	6	5	2441	5	LTBP3	11	65319017	Splice_Site	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	20041788	65319017	69687499	83	46667											
SIPA1	6494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65412463	65412463	+	Missense_Mutation	SNP	G	G	A	rs146916012		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	65412463	G	A	65412463	3	1	730	1	0	0	0	0	1	0	0	0	14341	1116	39	1	1036	1	SIPA1	11	65412463	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	93446	65412463	69594053	84	46668											
EXPH5	23086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108380539	108380539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	108380539	C	T	108380539	3	4	730	1	0	0	0	0	1	0	0	0	5324	922	32	2	278	2	EXPH5	11	108380539	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	42968076	108380539	26625977	85	46669											
CHEK1	1111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	125497532	125497532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	125497532	A	C	125497532	3	2	730	1	0	0	0	0	1	0	0	0	3336	69	3	5	102	5	CHEK1	11	125497532	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	17116993	125497532	9508984	86	46670											
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	129747271	129747271	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	129747271	G	A	129747271	2	1	730	1	0	0	0	0	0	0	0	1	10391	1020	36	2		2	NFRKB	11	129747271	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	4249739	129747271	5259245	87	46671											
C12orf57	113246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7053729	7053729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	7053729	G	T	7053729	3	4	730	1	0	0	0	0	1	0	0	0	1703	1261	44	4	149	4	C12orf57	12	7053729	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		7053729	126798166	88	46672											
APOBEC1	339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7818467	7818467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	7818467	A	G	7818467	3	3	730	1	0	0	0	0	1	0	0	0	787	217	8	3	728	3	APOBEC1	12	7818467	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	764738	7818467	126033428	89	46673											
TAS2R43	259289	hgsc.bcm.edu	37	12	11244149	11244149	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	-	11244149	G	-	11244149	7	5	730	1	0	1	0	1	0	0	0	0	15593	971	34	0	253	0	TAS2R43	12	11244149	Frame_Shift_Del	DEL	G	TCGA-MH-A55Z-01A-11D-A26P-10	3425682	11244149	122607746	90	46674											
PLEKHA5	54477	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	19500042	19500042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	19500042	A	G	19500042	3	3	730	1	0	0	0	0	1	0	0	0	12066	179	7	3	2714	3	PLEKHA5	12	19500042	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	8255893	19500042	114351853	91	46675											
KIF21A	55605	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	39709737	39709737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	39709737	T	C	39709737	3	2	730	1	0	0	0	0	1	0	0	0	8295	1696	59	3	1116	3	KIF21A	12	39709737	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	20209695	39709737	94142158	92	46676											
SPRYD4	283377	broad.mit.edu;bcgsc.ca	37	12	56862411	56862411	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	56862411	C	T	56862411	2	4	730	1	0	0	0	0	0	0	0	1	15122	747	26	2		2	SPRYD4	12	56862411	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	17152674	56862411	76989484	93	46677											
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101588897	101588897	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	101588897	C	T	101588897	2	4	730	1	0	0	0	0	0	0	0	1	14684	581	21	2		2	SLC5A8	12	101588897	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	44726486	101588897	32262998	94	46678											
BTBD11	121551	hgsc.bcm.edu	37	12	107713245	107713245	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	107713245	G	A	107713245	2	1	730	1	0	0	0	0	0	0	0	1	1541	1074	38	1		1	BTBD11	12	107713245	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	6124348	107713245	26138650	95	46679											
PHF11	51131	bcgsc.ca	37	13	50098263	50098272	+	Frame_Shift_Del	DEL	CAGGACTTCT	CAGGACTTCT	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	CAGGACTTCT	CAGGACTTCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	-	50098272	CAGGACTTCT	-	50098263	7	5	730	1	0	1	0	1	0	0	0	0	11829	710	25	0	710	0	PHF11	13	50098263	Frame_Shift_Del	DEL	CAGGACTTCT	TCGA-MH-A55Z-01A-11D-A26P-10		50098263	65071615	96	46680											
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	94197565	94197565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	94197565	A	T	94197565	3	4	730	1	0	0	0	0	1	0	0	0	6609	11	1	5	216	5	GPC6	13	94197565	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	44099302	94197565	20972313	97	46681											
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	42360768	42360768	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	42360768	C	T	42360768	2	4	730	1	0	0	0	0	0	0	0	1	8948	709	25	2		2	LRFN5	14	42360768	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		42360768	64988772	98	46682											
NEK9	91754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75558059	75558059	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	75558059	G	A	75558059	4	1	730	1	0	0	0	0	0	1	0	0	10338	1124	39	1	599	1	NEK9	14	75558059	Nonsense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	33197291	75558059	31791481	99	46683											
MTMR10	54893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31251264	31251264	+	Silent	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	31251264	G	C	31251264	2	2	730	1	0	0	0	0	0	0	0	1	9946	1219	43	4		4	MTMR10	15	31251264	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		31251264	71280128	100	46684											
COPS2	9318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49421727	49421727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	49421727	G	A	49421727	3	1	730	1	0	0	0	0	1	0	0	0	3735	971	34	2	268	2	COPS2	15	49421727	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	18170463	49421727	53109665	101	46685											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51294808	51294808	+	Silent	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	51294808	T	G	51294808	2	3	730	1	0	0	0	0	0	0	0	1	752	1538	54	5		5	AP4E1	15	51294808	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	1873081	51294808	51236584	102	46686											
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4164714	4164714	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	4164714	G	A	4164714	2	1	730	1	0	0	0	0	0	0	0	1	301	991	35	2		2	ADCY9	16	4164714	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		4164714	86190039	103	46687											
MAP2K4	6416	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	11998978	11998978	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	T	11998978	C	T	11998978	2	4	730	1	0	0	0	0	0	0	0	1	9246	489	17	2		2	MAP2K4	17	11998978	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		11998978	69196232	104	46688											
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17075111	17075111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	17075111	G	A	17075111	3	1	730	1	0	0	0	0	1	0	0	0	9750	1116	39	1	2305	1	MPRIP	17	17075111	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	5076133	17075111	64120099	105	46689											
PCGF2	7703	broad.mit.edu	37	17	36891628	36891628	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	36891628	T	G	36891628	3	3	730	1	0	0	0	0	1	0	0	0	11582	1696	59	5	155	5	PCGF2	17	36891628	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	19816517	36891628	44303582	106	46690											
PSMC3IP	29893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40729246	40729246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	40729246	G	C	40729246	3	2	730	1	0	0	0	0	1	0	0	0	12698	932	33	4	467	4	PSMC3IP	17	40729246	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	3837618	40729246	40465964	107	46691											
NPEPPS	9520	broad.mit.edu	37	17	45682709	45682709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	45682709	G	A	45682709	3	1	730	1	0	0	0	0	1	0	0	0	10582	1174	41	2	1952	2	NPEPPS	17	45682709	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	4953463	45682709	35512501	108	46692											
SLC35B1	10237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47780367	47780367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	47780367	T	G	47780367	3	3	730	1	0	0	0	0	1	0	0	0	14588	1464	51	5	207	5	SLC35B1	17	47780367	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	2097658	47780367	33414843	109	46693											
TRIM25	7706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	54969126	54969126	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	54969126	C	G	54969126	3	3	730	1	0	0	0	0	1	0	0	0	16511	739	26	4	68	4	TRIM25	17	54969126	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	7188759	54969126	26226084	110	46694											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21508090	21508090	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	21508090	T	C	21508090	2	2	730	1	0	0	0	0	0	0	0	1	8614	1751	61	3		3	LAMA3	18	21508090	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10		21508090	56569158	111	46695											
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	72345617	72345618	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	AT	72345618	GC	AT	72345617	3	1	730	1	0	0	0	0	1	0	0	0	17899	1319	46	2	2644	2	ZNF407	18	72345617	Missense_Mutation	DNP	GC	TCGA-MH-A55Z-01A-11D-A26P-10	50837527	72345617	5731631	112	46696											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11134305	11134305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	11134305	A	G	11134305	3	3	730	1	0	0	0	0	1	0	0	0	14783	15	1	3	3045	3	SMARCA4	19	11134305	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10		11134305	47994678	113	46697											
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41599643	41599643	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	41599643	T	G	41599643	3	3	730	1	0	0	0	0	1	0	0	0	4163	1841	64	5	962	5	CYP2A13	19	41599643	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	30465338	41599643	17529340	114	46698											
NPEPL1	79716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	57282247	57282247	+	Silent	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	C	57282247	A	C	57282247	2	2	730	1	0	0	0	0	0	0	0	1	10581	117	5	5		5	NPEPL1	20	57282247	Silent	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10		57282247	5743273	115	46699											
RRP1B	23076	broad.mit.edu	37	21	45107950	45107950	+	Silent	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	45107950	C	G	45107950	2	3	730	1	0	0	0	0	0	0	0	1	13701	610	22	4		4	RRP1B	21	45107950	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		45107950	3021945	116	46700											
KRTAP10-11	386678	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46066418	46066418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	46066418	G	A	46066418	3	1	730	1	0	0	0	0	1	0	0	0	8514	1058	37	1	45	1	KRTAP10-11	21	46066418	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	958468	46066418	2063477	117	46701											
BID	637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18226632	18226632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	G	18226632	A	G	18226632	3	3	730	1	0	0	0	0	1	0	0	0	1430	420	15	3	443	3	BID	22	18226632	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10		18226632	33077934	118	46702											
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	29885562	G	A	29885562	3	1	730	1	0	0	0	0	1	0	0	0	10321	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	11658930	29885562	21419004	119	46703			1	158		3	3	77	N	T_G_-	4.070279e-08
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	AGGAAG	29885623	-	AGGAAG	29885622	7	5	730	1	0	1	1	0	0	0	0	0	10321	247	9	0	2007	0	NEFH	22	29885622	In_Frame_Ins	INS	-	TCGA-MH-A55Z-01A-11D-A26P-10	60	29885622	21418944	120	46704			1	158		3	3	77	N	T_G_-	4.070279e-08
NEFH	4744	hgsc.bcm.edu	37	22	29885638	29885638	+	Missense_Mutation	SNP	T	T	A	rs190692435		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	29885638	T	A	29885638	3	1	730	1	0	0	0	0	1	0	0	0	10321	1696	59	5	2023	5	NEFH	22	29885638	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	16	29885638	21418928	121	46705			1	158		3	3	77	N	T_G_-	4.070279e-08
LPAR4	2846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	78010716	78010716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	A	78010716	C	A	78010716	3	1	730	1	0	0	0	0	1	0	0	0	8914	710	25	4	352	4	LPAR4	23	78010716	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		78010716	77259844	122	46706											
MECR	51102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	29557328	29557328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	29557328	C	T	29557328	3	4	731	1	0	0	0	0	1	0	0	0	9431	768	27	1	1070	1	MECR	1	29557328	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		29557328	219693293	1	46707											
INTS3	65123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153740253	153740253	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	153740253	G	T	153740253	4	4	731	1	0	0	0	0	0	1	0	0	7786	1175	41	4	2276	4	INTS3	1	153740253	Nonsense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	124182925	153740253	95510368	2	46708											
CFH	3075	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	196654324	196654324	+	Silent	SNP	A	A	G	rs1061147	byfrequency;alternate_allele	TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	196654324	A	G	196654324	2	3	731	1	0	0	0	0	0	0	0	1	3285	117	5	3		3	CFH	1	196654324	Silent	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	42914071	196654324	52596297	3	46709											
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	198678922	198678922	+	Silent	SNP	C	C	T	rs200643724		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	198678922	C	T	198678922	2	4	731	1	0	0	0	0	0	0	0	1	12810	535	19	1		1	PTPRC	1	198678922	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	2024598	198678922	50571699	4	46710											
GPR37L1	9283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	202097357	202097357	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	202097357	C	T	202097357	2	4	731	1	0	0	0	0	0	0	0	1	6699	842	30	2		2	GPR37L1	1	202097357	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	3418435	202097357	47153264	5	46711											
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211449723	211449723	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	211449723	G	C	211449723	3	2	731	1	0	0	0	0	1	0	0	0	13197	1029	36	4	497	4	RCOR3	1	211449723	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	9352366	211449723	37800898	6	46712											
CENPF	1063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214815375	214815375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	214815375	G	T	214815375	4	4	731	1	0	0	0	0	0	1	0	0	3233	1175	41	4	3736	4	CENPF	1	214815375	Nonsense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	3365652	214815375	34435246	7	46713											
CAPN2	824	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223959597	223959597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	223959597	C	G	223959597	3	3	731	1	0	0	0	0	1	0	0	0	2629	875	31	4	2071	4	CAPN2	1	223959597	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	9144222	223959597	25291024	8	46714											
SNAP47	116841	hgsc.bcm.edu;bcgsc.ca	37	1	227946738	227946738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	227946738	C	A	227946738	3	1	731	1	0	0	0	0	1	0	0	0	14845	796	28	4	685	4	SNAP47	1	227946738	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	3987141	227946738	21303883	9	46715											
SDCCAG8	10806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	243419490	243419490	+	Silent	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	243419490	G	A	243419490	2	1	731	1	0	0	0	0	0	0	0	1	13972	1103	39	1		1	SDCCAG8	1	243419490	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	15472752	243419490	5831131	10	46716											
MOGS	7841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74688599	74688599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	74688599	C	T	74688599	3	4	731	1	0	0	0	0	1	0	0	0	9704	864	30	2	200	2	MOGS	2	74688599	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		74688599	168510774	11	46717											
ACMSD	130013	hgsc.bcm.edu;broad.mit.edu	37	2	135621133	135621133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	135621133	G	A	135621133	3	1	731	1	0	0	0	0	1	0	0	0	144	1116	39	1	436	1	ACMSD	2	135621133	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	60932534	135621133	107578240	12	46718											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182774650	182774650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	182774650	C	G	182774650	3	3	731	1	0	0	0	0	1	0	0	0	15195	855	30	4	1472	4	SSFA2	2	182774650	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	47153517	182774650	60424723	13	46719											
NCKAP1	10787	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	183792879	183792879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	183792879	C	T	183792879	3	4	731	1	0	0	0	0	1	0	0	0	10228	855	30	2	252	2	NCKAP1	2	183792879	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	1018229	183792879	59406494	14	46720											
KCNH8	131096	broad.mit.edu;bcgsc.ca	37	3	19554559	19554559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	19554559	C	T	19554559	3	4	731	1	0	0	0	0	1	0	0	0	8045	855	30	2	2227	2	KCNH8	3	19554559	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		19554559	178467871	15	46721											
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36874430	36874430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	36874430	C	T	36874430	3	4	731	1	0	0	0	0	1	0	0	0	16466	536	19	1	2277	1	TRANK1	3	36874430	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	17319871	36874430	161148000	16	46722											
KLHDC8B	200942	ucsc.edu;bcgsc.ca	37	3	49212587	49212587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	49212587	G	A	49212587	3	1	731	1	0	0	0	0	1	0	0	0	8370	1348	47	2	873	2	KLHDC8B	3	49212587	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	12338157	49212587	148809843	17	46723											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52439271	52439271	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	-	52439271	G	-	52439271	7	5	731	1	0	1	0	1	0	0	0	0	1311	1348	47	0	1246	0	BAP1	3	52439271	Frame_Shift_Del	DEL	G	TCGA-MH-A560-01A-11D-A26P-10	3226684	52439271	145583159	18	46724	690	2									
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	3	52439275	52439275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	52439275	C	A	52439275	3	1	731	1	0	0	0	0	1	0	0	0	1311	797	28	4	1250	4	BAP1	3	52439275	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	4	52439275	145583155	19	46725	690	2									
COL8A1	1295	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	99514774	99514774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	99514774	G	A	99514774	3	1	731	1	0	0	0	0	1	0	0	0	3707	1319	46	2	2035	2	COL8A1	3	99514774	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	47075499	99514774	98507656	20	46726											
XRN1	54464	broad.mit.edu;bcgsc.ca	37	3	142030528	142030528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	142030528	C	T	142030528	3	4	731	1	0	0	0	0	1	0	0	0	17471	797	28	2	178	2	XRN1	3	142030528	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	42515754	142030528	55991902	21	46727											
CLDN11	5010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	170141043	170141043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	170141043	C	T	170141043	3	4	731	1	0	0	0	0	1	0	0	0	3475	643	23	1	325	1	CLDN11	3	170141043	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	28110515	170141043	27881387	22	46728											
MFN1	55669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179082985	179082985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	179082985	C	G	179082985	3	3	731	1	0	0	0	0	1	0	0	0	9530	913	32	4	747	4	MFN1	3	179082985	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	8941942	179082985	18939445	23	46729											
DSPP	1834	hgsc.bcm.edu	37	4	88536475	88536475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	88536475	A	C	88536475	3	2	731	1	0	0	0	0	1	0	0	0	4784	11	1	5	2675	5	DSPP	4	88536475	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10		88536475	102617801	24	46730											
FGG	2266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155526043	155526043	+	Silent	SNP	T	T	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	155526043	T	C	155526043	2	2	731	1	0	0	0	0	0	0	0	1	5877	1664	58	3		3	FGG	4	155526043	Silent	SNP	T	TCGA-MH-A560-01A-11D-A26P-10	66989568	155526043	35628233	25	46731											
CDH18	1016	broad.mit.edu;bcgsc.ca	37	5	19612631	19612631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	19612631	C	T	19612631	3	4	731	1	0	0	0	0	1	0	0	0	3105	594	21	2	1681	2	CDH18	5	19612631	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		19612631	161302629	26	46732											
AMACR	23600	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34004755	34004755	+	Missense_Mutation	SNP	A	A	G	rs147265006		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	34004755	A	G	34004755	3	3	731	1	0	0	0	0	1	0	0	0	562	217	8	3	1014	3	AMACR	5	34004755	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	14392124	34004755	146910505	27	46733											
PPWD1	23398	broad.mit.edu;bcgsc.ca	37	5	64867921	64867921	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	-	64867921	C	-	64867921	7	5	731	1	0	1	0	1	0	0	0	0	12424	854	30	0	795	0	PPWD1	5	64867921	Frame_Shift_Del	DEL	C	TCGA-MH-A560-01A-11D-A26P-10	30863166	64867921	116047339	28	46734											
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32052212	32052212	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	32052212	C	T	32052212	2	4	731	1	0	0	0	0	0	0	0	1	16358	755	27	1		1	TNXB	6	32052212	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		32052212	139062855	29	46735											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	11675888	11675888	+	Silent	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	11675888	G	A	11675888	2	1	731	1	0	0	0	0	0	0	0	1	15891	1074	38	1		1	THSD7A	7	11675888	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		11675888	147462775	30	46736											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100352929	100352929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	100352929	C	G	100352929	3	3	731	1	0	0	0	0	1	0	0	0	17525	681	24	4	3259	4	ZAN	7	100352929	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	88677041	100352929	58785734	31	46737											
IMMP2L	83943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	111161447	111161447	+	Silent	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	111161447	G	A	111161447	2	1	731	1	0	0	0	0	0	0	0	1	7724	933	33	2		2	IMMP2L	7	111161447	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	10808518	111161447	47977216	32	46738											
KIAA1147	57189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141365048	141365048	+	Silent	SNP	A	A	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	141365048	A	T	141365048	2	4	731	1	0	0	0	0	0	0	0	1	8217	59	3	5		5	KIAA1147	7	141365048	Silent	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	30203601	141365048	17773615	33	46739											
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148496376	148496376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	148496376	G	A	148496376	3	1	731	1	0	0	0	0	1	0	0	0	4056	1145	40	1	2224	1	CUL1	7	148496376	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	7131328	148496376	10642287	34	46740											
DEFA6	1671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6783427	6783427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	6783427	G	A	6783427	3	1	731	1	0	0	0	0	1	0	0	0	4395	1319	46	2	179	2	DEFA6	8	6783427	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		6783427	139580595	35	46741											
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	8655002	8655002	+	Splice_Site	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	8655002	C	A	8655002	5	1	731	1	0	0	0	0	0	0	1	0	9528	695	24	4	168	4	MFHAS1	8	8655002	Splice_Site	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	1871575	8655002	137709020	36	46742											
PNMA2	10687	broad.mit.edu	37	8	26365721	26365721	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	26365721	C	T	26365721	4	4	731	1	0	0	0	0	0	1	0	0	12161	595	21	2	547	2	PNMA2	8	26365721	Nonsense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	17710719	26365721	119998301	37	46743											
ADAM9	8754	ucsc.edu	37	8	38871523	38871523	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	38871523	C	T	38871523	2	4	731	1	0	0	0	0	0	0	0	1	253	477	17	2		2	ADAM9	8	38871523	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	12505802	38871523	107492499	38	46744											
ZC3H3	23144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144522452	144522452	+	Silent	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	144522452	G	T	144522452	2	4	731	1	0	0	0	0	0	0	0	1	17581	1219	43	4		4	ZC3H3	8	144522452	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	105650929	144522452	1841570	39	46745											
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135163729	135163729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	135163729	A	G	135163729	3	3	731	1	0	0	0	0	1	0	0	0	14154	372	13	3	1855	3	SETX	9	135163729	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10		135163729	6049702	40	46746											
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	8007636	8007636	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	8007636	G	C	8007636	3	2	731	1	0	0	0	0	1	0	0	0	15537	991	35	4	2173	4	TAF3	10	8007636	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		8007636	127527111	41	46747											
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12139749	12139749	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	12139749	G	C	12139749	3	2	731	1	0	0	0	0	1	0	0	0	4502	991	35	4	1455	4	DHTKD1	10	12139749	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	4132113	12139749	123394998	42	46748											
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	43659419	G	T	43659419	3	4	731	1	0	0	0	0	1	0	0	0	3941	1281	45	4	1100	4	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	31519670	43659419	91875328	43	46749											
NCOA4	8031	broad.mit.edu	37	10	51579175	51579175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	51579175	A	C	51579175	3	2	731	1	0	0	0	0	1	0	0	0	10238	188	7	5	88	5	NCOA4	10	51579175	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	7919756	51579175	83955572	44	46750											
DNA2	1763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70182074	70182074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	70182074	C	T	70182074	3	4	731	1	0	0	0	0	1	0	0	0	4598	864	30	2	597	2	DNA2	10	70182074	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	18602899	70182074	65352673	45	46751											
HELLS	3070	bcgsc.ca	37	10	96305697	96305697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	96305697	G	A	96305697	3	1	731	1	0	0	0	0	1	0	0	0	7053	1087	38	1	21	1	HELLS	10	96305697	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	26123623	96305697	39229050	46	46752											
HPSE2	60495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	100481443	100481443	+	Silent	SNP	C	C	T	rs200916817		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	100481443	C	T	100481443	2	4	731	1	0	0	0	0	0	0	0	1	7352	871	31	1		1	HPSE2	10	100481443	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	4175746	100481443	35053304	47	46753											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104123472	104123472	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	-	104123472	A	-	104123472	7	5	731	1	0	1	0	1	0	0	0	0	6278	131	5	0	2082	0	GBF1	10	104123472	Frame_Shift_Del	DEL	A	TCGA-MH-A560-01A-11D-A26P-10	3642029	104123472	31411275	48	46754											
ACADSB	36	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124800167	124800167	+	Silent	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	124800167	G	A	124800167	2	1	731	1	0	0	0	0	0	0	0	1	115	1310	46	2		2	ACADSB	10	124800167	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	20676695	124800167	10734580	49	46755											
FRG2B	441581	broad.mit.edu	37	10	135439107	135439107	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	135439107	C	T	135439107	2	4	731	1	0	0	0	0	0	0	0	1	6054	869	30	2		2	FRG2B	10	135439107	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	10638940	135439107	95640	50	46756											
CARNS1	57571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67186592	67186592	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	67186592	G	C	67186592	3	2	731	1	0	0	0	0	1	0	0	0	2658	1233	43	4	744	4	CARNS1	11	67186592	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		67186592	67819924	51	46757											
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	103006543	103006543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	103006543	A	G	103006543	3	3	731	1	0	0	0	0	1	0	0	0	4848	363	13	3	2506	3	DYNC2H1	11	103006543	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	35819951	103006543	31999973	52	46758											
C11orf53	341032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111156468	111156468	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	111156468	A	C	111156468	3	2	731	1	0	0	0	0	1	0	0	0	1650	304	11	5	410	5	C11orf53	11	111156468	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	8149925	111156468	23850048	53	46759											
FOXRED1	55572	broad.mit.edu	37	11	126146393	126146393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	126146393	A	G	126146393	3	3	731	1	0	0	0	0	1	0	0	0	6040	391	14	3	1110	3	FOXRED1	11	126146393	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	14989925	126146393	8860123	54	46760											
SLC6A13	6540	broad.mit.edu	37	12	347126	347126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	347126	C	T	347126	3	4	731	1	0	0	0	0	1	0	0	0	14689	835	29	2	1323	2	SLC6A13	12	347126	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		347126	133504769	55	46761											
TPI1	7167	broad.mit.edu;bcgsc.ca	37	12	6976718	6976718	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	6976718	C	T	6976718	2	4	731	1	0	0	0	0	0	0	0	1	16415	871	31	1		1	TPI1	12	6976718	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	6629592	6976718	126875177	56	46762											
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	60921717	60921717	+	Splice_Site	SNP	A	A	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	60921717	A	T	60921717	5	4	731	1	0	0	0	0	0	0	1	0	1774	405	14	5	270	5	C14orf39	14	60921717	Splice_Site	SNP	A	TCGA-MH-A560-01A-11D-A26P-10		60921717	46427823	57	46763											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29162089	29162089	+	Silent	SNP	T	T	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	29162089	T	A	29162089	2	1	731	1	0	0	0	0	0	0	0	1	1076	1509	53	5		5	ATAD5	17	29162089	Silent	SNP	T	TCGA-MH-A560-01A-11D-A26P-10		29162089	52033121	58	46764											
ORMDL3	94103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38078866	38078866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	38078866	G	C	38078866	3	2	731	1	0	0	0	0	1	0	0	0	11278	1078	38	4	66	4	ORMDL3	17	38078866	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	8916777	38078866	43116344	59	46765											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65110487	65110487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	65110487	T	G	65110487	3	3	731	1	0	0	0	0	1	0	0	0	7056	1493	52	5	1981	5	HELZ	17	65110487	Missense_Mutation	SNP	T	TCGA-MH-A560-01A-11D-A26P-10	27031621	65110487	16084723	60	46766											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	21511115	21511115	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	-	21511115	G	-	21511115	7	5	731	1	0	1	0	1	0	0	0	0	8614	1132	40	0	8959	0	LAMA3	18	21511115	Frame_Shift_Del	DEL	G	TCGA-MH-A560-01A-11D-A26P-10		21511115	56566133	61	46767											
DSC3	1825	bcgsc.ca	37	18	28598133	28598133	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	28598133	C	T	28598133	4	4	731	1	0	0	0	0	0	1	0	0	4769	856	30	2	1586	2	DSC3	18	28598133	Nonsense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	7087018	28598133	49479115	62	46768											
CREB3L3	84699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4171149	4171149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	4171149	G	T	4171149	3	4	731	1	0	0	0	0	1	0	0	0	3860	971	34	4	982	4	CREB3L3	19	4171149	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		4171149	54957834	63	46769											
OR7G3	390883	broad.mit.edu	37	19	9237432	9237432	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	9237432	G	C	9237432	3	2	731	1	0	0	0	0	1	0	0	0	11231	1164	41	4	746	4	OR7G3	19	9237432	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	5066283	9237432	49891551	64	46770											
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44739325	44739325	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	44739325	A	T	44739325	4	4	731	1	0	0	0	0	0	1	0	0	17793	247	9	5	756	5	ZNF227	19	44739325	Nonsense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	35501893	44739325	14389658	65	46771											
C5AR1	728	broad.mit.edu	37	19	47823729	47823729	+	Missense_Mutation	SNP	G	G	A	rs201394213		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	47823729	G	A	47823729	3	1	731	1	0	0	0	0	1	0	0	0	2283	1087	38	1	700	1	C5AR1	19	47823729	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	3084404	47823729	11305254	66	46772											
SIGLEC5	8778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52131213	52131213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	52131213	T	A	52131213	3	1	731	1	0	0	0	0	1	0	0	0	14324	1696	59	5	804	5	SIGLEC5	19	52131213	Missense_Mutation	SNP	T	TCGA-MH-A560-01A-11D-A26P-10	4307484	52131213	6997770	67	46773											
TGIF2	60436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35219589	35219589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	35219589	C	A	35219589	3	1	731	1	0	0	0	0	1	0	0	0	15838	680	24	4	475	4	TGIF2	20	35219589	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		35219589	27805931	68	46774											
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43052875	43052876	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	C	43052876	-	C	43052875	7	5	731	1	0	1	1	0	0	0	0	0	7260	1310	46	0	1193	0	HNF4A	20	43052875	Frame_Shift_Ins	INS	-	TCGA-MH-A560-01A-11D-A26P-10	7833286	43052875	19972645	69	46775											
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24583996	24583996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	24583996	C	A	24583996	3	1	731	1	0	0	0	0	1	0	0	0	15420	855	30	4	2284	4	SUSD2	22	24583996	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		24583996	26720570	70	46776											
RFPL1	5988	broad.mit.edu	37	22	29837996	29837996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	29837996	A	G	29837996	3	3	731	1	0	0	0	0	1	0	0	0	13266	159	6	3	845	3	RFPL1	22	29837996	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	5254000	29837996	21466570	71	46777											
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	A	29885562	G	A	29885562	3	1	731	1	0	0	0	0	1	0	0	0	10321	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	47566	29885562	21419004	72	46778											
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	AGGAAG	29885623	-	AGGAAG	29885622	7	5	731	1	0	1	1	0	0	0	0	0	10321	247	9	0	2007	0	NEFH	22	29885622	In_Frame_Ins	INS	-	TCGA-MH-A560-01A-11D-A26P-10	60	29885622	21418944	73	46779											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37098581	37098581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	37098581	G	T	37098581	3	4	731	1	0	0	0	0	1	0	0	0	2559	1261	44	4	946	4	CACNG2	22	37098581	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	7212959	37098581	14205985	74	46780											
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu	37	X	34148936	34148936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	T	34148936	C	T	34148936	3	4	731	1	0	0	0	0	1	0	0	0	5576	652	23	1	919	1	FAM47A	23	34148936	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		34148936	121121624	75	46781											
TMEM164	84187	bcgsc.ca	37	X	109352336	109352336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	G	109352336	C	G	109352336	3	3	731	1	0	0	0	0	1	0	0	0	16091	913	32	4	479	4	TMEM164	23	109352336	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	75203400	109352336	45918224	76	46782											
NOL9	79707	broad.mit.edu	37	1	6610594	6610594	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	6610594	G	A	6610594	4	1	732	1	0	0	0	0	0	1	0	0	10535	1357	47	2	1674	2	NOL9	1	6610594	Nonsense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		6610594	242640027	1	46783											
RBP7	116362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	10068242	10068242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	10068242	C	G	10068242	3	3	732	1	0	0	0	0	1	0	0	0	13173	903	32	4	274	4	RBP7	1	10068242	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	3457648	10068242	239182379	2	46784											
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	14108836	14108836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	14108836	C	T	14108836	3	4	732	1	0	0	0	0	1	0	0	0	12468	527	19	1	4572	1	PRDM2	1	14108836	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	4040594	14108836	235141785	3	46785											
PLEKHM2	23207	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16054269	16054269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	16054269	T	G	16054269	3	3	732	1	0	0	0	0	1	0	0	0	12088	1783	62	5	1736	5	PLEKHM2	1	16054269	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	1945433	16054269	233196352	4	46786											
E2F2	1870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	23848337	23848337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	23848337	G	C	23848337	3	2	732	1	0	0	0	0	1	0	0	0	4869	1164	41	4	763	4	E2F2	1	23848337	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	7794068	23848337	225402284	5	46787											
CD52	1043	hgsc.bcm.edu;bcgsc.ca	37	1	26646661	26646661	+	Splice_Site	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	26646661	G	T	26646661	5	4	732	1	0	0	0	0	0	0	1	0	3024	956	33	4	60	4	CD52	1	26646661	Splice_Site	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	2798324	26646661	222603960	6	46788											
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36564106	36564106	+	Silent	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	36564106	A	G	36564106	2	3	732	1	0	0	0	0	0	0	0	1	3708	242	9	3		3	COL8A2	1	36564106	Silent	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	9917445	36564106	212686515	7	46789											
CDC20	991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43826814	43826814	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	43826814	G	C	43826814	3	2	732	1	0	0	0	0	1	0	0	0	3061	1020	36	4	1131	4	CDC20	1	43826814	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	7262708	43826814	205423807	8	46790											
GPBP1L1	60313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46124748	46124748	+	Silent	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	46124748	A	G	46124748	2	3	732	1	0	0	0	0	0	0	0	1	6603	214	8	3		3	GPBP1L1	1	46124748	Silent	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	2297934	46124748	203125873	9	46791											
AGBL4	84871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	48999847	48999847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	48999847	A	G	48999847	3	3	732	1	0	0	0	0	1	0	0	0	377	375	13	3	5	3	AGBL4	1	48999847	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	2875099	48999847	200250774	10	46792											
NFIA	4774	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	61824902	61824902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	61824902	C	A	61824902	3	1	732	1	0	0	0	0	1	0	0	0	10377	594	21	4	1070	4	NFIA	1	61824902	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	12825055	61824902	187425719	11	46793											
FNBP1L	54874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	93965136	93965136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	93965136	T	A	93965136	3	1	732	1	0	0	0	0	1	0	0	0	5973	1490	52	5	142	5	FNBP1L	1	93965136	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	32140234	93965136	155285485	12	46794											
ABCA4	24	hgsc.bcm.edu;bcgsc.ca	37	1	94522320	94522320	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	94522320	A	-	94522320	7	5	732	1	0	1	0	1	0	0	0	0	34	246	9	0	4746	0	ABCA4	1	94522320	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	557184	94522320	154728301	13	46795											
AQP10	89872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154296801	154296801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	154296801	G	T	154296801	3	4	732	1	0	0	0	0	1	0	0	0	822	1261	44	4	773	4	AQP10	1	154296801	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	59774481	154296801	94953820	14	46796											
CENPL	91687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	173772297	173772298	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	173772298	-	T	173772297	7	5	732	1	0	1	1	0	0	0	0	0	3238	449	16	0	275	0	CENPL	1	173772297	Frame_Shift_Ins	INS	-	TCGA-MH-A561-01A-11D-A26P-10	19475496	173772297	75478324	15	46797	691	2									
CENPL	91687	hgsc.bcm.edu;bcgsc.ca	37	1	173772300	173772300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	173772300	G	T	173772300	3	4	732	1	0	0	0	0	1	0	0	0	3238	1319	46	4	278	4	CENPL	1	173772300	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	3	173772300	75478321	16	46798	691	2									
RFWD2	64326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175996826	175996826	+	Splice_Site	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	175996826	T	C	175996826	5	2	732	1	0	0	0	0	0	0	1	0	13273	1536	53	3	608	3	RFWD2	1	175996826	Splice_Site	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	2224526	175996826	73253795	17	46799											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	179959644	179959645	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	179959645	GA	-	179959644	7	5	732	1	0	1	0	1	0	0	0	0	3256	1277	45	0	133	0	CEP350	1	179959644	Frame_Shift_Del	DEL	GA	TCGA-MH-A561-01A-11D-A26P-10	3962818	179959644	69290977	18	46800											
MR1	3140	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181003148	181003148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	181003148	G	T	181003148	3	4	732	1	0	0	0	0	1	0	0	0	9759	1232	43	4	7	4	MR1	1	181003148	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	1043504	181003148	68247473	19	46801											
CACNA1S	779	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201043744	201043744	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	201043744	G	C	201043744	3	2	732	1	0	0	0	0	1	0	0	0	2549	1164	41	4	3792	4	CACNA1S	1	201043744	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	20040596	201043744	48206877	20	46802											
ETNK2	55224	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	204101322	204101322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	204101322	A	T	204101322	3	4	732	1	0	0	0	0	1	0	0	0	5276	217	8	5	13	5	ETNK2	1	204101322	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	3057578	204101322	45149299	21	46803			1	159		2	2	15	N	C_A	5.969449e-05
ETNK2	55224	ucsc.edu;bcgsc.ca	37	1	204101336	204101336	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	204101336	C	T	204101336	2	4	732	1	0	0	0	0	0	0	0	1	5276	523	19	1		1	ETNK2	1	204101336	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	14	204101336	45149285	22	46804			1	159		2	2	15	N	C_A	5.969449e-05
CENPF	1063	broad.mit.edu	37	1	214816102	214816102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	214816102	C	T	214816102	3	4	732	1	0	0	0	0	1	0	0	0	3233	594	21	2	4463	2	CENPF	1	214816102	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	10714766	214816102	34434519	23	46805											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214820696	214820696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	214820696	A	T	214820696	3	4	732	1	0	0	0	0	1	0	0	0	3233	246	9	5	7829	5	CENPF	1	214820696	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	4594	214820696	34429925	24	46806											
GREB1	9687	bcgsc.ca	37	2	11767087	11767100	+	Frame_Shift_Del	DEL	GACAGAGGGATGTC	GACAGAGGGATGTC	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GACAGAGGGATGTC	GACAGAGGGATGTC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	11767100	GACAGAGGGATGTC	-	11767087	7	5	732	1	0	1	0	1	0	0	0	0	6767	956	33	0	4508	0	GREB1	2	11767087	Frame_Shift_Del	DEL	GACAGAGGGATGTC	TCGA-MH-A561-01A-11D-A26P-10		11767087	231432286	25	46807											
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48040950	48040950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	48040950	C	T	48040950	3	4	732	1	0	0	0	0	1	0	0	0	5734	855	30	2	834	2	FBXO11	2	48040950	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	36273863	48040950	195158423	26	46808											
AAK1	22848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69757189	69757189	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	69757189	G	A	69757189	2	1	732	1	0	0	0	0	0	0	0	1	16	1281	45	2		2	AAK1	2	69757189	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	21716239	69757189	173442184	27	46809											
RTKN	6242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74668862	74668862	+	Silent	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	74668862	G	T	74668862	2	4	732	1	0	0	0	0	0	0	0	1	13735	1124	39	4		4	RTKN	2	74668862	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	4911673	74668862	168530511	28	46810											
AUP1	550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74755401	74755401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	74755401	G	T	74755401	3	4	732	1	0	0	0	0	1	0	0	0	1220	1049	37	4	615	4	AUP1	2	74755401	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	86539	74755401	168443972	29	46811											
LCT	3938	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136555630	136555630	+	Silent	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	136555630	T	G	136555630	2	3	732	1	0	0	0	0	0	0	0	1	8700	1579	55	5		5	LCT	2	136555630	Silent	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	61800229	136555630	106643743	30	46812											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170136009	170136009	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	170136009	T	A	170136009	4	1	732	1	0	0	0	0	0	1	0	0	8963	1763	61	5	12801	5	LRP2	2	170136009	Nonsense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	33580379	170136009	73063364	31	46813											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171700591	171700591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	171700591	G	T	171700591	3	4	732	1	0	0	0	0	1	0	0	0	6186	1348	47	4	738	4	GAD1	2	171700591	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	1564582	171700591	71498782	32	46814											
SSFA2	6744	broad.mit.edu	37	2	182763639	182763639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	182763639	G	A	182763639	3	1	732	1	0	0	0	0	1	0	0	0	15195	1291	45	2	415	2	SSFA2	2	182763639	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	11063048	182763639	60435734	33	46815											
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190927181	190927181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	190927181	T	C	190927181	3	2	732	1	0	0	0	0	1	0	0	0	9900	1696	59	3	997	3	MSTN	2	190927181	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	8163542	190927181	52272192	34	46816											
C2orf69	205327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	200789854	200789854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	200789854	G	T	200789854	3	4	732	1	0	0	0	0	1	0	0	0	2190	1319	46	4	409	4	C2orf69	2	200789854	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	9862673	200789854	42409519	35	46817											
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234368926	234368926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	234368926	G	T	234368926	3	4	732	1	0	0	0	0	1	0	0	0	4469	1319	46	4	3034	4	DGKD	2	234368926	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	33579072	234368926	8830447	36	46818											
SCLY	51540	hgsc.bcm.edu	37	2	239006933	239006933	+	Silent	SNP	C	C	T	rs78475597		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	239006933	C	T	239006933	2	4	732	1	0	0	0	0	0	0	0	1	13920	639	23	1		1	SCLY	2	239006933	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	4638007	239006933	4192440	37	46819											
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	18390936	18390936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	18390936	T	C	18390936	3	2	732	1	0	0	0	0	1	0	0	0	13866	1551	54	3	277	3	SATB1	3	18390936	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10		18390936	179631494	38	46820											
EPM2AIP1	9852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37033483	37033483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	37033483	C	A	37033483	3	1	732	1	0	0	0	0	1	0	0	0	5186	593	21	4	741	4	EPM2AIP1	3	37033483	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	18642547	37033483	160988947	39	46821											
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38740016	38740018	+	In_Frame_Del	DEL	ACT	ACT	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	38740018	ACT	-	38740016	7	5	732	1	0	1	0	1	0	0	0	0	13925	40	2	0	1179	0	SCN10A	3	38740016	In_Frame_Del	DEL	ACT	TCGA-MH-A561-01A-11D-A26P-10	1706533	38740016	159282414	40	46822	692	2									
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38740022	38740022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	38740022	A	-	38740022	7	5	732	1	0	1	0	1	0	0	0	0	13925	233	9	0	1185	0	SCN10A	3	38740022	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	6	38740022	159282408	41	46823	692	2									
LIMD1	8994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45637412	45637412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	45637412	T	G	45637412	3	3	732	1	0	0	0	0	1	0	0	0	8805	1722	60	5	1043	5	LIMD1	3	45637412	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	6897390	45637412	152385018	42	46824											
ATRIP	84126	ucsc.edu	37	3	48488465	48488465	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	48488465	C	T	48488465	2	4	732	1	0	0	0	0	0	0	0	1	1205	738	26	2		2	ATRIP	3	48488465	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	2851053	48488465	149533965	43	46825											
GMPPB	29925	broad.mit.edu	37	3	49760823	49760823	+	Splice_Site	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	49760823	A	C	49760823	5	2	732	1	0	0	0	0	0	0	1	0	6502	173	6	5	979	5	GMPPB	3	49760823	Splice_Site	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	1272358	49760823	148261607	44	46826											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52416419	52416419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	52416419	T	C	52416419	3	2	732	1	0	0	0	0	1	0	0	0	4599	1551	54	3	8083	3	DNAH1	3	52416419	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	2655596	52416419	145606011	45	46827											
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151166796	151166796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	151166796	C	T	151166796	3	4	732	1	0	0	0	0	1	0	0	0	7604	603	21	2	6958	2	IGSF10	3	151166796	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	98750377	151166796	46855634	46	46828											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71588406	71588406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	71588406	G	T	71588406	3	4	732	1	0	0	0	0	1	0	0	0	13753	1357	47	4	480	4	RUFY3	4	71588406	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		71588406	119565870	47	46829											
GRID2	2895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	94138031	94138031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	94138031	A	G	94138031	3	3	732	1	0	0	0	0	1	0	0	0	6779	333	12	3	954	3	GRID2	4	94138031	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	22549625	94138031	97016245	48	46830											
NFKB1	4790	broad.mit.edu;bcgsc.ca	37	4	103501735	103501735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	103501735	G	T	103501735	3	4	732	1	0	0	0	0	1	0	0	0	10382	1165	41	4	804	4	NFKB1	4	103501735	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	9363704	103501735	87652541	49	46831											
KIAA1109	84162	broad.mit.edu	37	4	123185457	123185457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	123185457	G	A	123185457	3	1	732	1	0	0	0	0	1	0	0	0	8215	1377	48	2	7362	2	KIAA1109	4	123185457	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	19683722	123185457	67968819	50	46832											
FBXW7	55294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	153250883	153250883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	153250883	G	-	153250883	7	5	732	1	0	1	0	1	0	0	0	0	5776	1124	39	0	966	0	FBXW7	4	153250883	Frame_Shift_Del	DEL	G	TCGA-MH-A561-01A-11D-A26P-10	30065426	153250883	37903393	51	46833											
CENPK	64105	broad.mit.edu	37	5	64847424	64847424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	64847424	C	T	64847424	3	4	732	1	0	0	0	0	1	0	0	0	3237	835	29	2	629	2	CENPK	5	64847424	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		64847424	116067836	52	46834											
TAF7	6879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140699374	140699374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	140699374	T	C	140699374	3	2	732	1	0	0	0	0	1	0	0	0	15544	1464	51	3	815	3	TAF7	5	140699374	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	75851950	140699374	40215886	53	46835											
TFAP2A	7020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	10398689	10398689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	10398689	G	C	10398689	3	2	732	1	0	0	0	0	1	0	0	0	15799	1136	40	4	42	4	TFAP2A	6	10398689	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		10398689	160716378	54	46836											
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	17817447	17817447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	17817447	C	T	17817447	3	4	732	1	0	0	0	0	1	0	0	0	8281	507	18	2	3730	2	KIF13A	6	17817447	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	7418758	17817447	153297620	55	46837											
UHRF1BP1	54887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	34825520	34825520	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	34825520	C	T	34825520	2	4	732	1	0	0	0	0	0	0	0	1	16980	489	17	2		2	UHRF1BP1	6	34825520	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	17008073	34825520	136289547	56	46838											
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	6	57467120	57467120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	57467120	G	T	57467120	3	4	732	1	0	0	0	0	1	0	0	0	12501	1174	41	4	1099	4	PRIM2	6	57467120	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	22641600	57467120	113647947	57	46839											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75861881	75861881	+	Silent	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	75861881	T	C	75861881	2	2	732	1	0	0	0	0	0	0	0	1	3671	1799	63	3		3	COL12A1	6	75861881	Silent	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	18394761	75861881	95253186	58	46840											
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75977367	75977367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	75977367	T	A	75977367	3	1	732	1	0	0	0	0	1	0	0	0	16165	1609	56	5	774	5	TMEM30A	6	75977367	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	115486	75977367	95137700	59	46841											
MAP3K7	6885	hgsc.bcm.edu;bcgsc.ca	37	6	91226399	91226400	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	91226400	GC	-	91226399	7	5	732	1	0	1	0	1	0	0	0	0	9262	1333	46	0	182	0	MAP3K7	6	91226399	Frame_Shift_Del	DEL	GC	TCGA-MH-A561-01A-11D-A26P-10	15249032	91226399	79888668	60	46842	693	2									
MAP3K7	6885	bcgsc.ca	37	6	91226401	91226401	+	Splice_Site	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	91226401	C	T	91226401	5	4	732	1	0	0	0	0	0	0	1	0	9262	695	24	2	184	2	MAP3K7	6	91226401	Splice_Site	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	2	91226401	79888666	61	46843	693	2									
GRIK2	2898	hgsc.bcm.edu;bcgsc.ca	37	6	102513771	102513771	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	102513771	T	-	102513771	7	5	732	1	0	1	0	1	0	0	0	0	6781	1490	52	0	2776	0	GRIK2	6	102513771	Frame_Shift_Del	DEL	T	TCGA-MH-A561-01A-11D-A26P-10	11287370	102513771	68601296	62	46844											
HDAC2	3066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	114264645	114264645	+	Silent	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	114264645	A	C	114264645	2	2	732	1	0	0	0	0	0	0	0	1	7014	59	3	5		5	HDAC2	6	114264645	Silent	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	11750874	114264645	56850422	63	46845											
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	37053037	37053037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	37053037	C	T	37053037	3	4	732	1	0	0	0	0	1	0	0	0	5067	565	20	2	907	2	ELMO1	7	37053037	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		37053037	122085626	64	46846											
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104717538	104717538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	104717538	G	C	104717538	3	2	732	1	0	0	0	0	1	0	0	0	9631	991	35	4	927	4	MLL5	7	104717538	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	67664501	104717538	54421125	65	46847											
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	107732109	107732120	+	In_Frame_Del	DEL	CCTCGTAGAGAT	CCTCGTAGAGAT	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	CCTCGTAGAGAT	CCTCGTAGAGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	107732120	CCTCGTAGAGAT	-	107732109	7	5	732	1	0	1	0	1	0	0	0	0	8620	739	26	0	3706	0	LAMB4	7	107732109	In_Frame_Del	DEL	CCTCGTAGAGAT	TCGA-MH-A561-01A-11D-A26P-10	3014571	107732109	51406554	66	46848											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	rs121913245		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	116423474	T	C	116423474	3	2	732	1	0	0	0	0	1	0	0	0	9492	1464	51	3	3873	3	MET	7	116423474	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	8691365	116423474	42715189	67	46849											
GPR37	2861	hgsc.bcm.edu	37	7	124405027	124405027	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	124405027	G	A	124405027	4	1	732	1	0	0	0	0	0	1	0	0	6698	1095	38	1	1845	1	GPR37	7	124405027	Nonsense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	7981553	124405027	34733636	68	46850											
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	32616873	32616873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	32616873	A	T	32616873	3	4	732	1	0	0	0	0	1	0	0	0	10654	246	9	5	2614	5	NRG1	8	32616873	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10		32616873	113747149	69	46851											
NKX6-3	157848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	41504065	41504065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	41504065	G	T	41504065	3	4	732	1	0	0	0	0	1	0	0	0	10466	1116	39	4	100	4	NKX6-3	8	41504065	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	8887192	41504065	104859957	70	46852											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	71053580	71053580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	71053580	G	A	71053580	3	1	732	1	0	0	0	0	1	0	0	0	10236	1116	39	1	1567	1	NCOA2	8	71053580	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	29549515	71053580	75310442	71	46853											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113316994	113316994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	113316994	G	A	113316994	3	1	732	1	0	0	0	0	1	0	0	0	3948	1000	35	2	2981	2	CSMD3	8	113316994	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	42263414	113316994	33047028	72	46854											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133806739	133806739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	133806739	A	G	133806739	3	3	732	1	0	0	0	0	1	0	0	0	11839	304	11	3	173	3	PHF20L1	8	133806739	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	20489745	133806739	12557283	73	46855											
ZNF16	7564	bcgsc.ca	37	8	146156384	146156384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	146156384	C	T	146156384	3	4	732	1	0	0	0	0	1	0	0	0	17750	594	21	2	263	2	ZNF16	8	146156384	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	12349645	146156384	207638	74	46856											
AQP3	360	bcgsc.ca	37	9	33447471	33447471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	33447471	G	A	33447471	3	1	732	1	0	0	0	0	1	0	0	0	827	1115	39	1	844	1	AQP3	9	33447471	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		33447471	107765960	75	46857											
SLC28A3	64078	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86900438	86900438	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	86900438	A	T	86900438	3	4	732	1	0	0	0	0	1	0	0	0	14546	246	9	5	626	5	SLC28A3	9	86900438	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	53452967	86900438	54312993	76	46858											
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	112219466	112219466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	112219466	C	-	112219466	7	5	732	1	0	1	0	1	0	0	0	0	12802	854	30	0	2557	0	PTPN3	9	112219466	Frame_Shift_Del	DEL	C	TCGA-MH-A561-01A-11D-A26P-10	25319028	112219466	28993965	77	46859											
PALM2	114299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112705604	112705604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	112705604	A	G	112705604	3	3	732	1	0	0	0	0	1	0	0	0	11416	159	6	3	1171	3	PALM2	9	112705604	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	486138	112705604	28507827	78	46860											
FAM102A	399665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130707096	130707096	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	130707096	G	A	130707096	2	1	732	1	0	0	0	0	0	0	0	1	5386	1048	37	1		1	FAM102A	9	130707096	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	18001492	130707096	10506335	79	46861											
NUP188	23511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131749966	131749966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	131749966	T	C	131749966	3	2	732	1	0	0	0	0	1	0	0	0	10765	1493	52	3	2453	3	NUP188	9	131749966	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	1042870	131749966	9463465	80	46862											
AKR1C2	1646	broad.mit.edu	37	10	5038014	5038014	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	5038014	A	-	5038014	7	5	732	1	0	1	0	1	0	0	0	0	470	246	9	0	373	0	AKR1C2	10	5038014	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10		5038014	130496733	81	46863											
KIN	22944	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7822115	7822115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	7822115	C	G	7822115	3	3	732	1	0	0	0	0	1	0	0	0	8322	478	17	4	941	4	KIN	10	7822115	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	2784101	7822115	127712632	82	46864											
SORBS1	10580	broad.mit.edu;bcgsc.ca	37	10	97170380	97170388	+	Splice_Site	DEL	CCTCTCTTA	CCTCTCTTA	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	CCTCTCTTA	CCTCTCTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	97170388	CCTCTCTTA	-	97170380	8	5	732	1	0	1	0	1	0	0	1	0	14940	754	26	0		0	SORBS1	10	97170380	Splice_Site	DEL	CCTCTCTTA	TCGA-MH-A561-01A-11D-A26P-10	89348265	97170380	38364367	83	46865											
MTG1	92170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135209749	135209750	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	GC	135209750	-	GC	135209749	7	5	732	1	0	1	1	0	0	0	0	0	9933	1821	63	0	270	0	MTG1	10	135209749	Frame_Shift_Ins	INS	-	TCGA-MH-A561-01A-11D-A26P-10	38039369	135209749	324998	84	46866											
INS	3630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2181135	2181135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	2181135	G	T	2181135	3	4	732	1	0	0	0	0	1	0	0	0	7769	1386	48	4	56	4	INS	11	2181135	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		2181135	132825381	85	46867											
PDE3B	5140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	14808189	14808189	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	14808189	A	T	14808189	3	4	732	1	0	0	0	0	1	0	0	0	11645	11	1	5	1246	5	PDE3B	11	14808189	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	12627054	14808189	120198327	86	46868											
CHRM1	1128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62677207	62677207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	62677207	G	A	62677207	3	1	732	1	0	0	0	0	1	0	0	0	3378	1174	41	2	20	2	CHRM1	11	62677207	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	47869018	62677207	72329309	87	46869											
CHRM1	1128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62677510	62677510	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	62677510	A	T	62677510	3	4	732	1	0	0	0	0	1	0	0	0	3378	72	3	5	323	5	CHRM1	11	62677510	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	303	62677510	72329006	88	46870											
OVOL1	5017	broad.mit.edu	37	11	65562811	65562812	+	Nonstop_Mutation	DNP	GA	GA	TT	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	TT	65562812	GA	TT	65562811	4	4	732	1	0	0	0	0	0	0	0	0	11333	1285	45	4	817	4	OVOL1	11	65562811	Nonstop_Mutation	DNP	GA	TCGA-MH-A561-01A-11D-A26P-10	2885301	65562811	69443705	89	46871											
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	85409045	85409045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	85409045	A	C	85409045	3	2	732	1	0	0	0	0	1	0	0	0	15495	272	10	5	386	5	SYTL2	11	85409045	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	19846234	85409045	49597471	90	46872											
ANKRD49	54851	broad.mit.edu	37	11	94231479	94231479	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	94231479	C	T	94231479	2	4	732	1	0	0	0	0	0	0	0	1	675	816	29	2		2	ANKRD49	11	94231479	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	8822434	94231479	40775037	91	46873											
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	134063948	134063948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	134063948	C	T	134063948	3	4	732	1	0	0	0	0	1	0	0	0	10213	652	23	1	2793	1	NCAPD3	11	134063948	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	39832469	134063948	942568	92	46874											
YARS2	51067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	32908454	32908454	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	32908454	G	-	32908454	7	5	732	1	0	1	0	1	0	0	0	0	17480	991	35	0	1098	0	YARS2	12	32908454	Frame_Shift_Del	DEL	G	TCGA-MH-A561-01A-11D-A26P-10		32908454	100943441	93	46875											
GALNT6	11226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51758021	51758021	+	Silent	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	51758021	G	C	51758021	2	2	732	1	0	0	0	0	0	0	0	1	6224	1103	39	4		4	GALNT6	12	51758021	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	18849567	51758021	82093874	94	46876											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120569801	120569801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	120569801	C	T	120569801	3	4	732	1	0	0	0	0	1	0	0	0	6306	623	22	2	692	2	GCN1L1	12	120569801	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	68811780	120569801	13282094	95	46877											
PSPC1	55269	broad.mit.edu;bcgsc.ca	37	13	20277500	20277500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	20277500	G	A	20277500	3	1	732	1	0	0	0	0	1	0	0	0	12726	1333	46	2	188	2	PSPC1	13	20277500	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		20277500	94892378	96	46878											
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113526110	113526110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	113526110	T	C	113526110	3	2	732	1	0	0	0	0	1	0	0	0	1119	1522	53	3	3155	3	ATP11A	13	113526110	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	93248610	113526110	1643768	97	46879											
OR11H12	440153	broad.mit.edu;bcgsc.ca	37	14	19378076	19378076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	19378076	A	G	19378076	3	3	732	1	0	0	0	0	1	0	0	0	10934	381	14	3	485	3	OR11H12	14	19378076	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10		19378076	87971464	98	46880											
CDH24	64403	broad.mit.edu;bcgsc.ca	37	14	23517629	23517629	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	23517629	C	-	23517629	7	5	732	1	0	1	0	1	0	0	0	0	3111	864	30	0	443	0	CDH24	14	23517629	Frame_Shift_Del	DEL	C	TCGA-MH-A561-01A-11D-A26P-10	4139553	23517629	83831911	99	46881											
HOMEZ	57594	hgsc.bcm.edu	37	14	23744820	23744820	+	Missense_Mutation	SNP	A	A	T	rs200818825		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	23744820	A	T	23744820	3	4	732	1	0	0	0	0	1	0	0	0	7288	214	8	5	39	5	HOMEZ	14	23744820	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	227191	23744820	83604720	100	46882											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67291218	67291218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	67291218	A	C	67291218	3	2	732	1	0	0	0	0	1	0	0	0	6617	11	1	5	242	5	GPHN	14	67291218	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	43546398	67291218	40058322	101	46883											
PPIP5K1	9677	hgsc.bcm.edu	37	15	43863609	43863609	+	Splice_Site	DEL	C	C	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	43863609	C	-	43863609	8	5	732	1	0	1	0	1	0	0	1	0	12342	521	18	0	1485	0	PPIP5K1	15	43863609	Splice_Site	DEL	C	TCGA-MH-A561-01A-11D-A26P-10		43863609	58667783	102	46884											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62211634	62211634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	62211634	T	C	62211634	3	2	732	1	0	0	0	0	1	0	0	0	17203	1638	57	3	3909	3	VPS13C	15	62211634	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	18348025	62211634	40319758	103	46885											
ADAMTSL3	57188	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	84592737	84592737	+	Missense_Mutation	SNP	G	G	A	rs148020587	alternate_allele	TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	84592737	G	A	84592737	3	1	732	1	0	0	0	0	1	0	0	0	276	1145	40	1	2131	1	ADAMTSL3	15	84592737	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	22381103	84592737	17938655	104	46886											
C15orf32	145858	broad.mit.edu	37	15	93016234	93016234	+	Silent	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	C	93016234	T	C	93016234	2	2	732	1	0	0	0	0	0	0	0	1	1792	1490	52	3		3	C15orf32	15	93016234	Silent	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	8423497	93016234	9515158	105	46887											
RPL3L	6123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1995508	1995508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	1995508	C	A	1995508	3	1	732	1	0	0	0	0	1	0	0	0	13607	739	26	4	72	4	RPL3L	16	1995508	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		1995508	88359245	106	46888											
SCNN1B	6338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23360139	23360139	+	Silent	SNP	C	C	G	rs151171880	alternate_allele	TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	23360139	C	G	23360139	2	3	732	1	0	0	0	0	0	0	0	1	13941	668	24	4		4	SCNN1B	16	23360139	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	21364631	23360139	66994614	107	46889											
RBBP6	5930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24581493	24581493	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	24581493	A	T	24581493	3	4	732	1	0	0	0	0	1	0	0	0	13116	304	11	5	3602	5	RBBP6	16	24581493	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	1221354	24581493	65773260	108	46890											
MYLK3	91807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	46781755	46781755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	46781755	C	A	46781755	3	1	732	1	0	0	0	0	1	0	0	0	10065	594	21	4	2160	4	MYLK3	16	46781755	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	22200262	46781755	43572998	109	46891											
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67910858	67910858	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	67910858	T	G	67910858	3	3	732	1	0	0	0	0	1	0	0	0	4910	1821	63	5	448	5	EDC4	16	67910858	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	21129103	67910858	22443895	110	46892											
AARS	16	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70301662	70301662	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	70301662	G	A	70301662	2	1	732	1	0	0	0	0	0	0	0	1	19	1280	45	2		2	AARS	16	70301662	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	2390804	70301662	20053091	111	46893											
HYDIN	54768	bcgsc.ca	37	16	71127828	71127828	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	71127828	G	A	71127828	2	1	732	1	0	0	0	0	0	0	0	1	7474	1164	41	2		2	HYDIN	16	71127828	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	826166	71127828	19226925	112	46894											
USP10	9100	bcgsc.ca	37	16	84797744	84797744	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	84797744	G	A	84797744	2	1	732	1	0	0	0	0	0	0	0	1	17053	991	35	2		2	USP10	16	84797744	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	13669916	84797744	5557009	113	46895											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	18057182	18057182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	18057182	C	G	18057182	3	3	732	1	0	0	0	0	1	0	0	0	10070	739	26	4	8222	4	MYO15A	17	18057182	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		18057182	63138028	114	46896											
KLHL11	55175	broad.mit.edu	37	17	40021223	40021223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	40021223	C	T	40021223	3	4	732	1	0	0	0	0	1	0	0	0	8374	768	27	1	1733	1	KLHL11	17	40021223	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	21964041	40021223	41173987	115	46897											
ITGA2B	3674	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	42449792	42449792	+	Splice_Site	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	42449792	C	T	42449792	5	4	732	1	0	0	0	0	0	0	1	0	7883	695	24	2	63	2	ITGA2B	17	42449792	Splice_Site	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	2428569	42449792	38745418	116	46898											
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42744196	42744196	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	42744196	A	T	42744196	3	4	732	1	0	0	0	0	1	0	0	0	1853	130	5	5	935	5	C17orf104	17	42744196	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	294404	42744196	38451014	117	46899											
SPAG9	9043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	49067112	49067112	+	Silent	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	49067112	G	T	49067112	2	4	732	1	0	0	0	0	0	0	0	1	14998	929	33	4		4	SPAG9	17	49067112	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	6322916	49067112	32128098	118	46900											
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79095314	79095314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	79095314	G	T	79095314	3	4	732	1	0	0	0	0	1	0	0	0	26	1232	43	4	1718	4	AATK	17	79095314	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	30028202	79095314	2099896	119	46901											
MALT1	10892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	56400802	56400802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	56400802	A	G	56400802	3	3	732	1	0	0	0	0	1	0	0	0	9209	247	9	3	1438	3	MALT1	18	56400802	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10		56400802	21676446	120	46902											
CHAF1A	10036	broad.mit.edu	37	19	4433329	4433329	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	4433329	G	A	4433329	2	1	732	1	0	0	0	0	0	0	0	1	3313	1074	38	1		1	CHAF1A	19	4433329	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		4433329	54695654	121	46903											
SPC24	147841	broad.mit.edu	37	19	11259779	11259779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	11259779	G	T	11259779	3	4	732	1	0	0	0	0	1	0	0	0	15033	1203	42	4	313	4	SPC24	19	11259779	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	6826450	11259779	47869204	122	46904											
SYDE1	85360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15220001	15220001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	15220001	A	T	15220001	3	4	732	1	0	0	0	0	1	0	0	0	15447	72	3	5	229	5	SYDE1	19	15220001	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	3960222	15220001	43908982	123	46905											
PDCD5	9141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	33077794	33077794	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	33077794	A	-	33077794	7	5	732	1	0	1	0	1	0	0	0	0	11629	363	13	0	307	0	PDCD5	19	33077794	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	17857793	33077794	26051189	124	46906											
ZNF792	126375	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35450211	35450211	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	35450211	T	-	35450211	7	5	732	1	0	1	0	1	0	0	0	0	18176	1725	60	0	1354	0	ZNF792	19	35450211	Frame_Shift_Del	DEL	T	TCGA-MH-A561-01A-11D-A26P-10	2372417	35450211	23678772	125	46907											
ZNF256	10172	hgsc.bcm.edu;bcgsc.ca	37	19	58452565	58452565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	58452565	A	-	58452565	7	5	732	1	0	1	0	1	0	0	0	0	17811	446	16	0	276	0	ZNF256	19	58452565	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	23002354	58452565	676418	126	46908											
PLTP	5360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44539886	44539886	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	44539886	C	T	44539886	2	4	732	1	0	0	0	0	0	0	0	1	12121	796	28	2		2	PLTP	20	44539886	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		44539886	18485634	127	46909											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	57782069	57782069	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	-	57782069	A	-	57782069	7	5	732	1	0	1	0	1	0	0	0	0	18197	247	9	0	3995	0	ZNF831	20	57782069	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	13242183	57782069	5243451	128	46910											
SAMSN1	64092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15889252	15889252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	15889252	T	A	15889252	3	1	732	1	0	0	0	0	1	0	0	0	13843	1606	56	5	905	5	SAMSN1	21	15889252	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10		15889252	32240643	129	46911											
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45825794	45825794	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	45825794	C	T	45825794	2	4	732	1	0	0	0	0	0	0	0	1	16598	845	30	2		2	TRPM2	21	45825794	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	29936542	45825794	2304101	130	46912											
ADORA2A	135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24836558	24836558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	T	24836558	G	T	24836558	3	4	732	1	0	0	0	0	1	0	0	0	327	1348	47	4	346	4	ADORA2A	22	24836558	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		24836558	26468008	131	46913											
CBX6	23466	broad.mit.edu;bcgsc.ca	37	22	39262330	39262330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	39262330	T	G	39262330	3	3	732	1	0	0	0	0	1	0	0	0	2724	1580	55	5	119	5	CBX6	22	39262330	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	14425772	39262330	12042236	132	46914											
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53440302	53440302	+	Silent	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	53440302	C	G	53440302	2	3	732	1	0	0	0	0	0	0	0	1	14794	755	27	4		4	SMC1A	23	53440302	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		53440302	101830258	133	46915											
LONRF3	79836	broad.mit.edu;bcgsc.ca	37	X	118151559	118151559	+	Missense_Mutation	SNP	G	G	A	rs143959775		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	A	118151559	G	A	118151559	3	1	732	1	0	0	0	0	1	0	0	0	8903	1058	37	1	2228	1	LONRF3	23	118151559	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	64711257	118151559	37119001	134	46916											
UPF3B	65109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118985467	118985467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	G	118985467	C	G	118985467	3	3	732	1	0	0	0	0	1	0	0	0	17018	826	29	4	1126	4	UPF3B	23	118985467	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	833908	118985467	36285093	135	46917											
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40724033	40724033	+	Silent	SNP	G	G	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	40724033	G	C	40724033	2	2	733	1	0	0	0	0	0	0	0	1	17710	1364	48	4		4	ZMPSTE24	1	40724033	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		40724033	208526588	1	46918											
GSTM4	2948	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	110201466	110201466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	110201466	C	A	110201466	3	1	733	1	0	0	0	0	1	0	0	0	6847	565	20	4	413	4	GSTM4	1	110201466	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	69477433	110201466	139049155	2	46919											
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117120184	117120184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	117120184	C	G	117120184	3	3	733	1	0	0	0	0	1	0	0	0	7608	521	18	4	253	4	IGSF3	1	117120184	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	6918718	117120184	132130437	3	46920											
PBXIP1	57326	broad.mit.edu	37	1	154920116	154920116	+	Splice_Site	SNP	A	A	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	154920116	A	C	154920116	5	2	733	1	0	0	0	0	0	0	1	0	11503	405	14	5	1471	5	PBXIP1	1	154920116	Splice_Site	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	37799932	154920116	94330505	4	46921											
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156824054	156824054	+	Missense_Mutation	SNP	G	G	A	rs140386495		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	156824054	G	A	156824054	3	1	733	1	0	0	0	0	1	0	0	0	7781	1058	37	1	3849	1	INSRR	1	156824054	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	1903938	156824054	92426567	5	46922											
KLHDC9	126823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161069269	161069269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	161069269	G	A	161069269	3	1	733	1	0	0	0	0	1	0	0	0	8371	1348	47	2	667	2	KLHDC9	1	161069269	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	4245215	161069269	88181352	6	46923											
IARS2	55699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220311360	220311360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	220311360	A	G	220311360	3	3	733	1	0	0	0	0	1	0	0	0	7481	101	4	3	2216	3	IARS2	1	220311360	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	59242091	220311360	28939261	7	46924											
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229771821	229771821	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	229771821	G	A	229771821	2	1	733	1	0	0	0	0	0	0	0	1	17037	962	34	2		2	URB2	1	229771821	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	9460461	229771821	19478800	8	46925											
HNRNPU	3192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245018785	245018785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	245018785	A	G	245018785	3	3	733	1	0	0	0	0	1	0	0	0	7280	362	13	3	196	3	HNRNPU	1	245018785	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	15246964	245018785	4231836	9	46926											
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	17692220	17692220	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	-	17692220	T	-	17692220	7	5	733	1	0	1	0	1	0	0	0	0	13000	1522	53	0	152	0	RAD51AP2	2	17692220	Frame_Shift_Del	DEL	T	TCGA-MH-A562-01A-11D-A26P-10		17692220	225507153	10	46927											
OSR1	130497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	19552164	19552164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	19552164	G	A	19552164	3	1	733	1	0	0	0	0	1	0	0	0	11300	1290	45	2	131	2	OSR1	2	19552164	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	1859944	19552164	223647209	11	46928											
PNO1	56902	broad.mit.edu	37	2	68385203	68385203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	68385203	G	A	68385203	3	1	733	1	0	0	0	0	1	0	0	0	12168	1087	38	1	139	1	PNO1	2	68385203	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	48833039	68385203	174814170	12	46929											
MPHOSPH10	10199	broad.mit.edu;bcgsc.ca	37	2	71368372	71368378	+	Frame_Shift_Del	DEL	ATGTAGT	ATGTAGT	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	ATGTAGT	ATGTAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	-	71368378	ATGTAGT	-	71368372	7	5	733	1	0	1	0	1	0	0	0	0	9732	333	12	0	1345	0	MPHOSPH10	2	71368372	Frame_Shift_Del	DEL	ATGTAGT	TCGA-MH-A562-01A-11D-A26P-10	2983169	71368372	171831001	13	46930											
IP6K2	51447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48728866	48728866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	48728866	A	G	48728866	3	3	733	1	0	0	0	0	1	0	0	0	7796	391	14	3	814	3	IP6K2	3	48728866	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		48728866	149293564	14	46931											
LAMB2	3913	broad.mit.edu	37	3	49158999	49158999	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	49158999	C	T	49158999	2	4	733	1	0	0	0	0	0	0	0	1	8618	564	20	2		2	LAMB2	3	49158999	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	430133	49158999	148863431	15	46932											
OR5H2	79310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98001882	98001882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	98001882	A	C	98001882	3	2	733	1	0	0	0	0	1	0	0	0	11169	333	12	5	153	5	OR5H2	3	98001882	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	48842883	98001882	100020548	16	46933											
TPRA1	131601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127292425	127292425	+	Missense_Mutation	SNP	G	G	C	rs201165800	alternate_allele	TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	127292425	G	C	127292425	3	2	733	1	0	0	0	0	1	0	0	0	16429	1232	43	4	64	4	TPRA1	3	127292425	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	29290543	127292425	70730005	17	46934											
MUC4	4585	bcgsc.ca	37	3	195509322	195509322	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	195509322	G	A	195509322	2	1	733	1	0	0	0	0	0	0	0	1	9985	1277	45	2		2	MUC4	3	195509322	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	68216897	195509322	2513108	18	46935											
TNK2	10188	broad.mit.edu;bcgsc.ca	37	3	195615329	195615329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	195615329	T	C	195615329	3	2	733	1	0	0	0	0	1	0	0	0	16330	1551	54	3	3090	3	TNK2	3	195615329	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	106007	195615329	2407101	19	46936											
SLC26A1	10861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	982690	982690	+	Silent	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	982690	A	G	982690	2	3	733	1	0	0	0	0	0	0	0	1	14527	156	6	3		3	SLC26A1	4	982690	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		982690	190171586	20	46937											
ADD1	118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2883755	2883755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	2883755	C	A	2883755	3	1	733	1	0	0	0	0	1	0	0	0	304	797	28	4	332	4	ADD1	4	2883755	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	1901065	2883755	188270521	21	46938											
SLC34A2	10568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25676246	25676246	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	25676246	C	G	25676246	3	3	733	1	0	0	0	0	1	0	0	0	14581	565	20	4	1495	4	SLC34A2	4	25676246	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	22792491	25676246	165478030	22	46939											
CWH43	80157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	49032879	49032879	+	Silent	SNP	T	T	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	49032879	T	G	49032879	2	3	733	1	0	0	0	0	0	0	0	1	4075	1509	53	5		5	CWH43	4	49032879	Silent	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	23356633	49032879	142121397	23	46940											
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	82061797	82061797	+	Silent	SNP	A	A	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	82061797	A	T	82061797	2	4	733	1	0	0	0	0	0	0	0	1	12533	59	3	5		5	PRKG2	4	82061797	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	33028918	82061797	109092479	24	46941											
DSPP	1834	bcgsc.ca	37	4	88537018	88537018	+	Silent	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	88537018	T	C	88537018	2	2	733	1	0	0	0	0	0	0	0	1	4784	1403	49	3		3	DSPP	4	88537018	Silent	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	6475221	88537018	102617258	25	46942	694	2									
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	88537027	C	A	88537027	3	1	733	1	0	0	0	0	1	0	0	0	4784	477	17	4	3227	4	DSPP	4	88537027	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	9	88537027	102617249	26	46943	694	2									
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187627969	187627969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	187627969	C	T	187627969	3	4	733	1	0	0	0	0	1	0	0	0	5696	913	32	2	10857	2	FAT1	4	187627969	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	99090942	187627969	3526307	27	46944											
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	54635905	54635905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	54635905	A	G	54635905	3	3	733	1	0	0	0	0	1	0	0	0	14373	304	11	3	605	3	SKIV2L2	5	54635905	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		54635905	126279355	28	46945											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82815685	82815685	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	82815685	G	A	82815685	2	1	733	1	0	0	0	0	0	0	0	1	17150	1339	47	2		2	VCAN	5	82815685	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	28179780	82815685	98099575	29	46946											
VCAN	1462	broad.mit.edu	37	5	82836607	82836608	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	-	82836608	AG	-	82836607	7	5	733	1	0	1	0	1	0	0	0	0	17150	175	7	0	7811	0	VCAN	5	82836607	Frame_Shift_Del	DEL	AG	TCGA-MH-A562-01A-11D-A26P-10	20922	82836607	98078653	30	46947											
CHD1	1105	ucsc.edu;bcgsc.ca	37	5	98238644	98238644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	98238644	C	T	98238644	3	4	733	1	0	0	0	0	1	0	0	0	3325	884	31	1	4863	1	CHD1	5	98238644	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	15402037	98238644	82676616	31	46948											
BTNL8	79908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180338541	180338541	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	180338541	C	T	180338541	2	4	733	1	0	0	0	0	0	0	0	1	1569	535	19	1		1	BTNL8	5	180338541	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	82099897	180338541	576719	32	46949											
PHACTR1	221692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	13283687	13283687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	13283687	G	C	13283687	3	2	733	1	0	0	0	0	1	0	0	0	11816	1175	41	4	1585	4	PHACTR1	6	13283687	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		13283687	157831380	33	46950											
ZFP57	346171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29643249	29643249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	29643249	T	C	29643249	3	2	733	1	0	0	0	0	1	0	0	0	17663	1464	51	3	1352	3	ZFP57	6	29643249	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	16359562	29643249	141471818	34	46951											
STXBP5	134957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	147648298	147648298	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	147648298	G	C	147648298	3	2	733	1	0	0	0	0	1	0	0	0	15368	1290	45	4	2036	4	STXBP5	6	147648298	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	118005049	147648298	23466769	35	46952											
GRB10	2887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	50742288	50742288	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	50742288	G	A	50742288	2	1	733	1	0	0	0	0	0	0	0	1	6763	987	35	2		2	GRB10	7	50742288	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		50742288	108396375	36	46953											
WDR91	29062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134893687	134893687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	134893687	C	A	134893687	3	1	733	1	0	0	0	0	1	0	0	0	17350	739	26	4	1928	4	WDR91	7	134893687	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	84151399	134893687	24244976	37	46954											
CSMD1	64478	bcgsc.ca	37	8	2832127	2832127	+	Silent	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	2832127	T	C	2832127	2	2	733	1	0	0	0	0	0	0	0	1	3946	1567	55	3		3	CSMD1	8	2832127	Silent	SNP	T	TCGA-MH-A562-01A-11D-A26P-10		2832127	143531895	38	46955											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	77616434	77616434	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	77616434	G	A	77616434	2	1	733	1	0	0	0	0	0	0	0	1	17647	1161	41	2		2	ZFHX4	8	77616434	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	74784307	77616434	68747588	39	46956											
CD274	29126	broad.mit.edu	37	9	5457410	5457410	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	5457410	G	A	5457410	2	1	733	1	0	0	0	0	0	0	0	1	2993	1277	45	2		2	CD274	9	5457410	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		5457410	135756021	40	46957											
FOXD4L5	653427	broad.mit.edu	37	9	70177822	70177822	+	Silent	SNP	T	T	C	rs2921291		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	70177822	T	C	70177822	2	2	733	1	0	0	0	0	0	0	0	1	6009	1683	59	3		3	FOXD4L5	9	70177822	Silent	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	64720412	70177822	71035609	41	46958											
NRP1	8829	ucsc.edu;bcgsc.ca	37	10	33543118	33543118	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	33543118	G	A	33543118	2	1	733	1	0	0	0	0	0	0	0	1	10667	1281	45	2		2	NRP1	10	33543118	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		33543118	101991629	42	46959											
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88419072	88419072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	88419072	G	A	88419072	3	1	733	1	0	0	0	0	1	0	0	0	10889	1232	43	2	702	2	OPN4	10	88419072	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	54875954	88419072	47115675	43	46960											
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu	37	11	30034138	30034138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	30034138	G	A	30034138	3	1	733	1	0	0	0	0	1	0	0	0	8012	1086	38	1	1877	1	KCNA4	11	30034138	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		30034138	104972378	44	46961											
API5	8539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	43350300	43350300	+	Silent	SNP	A	A	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	43350300	A	T	43350300	2	4	733	1	0	0	0	0	0	0	0	1	773	291	11	5		5	API5	11	43350300	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	13316162	43350300	91656216	45	46962											
NRXN2	9379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64428553	64428553	+	Silent	SNP	A	A	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	64428553	A	T	64428553	2	4	733	1	0	0	0	0	0	0	0	1	10673	242	9	5		5	NRXN2	11	64428553	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	21078253	64428553	70577963	46	46963											
MCAM	4162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	119185945	119185945	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	119185945	C	T	119185945	2	4	733	1	0	0	0	0	0	0	0	1	9375	755	27	1		1	MCAM	11	119185945	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	54757392	119185945	15820571	47	46964											
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57861257	57861257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	57861257	C	A	57861257	3	1	733	1	0	0	0	0	1	0	0	0	6444	595	21	4	1084	4	GLI1	12	57861257	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10		57861257	75990638	48	46965											
PAWR	5074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	80083606	80083606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	80083606	G	A	80083606	3	1	733	1	0	0	0	0	1	0	0	0	11484	1059	37	1	627	1	PAWR	12	80083606	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	22222349	80083606	53768289	49	46966											
P2RX2	22953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	133197702	133197702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	133197702	C	T	133197702	3	4	733	1	0	0	0	0	1	0	0	0	11347	838	29	2	920	2	P2RX2	12	133197702	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	53114096	133197702	654193	50	46967											
POU4F1	5457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	79175599	79175599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	79175599	C	A	79175599	3	1	733	1	0	0	0	0	1	0	0	0	12285	710	25	4	52	4	POU4F1	13	79175599	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10		79175599	35994279	51	46968											
CTAGE5	4253	broad.mit.edu	37	14	39815176	39815179	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	CTGT	CTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	-	39815179	CTGT	-	39815176	7	5	733	1	0	1	0	1	0	0	0	0	3996	564	20	0	2013	0	CTAGE5	14	39815176	Frame_Shift_Del	DEL	CTGT	TCGA-MH-A562-01A-11D-A26P-10		39815176	67534364	52	46969											
DCAF5	8816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	69521317	69521317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	69521317	T	C	69521317	3	2	733	1	0	0	0	0	1	0	0	0	4275	1725	60	3	746	3	DCAF5	14	69521317	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	29706141	69521317	37828223	53	46970											
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65684246	65684246	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	65684246	C	G	65684246	3	3	733	1	0	0	0	0	1	0	0	0	7576	680	24	4	1592	4	IGDCC4	15	65684246	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10		65684246	36847146	54	46971											
SLC24A1	9187	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65942809	65942809	+	Silent	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	65942809	A	G	65942809	2	3	733	1	0	0	0	0	0	0	0	1	14478	291	11	3		3	SLC24A1	15	65942809	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	258563	65942809	36588583	55	46972											
CARHSP1	23589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	8953055	8953055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	8953055	G	A	8953055	3	1	733	1	0	0	0	0	1	0	0	0	2655	1232	43	2	324	2	CARHSP1	16	8953055	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		8953055	81401698	56	46973											
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27374134	27374134	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	27374134	G	A	27374134	2	1	733	1	0	0	0	0	0	0	0	1	7705	1074	38	1		1	IL4R	16	27374134	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	18421079	27374134	62980619	57	46974											
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30970101	30970101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	30970101	T	C	30970101	3	2	733	1	0	0	0	0	1	0	0	0	14143	1696	59	3	51	3	SETD1A	16	30970101	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	3595967	30970101	59384652	58	46975											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	51171349	51171349	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	51171349	A	C	51171349	3	2	733	1	0	0	0	0	1	0	0	0	13823	43	2	5	329	5	SALL1	16	51171349	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	20201248	51171349	39183404	59	46976											
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67761787	67761787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	67761787	G	T	67761787	3	4	733	1	0	0	0	0	1	0	0	0	13039	1000	35	4	387	4	RANBP10	16	67761787	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	16590438	67761787	22592966	60	46977											
CDK10	8558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89760632	89760632	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	89760632	C	T	89760632	2	4	733	1	0	0	0	0	0	0	0	1	3127	874	31	1		1	CDK10	16	89760632	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	21998845	89760632	594121	61	46978											
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4877742	4877742	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	4877742	T	G	4877742	3	3	733	1	0	0	0	0	1	0	0	0	2616	1435	50	5	1752	5	CAMTA2	17	4877742	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10		4877742	76317468	62	46979											
SLC5A10	125206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18880267	18880267	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	18880267	T	A	18880267	3	1	733	1	0	0	0	0	1	0	0	0	14675	1435	50	5	981	5	SLC5A10	17	18880267	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	14002525	18880267	62314943	63	46980											
LGALS9B	284194	broad.mit.edu	37	17	20355185	20355185	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	20355185	G	A	20355185	2	1	733	1	0	0	0	0	0	0	0	1	8756	1281	45	2		2	LGALS9B	17	20355185	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	1474918	20355185	60840025	64	46981											
EZH1	2145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40880917	40880920	+	Frame_Shift_Del	DEL	AGTA	AGTA	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	AGTA	AGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	-	40880920	AGTA	-	40880917	7	5	733	1	0	1	0	1	0	0	0	0	5335	188	7	0	2276	0	EZH1	17	40880917	Frame_Shift_Del	DEL	AGTA	TCGA-MH-A562-01A-11D-A26P-10	20525732	40880917	40314293	65	46982											
ASB16	92591	broad.mit.edu	37	17	42255640	42255640	+	Missense_Mutation	SNP	C	C	G	rs192236945	alternate_allele	TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	42255640	C	G	42255640	3	3	733	1	0	0	0	0	1	0	0	0	1020	739	26	4	1262	4	ASB16	17	42255640	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	1374723	42255640	38939570	66	46983											
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45916860	45916860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	45916860	G	A	45916860	3	1	733	1	0	0	0	0	1	0	0	0	13952	1087	38	1	809	1	SCRN2	17	45916860	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	3661220	45916860	35278350	67	46984											
NXPH3	11248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47656051	47656051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	47656051	C	T	47656051	3	4	733	1	0	0	0	0	1	0	0	0	10799	759	27	1	154	1	NXPH3	17	47656051	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	1739191	47656051	33539159	68	46985											
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62045582	62045582	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	62045582	C	T	62045582	2	4	733	1	0	0	0	0	0	0	0	1	13933	564	20	2		2	SCN4A	17	62045582	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	14389531	62045582	19149628	69	46986	695	2									
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62045585	62045585	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	62045585	C	T	62045585	2	4	733	1	0	0	0	0	0	0	0	1	13933	912	32	2		2	SCN4A	17	62045585	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	3	62045585	19149625	70	46987	695	2									
DENND1C	79958	hgsc.bcm.edu	37	19	6475944	6475944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	6475944	G	A	6475944	3	1	733	1	0	0	0	0	1	0	0	0	4430	1261	44	2	1774	2	DENND1C	19	6475944	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		6475944	52653039	71	46988											
CYP4F22	126410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15651480	15651480	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	15651480	C	T	15651480	2	4	733	1	0	0	0	0	0	0	0	1	4191	581	21	2		2	CYP4F22	19	15651480	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	9175536	15651480	43477503	72	46989											
NCAN	1463	broad.mit.edu	37	19	19338433	19338433	+	Silent	SNP	A	A	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	C	19338433	A	C	19338433	2	2	733	1	0	0	0	0	0	0	0	1	10211	146	6	5		5	NCAN	19	19338433	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	3686953	19338433	39790550	73	46990											
MLL4	8085	ucsc.edu;bcgsc.ca	37	19	36210764	36210764	+	Missense_Mutation	SNP	C	C	A	rs60207923	alternate_allele	TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	36210764	C	A	36210764	3	1	733	1	0	0	0	0	1	0	0	0	9630	507	18	4	525	4	MLL4	19	36210764	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	16872331	36210764	22918219	74	46991											
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39226166	39226166	+	Silent	SNP	G	G	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	39226166	G	T	39226166	2	4	733	1	0	0	0	0	0	0	0	1	2627	1280	45	4		4	CAPN12	19	39226166	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	3015402	39226166	19902817	75	46992											
PSG5	5673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43689069	43689069	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	43689069	C	A	43689069	4	1	733	1	0	0	0	0	0	1	0	0	12668	922	32	4	728	4	PSG5	19	43689069	Nonsense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	4462903	43689069	15439914	76	46993											
MYPOP	339344	broad.mit.edu	37	19	46394285	46394285	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	-	46394285	G	-	46394285	7	5	733	1	0	1	0	1	0	0	0	0	10106	1357	47	0	407	0	MYPOP	19	46394285	Frame_Shift_Del	DEL	G	TCGA-MH-A562-01A-11D-A26P-10	2705216	46394285	12734698	77	46994											
LILRB3	11025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54721052	54721052	+	Silent	SNP	G	G	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	T	54721052	G	T	54721052	2	4	733	1	0	0	0	0	0	0	0	1	8799	1219	43	4		4	LILRB3	19	54721052	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	8326767	54721052	4407931	78	46995											
BCL2L1	598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30253881	30253881	+	Silent	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	30253881	A	G	30253881	2	3	733	1	0	0	0	0	0	0	0	1	1367	127	5	3		3	BCL2L1	20	30253881	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		30253881	32771639	79	46996											
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	28305272	28305272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	28305272	C	G	28305272	3	3	733	1	0	0	0	0	1	0	0	0	269	478	17	4	1027	4	ADAMTS5	21	28305272	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10		28305272	19824623	80	46997											
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26761491	26761491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	26761491	G	A	26761491	3	1	733	1	0	0	0	0	1	0	0	0	14156	1174	41	2	2803	2	SEZ6L	22	26761491	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		26761491	24543075	81	46998											
PTCHD1	139411	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	23411325	23411325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	G	23411325	A	G	23411325	3	3	733	1	0	0	0	0	1	0	0	0	12742	449	16	3	1700	3	PTCHD1	23	23411325	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		23411325	131859235	82	46999											
PLS3	5358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	114880464	114880465	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	A	114880465	-	A	114880464	7	5	733	1	0	1	1	0	0	0	0	0	12115	1741	61	0	1377	0	PLS3	23	114880464	Frame_Shift_Ins	INS	-	TCGA-MH-A562-01A-11D-A26P-10	91469139	114880464	40390096	83	47000											
GNB1	2782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1720557	1720557	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	1720557	A	C	1720557	3	2	734	1	0	0	0	0	1	0	0	0	6522	304	11	5	179	5	GNB1	1	1720557	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		1720557	247530064	1	47001											
HES3	390992	hgsc.bcm.edu	37	1	6305201	6305201	+	Missense_Mutation	SNP	A	A	C	rs188463518		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	6305201	A	C	6305201	3	2	734	1	0	0	0	0	1	0	0	0	7074	40	2	5	205	5	HES3	1	6305201	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	4584644	6305201	242945420	2	47002											
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15855696	15855696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	15855696	A	C	15855696	3	2	734	1	0	0	0	0	1	0	0	0	4637	301	11	5	98	5	DNAJC16	1	15855696	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	9550495	15855696	233394925	3	47003											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19500887	19500887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	19500887	G	T	19500887	3	4	734	1	0	0	0	0	1	0	0	0	16916	1020	36	4	12983	4	UBR4	1	19500887	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	3645191	19500887	229749734	4	47004											
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22073615	22073615	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	22073615	A	G	22073615	2	3	734	1	0	0	0	0	0	0	0	1	17091	446	16	3		3	USP48	1	22073615	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	2572728	22073615	227177006	5	47005											
MECR	51102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	29520638	29520638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	29520638	G	C	29520638	3	2	734	1	0	0	0	0	1	0	0	0	9431	971	34	4	107	4	MECR	1	29520638	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	7447023	29520638	219729983	6	47006											
SMAP2	64744	ucsc.edu;bcgsc.ca	37	1	40839876	40839876	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	40839876	T	A	40839876	4	1	734	1	0	0	0	0	0	1	0	0	14780	1702	59	5	86	5	SMAP2	1	40839876	Nonsense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	11319238	40839876	208410745	7	47007											
PTPRF	5792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44083552	44083552	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	44083552	C	T	44083552	2	4	734	1	0	0	0	0	0	0	0	1	12814	813	29	2		2	PTPRF	1	44083552	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	3243676	44083552	205167069	8	47008											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62271194	62271194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	62271194	A	G	62271194	3	3	734	1	0	0	0	0	1	0	0	0	7738	101	4	3	1670	3	INADL	1	62271194	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	18187642	62271194	186979427	9	47009											
CCDC18	343099	broad.mit.edu;bcgsc.ca	37	1	93705010	93705043	+	In_Frame_Del	DEL	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	-	93705043	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	-	93705010	7	5	734	1	0	1	0	1	0	0	0	0	2796	1522	53	0	3179	0	CCDC18	1	93705010	In_Frame_Del	DEL	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	TCGA-P4-A5E6-01A-11D-A28G-10	31433816	93705010	155545611	10	47010											
PRMT6	55170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	107599742	107599742	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	107599742	C	T	107599742	2	4	734	1	0	0	0	0	0	0	0	1	12550	842	30	2		2	PRMT6	1	107599742	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	13894732	107599742	141650879	11	47011											
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152384603	152384603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	152384603	A	G	152384603	3	3	734	1	0	0	0	0	1	0	0	0	3894	304	11	3	1388	3	CRNN	1	152384603	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	44784861	152384603	96866018	12	47012											
INTS3	65123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153735733	153735733	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	153735733	A	T	153735733	3	4	734	1	0	0	0	0	1	0	0	0	7786	159	6	5	1723	5	INTS3	1	153735733	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	1351130	153735733	95514888	13	47013											
DENND4B	9909	hgsc.bcm.edu	37	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	153907287	G	C	153907287	3	2	734	1	0	0	0	0	1	0	0	0	4436	1328	46	4	1812	4	DENND4B	1	153907287	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	171554	153907287	95343334	14	47014	696	2									
DENND4B	9909	broad.mit.edu	37	1	153907294	153907294	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	153907294	C	T	153907294	2	4	734	1	0	0	0	0	0	0	0	1	4436	796	28	2		2	DENND4B	1	153907294	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	7	153907294	95343327	15	47015	696	2									
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155903553	155903553	+	Silent	SNP	C	C	G	rs147323254		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	155903553	C	G	155903553	2	3	734	1	0	0	0	0	0	0	0	1	8206	610	22	4		4	KIAA0907	1	155903553	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	1996259	155903553	93347068	16	47016											
HDGF	3068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156713547	156713547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	156713547	C	T	156713547	3	4	734	1	0	0	0	0	1	0	0	0	7025	652	23	1	117	1	HDGF	1	156713547	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	809994	156713547	92537074	17	47017											
IPO9	55705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201842054	201842054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	201842054	A	C	201842054	3	2	734	1	0	0	0	0	1	0	0	0	7806	333	12	5	2753	5	IPO9	1	201842054	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	45128507	201842054	47408567	18	47018											
YOD1	55432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207222409	207222409	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	-	207222409	C	-	207222409	7	5	734	1	0	1	0	1	0	0	0	0	17500	864	30	0	47	0	YOD1	1	207222409	Frame_Shift_Del	DEL	C	TCGA-P4-A5E6-01A-11D-A28G-10	5380355	207222409	42028212	19	47019											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214813548	214813548	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	214813548	A	T	214813548	4	4	734	1	0	0	0	0	0	1	0	0	3233	247	9	5	1909	5	CENPF	1	214813548	Nonsense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	7591139	214813548	34437073	20	47020											
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	220154162	220154162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	220154162	G	C	220154162	3	2	734	1	0	0	0	0	1	0	0	0	5193	1029	36	4	1079	4	EPRS	1	220154162	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	5340614	220154162	29096459	21	47021											
TLR5	7100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	223285316	223285316	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	-	223285316	C	-	223285316	7	5	734	1	0	1	0	1	0	0	0	0	15966	565	20	0	1522	0	TLR5	1	223285316	Frame_Shift_Del	DEL	C	TCGA-P4-A5E6-01A-11D-A28G-10	3131154	223285316	25965305	22	47022											
C1orf65	164127	hgsc.bcm.edu	37	1	223567036	223567036	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	223567036	C	T	223567036	2	4	734	1	0	0	0	0	0	0	0	1	2057	755	27	1		1	C1orf65	1	223567036	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	281720	223567036	25683585	23	47023											
ITPKB	3707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	226924770	226924784	+	In_Frame_Del	DEL	CTTCCTCTTGGCCTC	CTTCCTCTTGGCCTC	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	CTTCCTCTTGGCCTC	CTTCCTCTTGGCCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	-	226924784	CTTCCTCTTGGCCTC	-	226924770	7	5	734	1	0	1	0	1	0	0	0	0	7925	796	28	0	2478	0	ITPKB	1	226924770	In_Frame_Del	DEL	CTTCCTCTTGGCCTC	TCGA-P4-A5E6-01A-11D-A28G-10	3357734	226924770	22325851	24	47024											
NLRP3	114548	ucsc.edu;bcgsc.ca	37	1	247588675	247588675	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	247588675	C	T	247588675	4	4	734	1	0	0	0	0	0	1	0	0	10485	711	25	2	1940	2	NLRP3	1	247588675	Nonsense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	20663905	247588675	1661946	25	47025											
OR2M5	127059	broad.mit.edu;bcgsc.ca	37	1	248309355	248309355	+	Silent	SNP	G	G	A	rs201158893		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	248309355	G	A	248309355	2	1	734	1	0	0	0	0	0	0	0	1	11020	1165	41	2		2	OR2M5	1	248309355	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	720680	248309355	941266	26	47026											
MXD1	4084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	70165384	70165384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	70165384	C	G	70165384	3	3	734	1	0	0	0	0	1	0	0	0	10006	711	25	4	656	4	MXD1	2	70165384	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		70165384	173033989	27	47027											
RGPD4	285190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	108488583	108488583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	108488583	A	G	108488583	3	3	734	1	0	0	0	0	1	0	0	0	13301	247	9	3	4201	3	RGPD4	2	108488583	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	38323199	108488583	134710790	28	47028											
SP5	389058	hgsc.bcm.edu	37	2	171572792	171572792	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	171572792	G	A	171572792	2	1	734	1	0	0	0	0	0	0	0	1	14980	1103	39	1		1	SP5	2	171572792	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	63084209	171572792	71626581	29	47029											
FZD7	8324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202900342	202900342	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	202900342	C	G	202900342	4	3	734	1	0	0	0	0	0	1	0	0	6142	518	18	4	974	4	FZD7	2	202900342	Nonsense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	31327550	202900342	40299031	30	47030											
FAM117B	150864	hgsc.bcm.edu	37	2	203500481	203500481	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	203500481	A	C	203500481	2	2	734	1	0	0	0	0	0	0	0	1	5414	295	11	5		5	FAM117B	2	203500481	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	600139	203500481	39698892	31	47031											
RPE	6120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	210881324	210881324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	210881324	G	A	210881324	3	1	734	1	0	0	0	0	1	0	0	0	13557	1232	43	2	508	2	RPE	2	210881324	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	7380843	210881324	32318049	32	47032											
CUL3	8452	hgsc.bcm.edu;bcgsc.ca	37	2	225449678	225449678	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	-	225449678	G	-	225449678	7	5	734	1	0	1	0	1	0	0	0	0	4058	1086	38	0	2321	0	CUL3	2	225449678	Frame_Shift_Del	DEL	G	TCGA-P4-A5E6-01A-11D-A28G-10	14568354	225449678	17749695	33	47033	697	2									
CUL3	8452	bcgsc.ca	37	2	225449679	225449679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	225449679	C	T	225449679	3	4	734	1	0	0	0	0	1	0	0	0	4058	710	25	2	2322	2	CUL3	2	225449679	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	1	225449679	17749694	34	47034	697	2									
BHLHE40	8553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	5024970	5024970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	5024970	A	C	5024970	3	2	734	1	0	0	0	0	1	0	0	0	1423	101	4	5	850	5	BHLHE40	3	5024970	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		5024970	192997460	35	47035											
XPC	7508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	14188804	14188804	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	14188804	G	C	14188804	3	2	734	1	0	0	0	0	1	0	0	0	17453	1058	37	4	240	4	XPC	3	14188804	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	9163834	14188804	183833626	36	47036											
DAG1	1605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49568609	49568609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	49568609	T	C	49568609	3	2	734	1	0	0	0	0	1	0	0	0	4227	1609	56	3	671	3	DAG1	3	49568609	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	35379805	49568609	148453821	37	47037											
MAPKAPK3	7867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50685441	50685441	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	50685441	C	G	50685441	2	3	734	1	0	0	0	0	0	0	0	1	9297	697	25	4		4	MAPKAPK3	3	50685441	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	1116832	50685441	147336989	38	47038											
MAGI1	9223	hgsc.bcm.edu	37	3	65425597	65425597	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	65425597	C	T	65425597	2	4	734	1	0	0	0	0	0	0	0	1	9197	796	28	2		2	MAGI1	3	65425597	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	14740156	65425597	132596833	39	47039											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108174686	108174687	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	108174687	-	T	108174686	7	5	734	1	0	1	1	0	0	0	0	0	10041	681	24	0	3709	0	MYH15	3	108174686	Frame_Shift_Ins	INS	-	TCGA-P4-A5E6-01A-11D-A28G-10	42749089	108174686	89847744	40	47040											
ABHD10	55347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111710242	111710242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	111710242	A	C	111710242	3	2	734	1	0	0	0	0	1	0	0	0	74	333	12	5	613	5	ABHD10	3	111710242	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	3535556	111710242	86312188	41	47041											
GP9	2815	broad.mit.edu	37	3	128780901	128780901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	128780901	G	T	128780901	3	4	734	1	0	0	0	0	1	0	0	0	6592	1203	42	4	321	4	GP9	3	128780901	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	17070659	128780901	69241529	42	47042											
ARRDC3	57561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90669948	90669948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	90669948	A	C	90669948	3	2	734	1	0	0	0	0	1	0	0	0	984	72	3	5	240	5	ARRDC3	5	90669948	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		90669948	90245312	43	47043											
PAM	5066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	102285295	102285295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	102285295	C	T	102285295	3	4	734	1	0	0	0	0	1	0	0	0	11419	739	26	2	732	2	PAM	5	102285295	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	11615347	102285295	78629965	44	47044											
PCDHGB6	56100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140788348	140788348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	140788348	G	T	140788348	3	4	734	1	0	0	0	0	1	0	0	0	11574	1020	36	4	581	4	PCDHGB6	5	140788348	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	38503053	140788348	40126912	45	47045											
SPINK1	6690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147207646	147207646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	147207646	G	A	147207646	3	1	734	1	0	0	0	0	1	0	0	0	15069	1232	43	2	114	2	SPINK1	5	147207646	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	6419298	147207646	33707614	46	47046											
GABRB2	2561	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	160886718	160886718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	160886718	T	A	160886718	3	1	734	1	0	0	0	0	1	0	0	0	6174	1783	62	5	1196	5	GABRB2	5	160886718	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	13679072	160886718	20028542	47	47047											
FAM65B	9750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24843494	24843494	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	24843494	C	G	24843494	3	3	734	1	0	0	0	0	1	0	0	0	5607	922	32	4	1740	4	FAM65B	6	24843494	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		24843494	146271573	48	47048											
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30459405	30459405	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	30459405	T	C	30459405	2	2	734	1	0	0	0	0	0	0	0	1	7217	1567	55	3		3	HLA-E	6	30459405	Silent	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	5615911	30459405	140655662	49	47049											
C6orf10	10665	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32261299	32261299	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	32261299	T	G	32261299	3	3	734	1	0	0	0	0	1	0	0	0	2319	1609	56	5	544	5	C6orf10	6	32261299	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	1801894	32261299	138853768	50	47050											
PRICKLE4	29964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41751890	41751890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	41751890	G	A	41751890	3	1	734	1	0	0	0	0	1	0	0	0	12499	1232	43	2	160	2	PRICKLE4	6	41751890	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	9490591	41751890	129363177	51	47051											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90578032	90578032	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	90578032	G	C	90578032	3	2	734	1	0	0	0	0	1	0	0	0	2680	1377	48	4	5049	4	CASP8AP2	6	90578032	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	48826142	90578032	80537035	52	47052											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117203548	117203548	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	-	117203548	C	-	117203548	7	5	734	1	0	1	0	1	0	0	0	0	13280	855	30	0	537	0	RFX6	6	117203548	Frame_Shift_Del	DEL	C	TCGA-P4-A5E6-01A-11D-A28G-10	26625516	117203548	53911519	53	47053											
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26224503	26224503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	26224503	G	T	26224503	3	4	734	1	0	0	0	0	1	0	0	0	10376	1377	48	4	1199	4	NFE2L3	7	26224503	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10		26224503	132914160	54	47054											
NAMPT	10135	broad.mit.edu	37	7	105903928	105903928	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	105903928	T	G	105903928	3	3	734	1	0	0	0	0	1	0	0	0	10156	1606	56	5	616	5	NAMPT	7	105903928	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	79679425	105903928	53234735	55	47055											
FLNC	2318	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128494117	128494117	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	128494117	G	C	128494117	3	2	734	1	0	0	0	0	1	0	0	0	5942	1175	41	4	6732	4	FLNC	7	128494117	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	22590189	128494117	30644546	56	47056											
HR	55806	hgsc.bcm.edu	37	8	21978269	21978269	+	Missense_Mutation	SNP	C	C	T	rs114871775		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	21978269	C	T	21978269	3	4	734	1	0	0	0	0	1	0	0	0	7354	536	19	1	1035	1	HR	8	21978269	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		21978269	124385753	57	47057											
SDC2	6383	ucsc.edu	37	8	97605816	97605816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	97605816	T	A	97605816	3	1	734	1	0	0	0	0	1	0	0	0	13965	1551	54	5	175	5	SDC2	8	97605816	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	75627547	97605816	48758206	58	47058											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121357692	121357692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	121357692	C	T	121357692	3	4	734	1	0	0	0	0	1	0	0	0	3673	681	24	2	5141	2	COL14A1	8	121357692	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	23751876	121357692	25006330	59	47059											
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	77435298	77435298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	77435298	C	G	77435298	3	3	734	1	0	0	0	0	1	0	0	0	16602	912	32	4	5136	4	TRPM6	9	77435298	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		77435298	63778133	60	47060											
GOLM1	51280	ucsc.edu	37	9	88692380	88692380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	88692380	A	G	88692380	3	3	734	1	0	0	0	0	1	0	0	0	6574	275	10	3	981	3	GOLM1	9	88692380	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	11257082	88692380	52521051	61	47061											
TEX10	54881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	103109141	103109141	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	103109141	C	G	103109141	3	3	734	1	0	0	0	0	1	0	0	0	15784	565	20	4	2113	4	TEX10	9	103109141	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	14416761	103109141	38104290	62	47062											
EGFL7	51162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139564703	139564703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	139564703	G	C	139564703	3	2	734	1	0	0	0	0	1	0	0	0	4966	1241	43	4	510	4	EGFL7	9	139564703	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	36455562	139564703	1648728	63	47063											
TRAF2	7186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139794876	139794876	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	139794876	C	G	139794876	2	3	734	1	0	0	0	0	0	0	0	1	16450	668	24	4		4	TRAF2	9	139794876	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	230173	139794876	1418555	64	47064											
VIM	7431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17278345	17278345	+	Silent	SNP	T	T	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	17278345	T	G	17278345	2	3	734	1	0	0	0	0	0	0	0	1	17178	1770	62	5		5	VIM	10	17278345	Silent	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10		17278345	118256402	65	47065											
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	24873742	24873742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	24873742	C	T	24873742	3	4	734	1	0	0	0	0	1	0	0	0	871	652	23	1	404	1	ARHGAP21	10	24873742	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	7595397	24873742	110661005	66	47066											
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	48388918	48388918	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	48388918	G	C	48388918	3	2	734	1	0	0	0	0	1	0	0	0	13170	1203	42	4	1799	4	RBP3	10	48388918	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	23515176	48388918	87145829	67	47067											
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50681040	50681040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	50681040	C	T	50681040	3	4	734	1	0	0	0	0	1	0	0	0	5219	652	23	1	1765	1	ERCC6	10	50681040	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	2292122	50681040	84853707	68	47068											
CSTF2T	23283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	53458361	53458361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	53458361	C	T	53458361	3	4	734	1	0	0	0	0	1	0	0	0	3987	661	23	1	905	1	CSTF2T	10	53458361	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	2777321	53458361	82076386	69	47069											
COL13A1	1305	hgsc.bcm.edu	37	10	71562297	71562297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	71562297	C	T	71562297	3	4	734	1	0	0	0	0	1	0	0	0	3672	739	26	2	120	2	COL13A1	10	71562297	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	18103936	71562297	63972450	70	47070											
ZMIZ1	57178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	81037038	81037038	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	81037038	C	G	81037038	2	3	734	1	0	0	0	0	0	0	0	1	17708	610	22	4		4	ZMIZ1	10	81037038	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	9474741	81037038	54497709	71	47071											
RNLS	55328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	90342858	90342858	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	90342858	A	C	90342858	2	2	734	1	0	0	0	0	0	0	0	1	13518	117	5	5		5	RNLS	10	90342858	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	9305820	90342858	45191889	72	47072											
NOC3L	64318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96121495	96121495	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	96121495	T	C	96121495	2	2	734	1	0	0	0	0	0	0	0	1	10521	1722	60	3		3	NOC3L	10	96121495	Silent	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	5778637	96121495	39413252	73	47073											
GPAM	57678	ucsc.edu;bcgsc.ca	37	10	113920407	113920407	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	113920407	A	T	113920407	3	4	734	1	0	0	0	0	1	0	0	0	6595	420	15	5	800	5	GPAM	10	113920407	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	17798912	113920407	21614340	74	47074											
PDZD8	118987	hgsc.bcm.edu	37	10	119134718	119134718	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	119134718	G	T	119134718	2	4	734	1	0	0	0	0	0	0	0	1	11712	1164	41	4		4	PDZD8	10	119134718	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	5214311	119134718	16400029	75	47075											
MUC2	4583	broad.mit.edu	37	11	1093099	1093099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	1093099	C	A	1093099	3	1	734	1	0	0	0	0	1	0	0	0	9982	623	22	4	5036	4	MUC2	11	1093099	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		1093099	133913417	76	47076											
MUC2	4583	broad.mit.edu	37	11	1093376	1093376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	1093376	C	T	1093376	3	4	734	1	0	0	0	0	1	0	0	0	9982	594	21	2	5313	2	MUC2	11	1093376	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	277	1093376	133913140	77	47077											
ZFP91	80829	hgsc.bcm.edu	37	11	58346868	58346868	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	58346868	G	A	58346868	2	1	734	1	0	0	0	0	0	0	0	1	17667	1103	39	1		1	ZFP91	11	58346868	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	57253492	58346868	76659648	78	47078											
ATG2A	23130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64681557	64681557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	64681557	C	A	64681557	3	1	734	1	0	0	0	0	1	0	0	0	1093	912	32	4	5489	4	ATG2A	11	64681557	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	6334689	64681557	70324959	79	47079											
FOLR2	2350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71931920	71931920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	71931920	C	A	71931920	3	1	734	1	0	0	0	0	1	0	0	0	5989	855	30	4	163	4	FOLR2	11	71931920	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	7250363	71931920	63074596	80	47080											
BARX2	8538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	129321185	129321185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	129321185	T	A	129321185	3	1	734	1	0	0	0	0	1	0	0	0	1316	1551	54	5	742	5	BARX2	11	129321185	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	57389265	129321185	5685331	81	47081											
GLS2	27165	ucsc.edu	37	12	56865334	56865334	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	56865334	A	G	56865334	2	3	734	1	0	0	0	0	0	0	0	1	6471	175	7	3		3	GLS2	12	56865334	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		56865334	76986561	82	47082											
SHMT2	6472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57624649	57624649	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	57624649	C	G	57624649	3	3	734	1	0	0	0	0	1	0	0	0	14299	595	21	4	103	4	SHMT2	12	57624649	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	759315	57624649	76227246	83	47083											
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	94763803	94763804	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	94763804	-	T	94763803	7	5	734	1	0	1	1	0	0	0	0	0	2815	1029	36	0	1198	0	CCDC41	12	94763803	Frame_Shift_Ins	INS	-	TCGA-P4-A5E6-01A-11D-A28G-10	37139154	94763803	39088092	84	47084											
TPCN1	53373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113715129	113715129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	113715129	A	C	113715129	3	2	734	1	0	0	0	0	1	0	0	0	16407	391	14	5	1406	5	TPCN1	12	113715129	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	18951326	113715129	20136766	85	47085											
CLYBL	171425	hgsc.bcm.edu	37	13	100258999	100258999	+	Missense_Mutation	SNP	C	C	T	rs200020595		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	100258999	C	T	100258999	3	4	734	1	0	0	0	0	1	0	0	0	3575	768	27	1	52	1	CLYBL	13	100258999	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		100258999	14910879	86	47086											
MYH7	4625	ucsc.edu;bcgsc.ca	37	14	23898982	23898982	+	Splice_Site	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	23898982	A	G	23898982	5	3	734	1	0	0	0	0	0	0	1	0	10046	173	6	3	4783	3	MYH7	14	23898982	Splice_Site	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		23898982	83450558	87	47087											
LGALS3	3958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55604955	55604955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	55604955	C	T	55604955	3	4	734	1	0	0	0	0	1	0	0	0	8750	855	30	2	217	2	LGALS3	14	55604955	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	31705973	55604955	51744585	88	47088											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68268851	68268851	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	68268851	G	T	68268851	2	4	734	1	0	0	0	0	0	0	0	1	17680	929	33	4		4	ZFYVE26	14	68268851	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	12663896	68268851	39080689	89	47089											
GPR65	8477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	88478074	88478074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	88478074	G	A	88478074	3	1	734	1	0	0	0	0	1	0	0	0	6713	1059	37	1	885	1	GPR65	14	88478074	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	20209223	88478074	18871466	90	47090											
PPP4R4	57718	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94733352	94733352	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	94733352	T	A	94733352	3	1	734	1	0	0	0	0	1	0	0	0	12415	1696	59	5	2598	5	PPP4R4	14	94733352	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	6255278	94733352	12616188	91	47091											
OTUD7A	161725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31818596	31818596	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	31818596	G	A	31818596	2	1	734	1	0	0	0	0	0	0	0	1	11325	1078	38	1		1	OTUD7A	15	31818596	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10		31818596	70712796	92	47092											
C15orf53	400359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	38988831	38988831	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	38988831	A	C	38988831	3	2	734	1	0	0	0	0	1	0	0	0	1803	304	11	5	25	5	C15orf53	15	38988831	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	7170235	38988831	63542561	93	47093											
DUOX1	53905	broad.mit.edu	37	15	45427438	45427438	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	45427438	A	G	45427438	2	3	734	1	0	0	0	0	0	0	0	1	4802	243	9	3		3	DUOX1	15	45427438	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	6438607	45427438	57103954	94	47094											
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu	37	15	52680095	52680096	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	CA	52680096	AC	CA	52680095	3	2	734	1	0	0	0	0	1	0	0	0	10085	157	6	5	3996	5	MYO5A	15	52680095	Missense_Mutation	DNP	AC	TCGA-P4-A5E6-01A-11D-A28G-10	7252657	52680095	49851297	95	47095											
SLCO3A1	28232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	92647568	92647568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	92647568	C	A	92647568	3	1	734	1	0	0	0	0	1	0	0	0	14741	912	32	4	819	4	SLCO3A1	15	92647568	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	39967473	92647568	9883824	96	47096											
WDR90	197335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	707787	707787	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	707787	C	T	707787	2	4	734	1	0	0	0	0	0	0	0	1	17349	639	23	1		1	WDR90	16	707787	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		707787	89646966	97	47097											
VASN	114990	hgsc.bcm.edu	37	16	4432672	4432672	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	4432672	T	C	4432672	2	2	734	1	0	0	0	0	0	0	0	1	17139	1702	59	3		3	VASN	16	4432672	Silent	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	3724885	4432672	85922081	98	47098											
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31414951	31414951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	31414951	G	A	31414951	3	1	734	1	0	0	0	0	1	0	0	0	7891	1203	42	2	715	2	ITGAD	16	31414951	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	26982279	31414951	58939802	99	47099											
ARMC5	79798	hgsc.bcm.edu	37	16	31475859	31475859	+	Silent	SNP	C	C	T	rs115663676		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	31475859	C	T	31475859	2	4	734	1	0	0	0	0	0	0	0	1	954	697	25	2		2	ARMC5	16	31475859	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	60908	31475859	58878894	100	47100											
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	47622955	47622955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	47622955	G	A	47622955	3	1	734	1	0	0	0	0	1	0	0	0	11852	1232	43	2	1107	2	PHKB	16	47622955	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	16147096	47622955	42731798	101	47101											
RBL2	5934	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53514563	53514563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	53514563	G	A	53514563	3	1	734	1	0	0	0	0	1	0	0	0	13123	1087	38	1	3044	1	RBL2	16	53514563	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	5891608	53514563	36840190	102	47102											
DBNDD1	79007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90075270	90075270	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	90075270	T	A	90075270	3	1	734	1	0	0	0	0	1	0	0	0	4255	1696	59	5	243	5	DBNDD1	16	90075270	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	36560707	90075270	279483	103	47103											
ZNF594	84622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5086862	5086862	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	5086862	C	G	5086862	3	3	734	1	0	0	0	0	1	0	0	0	18036	912	32	4	1737	4	ZNF594	17	5086862	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		5086862	76108348	104	47104											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26971163	26971163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	26971163	C	A	26971163	3	1	734	1	0	0	0	0	1	0	0	0	8161	796	28	4	6748	4	KIAA0100	17	26971163	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	21884301	26971163	54224047	105	47105											
NUFIP2	57532	hgsc.bcm.edu;bcgsc.ca	37	17	27614566	27614566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	27614566	A	G	27614566	3	3	734	1	0	0	0	0	1	0	0	0	10756	101	4	3	1653	3	NUFIP2	17	27614566	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	643403	27614566	53580644	106	47106											
KLHL11	55175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40011371	40011371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	40011371	T	C	40011371	3	2	734	1	0	0	0	0	1	0	0	0	8374	1530	53	3	1382	3	KLHL11	17	40011371	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	12396805	40011371	41183839	107	47107											
KAT2A	2648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40269761	40269761	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	40269761	G	C	40269761	3	2	734	1	0	0	0	0	1	0	0	0	7988	1232	43	4	1190	4	KAT2A	17	40269761	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	258390	40269761	40925449	108	47108											
CELF5	60680	hgsc.bcm.edu	37	19	3285978	3285978	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	3285978	A	T	3285978	3	4	734	1	0	0	0	0	1	0	0	0	3221	188	7	5	1179	5	CELF5	19	3285978	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		3285978	55843005	109	47109											
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19758062	19758062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	19758062	T	C	19758062	3	2	734	1	0	0	0	0	1	0	0	0	1123	1493	52	3	653	3	ATP13A1	19	19758062	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	16472084	19758062	39370921	110	47110											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35506763	35506763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	35506763	C	T	35506763	3	4	734	1	0	0	0	0	1	0	0	0	6754	652	23	1	1147	1	GRAMD1A	19	35506763	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	15748701	35506763	23622220	111	47111											
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46305454	46305454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	G	46305454	C	G	46305454	3	3	734	1	0	0	0	0	1	0	0	0	13720	912	32	4	443	4	RSPH6A	19	46305454	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	10798691	46305454	12823529	112	47112											
GLTSCR1	29998	hgsc.bcm.edu	37	19	48183660	48183660	+	Silent	SNP	G	G	A	rs145963832		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	48183660	G	A	48183660	2	1	734	1	0	0	0	0	0	0	0	1	6481	1364	48	2		2	GLTSCR1	19	48183660	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	1878206	48183660	10945323	113	47113											
GLTSCR1	29998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	48183987	48183987	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	48183987	G	T	48183987	2	4	734	1	0	0	0	0	0	0	0	1	6481	1335	47	4		4	GLTSCR1	19	48183987	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	327	48183987	10944996	114	47114											
SBK2	646643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56047489	56047489	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	C	56047489	A	C	56047489	3	2	734	1	0	0	0	0	1	0	0	0	13874	159	6	5	884	5	SBK2	19	56047489	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	7863502	56047489	3081494	115	47115											
VSX1	30813	hgsc.bcm.edu	37	20	25062342	25062342	+	Missense_Mutation	SNP	G	G	T	rs6050307		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	25062342	G	T	25062342	3	4	734	1	0	0	0	0	1	0	0	0	17243	1116	39	4	819	4	VSX1	20	25062342	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10		25062342	37963178	116	47116											
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62378613	62378613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	T	62378613	G	T	62378613	3	4	734	1	0	0	0	0	1	0	0	0	17559	1194	42	4	333	4	ZBTB46	20	62378613	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	37316271	62378613	646907	117	47117											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu	37	22	18300505	18300505	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	-	18300505	T	-	18300505	7	5	734	1	0	1	0	1	0	0	0	0	9578	1580	55	0	1114	0	MICAL3	22	18300505	Frame_Shift_Del	DEL	T	TCGA-P4-A5E6-01A-11D-A28G-10		18300505	33004061	118	47118											
RRP7A	27341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42912080	42912080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	A	42912080	C	A	42912080	3	1	734	1	0	0	0	0	1	0	0	0	13702	796	28	4	583	4	RRP7A	22	42912080	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	24611575	42912080	8392486	119	47119											
KIF1B	23095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10328310	10328310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	10328310	T	C	10328310	3	2	735	1	0	0	0	0	1	0	0	0	8291	1783	62	3	731	3	KIF1B	1	10328310	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		10328310	238922311	1	47120											
VPS13D	55187	bcgsc.ca	37	1	12378145	12378145	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	12378145	T	-	12378145	7	5	735	1	0	1	0	1	0	0	0	0	17204	1551	54	0	7283	0	VPS13D	1	12378145	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	2049835	12378145	236872476	2	47121											
HMGCL	3155	hgsc.bcm.edu	37	1	24151846	24151846	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	24151846	A	G	24151846	2	3	735	1	0	0	0	0	0	0	0	1	7236	202	7	3		3	HMGCL	1	24151846	Silent	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	11773701	24151846	225098775	3	47122											
SYNC	81493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33161106	33161106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	33161106	T	G	33161106	3	3	735	1	0	0	0	0	1	0	0	0	15455	1464	51	5	933	5	SYNC	1	33161106	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	9009260	33161106	216089515	4	47123											
ZC3H12A	80149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	37949045	37949045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	37949045	A	T	37949045	3	4	735	1	0	0	0	0	1	0	0	0	17573	179	7	5	1651	5	ZC3H12A	1	37949045	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	4787939	37949045	211301576	5	47124											
KTI12	112970	hgsc.bcm.edu	37	1	52499078	52499078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	52499078	A	G	52499078	3	3	735	1	0	0	0	0	1	0	0	0	8591	159	6	3	712	3	KTI12	1	52499078	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	14550033	52499078	196751543	6	47125											
DHCR24	1718	broad.mit.edu	37	1	55317995	55317995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	55317995	A	C	55317995	3	2	735	1	0	0	0	0	1	0	0	0	4478	304	11	5	92	5	DHCR24	1	55317995	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	2818917	55317995	193932626	7	47126											
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115256491	115256491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	115256491	T	A	115256491	3	1	735	1	0	0	0	0	1	0	0	0	10647	1667	58	5	361	5	NRAS	1	115256491	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	59938496	115256491	133994130	8	47127											
GON4L	54856	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155723012	155723012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	155723012	C	G	155723012	3	3	735	1	0	0	0	0	1	0	0	0	6579	855	30	4	913	4	GON4L	1	155723012	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	40466521	155723012	93527609	9	47128											
C1orf61	10485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156386616	156386616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	156386616	C	A	156386616	3	1	735	1	0	0	0	0	1	0	0	0	2054	855	30	4	474	4	C1orf61	1	156386616	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	663604	156386616	92864005	10	47129											
DDR2	4921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	162729664	162729664	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	162729664	G	A	162729664	2	1	735	1	0	0	0	0	0	0	0	1	4339	1364	48	2		2	DDR2	1	162729664	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	6343048	162729664	86520957	11	47130											
C1orf114	57821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169390718	169390718	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	169390718	A	-	169390718	7	5	735	1	0	1	0	1	0	0	0	0	1989	407	15	0	591	0	C1orf114	1	169390718	Frame_Shift_Del	DEL	A	TCGA-P4-A5E7-01A-31D-A28G-10	6661054	169390718	79859903	12	47131											
TTC27	55622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33002960	33002960	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	33002960	G	A	33002960	4	1	735	1	0	0	0	0	0	1	0	0	16707	1270	44	2	1746	2	TTC27	2	33002960	Nonsense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		33002960	210196413	13	47132											
FAM98A	25940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33813426	33813426	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	33813426	T	C	33813426	2	2	735	1	0	0	0	0	0	0	0	1	5663	1490	52	3		3	FAM98A	2	33813426	Silent	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	810466	33813426	209385947	14	47133											
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69409663	69409663	+	Silent	SNP	T	T	G	rs138963459		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	69409663	T	G	69409663	2	3	735	1	0	0	0	0	0	0	0	1	711	1509	53	5		5	ANTXR1	2	69409663	Silent	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	35596237	69409663	173789710	15	47134											
TTC31	64427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74718487	74718487	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	74718487	G	A	74718487	2	1	735	1	0	0	0	0	0	0	0	1	16712	1020	36	2		2	TTC31	2	74718487	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	5308824	74718487	168480886	16	47135											
SUCLG1	8802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	84652539	84652539	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	84652539	C	T	84652539	2	4	735	1	0	0	0	0	0	0	0	1	15376	695	24	2		2	SUCLG1	2	84652539	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	9934052	84652539	158546834	17	47136											
KCNIP3	30818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95976175	95976175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	95976175	A	G	95976175	3	3	735	1	0	0	0	0	1	0	0	0	8048	449	16	3	94	3	KCNIP3	2	95976175	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	11323636	95976175	147223198	18	47137	698	2									
KCNIP3	30818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95976177	95976177	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	95976177	C	T	95976177	2	4	735	1	0	0	0	0	0	0	0	1	8048	816	29	2		2	KCNIP3	2	95976177	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	2	95976177	147223196	19	47138	698	2									
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	108604763	108604763	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	108604763	T	A	108604763	4	1	735	1	0	0	0	0	0	1	0	0	14683	1764	61	5	154	5	SLC5A7	2	108604763	Nonsense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	12628586	108604763	134594610	20	47139											
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu	37	2	135988115	135988115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	135988115	C	T	135988115	3	4	735	1	0	0	0	0	1	0	0	0	18236	478	17	2	1353	2	ZRANB3	2	135988115	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	27383352	135988115	107211258	21	47140											
SSB	6741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170667495	170667495	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	170667495	A	C	170667495	3	2	735	1	0	0	0	0	1	0	0	0	15190	246	9	5	972	5	SSB	2	170667495	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	34679380	170667495	72531878	22	47141											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218678511	218678511	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	218678511	C	G	218678511	2	3	735	1	0	0	0	0	0	0	0	1	16355	639	23	4		4	TNS1	2	218678511	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	48011016	218678511	24520862	23	47142											
PTPRN	5798	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220164041	220164041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	220164041	A	T	220164041	3	4	735	1	0	0	0	0	1	0	0	0	12820	159	6	5	1402	5	PTPRN	2	220164041	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	1485530	220164041	23035332	24	47143											
PTPRN	5798	bcgsc.ca	37	2	220164916	220164916	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	220164916	A	G	220164916	2	3	735	1	0	0	0	0	0	0	0	1	12820	175	7	3		3	PTPRN	2	220164916	Silent	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	875	220164916	23034457	25	47144											
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241465102	241465102	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	241465102	C	T	241465102	2	4	735	1	0	0	0	0	0	0	0	1	634	695	24	2		2	ANKMY1	2	241465102	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	21300186	241465102	1734271	26	47145											
CAMP	820	bcgsc.ca	37	3	48266885	48266885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	48266885	C	T	48266885	3	4	735	1	0	0	0	0	1	0	0	0	2612	759	27	1	498	1	CAMP	3	48266885	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10		48266885	149755545	27	47146											
ROBO1	6091	broad.mit.edu	37	3	79639003	79639003	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	79639003	T	-	79639003	7	5	735	1	0	1	0	1	0	0	0	0	13526	1493	52	0	5088	0	ROBO1	3	79639003	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	31372118	79639003	118383427	28	47147											
ARHGAP31	57514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	119099827	119099827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	119099827	A	G	119099827	3	3	735	1	0	0	0	0	1	0	0	0	880	159	6	3	439	3	ARHGAP31	3	119099827	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	39460824	119099827	78922603	29	47148											
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121415217	121415217	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	121415217	G	A	121415217	4	1	735	1	0	0	0	0	0	1	0	0	6572	1386	48	2	5681	2	GOLGB1	3	121415217	Nonsense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	2315390	121415217	76607213	30	47149											
ARMC8	25852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137982982	137982982	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	137982982	C	T	137982982	2	4	735	1	0	0	0	0	0	0	0	1	957	477	17	2		2	ARMC8	3	137982982	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	16567765	137982982	60039448	31	47150											
RBP1	5947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	139237296	139237296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	139237296	C	A	139237296	3	1	735	1	0	0	0	0	1	0	0	0	13168	856	30	4	94	4	RBP1	3	139237296	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	1254314	139237296	58785134	32	47151											
LEPREL1	55214	ucsc.edu	37	3	189711953	189711953	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	189711953	A	G	189711953	2	3	735	1	0	0	0	0	0	0	0	1	8737	157	6	3		3	LEPREL1	3	189711953	Silent	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	50474657	189711953	8310477	33	47152											
EXOC1	55763	hgsc.bcm.edu	37	4	56738102	56738102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	56738102	T	C	56738102	3	2	735	1	0	0	0	0	1	0	0	0	5303	1551	54	3	1078	3	EXOC1	4	56738102	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		56738102	134416174	34	47153											
REST	5978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57797826	57797826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	57797826	A	C	57797826	3	2	735	1	0	0	0	0	1	0	0	0	13247	359	13	5	2812	5	REST	4	57797826	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	1059724	57797826	133356450	35	47154											
RAPGEF2	9693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	160268070	160268070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	160268070	T	C	160268070	3	2	735	1	0	0	0	0	1	0	0	0	13057	1435	50	3	3223	3	RAPGEF2	4	160268070	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	102470244	160268070	30886206	36	47155											
UFSP2	55325	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186334930	186334930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	186334930	T	C	186334930	3	2	735	1	0	0	0	0	1	0	0	0	16950	1464	51	3	652	3	UFSP2	4	186334930	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	26066860	186334930	4819346	37	47156											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	67588157	67588158	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	67588158	-	G	67588157	7	5	735	1	0	1	1	0	0	0	0	0	11925	69	3	0	1143	0	PIK3R1	5	67588157	Frame_Shift_Ins	INS	-	TCGA-P4-A5E7-01A-31D-A28G-10		67588157	113327103	38	47157											
C5orf30	90355	ucsc.edu;bcgsc.ca	37	5	102611692	102611692	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	102611692	C	T	102611692	2	4	735	1	0	0	0	0	0	0	0	1	2292	564	20	2		2	C5orf30	5	102611692	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	35023535	102611692	78303568	39	47158											
NQO2	4835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	3010268	3010268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	3010268	T	C	3010268	3	2	735	1	0	0	0	0	1	0	0	0	10619	1638	57	3	23	3	NQO2	6	3010268	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		3010268	168104799	40	47159											
PRPF4B	8899	bcgsc.ca	37	6	4032300	4032315	+	Frame_Shift_Del	DEL	AAGTAAAAGCAGATCC	AAGTAAAAGCAGATCC	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	AAGTAAAAGCAGATCC	AAGTAAAAGCAGATCC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	4032315	AAGTAAAAGCAGATCC	-	4032300	7	5	735	1	0	1	0	1	0	0	0	0	12583	233	9	0	555	0	PRPF4B	6	4032300	Frame_Shift_Del	DEL	AAGTAAAAGCAGATCC	TCGA-P4-A5E7-01A-31D-A28G-10	1022032	4032300	167082767	41	47160											
GABBR1	2550	hgsc.bcm.edu	37	6	29595420	29595420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	29595420	C	T	29595420	3	4	735	1	0	0	0	0	1	0	0	0	6162	652	23	1	2457	1	GABBR1	6	29595420	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	25563120	29595420	141519647	42	47161											
NFKBIL1	4795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31526116	31526116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	31526116	G	A	31526116	3	1	735	1	0	0	0	0	1	0	0	0	10388	1232	43	2	888	2	NFKBIL1	6	31526116	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	1930696	31526116	139588951	43	47162											
ZBTB22	9278	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33284267	33284267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	33284267	A	G	33284267	3	3	735	1	0	0	0	0	1	0	0	0	17542	159	6	3	1481	3	ZBTB22	6	33284267	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	1758151	33284267	137830800	44	47163											
HCRTR2	3062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	55039411	55039411	+	Missense_Mutation	SNP	C	C	G	rs76774128	alternate_allele	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	55039411	C	G	55039411	3	3	735	1	0	0	0	0	1	0	0	0	7009	855	30	4	28	4	HCRTR2	6	55039411	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	21755144	55039411	116075656	45	47164											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75848659	75848659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	75848659	G	T	75848659	3	4	735	1	0	0	0	0	1	0	0	0	3671	1377	48	4	4371	4	COL12A1	6	75848659	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	20809248	75848659	95266408	46	47165											
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	159398820	159398821	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	159398821	TG	-	159398820	7	5	735	1	0	1	0	1	0	0	0	0	13718	1464	51	0	253	0	RSPH3	6	159398820	Frame_Shift_Del	DEL	TG	TCGA-P4-A5E7-01A-31D-A28G-10	83550161	159398820	11716247	47	47166											
FOXK1	221937	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	4794196	4794196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	4794196	A	C	4794196	3	2	735	1	0	0	0	0	1	0	0	0	6021	15	1	5	863	5	FOXK1	7	4794196	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10		4794196	154344467	48	47167											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	11486930	11486931	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	11486931	-	T	11486930	7	5	735	1	0	1	1	0	0	0	0	0	15891	825	29	0	2310	0	THSD7A	7	11486930	Frame_Shift_Ins	INS	-	TCGA-P4-A5E7-01A-31D-A28G-10	6692734	11486930	147651733	49	47168											
AHR	196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	17375399	17375399	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	17375399	G	C	17375399	3	2	735	1	0	0	0	0	1	0	0	0	416	933	33	4	1183	4	AHR	7	17375399	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	5888469	17375399	141763264	50	47169											
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	69364300	69364300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	69364300	G	A	69364300	3	1	735	1	0	0	0	0	1	0	0	0	1225	1145	40	1	344	1	AUTS2	7	69364300	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	51988901	69364300	89774363	51	47170											
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72873963	72873963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	72873963	A	G	72873963	3	3	735	1	0	0	0	0	1	0	0	0	1330	246	9	3	1144	3	BAZ1B	7	72873963	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	3509663	72873963	86264700	52	47171											
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	101882763	101882763	+	Silent	SNP	G	G	A	rs140169027		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	101882763	G	A	101882763	2	1	735	1	0	0	0	0	0	0	0	1	4066	1132	40	1		1	CUX1	7	101882763	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	29008800	101882763	57255900	53	47172											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151845991	151845991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	151845991	C	A	151845991	3	1	735	1	0	0	0	0	1	0	0	0	9629	594	21	4	1746	4	MLL3	7	151845991	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	49963228	151845991	7292672	54	47173											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151873882	151873883	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	151873883	TT	-	151873882	7	5	735	1	0	1	0	1	0	0	0	0	9629	1725	60	0	6167	0	MLL3	7	151873882	Frame_Shift_Del	DEL	TT	TCGA-P4-A5E7-01A-31D-A28G-10	27891	151873882	7264781	55	47174											
VDAC3	7419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42259309	42259309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	42259309	G	C	42259309	3	2	735	1	0	0	0	0	1	0	0	0	17160	933	33	4	348	4	VDAC3	8	42259309	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		42259309	104104713	56	47175											
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	87235298	87235298	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	87235298	T	-	87235298	7	5	735	1	0	1	0	1	0	0	0	0	14708	1490	52	0	704	0	SLC7A13	8	87235298	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	44975989	87235298	59128724	57	47176											
KCNS2	3788	bcgsc.ca	37	8	99440470	99440470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	99440470	G	A	99440470	3	1	735	1	0	0	0	0	1	0	0	0	8096	1203	42	2	265	2	KCNS2	8	99440470	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	12205172	99440470	46923552	58	47177											
KIFC2	90990	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145694989	145694989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	145694989	C	A	145694989	3	1	735	1	0	0	0	0	1	0	0	0	8320	652	23	4	1385	4	KIFC2	8	145694989	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	46254519	145694989	669033	59	47178											
LINGO2	158038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	27950499	27950499	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	27950499	G	A	27950499	2	1	735	1	0	0	0	0	0	0	0	1	8822	1048	37	1		1	LINGO2	9	27950499	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		27950499	113262932	60	47179											
CEP78	84131	broad.mit.edu;bcgsc.ca	37	9	80856624	80856624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	80856624	G	T	80856624	3	4	735	1	0	0	0	0	1	0	0	0	3264	1261	44	4	526	4	CEP78	9	80856624	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	52906125	80856624	60356807	61	47180											
KIAA0368	23392	broad.mit.edu	37	9	114125936	114125936	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	114125936	T	-	114125936	7	5	735	1	0	1	0	1	0	0	0	0	8178	1493	52	0	215	0	KIAA0368	9	114125936	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	33269312	114125936	27087495	62	47181											
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	126125164	126125164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	126125164	C	T	126125164	3	4	735	1	0	0	0	0	1	0	0	0	3851	623	22	2	121	2	CRB2	9	126125164	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	11999228	126125164	15088267	63	47182											
FIBCD1	84929	hgsc.bcm.edu	37	9	133813948	133813948	+	Missense_Mutation	SNP	T	T	C	rs199804534		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	133813948	T	C	133813948	3	2	735	1	0	0	0	0	1	0	0	0	5891	1551	54	3	1366	3	FIBCD1	9	133813948	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	7688784	133813948	7399483	64	47183											
SFMBT2	57713	hgsc.bcm.edu	37	10	7214001	7214001	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	7214001	G	A	7214001	2	1	735	1	0	0	0	0	0	0	0	1	14171	1219	43	2		2	SFMBT2	10	7214001	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		7214001	128320746	65	47184											
PLXDC2	84898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	20335920	20335920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	20335920	G	T	20335920	3	4	735	1	0	0	0	0	1	0	0	0	12125	1368	48	4	457	4	PLXDC2	10	20335920	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	13121919	20335920	115198827	66	47185											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70332130	70332130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	70332130	T	C	70332130	3	2	735	1	0	0	0	0	1	0	0	0	15781	1764	61	3	37	3	TET1	10	70332130	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	49996210	70332130	65202617	67	47186											
OIT3	170392	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74692266	74692266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	74692266	T	G	74692266	3	3	735	1	0	0	0	0	1	0	0	0	10856	1435	50	5	1656	5	OIT3	10	74692266	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	4360136	74692266	60842481	68	47187											
KCNMA1	3778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	78651371	78651371	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	78651371	C	G	78651371	3	3	735	1	0	0	0	0	1	0	0	0	8080	739	26	4	497	4	KCNMA1	10	78651371	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	3959105	78651371	56883376	69	47188											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89717690	89717690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	89717690	A	G	89717690	3	3	735	1	0	0	0	0	1	0	0	0	12748	217	8	3	741	3	PTEN	10	89717690	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	11066319	89717690	45817057	70	47189											
PDZD8	118987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	119043959	119043959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	119043959	G	T	119043959	3	4	735	1	0	0	0	0	1	0	0	0	11712	1000	35	4	1183	4	PDZD8	10	119043959	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	29326269	119043959	16490788	71	47190											
PWWP2B	170394	hgsc.bcm.edu	37	10	134218416	134218416	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	134218416	C	T	134218416	2	4	735	1	0	0	0	0	0	0	0	1	12859	796	28	2		2	PWWP2B	10	134218416	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	15174457	134218416	1316331	72	47191											
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1018068	1018068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	1018068	G	A	1018068	3	1	735	1	0	0	0	0	1	0	0	0	9987	1348	47	2	2598	2	MUC6	11	1018068	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		1018068	133988448	73	47192											
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	1253980	A	G	1253980	3	3	735	1	0	0	0	0	1	0	0	0	9986	275	10	3	2120	3	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	235912	1253980	133752536	74	47193											
MUC5B	727897	bcgsc.ca	37	11	1267042	1267042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	1267042	A	G	1267042	3	3	735	1	0	0	0	0	1	0	0	0	9986	188	7	3	9063	3	MUC5B	11	1267042	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	13062	1267042	133739474	75	47194											
AHNAK	79026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62297916	62297916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	62297916	T	C	62297916	3	2	735	1	0	0	0	0	1	0	0	0	414	1464	51	3	13819	3	AHNAK	11	62297916	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	61030874	62297916	72708600	76	47195											
EEF1G	1937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62334912	62334912	+	Missense_Mutation	SNP	A	A	C	rs11549626		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	62334912	A	C	62334912	3	2	735	1	0	0	0	0	1	0	0	0	4930	131	5	5	722	5	EEF1G	11	62334912	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	36996	62334912	72671604	77	47196											
DGAT2	84649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	75509414	75509414	+	Missense_Mutation	SNP	G	G	C	rs145750206	byfrequency;alternate_allele	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	75509414	G	C	75509414	3	2	735	1	0	0	0	0	1	0	0	0	4460	1000	35	4	978	4	DGAT2	11	75509414	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	13174502	75509414	59497102	78	47197											
KLRC3	3823	hgsc.bcm.edu;broad.mit.edu	37	12	10573086	10573086	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	10573086	T	-	10573086	7	5	735	1	0	1	0	1	0	0	0	0	8424	1608	56	0	782	0	KLRC3	12	10573086	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10		10573086	123278809	79	47198											
KLRC2	3822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10588522	10588522	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	10588522	T	-	10588522	7	5	735	1	0	1	0	1	0	0	0	0	8423	1608	56	0	655	0	KLRC2	12	10588522	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	15436	10588522	123263373	80	47199											
DDX11	1663	ucsc.edu	37	12	31244689	31244689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	31244689	G	A	31244689	3	1	735	1	0	0	0	0	1	0	0	0	4345	1203	42	2	1160	2	DDX11	12	31244689	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	20656167	31244689	102607206	81	47200											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	31551284	31551284	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	31551284	C	T	31551284	2	4	735	1	0	0	0	0	0	0	0	1	4439	726	26	2		2	DENND5B	12	31551284	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	306595	31551284	102300611	82	47201											
PRPH	5630	hgsc.bcm.edu	37	12	49689459	49689459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	49689459	G	A	49689459	3	1	735	1	0	0	0	0	1	0	0	0	12586	1203	42	2	478	2	PRPH	12	49689459	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	18138175	49689459	84162436	83	47202											
KRT2	3849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53045499	53045499	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	53045499	G	C	53045499	3	2	735	1	0	0	0	0	1	0	0	0	8464	1000	35	4	1527	4	KRT2	12	53045499	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	3356040	53045499	80806396	84	47203											
MDM1	56890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	68696605	68696605	+	Silent	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	68696605	T	A	68696605	2	1	735	1	0	0	0	0	0	0	0	1	9419	1744	61	5		5	MDM1	12	68696605	Silent	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	15651106	68696605	65155290	85	47204											
BTBD11	121551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108035881	108035881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	108035881	T	G	108035881	3	3	735	1	0	0	0	0	1	0	0	0	1541	1551	54	5	3014	5	BTBD11	12	108035881	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	39339276	108035881	25816014	86	47205											
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	119583229	119583229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	119583229	C	A	119583229	3	1	735	1	0	0	0	0	1	0	0	0	15183	739	26	4	849	4	SRRM4	12	119583229	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	11547348	119583229	14268666	87	47206											
ATP12A	479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25265339	25265339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	25265339	T	C	25265339	3	2	735	1	0	0	0	0	1	0	0	0	1122	1493	52	3	1067	3	ATP12A	13	25265339	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		25265339	89904539	88	47207											
RABGGTA	5875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24734893	24734893	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	24734893	C	T	24734893	2	4	735	1	0	0	0	0	0	0	0	1	12980	755	27	1		1	RABGGTA	14	24734893	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10		24734893	82614647	89	47208											
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	36143779	36143779	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	36143779	A	C	36143779	2	2	735	1	0	0	0	0	0	0	0	1	13026	175	7	5		5	RALGAPA1	14	36143779	Silent	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	11408886	36143779	71205761	90	47209											
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	76243163	76243163	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	76243163	A	-	76243163	7	5	735	1	0	1	0	1	0	0	0	0	16742	246	9	0	2443	0	TTLL5	14	76243163	Frame_Shift_Del	DEL	A	TCGA-P4-A5E7-01A-31D-A28G-10	40099384	76243163	31106377	91	47210											
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65495764	65495764	+	Missense_Mutation	SNP	C	C	G	rs185181701	alternate_allele	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	65495764	C	G	65495764	3	3	735	1	0	0	0	0	1	0	0	0	3431	797	28	4	2602	4	CILP	15	65495764	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10		65495764	37035628	92	47211											
ZNF75A	7627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3363138	3363138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	3363138	T	A	3363138	3	1	735	1	0	0	0	0	1	0	0	0	18145	1461	51	5	65	5	ZNF75A	16	3363138	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		3363138	86991615	93	47212											
LOC81691	0	broad.mit.edu;bcgsc.ca	37	16	20851720	20851720	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	20851720	G	-	20851720	7	5	735	1	0	1	0	1	0	0	0	0	8897	1000	35	0	1610	0	LOC81691	16	20851720	Frame_Shift_Del	DEL	G	TCGA-P4-A5E7-01A-31D-A28G-10	17488582	20851720	69503033	94	47213											
IRX3	79191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	54319068	54319068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	54319068	C	T	54319068	3	4	735	1	0	0	0	0	1	0	0	0	7852	739	26	2	792	2	IRX3	16	54319068	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	33467348	54319068	36035685	95	47214											
ACADVL	37	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7127679	7127679	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	7127679	T	C	7127679	2	2	735	1	0	0	0	0	0	0	0	1	116	1799	63	3		3	ACADVL	17	7127679	Silent	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		7127679	74067531	96	47215											
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7405000	7405000	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	7405000	G	A	7405000	2	1	735	1	0	0	0	0	0	0	0	1	12221	1020	36	2		2	POLR2A	17	7405000	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	277321	7405000	73790210	97	47216											
SLC46A1	113235	ucsc.edu;bcgsc.ca	37	17	26731871	26731871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	26731871	A	C	26731871	3	2	735	1	0	0	0	0	1	0	0	0	14657	72	3	5	552	5	SLC46A1	17	26731871	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	19326871	26731871	54463339	98	47217											
MRPL45	84311	broad.mit.edu;bcgsc.ca	37	17	36478132	36478132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	36478132	C	T	36478132	3	4	735	1	0	0	0	0	1	0	0	0	9816	710	25	2	740	2	MRPL45	17	36478132	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	9746261	36478132	44717078	99	47218											
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36492994	36492994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	36492994	C	T	36492994	3	4	735	1	0	0	0	0	1	0	0	0	6681	797	28	2	6041	2	GPR179	17	36492994	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	14862	36492994	44702216	100	47219											
KRTAP4-5	85289	hgsc.bcm.edu;broad.mit.edu	37	17	39305911	39305912	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCCT	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	GCAGCAGGTGGTCCT	39305912	-	GCAGCAGGTGGTCCT	39305911	7	5	735	1	0	1	1	0	0	0	0	0	8561	1116	39	0	440	0	KRTAP4-5	17	39305911	In_Frame_Ins	INS	-	TCGA-P4-A5E7-01A-31D-A28G-10	2812917	39305911	41889299	101	47220											
GPATCH8	23131	hgsc.bcm.edu;bcgsc.ca	37	17	42475173	42475176	+	Frame_Shift_Del	DEL	TGAG	TGAG	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TGAG	TGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	42475176	TGAG	-	42475173	7	5	735	1	0	1	0	1	0	0	0	0	6601	1799	63	0	240	0	GPATCH8	17	42475173	Frame_Shift_Del	DEL	TGAG	TCGA-P4-A5E7-01A-31D-A28G-10	3169262	42475173	38720037	102	47221											
OTOP3	347741	broad.mit.edu	37	17	72942796	72942796	+	Silent	SNP	G	G	A	rs200903740		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	72942796	G	A	72942796	2	1	735	1	0	0	0	0	0	0	0	1	11314	1132	40	1		1	OTOP3	17	72942796	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	30467623	72942796	8252414	103	47222											
CCDC40	55036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78055491	78055491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	78055491	C	A	78055491	3	1	735	1	0	0	0	0	1	0	0	0	2814	507	18	4	1751	4	CCDC40	17	78055491	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	5112695	78055491	3139719	104	47223											
MYL12B	103910	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3273023	3273023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	3273023	C	G	3273023	3	3	735	1	0	0	0	0	1	0	0	0	10053	827	29	4	129	4	MYL12B	18	3273023	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10		3273023	74804225	105	47224											
HMHA1	23526	hgsc.bcm.edu	37	19	1081736	1081736	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	1081736	A	C	1081736	3	2	735	1	0	0	0	0	1	0	0	0	7247	86	3	5	2448	5	HMHA1	19	1081736	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10		1081736	58047247	106	47225											
EVI5L	115704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7917990	7917990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	G	7917990	C	G	7917990	3	3	735	1	0	0	0	0	1	0	0	0	5292	623	22	4	1036	4	EVI5L	19	7917990	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	6836254	7917990	51210993	107	47226											
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12874398	12874398	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	12874398	T	-	12874398	7	5	735	1	0	1	0	1	0	0	0	0	7290	1609	56	0	213	0	HOOK2	19	12874398	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	4956408	12874398	46254585	108	47227											
PGLYRP2	114770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15582776	15582776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	15582776	G	A	15582776	3	1	735	1	0	0	0	0	1	0	0	0	11801	1145	40	1	474	1	PGLYRP2	19	15582776	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	2708378	15582776	43546207	109	47228											
TMEM38A	79041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16793291	16793291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	16793291	G	C	16793291	3	2	735	1	0	0	0	0	1	0	0	0	16171	943	33	4	540	4	TMEM38A	19	16793291	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	1210515	16793291	42335692	110	47229											
UNC13A	23025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17767189	17767189	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	17767189	G	T	17767189	2	4	735	1	0	0	0	0	0	0	0	1	16996	958	34	4		4	UNC13A	19	17767189	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	973898	17767189	41361794	111	47230											
ETHE1	23474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44030496	44030497	+	Missense_Mutation	DNP	TA	TA	AT	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	AT	44030497	TA	AT	44030496	3	1	735	1	0	0	0	0	1	0	0	0	5274	1638	57	5	552	5	ETHE1	19	44030496	Missense_Mutation	DNP	TA	TCGA-P4-A5E7-01A-31D-A28G-10	26263307	44030496	15098487	112	47231											
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50411616	50411633	+	In_Frame_Del	DEL	GTCCATGTGCGCATTGAG	GTCCATGTGCGCATTGAG	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	GTCCATGTGCGCATTGAG	GTCCATGTGCGCATTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	50411633	GTCCATGTGCGCATTGAG	-	50411616	7	5	735	1	0	1	0	1	0	0	0	0	10775	1020	36	0	123	0	NUP62	19	50411616	In_Frame_Del	DEL	GTCCATGTGCGCATTGAG	TCGA-P4-A5E7-01A-31D-A28G-10	6381120	50411616	8717367	113	47232											
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54401854	54401854	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	-	54401854	C	-	54401854	7	5	735	1	0	1	0	1	0	0	0	0	12522	507	18	0	1295	0	PRKCG	19	54401854	Frame_Shift_Del	DEL	C	TCGA-P4-A5E7-01A-31D-A28G-10	3990238	54401854	4727129	114	47233											
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	10653490	10653490	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	10653490	A	C	10653490	4	2	735	1	0	0	0	0	0	1	0	0	7941	340	12	5	3510	5	JAG1	20	10653490	Nonsense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10		10653490	52372030	115	47234											
TRPC4AP	26133	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33622951	33622951	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	33622951	G	T	33622951	2	4	735	1	0	0	0	0	0	0	0	1	16593	1335	47	4		4	TRPC4AP	20	33622951	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	22969461	33622951	29402569	116	47235											
SS18L1	26039	hgsc.bcm.edu	37	20	60738629	60738629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	60738629	C	A	60738629	3	1	735	1	0	0	0	0	1	0	0	0	15188	709	25	4	694	4	SS18L1	20	60738629	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	27115678	60738629	2286891	117	47236											
PWP2	5822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45534138	45534138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	45534138	T	C	45534138	3	2	735	1	0	0	0	0	1	0	0	0	12857	1696	59	3	319	3	PWP2	21	45534138	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		45534138	2595757	118	47237											
C22orf15	150248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24106287	24106287	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	24106287	G	A	24106287	2	1	735	1	0	0	0	0	0	0	0	1	2138	1306	46	2		2	C22orf15	22	24106287	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		24106287	27198279	119	47238											
GATSL3	652968	hgsc.bcm.edu	37	22	30685454	30685454	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	T	30685454	C	T	30685454	2	4	735	1	0	0	0	0	0	0	0	1	6272	610	22	2		2	GATSL3	22	30685454	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	6579167	30685454	20619112	120	47239											
CBY1	25776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39066951	39066951	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	A	39066951	G	A	39066951	2	1	735	1	0	0	0	0	0	0	0	1	2727	1335	47	2		2	CBY1	22	39066951	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	8381497	39066951	12237615	121	47240											
SLC6A14	11254	broad.mit.edu	37	X	115568961	115568961	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	C	115568961	G	C	115568961	3	2	735	1	0	0	0	0	1	0	0	0	14690	1029	36	4	58	4	SLC6A14	23	115568961	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		115568961	39701599	122	47241											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	21133827	21133829	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	21133829	CTC	-	21133827	7	5	736	1	0	1	0	1	0	0	0	0	5040	564	20	0	18	0	EIF4G3	1	21133827	In_Frame_Del	DEL	CTC	TCGA-P4-A5E8-01A-11D-A28G-10		21133827	228116794	1	47242											
MSH4	4438	hgsc.bcm.edu	37	1	76346925	76346930	+	Splice_Site	DEL	TTTCAG	TTTCAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	TTTCAG	TTTCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	76346930	TTTCAG	-	76346925	8	5	736	1	0	1	0	1	0	0	1	0	9879	1856	64	0		0	MSH4	1	76346925	Splice_Site	DEL	TTTCAG	TCGA-P4-A5E8-01A-11D-A28G-10	55213098	76346925	172903696	2	47243	699	2									
MSH4	4438	bcgsc.ca	37	1	76346930	76346930	+	Splice_Site	DEL	G	G	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	76346930	G	-	76346930	8	5	736	1	0	1	0	1	0	0	1	0	9879	1014	35	0	1835	0	MSH4	1	76346930	Splice_Site	DEL	G	TCGA-P4-A5E8-01A-11D-A28G-10	5	76346930	172903691	3	47244	699	2									
LYSMD1	388695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151134570	151134570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	151134570	G	T	151134570	3	4	736	1	0	0	0	0	1	0	0	0	9131	1386	48	4	504	4	LYSMD1	1	151134570	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	74787640	151134570	98116051	4	47245											
SHC1	6464	broad.mit.edu	37	1	154938022	154938022	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	C	154938022	A	C	154938022	2	2	736	1	0	0	0	0	0	0	0	1	14283	146	6	5		5	SHC1	1	154938022	Silent	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	3803452	154938022	94312599	5	47246											
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu	37	1	179815212	179815212	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	C	179815212	A	C	179815212	2	2	736	1	0	0	0	0	0	0	0	1	16385	1	1	5		5	TOR1AIP2	1	179815212	Silent	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	24877190	179815212	69435409	6	47247											
GPR37L1	9283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	202097307	202097311	+	Frame_Shift_Del	DEL	CTCAA	CTCAA	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CTCAA	CTCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	202097311	CTCAA	-	202097307	7	5	736	1	0	1	0	1	0	0	0	0	6699	797	28	0	1075	0	GPR37L1	1	202097307	Frame_Shift_Del	DEL	CTCAA	TCGA-P4-A5E8-01A-11D-A28G-10	22282095	202097307	47153314	7	47248											
THUMPD2	80745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	39964198	39964199	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	39964199	CT	-	39964198	7	5	736	1	0	1	0	1	0	0	0	0	15895	579	20	0	326	0	THUMPD2	2	39964198	Frame_Shift_Del	DEL	CT	TCGA-P4-A5E8-01A-11D-A28G-10		39964198	203235175	8	47249	700	2									
THUMPD2	80745	hgsc.bcm.edu	37	2	39964200	39964200	+	Splice_Site	SNP	C	C	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	G	39964200	C	G	39964200	5	3	736	1	0	0	0	0	0	0	1	0	15895	927	32	4	328	4	THUMPD2	2	39964200	Splice_Site	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	2	39964200	203235173	9	47250	700	2									
PPM1B	5495	broad.mit.edu	37	2	44429130	44429130	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	G	44429130	A	G	44429130	2	3	736	1	0	0	0	0	0	0	0	1	12346	436	16	3		3	PPM1B	2	44429130	Silent	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	4464930	44429130	198770243	10	47251											
TEKT4	150483	broad.mit.edu	37	2	95539829	95539830	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	G	95539830	-	G	95539829	7	5	736	1	0	1	1	0	0	0	0	0	15767	652	23	0	699	0	TEKT4	2	95539829	Frame_Shift_Ins	INS	-	TCGA-P4-A5E8-01A-11D-A28G-10	51110699	95539829	147659544	11	47252											
TSGA10	80705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99634687	99634687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	99634687	C	T	99634687	3	4	736	1	0	0	0	0	1	0	0	0	16629	884	31	1	56	1	TSGA10	2	99634687	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	4094858	99634687	143564686	12	47253											
EPC2	26122	broad.mit.edu;bcgsc.ca	37	2	149519453	149519453	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	149519453	A	T	149519453	3	4	736	1	0	0	0	0	1	0	0	0	5163	43	2	5	787	5	EPC2	2	149519453	Missense_Mutation	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	49884766	149519453	93679920	13	47254											
HOXD10	3236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	176981597	176981599	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	176981599	TTT	-	176981597	7	5	736	1	0	1	0	1	0	0	0	0	7326	1596	56	0	38	0	HOXD10	2	176981597	In_Frame_Del	DEL	TTT	TCGA-P4-A5E8-01A-11D-A28G-10	27462144	176981597	66217776	14	47255											
GLS	2744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	191788697	191788701	+	Frame_Shift_Del	DEL	AAAAG	AAAAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AAAAG	AAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	191788701	AAAAG	-	191788697	7	5	736	1	0	1	0	1	0	0	0	0	6470	359	13	0	1223	0	GLS	2	191788697	Frame_Shift_Del	DEL	AAAAG	TCGA-P4-A5E8-01A-11D-A28G-10	14807100	191788697	51410676	15	47256											
MUC4	4585	broad.mit.edu	37	3	195511447	195511447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	195511447	G	A	195511447	3	1	736	1	0	0	0	0	1	0	0	0	9985	1145	40	1		1	MUC4	3	195511447	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		195511447	2510983	16	47257											
MUC4	4585	bcgsc.ca	37	3	195512690	195512690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	C	195512690	G	C	195512690	3	2	736	1	0	0	0	0	1	0	0	0	9985	942	33	4		4	MUC4	3	195512690	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	1243	195512690	2509740	17	47258											
BBS12	166379	ucsc.edu	37	4	123664664	123664664	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	C	123664664	T	C	123664664	2	2	736	1	0	0	0	0	0	0	0	1	1337	1683	59	3		3	BBS12	4	123664664	Silent	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10		123664664	67489612	18	47259											
TMEM184C	55751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148545023	148545023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	G	148545023	C	G	148545023	3	3	736	1	0	0	0	0	1	0	0	0	16118	903	32	4	168	4	TMEM184C	4	148545023	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	24880359	148545023	42609253	19	47260											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187629210	187629211	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	187629211	AC	-	187629210	7	5	736	1	0	1	0	1	0	0	0	0	5696	43	2	0	12098	0	FAT1	4	187629210	Frame_Shift_Del	DEL	AC	TCGA-P4-A5E8-01A-11D-A28G-10	39084187	187629210	3525066	20	47261											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	36986201	36986204	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	36986204	AAAG	-	36986201	7	5	736	1	0	1	0	1	0	0	0	0	10435	117	5	0	2953	0	NIPBL	5	36986201	Frame_Shift_Del	DEL	AAAG	TCGA-P4-A5E8-01A-11D-A28G-10		36986201	143929059	21	47262											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66456396	66456396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	66456396	C	A	66456396	3	1	736	1	0	0	0	0	1	0	0	0	9334	855	30	4	3997	4	MAST4	5	66456396	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	29470195	66456396	114458864	22	47263											
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	111506049	111506049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	111506049	G	A	111506049	3	1	736	1	0	0	0	0	1	0	0	0	5157	1348	47	2	388	2	EPB41L4A	5	111506049	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	45049653	111506049	69409211	23	47264											
APC	324	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	112154880	112154880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	112154880	G	T	112154880	3	4	736	1	0	0	0	0	1	0	0	0	763	1029	36	4	1185	4	APC	5	112154880	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	648831	112154880	68760380	24	47265											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	118556763	118556765	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	118556765	GAG	-	118556763	7	5	736	1	0	1	0	1	0	0	0	0	4596	942	33	0	8343	0	DMXL1	5	118556763	In_Frame_Del	DEL	GAG	TCGA-P4-A5E8-01A-11D-A28G-10	6401883	118556763	62358497	25	47266											
TRIM39	56658	hgsc.bcm.edu;bcgsc.ca	37	6	30303731	30303752	+	Frame_Shift_Del	DEL	GTCAGGCTTCGAGATGCTTAAG	GTCAGGCTTCGAGATGCTTAAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	GTCAGGCTTCGAGATGCTTAAG	GTCAGGCTTCGAGATGCTTAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	30303752	GTCAGGCTTCGAGATGCTTAAG	-	30303731	7	5	736	1	0	1	0	1	0	0	0	0	16525	1020	36	0	769	0	TRIM39	6	30303731	Frame_Shift_Del	DEL	GTCAGGCTTCGAGATGCTTAAG	TCGA-P4-A5E8-01A-11D-A28G-10		30303731	140811336	26	47267											
LAMA4	3910	broad.mit.edu	37	6	112463434	112463434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	C	112463434	T	C	112463434	3	2	736	1	0	0	0	0	1	0	0	0	8615	1406	49	3	2997	3	LAMA4	6	112463434	Missense_Mutation	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10	82159703	112463434	58651633	27	47268											
NMBR	4829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	142396953	142396953	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	142396953	G	A	142396953	2	1	736	1	0	0	0	0	0	0	0	1	10494	1281	45	2		2	NMBR	6	142396953	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	29933519	142396953	28718114	28	47269											
MEOX2	4223	hgsc.bcm.edu	37	7	15725800	15725800	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	15725800	G	A	15725800	2	1	736	1	0	0	0	0	0	0	0	1	9481	1252	44	2		2	MEOX2	7	15725800	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		15725800	143412863	29	47270											
HOXA7	3204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27194707	27194707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	27194707	G	A	27194707	3	1	736	1	0	0	0	0	1	0	0	0	7304	1087	38	1	182	1	HOXA7	7	27194707	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	11468907	27194707	131943956	30	47271											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	92731495	92731495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	92731495	T	-	92731495	7	5	736	1	0	1	0	1	0	0	0	0	13839	1406	49	0	857	0	SAMD9	7	92731495	Frame_Shift_Del	DEL	T	TCGA-P4-A5E8-01A-11D-A28G-10	65536788	92731495	66407168	31	47272											
PILRA	29992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99972037	99972037	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	99972037	C	T	99972037	2	4	736	1	0	0	0	0	0	0	0	1	11932	581	21	2		2	PILRA	7	99972037	Silent	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	7240542	99972037	59166626	32	47273											
MLL5	55904	broad.mit.edu	37	7	104750955	104750955	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	104750955	G	T	104750955	2	4	736	1	0	0	0	0	0	0	0	1	9631	1045	37	4		4	MLL5	7	104750955	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	4778918	104750955	54387708	33	47274											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	28984749	28984749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	G	28984749	C	G	28984749	3	3	736	1	0	0	0	0	1	0	0	0	8282	565	20	4	2432	4	KIF13B	8	28984749	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		28984749	117379273	34	47275											
DCAF13	25879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	104432551	104432551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	104432551	G	T	104432551	3	4	736	1	0	0	0	0	1	0	0	0	4268	971	34	4	592	4	DCAF13	8	104432551	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	75447802	104432551	41931471	35	47276											
KIAA2026	158358	broad.mit.edu	37	9	5923077	5923078	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	5923078	AC	-	5923077	7	5	736	1	0	1	0	1	0	0	0	0	8277	41	2	0	3396	0	KIAA2026	9	5923077	Frame_Shift_Del	DEL	AC	TCGA-P4-A5E8-01A-11D-A28G-10		5923077	135290354	36	47277											
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7621949	7621949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	7621949	C	T	7621949	3	4	736	1	0	0	0	0	1	0	0	0	7914	652	23	1	1788	1	ITIH5	10	7621949	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		7621949	127912798	37	47278											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24832228	24832229	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	24832229	AG	-	24832228	7	5	736	1	0	1	0	1	0	0	0	0	8223	175	7	0	4103	0	KIAA1217	10	24832228	Frame_Shift_Del	DEL	AG	TCGA-P4-A5E8-01A-11D-A28G-10	17210279	24832228	110702519	38	47279											
CPXM2	119587	broad.mit.edu	37	10	125651141	125651141	+	Missense_Mutation	SNP	G	G	T	rs201350090		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	125651141	G	T	125651141	3	4	736	1	0	0	0	0	1	0	0	0	3840	1203	42	4	2291	4	CPXM2	10	125651141	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	100818913	125651141	9883606	39	47280											
ACY3	91703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67413212	67413212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	67413212	G	A	67413212	3	1	736	1	0	0	0	0	1	0	0	0	227	1087	38	1	596	1	ACY3	11	67413212	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		67413212	67593304	40	47281											
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111228192	111228192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	111228192	G	A	111228192	3	1	736	1	0	0	0	0	1	0	0	0	12277	1116	39	1	344	1	POU2AF1	11	111228192	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	43814980	111228192	23778324	41	47282											
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113846045	113846045	+	Missense_Mutation	SNP	G	G	A	rs200513646		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	113846045	G	A	113846045	3	1	736	1	0	0	0	0	1	0	0	0	7451	1087	38	1	18	1	HTR3A	11	113846045	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	2617853	113846045	21160471	42	47283											
IGFBP6	3489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53494509	53494509	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	53494509	T	-	53494509	7	5	736	1	0	1	0	1	0	0	0	0	7590	1432	50	0	354	0	IGFBP6	12	53494509	Frame_Shift_Del	DEL	T	TCGA-P4-A5E8-01A-11D-A28G-10		53494509	80357386	43	47284											
FLT1	2321	broad.mit.edu	37	13	29008265	29008265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	C	29008265	T	C	29008265	3	2	736	1	0	0	0	0	1	0	0	0	5948	1512	53	3	3777	3	FLT1	13	29008265	Missense_Mutation	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10		29008265	86161613	44	47285											
POSTN	10631	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	38166281	38166281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	38166281	C	A	38166281	3	1	736	1	0	0	0	0	1	0	0	0	12266	710	25	4	2355	4	POSTN	13	38166281	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	9158016	38166281	77003597	45	47286											
HIF1A	3091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	62194216	62194223	+	Frame_Shift_Del	DEL	AACCAACC	AACCAACC	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AACCAACC	AACCAACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	62194223	AACCAACC	-	62194216	7	5	736	1	0	1	0	1	0	0	0	0	7110	362	13	0	638	0	HIF1A	14	62194216	Frame_Shift_Del	DEL	AACCAACC	TCGA-P4-A5E8-01A-11D-A28G-10		62194216	45155324	46	47287	701	2									
HIF1A	3091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	62194225	62194225	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	-	62194225	C	-	62194225	7	5	736	1	0	1	0	1	0	0	0	0	7110	827	29	0	647	0	HIF1A	14	62194225	Frame_Shift_Del	DEL	C	TCGA-P4-A5E8-01A-11D-A28G-10	9	62194225	45155315	47	47288	701	2									
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43748237	43748237	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	43748237	G	A	43748237	4	1	736	1	0	0	0	0	0	1	0	0	16395	1328	46	2	3432	2	TP53BP1	15	43748237	Nonsense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		43748237	58783155	48	47289											
NOX5	79400	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	69339166	69339166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	69339166	C	A	69339166	3	1	736	1	0	0	0	0	1	0	0	0	10566	913	32	4	1727	4	NOX5	15	69339166	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	25590929	69339166	33192226	49	47290											
VASN	114990	broad.mit.edu	37	16	4432543	4432543	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	C	4432543	A	C	4432543	2	2	736	1	0	0	0	0	0	0	0	1	17139	146	6	5		5	VASN	16	4432543	Silent	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10		4432543	85922210	50	47291											
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	16177358	16177358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	16177358	G	A	16177358	3	1	736	1	0	0	0	0	1	0	0	0	49	1175	41	2	2317	2	ABCC1	16	16177358	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	11744815	16177358	74177395	51	47292											
RLTPR	146206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67683208	67683208	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	67683208	C	T	67683208	2	4	736	1	0	0	0	0	0	0	0	1	13407	535	19	1		1	RLTPR	16	67683208	Silent	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	51505850	67683208	22671545	52	47293											
CFDP1	10428	broad.mit.edu	37	16	75446511	75446512	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	75446512	-	T	75446511	7	5	736	1	0	1	1	0	0	0	0	0	3284	912	32	0	595	0	CFDP1	16	75446511	Frame_Shift_Ins	INS	-	TCGA-P4-A5E8-01A-11D-A28G-10	7763303	75446511	14908242	53	47294											
MYO18A	399687	broad.mit.edu	37	17	27437604	27437604	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	27437604	G	T	27437604	2	4	736	1	0	0	0	0	0	0	0	1	10072	1306	46	4		4	MYO18A	17	27437604	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		27437604	53757606	54	47295											
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305775	+	Missense_Mutation	DNP	CT	CT	GC	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	GC	39305775	CT	GC	39305774	3	3	736	1	0	0	0	0	1	0	0	0	8561	912	32	4	303	4	KRTAP4-5	17	39305774	Missense_Mutation	DNP	CT	TCGA-P4-A5E8-01A-11D-A28G-10	11868170	39305774	41889436	55	47296											
SP6	80320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45925061	45925061	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	45925061	G	A	45925061	2	1	736	1	0	0	0	0	0	0	0	1	14981	1103	39	1		1	SP6	17	45925061	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	6619287	45925061	35270149	56	47297											
TANC2	26115	ucsc.edu;bcgsc.ca	37	17	61432303	61432303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	G	61432303	A	G	61432303	3	3	736	1	0	0	0	0	1	0	0	0	15557	391	14	3	1958	3	TANC2	17	61432303	Missense_Mutation	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	15507242	61432303	19762907	57	47298											
DNAI2	64446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72306227	72306227	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	72306227	G	T	72306227	2	4	736	1	0	0	0	0	0	0	0	1	4612	1335	47	4		4	DNAI2	17	72306227	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	10873924	72306227	8888983	58	47299											
RAB40B	10966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80617514	80617514	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	80617514	T	A	80617514	3	1	736	1	0	0	0	0	1	0	0	0	12954	1667	58	5	564	5	RAB40B	17	80617514	Missense_Mutation	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10	8311287	80617514	577696	59	47300											
MBD1	4152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47802004	47802004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	47802004	C	T	47802004	3	4	736	1	0	0	0	0	1	0	0	0	9349	768	27	1	1289	1	MBD1	18	47802004	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		47802004	30275244	60	47301											
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	41076606	41076606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	41076606	C	T	41076606	3	4	736	1	0	0	0	0	1	0	0	0	15133	797	28	2	7511	2	SPTBN4	19	41076606	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		41076606	18052377	61	47302											
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52376124	52376124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	52376124	C	A	52376124	3	1	736	1	0	0	0	0	1	0	0	0	18021	912	32	4	342	4	ZNF577	19	52376124	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	11299518	52376124	6752859	62	47303											
NCOA6	23054	bcgsc.ca	37	20	33337464	33337464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	C	33337464	T	C	33337464	3	2	736	1	0	0	0	0	1	0	0	0	10240	1696	59	3	3685	3	NCOA6	20	33337464	Missense_Mutation	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10		33337464	29688056	63	47304											
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34778710	34778710	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	G	34778710	C	G	34778710	3	3	736	1	0	0	0	0	1	0	0	0	5154	681	24	4	1329	4	EPB41L1	20	34778710	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	1441246	34778710	28246810	64	47305											
FAM83D	81610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37570604	37570604	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	A	37570604	G	A	37570604	2	1	736	1	0	0	0	0	0	0	0	1	5643	1277	45	2		2	FAM83D	20	37570604	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	2791894	37570604	25454916	65	47306											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50728592	50728593	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	AC	50728593	TT	AC	50728592	3	1	736	1	0	0	0	0	1	0	0	0	12131	1609	56	5	5234	5	PLXNB2	22	50728592	Missense_Mutation	DNP	TT	TCGA-P4-A5E8-01A-11D-A28G-10		50728592	575974	66	47307											
ARSE	415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2861169	2861169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	T	2861169	C	T	2861169	3	4	736	1	0	0	0	0	1	0	0	0	990	652	23	1	722	1	ARSE	23	2861169	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		2861169	152409391	67	47308											
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16459720	16459721	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	TG	16459721	-	TG	16459720	7	5	737	1	0	1	1	0	0	0	0	0	5169	43	2	0	950	0	EPHA2	1	16459720	Frame_Shift_Ins	INS	-	TCGA-P4-A5EA-01A-11D-A28G-10		16459720	232790901	1	47309											
MAP3K6	9064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27687435	27687435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	27687435	C	T	27687435	3	4	737	1	0	0	0	0	1	0	0	0	9261	864	30	2	2033	2	MAP3K6	1	27687435	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	11227715	27687435	221563186	2	47310											
ZSWIM5	57643	broad.mit.edu	37	1	45671664	45671664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	45671664	C	A	45671664	3	1	737	1	0	0	0	0	1	0	0	0	18256	739	26	4	3254	4	ZSWIM5	1	45671664	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	17984229	45671664	203578957	3	47311											
NASP	4678	broad.mit.edu;bcgsc.ca	37	1	46073053	46073073	+	In_Frame_Del	DEL	CCAAAAAAACAGAAGACAAGT	CCAAAAAAACAGAAGACAAGT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CCAAAAAAACAGAAGACAAGT	CCAAAAAAACAGAAGACAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	46073073	CCAAAAAAACAGAAGACAAGT	-	46073053	7	5	737	1	0	1	0	1	0	0	0	0	10179	739	26	0	569	0	NASP	1	46073053	In_Frame_Del	DEL	CCAAAAAAACAGAAGACAAGT	TCGA-P4-A5EA-01A-11D-A28G-10	401389	46073053	203177568	4	47312											
PRKACB	5567	ucsc.edu	37	1	84663465	84663465	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	84663465	T	C	84663465	2	2	737	1	0	0	0	0	0	0	0	1	12508	1702	59	3		3	PRKACB	1	84663465	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	38590412	84663465	164587156	5	47313											
PHTF1	10745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	114255942	114255943	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	114255943	TT	-	114255942	7	5	737	1	0	1	0	1	0	0	0	0	11869	1617	56	0	1594	0	PHTF1	1	114255942	Frame_Shift_Del	DEL	TT	TCGA-P4-A5EA-01A-11D-A28G-10	29592477	114255942	134994679	6	47314											
TUFT1	7286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151552139	151552139	+	Silent	SNP	A	A	G	rs201062061	alternate_allele	TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	151552139	A	G	151552139	2	3	737	1	0	0	0	0	0	0	0	1	16784	69	3	3		3	TUFT1	1	151552139	Silent	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	37296197	151552139	97698482	7	47315											
GATAD2B	57459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	153792180	153792180	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	153792180	G	C	153792180	3	2	737	1	0	0	0	0	1	0	0	0	6268	1261	44	4	1450	4	GATAD2B	1	153792180	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	2240041	153792180	95458441	8	47316											
EFNA1	1942	ucsc.edu	37	1	155104060	155104060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	155104060	C	T	155104060	3	4	737	1	0	0	0	0	1	0	0	0	4952	681	24	2	344	2	EFNA1	1	155104060	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	1311880	155104060	94146561	9	47317											
SOCS5	9655	broad.mit.edu	37	2	46987222	46987224	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	46987224	ATT	-	46987222	7	5	737	1	0	1	0	1	0	0	0	0	14930	217	8	0	1555	0	SOCS5	2	46987222	In_Frame_Del	DEL	ATT	TCGA-P4-A5EA-01A-11D-A28G-10		46987222	196212151	10	47318											
ASPRV1	151516	broad.mit.edu	37	2	70188625	70188626	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	70188626	AG	-	70188625	7	5	737	1	0	1	0	1	0	0	0	0	1058	188	7	0	839	0	ASPRV1	2	70188625	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	23201403	70188625	173010748	11	47319											
ALMS1	7840	broad.mit.edu	37	2	73675809	73675809	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	73675809	A	T	73675809	4	4	737	1	0	0	0	0	0	1	0	0	535	412	15	5	2182	5	ALMS1	2	73675809	Nonsense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	3487184	73675809	169523564	12	47320											
TTL	150465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	113260608	113260609	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	113260609	AT	-	113260608	7	5	737	1	0	1	0	1	0	0	0	0	16733	101	4	0	743	0	TTL	2	113260608	Frame_Shift_Del	DEL	AT	TCGA-P4-A5EA-01A-11D-A28G-10	39584799	113260608	129938765	13	47321											
PHOSPHO2	493911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170557975	170557975	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	170557975	T	A	170557975	4	1	737	1	0	0	0	0	0	1	0	0	11864	1764	61	5	496	5	PHOSPHO2	2	170557975	Nonsense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	57297367	170557975	72641398	14	47322											
FARP2	9855	broad.mit.edu	37	2	242433486	242433487	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	242433487	-	G	242433486	7	5	737	1	0	1	1	0	0	0	0	0	5684	1461	51	0	3213	0	FARP2	2	242433486	Frame_Shift_Ins	INS	-	TCGA-P4-A5EA-01A-11D-A28G-10	71875511	242433486	765887	15	47323											
IL17RC	84818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9959173	9959173	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	9959173	C	T	9959173	2	4	737	1	0	0	0	0	0	0	0	1	7648	738	26	2		2	IL17RC	3	9959173	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		9959173	188063257	16	47324											
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	37365077	37365078	+	Splice_Site	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	37365078	AG	-	37365077	8	5	737	1	0	1	0	1	0	0	1	0	6562	202	7	0	1824	0	GOLGA4	3	37365077	Splice_Site	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	27405904	37365077	160657353	17	47325											
ROBO1	6091	ucsc.edu	37	3	78685208	78685208	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	78685208	G	A	78685208	2	1	737	1	0	0	0	0	0	0	0	1	13526	933	33	2		2	ROBO1	3	78685208	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	41320131	78685208	119337222	18	47326											
NFKBIZ	64332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	101572345	101572345	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	101572345	C	-	101572345	7	5	737	1	0	1	0	1	0	0	0	0	10390	506	18	0	993	0	NFKBIZ	3	101572345	Frame_Shift_Del	DEL	C	TCGA-P4-A5EA-01A-11D-A28G-10	22887137	101572345	96450085	19	47327											
CD96	10225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111297955	111297955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	111297955	C	T	111297955	3	4	737	1	0	0	0	0	1	0	0	0	3050	797	28	2	691	2	CD96	3	111297955	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	9725610	111297955	86724475	20	47328											
GSK3B	2932	bcgsc.ca	37	3	119642255	119642255	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	119642255	G	T	119642255	2	4	737	1	0	0	0	0	0	0	0	1	6831	1066	37	4		4	GSK3B	3	119642255	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	8344300	119642255	78380175	21	47329											
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	147128794	147128794	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	147128794	G	T	147128794	4	4	737	1	0	0	0	0	0	1	0	0	17690	1059	37	4	897	4	ZIC1	3	147128794	Nonsense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	27486539	147128794	50893636	22	47330											
MAEA	10296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1332242	1332242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	1332242	G	A	1332242	3	1	737	1	0	0	0	0	1	0	0	0	9160	971	34	2	962	2	MAEA	4	1332242	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10		1332242	189822034	23	47331											
HTT	3064	broad.mit.edu	37	4	3076604	3076606	+	In_Frame_Del	DEL	CAG	CAG	-	rs10618869		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	3076606	CAG	-	3076604	7	5	737	1	0	1	0	1	0	0	0	0	7464	595	21	0	54	0	HTT	4	3076604	In_Frame_Del	DEL	CAG	TCGA-P4-A5EA-01A-11D-A28G-10	1744362	3076604	188077672	24	47332											
SLC30A9	10463	ucsc.edu	37	4	42077746	42077746	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	42077746	T	C	42077746	2	2	737	1	0	0	0	0	0	0	0	1	14575	1461	51	3		3	SLC30A9	4	42077746	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	39001142	42077746	149076530	25	47333											
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	166996130	166996130	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	166996130	T	C	166996130	2	2	737	1	0	0	0	0	0	0	0	1	15957	1461	51	3		3	TLL1	4	166996130	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	124918384	166996130	24158146	26	47334											
MAP3K1	4214	bcgsc.ca	37	5	56183244	56183245	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	TA	56183245	-	TA	56183244	7	5	737	1	0	1	1	0	0	0	0	0	9250	942	33	0	4224	0	MAP3K1	5	56183244	Frame_Shift_Ins	INS	-	TCGA-P4-A5EA-01A-11D-A28G-10		56183244	124732016	27	47335											
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72359736	72359736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	72359736	C	A	72359736	3	1	737	1	0	0	0	0	1	0	0	0	5795	797	28	4	1484	4	FCHO2	5	72359736	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	16176492	72359736	108555524	28	47336											
IQGAP2	10788	broad.mit.edu	37	5	75960882	75960882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	75960882	A	T	75960882	3	4	737	1	0	0	0	0	1	0	0	0	7822	72	3	5	2647	5	IQGAP2	5	75960882	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	3601146	75960882	104954378	29	47337											
RASA1	5921	hgsc.bcm.edu;bcgsc.ca	37	5	86564698	86564699	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	86564699	CC	-	86564698	7	5	737	1	0	1	0	1	0	0	0	0	13073	739	26	0	432	0	RASA1	5	86564698	Frame_Shift_Del	DEL	CC	TCGA-P4-A5EA-01A-11D-A28G-10	10603816	86564698	94350562	30	47338											
ANKHD1-EIF4EBP3	404734	broad.mit.edu;bcgsc.ca	37	5	139928645	139928646	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	139928646	AG	-	139928645	7	5	737	1	0	1	0	1	0	0	0	0	629	180	7	0	7972	0	ANKHD1-EIF4EBP3	5	139928645	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	53363947	139928645	40986615	31	47339											
PCDHB5	26167	broad.mit.edu;bcgsc.ca	37	5	140515133	140515134	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	140515134	AG	-	140515133	7	5	737	1	0	1	0	1	0	0	0	0	11552	175	7	0	119	0	PCDHB5	5	140515133	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	586488	140515133	40400127	32	47340											
NR3C1	2908	ucsc.edu	37	5	142680190	142680190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	142680190	A	G	142680190	3	3	737	1	0	0	0	0	1	0	0	0	10637	131	5	3	798	3	NR3C1	5	142680190	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	2165057	142680190	38235070	33	47341											
APOM	55937	broad.mit.edu	37	6	31625014	31625014	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	31625014	C	G	31625014	2	3	737	1	0	0	0	0	0	0	0	1	812	900	32	4		4	APOM	6	31625014	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		31625014	139490053	34	47342											
RARS2	57038	ucsc.edu;bcgsc.ca	37	6	88299660	88299660	+	Missense_Mutation	SNP	G	G	A	rs201899366		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	88299660	G	A	88299660	3	1	737	1	0	0	0	0	1	0	0	0	13072	1058	37	1	1800	1	RARS2	6	88299660	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	56674646	88299660	82815407	35	47343											
MTRF1L	54516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153315714	153315714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	153315714	C	G	153315714	3	3	737	1	0	0	0	0	1	0	0	0	9967	912	32	4	537	4	MTRF1L	6	153315714	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	65016054	153315714	17799353	36	47344											
CARD11	84433	broad.mit.edu	37	7	2956956	2956956	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	2956956	G	A	2956956	4	1	737	1	0	0	0	0	0	1	0	0	2647	1095	38	1	817	1	CARD11	7	2956956	Nonsense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10		2956956	156181707	37	47345											
BZW2	28969	broad.mit.edu	37	7	16721024	16721024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	16721024	G	T	16721024	3	4	737	1	0	0	0	0	1	0	0	0	1581	1319	46	4	344	4	BZW2	7	16721024	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	13764068	16721024	142417639	38	47346											
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	70231266	70231266	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	70231266	G	A	70231266	2	1	737	1	0	0	0	0	0	0	0	1	1225	1132	40	1		1	AUTS2	7	70231266	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	53510242	70231266	88907397	39	47347											
FASTK	10922	bcgsc.ca	37	7	150775936	150775938	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GCT	GCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	150775938	GCT	-	150775936	7	5	737	1	0	1	0	1	0	0	0	0	5691	1194	42	0	1003	0	FASTK	7	150775936	In_Frame_Del	DEL	GCT	TCGA-P4-A5EA-01A-11D-A28G-10	80544670	150775936	8362727	40	47348											
MLL3	58508	broad.mit.edu	37	7	151945198	151945198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	151945198	G	C	151945198	3	2	737	1	0	0	0	0	1	0	0	0	9629	1319	46	4	12598	4	MLL3	7	151945198	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	1169262	151945198	7193465	41	47349											
WDR67	93594	broad.mit.edu;ucsc.edu	37	8	124094982	124094982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	124094982	C	A	124094982	3	1	737	1	0	0	0	0	1	0	0	0	17330	912	32	4	275	4	WDR67	8	124094982	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		124094982	22269040	42	47350											
OPLAH	26873	broad.mit.edu	37	8	145111554	145111554	+	Missense_Mutation	SNP	C	C	T	rs200399200		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	145111554	C	T	145111554	3	4	737	1	0	0	0	0	1	0	0	0	10883	536	19	1	2117	1	OPLAH	8	145111554	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	21016572	145111554	1252468	43	47351											
ZNF7	7553	broad.mit.edu	37	8	146066868	146066869	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	146066869	TC	-	146066868	7	5	737	1	0	1	0	1	0	0	0	0	18114	1783	62	0	390	0	ZNF7	8	146066868	Frame_Shift_Del	DEL	TC	TCGA-P4-A5EA-01A-11D-A28G-10	955314	146066868	297154	44	47352											
COL27A1	85301	broad.mit.edu	37	9	117052570	117052570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	117052570	C	A	117052570	3	1	737	1	0	0	0	0	1	0	0	0	3687	507	18	4	4513	4	COL27A1	9	117052570	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		117052570	24160861	45	47353											
TRIM32	22954	broad.mit.edu;bcgsc.ca	37	9	119461631	119461631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	119461631	T	A	119461631	3	1	737	1	0	0	0	0	1	0	0	0	16518	1580	55	5	1612	5	TRIM32	9	119461631	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	2409061	119461631	21751800	46	47354											
LMX1B	4010	broad.mit.edu	37	9	129376780	129376780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	129376780	C	A	129376780	3	1	737	1	0	0	0	0	1	0	0	0	8869	711	25	4	54	4	LMX1B	9	129376780	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	9915149	129376780	11836651	47	47355											
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	133914285	133914285	+	Silent	SNP	G	G	A	rs201170354		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	133914285	G	A	133914285	2	1	737	1	0	0	0	0	0	0	0	1	8623	1132	40	1		1	LAMC3	9	133914285	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	4537505	133914285	7299146	48	47356											
PFKP	5214	hgsc.bcm.edu	37	10	3150955	3150955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	3150955	A	-	3150955	7	5	737	1	0	1	0	1	0	0	0	0	11773	291	11	0	967	0	PFKP	10	3150955	Frame_Shift_Del	DEL	A	TCGA-P4-A5EA-01A-11D-A28G-10		3150955	132383792	49	47357											
PITRM1	10531	broad.mit.edu;bcgsc.ca	37	10	3207428	3207429	+	Splice_Site	DEL	AC	AC	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	3207429	AC	-	3207428	8	5	737	1	0	1	0	1	0	0	1	0	11960	405	14	0	2569	0	PITRM1	10	3207428	Splice_Site	DEL	AC	TCGA-P4-A5EA-01A-11D-A28G-10	56473	3207428	132327319	50	47358											
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12856228	12856228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	12856228	G	A	12856228	3	1	737	1	0	0	0	0	1	0	0	0	2599	1290	45	2	702	2	CAMK1D	10	12856228	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	9648800	12856228	122678519	51	47359											
ZNF33B	7582	ucsc.edu	37	10	43088083	43088083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	43088083	A	G	43088083	3	3	737	1	0	0	0	0	1	0	0	0	17867	449	16	3	25	3	ZNF33B	10	43088083	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	30231855	43088083	92446664	52	47360											
IKZF5	64376	broad.mit.edu;bcgsc.ca	37	10	124754057	124754057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	124754057	T	C	124754057	3	2	737	1	0	0	0	0	1	0	0	0	7625	1763	61	3	764	3	IKZF5	10	124754057	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	81665974	124754057	10780690	53	47361											
MUC2	4583	bcgsc.ca	37	11	1093312	1093312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	1093312	C	G	1093312	3	3	737	1	0	0	0	0	1	0	0	0	9982	623	22	4	5249	4	MUC2	11	1093312	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		1093312	133913204	54	47362											
KCNQ1	3784	hgsc.bcm.edu	37	11	2466535	2466535	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	2466535	G	T	2466535	2	4	737	1	0	0	0	0	0	0	0	1	8089	1074	38	4		4	KCNQ1	11	2466535	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	1373223	2466535	132539981	55	47363											
TRIM68	55128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4621750	4621750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	4621750	C	T	4621750	3	4	737	1	0	0	0	0	1	0	0	0	16553	884	31	1	247	1	TRIM68	11	4621750	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	2155215	4621750	130384766	56	47364											
CD59	966	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33731752	33731752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	33731752	C	T	33731752	3	4	737	1	0	0	0	0	1	0	0	0	3028	594	21	2	83	2	CD59	11	33731752	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	29110002	33731752	101274764	57	47365											
AHNAK	79026	broad.mit.edu;bcgsc.ca	37	11	62285795	62285796	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	62285796	AG	-	62285795	7	5	737	1	0	1	0	1	0	0	0	0	414	188	7	0	1698	0	AHNAK	11	62285795	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	28554043	62285795	72720721	58	47366											
MTA2	9219	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62364175	62364176	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	62364176	CT	-	62364175	7	5	737	1	0	1	0	1	0	0	0	0	9916	680	24	0	1230	0	MTA2	11	62364175	Frame_Shift_Del	DEL	CT	TCGA-P4-A5EA-01A-11D-A28G-10	78380	62364175	72642341	59	47367											
ZNHIT2	741	hgsc.bcm.edu	37	11	64884755	64884755	+	Missense_Mutation	SNP	G	G	A	rs200126440		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	64884755	G	A	64884755	3	1	737	1	0	0	0	0	1	0	0	0	18219	1000	35	2	844	2	ZNHIT2	11	64884755	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	2520580	64884755	70121761	60	47368											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117352683	117352683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	117352683	G	C	117352683	3	2	737	1	0	0	0	0	1	0	0	0	4771	1020	36	4	3695	4	DSCAML1	11	117352683	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	52467928	117352683	17653833	61	47369											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117869470	117869470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	117869470	G	T	117869470	3	4	737	1	0	0	0	0	1	0	0	0	7627	1145	40	4	877	4	IL10RA	11	117869470	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	516787	117869470	17137046	62	47370											
OR8D1	283159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	124180084	124180085	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	124180085	GT	-	124180084	7	5	737	1	0	1	0	1	0	0	0	0	11238	1252	44	0	350	0	OR8D1	11	124180084	Frame_Shift_Del	DEL	GT	TCGA-P4-A5EA-01A-11D-A28G-10	6310614	124180084	10826432	63	47371											
LRRK2	120892	broad.mit.edu	37	12	40742254	40742254	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	40742254	G	-	40742254	7	5	737	1	0	1	0	1	0	0	0	0	9040	933	33	0	6494	0	LRRK2	12	40742254	Frame_Shift_Del	DEL	G	TCGA-P4-A5EA-01A-11D-A28G-10		40742254	93109641	64	47372	702	2									
LRRK2	120892	broad.mit.edu	37	12	40742257	40742259	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	40742259	ATT	-	40742257	7	5	737	1	0	1	0	1	0	0	0	0	9040	98	4	0	6497	0	LRRK2	12	40742257	In_Frame_Del	DEL	ATT	TCGA-P4-A5EA-01A-11D-A28G-10	3	40742257	93109638	65	47373	702	2									
SOAT2	8435	broad.mit.edu;bcgsc.ca	37	12	53499371	53499372	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	53499372	AG	-	53499371	7	5	737	1	0	1	0	1	0	0	0	0	14924	188	7	0	316	0	SOAT2	12	53499371	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	12757114	53499371	80352524	66	47374											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101720912	101720912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	101720912	C	A	101720912	3	1	737	1	0	0	0	0	1	0	0	0	17111	913	32	4	3197	4	UTP20	12	101720912	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	48221541	101720912	32130983	67	47375											
PAH	5053	broad.mit.edu	37	12	103271308	103271308	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	103271308	T	A	103271308	3	1	737	1	0	0	0	0	1	0	0	0	11401	1464	51	5	1025	5	PAH	12	103271308	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	1550396	103271308	30580587	68	47376											
GCN1L1	10985	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120572149	120572149	+	Silent	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	120572149	G	C	120572149	2	2	737	1	0	0	0	0	0	0	0	1	6306	1103	39	4		4	GCN1L1	12	120572149	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	17300841	120572149	13279746	69	47377											
TNFRSF19	55504	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	24167593	24167593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	24167593	A	C	24167593	3	2	737	1	0	0	0	0	1	0	0	0	16304	86	3	5	185	5	TNFRSF19	13	24167593	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10		24167593	91002285	70	47378											
HMGB1	3146	broad.mit.edu	37	13	31036768	31036768	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	31036768	C	T	31036768	2	4	737	1	0	0	0	0	0	0	0	1	7232	871	31	1		1	HMGB1	13	31036768	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	6869175	31036768	84133110	71	47379											
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103328750	103328750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	103328750	G	T	103328750	3	4	737	1	0	0	0	0	1	0	0	0	16424	1183	41	4	3755	4	TPP2	13	103328750	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	72291982	103328750	11841128	72	47380											
IRS2	8660	hgsc.bcm.edu	37	13	110435073	110435073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	110435073	G	A	110435073	3	1	737	1	0	0	0	0	1	0	0	0	7848	1000	35	2	696	2	IRS2	13	110435073	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	7106323	110435073	4734805	73	47381											
GLCE	26035	hgsc.bcm.edu;bcgsc.ca	37	15	69553563	69553564	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	69553564	AG	-	69553563	7	5	737	1	0	1	0	1	0	0	0	0	6439	180	7	0	730	0	GLCE	15	69553563	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10		69553563	32977829	74	47382											
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75500838	75500838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	75500838	A	G	75500838	3	3	737	1	0	0	0	0	1	0	0	0	1795	131	5	3	2451	3	C15orf39	15	75500838	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	5947275	75500838	27030554	75	47383											
UBE2I	7329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1370453	1370453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	1370453	A	G	1370453	3	3	737	1	0	0	0	0	1	0	0	0	16871	381	14	3	366	3	UBE2I	16	1370453	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10		1370453	88984300	76	47384											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3817823	3817823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	3817823	C	A	3817823	4	1	737	1	0	0	0	0	0	1	0	0	3863	835	29	4	4244	4	CREBBP	16	3817823	Nonsense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	2447370	3817823	86536930	77	47385											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30744761	30744761	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	30744761	A	G	30744761	2	3	737	1	0	0	0	0	0	0	0	1	15147	40	2	3		3	SRCAP	16	30744761	Silent	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	26926938	30744761	59609992	78	47386											
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	61823266	61823266	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	61823266	G	C	61823266	3	2	737	1	0	0	0	0	1	0	0	0	3118	1280	45	4	1021	4	CDH8	16	61823266	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	31078505	61823266	28531487	79	47387											
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81197248	81197248	+	Missense_Mutation	SNP	C	C	T	rs200120814		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	81197248	C	T	81197248	3	4	737	1	0	0	0	0	1	0	0	0	11972	565	20	2	4036	2	PKD1L2	16	81197248	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	19373982	81197248	9157505	80	47388											
SPIRE2	84501	broad.mit.edu;bcgsc.ca	37	16	89924825	89924826	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	89924826	AG	-	89924825	7	5	737	1	0	1	0	1	0	0	0	0	15084	175	7	0	1212	0	SPIRE2	16	89924825	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	8727577	89924825	429928	81	47389											
RPH3AL	9501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	131631	131631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	131631	T	A	131631	3	1	737	1	0	0	0	0	1	0	0	0	13565	1490	52	5	601	5	RPH3AL	17	131631	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10		131631	81063579	82	47390											
TRPV3	162514	broad.mit.edu	37	17	3438998	3438998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	3438998	G	T	3438998	3	4	737	1	0	0	0	0	1	0	0	0	16609	1087	38	4	1767	4	TRPV3	17	3438998	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	3307367	3438998	77756212	83	47391											
RPL26	6154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8283223	8283223	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	8283223	A	C	8283223	3	2	737	1	0	0	0	0	1	0	0	0	13586	101	4	5	245	5	RPL26	17	8283223	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	4844225	8283223	72911987	84	47392											
C17orf80	55028	broad.mit.edu	37	17	71232036	71232037	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	71232037	CA	-	71232036	7	5	737	1	0	1	0	1	0	0	0	0	1887	827	29	0	417	0	C17orf80	17	71232036	Frame_Shift_Del	DEL	CA	TCGA-P4-A5EA-01A-11D-A28G-10	62948813	71232036	9963174	85	47393											
GGA3	23163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73239164	73239164	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	73239164	C	G	73239164	3	3	737	1	0	0	0	0	1	0	0	0	6361	826	29	4	1799	4	GGA3	17	73239164	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	2007128	73239164	7956046	86	47394											
UTS2R	2837	broad.mit.edu	37	17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	80333066	C	A	80333066	3	1	737	1	0	0	0	0	1	0	0	0	17118	768	27	4	868	4	UTS2R	17	80333066	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	7093902	80333066	862144	87	47395											
RNMT	8731	ucsc.edu	37	18	13746266	13746266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	13746266	T	C	13746266	3	2	737	1	0	0	0	0	1	0	0	0	13519	1580	55	3	1213	3	RNMT	18	13746266	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10		13746266	64330982	88	47396											
CTAGE1	64693	broad.mit.edu	37	18	19995948	19995948	+	Silent	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	19995948	G	C	19995948	2	2	737	1	0	0	0	0	0	0	0	1	3994	1277	45	4		4	CTAGE1	18	19995948	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	6249682	19995948	58081300	89	47397											
GRIN3B	116444	hgsc.bcm.edu	37	19	1003374	1003374	+	Silent	SNP	G	G	A	rs34585248		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	1003374	G	A	1003374	2	1	737	1	0	0	0	0	0	0	0	1	6791	1074	38	1		1	GRIN3B	19	1003374	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10		1003374	58125609	90	47398											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9058716	9058716	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	9058716	G	C	9058716	4	2	737	1	0	0	0	0	0	1	0	0	9980	1294	45	4	15121	4	MUC16	19	9058716	Nonsense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	8055342	9058716	50070267	91	47399											
ZNF257	113835	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22271296	22271296	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	22271296	G	A	22271296	2	1	737	1	0	0	0	0	0	0	0	1	17812	991	35	2		2	ZNF257	19	22271296	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	13212580	22271296	36857687	92	47400											
PRKCG	5582	broad.mit.edu	37	19	54401866	54401866	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	54401866	C	G	54401866	3	3	737	1	0	0	0	0	1	0	0	0	12522	855	30	4	1307	4	PRKCG	19	54401866	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	32130570	54401866	4727117	93	47401											
MBOAT7	79143	broad.mit.edu	37	19	54684811	54684811	+	Missense_Mutation	SNP	T	T	C	rs200188828		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	54684811	T	C	54684811	3	2	737	1	0	0	0	0	1	0	0	0	9365	1551	54	3	901	3	MBOAT7	19	54684811	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	282945	54684811	4444172	94	47402											
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	58384712	A	G	58384712	2	3	737	1	0	0	0	0	0	0	0	1	18188	446	16	3		3	ZNF814	19	58384712	Silent	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	3699901	58384712	744271	95	47403											
TASP1	55617	broad.mit.edu	37	20	13561621	13561621	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	13561621	C	T	13561621	2	4	737	1	0	0	0	0	0	0	0	1	15601	912	32	2		2	TASP1	20	13561621	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		13561621	49463899	96	47404											
C22orf39	128977	broad.mit.edu	37	22	19435297	19435299	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	19435299	AGA	-	19435297	7	5	737	1	0	1	0	1	0	0	0	0	2149	188	7	0	469	0	C22orf39	22	19435297	In_Frame_Del	DEL	AGA	TCGA-P4-A5EA-01A-11D-A28G-10		19435297	31869269	97	47405											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30057329	30057329	+	Splice_Site	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	30057329	G	A	30057329	5	1	737	1	0	0	0	0	0	0	1	0	10364	1275	44	2	841	2	NF2	22	30057329	Splice_Site	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	10622032	30057329	21247237	98	47406											
TOM1	10043	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35723290	35723291	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	TC	35723291	GA	TC	35723290	3	4	737	1	0	0	0	0	1	0	0	0	16363	933	33	4	701	4	TOM1	22	35723290	Missense_Mutation	DNP	GA	TCGA-P4-A5EA-01A-11D-A28G-10	5665961	35723290	15581276	99	47407											
ZRSR2	8233	hgsc.bcm.edu	37	X	15841231	15841236	+	In_Frame_Del	DEL	AGCCGG	AGCCGG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AGCCGG	AGCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	15841236	AGCCGG	-	15841231	7	5	737	1	0	1	0	1	0	0	0	0	18237	188	7	0	1357	0	ZRSR2	23	15841231	In_Frame_Del	DEL	AGCCGG	TCGA-P4-A5EA-01A-11D-A28G-10		15841231	139429329	100	47408											
BCOR	54880	broad.mit.edu	37	X	39913206	39913207	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	-	39913207	AC	-	39913206	7	5	737	1	0	1	0	1	0	0	0	0	1386	43	2	0	366	0	BCOR	23	39913206	Frame_Shift_Del	DEL	AC	TCGA-P4-A5EA-01A-11D-A28G-10	24071975	39913206	115357354	101	47409											
USP9X	8239	broad.mit.edu	37	X	41022128	41022128	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	41022128	T	C	41022128	2	2	737	1	0	0	0	0	0	0	0	1	17102	1741	61	3		3	USP9X	23	41022128	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	1108922	41022128	114248432	102	47410											
TFE3	7030	broad.mit.edu	37	X	48888986	48888986	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	A	48888986	G	A	48888986	4	1	737	1	0	0	0	0	0	1	0	0	15812	1328	46	2	525	2	TFE3	23	48888986	Nonsense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	7866858	48888986	106381574	103	47411											
DGKK	139189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50144042	50144042	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	50144042	T	C	50144042	2	2	737	1	0	0	0	0	0	0	0	1	4474	1606	56	3		3	DGKK	23	50144042	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	1255056	50144042	105126518	104	47412											
ZXDB	158586	hgsc.bcm.edu	37	X	57618715	57618715	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	T	57618715	C	T	57618715	2	4	737	1	0	0	0	0	0	0	0	1	18263	639	23	1		1	ZXDB	23	57618715	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	7474673	57618715	97651845	105	47413											
GLUD2	2747	ucsc.edu	37	X	120182480	120182480	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	G	120182480	A	G	120182480	2	3	737	1	0	0	0	0	0	0	0	1	6484	378	14	3		3	GLUD2	23	120182480	Silent	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	62563765	120182480	35088080	106	47414											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122757675	122757675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	C	122757675	T	C	122757675	3	2	737	1	0	0	0	0	1	0	0	0	15877	1850	64	3	1359	3	THOC2	23	122757675	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	2575195	122757675	32512885	107	47415											
CASZ1	54897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10700024	10700024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	10700024	C	A	10700024	3	1	738	1	0	0	0	0	1	0	0	0	2687	739	26	4	1028	4	CASZ1	1	10700024	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		10700024	238550597	1	47416											
FBXO6	26270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11728776	11728776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	11728776	C	G	11728776	3	3	738	1	0	0	0	0	1	0	0	0	5766	680	24	4	63	4	FBXO6	1	11728776	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	1028752	11728776	237521845	2	47417											
AADACL4	343066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12711237	12711237	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	12711237	G	T	12711237	2	4	738	1	0	0	0	0	0	0	0	1	13	1335	47	4		4	AADACL4	1	12711237	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	982461	12711237	236539384	3	47418											
RHD	6007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	25628090	25628090	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	25628090	G	A	25628090	2	1	738	1	0	0	0	0	0	0	0	1	13340	1364	48	2		2	RHD	1	25628090	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	12916853	25628090	223622531	4	47419											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34015918	34015918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	34015918	G	T	34015918	3	4	738	1	0	0	0	0	1	0	0	0	3947	1290	45	4	2179	4	CSMD2	1	34015918	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	8387828	34015918	215234703	5	47420											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39853737	39853737	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	39853737	G	C	39853737	3	2	738	1	0	0	0	0	1	0	0	0	9151	1232	43	4	15398	4	MACF1	1	39853737	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	5837819	39853737	209396884	6	47421											
MAST2	23139	hgsc.bcm.edu;bcgsc.ca	37	1	46496701	46496702	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	46496702	TC	-	46496701	7	5	738	1	0	1	0	1	0	0	0	0	9332	1667	58	0	2821	0	MAST2	1	46496701	Frame_Shift_Del	DEL	TC	TCGA-P4-A5EB-01A-11D-A28G-10	6642964	46496701	202753920	7	47422											
PCSK9	255738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	55529096	55529096	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	55529096	G	-	55529096	7	5	738	1	0	1	0	1	0	0	0	0	11613	1348	47	0	1964	0	PCSK9	1	55529096	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10	9032395	55529096	193721525	8	47423											
ITGB3BP	23421	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63974218	63974218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	63974218	T	G	63974218	3	3	738	1	0	0	0	0	1	0	0	0	7903	1435	50	5	532	5	ITGB3BP	1	63974218	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	8445122	63974218	185276403	9	47424											
GNG12	55970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	68171150	68171150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	68171150	G	C	68171150	3	2	738	1	0	0	0	0	1	0	0	0	6532	1029	36	4	19	4	GNG12	1	68171150	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4196932	68171150	181079471	10	47425											
GNAI3	2773	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110125084	110125084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	110125084	T	G	110125084	3	3	738	1	0	0	0	0	1	0	0	0	6513	1435	50	5	505	5	GNAI3	1	110125084	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	41953934	110125084	139125537	11	47426											
KCNA2	3737	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111147091	111147091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	111147091	G	C	111147091	3	2	738	1	0	0	0	0	1	0	0	0	8010	1232	43	4	1189	4	KCNA2	1	111147091	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1022007	111147091	138103530	12	47427											
KCNN3	3782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154841897	154841897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	154841897	C	T	154841897	3	4	738	1	0	0	0	0	1	0	0	0	8087	652	23	1	1705	1	KCNN3	1	154841897	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	43694806	154841897	94408724	13	47428											
ZBTB7B	51043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154987232	154987232	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	154987232	C	G	154987232	3	3	738	1	0	0	0	0	1	0	0	0	17566	506	18	4	98	4	ZBTB7B	1	154987232	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	145335	154987232	94263389	14	47429											
KLHDC8A	55220	bcgsc.ca	37	1	205306599	205306599	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	205306599	G	T	205306599	4	4	738	1	0	0	0	0	0	1	0	0	8369	1195	42	4	75	4	KLHDC8A	1	205306599	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	50319367	205306599	43944022	15	47430											
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	211462545	211462545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	211462545	C	A	211462545	3	1	738	1	0	0	0	0	1	0	0	0	13197	565	20	4	776	4	RCOR3	1	211462545	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	6155946	211462545	37788076	16	47431											
AKT3	10000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	243800913	243800913	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	243800913	C	T	243800913	2	4	738	1	0	0	0	0	0	0	0	1	481	695	24	2		2	AKT3	1	243800913	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	32338368	243800913	5449708	17	47432											
OR2C3	81472	broad.mit.edu	37	1	247694872	247694872	+	Silent	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	247694872	T	A	247694872	2	1	738	1	0	0	0	0	0	0	0	1	11000	1567	55	5		5	OR2C3	1	247694872	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	3893959	247694872	1555749	18	47433											
KCNS3	3790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	18113163	18113163	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	18113163	G	C	18113163	3	2	738	1	0	0	0	0	1	0	0	0	8097	1165	41	4	890	4	KCNS3	2	18113163	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		18113163	225086210	19	47434											
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27315218	27315218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	27315218	G	T	27315218	3	4	738	1	0	0	0	0	1	0	0	0	8156	1212	42	4	117	4	KHK	2	27315218	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	9202055	27315218	215884155	20	47435											
ERLEC1	27248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54028861	54028861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	54028861	C	A	54028861	3	1	738	1	0	0	0	0	1	0	0	0	5233	913	32	4	791	4	ERLEC1	2	54028861	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	26713643	54028861	189170512	21	47436											
NAGK	55577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	71304704	71304704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	71304704	A	G	71304704	3	3	738	1	0	0	0	0	1	0	0	0	10149	72	3	3	954	3	NAGK	2	71304704	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	17275843	71304704	171894669	22	47437											
RANBP2	5903	bcgsc.ca	37	2	109382102	109382103	+	Missense_Mutation	DNP	AC	AC	GT	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	GT	109382103	AC	GT	109382102	3	3	738	1	0	0	0	0	1	0	0	0	13041	43	2	3	5185	3	RANBP2	2	109382102	Missense_Mutation	DNP	AC	TCGA-P4-A5EB-01A-11D-A28G-10	38077398	109382102	133817271	23	47438											
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128941262	128941262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	128941262	G	T	128941262	3	4	738	1	0	0	0	0	1	0	0	0	16953	1377	48	4	4408	4	UGGT1	2	128941262	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	19559160	128941262	114258111	24	47439											
GCA	25801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	163208899	163208899	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	163208899	A	C	163208899	3	2	738	1	0	0	0	0	1	0	0	0	6290	101	4	5	254	5	GCA	2	163208899	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	34267637	163208899	79990474	25	47440											
XIRP2	129446	broad.mit.edu;bcgsc.ca	37	2	168102112	168102112	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	168102112	C	G	168102112	3	3	738	1	0	0	0	0	1	0	0	0	17442	478	17	4	4240	4	XIRP2	2	168102112	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	4893213	168102112	75097261	26	47441											
SPC25	57405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	169746011	169746011	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	169746011	C	G	169746011	3	3	738	1	0	0	0	0	1	0	0	0	15034	739	26	4	679	4	SPC25	2	169746011	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	1643899	169746011	73453362	27	47442											
METTL5	29081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170677784	170677784	+	Splice_Site	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	170677784	C	A	170677784	5	1	738	1	0	0	0	0	0	0	1	0	9510	695	24	4	425	4	METTL5	2	170677784	Splice_Site	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	931773	170677784	72521589	28	47443											
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204304774	204304775	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	204304775	AC	-	204304774	7	5	738	1	0	1	0	1	0	0	0	0	13063	275	10	0	617	0	RAPH1	2	204304774	Frame_Shift_Del	DEL	AC	TCGA-P4-A5EB-01A-11D-A28G-10	33626990	204304774	38894599	29	47444											
NHEJ1	79840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220022946	220022946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	220022946	C	T	220022946	3	4	738	1	0	0	0	0	1	0	0	0	10409	835	29	2	788	2	NHEJ1	2	220022946	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	15718172	220022946	23176427	30	47445											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220354060	220354064	+	Frame_Shift_Del	DEL	TCTTC	TCTTC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TCTTC	TCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	220354064	TCTTC	-	220354060	7	5	738	1	0	1	0	1	0	0	0	0	15048	1783	62	0	8474	0	SPEG	2	220354060	Frame_Shift_Del	DEL	TCTTC	TCGA-P4-A5EB-01A-11D-A28G-10	331114	220354060	22845313	31	47446											
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9475587	9475587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	9475587	A	G	9475587	3	3	738	1	0	0	0	0	1	0	0	0	14147	362	13	3	136	3	SETD5	3	9475587	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10		9475587	188546843	32	47447											
TWF2	11344	broad.mit.edu;bcgsc.ca	37	3	52265541	52265541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	52265541	C	-	52265541	7	5	738	1	0	1	0	1	0	0	0	0	16794	710	25	0	776	0	TWF2	3	52265541	Frame_Shift_Del	DEL	C	TCGA-P4-A5EB-01A-11D-A28G-10	42789954	52265541	145756889	33	47448	703	2									
TWF2	11344	broad.mit.edu;bcgsc.ca	37	3	52265543	52265555	+	Frame_Shift_Del	DEL	TCTTCAGCCGCAC	TCTTCAGCCGCAC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TCTTCAGCCGCAC	TCTTCAGCCGCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	52265555	TCTTCAGCCGCAC	-	52265543	7	5	738	1	0	1	0	1	0	0	0	0	16794	1435	50	0	778	0	TWF2	3	52265543	Frame_Shift_Del	DEL	TCTTCAGCCGCAC	TCGA-P4-A5EB-01A-11D-A28G-10	2	52265543	145756887	34	47449	703	2									
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52428521	52428521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	52428521	T	C	52428521	3	2	738	1	0	0	0	0	1	0	0	0	4599	1435	50	3	10929	3	DNAH1	3	52428521	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	162978	52428521	145593909	35	47450											
ABHD6	57406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58242370	58242370	+	Silent	SNP	A	A	T	rs11544005	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	58242370	A	T	58242370	2	4	738	1	0	0	0	0	0	0	0	1	86	117	5	5		5	ABHD6	3	58242370	Silent	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	5813849	58242370	139780060	36	47451											
ZNF654	55279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	88189810	88189810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	88189810	T	G	88189810	3	3	738	1	0	0	0	0	1	0	0	0	18079	1800	63	5	1352	5	ZNF654	3	88189810	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	29947440	88189810	109832620	37	47452											
CBLB	868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	105572285	105572285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	105572285	C	A	105572285	3	1	738	1	0	0	0	0	1	0	0	0	2703	913	32	4	2624	4	CBLB	3	105572285	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	17382475	105572285	92450145	38	47453											
EAF2	55840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121554190	121554190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	121554190	G	A	121554190	3	1	738	1	0	0	0	0	1	0	0	0	4878	1000	35	2	60	2	EAF2	3	121554190	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	15981905	121554190	76468240	39	47454											
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122436993	122436993	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	122436993	C	G	122436993	4	3	738	1	0	0	0	0	0	1	0	0	11465	838	29	4	4126	4	PARP14	3	122436993	Nonsense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	882803	122436993	75585437	40	47455											
RBP2	5948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	139195286	139195286	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	139195286	T	A	139195286	3	1	738	1	0	0	0	0	1	0	0	0	13169	1783	62	5	404	5	RBP2	3	139195286	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	16758293	139195286	58827144	41	47456											
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	141162052	141162058	+	Frame_Shift_Del	DEL	TTCGGAT	TTCGGAT	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TTCGGAT	TTCGGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	141162058	TTCGGAT	-	141162052	7	5	738	1	0	1	0	1	0	0	0	0	17551	1490	52	0	824	0	ZBTB38	3	141162052	Frame_Shift_Del	DEL	TTCGGAT	TCGA-P4-A5EB-01A-11D-A28G-10	1966766	141162052	56860378	42	47457											
HPS3	84343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	148857880	148857881	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	GT	148857881	-	GT	148857880	7	5	738	1	0	1	1	0	0	0	0	0	7347	884	31	0	313	0	HPS3	3	148857880	Frame_Shift_Ins	INS	-	TCGA-P4-A5EB-01A-11D-A28G-10	7695828	148857880	49164550	43	47458											
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171395429	171395429	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	171395429	G	A	171395429	2	1	738	1	0	0	0	0	0	0	0	1	12052	1335	47	2		2	PLD1	3	171395429	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	22537549	171395429	26627001	44	47459											
RFC4	5984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186508173	186508173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	186508173	T	A	186508173	3	1	738	1	0	0	0	0	1	0	0	0	13260	1435	50	5	279	5	RFC4	3	186508173	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	15112744	186508173	11514257	45	47460											
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	996204	A	C	996204	3	2	738	1	0	0	0	0	1	0	0	0	7511	159	6	5	1150	5	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10		996204	190158072	46	47461											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3162057	3162057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	3162057	C	T	3162057	3	4	738	1	0	0	0	0	1	0	0	0	7464	652	23	1	3916	1	HTT	4	3162057	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	2165853	3162057	187992219	47	47462											
CCDC149	91050	broad.mit.edu	37	4	24838061	24838061	+	Nonsense_Mutation	SNP	G	G	T	rs189623642	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	24838061	G	T	24838061	4	4	738	1	0	0	0	0	0	1	0	0	2785	1372	48	4	885	4	CCDC149	4	24838061	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	21676004	24838061	166316215	48	47463											
PI4K2B	55300	hgsc.bcm.edu	37	4	25235821	25235821	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	25235821	C	A	25235821	2	1	738	1	0	0	0	0	0	0	0	1	11879	639	23	4		4	PI4K2B	4	25235821	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	397760	25235821	165918455	49	47464											
ARAP2	116984	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	36152575	36152575	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	36152575	G	T	36152575	2	4	738	1	0	0	0	0	0	0	0	1	839	1280	45	4		4	ARAP2	4	36152575	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	10916754	36152575	155001701	50	47465											
RFC1	5981	bcgsc.ca	37	4	39306550	39306551	+	Splice_Site	INS	-	-	AAAAAA	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	AAAAAA	39306551	-	AAAAAA	39306550	8	5	738	1	0	1	1	0	0	0	1	0	13257	1536	53	0	1493	0	RFC1	4	39306550	Splice_Site	INS	-	TCGA-P4-A5EB-01A-11D-A28G-10	3153975	39306550	151847726	51	47466											
RCHY1	25898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	76416940	76416940	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	76416940	A	-	76416940	7	5	738	1	0	1	0	1	0	0	0	0	13190	372	13	0	298	0	RCHY1	4	76416940	Frame_Shift_Del	DEL	A	TCGA-P4-A5EB-01A-11D-A28G-10	37110390	76416940	114737336	52	47467											
DSPP	1834	bcgsc.ca	37	4	88536999	88536999	+	Missense_Mutation	SNP	A	A	G	rs202222170		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	88536999	A	G	88536999	3	3	738	1	0	0	0	0	1	0	0	0	4784	275	10	3	3199	3	DSPP	4	88536999	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	12120059	88536999	102617277	53	47468											
MMRN1	22915	broad.mit.edu;bcgsc.ca	37	4	90857474	90857474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	90857474	A	C	90857474	3	2	738	1	0	0	0	0	1	0	0	0	9677	11	1	5	2665	5	MMRN1	4	90857474	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	2320475	90857474	100296802	54	47469											
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119952707	119952707	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	119952707	A	T	119952707	3	4	738	1	0	0	0	0	1	0	0	0	15469	101	4	5	2791	5	SYNPO2	4	119952707	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	29095233	119952707	71201569	55	47470											
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75888702	75888702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	75888702	G	A	75888702	3	1	738	1	0	0	0	0	1	0	0	0	7822	943	33	2	893	2	IQGAP2	5	75888702	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		75888702	105026558	56	47471	704	2									
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75888710	75888710	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	75888710	G	A	75888710	2	1	738	1	0	0	0	0	0	0	0	1	7822	1277	45	2		2	IQGAP2	5	75888710	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	8	75888710	105026550	57	47472	704	2									
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75973147	75973147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	75973147	C	T	75973147	3	4	738	1	0	0	0	0	1	0	0	0	7822	838	29	2	3742	2	IQGAP2	5	75973147	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	84437	75973147	104942113	58	47473											
REEP5	7905	broad.mit.edu;bcgsc.ca	37	5	112257770	112257770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	112257770	C	A	112257770	3	1	738	1	0	0	0	0	1	0	0	0	13221	608	21	4	471	4	REEP5	5	112257770	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	36284623	112257770	68657490	59	47474											
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131007961	131007961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	131007961	C	T	131007961	3	4	738	1	0	0	0	0	1	0	0	0	5982	690	24	2	1344	2	FNIP1	5	131007961	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	18750191	131007961	49907299	60	47475											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176721020	176721020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	176721020	G	T	176721020	3	4	738	1	0	0	0	0	1	0	0	0	10676	933	33	4	6737	4	NSD1	5	176721020	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	45713059	176721020	4194240	61	47476											
CLK4	57396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178050363	178050363	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	178050363	C	A	178050363	4	1	738	1	0	0	0	0	0	1	0	0	3541	632	22	4	1438	4	CLK4	5	178050363	Nonsense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	1329343	178050363	2864897	62	47477											
PRPF4B	8899	broad.mit.edu;bcgsc.ca	37	6	4060772	4060772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	4060772	G	T	4060772	3	4	738	1	0	0	0	0	1	0	0	0	12583	933	33	4	3004	4	PRPF4B	6	4060772	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		4060772	167054295	63	47478											
ZSCAN23	222696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	28402345	28402345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	28402345	G	A	28402345	3	1	738	1	0	0	0	0	1	0	0	0	18247	1029	36	2	106	2	ZSCAN23	6	28402345	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	24341573	28402345	142712722	64	47479											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32016288	32016288	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	32016288	C	T	32016288	2	4	738	1	0	0	0	0	0	0	0	1	16358	755	27	1		1	TNXB	6	32016288	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	3613943	32016288	139098779	65	47480											
TNXB	7148	broad.mit.edu;bcgsc.ca	37	6	32063589	32063589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	32063589	C	G	32063589	3	3	738	1	0	0	0	0	1	0	0	0	16358	864	30	4	12840	4	TNXB	6	32063589	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	47301	32063589	139051478	66	47481											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	38818063	38818080	+	In_Frame_Del	DEL	ATAAAAATAATGCAGCGA	ATAAAAATAATGCAGCGA	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	ATAAAAATAATGCAGCGA	ATAAAAATAATGCAGCGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	38818080	ATAAAAATAATGCAGCGA	-	38818063	7	5	738	1	0	1	0	1	0	0	0	0	4609	333	12	0	4719	0	DNAH8	6	38818063	In_Frame_Del	DEL	ATAAAAATAATGCAGCGA	TCGA-P4-A5EB-01A-11D-A28G-10	6754474	38818063	132297004	67	47482											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43155541	43155541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	43155541	A	G	43155541	3	3	738	1	0	0	0	0	1	0	0	0	4063	188	7	3	1694	3	CUL9	6	43155541	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	4337478	43155541	127959526	68	47483											
PKHD1	5314	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	51586795	51586795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	51586795	T	G	51586795	3	3	738	1	0	0	0	0	1	0	0	0	11978	1435	50	5	2111	5	PKHD1	6	51586795	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	8431254	51586795	119528272	69	47484											
COL21A1	81578	hgsc.bcm.edu;bcgsc.ca	37	6	55933890	55933890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	55933890	G	T	55933890	3	4	738	1	0	0	0	0	1	0	0	0	3682	1348	47	4	864	4	COL21A1	6	55933890	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4347095	55933890	115181177	70	47485											
COQ3	51805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	99823846	99823846	+	Silent	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	99823846	T	A	99823846	2	1	738	1	0	0	0	0	0	0	0	1	3748	1451	51	5		5	COQ3	6	99823846	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	43889956	99823846	71291221	71	47486											
HECA	51696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	139487930	139487930	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	139487930	G	-	139487930	7	5	738	1	0	1	0	1	0	0	0	0	7045	1116	39	0	787	0	HECA	6	139487930	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10	39664084	139487930	31627137	72	47487											
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	149997827	149997827	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	149997827	C	G	149997827	2	3	738	1	0	0	0	0	0	0	0	1	8653	610	22	4		4	LATS1	6	149997827	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	10509897	149997827	21117240	73	47488											
RBAK	57786	hgsc.bcm.edu;bcgsc.ca	37	7	5104550	5104550	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	5104550	G	-	5104550	7	5	738	1	0	1	0	1	0	0	0	0	13113	1029	36	0	1477	0	RBAK	7	5104550	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10		5104550	154034113	74	47489											
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5781127	5781127	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	5781127	G	C	5781127	4	2	738	1	0	0	0	0	0	1	0	0	13493	1294	45	4	2306	4	RNF216	7	5781127	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	676577	5781127	153357536	75	47490											
VSTM2A	222008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	54612346	54612346	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	54612346	G	-	54612346	7	5	738	1	0	1	0	1	0	0	0	0	17241	1103	39	0	117	0	VSTM2A	7	54612346	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10	48831219	54612346	104526317	76	47491											
STAG3L4	64940	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66774599	66774599	+	RNA	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	66774599	T	G	66774599	1	3	738	0	1	0	0	0	0	0	0	0	15259	1580	55	5		5	STAG3L4	7	66774599	RNA	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	12162253	66774599	92364064	77	47492											
SEMA3A	10371	broad.mit.edu	37	7	83739849	83739849	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	83739849	G	A	83739849	2	1	738	1	0	0	0	0	0	0	0	1	14037	1140	40	1		1	SEMA3A	7	83739849	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	16965250	83739849	75398814	78	47493											
AKAP9	10142	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91632281	91632281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	91632281	G	A	91632281	3	1	738	1	0	0	0	0	1	0	0	0	459	971	34	2	3080	2	AKAP9	7	91632281	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	7892432	91632281	67506382	79	47494											
ZNF655	79027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99158261	99158261	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	99158261	C	T	99158261	2	4	738	1	0	0	0	0	0	0	0	1	18080	912	32	2		2	ZNF655	7	99158261	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	7525980	99158261	59980402	80	47495											
DLD	1738	broad.mit.edu	37	7	107545820	107545820	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	107545820	T	C	107545820	2	2	738	1	0	0	0	0	0	0	0	1	4553	1461	51	3		3	DLD	7	107545820	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	8387559	107545820	51592843	81	47496											
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	139258060	139258060	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	139258060	C	A	139258060	2	1	738	1	0	0	0	0	0	0	0	1	7124	523	19	4		4	HIPK2	7	139258060	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	31712240	139258060	19880603	82	47497											
CRISPLD1	83690	ucsc.edu;bcgsc.ca	37	8	75932278	75932278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	75932278	T	A	75932278	3	1	738	1	0	0	0	0	1	0	0	0	3884	1551	54	5	1250	5	CRISPLD1	8	75932278	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10		75932278	70431744	83	47498											
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	86057651	86057651	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	86057651	G	T	86057651	4	4	738	1	0	0	0	0	0	1	0	0	9033	1291	45	4	3078	4	LRRCC1	8	86057651	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	10125373	86057651	60306371	84	47499											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113678545	113678545	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	113678545	T	G	113678545	3	3	738	1	0	0	0	0	1	0	0	0	3948	1783	62	5	8566	5	CSMD3	8	113678545	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	27620894	113678545	32685477	85	47500											
IFNE	338376	ucsc.edu;bcgsc.ca	37	9	21482028	21482028	+	RNA	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	21482028	G	A	21482028	1	1	738	0	1	0	0	0	0	0	0	0	7554	1305	45	2		2	IFNE	9	21482028	RNA	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		21482028	119731403	86	47501											
PLAA	9373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	26925951	26925951	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	26925951	C	A	26925951	2	1	738	1	0	0	0	0	0	0	0	1	12018	813	29	4		4	PLAA	9	26925951	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	5443923	26925951	114287480	87	47502											
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35547875	35547875	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	35547875	G	-	35547875	7	5	738	1	0	1	0	1	0	0	0	0	13764	1029	36	0	1359	0	RUSC2	9	35547875	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10	8621924	35547875	105665556	88	47503											
TLN1	7094	broad.mit.edu	37	9	35699091	35699097	+	Frame_Shift_Del	DEL	CAGCTCC	CAGCTCC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	CAGCTCC	CAGCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	35699097	CAGCTCC	-	35699091	7	5	738	1	0	1	0	1	0	0	0	0	15959	710	25	0	712	0	TLN1	9	35699091	Frame_Shift_Del	DEL	CAGCTCC	TCGA-P4-A5EB-01A-11D-A28G-10	151216	35699091	105514340	89	47504											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35711276	35711276	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	35711276	T	A	35711276	3	1	738	1	0	0	0	0	1	0	0	0	15959	1609	56	5	3742	5	TLN1	9	35711276	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	12185	35711276	105502155	90	47505											
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	71869284	71869285	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	71869285	-	T	71869284	7	5	738	1	0	1	1	0	0	0	0	0	15942	98	4	0	3916	0	TJP2	9	71869284	Frame_Shift_Ins	INS	-	TCGA-P4-A5EB-01A-11D-A28G-10	36158008	71869284	69344147	91	47506											
WNK2	65268	broad.mit.edu	37	9	96030146	96030146	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	96030146	A	C	96030146	3	2	738	1	0	0	0	0	1	0	0	0	17390	275	10	5	3877	5	WNK2	9	96030146	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	24160862	96030146	45183285	92	47507											
RNF20	56254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104302538	104302538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	104302538	G	C	104302538	3	2	738	1	0	0	0	0	1	0	0	0	13486	1377	48	4	189	4	RNF20	9	104302538	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	8272392	104302538	36910893	93	47508											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107573100	107573100	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	107573100	C	G	107573100	3	3	738	1	0	0	0	0	1	0	0	0	28	893	31	4	2717	4	ABCA1	9	107573100	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	3270562	107573100	33640331	94	47509											
RPL7A	6130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136216489	136216489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	136216489	C	A	136216489	3	1	738	1	0	0	0	0	1	0	0	0	13613	681	24	4	218	4	RPL7A	9	136216489	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	28643389	136216489	4996942	95	47510											
LHX3	8022	hgsc.bcm.edu	37	9	139089398	139089398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	139089398	C	T	139089398	3	4	738	1	0	0	0	0	1	0	0	0	8779	768	27	1	230	1	LHX3	9	139089398	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	2872909	139089398	2124033	96	47511											
OPTN	10133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13160994	13160994	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	13160994	C	T	13160994	4	4	738	1	0	0	0	0	0	1	0	0	10896	827	29	2	751	2	OPTN	10	13160994	Nonsense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		13160994	122373753	97	47512											
KIAA1462	57608	broad.mit.edu;bcgsc.ca	37	10	30336674	30336674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	30336674	C	T	30336674	3	4	738	1	0	0	0	0	1	0	0	0	8241	768	27	1	4023	1	KIAA1462	10	30336674	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	17175680	30336674	105198073	98	47513											
TYSND1	219743	hgsc.bcm.edu	37	10	71905802	71905819	+	In_Frame_Del	DEL	CTCTCAGTTGATCCGCCT	CTCTCAGTTGATCCGCCT	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	CTCTCAGTTGATCCGCCT	CTCTCAGTTGATCCGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	71905819	CTCTCAGTTGATCCGCCT	-	71905802	7	5	738	1	0	1	0	1	0	0	0	0	16829	797	28	0	1175	0	TYSND1	10	71905802	In_Frame_Del	DEL	CTCTCAGTTGATCCGCCT	TCGA-P4-A5EB-01A-11D-A28G-10	41569128	71905802	63628945	99	47514											
ZNF518A	9849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97917491	97917491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	97917491	G	T	97917491	3	4	738	1	0	0	0	0	1	0	0	0	17974	1203	42	4	1414	4	ZNF518A	10	97917491	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	26011689	97917491	37617256	100	47515											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135013012	135013012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	135013012	G	A	135013012	3	1	738	1	0	0	0	0	1	0	0	0	8433	1087	38	1	2867	1	KNDC1	10	135013012	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	37095521	135013012	521735	101	47516											
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4661643	4661643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	4661643	A	T	4661643	3	4	738	1	0	0	0	0	1	0	0	0	11100	101	4	5	625	5	OR51D1	11	4661643	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10		4661643	130344873	102	47517											
EIF4G2	1982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10820842	10820842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	10820842	T	G	10820842	3	3	738	1	0	0	0	0	1	0	0	0	5039	1490	52	5	281	5	EIF4G2	11	10820842	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	6159199	10820842	124185674	103	47518											
SPON1	10418	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	14063070	14063070	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	14063070	C	T	14063070	2	4	738	1	0	0	0	0	0	0	0	1	15094	816	29	2		2	SPON1	11	14063070	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	3242228	14063070	120943446	104	47519											
CKAP5	9793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46799004	46799004	+	Silent	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	46799004	G	C	46799004	2	2	738	1	0	0	0	0	0	0	0	1	3447	1161	41	4		4	CKAP5	11	46799004	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	32735934	46799004	88207512	105	47520											
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47837537	47837537	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	47837537	A	G	47837537	2	3	738	1	0	0	0	0	0	0	0	1	10764	156	6	3		3	NUP160	11	47837537	Silent	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	1038533	47837537	87168979	106	47521											
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48142728	48142728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	48142728	T	G	48142728	3	3	738	1	0	0	0	0	1	0	0	0	12817	1606	56	5	540	5	PTPRJ	11	48142728	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	305191	48142728	86863788	107	47522											
ANKK1	255239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113265705	113265705	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	113265705	A	C	113265705	3	2	738	1	0	0	0	0	1	0	0	0	631	217	8	5	545	5	ANKK1	11	113265705	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	65122977	113265705	21740811	108	47523											
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	660177	660177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	660177	C	T	660177	3	4	738	1	0	0	0	0	1	0	0	0	1268	768	27	1	1129	1	B4GALNT3	12	660177	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		660177	133191718	109	47524											
LRTM2	654429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	1940301	1940301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	1940301	A	T	1940301	3	4	738	1	0	0	0	0	1	0	0	0	9052	130	5	5	274	5	LRTM2	12	1940301	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	1280124	1940301	131911594	110	47525											
MANSC1	54682	broad.mit.edu	37	12	12483849	12483849	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	12483849	G	T	12483849	2	4	738	1	0	0	0	0	0	0	0	1	9231	1219	43	4		4	MANSC1	12	12483849	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	10543548	12483849	121368046	111	47526											
WBP11	51729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14943406	14943406	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	14943406	A	G	14943406	2	3	738	1	0	0	0	0	0	0	0	1	17270	291	11	3		3	WBP11	12	14943406	Silent	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	2459557	14943406	118908489	112	47527											
KCNH3	23416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	49944077	49944077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	49944077	A	C	49944077	3	2	738	1	0	0	0	0	1	0	0	0	8040	304	11	5	1921	5	KCNH3	12	49944077	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	35000671	49944077	83907818	113	47528											
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53554015	53554015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	53554015	T	C	53554015	3	2	738	1	0	0	0	0	1	0	0	0	3927	1609	56	3	442	3	CSAD	12	53554015	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	3609938	53554015	80297880	114	47529											
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	54756649	54756649	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	54756649	G	A	54756649	2	1	738	1	0	0	0	0	0	0	0	1	6721	1219	43	2		2	GPR84	12	54756649	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1202634	54756649	79095246	115	47530											
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56578005	56578005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	56578005	G	T	56578005	3	4	738	1	0	0	0	0	1	0	0	0	14789	1368	48	4	3317	4	SMARCC2	12	56578005	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1821356	56578005	77273890	116	47531											
R3HDM2	22864	ucsc.edu;bcgsc.ca	37	12	57674168	57674168	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	57674168	T	C	57674168	2	2	738	1	0	0	0	0	0	0	0	1	12901	1683	59	3		3	R3HDM2	12	57674168	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	1096163	57674168	76177727	117	47532											
METTL1	4234	broad.mit.edu;bcgsc.ca	37	12	58165807	58165807	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	58165807	G	A	58165807	2	1	738	1	0	0	0	0	0	0	0	1	9500	1024	36	2		2	METTL1	12	58165807	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	491639	58165807	75686088	118	47533											
APAF1	317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99093184	99093184	+	Splice_Site	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	99093184	A	C	99093184	5	2	738	1	0	0	0	0	0	0	1	0	755	86	3	5	2365	5	APAF1	12	99093184	Splice_Site	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	40927377	99093184	34758711	119	47534											
DAO	1610	broad.mit.edu	37	12	109290784	109290784	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	109290784	G	T	109290784	2	4	738	1	0	0	0	0	0	0	0	1	4233	1335	47	4		4	DAO	12	109290784	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	10197600	109290784	24561111	120	47535											
LHX5	64211	hgsc.bcm.edu	37	12	113901232	113901232	+	Silent	SNP	T	T	C	rs202131487		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	113901232	T	C	113901232	2	2	738	1	0	0	0	0	0	0	0	1	8781	1538	54	3		3	LHX5	12	113901232	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	4610448	113901232	19950663	121	47536											
MLEC	9761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121132908	121132908	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	121132908	A	-	121132908	7	5	738	1	0	1	0	1	0	0	0	0	9620	275	10	0	616	0	MLEC	12	121132908	Frame_Shift_Del	DEL	A	TCGA-P4-A5EB-01A-11D-A28G-10	7231676	121132908	12718987	122	47537											
CHFR	55743	broad.mit.edu	37	12	133430112	133430112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	133430112	G	T	133430112	3	4	738	1	0	0	0	0	1	0	0	0	3339	1087	38	4	713	4	CHFR	12	133430112	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	12297204	133430112	421783	123	47538											
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	36383187	36383187	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	36383187	A	G	36383187	2	3	738	1	0	0	0	0	0	0	0	1	4293	456	16	3		3	DCLK1	13	36383187	Silent	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10		36383187	78786691	124	47539											
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	96684163	96684163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	96684163	A	G	96684163	3	3	738	1	0	0	0	0	1	0	0	0	16954	372	13	3	4481	3	UGGT2	13	96684163	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	60300976	96684163	18485715	125	47540											
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21769308	21769308	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	21769308	C	T	21769308	2	4	738	1	0	0	0	0	0	0	0	1	13562	581	21	2		2	RPGRIP1	14	21769308	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		21769308	85580232	126	47541											
OXA1L	5018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23240479	23240479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	23240479	T	A	23240479	3	1	738	1	0	0	0	0	1	0	0	0	11335	1580	55	5	1319	5	OXA1L	14	23240479	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	1471171	23240479	84109061	127	47542											
EFS	10278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23828918	23828918	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	23828918	G	A	23828918	2	1	738	1	0	0	0	0	0	0	0	1	4961	933	33	2		2	EFS	14	23828918	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	588439	23828918	83520622	128	47543											
PPP2R5E	5529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	63881922	63881922	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	63881922	A	-	63881922	7	5	738	1	0	1	0	1	0	0	0	0	12406	131	5	0	958	0	PPP2R5E	14	63881922	Frame_Shift_Del	DEL	A	TCGA-P4-A5EB-01A-11D-A28G-10	40053004	63881922	43467618	129	47544											
KIAA1737	85457	broad.mit.edu	37	14	77580242	77580242	+	Missense_Mutation	SNP	T	T	C	rs74069038		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	77580242	T	C	77580242	3	2	738	1	0	0	0	0	1	0	0	0	8262	1783	62	3	791	3	KIAA1737	14	77580242	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	13698320	77580242	29769298	130	47545											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102478240	102478240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	102478240	T	C	102478240	3	2	738	1	0	0	0	0	1	0	0	0	4843	1435	50	3	6777	3	DYNC1H1	14	102478240	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	24897998	102478240	4871300	131	47546											
PACS2	23241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105833603	105833603	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	105833603	C	T	105833603	2	4	738	1	0	0	0	0	0	0	0	1	11380	816	29	2		2	PACS2	14	105833603	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	3355363	105833603	1515937	132	47547											
HERC2	8924	broad.mit.edu;ucsc.edu	37	15	28437274	28437274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	28437274	G	C	28437274	3	2	738	1	0	0	0	0	1	0	0	0	7065	1116	39	4	6384	4	HERC2	15	28437274	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		28437274	74094118	133	47548											
TRIM69	140691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45048565	45048565	+	Splice_Site	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	45048565	G	C	45048565	5	2	738	1	0	0	0	0	0	0	1	0	16554	1014	35	4	493	4	TRIM69	15	45048565	Splice_Site	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	16611291	45048565	57482827	134	47549											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	48748937	48748937	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	48748937	G	T	48748937	2	4	738	1	0	0	0	0	0	0	0	1	5709	1164	41	4		4	FBN1	15	48748937	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	3700372	48748937	53782455	135	47550											
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65494241	65494241	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	65494241	C	A	65494241	2	1	738	1	0	0	0	0	0	0	0	1	3431	813	29	4		4	CILP	15	65494241	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	16745304	65494241	37037151	136	47551											
SLC24A1	9187	bcgsc.ca	37	15	65917018	65917018	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	65917018	C	A	65917018	4	1	738	1	0	0	0	0	0	1	0	0	14478	547	19	4		4	SLC24A1	15	65917018	Nonsense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	422777	65917018	36614374	137	47552											
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	91811781	91811781	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	91811781	T	A	91811781	3	1	738	1	0	0	0	0	1	0	0	0	15430	1435	50	5	1349	5	SV2B	15	91811781	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	25894763	91811781	10719611	138	47553											
PGPEP1L	145814	hgsc.bcm.edu	37	15	99544418	99544418	+	Missense_Mutation	SNP	C	C	T	rs149174294		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	99544418	C	T	99544418	3	4	738	1	0	0	0	0	1	0	0	0	11811	536	19	1	587	1	PGPEP1L	15	99544418	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	7732637	99544418	2986974	139	47554											
WFIKKN1	117166	broad.mit.edu	37	16	683832	683832	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	683832	C	A	683832	2	1	738	1	0	0	0	0	0	0	0	1	17370	697	25	4		4	WFIKKN1	16	683832	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		683832	89670921	140	47555											
RPL3L	6123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1995884	1995884	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	1995884	C	T	1995884	2	4	738	1	0	0	0	0	0	0	0	1	13607	813	29	2		2	RPL3L	16	1995884	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	1312052	1995884	88358869	141	47556											
PKMYT1	9088	hgsc.bcm.edu	37	16	3025761	3025761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	3025761	G	A	3025761	3	1	738	1	0	0	0	0	1	0	0	0	11985	1348	47	2	1130	2	PKMYT1	16	3025761	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1029877	3025761	87328992	142	47557											
NLRC3	197358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3614323	3614323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	3614323	G	C	3614323	3	2	738	1	0	0	0	0	1	0	0	0	10475	1194	42	4	2647	4	NLRC3	16	3614323	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	588562	3614323	86740430	143	47558											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu	37	16	3779018	3779018	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	3779018	C	T	3779018	2	4	738	1	0	0	0	0	0	0	0	1	3863	726	26	2		2	CREBBP	16	3779018	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	164695	3779018	86575735	144	47559											
ERN2	10595	broad.mit.edu;ucsc.edu	37	16	23713536	23713536	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	23713536	C	T	23713536	2	4	738	1	0	0	0	0	0	0	0	1	5240	581	21	2		2	ERN2	16	23713536	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	19934518	23713536	66641217	145	47560											
CETP	1071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57012127	57012127	+	Missense_Mutation	SNP	G	G	A	rs144949752		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	57012127	G	A	57012127	3	1	738	1	0	0	0	0	1	0	0	0	3279	1087	38	1	1148	1	CETP	16	57012127	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	33298591	57012127	33342626	146	47561											
DHRS7C	201140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	9683157	9683157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	9683157	T	A	9683157	3	1	738	1	0	0	0	0	1	0	0	0	4499	1464	51	5	488	5	DHRS7C	17	9683157	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10		9683157	71512053	147	47562											
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	13980322	13980322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	13980322	G	C	13980322	3	2	738	1	0	0	0	0	1	0	0	0	3764	1029	36	4	458	4	COX10	17	13980322	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4297165	13980322	67214888	148	47563											
SLFN12L	100506736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	33807110	33807110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	33807110	G	A	33807110	3	1	738	1	0	0	0	0	1	0	0	0	14748	1029	36	2	1659	2	SLFN12L	17	33807110	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	19826788	33807110	47388100	149	47564											
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39596920	39596920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	39596920	A	C	39596920	3	2	738	1	0	0	0	0	1	0	0	0	8482	101	4	5	1144	5	KRT38	17	39596920	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	5789810	39596920	41598290	150	47565											
JUP	3728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39925817	39925817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	39925817	C	G	39925817	3	3	738	1	0	0	0	0	1	0	0	0	7979	680	24	4	1964	4	JUP	17	39925817	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	328897	39925817	41269393	151	47566											
STAT5A	6776	broad.mit.edu	37	17	40452261	40452262	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	40452262	-	G	40452261	7	5	738	1	0	1	1	0	0	0	0	0	15280	755	27	0	817	0	STAT5A	17	40452261	Frame_Shift_Ins	INS	-	TCGA-P4-A5EB-01A-11D-A28G-10	526444	40452261	40742949	152	47567											
ERN1	2081	broad.mit.edu	37	17	62152600	62152600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	62152600	G	A	62152600	3	1	738	1	0	0	0	0	1	0	0	0	5239	1000	35	2	2715	2	ERN1	17	62152600	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	21700339	62152600	19042610	153	47568											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65105385	65105385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	65105385	C	T	65105385	3	4	738	1	0	0	0	0	1	0	0	0	7056	922	32	2	1512	2	HELZ	17	65105385	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	2952785	65105385	16089825	154	47569											
EXOC7	23265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	74081440	74081440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	74081440	G	A	74081440	3	1	738	1	0	0	0	0	1	0	0	0	5312	1174	41	2	407	2	EXOC7	17	74081440	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	8976055	74081440	7113770	155	47570											
RNF138	51444	broad.mit.edu	37	18	29709106	29709106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	29709106	C	A	29709106	3	1	738	1	0	0	0	0	1	0	0	0	13454	595	21	4	720	4	RNF138	18	29709106	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		29709106	48368142	156	47571											
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	42533244	42533244	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	42533244	C	T	42533244	2	4	738	1	0	0	0	0	0	0	0	1	14142	477	17	2		2	SETBP1	18	42533244	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	12824138	42533244	35544004	157	47572											
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5286082	5286082	+	Missense_Mutation	SNP	C	C	A	rs200430287	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	5286082	C	A	5286082	3	1	738	1	0	0	0	0	1	0	0	0	12824	536	19	4	5924	4	PTPRS	19	5286082	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		5286082	53842901	158	47573											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610178	10610178	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	10610178	G	A	10610178	4	1	738	1	0	0	0	0	0	1	0	0	8148	1328	46	2	1362	2	KEAP1	19	10610178	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	5324096	10610178	48518805	159	47574											
BRD4	23476	bcgsc.ca	37	19	15353721	15353721	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	15353721	G	T	15353721	2	4	738	1	0	0	0	0	0	0	0	1	1506	987	35	4		4	BRD4	19	15353721	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4743543	15353721	43775262	160	47575											
TSHZ3	57616	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31769094	31769094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	31769094	G	T	31769094	3	4	738	1	0	0	0	0	1	0	0	0	16637	1368	48	4	1644	4	TSHZ3	19	31769094	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	16415373	31769094	27359889	161	47576											
SLC7A9	11136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	33350841	33350841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	G	33350841	A	G	33350841	3	3	738	1	0	0	0	0	1	0	0	0	14718	333	12	3	708	3	SLC7A9	19	33350841	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	1581747	33350841	25778142	162	47577											
CEBPA	1050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	33793108	33793108	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	33793108	G	T	33793108	2	4	738	1	0	0	0	0	0	0	0	1	3201	1103	39	4		4	CEBPA	19	33793108	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	442267	33793108	25335875	163	47578			1	160		2	2	13	G		7.093532e-05
CEBPA	1050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	33793120	33793120	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	33793120	G	T	33793120	4	4	738	1	0	0	0	0	0	1	0	0	3201	1372	48	4	879	4	CEBPA	19	33793120	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	12	33793120	25335863	164	47579			1	160		2	2	13	G		7.093532e-05
WTIP	126374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34991065	34991065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	34991065	G	A	34991065	3	1	738	1	0	0	0	0	1	0	0	0	17422	1174	41	2	1214	2	WTIP	19	34991065	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1197945	34991065	24137918	165	47580											
LSR	51599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35758028	35758028	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	35758028	C	A	35758028	2	1	738	1	0	0	0	0	0	0	0	1	9071	668	24	4		4	LSR	19	35758028	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	766963	35758028	23370955	166	47581											
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36279064	36279064	+	Silent	SNP	C	C	T	rs182833371		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	36279064	C	T	36279064	2	4	738	1	0	0	0	0	0	0	0	1	882	639	23	1		1	ARHGAP33	19	36279064	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	521036	36279064	22849919	167	47582											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40357745	40357745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	40357745	G	T	40357745	3	4	738	1	0	0	0	0	1	0	0	0	5785	962	34	4	661	4	FCGBP	19	40357745	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4078681	40357745	18771238	168	47583											
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50412996	50412996	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	50412996	C	T	50412996	2	4	738	1	0	0	0	0	0	0	0	1	10775	639	23	1		1	NUP62	19	50412996	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	10055251	50412996	8715987	169	47584											
MBOAT7	79143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54687463	54687463	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	54687463	T	A	54687463	3	1	738	1	0	0	0	0	1	0	0	0	9365	1667	58	5	1004	5	MBOAT7	19	54687463	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	4274467	54687463	4441520	170	47585											
PTPRH	5794	broad.mit.edu	37	19	55716805	55716805	+	Missense_Mutation	SNP	G	G	A	rs200319382		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	55716805	G	A	55716805	3	1	738	1	0	0	0	0	1	0	0	0	12816	1377	48	2	2907	2	PTPRH	19	55716805	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1029342	55716805	3412178	171	47586											
ZNF814	730051	bcgsc.ca	37	19	58385280	58385281	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	58385281	TG	-	58385280	7	5	738	1	0	1	0	1	0	0	0	0	18188	1580	55	0	1093	0	ZNF814	19	58385280	Frame_Shift_Del	DEL	TG	TCGA-P4-A5EB-01A-11D-A28G-10	2668475	58385280	743703	172	47587											
KCNK15	60598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43378853	43378853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	43378853	G	A	43378853	3	1	738	1	0	0	0	0	1	0	0	0	8069	1261	44	2	373	2	KCNK15	20	43378853	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		43378853	19646667	173	47588											
EYA2	2139	bcgsc.ca	37	20	45801422	45801422	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	C	45801422	G	C	45801422	3	2	738	1	0	0	0	0	1	0	0	0	5331	1348	47	4	1147	4	EYA2	20	45801422	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	2422569	45801422	17224098	174	47589											
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15554119	15554119	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	15554119	C	T	15554119	2	4	738	1	0	0	0	0	0	0	0	1	8832	639	23	1		1	LIPI	21	15554119	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		15554119	32575776	175	47590											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22906941	22906941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	22906941	A	T	22906941	3	4	738	1	0	0	0	0	1	0	0	0	10210	101	4	5	2432	5	NCAM2	21	22906941	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	7352822	22906941	25222954	176	47591											
PLAC4	191585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	42551431	42551431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	42551431	C	T	42551431	3	4	738	1	0	0	0	0	1	0	0	0	12021	913	32	2	331	2	PLAC4	21	42551431	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	19644490	42551431	5578464	177	47592											
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	29885562	G	A	29885562	3	1	738	1	0	0	0	0	1	0	0	0	10321	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		29885562	21419004	178	47593											
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	51160316	51160316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	51160316	C	T	51160316	3	4	738	1	0	0	0	0	1	0	0	0	14279	710	25	2	4189	2	SHANK3	22	51160316	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	21274754	51160316	144250	179	47594											
OFD1	8481	hgsc.bcm.edu;bcgsc.ca	37	X	13762547	13762547	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	13762547	T	-	13762547	7	5	738	1	0	1	0	1	0	0	0	0	10845	1490	52	0	448	0	OFD1	23	13762547	Frame_Shift_Del	DEL	T	TCGA-P4-A5EB-01A-11D-A28G-10		13762547	141508013	180	47595											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	32305751	32305751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	32305751	G	T	32305751	3	4	738	1	0	0	0	0	1	0	0	0	4582	1319	46	4	5168	4	DMD	23	32305751	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	18543204	32305751	122964809	181	47596											
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50658768	50658768	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	T	50658768	A	T	50658768	3	4	738	1	0	0	0	0	1	0	0	0	1458	449	16	5	346	5	BMP15	23	50658768	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	18353017	50658768	104611792	182	47597											
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	56592091	56592092	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	56592092	AA	-	56592091	7	5	738	1	0	1	0	1	0	0	0	0	16909	359	13	0	1787	0	UBQLN2	23	56592091	Frame_Shift_Del	DEL	AA	TCGA-P4-A5EB-01A-11D-A28G-10	5933323	56592091	98678469	183	47598											
UPRT	139596	hgsc.bcm.edu;bcgsc.ca	37	X	74494317	74494318	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	-	74494318	AG	-	74494317	7	5	738	1	0	1	0	1	0	0	0	0	17026	175	7	0	230	0	UPRT	23	74494317	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EB-01A-11D-A28G-10	17902226	74494317	80776243	184	47599											
ATRX	546	bcgsc.ca	37	X	76777834	76777834	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	A	76777834	C	A	76777834	2	1	738	1	0	0	0	0	0	0	0	1	1208	842	30	4		4	ATRX	23	76777834	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	2283517	76777834	78492726	185	47600											
TNFRSF25	8718	broad.mit.edu	37	1	6522060	6522060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	6522060	C	A	6522060	3	1	739	1	0	0	0	0	1	0	0	0	16308	797	28	4	342	4	TNFRSF25	1	6522060	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		6522060	242728561	1	47601											
DCLRE1B	64858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114454514	114454514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	114454514	C	T	114454514	3	4	739	1	0	0	0	0	1	0	0	0	4297	710	25	2	1314	2	DCLRE1B	1	114454514	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	107932454	114454514	134796107	2	47602											
ACP6	51205	broad.mit.edu	37	1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	rs201678741		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	147142085	A	C	147142085	3	2	739	1	0	0	0	0	1	0	0	0	165	159	6	5	1240	5	ACP6	1	147142085	Missense_Mutation	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10	32687571	147142085	102108536	3	47603											
MTA3	57504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	42886918	42886918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	42886918	C	A	42886918	3	1	739	1	0	0	0	0	1	0	0	0	9917	883	31	4	648	4	MTA3	2	42886918	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		42886918	200312455	4	47604											
WDSUB1	151525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160139417	160139417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	160139417	T	C	160139417	3	2	739	1	0	0	0	0	1	0	0	0	17353	1406	49	3	1306	3	WDSUB1	2	160139417	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	117252499	160139417	83059956	5	47605											
SF3B1	23451	ucsc.edu	37	2	198270048	198270048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	198270048	T	C	198270048	3	2	739	1	0	0	0	0	1	0	0	0	14162	1493	52	3	2590	3	SF3B1	2	198270048	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	38130631	198270048	44929325	6	47606											
ING5	84289	broad.mit.edu	37	2	242664404	242664404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	242664404	G	T	242664404	3	4	739	1	0	0	0	0	1	0	0	0	7746	1275	44	4	711	4	ING5	2	242664404	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	44394356	242664404	534969	7	47607											
ETV5	2119	broad.mit.edu	37	3	185797720	185797720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	185797720	T	G	185797720	3	3	739	1	0	0	0	0	1	0	0	0	5284	1464	51	5	1024	5	ETV5	3	185797720	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10		185797720	12224710	8	47608											
MUC4	4585	bcgsc.ca	37	3	195512213	195512213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	195512213	G	A	195512213	3	1	739	1	0	0	0	0	1	0	0	0	9985	1232	43	2		2	MUC4	3	195512213	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	9714493	195512213	2510217	9	47609											
DOK7	285489	broad.mit.edu	37	4	3494664	3494664	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	3494664	A	C	3494664	2	2	739	1	0	0	0	0	0	0	0	1	4704	146	6	5		5	DOK7	4	3494664	Silent	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10		3494664	187659612	10	47610											
BST1	683	hgsc.bcm.edu	37	4	15704874	15704874	+	Missense_Mutation	SNP	G	G	C	rs2302468		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	15704874	G	C	15704874	3	2	739	1	0	0	0	0	1	0	0	0	1535	1232	43	4	109	4	BST1	4	15704874	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	12210210	15704874	175449402	11	47611											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	85675021	85675021	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	85675021	T	C	85675021	2	2	739	1	0	0	0	0	0	0	0	1	17282	1490	52	3		3	WDFY3	4	85675021	Silent	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	69970147	85675021	105479255	12	47612											
MTRR	4552	broad.mit.edu	37	5	7878351	7878351	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	7878351	A	C	7878351	2	2	739	1	0	0	0	0	0	0	0	1	9968	378	14	5		5	MTRR	5	7878351	Silent	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10		7878351	173036909	13	47613											
SNX2	6643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	122154607	122154607	+	Silent	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	122154607	T	G	122154607	2	3	739	1	0	0	0	0	0	0	0	1	14904	1799	63	5		5	SNX2	5	122154607	Silent	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	114276256	122154607	58760653	14	47614											
ARHGAP26	23092	broad.mit.edu	37	5	142281554	142281554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	142281554	G	A	142281554	3	1	739	1	0	0	0	0	1	0	0	0	875	1203	42	2	678	2	ARHGAP26	5	142281554	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	20126947	142281554	38633706	15	47615											
NKX2-5	1482	broad.mit.edu	37	5	172659730	172659730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	172659730	C	A	172659730	3	1	739	1	0	0	0	0	1	0	0	0	10460	768	27	4	161	4	NKX2-5	5	172659730	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	30378176	172659730	8255530	16	47616											
SERPINB6	5269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	2955761	2955761	+	Silent	SNP	G	G	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	2955761	G	C	2955761	2	2	739	1	0	0	0	0	0	0	0	1	14118	929	33	4		4	SERPINB6	6	2955761	Silent	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		2955761	168159306	17	47617											
SRRT	51593	broad.mit.edu	37	7	100482130	100482130	+	Missense_Mutation	SNP	G	G	A	rs140745082		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	100482130	G	A	100482130	3	1	739	1	0	0	0	0	1	0	0	0	15184	1087	38	1	921	1	SRRT	7	100482130	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		100482130	58656533	18	47618											
SGK223	0	broad.mit.edu	37	8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	8239069	C	A	8239069	3	1	739	1	0	0	0	0	1	0	0	0	14223	738	26	4	4039	4	SGK223	8	8239069	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		8239069	138124953	19	47619											
TERF1	7013	broad.mit.edu;bcgsc.ca	37	8	73926211	73926211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	73926211	C	G	73926211	3	3	739	1	0	0	0	0	1	0	0	0	15773	710	25	4	407	4	TERF1	8	73926211	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	65687142	73926211	72437811	20	47620											
NBN	4683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	90967743	90967743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	90967743	T	C	90967743	3	2	739	1	0	0	0	0	1	0	0	0	10198	1493	52	3	1127	3	NBN	8	90967743	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	17041532	90967743	55396279	21	47621											
FREM1	158326	broad.mit.edu	37	9	14770686	14770686	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	14770686	G	T	14770686	4	4	739	1	0	0	0	0	0	1	0	0	6051	1294	45	4	1611	4	FREM1	9	14770686	Nonsense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		14770686	126442745	22	47622											
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	32633310	32633310	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	32633310	G	A	32633310	2	1	739	1	0	0	0	0	0	0	0	1	15535	1190	42	2		2	TAF1L	9	32633310	Silent	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	17862624	32633310	108580121	23	47623											
DCAF10	79269	hgsc.bcm.edu	37	9	37800965	37800965	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	37800965	G	T	37800965	2	4	739	1	0	0	0	0	0	0	0	1	4263	1074	38	4		4	DCAF10	9	37800965	Silent	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	5167655	37800965	103412466	24	47624											
STX17	55014	broad.mit.edu	37	9	102730843	102730843	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	102730843	T	G	102730843	3	3	739	1	0	0	0	0	1	0	0	0	15352	1696	59	5	823	5	STX17	9	102730843	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	64929878	102730843	38482588	25	47625											
TM7SF2	7108	hgsc.bcm.edu	37	11	64880061	64880061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	64880061	C	T	64880061	3	4	739	1	0	0	0	0	1	0	0	0	15986	768	27	1	133	1	TM7SF2	11	64880061	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		64880061	70126455	26	47626											
B3GNT6	192134	hgsc.bcm.edu	37	11	76751497	76751497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	76751497	A	G	76751497	3	3	739	1	0	0	0	0	1	0	0	0	1261	159	6	3	904	3	B3GNT6	11	76751497	Missense_Mutation	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10	11871436	76751497	58255019	27	47627											
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123476178	123476178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	123476178	C	T	123476178	3	4	739	1	0	0	0	0	1	0	0	0	6755	623	22	2	920	2	GRAMD1B	11	123476178	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	46724681	123476178	11530338	28	47628											
CLEC2D	29121	broad.mit.edu;bcgsc.ca	37	12	9840539	9840539	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	9840539	C	G	9840539	3	3	739	1	0	0	0	0	1	0	0	0	3510	827	29	4	224	4	CLEC2D	12	9840539	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		9840539	124011356	29	47629											
B4GALNT1	2583	broad.mit.edu	37	12	58021430	58021430	+	Silent	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	58021430	T	G	58021430	2	3	739	1	0	0	0	0	0	0	0	1	1266	1667	58	5		5	B4GALNT1	12	58021430	Silent	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	48180891	58021430	75830465	30	47630											
CUX2	23316	broad.mit.edu	37	12	111757856	111757856	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	111757856	C	T	111757856	2	4	739	1	0	0	0	0	0	0	0	1	4067	535	19	1		1	CUX2	12	111757856	Silent	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	53736426	111757856	22094039	31	47631											
BRAP	8315	hgsc.bcm.edu;broad.mit.edu	37	12	112096635	112096635	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	112096635	G	A	112096635	4	1	739	1	0	0	0	0	0	1	0	0	1499	1066	37	1	668	1	BRAP	12	112096635	Nonsense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	338779	112096635	21755260	32	47632											
MED13L	23389	ucsc.edu	37	12	116428913	116428913	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	116428913	C	T	116428913	2	4	739	1	0	0	0	0	0	0	0	1	9438	726	26	2		2	MED13L	12	116428913	Silent	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	4332278	116428913	17422982	33	47633											
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81969202	81969202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	81969202	C	T	81969202	3	4	739	1	0	0	0	0	1	0	0	0	14023	797	28	2	1808	2	SEL1L	14	81969202	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		81969202	25380338	34	47634											
IGDCC3	9543	broad.mit.edu	37	15	65628245	65628245	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	65628245	A	G	65628245	2	3	739	1	0	0	0	0	0	0	0	1	7575	146	6	3		3	IGDCC3	15	65628245	Silent	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10		65628245	36903147	35	47635											
ACAN	176	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89398215	89398215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	89398215	C	T	89398215	3	4	739	1	0	0	0	0	1	0	0	0	117	855	30	2	2441	2	ACAN	15	89398215	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	23769970	89398215	13133177	36	47636											
HS3ST4	9951	broad.mit.edu;bcgsc.ca	37	16	26147018	26147018	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	-	26147018	A	-	26147018	7	5	739	1	0	1	0	1	0	0	0	0	7374	217	8	0	826	0	HS3ST4	16	26147018	Frame_Shift_Del	DEL	A	TCGA-P4-A5ED-01A-11D-A28G-10		26147018	64207735	37	47637	705	2									
HS3ST4	9951	broad.mit.edu;bcgsc.ca	37	16	26147021	26147023	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	-	26147023	CAC	-	26147021	7	5	739	1	0	1	0	1	0	0	0	0	7374	826	29	0	829	0	HS3ST4	16	26147021	In_Frame_Del	DEL	CAC	TCGA-P4-A5ED-01A-11D-A28G-10	3	26147021	64207732	38	47638	705	2									
MYBBP1A	10514	broad.mit.edu	37	17	4445773	4445773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	4445773	G	A	4445773	3	1	739	1	0	0	0	0	1	0	0	0	10015	1086	38	1	973	1	MYBBP1A	17	4445773	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		4445773	76749437	39	47639											
SUPT6H	6830	ucsc.edu	37	17	27002024	27002024	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	27002024	G	C	27002024	3	2	739	1	0	0	0	0	1	0	0	0	15412	1059	37	4	396	4	SUPT6H	17	27002024	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	22556251	27002024	54193186	40	47640											
KIF19	124602	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72340927	72340927	+	Silent	SNP	C	C	A	rs146234533	alternate_allele	TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	72340927	C	A	72340927	2	1	739	1	0	0	0	0	0	0	0	1	8289	643	23	4		4	KIF19	17	72340927	Silent	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	45338903	72340927	8854283	41	47641											
BTBD2	55643	broad.mit.edu	37	19	1986958	1986958	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	1986958	G	A	1986958	2	1	739	1	0	0	0	0	0	0	0	1	1545	1310	46	2		2	BTBD2	19	1986958	Silent	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		1986958	57142025	42	47642											
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	34710315	T	G	34710315	2	3	739	1	0	0	0	0	0	0	0	1	9061	1538	54	5		5	LSM14A	19	34710315	Silent	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	32723357	34710315	24418668	43	47643											
RYR1	6261	broad.mit.edu	37	19	38995663	38995663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	C	38995663	T	C	38995663	3	2	739	1	0	0	0	0	1	0	0	0	13781	1580	55	3	8458	3	RYR1	19	38995663	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	4285348	38995663	20133320	44	47644											
ZNF628	89887	hgsc.bcm.edu	37	19	55993264	55993264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	55993264	C	T	55993264	3	4	739	1	0	0	0	0	1	0	0	0	18064	739	26	2	694	2	ZNF628	19	55993264	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	16997601	55993264	3135719	45	47645											
SLCO4A1	28231	broad.mit.edu	37	20	61288357	61288357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	T	61288357	C	T	61288357	3	4	739	1	0	0	0	0	1	0	0	0	14742	893	31	1	553	1	SLCO4A1	20	61288357	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		61288357	1737163	46	47646											
TOP3B	8940	broad.mit.edu	37	22	22318552	22318552	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	G	22318552	T	G	22318552	3	3	739	1	0	0	0	0	1	0	0	0	16380	1696	59	5	1545	5	TOP3B	22	22318552	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10		22318552	28986014	47	47647											
RNF128	79589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	106034465	106034465	+	Splice_Site	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	A	106034465	G	A	106034465	5	1	739	1	0	0	0	0	0	0	1	0	13449	1043	36	2	1586	2	RNF128	23	106034465	Splice_Site	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		106034465	49236095	48	47648											
SKI	6497	hgsc.bcm.edu	37	1	2238153	2238153	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	2238153	G	A	2238153	2	1	740	1	0	0	0	0	0	0	0	1	14370	1219	43	2		2	SKI	1	2238153	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10		2238153	247012468	1	47649											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27101241	27101241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	27101241	A	G	27101241	3	3	740	1	0	0	0	0	1	0	0	0	913	449	16	3	4593	3	ARID1A	1	27101241	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	24863088	27101241	222149380	2	47650											
DLGAP3	58512	hgsc.bcm.edu	37	1	35331687	35331687	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	35331687	C	T	35331687	2	4	740	1	0	0	0	0	0	0	0	1	4563	465	17	2		2	DLGAP3	1	35331687	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	8230446	35331687	213918934	3	47651											
INADL	10207	broad.mit.edu	37	1	62271195	62271195	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	62271195	T	A	62271195	3	1	740	1	0	0	0	0	1	0	0	0	7738	1478	51	5	1671	5	INADL	1	62271195	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	26939508	62271195	186979426	4	47652											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145567075	145567075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	145567075	C	T	145567075	3	4	740	1	0	0	0	0	1	0	0	0	664	826	29	2	2969	2	ANKRD35	1	145567075	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	83295880	145567075	103683546	5	47653											
PKP1	5317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201285751	201285751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	201285751	G	A	201285751	3	1	740	1	0	0	0	0	1	0	0	0	11991	1174	41	2	786	2	PKP1	1	201285751	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	55718676	201285751	47964870	6	47654											
LEFTY1	10637	broad.mit.edu;bcgsc.ca	37	1	226075306	226075306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	226075306	G	T	226075306	3	4	740	1	0	0	0	0	1	0	0	0	8722	1203	42	4	578	4	LEFTY1	1	226075306	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	24789555	226075306	23175315	7	47655											
TAF5L	27097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229730727	229730727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	229730727	C	T	229730727	3	4	740	1	0	0	0	0	1	0	0	0	15541	913	32	2	686	2	TAF5L	1	229730727	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	3655421	229730727	19519894	8	47656											
SH3BP5L	80851	hgsc.bcm.edu	37	1	249106348	249106348	+	Silent	SNP	G	G	C	rs202116012		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	C	249106348	G	C	249106348	2	2	740	1	0	0	0	0	0	0	0	1	14261	1103	39	4		4	SH3BP5L	1	249106348	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	19375621	249106348	144273	9	47657											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	37286106	37286107	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	37286107	-	A	37286106	7	5	740	1	0	1	1	0	0	0	0	0	7039	478	17	0	4437	0	HEATR5B	2	37286106	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10		37286106	205913267	10	47658											
GKN1	56287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69207170	69207170	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	69207170	A	G	69207170	2	3	740	1	0	0	0	0	0	0	0	1	6431	204	8	3		3	GKN1	2	69207170	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	31921064	69207170	173992203	11	47659											
SMYD5	10322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73447218	73447218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	73447218	A	G	73447218	3	3	740	1	0	0	0	0	1	0	0	0	14838	304	11	3	255	3	SMYD5	2	73447218	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	4240048	73447218	169752155	12	47660											
IMMT	10989	broad.mit.edu;bcgsc.ca	37	2	86371928	86371928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	86371928	C	A	86371928	3	1	740	1	0	0	0	0	1	0	0	0	7725	826	29	4	540	4	IMMT	2	86371928	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	12924710	86371928	156827445	13	47661											
LYG2	254773	broad.mit.edu	37	2	99861727	99861727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	99861727	G	T	99861727	3	4	740	1	0	0	0	0	1	0	0	0	9112	1328	46	4	271	4	LYG2	2	99861727	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	13489799	99861727	143337646	14	47662											
POLR1B	84172	broad.mit.edu;bcgsc.ca	37	2	113330280	113330285	+	In_Frame_Del	DEL	CCAATG	CCAATG	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	CCAATG	CCAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	113330285	CCAATG	-	113330280	7	5	740	1	0	1	0	1	0	0	0	0	12217	507	18	0	2266	0	POLR1B	2	113330280	In_Frame_Del	DEL	CCAATG	TCGA-PJ-A5Z8-01A-11D-A28G-10	13468553	113330280	129869093	15	47663											
DCAF17	80067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	172333421	172333421	+	Silent	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	172333421	T	A	172333421	2	1	740	1	0	0	0	0	0	0	0	1	4271	1567	55	5		5	DCAF17	2	172333421	Silent	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	59003141	172333421	70865952	16	47664											
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190437577	190437577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	190437577	C	A	190437577	3	1	740	1	0	0	0	0	1	0	0	0	14641	507	18	4	1353	4	SLC40A1	2	190437577	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	18104156	190437577	52761796	17	47665											
GLS	2744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191795284	191795284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	191795284	A	G	191795284	3	3	740	1	0	0	0	0	1	0	0	0	6470	159	6	3	1597	3	GLS	2	191795284	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	1357707	191795284	51404089	18	47666											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197791195	197791195	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	197791195	T	A	197791195	3	1	740	1	0	0	0	0	1	0	0	0	11784	1594	55	5	2730	5	PGAP1	2	197791195	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	5995911	197791195	45408178	19	47667											
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201438489	201438489	+	Silent	SNP	T	T	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	201438489	T	G	201438489	2	3	740	1	0	0	0	0	0	0	0	1	14230	1567	55	5		5	SGOL2	2	201438489	Silent	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	3647294	201438489	41760884	20	47668											
VPS8	23355	broad.mit.edu;bcgsc.ca	37	3	184612489	184612503	+	Frame_Shift_Del	DEL	AGGGATCTTTTATTT	AGGGATCTTTTATTT	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	AGGGATCTTTTATTT	AGGGATCTTTTATTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	184612503	AGGGATCTTTTATTT	-	184612489	7	5	740	1	0	1	0	1	0	0	0	0	17230	202	7	0	1862	0	VPS8	3	184612489	Frame_Shift_Del	DEL	AGGGATCTTTTATTT	TCGA-PJ-A5Z8-01A-11D-A28G-10		184612489	13409941	21	47669											
CPN2	1370	broad.mit.edu	37	3	194062032	194062032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	194062032	C	A	194062032	3	1	740	1	0	0	0	0	1	0	0	0	3812	797	28	4	241	4	CPN2	3	194062032	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	9449543	194062032	3960398	22	47670											
HPSE	10855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84240579	84240579	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	84240579	C	G	84240579	3	3	740	1	0	0	0	0	1	0	0	0	7351	564	20	4	1254	4	HPSE	4	84240579	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		84240579	106913697	23	47671											
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	94436380	94436380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	94436380	C	T	94436380	3	4	740	1	0	0	0	0	1	0	0	0	6779	681	24	2	2061	2	GRID2	4	94436380	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	10195801	94436380	96717896	24	47672											
ADH6	130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100129912	100129912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	100129912	T	A	100129912	3	1	740	1	0	0	0	0	1	0	0	0	312	1751	61	5	406	5	ADH6	4	100129912	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	5693532	100129912	91024364	25	47673											
LARP7	51574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113568519	113568519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	113568519	C	A	113568519	3	1	740	1	0	0	0	0	1	0	0	0	8640	711	25	4	833	4	LARP7	4	113568519	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	13438607	113568519	77585757	26	47674											
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	21751876	21751876	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	21751876	T	-	21751876	7	5	740	1	0	1	0	1	0	0	0	0	3100	1606	56	0	33	0	CDH12	5	21751876	Frame_Shift_Del	DEL	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		21751876	159163384	27	47675											
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75902074	75902074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	75902074	G	A	75902074	3	1	740	1	0	0	0	0	1	0	0	0	7822	1291	45	2	1349	2	IQGAP2	5	75902074	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	54150198	75902074	105013186	28	47676											
DDX41	51428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176940458	176940458	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	176940458	C	G	176940458	3	3	740	1	0	0	0	0	1	0	0	0	4363	710	25	4	770	4	DDX41	5	176940458	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	101038384	176940458	3974802	29	47677											
KDM1B	221656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	18218101	18218101	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	18218101	C	-	18218101	7	5	740	1	0	1	0	1	0	0	0	0	8130	900	32	0	1732	0	KDM1B	6	18218101	Frame_Shift_Del	DEL	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		18218101	152896966	30	47678											
FHL5	9457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	97053903	97053904	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	97053904	TG	-	97053903	7	5	740	1	0	1	0	1	0	0	0	0	5888	1464	51	0	470	0	FHL5	6	97053903	Frame_Shift_Del	DEL	TG	TCGA-PJ-A5Z8-01A-11D-A28G-10	78835802	97053903	74061164	31	47679											
SKAP2	8935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26894415	26894415	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	26894415	A	G	26894415	2	3	740	1	0	0	0	0	0	0	0	1	14369	214	8	3		3	SKAP2	7	26894415	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10		26894415	132244248	32	47680											
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	43484075	43484075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	43484075	C	A	43484075	3	1	740	1	0	0	0	0	1	0	0	0	7049	681	24	4	1338	4	HECW1	7	43484075	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	16589660	43484075	115654588	33	47681											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48563956	48563956	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	C	48563956	A	C	48563956	3	2	740	1	0	0	0	0	1	0	0	0	31	130	5	5	14207	5	ABCA13	7	48563956	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	5079881	48563956	110574707	34	47682											
LAMB1	3912	broad.mit.edu;bcgsc.ca	37	7	107592551	107592555	+	Frame_Shift_Del	DEL	TCACA	TCACA	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TCACA	TCACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	107592555	TCACA	-	107592551	7	5	740	1	0	1	0	1	0	0	0	0	8617	1667	58	0	2211	0	LAMB1	7	107592551	Frame_Shift_Del	DEL	TCACA	TCGA-PJ-A5Z8-01A-11D-A28G-10	59028595	107592551	51546112	35	47683	706	2									
LAMB1	3912	broad.mit.edu;bcgsc.ca	37	7	107592557	107592562	+	In_Frame_Del	DEL	TTCTGC	TTCTGC	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TTCTGC	TTCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	107592562	TTCTGC	-	107592557	7	5	740	1	0	1	0	1	0	0	0	0	8617	1725	60	0	2217	0	LAMB1	7	107592557	In_Frame_Del	DEL	TTCTGC	TCGA-PJ-A5Z8-01A-11D-A28G-10	6	107592557	51546106	36	47684	706	2									
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	7	149518182	149518182	+	Silent	SNP	C	C	T	rs199773714		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	149518182	C	T	149518182	2	4	740	1	0	0	0	0	0	0	0	1	15201	776	27	1		1	SSPO	7	149518182	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	41925625	149518182	9620481	37	47685											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151919708	151919708	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	151919708	T	-	151919708	7	5	740	1	0	1	0	1	0	0	0	0	9629	1667	58	0	11508	0	MLL3	7	151919708	Frame_Shift_Del	DEL	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	2401526	151919708	7218955	38	47686											
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	90936735	90936736	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	90936736	-	T	90936735	7	5	740	1	0	1	1	0	0	0	0	0	11297	680	24	0	647	0	OSGIN2	8	90936735	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10		90936735	55427287	39	47687											
EFR3A	23167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	132996502	132996502	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	132996502	T	G	132996502	3	3	740	1	0	0	0	0	1	0	0	0	4960	1461	51	5	1750	5	EFR3A	8	132996502	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	42059767	132996502	13367520	40	47688											
OC90	729330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133041425	133041426	+	Missense_Mutation	DNP	AC	AC	TT	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	TT	133041426	AC	TT	133041425	3	4	740	1	0	0	0	0	1	0	0	0	10821	173	6	5	408	5	OC90	8	133041425	Missense_Mutation	DNP	AC	TCGA-PJ-A5Z8-01A-11D-A28G-10	44923	133041425	13322597	41	47689											
ABCA2	20	hgsc.bcm.edu;bcgsc.ca	37	9	139907277	139907277	+	Silent	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	139907277	C	G	139907277	2	3	740	1	0	0	0	0	0	0	0	1	32	581	21	4		4	ABCA2	9	139907277	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		139907277	1306154	42	47690											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61833342	61833342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	61833342	C	A	61833342	3	1	740	1	0	0	0	0	1	0	0	0	622	826	29	4	6177	4	ANK3	10	61833342	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		61833342	73701405	43	47691											
ENTPD7	57089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101421214	101421214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	101421214	C	A	101421214	3	1	740	1	0	0	0	0	1	0	0	0	5146	855	30	4	26	4	ENTPD7	10	101421214	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	39587872	101421214	34113533	44	47692											
DNMBP	23268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101715503	101715503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	101715503	G	T	101715503	3	4	740	1	0	0	0	0	1	0	0	0	4676	1020	36	4	3061	4	DNMBP	10	101715503	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	294289	101715503	33819244	45	47693											
CYP17A1	1586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104590667	104590667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	104590667	C	T	104590667	3	4	740	1	0	0	0	0	1	0	0	0	4149	768	27	1	211	1	CYP17A1	10	104590667	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	2875164	104590667	30944080	46	47694											
CYP17A1	1586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104592776	104592776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	104592776	G	T	104592776	3	4	740	1	0	0	0	0	1	0	0	0	4149	991	35	4	599	4	CYP17A1	10	104592776	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	2109	104592776	30941971	47	47695											
GRK5	2869	broad.mit.edu;ucsc.edu	37	10	121212789	121212789	+	Splice_Site	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	121212789	G	A	121212789	5	1	740	1	0	0	0	0	0	0	1	0	6799	1275	44	2	1733	2	GRK5	10	121212789	Splice_Site	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	16620013	121212789	14321958	48	47696											
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	284253	284253	+	Missense_Mutation	SNP	A	A	G	rs150530901		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	284253	A	G	284253	3	3	740	1	0	0	0	0	1	0	0	0	10488	275	10	3	2247	3	NLRP6	11	284253	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10		284253	134722263	49	47697											
CTSD	1509	hgsc.bcm.edu	37	11	1785082	1785082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	1785082	G	A	1785082	3	1	740	1	0	0	0	0	1	0	0	0	4034	1232	43	2	1266	2	CTSD	11	1785082	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	1500829	1785082	133221434	50	47698											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	3789956	3789956	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	3789956	G	-	3789956	7	5	740	1	0	1	0	1	0	0	0	0	10780	1377	48	0	4775	0	NUP98	11	3789956	Frame_Shift_Del	DEL	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	2004874	3789956	131216560	51	47699											
MRGPRX4	117196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18195097	18195097	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	18195097	C	T	18195097	2	4	740	1	0	0	0	0	0	0	0	1	9776	871	31	1		1	MRGPRX4	11	18195097	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	14405141	18195097	116811419	52	47700											
LGALS12	85329	broad.mit.edu;bcgsc.ca	37	11	63283171	63283171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	63283171	C	A	63283171	3	1	740	1	0	0	0	0	1	0	0	0	8746	595	21	4	883	4	LGALS12	11	63283171	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	45088074	63283171	71723345	53	47701											
LRP5	4041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	68181318	68181318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	68181318	G	T	68181318	3	4	740	1	0	0	0	0	1	0	0	0	8967	1145	40	4	2711	4	LRP5	11	68181318	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	4898147	68181318	66825198	54	47702											
VWF	7450	ucsc.edu;bcgsc.ca	37	12	6090996	6090996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	6090996	T	G	6090996	3	3	740	1	0	0	0	0	1	0	0	0	17258	1696	59	5	1242	5	VWF	12	6090996	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		6090996	127760899	55	47703											
DNAJC14	85406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56217194	56217194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	56217194	C	G	56217194	3	3	740	1	0	0	0	0	1	0	0	0	4635	564	20	4	622	4	DNAJC14	12	56217194	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	50126198	56217194	77634701	56	47704											
RDH16	8608	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57346721	57346721	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	57346721	A	-	57346721	7	5	740	1	0	1	0	1	0	0	0	0	13207	246	9	0	335	0	RDH16	12	57346721	Frame_Shift_Del	DEL	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	1129527	57346721	76505174	57	47705											
MON2	23041	hgsc.bcm.edu;broad.mit.edu	37	12	62954348	62954349	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	62954349	-	T	62954348	7	5	740	1	0	1	1	0	0	0	0	0	9707	912	32	0	3589	0	MON2	12	62954348	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	5607627	62954348	70897547	58	47706											
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113610195	113610195	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	113610195	G	A	113610195	2	1	740	1	0	0	0	0	0	0	0	1	4374	962	34	2		2	DDX54	12	113610195	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	50655847	113610195	20241700	59	47707											
RIMBP2	23504	broad.mit.edu	37	12	130926698	130926698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	130926698	G	A	130926698	3	1	740	1	0	0	0	0	1	0	0	0	13376	1145	40	1	2058	1	RIMBP2	12	130926698	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	17316503	130926698	2925197	60	47708											
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	64989255	64989256	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	64989256	-	T	64989255	7	5	740	1	0	1	1	0	0	0	0	0	17534	449	16	0	1035	0	ZBTB1	14	64989255	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10		64989255	42360285	61	47709											
MTA1	9112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105936238	105936239	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	105936239	-	G	105936238	7	5	740	1	0	1	1	0	0	0	0	0	9915	643	23	0	1984	0	MTA1	14	105936238	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	40946983	105936238	1413302	62	47710											
STOML1	9399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74281093	74281093	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	74281093	A	G	74281093	2	3	740	1	0	0	0	0	0	0	0	1	15325	243	9	3		3	STOML1	15	74281093	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10		74281093	28250299	63	47711											
LMAN1L	79748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75111060	75111060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	75111060	G	T	75111060	3	4	740	1	0	0	0	0	1	0	0	0	8844	1188	41	4	517	4	LMAN1L	15	75111060	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	829967	75111060	27420332	64	47712											
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	93007416	93007417	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	AT	93007417	TC	AT	93007416	3	1	740	1	0	0	0	0	1	0	0	0	15244	1435	50	5	951	5	ST8SIA2	15	93007416	Missense_Mutation	DNP	TC	TCGA-PJ-A5Z8-01A-11D-A28G-10	17896356	93007416	9523976	65	47713											
ARMC5	79798	broad.mit.edu	37	16	31471290	31471290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	31471290	G	T	31471290	3	4	740	1	0	0	0	0	1	0	0	0	954	1029	36	4	447	4	ARMC5	16	31471290	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10		31471290	58883463	66	47714											
NKD1	85407	broad.mit.edu;bcgsc.ca	37	16	50583404	50583404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	50583404	C	T	50583404	3	4	740	1	0	0	0	0	1	0	0	0	10448	623	22	2	140	2	NKD1	16	50583404	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	19112114	50583404	39771349	67	47715											
MMP15	4324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58079023	58079023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	C	58079023	G	C	58079023	3	2	740	1	0	0	0	0	1	0	0	0	9661	962	34	4	1721	4	MMP15	16	58079023	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	7495619	58079023	32275730	68	47716											
CLEC18B	497190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	74447559	74447559	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	74447559	A	T	74447559	3	4	740	1	0	0	0	0	1	0	0	0	3505	304	11	5	935	5	CLEC18B	16	74447559	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	16368536	74447559	15907194	69	47717											
CTRB1	1504	broad.mit.edu	37	16	75257061	75257061	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	75257061	G	-	75257061	7	5	740	1	0	1	0	1	0	0	0	0	4027	1348	47	0	273	0	CTRB1	16	75257061	Frame_Shift_Del	DEL	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	809502	75257061	15097692	70	47718											
ZZEF1	23140	broad.mit.edu	37	17	3910206	3910207	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	3910207	-	G	3910206	7	5	740	1	0	1	1	0	0	0	0	0	18267	768	27	0	25	0	ZZEF1	17	3910206	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10		3910206	77285004	71	47719											
CHD3	1107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7794342	7794342	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	7794342	C	G	7794342	3	3	740	1	0	0	0	0	1	0	0	0	3328	594	21	4	764	4	CHD3	17	7794342	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	3884136	7794342	73400868	72	47720											
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10558280	10558281	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	10558281	GG	-	10558280	7	5	740	1	0	1	0	1	0	0	0	0	10043	1335	47	0	5876	0	MYH3	17	10558280	Frame_Shift_Del	DEL	GG	TCGA-PJ-A5Z8-01A-11D-A28G-10	2763938	10558280	70636930	73	47721											
COX10	1352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	13980321	13980321	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	13980321	A	G	13980321	2	3	740	1	0	0	0	0	0	0	0	1	3764	69	3	3		3	COX10	17	13980321	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	3422041	13980321	67214889	74	47722											
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	19285118	C	A	19285118	3	1	740	1	0	0	0	0	1	0	0	0	9289	797	28	4	1516	4	MAPK7	17	19285118	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	5304797	19285118	61910092	75	47723											
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19449787	19449787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	C	19449787	T	C	19449787	3	2	740	1	0	0	0	0	1	0	0	0	14660	1435	50	3	287	3	SLC47A1	17	19449787	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	164669	19449787	61745423	76	47724											
ACACA	31	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35602012	35602012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	35602012	G	T	35602012	3	4	740	1	0	0	0	0	1	0	0	0	106	1232	43	4	4720	4	ACACA	17	35602012	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	16152225	35602012	45593198	77	47725											
ACSF2	80221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48539795	48539795	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	48539795	C	G	48539795	3	3	740	1	0	0	0	0	1	0	0	0	175	507	18	4	663	4	ACSF2	17	48539795	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	12937783	48539795	32655415	78	47726											
MRC2	9902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60753774	60753774	+	Silent	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	60753774	C	A	60753774	2	1	740	1	0	0	0	0	0	0	0	1	9765	903	32	4		4	MRC2	17	60753774	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	12213979	60753774	20441436	79	47727											
LRRC37A3	374819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	62855782	62855782	+	Silent	SNP	A	A	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	62855782	A	T	62855782	2	4	740	1	0	0	0	0	0	0	0	1	9000	126	5	5		5	LRRC37A3	17	62855782	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	2102008	62855782	18339428	80	47728											
MC5R	4161	broad.mit.edu;bcgsc.ca	37	18	13826448	13826448	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	13826448	G	A	13826448	2	1	740	1	0	0	0	0	0	0	0	1	9374	1074	38	1		1	MC5R	18	13826448	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10		13826448	64250800	81	47729											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	21508155	21508158	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	-	21508158	GATT	-	21508155	7	5	740	1	0	1	0	1	0	0	0	0	8614	942	33	0	8671	0	LAMA3	18	21508155	Frame_Shift_Del	DEL	GATT	TCGA-PJ-A5Z8-01A-11D-A28G-10	7681707	21508155	56569093	82	47730											
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	8527467	T	G	8527467	5	3	740	1	0	0	0	0	0	0	1	0	7278	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		8527467	50601516	83	47731											
MAP1S	55201	hgsc.bcm.edu	37	19	17837417	17837417	+	Silent	SNP	G	G	A	rs138676223		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	17837417	G	A	17837417	2	1	740	1	0	0	0	0	0	0	0	1	9241	1074	38	1		1	MAP1S	19	17837417	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	9309950	17837417	41291566	84	47732											
IL12RB1	3594	broad.mit.edu	37	19	18194264	18194265	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	18194265	-	G	18194264	7	5	740	1	0	1	1	0	0	0	0	0	7633	755	27	0	2079	0	IL12RB1	19	18194264	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	356847	18194264	40934719	85	47733											
GPATCH1	55094	broad.mit.edu	37	19	33603471	33603471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	33603471	C	A	33603471	3	1	740	1	0	0	0	0	1	0	0	0	6597	681	24	4	1894	4	GPATCH1	19	33603471	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	15409207	33603471	25525512	86	47734											
ZNF780A	284323	hgsc.bcm.edu	37	19	40578806	40578806	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	40578806	A	T	40578806	3	4	740	1	0	0	0	0	1	0	0	0	18164	127	5	5	45	5	ZNF780A	19	40578806	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	6975335	40578806	18550177	87	47735											
ZNF320	162967	ucsc.edu	37	19	53384827	53384827	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	53384827	A	G	53384827	2	3	740	1	0	0	0	0	0	0	0	1	17851	175	7	3		3	ZNF320	19	53384827	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	12806021	53384827	5744156	88	47736											
EPS8L1	54869	ucsc.edu;bcgsc.ca	37	19	55591878	55591878	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	55591878	C	G	55591878	3	3	740	1	0	0	0	0	1	0	0	0	5197	594	21	4	468	4	EPS8L1	19	55591878	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	2207051	55591878	3537105	89	47737											
UBOX5	22888	bcgsc.ca	37	20	3102507	3102507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	3102507	G	A	3102507	3	1	740	1	0	0	0	0	1	0	0	0	16906	1203	42	2	859	2	UBOX5	20	3102507	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10		3102507	59923013	90	47738											
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	33603843	33603844	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	AA	33603844	-	AA	33603843	7	5	740	1	0	1	1	0	0	0	0	0	16593	1348	47	0	1115	0	TRPC4AP	20	33603843	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	30501336	33603843	29421677	91	47739											
DLGAP4	22839	hgsc.bcm.edu	37	20	35064566	35064566	+	Missense_Mutation	SNP	G	G	A	rs199988815		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	35064566	G	A	35064566	3	1	740	1	0	0	0	0	1	0	0	0	4564	1174	41	2	1060	2	DLGAP4	20	35064566	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	1460723	35064566	27960954	92	47740											
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43241557	43241557	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	T	43241557	C	T	43241557	2	4	740	1	0	0	0	0	0	0	0	1	12466	813	29	2		2	PRDM15	21	43241557	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		43241557	4888338	93	47741											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50716444	50716444	+	Splice_Site	SNP	T	T	C	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	C	50716444	T	C	50716444	5	2	740	1	0	0	0	0	0	0	1	0	12131	1594	55	3	654	3	PLXNB2	22	50716444	Splice_Site	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		50716444	588122	94	47742											
COL4A6	1288	bcgsc.ca	37	X	107430496	107430496	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	A	107430496	T	A	107430496	3	1	740	1	0	0	0	0	1	0	0	0	3697	1580	55	5	3383	5	COL4A6	23	107430496	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		107430496	47840064	95	47743											
AVPR2	554	broad.mit.edu	37	X	153171162	153171163	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	G	153171163	-	G	153171162	7	5	740	1	0	1	1	0	0	0	0	0	1233	759	27	0	208	0	AVPR2	23	153171162	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	45740666	153171162	2099398	96	47744											
IL22RA1	58985	broad.mit.edu	37	1	24465122	24465122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	24465122	G	T	24465122	3	4	741	1	0	0	0	0	1	0	0	0	7680	1368	48	4	1622	4	IL22RA1	1	24465122	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		24465122	224785499	1	47745											
TEKT2	27285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36552574	36552574	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	36552574	C	T	36552574	2	4	741	1	0	0	0	0	0	0	0	1	15765	477	17	2		2	TEKT2	1	36552574	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	12087452	36552574	212698047	2	47746											
SLC35D1	23169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	67519574	67519574	+	Silent	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	67519574	C	A	67519574	2	1	741	1	0	0	0	0	0	0	0	1	14594	813	29	4		4	SLC35D1	1	67519574	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	30967000	67519574	181731047	3	47747											
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	75037280	75037280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	75037280	C	A	75037280	3	1	741	1	0	0	0	0	1	0	0	0	2016	797	28	4	482	4	C1orf173	1	75037280	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	7517706	75037280	174213341	4	47748											
USP33	23032	broad.mit.edu;bcgsc.ca	37	1	78194350	78194350	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	78194350	T	C	78194350	2	2	741	1	0	0	0	0	0	0	0	1	17076	1490	52	3		3	USP33	1	78194350	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	3157070	78194350	171056271	5	47749											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94546179	94546179	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	94546179	G	A	94546179	2	1	741	1	0	0	0	0	0	0	0	1	34	1164	41	2		2	ABCA4	1	94546179	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	16351829	94546179	154704442	6	47750											
SLC30A7	148867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	101387350	101387350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	101387350	A	G	101387350	3	3	741	1	0	0	0	0	1	0	0	0	14573	410	15	3	825	3	SLC30A7	1	101387350	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	6841171	101387350	147863271	7	47751											
FCGR2C	9103	broad.mit.edu	37	1	161559585	161559585	+	RNA	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	161559585	C	T	161559585	1	4	741	0	1	0	0	0	0	0	0	0	5790	623	22	2		2	FCGR2C	1	161559585	RNA	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	60172235	161559585	87691036	8	47752											
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	222803477	222803477	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	-	222803477	A	-	222803477	7	5	741	1	0	1	0	1	0	0	0	0	9572	246	9	0	2929	0	MIA3	1	222803477	Frame_Shift_Del	DEL	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	61243892	222803477	26447144	9	47753											
IRF2BP2	359948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	234743060	234743060	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	234743060	G	A	234743060	2	1	741	1	0	0	0	0	0	0	0	1	7837	933	33	2		2	IRF2BP2	1	234743060	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	11939583	234743060	14507561	10	47754											
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141771172	141771172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	141771172	C	A	141771172	3	1	741	1	0	0	0	0	1	0	0	0	8962	913	32	4	11778	4	LRP1B	2	141771172	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		141771172	101428201	11	47755											
GRB14	2888	hgsc.bcm.edu	37	2	165477654	165477654	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	165477654	C	G	165477654	3	3	741	1	0	0	0	0	1	0	0	0	6764	652	23	4	1512	4	GRB14	2	165477654	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	23706482	165477654	77721719	12	47756											
RNF25	64320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219536685	219536685	+	Silent	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	219536685	C	G	219536685	2	3	741	1	0	0	0	0	0	0	0	1	13498	523	19	4		4	RNF25	2	219536685	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	54059031	219536685	23662688	13	47757											
ATG9A	79065	hgsc.bcm.edu	37	2	220085516	220085516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	220085516	C	T	220085516	3	4	741	1	0	0	0	0	1	0	0	0	1102	536	19	1	60	1	ATG9A	2	220085516	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	548831	220085516	23113857	14	47758											
DES	1674	hgsc.bcm.edu	37	2	220283244	220283245	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	AT	220283245	GG	AT	220283244	3	1	741	1	0	0	0	0	1	0	0	0	4451	1219	43	2	62	2	DES	2	220283244	Missense_Mutation	DNP	GG	TCGA-PJ-A5Z9-01A-11D-A28G-10	197728	220283244	22916129	15	47759											
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	241696843	C	A	241696843	3	1	741	1	0	0	0	0	1	0	0	0	8290	696	24	4		4	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	21413599	241696843	1502530	16	47760											
TOP2B	7155	hgsc.bcm.edu	37	3	25705758	25705758	+	Missense_Mutation	SNP	C	C	T	rs145455403		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	25705758	C	T	25705758	3	4	741	1	0	0	0	0	1	0	0	0	16378	797	28	2	4978	2	TOP2B	3	25705758	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		25705758	172316672	17	47761											
SETD2	29072	hgsc.bcm.edu	37	3	47164505	47164505	+	Silent	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	47164505	G	T	47164505	2	4	741	1	0	0	0	0	0	0	0	1	14144	1153	40	4		4	SETD2	3	47164505	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	21458747	47164505	150857925	18	47762											
GMPPB	29925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49759370	49759370	+	Missense_Mutation	SNP	C	C	T	rs71324991		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	49759370	C	T	49759370	3	4	741	1	0	0	0	0	1	0	0	0	6502	864	30	2	188	2	GMPPB	3	49759370	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	2594865	49759370	148263060	19	47763											
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49847782	49847782	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	49847782	A	T	49847782	3	4	741	1	0	0	0	0	1	0	0	0	16845	188	7	5	1539	5	UBA7	3	49847782	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	88412	49847782	148174648	20	47764											
ACTR8	93973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	53913972	53913972	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	53913972	T	C	53913972	2	2	741	1	0	0	0	0	0	0	0	1	217	1654	58	3		3	ACTR8	3	53913972	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	4066190	53913972	144108458	21	47765											
ERC2	26059	broad.mit.edu	37	3	56114913	56114913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	56114913	C	T	56114913	3	4	741	1	0	0	0	0	1	0	0	0	5213	652	23	1	1334	1	ERC2	3	56114913	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	2200941	56114913	141907517	22	47766											
IGF2BP2	10644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185542743	185542743	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	185542743	C	G	185542743	3	3	741	1	0	0	0	0	1	0	0	0	7581	826	29	4	1857	4	IGF2BP2	3	185542743	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	129427830	185542743	12479687	23	47767											
NKX3-2	579	hgsc.bcm.edu	37	4	13545664	13545664	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	13545664	G	A	13545664	2	1	741	1	0	0	0	0	0	0	0	1	10463	1045	37	1		1	NKX3-2	4	13545664	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		13545664	177608612	24	47768											
NIPAL1	152519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48037862	48037862	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	48037862	T	C	48037862	2	2	741	1	0	0	0	0	0	0	0	1	10431	1403	49	3		3	NIPAL1	4	48037862	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	34492198	48037862	143116414	25	47769											
DSPP	1834	bcgsc.ca	37	4	88537018	88537018	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	88537018	T	C	88537018	2	2	741	1	0	0	0	0	0	0	0	1	4784	1403	49	3		3	DSPP	4	88537018	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	40499156	88537018	102617258	26	47770											
IRX2	153572	broad.mit.edu;bcgsc.ca	37	5	2748624	2748624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	2748624	C	T	2748624	3	4	741	1	0	0	0	0	1	0	0	0	7851	768	27	1	225	1	IRX2	5	2748624	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		2748624	178166636	27	47771											
PRDM9	56979	bcgsc.ca	37	5	23527640	23527640	+	Missense_Mutation	SNP	A	A	T	rs202203985		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	23527640	A	T	23527640	3	4	741	1	0	0	0	0	1	0	0	0	12473	130	5	5	2481	5	PRDM9	5	23527640	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	20779016	23527640	157387620	28	47772											
FYB	2533	bcgsc.ca	37	5	39202408	39202408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	39202408	C	G	39202408	3	3	741	1	0	0	0	0	1	0	0	0	6131	478	17	4	1906	4	FYB	5	39202408	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	15674768	39202408	141712852	29	47773											
MAP3K1	4214	hgsc.bcm.edu	37	5	56170960	56170960	+	Silent	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	56170960	G	T	56170960	2	4	741	1	0	0	0	0	0	0	0	1	9250	1364	48	4		4	MAP3K1	5	56170960	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	16968552	56170960	124744300	30	47774											
TRIM23	373	broad.mit.edu;bcgsc.ca	37	5	64892965	64892965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	64892965	C	T	64892965	3	4	741	1	0	0	0	0	1	0	0	0	16509	536	19	1	585	1	TRIM23	5	64892965	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	8722005	64892965	116022295	31	47775											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79970928	79970928	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	79970928	A	T	79970928	3	4	741	1	0	0	0	0	1	0	0	0	9878	43	2	5	1180	5	MSH3	5	79970928	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	15077963	79970928	100944332	32	47776											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137717257	137717257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	137717257	A	C	137717257	3	2	741	1	0	0	0	0	1	0	0	0	8134	333	12	5	780	5	KDM3B	5	137717257	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	57746329	137717257	43198003	33	47777											
ZNF354B	117608	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178310106	178310106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	178310106	C	T	178310106	3	4	741	1	0	0	0	0	1	0	0	0	17877	478	17	2	667	2	ZNF354B	5	178310106	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	40592849	178310106	2605154	34	47778											
ZNF184	7738	ucsc.edu;bcgsc.ca	37	6	27420593	27420593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	27420593	G	T	27420593	3	4	741	1	0	0	0	0	1	0	0	0	17763	1261	44	4	1514	4	ZNF184	6	27420593	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		27420593	143694474	35	47779											
C4A	720	broad.mit.edu;bcgsc.ca	37	6	31962347	31962347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	31962347	G	A	31962347	3	1	741	1	0	0	0	0	1	0	0	0	2249	1261	44	2	2747	2	C4A	6	31962347	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	4541754	31962347	139152720	36	47780											
SYNGAP1	8831	broad.mit.edu;bcgsc.ca	37	6	33393615	33393615	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	33393615	G	C	33393615	3	2	741	1	0	0	0	0	1	0	0	0	15459	1029	36	4	240	4	SYNGAP1	6	33393615	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	1431268	33393615	137721452	37	47781											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	90573643	90573643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	90573643	T	C	90573643	3	2	741	1	0	0	0	0	1	0	0	0	2680	1754	61	3	2237	3	CASP8AP2	6	90573643	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	57180028	90573643	80541424	38	47782											
LAMA2	3908	bcgsc.ca	37	6	129573388	129573388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	129573388	A	G	129573388	3	3	741	1	0	0	0	0	1	0	0	0	8613	247	9	3	2098	3	LAMA2	6	129573388	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	38999745	129573388	41541679	39	47783											
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139262487	139262487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	139262487	A	T	139262487	3	4	741	1	0	0	0	0	1	0	0	0	13241	11	1	5	1322	5	REPS1	6	139262487	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	9689099	139262487	31852580	40	47784											
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31862809	31862809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	31862809	C	A	31862809	3	1	741	1	0	0	0	0	1	0	0	0	11642	507	18	4	460	4	PDE1C	7	31862809	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		31862809	127275854	41	47785											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2824167	2824167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	2824167	A	G	2824167	3	3	741	1	0	0	0	0	1	0	0	0	3946	420	15	3	1721	3	CSMD1	8	2824167	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10		2824167	143539855	42	47786											
NEFL	4747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	24813800	24813800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	24813800	G	A	24813800	3	1	741	1	0	0	0	0	1	0	0	0	10322	1203	42	2	1418	2	NEFL	8	24813800	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	21989633	24813800	121550222	43	47787											
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99039960	99039960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	99039960	G	T	99039960	3	4	741	1	0	0	0	0	1	0	0	0	9341	1194	42	4	2309	4	MATN2	8	99039960	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	74226160	99039960	47324062	44	47788											
GPR20	2843	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	142367789	142367789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	142367789	A	T	142367789	3	4	741	1	0	0	0	0	1	0	0	0	6687	188	7	5	845	5	GPR20	8	142367789	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	43327829	142367789	3996233	45	47789											
PLEC	5339	hgsc.bcm.edu	37	8	145024821	145024825	+	Frame_Shift_Del	DEL	CACCT	CACCT	-	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	CACCT	CACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	-	145024825	CACCT	-	145024821	7	5	741	1	0	1	0	1	0	0	0	0	12059	697	25	0	14508	0	PLEC	8	145024821	Frame_Shift_Del	DEL	CACCT	TCGA-PJ-A5Z9-01A-11D-A28G-10	2657032	145024821	1339201	46	47790											
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32541932	32541932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	32541932	C	T	32541932	3	4	741	1	0	0	0	0	1	0	0	0	16382	797	28	2	550	2	TOPORS	9	32541932	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		32541932	108671499	47	47791											
FCN2	2220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137777085	137777085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	137777085	G	T	137777085	3	4	741	1	0	0	0	0	1	0	0	0	5799	1217	42	4	320	4	FCN2	9	137777085	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	105235153	137777085	3436346	48	47792											
KCNT1	57582	hgsc.bcm.edu	37	9	138594140	138594140	+	Silent	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	138594140	C	G	138594140	2	3	741	1	0	0	0	0	0	0	0	1	8098	755	27	4		4	KCNT1	9	138594140	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	817055	138594140	2619291	49	47793											
DHTKD1	55526	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12160902	12160902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	12160902	T	C	12160902	3	2	741	1	0	0	0	0	1	0	0	0	4502	1406	49	3	2615	3	DHTKD1	10	12160902	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10		12160902	123373845	50	47794											
PTPLA	9200	broad.mit.edu	37	10	17636308	17636308	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	17636308	T	A	17636308	3	1	741	1	0	0	0	0	1	0	0	0	12785	1464	51	5	194	5	PTPLA	10	17636308	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	5475406	17636308	117898439	51	47795											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61829169	61829169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	61829169	C	T	61829169	3	4	741	1	0	0	0	0	1	0	0	0	622	565	20	2	2004	2	ANK3	10	61829169	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	44192861	61829169	73705578	52	47796											
MMRN2	79812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88703695	88703695	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	88703695	G	A	88703695	2	1	741	1	0	0	0	0	0	0	0	1	9678	1335	47	2		2	MMRN2	10	88703695	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	26874526	88703695	46831052	53	47797											
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99160073	99160073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	99160073	C	T	99160073	3	4	741	1	0	0	0	0	1	0	0	0	13699	710	25	2	3667	2	RRP12	10	99160073	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	10456378	99160073	36374674	54	47798											
STK32C	282974	hgsc.bcm.edu	37	10	134036392	134036392	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	134036392	C	T	134036392	2	4	741	1	0	0	0	0	0	0	0	1	15311	912	32	2		2	STK32C	10	134036392	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	34876319	134036392	1498355	55	47799											
SLC22A18	5002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2937874	2937874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	2937874	G	T	2937874	3	4	741	1	0	0	0	0	1	0	0	0	14462	1203	42	4	577	4	SLC22A18	11	2937874	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		2937874	132068642	56	47800											
PAMR1	25891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	35454107	35454107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	35454107	G	A	35454107	3	1	741	1	0	0	0	0	1	0	0	0	11420	1261	44	2	206	2	PAMR1	11	35454107	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	32516233	35454107	99552409	57	47801											
CLSTN3	9746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7295575	7295575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	7295575	G	C	7295575	3	2	741	1	0	0	0	0	1	0	0	0	3565	1175	41	4	1693	4	CLSTN3	12	7295575	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		7295575	126556320	58	47802											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57894254	57894254	+	Silent	SNP	G	G	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	57894254	G	C	57894254	2	2	741	1	0	0	0	0	0	0	0	1	9323	1219	43	4		4	MARS	12	57894254	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	50598679	57894254	75957641	59	47803											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	35770159	35770159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	35770159	G	T	35770159	3	4	741	1	0	0	0	0	1	0	0	0	10194	1000	35	4	5208	4	NBEA	13	35770159	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		35770159	79399719	60	47804											
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40056080	40056080	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	40056080	C	T	40056080	2	4	741	1	0	0	0	0	0	0	0	1	6081	680	24	2		2	FSIP1	15	40056080	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		40056080	62475312	61	47805											
NDUFAF1	51103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41689069	41689069	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	41689069	G	A	41689069	2	1	741	1	0	0	0	0	0	0	0	1	10281	1252	44	2		2	NDUFAF1	15	41689069	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	1632989	41689069	60842323	62	47806											
SPG11	80208	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44855441	44855441	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	44855441	A	T	44855441	3	4	741	1	0	0	0	0	1	0	0	0	15053	449	16	5	125	5	SPG11	15	44855441	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	3166372	44855441	57675951	63	47807											
ANKS3	124401	hgsc.bcm.edu	37	16	4748510	4748510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	4748510	G	T	4748510	3	4	741	1	0	0	0	0	1	0	0	0	690	1116	39	4	344	4	ANKS3	16	4748510	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		4748510	85606243	64	47808											
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	10273887	10273887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	10273887	G	C	10273887	3	2	741	1	0	0	0	0	1	0	0	0	6786	1290	45	4	4060	4	GRIN2A	16	10273887	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	5525377	10273887	80080866	65	47809											
DBNDD1	79007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90072805	90072805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	90072805	G	T	90072805	3	4	741	1	0	0	0	0	1	0	0	0	4255	1232	43	4	65	4	DBNDD1	16	90072805	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	79798918	90072805	281948	66	47810											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7727530	7727530	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	7727530	A	T	7727530	3	4	741	1	0	0	0	0	1	0	0	0	4604	159	6	5	11868	5	DNAH2	17	7727530	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10		7727530	73467680	67	47811											
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	19285118	C	A	19285118	3	1	741	1	0	0	0	0	1	0	0	0	9289	797	28	4	1516	4	MAPK7	17	19285118	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	11557588	19285118	61910092	68	47812											
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26912886	26912886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	26912886	T	C	26912886	3	2	741	1	0	0	0	0	1	0	0	0	14994	1435	50	3	1917	3	SPAG5	17	26912886	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	7627768	26912886	54282324	69	47813											
KRT13	3860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39658844	39658844	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	39658844	T	C	39658844	2	2	741	1	0	0	0	0	0	0	0	1	8457	1606	56	3		3	KRT13	17	39658844	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	12745958	39658844	41536366	70	47814											
SLC14A1	6563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	43316457	43316458	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	43316458	-	A	43316457	7	5	741	1	0	1	1	0	0	0	0	0	14409	709	25	0	693	0	SLC14A1	18	43316457	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z9-01A-11D-A28G-10		43316457	34760791	71	47815											
ZNF516	9658	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74091620	74091620	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	74091620	C	G	74091620	3	3	741	1	0	0	0	0	1	0	0	0	17972	739	26	4	1058	4	ZNF516	18	74091620	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	30775163	74091620	3985628	72	47816											
ELAVL1	1994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8038748	8038748	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	8038748	G	A	8038748	2	1	741	1	0	0	0	0	0	0	0	1	5051	1190	42	2		2	ELAVL1	19	8038748	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		8038748	51090235	73	47817											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9077779	9077779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	9077779	T	G	9077779	3	3	741	1	0	0	0	0	1	0	0	0	9980	1696	59	5	34184	5	MUC16	19	9077779	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	1039031	9077779	50051204	74	47818											
ILVBL	10994	broad.mit.edu	37	19	15227275	15227275	+	Silent	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	15227275	G	T	15227275	2	4	741	1	0	0	0	0	0	0	0	1	7722	1219	43	4		4	ILVBL	19	15227275	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	6149496	15227275	43901708	75	47819											
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2592879	2592879	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	G	2592879	C	G	2592879	3	3	741	1	0	0	0	0	1	0	0	0	15997	912	32	4	1686	4	TMC2	20	2592879	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		2592879	60432641	76	47820											
PANK2	80025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	3869791	3869791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	3869791	C	T	3869791	3	4	741	1	0	0	0	0	1	0	0	0	11424	768	27	1	46	1	PANK2	20	3869791	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	1276912	3869791	59155729	77	47821											
VAPB	9217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	57009683	57009684	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	C	57009684	-	C	57009683	7	5	741	1	0	1	1	0	0	0	0	0	17134	1432	50	0	247	0	VAPB	20	57009683	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z9-01A-11D-A28G-10	53139892	57009683	6015837	78	47822											
KRTAP19-5	337972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31874285	31874285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	31874285	C	T	31874285	3	4	741	1	0	0	0	0	1	0	0	0	8539	661	23	1	97	1	KRTAP19-5	21	31874285	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		31874285	16255610	79	47823											
MYH9	4627	broad.mit.edu	37	22	36702092	36702092	+	Silent	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	36702092	G	T	36702092	2	4	741	1	0	0	0	0	0	0	0	1	10049	1306	46	4		4	MYH9	22	36702092	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		36702092	14602474	80	47824											
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42289217	42289217	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	-	42289217	T	-	42289217	7	5	741	1	0	1	0	1	0	0	0	0	15154	1725	60	0	2351	0	SREBF2	22	42289217	Frame_Shift_Del	DEL	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	5587125	42289217	9015349	81	47825											
TBL1X	6907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	9683003	9683003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	9683003	C	T	9683003	3	4	741	1	0	0	0	0	1	0	0	0	15651	739	26	2	1721	2	TBL1X	23	9683003	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		9683003	145587557	82	47826											
SSX5	6758	broad.mit.edu;bcgsc.ca	37	X	48053577	48053578	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	TT	48053578	GG	TT	48053577	3	4	741	1	0	0	0	0	1	0	0	0	15220	1116	39	4	314	4	SSX5	23	48053577	Missense_Mutation	DNP	GG	TCGA-PJ-A5Z9-01A-11D-A28G-10	38370574	48053577	107216983	83	47827											
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71802352	71802352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	71802352	G	A	71802352	3	1	741	1	0	0	0	0	1	0	0	0	11850	1000	35	2	285	2	PHKA1	23	71802352	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	23748775	71802352	83468208	84	47828											
PCDH11X	27328	broad.mit.edu;bcgsc.ca	37	X	91873700	91873700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	91873700	C	T	91873700	3	4	741	1	0	0	0	0	1	0	0	0	11515	884	31	1	3953	1	PCDH11X	23	91873700	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	20071348	91873700	63396860	85	47829											
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150348665	150348665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	A	150348665	G	A	150348665	3	1	741	1	0	0	0	0	1	0	0	0	6704	1145	40	1	616	1	GPR50	23	150348665	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	58474965	150348665	4921895	86	47830											
RENBP	5973	hgsc.bcm.edu	37	X	153200791	153200791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	T	153200791	G	T	153200791	3	4	741	1	0	0	0	0	1	0	0	0	13238	1232	43	4	55	4	RENBP	23	153200791	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	2852126	153200791	2069769	87	47831											
RERE	473	hgsc.bcm.edu	37	1	8419867	8419868	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	TT	8419868	CG	TT	8419867	3	4	742	1	0	0	0	0	1	0	0	0	13244	652	23	1	1145	1	RERE	1	8419867	Missense_Mutation	DNP	CG	TCGA-Q2-A5QZ-01A-11D-A28G-10		8419867	240830754	1	47832											
NBPF1	55672	broad.mit.edu	37	1	16891326	16891326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	16891326	T	C	16891326	3	2	742	1	0	0	0	0	1	0	0	0	10199	1783	62	3	275	3	NBPF1	1	16891326	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	8471459	16891326	232359295	2	47833											
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	86934706	86934706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	86934706	G	A	86934706	3	1	742	1	0	0	0	0	1	0	0	0	3459	1000	35	2	54	2	CLCA1	1	86934706	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	70043380	86934706	162315915	3	47834											
LCE1C	353133	hgsc.bcm.edu	37	1	152777877	152777877	+	Silent	SNP	G	G	A	rs138242706		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	152777877	G	A	152777877	2	1	742	1	0	0	0	0	0	0	0	1	8668	1219	43	2		2	LCE1C	1	152777877	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	65843171	152777877	96472744	4	47835											
IVL	3713	broad.mit.edu	37	1	152883269	152883269	+	Silent	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	152883269	A	G	152883269	2	3	742	1	0	0	0	0	0	0	0	1	7936	40	2	3		3	IVL	1	152883269	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	105392	152883269	96367352	5	47836											
DUSP23	54935	hgsc.bcm.edu	37	1	159751066	159751066	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	159751066	A	T	159751066	3	4	742	1	0	0	0	0	1	0	0	0	4824	159	6	5	178	5	DUSP23	1	159751066	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	6867797	159751066	89499555	6	47837											
FAM5B	57795	broad.mit.edu;bcgsc.ca	37	1	177242681	177242690	+	Frame_Shift_Del	DEL	GTCAGTTCTG	GTCAGTTCTG	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	GTCAGTTCTG	GTCAGTTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	177242690	GTCAGTTCTG	-	177242681	7	5	742	1	0	1	0	1	0	0	0	0	5600	1029	36	0	741	0	FAM5B	1	177242681	Frame_Shift_Del	DEL	GTCAGTTCTG	TCGA-Q2-A5QZ-01A-11D-A28G-10	17491615	177242681	72007940	7	47838											
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204985554	204985554	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	204985554	G	T	204985554	4	4	742	1	0	0	0	0	0	1	0	0	10366	1291	45	4	4133	4	NFASC	1	204985554	Nonsense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	27742873	204985554	44265067	8	47839											
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50850682	50850682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	50850682	G	T	50850682	3	4	742	1	0	0	0	0	1	0	0	0	10672	1299	45	4	3975	4	NRXN1	2	50850682	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		50850682	192348691	9	47840											
SPOPL	339745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	139322375	139322375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	139322375	A	G	139322375	3	3	742	1	0	0	0	0	1	0	0	0	15097	159	6	3	965	3	SPOPL	2	139322375	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	88471693	139322375	103876998	10	47841											
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	167055820	167055820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	167055820	C	T	167055820	3	4	742	1	0	0	0	0	1	0	0	0	13938	855	30	2	641	2	SCN9A	2	167055820	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	27733445	167055820	76143553	11	47842											
TTN	7273	broad.mit.edu	37	2	179499952	179499952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	179499952	G	C	179499952	3	2	742	1	0	0	0	0	1	0	0	0	16747	932	33	4	66269	4	TTN	2	179499952	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	12444132	179499952	63699421	12	47843											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233671361	233671361	+	Silent	SNP	T	T	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	233671361	T	A	233671361	2	1	742	1	0	0	0	0	0	0	0	1	6385	1538	54	5		5	GIGYF2	2	233671361	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	54171409	233671361	9528012	13	47844											
IQCA1	79781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	237272540	237272540	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	237272540	C	T	237272540	2	4	742	1	0	0	0	0	0	0	0	1	7809	581	21	2		2	IQCA1	2	237272540	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	3601179	237272540	5926833	14	47845											
PTPRG	5793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	62189090	62189090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	62189090	G	C	62189090	3	2	742	1	0	0	0	0	1	0	0	0	12815	1203	42	4	1667	4	PTPRG	3	62189090	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		62189090	135833340	15	47846											
KIAA2018	205717	hgsc.bcm.edu;ucsc.edu	37	3	113376122	113376122	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	113376122	C	T	113376122	2	4	742	1	0	0	0	0	0	0	0	1	8275	796	28	2		2	KIAA2018	3	113376122	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	51187032	113376122	84646308	16	47847	707	2									
KIAA2018	205717	hgsc.bcm.edu	37	3	113376128	113376128	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	113376128	C	T	113376128	2	4	742	1	0	0	0	0	0	0	0	1	8275	796	28	2		2	KIAA2018	3	113376128	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	6	113376128	84646302	17	47848	707	2									
ROPN1B	152015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	125690910	125690910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	125690910	G	T	125690910	3	4	742	1	0	0	0	0	1	0	0	0	13537	942	33	4	15	4	ROPN1B	3	125690910	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	12314782	125690910	72331520	18	47849											
PPP2R3A	5523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	135825108	135825108	+	Silent	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	135825108	T	C	135825108	2	2	742	1	0	0	0	0	0	0	0	1	12398	1567	55	3		3	PPP2R3A	3	135825108	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	10134198	135825108	62197322	19	47850											
FAM194A	131831	broad.mit.edu	37	3	150421590	150421590	+	Silent	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	150421590	T	C	150421590	2	2	742	1	0	0	0	0	0	0	0	1	5530	1606	56	3		3	FAM194A	3	150421590	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	14596482	150421590	47600840	20	47851											
YEATS2	55689	broad.mit.edu	37	3	183525842	183525842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	183525842	G	T	183525842	3	4	742	1	0	0	0	0	1	0	0	0	17484	1203	42	4	4146	4	YEATS2	3	183525842	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	33104252	183525842	14496588	21	47852											
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185960324	185960324	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	185960324	T	A	185960324	4	1	742	1	0	0	0	0	0	1	0	0	4471	1559	54	5	604	5	DGKG	3	185960324	Nonsense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	2434482	185960324	12062106	22	47853											
MUC20	200958	broad.mit.edu	37	3	195447900	195447900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	195447900	G	A	195447900	3	1	742	1	0	0	0	0	1	0	0	0	9983	1203	42	2	24	2	MUC20	3	195447900	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	9487576	195447900	2574530	23	47854											
MUC4	4585	broad.mit.edu	37	3	195505794	195505794	+	Silent	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	195505794	T	G	195505794	2	3	742	1	0	0	0	0	0	0	0	1	9985	1567	55	5		5	MUC4	3	195505794	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	57894	195505794	2516636	24	47855											
MUC4	4585	broad.mit.edu	37	3	195509340	195509340	+	Silent	SNP	G	G	A	rs200269750	alternate_allele	TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	195509340	G	A	195509340	2	1	742	1	0	0	0	0	0	0	0	1	9985	1136	40	1		1	MUC4	3	195509340	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3546	195509340	2513090	25	47856											
MUC4	4585	broad.mit.edu	37	3	195512487	195512487	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	195512487	G	A	195512487	2	1	742	1	0	0	0	0	0	0	0	1	9985	1103	39	1		1	MUC4	3	195512487	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3147	195512487	2509943	26	47857											
PPP2R2C	5522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	6335365	6335365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	6335365	T	C	6335365	3	2	742	1	0	0	0	0	1	0	0	0	12396	1638	57	3	471	3	PPP2R2C	4	6335365	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10		6335365	184818911	27	47858											
ATP10D	57205	broad.mit.edu	37	4	47593174	47593174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	47593174	G	T	47593174	3	4	742	1	0	0	0	0	1	0	0	0	1118	1203	42	4	4143	4	ATP10D	4	47593174	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	41257809	47593174	143561102	28	47859											
DSPP	1834	bcgsc.ca	37	4	88536238	88536238	+	Silent	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	88536238	T	C	88536238	2	2	742	1	0	0	0	0	0	0	0	1	4784	1403	49	3		3	DSPP	4	88536238	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	40943064	88536238	102618038	29	47860											
DSPP	1834	hgsc.bcm.edu	37	4	88536436	88536436	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	88536436	C	T	88536436	2	4	742	1	0	0	0	0	0	0	0	1	4784	709	25	2		2	DSPP	4	88536436	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	198	88536436	102617840	30	47861											
PLEKHG4B	153478	broad.mit.edu	37	5	169688	169688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	169688	G	T	169688	3	4	742	1	0	0	0	0	1	0	0	0	12079	1203	42	4	2688	4	PLEKHG4B	5	169688	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		169688	180745572	31	47862											
SLC9A3	6550	broad.mit.edu	37	5	475168	475168	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	475168	G	A	475168	2	1	742	1	0	0	0	0	0	0	0	1	14726	1103	39	1		1	SLC9A3	5	475168	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	305480	475168	180440092	32	47863											
FAM105A	54491	broad.mit.edu;bcgsc.ca	37	5	14601482	14601482	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	14601482	G	A	14601482	2	1	742	1	0	0	0	0	0	0	0	1	5391	991	35	2		2	FAM105A	5	14601482	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	14126314	14601482	166313778	33	47864											
SHROOM1	134549	hgsc.bcm.edu	37	5	132161622	132161622	+	Missense_Mutation	SNP	C	C	G	rs201865788		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	132161622	C	G	132161622	3	3	742	1	0	0	0	0	1	0	0	0	14306	623	22	4	2375	4	SHROOM1	5	132161622	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	117560140	132161622	48753638	34	47865											
NR3C1	2908	broad.mit.edu	37	5	142678363	142678363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	142678363	G	T	142678363	3	4	742	1	0	0	0	0	1	0	0	0	10637	1377	48	4	639	4	NR3C1	5	142678363	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	10516741	142678363	38236897	35	47866											
TLX3	30012	hgsc.bcm.edu	37	5	170736390	170736390	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	170736390	G	A	170736390	2	1	742	1	0	0	0	0	0	0	0	1	15974	1074	38	1		1	TLX3	5	170736390	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	28058027	170736390	10178870	36	47867											
DBN1	1627	broad.mit.edu	37	5	176885609	176885609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	176885609	G	A	176885609	3	1	742	1	0	0	0	0	1	0	0	0	4254	1087	38	1	735	1	DBN1	5	176885609	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	6149219	176885609	4029651	37	47868											
OR10C1	442194	hgsc.bcm.edu;broad.mit.edu	37	6	29408232	29408232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	29408232	C	T	29408232	3	4	742	1	0	0	0	0	1	0	0	0	10905	768	27	1	442	1	OR10C1	6	29408232	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		29408232	141706835	38	47869											
TUBB	203068	broad.mit.edu	37	6	30692075	30692075	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	30692075	G	C	30692075	3	2	742	1	0	0	0	0	1	0	0	0	16764	933	33	4	1250	4	TUBB	6	30692075	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	1283843	30692075	140422992	39	47870											
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43412898	43412898	+	Missense_Mutation	SNP	A	A	G	rs200602946		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	43412898	A	G	43412898	3	3	742	1	0	0	0	0	1	0	0	0	50	101	4	3	2838	3	ABCC10	6	43412898	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	12720823	43412898	127702169	40	47871											
CD2AP	23607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	47471115	47471115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	47471115	A	T	47471115	3	4	742	1	0	0	0	0	1	0	0	0	2996	246	9	5	110	5	CD2AP	6	47471115	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	4058217	47471115	123643952	41	47872											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	51890186	51890186	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	51890186	C	-	51890186	7	5	742	1	0	1	0	1	0	0	0	0	11978	842	30	0	7985	0	PKHD1	6	51890186	Frame_Shift_Del	DEL	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	4419071	51890186	119224881	42	47873											
LRRC1	55227	broad.mit.edu	37	6	53764574	53764575	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	53764575	TT	-	53764574	7	5	742	1	0	1	0	1	0	0	0	0	8973	1731	60	0	702	0	LRRC1	6	53764574	Frame_Shift_Del	DEL	TT	TCGA-Q2-A5QZ-01A-11D-A28G-10	1874388	53764574	117350493	43	47874											
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56989656	56989656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	56989656	G	A	56989656	3	1	742	1	0	0	0	0	1	0	0	0	17934	956	33	2	325	2	ZNF451	6	56989656	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3225082	56989656	114125411	44	47875											
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	64394128	64394128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	64394128	G	A	64394128	3	1	742	1	0	0	0	0	1	0	0	0	11843	1319	46	2	515	2	PHF3	6	64394128	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	7404472	64394128	106720939	45	47876											
IBTK	25998	hgsc.bcm.edu;broad.mit.edu	37	6	82883139	82883139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	82883139	T	C	82883139	3	2	742	1	0	0	0	0	1	0	0	0	7483	1638	57	3	331	3	IBTK	6	82883139	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	18489011	82883139	88231928	46	47877											
MAP3K5	4217	hgsc.bcm.edu	37	6	137113272	137113272	+	Silent	SNP	G	G	A	rs142989545		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	137113272	G	A	137113272	2	1	742	1	0	0	0	0	0	0	0	1	9260	1306	46	2		2	MAP3K5	6	137113272	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	54230133	137113272	34001795	47	47878											
GPR126	57211	broad.mit.edu	37	6	142741042	142741042	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	142741042	C	T	142741042	2	4	742	1	0	0	0	0	0	0	0	1	6647	825	29	2		2	GPR126	6	142741042	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	5627770	142741042	28374025	48	47879											
MAP3K4	4216	hgsc.bcm.edu	37	6	161413041	161413041	+	Silent	SNP	G	G	A	rs78823261		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	161413041	G	A	161413041	2	1	742	1	0	0	0	0	0	0	0	1	9259	1074	38	1		1	MAP3K4	6	161413041	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	18671999	161413041	9702026	49	47880											
UNC93A	54346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	167709627	167709627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	167709627	C	T	167709627	3	4	742	1	0	0	0	0	1	0	0	0	17008	768	27	1	387	1	UNC93A	6	167709627	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	6296586	167709627	3405440	50	47881											
PDCD2	5134	hgsc.bcm.edu	37	6	170893454	170893454	+	Silent	SNP	C	C	T	rs200023629		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	170893454	C	T	170893454	2	4	742	1	0	0	0	0	0	0	0	1	11626	639	23	1		1	PDCD2	6	170893454	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	3183827	170893454	221613	51	47882											
AGR3	155465	broad.mit.edu	37	7	16901068	16901068	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	16901068	C	-	16901068	7	5	742	1	0	1	0	1	0	0	0	0	396	835	29	0	205	0	AGR3	7	16901068	Frame_Shift_Del	DEL	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		16901068	142237595	52	47883											
TRA2A	29896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23547073	23547073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	23547073	G	A	23547073	3	1	742	1	0	0	0	0	1	0	0	0	16445	1261	44	2	257	2	TRA2A	7	23547073	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	6646005	23547073	135591590	53	47884											
VWC2	375567	hgsc.bcm.edu	37	7	49815181	49815181	+	Silent	SNP	C	C	T	rs201551578		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	49815181	C	T	49815181	2	4	742	1	0	0	0	0	0	0	0	1	17255	535	19	1		1	VWC2	7	49815181	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	26268108	49815181	109323482	54	47885											
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	86577110	86577110	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	86577110	A	-	86577110	7	5	742	1	0	1	0	1	0	0	0	0	8231	246	9	0	2730	0	KIAA1324L	7	86577110	Frame_Shift_Del	DEL	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	36761929	86577110	72561553	55	47886											
ARPC1B	10095	hgsc.bcm.edu	37	7	98990335	98990335	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	98990335	C	T	98990335	2	4	742	1	0	0	0	0	0	0	0	1	970	639	23	1		1	ARPC1B	7	98990335	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	12413225	98990335	60148328	56	47887											
OPN1SW	611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128415147	128415147	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	128415147	C	T	128415147	2	4	742	1	0	0	0	0	0	0	0	1	10887	796	28	2		2	OPN1SW	7	128415147	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	29424812	128415147	30723516	57	47888											
CLEC2L	154790	hgsc.bcm.edu	37	7	139208786	139208786	+	Missense_Mutation	SNP	C	C	A	rs111447865		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	139208786	C	A	139208786	3	1	742	1	0	0	0	0	1	0	0	0	3511	739	26	4	115	4	CLEC2L	7	139208786	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	10793639	139208786	19929877	58	47889											
AGAP3	116988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150839014	150839014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	150839014	G	A	150839014	3	1	742	1	0	0	0	0	1	0	0	0	369	1261	44	2	1955	2	AGAP3	7	150839014	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	11630228	150839014	8299649	59	47890											
RHEB	6009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151188050	151188050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	151188050	A	T	151188050	3	4	742	1	0	0	0	0	1	0	0	0	13341	420	15	5	479	5	RHEB	7	151188050	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	349036	151188050	7950613	60	47891											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	152012386	152012386	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	152012386	T	-	152012386	7	5	742	1	0	1	0	1	0	0	0	0	9629	1609	56	0	14532	0	MLL3	7	152012386	Frame_Shift_Del	DEL	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	824336	152012386	7126277	61	47892											
SGK223	0	broad.mit.edu	37	8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	8239069	C	A	8239069	3	1	742	1	0	0	0	0	1	0	0	0	14223	738	26	4	4039	4	SGK223	8	8239069	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		8239069	138124953	62	47893											
ADAM18	8749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	39550201	39550201	+	Splice_Site	SNP	T	T	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	39550201	T	A	39550201	5	1	742	1	0	0	0	0	0	0	1	0	239	1652	57	5	1970	5	ADAM18	8	39550201	Splice_Site	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	31311132	39550201	106813821	63	47894											
LRRCC1	85444	ucsc.edu	37	8	86057688	86057688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	86057688	T	C	86057688	3	2	742	1	0	0	0	0	1	0	0	0	9033	1464	51	3	3115	3	LRRCC1	8	86057688	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	46507487	86057688	60306334	64	47895											
TRAPPC9	83696	hgsc.bcm.edu	37	8	140744445	140744445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	140744445	T	G	140744445	3	3	742	1	0	0	0	0	1	0	0	0	16477	1449	50	5	398	5	TRAPPC9	8	140744445	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	54686757	140744445	5619577	65	47896											
C9orf66	157983	hgsc.bcm.edu	37	9	214741	214741	+	Missense_Mutation	SNP	C	C	T	rs200440314		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	214741	C	T	214741	3	4	742	1	0	0	0	0	1	0	0	0	2492	884	31	1	235	1	C9orf66	9	214741	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		214741	140998690	66	47897											
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	8504321	8504321	+	Missense_Mutation	SNP	G	G	A	rs200847027		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	8504321	G	A	8504321	3	1	742	1	0	0	0	0	1	0	0	0	12812	1145	40	1	4140	1	PTPRD	9	8504321	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	8289580	8504321	132709110	67	47898											
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37745145	37745145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	37745145	G	A	37745145	3	1	742	1	0	0	0	0	1	0	0	0	6064	1174	41	2	3174	2	FRMPD1	9	37745145	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	29240824	37745145	103468286	68	47899											
PRKACG	5568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	71628295	71628295	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	71628295	G	A	71628295	2	1	742	1	0	0	0	0	0	0	0	1	12509	987	35	2		2	PRKACG	9	71628295	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	33883150	71628295	69585136	69	47900											
NIPSNAP3A	25934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107521616	107521616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	107521616	A	C	107521616	3	2	742	1	0	0	0	0	1	0	0	0	10437	98	4	5	763	5	NIPSNAP3A	9	107521616	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	35893321	107521616	33691815	70	47901											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113233740	113233740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	113233740	C	A	113233740	3	1	742	1	0	0	0	0	1	0	0	0	15432	710	25	4	7945	4	SVEP1	9	113233740	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	5712124	113233740	27979691	71	47902											
CIZ1	25792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	130947865	130947865	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	130947865	T	-	130947865	7	5	742	1	0	1	0	1	0	0	0	0	3443	1722	60	0	2199	0	CIZ1	9	130947865	Frame_Shift_Del	DEL	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	17714125	130947865	10265566	72	47903											
MED27	9442	hgsc.bcm.edu;broad.mit.edu	37	9	134735980	134735980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	134735980	G	A	134735980	3	1	742	1	0	0	0	0	1	0	0	0	9452	1116	39	1	58	1	MED27	9	134735980	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3788115	134735980	6477451	73	47904											
SDCCAG3	10807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139302279	139302279	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	139302279	T	G	139302279	3	3	742	1	0	0	0	0	1	0	0	0	13971	1623	56	5	934	5	SDCCAG3	9	139302279	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	4566299	139302279	1911152	74	47905											
CUL2	8453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	35360197	35360197	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	35360197	G	C	35360197	3	2	742	1	0	0	0	0	1	0	0	0	4057	1029	36	4	2268	4	CUL2	10	35360197	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		35360197	100174550	75	47906											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70404893	70404893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	70404893	G	T	70404893	3	4	742	1	0	0	0	0	1	0	0	0	15781	1087	38	4	2417	4	TET1	10	70404893	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	35044696	70404893	65129854	76	47907											
C10orf129	142827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96967018	96967018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	96967018	C	A	96967018	3	1	742	1	0	0	0	0	1	0	0	0	1595	827	29	4	467	4	C10orf129	10	96967018	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	26562125	96967018	38567729	77	47908											
PDZD7	79955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	102783355	102783355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	102783355	A	G	102783355	3	3	742	1	0	0	0	0	1	0	0	0	11711	188	7	3	1201	3	PDZD7	10	102783355	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	5816337	102783355	32751392	78	47909											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1078339	1078339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	1078339	C	T	1078339	3	4	742	1	0	0	0	0	1	0	0	0	9982	623	22	2	644	2	MUC2	11	1078339	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		1078339	133928177	79	47910											
PDE3B	5140	hgsc.bcm.edu	37	11	14666027	14666027	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	14666027	C	G	14666027	3	3	742	1	0	0	0	0	1	0	0	0	11645	681	24	4	408	4	PDE3B	11	14666027	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	13587688	14666027	120340489	80	47911											
OR4X1	390113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48285602	48285602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	48285602	T	G	48285602	3	3	742	1	0	0	0	0	1	0	0	0	11091	1606	56	5	192	5	OR4X1	11	48285602	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	33619575	48285602	86720914	81	47912											
SLC43A3	29015	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57182149	57182149	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	57182149	G	A	57182149	2	1	742	1	0	0	0	0	0	0	0	1	14647	987	35	2		2	SLC43A3	11	57182149	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	8896547	57182149	77824367	82	47913											
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118373932	118373932	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	118373932	A	C	118373932	3	2	742	1	0	0	0	0	1	0	0	0	9627	246	9	5	7422	5	MLL	11	118373932	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	61191783	118373932	16632584	83	47914											
HINFP	25988	broad.mit.edu;bcgsc.ca	37	11	119001447	119001447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	119001447	C	G	119001447	3	3	742	1	0	0	0	0	1	0	0	0	7117	855	30	4	200	4	HINFP	11	119001447	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	627515	119001447	16005069	84	47915											
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6457064	6457064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	6457064	G	A	6457064	3	1	742	1	0	0	0	0	1	0	0	0	13940	1174	41	2	28	2	SCNN1A	12	6457064	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		6457064	127394831	85	47916											
PTPRO	5800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	15673198	15673198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	15673198	G	A	15673198	3	1	742	1	0	0	0	0	1	0	0	0	12822	942	33	2	1881	2	PTPRO	12	15673198	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	9216134	15673198	118178697	86	47917											
DDN	23109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49391677	49391677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	49391677	C	T	49391677	3	4	742	1	0	0	0	0	1	0	0	0	4335	594	21	2	1157	2	DDN	12	49391677	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	33718479	49391677	84460218	87	47918											
METAP2	10988	broad.mit.edu	37	12	95867964	95867964	+	Silent	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	95867964	T	G	95867964	2	3	742	1	0	0	0	0	0	0	0	1	9494	1683	59	5		5	METAP2	12	95867964	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	46476287	95867964	37983931	88	47919											
TCP11L2	255394	broad.mit.edu	37	12	106729801	106729811	+	Frame_Shift_Del	DEL	ATATGTTAGAC	ATATGTTAGAC	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	ATATGTTAGAC	ATATGTTAGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	106729811	ATATGTTAGAC	-	106729801	7	5	742	1	0	1	0	1	0	0	0	0	15727	116	4	0		0	TCP11L2	12	106729801	Frame_Shift_Del	DEL	ATATGTTAGAC	TCGA-Q2-A5QZ-01A-11D-A28G-10	10861837	106729801	27122094	89	47920											
RAD9B	144715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	110969392	110969392	+	Silent	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	110969392	A	G	110969392	2	3	742	1	0	0	0	0	0	0	0	1	13009	69	3	3		3	RAD9B	12	110969392	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	4239591	110969392	22882503	90	47921											
CUX2	23316	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	111785758	111785759	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	111785759	-	A	111785758	7	5	742	1	0	1	1	0	0	0	0	0	4067	595	21	0	4176	0	CUX2	12	111785758	Frame_Shift_Ins	INS	-	TCGA-Q2-A5QZ-01A-11D-A28G-10	816366	111785758	22066137	91	47922											
RBM19	9904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	114385205	114385205	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	114385205	G	A	114385205	2	1	742	1	0	0	0	0	0	0	0	1	13134	1281	45	2		2	RBM19	12	114385205	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	2599447	114385205	19466690	92	47923											
BRI3BP	140707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125509640	125509640	+	Silent	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	125509640	C	A	125509640	2	1	742	1	0	0	0	0	0	0	0	1	1515	610	22	4		4	BRI3BP	12	125509640	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	11124435	125509640	8342255	93	47924											
N6AMT2	221143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21306119	21306119	+	Silent	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	21306119	T	C	21306119	2	2	742	1	0	0	0	0	0	0	0	1	10122	1451	51	3		3	N6AMT2	13	21306119	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10		21306119	93863759	94	47925											
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99092299	99092299	+	Splice_Site	SNP	T	T	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	99092299	T	A	99092299	5	1	742	1	0	0	0	0	0	0	1	0	5683	1652	57	5	2823	5	FARP1	13	99092299	Splice_Site	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	77786180	99092299	16077579	95	47926											
KIAA1737	85457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	77580238	77580238	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	77580238	C	T	77580238	2	4	742	1	0	0	0	0	0	0	0	1	8262	883	31	1		1	KIAA1737	14	77580238	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		77580238	29769302	96	47927											
ITPK1	3705	hgsc.bcm.edu	37	14	93408017	93408017	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	93408017	C	T	93408017	2	4	742	1	0	0	0	0	0	0	0	1	7923	639	23	1		1	ITPK1	14	93408017	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	15827779	93408017	13941523	97	47928											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40915310	40915310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	40915310	G	T	40915310	3	4	742	1	0	0	0	0	1	0	0	0	2665	1377	48	4	2964	4	CASC5	15	40915310	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		40915310	61616082	98	47929											
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43585144	43585145	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	TT	43585145	GC	TT	43585144	3	4	742	1	0	0	0	0	1	0	0	0	15847	1203	42	4	1974	4	TGM7	15	43585144	Missense_Mutation	DNP	GC	TCGA-Q2-A5QZ-01A-11D-A28G-10	2669834	43585144	58946248	99	47930											
HDC	3067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50535435	50535435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	50535435	C	T	50535435	3	4	742	1	0	0	0	0	1	0	0	0	7022	835	29	2	849	2	HDC	15	50535435	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	6950291	50535435	51995957	100	47931											
MYO5C	55930	hgsc.bcm.edu	37	15	52500781	52500781	+	Silent	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	52500781	G	T	52500781	2	4	742	1	0	0	0	0	0	0	0	1	10087	1277	45	4		4	MYO5C	15	52500781	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	1965346	52500781	50030611	101	47932											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75982866	75982866	+	Silent	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	75982866	G	C	75982866	2	2	742	1	0	0	0	0	0	0	0	1	3962	1161	41	4		4	CSPG4	15	75982866	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	23482085	75982866	26548526	102	47933											
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4557977	4557977	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	4557977	C	T	4557977	2	4	742	1	0	0	0	0	0	0	0	1	7251	784	28	2		2	HMOX2	16	4557977	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		4557977	85796776	103	47934											
LAT	27040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	28996234	28996234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	28996234	G	A	28996234	3	1	742	1	0	0	0	0	1	0	0	0	8651	1203	42	2	54	2	LAT	16	28996234	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	24438257	28996234	61358519	104	47935											
PRRT2	112476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29825753	29825753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	29825753	A	C	29825753	3	2	742	1	0	0	0	0	1	0	0	0	12620	217	8	5	985	5	PRRT2	16	29825753	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	829519	29825753	60529000	105	47936											
ESRP2	80004	broad.mit.edu	37	16	68267896	68267896	+	Splice_Site	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	68267896	C	G	68267896	5	3	742	1	0	0	0	0	0	0	1	0	5261	521	18	4	1763	4	ESRP2	16	68267896	Splice_Site	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	38442143	68267896	22086857	106	47937											
DHX38	9785	broad.mit.edu	37	16	72141342	72141342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	72141342	G	A	72141342	3	1	742	1	0	0	0	0	1	0	0	0	4513	1116	39	1	2778	1	DHX38	16	72141342	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3873446	72141342	18213411	107	47938											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu	37	16	72923790	72923790	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	72923790	G	-	72923790	7	5	742	1	0	1	0	1	0	0	0	0	17646	1335	47	0	7851	0	ZFHX3	16	72923790	Frame_Shift_Del	DEL	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	782448	72923790	17430963	108	47939											
TNK1	8711	hgsc.bcm.edu	37	17	7287558	7287558	+	Silent	SNP	T	T	C	rs17853470		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	7287558	T	C	7287558	2	2	742	1	0	0	0	0	0	0	0	1	16329	1509	53	3		3	TNK1	17	7287558	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10		7287558	73907652	109	47940											
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34263772	34263772	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	34263772	C	G	34263772	3	3	742	1	0	0	0	0	1	0	0	0	9141	623	22	4	90	4	LYZL6	17	34263772	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	26976214	34263772	46931438	110	47941											
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274238	39274238	+	Silent	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	39274238	A	G	39274238	2	3	742	1	0	0	0	0	0	0	0	1	8556	273	10	3		3	KRTAP4-11	17	39274238	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	5010466	39274238	41920972	111	47942											
KRTAP4-3	85290	bcgsc.ca	37	17	39324104	39324104	+	Silent	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	39324104	A	G	39324104	2	3	742	1	0	0	0	0	0	0	0	1	8559	407	15	3		3	KRTAP4-3	17	39324104	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	49866	39324104	41871106	112	47943											
TTC25	83538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40113444	40113444	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	40113444	A	T	40113444	3	4	742	1	0	0	0	0	1	0	0	0	16705	11	1	5	1334	5	TTC25	17	40113444	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	789340	40113444	41081766	113	47944											
TUBG1	7283	broad.mit.edu;bcgsc.ca	37	17	40765685	40765685	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	40765685	C	T	40765685	2	4	742	1	0	0	0	0	0	0	0	1	16776	610	22	2		2	TUBG1	17	40765685	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	652241	40765685	40429525	114	47945											
SOST	50964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41835944	41835944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	41835944	T	C	41835944	3	2	742	1	0	0	0	0	1	0	0	0	14951	1464	51	3	483	3	SOST	17	41835944	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	1070259	41835944	39359266	115	47946											
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42171119	42171119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	42171119	G	A	42171119	3	1	742	1	0	0	0	0	1	0	0	0	7017	1144	40	1	3286	1	HDAC5	17	42171119	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	335175	42171119	39024091	116	47947											
PHB	5245	hgsc.bcm.edu;bcgsc.ca	37	17	47489082	47489082	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	47489082	G	-	47489082	7	5	742	1	0	1	0	1	0	0	0	0	11821	1116	39	0	630	0	PHB	17	47489082	Frame_Shift_Del	DEL	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	5317963	47489082	33706128	117	47948											
NPB	256933	hgsc.bcm.edu	37	17	79860378	79860378	+	Silent	SNP	A	A	G	rs182909729		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	79860378	A	G	79860378	2	3	742	1	0	0	0	0	0	0	0	1	10574	40	2	3		3	NPB	17	79860378	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	32371296	79860378	1334832	118	47949											
UTS2R	2837	broad.mit.edu	37	17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	80333066	C	A	80333066	3	1	742	1	0	0	0	0	1	0	0	0	17118	768	27	4	868	4	UTS2R	17	80333066	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	472688	80333066	862144	119	47950											
KCTD1	284252	hgsc.bcm.edu	37	18	24128223	24128225	+	In_Frame_Del	DEL	TCC	TCC	-	rs143299522	alternate_allele	TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	24128225	TCC	-	24128223	7	5	742	1	0	1	0	1	0	0	0	0	8103	1783	62	0	2339	0	KCTD1	18	24128223	In_Frame_Del	DEL	TCC	TCGA-Q2-A5QZ-01A-11D-A28G-10		24128223	53949025	120	47951											
WDR18	57418	hgsc.bcm.edu	37	19	991962	991962	+	Silent	SNP	C	C	T	rs200830437		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	991962	C	T	991962	2	4	742	1	0	0	0	0	0	0	0	1	17290	813	29	2		2	WDR18	19	991962	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		991962	58137021	121	47952											
DOT1L	84444	hgsc.bcm.edu	37	19	2210451	2210451	+	Missense_Mutation	SNP	C	C	G	rs138206172		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	2210451	C	G	2210451	3	3	742	1	0	0	0	0	1	0	0	0	4711	768	27	4	1108	4	DOT1L	19	2210451	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	1218489	2210451	56918532	122	47953											
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9362181	9362181	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	9362181	G	C	9362181	3	2	742	1	0	0	0	0	1	0	0	0	11228	1290	45	4	464	4	OR7E24	19	9362181	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	7151730	9362181	49766802	123	47954											
MAN2B1	4125	broad.mit.edu;bcgsc.ca	37	19	12760979	12760979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	12760979	G	A	12760979	3	1	742	1	0	0	0	0	1	0	0	0	9223	1058	37	1	963	1	MAN2B1	19	12760979	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3398798	12760979	46368004	124	47955											
ZNF571	51276	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	38056037	38056037	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	38056037	G	A	38056037	2	1	742	1	0	0	0	0	0	0	0	1	18015	1306	46	2		2	ZNF571	19	38056037	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	25295058	38056037	21072946	125	47956											
CAPN12	147968	hgsc.bcm.edu	37	19	39226803	39226803	+	Silent	SNP	G	G	A	rs201698633		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	39226803	G	A	39226803	2	1	742	1	0	0	0	0	0	0	0	1	2627	1074	38	1		1	CAPN12	19	39226803	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	1170766	39226803	19902180	126	47957											
B9D2	80776	hgsc.bcm.edu;broad.mit.edu	37	19	41869392	41869392	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	41869392	T	-	41869392	7	5	742	1	0	1	0	1	0	0	0	0	1278	1512	53	0	506	0	B9D2	19	41869392	Frame_Shift_Del	DEL	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	2642589	41869392	17259591	127	47958											
GLTSCR1	29998	hgsc.bcm.edu	37	19	48183862	48183862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	48183862	G	C	48183862	3	2	742	1	0	0	0	0	1	0	0	0	6481	1203	42	4	1449	4	GLTSCR1	19	48183862	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	6314470	48183862	10945121	128	47959											
PRR12	57479	hgsc.bcm.edu	37	19	50100554	50100554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	50100554	G	A	50100554	3	1	742	1	0	0	0	0	1	0	0	0	12594	1290	45	2	2976	2	PRR12	19	50100554	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	1916692	50100554	9028429	129	47960											
IGLON5	402665	hgsc.bcm.edu	37	19	51831097	51831097	+	Silent	SNP	C	C	A	rs200107403		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	51831097	C	A	51831097	2	1	742	1	0	0	0	0	0	0	0	1	7602	639	23	4		4	IGLON5	19	51831097	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	1730543	51831097	7297886	130	47961											
LRRN4	164312	hgsc.bcm.edu	37	20	6033147	6033147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	C	6033147	T	C	6033147	3	2	742	1	0	0	0	0	1	0	0	0	9044	1580	55	3	1939	3	LRRN4	20	6033147	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10		6033147	56992373	131	47962											
ARFGAP1	55738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61918934	61918934	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	61918934	T	G	61918934	3	3	742	1	0	0	0	0	1	0	0	0	849	1722	60	5	1010	5	ARFGAP1	20	61918934	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	55885787	61918934	1106586	132	47963											
ADAMTS5	11096	hgsc.bcm.edu	37	21	28338045	28338045	+	Silent	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	T	28338045	A	T	28338045	2	4	742	1	0	0	0	0	0	0	0	1	269	291	11	5		5	ADAMTS5	21	28338045	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10		28338045	19791850	133	47964											
OLIG1	116448	broad.mit.edu	37	21	34442709	34442717	+	In_Frame_Del	DEL	TCCTCCACT	TCCTCCACT	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TCCTCCACT	TCCTCCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	34442717	TCCTCCACT	-	34442709	7	5	742	1	0	1	0	1	0	0	0	0	10867	1551	54	0	159	0	OLIG1	21	34442709	In_Frame_Del	DEL	TCCTCCACT	TCGA-Q2-A5QZ-01A-11D-A28G-10	6104664	34442709	13687186	134	47965											
TTC3	7267	hgsc.bcm.edu;bcgsc.ca	37	21	38519809	38519809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	38519809	G	A	38519809	3	1	742	1	0	0	0	0	1	0	0	0	16709	1319	46	2	2004	2	TTC3	21	38519809	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	4077100	38519809	9610086	135	47966											
PRDM15	63977	hgsc.bcm.edu	37	21	43221434	43221434	+	Missense_Mutation	SNP	G	G	A	rs147616045		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	43221434	G	A	43221434	3	1	742	1	0	0	0	0	1	0	0	0	12466	1087	38	1	37	1	PRDM15	21	43221434	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	4701625	43221434	4908461	136	47967											
KRTAP10-7	386675	broad.mit.edu	37	21	46020576	46020576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	46020576	G	A	46020576	3	1	742	1	0	0	0	0	1	0	0	0	8521	1145	40	1	57	1	KRTAP10-7	21	46020576	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	2799142	46020576	2109319	137	47968											
GSC2	2928	hgsc.bcm.edu	37	22	19137290	19137290	+	Silent	SNP	G	G	A	rs201641909		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	19137290	G	A	19137290	2	1	742	1	0	0	0	0	0	0	0	1	6822	1281	45	2		2	GSC2	22	19137290	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		19137290	32167276	138	47969											
PRPS2	5634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	12840843	12840843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	G	12840843	C	G	12840843	3	3	742	1	0	0	0	0	1	0	0	0	12590	903	32	4	920	4	PRPS2	23	12840843	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		12840843	142429717	139	47970											
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18919658	18919658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	18919658	C	A	18919658	3	1	742	1	0	0	0	0	1	0	0	0	11851	855	30	4	763	4	PHKA2	23	18919658	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	6078815	18919658	136350902	140	47971											
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	80001213	80001213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	80001213	G	A	80001213	3	1	742	1	0	0	0	0	1	0	0	0	1528	1203	42	2	5102	2	BRWD3	23	80001213	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	61081555	80001213	75269347	141	47972											
SH3BGRL	6451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	80532507	80532507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	80532507	C	A	80532507	3	1	742	1	0	0	0	0	1	0	0	0	14254	797	28	4	76	4	SH3BGRL	23	80532507	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	531294	80532507	74738053	142	47973											
HS6ST2	90161	hgsc.bcm.edu	37	X	132092310	132092310	+	Silent	SNP	C	C	A	rs201640022		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	132092310	C	A	132092310	2	1	742	1	0	0	0	0	0	0	0	1	7378	581	21	4		4	HS6ST2	23	132092310	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	51559803	132092310	23178250	143	47974											
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	135475736	135475737	+	Frame_Shift_Ins	INS	-	-	AAAAT	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	AAAAT	135475737	-	AAAAT	135475736	7	5	742	1	0	1	1	0	0	0	0	0	6636	362	13	0	8135	0	GPR112	23	135475736	Frame_Shift_Ins	INS	-	TCGA-Q2-A5QZ-01A-11D-A28G-10	3383426	135475736	19794824	144	47975											
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151808889	151808890	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	-	151808890	TG	-	151808889	7	5	742	1	0	1	0	1	0	0	0	0	6182	1580	55	0	206	0	GABRQ	23	151808889	Frame_Shift_Del	DEL	TG	TCGA-Q2-A5QZ-01A-11D-A28G-10	16333153	151808889	3461671	145	47976											
PNCK	139728	broad.mit.edu	37	X	152938523	152938523	+	Silent	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	A	152938523	C	A	152938523	2	1	742	1	0	0	0	0	0	0	0	1	12152	697	25	4		4	PNCK	23	152938523	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	1129634	152938523	2332037	146	47977											
